#transId geneId source chrom start end strand proteinId geneName transcriptName geneType transcriptType MGP_AJ_T0019581.1 MGP_AJ_G0015964.1 mouse_genomes_project 1 41148158 41238800 + MGP_AJ_P0019581 Nck2 protein_coding protein_coding MGP_AJ_T0019582.1 MGP_AJ_G0015964.1 mouse_genomes_project 1 41149330 41166481 + Nck2 protein_coding processed_transcript MGP_AJ_T0019583.1 MGP_AJ_G0015964.1 mouse_genomes_project 1 41149330 41276171 + MGP_AJ_P0019583 Nck2 protein_coding protein_coding MGP_AJ_T0019584.1 MGP_AJ_G0015964.1 mouse_genomes_project 1 41160903 41166509 + Nck2 protein_coding processed_transcript MGP_AJ_T0019585.1 MGP_AJ_G0015964.1 mouse_genomes_project 1 41237572 41259228 + MGP_AJ_P0019585 Nck2 protein_coding protein_coding MGP_AJ_T0019586.1 MGP_AJ_G0015964.1 mouse_genomes_project 1 41238736 41274988 + MGP_AJ_P0019586 Nck2 protein_coding protein_coding MGP_AJ_T0012087.1 MGP_AJ_G0010182.1 mouse_genomes_project 1 63978421 63978833 + processed_pseudogene processed_pseudogene MGP_AJ_T0005915.1 MGP_AJ_G0004960.1 mouse_genomes_project 1 135087706 135090246 - Gm33994 lincRNA lincRNA MGP_AJ_T0012142.1 MGP_AJ_G0010237.1 mouse_genomes_project 1 89678810 89681063 - processed_pseudogene processed_pseudogene MGP_AJ_T0000770.1 MGP_AJ_G0000708.1 mouse_genomes_project 1 180902715 180906583 - TEC TEC MGP_AJ_T0016978.1 MGP_AJ_G0015065.1 mouse_genomes_project 1 34156043 34158009 + D430040D24Rik processed_transcript retained_intron MGP_AJ_T0016979.1 MGP_AJ_G0015065.1 mouse_genomes_project 1 34156701 34163968 + D430040D24Rik processed_transcript antisense MGP_AJ_T0012094.1 MGP_AJ_G0010189.1 mouse_genomes_project 1 68931479 68931858 - processed_pseudogene processed_pseudogene MGP_AJ_T0002939.1 MGP_AJ_G0002759.1 mouse_genomes_project 1 164004231 164005608 - Gm38325 antisense antisense MGP_AJ_T0000571.1 MGP_AJ_G0000512.1 mouse_genomes_project 1 95832783 95833968 - TEC TEC MGP_AJ_T0021289.1 MGP_AJ_G0016286.1 mouse_genomes_project 1 89515338 89541703 + MGP_AJ_P0021289 Espnl protein_coding protein_coding MGP_AJ_T0021290.1 MGP_AJ_G0016286.1 mouse_genomes_project 1 89515396 89539291 + MGP_AJ_P0021290 Espnl protein_coding protein_coding MGP_AJ_T0022326.1 MGP_AJ_G0016515.1 mouse_genomes_project 1 134458220 134488892 - MGP_AJ_P0022326 Igfn1 protein_coding unknown_likely_coding MGP_AJ_T0022327.1 MGP_AJ_G0016515.1 mouse_genomes_project 1 134458222 134467745 - MGP_AJ_P0022327 Igfn1 protein_coding nonsense_mediated_decay MGP_AJ_T0022328.1 MGP_AJ_G0016515.1 mouse_genomes_project 1 134458229 134511459 - MGP_AJ_P0022328 Igfn1 protein_coding protein_coding MGP_AJ_T0022329.1 MGP_AJ_G0016515.1 mouse_genomes_project 1 134459242 134487096 - MGP_AJ_P0022329 Igfn1 protein_coding protein_coding MGP_AJ_T0020123.1 MGP_AJ_G0016060.1 mouse_genomes_project 1 58332398 58405730 + MGP_AJ_P0020123 Abi2 protein_coding protein_coding MGP_AJ_T0020124.1 MGP_AJ_G0016060.1 mouse_genomes_project 1 58332474 58405730 + MGP_AJ_P0020124 Abi2 protein_coding protein_coding MGP_AJ_T0020125.1 MGP_AJ_G0016060.1 mouse_genomes_project 1 58332474 58401660 + MGP_AJ_P0020125 Abi2 protein_coding protein_coding MGP_AJ_T0020126.1 MGP_AJ_G0016060.1 mouse_genomes_project 1 58332513 58404090 + MGP_AJ_P0020126 Abi2 protein_coding protein_coding MGP_AJ_T0020127.1 MGP_AJ_G0016060.1 mouse_genomes_project 1 58332560 58369323 + Abi2 protein_coding retained_intron MGP_AJ_T0020128.1 MGP_AJ_G0016060.1 mouse_genomes_project 1 58332574 58371849 + MGP_AJ_P0020128 Abi2 protein_coding protein_coding MGP_AJ_T0020129.1 MGP_AJ_G0016060.1 mouse_genomes_project 1 58332582 58401730 + MGP_AJ_P0020129 Abi2 protein_coding protein_coding MGP_AJ_T0020130.1 MGP_AJ_G0016060.1 mouse_genomes_project 1 58332587 58359055 + Abi2 protein_coding retained_intron MGP_AJ_T0020131.1 MGP_AJ_G0016060.1 mouse_genomes_project 1 58361631 58402330 + MGP_AJ_P0020131 Abi2 protein_coding protein_coding MGP_AJ_T0020132.1 MGP_AJ_G0016060.1 mouse_genomes_project 1 58361755 58401492 + MGP_AJ_P0020132 Abi2 protein_coding protein_coding MGP_AJ_T0020133.1 MGP_AJ_G0016060.1 mouse_genomes_project 1 58361760 58401655 + MGP_AJ_P0020133 Abi2 protein_coding protein_coding MGP_AJ_T0020134.1 MGP_AJ_G0016060.1 mouse_genomes_project 1 58363490 58401876 + MGP_AJ_P0020134 Abi2 protein_coding protein_coding MGP_AJ_T0000760.1 MGP_AJ_G0000698.1 mouse_genomes_project 1 178897456 178899985 + TEC TEC MGP_AJ_T0019133.1 MGP_AJ_G0015875.1 mouse_genomes_project 1 26228719 26232846 - MGP_AJ_P0019133 Gm597 protein_coding protein_coding MGP_AJ_T0024206.1 MGP_AJ_G0016924.1 mouse_genomes_project 1 190447142 190485151 - MGP_AJ_P0024206 Dtl protein_coding nonsense_mediated_decay MGP_AJ_T0024207.1 MGP_AJ_G0016924.1 mouse_genomes_project 1 190447151 190485174 - MGP_AJ_P0024207 Dtl protein_coding protein_coding MGP_AJ_T0024208.1 MGP_AJ_G0016924.1 mouse_genomes_project 1 190448901 190485144 - Dtl protein_coding processed_transcript MGP_AJ_T0024209.1 MGP_AJ_G0016924.1 mouse_genomes_project 1 190459529 190485143 - MGP_AJ_P0024209 Dtl protein_coding nonsense_mediated_decay MGP_AJ_T0024210.1 MGP_AJ_G0016924.1 mouse_genomes_project 1 190469969 190485141 - Dtl protein_coding retained_intron MGP_AJ_T0024211.1 MGP_AJ_G0016924.1 mouse_genomes_project 1 190480448 190485143 - Dtl protein_coding retained_intron MGP_AJ_T0019990.1 MGP_AJ_G0016039.1 mouse_genomes_project 1 56501921 56550022 - MGP_AJ_P0019990 Als2cr12 protein_coding protein_coding MGP_AJ_T0019991.1 MGP_AJ_G0016039.1 mouse_genomes_project 1 56501921 56550025 - MGP_AJ_P0019991 Als2cr12 protein_coding protein_coding MGP_AJ_T0019992.1 MGP_AJ_G0016039.1 mouse_genomes_project 1 56502164 56550022 - MGP_AJ_P0019992 Als2cr12 protein_coding nonsense_mediated_decay MGP_AJ_T0019993.1 MGP_AJ_G0016039.1 mouse_genomes_project 1 56517751 56548630 - Als2cr12 protein_coding retained_intron MGP_AJ_T0000800.1 MGP_AJ_G0000736.1 mouse_genomes_project 1 192354870 192357016 + TEC TEC MGP_AJ_T0000568.1 MGP_AJ_G0000509.1 mouse_genomes_project 1 93892141 93893876 - TEC TEC MGP_AJ_T0018938.1 MGP_AJ_G0015826.1 mouse_genomes_project 1 10996298 11036611 + MGP_AJ_P0018938 Xkr9 protein_coding protein_coding MGP_AJ_T0000725.1 MGP_AJ_G0000664.1 mouse_genomes_project 1 163088536 163091624 + TEC TEC MGP_AJ_T0098889.1 MGP_AJ_G0036872.1 mouse_genomes_project 1 185985320 185988812 - Gm15509 sense_intronic sense_intronic MGP_AJ_T0021348.1 MGP_AJ_G0016299.1 mouse_genomes_project 1 90727827 90736339 - MGP_AJ_P0021348 Olfr1414 protein_coding protein_coding MGP_AJ_T0021349.1 MGP_AJ_G0016299.1 mouse_genomes_project 1 90727827 90736243 - MGP_AJ_P0021349 Olfr1414 protein_coding protein_coding MGP_AJ_T0021350.1 MGP_AJ_G0016299.1 mouse_genomes_project 1 90728104 90736339 - MGP_AJ_P0021350 Olfr1414 protein_coding protein_coding MGP_AJ_T0020169.1 MGP_AJ_G0016068.1 mouse_genomes_project 1 61043130 61044496 - Ndufs1 protein_coding retained_intron MGP_AJ_T0020170.1 MGP_AJ_G0016068.1 mouse_genomes_project 1 61043130 61076485 - MGP_AJ_P0020170 Ndufs1 protein_coding protein_coding MGP_AJ_T0020171.1 MGP_AJ_G0016068.1 mouse_genomes_project 1 61043138 61047262 - Ndufs1 protein_coding retained_intron MGP_AJ_T0020172.1 MGP_AJ_G0016068.1 mouse_genomes_project 1 61043223 61046930 - MGP_AJ_P0020172 Ndufs1 protein_coding nonsense_mediated_decay MGP_AJ_T0020173.1 MGP_AJ_G0016068.1 mouse_genomes_project 1 61043269 61076395 - MGP_AJ_P0020173 Ndufs1 protein_coding protein_coding MGP_AJ_T0020174.1 MGP_AJ_G0016068.1 mouse_genomes_project 1 61049611 61076326 - MGP_AJ_P0020174 Ndufs1 protein_coding protein_coding MGP_AJ_T0020175.1 MGP_AJ_G0016068.1 mouse_genomes_project 1 61049778 61052397 - Ndufs1 protein_coding retained_intron MGP_AJ_T0020176.1 MGP_AJ_G0016068.1 mouse_genomes_project 1 61056237 61076332 - Ndufs1 protein_coding retained_intron MGP_AJ_T0020177.1 MGP_AJ_G0016068.1 mouse_genomes_project 1 61058456 61076330 - Ndufs1 protein_coding retained_intron MGP_AJ_T0020178.1 MGP_AJ_G0016068.1 mouse_genomes_project 1 61063386 61076353 - MGP_AJ_P0020178 Ndufs1 protein_coding protein_coding MGP_AJ_T0020179.1 MGP_AJ_G0016068.1 mouse_genomes_project 1 61064560 61076329 - MGP_AJ_P0020179 Ndufs1 protein_coding protein_coding MGP_AJ_T0020180.1 MGP_AJ_G0016068.1 mouse_genomes_project 1 61068636 61076456 - MGP_AJ_P0020180 Ndufs1 protein_coding protein_coding MGP_AJ_T0020181.1 MGP_AJ_G0016068.1 mouse_genomes_project 1 61070264 61076496 - MGP_AJ_P0020181 Ndufs1 protein_coding protein_coding MGP_AJ_T0005642.1 MGP_AJ_G0004749.1 mouse_genomes_project 1 1687426 1690550 - Gm37323 lincRNA lincRNA MGP_AJ_T0012352.1 MGP_AJ_G0010447.1 mouse_genomes_project 1 180988630 180989047 + processed_pseudogene processed_pseudogene MGP_AJ_T0000654.1 MGP_AJ_G0000593.1 mouse_genomes_project 1 137055440 137057844 - TEC TEC MGP_AJ_T0002754.1 MGP_AJ_G0002620.1 mouse_genomes_project 1 12071895 12096533 + Gm9947 antisense antisense MGP_AJ_T0002755.1 MGP_AJ_G0002620.1 mouse_genomes_project 1 12074412 12077332 + Gm9947 antisense antisense MGP_AJ_T0101684.1 MGP_AJ_G0039644.1 mouse_genomes_project 1 155890165 155898027 + transcribed_processed_pseudogene processed_transcript MGP_AJ_T0101685.1 MGP_AJ_G0039644.1 mouse_genomes_project 1 155890453 155898024 + transcribed_processed_pseudogene processed_transcript MGP_AJ_T0101686.1 MGP_AJ_G0039644.1 mouse_genomes_project 1 155890791 155891085 + transcribed_processed_pseudogene TEC MGP_AJ_T0101687.1 MGP_AJ_G0039644.1 mouse_genomes_project 1 155897692 155897943 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0000505.1 MGP_AJ_G0000446.1 mouse_genomes_project 1 66035032 66037253 - TEC TEC MGP_AJ_T0021112.1 MGP_AJ_G0016247.1 mouse_genomes_project 1 85508589 85541742 - MGP_AJ_P0021112 Ngef protein_coding protein_coding MGP_AJ_T0021113.1 MGP_AJ_G0016247.1 mouse_genomes_project 1 85508589 85606274 - MGP_AJ_P0021113 Ngef protein_coding protein_coding MGP_AJ_T0021114.1 MGP_AJ_G0016247.1 mouse_genomes_project 1 85510440 85517924 - MGP_AJ_P0021114 Ngef protein_coding protein_coding MGP_AJ_T0021115.1 MGP_AJ_G0016247.1 mouse_genomes_project 1 85511484 85517964 - Ngef protein_coding retained_intron MGP_AJ_T0000522.1 MGP_AJ_G0000463.1 mouse_genomes_project 1 76421119 76422598 - TEC TEC MGP_AJ_T0012176.1 MGP_AJ_G0010271.1 mouse_genomes_project 1 104800558 104800829 + processed_pseudogene processed_pseudogene MGP_AJ_T0005646.1 MGP_AJ_G0004753.1 mouse_genomes_project 1 7262728 7264888 - Snhg6 lincRNA lincRNA MGP_AJ_T0005647.1 MGP_AJ_G0004753.1 mouse_genomes_project 1 7262792 7264000 - Snhg6 lincRNA lincRNA MGP_AJ_T0005648.1 MGP_AJ_G0004753.1 mouse_genomes_project 1 7262794 7264873 - Snhg6 lincRNA lincRNA MGP_AJ_T0005649.1 MGP_AJ_G0004753.1 mouse_genomes_project 1 7262794 7263674 - Snhg6 lincRNA lincRNA MGP_AJ_T0005650.1 MGP_AJ_G0004753.1 mouse_genomes_project 1 7262794 7264887 - Snhg6 lincRNA lincRNA MGP_AJ_T0000552.1 MGP_AJ_G0000493.1 mouse_genomes_project 1 84949834 84952469 + TEC TEC MGP_AJ_T0009470.1 MGP_AJ_G0007592.1 mouse_genomes_project 1 10596508 10596590 + Gm27881 miRNA miRNA MGP_AJ_T0009558.1 MGP_AJ_G0007680.1 mouse_genomes_project 1 175646829 175646909 + Gm25993 miRNA miRNA MGP_AJ_T0019019.1 MGP_AJ_G0015844.1 mouse_genomes_project 1 15088068 15126630 + MGP_AJ_P0019019 Crispld1 protein_coding protein_coding MGP_AJ_T0019020.1 MGP_AJ_G0015844.1 mouse_genomes_project 1 15088082 15106927 + MGP_AJ_P0019020 Crispld1 protein_coding protein_coding MGP_AJ_T0019021.1 MGP_AJ_G0015844.1 mouse_genomes_project 1 15088111 15127399 + MGP_AJ_P0019021 Crispld1 protein_coding protein_coding MGP_AJ_T0023668.1 MGP_AJ_G0016814.1 mouse_genomes_project 1 173837340 174259959 - MGP_AJ_P0023668 Rgs7 protein_coding protein_coding MGP_AJ_T0023669.1 MGP_AJ_G0016814.1 mouse_genomes_project 1 173837341 174259735 - MGP_AJ_P0023669 Rgs7 protein_coding protein_coding MGP_AJ_T0023670.1 MGP_AJ_G0016814.1 mouse_genomes_project 1 173837470 174259849 - MGP_AJ_P0023670 Rgs7 protein_coding protein_coding MGP_AJ_T0023671.1 MGP_AJ_G0016814.1 mouse_genomes_project 1 173837987 173864333 - MGP_AJ_P0023671 Rgs7 protein_coding protein_coding MGP_AJ_T0023672.1 MGP_AJ_G0016814.1 mouse_genomes_project 1 173837987 174258593 - MGP_AJ_P0023672 Rgs7 protein_coding protein_coding MGP_AJ_T0023673.1 MGP_AJ_G0016814.1 mouse_genomes_project 1 173837987 173864273 - MGP_AJ_P0023673 Rgs7 protein_coding protein_coding MGP_AJ_T0023674.1 MGP_AJ_G0016814.1 mouse_genomes_project 1 173837988 173857619 - MGP_AJ_P0023674 Rgs7 protein_coding protein_coding MGP_AJ_T0023675.1 MGP_AJ_G0016814.1 mouse_genomes_project 1 173853507 173857139 - Rgs7 protein_coding retained_intron MGP_AJ_T0000486.1 MGP_AJ_G0000427.1 mouse_genomes_project 1 58795456 58796857 + TEC TEC MGP_AJ_T0018844.1 MGP_AJ_G0015814.1 mouse_genomes_project 1 7346212 7359735 - MGP_AJ_P0018844 Cops5 protein_coding protein_coding MGP_AJ_T0018845.1 MGP_AJ_G0015814.1 mouse_genomes_project 1 7346454 7356737 - MGP_AJ_P0018845 Cops5 protein_coding nonsense_mediated_decay MGP_AJ_T0018846.1 MGP_AJ_G0015814.1 mouse_genomes_project 1 7348809 7359549 - MGP_AJ_P0018846 Cops5 protein_coding nonsense_mediated_decay MGP_AJ_T0018847.1 MGP_AJ_G0015814.1 mouse_genomes_project 1 7352291 7359757 - MGP_AJ_P0018847 Cops5 protein_coding protein_coding MGP_AJ_T0018848.1 MGP_AJ_G0015814.1 mouse_genomes_project 1 7352522 7359546 - Cops5 protein_coding retained_intron MGP_AJ_T0018849.1 MGP_AJ_G0015814.1 mouse_genomes_project 1 7354647 7359776 - Cops5 protein_coding retained_intron MGP_AJ_T0018850.1 MGP_AJ_G0015814.1 mouse_genomes_project 1 7358887 7359553 - Cops5 protein_coding retained_intron MGP_AJ_T0012100.1 MGP_AJ_G0010195.1 mouse_genomes_project 1 70355640 70356169 + processed_pseudogene processed_pseudogene MGP_AJ_T0102196.1 MGP_AJ_G0039939.1 mouse_genomes_project 1 172555846 172557468 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0023213.1 MGP_AJ_G0016684.1 mouse_genomes_project 1 164790506 164853049 + MGP_AJ_P0023213 Ildr2 protein_coding protein_coding MGP_AJ_T0023214.1 MGP_AJ_G0016684.1 mouse_genomes_project 1 164790560 164847497 + MGP_AJ_P0023214 Ildr2 protein_coding protein_coding MGP_AJ_T0023215.1 MGP_AJ_G0016684.1 mouse_genomes_project 1 164790560 164847497 + MGP_AJ_P0023215 Ildr2 protein_coding protein_coding MGP_AJ_T0023216.1 MGP_AJ_G0016684.1 mouse_genomes_project 1 164790560 164847497 + MGP_AJ_P0023216 Ildr2 protein_coding protein_coding MGP_AJ_T0023217.1 MGP_AJ_G0016684.1 mouse_genomes_project 1 164790560 164847497 + MGP_AJ_P0023217 Ildr2 protein_coding protein_coding MGP_AJ_T0023218.1 MGP_AJ_G0016684.1 mouse_genomes_project 1 164790560 164847497 + MGP_AJ_P0023218 Ildr2 protein_coding protein_coding MGP_AJ_T0023219.1 MGP_AJ_G0016684.1 mouse_genomes_project 1 164790560 164847497 + MGP_AJ_P0023219 Ildr2 protein_coding protein_coding MGP_AJ_T0019100.1 MGP_AJ_G0015869.1 mouse_genomes_project 1 21409081 21479303 - MGP_AJ_P0019100 Fam135a protein_coding nonsense_mediated_decay MGP_AJ_T0019101.1 MGP_AJ_G0015869.1 mouse_genomes_project 1 21409081 21424864 - MGP_AJ_P0019101 Fam135a protein_coding protein_coding MGP_AJ_T0019102.1 MGP_AJ_G0015869.1 mouse_genomes_project 1 21409233 21492241 - MGP_AJ_P0019102 Fam135a protein_coding protein_coding MGP_AJ_T0019103.1 MGP_AJ_G0015869.1 mouse_genomes_project 1 21409579 21492229 - MGP_AJ_P0019103 Fam135a protein_coding protein_coding MGP_AJ_T0019104.1 MGP_AJ_G0015869.1 mouse_genomes_project 1 21409592 21427191 - MGP_AJ_P0019104 Fam135a protein_coding nonsense_mediated_decay MGP_AJ_T0019105.1 MGP_AJ_G0015869.1 mouse_genomes_project 1 21409669 21492380 - MGP_AJ_P0019105 Fam135a protein_coding protein_coding MGP_AJ_T0019106.1 MGP_AJ_G0015869.1 mouse_genomes_project 1 21422230 21426555 - MGP_AJ_P0019106 Fam135a protein_coding protein_coding MGP_AJ_T0019107.1 MGP_AJ_G0015869.1 mouse_genomes_project 1 21426826 21492263 - MGP_AJ_P0019107 Fam135a protein_coding protein_coding MGP_AJ_T0019108.1 MGP_AJ_G0015869.1 mouse_genomes_project 1 21449375 21492388 - Fam135a protein_coding retained_intron MGP_AJ_T0019310.1 MGP_AJ_G0015909.1 mouse_genomes_project 1 34110197 34126552 + MGP_AJ_P0019310 Cnnm3 protein_coding protein_coding MGP_AJ_T0019311.1 MGP_AJ_G0015909.1 mouse_genomes_project 1 34110197 34126552 + MGP_AJ_P0019311 Cnnm3 protein_coding protein_coding MGP_AJ_T0019312.1 MGP_AJ_G0015909.1 mouse_genomes_project 1 34111427 34118749 + Cnnm3 protein_coding retained_intron MGP_AJ_T0019313.1 MGP_AJ_G0015909.1 mouse_genomes_project 1 34116882 34117888 + Cnnm3 protein_coding retained_intron MGP_AJ_T0019314.1 MGP_AJ_G0015909.1 mouse_genomes_project 1 34119074 34123915 + Cnnm3 protein_coding retained_intron MGP_AJ_T0019029.1 MGP_AJ_G0015848.1 mouse_genomes_project 1 16501530 16557573 + MGP_AJ_P0019029 Tfap2d protein_coding protein_coding MGP_AJ_T0019030.1 MGP_AJ_G0015848.1 mouse_genomes_project 1 16502012 16557405 + MGP_AJ_P0019030 Tfap2d protein_coding unknown_likely_coding MGP_AJ_T0019031.1 MGP_AJ_G0015848.1 mouse_genomes_project 1 16505661 16540913 + Tfap2d protein_coding processed_transcript MGP_AJ_T0005984.1 MGP_AJ_G0005012.1 mouse_genomes_project 1 164621482 164621643 + Gm37923 lincRNA lincRNA MGP_AJ_T0019748.1 MGP_AJ_G0015991.1 mouse_genomes_project 1 50401879 50423088 + MGP_AJ_P0019748 Nemp2 protein_coding protein_coding MGP_AJ_T0019749.1 MGP_AJ_G0015991.1 mouse_genomes_project 1 50401913 50423088 + MGP_AJ_P0019749 Nemp2 protein_coding nonsense_mediated_decay MGP_AJ_T0019750.1 MGP_AJ_G0015991.1 mouse_genomes_project 1 50401923 50421805 + MGP_AJ_P0019750 Nemp2 protein_coding nonsense_mediated_decay MGP_AJ_T0019751.1 MGP_AJ_G0015991.1 mouse_genomes_project 1 50401928 50421898 + Nemp2 protein_coding retained_intron MGP_AJ_T0019752.1 MGP_AJ_G0015991.1 mouse_genomes_project 1 50401973 50421871 + MGP_AJ_P0019752 Nemp2 protein_coding nonsense_mediated_decay MGP_AJ_T0019753.1 MGP_AJ_G0015991.1 mouse_genomes_project 1 50412692 50423088 + Nemp2 protein_coding retained_intron MGP_AJ_T0019754.1 MGP_AJ_G0015991.1 mouse_genomes_project 1 50413160 50421825 + Nemp2 protein_coding processed_transcript MGP_AJ_T0019755.1 MGP_AJ_G0015991.1 mouse_genomes_project 1 50416357 50421196 + Nemp2 protein_coding retained_intron MGP_AJ_T0006018.1 MGP_AJ_G0005039.1 mouse_genomes_project 1 181615421 181615920 + Gm37218 lincRNA lincRNA MGP_AJ_T0012062.1 MGP_AJ_G0010157.1 mouse_genomes_project 1 59040747 59043374 - processed_pseudogene processed_pseudogene MGP_AJ_T0018805.1 MGP_AJ_G0015805.1 mouse_genomes_project 1 6848107 6850155 + MGP_AJ_P0018805 Rrs1 protein_coding protein_coding MGP_AJ_T0022764.1 MGP_AJ_G0016600.1 mouse_genomes_project 1 154534423 154572407 + MGP_AJ_P0022764 Tor1aip2 protein_coding protein_coding MGP_AJ_T0022765.1 MGP_AJ_G0016600.1 mouse_genomes_project 1 154534746 154556785 + MGP_AJ_P0022765 Tor1aip2 protein_coding protein_coding MGP_AJ_T0022766.1 MGP_AJ_G0016600.1 mouse_genomes_project 1 154534792 154562770 + MGP_AJ_P0022766 Tor1aip2 protein_coding protein_coding MGP_AJ_T0022767.1 MGP_AJ_G0016600.1 mouse_genomes_project 1 154535153 154556992 + MGP_AJ_P0022767 Tor1aip2 protein_coding protein_coding MGP_AJ_T0022768.1 MGP_AJ_G0016600.1 mouse_genomes_project 1 154540007 154552972 + Tor1aip2 protein_coding processed_transcript MGP_AJ_T0022769.1 MGP_AJ_G0016600.1 mouse_genomes_project 1 154540007 154572407 + MGP_AJ_P0022769 Tor1aip2 protein_coding protein_coding MGP_AJ_T0022770.1 MGP_AJ_G0016600.1 mouse_genomes_project 1 154540034 154556992 + MGP_AJ_P0022770 Tor1aip2 protein_coding protein_coding MGP_AJ_T0022771.1 MGP_AJ_G0016600.1 mouse_genomes_project 1 154540034 154556992 + MGP_AJ_P0022771 Tor1aip2 protein_coding protein_coding MGP_AJ_T0022772.1 MGP_AJ_G0016600.1 mouse_genomes_project 1 154566771 154568399 + Tor1aip2 protein_coding retained_intron MGP_AJ_T0019901.1 MGP_AJ_G0016024.1 mouse_genomes_project 1 55228917 55240676 + MGP_AJ_P0019901 9430016H08Rik protein_coding protein_coding MGP_AJ_T0019902.1 MGP_AJ_G0016024.1 mouse_genomes_project 1 55229348 55234353 + 9430016H08Rik protein_coding retained_intron MGP_AJ_T0024027.1 MGP_AJ_G0016887.1 mouse_genomes_project 1 183604533 183609971 - MGP_AJ_P0024027 Hlx protein_coding protein_coding MGP_AJ_T0024028.1 MGP_AJ_G0016887.1 mouse_genomes_project 1 183604540 183608977 - MGP_AJ_P0024028 Hlx protein_coding protein_coding MGP_AJ_T0012070.1 MGP_AJ_G0010165.1 mouse_genomes_project 1 60972679 60972925 + processed_pseudogene processed_pseudogene MGP_AJ_T0016989.1 MGP_AJ_G0015071.1 mouse_genomes_project 1 49858616 49936224 + Gm28177 processed_transcript processed_transcript MGP_AJ_T0020478.1 MGP_AJ_G0016131.1 mouse_genomes_project 1 72333917 72340974 + MGP_AJ_P0020478 Catip protein_coding protein_coding MGP_AJ_T0020479.1 MGP_AJ_G0016131.1 mouse_genomes_project 1 72334121 72339495 + MGP_AJ_P0020479 Catip protein_coding protein_coding MGP_AJ_T0020480.1 MGP_AJ_G0016131.1 mouse_genomes_project 1 72334197 72341051 + MGP_AJ_P0020480 Catip protein_coding protein_coding MGP_AJ_T0020481.1 MGP_AJ_G0016131.1 mouse_genomes_project 1 72336306 72338445 + Catip protein_coding retained_intron MGP_AJ_T0005657.1 MGP_AJ_G0004760.1 mouse_genomes_project 1 16647255 16648296 + Gm28340 lincRNA lincRNA MGP_AJ_T0017079.1 MGP_AJ_G0015097.1 mouse_genomes_project 1 168435904 168437426 - Gm15852 processed_transcript processed_transcript MGP_AJ_T0100413.1 MGP_AJ_G0038379.1 mouse_genomes_project 1 23970830 23970936 + Gm24064 snoRNA snoRNA MGP_AJ_T0009541.1 MGP_AJ_G0007663.1 mouse_genomes_project 1 153798351 153798475 + Gm22569 miRNA miRNA MGP_AJ_T0099160.1 MGP_AJ_G0037126.1 mouse_genomes_project 1 31585397 31585490 - Gm23792 snRNA snRNA MGP_AJ_T0023467.1 MGP_AJ_G0016745.1 mouse_genomes_project 1 170142009 170154902 + MGP_AJ_P0023467 Cd244 protein_coding protein_coding MGP_AJ_T0023468.1 MGP_AJ_G0016745.1 mouse_genomes_project 1 170142184 170179971 + MGP_AJ_P0023468 Cd244 protein_coding nonsense_mediated_decay MGP_AJ_T0023469.1 MGP_AJ_G0016745.1 mouse_genomes_project 1 170148477 170154902 + Cd244 protein_coding retained_intron MGP_AJ_T0022748.1 MGP_AJ_G0016598.1 mouse_genomes_project 1 154343171 154468934 - MGP_AJ_P0022748 Cep350 protein_coding protein_coding MGP_AJ_T0022749.1 MGP_AJ_G0016598.1 mouse_genomes_project 1 154346748 154359629 - Cep350 protein_coding processed_transcript MGP_AJ_T0022750.1 MGP_AJ_G0016598.1 mouse_genomes_project 1 154361583 154385395 - Cep350 protein_coding processed_transcript MGP_AJ_T0022751.1 MGP_AJ_G0016598.1 mouse_genomes_project 1 154366977 154384186 - Cep350 protein_coding processed_transcript MGP_AJ_T0022752.1 MGP_AJ_G0016598.1 mouse_genomes_project 1 154433046 154468569 - MGP_AJ_P0022752 Cep350 protein_coding protein_coding MGP_AJ_T0022753.1 MGP_AJ_G0016598.1 mouse_genomes_project 1 154465657 154468863 - Cep350 protein_coding retained_intron MGP_AJ_T0098813.1 MGP_AJ_G0036797.1 mouse_genomes_project 1 125670889 125671018 + Gm23370 scaRNA scaRNA MGP_AJ_T0000514.1 MGP_AJ_G0000455.1 mouse_genomes_project 1 71183032 71185542 - TEC TEC MGP_AJ_T0023409.1 MGP_AJ_G0016733.1 mouse_genomes_project 1 169862780 169868847 - MGP_AJ_P0023409 Usp21 protein_coding protein_coding MGP_AJ_T0023410.1 MGP_AJ_G0016733.1 mouse_genomes_project 1 169862784 169868780 - MGP_AJ_P0023410 Usp21 protein_coding protein_coding MGP_AJ_T0023411.1 MGP_AJ_G0016733.1 mouse_genomes_project 1 169862793 169863768 - Usp21 protein_coding retained_intron MGP_AJ_T0023412.1 MGP_AJ_G0016733.1 mouse_genomes_project 1 169862793 169868811 - MGP_AJ_P0023412 Usp21 protein_coding nonsense_mediated_decay MGP_AJ_T0023413.1 MGP_AJ_G0016733.1 mouse_genomes_project 1 169862793 169868817 - MGP_AJ_P0023413 Usp21 protein_coding protein_coding MGP_AJ_T0023414.1 MGP_AJ_G0016733.1 mouse_genomes_project 1 169863137 169864028 - Usp21 protein_coding retained_intron MGP_AJ_T0023415.1 MGP_AJ_G0016733.1 mouse_genomes_project 1 169863660 169865443 - Usp21 protein_coding retained_intron MGP_AJ_T0023416.1 MGP_AJ_G0016733.1 mouse_genomes_project 1 169863892 169864847 - Usp21 protein_coding retained_intron MGP_AJ_T0023417.1 MGP_AJ_G0016733.1 mouse_genomes_project 1 169864269 169866470 - Usp21 protein_coding retained_intron MGP_AJ_T0023418.1 MGP_AJ_G0016733.1 mouse_genomes_project 1 169864380 169867806 - Usp21 protein_coding retained_intron MGP_AJ_T0023419.1 MGP_AJ_G0016733.1 mouse_genomes_project 1 169865318 169868815 - Usp21 protein_coding retained_intron MGP_AJ_T0023420.1 MGP_AJ_G0016733.1 mouse_genomes_project 1 169865787 169867662 - MGP_AJ_P0023420 Usp21 protein_coding protein_coding MGP_AJ_T0099154.1 MGP_AJ_G0037120.1 mouse_genomes_project 1 29211047 29211154 - Gm23032 snRNA snRNA MGP_AJ_T0002904.1 MGP_AJ_G0002733.1 mouse_genomes_project 1 144808496 144881702 - Gm29514 antisense antisense MGP_AJ_T0002905.1 MGP_AJ_G0002733.1 mouse_genomes_project 1 144815870 144881811 - Gm29514 antisense antisense MGP_AJ_T0102194.1 MGP_AJ_G0039937.1 mouse_genomes_project 1 172455141 172510632 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0100476.1 MGP_AJ_G0038442.1 mouse_genomes_project 1 159518840 159518920 + Gm26224 snoRNA snoRNA MGP_AJ_T0012294.1 MGP_AJ_G0010389.1 mouse_genomes_project 1 153660402 153660983 + processed_pseudogene processed_pseudogene MGP_AJ_T0011241.1 MGP_AJ_G0009363.1 mouse_genomes_project 1 30297403 30297695 + Gm23024 misc_RNA misc_RNA MGP_AJ_T0000740.1 MGP_AJ_G0000679.1 mouse_genomes_project 1 171456348 171457209 + TEC TEC MGP_AJ_T0020796.1 MGP_AJ_G0016179.1 mouse_genomes_project 1 76053803 76153657 - MGP_AJ_P0020796 Pax3 protein_coding protein_coding MGP_AJ_T0020797.1 MGP_AJ_G0016179.1 mouse_genomes_project 1 76053806 76153953 - MGP_AJ_P0020797 Pax3 protein_coding protein_coding MGP_AJ_T0020798.1 MGP_AJ_G0016179.1 mouse_genomes_project 1 76140408 76153932 - Pax3 protein_coding processed_transcript MGP_AJ_T0009540.1 MGP_AJ_G0007662.1 mouse_genomes_project 1 152359560 152359671 + Mir8114 miRNA miRNA MGP_AJ_T0022628.1 MGP_AJ_G0016575.1 mouse_genomes_project 1 151382918 151548734 + MGP_AJ_P0022628 Nmnat2 protein_coding nonsense_mediated_decay MGP_AJ_T0022629.1 MGP_AJ_G0016575.1 mouse_genomes_project 1 151382923 151548831 + MGP_AJ_P0022629 Nmnat2 protein_coding protein_coding MGP_AJ_T0022630.1 MGP_AJ_G0016575.1 mouse_genomes_project 1 151382966 151523343 + MGP_AJ_P0022630 Nmnat2 protein_coding protein_coding MGP_AJ_T0022631.1 MGP_AJ_G0016575.1 mouse_genomes_project 1 151383199 151511612 + Nmnat2 protein_coding processed_transcript MGP_AJ_T0022632.1 MGP_AJ_G0016575.1 mouse_genomes_project 1 151465919 151508925 + Nmnat2 protein_coding retained_intron MGP_AJ_T0022633.1 MGP_AJ_G0016575.1 mouse_genomes_project 1 151522734 151523852 + Nmnat2 protein_coding processed_transcript MGP_AJ_T0012360.1 MGP_AJ_G0010455.1 mouse_genomes_project 1 182768451 182768598 + processed_pseudogene processed_pseudogene MGP_AJ_T0000554.1 MGP_AJ_G0000495.1 mouse_genomes_project 1 85901582 85902407 + TEC TEC MGP_AJ_T0000543.1 MGP_AJ_G0000484.1 mouse_genomes_project 1 82774447 82779178 - TEC TEC MGP_AJ_T0012029.1 MGP_AJ_G0010124.1 mouse_genomes_project 1 50639594 50640456 - processed_pseudogene processed_pseudogene MGP_AJ_T0019151.1 MGP_AJ_G0015879.1 mouse_genomes_project 1 28487356 28488823 - MGP_AJ_P0019151 protein_coding protein_coding MGP_AJ_T0009539.1 MGP_AJ_G0007661.1 mouse_genomes_project 1 149863937 149863995 + Mir7682 miRNA miRNA MGP_AJ_T0021434.1 MGP_AJ_G0016321.1 mouse_genomes_project 1 91560783 91591335 + MGP_AJ_P0021434 Ppp1r7 protein_coding protein_coding MGP_AJ_T0021435.1 MGP_AJ_G0016321.1 mouse_genomes_project 1 91561584 91570558 + MGP_AJ_P0021435 Ppp1r7 protein_coding protein_coding MGP_AJ_T0021436.1 MGP_AJ_G0016321.1 mouse_genomes_project 1 91561636 91570489 + MGP_AJ_P0021436 Ppp1r7 protein_coding nonsense_mediated_decay MGP_AJ_T0011987.1 MGP_AJ_G0010082.1 mouse_genomes_project 1 41601148 41601964 + processed_pseudogene processed_pseudogene MGP_AJ_T0021768.1 MGP_AJ_G0016394.1 mouse_genomes_project 1 119879700 119897531 - MGP_AJ_P0021768 Htr5b protein_coding protein_coding MGP_AJ_T0012130.1 MGP_AJ_G0010225.1 mouse_genomes_project 1 84338079 84338842 + processed_pseudogene processed_pseudogene MGP_AJ_T0023886.1 MGP_AJ_G0016857.1 mouse_genomes_project 1 179823988 179828431 + MGP_AJ_P0023886 Lefty1 protein_coding protein_coding MGP_AJ_T0023651.1 MGP_AJ_G0016805.1 mouse_genomes_project 1 172904361 172905407 + MGP_AJ_P0023651 Olfr420 protein_coding protein_coding MGP_AJ_T0005787.1 MGP_AJ_G0004854.1 mouse_genomes_project 1 71487226 71490742 - C530043A13Rik lincRNA lincRNA MGP_AJ_T0005788.1 MGP_AJ_G0004854.1 mouse_genomes_project 1 71487228 71490575 - C530043A13Rik lincRNA lincRNA MGP_AJ_T0005789.1 MGP_AJ_G0004854.1 mouse_genomes_project 1 71488345 71494904 - C530043A13Rik lincRNA lincRNA MGP_AJ_T0100456.1 MGP_AJ_G0038422.1 mouse_genomes_project 1 112028489 112028623 - Gm24937 snoRNA snoRNA MGP_AJ_T0021738.1 MGP_AJ_G0016387.1 mouse_genomes_project 1 118498888 118566520 + MGP_AJ_P0021738 3110009E18Rik protein_coding protein_coding MGP_AJ_T0021739.1 MGP_AJ_G0016387.1 mouse_genomes_project 1 118498896 118566520 + MGP_AJ_P0021739 3110009E18Rik protein_coding protein_coding MGP_AJ_T0021740.1 MGP_AJ_G0016387.1 mouse_genomes_project 1 118498901 118566520 + MGP_AJ_P0021740 3110009E18Rik protein_coding protein_coding MGP_AJ_T0021741.1 MGP_AJ_G0016387.1 mouse_genomes_project 1 118529101 118544028 + 3110009E18Rik protein_coding processed_transcript MGP_AJ_T0021742.1 MGP_AJ_G0016387.1 mouse_genomes_project 1 118529173 118548078 + MGP_AJ_P0021742 3110009E18Rik protein_coding protein_coding MGP_AJ_T0021743.1 MGP_AJ_G0016387.1 mouse_genomes_project 1 118539052 118552117 + 3110009E18Rik protein_coding processed_transcript MGP_AJ_T0022222.1 MGP_AJ_G0016496.1 mouse_genomes_project 1 133233362 133441308 - MGP_AJ_P0022222 Ppp1r12b protein_coding protein_coding MGP_AJ_T0022223.1 MGP_AJ_G0016496.1 mouse_genomes_project 1 133234267 133239086 - Ppp1r12b protein_coding processed_transcript MGP_AJ_T0022224.1 MGP_AJ_G0016496.1 mouse_genomes_project 1 133237797 133326207 - Ppp1r12b protein_coding processed_transcript MGP_AJ_T0022225.1 MGP_AJ_G0016496.1 mouse_genomes_project 1 133238701 133441219 - MGP_AJ_P0022225 Ppp1r12b protein_coding protein_coding MGP_AJ_T0022226.1 MGP_AJ_G0016496.1 mouse_genomes_project 1 133239141 133441318 - MGP_AJ_P0022226 Ppp1r12b protein_coding unknown_likely_coding MGP_AJ_T0022227.1 MGP_AJ_G0016496.1 mouse_genomes_project 1 133244641 133441308 - MGP_AJ_P0022227 Ppp1r12b protein_coding protein_coding MGP_AJ_T0022228.1 MGP_AJ_G0016496.1 mouse_genomes_project 1 133258098 133283626 - Ppp1r12b protein_coding retained_intron MGP_AJ_T0022229.1 MGP_AJ_G0016496.1 mouse_genomes_project 1 133259785 133262165 - Ppp1r12b protein_coding retained_intron MGP_AJ_T0022230.1 MGP_AJ_G0016496.1 mouse_genomes_project 1 133313829 133315588 - Ppp1r12b protein_coding processed_transcript MGP_AJ_T0022231.1 MGP_AJ_G0016496.1 mouse_genomes_project 1 133313832 133441296 - Ppp1r12b protein_coding retained_intron MGP_AJ_T0022232.1 MGP_AJ_G0016496.1 mouse_genomes_project 1 133433209 133441310 - MGP_AJ_P0022232 Ppp1r12b protein_coding protein_coding MGP_AJ_T0002789.1 MGP_AJ_G0002646.1 mouse_genomes_project 1 37328955 37336281 + D930019O06Rik antisense antisense MGP_AJ_T0012179.1 MGP_AJ_G0010274.1 mouse_genomes_project 1 106364126 106364312 - processed_pseudogene processed_pseudogene MGP_AJ_T0102141.1 MGP_AJ_G0039885.1 mouse_genomes_project 1 18675907 18676411 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0019468.1 MGP_AJ_G0015936.1 mouse_genomes_project 1 36526339 36559879 - MGP_AJ_P0019468 Chst10 protein_coding protein_coding MGP_AJ_T0019469.1 MGP_AJ_G0015936.1 mouse_genomes_project 1 36526339 36559958 - MGP_AJ_P0019469 Chst10 protein_coding protein_coding MGP_AJ_T0019470.1 MGP_AJ_G0015936.1 mouse_genomes_project 1 36526347 36534102 - MGP_AJ_P0019470 Chst10 protein_coding nonsense_mediated_decay MGP_AJ_T0019471.1 MGP_AJ_G0015936.1 mouse_genomes_project 1 36526349 36560030 - MGP_AJ_P0019471 Chst10 protein_coding protein_coding MGP_AJ_T0019472.1 MGP_AJ_G0015936.1 mouse_genomes_project 1 36532522 36560022 - MGP_AJ_P0019472 Chst10 protein_coding nonsense_mediated_decay MGP_AJ_T0019473.1 MGP_AJ_G0015936.1 mouse_genomes_project 1 36536301 36560003 - MGP_AJ_P0019473 Chst10 protein_coding protein_coding MGP_AJ_T0019474.1 MGP_AJ_G0015936.1 mouse_genomes_project 1 36552422 36559855 - Chst10 protein_coding retained_intron MGP_AJ_T0019475.1 MGP_AJ_G0015936.1 mouse_genomes_project 1 36552423 36559879 - Chst10 protein_coding retained_intron MGP_AJ_T0019543.1 MGP_AJ_G0015953.1 mouse_genomes_project 1 38202157 38238842 + MGP_AJ_P0019543 Il18rap protein_coding protein_coding MGP_AJ_T0019544.1 MGP_AJ_G0015953.1 mouse_genomes_project 1 38202200 38226140 + Il18rap protein_coding retained_intron MGP_AJ_T0019545.1 MGP_AJ_G0015953.1 mouse_genomes_project 1 38202243 38213557 + Il18rap protein_coding retained_intron MGP_AJ_T0019546.1 MGP_AJ_G0015953.1 mouse_genomes_project 1 38228347 38235040 + Il18rap protein_coding retained_intron MGP_AJ_T0000704.1 MGP_AJ_G0000643.1 mouse_genomes_project 1 158067836 158070073 + TEC TEC MGP_AJ_T0023781.1 MGP_AJ_G0016839.1 mouse_genomes_project 1 178432541 178517063 + MGP_AJ_P0023781 Cnst protein_coding protein_coding MGP_AJ_T0023782.1 MGP_AJ_G0016839.1 mouse_genomes_project 1 178432670 178469048 + Cnst protein_coding retained_intron MGP_AJ_T0023783.1 MGP_AJ_G0016839.1 mouse_genomes_project 1 178432680 178491851 + Cnst protein_coding retained_intron MGP_AJ_T0023784.1 MGP_AJ_G0016839.1 mouse_genomes_project 1 178479513 178494733 + Cnst protein_coding processed_transcript MGP_AJ_T0009499.1 MGP_AJ_G0007621.1 mouse_genomes_project 1 65533429 65533507 + Gm22548 miRNA miRNA MGP_AJ_T0019487.1 MGP_AJ_G0015941.1 mouse_genomes_project 1 37038185 37150911 - MGP_AJ_P0019487 Tbc1d8 protein_coding protein_coding MGP_AJ_T0019488.1 MGP_AJ_G0015941.1 mouse_genomes_project 1 37038557 37039135 - MGP_AJ_P0019488 Tbc1d8 protein_coding nonsense_mediated_decay MGP_AJ_T0019489.1 MGP_AJ_G0015941.1 mouse_genomes_project 1 37038997 37150817 - MGP_AJ_P0019489 Tbc1d8 protein_coding nonsense_mediated_decay MGP_AJ_T0019490.1 MGP_AJ_G0015941.1 mouse_genomes_project 1 37039989 37150856 - MGP_AJ_P0019490 Tbc1d8 protein_coding protein_coding MGP_AJ_T0019491.1 MGP_AJ_G0015941.1 mouse_genomes_project 1 37057866 37059302 - Tbc1d8 protein_coding retained_intron MGP_AJ_T0018939.1 MGP_AJ_G0015827.1 mouse_genomes_project 1 11479976 11623771 - MGP_AJ_P0018939 Eya1 protein_coding protein_coding MGP_AJ_T0018940.1 MGP_AJ_G0015827.1 mouse_genomes_project 1 11479980 11623806 - MGP_AJ_P0018940 Eya1 protein_coding protein_coding MGP_AJ_T0018941.1 MGP_AJ_G0015827.1 mouse_genomes_project 1 11480688 11623690 - MGP_AJ_P0018941 Eya1 protein_coding protein_coding MGP_AJ_T0018942.1 MGP_AJ_G0015827.1 mouse_genomes_project 1 11481665 11618119 - MGP_AJ_P0018942 Eya1 protein_coding protein_coding MGP_AJ_T0018943.1 MGP_AJ_G0015827.1 mouse_genomes_project 1 11521238 11544830 - MGP_AJ_P0018943 Eya1 protein_coding protein_coding MGP_AJ_T0018944.1 MGP_AJ_G0015827.1 mouse_genomes_project 1 11566067 11618168 - MGP_AJ_P0018944 Eya1 protein_coding protein_coding MGP_AJ_T0018945.1 MGP_AJ_G0015827.1 mouse_genomes_project 1 11583860 11618177 - MGP_AJ_P0018945 Eya1 protein_coding protein_coding MGP_AJ_T0018946.1 MGP_AJ_G0015827.1 mouse_genomes_project 1 11583928 11623407 - MGP_AJ_P0018946 Eya1 protein_coding protein_coding MGP_AJ_T0018947.1 MGP_AJ_G0015827.1 mouse_genomes_project 1 11614759 11623622 - Eya1 protein_coding retained_intron MGP_AJ_T0003003.1 MGP_AJ_G0002809.1 mouse_genomes_project 1 192037013 192042119 + Gm15872 antisense antisense MGP_AJ_T0099233.1 MGP_AJ_G0037199.1 mouse_genomes_project 1 179720996 179721104 + Gm24836 snRNA snRNA MGP_AJ_T0100435.1 MGP_AJ_G0038401.1 mouse_genomes_project 1 61078666 61078798 + Snora41 snoRNA snoRNA MGP_AJ_T0000455.1 MGP_AJ_G0000396.1 mouse_genomes_project 1 38271198 38275106 - TEC TEC MGP_AJ_T0012229.1 MGP_AJ_G0010324.1 mouse_genomes_project 1 123003324 123003730 - processed_pseudogene processed_pseudogene MGP_AJ_T0100431.1 MGP_AJ_G0038397.1 mouse_genomes_project 1 57610588 57610672 + Snord11 snoRNA snoRNA MGP_AJ_T0012033.1 MGP_AJ_G0010128.1 mouse_genomes_project 1 52872743 52873549 + processed_pseudogene processed_pseudogene MGP_AJ_T0012046.1 MGP_AJ_G0010141.1 mouse_genomes_project 1 56644515 56644966 + processed_pseudogene processed_pseudogene MGP_AJ_T0005693.1 MGP_AJ_G0004791.1 mouse_genomes_project 1 39222479 39225098 - Gm28634 lincRNA lincRNA MGP_AJ_T0011896.1 MGP_AJ_G0009991.1 mouse_genomes_project 1 14083352 14083770 - processed_pseudogene processed_pseudogene MGP_AJ_T0011918.1 MGP_AJ_G0010013.1 mouse_genomes_project 1 19654472 19654919 + processed_pseudogene processed_pseudogene MGP_AJ_T0012026.1 MGP_AJ_G0010121.1 mouse_genomes_project 1 50268753 50269749 - processed_pseudogene processed_pseudogene MGP_AJ_T0024081.1 MGP_AJ_G0016901.1 mouse_genomes_project 1 185917570 186082531 - MGP_AJ_P0024081 Spata17 protein_coding protein_coding MGP_AJ_T0024082.1 MGP_AJ_G0016901.1 mouse_genomes_project 1 185921337 186082512 - MGP_AJ_P0024082 Spata17 protein_coding protein_coding MGP_AJ_T0024083.1 MGP_AJ_G0016901.1 mouse_genomes_project 1 185976926 186009612 - MGP_AJ_P0024083 Spata17 protein_coding protein_coding MGP_AJ_T0024084.1 MGP_AJ_G0016901.1 mouse_genomes_project 1 185981720 186082503 - MGP_AJ_P0024084 Spata17 protein_coding protein_coding MGP_AJ_T0024085.1 MGP_AJ_G0016901.1 mouse_genomes_project 1 186002001 186009805 - MGP_AJ_P0024085 Spata17 protein_coding protein_coding MGP_AJ_T0024086.1 MGP_AJ_G0016901.1 mouse_genomes_project 1 186002001 186082487 - MGP_AJ_P0024086 Spata17 protein_coding protein_coding MGP_AJ_T0024087.1 MGP_AJ_G0016901.1 mouse_genomes_project 1 186002008 186009792 - Spata17 protein_coding processed_transcript MGP_AJ_T0024088.1 MGP_AJ_G0016901.1 mouse_genomes_project 1 186057847 186082512 - Spata17 protein_coding processed_transcript MGP_AJ_T0021929.1 MGP_AJ_G0016431.1 mouse_genomes_project 1 129492794 129537071 - MGP_AJ_P0021929 Mapkapk2 protein_coding protein_coding MGP_AJ_T0021930.1 MGP_AJ_G0016431.1 mouse_genomes_project 1 129495983 129511811 - MGP_AJ_P0021930 Mapkapk2 protein_coding protein_coding MGP_AJ_T0009501.1 MGP_AJ_G0007623.1 mouse_genomes_project 1 72172581 72172648 - Mir1928 miRNA miRNA MGP_AJ_T0012121.1 MGP_AJ_G0010216.1 mouse_genomes_project 1 80778714 80779105 - processed_pseudogene processed_pseudogene MGP_AJ_T0000798.1 MGP_AJ_G0000734.1 mouse_genomes_project 1 192135793 192138366 + TEC TEC MGP_AJ_T0000801.1 MGP_AJ_G0000737.1 mouse_genomes_project 1 193524774 193526638 + TEC TEC MGP_AJ_T0011862.1 MGP_AJ_G0009957.1 mouse_genomes_project 1 4198411 4199714 + processed_pseudogene processed_pseudogene MGP_AJ_T0021173.1 MGP_AJ_G0016257.1 mouse_genomes_project 1 86151555 86329783 + MGP_AJ_P0021173 protein_coding protein_coding MGP_AJ_T0021174.1 MGP_AJ_G0016257.1 mouse_genomes_project 1 86151557 86336423 + MGP_AJ_P0021174 protein_coding protein_coding MGP_AJ_T0021175.1 MGP_AJ_G0016257.1 mouse_genomes_project 1 86151607 86333317 + MGP_AJ_P0021175 protein_coding nonsense_mediated_decay MGP_AJ_T0021176.1 MGP_AJ_G0016257.1 mouse_genomes_project 1 86163432 86336423 + MGP_AJ_P0021176 protein_coding protein_coding MGP_AJ_T0012209.1 MGP_AJ_G0010304.1 mouse_genomes_project 1 117613200 117614000 - processed_pseudogene processed_pseudogene MGP_AJ_T0000683.1 MGP_AJ_G0000622.1 mouse_genomes_project 1 152167046 152168962 + TEC TEC MGP_AJ_T0002901.1 MGP_AJ_G0002730.1 mouse_genomes_project 1 134767515 134782513 + Gm26781 antisense antisense MGP_AJ_T0018936.1 MGP_AJ_G0015825.1 mouse_genomes_project 1 10950167 10988042 - MGP_AJ_P0018936 Lactb2 protein_coding protein_coding MGP_AJ_T0018937.1 MGP_AJ_G0015825.1 mouse_genomes_project 1 10955917 10964335 - Lactb2 protein_coding retained_intron MGP_AJ_T0000449.1 MGP_AJ_G0000390.1 mouse_genomes_project 1 35321071 35323288 - TEC TEC MGP_AJ_T0023638.1 MGP_AJ_G0016796.1 mouse_genomes_project 1 172631069 172653685 - MGP_AJ_P0023638 protein_coding protein_coding MGP_AJ_T0023640.1 MGP_AJ_G0016796.1 mouse_genomes_project 1 172641643 172654257 - protein_coding processed_transcript MGP_AJ_T0023850.1 MGP_AJ_G0016848.1 mouse_genomes_project 1 179308795 179360076 - MGP_AJ_P0023850 Stum protein_coding protein_coding MGP_AJ_T0023851.1 MGP_AJ_G0016848.1 mouse_genomes_project 1 179314690 179360113 - MGP_AJ_P0023851 Stum protein_coding protein_coding MGP_AJ_T0002844.1 MGP_AJ_G0002686.1 mouse_genomes_project 1 84286997 84314447 - Gm16341 antisense antisense MGP_AJ_T0023231.1 MGP_AJ_G0016688.1 mouse_genomes_project 1 165140056 165158657 - MGP_AJ_P0023231 Gm4847 protein_coding protein_coding MGP_AJ_T0022589.1 MGP_AJ_G0016566.1 mouse_genomes_project 1 150186455 150249441 + MGP_AJ_P0022589 Edem3 protein_coding protein_coding MGP_AJ_T0022590.1 MGP_AJ_G0016566.1 mouse_genomes_project 1 150186458 150252557 + MGP_AJ_P0022590 Edem3 protein_coding protein_coding MGP_AJ_T0022591.1 MGP_AJ_G0016566.1 mouse_genomes_project 1 150186544 150249485 + MGP_AJ_P0022591 Edem3 protein_coding protein_coding MGP_AJ_T0022592.1 MGP_AJ_G0016566.1 mouse_genomes_project 1 150186544 150249485 + MGP_AJ_P0022592 Edem3 protein_coding protein_coding MGP_AJ_T0020210.1 MGP_AJ_G0016074.1 mouse_genomes_project 1 61620321 61651839 - MGP_AJ_P0020210 Mdh1b protein_coding protein_coding MGP_AJ_T0024227.1 MGP_AJ_G0016928.1 mouse_genomes_project 1 190818134 190824610 + MGP_AJ_P0024227 Slc30a1 protein_coding protein_coding MGP_AJ_T0024228.1 MGP_AJ_G0016928.1 mouse_genomes_project 1 190818623 190820542 + MGP_AJ_P0024228 Slc30a1 protein_coding protein_coding MGP_AJ_T0021864.1 MGP_AJ_G0016411.1 mouse_genomes_project 1 126618261 126661207 - MGP_AJ_P0021864 Lct protein_coding protein_coding MGP_AJ_T0021865.1 MGP_AJ_G0016411.1 mouse_genomes_project 1 126621076 126626258 - Lct protein_coding retained_intron MGP_AJ_T0102179.1 MGP_AJ_G0039922.1 mouse_genomes_project 1 116040699 116067383 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0024199.1 MGP_AJ_G0016923.1 mouse_genomes_project 1 190256865 190299033 - MGP_AJ_P0024199 Ppp2r5a protein_coding protein_coding MGP_AJ_T0024200.1 MGP_AJ_G0016923.1 mouse_genomes_project 1 190259696 190261357 - Ppp2r5a protein_coding retained_intron MGP_AJ_T0024201.1 MGP_AJ_G0016923.1 mouse_genomes_project 1 190261225 190289390 - Ppp2r5a protein_coding processed_transcript MGP_AJ_T0024202.1 MGP_AJ_G0016923.1 mouse_genomes_project 1 190261851 190273625 - MGP_AJ_P0024202 Ppp2r5a protein_coding nonsense_mediated_decay MGP_AJ_T0024203.1 MGP_AJ_G0016923.1 mouse_genomes_project 1 190266595 190273614 - Ppp2r5a protein_coding retained_intron MGP_AJ_T0024204.1 MGP_AJ_G0016923.1 mouse_genomes_project 1 190276697 190301294 - Ppp2r5a protein_coding processed_transcript MGP_AJ_T0024205.1 MGP_AJ_G0016923.1 mouse_genomes_project 1 190300650 190305063 - Ppp2r5a protein_coding retained_intron MGP_AJ_T0000415.1 MGP_AJ_G0000357.1 mouse_genomes_project 1 23176496 23181046 - TEC TEC MGP_AJ_T0006051.1 MGP_AJ_G0005064.1 mouse_genomes_project 1 189303798 189335269 - Gm30725 lincRNA lincRNA MGP_AJ_T0005809.1 MGP_AJ_G0004870.1 mouse_genomes_project 1 78335443 78338873 + Gm29125 lincRNA lincRNA MGP_AJ_T0005857.1 MGP_AJ_G0004912.1 mouse_genomes_project 1 99565171 99580723 + Gm20268 lincRNA lincRNA MGP_AJ_T0101931.1 MGP_AJ_G0039784.1 mouse_genomes_project 1 95637311 95749245 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_AJ_T0101932.1 MGP_AJ_G0039784.1 mouse_genomes_project 1 95738946 95862985 + transcribed_unprocessed_pseudogene processed_transcript MGP_AJ_T0002907.1 MGP_AJ_G0002735.1 mouse_genomes_project 1 148722657 148753455 - antisense antisense MGP_AJ_T0000788.1 MGP_AJ_G0000725.1 mouse_genomes_project 1 187939860 187941399 + TEC TEC MGP_AJ_T0000368.1 MGP_AJ_G0000312.1 mouse_genomes_project 1 7522042 7523764 - TEC TEC MGP_AJ_T0000635.1 MGP_AJ_G0000575.1 mouse_genomes_project 1 133279653 133281743 - TEC TEC MGP_AJ_T0022118.1 MGP_AJ_G0016471.1 mouse_genomes_project 1 132062177 132068517 - MGP_AJ_P0022118 Snrpe protein_coding protein_coding MGP_AJ_T0022119.1 MGP_AJ_G0016471.1 mouse_genomes_project 1 132062195 132068347 - MGP_AJ_P0022119 Snrpe protein_coding nonsense_mediated_decay MGP_AJ_T0022120.1 MGP_AJ_G0016471.1 mouse_genomes_project 1 132064386 132068549 - MGP_AJ_P0022120 Snrpe protein_coding protein_coding MGP_AJ_T0022121.1 MGP_AJ_G0016471.1 mouse_genomes_project 1 132064822 132068225 - MGP_AJ_P0022121 Snrpe protein_coding protein_coding MGP_AJ_T0022122.1 MGP_AJ_G0016471.1 mouse_genomes_project 1 132067157 132068515 - MGP_AJ_P0022122 Snrpe protein_coding protein_coding MGP_AJ_T0012022.1 MGP_AJ_G0010117.1 mouse_genomes_project 1 49102690 49103715 - processed_pseudogene processed_pseudogene MGP_AJ_T0012372.1 MGP_AJ_G0010467.1 mouse_genomes_project 1 190386591 190387056 + processed_pseudogene processed_pseudogene MGP_AJ_T0022903.1 MGP_AJ_G0016623.1 mouse_genomes_project 1 158683029 158693539 - MGP_AJ_P0022903 Cacybp protein_coding protein_coding MGP_AJ_T0022904.1 MGP_AJ_G0016623.1 mouse_genomes_project 1 158686779 158693469 - MGP_AJ_P0022904 Cacybp protein_coding protein_coding MGP_AJ_T0022905.1 MGP_AJ_G0016623.1 mouse_genomes_project 1 158688750 158693390 - Cacybp protein_coding retained_intron MGP_AJ_T0018963.1 MGP_AJ_G0015834.1 mouse_genomes_project 1 13424901 13425689 - Rpl7 protein_coding processed_transcript MGP_AJ_T0018964.1 MGP_AJ_G0015834.1 mouse_genomes_project 1 13424901 13428264 - MGP_AJ_P0018964 Rpl7 protein_coding protein_coding MGP_AJ_T0018965.1 MGP_AJ_G0015834.1 mouse_genomes_project 1 13424912 13428009 - Rpl7 protein_coding retained_intron MGP_AJ_T0018966.1 MGP_AJ_G0015834.1 mouse_genomes_project 1 13425134 13426455 - Rpl7 protein_coding retained_intron MGP_AJ_T0018967.1 MGP_AJ_G0015834.1 mouse_genomes_project 1 13425386 13427834 - MGP_AJ_P0018967 Rpl7 protein_coding protein_coding MGP_AJ_T0018968.1 MGP_AJ_G0015834.1 mouse_genomes_project 1 13426097 13427991 - Rpl7 protein_coding retained_intron MGP_AJ_T0021640.1 MGP_AJ_G0016367.1 mouse_genomes_project 1 110168738 110174804 - Dsel protein_coding processed_transcript MGP_AJ_T0021641.1 MGP_AJ_G0016367.1 mouse_genomes_project 1 110168742 110174954 - MGP_AJ_P0021641 Dsel protein_coding protein_coding MGP_AJ_T0021642.1 MGP_AJ_G0016367.1 mouse_genomes_project 1 110173359 110174919 - Dsel protein_coding processed_transcript MGP_AJ_T0021643.1 MGP_AJ_G0016367.1 mouse_genomes_project 1 110174131 110174916 - Dsel protein_coding processed_transcript MGP_AJ_T0002950.1 MGP_AJ_G0002768.1 mouse_genomes_project 1 170069019 170072398 - B930036N10Rik antisense antisense MGP_AJ_T0002951.1 MGP_AJ_G0002768.1 mouse_genomes_project 1 170071091 170072398 - B930036N10Rik antisense antisense MGP_AJ_T0020329.1 MGP_AJ_G0016100.1 mouse_genomes_project 1 64815444 64835983 - MGP_AJ_P0020329 Myl1 protein_coding protein_coding MGP_AJ_T0020330.1 MGP_AJ_G0016100.1 mouse_genomes_project 1 64815444 64826459 - MGP_AJ_P0020330 Myl1 protein_coding protein_coding MGP_AJ_T0020331.1 MGP_AJ_G0016100.1 mouse_genomes_project 1 64815447 64826176 - MGP_AJ_P0020331 Myl1 protein_coding protein_coding MGP_AJ_T0020332.1 MGP_AJ_G0016100.1 mouse_genomes_project 1 64816152 64826172 - Myl1 protein_coding processed_transcript MGP_AJ_T0020333.1 MGP_AJ_G0016100.1 mouse_genomes_project 1 64817194 64826155 - MGP_AJ_P0020333 Myl1 protein_coding protein_coding MGP_AJ_T0020334.1 MGP_AJ_G0016100.1 mouse_genomes_project 1 64817790 64836224 - MGP_AJ_P0020334 Myl1 protein_coding protein_coding MGP_AJ_T0020335.1 MGP_AJ_G0016100.1 mouse_genomes_project 1 64820980 64825512 - Myl1 protein_coding retained_intron MGP_AJ_T0020336.1 MGP_AJ_G0016100.1 mouse_genomes_project 1 64835302 64836244 - Myl1 protein_coding retained_intron MGP_AJ_T0011890.1 MGP_AJ_G0009985.1 mouse_genomes_project 1 10740963 10741603 - processed_pseudogene processed_pseudogene MGP_AJ_T0012134.1 MGP_AJ_G0010229.1 mouse_genomes_project 1 85545536 85545659 + processed_pseudogene processed_pseudogene MGP_AJ_T0022398.1 MGP_AJ_G0016529.1 mouse_genomes_project 1 136786128 136801856 + MGP_AJ_P0022398 Atp6v1g3 protein_coding protein_coding MGP_AJ_T0011246.1 MGP_AJ_G0009368.1 mouse_genomes_project 1 57529517 57529602 + Gm24545 misc_RNA misc_RNA MGP_AJ_T0005659.1 MGP_AJ_G0004762.1 mouse_genomes_project 1 18245575 18248404 + Gm28065 lincRNA lincRNA MGP_AJ_T0012012.1 MGP_AJ_G0010107.1 mouse_genomes_project 1 46544444 46545375 + processed_pseudogene processed_pseudogene MGP_AJ_T0005958.1 MGP_AJ_G0004992.1 mouse_genomes_project 1 157593217 157629904 + 4930562F17Rik lincRNA lincRNA MGP_AJ_T0098373.1 MGP_AJ_G0036357.1 mouse_genomes_project 1 117897052 117898852 + pseudogene pseudogene MGP_AJ_T0023734.1 MGP_AJ_G0016826.1 mouse_genomes_project 1 175787462 176024106 - MGP_AJ_P0023734 Akt3 protein_coding protein_coding MGP_AJ_T0023735.1 MGP_AJ_G0016826.1 mouse_genomes_project 1 175789504 176024077 - MGP_AJ_P0023735 Akt3 protein_coding protein_coding MGP_AJ_T0023736.1 MGP_AJ_G0016826.1 mouse_genomes_project 1 175789505 176033472 - MGP_AJ_P0023736 Akt3 protein_coding protein_coding MGP_AJ_T0011979.1 MGP_AJ_G0010074.1 mouse_genomes_project 1 38039696 38040381 + processed_pseudogene processed_pseudogene MGP_AJ_T0000423.1 MGP_AJ_G0000365.1 mouse_genomes_project 1 28373774 28376804 - TEC TEC MGP_AJ_T0020493.1 MGP_AJ_G0016133.1 mouse_genomes_project 1 72363612 72367883 + MGP_AJ_P0020493 Ctdsp1 protein_coding protein_coding MGP_AJ_T0020494.1 MGP_AJ_G0016133.1 mouse_genomes_project 1 72364265 72366170 + MGP_AJ_P0020494 Ctdsp1 protein_coding protein_coding MGP_AJ_T0000480.1 MGP_AJ_G0000421.1 mouse_genomes_project 1 57712898 57716336 + TEC TEC MGP_AJ_T0023322.1 MGP_AJ_G0016715.1 mouse_genomes_project 1 169435485 169436307 + MGP_AJ_P0023322 Gm26620 protein_coding protein_coding MGP_AJ_T0099147.1 MGP_AJ_G0037113.1 mouse_genomes_project 1 7331439 7331543 - Gm24674 snRNA snRNA MGP_AJ_T0019075.1 MGP_AJ_G0015863.1 mouse_genomes_project 1 19704014 20200198 - MGP_AJ_P0019075 protein_coding protein_coding MGP_AJ_T0019076.1 MGP_AJ_G0015863.1 mouse_genomes_project 1 19704014 20200198 - MGP_AJ_P0019076 protein_coding protein_coding MGP_AJ_T0019077.1 MGP_AJ_G0015863.1 mouse_genomes_project 1 19704014 20200198 - MGP_AJ_P0019077 protein_coding protein_coding MGP_AJ_T0019078.1 MGP_AJ_G0015863.1 mouse_genomes_project 1 19704014 20200198 - MGP_AJ_P0019078 protein_coding protein_coding MGP_AJ_T0019079.1 MGP_AJ_G0015863.1 mouse_genomes_project 1 19704014 20200198 - MGP_AJ_P0019079 protein_coding protein_coding MGP_AJ_T0019080.1 MGP_AJ_G0015863.1 mouse_genomes_project 1 19704678 19734745 - MGP_AJ_P0019080 protein_coding protein_coding MGP_AJ_T0019081.1 MGP_AJ_G0015863.1 mouse_genomes_project 1 19706188 20200198 - MGP_AJ_P0019081 protein_coding unknown_likely_coding MGP_AJ_T0019082.1 MGP_AJ_G0015863.1 mouse_genomes_project 1 19706188 19851451 - MGP_AJ_P0019082 protein_coding protein_coding MGP_AJ_T0019083.1 MGP_AJ_G0015863.1 mouse_genomes_project 1 19855675 20200198 - MGP_AJ_P0019083 protein_coding protein_coding MGP_AJ_T0000531.1 MGP_AJ_G0000472.1 mouse_genomes_project 1 78706405 78708239 - TEC TEC MGP_AJ_T0021059.1 MGP_AJ_G0016236.1 mouse_genomes_project 1 85129934 85133539 - MGP_AJ_P0021059 Alpi protein_coding protein_coding MGP_AJ_T0011883.1 MGP_AJ_G0009978.1 mouse_genomes_project 1 8033664 8034172 + processed_pseudogene processed_pseudogene MGP_AJ_T0012013.1 MGP_AJ_G0010108.1 mouse_genomes_project 1 46639540 46640553 + processed_pseudogene processed_pseudogene MGP_AJ_T0021844.1 MGP_AJ_G0016409.1 mouse_genomes_project 1 126432941 126511954 + R3hdm1 protein_coding retained_intron MGP_AJ_T0021845.1 MGP_AJ_G0016409.1 mouse_genomes_project 1 126432961 126507956 + MGP_AJ_P0021845 R3hdm1 protein_coding protein_coding MGP_AJ_T0021846.1 MGP_AJ_G0016409.1 mouse_genomes_project 1 126432964 126570070 + MGP_AJ_P0021846 R3hdm1 protein_coding protein_coding MGP_AJ_T0021847.1 MGP_AJ_G0016409.1 mouse_genomes_project 1 126432964 126517678 + MGP_AJ_P0021847 R3hdm1 protein_coding protein_coding MGP_AJ_T0021848.1 MGP_AJ_G0016409.1 mouse_genomes_project 1 126432971 126441431 + R3hdm1 protein_coding retained_intron MGP_AJ_T0021849.1 MGP_AJ_G0016409.1 mouse_genomes_project 1 126470243 126515727 + MGP_AJ_P0021849 R3hdm1 protein_coding protein_coding MGP_AJ_T0021850.1 MGP_AJ_G0016409.1 mouse_genomes_project 1 126470266 126481607 + MGP_AJ_P0021850 R3hdm1 protein_coding protein_coding MGP_AJ_T0021851.1 MGP_AJ_G0016409.1 mouse_genomes_project 1 126480094 126508009 + MGP_AJ_P0021851 R3hdm1 protein_coding protein_coding MGP_AJ_T0021852.1 MGP_AJ_G0016409.1 mouse_genomes_project 1 126500454 126506968 + R3hdm1 protein_coding retained_intron MGP_AJ_T0021853.1 MGP_AJ_G0016409.1 mouse_genomes_project 1 126503517 126507944 + R3hdm1 protein_coding retained_intron MGP_AJ_T0021854.1 MGP_AJ_G0016409.1 mouse_genomes_project 1 126505661 126517478 + R3hdm1 protein_coding retained_intron MGP_AJ_T0021855.1 MGP_AJ_G0016409.1 mouse_genomes_project 1 126507969 126522328 + MGP_AJ_P0021855 R3hdm1 protein_coding protein_coding MGP_AJ_T0021856.1 MGP_AJ_G0016409.1 mouse_genomes_project 1 126510563 126540418 + MGP_AJ_P0021856 R3hdm1 protein_coding protein_coding MGP_AJ_T0021857.1 MGP_AJ_G0016409.1 mouse_genomes_project 1 126521659 126525368 + R3hdm1 protein_coding retained_intron MGP_AJ_T0021858.1 MGP_AJ_G0016409.1 mouse_genomes_project 1 126535878 126570069 + R3hdm1 protein_coding retained_intron MGP_AJ_T0021859.1 MGP_AJ_G0016409.1 mouse_genomes_project 1 126567712 126570070 + R3hdm1 protein_coding retained_intron MGP_AJ_T0021352.1 MGP_AJ_G0016301.1 mouse_genomes_project 1 90803344 90804435 + MGP_AJ_P0021352 Olfr1412 protein_coding protein_coding MGP_AJ_T0000462.1 MGP_AJ_G0000403.1 mouse_genomes_project 1 44684517 44688373 - TEC TEC MGP_AJ_T0009484.1 MGP_AJ_G0007606.1 mouse_genomes_project 1 40744453 40744538 + Gm24001 miRNA miRNA MGP_AJ_T0021615.1 MGP_AJ_G0016360.1 mouse_genomes_project 1 105337640 105357830 + MGP_AJ_P0021615 Serpinb13 protein_coding protein_coding MGP_AJ_T0021616.1 MGP_AJ_G0016360.1 mouse_genomes_project 1 105337650 105357533 + MGP_AJ_P0021616 Serpinb13 protein_coding nonsense_mediated_decay MGP_AJ_T0006064.1 MGP_AJ_G0005075.1 mouse_genomes_project 1 193076048 193086614 - 4930503O07Rik lincRNA lincRNA MGP_AJ_T0012216.1 MGP_AJ_G0010311.1 mouse_genomes_project 1 119216834 119217044 - processed_pseudogene processed_pseudogene MGP_AJ_T0011247.1 MGP_AJ_G0009369.1 mouse_genomes_project 1 61077645 61077821 + Gm27390 misc_RNA misc_RNA MGP_AJ_T0000418.1 MGP_AJ_G0000360.1 mouse_genomes_project 1 23209981 23210997 - TEC TEC MGP_AJ_T0012324.1 MGP_AJ_G0010419.1 mouse_genomes_project 1 165282226 165284010 + processed_pseudogene processed_pseudogene MGP_AJ_T0000793.1 MGP_AJ_G0000730.1 mouse_genomes_project 1 190506159 190506788 + TEC TEC MGP_AJ_T0021056.1 MGP_AJ_G0016235.1 mouse_genomes_project 1 85117734 85120952 - MGP_AJ_P0021056 Alppl2 protein_coding protein_coding MGP_AJ_T0021057.1 MGP_AJ_G0016235.1 mouse_genomes_project 1 85117735 85120969 - MGP_AJ_P0021057 Alppl2 protein_coding protein_coding MGP_AJ_T0021058.1 MGP_AJ_G0016235.1 mouse_genomes_project 1 85119820 85120846 - Alppl2 protein_coding retained_intron MGP_AJ_T0012147.1 MGP_AJ_G0010242.1 mouse_genomes_project 1 92452494 92453336 + processed_pseudogene processed_pseudogene MGP_AJ_T0024029.1 MGP_AJ_G0016888.1 mouse_genomes_project 1 183665827 183689489 - MGP_AJ_P0024029 Marc1 protein_coding protein_coding MGP_AJ_T0024030.1 MGP_AJ_G0016888.1 mouse_genomes_project 1 183666769 183689305 - MGP_AJ_P0024030 Marc1 protein_coding protein_coding MGP_AJ_T0019178.1 MGP_AJ_G0015887.1 mouse_genomes_project 1 31343926 31356212 - MGP_AJ_P0019178 Bag2 protein_coding protein_coding MGP_AJ_T0019179.1 MGP_AJ_G0015887.1 mouse_genomes_project 1 31345181 31347162 - Bag2 protein_coding retained_intron MGP_AJ_T0019180.1 MGP_AJ_G0015887.1 mouse_genomes_project 1 31345244 31356158 - MGP_AJ_P0019180 Bag2 protein_coding protein_coding MGP_AJ_T0019181.1 MGP_AJ_G0015887.1 mouse_genomes_project 1 31355191 31356144 - Bag2 protein_coding retained_intron MGP_AJ_T0002925.1 MGP_AJ_G0002750.1 mouse_genomes_project 1 159524849 159525637 + Gm37634 antisense antisense MGP_AJ_T0002954.1 MGP_AJ_G0002771.1 mouse_genomes_project 1 170657043 170659806 - Gm37756 antisense antisense MGP_AJ_T0000353.1 MGP_AJ_G0000297.1 mouse_genomes_project 1 1470317 1471801 - TEC TEC MGP_AJ_T0022963.1 MGP_AJ_G0016631.1 mouse_genomes_project 1 159628760 159650836 + MGP_AJ_P0022963 Ankrd45 protein_coding protein_coding MGP_AJ_T0022964.1 MGP_AJ_G0016631.1 mouse_genomes_project 1 159628869 159649637 + MGP_AJ_P0022964 Ankrd45 protein_coding protein_coding MGP_AJ_T0022965.1 MGP_AJ_G0016631.1 mouse_genomes_project 1 159628890 159656562 + MGP_AJ_P0022965 Ankrd45 protein_coding protein_coding MGP_AJ_T0022966.1 MGP_AJ_G0016631.1 mouse_genomes_project 1 159628901 159653976 + MGP_AJ_P0022966 Ankrd45 protein_coding nonsense_mediated_decay MGP_AJ_T0022967.1 MGP_AJ_G0016631.1 mouse_genomes_project 1 159628918 159650556 + MGP_AJ_P0022967 Ankrd45 protein_coding nonsense_mediated_decay MGP_AJ_T0020998.1 MGP_AJ_G0016222.1 mouse_genomes_project 1 84070298 84076683 + protein_coding retained_intron MGP_AJ_T0020999.1 MGP_AJ_G0016222.1 mouse_genomes_project 1 84070298 84077567 + protein_coding processed_transcript MGP_AJ_T0021000.1 MGP_AJ_G0016222.1 mouse_genomes_project 1 84070531 84138139 + MGP_AJ_P0021000 protein_coding nonsense_mediated_decay MGP_AJ_T0021001.1 MGP_AJ_G0016222.1 mouse_genomes_project 1 84070531 84144503 + MGP_AJ_P0021001 protein_coding protein_coding MGP_AJ_T0021002.1 MGP_AJ_G0016222.1 mouse_genomes_project 1 84070553 84073575 + protein_coding retained_intron MGP_AJ_T0021003.1 MGP_AJ_G0016222.1 mouse_genomes_project 1 84070604 84078191 + protein_coding retained_intron MGP_AJ_T0021004.1 MGP_AJ_G0016222.1 mouse_genomes_project 1 84070783 84081377 + protein_coding processed_transcript MGP_AJ_T0021007.1 MGP_AJ_G0016222.1 mouse_genomes_project 1 84116376 84138190 + protein_coding processed_transcript MGP_AJ_T0021008.1 MGP_AJ_G0016222.1 mouse_genomes_project 1 84133251 84138157 + protein_coding retained_intron MGP_AJ_T0100436.1 MGP_AJ_G0038402.1 mouse_genomes_project 1 64212213 64212350 + Gm24729 snoRNA snoRNA MGP_AJ_T0002898.1 MGP_AJ_G0002727.1 mouse_genomes_project 1 134090527 134105713 + Gm4793 antisense antisense MGP_AJ_T0011879.1 MGP_AJ_G0009974.1 mouse_genomes_project 1 6848243 6849253 + processed_pseudogene processed_pseudogene MGP_AJ_T0012273.1 MGP_AJ_G0010368.1 mouse_genomes_project 1 147001119 147001909 - processed_pseudogene processed_pseudogene MGP_AJ_T0019939.1 MGP_AJ_G0016031.1 mouse_genomes_project 1 56103900 56202698 + MGP_AJ_P0019939 Aox2 protein_coding protein_coding MGP_AJ_T0019940.1 MGP_AJ_G0016031.1 mouse_genomes_project 1 56108119 56198742 + MGP_AJ_P0019940 Aox2 protein_coding unknown_likely_coding MGP_AJ_T0023869.1 MGP_AJ_G0016851.1 mouse_genomes_project 1 179571583 179575371 - MGP_AJ_P0023869 Mixl1 protein_coding protein_coding MGP_AJ_T0022175.1 MGP_AJ_G0016485.1 mouse_genomes_project 1 132752807 132755367 + MGP_AJ_P0022175 Myog protein_coding protein_coding MGP_AJ_T0005988.1 MGP_AJ_G0005016.1 mouse_genomes_project 1 165792155 165792854 + Gm2453 lincRNA lincRNA MGP_AJ_T0005989.1 MGP_AJ_G0005016.1 mouse_genomes_project 1 165792571 165796944 + Gm2453 lincRNA lincRNA MGP_AJ_T0000806.1 MGP_AJ_G0000742.1 mouse_genomes_project 1 193891853 193894661 + TEC TEC MGP_AJ_T0019580.1 MGP_AJ_G0015963.1 mouse_genomes_project 1 40829617 40870159 - MGP_AJ_P0019580 Fhl2 protein_coding protein_coding MGP_AJ_T0000708.1 MGP_AJ_G0000647.1 mouse_genomes_project 1 159068145 159069410 - TEC TEC MGP_AJ_T0021023.1 MGP_AJ_G0016226.1 mouse_genomes_project 1 84315912 84317788 + B3gnt7 protein_coding retained_intron MGP_AJ_T0021024.1 MGP_AJ_G0016226.1 mouse_genomes_project 1 84316314 84320385 + MGP_AJ_P0021024 B3gnt7 protein_coding protein_coding MGP_AJ_T0021025.1 MGP_AJ_G0016226.1 mouse_genomes_project 1 84316611 84318929 + MGP_AJ_P0021025 B3gnt7 protein_coding protein_coding MGP_AJ_T0012288.1 MGP_AJ_G0010383.1 mouse_genomes_project 1 151154494 151156103 - processed_pseudogene processed_pseudogene MGP_AJ_T0002979.1 MGP_AJ_G0002793.1 mouse_genomes_project 1 186214343 186246769 - Gm38155 antisense antisense MGP_AJ_T0019005.1 MGP_AJ_G0015839.1 mouse_genomes_project 1 13992779 14007075 + MGP_AJ_P0019005 Tmem70 protein_coding protein_coding MGP_AJ_T0019006.1 MGP_AJ_G0015839.1 mouse_genomes_project 1 13992782 14006094 + Tmem70 protein_coding processed_transcript MGP_AJ_T0019007.1 MGP_AJ_G0015839.1 mouse_genomes_project 1 13992782 14007155 + MGP_AJ_P0019007 Tmem70 protein_coding protein_coding MGP_AJ_T0019008.1 MGP_AJ_G0015839.1 mouse_genomes_project 1 13992808 13993384 + Tmem70 protein_coding processed_transcript MGP_AJ_T0021065.1 MGP_AJ_G0016239.1 mouse_genomes_project 1 85211575 85216668 + MGP_AJ_P0021065 Prss56 protein_coding protein_coding MGP_AJ_T0023007.1 MGP_AJ_G0016640.1 mouse_genomes_project 1 161031767 161048192 - MGP_AJ_P0023007 Mettl13 protein_coding protein_coding MGP_AJ_T0023008.1 MGP_AJ_G0016640.1 mouse_genomes_project 1 161033319 161048163 - MGP_AJ_P0023008 Mettl13 protein_coding nonsense_mediated_decay MGP_AJ_T0023009.1 MGP_AJ_G0016640.1 mouse_genomes_project 1 161035482 161044003 - MGP_AJ_P0023009 Mettl13 protein_coding protein_coding MGP_AJ_T0023010.1 MGP_AJ_G0016640.1 mouse_genomes_project 1 161036783 161047897 - Mettl13 protein_coding processed_transcript MGP_AJ_T0023011.1 MGP_AJ_G0016640.1 mouse_genomes_project 1 161038560 161046168 - MGP_AJ_P0023011 Mettl13 protein_coding nonsense_mediated_decay MGP_AJ_T0023012.1 MGP_AJ_G0016640.1 mouse_genomes_project 1 161041089 161048179 - Mettl13 protein_coding retained_intron MGP_AJ_T0023013.1 MGP_AJ_G0016640.1 mouse_genomes_project 1 161043276 161048169 - Mettl13 protein_coding retained_intron MGP_AJ_T0023014.1 MGP_AJ_G0016640.1 mouse_genomes_project 1 161046468 161048170 - Mettl13 protein_coding retained_intron MGP_AJ_T0021928.1 MGP_AJ_G0016430.1 mouse_genomes_project 1 129458890 129464020 + MGP_AJ_P0021928 Il10 protein_coding protein_coding MGP_AJ_T0012112.1 MGP_AJ_G0010207.1 mouse_genomes_project 1 77873136 77874247 - processed_pseudogene processed_pseudogene MGP_AJ_T0006045.1 MGP_AJ_G0005059.1 mouse_genomes_project 1 185623057 185626576 + A430105J06Rik lincRNA lincRNA MGP_AJ_T0100455.1 MGP_AJ_G0038421.1 mouse_genomes_project 1 110751361 110751497 + Gm22331 snoRNA snoRNA MGP_AJ_T0100427.1 MGP_AJ_G0038393.1 mouse_genomes_project 1 56966145 56966276 + Gm25502 snoRNA snoRNA MGP_AJ_T0019398.1 MGP_AJ_G0015923.1 mouse_genomes_project 1 35067224 35168483 - MGP_AJ_P0019398 Mgat4a protein_coding protein_coding MGP_AJ_T0019399.1 MGP_AJ_G0015923.1 mouse_genomes_project 1 35071595 35163885 - MGP_AJ_P0019399 Mgat4a protein_coding protein_coding MGP_AJ_T0019400.1 MGP_AJ_G0015923.1 mouse_genomes_project 1 35091053 35123671 - MGP_AJ_P0019400 Mgat4a protein_coding nonsense_mediated_decay MGP_AJ_T0019401.1 MGP_AJ_G0015923.1 mouse_genomes_project 1 35091056 35123633 - MGP_AJ_P0019401 Mgat4a protein_coding protein_coding MGP_AJ_T0019402.1 MGP_AJ_G0015923.1 mouse_genomes_project 1 35123263 35126376 - Mgat4a protein_coding retained_intron MGP_AJ_T0019403.1 MGP_AJ_G0015923.1 mouse_genomes_project 1 35160695 35163732 - Mgat4a protein_coding retained_intron MGP_AJ_T0006048.1 MGP_AJ_G0005061.1 mouse_genomes_project 1 186312793 186327695 + Gm37896 lincRNA lincRNA MGP_AJ_T0017046.1 MGP_AJ_G0015092.1 mouse_genomes_project 1 151840721 151853224 - processed_transcript processed_transcript MGP_AJ_T0017047.1 MGP_AJ_G0015092.1 mouse_genomes_project 1 151840721 151847598 - processed_transcript retained_intron MGP_AJ_T0005820.1 MGP_AJ_G0004879.1 mouse_genomes_project 1 86635326 86655395 - Gm29538 lincRNA lincRNA MGP_AJ_T0002955.1 MGP_AJ_G0002772.1 mouse_genomes_project 1 170781229 170781889 + Gm17224 antisense antisense MGP_AJ_T0022977.1 MGP_AJ_G0016633.1 mouse_genomes_project 1 159887731 159910670 + MGP_AJ_P0022977 Tnfsf4 protein_coding protein_coding MGP_AJ_T0000644.1 MGP_AJ_G0000584.1 mouse_genomes_project 1 136321294 136321589 + TEC TEC MGP_AJ_T0024089.1 MGP_AJ_G0016902.1 mouse_genomes_project 1 186082573 186103273 + Gpatch2 protein_coding processed_transcript MGP_AJ_T0024090.1 MGP_AJ_G0016902.1 mouse_genomes_project 1 186082576 186219014 + MGP_AJ_P0024090 Gpatch2 protein_coding nonsense_mediated_decay MGP_AJ_T0024091.1 MGP_AJ_G0016902.1 mouse_genomes_project 1 186082587 186221070 + MGP_AJ_P0024091 Gpatch2 protein_coding protein_coding MGP_AJ_T0024092.1 MGP_AJ_G0016902.1 mouse_genomes_project 1 186082603 186173412 + Gpatch2 protein_coding retained_intron MGP_AJ_T0024093.1 MGP_AJ_G0016902.1 mouse_genomes_project 1 186082609 186101859 + MGP_AJ_P0024093 Gpatch2 protein_coding protein_coding MGP_AJ_T0024094.1 MGP_AJ_G0016902.1 mouse_genomes_project 1 186082611 186101343 + MGP_AJ_P0024094 Gpatch2 protein_coding nonsense_mediated_decay MGP_AJ_T0024095.1 MGP_AJ_G0016902.1 mouse_genomes_project 1 186082689 186217951 + MGP_AJ_P0024095 Gpatch2 protein_coding protein_coding MGP_AJ_T0024096.1 MGP_AJ_G0016902.1 mouse_genomes_project 1 186082808 186220097 + MGP_AJ_P0024096 Gpatch2 protein_coding protein_coding MGP_AJ_T0023954.1 MGP_AJ_G0016870.1 mouse_genomes_project 1 181077192 181078353 - MGP_AJ_P0023954 Vmn1r1 protein_coding protein_coding MGP_AJ_T0020996.1 MGP_AJ_G0016221.1 mouse_genomes_project 1 84051579 84061358 + MGP_AJ_P0020996 2810459M11Rik protein_coding protein_coding MGP_AJ_T0020997.1 MGP_AJ_G0016221.1 mouse_genomes_project 1 84051579 84059252 + MGP_AJ_P0020997 2810459M11Rik protein_coding protein_coding MGP_AJ_T0012240.1 MGP_AJ_G0010335.1 mouse_genomes_project 1 130727305 130727662 + processed_pseudogene processed_pseudogene MGP_AJ_T0000348.1 MGP_AJ_G0000292.1 mouse_genomes_project 1 548465 550774 - TEC TEC MGP_AJ_T0000764.1 MGP_AJ_G0000702.1 mouse_genomes_project 1 179251251 179254321 + TEC TEC MGP_AJ_T0003002.1 MGP_AJ_G0002808.1 mouse_genomes_project 1 191706774 191708098 + Gm15867 antisense antisense MGP_AJ_T0020958.1 MGP_AJ_G0016214.1 mouse_genomes_project 1 83629534 83693692 + MGP_AJ_P0020958 Sp100 protein_coding protein_coding MGP_AJ_T0020959.1 MGP_AJ_G0016214.1 mouse_genomes_project 1 83629560 83701313 + MGP_AJ_P0020959 Sp100 protein_coding protein_coding MGP_AJ_T0020960.1 MGP_AJ_G0016214.1 mouse_genomes_project 1 83629560 83675643 + MGP_AJ_P0020960 Sp100 protein_coding protein_coding MGP_AJ_T0020961.1 MGP_AJ_G0016214.1 mouse_genomes_project 1 83655251 83702115 + MGP_AJ_P0020961 Sp100 protein_coding protein_coding MGP_AJ_T0020962.1 MGP_AJ_G0016214.1 mouse_genomes_project 1 83664404 83675239 + Sp100 protein_coding processed_transcript MGP_AJ_T0020963.1 MGP_AJ_G0016214.1 mouse_genomes_project 1 83666296 83671849 + Sp100 protein_coding retained_intron MGP_AJ_T0020964.1 MGP_AJ_G0016214.1 mouse_genomes_project 1 83686069 83691802 + Sp100 protein_coding retained_intron MGP_AJ_T0020965.1 MGP_AJ_G0016214.1 mouse_genomes_project 1 83686427 83701521 + MGP_AJ_P0020965 Sp100 protein_coding protein_coding MGP_AJ_T0020966.1 MGP_AJ_G0016214.1 mouse_genomes_project 1 83695556 83700110 + MGP_AJ_P0020966 Sp100 protein_coding protein_coding MGP_AJ_T0102161.1 MGP_AJ_G0039904.1 mouse_genomes_project 1 86266320 86266571 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0012292.1 MGP_AJ_G0010387.1 mouse_genomes_project 1 152785402 152785955 - processed_pseudogene processed_pseudogene MGP_AJ_T0021464.1 MGP_AJ_G0016325.1 mouse_genomes_project 1 91731892 91841955 + MGP_AJ_P0021464 Farp2 protein_coding protein_coding MGP_AJ_T0021465.1 MGP_AJ_G0016325.1 mouse_genomes_project 1 91731925 91801656 + MGP_AJ_P0021465 Farp2 protein_coding protein_coding MGP_AJ_T0000431.1 MGP_AJ_G0000373.1 mouse_genomes_project 1 31267613 31268502 + TEC TEC MGP_AJ_T0000432.1 MGP_AJ_G0000373.1 mouse_genomes_project 1 31267632 31268502 + TEC TEC MGP_AJ_T0020981.1 MGP_AJ_G0016218.1 mouse_genomes_project 1 83930749 83934021 + MGP_AJ_P0020981 4933407L21Rik protein_coding protein_coding MGP_AJ_T0020982.1 MGP_AJ_G0016218.1 mouse_genomes_project 1 83930993 83942880 + MGP_AJ_P0020982 4933407L21Rik protein_coding protein_coding MGP_AJ_T0020983.1 MGP_AJ_G0016218.1 mouse_genomes_project 1 83931152 83934021 + 4933407L21Rik protein_coding retained_intron MGP_AJ_T0016966.1 MGP_AJ_G0015061.1 mouse_genomes_project 1 1604655 1607483 + Gm37587 processed_transcript retained_intron MGP_AJ_T0016967.1 MGP_AJ_G0015061.1 mouse_genomes_project 1 1605578 1607663 + Gm37587 processed_transcript antisense MGP_AJ_T0020532.1 MGP_AJ_G0016140.1 mouse_genomes_project 1 72572220 72582748 - MGP_AJ_P0020532 Rnf25 protein_coding protein_coding MGP_AJ_T0020533.1 MGP_AJ_G0016140.1 mouse_genomes_project 1 72572220 72582723 - MGP_AJ_P0020533 Rnf25 protein_coding nonsense_mediated_decay MGP_AJ_T0020534.1 MGP_AJ_G0016140.1 mouse_genomes_project 1 72572225 72582728 - MGP_AJ_P0020534 Rnf25 protein_coding protein_coding MGP_AJ_T0020535.1 MGP_AJ_G0016140.1 mouse_genomes_project 1 72572694 72573274 - Rnf25 protein_coding retained_intron MGP_AJ_T0020536.1 MGP_AJ_G0016140.1 mouse_genomes_project 1 72573681 72581915 - MGP_AJ_P0020536 Rnf25 protein_coding protein_coding MGP_AJ_T0020537.1 MGP_AJ_G0016140.1 mouse_genomes_project 1 72574357 72581950 - MGP_AJ_P0020537 Rnf25 protein_coding protein_coding MGP_AJ_T0020538.1 MGP_AJ_G0016140.1 mouse_genomes_project 1 72579532 72579947 - Rnf25 protein_coding retained_intron MGP_AJ_T0020539.1 MGP_AJ_G0016140.1 mouse_genomes_project 1 72579712 72582696 - MGP_AJ_P0020539 Rnf25 protein_coding protein_coding MGP_AJ_T0020540.1 MGP_AJ_G0016140.1 mouse_genomes_project 1 72579899 72582745 - Rnf25 protein_coding retained_intron MGP_AJ_T0020541.1 MGP_AJ_G0016140.1 mouse_genomes_project 1 72580082 72582716 - MGP_AJ_P0020541 Rnf25 protein_coding protein_coding MGP_AJ_T0005938.1 MGP_AJ_G0004977.1 mouse_genomes_project 1 149403910 149407452 + Gm29188 lincRNA lincRNA MGP_AJ_T0012106.1 MGP_AJ_G0010201.1 mouse_genomes_project 1 73573685 73574492 + processed_pseudogene processed_pseudogene MGP_AJ_T0000489.1 MGP_AJ_G0000430.1 mouse_genomes_project 1 59579309 59582045 + TEC TEC MGP_AJ_T0011871.1 MGP_AJ_G0009966.1 mouse_genomes_project 1 5740400 5740800 - processed_pseudogene processed_pseudogene MGP_AJ_T0002747.1 MGP_AJ_G0002617.1 mouse_genomes_project 1 7060458 7107836 + 1700034P13Rik antisense antisense MGP_AJ_T0002748.1 MGP_AJ_G0002617.1 mouse_genomes_project 1 7060766 7107371 + 1700034P13Rik antisense antisense MGP_AJ_T0002749.1 MGP_AJ_G0002617.1 mouse_genomes_project 1 7061291 7082823 + 1700034P13Rik antisense antisense MGP_AJ_T0002750.1 MGP_AJ_G0002617.1 mouse_genomes_project 1 7061397 7082662 + 1700034P13Rik antisense antisense MGP_AJ_T0002751.1 MGP_AJ_G0002617.1 mouse_genomes_project 1 7098818 7107218 + 1700034P13Rik antisense antisense MGP_AJ_T0005746.1 MGP_AJ_G0004824.1 mouse_genomes_project 1 58697624 58717961 + 2310016D23Rik lincRNA lincRNA MGP_AJ_T0006039.1 MGP_AJ_G0005054.1 mouse_genomes_project 1 184235056 184240617 - 4930532G15Rik lincRNA lincRNA MGP_AJ_T0009508.1 MGP_AJ_G0007630.1 mouse_genomes_project 1 80079722 80079826 + Mir6344 miRNA miRNA MGP_AJ_T0000504.1 MGP_AJ_G0000445.1 mouse_genomes_project 1 65820527 65822828 + TEC TEC MGP_AJ_T0002991.1 MGP_AJ_G0002803.1 mouse_genomes_project 1 190732412 190734036 - Gm38037 antisense antisense MGP_AJ_T0021648.1 MGP_AJ_G0016371.1 mouse_genomes_project 1 116306053 116324751 + MGP_AJ_P0021648 protein_coding protein_coding MGP_AJ_T0000490.1 MGP_AJ_G0000431.1 mouse_genomes_project 1 59595678 59598640 + TEC TEC MGP_AJ_T0022506.1 MGP_AJ_G0016554.1 mouse_genomes_project 1 148171242 148275005 - MGP_AJ_P0022506 Pla2g4a protein_coding protein_coding MGP_AJ_T0022507.1 MGP_AJ_G0016554.1 mouse_genomes_project 1 148171253 148264701 - MGP_AJ_P0022507 Pla2g4a protein_coding protein_coding MGP_AJ_T0022508.1 MGP_AJ_G0016554.1 mouse_genomes_project 1 148227666 148306711 - MGP_AJ_P0022508 Pla2g4a protein_coding protein_coding MGP_AJ_T0022509.1 MGP_AJ_G0016554.1 mouse_genomes_project 1 148227706 148243641 - Pla2g4a protein_coding processed_transcript MGP_AJ_T0022510.1 MGP_AJ_G0016554.1 mouse_genomes_project 1 148261138 148306737 - Pla2g4a protein_coding retained_intron MGP_AJ_T0022511.1 MGP_AJ_G0016554.1 mouse_genomes_project 1 148274809 148306708 - Pla2g4a protein_coding processed_transcript MGP_AJ_T0100467.1 MGP_AJ_G0038433.1 mouse_genomes_project 1 138502786 138502928 + Gm26048 snoRNA snoRNA MGP_AJ_T0012316.1 MGP_AJ_G0010411.1 mouse_genomes_project 1 163002992 163003308 + processed_pseudogene processed_pseudogene MGP_AJ_T0023713.1 MGP_AJ_G0016824.1 mouse_genomes_project 1 175505771 175579110 - MGP_AJ_P0023713 Cep170 protein_coding protein_coding MGP_AJ_T0023714.1 MGP_AJ_G0016824.1 mouse_genomes_project 1 175505780 175527384 - MGP_AJ_P0023714 Cep170 protein_coding protein_coding MGP_AJ_T0023715.1 MGP_AJ_G0016824.1 mouse_genomes_project 1 175505780 175586679 - MGP_AJ_P0023715 Cep170 protein_coding protein_coding MGP_AJ_T0023716.1 MGP_AJ_G0016824.1 mouse_genomes_project 1 175505781 175565597 - MGP_AJ_P0023716 Cep170 protein_coding protein_coding MGP_AJ_T0023717.1 MGP_AJ_G0016824.1 mouse_genomes_project 1 175506219 175522561 - Cep170 protein_coding retained_intron MGP_AJ_T0023718.1 MGP_AJ_G0016824.1 mouse_genomes_project 1 175506257 175528567 - MGP_AJ_P0023718 Cep170 protein_coding protein_coding MGP_AJ_T0023719.1 MGP_AJ_G0016824.1 mouse_genomes_project 1 175506458 175565607 - MGP_AJ_P0023719 Cep170 protein_coding nonsense_mediated_decay MGP_AJ_T0023720.1 MGP_AJ_G0016824.1 mouse_genomes_project 1 175507267 175522210 - MGP_AJ_P0023720 Cep170 protein_coding protein_coding MGP_AJ_T0023721.1 MGP_AJ_G0016824.1 mouse_genomes_project 1 175507703 175526448 - Cep170 protein_coding processed_transcript MGP_AJ_T0023722.1 MGP_AJ_G0016824.1 mouse_genomes_project 1 175512599 175515221 - Cep170 protein_coding retained_intron MGP_AJ_T0023723.1 MGP_AJ_G0016824.1 mouse_genomes_project 1 175544794 175550288 - Cep170 protein_coding retained_intron MGP_AJ_T0023724.1 MGP_AJ_G0016824.1 mouse_genomes_project 1 175546553 175554287 - MGP_AJ_P0023724 Cep170 protein_coding protein_coding MGP_AJ_T0023725.1 MGP_AJ_G0016824.1 mouse_genomes_project 1 175550422 175586679 - MGP_AJ_P0023725 Cep170 protein_coding protein_coding MGP_AJ_T0023726.1 MGP_AJ_G0016824.1 mouse_genomes_project 1 175560375 175579116 - Cep170 protein_coding retained_intron MGP_AJ_T0023727.1 MGP_AJ_G0016824.1 mouse_genomes_project 1 175560452 175579110 - MGP_AJ_P0023727 Cep170 protein_coding protein_coding MGP_AJ_T0005972.1 MGP_AJ_G0005003.1 mouse_genomes_project 1 163143547 163151928 + lincRNA lincRNA MGP_AJ_T0011857.1 MGP_AJ_G0009952.1 mouse_genomes_project 1 3530515 3530988 - processed_pseudogene processed_pseudogene MGP_AJ_T0099213.1 MGP_AJ_G0037179.1 mouse_genomes_project 1 148045193 148045299 - Gm23535 snRNA snRNA MGP_AJ_T0023300.1 MGP_AJ_G0016707.1 mouse_genomes_project 1 168748713 168773336 + MGP_AJ_P0023300 Sh2d1b2 protein_coding protein_coding MGP_AJ_T0000365.1 MGP_AJ_G0000309.1 mouse_genomes_project 1 6579844 6583109 + TEC TEC MGP_AJ_T0023101.1 MGP_AJ_G0016662.1 mouse_genomes_project 1 162753842 162770979 + MGP_AJ_P0023101 Slc19a2 protein_coding protein_coding MGP_AJ_T0023102.1 MGP_AJ_G0016662.1 mouse_genomes_project 1 162753851 162770963 + MGP_AJ_P0023102 Slc19a2 protein_coding protein_coding MGP_AJ_T0023103.1 MGP_AJ_G0016662.1 mouse_genomes_project 1 162754049 162769112 + MGP_AJ_P0023103 Slc19a2 protein_coding protein_coding MGP_AJ_T0023104.1 MGP_AJ_G0016662.1 mouse_genomes_project 1 162767946 162769045 + Slc19a2 protein_coding retained_intron MGP_AJ_T0099167.1 MGP_AJ_G0037133.1 mouse_genomes_project 1 56293018 56293125 - Gm23966 snRNA snRNA MGP_AJ_T0020579.1 MGP_AJ_G0016150.1 mouse_genomes_project 1 72885882 72919407 - MGP_AJ_P0020579 Ccdc108 protein_coding protein_coding MGP_AJ_T0020580.1 MGP_AJ_G0016150.1 mouse_genomes_project 1 72906034 72919402 - Ccdc108 protein_coding retained_intron MGP_AJ_T0020581.1 MGP_AJ_G0016150.1 mouse_genomes_project 1 72907123 72919400 - Ccdc108 protein_coding retained_intron MGP_AJ_T0021223.1 MGP_AJ_G0016275.1 mouse_genomes_project 1 88404925 88417700 + MGP_AJ_P0021223 Ackr3 protein_coding protein_coding MGP_AJ_T0021224.1 MGP_AJ_G0016275.1 mouse_genomes_project 1 88404951 88414782 + MGP_AJ_P0021224 Ackr3 protein_coding protein_coding MGP_AJ_T0012174.1 MGP_AJ_G0010269.1 mouse_genomes_project 1 104315363 104315893 - processed_pseudogene processed_pseudogene MGP_AJ_T0005840.1 MGP_AJ_G0004898.1 mouse_genomes_project 1 90192374 90196138 + Gm26720 lincRNA lincRNA MGP_AJ_T0000717.1 MGP_AJ_G0000656.1 mouse_genomes_project 1 159469303 159470473 + TEC TEC MGP_AJ_T0019459.1 MGP_AJ_G0015934.1 mouse_genomes_project 1 35833838 36292734 - MGP_AJ_P0019459 Aff3 protein_coding protein_coding MGP_AJ_T0019460.1 MGP_AJ_G0015934.1 mouse_genomes_project 1 35833839 36330266 - MGP_AJ_P0019460 Aff3 protein_coding protein_coding MGP_AJ_T0019461.1 MGP_AJ_G0015934.1 mouse_genomes_project 1 35835967 36292690 - MGP_AJ_P0019461 Aff3 protein_coding unknown_likely_coding MGP_AJ_T0019462.1 MGP_AJ_G0015934.1 mouse_genomes_project 1 35837809 35857623 - Aff3 protein_coding processed_transcript MGP_AJ_T0019463.1 MGP_AJ_G0015934.1 mouse_genomes_project 1 35997455 36330266 - Aff3 protein_coding processed_transcript MGP_AJ_T0019464.1 MGP_AJ_G0015934.1 mouse_genomes_project 1 36200059 36330266 - MGP_AJ_P0019464 Aff3 protein_coding nonsense_mediated_decay MGP_AJ_T0099186.1 MGP_AJ_G0037152.1 mouse_genomes_project 1 91581055 91581158 + Gm26446 snRNA snRNA MGP_AJ_T0005661.1 MGP_AJ_G0004764.1 mouse_genomes_project 1 19404546 19407227 + Gm26580 lincRNA lincRNA MGP_AJ_T0023950.1 MGP_AJ_G0016869.1 mouse_genomes_project 1 181042652 181050417 + MGP_AJ_P0023950 Srp9 protein_coding protein_coding MGP_AJ_T0023951.1 MGP_AJ_G0016869.1 mouse_genomes_project 1 181042665 181050905 + MGP_AJ_P0023951 Srp9 protein_coding protein_coding MGP_AJ_T0023952.1 MGP_AJ_G0016869.1 mouse_genomes_project 1 181042696 181047079 + Srp9 protein_coding retained_intron MGP_AJ_T0023953.1 MGP_AJ_G0016869.1 mouse_genomes_project 1 181049246 181050303 + Srp9 protein_coding retained_intron MGP_AJ_T0002816.1 MGP_AJ_G0002667.1 mouse_genomes_project 1 59689752 59774622 - Pard3bos1 antisense antisense MGP_AJ_T0002817.1 MGP_AJ_G0002667.1 mouse_genomes_project 1 59708714 59774700 - Pard3bos1 antisense antisense MGP_AJ_T0011940.1 MGP_AJ_G0010035.1 mouse_genomes_project 1 28505689 28506333 - processed_pseudogene processed_pseudogene MGP_AJ_T0000558.1 MGP_AJ_G0000499.1 mouse_genomes_project 1 88024504 88026535 + TEC TEC MGP_AJ_T0012152.1 MGP_AJ_G0010247.1 mouse_genomes_project 1 96546272 96546560 + processed_pseudogene processed_pseudogene MGP_AJ_T0100493.1 MGP_AJ_G0038459.1 mouse_genomes_project 1 185559153 185559288 + Gm26169 snoRNA snoRNA MGP_AJ_T0002943.1 MGP_AJ_G0002763.1 mouse_genomes_project 1 165746325 165755349 + Gm37982 antisense antisense MGP_AJ_T0012320.1 MGP_AJ_G0010415.1 mouse_genomes_project 1 164244779 164245841 - processed_pseudogene processed_pseudogene MGP_AJ_T0016983.1 MGP_AJ_G0015067.1 mouse_genomes_project 1 37223392 37227861 - Gm15832 processed_transcript processed_transcript MGP_AJ_T0000494.1 MGP_AJ_G0000435.1 mouse_genomes_project 1 60708668 60711216 + TEC TEC MGP_AJ_T0000697.1 MGP_AJ_G0000636.1 mouse_genomes_project 1 155882138 155884535 - TEC TEC MGP_AJ_T0012285.1 MGP_AJ_G0010380.1 mouse_genomes_project 1 149949865 149950106 - processed_pseudogene processed_pseudogene MGP_AJ_T0022848.1 MGP_AJ_G0016614.1 mouse_genomes_project 1 155987874 156049736 + MGP_AJ_P0022848 Sec16b protein_coding protein_coding MGP_AJ_T0022849.1 MGP_AJ_G0016614.1 mouse_genomes_project 1 155987956 156049739 + MGP_AJ_P0022849 Sec16b protein_coding protein_coding MGP_AJ_T0022850.1 MGP_AJ_G0016614.1 mouse_genomes_project 1 156007115 156049736 + MGP_AJ_P0022850 Sec16b protein_coding protein_coding MGP_AJ_T0022851.1 MGP_AJ_G0016614.1 mouse_genomes_project 1 156014071 156043527 + MGP_AJ_P0022851 Sec16b protein_coding protein_coding MGP_AJ_T0022852.1 MGP_AJ_G0016614.1 mouse_genomes_project 1 156018991 156025256 + Sec16b protein_coding retained_intron MGP_AJ_T0000430.1 MGP_AJ_G0000372.1 mouse_genomes_project 1 31211788 31214855 - TEC TEC MGP_AJ_T0023446.1 MGP_AJ_G0016740.1 mouse_genomes_project 1 169965180 169986572 + Arhgap30 protein_coding retained_intron MGP_AJ_T0023447.1 MGP_AJ_G0016740.1 mouse_genomes_project 1 169965180 169986514 + Arhgap30 protein_coding retained_intron MGP_AJ_T0023448.1 MGP_AJ_G0016740.1 mouse_genomes_project 1 169965180 169986514 + MGP_AJ_P0023448 Arhgap30 protein_coding protein_coding MGP_AJ_T0023449.1 MGP_AJ_G0016740.1 mouse_genomes_project 1 169965225 169969011 + Arhgap30 protein_coding retained_intron MGP_AJ_T0000604.1 MGP_AJ_G0000545.1 mouse_genomes_project 1 124437928 124439250 - TEC TEC MGP_AJ_T0012151.1 MGP_AJ_G0010246.1 mouse_genomes_project 1 96542644 96543628 + processed_pseudogene processed_pseudogene MGP_AJ_T0099204.1 MGP_AJ_G0037170.1 mouse_genomes_project 1 133853533 133853639 - Gm22796 snRNA snRNA MGP_AJ_T0002768.1 MGP_AJ_G0002629.1 mouse_genomes_project 1 18486182 18487807 + Gm28287 antisense antisense MGP_AJ_T0009494.1 MGP_AJ_G0007616.1 mouse_genomes_project 1 61061406 61061491 + Gm24557 miRNA miRNA MGP_AJ_T0021294.1 MGP_AJ_G0016289.1 mouse_genomes_project 1 89567332 89592564 - MGP_AJ_P0021294 Ilkap protein_coding nonsense_mediated_decay MGP_AJ_T0021295.1 MGP_AJ_G0016289.1 mouse_genomes_project 1 89567336 89578388 - MGP_AJ_P0021295 Ilkap protein_coding protein_coding MGP_AJ_T0021296.1 MGP_AJ_G0016289.1 mouse_genomes_project 1 89569301 89592647 - MGP_AJ_P0021296 Ilkap protein_coding protein_coding MGP_AJ_T0021297.1 MGP_AJ_G0016289.1 mouse_genomes_project 1 89569302 89592619 - Ilkap protein_coding retained_intron MGP_AJ_T0021298.1 MGP_AJ_G0016289.1 mouse_genomes_project 1 89569429 89578335 - MGP_AJ_P0021298 Ilkap protein_coding protein_coding MGP_AJ_T0021299.1 MGP_AJ_G0016289.1 mouse_genomes_project 1 89569481 89572369 - Ilkap protein_coding retained_intron MGP_AJ_T0021300.1 MGP_AJ_G0016289.1 mouse_genomes_project 1 89569524 89592657 - MGP_AJ_P0021300 Ilkap protein_coding protein_coding MGP_AJ_T0021301.1 MGP_AJ_G0016289.1 mouse_genomes_project 1 89569525 89592665 - MGP_AJ_P0021301 Ilkap protein_coding nonsense_mediated_decay MGP_AJ_T0021302.1 MGP_AJ_G0016289.1 mouse_genomes_project 1 89574801 89592679 - Ilkap protein_coding processed_transcript MGP_AJ_T0021303.1 MGP_AJ_G0016289.1 mouse_genomes_project 1 89578386 89592649 - MGP_AJ_P0021303 Ilkap protein_coding nonsense_mediated_decay MGP_AJ_T0021304.1 MGP_AJ_G0016289.1 mouse_genomes_project 1 89579016 89582566 - Ilkap protein_coding retained_intron MGP_AJ_T0021305.1 MGP_AJ_G0016289.1 mouse_genomes_project 1 89579105 89592642 - MGP_AJ_P0021305 Ilkap protein_coding protein_coding MGP_AJ_T0021306.1 MGP_AJ_G0016289.1 mouse_genomes_project 1 89583993 89592658 - Ilkap protein_coding retained_intron MGP_AJ_T0022781.1 MGP_AJ_G0016604.1 mouse_genomes_project 1 154788475 154886274 - MGP_AJ_P0022781 Axdnd1 protein_coding protein_coding MGP_AJ_T0022782.1 MGP_AJ_G0016604.1 mouse_genomes_project 1 154788475 154883466 - MGP_AJ_P0022782 Axdnd1 protein_coding protein_coding MGP_AJ_T0022783.1 MGP_AJ_G0016604.1 mouse_genomes_project 1 154795739 154884584 - MGP_AJ_P0022783 Axdnd1 protein_coding unknown_likely_coding MGP_AJ_T0022784.1 MGP_AJ_G0016604.1 mouse_genomes_project 1 154795739 154883538 - MGP_AJ_P0022784 Axdnd1 protein_coding unknown_likely_coding MGP_AJ_T0022785.1 MGP_AJ_G0016604.1 mouse_genomes_project 1 154821656 154837530 - Axdnd1 protein_coding processed_transcript MGP_AJ_T0022786.1 MGP_AJ_G0016604.1 mouse_genomes_project 1 154826556 154863544 - Axdnd1 protein_coding processed_transcript MGP_AJ_T0022787.1 MGP_AJ_G0016604.1 mouse_genomes_project 1 154827149 154862095 - MGP_AJ_P0022787 Axdnd1 protein_coding protein_coding MGP_AJ_T0022788.1 MGP_AJ_G0016604.1 mouse_genomes_project 1 154863604 154866327 - Axdnd1 protein_coding processed_transcript MGP_AJ_T0022789.1 MGP_AJ_G0016604.1 mouse_genomes_project 1 154883516 154885042 - MGP_AJ_P0022789 Axdnd1 protein_coding protein_coding MGP_AJ_T0022790.1 MGP_AJ_G0016604.1 mouse_genomes_project 1 154883516 154885078 - MGP_AJ_P0022790 Axdnd1 protein_coding protein_coding MGP_AJ_T0005852.1 MGP_AJ_G0004909.1 mouse_genomes_project 1 96411126 96417836 + 1810006J02Rik lincRNA lincRNA MGP_AJ_T0005853.1 MGP_AJ_G0004909.1 mouse_genomes_project 1 96411137 96424296 + 1810006J02Rik lincRNA lincRNA MGP_AJ_T0098504.1 MGP_AJ_G0036488.1 mouse_genomes_project 1 80589690 80589788 + n-R5s213 rRNA rRNA MGP_AJ_T0021539.1 MGP_AJ_G0016345.1 mouse_genomes_project 1 96081758 96126388 - MGP_AJ_P0021539 Pam protein_coding protein_coding MGP_AJ_T0021540.1 MGP_AJ_G0016345.1 mouse_genomes_project 1 96106707 96378677 - MGP_AJ_P0021540 Pam protein_coding protein_coding MGP_AJ_T0021541.1 MGP_AJ_G0016345.1 mouse_genomes_project 1 96106708 96378688 - MGP_AJ_P0021541 Pam protein_coding protein_coding MGP_AJ_T0021542.1 MGP_AJ_G0016345.1 mouse_genomes_project 1 96106713 96258624 - MGP_AJ_P0021542 Pam protein_coding protein_coding MGP_AJ_T0021543.1 MGP_AJ_G0016345.1 mouse_genomes_project 1 96107343 96125966 - MGP_AJ_P0021543 Pam protein_coding protein_coding MGP_AJ_T0021544.1 MGP_AJ_G0016345.1 mouse_genomes_project 1 96107603 96120224 - Pam protein_coding retained_intron MGP_AJ_T0021545.1 MGP_AJ_G0016345.1 mouse_genomes_project 1 96108335 96111562 - Pam protein_coding processed_transcript MGP_AJ_T0021546.1 MGP_AJ_G0016345.1 mouse_genomes_project 1 96111235 96126458 - Pam protein_coding retained_intron MGP_AJ_T0021547.1 MGP_AJ_G0016345.1 mouse_genomes_project 1 96123108 96125968 - Pam protein_coding retained_intron MGP_AJ_T0021548.1 MGP_AJ_G0016345.1 mouse_genomes_project 1 96138504 96150044 - Pam protein_coding retained_intron MGP_AJ_T0021549.1 MGP_AJ_G0016345.1 mouse_genomes_project 1 96140213 96173787 - MGP_AJ_P0021549 Pam protein_coding protein_coding MGP_AJ_T0021550.1 MGP_AJ_G0016345.1 mouse_genomes_project 1 96214957 96258437 - Pam protein_coding retained_intron MGP_AJ_T0021551.1 MGP_AJ_G0016345.1 mouse_genomes_project 1 96238803 96258613 - Pam protein_coding processed_transcript MGP_AJ_T0021552.1 MGP_AJ_G0016345.1 mouse_genomes_project 1 96336604 96340498 - Pam protein_coding retained_intron MGP_AJ_T0021553.1 MGP_AJ_G0016345.1 mouse_genomes_project 1 96340587 96378702 - Pam protein_coding processed_transcript MGP_AJ_T0000602.1 MGP_AJ_G0000543.1 mouse_genomes_project 1 123219472 123222499 - TEC TEC MGP_AJ_T0012327.1 MGP_AJ_G0010422.1 mouse_genomes_project 1 165803120 165803487 - processed_pseudogene processed_pseudogene MGP_AJ_T0023538.1 MGP_AJ_G0016760.1 mouse_genomes_project 1 170778095 170788054 - MGP_AJ_P0023538 Casq1 protein_coding protein_coding MGP_AJ_T0023539.1 MGP_AJ_G0016760.1 mouse_genomes_project 1 170778096 170782164 - Casq1 protein_coding retained_intron MGP_AJ_T0023540.1 MGP_AJ_G0016760.1 mouse_genomes_project 1 170783349 170787901 - MGP_AJ_P0023540 Casq1 protein_coding protein_coding MGP_AJ_T0102160.1 MGP_AJ_G0039903.1 mouse_genomes_project 1 86263564 86264408 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0020031.1 MGP_AJ_G0016046.1 mouse_genomes_project 1 57014835 57052964 - MGP_AJ_P0020031 Mpp4 protein_coding protein_coding MGP_AJ_T0020032.1 MGP_AJ_G0016046.1 mouse_genomes_project 1 57014835 57055932 - MGP_AJ_P0020032 Mpp4 protein_coding protein_coding MGP_AJ_T0020033.1 MGP_AJ_G0016046.1 mouse_genomes_project 1 57014835 57057685 - MGP_AJ_P0020033 Mpp4 protein_coding protein_coding MGP_AJ_T0020034.1 MGP_AJ_G0016046.1 mouse_genomes_project 1 57014836 57055932 - MGP_AJ_P0020034 Mpp4 protein_coding protein_coding MGP_AJ_T0020035.1 MGP_AJ_G0016046.1 mouse_genomes_project 1 57014838 57052957 - MGP_AJ_P0020035 Mpp4 protein_coding unknown_likely_coding MGP_AJ_T0020036.1 MGP_AJ_G0016046.1 mouse_genomes_project 1 57014840 57040975 - Mpp4 protein_coding processed_transcript MGP_AJ_T0020037.1 MGP_AJ_G0016046.1 mouse_genomes_project 1 57015044 57052957 - MGP_AJ_P0020037 Mpp4 protein_coding protein_coding MGP_AJ_T0020038.1 MGP_AJ_G0016046.1 mouse_genomes_project 1 57015153 57055863 - Mpp4 protein_coding retained_intron MGP_AJ_T0020039.1 MGP_AJ_G0016046.1 mouse_genomes_project 1 57034460 57047550 - Mpp4 protein_coding retained_intron MGP_AJ_T0020040.1 MGP_AJ_G0016046.1 mouse_genomes_project 1 57034462 57045837 - Mpp4 protein_coding retained_intron MGP_AJ_T0020041.1 MGP_AJ_G0016046.1 mouse_genomes_project 1 57043300 57055868 - Mpp4 protein_coding retained_intron MGP_AJ_T0022518.1 MGP_AJ_G0016557.1 mouse_genomes_project 1 148761978 148793473 - MGP_AJ_P0022518 BC003331 protein_coding protein_coding MGP_AJ_T0022519.1 MGP_AJ_G0016557.1 mouse_genomes_project 1 148761978 148793180 - MGP_AJ_P0022519 BC003331 protein_coding protein_coding MGP_AJ_T0022520.1 MGP_AJ_G0016557.1 mouse_genomes_project 1 148761978 148793498 - MGP_AJ_P0022520 BC003331 protein_coding protein_coding MGP_AJ_T0022521.1 MGP_AJ_G0016557.1 mouse_genomes_project 1 148763192 148793137 - MGP_AJ_P0022521 BC003331 protein_coding protein_coding MGP_AJ_T0022522.1 MGP_AJ_G0016557.1 mouse_genomes_project 1 148763203 148793161 - MGP_AJ_P0022522 BC003331 protein_coding nonsense_mediated_decay MGP_AJ_T0022523.1 MGP_AJ_G0016557.1 mouse_genomes_project 1 148775260 148782889 - BC003331 protein_coding retained_intron MGP_AJ_T0022524.1 MGP_AJ_G0016557.1 mouse_genomes_project 1 148775988 148793355 - BC003331 protein_coding processed_transcript MGP_AJ_T0022525.1 MGP_AJ_G0016557.1 mouse_genomes_project 1 148784695 148793166 - BC003331 protein_coding retained_intron MGP_AJ_T0022526.1 MGP_AJ_G0016557.1 mouse_genomes_project 1 148788425 148793165 - BC003331 protein_coding retained_intron MGP_AJ_T0017041.1 MGP_AJ_G0015089.1 mouse_genomes_project 1 137454125 137457423 + Gm37423 processed_transcript retained_intron MGP_AJ_T0000398.1 MGP_AJ_G0000341.1 mouse_genomes_project 1 21403490 21403880 + TEC TEC MGP_AJ_T0000399.1 MGP_AJ_G0000341.1 mouse_genomes_project 1 21403492 21403880 + TEC TEC MGP_AJ_T0000605.1 MGP_AJ_G0000546.1 mouse_genomes_project 1 124687736 124688751 - TEC TEC MGP_AJ_T0000639.1 MGP_AJ_G0000579.1 mouse_genomes_project 1 134400263 134402959 - TEC TEC MGP_AJ_T0019596.1 MGP_AJ_G0015967.1 mouse_genomes_project 1 41635647 41651355 + Tpp2 protein_coding processed_transcript MGP_AJ_T0019597.1 MGP_AJ_G0015967.1 mouse_genomes_project 1 41636007 41704536 + MGP_AJ_P0019597 Tpp2 protein_coding protein_coding MGP_AJ_T0019598.1 MGP_AJ_G0015967.1 mouse_genomes_project 1 41636014 41658951 + Tpp2 protein_coding retained_intron MGP_AJ_T0019599.1 MGP_AJ_G0015967.1 mouse_genomes_project 1 41636015 41658951 + Tpp2 protein_coding retained_intron MGP_AJ_T0019600.1 MGP_AJ_G0015967.1 mouse_genomes_project 1 41636015 41704565 + MGP_AJ_P0019600 Tpp2 protein_coding protein_coding MGP_AJ_T0019601.1 MGP_AJ_G0015967.1 mouse_genomes_project 1 41636033 41692573 + MGP_AJ_P0019601 Tpp2 protein_coding nonsense_mediated_decay MGP_AJ_T0019602.1 MGP_AJ_G0015967.1 mouse_genomes_project 1 41636045 41692554 + MGP_AJ_P0019602 Tpp2 protein_coding nonsense_mediated_decay MGP_AJ_T0019603.1 MGP_AJ_G0015967.1 mouse_genomes_project 1 41673302 41679276 + MGP_AJ_P0019603 Tpp2 protein_coding protein_coding MGP_AJ_T0019604.1 MGP_AJ_G0015967.1 mouse_genomes_project 1 41685263 41704565 + MGP_AJ_P0019604 Tpp2 protein_coding protein_coding MGP_AJ_T0019605.1 MGP_AJ_G0015967.1 mouse_genomes_project 1 41702383 41703901 + Tpp2 protein_coding retained_intron MGP_AJ_T0023211.1 MGP_AJ_G0016683.1 mouse_genomes_project 1 164728386 164774322 - MGP_AJ_P0023211 Mael protein_coding protein_coding MGP_AJ_T0023212.1 MGP_AJ_G0016683.1 mouse_genomes_project 1 164728570 164774319 - MGP_AJ_P0023212 Mael protein_coding protein_coding MGP_AJ_T0016984.1 MGP_AJ_G0015068.1 mouse_genomes_project 1 40421226 40427605 - Pantr2 processed_transcript lincRNA MGP_AJ_T0016985.1 MGP_AJ_G0015068.1 mouse_genomes_project 1 40421237 40422218 - Pantr2 processed_transcript TEC MGP_AJ_T0012233.1 MGP_AJ_G0010328.1 mouse_genomes_project 1 126830550 126831150 - processed_pseudogene processed_pseudogene MGP_AJ_T0019336.1 MGP_AJ_G0015914.1 mouse_genomes_project 1 34292484 34295264 + MGP_AJ_P0019336 Cox5b protein_coding protein_coding MGP_AJ_T0019337.1 MGP_AJ_G0015914.1 mouse_genomes_project 1 34292610 34294969 + MGP_AJ_P0019337 Cox5b protein_coding protein_coding MGP_AJ_T0019338.1 MGP_AJ_G0015914.1 mouse_genomes_project 1 34292628 34294133 + Cox5b protein_coding retained_intron MGP_AJ_T0019339.1 MGP_AJ_G0015914.1 mouse_genomes_project 1 34292642 34294090 + Cox5b protein_coding retained_intron MGP_AJ_T0019340.1 MGP_AJ_G0015914.1 mouse_genomes_project 1 34292644 34294968 + Cox5b protein_coding processed_transcript MGP_AJ_T0019341.1 MGP_AJ_G0015914.1 mouse_genomes_project 1 34292688 34294969 + MGP_AJ_P0019341 Cox5b protein_coding protein_coding MGP_AJ_T0009532.1 MGP_AJ_G0007654.1 mouse_genomes_project 1 131370548 131370669 - Gm44300 miRNA miRNA MGP_AJ_T0011254.1 MGP_AJ_G0009376.1 mouse_genomes_project 1 102849973 102850303 + Gm23537 misc_RNA misc_RNA MGP_AJ_T0102137.1 MGP_AJ_G0039881.1 mouse_genomes_project 1 15349340 15356303 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0102138.1 MGP_AJ_G0039882.1 mouse_genomes_project 1 15363166 15373381 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0011938.1 MGP_AJ_G0010033.1 mouse_genomes_project 1 27416432 27417054 + processed_pseudogene processed_pseudogene MGP_AJ_T0000516.1 MGP_AJ_G0000457.1 mouse_genomes_project 1 72275304 72278165 + TEC TEC MGP_AJ_T0021589.1 MGP_AJ_G0016353.1 mouse_genomes_project 1 104349335 104392992 + MGP_AJ_P0021589 Zcchc2 protein_coding protein_coding MGP_AJ_T0021590.1 MGP_AJ_G0016353.1 mouse_genomes_project 1 104349618 104392985 + MGP_AJ_P0021590 Zcchc2 protein_coding protein_coding MGP_AJ_T0021591.1 MGP_AJ_G0016353.1 mouse_genomes_project 1 104363047 104391366 + MGP_AJ_P0021591 Zcchc2 protein_coding protein_coding MGP_AJ_T0021592.1 MGP_AJ_G0016353.1 mouse_genomes_project 1 104363062 104386419 + MGP_AJ_P0021592 Zcchc2 protein_coding protein_coding MGP_AJ_T0021593.1 MGP_AJ_G0016353.1 mouse_genomes_project 1 104370668 104382181 + MGP_AJ_P0021593 Zcchc2 protein_coding nonsense_mediated_decay MGP_AJ_T0102153.1 MGP_AJ_G0039896.1 mouse_genomes_project 1 63314504 63314672 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0019641.1 MGP_AJ_G0015974.1 mouse_genomes_project 1 41914319 41929262 - MGP_AJ_P0019641 Mettl21e protein_coding protein_coding MGP_AJ_T0019642.1 MGP_AJ_G0015974.1 mouse_genomes_project 1 41916664 41929214 - Mettl21e protein_coding retained_intron MGP_AJ_T0000361.1 MGP_AJ_G0000305.1 mouse_genomes_project 1 5723321 5725855 - TEC TEC MGP_AJ_T0012258.1 MGP_AJ_G0010353.1 mouse_genomes_project 1 138539919 138545409 - processed_pseudogene processed_pseudogene MGP_AJ_T0009544.1 MGP_AJ_G0007666.1 mouse_genomes_project 1 158777986 158778095 - Mir1927 miRNA miRNA MGP_AJ_T0002786.1 MGP_AJ_G0002644.1 mouse_genomes_project 1 36047010 36056109 + Gm16152 antisense antisense MGP_AJ_T0002787.1 MGP_AJ_G0002644.1 mouse_genomes_project 1 36050963 36052379 + Gm16152 antisense antisense MGP_AJ_T0099181.1 MGP_AJ_G0037147.1 mouse_genomes_project 1 72178848 72178955 + Gm25524 snRNA snRNA MGP_AJ_T0021895.1 MGP_AJ_G0016421.1 mouse_genomes_project 1 129122729 129149088 - MGP_AJ_P0021895 protein_coding protein_coding MGP_AJ_T0021896.1 MGP_AJ_G0016421.1 mouse_genomes_project 1 129122736 129125793 - protein_coding retained_intron MGP_AJ_T0021897.1 MGP_AJ_G0016421.1 mouse_genomes_project 1 129123825 129163729 - MGP_AJ_P0021897 protein_coding protein_coding MGP_AJ_T0021898.1 MGP_AJ_G0016421.1 mouse_genomes_project 1 129124562 129149089 - MGP_AJ_P0021898 protein_coding protein_coding MGP_AJ_T0021899.1 MGP_AJ_G0016421.1 mouse_genomes_project 1 129124562 129149089 - MGP_AJ_P0021899 protein_coding protein_coding MGP_AJ_T0021900.1 MGP_AJ_G0016421.1 mouse_genomes_project 1 129132210 129149088 - MGP_AJ_P0021900 protein_coding nonsense_mediated_decay MGP_AJ_T0021901.1 MGP_AJ_G0016421.1 mouse_genomes_project 1 129132210 129149088 - MGP_AJ_P0021901 protein_coding protein_coding MGP_AJ_T0021902.1 MGP_AJ_G0016421.1 mouse_genomes_project 1 129132210 129149088 - MGP_AJ_P0021902 protein_coding nonsense_mediated_decay MGP_AJ_T0021903.1 MGP_AJ_G0016421.1 mouse_genomes_project 1 129132398 129150328 - MGP_AJ_P0021903 protein_coding protein_coding MGP_AJ_T0021904.1 MGP_AJ_G0016421.1 mouse_genomes_project 1 129142092 129151751 - MGP_AJ_P0021904 protein_coding nonsense_mediated_decay MGP_AJ_T0099218.1 MGP_AJ_G0037184.1 mouse_genomes_project 1 164340483 164340590 - Gm23402 snRNA snRNA MGP_AJ_T0021123.1 MGP_AJ_G0016249.1 mouse_genomes_project 1 85651448 85666466 + Inpp5d protein_coding retained_intron MGP_AJ_T0021124.1 MGP_AJ_G0016249.1 mouse_genomes_project 1 85651454 85755139 + MGP_AJ_P0021124 Inpp5d protein_coding protein_coding MGP_AJ_T0021125.1 MGP_AJ_G0016249.1 mouse_genomes_project 1 85651481 85677095 + Inpp5d protein_coding processed_transcript MGP_AJ_T0021126.1 MGP_AJ_G0016249.1 mouse_genomes_project 1 85651490 85755139 + MGP_AJ_P0021126 Inpp5d protein_coding nonsense_mediated_decay MGP_AJ_T0021127.1 MGP_AJ_G0016249.1 mouse_genomes_project 1 85651491 85754330 + MGP_AJ_P0021127 Inpp5d protein_coding protein_coding MGP_AJ_T0021128.1 MGP_AJ_G0016249.1 mouse_genomes_project 1 85651581 85755146 + MGP_AJ_P0021128 Inpp5d protein_coding protein_coding MGP_AJ_T0021129.1 MGP_AJ_G0016249.1 mouse_genomes_project 1 85651719 85701039 + MGP_AJ_P0021129 Inpp5d protein_coding protein_coding MGP_AJ_T0021130.1 MGP_AJ_G0016249.1 mouse_genomes_project 1 85652768 85700963 + MGP_AJ_P0021130 Inpp5d protein_coding protein_coding MGP_AJ_T0021131.1 MGP_AJ_G0016249.1 mouse_genomes_project 1 85744013 85746786 + Inpp5d protein_coding processed_transcript MGP_AJ_T0011902.1 MGP_AJ_G0009997.1 mouse_genomes_project 1 15350143 15354164 + processed_pseudogene processed_pseudogene MGP_AJ_T0000476.1 MGP_AJ_G0000417.1 mouse_genomes_project 1 56205760 56208366 - TEC TEC MGP_AJ_T0023272.1 MGP_AJ_G0016700.1 mouse_genomes_project 1 168138536 168179394 + MGP_AJ_P0023272 Rgs5 protein_coding protein_coding MGP_AJ_T0023273.1 MGP_AJ_G0016700.1 mouse_genomes_project 1 168138557 168166818 + MGP_AJ_P0023273 Rgs5 protein_coding protein_coding MGP_AJ_T0021813.1 MGP_AJ_G0016403.1 mouse_genomes_project 1 125827368 126009792 - MGP_AJ_P0021813 Tmem163 protein_coding nonsense_mediated_decay MGP_AJ_T0021814.1 MGP_AJ_G0016403.1 mouse_genomes_project 1 125827380 126009717 - MGP_AJ_P0021814 Tmem163 protein_coding protein_coding MGP_AJ_T0021815.1 MGP_AJ_G0016403.1 mouse_genomes_project 1 125831788 126011229 - MGP_AJ_P0021815 Tmem163 protein_coding protein_coding MGP_AJ_T0021816.1 MGP_AJ_G0016403.1 mouse_genomes_project 1 125832251 125842088 - Tmem163 protein_coding retained_intron MGP_AJ_T0021817.1 MGP_AJ_G0016403.1 mouse_genomes_project 1 125832435 125877534 - Tmem163 protein_coding processed_transcript MGP_AJ_T0020825.1 MGP_AJ_G0016187.1 mouse_genomes_project 1 77381534 77386987 - MGP_AJ_P0020825 Scg2 protein_coding protein_coding MGP_AJ_T0020826.1 MGP_AJ_G0016187.1 mouse_genomes_project 1 77381534 77386909 - MGP_AJ_P0020826 Scg2 protein_coding protein_coding MGP_AJ_T0012050.1 MGP_AJ_G0010145.1 mouse_genomes_project 1 58040984 58041738 + processed_pseudogene processed_pseudogene MGP_AJ_T0020405.1 MGP_AJ_G0016113.1 mouse_genomes_project 1 70182165 70200475 + MGP_AJ_P0020405 Tmem169 protein_coding protein_coding MGP_AJ_T0020406.1 MGP_AJ_G0016113.1 mouse_genomes_project 1 70182191 70198129 + MGP_AJ_P0020406 Tmem169 protein_coding protein_coding MGP_AJ_T0018955.1 MGP_AJ_G0015831.1 mouse_genomes_project 1 13148961 13187798 + MGP_AJ_P0018955 Terf1 protein_coding protein_coding MGP_AJ_T0018956.1 MGP_AJ_G0015831.1 mouse_genomes_project 1 13148972 13165323 + Terf1 protein_coding processed_transcript MGP_AJ_T0018957.1 MGP_AJ_G0015831.1 mouse_genomes_project 1 13148979 13187216 + MGP_AJ_P0018957 Terf1 protein_coding protein_coding MGP_AJ_T0018958.1 MGP_AJ_G0015831.1 mouse_genomes_project 1 13150957 13165411 + Terf1 protein_coding retained_intron MGP_AJ_T0011868.1 MGP_AJ_G0009963.1 mouse_genomes_project 1 4873267 4875363 + processed_pseudogene processed_pseudogene MGP_AJ_T0021451.1 MGP_AJ_G0016324.1 mouse_genomes_project 1 91697043 91717167 + MGP_AJ_P0021451 Sept2 protein_coding protein_coding MGP_AJ_T0021452.1 MGP_AJ_G0016324.1 mouse_genomes_project 1 91697046 91718554 + MGP_AJ_P0021452 Sept2 protein_coding protein_coding MGP_AJ_T0021453.1 MGP_AJ_G0016324.1 mouse_genomes_project 1 91697054 91726797 + MGP_AJ_P0021453 Sept2 protein_coding protein_coding MGP_AJ_T0021454.1 MGP_AJ_G0016324.1 mouse_genomes_project 1 91697074 91715808 + Sept2 protein_coding retained_intron MGP_AJ_T0021455.1 MGP_AJ_G0016324.1 mouse_genomes_project 1 91697088 91715414 + MGP_AJ_P0021455 Sept2 protein_coding protein_coding MGP_AJ_T0021456.1 MGP_AJ_G0016324.1 mouse_genomes_project 1 91697112 91700423 + Sept2 protein_coding retained_intron MGP_AJ_T0021457.1 MGP_AJ_G0016324.1 mouse_genomes_project 1 91697112 91718558 + MGP_AJ_P0021457 Sept2 protein_coding protein_coding MGP_AJ_T0021458.1 MGP_AJ_G0016324.1 mouse_genomes_project 1 91697161 91718583 + MGP_AJ_P0021458 Sept2 protein_coding protein_coding MGP_AJ_T0021459.1 MGP_AJ_G0016324.1 mouse_genomes_project 1 91697273 91717085 + MGP_AJ_P0021459 Sept2 protein_coding protein_coding MGP_AJ_T0021460.1 MGP_AJ_G0016324.1 mouse_genomes_project 1 91697276 91717167 + MGP_AJ_P0021460 Sept2 protein_coding protein_coding MGP_AJ_T0021461.1 MGP_AJ_G0016324.1 mouse_genomes_project 1 91697526 91718581 + MGP_AJ_P0021461 Sept2 protein_coding protein_coding MGP_AJ_T0021462.1 MGP_AJ_G0016324.1 mouse_genomes_project 1 91723241 91725068 + Sept2 protein_coding retained_intron MGP_AJ_T0021463.1 MGP_AJ_G0016324.1 mouse_genomes_project 1 91723616 91725395 + MGP_AJ_P0021463 Sept2 protein_coding protein_coding MGP_AJ_T0017000.1 MGP_AJ_G0015075.1 mouse_genomes_project 1 72836502 72863676 + Gm16582 processed_transcript processed_transcript MGP_AJ_T0100432.1 MGP_AJ_G0038398.1 mouse_genomes_project 1 60925922 60926036 + Gm24942 snoRNA snoRNA MGP_AJ_T0011892.1 MGP_AJ_G0009987.1 mouse_genomes_project 1 13099389 13099936 - processed_pseudogene processed_pseudogene MGP_AJ_T0023234.1 MGP_AJ_G0016690.1 mouse_genomes_project 1 165503124 165599781 + MGP_AJ_P0023234 Fam78b protein_coding protein_coding MGP_AJ_T0023235.1 MGP_AJ_G0016690.1 mouse_genomes_project 1 165503124 165599781 + MGP_AJ_P0023235 Fam78b protein_coding protein_coding MGP_AJ_T0023236.1 MGP_AJ_G0016690.1 mouse_genomes_project 1 165503139 165597556 + MGP_AJ_P0023236 Fam78b protein_coding nonsense_mediated_decay MGP_AJ_T0023237.1 MGP_AJ_G0016690.1 mouse_genomes_project 1 165503173 165589603 + MGP_AJ_P0023237 Fam78b protein_coding protein_coding MGP_AJ_T0023238.1 MGP_AJ_G0016690.1 mouse_genomes_project 1 165503287 165597203 + MGP_AJ_P0023238 Fam78b protein_coding nonsense_mediated_decay MGP_AJ_T0023239.1 MGP_AJ_G0016690.1 mouse_genomes_project 1 165503296 165599488 + MGP_AJ_P0023239 Fam78b protein_coding nonsense_mediated_decay MGP_AJ_T0023388.1 MGP_AJ_G0016730.1 mouse_genomes_project 1 169831776 169842114 + MGP_AJ_P0023388 Adamts4 protein_coding protein_coding MGP_AJ_T0023389.1 MGP_AJ_G0016730.1 mouse_genomes_project 1 169833472 169842114 + MGP_AJ_P0023389 Adamts4 protein_coding protein_coding MGP_AJ_T0000346.1 MGP_AJ_G0000290.1 mouse_genomes_project 1 450055 452874 - TEC TEC MGP_AJ_T0021500.1 MGP_AJ_G0016332.1 mouse_genomes_project 1 92056487 92058036 + MGP_AJ_P0021500 protein_coding protein_coding MGP_AJ_T0021501.1 MGP_AJ_G0016332.1 mouse_genomes_project 1 92056818 92081762 + MGP_AJ_P0021501 protein_coding protein_coding MGP_AJ_T0021502.1 MGP_AJ_G0016332.1 mouse_genomes_project 1 92056852 92081762 + MGP_AJ_P0021502 protein_coding protein_coding MGP_AJ_T0011850.1 MGP_AJ_G0009945.1 mouse_genomes_project 1 1882907 1884090 + processed_pseudogene processed_pseudogene MGP_AJ_T0021466.1 MGP_AJ_G0016326.1 mouse_genomes_project 1 91839731 91858934 - MGP_AJ_P0021466 Stk25 protein_coding protein_coding MGP_AJ_T0021467.1 MGP_AJ_G0016326.1 mouse_genomes_project 1 91841880 91858841 - Stk25 protein_coding retained_intron MGP_AJ_T0021468.1 MGP_AJ_G0016326.1 mouse_genomes_project 1 91842336 91845339 - Stk25 protein_coding retained_intron MGP_AJ_T0021469.1 MGP_AJ_G0016326.1 mouse_genomes_project 1 91843373 91845766 - Stk25 protein_coding retained_intron MGP_AJ_T0021470.1 MGP_AJ_G0016326.1 mouse_genomes_project 1 91845827 91858691 - MGP_AJ_P0021470 Stk25 protein_coding protein_coding MGP_AJ_T0021471.1 MGP_AJ_G0016326.1 mouse_genomes_project 1 91847106 91883229 - MGP_AJ_P0021471 Stk25 protein_coding protein_coding MGP_AJ_T0021629.1 MGP_AJ_G0016365.1 mouse_genomes_project 1 108285907 108299479 + MGP_AJ_P0021629 Cdh7 protein_coding protein_coding MGP_AJ_T0021630.1 MGP_AJ_G0016365.1 mouse_genomes_project 1 108286186 108446916 + MGP_AJ_P0021630 Cdh7 protein_coding protein_coding MGP_AJ_T0021631.1 MGP_AJ_G0016365.1 mouse_genomes_project 1 108286457 108298850 + MGP_AJ_P0021631 Cdh7 protein_coding protein_coding MGP_AJ_T0021632.1 MGP_AJ_G0016365.1 mouse_genomes_project 1 108286482 108297909 + MGP_AJ_P0021632 Cdh7 protein_coding protein_coding MGP_AJ_T0021633.1 MGP_AJ_G0016365.1 mouse_genomes_project 1 108286705 108445966 + MGP_AJ_P0021633 Cdh7 protein_coding nonsense_mediated_decay MGP_AJ_T0021634.1 MGP_AJ_G0016365.1 mouse_genomes_project 1 108286757 108302188 + MGP_AJ_P0021634 Cdh7 protein_coding protein_coding MGP_AJ_T0021635.1 MGP_AJ_G0016365.1 mouse_genomes_project 1 108287213 108445772 + MGP_AJ_P0021635 Cdh7 protein_coding protein_coding MGP_AJ_T0021636.1 MGP_AJ_G0016365.1 mouse_genomes_project 1 108297508 108445960 + MGP_AJ_P0021636 Cdh7 protein_coding protein_coding MGP_AJ_T0021637.1 MGP_AJ_G0016365.1 mouse_genomes_project 1 108405336 108444829 + MGP_AJ_P0021637 Cdh7 protein_coding protein_coding MGP_AJ_T0099170.1 MGP_AJ_G0037136.1 mouse_genomes_project 1 61490590 61490693 - Gm22281 snRNA snRNA MGP_AJ_T0099178.1 MGP_AJ_G0037144.1 mouse_genomes_project 1 70132493 70132684 + Gm23472 snRNA snRNA MGP_AJ_T0098518.1 MGP_AJ_G0036502.1 mouse_genomes_project 1 164297896 164298014 - Gm24808 rRNA rRNA MGP_AJ_T0009538.1 MGP_AJ_G0007660.1 mouse_genomes_project 1 143381306 143381395 - Gm25708 miRNA miRNA MGP_AJ_T0022176.1 MGP_AJ_G0016486.1 mouse_genomes_project 1 132759577 132807756 - MGP_AJ_P0022176 Ppfia4 protein_coding unknown_likely_coding MGP_AJ_T0022177.1 MGP_AJ_G0016486.1 mouse_genomes_project 1 132759577 132790136 - MGP_AJ_P0022177 Ppfia4 protein_coding protein_coding MGP_AJ_T0022178.1 MGP_AJ_G0016486.1 mouse_genomes_project 1 132759578 132767744 - Ppfia4 protein_coding processed_transcript MGP_AJ_T0022179.1 MGP_AJ_G0016486.1 mouse_genomes_project 1 132759582 132767706 - Ppfia4 protein_coding retained_intron MGP_AJ_T0022180.1 MGP_AJ_G0016486.1 mouse_genomes_project 1 132760294 132795788 - MGP_AJ_P0022180 Ppfia4 protein_coding protein_coding MGP_AJ_T0022181.1 MGP_AJ_G0016486.1 mouse_genomes_project 1 132761174 132774504 - Ppfia4 protein_coding retained_intron MGP_AJ_T0000427.1 MGP_AJ_G0000369.1 mouse_genomes_project 1 30101777 30103329 - TEC TEC MGP_AJ_T0018921.1 MGP_AJ_G0015822.1 mouse_genomes_project 1 10451614 10464846 - MGP_AJ_P0018921 Prdm14 protein_coding protein_coding MGP_AJ_T0099205.1 MGP_AJ_G0037171.1 mouse_genomes_project 1 135210993 135211091 + Gm24086 snRNA snRNA MGP_AJ_T0002931.1 MGP_AJ_G0002754.1 mouse_genomes_project 1 160722832 160730747 + Dnm3os antisense antisense MGP_AJ_T0002932.1 MGP_AJ_G0002754.1 mouse_genomes_project 1 160722832 160730745 + Dnm3os antisense antisense MGP_AJ_T0002933.1 MGP_AJ_G0002754.1 mouse_genomes_project 1 160722873 160727310 + Dnm3os antisense antisense MGP_AJ_T0100439.1 MGP_AJ_G0038405.1 mouse_genomes_project 1 77457196 77457322 - Gm24160 snoRNA snoRNA MGP_AJ_T0011959.1 MGP_AJ_G0010054.1 mouse_genomes_project 1 32127236 32127528 - processed_pseudogene processed_pseudogene MGP_AJ_T0000703.1 MGP_AJ_G0000642.1 mouse_genomes_project 1 157809057 157809463 - TEC TEC MGP_AJ_T0099239.1 MGP_AJ_G0037205.1 mouse_genomes_project 1 191593765 191593881 + Gm22265 snRNA snRNA MGP_AJ_T0002914.1 MGP_AJ_G0002739.1 mouse_genomes_project 1 152142808 152145062 - Gm29529 antisense antisense MGP_AJ_T0022054.1 MGP_AJ_G0016458.1 mouse_genomes_project 1 130953464 130967412 - MGP_AJ_P0022054 Cntn2 protein_coding nonsense_mediated_decay MGP_AJ_T0022055.1 MGP_AJ_G0016458.1 mouse_genomes_project 1 130953464 130959672 - MGP_AJ_P0022055 Cntn2 protein_coding nonsense_mediated_decay MGP_AJ_T0022056.1 MGP_AJ_G0016458.1 mouse_genomes_project 1 130955809 130986979 - Cntn2 protein_coding retained_intron MGP_AJ_T0022057.1 MGP_AJ_G0016458.1 mouse_genomes_project 1 130955813 130987028 - MGP_AJ_P0022057 Cntn2 protein_coding protein_coding MGP_AJ_T0022058.1 MGP_AJ_G0016458.1 mouse_genomes_project 1 130955823 130986954 - Cntn2 protein_coding retained_intron MGP_AJ_T0022059.1 MGP_AJ_G0016458.1 mouse_genomes_project 1 130961035 130963124 - Cntn2 protein_coding retained_intron MGP_AJ_T0022060.1 MGP_AJ_G0016458.1 mouse_genomes_project 1 130972901 130977787 - MGP_AJ_P0022060 Cntn2 protein_coding protein_coding MGP_AJ_T0022061.1 MGP_AJ_G0016458.1 mouse_genomes_project 1 130977559 130987345 - MGP_AJ_P0022061 Cntn2 protein_coding protein_coding MGP_AJ_T0005946.1 MGP_AJ_G0004984.1 mouse_genomes_project 1 152498715 152589491 - A830008E24Rik lincRNA lincRNA MGP_AJ_T0005947.1 MGP_AJ_G0004984.1 mouse_genomes_project 1 152509209 152591289 - A830008E24Rik lincRNA lincRNA MGP_AJ_T0000653.1 MGP_AJ_G0000592.1 mouse_genomes_project 1 136773239 136773660 + TEC TEC MGP_AJ_T0018706.1 MGP_AJ_G0015788.1 mouse_genomes_project 1 629414 632675 + MGP_AJ_P0018706 protein_coding protein_coding MGP_AJ_T0011874.1 MGP_AJ_G0009969.1 mouse_genomes_project 1 6698785 6700700 - processed_pseudogene processed_pseudogene MGP_AJ_T0000417.1 MGP_AJ_G0000359.1 mouse_genomes_project 1 23205136 23208447 - TEC TEC MGP_AJ_T0005831.1 MGP_AJ_G0004889.1 mouse_genomes_project 1 88456030 88460876 - Gm28721 lincRNA lincRNA MGP_AJ_T0022322.1 MGP_AJ_G0016514.1 mouse_genomes_project 1 134375288 134422931 - MGP_AJ_P0022322 Pkp1 protein_coding protein_coding MGP_AJ_T0022323.1 MGP_AJ_G0016514.1 mouse_genomes_project 1 134376843 134422844 - MGP_AJ_P0022323 Pkp1 protein_coding protein_coding MGP_AJ_T0022324.1 MGP_AJ_G0016514.1 mouse_genomes_project 1 134377259 134422866 - MGP_AJ_P0022324 Pkp1 protein_coding nonsense_mediated_decay MGP_AJ_T0022325.1 MGP_AJ_G0016514.1 mouse_genomes_project 1 134381211 134382169 - Pkp1 protein_coding retained_intron MGP_AJ_T0098860.1 MGP_AJ_G0036844.1 mouse_genomes_project 1 745102 756674 - Gm19938 sense_intronic sense_intronic MGP_AJ_T0019503.1 MGP_AJ_G0015946.1 mouse_genomes_project 1 37477328 37478504 - MGP_AJ_P0019503 Gm3646 protein_coding protein_coding MGP_AJ_T0019196.1 MGP_AJ_G0015890.1 mouse_genomes_project 1 31513545 31910133 + MGP_AJ_P0019196 Dst protein_coding protein_coding MGP_AJ_T0019197.1 MGP_AJ_G0015890.1 mouse_genomes_project 1 31609882 31777549 + MGP_AJ_P0019197 Dst protein_coding protein_coding MGP_AJ_T0019198.1 MGP_AJ_G0015890.1 mouse_genomes_project 1 31609884 31739961 + MGP_AJ_P0019198 Dst protein_coding protein_coding MGP_AJ_T0019199.1 MGP_AJ_G0015890.1 mouse_genomes_project 1 31610128 31739962 + MGP_AJ_P0019199 Dst protein_coding protein_coding MGP_AJ_T0019200.1 MGP_AJ_G0015890.1 mouse_genomes_project 1 31610182 31767485 + Dst protein_coding retained_intron MGP_AJ_T0019201.1 MGP_AJ_G0015890.1 mouse_genomes_project 1 31615813 31911957 + MGP_AJ_P0019201 Dst protein_coding protein_coding MGP_AJ_T0019202.1 MGP_AJ_G0015890.1 mouse_genomes_project 1 31615825 31911955 + MGP_AJ_P0019202 Dst protein_coding protein_coding MGP_AJ_T0019203.1 MGP_AJ_G0015890.1 mouse_genomes_project 1 31615825 31911966 + MGP_AJ_P0019203 Dst protein_coding protein_coding MGP_AJ_T0019204.1 MGP_AJ_G0015890.1 mouse_genomes_project 1 31690530 31721156 + Dst protein_coding retained_intron MGP_AJ_T0019205.1 MGP_AJ_G0015890.1 mouse_genomes_project 1 31724266 31756874 + Dst protein_coding processed_transcript MGP_AJ_T0019206.1 MGP_AJ_G0015890.1 mouse_genomes_project 1 31724329 31836728 + MGP_AJ_P0019206 Dst protein_coding unknown_likely_coding MGP_AJ_T0019207.1 MGP_AJ_G0015890.1 mouse_genomes_project 1 31763103 31910929 + MGP_AJ_P0019207 Dst protein_coding protein_coding MGP_AJ_T0019208.1 MGP_AJ_G0015890.1 mouse_genomes_project 1 31763103 31786657 + MGP_AJ_P0019208 Dst protein_coding protein_coding MGP_AJ_T0019209.1 MGP_AJ_G0015890.1 mouse_genomes_project 1 31763103 31796016 + MGP_AJ_P0019209 Dst protein_coding protein_coding MGP_AJ_T0019210.1 MGP_AJ_G0015890.1 mouse_genomes_project 1 31764691 31768186 + Dst protein_coding retained_intron MGP_AJ_T0019211.1 MGP_AJ_G0015890.1 mouse_genomes_project 1 31781661 31786001 + Dst protein_coding retained_intron MGP_AJ_T0019212.1 MGP_AJ_G0015890.1 mouse_genomes_project 1 31840085 31910133 + MGP_AJ_P0019212 Dst protein_coding unknown_likely_coding MGP_AJ_T0019213.1 MGP_AJ_G0015890.1 mouse_genomes_project 1 31860299 31910929 + MGP_AJ_P0019213 Dst protein_coding protein_coding MGP_AJ_T0019214.1 MGP_AJ_G0015890.1 mouse_genomes_project 1 31873067 31874790 + Dst protein_coding retained_intron MGP_AJ_T0019215.1 MGP_AJ_G0015890.1 mouse_genomes_project 1 31895990 31906004 + MGP_AJ_P0019215 Dst protein_coding protein_coding MGP_AJ_T0019216.1 MGP_AJ_G0015890.1 mouse_genomes_project 1 31896981 31909192 + MGP_AJ_P0019216 Dst protein_coding protein_coding MGP_AJ_T0009492.1 MGP_AJ_G0007614.1 mouse_genomes_project 1 58540808 58540914 - Gm23762 miRNA miRNA MGP_AJ_T0012117.1 MGP_AJ_G0010212.1 mouse_genomes_project 1 79509085 79514009 - processed_pseudogene processed_pseudogene MGP_AJ_T0019476.1 MGP_AJ_G0015937.1 mouse_genomes_project 1 36603221 36614321 + MGP_AJ_P0019476 Nms protein_coding protein_coding MGP_AJ_T0019477.1 MGP_AJ_G0015937.1 mouse_genomes_project 1 36603275 36612688 + MGP_AJ_P0019477 Nms protein_coding protein_coding MGP_AJ_T0023304.1 MGP_AJ_G0016711.1 mouse_genomes_project 1 168826999 168830309 + MGP_AJ_P0023304 1700015E13Rik protein_coding protein_coding MGP_AJ_T0005764.1 MGP_AJ_G0004838.1 mouse_genomes_project 1 62513090 62521340 + Gm28982 lincRNA lincRNA MGP_AJ_T0012263.1 MGP_AJ_G0010358.1 mouse_genomes_project 1 141597964 141603059 - processed_pseudogene processed_pseudogene MGP_AJ_T0099155.1 MGP_AJ_G0037121.1 mouse_genomes_project 1 29752640 29752747 - Gm25814 snRNA snRNA MGP_AJ_T0099176.1 MGP_AJ_G0037142.1 mouse_genomes_project 1 68482763 68482870 + Gm23422 snRNA snRNA MGP_AJ_T0000467.1 MGP_AJ_G0000408.1 mouse_genomes_project 1 51594135 51595592 + TEC TEC MGP_AJ_T0024155.1 MGP_AJ_G0016912.1 mouse_genomes_project 1 189828107 189849944 + MGP_AJ_P0024155 Angel2 protein_coding protein_coding MGP_AJ_T0024156.1 MGP_AJ_G0016912.1 mouse_genomes_project 1 189831487 189841427 + Angel2 protein_coding retained_intron MGP_AJ_T0024157.1 MGP_AJ_G0016912.1 mouse_genomes_project 1 189831487 189849944 + MGP_AJ_P0024157 Angel2 protein_coding protein_coding MGP_AJ_T0024158.1 MGP_AJ_G0016912.1 mouse_genomes_project 1 189831487 189849944 + MGP_AJ_P0024158 Angel2 protein_coding nonsense_mediated_decay MGP_AJ_T0024159.1 MGP_AJ_G0016912.1 mouse_genomes_project 1 189831487 189849944 + MGP_AJ_P0024159 Angel2 protein_coding protein_coding MGP_AJ_T0024160.1 MGP_AJ_G0016912.1 mouse_genomes_project 1 189831818 189840694 + MGP_AJ_P0024160 Angel2 protein_coding protein_coding MGP_AJ_T0024161.1 MGP_AJ_G0016912.1 mouse_genomes_project 1 189831841 189849944 + Angel2 protein_coding processed_transcript MGP_AJ_T0024162.1 MGP_AJ_G0016912.1 mouse_genomes_project 1 189831846 189840469 + MGP_AJ_P0024162 Angel2 protein_coding nonsense_mediated_decay MGP_AJ_T0024163.1 MGP_AJ_G0016912.1 mouse_genomes_project 1 189831848 189840997 + Angel2 protein_coding retained_intron MGP_AJ_T0024164.1 MGP_AJ_G0016912.1 mouse_genomes_project 1 189840243 189842261 + Angel2 protein_coding retained_intron MGP_AJ_T0012262.1 MGP_AJ_G0010357.1 mouse_genomes_project 1 141209534 141212509 + processed_pseudogene processed_pseudogene MGP_AJ_T0012272.1 MGP_AJ_G0010367.1 mouse_genomes_project 1 146841499 146841842 + processed_pseudogene processed_pseudogene MGP_AJ_T0012277.1 MGP_AJ_G0010372.1 mouse_genomes_project 1 147388521 147390558 + processed_pseudogene processed_pseudogene MGP_AJ_T0012301.1 MGP_AJ_G0010396.1 mouse_genomes_project 1 156082748 156083353 - processed_pseudogene processed_pseudogene MGP_AJ_T0012027.1 MGP_AJ_G0010122.1 mouse_genomes_project 1 50287815 50288278 + processed_pseudogene processed_pseudogene MGP_AJ_T0022187.1 MGP_AJ_G0016488.1 mouse_genomes_project 1 132849822 132854864 + MGP_AJ_P0022187 4933406M09Rik protein_coding protein_coding MGP_AJ_T0000440.1 MGP_AJ_G0000381.1 mouse_genomes_project 1 32420225 32423258 + TEC TEC MGP_AJ_T0023063.1 MGP_AJ_G0016651.1 mouse_genomes_project 1 161756979 161824083 - MGP_AJ_P0023063 Prrx1 protein_coding protein_coding MGP_AJ_T0023064.1 MGP_AJ_G0016651.1 mouse_genomes_project 1 161756979 161824045 - MGP_AJ_P0023064 Prrx1 protein_coding protein_coding MGP_AJ_T0023065.1 MGP_AJ_G0016651.1 mouse_genomes_project 1 161759441 161800266 - Prrx1 protein_coding processed_transcript MGP_AJ_T0023066.1 MGP_AJ_G0016651.1 mouse_genomes_project 1 161764712 161824041 - MGP_AJ_P0023066 Prrx1 protein_coding protein_coding MGP_AJ_T0023067.1 MGP_AJ_G0016651.1 mouse_genomes_project 1 161793512 161824044 - Prrx1 protein_coding retained_intron MGP_AJ_T0011899.1 MGP_AJ_G0009994.1 mouse_genomes_project 1 14735292 14735764 + processed_pseudogene processed_pseudogene MGP_AJ_T0000356.1 MGP_AJ_G0000300.1 mouse_genomes_project 1 2057520 2059635 - TEC TEC MGP_AJ_T0023694.1 MGP_AJ_G0016820.1 mouse_genomes_project 1 174651293 174683272 + MGP_AJ_P0023694 Exo1 protein_coding protein_coding MGP_AJ_T0023695.1 MGP_AJ_G0016820.1 mouse_genomes_project 1 174651506 174658304 + MGP_AJ_P0023695 Exo1 protein_coding protein_coding MGP_AJ_T0023696.1 MGP_AJ_G0016820.1 mouse_genomes_project 1 174651508 174661918 + MGP_AJ_P0023696 Exo1 protein_coding protein_coding MGP_AJ_T0023697.1 MGP_AJ_G0016820.1 mouse_genomes_project 1 174651525 174661940 + MGP_AJ_P0023697 Exo1 protein_coding protein_coding MGP_AJ_T0023698.1 MGP_AJ_G0016820.1 mouse_genomes_project 1 174651891 174661936 + MGP_AJ_P0023698 Exo1 protein_coding protein_coding MGP_AJ_T0023699.1 MGP_AJ_G0016820.1 mouse_genomes_project 1 174662738 174670773 + MGP_AJ_P0023699 Exo1 protein_coding protein_coding MGP_AJ_T0023700.1 MGP_AJ_G0016820.1 mouse_genomes_project 1 174671223 174678515 + MGP_AJ_P0023700 Exo1 protein_coding protein_coding MGP_AJ_T0023701.1 MGP_AJ_G0016820.1 mouse_genomes_project 1 174674050 174678332 + Exo1 protein_coding retained_intron MGP_AJ_T0023702.1 MGP_AJ_G0016820.1 mouse_genomes_project 1 174674188 174676011 + MGP_AJ_P0023702 Exo1 protein_coding protein_coding MGP_AJ_T0023703.1 MGP_AJ_G0016820.1 mouse_genomes_project 1 174677383 174678527 + Exo1 protein_coding processed_transcript MGP_AJ_T0021268.1 MGP_AJ_G0016284.1 mouse_genomes_project 1 89442608 89468209 + Ube2f protein_coding retained_intron MGP_AJ_T0021269.1 MGP_AJ_G0016284.1 mouse_genomes_project 1 89442615 89478472 + MGP_AJ_P0021269 Ube2f protein_coding protein_coding MGP_AJ_T0021270.1 MGP_AJ_G0016284.1 mouse_genomes_project 1 89442623 89478757 + MGP_AJ_P0021270 Ube2f protein_coding protein_coding MGP_AJ_T0021271.1 MGP_AJ_G0016284.1 mouse_genomes_project 1 89442641 89483100 + MGP_AJ_P0021271 Ube2f protein_coding protein_coding MGP_AJ_T0021272.1 MGP_AJ_G0016284.1 mouse_genomes_project 1 89442669 89478505 + MGP_AJ_P0021272 Ube2f protein_coding protein_coding MGP_AJ_T0021273.1 MGP_AJ_G0016284.1 mouse_genomes_project 1 89442870 89478659 + MGP_AJ_P0021273 Ube2f protein_coding protein_coding MGP_AJ_T0021274.1 MGP_AJ_G0016284.1 mouse_genomes_project 1 89442960 89458136 + MGP_AJ_P0021274 Ube2f protein_coding protein_coding MGP_AJ_T0021275.1 MGP_AJ_G0016284.1 mouse_genomes_project 1 89457485 89469174 + Ube2f protein_coding retained_intron MGP_AJ_T0021276.1 MGP_AJ_G0016284.1 mouse_genomes_project 1 89467678 89469282 + Ube2f protein_coding retained_intron MGP_AJ_T0021277.1 MGP_AJ_G0016284.1 mouse_genomes_project 1 89468840 89478123 + Ube2f protein_coding retained_intron MGP_AJ_T0021278.1 MGP_AJ_G0016284.1 mouse_genomes_project 1 89476378 89477748 + Ube2f protein_coding retained_intron MGP_AJ_T0012150.1 MGP_AJ_G0010245.1 mouse_genomes_project 1 95275238 95276202 - processed_pseudogene processed_pseudogene MGP_AJ_T0020343.1 MGP_AJ_G0016102.1 mouse_genomes_project 1 65011236 65121384 + MGP_AJ_P0020343 Cps1 protein_coding protein_coding MGP_AJ_T0011898.1 MGP_AJ_G0009993.1 mouse_genomes_project 1 14597571 14597950 - processed_pseudogene processed_pseudogene MGP_AJ_T0012006.1 MGP_AJ_G0010101.1 mouse_genomes_project 1 45260921 45262252 + processed_pseudogene processed_pseudogene MGP_AJ_T0022853.1 MGP_AJ_G0016615.1 mouse_genomes_project 1 156717268 156822510 - MGP_AJ_P0022853 Brinp2 protein_coding nonsense_mediated_decay MGP_AJ_T0022854.1 MGP_AJ_G0016615.1 mouse_genomes_project 1 156717268 156822607 - MGP_AJ_P0022854 Brinp2 protein_coding protein_coding MGP_AJ_T0022855.1 MGP_AJ_G0016615.1 mouse_genomes_project 1 156768766 156769527 - Brinp2 protein_coding processed_transcript MGP_AJ_T0022856.1 MGP_AJ_G0016615.1 mouse_genomes_project 1 156818561 156822576 - Brinp2 protein_coding retained_intron MGP_AJ_T0012218.1 MGP_AJ_G0010313.1 mouse_genomes_project 1 119889235 119889700 + processed_pseudogene processed_pseudogene MGP_AJ_T0022616.1 MGP_AJ_G0016573.1 mouse_genomes_project 1 151226612 151264021 + MGP_AJ_P0022616 Ncf2 protein_coding protein_coding MGP_AJ_T0022617.1 MGP_AJ_G0016573.1 mouse_genomes_project 1 151234350 151250698 + MGP_AJ_P0022617 Ncf2 protein_coding protein_coding MGP_AJ_T0022618.1 MGP_AJ_G0016573.1 mouse_genomes_project 1 151234403 151264020 + MGP_AJ_P0022618 Ncf2 protein_coding protein_coding MGP_AJ_T0022619.1 MGP_AJ_G0016573.1 mouse_genomes_project 1 151234491 151238972 + Ncf2 protein_coding retained_intron MGP_AJ_T0022620.1 MGP_AJ_G0016573.1 mouse_genomes_project 1 151237235 151250697 + Ncf2 protein_coding retained_intron MGP_AJ_T0022621.1 MGP_AJ_G0016573.1 mouse_genomes_project 1 151249974 151250890 + Ncf2 protein_coding retained_intron MGP_AJ_T0005956.1 MGP_AJ_G0004991.1 mouse_genomes_project 1 157429724 157442460 - 1600012P17Rik lincRNA lincRNA MGP_AJ_T0005957.1 MGP_AJ_G0004991.1 mouse_genomes_project 1 157431631 157442068 - 1600012P17Rik lincRNA lincRNA MGP_AJ_T0000433.1 MGP_AJ_G0000374.1 mouse_genomes_project 1 31269772 31272086 - TEC TEC MGP_AJ_T0099231.1 MGP_AJ_G0037197.1 mouse_genomes_project 1 177252408 177252514 + Gm24919 snRNA snRNA MGP_AJ_T0012191.1 MGP_AJ_G0010286.1 mouse_genomes_project 1 110346809 110347372 - processed_pseudogene processed_pseudogene MGP_AJ_T0022803.1 MGP_AJ_G0016607.1 mouse_genomes_project 1 155128046 155147997 - MGP_AJ_P0022803 protein_coding nonsense_mediated_decay MGP_AJ_T0022804.1 MGP_AJ_G0016607.1 mouse_genomes_project 1 155128046 155147966 - MGP_AJ_P0022804 protein_coding nonsense_mediated_decay MGP_AJ_T0022805.1 MGP_AJ_G0016607.1 mouse_genomes_project 1 155128046 155147997 - MGP_AJ_P0022805 protein_coding protein_coding MGP_AJ_T0022806.1 MGP_AJ_G0016607.1 mouse_genomes_project 1 155129470 155147955 - MGP_AJ_P0022806 protein_coding protein_coding MGP_AJ_T0022807.1 MGP_AJ_G0016607.1 mouse_genomes_project 1 155130099 155132840 - protein_coding processed_transcript MGP_AJ_T0022808.1 MGP_AJ_G0016607.1 mouse_genomes_project 1 155140367 155147976 - MGP_AJ_P0022808 protein_coding protein_coding MGP_AJ_T0019009.1 MGP_AJ_G0015840.1 mouse_genomes_project 1 14024185 14028108 + Ly96 protein_coding retained_intron MGP_AJ_T0019010.1 MGP_AJ_G0015840.1 mouse_genomes_project 1 14024569 14045642 + MGP_AJ_P0019010 Ly96 protein_coding protein_coding MGP_AJ_T0019011.1 MGP_AJ_G0015840.1 mouse_genomes_project 1 14024644 14045568 + MGP_AJ_P0019011 Ly96 protein_coding protein_coding MGP_AJ_T0000794.1 MGP_AJ_G0000731.1 mouse_genomes_project 1 190995761 190995894 + TEC TEC MGP_AJ_T0023907.1 MGP_AJ_G0016862.1 mouse_genomes_project 1 180057785 180078498 + MGP_AJ_P0023907 Cnih4 protein_coding protein_coding MGP_AJ_T0023908.1 MGP_AJ_G0016862.1 mouse_genomes_project 1 180057847 180078498 + MGP_AJ_P0023908 Cnih4 protein_coding protein_coding MGP_AJ_T0023909.1 MGP_AJ_G0016862.1 mouse_genomes_project 1 180062782 180075885 + Cnih4 protein_coding processed_transcript MGP_AJ_T0023910.1 MGP_AJ_G0016862.1 mouse_genomes_project 1 180063765 180075853 + Cnih4 protein_coding retained_intron MGP_AJ_T0020451.1 MGP_AJ_G0016126.1 mouse_genomes_project 1 72202005 72202814 + MGP_AJ_P0020451 Arpc2 protein_coding protein_coding MGP_AJ_T0020452.1 MGP_AJ_G0016126.1 mouse_genomes_project 1 72202422 72235267 + MGP_AJ_P0020452 Arpc2 protein_coding protein_coding MGP_AJ_T0020453.1 MGP_AJ_G0016126.1 mouse_genomes_project 1 72202442 72235049 + MGP_AJ_P0020453 Arpc2 protein_coding protein_coding MGP_AJ_T0020454.1 MGP_AJ_G0016126.1 mouse_genomes_project 1 72202475 72235050 + MGP_AJ_P0020454 Arpc2 protein_coding protein_coding MGP_AJ_T0005965.1 MGP_AJ_G0004997.1 mouse_genomes_project 1 160394153 160404558 + Gm31925 lincRNA lincRNA MGP_AJ_T0005966.1 MGP_AJ_G0004997.1 mouse_genomes_project 1 160395752 160406784 + Gm31925 lincRNA lincRNA MGP_AJ_T0021511.1 MGP_AJ_G0016337.1 mouse_genomes_project 1 92301435 92315772 - MGP_AJ_P0021511 Pdcd1 protein_coding protein_coding MGP_AJ_T0005808.1 MGP_AJ_G0004869.1 mouse_genomes_project 1 78173999 78177754 + 2310015K22Rik lincRNA lincRNA MGP_AJ_T0022365.1 MGP_AJ_G0016524.1 mouse_genomes_project 1 134923415 134925937 + Ddx59 protein_coding retained_intron MGP_AJ_T0022366.1 MGP_AJ_G0016524.1 mouse_genomes_project 1 134923415 134948695 + MGP_AJ_P0022366 Ddx59 protein_coding protein_coding MGP_AJ_T0022367.1 MGP_AJ_G0016524.1 mouse_genomes_project 1 134938719 134940962 + Ddx59 protein_coding processed_transcript MGP_AJ_T0022368.1 MGP_AJ_G0016524.1 mouse_genomes_project 1 134940938 134942603 + Ddx59 protein_coding retained_intron MGP_AJ_T0000745.1 MGP_AJ_G0000684.1 mouse_genomes_project 1 175151356 175154909 - TEC TEC MGP_AJ_T0022248.1 MGP_AJ_G0016501.1 mouse_genomes_project 1 133653664 133661142 - MGP_AJ_P0022248 Gpr37l1 protein_coding protein_coding MGP_AJ_T0000351.1 MGP_AJ_G0000295.1 mouse_genomes_project 1 777883 779517 + TEC TEC MGP_AJ_T0021752.1 MGP_AJ_G0016392.1 mouse_genomes_project 1 119670974 119694436 - MGP_AJ_P0021752 Insig2 protein_coding protein_coding MGP_AJ_T0021753.1 MGP_AJ_G0016392.1 mouse_genomes_project 1 119672526 119673950 - Insig2 protein_coding retained_intron MGP_AJ_T0021754.1 MGP_AJ_G0016392.1 mouse_genomes_project 1 119672557 119694415 - MGP_AJ_P0021754 Insig2 protein_coding protein_coding MGP_AJ_T0021755.1 MGP_AJ_G0016392.1 mouse_genomes_project 1 119673511 119678972 - Insig2 protein_coding retained_intron MGP_AJ_T0021756.1 MGP_AJ_G0016392.1 mouse_genomes_project 1 119673568 119694387 - MGP_AJ_P0021756 Insig2 protein_coding protein_coding MGP_AJ_T0021757.1 MGP_AJ_G0016392.1 mouse_genomes_project 1 119673868 119689791 - MGP_AJ_P0021757 Insig2 protein_coding protein_coding MGP_AJ_T0021758.1 MGP_AJ_G0016392.1 mouse_genomes_project 1 119678403 119686328 - Insig2 protein_coding retained_intron MGP_AJ_T0021759.1 MGP_AJ_G0016392.1 mouse_genomes_project 1 119686263 119694304 - MGP_AJ_P0021759 Insig2 protein_coding protein_coding MGP_AJ_T0021760.1 MGP_AJ_G0016392.1 mouse_genomes_project 1 119686333 119694310 - MGP_AJ_P0021760 Insig2 protein_coding protein_coding MGP_AJ_T0021761.1 MGP_AJ_G0016392.1 mouse_genomes_project 1 119686360 119699185 - MGP_AJ_P0021761 Insig2 protein_coding protein_coding MGP_AJ_T0012246.1 MGP_AJ_G0010341.1 mouse_genomes_project 1 135032982 135033874 + processed_pseudogene processed_pseudogene MGP_AJ_T0019155.1 MGP_AJ_G0015881.1 mouse_genomes_project 1 28700771 28730828 + MGP_AJ_P0019155 Lgsn protein_coding protein_coding MGP_AJ_T0019156.1 MGP_AJ_G0015881.1 mouse_genomes_project 1 28714877 28730828 + MGP_AJ_P0019156 Lgsn protein_coding protein_coding MGP_AJ_T0011950.1 MGP_AJ_G0010045.1 mouse_genomes_project 1 30683308 30684059 - processed_pseudogene processed_pseudogene MGP_AJ_T0100482.1 MGP_AJ_G0038448.1 mouse_genomes_project 1 159521039 159521120 + Snord80 snoRNA snoRNA MGP_AJ_T0012204.1 MGP_AJ_G0010299.1 mouse_genomes_project 1 116589389 116590552 + processed_pseudogene processed_pseudogene MGP_AJ_T0012123.1 MGP_AJ_G0010218.1 mouse_genomes_project 1 80981385 80982015 + processed_pseudogene processed_pseudogene MGP_AJ_T0000586.1 MGP_AJ_G0000527.1 mouse_genomes_project 1 118001979 118002905 - TEC TEC MGP_AJ_T0000795.1 MGP_AJ_G0000732.1 mouse_genomes_project 1 191684971 191687068 - TEC TEC MGP_AJ_T0000796.1 MGP_AJ_G0000732.1 mouse_genomes_project 1 191685022 191686573 - TEC TEC MGP_AJ_T0002802.1 MGP_AJ_G0002657.1 mouse_genomes_project 1 50956202 50957785 + Gm28777 antisense antisense MGP_AJ_T0000559.1 MGP_AJ_G0000500.1 mouse_genomes_project 1 88428072 88429423 - TEC TEC MGP_AJ_T0002942.1 MGP_AJ_G0002762.1 mouse_genomes_project 1 164908353 164909008 - Gm15853 antisense antisense MGP_AJ_T0102200.1 MGP_AJ_G0039943.1 mouse_genomes_project 1 172857811 172862789 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0099163.1 MGP_AJ_G0037129.1 mouse_genomes_project 1 46215616 46215737 - Gm23240 snRNA snRNA MGP_AJ_T0005985.1 MGP_AJ_G0005013.1 mouse_genomes_project 1 164906392 164908433 - Gm15853 lincRNA lincRNA MGP_AJ_T0012156.1 MGP_AJ_G0010251.1 mouse_genomes_project 1 98699861 98700176 - processed_pseudogene processed_pseudogene MGP_AJ_T0005723.1 MGP_AJ_G0004807.1 mouse_genomes_project 1 48686838 48688252 + Gm28322 lincRNA lincRNA MGP_AJ_T0022648.1 MGP_AJ_G0016579.1 mouse_genomes_project 1 151901693 151933544 - MGP_AJ_P0022648 Dhx9 protein_coding protein_coding MGP_AJ_T0022649.1 MGP_AJ_G0016579.1 mouse_genomes_project 1 151901693 151933596 - MGP_AJ_P0022649 Dhx9 protein_coding protein_coding MGP_AJ_T0022650.1 MGP_AJ_G0016579.1 mouse_genomes_project 1 151908568 151933581 - MGP_AJ_P0022650 Dhx9 protein_coding nonsense_mediated_decay MGP_AJ_T0022651.1 MGP_AJ_G0016579.1 mouse_genomes_project 1 151908574 151924075 - MGP_AJ_P0022651 Dhx9 protein_coding nonsense_mediated_decay MGP_AJ_T0022652.1 MGP_AJ_G0016579.1 mouse_genomes_project 1 151910277 151933587 - MGP_AJ_P0022652 Dhx9 protein_coding protein_coding MGP_AJ_T0022653.1 MGP_AJ_G0016579.1 mouse_genomes_project 1 151918130 151924089 - Dhx9 protein_coding retained_intron MGP_AJ_T0022654.1 MGP_AJ_G0016579.1 mouse_genomes_project 1 151922774 151933594 - Dhx9 protein_coding retained_intron MGP_AJ_T0022655.1 MGP_AJ_G0016579.1 mouse_genomes_project 1 151924212 151926486 - Dhx9 protein_coding retained_intron MGP_AJ_T0022656.1 MGP_AJ_G0016579.1 mouse_genomes_project 1 151928306 151933570 - Dhx9 protein_coding retained_intron MGP_AJ_T0021905.1 MGP_AJ_G0016422.1 mouse_genomes_project 1 129151839 129158842 + MGP_AJ_P0021905 Yod1 protein_coding protein_coding MGP_AJ_T0012334.1 MGP_AJ_G0010429.1 mouse_genomes_project 1 170251447 170251975 - processed_pseudogene processed_pseudogene MGP_AJ_T0021143.1 MGP_AJ_G0016251.1 mouse_genomes_project 1 85832458 85859251 + Sag protein_coding retained_intron MGP_AJ_T0021144.1 MGP_AJ_G0016251.1 mouse_genomes_project 1 85832458 85871115 + Sag protein_coding retained_intron MGP_AJ_T0021145.1 MGP_AJ_G0016251.1 mouse_genomes_project 1 85832458 85871601 + Sag protein_coding retained_intron MGP_AJ_T0021146.1 MGP_AJ_G0016251.1 mouse_genomes_project 1 85832458 85847467 + Sag protein_coding retained_intron MGP_AJ_T0021147.1 MGP_AJ_G0016251.1 mouse_genomes_project 1 85832458 85881579 + MGP_AJ_P0021147 Sag protein_coding protein_coding MGP_AJ_T0021148.1 MGP_AJ_G0016251.1 mouse_genomes_project 1 85832458 85881714 + MGP_AJ_P0021148 Sag protein_coding protein_coding MGP_AJ_T0021149.1 MGP_AJ_G0016251.1 mouse_genomes_project 1 85841767 85858610 + Sag protein_coding processed_transcript MGP_AJ_T0021150.1 MGP_AJ_G0016251.1 mouse_genomes_project 1 85851067 85858620 + Sag protein_coding processed_transcript MGP_AJ_T0021151.1 MGP_AJ_G0016251.1 mouse_genomes_project 1 85860440 85871619 + Sag protein_coding retained_intron MGP_AJ_T0011869.1 MGP_AJ_G0009964.1 mouse_genomes_project 1 4955535 4956414 + processed_pseudogene processed_pseudogene MGP_AJ_T0012257.1 MGP_AJ_G0010352.1 mouse_genomes_project 1 138499488 138499909 + processed_pseudogene processed_pseudogene MGP_AJ_T0023645.1 MGP_AJ_G0016800.1 mouse_genomes_project 1 172810506 172811460 + MGP_AJ_P0023645 Olfr430 protein_coding protein_coding MGP_AJ_T0019065.1 MGP_AJ_G0015859.1 mouse_genomes_project 1 18763357 18766899 + MGP_AJ_P0019065 protein_coding protein_coding MGP_AJ_T0100490.1 MGP_AJ_G0038456.1 mouse_genomes_project 1 169888397 169888488 + Gm25151 snoRNA snoRNA MGP_AJ_T0009535.1 MGP_AJ_G0007657.1 mouse_genomes_project 1 133959454 133959535 - Mir1231 miRNA miRNA MGP_AJ_T0012158.1 MGP_AJ_G0010253.1 mouse_genomes_project 1 99013300 99013853 + processed_pseudogene processed_pseudogene MGP_AJ_T0017012.1 MGP_AJ_G0015081.1 mouse_genomes_project 1 88128492 88130121 + D130058E05Rik processed_transcript antisense MGP_AJ_T0017013.1 MGP_AJ_G0015081.1 mouse_genomes_project 1 88128519 88131548 + D130058E05Rik processed_transcript retained_intron MGP_AJ_T0009517.1 MGP_AJ_G0007639.1 mouse_genomes_project 1 90673863 90673923 - Mir6900 miRNA miRNA MGP_AJ_T0024060.1 MGP_AJ_G0016895.1 mouse_genomes_project 1 184240792 184287134 + Eprs protein_coding retained_intron MGP_AJ_T0024061.1 MGP_AJ_G0016895.1 mouse_genomes_project 1 184240792 184305776 + MGP_AJ_P0024061 Eprs protein_coding protein_coding MGP_AJ_T0024062.1 MGP_AJ_G0016895.1 mouse_genomes_project 1 184240806 184244673 + Eprs protein_coding retained_intron MGP_AJ_T0024063.1 MGP_AJ_G0016895.1 mouse_genomes_project 1 184240880 184254631 + Eprs protein_coding retained_intron MGP_AJ_T0024064.1 MGP_AJ_G0016895.1 mouse_genomes_project 1 184240932 184259497 + MGP_AJ_P0024064 Eprs protein_coding nonsense_mediated_decay MGP_AJ_T0024065.1 MGP_AJ_G0016895.1 mouse_genomes_project 1 184243186 184250982 + Eprs protein_coding retained_intron MGP_AJ_T0024066.1 MGP_AJ_G0016895.1 mouse_genomes_project 1 184245289 184256543 + MGP_AJ_P0024066 Eprs protein_coding nonsense_mediated_decay MGP_AJ_T0024067.1 MGP_AJ_G0016895.1 mouse_genomes_project 1 184245296 184252002 + Eprs protein_coding retained_intron MGP_AJ_T0024068.1 MGP_AJ_G0016895.1 mouse_genomes_project 1 184276824 184280480 + Eprs protein_coding retained_intron MGP_AJ_T0019537.1 MGP_AJ_G0015952.1 mouse_genomes_project 1 38154504 38181104 + MGP_AJ_P0019537 Il18r1 protein_coding protein_coding MGP_AJ_T0019538.1 MGP_AJ_G0015952.1 mouse_genomes_project 1 38154628 38181106 + MGP_AJ_P0019538 Il18r1 protein_coding protein_coding MGP_AJ_T0019539.1 MGP_AJ_G0015952.1 mouse_genomes_project 1 38154922 38181104 + MGP_AJ_P0019539 Il18r1 protein_coding protein_coding MGP_AJ_T0019540.1 MGP_AJ_G0015952.1 mouse_genomes_project 1 38154958 38190483 + MGP_AJ_P0019540 Il18r1 protein_coding protein_coding MGP_AJ_T0019541.1 MGP_AJ_G0015952.1 mouse_genomes_project 1 38154958 38190484 + MGP_AJ_P0019541 Il18r1 protein_coding protein_coding MGP_AJ_T0019542.1 MGP_AJ_G0015952.1 mouse_genomes_project 1 38154958 38190463 + MGP_AJ_P0019542 Il18r1 protein_coding protein_coding MGP_AJ_T0000572.1 MGP_AJ_G0000513.1 mouse_genomes_project 1 96157772 96159456 - TEC TEC MGP_AJ_T0023628.1 MGP_AJ_G0016790.1 mouse_genomes_project 1 172163252 172168368 - protein_coding retained_intron MGP_AJ_T0099225.1 MGP_AJ_G0037191.1 mouse_genomes_project 1 170302384 170302439 - Gm26412 snRNA snRNA MGP_AJ_T0024080.1 MGP_AJ_G0016900.1 mouse_genomes_project 1 185840686 185843898 + MGP_AJ_P0024080 D1Pas1 protein_coding protein_coding MGP_AJ_T0012008.1 MGP_AJ_G0010103.1 mouse_genomes_project 1 45689465 45690292 - processed_pseudogene processed_pseudogene MGP_AJ_T0099202.1 MGP_AJ_G0037168.1 mouse_genomes_project 1 130542463 130542579 + Gm26034 snRNA snRNA MGP_AJ_T0022359.1 MGP_AJ_G0016523.1 mouse_genomes_project 1 134776229 134853742 - MGP_AJ_P0022359 Camsap2 protein_coding protein_coding MGP_AJ_T0022360.1 MGP_AJ_G0016523.1 mouse_genomes_project 1 134776358 134789845 - MGP_AJ_P0022360 Camsap2 protein_coding protein_coding MGP_AJ_T0022361.1 MGP_AJ_G0016523.1 mouse_genomes_project 1 134777266 134853336 - MGP_AJ_P0022361 Camsap2 protein_coding protein_coding MGP_AJ_T0022362.1 MGP_AJ_G0016523.1 mouse_genomes_project 1 134778712 134853336 - MGP_AJ_P0022362 Camsap2 protein_coding protein_coding MGP_AJ_T0022363.1 MGP_AJ_G0016523.1 mouse_genomes_project 1 134802551 134805444 - Camsap2 protein_coding processed_transcript MGP_AJ_T0022364.1 MGP_AJ_G0016523.1 mouse_genomes_project 1 134840213 134853728 - Camsap2 protein_coding processed_transcript MGP_AJ_T0098511.1 MGP_AJ_G0036495.1 mouse_genomes_project 1 133643349 133643450 - Gm26280 rRNA rRNA MGP_AJ_T0100404.1 MGP_AJ_G0038370.1 mouse_genomes_project 1 13026484 13026596 - Gm25227 snoRNA snoRNA MGP_AJ_T0022031.1 MGP_AJ_G0016453.1 mouse_genomes_project 1 130758822 130776525 + MGP_AJ_P0022031 Nuak2 protein_coding protein_coding MGP_AJ_T0022032.1 MGP_AJ_G0016453.1 mouse_genomes_project 1 130758822 130776721 + MGP_AJ_P0022032 Nuak2 protein_coding protein_coding MGP_AJ_T0022033.1 MGP_AJ_G0016453.1 mouse_genomes_project 1 130758861 130760433 + Nuak2 protein_coding processed_transcript MGP_AJ_T0022034.1 MGP_AJ_G0016453.1 mouse_genomes_project 1 130770211 130773681 + Nuak2 protein_coding retained_intron MGP_AJ_T0012038.1 MGP_AJ_G0010133.1 mouse_genomes_project 1 53194207 53195100 - processed_pseudogene processed_pseudogene MGP_AJ_T0098880.1 MGP_AJ_G0036863.1 mouse_genomes_project 1 142227251 142230916 + Gm29170 sense_intronic sense_intronic MGP_AJ_T0021033.1 MGP_AJ_G0016229.1 mouse_genomes_project 1 84438675 84440309 + MGP_AJ_P0021033 1700019O17Rik protein_coding protein_coding MGP_AJ_T0011945.1 MGP_AJ_G0010040.1 mouse_genomes_project 1 28825466 28826030 + processed_pseudogene processed_pseudogene MGP_AJ_T0099201.1 MGP_AJ_G0037167.1 mouse_genomes_project 1 129512942 129513036 - Gm25549 snRNA snRNA MGP_AJ_T0002875.1 MGP_AJ_G0002710.1 mouse_genomes_project 1 126291027 126298953 + Gm28800 antisense antisense MGP_AJ_T0012331.1 MGP_AJ_G0010426.1 mouse_genomes_project 1 169475413 169475749 - processed_pseudogene processed_pseudogene MGP_AJ_T0023610.1 MGP_AJ_G0016785.1 mouse_genomes_project 1 171914378 171949045 - MGP_AJ_P0023610 Cadm3 protein_coding protein_coding MGP_AJ_T0023611.1 MGP_AJ_G0016785.1 mouse_genomes_project 1 171917114 171949035 - MGP_AJ_P0023611 Cadm3 protein_coding protein_coding MGP_AJ_T0023612.1 MGP_AJ_G0016785.1 mouse_genomes_project 1 171917966 171923057 - Cadm3 protein_coding retained_intron MGP_AJ_T0023613.1 MGP_AJ_G0016785.1 mouse_genomes_project 1 171923623 171948998 - Cadm3 protein_coding retained_intron MGP_AJ_T0023614.1 MGP_AJ_G0016785.1 mouse_genomes_project 1 171926011 171948983 - Cadm3 protein_coding retained_intron MGP_AJ_T0021050.1 MGP_AJ_G0016234.1 mouse_genomes_project 1 84727000 84775635 + Dis3l2 protein_coding processed_transcript MGP_AJ_T0021051.1 MGP_AJ_G0016234.1 mouse_genomes_project 1 84727011 85082821 + MGP_AJ_P0021051 Dis3l2 protein_coding protein_coding MGP_AJ_T0021052.1 MGP_AJ_G0016234.1 mouse_genomes_project 1 84727020 84915279 + Dis3l2 protein_coding retained_intron MGP_AJ_T0021053.1 MGP_AJ_G0016234.1 mouse_genomes_project 1 84727020 85081921 + MGP_AJ_P0021053 Dis3l2 protein_coding nonsense_mediated_decay MGP_AJ_T0021054.1 MGP_AJ_G0016234.1 mouse_genomes_project 1 84727035 85082818 + MGP_AJ_P0021054 Dis3l2 protein_coding protein_coding MGP_AJ_T0021055.1 MGP_AJ_G0016234.1 mouse_genomes_project 1 84885952 84886687 + Dis3l2 protein_coding retained_intron MGP_AJ_T0005668.1 MGP_AJ_G0004770.1 mouse_genomes_project 1 25305450 25323831 + Gm5524 lincRNA lincRNA MGP_AJ_T0021731.1 MGP_AJ_G0016385.1 mouse_genomes_project 1 118441524 118448215 - MGP_AJ_P0021731 Tmem37 protein_coding protein_coding MGP_AJ_T0022098.1 MGP_AJ_G0016466.1 mouse_genomes_project 1 131767338 131787134 + MGP_AJ_P0022098 protein_coding protein_coding MGP_AJ_T0022099.1 MGP_AJ_G0016466.1 mouse_genomes_project 1 131767338 131787168 + MGP_AJ_P0022099 protein_coding protein_coding MGP_AJ_T0022104.1 MGP_AJ_G0016466.1 mouse_genomes_project 1 131781360 131787168 + MGP_AJ_P0022104 protein_coding protein_coding MGP_AJ_T0019689.1 MGP_AJ_G0015985.1 mouse_genomes_project 1 49247929 49260089 - MGP_AJ_P0019689 Nabp1 protein_coding protein_coding MGP_AJ_T0019690.1 MGP_AJ_G0015985.1 mouse_genomes_project 1 49247936 49260574 - MGP_AJ_P0019690 Nabp1 protein_coding nonsense_mediated_decay MGP_AJ_T0019691.1 MGP_AJ_G0015985.1 mouse_genomes_project 1 49248081 49260241 - MGP_AJ_P0019691 Nabp1 protein_coding nonsense_mediated_decay MGP_AJ_T0019692.1 MGP_AJ_G0015985.1 mouse_genomes_project 1 49251932 49260574 - MGP_AJ_P0019692 Nabp1 protein_coding protein_coding MGP_AJ_T0019693.1 MGP_AJ_G0015985.1 mouse_genomes_project 1 49253414 49255473 - Nabp1 protein_coding retained_intron MGP_AJ_T0019694.1 MGP_AJ_G0015985.1 mouse_genomes_project 1 49257765 49260574 - Nabp1 protein_coding retained_intron MGP_AJ_T0012004.1 MGP_AJ_G0010099.1 mouse_genomes_project 1 43709069 43710143 - processed_pseudogene processed_pseudogene MGP_AJ_T0009534.1 MGP_AJ_G0007656.1 mouse_genomes_project 1 133289047 133289135 + Gm22232 miRNA miRNA MGP_AJ_T0021494.1 MGP_AJ_G0016330.1 mouse_genomes_project 1 92023704 92033341 - MGP_AJ_P0021494 Dtymk protein_coding protein_coding MGP_AJ_T0021495.1 MGP_AJ_G0016330.1 mouse_genomes_project 1 92023852 92030297 - MGP_AJ_P0021495 Dtymk protein_coding protein_coding MGP_AJ_T0021496.1 MGP_AJ_G0016330.1 mouse_genomes_project 1 92029675 92030657 - Dtymk protein_coding processed_transcript MGP_AJ_T0021497.1 MGP_AJ_G0016330.1 mouse_genomes_project 1 92031351 92033313 - MGP_AJ_P0021497 Dtymk protein_coding protein_coding MGP_AJ_T0019027.1 MGP_AJ_G0015847.1 mouse_genomes_project 1 15627260 15639300 - MGP_AJ_P0019027 Defb41 protein_coding protein_coding MGP_AJ_T0019028.1 MGP_AJ_G0015847.1 mouse_genomes_project 1 15634685 15639242 - MGP_AJ_P0019028 Defb41 protein_coding protein_coding MGP_AJ_T0100425.1 MGP_AJ_G0038391.1 mouse_genomes_project 1 55245008 55245138 - Gm22371 snoRNA snoRNA MGP_AJ_T0012249.1 MGP_AJ_G0010344.1 mouse_genomes_project 1 136693272 136693756 + processed_pseudogene processed_pseudogene MGP_AJ_T0098507.1 MGP_AJ_G0036491.1 mouse_genomes_project 1 87761923 87762038 + Gm25180 rRNA rRNA MGP_AJ_T0024008.1 MGP_AJ_G0016882.1 mouse_genomes_project 1 182217016 182236267 - MGP_AJ_P0024008 protein_coding protein_coding MGP_AJ_T0024009.1 MGP_AJ_G0016882.1 mouse_genomes_project 1 182217118 182224931 - MGP_AJ_P0024009 protein_coding protein_coding MGP_AJ_T0024010.1 MGP_AJ_G0016882.1 mouse_genomes_project 1 182217631 182260131 - MGP_AJ_P0024010 protein_coding unknown_likely_coding MGP_AJ_T0024011.1 MGP_AJ_G0016882.1 mouse_genomes_project 1 182225921 182229604 - MGP_AJ_P0024011 protein_coding protein_coding MGP_AJ_T0024012.1 MGP_AJ_G0016882.1 mouse_genomes_project 1 182234702 182242079 - protein_coding retained_intron MGP_AJ_T0024013.1 MGP_AJ_G0016882.1 mouse_genomes_project 1 182235198 182242057 - MGP_AJ_P0024013 protein_coding protein_coding MGP_AJ_T0024014.1 MGP_AJ_G0016882.1 mouse_genomes_project 1 182249340 182260155 - MGP_AJ_P0024014 protein_coding protein_coding MGP_AJ_T0009522.1 MGP_AJ_G0007644.1 mouse_genomes_project 1 94553460 94553570 + Gm22917 miRNA miRNA MGP_AJ_T0012124.1 MGP_AJ_G0010219.1 mouse_genomes_project 1 81039899 81040271 + processed_pseudogene processed_pseudogene MGP_AJ_T0019927.1 MGP_AJ_G0016028.1 mouse_genomes_project 1 55851750 55929423 + MGP_AJ_P0019927 Aox1 protein_coding protein_coding MGP_AJ_T0019928.1 MGP_AJ_G0016028.1 mouse_genomes_project 1 55851783 55893060 + Aox1 protein_coding retained_intron MGP_AJ_T0102156.1 MGP_AJ_G0039899.1 mouse_genomes_project 1 76389013 76389274 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0000782.1 MGP_AJ_G0000719.1 mouse_genomes_project 1 185594245 185596124 - TEC TEC MGP_AJ_T0002952.1 MGP_AJ_G0002769.1 mouse_genomes_project 1 170203280 170204431 + Gm37787 antisense antisense MGP_AJ_T0022020.1 MGP_AJ_G0016450.1 mouse_genomes_project 1 130634517 130702102 + MGP_AJ_P0022020 Lemd1 protein_coding protein_coding MGP_AJ_T0022021.1 MGP_AJ_G0016450.1 mouse_genomes_project 1 130634541 130700257 + MGP_AJ_P0022021 Lemd1 protein_coding protein_coding MGP_AJ_T0022022.1 MGP_AJ_G0016450.1 mouse_genomes_project 1 130634543 130652635 + Lemd1 protein_coding processed_transcript MGP_AJ_T0022023.1 MGP_AJ_G0016450.1 mouse_genomes_project 1 130644049 130648872 + Lemd1 protein_coding processed_transcript MGP_AJ_T0022024.1 MGP_AJ_G0016450.1 mouse_genomes_project 1 130646940 130647598 + Lemd1 protein_coding processed_transcript MGP_AJ_T0022025.1 MGP_AJ_G0016450.1 mouse_genomes_project 1 130669457 130700064 + MGP_AJ_P0022025 Lemd1 protein_coding nonsense_mediated_decay MGP_AJ_T0022026.1 MGP_AJ_G0016450.1 mouse_genomes_project 1 130669486 130699884 + MGP_AJ_P0022026 Lemd1 protein_coding nonsense_mediated_decay MGP_AJ_T0022027.1 MGP_AJ_G0016450.1 mouse_genomes_project 1 130671161 130672596 + Lemd1 protein_coding retained_intron MGP_AJ_T0022028.1 MGP_AJ_G0016450.1 mouse_genomes_project 1 130671161 130699909 + MGP_AJ_P0022028 Lemd1 protein_coding protein_coding MGP_AJ_T0000564.1 MGP_AJ_G0000505.1 mouse_genomes_project 1 90179266 90184888 + TEC TEC MGP_AJ_T0019376.1 MGP_AJ_G0015920.1 mouse_genomes_project 1 34926315 34975785 + Inpp4a protein_coding processed_transcript MGP_AJ_T0019377.1 MGP_AJ_G0015920.1 mouse_genomes_project 1 34926341 35037526 + MGP_AJ_P0019377 Inpp4a protein_coding protein_coding MGP_AJ_T0019378.1 MGP_AJ_G0015920.1 mouse_genomes_project 1 34926343 34929217 + Inpp4a protein_coding retained_intron MGP_AJ_T0019379.1 MGP_AJ_G0015920.1 mouse_genomes_project 1 34926365 35026397 + MGP_AJ_P0019379 Inpp4a protein_coding protein_coding MGP_AJ_T0019380.1 MGP_AJ_G0015920.1 mouse_genomes_project 1 34926758 35035566 + MGP_AJ_P0019380 Inpp4a protein_coding protein_coding MGP_AJ_T0019381.1 MGP_AJ_G0015920.1 mouse_genomes_project 1 34926758 35035122 + MGP_AJ_P0019381 Inpp4a protein_coding protein_coding MGP_AJ_T0019382.1 MGP_AJ_G0015920.1 mouse_genomes_project 1 34984672 35030521 + MGP_AJ_P0019382 Inpp4a protein_coding protein_coding MGP_AJ_T0019383.1 MGP_AJ_G0015920.1 mouse_genomes_project 1 34984672 35035302 + MGP_AJ_P0019383 Inpp4a protein_coding protein_coding MGP_AJ_T0019384.1 MGP_AJ_G0015920.1 mouse_genomes_project 1 34985194 35035092 + MGP_AJ_P0019384 Inpp4a protein_coding protein_coding MGP_AJ_T0019385.1 MGP_AJ_G0015920.1 mouse_genomes_project 1 34996463 35031273 + MGP_AJ_P0019385 Inpp4a protein_coding protein_coding MGP_AJ_T0019386.1 MGP_AJ_G0015920.1 mouse_genomes_project 1 34996463 35031265 + MGP_AJ_P0019386 Inpp4a protein_coding protein_coding MGP_AJ_T0019387.1 MGP_AJ_G0015920.1 mouse_genomes_project 1 34996467 35031270 + MGP_AJ_P0019387 Inpp4a protein_coding protein_coding MGP_AJ_T0019388.1 MGP_AJ_G0015920.1 mouse_genomes_project 1 35004732 35007136 + Inpp4a protein_coding retained_intron MGP_AJ_T0102175.1 MGP_AJ_G0039918.1 mouse_genomes_project 1 103607623 103607844 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0023689.1 MGP_AJ_G0016819.1 mouse_genomes_project 1 174476226 174522452 + Wdr64 protein_coding processed_transcript MGP_AJ_T0023690.1 MGP_AJ_G0016819.1 mouse_genomes_project 1 174476226 174595377 + MGP_AJ_P0023690 Wdr64 protein_coding protein_coding MGP_AJ_T0023691.1 MGP_AJ_G0016819.1 mouse_genomes_project 1 174476226 174595377 + MGP_AJ_P0023691 Wdr64 protein_coding protein_coding MGP_AJ_T0023692.1 MGP_AJ_G0016819.1 mouse_genomes_project 1 174476420 174595009 + MGP_AJ_P0023692 Wdr64 protein_coding protein_coding MGP_AJ_T0023693.1 MGP_AJ_G0016819.1 mouse_genomes_project 1 174547689 174595374 + MGP_AJ_P0023693 Wdr64 protein_coding nonsense_mediated_decay MGP_AJ_T0011983.1 MGP_AJ_G0010078.1 mouse_genomes_project 1 40973954 40974407 + processed_pseudogene processed_pseudogene MGP_AJ_T0012349.1 MGP_AJ_G0010444.1 mouse_genomes_project 1 179990977 179992114 + processed_pseudogene processed_pseudogene MGP_AJ_T0102193.1 MGP_AJ_G0039936.1 mouse_genomes_project 1 172417565 172420456 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0005747.1 MGP_AJ_G0004825.1 mouse_genomes_project 1 59183251 59189473 - Gm28083 lincRNA lincRNA MGP_AJ_T0099222.1 MGP_AJ_G0037188.1 mouse_genomes_project 1 169381061 169381168 - Gm25235 snRNA snRNA MGP_AJ_T0012357.1 MGP_AJ_G0010452.1 mouse_genomes_project 1 182208378 182208804 + processed_pseudogene processed_pseudogene MGP_AJ_T0012350.1 MGP_AJ_G0010445.1 mouse_genomes_project 1 180188397 180190578 + processed_pseudogene processed_pseudogene MGP_AJ_T0012346.1 MGP_AJ_G0010441.1 mouse_genomes_project 1 179603381 179603859 + processed_pseudogene processed_pseudogene MGP_AJ_T0005922.1 MGP_AJ_G0004964.1 mouse_genomes_project 1 135209830 135240625 + Platr22 lincRNA lincRNA MGP_AJ_T0005672.1 MGP_AJ_G0004774.1 mouse_genomes_project 1 30782323 30785025 - Gm37591 lincRNA lincRNA MGP_AJ_T0012377.1 MGP_AJ_G0010472.1 mouse_genomes_project 1 191905268 191905383 + processed_pseudogene processed_pseudogene MGP_AJ_T0003004.1 MGP_AJ_G0002810.1 mouse_genomes_project 1 192052791 192076009 + 4930570N18Rik antisense antisense MGP_AJ_T0022700.1 MGP_AJ_G0016590.1 mouse_genomes_project 1 153576815 153580091 - MGP_AJ_P0022700 Ier5 protein_coding protein_coding MGP_AJ_T0022266.1 MGP_AJ_G0016506.1 mouse_genomes_project 1 133873394 133877532 - MGP_AJ_P0022266 Shisa4 protein_coding protein_coding MGP_AJ_T0022267.1 MGP_AJ_G0016506.1 mouse_genomes_project 1 133873397 133875794 - Shisa4 protein_coding retained_intron MGP_AJ_T0022268.1 MGP_AJ_G0016506.1 mouse_genomes_project 1 133876182 133877372 - Shisa4 protein_coding retained_intron MGP_AJ_T0000408.1 MGP_AJ_G0000350.1 mouse_genomes_project 1 23009745 23012599 - TEC TEC MGP_AJ_T0024314.1 MGP_AJ_G0016942.1 mouse_genomes_project 1 192125528 192126589 - MGP_AJ_P0024314 G0s2 protein_coding protein_coding MGP_AJ_T0020262.1 MGP_AJ_G0016090.1 mouse_genomes_project 1 62999709 63018073 - MGP_AJ_P0020262 D630023F18Rik protein_coding protein_coding MGP_AJ_T0020263.1 MGP_AJ_G0016090.1 mouse_genomes_project 1 63001843 63018052 - MGP_AJ_P0020263 D630023F18Rik protein_coding protein_coding MGP_AJ_T0020264.1 MGP_AJ_G0016090.1 mouse_genomes_project 1 63003246 63017973 - MGP_AJ_P0020264 D630023F18Rik protein_coding nonsense_mediated_decay MGP_AJ_T0002842.1 MGP_AJ_G0002684.1 mouse_genomes_project 1 80348516 80351353 - antisense antisense MGP_AJ_T0005968.1 MGP_AJ_G0004999.1 mouse_genomes_project 1 162115010 162118241 + Gm29500 lincRNA lincRNA MGP_AJ_T0002919.1 MGP_AJ_G0002744.1 mouse_genomes_project 1 155413095 155413454 + 4930439D14Rik antisense antisense MGP_AJ_T0024069.1 MGP_AJ_G0016896.1 mouse_genomes_project 1 184332044 184345911 + MGP_AJ_P0024069 Slc30a10 protein_coding protein_coding MGP_AJ_T0019407.1 MGP_AJ_G0015925.1 mouse_genomes_project 1 35382807 35506855 - MGP_AJ_P0019407 Tsga10 protein_coding protein_coding MGP_AJ_T0019408.1 MGP_AJ_G0015925.1 mouse_genomes_project 1 35388682 35508205 - MGP_AJ_P0019408 Tsga10 protein_coding protein_coding MGP_AJ_T0019409.1 MGP_AJ_G0015925.1 mouse_genomes_project 1 35388682 35497150 - MGP_AJ_P0019409 Tsga10 protein_coding protein_coding MGP_AJ_T0019410.1 MGP_AJ_G0015925.1 mouse_genomes_project 1 35435256 35497123 - MGP_AJ_P0019410 Tsga10 protein_coding nonsense_mediated_decay MGP_AJ_T0019411.1 MGP_AJ_G0015925.1 mouse_genomes_project 1 35473487 35506612 - MGP_AJ_P0019411 Tsga10 protein_coding protein_coding MGP_AJ_T0019412.1 MGP_AJ_G0015925.1 mouse_genomes_project 1 35474519 35506849 - MGP_AJ_P0019412 Tsga10 protein_coding protein_coding MGP_AJ_T0019413.1 MGP_AJ_G0015925.1 mouse_genomes_project 1 35475355 35506849 - MGP_AJ_P0019413 Tsga10 protein_coding protein_coding MGP_AJ_T0019414.1 MGP_AJ_G0015925.1 mouse_genomes_project 1 35481836 35485496 - Tsga10 protein_coding retained_intron MGP_AJ_T0018851.1 MGP_AJ_G0015815.1 mouse_genomes_project 1 7359594 7360950 + Cspp1 protein_coding retained_intron MGP_AJ_T0018852.1 MGP_AJ_G0015815.1 mouse_genomes_project 1 7359613 7369141 + MGP_AJ_P0018852 Cspp1 protein_coding protein_coding MGP_AJ_T0018853.1 MGP_AJ_G0015815.1 mouse_genomes_project 1 7359824 7461564 + MGP_AJ_P0018853 Cspp1 protein_coding protein_coding MGP_AJ_T0018854.1 MGP_AJ_G0015815.1 mouse_genomes_project 1 7359833 7383185 + Cspp1 protein_coding retained_intron MGP_AJ_T0018855.1 MGP_AJ_G0015815.1 mouse_genomes_project 1 7359856 7380472 + Cspp1 protein_coding retained_intron MGP_AJ_T0018856.1 MGP_AJ_G0015815.1 mouse_genomes_project 1 7359869 7389097 + MGP_AJ_P0018856 Cspp1 protein_coding protein_coding MGP_AJ_T0018857.1 MGP_AJ_G0015815.1 mouse_genomes_project 1 7361374 7380296 + Cspp1 protein_coding retained_intron MGP_AJ_T0018858.1 MGP_AJ_G0015815.1 mouse_genomes_project 1 7361380 7389955 + MGP_AJ_P0018858 Cspp1 protein_coding protein_coding MGP_AJ_T0018859.1 MGP_AJ_G0015815.1 mouse_genomes_project 1 7361380 7390312 + MGP_AJ_P0018859 Cspp1 protein_coding protein_coding MGP_AJ_T0018860.1 MGP_AJ_G0015815.1 mouse_genomes_project 1 7361384 7380282 + Cspp1 protein_coding retained_intron MGP_AJ_T0018861.1 MGP_AJ_G0015815.1 mouse_genomes_project 1 7361392 7389081 + MGP_AJ_P0018861 Cspp1 protein_coding protein_coding MGP_AJ_T0018862.1 MGP_AJ_G0015815.1 mouse_genomes_project 1 7361430 7381405 + Cspp1 protein_coding retained_intron MGP_AJ_T0018863.1 MGP_AJ_G0015815.1 mouse_genomes_project 1 7361762 7380247 + MGP_AJ_P0018863 Cspp1 protein_coding protein_coding MGP_AJ_T0018864.1 MGP_AJ_G0015815.1 mouse_genomes_project 1 7368099 7460941 + MGP_AJ_P0018864 Cspp1 protein_coding protein_coding MGP_AJ_T0018865.1 MGP_AJ_G0015815.1 mouse_genomes_project 1 7378347 7388554 + MGP_AJ_P0018865 Cspp1 protein_coding protein_coding MGP_AJ_T0018866.1 MGP_AJ_G0015815.1 mouse_genomes_project 1 7393122 7398131 + Cspp1 protein_coding retained_intron MGP_AJ_T0018867.1 MGP_AJ_G0015815.1 mouse_genomes_project 1 7396321 7408104 + Cspp1 protein_coding retained_intron MGP_AJ_T0018868.1 MGP_AJ_G0015815.1 mouse_genomes_project 1 7396799 7406360 + Cspp1 protein_coding retained_intron MGP_AJ_T0018869.1 MGP_AJ_G0015815.1 mouse_genomes_project 1 7396852 7412542 + MGP_AJ_P0018869 Cspp1 protein_coding nonsense_mediated_decay MGP_AJ_T0018870.1 MGP_AJ_G0015815.1 mouse_genomes_project 1 7410033 7412604 + Cspp1 protein_coding retained_intron MGP_AJ_T0018871.1 MGP_AJ_G0015815.1 mouse_genomes_project 1 7418154 7431302 + Cspp1 protein_coding retained_intron MGP_AJ_T0018872.1 MGP_AJ_G0015815.1 mouse_genomes_project 1 7426976 7431291 + Cspp1 protein_coding retained_intron MGP_AJ_T0018873.1 MGP_AJ_G0015815.1 mouse_genomes_project 1 7435587 7459063 + MGP_AJ_P0018873 Cspp1 protein_coding nonsense_mediated_decay MGP_AJ_T0018874.1 MGP_AJ_G0015815.1 mouse_genomes_project 1 7438134 7439426 + Cspp1 protein_coding retained_intron MGP_AJ_T0018875.1 MGP_AJ_G0015815.1 mouse_genomes_project 1 7450963 7454908 + Cspp1 protein_coding retained_intron MGP_AJ_T0018876.1 MGP_AJ_G0015815.1 mouse_genomes_project 1 7454848 7458351 + Cspp1 protein_coding retained_intron MGP_AJ_T0018877.1 MGP_AJ_G0015815.1 mouse_genomes_project 1 7458859 7461118 + Cspp1 protein_coding retained_intron MGP_AJ_T0021372.1 MGP_AJ_G0016309.1 mouse_genomes_project 1 91126975 91128430 + MGP_AJ_P0021372 Dusp28 protein_coding protein_coding MGP_AJ_T0002851.1 MGP_AJ_G0002693.1 mouse_genomes_project 1 89996203 90000669 - Gm29100 antisense antisense MGP_AJ_T0000686.1 MGP_AJ_G0000625.1 mouse_genomes_project 1 154380065 154380812 - TEC TEC MGP_AJ_T0012212.1 MGP_AJ_G0010307.1 mouse_genomes_project 1 118191483 118191846 + processed_pseudogene processed_pseudogene MGP_AJ_T0100398.1 MGP_AJ_G0038364.1 mouse_genomes_project 1 4434922 4435052 + Gm23274 snoRNA snoRNA MGP_AJ_T0002910.1 MGP_AJ_G0002737.1 mouse_genomes_project 1 149758823 149763269 - Gm10138 antisense antisense MGP_AJ_T0002911.1 MGP_AJ_G0002737.1 mouse_genomes_project 1 149761924 149764424 - Gm10138 antisense antisense MGP_AJ_T0002912.1 MGP_AJ_G0002737.1 mouse_genomes_project 1 149763555 149763929 - Gm10138 antisense pseudogene MGP_AJ_T0012021.1 MGP_AJ_G0010116.1 mouse_genomes_project 1 48308495 48308657 + processed_pseudogene processed_pseudogene MGP_AJ_T0012238.1 MGP_AJ_G0010333.1 mouse_genomes_project 1 129889400 129889656 - processed_pseudogene processed_pseudogene MGP_AJ_T0100465.1 MGP_AJ_G0038431.1 mouse_genomes_project 1 135877410 135877507 - Gm23534 snoRNA snoRNA MGP_AJ_T0000563.1 MGP_AJ_G0000504.1 mouse_genomes_project 1 90119415 90122711 + TEC TEC MGP_AJ_T0009506.1 MGP_AJ_G0007628.1 mouse_genomes_project 1 74436914 74436998 + Mir6343 miRNA miRNA MGP_AJ_T0011976.1 MGP_AJ_G0010071.1 mouse_genomes_project 1 36569594 36570366 + processed_pseudogene processed_pseudogene MGP_AJ_T0012160.1 MGP_AJ_G0010255.1 mouse_genomes_project 1 99070710 99071067 + processed_pseudogene processed_pseudogene MGP_AJ_T0000435.1 MGP_AJ_G0000376.1 mouse_genomes_project 1 31495028 31496656 - TEC TEC MGP_AJ_T0005948.1 MGP_AJ_G0004985.1 mouse_genomes_project 1 152709275 152718428 - lincRNA lincRNA MGP_AJ_T0005826.1 MGP_AJ_G0004884.1 mouse_genomes_project 1 87066600 87074190 - Gm29337 lincRNA lincRNA MGP_AJ_T0012363.1 MGP_AJ_G0010458.1 mouse_genomes_project 1 185878961 185879559 - processed_pseudogene processed_pseudogene MGP_AJ_T0023127.1 MGP_AJ_G0016669.1 mouse_genomes_project 1 163650659 163676280 - MGP_AJ_P0023127 Tbx19 protein_coding protein_coding MGP_AJ_T0023128.1 MGP_AJ_G0016669.1 mouse_genomes_project 1 163651693 163665215 - Tbx19 protein_coding processed_transcript MGP_AJ_T0023129.1 MGP_AJ_G0016669.1 mouse_genomes_project 1 163651751 163669247 - MGP_AJ_P0023129 Tbx19 protein_coding protein_coding MGP_AJ_T0023130.1 MGP_AJ_G0016669.1 mouse_genomes_project 1 163655241 163664900 - Tbx19 protein_coding processed_transcript MGP_AJ_T0000720.1 MGP_AJ_G0000659.1 mouse_genomes_project 1 160313056 160316175 - TEC TEC MGP_AJ_T0009555.1 MGP_AJ_G0007677.1 mouse_genomes_project 1 170210236 170210297 - Mir7683 miRNA miRNA MGP_AJ_T0022352.1 MGP_AJ_G0016521.1 mouse_genomes_project 1 134721531 134742253 - MGP_AJ_P0022352 5730559C18Rik protein_coding protein_coding MGP_AJ_T0022353.1 MGP_AJ_G0016521.1 mouse_genomes_project 1 134728270 134738282 - MGP_AJ_P0022353 5730559C18Rik protein_coding protein_coding MGP_AJ_T0022354.1 MGP_AJ_G0016521.1 mouse_genomes_project 1 134728308 134738303 - MGP_AJ_P0022354 5730559C18Rik protein_coding protein_coding MGP_AJ_T0022355.1 MGP_AJ_G0016521.1 mouse_genomes_project 1 134731555 134735655 - 5730559C18Rik protein_coding retained_intron MGP_AJ_T0022356.1 MGP_AJ_G0016521.1 mouse_genomes_project 1 134734185 134742108 - MGP_AJ_P0022356 5730559C18Rik protein_coding nonsense_mediated_decay MGP_AJ_T0022357.1 MGP_AJ_G0016521.1 mouse_genomes_project 1 134734206 134738012 - MGP_AJ_P0022357 5730559C18Rik protein_coding protein_coding MGP_AJ_T0000595.1 MGP_AJ_G0000536.1 mouse_genomes_project 1 121746552 121749560 - TEC TEC MGP_AJ_T0012252.1 MGP_AJ_G0010347.1 mouse_genomes_project 1 137348951 137349174 - processed_pseudogene processed_pseudogene MGP_AJ_T0019158.1 MGP_AJ_G0015882.1 mouse_genomes_project 1 28748546 28749997 + MGP_AJ_P0019158 Pih1d3 protein_coding protein_coding MGP_AJ_T0021647.1 MGP_AJ_G0016370.1 mouse_genomes_project 1 116204621 116223009 + MGP_AJ_P0021647 protein_coding protein_coding MGP_AJ_T0023887.1 MGP_AJ_G0016858.1 mouse_genomes_project 1 179833261 179868296 + MGP_AJ_P0023887 Tmem63a protein_coding unknown_likely_coding MGP_AJ_T0023888.1 MGP_AJ_G0016858.1 mouse_genomes_project 1 179833277 179844270 + MGP_AJ_P0023888 Tmem63a protein_coding protein_coding MGP_AJ_T0023889.1 MGP_AJ_G0016858.1 mouse_genomes_project 1 179833391 179846971 + MGP_AJ_P0023889 Tmem63a protein_coding nonsense_mediated_decay MGP_AJ_T0023890.1 MGP_AJ_G0016858.1 mouse_genomes_project 1 179833392 179868304 + MGP_AJ_P0023890 Tmem63a protein_coding protein_coding MGP_AJ_T0023891.1 MGP_AJ_G0016858.1 mouse_genomes_project 1 179833507 179848370 + MGP_AJ_P0023891 Tmem63a protein_coding protein_coding MGP_AJ_T0023892.1 MGP_AJ_G0016858.1 mouse_genomes_project 1 179834968 179868295 + MGP_AJ_P0023892 Tmem63a protein_coding protein_coding MGP_AJ_T0023893.1 MGP_AJ_G0016858.1 mouse_genomes_project 1 179836920 179837729 + MGP_AJ_P0023893 Tmem63a protein_coding protein_coding MGP_AJ_T0023894.1 MGP_AJ_G0016858.1 mouse_genomes_project 1 179836976 179840842 + MGP_AJ_P0023894 Tmem63a protein_coding protein_coding MGP_AJ_T0023895.1 MGP_AJ_G0016858.1 mouse_genomes_project 1 179852299 179853074 + Tmem63a protein_coding retained_intron MGP_AJ_T0005879.1 MGP_AJ_G0004929.1 mouse_genomes_project 1 118279912 118283613 + Gm28209 lincRNA lincRNA MGP_AJ_T0009554.1 MGP_AJ_G0007676.1 mouse_genomes_project 1 169615707 169623676 - miRNA miRNA MGP_AJ_T0005884.1 MGP_AJ_G0004933.1 mouse_genomes_project 1 119204393 119228639 + Gm29345 lincRNA lincRNA MGP_AJ_T0098508.1 MGP_AJ_G0036492.1 mouse_genomes_project 1 88527703 88527810 + Gm27648 rRNA rRNA MGP_AJ_T0000657.1 MGP_AJ_G0000596.1 mouse_genomes_project 1 137514313 137517106 + TEC TEC MGP_AJ_T0005902.1 MGP_AJ_G0004947.1 mouse_genomes_project 1 130478798 130509891 + Gm26892 lincRNA lincRNA MGP_AJ_T0000666.1 MGP_AJ_G0000605.1 mouse_genomes_project 1 143720100 143723354 - TEC TEC MGP_AJ_T0099169.1 MGP_AJ_G0037135.1 mouse_genomes_project 1 61205516 61205620 - Gm23448 snRNA snRNA MGP_AJ_T0023302.1 MGP_AJ_G0016709.1 mouse_genomes_project 1 168816455 168824563 - MGP_AJ_P0023302 Gm7694 protein_coding protein_coding MGP_AJ_T0022385.1 MGP_AJ_G0016528.1 mouse_genomes_project 1 136570530 136625787 - Ptprc protein_coding retained_intron MGP_AJ_T0022386.1 MGP_AJ_G0016528.1 mouse_genomes_project 1 136571076 136684463 - MGP_AJ_P0022386 Ptprc protein_coding protein_coding MGP_AJ_T0022387.1 MGP_AJ_G0016528.1 mouse_genomes_project 1 136571082 136684424 - MGP_AJ_P0022387 Ptprc protein_coding protein_coding MGP_AJ_T0022388.1 MGP_AJ_G0016528.1 mouse_genomes_project 1 136571089 136684457 - MGP_AJ_P0022388 Ptprc protein_coding protein_coding MGP_AJ_T0022389.1 MGP_AJ_G0016528.1 mouse_genomes_project 1 136621375 136624820 - Ptprc protein_coding retained_intron MGP_AJ_T0022390.1 MGP_AJ_G0016528.1 mouse_genomes_project 1 136621597 136684391 - MGP_AJ_P0022390 Ptprc protein_coding protein_coding MGP_AJ_T0022391.1 MGP_AJ_G0016528.1 mouse_genomes_project 1 136626682 136630064 - Ptprc protein_coding retained_intron MGP_AJ_T0022392.1 MGP_AJ_G0016528.1 mouse_genomes_project 1 136627183 136684457 - MGP_AJ_P0022392 Ptprc protein_coding protein_coding MGP_AJ_T0022393.1 MGP_AJ_G0016528.1 mouse_genomes_project 1 136628816 136684456 - Ptprc protein_coding retained_intron MGP_AJ_T0022394.1 MGP_AJ_G0016528.1 mouse_genomes_project 1 136633224 136684453 - Ptprc protein_coding retained_intron MGP_AJ_T0022395.1 MGP_AJ_G0016528.1 mouse_genomes_project 1 136635559 136684865 - Ptprc protein_coding retained_intron MGP_AJ_T0022396.1 MGP_AJ_G0016528.1 mouse_genomes_project 1 136681133 136684346 - Ptprc protein_coding retained_intron MGP_AJ_T0022397.1 MGP_AJ_G0016528.1 mouse_genomes_project 1 136681900 136684406 - Ptprc protein_coding retained_intron MGP_AJ_T0020420.1 MGP_AJ_G0016119.1 mouse_genomes_project 1 70776779 70804606 + MGP_AJ_P0020420 Igfbp2 protein_coding protein_coding MGP_AJ_T0020421.1 MGP_AJ_G0016119.1 mouse_genomes_project 1 70800810 70804260 + Igfbp2 protein_coding retained_intron MGP_AJ_T0000728.1 MGP_AJ_G0000667.1 mouse_genomes_project 1 163977932 163978966 + TEC TEC MGP_AJ_T0016988.1 MGP_AJ_G0015070.1 mouse_genomes_project 1 42075041 42076680 + Gm28893 processed_transcript processed_transcript MGP_AJ_T0020418.1 MGP_AJ_G0016117.1 mouse_genomes_project 1 70534584 70648408 - MGP_AJ_P0020418 Ankar protein_coding protein_coding MGP_AJ_T0023020.1 MGP_AJ_G0016642.1 mouse_genomes_project 1 161147678 161158256 + MGP_AJ_P0023020 Myoc protein_coding protein_coding MGP_AJ_T0011973.1 MGP_AJ_G0010068.1 mouse_genomes_project 1 35114740 35116530 - processed_pseudogene processed_pseudogene MGP_AJ_T0023390.1 MGP_AJ_G0016731.1 mouse_genomes_project 1 169851191 169857723 + MGP_AJ_P0023390 B4galt3 protein_coding protein_coding MGP_AJ_T0023391.1 MGP_AJ_G0016731.1 mouse_genomes_project 1 169851202 169855142 + MGP_AJ_P0023391 B4galt3 protein_coding protein_coding MGP_AJ_T0023392.1 MGP_AJ_G0016731.1 mouse_genomes_project 1 169851206 169857724 + MGP_AJ_P0023392 B4galt3 protein_coding protein_coding MGP_AJ_T0023393.1 MGP_AJ_G0016731.1 mouse_genomes_project 1 169851206 169852793 + MGP_AJ_P0023393 B4galt3 protein_coding protein_coding MGP_AJ_T0023394.1 MGP_AJ_G0016731.1 mouse_genomes_project 1 169851217 169852894 + B4galt3 protein_coding retained_intron MGP_AJ_T0023395.1 MGP_AJ_G0016731.1 mouse_genomes_project 1 169851228 169857723 + MGP_AJ_P0023395 B4galt3 protein_coding protein_coding MGP_AJ_T0023396.1 MGP_AJ_G0016731.1 mouse_genomes_project 1 169851237 169857724 + B4galt3 protein_coding retained_intron MGP_AJ_T0023397.1 MGP_AJ_G0016731.1 mouse_genomes_project 1 169851271 169852223 + B4galt3 protein_coding processed_transcript MGP_AJ_T0023398.1 MGP_AJ_G0016731.1 mouse_genomes_project 1 169851681 169852496 + B4galt3 protein_coding retained_intron MGP_AJ_T0023399.1 MGP_AJ_G0016731.1 mouse_genomes_project 1 169852493 169853458 + MGP_AJ_P0023399 B4galt3 protein_coding protein_coding MGP_AJ_T0023400.1 MGP_AJ_G0016731.1 mouse_genomes_project 1 169854369 169857722 + B4galt3 protein_coding retained_intron MGP_AJ_T0000352.1 MGP_AJ_G0000296.1 mouse_genomes_project 1 844786 847137 + TEC TEC MGP_AJ_T0020649.1 MGP_AJ_G0016161.1 mouse_genomes_project 1 73133557 73138326 + MGP_AJ_P0020649 Stk16 protein_coding protein_coding MGP_AJ_T0020650.1 MGP_AJ_G0016161.1 mouse_genomes_project 1 73133565 73134591 + Stk16 protein_coding retained_intron MGP_AJ_T0020651.1 MGP_AJ_G0016161.1 mouse_genomes_project 1 73133567 73134955 + MGP_AJ_P0020651 Stk16 protein_coding protein_coding MGP_AJ_T0020652.1 MGP_AJ_G0016161.1 mouse_genomes_project 1 73133589 73136962 + MGP_AJ_P0020652 Stk16 protein_coding nonsense_mediated_decay MGP_AJ_T0020653.1 MGP_AJ_G0016161.1 mouse_genomes_project 1 73133593 73134954 + MGP_AJ_P0020653 Stk16 protein_coding protein_coding MGP_AJ_T0020654.1 MGP_AJ_G0016161.1 mouse_genomes_project 1 73133595 73136959 + Stk16 protein_coding retained_intron MGP_AJ_T0020655.1 MGP_AJ_G0016161.1 mouse_genomes_project 1 73133599 73135857 + Stk16 protein_coding processed_transcript MGP_AJ_T0020656.1 MGP_AJ_G0016161.1 mouse_genomes_project 1 73133773 73135948 + MGP_AJ_P0020656 Stk16 protein_coding protein_coding MGP_AJ_T0020657.1 MGP_AJ_G0016161.1 mouse_genomes_project 1 73133959 73136671 + MGP_AJ_P0020657 Stk16 protein_coding protein_coding MGP_AJ_T0020658.1 MGP_AJ_G0016161.1 mouse_genomes_project 1 73134681 73135907 + Stk16 protein_coding retained_intron MGP_AJ_T0020659.1 MGP_AJ_G0016161.1 mouse_genomes_project 1 73134722 73135813 + Stk16 protein_coding retained_intron MGP_AJ_T0020660.1 MGP_AJ_G0016161.1 mouse_genomes_project 1 73134724 73135125 + Stk16 protein_coding retained_intron MGP_AJ_T0020661.1 MGP_AJ_G0016161.1 mouse_genomes_project 1 73135118 73135875 + Stk16 protein_coding retained_intron MGP_AJ_T0020662.1 MGP_AJ_G0016161.1 mouse_genomes_project 1 73135343 73136736 + Stk16 protein_coding processed_transcript MGP_AJ_T0020663.1 MGP_AJ_G0016161.1 mouse_genomes_project 1 73135351 73136633 + Stk16 protein_coding retained_intron MGP_AJ_T0020664.1 MGP_AJ_G0016161.1 mouse_genomes_project 1 73135780 73136751 + Stk16 protein_coding retained_intron MGP_AJ_T0012036.1 MGP_AJ_G0010131.1 mouse_genomes_project 1 52974206 52974513 - processed_pseudogene processed_pseudogene MGP_AJ_T0019688.1 MGP_AJ_G0015984.1 mouse_genomes_project 1 49073306 49087187 + MGP_AJ_P0019688 Sdpr protein_coding protein_coding MGP_AJ_T0099171.1 MGP_AJ_G0037137.1 mouse_genomes_project 1 62897451 62897607 - Gm24788 snRNA snRNA MGP_AJ_T0000443.1 MGP_AJ_G0000384.1 mouse_genomes_project 1 34482130 34482273 - TEC TEC MGP_AJ_T0000357.1 MGP_AJ_G0000301.1 mouse_genomes_project 1 2548038 2550071 + TEC TEC MGP_AJ_T0020499.1 MGP_AJ_G0016135.1 mouse_genomes_project 1 72406794 72480127 - MGP_AJ_P0020499 Usp37 protein_coding protein_coding MGP_AJ_T0020500.1 MGP_AJ_G0016135.1 mouse_genomes_project 1 72409176 72519475 - MGP_AJ_P0020500 Usp37 protein_coding protein_coding MGP_AJ_T0020501.1 MGP_AJ_G0016135.1 mouse_genomes_project 1 72410558 72438794 - Usp37 protein_coding processed_transcript MGP_AJ_T0020502.1 MGP_AJ_G0016135.1 mouse_genomes_project 1 72420920 72480109 - Usp37 protein_coding retained_intron MGP_AJ_T0020503.1 MGP_AJ_G0016135.1 mouse_genomes_project 1 72470249 72480130 - MGP_AJ_P0020503 Usp37 protein_coding protein_coding MGP_AJ_T0020504.1 MGP_AJ_G0016135.1 mouse_genomes_project 1 72474403 72480115 - Usp37 protein_coding retained_intron MGP_AJ_T0020505.1 MGP_AJ_G0016135.1 mouse_genomes_project 1 72474487 72480607 - Usp37 protein_coding processed_transcript MGP_AJ_T0023485.1 MGP_AJ_G0016751.1 mouse_genomes_project 1 170461132 170463671 + MGP_AJ_P0023485 Gm10521 protein_coding protein_coding MGP_AJ_T0101694.1 MGP_AJ_G0039648.1 mouse_genomes_project 1 182091509 182092263 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0098866.1 MGP_AJ_G0036850.1 mouse_genomes_project 1 50468694 50471185 - Gm29670 sense_intronic sense_intronic MGP_AJ_T0002777.1 MGP_AJ_G0002637.1 mouse_genomes_project 1 34741867 34742859 - Gm37020 antisense antisense MGP_AJ_T0000809.1 MGP_AJ_G0000745.1 mouse_genomes_project 1 194088246 194090962 - TEC TEC MGP_AJ_T0005974.1 MGP_AJ_G0005005.1 mouse_genomes_project 1 163192196 163220092 + Gm37184 lincRNA lincRNA MGP_AJ_T0019465.1 MGP_AJ_G0015935.1 mouse_genomes_project 1 36456979 36499058 - MGP_AJ_P0019465 Lonrf2 protein_coding protein_coding MGP_AJ_T0019466.1 MGP_AJ_G0015935.1 mouse_genomes_project 1 36457772 36483843 - MGP_AJ_P0019466 Lonrf2 protein_coding protein_coding MGP_AJ_T0019467.1 MGP_AJ_G0015935.1 mouse_genomes_project 1 36497826 36499004 - Lonrf2 protein_coding retained_intron MGP_AJ_T0099238.1 MGP_AJ_G0037204.1 mouse_genomes_project 1 190682266 190682380 - Gm26203 snRNA snRNA MGP_AJ_T0005800.1 MGP_AJ_G0004863.1 mouse_genomes_project 1 75875859 75909142 - Gm28387 lincRNA lincRNA MGP_AJ_T0012149.1 MGP_AJ_G0010244.1 mouse_genomes_project 1 94912461 94913326 + processed_pseudogene processed_pseudogene MGP_AJ_T0019684.1 MGP_AJ_G0015983.1 mouse_genomes_project 1 48682661 48696311 + Tmeff2 protein_coding processed_transcript MGP_AJ_T0019685.1 MGP_AJ_G0015983.1 mouse_genomes_project 1 48682661 48697863 + Tmeff2 protein_coding processed_transcript MGP_AJ_T0019686.1 MGP_AJ_G0015983.1 mouse_genomes_project 1 48692344 48763589 + MGP_AJ_P0019686 Tmeff2 protein_coding protein_coding MGP_AJ_T0019687.1 MGP_AJ_G0015983.1 mouse_genomes_project 1 48710582 48971953 + MGP_AJ_P0019687 Tmeff2 protein_coding protein_coding MGP_AJ_T0099194.1 MGP_AJ_G0037160.1 mouse_genomes_project 1 117049212 117049342 + Gm23497 snRNA snRNA MGP_AJ_T0012126.1 MGP_AJ_G0010221.1 mouse_genomes_project 1 81191658 81192499 - processed_pseudogene processed_pseudogene MGP_AJ_T0009513.1 MGP_AJ_G0007635.1 mouse_genomes_project 1 83754873 83754951 + Gm25472 miRNA miRNA MGP_AJ_T0022925.1 MGP_AJ_G0016626.1 mouse_genomes_project 1 159461692 159464868 + Serpinc1 protein_coding retained_intron MGP_AJ_T0022926.1 MGP_AJ_G0016626.1 mouse_genomes_project 1 159461713 159481136 + MGP_AJ_P0022926 Serpinc1 protein_coding nonsense_mediated_decay MGP_AJ_T0022927.1 MGP_AJ_G0016626.1 mouse_genomes_project 1 159461795 159473201 + MGP_AJ_P0022927 Serpinc1 protein_coding protein_coding MGP_AJ_T0022928.1 MGP_AJ_G0016626.1 mouse_genomes_project 1 159468317 159481165 + MGP_AJ_P0022928 Serpinc1 protein_coding protein_coding MGP_AJ_T0022929.1 MGP_AJ_G0016626.1 mouse_genomes_project 1 159470630 159473291 + Serpinc1 protein_coding retained_intron MGP_AJ_T0022930.1 MGP_AJ_G0016626.1 mouse_genomes_project 1 159471085 159486376 + MGP_AJ_P0022930 Serpinc1 protein_coding protein_coding MGP_AJ_T0022931.1 MGP_AJ_G0016626.1 mouse_genomes_project 1 159472919 159486376 + MGP_AJ_P0022931 Serpinc1 protein_coding nonsense_mediated_decay MGP_AJ_T0000687.1 MGP_AJ_G0000626.1 mouse_genomes_project 1 154469052 154470257 + TEC TEC MGP_AJ_T0022441.1 MGP_AJ_G0016540.1 mouse_genomes_project 1 138312545 138366130 - MGP_AJ_P0022441 Cfhr2 protein_coding protein_coding MGP_AJ_T0000643.1 MGP_AJ_G0000583.1 mouse_genomes_project 1 136272125 136275977 - TEC TEC MGP_AJ_T0012162.1 MGP_AJ_G0010257.1 mouse_genomes_project 1 99777596 99778301 + processed_pseudogene processed_pseudogene MGP_AJ_T0022738.1 MGP_AJ_G0016596.1 mouse_genomes_project 1 154187291 154231439 - MGP_AJ_P0022738 Lhx4 protein_coding protein_coding MGP_AJ_T0022739.1 MGP_AJ_G0016596.1 mouse_genomes_project 1 154193944 154241160 - MGP_AJ_P0022739 Lhx4 protein_coding protein_coding MGP_AJ_T0023303.1 MGP_AJ_G0016710.1 mouse_genomes_project 1 168820920 168845954 - Nos1ap protein_coding processed_transcript MGP_AJ_T0023305.1 MGP_AJ_G0016710.1 mouse_genomes_project 1 168834818 169123059 - MGP_AJ_P0023305 Nos1ap protein_coding protein_coding MGP_AJ_T0023306.1 MGP_AJ_G0016710.1 mouse_genomes_project 1 168834858 168839106 - Nos1ap protein_coding retained_intron MGP_AJ_T0023307.1 MGP_AJ_G0016710.1 mouse_genomes_project 1 168836071 168842664 - Nos1ap protein_coding processed_transcript MGP_AJ_T0023308.1 MGP_AJ_G0016710.1 mouse_genomes_project 1 168845766 169122562 - MGP_AJ_P0023308 Nos1ap protein_coding protein_coding MGP_AJ_T0023309.1 MGP_AJ_G0016710.1 mouse_genomes_project 1 168845912 169122495 - MGP_AJ_P0023309 Nos1ap protein_coding protein_coding MGP_AJ_T0023310.1 MGP_AJ_G0016710.1 mouse_genomes_project 1 168856387 168984184 - Nos1ap protein_coding processed_transcript MGP_AJ_T0023311.1 MGP_AJ_G0016710.1 mouse_genomes_project 1 168894733 169123047 - Nos1ap protein_coding retained_intron MGP_AJ_T0018806.1 MGP_AJ_G0015806.1 mouse_genomes_project 1 6851488 6882281 + MGP_AJ_P0018806 Adhfe1 protein_coding protein_coding MGP_AJ_T0018807.1 MGP_AJ_G0015806.1 mouse_genomes_project 1 6851595 6881212 + MGP_AJ_P0018807 Adhfe1 protein_coding nonsense_mediated_decay MGP_AJ_T0018808.1 MGP_AJ_G0015806.1 mouse_genomes_project 1 6851632 6857228 + MGP_AJ_P0018808 Adhfe1 protein_coding nonsense_mediated_decay MGP_AJ_T0018809.1 MGP_AJ_G0015806.1 mouse_genomes_project 1 6851647 6859109 + MGP_AJ_P0018809 Adhfe1 protein_coding nonsense_mediated_decay MGP_AJ_T0018810.1 MGP_AJ_G0015806.1 mouse_genomes_project 1 6851659 6884987 + MGP_AJ_P0018810 Adhfe1 protein_coding nonsense_mediated_decay MGP_AJ_T0020252.1 MGP_AJ_G0016084.1 mouse_genomes_project 1 62944578 62947245 - MGP_AJ_P0020252 Cryge protein_coding protein_coding MGP_AJ_T0020253.1 MGP_AJ_G0016084.1 mouse_genomes_project 1 62944581 62947215 - MGP_AJ_P0020253 Cryge protein_coding protein_coding MGP_AJ_T0002998.1 MGP_AJ_G0002805.1 mouse_genomes_project 1 190892638 190895931 - Gm26670 antisense antisense MGP_AJ_T0000461.1 MGP_AJ_G0000402.1 mouse_genomes_project 1 43166169 43173376 - TEC TEC MGP_AJ_T0012373.1 MGP_AJ_G0010468.1 mouse_genomes_project 1 190700528 190700860 - processed_pseudogene processed_pseudogene MGP_AJ_T0023922.1 MGP_AJ_G0016865.1 mouse_genomes_project 1 180417746 180419677 - MGP_AJ_P0023922 Ccdc121 protein_coding protein_coding MGP_AJ_T0022106.1 MGP_AJ_G0016468.1 mouse_genomes_project 1 131808227 131818043 + MGP_AJ_P0022106 Ren1 protein_coding protein_coding MGP_AJ_T0022107.1 MGP_AJ_G0016468.1 mouse_genomes_project 1 131809626 131811994 + MGP_AJ_P0022107 Ren1 protein_coding protein_coding MGP_AJ_T0002980.1 MGP_AJ_G0002794.1 mouse_genomes_project 1 186479569 186514090 - Gm36388 antisense antisense MGP_AJ_T0012354.1 MGP_AJ_G0010449.1 mouse_genomes_project 1 181313947 181315270 - processed_pseudogene processed_pseudogene MGP_AJ_T0000611.1 MGP_AJ_G0000552.1 mouse_genomes_project 1 126460439 126462935 + TEC TEC MGP_AJ_T0002876.1 MGP_AJ_G0002711.1 mouse_genomes_project 1 128825970 128864144 + antisense antisense MGP_AJ_T0000451.1 MGP_AJ_G0000392.1 mouse_genomes_project 1 36656073 36657718 + TEC TEC MGP_AJ_T0000588.1 MGP_AJ_G0000529.1 mouse_genomes_project 1 119261775 119264896 + TEC TEC MGP_AJ_T0005714.1 MGP_AJ_G0004799.1 mouse_genomes_project 1 40954031 41006378 - Gm29040 lincRNA lincRNA MGP_AJ_T0021034.1 MGP_AJ_G0016230.1 mouse_genomes_project 1 84542023 84544813 + MGP_AJ_P0021034 protein_coding protein_coding MGP_AJ_T0021035.1 MGP_AJ_G0016230.1 mouse_genomes_project 1 84542027 84545031 + protein_coding processed_transcript MGP_AJ_T0021036.1 MGP_AJ_G0016230.1 mouse_genomes_project 1 84542093 84545331 + MGP_AJ_P0021036 protein_coding protein_coding MGP_AJ_T0021037.1 MGP_AJ_G0016230.1 mouse_genomes_project 1 84542192 84545298 + MGP_AJ_P0021037 protein_coding unknown_likely_coding MGP_AJ_T0019989.1 MGP_AJ_G0016038.1 mouse_genomes_project 1 56418781 56428152 + MGP_AJ_P0019989 Ndufb3 protein_coding protein_coding MGP_AJ_T0021699.1 MGP_AJ_G0016377.1 mouse_genomes_project 1 117786373 117793155 - MGP_AJ_P0021699 Inhbb protein_coding protein_coding MGP_AJ_T0021599.1 MGP_AJ_G0016356.1 mouse_genomes_project 1 105083942 105122364 - MGP_AJ_P0021599 Kdsr protein_coding protein_coding MGP_AJ_T0021600.1 MGP_AJ_G0016356.1 mouse_genomes_project 1 105110136 105122336 - Kdsr protein_coding retained_intron MGP_AJ_T0021601.1 MGP_AJ_G0016356.1 mouse_genomes_project 1 105119738 105122320 - Kdsr protein_coding retained_intron MGP_AJ_T0012370.1 MGP_AJ_G0010465.1 mouse_genomes_project 1 189905685 189906112 - processed_pseudogene processed_pseudogene MGP_AJ_T0020449.1 MGP_AJ_G0016125.1 mouse_genomes_project 1 72157941 72160784 - MGP_AJ_P0020449 Cxcr1 protein_coding protein_coding MGP_AJ_T0020450.1 MGP_AJ_G0016125.1 mouse_genomes_project 1 72157941 72159388 - MGP_AJ_P0020450 Cxcr1 protein_coding protein_coding MGP_AJ_T0024146.1 MGP_AJ_G0016911.1 mouse_genomes_project 1 189600542 189814986 - MGP_AJ_P0024146 Rps6kc1 protein_coding nonsense_mediated_decay MGP_AJ_T0024147.1 MGP_AJ_G0016911.1 mouse_genomes_project 1 189673211 189735207 - MGP_AJ_P0024147 Rps6kc1 protein_coding nonsense_mediated_decay MGP_AJ_T0024148.1 MGP_AJ_G0016911.1 mouse_genomes_project 1 189673211 189815009 - MGP_AJ_P0024148 Rps6kc1 protein_coding protein_coding MGP_AJ_T0024149.1 MGP_AJ_G0016911.1 mouse_genomes_project 1 189673211 189814977 - MGP_AJ_P0024149 Rps6kc1 protein_coding nonsense_mediated_decay MGP_AJ_T0024150.1 MGP_AJ_G0016911.1 mouse_genomes_project 1 189694959 189746840 - Rps6kc1 protein_coding retained_intron MGP_AJ_T0024151.1 MGP_AJ_G0016911.1 mouse_genomes_project 1 189697338 189814973 - Rps6kc1 protein_coding retained_intron MGP_AJ_T0024152.1 MGP_AJ_G0016911.1 mouse_genomes_project 1 189709499 189711075 - Rps6kc1 protein_coding retained_intron MGP_AJ_T0024153.1 MGP_AJ_G0016911.1 mouse_genomes_project 1 189774466 189802252 - Rps6kc1 protein_coding processed_transcript MGP_AJ_T0024154.1 MGP_AJ_G0016911.1 mouse_genomes_project 1 189787914 189815008 - MGP_AJ_P0024154 Rps6kc1 protein_coding protein_coding MGP_AJ_T0021521.1 MGP_AJ_G0016342.1 mouse_genomes_project 1 95896500 95953155 - MGP_AJ_P0021521 protein_coding protein_coding MGP_AJ_T0021522.1 MGP_AJ_G0016342.1 mouse_genomes_project 1 95934529 95953155 - MGP_AJ_P0021522 protein_coding protein_coding MGP_AJ_T0021523.1 MGP_AJ_G0016342.1 mouse_genomes_project 1 95934529 95952757 - MGP_AJ_P0021523 protein_coding protein_coding MGP_AJ_T0021524.1 MGP_AJ_G0016342.1 mouse_genomes_project 1 95937071 95952757 - MGP_AJ_P0021524 protein_coding protein_coding MGP_AJ_T0005897.1 MGP_AJ_G0004943.1 mouse_genomes_project 1 125210937 125215294 - 4930599A14Rik lincRNA lincRNA MGP_AJ_T0005898.1 MGP_AJ_G0004943.1 mouse_genomes_project 1 125213458 125215320 - 4930599A14Rik lincRNA lincRNA MGP_AJ_T0020915.1 MGP_AJ_G0016208.1 mouse_genomes_project 1 81227121 81384877 - MGP_AJ_P0020915 Sphkap protein_coding protein_coding MGP_AJ_T0020916.1 MGP_AJ_G0016208.1 mouse_genomes_project 1 81228420 81384684 - MGP_AJ_P0020916 Sphkap protein_coding unknown_likely_coding MGP_AJ_T0020917.1 MGP_AJ_G0016208.1 mouse_genomes_project 1 81228424 81252148 - MGP_AJ_P0020917 Sphkap protein_coding protein_coding MGP_AJ_T0020918.1 MGP_AJ_G0016208.1 mouse_genomes_project 1 81238109 81384842 - Sphkap protein_coding retained_intron MGP_AJ_T0020919.1 MGP_AJ_G0016208.1 mouse_genomes_project 1 81318210 81384816 - Sphkap protein_coding retained_intron MGP_AJ_T0020920.1 MGP_AJ_G0016208.1 mouse_genomes_project 1 81359897 81384842 - Sphkap protein_coding retained_intron MGP_AJ_T0021069.1 MGP_AJ_G0016241.1 mouse_genomes_project 1 85233761 85237402 + MGP_AJ_P0021069 Chrng protein_coding protein_coding MGP_AJ_T0021070.1 MGP_AJ_G0016241.1 mouse_genomes_project 1 85234911 85237401 + MGP_AJ_P0021070 Chrng protein_coding protein_coding MGP_AJ_T0021071.1 MGP_AJ_G0016241.1 mouse_genomes_project 1 85234912 85241791 + MGP_AJ_P0021071 Chrng protein_coding protein_coding MGP_AJ_T0021072.1 MGP_AJ_G0016241.1 mouse_genomes_project 1 85234986 85237401 + MGP_AJ_P0021072 Chrng protein_coding protein_coding MGP_AJ_T0021073.1 MGP_AJ_G0016241.1 mouse_genomes_project 1 85235175 85237701 + Chrng protein_coding retained_intron MGP_AJ_T0011916.1 MGP_AJ_G0010011.1 mouse_genomes_project 1 18948905 18949810 - processed_pseudogene processed_pseudogene MGP_AJ_T0000629.1 MGP_AJ_G0000570.1 mouse_genomes_project 1 131580931 131584038 - TEC TEC MGP_AJ_T0000630.1 MGP_AJ_G0000570.1 mouse_genomes_project 1 131583435 131584038 - TEC TEC MGP_AJ_T0019342.1 MGP_AJ_G0015915.1 mouse_genomes_project 1 34300810 34312696 - MGP_AJ_P0019342 Actr1b protein_coding protein_coding MGP_AJ_T0019343.1 MGP_AJ_G0015915.1 mouse_genomes_project 1 34303909 34304348 - Actr1b protein_coding retained_intron MGP_AJ_T0019344.1 MGP_AJ_G0015915.1 mouse_genomes_project 1 34304374 34312635 - Actr1b protein_coding retained_intron MGP_AJ_T0019345.1 MGP_AJ_G0015915.1 mouse_genomes_project 1 34304465 34312366 - MGP_AJ_P0019345 Actr1b protein_coding protein_coding MGP_AJ_T0019346.1 MGP_AJ_G0015915.1 mouse_genomes_project 1 34304486 34317451 - MGP_AJ_P0019346 Actr1b protein_coding protein_coding MGP_AJ_T0019347.1 MGP_AJ_G0015915.1 mouse_genomes_project 1 34305178 34309859 - Actr1b protein_coding retained_intron MGP_AJ_T0019348.1 MGP_AJ_G0015915.1 mouse_genomes_project 1 34309233 34312607 - Actr1b protein_coding processed_transcript MGP_AJ_T0017009.1 MGP_AJ_G0015080.1 mouse_genomes_project 1 87850496 87883891 - 4933400F21Rik processed_transcript antisense MGP_AJ_T0017010.1 MGP_AJ_G0015080.1 mouse_genomes_project 1 87877469 87883877 - 4933400F21Rik processed_transcript antisense MGP_AJ_T0017011.1 MGP_AJ_G0015080.1 mouse_genomes_project 1 87881067 87883871 - 4933400F21Rik processed_transcript retained_intron MGP_AJ_T0000484.1 MGP_AJ_G0000425.1 mouse_genomes_project 1 58521426 58522856 - TEC TEC MGP_AJ_T0019695.1 MGP_AJ_G0015986.1 mouse_genomes_project 1 49526910 49695097 - MGP_AJ_P0019695 Myo1b protein_coding protein_coding MGP_AJ_T0019696.1 MGP_AJ_G0015986.1 mouse_genomes_project 1 49527126 49694967 - MGP_AJ_P0019696 Myo1b protein_coding protein_coding MGP_AJ_T0019697.1 MGP_AJ_G0015986.1 mouse_genomes_project 1 49527133 49686338 - MGP_AJ_P0019697 Myo1b protein_coding protein_coding MGP_AJ_T0019698.1 MGP_AJ_G0015986.1 mouse_genomes_project 1 49527138 49694954 - MGP_AJ_P0019698 Myo1b protein_coding protein_coding MGP_AJ_T0019699.1 MGP_AJ_G0015986.1 mouse_genomes_project 1 49537758 49541885 - Myo1b protein_coding retained_intron MGP_AJ_T0019700.1 MGP_AJ_G0015986.1 mouse_genomes_project 1 49539936 49548306 - Myo1b protein_coding processed_transcript MGP_AJ_T0019701.1 MGP_AJ_G0015986.1 mouse_genomes_project 1 49540004 49544807 - Myo1b protein_coding retained_intron MGP_AJ_T0019702.1 MGP_AJ_G0015986.1 mouse_genomes_project 1 49544290 49553776 - Myo1b protein_coding processed_transcript MGP_AJ_T0019703.1 MGP_AJ_G0015986.1 mouse_genomes_project 1 49553732 49572568 - Myo1b protein_coding processed_transcript MGP_AJ_T0019704.1 MGP_AJ_G0015986.1 mouse_genomes_project 1 49557057 49559559 - Myo1b protein_coding retained_intron MGP_AJ_T0019705.1 MGP_AJ_G0015986.1 mouse_genomes_project 1 49574820 49675332 - MGP_AJ_P0019705 Myo1b protein_coding protein_coding MGP_AJ_T0019706.1 MGP_AJ_G0015986.1 mouse_genomes_project 1 49580013 49600926 - Myo1b protein_coding processed_transcript MGP_AJ_T0019707.1 MGP_AJ_G0015986.1 mouse_genomes_project 1 49591087 49694938 - Myo1b protein_coding retained_intron MGP_AJ_T0019708.1 MGP_AJ_G0015986.1 mouse_genomes_project 1 49614834 49631457 - Myo1b protein_coding processed_transcript MGP_AJ_T0019709.1 MGP_AJ_G0015986.1 mouse_genomes_project 1 49642982 49694947 - Myo1b protein_coding retained_intron MGP_AJ_T0020807.1 MGP_AJ_G0016182.1 mouse_genomes_project 1 76452768 76459300 - protein_coding processed_transcript MGP_AJ_T0021509.1 MGP_AJ_G0016336.1 mouse_genomes_project 1 92283734 92288699 + MGP_AJ_P0021509 Neu4 protein_coding protein_coding MGP_AJ_T0021510.1 MGP_AJ_G0016336.1 mouse_genomes_project 1 92283776 92291616 + MGP_AJ_P0021510 Neu4 protein_coding protein_coding MGP_AJ_T0021554.1 MGP_AJ_G0016346.1 mouse_genomes_project 1 96676160 96768683 + MGP_AJ_P0021554 Slco6d1 protein_coding protein_coding MGP_AJ_T0021555.1 MGP_AJ_G0016346.1 mouse_genomes_project 1 96676163 96776735 + MGP_AJ_P0021555 Slco6d1 protein_coding nonsense_mediated_decay MGP_AJ_T0021556.1 MGP_AJ_G0016346.1 mouse_genomes_project 1 96676190 96768550 + MGP_AJ_P0021556 Slco6d1 protein_coding protein_coding MGP_AJ_T0021557.1 MGP_AJ_G0016346.1 mouse_genomes_project 1 96758862 96768686 + Slco6d1 protein_coding processed_transcript MGP_AJ_T0002893.1 MGP_AJ_G0002722.1 mouse_genomes_project 1 132370344 132378501 + Gm15851 antisense antisense MGP_AJ_T0023277.1 MGP_AJ_G0016702.1 mouse_genomes_project 1 168431947 168437831 + MGP_AJ_P0023277 Ccdc190 protein_coding protein_coding MGP_AJ_T0023278.1 MGP_AJ_G0016702.1 mouse_genomes_project 1 168433236 168437591 + MGP_AJ_P0023278 Ccdc190 protein_coding protein_coding MGP_AJ_T0011929.1 MGP_AJ_G0010024.1 mouse_genomes_project 1 23881444 23882095 + processed_pseudogene processed_pseudogene MGP_AJ_T0005778.1 MGP_AJ_G0004848.1 mouse_genomes_project 1 69874931 69929765 - 4930556G22Rik lincRNA lincRNA MGP_AJ_T0022442.1 MGP_AJ_G0016541.1 mouse_genomes_project 1 138586264 138705568 - MGP_AJ_P0022442 protein_coding protein_coding MGP_AJ_T0022443.1 MGP_AJ_G0016541.1 mouse_genomes_project 1 138587182 138705699 - MGP_AJ_P0022443 protein_coding protein_coding MGP_AJ_T0022444.1 MGP_AJ_G0016541.1 mouse_genomes_project 1 138587185 138705608 - MGP_AJ_P0022444 protein_coding protein_coding MGP_AJ_T0022445.1 MGP_AJ_G0016541.1 mouse_genomes_project 1 138587186 138705699 - MGP_AJ_P0022445 protein_coding protein_coding MGP_AJ_T0022446.1 MGP_AJ_G0016541.1 mouse_genomes_project 1 138587189 138662228 - MGP_AJ_P0022446 protein_coding protein_coding MGP_AJ_T0022447.1 MGP_AJ_G0016541.1 mouse_genomes_project 1 138587206 138705610 - MGP_AJ_P0022447 protein_coding nonsense_mediated_decay MGP_AJ_T0022448.1 MGP_AJ_G0016541.1 mouse_genomes_project 1 138705421 138706052 - protein_coding retained_intron MGP_AJ_T0012159.1 MGP_AJ_G0010254.1 mouse_genomes_project 1 99060560 99061227 + processed_pseudogene processed_pseudogene MGP_AJ_T0023590.1 MGP_AJ_G0016773.1 mouse_genomes_project 1 171184963 171190691 - MGP_AJ_P0023590 Fcrl6 protein_coding protein_coding MGP_AJ_T0023591.1 MGP_AJ_G0016773.1 mouse_genomes_project 1 171185862 171190687 - Fcrl6 protein_coding retained_intron MGP_AJ_T0023592.1 MGP_AJ_G0016773.1 mouse_genomes_project 1 171186301 171190691 - Fcrl6 protein_coding retained_intron MGP_AJ_T0020234.1 MGP_AJ_G0016080.1 mouse_genomes_project 1 62585270 62620445 + MGP_AJ_P0020234 Ccnyl1 protein_coding protein_coding MGP_AJ_T0020235.1 MGP_AJ_G0016080.1 mouse_genomes_project 1 62585637 62618747 + MGP_AJ_P0020235 Ccnyl1 protein_coding protein_coding MGP_AJ_T0020236.1 MGP_AJ_G0016080.1 mouse_genomes_project 1 62585998 62606271 + MGP_AJ_P0020236 Ccnyl1 protein_coding protein_coding MGP_AJ_T0020237.1 MGP_AJ_G0016080.1 mouse_genomes_project 1 62586160 62620441 + MGP_AJ_P0020237 Ccnyl1 protein_coding protein_coding MGP_AJ_T0098876.1 MGP_AJ_G0036859.1 mouse_genomes_project 1 129848782 129851184 - Gm29488 sense_intronic sense_intronic MGP_AJ_T0002821.1 MGP_AJ_G0002671.1 mouse_genomes_project 1 61983165 61995275 + Gm13748 antisense antisense MGP_AJ_T0022809.1 MGP_AJ_G0016608.1 mouse_genomes_project 1 155152018 155191765 - MGP_AJ_P0022809 Fam20b protein_coding protein_coding MGP_AJ_T0022810.1 MGP_AJ_G0016608.1 mouse_genomes_project 1 155152057 155191779 - MGP_AJ_P0022810 Fam20b protein_coding protein_coding MGP_AJ_T0022811.1 MGP_AJ_G0016608.1 mouse_genomes_project 1 155159262 155171716 - Fam20b protein_coding retained_intron MGP_AJ_T0022812.1 MGP_AJ_G0016608.1 mouse_genomes_project 1 155171561 155176667 - Fam20b protein_coding processed_transcript MGP_AJ_T0022813.1 MGP_AJ_G0016608.1 mouse_genomes_project 1 155174498 155189651 - Fam20b protein_coding retained_intron MGP_AJ_T0024188.1 MGP_AJ_G0016918.1 mouse_genomes_project 1 190003217 190015736 + Batf3 protein_coding processed_transcript MGP_AJ_T0024189.1 MGP_AJ_G0016918.1 mouse_genomes_project 1 190003250 190016195 + Batf3 protein_coding processed_transcript MGP_AJ_T0024190.1 MGP_AJ_G0016918.1 mouse_genomes_project 1 190005038 190016193 + MGP_AJ_P0024190 Batf3 protein_coding protein_coding MGP_AJ_T0024191.1 MGP_AJ_G0016918.1 mouse_genomes_project 1 190005096 190015736 + Batf3 protein_coding processed_transcript MGP_AJ_T0024192.1 MGP_AJ_G0016918.1 mouse_genomes_project 1 190007171 190016159 + Batf3 protein_coding retained_intron MGP_AJ_T0011265.1 MGP_AJ_G0009387.1 mouse_genomes_project 1 194109663 194109761 - Gm27940 misc_RNA misc_RNA MGP_AJ_T0022701.1 MGP_AJ_G0016591.1 mouse_genomes_project 1 153607834 153627324 - MGP_AJ_P0022701 Mr1 protein_coding nonsense_mediated_decay MGP_AJ_T0022702.1 MGP_AJ_G0016591.1 mouse_genomes_project 1 153608431 153614576 - Mr1 protein_coding retained_intron MGP_AJ_T0022703.1 MGP_AJ_G0016591.1 mouse_genomes_project 1 153608435 153627303 - MGP_AJ_P0022703 Mr1 protein_coding protein_coding MGP_AJ_T0022704.1 MGP_AJ_G0016591.1 mouse_genomes_project 1 153609388 153627324 - MGP_AJ_P0022704 Mr1 protein_coding nonsense_mediated_decay MGP_AJ_T0022705.1 MGP_AJ_G0016591.1 mouse_genomes_project 1 153616341 153627334 - Mr1 protein_coding retained_intron MGP_AJ_T0002765.1 MGP_AJ_G0002626.1 mouse_genomes_project 1 15102948 15173744 - Gm28153 antisense antisense MGP_AJ_T0000532.1 MGP_AJ_G0000473.1 mouse_genomes_project 1 79475365 79477370 - TEC TEC MGP_AJ_T0102177.1 MGP_AJ_G0039920.1 mouse_genomes_project 1 105590318 105592413 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0021762.1 MGP_AJ_G0016393.1 mouse_genomes_project 1 119799304 119876499 + MGP_AJ_P0021762 Ccdc93 protein_coding protein_coding MGP_AJ_T0021763.1 MGP_AJ_G0016393.1 mouse_genomes_project 1 119799330 119817236 + Ccdc93 protein_coding retained_intron MGP_AJ_T0021764.1 MGP_AJ_G0016393.1 mouse_genomes_project 1 119799350 119817929 + Ccdc93 protein_coding processed_transcript MGP_AJ_T0021765.1 MGP_AJ_G0016393.1 mouse_genomes_project 1 119799363 119812199 + Ccdc93 protein_coding processed_transcript MGP_AJ_T0021766.1 MGP_AJ_G0016393.1 mouse_genomes_project 1 119799365 119869945 + MGP_AJ_P0021766 Ccdc93 protein_coding protein_coding MGP_AJ_T0021767.1 MGP_AJ_G0016393.1 mouse_genomes_project 1 119859581 119867839 + Ccdc93 protein_coding retained_intron MGP_AJ_T0005942.1 MGP_AJ_G0004981.1 mouse_genomes_project 1 152398659 152400724 + Gm29290 lincRNA lincRNA MGP_AJ_T0020246.1 MGP_AJ_G0016083.1 mouse_genomes_project 1 62908930 62928955 - MGP_AJ_P0020246 Akr1cl protein_coding protein_coding MGP_AJ_T0020247.1 MGP_AJ_G0016083.1 mouse_genomes_project 1 62908930 62928967 - MGP_AJ_P0020247 Akr1cl protein_coding protein_coding MGP_AJ_T0020248.1 MGP_AJ_G0016083.1 mouse_genomes_project 1 62910704 62912778 - Akr1cl protein_coding retained_intron MGP_AJ_T0020249.1 MGP_AJ_G0016083.1 mouse_genomes_project 1 62912302 62928894 - MGP_AJ_P0020249 Akr1cl protein_coding nonsense_mediated_decay MGP_AJ_T0020250.1 MGP_AJ_G0016083.1 mouse_genomes_project 1 62923897 62928940 - Akr1cl protein_coding processed_transcript MGP_AJ_T0020251.1 MGP_AJ_G0016083.1 mouse_genomes_project 1 62925739 62928956 - Akr1cl protein_coding retained_intron MGP_AJ_T0012190.1 MGP_AJ_G0010285.1 mouse_genomes_project 1 110190514 110191089 - processed_pseudogene processed_pseudogene MGP_AJ_T0009536.1 MGP_AJ_G0007658.1 mouse_genomes_project 1 136480059 136480146 + Mir181a-1 miRNA miRNA MGP_AJ_T0023315.1 MGP_AJ_G0016714.1 mouse_genomes_project 1 169422941 169435878 - MGP_AJ_P0023315 Dusp12 protein_coding nonsense_mediated_decay MGP_AJ_T0023316.1 MGP_AJ_G0016714.1 mouse_genomes_project 1 169423627 169435961 - MGP_AJ_P0023316 Dusp12 protein_coding protein_coding MGP_AJ_T0023317.1 MGP_AJ_G0016714.1 mouse_genomes_project 1 169423627 169435816 - MGP_AJ_P0023317 Dusp12 protein_coding nonsense_mediated_decay MGP_AJ_T0023318.1 MGP_AJ_G0016714.1 mouse_genomes_project 1 169423627 169435620 - MGP_AJ_P0023318 Dusp12 protein_coding protein_coding MGP_AJ_T0023319.1 MGP_AJ_G0016714.1 mouse_genomes_project 1 169423628 169435828 - MGP_AJ_P0023319 Dusp12 protein_coding nonsense_mediated_decay MGP_AJ_T0023320.1 MGP_AJ_G0016714.1 mouse_genomes_project 1 169423959 169435817 - MGP_AJ_P0023320 Dusp12 protein_coding nonsense_mediated_decay MGP_AJ_T0023321.1 MGP_AJ_G0016714.1 mouse_genomes_project 1 169430113 169435425 - MGP_AJ_P0023321 Dusp12 protein_coding protein_coding MGP_AJ_T0102197.1 MGP_AJ_G0039940.1 mouse_genomes_project 1 172732418 172747618 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0023643.1 MGP_AJ_G0016798.1 mouse_genomes_project 1 172785093 172787509 + MGP_AJ_P0023643 Olfr433 protein_coding protein_coding MGP_AJ_T0000705.1 MGP_AJ_G0000644.1 mouse_genomes_project 1 158693606 158695480 + TEC TEC MGP_AJ_T0000488.1 MGP_AJ_G0000429.1 mouse_genomes_project 1 59465727 59466009 + TEC TEC MGP_AJ_T0011243.1 MGP_AJ_G0009365.1 mouse_genomes_project 1 45516071 45516341 - Gm23829 misc_RNA misc_RNA MGP_AJ_T0023506.1 MGP_AJ_G0016756.1 mouse_genomes_project 1 170649610 170688895 + MGP_AJ_P0023506 Copa protein_coding protein_coding MGP_AJ_T0023507.1 MGP_AJ_G0016756.1 mouse_genomes_project 1 170649724 170660687 + Copa protein_coding retained_intron MGP_AJ_T0023508.1 MGP_AJ_G0016756.1 mouse_genomes_project 1 170649886 170677467 + MGP_AJ_P0023508 Copa protein_coding nonsense_mediated_decay MGP_AJ_T0023509.1 MGP_AJ_G0016756.1 mouse_genomes_project 1 170649912 170671376 + Copa protein_coding retained_intron MGP_AJ_T0023510.1 MGP_AJ_G0016756.1 mouse_genomes_project 1 170649913 170688900 + MGP_AJ_P0023510 Copa protein_coding protein_coding MGP_AJ_T0023511.1 MGP_AJ_G0016756.1 mouse_genomes_project 1 170662376 170668363 + Copa protein_coding processed_transcript MGP_AJ_T0023512.1 MGP_AJ_G0016756.1 mouse_genomes_project 1 170666871 170672907 + MGP_AJ_P0023512 Copa protein_coding nonsense_mediated_decay MGP_AJ_T0023513.1 MGP_AJ_G0016756.1 mouse_genomes_project 1 170678707 170682086 + Copa protein_coding retained_intron MGP_AJ_T0023514.1 MGP_AJ_G0016756.1 mouse_genomes_project 1 170680854 170688898 + Copa protein_coding retained_intron MGP_AJ_T0023515.1 MGP_AJ_G0016756.1 mouse_genomes_project 1 170684720 170685959 + Copa protein_coding retained_intron MGP_AJ_T0020455.1 MGP_AJ_G0016127.1 mouse_genomes_project 1 72245574 72246649 + MGP_AJ_P0020455 Gpbar1 protein_coding protein_coding MGP_AJ_T0002797.1 MGP_AJ_G0002653.1 mouse_genomes_project 1 41443023 41444958 - Gm29155 antisense antisense MGP_AJ_T0002798.1 MGP_AJ_G0002653.1 mouse_genomes_project 1 41444646 41444915 - Gm29155 antisense antisense MGP_AJ_T0099192.1 MGP_AJ_G0037158.1 mouse_genomes_project 1 115831591 115831755 + Gm24030 snRNA snRNA MGP_AJ_T0021512.1 MGP_AJ_G0016338.1 mouse_genomes_project 1 93551045 93572708 + MGP_AJ_P0021512 Fam174a protein_coding protein_coding MGP_AJ_T0021513.1 MGP_AJ_G0016338.1 mouse_genomes_project 1 93551050 93565372 + MGP_AJ_P0021513 Fam174a protein_coding protein_coding MGP_AJ_T0006042.1 MGP_AJ_G0005057.1 mouse_genomes_project 1 185039938 185087983 + Gm37134 lincRNA lincRNA MGP_AJ_T0023121.1 MGP_AJ_G0016666.1 mouse_genomes_project 1 162950565 162971948 - MGP_AJ_P0023121 Atp1b1 protein_coding protein_coding MGP_AJ_T0023122.1 MGP_AJ_G0016666.1 mouse_genomes_project 1 162954915 162957176 - Atp1b1 protein_coding processed_transcript MGP_AJ_T0023123.1 MGP_AJ_G0016666.1 mouse_genomes_project 1 162954915 162967299 - MGP_AJ_P0023123 Atp1b1 protein_coding protein_coding MGP_AJ_T0023124.1 MGP_AJ_G0016666.1 mouse_genomes_project 1 162966783 162971615 - Atp1b1 protein_coding retained_intron MGP_AJ_T0005955.1 MGP_AJ_G0004990.1 mouse_genomes_project 1 155446823 155528729 - Gm28694 lincRNA lincRNA MGP_AJ_T0022577.1 MGP_AJ_G0016564.1 mouse_genomes_project 1 149881234 149898691 - MGP_AJ_P0022577 Rnf2 protein_coding protein_coding MGP_AJ_T0022578.1 MGP_AJ_G0016564.1 mouse_genomes_project 1 149892121 149929426 - MGP_AJ_P0022578 Rnf2 protein_coding protein_coding MGP_AJ_T0022579.1 MGP_AJ_G0016564.1 mouse_genomes_project 1 149892122 149929566 - MGP_AJ_P0022579 Rnf2 protein_coding protein_coding MGP_AJ_T0022580.1 MGP_AJ_G0016564.1 mouse_genomes_project 1 149893842 149929448 - MGP_AJ_P0022580 Rnf2 protein_coding protein_coding MGP_AJ_T0022581.1 MGP_AJ_G0016564.1 mouse_genomes_project 1 149893874 149894754 - Rnf2 protein_coding retained_intron MGP_AJ_T0022582.1 MGP_AJ_G0016564.1 mouse_genomes_project 1 149894039 149896648 - Rnf2 protein_coding processed_transcript MGP_AJ_T0022583.1 MGP_AJ_G0016564.1 mouse_genomes_project 1 149899429 149929409 - MGP_AJ_P0022583 Rnf2 protein_coding protein_coding MGP_AJ_T0023482.1 MGP_AJ_G0016750.1 mouse_genomes_project 1 170409475 170450989 + MGP_AJ_P0023482 protein_coding unknown_likely_coding MGP_AJ_T0023483.1 MGP_AJ_G0016750.1 mouse_genomes_project 1 170409558 170438998 + protein_coding processed_transcript MGP_AJ_T0023484.1 MGP_AJ_G0016750.1 mouse_genomes_project 1 170410400 170424900 + MGP_AJ_P0023484 protein_coding protein_coding MGP_AJ_T0101927.1 MGP_AJ_G0039782.1 mouse_genomes_project 1 56495691 56498593 + transcribed_unprocessed_pseudogene processed_transcript MGP_AJ_T0101928.1 MGP_AJ_G0039782.1 mouse_genomes_project 1 56497706 56497836 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_AJ_T0100478.1 MGP_AJ_G0038444.1 mouse_genomes_project 1 159519501 159519584 + Gm22357 snoRNA snoRNA MGP_AJ_T0012306.1 MGP_AJ_G0010401.1 mouse_genomes_project 1 157900718 157900928 + processed_pseudogene processed_pseudogene MGP_AJ_T0012080.1 MGP_AJ_G0010175.1 mouse_genomes_project 1 62924292 62924945 + processed_pseudogene processed_pseudogene MGP_AJ_T0005770.1 MGP_AJ_G0004844.1 mouse_genomes_project 1 67390780 67394212 - Gm29113 lincRNA lincRNA MGP_AJ_T0002859.1 MGP_AJ_G0002701.1 mouse_genomes_project 1 91957319 91978250 + Gm10550 antisense antisense MGP_AJ_T0019319.1 MGP_AJ_G0015911.1 mouse_genomes_project 1 34137833 34145535 - MGP_AJ_P0019319 Ankrd39 protein_coding protein_coding MGP_AJ_T0022379.1 MGP_AJ_G0016527.1 mouse_genomes_project 1 135361199 135480500 - MGP_AJ_P0022379 Nr5a2 protein_coding protein_coding MGP_AJ_T0022380.1 MGP_AJ_G0016527.1 mouse_genomes_project 1 135362904 135468133 - MGP_AJ_P0022380 Nr5a2 protein_coding protein_coding MGP_AJ_T0022381.1 MGP_AJ_G0016527.1 mouse_genomes_project 1 135363942 135480432 - MGP_AJ_P0022381 Nr5a2 protein_coding protein_coding MGP_AJ_T0022382.1 MGP_AJ_G0016527.1 mouse_genomes_project 1 135364091 135472023 - MGP_AJ_P0022382 Nr5a2 protein_coding protein_coding MGP_AJ_T0022383.1 MGP_AJ_G0016527.1 mouse_genomes_project 1 135408848 135459168 - Nr5a2 protein_coding retained_intron MGP_AJ_T0022384.1 MGP_AJ_G0016527.1 mouse_genomes_project 1 135459569 135467744 - MGP_AJ_P0022384 Nr5a2 protein_coding protein_coding MGP_AJ_T0002947.1 MGP_AJ_G0002766.1 mouse_genomes_project 1 168714927 168717945 + antisense antisense MGP_AJ_T0002948.1 MGP_AJ_G0002766.1 mouse_genomes_project 1 168714927 168715626 + antisense antisense MGP_AJ_T0012035.1 MGP_AJ_G0010130.1 mouse_genomes_project 1 52937013 52941483 + processed_pseudogene processed_pseudogene MGP_AJ_T0005753.1 MGP_AJ_G0004831.1 mouse_genomes_project 1 60720626 60731638 - Gm4208 lincRNA lincRNA MGP_AJ_T0002776.1 MGP_AJ_G0002636.1 mouse_genomes_project 1 34125848 34126552 - Gm38033 antisense antisense MGP_AJ_T0022874.1 MGP_AJ_G0016618.1 mouse_genomes_project 1 157702016 157719814 + MGP_AJ_P0022874 Rfwd2 protein_coding nonsense_mediated_decay MGP_AJ_T0022875.1 MGP_AJ_G0016618.1 mouse_genomes_project 1 157702018 157819284 + MGP_AJ_P0022875 Rfwd2 protein_coding protein_coding MGP_AJ_T0022876.1 MGP_AJ_G0016618.1 mouse_genomes_project 1 157702340 157758700 + MGP_AJ_P0022876 Rfwd2 protein_coding protein_coding MGP_AJ_T0022877.1 MGP_AJ_G0016618.1 mouse_genomes_project 1 157702382 157719837 + MGP_AJ_P0022877 Rfwd2 protein_coding nonsense_mediated_decay MGP_AJ_T0022878.1 MGP_AJ_G0016618.1 mouse_genomes_project 1 157709252 157736679 + Rfwd2 protein_coding retained_intron MGP_AJ_T0022879.1 MGP_AJ_G0016618.1 mouse_genomes_project 1 157718942 157777550 + MGP_AJ_P0022879 Rfwd2 protein_coding protein_coding MGP_AJ_T0022880.1 MGP_AJ_G0016618.1 mouse_genomes_project 1 157728353 157779441 + MGP_AJ_P0022880 Rfwd2 protein_coding protein_coding MGP_AJ_T0022881.1 MGP_AJ_G0016618.1 mouse_genomes_project 1 157736426 157743422 + Rfwd2 protein_coding retained_intron MGP_AJ_T0022882.1 MGP_AJ_G0016618.1 mouse_genomes_project 1 157777588 157780037 + Rfwd2 protein_coding retained_intron MGP_AJ_T0022883.1 MGP_AJ_G0016618.1 mouse_genomes_project 1 157777599 157796675 + MGP_AJ_P0022883 Rfwd2 protein_coding protein_coding MGP_AJ_T0022884.1 MGP_AJ_G0016618.1 mouse_genomes_project 1 157779386 157796754 + Rfwd2 protein_coding retained_intron MGP_AJ_T0022885.1 MGP_AJ_G0016618.1 mouse_genomes_project 1 157792641 157797602 + Rfwd2 protein_coding retained_intron MGP_AJ_T0022886.1 MGP_AJ_G0016618.1 mouse_genomes_project 1 157813999 157816744 + Rfwd2 protein_coding retained_intron MGP_AJ_T0023038.1 MGP_AJ_G0016645.1 mouse_genomes_project 1 161308349 161328224 - MGP_AJ_P0023038 Fmo4 protein_coding protein_coding MGP_AJ_T0023039.1 MGP_AJ_G0016645.1 mouse_genomes_project 1 161309044 161327101 - MGP_AJ_P0023039 Fmo4 protein_coding protein_coding MGP_AJ_T0023040.1 MGP_AJ_G0016645.1 mouse_genomes_project 1 161317514 161328224 - Fmo4 protein_coding retained_intron MGP_AJ_T0023041.1 MGP_AJ_G0016645.1 mouse_genomes_project 1 161318271 161323136 - Fmo4 protein_coding retained_intron MGP_AJ_T0023042.1 MGP_AJ_G0016645.1 mouse_genomes_project 1 161322175 161328479 - MGP_AJ_P0023042 Fmo4 protein_coding protein_coding MGP_AJ_T0023043.1 MGP_AJ_G0016645.1 mouse_genomes_project 1 161322946 161328525 - MGP_AJ_P0023043 Fmo4 protein_coding protein_coding MGP_AJ_T0023802.1 MGP_AJ_G0016844.1 mouse_genomes_project 1 178839537 179039603 + MGP_AJ_P0023802 Cdc42bpa protein_coding protein_coding MGP_AJ_T0023803.1 MGP_AJ_G0016844.1 mouse_genomes_project 1 178839650 179042068 + MGP_AJ_P0023803 Cdc42bpa protein_coding protein_coding MGP_AJ_T0023804.1 MGP_AJ_G0016844.1 mouse_genomes_project 1 178839825 178987886 + MGP_AJ_P0023804 Cdc42bpa protein_coding nonsense_mediated_decay MGP_AJ_T0023805.1 MGP_AJ_G0016844.1 mouse_genomes_project 1 178840185 179038616 + MGP_AJ_P0023805 Cdc42bpa protein_coding protein_coding MGP_AJ_T0023806.1 MGP_AJ_G0016844.1 mouse_genomes_project 1 178840185 179038616 + MGP_AJ_P0023806 Cdc42bpa protein_coding protein_coding MGP_AJ_T0023807.1 MGP_AJ_G0016844.1 mouse_genomes_project 1 178854850 178918087 + Cdc42bpa protein_coding processed_transcript MGP_AJ_T0023808.1 MGP_AJ_G0016844.1 mouse_genomes_project 1 178869663 178914804 + Cdc42bpa protein_coding retained_intron MGP_AJ_T0023809.1 MGP_AJ_G0016844.1 mouse_genomes_project 1 178960478 178970832 + Cdc42bpa protein_coding retained_intron MGP_AJ_T0023810.1 MGP_AJ_G0016844.1 mouse_genomes_project 1 178977130 179039036 + MGP_AJ_P0023810 Cdc42bpa protein_coding protein_coding MGP_AJ_T0023811.1 MGP_AJ_G0016844.1 mouse_genomes_project 1 178983003 178994944 + Cdc42bpa protein_coding retained_intron MGP_AJ_T0023812.1 MGP_AJ_G0016844.1 mouse_genomes_project 1 178984986 178988161 + Cdc42bpa protein_coding retained_intron MGP_AJ_T0023813.1 MGP_AJ_G0016844.1 mouse_genomes_project 1 178985186 179042067 + MGP_AJ_P0023813 Cdc42bpa protein_coding protein_coding MGP_AJ_T0023814.1 MGP_AJ_G0016844.1 mouse_genomes_project 1 178985259 179025678 + MGP_AJ_P0023814 Cdc42bpa protein_coding protein_coding MGP_AJ_T0023815.1 MGP_AJ_G0016844.1 mouse_genomes_project 1 178987333 179013451 + MGP_AJ_P0023815 Cdc42bpa protein_coding protein_coding MGP_AJ_T0023816.1 MGP_AJ_G0016844.1 mouse_genomes_project 1 178987351 178992291 + Cdc42bpa protein_coding retained_intron MGP_AJ_T0023817.1 MGP_AJ_G0016844.1 mouse_genomes_project 1 179000122 179015279 + Cdc42bpa protein_coding processed_transcript MGP_AJ_T0023818.1 MGP_AJ_G0016844.1 mouse_genomes_project 1 179037456 179038744 + Cdc42bpa protein_coding retained_intron MGP_AJ_T0100457.1 MGP_AJ_G0038423.1 mouse_genomes_project 1 116821941 116822072 - Gm26080 snoRNA snoRNA MGP_AJ_T0011904.1 MGP_AJ_G0009999.1 mouse_genomes_project 1 16083121 16084030 + processed_pseudogene processed_pseudogene MGP_AJ_T0000596.1 MGP_AJ_G0000537.1 mouse_genomes_project 1 121768603 121770664 - TEC TEC MGP_AJ_T0102172.1 MGP_AJ_G0039915.1 mouse_genomes_project 1 101518538 101608562 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0020921.1 MGP_AJ_G0016209.1 mouse_genomes_project 1 82004143 82245508 - MGP_AJ_P0020921 Pid1 protein_coding protein_coding MGP_AJ_T0020922.1 MGP_AJ_G0016209.1 mouse_genomes_project 1 82005078 82298134 - MGP_AJ_P0020922 Pid1 protein_coding protein_coding MGP_AJ_T0020923.1 MGP_AJ_G0016209.1 mouse_genomes_project 1 82005773 82021073 - Pid1 protein_coding processed_transcript MGP_AJ_T0020924.1 MGP_AJ_G0016209.1 mouse_genomes_project 1 82049462 82245286 - MGP_AJ_P0020924 Pid1 protein_coding protein_coding MGP_AJ_T0020925.1 MGP_AJ_G0016209.1 mouse_genomes_project 1 82076770 82326635 - MGP_AJ_P0020925 Pid1 protein_coding protein_coding MGP_AJ_T0020926.1 MGP_AJ_G0016209.1 mouse_genomes_project 1 82084306 82306795 - MGP_AJ_P0020926 Pid1 protein_coding protein_coding MGP_AJ_T0020927.1 MGP_AJ_G0016209.1 mouse_genomes_project 1 82123276 82245474 - MGP_AJ_P0020927 Pid1 protein_coding protein_coding MGP_AJ_T0020928.1 MGP_AJ_G0016209.1 mouse_genomes_project 1 82244055 82245486 - Pid1 protein_coding retained_intron MGP_AJ_T0000797.1 MGP_AJ_G0000733.1 mouse_genomes_project 1 192112971 192115192 - TEC TEC MGP_AJ_T0100483.1 MGP_AJ_G0038449.1 mouse_genomes_project 1 159521042 159521119 + Snord80 snoRNA snoRNA MGP_AJ_T0002882.1 MGP_AJ_G0002715.1 mouse_genomes_project 1 129708618 129709665 + Gm28914 antisense antisense MGP_AJ_T0005904.1 MGP_AJ_G0004949.1 mouse_genomes_project 1 130717565 130723264 - Gm29630 lincRNA lincRNA MGP_AJ_T0000561.1 MGP_AJ_G0000502.1 mouse_genomes_project 1 89035634 89037493 - TEC TEC MGP_AJ_T0000667.1 MGP_AJ_G0000606.1 mouse_genomes_project 1 144864572 144869281 - TEC TEC MGP_AJ_T0023460.1 MGP_AJ_G0016742.1 mouse_genomes_project 1 169995564 169996059 + Tstd1 protein_coding processed_transcript MGP_AJ_T0023461.1 MGP_AJ_G0016742.1 mouse_genomes_project 1 169995725 169997045 + MGP_AJ_P0023461 Tstd1 protein_coding protein_coding MGP_AJ_T0023462.1 MGP_AJ_G0016742.1 mouse_genomes_project 1 169996411 169997044 + Tstd1 protein_coding retained_intron MGP_AJ_T0021561.1 MGP_AJ_G0016348.1 mouse_genomes_project 1 103138987 103366448 + MGP_AJ_P0021561 Cdh20 protein_coding protein_coding MGP_AJ_T0000677.1 MGP_AJ_G0000616.1 mouse_genomes_project 1 149866850 149869283 + TEC TEC MGP_AJ_T0023480.1 MGP_AJ_G0016749.1 mouse_genomes_project 1 170342641 170379127 + MGP_AJ_P0023480 Slamf1 protein_coding protein_coding MGP_AJ_T0023481.1 MGP_AJ_G0016749.1 mouse_genomes_project 1 170342669 170373779 + Slamf1 protein_coding retained_intron MGP_AJ_T0023544.1 MGP_AJ_G0016763.1 mouse_genomes_project 1 170838485 170864747 - MGP_AJ_P0023544 Atp1a2 protein_coding protein_coding MGP_AJ_T0023545.1 MGP_AJ_G0016763.1 mouse_genomes_project 1 170841286 170864747 - Atp1a2 protein_coding retained_intron MGP_AJ_T0023546.1 MGP_AJ_G0016763.1 mouse_genomes_project 1 170842640 170843175 - Atp1a2 protein_coding retained_intron MGP_AJ_T0023547.1 MGP_AJ_G0016763.1 mouse_genomes_project 1 170844794 170864747 - MGP_AJ_P0023547 Atp1a2 protein_coding protein_coding MGP_AJ_T0023548.1 MGP_AJ_G0016763.1 mouse_genomes_project 1 170850948 170864747 - Atp1a2 protein_coding retained_intron MGP_AJ_T0000803.1 MGP_AJ_G0000739.1 mouse_genomes_project 1 193550680 193554244 + TEC TEC MGP_AJ_T0011881.1 MGP_AJ_G0009976.1 mouse_genomes_project 1 7118954 7119311 - processed_pseudogene processed_pseudogene MGP_AJ_T0000640.1 MGP_AJ_G0000580.1 mouse_genomes_project 1 134564074 134566327 + TEC TEC MGP_AJ_T0020933.1 MGP_AJ_G0016211.1 mouse_genomes_project 1 82676043 82794182 - MGP_AJ_P0020933 Trip12 protein_coding unknown_likely_coding MGP_AJ_T0020934.1 MGP_AJ_G0016211.1 mouse_genomes_project 1 82676044 82795335 - MGP_AJ_P0020934 Trip12 protein_coding protein_coding MGP_AJ_T0020935.1 MGP_AJ_G0016211.1 mouse_genomes_project 1 82676044 82794123 - MGP_AJ_P0020935 Trip12 protein_coding protein_coding MGP_AJ_T0020936.1 MGP_AJ_G0016211.1 mouse_genomes_project 1 82679119 82794107 - MGP_AJ_P0020936 Trip12 protein_coding protein_coding MGP_AJ_T0020937.1 MGP_AJ_G0016211.1 mouse_genomes_project 1 82679119 82704138 - MGP_AJ_P0020937 Trip12 protein_coding protein_coding MGP_AJ_T0020938.1 MGP_AJ_G0016211.1 mouse_genomes_project 1 82679432 82686557 - MGP_AJ_P0020938 Trip12 protein_coding nonsense_mediated_decay MGP_AJ_T0020939.1 MGP_AJ_G0016211.1 mouse_genomes_project 1 82681065 82683730 - Trip12 protein_coding retained_intron MGP_AJ_T0020940.1 MGP_AJ_G0016211.1 mouse_genomes_project 1 82683460 82686628 - Trip12 protein_coding retained_intron MGP_AJ_T0020941.1 MGP_AJ_G0016211.1 mouse_genomes_project 1 82699580 82709265 - MGP_AJ_P0020941 Trip12 protein_coding nonsense_mediated_decay MGP_AJ_T0020942.1 MGP_AJ_G0016211.1 mouse_genomes_project 1 82704018 82705404 - Trip12 protein_coding retained_intron MGP_AJ_T0020943.1 MGP_AJ_G0016211.1 mouse_genomes_project 1 82704079 82794130 - MGP_AJ_P0020943 Trip12 protein_coding nonsense_mediated_decay MGP_AJ_T0020944.1 MGP_AJ_G0016211.1 mouse_genomes_project 1 82709263 82794123 - MGP_AJ_P0020944 Trip12 protein_coding protein_coding MGP_AJ_T0020945.1 MGP_AJ_G0016211.1 mouse_genomes_project 1 82711509 82715045 - Trip12 protein_coding retained_intron MGP_AJ_T0020946.1 MGP_AJ_G0016211.1 mouse_genomes_project 1 82720820 82721585 - Trip12 protein_coding retained_intron MGP_AJ_T0020947.1 MGP_AJ_G0016211.1 mouse_genomes_project 1 82720856 82748229 - MGP_AJ_P0020947 Trip12 protein_coding protein_coding MGP_AJ_T0020948.1 MGP_AJ_G0016211.1 mouse_genomes_project 1 82737216 82739027 - Trip12 protein_coding retained_intron MGP_AJ_T0020949.1 MGP_AJ_G0016211.1 mouse_genomes_project 1 82737682 82794120 - MGP_AJ_P0020949 Trip12 protein_coding protein_coding MGP_AJ_T0020950.1 MGP_AJ_G0016211.1 mouse_genomes_project 1 82748664 82795085 - MGP_AJ_P0020950 Trip12 protein_coding protein_coding MGP_AJ_T0020951.1 MGP_AJ_G0016211.1 mouse_genomes_project 1 82748908 82793533 - MGP_AJ_P0020951 Trip12 protein_coding protein_coding MGP_AJ_T0000354.1 MGP_AJ_G0000298.1 mouse_genomes_project 1 1889994 1891323 - TEC TEC MGP_AJ_T0102162.1 MGP_AJ_G0039905.1 mouse_genomes_project 1 86266329 86266544 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0012059.1 MGP_AJ_G0010154.1 mouse_genomes_project 1 58816880 58817405 + processed_pseudogene processed_pseudogene MGP_AJ_T0002992.1 MGP_AJ_G0002804.1 mouse_genomes_project 1 190797446 190812271 - 1700034H15Rik antisense antisense MGP_AJ_T0002993.1 MGP_AJ_G0002804.1 mouse_genomes_project 1 190801548 190810510 - 1700034H15Rik antisense antisense MGP_AJ_T0002994.1 MGP_AJ_G0002804.1 mouse_genomes_project 1 190801550 190810637 - 1700034H15Rik antisense antisense MGP_AJ_T0002995.1 MGP_AJ_G0002804.1 mouse_genomes_project 1 190801739 190813104 - 1700034H15Rik antisense antisense MGP_AJ_T0002996.1 MGP_AJ_G0002804.1 mouse_genomes_project 1 190805421 190818887 - 1700034H15Rik antisense antisense MGP_AJ_T0002997.1 MGP_AJ_G0002804.1 mouse_genomes_project 1 190811354 190818895 - 1700034H15Rik antisense antisense MGP_AJ_T0000591.1 MGP_AJ_G0000532.1 mouse_genomes_project 1 120061124 120061873 + TEC TEC MGP_AJ_T0009511.1 MGP_AJ_G0007633.1 mouse_genomes_project 1 82645856 82645933 + Mir5126 miRNA miRNA MGP_AJ_T0000593.1 MGP_AJ_G0000534.1 mouse_genomes_project 1 121232600 121234440 + TEC TEC MGP_AJ_T0099203.1 MGP_AJ_G0037169.1 mouse_genomes_project 1 132742946 132743053 - Gm24517 snRNA snRNA MGP_AJ_T0012042.1 MGP_AJ_G0010137.1 mouse_genomes_project 1 55382442 55385196 - processed_pseudogene processed_pseudogene MGP_AJ_T0005874.1 MGP_AJ_G0004926.1 mouse_genomes_project 1 117676358 117697829 - Gm29456 lincRNA lincRNA MGP_AJ_T0022140.1 MGP_AJ_G0016476.1 mouse_genomes_project 1 132159745 132261987 - MGP_AJ_P0022140 Atp2b4 protein_coding protein_coding MGP_AJ_T0022141.1 MGP_AJ_G0016476.1 mouse_genomes_project 1 132161927 132162132 - MGP_AJ_P0022141 Atp2b4 protein_coding protein_coding MGP_AJ_T0022142.1 MGP_AJ_G0016476.1 mouse_genomes_project 1 132162905 132214187 - MGP_AJ_P0022142 Atp2b4 protein_coding protein_coding MGP_AJ_T0022143.1 MGP_AJ_G0016476.1 mouse_genomes_project 1 132162905 132214187 - MGP_AJ_P0022143 Atp2b4 protein_coding protein_coding MGP_AJ_T0022144.1 MGP_AJ_G0016476.1 mouse_genomes_project 1 132166542 132214121 - MGP_AJ_P0022144 Atp2b4 protein_coding protein_coding MGP_AJ_T0022145.1 MGP_AJ_G0016476.1 mouse_genomes_project 1 132174289 132213721 - MGP_AJ_P0022145 Atp2b4 protein_coding protein_coding MGP_AJ_T0022146.1 MGP_AJ_G0016476.1 mouse_genomes_project 1 132176631 132178238 - Atp2b4 protein_coding retained_intron MGP_AJ_T0022147.1 MGP_AJ_G0016476.1 mouse_genomes_project 1 132214139 132261982 - Atp2b4 protein_coding processed_transcript MGP_AJ_T0012241.1 MGP_AJ_G0010336.1 mouse_genomes_project 1 131988212 131989004 + processed_pseudogene processed_pseudogene MGP_AJ_T0019842.1 MGP_AJ_G0016011.1 mouse_genomes_project 1 52788661 52832766 - MGP_AJ_P0019842 Sf3b1 protein_coding protein_coding MGP_AJ_T0019843.1 MGP_AJ_G0016011.1 mouse_genomes_project 1 52788665 52794608 - Sf3b1 protein_coding retained_intron MGP_AJ_T0019844.1 MGP_AJ_G0016011.1 mouse_genomes_project 1 52792445 52796034 - Sf3b1 protein_coding retained_intron MGP_AJ_T0019845.1 MGP_AJ_G0016011.1 mouse_genomes_project 1 52807416 52832749 - Sf3b1 protein_coding retained_intron MGP_AJ_T0019846.1 MGP_AJ_G0016011.1 mouse_genomes_project 1 52811930 52819050 - Sf3b1 protein_coding retained_intron MGP_AJ_T0019847.1 MGP_AJ_G0016011.1 mouse_genomes_project 1 52816108 52832679 - MGP_AJ_P0019847 Sf3b1 protein_coding nonsense_mediated_decay MGP_AJ_T0019848.1 MGP_AJ_G0016011.1 mouse_genomes_project 1 52819657 52832658 - Sf3b1 protein_coding processed_transcript MGP_AJ_T0019849.1 MGP_AJ_G0016011.1 mouse_genomes_project 1 52819787 52820786 - Sf3b1 protein_coding retained_intron MGP_AJ_T0099146.1 MGP_AJ_G0037112.1 mouse_genomes_project 1 7151122 7151227 - Gm22607 snRNA snRNA MGP_AJ_T0000347.1 MGP_AJ_G0000291.1 mouse_genomes_project 1 459880 462113 - TEC TEC MGP_AJ_T0023923.1 MGP_AJ_G0016866.1 mouse_genomes_project 1 180652692 180670292 + protein_coding retained_intron MGP_AJ_T0023924.1 MGP_AJ_G0016866.1 mouse_genomes_project 1 180654740 180686432 + MGP_AJ_P0023924 protein_coding protein_coding MGP_AJ_T0023925.1 MGP_AJ_G0016866.1 mouse_genomes_project 1 180656444 180661779 + protein_coding processed_transcript MGP_AJ_T0020839.1 MGP_AJ_G0016191.1 mouse_genomes_project 1 77742128 77805114 - MGP_AJ_P0020839 Serpine2 protein_coding protein_coding MGP_AJ_T0020840.1 MGP_AJ_G0016191.1 mouse_genomes_project 1 77744726 77769130 - MGP_AJ_P0020840 Serpine2 protein_coding protein_coding MGP_AJ_T0020841.1 MGP_AJ_G0016191.1 mouse_genomes_project 1 77750935 77807601 - MGP_AJ_P0020841 Serpine2 protein_coding protein_coding MGP_AJ_T0020842.1 MGP_AJ_G0016191.1 mouse_genomes_project 1 77762921 77805114 - Serpine2 protein_coding retained_intron MGP_AJ_T0020843.1 MGP_AJ_G0016191.1 mouse_genomes_project 1 77764725 77768112 - Serpine2 protein_coding retained_intron MGP_AJ_T0020844.1 MGP_AJ_G0016191.1 mouse_genomes_project 1 77803915 77805053 - Serpine2 protein_coding retained_intron MGP_AJ_T0019372.1 MGP_AJ_G0015919.1 mouse_genomes_project 1 34828875 34866662 + MGP_AJ_P0019372 Cnga3 protein_coding protein_coding MGP_AJ_T0019373.1 MGP_AJ_G0015919.1 mouse_genomes_project 1 34833785 34893628 + MGP_AJ_P0019373 Cnga3 protein_coding protein_coding MGP_AJ_T0019374.1 MGP_AJ_G0015919.1 mouse_genomes_project 1 34833785 34893628 + MGP_AJ_P0019374 Cnga3 protein_coding protein_coding MGP_AJ_T0019375.1 MGP_AJ_G0015919.1 mouse_genomes_project 1 34834606 34894857 + MGP_AJ_P0019375 Cnga3 protein_coding protein_coding MGP_AJ_T0012109.1 MGP_AJ_G0010204.1 mouse_genomes_project 1 76740108 76741771 - processed_pseudogene processed_pseudogene MGP_AJ_T0020066.1 MGP_AJ_G0016052.1 mouse_genomes_project 1 57590744 57598440 + Nop58 protein_coding processed_transcript MGP_AJ_T0020067.1 MGP_AJ_G0016052.1 mouse_genomes_project 1 57590750 57617309 + MGP_AJ_P0020067 Nop58 protein_coding protein_coding MGP_AJ_T0020068.1 MGP_AJ_G0016052.1 mouse_genomes_project 1 57590758 57601876 + MGP_AJ_P0020068 Nop58 protein_coding protein_coding MGP_AJ_T0020069.1 MGP_AJ_G0016052.1 mouse_genomes_project 1 57590776 57598462 + Nop58 protein_coding retained_intron MGP_AJ_T0020070.1 MGP_AJ_G0016052.1 mouse_genomes_project 1 57590779 57596763 + Nop58 protein_coding retained_intron MGP_AJ_T0020071.1 MGP_AJ_G0016052.1 mouse_genomes_project 1 57590782 57624832 + MGP_AJ_P0020071 Nop58 protein_coding protein_coding MGP_AJ_T0020072.1 MGP_AJ_G0016052.1 mouse_genomes_project 1 57590794 57601851 + MGP_AJ_P0020072 Nop58 protein_coding protein_coding MGP_AJ_T0020073.1 MGP_AJ_G0016052.1 mouse_genomes_project 1 57590827 57604221 + MGP_AJ_P0020073 Nop58 protein_coding nonsense_mediated_decay MGP_AJ_T0020074.1 MGP_AJ_G0016052.1 mouse_genomes_project 1 57595952 57604185 + Nop58 protein_coding retained_intron MGP_AJ_T0020075.1 MGP_AJ_G0016052.1 mouse_genomes_project 1 57598217 57610008 + Nop58 protein_coding retained_intron MGP_AJ_T0020076.1 MGP_AJ_G0016052.1 mouse_genomes_project 1 57601825 57609960 + MGP_AJ_P0020076 Nop58 protein_coding nonsense_mediated_decay MGP_AJ_T0020077.1 MGP_AJ_G0016052.1 mouse_genomes_project 1 57604214 57612863 + MGP_AJ_P0020077 Nop58 protein_coding nonsense_mediated_decay MGP_AJ_T0020078.1 MGP_AJ_G0016052.1 mouse_genomes_project 1 57609957 57614898 + MGP_AJ_P0020078 Nop58 protein_coding nonsense_mediated_decay MGP_AJ_T0020079.1 MGP_AJ_G0016052.1 mouse_genomes_project 1 57609996 57617078 + MGP_AJ_P0020079 Nop58 protein_coding protein_coding MGP_AJ_T0020080.1 MGP_AJ_G0016052.1 mouse_genomes_project 1 57610507 57617079 + MGP_AJ_P0020080 Nop58 protein_coding protein_coding MGP_AJ_T0012099.1 MGP_AJ_G0010194.1 mouse_genomes_project 1 69895259 69895710 + processed_pseudogene processed_pseudogene MGP_AJ_T0012034.1 MGP_AJ_G0010129.1 mouse_genomes_project 1 52930778 52931572 - processed_pseudogene processed_pseudogene MGP_AJ_T0002924.1 MGP_AJ_G0002749.1 mouse_genomes_project 1 159514055 159514923 + Gm37362 antisense antisense MGP_AJ_T0021749.1 MGP_AJ_G0016390.1 mouse_genomes_project 1 118860744 118891153 - MGP_AJ_P0021749 Marco protein_coding protein_coding MGP_AJ_T0021750.1 MGP_AJ_G0016390.1 mouse_genomes_project 1 118877049 118890885 - MGP_AJ_P0021750 Marco protein_coding protein_coding MGP_AJ_T0000626.1 MGP_AJ_G0000567.1 mouse_genomes_project 1 130372736 130373243 - TEC TEC MGP_AJ_T0005767.1 MGP_AJ_G0004841.1 mouse_genomes_project 1 65694993 65708155 + Gm15669 lincRNA lincRNA MGP_AJ_T0020562.1 MGP_AJ_G0016143.1 mouse_genomes_project 1 72699082 72723356 + MGP_AJ_P0020562 Cyp27a1 protein_coding protein_coding MGP_AJ_T0020563.1 MGP_AJ_G0016143.1 mouse_genomes_project 1 72720814 72722180 + Cyp27a1 protein_coding retained_intron MGP_AJ_T0020564.1 MGP_AJ_G0016143.1 mouse_genomes_project 1 72722272 72723287 + Cyp27a1 protein_coding retained_intron MGP_AJ_T0012111.1 MGP_AJ_G0010206.1 mouse_genomes_project 1 77873131 77875357 - processed_pseudogene processed_pseudogene MGP_AJ_T0020424.1 MGP_AJ_G0016121.1 mouse_genomes_project 1 70984009 70984845 - MGP_AJ_P0020424 Tnp1 protein_coding protein_coding MGP_AJ_T0020715.1 MGP_AJ_G0016169.1 mouse_genomes_project 1 73297915 73355415 + MGP_AJ_P0020715 Speg protein_coding protein_coding MGP_AJ_T0020716.1 MGP_AJ_G0016169.1 mouse_genomes_project 1 73304726 73311597 + MGP_AJ_P0020716 Speg protein_coding protein_coding MGP_AJ_T0020717.1 MGP_AJ_G0016169.1 mouse_genomes_project 1 73304726 73327816 + MGP_AJ_P0020717 Speg protein_coding protein_coding MGP_AJ_T0020718.1 MGP_AJ_G0016169.1 mouse_genomes_project 1 73304738 73305996 + Speg protein_coding retained_intron MGP_AJ_T0020719.1 MGP_AJ_G0016169.1 mouse_genomes_project 1 73304750 73311147 + MGP_AJ_P0020719 Speg protein_coding nonsense_mediated_decay MGP_AJ_T0020720.1 MGP_AJ_G0016169.1 mouse_genomes_project 1 73306180 73308199 + Speg protein_coding processed_transcript MGP_AJ_T0020721.1 MGP_AJ_G0016169.1 mouse_genomes_project 1 73307923 73311200 + Speg protein_coding retained_intron MGP_AJ_T0020722.1 MGP_AJ_G0016169.1 mouse_genomes_project 1 73308051 73315175 + MGP_AJ_P0020722 Speg protein_coding nonsense_mediated_decay MGP_AJ_T0020723.1 MGP_AJ_G0016169.1 mouse_genomes_project 1 73308735 73312356 + Speg protein_coding processed_transcript MGP_AJ_T0020724.1 MGP_AJ_G0016169.1 mouse_genomes_project 1 73308833 73355398 + MGP_AJ_P0020724 Speg protein_coding protein_coding MGP_AJ_T0020725.1 MGP_AJ_G0016169.1 mouse_genomes_project 1 73323341 73327243 + MGP_AJ_P0020725 Speg protein_coding protein_coding MGP_AJ_T0020726.1 MGP_AJ_G0016169.1 mouse_genomes_project 1 73323777 73327623 + MGP_AJ_P0020726 Speg protein_coding protein_coding MGP_AJ_T0020727.1 MGP_AJ_G0016169.1 mouse_genomes_project 1 73323891 73327815 + MGP_AJ_P0020727 Speg protein_coding protein_coding MGP_AJ_T0020728.1 MGP_AJ_G0016169.1 mouse_genomes_project 1 73324266 73327460 + MGP_AJ_P0020728 Speg protein_coding protein_coding MGP_AJ_T0020729.1 MGP_AJ_G0016169.1 mouse_genomes_project 1 73346605 73350717 + Speg protein_coding retained_intron MGP_AJ_T0020401.1 MGP_AJ_G0016112.1 mouse_genomes_project 1 70157044 70182056 - MGP_AJ_P0020401 Pecr protein_coding nonsense_mediated_decay MGP_AJ_T0020402.1 MGP_AJ_G0016112.1 mouse_genomes_project 1 70157049 70182110 - MGP_AJ_P0020402 Pecr protein_coding nonsense_mediated_decay MGP_AJ_T0020403.1 MGP_AJ_G0016112.1 mouse_genomes_project 1 70157049 70182111 - MGP_AJ_P0020403 Pecr protein_coding protein_coding MGP_AJ_T0020404.1 MGP_AJ_G0016112.1 mouse_genomes_project 1 70164846 70182056 - MGP_AJ_P0020404 Pecr protein_coding protein_coding MGP_AJ_T0100458.1 MGP_AJ_G0038424.1 mouse_genomes_project 1 120945385 120945529 + Gm25771 snoRNA snoRNA MGP_AJ_T0002807.1 MGP_AJ_G0002661.1 mouse_genomes_project 1 56079719 56141207 - Gm15759 antisense antisense MGP_AJ_T0019066.1 MGP_AJ_G0015860.1 mouse_genomes_project 1 18763409 18766899 + MGP_AJ_P0019066 protein_coding protein_coding MGP_AJ_T0100443.1 MGP_AJ_G0038409.1 mouse_genomes_project 1 84362226 84362306 - Gm24148 snoRNA snoRNA MGP_AJ_T0000367.1 MGP_AJ_G0000311.1 mouse_genomes_project 1 7378448 7379368 - TEC TEC MGP_AJ_T0017048.1 MGP_AJ_G0015093.1 mouse_genomes_project 1 158087372 158163605 + Gm10530 processed_transcript sense_intronic MGP_AJ_T0017049.1 MGP_AJ_G0015093.1 mouse_genomes_project 1 158160390 158163605 + Gm10530 processed_transcript lincRNA MGP_AJ_T0000791.1 MGP_AJ_G0000728.1 mouse_genomes_project 1 190152568 190154414 + TEC TEC MGP_AJ_T0023100.1 MGP_AJ_G0016661.1 mouse_genomes_project 1 162662676 162731477 + MGP_AJ_P0023100 F5 protein_coding protein_coding MGP_AJ_T0000459.1 MGP_AJ_G0000400.1 mouse_genomes_project 1 41265438 41266721 + TEC TEC MGP_AJ_T0012093.1 MGP_AJ_G0010188.1 mouse_genomes_project 1 67275152 67275903 + processed_pseudogene processed_pseudogene MGP_AJ_T0012071.1 MGP_AJ_G0010166.1 mouse_genomes_project 1 61270470 61271087 - processed_pseudogene processed_pseudogene MGP_AJ_T0002953.1 MGP_AJ_G0002770.1 mouse_genomes_project 1 170476239 170485385 - Gm37065 antisense antisense MGP_AJ_T0012365.1 MGP_AJ_G0010460.1 mouse_genomes_project 1 187953361 187955170 - processed_pseudogene processed_pseudogene MGP_AJ_T0022669.1 MGP_AJ_G0016582.1 mouse_genomes_project 1 152192720 152197844 + MGP_AJ_P0022669 Rgs16 protein_coding protein_coding MGP_AJ_T0018817.1 MGP_AJ_G0015809.1 mouse_genomes_project 1 7027861 7061193 - MGP_AJ_P0018817 Vcpip1 protein_coding protein_coding MGP_AJ_T0002883.1 MGP_AJ_G0002716.1 mouse_genomes_project 1 129712441 129715829 + Gm28913 antisense antisense MGP_AJ_T0021032.1 MGP_AJ_G0016228.1 mouse_genomes_project 1 84397462 84399374 - MGP_AJ_P0021032 Nmur1 protein_coding protein_coding MGP_AJ_T0000658.1 MGP_AJ_G0000597.1 mouse_genomes_project 1 137553926 137556387 + TEC TEC MGP_AJ_T0002823.1 MGP_AJ_G0002673.1 mouse_genomes_project 1 67414314 67448513 + Gm29114 antisense antisense MGP_AJ_T0000702.1 MGP_AJ_G0000641.1 mouse_genomes_project 1 157705402 157708251 + TEC TEC MGP_AJ_T0012177.1 MGP_AJ_G0010272.1 mouse_genomes_project 1 105244179 105245207 - processed_pseudogene processed_pseudogene MGP_AJ_T0000747.1 MGP_AJ_G0000686.1 mouse_genomes_project 1 175523570 175525466 - TEC TEC MGP_AJ_T0022887.1 MGP_AJ_G0016619.1 mouse_genomes_project 1 157995472 158413098 + MGP_AJ_P0022887 Tnr protein_coding protein_coding MGP_AJ_T0022888.1 MGP_AJ_G0016619.1 mouse_genomes_project 1 157995544 158214526 + Tnr protein_coding retained_intron MGP_AJ_T0022889.1 MGP_AJ_G0016619.1 mouse_genomes_project 1 158214240 158405793 + MGP_AJ_P0022889 Tnr protein_coding protein_coding MGP_AJ_T0022890.1 MGP_AJ_G0016619.1 mouse_genomes_project 1 158251862 158331222 + MGP_AJ_P0022890 Tnr protein_coding protein_coding MGP_AJ_T0022891.1 MGP_AJ_G0016619.1 mouse_genomes_project 1 158331276 158344542 + MGP_AJ_P0022891 Tnr protein_coding protein_coding MGP_AJ_T0022868.1 MGP_AJ_G0016617.1 mouse_genomes_project 1 157177471 157420470 - MGP_AJ_P0022868 Pappa2 protein_coding protein_coding MGP_AJ_T0022869.1 MGP_AJ_G0016617.1 mouse_genomes_project 1 157231675 157281316 - MGP_AJ_P0022869 Pappa2 protein_coding protein_coding MGP_AJ_T0022870.1 MGP_AJ_G0016617.1 mouse_genomes_project 1 157281120 157310082 - Pappa2 protein_coding retained_intron MGP_AJ_T0022871.1 MGP_AJ_G0016617.1 mouse_genomes_project 1 157295600 157305505 - Pappa2 protein_coding processed_transcript MGP_AJ_T0022872.1 MGP_AJ_G0016617.1 mouse_genomes_project 1 157420178 157422436 - Pappa2 protein_coding processed_transcript MGP_AJ_T0022873.1 MGP_AJ_G0016617.1 mouse_genomes_project 1 157420229 157442487 - Pappa2 protein_coding processed_transcript MGP_AJ_T0011934.1 MGP_AJ_G0010029.1 mouse_genomes_project 1 26028789 26029032 - processed_pseudogene processed_pseudogene MGP_AJ_T0100401.1 MGP_AJ_G0038367.1 mouse_genomes_project 1 8463569 8463697 - Gm24173 snoRNA snoRNA MGP_AJ_T0000392.1 MGP_AJ_G0000336.1 mouse_genomes_project 1 17469839 17473438 - TEC TEC MGP_AJ_T0009485.1 MGP_AJ_G0007607.1 mouse_genomes_project 1 41622124 41622234 - Gm24180 miRNA miRNA MGP_AJ_T0023752.1 MGP_AJ_G0016831.1 mouse_genomes_project 1 177179596 177182777 + Cox20 protein_coding retained_intron MGP_AJ_T0023753.1 MGP_AJ_G0016831.1 mouse_genomes_project 1 177179596 177183135 + MGP_AJ_P0023753 Cox20 protein_coding protein_coding MGP_AJ_T0020853.1 MGP_AJ_G0016194.1 mouse_genomes_project 1 78458704 78717672 - MGP_AJ_P0020853 Dock10 protein_coding protein_coding MGP_AJ_T0020854.1 MGP_AJ_G0016194.1 mouse_genomes_project 1 78458819 78554940 - MGP_AJ_P0020854 Dock10 protein_coding protein_coding MGP_AJ_T0020855.1 MGP_AJ_G0016194.1 mouse_genomes_project 1 78459184 78630285 - MGP_AJ_P0020855 Dock10 protein_coding protein_coding MGP_AJ_T0020856.1 MGP_AJ_G0016194.1 mouse_genomes_project 1 78459272 78487451 - MGP_AJ_P0020856 Dock10 protein_coding protein_coding MGP_AJ_T0020857.1 MGP_AJ_G0016194.1 mouse_genomes_project 1 78459344 78630251 - MGP_AJ_P0020857 Dock10 protein_coding protein_coding MGP_AJ_T0020858.1 MGP_AJ_G0016194.1 mouse_genomes_project 1 78460522 78463971 - Dock10 protein_coding retained_intron MGP_AJ_T0020859.1 MGP_AJ_G0016194.1 mouse_genomes_project 1 78478107 78479987 - Dock10 protein_coding retained_intron MGP_AJ_T0020860.1 MGP_AJ_G0016194.1 mouse_genomes_project 1 78544261 78717751 - Dock10 protein_coding retained_intron MGP_AJ_T0020861.1 MGP_AJ_G0016194.1 mouse_genomes_project 1 78547826 78667277 - MGP_AJ_P0020861 Dock10 protein_coding protein_coding MGP_AJ_T0020862.1 MGP_AJ_G0016194.1 mouse_genomes_project 1 78554708 78630268 - MGP_AJ_P0020862 Dock10 protein_coding protein_coding MGP_AJ_T0020863.1 MGP_AJ_G0016194.1 mouse_genomes_project 1 78608649 78717711 - Dock10 protein_coding retained_intron MGP_AJ_T0005644.1 MGP_AJ_G0004751.1 mouse_genomes_project 1 4773346 4794715 + Gm30414 lincRNA lincRNA MGP_AJ_T0023470.1 MGP_AJ_G0016746.1 mouse_genomes_project 1 170158237 170177549 - MGP_AJ_P0023470 Ly9 protein_coding protein_coding MGP_AJ_T0023471.1 MGP_AJ_G0016746.1 mouse_genomes_project 1 170158246 170177497 - MGP_AJ_P0023471 Ly9 protein_coding protein_coding MGP_AJ_T0023472.1 MGP_AJ_G0016746.1 mouse_genomes_project 1 170158262 170177473 - MGP_AJ_P0023472 Ly9 protein_coding nonsense_mediated_decay MGP_AJ_T0023473.1 MGP_AJ_G0016746.1 mouse_genomes_project 1 170160203 170177468 - MGP_AJ_P0023473 Ly9 protein_coding protein_coding MGP_AJ_T0023474.1 MGP_AJ_G0016746.1 mouse_genomes_project 1 170170738 170177499 - Ly9 protein_coding retained_intron MGP_AJ_T0100446.1 MGP_AJ_G0038412.1 mouse_genomes_project 1 93261058 93261168 - Gm23181 snoRNA snoRNA MGP_AJ_T0023240.1 MGP_AJ_G0016691.1 mouse_genomes_project 1 165726778 165792408 - MGP_AJ_P0023240 Uck2 protein_coding protein_coding MGP_AJ_T0023241.1 MGP_AJ_G0016691.1 mouse_genomes_project 1 165729734 165791972 - MGP_AJ_P0023241 Uck2 protein_coding nonsense_mediated_decay MGP_AJ_T0023242.1 MGP_AJ_G0016691.1 mouse_genomes_project 1 165730120 165740719 - MGP_AJ_P0023242 Uck2 protein_coding protein_coding MGP_AJ_T0023243.1 MGP_AJ_G0016691.1 mouse_genomes_project 1 165730225 165747027 - MGP_AJ_P0023243 Uck2 protein_coding protein_coding MGP_AJ_T0023244.1 MGP_AJ_G0016691.1 mouse_genomes_project 1 165733776 165791689 - MGP_AJ_P0023244 Uck2 protein_coding protein_coding MGP_AJ_T0023245.1 MGP_AJ_G0016691.1 mouse_genomes_project 1 165738575 165791966 - MGP_AJ_P0023245 Uck2 protein_coding nonsense_mediated_decay MGP_AJ_T0023246.1 MGP_AJ_G0016691.1 mouse_genomes_project 1 165741365 165791795 - Uck2 protein_coding processed_transcript MGP_AJ_T0019041.1 MGP_AJ_G0015851.1 mouse_genomes_project 1 18130857 18134448 + MGP_AJ_P0019041 Il17a protein_coding protein_coding MGP_AJ_T0002984.1 MGP_AJ_G0002797.1 mouse_genomes_project 1 188710544 188714008 - Gm26574 antisense antisense MGP_AJ_T0012068.1 MGP_AJ_G0010163.1 mouse_genomes_project 1 60564530 60565409 + processed_pseudogene processed_pseudogene MGP_AJ_T0023493.1 MGP_AJ_G0016753.1 mouse_genomes_project 1 170567218 170595071 - MGP_AJ_P0023493 Vangl2 protein_coding protein_coding MGP_AJ_T0023494.1 MGP_AJ_G0016753.1 mouse_genomes_project 1 170567218 170593919 - MGP_AJ_P0023494 Vangl2 protein_coding protein_coding MGP_AJ_T0023495.1 MGP_AJ_G0016753.1 mouse_genomes_project 1 170570477 170593919 - MGP_AJ_P0023495 Vangl2 protein_coding protein_coding MGP_AJ_T0023496.1 MGP_AJ_G0016753.1 mouse_genomes_project 1 170570819 170575072 - Vangl2 protein_coding processed_transcript MGP_AJ_T0023497.1 MGP_AJ_G0016753.1 mouse_genomes_project 1 170575903 170593333 - MGP_AJ_P0023497 Vangl2 protein_coding protein_coding MGP_AJ_T0023498.1 MGP_AJ_G0016753.1 mouse_genomes_project 1 170575986 170593892 - MGP_AJ_P0023498 Vangl2 protein_coding protein_coding MGP_AJ_T0005766.1 MGP_AJ_G0004840.1 mouse_genomes_project 1 65136916 65223900 + Gm15668 lincRNA lincRNA MGP_AJ_T0011851.1 MGP_AJ_G0009946.1 mouse_genomes_project 1 2046020 2046292 - processed_pseudogene processed_pseudogene MGP_AJ_T0021837.1 MGP_AJ_G0016408.1 mouse_genomes_project 1 126284678 126432103 - MGP_AJ_P0021837 Zranb3 protein_coding protein_coding MGP_AJ_T0021838.1 MGP_AJ_G0016408.1 mouse_genomes_project 1 126285164 126432642 - MGP_AJ_P0021838 Zranb3 protein_coding protein_coding MGP_AJ_T0021839.1 MGP_AJ_G0016408.1 mouse_genomes_project 1 126296636 126304393 - Zranb3 protein_coding processed_transcript MGP_AJ_T0021840.1 MGP_AJ_G0016408.1 mouse_genomes_project 1 126319509 126432688 - Zranb3 protein_coding processed_transcript MGP_AJ_T0021841.1 MGP_AJ_G0016408.1 mouse_genomes_project 1 126328832 126432104 - Zranb3 protein_coding retained_intron MGP_AJ_T0021842.1 MGP_AJ_G0016408.1 mouse_genomes_project 1 126329220 126349815 - Zranb3 protein_coding processed_transcript MGP_AJ_T0021843.1 MGP_AJ_G0016408.1 mouse_genomes_project 1 126390298 126432095 - Zranb3 protein_coding retained_intron MGP_AJ_T0011994.1 MGP_AJ_G0010089.1 mouse_genomes_project 1 42623796 42624541 - processed_pseudogene processed_pseudogene MGP_AJ_T0000742.1 MGP_AJ_G0000681.1 mouse_genomes_project 1 174725843 174727799 - TEC TEC MGP_AJ_T0005969.1 MGP_AJ_G0005000.1 mouse_genomes_project 1 162659451 162663056 - Gm16548 lincRNA lincRNA MGP_AJ_T0002878.1 MGP_AJ_G0002713.1 mouse_genomes_project 1 129174655 129175821 - Gm28857 antisense antisense MGP_AJ_T0012136.1 MGP_AJ_G0010231.1 mouse_genomes_project 1 87131439 87132668 + processed_pseudogene processed_pseudogene MGP_AJ_T0012161.1 MGP_AJ_G0010256.1 mouse_genomes_project 1 99766621 99767070 + processed_pseudogene processed_pseudogene MGP_AJ_T0005698.1 MGP_AJ_G0004794.1 mouse_genomes_project 1 39956963 39957426 - Gm29664 lincRNA lincRNA MGP_AJ_T0022476.1 MGP_AJ_G0016547.1 mouse_genomes_project 1 142226881 142260799 + MGP_AJ_P0022476 Uchl5 protein_coding protein_coding MGP_AJ_T0022477.1 MGP_AJ_G0016547.1 mouse_genomes_project 1 142226885 142233845 + Uchl5 protein_coding retained_intron MGP_AJ_T0022478.1 MGP_AJ_G0016547.1 mouse_genomes_project 1 142226890 142260960 + MGP_AJ_P0022478 Uchl5 protein_coding protein_coding MGP_AJ_T0022479.1 MGP_AJ_G0016547.1 mouse_genomes_project 1 142226914 142235928 + Uchl5 protein_coding retained_intron MGP_AJ_T0022480.1 MGP_AJ_G0016547.1 mouse_genomes_project 1 142226930 142252497 + MGP_AJ_P0022480 Uchl5 protein_coding protein_coding MGP_AJ_T0022481.1 MGP_AJ_G0016547.1 mouse_genomes_project 1 142233225 142244176 + Uchl5 protein_coding retained_intron MGP_AJ_T0022482.1 MGP_AJ_G0016547.1 mouse_genomes_project 1 142244114 142259434 + MGP_AJ_P0022482 Uchl5 protein_coding nonsense_mediated_decay MGP_AJ_T0012043.1 MGP_AJ_G0010138.1 mouse_genomes_project 1 56456965 56457317 - processed_pseudogene processed_pseudogene MGP_AJ_T0019022.1 MGP_AJ_G0015845.1 mouse_genomes_project 1 15477837 15508299 - Crisp4 protein_coding retained_intron MGP_AJ_T0019023.1 MGP_AJ_G0015845.1 mouse_genomes_project 1 15477837 15508305 - MGP_AJ_P0019023 Crisp4 protein_coding protein_coding MGP_AJ_T0019024.1 MGP_AJ_G0015845.1 mouse_genomes_project 1 15477850 15499691 - MGP_AJ_P0019024 Crisp4 protein_coding protein_coding MGP_AJ_T0019025.1 MGP_AJ_G0015845.1 mouse_genomes_project 1 15478246 15508305 - MGP_AJ_P0019025 Crisp4 protein_coding protein_coding MGP_AJ_T0098885.1 MGP_AJ_G0036868.1 mouse_genomes_project 1 159208167 159208807 - Gm37328 sense_intronic sense_intronic MGP_AJ_T0000366.1 MGP_AJ_G0000310.1 mouse_genomes_project 1 7288062 7289444 + TEC TEC MGP_AJ_T0000573.1 MGP_AJ_G0000514.1 mouse_genomes_project 1 98256359 98259068 + TEC TEC MGP_AJ_T0000428.1 MGP_AJ_G0000370.1 mouse_genomes_project 1 30281708 30284178 + TEC TEC MGP_AJ_T0099187.1 MGP_AJ_G0037153.1 mouse_genomes_project 1 92039966 92040068 - Gm22089 snRNA snRNA MGP_AJ_T0023737.1 MGP_AJ_G0016827.1 mouse_genomes_project 1 176218218 176222099 + MGP_AJ_P0023737 Zbtb18 protein_coding protein_coding MGP_AJ_T0023738.1 MGP_AJ_G0016827.1 mouse_genomes_project 1 176218226 176222148 + MGP_AJ_P0023738 Zbtb18 protein_coding protein_coding MGP_AJ_T0023739.1 MGP_AJ_G0016827.1 mouse_genomes_project 1 176219651 176222791 + MGP_AJ_P0023739 Zbtb18 protein_coding protein_coding MGP_AJ_T0023740.1 MGP_AJ_G0016827.1 mouse_genomes_project 1 176219663 176222589 + MGP_AJ_P0023740 Zbtb18 protein_coding protein_coding MGP_AJ_T0023741.1 MGP_AJ_G0016827.1 mouse_genomes_project 1 176219739 176222521 + MGP_AJ_P0023741 Zbtb18 protein_coding protein_coding MGP_AJ_T0023742.1 MGP_AJ_G0016827.1 mouse_genomes_project 1 176220633 176221508 + Zbtb18 protein_coding processed_transcript MGP_AJ_T0023743.1 MGP_AJ_G0016827.1 mouse_genomes_project 1 176220823 176226022 + MGP_AJ_P0023743 Zbtb18 protein_coding protein_coding MGP_AJ_T0101678.1 MGP_AJ_G0039641.1 mouse_genomes_project 1 76917915 76918064 - transcribed_processed_pseudogene processed_transcript MGP_AJ_T0011848.1 MGP_AJ_G0009943.1 mouse_genomes_project 1 1804547 1805861 - processed_pseudogene processed_pseudogene MGP_AJ_T0021866.1 MGP_AJ_G0016412.1 mouse_genomes_project 1 126664481 126695336 - MGP_AJ_P0021866 Mcm6 protein_coding protein_coding MGP_AJ_T0021867.1 MGP_AJ_G0016412.1 mouse_genomes_project 1 126664484 126695319 - MGP_AJ_P0021867 Mcm6 protein_coding protein_coding MGP_AJ_T0021868.1 MGP_AJ_G0016412.1 mouse_genomes_project 1 126672344 126678583 - Mcm6 protein_coding retained_intron MGP_AJ_T0021869.1 MGP_AJ_G0016412.1 mouse_genomes_project 1 126673899 126676004 - Mcm6 protein_coding retained_intron MGP_AJ_T0011955.1 MGP_AJ_G0010050.1 mouse_genomes_project 1 31255587 31255915 + processed_pseudogene processed_pseudogene MGP_AJ_T0009467.1 MGP_AJ_G0007589.1 mouse_genomes_project 1 5870316 5870426 - Gm23358 miRNA miRNA MGP_AJ_T0005998.1 MGP_AJ_G0005025.1 mouse_genomes_project 1 175207707 175305415 - lincRNA lincRNA MGP_AJ_T0099182.1 MGP_AJ_G0037148.1 mouse_genomes_project 1 75836847 75837011 - Gm26263 snRNA snRNA MGP_AJ_T0019883.1 MGP_AJ_G0016021.1 mouse_genomes_project 1 54617325 54795804 - MGP_AJ_P0019883 Satb2 protein_coding protein_coding MGP_AJ_T0019884.1 MGP_AJ_G0016021.1 mouse_genomes_project 1 54617330 54795160 - MGP_AJ_P0019884 Satb2 protein_coding protein_coding MGP_AJ_T0019885.1 MGP_AJ_G0016021.1 mouse_genomes_project 1 54617332 54793174 - MGP_AJ_P0019885 Satb2 protein_coding protein_coding MGP_AJ_T0019886.1 MGP_AJ_G0016021.1 mouse_genomes_project 1 54770598 54793142 - MGP_AJ_P0019886 Satb2 protein_coding protein_coding MGP_AJ_T0019887.1 MGP_AJ_G0016021.1 mouse_genomes_project 1 54793041 54801921 - MGP_AJ_P0019887 Satb2 protein_coding protein_coding MGP_AJ_T0023966.1 MGP_AJ_G0016874.1 mouse_genomes_project 1 181390307 181441359 - MGP_AJ_P0023966 Capn2 protein_coding protein_coding MGP_AJ_T0023967.1 MGP_AJ_G0016874.1 mouse_genomes_project 1 181393261 181402990 - Capn2 protein_coding retained_intron MGP_AJ_T0023968.1 MGP_AJ_G0016874.1 mouse_genomes_project 1 181395698 181404677 - Capn2 protein_coding retained_intron MGP_AJ_T0023969.1 MGP_AJ_G0016874.1 mouse_genomes_project 1 181407055 181415842 - Capn2 protein_coding retained_intron MGP_AJ_T0023970.1 MGP_AJ_G0016874.1 mouse_genomes_project 1 181407060 181441443 - Capn2 protein_coding retained_intron MGP_AJ_T0019500.1 MGP_AJ_G0015944.1 mouse_genomes_project 1 37296981 37330254 - MGP_AJ_P0019500 Creg2 protein_coding protein_coding MGP_AJ_T0019882.1 MGP_AJ_G0016020.1 mouse_genomes_project 1 54461266 54462658 - MGP_AJ_P0019882 Hsfy2 protein_coding protein_coding MGP_AJ_T0019873.1 MGP_AJ_G0016018.1 mouse_genomes_project 1 53064445 53117232 - MGP_AJ_P0019873 Boll protein_coding nonsense_mediated_decay MGP_AJ_T0019874.1 MGP_AJ_G0016018.1 mouse_genomes_project 1 53086631 53186125 - MGP_AJ_P0019874 Boll protein_coding protein_coding MGP_AJ_T0019875.1 MGP_AJ_G0016018.1 mouse_genomes_project 1 53117122 53188703 - MGP_AJ_P0019875 Boll protein_coding nonsense_mediated_decay MGP_AJ_T0019876.1 MGP_AJ_G0016018.1 mouse_genomes_project 1 53117122 53188110 - MGP_AJ_P0019876 Boll protein_coding protein_coding MGP_AJ_T0019877.1 MGP_AJ_G0016018.1 mouse_genomes_project 1 53117122 53188703 - MGP_AJ_P0019877 Boll protein_coding protein_coding MGP_AJ_T0019878.1 MGP_AJ_G0016018.1 mouse_genomes_project 1 53163423 53188853 - MGP_AJ_P0019878 Boll protein_coding protein_coding MGP_AJ_T0019879.1 MGP_AJ_G0016018.1 mouse_genomes_project 1 53166081 53186125 - Boll protein_coding processed_transcript MGP_AJ_T0102148.1 MGP_AJ_G0039891.1 mouse_genomes_project 1 51158537 51161269 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0012376.1 MGP_AJ_G0010471.1 mouse_genomes_project 1 191741516 191741988 + processed_pseudogene processed_pseudogene MGP_AJ_T0021483.1 MGP_AJ_G0016329.1 mouse_genomes_project 1 91978669 92004422 + MGP_AJ_P0021483 Atg4b protein_coding protein_coding MGP_AJ_T0021484.1 MGP_AJ_G0016329.1 mouse_genomes_project 1 91982069 92021730 + MGP_AJ_P0021484 Atg4b protein_coding protein_coding MGP_AJ_T0021485.1 MGP_AJ_G0016329.1 mouse_genomes_project 1 91982152 92007027 + MGP_AJ_P0021485 Atg4b protein_coding protein_coding MGP_AJ_T0021486.1 MGP_AJ_G0016329.1 mouse_genomes_project 1 91982199 92015964 + MGP_AJ_P0021486 Atg4b protein_coding nonsense_mediated_decay MGP_AJ_T0021487.1 MGP_AJ_G0016329.1 mouse_genomes_project 1 91982209 92019264 + Atg4b protein_coding retained_intron MGP_AJ_T0021488.1 MGP_AJ_G0016329.1 mouse_genomes_project 1 91982326 91995733 + Atg4b protein_coding processed_transcript MGP_AJ_T0021489.1 MGP_AJ_G0016329.1 mouse_genomes_project 1 91995709 92004187 + Atg4b protein_coding retained_intron MGP_AJ_T0021490.1 MGP_AJ_G0016329.1 mouse_genomes_project 1 92015383 92016167 + Atg4b protein_coding retained_intron MGP_AJ_T0021491.1 MGP_AJ_G0016329.1 mouse_genomes_project 1 92015837 92018962 + MGP_AJ_P0021491 Atg4b protein_coding nonsense_mediated_decay MGP_AJ_T0021492.1 MGP_AJ_G0016329.1 mouse_genomes_project 1 92016668 92017666 + Atg4b protein_coding retained_intron MGP_AJ_T0021493.1 MGP_AJ_G0016329.1 mouse_genomes_project 1 92017303 92018984 + Atg4b protein_coding retained_intron MGP_AJ_T0022606.1 MGP_AJ_G0016570.1 mouse_genomes_project 1 150944701 151192772 - MGP_AJ_P0022606 Rgl1 protein_coding protein_coding MGP_AJ_T0022607.1 MGP_AJ_G0016570.1 mouse_genomes_project 1 150944892 151055967 - MGP_AJ_P0022607 Rgl1 protein_coding protein_coding MGP_AJ_T0022608.1 MGP_AJ_G0016570.1 mouse_genomes_project 1 150946700 151192818 - MGP_AJ_P0022608 Rgl1 protein_coding protein_coding MGP_AJ_T0022609.1 MGP_AJ_G0016570.1 mouse_genomes_project 1 150981125 150982662 - Rgl1 protein_coding retained_intron MGP_AJ_T0022610.1 MGP_AJ_G0016570.1 mouse_genomes_project 1 150987160 151022372 - Rgl1 protein_coding processed_transcript MGP_AJ_T0022611.1 MGP_AJ_G0016570.1 mouse_genomes_project 1 150987160 151055779 - MGP_AJ_P0022611 Rgl1 protein_coding nonsense_mediated_decay MGP_AJ_T0011901.1 MGP_AJ_G0009996.1 mouse_genomes_project 1 15308794 15310193 + processed_pseudogene processed_pseudogene MGP_AJ_T0022687.1 MGP_AJ_G0016587.1 mouse_genomes_project 1 152359578 152369356 + MGP_AJ_P0022687 Glul protein_coding protein_coding MGP_AJ_T0022688.1 MGP_AJ_G0016587.1 mouse_genomes_project 1 152360240 152366773 + MGP_AJ_P0022688 Glul protein_coding protein_coding MGP_AJ_T0022689.1 MGP_AJ_G0016587.1 mouse_genomes_project 1 152360750 152365989 + MGP_AJ_P0022689 Glul protein_coding protein_coding MGP_AJ_T0022690.1 MGP_AJ_G0016587.1 mouse_genomes_project 1 152363430 152366662 + Glul protein_coding processed_transcript MGP_AJ_T0022691.1 MGP_AJ_G0016587.1 mouse_genomes_project 1 152365675 152366749 + Glul protein_coding retained_intron MGP_AJ_T0018756.1 MGP_AJ_G0015799.1 mouse_genomes_project 1 3059786 3063572 - MGP_AJ_P0018756 Npbwr1 protein_coding protein_coding MGP_AJ_T0011913.1 MGP_AJ_G0010008.1 mouse_genomes_project 1 18806855 18807071 + processed_pseudogene processed_pseudogene MGP_AJ_T0023450.1 MGP_AJ_G0016741.1 mouse_genomes_project 1 169987570 169994814 + MGP_AJ_P0023450 Usf1 protein_coding nonsense_mediated_decay MGP_AJ_T0023451.1 MGP_AJ_G0016741.1 mouse_genomes_project 1 169987570 169995835 + MGP_AJ_P0023451 Usf1 protein_coding protein_coding MGP_AJ_T0023452.1 MGP_AJ_G0016741.1 mouse_genomes_project 1 169987570 169993666 + MGP_AJ_P0023452 Usf1 protein_coding protein_coding MGP_AJ_T0023453.1 MGP_AJ_G0016741.1 mouse_genomes_project 1 169987583 169992423 + Usf1 protein_coding processed_transcript MGP_AJ_T0023454.1 MGP_AJ_G0016741.1 mouse_genomes_project 1 169987591 169994049 + Usf1 protein_coding retained_intron MGP_AJ_T0023455.1 MGP_AJ_G0016741.1 mouse_genomes_project 1 169987631 169992299 + Usf1 protein_coding retained_intron MGP_AJ_T0023456.1 MGP_AJ_G0016741.1 mouse_genomes_project 1 169987641 169995450 + MGP_AJ_P0023456 Usf1 protein_coding protein_coding MGP_AJ_T0023457.1 MGP_AJ_G0016741.1 mouse_genomes_project 1 169987938 169995436 + MGP_AJ_P0023457 Usf1 protein_coding protein_coding MGP_AJ_T0023458.1 MGP_AJ_G0016741.1 mouse_genomes_project 1 169994022 169994623 + Usf1 protein_coding retained_intron MGP_AJ_T0023459.1 MGP_AJ_G0016741.1 mouse_genomes_project 1 169994152 169995124 + Usf1 protein_coding retained_intron MGP_AJ_T0012069.1 MGP_AJ_G0010164.1 mouse_genomes_project 1 60933780 60934148 + processed_pseudogene processed_pseudogene MGP_AJ_T0002903.1 MGP_AJ_G0002732.1 mouse_genomes_project 1 139094702 139176908 - 4930590L20Rik antisense antisense MGP_AJ_T0099161.1 MGP_AJ_G0037127.1 mouse_genomes_project 1 33356189 33356294 + Gm25634 snRNA snRNA MGP_AJ_T0000380.1 MGP_AJ_G0000324.1 mouse_genomes_project 1 10688434 10690684 - TEC TEC MGP_AJ_T0023630.1 MGP_AJ_G0016791.1 mouse_genomes_project 1 172431510 172449865 - MGP_AJ_P0023630 AI607873 protein_coding protein_coding MGP_AJ_T0023631.1 MGP_AJ_G0016791.1 mouse_genomes_project 1 172431763 172449803 - MGP_AJ_P0023631 AI607873 protein_coding protein_coding MGP_AJ_T0012007.1 MGP_AJ_G0010102.1 mouse_genomes_project 1 45428164 45428820 + processed_pseudogene processed_pseudogene MGP_AJ_T0000349.1 MGP_AJ_G0000293.1 mouse_genomes_project 1 601200 603257 - TEC TEC MGP_AJ_T0020284.1 MGP_AJ_G0016094.1 mouse_genomes_project 1 63851343 63853130 + MGP_AJ_P0020284 Crygf protein_coding protein_coding MGP_AJ_T0020285.1 MGP_AJ_G0016094.1 mouse_genomes_project 1 63851361 63853129 + MGP_AJ_P0020285 Crygf protein_coding protein_coding MGP_AJ_T0023688.1 MGP_AJ_G0016818.1 mouse_genomes_project 1 174459872 174465989 - MGP_AJ_P0023688 Chml protein_coding protein_coding MGP_AJ_T0100412.1 MGP_AJ_G0038378.1 mouse_genomes_project 1 21945899 21946036 - Gm26418 snoRNA snoRNA MGP_AJ_T0024233.1 MGP_AJ_G0016930.1 mouse_genomes_project 1 190903018 190904432 - Traf5 protein_coding retained_intron MGP_AJ_T0024234.1 MGP_AJ_G0016930.1 mouse_genomes_project 1 190903018 190905786 - MGP_AJ_P0024234 Traf5 protein_coding protein_coding MGP_AJ_T0024235.1 MGP_AJ_G0016930.1 mouse_genomes_project 1 190903243 190929404 - MGP_AJ_P0024235 Traf5 protein_coding unknown_likely_coding MGP_AJ_T0024236.1 MGP_AJ_G0016930.1 mouse_genomes_project 1 190903243 190950868 - MGP_AJ_P0024236 Traf5 protein_coding protein_coding MGP_AJ_T0024237.1 MGP_AJ_G0016930.1 mouse_genomes_project 1 190912616 190916975 - MGP_AJ_P0024237 Traf5 protein_coding protein_coding MGP_AJ_T0024238.1 MGP_AJ_G0016930.1 mouse_genomes_project 1 190913643 190916975 - Traf5 protein_coding retained_intron MGP_AJ_T0012171.1 MGP_AJ_G0010266.1 mouse_genomes_project 1 103942071 103942332 + processed_pseudogene processed_pseudogene MGP_AJ_T0012092.1 MGP_AJ_G0010187.1 mouse_genomes_project 1 67028963 67029349 - processed_pseudogene processed_pseudogene MGP_AJ_T0011788.1 MGP_AJ_G0009910.1 mouse_genomes_project 1 172897088 172898138 + MGP_AJ_P0011788 Olfr421-ps1 polymorphic_pseudogene polymorphic_pseudogene MGP_AJ_T0019091.1 MGP_AJ_G0015867.1 mouse_genomes_project 1 21243550 21301184 - Smap1 protein_coding processed_transcript MGP_AJ_T0019092.1 MGP_AJ_G0015867.1 mouse_genomes_project 1 21244311 21314750 - MGP_AJ_P0019092 Smap1 protein_coding protein_coding MGP_AJ_T0019093.1 MGP_AJ_G0015867.1 mouse_genomes_project 1 21244317 21314912 - MGP_AJ_P0019093 Smap1 protein_coding protein_coding MGP_AJ_T0019094.1 MGP_AJ_G0015867.1 mouse_genomes_project 1 21244870 21246470 - Smap1 protein_coding processed_transcript MGP_AJ_T0019095.1 MGP_AJ_G0015867.1 mouse_genomes_project 1 21246972 21266986 - Smap1 protein_coding processed_transcript MGP_AJ_T0019096.1 MGP_AJ_G0015867.1 mouse_genomes_project 1 21247225 21301151 - Smap1 protein_coding processed_transcript MGP_AJ_T0019097.1 MGP_AJ_G0015867.1 mouse_genomes_project 1 21247487 21283835 - Smap1 protein_coding retained_intron MGP_AJ_T0002887.1 MGP_AJ_G0002720.1 mouse_genomes_project 1 131501538 131521375 - Gm28609 antisense antisense MGP_AJ_T0002986.1 MGP_AJ_G0002799.1 mouse_genomes_project 1 189054649 189055613 + Gm28172 antisense antisense MGP_AJ_T0012295.1 MGP_AJ_G0010390.1 mouse_genomes_project 1 153660404 153660986 + processed_pseudogene processed_pseudogene MGP_AJ_T0011250.1 MGP_AJ_G0009372.1 mouse_genomes_project 1 72750279 72750372 + Gm27507 misc_RNA misc_RNA MGP_AJ_T0005869.1 MGP_AJ_G0004921.1 mouse_genomes_project 1 109706364 109764942 - Gm29088 lincRNA lincRNA MGP_AJ_T0102096.1 MGP_AJ_G0039866.1 mouse_genomes_project 1 61821266 61839307 + unitary_pseudogene unitary_pseudogene MGP_AJ_T0000360.1 MGP_AJ_G0000304.1 mouse_genomes_project 1 4322020 4326177 + TEC TEC MGP_AJ_T0000576.1 MGP_AJ_G0000517.1 mouse_genomes_project 1 103283433 103286393 + TEC TEC MGP_AJ_T0005959.1 MGP_AJ_G0004993.1 mouse_genomes_project 1 158517971 158520602 - Gm37294 lincRNA lincRNA MGP_AJ_T0019743.1 MGP_AJ_G0015990.1 mouse_genomes_project 1 50222489 50266199 - MGP_AJ_P0019743 Nab1 protein_coding protein_coding MGP_AJ_T0019744.1 MGP_AJ_G0015990.1 mouse_genomes_project 1 50222489 50265820 - MGP_AJ_P0019744 Nab1 protein_coding protein_coding MGP_AJ_T0019745.1 MGP_AJ_G0015990.1 mouse_genomes_project 1 50224413 50256270 - MGP_AJ_P0019745 Nab1 protein_coding protein_coding MGP_AJ_T0019746.1 MGP_AJ_G0015990.1 mouse_genomes_project 1 50224436 50232253 - Nab1 protein_coding retained_intron MGP_AJ_T0019747.1 MGP_AJ_G0015990.1 mouse_genomes_project 1 50255843 50265835 - Nab1 protein_coding processed_transcript MGP_AJ_T0102181.1 MGP_AJ_G0039924.1 mouse_genomes_project 1 129104915 129117584 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0020006.1 MGP_AJ_G0016041.1 mouse_genomes_project 1 56657242 56704074 + MGP_AJ_P0020006 Casp8 protein_coding protein_coding MGP_AJ_T0020007.1 MGP_AJ_G0016041.1 mouse_genomes_project 1 56657345 56703325 + MGP_AJ_P0020007 Casp8 protein_coding protein_coding MGP_AJ_T0020008.1 MGP_AJ_G0016041.1 mouse_genomes_project 1 56664847 56703579 + MGP_AJ_P0020008 Casp8 protein_coding protein_coding MGP_AJ_T0020009.1 MGP_AJ_G0016041.1 mouse_genomes_project 1 56664998 56703325 + MGP_AJ_P0020009 Casp8 protein_coding protein_coding MGP_AJ_T0000413.1 MGP_AJ_G0000355.1 mouse_genomes_project 1 23135683 23139264 - TEC TEC MGP_AJ_T0002973.1 MGP_AJ_G0002787.1 mouse_genomes_project 1 184117732 184121908 - Gm34882 antisense antisense MGP_AJ_T0000441.1 MGP_AJ_G0000382.1 mouse_genomes_project 1 33619408 33620781 - TEC TEC MGP_AJ_T0023015.1 MGP_AJ_G0016641.1 mouse_genomes_project 1 161071131 161099987 + MGP_AJ_P0023015 Vamp4 protein_coding protein_coding MGP_AJ_T0023016.1 MGP_AJ_G0016641.1 mouse_genomes_project 1 161071243 161083084 + Vamp4 protein_coding retained_intron MGP_AJ_T0023017.1 MGP_AJ_G0016641.1 mouse_genomes_project 1 161071256 161099986 + MGP_AJ_P0023017 Vamp4 protein_coding protein_coding MGP_AJ_T0023018.1 MGP_AJ_G0016641.1 mouse_genomes_project 1 161071444 161099981 + MGP_AJ_P0023018 Vamp4 protein_coding protein_coding MGP_AJ_T0023019.1 MGP_AJ_G0016641.1 mouse_genomes_project 1 161075437 161095656 + Vamp4 protein_coding processed_transcript MGP_AJ_T0020665.1 MGP_AJ_G0016162.1 mouse_genomes_project 1 73136947 73142014 - MGP_AJ_P0020665 Tuba4a protein_coding protein_coding MGP_AJ_T0020666.1 MGP_AJ_G0016162.1 mouse_genomes_project 1 73137691 73141344 - MGP_AJ_P0020666 Tuba4a protein_coding protein_coding MGP_AJ_T0020667.1 MGP_AJ_G0016162.1 mouse_genomes_project 1 73138331 73140154 - MGP_AJ_P0020667 Tuba4a protein_coding protein_coding MGP_AJ_T0020668.1 MGP_AJ_G0016162.1 mouse_genomes_project 1 73138675 73140134 - MGP_AJ_P0020668 Tuba4a protein_coding protein_coding MGP_AJ_T0020669.1 MGP_AJ_G0016162.1 mouse_genomes_project 1 73139154 73141963 - Tuba4a protein_coding retained_intron MGP_AJ_T0020670.1 MGP_AJ_G0016162.1 mouse_genomes_project 1 73139576 73142585 - MGP_AJ_P0020670 Tuba4a protein_coding protein_coding MGP_AJ_T0020671.1 MGP_AJ_G0016162.1 mouse_genomes_project 1 73139608 73141608 - MGP_AJ_P0020671 Tuba4a protein_coding protein_coding MGP_AJ_T0020672.1 MGP_AJ_G0016162.1 mouse_genomes_project 1 73139632 73141608 - MGP_AJ_P0020672 Tuba4a protein_coding protein_coding MGP_AJ_T0021726.1 MGP_AJ_G0016383.1 mouse_genomes_project 1 118300793 118371229 - MGP_AJ_P0021726 Cfap221 protein_coding protein_coding MGP_AJ_T0021727.1 MGP_AJ_G0016383.1 mouse_genomes_project 1 118300971 118369255 - MGP_AJ_P0021727 Cfap221 protein_coding protein_coding MGP_AJ_T0021728.1 MGP_AJ_G0016383.1 mouse_genomes_project 1 118336146 118371273 - MGP_AJ_P0021728 Cfap221 protein_coding protein_coding MGP_AJ_T0000625.1 MGP_AJ_G0000566.1 mouse_genomes_project 1 130354800 130356711 + TEC TEC MGP_AJ_T0006025.1 MGP_AJ_G0005046.1 mouse_genomes_project 1 183220361 183252992 + Gm37223 lincRNA lincRNA MGP_AJ_T0006026.1 MGP_AJ_G0005046.1 mouse_genomes_project 1 183220361 183253024 + Gm37223 lincRNA lincRNA MGP_AJ_T0006027.1 MGP_AJ_G0005046.1 mouse_genomes_project 1 183220361 183253021 + Gm37223 lincRNA lincRNA MGP_AJ_T0006028.1 MGP_AJ_G0005046.1 mouse_genomes_project 1 183220365 183256812 + Gm37223 lincRNA lincRNA MGP_AJ_T0006029.1 MGP_AJ_G0005046.1 mouse_genomes_project 1 183220376 183256840 + Gm37223 lincRNA lincRNA MGP_AJ_T0006031.1 MGP_AJ_G0005046.1 mouse_genomes_project 1 183245138 183256812 + Gm37223 lincRNA lincRNA MGP_AJ_T0000739.1 MGP_AJ_G0000678.1 mouse_genomes_project 1 171097334 171098901 + TEC TEC MGP_AJ_T0000547.1 MGP_AJ_G0000488.1 mouse_genomes_project 1 84831315 84834265 + TEC TEC MGP_AJ_T0022932.1 MGP_AJ_G0016627.1 mouse_genomes_project 1 159486828 159518296 - MGP_AJ_P0022932 Zbtb37 protein_coding protein_coding MGP_AJ_T0022933.1 MGP_AJ_G0016627.1 mouse_genomes_project 1 159492694 159518296 - MGP_AJ_P0022933 Zbtb37 protein_coding nonsense_mediated_decay MGP_AJ_T0022934.1 MGP_AJ_G0016627.1 mouse_genomes_project 1 159492700 159518281 - MGP_AJ_P0022934 Zbtb37 protein_coding nonsense_mediated_decay MGP_AJ_T0022935.1 MGP_AJ_G0016627.1 mouse_genomes_project 1 159501667 159517708 - MGP_AJ_P0022935 Zbtb37 protein_coding protein_coding MGP_AJ_T0022936.1 MGP_AJ_G0016627.1 mouse_genomes_project 1 159503174 159518295 - MGP_AJ_P0022936 Zbtb37 protein_coding protein_coding MGP_AJ_T0022937.1 MGP_AJ_G0016627.1 mouse_genomes_project 1 159503338 159517733 - MGP_AJ_P0022937 Zbtb37 protein_coding protein_coding MGP_AJ_T0022938.1 MGP_AJ_G0016627.1 mouse_genomes_project 1 159515884 159518263 - MGP_AJ_P0022938 Zbtb37 protein_coding protein_coding MGP_AJ_T0012163.1 MGP_AJ_G0010258.1 mouse_genomes_project 1 100132228 100132958 - processed_pseudogene processed_pseudogene MGP_AJ_T0000585.1 MGP_AJ_G0000526.1 mouse_genomes_project 1 110141939 110144422 + TEC TEC MGP_AJ_T0000633.1 MGP_AJ_G0000573.1 mouse_genomes_project 1 132560968 132563723 - TEC TEC MGP_AJ_T0019113.1 MGP_AJ_G0015871.1 mouse_genomes_project 1 21662204 21857388 - Col19a1 protein_coding processed_transcript MGP_AJ_T0019114.1 MGP_AJ_G0015871.1 mouse_genomes_project 1 21664310 21985603 - MGP_AJ_P0019114 Col19a1 protein_coding protein_coding MGP_AJ_T0019115.1 MGP_AJ_G0015871.1 mouse_genomes_project 1 21680500 21985542 - MGP_AJ_P0019115 Col19a1 protein_coding protein_coding MGP_AJ_T0009551.1 MGP_AJ_G0007673.1 mouse_genomes_project 1 167020541 167020661 + Mir6348 miRNA miRNA MGP_AJ_T0011876.1 MGP_AJ_G0009971.1 mouse_genomes_project 1 6758789 6759959 + processed_pseudogene processed_pseudogene MGP_AJ_T0022791.1 MGP_AJ_G0016605.1 mouse_genomes_project 1 154889665 154939179 - MGP_AJ_P0022791 Soat1 protein_coding protein_coding MGP_AJ_T0022792.1 MGP_AJ_G0016605.1 mouse_genomes_project 1 154894904 154931816 - MGP_AJ_P0022792 Soat1 protein_coding protein_coding MGP_AJ_T0022793.1 MGP_AJ_G0016605.1 mouse_genomes_project 1 154895837 154897789 - Soat1 protein_coding retained_intron MGP_AJ_T0022794.1 MGP_AJ_G0016605.1 mouse_genomes_project 1 154896088 154898235 - Soat1 protein_coding retained_intron MGP_AJ_T0022795.1 MGP_AJ_G0016605.1 mouse_genomes_project 1 154905617 154939088 - Soat1 protein_coding retained_intron MGP_AJ_T0022796.1 MGP_AJ_G0016605.1 mouse_genomes_project 1 154906043 154939144 - MGP_AJ_P0022796 Soat1 protein_coding protein_coding MGP_AJ_T0022797.1 MGP_AJ_G0016605.1 mouse_genomes_project 1 154911836 154939045 - Soat1 protein_coding retained_intron MGP_AJ_T0022798.1 MGP_AJ_G0016605.1 mouse_genomes_project 1 154912069 154939112 - MGP_AJ_P0022798 Soat1 protein_coding protein_coding MGP_AJ_T0023681.1 MGP_AJ_G0016816.1 mouse_genomes_project 1 174390666 174437600 + MGP_AJ_P0023681 Kmo protein_coding nonsense_mediated_decay MGP_AJ_T0023682.1 MGP_AJ_G0016816.1 mouse_genomes_project 1 174402283 174438491 + MGP_AJ_P0023682 Kmo protein_coding protein_coding MGP_AJ_T0023683.1 MGP_AJ_G0016816.1 mouse_genomes_project 1 174402288 174431736 + Kmo protein_coding retained_intron MGP_AJ_T0023684.1 MGP_AJ_G0016816.1 mouse_genomes_project 1 174402313 174410908 + Kmo protein_coding processed_transcript MGP_AJ_T0023685.1 MGP_AJ_G0016816.1 mouse_genomes_project 1 174402467 174439754 + MGP_AJ_P0023685 Kmo protein_coding protein_coding MGP_AJ_T0023686.1 MGP_AJ_G0016816.1 mouse_genomes_project 1 174402526 174423413 + Kmo protein_coding processed_transcript MGP_AJ_T0021399.1 MGP_AJ_G0016314.1 mouse_genomes_project 1 91234858 91321661 - MGP_AJ_P0021399 Kif1a protein_coding protein_coding MGP_AJ_T0021400.1 MGP_AJ_G0016314.1 mouse_genomes_project 1 91237141 91321670 - MGP_AJ_P0021400 Kif1a protein_coding protein_coding MGP_AJ_T0021401.1 MGP_AJ_G0016314.1 mouse_genomes_project 1 91237330 91321790 - MGP_AJ_P0021401 Kif1a protein_coding protein_coding MGP_AJ_T0021402.1 MGP_AJ_G0016314.1 mouse_genomes_project 1 91237670 91321686 - MGP_AJ_P0021402 Kif1a protein_coding protein_coding MGP_AJ_T0021403.1 MGP_AJ_G0016314.1 mouse_genomes_project 1 91237847 91302375 - MGP_AJ_P0021403 Kif1a protein_coding protein_coding MGP_AJ_T0021404.1 MGP_AJ_G0016314.1 mouse_genomes_project 1 91241715 91244103 - MGP_AJ_P0021404 Kif1a protein_coding nonsense_mediated_decay MGP_AJ_T0021405.1 MGP_AJ_G0016314.1 mouse_genomes_project 1 91242887 91246600 - Kif1a protein_coding retained_intron MGP_AJ_T0021406.1 MGP_AJ_G0016314.1 mouse_genomes_project 1 91258400 91321685 - Kif1a protein_coding processed_transcript MGP_AJ_T0021407.1 MGP_AJ_G0016314.1 mouse_genomes_project 1 91261855 91274373 - MGP_AJ_P0021407 Kif1a protein_coding nonsense_mediated_decay MGP_AJ_T0021408.1 MGP_AJ_G0016314.1 mouse_genomes_project 1 91286083 91288710 - Kif1a protein_coding processed_transcript MGP_AJ_T0021409.1 MGP_AJ_G0016314.1 mouse_genomes_project 1 91297677 91321673 - MGP_AJ_P0021409 Kif1a protein_coding protein_coding MGP_AJ_T0012138.1 MGP_AJ_G0010233.1 mouse_genomes_project 1 87438231 87439031 - processed_pseudogene processed_pseudogene MGP_AJ_T0023062.1 MGP_AJ_G0016650.1 mouse_genomes_project 1 161527248 161592269 - MGP_AJ_P0023062 Mroh9 protein_coding protein_coding MGP_AJ_T0012248.1 MGP_AJ_G0010343.1 mouse_genomes_project 1 135315980 135316629 - processed_pseudogene processed_pseudogene MGP_AJ_T0021206.1 MGP_AJ_G0016271.1 mouse_genomes_project 1 87644264 88096640 + MGP_AJ_P0021206 Agap1 protein_coding protein_coding MGP_AJ_T0021207.1 MGP_AJ_G0016271.1 mouse_genomes_project 1 87644332 88089024 + MGP_AJ_P0021207 Agap1 protein_coding protein_coding MGP_AJ_T0021208.1 MGP_AJ_G0016271.1 mouse_genomes_project 1 87644714 87649099 + Agap1 protein_coding retained_intron MGP_AJ_T0021209.1 MGP_AJ_G0016271.1 mouse_genomes_project 1 87778853 88094300 + MGP_AJ_P0021209 Agap1 protein_coding protein_coding MGP_AJ_T0021210.1 MGP_AJ_G0016271.1 mouse_genomes_project 1 87779364 88089007 + MGP_AJ_P0021210 Agap1 protein_coding unknown_likely_coding MGP_AJ_T0002957.1 MGP_AJ_G0002774.1 mouse_genomes_project 1 170889354 170890022 + Gm36937 antisense antisense MGP_AJ_T0100479.1 MGP_AJ_G0038445.1 mouse_genomes_project 1 159520123 159520184 + Gm23212 snoRNA snoRNA MGP_AJ_T0000609.1 MGP_AJ_G0000550.1 mouse_genomes_project 1 126310341 126317125 - TEC TEC MGP_AJ_T0002964.1 MGP_AJ_G0002780.1 mouse_genomes_project 1 177769688 177789431 - Gm16564 antisense antisense MGP_AJ_T0011849.1 MGP_AJ_G0009944.1 mouse_genomes_project 1 1845503 1846134 - processed_pseudogene processed_pseudogene MGP_AJ_T0022968.1 MGP_AJ_G0016632.1 mouse_genomes_project 1 159725691 159736799 - MGP_AJ_P0022968 Prdx6 protein_coding protein_coding MGP_AJ_T0022969.1 MGP_AJ_G0016632.1 mouse_genomes_project 1 159726617 159736766 - MGP_AJ_P0022969 Prdx6 protein_coding nonsense_mediated_decay MGP_AJ_T0022970.1 MGP_AJ_G0016632.1 mouse_genomes_project 1 159727166 159736749 - Prdx6 protein_coding processed_transcript MGP_AJ_T0022971.1 MGP_AJ_G0016632.1 mouse_genomes_project 1 159727200 159736746 - MGP_AJ_P0022971 Prdx6 protein_coding protein_coding MGP_AJ_T0022972.1 MGP_AJ_G0016632.1 mouse_genomes_project 1 159727237 159736701 - Prdx6 protein_coding processed_transcript MGP_AJ_T0022973.1 MGP_AJ_G0016632.1 mouse_genomes_project 1 159727410 159736134 - Prdx6 protein_coding processed_transcript MGP_AJ_T0022974.1 MGP_AJ_G0016632.1 mouse_genomes_project 1 159729214 159736746 - Prdx6 protein_coding processed_transcript MGP_AJ_T0022975.1 MGP_AJ_G0016632.1 mouse_genomes_project 1 159734188 159736742 - Prdx6 protein_coding retained_intron MGP_AJ_T0022976.1 MGP_AJ_G0016632.1 mouse_genomes_project 1 159735146 159736742 - Prdx6 protein_coding retained_intron MGP_AJ_T0011855.1 MGP_AJ_G0009950.1 mouse_genomes_project 1 3190757 3191840 - processed_pseudogene processed_pseudogene MGP_AJ_T0005824.1 MGP_AJ_G0004883.1 mouse_genomes_project 1 86958721 86959568 + Platr5 lincRNA lincRNA MGP_AJ_T0005825.1 MGP_AJ_G0004883.1 mouse_genomes_project 1 86958785 86959541 + Platr5 lincRNA lincRNA MGP_AJ_T0024055.1 MGP_AJ_G0016894.1 mouse_genomes_project 1 184206903 184233302 + MGP_AJ_P0024055 Bpnt1 protein_coding protein_coding MGP_AJ_T0024056.1 MGP_AJ_G0016894.1 mouse_genomes_project 1 184206913 184232151 + MGP_AJ_P0024056 Bpnt1 protein_coding unknown_likely_coding MGP_AJ_T0024057.1 MGP_AJ_G0016894.1 mouse_genomes_project 1 184206927 184220308 + MGP_AJ_P0024057 Bpnt1 protein_coding protein_coding MGP_AJ_T0024058.1 MGP_AJ_G0016894.1 mouse_genomes_project 1 184206934 184232306 + MGP_AJ_P0024058 Bpnt1 protein_coding protein_coding MGP_AJ_T0024059.1 MGP_AJ_G0016894.1 mouse_genomes_project 1 184206961 184221695 + Bpnt1 protein_coding processed_transcript MGP_AJ_T0023401.1 MGP_AJ_G0016732.1 mouse_genomes_project 1 169856848 169862022 - Ppox protein_coding retained_intron MGP_AJ_T0023402.1 MGP_AJ_G0016732.1 mouse_genomes_project 1 169857819 169862022 - Ppox protein_coding retained_intron MGP_AJ_T0023403.1 MGP_AJ_G0016732.1 mouse_genomes_project 1 169857819 169862022 - MGP_AJ_P0023403 Ppox protein_coding protein_coding MGP_AJ_T0023404.1 MGP_AJ_G0016732.1 mouse_genomes_project 1 169858274 169861595 - MGP_AJ_P0023404 Ppox protein_coding protein_coding MGP_AJ_T0023405.1 MGP_AJ_G0016732.1 mouse_genomes_project 1 169858962 169860663 - Ppox protein_coding retained_intron MGP_AJ_T0023406.1 MGP_AJ_G0016732.1 mouse_genomes_project 1 169860696 169861357 - Ppox protein_coding processed_transcript MGP_AJ_T0023407.1 MGP_AJ_G0016732.1 mouse_genomes_project 1 169860943 169862022 - Ppox protein_coding retained_intron MGP_AJ_T0023408.1 MGP_AJ_G0016732.1 mouse_genomes_project 1 169861199 169861955 - Ppox protein_coding retained_intron MGP_AJ_T0000527.1 MGP_AJ_G0000468.1 mouse_genomes_project 1 78223652 78225335 - TEC TEC MGP_AJ_T0018757.1 MGP_AJ_G0015800.1 mouse_genomes_project 1 3351407 3379662 + MGP_AJ_P0018757 Rb1cc1 protein_coding protein_coding MGP_AJ_T0018758.1 MGP_AJ_G0015800.1 mouse_genomes_project 1 3351437 3384166 + MGP_AJ_P0018758 Rb1cc1 protein_coding protein_coding MGP_AJ_T0018759.1 MGP_AJ_G0015800.1 mouse_genomes_project 1 3360015 3421089 + MGP_AJ_P0018759 Rb1cc1 protein_coding protein_coding MGP_AJ_T0018760.1 MGP_AJ_G0015800.1 mouse_genomes_project 1 3360076 3376122 + Rb1cc1 protein_coding retained_intron MGP_AJ_T0018761.1 MGP_AJ_G0015800.1 mouse_genomes_project 1 3360421 3379361 + MGP_AJ_P0018761 Rb1cc1 protein_coding protein_coding MGP_AJ_T0018762.1 MGP_AJ_G0015800.1 mouse_genomes_project 1 3373420 3394848 + MGP_AJ_P0018762 Rb1cc1 protein_coding protein_coding MGP_AJ_T0018763.1 MGP_AJ_G0015800.1 mouse_genomes_project 1 3386764 3394177 + Rb1cc1 protein_coding retained_intron MGP_AJ_T0018764.1 MGP_AJ_G0015800.1 mouse_genomes_project 1 3394906 3419200 + MGP_AJ_P0018764 Rb1cc1 protein_coding nonsense_mediated_decay MGP_AJ_T0018765.1 MGP_AJ_G0015800.1 mouse_genomes_project 1 3395795 3397078 + Rb1cc1 protein_coding processed_transcript MGP_AJ_T0018766.1 MGP_AJ_G0015800.1 mouse_genomes_project 1 3395913 3411177 + Rb1cc1 protein_coding retained_intron MGP_AJ_T0018767.1 MGP_AJ_G0015800.1 mouse_genomes_project 1 3406160 3408212 + Rb1cc1 protein_coding retained_intron MGP_AJ_T0018768.1 MGP_AJ_G0015800.1 mouse_genomes_project 1 3408260 3410261 + Rb1cc1 protein_coding retained_intron MGP_AJ_T0018769.1 MGP_AJ_G0015800.1 mouse_genomes_project 1 3408290 3419199 + MGP_AJ_P0018769 Rb1cc1 protein_coding protein_coding MGP_AJ_T0018770.1 MGP_AJ_G0015800.1 mouse_genomes_project 1 3410972 3418133 + Rb1cc1 protein_coding retained_intron MGP_AJ_T0018771.1 MGP_AJ_G0015800.1 mouse_genomes_project 1 3416045 3420285 + Rb1cc1 protein_coding retained_intron MGP_AJ_T0020383.1 MGP_AJ_G0016110.1 mouse_genomes_project 1 69474954 69543071 - MGP_AJ_P0020383 Fn1 protein_coding protein_coding MGP_AJ_T0020384.1 MGP_AJ_G0016110.1 mouse_genomes_project 1 69474957 69543071 - MGP_AJ_P0020384 Fn1 protein_coding protein_coding MGP_AJ_T0020385.1 MGP_AJ_G0016110.1 mouse_genomes_project 1 69474957 69543071 - MGP_AJ_P0020385 Fn1 protein_coding protein_coding MGP_AJ_T0020386.1 MGP_AJ_G0016110.1 mouse_genomes_project 1 69474957 69543071 - MGP_AJ_P0020386 Fn1 protein_coding protein_coding MGP_AJ_T0020387.1 MGP_AJ_G0016110.1 mouse_genomes_project 1 69474958 69543071 - MGP_AJ_P0020387 Fn1 protein_coding protein_coding MGP_AJ_T0020388.1 MGP_AJ_G0016110.1 mouse_genomes_project 1 69474958 69543074 - MGP_AJ_P0020388 Fn1 protein_coding protein_coding MGP_AJ_T0020389.1 MGP_AJ_G0016110.1 mouse_genomes_project 1 69474958 69543099 - MGP_AJ_P0020389 Fn1 protein_coding protein_coding MGP_AJ_T0020390.1 MGP_AJ_G0016110.1 mouse_genomes_project 1 69474960 69498978 - Fn1 protein_coding retained_intron MGP_AJ_T0020391.1 MGP_AJ_G0016110.1 mouse_genomes_project 1 69476295 69480506 - Fn1 protein_coding retained_intron MGP_AJ_T0020392.1 MGP_AJ_G0016110.1 mouse_genomes_project 1 69479531 69489779 - MGP_AJ_P0020392 Fn1 protein_coding nonsense_mediated_decay MGP_AJ_T0020393.1 MGP_AJ_G0016110.1 mouse_genomes_project 1 69487770 69491787 - MGP_AJ_P0020393 Fn1 protein_coding nonsense_mediated_decay MGP_AJ_T0020394.1 MGP_AJ_G0016110.1 mouse_genomes_project 1 69489797 69492255 - Fn1 protein_coding retained_intron MGP_AJ_T0020395.1 MGP_AJ_G0016110.1 mouse_genomes_project 1 69493507 69513782 - Fn1 protein_coding retained_intron MGP_AJ_T0020396.1 MGP_AJ_G0016110.1 mouse_genomes_project 1 69518892 69530967 - MGP_AJ_P0020396 Fn1 protein_coding nonsense_mediated_decay MGP_AJ_T0020397.1 MGP_AJ_G0016110.1 mouse_genomes_project 1 69532503 69543060 - MGP_AJ_P0020397 Fn1 protein_coding protein_coding MGP_AJ_T0020398.1 MGP_AJ_G0016110.1 mouse_genomes_project 1 69534155 69543071 - Fn1 protein_coding retained_intron MGP_AJ_T0020399.1 MGP_AJ_G0016110.1 mouse_genomes_project 1 69535321 69543071 - MGP_AJ_P0020399 Fn1 protein_coding protein_coding MGP_AJ_T0012223.1 MGP_AJ_G0010318.1 mouse_genomes_project 1 121514930 121516228 - processed_pseudogene processed_pseudogene MGP_AJ_T0009481.1 MGP_AJ_G0007603.1 mouse_genomes_project 1 34104894 34105035 + miRNA miRNA MGP_AJ_T0101933.1 MGP_AJ_G0039785.1 mouse_genomes_project 1 168773682 168775381 - transcribed_unprocessed_pseudogene processed_transcript MGP_AJ_T0101934.1 MGP_AJ_G0039785.1 mouse_genomes_project 1 168775021 168775222 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_AJ_T0002972.1 MGP_AJ_G0002786.1 mouse_genomes_project 1 183804363 183823517 + Gm38251 antisense antisense MGP_AJ_T0098786.1 MGP_AJ_G0036770.1 mouse_genomes_project 1 43457338 43457541 + Gm23984 ribozyme ribozyme MGP_AJ_T0019261.1 MGP_AJ_G0015902.1 mouse_genomes_project 1 33725093 33830918 - MGP_AJ_P0019261 Uggt1 protein_coding protein_coding MGP_AJ_T0019262.1 MGP_AJ_G0015902.1 mouse_genomes_project 1 33728548 33750938 - Uggt1 protein_coding retained_intron MGP_AJ_T0019263.1 MGP_AJ_G0015902.1 mouse_genomes_project 1 33728552 33830774 - MGP_AJ_P0019263 Uggt1 protein_coding nonsense_mediated_decay MGP_AJ_T0019264.1 MGP_AJ_G0015902.1 mouse_genomes_project 1 33731205 33735636 - Uggt1 protein_coding retained_intron MGP_AJ_T0019265.1 MGP_AJ_G0015902.1 mouse_genomes_project 1 33746855 33758526 - MGP_AJ_P0019265 Uggt1 protein_coding nonsense_mediated_decay MGP_AJ_T0019266.1 MGP_AJ_G0015902.1 mouse_genomes_project 1 33747334 33767639 - MGP_AJ_P0019266 Uggt1 protein_coding nonsense_mediated_decay MGP_AJ_T0019267.1 MGP_AJ_G0015902.1 mouse_genomes_project 1 33748480 33750068 - Uggt1 protein_coding retained_intron MGP_AJ_T0019268.1 MGP_AJ_G0015902.1 mouse_genomes_project 1 33763687 33830720 - Uggt1 protein_coding retained_intron MGP_AJ_T0019269.1 MGP_AJ_G0015902.1 mouse_genomes_project 1 33770894 33794993 - MGP_AJ_P0019269 Uggt1 protein_coding nonsense_mediated_decay MGP_AJ_T0019270.1 MGP_AJ_G0015902.1 mouse_genomes_project 1 33780985 33793166 - Uggt1 protein_coding retained_intron MGP_AJ_T0019271.1 MGP_AJ_G0015902.1 mouse_genomes_project 1 33830251 33831333 - Uggt1 protein_coding retained_intron MGP_AJ_T0019432.1 MGP_AJ_G0015930.1 mouse_genomes_project 1 35592684 35594951 - Lyg1 protein_coding processed_transcript MGP_AJ_T0019433.1 MGP_AJ_G0015930.1 mouse_genomes_project 1 35592684 35604478 - MGP_AJ_P0019433 Lyg1 protein_coding protein_coding MGP_AJ_T0019434.1 MGP_AJ_G0015930.1 mouse_genomes_project 1 35592686 35604478 - MGP_AJ_P0019434 Lyg1 protein_coding protein_coding MGP_AJ_T0005943.1 MGP_AJ_G0004982.1 mouse_genomes_project 1 152467069 152469891 - Gm29291 lincRNA lincRNA MGP_AJ_T0005944.1 MGP_AJ_G0004982.1 mouse_genomes_project 1 152467225 152469895 - Gm29291 lincRNA lincRNA MGP_AJ_T0000691.1 MGP_AJ_G0000630.1 mouse_genomes_project 1 155052968 155060041 + TEC TEC MGP_AJ_T0099188.1 MGP_AJ_G0037154.1 mouse_genomes_project 1 96332457 96332564 + Gm24465 snRNA snRNA MGP_AJ_T0000660.1 MGP_AJ_G0000599.1 mouse_genomes_project 1 137639463 137642094 + TEC TEC MGP_AJ_T0002926.1 MGP_AJ_G0002751.1 mouse_genomes_project 1 159640896 159645674 - 4930469G21Rik antisense antisense MGP_AJ_T0002927.1 MGP_AJ_G0002751.1 mouse_genomes_project 1 159643181 159645674 - 4930469G21Rik antisense antisense MGP_AJ_T0012205.1 MGP_AJ_G0010300.1 mouse_genomes_project 1 116847121 116848109 - processed_pseudogene processed_pseudogene MGP_AJ_T0022461.1 MGP_AJ_G0016545.1 mouse_genomes_project 1 142164706 142193875 + Glrx2 protein_coding retained_intron MGP_AJ_T0022462.1 MGP_AJ_G0016545.1 mouse_genomes_project 1 142184634 142193877 + MGP_AJ_P0022462 Glrx2 protein_coding protein_coding MGP_AJ_T0022463.1 MGP_AJ_G0016545.1 mouse_genomes_project 1 142185162 142189839 + Glrx2 protein_coding processed_transcript MGP_AJ_T0022464.1 MGP_AJ_G0016545.1 mouse_genomes_project 1 142185162 142196500 + MGP_AJ_P0022464 Glrx2 protein_coding protein_coding MGP_AJ_T0022465.1 MGP_AJ_G0016545.1 mouse_genomes_project 1 142185171 142190205 + Glrx2 protein_coding retained_intron MGP_AJ_T0022466.1 MGP_AJ_G0016545.1 mouse_genomes_project 1 142185215 142189942 + Glrx2 protein_coding processed_transcript MGP_AJ_T0022467.1 MGP_AJ_G0016545.1 mouse_genomes_project 1 142185220 142193877 + MGP_AJ_P0022467 Glrx2 protein_coding protein_coding MGP_AJ_T0022468.1 MGP_AJ_G0016545.1 mouse_genomes_project 1 142185223 142192700 + MGP_AJ_P0022468 Glrx2 protein_coding protein_coding MGP_AJ_T0022469.1 MGP_AJ_G0016545.1 mouse_genomes_project 1 142185251 142194410 + MGP_AJ_P0022469 Glrx2 protein_coding nonsense_mediated_decay MGP_AJ_T0022470.1 MGP_AJ_G0016545.1 mouse_genomes_project 1 142185980 142197632 + MGP_AJ_P0022470 Glrx2 protein_coding protein_coding MGP_AJ_T0022471.1 MGP_AJ_G0016545.1 mouse_genomes_project 1 142190514 142192765 + Glrx2 protein_coding retained_intron MGP_AJ_T0022472.1 MGP_AJ_G0016545.1 mouse_genomes_project 1 142192085 142193787 + Glrx2 protein_coding retained_intron MGP_AJ_T0022473.1 MGP_AJ_G0016545.1 mouse_genomes_project 1 142193071 142193876 + Glrx2 protein_coding processed_transcript MGP_AJ_T0000454.1 MGP_AJ_G0000395.1 mouse_genomes_project 1 37770026 37773097 + TEC TEC MGP_AJ_T0022358.1 MGP_AJ_G0016522.1 mouse_genomes_project 1 134767905 134768982 - MGP_AJ_P0022358 Gpr25 protein_coding protein_coding MGP_AJ_T0020565.1 MGP_AJ_G0016144.1 mouse_genomes_project 1 72724386 72734386 - MGP_AJ_P0020565 Prkag3 protein_coding nonsense_mediated_decay MGP_AJ_T0020566.1 MGP_AJ_G0016144.1 mouse_genomes_project 1 72725649 72734652 - MGP_AJ_P0020566 Prkag3 protein_coding protein_coding MGP_AJ_T0020567.1 MGP_AJ_G0016144.1 mouse_genomes_project 1 72725649 72734008 - MGP_AJ_P0020567 Prkag3 protein_coding protein_coding MGP_AJ_T0020568.1 MGP_AJ_G0016144.1 mouse_genomes_project 1 72726911 72734298 - MGP_AJ_P0020568 Prkag3 protein_coding nonsense_mediated_decay MGP_AJ_T0020569.1 MGP_AJ_G0016144.1 mouse_genomes_project 1 72732948 72734335 - MGP_AJ_P0020569 Prkag3 protein_coding nonsense_mediated_decay MGP_AJ_T0021860.1 MGP_AJ_G0016410.1 mouse_genomes_project 1 126576675 126592991 + MGP_AJ_P0021860 Ubxn4 protein_coding protein_coding MGP_AJ_T0021861.1 MGP_AJ_G0016410.1 mouse_genomes_project 1 126576873 126612858 + MGP_AJ_P0021861 Ubxn4 protein_coding protein_coding MGP_AJ_T0021862.1 MGP_AJ_G0016410.1 mouse_genomes_project 1 126592959 126606646 + Ubxn4 protein_coding retained_intron MGP_AJ_T0021863.1 MGP_AJ_G0016410.1 mouse_genomes_project 1 126608106 126610500 + Ubxn4 protein_coding retained_intron MGP_AJ_T0021870.1 MGP_AJ_G0016413.1 mouse_genomes_project 1 126699382 126754621 - MGP_AJ_P0021870 Dars protein_coding protein_coding MGP_AJ_T0021871.1 MGP_AJ_G0016413.1 mouse_genomes_project 1 126712084 126716683 - Dars protein_coding retained_intron MGP_AJ_T0021872.1 MGP_AJ_G0016413.1 mouse_genomes_project 1 126749379 126754630 - MGP_AJ_P0021872 Dars protein_coding protein_coding MGP_AJ_T0009553.1 MGP_AJ_G0007675.1 mouse_genomes_project 1 169607858 169607999 - miRNA miRNA MGP_AJ_T0000442.1 MGP_AJ_G0000383.1 mouse_genomes_project 1 34072161 34074321 + TEC TEC MGP_AJ_T0100453.1 MGP_AJ_G0038419.1 mouse_genomes_project 1 106299595 106299727 + Gm22438 snoRNA snoRNA MGP_AJ_T0023436.1 MGP_AJ_G0016736.1 mouse_genomes_project 1 169913753 169921881 - MGP_AJ_P0023436 Nit1 protein_coding protein_coding MGP_AJ_T0023437.1 MGP_AJ_G0016736.1 mouse_genomes_project 1 169916313 169921899 - MGP_AJ_P0023437 Nit1 protein_coding protein_coding MGP_AJ_T0023438.1 MGP_AJ_G0016736.1 mouse_genomes_project 1 169917072 169921893 - Nit1 protein_coding retained_intron MGP_AJ_T0023439.1 MGP_AJ_G0016736.1 mouse_genomes_project 1 169917983 169921898 - MGP_AJ_P0023439 Nit1 protein_coding protein_coding MGP_AJ_T0023440.1 MGP_AJ_G0016736.1 mouse_genomes_project 1 169919571 169920174 - Nit1 protein_coding retained_intron MGP_AJ_T0005833.1 MGP_AJ_G0004891.1 mouse_genomes_project 1 88651436 88652544 - Gm28722 lincRNA lincRNA MGP_AJ_T0102143.1 MGP_AJ_G0039887.1 mouse_genomes_project 1 18768697 18769809 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0012328.1 MGP_AJ_G0010423.1 mouse_genomes_project 1 167934681 167935023 - processed_pseudogene processed_pseudogene MGP_AJ_T0100416.1 MGP_AJ_G0038382.1 mouse_genomes_project 1 37195324 37195643 + Gm24826 snoRNA snoRNA MGP_AJ_T0012380.1 MGP_AJ_G0010475.1 mouse_genomes_project 1 193694817 193695175 - processed_pseudogene processed_pseudogene MGP_AJ_T0021177.1 MGP_AJ_G0016258.1 mouse_genomes_project 1 86163432 86334105 + MGP_AJ_P0021177 protein_coding protein_coding MGP_AJ_T0021178.1 MGP_AJ_G0016258.1 mouse_genomes_project 1 86167036 86334105 + MGP_AJ_P0021178 protein_coding protein_coding MGP_AJ_T0023522.1 MGP_AJ_G0016758.1 mouse_genomes_project 1 170714815 170763051 + MGP_AJ_P0023522 Dcaf8 protein_coding nonsense_mediated_decay MGP_AJ_T0023523.1 MGP_AJ_G0016758.1 mouse_genomes_project 1 170714820 170757208 + Dcaf8 protein_coding retained_intron MGP_AJ_T0023524.1 MGP_AJ_G0016758.1 mouse_genomes_project 1 170714849 170763763 + MGP_AJ_P0023524 Dcaf8 protein_coding protein_coding MGP_AJ_T0023525.1 MGP_AJ_G0016758.1 mouse_genomes_project 1 170714871 170758434 + Dcaf8 protein_coding retained_intron MGP_AJ_T0023526.1 MGP_AJ_G0016758.1 mouse_genomes_project 1 170714873 170763722 + MGP_AJ_P0023526 Dcaf8 protein_coding protein_coding MGP_AJ_T0023527.1 MGP_AJ_G0016758.1 mouse_genomes_project 1 170714909 170764645 + MGP_AJ_P0023527 Dcaf8 protein_coding protein_coding MGP_AJ_T0023528.1 MGP_AJ_G0016758.1 mouse_genomes_project 1 170715676 170758434 + Dcaf8 protein_coding retained_intron MGP_AJ_T0023529.1 MGP_AJ_G0016758.1 mouse_genomes_project 1 170742453 170744757 + Dcaf8 protein_coding retained_intron MGP_AJ_T0023530.1 MGP_AJ_G0016758.1 mouse_genomes_project 1 170742557 170761209 + MGP_AJ_P0023530 Dcaf8 protein_coding nonsense_mediated_decay MGP_AJ_T0023531.1 MGP_AJ_G0016758.1 mouse_genomes_project 1 170746830 170751348 + Dcaf8 protein_coding retained_intron MGP_AJ_T0023532.1 MGP_AJ_G0016758.1 mouse_genomes_project 1 170756007 170765262 + MGP_AJ_P0023532 Dcaf8 protein_coding protein_coding MGP_AJ_T0002894.1 MGP_AJ_G0002723.1 mouse_genomes_project 1 133313908 133326202 + Gm28892 antisense antisense MGP_AJ_T0005859.1 MGP_AJ_G0004914.1 mouse_genomes_project 1 103483636 103494545 + Gm29012 lincRNA lincRNA MGP_AJ_T0021132.1 MGP_AJ_G0016250.1 mouse_genomes_project 1 85784460 85800497 + MGP_AJ_P0021132 Atg16l1 protein_coding protein_coding MGP_AJ_T0021133.1 MGP_AJ_G0016250.1 mouse_genomes_project 1 85784603 85821248 + MGP_AJ_P0021133 Atg16l1 protein_coding protein_coding MGP_AJ_T0021134.1 MGP_AJ_G0016250.1 mouse_genomes_project 1 85784646 85797896 + Atg16l1 protein_coding retained_intron MGP_AJ_T0021135.1 MGP_AJ_G0016250.1 mouse_genomes_project 1 85784666 85815020 + Atg16l1 protein_coding retained_intron MGP_AJ_T0021136.1 MGP_AJ_G0016250.1 mouse_genomes_project 1 85784666 85821242 + MGP_AJ_P0021136 Atg16l1 protein_coding protein_coding MGP_AJ_T0021137.1 MGP_AJ_G0016250.1 mouse_genomes_project 1 85784676 85821245 + MGP_AJ_P0021137 Atg16l1 protein_coding protein_coding MGP_AJ_T0021138.1 MGP_AJ_G0016250.1 mouse_genomes_project 1 85784678 85821245 + Atg16l1 protein_coding retained_intron MGP_AJ_T0021139.1 MGP_AJ_G0016250.1 mouse_genomes_project 1 85784683 85796520 + Atg16l1 protein_coding retained_intron MGP_AJ_T0021140.1 MGP_AJ_G0016250.1 mouse_genomes_project 1 85795437 85803972 + Atg16l1 protein_coding retained_intron MGP_AJ_T0021141.1 MGP_AJ_G0016250.1 mouse_genomes_project 1 85804394 85807792 + Atg16l1 protein_coding retained_intron MGP_AJ_T0021142.1 MGP_AJ_G0016250.1 mouse_genomes_project 1 85807291 85817382 + Atg16l1 protein_coding retained_intron MGP_AJ_T0024218.1 MGP_AJ_G0016926.1 mouse_genomes_project 1 190626733 190693801 + MGP_AJ_P0024218 Lpgat1 protein_coding protein_coding MGP_AJ_T0024219.1 MGP_AJ_G0016926.1 mouse_genomes_project 1 190626733 190628297 + MGP_AJ_P0024219 Lpgat1 protein_coding protein_coding MGP_AJ_T0024220.1 MGP_AJ_G0016926.1 mouse_genomes_project 1 190626926 190628685 + Lpgat1 protein_coding retained_intron MGP_AJ_T0024221.1 MGP_AJ_G0016926.1 mouse_genomes_project 1 190627288 190689523 + MGP_AJ_P0024221 Lpgat1 protein_coding protein_coding MGP_AJ_T0024222.1 MGP_AJ_G0016926.1 mouse_genomes_project 1 190627420 190669737 + MGP_AJ_P0024222 Lpgat1 protein_coding protein_coding MGP_AJ_T0022613.1 MGP_AJ_G0016572.1 mouse_genomes_project 1 151193008 151202062 + MGP_AJ_P0022613 Arpc5 protein_coding protein_coding MGP_AJ_T0022614.1 MGP_AJ_G0016572.1 mouse_genomes_project 1 151193008 151202062 + MGP_AJ_P0022614 Arpc5 protein_coding protein_coding MGP_AJ_T0022615.1 MGP_AJ_G0016572.1 mouse_genomes_project 1 151194963 151200860 + Arpc5 protein_coding retained_intron MGP_AJ_T0017037.1 MGP_AJ_G0015087.1 mouse_genomes_project 1 134920060 134923664 - 9230116N13Rik processed_transcript antisense MGP_AJ_T0017038.1 MGP_AJ_G0015087.1 mouse_genomes_project 1 134920987 134923639 - 9230116N13Rik processed_transcript retained_intron MGP_AJ_T0000761.1 MGP_AJ_G0000699.1 mouse_genomes_project 1 179021927 179024592 - TEC TEC MGP_AJ_T0019320.1 MGP_AJ_G0015912.1 mouse_genomes_project 1 34146988 34156692 - MGP_AJ_P0019320 Sema4c protein_coding protein_coding MGP_AJ_T0019321.1 MGP_AJ_G0015912.1 mouse_genomes_project 1 34146991 34156692 - MGP_AJ_P0019321 Sema4c protein_coding protein_coding MGP_AJ_T0019322.1 MGP_AJ_G0015912.1 mouse_genomes_project 1 34146991 34155869 - MGP_AJ_P0019322 Sema4c protein_coding protein_coding MGP_AJ_T0019323.1 MGP_AJ_G0015912.1 mouse_genomes_project 1 34146991 34155900 - MGP_AJ_P0019323 Sema4c protein_coding protein_coding MGP_AJ_T0019324.1 MGP_AJ_G0015912.1 mouse_genomes_project 1 34150072 34151241 - Sema4c protein_coding retained_intron MGP_AJ_T0019325.1 MGP_AJ_G0015912.1 mouse_genomes_project 1 34151570 34152573 - Sema4c protein_coding retained_intron MGP_AJ_T0019326.1 MGP_AJ_G0015912.1 mouse_genomes_project 1 34152742 34155877 - MGP_AJ_P0019326 Sema4c protein_coding protein_coding MGP_AJ_T0019327.1 MGP_AJ_G0015912.1 mouse_genomes_project 1 34154274 34156593 - MGP_AJ_P0019327 Sema4c protein_coding protein_coding MGP_AJ_T0020101.1 MGP_AJ_G0016057.1 mouse_genomes_project 1 58020119 58075203 + MGP_AJ_P0020101 Carf protein_coding nonsense_mediated_decay MGP_AJ_T0020102.1 MGP_AJ_G0016057.1 mouse_genomes_project 1 58020136 58031892 + Carf protein_coding retained_intron MGP_AJ_T0020103.1 MGP_AJ_G0016057.1 mouse_genomes_project 1 58020136 58050030 + MGP_AJ_P0020103 Carf protein_coding protein_coding MGP_AJ_T0020104.1 MGP_AJ_G0016057.1 mouse_genomes_project 1 58024076 58027311 + Carf protein_coding retained_intron MGP_AJ_T0020105.1 MGP_AJ_G0016057.1 mouse_genomes_project 1 58025510 58078606 + MGP_AJ_P0020105 Carf protein_coding unknown_likely_coding MGP_AJ_T0020106.1 MGP_AJ_G0016057.1 mouse_genomes_project 1 58030932 58074971 + MGP_AJ_P0020106 Carf protein_coding protein_coding MGP_AJ_T0020107.1 MGP_AJ_G0016057.1 mouse_genomes_project 1 58030932 58074971 + MGP_AJ_P0020107 Carf protein_coding nonsense_mediated_decay MGP_AJ_T0020108.1 MGP_AJ_G0016057.1 mouse_genomes_project 1 58063966 58066382 + Carf protein_coding retained_intron MGP_AJ_T0020109.1 MGP_AJ_G0016057.1 mouse_genomes_project 1 58065618 58072198 + MGP_AJ_P0020109 Carf protein_coding nonsense_mediated_decay MGP_AJ_T0011917.1 MGP_AJ_G0010012.1 mouse_genomes_project 1 19466262 19466814 - processed_pseudogene processed_pseudogene MGP_AJ_T0022427.1 MGP_AJ_G0016535.1 mouse_genomes_project 1 137908060 137927630 + MGP_AJ_P0022427 Zbtb41 protein_coding protein_coding MGP_AJ_T0022428.1 MGP_AJ_G0016535.1 mouse_genomes_project 1 137908154 137938778 + MGP_AJ_P0022428 Zbtb41 protein_coding protein_coding MGP_AJ_T0022429.1 MGP_AJ_G0016535.1 mouse_genomes_project 1 137909426 137934956 + MGP_AJ_P0022429 Zbtb41 protein_coding nonsense_mediated_decay MGP_AJ_T0000383.1 MGP_AJ_G0000327.1 mouse_genomes_project 1 11422575 11426180 - TEC TEC MGP_AJ_T0100447.1 MGP_AJ_G0038413.1 mouse_genomes_project 1 95030333 95030461 + Gm26078 snoRNA snoRNA MGP_AJ_T0012047.1 MGP_AJ_G0010142.1 mouse_genomes_project 1 57049902 57051285 + processed_pseudogene processed_pseudogene MGP_AJ_T0005827.1 MGP_AJ_G0004885.1 mouse_genomes_project 1 87213309 87220276 + 1700067G17Rik lincRNA lincRNA MGP_AJ_T0020629.1 MGP_AJ_G0016159.1 mouse_genomes_project 1 73114320 73117706 + Ankzf1 protein_coding retained_intron MGP_AJ_T0020630.1 MGP_AJ_G0016159.1 mouse_genomes_project 1 73114329 73118156 + Ankzf1 protein_coding retained_intron MGP_AJ_T0020631.1 MGP_AJ_G0016159.1 mouse_genomes_project 1 73114329 73122009 + Ankzf1 protein_coding retained_intron MGP_AJ_T0020632.1 MGP_AJ_G0016159.1 mouse_genomes_project 1 73114329 73122009 + Ankzf1 protein_coding retained_intron MGP_AJ_T0020633.1 MGP_AJ_G0016159.1 mouse_genomes_project 1 73114329 73122009 + MGP_AJ_P0020633 Ankzf1 protein_coding protein_coding MGP_AJ_T0020634.1 MGP_AJ_G0016159.1 mouse_genomes_project 1 73114329 73122009 + MGP_AJ_P0020634 Ankzf1 protein_coding nonsense_mediated_decay MGP_AJ_T0020635.1 MGP_AJ_G0016159.1 mouse_genomes_project 1 73114361 73118156 + MGP_AJ_P0020635 Ankzf1 protein_coding protein_coding MGP_AJ_T0020636.1 MGP_AJ_G0016159.1 mouse_genomes_project 1 73118314 73119278 + Ankzf1 protein_coding retained_intron MGP_AJ_T0005822.1 MGP_AJ_G0004881.1 mouse_genomes_project 1 86747525 86758043 + Gm19589 lincRNA lincRNA MGP_AJ_T0021213.1 MGP_AJ_G0016273.1 mouse_genomes_project 1 88148527 88214159 - MGP_AJ_P0021213 Asb18 protein_coding protein_coding MGP_AJ_T0021214.1 MGP_AJ_G0016273.1 mouse_genomes_project 1 88151394 88214248 - MGP_AJ_P0021214 Asb18 protein_coding protein_coding MGP_AJ_T0021215.1 MGP_AJ_G0016273.1 mouse_genomes_project 1 88151481 88214159 - MGP_AJ_P0021215 Asb18 protein_coding nonsense_mediated_decay MGP_AJ_T0021216.1 MGP_AJ_G0016273.1 mouse_genomes_project 1 88151482 88214159 - MGP_AJ_P0021216 Asb18 protein_coding nonsense_mediated_decay MGP_AJ_T0100468.1 MGP_AJ_G0038434.1 mouse_genomes_project 1 142228536 142228671 + Gm25663 snoRNA snoRNA MGP_AJ_T0019762.1 MGP_AJ_G0015993.1 mouse_genomes_project 1 50546912 50580920 - MGP_AJ_P0019762 Inpp1 protein_coding protein_coding MGP_AJ_T0019763.1 MGP_AJ_G0015993.1 mouse_genomes_project 1 50553379 50563200 - MGP_AJ_P0019763 Inpp1 protein_coding nonsense_mediated_decay MGP_AJ_T0019764.1 MGP_AJ_G0015993.1 mouse_genomes_project 1 50553767 50558760 - Inpp1 protein_coding retained_intron MGP_AJ_T0019765.1 MGP_AJ_G0015993.1 mouse_genomes_project 1 50558376 50580800 - MGP_AJ_P0019765 Inpp1 protein_coding protein_coding MGP_AJ_T0019766.1 MGP_AJ_G0015993.1 mouse_genomes_project 1 50560690 50580683 - Inpp1 protein_coding retained_intron MGP_AJ_T0019767.1 MGP_AJ_G0015993.1 mouse_genomes_project 1 50560777 50564083 - MGP_AJ_P0019767 Inpp1 protein_coding protein_coding MGP_AJ_T0011981.1 MGP_AJ_G0010076.1 mouse_genomes_project 1 39824991 39826263 + processed_pseudogene processed_pseudogene MGP_AJ_T0102149.1 MGP_AJ_G0039892.1 mouse_genomes_project 1 56707090 56779808 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0019165.1 MGP_AJ_G0015885.1 mouse_genomes_project 1 31046228 31267585 - MGP_AJ_P0019165 Prim2 protein_coding protein_coding MGP_AJ_T0019166.1 MGP_AJ_G0015885.1 mouse_genomes_project 1 31071233 31220164 - Prim2 protein_coding retained_intron MGP_AJ_T0019167.1 MGP_AJ_G0015885.1 mouse_genomes_project 1 31218907 31221346 - Prim2 protein_coding retained_intron MGP_AJ_T0100460.1 MGP_AJ_G0038426.1 mouse_genomes_project 1 125713986 125714095 + Gm23734 snoRNA snoRNA MGP_AJ_T0021964.1 MGP_AJ_G0016438.1 mouse_genomes_project 1 130041586 130054978 + MGP_AJ_P0021964 Avpr1b protein_coding protein_coding MGP_AJ_T0021965.1 MGP_AJ_G0016438.1 mouse_genomes_project 1 130042070 130052732 + MGP_AJ_P0021965 Avpr1b protein_coding protein_coding MGP_AJ_T0000422.1 MGP_AJ_G0000364.1 mouse_genomes_project 1 28348250 28351129 - TEC TEC MGP_AJ_T0002799.1 MGP_AJ_G0002654.1 mouse_genomes_project 1 42433632 42438898 - 4930521E06Rik antisense antisense MGP_AJ_T0002852.1 MGP_AJ_G0002694.1 mouse_genomes_project 1 90785907 90786283 - 1700054K02Rik antisense antisense MGP_AJ_T0022040.1 MGP_AJ_G0016455.1 mouse_genomes_project 1 130861509 130910625 + MGP_AJ_P0022040 Dstyk protein_coding protein_coding MGP_AJ_T0022041.1 MGP_AJ_G0016455.1 mouse_genomes_project 1 130861558 130907762 + MGP_AJ_P0022041 Dstyk protein_coding protein_coding MGP_AJ_T0022042.1 MGP_AJ_G0016455.1 mouse_genomes_project 1 130862331 130877904 + Dstyk protein_coding processed_transcript MGP_AJ_T0022043.1 MGP_AJ_G0016455.1 mouse_genomes_project 1 130893112 130895326 + MGP_AJ_P0022043 Dstyk protein_coding protein_coding MGP_AJ_T0022044.1 MGP_AJ_G0016455.1 mouse_genomes_project 1 130898300 130901375 + Dstyk protein_coding retained_intron MGP_AJ_T0022045.1 MGP_AJ_G0016455.1 mouse_genomes_project 1 130906078 130907026 + Dstyk protein_coding retained_intron MGP_AJ_T0000692.1 MGP_AJ_G0000631.1 mouse_genomes_project 1 155152031 155152432 + TEC TEC MGP_AJ_T0012256.1 MGP_AJ_G0010351.1 mouse_genomes_project 1 137617696 137618471 - processed_pseudogene processed_pseudogene MGP_AJ_T0012206.1 MGP_AJ_G0010301.1 mouse_genomes_project 1 117017941 117018255 - processed_pseudogene processed_pseudogene MGP_AJ_T0011964.1 MGP_AJ_G0010059.1 mouse_genomes_project 1 32241357 32242003 - processed_pseudogene processed_pseudogene MGP_AJ_T0000746.1 MGP_AJ_G0000685.1 mouse_genomes_project 1 175517680 175519099 - TEC TEC MGP_AJ_T0011936.1 MGP_AJ_G0010031.1 mouse_genomes_project 1 26404846 26405153 + processed_pseudogene processed_pseudogene MGP_AJ_T0005759.1 MGP_AJ_G0004834.1 mouse_genomes_project 1 61169280 61175547 - Gm11608 lincRNA lincRNA MGP_AJ_T0005760.1 MGP_AJ_G0004834.1 mouse_genomes_project 1 61169280 61175552 - Gm11608 lincRNA lincRNA MGP_AJ_T0011965.1 MGP_AJ_G0010060.1 mouse_genomes_project 1 32348324 32348472 + processed_pseudogene processed_pseudogene MGP_AJ_T0023654.1 MGP_AJ_G0016807.1 mouse_genomes_project 1 172990556 172991644 - MGP_AJ_P0023654 Olfr419 protein_coding protein_coding MGP_AJ_T0011990.1 MGP_AJ_G0010085.1 mouse_genomes_project 1 42021129 42022118 - processed_pseudogene processed_pseudogene MGP_AJ_T0020052.1 MGP_AJ_G0016050.1 mouse_genomes_project 1 57413113 57537447 + MGP_AJ_P0020052 Gm973 protein_coding protein_coding MGP_AJ_T0020053.1 MGP_AJ_G0016050.1 mouse_genomes_project 1 57421914 57424592 + MGP_AJ_P0020053 Gm973 protein_coding protein_coding MGP_AJ_T0020054.1 MGP_AJ_G0016050.1 mouse_genomes_project 1 57422278 57500002 + MGP_AJ_P0020054 Gm973 protein_coding unknown_likely_coding MGP_AJ_T0020055.1 MGP_AJ_G0016050.1 mouse_genomes_project 1 57441820 57453759 + Gm973 protein_coding retained_intron MGP_AJ_T0020056.1 MGP_AJ_G0016050.1 mouse_genomes_project 1 57446277 57466082 + Gm973 protein_coding processed_transcript MGP_AJ_T0020057.1 MGP_AJ_G0016050.1 mouse_genomes_project 1 57455472 57469913 + Gm973 protein_coding retained_intron MGP_AJ_T0020059.1 MGP_AJ_G0016050.1 mouse_genomes_project 1 57509715 57531199 + Gm973 protein_coding processed_transcript MGP_AJ_T0020060.1 MGP_AJ_G0016050.1 mouse_genomes_project 1 57509749 57533241 + Gm973 protein_coding processed_transcript MGP_AJ_T0020061.1 MGP_AJ_G0016050.1 mouse_genomes_project 1 57522351 57531181 + Gm973 protein_coding processed_transcript MGP_AJ_T0020062.1 MGP_AJ_G0016050.1 mouse_genomes_project 1 57533260 57539355 + MGP_AJ_P0020062 Gm973 protein_coding protein_coding MGP_AJ_T0012066.1 MGP_AJ_G0010161.1 mouse_genomes_project 1 60018946 60019205 - processed_pseudogene processed_pseudogene MGP_AJ_T0024102.1 MGP_AJ_G0016904.1 mouse_genomes_project 1 187131467 187227649 + Ush2a protein_coding retained_intron MGP_AJ_T0024103.1 MGP_AJ_G0016904.1 mouse_genomes_project 1 187131479 187323624 + Ush2a protein_coding retained_intron MGP_AJ_T0024104.1 MGP_AJ_G0016904.1 mouse_genomes_project 1 187132478 187838679 + MGP_AJ_P0024104 Ush2a protein_coding protein_coding MGP_AJ_T0024105.1 MGP_AJ_G0016904.1 mouse_genomes_project 1 187411737 187551215 + Ush2a protein_coding retained_intron MGP_AJ_T0024106.1 MGP_AJ_G0016904.1 mouse_genomes_project 1 187827270 187838603 + MGP_AJ_P0024106 Ush2a protein_coding protein_coding MGP_AJ_T0002920.1 MGP_AJ_G0002745.1 mouse_genomes_project 1 155978285 155992733 - Gm15486 antisense antisense MGP_AJ_T0011844.1 MGP_AJ_G0009939.1 mouse_genomes_project 1 1631005 1635171 + processed_pseudogene processed_pseudogene MGP_AJ_T0000458.1 MGP_AJ_G0000399.1 mouse_genomes_project 1 41192731 41195226 + TEC TEC MGP_AJ_T0000377.1 MGP_AJ_G0000321.1 mouse_genomes_project 1 10624853 10625549 - TEC TEC MGP_AJ_T0012364.1 MGP_AJ_G0010459.1 mouse_genomes_project 1 185939212 185939537 - processed_pseudogene processed_pseudogene MGP_AJ_T0018793.1 MGP_AJ_G0015804.1 mouse_genomes_project 1 5621283 6592138 - MGP_AJ_P0018793 Sntg1 protein_coding protein_coding MGP_AJ_T0018794.1 MGP_AJ_G0015804.1 mouse_genomes_project 1 5621283 6591473 - MGP_AJ_P0018794 Sntg1 protein_coding protein_coding MGP_AJ_T0018795.1 MGP_AJ_G0015804.1 mouse_genomes_project 1 5621283 6591764 - MGP_AJ_P0018795 Sntg1 protein_coding protein_coding MGP_AJ_T0018796.1 MGP_AJ_G0015804.1 mouse_genomes_project 1 5622486 6592779 - MGP_AJ_P0018796 Sntg1 protein_coding nonsense_mediated_decay MGP_AJ_T0018797.1 MGP_AJ_G0015804.1 mouse_genomes_project 1 5622991 5742495 - Sntg1 protein_coding processed_transcript MGP_AJ_T0018798.1 MGP_AJ_G0015804.1 mouse_genomes_project 1 5623233 5742454 - Sntg1 protein_coding processed_transcript MGP_AJ_T0018799.1 MGP_AJ_G0015804.1 mouse_genomes_project 1 5623283 6085031 - MGP_AJ_P0018799 Sntg1 protein_coding protein_coding MGP_AJ_T0018800.1 MGP_AJ_G0015804.1 mouse_genomes_project 1 5623283 6085031 - MGP_AJ_P0018800 Sntg1 protein_coding unknown_likely_coding MGP_AJ_T0018801.1 MGP_AJ_G0015804.1 mouse_genomes_project 1 5947559 6592182 - MGP_AJ_P0018801 Sntg1 protein_coding nonsense_mediated_decay MGP_AJ_T0018802.1 MGP_AJ_G0015804.1 mouse_genomes_project 1 6053338 6592409 - Sntg1 protein_coding retained_intron MGP_AJ_T0018803.1 MGP_AJ_G0015804.1 mouse_genomes_project 1 6250076 6252188 - Sntg1 protein_coding retained_intron MGP_AJ_T0018804.1 MGP_AJ_G0015804.1 mouse_genomes_project 1 6250337 6591126 - Sntg1 protein_coding processed_transcript MGP_AJ_T0011958.1 MGP_AJ_G0010053.1 mouse_genomes_project 1 31971334 31972967 + processed_pseudogene processed_pseudogene MGP_AJ_T0024041.1 MGP_AJ_G0016890.1 mouse_genomes_project 1 183752433 183764478 - MGP_AJ_P0024041 C130074G19Rik protein_coding protein_coding MGP_AJ_T0021705.1 MGP_AJ_G0016380.1 mouse_genomes_project 1 117915638 118020634 - MGP_AJ_P0021705 Epb41l5 protein_coding protein_coding MGP_AJ_T0021706.1 MGP_AJ_G0016380.1 mouse_genomes_project 1 117918729 118020632 - MGP_AJ_P0021706 Epb41l5 protein_coding protein_coding MGP_AJ_T0021707.1 MGP_AJ_G0016380.1 mouse_genomes_project 1 117924833 117970658 - Epb41l5 protein_coding retained_intron MGP_AJ_T0021708.1 MGP_AJ_G0016380.1 mouse_genomes_project 1 117948489 117950777 - Epb41l5 protein_coding retained_intron MGP_AJ_T0021709.1 MGP_AJ_G0016380.1 mouse_genomes_project 1 117961094 118020698 - MGP_AJ_P0021709 Epb41l5 protein_coding protein_coding MGP_AJ_T0021710.1 MGP_AJ_G0016380.1 mouse_genomes_project 1 117965426 118020315 - MGP_AJ_P0021710 Epb41l5 protein_coding protein_coding MGP_AJ_T0021711.1 MGP_AJ_G0016380.1 mouse_genomes_project 1 117965794 117969593 - Epb41l5 protein_coding retained_intron MGP_AJ_T0021712.1 MGP_AJ_G0016380.1 mouse_genomes_project 1 117988884 118005235 - Epb41l5 protein_coding retained_intron MGP_AJ_T0021713.1 MGP_AJ_G0016380.1 mouse_genomes_project 1 117993178 118020322 - MGP_AJ_P0021713 Epb41l5 protein_coding protein_coding MGP_AJ_T0023257.1 MGP_AJ_G0016696.1 mouse_genomes_project 1 166110991 166152073 + MGP_AJ_P0023257 Rxrg protein_coding protein_coding MGP_AJ_T0022240.1 MGP_AJ_G0016499.1 mouse_genomes_project 1 133625692 133636946 + MGP_AJ_P0022240 Ptpn7 protein_coding protein_coding MGP_AJ_T0022241.1 MGP_AJ_G0016499.1 mouse_genomes_project 1 133625717 133638160 + MGP_AJ_P0022241 Ptpn7 protein_coding protein_coding MGP_AJ_T0022242.1 MGP_AJ_G0016499.1 mouse_genomes_project 1 133626300 133632934 + Ptpn7 protein_coding retained_intron MGP_AJ_T0022243.1 MGP_AJ_G0016499.1 mouse_genomes_project 1 133626301 133637801 + MGP_AJ_P0022243 Ptpn7 protein_coding protein_coding MGP_AJ_T0024348.1 MGP_AJ_G0016948.1 mouse_genomes_project 1 194009169 194050263 - MGP_AJ_P0024348 Cr2 protein_coding protein_coding MGP_AJ_T0024349.1 MGP_AJ_G0016948.1 mouse_genomes_project 1 194009169 194050262 - MGP_AJ_P0024349 Cr2 protein_coding protein_coding MGP_AJ_T0024350.1 MGP_AJ_G0016948.1 mouse_genomes_project 1 194009175 194032774 - MGP_AJ_P0024350 Cr2 protein_coding nonsense_mediated_decay MGP_AJ_T0024351.1 MGP_AJ_G0016948.1 mouse_genomes_project 1 194011677 194027257 - Cr2 protein_coding retained_intron MGP_AJ_T0024352.1 MGP_AJ_G0016948.1 mouse_genomes_project 1 194012026 194024610 - MGP_AJ_P0024352 Cr2 protein_coding protein_coding MGP_AJ_T0024353.1 MGP_AJ_G0016948.1 mouse_genomes_project 1 194012046 194050195 - MGP_AJ_P0024353 Cr2 protein_coding protein_coding MGP_AJ_T0024354.1 MGP_AJ_G0016948.1 mouse_genomes_project 1 194013239 194027348 - Cr2 protein_coding retained_intron MGP_AJ_T0024355.1 MGP_AJ_G0016948.1 mouse_genomes_project 1 194013665 194050157 - MGP_AJ_P0024355 Cr2 protein_coding unknown_likely_coding MGP_AJ_T0024356.1 MGP_AJ_G0016948.1 mouse_genomes_project 1 194036213 194041433 - Cr2 protein_coding processed_transcript MGP_AJ_T0024357.1 MGP_AJ_G0016948.1 mouse_genomes_project 1 194038760 194044184 - MGP_AJ_P0024357 Cr2 protein_coding protein_coding MGP_AJ_T0024358.1 MGP_AJ_G0016948.1 mouse_genomes_project 1 194038847 194050262 - Cr2 protein_coding processed_transcript MGP_AJ_T0024359.1 MGP_AJ_G0016948.1 mouse_genomes_project 1 194043660 194050262 - Cr2 protein_coding processed_transcript MGP_AJ_T0021887.1 MGP_AJ_G0016418.1 mouse_genomes_project 1 129012865 129063818 - MGP_AJ_P0021887 Zp3r protein_coding protein_coding MGP_AJ_T0021888.1 MGP_AJ_G0016418.1 mouse_genomes_project 1 129012865 129063818 - MGP_AJ_P0021888 Zp3r protein_coding protein_coding MGP_AJ_T0021889.1 MGP_AJ_G0016418.1 mouse_genomes_project 1 129012868 129063809 - MGP_AJ_P0021889 Zp3r protein_coding protein_coding MGP_AJ_T0019247.1 MGP_AJ_G0015899.1 mouse_genomes_project 1 32409929 32441961 - MGP_AJ_P0019247 Fam168b protein_coding protein_coding MGP_AJ_T0019248.1 MGP_AJ_G0015899.1 mouse_genomes_project 1 32409936 32441976 - MGP_AJ_P0019248 Fam168b protein_coding protein_coding MGP_AJ_T0019249.1 MGP_AJ_G0015899.1 mouse_genomes_project 1 32413935 32441875 - MGP_AJ_P0019249 Fam168b protein_coding protein_coding MGP_AJ_T0019250.1 MGP_AJ_G0015899.1 mouse_genomes_project 1 32414052 32441896 - MGP_AJ_P0019250 Fam168b protein_coding nonsense_mediated_decay MGP_AJ_T0019251.1 MGP_AJ_G0015899.1 mouse_genomes_project 1 32414709 32441945 - MGP_AJ_P0019251 Fam168b protein_coding protein_coding MGP_AJ_T0019252.1 MGP_AJ_G0015899.1 mouse_genomes_project 1 32416312 32441924 - Fam168b protein_coding processed_transcript MGP_AJ_T0019253.1 MGP_AJ_G0015899.1 mouse_genomes_project 1 32416399 32441915 - MGP_AJ_P0019253 Fam168b protein_coding protein_coding MGP_AJ_T0019254.1 MGP_AJ_G0015899.1 mouse_genomes_project 1 32425392 32441976 - Fam168b protein_coding retained_intron MGP_AJ_T0012261.1 MGP_AJ_G0010356.1 mouse_genomes_project 1 141209243 141209538 + processed_pseudogene processed_pseudogene MGP_AJ_T0000755.1 MGP_AJ_G0000694.1 mouse_genomes_project 1 176001083 176001879 - TEC TEC MGP_AJ_T0000802.1 MGP_AJ_G0000738.1 mouse_genomes_project 1 193543240 193545126 + TEC TEC MGP_AJ_T0100448.1 MGP_AJ_G0038414.1 mouse_genomes_project 1 98665328 98665460 - Gm23602 snoRNA snoRNA MGP_AJ_T0000741.1 MGP_AJ_G0000680.1 mouse_genomes_project 1 174151625 174153435 - TEC TEC MGP_AJ_T0021885.1 MGP_AJ_G0016417.1 mouse_genomes_project 1 128865408 128894181 - MGP_AJ_P0021885 Cd55 protein_coding protein_coding MGP_AJ_T0021886.1 MGP_AJ_G0016417.1 mouse_genomes_project 1 128886418 128893888 - Cd55 protein_coding processed_transcript MGP_AJ_T0023606.1 MGP_AJ_G0016783.1 mouse_genomes_project 1 171853310 171854301 + MGP_AJ_P0023606 Olfr418 protein_coding protein_coding MGP_AJ_T0023687.1 MGP_AJ_G0016817.1 mouse_genomes_project 1 174440058 174470411 - MGP_AJ_P0023687 Opn3 protein_coding protein_coding MGP_AJ_T0021314.1 MGP_AJ_G0016292.1 mouse_genomes_project 1 89685704 89719937 + MGP_AJ_P0021314 Traf3ip1 protein_coding protein_coding MGP_AJ_T0021315.1 MGP_AJ_G0016292.1 mouse_genomes_project 1 89685751 89721288 + MGP_AJ_P0021315 Traf3ip1 protein_coding protein_coding MGP_AJ_T0021316.1 MGP_AJ_G0016292.1 mouse_genomes_project 1 89710262 89721288 + Traf3ip1 protein_coding retained_intron MGP_AJ_T0011893.1 MGP_AJ_G0009988.1 mouse_genomes_project 1 13100028 13100128 + processed_pseudogene processed_pseudogene MGP_AJ_T0023848.1 MGP_AJ_G0016847.1 mouse_genomes_project 1 179205090 179301214 + MGP_AJ_P0023848 Itpkb protein_coding protein_coding MGP_AJ_T0023849.1 MGP_AJ_G0016847.1 mouse_genomes_project 1 179208467 179213053 + Itpkb protein_coding retained_intron MGP_AJ_T0099190.1 MGP_AJ_G0037156.1 mouse_genomes_project 1 104305127 104305234 + Gm26214 snRNA snRNA MGP_AJ_T0002824.1 MGP_AJ_G0002674.1 mouse_genomes_project 1 69542735 69547350 + Apol7d antisense antisense MGP_AJ_T0002825.1 MGP_AJ_G0002674.1 mouse_genomes_project 1 69542786 69551946 + Apol7d antisense antisense MGP_AJ_T0002826.1 MGP_AJ_G0002674.1 mouse_genomes_project 1 69543233 69552736 + Apol7d antisense antisense MGP_AJ_T0002827.1 MGP_AJ_G0002674.1 mouse_genomes_project 1 69543237 69547138 + Apol7d antisense antisense MGP_AJ_T0098499.1 MGP_AJ_G0036483.1 mouse_genomes_project 1 28646111 28646249 - Gm27362 rRNA rRNA MGP_AJ_T0022108.1 MGP_AJ_G0016469.1 mouse_genomes_project 1 131821289 131838049 + MGP_AJ_P0022108 Etnk2 protein_coding protein_coding MGP_AJ_T0022109.1 MGP_AJ_G0016469.1 mouse_genomes_project 1 131821293 131832768 + Etnk2 protein_coding retained_intron MGP_AJ_T0022110.1 MGP_AJ_G0016469.1 mouse_genomes_project 1 131821565 131837102 + MGP_AJ_P0022110 Etnk2 protein_coding protein_coding MGP_AJ_T0022111.1 MGP_AJ_G0016469.1 mouse_genomes_project 1 131823481 131826852 + Etnk2 protein_coding retained_intron MGP_AJ_T0022112.1 MGP_AJ_G0016469.1 mouse_genomes_project 1 131825004 131834693 + Etnk2 protein_coding processed_transcript MGP_AJ_T0002928.1 MGP_AJ_G0002752.1 mouse_genomes_project 1 160468591 160529292 + Gm38304 antisense antisense MGP_AJ_T0012073.1 MGP_AJ_G0010168.1 mouse_genomes_project 1 61594503 61595007 + processed_pseudogene processed_pseudogene MGP_AJ_T0016997.1 MGP_AJ_G0015074.1 mouse_genomes_project 1 62574794 62585475 - 2810408I11Rik processed_transcript antisense MGP_AJ_T0016998.1 MGP_AJ_G0015074.1 mouse_genomes_project 1 62578187 62585424 - 2810408I11Rik processed_transcript antisense MGP_AJ_T0016999.1 MGP_AJ_G0015074.1 mouse_genomes_project 1 62583939 62585444 - 2810408I11Rik processed_transcript retained_intron MGP_AJ_T0009552.1 MGP_AJ_G0007674.1 mouse_genomes_project 1 167528541 167528661 - Mir6354 miRNA miRNA MGP_AJ_T0021346.1 MGP_AJ_G0016298.1 mouse_genomes_project 1 90695867 90712513 - MGP_AJ_P0021346 Olfr1415 protein_coding protein_coding MGP_AJ_T0021347.1 MGP_AJ_G0016298.1 mouse_genomes_project 1 90707085 90728758 - MGP_AJ_P0021347 Olfr1415 protein_coding protein_coding MGP_AJ_T0006059.1 MGP_AJ_G0005071.1 mouse_genomes_project 1 190402056 190405050 - Gm37432 lincRNA lincRNA MGP_AJ_T0018959.1 MGP_AJ_G0015832.1 mouse_genomes_project 1 13197412 13236103 - MGP_AJ_P0018959 Sbspon protein_coding protein_coding MGP_AJ_T0005887.1 MGP_AJ_G0004936.1 mouse_genomes_project 1 119468767 119502369 + Celrr lincRNA lincRNA MGP_AJ_T0005888.1 MGP_AJ_G0004936.1 mouse_genomes_project 1 119468833 119499142 + Celrr lincRNA lincRNA MGP_AJ_T0005889.1 MGP_AJ_G0004936.1 mouse_genomes_project 1 119468836 119557926 + Celrr lincRNA lincRNA MGP_AJ_T0005890.1 MGP_AJ_G0004936.1 mouse_genomes_project 1 119468891 119470295 + Celrr lincRNA lincRNA MGP_AJ_T0011923.1 MGP_AJ_G0010018.1 mouse_genomes_project 1 21517185 21518052 + processed_pseudogene processed_pseudogene MGP_AJ_T0005967.1 MGP_AJ_G0004998.1 mouse_genomes_project 1 161812213 161814036 - Gm26523 lincRNA lincRNA MGP_AJ_T0012353.1 MGP_AJ_G0010448.1 mouse_genomes_project 1 181045985 181046769 - processed_pseudogene processed_pseudogene MGP_AJ_T0020208.1 MGP_AJ_G0016073.1 mouse_genomes_project 1 61542286 61611257 - MGP_AJ_P0020208 Dytn protein_coding protein_coding MGP_AJ_T0020209.1 MGP_AJ_G0016073.1 mouse_genomes_project 1 61585335 61611240 - Dytn protein_coding retained_intron MGP_AJ_T0011895.1 MGP_AJ_G0009990.1 mouse_genomes_project 1 13990551 13991234 - processed_pseudogene processed_pseudogene MGP_AJ_T0023499.1 MGP_AJ_G0016754.1 mouse_genomes_project 1 170619424 170624705 - MGP_AJ_P0023499 Nhlh1 protein_coding protein_coding MGP_AJ_T0000469.1 MGP_AJ_G0000410.1 mouse_genomes_project 1 52318713 52320374 - TEC TEC MGP_AJ_T0023963.1 MGP_AJ_G0016873.1 mouse_genomes_project 1 181330914 181385388 + MGP_AJ_P0023963 Trp53bp2 protein_coding protein_coding MGP_AJ_T0023964.1 MGP_AJ_G0016873.1 mouse_genomes_project 1 181363870 181384738 + Trp53bp2 protein_coding retained_intron MGP_AJ_T0023965.1 MGP_AJ_G0016873.1 mouse_genomes_project 1 181366544 181370285 + MGP_AJ_P0023965 Trp53bp2 protein_coding protein_coding MGP_AJ_T0020337.1 MGP_AJ_G0016101.1 mouse_genomes_project 1 64882000 64929880 - MGP_AJ_P0020337 Lancl1 protein_coding protein_coding MGP_AJ_T0020338.1 MGP_AJ_G0016101.1 mouse_genomes_project 1 64882000 64929873 - MGP_AJ_P0020338 Lancl1 protein_coding protein_coding MGP_AJ_T0020339.1 MGP_AJ_G0016101.1 mouse_genomes_project 1 64887955 64929842 - MGP_AJ_P0020339 Lancl1 protein_coding protein_coding MGP_AJ_T0020340.1 MGP_AJ_G0016101.1 mouse_genomes_project 1 64891594 64912126 - Lancl1 protein_coding processed_transcript MGP_AJ_T0020341.1 MGP_AJ_G0016101.1 mouse_genomes_project 1 64894527 64929842 - MGP_AJ_P0020341 Lancl1 protein_coding protein_coding MGP_AJ_T0020342.1 MGP_AJ_G0016101.1 mouse_genomes_project 1 64910669 64913278 - Lancl1 protein_coding retained_intron MGP_AJ_T0002959.1 MGP_AJ_G0002776.1 mouse_genomes_project 1 175686675 175691385 - Gm15423 antisense antisense MGP_AJ_T0000503.1 MGP_AJ_G0000444.1 mouse_genomes_project 1 64709461 64714171 - TEC TEC MGP_AJ_T0024015.1 MGP_AJ_G0016883.1 mouse_genomes_project 1 182279656 182300139 + MGP_AJ_P0024015 Taf1a protein_coding protein_coding MGP_AJ_T0024016.1 MGP_AJ_G0016883.1 mouse_genomes_project 1 182279660 182297797 + MGP_AJ_P0024016 Taf1a protein_coding protein_coding MGP_AJ_T0024017.1 MGP_AJ_G0016883.1 mouse_genomes_project 1 182279735 182300996 + MGP_AJ_P0024017 Taf1a protein_coding unknown_likely_coding MGP_AJ_T0024018.1 MGP_AJ_G0016883.1 mouse_genomes_project 1 182299394 182300997 + MGP_AJ_P0024018 Taf1a protein_coding protein_coding MGP_AJ_T0100437.1 MGP_AJ_G0038403.1 mouse_genomes_project 1 64753194 64753324 + Gm25832 snoRNA snoRNA MGP_AJ_T0000574.1 MGP_AJ_G0000515.1 mouse_genomes_project 1 102063635 102066524 + TEC TEC MGP_AJ_T0002886.1 MGP_AJ_G0002719.1 mouse_genomes_project 1 131176322 131179794 + Gm10538 antisense antisense MGP_AJ_T0100462.1 MGP_AJ_G0038428.1 mouse_genomes_project 1 131261899 131262020 - Gm22609 snoRNA snoRNA MGP_AJ_T0020952.1 MGP_AJ_G0016212.1 mouse_genomes_project 1 82794659 82856020 + MGP_AJ_P0020952 Fbxo36 protein_coding protein_coding MGP_AJ_T0020953.1 MGP_AJ_G0016212.1 mouse_genomes_project 1 82794671 82856020 + Fbxo36 protein_coding processed_transcript MGP_AJ_T0020954.1 MGP_AJ_G0016212.1 mouse_genomes_project 1 82821463 82856020 + Fbxo36 protein_coding processed_transcript MGP_AJ_T0020955.1 MGP_AJ_G0016212.1 mouse_genomes_project 1 82824179 82856020 + Fbxo36 protein_coding processed_transcript MGP_AJ_T0019710.1 MGP_AJ_G0015987.1 mouse_genomes_project 1 49767890 49888040 + MGP_AJ_P0019710 Stat4 protein_coding protein_coding MGP_AJ_T0019711.1 MGP_AJ_G0015987.1 mouse_genomes_project 1 49788864 49888035 + MGP_AJ_P0019711 Stat4 protein_coding protein_coding MGP_AJ_T0019712.1 MGP_AJ_G0015987.1 mouse_genomes_project 1 49789247 49853800 + Stat4 protein_coding retained_intron MGP_AJ_T0019713.1 MGP_AJ_G0015987.1 mouse_genomes_project 1 49886299 49888039 + Stat4 protein_coding retained_intron MGP_AJ_T0022411.1 MGP_AJ_G0016533.1 mouse_genomes_project 1 137449109 137547640 + MGP_AJ_P0022411 Dennd1b protein_coding protein_coding MGP_AJ_T0022412.1 MGP_AJ_G0016533.1 mouse_genomes_project 1 137449383 137660340 + MGP_AJ_P0022412 Dennd1b protein_coding protein_coding MGP_AJ_T0022413.1 MGP_AJ_G0016533.1 mouse_genomes_project 1 137449402 137569407 + MGP_AJ_P0022413 Dennd1b protein_coding nonsense_mediated_decay MGP_AJ_T0022414.1 MGP_AJ_G0016533.1 mouse_genomes_project 1 137449543 137663246 + MGP_AJ_P0022414 Dennd1b protein_coding nonsense_mediated_decay MGP_AJ_T0022415.1 MGP_AJ_G0016533.1 mouse_genomes_project 1 137453331 137660340 + MGP_AJ_P0022415 Dennd1b protein_coding protein_coding MGP_AJ_T0022416.1 MGP_AJ_G0016533.1 mouse_genomes_project 1 137538232 137541022 + Dennd1b protein_coding retained_intron MGP_AJ_T0022417.1 MGP_AJ_G0016533.1 mouse_genomes_project 1 137569402 137620121 + Dennd1b protein_coding retained_intron MGP_AJ_T0022418.1 MGP_AJ_G0016533.1 mouse_genomes_project 1 137609886 137660280 + Dennd1b protein_coding processed_transcript MGP_AJ_T0022419.1 MGP_AJ_G0016533.1 mouse_genomes_project 1 137617476 137658391 + Dennd1b protein_coding processed_transcript MGP_AJ_T0012298.1 MGP_AJ_G0010393.1 mouse_genomes_project 1 154691561 154691761 - processed_pseudogene processed_pseudogene MGP_AJ_T0020448.1 MGP_AJ_G0016124.1 mouse_genomes_project 1 72120018 72127083 + MGP_AJ_P0020448 Cxcr2 protein_coding protein_coding MGP_AJ_T0012333.1 MGP_AJ_G0010428.1 mouse_genomes_project 1 169939197 169939533 + processed_pseudogene processed_pseudogene MGP_AJ_T0102206.1 MGP_AJ_G0039949.1 mouse_genomes_project 1 179869349 179869481 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0022898.1 MGP_AJ_G0016621.1 mouse_genomes_project 1 158561722 158631446 - MGP_AJ_P0022898 Tnn protein_coding protein_coding MGP_AJ_T0022899.1 MGP_AJ_G0016621.1 mouse_genomes_project 1 158562661 158625755 - MGP_AJ_P0022899 Tnn protein_coding protein_coding MGP_AJ_T0005658.1 MGP_AJ_G0004761.1 mouse_genomes_project 1 18078721 18083988 + Gm28653 lincRNA lincRNA MGP_AJ_T0005780.1 MGP_AJ_G0004850.1 mouse_genomes_project 1 70132012 70163991 + D230017M19Rik lincRNA lincRNA MGP_AJ_T0005781.1 MGP_AJ_G0004850.1 mouse_genomes_project 1 70139578 70172885 + D230017M19Rik lincRNA lincRNA MGP_AJ_T0005782.1 MGP_AJ_G0004850.1 mouse_genomes_project 1 70162559 70165029 + D230017M19Rik lincRNA lincRNA MGP_AJ_T0012146.1 MGP_AJ_G0010241.1 mouse_genomes_project 1 91639435 91640224 + processed_pseudogene processed_pseudogene MGP_AJ_T0101929.1 MGP_AJ_G0039783.1 mouse_genomes_project 1 95177680 95270875 - transcribed_unprocessed_pseudogene processed_transcript MGP_AJ_T0101930.1 MGP_AJ_G0039783.1 mouse_genomes_project 1 95193509 95270535 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_AJ_T0011886.1 MGP_AJ_G0009981.1 mouse_genomes_project 1 8948528 8948790 - processed_pseudogene processed_pseudogene MGP_AJ_T0011948.1 MGP_AJ_G0010043.1 mouse_genomes_project 1 29285271 29286104 + processed_pseudogene processed_pseudogene MGP_AJ_T0000698.1 MGP_AJ_G0000637.1 mouse_genomes_project 1 156414212 156617995 + TEC TEC MGP_AJ_T0019026.1 MGP_AJ_G0015846.1 mouse_genomes_project 1 15611763 15612734 - MGP_AJ_P0019026 Defb18 protein_coding protein_coding MGP_AJ_T0012183.1 MGP_AJ_G0010278.1 mouse_genomes_project 1 107380299 107381426 - processed_pseudogene processed_pseudogene MGP_AJ_T0024097.1 MGP_AJ_G0016903.1 mouse_genomes_project 1 186471821 186909681 + MGP_AJ_P0024097 Esrrg protein_coding protein_coding MGP_AJ_T0024098.1 MGP_AJ_G0016903.1 mouse_genomes_project 1 186472059 187082511 + MGP_AJ_P0024098 Esrrg protein_coding protein_coding MGP_AJ_T0024099.1 MGP_AJ_G0016903.1 mouse_genomes_project 1 186472725 186655730 + Esrrg protein_coding processed_transcript MGP_AJ_T0024100.1 MGP_AJ_G0016903.1 mouse_genomes_project 1 186862435 187083010 + MGP_AJ_P0024100 Esrrg protein_coding protein_coding MGP_AJ_T0024101.1 MGP_AJ_G0016903.1 mouse_genomes_project 1 186862476 187083009 + MGP_AJ_P0024101 Esrrg protein_coding protein_coding MGP_AJ_T0005765.1 MGP_AJ_G0004839.1 mouse_genomes_project 1 62546044 62548864 + Gm29152 lincRNA lincRNA MGP_AJ_T0002896.1 MGP_AJ_G0002725.1 mouse_genomes_project 1 133645604 133646496 + Gm15445 antisense antisense MGP_AJ_T0023274.1 MGP_AJ_G0016701.1 mouse_genomes_project 1 168226719 168233231 - MGP_AJ_P0023274 Rgs4 protein_coding protein_coding MGP_AJ_T0023275.1 MGP_AJ_G0016701.1 mouse_genomes_project 1 168227085 168233227 - MGP_AJ_P0023275 Rgs4 protein_coding protein_coding MGP_AJ_T0023276.1 MGP_AJ_G0016701.1 mouse_genomes_project 1 168229438 168233208 - Rgs4 protein_coding retained_intron MGP_AJ_T0002856.1 MGP_AJ_G0002698.1 mouse_genomes_project 1 91153520 91170542 - 9430060I03Rik antisense antisense MGP_AJ_T0002871.1 MGP_AJ_G0002707.1 mouse_genomes_project 1 117890724 117896987 - Gm27184 antisense antisense MGP_AJ_T0012103.1 MGP_AJ_G0010198.1 mouse_genomes_project 1 73472309 73472657 + processed_pseudogene processed_pseudogene MGP_AJ_T0012155.1 MGP_AJ_G0010250.1 mouse_genomes_project 1 98422026 98422590 + processed_pseudogene processed_pseudogene MGP_AJ_T0012274.1 MGP_AJ_G0010369.1 mouse_genomes_project 1 147288563 147289046 - processed_pseudogene processed_pseudogene MGP_AJ_T0021951.1 MGP_AJ_G0016436.1 mouse_genomes_project 1 129734690 129969280 - MGP_AJ_P0021951 Srgap2 protein_coding protein_coding MGP_AJ_T0021952.1 MGP_AJ_G0016436.1 mouse_genomes_project 1 129738797 129749893 - MGP_AJ_P0021952 Srgap2 protein_coding protein_coding MGP_AJ_T0021953.1 MGP_AJ_G0016436.1 mouse_genomes_project 1 129744427 129778911 - Srgap2 protein_coding processed_transcript MGP_AJ_T0021954.1 MGP_AJ_G0016436.1 mouse_genomes_project 1 129744657 129969280 - MGP_AJ_P0021954 Srgap2 protein_coding protein_coding MGP_AJ_T0021955.1 MGP_AJ_G0016436.1 mouse_genomes_project 1 129744658 129753730 - Srgap2 protein_coding processed_transcript MGP_AJ_T0021956.1 MGP_AJ_G0016436.1 mouse_genomes_project 1 129744660 129790388 - MGP_AJ_P0021956 Srgap2 protein_coding protein_coding MGP_AJ_T0021957.1 MGP_AJ_G0016436.1 mouse_genomes_project 1 129745195 129745820 - Srgap2 protein_coding processed_transcript MGP_AJ_T0021958.1 MGP_AJ_G0016436.1 mouse_genomes_project 1 129746080 129809790 - MGP_AJ_P0021958 Srgap2 protein_coding protein_coding MGP_AJ_T0021959.1 MGP_AJ_G0016436.1 mouse_genomes_project 1 129765609 129778104 - Srgap2 protein_coding retained_intron MGP_AJ_T0021960.1 MGP_AJ_G0016436.1 mouse_genomes_project 1 129807751 129969285 - Srgap2 protein_coding retained_intron MGP_AJ_T0021961.1 MGP_AJ_G0016436.1 mouse_genomes_project 1 129853770 129956176 - MGP_AJ_P0021961 Srgap2 protein_coding protein_coding MGP_AJ_T0021962.1 MGP_AJ_G0016436.1 mouse_genomes_project 1 129878642 129946318 - MGP_AJ_P0021962 Srgap2 protein_coding protein_coding MGP_AJ_T0022527.1 MGP_AJ_G0016558.1 mouse_genomes_project 1 148793255 148851292 + MGP_AJ_P0022527 Tpr protein_coding protein_coding MGP_AJ_T0022528.1 MGP_AJ_G0016558.1 mouse_genomes_project 1 148793667 148851412 + MGP_AJ_P0022528 Tpr protein_coding protein_coding MGP_AJ_T0022529.1 MGP_AJ_G0016558.1 mouse_genomes_project 1 148793801 148795919 + Tpr protein_coding retained_intron MGP_AJ_T0022530.1 MGP_AJ_G0016558.1 mouse_genomes_project 1 148812378 148814349 + Tpr protein_coding retained_intron MGP_AJ_T0022531.1 MGP_AJ_G0016558.1 mouse_genomes_project 1 148815174 148816790 + Tpr protein_coding retained_intron MGP_AJ_T0022532.1 MGP_AJ_G0016558.1 mouse_genomes_project 1 148825130 148829398 + Tpr protein_coding retained_intron MGP_AJ_T0022533.1 MGP_AJ_G0016558.1 mouse_genomes_project 1 148830408 148841781 + MGP_AJ_P0022533 Tpr protein_coding protein_coding MGP_AJ_T0022534.1 MGP_AJ_G0016558.1 mouse_genomes_project 1 148831468 148841778 + Tpr protein_coding retained_intron MGP_AJ_T0022535.1 MGP_AJ_G0016558.1 mouse_genomes_project 1 148838513 148844692 + Tpr protein_coding retained_intron MGP_AJ_T0022536.1 MGP_AJ_G0016558.1 mouse_genomes_project 1 148840397 148851404 + Tpr protein_coding retained_intron MGP_AJ_T0022537.1 MGP_AJ_G0016558.1 mouse_genomes_project 1 148841662 148851404 + Tpr protein_coding retained_intron MGP_AJ_T0022538.1 MGP_AJ_G0016558.1 mouse_genomes_project 1 148847394 148851404 + MGP_AJ_P0022538 Tpr protein_coding protein_coding MGP_AJ_T0022539.1 MGP_AJ_G0016558.1 mouse_genomes_project 1 148848931 148851406 + Tpr protein_coding retained_intron MGP_AJ_T0022540.1 MGP_AJ_G0016558.1 mouse_genomes_project 1 148850347 148851268 + Tpr protein_coding processed_transcript MGP_AJ_T0012314.1 MGP_AJ_G0010409.1 mouse_genomes_project 1 162541491 162541880 + processed_pseudogene processed_pseudogene MGP_AJ_T0020191.1 MGP_AJ_G0016070.1 mouse_genomes_project 1 61082810 61114306 - MGP_AJ_P0020191 Gpr1 protein_coding protein_coding MGP_AJ_T0020192.1 MGP_AJ_G0016070.1 mouse_genomes_project 1 61108543 61113986 - Gpr1 protein_coding processed_transcript MGP_AJ_T0023624.1 MGP_AJ_G0016788.1 mouse_genomes_project 1 172063415 172078101 - MGP_AJ_P0023624 protein_coding protein_coding MGP_AJ_T0023627.1 MGP_AJ_G0016788.1 mouse_genomes_project 1 172072450 172078123 - MGP_AJ_P0023627 protein_coding protein_coding MGP_AJ_T0023958.1 MGP_AJ_G0016872.1 mouse_genomes_project 1 181232897 181261022 - MGP_AJ_P0023958 Fbxo28 protein_coding protein_coding MGP_AJ_T0023959.1 MGP_AJ_G0016872.1 mouse_genomes_project 1 181234985 181238178 - Fbxo28 protein_coding retained_intron MGP_AJ_T0023960.1 MGP_AJ_G0016872.1 mouse_genomes_project 1 181236259 181261004 - MGP_AJ_P0023960 Fbxo28 protein_coding nonsense_mediated_decay MGP_AJ_T0023961.1 MGP_AJ_G0016872.1 mouse_genomes_project 1 181236785 181260975 - MGP_AJ_P0023961 Fbxo28 protein_coding nonsense_mediated_decay MGP_AJ_T0023962.1 MGP_AJ_G0016872.1 mouse_genomes_project 1 181237038 181261033 - MGP_AJ_P0023962 Fbxo28 protein_coding nonsense_mediated_decay MGP_AJ_T0002902.1 MGP_AJ_G0002731.1 mouse_genomes_project 1 137020486 137053135 + Gm28501 antisense antisense MGP_AJ_T0022153.1 MGP_AJ_G0016478.1 mouse_genomes_project 1 132373982 132385091 - MGP_AJ_P0022153 Prelp protein_coding protein_coding MGP_AJ_T0022154.1 MGP_AJ_G0016478.1 mouse_genomes_project 1 132376398 132385088 - Prelp protein_coding processed_transcript MGP_AJ_T0012362.1 MGP_AJ_G0010457.1 mouse_genomes_project 1 185833145 185834151 + processed_pseudogene processed_pseudogene MGP_AJ_T0023024.1 MGP_AJ_G0016644.1 mouse_genomes_project 1 161180209 161253077 - MGP_AJ_P0023024 Prrc2c protein_coding protein_coding MGP_AJ_T0023025.1 MGP_AJ_G0016644.1 mouse_genomes_project 1 161180211 161253108 - MGP_AJ_P0023025 Prrc2c protein_coding protein_coding MGP_AJ_T0023026.1 MGP_AJ_G0016644.1 mouse_genomes_project 1 161181269 161217309 - MGP_AJ_P0023026 Prrc2c protein_coding protein_coding MGP_AJ_T0023027.1 MGP_AJ_G0016644.1 mouse_genomes_project 1 161181272 161217735 - MGP_AJ_P0023027 Prrc2c protein_coding protein_coding MGP_AJ_T0023028.1 MGP_AJ_G0016644.1 mouse_genomes_project 1 161184184 161253033 - MGP_AJ_P0023028 Prrc2c protein_coding protein_coding MGP_AJ_T0023029.1 MGP_AJ_G0016644.1 mouse_genomes_project 1 161185331 161253102 - MGP_AJ_P0023029 Prrc2c protein_coding protein_coding MGP_AJ_T0023030.1 MGP_AJ_G0016644.1 mouse_genomes_project 1 161195602 161200734 - Prrc2c protein_coding retained_intron MGP_AJ_T0023031.1 MGP_AJ_G0016644.1 mouse_genomes_project 1 161222910 161252956 - MGP_AJ_P0023031 Prrc2c protein_coding protein_coding MGP_AJ_T0023032.1 MGP_AJ_G0016644.1 mouse_genomes_project 1 161225345 161226560 - Prrc2c protein_coding retained_intron MGP_AJ_T0023033.1 MGP_AJ_G0016644.1 mouse_genomes_project 1 161232444 161253049 - Prrc2c protein_coding retained_intron MGP_AJ_T0023034.1 MGP_AJ_G0016644.1 mouse_genomes_project 1 161233096 161252902 - MGP_AJ_P0023034 Prrc2c protein_coding protein_coding MGP_AJ_T0023035.1 MGP_AJ_G0016644.1 mouse_genomes_project 1 161235456 161237420 - Prrc2c protein_coding retained_intron MGP_AJ_T0023036.1 MGP_AJ_G0016644.1 mouse_genomes_project 1 161241169 161243274 - Prrc2c protein_coding retained_intron MGP_AJ_T0023037.1 MGP_AJ_G0016644.1 mouse_genomes_project 1 161242809 161253039 - Prrc2c protein_coding processed_transcript MGP_AJ_T0000599.1 MGP_AJ_G0000540.1 mouse_genomes_project 1 121941953 121944992 - TEC TEC MGP_AJ_T0000649.1 MGP_AJ_G0000588.1 mouse_genomes_project 1 136448774 136450917 + TEC TEC MGP_AJ_T0100434.1 MGP_AJ_G0038400.1 mouse_genomes_project 1 61078348 61078383 + Gm26457 snoRNA snoRNA MGP_AJ_T0020823.1 MGP_AJ_G0016186.1 mouse_genomes_project 1 76769801 76773096 + MGP_AJ_P0020823 Kcne4 protein_coding protein_coding MGP_AJ_T0020824.1 MGP_AJ_G0016186.1 mouse_genomes_project 1 76769970 76773096 + MGP_AJ_P0020824 Kcne4 protein_coding protein_coding MGP_AJ_T0000519.1 MGP_AJ_G0000460.1 mouse_genomes_project 1 73392656 73394848 - TEC TEC MGP_AJ_T0005895.1 MGP_AJ_G0004941.1 mouse_genomes_project 1 123571174 123577205 - 1700121L03Rik lincRNA lincRNA MGP_AJ_T0020973.1 MGP_AJ_G0016216.1 mouse_genomes_project 1 83784679 83843591 + MGP_AJ_P0020973 Cab39 protein_coding protein_coding MGP_AJ_T0020974.1 MGP_AJ_G0016216.1 mouse_genomes_project 1 83784779 83810357 + MGP_AJ_P0020974 Cab39 protein_coding protein_coding MGP_AJ_T0020975.1 MGP_AJ_G0016216.1 mouse_genomes_project 1 83785699 83829335 + MGP_AJ_P0020975 Cab39 protein_coding protein_coding MGP_AJ_T0020976.1 MGP_AJ_G0016216.1 mouse_genomes_project 1 83785742 83842380 + MGP_AJ_P0020976 Cab39 protein_coding protein_coding MGP_AJ_T0020977.1 MGP_AJ_G0016216.1 mouse_genomes_project 1 83835095 83838086 + Cab39 protein_coding retained_intron MGP_AJ_T0005664.1 MGP_AJ_G0004767.1 mouse_genomes_project 1 20967795 20989711 + Gm28822 lincRNA lincRNA MGP_AJ_T0019551.1 MGP_AJ_G0015955.1 mouse_genomes_project 1 38370004 38457715 + MGP_AJ_P0019551 Slc9a2 protein_coding protein_coding MGP_AJ_T0019552.1 MGP_AJ_G0015955.1 mouse_genomes_project 1 38371027 38414879 + MGP_AJ_P0019552 Slc9a2 protein_coding protein_coding MGP_AJ_T0019553.1 MGP_AJ_G0015955.1 mouse_genomes_project 1 38444192 38445505 + Slc9a2 protein_coding retained_intron MGP_AJ_T0019606.1 MGP_AJ_G0015968.1 mouse_genomes_project 1 41710980 41721579 - MGP_AJ_P0019606 Mettl21c protein_coding protein_coding MGP_AJ_T0019607.1 MGP_AJ_G0015968.1 mouse_genomes_project 1 41711507 41719041 - Mettl21c protein_coding processed_transcript MGP_AJ_T0019608.1 MGP_AJ_G0015968.1 mouse_genomes_project 1 41712082 41721607 - Mettl21c protein_coding retained_intron MGP_AJ_T0005777.1 MGP_AJ_G0004847.1 mouse_genomes_project 1 69850321 69896138 - 4933417E11Rik lincRNA lincRNA MGP_AJ_T0099229.1 MGP_AJ_G0037195.1 mouse_genomes_project 1 174674360 174674461 + Gm23805 snRNA snRNA MGP_AJ_T0002778.1 MGP_AJ_G0002638.1 mouse_genomes_project 1 34956662 34961174 - 4930439A04Rik antisense antisense MGP_AJ_T0002779.1 MGP_AJ_G0002638.1 mouse_genomes_project 1 34960556 34961190 - 4930439A04Rik antisense antisense MGP_AJ_T0021790.1 MGP_AJ_G0016399.1 mouse_genomes_project 1 124040082 124239441 + MGP_AJ_P0021790 Gpr39 protein_coding protein_coding MGP_AJ_T0021791.1 MGP_AJ_G0016399.1 mouse_genomes_project 1 124205095 124238752 + Gpr39 protein_coding processed_transcript MGP_AJ_T0020259.1 MGP_AJ_G0016088.1 mouse_genomes_project 1 62995413 62997787 - Cryga protein_coding retained_intron MGP_AJ_T0020260.1 MGP_AJ_G0016088.1 mouse_genomes_project 1 62995413 62997800 - MGP_AJ_P0020260 Cryga protein_coding protein_coding MGP_AJ_T0022283.1 MGP_AJ_G0016508.1 mouse_genomes_project 1 133938830 134091460 - MGP_AJ_P0022283 Nav1 protein_coding protein_coding MGP_AJ_T0022284.1 MGP_AJ_G0016508.1 mouse_genomes_project 1 133938830 134091110 - MGP_AJ_P0022284 Nav1 protein_coding protein_coding MGP_AJ_T0022285.1 MGP_AJ_G0016508.1 mouse_genomes_project 1 133943067 134112981 - MGP_AJ_P0022285 Nav1 protein_coding protein_coding MGP_AJ_T0022286.1 MGP_AJ_G0016508.1 mouse_genomes_project 1 133957226 133958759 - Nav1 protein_coding retained_intron MGP_AJ_T0022287.1 MGP_AJ_G0016508.1 mouse_genomes_project 1 133960167 133972984 - MGP_AJ_P0022287 Nav1 protein_coding protein_coding MGP_AJ_T0022288.1 MGP_AJ_G0016508.1 mouse_genomes_project 1 133962622 133966098 - Nav1 protein_coding retained_intron MGP_AJ_T0022289.1 MGP_AJ_G0016508.1 mouse_genomes_project 1 133962622 134016056 - Nav1 protein_coding retained_intron MGP_AJ_T0022290.1 MGP_AJ_G0016508.1 mouse_genomes_project 1 133963505 134016123 - Nav1 protein_coding processed_transcript MGP_AJ_T0023762.1 MGP_AJ_G0016834.1 mouse_genomes_project 1 177267785 177300056 + Efcab2 protein_coding processed_transcript MGP_AJ_T0023763.1 MGP_AJ_G0016834.1 mouse_genomes_project 1 177267803 177346423 + MGP_AJ_P0023763 Efcab2 protein_coding protein_coding MGP_AJ_T0023764.1 MGP_AJ_G0016834.1 mouse_genomes_project 1 177311210 177343389 + Efcab2 protein_coding processed_transcript MGP_AJ_T0009512.1 MGP_AJ_G0007634.1 mouse_genomes_project 1 83741959 83742086 + Mir8096 miRNA miRNA MGP_AJ_T0000556.1 MGP_AJ_G0000497.1 mouse_genomes_project 1 86853774 86855513 + TEC TEC MGP_AJ_T0000792.1 MGP_AJ_G0000729.1 mouse_genomes_project 1 190445670 190446677 - TEC TEC MGP_AJ_T0019504.1 MGP_AJ_G0015947.1 mouse_genomes_project 1 37577623 37705815 + MGP_AJ_P0019504 Map4k4 protein_coding protein_coding MGP_AJ_T0019505.1 MGP_AJ_G0015947.1 mouse_genomes_project 1 37577623 37705815 + MGP_AJ_P0019505 Map4k4 protein_coding protein_coding MGP_AJ_T0019506.1 MGP_AJ_G0015947.1 mouse_genomes_project 1 37577880 37579167 + Map4k4 protein_coding retained_intron MGP_AJ_T0019507.1 MGP_AJ_G0015947.1 mouse_genomes_project 1 37577880 37667722 + MGP_AJ_P0019507 Map4k4 protein_coding protein_coding MGP_AJ_T0019508.1 MGP_AJ_G0015947.1 mouse_genomes_project 1 37577889 37704263 + MGP_AJ_P0019508 Map4k4 protein_coding protein_coding MGP_AJ_T0019509.1 MGP_AJ_G0015947.1 mouse_genomes_project 1 37577889 37704263 + MGP_AJ_P0019509 Map4k4 protein_coding protein_coding MGP_AJ_T0019510.1 MGP_AJ_G0015947.1 mouse_genomes_project 1 37577890 37704263 + MGP_AJ_P0019510 Map4k4 protein_coding protein_coding MGP_AJ_T0019511.1 MGP_AJ_G0015947.1 mouse_genomes_project 1 37577934 37704478 + MGP_AJ_P0019511 Map4k4 protein_coding protein_coding MGP_AJ_T0019512.1 MGP_AJ_G0015947.1 mouse_genomes_project 1 37577940 37704434 + MGP_AJ_P0019512 Map4k4 protein_coding protein_coding MGP_AJ_T0019513.1 MGP_AJ_G0015947.1 mouse_genomes_project 1 37642004 37660642 + Map4k4 protein_coding processed_transcript MGP_AJ_T0019514.1 MGP_AJ_G0015947.1 mouse_genomes_project 1 37642699 37654282 + Map4k4 protein_coding processed_transcript MGP_AJ_T0019515.1 MGP_AJ_G0015947.1 mouse_genomes_project 1 37677405 37678372 + Map4k4 protein_coding retained_intron MGP_AJ_T0019516.1 MGP_AJ_G0015947.1 mouse_genomes_project 1 37677703 37684556 + MGP_AJ_P0019516 Map4k4 protein_coding protein_coding MGP_AJ_T0019517.1 MGP_AJ_G0015947.1 mouse_genomes_project 1 37677704 37682723 + MGP_AJ_P0019517 Map4k4 protein_coding protein_coding MGP_AJ_T0019518.1 MGP_AJ_G0015947.1 mouse_genomes_project 1 37678487 37688620 + MGP_AJ_P0019518 Map4k4 protein_coding protein_coding MGP_AJ_T0019519.1 MGP_AJ_G0015947.1 mouse_genomes_project 1 37685206 37687294 + Map4k4 protein_coding retained_intron MGP_AJ_T0019520.1 MGP_AJ_G0015947.1 mouse_genomes_project 1 37691884 37692731 + Map4k4 protein_coding retained_intron MGP_AJ_T0019521.1 MGP_AJ_G0015947.1 mouse_genomes_project 1 37702692 37703934 + Map4k4 protein_coding retained_intron MGP_AJ_T0002922.1 MGP_AJ_G0002747.1 mouse_genomes_project 1 158409771 158413095 - Gm38039 antisense antisense MGP_AJ_T0000350.1 MGP_AJ_G0000294.1 mouse_genomes_project 1 694407 697046 - TEC TEC MGP_AJ_T0005986.1 MGP_AJ_G0005014.1 mouse_genomes_project 1 165482017 165501436 - Gm16701 lincRNA lincRNA MGP_AJ_T0024338.1 MGP_AJ_G0016947.1 mouse_genomes_project 1 193968832 194003744 - MGP_AJ_P0024338 Cr1l protein_coding protein_coding MGP_AJ_T0024339.1 MGP_AJ_G0016947.1 mouse_genomes_project 1 193970109 194003723 - MGP_AJ_P0024339 Cr1l protein_coding protein_coding MGP_AJ_T0024340.1 MGP_AJ_G0016947.1 mouse_genomes_project 1 193975705 193979380 - Cr1l protein_coding retained_intron MGP_AJ_T0024341.1 MGP_AJ_G0016947.1 mouse_genomes_project 1 193975801 194003961 - MGP_AJ_P0024341 Cr1l protein_coding protein_coding MGP_AJ_T0024342.1 MGP_AJ_G0016947.1 mouse_genomes_project 1 193975807 193989805 - MGP_AJ_P0024342 Cr1l protein_coding protein_coding MGP_AJ_T0024343.1 MGP_AJ_G0016947.1 mouse_genomes_project 1 193986712 194001749 - Cr1l protein_coding retained_intron MGP_AJ_T0024344.1 MGP_AJ_G0016947.1 mouse_genomes_project 1 193986947 194003986 - MGP_AJ_P0024344 Cr1l protein_coding protein_coding MGP_AJ_T0024345.1 MGP_AJ_G0016947.1 mouse_genomes_project 1 193998201 194003934 - Cr1l protein_coding retained_intron MGP_AJ_T0024346.1 MGP_AJ_G0016947.1 mouse_genomes_project 1 194001480 194003730 - MGP_AJ_P0024346 Cr1l protein_coding nonsense_mediated_decay MGP_AJ_T0024347.1 MGP_AJ_G0016947.1 mouse_genomes_project 1 194001932 194003755 - Cr1l protein_coding retained_intron MGP_AJ_T0009482.1 MGP_AJ_G0007604.1 mouse_genomes_project 1 34264274 34264349 + Gm24133 miRNA miRNA MGP_AJ_T0022233.1 MGP_AJ_G0016497.1 mouse_genomes_project 1 133447912 133460826 + MGP_AJ_P0022233 Ube2t protein_coding protein_coding MGP_AJ_T0022234.1 MGP_AJ_G0016497.1 mouse_genomes_project 1 133447938 133451363 + Ube2t protein_coding retained_intron MGP_AJ_T0022235.1 MGP_AJ_G0016497.1 mouse_genomes_project 1 133457964 133460823 + MGP_AJ_P0022235 Ube2t protein_coding protein_coding MGP_AJ_T0022236.1 MGP_AJ_G0016497.1 mouse_genomes_project 1 133458617 133459519 + Ube2t protein_coding retained_intron MGP_AJ_T0012098.1 MGP_AJ_G0010193.1 mouse_genomes_project 1 69604539 69605416 - processed_pseudogene processed_pseudogene MGP_AJ_T0005683.1 MGP_AJ_G0004783.1 mouse_genomes_project 1 33599307 33600128 + 4930535G08Rik lincRNA lincRNA MGP_AJ_T0000778.1 MGP_AJ_G0000715.1 mouse_genomes_project 1 184204194 184206612 + TEC TEC MGP_AJ_T0023560.1 MGP_AJ_G0016768.1 mouse_genomes_project 1 171060056 171069469 + MGP_AJ_P0023560 Igsf9 protein_coding protein_coding MGP_AJ_T0023561.1 MGP_AJ_G0016768.1 mouse_genomes_project 1 171060466 171071520 + MGP_AJ_P0023561 Igsf9 protein_coding protein_coding MGP_AJ_T0023562.1 MGP_AJ_G0016768.1 mouse_genomes_project 1 171060473 171069506 + Igsf9 protein_coding processed_transcript MGP_AJ_T0023563.1 MGP_AJ_G0016768.1 mouse_genomes_project 1 171060482 171079025 + MGP_AJ_P0023563 Igsf9 protein_coding protein_coding MGP_AJ_T0023564.1 MGP_AJ_G0016768.1 mouse_genomes_project 1 171060487 171069689 + Igsf9 protein_coding retained_intron MGP_AJ_T0023565.1 MGP_AJ_G0016768.1 mouse_genomes_project 1 171060487 171070920 + Igsf9 protein_coding retained_intron MGP_AJ_T0023566.1 MGP_AJ_G0016768.1 mouse_genomes_project 1 171060498 171079025 + MGP_AJ_P0023566 Igsf9 protein_coding nonsense_mediated_decay MGP_AJ_T0023567.1 MGP_AJ_G0016768.1 mouse_genomes_project 1 171060581 171079026 + MGP_AJ_P0023567 Igsf9 protein_coding protein_coding MGP_AJ_T0023568.1 MGP_AJ_G0016768.1 mouse_genomes_project 1 171070965 171071859 + Igsf9 protein_coding retained_intron MGP_AJ_T0023569.1 MGP_AJ_G0016768.1 mouse_genomes_project 1 171071842 171074748 + MGP_AJ_P0023569 Igsf9 protein_coding protein_coding MGP_AJ_T0023570.1 MGP_AJ_G0016768.1 mouse_genomes_project 1 171073815 171075610 + Igsf9 protein_coding retained_intron MGP_AJ_T0023571.1 MGP_AJ_G0016768.1 mouse_genomes_project 1 171073842 171075636 + Igsf9 protein_coding retained_intron MGP_AJ_T0023572.1 MGP_AJ_G0016768.1 mouse_genomes_project 1 171074640 171076098 + Igsf9 protein_coding retained_intron MGP_AJ_T0023573.1 MGP_AJ_G0016768.1 mouse_genomes_project 1 171077667 171078489 + Igsf9 protein_coding retained_intron MGP_AJ_T0099221.1 MGP_AJ_G0037187.1 mouse_genomes_project 1 169295153 169295260 - Gm23523 snRNA snRNA MGP_AJ_T0000510.1 MGP_AJ_G0000451.1 mouse_genomes_project 1 67667037 67668923 + TEC TEC MGP_AJ_T0011947.1 MGP_AJ_G0010042.1 mouse_genomes_project 1 29112888 29114749 + processed_pseudogene processed_pseudogene MGP_AJ_T0002810.1 MGP_AJ_G0002663.1 mouse_genomes_project 1 57013750 57016053 + G730003C15Rik antisense antisense MGP_AJ_T0002811.1 MGP_AJ_G0002663.1 mouse_genomes_project 1 57013750 57016051 + G730003C15Rik antisense antisense MGP_AJ_T0019903.1 MGP_AJ_G0016025.1 mouse_genomes_project 1 55596007 55707894 + MGP_AJ_P0019903 Spats2l protein_coding protein_coding MGP_AJ_T0019904.1 MGP_AJ_G0016025.1 mouse_genomes_project 1 55596094 55701825 + Spats2l protein_coding retained_intron MGP_AJ_T0019905.1 MGP_AJ_G0016025.1 mouse_genomes_project 1 55596146 55724235 + MGP_AJ_P0019905 Spats2l protein_coding protein_coding MGP_AJ_T0019906.1 MGP_AJ_G0016025.1 mouse_genomes_project 1 55596264 55622267 + Spats2l protein_coding retained_intron MGP_AJ_T0019907.1 MGP_AJ_G0016025.1 mouse_genomes_project 1 55596445 55707962 + MGP_AJ_P0019907 Spats2l protein_coding protein_coding MGP_AJ_T0019908.1 MGP_AJ_G0016025.1 mouse_genomes_project 1 55596589 55760147 + MGP_AJ_P0019908 Spats2l protein_coding protein_coding MGP_AJ_T0019909.1 MGP_AJ_G0016025.1 mouse_genomes_project 1 55596735 55679709 + Spats2l protein_coding retained_intron MGP_AJ_T0019910.1 MGP_AJ_G0016025.1 mouse_genomes_project 1 55596757 55653979 + Spats2l protein_coding retained_intron MGP_AJ_T0019911.1 MGP_AJ_G0016025.1 mouse_genomes_project 1 55596762 55621409 + Spats2l protein_coding retained_intron MGP_AJ_T0019912.1 MGP_AJ_G0016025.1 mouse_genomes_project 1 55619500 55768585 + MGP_AJ_P0019912 Spats2l protein_coding protein_coding MGP_AJ_T0019913.1 MGP_AJ_G0016025.1 mouse_genomes_project 1 55724196 55762500 + Spats2l protein_coding retained_intron MGP_AJ_T0019800.1 MGP_AJ_G0016003.1 mouse_genomes_project 1 51104374 51112522 - MGP_AJ_P0019800 Asnsd1 protein_coding protein_coding MGP_AJ_T0019801.1 MGP_AJ_G0016003.1 mouse_genomes_project 1 51104402 51112522 - MGP_AJ_P0019801 Asnsd1 protein_coding protein_coding MGP_AJ_T0019802.1 MGP_AJ_G0016003.1 mouse_genomes_project 1 51107600 51112522 - MGP_AJ_P0019802 Asnsd1 protein_coding nonsense_mediated_decay MGP_AJ_T0019803.1 MGP_AJ_G0016003.1 mouse_genomes_project 1 51108007 51111045 - MGP_AJ_P0019803 Asnsd1 protein_coding protein_coding MGP_AJ_T0019804.1 MGP_AJ_G0016003.1 mouse_genomes_project 1 51110086 51112340 - Asnsd1 protein_coding retained_intron MGP_AJ_T0021985.1 MGP_AJ_G0016444.1 mouse_genomes_project 1 130306776 130312283 + MGP_AJ_P0021985 Rab29 protein_coding protein_coding MGP_AJ_T0021986.1 MGP_AJ_G0016444.1 mouse_genomes_project 1 130306792 130312431 + MGP_AJ_P0021986 Rab29 protein_coding protein_coding MGP_AJ_T0021987.1 MGP_AJ_G0016444.1 mouse_genomes_project 1 130307063 130312046 + MGP_AJ_P0021987 Rab29 protein_coding nonsense_mediated_decay MGP_AJ_T0021988.1 MGP_AJ_G0016444.1 mouse_genomes_project 1 130307205 130310518 + Rab29 protein_coding retained_intron MGP_AJ_T0011253.1 MGP_AJ_G0009375.1 mouse_genomes_project 1 96217695 96218007 + Gm25413 misc_RNA misc_RNA MGP_AJ_T0099152.1 MGP_AJ_G0037118.1 mouse_genomes_project 1 22688510 22688617 - Gm22260 snRNA snRNA MGP_AJ_T0002769.1 MGP_AJ_G0002630.1 mouse_genomes_project 1 18654156 18675098 - Gm28836 antisense antisense MGP_AJ_T0009505.1 MGP_AJ_G0007627.1 mouse_genomes_project 1 73132332 73132448 - Gm27943 miRNA miRNA MGP_AJ_T0012108.1 MGP_AJ_G0010203.1 mouse_genomes_project 1 75511249 75511541 + processed_pseudogene processed_pseudogene MGP_AJ_T0021265.1 MGP_AJ_G0016283.1 mouse_genomes_project 1 89371341 89398389 + MGP_AJ_P0021265 Ramp1 protein_coding protein_coding MGP_AJ_T0021266.1 MGP_AJ_G0016283.1 mouse_genomes_project 1 89371561 89398389 + MGP_AJ_P0021266 Ramp1 protein_coding protein_coding MGP_AJ_T0021267.1 MGP_AJ_G0016283.1 mouse_genomes_project 1 89371565 89417469 + MGP_AJ_P0021267 Ramp1 protein_coding protein_coding MGP_AJ_T0000358.1 MGP_AJ_G0000302.1 mouse_genomes_project 1 2995312 2997102 - TEC TEC MGP_AJ_T0011907.1 MGP_AJ_G0010002.1 mouse_genomes_project 1 16739997 16740469 - processed_pseudogene processed_pseudogene MGP_AJ_T0012284.1 MGP_AJ_G0010379.1 mouse_genomes_project 1 149938186 149939051 + processed_pseudogene processed_pseudogene MGP_AJ_T0005885.1 MGP_AJ_G0004934.1 mouse_genomes_project 1 119239645 119249091 - Gm29348 lincRNA lincRNA MGP_AJ_T0012207.1 MGP_AJ_G0010302.1 mouse_genomes_project 1 117178480 117178799 + processed_pseudogene processed_pseudogene MGP_AJ_T0012220.1 MGP_AJ_G0010315.1 mouse_genomes_project 1 120344547 120345857 - processed_pseudogene processed_pseudogene MGP_AJ_T0098516.1 MGP_AJ_G0036500.1 mouse_genomes_project 1 152772566 152772686 - n-R5s220 rRNA rRNA MGP_AJ_T0006046.1 MGP_AJ_G0005060.1 mouse_genomes_project 1 185799573 185802753 + 1700023G09Rik lincRNA lincRNA MGP_AJ_T0006047.1 MGP_AJ_G0005060.1 mouse_genomes_project 1 185799602 185801967 + 1700023G09Rik lincRNA lincRNA MGP_AJ_T0002929.1 MGP_AJ_G0002753.1 mouse_genomes_project 1 160507219 160518666 + 2810442N19Rik antisense antisense MGP_AJ_T0002930.1 MGP_AJ_G0002753.1 mouse_genomes_project 1 160507422 160518675 + 2810442N19Rik antisense antisense MGP_AJ_T0000533.1 MGP_AJ_G0000474.1 mouse_genomes_project 1 80053030 80054834 + TEC TEC MGP_AJ_T0021969.1 MGP_AJ_G0016440.1 mouse_genomes_project 1 130127385 130154288 + MGP_AJ_P0021969 Rab7b protein_coding protein_coding MGP_AJ_T0021970.1 MGP_AJ_G0016440.1 mouse_genomes_project 1 130127397 130151600 + MGP_AJ_P0021970 Rab7b protein_coding protein_coding MGP_AJ_T0021971.1 MGP_AJ_G0016440.1 mouse_genomes_project 1 130127428 130150512 + MGP_AJ_P0021971 Rab7b protein_coding protein_coding MGP_AJ_T0021972.1 MGP_AJ_G0016440.1 mouse_genomes_project 1 130127456 130150679 + MGP_AJ_P0021972 Rab7b protein_coding protein_coding MGP_AJ_T0021973.1 MGP_AJ_G0016440.1 mouse_genomes_project 1 130135244 130144287 + Rab7b protein_coding processed_transcript MGP_AJ_T0000492.1 MGP_AJ_G0000433.1 mouse_genomes_project 1 59728385 59729305 + TEC TEC MGP_AJ_T0000620.1 MGP_AJ_G0000561.1 mouse_genomes_project 1 128908066 128910360 + TEC TEC MGP_AJ_T0005680.1 MGP_AJ_G0004781.1 mouse_genomes_project 1 33569496 33573822 - Gm37146 lincRNA lincRNA MGP_AJ_T0098865.1 MGP_AJ_G0036849.1 mouse_genomes_project 1 49655515 49658014 - Gm28323 sense_intronic sense_intronic MGP_AJ_T0011984.1 MGP_AJ_G0010079.1 mouse_genomes_project 1 41113045 41113425 + processed_pseudogene processed_pseudogene MGP_AJ_T0100417.1 MGP_AJ_G0038383.1 mouse_genomes_project 1 37195324 37195642 + Gm24826 snoRNA snoRNA MGP_AJ_T0019481.1 MGP_AJ_G0015939.1 mouse_genomes_project 1 36856820 36950884 + MGP_AJ_P0019481 Npas2 protein_coding protein_coding MGP_AJ_T0019482.1 MGP_AJ_G0015939.1 mouse_genomes_project 1 36857301 37029952 + MGP_AJ_P0019482 Npas2 protein_coding protein_coding MGP_AJ_T0019483.1 MGP_AJ_G0015939.1 mouse_genomes_project 1 37005591 37009466 + Npas2 protein_coding processed_transcript MGP_AJ_T0002965.1 MGP_AJ_G0002781.1 mouse_genomes_project 1 179130630 179149256 + Gm31728 antisense antisense MGP_AJ_T0021043.1 MGP_AJ_G0016232.1 mouse_genomes_project 1 84602217 84629796 + MGP_AJ_P0021043 Cops7b protein_coding protein_coding MGP_AJ_T0021044.1 MGP_AJ_G0016232.1 mouse_genomes_project 1 84602251 84609604 + MGP_AJ_P0021044 Cops7b protein_coding protein_coding MGP_AJ_T0021045.1 MGP_AJ_G0016232.1 mouse_genomes_project 1 84607410 84626927 + MGP_AJ_P0021045 Cops7b protein_coding protein_coding MGP_AJ_T0021046.1 MGP_AJ_G0016232.1 mouse_genomes_project 1 84607441 84626753 + MGP_AJ_P0021046 Cops7b protein_coding nonsense_mediated_decay MGP_AJ_T0021047.1 MGP_AJ_G0016232.1 mouse_genomes_project 1 84607452 84627405 + MGP_AJ_P0021047 Cops7b protein_coding nonsense_mediated_decay MGP_AJ_T0021048.1 MGP_AJ_G0016232.1 mouse_genomes_project 1 84617050 84621591 + Cops7b protein_coding processed_transcript MGP_AJ_T0018898.1 MGP_AJ_G0015819.1 mouse_genomes_project 1 8743545 8941270 + MGP_AJ_P0018898 A830018L16Rik protein_coding protein_coding MGP_AJ_T0018899.1 MGP_AJ_G0015819.1 mouse_genomes_project 1 8743545 9274578 + MGP_AJ_P0018899 A830018L16Rik protein_coding protein_coding MGP_AJ_T0018900.1 MGP_AJ_G0015819.1 mouse_genomes_project 1 8743552 8857345 + A830018L16Rik protein_coding processed_transcript MGP_AJ_T0018901.1 MGP_AJ_G0015819.1 mouse_genomes_project 1 8743552 8876460 + A830018L16Rik protein_coding processed_transcript MGP_AJ_T0018902.1 MGP_AJ_G0015819.1 mouse_genomes_project 1 8743552 9220825 + MGP_AJ_P0018902 A830018L16Rik protein_coding nonsense_mediated_decay MGP_AJ_T0018903.1 MGP_AJ_G0015819.1 mouse_genomes_project 1 8743709 8941080 + MGP_AJ_P0018903 A830018L16Rik protein_coding protein_coding MGP_AJ_T0018904.1 MGP_AJ_G0015819.1 mouse_genomes_project 1 8743949 9274074 + MGP_AJ_P0018904 A830018L16Rik protein_coding protein_coding MGP_AJ_T0018905.1 MGP_AJ_G0015819.1 mouse_genomes_project 1 8743949 9274074 + MGP_AJ_P0018905 A830018L16Rik protein_coding protein_coding MGP_AJ_T0018906.1 MGP_AJ_G0015819.1 mouse_genomes_project 1 8857306 8939025 + MGP_AJ_P0018906 A830018L16Rik protein_coding protein_coding MGP_AJ_T0018907.1 MGP_AJ_G0015819.1 mouse_genomes_project 1 8918424 8935702 + A830018L16Rik protein_coding processed_transcript MGP_AJ_T0011257.1 MGP_AJ_G0009379.1 mouse_genomes_project 1 164008439 164008690 - Gm23599 misc_RNA misc_RNA MGP_AJ_T0012154.1 MGP_AJ_G0010249.1 mouse_genomes_project 1 98045965 98047811 - processed_pseudogene processed_pseudogene MGP_AJ_T0019067.1 MGP_AJ_G0015861.1 mouse_genomes_project 1 18815748 18818133 + MGP_AJ_P0019067 Khdc1b protein_coding protein_coding MGP_AJ_T0000391.1 MGP_AJ_G0000335.1 mouse_genomes_project 1 17028561 17031060 + TEC TEC MGP_AJ_T0023976.1 MGP_AJ_G0016877.1 mouse_genomes_project 1 181693716 181784429 + MGP_AJ_P0023976 Susd4 protein_coding protein_coding MGP_AJ_T0023977.1 MGP_AJ_G0016877.1 mouse_genomes_project 1 181693868 181825465 + MGP_AJ_P0023977 Susd4 protein_coding protein_coding MGP_AJ_T0023978.1 MGP_AJ_G0016877.1 mouse_genomes_project 1 181694251 181762946 + MGP_AJ_P0023978 Susd4 protein_coding protein_coding MGP_AJ_T0023979.1 MGP_AJ_G0016877.1 mouse_genomes_project 1 181694412 181762972 + MGP_AJ_P0023979 Susd4 protein_coding protein_coding MGP_AJ_T0023980.1 MGP_AJ_G0016877.1 mouse_genomes_project 1 181694751 181826824 + MGP_AJ_P0023980 Susd4 protein_coding protein_coding MGP_AJ_T0000600.1 MGP_AJ_G0000541.1 mouse_genomes_project 1 122216370 122219232 - TEC TEC MGP_AJ_T0005837.1 MGP_AJ_G0004895.1 mouse_genomes_project 1 89598784 89599935 - 1700020N18Rik lincRNA lincRNA MGP_AJ_T0000772.1 MGP_AJ_G0000710.1 mouse_genomes_project 1 181330006 181330764 - TEC TEC MGP_AJ_T0000773.1 MGP_AJ_G0000710.1 mouse_genomes_project 1 181330361 181330763 - TEC TEC MGP_AJ_T0019055.1 MGP_AJ_G0015855.1 mouse_genomes_project 1 18360367 18364274 + Efhc1 protein_coding processed_transcript MGP_AJ_T0019056.1 MGP_AJ_G0015855.1 mouse_genomes_project 1 18360429 18399092 + MGP_AJ_P0019056 Efhc1 protein_coding protein_coding MGP_AJ_T0020967.1 MGP_AJ_G0016215.1 mouse_genomes_project 1 83706723 83726595 - A630001G21Rik protein_coding processed_transcript MGP_AJ_T0020968.1 MGP_AJ_G0016215.1 mouse_genomes_project 1 83706723 83770454 - MGP_AJ_P0020968 A630001G21Rik protein_coding protein_coding MGP_AJ_T0020969.1 MGP_AJ_G0016215.1 mouse_genomes_project 1 83707329 83726643 - MGP_AJ_P0020969 A630001G21Rik protein_coding protein_coding MGP_AJ_T0020970.1 MGP_AJ_G0016215.1 mouse_genomes_project 1 83707332 83726595 - MGP_AJ_P0020970 A630001G21Rik protein_coding nonsense_mediated_decay MGP_AJ_T0020971.1 MGP_AJ_G0016215.1 mouse_genomes_project 1 83707730 83726568 - A630001G21Rik protein_coding processed_transcript MGP_AJ_T0020972.1 MGP_AJ_G0016215.1 mouse_genomes_project 1 83716254 83726575 - A630001G21Rik protein_coding processed_transcript MGP_AJ_T0005655.1 MGP_AJ_G0004758.1 mouse_genomes_project 1 14507013 14511714 + Gm28784 lincRNA lincRNA MGP_AJ_T0005739.1 MGP_AJ_G0004819.1 mouse_genomes_project 1 55181913 55200236 - 4930558J18Rik lincRNA lincRNA MGP_AJ_T0012009.1 MGP_AJ_G0010104.1 mouse_genomes_project 1 46082754 46083740 - processed_pseudogene processed_pseudogene MGP_AJ_T0100403.1 MGP_AJ_G0038369.1 mouse_genomes_project 1 12346570 12346690 - Gm26345 snoRNA snoRNA MGP_AJ_T0002812.1 MGP_AJ_G0002664.1 mouse_genomes_project 1 57046249 57063612 + Gm29017 antisense antisense MGP_AJ_T0020143.1 MGP_AJ_G0016062.1 mouse_genomes_project 1 58639658 58679829 + Cd28 protein_coding processed_transcript MGP_AJ_T0020144.1 MGP_AJ_G0016062.1 mouse_genomes_project 1 58663020 58690015 + MGP_AJ_P0020144 Cd28 protein_coding protein_coding MGP_AJ_T0020145.1 MGP_AJ_G0016062.1 mouse_genomes_project 1 58663064 58681292 + Cd28 protein_coding retained_intron MGP_AJ_T0009496.1 MGP_AJ_G0007618.1 mouse_genomes_project 1 61175657 61175795 - Gm24513 miRNA miRNA MGP_AJ_T0005716.1 MGP_AJ_G0004801.1 mouse_genomes_project 1 41446836 41447335 - Gm29156 lincRNA lincRNA MGP_AJ_T0022155.1 MGP_AJ_G0016479.1 mouse_genomes_project 1 132501822 132512816 + MGP_AJ_P0022155 Fmod protein_coding protein_coding MGP_AJ_T0022156.1 MGP_AJ_G0016479.1 mouse_genomes_project 1 132502064 132505043 + MGP_AJ_P0022156 Fmod protein_coding protein_coding MGP_AJ_T0021700.1 MGP_AJ_G0016378.1 mouse_genomes_project 1 117841148 117875592 - MGP_AJ_P0021700 Ralb protein_coding protein_coding MGP_AJ_T0021701.1 MGP_AJ_G0016378.1 mouse_genomes_project 1 117842988 117848919 - MGP_AJ_P0021701 Ralb protein_coding protein_coding MGP_AJ_T0021702.1 MGP_AJ_G0016378.1 mouse_genomes_project 1 117851972 117875592 - Ralb protein_coding retained_intron MGP_AJ_T0099232.1 MGP_AJ_G0037198.1 mouse_genomes_project 1 177505438 177505607 + Gm24405 snRNA snRNA MGP_AJ_T0006015.1 MGP_AJ_G0005037.1 mouse_genomes_project 1 180770936 180772552 - Gm5533 lincRNA lincRNA MGP_AJ_T0005905.1 MGP_AJ_G0004950.1 mouse_genomes_project 1 130785232 130793412 + F730311O21Rik lincRNA lincRNA MGP_AJ_T0023187.1 MGP_AJ_G0016680.1 mouse_genomes_project 1 164395340 164532865 - MGP_AJ_P0023187 Pou2f1 protein_coding protein_coding MGP_AJ_T0023188.1 MGP_AJ_G0016680.1 mouse_genomes_project 1 164395340 164465532 - MGP_AJ_P0023188 Pou2f1 protein_coding protein_coding MGP_AJ_T0023189.1 MGP_AJ_G0016680.1 mouse_genomes_project 1 164405609 164443940 - MGP_AJ_P0023189 Pou2f1 protein_coding protein_coding MGP_AJ_T0023190.1 MGP_AJ_G0016680.1 mouse_genomes_project 1 164405643 164532796 - MGP_AJ_P0023190 Pou2f1 protein_coding protein_coding MGP_AJ_T0023191.1 MGP_AJ_G0016680.1 mouse_genomes_project 1 164405643 164532809 - MGP_AJ_P0023191 Pou2f1 protein_coding protein_coding MGP_AJ_T0023192.1 MGP_AJ_G0016680.1 mouse_genomes_project 1 164405643 164532805 - MGP_AJ_P0023192 Pou2f1 protein_coding protein_coding MGP_AJ_T0023193.1 MGP_AJ_G0016680.1 mouse_genomes_project 1 164405647 164465532 - MGP_AJ_P0023193 Pou2f1 protein_coding protein_coding MGP_AJ_T0023194.1 MGP_AJ_G0016680.1 mouse_genomes_project 1 164405674 164410347 - MGP_AJ_P0023194 Pou2f1 protein_coding protein_coding MGP_AJ_T0023195.1 MGP_AJ_G0016680.1 mouse_genomes_project 1 164405770 164422776 - Pou2f1 protein_coding retained_intron MGP_AJ_T0023196.1 MGP_AJ_G0016680.1 mouse_genomes_project 1 164405794 164532816 - MGP_AJ_P0023196 Pou2f1 protein_coding protein_coding MGP_AJ_T0023197.1 MGP_AJ_G0016680.1 mouse_genomes_project 1 164405868 164465484 - MGP_AJ_P0023197 Pou2f1 protein_coding protein_coding MGP_AJ_T0023198.1 MGP_AJ_G0016680.1 mouse_genomes_project 1 164405924 164462591 - MGP_AJ_P0023198 Pou2f1 protein_coding protein_coding MGP_AJ_T0023199.1 MGP_AJ_G0016680.1 mouse_genomes_project 1 164410113 164465595 - Pou2f1 protein_coding retained_intron MGP_AJ_T0023200.1 MGP_AJ_G0016680.1 mouse_genomes_project 1 164410268 164465523 - Pou2f1 protein_coding retained_intron MGP_AJ_T0023201.1 MGP_AJ_G0016680.1 mouse_genomes_project 1 164421214 164532802 - Pou2f1 protein_coding retained_intron MGP_AJ_T0023202.1 MGP_AJ_G0016680.1 mouse_genomes_project 1 164441979 164532800 - MGP_AJ_P0023202 Pou2f1 protein_coding protein_coding MGP_AJ_T0023203.1 MGP_AJ_G0016680.1 mouse_genomes_project 1 164460240 164532816 - Pou2f1 protein_coding retained_intron MGP_AJ_T0023204.1 MGP_AJ_G0016680.1 mouse_genomes_project 1 164462282 164532796 - MGP_AJ_P0023204 Pou2f1 protein_coding protein_coding MGP_AJ_T0019288.1 MGP_AJ_G0015905.1 mouse_genomes_project 1 33928562 33962825 - MGP_AJ_P0019288 Kansl3 protein_coding protein_coding MGP_AJ_T0019289.1 MGP_AJ_G0015905.1 mouse_genomes_project 1 33928562 33962849 - MGP_AJ_P0019289 Kansl3 protein_coding protein_coding MGP_AJ_T0019290.1 MGP_AJ_G0015905.1 mouse_genomes_project 1 33930405 33962839 - MGP_AJ_P0019290 Kansl3 protein_coding nonsense_mediated_decay MGP_AJ_T0019291.1 MGP_AJ_G0015905.1 mouse_genomes_project 1 33930405 33961683 - MGP_AJ_P0019291 Kansl3 protein_coding protein_coding MGP_AJ_T0019292.1 MGP_AJ_G0015905.1 mouse_genomes_project 1 33948414 33961710 - MGP_AJ_P0019292 Kansl3 protein_coding nonsense_mediated_decay MGP_AJ_T0019293.1 MGP_AJ_G0015905.1 mouse_genomes_project 1 33951818 33962823 - MGP_AJ_P0019293 Kansl3 protein_coding nonsense_mediated_decay MGP_AJ_T0019294.1 MGP_AJ_G0015905.1 mouse_genomes_project 1 33959294 33961710 - MGP_AJ_P0019294 Kansl3 protein_coding protein_coding MGP_AJ_T0019295.1 MGP_AJ_G0015905.1 mouse_genomes_project 1 33959577 33962825 - Kansl3 protein_coding retained_intron MGP_AJ_T0019296.1 MGP_AJ_G0015905.1 mouse_genomes_project 1 33961634 33962770 - MGP_AJ_P0019296 Kansl3 protein_coding protein_coding MGP_AJ_T0021655.1 MGP_AJ_G0016373.1 mouse_genomes_project 1 116688824 116700742 + MGP_AJ_P0021655 Nifk protein_coding protein_coding MGP_AJ_T0021656.1 MGP_AJ_G0016373.1 mouse_genomes_project 1 116688839 116699861 + MGP_AJ_P0021656 Nifk protein_coding protein_coding MGP_AJ_T0021657.1 MGP_AJ_G0016373.1 mouse_genomes_project 1 116689138 116696300 + MGP_AJ_P0021657 Nifk protein_coding protein_coding MGP_AJ_T0011995.1 MGP_AJ_G0010090.1 mouse_genomes_project 1 42874915 42875853 + processed_pseudogene processed_pseudogene MGP_AJ_T0019768.1 MGP_AJ_G0015994.1 mouse_genomes_project 1 50609067 50613605 + Hibch protein_coding retained_intron MGP_AJ_T0019769.1 MGP_AJ_G0015994.1 mouse_genomes_project 1 50609182 50651760 + Hibch protein_coding retained_intron MGP_AJ_T0019770.1 MGP_AJ_G0015994.1 mouse_genomes_project 1 50609248 50687532 + MGP_AJ_P0019770 Hibch protein_coding protein_coding MGP_AJ_T0019771.1 MGP_AJ_G0015994.1 mouse_genomes_project 1 50616679 50627275 + Hibch protein_coding processed_transcript MGP_AJ_T0019772.1 MGP_AJ_G0015994.1 mouse_genomes_project 1 50631874 50661635 + Hibch protein_coding processed_transcript MGP_AJ_T0019773.1 MGP_AJ_G0015994.1 mouse_genomes_project 1 50662947 50680161 + Hibch protein_coding retained_intron MGP_AJ_T0019980.1 MGP_AJ_G0016037.1 mouse_genomes_project 1 56352858 56418721 - MGP_AJ_P0019980 Fam126b protein_coding protein_coding MGP_AJ_T0019981.1 MGP_AJ_G0016037.1 mouse_genomes_project 1 56357073 56418664 - MGP_AJ_P0019981 Fam126b protein_coding protein_coding MGP_AJ_T0019982.1 MGP_AJ_G0016037.1 mouse_genomes_project 1 56357795 56397045 - MGP_AJ_P0019982 Fam126b protein_coding nonsense_mediated_decay MGP_AJ_T0019983.1 MGP_AJ_G0016037.1 mouse_genomes_project 1 56359135 56418591 - MGP_AJ_P0019983 Fam126b protein_coding protein_coding MGP_AJ_T0019984.1 MGP_AJ_G0016037.1 mouse_genomes_project 1 56381957 56418673 - MGP_AJ_P0019984 Fam126b protein_coding protein_coding MGP_AJ_T0019985.1 MGP_AJ_G0016037.1 mouse_genomes_project 1 56387103 56418662 - Fam126b protein_coding processed_transcript MGP_AJ_T0019986.1 MGP_AJ_G0016037.1 mouse_genomes_project 1 56387130 56418675 - Fam126b protein_coding retained_intron MGP_AJ_T0019987.1 MGP_AJ_G0016037.1 mouse_genomes_project 1 56393521 56396311 - Fam126b protein_coding retained_intron MGP_AJ_T0019988.1 MGP_AJ_G0016037.1 mouse_genomes_project 1 56396694 56418695 - Fam126b protein_coding retained_intron MGP_AJ_T0020182.1 MGP_AJ_G0016069.1 mouse_genomes_project 1 61076487 61080149 + MGP_AJ_P0020182 Eef1b2 protein_coding protein_coding MGP_AJ_T0020183.1 MGP_AJ_G0016069.1 mouse_genomes_project 1 61076791 61079025 + MGP_AJ_P0020183 Eef1b2 protein_coding nonsense_mediated_decay MGP_AJ_T0020184.1 MGP_AJ_G0016069.1 mouse_genomes_project 1 61076792 61079319 + MGP_AJ_P0020184 Eef1b2 protein_coding protein_coding MGP_AJ_T0020185.1 MGP_AJ_G0016069.1 mouse_genomes_project 1 61076793 61078172 + Eef1b2 protein_coding processed_transcript MGP_AJ_T0020186.1 MGP_AJ_G0016069.1 mouse_genomes_project 1 61076807 61079285 + MGP_AJ_P0020186 Eef1b2 protein_coding nonsense_mediated_decay MGP_AJ_T0020187.1 MGP_AJ_G0016069.1 mouse_genomes_project 1 61076807 61079231 + MGP_AJ_P0020187 Eef1b2 protein_coding nonsense_mediated_decay MGP_AJ_T0020188.1 MGP_AJ_G0016069.1 mouse_genomes_project 1 61076809 61078086 + Eef1b2 protein_coding processed_transcript MGP_AJ_T0020189.1 MGP_AJ_G0016069.1 mouse_genomes_project 1 61076847 61078542 + MGP_AJ_P0020189 Eef1b2 protein_coding nonsense_mediated_decay MGP_AJ_T0020190.1 MGP_AJ_G0016069.1 mouse_genomes_project 1 61076885 61078561 + MGP_AJ_P0020190 Eef1b2 protein_coding nonsense_mediated_decay MGP_AJ_T0000732.1 MGP_AJ_G0000671.1 mouse_genomes_project 1 164970144 164971050 - TEC TEC MGP_AJ_T0005718.1 MGP_AJ_G0004803.1 mouse_genomes_project 1 44945413 44978980 + Gm28826 lincRNA lincRNA MGP_AJ_T0023224.1 MGP_AJ_G0016686.1 mouse_genomes_project 1 164913087 164938057 - MGP_AJ_P0023224 Pogk protein_coding protein_coding MGP_AJ_T0023225.1 MGP_AJ_G0016686.1 mouse_genomes_project 1 164920666 164937666 - MGP_AJ_P0023225 Pogk protein_coding protein_coding MGP_AJ_T0023226.1 MGP_AJ_G0016686.1 mouse_genomes_project 1 164922052 164938103 - MGP_AJ_P0023226 Pogk protein_coding protein_coding MGP_AJ_T0023227.1 MGP_AJ_G0016686.1 mouse_genomes_project 1 164923835 164938062 - MGP_AJ_P0023227 Pogk protein_coding nonsense_mediated_decay MGP_AJ_T0023228.1 MGP_AJ_G0016686.1 mouse_genomes_project 1 164924607 164938138 - MGP_AJ_P0023228 Pogk protein_coding protein_coding MGP_AJ_T0023229.1 MGP_AJ_G0016686.1 mouse_genomes_project 1 164931648 164937564 - MGP_AJ_P0023229 Pogk protein_coding protein_coding MGP_AJ_T0002857.1 MGP_AJ_G0002699.1 mouse_genomes_project 1 91523899 91535235 + Gm28535 antisense antisense MGP_AJ_T0011888.1 MGP_AJ_G0009983.1 mouse_genomes_project 1 9991180 9991867 + processed_pseudogene processed_pseudogene MGP_AJ_T0002935.1 MGP_AJ_G0002756.1 mouse_genomes_project 1 161791048 161797749 + Gm20471 antisense antisense MGP_AJ_T0000497.1 MGP_AJ_G0000438.1 mouse_genomes_project 1 64582207 64583947 - TEC TEC MGP_AJ_T0009547.1 MGP_AJ_G0007669.1 mouse_genomes_project 1 161186087 161186150 - Gm27616 miRNA miRNA MGP_AJ_T0021010.1 MGP_AJ_G0016225.1 mouse_genomes_project 1 84161087 84258031 + Armc9 protein_coding retained_intron MGP_AJ_T0021011.1 MGP_AJ_G0016225.1 mouse_genomes_project 1 84161091 84225422 + Armc9 protein_coding retained_intron MGP_AJ_T0021012.1 MGP_AJ_G0016225.1 mouse_genomes_project 1 84161091 84271553 + Armc9 protein_coding retained_intron MGP_AJ_T0021013.1 MGP_AJ_G0016225.1 mouse_genomes_project 1 84161093 84179022 + Armc9 protein_coding retained_intron MGP_AJ_T0021014.1 MGP_AJ_G0016225.1 mouse_genomes_project 1 84161105 84191103 + Armc9 protein_coding processed_transcript MGP_AJ_T0021015.1 MGP_AJ_G0016225.1 mouse_genomes_project 1 84161105 84288184 + MGP_AJ_P0021015 Armc9 protein_coding protein_coding MGP_AJ_T0021016.1 MGP_AJ_G0016225.1 mouse_genomes_project 1 84161106 84172305 + MGP_AJ_P0021016 Armc9 protein_coding protein_coding MGP_AJ_T0021017.1 MGP_AJ_G0016225.1 mouse_genomes_project 1 84161117 84289742 + MGP_AJ_P0021017 Armc9 protein_coding protein_coding MGP_AJ_T0021018.1 MGP_AJ_G0016225.1 mouse_genomes_project 1 84161122 84264206 + MGP_AJ_P0021018 Armc9 protein_coding protein_coding MGP_AJ_T0021019.1 MGP_AJ_G0016225.1 mouse_genomes_project 1 84161126 84187004 + Armc9 protein_coding retained_intron MGP_AJ_T0021020.1 MGP_AJ_G0016225.1 mouse_genomes_project 1 84207617 84264109 + MGP_AJ_P0021020 Armc9 protein_coding protein_coding MGP_AJ_T0021021.1 MGP_AJ_G0016225.1 mouse_genomes_project 1 84213740 84264206 + MGP_AJ_P0021021 Armc9 protein_coding protein_coding MGP_AJ_T0021022.1 MGP_AJ_G0016225.1 mouse_genomes_project 1 84256270 84280631 + MGP_AJ_P0021022 Armc9 protein_coding nonsense_mediated_decay MGP_AJ_T0000565.1 MGP_AJ_G0000506.1 mouse_genomes_project 1 90223104 90225610 - TEC TEC MGP_AJ_T0012310.1 MGP_AJ_G0010405.1 mouse_genomes_project 1 160323859 160325063 + processed_pseudogene processed_pseudogene MGP_AJ_T0099226.1 MGP_AJ_G0037192.1 mouse_genomes_project 1 170304269 170304376 - Gm22950 snRNA snRNA MGP_AJ_T0021911.1 MGP_AJ_G0016425.1 mouse_genomes_project 1 129260976 129286505 + MGP_AJ_P0021911 Pigr protein_coding protein_coding MGP_AJ_T0021912.1 MGP_AJ_G0016425.1 mouse_genomes_project 1 129261180 129278961 + MGP_AJ_P0021912 Pigr protein_coding protein_coding MGP_AJ_T0021913.1 MGP_AJ_G0016425.1 mouse_genomes_project 1 129263302 129278929 + MGP_AJ_P0021913 Pigr protein_coding protein_coding MGP_AJ_T0019496.1 MGP_AJ_G0015943.1 mouse_genomes_project 1 37227121 37253179 - MGP_AJ_P0019496 Rnf149 protein_coding protein_coding MGP_AJ_T0019497.1 MGP_AJ_G0015943.1 mouse_genomes_project 1 37228327 37253130 - MGP_AJ_P0019497 Rnf149 protein_coding nonsense_mediated_decay MGP_AJ_T0019498.1 MGP_AJ_G0015943.1 mouse_genomes_project 1 37231461 37234616 - Rnf149 protein_coding retained_intron MGP_AJ_T0019499.1 MGP_AJ_G0015943.1 mouse_genomes_project 1 37240955 37253077 - MGP_AJ_P0019499 Rnf149 protein_coding protein_coding MGP_AJ_T0012347.1 MGP_AJ_G0010442.1 mouse_genomes_project 1 179763257 179763706 + processed_pseudogene processed_pseudogene MGP_AJ_T0002921.1 MGP_AJ_G0002746.1 mouse_genomes_project 1 156955636 157025678 - Gm37679 antisense antisense MGP_AJ_T0021353.1 MGP_AJ_G0016302.1 mouse_genomes_project 1 90811965 90813077 + MGP_AJ_P0021353 Olfr1411 protein_coding protein_coding MGP_AJ_T0020164.1 MGP_AJ_G0016067.1 mouse_genomes_project 1 60859260 60990865 - MGP_AJ_P0020164 Ino80d protein_coding nonsense_mediated_decay MGP_AJ_T0020165.1 MGP_AJ_G0016067.1 mouse_genomes_project 1 60956884 61010391 - MGP_AJ_P0020165 Ino80d protein_coding protein_coding MGP_AJ_T0020166.1 MGP_AJ_G0016067.1 mouse_genomes_project 1 60959036 60962463 - Ino80d protein_coding retained_intron MGP_AJ_T0020167.1 MGP_AJ_G0016067.1 mouse_genomes_project 1 60961051 61013952 - MGP_AJ_P0020167 Ino80d protein_coding protein_coding MGP_AJ_T0020168.1 MGP_AJ_G0016067.1 mouse_genomes_project 1 60961065 61013873 - MGP_AJ_P0020168 Ino80d protein_coding protein_coding MGP_AJ_T0000376.1 MGP_AJ_G0000320.1 mouse_genomes_project 1 10568398 10570014 - TEC TEC MGP_AJ_T0020351.1 MGP_AJ_G0016104.1 mouse_genomes_project 1 67438833 67586960 - MGP_AJ_P0020351 Ikzf2 protein_coding protein_coding MGP_AJ_T0020352.1 MGP_AJ_G0016104.1 mouse_genomes_project 1 67439378 67588307 - MGP_AJ_P0020352 Ikzf2 protein_coding protein_coding MGP_AJ_T0020353.1 MGP_AJ_G0016104.1 mouse_genomes_project 1 67439564 67585237 - MGP_AJ_P0020353 Ikzf2 protein_coding protein_coding MGP_AJ_T0020354.1 MGP_AJ_G0016104.1 mouse_genomes_project 1 67439564 67588336 - MGP_AJ_P0020354 Ikzf2 protein_coding unknown_likely_coding MGP_AJ_T0020355.1 MGP_AJ_G0016104.1 mouse_genomes_project 1 67439564 67585237 - MGP_AJ_P0020355 Ikzf2 protein_coding protein_coding MGP_AJ_T0020356.1 MGP_AJ_G0016104.1 mouse_genomes_project 1 67439564 67585237 - MGP_AJ_P0020356 Ikzf2 protein_coding protein_coding MGP_AJ_T0020357.1 MGP_AJ_G0016104.1 mouse_genomes_project 1 67478359 67586374 - MGP_AJ_P0020357 Ikzf2 protein_coding protein_coding MGP_AJ_T0020358.1 MGP_AJ_G0016104.1 mouse_genomes_project 1 67582637 67585616 - Ikzf2 protein_coding retained_intron MGP_AJ_T0020359.1 MGP_AJ_G0016104.1 mouse_genomes_project 1 67582638 67588202 - Ikzf2 protein_coding retained_intron MGP_AJ_T0011258.1 MGP_AJ_G0009380.1 mouse_genomes_project 1 171268121 171268448 - Gm22383 misc_RNA misc_RNA MGP_AJ_T0012125.1 MGP_AJ_G0010220.1 mouse_genomes_project 1 81134139 81134979 + processed_pseudogene processed_pseudogene MGP_AJ_T0023081.1 MGP_AJ_G0016656.1 mouse_genomes_project 1 162452663 162502204 - MGP_AJ_P0023081 BC055324 protein_coding protein_coding MGP_AJ_T0023083.1 MGP_AJ_G0016656.1 mouse_genomes_project 1 162460424 162502204 - MGP_AJ_P0023083 BC055324 protein_coding protein_coding MGP_AJ_T0023084.1 MGP_AJ_G0016656.1 mouse_genomes_project 1 162460945 162468639 - MGP_AJ_P0023084 BC055324 protein_coding nonsense_mediated_decay MGP_AJ_T0023085.1 MGP_AJ_G0016656.1 mouse_genomes_project 1 162473725 162478933 - BC055324 protein_coding retained_intron MGP_AJ_T0023086.1 MGP_AJ_G0016656.1 mouse_genomes_project 1 162494297 162502172 - MGP_AJ_P0023086 BC055324 protein_coding nonsense_mediated_decay MGP_AJ_T0023087.1 MGP_AJ_G0016656.1 mouse_genomes_project 1 162497145 162501949 - BC055324 protein_coding processed_transcript MGP_AJ_T0005701.1 MGP_AJ_G0004797.1 mouse_genomes_project 1 40300365 40408814 - Pantr1 lincRNA lincRNA MGP_AJ_T0005702.1 MGP_AJ_G0004797.1 mouse_genomes_project 1 40361974 40407134 - Pantr1 lincRNA lincRNA MGP_AJ_T0005703.1 MGP_AJ_G0004797.1 mouse_genomes_project 1 40361980 40380712 - Pantr1 lincRNA lincRNA MGP_AJ_T0005704.1 MGP_AJ_G0004797.1 mouse_genomes_project 1 40361981 40408831 - Pantr1 lincRNA lincRNA MGP_AJ_T0005705.1 MGP_AJ_G0004797.1 mouse_genomes_project 1 40361981 40408831 - Pantr1 lincRNA lincRNA MGP_AJ_T0005706.1 MGP_AJ_G0004797.1 mouse_genomes_project 1 40361981 40407159 - Pantr1 lincRNA lincRNA MGP_AJ_T0005707.1 MGP_AJ_G0004797.1 mouse_genomes_project 1 40361981 40365460 - Pantr1 lincRNA lincRNA MGP_AJ_T0005708.1 MGP_AJ_G0004797.1 mouse_genomes_project 1 40361982 40381393 - Pantr1 lincRNA lincRNA MGP_AJ_T0005709.1 MGP_AJ_G0004797.1 mouse_genomes_project 1 40361982 40407099 - Pantr1 lincRNA lincRNA MGP_AJ_T0005710.1 MGP_AJ_G0004797.1 mouse_genomes_project 1 40362159 40380633 - Pantr1 lincRNA lincRNA MGP_AJ_T0005711.1 MGP_AJ_G0004797.1 mouse_genomes_project 1 40380572 40408848 - Pantr1 lincRNA lincRNA MGP_AJ_T0005712.1 MGP_AJ_G0004797.1 mouse_genomes_project 1 40407032 40408831 - Pantr1 lincRNA lincRNA MGP_AJ_T0002915.1 MGP_AJ_G0002740.1 mouse_genomes_project 1 152195927 152201700 - Gm28513 antisense antisense MGP_AJ_T0100438.1 MGP_AJ_G0038404.1 mouse_genomes_project 1 65148880 65149009 + Gm26342 snoRNA snoRNA MGP_AJ_T0002987.1 MGP_AJ_G0002800.1 mouse_genomes_project 1 189056279 189103163 + Prox1os antisense antisense MGP_AJ_T0018811.1 MGP_AJ_G0015807.1 mouse_genomes_project 1 6906795 6933525 + MGP_AJ_P0018811 3110035E14Rik protein_coding protein_coding MGP_AJ_T0018838.1 MGP_AJ_G0015813.1 mouse_genomes_project 1 7289380 7330762 - MGP_AJ_P0018838 Ppp1r42 protein_coding protein_coding MGP_AJ_T0018839.1 MGP_AJ_G0015813.1 mouse_genomes_project 1 7289380 7307428 - MGP_AJ_P0018839 Ppp1r42 protein_coding protein_coding MGP_AJ_T0018840.1 MGP_AJ_G0015813.1 mouse_genomes_project 1 7289380 7325069 - MGP_AJ_P0018840 Ppp1r42 protein_coding nonsense_mediated_decay MGP_AJ_T0018841.1 MGP_AJ_G0015813.1 mouse_genomes_project 1 7289579 7330756 - MGP_AJ_P0018841 Ppp1r42 protein_coding nonsense_mediated_decay MGP_AJ_T0018842.1 MGP_AJ_G0015813.1 mouse_genomes_project 1 7299550 7330756 - MGP_AJ_P0018842 Ppp1r42 protein_coding protein_coding MGP_AJ_T0018843.1 MGP_AJ_G0015813.1 mouse_genomes_project 1 7316778 7330756 - Ppp1r42 protein_coding retained_intron MGP_AJ_T0005687.1 MGP_AJ_G0004787.1 mouse_genomes_project 1 35788433 35816189 + Gm5099 lincRNA lincRNA MGP_AJ_T0002944.1 MGP_AJ_G0002764.1 mouse_genomes_project 1 166511057 166630873 + Gm20711 antisense antisense MGP_AJ_T0005858.1 MGP_AJ_G0004913.1 mouse_genomes_project 1 100277114 100279248 - Gm28187 lincRNA lincRNA MGP_AJ_T0012234.1 MGP_AJ_G0010329.1 mouse_genomes_project 1 126848359 126848667 - processed_pseudogene processed_pseudogene MGP_AJ_T0016995.1 MGP_AJ_G0015073.1 mouse_genomes_project 1 61100112 61107412 + Platr12 processed_transcript antisense MGP_AJ_T0016996.1 MGP_AJ_G0015073.1 mouse_genomes_project 1 61100507 61107765 + Platr12 processed_transcript lincRNA MGP_AJ_T0005875.1 MGP_AJ_G0004927.1 mouse_genomes_project 1 117700195 117710193 + Gm29455 lincRNA lincRNA MGP_AJ_T0005876.1 MGP_AJ_G0004927.1 mouse_genomes_project 1 117700237 117756863 + Gm29455 lincRNA lincRNA MGP_AJ_T0002820.1 MGP_AJ_G0002670.1 mouse_genomes_project 1 60613159 60616498 - Gm29083 antisense antisense MGP_AJ_T0012145.1 MGP_AJ_G0010240.1 mouse_genomes_project 1 91524629 91525175 - processed_pseudogene processed_pseudogene MGP_AJ_T0024265.1 MGP_AJ_G0016935.1 mouse_genomes_project 1 191744178 191888691 - MGP_AJ_P0024265 Syt14 protein_coding protein_coding MGP_AJ_T0024266.1 MGP_AJ_G0016935.1 mouse_genomes_project 1 191748931 191888578 - MGP_AJ_P0024266 Syt14 protein_coding nonsense_mediated_decay MGP_AJ_T0024267.1 MGP_AJ_G0016935.1 mouse_genomes_project 1 191750155 191888633 - MGP_AJ_P0024267 Syt14 protein_coding protein_coding MGP_AJ_T0024268.1 MGP_AJ_G0016935.1 mouse_genomes_project 1 191784080 191888560 - Syt14 protein_coding retained_intron MGP_AJ_T0098502.1 MGP_AJ_G0036486.1 mouse_genomes_project 1 71722148 71722274 + Gm25329 rRNA rRNA MGP_AJ_T0019914.1 MGP_AJ_G0016026.1 mouse_genomes_project 1 55777222 55792206 - MGP_AJ_P0019914 Kctd18 protein_coding protein_coding MGP_AJ_T0019915.1 MGP_AJ_G0016026.1 mouse_genomes_project 1 55777369 55792250 - MGP_AJ_P0019915 Kctd18 protein_coding protein_coding MGP_AJ_T0019916.1 MGP_AJ_G0016026.1 mouse_genomes_project 1 55777374 55791646 - MGP_AJ_P0019916 Kctd18 protein_coding nonsense_mediated_decay MGP_AJ_T0019917.1 MGP_AJ_G0016026.1 mouse_genomes_project 1 55778193 55840790 - MGP_AJ_P0019917 Kctd18 protein_coding nonsense_mediated_decay MGP_AJ_T0019918.1 MGP_AJ_G0016026.1 mouse_genomes_project 1 55778701 55792170 - MGP_AJ_P0019918 Kctd18 protein_coding protein_coding MGP_AJ_T0019919.1 MGP_AJ_G0016026.1 mouse_genomes_project 1 55778813 55785569 - Kctd18 protein_coding retained_intron MGP_AJ_T0019920.1 MGP_AJ_G0016026.1 mouse_genomes_project 1 55778841 55784224 - Kctd18 protein_coding retained_intron MGP_AJ_T0019921.1 MGP_AJ_G0016026.1 mouse_genomes_project 1 55782175 55792174 - Kctd18 protein_coding retained_intron MGP_AJ_T0019922.1 MGP_AJ_G0016026.1 mouse_genomes_project 1 55783279 55785103 - Kctd18 protein_coding retained_intron MGP_AJ_T0019923.1 MGP_AJ_G0016026.1 mouse_genomes_project 1 55785687 55792201 - Kctd18 protein_coding retained_intron MGP_AJ_T0019924.1 MGP_AJ_G0016026.1 mouse_genomes_project 1 55785723 55792201 - Kctd18 protein_coding retained_intron MGP_AJ_T0012132.1 MGP_AJ_G0010227.1 mouse_genomes_project 1 84792976 84793398 - processed_pseudogene processed_pseudogene MGP_AJ_T0023768.1 MGP_AJ_G0016836.1 mouse_genomes_project 1 177824539 178402608 - MGP_AJ_P0023768 Smyd3 protein_coding protein_coding MGP_AJ_T0023769.1 MGP_AJ_G0016836.1 mouse_genomes_project 1 177827647 178129297 - Smyd3 protein_coding processed_transcript MGP_AJ_T0023770.1 MGP_AJ_G0016836.1 mouse_genomes_project 1 177827752 178258737 - Smyd3 protein_coding processed_transcript MGP_AJ_T0023771.1 MGP_AJ_G0016836.1 mouse_genomes_project 1 177829845 177865454 - Smyd3 protein_coding processed_transcript MGP_AJ_T0023772.1 MGP_AJ_G0016836.1 mouse_genomes_project 1 178261938 178287297 - Smyd3 protein_coding processed_transcript MGP_AJ_T0023773.1 MGP_AJ_G0016836.1 mouse_genomes_project 1 178276227 178402615 - MGP_AJ_P0023773 Smyd3 protein_coding protein_coding MGP_AJ_T0023774.1 MGP_AJ_G0016836.1 mouse_genomes_project 1 178390232 178402579 - MGP_AJ_P0023774 Smyd3 protein_coding protein_coding MGP_AJ_T0019726.1 MGP_AJ_G0015989.1 mouse_genomes_project 1 49943584 50012956 - MGP_AJ_P0019726 Gls protein_coding protein_coding MGP_AJ_T0019727.1 MGP_AJ_G0015989.1 mouse_genomes_project 1 49946077 50012029 - MGP_AJ_P0019727 Gls protein_coding protein_coding MGP_AJ_T0019728.1 MGP_AJ_G0015989.1 mouse_genomes_project 1 49946264 49971032 - MGP_AJ_P0019728 Gls protein_coding protein_coding MGP_AJ_T0019729.1 MGP_AJ_G0015989.1 mouse_genomes_project 1 49946400 49949112 - Gls protein_coding retained_intron MGP_AJ_T0019730.1 MGP_AJ_G0015989.1 mouse_genomes_project 1 49946418 49949282 - Gls protein_coding retained_intron MGP_AJ_T0019731.1 MGP_AJ_G0015989.1 mouse_genomes_project 1 49948583 49971033 - Gls protein_coding retained_intron MGP_AJ_T0019732.1 MGP_AJ_G0015989.1 mouse_genomes_project 1 49964226 50012965 - MGP_AJ_P0019732 Gls protein_coding protein_coding MGP_AJ_T0019733.1 MGP_AJ_G0015989.1 mouse_genomes_project 1 49965402 49980602 - Gls protein_coding retained_intron MGP_AJ_T0019734.1 MGP_AJ_G0015989.1 mouse_genomes_project 1 49965402 49991944 - MGP_AJ_P0019734 Gls protein_coding protein_coding MGP_AJ_T0019735.1 MGP_AJ_G0015989.1 mouse_genomes_project 1 49967805 49971032 - MGP_AJ_P0019735 Gls protein_coding protein_coding MGP_AJ_T0019736.1 MGP_AJ_G0015989.1 mouse_genomes_project 1 49969590 49977497 - Gls protein_coding retained_intron MGP_AJ_T0019737.1 MGP_AJ_G0015989.1 mouse_genomes_project 1 49971322 49995328 - Gls protein_coding processed_transcript MGP_AJ_T0019738.1 MGP_AJ_G0015989.1 mouse_genomes_project 1 49976600 49980494 - Gls protein_coding retained_intron MGP_AJ_T0019739.1 MGP_AJ_G0015989.1 mouse_genomes_project 1 49984289 49995328 - Gls protein_coding retained_intron MGP_AJ_T0019740.1 MGP_AJ_G0015989.1 mouse_genomes_project 1 49985300 49994267 - Gls protein_coding retained_intron MGP_AJ_T0019741.1 MGP_AJ_G0015989.1 mouse_genomes_project 1 49987420 49995677 - Gls protein_coding retained_intron MGP_AJ_T0019742.1 MGP_AJ_G0015989.1 mouse_genomes_project 1 49994251 50012544 - Gls protein_coding processed_transcript MGP_AJ_T0011998.1 MGP_AJ_G0010093.1 mouse_genomes_project 1 43280620 43281405 + processed_pseudogene processed_pseudogene MGP_AJ_T0022029.1 MGP_AJ_G0016451.1 mouse_genomes_project 1 130672025 130672745 - MGP_AJ_P0022029 Gm10188 protein_coding protein_coding MGP_AJ_T0011951.1 MGP_AJ_G0010046.1 mouse_genomes_project 1 30814247 30815940 + processed_pseudogene processed_pseudogene MGP_AJ_T0012291.1 MGP_AJ_G0010386.1 mouse_genomes_project 1 152067802 152068872 - processed_pseudogene processed_pseudogene MGP_AJ_T0012101.1 MGP_AJ_G0010196.1 mouse_genomes_project 1 71286816 71287150 - processed_pseudogene processed_pseudogene MGP_AJ_T0000590.1 MGP_AJ_G0000531.1 mouse_genomes_project 1 119694721 119697779 + TEC TEC MGP_AJ_T0022369.1 MGP_AJ_G0016525.1 mouse_genomes_project 1 134974698 135004191 + Kif14 protein_coding retained_intron MGP_AJ_T0022370.1 MGP_AJ_G0016525.1 mouse_genomes_project 1 134976290 135041220 + MGP_AJ_P0022370 Kif14 protein_coding protein_coding MGP_AJ_T0022371.1 MGP_AJ_G0016525.1 mouse_genomes_project 1 134976290 135037355 + MGP_AJ_P0022371 Kif14 protein_coding nonsense_mediated_decay MGP_AJ_T0022372.1 MGP_AJ_G0016525.1 mouse_genomes_project 1 134976313 135041220 + MGP_AJ_P0022372 Kif14 protein_coding protein_coding MGP_AJ_T0022373.1 MGP_AJ_G0016525.1 mouse_genomes_project 1 134977358 134980077 + Kif14 protein_coding retained_intron MGP_AJ_T0022374.1 MGP_AJ_G0016525.1 mouse_genomes_project 1 134984598 134988174 + Kif14 protein_coding processed_transcript MGP_AJ_T0022375.1 MGP_AJ_G0016525.1 mouse_genomes_project 1 134984598 134988174 + Kif14 protein_coding processed_transcript MGP_AJ_T0022376.1 MGP_AJ_G0016525.1 mouse_genomes_project 1 134984598 134988174 + MGP_AJ_P0022376 Kif14 protein_coding protein_coding MGP_AJ_T0000468.1 MGP_AJ_G0000409.1 mouse_genomes_project 1 51953605 51956216 - TEC TEC MGP_AJ_T0100420.1 MGP_AJ_G0038386.1 mouse_genomes_project 1 40579485 40579619 - Gm23126 snoRNA snoRNA MGP_AJ_T0022249.1 MGP_AJ_G0016502.1 mouse_genomes_project 1 133750008 133755006 - MGP_AJ_P0022249 Elf3 protein_coding protein_coding MGP_AJ_T0022250.1 MGP_AJ_G0016502.1 mouse_genomes_project 1 133750012 133754876 - MGP_AJ_P0022250 Elf3 protein_coding protein_coding MGP_AJ_T0022251.1 MGP_AJ_G0016502.1 mouse_genomes_project 1 133753103 133754096 - Elf3 protein_coding retained_intron MGP_AJ_T0021292.1 MGP_AJ_G0016288.1 mouse_genomes_project 1 89559901 89567689 + MGP_AJ_P0021292 Fam132b protein_coding protein_coding MGP_AJ_T0021293.1 MGP_AJ_G0016288.1 mouse_genomes_project 1 89564165 89567564 + MGP_AJ_P0021293 Fam132b protein_coding protein_coding MGP_AJ_T0023765.1 MGP_AJ_G0016835.1 mouse_genomes_project 1 177392029 177588844 + Kif26b protein_coding retained_intron MGP_AJ_T0023766.1 MGP_AJ_G0016835.1 mouse_genomes_project 1 177392029 177811418 + MGP_AJ_P0023766 Kif26b protein_coding protein_coding MGP_AJ_T0023767.1 MGP_AJ_G0016835.1 mouse_genomes_project 1 177669355 177805066 + MGP_AJ_P0023767 Kif26b protein_coding protein_coding MGP_AJ_T0005689.1 MGP_AJ_G0004789.1 mouse_genomes_project 1 37513798 37520370 - 1700066B17Rik lincRNA lincRNA MGP_AJ_T0005690.1 MGP_AJ_G0004789.1 mouse_genomes_project 1 37517151 37522001 - 1700066B17Rik lincRNA lincRNA MGP_AJ_T0005691.1 MGP_AJ_G0004789.1 mouse_genomes_project 1 37517156 37522005 - 1700066B17Rik lincRNA lincRNA MGP_AJ_T0012088.1 MGP_AJ_G0010183.1 mouse_genomes_project 1 64675645 64678179 + processed_pseudogene processed_pseudogene MGP_AJ_T0000410.1 MGP_AJ_G0000352.1 mouse_genomes_project 1 23071157 23075152 - TEC TEC MGP_AJ_T0009569.1 MGP_AJ_G0007691.1 mouse_genomes_project 1 193915682 193915763 + Mir29b-2 miRNA miRNA MGP_AJ_T0021996.1 MGP_AJ_G0016447.1 mouse_genomes_project 1 130449613 130468467 + MGP_AJ_P0021996 Elk4 protein_coding protein_coding MGP_AJ_T0021997.1 MGP_AJ_G0016447.1 mouse_genomes_project 1 130449881 130465655 + MGP_AJ_P0021997 Elk4 protein_coding protein_coding MGP_AJ_T0021998.1 MGP_AJ_G0016447.1 mouse_genomes_project 1 130450104 130456600 + Elk4 protein_coding processed_transcript MGP_AJ_T0021999.1 MGP_AJ_G0016447.1 mouse_genomes_project 1 130450114 130456458 + Elk4 protein_coding processed_transcript MGP_AJ_T0022000.1 MGP_AJ_G0016447.1 mouse_genomes_project 1 130450302 130460299 + MGP_AJ_P0022000 Elk4 protein_coding protein_coding MGP_AJ_T0022001.1 MGP_AJ_G0016447.1 mouse_genomes_project 1 130459801 130474606 + MGP_AJ_P0022001 Elk4 protein_coding nonsense_mediated_decay MGP_AJ_T0022002.1 MGP_AJ_G0016447.1 mouse_genomes_project 1 130460436 130473688 + Elk4 protein_coding processed_transcript MGP_AJ_T0000416.1 MGP_AJ_G0000358.1 mouse_genomes_project 1 23198328 23201946 - TEC TEC MGP_AJ_T0002916.1 MGP_AJ_G0002741.1 mouse_genomes_project 1 153711488 153713344 + Gm37622 antisense antisense MGP_AJ_T0011931.1 MGP_AJ_G0010026.1 mouse_genomes_project 1 25321858 25322512 - processed_pseudogene processed_pseudogene MGP_AJ_T0023860.1 MGP_AJ_G0016850.1 mouse_genomes_project 1 179516840 179569229 + MGP_AJ_P0023860 Lin9 protein_coding protein_coding MGP_AJ_T0023861.1 MGP_AJ_G0016850.1 mouse_genomes_project 1 179517024 179569236 + MGP_AJ_P0023861 Lin9 protein_coding protein_coding MGP_AJ_T0023862.1 MGP_AJ_G0016850.1 mouse_genomes_project 1 179517043 179560036 + Lin9 protein_coding retained_intron MGP_AJ_T0023863.1 MGP_AJ_G0016850.1 mouse_genomes_project 1 179517045 179524882 + Lin9 protein_coding processed_transcript MGP_AJ_T0023864.1 MGP_AJ_G0016850.1 mouse_genomes_project 1 179517050 179569229 + MGP_AJ_P0023864 Lin9 protein_coding nonsense_mediated_decay MGP_AJ_T0023865.1 MGP_AJ_G0016850.1 mouse_genomes_project 1 179517056 179552295 + Lin9 protein_coding retained_intron MGP_AJ_T0023866.1 MGP_AJ_G0016850.1 mouse_genomes_project 1 179538879 179551349 + MGP_AJ_P0023866 Lin9 protein_coding nonsense_mediated_decay MGP_AJ_T0023867.1 MGP_AJ_G0016850.1 mouse_genomes_project 1 179557869 179567417 + Lin9 protein_coding retained_intron MGP_AJ_T0023868.1 MGP_AJ_G0016850.1 mouse_genomes_project 1 179559296 179569229 + Lin9 protein_coding retained_intron MGP_AJ_T0000498.1 MGP_AJ_G0000439.1 mouse_genomes_project 1 64657391 64660494 - TEC TEC MGP_AJ_T0002918.1 MGP_AJ_G0002743.1 mouse_genomes_project 1 154768528 154770022 + 4930518J20Rik antisense antisense MGP_AJ_T0000766.1 MGP_AJ_G0000704.1 mouse_genomes_project 1 180292465 180293776 + TEC TEC MGP_AJ_T0000359.1 MGP_AJ_G0000303.1 mouse_genomes_project 1 4023806 4026779 - TEC TEC MGP_AJ_T0000471.1 MGP_AJ_G0000412.1 mouse_genomes_project 1 52717104 52719853 - TEC TEC MGP_AJ_T0021413.1 MGP_AJ_G0016316.1 mouse_genomes_project 1 91366430 91376031 - MGP_AJ_P0021413 2310007B03Rik protein_coding protein_coding MGP_AJ_T0021414.1 MGP_AJ_G0016316.1 mouse_genomes_project 1 91366664 91375953 - MGP_AJ_P0021414 2310007B03Rik protein_coding protein_coding MGP_AJ_T0012168.1 MGP_AJ_G0010263.1 mouse_genomes_project 1 102881158 102882226 + processed_pseudogene processed_pseudogene MGP_AJ_T0020196.1 MGP_AJ_G0016072.1 mouse_genomes_project 1 61360330 61488320 + MGP_AJ_P0020196 Adam23 protein_coding protein_coding MGP_AJ_T0020197.1 MGP_AJ_G0016072.1 mouse_genomes_project 1 61360334 61512527 + MGP_AJ_P0020197 Adam23 protein_coding protein_coding MGP_AJ_T0020198.1 MGP_AJ_G0016072.1 mouse_genomes_project 1 61360349 61484208 + Adam23 protein_coding retained_intron MGP_AJ_T0020199.1 MGP_AJ_G0016072.1 mouse_genomes_project 1 61360374 61448021 + Adam23 protein_coding retained_intron MGP_AJ_T0020200.1 MGP_AJ_G0016072.1 mouse_genomes_project 1 61360651 61509167 + MGP_AJ_P0020200 Adam23 protein_coding protein_coding MGP_AJ_T0020201.1 MGP_AJ_G0016072.1 mouse_genomes_project 1 61360651 61512527 + MGP_AJ_P0020201 Adam23 protein_coding protein_coding MGP_AJ_T0020202.1 MGP_AJ_G0016072.1 mouse_genomes_project 1 61385126 61460858 + Adam23 protein_coding processed_transcript MGP_AJ_T0020203.1 MGP_AJ_G0016072.1 mouse_genomes_project 1 61408675 61512527 + Adam23 protein_coding processed_transcript MGP_AJ_T0020204.1 MGP_AJ_G0016072.1 mouse_genomes_project 1 61452148 61455672 + Adam23 protein_coding retained_intron MGP_AJ_T0020205.1 MGP_AJ_G0016072.1 mouse_genomes_project 1 61470294 61482024 + Adam23 protein_coding retained_intron MGP_AJ_T0020206.1 MGP_AJ_G0016072.1 mouse_genomes_project 1 61495045 61498433 + Adam23 protein_coding retained_intron MGP_AJ_T0020207.1 MGP_AJ_G0016072.1 mouse_genomes_project 1 61501272 61509061 + Adam23 protein_coding retained_intron MGP_AJ_T0021809.1 MGP_AJ_G0016402.1 mouse_genomes_project 1 125543872 125727888 + Mgat5 protein_coding retained_intron MGP_AJ_T0021810.1 MGP_AJ_G0016402.1 mouse_genomes_project 1 125543875 125829227 + MGP_AJ_P0021810 Mgat5 protein_coding protein_coding MGP_AJ_T0021811.1 MGP_AJ_G0016402.1 mouse_genomes_project 1 125543885 125737495 + Mgat5 protein_coding retained_intron MGP_AJ_T0021812.1 MGP_AJ_G0016402.1 mouse_genomes_project 1 125645913 125824528 + MGP_AJ_P0021812 Mgat5 protein_coding protein_coding MGP_AJ_T0024168.1 MGP_AJ_G0016914.1 mouse_genomes_project 1 189910107 189915961 - Mfsd7b protein_coding retained_intron MGP_AJ_T0024169.1 MGP_AJ_G0016914.1 mouse_genomes_project 1 189910107 189930006 - MGP_AJ_P0024169 Mfsd7b protein_coding protein_coding MGP_AJ_T0024170.1 MGP_AJ_G0016914.1 mouse_genomes_project 1 189910109 189929815 - MGP_AJ_P0024170 Mfsd7b protein_coding nonsense_mediated_decay MGP_AJ_T0024171.1 MGP_AJ_G0016914.1 mouse_genomes_project 1 189910110 189912716 - Mfsd7b protein_coding retained_intron MGP_AJ_T0024172.1 MGP_AJ_G0016914.1 mouse_genomes_project 1 189917029 189919260 - Mfsd7b protein_coding retained_intron MGP_AJ_T0024173.1 MGP_AJ_G0016914.1 mouse_genomes_project 1 189928756 189929972 - MGP_AJ_P0024173 Mfsd7b protein_coding protein_coding MGP_AJ_T0000525.1 MGP_AJ_G0000466.1 mouse_genomes_project 1 78093654 78095483 - TEC TEC MGP_AJ_T0100415.1 MGP_AJ_G0038381.1 mouse_genomes_project 1 32763889 32764018 - Gm25096 snoRNA snoRNA MGP_AJ_T0101679.1 MGP_AJ_G0039642.1 mouse_genomes_project 1 114007300 114023365 - transcribed_processed_pseudogene processed_transcript MGP_AJ_T0101680.1 MGP_AJ_G0039642.1 mouse_genomes_project 1 114007715 114008902 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0101681.1 MGP_AJ_G0039642.1 mouse_genomes_project 1 114008143 114023370 - transcribed_processed_pseudogene processed_transcript MGP_AJ_T0005863.1 MGP_AJ_G0004917.1 mouse_genomes_project 1 104753942 104755763 - A530053M12Rik lincRNA lincRNA MGP_AJ_T0011943.1 MGP_AJ_G0010038.1 mouse_genomes_project 1 28689690 28689915 + processed_pseudogene processed_pseudogene MGP_AJ_T0021586.1 MGP_AJ_G0016352.1 mouse_genomes_project 1 104140625 104206052 + MGP_AJ_P0021586 Tnfrsf11a protein_coding protein_coding MGP_AJ_T0021587.1 MGP_AJ_G0016352.1 mouse_genomes_project 1 104140657 104175346 + Tnfrsf11a protein_coding retained_intron MGP_AJ_T0021588.1 MGP_AJ_G0016352.1 mouse_genomes_project 1 104180800 104186330 + Tnfrsf11a protein_coding retained_intron MGP_AJ_T0020240.1 MGP_AJ_G0016082.1 mouse_genomes_project 1 62683508 62851716 - MGP_AJ_P0020240 Plekhm3 protein_coding nonsense_mediated_decay MGP_AJ_T0020241.1 MGP_AJ_G0016082.1 mouse_genomes_project 1 62686646 62851716 - MGP_AJ_P0020241 Plekhm3 protein_coding protein_coding MGP_AJ_T0020242.1 MGP_AJ_G0016082.1 mouse_genomes_project 1 62691334 62732301 - Plekhm3 protein_coding processed_transcript MGP_AJ_T0020243.1 MGP_AJ_G0016082.1 mouse_genomes_project 1 62755817 62823045 - Plekhm3 protein_coding retained_intron MGP_AJ_T0020244.1 MGP_AJ_G0016082.1 mouse_genomes_project 1 62832766 62851667 - MGP_AJ_P0020244 Plekhm3 protein_coding protein_coding MGP_AJ_T0020245.1 MGP_AJ_G0016082.1 mouse_genomes_project 1 62848055 62851619 - Plekhm3 protein_coding processed_transcript MGP_AJ_T0019353.1 MGP_AJ_G0015917.1 mouse_genomes_project 1 34402665 34549937 - MGP_AJ_P0019353 Tmem131 protein_coding protein_coding MGP_AJ_T0019354.1 MGP_AJ_G0015917.1 mouse_genomes_project 1 34402668 34550232 - MGP_AJ_P0019354 Tmem131 protein_coding protein_coding MGP_AJ_T0019355.1 MGP_AJ_G0015917.1 mouse_genomes_project 1 34411475 34427167 - Tmem131 protein_coding retained_intron MGP_AJ_T0019356.1 MGP_AJ_G0015917.1 mouse_genomes_project 1 34418646 34420638 - Tmem131 protein_coding retained_intron MGP_AJ_T0019357.1 MGP_AJ_G0015917.1 mouse_genomes_project 1 34424234 34429346 - MGP_AJ_P0019357 Tmem131 protein_coding protein_coding MGP_AJ_T0019358.1 MGP_AJ_G0015917.1 mouse_genomes_project 1 34426002 34429737 - MGP_AJ_P0019358 Tmem131 protein_coding protein_coding MGP_AJ_T0019359.1 MGP_AJ_G0015917.1 mouse_genomes_project 1 34429244 34435213 - MGP_AJ_P0019359 Tmem131 protein_coding nonsense_mediated_decay MGP_AJ_T0019360.1 MGP_AJ_G0015917.1 mouse_genomes_project 1 34452090 34554047 - MGP_AJ_P0019360 Tmem131 protein_coding protein_coding MGP_AJ_T0005992.1 MGP_AJ_G0005019.1 mouse_genomes_project 1 168673026 168675398 - Gm37502 lincRNA lincRNA MGP_AJ_T0022269.1 MGP_AJ_G0016507.1 mouse_genomes_project 1 133884609 133934755 - MGP_AJ_P0022269 Ipo9 protein_coding protein_coding MGP_AJ_T0022270.1 MGP_AJ_G0016507.1 mouse_genomes_project 1 133886759 133934714 - MGP_AJ_P0022270 Ipo9 protein_coding nonsense_mediated_decay MGP_AJ_T0022271.1 MGP_AJ_G0016507.1 mouse_genomes_project 1 133886759 133934747 - MGP_AJ_P0022271 Ipo9 protein_coding nonsense_mediated_decay MGP_AJ_T0022272.1 MGP_AJ_G0016507.1 mouse_genomes_project 1 133887402 133890931 - MGP_AJ_P0022272 Ipo9 protein_coding protein_coding MGP_AJ_T0022273.1 MGP_AJ_G0016507.1 mouse_genomes_project 1 133888090 133890886 - Ipo9 protein_coding retained_intron MGP_AJ_T0022274.1 MGP_AJ_G0016507.1 mouse_genomes_project 1 133888572 133891037 - Ipo9 protein_coding retained_intron MGP_AJ_T0022275.1 MGP_AJ_G0016507.1 mouse_genomes_project 1 133888677 133889851 - Ipo9 protein_coding retained_intron MGP_AJ_T0022276.1 MGP_AJ_G0016507.1 mouse_genomes_project 1 133890952 133892130 - Ipo9 protein_coding retained_intron MGP_AJ_T0022277.1 MGP_AJ_G0016507.1 mouse_genomes_project 1 133891773 133905712 - Ipo9 protein_coding processed_transcript MGP_AJ_T0022278.1 MGP_AJ_G0016507.1 mouse_genomes_project 1 133896446 133905803 - Ipo9 protein_coding retained_intron MGP_AJ_T0022279.1 MGP_AJ_G0016507.1 mouse_genomes_project 1 133904688 133934689 - MGP_AJ_P0022279 Ipo9 protein_coding nonsense_mediated_decay MGP_AJ_T0022280.1 MGP_AJ_G0016507.1 mouse_genomes_project 1 133908362 133909482 - Ipo9 protein_coding retained_intron MGP_AJ_T0022281.1 MGP_AJ_G0016507.1 mouse_genomes_project 1 133908812 133923331 - Ipo9 protein_coding retained_intron MGP_AJ_T0022282.1 MGP_AJ_G0016507.1 mouse_genomes_project 1 133910198 133934675 - MGP_AJ_P0022282 Ipo9 protein_coding nonsense_mediated_decay MGP_AJ_T0102150.1 MGP_AJ_G0039893.1 mouse_genomes_project 1 56892658 56902348 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0012251.1 MGP_AJ_G0010346.1 mouse_genomes_project 1 137190413 137190735 - processed_pseudogene processed_pseudogene MGP_AJ_T0102199.1 MGP_AJ_G0039942.1 mouse_genomes_project 1 172834779 172835249 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0005810.1 MGP_AJ_G0004871.1 mouse_genomes_project 1 78401364 78432700 + 1700016L21Rik lincRNA lincRNA MGP_AJ_T0005811.1 MGP_AJ_G0004871.1 mouse_genomes_project 1 78401372 78436907 + 1700016L21Rik lincRNA lincRNA MGP_AJ_T0011878.1 MGP_AJ_G0009973.1 mouse_genomes_project 1 6848223 6849318 + processed_pseudogene processed_pseudogene MGP_AJ_T0020407.1 MGP_AJ_G0016114.1 mouse_genomes_project 1 70204798 70292707 + MGP_AJ_P0020407 Xrcc5 protein_coding protein_coding MGP_AJ_T0005979.1 MGP_AJ_G0005008.1 mouse_genomes_project 1 163573968 163578059 - 4930568G15Rik lincRNA lincRNA MGP_AJ_T0005980.1 MGP_AJ_G0005008.1 mouse_genomes_project 1 163576561 163601536 - 4930568G15Rik lincRNA lincRNA MGP_AJ_T0019404.1 MGP_AJ_G0015924.1 mouse_genomes_project 1 35238224 35251736 - MGP_AJ_P0019404 2010300C02Rik protein_coding protein_coding MGP_AJ_T0019405.1 MGP_AJ_G0015924.1 mouse_genomes_project 1 35238224 35347076 - MGP_AJ_P0019405 2010300C02Rik protein_coding protein_coding MGP_AJ_T0019406.1 MGP_AJ_G0015924.1 mouse_genomes_project 1 35264639 35346786 - MGP_AJ_P0019406 2010300C02Rik protein_coding protein_coding MGP_AJ_T0021201.1 MGP_AJ_G0016269.1 mouse_genomes_project 1 86873763 86904065 - MGP_AJ_P0021201 Arl4c protein_coding nonsense_mediated_decay MGP_AJ_T0021202.1 MGP_AJ_G0016269.1 mouse_genomes_project 1 86873765 86904065 - MGP_AJ_P0021202 Arl4c protein_coding protein_coding MGP_AJ_T0021203.1 MGP_AJ_G0016269.1 mouse_genomes_project 1 86900399 86904410 - MGP_AJ_P0021203 Arl4c protein_coding protein_coding MGP_AJ_T0000636.1 MGP_AJ_G0000576.1 mouse_genomes_project 1 133299828 133307438 - TEC TEC MGP_AJ_T0023819.1 MGP_AJ_G0016845.1 mouse_genomes_project 1 179041702 179070144 - MGP_AJ_P0023819 Coq8a protein_coding protein_coding MGP_AJ_T0023820.1 MGP_AJ_G0016845.1 mouse_genomes_project 1 179041702 179072677 - MGP_AJ_P0023820 Coq8a protein_coding protein_coding MGP_AJ_T0023821.1 MGP_AJ_G0016845.1 mouse_genomes_project 1 179043483 179072595 - MGP_AJ_P0023821 Coq8a protein_coding protein_coding MGP_AJ_T0023822.1 MGP_AJ_G0016845.1 mouse_genomes_project 1 179043615 179055081 - MGP_AJ_P0023822 Coq8a protein_coding protein_coding MGP_AJ_T0023823.1 MGP_AJ_G0016845.1 mouse_genomes_project 1 179043855 179072638 - MGP_AJ_P0023823 Coq8a protein_coding nonsense_mediated_decay MGP_AJ_T0023824.1 MGP_AJ_G0016845.1 mouse_genomes_project 1 179046588 179072618 - MGP_AJ_P0023824 Coq8a protein_coding protein_coding MGP_AJ_T0023825.1 MGP_AJ_G0016845.1 mouse_genomes_project 1 179046595 179058552 - MGP_AJ_P0023825 Coq8a protein_coding nonsense_mediated_decay MGP_AJ_T0023826.1 MGP_AJ_G0016845.1 mouse_genomes_project 1 179047670 179055369 - Coq8a protein_coding retained_intron MGP_AJ_T0023827.1 MGP_AJ_G0016845.1 mouse_genomes_project 1 179055453 179072618 - MGP_AJ_P0023827 Coq8a protein_coding protein_coding MGP_AJ_T0023828.1 MGP_AJ_G0016845.1 mouse_genomes_project 1 179055518 179070142 - MGP_AJ_P0023828 Coq8a protein_coding protein_coding MGP_AJ_T0023829.1 MGP_AJ_G0016845.1 mouse_genomes_project 1 179055555 179072732 - MGP_AJ_P0023829 Coq8a protein_coding protein_coding MGP_AJ_T0023830.1 MGP_AJ_G0016845.1 mouse_genomes_project 1 179055582 179059255 - MGP_AJ_P0023830 Coq8a protein_coding protein_coding MGP_AJ_T0023831.1 MGP_AJ_G0016845.1 mouse_genomes_project 1 179055588 179072629 - MGP_AJ_P0023831 Coq8a protein_coding nonsense_mediated_decay MGP_AJ_T0023832.1 MGP_AJ_G0016845.1 mouse_genomes_project 1 179055591 179070321 - MGP_AJ_P0023832 Coq8a protein_coding protein_coding MGP_AJ_T0023833.1 MGP_AJ_G0016845.1 mouse_genomes_project 1 179055642 179072629 - MGP_AJ_P0023833 Coq8a protein_coding nonsense_mediated_decay MGP_AJ_T0023834.1 MGP_AJ_G0016845.1 mouse_genomes_project 1 179055694 179076163 - MGP_AJ_P0023834 Coq8a protein_coding protein_coding MGP_AJ_T0023835.1 MGP_AJ_G0016845.1 mouse_genomes_project 1 179058627 179072559 - MGP_AJ_P0023835 Coq8a protein_coding protein_coding MGP_AJ_T0011935.1 MGP_AJ_G0010030.1 mouse_genomes_project 1 26256499 26258984 - processed_pseudogene processed_pseudogene MGP_AJ_T0012379.1 MGP_AJ_G0010474.1 mouse_genomes_project 1 192740652 192741580 + processed_pseudogene processed_pseudogene MGP_AJ_T0000363.1 MGP_AJ_G0000307.1 mouse_genomes_project 1 5917244 5918404 - TEC TEC MGP_AJ_T0020906.1 MGP_AJ_G0016205.1 mouse_genomes_project 1 81033712 81034719 + MGP_AJ_P0020906 Krtap28-13 protein_coding protein_coding MGP_AJ_T0012085.1 MGP_AJ_G0010180.1 mouse_genomes_project 1 63958666 63959412 - processed_pseudogene processed_pseudogene MGP_AJ_T0005911.1 MGP_AJ_G0004956.1 mouse_genomes_project 1 134112127 134193702 - Gm38399 lincRNA lincRNA MGP_AJ_T0022208.1 MGP_AJ_G0016492.1 mouse_genomes_project 1 132957348 132972623 + MGP_AJ_P0022208 Rabif protein_coding protein_coding MGP_AJ_T0011891.1 MGP_AJ_G0009986.1 mouse_genomes_project 1 11107545 11108561 - processed_pseudogene processed_pseudogene MGP_AJ_T0023836.1 MGP_AJ_G0016846.1 mouse_genomes_project 1 179104167 179107230 - Psen2 protein_coding processed_transcript MGP_AJ_T0023837.1 MGP_AJ_G0016846.1 mouse_genomes_project 1 179104167 179130502 - MGP_AJ_P0023837 Psen2 protein_coding protein_coding MGP_AJ_T0023838.1 MGP_AJ_G0016846.1 mouse_genomes_project 1 179104167 179127359 - MGP_AJ_P0023838 Psen2 protein_coding protein_coding MGP_AJ_T0023839.1 MGP_AJ_G0016846.1 mouse_genomes_project 1 179104169 179106733 - Psen2 protein_coding retained_intron MGP_AJ_T0023840.1 MGP_AJ_G0016846.1 mouse_genomes_project 1 179104169 179120123 - MGP_AJ_P0023840 Psen2 protein_coding protein_coding MGP_AJ_T0023841.1 MGP_AJ_G0016846.1 mouse_genomes_project 1 179104552 179107227 - Psen2 protein_coding processed_transcript MGP_AJ_T0023842.1 MGP_AJ_G0016846.1 mouse_genomes_project 1 179104606 179122332 - MGP_AJ_P0023842 Psen2 protein_coding protein_coding MGP_AJ_T0023843.1 MGP_AJ_G0016846.1 mouse_genomes_project 1 179104609 179119930 - MGP_AJ_P0023843 Psen2 protein_coding protein_coding MGP_AJ_T0023844.1 MGP_AJ_G0016846.1 mouse_genomes_project 1 179104631 179107190 - Psen2 protein_coding processed_transcript MGP_AJ_T0023845.1 MGP_AJ_G0016846.1 mouse_genomes_project 1 179109696 179130446 - Psen2 protein_coding retained_intron MGP_AJ_T0023846.1 MGP_AJ_G0016846.1 mouse_genomes_project 1 179112346 179116218 - Psen2 protein_coding retained_intron MGP_AJ_T0023847.1 MGP_AJ_G0016846.1 mouse_genomes_project 1 179119810 179137647 - MGP_AJ_P0023847 Psen2 protein_coding protein_coding MGP_AJ_T0005845.1 MGP_AJ_G0004903.1 mouse_genomes_project 1 91338263 91339435 - Gm28086 lincRNA lincRNA MGP_AJ_T0000553.1 MGP_AJ_G0000494.1 mouse_genomes_project 1 85069458 85072386 + TEC TEC MGP_AJ_T0000721.1 MGP_AJ_G0000660.1 mouse_genomes_project 1 160982144 160984408 + TEC TEC MGP_AJ_T0012208.1 MGP_AJ_G0010303.1 mouse_genomes_project 1 117527487 117528467 + processed_pseudogene processed_pseudogene MGP_AJ_T0021428.1 MGP_AJ_G0016320.1 mouse_genomes_project 1 91526703 91535340 - Pask protein_coding retained_intron MGP_AJ_T0021429.1 MGP_AJ_G0016320.1 mouse_genomes_project 1 91526711 91560719 - MGP_AJ_P0021429 Pask protein_coding protein_coding MGP_AJ_T0021430.1 MGP_AJ_G0016320.1 mouse_genomes_project 1 91527771 91531083 - Pask protein_coding retained_intron MGP_AJ_T0021431.1 MGP_AJ_G0016320.1 mouse_genomes_project 1 91528018 91529278 - Pask protein_coding retained_intron MGP_AJ_T0021432.1 MGP_AJ_G0016320.1 mouse_genomes_project 1 91535754 91561395 - Pask protein_coding retained_intron MGP_AJ_T0021433.1 MGP_AJ_G0016320.1 mouse_genomes_project 1 91555382 91561412 - MGP_AJ_P0021433 Pask protein_coding protein_coding MGP_AJ_T0023230.1 MGP_AJ_G0016687.1 mouse_genomes_project 1 164998450 165013195 - MGP_AJ_P0023230 Gm4846 protein_coding protein_coding MGP_AJ_T0019098.1 MGP_AJ_G0015868.1 mouse_genomes_project 1 21393939 21403642 - MGP_AJ_P0019098 Sdhaf4 protein_coding protein_coding MGP_AJ_T0019099.1 MGP_AJ_G0015868.1 mouse_genomes_project 1 21400946 21403616 - Sdhaf4 protein_coding processed_transcript MGP_AJ_T0005653.1 MGP_AJ_G0004756.1 mouse_genomes_project 1 13985114 13989850 + D030040B21Rik lincRNA lincRNA MGP_AJ_T0016986.1 MGP_AJ_G0015069.1 mouse_genomes_project 1 41793138 41811194 - Gm29247 processed_transcript processed_transcript MGP_AJ_T0016987.1 MGP_AJ_G0015069.1 mouse_genomes_project 1 41793239 41811938 - Gm29247 processed_transcript processed_transcript MGP_AJ_T0102165.1 MGP_AJ_G0039908.1 mouse_genomes_project 1 86304226 86305009 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0002790.1 MGP_AJ_G0002647.1 mouse_genomes_project 1 37757653 37767288 - Gm16894 antisense antisense MGP_AJ_T0000749.1 MGP_AJ_G0000688.1 mouse_genomes_project 1 175740376 175743475 + TEC TEC MGP_AJ_T0022724.1 MGP_AJ_G0016594.1 mouse_genomes_project 1 153753284 153901403 - MGP_AJ_P0022724 Xpr1 protein_coding protein_coding MGP_AJ_T0022725.1 MGP_AJ_G0016594.1 mouse_genomes_project 1 153756565 153901481 - MGP_AJ_P0022725 Xpr1 protein_coding protein_coding MGP_AJ_T0022726.1 MGP_AJ_G0016594.1 mouse_genomes_project 1 153758593 153901308 - MGP_AJ_P0022726 Xpr1 protein_coding unknown_likely_coding MGP_AJ_T0022727.1 MGP_AJ_G0016594.1 mouse_genomes_project 1 153759766 153792305 - Xpr1 protein_coding retained_intron MGP_AJ_T0022728.1 MGP_AJ_G0016594.1 mouse_genomes_project 1 153760251 153901489 - MGP_AJ_P0022728 Xpr1 protein_coding protein_coding MGP_AJ_T0022729.1 MGP_AJ_G0016594.1 mouse_genomes_project 1 153766879 153769619 - Xpr1 protein_coding retained_intron MGP_AJ_T0022730.1 MGP_AJ_G0016594.1 mouse_genomes_project 1 153805155 153901469 - Xpr1 protein_coding retained_intron MGP_AJ_T0022731.1 MGP_AJ_G0016594.1 mouse_genomes_project 1 153865504 153868575 - Xpr1 protein_coding processed_transcript MGP_AJ_T0019419.1 MGP_AJ_G0015927.1 mouse_genomes_project 1 35516615 35532208 - MGP_AJ_P0019419 Mitd1 protein_coding protein_coding MGP_AJ_T0019420.1 MGP_AJ_G0015927.1 mouse_genomes_project 1 35520701 35532212 - MGP_AJ_P0019420 Mitd1 protein_coding protein_coding MGP_AJ_T0019421.1 MGP_AJ_G0015927.1 mouse_genomes_project 1 35520703 35521932 - Mitd1 protein_coding processed_transcript MGP_AJ_T0019422.1 MGP_AJ_G0015927.1 mouse_genomes_project 1 35520801 35523676 - Mitd1 protein_coding processed_transcript MGP_AJ_T0019423.1 MGP_AJ_G0015927.1 mouse_genomes_project 1 35523736 35532077 - Mitd1 protein_coding retained_intron MGP_AJ_T0023058.1 MGP_AJ_G0016648.1 mouse_genomes_project 1 161424587 161446441 - MGP_AJ_P0023058 Fmo6 protein_coding nonsense_mediated_decay MGP_AJ_T0023059.1 MGP_AJ_G0016648.1 mouse_genomes_project 1 161424759 161446144 - MGP_AJ_P0023059 Fmo6 protein_coding protein_coding MGP_AJ_T0012222.1 MGP_AJ_G0010317.1 mouse_genomes_project 1 121169007 121169384 + processed_pseudogene processed_pseudogene MGP_AJ_T0000512.1 MGP_AJ_G0000453.1 mouse_genomes_project 1 68456818 68462655 - TEC TEC MGP_AJ_T0000542.1 MGP_AJ_G0000483.1 mouse_genomes_project 1 82761659 82763693 - TEC TEC MGP_AJ_T0023341.1 MGP_AJ_G0016721.1 mouse_genomes_project 1 169694228 169707622 + MGP_AJ_P0023341 Cfap126 protein_coding protein_coding MGP_AJ_T0023342.1 MGP_AJ_G0016721.1 mouse_genomes_project 1 169694299 169707572 + MGP_AJ_P0023342 Cfap126 protein_coding protein_coding MGP_AJ_T0023343.1 MGP_AJ_G0016721.1 mouse_genomes_project 1 169702417 169707760 + MGP_AJ_P0023343 Cfap126 protein_coding protein_coding MGP_AJ_T0023344.1 MGP_AJ_G0016721.1 mouse_genomes_project 1 169702420 169703899 + Cfap126 protein_coding processed_transcript MGP_AJ_T0023345.1 MGP_AJ_G0016721.1 mouse_genomes_project 1 169703421 169706833 + MGP_AJ_P0023345 Cfap126 protein_coding protein_coding MGP_AJ_T0023346.1 MGP_AJ_G0016721.1 mouse_genomes_project 1 169703892 169707735 + MGP_AJ_P0023346 Cfap126 protein_coding nonsense_mediated_decay MGP_AJ_T0023347.1 MGP_AJ_G0016721.1 mouse_genomes_project 1 169703916 169706877 + MGP_AJ_P0023347 Cfap126 protein_coding nonsense_mediated_decay MGP_AJ_T0023348.1 MGP_AJ_G0016721.1 mouse_genomes_project 1 169705839 169707452 + MGP_AJ_P0023348 Cfap126 protein_coding protein_coding MGP_AJ_T0000716.1 MGP_AJ_G0000655.1 mouse_genomes_project 1 159397975 159401547 + TEC TEC MGP_AJ_T0019587.1 MGP_AJ_G0015965.1 mouse_genomes_project 1 41431699 41443641 + MGP_AJ_P0019587 1500015O10Rik protein_coding protein_coding MGP_AJ_T0020985.1 MGP_AJ_G0016220.1 mouse_genomes_project 1 84021595 84030467 + Spata3 protein_coding processed_transcript MGP_AJ_T0020986.1 MGP_AJ_G0016220.1 mouse_genomes_project 1 84023484 84035021 + Spata3 protein_coding processed_transcript MGP_AJ_T0020987.1 MGP_AJ_G0016220.1 mouse_genomes_project 1 84027737 84035731 + MGP_AJ_P0020987 Spata3 protein_coding protein_coding MGP_AJ_T0020988.1 MGP_AJ_G0016220.1 mouse_genomes_project 1 84027738 84030464 + MGP_AJ_P0020988 Spata3 protein_coding protein_coding MGP_AJ_T0020989.1 MGP_AJ_G0016220.1 mouse_genomes_project 1 84027741 84030466 + MGP_AJ_P0020989 Spata3 protein_coding protein_coding MGP_AJ_T0020990.1 MGP_AJ_G0016220.1 mouse_genomes_project 1 84027741 84035731 + MGP_AJ_P0020990 Spata3 protein_coding protein_coding MGP_AJ_T0020991.1 MGP_AJ_G0016220.1 mouse_genomes_project 1 84027741 84032971 + MGP_AJ_P0020991 Spata3 protein_coding protein_coding MGP_AJ_T0020992.1 MGP_AJ_G0016220.1 mouse_genomes_project 1 84027748 84035694 + MGP_AJ_P0020992 Spata3 protein_coding protein_coding MGP_AJ_T0020993.1 MGP_AJ_G0016220.1 mouse_genomes_project 1 84027755 84035035 + MGP_AJ_P0020993 Spata3 protein_coding protein_coding MGP_AJ_T0020994.1 MGP_AJ_G0016220.1 mouse_genomes_project 1 84027756 84030467 + MGP_AJ_P0020994 Spata3 protein_coding protein_coding MGP_AJ_T0020995.1 MGP_AJ_G0016220.1 mouse_genomes_project 1 84027900 84035037 + MGP_AJ_P0020995 Spata3 protein_coding protein_coding MGP_AJ_T0009530.1 MGP_AJ_G0007652.1 mouse_genomes_project 1 129940591 129940755 - Gm24273 miRNA miRNA MGP_AJ_T0019308.1 MGP_AJ_G0015908.1 mouse_genomes_project 1 34069829 34107095 + MGP_AJ_P0019308 Cnnm4 protein_coding protein_coding MGP_AJ_T0019309.1 MGP_AJ_G0015908.1 mouse_genomes_project 1 34070205 34071577 + Cnnm4 protein_coding retained_intron MGP_AJ_T0021074.1 MGP_AJ_G0016242.1 mouse_genomes_project 1 85242941 85255657 + MGP_AJ_P0021074 Eif4e2 protein_coding protein_coding MGP_AJ_T0021075.1 MGP_AJ_G0016242.1 mouse_genomes_project 1 85242941 85269482 + MGP_AJ_P0021075 Eif4e2 protein_coding protein_coding MGP_AJ_T0021076.1 MGP_AJ_G0016242.1 mouse_genomes_project 1 85242941 85257906 + MGP_AJ_P0021076 Eif4e2 protein_coding protein_coding MGP_AJ_T0021077.1 MGP_AJ_G0016242.1 mouse_genomes_project 1 85242941 85269482 + MGP_AJ_P0021077 Eif4e2 protein_coding protein_coding MGP_AJ_T0021078.1 MGP_AJ_G0016242.1 mouse_genomes_project 1 85242941 85263757 + MGP_AJ_P0021078 Eif4e2 protein_coding protein_coding MGP_AJ_T0021079.1 MGP_AJ_G0016242.1 mouse_genomes_project 1 85242966 85255650 + MGP_AJ_P0021079 Eif4e2 protein_coding protein_coding MGP_AJ_T0021080.1 MGP_AJ_G0016242.1 mouse_genomes_project 1 85243006 85254923 + MGP_AJ_P0021080 Eif4e2 protein_coding protein_coding MGP_AJ_T0021081.1 MGP_AJ_G0016242.1 mouse_genomes_project 1 85243313 85257114 + MGP_AJ_P0021081 Eif4e2 protein_coding protein_coding MGP_AJ_T0002940.1 MGP_AJ_G0002760.1 mouse_genomes_project 1 164378996 164379886 - Gm37469 antisense antisense MGP_AJ_T0023091.1 MGP_AJ_G0016659.1 mouse_genomes_project 1 162572167 162594367 + MGP_AJ_P0023091 Sell protein_coding protein_coding MGP_AJ_T0023092.1 MGP_AJ_G0016659.1 mouse_genomes_project 1 162572270 162590858 + MGP_AJ_P0023092 Sell protein_coding protein_coding MGP_AJ_T0023093.1 MGP_AJ_G0016659.1 mouse_genomes_project 1 162572374 162589878 + MGP_AJ_P0023093 Sell protein_coding protein_coding MGP_AJ_T0023094.1 MGP_AJ_G0016659.1 mouse_genomes_project 1 162579147 162590182 + MGP_AJ_P0023094 Sell protein_coding protein_coding MGP_AJ_T0005651.1 MGP_AJ_G0004754.1 mouse_genomes_project 1 10000390 10001243 - Gm29663 lincRNA lincRNA MGP_AJ_T0000624.1 MGP_AJ_G0000565.1 mouse_genomes_project 1 129787142 129788524 - TEC TEC MGP_AJ_T0021873.1 MGP_AJ_G0016414.1 mouse_genomes_project 1 126926925 126931008 - MGP_AJ_P0021873 Cxcr4 protein_coding protein_coding MGP_AJ_T0021874.1 MGP_AJ_G0016414.1 mouse_genomes_project 1 126927817 126931011 - MGP_AJ_P0021874 Cxcr4 protein_coding protein_coding MGP_AJ_T0022459.1 MGP_AJ_G0016544.1 mouse_genomes_project 1 142081533 142095471 + MGP_AJ_P0022459 B3galt2 protein_coding protein_coding MGP_AJ_T0011952.1 MGP_AJ_G0010047.1 mouse_genomes_project 1 30896215 30897128 - processed_pseudogene processed_pseudogene MGP_AJ_T0024212.1 MGP_AJ_G0016925.1 mouse_genomes_project 1 190485265 190532104 + MGP_AJ_P0024212 Ints7 protein_coding protein_coding MGP_AJ_T0024213.1 MGP_AJ_G0016925.1 mouse_genomes_project 1 190485355 190518128 + Ints7 protein_coding retained_intron MGP_AJ_T0024214.1 MGP_AJ_G0016925.1 mouse_genomes_project 1 190485370 190530054 + MGP_AJ_P0024214 Ints7 protein_coding nonsense_mediated_decay MGP_AJ_T0024215.1 MGP_AJ_G0016925.1 mouse_genomes_project 1 190485390 190516746 + MGP_AJ_P0024215 Ints7 protein_coding nonsense_mediated_decay MGP_AJ_T0024216.1 MGP_AJ_G0016925.1 mouse_genomes_project 1 190485390 190531162 + MGP_AJ_P0024216 Ints7 protein_coding nonsense_mediated_decay MGP_AJ_T0024217.1 MGP_AJ_G0016925.1 mouse_genomes_project 1 190485404 190493177 + Ints7 protein_coding retained_intron MGP_AJ_T0012302.1 MGP_AJ_G0010397.1 mouse_genomes_project 1 156099831 156100029 + processed_pseudogene processed_pseudogene MGP_AJ_T0012309.1 MGP_AJ_G0010404.1 mouse_genomes_project 1 160248496 160250096 + processed_pseudogene processed_pseudogene MGP_AJ_T0023170.1 MGP_AJ_G0016677.1 mouse_genomes_project 1 164155268 164217737 - MGP_AJ_P0023170 Rcsd1 protein_coding protein_coding MGP_AJ_T0023171.1 MGP_AJ_G0016677.1 mouse_genomes_project 1 164157699 164217699 - MGP_AJ_P0023171 Rcsd1 protein_coding protein_coding MGP_AJ_T0023172.1 MGP_AJ_G0016677.1 mouse_genomes_project 1 164173600 164219044 - MGP_AJ_P0023172 Rcsd1 protein_coding protein_coding MGP_AJ_T0023173.1 MGP_AJ_G0016677.1 mouse_genomes_project 1 164214172 164219377 - Rcsd1 protein_coding retained_intron MGP_AJ_T0023174.1 MGP_AJ_G0016677.1 mouse_genomes_project 1 164218089 164219408 - Rcsd1 protein_coding processed_transcript MGP_AJ_T0012230.1 MGP_AJ_G0010325.1 mouse_genomes_project 1 124031060 124031689 - processed_pseudogene processed_pseudogene MGP_AJ_T0005939.1 MGP_AJ_G0004978.1 mouse_genomes_project 1 149545283 149549607 + C730036E19Rik lincRNA lincRNA MGP_AJ_T0022035.1 MGP_AJ_G0016454.1 mouse_genomes_project 1 130799995 130834726 - MGP_AJ_P0022035 Tmcc2 protein_coding protein_coding MGP_AJ_T0022036.1 MGP_AJ_G0016454.1 mouse_genomes_project 1 130799996 130811565 - Tmcc2 protein_coding retained_intron MGP_AJ_T0022037.1 MGP_AJ_G0016454.1 mouse_genomes_project 1 130799996 130811566 - MGP_AJ_P0022037 Tmcc2 protein_coding protein_coding MGP_AJ_T0022038.1 MGP_AJ_G0016454.1 mouse_genomes_project 1 130804279 130810751 - Tmcc2 protein_coding processed_transcript MGP_AJ_T0022039.1 MGP_AJ_G0016454.1 mouse_genomes_project 1 130804706 130808629 - Tmcc2 protein_coding processed_transcript MGP_AJ_T0019116.1 MGP_AJ_G0015872.1 mouse_genomes_project 1 22078802 22107316 + MGP_AJ_P0019116 Lmbrd1 protein_coding protein_coding MGP_AJ_T0019117.1 MGP_AJ_G0015872.1 mouse_genomes_project 1 22078881 22127262 + MGP_AJ_P0019117 Lmbrd1 protein_coding protein_coding MGP_AJ_T0019118.1 MGP_AJ_G0015872.1 mouse_genomes_project 1 22078899 22161660 + MGP_AJ_P0019118 Lmbrd1 protein_coding protein_coding MGP_AJ_T0019119.1 MGP_AJ_G0015872.1 mouse_genomes_project 1 22124009 22140234 + Lmbrd1 protein_coding retained_intron MGP_AJ_T0019120.1 MGP_AJ_G0015872.1 mouse_genomes_project 1 22140158 22157759 + MGP_AJ_P0019120 Lmbrd1 protein_coding protein_coding MGP_AJ_T0000539.1 MGP_AJ_G0000480.1 mouse_genomes_project 1 82098917 82100624 - TEC TEC MGP_AJ_T0000518.1 MGP_AJ_G0000459.1 mouse_genomes_project 1 72938142 72939702 + TEC TEC MGP_AJ_T0005917.1 MGP_AJ_G0004962.1 mouse_genomes_project 1 135133228 135135781 - Platr23 lincRNA lincRNA MGP_AJ_T0000419.1 MGP_AJ_G0000361.1 mouse_genomes_project 1 23225627 23225957 - TEC TEC MGP_AJ_T0022295.1 MGP_AJ_G0016511.1 mouse_genomes_project 1 134283697 134289301 + Tnni1 protein_coding processed_transcript MGP_AJ_T0022296.1 MGP_AJ_G0016511.1 mouse_genomes_project 1 134287264 134309963 + MGP_AJ_P0022296 Tnni1 protein_coding protein_coding MGP_AJ_T0022297.1 MGP_AJ_G0016511.1 mouse_genomes_project 1 134303788 134315350 + MGP_AJ_P0022297 Tnni1 protein_coding protein_coding MGP_AJ_T0022298.1 MGP_AJ_G0016511.1 mouse_genomes_project 1 134303807 134314995 + Tnni1 protein_coding processed_transcript MGP_AJ_T0022299.1 MGP_AJ_G0016511.1 mouse_genomes_project 1 134303807 134315350 + MGP_AJ_P0022299 Tnni1 protein_coding protein_coding MGP_AJ_T0022300.1 MGP_AJ_G0016511.1 mouse_genomes_project 1 134303897 134315061 + MGP_AJ_P0022300 Tnni1 protein_coding protein_coding MGP_AJ_T0022301.1 MGP_AJ_G0016511.1 mouse_genomes_project 1 134303905 134314102 + MGP_AJ_P0022301 Tnni1 protein_coding protein_coding MGP_AJ_T0022302.1 MGP_AJ_G0016511.1 mouse_genomes_project 1 134304219 134315350 + MGP_AJ_P0022302 Tnni1 protein_coding protein_coding MGP_AJ_T0022303.1 MGP_AJ_G0016511.1 mouse_genomes_project 1 134309396 134314276 + MGP_AJ_P0022303 Tnni1 protein_coding protein_coding MGP_AJ_T0002800.1 MGP_AJ_G0002655.1 mouse_genomes_project 1 48924865 48927744 - Gm28319 antisense antisense MGP_AJ_T0022946.1 MGP_AJ_G0016629.1 mouse_genomes_project 1 159555591 159571578 + MGP_AJ_P0022946 Cenpl protein_coding protein_coding MGP_AJ_T0022947.1 MGP_AJ_G0016629.1 mouse_genomes_project 1 159555645 159571196 + MGP_AJ_P0022947 Cenpl protein_coding protein_coding MGP_AJ_T0022948.1 MGP_AJ_G0016629.1 mouse_genomes_project 1 159555645 159571196 + MGP_AJ_P0022948 Cenpl protein_coding protein_coding MGP_AJ_T0022949.1 MGP_AJ_G0016629.1 mouse_genomes_project 1 159555770 159571182 + MGP_AJ_P0022949 Cenpl protein_coding nonsense_mediated_decay MGP_AJ_T0022950.1 MGP_AJ_G0016629.1 mouse_genomes_project 1 159555828 159571182 + MGP_AJ_P0022950 Cenpl protein_coding nonsense_mediated_decay MGP_AJ_T0022951.1 MGP_AJ_G0016629.1 mouse_genomes_project 1 159555844 159571582 + MGP_AJ_P0022951 Cenpl protein_coding nonsense_mediated_decay MGP_AJ_T0022952.1 MGP_AJ_G0016629.1 mouse_genomes_project 1 159555863 159568338 + MGP_AJ_P0022952 Cenpl protein_coding nonsense_mediated_decay MGP_AJ_T0022953.1 MGP_AJ_G0016629.1 mouse_genomes_project 1 159555894 159571196 + MGP_AJ_P0022953 Cenpl protein_coding nonsense_mediated_decay MGP_AJ_T0022954.1 MGP_AJ_G0016629.1 mouse_genomes_project 1 159557283 159557857 + Cenpl protein_coding processed_transcript MGP_AJ_T0022955.1 MGP_AJ_G0016629.1 mouse_genomes_project 1 159560895 159568249 + Cenpl protein_coding processed_transcript MGP_AJ_T0011962.1 MGP_AJ_G0010057.1 mouse_genomes_project 1 32218047 32218282 - processed_pseudogene processed_pseudogene MGP_AJ_T0011875.1 MGP_AJ_G0009970.1 mouse_genomes_project 1 6748616 6749252 - processed_pseudogene processed_pseudogene MGP_AJ_T0006043.1 MGP_AJ_G0005058.1 mouse_genomes_project 1 185398887 185445991 - A730004F24Rik lincRNA lincRNA MGP_AJ_T0006044.1 MGP_AJ_G0005058.1 mouse_genomes_project 1 185398931 185446200 - A730004F24Rik lincRNA lincRNA MGP_AJ_T0021356.1 MGP_AJ_G0016304.1 mouse_genomes_project 1 90836083 90837250 + MGP_AJ_P0021356 Olfr12 protein_coding protein_coding MGP_AJ_T0099173.1 MGP_AJ_G0037139.1 mouse_genomes_project 1 64742789 64742849 + Gm27934 snRNA snRNA MGP_AJ_T0023152.1 MGP_AJ_G0016675.1 mouse_genomes_project 1 163995615 164084030 + MGP_AJ_P0023152 Adcy10 protein_coding nonsense_mediated_decay MGP_AJ_T0023153.1 MGP_AJ_G0016675.1 mouse_genomes_project 1 163995615 164083425 + MGP_AJ_P0023153 Adcy10 protein_coding protein_coding MGP_AJ_T0023154.1 MGP_AJ_G0016675.1 mouse_genomes_project 1 163995615 164084400 + MGP_AJ_P0023154 Adcy10 protein_coding protein_coding MGP_AJ_T0023155.1 MGP_AJ_G0016675.1 mouse_genomes_project 1 163995621 164083424 + MGP_AJ_P0023155 Adcy10 protein_coding protein_coding MGP_AJ_T0023156.1 MGP_AJ_G0016675.1 mouse_genomes_project 1 163995625 163999993 + Adcy10 protein_coding processed_transcript MGP_AJ_T0023157.1 MGP_AJ_G0016675.1 mouse_genomes_project 1 163995643 164083422 + MGP_AJ_P0023157 Adcy10 protein_coding nonsense_mediated_decay MGP_AJ_T0023158.1 MGP_AJ_G0016675.1 mouse_genomes_project 1 164014383 164075365 + MGP_AJ_P0023158 Adcy10 protein_coding protein_coding MGP_AJ_T0023159.1 MGP_AJ_G0016675.1 mouse_genomes_project 1 164021301 164050396 + Adcy10 protein_coding retained_intron MGP_AJ_T0023160.1 MGP_AJ_G0016675.1 mouse_genomes_project 1 164031078 164032890 + Adcy10 protein_coding retained_intron MGP_AJ_T0023161.1 MGP_AJ_G0016675.1 mouse_genomes_project 1 164050219 164058503 + Adcy10 protein_coding processed_transcript MGP_AJ_T0017083.1 MGP_AJ_G0015100.1 mouse_genomes_project 1 171123925 171136131 - 4933439K11Rik processed_transcript lincRNA MGP_AJ_T0017084.1 MGP_AJ_G0015100.1 mouse_genomes_project 1 171127420 171136268 - 4933439K11Rik processed_transcript lincRNA MGP_AJ_T0017085.1 MGP_AJ_G0015100.1 mouse_genomes_project 1 171134711 171143569 - 4933439K11Rik processed_transcript antisense MGP_AJ_T0000493.1 MGP_AJ_G0000434.1 mouse_genomes_project 1 60165033 60167550 + TEC TEC MGP_AJ_T0023365.1 MGP_AJ_G0016726.1 mouse_genomes_project 1 169797487 169803984 - MGP_AJ_P0023365 Tomm40l protein_coding protein_coding MGP_AJ_T0023366.1 MGP_AJ_G0016726.1 mouse_genomes_project 1 169799279 169803918 - MGP_AJ_P0023366 Tomm40l protein_coding protein_coding MGP_AJ_T0023367.1 MGP_AJ_G0016726.1 mouse_genomes_project 1 169799279 169803654 - MGP_AJ_P0023367 Tomm40l protein_coding protein_coding MGP_AJ_T0023368.1 MGP_AJ_G0016726.1 mouse_genomes_project 1 169799840 169803921 - MGP_AJ_P0023368 Tomm40l protein_coding nonsense_mediated_decay MGP_AJ_T0023369.1 MGP_AJ_G0016726.1 mouse_genomes_project 1 169802296 169803930 - MGP_AJ_P0023369 Tomm40l protein_coding protein_coding MGP_AJ_T0023370.1 MGP_AJ_G0016726.1 mouse_genomes_project 1 169802367 169803914 - MGP_AJ_P0023370 Tomm40l protein_coding protein_coding MGP_AJ_T0023371.1 MGP_AJ_G0016726.1 mouse_genomes_project 1 169802556 169803902 - Tomm40l protein_coding processed_transcript MGP_AJ_T0023372.1 MGP_AJ_G0016726.1 mouse_genomes_project 1 169802649 169803966 - Tomm40l protein_coding retained_intron MGP_AJ_T0000566.1 MGP_AJ_G0000507.1 mouse_genomes_project 1 91752229 91754616 + TEC TEC MGP_AJ_T0021225.1 MGP_AJ_G0016276.1 mouse_genomes_project 1 88800958 88810607 + Cops8 protein_coding retained_intron MGP_AJ_T0021226.1 MGP_AJ_G0016276.1 mouse_genomes_project 1 88800960 88808949 + Cops8 protein_coding retained_intron MGP_AJ_T0021227.1 MGP_AJ_G0016276.1 mouse_genomes_project 1 88800981 88803141 + Cops8 protein_coding retained_intron MGP_AJ_T0021228.1 MGP_AJ_G0016276.1 mouse_genomes_project 1 88800981 88808520 + Cops8 protein_coding processed_transcript MGP_AJ_T0021229.1 MGP_AJ_G0016276.1 mouse_genomes_project 1 88801032 88810825 + MGP_AJ_P0021229 Cops8 protein_coding protein_coding MGP_AJ_T0021230.1 MGP_AJ_G0016276.1 mouse_genomes_project 1 88807136 88808811 + Cops8 protein_coding retained_intron MGP_AJ_T0021231.1 MGP_AJ_G0016276.1 mouse_genomes_project 1 88808828 88809876 + Cops8 protein_coding retained_intron MGP_AJ_T0012194.1 MGP_AJ_G0010289.1 mouse_genomes_project 1 110450594 110451259 + processed_pseudogene processed_pseudogene MGP_AJ_T0022827.1 MGP_AJ_G0016610.1 mouse_genomes_project 1 155313009 155333336 + MGP_AJ_P0022827 Angptl1 protein_coding protein_coding MGP_AJ_T0022828.1 MGP_AJ_G0016610.1 mouse_genomes_project 1 155313393 155320033 + MGP_AJ_P0022828 Angptl1 protein_coding protein_coding MGP_AJ_T0005719.1 MGP_AJ_G0004804.1 mouse_genomes_project 1 47005365 47090515 + C230029F24Rik lincRNA lincRNA MGP_AJ_T0005720.1 MGP_AJ_G0004804.1 mouse_genomes_project 1 47005365 47088309 + C230029F24Rik lincRNA lincRNA MGP_AJ_T0021172.1 MGP_AJ_G0016256.1 mouse_genomes_project 1 86144129 86334105 + MGP_AJ_P0021172 Ugt1a8 protein_coding protein_coding MGP_AJ_T0022307.1 MGP_AJ_G0016513.1 mouse_genomes_project 1 134340454 134356165 + MGP_AJ_P0022307 Tnnt2 protein_coding protein_coding MGP_AJ_T0022308.1 MGP_AJ_G0016513.1 mouse_genomes_project 1 134340486 134356165 + MGP_AJ_P0022308 Tnnt2 protein_coding protein_coding MGP_AJ_T0022309.1 MGP_AJ_G0016513.1 mouse_genomes_project 1 134340490 134343813 + Tnnt2 protein_coding retained_intron MGP_AJ_T0022310.1 MGP_AJ_G0016513.1 mouse_genomes_project 1 134340490 134348822 + Tnnt2 protein_coding retained_intron MGP_AJ_T0022311.1 MGP_AJ_G0016513.1 mouse_genomes_project 1 134340502 134352119 + MGP_AJ_P0022311 Tnnt2 protein_coding protein_coding MGP_AJ_T0022312.1 MGP_AJ_G0016513.1 mouse_genomes_project 1 134340510 134356165 + MGP_AJ_P0022312 Tnnt2 protein_coding protein_coding MGP_AJ_T0022313.1 MGP_AJ_G0016513.1 mouse_genomes_project 1 134340513 134356165 + MGP_AJ_P0022313 Tnnt2 protein_coding protein_coding MGP_AJ_T0022314.1 MGP_AJ_G0016513.1 mouse_genomes_project 1 134344792 134353529 + MGP_AJ_P0022314 Tnnt2 protein_coding protein_coding MGP_AJ_T0022315.1 MGP_AJ_G0016513.1 mouse_genomes_project 1 134344950 134356165 + MGP_AJ_P0022315 Tnnt2 protein_coding protein_coding MGP_AJ_T0022316.1 MGP_AJ_G0016513.1 mouse_genomes_project 1 134344968 134356165 + MGP_AJ_P0022316 Tnnt2 protein_coding protein_coding MGP_AJ_T0022317.1 MGP_AJ_G0016513.1 mouse_genomes_project 1 134344968 134356165 + MGP_AJ_P0022317 Tnnt2 protein_coding protein_coding MGP_AJ_T0022318.1 MGP_AJ_G0016513.1 mouse_genomes_project 1 134344968 134356165 + MGP_AJ_P0022318 Tnnt2 protein_coding protein_coding MGP_AJ_T0022319.1 MGP_AJ_G0016513.1 mouse_genomes_project 1 134344968 134356165 + MGP_AJ_P0022319 Tnnt2 protein_coding protein_coding MGP_AJ_T0022320.1 MGP_AJ_G0016513.1 mouse_genomes_project 1 134344968 134356165 + MGP_AJ_P0022320 Tnnt2 protein_coding protein_coding MGP_AJ_T0022321.1 MGP_AJ_G0016513.1 mouse_genomes_project 1 134353519 134353811 + Tnnt2 protein_coding retained_intron MGP_AJ_T0100470.1 MGP_AJ_G0038436.1 mouse_genomes_project 1 146674809 146674938 - Gm22966 snoRNA snoRNA MGP_AJ_T0022988.1 MGP_AJ_G0016637.1 mouse_genomes_project 1 160439995 160479022 - MGP_AJ_P0022988 4930558K02Rik protein_coding protein_coding MGP_AJ_T0022989.1 MGP_AJ_G0016637.1 mouse_genomes_project 1 160440000 160468540 - 4930558K02Rik protein_coding processed_transcript MGP_AJ_T0005814.1 MGP_AJ_G0004874.1 mouse_genomes_project 1 81631213 81881921 - 4933436I20Rik lincRNA lincRNA MGP_AJ_T0005815.1 MGP_AJ_G0004874.1 mouse_genomes_project 1 81809501 81881953 - 4933436I20Rik lincRNA lincRNA MGP_AJ_T0012239.1 MGP_AJ_G0010334.1 mouse_genomes_project 1 130074836 130075296 - processed_pseudogene processed_pseudogene MGP_AJ_T0022070.1 MGP_AJ_G0016460.1 mouse_genomes_project 1 131327124 131386850 + MGP_AJ_P0022070 Lrrn2 protein_coding protein_coding MGP_AJ_T0022071.1 MGP_AJ_G0016460.1 mouse_genomes_project 1 131327206 131383995 + Lrrn2 protein_coding processed_transcript MGP_AJ_T0020211.1 MGP_AJ_G0016075.1 mouse_genomes_project 1 61652134 61674724 + MGP_AJ_P0020211 Fastkd2 protein_coding protein_coding MGP_AJ_T0020212.1 MGP_AJ_G0016075.1 mouse_genomes_project 1 61652161 61657984 + Fastkd2 protein_coding retained_intron MGP_AJ_T0020213.1 MGP_AJ_G0016075.1 mouse_genomes_project 1 61652163 61672607 + Fastkd2 protein_coding retained_intron MGP_AJ_T0020214.1 MGP_AJ_G0016075.1 mouse_genomes_project 1 61657850 61668128 + Fastkd2 protein_coding processed_transcript MGP_AJ_T0020215.1 MGP_AJ_G0016075.1 mouse_genomes_project 1 61668091 61670346 + Fastkd2 protein_coding retained_intron MGP_AJ_T0020216.1 MGP_AJ_G0016075.1 mouse_genomes_project 1 61671290 61672534 + Fastkd2 protein_coding processed_transcript MGP_AJ_T0019526.1 MGP_AJ_G0015949.1 mouse_genomes_project 1 37907096 37998112 + MGP_AJ_P0019526 Il1r1 protein_coding protein_coding MGP_AJ_T0019527.1 MGP_AJ_G0015949.1 mouse_genomes_project 1 37948885 37959405 + Il1r1 protein_coding processed_transcript MGP_AJ_T0019528.1 MGP_AJ_G0015949.1 mouse_genomes_project 1 37958291 37997026 + MGP_AJ_P0019528 Il1r1 protein_coding unknown_likely_coding MGP_AJ_T0020520.1 MGP_AJ_G0016138.1 mouse_genomes_project 1 72542619 72566487 - MGP_AJ_P0020520 Zfp142 protein_coding protein_coding MGP_AJ_T0020521.1 MGP_AJ_G0016138.1 mouse_genomes_project 1 72543918 72566484 - MGP_AJ_P0020521 Zfp142 protein_coding protein_coding MGP_AJ_T0020522.1 MGP_AJ_G0016138.1 mouse_genomes_project 1 72543994 72566604 - MGP_AJ_P0020522 Zfp142 protein_coding protein_coding MGP_AJ_T0020523.1 MGP_AJ_G0016138.1 mouse_genomes_project 1 72544175 72566705 - MGP_AJ_P0020523 Zfp142 protein_coding nonsense_mediated_decay MGP_AJ_T0020524.1 MGP_AJ_G0016138.1 mouse_genomes_project 1 72544361 72564122 - MGP_AJ_P0020524 Zfp142 protein_coding nonsense_mediated_decay MGP_AJ_T0020525.1 MGP_AJ_G0016138.1 mouse_genomes_project 1 72560690 72566654 - Zfp142 protein_coding retained_intron MGP_AJ_T0020526.1 MGP_AJ_G0016138.1 mouse_genomes_project 1 72560697 72566411 - Zfp142 protein_coding retained_intron MGP_AJ_T0020527.1 MGP_AJ_G0016138.1 mouse_genomes_project 1 72564043 72566592 - Zfp142 protein_coding processed_transcript MGP_AJ_T0102171.1 MGP_AJ_G0039914.1 mouse_genomes_project 1 100811603 100893726 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0000541.1 MGP_AJ_G0000482.1 mouse_genomes_project 1 82615458 82619711 - TEC TEC MGP_AJ_T0002988.1 MGP_AJ_G0002801.1 mouse_genomes_project 1 189929197 189930034 + A230020J21Rik antisense antisense MGP_AJ_T0002989.1 MGP_AJ_G0002801.1 mouse_genomes_project 1 189929198 189935124 + A230020J21Rik antisense antisense MGP_AJ_T0000807.1 MGP_AJ_G0000743.1 mouse_genomes_project 1 193921025 193923322 + TEC TEC MGP_AJ_T0099207.1 MGP_AJ_G0037173.1 mouse_genomes_project 1 135733601 135733705 - Gm25609 snRNA snRNA MGP_AJ_T0012250.1 MGP_AJ_G0010345.1 mouse_genomes_project 1 136883487 136883638 + processed_pseudogene processed_pseudogene MGP_AJ_T0002796.1 MGP_AJ_G0002652.1 mouse_genomes_project 1 40799389 40800637 + 8430432A02Rik antisense antisense MGP_AJ_T0023349.1 MGP_AJ_G0016722.1 mouse_genomes_project 1 169707957 169732552 - MGP_AJ_P0023349 Sdhc protein_coding protein_coding MGP_AJ_T0023350.1 MGP_AJ_G0016722.1 mouse_genomes_project 1 169710192 169732540 - MGP_AJ_P0023350 Sdhc protein_coding protein_coding MGP_AJ_T0023351.1 MGP_AJ_G0016722.1 mouse_genomes_project 1 169720721 169732537 - MGP_AJ_P0023351 Sdhc protein_coding protein_coding MGP_AJ_T0000607.1 MGP_AJ_G0000548.1 mouse_genomes_project 1 125610605 125615368 + TEC TEC MGP_AJ_T0102185.1 MGP_AJ_G0039928.1 mouse_genomes_project 1 138440748 138493110 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0017033.1 MGP_AJ_G0015086.1 mouse_genomes_project 1 134632938 134638526 - Gm15850 processed_transcript processed_transcript MGP_AJ_T0017034.1 MGP_AJ_G0015086.1 mouse_genomes_project 1 134634479 134638514 - Gm15850 processed_transcript processed_transcript MGP_AJ_T0017035.1 MGP_AJ_G0015086.1 mouse_genomes_project 1 134634479 134638514 - Gm15850 processed_transcript processed_transcript MGP_AJ_T0017036.1 MGP_AJ_G0015086.1 mouse_genomes_project 1 134634479 134638514 - Gm15850 processed_transcript processed_transcript MGP_AJ_T0012164.1 MGP_AJ_G0010259.1 mouse_genomes_project 1 100264324 100264560 - processed_pseudogene processed_pseudogene MGP_AJ_T0021244.1 MGP_AJ_G0016280.1 mouse_genomes_project 1 89159450 89167991 - MGP_AJ_P0021244 Rab17 protein_coding protein_coding MGP_AJ_T0021245.1 MGP_AJ_G0016280.1 mouse_genomes_project 1 89159452 89165991 - MGP_AJ_P0021245 Rab17 protein_coding protein_coding MGP_AJ_T0021246.1 MGP_AJ_G0016280.1 mouse_genomes_project 1 89160048 89167878 - Rab17 protein_coding processed_transcript MGP_AJ_T0021247.1 MGP_AJ_G0016280.1 mouse_genomes_project 1 89160171 89165941 - Rab17 protein_coding processed_transcript MGP_AJ_T0021248.1 MGP_AJ_G0016280.1 mouse_genomes_project 1 89161293 89167974 - MGP_AJ_P0021248 Rab17 protein_coding protein_coding MGP_AJ_T0012140.1 MGP_AJ_G0010235.1 mouse_genomes_project 1 89488816 89489708 + processed_pseudogene processed_pseudogene MGP_AJ_T0021884.1 MGP_AJ_G0016416.1 mouse_genomes_project 1 128776246 128825887 - protein_coding processed_transcript MGP_AJ_T0021621.1 MGP_AJ_G0016363.1 mouse_genomes_project 1 105932327 105955755 + MGP_AJ_P0021621 Serpinb2 protein_coding protein_coding MGP_AJ_T0021622.1 MGP_AJ_G0016363.1 mouse_genomes_project 1 105932401 105955749 + MGP_AJ_P0021622 Serpinb2 protein_coding protein_coding MGP_AJ_T0021623.1 MGP_AJ_G0016363.1 mouse_genomes_project 1 105948246 105966208 + MGP_AJ_P0021623 Serpinb2 protein_coding nonsense_mediated_decay MGP_AJ_T0021624.1 MGP_AJ_G0016363.1 mouse_genomes_project 1 105949960 105962693 + MGP_AJ_P0021624 Serpinb2 protein_coding nonsense_mediated_decay MGP_AJ_T0005751.1 MGP_AJ_G0004829.1 mouse_genomes_project 1 59392023 59393101 + Gm28449 lincRNA lincRNA MGP_AJ_T0000470.1 MGP_AJ_G0000411.1 mouse_genomes_project 1 52539352 52540762 - TEC TEC MGP_AJ_T0005999.1 MGP_AJ_G0005026.1 mouse_genomes_project 1 176242625 176251537 + Gm37306 lincRNA lincRNA MGP_AJ_T0016990.1 MGP_AJ_G0015072.1 mouse_genomes_project 1 54794713 54798500 + 9130024F11Rik processed_transcript antisense MGP_AJ_T0016991.1 MGP_AJ_G0015072.1 mouse_genomes_project 1 54794779 54796910 + 9130024F11Rik processed_transcript antisense MGP_AJ_T0016992.1 MGP_AJ_G0015072.1 mouse_genomes_project 1 54794781 54865505 + 9130024F11Rik processed_transcript antisense MGP_AJ_T0016993.1 MGP_AJ_G0015072.1 mouse_genomes_project 1 54795633 54798496 + 9130024F11Rik processed_transcript TEC MGP_AJ_T0016994.1 MGP_AJ_G0015072.1 mouse_genomes_project 1 54863382 54873073 + 9130024F11Rik processed_transcript antisense MGP_AJ_T0005860.1 MGP_AJ_G0004915.1 mouse_genomes_project 1 104338235 104349211 - Gm7160 lincRNA lincRNA MGP_AJ_T0005861.1 MGP_AJ_G0004915.1 mouse_genomes_project 1 104348155 104349181 - Gm7160 lincRNA lincRNA MGP_AJ_T0000387.1 MGP_AJ_G0000331.1 mouse_genomes_project 1 13196881 13200050 + TEC TEC MGP_AJ_T0005903.1 MGP_AJ_G0004948.1 mouse_genomes_project 1 130644155 130646892 - 1700037F24Rik lincRNA lincRNA MGP_AJ_T0018728.1 MGP_AJ_G0015794.1 mouse_genomes_project 1 1921800 2004711 + MGP_AJ_P0018728 Gm37988 protein_coding nonsense_mediated_decay MGP_AJ_T0009563.1 MGP_AJ_G0007685.1 mouse_genomes_project 1 184188660 184188727 + Mir194-1 miRNA miRNA MGP_AJ_T0020371.1 MGP_AJ_G0016107.1 mouse_genomes_project 1 68919271 68988971 - MGP_AJ_P0020371 Bard1 protein_coding protein_coding MGP_AJ_T0012299.1 MGP_AJ_G0010394.1 mouse_genomes_project 1 155862507 155862906 - processed_pseudogene processed_pseudogene MGP_AJ_T0021326.1 MGP_AJ_G0016295.1 mouse_genomes_project 1 90131972 90351737 - MGP_AJ_P0021326 Hdac4 protein_coding unknown_likely_coding MGP_AJ_T0021327.1 MGP_AJ_G0016295.1 mouse_genomes_project 1 90131972 90384468 - MGP_AJ_P0021327 Hdac4 protein_coding protein_coding MGP_AJ_T0021328.1 MGP_AJ_G0016295.1 mouse_genomes_project 1 90135926 90351853 - MGP_AJ_P0021328 Hdac4 protein_coding protein_coding MGP_AJ_T0021329.1 MGP_AJ_G0016295.1 mouse_genomes_project 1 90136111 90210368 - Hdac4 protein_coding processed_transcript MGP_AJ_T0021330.1 MGP_AJ_G0016295.1 mouse_genomes_project 1 90136356 90138056 - Hdac4 protein_coding retained_intron MGP_AJ_T0021331.1 MGP_AJ_G0016295.1 mouse_genomes_project 1 90158651 90178781 - MGP_AJ_P0021331 Hdac4 protein_coding protein_coding MGP_AJ_T0021332.1 MGP_AJ_G0016295.1 mouse_genomes_project 1 90192374 90196136 - Hdac4 protein_coding retained_intron MGP_AJ_T0021333.1 MGP_AJ_G0016295.1 mouse_genomes_project 1 90207182 90210373 - Hdac4 protein_coding retained_intron MGP_AJ_T0021334.1 MGP_AJ_G0016295.1 mouse_genomes_project 1 90233340 90384424 - MGP_AJ_P0021334 Hdac4 protein_coding protein_coding MGP_AJ_T0021335.1 MGP_AJ_G0016295.1 mouse_genomes_project 1 90233351 90315768 - Hdac4 protein_coding processed_transcript MGP_AJ_T0021336.1 MGP_AJ_G0016295.1 mouse_genomes_project 1 90233435 90315768 - Hdac4 protein_coding processed_transcript MGP_AJ_T0012056.1 MGP_AJ_G0010151.1 mouse_genomes_project 1 58706650 58707993 + processed_pseudogene processed_pseudogene MGP_AJ_T0012318.1 MGP_AJ_G0010413.1 mouse_genomes_project 1 164120765 164121597 - processed_pseudogene processed_pseudogene MGP_AJ_T0102207.1 MGP_AJ_G0039950.1 mouse_genomes_project 1 179918512 179918623 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0098861.1 MGP_AJ_G0036845.1 mouse_genomes_project 1 34523854 34526792 - Gm38115 sense_intronic sense_intronic MGP_AJ_T0100442.1 MGP_AJ_G0038408.1 mouse_genomes_project 1 84361387 84361520 - Snora75 snoRNA snoRNA MGP_AJ_T0098372.1 MGP_AJ_G0036356.1 mouse_genomes_project 1 32318317 32319266 + pseudogene pseudogene MGP_AJ_T0012020.1 MGP_AJ_G0010115.1 mouse_genomes_project 1 47953061 47953808 - processed_pseudogene processed_pseudogene MGP_AJ_T0012186.1 MGP_AJ_G0010281.1 mouse_genomes_project 1 108777002 108777930 + processed_pseudogene processed_pseudogene MGP_AJ_T0000540.1 MGP_AJ_G0000481.1 mouse_genomes_project 1 82351469 82354366 - TEC TEC MGP_AJ_T0100461.1 MGP_AJ_G0038427.1 mouse_genomes_project 1 126826773 126826907 + Gm23902 snoRNA snoRNA MGP_AJ_T0099211.1 MGP_AJ_G0037177.1 mouse_genomes_project 1 143028564 143028671 - Gm23672 snRNA snRNA MGP_AJ_T0000776.1 MGP_AJ_G0000713.1 mouse_genomes_project 1 181839208 181842038 + TEC TEC MGP_AJ_T0024251.1 MGP_AJ_G0016932.1 mouse_genomes_project 1 191047823 191365000 + MGP_AJ_P0024251 Kcnh1 protein_coding protein_coding MGP_AJ_T0024252.1 MGP_AJ_G0016932.1 mouse_genomes_project 1 191047823 191365000 + MGP_AJ_P0024252 Kcnh1 protein_coding protein_coding MGP_AJ_T0024253.1 MGP_AJ_G0016932.1 mouse_genomes_project 1 191294482 191365000 + MGP_AJ_P0024253 Kcnh1 protein_coding protein_coding MGP_AJ_T0019435.1 MGP_AJ_G0015931.1 mouse_genomes_project 1 35632539 35644658 - MGP_AJ_P0019435 Txndc9 protein_coding protein_coding MGP_AJ_T0019436.1 MGP_AJ_G0015931.1 mouse_genomes_project 1 35634744 35645236 - MGP_AJ_P0019436 Txndc9 protein_coding protein_coding MGP_AJ_T0019437.1 MGP_AJ_G0015931.1 mouse_genomes_project 1 35634744 35644586 - MGP_AJ_P0019437 Txndc9 protein_coding protein_coding MGP_AJ_T0019438.1 MGP_AJ_G0015931.1 mouse_genomes_project 1 35634746 35644567 - Txndc9 protein_coding retained_intron MGP_AJ_T0019439.1 MGP_AJ_G0015931.1 mouse_genomes_project 1 35634990 35643196 - MGP_AJ_P0019439 Txndc9 protein_coding protein_coding MGP_AJ_T0019440.1 MGP_AJ_G0015931.1 mouse_genomes_project 1 35634993 35644959 - MGP_AJ_P0019440 Txndc9 protein_coding protein_coding MGP_AJ_T0019441.1 MGP_AJ_G0015931.1 mouse_genomes_project 1 35637608 35644009 - MGP_AJ_P0019441 Txndc9 protein_coding protein_coding MGP_AJ_T0019442.1 MGP_AJ_G0015931.1 mouse_genomes_project 1 35643265 35644605 - Txndc9 protein_coding retained_intron MGP_AJ_T0020135.1 MGP_AJ_G0016061.1 mouse_genomes_project 1 58406863 58491262 - MGP_AJ_P0020135 Raph1 protein_coding protein_coding MGP_AJ_T0020136.1 MGP_AJ_G0016061.1 mouse_genomes_project 1 58407756 58424113 - MGP_AJ_P0020136 Raph1 protein_coding protein_coding MGP_AJ_T0020137.1 MGP_AJ_G0016061.1 mouse_genomes_project 1 58407807 58491248 - MGP_AJ_P0020137 Raph1 protein_coding protein_coding MGP_AJ_T0020138.1 MGP_AJ_G0016061.1 mouse_genomes_project 1 58415238 58491252 - MGP_AJ_P0020138 Raph1 protein_coding protein_coding MGP_AJ_T0020139.1 MGP_AJ_G0016061.1 mouse_genomes_project 1 58417885 58420844 - Raph1 protein_coding retained_intron MGP_AJ_T0020140.1 MGP_AJ_G0016061.1 mouse_genomes_project 1 58426165 58427828 - Raph1 protein_coding retained_intron MGP_AJ_T0020141.1 MGP_AJ_G0016061.1 mouse_genomes_project 1 58438371 58446843 - Raph1 protein_coding retained_intron MGP_AJ_T0020142.1 MGP_AJ_G0016061.1 mouse_genomes_project 1 58450244 58491587 - MGP_AJ_P0020142 Raph1 protein_coding protein_coding MGP_AJ_T0006036.1 MGP_AJ_G0005051.1 mouse_genomes_project 1 183614239 183616720 + Gm34342 lincRNA lincRNA MGP_AJ_T0005721.1 MGP_AJ_G0004805.1 mouse_genomes_project 1 48164178 48164706 - Gm29665 lincRNA lincRNA MGP_AJ_T0017044.1 MGP_AJ_G0015091.1 mouse_genomes_project 1 148450581 148483997 - Ptgs2os processed_transcript antisense MGP_AJ_T0017045.1 MGP_AJ_G0015091.1 mouse_genomes_project 1 148482360 148484143 - Ptgs2os processed_transcript retained_intron MGP_AJ_T0000694.1 MGP_AJ_G0000633.1 mouse_genomes_project 1 155344580 155348684 - TEC TEC MGP_AJ_T0024329.1 MGP_AJ_G0016945.1 mouse_genomes_project 1 193815425 193837998 + MGP_AJ_P0024329 Cd34 protein_coding protein_coding MGP_AJ_T0024330.1 MGP_AJ_G0016945.1 mouse_genomes_project 1 193815481 193837998 + MGP_AJ_P0024330 Cd34 protein_coding protein_coding MGP_AJ_T0024331.1 MGP_AJ_G0016945.1 mouse_genomes_project 1 193815511 193827479 + Cd34 protein_coding retained_intron MGP_AJ_T0024332.1 MGP_AJ_G0016945.1 mouse_genomes_project 1 193815557 193817951 + Cd34 protein_coding retained_intron MGP_AJ_T0024333.1 MGP_AJ_G0016945.1 mouse_genomes_project 1 193815601 193835269 + MGP_AJ_P0024333 Cd34 protein_coding nonsense_mediated_decay MGP_AJ_T0000785.1 MGP_AJ_G0000722.1 mouse_genomes_project 1 186103898 186107766 + TEC TEC MGP_AJ_T0005656.1 MGP_AJ_G0004759.1 mouse_genomes_project 1 15681844 15687928 + lincRNA lincRNA MGP_AJ_T0102154.1 MGP_AJ_G0039897.1 mouse_genomes_project 1 67954562 67954650 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0100409.1 MGP_AJ_G0038375.1 mouse_genomes_project 1 18251249 18251381 - Gm24723 snoRNA snoRNA MGP_AJ_T0002762.1 MGP_AJ_G0002625.1 mouse_genomes_project 1 15036843 15088308 - Gm16070 antisense antisense MGP_AJ_T0002763.1 MGP_AJ_G0002625.1 mouse_genomes_project 1 15054543 15088670 - Gm16070 antisense antisense MGP_AJ_T0002764.1 MGP_AJ_G0002625.1 mouse_genomes_project 1 15086007 15088279 - Gm16070 antisense antisense MGP_AJ_T0021373.1 MGP_AJ_G0016310.1 mouse_genomes_project 1 91130777 91140836 + MGP_AJ_P0021373 Rnpepl1 protein_coding protein_coding MGP_AJ_T0021374.1 MGP_AJ_G0016310.1 mouse_genomes_project 1 91130819 91140567 + Rnpepl1 protein_coding retained_intron MGP_AJ_T0021375.1 MGP_AJ_G0016310.1 mouse_genomes_project 1 91130847 91133403 + Rnpepl1 protein_coding retained_intron MGP_AJ_T0021376.1 MGP_AJ_G0016310.1 mouse_genomes_project 1 91131115 91136732 + MGP_AJ_P0021376 Rnpepl1 protein_coding nonsense_mediated_decay MGP_AJ_T0021377.1 MGP_AJ_G0016310.1 mouse_genomes_project 1 91131203 91135928 + MGP_AJ_P0021377 Rnpepl1 protein_coding protein_coding MGP_AJ_T0021378.1 MGP_AJ_G0016310.1 mouse_genomes_project 1 91135838 91140567 + Rnpepl1 protein_coding retained_intron MGP_AJ_T0021379.1 MGP_AJ_G0016310.1 mouse_genomes_project 1 91136785 91140567 + MGP_AJ_P0021379 Rnpepl1 protein_coding protein_coding MGP_AJ_T0021380.1 MGP_AJ_G0016310.1 mouse_genomes_project 1 91136799 91139211 + Rnpepl1 protein_coding retained_intron MGP_AJ_T0021381.1 MGP_AJ_G0016310.1 mouse_genomes_project 1 91137006 91138068 + Rnpepl1 protein_coding retained_intron MGP_AJ_T0021382.1 MGP_AJ_G0016310.1 mouse_genomes_project 1 91137141 91139060 + MGP_AJ_P0021382 Rnpepl1 protein_coding protein_coding MGP_AJ_T0021383.1 MGP_AJ_G0016310.1 mouse_genomes_project 1 91137410 91139212 + Rnpepl1 protein_coding retained_intron MGP_AJ_T0021384.1 MGP_AJ_G0016310.1 mouse_genomes_project 1 91139608 91144379 + MGP_AJ_P0021384 Rnpepl1 protein_coding nonsense_mediated_decay MGP_AJ_T0021608.1 MGP_AJ_G0016358.1 mouse_genomes_project 1 105216867 105239699 + MGP_AJ_P0021608 Serpinb5 protein_coding protein_coding MGP_AJ_T0021609.1 MGP_AJ_G0016358.1 mouse_genomes_project 1 105216868 105236694 + MGP_AJ_P0021609 Serpinb5 protein_coding protein_coding MGP_AJ_T0021610.1 MGP_AJ_G0016358.1 mouse_genomes_project 1 105216897 105239699 + MGP_AJ_P0021610 Serpinb5 protein_coding protein_coding MGP_AJ_T0021611.1 MGP_AJ_G0016358.1 mouse_genomes_project 1 105226596 105239698 + MGP_AJ_P0021611 Serpinb5 protein_coding protein_coding MGP_AJ_T0006004.1 MGP_AJ_G0005030.1 mouse_genomes_project 1 179386269 179397861 - Gm37267 lincRNA lincRNA MGP_AJ_T0022570.1 MGP_AJ_G0016563.1 mouse_genomes_project 1 149848232 149865253 + Trmt1l protein_coding retained_intron MGP_AJ_T0022571.1 MGP_AJ_G0016563.1 mouse_genomes_project 1 149848232 149881392 + MGP_AJ_P0022571 Trmt1l protein_coding protein_coding MGP_AJ_T0022572.1 MGP_AJ_G0016563.1 mouse_genomes_project 1 149848327 149858160 + Trmt1l protein_coding retained_intron MGP_AJ_T0022573.1 MGP_AJ_G0016563.1 mouse_genomes_project 1 149848332 149873189 + Trmt1l protein_coding retained_intron MGP_AJ_T0022574.1 MGP_AJ_G0016563.1 mouse_genomes_project 1 149848338 149850326 + Trmt1l protein_coding retained_intron MGP_AJ_T0022575.1 MGP_AJ_G0016563.1 mouse_genomes_project 1 149848357 149858160 + Trmt1l protein_coding retained_intron MGP_AJ_T0022576.1 MGP_AJ_G0016563.1 mouse_genomes_project 1 149848396 149881392 + MGP_AJ_P0022576 Trmt1l protein_coding nonsense_mediated_decay MGP_AJ_T0011238.1 MGP_AJ_G0009360.1 mouse_genomes_project 1 11256659 11256967 + Gm25491 misc_RNA misc_RNA MGP_AJ_T0021005.1 MGP_AJ_G0016223.1 mouse_genomes_project 1 84104586 84117530 - MGP_AJ_P0021005 Htr2b protein_coding protein_coding MGP_AJ_T0021006.1 MGP_AJ_G0016223.1 mouse_genomes_project 1 84105661 84116232 - MGP_AJ_P0021006 Htr2b protein_coding protein_coding MGP_AJ_T0002884.1 MGP_AJ_G0002717.1 mouse_genomes_project 1 130582629 130585926 + Gm29629 antisense antisense MGP_AJ_T0000737.1 MGP_AJ_G0000676.1 mouse_genomes_project 1 170258849 170260563 + TEC TEC MGP_AJ_T0023142.1 MGP_AJ_G0016673.1 mouse_genomes_project 1 163843026 163970448 - MGP_AJ_P0023142 Dcaf6 protein_coding protein_coding MGP_AJ_T0023143.1 MGP_AJ_G0016673.1 mouse_genomes_project 1 163843669 163866531 - Dcaf6 protein_coding retained_intron MGP_AJ_T0023144.1 MGP_AJ_G0016673.1 mouse_genomes_project 1 163865590 163905262 - MGP_AJ_P0023144 Dcaf6 protein_coding protein_coding MGP_AJ_T0023145.1 MGP_AJ_G0016673.1 mouse_genomes_project 1 163866020 163905277 - MGP_AJ_P0023145 Dcaf6 protein_coding protein_coding MGP_AJ_T0023146.1 MGP_AJ_G0016673.1 mouse_genomes_project 1 163881566 163970458 - Dcaf6 protein_coding processed_transcript MGP_AJ_T0012348.1 MGP_AJ_G0010443.1 mouse_genomes_project 1 179951710 179952357 - processed_pseudogene processed_pseudogene MGP_AJ_T0005880.1 MGP_AJ_G0004930.1 mouse_genomes_project 1 118822404 118825055 + 1700012E03Rik lincRNA lincRNA MGP_AJ_T0023140.1 MGP_AJ_G0016672.1 mouse_genomes_project 1 163810095 163836081 + MGP_AJ_P0023140 Gpr161 protein_coding protein_coding MGP_AJ_T0023141.1 MGP_AJ_G0016672.1 mouse_genomes_project 1 163816915 163841074 + MGP_AJ_P0023141 Gpr161 protein_coding protein_coding MGP_AJ_T0005745.1 MGP_AJ_G0004823.1 mouse_genomes_project 1 58693320 58700609 - Gm11579 lincRNA lincRNA MGP_AJ_T0023878.1 MGP_AJ_G0016854.1 mouse_genomes_project 1 179738058 179755398 + MGP_AJ_P0023878 Sde2 protein_coding protein_coding MGP_AJ_T0023879.1 MGP_AJ_G0016854.1 mouse_genomes_project 1 179749427 179753581 + Sde2 protein_coding retained_intron MGP_AJ_T0000759.1 MGP_AJ_G0000697.1 mouse_genomes_project 1 177199925 177201796 + TEC TEC MGP_AJ_T0022182.1 MGP_AJ_G0016487.1 mouse_genomes_project 1 132809150 132824805 - MGP_AJ_P0022182 Tmem183a protein_coding protein_coding MGP_AJ_T0022183.1 MGP_AJ_G0016487.1 mouse_genomes_project 1 132810735 132824767 - MGP_AJ_P0022183 Tmem183a protein_coding nonsense_mediated_decay MGP_AJ_T0022184.1 MGP_AJ_G0016487.1 mouse_genomes_project 1 132810963 132813102 - Tmem183a protein_coding retained_intron MGP_AJ_T0022185.1 MGP_AJ_G0016487.1 mouse_genomes_project 1 132818257 132824779 - Tmem183a protein_coding retained_intron MGP_AJ_T0022186.1 MGP_AJ_G0016487.1 mouse_genomes_project 1 132818523 132824516 - MGP_AJ_P0022186 Tmem183a protein_coding protein_coding MGP_AJ_T0021906.1 MGP_AJ_G0016423.1 mouse_genomes_project 1 129166451 129179116 + MGP_AJ_P0021906 AA986860 protein_coding protein_coding MGP_AJ_T0021907.1 MGP_AJ_G0016423.1 mouse_genomes_project 1 129166585 129176957 + AA986860 protein_coding processed_transcript MGP_AJ_T0021908.1 MGP_AJ_G0016423.1 mouse_genomes_project 1 129174765 129179115 + AA986860 protein_coding retained_intron MGP_AJ_T0012242.1 MGP_AJ_G0010337.1 mouse_genomes_project 1 132497009 132497947 - processed_pseudogene processed_pseudogene MGP_AJ_T0100406.1 MGP_AJ_G0038372.1 mouse_genomes_project 1 14862632 14862743 + Gm25166 snoRNA snoRNA MGP_AJ_T0099234.1 MGP_AJ_G0037200.1 mouse_genomes_project 1 180730696 180730790 - Gm23690 snRNA snRNA MGP_AJ_T0019391.1 MGP_AJ_G0015922.1 mouse_genomes_project 1 35058772 35066876 + MGP_AJ_P0019391 Unc50 protein_coding protein_coding MGP_AJ_T0019392.1 MGP_AJ_G0015922.1 mouse_genomes_project 1 35058803 35067016 + MGP_AJ_P0019392 Unc50 protein_coding protein_coding MGP_AJ_T0019393.1 MGP_AJ_G0015922.1 mouse_genomes_project 1 35058810 35065371 + MGP_AJ_P0019393 Unc50 protein_coding protein_coding MGP_AJ_T0019394.1 MGP_AJ_G0015922.1 mouse_genomes_project 1 35058819 35065163 + MGP_AJ_P0019394 Unc50 protein_coding protein_coding MGP_AJ_T0019395.1 MGP_AJ_G0015922.1 mouse_genomes_project 1 35058835 35066879 + MGP_AJ_P0019395 Unc50 protein_coding protein_coding MGP_AJ_T0019396.1 MGP_AJ_G0015922.1 mouse_genomes_project 1 35058841 35060188 + MGP_AJ_P0019396 Unc50 protein_coding protein_coding MGP_AJ_T0019397.1 MGP_AJ_G0015922.1 mouse_genomes_project 1 35059977 35065505 + Unc50 protein_coding retained_intron MGP_AJ_T0000520.1 MGP_AJ_G0000461.1 mouse_genomes_project 1 75077377 75081108 - TEC TEC MGP_AJ_T0018773.1 MGP_AJ_G0015802.1 mouse_genomes_project 1 3637865 4023504 + MGP_AJ_P0018773 St18 protein_coding protein_coding MGP_AJ_T0018774.1 MGP_AJ_G0015802.1 mouse_genomes_project 1 3637965 4023510 + MGP_AJ_P0018774 St18 protein_coding protein_coding MGP_AJ_T0018775.1 MGP_AJ_G0015802.1 mouse_genomes_project 1 3891309 4023510 + MGP_AJ_P0018775 St18 protein_coding protein_coding MGP_AJ_T0018776.1 MGP_AJ_G0015802.1 mouse_genomes_project 1 3891311 3958247 + MGP_AJ_P0018776 St18 protein_coding protein_coding MGP_AJ_T0018777.1 MGP_AJ_G0015802.1 mouse_genomes_project 1 3891328 3958372 + MGP_AJ_P0018777 St18 protein_coding protein_coding MGP_AJ_T0018778.1 MGP_AJ_G0015802.1 mouse_genomes_project 1 3891359 4022040 + MGP_AJ_P0018778 St18 protein_coding protein_coding MGP_AJ_T0018779.1 MGP_AJ_G0015802.1 mouse_genomes_project 1 3891360 4021383 + MGP_AJ_P0018779 St18 protein_coding protein_coding MGP_AJ_T0018780.1 MGP_AJ_G0015802.1 mouse_genomes_project 1 3896117 3965501 + MGP_AJ_P0018780 St18 protein_coding protein_coding MGP_AJ_T0018781.1 MGP_AJ_G0015802.1 mouse_genomes_project 1 3898814 4023510 + MGP_AJ_P0018781 St18 protein_coding protein_coding MGP_AJ_T0018782.1 MGP_AJ_G0015802.1 mouse_genomes_project 1 3965603 3972178 + MGP_AJ_P0018782 St18 protein_coding nonsense_mediated_decay MGP_AJ_T0018783.1 MGP_AJ_G0015802.1 mouse_genomes_project 1 3980394 3997069 + St18 protein_coding processed_transcript MGP_AJ_T0018784.1 MGP_AJ_G0015802.1 mouse_genomes_project 1 3990640 4011548 + St18 protein_coding processed_transcript MGP_AJ_T0018785.1 MGP_AJ_G0015802.1 mouse_genomes_project 1 4019910 4022174 + MGP_AJ_P0018785 St18 protein_coding protein_coding MGP_AJ_T0005737.1 MGP_AJ_G0004817.1 mouse_genomes_project 1 54948253 54950314 + 1700126A01Rik lincRNA lincRNA MGP_AJ_T0011264.1 MGP_AJ_G0009386.1 mouse_genomes_project 1 193733871 193734165 + Gm23885 misc_RNA misc_RNA MGP_AJ_T0022560.1 MGP_AJ_G0016562.1 mouse_genomes_project 1 149786901 149848146 - MGP_AJ_P0022560 Swt1 protein_coding protein_coding MGP_AJ_T0022561.1 MGP_AJ_G0016562.1 mouse_genomes_project 1 149787564 149848127 - MGP_AJ_P0022561 Swt1 protein_coding nonsense_mediated_decay MGP_AJ_T0022562.1 MGP_AJ_G0016562.1 mouse_genomes_project 1 149789609 149791559 - Swt1 protein_coding retained_intron MGP_AJ_T0022563.1 MGP_AJ_G0016562.1 mouse_genomes_project 1 149798366 149803485 - Swt1 protein_coding retained_intron MGP_AJ_T0022564.1 MGP_AJ_G0016562.1 mouse_genomes_project 1 149810394 149822801 - MGP_AJ_P0022564 Swt1 protein_coding protein_coding MGP_AJ_T0022565.1 MGP_AJ_G0016562.1 mouse_genomes_project 1 149820895 149843510 - MGP_AJ_P0022565 Swt1 protein_coding protein_coding MGP_AJ_T0022566.1 MGP_AJ_G0016562.1 mouse_genomes_project 1 149821530 149824353 - Swt1 protein_coding retained_intron MGP_AJ_T0022567.1 MGP_AJ_G0016562.1 mouse_genomes_project 1 149830887 149832709 - Swt1 protein_coding retained_intron MGP_AJ_T0022568.1 MGP_AJ_G0016562.1 mouse_genomes_project 1 149836406 149843295 - Swt1 protein_coding retained_intron MGP_AJ_T0022569.1 MGP_AJ_G0016562.1 mouse_genomes_project 1 149846714 149848146 - Swt1 protein_coding retained_intron MGP_AJ_T0000401.1 MGP_AJ_G0000343.1 mouse_genomes_project 1 22681869 22687351 - TEC TEC MGP_AJ_T0012039.1 MGP_AJ_G0010134.1 mouse_genomes_project 1 53200036 53200384 - processed_pseudogene processed_pseudogene MGP_AJ_T0012221.1 MGP_AJ_G0010316.1 mouse_genomes_project 1 120564518 120565353 + processed_pseudogene processed_pseudogene MGP_AJ_T0020110.1 MGP_AJ_G0016058.1 mouse_genomes_project 1 58105034 58259414 + MGP_AJ_P0020110 Nbeal1 protein_coding protein_coding MGP_AJ_T0020111.1 MGP_AJ_G0016058.1 mouse_genomes_project 1 58105247 58110334 + Nbeal1 protein_coding retained_intron MGP_AJ_T0020112.1 MGP_AJ_G0016058.1 mouse_genomes_project 1 58146546 58159571 + MGP_AJ_P0020112 Nbeal1 protein_coding protein_coding MGP_AJ_T0020113.1 MGP_AJ_G0016058.1 mouse_genomes_project 1 58151566 58154243 + Nbeal1 protein_coding retained_intron MGP_AJ_T0020114.1 MGP_AJ_G0016058.1 mouse_genomes_project 1 58159473 58206308 + Nbeal1 protein_coding retained_intron MGP_AJ_T0020115.1 MGP_AJ_G0016058.1 mouse_genomes_project 1 58184580 58244376 + MGP_AJ_P0020115 Nbeal1 protein_coding protein_coding MGP_AJ_T0020116.1 MGP_AJ_G0016058.1 mouse_genomes_project 1 58184588 58252552 + MGP_AJ_P0020116 Nbeal1 protein_coding nonsense_mediated_decay MGP_AJ_T0020117.1 MGP_AJ_G0016058.1 mouse_genomes_project 1 58190413 58193631 + Nbeal1 protein_coding retained_intron MGP_AJ_T0020118.1 MGP_AJ_G0016058.1 mouse_genomes_project 1 58203039 58216049 + MGP_AJ_P0020118 Nbeal1 protein_coding protein_coding MGP_AJ_T0020119.1 MGP_AJ_G0016058.1 mouse_genomes_project 1 58208204 58210466 + Nbeal1 protein_coding retained_intron MGP_AJ_T0020425.1 MGP_AJ_G0016122.1 mouse_genomes_project 1 71871534 72090729 - MGP_AJ_P0020425 Tns1 protein_coding protein_coding MGP_AJ_T0020426.1 MGP_AJ_G0016122.1 mouse_genomes_project 1 71871535 72090731 - MGP_AJ_P0020426 Tns1 protein_coding protein_coding MGP_AJ_T0020427.1 MGP_AJ_G0016122.1 mouse_genomes_project 1 71871535 72057611 - MGP_AJ_P0020427 Tns1 protein_coding protein_coding MGP_AJ_T0020428.1 MGP_AJ_G0016122.1 mouse_genomes_project 1 71875214 71889820 - MGP_AJ_P0020428 Tns1 protein_coding protein_coding MGP_AJ_T0020429.1 MGP_AJ_G0016122.1 mouse_genomes_project 1 71875396 71957869 - MGP_AJ_P0020429 Tns1 protein_coding protein_coding MGP_AJ_T0020430.1 MGP_AJ_G0016122.1 mouse_genomes_project 1 71875420 71957869 - MGP_AJ_P0020430 Tns1 protein_coding protein_coding MGP_AJ_T0020431.1 MGP_AJ_G0016122.1 mouse_genomes_project 1 71886438 71902314 - MGP_AJ_P0020431 Tns1 protein_coding protein_coding MGP_AJ_T0020432.1 MGP_AJ_G0016122.1 mouse_genomes_project 1 71886725 71889524 - Tns1 protein_coding retained_intron MGP_AJ_T0020433.1 MGP_AJ_G0016122.1 mouse_genomes_project 1 71886725 71892118 - Tns1 protein_coding processed_transcript MGP_AJ_T0020434.1 MGP_AJ_G0016122.1 mouse_genomes_project 1 71886938 71891812 - Tns1 protein_coding processed_transcript MGP_AJ_T0020435.1 MGP_AJ_G0016122.1 mouse_genomes_project 1 71914668 71924337 - MGP_AJ_P0020435 Tns1 protein_coding protein_coding MGP_AJ_T0020436.1 MGP_AJ_G0016122.1 mouse_genomes_project 1 71943226 71949627 - Tns1 protein_coding retained_intron MGP_AJ_T0020437.1 MGP_AJ_G0016122.1 mouse_genomes_project 1 71952255 71960976 - Tns1 protein_coding retained_intron MGP_AJ_T0020438.1 MGP_AJ_G0016122.1 mouse_genomes_project 1 71952907 71978934 - Tns1 protein_coding processed_transcript MGP_AJ_T0020439.1 MGP_AJ_G0016122.1 mouse_genomes_project 1 71954634 71960976 - Tns1 protein_coding processed_transcript MGP_AJ_T0020440.1 MGP_AJ_G0016122.1 mouse_genomes_project 1 71954739 71964060 - MGP_AJ_P0020440 Tns1 protein_coding protein_coding MGP_AJ_T0020441.1 MGP_AJ_G0016122.1 mouse_genomes_project 1 71955698 72001217 - MGP_AJ_P0020441 Tns1 protein_coding protein_coding MGP_AJ_T0020442.1 MGP_AJ_G0016122.1 mouse_genomes_project 1 71957308 71960195 - Tns1 protein_coding retained_intron MGP_AJ_T0020443.1 MGP_AJ_G0016122.1 mouse_genomes_project 1 71957784 72063156 - MGP_AJ_P0020443 Tns1 protein_coding protein_coding MGP_AJ_T0020444.1 MGP_AJ_G0016122.1 mouse_genomes_project 1 71959554 72063199 - MGP_AJ_P0020444 Tns1 protein_coding protein_coding MGP_AJ_T0020445.1 MGP_AJ_G0016122.1 mouse_genomes_project 1 71964797 72001241 - Tns1 protein_coding processed_transcript MGP_AJ_T0005783.1 MGP_AJ_G0004851.1 mouse_genomes_project 1 71248181 71280927 + Gm29185 lincRNA lincRNA MGP_AJ_T0012235.1 MGP_AJ_G0010330.1 mouse_genomes_project 1 127098202 127098624 + processed_pseudogene processed_pseudogene MGP_AJ_T0024042.1 MGP_AJ_G0016891.1 mouse_genomes_project 1 183778025 183880302 - MGP_AJ_P0024042 Mark1 protein_coding protein_coding MGP_AJ_T0024043.1 MGP_AJ_G0016891.1 mouse_genomes_project 1 183800744 183880207 - MGP_AJ_P0024043 Mark1 protein_coding protein_coding MGP_AJ_T0005854.1 MGP_AJ_G0004910.1 mouse_genomes_project 1 96453130 96469808 + Gm29461 lincRNA lincRNA MGP_AJ_T0012143.1 MGP_AJ_G0010238.1 mouse_genomes_project 1 90639336 90639748 - processed_pseudogene processed_pseudogene MGP_AJ_T0012122.1 MGP_AJ_G0010217.1 mouse_genomes_project 1 80969936 80971362 - processed_pseudogene processed_pseudogene MGP_AJ_T0023607.1 MGP_AJ_G0016784.1 mouse_genomes_project 1 171913006 171914873 - Ackr1 protein_coding processed_transcript MGP_AJ_T0023608.1 MGP_AJ_G0016784.1 mouse_genomes_project 1 171913010 171914625 - MGP_AJ_P0023608 Ackr1 protein_coding protein_coding MGP_AJ_T0023609.1 MGP_AJ_G0016784.1 mouse_genomes_project 1 171913012 171914796 - MGP_AJ_P0023609 Ackr1 protein_coding protein_coding MGP_AJ_T0023896.1 MGP_AJ_G0016859.1 mouse_genomes_project 1 179869401 179891038 - MGP_AJ_P0023896 Ephx1 protein_coding protein_coding MGP_AJ_T0023897.1 MGP_AJ_G0016859.1 mouse_genomes_project 1 179884262 179912522 - MGP_AJ_P0023897 Ephx1 protein_coding protein_coding MGP_AJ_T0023898.1 MGP_AJ_G0016859.1 mouse_genomes_project 1 179884262 179912522 - MGP_AJ_P0023898 Ephx1 protein_coding protein_coding MGP_AJ_T0023899.1 MGP_AJ_G0016859.1 mouse_genomes_project 1 179891016 179915808 - MGP_AJ_P0023899 Ephx1 protein_coding protein_coding MGP_AJ_T0020574.1 MGP_AJ_G0016148.1 mouse_genomes_project 1 72865223 72869148 - MGP_AJ_P0020574 Fev protein_coding protein_coding MGP_AJ_T0020575.1 MGP_AJ_G0016148.1 mouse_genomes_project 1 72865720 72869051 - MGP_AJ_P0020575 Fev protein_coding protein_coding MGP_AJ_T0020576.1 MGP_AJ_G0016148.1 mouse_genomes_project 1 72866121 72868342 - Fev protein_coding retained_intron MGP_AJ_T0102190.1 MGP_AJ_G0039933.1 mouse_genomes_project 1 171651667 171651967 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0102166.1 MGP_AJ_G0039909.1 mouse_genomes_project 1 90788147 90788330 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0019478.1 MGP_AJ_G0015938.1 mouse_genomes_project 1 36651212 36658319 + MGP_AJ_P0019478 Pdcl3 protein_coding nonsense_mediated_decay MGP_AJ_T0019479.1 MGP_AJ_G0015938.1 mouse_genomes_project 1 36651215 36659685 + MGP_AJ_P0019479 Pdcl3 protein_coding protein_coding MGP_AJ_T0019480.1 MGP_AJ_G0015938.1 mouse_genomes_project 1 36658561 36660048 + Pdcl3 protein_coding retained_intron MGP_AJ_T0021519.1 MGP_AJ_G0016341.1 mouse_genomes_project 1 95340953 95412262 - MGP_AJ_P0021519 Slco6c1 protein_coding protein_coding MGP_AJ_T0021520.1 MGP_AJ_G0016341.1 mouse_genomes_project 1 95341546 95412357 - MGP_AJ_P0021520 Slco6c1 protein_coding protein_coding MGP_AJ_T0012169.1 MGP_AJ_G0010264.1 mouse_genomes_project 1 102999331 103000121 - processed_pseudogene processed_pseudogene MGP_AJ_T0000424.1 MGP_AJ_G0000366.1 mouse_genomes_project 1 30029667 30031476 + TEC TEC MGP_AJ_T0000757.1 MGP_AJ_G0000696.1 mouse_genomes_project 1 177120459 177121053 - TEC TEC MGP_AJ_T0000758.1 MGP_AJ_G0000696.1 mouse_genomes_project 1 177120505 177121051 - TEC pseudogene MGP_AJ_T0022212.1 MGP_AJ_G0016494.1 mouse_genomes_project 1 133024581 133108412 + MGP_AJ_P0022212 Kdm5b protein_coding protein_coding MGP_AJ_T0022213.1 MGP_AJ_G0016494.1 mouse_genomes_project 1 133024602 133104679 + MGP_AJ_P0022213 Kdm5b protein_coding protein_coding MGP_AJ_T0022214.1 MGP_AJ_G0016494.1 mouse_genomes_project 1 133024617 133079693 + Kdm5b protein_coding retained_intron MGP_AJ_T0022215.1 MGP_AJ_G0016494.1 mouse_genomes_project 1 133024749 133103967 + MGP_AJ_P0022215 Kdm5b protein_coding unknown_likely_coding MGP_AJ_T0022216.1 MGP_AJ_G0016494.1 mouse_genomes_project 1 133057364 133060078 + Kdm5b protein_coding retained_intron MGP_AJ_T0022217.1 MGP_AJ_G0016494.1 mouse_genomes_project 1 133094823 133098045 + Kdm5b protein_coding retained_intron MGP_AJ_T0022218.1 MGP_AJ_G0016494.1 mouse_genomes_project 1 133095742 133100145 + Kdm5b protein_coding retained_intron MGP_AJ_T0021116.1 MGP_AJ_G0016248.1 mouse_genomes_project 1 85541268 85628840 + MGP_AJ_P0021116 Neu2 protein_coding protein_coding MGP_AJ_T0021117.1 MGP_AJ_G0016248.1 mouse_genomes_project 1 85606430 85630008 + MGP_AJ_P0021117 Neu2 protein_coding protein_coding MGP_AJ_T0021118.1 MGP_AJ_G0016248.1 mouse_genomes_project 1 85606430 85629991 + MGP_AJ_P0021118 Neu2 protein_coding protein_coding MGP_AJ_T0021119.1 MGP_AJ_G0016248.1 mouse_genomes_project 1 85606449 85628735 + MGP_AJ_P0021119 Neu2 protein_coding protein_coding MGP_AJ_T0021120.1 MGP_AJ_G0016248.1 mouse_genomes_project 1 85615803 85630015 + MGP_AJ_P0021120 Neu2 protein_coding protein_coding MGP_AJ_T0021121.1 MGP_AJ_G0016248.1 mouse_genomes_project 1 85626721 85629991 + MGP_AJ_P0021121 Neu2 protein_coding protein_coding MGP_AJ_T0021122.1 MGP_AJ_G0016248.1 mouse_genomes_project 1 85626721 85629997 + MGP_AJ_P0021122 Neu2 protein_coding protein_coding MGP_AJ_T0023110.1 MGP_AJ_G0016665.1 mouse_genomes_project 1 162815310 162951182 + MGP_AJ_P0023110 Nme7 protein_coding nonsense_mediated_decay MGP_AJ_T0023112.1 MGP_AJ_G0016665.1 mouse_genomes_project 1 162818861 162950757 + MGP_AJ_P0023112 Nme7 protein_coding protein_coding MGP_AJ_T0023113.1 MGP_AJ_G0016665.1 mouse_genomes_project 1 162818916 162861837 + Nme7 protein_coding processed_transcript MGP_AJ_T0023114.1 MGP_AJ_G0016665.1 mouse_genomes_project 1 162818937 162824305 + Nme7 protein_coding retained_intron MGP_AJ_T0023115.1 MGP_AJ_G0016665.1 mouse_genomes_project 1 162819262 162950751 + MGP_AJ_P0023115 Nme7 protein_coding protein_coding MGP_AJ_T0023116.1 MGP_AJ_G0016665.1 mouse_genomes_project 1 162819286 162846635 + Nme7 protein_coding retained_intron MGP_AJ_T0023117.1 MGP_AJ_G0016665.1 mouse_genomes_project 1 162824016 162860583 + MGP_AJ_P0023117 Nme7 protein_coding protein_coding MGP_AJ_T0023118.1 MGP_AJ_G0016665.1 mouse_genomes_project 1 162857621 162893602 + Nme7 protein_coding retained_intron MGP_AJ_T0023119.1 MGP_AJ_G0016665.1 mouse_genomes_project 1 162886012 162950693 + Nme7 protein_coding processed_transcript MGP_AJ_T0023120.1 MGP_AJ_G0016665.1 mouse_genomes_project 1 162886012 162950749 + Nme7 protein_coding processed_transcript MGP_AJ_T0006010.1 MGP_AJ_G0005035.1 mouse_genomes_project 1 180566688 180590616 + lincRNA lincRNA MGP_AJ_T0006011.1 MGP_AJ_G0005035.1 mouse_genomes_project 1 180566714 180579868 + lincRNA lincRNA MGP_AJ_T0024278.1 MGP_AJ_G0016937.1 mouse_genomes_project 1 192002867 192021767 + MGP_AJ_P0024278 Irf6 protein_coding protein_coding MGP_AJ_T0024279.1 MGP_AJ_G0016937.1 mouse_genomes_project 1 192002910 192016612 + Irf6 protein_coding retained_intron MGP_AJ_T0024280.1 MGP_AJ_G0016937.1 mouse_genomes_project 1 192006411 192013924 + Irf6 protein_coding retained_intron MGP_AJ_T0024282.1 MGP_AJ_G0016937.1 mouse_genomes_project 1 192018246 192019233 + Irf6 protein_coding retained_intron MGP_AJ_T0011240.1 MGP_AJ_G0009362.1 mouse_genomes_project 1 26757165 26757277 - Gm25586 misc_RNA misc_RNA MGP_AJ_T0011252.1 MGP_AJ_G0009374.1 mouse_genomes_project 1 87884784 87885095 + Gm26037 misc_RNA misc_RNA MGP_AJ_T0000555.1 MGP_AJ_G0000496.1 mouse_genomes_project 1 85935344 85938335 + TEC TEC MGP_AJ_T0020286.1 MGP_AJ_G0016095.1 mouse_genomes_project 1 64086029 64288634 + MGP_AJ_P0020286 protein_coding protein_coding MGP_AJ_T0020287.1 MGP_AJ_G0016095.1 mouse_genomes_project 1 64086069 64350107 + MGP_AJ_P0020287 protein_coding protein_coding MGP_AJ_T0020288.1 MGP_AJ_G0016095.1 mouse_genomes_project 1 64086072 64350654 + MGP_AJ_P0020288 protein_coding protein_coding MGP_AJ_T0020289.1 MGP_AJ_G0016095.1 mouse_genomes_project 1 64086221 64229761 + protein_coding processed_transcript MGP_AJ_T0020290.1 MGP_AJ_G0016095.1 mouse_genomes_project 1 64086300 64107633 + protein_coding processed_transcript MGP_AJ_T0020291.1 MGP_AJ_G0016095.1 mouse_genomes_project 1 64165826 64350652 + MGP_AJ_P0020291 protein_coding protein_coding MGP_AJ_T0020292.1 MGP_AJ_G0016095.1 mouse_genomes_project 1 64165841 64350652 + MGP_AJ_P0020292 protein_coding protein_coding MGP_AJ_T0020293.1 MGP_AJ_G0016095.1 mouse_genomes_project 1 64229040 64347265 + MGP_AJ_P0020293 protein_coding protein_coding MGP_AJ_T0020294.1 MGP_AJ_G0016095.1 mouse_genomes_project 1 64229157 64312055 + protein_coding retained_intron MGP_AJ_T0020295.1 MGP_AJ_G0016095.1 mouse_genomes_project 1 64229319 64289308 + protein_coding retained_intron MGP_AJ_T0020296.1 MGP_AJ_G0016095.1 mouse_genomes_project 1 64229423 64309408 + MGP_AJ_P0020296 protein_coding protein_coding MGP_AJ_T0020297.1 MGP_AJ_G0016095.1 mouse_genomes_project 1 64272729 64350654 + MGP_AJ_P0020297 protein_coding protein_coding MGP_AJ_T0020298.1 MGP_AJ_G0016095.1 mouse_genomes_project 1 64272732 64350654 + MGP_AJ_P0020298 protein_coding protein_coding MGP_AJ_T0020299.1 MGP_AJ_G0016095.1 mouse_genomes_project 1 64288528 64321462 + MGP_AJ_P0020299 protein_coding protein_coding MGP_AJ_T0020300.1 MGP_AJ_G0016095.1 mouse_genomes_project 1 64288718 64320991 + MGP_AJ_P0020300 protein_coding protein_coding MGP_AJ_T0020301.1 MGP_AJ_G0016095.1 mouse_genomes_project 1 64294958 64348033 + protein_coding processed_transcript MGP_AJ_T0020302.1 MGP_AJ_G0016095.1 mouse_genomes_project 1 64294991 64322312 + MGP_AJ_P0020302 protein_coding protein_coding MGP_AJ_T0020303.1 MGP_AJ_G0016095.1 mouse_genomes_project 1 64294998 64316339 + protein_coding processed_transcript MGP_AJ_T0020304.1 MGP_AJ_G0016095.1 mouse_genomes_project 1 64295024 64309497 + protein_coding retained_intron MGP_AJ_T0020305.1 MGP_AJ_G0016095.1 mouse_genomes_project 1 64323321 64333691 + protein_coding processed_transcript MGP_AJ_T0020306.1 MGP_AJ_G0016095.1 mouse_genomes_project 1 64324171 64346381 + MGP_AJ_P0020306 protein_coding protein_coding MGP_AJ_T0020307.1 MGP_AJ_G0016095.1 mouse_genomes_project 1 64324171 64346381 + MGP_AJ_P0020307 protein_coding protein_coding MGP_AJ_T0020308.1 MGP_AJ_G0016095.1 mouse_genomes_project 1 64324857 64346358 + MGP_AJ_P0020308 protein_coding protein_coding MGP_AJ_T0020309.1 MGP_AJ_G0016095.1 mouse_genomes_project 1 64341763 64347530 + MGP_AJ_P0020309 protein_coding protein_coding MGP_AJ_T0018743.1 MGP_AJ_G0015797.1 mouse_genomes_project 1 2204310 2294138 + MGP_AJ_P0018743 Atp6v1h protein_coding protein_coding MGP_AJ_T0018744.1 MGP_AJ_G0015797.1 mouse_genomes_project 1 2212257 2294327 + MGP_AJ_P0018744 Atp6v1h protein_coding protein_coding MGP_AJ_T0018745.1 MGP_AJ_G0015797.1 mouse_genomes_project 1 2212287 2225188 + MGP_AJ_P0018745 Atp6v1h protein_coding protein_coding MGP_AJ_T0018746.1 MGP_AJ_G0015797.1 mouse_genomes_project 1 2212301 2276730 + Atp6v1h protein_coding retained_intron MGP_AJ_T0018747.1 MGP_AJ_G0015797.1 mouse_genomes_project 1 2212309 2215954 + Atp6v1h protein_coding retained_intron MGP_AJ_T0018748.1 MGP_AJ_G0015797.1 mouse_genomes_project 1 2212309 2225119 + MGP_AJ_P0018748 Atp6v1h protein_coding protein_coding MGP_AJ_T0018749.1 MGP_AJ_G0015797.1 mouse_genomes_project 1 2212331 2294217 + MGP_AJ_P0018749 Atp6v1h protein_coding protein_coding MGP_AJ_T0018750.1 MGP_AJ_G0015797.1 mouse_genomes_project 1 2212341 2229239 + Atp6v1h protein_coding retained_intron MGP_AJ_T0021351.1 MGP_AJ_G0016300.1 mouse_genomes_project 1 90786658 90787740 + MGP_AJ_P0021351 Olfr1413 protein_coding protein_coding MGP_AJ_T0011842.1 MGP_AJ_G0009937.1 mouse_genomes_project 1 629442 630368 + processed_pseudogene processed_pseudogene MGP_AJ_T0012144.1 MGP_AJ_G0010239.1 mouse_genomes_project 1 91217942 91221318 - processed_pseudogene processed_pseudogene MGP_AJ_T0000390.1 MGP_AJ_G0000334.1 mouse_genomes_project 1 14262128 14262955 + TEC TEC MGP_AJ_T0017005.1 MGP_AJ_G0015078.1 mouse_genomes_project 1 84369769 84378229 + C130036L24Rik processed_transcript retained_intron MGP_AJ_T0017006.1 MGP_AJ_G0015078.1 mouse_genomes_project 1 84369779 84384839 + C130036L24Rik processed_transcript processed_transcript MGP_AJ_T0017007.1 MGP_AJ_G0015078.1 mouse_genomes_project 1 84369783 84372973 + C130036L24Rik processed_transcript retained_intron MGP_AJ_T0020874.1 MGP_AJ_G0016199.1 mouse_genomes_project 1 80393294 80534418 - MGP_AJ_P0020874 Col4a4 protein_coding protein_coding MGP_AJ_T0020875.1 MGP_AJ_G0016199.1 mouse_genomes_project 1 80487054 80534361 - Col4a4 protein_coding retained_intron MGP_AJ_T0003000.1 MGP_AJ_G0002807.1 mouse_genomes_project 1 190995968 191009852 + Gm10516 antisense antisense MGP_AJ_T0003001.1 MGP_AJ_G0002807.1 mouse_genomes_project 1 190996412 191004254 + Gm10516 antisense antisense MGP_AJ_T0002742.1 MGP_AJ_G0002614.1 mouse_genomes_project 1 550075 602303 + Gm1992 antisense antisense MGP_AJ_T0006000.1 MGP_AJ_G0005027.1 mouse_genomes_project 1 176366168 176371678 - Gm37280 lincRNA lincRNA MGP_AJ_T0011924.1 MGP_AJ_G0010019.1 mouse_genomes_project 1 22315065 22316263 - processed_pseudogene processed_pseudogene MGP_AJ_T0098864.1 MGP_AJ_G0036848.1 mouse_genomes_project 1 49628194 49629473 - Gm29453 sense_intronic sense_intronic MGP_AJ_T0012001.1 MGP_AJ_G0010096.1 mouse_genomes_project 1 43588080 43589256 + processed_pseudogene processed_pseudogene MGP_AJ_T0006060.1 MGP_AJ_G0005072.1 mouse_genomes_project 1 191693514 191694586 + 1700065J18Rik lincRNA lincRNA MGP_AJ_T0006061.1 MGP_AJ_G0005072.1 mouse_genomes_project 1 191693524 191694592 + 1700065J18Rik lincRNA lincRNA MGP_AJ_T0005750.1 MGP_AJ_G0004828.1 mouse_genomes_project 1 59354004 59385734 + Gm11588 lincRNA lincRNA MGP_AJ_T0009528.1 MGP_AJ_G0007650.1 mouse_genomes_project 1 117323906 117323987 + Mir6346 miRNA miRNA MGP_AJ_T0021688.1 MGP_AJ_G0016375.1 mouse_genomes_project 1 116993505 117004244 + Tfcp2l1 protein_coding processed_transcript MGP_AJ_T0021689.1 MGP_AJ_G0016375.1 mouse_genomes_project 1 116993506 117052555 + MGP_AJ_P0021689 Tfcp2l1 protein_coding protein_coding MGP_AJ_T0000775.1 MGP_AJ_G0000712.1 mouse_genomes_project 1 181607649 181609603 + TEC TEC MGP_AJ_T0000754.1 MGP_AJ_G0000693.1 mouse_genomes_project 1 175943947 175946695 - TEC TEC MGP_AJ_T0022692.1 MGP_AJ_G0016588.1 mouse_genomes_project 1 152670795 152675371 + MGP_AJ_P0022692 Zfp648 protein_coding protein_coding MGP_AJ_T0023676.1 MGP_AJ_G0016815.1 mouse_genomes_project 1 174370521 174395921 - MGP_AJ_P0023676 Fh1 protein_coding protein_coding MGP_AJ_T0023677.1 MGP_AJ_G0016815.1 mouse_genomes_project 1 174371523 174374518 - Fh1 protein_coding retained_intron MGP_AJ_T0023678.1 MGP_AJ_G0016815.1 mouse_genomes_project 1 174371525 174376882 - Fh1 protein_coding retained_intron MGP_AJ_T0023679.1 MGP_AJ_G0016815.1 mouse_genomes_project 1 174371531 174379948 - MGP_AJ_P0023679 Fh1 protein_coding protein_coding MGP_AJ_T0023680.1 MGP_AJ_G0016815.1 mouse_genomes_project 1 174385060 174395859 - MGP_AJ_P0023680 Fh1 protein_coding nonsense_mediated_decay MGP_AJ_T0098870.1 MGP_AJ_G0036854.1 mouse_genomes_project 1 72263067 72265370 + Gm29358 sense_intronic sense_intronic MGP_AJ_T0098871.1 MGP_AJ_G0036854.1 mouse_genomes_project 1 72263105 72266332 + Gm29358 sense_intronic sense_intronic MGP_AJ_T0021918.1 MGP_AJ_G0016427.1 mouse_genomes_project 1 129316559 129321940 - MGP_AJ_P0021918 Il24 protein_coding protein_coding MGP_AJ_T0021919.1 MGP_AJ_G0016427.1 mouse_genomes_project 1 129316559 129320482 - MGP_AJ_P0021919 Il24 protein_coding protein_coding MGP_AJ_T0021920.1 MGP_AJ_G0016427.1 mouse_genomes_project 1 129316940 129321825 - MGP_AJ_P0021920 Il24 protein_coding nonsense_mediated_decay MGP_AJ_T0021921.1 MGP_AJ_G0016427.1 mouse_genomes_project 1 129319272 129321899 - MGP_AJ_P0021921 Il24 protein_coding nonsense_mediated_decay MGP_AJ_T0005805.1 MGP_AJ_G0004868.1 mouse_genomes_project 1 78131374 78137980 + 9830004L10Rik lincRNA lincRNA MGP_AJ_T0005806.1 MGP_AJ_G0004868.1 mouse_genomes_project 1 78132901 78137980 + 9830004L10Rik lincRNA lincRNA MGP_AJ_T0005807.1 MGP_AJ_G0004868.1 mouse_genomes_project 1 78132923 78138025 + 9830004L10Rik lincRNA lincRNA MGP_AJ_T0022754.1 MGP_AJ_G0016599.1 mouse_genomes_project 1 154498939 154533844 - MGP_AJ_P0022754 Tor1aip1 protein_coding protein_coding MGP_AJ_T0022755.1 MGP_AJ_G0016599.1 mouse_genomes_project 1 154498954 154535448 - MGP_AJ_P0022755 Tor1aip1 protein_coding protein_coding MGP_AJ_T0022756.1 MGP_AJ_G0016599.1 mouse_genomes_project 1 154501119 154535501 - MGP_AJ_P0022756 Tor1aip1 protein_coding protein_coding MGP_AJ_T0022757.1 MGP_AJ_G0016599.1 mouse_genomes_project 1 154501869 154531979 - MGP_AJ_P0022757 Tor1aip1 protein_coding protein_coding MGP_AJ_T0022758.1 MGP_AJ_G0016599.1 mouse_genomes_project 1 154501910 154533907 - MGP_AJ_P0022758 Tor1aip1 protein_coding protein_coding MGP_AJ_T0022759.1 MGP_AJ_G0016599.1 mouse_genomes_project 1 154501910 154535501 - MGP_AJ_P0022759 Tor1aip1 protein_coding nonsense_mediated_decay MGP_AJ_T0022760.1 MGP_AJ_G0016599.1 mouse_genomes_project 1 154511834 154513159 - Tor1aip1 protein_coding retained_intron MGP_AJ_T0022761.1 MGP_AJ_G0016599.1 mouse_genomes_project 1 154512719 154535256 - MGP_AJ_P0022761 Tor1aip1 protein_coding unknown_likely_coding MGP_AJ_T0022762.1 MGP_AJ_G0016599.1 mouse_genomes_project 1 154518607 154535071 - MGP_AJ_P0022762 Tor1aip1 protein_coding nonsense_mediated_decay MGP_AJ_T0022763.1 MGP_AJ_G0016599.1 mouse_genomes_project 1 154527966 154535168 - Tor1aip1 protein_coding retained_intron MGP_AJ_T0005953.1 MGP_AJ_G0004989.1 mouse_genomes_project 1 154005990 154014195 - Gm5532 lincRNA lincRNA MGP_AJ_T0005954.1 MGP_AJ_G0004989.1 mouse_genomes_project 1 154012091 154014227 - Gm5532 lincRNA lincRNA MGP_AJ_T0012064.1 MGP_AJ_G0010159.1 mouse_genomes_project 1 59467967 59468357 + processed_pseudogene processed_pseudogene MGP_AJ_T0099141.1 MGP_AJ_G0037107.1 mouse_genomes_project 1 182209 182319 + Gm26206 snRNA snRNA MGP_AJ_T0002858.1 MGP_AJ_G0002700.1 mouse_genomes_project 1 91858404 91859720 + Gm28536 antisense antisense MGP_AJ_T0019443.1 MGP_AJ_G0015932.1 mouse_genomes_project 1 35645352 35702859 + MGP_AJ_P0019443 Eif5b protein_coding protein_coding MGP_AJ_T0019444.1 MGP_AJ_G0015932.1 mouse_genomes_project 1 35645471 35699301 + Eif5b protein_coding retained_intron MGP_AJ_T0019445.1 MGP_AJ_G0015932.1 mouse_genomes_project 1 35688838 35692516 + Eif5b protein_coding retained_intron MGP_AJ_T0019446.1 MGP_AJ_G0015932.1 mouse_genomes_project 1 35689925 35693752 + Eif5b protein_coding processed_transcript MGP_AJ_T0019447.1 MGP_AJ_G0015932.1 mouse_genomes_project 1 35691709 35695879 + Eif5b protein_coding retained_intron MGP_AJ_T0021729.1 MGP_AJ_G0016384.1 mouse_genomes_project 1 118380951 118437685 + MGP_AJ_P0021729 Sctr protein_coding protein_coding MGP_AJ_T0021730.1 MGP_AJ_G0016384.1 mouse_genomes_project 1 118381091 118437683 + MGP_AJ_P0021730 Sctr protein_coding protein_coding MGP_AJ_T0011966.1 MGP_AJ_G0010061.1 mouse_genomes_project 1 32348672 32349027 + processed_pseudogene processed_pseudogene MGP_AJ_T0022125.1 MGP_AJ_G0016473.1 mouse_genomes_project 1 132078272 132120482 - MGP_AJ_P0022125 Zbed6 protein_coding protein_coding MGP_AJ_T0021658.1 MGP_AJ_G0016374.1 mouse_genomes_project 1 116757275 116975177 + MGP_AJ_P0021658 Clasp1 protein_coding protein_coding MGP_AJ_T0021659.1 MGP_AJ_G0016374.1 mouse_genomes_project 1 116757275 116975177 + MGP_AJ_P0021659 Clasp1 protein_coding protein_coding MGP_AJ_T0021660.1 MGP_AJ_G0016374.1 mouse_genomes_project 1 116757275 116975177 + MGP_AJ_P0021660 Clasp1 protein_coding protein_coding MGP_AJ_T0021661.1 MGP_AJ_G0016374.1 mouse_genomes_project 1 116757275 116975245 + MGP_AJ_P0021661 Clasp1 protein_coding protein_coding MGP_AJ_T0021662.1 MGP_AJ_G0016374.1 mouse_genomes_project 1 116757561 116870176 + Clasp1 protein_coding retained_intron MGP_AJ_T0021663.1 MGP_AJ_G0016374.1 mouse_genomes_project 1 116757668 116972940 + MGP_AJ_P0021663 Clasp1 protein_coding nonsense_mediated_decay MGP_AJ_T0021664.1 MGP_AJ_G0016374.1 mouse_genomes_project 1 116757677 116975239 + MGP_AJ_P0021664 Clasp1 protein_coding protein_coding MGP_AJ_T0021665.1 MGP_AJ_G0016374.1 mouse_genomes_project 1 116757677 116973357 + MGP_AJ_P0021665 Clasp1 protein_coding protein_coding MGP_AJ_T0021666.1 MGP_AJ_G0016374.1 mouse_genomes_project 1 116757677 116973357 + MGP_AJ_P0021666 Clasp1 protein_coding protein_coding MGP_AJ_T0021667.1 MGP_AJ_G0016374.1 mouse_genomes_project 1 116757678 116973514 + MGP_AJ_P0021667 Clasp1 protein_coding protein_coding MGP_AJ_T0021668.1 MGP_AJ_G0016374.1 mouse_genomes_project 1 116757679 116874559 + Clasp1 protein_coding retained_intron MGP_AJ_T0021669.1 MGP_AJ_G0016374.1 mouse_genomes_project 1 116757695 116972940 + MGP_AJ_P0021669 Clasp1 protein_coding protein_coding MGP_AJ_T0021670.1 MGP_AJ_G0016374.1 mouse_genomes_project 1 116757739 116974985 + MGP_AJ_P0021670 Clasp1 protein_coding protein_coding MGP_AJ_T0021671.1 MGP_AJ_G0016374.1 mouse_genomes_project 1 116787776 116975248 + MGP_AJ_P0021671 Clasp1 protein_coding protein_coding MGP_AJ_T0021672.1 MGP_AJ_G0016374.1 mouse_genomes_project 1 116787940 116972887 + MGP_AJ_P0021672 Clasp1 protein_coding protein_coding MGP_AJ_T0021673.1 MGP_AJ_G0016374.1 mouse_genomes_project 1 116787940 116978442 + MGP_AJ_P0021673 Clasp1 protein_coding protein_coding MGP_AJ_T0021674.1 MGP_AJ_G0016374.1 mouse_genomes_project 1 116828177 116864729 + Clasp1 protein_coding retained_intron MGP_AJ_T0021675.1 MGP_AJ_G0016374.1 mouse_genomes_project 1 116838296 116972874 + Clasp1 protein_coding processed_transcript MGP_AJ_T0021676.1 MGP_AJ_G0016374.1 mouse_genomes_project 1 116838351 116870859 + Clasp1 protein_coding processed_transcript MGP_AJ_T0021677.1 MGP_AJ_G0016374.1 mouse_genomes_project 1 116839112 116868353 + Clasp1 protein_coding processed_transcript MGP_AJ_T0021678.1 MGP_AJ_G0016374.1 mouse_genomes_project 1 116840297 116871939 + MGP_AJ_P0021678 Clasp1 protein_coding nonsense_mediated_decay MGP_AJ_T0021679.1 MGP_AJ_G0016374.1 mouse_genomes_project 1 116850556 116972912 + MGP_AJ_P0021679 Clasp1 protein_coding protein_coding MGP_AJ_T0021680.1 MGP_AJ_G0016374.1 mouse_genomes_project 1 116877221 116892845 + Clasp1 protein_coding retained_intron MGP_AJ_T0021681.1 MGP_AJ_G0016374.1 mouse_genomes_project 1 116879701 116914916 + MGP_AJ_P0021681 Clasp1 protein_coding protein_coding MGP_AJ_T0021682.1 MGP_AJ_G0016374.1 mouse_genomes_project 1 116899066 116975205 + MGP_AJ_P0021682 Clasp1 protein_coding nonsense_mediated_decay MGP_AJ_T0021683.1 MGP_AJ_G0016374.1 mouse_genomes_project 1 116901753 116904478 + Clasp1 protein_coding retained_intron MGP_AJ_T0021684.1 MGP_AJ_G0016374.1 mouse_genomes_project 1 116914215 116914935 + Clasp1 protein_coding retained_intron MGP_AJ_T0021685.1 MGP_AJ_G0016374.1 mouse_genomes_project 1 116914981 116953018 + MGP_AJ_P0021685 Clasp1 protein_coding protein_coding MGP_AJ_T0021686.1 MGP_AJ_G0016374.1 mouse_genomes_project 1 116922022 116924114 + Clasp1 protein_coding retained_intron MGP_AJ_T0021687.1 MGP_AJ_G0016374.1 mouse_genomes_project 1 116970439 116975177 + Clasp1 protein_coding retained_intron MGP_AJ_T0009504.1 MGP_AJ_G0007626.1 mouse_genomes_project 1 72884517 72884581 - Mir375 miRNA miRNA MGP_AJ_T0020024.1 MGP_AJ_G0016045.1 mouse_genomes_project 1 56995292 57014012 - MGP_AJ_P0020024 Tmem237 protein_coding protein_coding MGP_AJ_T0020025.1 MGP_AJ_G0016045.1 mouse_genomes_project 1 56995299 57013724 - MGP_AJ_P0020025 Tmem237 protein_coding protein_coding MGP_AJ_T0020026.1 MGP_AJ_G0016045.1 mouse_genomes_project 1 56995613 57014295 - MGP_AJ_P0020026 Tmem237 protein_coding protein_coding MGP_AJ_T0020027.1 MGP_AJ_G0016045.1 mouse_genomes_project 1 57002335 57014025 - MGP_AJ_P0020027 Tmem237 protein_coding protein_coding MGP_AJ_T0020028.1 MGP_AJ_G0016045.1 mouse_genomes_project 1 57002924 57008231 - Tmem237 protein_coding retained_intron MGP_AJ_T0020029.1 MGP_AJ_G0016045.1 mouse_genomes_project 1 57003230 57014321 - MGP_AJ_P0020029 Tmem237 protein_coding protein_coding MGP_AJ_T0020030.1 MGP_AJ_G0016045.1 mouse_genomes_project 1 57004011 57009873 - Tmem237 protein_coding retained_intron MGP_AJ_T0002906.1 MGP_AJ_G0002734.1 mouse_genomes_project 1 145197080 145226032 - Gm15584 antisense antisense MGP_AJ_T0019791.1 MGP_AJ_G0016000.1 mouse_genomes_project 1 51059803 51077603 + MGP_AJ_P0019791 Gm28778 protein_coding protein_coding MGP_AJ_T0023728.1 MGP_AJ_G0016825.1 mouse_genomes_project 1 175587271 175722508 + Sdccag8 protein_coding retained_intron MGP_AJ_T0023729.1 MGP_AJ_G0016825.1 mouse_genomes_project 1 175587271 175618066 + Sdccag8 protein_coding retained_intron MGP_AJ_T0023730.1 MGP_AJ_G0016825.1 mouse_genomes_project 1 175587271 175629083 + MGP_AJ_P0023730 Sdccag8 protein_coding protein_coding MGP_AJ_T0023731.1 MGP_AJ_G0016825.1 mouse_genomes_project 1 175587271 175787827 + MGP_AJ_P0023731 Sdccag8 protein_coding nonsense_mediated_decay MGP_AJ_T0023732.1 MGP_AJ_G0016825.1 mouse_genomes_project 1 175587271 175787827 + MGP_AJ_P0023732 Sdccag8 protein_coding protein_coding MGP_AJ_T0023733.1 MGP_AJ_G0016825.1 mouse_genomes_project 1 175765032 175787827 + Sdccag8 protein_coding processed_transcript MGP_AJ_T0098886.1 MGP_AJ_G0036869.1 mouse_genomes_project 1 163743598 163749340 - Gm38190 sense_intronic sense_intronic MGP_AJ_T0000647.1 MGP_AJ_G0000587.1 mouse_genomes_project 1 136440823 136443844 + TEC TEC MGP_AJ_T0000648.1 MGP_AJ_G0000587.1 mouse_genomes_project 1 136441742 136443844 + TEC TEC MGP_AJ_T0000784.1 MGP_AJ_G0000721.1 mouse_genomes_project 1 185952216 185955200 - TEC TEC MGP_AJ_T0012329.1 MGP_AJ_G0010424.1 mouse_genomes_project 1 168067670 168068254 - processed_pseudogene processed_pseudogene MGP_AJ_T0012031.1 MGP_AJ_G0010126.1 mouse_genomes_project 1 51123395 51123968 + processed_pseudogene processed_pseudogene MGP_AJ_T0000375.1 MGP_AJ_G0000319.1 mouse_genomes_project 1 10517004 10519260 - TEC TEC MGP_AJ_T0017080.1 MGP_AJ_G0015098.1 mouse_genomes_project 1 169418442 169431379 + Gm9929 processed_transcript processed_transcript MGP_AJ_T0102208.1 MGP_AJ_G0039951.1 mouse_genomes_project 1 179967464 179976501 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0005891.1 MGP_AJ_G0004937.1 mouse_genomes_project 1 119593896 119597159 + Gm29359 lincRNA lincRNA MGP_AJ_T0005872.1 MGP_AJ_G0004924.1 mouse_genomes_project 1 116724823 116730940 + Gm28867 lincRNA lincRNA MGP_AJ_T0102189.1 MGP_AJ_G0039932.1 mouse_genomes_project 1 171626232 171627091 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0022123.1 MGP_AJ_G0016472.1 mouse_genomes_project 1 132078156 132120482 - MGP_AJ_P0022123 Zc3h11a protein_coding protein_coding MGP_AJ_T0022124.1 MGP_AJ_G0016472.1 mouse_genomes_project 1 132078165 132120544 - MGP_AJ_P0022124 Zc3h11a protein_coding protein_coding MGP_AJ_T0022126.1 MGP_AJ_G0016472.1 mouse_genomes_project 1 132083818 132086460 - Zc3h11a protein_coding processed_transcript MGP_AJ_T0022127.1 MGP_AJ_G0016472.1 mouse_genomes_project 1 132086357 132098360 - MGP_AJ_P0022127 Zc3h11a protein_coding protein_coding MGP_AJ_T0022128.1 MGP_AJ_G0016472.1 mouse_genomes_project 1 132098073 132120542 - MGP_AJ_P0022128 Zc3h11a protein_coding protein_coding MGP_AJ_T0022129.1 MGP_AJ_G0016472.1 mouse_genomes_project 1 132098331 132120522 - MGP_AJ_P0022129 Zc3h11a protein_coding protein_coding MGP_AJ_T0022130.1 MGP_AJ_G0016472.1 mouse_genomes_project 1 132099555 132120524 - Zc3h11a protein_coding retained_intron MGP_AJ_T0022131.1 MGP_AJ_G0016472.1 mouse_genomes_project 1 132099846 132120446 - MGP_AJ_P0022131 Zc3h11a protein_coding protein_coding MGP_AJ_T0022132.1 MGP_AJ_G0016472.1 mouse_genomes_project 1 132104969 132120460 - MGP_AJ_P0022132 Zc3h11a protein_coding protein_coding MGP_AJ_T0022133.1 MGP_AJ_G0016472.1 mouse_genomes_project 1 132106405 132120445 - Zc3h11a protein_coding retained_intron MGP_AJ_T0022134.1 MGP_AJ_G0016472.1 mouse_genomes_project 1 132106658 132120532 - Zc3h11a protein_coding processed_transcript MGP_AJ_T0022135.1 MGP_AJ_G0016472.1 mouse_genomes_project 1 132113483 132120523 - Zc3h11a protein_coding processed_transcript MGP_AJ_T0022136.1 MGP_AJ_G0016472.1 mouse_genomes_project 1 132113827 132120544 - Zc3h11a protein_coding retained_intron MGP_AJ_T0009503.1 MGP_AJ_G0007625.1 mouse_genomes_project 1 72565354 72565431 - Gm25035 miRNA miRNA MGP_AJ_T0006030.1 MGP_AJ_G0005047.1 mouse_genomes_project 1 183238713 183244893 - Gm37712 lincRNA lincRNA MGP_AJ_T0005949.1 MGP_AJ_G0004986.1 mouse_genomes_project 1 152717206 152731885 + 4930532M18Rik lincRNA lincRNA MGP_AJ_T0005950.1 MGP_AJ_G0004986.1 mouse_genomes_project 1 152718524 152731706 + 4930532M18Rik lincRNA lincRNA MGP_AJ_T0023441.1 MGP_AJ_G0016737.1 mouse_genomes_project 1 169921922 169935591 + MGP_AJ_P0023441 Pfdn2 protein_coding protein_coding MGP_AJ_T0000780.1 MGP_AJ_G0000717.1 mouse_genomes_project 1 185044871 185045359 + TEC TEC MGP_AJ_T0100449.1 MGP_AJ_G0038415.1 mouse_genomes_project 1 100480870 100481002 - Gm24122 snoRNA snoRNA MGP_AJ_T0022483.1 MGP_AJ_G0016548.1 mouse_genomes_project 1 142434213 142439009 - MGP_AJ_P0022483 Rgs2 protein_coding protein_coding MGP_AJ_T0022484.1 MGP_AJ_G0016548.1 mouse_genomes_project 1 142436555 142438983 - MGP_AJ_P0022484 Rgs2 protein_coding nonsense_mediated_decay MGP_AJ_T0022485.1 MGP_AJ_G0016548.1 mouse_genomes_project 1 142436758 142438880 - MGP_AJ_P0022485 Rgs2 protein_coding protein_coding MGP_AJ_T0022486.1 MGP_AJ_G0016548.1 mouse_genomes_project 1 142437391 142438969 - Rgs2 protein_coding retained_intron MGP_AJ_T0023644.1 MGP_AJ_G0016799.1 mouse_genomes_project 1 172794298 172795237 + MGP_AJ_P0023644 Olfr432 protein_coding protein_coding MGP_AJ_T0002877.1 MGP_AJ_G0002712.1 mouse_genomes_project 1 128894012 128993380 + antisense antisense MGP_AJ_T0000642.1 MGP_AJ_G0000582.1 mouse_genomes_project 1 135847973 135848382 - TEC TEC MGP_AJ_T0020265.1 MGP_AJ_G0016091.1 mouse_genomes_project 1 63052067 63072630 - MGP_AJ_P0020265 Idh1 protein_coding protein_coding MGP_AJ_T0020266.1 MGP_AJ_G0016091.1 mouse_genomes_project 1 63052069 63079919 - MGP_AJ_P0020266 Idh1 protein_coding protein_coding MGP_AJ_T0020267.1 MGP_AJ_G0016091.1 mouse_genomes_project 1 63059650 63079878 - MGP_AJ_P0020267 Idh1 protein_coding protein_coding MGP_AJ_T0020268.1 MGP_AJ_G0016091.1 mouse_genomes_project 1 63059695 63079940 - MGP_AJ_P0020268 Idh1 protein_coding protein_coding MGP_AJ_T0020269.1 MGP_AJ_G0016091.1 mouse_genomes_project 1 63062040 63069013 - MGP_AJ_P0020269 Idh1 protein_coding protein_coding MGP_AJ_T0020270.1 MGP_AJ_G0016091.1 mouse_genomes_project 1 63064571 63079899 - MGP_AJ_P0020270 Idh1 protein_coding protein_coding MGP_AJ_T0020271.1 MGP_AJ_G0016091.1 mouse_genomes_project 1 63068744 63079919 - MGP_AJ_P0020271 Idh1 protein_coding protein_coding MGP_AJ_T0005790.1 MGP_AJ_G0004855.1 mouse_genomes_project 1 71494051 71501481 + Gm29186 lincRNA lincRNA MGP_AJ_T0023900.1 MGP_AJ_G0016860.1 mouse_genomes_project 1 179950418 179959824 + MGP_AJ_P0023900 9130409I23Rik protein_coding protein_coding MGP_AJ_T0005862.1 MGP_AJ_G0004916.1 mouse_genomes_project 1 104508777 104527683 - Gm20753 lincRNA lincRNA MGP_AJ_T0012374.1 MGP_AJ_G0010469.1 mouse_genomes_project 1 190898670 190898902 + processed_pseudogene processed_pseudogene MGP_AJ_T0022291.1 MGP_AJ_G0016509.1 mouse_genomes_project 1 134225577 134256390 + MGP_AJ_P0022291 Csrp1 protein_coding protein_coding MGP_AJ_T0022292.1 MGP_AJ_G0016509.1 mouse_genomes_project 1 134233864 134256390 + MGP_AJ_P0022292 Csrp1 protein_coding protein_coding MGP_AJ_T0011884.1 MGP_AJ_G0009979.1 mouse_genomes_project 1 8196852 8197622 + processed_pseudogene processed_pseudogene MGP_AJ_T0102209.1 MGP_AJ_G0039952.1 mouse_genomes_project 1 180344829 180345507 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0020816.1 MGP_AJ_G0016185.1 mouse_genomes_project 1 76621256 76634655 + MGP_AJ_P0020816 Utp14b protein_coding protein_coding MGP_AJ_T0020817.1 MGP_AJ_G0016185.1 mouse_genomes_project 1 76621658 76630809 + MGP_AJ_P0020817 Utp14b protein_coding protein_coding MGP_AJ_T0000619.1 MGP_AJ_G0000560.1 mouse_genomes_project 1 128285581 128288453 + TEC TEC MGP_AJ_T0012051.1 MGP_AJ_G0010146.1 mouse_genomes_project 1 58191676 58191903 - processed_pseudogene processed_pseudogene MGP_AJ_T0000517.1 MGP_AJ_G0000458.1 mouse_genomes_project 1 72474871 72477734 - TEC TEC MGP_AJ_T0005696.1 MGP_AJ_G0004793.1 mouse_genomes_project 1 39946960 39948343 + Gm9915 lincRNA lincRNA MGP_AJ_T0005697.1 MGP_AJ_G0004793.1 mouse_genomes_project 1 39946961 39948343 + Gm9915 lincRNA lincRNA MGP_AJ_T0011982.1 MGP_AJ_G0010077.1 mouse_genomes_project 1 39895678 39896741 - processed_pseudogene processed_pseudogene MGP_AJ_T0018886.1 MGP_AJ_G0015817.1 mouse_genomes_project 1 7659428 8061113 - MGP_AJ_P0018886 Cpa6 protein_coding nonsense_mediated_decay MGP_AJ_T0018887.1 MGP_AJ_G0015817.1 mouse_genomes_project 1 7659435 8061113 - MGP_AJ_P0018887 Cpa6 protein_coding protein_coding MGP_AJ_T0018888.1 MGP_AJ_G0015817.1 mouse_genomes_project 1 7808225 7813581 - Cpa6 protein_coding retained_intron MGP_AJ_T0018889.1 MGP_AJ_G0015817.1 mouse_genomes_project 1 7931617 8061073 - Cpa6 protein_coding processed_transcript MGP_AJ_T0099172.1 MGP_AJ_G0037138.1 mouse_genomes_project 1 64344156 64344307 + Gm25411 snRNA snRNA MGP_AJ_T0019160.1 MGP_AJ_G0015884.1 mouse_genomes_project 1 29712278 30225946 + MGP_AJ_P0019160 Khdrbs2 protein_coding protein_coding MGP_AJ_T0019161.1 MGP_AJ_G0015884.1 mouse_genomes_project 1 29712293 29797584 + MGP_AJ_P0019161 Khdrbs2 protein_coding protein_coding MGP_AJ_T0019162.1 MGP_AJ_G0015884.1 mouse_genomes_project 1 29712312 29894923 + MGP_AJ_P0019162 Khdrbs2 protein_coding protein_coding MGP_AJ_T0019163.1 MGP_AJ_G0015884.1 mouse_genomes_project 1 29712451 29870998 + MGP_AJ_P0019163 Khdrbs2 protein_coding protein_coding MGP_AJ_T0019164.1 MGP_AJ_G0015884.1 mouse_genomes_project 1 29857599 29977391 + Khdrbs2 protein_coding processed_transcript MGP_AJ_T0020316.1 MGP_AJ_G0016097.1 mouse_genomes_project 1 64592441 64609097 + MGP_AJ_P0020316 Rpe protein_coding unknown_likely_coding MGP_AJ_T0020317.1 MGP_AJ_G0016097.1 mouse_genomes_project 1 64592917 64606672 + MGP_AJ_P0020317 Rpe protein_coding nonsense_mediated_decay MGP_AJ_T0020318.1 MGP_AJ_G0016097.1 mouse_genomes_project 1 64592917 64611038 + MGP_AJ_P0020318 Rpe protein_coding nonsense_mediated_decay MGP_AJ_T0020319.1 MGP_AJ_G0016097.1 mouse_genomes_project 1 64592917 64611038 + MGP_AJ_P0020319 Rpe protein_coding protein_coding MGP_AJ_T0020320.1 MGP_AJ_G0016097.1 mouse_genomes_project 1 64592917 64611038 + MGP_AJ_P0020320 Rpe protein_coding protein_coding MGP_AJ_T0020321.1 MGP_AJ_G0016097.1 mouse_genomes_project 1 64592993 64609240 + MGP_AJ_P0020321 Rpe protein_coding nonsense_mediated_decay MGP_AJ_T0005652.1 MGP_AJ_G0004755.1 mouse_genomes_project 1 10406951 10416761 + Gm29283 lincRNA lincRNA MGP_AJ_T0016973.1 MGP_AJ_G0015063.1 mouse_genomes_project 1 31768638 31781027 - Gm26788 processed_transcript antisense MGP_AJ_T0016974.1 MGP_AJ_G0015063.1 mouse_genomes_project 1 31777784 31781202 - Gm26788 processed_transcript retained_intron MGP_AJ_T0000661.1 MGP_AJ_G0000600.1 mouse_genomes_project 1 138787727 138791093 + TEC TEC MGP_AJ_T0000752.1 MGP_AJ_G0000691.1 mouse_genomes_project 1 175847313 175848614 - TEC TEC MGP_AJ_T0012336.1 MGP_AJ_G0010431.1 mouse_genomes_project 1 170655604 170655934 + processed_pseudogene processed_pseudogene MGP_AJ_T0002872.1 MGP_AJ_G0002708.1 mouse_genomes_project 1 119857660 119861568 - Gm15392 antisense antisense MGP_AJ_T0099183.1 MGP_AJ_G0037149.1 mouse_genomes_project 1 85280283 85280384 + Gm26187 snRNA snRNA MGP_AJ_T0009525.1 MGP_AJ_G0007647.1 mouse_genomes_project 1 103942221 103942303 + Gm22426 miRNA miRNA MGP_AJ_T0005786.1 MGP_AJ_G0004853.1 mouse_genomes_project 1 71370277 71398590 + D530049I02Rik lincRNA lincRNA MGP_AJ_T0020698.1 MGP_AJ_G0016167.1 mouse_genomes_project 1 73230600 73240365 - MGP_AJ_P0020698 Dnpep protein_coding protein_coding MGP_AJ_T0020699.1 MGP_AJ_G0016167.1 mouse_genomes_project 1 73230600 73240343 - MGP_AJ_P0020699 Dnpep protein_coding protein_coding MGP_AJ_T0020700.1 MGP_AJ_G0016167.1 mouse_genomes_project 1 73230644 73239699 - MGP_AJ_P0020700 Dnpep protein_coding protein_coding MGP_AJ_T0020701.1 MGP_AJ_G0016167.1 mouse_genomes_project 1 73231269 73239651 - MGP_AJ_P0020701 Dnpep protein_coding protein_coding MGP_AJ_T0020702.1 MGP_AJ_G0016167.1 mouse_genomes_project 1 73231269 73239855 - MGP_AJ_P0020702 Dnpep protein_coding protein_coding MGP_AJ_T0020703.1 MGP_AJ_G0016167.1 mouse_genomes_project 1 73231887 73236464 - Dnpep protein_coding retained_intron MGP_AJ_T0020704.1 MGP_AJ_G0016167.1 mouse_genomes_project 1 73235172 73240115 - Dnpep protein_coding retained_intron MGP_AJ_T0020705.1 MGP_AJ_G0016167.1 mouse_genomes_project 1 73237068 73239509 - MGP_AJ_P0020705 Dnpep protein_coding protein_coding MGP_AJ_T0020706.1 MGP_AJ_G0016167.1 mouse_genomes_project 1 73237071 73239727 - MGP_AJ_P0020706 Dnpep protein_coding protein_coding MGP_AJ_T0020707.1 MGP_AJ_G0016167.1 mouse_genomes_project 1 73237906 73240019 - MGP_AJ_P0020707 Dnpep protein_coding protein_coding MGP_AJ_T0020708.1 MGP_AJ_G0016167.1 mouse_genomes_project 1 73238688 73240153 - MGP_AJ_P0020708 Dnpep protein_coding protein_coding MGP_AJ_T0020709.1 MGP_AJ_G0016167.1 mouse_genomes_project 1 73239052 73240078 - Dnpep protein_coding retained_intron MGP_AJ_T0020710.1 MGP_AJ_G0016167.1 mouse_genomes_project 1 73239075 73240696 - MGP_AJ_P0020710 Dnpep protein_coding protein_coding MGP_AJ_T0020711.1 MGP_AJ_G0016167.1 mouse_genomes_project 1 73239259 73240088 - MGP_AJ_P0020711 Dnpep protein_coding protein_coding MGP_AJ_T0000501.1 MGP_AJ_G0000442.1 mouse_genomes_project 1 64687432 64688571 - TEC TEC MGP_AJ_T0000671.1 MGP_AJ_G0000610.1 mouse_genomes_project 1 147759652 147761108 - TEC TEC MGP_AJ_T0005717.1 MGP_AJ_G0004802.1 mouse_genomes_project 1 44657132 44658080 - Gm28151 lincRNA lincRNA MGP_AJ_T0005865.1 MGP_AJ_G0004919.1 mouse_genomes_project 1 106114238 106120463 + Gm15389 lincRNA lincRNA MGP_AJ_T0011858.1 MGP_AJ_G0009953.1 mouse_genomes_project 1 4074226 4074890 + processed_pseudogene processed_pseudogene MGP_AJ_T0011949.1 MGP_AJ_G0010044.1 mouse_genomes_project 1 30593903 30596036 - processed_pseudogene processed_pseudogene MGP_AJ_T0009497.1 MGP_AJ_G0007619.1 mouse_genomes_project 1 61946903 61946967 - Mir6899 miRNA miRNA MGP_AJ_T0023541.1 MGP_AJ_G0016761.1 mouse_genomes_project 1 170791960 170829037 - MGP_AJ_P0023541 Atp1a4 protein_coding protein_coding MGP_AJ_T0023542.1 MGP_AJ_G0016761.1 mouse_genomes_project 1 170817534 170824567 - Atp1a4 protein_coding processed_transcript MGP_AJ_T0000662.1 MGP_AJ_G0000601.1 mouse_genomes_project 1 139865017 139865506 + TEC TEC MGP_AJ_T0024023.1 MGP_AJ_G0016885.1 mouse_genomes_project 1 182865849 182890510 + MGP_AJ_P0024023 Dusp10 protein_coding protein_coding MGP_AJ_T0024026.1 MGP_AJ_G0016885.1 mouse_genomes_project 1 182887488 182930994 + MGP_AJ_P0024026 Dusp10 protein_coding protein_coding MGP_AJ_T0011985.1 MGP_AJ_G0010080.1 mouse_genomes_project 1 41487941 41489220 + processed_pseudogene processed_pseudogene MGP_AJ_T0023801.1 MGP_AJ_G0016843.1 mouse_genomes_project 1 178677231 178678532 + MGP_AJ_P0023801 Gm10518 protein_coding protein_coding MGP_AJ_T0020087.1 MGP_AJ_G0016055.1 mouse_genomes_project 1 57896666 57905103 - Ica1l protein_coding processed_transcript MGP_AJ_T0020088.1 MGP_AJ_G0016055.1 mouse_genomes_project 1 57903243 57959566 - MGP_AJ_P0020088 Ica1l protein_coding protein_coding MGP_AJ_T0020089.1 MGP_AJ_G0016055.1 mouse_genomes_project 1 57903250 57959601 - MGP_AJ_P0020089 Ica1l protein_coding protein_coding MGP_AJ_T0020090.1 MGP_AJ_G0016055.1 mouse_genomes_project 1 57905299 57943847 - MGP_AJ_P0020090 Ica1l protein_coding protein_coding MGP_AJ_T0020091.1 MGP_AJ_G0016055.1 mouse_genomes_project 1 57930278 57938233 - Ica1l protein_coding retained_intron MGP_AJ_T0020092.1 MGP_AJ_G0016055.1 mouse_genomes_project 1 57935814 57959663 - Ica1l protein_coding processed_transcript MGP_AJ_T0011872.1 MGP_AJ_G0009967.1 mouse_genomes_project 1 6107345 6107543 + processed_pseudogene processed_pseudogene MGP_AJ_T0005731.1 MGP_AJ_G0004813.1 mouse_genomes_project 1 50338661 50348941 - Gm28178 lincRNA lincRNA MGP_AJ_T0101672.1 MGP_AJ_G0039638.1 mouse_genomes_project 1 32024816 32025645 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0012010.1 MGP_AJ_G0010105.1 mouse_genomes_project 1 46278783 46278996 + processed_pseudogene processed_pseudogene MGP_AJ_T0021922.1 MGP_AJ_G0016428.1 mouse_genomes_project 1 129342856 129347115 - MGP_AJ_P0021922 Il20 protein_coding protein_coding MGP_AJ_T0021923.1 MGP_AJ_G0016428.1 mouse_genomes_project 1 129343286 129346890 - MGP_AJ_P0021923 Il20 protein_coding protein_coding MGP_AJ_T0002846.1 MGP_AJ_G0002688.1 mouse_genomes_project 1 84962392 85090320 - Gm28375 antisense antisense MGP_AJ_T0011927.1 MGP_AJ_G0010022.1 mouse_genomes_project 1 23016696 23017266 - processed_pseudogene processed_pseudogene MGP_AJ_T0002795.1 MGP_AJ_G0002651.1 mouse_genomes_project 1 40763859 40764727 + Gm28782 antisense antisense MGP_AJ_T0005713.1 MGP_AJ_G0004798.1 mouse_genomes_project 1 40464711 40466881 + Dalir lincRNA lincRNA MGP_AJ_T0005893.1 MGP_AJ_G0004939.1 mouse_genomes_project 1 120582396 120632312 + Gm28590 lincRNA lincRNA MGP_AJ_T0022541.1 MGP_AJ_G0016559.1 mouse_genomes_project 1 148850888 148866415 - MGP_AJ_P0022541 Prg4 protein_coding protein_coding MGP_AJ_T0022542.1 MGP_AJ_G0016559.1 mouse_genomes_project 1 148850888 148866415 - MGP_AJ_P0022542 Prg4 protein_coding protein_coding MGP_AJ_T0022543.1 MGP_AJ_G0016559.1 mouse_genomes_project 1 148850888 148866415 - MGP_AJ_P0022543 Prg4 protein_coding protein_coding MGP_AJ_T0022544.1 MGP_AJ_G0016559.1 mouse_genomes_project 1 148850888 148866415 - MGP_AJ_P0022544 Prg4 protein_coding protein_coding MGP_AJ_T0022545.1 MGP_AJ_G0016559.1 mouse_genomes_project 1 148851292 148866982 - MGP_AJ_P0022545 Prg4 protein_coding protein_coding MGP_AJ_T0022546.1 MGP_AJ_G0016559.1 mouse_genomes_project 1 148851345 148866982 - MGP_AJ_P0022546 Prg4 protein_coding protein_coding MGP_AJ_T0022547.1 MGP_AJ_G0016559.1 mouse_genomes_project 1 148856831 148866982 - MGP_AJ_P0022547 Prg4 protein_coding protein_coding MGP_AJ_T0022548.1 MGP_AJ_G0016559.1 mouse_genomes_project 1 148859025 148866982 - MGP_AJ_P0022548 Prg4 protein_coding protein_coding MGP_AJ_T0023075.1 MGP_AJ_G0016655.1 mouse_genomes_project 1 162435766 162461373 + MGP_AJ_P0023075 Scyl3 protein_coding protein_coding MGP_AJ_T0023076.1 MGP_AJ_G0016655.1 mouse_genomes_project 1 162436435 162461797 + MGP_AJ_P0023076 Scyl3 protein_coding protein_coding MGP_AJ_T0023077.1 MGP_AJ_G0016655.1 mouse_genomes_project 1 162436460 162461781 + MGP_AJ_P0023077 Scyl3 protein_coding protein_coding MGP_AJ_T0023078.1 MGP_AJ_G0016655.1 mouse_genomes_project 1 162436475 162461780 + MGP_AJ_P0023078 Scyl3 protein_coding nonsense_mediated_decay MGP_AJ_T0023079.1 MGP_AJ_G0016655.1 mouse_genomes_project 1 162447785 162461785 + MGP_AJ_P0023079 Scyl3 protein_coding protein_coding MGP_AJ_T0023080.1 MGP_AJ_G0016655.1 mouse_genomes_project 1 162450441 162451515 + Scyl3 protein_coding processed_transcript MGP_AJ_T0023082.1 MGP_AJ_G0016655.1 mouse_genomes_project 1 162457883 162460473 + Scyl3 protein_coding retained_intron MGP_AJ_T0000421.1 MGP_AJ_G0000363.1 mouse_genomes_project 1 26017257 26018771 + TEC TEC MGP_AJ_T0000592.1 MGP_AJ_G0000533.1 mouse_genomes_project 1 120912663 120913785 + TEC TEC MGP_AJ_T0000598.1 MGP_AJ_G0000539.1 mouse_genomes_project 1 121849901 121851395 - TEC TEC MGP_AJ_T0021982.1 MGP_AJ_G0016443.1 mouse_genomes_project 1 130266682 130269456 + Slc41a1 protein_coding processed_transcript MGP_AJ_T0021983.1 MGP_AJ_G0016443.1 mouse_genomes_project 1 130267166 130288006 + MGP_AJ_P0021983 Slc41a1 protein_coding protein_coding MGP_AJ_T0021984.1 MGP_AJ_G0016443.1 mouse_genomes_project 1 130281980 130285770 + Slc41a1 protein_coding retained_intron MGP_AJ_T0012045.1 MGP_AJ_G0010140.1 mouse_genomes_project 1 56462869 56470759 + processed_pseudogene processed_pseudogene MGP_AJ_T0009471.1 MGP_AJ_G0007593.1 mouse_genomes_project 1 18078708 18078781 + Mir206 miRNA miRNA MGP_AJ_T0005842.1 MGP_AJ_G0004900.1 mouse_genomes_project 1 90801007 90803267 + Gm28479 lincRNA lincRNA MGP_AJ_T0021183.1 MGP_AJ_G0016260.1 mouse_genomes_project 1 86278048 86334105 + MGP_AJ_P0021183 Ugt1a5 protein_coding protein_coding MGP_AJ_T0019159.1 MGP_AJ_G0015883.1 mouse_genomes_project 1 28813001 28814464 + MGP_AJ_P0019159 protein_coding protein_coding MGP_AJ_T0102180.1 MGP_AJ_G0039923.1 mouse_genomes_project 1 116046051 116048985 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0002803.1 MGP_AJ_G0002658.1 mouse_genomes_project 1 52484664 52539003 + 4930444A19Rik antisense antisense MGP_AJ_T0002804.1 MGP_AJ_G0002658.1 mouse_genomes_project 1 52493554 52570269 + 4930444A19Rik antisense antisense MGP_AJ_T0020238.1 MGP_AJ_G0016081.1 mouse_genomes_project 1 62625352 62632548 - MGP_AJ_P0020238 Fzd5 protein_coding protein_coding MGP_AJ_T0020239.1 MGP_AJ_G0016081.1 mouse_genomes_project 1 62629265 62632546 - MGP_AJ_P0020239 Fzd5 protein_coding protein_coding MGP_AJ_T0019557.1 MGP_AJ_G0015957.1 mouse_genomes_project 1 38498943 38551269 + MGP_AJ_P0019557 Tmem182 protein_coding protein_coding MGP_AJ_T0020468.1 MGP_AJ_G0016130.1 mouse_genomes_project 1 72255760 72271865 - MGP_AJ_P0020468 Tmbim1 protein_coding protein_coding MGP_AJ_T0020469.1 MGP_AJ_G0016130.1 mouse_genomes_project 1 72255764 72271811 - Tmbim1 protein_coding retained_intron MGP_AJ_T0020470.1 MGP_AJ_G0016130.1 mouse_genomes_project 1 72255764 72263160 - Tmbim1 protein_coding retained_intron MGP_AJ_T0020471.1 MGP_AJ_G0016130.1 mouse_genomes_project 1 72255766 72271821 - MGP_AJ_P0020471 Tmbim1 protein_coding protein_coding MGP_AJ_T0020472.1 MGP_AJ_G0016130.1 mouse_genomes_project 1 72256813 72258728 - MGP_AJ_P0020472 Tmbim1 protein_coding protein_coding MGP_AJ_T0020473.1 MGP_AJ_G0016130.1 mouse_genomes_project 1 72261062 72271675 - Tmbim1 protein_coding processed_transcript MGP_AJ_T0020474.1 MGP_AJ_G0016130.1 mouse_genomes_project 1 72261410 72273083 - MGP_AJ_P0020474 Tmbim1 protein_coding protein_coding MGP_AJ_T0020475.1 MGP_AJ_G0016130.1 mouse_genomes_project 1 72261427 72271580 - MGP_AJ_P0020475 Tmbim1 protein_coding protein_coding MGP_AJ_T0022188.1 MGP_AJ_G0016489.1 mouse_genomes_project 1 132863684 132866076 + Cyb5r1 protein_coding processed_transcript MGP_AJ_T0022189.1 MGP_AJ_G0016489.1 mouse_genomes_project 1 132863866 132869824 + MGP_AJ_P0022189 Cyb5r1 protein_coding protein_coding MGP_AJ_T0022190.1 MGP_AJ_G0016489.1 mouse_genomes_project 1 132863866 132869820 + MGP_AJ_P0022190 Cyb5r1 protein_coding nonsense_mediated_decay MGP_AJ_T0022191.1 MGP_AJ_G0016489.1 mouse_genomes_project 1 132864080 132865688 + Cyb5r1 protein_coding processed_transcript MGP_AJ_T0022192.1 MGP_AJ_G0016489.1 mouse_genomes_project 1 132864088 132865680 + Cyb5r1 protein_coding processed_transcript MGP_AJ_T0022193.1 MGP_AJ_G0016489.1 mouse_genomes_project 1 132864089 132867751 + MGP_AJ_P0022193 Cyb5r1 protein_coding protein_coding MGP_AJ_T0022194.1 MGP_AJ_G0016489.1 mouse_genomes_project 1 132864105 132866952 + Cyb5r1 protein_coding retained_intron MGP_AJ_T0022195.1 MGP_AJ_G0016489.1 mouse_genomes_project 1 132864113 132868085 + Cyb5r1 protein_coding retained_intron MGP_AJ_T0022196.1 MGP_AJ_G0016489.1 mouse_genomes_project 1 132864398 132869055 + MGP_AJ_P0022196 Cyb5r1 protein_coding nonsense_mediated_decay MGP_AJ_T0022197.1 MGP_AJ_G0016489.1 mouse_genomes_project 1 132864398 132865753 + MGP_AJ_P0022197 Cyb5r1 protein_coding nonsense_mediated_decay MGP_AJ_T0005763.1 MGP_AJ_G0004837.1 mouse_genomes_project 1 62086212 62209088 - Gm28981 lincRNA lincRNA MGP_AJ_T0023604.1 MGP_AJ_G0016782.1 mouse_genomes_project 1 171789891 171795820 - MGP_AJ_P0023604 Fcer1a protein_coding protein_coding MGP_AJ_T0023605.1 MGP_AJ_G0016782.1 mouse_genomes_project 1 171790000 171795800 - MGP_AJ_P0023605 Fcer1a protein_coding protein_coding MGP_AJ_T0012188.1 MGP_AJ_G0010283.1 mouse_genomes_project 1 109706592 109707373 + processed_pseudogene processed_pseudogene MGP_AJ_T0000679.1 MGP_AJ_G0000618.1 mouse_genomes_project 1 150724549 150724898 - TEC TEC MGP_AJ_T0020408.1 MGP_AJ_G0016115.1 mouse_genomes_project 1 70323984 70433773 - MGP_AJ_P0020408 March4 protein_coding protein_coding MGP_AJ_T0023588.1 MGP_AJ_G0016772.1 mouse_genomes_project 1 171167982 171176737 - MGP_AJ_P0023588 Slamf8 protein_coding protein_coding MGP_AJ_T0023589.1 MGP_AJ_G0016772.1 mouse_genomes_project 1 171175147 171176618 - Slamf8 protein_coding retained_intron MGP_AJ_T0023105.1 MGP_AJ_G0016663.1 mouse_genomes_project 1 162781152 162793415 + MGP_AJ_P0023105 Ccdc181 protein_coding protein_coding MGP_AJ_T0005744.1 MGP_AJ_G0004822.1 mouse_genomes_project 1 57385391 57389515 - Gm26813 lincRNA lincRNA MGP_AJ_T0018786.1 MGP_AJ_G0015803.1 mouse_genomes_project 1 4261427 4347879 + MGP_AJ_P0018786 Pcmtd1 protein_coding protein_coding MGP_AJ_T0018787.1 MGP_AJ_G0015803.1 mouse_genomes_project 1 4261483 4335058 + Pcmtd1 protein_coding processed_transcript MGP_AJ_T0018788.1 MGP_AJ_G0015803.1 mouse_genomes_project 1 4261545 4346371 + Pcmtd1 protein_coding processed_transcript MGP_AJ_T0018789.1 MGP_AJ_G0015803.1 mouse_genomes_project 1 4321547 4344325 + MGP_AJ_P0018789 Pcmtd1 protein_coding nonsense_mediated_decay MGP_AJ_T0018790.1 MGP_AJ_G0015803.1 mouse_genomes_project 1 4328906 4337527 + Pcmtd1 protein_coding retained_intron MGP_AJ_T0018791.1 MGP_AJ_G0015803.1 mouse_genomes_project 1 4334240 4346867 + Pcmtd1 protein_coding retained_intron MGP_AJ_T0018792.1 MGP_AJ_G0015803.1 mouse_genomes_project 1 4334712 4346908 + Pcmtd1 protein_coding retained_intron MGP_AJ_T0005928.1 MGP_AJ_G0004969.1 mouse_genomes_project 1 137144792 137182014 - Gm5833 lincRNA lincRNA MGP_AJ_T0005929.1 MGP_AJ_G0004969.1 mouse_genomes_project 1 137171350 137182002 - Gm5833 lincRNA lincRNA MGP_AJ_T0022087.1 MGP_AJ_G0016463.1 mouse_genomes_project 1 131583398 131594673 + MGP_AJ_P0022087 Ppp1r15b protein_coding protein_coding MGP_AJ_T0022088.1 MGP_AJ_G0016463.1 mouse_genomes_project 1 131583599 131594673 + Ppp1r15b protein_coding processed_transcript MGP_AJ_T0002848.1 MGP_AJ_G0002690.1 mouse_genomes_project 1 85889857 85890809 - Gm19582 antisense antisense MGP_AJ_T0000373.1 MGP_AJ_G0000317.1 mouse_genomes_project 1 9038556 9040681 + TEC TEC MGP_AJ_T0005678.1 MGP_AJ_G0004779.1 mouse_genomes_project 1 33396561 33399512 + Gm28415 lincRNA lincRNA MGP_AJ_T0011856.1 MGP_AJ_G0009951.1 mouse_genomes_project 1 3528276 3528902 + processed_pseudogene processed_pseudogene MGP_AJ_T0005700.1 MGP_AJ_G0004796.1 mouse_genomes_project 1 40043484 40068066 - Gm28140 lincRNA lincRNA MGP_AJ_T0005674.1 MGP_AJ_G0004776.1 mouse_genomes_project 1 32029989 32036252 - Gm37233 lincRNA lincRNA MGP_AJ_T0012313.1 MGP_AJ_G0010408.1 mouse_genomes_project 1 162233447 162234489 + processed_pseudogene processed_pseudogene MGP_AJ_T0022900.1 MGP_AJ_G0016622.1 mouse_genomes_project 1 158675877 158680482 + MGP_AJ_P0022900 Mrps14 protein_coding nonsense_mediated_decay MGP_AJ_T0022901.1 MGP_AJ_G0016622.1 mouse_genomes_project 1 158675877 158682832 + MGP_AJ_P0022901 Mrps14 protein_coding protein_coding MGP_AJ_T0022902.1 MGP_AJ_G0016622.1 mouse_genomes_project 1 158675965 158680474 + MGP_AJ_P0022902 Mrps14 protein_coding protein_coding MGP_AJ_T0024024.1 MGP_AJ_G0016886.1 mouse_genomes_project 1 182886137 182887409 - 1700056E22Rik protein_coding antisense MGP_AJ_T0024025.1 MGP_AJ_G0016886.1 mouse_genomes_project 1 182886139 182887106 - MGP_AJ_P0024025 1700056E22Rik protein_coding protein_coding MGP_AJ_T0021744.1 MGP_AJ_G0016388.1 mouse_genomes_project 1 118569030 118644557 - MGP_AJ_P0021744 Steap3 protein_coding protein_coding MGP_AJ_T0021745.1 MGP_AJ_G0016388.1 mouse_genomes_project 1 118603537 118650385 - MGP_AJ_P0021745 Steap3 protein_coding protein_coding MGP_AJ_T0021746.1 MGP_AJ_G0016388.1 mouse_genomes_project 1 118605799 118649724 - MGP_AJ_P0021746 Steap3 protein_coding protein_coding MGP_AJ_T0021747.1 MGP_AJ_G0016388.1 mouse_genomes_project 1 118606813 118649531 - MGP_AJ_P0021747 Steap3 protein_coding protein_coding MGP_AJ_T0012129.1 MGP_AJ_G0010224.1 mouse_genomes_project 1 84333156 84333486 + processed_pseudogene processed_pseudogene MGP_AJ_T0020869.1 MGP_AJ_G0016196.1 mouse_genomes_project 1 80181998 80246727 - MGP_AJ_P0020869 Irs1 protein_coding protein_coding MGP_AJ_T0006006.1 MGP_AJ_G0005032.1 mouse_genomes_project 1 179685595 179694167 + Gm17275 lincRNA lincRNA MGP_AJ_T0100440.1 MGP_AJ_G0038406.1 mouse_genomes_project 1 81890802 81890926 + Gm24555 snoRNA snoRNA MGP_AJ_T0000690.1 MGP_AJ_G0000629.1 mouse_genomes_project 1 154920645 154923238 + TEC TEC MGP_AJ_T0000789.1 MGP_AJ_G0000726.1 mouse_genomes_project 1 188512444 188513329 - TEC TEC MGP_AJ_T0019182.1 MGP_AJ_G0015888.1 mouse_genomes_project 1 31359960 31413446 - MGP_AJ_P0019182 Zfp451 protein_coding nonsense_mediated_decay MGP_AJ_T0019183.1 MGP_AJ_G0015888.1 mouse_genomes_project 1 31359960 31413588 - MGP_AJ_P0019183 Zfp451 protein_coding protein_coding MGP_AJ_T0019184.1 MGP_AJ_G0015888.1 mouse_genomes_project 1 31376631 31404458 - MGP_AJ_P0019184 Zfp451 protein_coding protein_coding MGP_AJ_T0019185.1 MGP_AJ_G0015888.1 mouse_genomes_project 1 31378148 31383030 - MGP_AJ_P0019185 Zfp451 protein_coding nonsense_mediated_decay MGP_AJ_T0019186.1 MGP_AJ_G0015888.1 mouse_genomes_project 1 31378281 31413487 - MGP_AJ_P0019186 Zfp451 protein_coding protein_coding MGP_AJ_T0019187.1 MGP_AJ_G0015888.1 mouse_genomes_project 1 31381270 31413272 - Zfp451 protein_coding processed_transcript MGP_AJ_T0019188.1 MGP_AJ_G0015888.1 mouse_genomes_project 1 31385534 31399833 - Zfp451 protein_coding processed_transcript MGP_AJ_T0019189.1 MGP_AJ_G0015888.1 mouse_genomes_project 1 31391202 31413631 - MGP_AJ_P0019189 Zfp451 protein_coding protein_coding MGP_AJ_T0019190.1 MGP_AJ_G0015888.1 mouse_genomes_project 1 31412587 31413656 - Zfp451 protein_coding retained_intron MGP_AJ_T0024334.1 MGP_AJ_G0016946.1 mouse_genomes_project 1 193915468 193963431 - MGP_AJ_P0024334 Cd46 protein_coding protein_coding MGP_AJ_T0024335.1 MGP_AJ_G0016946.1 mouse_genomes_project 1 193920477 193938842 - Cd46 protein_coding retained_intron MGP_AJ_T0024336.1 MGP_AJ_G0016946.1 mouse_genomes_project 1 193920542 193963407 - MGP_AJ_P0024336 Cd46 protein_coding nonsense_mediated_decay MGP_AJ_T0024337.1 MGP_AJ_G0016946.1 mouse_genomes_project 1 193920565 193953234 - Cd46 protein_coding retained_intron MGP_AJ_T0021504.1 MGP_AJ_G0016334.1 mouse_genomes_project 1 92254664 92280439 + MGP_AJ_P0021504 protein_coding protein_coding MGP_AJ_T0000388.1 MGP_AJ_G0000332.1 mouse_genomes_project 1 13527423 13529744 - TEC TEC MGP_AJ_T0000615.1 MGP_AJ_G0000556.1 mouse_genomes_project 1 127721636 127722595 + TEC TEC MGP_AJ_T0023475.1 MGP_AJ_G0016747.1 mouse_genomes_project 1 170203326 170217368 - MGP_AJ_P0023475 Slamf7 protein_coding protein_coding MGP_AJ_T0023476.1 MGP_AJ_G0016747.1 mouse_genomes_project 1 170204120 170217448 - MGP_AJ_P0023476 Slamf7 protein_coding protein_coding MGP_AJ_T0023477.1 MGP_AJ_G0016747.1 mouse_genomes_project 1 170204633 170217368 - MGP_AJ_P0023477 Slamf7 protein_coding protein_coding MGP_AJ_T0000364.1 MGP_AJ_G0000308.1 mouse_genomes_project 1 6489667 6490694 - TEC TEC MGP_AJ_T0023757.1 MGP_AJ_G0016833.1 mouse_genomes_project 1 177184761 177198114 - MGP_AJ_P0023757 Hnrnpu protein_coding protein_coding MGP_AJ_T0023758.1 MGP_AJ_G0016833.1 mouse_genomes_project 1 177185250 177190738 - Hnrnpu protein_coding retained_intron MGP_AJ_T0023759.1 MGP_AJ_G0016833.1 mouse_genomes_project 1 177192288 177193349 - Hnrnpu protein_coding retained_intron MGP_AJ_T0023760.1 MGP_AJ_G0016833.1 mouse_genomes_project 1 177192525 177194860 - Hnrnpu protein_coding processed_transcript MGP_AJ_T0023761.1 MGP_AJ_G0016833.1 mouse_genomes_project 1 177195958 177196724 - Hnrnpu protein_coding retained_intron MGP_AJ_T0012211.1 MGP_AJ_G0010306.1 mouse_genomes_project 1 118167221 118167931 + processed_pseudogene processed_pseudogene MGP_AJ_T0012002.1 MGP_AJ_G0010097.1 mouse_genomes_project 1 43660849 43661314 + processed_pseudogene processed_pseudogene MGP_AJ_T0019328.1 MGP_AJ_G0015913.1 mouse_genomes_project 1 34161039 34283555 - MGP_AJ_P0019328 Fam178b protein_coding protein_coding MGP_AJ_T0019329.1 MGP_AJ_G0015913.1 mouse_genomes_project 1 34161043 34192424 - Fam178b protein_coding processed_transcript MGP_AJ_T0019330.1 MGP_AJ_G0015913.1 mouse_genomes_project 1 34161043 34188412 - Fam178b protein_coding processed_transcript MGP_AJ_T0019331.1 MGP_AJ_G0015913.1 mouse_genomes_project 1 34161043 34200374 - MGP_AJ_P0019331 Fam178b protein_coding nonsense_mediated_decay MGP_AJ_T0019332.1 MGP_AJ_G0015913.1 mouse_genomes_project 1 34162675 34200917 - MGP_AJ_P0019332 Fam178b protein_coding nonsense_mediated_decay MGP_AJ_T0019333.1 MGP_AJ_G0015913.1 mouse_genomes_project 1 34163211 34186785 - Fam178b protein_coding processed_transcript MGP_AJ_T0019334.1 MGP_AJ_G0015913.1 mouse_genomes_project 1 34174738 34200395 - Fam178b protein_coding processed_transcript MGP_AJ_T0019335.1 MGP_AJ_G0015913.1 mouse_genomes_project 1 34199938 34283555 - MGP_AJ_P0019335 Fam178b protein_coding protein_coding MGP_AJ_T0012358.1 MGP_AJ_G0010453.1 mouse_genomes_project 1 182261685 182262077 + processed_pseudogene processed_pseudogene MGP_AJ_T0012361.1 MGP_AJ_G0010456.1 mouse_genomes_project 1 183498932 183499412 + processed_pseudogene processed_pseudogene MGP_AJ_T0009490.1 MGP_AJ_G0007612.1 mouse_genomes_project 1 51652169 51652241 + Mir7681 miRNA miRNA MGP_AJ_T0020637.1 MGP_AJ_G0016160.1 mouse_genomes_project 1 73120857 73121730 - Glb1l protein_coding processed_transcript MGP_AJ_T0020638.1 MGP_AJ_G0016160.1 mouse_genomes_project 1 73120864 73133498 - MGP_AJ_P0020638 Glb1l protein_coding nonsense_mediated_decay MGP_AJ_T0020639.1 MGP_AJ_G0016160.1 mouse_genomes_project 1 73121712 73123790 - Glb1l protein_coding retained_intron MGP_AJ_T0020640.1 MGP_AJ_G0016160.1 mouse_genomes_project 1 73121968 73133498 - MGP_AJ_P0020640 Glb1l protein_coding protein_coding MGP_AJ_T0020641.1 MGP_AJ_G0016160.1 mouse_genomes_project 1 73122112 73132143 - MGP_AJ_P0020641 Glb1l protein_coding protein_coding MGP_AJ_T0020642.1 MGP_AJ_G0016160.1 mouse_genomes_project 1 73122112 73125508 - MGP_AJ_P0020642 Glb1l protein_coding nonsense_mediated_decay MGP_AJ_T0020643.1 MGP_AJ_G0016160.1 mouse_genomes_project 1 73122450 73132214 - Glb1l protein_coding retained_intron MGP_AJ_T0020644.1 MGP_AJ_G0016160.1 mouse_genomes_project 1 73122714 73123866 - Glb1l protein_coding retained_intron MGP_AJ_T0020645.1 MGP_AJ_G0016160.1 mouse_genomes_project 1 73123569 73124913 - Glb1l protein_coding retained_intron MGP_AJ_T0020646.1 MGP_AJ_G0016160.1 mouse_genomes_project 1 73123823 73124441 - Glb1l protein_coding retained_intron MGP_AJ_T0020647.1 MGP_AJ_G0016160.1 mouse_genomes_project 1 73125336 73133533 - MGP_AJ_P0020647 Glb1l protein_coding protein_coding MGP_AJ_T0020648.1 MGP_AJ_G0016160.1 mouse_genomes_project 1 73130751 73133473 - Glb1l protein_coding retained_intron MGP_AJ_T0099168.1 MGP_AJ_G0037134.1 mouse_genomes_project 1 59386699 59386802 + Gm25839 snRNA snRNA MGP_AJ_T0005927.1 MGP_AJ_G0004968.1 mouse_genomes_project 1 136699377 136701868 - Gm28556 lincRNA lincRNA MGP_AJ_T0000730.1 MGP_AJ_G0000669.1 mouse_genomes_project 1 164374889 164375451 - TEC TEC MGP_AJ_T0022584.1 MGP_AJ_G0016565.1 mouse_genomes_project 1 149998327 150076327 + MGP_AJ_P0022584 Fam129a protein_coding protein_coding MGP_AJ_T0022585.1 MGP_AJ_G0016565.1 mouse_genomes_project 1 149998514 150153753 + MGP_AJ_P0022585 Fam129a protein_coding protein_coding MGP_AJ_T0022586.1 MGP_AJ_G0016565.1 mouse_genomes_project 1 149998593 150151156 + MGP_AJ_P0022586 Fam129a protein_coding nonsense_mediated_decay MGP_AJ_T0022587.1 MGP_AJ_G0016565.1 mouse_genomes_project 1 149998637 150122002 + MGP_AJ_P0022587 Fam129a protein_coding protein_coding MGP_AJ_T0022588.1 MGP_AJ_G0016565.1 mouse_genomes_project 1 150108519 150151156 + Fam129a protein_coding processed_transcript MGP_AJ_T0005918.1 MGP_AJ_G0004963.1 mouse_genomes_project 1 135182616 135201991 + Gm19705 lincRNA lincRNA MGP_AJ_T0005919.1 MGP_AJ_G0004963.1 mouse_genomes_project 1 135188308 135194563 + Gm19705 lincRNA lincRNA MGP_AJ_T0005920.1 MGP_AJ_G0004963.1 mouse_genomes_project 1 135195231 135204438 + Gm19705 lincRNA lincRNA MGP_AJ_T0005921.1 MGP_AJ_G0004963.1 mouse_genomes_project 1 135195464 135204436 + Gm19705 lincRNA lincRNA MGP_AJ_T0012185.1 MGP_AJ_G0010280.1 mouse_genomes_project 1 108710878 108711416 - processed_pseudogene processed_pseudogene MGP_AJ_T0021827.1 MGP_AJ_G0016406.1 mouse_genomes_project 1 126153589 126181779 - MGP_AJ_P0021827 Map3k19 protein_coding protein_coding MGP_AJ_T0021828.1 MGP_AJ_G0016406.1 mouse_genomes_project 1 126153598 126181779 - MGP_AJ_P0021828 Map3k19 protein_coding protein_coding MGP_AJ_T0021829.1 MGP_AJ_G0016406.1 mouse_genomes_project 1 126153598 126181779 - MGP_AJ_P0021829 Map3k19 protein_coding protein_coding MGP_AJ_T0021830.1 MGP_AJ_G0016406.1 mouse_genomes_project 1 126153607 126192274 - MGP_AJ_P0021830 Map3k19 protein_coding unknown_likely_coding MGP_AJ_T0021831.1 MGP_AJ_G0016406.1 mouse_genomes_project 1 126153607 126181779 - MGP_AJ_P0021831 Map3k19 protein_coding protein_coding MGP_AJ_T0098868.1 MGP_AJ_G0036852.1 mouse_genomes_project 1 67495735 67499222 - Gm29112 sense_intronic sense_intronic MGP_AJ_T0000673.1 MGP_AJ_G0000612.1 mouse_genomes_project 1 147786534 147788569 - TEC TEC MGP_AJ_T0019168.1 MGP_AJ_G0015886.1 mouse_genomes_project 1 31318015 31321956 + Rab23 protein_coding processed_transcript MGP_AJ_T0019169.1 MGP_AJ_G0015886.1 mouse_genomes_project 1 31318015 31325010 + Rab23 protein_coding retained_intron MGP_AJ_T0019170.1 MGP_AJ_G0015886.1 mouse_genomes_project 1 31318023 31340571 + MGP_AJ_P0019170 Rab23 protein_coding protein_coding MGP_AJ_T0019171.1 MGP_AJ_G0015886.1 mouse_genomes_project 1 31318037 31340564 + MGP_AJ_P0019171 Rab23 protein_coding nonsense_mediated_decay MGP_AJ_T0019172.1 MGP_AJ_G0015886.1 mouse_genomes_project 1 31318038 31323595 + Rab23 protein_coding retained_intron MGP_AJ_T0019173.1 MGP_AJ_G0015886.1 mouse_genomes_project 1 31318266 31333437 + Rab23 protein_coding retained_intron MGP_AJ_T0019174.1 MGP_AJ_G0015886.1 mouse_genomes_project 1 31318535 31340568 + MGP_AJ_P0019174 Rab23 protein_coding protein_coding MGP_AJ_T0019175.1 MGP_AJ_G0015886.1 mouse_genomes_project 1 31332610 31338718 + Rab23 protein_coding retained_intron MGP_AJ_T0019176.1 MGP_AJ_G0015886.1 mouse_genomes_project 1 31334665 31337377 + Rab23 protein_coding retained_intron MGP_AJ_T0019177.1 MGP_AJ_G0015886.1 mouse_genomes_project 1 31336143 31338779 + Rab23 protein_coding retained_intron MGP_AJ_T0005724.1 MGP_AJ_G0004808.1 mouse_genomes_project 1 48979904 48982406 + Gm29325 lincRNA lincRNA MGP_AJ_T0012368.1 MGP_AJ_G0010463.1 mouse_genomes_project 1 188704633 188704895 + processed_pseudogene processed_pseudogene MGP_AJ_T0002843.1 MGP_AJ_G0002685.1 mouse_genomes_project 1 83935493 83939587 - Gm28884 antisense antisense MGP_AJ_T0022597.1 MGP_AJ_G0016568.1 mouse_genomes_project 1 150798741 150814576 - MGP_AJ_P0022597 Tsen15 protein_coding protein_coding MGP_AJ_T0022598.1 MGP_AJ_G0016568.1 mouse_genomes_project 1 150798844 150800089 - Tsen15 protein_coding retained_intron MGP_AJ_T0022599.1 MGP_AJ_G0016568.1 mouse_genomes_project 1 150799211 150814486 - MGP_AJ_P0022599 Tsen15 protein_coding protein_coding MGP_AJ_T0022600.1 MGP_AJ_G0016568.1 mouse_genomes_project 1 150799218 150811593 - Tsen15 protein_coding retained_intron MGP_AJ_T0022601.1 MGP_AJ_G0016568.1 mouse_genomes_project 1 150799781 150811940 - Tsen15 protein_coding retained_intron MGP_AJ_T0022602.1 MGP_AJ_G0016568.1 mouse_genomes_project 1 150811192 150814582 - Tsen15 protein_coding processed_transcript MGP_AJ_T0022603.1 MGP_AJ_G0016568.1 mouse_genomes_project 1 150812050 150814514 - Tsen15 protein_coding retained_intron MGP_AJ_T0002753.1 MGP_AJ_G0002619.1 mouse_genomes_project 1 10709902 10721704 + Gm29570 antisense antisense MGP_AJ_T0024185.1 MGP_AJ_G0016917.1 mouse_genomes_project 1 189968461 189980648 + MGP_AJ_P0024185 Nsl1 protein_coding protein_coding MGP_AJ_T0024186.1 MGP_AJ_G0016917.1 mouse_genomes_project 1 189968473 189982381 + MGP_AJ_P0024186 Nsl1 protein_coding protein_coding MGP_AJ_T0024187.1 MGP_AJ_G0016917.1 mouse_genomes_project 1 189968480 189991864 + MGP_AJ_P0024187 Nsl1 protein_coding protein_coding MGP_AJ_T0019779.1 MGP_AJ_G0015997.1 mouse_genomes_project 1 50918373 50947688 - MGP_AJ_P0019779 1700019A02Rik protein_coding protein_coding MGP_AJ_T0019780.1 MGP_AJ_G0015997.1 mouse_genomes_project 1 50918396 50947660 - MGP_AJ_P0019780 1700019A02Rik protein_coding protein_coding MGP_AJ_T0000762.1 MGP_AJ_G0000700.1 mouse_genomes_project 1 179232558 179239878 + TEC TEC MGP_AJ_T0000456.1 MGP_AJ_G0000397.1 mouse_genomes_project 1 40199237 40203086 + TEC TEC MGP_AJ_T0012049.1 MGP_AJ_G0010144.1 mouse_genomes_project 1 57863655 57865717 - processed_pseudogene processed_pseudogene MGP_AJ_T0023373.1 MGP_AJ_G0016727.1 mouse_genomes_project 1 169806489 169807817 + MGP_AJ_P0023373 Apoa2 protein_coding protein_coding MGP_AJ_T0023374.1 MGP_AJ_G0016727.1 mouse_genomes_project 1 169806517 169807816 + MGP_AJ_P0023374 Apoa2 protein_coding protein_coding MGP_AJ_T0023375.1 MGP_AJ_G0016727.1 mouse_genomes_project 1 169806519 169807811 + MGP_AJ_P0023375 Apoa2 protein_coding protein_coding MGP_AJ_T0023376.1 MGP_AJ_G0016727.1 mouse_genomes_project 1 169806526 169807775 + MGP_AJ_P0023376 Apoa2 protein_coding protein_coding MGP_AJ_T0011845.1 MGP_AJ_G0009940.1 mouse_genomes_project 1 1643654 1644104 - processed_pseudogene processed_pseudogene MGP_AJ_T0023442.1 MGP_AJ_G0016738.1 mouse_genomes_project 1 169934782 169937131 - MGP_AJ_P0023442 Klhdc9 protein_coding protein_coding MGP_AJ_T0021602.1 MGP_AJ_G0016357.1 mouse_genomes_project 1 105126728 105159392 - MGP_AJ_P0021602 Vps4b protein_coding protein_coding MGP_AJ_T0021603.1 MGP_AJ_G0016357.1 mouse_genomes_project 1 105132099 105159453 - MGP_AJ_P0021603 Vps4b protein_coding protein_coding MGP_AJ_T0021604.1 MGP_AJ_G0016357.1 mouse_genomes_project 1 105139967 105145460 - Vps4b protein_coding retained_intron MGP_AJ_T0021605.1 MGP_AJ_G0016357.1 mouse_genomes_project 1 105142110 105143290 - Vps4b protein_coding retained_intron MGP_AJ_T0021606.1 MGP_AJ_G0016357.1 mouse_genomes_project 1 105148467 105152612 - Vps4b protein_coding processed_transcript MGP_AJ_T0021607.1 MGP_AJ_G0016357.1 mouse_genomes_project 1 105153762 105159302 - Vps4b protein_coding retained_intron MGP_AJ_T0023247.1 MGP_AJ_G0016692.1 mouse_genomes_project 1 165816498 165839697 + MGP_AJ_P0023247 Tmco1 protein_coding protein_coding MGP_AJ_T0023248.1 MGP_AJ_G0016692.1 mouse_genomes_project 1 165816790 165839697 + MGP_AJ_P0023248 Tmco1 protein_coding protein_coding MGP_AJ_T0023249.1 MGP_AJ_G0016692.1 mouse_genomes_project 1 165816856 165842860 + MGP_AJ_P0023249 Tmco1 protein_coding nonsense_mediated_decay MGP_AJ_T0023250.1 MGP_AJ_G0016692.1 mouse_genomes_project 1 165822904 165839512 + MGP_AJ_P0023250 Tmco1 protein_coding protein_coding MGP_AJ_T0102187.1 MGP_AJ_G0039930.1 mouse_genomes_project 1 159662982 159720800 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0012200.1 MGP_AJ_G0010295.1 mouse_genomes_project 1 113536929 113537503 - processed_pseudogene processed_pseudogene MGP_AJ_T0023106.1 MGP_AJ_G0016664.1 mouse_genomes_project 1 162795367 162818674 - MGP_AJ_P0023106 Blzf1 protein_coding protein_coding MGP_AJ_T0023107.1 MGP_AJ_G0016664.1 mouse_genomes_project 1 162796956 162818679 - MGP_AJ_P0023107 Blzf1 protein_coding protein_coding MGP_AJ_T0023108.1 MGP_AJ_G0016664.1 mouse_genomes_project 1 162797697 162818679 - MGP_AJ_P0023108 Blzf1 protein_coding protein_coding MGP_AJ_T0023109.1 MGP_AJ_G0016664.1 mouse_genomes_project 1 162810730 162818462 - Blzf1 protein_coding processed_transcript MGP_AJ_T0023111.1 MGP_AJ_G0016664.1 mouse_genomes_project 1 162816391 162818661 - Blzf1 protein_coding retained_intron MGP_AJ_T0022657.1 MGP_AJ_G0016580.1 mouse_genomes_project 1 151948571 151994439 - MGP_AJ_P0022657 Npl protein_coding protein_coding MGP_AJ_T0022658.1 MGP_AJ_G0016580.1 mouse_genomes_project 1 151992815 151994105 - Npl protein_coding retained_intron MGP_AJ_T0023466.1 MGP_AJ_G0016744.1 mouse_genomes_project 1 170071764 170073032 + MGP_AJ_P0023466 Alyref2 protein_coding protein_coding MGP_AJ_T0011939.1 MGP_AJ_G0010034.1 mouse_genomes_project 1 28308689 28309017 - processed_pseudogene processed_pseudogene MGP_AJ_T0020422.1 MGP_AJ_G0016120.1 mouse_genomes_project 1 70810043 70828159 - MGP_AJ_P0020422 Igfbp5 protein_coding protein_coding MGP_AJ_T0020423.1 MGP_AJ_G0016120.1 mouse_genomes_project 1 70810176 70827537 - Igfbp5 protein_coding processed_transcript MGP_AJ_T0012061.1 MGP_AJ_G0010156.1 mouse_genomes_project 1 58993576 58994128 + processed_pseudogene processed_pseudogene MGP_AJ_T0000548.1 MGP_AJ_G0000489.1 mouse_genomes_project 1 84857148 84860244 + TEC TEC MGP_AJ_T0102145.1 MGP_AJ_G0015876.1 mouse_genomes_project 1 28283603 28285408 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0012319.1 MGP_AJ_G0010414.1 mouse_genomes_project 1 164152651 164153441 - processed_pseudogene processed_pseudogene MGP_AJ_T0100445.1 MGP_AJ_G0038411.1 mouse_genomes_project 1 92854357 92854426 - Gm23389 snoRNA snoRNA MGP_AJ_T0099216.1 MGP_AJ_G0037182.1 mouse_genomes_project 1 150286027 150286160 - Gm25279 snRNA snRNA MGP_AJ_T0006049.1 MGP_AJ_G0005062.1 mouse_genomes_project 1 187114831 187126570 + Gm38064 lincRNA lincRNA MGP_AJ_T0099215.1 MGP_AJ_G0037181.1 mouse_genomes_project 1 149679009 149679100 - Gm24402 snRNA snRNA MGP_AJ_T0009570.1 MGP_AJ_G0007692.1 mouse_genomes_project 1 193916189 193916277 + Mir29c miRNA miRNA MGP_AJ_T0011999.1 MGP_AJ_G0010094.1 mouse_genomes_project 1 43452685 43453866 + processed_pseudogene processed_pseudogene MGP_AJ_T0005816.1 MGP_AJ_G0004875.1 mouse_genomes_project 1 83766338 83776438 + 9930111H07Rik lincRNA lincRNA MGP_AJ_T0023298.1 MGP_AJ_G0016706.1 mouse_genomes_project 1 168693268 168714802 - MGP_AJ_P0023298 Uhmk1 protein_coding protein_coding MGP_AJ_T0023299.1 MGP_AJ_G0016706.1 mouse_genomes_project 1 168699707 168715308 - MGP_AJ_P0023299 Uhmk1 protein_coding protein_coding MGP_AJ_T0023324.1 MGP_AJ_G0016717.1 mouse_genomes_project 1 169468237 169477658 - MGP_AJ_P0023324 Fcrla protein_coding protein_coding MGP_AJ_T0023325.1 MGP_AJ_G0016717.1 mouse_genomes_project 1 169468536 169472510 - MGP_AJ_P0023325 Fcrla protein_coding nonsense_mediated_decay MGP_AJ_T0023326.1 MGP_AJ_G0016717.1 mouse_genomes_project 1 169468543 169477658 - MGP_AJ_P0023326 Fcrla protein_coding protein_coding MGP_AJ_T0023327.1 MGP_AJ_G0016717.1 mouse_genomes_project 1 169471025 169477630 - MGP_AJ_P0023327 Fcrla protein_coding protein_coding MGP_AJ_T0023328.1 MGP_AJ_G0016717.1 mouse_genomes_project 1 169471738 169477635 - MGP_AJ_P0023328 Fcrla protein_coding protein_coding MGP_AJ_T0023329.1 MGP_AJ_G0016717.1 mouse_genomes_project 1 169471758 169477609 - Fcrla protein_coding processed_transcript MGP_AJ_T0020745.1 MGP_AJ_G0016172.1 mouse_genomes_project 1 73398640 73403357 - MGP_AJ_P0020745 Chpf protein_coding protein_coding MGP_AJ_T0020746.1 MGP_AJ_G0016172.1 mouse_genomes_project 1 73398646 73403393 - MGP_AJ_P0020746 Chpf protein_coding protein_coding MGP_AJ_T0020747.1 MGP_AJ_G0016172.1 mouse_genomes_project 1 73398647 73402818 - Chpf protein_coding retained_intron MGP_AJ_T0020748.1 MGP_AJ_G0016172.1 mouse_genomes_project 1 73398647 73403205 - MGP_AJ_P0020748 Chpf protein_coding nonsense_mediated_decay MGP_AJ_T0020749.1 MGP_AJ_G0016172.1 mouse_genomes_project 1 73401581 73403200 - MGP_AJ_P0020749 Chpf protein_coding nonsense_mediated_decay MGP_AJ_T0000727.1 MGP_AJ_G0000666.1 mouse_genomes_project 1 163896034 163897369 + TEC TEC MGP_AJ_T0021198.1 MGP_AJ_G0016267.1 mouse_genomes_project 1 86598567 86617869 + MGP_AJ_P0021198 Spp2 protein_coding protein_coding MGP_AJ_T0021199.1 MGP_AJ_G0016267.1 mouse_genomes_project 1 86598823 86617865 + MGP_AJ_P0021199 Spp2 protein_coding nonsense_mediated_decay MGP_AJ_T0005740.1 MGP_AJ_G0004820.1 mouse_genomes_project 1 56335197 56342665 + Gm15834 lincRNA lincRNA MGP_AJ_T0005741.1 MGP_AJ_G0004820.1 mouse_genomes_project 1 56335201 56347579 + Gm15834 lincRNA lincRNA MGP_AJ_T0005742.1 MGP_AJ_G0004820.1 mouse_genomes_project 1 56335204 56353283 + Gm15834 lincRNA lincRNA MGP_AJ_T0022420.1 MGP_AJ_G0016534.1 mouse_genomes_project 1 137681433 137863242 - MGP_AJ_P0022420 Crb1 protein_coding protein_coding MGP_AJ_T0022421.1 MGP_AJ_G0016534.1 mouse_genomes_project 1 137682621 137686640 - Crb1 protein_coding retained_intron MGP_AJ_T0022422.1 MGP_AJ_G0016534.1 mouse_genomes_project 1 137713819 137863265 - MGP_AJ_P0022422 Crb1 protein_coding protein_coding MGP_AJ_T0022423.1 MGP_AJ_G0016534.1 mouse_genomes_project 1 137729818 137739534 - Crb1 protein_coding retained_intron MGP_AJ_T0022424.1 MGP_AJ_G0016534.1 mouse_genomes_project 1 137731863 137863206 - MGP_AJ_P0022424 Crb1 protein_coding protein_coding MGP_AJ_T0022425.1 MGP_AJ_G0016534.1 mouse_genomes_project 1 137732925 137817434 - MGP_AJ_P0022425 Crb1 protein_coding nonsense_mediated_decay MGP_AJ_T0022426.1 MGP_AJ_G0016534.1 mouse_genomes_project 1 137732940 137817454 - MGP_AJ_P0022426 Crb1 protein_coding nonsense_mediated_decay MGP_AJ_T0011237.1 MGP_AJ_G0009359.1 mouse_genomes_project 1 7491334 7491574 + Gm26348 misc_RNA misc_RNA MGP_AJ_T0009567.1 MGP_AJ_G0007689.1 mouse_genomes_project 1 192368851 192368919 - Mir205 miRNA miRNA MGP_AJ_T0099159.1 MGP_AJ_G0037125.1 mouse_genomes_project 1 31008894 31009000 + Gm23453 snRNA snRNA MGP_AJ_T0012023.1 MGP_AJ_G0010118.1 mouse_genomes_project 1 49717296 49717708 - processed_pseudogene processed_pseudogene MGP_AJ_T0000414.1 MGP_AJ_G0000356.1 mouse_genomes_project 1 23155655 23159435 - TEC TEC MGP_AJ_T0020084.1 MGP_AJ_G0016054.1 mouse_genomes_project 1 57826497 57899523 + MGP_AJ_P0020084 Fam117b protein_coding protein_coding MGP_AJ_T0020085.1 MGP_AJ_G0016054.1 mouse_genomes_project 1 57884362 57895692 + MGP_AJ_P0020085 Fam117b protein_coding nonsense_mediated_decay MGP_AJ_T0020086.1 MGP_AJ_G0016054.1 mouse_genomes_project 1 57893356 57895115 + Fam117b protein_coding retained_intron MGP_AJ_T0011970.1 MGP_AJ_G0010065.1 mouse_genomes_project 1 32574304 32574539 + processed_pseudogene processed_pseudogene MGP_AJ_T0002999.1 MGP_AJ_G0002806.1 mouse_genomes_project 1 190950663 190957927 + Gm26879 antisense antisense MGP_AJ_T0002908.1 MGP_AJ_G0002736.1 mouse_genomes_project 1 149027640 149070723 + antisense antisense MGP_AJ_T0002909.1 MGP_AJ_G0002736.1 mouse_genomes_project 1 149027673 149186071 + antisense antisense MGP_AJ_T0100444.1 MGP_AJ_G0038410.1 mouse_genomes_project 1 84366478 84366548 - Snord82 snoRNA snoRNA MGP_AJ_T0012175.1 MGP_AJ_G0010270.1 mouse_genomes_project 1 104449781 104450729 + processed_pseudogene processed_pseudogene MGP_AJ_T0099153.1 MGP_AJ_G0037119.1 mouse_genomes_project 1 22861876 22861980 + Gm25294 snRNA snRNA MGP_AJ_T0012267.1 MGP_AJ_G0010362.1 mouse_genomes_project 1 143568403 143569396 - processed_pseudogene processed_pseudogene MGP_AJ_T0023533.1 MGP_AJ_G0016759.1 mouse_genomes_project 1 170764984 170774979 - MGP_AJ_P0023533 Pea15a protein_coding protein_coding MGP_AJ_T0023534.1 MGP_AJ_G0016759.1 mouse_genomes_project 1 170764984 170774979 - MGP_AJ_P0023534 Pea15a protein_coding protein_coding MGP_AJ_T0023535.1 MGP_AJ_G0016759.1 mouse_genomes_project 1 170766669 170768040 - Pea15a protein_coding processed_transcript MGP_AJ_T0023536.1 MGP_AJ_G0016759.1 mouse_genomes_project 1 170767385 170774872 - MGP_AJ_P0023536 Pea15a protein_coding protein_coding MGP_AJ_T0023537.1 MGP_AJ_G0016759.1 mouse_genomes_project 1 170767999 170774979 - Pea15a protein_coding retained_intron MGP_AJ_T0000437.1 MGP_AJ_G0000378.1 mouse_genomes_project 1 31636162 31637769 + TEC TEC MGP_AJ_T0019579.1 MGP_AJ_G0015962.1 mouse_genomes_project 1 40805506 40822731 + MGP_AJ_P0019579 AI597479 protein_coding protein_coding MGP_AJ_T0006035.1 MGP_AJ_G0005050.1 mouse_genomes_project 1 183589176 183595665 + 4930488B22Rik lincRNA lincRNA MGP_AJ_T0009537.1 MGP_AJ_G0007659.1 mouse_genomes_project 1 136480243 136480323 + Mir181b-1 miRNA miRNA MGP_AJ_T0009480.1 MGP_AJ_G0007602.1 mouse_genomes_project 1 33942434 33942511 - Mir6898 miRNA miRNA MGP_AJ_T0021503.1 MGP_AJ_G0016333.1 mouse_genomes_project 1 92250612 92273942 + MGP_AJ_P0021503 protein_coding protein_coding MGP_AJ_T0021507.1 MGP_AJ_G0016333.1 mouse_genomes_project 1 92259495 92272817 + MGP_AJ_P0021507 protein_coding protein_coding MGP_AJ_T0019431.1 MGP_AJ_G0015929.1 mouse_genomes_project 1 35547666 35558233 - MGP_AJ_P0019431 Lyg2 protein_coding protein_coding MGP_AJ_T0012052.1 MGP_AJ_G0010147.1 mouse_genomes_project 1 58447390 58447623 - processed_pseudogene processed_pseudogene MGP_AJ_T0006063.1 MGP_AJ_G0005074.1 mouse_genomes_project 1 192368626 192371565 - 4631405K08Rik lincRNA lincRNA MGP_AJ_T0019132.1 MGP_AJ_G0015874.1 mouse_genomes_project 1 24086621 24092807 - MGP_AJ_P0019132 protein_coding protein_coding MGP_AJ_T0005945.1 MGP_AJ_G0004983.1 mouse_genomes_project 1 152488502 152495441 - Gm28286 lincRNA lincRNA MGP_AJ_T0022455.1 MGP_AJ_G0016543.1 mouse_genomes_project 1 142039655 142148534 - MGP_AJ_P0022455 Cdc73 protein_coding protein_coding MGP_AJ_T0022456.1 MGP_AJ_G0016543.1 mouse_genomes_project 1 142047010 142081451 - Cdc73 protein_coding processed_transcript MGP_AJ_T0022457.1 MGP_AJ_G0016543.1 mouse_genomes_project 1 142074716 142077443 - Cdc73 protein_coding retained_intron MGP_AJ_T0022458.1 MGP_AJ_G0016543.1 mouse_genomes_project 1 142080337 142083395 - Cdc73 protein_coding retained_intron MGP_AJ_T0022460.1 MGP_AJ_G0016543.1 mouse_genomes_project 1 142135715 142147842 - MGP_AJ_P0022460 Cdc73 protein_coding nonsense_mediated_decay MGP_AJ_T0023870.1 MGP_AJ_G0016852.1 mouse_genomes_project 1 179607805 179635493 + MGP_AJ_P0023870 Acbd3 protein_coding protein_coding MGP_AJ_T0023871.1 MGP_AJ_G0016852.1 mouse_genomes_project 1 179611623 179616267 + Acbd3 protein_coding retained_intron MGP_AJ_T0019588.1 MGP_AJ_G0015966.1 mouse_genomes_project 1 41448018 41531859 - MGP_AJ_P0019588 Uxs1 protein_coding protein_coding MGP_AJ_T0019589.1 MGP_AJ_G0015966.1 mouse_genomes_project 1 41450574 41531800 - MGP_AJ_P0019589 Uxs1 protein_coding nonsense_mediated_decay MGP_AJ_T0019590.1 MGP_AJ_G0015966.1 mouse_genomes_project 1 41468235 41531859 - MGP_AJ_P0019590 Uxs1 protein_coding protein_coding MGP_AJ_T0019591.1 MGP_AJ_G0015966.1 mouse_genomes_project 1 41474963 41531080 - Uxs1 protein_coding processed_transcript MGP_AJ_T0019592.1 MGP_AJ_G0015966.1 mouse_genomes_project 1 41474963 41531809 - MGP_AJ_P0019592 Uxs1 protein_coding protein_coding MGP_AJ_T0019593.1 MGP_AJ_G0015966.1 mouse_genomes_project 1 41478099 41531821 - Uxs1 protein_coding processed_transcript MGP_AJ_T0019594.1 MGP_AJ_G0015966.1 mouse_genomes_project 1 41482127 41531821 - MGP_AJ_P0019594 Uxs1 protein_coding nonsense_mediated_decay MGP_AJ_T0019595.1 MGP_AJ_G0015966.1 mouse_genomes_project 1 41493750 41531833 - MGP_AJ_P0019595 Uxs1 protein_coding protein_coding MGP_AJ_T0002783.1 MGP_AJ_G0002642.1 mouse_genomes_project 1 35896291 35907505 + Gm16150 antisense antisense MGP_AJ_T0002784.1 MGP_AJ_G0002642.1 mouse_genomes_project 1 35901601 35908568 + Gm16150 antisense antisense MGP_AJ_T0099230.1 MGP_AJ_G0037196.1 mouse_genomes_project 1 175469165 175469273 + Gm26104 snRNA snRNA MGP_AJ_T0020310.1 MGP_AJ_G0016096.1 mouse_genomes_project 1 64375957 64591481 + MGP_AJ_P0020310 Unc80 protein_coding protein_coding MGP_AJ_T0020311.1 MGP_AJ_G0016096.1 mouse_genomes_project 1 64376004 64413243 + MGP_AJ_P0020311 Unc80 protein_coding nonsense_mediated_decay MGP_AJ_T0020312.1 MGP_AJ_G0016096.1 mouse_genomes_project 1 64376020 64394654 + Unc80 protein_coding retained_intron MGP_AJ_T0020313.1 MGP_AJ_G0016096.1 mouse_genomes_project 1 64376037 64590765 + MGP_AJ_P0020313 Unc80 protein_coding unknown_likely_coding MGP_AJ_T0020314.1 MGP_AJ_G0016096.1 mouse_genomes_project 1 64564331 64564909 + Unc80 protein_coding retained_intron MGP_AJ_T0020315.1 MGP_AJ_G0016096.1 mouse_genomes_project 1 64571676 64588260 + MGP_AJ_P0020315 Unc80 protein_coding protein_coding MGP_AJ_T0000695.1 MGP_AJ_G0000634.1 mouse_genomes_project 1 155518241 155520544 + TEC TEC MGP_AJ_T0021612.1 MGP_AJ_G0016359.1 mouse_genomes_project 1 105292200 105314839 + MGP_AJ_P0021612 Serpinb12 protein_coding protein_coding MGP_AJ_T0021613.1 MGP_AJ_G0016359.1 mouse_genomes_project 1 105296702 105314839 + MGP_AJ_P0021613 Serpinb12 protein_coding protein_coding MGP_AJ_T0021614.1 MGP_AJ_G0016359.1 mouse_genomes_project 1 105296704 105308217 + Serpinb12 protein_coding retained_intron MGP_AJ_T0002956.1 MGP_AJ_G0002773.1 mouse_genomes_project 1 170807928 170808928 + Gm37950 antisense antisense MGP_AJ_T0024174.1 MGP_AJ_G0016915.1 mouse_genomes_project 1 189942019 189948041 + MGP_AJ_P0024174 Spata45 protein_coding protein_coding MGP_AJ_T0024175.1 MGP_AJ_G0016915.1 mouse_genomes_project 1 189942199 189948048 + MGP_AJ_P0024175 Spata45 protein_coding protein_coding MGP_AJ_T0000685.1 MGP_AJ_G0000624.1 mouse_genomes_project 1 154287345 154287580 + TEC TEC MGP_AJ_T0000601.1 MGP_AJ_G0000542.1 mouse_genomes_project 1 122757835 122761500 - TEC TEC MGP_AJ_T0017001.1 MGP_AJ_G0015076.1 mouse_genomes_project 1 73093516 73107318 - Gm29253 processed_transcript processed_transcript MGP_AJ_T0002756.1 MGP_AJ_G0002621.1 mouse_genomes_project 1 13547777 13563261 + Gm28095 antisense antisense MGP_AJ_T0102173.1 MGP_AJ_G0039916.1 mouse_genomes_project 1 101720265 101767808 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0006057.1 MGP_AJ_G0005069.1 mouse_genomes_project 1 190170906 190193033 + Gm37168 lincRNA lincRNA MGP_AJ_T0024176.1 MGP_AJ_G0016916.1 mouse_genomes_project 1 189951008 189968382 - MGP_AJ_P0024176 Tatdn3 protein_coding protein_coding MGP_AJ_T0024177.1 MGP_AJ_G0016916.1 mouse_genomes_project 1 189951020 189968354 - MGP_AJ_P0024177 Tatdn3 protein_coding protein_coding MGP_AJ_T0024178.1 MGP_AJ_G0016916.1 mouse_genomes_project 1 189951024 189968354 - MGP_AJ_P0024178 Tatdn3 protein_coding protein_coding MGP_AJ_T0024179.1 MGP_AJ_G0016916.1 mouse_genomes_project 1 189951024 189968355 - MGP_AJ_P0024179 Tatdn3 protein_coding protein_coding MGP_AJ_T0024180.1 MGP_AJ_G0016916.1 mouse_genomes_project 1 189951027 189955367 - Tatdn3 protein_coding retained_intron MGP_AJ_T0024181.1 MGP_AJ_G0016916.1 mouse_genomes_project 1 189960263 189964185 - Tatdn3 protein_coding retained_intron MGP_AJ_T0024182.1 MGP_AJ_G0016916.1 mouse_genomes_project 1 189963237 189964780 - Tatdn3 protein_coding retained_intron MGP_AJ_T0024183.1 MGP_AJ_G0016916.1 mouse_genomes_project 1 189964119 189968354 - Tatdn3 protein_coding retained_intron MGP_AJ_T0024184.1 MGP_AJ_G0016916.1 mouse_genomes_project 1 189965500 189968354 - Tatdn3 protein_coding retained_intron MGP_AJ_T0012178.1 MGP_AJ_G0010273.1 mouse_genomes_project 1 106353784 106354383 + processed_pseudogene processed_pseudogene MGP_AJ_T0000724.1 MGP_AJ_G0000663.1 mouse_genomes_project 1 162938160 162940442 + TEC TEC MGP_AJ_T0098510.1 MGP_AJ_G0036494.1 mouse_genomes_project 1 117004765 117004882 - Gm22094 rRNA rRNA MGP_AJ_T0102142.1 MGP_AJ_G0039886.1 mouse_genomes_project 1 18719384 18730322 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0005754.1 MGP_AJ_G0004832.1 mouse_genomes_project 1 61012695 61014576 + Ino80dos lincRNA lincRNA MGP_AJ_T0005755.1 MGP_AJ_G0004832.1 mouse_genomes_project 1 61013713 61014947 + Ino80dos lincRNA lincRNA MGP_AJ_T0005756.1 MGP_AJ_G0004832.1 mouse_genomes_project 1 61014086 61057845 + Ino80dos lincRNA lincRNA MGP_AJ_T0005757.1 MGP_AJ_G0004832.1 mouse_genomes_project 1 61014355 61056800 + Ino80dos lincRNA lincRNA MGP_AJ_T0021914.1 MGP_AJ_G0016426.1 mouse_genomes_project 1 129300273 129315277 + MGP_AJ_P0021914 Fcmr protein_coding protein_coding MGP_AJ_T0021915.1 MGP_AJ_G0016426.1 mouse_genomes_project 1 129300384 129309702 + Fcmr protein_coding processed_transcript MGP_AJ_T0021916.1 MGP_AJ_G0016426.1 mouse_genomes_project 1 129312739 129315265 + Fcmr protein_coding processed_transcript MGP_AJ_T0021917.1 MGP_AJ_G0016426.1 mouse_genomes_project 1 129312912 129315276 + Fcmr protein_coding processed_transcript MGP_AJ_T0012271.1 MGP_AJ_G0010366.1 mouse_genomes_project 1 146350163 146350698 + processed_pseudogene processed_pseudogene MGP_AJ_T0019774.1 MGP_AJ_G0015995.1 mouse_genomes_project 1 50692445 50773342 - MGP_AJ_P0019774 1700019D03Rik protein_coding protein_coding MGP_AJ_T0019775.1 MGP_AJ_G0015995.1 mouse_genomes_project 1 50692450 50733959 - MGP_AJ_P0019775 1700019D03Rik protein_coding protein_coding MGP_AJ_T0019776.1 MGP_AJ_G0015995.1 mouse_genomes_project 1 50692460 50747006 - MGP_AJ_P0019776 1700019D03Rik protein_coding protein_coding MGP_AJ_T0012197.1 MGP_AJ_G0010292.1 mouse_genomes_project 1 111242105 111243495 - processed_pseudogene processed_pseudogene MGP_AJ_T0023852.1 MGP_AJ_G0016849.1 mouse_genomes_project 1 179447178 179457952 + MGP_AJ_P0023852 Parp1 protein_coding nonsense_mediated_decay MGP_AJ_T0023853.1 MGP_AJ_G0016849.1 mouse_genomes_project 1 179447183 179479946 + MGP_AJ_P0023853 Parp1 protein_coding protein_coding MGP_AJ_T0023854.1 MGP_AJ_G0016849.1 mouse_genomes_project 1 179447479 179456399 + MGP_AJ_P0023854 Parp1 protein_coding protein_coding MGP_AJ_T0023855.1 MGP_AJ_G0016849.1 mouse_genomes_project 1 179468256 179470440 + Parp1 protein_coding retained_intron MGP_AJ_T0023856.1 MGP_AJ_G0016849.1 mouse_genomes_project 1 179470072 179472032 + Parp1 protein_coding retained_intron MGP_AJ_T0023857.1 MGP_AJ_G0016849.1 mouse_genomes_project 1 179476916 179478888 + Parp1 protein_coding retained_intron MGP_AJ_T0023858.1 MGP_AJ_G0016849.1 mouse_genomes_project 1 179477527 179478798 + Parp1 protein_coding retained_intron MGP_AJ_T0023859.1 MGP_AJ_G0016849.1 mouse_genomes_project 1 179477679 179479944 + MGP_AJ_P0023859 Parp1 protein_coding protein_coding MGP_AJ_T0005906.1 MGP_AJ_G0004951.1 mouse_genomes_project 1 132068710 132072717 + Gm26706 lincRNA lincRNA MGP_AJ_T0021617.1 MGP_AJ_G0016361.1 mouse_genomes_project 1 105785192 105798189 + MGP_AJ_P0021617 Serpinb11 protein_coding protein_coding MGP_AJ_T0021618.1 MGP_AJ_G0016361.1 mouse_genomes_project 1 105785923 105804498 + MGP_AJ_P0021618 Serpinb11 protein_coding protein_coding MGP_AJ_T0102146.1 MGP_AJ_G0039889.1 mouse_genomes_project 1 43734281 43748038 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0024197.1 MGP_AJ_G0016921.1 mouse_genomes_project 1 190210915 190222837 - MGP_AJ_P0024197 Nenf protein_coding protein_coding MGP_AJ_T0002838.1 MGP_AJ_G0002681.1 mouse_genomes_project 1 73290828 73297631 - Gm15179 antisense antisense MGP_AJ_T0002839.1 MGP_AJ_G0002681.1 mouse_genomes_project 1 73290888 73293071 - Gm15179 antisense antisense MGP_AJ_T0000544.1 MGP_AJ_G0000485.1 mouse_genomes_project 1 84126430 84128946 + TEC TEC MGP_AJ_T0098517.1 MGP_AJ_G0036501.1 mouse_genomes_project 1 160052999 160053117 - Gm25488 rRNA rRNA MGP_AJ_T0005866.1 MGP_AJ_G0004920.1 mouse_genomes_project 1 106324541 106351883 + D830032E09Rik lincRNA lincRNA MGP_AJ_T0005867.1 MGP_AJ_G0004920.1 mouse_genomes_project 1 106324567 106351896 + D830032E09Rik lincRNA lincRNA MGP_AJ_T0005868.1 MGP_AJ_G0004920.1 mouse_genomes_project 1 106337698 106430301 + D830032E09Rik lincRNA lincRNA MGP_AJ_T0020800.1 MGP_AJ_G0016181.1 mouse_genomes_project 1 76373680 76444516 - MGP_AJ_P0020800 Farsb protein_coding protein_coding MGP_AJ_T0020801.1 MGP_AJ_G0016181.1 mouse_genomes_project 1 76380775 76444554 - MGP_AJ_P0020801 Farsb protein_coding protein_coding MGP_AJ_T0020802.1 MGP_AJ_G0016181.1 mouse_genomes_project 1 76380792 76444519 - MGP_AJ_P0020802 Farsb protein_coding nonsense_mediated_decay MGP_AJ_T0020803.1 MGP_AJ_G0016181.1 mouse_genomes_project 1 76418663 76444516 - MGP_AJ_P0020803 Farsb protein_coding protein_coding MGP_AJ_T0020804.1 MGP_AJ_G0016181.1 mouse_genomes_project 1 76426857 76444452 - Farsb protein_coding processed_transcript MGP_AJ_T0020805.1 MGP_AJ_G0016181.1 mouse_genomes_project 1 76428243 76444499 - MGP_AJ_P0020805 Farsb protein_coding protein_coding MGP_AJ_T0020806.1 MGP_AJ_G0016181.1 mouse_genomes_project 1 76433528 76444494 - Farsb protein_coding retained_intron MGP_AJ_T0012371.1 MGP_AJ_G0010466.1 mouse_genomes_project 1 190309192 190309774 + processed_pseudogene processed_pseudogene MGP_AJ_T0018922.1 MGP_AJ_G0015823.1 mouse_genomes_project 1 10477252 10706272 - MGP_AJ_P0018922 Ncoa2 protein_coding protein_coding MGP_AJ_T0018923.1 MGP_AJ_G0015823.1 mouse_genomes_project 1 10477306 10707916 - MGP_AJ_P0018923 Ncoa2 protein_coding protein_coding MGP_AJ_T0018924.1 MGP_AJ_G0015823.1 mouse_genomes_project 1 10480625 10707916 - MGP_AJ_P0018924 Ncoa2 protein_coding protein_coding MGP_AJ_T0018925.1 MGP_AJ_G0015823.1 mouse_genomes_project 1 10483888 10485203 - Ncoa2 protein_coding processed_transcript MGP_AJ_T0018926.1 MGP_AJ_G0015823.1 mouse_genomes_project 1 10485172 10487082 - Ncoa2 protein_coding retained_intron MGP_AJ_T0018927.1 MGP_AJ_G0015823.1 mouse_genomes_project 1 10487003 10489580 - Ncoa2 protein_coding retained_intron MGP_AJ_T0018928.1 MGP_AJ_G0015823.1 mouse_genomes_project 1 10503950 10707916 - Ncoa2 protein_coding retained_intron MGP_AJ_T0018929.1 MGP_AJ_G0015823.1 mouse_genomes_project 1 10505377 10707862 - Ncoa2 protein_coding retained_intron MGP_AJ_T0018930.1 MGP_AJ_G0015823.1 mouse_genomes_project 1 10521822 10706262 - Ncoa2 protein_coding retained_intron MGP_AJ_T0018931.1 MGP_AJ_G0015823.1 mouse_genomes_project 1 10524155 10707862 - Ncoa2 protein_coding retained_intron MGP_AJ_T0018932.1 MGP_AJ_G0015823.1 mouse_genomes_project 1 10529654 10635490 - MGP_AJ_P0018932 Ncoa2 protein_coding protein_coding MGP_AJ_T0011968.1 MGP_AJ_G0010063.1 mouse_genomes_project 1 32558236 32558465 - processed_pseudogene processed_pseudogene MGP_AJ_T0000460.1 MGP_AJ_G0000401.1 mouse_genomes_project 1 42262964 42267542 + TEC TEC MGP_AJ_T0021714.1 MGP_AJ_G0016381.1 mouse_genomes_project 1 118024164 118211088 - MGP_AJ_P0021714 Ptpn4 protein_coding protein_coding MGP_AJ_T0021715.1 MGP_AJ_G0016381.1 mouse_genomes_project 1 118029741 118067186 - MGP_AJ_P0021715 Ptpn4 protein_coding nonsense_mediated_decay MGP_AJ_T0021716.1 MGP_AJ_G0016381.1 mouse_genomes_project 1 118069207 118210822 - MGP_AJ_P0021716 Ptpn4 protein_coding protein_coding MGP_AJ_T0021717.1 MGP_AJ_G0016381.1 mouse_genomes_project 1 118072230 118121277 - MGP_AJ_P0021717 Ptpn4 protein_coding nonsense_mediated_decay MGP_AJ_T0021718.1 MGP_AJ_G0016381.1 mouse_genomes_project 1 118086642 118097006 - Ptpn4 protein_coding retained_intron MGP_AJ_T0021719.1 MGP_AJ_G0016381.1 mouse_genomes_project 1 118107070 118158750 - MGP_AJ_P0021719 Ptpn4 protein_coding nonsense_mediated_decay MGP_AJ_T0021720.1 MGP_AJ_G0016381.1 mouse_genomes_project 1 118123245 118176124 - MGP_AJ_P0021720 Ptpn4 protein_coding protein_coding MGP_AJ_T0021721.1 MGP_AJ_G0016381.1 mouse_genomes_project 1 118140376 118210546 - MGP_AJ_P0021721 Ptpn4 protein_coding nonsense_mediated_decay MGP_AJ_T0021722.1 MGP_AJ_G0016381.1 mouse_genomes_project 1 118140716 118210546 - MGP_AJ_P0021722 Ptpn4 protein_coding protein_coding MGP_AJ_T0021723.1 MGP_AJ_G0016381.1 mouse_genomes_project 1 118148245 118176144 - MGP_AJ_P0021723 Ptpn4 protein_coding protein_coding MGP_AJ_T0021724.1 MGP_AJ_G0016381.1 mouse_genomes_project 1 118148305 118210474 - MGP_AJ_P0021724 Ptpn4 protein_coding protein_coding MGP_AJ_T0024290.1 MGP_AJ_G0016939.1 mouse_genomes_project 1 192025196 192051076 - MGP_AJ_P0024290 Traf3ip3 protein_coding protein_coding MGP_AJ_T0024291.1 MGP_AJ_G0016939.1 mouse_genomes_project 1 192025237 192051289 - MGP_AJ_P0024291 Traf3ip3 protein_coding nonsense_mediated_decay MGP_AJ_T0024292.1 MGP_AJ_G0016939.1 mouse_genomes_project 1 192025247 192051289 - MGP_AJ_P0024292 Traf3ip3 protein_coding protein_coding MGP_AJ_T0024293.1 MGP_AJ_G0016939.1 mouse_genomes_project 1 192028980 192034558 - MGP_AJ_P0024293 Traf3ip3 protein_coding protein_coding MGP_AJ_T0024294.1 MGP_AJ_G0016939.1 mouse_genomes_project 1 192028984 192047564 - Traf3ip3 protein_coding retained_intron MGP_AJ_T0024295.1 MGP_AJ_G0016939.1 mouse_genomes_project 1 192034313 192044328 - MGP_AJ_P0024295 Traf3ip3 protein_coding protein_coding MGP_AJ_T0024296.1 MGP_AJ_G0016939.1 mouse_genomes_project 1 192034402 192036880 - MGP_AJ_P0024296 Traf3ip3 protein_coding protein_coding MGP_AJ_T0024297.1 MGP_AJ_G0016939.1 mouse_genomes_project 1 192034929 192051197 - Traf3ip3 protein_coding retained_intron MGP_AJ_T0024298.1 MGP_AJ_G0016939.1 mouse_genomes_project 1 192044105 192051258 - Traf3ip3 protein_coding retained_intron MGP_AJ_T0024299.1 MGP_AJ_G0016939.1 mouse_genomes_project 1 192044272 192047713 - MGP_AJ_P0024299 Traf3ip3 protein_coding protein_coding MGP_AJ_T0024300.1 MGP_AJ_G0016939.1 mouse_genomes_project 1 192047769 192051240 - Traf3ip3 protein_coding processed_transcript MGP_AJ_T0024301.1 MGP_AJ_G0016939.1 mouse_genomes_project 1 192047776 192051244 - Traf3ip3 protein_coding processed_transcript MGP_AJ_T0024302.1 MGP_AJ_G0016939.1 mouse_genomes_project 1 192050637 192051445 - Traf3ip3 protein_coding processed_transcript MGP_AJ_T0005873.1 MGP_AJ_G0004925.1 mouse_genomes_project 1 117428930 117430305 + Gm26831 lincRNA lincRNA MGP_AJ_T0020620.1 MGP_AJ_G0016158.1 mouse_genomes_project 1 73102640 73114096 - MGP_AJ_P0020620 Atg9a protein_coding protein_coding MGP_AJ_T0020621.1 MGP_AJ_G0016158.1 mouse_genomes_project 1 73102645 73114366 - MGP_AJ_P0020621 Atg9a protein_coding protein_coding MGP_AJ_T0020622.1 MGP_AJ_G0016158.1 mouse_genomes_project 1 73102645 73114093 - MGP_AJ_P0020622 Atg9a protein_coding nonsense_mediated_decay MGP_AJ_T0020623.1 MGP_AJ_G0016158.1 mouse_genomes_project 1 73102645 73112552 - MGP_AJ_P0020623 Atg9a protein_coding protein_coding MGP_AJ_T0020624.1 MGP_AJ_G0016158.1 mouse_genomes_project 1 73102646 73114093 - MGP_AJ_P0020624 Atg9a protein_coding protein_coding MGP_AJ_T0020625.1 MGP_AJ_G0016158.1 mouse_genomes_project 1 73105161 73108219 - MGP_AJ_P0020625 Atg9a protein_coding protein_coding MGP_AJ_T0020626.1 MGP_AJ_G0016158.1 mouse_genomes_project 1 73109725 73113895 - Atg9a protein_coding retained_intron MGP_AJ_T0020627.1 MGP_AJ_G0016158.1 mouse_genomes_project 1 73111937 73114132 - Atg9a protein_coding retained_intron MGP_AJ_T0020628.1 MGP_AJ_G0016158.1 mouse_genomes_project 1 73112285 73113884 - MGP_AJ_P0020628 Atg9a protein_coding protein_coding MGP_AJ_T0000672.1 MGP_AJ_G0000611.1 mouse_genomes_project 1 147761885 147763340 - TEC TEC MGP_AJ_T0012053.1 MGP_AJ_G0010148.1 mouse_genomes_project 1 58461576 58461993 + processed_pseudogene processed_pseudogene MGP_AJ_T0023748.1 MGP_AJ_G0016830.1 mouse_genomes_project 1 177019025 177086544 + MGP_AJ_P0023748 Desi2 protein_coding protein_coding MGP_AJ_T0023749.1 MGP_AJ_G0016830.1 mouse_genomes_project 1 177019133 177092958 + MGP_AJ_P0023749 Desi2 protein_coding protein_coding MGP_AJ_T0023750.1 MGP_AJ_G0016830.1 mouse_genomes_project 1 177019501 177084981 + MGP_AJ_P0023750 Desi2 protein_coding protein_coding MGP_AJ_T0023751.1 MGP_AJ_G0016830.1 mouse_genomes_project 1 177091747 177092952 + MGP_AJ_P0023751 Desi2 protein_coding protein_coding MGP_AJ_T0012289.1 MGP_AJ_G0010384.1 mouse_genomes_project 1 151376592 151377295 - processed_pseudogene processed_pseudogene MGP_AJ_T0019714.1 MGP_AJ_G0015988.1 mouse_genomes_project 1 49900288 49935549 + MGP_AJ_P0019714 Stat1 protein_coding protein_coding MGP_AJ_T0019715.1 MGP_AJ_G0015988.1 mouse_genomes_project 1 49900303 49942002 + MGP_AJ_P0019715 Stat1 protein_coding protein_coding MGP_AJ_T0019716.1 MGP_AJ_G0015988.1 mouse_genomes_project 1 49900338 49935549 + MGP_AJ_P0019716 Stat1 protein_coding protein_coding MGP_AJ_T0019717.1 MGP_AJ_G0015988.1 mouse_genomes_project 1 49900340 49941144 + MGP_AJ_P0019717 Stat1 protein_coding protein_coding MGP_AJ_T0019718.1 MGP_AJ_G0015988.1 mouse_genomes_project 1 49900346 49912780 + MGP_AJ_P0019718 Stat1 protein_coding protein_coding MGP_AJ_T0019719.1 MGP_AJ_G0015988.1 mouse_genomes_project 1 49900397 49935468 + MGP_AJ_P0019719 Stat1 protein_coding protein_coding MGP_AJ_T0019720.1 MGP_AJ_G0015988.1 mouse_genomes_project 1 49900407 49901243 + Stat1 protein_coding retained_intron MGP_AJ_T0019721.1 MGP_AJ_G0015988.1 mouse_genomes_project 1 49900420 49917999 + Stat1 protein_coding retained_intron MGP_AJ_T0019722.1 MGP_AJ_G0015988.1 mouse_genomes_project 1 49900472 49940867 + MGP_AJ_P0019722 Stat1 protein_coding protein_coding MGP_AJ_T0019723.1 MGP_AJ_G0015988.1 mouse_genomes_project 1 49930250 49932546 + Stat1 protein_coding retained_intron MGP_AJ_T0019724.1 MGP_AJ_G0015988.1 mouse_genomes_project 1 49930404 49942000 + MGP_AJ_P0019724 Stat1 protein_coding protein_coding MGP_AJ_T0019725.1 MGP_AJ_G0015988.1 mouse_genomes_project 1 49932399 49939697 + MGP_AJ_P0019725 Stat1 protein_coding nonsense_mediated_decay MGP_AJ_T0000664.1 MGP_AJ_G0000603.1 mouse_genomes_project 1 140053845 140055117 + TEC TEC MGP_AJ_T0022659.1 MGP_AJ_G0016581.1 mouse_genomes_project 1 152101537 152152729 + MGP_AJ_P0022659 Rgs8 protein_coding protein_coding MGP_AJ_T0022660.1 MGP_AJ_G0016581.1 mouse_genomes_project 1 152113290 152143418 + MGP_AJ_P0022660 Rgs8 protein_coding protein_coding MGP_AJ_T0022661.1 MGP_AJ_G0016581.1 mouse_genomes_project 1 152116825 152145391 + MGP_AJ_P0022661 Rgs8 protein_coding protein_coding MGP_AJ_T0022662.1 MGP_AJ_G0016581.1 mouse_genomes_project 1 152117483 152145183 + MGP_AJ_P0022662 Rgs8 protein_coding protein_coding MGP_AJ_T0022663.1 MGP_AJ_G0016581.1 mouse_genomes_project 1 152117521 152147984 + MGP_AJ_P0022663 Rgs8 protein_coding protein_coding MGP_AJ_T0022664.1 MGP_AJ_G0016581.1 mouse_genomes_project 1 152117802 152143468 + MGP_AJ_P0022664 Rgs8 protein_coding protein_coding MGP_AJ_T0022665.1 MGP_AJ_G0016581.1 mouse_genomes_project 1 152117866 152143473 + MGP_AJ_P0022665 Rgs8 protein_coding protein_coding MGP_AJ_T0022666.1 MGP_AJ_G0016581.1 mouse_genomes_project 1 152117882 152145352 + MGP_AJ_P0022666 Rgs8 protein_coding protein_coding MGP_AJ_T0022667.1 MGP_AJ_G0016581.1 mouse_genomes_project 1 152117918 152150073 + MGP_AJ_P0022667 Rgs8 protein_coding protein_coding MGP_AJ_T0022668.1 MGP_AJ_G0016581.1 mouse_genomes_project 1 152119698 152123307 + Rgs8 protein_coding processed_transcript MGP_AJ_T0011853.1 MGP_AJ_G0009948.1 mouse_genomes_project 1 2393323 2394175 - processed_pseudogene processed_pseudogene MGP_AJ_T0012189.1 MGP_AJ_G0010284.1 mouse_genomes_project 1 110111846 110115394 - processed_pseudogene processed_pseudogene MGP_AJ_T0005694.1 MGP_AJ_G0004792.1 mouse_genomes_project 1 39498423 39658082 + Gm29260 lincRNA lincRNA MGP_AJ_T0005695.1 MGP_AJ_G0004792.1 mouse_genomes_project 1 39636823 39638564 + Gm29260 lincRNA lincRNA MGP_AJ_T0020789.1 MGP_AJ_G0016178.1 mouse_genomes_project 1 75309806 75455170 - MGP_AJ_P0020789 Epha4 protein_coding protein_coding MGP_AJ_T0020790.1 MGP_AJ_G0016178.1 mouse_genomes_project 1 75309810 75455161 - MGP_AJ_P0020790 Epha4 protein_coding nonsense_mediated_decay MGP_AJ_T0020791.1 MGP_AJ_G0016178.1 mouse_genomes_project 1 75315744 75455170 - MGP_AJ_P0020791 Epha4 protein_coding protein_coding MGP_AJ_T0020792.1 MGP_AJ_G0016178.1 mouse_genomes_project 1 75316223 75320343 - MGP_AJ_P0020792 Epha4 protein_coding protein_coding MGP_AJ_T0020793.1 MGP_AJ_G0016178.1 mouse_genomes_project 1 75316241 75455161 - MGP_AJ_P0020793 Epha4 protein_coding nonsense_mediated_decay MGP_AJ_T0020794.1 MGP_AJ_G0016178.1 mouse_genomes_project 1 75340243 75455167 - Epha4 protein_coding retained_intron MGP_AJ_T0020795.1 MGP_AJ_G0016178.1 mouse_genomes_project 1 75344550 75455165 - MGP_AJ_P0020795 Epha4 protein_coding protein_coding MGP_AJ_T0020572.1 MGP_AJ_G0016146.1 mouse_genomes_project 1 72777604 72789040 + MGP_AJ_P0020572 Wnt10a protein_coding protein_coding MGP_AJ_T0020218.1 MGP_AJ_G0016077.1 mouse_genomes_project 1 61933954 62026340 - MGP_AJ_P0020218 Klf7 protein_coding protein_coding MGP_AJ_T0020219.1 MGP_AJ_G0016077.1 mouse_genomes_project 1 61946391 62026331 - MGP_AJ_P0020219 Klf7 protein_coding protein_coding MGP_AJ_T0020220.1 MGP_AJ_G0016077.1 mouse_genomes_project 1 61983614 62027131 - MGP_AJ_P0020220 Klf7 protein_coding protein_coding MGP_AJ_T0000412.1 MGP_AJ_G0000354.1 mouse_genomes_project 1 23122137 23124875 - TEC TEC MGP_AJ_T0000475.1 MGP_AJ_G0000416.1 mouse_genomes_project 1 54800073 54801911 + TEC TEC MGP_AJ_T0005923.1 MGP_AJ_G0004965.1 mouse_genomes_project 1 136430596 136434214 - Gm26979 lincRNA lincRNA MGP_AJ_T0023220.1 MGP_AJ_G0016685.1 mouse_genomes_project 1 164907611 164922060 + MGP_AJ_P0023220 Tada1 protein_coding protein_coding MGP_AJ_T0023221.1 MGP_AJ_G0016685.1 mouse_genomes_project 1 164907831 164917394 + Tada1 protein_coding retained_intron MGP_AJ_T0023222.1 MGP_AJ_G0016685.1 mouse_genomes_project 1 164907838 164912656 + Tada1 protein_coding retained_intron MGP_AJ_T0023223.1 MGP_AJ_G0016685.1 mouse_genomes_project 1 164907853 164910985 + MGP_AJ_P0023223 Tada1 protein_coding nonsense_mediated_decay MGP_AJ_T0005963.1 MGP_AJ_G0004995.1 mouse_genomes_project 1 159281613 159283741 + Gm37083 lincRNA lincRNA MGP_AJ_T0020847.1 MGP_AJ_G0016193.1 mouse_genomes_project 1 78213843 78290054 - MGP_AJ_P0020847 Cul3 protein_coding protein_coding MGP_AJ_T0020848.1 MGP_AJ_G0016193.1 mouse_genomes_project 1 78215743 78289885 - MGP_AJ_P0020848 Cul3 protein_coding protein_coding MGP_AJ_T0020849.1 MGP_AJ_G0016193.1 mouse_genomes_project 1 78215867 78226363 - MGP_AJ_P0020849 Cul3 protein_coding protein_coding MGP_AJ_T0020850.1 MGP_AJ_G0016193.1 mouse_genomes_project 1 78216162 78225486 - Cul3 protein_coding retained_intron MGP_AJ_T0020851.1 MGP_AJ_G0016193.1 mouse_genomes_project 1 78235972 78289881 - MGP_AJ_P0020851 Cul3 protein_coding nonsense_mediated_decay MGP_AJ_T0020852.1 MGP_AJ_G0016193.1 mouse_genomes_project 1 78237753 78289853 - MGP_AJ_P0020852 Cul3 protein_coding nonsense_mediated_decay MGP_AJ_T0006012.1 MGP_AJ_G0005036.1 mouse_genomes_project 1 180722875 180732021 + lincRNA lincRNA MGP_AJ_T0006013.1 MGP_AJ_G0005036.1 mouse_genomes_project 1 180725739 180731999 + lincRNA lincRNA MGP_AJ_T0006014.1 MGP_AJ_G0005036.1 mouse_genomes_project 1 180730547 180733050 + lincRNA lincRNA MGP_AJ_T0005821.1 MGP_AJ_G0004880.1 mouse_genomes_project 1 86652295 86658345 + Gm28888 lincRNA lincRNA MGP_AJ_T0000575.1 MGP_AJ_G0000516.1 mouse_genomes_project 1 103146567 103149582 + TEC TEC MGP_AJ_T0000378.1 MGP_AJ_G0000322.1 mouse_genomes_project 1 10632808 10634677 - TEC TEC MGP_AJ_T0000674.1 MGP_AJ_G0000613.1 mouse_genomes_project 1 147789616 147791922 - TEC TEC MGP_AJ_T0100399.1 MGP_AJ_G0038365.1 mouse_genomes_project 1 7263238 7263325 - Snord87 snoRNA snoRNA MGP_AJ_T0099217.1 MGP_AJ_G0037183.1 mouse_genomes_project 1 161913578 161913686 + Gm24940 snRNA snRNA MGP_AJ_T0023463.1 MGP_AJ_G0016743.1 mouse_genomes_project 1 170014444 170042007 + MGP_AJ_P0023463 F11r protein_coding protein_coding MGP_AJ_T0023464.1 MGP_AJ_G0016743.1 mouse_genomes_project 1 170014488 170037528 + F11r protein_coding retained_intron MGP_AJ_T0023465.1 MGP_AJ_G0016743.1 mouse_genomes_project 1 170040256 170041051 + F11r protein_coding retained_intron MGP_AJ_T0011900.1 MGP_AJ_G0009995.1 mouse_genomes_project 1 14771790 14772276 - processed_pseudogene processed_pseudogene MGP_AJ_T0005725.1 MGP_AJ_G0004809.1 mouse_genomes_project 1 49239915 49240915 - 1700072G22Rik lincRNA lincRNA MGP_AJ_T0022814.1 MGP_AJ_G0016609.1 mouse_genomes_project 1 155278912 155412860 - MGP_AJ_P0022814 Ralgps2 protein_coding protein_coding MGP_AJ_T0022815.1 MGP_AJ_G0016609.1 mouse_genomes_project 1 155281492 155412857 - MGP_AJ_P0022815 Ralgps2 protein_coding nonsense_mediated_decay MGP_AJ_T0022816.1 MGP_AJ_G0016609.1 mouse_genomes_project 1 155281492 155412801 - MGP_AJ_P0022816 Ralgps2 protein_coding protein_coding MGP_AJ_T0022817.1 MGP_AJ_G0016609.1 mouse_genomes_project 1 155282435 155412645 - MGP_AJ_P0022817 Ralgps2 protein_coding protein_coding MGP_AJ_T0022818.1 MGP_AJ_G0016609.1 mouse_genomes_project 1 155282841 155412789 - MGP_AJ_P0022818 Ralgps2 protein_coding protein_coding MGP_AJ_T0022819.1 MGP_AJ_G0016609.1 mouse_genomes_project 1 155282847 155412866 - MGP_AJ_P0022819 Ralgps2 protein_coding protein_coding MGP_AJ_T0022820.1 MGP_AJ_G0016609.1 mouse_genomes_project 1 155283555 155288206 - Ralgps2 protein_coding retained_intron MGP_AJ_T0022821.1 MGP_AJ_G0016609.1 mouse_genomes_project 1 155287718 155412884 - MGP_AJ_P0022821 Ralgps2 protein_coding protein_coding MGP_AJ_T0022822.1 MGP_AJ_G0016609.1 mouse_genomes_project 1 155291142 155412825 - MGP_AJ_P0022822 Ralgps2 protein_coding protein_coding MGP_AJ_T0022823.1 MGP_AJ_G0016609.1 mouse_genomes_project 1 155293494 155412851 - MGP_AJ_P0022823 Ralgps2 protein_coding protein_coding MGP_AJ_T0022824.1 MGP_AJ_G0016609.1 mouse_genomes_project 1 155293513 155412076 - MGP_AJ_P0022824 Ralgps2 protein_coding protein_coding MGP_AJ_T0022825.1 MGP_AJ_G0016609.1 mouse_genomes_project 1 155303095 155305447 - Ralgps2 protein_coding retained_intron MGP_AJ_T0022826.1 MGP_AJ_G0016609.1 mouse_genomes_project 1 155303149 155307291 - Ralgps2 protein_coding retained_intron MGP_AJ_T0022829.1 MGP_AJ_G0016609.1 mouse_genomes_project 1 155358525 155412392 - MGP_AJ_P0022829 Ralgps2 protein_coding protein_coding MGP_AJ_T0022830.1 MGP_AJ_G0016609.1 mouse_genomes_project 1 155374547 155412039 - MGP_AJ_P0022830 Ralgps2 protein_coding protein_coding MGP_AJ_T0020814.1 MGP_AJ_G0016184.1 mouse_genomes_project 1 76621043 76670353 + MGP_AJ_P0020814 Acsl3 protein_coding protein_coding MGP_AJ_T0020815.1 MGP_AJ_G0016184.1 mouse_genomes_project 1 76621101 76669577 + MGP_AJ_P0020815 Acsl3 protein_coding protein_coding MGP_AJ_T0020818.1 MGP_AJ_G0016184.1 mouse_genomes_project 1 76634035 76651310 + MGP_AJ_P0020818 Acsl3 protein_coding protein_coding MGP_AJ_T0020819.1 MGP_AJ_G0016184.1 mouse_genomes_project 1 76636357 76670357 + MGP_AJ_P0020819 Acsl3 protein_coding protein_coding MGP_AJ_T0020820.1 MGP_AJ_G0016184.1 mouse_genomes_project 1 76645039 76655386 + Acsl3 protein_coding retained_intron MGP_AJ_T0020821.1 MGP_AJ_G0016184.1 mouse_genomes_project 1 76653291 76659643 + Acsl3 protein_coding retained_intron MGP_AJ_T0020822.1 MGP_AJ_G0016184.1 mouse_genomes_project 1 76659269 76663899 + Acsl3 protein_coding retained_intron MGP_AJ_T0099198.1 MGP_AJ_G0037164.1 mouse_genomes_project 1 126848664 126848769 - Gm25384 snRNA snRNA MGP_AJ_T0098883.1 MGP_AJ_G0036866.1 mouse_genomes_project 1 151305553 151307332 - Gm28791 sense_intronic sense_intronic MGP_AJ_T0005726.1 MGP_AJ_G0004810.1 mouse_genomes_project 1 49289523 49294760 - Gm17767 lincRNA lincRNA MGP_AJ_T0005727.1 MGP_AJ_G0004810.1 mouse_genomes_project 1 49291935 49377262 - Gm17767 lincRNA lincRNA MGP_AJ_T0023255.1 MGP_AJ_G0016694.1 mouse_genomes_project 1 165885854 165907723 - MGP_AJ_P0023255 Mgst3 protein_coding protein_coding MGP_AJ_T0023559.1 MGP_AJ_G0016767.1 mouse_genomes_project 1 171053616 171056832 + MGP_AJ_P0023559 Slamf9 protein_coding protein_coding MGP_AJ_T0005784.1 MGP_AJ_G0004852.1 mouse_genomes_project 1 71362212 71376885 - Pinc lincRNA lincRNA MGP_AJ_T0005785.1 MGP_AJ_G0004852.1 mouse_genomes_project 1 71366643 71376885 - Pinc lincRNA lincRNA MGP_AJ_T0005679.1 MGP_AJ_G0004780.1 mouse_genomes_project 1 33466840 33471682 + lincRNA lincRNA MGP_AJ_T0023259.1 MGP_AJ_G0016698.1 mouse_genomes_project 1 166627770 166959689 - MGP_AJ_P0023259 Pbx1 protein_coding protein_coding MGP_AJ_T0023260.1 MGP_AJ_G0016698.1 mouse_genomes_project 1 166672774 166959316 - MGP_AJ_P0023260 Pbx1 protein_coding protein_coding MGP_AJ_T0023261.1 MGP_AJ_G0016698.1 mouse_genomes_project 1 166677567 166959169 - MGP_AJ_P0023261 Pbx1 protein_coding protein_coding MGP_AJ_T0023262.1 MGP_AJ_G0016698.1 mouse_genomes_project 1 166677607 166683922 - Pbx1 protein_coding processed_transcript MGP_AJ_T0023263.1 MGP_AJ_G0016698.1 mouse_genomes_project 1 166677969 166958920 - MGP_AJ_P0023263 Pbx1 protein_coding protein_coding MGP_AJ_T0023264.1 MGP_AJ_G0016698.1 mouse_genomes_project 1 166702831 166959427 - MGP_AJ_P0023264 Pbx1 protein_coding protein_coding MGP_AJ_T0023265.1 MGP_AJ_G0016698.1 mouse_genomes_project 1 166728104 166959076 - Pbx1 protein_coding retained_intron MGP_AJ_T0023266.1 MGP_AJ_G0016698.1 mouse_genomes_project 1 166951850 166959427 - Pbx1 protein_coding retained_intron MGP_AJ_T0020256.1 MGP_AJ_G0016086.1 mouse_genomes_project 1 62967783 62970150 - MGP_AJ_P0020256 Crygc protein_coding protein_coding MGP_AJ_T0020257.1 MGP_AJ_G0016086.1 mouse_genomes_project 1 62967789 62969982 - MGP_AJ_P0020257 Crygc protein_coding protein_coding MGP_AJ_T0021644.1 MGP_AJ_G0016368.1 mouse_genomes_project 1 114023501 114928048 + MGP_AJ_P0021644 Cntnap5a protein_coding protein_coding MGP_AJ_T0021645.1 MGP_AJ_G0016368.1 mouse_genomes_project 1 114023882 114921405 + MGP_AJ_P0021645 Cntnap5a protein_coding unknown_likely_coding MGP_AJ_T0020767.1 MGP_AJ_G0016175.1 mouse_genomes_project 1 73432400 73435690 + MGP_AJ_P0020767 Inha protein_coding protein_coding MGP_AJ_T0012118.1 MGP_AJ_G0010213.1 mouse_genomes_project 1 79690865 79691850 - processed_pseudogene processed_pseudogene MGP_AJ_T0009487.1 MGP_AJ_G0007609.1 mouse_genomes_project 1 45248710 45248815 - Mir6350 miRNA miRNA MGP_AJ_T0006066.1 MGP_AJ_G0005077.1 mouse_genomes_project 1 193896266 193896617 - Gm37027 lincRNA lincRNA MGP_AJ_T0099193.1 MGP_AJ_G0037159.1 mouse_genomes_project 1 116827730 116827855 - Gm22710 snRNA snRNA MGP_AJ_T0000569.1 MGP_AJ_G0000510.1 mouse_genomes_project 1 93984255 93986493 + TEC TEC MGP_AJ_T0011972.1 MGP_AJ_G0010067.1 mouse_genomes_project 1 34201764 34202109 + processed_pseudogene processed_pseudogene MGP_AJ_T0009500.1 MGP_AJ_G0007622.1 mouse_genomes_project 1 71821542 71821641 - Mir6351 miRNA miRNA MGP_AJ_T0019859.1 MGP_AJ_G0016015.1 mouse_genomes_project 1 52944426 52968359 + MGP_AJ_P0019859 Mob4 protein_coding protein_coding MGP_AJ_T0019860.1 MGP_AJ_G0016015.1 mouse_genomes_project 1 52944426 52967429 + MGP_AJ_P0019860 Mob4 protein_coding protein_coding MGP_AJ_T0019861.1 MGP_AJ_G0016015.1 mouse_genomes_project 1 52944455 52968358 + Mob4 protein_coding retained_intron MGP_AJ_T0019862.1 MGP_AJ_G0016015.1 mouse_genomes_project 1 52944477 52966490 + MGP_AJ_P0019862 Mob4 protein_coding protein_coding MGP_AJ_T0019863.1 MGP_AJ_G0016015.1 mouse_genomes_project 1 52944482 52966850 + MGP_AJ_P0019863 Mob4 protein_coding nonsense_mediated_decay MGP_AJ_T0019864.1 MGP_AJ_G0016015.1 mouse_genomes_project 1 52944515 52966274 + MGP_AJ_P0019864 Mob4 protein_coding protein_coding MGP_AJ_T0019865.1 MGP_AJ_G0016015.1 mouse_genomes_project 1 52944521 52958841 + Mob4 protein_coding retained_intron MGP_AJ_T0019866.1 MGP_AJ_G0016015.1 mouse_genomes_project 1 52961080 52961968 + Mob4 protein_coding retained_intron MGP_AJ_T0017020.1 MGP_AJ_G0015084.1 mouse_genomes_project 1 130910098 130921202 - 6030442K20Rik processed_transcript antisense MGP_AJ_T0017021.1 MGP_AJ_G0015084.1 mouse_genomes_project 1 130920215 130921221 - 6030442K20Rik processed_transcript retained_intron MGP_AJ_T0022634.1 MGP_AJ_G0016576.1 mouse_genomes_project 1 151552325 151616959 - MGP_AJ_P0022634 Lamc2 protein_coding protein_coding MGP_AJ_T0022635.1 MGP_AJ_G0016576.1 mouse_genomes_project 1 151552325 151616559 - MGP_AJ_P0022635 Lamc2 protein_coding protein_coding MGP_AJ_T0022636.1 MGP_AJ_G0016576.1 mouse_genomes_project 1 151553742 151556804 - Lamc2 protein_coding retained_intron MGP_AJ_T0022637.1 MGP_AJ_G0016576.1 mouse_genomes_project 1 151555667 151558572 - MGP_AJ_P0022637 Lamc2 protein_coding protein_coding MGP_AJ_T0022638.1 MGP_AJ_G0016576.1 mouse_genomes_project 1 151579704 151581591 - Lamc2 protein_coding retained_intron MGP_AJ_T0022639.1 MGP_AJ_G0016576.1 mouse_genomes_project 1 151586813 151616959 - Lamc2 protein_coding retained_intron MGP_AJ_T0000684.1 MGP_AJ_G0000623.1 mouse_genomes_project 1 152349381 152351938 - TEC TEC MGP_AJ_T0000621.1 MGP_AJ_G0000562.1 mouse_genomes_project 1 128914344 128915892 + TEC TEC MGP_AJ_T0020120.1 MGP_AJ_G0016059.1 mouse_genomes_project 1 58264407 58294256 + Cyp20a1 protein_coding retained_intron MGP_AJ_T0020121.1 MGP_AJ_G0016059.1 mouse_genomes_project 1 58264407 58310401 + MGP_AJ_P0020121 Cyp20a1 protein_coding protein_coding MGP_AJ_T0020122.1 MGP_AJ_G0016059.1 mouse_genomes_project 1 58264407 58310401 + MGP_AJ_P0020122 Cyp20a1 protein_coding nonsense_mediated_decay MGP_AJ_T0023975.1 MGP_AJ_G0016876.1 mouse_genomes_project 1 181677114 181679169 - MGP_AJ_P0023975 Ccdc185 protein_coding protein_coding MGP_AJ_T0011909.1 MGP_AJ_G0010004.1 mouse_genomes_project 1 17841982 17843113 - processed_pseudogene processed_pseudogene MGP_AJ_T0012210.1 MGP_AJ_G0010305.1 mouse_genomes_project 1 117870276 117870669 + processed_pseudogene processed_pseudogene MGP_AJ_T0011245.1 MGP_AJ_G0009367.1 mouse_genomes_project 1 48335859 48336173 + Gm25843 misc_RNA misc_RNA MGP_AJ_T0100488.1 MGP_AJ_G0038454.1 mouse_genomes_project 1 163956625 163956710 + Gm24637 snoRNA snoRNA MGP_AJ_T0000608.1 MGP_AJ_G0000549.1 mouse_genomes_project 1 125745523 125746066 + TEC TEC MGP_AJ_T0100418.1 MGP_AJ_G0038384.1 mouse_genomes_project 1 37224568 37224678 - Snord89 snoRNA snoRNA MGP_AJ_T0020146.1 MGP_AJ_G0016063.1 mouse_genomes_project 1 58802074 58828714 + Ctla4 protein_coding processed_transcript MGP_AJ_T0020147.1 MGP_AJ_G0016063.1 mouse_genomes_project 1 58825022 58831826 + MGP_AJ_P0020147 Ctla4 protein_coding protein_coding MGP_AJ_T0020148.1 MGP_AJ_G0016063.1 mouse_genomes_project 1 58825168 58830763 + MGP_AJ_P0020148 Ctla4 protein_coding protein_coding MGP_AJ_T0102152.1 MGP_AJ_G0039895.1 mouse_genomes_project 1 63313858 63314538 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0002850.1 MGP_AJ_G0002692.1 mouse_genomes_project 1 89498237 89514359 - Gm17090 antisense antisense MGP_AJ_T0002847.1 MGP_AJ_G0002689.1 mouse_genomes_project 1 85297406 85298100 - Efhd1os antisense antisense MGP_AJ_T0011953.1 MGP_AJ_G0010048.1 mouse_genomes_project 1 30953750 30956018 + processed_pseudogene processed_pseudogene MGP_AJ_T0012037.1 MGP_AJ_G0010132.1 mouse_genomes_project 1 53153308 53153704 + processed_pseudogene processed_pseudogene MGP_AJ_T0023594.1 MGP_AJ_G0016775.1 mouse_genomes_project 1 171283693 171285581 + MGP_AJ_P0023594 Crp protein_coding protein_coding MGP_AJ_T0023595.1 MGP_AJ_G0016775.1 mouse_genomes_project 1 171283694 171409695 + Crp protein_coding processed_transcript MGP_AJ_T0000578.1 MGP_AJ_G0000519.1 mouse_genomes_project 1 104247158 104250342 - TEC TEC MGP_AJ_T0098878.1 MGP_AJ_G0036861.1 mouse_genomes_project 1 136445616 136446862 + Gm26930 sense_intronic sense_intronic MGP_AJ_T0009531.1 MGP_AJ_G0007653.1 mouse_genomes_project 1 130641174 130641271 + Mir135b miRNA miRNA MGP_AJ_T0011946.1 MGP_AJ_G0010041.1 mouse_genomes_project 1 28835332 28837093 + processed_pseudogene processed_pseudogene MGP_AJ_T0000526.1 MGP_AJ_G0000467.1 mouse_genomes_project 1 78203974 78205141 - TEC TEC MGP_AJ_T0011242.1 MGP_AJ_G0009364.1 mouse_genomes_project 1 35621591 35621828 + Gm23409 misc_RNA misc_RNA MGP_AJ_T0011941.1 MGP_AJ_G0010036.1 mouse_genomes_project 1 28506618 28522426 - processed_pseudogene processed_pseudogene MGP_AJ_T0022209.1 MGP_AJ_G0016493.1 mouse_genomes_project 1 133004914 133013519 - MGP_AJ_P0022209 Mgat4e protein_coding protein_coding MGP_AJ_T0022210.1 MGP_AJ_G0016493.1 mouse_genomes_project 1 133004920 133010937 - MGP_AJ_P0022210 Mgat4e protein_coding protein_coding MGP_AJ_T0022211.1 MGP_AJ_G0016493.1 mouse_genomes_project 1 133004930 133010865 - MGP_AJ_P0022211 Mgat4e protein_coding nonsense_mediated_decay MGP_AJ_T0102167.1 MGP_AJ_G0039910.1 mouse_genomes_project 1 90805009 90805055 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0023598.1 MGP_AJ_G0016778.1 mouse_genomes_project 1 171699281 171700318 - MGP_AJ_P0023598 Olfr1408 protein_coding protein_coding MGP_AJ_T0023599.1 MGP_AJ_G0016778.1 mouse_genomes_project 1 171699281 171706403 - MGP_AJ_P0023599 Olfr1408 protein_coding protein_coding MGP_AJ_T0005933.1 MGP_AJ_G0004973.1 mouse_genomes_project 1 146585119 146598981 - Gm29515 lincRNA lincRNA MGP_AJ_T0024019.1 MGP_AJ_G0016884.1 mouse_genomes_project 1 182309143 182309752 + Hhipl2 protein_coding processed_transcript MGP_AJ_T0024020.1 MGP_AJ_G0016884.1 mouse_genomes_project 1 182309384 182329907 + MGP_AJ_P0024020 Hhipl2 protein_coding protein_coding MGP_AJ_T0024021.1 MGP_AJ_G0016884.1 mouse_genomes_project 1 182309481 182315527 + Hhipl2 protein_coding processed_transcript MGP_AJ_T0024022.1 MGP_AJ_G0016884.1 mouse_genomes_project 1 182309686 182329586 + MGP_AJ_P0024022 Hhipl2 protein_coding protein_coding MGP_AJ_T0020344.1 MGP_AJ_G0016103.1 mouse_genomes_project 1 65948606 67006167 - MGP_AJ_P0020344 Erbb4 protein_coding protein_coding MGP_AJ_T0020345.1 MGP_AJ_G0016103.1 mouse_genomes_project 1 65948606 67006470 - MGP_AJ_P0020345 Erbb4 protein_coding protein_coding MGP_AJ_T0020346.1 MGP_AJ_G0016103.1 mouse_genomes_project 1 65956466 66630228 - MGP_AJ_P0020346 Erbb4 protein_coding unknown_likely_coding MGP_AJ_T0020347.1 MGP_AJ_G0016103.1 mouse_genomes_project 1 65956466 66630820 - MGP_AJ_P0020347 Erbb4 protein_coding unknown_likely_coding MGP_AJ_T0020348.1 MGP_AJ_G0016103.1 mouse_genomes_project 1 66161564 67006167 - MGP_AJ_P0020348 Erbb4 protein_coding protein_coding MGP_AJ_T0020349.1 MGP_AJ_G0016103.1 mouse_genomes_project 1 66196031 66204254 - Erbb4 protein_coding processed_transcript MGP_AJ_T0020350.1 MGP_AJ_G0016103.1 mouse_genomes_project 1 66204085 66235801 - Erbb4 protein_coding retained_intron MGP_AJ_T0006041.1 MGP_AJ_G0005056.1 mouse_genomes_project 1 184615236 184628320 + Gm38093 lincRNA lincRNA MGP_AJ_T0023478.1 MGP_AJ_G0016748.1 mouse_genomes_project 1 170254107 170275715 + MGP_AJ_P0023478 Cd48 protein_coding protein_coding MGP_AJ_T0023479.1 MGP_AJ_G0016748.1 mouse_genomes_project 1 170254108 170275713 + MGP_AJ_P0023479 Cd48 protein_coding protein_coding MGP_AJ_T0011262.1 MGP_AJ_G0009384.1 mouse_genomes_project 1 190100148 190100256 + Gm24748 misc_RNA misc_RNA MGP_AJ_T0000506.1 MGP_AJ_G0000447.1 mouse_genomes_project 1 66490327 66492391 - TEC TEC MGP_AJ_T0005877.1 MGP_AJ_G0004928.1 mouse_genomes_project 1 117900107 117906793 - 3830432H09Rik lincRNA lincRNA MGP_AJ_T0005878.1 MGP_AJ_G0004928.1 mouse_genomes_project 1 117900920 117905873 - 3830432H09Rik lincRNA lincRNA MGP_AJ_T0022097.1 MGP_AJ_G0016465.1 mouse_genomes_project 1 131767311 131780421 + MGP_AJ_P0022097 Golt1a protein_coding protein_coding MGP_AJ_T0022102.1 MGP_AJ_G0016465.1 mouse_genomes_project 1 131767401 131778445 + MGP_AJ_P0022102 Golt1a protein_coding protein_coding MGP_AJ_T0005728.1 MGP_AJ_G0004811.1 mouse_genomes_project 1 49479233 49480810 - Gm28055 lincRNA lincRNA MGP_AJ_T0005729.1 MGP_AJ_G0004811.1 mouse_genomes_project 1 49480034 49524096 - Gm28055 lincRNA lincRNA MGP_AJ_T0102202.1 MGP_AJ_G0039945.1 mouse_genomes_project 1 172914338 172915718 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0020587.1 MGP_AJ_G0016153.1 mouse_genomes_project 1 73046341 73054696 - MGP_AJ_P0020587 Slc23a3 protein_coding protein_coding MGP_AJ_T0020588.1 MGP_AJ_G0016153.1 mouse_genomes_project 1 73052517 73054352 - Slc23a3 protein_coding retained_intron MGP_AJ_T0019609.1 MGP_AJ_G0015969.1 mouse_genomes_project 1 41757532 41763517 - MGP_AJ_P0019609 Gm8251 protein_coding protein_coding MGP_AJ_T0020506.1 MGP_AJ_G0016136.1 mouse_genomes_project 1 72480381 72505055 + MGP_AJ_P0020506 Cnot9 protein_coding protein_coding MGP_AJ_T0020507.1 MGP_AJ_G0016136.1 mouse_genomes_project 1 72480383 72501304 + Cnot9 protein_coding processed_transcript MGP_AJ_T0020508.1 MGP_AJ_G0016136.1 mouse_genomes_project 1 72497743 72502390 + Cnot9 protein_coding retained_intron MGP_AJ_T0005973.1 MGP_AJ_G0005004.1 mouse_genomes_project 1 163152738 163177536 - lincRNA lincRNA MGP_AJ_T0023205.1 MGP_AJ_G0016681.1 mouse_genomes_project 1 164627215 164656892 - MGP_AJ_P0023205 Dusp27 protein_coding protein_coding MGP_AJ_T0023206.1 MGP_AJ_G0016681.1 mouse_genomes_project 1 164627220 164656866 - MGP_AJ_P0023206 Dusp27 protein_coding protein_coding MGP_AJ_T0012224.1 MGP_AJ_G0010319.1 mouse_genomes_project 1 121566482 121566599 + processed_pseudogene processed_pseudogene MGP_AJ_T0019492.1 MGP_AJ_G0015942.1 mouse_genomes_project 1 37210681 37222712 + MGP_AJ_P0019492 Cnot11 protein_coding protein_coding MGP_AJ_T0019493.1 MGP_AJ_G0015942.1 mouse_genomes_project 1 37211491 37222696 + MGP_AJ_P0019493 Cnot11 protein_coding protein_coding MGP_AJ_T0019494.1 MGP_AJ_G0015942.1 mouse_genomes_project 1 37213934 37222186 + Cnot11 protein_coding retained_intron MGP_AJ_T0019495.1 MGP_AJ_G0015942.1 mouse_genomes_project 1 37215729 37221104 + MGP_AJ_P0019495 Cnot11 protein_coding protein_coding MGP_AJ_T0009476.1 MGP_AJ_G0007598.1 mouse_genomes_project 1 26893003 26893128 + Mir6342 miRNA miRNA MGP_AJ_T0005912.1 MGP_AJ_G0004957.1 mouse_genomes_project 1 134755724 134758537 + A430034D21Rik lincRNA lincRNA MGP_AJ_T0021060.1 MGP_AJ_G0016237.1 mouse_genomes_project 1 85156832 85159008 + Akp3 protein_coding retained_intron MGP_AJ_T0021061.1 MGP_AJ_G0016237.1 mouse_genomes_project 1 85156867 85159772 + MGP_AJ_P0021061 Akp3 protein_coding protein_coding MGP_AJ_T0009527.1 MGP_AJ_G0007649.1 mouse_genomes_project 1 114738416 114738488 - Gm23393 miRNA miRNA MGP_AJ_T0020879.1 MGP_AJ_G0016201.1 mouse_genomes_project 1 80677488 80705075 + MGP_AJ_P0020879 Mff protein_coding protein_coding MGP_AJ_T0020880.1 MGP_AJ_G0016201.1 mouse_genomes_project 1 80677568 80688159 + Mff protein_coding processed_transcript MGP_AJ_T0020881.1 MGP_AJ_G0016201.1 mouse_genomes_project 1 80677569 80705062 + MGP_AJ_P0020881 Mff protein_coding protein_coding MGP_AJ_T0020882.1 MGP_AJ_G0016201.1 mouse_genomes_project 1 80677575 80705065 + MGP_AJ_P0020882 Mff protein_coding protein_coding MGP_AJ_T0020883.1 MGP_AJ_G0016201.1 mouse_genomes_project 1 80677584 80689380 + Mff protein_coding retained_intron MGP_AJ_T0020884.1 MGP_AJ_G0016201.1 mouse_genomes_project 1 80677598 80705069 + MGP_AJ_P0020884 Mff protein_coding protein_coding MGP_AJ_T0020885.1 MGP_AJ_G0016201.1 mouse_genomes_project 1 80681923 80704302 + MGP_AJ_P0020885 Mff protein_coding protein_coding MGP_AJ_T0020886.1 MGP_AJ_G0016201.1 mouse_genomes_project 1 80681977 80694534 + MGP_AJ_P0020886 Mff protein_coding protein_coding MGP_AJ_T0020887.1 MGP_AJ_G0016201.1 mouse_genomes_project 1 80681977 80703242 + MGP_AJ_P0020887 Mff protein_coding protein_coding MGP_AJ_T0020888.1 MGP_AJ_G0016201.1 mouse_genomes_project 1 80688121 80704833 + MGP_AJ_P0020888 Mff protein_coding protein_coding MGP_AJ_T0020889.1 MGP_AJ_G0016201.1 mouse_genomes_project 1 80694288 80704380 + Mff protein_coding retained_intron MGP_AJ_T0020890.1 MGP_AJ_G0016201.1 mouse_genomes_project 1 80694627 80698545 + Mff protein_coding retained_intron MGP_AJ_T0020891.1 MGP_AJ_G0016201.1 mouse_genomes_project 1 80699572 80704561 + Mff protein_coding retained_intron MGP_AJ_T0020892.1 MGP_AJ_G0016201.1 mouse_genomes_project 1 80701049 80704389 + Mff protein_coding retained_intron MGP_AJ_T0098811.1 MGP_AJ_G0036795.1 mouse_genomes_project 1 85813376 85813641 + Scarna6 scaRNA scaRNA MGP_AJ_T0019014.1 MGP_AJ_G0015842.1 mouse_genomes_project 1 14483199 14502634 + MGP_AJ_P0019014 Gdap1 protein_coding protein_coding MGP_AJ_T0019015.1 MGP_AJ_G0015842.1 mouse_genomes_project 1 14483241 14497112 + Gdap1 protein_coding retained_intron MGP_AJ_T0019016.1 MGP_AJ_G0015842.1 mouse_genomes_project 1 14483305 14499994 + MGP_AJ_P0019016 Gdap1 protein_coding nonsense_mediated_decay MGP_AJ_T0019017.1 MGP_AJ_G0015842.1 mouse_genomes_project 1 14496737 14500412 + Gdap1 protein_coding retained_intron MGP_AJ_T0005926.1 MGP_AJ_G0004967.1 mouse_genomes_project 1 136480135 136483553 + A430106G13Rik lincRNA lincRNA MGP_AJ_T0003006.1 MGP_AJ_G0002812.1 mouse_genomes_project 1 193832478 193854679 - Gm16897 antisense antisense MGP_AJ_T0019934.1 MGP_AJ_G0016030.1 mouse_genomes_project 1 56035059 56094188 + MGP_AJ_P0019934 Aox4 protein_coding protein_coding MGP_AJ_T0019935.1 MGP_AJ_G0016030.1 mouse_genomes_project 1 56035094 56085985 + Aox4 protein_coding processed_transcript MGP_AJ_T0019936.1 MGP_AJ_G0016030.1 mouse_genomes_project 1 56035113 56040073 + Aox4 protein_coding processed_transcript MGP_AJ_T0019937.1 MGP_AJ_G0016030.1 mouse_genomes_project 1 56035880 56038025 + Aox4 protein_coding retained_intron MGP_AJ_T0019938.1 MGP_AJ_G0016030.1 mouse_genomes_project 1 56065815 56070351 + Aox4 protein_coding retained_intron MGP_AJ_T0021978.1 MGP_AJ_G0016442.1 mouse_genomes_project 1 130236590 130260682 + MGP_AJ_P0021978 Pm20d1 protein_coding protein_coding MGP_AJ_T0021979.1 MGP_AJ_G0016442.1 mouse_genomes_project 1 130236607 130260694 + MGP_AJ_P0021979 Pm20d1 protein_coding protein_coding MGP_AJ_T0021980.1 MGP_AJ_G0016442.1 mouse_genomes_project 1 130251339 130255599 + MGP_AJ_P0021980 Pm20d1 protein_coding protein_coding MGP_AJ_T0021981.1 MGP_AJ_G0016442.1 mouse_genomes_project 1 130251377 130251615 + Pm20d1 protein_coding processed_transcript MGP_AJ_T0017081.1 MGP_AJ_G0015099.1 mouse_genomes_project 1 170248779 170254031 - A630035G10Rik processed_transcript lincRNA MGP_AJ_T0017082.1 MGP_AJ_G0015099.1 mouse_genomes_project 1 170252216 170254079 - A630035G10Rik processed_transcript retained_intron MGP_AJ_T0000715.1 MGP_AJ_G0000654.1 mouse_genomes_project 1 159396145 159397054 + TEC TEC MGP_AJ_T0023926.1 MGP_AJ_G0016867.1 mouse_genomes_project 1 180732610 180761742 - MGP_AJ_P0023926 Lbr protein_coding protein_coding MGP_AJ_T0023927.1 MGP_AJ_G0016867.1 mouse_genomes_project 1 180732631 180737816 - Lbr protein_coding retained_intron MGP_AJ_T0023928.1 MGP_AJ_G0016867.1 mouse_genomes_project 1 180737153 180746910 - MGP_AJ_P0023928 Lbr protein_coding protein_coding MGP_AJ_T0023929.1 MGP_AJ_G0016867.1 mouse_genomes_project 1 180738829 180747178 - Lbr protein_coding retained_intron MGP_AJ_T0023930.1 MGP_AJ_G0016867.1 mouse_genomes_project 1 180755485 180762418 - MGP_AJ_P0023930 Lbr protein_coding protein_coding MGP_AJ_T0023931.1 MGP_AJ_G0016867.1 mouse_genomes_project 1 180755514 180761724 - MGP_AJ_P0023931 Lbr protein_coding protein_coding MGP_AJ_T0023932.1 MGP_AJ_G0016867.1 mouse_genomes_project 1 180755665 180762231 - MGP_AJ_P0023932 Lbr protein_coding protein_coding MGP_AJ_T0023933.1 MGP_AJ_G0016867.1 mouse_genomes_project 1 180757832 180761689 - MGP_AJ_P0023933 Lbr protein_coding protein_coding MGP_AJ_T0011930.1 MGP_AJ_G0010025.1 mouse_genomes_project 1 24749219 24749636 - processed_pseudogene processed_pseudogene MGP_AJ_T0020910.1 MGP_AJ_G0016207.1 mouse_genomes_project 1 81135713 81159352 + Daw1 protein_coding retained_intron MGP_AJ_T0020911.1 MGP_AJ_G0016207.1 mouse_genomes_project 1 81135723 81190189 + MGP_AJ_P0020911 Daw1 protein_coding protein_coding MGP_AJ_T0020912.1 MGP_AJ_G0016207.1 mouse_genomes_project 1 81135723 81190183 + MGP_AJ_P0020912 Daw1 protein_coding protein_coding MGP_AJ_T0020913.1 MGP_AJ_G0016207.1 mouse_genomes_project 1 81135730 81190185 + MGP_AJ_P0020913 Daw1 protein_coding nonsense_mediated_decay MGP_AJ_T0020914.1 MGP_AJ_G0016207.1 mouse_genomes_project 1 81135742 81190189 + MGP_AJ_P0020914 Daw1 protein_coding protein_coding MGP_AJ_T0000477.1 MGP_AJ_G0000418.1 mouse_genomes_project 1 56660142 56663983 + TEC TEC MGP_AJ_T0022100.1 MGP_AJ_G0016467.1 mouse_genomes_project 1 131767338 131787140 + MGP_AJ_P0022100 protein_coding protein_coding MGP_AJ_T0022101.1 MGP_AJ_G0016467.1 mouse_genomes_project 1 131767338 131787347 + MGP_AJ_P0022101 protein_coding nonsense_mediated_decay MGP_AJ_T0022103.1 MGP_AJ_G0016467.1 mouse_genomes_project 1 131779269 131787347 + MGP_AJ_P0022103 protein_coding protein_coding MGP_AJ_T0022105.1 MGP_AJ_G0016467.1 mouse_genomes_project 1 131784657 131787168 + MGP_AJ_P0022105 protein_coding protein_coding MGP_AJ_T0024072.1 MGP_AJ_G0016898.1 mouse_genomes_project 1 185504632 185588687 - MGP_AJ_P0024072 Tgfb2 protein_coding protein_coding MGP_AJ_T0024073.1 MGP_AJ_G0016898.1 mouse_genomes_project 1 185506058 185588395 - MGP_AJ_P0024073 Tgfb2 protein_coding protein_coding MGP_AJ_T0024074.1 MGP_AJ_G0016898.1 mouse_genomes_project 1 185507420 185531576 - Tgfb2 protein_coding retained_intron MGP_AJ_T0024075.1 MGP_AJ_G0016898.1 mouse_genomes_project 1 185510575 185531642 - Tgfb2 protein_coding retained_intron MGP_AJ_T0024076.1 MGP_AJ_G0016898.1 mouse_genomes_project 1 185514451 185550566 - Tgfb2 protein_coding processed_transcript MGP_AJ_T0024077.1 MGP_AJ_G0016898.1 mouse_genomes_project 1 185573067 185586847 - Tgfb2 protein_coding processed_transcript MGP_AJ_T0009529.1 MGP_AJ_G0007651.1 mouse_genomes_project 1 126531247 126531317 + Mir128-1 miRNA miRNA MGP_AJ_T0019823.1 MGP_AJ_G0016009.1 mouse_genomes_project 1 52269448 52357864 - MGP_AJ_P0019823 Pgap1 protein_coding protein_coding MGP_AJ_T0019824.1 MGP_AJ_G0016009.1 mouse_genomes_project 1 52324387 52357866 - Pgap1 protein_coding retained_intron MGP_AJ_T0019825.1 MGP_AJ_G0016009.1 mouse_genomes_project 1 52326406 52329653 - Pgap1 protein_coding retained_intron MGP_AJ_T0019826.1 MGP_AJ_G0016009.1 mouse_genomes_project 1 52354784 52357809 - Pgap1 protein_coding retained_intron MGP_AJ_T0000765.1 MGP_AJ_G0000703.1 mouse_genomes_project 1 179349973 179353721 - TEC TEC MGP_AJ_T0102147.1 MGP_AJ_G0039890.1 mouse_genomes_project 1 49914589 49915477 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0000637.1 MGP_AJ_G0000577.1 mouse_genomes_project 1 133985690 133986711 - TEC TEC MGP_AJ_T0021924.1 MGP_AJ_G0016429.1 mouse_genomes_project 1 129370810 129378256 - MGP_AJ_P0021924 Il19 protein_coding protein_coding MGP_AJ_T0021925.1 MGP_AJ_G0016429.1 mouse_genomes_project 1 129370812 129377396 - MGP_AJ_P0021925 Il19 protein_coding protein_coding MGP_AJ_T0021926.1 MGP_AJ_G0016429.1 mouse_genomes_project 1 129370970 129378270 - MGP_AJ_P0021926 Il19 protein_coding protein_coding MGP_AJ_T0021927.1 MGP_AJ_G0016429.1 mouse_genomes_project 1 129371012 129378228 - MGP_AJ_P0021927 Il19 protein_coding protein_coding MGP_AJ_T0009515.1 MGP_AJ_G0007637.1 mouse_genomes_project 1 84659137 84659194 - Gm22955 miRNA miRNA MGP_AJ_T0099184.1 MGP_AJ_G0037150.1 mouse_genomes_project 1 85376647 85376754 - Gm22549 snRNA snRNA MGP_AJ_T0019789.1 MGP_AJ_G0015999.1 mouse_genomes_project 1 51059787 51064646 + Ormdl1 protein_coding retained_intron MGP_AJ_T0019790.1 MGP_AJ_G0015999.1 mouse_genomes_project 1 51059787 51069877 + MGP_AJ_P0019790 Ormdl1 protein_coding protein_coding MGP_AJ_T0101920.1 MGP_AJ_G0039779.1 mouse_genomes_project 1 15391960 15415900 - transcribed_unprocessed_pseudogene processed_transcript MGP_AJ_T0101921.1 MGP_AJ_G0039779.1 mouse_genomes_project 1 15405220 15415379 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_AJ_T0009469.1 MGP_AJ_G0007591.1 mouse_genomes_project 1 9739204 9739325 + Mir6341 miRNA miRNA MGP_AJ_T0022113.1 MGP_AJ_G0016470.1 mouse_genomes_project 1 131840015 131850931 - MGP_AJ_P0022113 Sox13 protein_coding protein_coding MGP_AJ_T0022114.1 MGP_AJ_G0016470.1 mouse_genomes_project 1 131840015 131882092 - MGP_AJ_P0022114 Sox13 protein_coding protein_coding MGP_AJ_T0022115.1 MGP_AJ_G0016470.1 mouse_genomes_project 1 131841363 131850983 - MGP_AJ_P0022115 Sox13 protein_coding protein_coding MGP_AJ_T0022116.1 MGP_AJ_G0016470.1 mouse_genomes_project 1 131841690 131843239 - Sox13 protein_coding retained_intron MGP_AJ_T0022117.1 MGP_AJ_G0016470.1 mouse_genomes_project 1 131842249 131844147 - Sox13 protein_coding retained_intron MGP_AJ_T0000652.1 MGP_AJ_G0000591.1 mouse_genomes_project 1 136670974 136676840 - TEC TEC MGP_AJ_T0000612.1 MGP_AJ_G0000553.1 mouse_genomes_project 1 126471885 126474628 + TEC TEC MGP_AJ_T0011937.1 MGP_AJ_G0010032.1 mouse_genomes_project 1 26691544 26692094 + processed_pseudogene processed_pseudogene MGP_AJ_T0011957.1 MGP_AJ_G0010052.1 mouse_genomes_project 1 31566497 31566831 - processed_pseudogene processed_pseudogene MGP_AJ_T0002976.1 MGP_AJ_G0002790.1 mouse_genomes_project 1 185588389 185589719 + Gm29491 antisense antisense MGP_AJ_T0022157.1 MGP_AJ_G0016480.1 mouse_genomes_project 1 132540208 132544159 - MGP_AJ_P0022157 Btg2 protein_coding protein_coding MGP_AJ_T0011989.1 MGP_AJ_G0010084.1 mouse_genomes_project 1 41922402 41923499 + processed_pseudogene processed_pseudogene MGP_AJ_T0012245.1 MGP_AJ_G0010340.1 mouse_genomes_project 1 135015680 135016052 + processed_pseudogene processed_pseudogene MGP_AJ_T0021437.1 MGP_AJ_G0016322.1 mouse_genomes_project 1 91591775 91622027 + MGP_AJ_P0021437 Ano7 protein_coding protein_coding MGP_AJ_T0021438.1 MGP_AJ_G0016322.1 mouse_genomes_project 1 91591775 91621123 + MGP_AJ_P0021438 Ano7 protein_coding protein_coding MGP_AJ_T0021439.1 MGP_AJ_G0016322.1 mouse_genomes_project 1 91619580 91621293 + MGP_AJ_P0021439 Ano7 protein_coding protein_coding MGP_AJ_T0012214.1 MGP_AJ_G0010309.1 mouse_genomes_project 1 118274243 118274907 + processed_pseudogene processed_pseudogene MGP_AJ_T0012060.1 MGP_AJ_G0010155.1 mouse_genomes_project 1 58864624 58864860 - processed_pseudogene processed_pseudogene MGP_AJ_T0022219.1 MGP_AJ_G0016495.1 mouse_genomes_project 1 133119799 133220572 + MGP_AJ_P0022219 protein_coding protein_coding MGP_AJ_T0022220.1 MGP_AJ_G0016495.1 mouse_genomes_project 1 133216538 133231852 + MGP_AJ_P0022220 protein_coding unknown_likely_coding MGP_AJ_T0022221.1 MGP_AJ_G0016495.1 mouse_genomes_project 1 133227286 133241305 + protein_coding processed_transcript MGP_AJ_T0011986.1 MGP_AJ_G0010081.1 mouse_genomes_project 1 41589919 41590464 + processed_pseudogene processed_pseudogene MGP_AJ_T0019656.1 MGP_AJ_G0015977.1 mouse_genomes_project 1 43053998 43183662 - MGP_AJ_P0019656 Col5a2 protein_coding protein_coding MGP_AJ_T0019657.1 MGP_AJ_G0015977.1 mouse_genomes_project 1 43068694 43073300 - Col5a2 protein_coding retained_intron MGP_AJ_T0019658.1 MGP_AJ_G0015977.1 mouse_genomes_project 1 43093612 43183662 - Col5a2 protein_coding retained_intron MGP_AJ_T0019659.1 MGP_AJ_G0015977.1 mouse_genomes_project 1 43097157 43102091 - Col5a2 protein_coding retained_intron MGP_AJ_T0024198.1 MGP_AJ_G0016922.1 mouse_genomes_project 1 190230132 190255146 + MGP_AJ_P0024198 Tmem206 protein_coding protein_coding MGP_AJ_T0024050.1 MGP_AJ_G0016893.1 mouse_genomes_project 1 184160358 184204140 - MGP_AJ_P0024050 Iars2 protein_coding protein_coding MGP_AJ_T0024051.1 MGP_AJ_G0016893.1 mouse_genomes_project 1 184161201 184163919 - Iars2 protein_coding processed_transcript MGP_AJ_T0024052.1 MGP_AJ_G0016893.1 mouse_genomes_project 1 184170680 184204140 - MGP_AJ_P0024052 Iars2 protein_coding protein_coding MGP_AJ_T0024053.1 MGP_AJ_G0016893.1 mouse_genomes_project 1 184187186 184204140 - MGP_AJ_P0024053 Iars2 protein_coding protein_coding MGP_AJ_T0024054.1 MGP_AJ_G0016893.1 mouse_genomes_project 1 184195878 184204140 - Iars2 protein_coding retained_intron MGP_AJ_T0005975.1 MGP_AJ_G0005006.1 mouse_genomes_project 1 163213020 163219834 - Gm36945 lincRNA lincRNA MGP_AJ_T0005976.1 MGP_AJ_G0005006.1 mouse_genomes_project 1 163213197 163219862 - Gm36945 lincRNA lincRNA MGP_AJ_T0022330.1 MGP_AJ_G0016516.1 mouse_genomes_project 1 134513266 134540098 + MGP_AJ_P0022330 Tmem9 protein_coding protein_coding MGP_AJ_T0022331.1 MGP_AJ_G0016516.1 mouse_genomes_project 1 134523053 134541173 + MGP_AJ_P0022331 Tmem9 protein_coding protein_coding MGP_AJ_T0022332.1 MGP_AJ_G0016516.1 mouse_genomes_project 1 134523148 134540123 + MGP_AJ_P0022332 Tmem9 protein_coding protein_coding MGP_AJ_T0022333.1 MGP_AJ_G0016516.1 mouse_genomes_project 1 134532837 134540230 + Tmem9 protein_coding retained_intron MGP_AJ_T0022334.1 MGP_AJ_G0016516.1 mouse_genomes_project 1 134539102 134540611 + Tmem9 protein_coding processed_transcript MGP_AJ_T0022716.1 MGP_AJ_G0016593.1 mouse_genomes_project 1 153692813 153694324 - BC034090 protein_coding retained_intron MGP_AJ_T0022717.1 MGP_AJ_G0016593.1 mouse_genomes_project 1 153693862 153724368 - MGP_AJ_P0022717 BC034090 protein_coding protein_coding MGP_AJ_T0022718.1 MGP_AJ_G0016593.1 mouse_genomes_project 1 153697863 153705610 - BC034090 protein_coding processed_transcript MGP_AJ_T0022719.1 MGP_AJ_G0016593.1 mouse_genomes_project 1 153698613 153705359 - BC034090 protein_coding processed_transcript MGP_AJ_T0022720.1 MGP_AJ_G0016593.1 mouse_genomes_project 1 153705874 153710079 - BC034090 protein_coding processed_transcript MGP_AJ_T0022721.1 MGP_AJ_G0016593.1 mouse_genomes_project 1 153706224 153713096 - MGP_AJ_P0022721 BC034090 protein_coding protein_coding MGP_AJ_T0022722.1 MGP_AJ_G0016593.1 mouse_genomes_project 1 153706308 153721045 - BC034090 protein_coding retained_intron MGP_AJ_T0022723.1 MGP_AJ_G0016593.1 mouse_genomes_project 1 153709298 153712089 - BC034090 protein_coding retained_intron MGP_AJ_T0100473.1 MGP_AJ_G0038439.1 mouse_genomes_project 1 158456420 158456530 - Gm24719 snoRNA snoRNA MGP_AJ_T0005850.1 MGP_AJ_G0004907.1 mouse_genomes_project 1 94809380 94823017 - Gm29601 lincRNA lincRNA MGP_AJ_T0000655.1 MGP_AJ_G0000594.1 mouse_genomes_project 1 137070856 137074516 - TEC TEC MGP_AJ_T0012081.1 MGP_AJ_G0010176.1 mouse_genomes_project 1 63325743 63326065 - processed_pseudogene processed_pseudogene MGP_AJ_T0000472.1 MGP_AJ_G0000413.1 mouse_genomes_project 1 52856799 52858593 - TEC TEC MGP_AJ_T0005762.1 MGP_AJ_G0004836.1 mouse_genomes_project 1 61933970 61937436 + Gm26649 lincRNA lincRNA MGP_AJ_T0022052.1 MGP_AJ_G0016457.1 mouse_genomes_project 1 130950262 130952672 + MGP_AJ_P0022052 Tmem81 protein_coding protein_coding MGP_AJ_T0022053.1 MGP_AJ_G0016457.1 mouse_genomes_project 1 130950921 130952672 + MGP_AJ_P0022053 Tmem81 protein_coding protein_coding MGP_AJ_T0006022.1 MGP_AJ_G0005043.1 mouse_genomes_project 1 182405663 182406197 + Gm33973 lincRNA lincRNA MGP_AJ_T0012083.1 MGP_AJ_G0010178.1 mouse_genomes_project 1 63417225 63417630 - processed_pseudogene processed_pseudogene MGP_AJ_T0102198.1 MGP_AJ_G0039941.1 mouse_genomes_project 1 172795921 172796459 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0098881.1 MGP_AJ_G0036864.1 mouse_genomes_project 1 151109533 151113013 - Gm15479 sense_intronic sense_intronic MGP_AJ_T0021307.1 MGP_AJ_G0016290.1 mouse_genomes_project 1 89605443 89607183 - Hes6 protein_coding retained_intron MGP_AJ_T0021308.1 MGP_AJ_G0016290.1 mouse_genomes_project 1 89605443 89607169 - Hes6 protein_coding retained_intron MGP_AJ_T0021309.1 MGP_AJ_G0016290.1 mouse_genomes_project 1 89605443 89607183 - MGP_AJ_P0021309 Hes6 protein_coding protein_coding MGP_AJ_T0021310.1 MGP_AJ_G0016290.1 mouse_genomes_project 1 89606247 89607169 - Hes6 protein_coding retained_intron MGP_AJ_T0021311.1 MGP_AJ_G0016290.1 mouse_genomes_project 1 89606308 89607999 - Hes6 protein_coding processed_transcript MGP_AJ_T0023073.1 MGP_AJ_G0016654.1 mouse_genomes_project 1 162276920 162422622 + MGP_AJ_P0023073 Kifap3 protein_coding protein_coding MGP_AJ_T0023074.1 MGP_AJ_G0016654.1 mouse_genomes_project 1 162276920 162422622 + MGP_AJ_P0023074 Kifap3 protein_coding protein_coding MGP_AJ_T0000446.1 MGP_AJ_G0000387.1 mouse_genomes_project 1 34957988 34958522 - TEC TEC MGP_AJ_T0020456.1 MGP_AJ_G0016128.1 mouse_genomes_project 1 72246864 72252252 - MGP_AJ_P0020456 Aamp protein_coding protein_coding MGP_AJ_T0020457.1 MGP_AJ_G0016128.1 mouse_genomes_project 1 72246870 72251530 - Aamp protein_coding retained_intron MGP_AJ_T0020458.1 MGP_AJ_G0016128.1 mouse_genomes_project 1 72246870 72252194 - MGP_AJ_P0020458 Aamp protein_coding protein_coding MGP_AJ_T0020459.1 MGP_AJ_G0016128.1 mouse_genomes_project 1 72247957 72251493 - MGP_AJ_P0020459 Aamp protein_coding protein_coding MGP_AJ_T0020460.1 MGP_AJ_G0016128.1 mouse_genomes_project 1 72248084 72250167 - Aamp protein_coding retained_intron MGP_AJ_T0020461.1 MGP_AJ_G0016128.1 mouse_genomes_project 1 72250220 72251935 - MGP_AJ_P0020461 Aamp protein_coding protein_coding MGP_AJ_T0101688.1 MGP_AJ_G0039645.1 mouse_genomes_project 1 171028947 171053232 + transcribed_processed_pseudogene processed_transcript MGP_AJ_T0101689.1 MGP_AJ_G0039645.1 mouse_genomes_project 1 171052296 171053150 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0098509.1 MGP_AJ_G0036493.1 mouse_genomes_project 1 103255386 103255498 - n-R5s216 rRNA rRNA MGP_AJ_T0102182.1 MGP_AJ_G0039925.1 mouse_genomes_project 1 130347453 130348241 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0002967.1 MGP_AJ_G0002783.1 mouse_genomes_project 1 179701976 179705043 + H3f3aos antisense antisense MGP_AJ_T0002968.1 MGP_AJ_G0002783.1 mouse_genomes_project 1 179701984 179704872 + H3f3aos antisense antisense MGP_AJ_T0005990.1 MGP_AJ_G0005017.1 mouse_genomes_project 1 167818476 167836001 - Gm37839 lincRNA lincRNA MGP_AJ_T0005834.1 MGP_AJ_G0004892.1 mouse_genomes_project 1 88870231 88874864 + Gm9991 lincRNA lincRNA MGP_AJ_T0024229.1 MGP_AJ_G0016929.1 mouse_genomes_project 1 190883172 190894090 + MGP_AJ_P0024229 Rd3 protein_coding protein_coding MGP_AJ_T0024230.1 MGP_AJ_G0016929.1 mouse_genomes_project 1 190883175 190892195 + MGP_AJ_P0024230 Rd3 protein_coding protein_coding MGP_AJ_T0024231.1 MGP_AJ_G0016929.1 mouse_genomes_project 1 190884053 190892194 + MGP_AJ_P0024231 Rd3 protein_coding protein_coding MGP_AJ_T0024232.1 MGP_AJ_G0016929.1 mouse_genomes_project 1 190889972 190892195 + Rd3 protein_coding retained_intron MGP_AJ_T0021797.1 MGP_AJ_G0016401.1 mouse_genomes_project 1 124279846 125169408 - MGP_AJ_P0021797 Nckap5 protein_coding protein_coding MGP_AJ_T0021798.1 MGP_AJ_G0016401.1 mouse_genomes_project 1 124279846 124807095 - MGP_AJ_P0021798 Nckap5 protein_coding protein_coding MGP_AJ_T0021799.1 MGP_AJ_G0016401.1 mouse_genomes_project 1 124279846 125169408 - MGP_AJ_P0021799 Nckap5 protein_coding protein_coding MGP_AJ_T0021800.1 MGP_AJ_G0016401.1 mouse_genomes_project 1 124279857 124854411 - MGP_AJ_P0021800 Nckap5 protein_coding protein_coding MGP_AJ_T0021801.1 MGP_AJ_G0016401.1 mouse_genomes_project 1 124280529 124332129 - Nckap5 protein_coding processed_transcript MGP_AJ_T0021802.1 MGP_AJ_G0016401.1 mouse_genomes_project 1 124280951 124804000 - MGP_AJ_P0021802 Nckap5 protein_coding protein_coding MGP_AJ_T0021803.1 MGP_AJ_G0016401.1 mouse_genomes_project 1 124281168 124389895 - MGP_AJ_P0021803 Nckap5 protein_coding protein_coding MGP_AJ_T0021804.1 MGP_AJ_G0016401.1 mouse_genomes_project 1 124394658 124401984 - Nckap5 protein_coding processed_transcript MGP_AJ_T0021805.1 MGP_AJ_G0016401.1 mouse_genomes_project 1 124588140 125169575 - MGP_AJ_P0021805 Nckap5 protein_coding protein_coding MGP_AJ_T0021806.1 MGP_AJ_G0016401.1 mouse_genomes_project 1 124623720 125089643 - MGP_AJ_P0021806 Nckap5 protein_coding protein_coding MGP_AJ_T0021807.1 MGP_AJ_G0016401.1 mouse_genomes_project 1 124889293 125089631 - Nckap5 protein_coding retained_intron MGP_AJ_T0021808.1 MGP_AJ_G0016401.1 mouse_genomes_project 1 124891835 125169257 - Nckap5 protein_coding retained_intron MGP_AJ_T0023882.1 MGP_AJ_G0016856.1 mouse_genomes_project 1 179793018 179796816 + MGP_AJ_P0023882 Pycr2 protein_coding protein_coding MGP_AJ_T0023883.1 MGP_AJ_G0016856.1 mouse_genomes_project 1 179793034 179795348 + Pycr2 protein_coding retained_intron MGP_AJ_T0023884.1 MGP_AJ_G0016856.1 mouse_genomes_project 1 179793048 179796815 + Pycr2 protein_coding retained_intron MGP_AJ_T0023885.1 MGP_AJ_G0016856.1 mouse_genomes_project 1 179794643 179795631 + Pycr2 protein_coding retained_intron MGP_AJ_T0020984.1 MGP_AJ_G0016219.1 mouse_genomes_project 1 83940572 83963168 - MGP_AJ_P0020984 Gpr55 protein_coding protein_coding MGP_AJ_T0019756.1 MGP_AJ_G0015992.1 mouse_genomes_project 1 50427163 50493883 - MGP_AJ_P0019756 Mfsd6 protein_coding protein_coding MGP_AJ_T0019757.1 MGP_AJ_G0015992.1 mouse_genomes_project 1 50427175 50493551 - MGP_AJ_P0019757 Mfsd6 protein_coding protein_coding MGP_AJ_T0019758.1 MGP_AJ_G0015992.1 mouse_genomes_project 1 50428312 50431176 - Mfsd6 protein_coding retained_intron MGP_AJ_T0019759.1 MGP_AJ_G0015992.1 mouse_genomes_project 1 50430863 50493883 - MGP_AJ_P0019759 Mfsd6 protein_coding protein_coding MGP_AJ_T0019760.1 MGP_AJ_G0015992.1 mouse_genomes_project 1 50431781 50440210 - Mfsd6 protein_coding processed_transcript MGP_AJ_T0019761.1 MGP_AJ_G0015992.1 mouse_genomes_project 1 50446481 50493779 - Mfsd6 protein_coding retained_intron MGP_AJ_T0020254.1 MGP_AJ_G0016085.1 mouse_genomes_project 1 62957857 62959440 - MGP_AJ_P0020254 Crygd protein_coding protein_coding MGP_AJ_T0020255.1 MGP_AJ_G0016085.1 mouse_genomes_project 1 62958718 62959440 - Crygd protein_coding retained_intron MGP_AJ_T0012057.1 MGP_AJ_G0010152.1 mouse_genomes_project 1 58723286 58724113 + processed_pseudogene processed_pseudogene MGP_AJ_T0024254.1 MGP_AJ_G0016933.1 mouse_genomes_project 1 191351547 191622357 - MGP_AJ_P0024254 Hhat protein_coding protein_coding MGP_AJ_T0024255.1 MGP_AJ_G0016933.1 mouse_genomes_project 1 191367668 191622367 - MGP_AJ_P0024255 Hhat protein_coding protein_coding MGP_AJ_T0024256.1 MGP_AJ_G0016933.1 mouse_genomes_project 1 191397928 191622362 - MGP_AJ_P0024256 Hhat protein_coding non_stop_decay MGP_AJ_T0024257.1 MGP_AJ_G0016933.1 mouse_genomes_project 1 191473422 191574220 - Hhat protein_coding processed_transcript MGP_AJ_T0024258.1 MGP_AJ_G0016933.1 mouse_genomes_project 1 191499157 191533493 - Hhat protein_coding processed_transcript MGP_AJ_T0024259.1 MGP_AJ_G0016933.1 mouse_genomes_project 1 191574208 191585491 - Hhat protein_coding processed_transcript MGP_AJ_T0024260.1 MGP_AJ_G0016933.1 mouse_genomes_project 1 191584621 191622136 - Hhat protein_coding processed_transcript MGP_AJ_T0005799.1 MGP_AJ_G0004862.1 mouse_genomes_project 1 75455361 75457211 + Gm28386 lincRNA lincRNA MGP_AJ_T0023602.1 MGP_AJ_G0016780.1 mouse_genomes_project 1 171771325 171772267 + MGP_AJ_P0023602 Olfr218 protein_coding protein_coding MGP_AJ_T0012041.1 MGP_AJ_G0010136.1 mouse_genomes_project 1 55338660 55339543 - processed_pseudogene processed_pseudogene MGP_AJ_T0020605.1 MGP_AJ_G0016156.1 mouse_genomes_project 1 73090433 73093411 + Zfand2b protein_coding retained_intron MGP_AJ_T0020606.1 MGP_AJ_G0016156.1 mouse_genomes_project 1 73090433 73093415 + MGP_AJ_P0020606 Zfand2b protein_coding protein_coding MGP_AJ_T0020607.1 MGP_AJ_G0016156.1 mouse_genomes_project 1 73090433 73092538 + MGP_AJ_P0020607 Zfand2b protein_coding protein_coding MGP_AJ_T0020608.1 MGP_AJ_G0016156.1 mouse_genomes_project 1 73090442 73093411 + MGP_AJ_P0020608 Zfand2b protein_coding protein_coding MGP_AJ_T0020609.1 MGP_AJ_G0016156.1 mouse_genomes_project 1 73090445 73091678 + Zfand2b protein_coding retained_intron MGP_AJ_T0020610.1 MGP_AJ_G0016156.1 mouse_genomes_project 1 73090453 73091417 + Zfand2b protein_coding retained_intron MGP_AJ_T0020611.1 MGP_AJ_G0016156.1 mouse_genomes_project 1 73090488 73092355 + Zfand2b protein_coding retained_intron MGP_AJ_T0020612.1 MGP_AJ_G0016156.1 mouse_genomes_project 1 73090565 73092473 + Zfand2b protein_coding retained_intron MGP_AJ_T0020613.1 MGP_AJ_G0016156.1 mouse_genomes_project 1 73090715 73093188 + MGP_AJ_P0020613 Zfand2b protein_coding protein_coding MGP_AJ_T0021184.1 MGP_AJ_G0016261.1 mouse_genomes_project 1 86312439 86334105 + MGP_AJ_P0021184 Ugt1a2 protein_coding protein_coding MGP_AJ_T0002982.1 MGP_AJ_G0002796.1 mouse_genomes_project 1 188228995 188230461 + A430027H14Rik antisense antisense MGP_AJ_T0002983.1 MGP_AJ_G0002796.1 mouse_genomes_project 1 188229548 188230437 + A430027H14Rik antisense antisense MGP_AJ_T0016975.1 MGP_AJ_G0015064.1 mouse_genomes_project 1 32071597 32073024 - Gm28417 processed_transcript retained_intron MGP_AJ_T0016976.1 MGP_AJ_G0015064.1 mouse_genomes_project 1 32072849 32076477 - Gm28417 processed_transcript antisense MGP_AJ_T0016977.1 MGP_AJ_G0015064.1 mouse_genomes_project 1 32074050 32076441 - Gm28417 processed_transcript antisense MGP_AJ_T0000513.1 MGP_AJ_G0000454.1 mouse_genomes_project 1 69734308 69737829 - TEC TEC MGP_AJ_T0021082.1 MGP_AJ_G0016243.1 mouse_genomes_project 1 85297288 85344874 + MGP_AJ_P0021082 Efhd1 protein_coding nonsense_mediated_decay MGP_AJ_T0021083.1 MGP_AJ_G0016243.1 mouse_genomes_project 1 85297288 85344877 + MGP_AJ_P0021083 Efhd1 protein_coding protein_coding MGP_AJ_T0021084.1 MGP_AJ_G0016243.1 mouse_genomes_project 1 85343263 85343780 + Efhd1 protein_coding processed_transcript MGP_AJ_T0021505.1 MGP_AJ_G0016335.1 mouse_genomes_project 1 92259197 92271338 + protein_coding processed_transcript MGP_AJ_T0021506.1 MGP_AJ_G0016335.1 mouse_genomes_project 1 92259236 92273942 + MGP_AJ_P0021506 protein_coding protein_coding MGP_AJ_T0021508.1 MGP_AJ_G0016335.1 mouse_genomes_project 1 92259727 92271552 + MGP_AJ_P0021508 protein_coding protein_coding MGP_AJ_T0005722.1 MGP_AJ_G0004806.1 mouse_genomes_project 1 48595097 48597424 + Gm28321 lincRNA lincRNA MGP_AJ_T0098888.1 MGP_AJ_G0036871.1 mouse_genomes_project 1 182311570 182314047 + Gm37214 sense_intronic sense_intronic MGP_AJ_T0000763.1 MGP_AJ_G0000701.1 mouse_genomes_project 1 179247558 179248348 + TEC TEC MGP_AJ_T0005670.1 MGP_AJ_G0004772.1 mouse_genomes_project 1 28542319 28613193 - lincRNA lincRNA MGP_AJ_T0098506.1 MGP_AJ_G0036490.1 mouse_genomes_project 1 83667404 83667508 + n-R5s215 rRNA rRNA MGP_AJ_T0022003.1 MGP_AJ_G0016448.1 mouse_genomes_project 1 130464799 130509857 - MGP_AJ_P0022003 Mfsd4a protein_coding protein_coding MGP_AJ_T0022004.1 MGP_AJ_G0016448.1 mouse_genomes_project 1 130465242 130471052 - Mfsd4a protein_coding retained_intron MGP_AJ_T0022005.1 MGP_AJ_G0016448.1 mouse_genomes_project 1 130468639 130509911 - MGP_AJ_P0022005 Mfsd4a protein_coding protein_coding MGP_AJ_T0022006.1 MGP_AJ_G0016448.1 mouse_genomes_project 1 130468826 130509909 - MGP_AJ_P0022006 Mfsd4a protein_coding protein_coding MGP_AJ_T0022007.1 MGP_AJ_G0016448.1 mouse_genomes_project 1 130468826 130509772 - MGP_AJ_P0022007 Mfsd4a protein_coding protein_coding MGP_AJ_T0022008.1 MGP_AJ_G0016448.1 mouse_genomes_project 1 130468853 130510008 - MGP_AJ_P0022008 Mfsd4a protein_coding nonsense_mediated_decay MGP_AJ_T0022009.1 MGP_AJ_G0016448.1 mouse_genomes_project 1 130478768 130509838 - MGP_AJ_P0022009 Mfsd4a protein_coding protein_coding MGP_AJ_T0022010.1 MGP_AJ_G0016448.1 mouse_genomes_project 1 130478777 130509879 - MGP_AJ_P0022010 Mfsd4a protein_coding protein_coding MGP_AJ_T0022011.1 MGP_AJ_G0016448.1 mouse_genomes_project 1 130480811 130483886 - Mfsd4a protein_coding processed_transcript MGP_AJ_T0022012.1 MGP_AJ_G0016448.1 mouse_genomes_project 1 130480915 130509846 - MGP_AJ_P0022012 Mfsd4a protein_coding protein_coding MGP_AJ_T0022013.1 MGP_AJ_G0016448.1 mouse_genomes_project 1 130482642 130488529 - Mfsd4a protein_coding retained_intron MGP_AJ_T0022014.1 MGP_AJ_G0016448.1 mouse_genomes_project 1 130488406 130496123 - MGP_AJ_P0022014 Mfsd4a protein_coding nonsense_mediated_decay MGP_AJ_T0021232.1 MGP_AJ_G0016277.1 mouse_genomes_project 1 88963257 89042331 - MGP_AJ_P0021232 Col6a3 protein_coding protein_coding MGP_AJ_T0021233.1 MGP_AJ_G0016277.1 mouse_genomes_project 1 88963257 89042331 - MGP_AJ_P0021233 Col6a3 protein_coding protein_coding MGP_AJ_T0021234.1 MGP_AJ_G0016277.1 mouse_genomes_project 1 88964288 89042312 - MGP_AJ_P0021234 Col6a3 protein_coding protein_coding MGP_AJ_T0021235.1 MGP_AJ_G0016277.1 mouse_genomes_project 1 88964817 88970644 - Col6a3 protein_coding retained_intron MGP_AJ_T0021236.1 MGP_AJ_G0016277.1 mouse_genomes_project 1 88989028 89005555 - Col6a3 protein_coding retained_intron MGP_AJ_T0021237.1 MGP_AJ_G0016277.1 mouse_genomes_project 1 88991454 88992284 - Col6a3 protein_coding retained_intron MGP_AJ_T0021238.1 MGP_AJ_G0016277.1 mouse_genomes_project 1 89000045 89042288 - MGP_AJ_P0021238 Col6a3 protein_coding protein_coding MGP_AJ_T0021239.1 MGP_AJ_G0016277.1 mouse_genomes_project 1 89020553 89042331 - MGP_AJ_P0021239 Col6a3 protein_coding protein_coding MGP_AJ_T0005960.1 MGP_AJ_G0004994.1 mouse_genomes_project 1 158551421 158554672 - 4930562F07Rik lincRNA lincRNA MGP_AJ_T0005961.1 MGP_AJ_G0004994.1 mouse_genomes_project 1 158551421 158554605 - 4930562F07Rik lincRNA lincRNA MGP_AJ_T0005962.1 MGP_AJ_G0004994.1 mouse_genomes_project 1 158551656 158554629 - 4930562F07Rik lincRNA lincRNA MGP_AJ_T0009564.1 MGP_AJ_G0007686.1 mouse_genomes_project 1 184188922 184189034 + Mir215 miRNA miRNA MGP_AJ_T0019777.1 MGP_AJ_G0015996.1 mouse_genomes_project 1 50819412 50825852 + MGP_AJ_P0019777 Mstn protein_coding protein_coding MGP_AJ_T0019778.1 MGP_AJ_G0015996.1 mouse_genomes_project 1 50819429 50825818 + MGP_AJ_P0019778 Mstn protein_coding protein_coding MGP_AJ_T0019272.1 MGP_AJ_G0015903.1 mouse_genomes_project 1 33851995 33860791 - MGP_AJ_P0019272 Neurl3 protein_coding protein_coding MGP_AJ_T0019273.1 MGP_AJ_G0015903.1 mouse_genomes_project 1 33856215 33862020 - MGP_AJ_P0019273 Neurl3 protein_coding protein_coding MGP_AJ_T0011932.1 MGP_AJ_G0010027.1 mouse_genomes_project 1 25416378 25418251 + processed_pseudogene processed_pseudogene MGP_AJ_T0002853.1 MGP_AJ_G0002695.1 mouse_genomes_project 1 91039145 91056083 - Gm29481 antisense antisense MGP_AJ_T0023625.1 MGP_AJ_G0016789.1 mouse_genomes_project 1 172063415 172078292 - MGP_AJ_P0023625 protein_coding protein_coding MGP_AJ_T0023626.1 MGP_AJ_G0016789.1 mouse_genomes_project 1 172071329 172078297 - protein_coding retained_intron MGP_AJ_T0019554.1 MGP_AJ_G0015956.1 mouse_genomes_project 1 38460479 38480625 - MGP_AJ_P0019554 Mfsd9 protein_coding protein_coding MGP_AJ_T0019555.1 MGP_AJ_G0015956.1 mouse_genomes_project 1 38460482 38480649 - MGP_AJ_P0019555 Mfsd9 protein_coding nonsense_mediated_decay MGP_AJ_T0019556.1 MGP_AJ_G0015956.1 mouse_genomes_project 1 38470377 38480619 - Mfsd9 protein_coding retained_intron MGP_AJ_T0000499.1 MGP_AJ_G0000440.1 mouse_genomes_project 1 64661050 64663605 - TEC TEC MGP_AJ_T0021963.1 MGP_AJ_G0016437.1 mouse_genomes_project 1 129969835 129981805 + MGP_AJ_P0021963 Fam72a protein_coding protein_coding MGP_AJ_T0000402.1 MGP_AJ_G0000344.1 mouse_genomes_project 1 22693250 22694281 - TEC TEC MGP_AJ_T0011259.1 MGP_AJ_G0009381.1 mouse_genomes_project 1 175565943 175566208 + Gm25288 misc_RNA misc_RNA MGP_AJ_T0002761.1 MGP_AJ_G0002624.1 mouse_genomes_project 1 14965456 14991173 - Gm28154 antisense antisense MGP_AJ_T0000580.1 MGP_AJ_G0000521.1 mouse_genomes_project 1 104575256 104580209 + TEC TEC MGP_AJ_T0021514.1 MGP_AJ_G0016339.1 mouse_genomes_project 1 93831763 93912929 - MGP_AJ_P0021514 St8sia4 protein_coding protein_coding MGP_AJ_T0021515.1 MGP_AJ_G0016339.1 mouse_genomes_project 1 93865260 93912893 - MGP_AJ_P0021515 St8sia4 protein_coding protein_coding MGP_AJ_T0021516.1 MGP_AJ_G0016339.1 mouse_genomes_project 1 93903681 93912926 - St8sia4 protein_coding retained_intron MGP_AJ_T0021517.1 MGP_AJ_G0016339.1 mouse_genomes_project 1 93909321 93912923 - St8sia4 protein_coding retained_intron MGP_AJ_T0018988.1 MGP_AJ_G0015837.1 mouse_genomes_project 1 13869581 13950647 - MGP_AJ_P0018988 Ube2w protein_coding protein_coding MGP_AJ_T0018989.1 MGP_AJ_G0015837.1 mouse_genomes_project 1 13895337 13916544 - Ube2w protein_coding processed_transcript MGP_AJ_T0018990.1 MGP_AJ_G0015837.1 mouse_genomes_project 1 13900975 13950824 - MGP_AJ_P0018990 Ube2w protein_coding protein_coding MGP_AJ_T0018991.1 MGP_AJ_G0015837.1 mouse_genomes_project 1 13913081 13950594 - MGP_AJ_P0018991 Ube2w protein_coding nonsense_mediated_decay MGP_AJ_T0018992.1 MGP_AJ_G0015837.1 mouse_genomes_project 1 13915303 13950619 - Ube2w protein_coding retained_intron MGP_AJ_T0018993.1 MGP_AJ_G0015837.1 mouse_genomes_project 1 13933047 13950619 - Ube2w protein_coding retained_intron MGP_AJ_T0021038.1 MGP_AJ_G0016231.1 mouse_genomes_project 1 84562468 84601861 - Pde6d protein_coding retained_intron MGP_AJ_T0021039.1 MGP_AJ_G0016231.1 mouse_genomes_project 1 84562468 84601861 - MGP_AJ_P0021039 Pde6d protein_coding protein_coding MGP_AJ_T0021040.1 MGP_AJ_G0016231.1 mouse_genomes_project 1 84562496 84601943 - MGP_AJ_P0021040 Pde6d protein_coding nonsense_mediated_decay MGP_AJ_T0021041.1 MGP_AJ_G0016231.1 mouse_genomes_project 1 84562994 84601831 - Pde6d protein_coding processed_transcript MGP_AJ_T0021042.1 MGP_AJ_G0016231.1 mouse_genomes_project 1 84564866 84601861 - MGP_AJ_P0021042 Pde6d protein_coding protein_coding MGP_AJ_T0000434.1 MGP_AJ_G0000375.1 mouse_genomes_project 1 31346449 31346790 + TEC TEC MGP_AJ_T0023657.1 MGP_AJ_G0016810.1 mouse_genomes_project 1 173207085 173218768 + MGP_AJ_P0023657 Olfr414 protein_coding protein_coding MGP_AJ_T0023658.1 MGP_AJ_G0016810.1 mouse_genomes_project 1 173217646 173218601 + MGP_AJ_P0023658 Olfr414 protein_coding protein_coding MGP_AJ_T0098877.1 MGP_AJ_G0036860.1 mouse_genomes_project 1 133912740 133917334 - Gm28277 sense_intronic sense_intronic MGP_AJ_T0012307.1 MGP_AJ_G0010402.1 mouse_genomes_project 1 159374277 159374742 + processed_pseudogene processed_pseudogene MGP_AJ_T0021185.1 MGP_AJ_G0016262.1 mouse_genomes_project 1 86316566 86317617 - MGP_AJ_P0021185 Dnajb3 protein_coding protein_coding MGP_AJ_T0102205.1 MGP_AJ_G0039948.1 mouse_genomes_project 1 176961582 176962555 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0100464.1 MGP_AJ_G0038430.1 mouse_genomes_project 1 132969186 132969312 + Gm25612 snoRNA snoRNA MGP_AJ_T0102169.1 MGP_AJ_G0039912.1 mouse_genomes_project 1 95444566 95584356 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0102151.1 MGP_AJ_G0039894.1 mouse_genomes_project 1 63313584 63313856 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0009468.1 MGP_AJ_G0007590.1 mouse_genomes_project 1 6110198 6110308 + Gm24276 miRNA miRNA MGP_AJ_T0000570.1 MGP_AJ_G0000511.1 mouse_genomes_project 1 94563556 94565850 + TEC TEC MGP_AJ_T0000515.1 MGP_AJ_G0000456.1 mouse_genomes_project 1 72255055 72255374 - TEC TEC MGP_AJ_T0000404.1 MGP_AJ_G0000346.1 mouse_genomes_project 1 22724672 22728104 - TEC TEC MGP_AJ_T0012018.1 MGP_AJ_G0010113.1 mouse_genomes_project 1 47337061 47337498 - processed_pseudogene processed_pseudogene MGP_AJ_T0099223.1 MGP_AJ_G0037189.1 mouse_genomes_project 1 169569786 169569950 + Gm26110 snRNA snRNA MGP_AJ_T0019975.1 MGP_AJ_G0016036.1 mouse_genomes_project 1 56289284 56335159 - MGP_AJ_P0019975 Orc2 protein_coding protein_coding MGP_AJ_T0019976.1 MGP_AJ_G0016036.1 mouse_genomes_project 1 56290717 56331466 - MGP_AJ_P0019976 Orc2 protein_coding protein_coding MGP_AJ_T0019977.1 MGP_AJ_G0016036.1 mouse_genomes_project 1 56310345 56311484 - Orc2 protein_coding retained_intron MGP_AJ_T0019978.1 MGP_AJ_G0016036.1 mouse_genomes_project 1 56313732 56334975 - MGP_AJ_P0019978 Orc2 protein_coding protein_coding MGP_AJ_T0019979.1 MGP_AJ_G0016036.1 mouse_genomes_project 1 56330426 56335005 - MGP_AJ_P0019979 Orc2 protein_coding protein_coding MGP_AJ_T0098863.1 MGP_AJ_G0036847.1 mouse_genomes_project 1 48934947 48937381 + Gm28320 sense_intronic sense_intronic MGP_AJ_T0012225.1 MGP_AJ_G0010320.1 mouse_genomes_project 1 121642937 121645571 + processed_pseudogene processed_pseudogene MGP_AJ_T0000406.1 MGP_AJ_G0000348.1 mouse_genomes_project 1 22756844 22759950 - TEC TEC MGP_AJ_T0005844.1 MGP_AJ_G0004902.1 mouse_genomes_project 1 90977432 90978700 - Gm29482 lincRNA lincRNA MGP_AJ_T0099115.1 MGP_AJ_G0037086.1 mouse_genomes_project 1 20449690 20639090 - Gm29506 sense_overlapping sense_overlapping MGP_AJ_T0009543.1 MGP_AJ_G0007665.1 mouse_genomes_project 1 157812001 157812067 + Mir1843b miRNA miRNA MGP_AJ_T0020688.1 MGP_AJ_G0016165.1 mouse_genomes_project 1 73169750 73186601 - MGP_AJ_P0020688 protein_coding protein_coding MGP_AJ_T0020689.1 MGP_AJ_G0016165.1 mouse_genomes_project 1 73179396 73180536 - protein_coding retained_intron MGP_AJ_T0020690.1 MGP_AJ_G0016165.1 mouse_genomes_project 1 73181029 73186438 - MGP_AJ_P0020690 protein_coding protein_coding MGP_AJ_T0020691.1 MGP_AJ_G0016165.1 mouse_genomes_project 1 73181029 73186422 - MGP_AJ_P0020691 protein_coding protein_coding MGP_AJ_T0020692.1 MGP_AJ_G0016165.1 mouse_genomes_project 1 73181097 73186890 - MGP_AJ_P0020692 protein_coding protein_coding MGP_AJ_T0020693.1 MGP_AJ_G0016165.1 mouse_genomes_project 1 73181121 73186596 - protein_coding processed_transcript MGP_AJ_T0009491.1 MGP_AJ_G0007613.1 mouse_genomes_project 1 52571874 52571979 + Gm24053 miRNA miRNA MGP_AJ_T0002945.1 MGP_AJ_G0002765.1 mouse_genomes_project 1 168472628 168476210 + 3110045C21Rik antisense antisense MGP_AJ_T0002946.1 MGP_AJ_G0002765.1 mouse_genomes_project 1 168472671 168476184 + 3110045C21Rik antisense antisense MGP_AJ_T0000429.1 MGP_AJ_G0000371.1 mouse_genomes_project 1 30535027 30540034 - TEC TEC MGP_AJ_T0011260.1 MGP_AJ_G0009382.1 mouse_genomes_project 1 183738613 183738888 - Gm23780 misc_RNA misc_RNA MGP_AJ_T0101695.1 MGP_AJ_G0039649.1 mouse_genomes_project 1 184364428 184375054 + transcribed_processed_pseudogene processed_transcript MGP_AJ_T0101696.1 MGP_AJ_G0039649.1 mouse_genomes_project 1 184374282 184374912 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0021619.1 MGP_AJ_G0016362.1 mouse_genomes_project 1 105818141 105853832 + MGP_AJ_P0021619 Serpinb7 protein_coding protein_coding MGP_AJ_T0021620.1 MGP_AJ_G0016362.1 mouse_genomes_project 1 105841123 105869993 + MGP_AJ_P0021620 Serpinb7 protein_coding protein_coding MGP_AJ_T0000386.1 MGP_AJ_G0000330.1 mouse_genomes_project 1 12696225 12697758 + TEC TEC MGP_AJ_T0005838.1 MGP_AJ_G0004896.1 mouse_genomes_project 1 89673876 89675627 + Gm28382 lincRNA lincRNA MGP_AJ_T0102184.1 MGP_AJ_G0039927.1 mouse_genomes_project 1 138066737 138160899 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0009474.1 MGP_AJ_G0007596.1 mouse_genomes_project 1 20695887 20695971 + Mir30c-2 miRNA miRNA MGP_AJ_T0005660.1 MGP_AJ_G0004763.1 mouse_genomes_project 1 18298938 18300768 - 6720483E21Rik lincRNA lincRNA MGP_AJ_T0005665.1 MGP_AJ_G0004768.1 mouse_genomes_project 1 22366850 22368618 - Gm28237 lincRNA lincRNA MGP_AJ_T0005666.1 MGP_AJ_G0004768.1 mouse_genomes_project 1 22367637 22368800 - Gm28237 lincRNA lincRNA MGP_AJ_T0023279.1 MGP_AJ_G0016703.1 mouse_genomes_project 1 168452733 168472461 - MGP_AJ_P0023279 Hsd17b7 protein_coding protein_coding MGP_AJ_T0023280.1 MGP_AJ_G0016703.1 mouse_genomes_project 1 168456052 168468945 - Hsd17b7 protein_coding processed_transcript MGP_AJ_T0023281.1 MGP_AJ_G0016703.1 mouse_genomes_project 1 168458676 168472461 - MGP_AJ_P0023281 Hsd17b7 protein_coding protein_coding MGP_AJ_T0023282.1 MGP_AJ_G0016703.1 mouse_genomes_project 1 168462604 168469372 - Hsd17b7 protein_coding processed_transcript MGP_AJ_T0002966.1 MGP_AJ_G0002782.1 mouse_genomes_project 1 179624640 179637128 - Gm37768 antisense antisense MGP_AJ_T0000481.1 MGP_AJ_G0000422.1 mouse_genomes_project 1 57799001 57799722 - TEC TEC MGP_AJ_T0022498.1 MGP_AJ_G0016551.1 mouse_genomes_project 1 142934039 142986653 - Rgs21 protein_coding processed_transcript MGP_AJ_T0022499.1 MGP_AJ_G0016551.1 mouse_genomes_project 1 142935990 142970550 - MGP_AJ_P0022499 Rgs21 protein_coding protein_coding MGP_AJ_T0011911.1 MGP_AJ_G0010006.1 mouse_genomes_project 1 18354451 18355652 + processed_pseudogene processed_pseudogene MGP_AJ_T0020751.1 MGP_AJ_G0016174.1 mouse_genomes_project 1 73403617 73409779 + MGP_AJ_P0020751 Tmem198 protein_coding protein_coding MGP_AJ_T0020752.1 MGP_AJ_G0016174.1 mouse_genomes_project 1 73403661 73406698 + MGP_AJ_P0020752 Tmem198 protein_coding protein_coding MGP_AJ_T0020753.1 MGP_AJ_G0016174.1 mouse_genomes_project 1 73403665 73409791 + MGP_AJ_P0020753 Tmem198 protein_coding protein_coding MGP_AJ_T0020754.1 MGP_AJ_G0016174.1 mouse_genomes_project 1 73403789 73406761 + MGP_AJ_P0020754 Tmem198 protein_coding protein_coding MGP_AJ_T0020193.1 MGP_AJ_G0016071.1 mouse_genomes_project 1 61175696 61219702 + MGP_AJ_P0020193 Zdbf2 protein_coding protein_coding MGP_AJ_T0020194.1 MGP_AJ_G0016071.1 mouse_genomes_project 1 61175700 61198544 + MGP_AJ_P0020194 Zdbf2 protein_coding protein_coding MGP_AJ_T0020195.1 MGP_AJ_G0016071.1 mouse_genomes_project 1 61176025 61219701 + MGP_AJ_P0020195 Zdbf2 protein_coding protein_coding MGP_AJ_T0022293.1 MGP_AJ_G0016510.1 mouse_genomes_project 1 134270520 134273546 + MGP_AJ_P0022293 Phlda3 protein_coding protein_coding MGP_AJ_T0022294.1 MGP_AJ_G0016510.1 mouse_genomes_project 1 134271535 134273332 + Phlda3 protein_coding processed_transcript MGP_AJ_T0012247.1 MGP_AJ_G0010342.1 mouse_genomes_project 1 135306031 135306370 - processed_pseudogene processed_pseudogene MGP_AJ_T0012003.1 MGP_AJ_G0010098.1 mouse_genomes_project 1 43692239 43692503 - processed_pseudogene processed_pseudogene MGP_AJ_T0000474.1 MGP_AJ_G0000415.1 mouse_genomes_project 1 53773417 53773770 - TEC TEC MGP_AJ_T0012181.1 MGP_AJ_G0010276.1 mouse_genomes_project 1 106988647 106988825 - processed_pseudogene processed_pseudogene MGP_AJ_T0099208.1 MGP_AJ_G0037174.1 mouse_genomes_project 1 138145659 138145763 + Gm25619 snRNA snRNA MGP_AJ_T0099212.1 MGP_AJ_G0037178.1 mouse_genomes_project 1 143362810 143362916 - Gm22681 snRNA snRNA MGP_AJ_T0019448.1 MGP_AJ_G0015933.1 mouse_genomes_project 1 35700065 35786018 - MGP_AJ_P0019448 Rev1 protein_coding protein_coding MGP_AJ_T0019449.1 MGP_AJ_G0015933.1 mouse_genomes_project 1 35700075 35739873 - Rev1 protein_coding retained_intron MGP_AJ_T0019450.1 MGP_AJ_G0015933.1 mouse_genomes_project 1 35700579 35701530 - Rev1 protein_coding retained_intron MGP_AJ_T0019451.1 MGP_AJ_G0015933.1 mouse_genomes_project 1 35703798 35704982 - Rev1 protein_coding retained_intron MGP_AJ_T0019452.1 MGP_AJ_G0015933.1 mouse_genomes_project 1 35718477 35735524 - MGP_AJ_P0019452 Rev1 protein_coding nonsense_mediated_decay MGP_AJ_T0019453.1 MGP_AJ_G0015933.1 mouse_genomes_project 1 35722285 35737395 - MGP_AJ_P0019453 Rev1 protein_coding nonsense_mediated_decay MGP_AJ_T0019454.1 MGP_AJ_G0015933.1 mouse_genomes_project 1 35726389 35733102 - Rev1 protein_coding processed_transcript MGP_AJ_T0019455.1 MGP_AJ_G0015933.1 mouse_genomes_project 1 35730818 35735590 - Rev1 protein_coding retained_intron MGP_AJ_T0019456.1 MGP_AJ_G0015933.1 mouse_genomes_project 1 35744818 35784652 - MGP_AJ_P0019456 Rev1 protein_coding protein_coding MGP_AJ_T0019457.1 MGP_AJ_G0015933.1 mouse_genomes_project 1 35752037 35784668 - MGP_AJ_P0019457 Rev1 protein_coding protein_coding MGP_AJ_T0019458.1 MGP_AJ_G0015933.1 mouse_genomes_project 1 35760803 35786157 - MGP_AJ_P0019458 Rev1 protein_coding protein_coding MGP_AJ_T0005794.1 MGP_AJ_G0004858.1 mouse_genomes_project 1 73948522 73950607 - Gm29065 lincRNA lincRNA MGP_AJ_T0005835.1 MGP_AJ_G0004893.1 mouse_genomes_project 1 89172841 89173643 - Gm28199 lincRNA lincRNA MGP_AJ_T0019274.1 MGP_AJ_G0015904.1 mouse_genomes_project 1 33900087 33911544 + MGP_AJ_P0019274 Arid5a protein_coding protein_coding MGP_AJ_T0019275.1 MGP_AJ_G0015904.1 mouse_genomes_project 1 33900108 33910629 + Arid5a protein_coding retained_intron MGP_AJ_T0019276.1 MGP_AJ_G0015904.1 mouse_genomes_project 1 33900108 33912228 + Arid5a protein_coding retained_intron MGP_AJ_T0019277.1 MGP_AJ_G0015904.1 mouse_genomes_project 1 33900108 33911555 + Arid5a protein_coding processed_transcript MGP_AJ_T0019278.1 MGP_AJ_G0015904.1 mouse_genomes_project 1 33900108 33909783 + MGP_AJ_P0019278 Arid5a protein_coding protein_coding MGP_AJ_T0019279.1 MGP_AJ_G0015904.1 mouse_genomes_project 1 33900108 33916370 + MGP_AJ_P0019279 Arid5a protein_coding protein_coding MGP_AJ_T0019280.1 MGP_AJ_G0015904.1 mouse_genomes_project 1 33900108 33912869 + MGP_AJ_P0019280 Arid5a protein_coding nonsense_mediated_decay MGP_AJ_T0019281.1 MGP_AJ_G0015904.1 mouse_genomes_project 1 33900108 33913412 + MGP_AJ_P0019281 Arid5a protein_coding protein_coding MGP_AJ_T0019282.1 MGP_AJ_G0015904.1 mouse_genomes_project 1 33900108 33912867 + MGP_AJ_P0019282 Arid5a protein_coding protein_coding MGP_AJ_T0019283.1 MGP_AJ_G0015904.1 mouse_genomes_project 1 33900112 33905123 + Arid5a protein_coding retained_intron MGP_AJ_T0019284.1 MGP_AJ_G0015904.1 mouse_genomes_project 1 33900133 33908920 + Arid5a protein_coding retained_intron MGP_AJ_T0019285.1 MGP_AJ_G0015904.1 mouse_genomes_project 1 33900140 33912544 + MGP_AJ_P0019285 Arid5a protein_coding protein_coding MGP_AJ_T0019286.1 MGP_AJ_G0015904.1 mouse_genomes_project 1 33908345 33910477 + Arid5a protein_coding retained_intron MGP_AJ_T0019287.1 MGP_AJ_G0015904.1 mouse_genomes_project 1 33909367 33910473 + Arid5a protein_coding retained_intron MGP_AJ_T0019149.1 MGP_AJ_G0015878.1 mouse_genomes_project 1 28451074 28459595 - MGP_AJ_P0019149 Ptp4a1 protein_coding protein_coding MGP_AJ_T0019150.1 MGP_AJ_G0015878.1 mouse_genomes_project 1 28456373 28459412 - MGP_AJ_P0019150 Ptp4a1 protein_coding protein_coding MGP_AJ_T0012202.1 MGP_AJ_G0010297.1 mouse_genomes_project 1 115702671 115703947 - processed_pseudogene processed_pseudogene MGP_AJ_T0021625.1 MGP_AJ_G0016364.1 mouse_genomes_project 1 106018820 106037694 + MGP_AJ_P0021625 Serpinb8 protein_coding protein_coding MGP_AJ_T0021626.1 MGP_AJ_G0016364.1 mouse_genomes_project 1 106018820 106039269 + MGP_AJ_P0021626 Serpinb8 protein_coding protein_coding MGP_AJ_T0021627.1 MGP_AJ_G0016364.1 mouse_genomes_project 1 106018860 106034921 + Serpinb8 protein_coding retained_intron MGP_AJ_T0021628.1 MGP_AJ_G0016364.1 mouse_genomes_project 1 106034650 106036096 + MGP_AJ_P0021628 Serpinb8 protein_coding protein_coding MGP_AJ_T0023090.1 MGP_AJ_G0016658.1 mouse_genomes_project 1 162557574 162567008 + MGP_AJ_P0023090 Sele protein_coding protein_coding MGP_AJ_T0002978.1 MGP_AJ_G0002792.1 mouse_genomes_project 1 185989584 185992299 + 1700007P06Rik antisense antisense MGP_AJ_T0100451.1 MGP_AJ_G0038417.1 mouse_genomes_project 1 101575258 101575400 - Gm23965 snoRNA snoRNA MGP_AJ_T0012303.1 MGP_AJ_G0010398.1 mouse_genomes_project 1 156100523 156100696 - processed_pseudogene processed_pseudogene MGP_AJ_T0009566.1 MGP_AJ_G0007688.1 mouse_genomes_project 1 190904367 190904448 - Mir3473c miRNA miRNA MGP_AJ_T0005995.1 MGP_AJ_G0005022.1 mouse_genomes_project 1 169999899 170014228 - Gm26641 lincRNA lincRNA MGP_AJ_T0022348.1 MGP_AJ_G0016520.1 mouse_genomes_project 1 134689584 134715123 - MGP_AJ_P0022348 Mroh3 protein_coding protein_coding MGP_AJ_T0022349.1 MGP_AJ_G0016520.1 mouse_genomes_project 1 134689762 134698777 - MGP_AJ_P0022349 Mroh3 protein_coding protein_coding MGP_AJ_T0022350.1 MGP_AJ_G0016520.1 mouse_genomes_project 1 134689772 134691011 - Mroh3 protein_coding retained_intron MGP_AJ_T0022351.1 MGP_AJ_G0016520.1 mouse_genomes_project 1 134698849 134707623 - MGP_AJ_P0022351 Mroh3 protein_coding protein_coding MGP_AJ_T0005743.1 MGP_AJ_G0004821.1 mouse_genomes_project 1 57274047 57287541 + Gm29016 lincRNA lincRNA MGP_AJ_T0002974.1 MGP_AJ_G0002788.1 mouse_genomes_project 1 184187527 184189145 + 2010103J01Rik antisense antisense MGP_AJ_T0019018.1 MGP_AJ_G0015843.1 mouse_genomes_project 1 14952004 14981051 + MGP_AJ_P0019018 Pi15 protein_coding protein_coding MGP_AJ_T0002849.1 MGP_AJ_G0002691.1 mouse_genomes_project 1 86538436 86543879 - 4930453O03Rik antisense antisense MGP_AJ_T0002840.1 MGP_AJ_G0002682.1 mouse_genomes_project 1 73315382 73319616 - Gm15178 antisense antisense MGP_AJ_T0021875.1 MGP_AJ_G0016415.1 mouse_genomes_project 1 127622366 127777402 + Thsd7b protein_coding retained_intron MGP_AJ_T0021876.1 MGP_AJ_G0016415.1 mouse_genomes_project 1 127622408 128561597 + MGP_AJ_P0021876 Thsd7b protein_coding protein_coding MGP_AJ_T0021877.1 MGP_AJ_G0016415.1 mouse_genomes_project 1 127622527 128389503 + MGP_AJ_P0021877 Thsd7b protein_coding protein_coding MGP_AJ_T0021878.1 MGP_AJ_G0016415.1 mouse_genomes_project 1 127622549 127969492 + Thsd7b protein_coding processed_transcript MGP_AJ_T0021879.1 MGP_AJ_G0016415.1 mouse_genomes_project 1 127875939 127969526 + MGP_AJ_P0021879 Thsd7b protein_coding protein_coding MGP_AJ_T0021880.1 MGP_AJ_G0016415.1 mouse_genomes_project 1 127952842 127955611 + Thsd7b protein_coding retained_intron MGP_AJ_T0021881.1 MGP_AJ_G0016415.1 mouse_genomes_project 1 128257234 128524021 + Thsd7b protein_coding processed_transcript MGP_AJ_T0021882.1 MGP_AJ_G0016415.1 mouse_genomes_project 1 128504834 128561595 + Thsd7b protein_coding processed_transcript MGP_AJ_T0021883.1 MGP_AJ_G0016415.1 mouse_genomes_project 1 128504849 128506402 + Thsd7b protein_coding processed_transcript MGP_AJ_T0102168.1 MGP_AJ_G0039911.1 mouse_genomes_project 1 90810835 90810947 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0100471.1 MGP_AJ_G0038437.1 mouse_genomes_project 1 151886014 151886154 + Gm25588 snoRNA snoRNA MGP_AJ_T0019238.1 MGP_AJ_G0015896.1 mouse_genomes_project 1 32148308 32165847 - MGP_AJ_P0019238 protein_coding nonsense_mediated_decay MGP_AJ_T0023776.1 MGP_AJ_G0016838.1 mouse_genomes_project 1 178413366 178432401 - MGP_AJ_P0023776 protein_coding protein_coding MGP_AJ_T0000409.1 MGP_AJ_G0000351.1 mouse_genomes_project 1 23022000 23024942 - TEC TEC MGP_AJ_T0002869.1 MGP_AJ_G0002706.1 mouse_genomes_project 1 116827238 116827857 - 2900060B14Rik antisense antisense MGP_AJ_T0002870.1 MGP_AJ_G0002706.1 mouse_genomes_project 1 116827259 116827337 - 2900060B14Rik antisense antisense MGP_AJ_T0005982.1 MGP_AJ_G0005010.1 mouse_genomes_project 1 164287877 164289165 - Gm36972 lincRNA lincRNA MGP_AJ_T0100475.1 MGP_AJ_G0038441.1 mouse_genomes_project 1 159357576 159357697 - Gm24988 snoRNA snoRNA MGP_AJ_T0099150.1 MGP_AJ_G0037116.1 mouse_genomes_project 1 10669421 10669533 - Gm23169 snRNA snRNA MGP_AJ_T0100441.1 MGP_AJ_G0038407.1 mouse_genomes_project 1 84092850 84092972 + Gm22786 snoRNA snoRNA MGP_AJ_T0005793.1 MGP_AJ_G0004857.1 mouse_genomes_project 1 71708744 71807962 - Gm29183 lincRNA lincRNA MGP_AJ_T0022062.1 MGP_AJ_G0016459.1 mouse_genomes_project 1 131017155 131188703 - MGP_AJ_P0022062 Nfasc protein_coding protein_coding MGP_AJ_T0022063.1 MGP_AJ_G0016459.1 mouse_genomes_project 1 131017241 131126861 - MGP_AJ_P0022063 Nfasc protein_coding protein_coding MGP_AJ_T0022064.1 MGP_AJ_G0016459.1 mouse_genomes_project 1 131017244 131083516 - MGP_AJ_P0022064 Nfasc protein_coding protein_coding MGP_AJ_T0022065.1 MGP_AJ_G0016459.1 mouse_genomes_project 1 131023006 131033782 - Nfasc protein_coding processed_transcript MGP_AJ_T0022066.1 MGP_AJ_G0016459.1 mouse_genomes_project 1 131046473 131188737 - MGP_AJ_P0022066 Nfasc protein_coding protein_coding MGP_AJ_T0022067.1 MGP_AJ_G0016459.1 mouse_genomes_project 1 131048271 131051797 - Nfasc protein_coding retained_intron MGP_AJ_T0022068.1 MGP_AJ_G0016459.1 mouse_genomes_project 1 131065850 131070982 - Nfasc protein_coding retained_intron MGP_AJ_T0022069.1 MGP_AJ_G0016459.1 mouse_genomes_project 1 131111703 131188718 - Nfasc protein_coding processed_transcript MGP_AJ_T0018960.1 MGP_AJ_G0015833.1 mouse_genomes_project 1 13392205 13405355 - MGP_AJ_P0018960 4930444P10Rik protein_coding protein_coding MGP_AJ_T0018961.1 MGP_AJ_G0015833.1 mouse_genomes_project 1 13392205 13416528 - MGP_AJ_P0018961 4930444P10Rik protein_coding protein_coding MGP_AJ_T0018962.1 MGP_AJ_G0015833.1 mouse_genomes_project 1 13392205 13416528 - MGP_AJ_P0018962 4930444P10Rik protein_coding protein_coding MGP_AJ_T0021649.1 MGP_AJ_G0016372.1 mouse_genomes_project 1 116634273 116652115 - MGP_AJ_P0021649 Tsn protein_coding protein_coding MGP_AJ_T0021650.1 MGP_AJ_G0016372.1 mouse_genomes_project 1 116639135 116650937 - Tsn protein_coding retained_intron MGP_AJ_T0021651.1 MGP_AJ_G0016372.1 mouse_genomes_project 1 116640375 116650686 - Tsn protein_coding retained_intron MGP_AJ_T0021652.1 MGP_AJ_G0016372.1 mouse_genomes_project 1 116645393 116652161 - Tsn protein_coding processed_transcript MGP_AJ_T0021653.1 MGP_AJ_G0016372.1 mouse_genomes_project 1 116649406 116651935 - Tsn protein_coding retained_intron MGP_AJ_T0021654.1 MGP_AJ_G0016372.1 mouse_genomes_project 1 116651379 116652439 - Tsn protein_coding retained_intron MGP_AJ_T0102159.1 MGP_AJ_G0039902.1 mouse_genomes_project 1 86238840 86239674 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0009519.1 MGP_AJ_G0007641.1 mouse_genomes_project 1 91491829 91491891 + Mir6901 miRNA miRNA MGP_AJ_T0005663.1 MGP_AJ_G0004766.1 mouse_genomes_project 1 20697911 20698255 + Gm29107 lincRNA lincRNA MGP_AJ_T0000400.1 MGP_AJ_G0000342.1 mouse_genomes_project 1 21492663 21495469 + TEC TEC MGP_AJ_T0012219.1 MGP_AJ_G0010314.1 mouse_genomes_project 1 120007039 120007222 - processed_pseudogene processed_pseudogene MGP_AJ_T0021189.1 MGP_AJ_G0016265.1 mouse_genomes_project 1 86413969 86431466 - MGP_AJ_P0021189 protein_coding protein_coding MGP_AJ_T0021190.1 MGP_AJ_G0016265.1 mouse_genomes_project 1 86416371 86431348 - MGP_AJ_P0021190 protein_coding protein_coding MGP_AJ_T0021191.1 MGP_AJ_G0016265.1 mouse_genomes_project 1 86416521 86431297 - MGP_AJ_P0021191 protein_coding protein_coding MGP_AJ_T0021192.1 MGP_AJ_G0016265.1 mouse_genomes_project 1 86418817 86422766 - MGP_AJ_P0021192 protein_coding protein_coding MGP_AJ_T0021193.1 MGP_AJ_G0016265.1 mouse_genomes_project 1 86421906 86423476 - protein_coding retained_intron MGP_AJ_T0021194.1 MGP_AJ_G0016265.1 mouse_genomes_project 1 86427278 86431370 - protein_coding retained_intron MGP_AJ_T0009495.1 MGP_AJ_G0007617.1 mouse_genomes_project 1 61097830 61097956 + Gm27512 miRNA miRNA MGP_AJ_T0020400.1 MGP_AJ_G0016111.1 mouse_genomes_project 1 70049287 70108030 - MGP_AJ_P0020400 Mreg protein_coding protein_coding MGP_AJ_T0022706.1 MGP_AJ_G0016592.1 mouse_genomes_project 1 153639261 153686043 + MGP_AJ_P0022706 Stx6 protein_coding protein_coding MGP_AJ_T0022707.1 MGP_AJ_G0016592.1 mouse_genomes_project 1 153639265 153682328 + MGP_AJ_P0022707 Stx6 protein_coding nonsense_mediated_decay MGP_AJ_T0022708.1 MGP_AJ_G0016592.1 mouse_genomes_project 1 153639294 153678639 + MGP_AJ_P0022708 Stx6 protein_coding protein_coding MGP_AJ_T0022709.1 MGP_AJ_G0016592.1 mouse_genomes_project 1 153639317 153671901 + Stx6 protein_coding processed_transcript MGP_AJ_T0022710.1 MGP_AJ_G0016592.1 mouse_genomes_project 1 153639345 153658554 + Stx6 protein_coding retained_intron MGP_AJ_T0022711.1 MGP_AJ_G0016592.1 mouse_genomes_project 1 153664734 153668727 + Stx6 protein_coding retained_intron MGP_AJ_T0022712.1 MGP_AJ_G0016592.1 mouse_genomes_project 1 153667770 153682406 + Stx6 protein_coding retained_intron MGP_AJ_T0022713.1 MGP_AJ_G0016592.1 mouse_genomes_project 1 153668214 153674142 + Stx6 protein_coding retained_intron MGP_AJ_T0022714.1 MGP_AJ_G0016592.1 mouse_genomes_project 1 153671882 153688599 + MGP_AJ_P0022714 Stx6 protein_coding protein_coding MGP_AJ_T0022715.1 MGP_AJ_G0016592.1 mouse_genomes_project 1 153675400 153682631 + Stx6 protein_coding processed_transcript MGP_AJ_T0009560.1 MGP_AJ_G0007682.1 mouse_genomes_project 1 179465990 179466057 + Mir6904 miRNA miRNA MGP_AJ_T0012072.1 MGP_AJ_G0010167.1 mouse_genomes_project 1 61278106 61278686 - processed_pseudogene processed_pseudogene MGP_AJ_T0012369.1 MGP_AJ_G0010464.1 mouse_genomes_project 1 189904854 189905059 - processed_pseudogene processed_pseudogene MGP_AJ_T0012236.1 MGP_AJ_G0010331.1 mouse_genomes_project 1 128538558 128538967 + processed_pseudogene processed_pseudogene MGP_AJ_T0018812.1 MGP_AJ_G0015808.1 mouse_genomes_project 1 6974624 7007421 - MGP_AJ_P0018812 Mybl1 protein_coding protein_coding MGP_AJ_T0018813.1 MGP_AJ_G0015808.1 mouse_genomes_project 1 6976749 7007236 - MGP_AJ_P0018813 Mybl1 protein_coding protein_coding MGP_AJ_T0018814.1 MGP_AJ_G0015808.1 mouse_genomes_project 1 6983338 6985817 - Mybl1 protein_coding retained_intron MGP_AJ_T0018815.1 MGP_AJ_G0015808.1 mouse_genomes_project 1 6985478 6990655 - Mybl1 protein_coding retained_intron MGP_AJ_T0018816.1 MGP_AJ_G0015808.1 mouse_genomes_project 1 6989069 7006866 - MGP_AJ_P0018816 Mybl1 protein_coding protein_coding MGP_AJ_T0024133.1 MGP_AJ_G0016908.1 mouse_genomes_project 1 188601467 188717970 + Ptpn14 protein_coding retained_intron MGP_AJ_T0024134.1 MGP_AJ_G0016908.1 mouse_genomes_project 1 188664004 188748364 + MGP_AJ_P0024134 Ptpn14 protein_coding unknown_likely_coding MGP_AJ_T0024135.1 MGP_AJ_G0016908.1 mouse_genomes_project 1 188664212 188729337 + Ptpn14 protein_coding retained_intron MGP_AJ_T0024136.1 MGP_AJ_G0016908.1 mouse_genomes_project 1 188664248 188748377 + MGP_AJ_P0024136 Ptpn14 protein_coding protein_coding MGP_AJ_T0024137.1 MGP_AJ_G0016908.1 mouse_genomes_project 1 188722403 188729824 + Ptpn14 protein_coding retained_intron MGP_AJ_T0024138.1 MGP_AJ_G0016908.1 mouse_genomes_project 1 188740017 188740792 + Ptpn14 protein_coding processed_transcript MGP_AJ_T0012286.1 MGP_AJ_G0010381.1 mouse_genomes_project 1 150563811 150564616 + processed_pseudogene processed_pseudogene MGP_AJ_T0098512.1 MGP_AJ_G0036496.1 mouse_genomes_project 1 136496178 136496298 - Gm23782 rRNA rRNA MGP_AJ_T0012231.1 MGP_AJ_G0010326.1 mouse_genomes_project 1 125386184 125386899 - processed_pseudogene processed_pseudogene MGP_AJ_T0002818.1 MGP_AJ_G0002668.1 mouse_genomes_project 1 60054882 60059797 - Pard3bos2 antisense antisense MGP_AJ_T0020093.1 MGP_AJ_G0016056.1 mouse_genomes_project 1 57992068 58019781 - MGP_AJ_P0020093 Wdr12 protein_coding protein_coding MGP_AJ_T0020094.1 MGP_AJ_G0016056.1 mouse_genomes_project 1 57998898 58020518 - MGP_AJ_P0020094 Wdr12 protein_coding protein_coding MGP_AJ_T0020095.1 MGP_AJ_G0016056.1 mouse_genomes_project 1 57998898 58020019 - MGP_AJ_P0020095 Wdr12 protein_coding protein_coding MGP_AJ_T0020096.1 MGP_AJ_G0016056.1 mouse_genomes_project 1 58005115 58007793 - Wdr12 protein_coding retained_intron MGP_AJ_T0020097.1 MGP_AJ_G0016056.1 mouse_genomes_project 1 58005825 58007970 - Wdr12 protein_coding processed_transcript MGP_AJ_T0020098.1 MGP_AJ_G0016056.1 mouse_genomes_project 1 58010071 58020008 - MGP_AJ_P0020098 Wdr12 protein_coding protein_coding MGP_AJ_T0020099.1 MGP_AJ_G0016056.1 mouse_genomes_project 1 58010071 58019998 - MGP_AJ_P0020099 Wdr12 protein_coding protein_coding MGP_AJ_T0020100.1 MGP_AJ_G0016056.1 mouse_genomes_project 1 58016028 58019570 - Wdr12 protein_coding retained_intron MGP_AJ_T0006019.1 MGP_AJ_G0005040.1 mouse_genomes_project 1 181908171 181908325 + Gm38079 lincRNA lincRNA MGP_AJ_T0098513.1 MGP_AJ_G0036497.1 mouse_genomes_project 1 137370652 137370768 - n-R5s217 rRNA rRNA MGP_AJ_T0019854.1 MGP_AJ_G0016013.1 mouse_genomes_project 1 52884451 52895693 - MGP_AJ_P0019854 Hspd1 protein_coding protein_coding MGP_AJ_T0019855.1 MGP_AJ_G0016013.1 mouse_genomes_project 1 52890735 52895912 - MGP_AJ_P0019855 Hspd1 protein_coding protein_coding MGP_AJ_T0019856.1 MGP_AJ_G0016013.1 mouse_genomes_project 1 52892201 52895912 - MGP_AJ_P0019856 Hspd1 protein_coding protein_coding MGP_AJ_T0006005.1 MGP_AJ_G0005031.1 mouse_genomes_project 1 179645659 179650663 - Gm38293 lincRNA lincRNA MGP_AJ_T0000650.1 MGP_AJ_G0000589.1 mouse_genomes_project 1 136462964 136468200 + TEC TEC MGP_AJ_T0005829.1 MGP_AJ_G0004887.1 mouse_genomes_project 1 87550445 87595960 - C030007H22Rik lincRNA lincRNA MGP_AJ_T0021933.1 MGP_AJ_G0016433.1 mouse_genomes_project 1 129594942 129607895 + Eif2d protein_coding retained_intron MGP_AJ_T0021934.1 MGP_AJ_G0016433.1 mouse_genomes_project 1 129594942 129621694 + MGP_AJ_P0021934 Eif2d protein_coding protein_coding MGP_AJ_T0021935.1 MGP_AJ_G0016433.1 mouse_genomes_project 1 129594942 129622933 + MGP_AJ_P0021935 Eif2d protein_coding protein_coding MGP_AJ_T0021936.1 MGP_AJ_G0016433.1 mouse_genomes_project 1 129594942 129629065 + MGP_AJ_P0021936 Eif2d protein_coding nonsense_mediated_decay MGP_AJ_T0021937.1 MGP_AJ_G0016433.1 mouse_genomes_project 1 129594942 129629479 + MGP_AJ_P0021937 Eif2d protein_coding protein_coding MGP_AJ_T0021938.1 MGP_AJ_G0016433.1 mouse_genomes_project 1 129594942 129624306 + MGP_AJ_P0021938 Eif2d protein_coding nonsense_mediated_decay MGP_AJ_T0021939.1 MGP_AJ_G0016433.1 mouse_genomes_project 1 129594942 129636731 + MGP_AJ_P0021939 Eif2d protein_coding nonsense_mediated_decay MGP_AJ_T0021940.1 MGP_AJ_G0016433.1 mouse_genomes_project 1 129615833 129620965 + Eif2d protein_coding processed_transcript MGP_AJ_T0020157.1 MGP_AJ_G0016066.1 mouse_genomes_project 1 60601174 60638585 + Nrp2 protein_coding retained_intron MGP_AJ_T0020158.1 MGP_AJ_G0016066.1 mouse_genomes_project 1 60601174 60717953 + MGP_AJ_P0020158 Nrp2 protein_coding protein_coding MGP_AJ_T0020159.1 MGP_AJ_G0016066.1 mouse_genomes_project 1 60601174 60717953 + MGP_AJ_P0020159 Nrp2 protein_coding protein_coding MGP_AJ_T0020160.1 MGP_AJ_G0016066.1 mouse_genomes_project 1 60601591 60717953 + MGP_AJ_P0020160 Nrp2 protein_coding protein_coding MGP_AJ_T0020161.1 MGP_AJ_G0016066.1 mouse_genomes_project 1 60601591 60698955 + MGP_AJ_P0020161 Nrp2 protein_coding protein_coding MGP_AJ_T0020162.1 MGP_AJ_G0016066.1 mouse_genomes_project 1 60601591 60695865 + MGP_AJ_P0020162 Nrp2 protein_coding protein_coding MGP_AJ_T0020163.1 MGP_AJ_G0016066.1 mouse_genomes_project 1 60601591 60717953 + MGP_AJ_P0020163 Nrp2 protein_coding protein_coding MGP_AJ_T0000645.1 MGP_AJ_G0000585.1 mouse_genomes_project 1 136422198 136426072 + TEC TEC MGP_AJ_T0006001.1 MGP_AJ_G0005028.1 mouse_genomes_project 1 176419045 176420447 - 2310043L19Rik lincRNA lincRNA MGP_AJ_T0102170.1 MGP_AJ_G0039913.1 mouse_genomes_project 1 100532973 100533664 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0002845.1 MGP_AJ_G0002687.1 mouse_genomes_project 1 84316275 84317140 - Gm28626 antisense antisense MGP_AJ_T0100492.1 MGP_AJ_G0038458.1 mouse_genomes_project 1 184116926 184117058 + Snora36b snoRNA snoRNA MGP_AJ_T0012048.1 MGP_AJ_G0010143.1 mouse_genomes_project 1 57578499 57578884 + processed_pseudogene processed_pseudogene MGP_AJ_T0002788.1 MGP_AJ_G0002645.1 mouse_genomes_project 1 36546762 36549905 + Gm37707 antisense antisense MGP_AJ_T0011969.1 MGP_AJ_G0010064.1 mouse_genomes_project 1 32558673 32559109 + processed_pseudogene processed_pseudogene MGP_AJ_T0018994.1 MGP_AJ_G0015838.1 mouse_genomes_project 1 13968953 13984447 - MGP_AJ_P0018994 Tceb1 protein_coding protein_coding MGP_AJ_T0018995.1 MGP_AJ_G0015838.1 mouse_genomes_project 1 13969994 13984605 - MGP_AJ_P0018995 Tceb1 protein_coding protein_coding MGP_AJ_T0018996.1 MGP_AJ_G0015838.1 mouse_genomes_project 1 13970369 13984581 - MGP_AJ_P0018996 Tceb1 protein_coding protein_coding MGP_AJ_T0018997.1 MGP_AJ_G0015838.1 mouse_genomes_project 1 13970396 13984601 - MGP_AJ_P0018997 Tceb1 protein_coding protein_coding MGP_AJ_T0018998.1 MGP_AJ_G0015838.1 mouse_genomes_project 1 13970418 13984477 - MGP_AJ_P0018998 Tceb1 protein_coding protein_coding MGP_AJ_T0018999.1 MGP_AJ_G0015838.1 mouse_genomes_project 1 13970570 13975513 - MGP_AJ_P0018999 Tceb1 protein_coding protein_coding MGP_AJ_T0019000.1 MGP_AJ_G0015838.1 mouse_genomes_project 1 13970700 13984188 - MGP_AJ_P0019000 Tceb1 protein_coding protein_coding MGP_AJ_T0019001.1 MGP_AJ_G0015838.1 mouse_genomes_project 1 13974304 13984463 - Tceb1 protein_coding retained_intron MGP_AJ_T0019002.1 MGP_AJ_G0015838.1 mouse_genomes_project 1 13974423 13984478 - Tceb1 protein_coding retained_intron MGP_AJ_T0019003.1 MGP_AJ_G0015838.1 mouse_genomes_project 1 13975153 13984441 - Tceb1 protein_coding retained_intron MGP_AJ_T0019004.1 MGP_AJ_G0015838.1 mouse_genomes_project 1 13975208 13984605 - Tceb1 protein_coding retained_intron MGP_AJ_T0012058.1 MGP_AJ_G0010153.1 mouse_genomes_project 1 58816880 58817411 + processed_pseudogene processed_pseudogene MGP_AJ_T0099144.1 MGP_AJ_G0037110.1 mouse_genomes_project 1 1832655 1832758 - Gm25493 snRNA snRNA MGP_AJ_T0098872.1 MGP_AJ_G0036855.1 mouse_genomes_project 1 80692342 80693357 + Gm28941 sense_intronic sense_intronic MGP_AJ_T0023704.1 MGP_AJ_G0016821.1 mouse_genomes_project 1 174690750 174692647 + MGP_AJ_P0023704 Gm38100 protein_coding protein_coding MGP_AJ_T0023705.1 MGP_AJ_G0016821.1 mouse_genomes_project 1 174690791 174692120 + MGP_AJ_P0023705 Gm38100 protein_coding protein_coding MGP_AJ_T0022401.1 MGP_AJ_G0016531.1 mouse_genomes_project 1 137317100 137334322 - MGP_AJ_P0022401 Lhx9 protein_coding protein_coding MGP_AJ_T0022402.1 MGP_AJ_G0016531.1 mouse_genomes_project 1 137317100 137339926 - MGP_AJ_P0022402 Lhx9 protein_coding protein_coding MGP_AJ_T0022403.1 MGP_AJ_G0016531.1 mouse_genomes_project 1 137317100 137341146 - MGP_AJ_P0022403 Lhx9 protein_coding protein_coding MGP_AJ_T0022404.1 MGP_AJ_G0016531.1 mouse_genomes_project 1 137321049 137340014 - MGP_AJ_P0022404 Lhx9 protein_coding protein_coding MGP_AJ_T0022405.1 MGP_AJ_G0016531.1 mouse_genomes_project 1 137322839 137334294 - MGP_AJ_P0022405 Lhx9 protein_coding protein_coding MGP_AJ_T0022406.1 MGP_AJ_G0016531.1 mouse_genomes_project 1 137323609 137325542 - Lhx9 protein_coding retained_intron MGP_AJ_T0022407.1 MGP_AJ_G0016531.1 mouse_genomes_project 1 137324745 137334319 - MGP_AJ_P0022407 Lhx9 protein_coding nonsense_mediated_decay MGP_AJ_T0000536.1 MGP_AJ_G0000477.1 mouse_genomes_project 1 81029915 81032161 - TEC TEC MGP_AJ_T0023557.1 MGP_AJ_G0016765.1 mouse_genomes_project 1 170907627 170941686 + MGP_AJ_P0023557 Kcnj10 protein_coding protein_coding MGP_AJ_T0101690.1 MGP_AJ_G0039646.1 mouse_genomes_project 1 179201513 179205156 - transcribed_processed_pseudogene processed_transcript MGP_AJ_T0101691.1 MGP_AJ_G0039646.1 mouse_genomes_project 1 179201717 179202791 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0017019.1 MGP_AJ_G0015083.1 mouse_genomes_project 1 130405025 130456488 + Gm29103 processed_transcript processed_transcript MGP_AJ_T0019484.1 MGP_AJ_G0015940.1 mouse_genomes_project 1 37034582 37038060 + MGP_AJ_P0019484 Rpl31 protein_coding protein_coding MGP_AJ_T0019485.1 MGP_AJ_G0015940.1 mouse_genomes_project 1 37034853 37038027 + MGP_AJ_P0019485 Rpl31 protein_coding protein_coding MGP_AJ_T0019486.1 MGP_AJ_G0015940.1 mouse_genomes_project 1 37036542 37038060 + Rpl31 protein_coding retained_intron MGP_AJ_T0023301.1 MGP_AJ_G0016708.1 mouse_genomes_project 1 168791027 168803470 + MGP_AJ_P0023301 Sh2d1b1 protein_coding protein_coding MGP_AJ_T0000669.1 MGP_AJ_G0000608.1 mouse_genomes_project 1 145667830 145669007 - TEC TEC MGP_AJ_T0009516.1 MGP_AJ_G0007638.1 mouse_genomes_project 1 86051792 86051902 + Gm25198 miRNA miRNA MGP_AJ_T0023574.1 MGP_AJ_G0016769.1 mouse_genomes_project 1 171080200 171088257 + Tagln2 protein_coding retained_intron MGP_AJ_T0023575.1 MGP_AJ_G0016769.1 mouse_genomes_project 1 171080200 171089733 + MGP_AJ_P0023575 Tagln2 protein_coding protein_coding MGP_AJ_T0023576.1 MGP_AJ_G0016769.1 mouse_genomes_project 1 171080398 171088175 + MGP_AJ_P0023576 Tagln2 protein_coding protein_coding MGP_AJ_T0023577.1 MGP_AJ_G0016769.1 mouse_genomes_project 1 171081419 171089088 + MGP_AJ_P0023577 Tagln2 protein_coding protein_coding MGP_AJ_T0019610.1 MGP_AJ_G0015970.1 mouse_genomes_project 1 41788123 41803814 - MGP_AJ_P0019610 Tex30 protein_coding protein_coding MGP_AJ_T0019611.1 MGP_AJ_G0015970.1 mouse_genomes_project 1 41788126 41803861 - MGP_AJ_P0019611 Tex30 protein_coding protein_coding MGP_AJ_T0019612.1 MGP_AJ_G0015970.1 mouse_genomes_project 1 41788320 41803785 - MGP_AJ_P0019612 Tex30 protein_coding protein_coding MGP_AJ_T0019613.1 MGP_AJ_G0015970.1 mouse_genomes_project 1 41788320 41803766 - MGP_AJ_P0019613 Tex30 protein_coding protein_coding MGP_AJ_T0019614.1 MGP_AJ_G0015970.1 mouse_genomes_project 1 41788370 41803846 - MGP_AJ_P0019614 Tex30 protein_coding protein_coding MGP_AJ_T0019615.1 MGP_AJ_G0015970.1 mouse_genomes_project 1 41788371 41803864 - MGP_AJ_P0019615 Tex30 protein_coding protein_coding MGP_AJ_T0019616.1 MGP_AJ_G0015970.1 mouse_genomes_project 1 41788372 41803081 - MGP_AJ_P0019616 Tex30 protein_coding protein_coding MGP_AJ_T0019617.1 MGP_AJ_G0015970.1 mouse_genomes_project 1 41788539 41803856 - MGP_AJ_P0019617 Tex30 protein_coding protein_coding MGP_AJ_T0019618.1 MGP_AJ_G0015970.1 mouse_genomes_project 1 41789411 41803824 - MGP_AJ_P0019618 Tex30 protein_coding protein_coding MGP_AJ_T0019619.1 MGP_AJ_G0015970.1 mouse_genomes_project 1 41789527 41803436 - MGP_AJ_P0019619 Tex30 protein_coding protein_coding MGP_AJ_T0019620.1 MGP_AJ_G0015970.1 mouse_genomes_project 1 41790013 41803837 - MGP_AJ_P0019620 Tex30 protein_coding protein_coding MGP_AJ_T0019621.1 MGP_AJ_G0015970.1 mouse_genomes_project 1 41790019 41803860 - MGP_AJ_P0019621 Tex30 protein_coding protein_coding MGP_AJ_T0019622.1 MGP_AJ_G0015970.1 mouse_genomes_project 1 41790025 41801413 - MGP_AJ_P0019622 Tex30 protein_coding protein_coding MGP_AJ_T0012305.1 MGP_AJ_G0010400.1 mouse_genomes_project 1 157848933 157849439 + processed_pseudogene processed_pseudogene MGP_AJ_T0021345.1 MGP_AJ_G0016297.1 mouse_genomes_project 1 90689109 90700825 - MGP_AJ_P0021345 Olfr1416 protein_coding protein_coding MGP_AJ_T0011905.1 MGP_AJ_G0010000.1 mouse_genomes_project 1 16432697 16432809 + processed_pseudogene processed_pseudogene MGP_AJ_T0000777.1 MGP_AJ_G0000714.1 mouse_genomes_project 1 183307471 183308226 + TEC TEC MGP_AJ_T0011956.1 MGP_AJ_G0010051.1 mouse_genomes_project 1 31434492 31437049 - processed_pseudogene processed_pseudogene MGP_AJ_T0022981.1 MGP_AJ_G0016636.1 mouse_genomes_project 1 160318111 160380448 - MGP_AJ_P0022981 Suco protein_coding protein_coding MGP_AJ_T0022982.1 MGP_AJ_G0016636.1 mouse_genomes_project 1 160322397 160324720 - Suco protein_coding retained_intron MGP_AJ_T0022983.1 MGP_AJ_G0016636.1 mouse_genomes_project 1 160331962 160333117 - Suco protein_coding retained_intron MGP_AJ_T0022984.1 MGP_AJ_G0016636.1 mouse_genomes_project 1 160338992 160348638 - Suco protein_coding processed_transcript MGP_AJ_T0022985.1 MGP_AJ_G0016636.1 mouse_genomes_project 1 160342623 160348198 - Suco protein_coding retained_intron MGP_AJ_T0022986.1 MGP_AJ_G0016636.1 mouse_genomes_project 1 160348692 160357626 - MGP_AJ_P0022986 Suco protein_coding protein_coding MGP_AJ_T0022987.1 MGP_AJ_G0016636.1 mouse_genomes_project 1 160356711 160361336 - MGP_AJ_P0022987 Suco protein_coding protein_coding MGP_AJ_T0021477.1 MGP_AJ_G0016328.1 mouse_genomes_project 1 91928379 91981945 - MGP_AJ_P0021477 Thap4 protein_coding protein_coding MGP_AJ_T0021478.1 MGP_AJ_G0016328.1 mouse_genomes_project 1 91931872 91958142 - MGP_AJ_P0021478 Thap4 protein_coding protein_coding MGP_AJ_T0021479.1 MGP_AJ_G0016328.1 mouse_genomes_project 1 91931875 91982029 - MGP_AJ_P0021479 Thap4 protein_coding nonsense_mediated_decay MGP_AJ_T0021480.1 MGP_AJ_G0016328.1 mouse_genomes_project 1 91931876 91941406 - MGP_AJ_P0021480 Thap4 protein_coding nonsense_mediated_decay MGP_AJ_T0021481.1 MGP_AJ_G0016328.1 mouse_genomes_project 1 91941203 91977132 - MGP_AJ_P0021481 Thap4 protein_coding protein_coding MGP_AJ_T0021482.1 MGP_AJ_G0016328.1 mouse_genomes_project 1 91950829 91981815 - Thap4 protein_coding retained_intron MGP_AJ_T0021909.1 MGP_AJ_G0016424.1 mouse_genomes_project 1 129235228 129249048 + MGP_AJ_P0021909 Fcamr protein_coding protein_coding MGP_AJ_T0021910.1 MGP_AJ_G0016424.1 mouse_genomes_project 1 129235228 129249016 + MGP_AJ_P0021910 Fcamr protein_coding protein_coding MGP_AJ_T0023955.1 MGP_AJ_G0016871.1 mouse_genomes_project 1 181194379 181201743 - MGP_AJ_P0023955 Degs1 protein_coding protein_coding MGP_AJ_T0023956.1 MGP_AJ_G0016871.1 mouse_genomes_project 1 181197423 181201743 - Degs1 protein_coding retained_intron MGP_AJ_T0023957.1 MGP_AJ_G0016871.1 mouse_genomes_project 1 181197958 181201163 - MGP_AJ_P0023957 Degs1 protein_coding protein_coding MGP_AJ_T0022892.1 MGP_AJ_G0016620.1 mouse_genomes_project 1 158520652 158524110 + 4930523C07Rik protein_coding retained_intron MGP_AJ_T0022893.1 MGP_AJ_G0016620.1 mouse_genomes_project 1 158520654 158556898 + 4930523C07Rik protein_coding lincRNA MGP_AJ_T0022894.1 MGP_AJ_G0016620.1 mouse_genomes_project 1 158520654 158548227 + 4930523C07Rik protein_coding lincRNA MGP_AJ_T0022895.1 MGP_AJ_G0016620.1 mouse_genomes_project 1 158520675 158549469 + 4930523C07Rik protein_coding lincRNA MGP_AJ_T0022896.1 MGP_AJ_G0016620.1 mouse_genomes_project 1 158520717 158548196 + 4930523C07Rik protein_coding lincRNA MGP_AJ_T0022897.1 MGP_AJ_G0016620.1 mouse_genomes_project 1 158551848 158552148 + MGP_AJ_P0022897 4930523C07Rik protein_coding protein_coding MGP_AJ_T0005688.1 MGP_AJ_G0004788.1 mouse_genomes_project 1 36715100 36724314 - Gm37821 lincRNA lincRNA MGP_AJ_T0000767.1 MGP_AJ_G0000705.1 mouse_genomes_project 1 180599229 180603040 - TEC TEC MGP_AJ_T0019967.1 MGP_AJ_G0016035.1 mouse_genomes_project 1 56267903 56289970 + MGP_AJ_P0019967 Nif3l1 protein_coding protein_coding MGP_AJ_T0019968.1 MGP_AJ_G0016035.1 mouse_genomes_project 1 56268019 56311851 + MGP_AJ_P0019968 Nif3l1 protein_coding protein_coding MGP_AJ_T0019969.1 MGP_AJ_G0016035.1 mouse_genomes_project 1 56268380 56273260 + MGP_AJ_P0019969 Nif3l1 protein_coding nonsense_mediated_decay MGP_AJ_T0019970.1 MGP_AJ_G0016035.1 mouse_genomes_project 1 56268481 56270803 + MGP_AJ_P0019970 Nif3l1 protein_coding protein_coding MGP_AJ_T0019971.1 MGP_AJ_G0016035.1 mouse_genomes_project 1 56270383 56288780 + MGP_AJ_P0019971 Nif3l1 protein_coding protein_coding MGP_AJ_T0019972.1 MGP_AJ_G0016035.1 mouse_genomes_project 1 56271919 56284314 + Nif3l1 protein_coding retained_intron MGP_AJ_T0019973.1 MGP_AJ_G0016035.1 mouse_genomes_project 1 56279917 56282702 + Nif3l1 protein_coding retained_intron MGP_AJ_T0019974.1 MGP_AJ_G0016035.1 mouse_genomes_project 1 56284198 56287898 + Nif3l1 protein_coding retained_intron MGP_AJ_T0098887.1 MGP_AJ_G0036870.1 mouse_genomes_project 1 163961537 163964612 - Gm37864 sense_intronic sense_intronic MGP_AJ_T0000560.1 MGP_AJ_G0000501.1 mouse_genomes_project 1 88718603 88721399 + TEC TEC MGP_AJ_T0020010.1 MGP_AJ_G0016042.1 mouse_genomes_project 1 56790518 56860402 - MGP_AJ_P0020010 Trak2 protein_coding protein_coding MGP_AJ_T0020011.1 MGP_AJ_G0016042.1 mouse_genomes_project 1 56790686 56794171 - Trak2 protein_coding retained_intron MGP_AJ_T0020012.1 MGP_AJ_G0016042.1 mouse_genomes_project 1 56806844 56808646 - Trak2 protein_coding processed_transcript MGP_AJ_T0020013.1 MGP_AJ_G0016042.1 mouse_genomes_project 1 56813721 56860358 - MGP_AJ_P0020013 Trak2 protein_coding protein_coding MGP_AJ_T0020014.1 MGP_AJ_G0016042.1 mouse_genomes_project 1 56832834 56860359 - Trak2 protein_coding retained_intron MGP_AJ_T0012184.1 MGP_AJ_G0010279.1 mouse_genomes_project 1 107932990 107933177 - processed_pseudogene processed_pseudogene MGP_AJ_T0005981.1 MGP_AJ_G0005009.1 mouse_genomes_project 1 164232323 164233545 + Gm37073 lincRNA lincRNA MGP_AJ_T0023554.1 MGP_AJ_G0016764.1 mouse_genomes_project 1 170886843 170895529 - MGP_AJ_P0023554 Kcnj9 protein_coding protein_coding MGP_AJ_T0023555.1 MGP_AJ_G0016764.1 mouse_genomes_project 1 170888444 170895493 - MGP_AJ_P0023555 Kcnj9 protein_coding protein_coding MGP_AJ_T0023556.1 MGP_AJ_G0016764.1 mouse_genomes_project 1 170891500 170894318 - Kcnj9 protein_coding retained_intron MGP_AJ_T0006062.1 MGP_AJ_G0005073.1 mouse_genomes_project 1 191893888 191895317 - Gm31406 lincRNA lincRNA MGP_AJ_T0012165.1 MGP_AJ_G0010260.1 mouse_genomes_project 1 100820899 100821166 - processed_pseudogene processed_pseudogene MGP_AJ_T0000631.1 MGP_AJ_G0000571.1 mouse_genomes_project 1 132236169 132239372 - TEC TEC MGP_AJ_T0020827.1 MGP_AJ_G0016188.1 mouse_genomes_project 1 77548445 77618712 - MGP_AJ_P0020827 Ap1s3 protein_coding protein_coding MGP_AJ_T0020828.1 MGP_AJ_G0016188.1 mouse_genomes_project 1 77550543 77618705 - MGP_AJ_P0020828 Ap1s3 protein_coding nonsense_mediated_decay MGP_AJ_T0022158.1 MGP_AJ_G0016481.1 mouse_genomes_project 1 132576977 132612168 + MGP_AJ_P0022158 Chit1 protein_coding protein_coding MGP_AJ_T0022159.1 MGP_AJ_G0016481.1 mouse_genomes_project 1 132576977 132612168 + MGP_AJ_P0022159 Chit1 protein_coding protein_coding MGP_AJ_T0022160.1 MGP_AJ_G0016481.1 mouse_genomes_project 1 132599277 132612167 + MGP_AJ_P0022160 Chit1 protein_coding protein_coding MGP_AJ_T0018908.1 MGP_AJ_G0015820.1 mouse_genomes_project 1 10026817 10185649 + MGP_AJ_P0018908 Sulf1 protein_coding protein_coding MGP_AJ_T0018909.1 MGP_AJ_G0015820.1 mouse_genomes_project 1 10052772 10158611 + Sulf1 protein_coding retained_intron MGP_AJ_T0018910.1 MGP_AJ_G0015820.1 mouse_genomes_project 1 10053908 10121005 + MGP_AJ_P0018910 Sulf1 protein_coding protein_coding MGP_AJ_T0018911.1 MGP_AJ_G0015820.1 mouse_genomes_project 1 10062501 10121095 + MGP_AJ_P0018911 Sulf1 protein_coding protein_coding MGP_AJ_T0018912.1 MGP_AJ_G0015820.1 mouse_genomes_project 1 10119898 10123274 + Sulf1 protein_coding retained_intron MGP_AJ_T0018913.1 MGP_AJ_G0015820.1 mouse_genomes_project 1 10120982 10194299 + MGP_AJ_P0018913 Sulf1 protein_coding protein_coding MGP_AJ_T0018914.1 MGP_AJ_G0015820.1 mouse_genomes_project 1 10169379 10173849 + Sulf1 protein_coding retained_intron MGP_AJ_T0018915.1 MGP_AJ_G0015820.1 mouse_genomes_project 1 10175962 10194293 + MGP_AJ_P0018915 Sulf1 protein_coding protein_coding MGP_AJ_T0022604.1 MGP_AJ_G0016569.1 mouse_genomes_project 1 150831059 150938648 + MGP_AJ_P0022604 Colgalt2 protein_coding protein_coding MGP_AJ_T0022605.1 MGP_AJ_G0016569.1 mouse_genomes_project 1 150831059 150937771 + MGP_AJ_P0022605 Colgalt2 protein_coding nonsense_mediated_decay MGP_AJ_T0000738.1 MGP_AJ_G0000677.1 mouse_genomes_project 1 170955852 170958586 - TEC TEC MGP_AJ_T0005892.1 MGP_AJ_G0004938.1 mouse_genomes_project 1 119721626 119725509 - 2210011K15Rik lincRNA lincRNA MGP_AJ_T0021062.1 MGP_AJ_G0016238.1 mouse_genomes_project 1 85173403 85181564 - MGP_AJ_P0021062 Ecel1 protein_coding unknown_likely_coding MGP_AJ_T0021063.1 MGP_AJ_G0016238.1 mouse_genomes_project 1 85173634 85174669 - Ecel1 protein_coding retained_intron MGP_AJ_T0021064.1 MGP_AJ_G0016238.1 mouse_genomes_project 1 85180770 85181059 - Ecel1 protein_coding processed_transcript MGP_AJ_T0000439.1 MGP_AJ_G0000380.1 mouse_genomes_project 1 31872379 31873626 - TEC TEC MGP_AJ_T0100487.1 MGP_AJ_G0038453.1 mouse_genomes_project 1 161625018 161625140 + Gm22434 snoRNA snoRNA MGP_AJ_T0021732.1 MGP_AJ_G0016386.1 mouse_genomes_project 1 118491028 118498655 - MGP_AJ_P0021732 Dbi protein_coding protein_coding MGP_AJ_T0021733.1 MGP_AJ_G0016386.1 mouse_genomes_project 1 118491032 118498719 - MGP_AJ_P0021733 Dbi protein_coding nonsense_mediated_decay MGP_AJ_T0021734.1 MGP_AJ_G0016386.1 mouse_genomes_project 1 118491111 118497872 - Dbi protein_coding processed_transcript MGP_AJ_T0021735.1 MGP_AJ_G0016386.1 mouse_genomes_project 1 118491142 118498639 - MGP_AJ_P0021735 Dbi protein_coding protein_coding MGP_AJ_T0021736.1 MGP_AJ_G0016386.1 mouse_genomes_project 1 118493752 118498749 - Dbi protein_coding retained_intron MGP_AJ_T0021737.1 MGP_AJ_G0016386.1 mouse_genomes_project 1 118497459 118498716 - Dbi protein_coding retained_intron MGP_AJ_T0000473.1 MGP_AJ_G0000414.1 mouse_genomes_project 1 53376033 53377629 + TEC TEC MGP_AJ_T0019792.1 MGP_AJ_G0016001.1 mouse_genomes_project 1 51073191 51085911 + MGP_AJ_P0019792 Osgepl1 protein_coding protein_coding MGP_AJ_T0019793.1 MGP_AJ_G0016001.1 mouse_genomes_project 1 51073221 51085742 + MGP_AJ_P0019793 Osgepl1 protein_coding nonsense_mediated_decay MGP_AJ_T0019794.1 MGP_AJ_G0016001.1 mouse_genomes_project 1 51073224 51076200 + Osgepl1 protein_coding processed_transcript MGP_AJ_T0019795.1 MGP_AJ_G0016001.1 mouse_genomes_project 1 51073224 51078226 + Osgepl1 protein_coding retained_intron MGP_AJ_T0019796.1 MGP_AJ_G0016001.1 mouse_genomes_project 1 51073230 51083632 + MGP_AJ_P0019796 Osgepl1 protein_coding protein_coding MGP_AJ_T0019797.1 MGP_AJ_G0016001.1 mouse_genomes_project 1 51073240 51085735 + MGP_AJ_P0019797 Osgepl1 protein_coding nonsense_mediated_decay MGP_AJ_T0019798.1 MGP_AJ_G0016001.1 mouse_genomes_project 1 51079276 51085743 + Osgepl1 protein_coding retained_intron MGP_AJ_T0019850.1 MGP_AJ_G0016012.1 mouse_genomes_project 1 52858250 52879182 + MGP_AJ_P0019850 Coq10b protein_coding protein_coding MGP_AJ_T0019851.1 MGP_AJ_G0016012.1 mouse_genomes_project 1 52858250 52878433 + MGP_AJ_P0019851 Coq10b protein_coding protein_coding MGP_AJ_T0019852.1 MGP_AJ_G0016012.1 mouse_genomes_project 1 52858349 52859574 + Coq10b protein_coding retained_intron MGP_AJ_T0019853.1 MGP_AJ_G0016012.1 mouse_genomes_project 1 52866118 52868237 + Coq10b protein_coding retained_intron MGP_AJ_T0012095.1 MGP_AJ_G0010190.1 mouse_genomes_project 1 69040196 69040971 - processed_pseudogene processed_pseudogene MGP_AJ_T0012137.1 MGP_AJ_G0010232.1 mouse_genomes_project 1 87246998 87247241 + processed_pseudogene processed_pseudogene MGP_AJ_T0000372.1 MGP_AJ_G0000316.1 mouse_genomes_project 1 8746351 8748822 + TEC TEC MGP_AJ_T0000783.1 MGP_AJ_G0000720.1 mouse_genomes_project 1 185945876 185948146 - TEC TEC MGP_AJ_T0021354.1 MGP_AJ_G0016303.1 mouse_genomes_project 1 90823423 90824432 + MGP_AJ_P0021354 Olfr1410 protein_coding protein_coding MGP_AJ_T0021355.1 MGP_AJ_G0016303.1 mouse_genomes_project 1 90823423 90824392 + MGP_AJ_P0021355 Olfr1410 protein_coding protein_coding MGP_AJ_T0000769.1 MGP_AJ_G0000707.1 mouse_genomes_project 1 180884042 180886267 - TEC TEC MGP_AJ_T0006033.1 MGP_AJ_G0005049.1 mouse_genomes_project 1 183491945 183511164 - Gm37800 lincRNA lincRNA MGP_AJ_T0006034.1 MGP_AJ_G0005049.1 mouse_genomes_project 1 183492583 183499656 - Gm37800 lincRNA lincRNA MGP_AJ_T0005930.1 MGP_AJ_G0004970.1 mouse_genomes_project 1 137368656 137369332 - 1700019P21Rik lincRNA lincRNA MGP_AJ_T0099166.1 MGP_AJ_G0037132.1 mouse_genomes_project 1 55289143 55289300 + Gm24014 snRNA snRNA MGP_AJ_T0000617.1 MGP_AJ_G0000558.1 mouse_genomes_project 1 128173335 128177176 + TEC TEC MGP_AJ_T0098875.1 MGP_AJ_G0036858.1 mouse_genomes_project 1 103938293 103938746 - Gm28404 sense_intronic sense_intronic MGP_AJ_T0019820.1 MGP_AJ_G0016008.1 mouse_genomes_project 1 52193840 52234153 - MGP_AJ_P0019820 Gtf3c3 protein_coding protein_coding MGP_AJ_T0019821.1 MGP_AJ_G0016008.1 mouse_genomes_project 1 52215403 52219309 - Gtf3c3 protein_coding retained_intron MGP_AJ_T0019822.1 MGP_AJ_G0016008.1 mouse_genomes_project 1 52222558 52224137 - Gtf3c3 protein_coding retained_intron MGP_AJ_T0012323.1 MGP_AJ_G0010418.1 mouse_genomes_project 1 164953584 164953755 - processed_pseudogene processed_pseudogene MGP_AJ_T0021312.1 MGP_AJ_G0016291.1 mouse_genomes_project 1 89609983 89653299 - MGP_AJ_P0021312 Per2 protein_coding protein_coding MGP_AJ_T0021313.1 MGP_AJ_G0016291.1 mouse_genomes_project 1 89641653 89643798 - Per2 protein_coding processed_transcript MGP_AJ_T0002900.1 MGP_AJ_G0002729.1 mouse_genomes_project 1 134724070 134733064 + Gm26568 antisense antisense MGP_AJ_T0012268.1 MGP_AJ_G0010363.1 mouse_genomes_project 1 143583737 143584733 + processed_pseudogene processed_pseudogene MGP_AJ_T0020272.1 MGP_AJ_G0016092.1 mouse_genomes_project 1 63080120 63099112 + Pikfyve protein_coding retained_intron MGP_AJ_T0020273.1 MGP_AJ_G0016092.1 mouse_genomes_project 1 63080126 63140288 + MGP_AJ_P0020273 Pikfyve protein_coding nonsense_mediated_decay MGP_AJ_T0020274.1 MGP_AJ_G0016092.1 mouse_genomes_project 1 63080130 63119518 + Pikfyve protein_coding retained_intron MGP_AJ_T0020275.1 MGP_AJ_G0016092.1 mouse_genomes_project 1 63080131 63085893 + Pikfyve protein_coding retained_intron MGP_AJ_T0020276.1 MGP_AJ_G0016092.1 mouse_genomes_project 1 63080133 63099580 + Pikfyve protein_coding processed_transcript MGP_AJ_T0020277.1 MGP_AJ_G0016092.1 mouse_genomes_project 1 63080139 63172080 + MGP_AJ_P0020277 Pikfyve protein_coding protein_coding MGP_AJ_T0020278.1 MGP_AJ_G0016092.1 mouse_genomes_project 1 63080141 63126673 + Pikfyve protein_coding retained_intron MGP_AJ_T0020279.1 MGP_AJ_G0016092.1 mouse_genomes_project 1 63080150 63085597 + MGP_AJ_P0020279 Pikfyve protein_coding nonsense_mediated_decay MGP_AJ_T0020280.1 MGP_AJ_G0016092.1 mouse_genomes_project 1 63080187 63167397 + MGP_AJ_P0020280 Pikfyve protein_coding protein_coding MGP_AJ_T0020281.1 MGP_AJ_G0016092.1 mouse_genomes_project 1 63090169 63109668 + Pikfyve protein_coding retained_intron MGP_AJ_T0000584.1 MGP_AJ_G0000525.1 mouse_genomes_project 1 109276081 109278834 - TEC TEC MGP_AJ_T0011880.1 MGP_AJ_G0009975.1 mouse_genomes_project 1 6848330 6849264 + processed_pseudogene processed_pseudogene MGP_AJ_T0012119.1 MGP_AJ_G0010214.1 mouse_genomes_project 1 79745014 79745720 + processed_pseudogene processed_pseudogene MGP_AJ_T0012351.1 MGP_AJ_G0010446.1 mouse_genomes_project 1 180313181 180313474 - processed_pseudogene processed_pseudogene MGP_AJ_T0005801.1 MGP_AJ_G0004864.1 mouse_genomes_project 1 76554854 76571943 - 5730419F03Rik lincRNA lincRNA MGP_AJ_T0005654.1 MGP_AJ_G0004757.1 mouse_genomes_project 1 14462481 14466691 + Gm28783 lincRNA lincRNA MGP_AJ_T0024281.1 MGP_AJ_G0016938.1 mouse_genomes_project 1 192017789 192027576 + MGP_AJ_P0024281 A130010J15Rik protein_coding protein_coding MGP_AJ_T0024283.1 MGP_AJ_G0016938.1 mouse_genomes_project 1 192023211 192026042 + MGP_AJ_P0024283 A130010J15Rik protein_coding protein_coding MGP_AJ_T0024284.1 MGP_AJ_G0016938.1 mouse_genomes_project 1 192023235 192024575 + MGP_AJ_P0024284 A130010J15Rik protein_coding protein_coding MGP_AJ_T0024285.1 MGP_AJ_G0016938.1 mouse_genomes_project 1 192023320 192027576 + MGP_AJ_P0024285 A130010J15Rik protein_coding protein_coding MGP_AJ_T0024286.1 MGP_AJ_G0016938.1 mouse_genomes_project 1 192023323 192026044 + MGP_AJ_P0024286 A130010J15Rik protein_coding protein_coding MGP_AJ_T0024287.1 MGP_AJ_G0016938.1 mouse_genomes_project 1 192023323 192024170 + MGP_AJ_P0024287 A130010J15Rik protein_coding protein_coding MGP_AJ_T0024288.1 MGP_AJ_G0016938.1 mouse_genomes_project 1 192023329 192024296 + MGP_AJ_P0024288 A130010J15Rik protein_coding protein_coding MGP_AJ_T0024289.1 MGP_AJ_G0016938.1 mouse_genomes_project 1 192023487 192024339 + MGP_AJ_P0024289 A130010J15Rik protein_coding protein_coding MGP_AJ_T0000420.1 MGP_AJ_G0000362.1 mouse_genomes_project 1 23231871 23233093 + TEC TEC MGP_AJ_T0012110.1 MGP_AJ_G0010205.1 mouse_genomes_project 1 77451749 77453108 - processed_pseudogene processed_pseudogene MGP_AJ_T0012321.1 MGP_AJ_G0010416.1 mouse_genomes_project 1 164472201 164474110 + processed_pseudogene processed_pseudogene MGP_AJ_T0000500.1 MGP_AJ_G0000441.1 mouse_genomes_project 1 64667251 64671852 + TEC TEC MGP_AJ_T0011960.1 MGP_AJ_G0010055.1 mouse_genomes_project 1 32142444 32142919 - processed_pseudogene processed_pseudogene MGP_AJ_T0099157.1 MGP_AJ_G0037123.1 mouse_genomes_project 1 30761987 30762097 + Gm24901 snRNA snRNA MGP_AJ_T0005941.1 MGP_AJ_G0004980.1 mouse_genomes_project 1 152173633 152190211 - C230024C17Rik lincRNA lincRNA MGP_AJ_T0021594.1 MGP_AJ_G0016354.1 mouse_genomes_project 1 104527910 104748015 + MGP_AJ_P0021594 Phlpp1 protein_coding protein_coding MGP_AJ_T0021595.1 MGP_AJ_G0016354.1 mouse_genomes_project 1 104639024 104645023 + Phlpp1 protein_coding retained_intron MGP_AJ_T0021596.1 MGP_AJ_G0016354.1 mouse_genomes_project 1 104671467 104673247 + Phlpp1 protein_coding processed_transcript MGP_AJ_T0000804.1 MGP_AJ_G0000740.1 mouse_genomes_project 1 193606741 193607273 + TEC TEC MGP_AJ_T0012270.1 MGP_AJ_G0010365.1 mouse_genomes_project 1 144809496 144810097 + processed_pseudogene processed_pseudogene MGP_AJ_T0012278.1 MGP_AJ_G0010373.1 mouse_genomes_project 1 147527995 147529531 + processed_pseudogene processed_pseudogene MGP_AJ_T0098519.1 MGP_AJ_G0036503.1 mouse_genomes_project 1 180759823 180759939 - Gm26004 rRNA rRNA MGP_AJ_T0000535.1 MGP_AJ_G0000476.1 mouse_genomes_project 1 80759725 80760771 - TEC TEC MGP_AJ_T0019227.1 MGP_AJ_G0015893.1 mouse_genomes_project 1 32062678 32063973 + protein_coding retained_intron MGP_AJ_T0019228.1 MGP_AJ_G0015893.1 mouse_genomes_project 1 32062681 32077113 + MGP_AJ_P0019228 protein_coding protein_coding MGP_AJ_T0019229.1 MGP_AJ_G0015893.1 mouse_genomes_project 1 32062693 32074459 + MGP_AJ_P0019229 protein_coding protein_coding MGP_AJ_T0019230.1 MGP_AJ_G0015893.1 mouse_genomes_project 1 32062708 32074458 + protein_coding retained_intron MGP_AJ_T0019231.1 MGP_AJ_G0015893.1 mouse_genomes_project 1 32062740 32076975 + MGP_AJ_P0019231 protein_coding unknown_likely_coding MGP_AJ_T0019232.1 MGP_AJ_G0015893.1 mouse_genomes_project 1 32066187 32069630 + protein_coding retained_intron MGP_AJ_T0019233.1 MGP_AJ_G0015893.1 mouse_genomes_project 1 32076048 32079062 + MGP_AJ_P0019233 protein_coding protein_coding MGP_AJ_T0019234.1 MGP_AJ_G0015893.1 mouse_genomes_project 1 32077827 32079062 + protein_coding processed_transcript MGP_AJ_T0000659.1 MGP_AJ_G0000598.1 mouse_genomes_project 1 137566334 137570468 - TEC TEC MGP_AJ_T0098879.1 MGP_AJ_G0036862.1 mouse_genomes_project 1 137463222 137464802 + 4930596I21Rik sense_intronic sense_intronic MGP_AJ_T0002934.1 MGP_AJ_G0002755.1 mouse_genomes_project 1 161493117 161572687 + Gm37273 antisense antisense MGP_AJ_T0023650.1 MGP_AJ_G0016804.1 mouse_genomes_project 1 172882436 172883383 + MGP_AJ_P0023650 Olfr424 protein_coding protein_coding MGP_AJ_T0000345.1 MGP_AJ_G0000289.1 mouse_genomes_project 1 155116 156186 + TEC TEC MGP_AJ_T0005864.1 MGP_AJ_G0004918.1 mouse_genomes_project 1 105809222 105811434 - Gm15391 lincRNA lincRNA MGP_AJ_T0100472.1 MGP_AJ_G0038438.1 mouse_genomes_project 1 152541181 152541286 - Gm25336 snoRNA snoRNA MGP_AJ_T0019522.1 MGP_AJ_G0015948.1 mouse_genomes_project 1 37755501 37794781 + MGP_AJ_P0019522 Il1r2 protein_coding protein_coding MGP_AJ_T0019523.1 MGP_AJ_G0015948.1 mouse_genomes_project 1 37766135 37808070 + MGP_AJ_P0019523 Il1r2 protein_coding protein_coding MGP_AJ_T0019524.1 MGP_AJ_G0015948.1 mouse_genomes_project 1 37766229 37808058 + MGP_AJ_P0019524 Il1r2 protein_coding nonsense_mediated_decay MGP_AJ_T0019525.1 MGP_AJ_G0015948.1 mouse_genomes_project 1 37767421 37785056 + MGP_AJ_P0019525 Il1r2 protein_coding protein_coding MGP_AJ_T0011864.1 MGP_AJ_G0009959.1 mouse_genomes_project 1 4365301 4365479 - processed_pseudogene processed_pseudogene MGP_AJ_T0000382.1 MGP_AJ_G0000326.1 mouse_genomes_project 1 11165761 11168010 - TEC TEC MGP_AJ_T0020282.1 MGP_AJ_G0016093.1 mouse_genomes_project 1 63175345 63238654 + MGP_AJ_P0020282 Pth2r protein_coding protein_coding MGP_AJ_T0020283.1 MGP_AJ_G0016093.1 mouse_genomes_project 1 63203406 63282235 + MGP_AJ_P0020283 Pth2r protein_coding protein_coding MGP_AJ_T0000452.1 MGP_AJ_G0000393.1 mouse_genomes_project 1 37090679 37091564 - TEC TEC MGP_AJ_T0019240.1 MGP_AJ_G0015898.1 mouse_genomes_project 1 32273316 32409444 + MGP_AJ_P0019240 protein_coding protein_coding MGP_AJ_T0019241.1 MGP_AJ_G0015898.1 mouse_genomes_project 1 32329863 32408534 + MGP_AJ_P0019241 protein_coding protein_coding MGP_AJ_T0019242.1 MGP_AJ_G0015898.1 mouse_genomes_project 1 32346084 32403849 + MGP_AJ_P0019242 protein_coding protein_coding MGP_AJ_T0019243.1 MGP_AJ_G0015898.1 mouse_genomes_project 1 32398469 32410020 + MGP_AJ_P0019243 protein_coding protein_coding MGP_AJ_T0019244.1 MGP_AJ_G0015898.1 mouse_genomes_project 1 32398486 32405923 + protein_coding retained_intron MGP_AJ_T0019245.1 MGP_AJ_G0015898.1 mouse_genomes_project 1 32398487 32403403 + protein_coding retained_intron MGP_AJ_T0019246.1 MGP_AJ_G0015898.1 mouse_genomes_project 1 32398506 32405616 + MGP_AJ_P0019246 protein_coding nonsense_mediated_decay MGP_AJ_T0019059.1 MGP_AJ_G0015857.1 mouse_genomes_project 1 18620709 18633529 + MGP_AJ_P0019059 Tmem14a protein_coding protein_coding MGP_AJ_T0019060.1 MGP_AJ_G0015857.1 mouse_genomes_project 1 18620796 18633526 + MGP_AJ_P0019060 Tmem14a protein_coding protein_coding MGP_AJ_T0019109.1 MGP_AJ_G0015870.1 mouse_genomes_project 1 21571741 21652111 + MGP_AJ_P0019109 Col9a1 protein_coding protein_coding MGP_AJ_T0019110.1 MGP_AJ_G0015870.1 mouse_genomes_project 1 21593537 21652111 + MGP_AJ_P0019110 Col9a1 protein_coding protein_coding MGP_AJ_T0019111.1 MGP_AJ_G0015870.1 mouse_genomes_project 1 21595367 21619132 + Col9a1 protein_coding processed_transcript MGP_AJ_T0019112.1 MGP_AJ_G0015870.1 mouse_genomes_project 1 21627863 21629302 + Col9a1 protein_coding processed_transcript MGP_AJ_T0022837.1 MGP_AJ_G0016612.1 mouse_genomes_project 1 155610667 155890409 - MGP_AJ_P0022837 Rasal2 protein_coding protein_coding MGP_AJ_T0022838.1 MGP_AJ_G0016612.1 mouse_genomes_project 1 155616011 155889748 - MGP_AJ_P0022838 Rasal2 protein_coding protein_coding MGP_AJ_T0022839.1 MGP_AJ_G0016612.1 mouse_genomes_project 1 155652444 155723137 - MGP_AJ_P0022839 Rasal2 protein_coding protein_coding MGP_AJ_T0022840.1 MGP_AJ_G0016612.1 mouse_genomes_project 1 155652637 155736312 - MGP_AJ_P0022840 Rasal2 protein_coding protein_coding MGP_AJ_T0022841.1 MGP_AJ_G0016612.1 mouse_genomes_project 1 155655564 155657907 - Rasal2 protein_coding processed_transcript MGP_AJ_T0022842.1 MGP_AJ_G0016612.1 mouse_genomes_project 1 155655564 155708606 - MGP_AJ_P0022842 Rasal2 protein_coding protein_coding MGP_AJ_T0022843.1 MGP_AJ_G0016612.1 mouse_genomes_project 1 155763963 155890409 - Rasal2 protein_coding retained_intron MGP_AJ_T0023071.1 MGP_AJ_G0016653.1 mouse_genomes_project 1 162212444 162229111 - MGP_AJ_P0023071 Mettl11b protein_coding protein_coding MGP_AJ_T0023072.1 MGP_AJ_G0016653.1 mouse_genomes_project 1 162213187 162229111 - MGP_AJ_P0023072 Mettl11b protein_coding nonsense_mediated_decay MGP_AJ_T0002791.1 MGP_AJ_G0002648.1 mouse_genomes_project 1 38259425 38268966 - Gm35801 antisense antisense MGP_AJ_T0002792.1 MGP_AJ_G0002648.1 mouse_genomes_project 1 38259445 38268952 - Gm35801 antisense antisense MGP_AJ_T0021777.1 MGP_AJ_G0016397.1 mouse_genomes_project 1 123752321 123798014 - MGP_AJ_P0021777 protein_coding unknown_likely_coding MGP_AJ_T0021778.1 MGP_AJ_G0016397.1 mouse_genomes_project 1 123756777 123798167 - MGP_AJ_P0021778 protein_coding nonsense_mediated_decay MGP_AJ_T0021779.1 MGP_AJ_G0016397.1 mouse_genomes_project 1 123758672 123760498 - protein_coding retained_intron MGP_AJ_T0021780.1 MGP_AJ_G0016397.1 mouse_genomes_project 1 123768013 123771091 - protein_coding retained_intron MGP_AJ_T0021781.1 MGP_AJ_G0016397.1 mouse_genomes_project 1 123768032 123798413 - MGP_AJ_P0021781 protein_coding protein_coding MGP_AJ_T0021782.1 MGP_AJ_G0016397.1 mouse_genomes_project 1 123768062 123797287 - MGP_AJ_P0021782 protein_coding protein_coding MGP_AJ_T0021783.1 MGP_AJ_G0016397.1 mouse_genomes_project 1 123769441 123798140 - MGP_AJ_P0021783 protein_coding protein_coding MGP_AJ_T0021784.1 MGP_AJ_G0016397.1 mouse_genomes_project 1 123769498 123798393 - MGP_AJ_P0021784 protein_coding protein_coding MGP_AJ_T0021785.1 MGP_AJ_G0016397.1 mouse_genomes_project 1 123769507 123798156 - MGP_AJ_P0021785 protein_coding protein_coding MGP_AJ_T0021786.1 MGP_AJ_G0016397.1 mouse_genomes_project 1 123778700 123798114 - protein_coding retained_intron MGP_AJ_T0005849.1 MGP_AJ_G0004906.1 mouse_genomes_project 1 94237115 94270692 - 1700063A18Rik lincRNA lincRNA MGP_AJ_T0102192.1 MGP_AJ_G0039935.1 mouse_genomes_project 1 171717529 171718730 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0099199.1 MGP_AJ_G0037165.1 mouse_genomes_project 1 127222977 127223088 - Gm23056 snRNA snRNA MGP_AJ_T0012227.1 MGP_AJ_G0010322.1 mouse_genomes_project 1 122142057 122143250 + processed_pseudogene processed_pseudogene MGP_AJ_T0022171.1 MGP_AJ_G0016484.1 mouse_genomes_project 1 132660626 132695882 - MGP_AJ_P0022171 Adora1 protein_coding protein_coding MGP_AJ_T0022172.1 MGP_AJ_G0016484.1 mouse_genomes_project 1 132660628 132696735 - MGP_AJ_P0022172 Adora1 protein_coding protein_coding MGP_AJ_T0022173.1 MGP_AJ_G0016484.1 mouse_genomes_project 1 132662752 132696701 - MGP_AJ_P0022173 Adora1 protein_coding protein_coding MGP_AJ_T0022174.1 MGP_AJ_G0016484.1 mouse_genomes_project 1 132664800 132696668 - MGP_AJ_P0022174 Adora1 protein_coding protein_coding MGP_AJ_T0005818.1 MGP_AJ_G0004877.1 mouse_genomes_project 1 85127580 85128343 + lincRNA lincRNA MGP_AJ_T0000675.1 MGP_AJ_G0000614.1 mouse_genomes_project 1 148726488 148728635 + TEC TEC MGP_AJ_T0021291.1 MGP_AJ_G0016287.1 mouse_genomes_project 1 89544433 89555884 + MGP_AJ_P0021291 Klhl30 protein_coding protein_coding MGP_AJ_T0006037.1 MGP_AJ_G0005052.1 mouse_genomes_project 1 183961628 183966866 + 4930433J02Rik lincRNA lincRNA MGP_AJ_T0022622.1 MGP_AJ_G0016574.1 mouse_genomes_project 1 151264024 151330398 - MGP_AJ_P0022622 Smg7 protein_coding protein_coding MGP_AJ_T0022623.1 MGP_AJ_G0016574.1 mouse_genomes_project 1 151264025 151305203 - MGP_AJ_P0022623 Smg7 protein_coding protein_coding MGP_AJ_T0022624.1 MGP_AJ_G0016574.1 mouse_genomes_project 1 151265899 151330422 - MGP_AJ_P0022624 Smg7 protein_coding protein_coding MGP_AJ_T0022625.1 MGP_AJ_G0016574.1 mouse_genomes_project 1 151272291 151298193 - Smg7 protein_coding processed_transcript MGP_AJ_T0022626.1 MGP_AJ_G0016574.1 mouse_genomes_project 1 151272313 151276035 - Smg7 protein_coding processed_transcript MGP_AJ_T0022627.1 MGP_AJ_G0016574.1 mouse_genomes_project 1 151272955 151275950 - Smg7 protein_coding retained_intron MGP_AJ_T0021773.1 MGP_AJ_G0016396.1 mouse_genomes_project 1 121694112 122426919 - MGP_AJ_P0021773 Dpp10 protein_coding protein_coding MGP_AJ_T0021774.1 MGP_AJ_G0016396.1 mouse_genomes_project 1 121707294 122426514 - MGP_AJ_P0021774 Dpp10 protein_coding protein_coding MGP_AJ_T0021775.1 MGP_AJ_G0016396.1 mouse_genomes_project 1 121987747 122034503 - Dpp10 protein_coding processed_transcript MGP_AJ_T0021776.1 MGP_AJ_G0016396.1 mouse_genomes_project 1 122009382 122426606 - Dpp10 protein_coding processed_transcript MGP_AJ_T0020893.1 MGP_AJ_G0016202.1 mouse_genomes_project 1 80709322 80721808 - MGP_AJ_P0020893 Tm4sf20 protein_coding protein_coding MGP_AJ_T0020894.1 MGP_AJ_G0016202.1 mouse_genomes_project 1 80710075 80721808 - Tm4sf20 protein_coding processed_transcript MGP_AJ_T0000622.1 MGP_AJ_G0000563.1 mouse_genomes_project 1 129161615 129163297 - TEC TEC MGP_AJ_T0102158.1 MGP_AJ_G0039901.1 mouse_genomes_project 1 86209355 86209753 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0020895.1 MGP_AJ_G0016203.1 mouse_genomes_project 1 80795565 80857050 + MGP_AJ_P0020895 Agfg1 protein_coding protein_coding MGP_AJ_T0020896.1 MGP_AJ_G0016203.1 mouse_genomes_project 1 80795579 80852249 + MGP_AJ_P0020896 Agfg1 protein_coding protein_coding MGP_AJ_T0020897.1 MGP_AJ_G0016203.1 mouse_genomes_project 1 80795751 80852249 + MGP_AJ_P0020897 Agfg1 protein_coding protein_coding MGP_AJ_T0020898.1 MGP_AJ_G0016203.1 mouse_genomes_project 1 80795753 80852147 + MGP_AJ_P0020898 Agfg1 protein_coding protein_coding MGP_AJ_T0020899.1 MGP_AJ_G0016203.1 mouse_genomes_project 1 80795756 80851543 + MGP_AJ_P0020899 Agfg1 protein_coding protein_coding MGP_AJ_T0020900.1 MGP_AJ_G0016203.1 mouse_genomes_project 1 80795756 80851389 + MGP_AJ_P0020900 Agfg1 protein_coding protein_coding MGP_AJ_T0020901.1 MGP_AJ_G0016203.1 mouse_genomes_project 1 80795816 80850990 + MGP_AJ_P0020901 Agfg1 protein_coding protein_coding MGP_AJ_T0020902.1 MGP_AJ_G0016203.1 mouse_genomes_project 1 80796155 80835990 + MGP_AJ_P0020902 Agfg1 protein_coding protein_coding MGP_AJ_T0011993.1 MGP_AJ_G0010088.1 mouse_genomes_project 1 42572836 42573503 - processed_pseudogene processed_pseudogene MGP_AJ_T0005935.1 MGP_AJ_G0004975.1 mouse_genomes_project 1 147764420 147807489 - Gm29398 lincRNA lincRNA MGP_AJ_T0005936.1 MGP_AJ_G0004975.1 mouse_genomes_project 1 147775403 147807488 - Gm29398 lincRNA lincRNA MGP_AJ_T0002793.1 MGP_AJ_G0002649.1 mouse_genomes_project 1 38380994 38387316 - Gm37623 antisense antisense MGP_AJ_T0099142.1 MGP_AJ_G0037108.1 mouse_genomes_project 1 877092 877150 - Gm27396 snRNA snRNA MGP_AJ_T0099209.1 MGP_AJ_G0037175.1 mouse_genomes_project 1 138281559 138281663 + Gm26271 snRNA snRNA MGP_AJ_T0002771.1 MGP_AJ_G0002632.1 mouse_genomes_project 1 32042458 32047667 - Gm28306 antisense antisense MGP_AJ_T0017050.1 MGP_AJ_G0015094.1 mouse_genomes_project 1 159517870 159520974 + Gas5 processed_transcript retained_intron MGP_AJ_T0017051.1 MGP_AJ_G0015094.1 mouse_genomes_project 1 159518053 159521985 + Gas5 processed_transcript lincRNA MGP_AJ_T0017052.1 MGP_AJ_G0015094.1 mouse_genomes_project 1 159518375 159521981 + Gas5 processed_transcript lincRNA MGP_AJ_T0017053.1 MGP_AJ_G0015094.1 mouse_genomes_project 1 159518513 159521983 + Gas5 processed_transcript lincRNA MGP_AJ_T0017054.1 MGP_AJ_G0015094.1 mouse_genomes_project 1 159518609 159520989 + Gas5 processed_transcript retained_intron MGP_AJ_T0017055.1 MGP_AJ_G0015094.1 mouse_genomes_project 1 159518609 159521983 + Gas5 processed_transcript lincRNA MGP_AJ_T0017056.1 MGP_AJ_G0015094.1 mouse_genomes_project 1 159518609 159521979 + Gas5 processed_transcript retained_intron MGP_AJ_T0017057.1 MGP_AJ_G0015094.1 mouse_genomes_project 1 159518612 159521980 + Gas5 processed_transcript retained_intron MGP_AJ_T0017058.1 MGP_AJ_G0015094.1 mouse_genomes_project 1 159518612 159521985 + Gas5 processed_transcript retained_intron MGP_AJ_T0017059.1 MGP_AJ_G0015094.1 mouse_genomes_project 1 159518612 159521985 + Gas5 processed_transcript lincRNA MGP_AJ_T0017060.1 MGP_AJ_G0015094.1 mouse_genomes_project 1 159518612 159520498 + Gas5 processed_transcript retained_intron MGP_AJ_T0017061.1 MGP_AJ_G0015094.1 mouse_genomes_project 1 159518613 159521685 + Gas5 processed_transcript retained_intron MGP_AJ_T0017062.1 MGP_AJ_G0015094.1 mouse_genomes_project 1 159518614 159521003 + Gas5 processed_transcript retained_intron MGP_AJ_T0017063.1 MGP_AJ_G0015094.1 mouse_genomes_project 1 159518618 159520069 + Gas5 processed_transcript retained_intron MGP_AJ_T0017064.1 MGP_AJ_G0015094.1 mouse_genomes_project 1 159518624 159521985 + Gas5 processed_transcript retained_intron MGP_AJ_T0017065.1 MGP_AJ_G0015094.1 mouse_genomes_project 1 159518630 159521985 + Gas5 processed_transcript retained_intron MGP_AJ_T0017066.1 MGP_AJ_G0015094.1 mouse_genomes_project 1 159518632 159521921 + Gas5 processed_transcript retained_intron MGP_AJ_T0017067.1 MGP_AJ_G0015094.1 mouse_genomes_project 1 159518634 159521985 + Gas5 processed_transcript retained_intron MGP_AJ_T0017068.1 MGP_AJ_G0015094.1 mouse_genomes_project 1 159519464 159520330 + Gas5 processed_transcript retained_intron MGP_AJ_T0017069.1 MGP_AJ_G0015094.1 mouse_genomes_project 1 159520136 159521985 + Gas5 processed_transcript retained_intron MGP_AJ_T0017070.1 MGP_AJ_G0015094.1 mouse_genomes_project 1 159520731 159521978 + Gas5 processed_transcript retained_intron MGP_AJ_T0017071.1 MGP_AJ_G0015094.1 mouse_genomes_project 1 159520752 159521568 + Gas5 processed_transcript retained_intron MGP_AJ_T0017072.1 MGP_AJ_G0015094.1 mouse_genomes_project 1 159520792 159521981 + Gas5 processed_transcript retained_intron MGP_AJ_T0017073.1 MGP_AJ_G0015094.1 mouse_genomes_project 1 159521162 159521983 + Gas5 processed_transcript retained_intron MGP_AJ_T0017074.1 MGP_AJ_G0015094.1 mouse_genomes_project 1 159521224 159521985 + Gas5 processed_transcript retained_intron MGP_AJ_T0000581.1 MGP_AJ_G0000522.1 mouse_genomes_project 1 104967169 104969253 - TEC TEC MGP_AJ_T0017014.1 MGP_AJ_G0015082.1 mouse_genomes_project 1 96312892 96318175 - B230216N24Rik processed_transcript retained_intron MGP_AJ_T0017015.1 MGP_AJ_G0015082.1 mouse_genomes_project 1 96312903 96330395 - B230216N24Rik processed_transcript sense_intronic MGP_AJ_T0017016.1 MGP_AJ_G0015082.1 mouse_genomes_project 1 96313493 96330429 - B230216N24Rik processed_transcript sense_intronic MGP_AJ_T0017017.1 MGP_AJ_G0015082.1 mouse_genomes_project 1 96313644 96340295 - B230216N24Rik processed_transcript sense_intronic MGP_AJ_T0017018.1 MGP_AJ_G0015082.1 mouse_genomes_project 1 96328452 96330390 - B230216N24Rik processed_transcript retained_intron MGP_AJ_T0009549.1 MGP_AJ_G0007671.1 mouse_genomes_project 1 165797212 165797313 + Mir6347 miRNA miRNA MGP_AJ_T0012063.1 MGP_AJ_G0010158.1 mouse_genomes_project 1 59116957 59117659 - processed_pseudogene processed_pseudogene MGP_AJ_T0022683.1 MGP_AJ_G0016585.1 mouse_genomes_project 1 152307943 152359843 - MGP_AJ_P0022683 Teddm2 protein_coding protein_coding MGP_AJ_T0022684.1 MGP_AJ_G0016585.1 mouse_genomes_project 1 152307943 152309597 - MGP_AJ_P0022684 Teddm2 protein_coding protein_coding MGP_AJ_T0022686.1 MGP_AJ_G0016585.1 mouse_genomes_project 1 152356748 152359863 - Teddm2 protein_coding retained_intron MGP_AJ_T0012198.1 MGP_AJ_G0010293.1 mouse_genomes_project 1 111867776 111868312 - processed_pseudogene processed_pseudogene MGP_AJ_T0022449.1 MGP_AJ_G0016542.1 mouse_genomes_project 1 138767018 139137486 + MGP_AJ_P0022449 Kcnt2 protein_coding protein_coding MGP_AJ_T0022450.1 MGP_AJ_G0016542.1 mouse_genomes_project 1 138767055 139135201 + MGP_AJ_P0022450 Kcnt2 protein_coding protein_coding MGP_AJ_T0022451.1 MGP_AJ_G0016542.1 mouse_genomes_project 1 138767067 139135498 + MGP_AJ_P0022451 Kcnt2 protein_coding protein_coding MGP_AJ_T0022452.1 MGP_AJ_G0016542.1 mouse_genomes_project 1 138967260 138968268 + Kcnt2 protein_coding retained_intron MGP_AJ_T0022453.1 MGP_AJ_G0016542.1 mouse_genomes_project 1 138967425 139049355 + Kcnt2 protein_coding processed_transcript MGP_AJ_T0022454.1 MGP_AJ_G0016542.1 mouse_genomes_project 1 139042092 139099295 + MGP_AJ_P0022454 Kcnt2 protein_coding nonsense_mediated_decay MGP_AJ_T0023635.1 MGP_AJ_G0016794.1 mouse_genomes_project 1 172463738 172473214 - MGP_AJ_P0023635 protein_coding protein_coding MGP_AJ_T0017002.1 MGP_AJ_G0015077.1 mouse_genomes_project 1 80647832 80677768 - C430014B12Rik processed_transcript antisense MGP_AJ_T0017003.1 MGP_AJ_G0015077.1 mouse_genomes_project 1 80672561 80677820 - C430014B12Rik processed_transcript antisense MGP_AJ_T0017004.1 MGP_AJ_G0015077.1 mouse_genomes_project 1 80674421 80677798 - C430014B12Rik processed_transcript retained_intron MGP_AJ_T0005908.1 MGP_AJ_G0004953.1 mouse_genomes_project 1 132425386 132437993 + Gm1627 lincRNA lincRNA MGP_AJ_T0099174.1 MGP_AJ_G0037140.1 mouse_genomes_project 1 66292592 66292686 - Gm25542 snRNA snRNA MGP_AJ_T0023901.1 MGP_AJ_G0016861.1 mouse_genomes_project 1 179987003 180050923 - MGP_AJ_P0023901 Nvl protein_coding protein_coding MGP_AJ_T0023902.1 MGP_AJ_G0016861.1 mouse_genomes_project 1 179991500 179994100 - Nvl protein_coding processed_transcript MGP_AJ_T0023903.1 MGP_AJ_G0016861.1 mouse_genomes_project 1 179993591 179996475 - Nvl protein_coding retained_intron MGP_AJ_T0023904.1 MGP_AJ_G0016861.1 mouse_genomes_project 1 179996933 180006480 - Nvl protein_coding retained_intron MGP_AJ_T0023905.1 MGP_AJ_G0016861.1 mouse_genomes_project 1 180020325 180050826 - MGP_AJ_P0023905 Nvl protein_coding unknown_likely_coding MGP_AJ_T0023906.1 MGP_AJ_G0016861.1 mouse_genomes_project 1 180042736 180045156 - Nvl protein_coding retained_intron MGP_AJ_T0102163.1 MGP_AJ_G0039906.1 mouse_genomes_project 1 86266335 86267115 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0023516.1 MGP_AJ_G0016757.1 mouse_genomes_project 1 170694531 170703103 + MGP_AJ_P0023516 Pex19 protein_coding protein_coding MGP_AJ_T0023517.1 MGP_AJ_G0016757.1 mouse_genomes_project 1 170694532 170698774 + Pex19 protein_coding retained_intron MGP_AJ_T0023518.1 MGP_AJ_G0016757.1 mouse_genomes_project 1 170694538 170704312 + MGP_AJ_P0023518 Pex19 protein_coding protein_coding MGP_AJ_T0023519.1 MGP_AJ_G0016757.1 mouse_genomes_project 1 170694549 170697940 + Pex19 protein_coding retained_intron MGP_AJ_T0023520.1 MGP_AJ_G0016757.1 mouse_genomes_project 1 170694549 170696667 + Pex19 protein_coding retained_intron MGP_AJ_T0023521.1 MGP_AJ_G0016757.1 mouse_genomes_project 1 170701776 170702520 + Pex19 protein_coding retained_intron MGP_AJ_T0011256.1 MGP_AJ_G0009378.1 mouse_genomes_project 1 139822876 139822990 + Gm22016 misc_RNA misc_RNA MGP_AJ_T0000478.1 MGP_AJ_G0000419.1 mouse_genomes_project 1 57343145 57344783 - TEC TEC MGP_AJ_T0023421.1 MGP_AJ_G0016734.1 mouse_genomes_project 1 169869418 169875760 - MGP_AJ_P0023421 Ufc1 protein_coding protein_coding MGP_AJ_T0023422.1 MGP_AJ_G0016734.1 mouse_genomes_project 1 169869420 169871279 - Ufc1 protein_coding retained_intron MGP_AJ_T0023423.1 MGP_AJ_G0016734.1 mouse_genomes_project 1 169869549 169875677 - MGP_AJ_P0023423 Ufc1 protein_coding nonsense_mediated_decay MGP_AJ_T0023424.1 MGP_AJ_G0016734.1 mouse_genomes_project 1 169869567 169875723 - MGP_AJ_P0023424 Ufc1 protein_coding protein_coding MGP_AJ_T0023425.1 MGP_AJ_G0016734.1 mouse_genomes_project 1 169869632 169875676 - Ufc1 protein_coding retained_intron MGP_AJ_T0017086.1 MGP_AJ_G0015101.1 mouse_genomes_project 1 176234209 176236453 + Gm29856 processed_transcript processed_transcript MGP_AJ_T0017087.1 MGP_AJ_G0015101.1 mouse_genomes_project 1 176235431 176236454 + Gm29856 processed_transcript processed_transcript MGP_AJ_T0000627.1 MGP_AJ_G0000568.1 mouse_genomes_project 1 130544189 130550148 + TEC TEC MGP_AJ_T0022693.1 MGP_AJ_G0016589.1 mouse_genomes_project 1 152856859 153193136 - MGP_AJ_P0022693 Cacna1e protein_coding protein_coding MGP_AJ_T0022694.1 MGP_AJ_G0016589.1 mouse_genomes_project 1 152858647 153192700 - MGP_AJ_P0022694 Cacna1e protein_coding protein_coding MGP_AJ_T0022695.1 MGP_AJ_G0016589.1 mouse_genomes_project 1 152864522 153192699 - MGP_AJ_P0022695 Cacna1e protein_coding unknown_likely_coding MGP_AJ_T0022696.1 MGP_AJ_G0016589.1 mouse_genomes_project 1 152934029 152941662 - Cacna1e protein_coding retained_intron MGP_AJ_T0022697.1 MGP_AJ_G0016589.1 mouse_genomes_project 1 152946040 153289578 - Cacna1e protein_coding retained_intron MGP_AJ_T0022698.1 MGP_AJ_G0016589.1 mouse_genomes_project 1 153165731 153369783 - Cacna1e protein_coding retained_intron MGP_AJ_T0022699.1 MGP_AJ_G0016589.1 mouse_genomes_project 1 153367447 153369306 - Cacna1e protein_coding retained_intron MGP_AJ_T0000463.1 MGP_AJ_G0000404.1 mouse_genomes_project 1 45215866 45217809 - TEC TEC MGP_AJ_T0005983.1 MGP_AJ_G0005011.1 mouse_genomes_project 1 164533146 164570931 + Gm26665 lincRNA lincRNA MGP_AJ_T0000594.1 MGP_AJ_G0000535.1 mouse_genomes_project 1 121739241 121742750 - TEC TEC MGP_AJ_T0011847.1 MGP_AJ_G0009942.1 mouse_genomes_project 1 1800267 1801732 - processed_pseudogene processed_pseudogene MGP_AJ_T0011925.1 MGP_AJ_G0010020.1 mouse_genomes_project 1 22415783 22416639 + processed_pseudogene processed_pseudogene MGP_AJ_T0024044.1 MGP_AJ_G0016892.1 mouse_genomes_project 1 184076206 184159818 + MGP_AJ_P0024044 Rab3gap2 protein_coding protein_coding MGP_AJ_T0024045.1 MGP_AJ_G0016892.1 mouse_genomes_project 1 184076206 184162392 + MGP_AJ_P0024045 Rab3gap2 protein_coding protein_coding MGP_AJ_T0024046.1 MGP_AJ_G0016892.1 mouse_genomes_project 1 184076267 184078542 + Rab3gap2 protein_coding retained_intron MGP_AJ_T0024047.1 MGP_AJ_G0016892.1 mouse_genomes_project 1 184138695 184162377 + Rab3gap2 protein_coding retained_intron MGP_AJ_T0024048.1 MGP_AJ_G0016892.1 mouse_genomes_project 1 184138858 184160356 + Rab3gap2 protein_coding retained_intron MGP_AJ_T0024049.1 MGP_AJ_G0016892.1 mouse_genomes_project 1 184153427 184157328 + Rab3gap2 protein_coding retained_intron MGP_AJ_T0011996.1 MGP_AJ_G0010091.1 mouse_genomes_project 1 43193748 43194272 - processed_pseudogene processed_pseudogene MGP_AJ_T0012141.1 MGP_AJ_G0010236.1 mouse_genomes_project 1 89664067 89664260 - processed_pseudogene processed_pseudogene MGP_AJ_T0022335.1 MGP_AJ_G0016517.1 mouse_genomes_project 1 134556620 134557187 + MGP_AJ_P0022335 Ascl5 protein_coding protein_coding MGP_AJ_T0002794.1 MGP_AJ_G0002650.1 mouse_genomes_project 1 38459826 38475307 + Gm37915 antisense antisense MGP_AJ_T0022237.1 MGP_AJ_G0016498.1 mouse_genomes_project 1 133471227 133595229 - MGP_AJ_P0022237 Lgr6 protein_coding protein_coding MGP_AJ_T0022238.1 MGP_AJ_G0016498.1 mouse_genomes_project 1 133474834 133594955 - MGP_AJ_P0022238 Lgr6 protein_coding protein_coding MGP_AJ_T0022239.1 MGP_AJ_G0016498.1 mouse_genomes_project 1 133491012 133509897 - Lgr6 protein_coding processed_transcript MGP_AJ_T0000786.1 MGP_AJ_G0000723.1 mouse_genomes_project 1 186525143 186525636 - TEC TEC MGP_AJ_T0102183.1 MGP_AJ_G0039926.1 mouse_genomes_project 1 132983232 132987381 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0002833.1 MGP_AJ_G0002676.1 mouse_genomes_project 1 72248185 72248891 + Gm28364 antisense antisense MGP_AJ_T0102144.1 MGP_AJ_G0039888.1 mouse_genomes_project 1 18805855 18806950 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0023578.1 MGP_AJ_G0016770.1 mouse_genomes_project 1 171104899 171110057 + Cfap45 protein_coding retained_intron MGP_AJ_T0023579.1 MGP_AJ_G0016770.1 mouse_genomes_project 1 171105142 171131551 + MGP_AJ_P0023579 Cfap45 protein_coding protein_coding MGP_AJ_T0023580.1 MGP_AJ_G0016770.1 mouse_genomes_project 1 171105234 171118533 + Cfap45 protein_coding retained_intron MGP_AJ_T0023581.1 MGP_AJ_G0016770.1 mouse_genomes_project 1 171105237 171118427 + MGP_AJ_P0023581 Cfap45 protein_coding protein_coding MGP_AJ_T0023582.1 MGP_AJ_G0016770.1 mouse_genomes_project 1 171105279 171118404 + MGP_AJ_P0023582 Cfap45 protein_coding protein_coding MGP_AJ_T0023583.1 MGP_AJ_G0016770.1 mouse_genomes_project 1 171111874 171118487 + MGP_AJ_P0023583 Cfap45 protein_coding protein_coding MGP_AJ_T0023584.1 MGP_AJ_G0016770.1 mouse_genomes_project 1 171112235 171118487 + MGP_AJ_P0023584 Cfap45 protein_coding protein_coding MGP_AJ_T0023585.1 MGP_AJ_G0016770.1 mouse_genomes_project 1 171123409 171126365 + MGP_AJ_P0023585 Cfap45 protein_coding protein_coding MGP_AJ_T0005839.1 MGP_AJ_G0004897.1 mouse_genomes_project 1 89804495 89817940 + Gm28380 lincRNA lincRNA MGP_AJ_T0005677.1 MGP_AJ_G0004778.1 mouse_genomes_project 1 33220358 33246054 - Gm37068 lincRNA lincRNA MGP_AJ_T0000614.1 MGP_AJ_G0000555.1 mouse_genomes_project 1 127632625 127635112 + TEC TEC MGP_AJ_T0012228.1 MGP_AJ_G0010323.1 mouse_genomes_project 1 122192599 122193481 - processed_pseudogene processed_pseudogene MGP_AJ_T0100485.1 MGP_AJ_G0038451.1 mouse_genomes_project 1 159521750 159521826 + Gm25789 snoRNA snoRNA MGP_AJ_T0022645.1 MGP_AJ_G0016578.1 mouse_genomes_project 1 151870185 151898510 + MGP_AJ_P0022645 Shcbp1l protein_coding protein_coding MGP_AJ_T0022646.1 MGP_AJ_G0016578.1 mouse_genomes_project 1 151870195 151885873 + MGP_AJ_P0022646 Shcbp1l protein_coding nonsense_mediated_decay MGP_AJ_T0022647.1 MGP_AJ_G0016578.1 mouse_genomes_project 1 151891298 151894929 + Shcbp1l protein_coding retained_intron MGP_AJ_T0011997.1 MGP_AJ_G0010092.1 mouse_genomes_project 1 43200526 43201499 - processed_pseudogene processed_pseudogene MGP_AJ_T0000465.1 MGP_AJ_G0000406.1 mouse_genomes_project 1 49309682 49312053 - TEC TEC MGP_AJ_T0000634.1 MGP_AJ_G0000574.1 mouse_genomes_project 1 132914615 132915597 - TEC TEC MGP_AJ_T0012097.1 MGP_AJ_G0010192.1 mouse_genomes_project 1 69600275 69600626 - processed_pseudogene processed_pseudogene MGP_AJ_T0019680.1 MGP_AJ_G0015982.1 mouse_genomes_project 1 44605802 44661599 - MGP_AJ_P0019680 Slc39a10 protein_coding protein_coding MGP_AJ_T0019681.1 MGP_AJ_G0015982.1 mouse_genomes_project 1 44622581 44640932 - Slc39a10 protein_coding retained_intron MGP_AJ_T0019682.1 MGP_AJ_G0015982.1 mouse_genomes_project 1 44640672 44699866 - MGP_AJ_P0019682 Slc39a10 protein_coding protein_coding MGP_AJ_T0019683.1 MGP_AJ_G0015982.1 mouse_genomes_project 1 44640770 44695090 - MGP_AJ_P0019683 Slc39a10 protein_coding protein_coding MGP_AJ_T0020808.1 MGP_AJ_G0016183.1 mouse_genomes_project 1 76470865 76488137 + MGP_AJ_P0020808 Mogat1 protein_coding protein_coding MGP_AJ_T0020809.1 MGP_AJ_G0016183.1 mouse_genomes_project 1 76471034 76489677 + MGP_AJ_P0020809 Mogat1 protein_coding protein_coding MGP_AJ_T0020810.1 MGP_AJ_G0016183.1 mouse_genomes_project 1 76471043 76498536 + MGP_AJ_P0020810 Mogat1 protein_coding protein_coding MGP_AJ_T0020811.1 MGP_AJ_G0016183.1 mouse_genomes_project 1 76471688 76483295 + MGP_AJ_P0020811 Mogat1 protein_coding protein_coding MGP_AJ_T0020812.1 MGP_AJ_G0016183.1 mouse_genomes_project 1 76471743 76498538 + MGP_AJ_P0020812 Mogat1 protein_coding protein_coding MGP_AJ_T0020813.1 MGP_AJ_G0016183.1 mouse_genomes_project 1 76497992 76498538 + Mogat1 protein_coding processed_transcript MGP_AJ_T0000529.1 MGP_AJ_G0000470.1 mouse_genomes_project 1 78630978 78634612 - TEC TEC MGP_AJ_T0020743.1 MGP_AJ_G0016171.1 mouse_genomes_project 1 73373538 73398412 + MGP_AJ_P0020743 Asic4 protein_coding protein_coding MGP_AJ_T0020744.1 MGP_AJ_G0016171.1 mouse_genomes_project 1 73373801 73398415 + MGP_AJ_P0020744 Asic4 protein_coding protein_coding MGP_AJ_T0011926.1 MGP_AJ_G0010021.1 mouse_genomes_project 1 22624730 22625173 + processed_pseudogene processed_pseudogene MGP_AJ_T0012044.1 MGP_AJ_G0010139.1 mouse_genomes_project 1 56462869 56470621 + processed_pseudogene processed_pseudogene MGP_AJ_T0009475.1 MGP_AJ_G0007597.1 mouse_genomes_project 1 26842667 26842761 - Gm23785 miRNA miRNA MGP_AJ_T0012040.1 MGP_AJ_G0010135.1 mouse_genomes_project 1 55116055 55117032 - processed_pseudogene processed_pseudogene MGP_AJ_T0023597.1 MGP_AJ_G0016777.1 mouse_genomes_project 1 171537525 171538961 + MGP_AJ_P0023597 Olfr16 protein_coding protein_coding MGP_AJ_T0024070.1 MGP_AJ_G0016897.1 mouse_genomes_project 1 184956839 184980845 - MGP_AJ_P0024070 Lyplal1 protein_coding protein_coding MGP_AJ_T0024071.1 MGP_AJ_G0016897.1 mouse_genomes_project 1 184957641 184980823 - Lyplal1 protein_coding processed_transcript MGP_AJ_T0012104.1 MGP_AJ_G0010199.1 mouse_genomes_project 1 73498150 73498642 + processed_pseudogene processed_pseudogene MGP_AJ_T0100422.1 MGP_AJ_G0038388.1 mouse_genomes_project 1 43430893 43431024 + Gm23974 snoRNA snoRNA MGP_AJ_T0009559.1 MGP_AJ_G0007681.1 mouse_genomes_project 1 177225407 177225528 - Gm27458 miRNA miRNA MGP_AJ_T0021171.1 MGP_AJ_G0016255.1 mouse_genomes_project 1 86127149 86334105 + MGP_AJ_P0021171 Ugt1a9 protein_coding protein_coding MGP_AJ_T0000495.1 MGP_AJ_G0000436.1 mouse_genomes_project 1 61149571 61150050 - TEC TEC MGP_AJ_T0005692.1 MGP_AJ_G0004790.1 mouse_genomes_project 1 38866151 38879930 - 4930448I06Rik lincRNA lincRNA MGP_AJ_T0021217.1 MGP_AJ_G0016274.1 mouse_genomes_project 1 88242208 88350525 - MGP_AJ_P0021217 Iqca protein_coding protein_coding MGP_AJ_T0021218.1 MGP_AJ_G0016274.1 mouse_genomes_project 1 88242211 88289663 - Iqca protein_coding processed_transcript MGP_AJ_T0021219.1 MGP_AJ_G0016274.1 mouse_genomes_project 1 88242702 88350299 - MGP_AJ_P0021219 Iqca protein_coding unknown_likely_coding MGP_AJ_T0021220.1 MGP_AJ_G0016274.1 mouse_genomes_project 1 88259340 88266794 - MGP_AJ_P0021220 Iqca protein_coding protein_coding MGP_AJ_T0021221.1 MGP_AJ_G0016274.1 mouse_genomes_project 1 88281851 88289663 - Iqca protein_coding processed_transcript MGP_AJ_T0021222.1 MGP_AJ_G0016274.1 mouse_genomes_project 1 88323942 88350525 - Iqca protein_coding processed_transcript MGP_AJ_T0022978.1 MGP_AJ_G0016634.1 mouse_genomes_project 1 159996315 160006936 + MGP_AJ_P0022978 Tnfsf18 protein_coding protein_coding MGP_AJ_T0022336.1 MGP_AJ_G0016518.1 mouse_genomes_project 1 134559643 134626293 + MGP_AJ_P0022336 Cacna1s protein_coding protein_coding MGP_AJ_T0022337.1 MGP_AJ_G0016518.1 mouse_genomes_project 1 134559677 134626298 + MGP_AJ_P0022337 Cacna1s protein_coding protein_coding MGP_AJ_T0022338.1 MGP_AJ_G0016518.1 mouse_genomes_project 1 134559794 134626585 + MGP_AJ_P0022338 Cacna1s protein_coding protein_coding MGP_AJ_T0022339.1 MGP_AJ_G0016518.1 mouse_genomes_project 1 134580417 134626292 + MGP_AJ_P0022339 Cacna1s protein_coding protein_coding MGP_AJ_T0022340.1 MGP_AJ_G0016518.1 mouse_genomes_project 1 134612081 134618730 + Cacna1s protein_coding retained_intron MGP_AJ_T0022341.1 MGP_AJ_G0016518.1 mouse_genomes_project 1 134624018 134626292 + Cacna1s protein_coding processed_transcript MGP_AJ_T0018718.1 MGP_AJ_G0015792.1 mouse_genomes_project 1 1885096 1898098 - MGP_AJ_P0018718 protein_coding protein_coding MGP_AJ_T0018719.1 MGP_AJ_G0015792.1 mouse_genomes_project 1 1885101 1898127 - MGP_AJ_P0018719 protein_coding protein_coding MGP_AJ_T0018720.1 MGP_AJ_G0015792.1 mouse_genomes_project 1 1886326 1898086 - MGP_AJ_P0018720 protein_coding nonsense_mediated_decay MGP_AJ_T0018721.1 MGP_AJ_G0015792.1 mouse_genomes_project 1 1888267 1898127 - protein_coding processed_transcript MGP_AJ_T0018722.1 MGP_AJ_G0015792.1 mouse_genomes_project 1 1892166 1896864 - protein_coding retained_intron MGP_AJ_T0018723.1 MGP_AJ_G0015792.1 mouse_genomes_project 1 1893420 1898127 - MGP_AJ_P0018723 protein_coding protein_coding MGP_AJ_T0018724.1 MGP_AJ_G0015792.1 mouse_genomes_project 1 1895843 1898080 - protein_coding retained_intron MGP_AJ_T0002743.1 MGP_AJ_G0002615.1 mouse_genomes_project 1 2086211 2091644 + Gm16041 antisense antisense MGP_AJ_T0000466.1 MGP_AJ_G0000407.1 mouse_genomes_project 1 50424976 50426862 - TEC TEC MGP_AJ_T0099177.1 MGP_AJ_G0037143.1 mouse_genomes_project 1 70122484 70122675 + Gm25360 snRNA snRNA MGP_AJ_T0009489.1 MGP_AJ_G0007611.1 mouse_genomes_project 1 51221461 51221586 - Gm25240 miRNA miRNA MGP_AJ_T0100454.1 MGP_AJ_G0038420.1 mouse_genomes_project 1 107979541 107979671 - Gm22159 snoRNA snoRNA MGP_AJ_T0102186.1 MGP_AJ_G0039929.1 mouse_genomes_project 1 157677962 157679942 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0000507.1 MGP_AJ_G0000448.1 mouse_genomes_project 1 66522848 66524212 - TEC TEC MGP_AJ_T0002744.1 MGP_AJ_G0002616.1 mouse_genomes_project 1 3355276 3360707 - 4732440D04Rik antisense antisense MGP_AJ_T0002745.1 MGP_AJ_G0002616.1 mouse_genomes_project 1 3358706 3360004 - 4732440D04Rik antisense antisense MGP_AJ_T0002746.1 MGP_AJ_G0002616.1 mouse_genomes_project 1 3360025 3360706 - 4732440D04Rik antisense antisense MGP_AJ_T0012180.1 MGP_AJ_G0010275.1 mouse_genomes_project 1 106769087 106771556 - processed_pseudogene processed_pseudogene MGP_AJ_T0018703.1 MGP_AJ_G0015787.1 mouse_genomes_project 1 274602 285051 - Xkr4 protein_coding processed_transcript MGP_AJ_T0018704.1 MGP_AJ_G0015787.1 mouse_genomes_project 1 275224 284339 - Xkr4 protein_coding processed_transcript MGP_AJ_T0018705.1 MGP_AJ_G0015787.1 mouse_genomes_project 1 283188 769264 - MGP_AJ_P0018705 Xkr4 protein_coding protein_coding MGP_AJ_T0000583.1 MGP_AJ_G0000524.1 mouse_genomes_project 1 109269217 109272260 - TEC TEC MGP_AJ_T0012266.1 MGP_AJ_G0010361.1 mouse_genomes_project 1 143354865 143356009 + processed_pseudogene processed_pseudogene MGP_AJ_T0012296.1 MGP_AJ_G0010391.1 mouse_genomes_project 1 154353703 154353962 + processed_pseudogene processed_pseudogene MGP_AJ_T0011887.1 MGP_AJ_G0009982.1 mouse_genomes_project 1 9422742 9423615 + processed_pseudogene processed_pseudogene MGP_AJ_T0002962.1 MGP_AJ_G0002778.1 mouse_genomes_project 1 177173807 177179016 - B230369F24Rik antisense antisense MGP_AJ_T0020589.1 MGP_AJ_G0016154.1 mouse_genomes_project 1 73055359 73063424 - MGP_AJ_P0020589 Cnppd1 protein_coding protein_coding MGP_AJ_T0020590.1 MGP_AJ_G0016154.1 mouse_genomes_project 1 73056574 73062475 - MGP_AJ_P0020590 Cnppd1 protein_coding protein_coding MGP_AJ_T0020591.1 MGP_AJ_G0016154.1 mouse_genomes_project 1 73056577 73059659 - Cnppd1 protein_coding retained_intron MGP_AJ_T0020592.1 MGP_AJ_G0016154.1 mouse_genomes_project 1 73056577 73063483 - MGP_AJ_P0020592 Cnppd1 protein_coding protein_coding MGP_AJ_T0020593.1 MGP_AJ_G0016154.1 mouse_genomes_project 1 73057591 73058663 - Cnppd1 protein_coding retained_intron MGP_AJ_T0020594.1 MGP_AJ_G0016154.1 mouse_genomes_project 1 73057898 73058608 - Cnppd1 protein_coding retained_intron MGP_AJ_T0020595.1 MGP_AJ_G0016154.1 mouse_genomes_project 1 73060129 73062587 - MGP_AJ_P0020595 Cnppd1 protein_coding protein_coding MGP_AJ_T0020596.1 MGP_AJ_G0016154.1 mouse_genomes_project 1 73060379 73063497 - MGP_AJ_P0020596 Cnppd1 protein_coding protein_coding MGP_AJ_T0000743.1 MGP_AJ_G0000682.1 mouse_genomes_project 1 174802830 174804474 - TEC TEC MGP_AJ_T0021992.1 MGP_AJ_G0016446.1 mouse_genomes_project 1 130405038 130425061 + MGP_AJ_P0021992 Slc45a3 protein_coding protein_coding MGP_AJ_T0021993.1 MGP_AJ_G0016446.1 mouse_genomes_project 1 130412702 130425056 + MGP_AJ_P0021993 Slc45a3 protein_coding protein_coding MGP_AJ_T0021994.1 MGP_AJ_G0016446.1 mouse_genomes_project 1 130418810 130420037 + MGP_AJ_P0021994 Slc45a3 protein_coding protein_coding MGP_AJ_T0021995.1 MGP_AJ_G0016446.1 mouse_genomes_project 1 130421055 130423998 + Slc45a3 protein_coding processed_transcript MGP_AJ_T0018710.1 MGP_AJ_G0015791.1 mouse_genomes_project 1 1599027 1604518 - MGP_AJ_P0018710 Sox17 protein_coding protein_coding MGP_AJ_T0018711.1 MGP_AJ_G0015791.1 mouse_genomes_project 1 1599346 1604862 - MGP_AJ_P0018711 Sox17 protein_coding protein_coding MGP_AJ_T0018712.1 MGP_AJ_G0015791.1 mouse_genomes_project 1 1599486 1605459 - MGP_AJ_P0018712 Sox17 protein_coding protein_coding MGP_AJ_T0018713.1 MGP_AJ_G0015791.1 mouse_genomes_project 1 1599809 1604468 - MGP_AJ_P0018713 Sox17 protein_coding protein_coding MGP_AJ_T0018714.1 MGP_AJ_G0015791.1 mouse_genomes_project 1 1600553 1601701 - Sox17 protein_coding retained_intron MGP_AJ_T0018715.1 MGP_AJ_G0015791.1 mouse_genomes_project 1 1600554 1604435 - MGP_AJ_P0018715 Sox17 protein_coding protein_coding MGP_AJ_T0018716.1 MGP_AJ_G0015791.1 mouse_genomes_project 1 1600561 1601832 - MGP_AJ_P0018716 Sox17 protein_coding protein_coding MGP_AJ_T0018717.1 MGP_AJ_G0015791.1 mouse_genomes_project 1 1600563 1604501 - MGP_AJ_P0018717 Sox17 protein_coding protein_coding MGP_AJ_T0005732.1 MGP_AJ_G0004814.1 mouse_genomes_project 1 53743827 53784946 + 9130227L01Rik lincRNA lincRNA MGP_AJ_T0005733.1 MGP_AJ_G0004814.1 mouse_genomes_project 1 53773927 53785176 + 9130227L01Rik lincRNA lincRNA MGP_AJ_T0020829.1 MGP_AJ_G0016189.1 mouse_genomes_project 1 77655001 77710016 - MGP_AJ_P0020829 Wdfy1 protein_coding protein_coding MGP_AJ_T0020830.1 MGP_AJ_G0016189.1 mouse_genomes_project 1 77658088 77709985 - MGP_AJ_P0020830 Wdfy1 protein_coding nonsense_mediated_decay MGP_AJ_T0020831.1 MGP_AJ_G0016189.1 mouse_genomes_project 1 77669965 77724121 - MGP_AJ_P0020831 Wdfy1 protein_coding protein_coding MGP_AJ_T0020832.1 MGP_AJ_G0016189.1 mouse_genomes_project 1 77671688 77710016 - MGP_AJ_P0020832 Wdfy1 protein_coding protein_coding MGP_AJ_T0020833.1 MGP_AJ_G0016189.1 mouse_genomes_project 1 77671701 77710016 - MGP_AJ_P0020833 Wdfy1 protein_coding protein_coding MGP_AJ_T0020834.1 MGP_AJ_G0016189.1 mouse_genomes_project 1 77671890 77675630 - Wdfy1 protein_coding processed_transcript MGP_AJ_T0020835.1 MGP_AJ_G0016189.1 mouse_genomes_project 1 77679275 77709968 - Wdfy1 protein_coding retained_intron MGP_AJ_T0020836.1 MGP_AJ_G0016189.1 mouse_genomes_project 1 77679508 77710288 - MGP_AJ_P0020836 Wdfy1 protein_coding protein_coding MGP_AJ_T0000411.1 MGP_AJ_G0000353.1 mouse_genomes_project 1 23084967 23090401 - TEC TEC MGP_AJ_T0023289.1 MGP_AJ_G0016705.1 mouse_genomes_project 1 168639079 168672602 - MGP_AJ_P0023289 Uap1 protein_coding protein_coding MGP_AJ_T0023290.1 MGP_AJ_G0016705.1 mouse_genomes_project 1 168639142 168672591 - MGP_AJ_P0023290 Uap1 protein_coding protein_coding MGP_AJ_T0023291.1 MGP_AJ_G0016705.1 mouse_genomes_project 1 168639143 168672591 - MGP_AJ_P0023291 Uap1 protein_coding protein_coding MGP_AJ_T0023292.1 MGP_AJ_G0016705.1 mouse_genomes_project 1 168639174 168640857 - Uap1 protein_coding retained_intron MGP_AJ_T0023293.1 MGP_AJ_G0016705.1 mouse_genomes_project 1 168646754 168672437 - Uap1 protein_coding retained_intron MGP_AJ_T0023294.1 MGP_AJ_G0016705.1 mouse_genomes_project 1 168658337 168658913 - Uap1 protein_coding processed_transcript MGP_AJ_T0023295.1 MGP_AJ_G0016705.1 mouse_genomes_project 1 168658355 168672411 - Uap1 protein_coding processed_transcript MGP_AJ_T0023296.1 MGP_AJ_G0016705.1 mouse_genomes_project 1 168663290 168672434 - Uap1 protein_coding retained_intron MGP_AJ_T0023297.1 MGP_AJ_G0016705.1 mouse_genomes_project 1 168666149 168672531 - Uap1 protein_coding processed_transcript MGP_AJ_T0099214.1 MGP_AJ_G0037180.1 mouse_genomes_project 1 149466636 149466743 - Gm22756 snRNA snRNA MGP_AJ_T0005971.1 MGP_AJ_G0005002.1 mouse_genomes_project 1 163017139 163028711 + Gm26685 lincRNA lincRNA MGP_AJ_T0023586.1 MGP_AJ_G0016771.1 mouse_genomes_project 1 171141356 171149224 + MGP_AJ_P0023586 Vsig8 protein_coding protein_coding MGP_AJ_T0023587.1 MGP_AJ_G0016771.1 mouse_genomes_project 1 171145415 171149223 + MGP_AJ_P0023587 Vsig8 protein_coding protein_coding MGP_AJ_T0023380.1 MGP_AJ_G0016729.1 mouse_genomes_project 1 169816129 169816817 - Ndufs2 protein_coding retained_intron MGP_AJ_T0023381.1 MGP_AJ_G0016729.1 mouse_genomes_project 1 169816129 169828491 - Ndufs2 protein_coding retained_intron MGP_AJ_T0023382.1 MGP_AJ_G0016729.1 mouse_genomes_project 1 169816129 169818809 - Ndufs2 protein_coding processed_transcript MGP_AJ_T0023383.1 MGP_AJ_G0016729.1 mouse_genomes_project 1 169816129 169828491 - MGP_AJ_P0023383 Ndufs2 protein_coding protein_coding MGP_AJ_T0023384.1 MGP_AJ_G0016729.1 mouse_genomes_project 1 169816129 169828491 - MGP_AJ_P0023384 Ndufs2 protein_coding protein_coding MGP_AJ_T0023385.1 MGP_AJ_G0016729.1 mouse_genomes_project 1 169818425 169821346 - Ndufs2 protein_coding processed_transcript MGP_AJ_T0023386.1 MGP_AJ_G0016729.1 mouse_genomes_project 1 169819807 169832607 - MGP_AJ_P0023386 Ndufs2 protein_coding protein_coding MGP_AJ_T0023387.1 MGP_AJ_G0016729.1 mouse_genomes_project 1 169820025 169832744 - MGP_AJ_P0023387 Ndufs2 protein_coding protein_coding MGP_AJ_T0099196.1 MGP_AJ_G0037162.1 mouse_genomes_project 1 120901832 120901981 + Gm24547 snRNA snRNA MGP_AJ_T0018948.1 MGP_AJ_G0015828.1 mouse_genomes_project 1 12072304 12074949 - MGP_AJ_P0018948 Msc protein_coding protein_coding MGP_AJ_T0018949.1 MGP_AJ_G0015828.1 mouse_genomes_project 1 12072704 12074312 - MGP_AJ_P0018949 Msc protein_coding protein_coding MGP_AJ_T0018950.1 MGP_AJ_G0015828.1 mouse_genomes_project 1 12072893 12073624 - Msc protein_coding retained_intron MGP_AJ_T0018951.1 MGP_AJ_G0015828.1 mouse_genomes_project 1 12073725 12074951 - Msc protein_coding retained_intron MGP_AJ_T0022939.1 MGP_AJ_G0016628.1 mouse_genomes_project 1 159524830 159555537 - MGP_AJ_P0022939 Dars2 protein_coding protein_coding MGP_AJ_T0022940.1 MGP_AJ_G0016628.1 mouse_genomes_project 1 159525410 159555521 - Dars2 protein_coding retained_intron MGP_AJ_T0022941.1 MGP_AJ_G0016628.1 mouse_genomes_project 1 159525721 159531193 - Dars2 protein_coding processed_transcript MGP_AJ_T0022942.1 MGP_AJ_G0016628.1 mouse_genomes_project 1 159525727 159555535 - Dars2 protein_coding retained_intron MGP_AJ_T0022943.1 MGP_AJ_G0016628.1 mouse_genomes_project 1 159529231 159555486 - Dars2 protein_coding retained_intron MGP_AJ_T0022944.1 MGP_AJ_G0016628.1 mouse_genomes_project 1 159546812 159547843 - Dars2 protein_coding retained_intron MGP_AJ_T0022945.1 MGP_AJ_G0016628.1 mouse_genomes_project 1 159547171 159555509 - Dars2 protein_coding processed_transcript MGP_AJ_T0002822.1 MGP_AJ_G0002672.1 mouse_genomes_project 1 64229597 64236132 - Gm10558 antisense antisense MGP_AJ_T0098498.1 MGP_AJ_G0036482.1 mouse_genomes_project 1 24372170 24372289 - n-R5s209 rRNA rRNA MGP_AJ_T0102178.1 MGP_AJ_G0039921.1 mouse_genomes_project 1 105710097 105723695 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0005851.1 MGP_AJ_G0004908.1 mouse_genomes_project 1 94877625 94930346 - 4930533P14Rik lincRNA lincRNA MGP_AJ_T0011841.1 MGP_AJ_G0009936.1 mouse_genomes_project 1 330643 331123 + processed_pseudogene processed_pseudogene MGP_AJ_T0021110.1 MGP_AJ_G0016246.1 mouse_genomes_project 1 85502033 85507246 + MGP_AJ_P0021110 3110079O15Rik protein_coding protein_coding MGP_AJ_T0021111.1 MGP_AJ_G0016246.1 mouse_genomes_project 1 85504301 85507222 + 3110079O15Rik protein_coding processed_transcript MGP_AJ_T0005870.1 MGP_AJ_G0004922.1 mouse_genomes_project 1 111573673 111574740 + Gm28189 lincRNA lincRNA MGP_AJ_T0023911.1 MGP_AJ_G0016863.1 mouse_genomes_project 1 180082815 180122848 - MGP_AJ_P0023911 Wdr26 protein_coding protein_coding MGP_AJ_T0023912.1 MGP_AJ_G0016863.1 mouse_genomes_project 1 180082819 180122764 - MGP_AJ_P0023912 Wdr26 protein_coding protein_coding MGP_AJ_T0023913.1 MGP_AJ_G0016863.1 mouse_genomes_project 1 180086721 180122722 - MGP_AJ_P0023913 Wdr26 protein_coding nonsense_mediated_decay MGP_AJ_T0023914.1 MGP_AJ_G0016863.1 mouse_genomes_project 1 180087299 180094424 - MGP_AJ_P0023914 Wdr26 protein_coding nonsense_mediated_decay MGP_AJ_T0023915.1 MGP_AJ_G0016863.1 mouse_genomes_project 1 180090032 180093897 - MGP_AJ_P0023915 Wdr26 protein_coding protein_coding MGP_AJ_T0023916.1 MGP_AJ_G0016863.1 mouse_genomes_project 1 180091932 180094554 - Wdr26 protein_coding processed_transcript MGP_AJ_T0023917.1 MGP_AJ_G0016863.1 mouse_genomes_project 1 180097862 180102683 - Wdr26 protein_coding retained_intron MGP_AJ_T0023918.1 MGP_AJ_G0016863.1 mouse_genomes_project 1 180109432 180114480 - Wdr26 protein_coding retained_intron MGP_AJ_T0002834.1 MGP_AJ_G0002677.1 mouse_genomes_project 1 72760420 72762880 - Gm29539 antisense antisense MGP_AJ_T0005991.1 MGP_AJ_G0005018.1 mouse_genomes_project 1 168672824 168673965 + Gm37748 lincRNA lincRNA MGP_AJ_T0011877.1 MGP_AJ_G0009972.1 mouse_genomes_project 1 6800243 6802428 - processed_pseudogene processed_pseudogene MGP_AJ_T0012065.1 MGP_AJ_G0010160.1 mouse_genomes_project 1 59904181 59904459 - processed_pseudogene processed_pseudogene MGP_AJ_T0011944.1 MGP_AJ_G0010039.1 mouse_genomes_project 1 28817901 28818460 + processed_pseudogene processed_pseudogene MGP_AJ_T0012015.1 MGP_AJ_G0010110.1 mouse_genomes_project 1 46996953 46997948 + processed_pseudogene processed_pseudogene MGP_AJ_T0019660.1 MGP_AJ_G0015978.1 mouse_genomes_project 1 43477620 43506137 + MGP_AJ_P0019660 Wdr75 protein_coding protein_coding MGP_AJ_T0019661.1 MGP_AJ_G0015978.1 mouse_genomes_project 1 43477903 43506122 + Wdr75 protein_coding retained_intron MGP_AJ_T0019662.1 MGP_AJ_G0015978.1 mouse_genomes_project 1 43477957 43484784 + Wdr75 protein_coding retained_intron MGP_AJ_T0019663.1 MGP_AJ_G0015978.1 mouse_genomes_project 1 43477961 43486357 + MGP_AJ_P0019663 Wdr75 protein_coding protein_coding MGP_AJ_T0019664.1 MGP_AJ_G0015978.1 mouse_genomes_project 1 43484417 43506033 + Wdr75 protein_coding processed_transcript MGP_AJ_T0019665.1 MGP_AJ_G0015978.1 mouse_genomes_project 1 43486114 43487884 + Wdr75 protein_coding processed_transcript MGP_AJ_T0019666.1 MGP_AJ_G0015978.1 mouse_genomes_project 1 43497198 43506137 + Wdr75 protein_coding retained_intron MGP_AJ_T0019667.1 MGP_AJ_G0015978.1 mouse_genomes_project 1 43504786 43506031 + Wdr75 protein_coding retained_intron MGP_AJ_T0019668.1 MGP_AJ_G0015978.1 mouse_genomes_project 1 43505078 43506134 + MGP_AJ_P0019668 Wdr75 protein_coding protein_coding MGP_AJ_T0018971.1 MGP_AJ_G0015836.1 mouse_genomes_project 1 13547945 13849587 - MGP_AJ_P0018971 Stau2 protein_coding protein_coding MGP_AJ_T0018972.1 MGP_AJ_G0015836.1 mouse_genomes_project 1 13548072 13849509 - MGP_AJ_P0018972 Stau2 protein_coding protein_coding MGP_AJ_T0018973.1 MGP_AJ_G0015836.1 mouse_genomes_project 1 13548075 13849509 - MGP_AJ_P0018973 Stau2 protein_coding protein_coding MGP_AJ_T0018974.1 MGP_AJ_G0015836.1 mouse_genomes_project 1 13548081 13849587 - MGP_AJ_P0018974 Stau2 protein_coding protein_coding MGP_AJ_T0018975.1 MGP_AJ_G0015836.1 mouse_genomes_project 1 13548087 13850363 - MGP_AJ_P0018975 Stau2 protein_coding protein_coding MGP_AJ_T0018976.1 MGP_AJ_G0015836.1 mouse_genomes_project 1 13673459 13849475 - MGP_AJ_P0018976 Stau2 protein_coding protein_coding MGP_AJ_T0018977.1 MGP_AJ_G0015836.1 mouse_genomes_project 1 13673538 13849528 - MGP_AJ_P0018977 Stau2 protein_coding protein_coding MGP_AJ_T0018978.1 MGP_AJ_G0015836.1 mouse_genomes_project 1 13673623 13850318 - MGP_AJ_P0018978 Stau2 protein_coding protein_coding MGP_AJ_T0018979.1 MGP_AJ_G0015836.1 mouse_genomes_project 1 13674248 13705471 - Stau2 protein_coding processed_transcript MGP_AJ_T0018980.1 MGP_AJ_G0015836.1 mouse_genomes_project 1 13674341 13849521 - MGP_AJ_P0018980 Stau2 protein_coding protein_coding MGP_AJ_T0018981.1 MGP_AJ_G0015836.1 mouse_genomes_project 1 13674349 13849534 - MGP_AJ_P0018981 Stau2 protein_coding nonsense_mediated_decay MGP_AJ_T0018982.1 MGP_AJ_G0015836.1 mouse_genomes_project 1 13675644 13849588 - MGP_AJ_P0018982 Stau2 protein_coding protein_coding MGP_AJ_T0018983.1 MGP_AJ_G0015836.1 mouse_genomes_project 1 13725947 13849551 - MGP_AJ_P0018983 Stau2 protein_coding protein_coding MGP_AJ_T0018984.1 MGP_AJ_G0015836.1 mouse_genomes_project 1 13770979 13850331 - MGP_AJ_P0018984 Stau2 protein_coding protein_coding MGP_AJ_T0018985.1 MGP_AJ_G0015836.1 mouse_genomes_project 1 13790248 13849541 - MGP_AJ_P0018985 Stau2 protein_coding protein_coding MGP_AJ_T0018986.1 MGP_AJ_G0015836.1 mouse_genomes_project 1 13790637 13850272 - MGP_AJ_P0018986 Stau2 protein_coding protein_coding MGP_AJ_T0018987.1 MGP_AJ_G0015836.1 mouse_genomes_project 1 13790746 13850271 - MGP_AJ_P0018987 Stau2 protein_coding protein_coding MGP_AJ_T0000638.1 MGP_AJ_G0000578.1 mouse_genomes_project 1 134028530 134030776 - TEC TEC MGP_AJ_T0005685.1 MGP_AJ_G0004785.1 mouse_genomes_project 1 33925092 33925808 + 4930403P22Rik lincRNA lincRNA MGP_AJ_T0002985.1 MGP_AJ_G0002798.1 mouse_genomes_project 1 188758198 188762916 + Gm37422 antisense antisense MGP_AJ_T0002864.1 MGP_AJ_G0002704.1 mouse_genomes_project 1 103727380 103733001 + Gm17634 antisense antisense MGP_AJ_T0002865.1 MGP_AJ_G0002704.1 mouse_genomes_project 1 103728134 103733143 + Gm17634 antisense antisense MGP_AJ_T0002866.1 MGP_AJ_G0002704.1 mouse_genomes_project 1 103728520 103728884 + Gm17634 antisense antisense MGP_AJ_T0002819.1 MGP_AJ_G0002669.1 mouse_genomes_project 1 60365472 60406387 - Pard3bos3 antisense antisense MGP_AJ_T0022555.1 MGP_AJ_G0016561.1 mouse_genomes_project 1 149763663 149783629 + MGP_AJ_P0022555 Ivns1abp protein_coding protein_coding MGP_AJ_T0022556.1 MGP_AJ_G0016561.1 mouse_genomes_project 1 149763695 149776009 + MGP_AJ_P0022556 Ivns1abp protein_coding protein_coding MGP_AJ_T0022557.1 MGP_AJ_G0016561.1 mouse_genomes_project 1 149763704 149783622 + MGP_AJ_P0022557 Ivns1abp protein_coding protein_coding MGP_AJ_T0022558.1 MGP_AJ_G0016561.1 mouse_genomes_project 1 149763770 149782572 + MGP_AJ_P0022558 Ivns1abp protein_coding nonsense_mediated_decay MGP_AJ_T0022559.1 MGP_AJ_G0016561.1 mouse_genomes_project 1 149780453 149781241 + MGP_AJ_P0022559 Ivns1abp protein_coding protein_coding MGP_AJ_T0021211.1 MGP_AJ_G0016272.1 mouse_genomes_project 1 88126226 88129438 - MGP_AJ_P0021211 Gbx2 protein_coding protein_coding MGP_AJ_T0021212.1 MGP_AJ_G0016272.1 mouse_genomes_project 1 88126236 88127456 - Gbx2 protein_coding retained_intron MGP_AJ_T0020217.1 MGP_AJ_G0016076.1 mouse_genomes_project 1 61674975 61692630 - MGP_AJ_P0020217 4933402D24Rik protein_coding protein_coding MGP_AJ_T0005775.1 MGP_AJ_G0004846.1 mouse_genomes_project 1 69784978 69807909 - Gm28818 lincRNA lincRNA MGP_AJ_T0005776.1 MGP_AJ_G0004846.1 mouse_genomes_project 1 69787449 69789633 - Gm28818 lincRNA lincRNA MGP_AJ_T0000425.1 MGP_AJ_G0000367.1 mouse_genomes_project 1 30052782 30054327 + TEC TEC MGP_AJ_T0101682.1 MGP_AJ_G0039643.1 mouse_genomes_project 1 155309880 155312354 - transcribed_processed_pseudogene processed_transcript MGP_AJ_T0101683.1 MGP_AJ_G0039643.1 mouse_genomes_project 1 155310181 155310492 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0012342.1 MGP_AJ_G0010437.1 mouse_genomes_project 1 176044954 176045271 + processed_pseudogene processed_pseudogene MGP_AJ_T0002828.1 MGP_AJ_G0002675.1 mouse_genomes_project 1 70953320 70993027 + 1700027A15Rik antisense antisense MGP_AJ_T0002829.1 MGP_AJ_G0002675.1 mouse_genomes_project 1 70984626 70993810 + 1700027A15Rik antisense antisense MGP_AJ_T0002830.1 MGP_AJ_G0002675.1 mouse_genomes_project 1 70984971 70993801 + 1700027A15Rik antisense antisense MGP_AJ_T0002831.1 MGP_AJ_G0002675.1 mouse_genomes_project 1 70990856 70993802 + 1700027A15Rik antisense antisense MGP_AJ_T0002832.1 MGP_AJ_G0002675.1 mouse_genomes_project 1 70992871 70993810 + 1700027A15Rik antisense antisense MGP_AJ_T0019669.1 MGP_AJ_G0015979.1 mouse_genomes_project 1 43572220 43572969 - Gm5269 protein_coding translated_processed_pseudogene MGP_AJ_T0019670.1 MGP_AJ_G0015979.1 mouse_genomes_project 1 43572636 43572774 - MGP_AJ_P0019670 Gm5269 protein_coding protein_coding MGP_AJ_T0000438.1 MGP_AJ_G0000379.1 mouse_genomes_project 1 31839070 31841295 + TEC TEC MGP_AJ_T0023971.1 MGP_AJ_G0016875.1 mouse_genomes_project 1 181490268 181532444 + Capn8 protein_coding processed_transcript MGP_AJ_T0023972.1 MGP_AJ_G0016875.1 mouse_genomes_project 1 181490273 181558799 + MGP_AJ_P0023972 Capn8 protein_coding protein_coding MGP_AJ_T0023973.1 MGP_AJ_G0016875.1 mouse_genomes_project 1 181490299 181558687 + MGP_AJ_P0023973 Capn8 protein_coding nonsense_mediated_decay MGP_AJ_T0023974.1 MGP_AJ_G0016875.1 mouse_genomes_project 1 181490322 181558554 + MGP_AJ_P0023974 Capn8 protein_coding unknown_likely_coding MGP_AJ_T0021204.1 MGP_AJ_G0016270.1 mouse_genomes_project 1 87269154 87348105 + MGP_AJ_P0021204 Sh3bp4 protein_coding protein_coding MGP_AJ_T0021205.1 MGP_AJ_G0016270.1 mouse_genomes_project 1 87269192 87305993 + Sh3bp4 protein_coding processed_transcript MGP_AJ_T0019529.1 MGP_AJ_G0015950.1 mouse_genomes_project 1 38005493 38010325 + protein_coding retained_intron MGP_AJ_T0019530.1 MGP_AJ_G0015950.1 mouse_genomes_project 1 38006494 38010055 + MGP_AJ_P0019530 protein_coding protein_coding MGP_AJ_T0019531.1 MGP_AJ_G0015950.1 mouse_genomes_project 1 38006781 38051293 + MGP_AJ_P0019531 protein_coding unknown_likely_coding MGP_AJ_T0099197.1 MGP_AJ_G0037163.1 mouse_genomes_project 1 122876994 122877098 + Gm25578 snRNA snRNA MGP_AJ_T0000781.1 MGP_AJ_G0000718.1 mouse_genomes_project 1 185232845 185233956 + TEC TEC MGP_AJ_T0011894.1 MGP_AJ_G0009989.1 mouse_genomes_project 1 13379238 13379791 + processed_pseudogene processed_pseudogene MGP_AJ_T0002963.1 MGP_AJ_G0002779.1 mouse_genomes_project 1 177181548 177184613 - antisense antisense MGP_AJ_T0005836.1 MGP_AJ_G0004894.1 mouse_genomes_project 1 89490091 89497432 - Gm26683 lincRNA lincRNA MGP_AJ_T0012343.1 MGP_AJ_G0010438.1 mouse_genomes_project 1 176560154 176560764 + processed_pseudogene processed_pseudogene MGP_AJ_T0011912.1 MGP_AJ_G0010007.1 mouse_genomes_project 1 18769712 18807071 + processed_pseudogene processed_pseudogene MGP_AJ_T0023709.1 MGP_AJ_G0016823.1 mouse_genomes_project 1 174748354 174749692 - MGP_AJ_P0023709 protein_coding protein_coding MGP_AJ_T0023986.1 MGP_AJ_G0016879.1 mouse_genomes_project 1 181971645 182108150 - MGP_AJ_P0023986 Disp1 protein_coding protein_coding MGP_AJ_T0023987.1 MGP_AJ_G0016879.1 mouse_genomes_project 1 181971645 182033216 - MGP_AJ_P0023987 Disp1 protein_coding protein_coding MGP_AJ_T0023988.1 MGP_AJ_G0016879.1 mouse_genomes_project 1 181971645 182108145 - MGP_AJ_P0023988 Disp1 protein_coding protein_coding MGP_AJ_T0023989.1 MGP_AJ_G0016879.1 mouse_genomes_project 1 181981602 182033286 - Disp1 protein_coding retained_intron MGP_AJ_T0023990.1 MGP_AJ_G0016879.1 mouse_genomes_project 1 182021195 182108182 - MGP_AJ_P0023990 Disp1 protein_coding protein_coding MGP_AJ_T0005715.1 MGP_AJ_G0004800.1 mouse_genomes_project 1 41443977 41444589 + Gm29157 lincRNA lincRNA MGP_AJ_T0000641.1 MGP_AJ_G0000581.1 mouse_genomes_project 1 135772687 135774601 + TEC TEC MGP_AJ_T0021597.1 MGP_AJ_G0016355.1 mouse_genomes_project 1 104900659 105077758 - MGP_AJ_P0021597 Bcl2 protein_coding protein_coding MGP_AJ_T0021598.1 MGP_AJ_G0016355.1 mouse_genomes_project 1 105073833 105076663 - MGP_AJ_P0021598 Bcl2 protein_coding protein_coding MGP_AJ_T0023558.1 MGP_AJ_G0016766.1 mouse_genomes_project 1 170944147 170951705 + MGP_AJ_P0023558 Pigm protein_coding protein_coding MGP_AJ_T0006054.1 MGP_AJ_G0005067.1 mouse_genomes_project 1 190040285 190041643 + Gm38161 lincRNA lincRNA MGP_AJ_T0022089.1 MGP_AJ_G0016464.1 mouse_genomes_project 1 131702366 131761245 + MGP_AJ_P0022089 Plekha6 protein_coding protein_coding MGP_AJ_T0022090.1 MGP_AJ_G0016464.1 mouse_genomes_project 1 131713470 131756845 + MGP_AJ_P0022090 Plekha6 protein_coding protein_coding MGP_AJ_T0022091.1 MGP_AJ_G0016464.1 mouse_genomes_project 1 131715473 131759026 + MGP_AJ_P0022091 Plekha6 protein_coding protein_coding MGP_AJ_T0022092.1 MGP_AJ_G0016464.1 mouse_genomes_project 1 131725888 131728767 + Plekha6 protein_coding processed_transcript MGP_AJ_T0022093.1 MGP_AJ_G0016464.1 mouse_genomes_project 1 131730680 131738244 + MGP_AJ_P0022093 Plekha6 protein_coding protein_coding MGP_AJ_T0022094.1 MGP_AJ_G0016464.1 mouse_genomes_project 1 131730686 131741388 + MGP_AJ_P0022094 Plekha6 protein_coding protein_coding MGP_AJ_T0022095.1 MGP_AJ_G0016464.1 mouse_genomes_project 1 131749559 131752036 + Plekha6 protein_coding retained_intron MGP_AJ_T0022096.1 MGP_AJ_G0016464.1 mouse_genomes_project 1 131755760 131759427 + Plekha6 protein_coding retained_intron MGP_AJ_T0000712.1 MGP_AJ_G0000651.1 mouse_genomes_project 1 159209859 159210286 - TEC TEC MGP_AJ_T0002863.1 MGP_AJ_G0002703.1 mouse_genomes_project 1 103288475 103289374 - Gm15699 antisense antisense MGP_AJ_T0002766.1 MGP_AJ_G0002627.1 mouse_genomes_project 1 16461784 16503349 - Gm15825 antisense antisense MGP_AJ_T0099118.1 MGP_AJ_G0037088.1 mouse_genomes_project 1 103753664 103778183 - sense_overlapping sense_overlapping MGP_AJ_T0012090.1 MGP_AJ_G0010185.1 mouse_genomes_project 1 65508556 65510540 + processed_pseudogene processed_pseudogene MGP_AJ_T0002785.1 MGP_AJ_G0002643.1 mouse_genomes_project 1 35970011 35974040 + Gm16151 antisense antisense MGP_AJ_T0102164.1 MGP_AJ_G0039907.1 mouse_genomes_project 1 86298998 86299856 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0021186.1 MGP_AJ_G0016263.1 mouse_genomes_project 1 86324429 86329787 + MGP_AJ_P0021186 protein_coding unknown_likely_coding MGP_AJ_T0019888.1 MGP_AJ_G0016022.1 mouse_genomes_project 1 55200311 55208019 + MGP_AJ_P0019888 1700066M21Rik protein_coding protein_coding MGP_AJ_T0019889.1 MGP_AJ_G0016022.1 mouse_genomes_project 1 55200324 55202854 + 1700066M21Rik protein_coding processed_transcript MGP_AJ_T0019890.1 MGP_AJ_G0016022.1 mouse_genomes_project 1 55200331 55202770 + 1700066M21Rik protein_coding processed_transcript MGP_AJ_T0011846.1 MGP_AJ_G0009941.1 mouse_genomes_project 1 1717772 1718708 + processed_pseudogene processed_pseudogene MGP_AJ_T0023175.1 MGP_AJ_G0016678.1 mouse_genomes_project 1 164276569 164287318 + MGP_AJ_P0023175 Creg1 protein_coding nonsense_mediated_decay MGP_AJ_T0023176.1 MGP_AJ_G0016678.1 mouse_genomes_project 1 164276569 164287318 + MGP_AJ_P0023176 Creg1 protein_coding protein_coding MGP_AJ_T0023177.1 MGP_AJ_G0016678.1 mouse_genomes_project 1 164281519 164285928 + MGP_AJ_P0023177 Creg1 protein_coding protein_coding MGP_AJ_T0020151.1 MGP_AJ_G0016065.1 mouse_genomes_project 1 59563895 60001624 + Pard3b protein_coding processed_transcript MGP_AJ_T0020152.1 MGP_AJ_G0016065.1 mouse_genomes_project 1 59563895 60544665 + MGP_AJ_P0020152 Pard3b protein_coding protein_coding MGP_AJ_T0020153.1 MGP_AJ_G0016065.1 mouse_genomes_project 1 59563946 59692195 + Pard3b protein_coding retained_intron MGP_AJ_T0020154.1 MGP_AJ_G0016065.1 mouse_genomes_project 1 59563957 60093024 + Pard3b protein_coding retained_intron MGP_AJ_T0020155.1 MGP_AJ_G0016065.1 mouse_genomes_project 1 59564314 60540328 + MGP_AJ_P0020155 Pard3b protein_coding protein_coding MGP_AJ_T0020156.1 MGP_AJ_G0016065.1 mouse_genomes_project 1 59564314 60544665 + MGP_AJ_P0020156 Pard3b protein_coding protein_coding MGP_AJ_T0012339.1 MGP_AJ_G0010434.1 mouse_genomes_project 1 175409761 175410410 - processed_pseudogene processed_pseudogene MGP_AJ_T0000787.1 MGP_AJ_G0000724.1 mouse_genomes_project 1 187028862 187031299 + TEC TEC MGP_AJ_T0000688.1 MGP_AJ_G0000627.1 mouse_genomes_project 1 154522453 154527801 - TEC TEC MGP_AJ_T0012016.1 MGP_AJ_G0010111.1 mouse_genomes_project 1 47151355 47153061 - processed_pseudogene processed_pseudogene MGP_AJ_T0002770.1 MGP_AJ_G0002631.1 mouse_genomes_project 1 28659428 28673494 + Gm29128 antisense antisense MGP_AJ_T0099149.1 MGP_AJ_G0037115.1 mouse_genomes_project 1 9679719 9679826 + Gm22633 snRNA snRNA MGP_AJ_T0002913.1 MGP_AJ_G0002738.1 mouse_genomes_project 1 150306617 150318583 + Gm28610 antisense antisense MGP_AJ_T0002885.1 MGP_AJ_G0002718.1 mouse_genomes_project 1 130824736 130826119 + Gm15849 antisense antisense MGP_AJ_T0022799.1 MGP_AJ_G0016606.1 mouse_genomes_project 1 155028904 155097544 + MGP_AJ_P0022799 Abl2 protein_coding protein_coding MGP_AJ_T0022800.1 MGP_AJ_G0016606.1 mouse_genomes_project 1 155029105 155123980 + MGP_AJ_P0022800 Abl2 protein_coding protein_coding MGP_AJ_T0022801.1 MGP_AJ_G0016606.1 mouse_genomes_project 1 155029167 155117134 + MGP_AJ_P0022801 Abl2 protein_coding protein_coding MGP_AJ_T0022802.1 MGP_AJ_G0016606.1 mouse_genomes_project 1 155087961 155103141 + MGP_AJ_P0022802 Abl2 protein_coding protein_coding MGP_AJ_T0098884.1 MGP_AJ_G0036867.1 mouse_genomes_project 1 158803942 158809109 - Gm37529 sense_intronic sense_intronic MGP_AJ_T0009546.1 MGP_AJ_G0007668.1 mouse_genomes_project 1 160728566 160728676 + Mir214 miRNA miRNA MGP_AJ_T0019237.1 MGP_AJ_G0015895.1 mouse_genomes_project 1 32140001 32148654 + MGP_AJ_P0019237 Cfc1 protein_coding protein_coding MGP_AJ_T0006007.1 MGP_AJ_G0005033.1 mouse_genomes_project 1 179961835 179964245 + Gm37406 lincRNA lincRNA MGP_AJ_T0022685.1 MGP_AJ_G0016586.1 mouse_genomes_project 1 152332935 152336297 + MGP_AJ_P0022685 Teddm1b protein_coding protein_coding MGP_AJ_T0012107.1 MGP_AJ_G0010202.1 mouse_genomes_project 1 74037929 74038329 - processed_pseudogene processed_pseudogene MGP_AJ_T0012055.1 MGP_AJ_G0010150.1 mouse_genomes_project 1 58623170 58624236 + processed_pseudogene processed_pseudogene MGP_AJ_T0002897.1 MGP_AJ_G0002726.1 mouse_genomes_project 1 133745079 133762866 + Gm26642 antisense antisense MGP_AJ_T0099179.1 MGP_AJ_G0037145.1 mouse_genomes_project 1 70139770 70139961 + Gm24497 snRNA snRNA MGP_AJ_T0023500.1 MGP_AJ_G0016755.1 mouse_genomes_project 1 170633033 170649877 - MGP_AJ_P0023500 Ncstn protein_coding nonsense_mediated_decay MGP_AJ_T0023501.1 MGP_AJ_G0016755.1 mouse_genomes_project 1 170633033 170649877 - MGP_AJ_P0023501 Ncstn protein_coding protein_coding MGP_AJ_T0023502.1 MGP_AJ_G0016755.1 mouse_genomes_project 1 170633033 170649877 - MGP_AJ_P0023502 Ncstn protein_coding nonsense_mediated_decay MGP_AJ_T0023503.1 MGP_AJ_G0016755.1 mouse_genomes_project 1 170633722 170635087 - Ncstn protein_coding retained_intron MGP_AJ_T0023504.1 MGP_AJ_G0016755.1 mouse_genomes_project 1 170634892 170638288 - Ncstn protein_coding retained_intron MGP_AJ_T0023505.1 MGP_AJ_G0016755.1 mouse_genomes_project 1 170647819 170649877 - Ncstn protein_coding retained_intron MGP_AJ_T0102188.1 MGP_AJ_G0039931.1 mouse_genomes_project 1 168353886 168354090 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0023646.1 MGP_AJ_G0016801.1 mouse_genomes_project 1 172824025 172829760 + MGP_AJ_P0023646 Olfr429 protein_coding protein_coding MGP_AJ_T0023647.1 MGP_AJ_G0016801.1 mouse_genomes_project 1 172828817 172829760 + MGP_AJ_P0023647 Olfr429 protein_coding protein_coding MGP_AJ_T0011787.1 MGP_AJ_G0009909.1 mouse_genomes_project 1 105959184 105977413 + polymorphic_pseudogene processed_transcript MGP_AJ_T0000711.1 MGP_AJ_G0000650.1 mouse_genomes_project 1 159124817 159127097 - TEC TEC MGP_AJ_T0019827.1 MGP_AJ_G0016010.1 mouse_genomes_project 1 52448440 52451714 - Ankrd44 protein_coding retained_intron MGP_AJ_T0019828.1 MGP_AJ_G0016010.1 mouse_genomes_project 1 52448440 52729646 - MGP_AJ_P0019828 Ankrd44 protein_coding protein_coding MGP_AJ_T0019829.1 MGP_AJ_G0016010.1 mouse_genomes_project 1 52448442 52729646 - MGP_AJ_P0019829 Ankrd44 protein_coding protein_coding MGP_AJ_T0019830.1 MGP_AJ_G0016010.1 mouse_genomes_project 1 52452197 52460796 - MGP_AJ_P0019830 Ankrd44 protein_coding protein_coding MGP_AJ_T0019831.1 MGP_AJ_G0016010.1 mouse_genomes_project 1 52454769 52566473 - MGP_AJ_P0019831 Ankrd44 protein_coding protein_coding MGP_AJ_T0019832.1 MGP_AJ_G0016010.1 mouse_genomes_project 1 52457999 52494006 - Ankrd44 protein_coding retained_intron MGP_AJ_T0019833.1 MGP_AJ_G0016010.1 mouse_genomes_project 1 52470301 52525173 - Ankrd44 protein_coding retained_intron MGP_AJ_T0019834.1 MGP_AJ_G0016010.1 mouse_genomes_project 1 52524664 52526520 - Ankrd44 protein_coding retained_intron MGP_AJ_T0019835.1 MGP_AJ_G0016010.1 mouse_genomes_project 1 52531177 52537831 - Ankrd44 protein_coding retained_intron MGP_AJ_T0019836.1 MGP_AJ_G0016010.1 mouse_genomes_project 1 52537488 52729613 - Ankrd44 protein_coding retained_intron MGP_AJ_T0019837.1 MGP_AJ_G0016010.1 mouse_genomes_project 1 52545485 52569168 - Ankrd44 protein_coding retained_intron MGP_AJ_T0019838.1 MGP_AJ_G0016010.1 mouse_genomes_project 1 52563315 52571531 - Ankrd44 protein_coding processed_transcript MGP_AJ_T0019839.1 MGP_AJ_G0016010.1 mouse_genomes_project 1 52563633 52729646 - Ankrd44 protein_coding retained_intron MGP_AJ_T0019840.1 MGP_AJ_G0016010.1 mouse_genomes_project 1 52565114 52619830 - Ankrd44 protein_coding processed_transcript MGP_AJ_T0019841.1 MGP_AJ_G0016010.1 mouse_genomes_project 1 52569536 52690876 - MGP_AJ_P0019841 Ankrd44 protein_coding protein_coding MGP_AJ_T0006065.1 MGP_AJ_G0005076.1 mouse_genomes_project 1 193867071 193873356 - Gm32250 lincRNA lincRNA MGP_AJ_T0019628.1 MGP_AJ_G0015972.1 mouse_genomes_project 1 41820097 41827706 + MGP_AJ_P0019628 Bivm protein_coding protein_coding MGP_AJ_T0019629.1 MGP_AJ_G0015972.1 mouse_genomes_project 1 41820140 41827469 + Bivm protein_coding processed_transcript MGP_AJ_T0019630.1 MGP_AJ_G0015972.1 mouse_genomes_project 1 41820302 41845591 + MGP_AJ_P0019630 Bivm protein_coding protein_coding MGP_AJ_T0019631.1 MGP_AJ_G0015972.1 mouse_genomes_project 1 41820648 41827487 + Bivm protein_coding processed_transcript MGP_AJ_T0019632.1 MGP_AJ_G0015972.1 mouse_genomes_project 1 41821105 41845851 + MGP_AJ_P0019632 Bivm protein_coding protein_coding MGP_AJ_T0019633.1 MGP_AJ_G0015972.1 mouse_genomes_project 1 41821116 41827547 + MGP_AJ_P0019633 Bivm protein_coding protein_coding MGP_AJ_T0098500.1 MGP_AJ_G0036484.1 mouse_genomes_project 1 34610610 34610729 + n-R5s210 rRNA rRNA MGP_AJ_T0012128.1 MGP_AJ_G0010223.1 mouse_genomes_project 1 82131939 82132485 + processed_pseudogene processed_pseudogene MGP_AJ_T0012014.1 MGP_AJ_G0010109.1 mouse_genomes_project 1 46933428 46933643 - processed_pseudogene processed_pseudogene MGP_AJ_T0098867.1 MGP_AJ_G0036851.1 mouse_genomes_project 1 66990332 67005190 - Gm16076 sense_intronic sense_intronic MGP_AJ_T0000496.1 MGP_AJ_G0000437.1 mouse_genomes_project 1 62631036 62635403 + TEC TEC MGP_AJ_T0000805.1 MGP_AJ_G0000741.1 mouse_genomes_project 1 193871269 193874206 + TEC TEC MGP_AJ_T0021820.1 MGP_AJ_G0016405.1 mouse_genomes_project 1 126112274 126131709 + Ccnt2 protein_coding retained_intron MGP_AJ_T0021821.1 MGP_AJ_G0016405.1 mouse_genomes_project 1 126112274 126133920 + Ccnt2 protein_coding retained_intron MGP_AJ_T0021822.1 MGP_AJ_G0016405.1 mouse_genomes_project 1 126112274 126133920 + Ccnt2 protein_coding retained_intron MGP_AJ_T0021823.1 MGP_AJ_G0016405.1 mouse_genomes_project 1 126112274 126136523 + Ccnt2 protein_coding retained_intron MGP_AJ_T0021824.1 MGP_AJ_G0016405.1 mouse_genomes_project 1 126112274 126146392 + MGP_AJ_P0021824 Ccnt2 protein_coding protein_coding MGP_AJ_T0021825.1 MGP_AJ_G0016405.1 mouse_genomes_project 1 126112274 126144263 + MGP_AJ_P0021825 Ccnt2 protein_coding protein_coding MGP_AJ_T0021826.1 MGP_AJ_G0016405.1 mouse_genomes_project 1 126134688 126146392 + Ccnt2 protein_coding processed_transcript MGP_AJ_T0024269.1 MGP_AJ_G0016936.1 mouse_genomes_project 1 191939144 191962712 - MGP_AJ_P0024269 Diexf protein_coding protein_coding MGP_AJ_T0024270.1 MGP_AJ_G0016936.1 mouse_genomes_project 1 191940606 191965594 - MGP_AJ_P0024270 Diexf protein_coding protein_coding MGP_AJ_T0024271.1 MGP_AJ_G0016936.1 mouse_genomes_project 1 191952439 191979965 - MGP_AJ_P0024271 Diexf protein_coding protein_coding MGP_AJ_T0024272.1 MGP_AJ_G0016936.1 mouse_genomes_project 1 191952455 191979937 - MGP_AJ_P0024272 Diexf protein_coding nonsense_mediated_decay MGP_AJ_T0024273.1 MGP_AJ_G0016936.1 mouse_genomes_project 1 191955790 191963415 - Diexf protein_coding retained_intron MGP_AJ_T0024274.1 MGP_AJ_G0016936.1 mouse_genomes_project 1 191968514 191970508 - Diexf protein_coding retained_intron MGP_AJ_T0024275.1 MGP_AJ_G0016936.1 mouse_genomes_project 1 191968679 191978031 - Diexf protein_coding processed_transcript MGP_AJ_T0024276.1 MGP_AJ_G0016936.1 mouse_genomes_project 1 191970078 191979900 - MGP_AJ_P0024276 Diexf protein_coding nonsense_mediated_decay MGP_AJ_T0024277.1 MGP_AJ_G0016936.1 mouse_genomes_project 1 191970096 191971845 - Diexf protein_coding processed_transcript MGP_AJ_T0005671.1 MGP_AJ_G0004773.1 mouse_genomes_project 1 28564708 28566992 + Gm28644 lincRNA lincRNA MGP_AJ_T0022740.1 MGP_AJ_G0016597.1 mouse_genomes_project 1 154274250 154277645 - Qsox1 protein_coding retained_intron MGP_AJ_T0022741.1 MGP_AJ_G0016597.1 mouse_genomes_project 1 154276379 154311198 - MGP_AJ_P0022741 Qsox1 protein_coding protein_coding MGP_AJ_T0022742.1 MGP_AJ_G0016597.1 mouse_genomes_project 1 154276380 154311160 - MGP_AJ_P0022742 Qsox1 protein_coding protein_coding MGP_AJ_T0022743.1 MGP_AJ_G0016597.1 mouse_genomes_project 1 154276383 154311153 - MGP_AJ_P0022743 Qsox1 protein_coding protein_coding MGP_AJ_T0022744.1 MGP_AJ_G0016597.1 mouse_genomes_project 1 154278140 154280216 - Qsox1 protein_coding processed_transcript MGP_AJ_T0022745.1 MGP_AJ_G0016597.1 mouse_genomes_project 1 154292375 154311129 - Qsox1 protein_coding retained_intron MGP_AJ_T0022746.1 MGP_AJ_G0016597.1 mouse_genomes_project 1 154292549 154293624 - Qsox1 protein_coding retained_intron MGP_AJ_T0022747.1 MGP_AJ_G0016597.1 mouse_genomes_project 1 154299677 154311147 - Qsox1 protein_coding retained_intron MGP_AJ_T0012367.1 MGP_AJ_G0010462.1 mouse_genomes_project 1 188558378 188558519 + processed_pseudogene processed_pseudogene MGP_AJ_T0018953.1 MGP_AJ_G0015830.1 mouse_genomes_project 1 12614241 13056959 + MGP_AJ_P0018953 Kcnb2 protein_coding protein_coding MGP_AJ_T0018954.1 MGP_AJ_G0015830.1 mouse_genomes_project 1 12640013 13068165 + MGP_AJ_P0018954 Kcnb2 protein_coding protein_coding MGP_AJ_T0000706.1 MGP_AJ_G0000645.1 mouse_genomes_project 1 158797462 158798618 - TEC TEC MGP_AJ_T0000678.1 MGP_AJ_G0000617.1 mouse_genomes_project 1 149925160 149928189 - TEC TEC MGP_AJ_T0012325.1 MGP_AJ_G0010420.1 mouse_genomes_project 1 165312028 165312340 - processed_pseudogene processed_pseudogene MGP_AJ_T0002958.1 MGP_AJ_G0002775.1 mouse_genomes_project 1 175526567 175530926 + Gm36992 antisense antisense MGP_AJ_T0012260.1 MGP_AJ_G0010355.1 mouse_genomes_project 1 140950027 140950642 - processed_pseudogene processed_pseudogene MGP_AJ_T0000714.1 MGP_AJ_G0000653.1 mouse_genomes_project 1 159393563 159395322 + TEC TEC MGP_AJ_T0009472.1 MGP_AJ_G0007594.1 mouse_genomes_project 1 18082471 18082590 + Mir133b miRNA miRNA MGP_AJ_T0005675.1 MGP_AJ_G0004777.1 mouse_genomes_project 1 32080435 32088880 - 4930568A12Rik lincRNA lincRNA MGP_AJ_T0005676.1 MGP_AJ_G0004777.1 mouse_genomes_project 1 32084250 32089202 - 4930568A12Rik lincRNA lincRNA MGP_AJ_T0019085.1 MGP_AJ_G0015865.1 mouse_genomes_project 1 20758652 20775397 - MGP_AJ_P0019085 Ogfrl1 protein_coding protein_coding MGP_AJ_T0019086.1 MGP_AJ_G0015865.1 mouse_genomes_project 1 20761934 20772993 - Ogfrl1 protein_coding retained_intron MGP_AJ_T0019087.1 MGP_AJ_G0015865.1 mouse_genomes_project 1 20762466 20792676 - MGP_AJ_P0019087 Ogfrl1 protein_coding protein_coding MGP_AJ_T0019088.1 MGP_AJ_G0015865.1 mouse_genomes_project 1 20784984 20792907 - Ogfrl1 protein_coding processed_transcript MGP_AJ_T0100411.1 MGP_AJ_G0038377.1 mouse_genomes_project 1 20649032 20649153 + Gm24176 snoRNA snoRNA MGP_AJ_T0098874.1 MGP_AJ_G0036857.1 mouse_genomes_project 1 90020932 90022403 + Gm29101 sense_intronic sense_intronic MGP_AJ_T0000665.1 MGP_AJ_G0000604.1 mouse_genomes_project 1 141237709 141237843 + TEC TEC MGP_AJ_T0005924.1 MGP_AJ_G0004966.1 mouse_genomes_project 1 136441956 136482875 - Gm26936 lincRNA lincRNA MGP_AJ_T0005925.1 MGP_AJ_G0004966.1 mouse_genomes_project 1 136477789 136482850 - Gm26936 lincRNA lincRNA MGP_AJ_T0012356.1 MGP_AJ_G0010451.1 mouse_genomes_project 1 182207886 182208801 + processed_pseudogene processed_pseudogene MGP_AJ_T0019807.1 MGP_AJ_G0016005.1 mouse_genomes_project 1 51558229 51587782 - MGP_AJ_P0019807 Stk17b protein_coding protein_coding MGP_AJ_T0019808.1 MGP_AJ_G0016005.1 mouse_genomes_project 1 51563292 51565413 - Stk17b protein_coding retained_intron MGP_AJ_T0000509.1 MGP_AJ_G0000450.1 mouse_genomes_project 1 66648236 66651495 - TEC TEC MGP_AJ_T0012265.1 MGP_AJ_G0010360.1 mouse_genomes_project 1 142746550 142746955 - processed_pseudogene processed_pseudogene MGP_AJ_T0002975.1 MGP_AJ_G0002789.1 mouse_genomes_project 1 184306771 184319087 - 9630028B13Rik antisense antisense MGP_AJ_T0021152.1 MGP_AJ_G0016252.1 mouse_genomes_project 1 85889797 85980556 + MGP_AJ_P0021152 Dgkd protein_coding protein_coding MGP_AJ_T0021153.1 MGP_AJ_G0016252.1 mouse_genomes_project 1 85918596 85951607 + Dgkd protein_coding retained_intron MGP_AJ_T0021154.1 MGP_AJ_G0016252.1 mouse_genomes_project 1 85953766 85957840 + Dgkd protein_coding retained_intron MGP_AJ_T0021155.1 MGP_AJ_G0016252.1 mouse_genomes_project 1 85967814 85974319 + MGP_AJ_P0021155 Dgkd protein_coding protein_coding MGP_AJ_T0021156.1 MGP_AJ_G0016252.1 mouse_genomes_project 1 85970462 85981246 + MGP_AJ_P0021156 Dgkd protein_coding protein_coding MGP_AJ_T0021157.1 MGP_AJ_G0016252.1 mouse_genomes_project 1 85971348 85976331 + Dgkd protein_coding retained_intron MGP_AJ_T0021158.1 MGP_AJ_G0016252.1 mouse_genomes_project 1 85974450 85981244 + MGP_AJ_P0021158 Dgkd protein_coding protein_coding MGP_AJ_T0017042.1 MGP_AJ_G0015090.1 mouse_genomes_project 1 145189645 145192579 - A230059L01Rik processed_transcript antisense MGP_AJ_T0017043.1 MGP_AJ_G0015090.1 mouse_genomes_project 1 145191281 145194599 - A230059L01Rik processed_transcript TEC MGP_AJ_T0002836.1 MGP_AJ_G0002679.1 mouse_genomes_project 1 73174921 73179966 + Gm28294 antisense antisense MGP_AJ_T0005987.1 MGP_AJ_G0005015.1 mouse_genomes_project 1 165500002 165502549 - Gm16701 lincRNA lincRNA MGP_AJ_T0012293.1 MGP_AJ_G0010388.1 mouse_genomes_project 1 153510963 153511174 + processed_pseudogene processed_pseudogene MGP_AJ_T0011919.1 MGP_AJ_G0010014.1 mouse_genomes_project 1 20134677 20135479 + processed_pseudogene processed_pseudogene MGP_AJ_T0011977.1 MGP_AJ_G0010072.1 mouse_genomes_project 1 36939573 36939856 - processed_pseudogene processed_pseudogene MGP_AJ_T0000567.1 MGP_AJ_G0000508.1 mouse_genomes_project 1 93566107 93568645 + TEC TEC MGP_AJ_T0002960.1 MGP_AJ_G0002777.1 mouse_genomes_project 1 176203270 176204049 - Gm26801 antisense antisense MGP_AJ_T0002961.1 MGP_AJ_G0002777.1 mouse_genomes_project 1 176204011 176218273 - Gm26801 antisense antisense MGP_AJ_T0099162.1 MGP_AJ_G0037128.1 mouse_genomes_project 1 43374455 43374562 - Gm23216 snRNA snRNA MGP_AJ_T0009542.1 MGP_AJ_G0007664.1 mouse_genomes_project 1 156976060 156976169 + Mir488 miRNA miRNA MGP_AJ_T0006038.1 MGP_AJ_G0005053.1 mouse_genomes_project 1 183967537 183975098 + Gm37662 lincRNA lincRNA MGP_AJ_T0000651.1 MGP_AJ_G0000590.1 mouse_genomes_project 1 136484435 136485607 + TEC TEC MGP_AJ_T0002895.1 MGP_AJ_G0002724.1 mouse_genomes_project 1 133598895 133603098 + Gm10535 antisense antisense MGP_AJ_T0099164.1 MGP_AJ_G0037130.1 mouse_genomes_project 1 50209642 50209751 - Gm23460 snRNA snRNA MGP_AJ_T0020377.1 MGP_AJ_G0016109.1 mouse_genomes_project 1 69446591 69469073 + MGP_AJ_P0020377 Atic protein_coding protein_coding MGP_AJ_T0020378.1 MGP_AJ_G0016109.1 mouse_genomes_project 1 69446620 69452640 + Atic protein_coding retained_intron MGP_AJ_T0020379.1 MGP_AJ_G0016109.1 mouse_genomes_project 1 69446620 69449393 + Atic protein_coding retained_intron MGP_AJ_T0020380.1 MGP_AJ_G0016109.1 mouse_genomes_project 1 69446620 69462805 + Atic protein_coding retained_intron MGP_AJ_T0020381.1 MGP_AJ_G0016109.1 mouse_genomes_project 1 69446654 69452640 + Atic protein_coding retained_intron MGP_AJ_T0020382.1 MGP_AJ_G0016109.1 mouse_genomes_project 1 69458307 69462402 + Atic protein_coding retained_intron MGP_AJ_T0024320.1 MGP_AJ_G0016943.1 mouse_genomes_project 1 192203624 192227564 - MGP_AJ_P0024320 Camk1g protein_coding protein_coding MGP_AJ_T0024321.1 MGP_AJ_G0016943.1 mouse_genomes_project 1 192203624 192227491 - MGP_AJ_P0024321 Camk1g protein_coding protein_coding MGP_AJ_T0024322.1 MGP_AJ_G0016943.1 mouse_genomes_project 1 192206037 192217043 - MGP_AJ_P0024322 Camk1g protein_coding protein_coding MGP_AJ_T0024323.1 MGP_AJ_G0016943.1 mouse_genomes_project 1 192212066 192227511 - Camk1g protein_coding retained_intron MGP_AJ_T0012203.1 MGP_AJ_G0010298.1 mouse_genomes_project 1 115875839 115876313 + processed_pseudogene processed_pseudogene MGP_AJ_T0100402.1 MGP_AJ_G0038368.1 mouse_genomes_project 1 11091252 11091383 - Gm26273 snoRNA snoRNA MGP_AJ_T0021472.1 MGP_AJ_G0016327.1 mouse_genomes_project 1 91911964 91922200 + MGP_AJ_P0021472 Bok protein_coding protein_coding MGP_AJ_T0021473.1 MGP_AJ_G0016327.1 mouse_genomes_project 1 91912006 91921646 + MGP_AJ_P0021473 Bok protein_coding protein_coding MGP_AJ_T0021474.1 MGP_AJ_G0016327.1 mouse_genomes_project 1 91912567 91920524 + MGP_AJ_P0021474 Bok protein_coding protein_coding MGP_AJ_T0021475.1 MGP_AJ_G0016327.1 mouse_genomes_project 1 91915559 91921905 + MGP_AJ_P0021475 Bok protein_coding protein_coding MGP_AJ_T0021476.1 MGP_AJ_G0016327.1 mouse_genomes_project 1 91920269 91921891 + Bok protein_coding processed_transcript MGP_AJ_T0011922.1 MGP_AJ_G0010017.1 mouse_genomes_project 1 20872970 20873958 + processed_pseudogene processed_pseudogene MGP_AJ_T0000453.1 MGP_AJ_G0000394.1 mouse_genomes_project 1 37726891 37728221 - TEC TEC MGP_AJ_T0021026.1 MGP_AJ_G0016227.1 mouse_genomes_project 1 84354940 84369596 - MGP_AJ_P0021026 Ncl protein_coding protein_coding MGP_AJ_T0021027.1 MGP_AJ_G0016227.1 mouse_genomes_project 1 84360713 84369560 - Ncl protein_coding retained_intron MGP_AJ_T0021028.1 MGP_AJ_G0016227.1 mouse_genomes_project 1 84360714 84361430 - Ncl protein_coding retained_intron MGP_AJ_T0021029.1 MGP_AJ_G0016227.1 mouse_genomes_project 1 84360782 84362282 - Ncl protein_coding retained_intron MGP_AJ_T0021030.1 MGP_AJ_G0016227.1 mouse_genomes_project 1 84361319 84362525 - Ncl protein_coding retained_intron MGP_AJ_T0021031.1 MGP_AJ_G0016227.1 mouse_genomes_project 1 84367529 84369165 - MGP_AJ_P0021031 Ncl protein_coding protein_coding MGP_AJ_T0005894.1 MGP_AJ_G0004940.1 mouse_genomes_project 1 122892087 123241139 - lincRNA lincRNA MGP_AJ_T0006023.1 MGP_AJ_G0005044.1 mouse_genomes_project 1 182594055 182656986 + Gm34068 lincRNA lincRNA MGP_AJ_T0000616.1 MGP_AJ_G0000557.1 mouse_genomes_project 1 128049508 128052195 + TEC TEC MGP_AJ_T0019235.1 MGP_AJ_G0015894.1 mouse_genomes_project 1 32103458 32108484 + MGP_AJ_P0019235 protein_coding protein_coding MGP_AJ_T0019236.1 MGP_AJ_G0015894.1 mouse_genomes_project 1 32103469 32105181 + MGP_AJ_P0019236 protein_coding nonsense_mediated_decay MGP_AJ_T0005812.1 MGP_AJ_G0004872.1 mouse_genomes_project 1 80776078 80776621 + Gm28942 lincRNA lincRNA MGP_AJ_T0012213.1 MGP_AJ_G0010308.1 mouse_genomes_project 1 118252161 118252391 + processed_pseudogene processed_pseudogene MGP_AJ_T0009548.1 MGP_AJ_G0007670.1 mouse_genomes_project 1 164204421 164204564 + Gm44458 miRNA miRNA MGP_AJ_T0003005.1 MGP_AJ_G0002811.1 mouse_genomes_project 1 192144276 192145400 - Gm37650 antisense antisense MGP_AJ_T0011889.1 MGP_AJ_G0009984.1 mouse_genomes_project 1 10399961 10400282 + processed_pseudogene processed_pseudogene MGP_AJ_T0012192.1 MGP_AJ_G0010287.1 mouse_genomes_project 1 110348444 110352659 - processed_pseudogene processed_pseudogene MGP_AJ_T0019558.1 MGP_AJ_G0015958.1 mouse_genomes_project 1 40409807 40417360 + MGP_AJ_P0019558 Pou3f3 protein_coding protein_coding MGP_AJ_T0005883.1 MGP_AJ_G0004932.1 mouse_genomes_project 1 119145916 119151039 + Gm29346 lincRNA lincRNA MGP_AJ_T0011988.1 MGP_AJ_G0010083.1 mouse_genomes_project 1 41720042 41720222 - processed_pseudogene processed_pseudogene MGP_AJ_T0019671.1 MGP_AJ_G0015980.1 mouse_genomes_project 1 43590525 43608118 - MGP_AJ_P0019671 Slc40a1 protein_coding protein_coding MGP_AJ_T0019672.1 MGP_AJ_G0015980.1 mouse_genomes_project 1 43597710 43608145 - Slc40a1 protein_coding retained_intron MGP_AJ_T0019673.1 MGP_AJ_G0015980.1 mouse_genomes_project 1 43601452 43605845 - Slc40a1 protein_coding processed_transcript MGP_AJ_T0019674.1 MGP_AJ_G0015980.1 mouse_genomes_project 1 43601460 43607798 - Slc40a1 protein_coding processed_transcript MGP_AJ_T0019675.1 MGP_AJ_G0015980.1 mouse_genomes_project 1 43603751 43609055 - MGP_AJ_P0019675 Slc40a1 protein_coding protein_coding MGP_AJ_T0019676.1 MGP_AJ_G0015980.1 mouse_genomes_project 1 43603751 43609055 - MGP_AJ_P0019676 Slc40a1 protein_coding protein_coding MGP_AJ_T0019677.1 MGP_AJ_G0015980.1 mouse_genomes_project 1 43603751 43609055 - MGP_AJ_P0019677 Slc40a1 protein_coding protein_coding MGP_AJ_T0019678.1 MGP_AJ_G0015980.1 mouse_genomes_project 1 43606267 43609059 - Slc40a1 protein_coding retained_intron MGP_AJ_T0002805.1 MGP_AJ_G0002659.1 mouse_genomes_project 1 53041393 53051550 + Gm10561 antisense antisense MGP_AJ_T0020360.1 MGP_AJ_G0016105.1 mouse_genomes_project 1 67719209 68150326 + Spag16 protein_coding processed_transcript MGP_AJ_T0020361.1 MGP_AJ_G0016105.1 mouse_genomes_project 1 67719210 68150227 + Spag16 protein_coding processed_transcript MGP_AJ_T0020362.1 MGP_AJ_G0016105.1 mouse_genomes_project 1 67719227 68610546 + MGP_AJ_P0020362 Spag16 protein_coding protein_coding MGP_AJ_T0020363.1 MGP_AJ_G0016105.1 mouse_genomes_project 1 67719231 67816531 + MGP_AJ_P0020363 Spag16 protein_coding protein_coding MGP_AJ_T0020364.1 MGP_AJ_G0016105.1 mouse_genomes_project 1 67724329 67766349 + Spag16 protein_coding processed_transcript MGP_AJ_T0020365.1 MGP_AJ_G0016105.1 mouse_genomes_project 1 67836565 68610546 + Spag16 protein_coding processed_transcript MGP_AJ_T0020366.1 MGP_AJ_G0016105.1 mouse_genomes_project 1 67836592 68165060 + Spag16 protein_coding processed_transcript MGP_AJ_T0000384.1 MGP_AJ_G0000328.1 mouse_genomes_project 1 11569012 11569451 - TEC TEC MGP_AJ_T0000362.1 MGP_AJ_G0000306.1 mouse_genomes_project 1 5807923 5811455 - TEC TEC MGP_AJ_T0019121.1 MGP_AJ_G0015873.1 mouse_genomes_project 1 22469561 22629815 - MGP_AJ_P0019121 Adgrb3 protein_coding protein_coding MGP_AJ_T0019122.1 MGP_AJ_G0015873.1 mouse_genomes_project 1 22469635 23227384 - MGP_AJ_P0019122 Adgrb3 protein_coding protein_coding MGP_AJ_T0019123.1 MGP_AJ_G0015873.1 mouse_genomes_project 1 22469635 23230736 - MGP_AJ_P0019123 Adgrb3 protein_coding protein_coding MGP_AJ_T0019124.1 MGP_AJ_G0015873.1 mouse_genomes_project 1 22469635 23230930 - MGP_AJ_P0019124 Adgrb3 protein_coding protein_coding MGP_AJ_T0019125.1 MGP_AJ_G0015873.1 mouse_genomes_project 1 22469763 23228005 - MGP_AJ_P0019125 Adgrb3 protein_coding protein_coding MGP_AJ_T0019126.1 MGP_AJ_G0015873.1 mouse_genomes_project 1 22469776 22630089 - Adgrb3 protein_coding retained_intron MGP_AJ_T0019127.1 MGP_AJ_G0015873.1 mouse_genomes_project 1 22494212 22630035 - Adgrb3 protein_coding retained_intron MGP_AJ_T0019128.1 MGP_AJ_G0015873.1 mouse_genomes_project 1 22531765 22605702 - Adgrb3 protein_coding processed_transcript MGP_AJ_T0019129.1 MGP_AJ_G0015873.1 mouse_genomes_project 1 22604411 22606671 - Adgrb3 protein_coding retained_intron MGP_AJ_T0019130.1 MGP_AJ_G0015873.1 mouse_genomes_project 1 22618995 22629816 - Adgrb3 protein_coding retained_intron MGP_AJ_T0019131.1 MGP_AJ_G0015873.1 mouse_genomes_project 1 22895920 23227592 - Adgrb3 protein_coding retained_intron MGP_AJ_T0012201.1 MGP_AJ_G0010296.1 mouse_genomes_project 1 114969628 114970023 + processed_pseudogene processed_pseudogene MGP_AJ_T0021989.1 MGP_AJ_G0016445.1 mouse_genomes_project 1 130350820 130372952 + MGP_AJ_P0021989 Nucks1 protein_coding protein_coding MGP_AJ_T0021990.1 MGP_AJ_G0016445.1 mouse_genomes_project 1 130350842 130378357 + MGP_AJ_P0021990 Nucks1 protein_coding protein_coding MGP_AJ_T0021991.1 MGP_AJ_G0016445.1 mouse_genomes_project 1 130369435 130370344 + Nucks1 protein_coding retained_intron MGP_AJ_T0021518.1 MGP_AJ_G0016340.1 mouse_genomes_project 1 95085235 95143624 - MGP_AJ_P0021518 Slco4c1 protein_coding protein_coding MGP_AJ_T0024078.1 MGP_AJ_G0016899.1 mouse_genomes_project 1 185603966 185623020 - MGP_AJ_P0024078 Rrp15 protein_coding protein_coding MGP_AJ_T0024079.1 MGP_AJ_G0016899.1 mouse_genomes_project 1 185604080 185622987 - Rrp15 protein_coding retained_intron MGP_AJ_T0000808.1 MGP_AJ_G0000744.1 mouse_genomes_project 1 193949265 193951495 - TEC TEC MGP_AJ_T0011244.1 MGP_AJ_G0009366.1 mouse_genomes_project 1 47992074 47992206 - Gm27330 misc_RNA misc_RNA MGP_AJ_T0022922.1 MGP_AJ_G0016625.1 mouse_genomes_project 1 159389196 159458076 + MGP_AJ_P0022922 Rc3h1 protein_coding protein_coding MGP_AJ_T0022923.1 MGP_AJ_G0016625.1 mouse_genomes_project 1 159413003 159450909 + MGP_AJ_P0022923 Rc3h1 protein_coding protein_coding MGP_AJ_T0022924.1 MGP_AJ_G0016625.1 mouse_genomes_project 1 159433879 159435034 + Rc3h1 protein_coding retained_intron MGP_AJ_T0024107.1 MGP_AJ_G0016905.1 mouse_genomes_project 1 187844728 187882121 - MGP_AJ_P0024107 Kctd3 protein_coding nonsense_mediated_decay MGP_AJ_T0024108.1 MGP_AJ_G0016905.1 mouse_genomes_project 1 187844728 187882133 - MGP_AJ_P0024108 Kctd3 protein_coding protein_coding MGP_AJ_T0024109.1 MGP_AJ_G0016905.1 mouse_genomes_project 1 187846104 187848628 - Kctd3 protein_coding retained_intron MGP_AJ_T0024110.1 MGP_AJ_G0016905.1 mouse_genomes_project 1 187846320 187848246 - Kctd3 protein_coding retained_intron MGP_AJ_T0024111.1 MGP_AJ_G0016905.1 mouse_genomes_project 1 187846432 187852604 - MGP_AJ_P0024111 Kctd3 protein_coding protein_coding MGP_AJ_T0024112.1 MGP_AJ_G0016905.1 mouse_genomes_project 1 187846475 187847696 - Kctd3 protein_coding retained_intron MGP_AJ_T0024113.1 MGP_AJ_G0016905.1 mouse_genomes_project 1 187847757 187850617 - Kctd3 protein_coding processed_transcript MGP_AJ_T0024114.1 MGP_AJ_G0016905.1 mouse_genomes_project 1 187852554 187856109 - Kctd3 protein_coding retained_intron MGP_AJ_T0024115.1 MGP_AJ_G0016905.1 mouse_genomes_project 1 187854994 187882134 - Kctd3 protein_coding retained_intron MGP_AJ_T0024116.1 MGP_AJ_G0016905.1 mouse_genomes_project 1 187869348 187871930 - Kctd3 protein_coding retained_intron MGP_AJ_T0022342.1 MGP_AJ_G0016519.1 mouse_genomes_project 1 134638731 134686137 + MGP_AJ_P0022342 Kif21b protein_coding protein_coding MGP_AJ_T0022343.1 MGP_AJ_G0016519.1 mouse_genomes_project 1 134638796 134657337 + Kif21b protein_coding retained_intron MGP_AJ_T0022344.1 MGP_AJ_G0016519.1 mouse_genomes_project 1 134639064 134686147 + MGP_AJ_P0022344 Kif21b protein_coding unknown_likely_coding MGP_AJ_T0022345.1 MGP_AJ_G0016519.1 mouse_genomes_project 1 134668472 134673159 + MGP_AJ_P0022345 Kif21b protein_coding nonsense_mediated_decay MGP_AJ_T0022346.1 MGP_AJ_G0016519.1 mouse_genomes_project 1 134671063 134672945 + Kif21b protein_coding retained_intron MGP_AJ_T0022347.1 MGP_AJ_G0016519.1 mouse_genomes_project 1 134677452 134680438 + Kif21b protein_coding processed_transcript MGP_AJ_T0102174.1 MGP_AJ_G0039917.1 mouse_genomes_project 1 102975333 102976693 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0023652.1 MGP_AJ_G0016806.1 mouse_genomes_project 1 172918742 172989115 + MGP_AJ_P0023652 Spta1 protein_coding protein_coding MGP_AJ_T0023653.1 MGP_AJ_G0016806.1 mouse_genomes_project 1 172960068 172988223 + Spta1 protein_coding retained_intron MGP_AJ_T0005828.1 MGP_AJ_G0004886.1 mouse_genomes_project 1 87490138 87547676 - Gm28342 lincRNA lincRNA MGP_AJ_T0000426.1 MGP_AJ_G0000368.1 mouse_genomes_project 1 30095138 30098660 + TEC TEC MGP_AJ_T0005907.1 MGP_AJ_G0004952.1 mouse_genomes_project 1 132297579 132300726 + Gm28441 lincRNA lincRNA MGP_AJ_T0005734.1 MGP_AJ_G0004815.1 mouse_genomes_project 1 53832129 53833355 + 1700003I22Rik lincRNA lincRNA MGP_AJ_T0005735.1 MGP_AJ_G0004815.1 mouse_genomes_project 1 53832174 53833289 + 1700003I22Rik lincRNA lincRNA MGP_AJ_T0024031.1 MGP_AJ_G0016889.1 mouse_genomes_project 1 183691243 183726310 - MGP_AJ_P0024031 Marc2 protein_coding protein_coding MGP_AJ_T0024032.1 MGP_AJ_G0016889.1 mouse_genomes_project 1 183691853 183707919 - Marc2 protein_coding processed_transcript MGP_AJ_T0024033.1 MGP_AJ_G0016889.1 mouse_genomes_project 1 183691857 183701561 - Marc2 protein_coding retained_intron MGP_AJ_T0024034.1 MGP_AJ_G0016889.1 mouse_genomes_project 1 183691867 183707704 - Marc2 protein_coding processed_transcript MGP_AJ_T0024035.1 MGP_AJ_G0016889.1 mouse_genomes_project 1 183691869 183697979 - Marc2 protein_coding retained_intron MGP_AJ_T0024036.1 MGP_AJ_G0016889.1 mouse_genomes_project 1 183691935 183707694 - Marc2 protein_coding processed_transcript MGP_AJ_T0024037.1 MGP_AJ_G0016889.1 mouse_genomes_project 1 183697771 183726237 - Marc2 protein_coding processed_transcript MGP_AJ_T0024038.1 MGP_AJ_G0016889.1 mouse_genomes_project 1 183700910 183726880 - MGP_AJ_P0024038 Marc2 protein_coding protein_coding MGP_AJ_T0024039.1 MGP_AJ_G0016889.1 mouse_genomes_project 1 183708221 183726000 - Marc2 protein_coding processed_transcript MGP_AJ_T0024040.1 MGP_AJ_G0016889.1 mouse_genomes_project 1 183709376 183726276 - Marc2 protein_coding retained_intron MGP_AJ_T0002867.1 MGP_AJ_G0002705.1 mouse_genomes_project 1 104904420 104937401 + D630008O14Rik antisense antisense MGP_AJ_T0002868.1 MGP_AJ_G0002705.1 mouse_genomes_project 1 104904420 104921465 + D630008O14Rik antisense antisense MGP_AJ_T0012317.1 MGP_AJ_G0010412.1 mouse_genomes_project 1 164003862 164005442 + processed_pseudogene processed_pseudogene MGP_AJ_T0009545.1 MGP_AJ_G0007667.1 mouse_genomes_project 1 160723023 160723133 + Mir199a-2 miRNA miRNA MGP_AJ_T0006016.1 MGP_AJ_G0005038.1 mouse_genomes_project 1 181207495 181223108 + 1700047M11Rik lincRNA lincRNA MGP_AJ_T0006017.1 MGP_AJ_G0005038.1 mouse_genomes_project 1 181220594 181223070 + 1700047M11Rik lincRNA lincRNA MGP_AJ_T0000521.1 MGP_AJ_G0000462.1 mouse_genomes_project 1 76330743 76331552 + TEC TEC MGP_AJ_T0012335.1 MGP_AJ_G0010430.1 mouse_genomes_project 1 170300380 170300932 + processed_pseudogene processed_pseudogene MGP_AJ_T0011255.1 MGP_AJ_G0009377.1 mouse_genomes_project 1 129541634 129541987 - Gm25717 misc_RNA misc_RNA MGP_AJ_T0019809.1 MGP_AJ_G0016006.1 mouse_genomes_project 1 51609735 51995013 - MGP_AJ_P0019809 Hecw2 protein_coding protein_coding MGP_AJ_T0019810.1 MGP_AJ_G0016006.1 mouse_genomes_project 1 51609741 51995999 - MGP_AJ_P0019810 Hecw2 protein_coding protein_coding MGP_AJ_T0019811.1 MGP_AJ_G0016006.1 mouse_genomes_project 1 51635437 51643917 - Hecw2 protein_coding processed_transcript MGP_AJ_T0019812.1 MGP_AJ_G0016006.1 mouse_genomes_project 1 51641762 51669249 - Hecw2 protein_coding processed_transcript MGP_AJ_T0019813.1 MGP_AJ_G0016006.1 mouse_genomes_project 1 51731664 51995999 - MGP_AJ_P0019813 Hecw2 protein_coding protein_coding MGP_AJ_T0019814.1 MGP_AJ_G0016006.1 mouse_genomes_project 1 51742376 51996133 - Hecw2 protein_coding retained_intron MGP_AJ_T0021966.1 MGP_AJ_G0016439.1 mouse_genomes_project 1 130083958 130117394 + MGP_AJ_P0021966 Ctse protein_coding protein_coding MGP_AJ_T0021967.1 MGP_AJ_G0016439.1 mouse_genomes_project 1 130084146 130117392 + MGP_AJ_P0021967 Ctse protein_coding protein_coding MGP_AJ_T0021968.1 MGP_AJ_G0016439.1 mouse_genomes_project 1 130103805 130107341 + Ctse protein_coding retained_intron MGP_AJ_T0098882.1 MGP_AJ_G0036865.1 mouse_genomes_project 1 151156749 151177624 - Gm28792 sense_intronic sense_intronic MGP_AJ_T0023256.1 MGP_AJ_G0016695.1 mouse_genomes_project 1 165962267 165983363 - MGP_AJ_P0023256 Lrrc52 protein_coding protein_coding MGP_AJ_T0100429.1 MGP_AJ_G0038395.1 mouse_genomes_project 1 57598282 57598366 + Gm26293 snoRNA snoRNA MGP_AJ_T0011860.1 MGP_AJ_G0009955.1 mouse_genomes_project 1 4158330 4158655 + processed_pseudogene processed_pseudogene MGP_AJ_T0100484.1 MGP_AJ_G0038450.1 mouse_genomes_project 1 159521524 159521601 + Snord47 snoRNA snoRNA MGP_AJ_T0020673.1 MGP_AJ_G0016163.1 mouse_genomes_project 1 73142814 73146388 - MGP_AJ_P0020673 A630095N17Rik protein_coding protein_coding MGP_AJ_T0020674.1 MGP_AJ_G0016163.1 mouse_genomes_project 1 73142975 73154793 - MGP_AJ_P0020674 A630095N17Rik protein_coding protein_coding MGP_AJ_T0020675.1 MGP_AJ_G0016163.1 mouse_genomes_project 1 73153565 73154805 - MGP_AJ_P0020675 A630095N17Rik protein_coding nonsense_mediated_decay MGP_AJ_T0000734.1 MGP_AJ_G0000673.1 mouse_genomes_project 1 166876460 166878736 - TEC TEC MGP_AJ_T0005761.1 MGP_AJ_G0004835.1 mouse_genomes_project 1 61868246 61872532 + Gm13749 lincRNA lincRNA MGP_AJ_T0000370.1 MGP_AJ_G0000314.1 mouse_genomes_project 1 8118383 8120306 - TEC TEC MGP_AJ_T0000371.1 MGP_AJ_G0000315.1 mouse_genomes_project 1 8691132 8694171 - TEC TEC MGP_AJ_T0099143.1 MGP_AJ_G0037109.1 mouse_genomes_project 1 1637456 1637563 + Gm22307 snRNA snRNA MGP_AJ_T0005758.1 MGP_AJ_G0004833.1 mouse_genomes_project 1 61016732 61026415 + Gm20342 lincRNA lincRNA MGP_AJ_T0000680.1 MGP_AJ_G0000619.1 mouse_genomes_project 1 151364454 151364892 + TEC TEC MGP_AJ_T0019191.1 MGP_AJ_G0015889.1 mouse_genomes_project 1 31457370 31513112 - MGP_AJ_P0019191 Bend6 protein_coding protein_coding MGP_AJ_T0019192.1 MGP_AJ_G0015889.1 mouse_genomes_project 1 31457370 31513068 - MGP_AJ_P0019192 Bend6 protein_coding protein_coding MGP_AJ_T0019193.1 MGP_AJ_G0015889.1 mouse_genomes_project 1 31468011 31489024 - Bend6 protein_coding processed_transcript MGP_AJ_T0019194.1 MGP_AJ_G0015889.1 mouse_genomes_project 1 31468472 31489386 - Bend6 protein_coding retained_intron MGP_AJ_T0019195.1 MGP_AJ_G0015889.1 mouse_genomes_project 1 31479085 31489034 - Bend6 protein_coding processed_transcript MGP_AJ_T0021415.1 MGP_AJ_G0016317.1 mouse_genomes_project 1 91383805 91448139 + MGP_AJ_P0021415 Crocc2 protein_coding protein_coding MGP_AJ_T0021416.1 MGP_AJ_G0016317.1 mouse_genomes_project 1 91395109 91445597 + MGP_AJ_P0021416 Crocc2 protein_coding unknown_likely_coding MGP_AJ_T0022261.1 MGP_AJ_G0016504.1 mouse_genomes_project 1 133791607 133811102 - MGP_AJ_P0022261 Timm17a protein_coding protein_coding MGP_AJ_T0022262.1 MGP_AJ_G0016504.1 mouse_genomes_project 1 133798157 133807391 - Timm17a protein_coding retained_intron MGP_AJ_T0022263.1 MGP_AJ_G0016504.1 mouse_genomes_project 1 133800923 133811015 - MGP_AJ_P0022263 Timm17a protein_coding protein_coding MGP_AJ_T0022264.1 MGP_AJ_G0016504.1 mouse_genomes_project 1 133806676 133808664 - MGP_AJ_P0022264 Timm17a protein_coding protein_coding MGP_AJ_T0100491.1 MGP_AJ_G0038457.1 mouse_genomes_project 1 171514540 171514663 - Gm26077 snoRNA snoRNA MGP_AJ_T0023919.1 MGP_AJ_G0016864.1 mouse_genomes_project 1 180262571 180373186 + MGP_AJ_P0023919 Cnih3 protein_coding protein_coding MGP_AJ_T0023920.1 MGP_AJ_G0016864.1 mouse_genomes_project 1 180262573 180373914 + MGP_AJ_P0023920 Cnih3 protein_coding protein_coding MGP_AJ_T0023921.1 MGP_AJ_G0016864.1 mouse_genomes_project 1 180263141 180372564 + MGP_AJ_P0023921 Cnih3 protein_coding protein_coding MGP_AJ_T0099210.1 MGP_AJ_G0037176.1 mouse_genomes_project 1 139797524 139797631 + Gm25457 snRNA snRNA MGP_AJ_T0000577.1 MGP_AJ_G0000518.1 mouse_genomes_project 1 104068159 104072514 + TEC TEC MGP_AJ_T0019925.1 MGP_AJ_G0016027.1 mouse_genomes_project 1 55818051 55847733 + MGP_AJ_P0019925 Sgol2a protein_coding protein_coding MGP_AJ_T0019926.1 MGP_AJ_G0016027.1 mouse_genomes_project 1 55844549 55847732 + Sgol2a protein_coding retained_intron MGP_AJ_T0012148.1 MGP_AJ_G0010243.1 mouse_genomes_project 1 93494023 93494871 - processed_pseudogene processed_pseudogene MGP_AJ_T0005803.1 MGP_AJ_G0004866.1 mouse_genomes_project 1 76747197 77171223 - lincRNA lincRNA MGP_AJ_T0002937.1 MGP_AJ_G0002758.1 mouse_genomes_project 1 163306731 163318062 - Gm32569 antisense antisense MGP_AJ_T0002938.1 MGP_AJ_G0002758.1 mouse_genomes_project 1 163306857 163408230 - Gm32569 antisense antisense MGP_AJ_T0023754.1 MGP_AJ_G0016832.1 mouse_genomes_project 1 177183515 177198045 - MGP_AJ_P0023754 protein_coding nonsense_mediated_decay MGP_AJ_T0023755.1 MGP_AJ_G0016832.1 mouse_genomes_project 1 177183575 177191039 - MGP_AJ_P0023755 protein_coding nonsense_mediated_decay MGP_AJ_T0023756.1 MGP_AJ_G0016832.1 mouse_genomes_project 1 177184061 177189824 - MGP_AJ_P0023756 protein_coding nonsense_mediated_decay MGP_AJ_T0002873.1 MGP_AJ_G0002709.1 mouse_genomes_project 1 126091727 126112203 - 2900009J06Rik antisense antisense MGP_AJ_T0002874.1 MGP_AJ_G0002709.1 mouse_genomes_project 1 126091727 126112165 - 2900009J06Rik antisense antisense MGP_AJ_T0011867.1 MGP_AJ_G0009962.1 mouse_genomes_project 1 4867532 4867818 + processed_pseudogene processed_pseudogene MGP_AJ_T0023486.1 MGP_AJ_G0016752.1 mouse_genomes_project 1 170483544 170519528 + MGP_AJ_P0023486 Slamf6 protein_coding protein_coding MGP_AJ_T0023487.1 MGP_AJ_G0016752.1 mouse_genomes_project 1 170483566 170509235 + MGP_AJ_P0023487 Slamf6 protein_coding protein_coding MGP_AJ_T0023488.1 MGP_AJ_G0016752.1 mouse_genomes_project 1 170483711 170484709 + Slamf6 protein_coding retained_intron MGP_AJ_T0023489.1 MGP_AJ_G0016752.1 mouse_genomes_project 1 170483737 170513402 + MGP_AJ_P0023489 Slamf6 protein_coding protein_coding MGP_AJ_T0023490.1 MGP_AJ_G0016752.1 mouse_genomes_project 1 170485520 170498747 + MGP_AJ_P0023490 Slamf6 protein_coding protein_coding MGP_AJ_T0023491.1 MGP_AJ_G0016752.1 mouse_genomes_project 1 170496164 170499084 + Slamf6 protein_coding retained_intron MGP_AJ_T0023492.1 MGP_AJ_G0016752.1 mouse_genomes_project 1 170507951 170514195 + Slamf6 protein_coding processed_transcript MGP_AJ_T0099180.1 MGP_AJ_G0037146.1 mouse_genomes_project 1 70152879 70153070 + Gm25939 snRNA snRNA MGP_AJ_T0000610.1 MGP_AJ_G0000551.1 mouse_genomes_project 1 126427229 126431112 - TEC TEC MGP_AJ_T0022072.1 MGP_AJ_G0016461.1 mouse_genomes_project 1 131406293 131475929 - MGP_AJ_P0022072 Mdm4 protein_coding protein_coding MGP_AJ_T0022073.1 MGP_AJ_G0016461.1 mouse_genomes_project 1 131408462 131419503 - Mdm4 protein_coding processed_transcript MGP_AJ_T0022074.1 MGP_AJ_G0016461.1 mouse_genomes_project 1 131441401 131455028 - MGP_AJ_P0022074 Mdm4 protein_coding unknown_likely_coding MGP_AJ_T0022075.1 MGP_AJ_G0016461.1 mouse_genomes_project 1 131446326 131469655 - Mdm4 protein_coding processed_transcript MGP_AJ_T0022076.1 MGP_AJ_G0016461.1 mouse_genomes_project 1 131446329 131454422 - Mdm4 protein_coding retained_intron MGP_AJ_T0022077.1 MGP_AJ_G0016461.1 mouse_genomes_project 1 131449164 131451114 - Mdm4 protein_coding retained_intron MGP_AJ_T0022078.1 MGP_AJ_G0016461.1 mouse_genomes_project 1 131450862 131454225 - Mdm4 protein_coding retained_intron MGP_AJ_T0022079.1 MGP_AJ_G0016461.1 mouse_genomes_project 1 131459861 131475921 - Mdm4 protein_coding retained_intron MGP_AJ_T0022080.1 MGP_AJ_G0016461.1 mouse_genomes_project 1 131459915 131481381 - MGP_AJ_P0022080 Mdm4 protein_coding protein_coding MGP_AJ_T0022081.1 MGP_AJ_G0016461.1 mouse_genomes_project 1 131468497 131475929 - Mdm4 protein_coding retained_intron MGP_AJ_T0012341.1 MGP_AJ_G0010436.1 mouse_genomes_project 1 175648563 175649402 + processed_pseudogene processed_pseudogene MGP_AJ_T0000445.1 MGP_AJ_G0000386.1 mouse_genomes_project 1 34925802 34926148 - TEC TEC MGP_AJ_T0019297.1 MGP_AJ_G0015906.1 mouse_genomes_project 1 33966909 34016464 + MGP_AJ_P0019297 Fer1l5 protein_coding protein_coding MGP_AJ_T0019298.1 MGP_AJ_G0015906.1 mouse_genomes_project 1 33980104 33999225 + MGP_AJ_P0019298 Fer1l5 protein_coding nonsense_mediated_decay MGP_AJ_T0019299.1 MGP_AJ_G0015906.1 mouse_genomes_project 1 34011244 34016467 + MGP_AJ_P0019299 Fer1l5 protein_coding nonsense_mediated_decay MGP_AJ_T0022995.1 MGP_AJ_G0016639.1 mouse_genomes_project 1 160481816 160797332 - MGP_AJ_P0022995 Dnm3 protein_coding protein_coding MGP_AJ_T0022996.1 MGP_AJ_G0016639.1 mouse_genomes_project 1 160481821 160485045 - Dnm3 protein_coding retained_intron MGP_AJ_T0022997.1 MGP_AJ_G0016639.1 mouse_genomes_project 1 160486615 160982499 - MGP_AJ_P0022997 Dnm3 protein_coding protein_coding MGP_AJ_T0022998.1 MGP_AJ_G0016639.1 mouse_genomes_project 1 160489525 160982499 - MGP_AJ_P0022998 Dnm3 protein_coding protein_coding MGP_AJ_T0022999.1 MGP_AJ_G0016639.1 mouse_genomes_project 1 160490843 160495343 - Dnm3 protein_coding retained_intron MGP_AJ_T0023000.1 MGP_AJ_G0016639.1 mouse_genomes_project 1 160508385 160797276 - MGP_AJ_P0023000 Dnm3 protein_coding protein_coding MGP_AJ_T0023001.1 MGP_AJ_G0016639.1 mouse_genomes_project 1 160518633 160629188 - Dnm3 protein_coding retained_intron MGP_AJ_T0023002.1 MGP_AJ_G0016639.1 mouse_genomes_project 1 160774810 160797291 - Dnm3 protein_coding processed_transcript MGP_AJ_T0023003.1 MGP_AJ_G0016639.1 mouse_genomes_project 1 160784189 160815351 - Dnm3 protein_coding processed_transcript MGP_AJ_T0023004.1 MGP_AJ_G0016639.1 mouse_genomes_project 1 160819818 160982477 - Dnm3 protein_coding retained_intron MGP_AJ_T0023005.1 MGP_AJ_G0016639.1 mouse_genomes_project 1 160888529 160930454 - Dnm3 protein_coding processed_transcript MGP_AJ_T0023006.1 MGP_AJ_G0016639.1 mouse_genomes_project 1 160910923 160913398 - Dnm3 protein_coding retained_intron MGP_AJ_T0100426.1 MGP_AJ_G0038392.1 mouse_genomes_project 1 55979056 55979164 - Gm24548 snoRNA snoRNA MGP_AJ_T0000464.1 MGP_AJ_G0000405.1 mouse_genomes_project 1 45379277 45380183 + TEC TEC MGP_AJ_T0000487.1 MGP_AJ_G0000428.1 mouse_genomes_project 1 58906184 58908669 + TEC TEC MGP_AJ_T0018890.1 MGP_AJ_G0015818.1 mouse_genomes_project 1 8324896 8630995 + MGP_AJ_P0018890 Prex2 protein_coding protein_coding MGP_AJ_T0018891.1 MGP_AJ_G0015818.1 mouse_genomes_project 1 8324949 8328037 + Prex2 protein_coding retained_intron MGP_AJ_T0018892.1 MGP_AJ_G0015818.1 mouse_genomes_project 1 8426865 8479601 + Prex2 protein_coding retained_intron MGP_AJ_T0018893.1 MGP_AJ_G0015818.1 mouse_genomes_project 1 8470234 8490079 + Prex2 protein_coding retained_intron MGP_AJ_T0018896.1 MGP_AJ_G0015818.1 mouse_genomes_project 1 8593019 8625323 + MGP_AJ_P0018896 Prex2 protein_coding nonsense_mediated_decay MGP_AJ_T0018897.1 MGP_AJ_G0015818.1 mouse_genomes_project 1 8611333 8625522 + MGP_AJ_P0018897 Prex2 protein_coding nonsense_mediated_decay MGP_AJ_T0000735.1 MGP_AJ_G0000674.1 mouse_genomes_project 1 167181758 167182367 - TEC TEC MGP_AJ_T0002970.1 MGP_AJ_G0002785.1 mouse_genomes_project 1 181407334 181415754 + Gm37885 antisense antisense MGP_AJ_T0002971.1 MGP_AJ_G0002785.1 mouse_genomes_project 1 181413301 181414881 + Gm37885 antisense antisense MGP_AJ_T0000538.1 MGP_AJ_G0000479.1 mouse_genomes_project 1 81403667 81404470 - TEC TEC MGP_AJ_T0000736.1 MGP_AJ_G0000675.1 mouse_genomes_project 1 169930575 169931841 + TEC TEC MGP_AJ_T0009561.1 MGP_AJ_G0007683.1 mouse_genomes_project 1 183700942 183701024 - Mir1981 miRNA miRNA MGP_AJ_T0022082.1 MGP_AJ_G0016462.1 mouse_genomes_project 1 131497077 131520199 + MGP_AJ_P0022082 Pik3c2b protein_coding protein_coding MGP_AJ_T0022083.1 MGP_AJ_G0016462.1 mouse_genomes_project 1 131497422 131521003 + Pik3c2b protein_coding retained_intron MGP_AJ_T0022084.1 MGP_AJ_G0016462.1 mouse_genomes_project 1 131497422 131534601 + Pik3c2b protein_coding retained_intron MGP_AJ_T0022085.1 MGP_AJ_G0016462.1 mouse_genomes_project 1 131497422 131561756 + MGP_AJ_P0022085 Pik3c2b protein_coding protein_coding MGP_AJ_T0022086.1 MGP_AJ_G0016462.1 mouse_genomes_project 1 131497768 131561764 + MGP_AJ_P0022086 Pik3c2b protein_coding unknown_likely_coding MGP_AJ_T0011903.1 MGP_AJ_G0009998.1 mouse_genomes_project 1 15636556 15637541 - processed_pseudogene processed_pseudogene MGP_AJ_T0012330.1 MGP_AJ_G0010425.1 mouse_genomes_project 1 168073755 168074902 - processed_pseudogene processed_pseudogene MGP_AJ_T0002760.1 MGP_AJ_G0002623.1 mouse_genomes_project 1 14359004 14426928 + antisense antisense MGP_AJ_T0023649.1 MGP_AJ_G0016803.1 mouse_genomes_project 1 172868466 172869390 - MGP_AJ_P0023649 Olfr231 protein_coding protein_coding MGP_AJ_T0005736.1 MGP_AJ_G0004816.1 mouse_genomes_project 1 54352330 54354383 + Gm28240 lincRNA lincRNA MGP_AJ_T0023648.1 MGP_AJ_G0016802.1 mouse_genomes_project 1 172846193 172847141 + MGP_AJ_P0023648 Olfr427 protein_coding protein_coding MGP_AJ_T0099165.1 MGP_AJ_G0037131.1 mouse_genomes_project 1 51690027 51690141 - Gm24251 snRNA snRNA MGP_AJ_T0022244.1 MGP_AJ_G0016500.1 mouse_genomes_project 1 133639666 133648964 + MGP_AJ_P0022244 Arl8a protein_coding protein_coding MGP_AJ_T0022245.1 MGP_AJ_G0016500.1 mouse_genomes_project 1 133640511 133648964 + MGP_AJ_P0022245 Arl8a protein_coding protein_coding MGP_AJ_T0022246.1 MGP_AJ_G0016500.1 mouse_genomes_project 1 133644734 133646997 + Arl8a protein_coding retained_intron MGP_AJ_T0022247.1 MGP_AJ_G0016500.1 mouse_genomes_project 1 133646883 133648008 + Arl8a protein_coding retained_intron MGP_AJ_T0012264.1 MGP_AJ_G0010359.1 mouse_genomes_project 1 142657969 142659640 - processed_pseudogene processed_pseudogene MGP_AJ_T0005994.1 MGP_AJ_G0005021.1 mouse_genomes_project 1 169896604 169902180 - Gm20045 lincRNA lincRNA MGP_AJ_T0023659.1 MGP_AJ_G0016811.1 mouse_genomes_project 1 173229769 173247507 + MGP_AJ_P0023659 Olfr220 protein_coding protein_coding MGP_AJ_T0023660.1 MGP_AJ_G0016811.1 mouse_genomes_project 1 173246529 173247507 + MGP_AJ_P0023660 Olfr220 protein_coding protein_coding MGP_AJ_T0005900.1 MGP_AJ_G0004945.1 mouse_genomes_project 1 128855563 128863421 - Gm15675 lincRNA lincRNA MGP_AJ_T0102140.1 MGP_AJ_G0039884.1 mouse_genomes_project 1 18577929 18586194 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0000396.1 MGP_AJ_G0000340.1 mouse_genomes_project 1 20659531 20660254 - TEC TEC MGP_AJ_T0000397.1 MGP_AJ_G0000340.1 mouse_genomes_project 1 20659833 20660253 - TEC TEC MGP_AJ_T0020907.1 MGP_AJ_G0016206.1 mouse_genomes_project 1 81092581 81094982 + MGP_AJ_P0020907 Ccl20 protein_coding protein_coding MGP_AJ_T0020908.1 MGP_AJ_G0016206.1 mouse_genomes_project 1 81092589 81094983 + MGP_AJ_P0020908 Ccl20 protein_coding protein_coding MGP_AJ_T0020909.1 MGP_AJ_G0016206.1 mouse_genomes_project 1 81092608 81094983 + MGP_AJ_P0020909 Ccl20 protein_coding protein_coding MGP_AJ_T0011921.1 MGP_AJ_G0010016.1 mouse_genomes_project 1 20736418 20737062 - processed_pseudogene processed_pseudogene MGP_AJ_T0021751.1 MGP_AJ_G0016391.1 mouse_genomes_project 1 118988500 118994062 + MGP_AJ_P0021751 En1 protein_coding protein_coding MGP_AJ_T0012232.1 MGP_AJ_G0010327.1 mouse_genomes_project 1 126456692 126457172 - processed_pseudogene processed_pseudogene MGP_AJ_T0012166.1 MGP_AJ_G0010261.1 mouse_genomes_project 1 102683713 102684020 + processed_pseudogene processed_pseudogene MGP_AJ_T0019084.1 MGP_AJ_G0015864.1 mouse_genomes_project 1 20502636 20504417 - MGP_AJ_P0019084 4933415F23Rik protein_coding protein_coding MGP_AJ_T0012170.1 MGP_AJ_G0010265.1 mouse_genomes_project 1 103688056 103688382 + processed_pseudogene processed_pseudogene MGP_AJ_T0006053.1 MGP_AJ_G0005066.1 mouse_genomes_project 1 189896952 189898938 + Gm31373 lincRNA lincRNA MGP_AJ_T0024261.1 MGP_AJ_G0016934.1 mouse_genomes_project 1 191696339 191707608 - MGP_AJ_P0024261 Sertad4 protein_coding protein_coding MGP_AJ_T0024262.1 MGP_AJ_G0016934.1 mouse_genomes_project 1 191696340 191703599 - MGP_AJ_P0024262 Sertad4 protein_coding protein_coding MGP_AJ_T0024263.1 MGP_AJ_G0016934.1 mouse_genomes_project 1 191698914 191703599 - MGP_AJ_P0024263 Sertad4 protein_coding protein_coding MGP_AJ_T0024264.1 MGP_AJ_G0016934.1 mouse_genomes_project 1 191706053 191707338 - Sertad4 protein_coding processed_transcript MGP_AJ_T0017088.1 MGP_AJ_G0015102.1 mouse_genomes_project 1 193854093 193900002 + A330023F24Rik processed_transcript lincRNA MGP_AJ_T0017089.1 MGP_AJ_G0015102.1 mouse_genomes_project 1 193854103 193905958 + A330023F24Rik processed_transcript retained_intron MGP_AJ_T0017090.1 MGP_AJ_G0015102.1 mouse_genomes_project 1 193895772 193915572 + A330023F24Rik processed_transcript lincRNA MGP_AJ_T0017091.1 MGP_AJ_G0015102.1 mouse_genomes_project 1 193902638 193916547 + A330023F24Rik processed_transcript retained_intron MGP_AJ_T0012312.1 MGP_AJ_G0010407.1 mouse_genomes_project 1 161135975 161137249 - processed_pseudogene processed_pseudogene MGP_AJ_T0011978.1 MGP_AJ_G0010073.1 mouse_genomes_project 1 36978925 36979480 + processed_pseudogene processed_pseudogene MGP_AJ_T0022399.1 MGP_AJ_G0016530.1 mouse_genomes_project 1 136987019 137064919 - MGP_AJ_P0022399 Nek7 protein_coding protein_coding MGP_AJ_T0022400.1 MGP_AJ_G0016530.1 mouse_genomes_project 1 137018604 137124591 - Nek7 protein_coding retained_intron MGP_AJ_T0022774.1 MGP_AJ_G0016602.1 mouse_genomes_project 1 154720471 154768704 - MGP_AJ_P0022774 Tdrd5 protein_coding protein_coding MGP_AJ_T0022775.1 MGP_AJ_G0016602.1 mouse_genomes_project 1 154720473 154768388 - MGP_AJ_P0022775 Tdrd5 protein_coding protein_coding MGP_AJ_T0022776.1 MGP_AJ_G0016602.1 mouse_genomes_project 1 154725193 154728961 - Tdrd5 protein_coding processed_transcript MGP_AJ_T0022777.1 MGP_AJ_G0016602.1 mouse_genomes_project 1 154732467 154739709 - Tdrd5 protein_coding retained_intron MGP_AJ_T0022778.1 MGP_AJ_G0016602.1 mouse_genomes_project 1 154759460 154768646 - MGP_AJ_P0022778 Tdrd5 protein_coding protein_coding MGP_AJ_T0023357.1 MGP_AJ_G0016725.1 mouse_genomes_project 1 169795444 169800316 + MGP_AJ_P0023357 Nr1i3 protein_coding protein_coding MGP_AJ_T0023358.1 MGP_AJ_G0016725.1 mouse_genomes_project 1 169795445 169800314 + MGP_AJ_P0023358 Nr1i3 protein_coding protein_coding MGP_AJ_T0023359.1 MGP_AJ_G0016725.1 mouse_genomes_project 1 169795460 169802171 + MGP_AJ_P0023359 Nr1i3 protein_coding protein_coding MGP_AJ_T0023360.1 MGP_AJ_G0016725.1 mouse_genomes_project 1 169795468 169800472 + Nr1i3 protein_coding retained_intron MGP_AJ_T0023361.1 MGP_AJ_G0016725.1 mouse_genomes_project 1 169795476 169800316 + MGP_AJ_P0023361 Nr1i3 protein_coding nonsense_mediated_decay MGP_AJ_T0023362.1 MGP_AJ_G0016725.1 mouse_genomes_project 1 169795495 169800664 + Nr1i3 protein_coding retained_intron MGP_AJ_T0023363.1 MGP_AJ_G0016725.1 mouse_genomes_project 1 169795495 169800315 + MGP_AJ_P0023363 Nr1i3 protein_coding protein_coding MGP_AJ_T0023364.1 MGP_AJ_G0016725.1 mouse_genomes_project 1 169795826 169800196 + Nr1i3 protein_coding retained_intron MGP_AJ_T0019046.1 MGP_AJ_G0015853.1 mouse_genomes_project 1 18210022 18227521 - MGP_AJ_P0019046 Mcm3 protein_coding protein_coding MGP_AJ_T0019047.1 MGP_AJ_G0015853.1 mouse_genomes_project 1 18210027 18227469 - Mcm3 protein_coding retained_intron MGP_AJ_T0019048.1 MGP_AJ_G0015853.1 mouse_genomes_project 1 18210060 18210775 - Mcm3 protein_coding retained_intron MGP_AJ_T0019049.1 MGP_AJ_G0015853.1 mouse_genomes_project 1 18210219 18211971 - Mcm3 protein_coding retained_intron MGP_AJ_T0019050.1 MGP_AJ_G0015853.1 mouse_genomes_project 1 18211734 18212978 - Mcm3 protein_coding retained_intron MGP_AJ_T0005795.1 MGP_AJ_G0004859.1 mouse_genomes_project 1 74353785 74456362 + Gm29069 lincRNA lincRNA MGP_AJ_T0020597.1 MGP_AJ_G0016155.1 mouse_genomes_project 1 73063563 73068680 + MGP_AJ_P0020597 Fam134a protein_coding nonsense_mediated_decay MGP_AJ_T0020598.1 MGP_AJ_G0016155.1 mouse_genomes_project 1 73063571 73068684 + MGP_AJ_P0020598 Fam134a protein_coding protein_coding MGP_AJ_T0020599.1 MGP_AJ_G0016155.1 mouse_genomes_project 1 73063579 73068680 + MGP_AJ_P0020599 Fam134a protein_coding protein_coding MGP_AJ_T0020600.1 MGP_AJ_G0016155.1 mouse_genomes_project 1 73063765 73065435 + MGP_AJ_P0020600 Fam134a protein_coding protein_coding MGP_AJ_T0020601.1 MGP_AJ_G0016155.1 mouse_genomes_project 1 73063950 73068678 + MGP_AJ_P0020601 Fam134a protein_coding protein_coding MGP_AJ_T0020602.1 MGP_AJ_G0016155.1 mouse_genomes_project 1 73063967 73065148 + MGP_AJ_P0020602 Fam134a protein_coding protein_coding MGP_AJ_T0020603.1 MGP_AJ_G0016155.1 mouse_genomes_project 1 73064163 73064880 + Fam134a protein_coding retained_intron MGP_AJ_T0020604.1 MGP_AJ_G0016155.1 mouse_genomes_project 1 73066074 73066532 + MGP_AJ_P0020604 Fam134a protein_coding protein_coding MGP_AJ_T0018952.1 MGP_AJ_G0015829.1 mouse_genomes_project 1 12199246 12247621 - MGP_AJ_P0018952 Trpa1 protein_coding protein_coding MGP_AJ_T0012139.1 MGP_AJ_G0010234.1 mouse_genomes_project 1 89362828 89363548 - processed_pseudogene processed_pseudogene MGP_AJ_T0021249.1 MGP_AJ_G0016281.1 mouse_genomes_project 1 89189675 89304012 + MGP_AJ_P0021249 Lrrfip1 protein_coding protein_coding MGP_AJ_T0021250.1 MGP_AJ_G0016281.1 mouse_genomes_project 1 89189715 89318058 + MGP_AJ_P0021250 Lrrfip1 protein_coding protein_coding MGP_AJ_T0021251.1 MGP_AJ_G0016281.1 mouse_genomes_project 1 89189717 89324484 + MGP_AJ_P0021251 Lrrfip1 protein_coding protein_coding MGP_AJ_T0021252.1 MGP_AJ_G0016281.1 mouse_genomes_project 1 89248246 89324488 + MGP_AJ_P0021252 Lrrfip1 protein_coding protein_coding MGP_AJ_T0021253.1 MGP_AJ_G0016281.1 mouse_genomes_project 1 89248256 89312834 + MGP_AJ_P0021253 Lrrfip1 protein_coding protein_coding MGP_AJ_T0021254.1 MGP_AJ_G0016281.1 mouse_genomes_project 1 89248309 89324462 + MGP_AJ_P0021254 Lrrfip1 protein_coding protein_coding MGP_AJ_T0021255.1 MGP_AJ_G0016281.1 mouse_genomes_project 1 89248309 89295887 + MGP_AJ_P0021255 Lrrfip1 protein_coding protein_coding MGP_AJ_T0021256.1 MGP_AJ_G0016281.1 mouse_genomes_project 1 89248388 89323831 + MGP_AJ_P0021256 Lrrfip1 protein_coding protein_coding MGP_AJ_T0021257.1 MGP_AJ_G0016281.1 mouse_genomes_project 1 89306677 89312440 + Lrrfip1 protein_coding processed_transcript MGP_AJ_T0021258.1 MGP_AJ_G0016281.1 mouse_genomes_project 1 89306696 89310371 + Lrrfip1 protein_coding processed_transcript MGP_AJ_T0021259.1 MGP_AJ_G0016281.1 mouse_genomes_project 1 89315478 89318044 + Lrrfip1 protein_coding processed_transcript MGP_AJ_T0021260.1 MGP_AJ_G0016281.1 mouse_genomes_project 1 89320898 89323722 + Lrrfip1 protein_coding retained_intron MGP_AJ_T0000369.1 MGP_AJ_G0000313.1 mouse_genomes_project 1 7774710 7777455 - TEC TEC MGP_AJ_T0021410.1 MGP_AJ_G0016315.1 mouse_genomes_project 1 91350465 91360643 + MGP_AJ_P0021410 Agxt protein_coding protein_coding MGP_AJ_T0021411.1 MGP_AJ_G0016315.1 mouse_genomes_project 1 91350793 91353230 + Agxt protein_coding retained_intron MGP_AJ_T0021412.1 MGP_AJ_G0016315.1 mouse_genomes_project 1 91355100 91360639 + Agxt protein_coding processed_transcript MGP_AJ_T0102157.1 MGP_AJ_G0039900.1 mouse_genomes_project 1 85100679 85103650 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0006058.1 MGP_AJ_G0005070.1 mouse_genomes_project 1 190341120 190370164 - Gm32200 lincRNA lincRNA MGP_AJ_T0018830.1 MGP_AJ_G0015811.1 mouse_genomes_project 1 7226713 7261726 + MGP_AJ_P0018830 Mcmdc2 protein_coding protein_coding MGP_AJ_T0018831.1 MGP_AJ_G0015811.1 mouse_genomes_project 1 7226713 7240606 + MGP_AJ_P0018831 Mcmdc2 protein_coding protein_coding MGP_AJ_T0018832.1 MGP_AJ_G0015811.1 mouse_genomes_project 1 7226743 7261226 + MGP_AJ_P0018832 Mcmdc2 protein_coding protein_coding MGP_AJ_T0018833.1 MGP_AJ_G0015811.1 mouse_genomes_project 1 7226745 7262856 + MGP_AJ_P0018833 Mcmdc2 protein_coding protein_coding MGP_AJ_T0018834.1 MGP_AJ_G0015811.1 mouse_genomes_project 1 7229407 7239347 + MGP_AJ_P0018834 Mcmdc2 protein_coding protein_coding MGP_AJ_T0018835.1 MGP_AJ_G0015811.1 mouse_genomes_project 1 7252373 7261726 + MGP_AJ_P0018835 Mcmdc2 protein_coding nonsense_mediated_decay MGP_AJ_T0012096.1 MGP_AJ_G0010191.1 mouse_genomes_project 1 69384461 69384539 - processed_pseudogene processed_pseudogene MGP_AJ_T0023162.1 MGP_AJ_G0016676.1 mouse_genomes_project 1 164100281 164143224 - MGP_AJ_P0023162 Mpzl1 protein_coding protein_coding MGP_AJ_T0023163.1 MGP_AJ_G0016676.1 mouse_genomes_project 1 164101419 164113119 - MGP_AJ_P0023163 Mpzl1 protein_coding protein_coding MGP_AJ_T0023164.1 MGP_AJ_G0016676.1 mouse_genomes_project 1 164101458 164143266 - MGP_AJ_P0023164 Mpzl1 protein_coding protein_coding MGP_AJ_T0023165.1 MGP_AJ_G0016676.1 mouse_genomes_project 1 164109140 164117940 - Mpzl1 protein_coding processed_transcript MGP_AJ_T0023166.1 MGP_AJ_G0016676.1 mouse_genomes_project 1 164111551 164113075 - Mpzl1 protein_coding retained_intron MGP_AJ_T0023167.1 MGP_AJ_G0016676.1 mouse_genomes_project 1 164112965 164121686 - Mpzl1 protein_coding processed_transcript MGP_AJ_T0023168.1 MGP_AJ_G0016676.1 mouse_genomes_project 1 164113033 164143195 - MGP_AJ_P0023168 Mpzl1 protein_coding nonsense_mediated_decay MGP_AJ_T0023169.1 MGP_AJ_G0016676.1 mouse_genomes_project 1 164115759 164142839 - Mpzl1 protein_coding processed_transcript MGP_AJ_T0009565.1 MGP_AJ_G0007687.1 mouse_genomes_project 1 189377823 189377911 - miRNA miRNA MGP_AJ_T0012011.1 MGP_AJ_G0010106.1 mouse_genomes_project 1 46493526 46495322 - processed_pseudogene processed_pseudogene MGP_AJ_T0012075.1 MGP_AJ_G0010170.1 mouse_genomes_project 1 62056464 62057694 + processed_pseudogene processed_pseudogene MGP_AJ_T0000603.1 MGP_AJ_G0000544.1 mouse_genomes_project 1 124285501 124288198 - TEC TEC MGP_AJ_T0009509.1 MGP_AJ_G0007631.1 mouse_genomes_project 1 80795528 80795581 + Gm22396 miRNA miRNA MGP_AJ_T0005802.1 MGP_AJ_G0004865.1 mouse_genomes_project 1 76577089 76581710 + Gm29611 lincRNA lincRNA MGP_AJ_T0000457.1 MGP_AJ_G0000398.1 mouse_genomes_project 1 40365506 40366182 + TEC TEC MGP_AJ_T0098514.1 MGP_AJ_G0036498.1 mouse_genomes_project 1 148072134 148072243 - n-R5s218 rRNA rRNA MGP_AJ_T0011249.1 MGP_AJ_G0009371.1 mouse_genomes_project 1 71363674 71363828 + Gm27315 misc_RNA misc_RNA MGP_AJ_T0012079.1 MGP_AJ_G0010174.1 mouse_genomes_project 1 62889603 62890245 - processed_pseudogene processed_pseudogene MGP_AJ_T0020845.1 MGP_AJ_G0016192.1 mouse_genomes_project 1 78146359 78161558 - MGP_AJ_P0020845 Fam124b protein_coding protein_coding MGP_AJ_T0020846.1 MGP_AJ_G0016192.1 mouse_genomes_project 1 78147979 78166102 - Fam124b protein_coding processed_transcript MGP_AJ_T0019089.1 MGP_AJ_G0015866.1 mouse_genomes_project 1 21162710 21213916 + MGP_AJ_P0019089 B3gat2 protein_coding protein_coding MGP_AJ_T0019090.1 MGP_AJ_G0015866.1 mouse_genomes_project 1 21163334 21244245 + MGP_AJ_P0019090 B3gat2 protein_coding protein_coding MGP_AJ_T0019891.1 MGP_AJ_G0016023.1 mouse_genomes_project 1 55210832 55229691 - MGP_AJ_P0019891 Tyw5 protein_coding protein_coding MGP_AJ_T0019892.1 MGP_AJ_G0016023.1 mouse_genomes_project 1 55210835 55229061 - Tyw5 protein_coding retained_intron MGP_AJ_T0019893.1 MGP_AJ_G0016023.1 mouse_genomes_project 1 55210835 55229264 - MGP_AJ_P0019893 Tyw5 protein_coding nonsense_mediated_decay MGP_AJ_T0019894.1 MGP_AJ_G0016023.1 mouse_genomes_project 1 55211000 55213367 - Tyw5 protein_coding processed_transcript MGP_AJ_T0019895.1 MGP_AJ_G0016023.1 mouse_genomes_project 1 55211011 55216294 - Tyw5 protein_coding retained_intron MGP_AJ_T0019896.1 MGP_AJ_G0016023.1 mouse_genomes_project 1 55211261 55229033 - MGP_AJ_P0019896 Tyw5 protein_coding protein_coding MGP_AJ_T0019897.1 MGP_AJ_G0016023.1 mouse_genomes_project 1 55211281 55214336 - Tyw5 protein_coding retained_intron MGP_AJ_T0019898.1 MGP_AJ_G0016023.1 mouse_genomes_project 1 55213307 55224107 - Tyw5 protein_coding processed_transcript MGP_AJ_T0019899.1 MGP_AJ_G0016023.1 mouse_genomes_project 1 55214024 55229061 - MGP_AJ_P0019899 Tyw5 protein_coding nonsense_mediated_decay MGP_AJ_T0019900.1 MGP_AJ_G0016023.1 mouse_genomes_project 1 55215780 55229127 - Tyw5 protein_coding retained_intron MGP_AJ_T0020322.1 MGP_AJ_G0016098.1 mouse_genomes_project 1 64610479 64688984 - MGP_AJ_P0020322 Kansl1l protein_coding protein_coding MGP_AJ_T0020323.1 MGP_AJ_G0016098.1 mouse_genomes_project 1 64612004 64705276 - MGP_AJ_P0020323 Kansl1l protein_coding unknown_likely_coding MGP_AJ_T0020324.1 MGP_AJ_G0016098.1 mouse_genomes_project 1 64626775 64705283 - MGP_AJ_P0020324 Kansl1l protein_coding protein_coding MGP_AJ_T0020325.1 MGP_AJ_G0016098.1 mouse_genomes_project 1 64668743 64696549 - Kansl1l protein_coding processed_transcript MGP_AJ_T0020326.1 MGP_AJ_G0016098.1 mouse_genomes_project 1 64688515 64705267 - Kansl1l protein_coding retained_intron MGP_AJ_T0023283.1 MGP_AJ_G0016704.1 mouse_genomes_project 1 168476120 168614960 - MGP_AJ_P0023283 Ddr2 protein_coding protein_coding MGP_AJ_T0023284.1 MGP_AJ_G0016704.1 mouse_genomes_project 1 168476121 168593798 - MGP_AJ_P0023284 Ddr2 protein_coding protein_coding MGP_AJ_T0023285.1 MGP_AJ_G0016704.1 mouse_genomes_project 1 168481765 168614900 - MGP_AJ_P0023285 Ddr2 protein_coding protein_coding MGP_AJ_T0023286.1 MGP_AJ_G0016704.1 mouse_genomes_project 1 168509451 168615128 - MGP_AJ_P0023286 Ddr2 protein_coding protein_coding MGP_AJ_T0023287.1 MGP_AJ_G0016704.1 mouse_genomes_project 1 168541101 168615161 - Ddr2 protein_coding retained_intron MGP_AJ_T0023288.1 MGP_AJ_G0016704.1 mouse_genomes_project 1 168588521 168602164 - Ddr2 protein_coding processed_transcript MGP_AJ_T0005669.1 MGP_AJ_G0004771.1 mouse_genomes_project 1 28242843 28244247 - Gm9898 lincRNA lincRNA MGP_AJ_T0000385.1 MGP_AJ_G0000329.1 mouse_genomes_project 1 12108440 12112761 + TEC TEC MGP_AJ_T0022489.1 MGP_AJ_G0016550.1 mouse_genomes_project 1 142676418 142683364 - MGP_AJ_P0022489 Rgs1 protein_coding protein_coding MGP_AJ_T0022490.1 MGP_AJ_G0016550.1 mouse_genomes_project 1 142677335 142683178 - Rgs1 protein_coding retained_intron MGP_AJ_T0022491.1 MGP_AJ_G0016550.1 mouse_genomes_project 1 142678094 142683182 - MGP_AJ_P0022491 Rgs1 protein_coding nonsense_mediated_decay MGP_AJ_T0022492.1 MGP_AJ_G0016550.1 mouse_genomes_project 1 142678717 142683182 - MGP_AJ_P0022492 Rgs1 protein_coding nonsense_mediated_decay MGP_AJ_T0022493.1 MGP_AJ_G0016550.1 mouse_genomes_project 1 142678794 142683150 - MGP_AJ_P0022493 Rgs1 protein_coding nonsense_mediated_decay MGP_AJ_T0022494.1 MGP_AJ_G0016550.1 mouse_genomes_project 1 142678794 142683180 - MGP_AJ_P0022494 Rgs1 protein_coding nonsense_mediated_decay MGP_AJ_T0022495.1 MGP_AJ_G0016550.1 mouse_genomes_project 1 142679584 142683181 - MGP_AJ_P0022495 Rgs1 protein_coding protein_coding MGP_AJ_T0022496.1 MGP_AJ_G0016550.1 mouse_genomes_project 1 142681914 142683180 - Rgs1 protein_coding retained_intron MGP_AJ_T0022497.1 MGP_AJ_G0016550.1 mouse_genomes_project 1 142681917 142683183 - Rgs1 protein_coding retained_intron MGP_AJ_T0011967.1 MGP_AJ_G0010062.1 mouse_genomes_project 1 32522413 32524554 + processed_pseudogene processed_pseudogene MGP_AJ_T0002860.1 MGP_AJ_G0002702.1 mouse_genomes_project 1 95142578 95179301 + Panct2 antisense antisense MGP_AJ_T0002861.1 MGP_AJ_G0002702.1 mouse_genomes_project 1 95143673 95152817 + Panct2 antisense antisense MGP_AJ_T0002862.1 MGP_AJ_G0002702.1 mouse_genomes_project 1 95143685 95149366 + Panct2 antisense antisense MGP_AJ_T0002767.1 MGP_AJ_G0002628.1 mouse_genomes_project 1 17761693 17799357 + 4930486I03Rik antisense antisense MGP_AJ_T0012167.1 MGP_AJ_G0010262.1 mouse_genomes_project 1 102835005 102835481 - processed_pseudogene processed_pseudogene MGP_AJ_T0023791.1 MGP_AJ_G0016841.1 mouse_genomes_project 1 178568351 178619159 - MGP_AJ_P0023791 Gm1305 protein_coding protein_coding MGP_AJ_T0000589.1 MGP_AJ_G0000530.1 mouse_genomes_project 1 119666792 119667460 - TEC TEC MGP_AJ_T0021385.1 MGP_AJ_G0016311.1 mouse_genomes_project 1 91154361 91167893 + MGP_AJ_P0021385 Capn10 protein_coding protein_coding MGP_AJ_T0021386.1 MGP_AJ_G0016311.1 mouse_genomes_project 1 91154751 91160956 + MGP_AJ_P0021386 Capn10 protein_coding protein_coding MGP_AJ_T0021387.1 MGP_AJ_G0016311.1 mouse_genomes_project 1 91154818 91167881 + MGP_AJ_P0021387 Capn10 protein_coding nonsense_mediated_decay MGP_AJ_T0021388.1 MGP_AJ_G0016311.1 mouse_genomes_project 1 91160442 91165055 + MGP_AJ_P0021388 Capn10 protein_coding nonsense_mediated_decay MGP_AJ_T0021389.1 MGP_AJ_G0016311.1 mouse_genomes_project 1 91162655 91163696 + Capn10 protein_coding retained_intron MGP_AJ_T0021390.1 MGP_AJ_G0016311.1 mouse_genomes_project 1 91166504 91166907 + Capn10 protein_coding processed_transcript MGP_AJ_T0021391.1 MGP_AJ_G0016311.1 mouse_genomes_project 1 91166836 91167542 + Capn10 protein_coding retained_intron MGP_AJ_T0019051.1 MGP_AJ_G0015854.1 mouse_genomes_project 1 18300900 18348535 + MGP_AJ_P0019051 Paqr8 protein_coding protein_coding MGP_AJ_T0019052.1 MGP_AJ_G0015854.1 mouse_genomes_project 1 18327819 18347938 + MGP_AJ_P0019052 Paqr8 protein_coding protein_coding MGP_AJ_T0019053.1 MGP_AJ_G0015854.1 mouse_genomes_project 1 18327853 18344635 + MGP_AJ_P0019053 Paqr8 protein_coding protein_coding MGP_AJ_T0019054.1 MGP_AJ_G0015854.1 mouse_genomes_project 1 18331875 18344642 + MGP_AJ_P0019054 Paqr8 protein_coding protein_coding MGP_AJ_T0006020.1 MGP_AJ_G0005041.1 mouse_genomes_project 1 182208377 182211950 - lincRNA lincRNA MGP_AJ_T0000718.1 MGP_AJ_G0000657.1 mouse_genomes_project 1 159484925 159485758 - TEC TEC MGP_AJ_T0006024.1 MGP_AJ_G0005045.1 mouse_genomes_project 1 182778732 182779558 + Gm38108 lincRNA lincRNA MGP_AJ_T0020462.1 MGP_AJ_G0016129.1 mouse_genomes_project 1 72252443 72254968 + MGP_AJ_P0020462 Pnkd protein_coding protein_coding MGP_AJ_T0020463.1 MGP_AJ_G0016129.1 mouse_genomes_project 1 72252558 72324776 + MGP_AJ_P0020463 Pnkd protein_coding protein_coding MGP_AJ_T0020464.1 MGP_AJ_G0016129.1 mouse_genomes_project 1 72252563 72254148 + Pnkd protein_coding retained_intron MGP_AJ_T0020465.1 MGP_AJ_G0016129.1 mouse_genomes_project 1 72252567 72318597 + Pnkd protein_coding retained_intron MGP_AJ_T0020466.1 MGP_AJ_G0016129.1 mouse_genomes_project 1 72252568 72324786 + MGP_AJ_P0020466 Pnkd protein_coding protein_coding MGP_AJ_T0020467.1 MGP_AJ_G0016129.1 mouse_genomes_project 1 72253290 72254787 + Pnkd protein_coding retained_intron MGP_AJ_T0020476.1 MGP_AJ_G0016129.1 mouse_genomes_project 1 72300056 72324778 + MGP_AJ_P0020476 Pnkd protein_coding protein_coding MGP_AJ_T0020477.1 MGP_AJ_G0016129.1 mouse_genomes_project 1 72300109 72303707 + Pnkd protein_coding retained_intron MGP_AJ_T0011910.1 MGP_AJ_G0010005.1 mouse_genomes_project 1 18228539 18229725 + processed_pseudogene processed_pseudogene MGP_AJ_T0019068.1 MGP_AJ_G0015862.1 mouse_genomes_project 1 18831029 19406278 - MGP_AJ_P0019068 Kcnq5 protein_coding protein_coding MGP_AJ_T0019069.1 MGP_AJ_G0015862.1 mouse_genomes_project 1 18831034 19406639 - MGP_AJ_P0019069 Kcnq5 protein_coding protein_coding MGP_AJ_T0019070.1 MGP_AJ_G0015862.1 mouse_genomes_project 1 18834778 19406278 - MGP_AJ_P0019070 Kcnq5 protein_coding protein_coding MGP_AJ_T0019071.1 MGP_AJ_G0015862.1 mouse_genomes_project 1 18834778 19406278 - MGP_AJ_P0019071 Kcnq5 protein_coding protein_coding MGP_AJ_T0019072.1 MGP_AJ_G0015862.1 mouse_genomes_project 1 18834778 19406278 - MGP_AJ_P0019072 Kcnq5 protein_coding nonsense_mediated_decay MGP_AJ_T0019073.1 MGP_AJ_G0015862.1 mouse_genomes_project 1 18901725 19406362 - Kcnq5 protein_coding retained_intron MGP_AJ_T0019074.1 MGP_AJ_G0015862.1 mouse_genomes_project 1 19019583 19293846 - Kcnq5 protein_coding processed_transcript MGP_AJ_T0100407.1 MGP_AJ_G0038373.1 mouse_genomes_project 1 16362195 16362267 - Gm24075 snoRNA snoRNA MGP_AJ_T0000436.1 MGP_AJ_G0000377.1 mouse_genomes_project 1 31527675 31529999 + TEC TEC MGP_AJ_T0012173.1 MGP_AJ_G0010268.1 mouse_genomes_project 1 104124119 104124349 + processed_pseudogene processed_pseudogene MGP_AJ_T0012340.1 MGP_AJ_G0010435.1 mouse_genomes_project 1 175608265 175608594 + processed_pseudogene processed_pseudogene MGP_AJ_T0005910.1 MGP_AJ_G0004955.1 mouse_genomes_project 1 133115394 133119643 - Gm26783 lincRNA lincRNA MGP_AJ_T0019057.1 MGP_AJ_G0015856.1 mouse_genomes_project 1 18404569 18485308 - MGP_AJ_P0019057 Tram2 protein_coding protein_coding MGP_AJ_T0019058.1 MGP_AJ_G0015856.1 mouse_genomes_project 1 18412583 18449735 - Tram2 protein_coding processed_transcript MGP_AJ_T0019945.1 MGP_AJ_G0016033.1 mouse_genomes_project 1 56233216 56246892 - Clk1 protein_coding retained_intron MGP_AJ_T0019946.1 MGP_AJ_G0016033.1 mouse_genomes_project 1 56235027 56235889 - Clk1 protein_coding processed_transcript MGP_AJ_T0019947.1 MGP_AJ_G0016033.1 mouse_genomes_project 1 56235027 56236465 - Clk1 protein_coding processed_transcript MGP_AJ_T0019948.1 MGP_AJ_G0016033.1 mouse_genomes_project 1 56235027 56239793 - Clk1 protein_coding retained_intron MGP_AJ_T0019949.1 MGP_AJ_G0016033.1 mouse_genomes_project 1 56235027 56246892 - MGP_AJ_P0019949 Clk1 protein_coding protein_coding MGP_AJ_T0019950.1 MGP_AJ_G0016033.1 mouse_genomes_project 1 56235027 56246892 - MGP_AJ_P0019950 Clk1 protein_coding nonsense_mediated_decay MGP_AJ_T0019951.1 MGP_AJ_G0016033.1 mouse_genomes_project 1 56235027 56246892 - MGP_AJ_P0019951 Clk1 protein_coding nonsense_mediated_decay MGP_AJ_T0019952.1 MGP_AJ_G0016033.1 mouse_genomes_project 1 56235343 56236853 - Clk1 protein_coding processed_transcript MGP_AJ_T0019953.1 MGP_AJ_G0016033.1 mouse_genomes_project 1 56237617 56243390 - Clk1 protein_coding retained_intron MGP_AJ_T0019954.1 MGP_AJ_G0016033.1 mouse_genomes_project 1 56237642 56244250 - Clk1 protein_coding retained_intron MGP_AJ_T0019955.1 MGP_AJ_G0016033.1 mouse_genomes_project 1 56239170 56246892 - Clk1 protein_coding retained_intron MGP_AJ_T0019956.1 MGP_AJ_G0016033.1 mouse_genomes_project 1 56239937 56240454 - Clk1 protein_coding retained_intron MGP_AJ_T0019957.1 MGP_AJ_G0016033.1 mouse_genomes_project 1 56244617 56246892 - Clk1 protein_coding retained_intron MGP_AJ_T0019643.1 MGP_AJ_G0015975.1 mouse_genomes_project 1 42251409 42491457 + MGP_AJ_P0019643 Gulp1 protein_coding protein_coding MGP_AJ_T0019644.1 MGP_AJ_G0015975.1 mouse_genomes_project 1 42251591 42483524 + MGP_AJ_P0019644 Gulp1 protein_coding protein_coding MGP_AJ_T0019645.1 MGP_AJ_G0015975.1 mouse_genomes_project 1 42251591 42491445 + MGP_AJ_P0019645 Gulp1 protein_coding nonsense_mediated_decay MGP_AJ_T0019646.1 MGP_AJ_G0015975.1 mouse_genomes_project 1 42251625 42483117 + Gulp1 protein_coding processed_transcript MGP_AJ_T0019647.1 MGP_AJ_G0015975.1 mouse_genomes_project 1 42252491 42405087 + MGP_AJ_P0019647 Gulp1 protein_coding protein_coding MGP_AJ_T0019648.1 MGP_AJ_G0015975.1 mouse_genomes_project 1 42391878 42491444 + MGP_AJ_P0019648 Gulp1 protein_coding protein_coding MGP_AJ_T0021638.1 MGP_AJ_G0016366.1 mouse_genomes_project 1 109204530 109288912 - MGP_AJ_P0021638 Cdh19 protein_coding protein_coding MGP_AJ_T0021639.1 MGP_AJ_G0016366.1 mouse_genomes_project 1 109261686 109289135 - Cdh19 protein_coding processed_transcript MGP_AJ_T0021357.1 MGP_AJ_G0016305.1 mouse_genomes_project 1 90853518 90856283 - protein_coding retained_intron MGP_AJ_T0021358.1 MGP_AJ_G0016305.1 mouse_genomes_project 1 90853518 90858297 - MGP_AJ_P0021358 protein_coding nonsense_mediated_decay MGP_AJ_T0021359.1 MGP_AJ_G0016305.1 mouse_genomes_project 1 90853518 90858359 - MGP_AJ_P0021359 protein_coding protein_coding MGP_AJ_T0021360.1 MGP_AJ_G0016305.1 mouse_genomes_project 1 90853518 90856938 - MGP_AJ_P0021360 protein_coding protein_coding MGP_AJ_T0021361.1 MGP_AJ_G0016305.1 mouse_genomes_project 1 90855743 90858359 - protein_coding retained_intron MGP_AJ_T0023088.1 MGP_AJ_G0016657.1 mouse_genomes_project 1 162502296 162504676 + MGP_AJ_P0023088 Mettl18 protein_coding protein_coding MGP_AJ_T0023089.1 MGP_AJ_G0016657.1 mouse_genomes_project 1 162502296 162504676 + MGP_AJ_P0023089 Mettl18 protein_coding protein_coding MGP_AJ_T0022593.1 MGP_AJ_G0016567.1 mouse_genomes_project 1 150282870 150525180 - MGP_AJ_P0022593 1700025G04Rik protein_coding nonsense_mediated_decay MGP_AJ_T0022594.1 MGP_AJ_G0016567.1 mouse_genomes_project 1 150316017 150525335 - MGP_AJ_P0022594 1700025G04Rik protein_coding protein_coding MGP_AJ_T0022595.1 MGP_AJ_G0016567.1 mouse_genomes_project 1 150324423 150352283 - 1700025G04Rik protein_coding retained_intron MGP_AJ_T0022596.1 MGP_AJ_G0016567.1 mouse_genomes_project 1 150324760 150487089 - MGP_AJ_P0022596 1700025G04Rik protein_coding nonsense_mediated_decay MGP_AJ_T0005934.1 MGP_AJ_G0004974.1 mouse_genomes_project 1 147461164 147482272 + Gm29020 lincRNA lincRNA MGP_AJ_T0002781.1 MGP_AJ_G0002640.1 mouse_genomes_project 1 35507074 35513203 + Gm26805 antisense antisense MGP_AJ_T0012243.1 MGP_AJ_G0010338.1 mouse_genomes_project 1 132574758 132575535 + processed_pseudogene processed_pseudogene MGP_AJ_T0005970.1 MGP_AJ_G0005001.1 mouse_genomes_project 1 162976032 162977580 + Gm32391 lincRNA lincRNA MGP_AJ_T0006002.1 MGP_AJ_G0005029.1 mouse_genomes_project 1 179078871 179088926 - Gm37336 lincRNA lincRNA MGP_AJ_T0006003.1 MGP_AJ_G0005029.1 mouse_genomes_project 1 179088523 179088991 - Gm37336 lincRNA lincRNA MGP_AJ_T0098505.1 MGP_AJ_G0036489.1 mouse_genomes_project 1 81196293 81196414 - n-R5s214 rRNA rRNA MGP_AJ_T0000723.1 MGP_AJ_G0000662.1 mouse_genomes_project 1 161817166 161819440 - TEC TEC MGP_AJ_T0023785.1 MGP_AJ_G0016840.1 mouse_genomes_project 1 178545150 178563921 + MGP_AJ_P0023785 Sccpdh protein_coding protein_coding MGP_AJ_T0023786.1 MGP_AJ_G0016840.1 mouse_genomes_project 1 178545150 178563921 + MGP_AJ_P0023786 Sccpdh protein_coding nonsense_mediated_decay MGP_AJ_T0023787.1 MGP_AJ_G0016840.1 mouse_genomes_project 1 178545200 178554469 + Sccpdh protein_coding retained_intron MGP_AJ_T0023788.1 MGP_AJ_G0016840.1 mouse_genomes_project 1 178557475 178563557 + MGP_AJ_P0023788 Sccpdh protein_coding protein_coding MGP_AJ_T0023789.1 MGP_AJ_G0016840.1 mouse_genomes_project 1 178557504 178561222 + MGP_AJ_P0023789 Sccpdh protein_coding protein_coding MGP_AJ_T0023790.1 MGP_AJ_G0016840.1 mouse_genomes_project 1 178560575 178563565 + Sccpdh protein_coding retained_intron MGP_AJ_T0012275.1 MGP_AJ_G0010370.1 mouse_genomes_project 1 147291767 147291992 - processed_pseudogene processed_pseudogene MGP_AJ_T0005841.1 MGP_AJ_G0004899.1 mouse_genomes_project 1 90533955 90539487 + Gm29099 lincRNA lincRNA MGP_AJ_T0023641.1 MGP_AJ_G0016797.1 mouse_genomes_project 1 172704769 172728213 - MGP_AJ_P0023641 Ifi202b protein_coding protein_coding MGP_AJ_T0021931.1 MGP_AJ_G0016432.1 mouse_genomes_project 1 129567680 129579277 - MGP_AJ_P0021931 Dyrk3 protein_coding protein_coding MGP_AJ_T0021932.1 MGP_AJ_G0016432.1 mouse_genomes_project 1 129570100 129579182 - MGP_AJ_P0021932 Dyrk3 protein_coding protein_coding MGP_AJ_T0012359.1 MGP_AJ_G0010454.1 mouse_genomes_project 1 182524105 182524456 - processed_pseudogene processed_pseudogene MGP_AJ_T0020864.1 MGP_AJ_G0016195.1 mouse_genomes_project 1 79035724 79267385 + MGP_AJ_P0020864 Nyap2 protein_coding protein_coding MGP_AJ_T0020865.1 MGP_AJ_G0016195.1 mouse_genomes_project 1 79035975 79267360 + MGP_AJ_P0020865 Nyap2 protein_coding protein_coding MGP_AJ_T0020866.1 MGP_AJ_G0016195.1 mouse_genomes_project 1 79036077 79236834 + MGP_AJ_P0020866 Nyap2 protein_coding protein_coding MGP_AJ_T0020867.1 MGP_AJ_G0016195.1 mouse_genomes_project 1 79036084 79268547 + MGP_AJ_P0020867 Nyap2 protein_coding protein_coding MGP_AJ_T0020868.1 MGP_AJ_G0016195.1 mouse_genomes_project 1 79036343 79311114 + MGP_AJ_P0020868 Nyap2 protein_coding protein_coding MGP_AJ_T0011852.1 MGP_AJ_G0009947.1 mouse_genomes_project 1 2196601 2198189 + processed_pseudogene processed_pseudogene MGP_AJ_T0002774.1 MGP_AJ_G0002634.1 mouse_genomes_project 1 32406064 32408613 - Gm38336 antisense antisense MGP_AJ_T0009479.1 MGP_AJ_G0007601.1 mouse_genomes_project 1 33729318 33729380 - Mir6897 miRNA miRNA MGP_AJ_T0020081.1 MGP_AJ_G0016053.1 mouse_genomes_project 1 57672406 57791036 + MGP_AJ_P0020081 Bmpr2 protein_coding protein_coding MGP_AJ_T0020082.1 MGP_AJ_G0016053.1 mouse_genomes_project 1 57762664 57764351 + Bmpr2 protein_coding retained_intron MGP_AJ_T0020083.1 MGP_AJ_G0016053.1 mouse_genomes_project 1 57763476 57768195 + Bmpr2 protein_coding retained_intron MGP_AJ_T0012054.1 MGP_AJ_G0010149.1 mouse_genomes_project 1 58517616 58519329 - processed_pseudogene processed_pseudogene MGP_AJ_T0019857.1 MGP_AJ_G0016014.1 mouse_genomes_project 1 52895800 52898976 + MGP_AJ_P0019857 Hspe1 protein_coding protein_coding MGP_AJ_T0019858.1 MGP_AJ_G0016014.1 mouse_genomes_project 1 52895982 52897584 + Hspe1 protein_coding retained_intron MGP_AJ_T0020730.1 MGP_AJ_G0016170.1 mouse_genomes_project 1 73359023 73366282 + MGP_AJ_P0020730 Gmppa protein_coding protein_coding MGP_AJ_T0020731.1 MGP_AJ_G0016170.1 mouse_genomes_project 1 73359036 73366281 + MGP_AJ_P0020731 Gmppa protein_coding protein_coding MGP_AJ_T0020732.1 MGP_AJ_G0016170.1 mouse_genomes_project 1 73359054 73361965 + MGP_AJ_P0020732 Gmppa protein_coding protein_coding MGP_AJ_T0020733.1 MGP_AJ_G0016170.1 mouse_genomes_project 1 73359060 73363610 + MGP_AJ_P0020733 Gmppa protein_coding protein_coding MGP_AJ_T0020734.1 MGP_AJ_G0016170.1 mouse_genomes_project 1 73359061 73364623 + MGP_AJ_P0020734 Gmppa protein_coding protein_coding MGP_AJ_T0020735.1 MGP_AJ_G0016170.1 mouse_genomes_project 1 73359075 73364717 + MGP_AJ_P0020735 Gmppa protein_coding protein_coding MGP_AJ_T0020736.1 MGP_AJ_G0016170.1 mouse_genomes_project 1 73359077 73362497 + MGP_AJ_P0020736 Gmppa protein_coding protein_coding MGP_AJ_T0020737.1 MGP_AJ_G0016170.1 mouse_genomes_project 1 73359180 73364632 + MGP_AJ_P0020737 Gmppa protein_coding protein_coding MGP_AJ_T0020738.1 MGP_AJ_G0016170.1 mouse_genomes_project 1 73359206 73361422 + MGP_AJ_P0020738 Gmppa protein_coding protein_coding MGP_AJ_T0020739.1 MGP_AJ_G0016170.1 mouse_genomes_project 1 73360035 73365136 + MGP_AJ_P0020739 Gmppa protein_coding nonsense_mediated_decay MGP_AJ_T0020740.1 MGP_AJ_G0016170.1 mouse_genomes_project 1 73364727 73366040 + Gmppa protein_coding retained_intron MGP_AJ_T0020741.1 MGP_AJ_G0016170.1 mouse_genomes_project 1 73365273 73366281 + Gmppa protein_coding retained_intron MGP_AJ_T0020742.1 MGP_AJ_G0016170.1 mouse_genomes_project 1 73365331 73366287 + Gmppa protein_coding retained_intron MGP_AJ_T0000483.1 MGP_AJ_G0000424.1 mouse_genomes_project 1 58274749 58275806 + TEC TEC MGP_AJ_T0002941.1 MGP_AJ_G0002761.1 mouse_genomes_project 1 164842967 164845812 - 5330438I03Rik antisense antisense MGP_AJ_T0100466.1 MGP_AJ_G0038432.1 mouse_genomes_project 1 136242561 136242677 + Gm22727 snoRNA snoRNA MGP_AJ_T0000768.1 MGP_AJ_G0000706.1 mouse_genomes_project 1 180866214 180869454 - TEC TEC MGP_AJ_T0019799.1 MGP_AJ_G0016002.1 mouse_genomes_project 1 51085074 51112437 - MGP_AJ_P0019799 Gm28551 protein_coding nonsense_mediated_decay MGP_AJ_T0023706.1 MGP_AJ_G0016822.1 mouse_genomes_project 1 174732706 175061414 - MGP_AJ_P0023706 Pld5 protein_coding protein_coding MGP_AJ_T0023707.1 MGP_AJ_G0016822.1 mouse_genomes_project 1 174732807 175061428 - MGP_AJ_P0023707 Pld5 protein_coding nonsense_mediated_decay MGP_AJ_T0023708.1 MGP_AJ_G0016822.1 mouse_genomes_project 1 174734110 174990060 - MGP_AJ_P0023708 Pld5 protein_coding protein_coding MGP_AJ_T0023710.1 MGP_AJ_G0016822.1 mouse_genomes_project 1 174762044 175061391 - Pld5 protein_coding retained_intron MGP_AJ_T0023711.1 MGP_AJ_G0016822.1 mouse_genomes_project 1 174813691 174989959 - Pld5 protein_coding retained_intron MGP_AJ_T0023712.1 MGP_AJ_G0016822.1 mouse_genomes_project 1 175046872 175061390 - MGP_AJ_P0023712 Pld5 protein_coding protein_coding MGP_AJ_T0023356.1 MGP_AJ_G0016724.1 mouse_genomes_project 1 169755076 169778102 - MGP_AJ_P0023356 Pcp4l1 protein_coding protein_coding MGP_AJ_T0021787.1 MGP_AJ_G0016398.1 mouse_genomes_project 1 123920452 123928474 + MGP_AJ_P0021787 Slc35f5 protein_coding protein_coding MGP_AJ_T0021788.1 MGP_AJ_G0016398.1 mouse_genomes_project 1 123920873 123956211 + MGP_AJ_P0021788 Slc35f5 protein_coding protein_coding MGP_AJ_T0021789.1 MGP_AJ_G0016398.1 mouse_genomes_project 1 123944907 123955544 + MGP_AJ_P0021789 Slc35f5 protein_coding nonsense_mediated_decay MGP_AJ_T0012196.1 MGP_AJ_G0010291.1 mouse_genomes_project 1 111154190 111156334 - processed_pseudogene processed_pseudogene MGP_AJ_T0019217.1 MGP_AJ_G0015891.1 mouse_genomes_project 1 32039654 32042620 - MGP_AJ_P0019217 Ccdc115 protein_coding protein_coding MGP_AJ_T0019218.1 MGP_AJ_G0015891.1 mouse_genomes_project 1 32039662 32041678 - Ccdc115 protein_coding retained_intron MGP_AJ_T0023251.1 MGP_AJ_G0016693.1 mouse_genomes_project 1 165860028 165882421 + MGP_AJ_P0023251 Aldh9a1 protein_coding protein_coding MGP_AJ_T0023252.1 MGP_AJ_G0016693.1 mouse_genomes_project 1 165860273 165867469 + Aldh9a1 protein_coding processed_transcript MGP_AJ_T0023253.1 MGP_AJ_G0016693.1 mouse_genomes_project 1 165860349 165868871 + Aldh9a1 protein_coding retained_intron MGP_AJ_T0023254.1 MGP_AJ_G0016693.1 mouse_genomes_project 1 165877055 165881536 + Aldh9a1 protein_coding retained_intron MGP_AJ_T0002835.1 MGP_AJ_G0002678.1 mouse_genomes_project 1 72886182 72891474 + Gm15841 antisense antisense MGP_AJ_T0022732.1 MGP_AJ_G0016595.1 mouse_genomes_project 1 154041994 154056163 + MGP_AJ_P0022732 Acbd6 protein_coding protein_coding MGP_AJ_T0022733.1 MGP_AJ_G0016595.1 mouse_genomes_project 1 154041996 154180310 + MGP_AJ_P0022733 Acbd6 protein_coding protein_coding MGP_AJ_T0022734.1 MGP_AJ_G0016595.1 mouse_genomes_project 1 154042000 154071673 + MGP_AJ_P0022734 Acbd6 protein_coding protein_coding MGP_AJ_T0022735.1 MGP_AJ_G0016595.1 mouse_genomes_project 1 154046991 154176075 + Acbd6 protein_coding processed_transcript MGP_AJ_T0022736.1 MGP_AJ_G0016595.1 mouse_genomes_project 1 154051122 154056134 + Acbd6 protein_coding retained_intron MGP_AJ_T0022737.1 MGP_AJ_G0016595.1 mouse_genomes_project 1 154175970 154177351 + MGP_AJ_P0022737 Acbd6 protein_coding nonsense_mediated_decay MGP_AJ_T0005937.1 MGP_AJ_G0004976.1 mouse_genomes_project 1 148545718 148551068 - Ptgs2os2 lincRNA lincRNA MGP_AJ_T0012082.1 MGP_AJ_G0010177.1 mouse_genomes_project 1 63366798 63367106 - processed_pseudogene processed_pseudogene MGP_AJ_T0012076.1 MGP_AJ_G0010171.1 mouse_genomes_project 1 62350402 62350620 - processed_pseudogene processed_pseudogene MGP_AJ_T0012215.1 MGP_AJ_G0010310.1 mouse_genomes_project 1 118361168 118361688 + processed_pseudogene processed_pseudogene MGP_AJ_T0002936.1 MGP_AJ_G0002757.1 mouse_genomes_project 1 162654293 162657226 - Gm16587 antisense antisense MGP_AJ_T0023125.1 MGP_AJ_G0016667.1 mouse_genomes_project 1 163299406 163327029 + MGP_AJ_P0023125 Dpt protein_coding protein_coding MGP_AJ_T0012237.1 MGP_AJ_G0010332.1 mouse_genomes_project 1 129665791 129667004 + processed_pseudogene processed_pseudogene MGP_AJ_T0017008.1 MGP_AJ_G0015079.1 mouse_genomes_project 1 86104868 86333664 - processed_transcript processed_transcript MGP_AJ_T0022430.1 MGP_AJ_G0016536.1 mouse_genomes_project 1 137940544 137980828 + MGP_AJ_P0022430 Aspm protein_coding protein_coding MGP_AJ_T0022431.1 MGP_AJ_G0016536.1 mouse_genomes_project 1 137940545 137960088 + Aspm protein_coding retained_intron MGP_AJ_T0022432.1 MGP_AJ_G0016536.1 mouse_genomes_project 1 137940547 137980831 + MGP_AJ_P0022432 Aspm protein_coding protein_coding MGP_AJ_T0022433.1 MGP_AJ_G0016536.1 mouse_genomes_project 1 137940591 137942912 + Aspm protein_coding retained_intron MGP_AJ_T0000682.1 MGP_AJ_G0000621.1 mouse_genomes_project 1 151889416 151890236 + TEC TEC MGP_AJ_T0024165.1 MGP_AJ_G0016913.1 mouse_genomes_project 1 189850481 189886445 - MGP_AJ_P0024165 Vash2 protein_coding protein_coding MGP_AJ_T0024166.1 MGP_AJ_G0016913.1 mouse_genomes_project 1 189850483 189886151 - MGP_AJ_P0024166 Vash2 protein_coding protein_coding MGP_AJ_T0024167.1 MGP_AJ_G0016913.1 mouse_genomes_project 1 189880050 189886363 - Vash2 protein_coding processed_transcript MGP_AJ_T0018818.1 MGP_AJ_G0015810.1 mouse_genomes_project 1 7113953 7219249 + MGP_AJ_P0018818 Sgk3 protein_coding protein_coding MGP_AJ_T0018819.1 MGP_AJ_G0015810.1 mouse_genomes_project 1 7113989 7219251 + MGP_AJ_P0018819 Sgk3 protein_coding protein_coding MGP_AJ_T0018820.1 MGP_AJ_G0015810.1 mouse_genomes_project 1 7113989 7219176 + MGP_AJ_P0018820 Sgk3 protein_coding nonsense_mediated_decay MGP_AJ_T0018821.1 MGP_AJ_G0015810.1 mouse_genomes_project 1 7114004 7146990 + Sgk3 protein_coding retained_intron MGP_AJ_T0018822.1 MGP_AJ_G0015810.1 mouse_genomes_project 1 7114031 7218024 + MGP_AJ_P0018822 Sgk3 protein_coding nonsense_mediated_decay MGP_AJ_T0018823.1 MGP_AJ_G0015810.1 mouse_genomes_project 1 7114054 7218414 + MGP_AJ_P0018823 Sgk3 protein_coding nonsense_mediated_decay MGP_AJ_T0018824.1 MGP_AJ_G0015810.1 mouse_genomes_project 1 7166887 7219249 + MGP_AJ_P0018824 Sgk3 protein_coding protein_coding MGP_AJ_T0018825.1 MGP_AJ_G0015810.1 mouse_genomes_project 1 7166936 7184238 + Sgk3 protein_coding processed_transcript MGP_AJ_T0018826.1 MGP_AJ_G0015810.1 mouse_genomes_project 1 7166936 7191153 + Sgk3 protein_coding retained_intron MGP_AJ_T0018827.1 MGP_AJ_G0015810.1 mouse_genomes_project 1 7167012 7218259 + MGP_AJ_P0018827 Sgk3 protein_coding protein_coding MGP_AJ_T0018828.1 MGP_AJ_G0015810.1 mouse_genomes_project 1 7201804 7207500 + Sgk3 protein_coding retained_intron MGP_AJ_T0018829.1 MGP_AJ_G0015810.1 mouse_genomes_project 1 7213844 7217593 + Sgk3 protein_coding retained_intron MGP_AJ_T0021646.1 MGP_AJ_G0016369.1 mouse_genomes_project 1 116038821 116067829 + MGP_AJ_P0021646 protein_coding protein_coding MGP_AJ_T0002841.1 MGP_AJ_G0002683.1 mouse_genomes_project 1 76281261 76295740 - Gm28410 antisense antisense MGP_AJ_T0000395.1 MGP_AJ_G0000339.1 mouse_genomes_project 1 19276998 19278536 - TEC TEC MGP_AJ_T0022377.1 MGP_AJ_G0016526.1 mouse_genomes_project 1 135136031 135141184 + MGP_AJ_P0022377 Zfp281 protein_coding protein_coding MGP_AJ_T0022378.1 MGP_AJ_G0016526.1 mouse_genomes_project 1 135136031 135141184 + MGP_AJ_P0022378 Zfp281 protein_coding protein_coding MGP_AJ_T0023661.1 MGP_AJ_G0016812.1 mouse_genomes_project 1 173292510 173614947 + MGP_AJ_P0023661 Fmn2 protein_coding protein_coding MGP_AJ_T0023662.1 MGP_AJ_G0016812.1 mouse_genomes_project 1 173327966 173376552 + Fmn2 protein_coding processed_transcript MGP_AJ_T0023663.1 MGP_AJ_G0016812.1 mouse_genomes_project 1 173403507 173409331 + Fmn2 protein_coding processed_transcript MGP_AJ_T0023664.1 MGP_AJ_G0016812.1 mouse_genomes_project 1 173403508 173492002 + MGP_AJ_P0023664 Fmn2 protein_coding protein_coding MGP_AJ_T0023665.1 MGP_AJ_G0016812.1 mouse_genomes_project 1 173406260 173497829 + Fmn2 protein_coding retained_intron MGP_AJ_T0023666.1 MGP_AJ_G0016812.1 mouse_genomes_project 1 173505538 173613492 + Fmn2 protein_coding processed_transcript MGP_AJ_T0012089.1 MGP_AJ_G0010184.1 mouse_genomes_project 1 64842162 64843802 + processed_pseudogene processed_pseudogene MGP_AJ_T0099151.1 MGP_AJ_G0037117.1 mouse_genomes_project 1 17843113 17843215 - Gm24162 snRNA snRNA MGP_AJ_T0005748.1 MGP_AJ_G0004826.1 mouse_genomes_project 1 59219981 59225827 + Gm11587 lincRNA lincRNA MGP_AJ_T0012074.1 MGP_AJ_G0010169.1 mouse_genomes_project 1 61761199 61761951 - processed_pseudogene processed_pseudogene MGP_AJ_T0000771.1 MGP_AJ_G0000709.1 mouse_genomes_project 1 180922355 180923981 - TEC TEC MGP_AJ_T0099148.1 MGP_AJ_G0037114.1 mouse_genomes_project 1 7890987 7891094 - Gm25253 snRNA snRNA MGP_AJ_T0021792.1 MGP_AJ_G0016400.1 mouse_genomes_project 1 124233204 124278423 - MGP_AJ_P0021792 Lypd1 protein_coding protein_coding MGP_AJ_T0021793.1 MGP_AJ_G0016400.1 mouse_genomes_project 1 124237863 124277596 - MGP_AJ_P0021793 Lypd1 protein_coding protein_coding MGP_AJ_T0021794.1 MGP_AJ_G0016400.1 mouse_genomes_project 1 124237897 124279138 - MGP_AJ_P0021794 Lypd1 protein_coding protein_coding MGP_AJ_T0021795.1 MGP_AJ_G0016400.1 mouse_genomes_project 1 124238680 124277125 - MGP_AJ_P0021795 Lypd1 protein_coding protein_coding MGP_AJ_T0021796.1 MGP_AJ_G0016400.1 mouse_genomes_project 1 124239097 124279311 - MGP_AJ_P0021796 Lypd1 protein_coding protein_coding MGP_AJ_T0012114.1 MGP_AJ_G0010209.1 mouse_genomes_project 1 78049408 78049672 + processed_pseudogene processed_pseudogene MGP_AJ_T0021099.1 MGP_AJ_G0016245.1 mouse_genomes_project 1 85423787 85432139 - MGP_AJ_P0021099 Kcnj13 protein_coding protein_coding MGP_AJ_T0021100.1 MGP_AJ_G0016245.1 mouse_genomes_project 1 85424426 85426814 - MGP_AJ_P0021100 Kcnj13 protein_coding protein_coding MGP_AJ_T0009521.1 MGP_AJ_G0007643.1 mouse_genomes_project 1 91570066 91570194 + Mir6345 miRNA miRNA MGP_AJ_T0000676.1 MGP_AJ_G0000615.1 mouse_genomes_project 1 149485081 149487177 + TEC TEC MGP_AJ_T0019872.1 MGP_AJ_G0016017.1 mouse_genomes_project 1 53052960 53064258 + MGP_AJ_P0019872 Mars2 protein_coding protein_coding MGP_AJ_T0021498.1 MGP_AJ_G0016331.1 mouse_genomes_project 1 92035409 92053680 + MGP_AJ_P0021498 Ing5 protein_coding nonsense_mediated_decay MGP_AJ_T0021499.1 MGP_AJ_G0016331.1 mouse_genomes_project 1 92035429 92053685 + MGP_AJ_P0021499 Ing5 protein_coding protein_coding MGP_AJ_T0009514.1 MGP_AJ_G0007636.1 mouse_genomes_project 1 84362199 84362346 - Mir3535 miRNA miRNA MGP_AJ_T0023126.1 MGP_AJ_G0016668.1 mouse_genomes_project 1 163436271 163440155 - MGP_AJ_P0023126 Xcl1 protein_coding protein_coding MGP_AJ_T0000726.1 MGP_AJ_G0000665.1 mouse_genomes_project 1 163381005 163384526 - TEC TEC MGP_AJ_T0011843.1 MGP_AJ_G0009938.1 mouse_genomes_project 1 1358200 1366607 - processed_pseudogene processed_pseudogene MGP_AJ_T0012287.1 MGP_AJ_G0010382.1 mouse_genomes_project 1 150838314 150838766 - processed_pseudogene processed_pseudogene MGP_AJ_T0017022.1 MGP_AJ_G0015085.1 mouse_genomes_project 1 133598433 133599371 - Ptprv processed_transcript retained_intron MGP_AJ_T0017023.1 MGP_AJ_G0015085.1 mouse_genomes_project 1 133598434 133625587 - Ptprv processed_transcript processed_transcript MGP_AJ_T0017024.1 MGP_AJ_G0015085.1 mouse_genomes_project 1 133598436 133599243 - Ptprv processed_transcript processed_transcript MGP_AJ_T0017025.1 MGP_AJ_G0015085.1 mouse_genomes_project 1 133598563 133599524 - Ptprv processed_transcript processed_transcript MGP_AJ_T0017026.1 MGP_AJ_G0015085.1 mouse_genomes_project 1 133599947 133600396 - Ptprv processed_transcript retained_intron MGP_AJ_T0017027.1 MGP_AJ_G0015085.1 mouse_genomes_project 1 133600206 133601472 - Ptprv processed_transcript retained_intron MGP_AJ_T0017028.1 MGP_AJ_G0015085.1 mouse_genomes_project 1 133601100 133602026 - Ptprv processed_transcript processed_transcript MGP_AJ_T0017029.1 MGP_AJ_G0015085.1 mouse_genomes_project 1 133619441 133625561 - Ptprv processed_transcript processed_transcript MGP_AJ_T0017030.1 MGP_AJ_G0015085.1 mouse_genomes_project 1 133619459 133621354 - Ptprv processed_transcript retained_intron MGP_AJ_T0017031.1 MGP_AJ_G0015085.1 mouse_genomes_project 1 133622553 133624157 - Ptprv processed_transcript processed_transcript MGP_AJ_T0017032.1 MGP_AJ_G0015085.1 mouse_genomes_project 1 133622664 133625536 - Ptprv processed_transcript processed_transcript MGP_AJ_T0012290.1 MGP_AJ_G0010385.1 mouse_genomes_project 1 151737382 151738429 + processed_pseudogene processed_pseudogene MGP_AJ_T0000722.1 MGP_AJ_G0000661.1 mouse_genomes_project 1 161615788 161617771 + TEC TEC MGP_AJ_T0019259.1 MGP_AJ_G0015901.1 mouse_genomes_project 1 33653756 33691652 + MGP_AJ_P0019259 Hs6st1 protein_coding protein_coding MGP_AJ_T0019260.1 MGP_AJ_G0015901.1 mouse_genomes_project 1 33686893 33690182 + Hs6st1 protein_coding retained_intron MGP_AJ_T0002949.1 MGP_AJ_G0002767.1 mouse_genomes_project 1 169514887 169519287 + Gm38204 antisense antisense MGP_AJ_T0009568.1 MGP_AJ_G0007690.1 mouse_genomes_project 1 193697088 193697152 + Mir3962 miRNA miRNA MGP_AJ_T0002801.1 MGP_AJ_G0002656.1 mouse_genomes_project 1 49003143 49119732 - 9330175M20Rik antisense antisense MGP_AJ_T0100452.1 MGP_AJ_G0038418.1 mouse_genomes_project 1 105857333 105857464 - Gm24553 snoRNA snoRNA MGP_AJ_T0098515.1 MGP_AJ_G0036499.1 mouse_genomes_project 1 148183435 148183567 + n-R5s219 rRNA rRNA MGP_AJ_T0005855.1 MGP_AJ_G0004911.1 mouse_genomes_project 1 96864611 96953054 + lincRNA lincRNA MGP_AJ_T0005856.1 MGP_AJ_G0004911.1 mouse_genomes_project 1 96864612 96952814 + lincRNA lincRNA MGP_AJ_T0012366.1 MGP_AJ_G0010461.1 mouse_genomes_project 1 188160909 188161290 - processed_pseudogene processed_pseudogene MGP_AJ_T0022831.1 MGP_AJ_G0016611.1 mouse_genomes_project 1 155574404 155583916 - MGP_AJ_P0022831 Tex35 protein_coding protein_coding MGP_AJ_T0022832.1 MGP_AJ_G0016611.1 mouse_genomes_project 1 155574404 155583916 - MGP_AJ_P0022832 Tex35 protein_coding protein_coding MGP_AJ_T0022833.1 MGP_AJ_G0016611.1 mouse_genomes_project 1 155574412 155583915 - MGP_AJ_P0022833 Tex35 protein_coding protein_coding MGP_AJ_T0022834.1 MGP_AJ_G0016611.1 mouse_genomes_project 1 155574419 155583946 - MGP_AJ_P0022834 Tex35 protein_coding protein_coding MGP_AJ_T0022835.1 MGP_AJ_G0016611.1 mouse_genomes_project 1 155574578 155583654 - MGP_AJ_P0022835 Tex35 protein_coding protein_coding MGP_AJ_T0022836.1 MGP_AJ_G0016611.1 mouse_genomes_project 1 155574580 155583911 - MGP_AJ_P0022836 Tex35 protein_coding nonsense_mediated_decay MGP_AJ_T0011942.1 MGP_AJ_G0010037.1 mouse_genomes_project 1 28506618 28507262 - processed_pseudogene processed_pseudogene MGP_AJ_T0012153.1 MGP_AJ_G0010248.1 mouse_genomes_project 1 97135087 97135801 + processed_pseudogene processed_pseudogene MGP_AJ_T0012028.1 MGP_AJ_G0010123.1 mouse_genomes_project 1 50520518 50520929 + processed_pseudogene processed_pseudogene MGP_AJ_T0002813.1 MGP_AJ_G0002665.1 mouse_genomes_project 1 57430615 57446235 - Gm28411 antisense antisense MGP_AJ_T0002815.1 MGP_AJ_G0002665.1 mouse_genomes_project 1 57439780 57446968 - Gm28411 antisense antisense MGP_AJ_T0021562.1 MGP_AJ_G0016349.1 mouse_genomes_project 1 103643716 103728044 - MGP_AJ_P0021562 Rnf152 protein_coding protein_coding MGP_AJ_T0021563.1 MGP_AJ_G0016349.1 mouse_genomes_project 1 103643719 103728082 - MGP_AJ_P0021563 Rnf152 protein_coding protein_coding MGP_AJ_T0018916.1 MGP_AJ_G0015821.1 mouse_genomes_project 1 10206549 10323541 - MGP_AJ_P0018916 Slco5a1 protein_coding protein_coding MGP_AJ_T0018917.1 MGP_AJ_G0015821.1 mouse_genomes_project 1 10214748 10323960 - MGP_AJ_P0018917 Slco5a1 protein_coding protein_coding MGP_AJ_T0018918.1 MGP_AJ_G0015821.1 mouse_genomes_project 1 10214748 10323960 - MGP_AJ_P0018918 Slco5a1 protein_coding protein_coding MGP_AJ_T0018919.1 MGP_AJ_G0015821.1 mouse_genomes_project 1 10216390 10258223 - Slco5a1 protein_coding processed_transcript MGP_AJ_T0018920.1 MGP_AJ_G0015821.1 mouse_genomes_project 1 10309004 10324223 - Slco5a1 protein_coding processed_transcript MGP_AJ_T0022857.1 MGP_AJ_G0016616.1 mouse_genomes_project 1 156829495 157158325 + MGP_AJ_P0022857 Astn1 protein_coding protein_coding MGP_AJ_T0022858.1 MGP_AJ_G0016616.1 mouse_genomes_project 1 156829526 157158327 + MGP_AJ_P0022858 Astn1 protein_coding protein_coding MGP_AJ_T0022859.1 MGP_AJ_G0016616.1 mouse_genomes_project 1 156829562 157078824 + MGP_AJ_P0022859 Astn1 protein_coding protein_coding MGP_AJ_T0022860.1 MGP_AJ_G0016616.1 mouse_genomes_project 1 156829890 157077052 + MGP_AJ_P0022860 Astn1 protein_coding protein_coding MGP_AJ_T0022861.1 MGP_AJ_G0016616.1 mouse_genomes_project 1 156829903 157146108 + MGP_AJ_P0022861 Astn1 protein_coding protein_coding MGP_AJ_T0022862.1 MGP_AJ_G0016616.1 mouse_genomes_project 1 156980312 156991394 + Astn1 protein_coding processed_transcript MGP_AJ_T0022863.1 MGP_AJ_G0016616.1 mouse_genomes_project 1 157024086 157063898 + MGP_AJ_P0022863 Astn1 protein_coding protein_coding MGP_AJ_T0022864.1 MGP_AJ_G0016616.1 mouse_genomes_project 1 157063648 157076222 + Astn1 protein_coding retained_intron MGP_AJ_T0022865.1 MGP_AJ_G0016616.1 mouse_genomes_project 1 157120209 157130594 + MGP_AJ_P0022865 Astn1 protein_coding nonsense_mediated_decay MGP_AJ_T0022866.1 MGP_AJ_G0016616.1 mouse_genomes_project 1 157120357 157150842 + MGP_AJ_P0022866 Astn1 protein_coding protein_coding MGP_AJ_T0022867.1 MGP_AJ_G0016616.1 mouse_genomes_project 1 157145407 157155078 + Astn1 protein_coding processed_transcript MGP_AJ_T0022198.1 MGP_AJ_G0016490.1 mouse_genomes_project 1 132873459 132891419 + MGP_AJ_P0022198 Adipor1 protein_coding protein_coding MGP_AJ_T0022199.1 MGP_AJ_G0016490.1 mouse_genomes_project 1 132873537 132891416 + MGP_AJ_P0022199 Adipor1 protein_coding protein_coding MGP_AJ_T0022200.1 MGP_AJ_G0016490.1 mouse_genomes_project 1 132873552 132874022 + Adipor1 protein_coding processed_transcript MGP_AJ_T0022201.1 MGP_AJ_G0016490.1 mouse_genomes_project 1 132873645 132884980 + Adipor1 protein_coding retained_intron MGP_AJ_T0021261.1 MGP_AJ_G0016282.1 mouse_genomes_project 1 89335621 89338291 + Rbm44 protein_coding retained_intron MGP_AJ_T0021262.1 MGP_AJ_G0016282.1 mouse_genomes_project 1 89335633 89343256 + MGP_AJ_P0021262 Rbm44 protein_coding protein_coding MGP_AJ_T0021263.1 MGP_AJ_G0016282.1 mouse_genomes_project 1 89335635 89362196 + MGP_AJ_P0021263 Rbm44 protein_coding protein_coding MGP_AJ_T0021264.1 MGP_AJ_G0016282.1 mouse_genomes_project 1 89360029 89361694 + Rbm44 protein_coding retained_intron MGP_AJ_T0021369.1 MGP_AJ_G0016308.1 mouse_genomes_project 1 91079559 91121676 - MGP_AJ_P0021369 Ankmy1 protein_coding unknown_likely_coding MGP_AJ_T0021370.1 MGP_AJ_G0016308.1 mouse_genomes_project 1 91088506 91121999 - MGP_AJ_P0021370 Ankmy1 protein_coding protein_coding MGP_AJ_T0021371.1 MGP_AJ_G0016308.1 mouse_genomes_project 1 91088506 91121999 - MGP_AJ_P0021371 Ankmy1 protein_coding protein_coding MGP_AJ_T0020261.1 MGP_AJ_G0016089.1 mouse_genomes_project 1 62995643 63014495 - MGP_AJ_P0020261 Gm28845 protein_coding protein_coding MGP_AJ_T0012253.1 MGP_AJ_G0010348.1 mouse_genomes_project 1 137404760 137405199 - processed_pseudogene processed_pseudogene MGP_AJ_T0018933.1 MGP_AJ_G0015824.1 mouse_genomes_project 1 10882560 10908436 - MGP_AJ_P0018933 Tram1 protein_coding protein_coding MGP_AJ_T0018934.1 MGP_AJ_G0015824.1 mouse_genomes_project 1 10894007 10897658 - Tram1 protein_coding retained_intron MGP_AJ_T0018935.1 MGP_AJ_G0015824.1 mouse_genomes_project 1 10895981 10908403 - MGP_AJ_P0018935 Tram1 protein_coding nonsense_mediated_decay MGP_AJ_T0000628.1 MGP_AJ_G0000569.1 mouse_genomes_project 1 131390356 131392165 - TEC TEC MGP_AJ_T0000579.1 MGP_AJ_G0000520.1 mouse_genomes_project 1 104432151 104435462 - TEC TEC MGP_AJ_T0005901.1 MGP_AJ_G0004946.1 mouse_genomes_project 1 129200813 129218760 + Gm28856 lincRNA lincRNA MGP_AJ_T0020409.1 MGP_AJ_G0016116.1 mouse_genomes_project 1 70473770 70518531 + Smarcal1 protein_coding retained_intron MGP_AJ_T0020410.1 MGP_AJ_G0016116.1 mouse_genomes_project 1 70473770 70489929 + Smarcal1 protein_coding retained_intron MGP_AJ_T0020411.1 MGP_AJ_G0016116.1 mouse_genomes_project 1 70473770 70486782 + Smarcal1 protein_coding retained_intron MGP_AJ_T0020412.1 MGP_AJ_G0016116.1 mouse_genomes_project 1 70473770 70524769 + MGP_AJ_P0020412 Smarcal1 protein_coding protein_coding MGP_AJ_T0020413.1 MGP_AJ_G0016116.1 mouse_genomes_project 1 70473770 70476512 + MGP_AJ_P0020413 Smarcal1 protein_coding protein_coding MGP_AJ_T0020414.1 MGP_AJ_G0016116.1 mouse_genomes_project 1 70473770 70486342 + MGP_AJ_P0020414 Smarcal1 protein_coding protein_coding MGP_AJ_T0020415.1 MGP_AJ_G0016116.1 mouse_genomes_project 1 70474134 70524769 + MGP_AJ_P0020415 Smarcal1 protein_coding protein_coding MGP_AJ_T0020416.1 MGP_AJ_G0016116.1 mouse_genomes_project 1 70476158 70518531 + Smarcal1 protein_coding retained_intron MGP_AJ_T0020417.1 MGP_AJ_G0016116.1 mouse_genomes_project 1 70506992 70519911 + Smarcal1 protein_coding retained_intron MGP_AJ_T0009556.1 MGP_AJ_G0007678.1 mouse_genomes_project 1 172107395 172107485 + Gm44481 miRNA miRNA MGP_AJ_T0100459.1 MGP_AJ_G0038425.1 mouse_genomes_project 1 121767299 121767430 - Gm24791 snoRNA snoRNA MGP_AJ_T0005684.1 MGP_AJ_G0004784.1 mouse_genomes_project 1 33717171 33723851 + Gm33280 lincRNA lincRNA MGP_AJ_T0100463.1 MGP_AJ_G0038429.1 mouse_genomes_project 1 132059522 132059655 + Gm23939 snoRNA snoRNA MGP_AJ_T0024307.1 MGP_AJ_G0016941.1 mouse_genomes_project 1 192071399 192092314 - MGP_AJ_P0024307 Hsd11b1 protein_coding protein_coding MGP_AJ_T0024308.1 MGP_AJ_G0016941.1 mouse_genomes_project 1 192071447 192091278 - MGP_AJ_P0024308 Hsd11b1 protein_coding protein_coding MGP_AJ_T0024309.1 MGP_AJ_G0016941.1 mouse_genomes_project 1 192071454 192117413 - MGP_AJ_P0024309 Hsd11b1 protein_coding protein_coding MGP_AJ_T0024310.1 MGP_AJ_G0016941.1 mouse_genomes_project 1 192073406 192093245 - MGP_AJ_P0024310 Hsd11b1 protein_coding protein_coding MGP_AJ_T0024311.1 MGP_AJ_G0016941.1 mouse_genomes_project 1 192079146 192090080 - MGP_AJ_P0024311 Hsd11b1 protein_coding protein_coding MGP_AJ_T0024312.1 MGP_AJ_G0016941.1 mouse_genomes_project 1 192086711 192088693 - Hsd11b1 protein_coding retained_intron MGP_AJ_T0024313.1 MGP_AJ_G0016941.1 mouse_genomes_project 1 192087939 192091104 - Hsd11b1 protein_coding processed_transcript MGP_AJ_T0011975.1 MGP_AJ_G0010070.1 mouse_genomes_project 1 36383527 36384029 + processed_pseudogene processed_pseudogene MGP_AJ_T0021168.1 MGP_AJ_G0016254.1 mouse_genomes_project 1 86104863 86329783 + MGP_AJ_P0021168 Ugt1a10 protein_coding protein_coding MGP_AJ_T0021169.1 MGP_AJ_G0016254.1 mouse_genomes_project 1 86104886 86334105 + MGP_AJ_P0021169 Ugt1a10 protein_coding protein_coding MGP_AJ_T0021170.1 MGP_AJ_G0016254.1 mouse_genomes_project 1 86104955 86329715 + MGP_AJ_P0021170 Ugt1a10 protein_coding protein_coding MGP_AJ_T0019941.1 MGP_AJ_G0016032.1 mouse_genomes_project 1 56215800 56230381 + MGP_AJ_P0019941 Bzw1 protein_coding protein_coding MGP_AJ_T0019942.1 MGP_AJ_G0016032.1 mouse_genomes_project 1 56216026 56225907 + MGP_AJ_P0019942 Bzw1 protein_coding protein_coding MGP_AJ_T0019943.1 MGP_AJ_G0016032.1 mouse_genomes_project 1 56216034 56228509 + MGP_AJ_P0019943 Bzw1 protein_coding nonsense_mediated_decay MGP_AJ_T0019944.1 MGP_AJ_G0016032.1 mouse_genomes_project 1 56216372 56228140 + MGP_AJ_P0019944 Bzw1 protein_coding protein_coding MGP_AJ_T0005643.1 MGP_AJ_G0004750.1 mouse_genomes_project 1 4552913 4556346 - lincRNA retained_intron MGP_AJ_T0009488.1 MGP_AJ_G0007610.1 mouse_genomes_project 1 46854109 46854551 + Gm22693 miRNA miRNA MGP_AJ_T0100414.1 MGP_AJ_G0038380.1 mouse_genomes_project 1 28787071 28787198 - Gm26145 snoRNA snoRNA MGP_AJ_T0019415.1 MGP_AJ_G0015926.1 mouse_genomes_project 1 35513552 35517158 + MGP_AJ_P0019415 Lipt1 protein_coding protein_coding MGP_AJ_T0019416.1 MGP_AJ_G0015926.1 mouse_genomes_project 1 35514020 35518043 + MGP_AJ_P0019416 Lipt1 protein_coding protein_coding MGP_AJ_T0019417.1 MGP_AJ_G0015926.1 mouse_genomes_project 1 35514188 35517275 + MGP_AJ_P0019417 Lipt1 protein_coding protein_coding MGP_AJ_T0019418.1 MGP_AJ_G0015926.1 mouse_genomes_project 1 35514376 35517369 + MGP_AJ_P0019418 Lipt1 protein_coding protein_coding MGP_AJ_T0005843.1 MGP_AJ_G0004901.1 mouse_genomes_project 1 90931028 90933997 - Gm29483 lincRNA lincRNA MGP_AJ_T0023634.1 MGP_AJ_G0016793.1 mouse_genomes_project 1 172455320 172476941 - MGP_AJ_P0023634 protein_coding protein_coding MGP_AJ_T0023637.1 MGP_AJ_G0016793.1 mouse_genomes_project 1 172468626 172477004 - protein_coding retained_intron MGP_AJ_T0012182.1 MGP_AJ_G0010277.1 mouse_genomes_project 1 107144782 107146651 + processed_pseudogene processed_pseudogene MGP_AJ_T0022137.1 MGP_AJ_G0016474.1 mouse_genomes_project 1 132115042 132120049 - MGP_AJ_P0022137 Gm38394 protein_coding protein_coding MGP_AJ_T0006055.1 MGP_AJ_G0005068.1 mouse_genomes_project 1 190127627 190129009 + D730003I15Rik lincRNA lincRNA MGP_AJ_T0006056.1 MGP_AJ_G0005068.1 mouse_genomes_project 1 190127647 190129314 + D730003I15Rik lincRNA lincRNA MGP_AJ_T0012195.1 MGP_AJ_G0010290.1 mouse_genomes_project 1 110683349 110684018 - processed_pseudogene processed_pseudogene MGP_AJ_T0000597.1 MGP_AJ_G0000538.1 mouse_genomes_project 1 121838770 121841991 - TEC TEC MGP_AJ_T0101925.1 MGP_AJ_G0039781.1 mouse_genomes_project 1 51085773 51092845 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_AJ_T0101926.1 MGP_AJ_G0039781.1 mouse_genomes_project 1 51085799 51101944 - transcribed_unprocessed_pseudogene processed_transcript MGP_AJ_T0011933.1 MGP_AJ_G0010028.1 mouse_genomes_project 1 26028787 26029061 - processed_pseudogene processed_pseudogene MGP_AJ_T0009526.1 MGP_AJ_G0007648.1 mouse_genomes_project 1 104908965 104909101 - Mir3473f miRNA miRNA MGP_AJ_T0012281.1 MGP_AJ_G0010376.1 mouse_genomes_project 1 148950347 148950707 + processed_pseudogene processed_pseudogene MGP_AJ_T0012091.1 MGP_AJ_G0010186.1 mouse_genomes_project 1 66199202 66199649 - processed_pseudogene processed_pseudogene MGP_AJ_T0012193.1 MGP_AJ_G0010288.1 mouse_genomes_project 1 110437396 110438406 + processed_pseudogene processed_pseudogene MGP_AJ_T0099220.1 MGP_AJ_G0037186.1 mouse_genomes_project 1 168288908 168289015 - Gm22114 snRNA snRNA MGP_AJ_T0023323.1 MGP_AJ_G0016716.1 mouse_genomes_project 1 169457776 169463428 - MGP_AJ_P0023323 Fcrlb protein_coding protein_coding MGP_AJ_T0012337.1 MGP_AJ_G0010432.1 mouse_genomes_project 1 171354723 171355154 + processed_pseudogene processed_pseudogene MGP_AJ_T0005699.1 MGP_AJ_G0004795.1 mouse_genomes_project 1 39980950 39981349 + lincRNA lincRNA MGP_AJ_T0000744.1 MGP_AJ_G0000683.1 mouse_genomes_project 1 174955559 174957990 + TEC TEC MGP_AJ_T0005771.1 MGP_AJ_G0004845.1 mouse_genomes_project 1 69779054 69782115 + Gm8883 lincRNA lincRNA MGP_AJ_T0005772.1 MGP_AJ_G0004845.1 mouse_genomes_project 1 69779059 69781646 + Gm8883 lincRNA lincRNA MGP_AJ_T0005773.1 MGP_AJ_G0004845.1 mouse_genomes_project 1 69779344 69780780 + Gm8883 lincRNA lincRNA MGP_AJ_T0005774.1 MGP_AJ_G0004845.1 mouse_genomes_project 1 69779445 69781498 + Gm8883 lincRNA lincRNA MGP_AJ_T0000537.1 MGP_AJ_G0000478.1 mouse_genomes_project 1 81310385 81311674 - TEC TEC MGP_AJ_T0000407.1 MGP_AJ_G0000349.1 mouse_genomes_project 1 22773744 22777052 - TEC TEC MGP_AJ_T0002990.1 MGP_AJ_G0002802.1 mouse_genomes_project 1 189983266 189984122 - Gm38188 antisense antisense MGP_AJ_T0020542.1 MGP_AJ_G0016141.1 mouse_genomes_project 1 72582795 72618110 + MGP_AJ_P0020542 Stk36 protein_coding protein_coding MGP_AJ_T0020543.1 MGP_AJ_G0016141.1 mouse_genomes_project 1 72582830 72618107 + Stk36 protein_coding retained_intron MGP_AJ_T0020544.1 MGP_AJ_G0016141.1 mouse_genomes_project 1 72582853 72615316 + MGP_AJ_P0020544 Stk36 protein_coding protein_coding MGP_AJ_T0020545.1 MGP_AJ_G0016141.1 mouse_genomes_project 1 72582864 72586880 + MGP_AJ_P0020545 Stk36 protein_coding protein_coding MGP_AJ_T0020546.1 MGP_AJ_G0016141.1 mouse_genomes_project 1 72582989 72617259 + MGP_AJ_P0020546 Stk36 protein_coding protein_coding MGP_AJ_T0020547.1 MGP_AJ_G0016141.1 mouse_genomes_project 1 72584564 72589755 + MGP_AJ_P0020547 Stk36 protein_coding nonsense_mediated_decay MGP_AJ_T0020548.1 MGP_AJ_G0016141.1 mouse_genomes_project 1 72602998 72606560 + Stk36 protein_coding retained_intron MGP_AJ_T0020549.1 MGP_AJ_G0016141.1 mouse_genomes_project 1 72603475 72617302 + Stk36 protein_coding processed_transcript MGP_AJ_T0020550.1 MGP_AJ_G0016141.1 mouse_genomes_project 1 72607113 72618110 + Stk36 protein_coding retained_intron MGP_AJ_T0021725.1 MGP_AJ_G0016382.1 mouse_genomes_project 1 118284609 118289927 - MGP_AJ_P0021725 Tmem177 protein_coding protein_coding MGP_AJ_T0012030.1 MGP_AJ_G0010125.1 mouse_genomes_project 1 51122430 51122753 - processed_pseudogene processed_pseudogene MGP_AJ_T0022844.1 MGP_AJ_G0016613.1 mouse_genomes_project 1 155937935 155969096 + MGP_AJ_P0022844 BC026585 protein_coding protein_coding MGP_AJ_T0022845.1 MGP_AJ_G0016613.1 mouse_genomes_project 1 155937954 155968979 + MGP_AJ_P0022845 BC026585 protein_coding unknown_likely_coding MGP_AJ_T0022846.1 MGP_AJ_G0016613.1 mouse_genomes_project 1 155942451 155951172 + MGP_AJ_P0022846 BC026585 protein_coding protein_coding MGP_AJ_T0022847.1 MGP_AJ_G0016613.1 mouse_genomes_project 1 155952753 155972993 + MGP_AJ_P0022847 BC026585 protein_coding nonsense_mediated_decay MGP_AJ_T0023593.1 MGP_AJ_G0016774.1 mouse_genomes_project 1 171219618 171223257 - MGP_AJ_P0023593 Dusp23 protein_coding protein_coding MGP_AJ_T0019389.1 MGP_AJ_G0015921.1 mouse_genomes_project 1 35044624 35058737 - MGP_AJ_P0019389 Coa5 protein_coding protein_coding MGP_AJ_T0019390.1 MGP_AJ_G0015921.1 mouse_genomes_project 1 35057144 35058634 - Coa5 protein_coding retained_intron MGP_AJ_T0020903.1 MGP_AJ_G0016204.1 mouse_genomes_project 1 80978515 81007053 - MGP_AJ_P0020903 Slc19a3 protein_coding protein_coding MGP_AJ_T0020904.1 MGP_AJ_G0016204.1 mouse_genomes_project 1 80978516 80987499 - Slc19a3 protein_coding processed_transcript MGP_AJ_T0020905.1 MGP_AJ_G0016204.1 mouse_genomes_project 1 80979792 81007036 - MGP_AJ_P0020905 Slc19a3 protein_coding protein_coding MGP_AJ_T0017075.1 MGP_AJ_G0015095.1 mouse_genomes_project 1 163371156 163379611 + Gm20743 processed_transcript lincRNA MGP_AJ_T0017076.1 MGP_AJ_G0015095.1 mouse_genomes_project 1 163371381 163441403 + Gm20743 processed_transcript antisense MGP_AJ_T0000707.1 MGP_AJ_G0000646.1 mouse_genomes_project 1 159049657 159053144 - TEC TEC MGP_AJ_T0011908.1 MGP_AJ_G0010003.1 mouse_genomes_project 1 16756607 16758851 + processed_pseudogene processed_pseudogene MGP_AJ_T0020528.1 MGP_AJ_G0016139.1 mouse_genomes_project 1 72566747 72570583 + MGP_AJ_P0020528 Bcs1l protein_coding protein_coding MGP_AJ_T0020529.1 MGP_AJ_G0016139.1 mouse_genomes_project 1 72566758 72570912 + MGP_AJ_P0020529 Bcs1l protein_coding protein_coding MGP_AJ_T0020530.1 MGP_AJ_G0016139.1 mouse_genomes_project 1 72566832 72570648 + MGP_AJ_P0020530 Bcs1l protein_coding protein_coding MGP_AJ_T0020531.1 MGP_AJ_G0016139.1 mouse_genomes_project 1 72568724 72569367 + Bcs1l protein_coding retained_intron MGP_AJ_T0000374.1 MGP_AJ_G0000318.1 mouse_genomes_project 1 10397343 10397894 - TEC TEC MGP_AJ_T0098812.1 MGP_AJ_G0036796.1 mouse_genomes_project 1 125670888 125671018 + Gm23370 scaRNA scaRNA MGP_AJ_T0012024.1 MGP_AJ_G0010119.1 mouse_genomes_project 1 49719735 49720333 - processed_pseudogene processed_pseudogene MGP_AJ_T0000779.1 MGP_AJ_G0000716.1 mouse_genomes_project 1 184975731 184975924 - TEC TEC MGP_AJ_T0000663.1 MGP_AJ_G0000602.1 mouse_genomes_project 1 139928678 139931788 - TEC TEC MGP_AJ_T0023792.1 MGP_AJ_G0016842.1 mouse_genomes_project 1 178618867 178677536 - MGP_AJ_P0023792 Ahctf1 protein_coding protein_coding MGP_AJ_T0023793.1 MGP_AJ_G0016842.1 mouse_genomes_project 1 178619310 178626404 - MGP_AJ_P0023793 Ahctf1 protein_coding protein_coding MGP_AJ_T0023794.1 MGP_AJ_G0016842.1 mouse_genomes_project 1 178620064 178627569 - Ahctf1 protein_coding retained_intron MGP_AJ_T0023795.1 MGP_AJ_G0016842.1 mouse_genomes_project 1 178627687 178631977 - MGP_AJ_P0023795 Ahctf1 protein_coding nonsense_mediated_decay MGP_AJ_T0023796.1 MGP_AJ_G0016842.1 mouse_genomes_project 1 178634250 178639869 - MGP_AJ_P0023796 Ahctf1 protein_coding nonsense_mediated_decay MGP_AJ_T0023797.1 MGP_AJ_G0016842.1 mouse_genomes_project 1 178642265 178644888 - MGP_AJ_P0023797 Ahctf1 protein_coding protein_coding MGP_AJ_T0023798.1 MGP_AJ_G0016842.1 mouse_genomes_project 1 178666878 178670042 - Ahctf1 protein_coding retained_intron MGP_AJ_T0023799.1 MGP_AJ_G0016842.1 mouse_genomes_project 1 178672703 178675929 - Ahctf1 protein_coding retained_intron MGP_AJ_T0023800.1 MGP_AJ_G0016842.1 mouse_genomes_project 1 178672709 178677462 - Ahctf1 protein_coding retained_intron MGP_AJ_T0012135.1 MGP_AJ_G0010230.1 mouse_genomes_project 1 86924261 86924725 - processed_pseudogene processed_pseudogene MGP_AJ_T0023258.1 MGP_AJ_G0016697.1 mouse_genomes_project 1 166204716 166356733 + MGP_AJ_P0023258 Lmx1a protein_coding unknown_likely_coding MGP_AJ_T0019547.1 MGP_AJ_G0015954.1 mouse_genomes_project 1 38268384 38319303 + MGP_AJ_P0019547 Slc9a4 protein_coding protein_coding MGP_AJ_T0019548.1 MGP_AJ_G0015954.1 mouse_genomes_project 1 38268507 38273725 + Slc9a4 protein_coding processed_transcript MGP_AJ_T0019549.1 MGP_AJ_G0015954.1 mouse_genomes_project 1 38288890 38291201 + Slc9a4 protein_coding processed_transcript MGP_AJ_T0019550.1 MGP_AJ_G0015954.1 mouse_genomes_project 1 38317545 38318994 + Slc9a4 protein_coding retained_intron MGP_AJ_T0019815.1 MGP_AJ_G0016007.1 mouse_genomes_project 1 52048807 52070835 + Ccdc150 protein_coding retained_intron MGP_AJ_T0019816.1 MGP_AJ_G0016007.1 mouse_genomes_project 1 52048807 52169976 + MGP_AJ_P0019816 Ccdc150 protein_coding protein_coding MGP_AJ_T0019817.1 MGP_AJ_G0016007.1 mouse_genomes_project 1 52048846 52169719 + MGP_AJ_P0019817 Ccdc150 protein_coding nonsense_mediated_decay MGP_AJ_T0019818.1 MGP_AJ_G0016007.1 mouse_genomes_project 1 52129992 52169857 + Ccdc150 protein_coding processed_transcript MGP_AJ_T0019819.1 MGP_AJ_G0016007.1 mouse_genomes_project 1 52156127 52169852 + Ccdc150 protein_coding retained_intron MGP_AJ_T0019929.1 MGP_AJ_G0016029.1 mouse_genomes_project 1 55936677 55938557 + Aox3 protein_coding retained_intron MGP_AJ_T0019930.1 MGP_AJ_G0016029.1 mouse_genomes_project 1 55936683 56025359 + MGP_AJ_P0019930 Aox3 protein_coding protein_coding MGP_AJ_T0019931.1 MGP_AJ_G0016029.1 mouse_genomes_project 1 55936685 55945643 + Aox3 protein_coding retained_intron MGP_AJ_T0019932.1 MGP_AJ_G0016029.1 mouse_genomes_project 1 55936733 55963335 + MGP_AJ_P0019932 Aox3 protein_coding protein_coding MGP_AJ_T0019933.1 MGP_AJ_G0016029.1 mouse_genomes_project 1 55994563 55997187 + Aox3 protein_coding retained_intron MGP_AJ_T0023615.1 MGP_AJ_G0016786.1 mouse_genomes_project 1 171932249 172046877 + MGP_AJ_P0023615 Aim2 protein_coding protein_coding MGP_AJ_T0023616.1 MGP_AJ_G0016786.1 mouse_genomes_project 1 172000164 172008733 + Aim2 protein_coding processed_transcript MGP_AJ_T0023617.1 MGP_AJ_G0016786.1 mouse_genomes_project 1 172001580 172040568 + MGP_AJ_P0023617 Aim2 protein_coding protein_coding MGP_AJ_T0023618.1 MGP_AJ_G0016786.1 mouse_genomes_project 1 172035845 172036470 + MGP_AJ_P0023618 Aim2 protein_coding protein_coding MGP_AJ_T0023619.1 MGP_AJ_G0016786.1 mouse_genomes_project 1 172036228 172042855 + Aim2 protein_coding processed_transcript MGP_AJ_T0023620.1 MGP_AJ_G0016786.1 mouse_genomes_project 1 172036228 172046869 + MGP_AJ_P0023620 Aim2 protein_coding protein_coding MGP_AJ_T0023621.1 MGP_AJ_G0016786.1 mouse_genomes_project 1 172036362 172037040 + Aim2 protein_coding processed_transcript MGP_AJ_T0012131.1 MGP_AJ_G0010226.1 mouse_genomes_project 1 84485336 84485684 + processed_pseudogene processed_pseudogene MGP_AJ_T0000448.1 MGP_AJ_G0000389.1 mouse_genomes_project 1 35287317 35289231 + TEC TEC MGP_AJ_T0100408.1 MGP_AJ_G0038374.1 mouse_genomes_project 1 16926041 16926106 - Gm24633 snoRNA snoRNA MGP_AJ_T0098862.1 MGP_AJ_G0036846.1 mouse_genomes_project 1 35728035 35729046 - Gm37062 sense_intronic sense_intronic MGP_AJ_T0006050.1 MGP_AJ_G0005063.1 mouse_genomes_project 1 189287091 189301614 + Gm29678 lincRNA lincRNA MGP_AJ_T0023745.1 MGP_AJ_G0016829.1 mouse_genomes_project 1 176530388 176571451 - MGP_AJ_P0023745 Adss protein_coding protein_coding MGP_AJ_T0023746.1 MGP_AJ_G0016829.1 mouse_genomes_project 1 176530603 176536015 - Adss protein_coding retained_intron MGP_AJ_T0023747.1 MGP_AJ_G0016829.1 mouse_genomes_project 1 176542025 176571441 - Adss protein_coding retained_intron MGP_AJ_T0002888.1 MGP_AJ_G0002721.1 mouse_genomes_project 1 131706861 131726241 - Gm19461 antisense antisense MGP_AJ_T0002889.1 MGP_AJ_G0002721.1 mouse_genomes_project 1 131707671 131713582 - Gm19461 antisense antisense MGP_AJ_T0002890.1 MGP_AJ_G0002721.1 mouse_genomes_project 1 131710366 131710756 - Gm19461 antisense antisense MGP_AJ_T0002891.1 MGP_AJ_G0002721.1 mouse_genomes_project 1 131710746 131712816 - Gm19461 antisense antisense MGP_AJ_T0002892.1 MGP_AJ_G0002721.1 mouse_genomes_project 1 131713004 131715137 - Gm19461 antisense antisense MGP_AJ_T0022501.1 MGP_AJ_G0016553.1 mouse_genomes_project 1 144881510 145287901 + MGP_AJ_P0022501 Brinp3 protein_coding protein_coding MGP_AJ_T0022502.1 MGP_AJ_G0016553.1 mouse_genomes_project 1 144884365 145137405 + MGP_AJ_P0022502 Brinp3 protein_coding protein_coding MGP_AJ_T0022503.1 MGP_AJ_G0016553.1 mouse_genomes_project 1 144884438 145287902 + MGP_AJ_P0022503 Brinp3 protein_coding protein_coding MGP_AJ_T0022504.1 MGP_AJ_G0016553.1 mouse_genomes_project 1 144884455 145287896 + MGP_AJ_P0022504 Brinp3 protein_coding nonsense_mediated_decay MGP_AJ_T0022505.1 MGP_AJ_G0016553.1 mouse_genomes_project 1 144884489 144904297 + Brinp3 protein_coding retained_intron MGP_AJ_T0102191.1 MGP_AJ_G0039934.1 mouse_genomes_project 1 171672247 171672494 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0012276.1 MGP_AJ_G0010371.1 mouse_genomes_project 1 147326944 147330917 + processed_pseudogene processed_pseudogene MGP_AJ_T0023426.1 MGP_AJ_G0016735.1 mouse_genomes_project 1 169904950 169918071 + MGP_AJ_P0023426 Dedd protein_coding protein_coding MGP_AJ_T0023427.1 MGP_AJ_G0016735.1 mouse_genomes_project 1 169905204 169918065 + MGP_AJ_P0023427 Dedd protein_coding protein_coding MGP_AJ_T0023428.1 MGP_AJ_G0016735.1 mouse_genomes_project 1 169905213 169917426 + MGP_AJ_P0023428 Dedd protein_coding protein_coding MGP_AJ_T0023429.1 MGP_AJ_G0016735.1 mouse_genomes_project 1 169905371 169916037 + MGP_AJ_P0023429 Dedd protein_coding protein_coding MGP_AJ_T0023430.1 MGP_AJ_G0016735.1 mouse_genomes_project 1 169905412 169916693 + MGP_AJ_P0023430 Dedd protein_coding protein_coding MGP_AJ_T0023431.1 MGP_AJ_G0016735.1 mouse_genomes_project 1 169905886 169914152 + MGP_AJ_P0023431 Dedd protein_coding protein_coding MGP_AJ_T0023432.1 MGP_AJ_G0016735.1 mouse_genomes_project 1 169906163 169914081 + MGP_AJ_P0023432 Dedd protein_coding protein_coding MGP_AJ_T0023433.1 MGP_AJ_G0016735.1 mouse_genomes_project 1 169907238 169917360 + MGP_AJ_P0023433 Dedd protein_coding protein_coding MGP_AJ_T0023434.1 MGP_AJ_G0016735.1 mouse_genomes_project 1 169912554 169915874 + Dedd protein_coding retained_intron MGP_AJ_T0023435.1 MGP_AJ_G0016735.1 mouse_genomes_project 1 169913725 169915967 + MGP_AJ_P0023435 Dedd protein_coding protein_coding MGP_AJ_T0000701.1 MGP_AJ_G0000640.1 mouse_genomes_project 1 157019278 157023345 - TEC TEC MGP_AJ_T0022979.1 MGP_AJ_G0016635.1 mouse_genomes_project 1 160282787 160290526 - MGP_AJ_P0022979 Fasl protein_coding protein_coding MGP_AJ_T0022980.1 MGP_AJ_G0016635.1 mouse_genomes_project 1 160283520 160290389 - MGP_AJ_P0022980 Fasl protein_coding protein_coding MGP_AJ_T0022138.1 MGP_AJ_G0016475.1 mouse_genomes_project 1 132138584 132149593 - MGP_AJ_P0022138 Lax1 protein_coding protein_coding MGP_AJ_T0022139.1 MGP_AJ_G0016475.1 mouse_genomes_project 1 132139954 132149571 - MGP_AJ_P0022139 Lax1 protein_coding protein_coding MGP_AJ_T0000524.1 MGP_AJ_G0000465.1 mouse_genomes_project 1 77710956 77712781 + TEC TEC MGP_AJ_T0019042.1 MGP_AJ_G0015852.1 mouse_genomes_project 1 18183965 18191090 - MGP_AJ_P0019042 Il17f protein_coding protein_coding MGP_AJ_T0019043.1 MGP_AJ_G0015852.1 mouse_genomes_project 1 18184498 18186373 - Il17f protein_coding retained_intron MGP_AJ_T0019044.1 MGP_AJ_G0015852.1 mouse_genomes_project 1 18184602 18197303 - MGP_AJ_P0019044 Il17f protein_coding protein_coding MGP_AJ_T0019045.1 MGP_AJ_G0015852.1 mouse_genomes_project 1 18194295 18197302 - Il17f protein_coding processed_transcript MGP_AJ_T0000799.1 MGP_AJ_G0000735.1 mouse_genomes_project 1 192224104 192224732 + TEC TEC MGP_AJ_T0002837.1 MGP_AJ_G0002680.1 mouse_genomes_project 1 73195190 73198240 + Gm28902 antisense antisense MGP_AJ_T0021179.1 MGP_AJ_G0016259.1 mouse_genomes_project 1 86198504 86330896 + protein_coding retained_intron MGP_AJ_T0021180.1 MGP_AJ_G0016259.1 mouse_genomes_project 1 86198504 86334105 + MGP_AJ_P0021180 protein_coding protein_coding MGP_AJ_T0021181.1 MGP_AJ_G0016259.1 mouse_genomes_project 1 86198570 86329783 + MGP_AJ_P0021181 protein_coding protein_coding MGP_AJ_T0021182.1 MGP_AJ_G0016259.1 mouse_genomes_project 1 86202090 86334105 + MGP_AJ_P0021182 protein_coding protein_coding MGP_AJ_T0019623.1 MGP_AJ_G0015971.1 mouse_genomes_project 1 41807694 41819949 - MGP_AJ_P0019623 Kdelc1 protein_coding protein_coding MGP_AJ_T0019624.1 MGP_AJ_G0015971.1 mouse_genomes_project 1 41808033 41819894 - Kdelc1 protein_coding retained_intron MGP_AJ_T0019625.1 MGP_AJ_G0015971.1 mouse_genomes_project 1 41808035 41819906 - MGP_AJ_P0019625 Kdelc1 protein_coding protein_coding MGP_AJ_T0019626.1 MGP_AJ_G0015971.1 mouse_genomes_project 1 41813230 41819906 - Kdelc1 protein_coding retained_intron MGP_AJ_T0019627.1 MGP_AJ_G0015971.1 mouse_genomes_project 1 41815930 41819842 - MGP_AJ_P0019627 Kdelc1 protein_coding nonsense_mediated_decay MGP_AJ_T0100400.1 MGP_AJ_G0038366.1 mouse_genomes_project 1 8265379 8265470 + Gm22963 snoRNA snoRNA MGP_AJ_T0005823.1 MGP_AJ_G0004882.1 mouse_genomes_project 1 86856984 86858769 + Gm29336 lincRNA lincRNA MGP_AJ_T0005667.1 MGP_AJ_G0004769.1 mouse_genomes_project 1 22428133 22428785 - Gm29414 lincRNA lincRNA MGP_AJ_T0021564.1 MGP_AJ_G0016350.1 mouse_genomes_project 1 103894691 104018412 - MGP_AJ_P0021564 Pign protein_coding protein_coding MGP_AJ_T0021565.1 MGP_AJ_G0016350.1 mouse_genomes_project 1 103894695 104023117 - MGP_AJ_P0021565 Pign protein_coding protein_coding MGP_AJ_T0021566.1 MGP_AJ_G0016350.1 mouse_genomes_project 1 103897424 103940194 - Pign protein_coding processed_transcript MGP_AJ_T0021567.1 MGP_AJ_G0016350.1 mouse_genomes_project 1 103923325 104023098 - MGP_AJ_P0021567 Pign protein_coding protein_coding MGP_AJ_T0021568.1 MGP_AJ_G0016350.1 mouse_genomes_project 1 103927596 104023117 - MGP_AJ_P0021568 Pign protein_coding protein_coding MGP_AJ_T0021569.1 MGP_AJ_G0016350.1 mouse_genomes_project 1 104006019 104023132 - Pign protein_coding retained_intron MGP_AJ_T0021570.1 MGP_AJ_G0016350.1 mouse_genomes_project 1 104006019 104023131 - Pign protein_coding retained_intron MGP_AJ_T0021571.1 MGP_AJ_G0016350.1 mouse_genomes_project 1 104006174 104009047 - Pign protein_coding retained_intron MGP_AJ_T0021572.1 MGP_AJ_G0016350.1 mouse_genomes_project 1 104017662 104023128 - Pign protein_coding retained_intron MGP_AJ_T0021573.1 MGP_AJ_G0016350.1 mouse_genomes_project 1 104018591 104023127 - Pign protein_coding retained_intron MGP_AJ_T0002775.1 MGP_AJ_G0002635.1 mouse_genomes_project 1 33690585 33691652 - Gm37335 antisense antisense MGP_AJ_T0021944.1 MGP_AJ_G0016435.1 mouse_genomes_project 1 129703454 129714211 - Ikbke protein_coding retained_intron MGP_AJ_T0021945.1 MGP_AJ_G0016435.1 mouse_genomes_project 1 129703708 129729259 - MGP_AJ_P0021945 Ikbke protein_coding protein_coding MGP_AJ_T0021946.1 MGP_AJ_G0016435.1 mouse_genomes_project 1 129703713 129726613 - MGP_AJ_P0021946 Ikbke protein_coding protein_coding MGP_AJ_T0021947.1 MGP_AJ_G0016435.1 mouse_genomes_project 1 129708131 129715368 - Ikbke protein_coding retained_intron MGP_AJ_T0021948.1 MGP_AJ_G0016435.1 mouse_genomes_project 1 129712450 129719624 - Ikbke protein_coding retained_intron MGP_AJ_T0021949.1 MGP_AJ_G0016435.1 mouse_genomes_project 1 129719980 129721621 - Ikbke protein_coding retained_intron MGP_AJ_T0021950.1 MGP_AJ_G0016435.1 mouse_genomes_project 1 129722870 129726375 - MGP_AJ_P0021950 Ikbke protein_coding protein_coding MGP_AJ_T0000379.1 MGP_AJ_G0000323.1 mouse_genomes_project 1 10677565 10682138 - TEC TEC MGP_AJ_T0102195.1 MGP_AJ_G0039938.1 mouse_genomes_project 1 172542325 172545491 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0011991.1 MGP_AJ_G0010086.1 mouse_genomes_project 1 42164420 42164729 - processed_pseudogene processed_pseudogene MGP_AJ_T0023775.1 MGP_AJ_G0016837.1 mouse_genomes_project 1 178413363 178432439 - MGP_AJ_P0023775 Tfb2m protein_coding protein_coding MGP_AJ_T0023777.1 MGP_AJ_G0016837.1 mouse_genomes_project 1 178415103 178419839 - Tfb2m protein_coding processed_transcript MGP_AJ_T0023778.1 MGP_AJ_G0016837.1 mouse_genomes_project 1 178415464 178419869 - Tfb2m protein_coding processed_transcript MGP_AJ_T0023779.1 MGP_AJ_G0016837.1 mouse_genomes_project 1 178417499 178432389 - Tfb2m protein_coding processed_transcript MGP_AJ_T0023780.1 MGP_AJ_G0016837.1 mouse_genomes_project 1 178419826 178432064 - Tfb2m protein_coding processed_transcript MGP_AJ_T0019501.1 MGP_AJ_G0015945.1 mouse_genomes_project 1 37344287 37399167 - MGP_AJ_P0019501 Rfx8 protein_coding protein_coding MGP_AJ_T0019502.1 MGP_AJ_G0015945.1 mouse_genomes_project 1 37360023 37371192 - Rfx8 protein_coding processed_transcript MGP_AJ_T0009518.1 MGP_AJ_G0007640.1 mouse_genomes_project 1 91068743 91068809 + Mir149 miRNA miRNA MGP_AJ_T0100469.1 MGP_AJ_G0038435.1 mouse_genomes_project 1 143684991 143685118 - Gm25460 snoRNA snoRNA MGP_AJ_T0009486.1 MGP_AJ_G0007608.1 mouse_genomes_project 1 42989346 42989487 + miRNA miRNA MGP_AJ_T0012315.1 MGP_AJ_G0010410.1 mouse_genomes_project 1 162677417 162677776 + processed_pseudogene processed_pseudogene MGP_AJ_T0002808.1 MGP_AJ_G0002662.1 mouse_genomes_project 1 56911460 56954639 + Gm29018 antisense antisense MGP_AJ_T0002809.1 MGP_AJ_G0002662.1 mouse_genomes_project 1 56929101 56930953 + Gm29018 antisense antisense MGP_AJ_T0021362.1 MGP_AJ_G0016306.1 mouse_genomes_project 1 90860591 90865215 - MGP_AJ_P0021362 Otos protein_coding protein_coding MGP_AJ_T0021363.1 MGP_AJ_G0016306.1 mouse_genomes_project 1 90860592 90864628 - Otos protein_coding retained_intron MGP_AJ_T0021423.1 MGP_AJ_G0016319.1 mouse_genomes_project 1 91517148 91523799 - MGP_AJ_P0021423 Mterf4 protein_coding protein_coding MGP_AJ_T0021424.1 MGP_AJ_G0016319.1 mouse_genomes_project 1 91519150 91523851 - MGP_AJ_P0021424 Mterf4 protein_coding protein_coding MGP_AJ_T0021425.1 MGP_AJ_G0016319.1 mouse_genomes_project 1 91519373 91520839 - Mterf4 protein_coding processed_transcript MGP_AJ_T0021426.1 MGP_AJ_G0016319.1 mouse_genomes_project 1 91519862 91523800 - MGP_AJ_P0021426 Mterf4 protein_coding protein_coding MGP_AJ_T0021427.1 MGP_AJ_G0016319.1 mouse_genomes_project 1 91521434 91523815 - Mterf4 protein_coding retained_intron MGP_AJ_T0021440.1 MGP_AJ_G0016323.1 mouse_genomes_project 1 91623663 91696855 - MGP_AJ_P0021440 Hdlbp protein_coding protein_coding MGP_AJ_T0021441.1 MGP_AJ_G0016323.1 mouse_genomes_project 1 91625485 91663594 - MGP_AJ_P0021441 Hdlbp protein_coding protein_coding MGP_AJ_T0021442.1 MGP_AJ_G0016323.1 mouse_genomes_project 1 91625725 91658704 - MGP_AJ_P0021442 Hdlbp protein_coding protein_coding MGP_AJ_T0021443.1 MGP_AJ_G0016323.1 mouse_genomes_project 1 91646303 91663560 - Hdlbp protein_coding retained_intron MGP_AJ_T0021444.1 MGP_AJ_G0016323.1 mouse_genomes_project 1 91648753 91663590 - MGP_AJ_P0021444 Hdlbp protein_coding protein_coding MGP_AJ_T0021445.1 MGP_AJ_G0016323.1 mouse_genomes_project 1 91649170 91658873 - MGP_AJ_P0021445 Hdlbp protein_coding protein_coding MGP_AJ_T0021446.1 MGP_AJ_G0016323.1 mouse_genomes_project 1 91655031 91663340 - MGP_AJ_P0021446 Hdlbp protein_coding protein_coding MGP_AJ_T0021447.1 MGP_AJ_G0016323.1 mouse_genomes_project 1 91655067 91696869 - MGP_AJ_P0021447 Hdlbp protein_coding protein_coding MGP_AJ_T0021448.1 MGP_AJ_G0016323.1 mouse_genomes_project 1 91658209 91663557 - Hdlbp protein_coding retained_intron MGP_AJ_T0021449.1 MGP_AJ_G0016323.1 mouse_genomes_project 1 91658599 91696431 - MGP_AJ_P0021449 Hdlbp protein_coding protein_coding MGP_AJ_T0021450.1 MGP_AJ_G0016323.1 mouse_genomes_project 1 91693225 91696434 - Hdlbp protein_coding retained_intron MGP_AJ_T0020367.1 MGP_AJ_G0016106.1 mouse_genomes_project 1 68611128 68765324 + MGP_AJ_P0020367 Vwc2l protein_coding protein_coding MGP_AJ_T0020368.1 MGP_AJ_G0016106.1 mouse_genomes_project 1 68611165 68617616 + Vwc2l protein_coding retained_intron MGP_AJ_T0020369.1 MGP_AJ_G0016106.1 mouse_genomes_project 1 68611315 68765309 + MGP_AJ_P0020369 Vwc2l protein_coding protein_coding MGP_AJ_T0020370.1 MGP_AJ_G0016106.1 mouse_genomes_project 1 68611336 68762416 + MGP_AJ_P0020370 Vwc2l protein_coding protein_coding MGP_AJ_T0005804.1 MGP_AJ_G0004867.1 mouse_genomes_project 1 76774320 76775715 + Gm29187 lincRNA lincRNA MGP_AJ_T0005830.1 MGP_AJ_G0004888.1 mouse_genomes_project 1 88350751 88356550 + 4930434B07Rik lincRNA lincRNA MGP_AJ_T0100477.1 MGP_AJ_G0038443.1 mouse_genomes_project 1 159519296 159519358 + Gm22489 snoRNA snoRNA MGP_AJ_T0000750.1 MGP_AJ_G0000689.1 mouse_genomes_project 1 175803442 175805338 - TEC TEC MGP_AJ_T0000562.1 MGP_AJ_G0000503.1 mouse_genomes_project 1 89069057 89069894 - TEC TEC MGP_AJ_T0012115.1 MGP_AJ_G0010210.1 mouse_genomes_project 1 78335725 78337807 - processed_pseudogene processed_pseudogene MGP_AJ_T0000699.1 MGP_AJ_G0000638.1 mouse_genomes_project 1 156843289 156849762 + TEC TEC MGP_AJ_T0002923.1 MGP_AJ_G0002748.1 mouse_genomes_project 1 158747098 158918914 + Gm36975 antisense antisense MGP_AJ_T0005738.1 MGP_AJ_G0004818.1 mouse_genomes_project 1 55022819 55038024 - BC055402 lincRNA lincRNA MGP_AJ_T0102155.1 MGP_AJ_G0039898.1 mouse_genomes_project 1 73439414 73439584 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0009477.1 MGP_AJ_G0007599.1 mouse_genomes_project 1 31719274 31719347 + Mir6896 miRNA miRNA MGP_AJ_T0000550.1 MGP_AJ_G0000491.1 mouse_genomes_project 1 84906364 84908675 + TEC TEC MGP_AJ_T0020978.1 MGP_AJ_G0016217.1 mouse_genomes_project 1 83896866 83911260 + MGP_AJ_P0020978 Itm2c protein_coding protein_coding MGP_AJ_T0020979.1 MGP_AJ_G0016217.1 mouse_genomes_project 1 83897204 83910944 + MGP_AJ_P0020979 Itm2c protein_coding protein_coding MGP_AJ_T0020980.1 MGP_AJ_G0016217.1 mouse_genomes_project 1 83908745 83910376 + Itm2c protein_coding retained_intron MGP_AJ_T0000731.1 MGP_AJ_G0000670.1 mouse_genomes_project 1 164375928 164376927 - TEC TEC MGP_AJ_T0000623.1 MGP_AJ_G0000564.1 mouse_genomes_project 1 129525525 129531394 - TEC TEC MGP_AJ_T0005819.1 MGP_AJ_G0004878.1 mouse_genomes_project 1 85168626 85172736 - Gm29374 lincRNA lincRNA MGP_AJ_T0100480.1 MGP_AJ_G0038446.1 mouse_genomes_project 1 159520425 159520491 + Snord78 snoRNA snoRNA MGP_AJ_T0099116.1 MGP_AJ_G0037087.1 mouse_genomes_project 1 40408930 40454966 + Gm20646 sense_overlapping sense_overlapping MGP_AJ_T0099117.1 MGP_AJ_G0037087.1 mouse_genomes_project 1 40408930 40458789 + Gm20646 sense_overlapping sense_overlapping MGP_AJ_T0022304.1 MGP_AJ_G0016512.1 mouse_genomes_project 1 134323008 134337444 + MGP_AJ_P0022304 Lad1 protein_coding protein_coding MGP_AJ_T0022305.1 MGP_AJ_G0016512.1 mouse_genomes_project 1 134334096 134336809 + Lad1 protein_coding processed_transcript MGP_AJ_T0022306.1 MGP_AJ_G0016512.1 mouse_genomes_project 1 134334635 134336564 + Lad1 protein_coding processed_transcript MGP_AJ_T0100489.1 MGP_AJ_G0038455.1 mouse_genomes_project 1 164079475 164079602 - Gm23208 snoRNA snoRNA MGP_AJ_T0100410.1 MGP_AJ_G0038376.1 mouse_genomes_project 1 18325405 18325536 - Gm24171 snoRNA snoRNA MGP_AJ_T0020221.1 MGP_AJ_G0016078.1 mouse_genomes_project 1 62430462 62456623 + Creb1 protein_coding retained_intron MGP_AJ_T0020222.1 MGP_AJ_G0016078.1 mouse_genomes_project 1 62430467 62477800 + MGP_AJ_P0020222 Creb1 protein_coding protein_coding MGP_AJ_T0020223.1 MGP_AJ_G0016078.1 mouse_genomes_project 1 62430467 62496540 + MGP_AJ_P0020223 Creb1 protein_coding protein_coding MGP_AJ_T0020224.1 MGP_AJ_G0016078.1 mouse_genomes_project 1 62430467 62492662 + MGP_AJ_P0020224 Creb1 protein_coding protein_coding MGP_AJ_T0020225.1 MGP_AJ_G0016078.1 mouse_genomes_project 1 62430490 62474136 + Creb1 protein_coding processed_transcript MGP_AJ_T0020226.1 MGP_AJ_G0016078.1 mouse_genomes_project 1 62430517 62492751 + MGP_AJ_P0020226 Creb1 protein_coding nonsense_mediated_decay MGP_AJ_T0020227.1 MGP_AJ_G0016078.1 mouse_genomes_project 1 62430552 62492761 + MGP_AJ_P0020227 Creb1 protein_coding protein_coding MGP_AJ_T0020228.1 MGP_AJ_G0016078.1 mouse_genomes_project 1 62458228 62459870 + Creb1 protein_coding retained_intron MGP_AJ_T0020229.1 MGP_AJ_G0016078.1 mouse_genomes_project 1 62475410 62478733 + Creb1 protein_coding retained_intron MGP_AJ_T0020230.1 MGP_AJ_G0016079.1 mouse_genomes_project 1 62501756 62512549 - MGP_AJ_P0020230 Mettl21a protein_coding protein_coding MGP_AJ_T0020231.1 MGP_AJ_G0016079.1 mouse_genomes_project 1 62501763 62512475 - MGP_AJ_P0020231 Mettl21a protein_coding protein_coding MGP_AJ_T0020232.1 MGP_AJ_G0016079.1 mouse_genomes_project 1 62503239 62510938 - Mettl21a protein_coding processed_transcript MGP_AJ_T0020233.1 MGP_AJ_G0016079.1 mouse_genomes_project 1 62509508 62512491 - Mettl21a protein_coding processed_transcript MGP_AJ_T0021324.1 MGP_AJ_G0016294.1 mouse_genomes_project 1 89999196 90047473 + MGP_AJ_P0021324 Twist2 protein_coding protein_coding MGP_AJ_T0021325.1 MGP_AJ_G0016294.1 mouse_genomes_project 1 89999205 90001726 + MGP_AJ_P0021325 Twist2 protein_coding protein_coding MGP_AJ_T0023178.1 MGP_AJ_G0016679.1 mouse_genomes_project 1 164300745 164401340 + MGP_AJ_P0023178 Cd247 protein_coding protein_coding MGP_AJ_T0023179.1 MGP_AJ_G0016679.1 mouse_genomes_project 1 164300745 164401340 + MGP_AJ_P0023179 Cd247 protein_coding protein_coding MGP_AJ_T0023180.1 MGP_AJ_G0016679.1 mouse_genomes_project 1 164300745 164401340 + MGP_AJ_P0023180 Cd247 protein_coding protein_coding MGP_AJ_T0023181.1 MGP_AJ_G0016679.1 mouse_genomes_project 1 164300753 164392892 + MGP_AJ_P0023181 Cd247 protein_coding protein_coding MGP_AJ_T0023182.1 MGP_AJ_G0016679.1 mouse_genomes_project 1 164300787 164397623 + MGP_AJ_P0023182 Cd247 protein_coding protein_coding MGP_AJ_T0023183.1 MGP_AJ_G0016679.1 mouse_genomes_project 1 164300829 164399281 + MGP_AJ_P0023183 Cd247 protein_coding nonsense_mediated_decay MGP_AJ_T0023184.1 MGP_AJ_G0016679.1 mouse_genomes_project 1 164300829 164400436 + MGP_AJ_P0023184 Cd247 protein_coding protein_coding MGP_AJ_T0023185.1 MGP_AJ_G0016679.1 mouse_genomes_project 1 164389041 164392381 + Cd247 protein_coding retained_intron MGP_AJ_T0023186.1 MGP_AJ_G0016679.1 mouse_genomes_project 1 164394841 164407464 + Cd247 protein_coding processed_transcript MGP_AJ_T0002879.1 MGP_AJ_G0002714.1 mouse_genomes_project 1 129244294 129258377 - Gm15848 antisense antisense MGP_AJ_T0002880.1 MGP_AJ_G0002714.1 mouse_genomes_project 1 129244520 129254967 - Gm15848 antisense antisense MGP_AJ_T0002881.1 MGP_AJ_G0002714.1 mouse_genomes_project 1 129251694 129254997 - Gm15848 antisense antisense MGP_AJ_T0020870.1 MGP_AJ_G0016197.1 mouse_genomes_project 1 80182009 80184831 + MGP_AJ_P0020870 Gm9747 protein_coding protein_coding MGP_AJ_T0019361.1 MGP_AJ_G0015918.1 mouse_genomes_project 1 34631602 34683399 + MGP_AJ_P0019361 Vwa3b protein_coding protein_coding MGP_AJ_T0019362.1 MGP_AJ_G0015918.1 mouse_genomes_project 1 34634689 34670188 + MGP_AJ_P0019362 Vwa3b protein_coding non_stop_decay MGP_AJ_T0019363.1 MGP_AJ_G0015918.1 mouse_genomes_project 1 34634701 34683398 + MGP_AJ_P0019363 Vwa3b protein_coding protein_coding MGP_AJ_T0019364.1 MGP_AJ_G0015918.1 mouse_genomes_project 1 34634769 34683128 + MGP_AJ_P0019364 Vwa3b protein_coding protein_coding MGP_AJ_T0019365.1 MGP_AJ_G0015918.1 mouse_genomes_project 1 34641038 34796828 + MGP_AJ_P0019365 Vwa3b protein_coding nonsense_mediated_decay MGP_AJ_T0019366.1 MGP_AJ_G0015918.1 mouse_genomes_project 1 34641084 34796988 + MGP_AJ_P0019366 Vwa3b protein_coding unknown_likely_coding MGP_AJ_T0019367.1 MGP_AJ_G0015918.1 mouse_genomes_project 1 34710050 34718612 + Vwa3b protein_coding retained_intron MGP_AJ_T0019368.1 MGP_AJ_G0015918.1 mouse_genomes_project 1 34710187 34738565 + Vwa3b protein_coding processed_transcript MGP_AJ_T0019369.1 MGP_AJ_G0015918.1 mouse_genomes_project 1 34745094 34750934 + MGP_AJ_P0019369 Vwa3b protein_coding protein_coding MGP_AJ_T0019370.1 MGP_AJ_G0015918.1 mouse_genomes_project 1 34763513 34797824 + MGP_AJ_P0019370 Vwa3b protein_coding protein_coding MGP_AJ_T0019371.1 MGP_AJ_G0015918.1 mouse_genomes_project 1 34797073 34797832 + Vwa3b protein_coding retained_intron MGP_AJ_T0012120.1 MGP_AJ_G0010215.1 mouse_genomes_project 1 80730372 80730555 - processed_pseudogene processed_pseudogene MGP_AJ_T0011865.1 MGP_AJ_G0009960.1 mouse_genomes_project 1 4497249 4498261 + processed_pseudogene processed_pseudogene MGP_AJ_T0019135.1 MGP_AJ_G0015877.1 mouse_genomes_project 1 28316467 28381863 - MGP_AJ_P0019135 Phf3 protein_coding protein_coding MGP_AJ_T0019136.1 MGP_AJ_G0015877.1 mouse_genomes_project 1 28316470 28371823 - MGP_AJ_P0019136 Phf3 protein_coding protein_coding MGP_AJ_T0019137.1 MGP_AJ_G0015877.1 mouse_genomes_project 1 28317674 28324817 - MGP_AJ_P0019137 Phf3 protein_coding protein_coding MGP_AJ_T0019138.1 MGP_AJ_G0015877.1 mouse_genomes_project 1 28320318 28323214 - Phf3 protein_coding retained_intron MGP_AJ_T0019139.1 MGP_AJ_G0015877.1 mouse_genomes_project 1 28326008 28327639 - Phf3 protein_coding retained_intron MGP_AJ_T0019140.1 MGP_AJ_G0015877.1 mouse_genomes_project 1 28327668 28381973 - Phf3 protein_coding retained_intron MGP_AJ_T0019141.1 MGP_AJ_G0015877.1 mouse_genomes_project 1 28329390 28382205 - Phf3 protein_coding retained_intron MGP_AJ_T0019142.1 MGP_AJ_G0015877.1 mouse_genomes_project 1 28334904 28382082 - MGP_AJ_P0019142 Phf3 protein_coding nonsense_mediated_decay MGP_AJ_T0019143.1 MGP_AJ_G0015877.1 mouse_genomes_project 1 28335735 28338539 - Phf3 protein_coding retained_intron MGP_AJ_T0019144.1 MGP_AJ_G0015877.1 mouse_genomes_project 1 28339112 28371637 - Phf3 protein_coding processed_transcript MGP_AJ_T0019145.1 MGP_AJ_G0015877.1 mouse_genomes_project 1 28344127 28345442 - Phf3 protein_coding retained_intron MGP_AJ_T0019146.1 MGP_AJ_G0015877.1 mouse_genomes_project 1 28345903 28382178 - MGP_AJ_P0019146 Phf3 protein_coding protein_coding MGP_AJ_T0019147.1 MGP_AJ_G0015877.1 mouse_genomes_project 1 28371636 28381530 - MGP_AJ_P0019147 Phf3 protein_coding protein_coding MGP_AJ_T0019148.1 MGP_AJ_G0015877.1 mouse_genomes_project 1 28380932 28381753 - Phf3 protein_coding retained_intron MGP_AJ_T0022514.1 MGP_AJ_G0016556.1 mouse_genomes_project 1 148721385 148735850 + MGP_AJ_P0022514 Pdc protein_coding protein_coding MGP_AJ_T0022515.1 MGP_AJ_G0016556.1 mouse_genomes_project 1 148721385 148735849 + MGP_AJ_P0022515 Pdc protein_coding protein_coding MGP_AJ_T0022516.1 MGP_AJ_G0016556.1 mouse_genomes_project 1 148721394 148735262 + MGP_AJ_P0022516 Pdc protein_coding protein_coding MGP_AJ_T0022517.1 MGP_AJ_G0016556.1 mouse_genomes_project 1 148721397 148735847 + MGP_AJ_P0022517 Pdc protein_coding protein_coding MGP_AJ_T0009502.1 MGP_AJ_G0007624.1 mouse_genomes_project 1 72366410 72366495 + Mir26b miRNA miRNA MGP_AJ_T0024223.1 MGP_AJ_G0016927.1 mouse_genomes_project 1 190733486 190745139 + MGP_AJ_P0024223 Nek2 protein_coding protein_coding MGP_AJ_T0024224.1 MGP_AJ_G0016927.1 mouse_genomes_project 1 190733552 190740382 + Nek2 protein_coding retained_intron MGP_AJ_T0024225.1 MGP_AJ_G0016927.1 mouse_genomes_project 1 190734224 190737913 + Nek2 protein_coding retained_intron MGP_AJ_T0024226.1 MGP_AJ_G0016927.1 mouse_genomes_project 1 190739235 190742078 + Nek2 protein_coding processed_transcript MGP_AJ_T0100424.1 MGP_AJ_G0038390.1 mouse_genomes_project 1 50860449 50860550 + Gm24349 snoRNA snoRNA MGP_AJ_T0022434.1 MGP_AJ_G0016537.1 mouse_genomes_project 1 137988395 138010871 + MGP_AJ_P0022434 F13b protein_coding protein_coding MGP_AJ_T0022435.1 MGP_AJ_G0016537.1 mouse_genomes_project 1 138003509 138005019 + F13b protein_coding processed_transcript MGP_AJ_T0020768.1 MGP_AJ_G0016176.1 mouse_genomes_project 1 73450913 73467442 + MGP_AJ_P0020768 Stk11ip protein_coding protein_coding MGP_AJ_T0020769.1 MGP_AJ_G0016176.1 mouse_genomes_project 1 73450936 73467045 + MGP_AJ_P0020769 Stk11ip protein_coding protein_coding MGP_AJ_T0020770.1 MGP_AJ_G0016176.1 mouse_genomes_project 1 73451175 73467048 + Stk11ip protein_coding retained_intron MGP_AJ_T0020771.1 MGP_AJ_G0016176.1 mouse_genomes_project 1 73451195 73457205 + Stk11ip protein_coding retained_intron MGP_AJ_T0020772.1 MGP_AJ_G0016176.1 mouse_genomes_project 1 73458397 73459582 + Stk11ip protein_coding retained_intron MGP_AJ_T0020773.1 MGP_AJ_G0016176.1 mouse_genomes_project 1 73458732 73467048 + Stk11ip protein_coding retained_intron MGP_AJ_T0020774.1 MGP_AJ_G0016176.1 mouse_genomes_project 1 73459772 73462441 + Stk11ip protein_coding retained_intron MGP_AJ_T0020775.1 MGP_AJ_G0016176.1 mouse_genomes_project 1 73462634 73464361 + Stk11ip protein_coding retained_intron MGP_AJ_T0020776.1 MGP_AJ_G0016176.1 mouse_genomes_project 1 73463141 73463888 + Stk11ip protein_coding processed_transcript MGP_AJ_T0000403.1 MGP_AJ_G0000345.1 mouse_genomes_project 1 22706785 22710160 - TEC TEC MGP_AJ_T0000670.1 MGP_AJ_G0000609.1 mouse_genomes_project 1 145874930 145879332 + TEC TEC MGP_AJ_T0022169.1 MGP_AJ_G0016483.1 mouse_genomes_project 1 132654918 132662635 + MGP_AJ_P0022169 Mybph protein_coding protein_coding MGP_AJ_T0022170.1 MGP_AJ_G0016483.1 mouse_genomes_project 1 132654927 132662636 + MGP_AJ_P0022170 Mybph protein_coding protein_coding MGP_AJ_T0000534.1 MGP_AJ_G0000475.1 mouse_genomes_project 1 80308256 80311089 + TEC TEC MGP_AJ_T0012282.1 MGP_AJ_G0010377.1 mouse_genomes_project 1 149512348 149513268 + processed_pseudogene processed_pseudogene MGP_AJ_T0100481.1 MGP_AJ_G0038447.1 mouse_genomes_project 1 159520795 159520879 + Mir5117 snoRNA snoRNA MGP_AJ_T0009507.1 MGP_AJ_G0007629.1 mouse_genomes_project 1 75435930 75436046 - Mir6352 miRNA miRNA MGP_AJ_T0102139.1 MGP_AJ_G0039883.1 mouse_genomes_project 1 15585366 15598841 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0005848.1 MGP_AJ_G0004905.1 mouse_genomes_project 1 93946395 93961986 - 4930598F16Rik lincRNA lincRNA MGP_AJ_T0005779.1 MGP_AJ_G0004849.1 mouse_genomes_project 1 70002154 70018484 - Gm4319 lincRNA lincRNA MGP_AJ_T0011251.1 MGP_AJ_G0009373.1 mouse_genomes_project 1 83776456 83776707 + Gm22906 misc_RNA misc_RNA MGP_AJ_T0012127.1 MGP_AJ_G0010222.1 mouse_genomes_project 1 81292782 81293570 + processed_pseudogene processed_pseudogene MGP_AJ_T0022161.1 MGP_AJ_G0016482.1 mouse_genomes_project 1 132642571 132651507 + MGP_AJ_P0022161 Chil1 protein_coding protein_coding MGP_AJ_T0022162.1 MGP_AJ_G0016482.1 mouse_genomes_project 1 132642799 132651500 + MGP_AJ_P0022162 Chil1 protein_coding protein_coding MGP_AJ_T0022163.1 MGP_AJ_G0016482.1 mouse_genomes_project 1 132642799 132651652 + MGP_AJ_P0022163 Chil1 protein_coding protein_coding MGP_AJ_T0022164.1 MGP_AJ_G0016482.1 mouse_genomes_project 1 132642869 132648022 + MGP_AJ_P0022164 Chil1 protein_coding protein_coding MGP_AJ_T0022165.1 MGP_AJ_G0016482.1 mouse_genomes_project 1 132642876 132648032 + MGP_AJ_P0022165 Chil1 protein_coding protein_coding MGP_AJ_T0022166.1 MGP_AJ_G0016482.1 mouse_genomes_project 1 132642877 132648309 + Chil1 protein_coding retained_intron MGP_AJ_T0022167.1 MGP_AJ_G0016482.1 mouse_genomes_project 1 132644196 132648091 + Chil1 protein_coding retained_intron MGP_AJ_T0022168.1 MGP_AJ_G0016482.1 mouse_genomes_project 1 132650596 132651498 + Chil1 protein_coding retained_intron MGP_AJ_T0012297.1 MGP_AJ_G0010392.1 mouse_genomes_project 1 154363197 154363503 + processed_pseudogene processed_pseudogene MGP_AJ_T0006040.1 MGP_AJ_G0005055.1 mouse_genomes_project 1 184324314 184332764 - Gm2061 lincRNA lincRNA MGP_AJ_T0002854.1 MGP_AJ_G0002696.1 mouse_genomes_project 1 91060363 91067137 - Gm29480 antisense antisense MGP_AJ_T0005964.1 MGP_AJ_G0004996.1 mouse_genomes_project 1 159318104 159318568 + Gm38060 lincRNA lincRNA MGP_AJ_T0012244.1 MGP_AJ_G0010339.1 mouse_genomes_project 1 134373675 134374044 + processed_pseudogene processed_pseudogene MGP_AJ_T0021532.1 MGP_AJ_G0016344.1 mouse_genomes_project 1 96057604 96079614 + MGP_AJ_P0021532 Gin1 protein_coding protein_coding MGP_AJ_T0021533.1 MGP_AJ_G0016344.1 mouse_genomes_project 1 96057611 96065742 + MGP_AJ_P0021533 Gin1 protein_coding protein_coding MGP_AJ_T0021534.1 MGP_AJ_G0016344.1 mouse_genomes_project 1 96057629 96080354 + MGP_AJ_P0021534 Gin1 protein_coding protein_coding MGP_AJ_T0021535.1 MGP_AJ_G0016344.1 mouse_genomes_project 1 96057633 96058438 + Gin1 protein_coding processed_transcript MGP_AJ_T0021536.1 MGP_AJ_G0016344.1 mouse_genomes_project 1 96057642 96079651 + MGP_AJ_P0021536 Gin1 protein_coding nonsense_mediated_decay MGP_AJ_T0021537.1 MGP_AJ_G0016344.1 mouse_genomes_project 1 96061249 96063643 + Gin1 protein_coding retained_intron MGP_AJ_T0021538.1 MGP_AJ_G0016344.1 mouse_genomes_project 1 96065001 96069716 + MGP_AJ_P0021538 Gin1 protein_coding nonsense_mediated_decay MGP_AJ_T0011920.1 MGP_AJ_G0010015.1 mouse_genomes_project 1 20370813 20373078 - processed_pseudogene processed_pseudogene MGP_AJ_T0100486.1 MGP_AJ_G0038452.1 mouse_genomes_project 1 161560845 161560979 - Gm22671 snoRNA snoRNA MGP_AJ_T0019880.1 MGP_AJ_G0016019.1 mouse_genomes_project 1 53222258 53579042 + MGP_AJ_P0019880 Plcl1 protein_coding protein_coding MGP_AJ_T0019881.1 MGP_AJ_G0016019.1 mouse_genomes_project 1 53526832 53559977 + Plcl1 protein_coding processed_transcript MGP_AJ_T0005791.1 MGP_AJ_G0004856.1 mouse_genomes_project 1 71581829 71831293 - 6030407O03Rik lincRNA lincRNA MGP_AJ_T0005792.1 MGP_AJ_G0004856.1 mouse_genomes_project 1 71581829 71701769 - 6030407O03Rik lincRNA lincRNA MGP_AJ_T0024143.1 MGP_AJ_G0016910.1 mouse_genomes_project 1 189003363 189056700 - MGP_AJ_P0024143 Prox1 protein_coding protein_coding MGP_AJ_T0024144.1 MGP_AJ_G0016910.1 mouse_genomes_project 1 189007781 189055379 - MGP_AJ_P0024144 Prox1 protein_coding protein_coding MGP_AJ_T0024145.1 MGP_AJ_G0016910.1 mouse_genomes_project 1 189008338 189056666 - MGP_AJ_P0024145 Prox1 protein_coding protein_coding MGP_AJ_T0000545.1 MGP_AJ_G0000486.1 mouse_genomes_project 1 84599362 84600537 + TEC TEC MGP_AJ_T0024117.1 MGP_AJ_G0016906.1 mouse_genomes_project 1 188087564 188229757 - MGP_AJ_P0024117 Kcnk2 protein_coding protein_coding MGP_AJ_T0024118.1 MGP_AJ_G0016906.1 mouse_genomes_project 1 188087571 188288621 - MGP_AJ_P0024118 Kcnk2 protein_coding nonsense_mediated_decay MGP_AJ_T0024119.1 MGP_AJ_G0016906.1 mouse_genomes_project 1 188087571 188229397 - MGP_AJ_P0024119 Kcnk2 protein_coding protein_coding MGP_AJ_T0024120.1 MGP_AJ_G0016906.1 mouse_genomes_project 1 188089378 188288566 - MGP_AJ_P0024120 Kcnk2 protein_coding protein_coding MGP_AJ_T0024121.1 MGP_AJ_G0016906.1 mouse_genomes_project 1 188089387 188288561 - MGP_AJ_P0024121 Kcnk2 protein_coding protein_coding MGP_AJ_T0024122.1 MGP_AJ_G0016906.1 mouse_genomes_project 1 188089424 188228920 - MGP_AJ_P0024122 Kcnk2 protein_coding protein_coding MGP_AJ_T0024123.1 MGP_AJ_G0016906.1 mouse_genomes_project 1 188089424 188229272 - MGP_AJ_P0024123 Kcnk2 protein_coding protein_coding MGP_AJ_T0024124.1 MGP_AJ_G0016906.1 mouse_genomes_project 1 188089659 188094971 - Kcnk2 protein_coding processed_transcript MGP_AJ_T0024125.1 MGP_AJ_G0016906.1 mouse_genomes_project 1 188089696 188125998 - Kcnk2 protein_coding processed_transcript MGP_AJ_T0024126.1 MGP_AJ_G0016906.1 mouse_genomes_project 1 188225255 188232544 - Kcnk2 protein_coding processed_transcript MGP_AJ_T0020372.1 MGP_AJ_G0016108.1 mouse_genomes_project 1 69129575 69300933 - MGP_AJ_P0020372 Abca12 protein_coding protein_coding MGP_AJ_T0020373.1 MGP_AJ_G0016108.1 mouse_genomes_project 1 69174370 69191500 - Abca12 protein_coding retained_intron MGP_AJ_T0020374.1 MGP_AJ_G0016108.1 mouse_genomes_project 1 69197131 69300933 - Abca12 protein_coding retained_intron MGP_AJ_T0020375.1 MGP_AJ_G0016108.1 mouse_genomes_project 1 69217541 69220694 - Abca12 protein_coding retained_intron MGP_AJ_T0020376.1 MGP_AJ_G0016108.1 mouse_genomes_project 1 69246518 69300919 - Abca12 protein_coding retained_intron MGP_AJ_T0024139.1 MGP_AJ_G0016909.1 mouse_genomes_project 1 188758755 188808355 - MGP_AJ_P0024139 Smyd2 protein_coding protein_coding MGP_AJ_T0024140.1 MGP_AJ_G0016909.1 mouse_genomes_project 1 188758757 188767266 - Smyd2 protein_coding processed_transcript MGP_AJ_T0024141.1 MGP_AJ_G0016909.1 mouse_genomes_project 1 188758905 188760636 - Smyd2 protein_coding retained_intron MGP_AJ_T0024142.1 MGP_AJ_G0016909.1 mouse_genomes_project 1 188763309 188808245 - Smyd2 protein_coding retained_intron MGP_AJ_T0023600.1 MGP_AJ_G0016779.1 mouse_genomes_project 1 171748371 171749434 - MGP_AJ_P0023600 Olfr1406 protein_coding protein_coding MGP_AJ_T0023601.1 MGP_AJ_G0016779.1 mouse_genomes_project 1 171749098 171755574 - MGP_AJ_P0023601 Olfr1406 protein_coding protein_coding MGP_AJ_T0022640.1 MGP_AJ_G0016577.1 mouse_genomes_project 1 151650575 151764723 - MGP_AJ_P0022640 Lamc1 protein_coding protein_coding MGP_AJ_T0022641.1 MGP_AJ_G0016577.1 mouse_genomes_project 1 151650575 151660797 - MGP_AJ_P0022641 Lamc1 protein_coding protein_coding MGP_AJ_T0022642.1 MGP_AJ_G0016577.1 mouse_genomes_project 1 151660413 151661071 - Lamc1 protein_coding retained_intron MGP_AJ_T0022643.1 MGP_AJ_G0016577.1 mouse_genomes_project 1 151660467 151670979 - MGP_AJ_P0022643 Lamc1 protein_coding nonsense_mediated_decay MGP_AJ_T0022644.1 MGP_AJ_G0016577.1 mouse_genomes_project 1 151680273 151682118 - Lamc1 protein_coding retained_intron MGP_AJ_T0021364.1 MGP_AJ_G0016307.1 mouse_genomes_project 1 91049831 91079145 + MGP_AJ_P0021364 Gpc1 protein_coding protein_coding MGP_AJ_T0021365.1 MGP_AJ_G0016307.1 mouse_genomes_project 1 91050155 91053864 + Gpc1 protein_coding processed_transcript MGP_AJ_T0021366.1 MGP_AJ_G0016307.1 mouse_genomes_project 1 91071563 91074334 + Gpc1 protein_coding retained_intron MGP_AJ_T0021367.1 MGP_AJ_G0016307.1 mouse_genomes_project 1 91074927 91075888 + Gpc1 protein_coding retained_intron MGP_AJ_T0021368.1 MGP_AJ_G0016307.1 mouse_genomes_project 1 91075133 91075961 + Gpc1 protein_coding retained_intron MGP_AJ_T0100428.1 MGP_AJ_G0038394.1 mouse_genomes_project 1 57597707 57597794 + Snord70 snoRNA snoRNA MGP_AJ_T0023667.1 MGP_AJ_G0016813.1 mouse_genomes_project 1 173625238 173720947 - MGP_AJ_P0023667 Grem2 protein_coding protein_coding MGP_AJ_T0000689.1 MGP_AJ_G0000628.1 mouse_genomes_project 1 154755264 154755901 - TEC TEC MGP_AJ_T0021159.1 MGP_AJ_G0016253.1 mouse_genomes_project 1 85981184 86013517 - MGP_AJ_P0021159 Usp40 protein_coding nonsense_mediated_decay MGP_AJ_T0021160.1 MGP_AJ_G0016253.1 mouse_genomes_project 1 85981186 86046422 - MGP_AJ_P0021160 Usp40 protein_coding protein_coding MGP_AJ_T0021161.1 MGP_AJ_G0016253.1 mouse_genomes_project 1 85982510 86046405 - MGP_AJ_P0021161 Usp40 protein_coding nonsense_mediated_decay MGP_AJ_T0021162.1 MGP_AJ_G0016253.1 mouse_genomes_project 1 85982510 86046405 - MGP_AJ_P0021162 Usp40 protein_coding protein_coding MGP_AJ_T0021163.1 MGP_AJ_G0016253.1 mouse_genomes_project 1 85985769 85987744 - Usp40 protein_coding retained_intron MGP_AJ_T0021164.1 MGP_AJ_G0016253.1 mouse_genomes_project 1 86001582 86003754 - Usp40 protein_coding retained_intron MGP_AJ_T0021165.1 MGP_AJ_G0016253.1 mouse_genomes_project 1 86023364 86046399 - Usp40 protein_coding retained_intron MGP_AJ_T0021166.1 MGP_AJ_G0016253.1 mouse_genomes_project 1 86043794 86046421 - Usp40 protein_coding retained_intron MGP_AJ_T0021167.1 MGP_AJ_G0016253.1 mouse_genomes_project 1 86043794 86046100 - Usp40 protein_coding retained_intron MGP_AJ_T0020419.1 MGP_AJ_G0016118.1 mouse_genomes_project 1 70658535 70661086 + MGP_AJ_P0020419 Rpl37a protein_coding protein_coding MGP_AJ_T0100494.1 MGP_AJ_G0038460.1 mouse_genomes_project 1 187493149 187493280 - Gm25095 snoRNA snoRNA MGP_AJ_T0023131.1 MGP_AJ_G0016670.1 mouse_genomes_project 1 163687432 163707564 - MGP_AJ_P0023131 Sft2d2 protein_coding protein_coding MGP_AJ_T0023132.1 MGP_AJ_G0016670.1 mouse_genomes_project 1 163688966 163707447 - MGP_AJ_P0023132 Sft2d2 protein_coding nonsense_mediated_decay MGP_AJ_T0023133.1 MGP_AJ_G0016670.1 mouse_genomes_project 1 163692333 163707443 - MGP_AJ_P0023133 Sft2d2 protein_coding nonsense_mediated_decay MGP_AJ_T0023330.1 MGP_AJ_G0016718.1 mouse_genomes_project 1 169500101 169517667 - MGP_AJ_P0023330 Fcgr2b protein_coding protein_coding MGP_AJ_T0023331.1 MGP_AJ_G0016718.1 mouse_genomes_project 1 169502449 169517667 - MGP_AJ_P0023331 Fcgr2b protein_coding protein_coding MGP_AJ_T0023332.1 MGP_AJ_G0016718.1 mouse_genomes_project 1 169502623 169503520 - Fcgr2b protein_coding processed_transcript MGP_AJ_T0023333.1 MGP_AJ_G0016718.1 mouse_genomes_project 1 169502658 169518087 - MGP_AJ_P0023333 Fcgr2b protein_coding protein_coding MGP_AJ_T0023334.1 MGP_AJ_G0016718.1 mouse_genomes_project 1 169502882 169517667 - MGP_AJ_P0023334 Fcgr2b protein_coding protein_coding MGP_AJ_T0023335.1 MGP_AJ_G0016718.1 mouse_genomes_project 1 169506199 169517667 - Fcgr2b protein_coding retained_intron MGP_AJ_T0023336.1 MGP_AJ_G0016718.1 mouse_genomes_project 1 169511118 169517667 - Fcgr2b protein_coding retained_intron MGP_AJ_T0023632.1 MGP_AJ_G0016792.1 mouse_genomes_project 1 172455141 172510638 - Ifi203 protein_coding processed_transcript MGP_AJ_T0023633.1 MGP_AJ_G0016792.1 mouse_genomes_project 1 172455251 172653559 - MGP_AJ_P0023633 Ifi203 protein_coding protein_coding MGP_AJ_T0023639.1 MGP_AJ_G0016792.1 mouse_genomes_project 1 172637350 172653559 - Ifi203 protein_coding processed_transcript MGP_AJ_T0000381.1 MGP_AJ_G0000325.1 mouse_genomes_project 1 10967404 10968639 - TEC TEC MGP_AJ_T0022487.1 MGP_AJ_G0016549.1 mouse_genomes_project 1 142572673 142612986 - MGP_AJ_P0022487 Rgs13 protein_coding protein_coding MGP_AJ_T0022488.1 MGP_AJ_G0016549.1 mouse_genomes_project 1 142572686 142612889 - MGP_AJ_P0022488 Rgs13 protein_coding protein_coding MGP_AJ_T0005951.1 MGP_AJ_G0004987.1 mouse_genomes_project 1 153489750 153537619 - Gm29282 lincRNA lincRNA MGP_AJ_T0100433.1 MGP_AJ_G0038399.1 mouse_genomes_project 1 61078339 61078417 + Gm26457 snoRNA snoRNA MGP_AJ_T0011980.1 MGP_AJ_G0010075.1 mouse_genomes_project 1 38558175 38558671 - processed_pseudogene processed_pseudogene MGP_AJ_T0005673.1 MGP_AJ_G0004775.1 mouse_genomes_project 1 31932627 31933502 - Gm37958 lincRNA lincRNA MGP_AJ_T0020149.1 MGP_AJ_G0016064.1 mouse_genomes_project 1 58894832 58912502 + MGP_AJ_P0020149 Icos protein_coding protein_coding MGP_AJ_T0020150.1 MGP_AJ_G0016064.1 mouse_genomes_project 1 58894832 58918414 + MGP_AJ_P0020150 Icos protein_coding protein_coding MGP_AJ_T0018772.1 MGP_AJ_G0015801.1 mouse_genomes_project 1 3506924 3542609 + MGP_AJ_P0018772 Fam150a protein_coding protein_coding MGP_AJ_T0000756.1 MGP_AJ_G0000695.1 mouse_genomes_project 1 176413216 176414447 - TEC TEC MGP_AJ_T0009533.1 MGP_AJ_G0007655.1 mouse_genomes_project 1 132186775 132186863 - Mir6903 miRNA miRNA MGP_AJ_T0012017.1 MGP_AJ_G0010112.1 mouse_genomes_project 1 47253221 47253661 + processed_pseudogene processed_pseudogene MGP_AJ_T0009510.1 MGP_AJ_G0007632.1 mouse_genomes_project 1 82183362 82183475 - Mir6353 miRNA miRNA MGP_AJ_T0012217.1 MGP_AJ_G0010312.1 mouse_genomes_project 1 119877446 119877665 - processed_pseudogene processed_pseudogene MGP_AJ_T0005681.1 MGP_AJ_G0004782.1 mouse_genomes_project 1 33591037 33599280 - Gm33222 lincRNA lincRNA MGP_AJ_T0005682.1 MGP_AJ_G0004782.1 mouse_genomes_project 1 33591120 33599226 - Gm33222 lincRNA lincRNA MGP_AJ_T0005752.1 MGP_AJ_G0004830.1 mouse_genomes_project 1 59541601 59546231 - 4930587A21Rik lincRNA lincRNA MGP_AJ_T0002977.1 MGP_AJ_G0002791.1 mouse_genomes_project 1 185837795 185840874 - Gm37912 antisense antisense MGP_AJ_T0021974.1 MGP_AJ_G0016441.1 mouse_genomes_project 1 130183327 130210730 + MGP_AJ_P0021974 Slc26a9 protein_coding protein_coding MGP_AJ_T0021975.1 MGP_AJ_G0016441.1 mouse_genomes_project 1 130183343 130203233 + MGP_AJ_P0021975 Slc26a9 protein_coding nonsense_mediated_decay MGP_AJ_T0021976.1 MGP_AJ_G0016441.1 mouse_genomes_project 1 130189688 130190393 + Slc26a9 protein_coding retained_intron MGP_AJ_T0021977.1 MGP_AJ_G0016441.1 mouse_genomes_project 1 130189796 130193293 + MGP_AJ_P0021977 Slc26a9 protein_coding protein_coding MGP_AJ_T0000549.1 MGP_AJ_G0000490.1 mouse_genomes_project 1 84864550 84867334 + TEC TEC MGP_AJ_T0012086.1 MGP_AJ_G0010181.1 mouse_genomes_project 1 63959569 63959907 + processed_pseudogene processed_pseudogene MGP_AJ_T0005940.1 MGP_AJ_G0004979.1 mouse_genomes_project 1 150180032 150186103 - 2810414N06Rik lincRNA lincRNA MGP_AJ_T0099119.1 MGP_AJ_G0037089.1 mouse_genomes_project 1 188090021 188090767 - 2900042K21Rik sense_overlapping sense_overlapping MGP_AJ_T0022773.1 MGP_AJ_G0016601.1 mouse_genomes_project 1 154579446 154666442 - MGP_AJ_P0022773 Fam163a protein_coding protein_coding MGP_AJ_T0023068.1 MGP_AJ_G0016652.1 mouse_genomes_project 1 161896203 161914965 - MGP_AJ_P0023068 Gorab protein_coding protein_coding MGP_AJ_T0023069.1 MGP_AJ_G0016652.1 mouse_genomes_project 1 161896207 161914952 - MGP_AJ_P0023069 Gorab protein_coding nonsense_mediated_decay MGP_AJ_T0023070.1 MGP_AJ_G0016652.1 mouse_genomes_project 1 161905711 161914907 - Gorab protein_coding retained_intron MGP_AJ_T0020327.1 MGP_AJ_G0016099.1 mouse_genomes_project 1 64719105 64749656 - MGP_AJ_P0020327 Acadl protein_coding protein_coding MGP_AJ_T0020328.1 MGP_AJ_G0016099.1 mouse_genomes_project 1 64732128 64744729 - Acadl protein_coding processed_transcript MGP_AJ_T0020694.1 MGP_AJ_G0016166.1 mouse_genomes_project 1 73194784 73201084 - MGP_AJ_P0020694 Resp18 protein_coding protein_coding MGP_AJ_T0020695.1 MGP_AJ_G0016166.1 mouse_genomes_project 1 73194786 73196851 - Resp18 protein_coding retained_intron MGP_AJ_T0020696.1 MGP_AJ_G0016166.1 mouse_genomes_project 1 73194896 73200985 - MGP_AJ_P0020696 Resp18 protein_coding nonsense_mediated_decay MGP_AJ_T0020697.1 MGP_AJ_G0016166.1 mouse_genomes_project 1 73196657 73200953 - Resp18 protein_coding retained_intron MGP_AJ_T0009550.1 MGP_AJ_G0007672.1 mouse_genomes_project 1 165849359 165849415 - Gm25911 miRNA miRNA MGP_AJ_T0012226.1 MGP_AJ_G0010321.1 mouse_genomes_project 1 121656332 121656581 + processed_pseudogene processed_pseudogene MGP_AJ_T0012025.1 MGP_AJ_G0010120.1 mouse_genomes_project 1 50064491 50065890 - processed_pseudogene processed_pseudogene MGP_AJ_T0021085.1 MGP_AJ_G0016244.1 mouse_genomes_project 1 85361022 85390917 + Gigyf2 protein_coding processed_transcript MGP_AJ_T0021086.1 MGP_AJ_G0016244.1 mouse_genomes_project 1 85361027 85488013 + MGP_AJ_P0021086 Gigyf2 protein_coding protein_coding MGP_AJ_T0021087.1 MGP_AJ_G0016244.1 mouse_genomes_project 1 85361053 85486361 + MGP_AJ_P0021087 Gigyf2 protein_coding protein_coding MGP_AJ_T0021088.1 MGP_AJ_G0016244.1 mouse_genomes_project 1 85361054 85392979 + Gigyf2 protein_coding processed_transcript MGP_AJ_T0021089.1 MGP_AJ_G0016244.1 mouse_genomes_project 1 85361057 85462500 + MGP_AJ_P0021089 Gigyf2 protein_coding protein_coding MGP_AJ_T0021090.1 MGP_AJ_G0016244.1 mouse_genomes_project 1 85361070 85363032 + Gigyf2 protein_coding retained_intron MGP_AJ_T0021091.1 MGP_AJ_G0016244.1 mouse_genomes_project 1 85361072 85428308 + Gigyf2 protein_coding processed_transcript MGP_AJ_T0021092.1 MGP_AJ_G0016244.1 mouse_genomes_project 1 85361090 85471117 + MGP_AJ_P0021092 Gigyf2 protein_coding protein_coding MGP_AJ_T0021093.1 MGP_AJ_G0016244.1 mouse_genomes_project 1 85389640 85486361 + MGP_AJ_P0021093 Gigyf2 protein_coding nonsense_mediated_decay MGP_AJ_T0021094.1 MGP_AJ_G0016244.1 mouse_genomes_project 1 85389640 85486361 + MGP_AJ_P0021094 Gigyf2 protein_coding protein_coding MGP_AJ_T0021095.1 MGP_AJ_G0016244.1 mouse_genomes_project 1 85399682 85416400 + Gigyf2 protein_coding retained_intron MGP_AJ_T0021096.1 MGP_AJ_G0016244.1 mouse_genomes_project 1 85400042 85401537 + Gigyf2 protein_coding retained_intron MGP_AJ_T0021097.1 MGP_AJ_G0016244.1 mouse_genomes_project 1 85423741 85444719 + Gigyf2 protein_coding processed_transcript MGP_AJ_T0021098.1 MGP_AJ_G0016244.1 mouse_genomes_project 1 85423762 85444450 + MGP_AJ_P0021098 Gigyf2 protein_coding protein_coding MGP_AJ_T0021101.1 MGP_AJ_G0016244.1 mouse_genomes_project 1 85441077 85479246 + MGP_AJ_P0021101 Gigyf2 protein_coding nonsense_mediated_decay MGP_AJ_T0021102.1 MGP_AJ_G0016244.1 mouse_genomes_project 1 85441136 85445108 + MGP_AJ_P0021102 Gigyf2 protein_coding protein_coding MGP_AJ_T0021103.1 MGP_AJ_G0016244.1 mouse_genomes_project 1 85442322 85445018 + MGP_AJ_P0021103 Gigyf2 protein_coding protein_coding MGP_AJ_T0021104.1 MGP_AJ_G0016244.1 mouse_genomes_project 1 85442354 85448109 + MGP_AJ_P0021104 Gigyf2 protein_coding nonsense_mediated_decay MGP_AJ_T0021105.1 MGP_AJ_G0016244.1 mouse_genomes_project 1 85442370 85444773 + MGP_AJ_P0021105 Gigyf2 protein_coding protein_coding MGP_AJ_T0021106.1 MGP_AJ_G0016244.1 mouse_genomes_project 1 85444785 85457732 + MGP_AJ_P0021106 Gigyf2 protein_coding protein_coding MGP_AJ_T0021107.1 MGP_AJ_G0016244.1 mouse_genomes_project 1 85457600 85459181 + Gigyf2 protein_coding retained_intron MGP_AJ_T0021108.1 MGP_AJ_G0016244.1 mouse_genomes_project 1 85470437 85488013 + Gigyf2 protein_coding processed_transcript MGP_AJ_T0021109.1 MGP_AJ_G0016244.1 mouse_genomes_project 1 85480543 85486424 + Gigyf2 protein_coding retained_intron MGP_AJ_T0098869.1 MGP_AJ_G0036853.1 mouse_genomes_project 1 67561192 67563057 - Gm28112 sense_intronic sense_intronic MGP_AJ_T0019994.1 MGP_AJ_G0016040.1 mouse_genomes_project 1 56569515 56573199 + Cflar protein_coding processed_transcript MGP_AJ_T0019995.1 MGP_AJ_G0016040.1 mouse_genomes_project 1 56569515 56614110 + Cflar protein_coding processed_transcript MGP_AJ_T0019996.1 MGP_AJ_G0016040.1 mouse_genomes_project 1 56569523 56573616 + Cflar protein_coding processed_transcript MGP_AJ_T0019997.1 MGP_AJ_G0016040.1 mouse_genomes_project 1 56569541 56573202 + Cflar protein_coding processed_transcript MGP_AJ_T0019998.1 MGP_AJ_G0016040.1 mouse_genomes_project 1 56569551 56576804 + Cflar protein_coding processed_transcript MGP_AJ_T0019999.1 MGP_AJ_G0016040.1 mouse_genomes_project 1 56569567 56619785 + MGP_AJ_P0019999 Cflar protein_coding protein_coding MGP_AJ_T0020000.1 MGP_AJ_G0016040.1 mouse_genomes_project 1 56572606 56592465 + MGP_AJ_P0020000 Cflar protein_coding protein_coding MGP_AJ_T0020001.1 MGP_AJ_G0016040.1 mouse_genomes_project 1 56572614 56582320 + Cflar protein_coding processed_transcript MGP_AJ_T0020002.1 MGP_AJ_G0016040.1 mouse_genomes_project 1 56572629 56614934 + MGP_AJ_P0020002 Cflar protein_coding protein_coding MGP_AJ_T0020003.1 MGP_AJ_G0016040.1 mouse_genomes_project 1 56573198 56576812 + Cflar protein_coding retained_intron MGP_AJ_T0020004.1 MGP_AJ_G0016040.1 mouse_genomes_project 1 56588433 56613691 + MGP_AJ_P0020004 Cflar protein_coding protein_coding MGP_AJ_T0020005.1 MGP_AJ_G0016040.1 mouse_genomes_project 1 56589878 56612222 + Cflar protein_coding processed_transcript MGP_AJ_T0011263.1 MGP_AJ_G0009385.1 mouse_genomes_project 1 191850969 191851258 - Gm23583 misc_RNA misc_RNA MGP_AJ_T0024239.1 MGP_AJ_G0016931.1 mouse_genomes_project 1 190956859 190997105 - MGP_AJ_P0024239 Rcor3 protein_coding protein_coding MGP_AJ_T0024240.1 MGP_AJ_G0016931.1 mouse_genomes_project 1 190957069 190997096 - MGP_AJ_P0024240 Rcor3 protein_coding nonsense_mediated_decay MGP_AJ_T0024241.1 MGP_AJ_G0016931.1 mouse_genomes_project 1 190958882 190974570 - MGP_AJ_P0024241 Rcor3 protein_coding nonsense_mediated_decay MGP_AJ_T0024242.1 MGP_AJ_G0016931.1 mouse_genomes_project 1 190959109 190996963 - MGP_AJ_P0024242 Rcor3 protein_coding protein_coding MGP_AJ_T0024243.1 MGP_AJ_G0016931.1 mouse_genomes_project 1 190959205 190983749 - MGP_AJ_P0024243 Rcor3 protein_coding protein_coding MGP_AJ_T0024244.1 MGP_AJ_G0016931.1 mouse_genomes_project 1 190959686 190996992 - MGP_AJ_P0024244 Rcor3 protein_coding protein_coding MGP_AJ_T0024245.1 MGP_AJ_G0016931.1 mouse_genomes_project 1 190964484 190967149 - Rcor3 protein_coding retained_intron MGP_AJ_T0024246.1 MGP_AJ_G0016931.1 mouse_genomes_project 1 190986918 190990330 - Rcor3 protein_coding retained_intron MGP_AJ_T0024247.1 MGP_AJ_G0016931.1 mouse_genomes_project 1 190987062 190996728 - MGP_AJ_P0024247 Rcor3 protein_coding protein_coding MGP_AJ_T0024248.1 MGP_AJ_G0016931.1 mouse_genomes_project 1 190993270 190997100 - Rcor3 protein_coding retained_intron MGP_AJ_T0024249.1 MGP_AJ_G0016931.1 mouse_genomes_project 1 190995469 190997075 - Rcor3 protein_coding processed_transcript MGP_AJ_T0024250.1 MGP_AJ_G0016931.1 mouse_genomes_project 1 190995760 190997089 - Rcor3 protein_coding processed_transcript MGP_AJ_T0000709.1 MGP_AJ_G0000648.1 mouse_genomes_project 1 159083660 159085734 - TEC TEC MGP_AJ_T0006032.1 MGP_AJ_G0005048.1 mouse_genomes_project 1 183406916 183438965 - 1700112H15Rik lincRNA lincRNA MGP_AJ_T0021417.1 MGP_AJ_G0016318.1 mouse_genomes_project 1 91452899 91519011 + MGP_AJ_P0021417 Sned1 protein_coding protein_coding MGP_AJ_T0021418.1 MGP_AJ_G0016318.1 mouse_genomes_project 1 91452909 91501807 + Sned1 protein_coding retained_intron MGP_AJ_T0021419.1 MGP_AJ_G0016318.1 mouse_genomes_project 1 91491711 91499616 + Sned1 protein_coding processed_transcript MGP_AJ_T0021420.1 MGP_AJ_G0016318.1 mouse_genomes_project 1 91498535 91513726 + MGP_AJ_P0021420 Sned1 protein_coding protein_coding MGP_AJ_T0021421.1 MGP_AJ_G0016318.1 mouse_genomes_project 1 91504142 91514415 + Sned1 protein_coding retained_intron MGP_AJ_T0021422.1 MGP_AJ_G0016318.1 mouse_genomes_project 1 91513633 91514537 + Sned1 protein_coding retained_intron MGP_AJ_T0019781.1 MGP_AJ_G0015998.1 mouse_genomes_project 1 50949307 51059711 - MGP_AJ_P0019781 Pms1 protein_coding protein_coding MGP_AJ_T0019782.1 MGP_AJ_G0015998.1 mouse_genomes_project 1 50957201 51059710 - MGP_AJ_P0019782 Pms1 protein_coding protein_coding MGP_AJ_T0019783.1 MGP_AJ_G0015998.1 mouse_genomes_project 1 51017176 51059660 - Pms1 protein_coding processed_transcript MGP_AJ_T0019784.1 MGP_AJ_G0015998.1 mouse_genomes_project 1 51022028 51059668 - MGP_AJ_P0019784 Pms1 protein_coding protein_coding MGP_AJ_T0019785.1 MGP_AJ_G0015998.1 mouse_genomes_project 1 51040771 51049551 - MGP_AJ_P0019785 Pms1 protein_coding protein_coding MGP_AJ_T0019786.1 MGP_AJ_G0015998.1 mouse_genomes_project 1 51040793 51059708 - MGP_AJ_P0019786 Pms1 protein_coding protein_coding MGP_AJ_T0019787.1 MGP_AJ_G0015998.1 mouse_genomes_project 1 51049095 51059708 - MGP_AJ_P0019787 Pms1 protein_coding protein_coding MGP_AJ_T0019788.1 MGP_AJ_G0015998.1 mouse_genomes_project 1 51057985 51059708 - Pms1 protein_coding retained_intron MGP_AJ_T0009520.1 MGP_AJ_G0007642.1 mouse_genomes_project 1 91564004 91564068 + Mir6902 miRNA miRNA MGP_AJ_T0000394.1 MGP_AJ_G0000338.1 mouse_genomes_project 1 18890178 18892505 - TEC TEC MGP_AJ_T0002981.1 MGP_AJ_G0002795.1 mouse_genomes_project 1 186871192 186873608 - 9330162B11Rik antisense antisense MGP_AJ_T0011859.1 MGP_AJ_G0009954.1 mouse_genomes_project 1 4090222 4090252 + processed_pseudogene processed_pseudogene MGP_AJ_T0002814.1 MGP_AJ_G0002666.1 mouse_genomes_project 1 57432435 57434854 - 1700122D07Rik antisense antisense MGP_AJ_T0021392.1 MGP_AJ_G0016312.1 mouse_genomes_project 1 91170816 91200443 + MGP_AJ_P0021392 Gpr35 protein_coding protein_coding MGP_AJ_T0021393.1 MGP_AJ_G0016312.1 mouse_genomes_project 1 91176115 91200766 + MGP_AJ_P0021393 Gpr35 protein_coding protein_coding MGP_AJ_T0021394.1 MGP_AJ_G0016312.1 mouse_genomes_project 1 91190886 91202801 + MGP_AJ_P0021394 Gpr35 protein_coding protein_coding MGP_AJ_T0021395.1 MGP_AJ_G0016312.1 mouse_genomes_project 1 91190886 91204010 + MGP_AJ_P0021395 Gpr35 protein_coding protein_coding MGP_AJ_T0021396.1 MGP_AJ_G0016312.1 mouse_genomes_project 1 91193111 91203621 + MGP_AJ_P0021396 Gpr35 protein_coding protein_coding MGP_AJ_T0021397.1 MGP_AJ_G0016312.1 mouse_genomes_project 1 91196686 91204148 + MGP_AJ_P0021397 Gpr35 protein_coding protein_coding MGP_AJ_T0023596.1 MGP_AJ_G0016776.1 mouse_genomes_project 1 171472206 171473287 - MGP_AJ_P0023596 Apcs protein_coding protein_coding MGP_AJ_T0011870.1 MGP_AJ_G0009965.1 mouse_genomes_project 1 5015777 5017285 - processed_pseudogene processed_pseudogene MGP_AJ_T0011885.1 MGP_AJ_G0009980.1 mouse_genomes_project 1 8554473 8555082 - processed_pseudogene processed_pseudogene MGP_AJ_T0005886.1 MGP_AJ_G0004935.1 mouse_genomes_project 1 119248278 119249613 + Gm29347 lincRNA lincRNA MGP_AJ_T0011914.1 MGP_AJ_G0010009.1 mouse_genomes_project 1 18823553 18823749 + processed_pseudogene processed_pseudogene MGP_AJ_T0022030.1 MGP_AJ_G0016452.1 mouse_genomes_project 1 130741454 130750185 + MGP_AJ_P0022030 Klhdc8a protein_coding protein_coding MGP_AJ_T0009493.1 MGP_AJ_G0007615.1 mouse_genomes_project 1 60918958 60919063 + Gm44468 miRNA miRNA MGP_AJ_T0023313.1 MGP_AJ_G0016713.1 mouse_genomes_project 1 169242101 169418485 - MGP_AJ_P0023313 Atf6 protein_coding unknown_likely_coding MGP_AJ_T0023314.1 MGP_AJ_G0016713.1 mouse_genomes_project 1 169335439 169337537 - Atf6 protein_coding retained_intron MGP_AJ_T0005730.1 MGP_AJ_G0004812.1 mouse_genomes_project 1 50288478 50351056 + Gm553 lincRNA lincRNA MGP_AJ_T0024127.1 MGP_AJ_G0016907.1 mouse_genomes_project 1 188513700 188561137 - MGP_AJ_P0024127 Cenpf protein_coding protein_coding MGP_AJ_T0024128.1 MGP_AJ_G0016907.1 mouse_genomes_project 1 188515788 188521949 - MGP_AJ_P0024128 Cenpf protein_coding protein_coding MGP_AJ_T0024129.1 MGP_AJ_G0016907.1 mouse_genomes_project 1 188531764 188561137 - MGP_AJ_P0024129 Cenpf protein_coding protein_coding MGP_AJ_T0024130.1 MGP_AJ_G0016907.1 mouse_genomes_project 1 188540803 188544192 - Cenpf protein_coding retained_intron MGP_AJ_T0024131.1 MGP_AJ_G0016907.1 mouse_genomes_project 1 188556875 188561086 - MGP_AJ_P0024131 Cenpf protein_coding nonsense_mediated_decay MGP_AJ_T0024132.1 MGP_AJ_G0016907.1 mouse_genomes_project 1 188560110 188561137 - Cenpf protein_coding retained_intron MGP_AJ_T0098520.1 MGP_AJ_G0036504.1 mouse_genomes_project 1 184986754 184986860 + Gm23821 rRNA rRNA MGP_AJ_T0002899.1 MGP_AJ_G0002728.1 mouse_genomes_project 1 134623339 134626585 - Gm37759 antisense antisense MGP_AJ_T0011863.1 MGP_AJ_G0009958.1 mouse_genomes_project 1 4309505 4309893 - processed_pseudogene processed_pseudogene MGP_AJ_T0000668.1 MGP_AJ_G0000607.1 mouse_genomes_project 1 145475854 145477754 + TEC TEC MGP_AJ_T0011963.1 MGP_AJ_G0010058.1 mouse_genomes_project 1 32218383 32219780 - processed_pseudogene processed_pseudogene MGP_AJ_T0005769.1 MGP_AJ_G0004843.1 mouse_genomes_project 1 67340873 67343902 + Gm28497 lincRNA lincRNA MGP_AJ_T0002806.1 MGP_AJ_G0002660.1 mouse_genomes_project 1 55731960 55739237 - Gm17234 antisense antisense MGP_AJ_T0098814.1 MGP_AJ_G0036798.1 mouse_genomes_project 1 157811926 157812066 + Scarna3a scaRNA scaRNA MGP_AJ_T0021894.1 MGP_AJ_G0016420.1 mouse_genomes_project 1 129104863 129150312 - MGP_AJ_P0021894 Gm29427 protein_coding nonsense_mediated_decay MGP_AJ_T0021525.1 MGP_AJ_G0016343.1 mouse_genomes_project 1 95993358 96002470 - Ppip5k2 protein_coding retained_intron MGP_AJ_T0021526.1 MGP_AJ_G0016343.1 mouse_genomes_project 1 95993358 96057844 - MGP_AJ_P0021526 Ppip5k2 protein_coding protein_coding MGP_AJ_T0021527.1 MGP_AJ_G0016343.1 mouse_genomes_project 1 95993358 96057844 - MGP_AJ_P0021527 Ppip5k2 protein_coding protein_coding MGP_AJ_T0021528.1 MGP_AJ_G0016343.1 mouse_genomes_project 1 95994975 96048959 - MGP_AJ_P0021528 Ppip5k2 protein_coding protein_coding MGP_AJ_T0021529.1 MGP_AJ_G0016343.1 mouse_genomes_project 1 95998754 96003867 - MGP_AJ_P0021529 Ppip5k2 protein_coding protein_coding MGP_AJ_T0021530.1 MGP_AJ_G0016343.1 mouse_genomes_project 1 96006105 96008612 - Ppip5k2 protein_coding retained_intron MGP_AJ_T0021531.1 MGP_AJ_G0016343.1 mouse_genomes_project 1 96029585 96033557 - Ppip5k2 protein_coding retained_intron MGP_AJ_T0019806.1 MGP_AJ_G0016004.1 mouse_genomes_project 1 51484948 51493640 - protein_coding processed_transcript MGP_AJ_T0102204.1 MGP_AJ_G0039947.1 mouse_genomes_project 1 175626946 175627106 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0000700.1 MGP_AJ_G0000639.1 mouse_genomes_project 1 157005244 157007846 + TEC TEC MGP_AJ_T0022670.1 MGP_AJ_G0016583.1 mouse_genomes_project 1 152201879 152213043 + MGP_AJ_P0022670 Rnasel protein_coding protein_coding MGP_AJ_T0022671.1 MGP_AJ_G0016583.1 mouse_genomes_project 1 152204363 152214302 + MGP_AJ_P0022671 Rnasel protein_coding protein_coding MGP_AJ_T0022672.1 MGP_AJ_G0016583.1 mouse_genomes_project 1 152204375 152212983 + MGP_AJ_P0022672 Rnasel protein_coding protein_coding MGP_AJ_T0022673.1 MGP_AJ_G0016583.1 mouse_genomes_project 1 152204391 152212826 + Rnasel protein_coding retained_intron MGP_AJ_T0022674.1 MGP_AJ_G0016583.1 mouse_genomes_project 1 152208351 152212826 + Rnasel protein_coding processed_transcript MGP_AJ_T0099156.1 MGP_AJ_G0037122.1 mouse_genomes_project 1 30127244 30127307 - Gm24732 snRNA snRNA MGP_AJ_T0019867.1 MGP_AJ_G0016016.1 mouse_genomes_project 1 52983618 53041925 - MGP_AJ_P0019867 Rftn2 protein_coding protein_coding MGP_AJ_T0019868.1 MGP_AJ_G0016016.1 mouse_genomes_project 1 52985207 53041925 - MGP_AJ_P0019868 Rftn2 protein_coding nonsense_mediated_decay MGP_AJ_T0019869.1 MGP_AJ_G0016016.1 mouse_genomes_project 1 53016794 53041925 - MGP_AJ_P0019869 Rftn2 protein_coding protein_coding MGP_AJ_T0019870.1 MGP_AJ_G0016016.1 mouse_genomes_project 1 53019088 53021633 - Rftn2 protein_coding processed_transcript MGP_AJ_T0019871.1 MGP_AJ_G0016016.1 mouse_genomes_project 1 53039084 53041925 - Rftn2 protein_coding processed_transcript MGP_AJ_T0009498.1 MGP_AJ_G0007620.1 mouse_genomes_project 1 62292953 62293022 + Gm25748 miRNA miRNA MGP_AJ_T0022252.1 MGP_AJ_G0016503.1 mouse_genomes_project 1 133759123 133780524 - MGP_AJ_P0022252 Rnpep protein_coding protein_coding MGP_AJ_T0022253.1 MGP_AJ_G0016503.1 mouse_genomes_project 1 133759123 133780524 - MGP_AJ_P0022253 Rnpep protein_coding protein_coding MGP_AJ_T0022254.1 MGP_AJ_G0016503.1 mouse_genomes_project 1 133761616 133763827 - Rnpep protein_coding retained_intron MGP_AJ_T0022255.1 MGP_AJ_G0016503.1 mouse_genomes_project 1 133763453 133768082 - Rnpep protein_coding processed_transcript MGP_AJ_T0022256.1 MGP_AJ_G0016503.1 mouse_genomes_project 1 133767993 133771191 - Rnpep protein_coding processed_transcript MGP_AJ_T0022257.1 MGP_AJ_G0016503.1 mouse_genomes_project 1 133767995 133769377 - Rnpep protein_coding retained_intron MGP_AJ_T0022258.1 MGP_AJ_G0016503.1 mouse_genomes_project 1 133772295 133773861 - Rnpep protein_coding retained_intron MGP_AJ_T0022259.1 MGP_AJ_G0016503.1 mouse_genomes_project 1 133773791 133775558 - Rnpep protein_coding retained_intron MGP_AJ_T0022260.1 MGP_AJ_G0016503.1 mouse_genomes_project 1 133774087 133776361 - Rnpep protein_coding retained_intron MGP_AJ_T0002782.1 MGP_AJ_G0002641.1 mouse_genomes_project 1 35576265 35600855 + Gm15457 antisense antisense MGP_AJ_T0000450.1 MGP_AJ_G0000391.1 mouse_genomes_project 1 36429066 36429570 + TEC TEC MGP_AJ_T0012254.1 MGP_AJ_G0010349.1 mouse_genomes_project 1 137468078 137468715 - processed_pseudogene processed_pseudogene MGP_AJ_T0020022.1 MGP_AJ_G0016044.1 mouse_genomes_project 1 56945900 56989603 - MGP_AJ_P0020022 Als2cr11 protein_coding protein_coding MGP_AJ_T0020023.1 MGP_AJ_G0016044.1 mouse_genomes_project 1 56964977 56979267 - Als2cr11 protein_coding processed_transcript MGP_AJ_T0023981.1 MGP_AJ_G0016878.1 mouse_genomes_project 1 181886285 181907572 + MGP_AJ_P0023981 Tlr5 protein_coding protein_coding MGP_AJ_T0023982.1 MGP_AJ_G0016878.1 mouse_genomes_project 1 181886285 181907919 + MGP_AJ_P0023982 Tlr5 protein_coding protein_coding MGP_AJ_T0023983.1 MGP_AJ_G0016878.1 mouse_genomes_project 1 181886319 181901765 + Tlr5 protein_coding processed_transcript MGP_AJ_T0023984.1 MGP_AJ_G0016878.1 mouse_genomes_project 1 181886325 181901529 + Tlr5 protein_coding processed_transcript MGP_AJ_T0023985.1 MGP_AJ_G0016878.1 mouse_genomes_project 1 181904056 181907874 + MGP_AJ_P0023985 Tlr5 protein_coding protein_coding MGP_AJ_T0022549.1 MGP_AJ_G0016560.1 mouse_genomes_project 1 148963553 149395920 - MGP_AJ_P0022549 Hmcn1 protein_coding protein_coding MGP_AJ_T0022550.1 MGP_AJ_G0016560.1 mouse_genomes_project 1 148964556 149395920 - MGP_AJ_P0022550 Hmcn1 protein_coding protein_coding MGP_AJ_T0022551.1 MGP_AJ_G0016560.1 mouse_genomes_project 1 148964713 148984860 - MGP_AJ_P0022551 Hmcn1 protein_coding protein_coding MGP_AJ_T0022552.1 MGP_AJ_G0016560.1 mouse_genomes_project 1 148964740 148966634 - Hmcn1 protein_coding retained_intron MGP_AJ_T0022553.1 MGP_AJ_G0016560.1 mouse_genomes_project 1 148979082 148982263 - Hmcn1 protein_coding processed_transcript MGP_AJ_T0022554.1 MGP_AJ_G0016560.1 mouse_genomes_project 1 149276031 149396304 - Hmcn1 protein_coding retained_intron MGP_AJ_T0011954.1 MGP_AJ_G0010049.1 mouse_genomes_project 1 31075710 31076128 + processed_pseudogene processed_pseudogene MGP_AJ_T0020258.1 MGP_AJ_G0016087.1 mouse_genomes_project 1 62976801 62978871 - MGP_AJ_P0020258 Crygb protein_coding protein_coding MGP_AJ_T0000482.1 MGP_AJ_G0000423.1 mouse_genomes_project 1 57843200 57848615 + TEC TEC MGP_AJ_T0021337.1 MGP_AJ_G0016296.1 mouse_genomes_project 1 90648312 90683241 - MGP_AJ_P0021337 Ndufa10 protein_coding protein_coding MGP_AJ_T0021338.1 MGP_AJ_G0016296.1 mouse_genomes_project 1 90648581 90683138 - MGP_AJ_P0021338 Ndufa10 protein_coding nonsense_mediated_decay MGP_AJ_T0021339.1 MGP_AJ_G0016296.1 mouse_genomes_project 1 90649144 90670098 - Ndufa10 protein_coding retained_intron MGP_AJ_T0021340.1 MGP_AJ_G0016296.1 mouse_genomes_project 1 90661433 90672370 - Ndufa10 protein_coding processed_transcript MGP_AJ_T0021341.1 MGP_AJ_G0016296.1 mouse_genomes_project 1 90671602 90680243 - Ndufa10 protein_coding retained_intron MGP_AJ_T0021342.1 MGP_AJ_G0016296.1 mouse_genomes_project 1 90672483 90680432 - Ndufa10 protein_coding retained_intron MGP_AJ_T0021343.1 MGP_AJ_G0016296.1 mouse_genomes_project 1 90676795 90683128 - MGP_AJ_P0021343 Ndufa10 protein_coding protein_coding MGP_AJ_T0021344.1 MGP_AJ_G0016296.1 mouse_genomes_project 1 90682159 90683148 - Ndufa10 protein_coding retained_intron MGP_AJ_T0102176.1 MGP_AJ_G0039919.1 mouse_genomes_project 1 105379874 105385064 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0023603.1 MGP_AJ_G0016781.1 mouse_genomes_project 1 171784215 171785249 + MGP_AJ_P0023603 Olfr1404 protein_coding protein_coding MGP_AJ_T0022265.1 MGP_AJ_G0016505.1 mouse_genomes_project 1 133823027 133867656 + MGP_AJ_P0022265 Lmod1 protein_coding protein_coding MGP_AJ_T0005796.1 MGP_AJ_G0004860.1 mouse_genomes_project 1 74416587 74429491 + Gm17751 lincRNA lincRNA MGP_AJ_T0005797.1 MGP_AJ_G0004860.1 mouse_genomes_project 1 74416587 74428909 + Gm17751 lincRNA lincRNA MGP_AJ_T0000508.1 MGP_AJ_G0000449.1 mouse_genomes_project 1 66599425 66601798 - TEC TEC MGP_AJ_T0024324.1 MGP_AJ_G0016944.1 mouse_genomes_project 1 193492478 193495180 + Plxna2 protein_coding retained_intron MGP_AJ_T0024325.1 MGP_AJ_G0016944.1 mouse_genomes_project 1 193494137 193691376 + MGP_AJ_P0024325 Plxna2 protein_coding protein_coding MGP_AJ_T0024326.1 MGP_AJ_G0016944.1 mouse_genomes_project 1 193519314 193533514 + Plxna2 protein_coding processed_transcript MGP_AJ_T0024327.1 MGP_AJ_G0016944.1 mouse_genomes_project 1 193639078 193661144 + MGP_AJ_P0024327 Plxna2 protein_coding nonsense_mediated_decay MGP_AJ_T0024328.1 MGP_AJ_G0016944.1 mouse_genomes_project 1 193679221 193688734 + Plxna2 protein_coding retained_intron MGP_AJ_T0000696.1 MGP_AJ_G0000635.1 mouse_genomes_project 1 155832778 155833955 - TEC TEC MGP_AJ_T0099224.1 MGP_AJ_G0037190.1 mouse_genomes_project 1 170071334 170071450 - Gm24871 snRNA snRNA MGP_AJ_T0002757.1 MGP_AJ_G0002622.1 mouse_genomes_project 1 13572816 13587535 + Gm7568 antisense antisense MGP_AJ_T0002758.1 MGP_AJ_G0002622.1 mouse_genomes_project 1 13572816 13578539 + Gm7568 antisense antisense MGP_AJ_T0002759.1 MGP_AJ_G0002622.1 mouse_genomes_project 1 13572853 13578535 + Gm7568 antisense antisense MGP_AJ_T0005899.1 MGP_AJ_G0004944.1 mouse_genomes_project 1 128619290 128630526 - Gm16081 lincRNA lincRNA MGP_AJ_T0021049.1 MGP_AJ_G0016233.1 mouse_genomes_project 1 84689064 84693345 - MGP_AJ_P0021049 Nppc protein_coding protein_coding MGP_AJ_T0011974.1 MGP_AJ_G0010069.1 mouse_genomes_project 1 36152371 36152900 + processed_pseudogene processed_pseudogene MGP_AJ_T0019571.1 MGP_AJ_G0015961.1 mouse_genomes_project 1 40754792 40805419 - MGP_AJ_P0019571 Tgfbrap1 protein_coding protein_coding MGP_AJ_T0019572.1 MGP_AJ_G0015961.1 mouse_genomes_project 1 40754812 40799531 - MGP_AJ_P0019572 Tgfbrap1 protein_coding protein_coding MGP_AJ_T0019573.1 MGP_AJ_G0015961.1 mouse_genomes_project 1 40762300 40768526 - Tgfbrap1 protein_coding retained_intron MGP_AJ_T0019574.1 MGP_AJ_G0015961.1 mouse_genomes_project 1 40767483 40799249 - MGP_AJ_P0019574 Tgfbrap1 protein_coding protein_coding MGP_AJ_T0019575.1 MGP_AJ_G0015961.1 mouse_genomes_project 1 40778297 40805405 - MGP_AJ_P0019575 Tgfbrap1 protein_coding protein_coding MGP_AJ_T0019576.1 MGP_AJ_G0015961.1 mouse_genomes_project 1 40781042 40799265 - Tgfbrap1 protein_coding retained_intron MGP_AJ_T0019577.1 MGP_AJ_G0015961.1 mouse_genomes_project 1 40781283 40805434 - Tgfbrap1 protein_coding retained_intron MGP_AJ_T0019578.1 MGP_AJ_G0015961.1 mouse_genomes_project 1 40782417 40805161 - MGP_AJ_P0019578 Tgfbrap1 protein_coding protein_coding MGP_AJ_T0021279.1 MGP_AJ_G0016285.1 mouse_genomes_project 1 89491226 89514333 + MGP_AJ_P0021279 Scly protein_coding protein_coding MGP_AJ_T0021280.1 MGP_AJ_G0016285.1 mouse_genomes_project 1 89491248 89496416 + Scly protein_coding retained_intron MGP_AJ_T0021281.1 MGP_AJ_G0016285.1 mouse_genomes_project 1 89491256 89502007 + MGP_AJ_P0021281 Scly protein_coding protein_coding MGP_AJ_T0021282.1 MGP_AJ_G0016285.1 mouse_genomes_project 1 89491257 89503115 + MGP_AJ_P0021282 Scly protein_coding nonsense_mediated_decay MGP_AJ_T0021283.1 MGP_AJ_G0016285.1 mouse_genomes_project 1 89491258 89504594 + Scly protein_coding retained_intron MGP_AJ_T0021284.1 MGP_AJ_G0016285.1 mouse_genomes_project 1 89491292 89501973 + MGP_AJ_P0021284 Scly protein_coding protein_coding MGP_AJ_T0021285.1 MGP_AJ_G0016285.1 mouse_genomes_project 1 89491295 89502079 + MGP_AJ_P0021285 Scly protein_coding protein_coding MGP_AJ_T0021286.1 MGP_AJ_G0016285.1 mouse_genomes_project 1 89491315 89498582 + Scly protein_coding processed_transcript MGP_AJ_T0021287.1 MGP_AJ_G0016285.1 mouse_genomes_project 1 89492835 89495774 + MGP_AJ_P0021287 Scly protein_coding protein_coding MGP_AJ_T0021288.1 MGP_AJ_G0016285.1 mouse_genomes_project 1 89495701 89503136 + MGP_AJ_P0021288 Scly protein_coding protein_coding MGP_AJ_T0012067.1 MGP_AJ_G0010162.1 mouse_genomes_project 1 60560394 60561481 - processed_pseudogene processed_pseudogene MGP_AJ_T0000485.1 MGP_AJ_G0000426.1 mouse_genomes_project 1 58698133 58700236 + TEC TEC MGP_AJ_T0100423.1 MGP_AJ_G0038389.1 mouse_genomes_project 1 49718045 49718167 - Gm27607 snoRNA snoRNA MGP_AJ_T0100421.1 MGP_AJ_G0038387.1 mouse_genomes_project 1 41605786 41605911 + Gm26352 snoRNA snoRNA MGP_AJ_T0100474.1 MGP_AJ_G0038440.1 mouse_genomes_project 1 159122367 159122499 + Gm23528 snoRNA snoRNA MGP_AJ_T0011906.1 MGP_AJ_G0010001.1 mouse_genomes_project 1 16461341 16461620 + processed_pseudogene processed_pseudogene MGP_AJ_T0017039.1 MGP_AJ_G0015088.1 mouse_genomes_project 1 136411516 136412660 + Gm4258 processed_transcript retained_intron MGP_AJ_T0017040.1 MGP_AJ_G0015088.1 mouse_genomes_project 1 136411519 136509472 + Gm4258 processed_transcript lincRNA MGP_AJ_T0005977.1 MGP_AJ_G0005007.1 mouse_genomes_project 1 163465548 163467453 + 1700029M03Rik lincRNA lincRNA MGP_AJ_T0005978.1 MGP_AJ_G0005007.1 mouse_genomes_project 1 163465550 163466030 + 1700029M03Rik lincRNA lincRNA MGP_AJ_T0099191.1 MGP_AJ_G0037157.1 mouse_genomes_project 1 106182500 106182607 - Gm24267 snRNA snRNA MGP_AJ_T0099237.1 MGP_AJ_G0037203.1 mouse_genomes_project 1 190671752 190671856 - Gm22446 snRNA snRNA MGP_AJ_T0012172.1 MGP_AJ_G0010267.1 mouse_genomes_project 1 103975143 103975760 + processed_pseudogene processed_pseudogene MGP_AJ_T0000733.1 MGP_AJ_G0000672.1 mouse_genomes_project 1 166863803 166865503 - TEC TEC MGP_AJ_T0020482.1 MGP_AJ_G0016132.1 mouse_genomes_project 1 72346982 72357890 + MGP_AJ_P0020482 Slc11a1 protein_coding protein_coding MGP_AJ_T0020483.1 MGP_AJ_G0016132.1 mouse_genomes_project 1 72346990 72358187 + Slc11a1 protein_coding retained_intron MGP_AJ_T0020484.1 MGP_AJ_G0016132.1 mouse_genomes_project 1 72346990 72358199 + MGP_AJ_P0020484 Slc11a1 protein_coding protein_coding MGP_AJ_T0020485.1 MGP_AJ_G0016132.1 mouse_genomes_project 1 72347012 72358186 + Slc11a1 protein_coding retained_intron MGP_AJ_T0020486.1 MGP_AJ_G0016132.1 mouse_genomes_project 1 72347040 72353491 + Slc11a1 protein_coding processed_transcript MGP_AJ_T0020487.1 MGP_AJ_G0016132.1 mouse_genomes_project 1 72347359 72348678 + Slc11a1 protein_coding processed_transcript MGP_AJ_T0020488.1 MGP_AJ_G0016132.1 mouse_genomes_project 1 72348444 72351584 + Slc11a1 protein_coding processed_transcript MGP_AJ_T0020489.1 MGP_AJ_G0016132.1 mouse_genomes_project 1 72353315 72356308 + Slc11a1 protein_coding retained_intron MGP_AJ_T0020490.1 MGP_AJ_G0016132.1 mouse_genomes_project 1 72355168 72355969 + Slc11a1 protein_coding retained_intron MGP_AJ_T0020491.1 MGP_AJ_G0016132.1 mouse_genomes_project 1 72355475 72356308 + Slc11a1 protein_coding processed_transcript MGP_AJ_T0020492.1 MGP_AJ_G0016132.1 mouse_genomes_project 1 72355734 72357332 + Slc11a1 protein_coding processed_transcript MGP_AJ_T0000355.1 MGP_AJ_G0000299.1 mouse_genomes_project 1 2024488 2025599 - TEC TEC MGP_AJ_T0012199.1 MGP_AJ_G0010294.1 mouse_genomes_project 1 111890632 111891368 - processed_pseudogene processed_pseudogene MGP_AJ_T0012375.1 MGP_AJ_G0010470.1 mouse_genomes_project 1 191672517 191672971 - processed_pseudogene processed_pseudogene MGP_AJ_T0023051.1 MGP_AJ_G0016647.1 mouse_genomes_project 1 161380792 161405306 - MGP_AJ_P0023051 Fmo2 protein_coding protein_coding MGP_AJ_T0023052.1 MGP_AJ_G0016647.1 mouse_genomes_project 1 161380797 161392926 - Fmo2 protein_coding retained_intron MGP_AJ_T0023053.1 MGP_AJ_G0016647.1 mouse_genomes_project 1 161382911 161405259 - MGP_AJ_P0023053 Fmo2 protein_coding protein_coding MGP_AJ_T0023054.1 MGP_AJ_G0016647.1 mouse_genomes_project 1 161384514 161387201 - Fmo2 protein_coding processed_transcript MGP_AJ_T0023055.1 MGP_AJ_G0016647.1 mouse_genomes_project 1 161393978 161405078 - MGP_AJ_P0023055 Fmo2 protein_coding protein_coding MGP_AJ_T0023056.1 MGP_AJ_G0016647.1 mouse_genomes_project 1 161394488 161405320 - Fmo2 protein_coding retained_intron MGP_AJ_T0023057.1 MGP_AJ_G0016647.1 mouse_genomes_project 1 161404274 161405314 - Fmo2 protein_coding retained_intron MGP_AJ_T0020777.1 MGP_AJ_G0016177.1 mouse_genomes_project 1 73476365 73492244 + MGP_AJ_P0020777 Slc4a3 protein_coding protein_coding MGP_AJ_T0020778.1 MGP_AJ_G0016177.1 mouse_genomes_project 1 73476400 73477612 + Slc4a3 protein_coding retained_intron MGP_AJ_T0020779.1 MGP_AJ_G0016177.1 mouse_genomes_project 1 73476566 73478143 + MGP_AJ_P0020779 Slc4a3 protein_coding protein_coding MGP_AJ_T0020780.1 MGP_AJ_G0016177.1 mouse_genomes_project 1 73476600 73488959 + MGP_AJ_P0020780 Slc4a3 protein_coding nonsense_mediated_decay MGP_AJ_T0020781.1 MGP_AJ_G0016177.1 mouse_genomes_project 1 73476631 73477849 + Slc4a3 protein_coding retained_intron MGP_AJ_T0020782.1 MGP_AJ_G0016177.1 mouse_genomes_project 1 73476637 73478116 + MGP_AJ_P0020782 Slc4a3 protein_coding protein_coding MGP_AJ_T0020783.1 MGP_AJ_G0016177.1 mouse_genomes_project 1 73476748 73490951 + Slc4a3 protein_coding retained_intron MGP_AJ_T0020784.1 MGP_AJ_G0016177.1 mouse_genomes_project 1 73476760 73477639 + Slc4a3 protein_coding retained_intron MGP_AJ_T0020785.1 MGP_AJ_G0016177.1 mouse_genomes_project 1 73479703 73481487 + MGP_AJ_P0020785 Slc4a3 protein_coding protein_coding MGP_AJ_T0020786.1 MGP_AJ_G0016177.1 mouse_genomes_project 1 73479872 73481234 + Slc4a3 protein_coding retained_intron MGP_AJ_T0020787.1 MGP_AJ_G0016177.1 mouse_genomes_project 1 73480699 73485243 + MGP_AJ_P0020787 Slc4a3 protein_coding nonsense_mediated_decay MGP_AJ_T0020788.1 MGP_AJ_G0016177.1 mouse_genomes_project 1 73481813 73483837 + MGP_AJ_P0020788 Slc4a3 protein_coding nonsense_mediated_decay MGP_AJ_T0012279.1 MGP_AJ_G0010374.1 mouse_genomes_project 1 148396561 148398626 - processed_pseudogene processed_pseudogene MGP_AJ_T0000447.1 MGP_AJ_G0000388.1 mouse_genomes_project 1 35113399 35116153 - TEC TEC MGP_AJ_T0000606.1 MGP_AJ_G0000547.1 mouse_genomes_project 1 125582107 125583501 + TEC TEC MGP_AJ_T0019958.1 MGP_AJ_G0016034.1 mouse_genomes_project 1 56253981 56268187 - MGP_AJ_P0019958 Ppil3 protein_coding protein_coding MGP_AJ_T0019959.1 MGP_AJ_G0016034.1 mouse_genomes_project 1 56253981 56268182 - MGP_AJ_P0019959 Ppil3 protein_coding protein_coding MGP_AJ_T0019960.1 MGP_AJ_G0016034.1 mouse_genomes_project 1 56253984 56268239 - MGP_AJ_P0019960 Ppil3 protein_coding protein_coding MGP_AJ_T0019961.1 MGP_AJ_G0016034.1 mouse_genomes_project 1 56254007 56255173 - Ppil3 protein_coding processed_transcript MGP_AJ_T0019962.1 MGP_AJ_G0016034.1 mouse_genomes_project 1 56256774 56268122 - MGP_AJ_P0019962 Ppil3 protein_coding protein_coding MGP_AJ_T0019963.1 MGP_AJ_G0016034.1 mouse_genomes_project 1 56257402 56268192 - MGP_AJ_P0019963 Ppil3 protein_coding protein_coding MGP_AJ_T0019964.1 MGP_AJ_G0016034.1 mouse_genomes_project 1 56257406 56268235 - MGP_AJ_P0019964 Ppil3 protein_coding protein_coding MGP_AJ_T0019965.1 MGP_AJ_G0016034.1 mouse_genomes_project 1 56261163 56267929 - Ppil3 protein_coding retained_intron MGP_AJ_T0019966.1 MGP_AJ_G0016034.1 mouse_genomes_project 1 56261817 56263956 - Ppil3 protein_coding retained_intron MGP_AJ_T0023934.1 MGP_AJ_G0016868.1 mouse_genomes_project 1 180812159 180935895 - MGP_AJ_P0023934 Enah protein_coding protein_coding MGP_AJ_T0023935.1 MGP_AJ_G0016868.1 mouse_genomes_project 1 180820154 180936224 - MGP_AJ_P0023935 Enah protein_coding protein_coding MGP_AJ_T0023936.1 MGP_AJ_G0016868.1 mouse_genomes_project 1 180820193 180936214 - MGP_AJ_P0023936 Enah protein_coding protein_coding MGP_AJ_T0023937.1 MGP_AJ_G0016868.1 mouse_genomes_project 1 180820193 180936214 - MGP_AJ_P0023937 Enah protein_coding protein_coding MGP_AJ_T0023938.1 MGP_AJ_G0016868.1 mouse_genomes_project 1 180821072 180824220 - Enah protein_coding retained_intron MGP_AJ_T0023939.1 MGP_AJ_G0016868.1 mouse_genomes_project 1 180821226 180822642 - Enah protein_coding retained_intron MGP_AJ_T0023940.1 MGP_AJ_G0016868.1 mouse_genomes_project 1 180821254 180930654 - MGP_AJ_P0023940 Enah protein_coding protein_coding MGP_AJ_T0023941.1 MGP_AJ_G0016868.1 mouse_genomes_project 1 180821261 180935895 - MGP_AJ_P0023941 Enah protein_coding protein_coding MGP_AJ_T0023942.1 MGP_AJ_G0016868.1 mouse_genomes_project 1 180821261 180935895 - MGP_AJ_P0023942 Enah protein_coding protein_coding MGP_AJ_T0023943.1 MGP_AJ_G0016868.1 mouse_genomes_project 1 180821261 180935895 - MGP_AJ_P0023943 Enah protein_coding protein_coding MGP_AJ_T0023944.1 MGP_AJ_G0016868.1 mouse_genomes_project 1 180821456 180833183 - Enah protein_coding retained_intron MGP_AJ_T0023945.1 MGP_AJ_G0016868.1 mouse_genomes_project 1 180826523 180828413 - Enah protein_coding retained_intron MGP_AJ_T0023946.1 MGP_AJ_G0016868.1 mouse_genomes_project 1 180835263 180839550 - MGP_AJ_P0023946 Enah protein_coding protein_coding MGP_AJ_T0023947.1 MGP_AJ_G0016868.1 mouse_genomes_project 1 180838984 180872586 - Enah protein_coding retained_intron MGP_AJ_T0023948.1 MGP_AJ_G0016868.1 mouse_genomes_project 1 180850316 180856078 - Enah protein_coding retained_intron MGP_AJ_T0023949.1 MGP_AJ_G0016868.1 mouse_genomes_project 1 180872184 180935910 - Enah protein_coding retained_intron MGP_AJ_T0020799.1 MGP_AJ_G0016180.1 mouse_genomes_project 1 76266170 76375996 + MGP_AJ_P0020799 Sgpp2 protein_coding protein_coding MGP_AJ_T0019566.1 MGP_AJ_G0015960.1 mouse_genomes_project 1 40665234 40667518 + Gpr45 protein_coding processed_transcript MGP_AJ_T0019567.1 MGP_AJ_G0015960.1 mouse_genomes_project 1 40665325 40743065 + MGP_AJ_P0019567 Gpr45 protein_coding protein_coding MGP_AJ_T0019568.1 MGP_AJ_G0015960.1 mouse_genomes_project 1 40665501 40738608 + Gpr45 protein_coding processed_transcript MGP_AJ_T0019569.1 MGP_AJ_G0015960.1 mouse_genomes_project 1 40665544 40666241 + Gpr45 protein_coding processed_transcript MGP_AJ_T0019570.1 MGP_AJ_G0015960.1 mouse_genomes_project 1 40739668 40741214 + MGP_AJ_P0019570 Gpr45 protein_coding protein_coding MGP_AJ_T0000748.1 MGP_AJ_G0000687.1 mouse_genomes_project 1 175656503 175657226 + TEC TEC MGP_AJ_T0005896.1 MGP_AJ_G0004942.1 mouse_genomes_project 1 123807177 123809996 + Gm28706 lincRNA lincRNA MGP_AJ_T0023207.1 MGP_AJ_G0016682.1 mouse_genomes_project 1 164659207 164698118 + MGP_AJ_P0023207 Gpa33 protein_coding protein_coding MGP_AJ_T0023208.1 MGP_AJ_G0016682.1 mouse_genomes_project 1 164659309 164689134 + MGP_AJ_P0023208 Gpa33 protein_coding protein_coding MGP_AJ_T0023209.1 MGP_AJ_G0016682.1 mouse_genomes_project 1 164659386 164685741 + Gpa33 protein_coding processed_transcript MGP_AJ_T0023210.1 MGP_AJ_G0016682.1 mouse_genomes_project 1 164659436 164698117 + MGP_AJ_P0023210 Gpa33 protein_coding protein_coding MGP_AJ_T0019219.1 MGP_AJ_G0015892.1 mouse_genomes_project 1 32042798 32052294 + MGP_AJ_P0019219 Imp4 protein_coding protein_coding MGP_AJ_T0019220.1 MGP_AJ_G0015892.1 mouse_genomes_project 1 32042845 32045506 + Imp4 protein_coding retained_intron MGP_AJ_T0019221.1 MGP_AJ_G0015892.1 mouse_genomes_project 1 32042852 32046793 + MGP_AJ_P0019221 Imp4 protein_coding nonsense_mediated_decay MGP_AJ_T0019222.1 MGP_AJ_G0015892.1 mouse_genomes_project 1 32042852 32047324 + MGP_AJ_P0019222 Imp4 protein_coding nonsense_mediated_decay MGP_AJ_T0019223.1 MGP_AJ_G0015892.1 mouse_genomes_project 1 32042884 32046964 + Imp4 protein_coding processed_transcript MGP_AJ_T0019224.1 MGP_AJ_G0015892.1 mouse_genomes_project 1 32042900 32046392 + Imp4 protein_coding processed_transcript MGP_AJ_T0019225.1 MGP_AJ_G0015892.1 mouse_genomes_project 1 32042988 32047451 + MGP_AJ_P0019225 Imp4 protein_coding nonsense_mediated_decay MGP_AJ_T0019226.1 MGP_AJ_G0015892.1 mouse_genomes_project 1 32051184 32051876 + Imp4 protein_coding processed_transcript MGP_AJ_T0012113.1 MGP_AJ_G0010208.1 mouse_genomes_project 1 77903129 77903607 + processed_pseudogene processed_pseudogene MGP_AJ_T0012133.1 MGP_AJ_G0010228.1 mouse_genomes_project 1 85148355 85149018 - processed_pseudogene processed_pseudogene MGP_AJ_T0018708.1 MGP_AJ_G0015790.1 mouse_genomes_project 1 1397444 1516008 - MGP_AJ_P0018708 Rp1 protein_coding protein_coding MGP_AJ_T0018709.1 MGP_AJ_G0015790.1 mouse_genomes_project 1 1450820 1467312 - MGP_AJ_P0018709 Rp1 protein_coding protein_coding MGP_AJ_T0009473.1 MGP_AJ_G0007595.1 mouse_genomes_project 1 20676123 20676194 + Mir30a miRNA miRNA MGP_AJ_T0000523.1 MGP_AJ_G0000464.1 mouse_genomes_project 1 77561541 77563057 - TEC TEC MGP_AJ_T0000710.1 MGP_AJ_G0000649.1 mouse_genomes_project 1 159088501 159091997 - TEC TEC MGP_AJ_T0005916.1 MGP_AJ_G0004961.1 mouse_genomes_project 1 135114164 135116600 - 4933409D19Rik lincRNA lincRNA MGP_AJ_T0012311.1 MGP_AJ_G0010406.1 mouse_genomes_project 1 160817758 160818188 + processed_pseudogene processed_pseudogene MGP_AJ_T0099158.1 MGP_AJ_G0037124.1 mouse_genomes_project 1 30869475 30869575 + Gm25792 snRNA snRNA MGP_AJ_T0018707.1 MGP_AJ_G0015789.1 mouse_genomes_project 1 1093485 1244396 - MGP_AJ_P0018707 unknown_likely_coding unknown_likely_coding MGP_AJ_T0023134.1 MGP_AJ_G0016671.1 mouse_genomes_project 1 163725495 163751158 - MGP_AJ_P0023134 Tiprl protein_coding protein_coding MGP_AJ_T0023135.1 MGP_AJ_G0016671.1 mouse_genomes_project 1 163728791 163729737 - Tiprl protein_coding retained_intron MGP_AJ_T0023136.1 MGP_AJ_G0016671.1 mouse_genomes_project 1 163728935 163751211 - MGP_AJ_P0023136 Tiprl protein_coding nonsense_mediated_decay MGP_AJ_T0023137.1 MGP_AJ_G0016671.1 mouse_genomes_project 1 163735646 163751137 - Tiprl protein_coding processed_transcript MGP_AJ_T0023138.1 MGP_AJ_G0016671.1 mouse_genomes_project 1 163740732 163750728 - MGP_AJ_P0023138 Tiprl protein_coding protein_coding MGP_AJ_T0023139.1 MGP_AJ_G0016671.1 mouse_genomes_project 1 163741591 163751147 - Tiprl protein_coding processed_transcript MGP_AJ_T0099228.1 MGP_AJ_G0037194.1 mouse_genomes_project 1 174580356 174580532 + Gm25560 snRNA snRNA MGP_AJ_T0099195.1 MGP_AJ_G0037161.1 mouse_genomes_project 1 117900838 117900942 + Gm25322 snRNA snRNA MGP_AJ_T0012308.1 MGP_AJ_G0010403.1 mouse_genomes_project 1 159784360 159785557 - processed_pseudogene processed_pseudogene MGP_AJ_T0000618.1 MGP_AJ_G0000559.1 mouse_genomes_project 1 128200705 128202984 + TEC TEC MGP_AJ_T0101673.1 MGP_AJ_G0039639.1 mouse_genomes_project 1 34374798 34375108 - transcribed_processed_pseudogene processed_transcript MGP_AJ_T0101674.1 MGP_AJ_G0039639.1 mouse_genomes_project 1 34374953 34375810 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0012338.1 MGP_AJ_G0010433.1 mouse_genomes_project 1 175119686 175120203 - processed_pseudogene processed_pseudogene MGP_AJ_T0098810.1 MGP_AJ_G0036794.1 mouse_genomes_project 1 85805767 85806039 + Gm25395 scaRNA scaRNA MGP_AJ_T0024194.1 MGP_AJ_G0016920.1 mouse_genomes_project 1 190073542 190086581 - MGP_AJ_P0024194 Atf3 protein_coding protein_coding MGP_AJ_T0024195.1 MGP_AJ_G0016920.1 mouse_genomes_project 1 190073542 190121213 - MGP_AJ_P0024195 Atf3 protein_coding protein_coding MGP_AJ_T0024196.1 MGP_AJ_G0016920.1 mouse_genomes_project 1 190074671 190086349 - Atf3 protein_coding processed_transcript MGP_AJ_T0005914.1 MGP_AJ_G0004959.1 mouse_genomes_project 1 135051932 135065883 + Gm37799 lincRNA lincRNA MGP_AJ_T0000751.1 MGP_AJ_G0000690.1 mouse_genomes_project 1 175814724 175816256 - TEC TEC MGP_AJ_T0021941.1 MGP_AJ_G0016434.1 mouse_genomes_project 1 129625862 129649208 - MGP_AJ_P0021941 Rassf5 protein_coding protein_coding MGP_AJ_T0021942.1 MGP_AJ_G0016434.1 mouse_genomes_project 1 129627977 129694242 - MGP_AJ_P0021942 Rassf5 protein_coding protein_coding MGP_AJ_T0021943.1 MGP_AJ_G0016434.1 mouse_genomes_project 1 129656726 129694370 - Rassf5 protein_coding processed_transcript MGP_AJ_T0101692.1 MGP_AJ_G0039647.1 mouse_genomes_project 1 181470181 181471115 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0101693.1 MGP_AJ_G0039647.1 mouse_genomes_project 1 181470603 181479761 + transcribed_processed_pseudogene processed_transcript MGP_AJ_T0023021.1 MGP_AJ_G0016643.1 mouse_genomes_project 1 161155716 161165400 - 7420461P10Rik protein_coding processed_transcript MGP_AJ_T0023022.1 MGP_AJ_G0016643.1 mouse_genomes_project 1 161155716 161166665 - MGP_AJ_P0023022 7420461P10Rik protein_coding protein_coding MGP_AJ_T0023023.1 MGP_AJ_G0016643.1 mouse_genomes_project 1 161155726 161166778 - MGP_AJ_P0023023 7420461P10Rik protein_coding protein_coding MGP_AJ_T0020876.1 MGP_AJ_G0016200.1 mouse_genomes_project 1 80534489 80597491 + Col4a3 protein_coding retained_intron MGP_AJ_T0020877.1 MGP_AJ_G0016200.1 mouse_genomes_project 1 80534544 80674710 + MGP_AJ_P0020877 Col4a3 protein_coding protein_coding MGP_AJ_T0020878.1 MGP_AJ_G0016200.1 mouse_genomes_project 1 80667961 80671542 + MGP_AJ_P0020878 Col4a3 protein_coding nonsense_mediated_decay MGP_AJ_T0021240.1 MGP_AJ_G0016278.1 mouse_genomes_project 1 89114180 89152087 + MGP_AJ_P0021240 Mlph protein_coding protein_coding MGP_AJ_T0021241.1 MGP_AJ_G0016278.1 mouse_genomes_project 1 89126778 89127532 + MGP_AJ_P0021241 Mlph protein_coding protein_coding MGP_AJ_T0021242.1 MGP_AJ_G0016278.1 mouse_genomes_project 1 89139473 89140545 + Mlph protein_coding retained_intron MGP_AJ_T0020871.1 MGP_AJ_G0016198.1 mouse_genomes_project 1 80271772 80390246 + MGP_AJ_P0020871 Rhbdd1 protein_coding protein_coding MGP_AJ_T0020872.1 MGP_AJ_G0016198.1 mouse_genomes_project 1 80271962 80275051 + Rhbdd1 protein_coding retained_intron MGP_AJ_T0020873.1 MGP_AJ_G0016198.1 mouse_genomes_project 1 80295033 80390246 + MGP_AJ_P0020873 Rhbdd1 protein_coding protein_coding MGP_AJ_T0012269.1 MGP_AJ_G0010364.1 mouse_genomes_project 1 143711864 143712257 - processed_pseudogene processed_pseudogene MGP_AJ_T0019559.1 MGP_AJ_G0015959.1 mouse_genomes_project 1 40564094 40618330 + MGP_AJ_P0019559 Mrps9 protein_coding protein_coding MGP_AJ_T0019560.1 MGP_AJ_G0015959.1 mouse_genomes_project 1 40564096 40612320 + Mrps9 protein_coding processed_transcript MGP_AJ_T0019561.1 MGP_AJ_G0015959.1 mouse_genomes_project 1 40564096 40614654 + Mrps9 protein_coding processed_transcript MGP_AJ_T0019562.1 MGP_AJ_G0015959.1 mouse_genomes_project 1 40564105 40594732 + Mrps9 protein_coding retained_intron MGP_AJ_T0019563.1 MGP_AJ_G0015959.1 mouse_genomes_project 1 40575314 40611769 + Mrps9 protein_coding retained_intron MGP_AJ_T0019564.1 MGP_AJ_G0015959.1 mouse_genomes_project 1 40600377 40618324 + MGP_AJ_P0019564 Mrps9 protein_coding nonsense_mediated_decay MGP_AJ_T0019565.1 MGP_AJ_G0015959.1 mouse_genomes_project 1 40615697 40618324 + Mrps9 protein_coding retained_intron MGP_AJ_T0019032.1 MGP_AJ_G0015849.1 mouse_genomes_project 1 16603985 16643140 + MGP_AJ_P0019032 Tfap2b protein_coding protein_coding MGP_AJ_T0019033.1 MGP_AJ_G0015849.1 mouse_genomes_project 1 16604037 16642647 + MGP_AJ_P0019033 Tfap2b protein_coding protein_coding MGP_AJ_T0019034.1 MGP_AJ_G0015849.1 mouse_genomes_project 1 16607116 16639190 + MGP_AJ_P0019034 Tfap2b protein_coding protein_coding MGP_AJ_T0019035.1 MGP_AJ_G0015849.1 mouse_genomes_project 1 16607365 16609442 + Tfap2b protein_coding retained_intron MGP_AJ_T0019036.1 MGP_AJ_G0015849.1 mouse_genomes_project 1 16608878 16614261 + Tfap2b protein_coding retained_intron MGP_AJ_T0018836.1 MGP_AJ_G0015812.1 mouse_genomes_project 1 7280934 7288689 - MGP_AJ_P0018836 Tcf24 protein_coding protein_coding MGP_AJ_T0018837.1 MGP_AJ_G0015812.1 mouse_genomes_project 1 7280942 7283581 - MGP_AJ_P0018837 Tcf24 protein_coding protein_coding MGP_AJ_T0020750.1 MGP_AJ_G0016173.1 mouse_genomes_project 1 73403395 73411319 - Obsl1 protein_coding retained_intron MGP_AJ_T0020755.1 MGP_AJ_G0016173.1 mouse_genomes_project 1 73409910 73431693 - MGP_AJ_P0020755 Obsl1 protein_coding protein_coding MGP_AJ_T0020756.1 MGP_AJ_G0016173.1 mouse_genomes_project 1 73410936 73411888 - Obsl1 protein_coding retained_intron MGP_AJ_T0020757.1 MGP_AJ_G0016173.1 mouse_genomes_project 1 73411308 73412164 - Obsl1 protein_coding retained_intron MGP_AJ_T0020758.1 MGP_AJ_G0016173.1 mouse_genomes_project 1 73414619 73430973 - MGP_AJ_P0020758 Obsl1 protein_coding protein_coding MGP_AJ_T0020759.1 MGP_AJ_G0016173.1 mouse_genomes_project 1 73414934 73417153 - MGP_AJ_P0020759 Obsl1 protein_coding protein_coding MGP_AJ_T0020760.1 MGP_AJ_G0016173.1 mouse_genomes_project 1 73415054 73415897 - Obsl1 protein_coding retained_intron MGP_AJ_T0020761.1 MGP_AJ_G0016173.1 mouse_genomes_project 1 73415443 73416717 - Obsl1 protein_coding processed_transcript MGP_AJ_T0020762.1 MGP_AJ_G0016173.1 mouse_genomes_project 1 73416480 73417127 - Obsl1 protein_coding retained_intron MGP_AJ_T0020763.1 MGP_AJ_G0016173.1 mouse_genomes_project 1 73420411 73431693 - MGP_AJ_P0020763 Obsl1 protein_coding protein_coding MGP_AJ_T0020764.1 MGP_AJ_G0016173.1 mouse_genomes_project 1 73420412 73429012 - Obsl1 protein_coding retained_intron MGP_AJ_T0020765.1 MGP_AJ_G0016173.1 mouse_genomes_project 1 73427014 73431784 - Obsl1 protein_coding retained_intron MGP_AJ_T0020766.1 MGP_AJ_G0016173.1 mouse_genomes_project 1 73427014 73431693 - Obsl1 protein_coding retained_intron MGP_AJ_T0022148.1 MGP_AJ_G0016477.1 mouse_genomes_project 1 132361014 132365143 - Optc protein_coding retained_intron MGP_AJ_T0022149.1 MGP_AJ_G0016477.1 mouse_genomes_project 1 132361014 132370986 - MGP_AJ_P0022149 Optc protein_coding protein_coding MGP_AJ_T0022150.1 MGP_AJ_G0016477.1 mouse_genomes_project 1 132361015 132371811 - MGP_AJ_P0022150 Optc protein_coding protein_coding MGP_AJ_T0022151.1 MGP_AJ_G0016477.1 mouse_genomes_project 1 132361514 132370940 - MGP_AJ_P0022151 Optc protein_coding protein_coding MGP_AJ_T0022152.1 MGP_AJ_G0016477.1 mouse_genomes_project 1 132364649 132370816 - MGP_AJ_P0022152 Optc protein_coding protein_coding MGP_AJ_T0022675.1 MGP_AJ_G0016584.1 mouse_genomes_project 1 152235278 152266531 - MGP_AJ_P0022675 Rgsl1 protein_coding protein_coding MGP_AJ_T0022676.1 MGP_AJ_G0016584.1 mouse_genomes_project 1 152235280 152302417 - MGP_AJ_P0022676 Rgsl1 protein_coding unknown_likely_coding MGP_AJ_T0022677.1 MGP_AJ_G0016584.1 mouse_genomes_project 1 152235283 152302445 - MGP_AJ_P0022677 Rgsl1 protein_coding protein_coding MGP_AJ_T0022678.1 MGP_AJ_G0016584.1 mouse_genomes_project 1 152235289 152283917 - MGP_AJ_P0022678 Rgsl1 protein_coding nonsense_mediated_decay MGP_AJ_T0022679.1 MGP_AJ_G0016584.1 mouse_genomes_project 1 152237581 152246662 - Rgsl1 protein_coding processed_transcript MGP_AJ_T0022680.1 MGP_AJ_G0016584.1 mouse_genomes_project 1 152241036 152302437 - MGP_AJ_P0022680 Rgsl1 protein_coding nonsense_mediated_decay MGP_AJ_T0022681.1 MGP_AJ_G0016584.1 mouse_genomes_project 1 152248521 152280221 - Rgsl1 protein_coding retained_intron MGP_AJ_T0022682.1 MGP_AJ_G0016584.1 mouse_genomes_project 1 152257804 152272205 - Rgsl1 protein_coding processed_transcript MGP_AJ_T0021574.1 MGP_AJ_G0016351.1 mouse_genomes_project 1 104023315 104046573 + 2310035C23Rik protein_coding processed_transcript MGP_AJ_T0021575.1 MGP_AJ_G0016351.1 mouse_genomes_project 1 104023315 104113749 + MGP_AJ_P0021575 2310035C23Rik protein_coding nonsense_mediated_decay MGP_AJ_T0021576.1 MGP_AJ_G0016351.1 mouse_genomes_project 1 104023337 104113752 + MGP_AJ_P0021576 2310035C23Rik protein_coding protein_coding MGP_AJ_T0021577.1 MGP_AJ_G0016351.1 mouse_genomes_project 1 104023367 104114868 + MGP_AJ_P0021577 2310035C23Rik protein_coding protein_coding MGP_AJ_T0021578.1 MGP_AJ_G0016351.1 mouse_genomes_project 1 104023377 104113388 + MGP_AJ_P0021578 2310035C23Rik protein_coding protein_coding MGP_AJ_T0021579.1 MGP_AJ_G0016351.1 mouse_genomes_project 1 104023391 104024605 + 2310035C23Rik protein_coding processed_transcript MGP_AJ_T0021580.1 MGP_AJ_G0016351.1 mouse_genomes_project 1 104023895 104098192 + 2310035C23Rik protein_coding retained_intron MGP_AJ_T0021581.1 MGP_AJ_G0016351.1 mouse_genomes_project 1 104056163 104114863 + MGP_AJ_P0021581 2310035C23Rik protein_coding nonsense_mediated_decay MGP_AJ_T0021582.1 MGP_AJ_G0016351.1 mouse_genomes_project 1 104063348 104076551 + 2310035C23Rik protein_coding retained_intron MGP_AJ_T0021583.1 MGP_AJ_G0016351.1 mouse_genomes_project 1 104090497 104094252 + 2310035C23Rik protein_coding retained_intron MGP_AJ_T0021584.1 MGP_AJ_G0016351.1 mouse_genomes_project 1 104099902 104113202 + 2310035C23Rik protein_coding retained_intron MGP_AJ_T0021585.1 MGP_AJ_G0016351.1 mouse_genomes_project 1 104100670 104110670 + 2310035C23Rik protein_coding retained_intron MGP_AJ_T0017077.1 MGP_AJ_G0015096.1 mouse_genomes_project 1 164293084 164301432 + Gm16565 processed_transcript sense_overlapping MGP_AJ_T0017078.1 MGP_AJ_G0015096.1 mouse_genomes_project 1 164293208 164294177 + Gm16565 processed_transcript processed_transcript MGP_AJ_T0011992.1 MGP_AJ_G0010087.1 mouse_genomes_project 1 42338957 42339377 + processed_pseudogene processed_pseudogene MGP_AJ_T0021200.1 MGP_AJ_G0016268.1 mouse_genomes_project 1 86692879 86703104 - MGP_AJ_P0021200 Glrp1 protein_coding protein_coding MGP_AJ_T0019634.1 MGP_AJ_G0015973.1 mouse_genomes_project 1 41848810 41850624 + Ercc5 protein_coding retained_intron MGP_AJ_T0019635.1 MGP_AJ_G0015973.1 mouse_genomes_project 1 41848913 41880600 + Ercc5 protein_coding retained_intron MGP_AJ_T0019636.1 MGP_AJ_G0015973.1 mouse_genomes_project 1 41848913 41880600 + MGP_AJ_P0019636 Ercc5 protein_coding protein_coding MGP_AJ_T0019637.1 MGP_AJ_G0015973.1 mouse_genomes_project 1 41848975 41860394 + Ercc5 protein_coding processed_transcript MGP_AJ_T0019638.1 MGP_AJ_G0015973.1 mouse_genomes_project 1 41848998 41856806 + Ercc5 protein_coding processed_transcript MGP_AJ_T0019639.1 MGP_AJ_G0015973.1 mouse_genomes_project 1 41855494 41866236 + Ercc5 protein_coding retained_intron MGP_AJ_T0019640.1 MGP_AJ_G0015973.1 mouse_genomes_project 1 41857380 41866455 + Ercc5 protein_coding retained_intron MGP_AJ_T0000613.1 MGP_AJ_G0000554.1 mouse_genomes_project 1 126491302 126492617 + TEC TEC MGP_AJ_T0009483.1 MGP_AJ_G0007605.1 mouse_genomes_project 1 36850238 36850335 - Mir6349 miRNA miRNA MGP_AJ_T0021558.1 MGP_AJ_G0016347.1 mouse_genomes_project 1 98185390 98897730 + MGP_AJ_P0021558 Cntnap5b protein_coding protein_coding MGP_AJ_T0021559.1 MGP_AJ_G0016347.1 mouse_genomes_project 1 98514547 98898823 + MGP_AJ_P0021559 Cntnap5b protein_coding protein_coding MGP_AJ_T0021560.1 MGP_AJ_G0016347.1 mouse_genomes_project 1 98665040 98783696 + Cntnap5b protein_coding processed_transcript MGP_AJ_T0012000.1 MGP_AJ_G0010095.1 mouse_genomes_project 1 43516296 43519276 - processed_pseudogene processed_pseudogene MGP_AJ_T0000681.1 MGP_AJ_G0000620.1 mouse_genomes_project 1 151715502 151718843 - TEC TEC MGP_AJ_T0002780.1 MGP_AJ_G0002639.1 mouse_genomes_project 1 35240805 35241919 + 4930556I23Rik antisense antisense MGP_AJ_T0021317.1 MGP_AJ_G0016293.1 mouse_genomes_project 1 89732606 89748261 + MGP_AJ_P0021317 Asb1 protein_coding protein_coding MGP_AJ_T0021318.1 MGP_AJ_G0016293.1 mouse_genomes_project 1 89732629 89739120 + Asb1 protein_coding processed_transcript MGP_AJ_T0021319.1 MGP_AJ_G0016293.1 mouse_genomes_project 1 89732776 89751762 + MGP_AJ_P0021319 Asb1 protein_coding protein_coding MGP_AJ_T0021320.1 MGP_AJ_G0016293.1 mouse_genomes_project 1 89732794 89746997 + MGP_AJ_P0021320 Asb1 protein_coding protein_coding MGP_AJ_T0021321.1 MGP_AJ_G0016293.1 mouse_genomes_project 1 89732794 89746997 + MGP_AJ_P0021321 Asb1 protein_coding protein_coding MGP_AJ_T0021322.1 MGP_AJ_G0016293.1 mouse_genomes_project 1 89733142 89744948 + MGP_AJ_P0021322 Asb1 protein_coding protein_coding MGP_AJ_T0021323.1 MGP_AJ_G0016293.1 mouse_genomes_project 1 89733142 89747290 + MGP_AJ_P0021323 Asb1 protein_coding protein_coding MGP_AJ_T0023655.1 MGP_AJ_G0016808.1 mouse_genomes_project 1 173168216 173169146 + MGP_AJ_P0023655 Olfr417 protein_coding protein_coding MGP_AJ_T0022015.1 MGP_AJ_G0016449.1 mouse_genomes_project 1 130554061 130582810 - MGP_AJ_P0022015 Cdk18 protein_coding protein_coding MGP_AJ_T0022016.1 MGP_AJ_G0016449.1 mouse_genomes_project 1 130556410 130558738 - Cdk18 protein_coding retained_intron MGP_AJ_T0022017.1 MGP_AJ_G0016449.1 mouse_genomes_project 1 130556588 130582731 - MGP_AJ_P0022017 Cdk18 protein_coding protein_coding MGP_AJ_T0022018.1 MGP_AJ_G0016449.1 mouse_genomes_project 1 130556655 130558515 - MGP_AJ_P0022018 Cdk18 protein_coding nonsense_mediated_decay MGP_AJ_T0022019.1 MGP_AJ_G0016449.1 mouse_genomes_project 1 130556758 130558080 - Cdk18 protein_coding retained_intron MGP_AJ_T0021243.1 MGP_AJ_G0016279.1 mouse_genomes_project 1 89154121 89155041 + MGP_AJ_P0021243 Prlh protein_coding protein_coding MGP_AJ_T0000729.1 MGP_AJ_G0000668.1 mouse_genomes_project 1 164093238 164094047 + TEC TEC MGP_AJ_T0098501.1 MGP_AJ_G0036485.1 mouse_genomes_project 1 44107824 44107943 + n-R5s211 rRNA rRNA MGP_AJ_T0020582.1 MGP_AJ_G0016151.1 mouse_genomes_project 1 72929171 72935541 - MGP_AJ_P0020582 Ihh protein_coding protein_coding MGP_AJ_T0020583.1 MGP_AJ_G0016151.1 mouse_genomes_project 1 72931584 72935311 - Ihh protein_coding retained_intron MGP_AJ_T0098503.1 MGP_AJ_G0036487.1 mouse_genomes_project 1 75078902 75078996 + Gm25974 rRNA rRNA MGP_AJ_T0012255.1 MGP_AJ_G0010350.1 mouse_genomes_project 1 137475611 137476541 - processed_pseudogene processed_pseudogene MGP_AJ_T0021832.1 MGP_AJ_G0016407.1 mouse_genomes_project 1 126209700 126274314 + MGP_AJ_P0021832 Rab3gap1 protein_coding protein_coding MGP_AJ_T0021833.1 MGP_AJ_G0016407.1 mouse_genomes_project 1 126209729 126233879 + Rab3gap1 protein_coding retained_intron MGP_AJ_T0021834.1 MGP_AJ_G0016407.1 mouse_genomes_project 1 126230769 126235782 + Rab3gap1 protein_coding retained_intron MGP_AJ_T0021835.1 MGP_AJ_G0016407.1 mouse_genomes_project 1 126253706 126256902 + Rab3gap1 protein_coding retained_intron MGP_AJ_T0021836.1 MGP_AJ_G0016407.1 mouse_genomes_project 1 126268661 126273358 + Rab3gap1 protein_coding processed_transcript MGP_AJ_T0012345.1 MGP_AJ_G0010440.1 mouse_genomes_project 1 178424588 178425107 + processed_pseudogene processed_pseudogene MGP_AJ_T0005952.1 MGP_AJ_G0004988.1 mouse_genomes_project 1 153543888 153563411 - Gm9530 lincRNA lincRNA MGP_AJ_T0023044.1 MGP_AJ_G0016646.1 mouse_genomes_project 1 161341854 161372275 - MGP_AJ_P0023044 Fmo1 protein_coding protein_coding MGP_AJ_T0023045.1 MGP_AJ_G0016646.1 mouse_genomes_project 1 161342060 161342767 - Fmo1 protein_coding processed_transcript MGP_AJ_T0023046.1 MGP_AJ_G0016646.1 mouse_genomes_project 1 161342343 161346956 - Fmo1 protein_coding processed_transcript MGP_AJ_T0023047.1 MGP_AJ_G0016646.1 mouse_genomes_project 1 161343851 161346956 - Fmo1 protein_coding retained_intron MGP_AJ_T0023048.1 MGP_AJ_G0016646.1 mouse_genomes_project 1 161346088 161365580 - MGP_AJ_P0023048 Fmo1 protein_coding protein_coding MGP_AJ_T0023049.1 MGP_AJ_G0016646.1 mouse_genomes_project 1 161348553 161365438 - MGP_AJ_P0023049 Fmo1 protein_coding protein_coding MGP_AJ_T0023050.1 MGP_AJ_G0016646.1 mouse_genomes_project 1 161348579 161365332 - MGP_AJ_P0023050 Fmo1 protein_coding protein_coding MGP_AJ_T0000632.1 MGP_AJ_G0000572.1 mouse_genomes_project 1 132291935 132293637 + TEC TEC MGP_AJ_T0000511.1 MGP_AJ_G0000452.1 mouse_genomes_project 1 68194071 68196471 - TEC TEC MGP_AJ_T0002917.1 MGP_AJ_G0002742.1 mouse_genomes_project 1 154316754 154357842 + Gm37571 antisense antisense MGP_AJ_T0005913.1 MGP_AJ_G0004958.1 mouse_genomes_project 1 134760731 134763955 - Gm37552 lincRNA lincRNA MGP_AJ_T0019152.1 MGP_AJ_G0015880.1 mouse_genomes_project 1 28658628 28748306 - MGP_AJ_P0019152 4931428L18Rik protein_coding protein_coding MGP_AJ_T0019153.1 MGP_AJ_G0015880.1 mouse_genomes_project 1 28664563 28748366 - MGP_AJ_P0019153 4931428L18Rik protein_coding protein_coding MGP_AJ_T0019154.1 MGP_AJ_G0015880.1 mouse_genomes_project 1 28665116 28748337 - MGP_AJ_P0019154 4931428L18Rik protein_coding protein_coding MGP_AJ_T0019157.1 MGP_AJ_G0015880.1 mouse_genomes_project 1 28729033 28748393 - MGP_AJ_P0019157 4931428L18Rik protein_coding protein_coding MGP_AJ_T0012005.1 MGP_AJ_G0010100.1 mouse_genomes_project 1 44703591 44703887 - processed_pseudogene processed_pseudogene MGP_AJ_T0099200.1 MGP_AJ_G0037166.1 mouse_genomes_project 1 129031905 129032012 - Gm23623 snRNA snRNA MGP_AJ_T0005832.1 MGP_AJ_G0004890.1 mouse_genomes_project 1 88481077 88484532 + Gm28723 lincRNA lincRNA MGP_AJ_T0012322.1 MGP_AJ_G0010417.1 mouse_genomes_project 1 164576048 164576401 - processed_pseudogene processed_pseudogene MGP_AJ_T0022512.1 MGP_AJ_G0016555.1 mouse_genomes_project 1 148484210 148492398 + MGP_AJ_P0022512 Ptgs2 protein_coding protein_coding MGP_AJ_T0022513.1 MGP_AJ_G0016555.1 mouse_genomes_project 1 148484511 148485507 + MGP_AJ_P0022513 Ptgs2 protein_coding protein_coding MGP_AJ_T0100450.1 MGP_AJ_G0038416.1 mouse_genomes_project 1 101321940 101322074 - Gm22034 snoRNA snoRNA MGP_AJ_T0021195.1 MGP_AJ_G0016266.1 mouse_genomes_project 1 86487214 86579926 + MGP_AJ_P0021195 Trpm8 protein_coding protein_coding MGP_AJ_T0021196.1 MGP_AJ_G0016266.1 mouse_genomes_project 1 86493766 86580368 + MGP_AJ_P0021196 Trpm8 protein_coding protein_coding MGP_AJ_T0021197.1 MGP_AJ_G0016266.1 mouse_genomes_project 1 86510133 86579926 + MGP_AJ_P0021197 Trpm8 protein_coding protein_coding MGP_AJ_T0023443.1 MGP_AJ_G0016739.1 mouse_genomes_project 1 169946405 169964514 + MGP_AJ_P0023443 Nectin4 protein_coding protein_coding MGP_AJ_T0023444.1 MGP_AJ_G0016739.1 mouse_genomes_project 1 169946658 169964825 + MGP_AJ_P0023444 Nectin4 protein_coding protein_coding MGP_AJ_T0023445.1 MGP_AJ_G0016739.1 mouse_genomes_project 1 169946661 169964512 + MGP_AJ_P0023445 Nectin4 protein_coding protein_coding MGP_AJ_T0021769.1 MGP_AJ_G0016395.1 mouse_genomes_project 1 119922993 119937118 - MGP_AJ_P0021769 Ddx18 protein_coding protein_coding MGP_AJ_T0021770.1 MGP_AJ_G0016395.1 mouse_genomes_project 1 119924300 119928339 - Ddx18 protein_coding retained_intron MGP_AJ_T0021771.1 MGP_AJ_G0016395.1 mouse_genomes_project 1 119926528 119929403 - MGP_AJ_P0021771 Ddx18 protein_coding protein_coding MGP_AJ_T0021772.1 MGP_AJ_G0016395.1 mouse_genomes_project 1 119933721 119936851 - Ddx18 protein_coding processed_transcript MGP_AJ_T0005798.1 MGP_AJ_G0004861.1 mouse_genomes_project 1 74806411 74950243 - Gm816 lincRNA lincRNA MGP_AJ_T0000557.1 MGP_AJ_G0000498.1 mouse_genomes_project 1 87672837 87675218 + TEC TEC MGP_AJ_T0021748.1 MGP_AJ_G0016389.1 mouse_genomes_project 1 118722093 118724684 + MGP_AJ_P0021748 C1ql2 protein_coding protein_coding MGP_AJ_T0099189.1 MGP_AJ_G0037155.1 mouse_genomes_project 1 97390773 97390873 + Gm23434 snRNA snRNA MGP_AJ_T0005996.1 MGP_AJ_G0005023.1 mouse_genomes_project 1 174344069 174348180 + Gm36307 lincRNA lincRNA MGP_AJ_T0002969.1 MGP_AJ_G0002784.1 mouse_genomes_project 1 179844165 179850512 - 2210411M09Rik antisense antisense MGP_AJ_T0009478.1 MGP_AJ_G0007600.1 mouse_genomes_project 1 32036108 32036187 - Mir5103 miRNA miRNA MGP_AJ_T0000551.1 MGP_AJ_G0000492.1 mouse_genomes_project 1 84925638 84927160 + TEC TEC MGP_AJ_T0002855.1 MGP_AJ_G0002697.1 mouse_genomes_project 1 91128372 91130759 - 5033417F24Rik antisense antisense MGP_AJ_T0020712.1 MGP_AJ_G0016168.1 mouse_genomes_project 1 73282956 73291196 + MGP_AJ_P0020712 Des protein_coding protein_coding MGP_AJ_T0020713.1 MGP_AJ_G0016168.1 mouse_genomes_project 1 73284144 73285022 + Des protein_coding retained_intron MGP_AJ_T0020714.1 MGP_AJ_G0016168.1 mouse_genomes_project 1 73284648 73286257 + Des protein_coding retained_intron MGP_AJ_T0099206.1 MGP_AJ_G0037172.1 mouse_genomes_project 1 135510924 135510984 - Gm23763 snRNA snRNA MGP_AJ_T0005813.1 MGP_AJ_G0004873.1 mouse_genomes_project 1 81010849 81011806 - Krtap28-10 lincRNA lincRNA MGP_AJ_T0019239.1 MGP_AJ_G0015897.1 mouse_genomes_project 1 32185351 32196625 + MGP_AJ_P0019239 Amer3 protein_coding protein_coding MGP_AJ_T0000502.1 MGP_AJ_G0000443.1 mouse_genomes_project 1 64700022 64702203 + TEC TEC MGP_AJ_T0024193.1 MGP_AJ_G0016919.1 mouse_genomes_project 1 190065831 190068065 - MGP_AJ_P0024193 Fam71a protein_coding protein_coding MGP_AJ_T0021890.1 MGP_AJ_G0016419.1 mouse_genomes_project 1 129068930 129096051 - MGP_AJ_P0021890 C4bp protein_coding protein_coding MGP_AJ_T0021891.1 MGP_AJ_G0016419.1 mouse_genomes_project 1 129070971 129082543 - MGP_AJ_P0021891 C4bp protein_coding protein_coding MGP_AJ_T0021892.1 MGP_AJ_G0016419.1 mouse_genomes_project 1 129077193 129096029 - MGP_AJ_P0021892 C4bp protein_coding protein_coding MGP_AJ_T0021893.1 MGP_AJ_G0016419.1 mouse_genomes_project 1 129092198 129096043 - C4bp protein_coding retained_intron MGP_AJ_T0022612.1 MGP_AJ_G0016571.1 mouse_genomes_project 1 151176350 151183174 + MGP_AJ_P0022612 Apobec4 protein_coding protein_coding MGP_AJ_T0019061.1 MGP_AJ_G0015858.1 mouse_genomes_project 1 18643937 18669461 + MGP_AJ_P0019061 Gsta3 protein_coding protein_coding MGP_AJ_T0019062.1 MGP_AJ_G0015858.1 mouse_genomes_project 1 18643955 18668821 + MGP_AJ_P0019062 Gsta3 protein_coding protein_coding MGP_AJ_T0019063.1 MGP_AJ_G0015858.1 mouse_genomes_project 1 18643977 18668646 + MGP_AJ_P0019063 Gsta3 protein_coding protein_coding MGP_AJ_T0019064.1 MGP_AJ_G0015858.1 mouse_genomes_project 1 18657318 18660110 + Gsta3 protein_coding retained_intron MGP_AJ_T0012344.1 MGP_AJ_G0010439.1 mouse_genomes_project 1 177628329 177628803 + processed_pseudogene processed_pseudogene MGP_AJ_T0000646.1 MGP_AJ_G0000586.1 mouse_genomes_project 1 136437289 136439954 + TEC TEC MGP_AJ_T0022202.1 MGP_AJ_G0016491.1 mouse_genomes_project 1 132915654 132926397 + Klhl12 protein_coding retained_intron MGP_AJ_T0022203.1 MGP_AJ_G0016491.1 mouse_genomes_project 1 132915654 132953578 + MGP_AJ_P0022203 Klhl12 protein_coding protein_coding MGP_AJ_T0022204.1 MGP_AJ_G0016491.1 mouse_genomes_project 1 132915654 132953723 + MGP_AJ_P0022204 Klhl12 protein_coding protein_coding MGP_AJ_T0022205.1 MGP_AJ_G0016491.1 mouse_genomes_project 1 132915678 132953578 + MGP_AJ_P0022205 Klhl12 protein_coding protein_coding MGP_AJ_T0022206.1 MGP_AJ_G0016491.1 mouse_genomes_project 1 132928480 132933738 + Klhl12 protein_coding retained_intron MGP_AJ_T0022207.1 MGP_AJ_G0016491.1 mouse_genomes_project 1 132935153 132947661 + Klhl12 protein_coding retained_intron MGP_AJ_T0020676.1 MGP_AJ_G0016164.1 mouse_genomes_project 1 73159115 73168413 + MGP_AJ_P0020676 Dnajb2 protein_coding protein_coding MGP_AJ_T0020677.1 MGP_AJ_G0016164.1 mouse_genomes_project 1 73159174 73167529 + MGP_AJ_P0020677 Dnajb2 protein_coding protein_coding MGP_AJ_T0020678.1 MGP_AJ_G0016164.1 mouse_genomes_project 1 73159174 73167529 + MGP_AJ_P0020678 Dnajb2 protein_coding protein_coding MGP_AJ_T0020679.1 MGP_AJ_G0016164.1 mouse_genomes_project 1 73159178 73168417 + MGP_AJ_P0020679 Dnajb2 protein_coding protein_coding MGP_AJ_T0020680.1 MGP_AJ_G0016164.1 mouse_genomes_project 1 73159196 73168415 + MGP_AJ_P0020680 Dnajb2 protein_coding protein_coding MGP_AJ_T0020681.1 MGP_AJ_G0016164.1 mouse_genomes_project 1 73159222 73167780 + MGP_AJ_P0020681 Dnajb2 protein_coding nonsense_mediated_decay MGP_AJ_T0020682.1 MGP_AJ_G0016164.1 mouse_genomes_project 1 73159265 73168415 + MGP_AJ_P0020682 Dnajb2 protein_coding protein_coding MGP_AJ_T0020683.1 MGP_AJ_G0016164.1 mouse_genomes_project 1 73159323 73162052 + MGP_AJ_P0020683 Dnajb2 protein_coding protein_coding MGP_AJ_T0020684.1 MGP_AJ_G0016164.1 mouse_genomes_project 1 73159481 73160391 + Dnajb2 protein_coding retained_intron MGP_AJ_T0020685.1 MGP_AJ_G0016164.1 mouse_genomes_project 1 73159784 73160234 + Dnajb2 protein_coding retained_intron MGP_AJ_T0020686.1 MGP_AJ_G0016164.1 mouse_genomes_project 1 73161642 73163640 + Dnajb2 protein_coding retained_intron MGP_AJ_T0020687.1 MGP_AJ_G0016164.1 mouse_genomes_project 1 73164127 73167652 + MGP_AJ_P0020687 Dnajb2 protein_coding nonsense_mediated_decay MGP_AJ_T0020956.1 MGP_AJ_G0016213.1 mouse_genomes_project 1 82861825 82891930 - MGP_AJ_P0020956 Slc16a14 protein_coding protein_coding MGP_AJ_T0020957.1 MGP_AJ_G0016213.1 mouse_genomes_project 1 82886136 82891653 - MGP_AJ_P0020957 Slc16a14 protein_coding protein_coding MGP_AJ_T0005846.1 MGP_AJ_G0004904.1 mouse_genomes_project 1 93031138 93036508 + 4930440C22Rik lincRNA lincRNA MGP_AJ_T0005847.1 MGP_AJ_G0004904.1 mouse_genomes_project 1 93031497 93036528 + 4930440C22Rik lincRNA lincRNA MGP_AJ_T0000719.1 MGP_AJ_G0000658.1 mouse_genomes_project 1 160217340 160218462 + TEC TEC MGP_AJ_T0020837.1 MGP_AJ_G0016190.1 mouse_genomes_project 1 77723995 77729426 + MGP_AJ_P0020837 Mrpl44 protein_coding protein_coding MGP_AJ_T0020838.1 MGP_AJ_G0016190.1 mouse_genomes_project 1 77724093 77726529 + Mrpl44 protein_coding retained_intron MGP_AJ_T0099227.1 MGP_AJ_G0037193.1 mouse_genomes_project 1 171420945 171421050 - Gm24817 snRNA snRNA MGP_AJ_T0018737.1 MGP_AJ_G0015796.1 mouse_genomes_project 1 2028310 2139948 - MGP_AJ_P0018737 Rgs20 protein_coding protein_coding MGP_AJ_T0018738.1 MGP_AJ_G0015796.1 mouse_genomes_project 1 2028313 2204578 - MGP_AJ_P0018738 Rgs20 protein_coding protein_coding MGP_AJ_T0018739.1 MGP_AJ_G0015796.1 mouse_genomes_project 1 2029223 2139948 - MGP_AJ_P0018739 Rgs20 protein_coding nonsense_mediated_decay MGP_AJ_T0018740.1 MGP_AJ_G0015796.1 mouse_genomes_project 1 2031091 2204575 - MGP_AJ_P0018740 Rgs20 protein_coding protein_coding MGP_AJ_T0018741.1 MGP_AJ_G0015796.1 mouse_genomes_project 1 2041522 2139948 - Rgs20 protein_coding retained_intron MGP_AJ_T0018742.1 MGP_AJ_G0015796.1 mouse_genomes_project 1 2196320 2204566 - Rgs20 protein_coding processed_transcript MGP_AJ_T0102201.1 MGP_AJ_G0039944.1 mouse_genomes_project 1 172887937 172888828 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0005749.1 MGP_AJ_G0004827.1 mouse_genomes_project 1 59289796 59310044 + 9530026F06Rik lincRNA lincRNA MGP_AJ_T0000774.1 MGP_AJ_G0000711.1 mouse_genomes_project 1 181417435 181421607 + TEC TEC MGP_AJ_T0019649.1 MGP_AJ_G0015976.1 mouse_genomes_project 1 42989211 43003107 + Col3a1 protein_coding retained_intron MGP_AJ_T0019650.1 MGP_AJ_G0015976.1 mouse_genomes_project 1 42989211 43028390 + MGP_AJ_P0019650 Col3a1 protein_coding protein_coding MGP_AJ_T0019651.1 MGP_AJ_G0015976.1 mouse_genomes_project 1 42989320 42995092 + Col3a1 protein_coding processed_transcript MGP_AJ_T0019652.1 MGP_AJ_G0015976.1 mouse_genomes_project 1 43005677 43006983 + Col3a1 protein_coding retained_intron MGP_AJ_T0019653.1 MGP_AJ_G0015976.1 mouse_genomes_project 1 43012208 43015306 + Col3a1 protein_coding retained_intron MGP_AJ_T0019654.1 MGP_AJ_G0015976.1 mouse_genomes_project 1 43013774 43019097 + MGP_AJ_P0019654 Col3a1 protein_coding protein_coding MGP_AJ_T0019655.1 MGP_AJ_G0015976.1 mouse_genomes_project 1 43018379 43026451 + MGP_AJ_P0019655 Col3a1 protein_coding protein_coding MGP_AJ_T0012283.1 MGP_AJ_G0010378.1 mouse_genomes_project 1 149543958 149545036 + processed_pseudogene processed_pseudogene MGP_AJ_T0011928.1 MGP_AJ_G0010023.1 mouse_genomes_project 1 23402563 23403119 - processed_pseudogene processed_pseudogene MGP_AJ_T0019424.1 MGP_AJ_G0015928.1 mouse_genomes_project 1 35532276 35540336 + MGP_AJ_P0019424 Mrpl30 protein_coding protein_coding MGP_AJ_T0019425.1 MGP_AJ_G0015928.1 mouse_genomes_project 1 35532331 35540165 + MGP_AJ_P0019425 Mrpl30 protein_coding protein_coding MGP_AJ_T0019426.1 MGP_AJ_G0015928.1 mouse_genomes_project 1 35532332 35535047 + Mrpl30 protein_coding retained_intron MGP_AJ_T0019427.1 MGP_AJ_G0015928.1 mouse_genomes_project 1 35532342 35535785 + MGP_AJ_P0019427 Mrpl30 protein_coding protein_coding MGP_AJ_T0019428.1 MGP_AJ_G0015928.1 mouse_genomes_project 1 35534733 35539966 + MGP_AJ_P0019428 Mrpl30 protein_coding protein_coding MGP_AJ_T0019429.1 MGP_AJ_G0015928.1 mouse_genomes_project 1 35535735 35540139 + MGP_AJ_P0019429 Mrpl30 protein_coding protein_coding MGP_AJ_T0019430.1 MGP_AJ_G0015928.1 mouse_genomes_project 1 35539056 35539926 + Mrpl30 protein_coding retained_intron MGP_AJ_T0012259.1 MGP_AJ_G0010354.1 mouse_genomes_project 1 139743466 139744028 - processed_pseudogene processed_pseudogene MGP_AJ_T0002772.1 MGP_AJ_G0002633.1 mouse_genomes_project 1 32184897 32185406 - 1700101I19Rik antisense antisense MGP_AJ_T0002773.1 MGP_AJ_G0002633.1 mouse_genomes_project 1 32184919 32185308 - 1700101I19Rik antisense antisense MGP_AJ_T0023267.1 MGP_AJ_G0016699.1 mouse_genomes_project 1 167980425 168013512 - MGP_AJ_P0023267 Nuf2 protein_coding protein_coding MGP_AJ_T0023268.1 MGP_AJ_G0016699.1 mouse_genomes_project 1 167980804 168013476 - MGP_AJ_P0023268 Nuf2 protein_coding protein_coding MGP_AJ_T0023269.1 MGP_AJ_G0016699.1 mouse_genomes_project 1 167988703 168004425 - MGP_AJ_P0023269 Nuf2 protein_coding protein_coding MGP_AJ_T0023270.1 MGP_AJ_G0016699.1 mouse_genomes_project 1 167992519 168013459 - MGP_AJ_P0023270 Nuf2 protein_coding protein_coding MGP_AJ_T0023271.1 MGP_AJ_G0016699.1 mouse_genomes_project 1 168007064 168013466 - Nuf2 protein_coding retained_intron MGP_AJ_T0018734.1 MGP_AJ_G0015795.1 mouse_genomes_project 1 1974810 2016493 + MGP_AJ_P0018734 Tcea1 protein_coding protein_coding MGP_AJ_T0018735.1 MGP_AJ_G0015795.1 mouse_genomes_project 1 1975144 2016497 + MGP_AJ_P0018735 Tcea1 protein_coding protein_coding MGP_AJ_T0018736.1 MGP_AJ_G0015795.1 mouse_genomes_project 1 2010377 2014792 + MGP_AJ_P0018736 Tcea1 protein_coding unknown_likely_coding MGP_AJ_T0022990.1 MGP_AJ_G0016638.1 mouse_genomes_project 1 160468577 160472828 + MGP_AJ_P0022990 Pigc protein_coding protein_coding MGP_AJ_T0022991.1 MGP_AJ_G0016638.1 mouse_genomes_project 1 160468579 160471723 + MGP_AJ_P0022991 Pigc protein_coding protein_coding MGP_AJ_T0022992.1 MGP_AJ_G0016638.1 mouse_genomes_project 1 160468619 160472827 + MGP_AJ_P0022992 Pigc protein_coding protein_coding MGP_AJ_T0022993.1 MGP_AJ_G0016638.1 mouse_genomes_project 1 160468690 160470264 + MGP_AJ_P0022993 Pigc protein_coding protein_coding MGP_AJ_T0022994.1 MGP_AJ_G0016638.1 mouse_genomes_project 1 160468693 160469923 + MGP_AJ_P0022994 Pigc protein_coding protein_coding MGP_AJ_T0011861.1 MGP_AJ_G0009956.1 mouse_genomes_project 1 4175698 4175857 + processed_pseudogene processed_pseudogene MGP_AJ_T0020570.1 MGP_AJ_G0016145.1 mouse_genomes_project 1 72757370 72770761 + MGP_AJ_P0020570 Wnt6 protein_coding protein_coding MGP_AJ_T0020571.1 MGP_AJ_G0016145.1 mouse_genomes_project 1 72767877 72770041 + Wnt6 protein_coding retained_intron MGP_AJ_T0012105.1 MGP_AJ_G0010200.1 mouse_genomes_project 1 73561095 73562676 + processed_pseudogene processed_pseudogene MGP_AJ_T0000656.1 MGP_AJ_G0000595.1 mouse_genomes_project 1 137446200 137448579 - TEC TEC MGP_AJ_T0000546.1 MGP_AJ_G0000487.1 mouse_genomes_project 1 84659786 84662599 + TEC TEC MGP_AJ_T0011248.1 MGP_AJ_G0009370.1 mouse_genomes_project 1 67811761 67812036 - Gm22665 misc_RNA misc_RNA MGP_AJ_T0012355.1 MGP_AJ_G0010450.1 mouse_genomes_project 1 182165527 182181585 - processed_pseudogene processed_pseudogene MGP_AJ_T0011261.1 MGP_AJ_G0009383.1 mouse_genomes_project 1 189377739 189378052 - Gm23153 misc_RNA misc_RNA MGP_AJ_T0009562.1 MGP_AJ_G0007684.1 mouse_genomes_project 1 184116994 184117063 + Mir664 miRNA miRNA MGP_AJ_T0012157.1 MGP_AJ_G0010252.1 mouse_genomes_project 1 98700323 98700830 + processed_pseudogene processed_pseudogene MGP_AJ_T0023656.1 MGP_AJ_G0016809.1 mouse_genomes_project 1 173183051 173184061 + MGP_AJ_P0023656 Olfr248 protein_coding protein_coding MGP_AJ_T0012032.1 MGP_AJ_G0010127.1 mouse_genomes_project 1 52366880 52367459 + processed_pseudogene processed_pseudogene MGP_AJ_T0023991.1 MGP_AJ_G0016880.1 mouse_genomes_project 1 182163802 182184122 - MGP_AJ_P0023991 Brox protein_coding protein_coding MGP_AJ_T0023992.1 MGP_AJ_G0016880.1 mouse_genomes_project 1 182163804 182184386 - MGP_AJ_P0023992 Brox protein_coding protein_coding MGP_AJ_T0023993.1 MGP_AJ_G0016880.1 mouse_genomes_project 1 182170919 182173333 - Brox protein_coding retained_intron MGP_AJ_T0023994.1 MGP_AJ_G0016880.1 mouse_genomes_project 1 182173276 182179856 - Brox protein_coding retained_intron MGP_AJ_T0023995.1 MGP_AJ_G0016880.1 mouse_genomes_project 1 182173331 182184358 - MGP_AJ_P0023995 Brox protein_coding nonsense_mediated_decay MGP_AJ_T0023996.1 MGP_AJ_G0016880.1 mouse_genomes_project 1 182174891 182179423 - Brox protein_coding retained_intron MGP_AJ_T0023997.1 MGP_AJ_G0016880.1 mouse_genomes_project 1 182177993 182184386 - Brox protein_coding processed_transcript MGP_AJ_T0023998.1 MGP_AJ_G0016880.1 mouse_genomes_project 1 182179087 182183003 - MGP_AJ_P0023998 Brox protein_coding protein_coding MGP_AJ_T0020614.1 MGP_AJ_G0016157.1 mouse_genomes_project 1 73093502 73102177 - MGP_AJ_P0020614 Abcb6 protein_coding protein_coding MGP_AJ_T0020615.1 MGP_AJ_G0016157.1 mouse_genomes_project 1 73093504 73102071 - Abcb6 protein_coding retained_intron MGP_AJ_T0020616.1 MGP_AJ_G0016157.1 mouse_genomes_project 1 73093543 73094655 - MGP_AJ_P0020616 Abcb6 protein_coding protein_coding MGP_AJ_T0020617.1 MGP_AJ_G0016157.1 mouse_genomes_project 1 73094505 73102071 - Abcb6 protein_coding retained_intron MGP_AJ_T0020618.1 MGP_AJ_G0016157.1 mouse_genomes_project 1 73097337 73100734 - Abcb6 protein_coding retained_intron MGP_AJ_T0020619.1 MGP_AJ_G0016157.1 mouse_genomes_project 1 73099694 73102161 - Abcb6 protein_coding retained_intron MGP_AJ_T0005993.1 MGP_AJ_G0005020.1 mouse_genomes_project 1 169523599 169528094 + Gm10522 lincRNA lincRNA MGP_AJ_T0011971.1 MGP_AJ_G0010066.1 mouse_genomes_project 1 33546691 33547595 + processed_pseudogene processed_pseudogene MGP_AJ_T0005645.1 MGP_AJ_G0004752.1 mouse_genomes_project 1 6946468 6947796 - Gm29520 lincRNA lincRNA MGP_AJ_T0000393.1 MGP_AJ_G0000337.1 mouse_genomes_project 1 18638083 18640170 + TEC TEC MGP_AJ_T0022779.1 MGP_AJ_G0016603.1 mouse_genomes_project 1 154776076 154793132 + MGP_AJ_P0022779 Nphs2 protein_coding protein_coding MGP_AJ_T0022780.1 MGP_AJ_G0016603.1 mouse_genomes_project 1 154776392 154791528 + MGP_AJ_P0022780 Nphs2 protein_coding protein_coding MGP_AJ_T0023337.1 MGP_AJ_G0016719.1 mouse_genomes_project 1 169560699 169571617 + MGP_AJ_P0023337 Fcgr4 protein_coding protein_coding MGP_AJ_T0021818.1 MGP_AJ_G0016404.1 mouse_genomes_project 1 126067233 126106097 + MGP_AJ_P0021818 Acmsd protein_coding protein_coding MGP_AJ_T0021819.1 MGP_AJ_G0016404.1 mouse_genomes_project 1 126094868 126106097 + Acmsd protein_coding processed_transcript MGP_AJ_T0012304.1 MGP_AJ_G0010399.1 mouse_genomes_project 1 157631670 157632153 - processed_pseudogene processed_pseudogene MGP_AJ_T0022436.1 MGP_AJ_G0016538.1 mouse_genomes_project 1 138028683 138041763 - MGP_AJ_P0022436 protein_coding protein_coding MGP_AJ_T0022437.1 MGP_AJ_G0016538.1 mouse_genomes_project 1 138032274 138035161 - MGP_AJ_P0022437 protein_coding protein_coding MGP_AJ_T0009523.1 MGP_AJ_G0007645.1 mouse_genomes_project 1 96825156 96825266 + Gm26134 miRNA miRNA MGP_AJ_T0020573.1 MGP_AJ_G0016147.1 mouse_genomes_project 1 72840535 72843334 + MGP_AJ_P0020573 Cdk5r2 protein_coding protein_coding MGP_AJ_T0099145.1 MGP_AJ_G0037111.1 mouse_genomes_project 1 6766311 6766414 + Gm24765 snRNA snRNA MGP_AJ_T0000693.1 MGP_AJ_G0000632.1 mouse_genomes_project 1 155328505 155331147 - TEC TEC MGP_AJ_T0006021.1 MGP_AJ_G0005042.1 mouse_genomes_project 1 182305376 182305759 + Gm37986 lincRNA lincRNA MGP_AJ_T0000587.1 MGP_AJ_G0000528.1 mouse_genomes_project 1 118164464 118172627 - TEC TEC MGP_AJ_T0005768.1 MGP_AJ_G0004842.1 mouse_genomes_project 1 65940663 65942184 + Gm15671 lincRNA lincRNA MGP_AJ_T0012332.1 MGP_AJ_G0010427.1 mouse_genomes_project 1 169485457 169485752 + processed_pseudogene processed_pseudogene MGP_AJ_T0006008.1 MGP_AJ_G0005034.1 mouse_genomes_project 1 180138294 180140809 + A430110L20Rik lincRNA lincRNA MGP_AJ_T0006009.1 MGP_AJ_G0005034.1 mouse_genomes_project 1 180138384 180140801 + A430110L20Rik lincRNA lincRNA MGP_AJ_T0000444.1 MGP_AJ_G0000385.1 mouse_genomes_project 1 34533052 34536714 - TEC TEC MGP_AJ_T0020047.1 MGP_AJ_G0016048.1 mouse_genomes_project 1 57154003 57247576 + MGP_AJ_P0020047 Cdk15 protein_coding protein_coding MGP_AJ_T0020048.1 MGP_AJ_G0016048.1 mouse_genomes_project 1 57154004 57246346 + MGP_AJ_P0020048 Cdk15 protein_coding protein_coding MGP_AJ_T0020049.1 MGP_AJ_G0016048.1 mouse_genomes_project 1 57154225 57154976 + Cdk15 protein_coding processed_transcript MGP_AJ_T0020050.1 MGP_AJ_G0016048.1 mouse_genomes_project 1 57195369 57246425 + Cdk15 protein_coding processed_transcript MGP_AJ_T0012326.1 MGP_AJ_G0010421.1 mouse_genomes_project 1 165694448 165694857 - processed_pseudogene processed_pseudogene MGP_AJ_T0011882.1 MGP_AJ_G0009977.1 mouse_genomes_project 1 7889519 7890987 - processed_pseudogene processed_pseudogene MGP_AJ_T0018725.1 MGP_AJ_G0015793.1 mouse_genomes_project 1 1921696 1965294 + MGP_AJ_P0018725 Lypla1 protein_coding nonsense_mediated_decay MGP_AJ_T0018726.1 MGP_AJ_G0015793.1 mouse_genomes_project 1 1921731 1963010 + MGP_AJ_P0018726 Lypla1 protein_coding protein_coding MGP_AJ_T0018727.1 MGP_AJ_G0015793.1 mouse_genomes_project 1 1921738 1957557 + MGP_AJ_P0018727 Lypla1 protein_coding protein_coding MGP_AJ_T0018729.1 MGP_AJ_G0015793.1 mouse_genomes_project 1 1921804 1961445 + MGP_AJ_P0018729 Lypla1 protein_coding protein_coding MGP_AJ_T0018730.1 MGP_AJ_G0015793.1 mouse_genomes_project 1 1921806 1957240 + MGP_AJ_P0018730 Lypla1 protein_coding protein_coding MGP_AJ_T0018731.1 MGP_AJ_G0015793.1 mouse_genomes_project 1 1921819 1961623 + MGP_AJ_P0018731 Lypla1 protein_coding protein_coding MGP_AJ_T0018732.1 MGP_AJ_G0015793.1 mouse_genomes_project 1 1921849 1963011 + MGP_AJ_P0018732 Lypla1 protein_coding protein_coding MGP_AJ_T0018733.1 MGP_AJ_G0015793.1 mouse_genomes_project 1 1953071 1959098 + Lypla1 protein_coding retained_intron MGP_AJ_T0011873.1 MGP_AJ_G0009968.1 mouse_genomes_project 1 6551215 6551733 - processed_pseudogene processed_pseudogene MGP_AJ_T0101675.1 MGP_AJ_G0039640.1 mouse_genomes_project 1 43700556 43710285 - transcribed_processed_pseudogene processed_transcript MGP_AJ_T0101676.1 MGP_AJ_G0039640.1 mouse_genomes_project 1 43700899 43710253 - transcribed_processed_pseudogene processed_transcript MGP_AJ_T0101677.1 MGP_AJ_G0039640.1 mouse_genomes_project 1 43709446 43710062 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0102203.1 MGP_AJ_G0039946.1 mouse_genomes_project 1 173173873 173174982 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0023872.1 MGP_AJ_G0016853.1 mouse_genomes_project 1 179683854 179701833 - MGP_AJ_P0023872 H3f3a protein_coding protein_coding MGP_AJ_T0023873.1 MGP_AJ_G0016853.1 mouse_genomes_project 1 179687767 179701735 - MGP_AJ_P0023873 H3f3a protein_coding protein_coding MGP_AJ_T0023874.1 MGP_AJ_G0016853.1 mouse_genomes_project 1 179687767 179702144 - MGP_AJ_P0023874 H3f3a protein_coding protein_coding MGP_AJ_T0023875.1 MGP_AJ_G0016853.1 mouse_genomes_project 1 179694428 179701804 - H3f3a protein_coding retained_intron MGP_AJ_T0023876.1 MGP_AJ_G0016853.1 mouse_genomes_project 1 179694877 179701804 - MGP_AJ_P0023876 H3f3a protein_coding protein_coding MGP_AJ_T0023877.1 MGP_AJ_G0016853.1 mouse_genomes_project 1 179694885 179701804 - MGP_AJ_P0023877 H3f3a protein_coding protein_coding MGP_AJ_T0012300.1 MGP_AJ_G0010395.1 mouse_genomes_project 1 156078004 156078526 + processed_pseudogene processed_pseudogene MGP_AJ_T0000479.1 MGP_AJ_G0000420.1 mouse_genomes_project 1 57550395 57552267 - TEC TEC MGP_AJ_T0022956.1 MGP_AJ_G0016630.1 mouse_genomes_project 1 159574029 159617772 - Klhl20 protein_coding retained_intron MGP_AJ_T0022957.1 MGP_AJ_G0016630.1 mouse_genomes_project 1 159574029 159617772 - MGP_AJ_P0022957 Klhl20 protein_coding protein_coding MGP_AJ_T0022958.1 MGP_AJ_G0016630.1 mouse_genomes_project 1 159574034 159617689 - MGP_AJ_P0022958 Klhl20 protein_coding nonsense_mediated_decay MGP_AJ_T0022959.1 MGP_AJ_G0016630.1 mouse_genomes_project 1 159574052 159581289 - MGP_AJ_P0022959 Klhl20 protein_coding nonsense_mediated_decay MGP_AJ_T0022960.1 MGP_AJ_G0016630.1 mouse_genomes_project 1 159582108 159617772 - Klhl20 protein_coding retained_intron MGP_AJ_T0022961.1 MGP_AJ_G0016630.1 mouse_genomes_project 1 159585589 159589820 - Klhl20 protein_coding retained_intron MGP_AJ_T0022962.1 MGP_AJ_G0016630.1 mouse_genomes_project 1 159592393 159617703 - Klhl20 protein_coding retained_intron MGP_AJ_T0100405.1 MGP_AJ_G0038371.1 mouse_genomes_project 1 13097088 13097220 + Gm25168 snoRNA snoRNA MGP_AJ_T0023147.1 MGP_AJ_G0016674.1 mouse_genomes_project 1 163970619 163974634 + Mpc2 protein_coding retained_intron MGP_AJ_T0023148.1 MGP_AJ_G0016674.1 mouse_genomes_project 1 163971019 163991647 + MGP_AJ_P0023148 Mpc2 protein_coding protein_coding MGP_AJ_T0023149.1 MGP_AJ_G0016674.1 mouse_genomes_project 1 163971206 163988127 + Mpc2 protein_coding retained_intron MGP_AJ_T0023150.1 MGP_AJ_G0016674.1 mouse_genomes_project 1 163971347 163991541 + MGP_AJ_P0023150 Mpc2 protein_coding nonsense_mediated_decay MGP_AJ_T0023151.1 MGP_AJ_G0016674.1 mouse_genomes_project 1 163988574 163991552 + Mpc2 protein_coding processed_transcript MGP_AJ_T0021690.1 MGP_AJ_G0016376.1 mouse_genomes_project 1 117203110 117424081 - MGP_AJ_P0021690 Gli2 protein_coding protein_coding MGP_AJ_T0021691.1 MGP_AJ_G0016376.1 mouse_genomes_project 1 117217474 117423801 - MGP_AJ_P0021691 Gli2 protein_coding nonsense_mediated_decay MGP_AJ_T0021692.1 MGP_AJ_G0016376.1 mouse_genomes_project 1 117217474 117423801 - MGP_AJ_P0021692 Gli2 protein_coding nonsense_mediated_decay MGP_AJ_T0021693.1 MGP_AJ_G0016376.1 mouse_genomes_project 1 117217474 117423801 - MGP_AJ_P0021693 Gli2 protein_coding nonsense_mediated_decay MGP_AJ_T0021694.1 MGP_AJ_G0016376.1 mouse_genomes_project 1 117217474 117423801 - MGP_AJ_P0021694 Gli2 protein_coding protein_coding MGP_AJ_T0021695.1 MGP_AJ_G0016376.1 mouse_genomes_project 1 117217474 117423801 - MGP_AJ_P0021695 Gli2 protein_coding nonsense_mediated_decay MGP_AJ_T0021696.1 MGP_AJ_G0016376.1 mouse_genomes_project 1 117217476 117423801 - MGP_AJ_P0021696 Gli2 protein_coding protein_coding MGP_AJ_T0021697.1 MGP_AJ_G0016376.1 mouse_genomes_project 1 117217476 117423801 - MGP_AJ_P0021697 Gli2 protein_coding protein_coding MGP_AJ_T0021698.1 MGP_AJ_G0016376.1 mouse_genomes_project 1 117237801 117352729 - Gli2 protein_coding processed_transcript MGP_AJ_T0023880.1 MGP_AJ_G0016855.1 mouse_genomes_project 1 179782564 179788809 + MGP_AJ_P0023880 Lefty2 protein_coding protein_coding MGP_AJ_T0023881.1 MGP_AJ_G0016855.1 mouse_genomes_project 1 179784035 179787080 + Lefty2 protein_coding retained_intron MGP_AJ_T0020015.1 MGP_AJ_G0016043.1 mouse_genomes_project 1 56860450 56876838 + Stradb protein_coding retained_intron MGP_AJ_T0020016.1 MGP_AJ_G0016043.1 mouse_genomes_project 1 56860450 56883190 + Stradb protein_coding retained_intron MGP_AJ_T0020017.1 MGP_AJ_G0016043.1 mouse_genomes_project 1 56860450 56886855 + MGP_AJ_P0020017 Stradb protein_coding protein_coding MGP_AJ_T0020018.1 MGP_AJ_G0016043.1 mouse_genomes_project 1 56860450 56891059 + MGP_AJ_P0020018 Stradb protein_coding protein_coding MGP_AJ_T0020019.1 MGP_AJ_G0016043.1 mouse_genomes_project 1 56860450 56890466 + MGP_AJ_P0020019 Stradb protein_coding nonsense_mediated_decay MGP_AJ_T0020020.1 MGP_AJ_G0016043.1 mouse_genomes_project 1 56860450 56890341 + MGP_AJ_P0020020 Stradb protein_coding nonsense_mediated_decay MGP_AJ_T0020021.1 MGP_AJ_G0016043.1 mouse_genomes_project 1 56886400 56889703 + MGP_AJ_P0020021 Stradb protein_coding protein_coding MGP_AJ_T0000713.1 MGP_AJ_G0000652.1 mouse_genomes_project 1 159237837 159241841 + TEC TEC MGP_AJ_T0000491.1 MGP_AJ_G0000432.1 mouse_genomes_project 1 59624498 59625863 + TEC TEC MGP_AJ_T0019012.1 MGP_AJ_G0015841.1 mouse_genomes_project 1 14291601 14330714 - MGP_AJ_P0019012 Jph1 protein_coding nonsense_mediated_decay MGP_AJ_T0019013.1 MGP_AJ_G0015841.1 mouse_genomes_project 1 14321502 14433193 - MGP_AJ_P0019013 Jph1 protein_coding protein_coding MGP_AJ_T0022474.1 MGP_AJ_G0016546.1 mouse_genomes_project 1 142198743 142226678 - MGP_AJ_P0022474 Trove2 protein_coding protein_coding MGP_AJ_T0022475.1 MGP_AJ_G0016546.1 mouse_genomes_project 1 142206225 142226532 - Trove2 protein_coding retained_intron MGP_AJ_T0023744.1 MGP_AJ_G0016828.1 mouse_genomes_project 1 176500432 176523663 + MGP_AJ_P0023744 1700016C15Rik protein_coding protein_coding MGP_AJ_T0009524.1 MGP_AJ_G0007646.1 mouse_genomes_project 1 99278324 99278433 + Gm25537 miRNA miRNA MGP_AJ_T0020929.1 MGP_AJ_G0016210.1 mouse_genomes_project 1 82332283 82646239 - MGP_AJ_P0020929 Dner protein_coding protein_coding MGP_AJ_T0020930.1 MGP_AJ_G0016210.1 mouse_genomes_project 1 82488736 82646037 - Dner protein_coding retained_intron MGP_AJ_T0020931.1 MGP_AJ_G0016210.1 mouse_genomes_project 1 82529573 82589728 - MGP_AJ_P0020931 Dner protein_coding protein_coding MGP_AJ_T0020932.1 MGP_AJ_G0016210.1 mouse_genomes_project 1 82531862 82573089 - MGP_AJ_P0020932 Dner protein_coding protein_coding MGP_AJ_T0012019.1 MGP_AJ_G0010114.1 mouse_genomes_project 1 47827149 47828605 + processed_pseudogene processed_pseudogene MGP_AJ_T0019349.1 MGP_AJ_G0015916.1 mouse_genomes_project 1 34374510 34393215 + MGP_AJ_P0019349 protein_coding unknown_likely_coding MGP_AJ_T0019350.1 MGP_AJ_G0015916.1 mouse_genomes_project 1 34376869 34380953 + MGP_AJ_P0019350 protein_coding protein_coding MGP_AJ_T0019351.1 MGP_AJ_G0015916.1 mouse_genomes_project 1 34380877 34382261 + protein_coding retained_intron MGP_AJ_T0019352.1 MGP_AJ_G0015916.1 mouse_genomes_project 1 34389376 34393206 + protein_coding retained_intron MGP_AJ_T0020446.1 MGP_AJ_G0016123.1 mouse_genomes_project 1 72091823 72114248 + MGP_AJ_P0020446 Rufy4 protein_coding protein_coding MGP_AJ_T0020447.1 MGP_AJ_G0016123.1 mouse_genomes_project 1 72091861 72113798 + MGP_AJ_P0020447 Rufy4 protein_coding protein_coding MGP_AJ_T0022408.1 MGP_AJ_G0016532.1 mouse_genomes_project 1 137344369 137349237 - MGP_AJ_P0022408 2310009B15Rik protein_coding protein_coding MGP_AJ_T0022409.1 MGP_AJ_G0016532.1 mouse_genomes_project 1 137344370 137346737 - 2310009B15Rik protein_coding retained_intron MGP_AJ_T0022410.1 MGP_AJ_G0016532.1 mouse_genomes_project 1 137344419 137349232 - MGP_AJ_P0022410 2310009B15Rik protein_coding nonsense_mediated_decay MGP_AJ_T0005909.1 MGP_AJ_G0004954.1 mouse_genomes_project 1 132893691 132898623 + Platr1 lincRNA lincRNA MGP_AJ_T0099235.1 MGP_AJ_G0037201.1 mouse_genomes_project 1 183461526 183461624 - Gm23349 snRNA snRNA MGP_AJ_T0023060.1 MGP_AJ_G0016649.1 mouse_genomes_project 1 161463129 161496628 - MGP_AJ_P0023060 Fmo3 protein_coding unknown_likely_coding MGP_AJ_T0023061.1 MGP_AJ_G0016649.1 mouse_genomes_project 1 161472477 161494632 - Fmo3 protein_coding retained_intron MGP_AJ_T0098873.1 MGP_AJ_G0036856.1 mouse_genomes_project 1 87767345 87775213 + Gm28499 sense_intronic sense_intronic MGP_AJ_T0022438.1 MGP_AJ_G0016539.1 mouse_genomes_project 1 138197037 138263659 - MGP_AJ_P0022438 protein_coding protein_coding MGP_AJ_T0022439.1 MGP_AJ_G0016539.1 mouse_genomes_project 1 138197037 138263742 - MGP_AJ_P0022439 protein_coding protein_coding MGP_AJ_T0022440.1 MGP_AJ_G0016539.1 mouse_genomes_project 1 138197046 138263652 - MGP_AJ_P0022440 protein_coding protein_coding MGP_AJ_T0020042.1 MGP_AJ_G0016047.1 mouse_genomes_project 1 57057221 57133923 - MGP_AJ_P0020042 Als2 protein_coding protein_coding MGP_AJ_T0020043.1 MGP_AJ_G0016047.1 mouse_genomes_project 1 57058353 57133785 - MGP_AJ_P0020043 Als2 protein_coding protein_coding MGP_AJ_T0020044.1 MGP_AJ_G0016047.1 mouse_genomes_project 1 57086714 57133923 - Als2 protein_coding retained_intron MGP_AJ_T0020045.1 MGP_AJ_G0016047.1 mouse_genomes_project 1 57111670 57133918 - MGP_AJ_P0020045 Als2 protein_coding protein_coding MGP_AJ_T0020046.1 MGP_AJ_G0016047.1 mouse_genomes_project 1 57112363 57115146 - Als2 protein_coding retained_intron MGP_AJ_T0023999.1 MGP_AJ_G0016881.1 mouse_genomes_project 1 182183719 182185651 + Aida protein_coding retained_intron MGP_AJ_T0024000.1 MGP_AJ_G0016881.1 mouse_genomes_project 1 182184178 182215768 + MGP_AJ_P0024000 Aida protein_coding protein_coding MGP_AJ_T0024001.1 MGP_AJ_G0016881.1 mouse_genomes_project 1 182184456 182191060 + Aida protein_coding processed_transcript MGP_AJ_T0024002.1 MGP_AJ_G0016881.1 mouse_genomes_project 1 182184534 182213900 + MGP_AJ_P0024002 Aida protein_coding protein_coding MGP_AJ_T0024003.1 MGP_AJ_G0016881.1 mouse_genomes_project 1 182184699 182205161 + MGP_AJ_P0024003 Aida protein_coding nonsense_mediated_decay MGP_AJ_T0024004.1 MGP_AJ_G0016881.1 mouse_genomes_project 1 182190977 182210702 + Aida protein_coding retained_intron MGP_AJ_T0024005.1 MGP_AJ_G0016881.1 mouse_genomes_project 1 182192636 182213899 + Aida protein_coding retained_intron MGP_AJ_T0024006.1 MGP_AJ_G0016881.1 mouse_genomes_project 1 182192772 182205455 + Aida protein_coding retained_intron MGP_AJ_T0024007.1 MGP_AJ_G0016881.1 mouse_genomes_project 1 182210502 182211215 + Aida protein_coding retained_intron MGP_AJ_T0020058.1 MGP_AJ_G0016051.1 mouse_genomes_project 1 57489857 57576051 - Sumo1 protein_coding processed_transcript MGP_AJ_T0020063.1 MGP_AJ_G0016051.1 mouse_genomes_project 1 57542369 57576093 - MGP_AJ_P0020063 Sumo1 protein_coding protein_coding MGP_AJ_T0020064.1 MGP_AJ_G0016051.1 mouse_genomes_project 1 57542890 57575998 - MGP_AJ_P0020064 Sumo1 protein_coding protein_coding MGP_AJ_T0020065.1 MGP_AJ_G0016051.1 mouse_genomes_project 1 57548191 57576093 - Sumo1 protein_coding retained_intron MGP_AJ_T0023338.1 MGP_AJ_G0016720.1 mouse_genomes_project 1 169592955 169599838 - Fcgr3 protein_coding retained_intron MGP_AJ_T0023339.1 MGP_AJ_G0016720.1 mouse_genomes_project 1 169592956 169602534 - MGP_AJ_P0023339 Fcgr3 protein_coding protein_coding MGP_AJ_T0023340.1 MGP_AJ_G0016720.1 mouse_genomes_project 1 169592985 169602534 - MGP_AJ_P0023340 Fcgr3 protein_coding protein_coding MGP_AJ_T0101922.1 MGP_AJ_G0039780.1 mouse_genomes_project 1 18691403 18705367 - transcribed_unprocessed_pseudogene processed_transcript MGP_AJ_T0101923.1 MGP_AJ_G0039780.1 mouse_genomes_project 1 18691795 18705200 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_AJ_T0101924.1 MGP_AJ_G0039780.1 mouse_genomes_project 1 18696137 18705302 - transcribed_unprocessed_pseudogene processed_transcript MGP_AJ_T0016968.1 MGP_AJ_G0015062.1 mouse_genomes_project 1 6864372 6937473 - 2610203C22Rik processed_transcript antisense MGP_AJ_T0016969.1 MGP_AJ_G0015062.1 mouse_genomes_project 1 6868544 6937518 - 2610203C22Rik processed_transcript retained_intron MGP_AJ_T0016970.1 MGP_AJ_G0015062.1 mouse_genomes_project 1 6906009 6937525 - 2610203C22Rik processed_transcript antisense MGP_AJ_T0016971.1 MGP_AJ_G0015062.1 mouse_genomes_project 1 6906614 6937556 - 2610203C22Rik processed_transcript antisense MGP_AJ_T0016972.1 MGP_AJ_G0015062.1 mouse_genomes_project 1 6909039 6937545 - 2610203C22Rik processed_transcript antisense MGP_AJ_T0020051.1 MGP_AJ_G0016049.1 mouse_genomes_project 1 57379335 57383867 + MGP_AJ_P0020051 Fzd7 protein_coding protein_coding MGP_AJ_T0018751.1 MGP_AJ_G0015798.1 mouse_genomes_project 1 2736285 2739127 + Oprk1 protein_coding retained_intron MGP_AJ_T0018752.1 MGP_AJ_G0015798.1 mouse_genomes_project 1 2736312 2754151 + MGP_AJ_P0018752 Oprk1 protein_coding protein_coding MGP_AJ_T0018753.1 MGP_AJ_G0015798.1 mouse_genomes_project 1 2736376 2750886 + MGP_AJ_P0018753 Oprk1 protein_coding protein_coding MGP_AJ_T0018754.1 MGP_AJ_G0015798.1 mouse_genomes_project 1 2736760 2752034 + MGP_AJ_P0018754 Oprk1 protein_coding protein_coding MGP_AJ_T0018755.1 MGP_AJ_G0015798.1 mouse_genomes_project 1 2744521 2751173 + Oprk1 protein_coding retained_intron MGP_AJ_T0006052.1 MGP_AJ_G0005065.1 mouse_genomes_project 1 189492527 189502750 + Gm30932 lincRNA lincRNA MGP_AJ_T0012378.1 MGP_AJ_G0010473.1 mouse_genomes_project 1 192336337 192336740 + processed_pseudogene processed_pseudogene MGP_AJ_T0011915.1 MGP_AJ_G0010010.1 mouse_genomes_project 1 18948872 18949812 - processed_pseudogene processed_pseudogene MGP_AJ_T0099236.1 MGP_AJ_G0037202.1 mouse_genomes_project 1 187635399 187635503 + Gm25269 snRNA snRNA MGP_AJ_T0099185.1 MGP_AJ_G0037151.1 mouse_genomes_project 1 85452653 85452748 - Gm23504 snRNA snRNA MGP_AJ_T0012280.1 MGP_AJ_G0010375.1 mouse_genomes_project 1 148531287 148531889 + processed_pseudogene processed_pseudogene MGP_AJ_T0021703.1 MGP_AJ_G0016379.1 mouse_genomes_project 1 117896787 117899611 + MGP_AJ_P0021703 Tmem185b protein_coding protein_coding MGP_AJ_T0021704.1 MGP_AJ_G0016379.1 mouse_genomes_project 1 117896800 117897857 + Tmem185b protein_coding processed_transcript MGP_AJ_T0012116.1 MGP_AJ_G0010211.1 mouse_genomes_project 1 78916623 78917090 + processed_pseudogene processed_pseudogene MGP_AJ_T0000530.1 MGP_AJ_G0000471.1 mouse_genomes_project 1 78687755 78689611 - TEC TEC MGP_AJ_T0020495.1 MGP_AJ_G0016134.1 mouse_genomes_project 1 72379775 72408221 + MGP_AJ_P0020495 Vil1 protein_coding protein_coding MGP_AJ_T0020496.1 MGP_AJ_G0016134.1 mouse_genomes_project 1 72389964 72393929 + MGP_AJ_P0020496 Vil1 protein_coding protein_coding MGP_AJ_T0020497.1 MGP_AJ_G0016134.1 mouse_genomes_project 1 72392327 72393922 + Vil1 protein_coding retained_intron MGP_AJ_T0020498.1 MGP_AJ_G0016134.1 mouse_genomes_project 1 72394596 72396877 + Vil1 protein_coding retained_intron MGP_AJ_T0005686.1 MGP_AJ_G0004786.1 mouse_genomes_project 1 34347436 34355958 - Gm33533 lincRNA lincRNA MGP_AJ_T0024303.1 MGP_AJ_G0016940.1 mouse_genomes_project 1 192057448 192058687 + Lamb3 protein_coding retained_intron MGP_AJ_T0024304.1 MGP_AJ_G0016940.1 mouse_genomes_project 1 192057474 192201156 + MGP_AJ_P0024304 Lamb3 protein_coding protein_coding MGP_AJ_T0024305.1 MGP_AJ_G0016940.1 mouse_genomes_project 1 192057481 192181460 + MGP_AJ_P0024305 Lamb3 protein_coding protein_coding MGP_AJ_T0024306.1 MGP_AJ_G0016940.1 mouse_genomes_project 1 192057499 192106350 + Lamb3 protein_coding processed_transcript MGP_AJ_T0024315.1 MGP_AJ_G0016940.1 mouse_genomes_project 1 192126761 192133905 + Lamb3 protein_coding processed_transcript MGP_AJ_T0024316.1 MGP_AJ_G0016940.1 mouse_genomes_project 1 192157502 192201156 + MGP_AJ_P0024316 Lamb3 protein_coding protein_coding MGP_AJ_T0024317.1 MGP_AJ_G0016940.1 mouse_genomes_project 1 192157730 192158925 + Lamb3 protein_coding processed_transcript MGP_AJ_T0024318.1 MGP_AJ_G0016940.1 mouse_genomes_project 1 192157752 192201153 + MGP_AJ_P0024318 Lamb3 protein_coding protein_coding MGP_AJ_T0024319.1 MGP_AJ_G0016940.1 mouse_genomes_project 1 192176169 192181459 + Lamb3 protein_coding processed_transcript MGP_AJ_T0100430.1 MGP_AJ_G0038396.1 mouse_genomes_project 1 57610056 57610137 + Gm26287 snoRNA snoRNA MGP_AJ_T0023095.1 MGP_AJ_G0016660.1 mouse_genomes_project 1 162625298 162660887 + MGP_AJ_P0023095 Selp protein_coding protein_coding MGP_AJ_T0023096.1 MGP_AJ_G0016660.1 mouse_genomes_project 1 162652179 162653654 + Selp protein_coding retained_intron MGP_AJ_T0023097.1 MGP_AJ_G0016660.1 mouse_genomes_project 1 162652738 162660002 + MGP_AJ_P0023097 Selp protein_coding nonsense_mediated_decay MGP_AJ_T0023098.1 MGP_AJ_G0016660.1 mouse_genomes_project 1 162655563 162660872 + Selp protein_coding retained_intron MGP_AJ_T0023099.1 MGP_AJ_G0016660.1 mouse_genomes_project 1 162657622 162660015 + Selp protein_coding retained_intron MGP_AJ_T0012084.1 MGP_AJ_G0010179.1 mouse_genomes_project 1 63441771 63442545 - processed_pseudogene processed_pseudogene MGP_AJ_T0005817.1 MGP_AJ_G0004876.1 mouse_genomes_project 1 83975783 83990423 - Gm28100 lincRNA lincRNA MGP_AJ_T0023377.1 MGP_AJ_G0016728.1 mouse_genomes_project 1 169811000 169815642 - MGP_AJ_P0023377 Fcer1g protein_coding protein_coding MGP_AJ_T0023378.1 MGP_AJ_G0016728.1 mouse_genomes_project 1 169811008 169815584 - MGP_AJ_P0023378 Fcer1g protein_coding protein_coding MGP_AJ_T0023379.1 MGP_AJ_G0016728.1 mouse_genomes_project 1 169812473 169815616 - Fcer1g protein_coding retained_intron MGP_AJ_T0012102.1 MGP_AJ_G0010197.1 mouse_genomes_project 1 71477551 71478547 + processed_pseudogene processed_pseudogene MGP_AJ_T0020551.1 MGP_AJ_G0016142.1 mouse_genomes_project 1 72640100 72684686 + MGP_AJ_P0020551 Ttll4 protein_coding protein_coding MGP_AJ_T0020552.1 MGP_AJ_G0016142.1 mouse_genomes_project 1 72640105 72665677 + MGP_AJ_P0020552 Ttll4 protein_coding protein_coding MGP_AJ_T0020553.1 MGP_AJ_G0016142.1 mouse_genomes_project 1 72640172 72651608 + Ttll4 protein_coding retained_intron MGP_AJ_T0020554.1 MGP_AJ_G0016142.1 mouse_genomes_project 1 72640172 72662351 + MGP_AJ_P0020554 Ttll4 protein_coding protein_coding MGP_AJ_T0020555.1 MGP_AJ_G0016142.1 mouse_genomes_project 1 72659457 72678924 + MGP_AJ_P0020555 Ttll4 protein_coding protein_coding MGP_AJ_T0020556.1 MGP_AJ_G0016142.1 mouse_genomes_project 1 72665645 72668948 + Ttll4 protein_coding processed_transcript MGP_AJ_T0020557.1 MGP_AJ_G0016142.1 mouse_genomes_project 1 72666275 72668970 + Ttll4 protein_coding processed_transcript MGP_AJ_T0020558.1 MGP_AJ_G0016142.1 mouse_genomes_project 1 72669742 72670998 + Ttll4 protein_coding retained_intron MGP_AJ_T0020559.1 MGP_AJ_G0016142.1 mouse_genomes_project 1 72670392 72682779 + Ttll4 protein_coding processed_transcript MGP_AJ_T0020560.1 MGP_AJ_G0016142.1 mouse_genomes_project 1 72676159 72680825 + Ttll4 protein_coding retained_intron MGP_AJ_T0020561.1 MGP_AJ_G0016142.1 mouse_genomes_project 1 72676680 72678788 + Ttll4 protein_coding processed_transcript MGP_AJ_T0019255.1 MGP_AJ_G0015900.1 mouse_genomes_project 1 32448861 32473295 + MGP_AJ_P0019255 Plekhb2 protein_coding protein_coding MGP_AJ_T0019256.1 MGP_AJ_G0015900.1 mouse_genomes_project 1 32448877 32478927 + MGP_AJ_P0019256 Plekhb2 protein_coding protein_coding MGP_AJ_T0019257.1 MGP_AJ_G0015900.1 mouse_genomes_project 1 32451214 32462826 + MGP_AJ_P0019257 Plekhb2 protein_coding protein_coding MGP_AJ_T0019258.1 MGP_AJ_G0015900.1 mouse_genomes_project 1 32477001 32478924 + Plekhb2 protein_coding processed_transcript MGP_AJ_T0011897.1 MGP_AJ_G0009992.1 mouse_genomes_project 1 14102030 14103890 - processed_pseudogene processed_pseudogene MGP_AJ_T0005997.1 MGP_AJ_G0005024.1 mouse_genomes_project 1 175062328 175065891 + Gm38101 lincRNA lincRNA MGP_AJ_T0019532.1 MGP_AJ_G0015951.1 mouse_genomes_project 1 38121160 38138423 + MGP_AJ_P0019532 Il1rl1 protein_coding protein_coding MGP_AJ_T0019533.1 MGP_AJ_G0015951.1 mouse_genomes_project 1 38128279 38133115 + MGP_AJ_P0019533 Il1rl1 protein_coding protein_coding MGP_AJ_T0019534.1 MGP_AJ_G0015951.1 mouse_genomes_project 1 38131334 38154368 + MGP_AJ_P0019534 Il1rl1 protein_coding protein_coding MGP_AJ_T0019535.1 MGP_AJ_G0015951.1 mouse_genomes_project 1 38131483 38139845 + MGP_AJ_P0019535 Il1rl1 protein_coding protein_coding MGP_AJ_T0019536.1 MGP_AJ_G0015951.1 mouse_genomes_project 1 38132335 38154349 + MGP_AJ_P0019536 Il1rl1 protein_coding protein_coding MGP_AJ_T0021066.1 MGP_AJ_G0016240.1 mouse_genomes_project 1 85218871 85220031 + Chrnd protein_coding retained_intron MGP_AJ_T0021067.1 MGP_AJ_G0016240.1 mouse_genomes_project 1 85218901 85229174 + MGP_AJ_P0021067 Chrnd protein_coding protein_coding MGP_AJ_T0021068.1 MGP_AJ_G0016240.1 mouse_genomes_project 1 85219108 85229173 + MGP_AJ_P0021068 Chrnd protein_coding protein_coding MGP_AJ_T0018969.1 MGP_AJ_G0015835.1 mouse_genomes_project 1 13429371 13457202 + MGP_AJ_P0018969 Rdh10 protein_coding protein_coding MGP_AJ_T0018970.1 MGP_AJ_G0015835.1 mouse_genomes_project 1 13454043 13456088 + Rdh10 protein_coding retained_intron MGP_AJ_T0022906.1 MGP_AJ_G0016624.1 mouse_genomes_project 1 158700056 158835111 - MGP_AJ_P0022906 Rabgap1l protein_coding protein_coding MGP_AJ_T0022907.1 MGP_AJ_G0016624.1 mouse_genomes_project 1 158706924 158713480 - Rabgap1l protein_coding retained_intron MGP_AJ_T0022908.1 MGP_AJ_G0016624.1 mouse_genomes_project 1 158707440 158733257 - MGP_AJ_P0022908 Rabgap1l protein_coding protein_coding MGP_AJ_T0022909.1 MGP_AJ_G0016624.1 mouse_genomes_project 1 158707492 158789458 - MGP_AJ_P0022909 Rabgap1l protein_coding protein_coding MGP_AJ_T0022910.1 MGP_AJ_G0016624.1 mouse_genomes_project 1 158707542 158769474 - Rabgap1l protein_coding processed_transcript MGP_AJ_T0022911.1 MGP_AJ_G0016624.1 mouse_genomes_project 1 158718392 158729733 - Rabgap1l protein_coding retained_intron MGP_AJ_T0022912.1 MGP_AJ_G0016624.1 mouse_genomes_project 1 158729716 158732571 - Rabgap1l protein_coding processed_transcript MGP_AJ_T0022913.1 MGP_AJ_G0016624.1 mouse_genomes_project 1 158738382 158791290 - MGP_AJ_P0022913 Rabgap1l protein_coding nonsense_mediated_decay MGP_AJ_T0022914.1 MGP_AJ_G0016624.1 mouse_genomes_project 1 158738743 158917734 - MGP_AJ_P0022914 Rabgap1l protein_coding protein_coding MGP_AJ_T0022915.1 MGP_AJ_G0016624.1 mouse_genomes_project 1 158739015 159275890 - MGP_AJ_P0022915 Rabgap1l protein_coding protein_coding MGP_AJ_T0022916.1 MGP_AJ_G0016624.1 mouse_genomes_project 1 158766018 158769661 - Rabgap1l protein_coding processed_transcript MGP_AJ_T0022917.1 MGP_AJ_G0016624.1 mouse_genomes_project 1 158770740 158775484 - Rabgap1l protein_coding processed_transcript MGP_AJ_T0022918.1 MGP_AJ_G0016624.1 mouse_genomes_project 1 158772452 158789896 - Rabgap1l protein_coding processed_transcript MGP_AJ_T0022919.1 MGP_AJ_G0016624.1 mouse_genomes_project 1 158917466 158930148 - Rabgap1l protein_coding retained_intron MGP_AJ_T0022920.1 MGP_AJ_G0016624.1 mouse_genomes_project 1 159153789 159275882 - MGP_AJ_P0022920 Rabgap1l protein_coding protein_coding MGP_AJ_T0022921.1 MGP_AJ_G0016624.1 mouse_genomes_project 1 159218365 159276153 - MGP_AJ_P0022921 Rabgap1l protein_coding protein_coding MGP_AJ_T0012078.1 MGP_AJ_G0010173.1 mouse_genomes_project 1 62889600 62890712 - processed_pseudogene processed_pseudogene MGP_AJ_T0000405.1 MGP_AJ_G0000347.1 mouse_genomes_project 1 22736544 22739077 - TEC TEC MGP_AJ_T0012187.1 MGP_AJ_G0010282.1 mouse_genomes_project 1 108897687 108898509 + processed_pseudogene processed_pseudogene MGP_AJ_T0000753.1 MGP_AJ_G0000692.1 mouse_genomes_project 1 175908836 175910129 - TEC TEC MGP_AJ_T0000790.1 MGP_AJ_G0000727.1 mouse_genomes_project 1 188799325 188801959 - TEC TEC MGP_AJ_T0099219.1 MGP_AJ_G0037185.1 mouse_genomes_project 1 165859062 165859169 + Gm24182 snRNA snRNA MGP_AJ_T0000389.1 MGP_AJ_G0000333.1 mouse_genomes_project 1 13949894 13952874 + TEC TEC MGP_AJ_T0005662.1 MGP_AJ_G0004765.1 mouse_genomes_project 1 20695723 20696122 + Gm27028 lincRNA lincRNA MGP_AJ_T0018878.1 MGP_AJ_G0015816.1 mouse_genomes_project 1 7462366 7557544 - MGP_AJ_P0018878 Arfgef1 protein_coding protein_coding MGP_AJ_T0018879.1 MGP_AJ_G0015816.1 mouse_genomes_project 1 7463485 7466497 - Arfgef1 protein_coding retained_intron MGP_AJ_T0018880.1 MGP_AJ_G0015816.1 mouse_genomes_project 1 7472200 7479326 - Arfgef1 protein_coding retained_intron MGP_AJ_T0018881.1 MGP_AJ_G0015816.1 mouse_genomes_project 1 7481194 7484856 - Arfgef1 protein_coding retained_intron MGP_AJ_T0018882.1 MGP_AJ_G0015816.1 mouse_genomes_project 1 7485552 7486102 - Arfgef1 protein_coding retained_intron MGP_AJ_T0018883.1 MGP_AJ_G0015816.1 mouse_genomes_project 1 7497870 7557544 - MGP_AJ_P0018883 Arfgef1 protein_coding protein_coding MGP_AJ_T0018884.1 MGP_AJ_G0015816.1 mouse_genomes_project 1 7533905 7535067 - Arfgef1 protein_coding retained_intron MGP_AJ_T0018885.1 MGP_AJ_G0015816.1 mouse_genomes_project 1 7534120 7539173 - Arfgef1 protein_coding retained_intron MGP_AJ_T0000582.1 MGP_AJ_G0000523.1 mouse_genomes_project 1 106797362 106800120 + TEC TEC MGP_AJ_T0011866.1 MGP_AJ_G0009961.1 mouse_genomes_project 1 4693862 4695039 + processed_pseudogene processed_pseudogene MGP_AJ_T0011961.1 MGP_AJ_G0010056.1 mouse_genomes_project 1 32214774 32215197 - processed_pseudogene processed_pseudogene MGP_AJ_T0012077.1 MGP_AJ_G0010172.1 mouse_genomes_project 1 62829150 62829529 + processed_pseudogene processed_pseudogene MGP_AJ_T0023232.1 MGP_AJ_G0016689.1 mouse_genomes_project 1 165172798 165192556 - MGP_AJ_P0023232 Fmo9 protein_coding protein_coding MGP_AJ_T0023233.1 MGP_AJ_G0016689.1 mouse_genomes_project 1 165174031 165188398 - MGP_AJ_P0023233 Fmo9 protein_coding protein_coding MGP_AJ_T0005871.1 MGP_AJ_G0004923.1 mouse_genomes_project 1 112204621 112280632 - 9330185C12Rik lincRNA lincRNA MGP_AJ_T0000528.1 MGP_AJ_G0000469.1 mouse_genomes_project 1 78275784 78277602 - TEC TEC MGP_AJ_T0020509.1 MGP_AJ_G0016137.1 mouse_genomes_project 1 72518078 72545287 + MGP_AJ_P0020509 Plcd4 protein_coding protein_coding MGP_AJ_T0020510.1 MGP_AJ_G0016137.1 mouse_genomes_project 1 72518078 72545287 + MGP_AJ_P0020510 Plcd4 protein_coding protein_coding MGP_AJ_T0020511.1 MGP_AJ_G0016137.1 mouse_genomes_project 1 72518078 72545287 + MGP_AJ_P0020511 Plcd4 protein_coding nonsense_mediated_decay MGP_AJ_T0020512.1 MGP_AJ_G0016137.1 mouse_genomes_project 1 72518093 72538105 + Plcd4 protein_coding retained_intron MGP_AJ_T0020513.1 MGP_AJ_G0016137.1 mouse_genomes_project 1 72518093 72543470 + MGP_AJ_P0020513 Plcd4 protein_coding protein_coding MGP_AJ_T0020514.1 MGP_AJ_G0016137.1 mouse_genomes_project 1 72518093 72543470 + MGP_AJ_P0020514 Plcd4 protein_coding protein_coding MGP_AJ_T0020515.1 MGP_AJ_G0016137.1 mouse_genomes_project 1 72519550 72521462 + Plcd4 protein_coding retained_intron MGP_AJ_T0020516.1 MGP_AJ_G0016137.1 mouse_genomes_project 1 72519554 72543470 + MGP_AJ_P0020516 Plcd4 protein_coding nonsense_mediated_decay MGP_AJ_T0020517.1 MGP_AJ_G0016137.1 mouse_genomes_project 1 72519554 72543470 + MGP_AJ_P0020517 Plcd4 protein_coding protein_coding MGP_AJ_T0020518.1 MGP_AJ_G0016137.1 mouse_genomes_project 1 72537925 72542794 + Plcd4 protein_coding processed_transcript MGP_AJ_T0020519.1 MGP_AJ_G0016137.1 mouse_genomes_project 1 72541929 72543119 + Plcd4 protein_coding retained_intron MGP_AJ_T0023312.1 MGP_AJ_G0016712.1 mouse_genomes_project 1 169183944 169222121 + MGP_AJ_P0023312 Olfml2b protein_coding protein_coding MGP_AJ_T0009557.1 MGP_AJ_G0007679.1 mouse_genomes_project 1 175544408 175544507 - Mir350 miRNA miRNA MGP_AJ_T0002752.1 MGP_AJ_G0002618.1 mouse_genomes_project 1 7303020 7314098 + Gm15818 antisense antisense MGP_AJ_T0100419.1 MGP_AJ_G0038385.1 mouse_genomes_project 1 37249518 37249648 - Gm23722 snoRNA snoRNA MGP_AJ_T0005932.1 MGP_AJ_G0004972.1 mouse_genomes_project 1 137894048 137899615 + Gm34816 lincRNA lincRNA MGP_AJ_T0022500.1 MGP_AJ_G0016552.1 mouse_genomes_project 1 143168411 143191159 - MGP_AJ_P0022500 Rgs18 protein_coding protein_coding MGP_AJ_T0020577.1 MGP_AJ_G0016149.1 mouse_genomes_project 1 72873731 72876982 - MGP_AJ_P0020577 Cryba2 protein_coding protein_coding MGP_AJ_T0020578.1 MGP_AJ_G0016149.1 mouse_genomes_project 1 72874327 72876731 - MGP_AJ_P0020578 Cryba2 protein_coding nonsense_mediated_decay MGP_AJ_T0005931.1 MGP_AJ_G0004971.1 mouse_genomes_project 1 137865606 137888626 + 4933436E23Rik lincRNA lincRNA MGP_AJ_T0011854.1 MGP_AJ_G0009949.1 mouse_genomes_project 1 2767618 2768012 - processed_pseudogene processed_pseudogene MGP_AJ_T0021009.1 MGP_AJ_G0016224.1 mouse_genomes_project 1 84139026 84170256 + MGP_AJ_P0021009 protein_coding nonsense_mediated_decay MGP_AJ_T0022046.1 MGP_AJ_G0016456.1 mouse_genomes_project 1 130921521 130948523 + MGP_AJ_P0022046 Rbbp5 protein_coding protein_coding MGP_AJ_T0022047.1 MGP_AJ_G0016456.1 mouse_genomes_project 1 130921591 130949692 + MGP_AJ_P0022047 Rbbp5 protein_coding protein_coding MGP_AJ_T0022048.1 MGP_AJ_G0016456.1 mouse_genomes_project 1 130921647 130934645 + MGP_AJ_P0022048 Rbbp5 protein_coding protein_coding MGP_AJ_T0022049.1 MGP_AJ_G0016456.1 mouse_genomes_project 1 130921665 130947825 + MGP_AJ_P0022049 Rbbp5 protein_coding protein_coding MGP_AJ_T0022050.1 MGP_AJ_G0016456.1 mouse_genomes_project 1 130921798 130934729 + MGP_AJ_P0022050 Rbbp5 protein_coding protein_coding MGP_AJ_T0022051.1 MGP_AJ_G0016456.1 mouse_genomes_project 1 130947765 130949688 + Rbbp5 protein_coding retained_intron MGP_AJ_T0021398.1 MGP_AJ_G0016313.1 mouse_genomes_project 1 91224906 91231591 + MGP_AJ_P0021398 Aqp12 protein_coding protein_coding MGP_AJ_T0019300.1 MGP_AJ_G0015907.1 mouse_genomes_project 1 34014227 34034232 - MGP_AJ_P0019300 Lman2l protein_coding protein_coding MGP_AJ_T0019301.1 MGP_AJ_G0015907.1 mouse_genomes_project 1 34016421 34039843 - MGP_AJ_P0019301 Lman2l protein_coding protein_coding MGP_AJ_T0019302.1 MGP_AJ_G0015907.1 mouse_genomes_project 1 34017550 34036444 - Lman2l protein_coding retained_intron MGP_AJ_T0019303.1 MGP_AJ_G0015907.1 mouse_genomes_project 1 34017550 34039843 - MGP_AJ_P0019303 Lman2l protein_coding nonsense_mediated_decay MGP_AJ_T0019304.1 MGP_AJ_G0015907.1 mouse_genomes_project 1 34017550 34039843 - MGP_AJ_P0019304 Lman2l protein_coding protein_coding MGP_AJ_T0019305.1 MGP_AJ_G0015907.1 mouse_genomes_project 1 34018896 34022757 - MGP_AJ_P0019305 Lman2l protein_coding protein_coding MGP_AJ_T0019306.1 MGP_AJ_G0015907.1 mouse_genomes_project 1 34022782 34039843 - MGP_AJ_P0019306 Lman2l protein_coding nonsense_mediated_decay MGP_AJ_T0019307.1 MGP_AJ_G0015907.1 mouse_genomes_project 1 34038320 34039829 - Lman2l protein_coding retained_intron MGP_AJ_T0019037.1 MGP_AJ_G0015850.1 mouse_genomes_project 1 17465630 18015214 - MGP_AJ_P0019037 Pkhd1 protein_coding protein_coding MGP_AJ_T0019038.1 MGP_AJ_G0015850.1 mouse_genomes_project 1 17780981 17815630 - Pkhd1 protein_coding processed_transcript MGP_AJ_T0019039.1 MGP_AJ_G0015850.1 mouse_genomes_project 1 17981563 18015214 - Pkhd1 protein_coding retained_intron MGP_AJ_T0019040.1 MGP_AJ_G0015850.1 mouse_genomes_project 1 18003310 18015190 - Pkhd1 protein_coding processed_transcript MGP_AJ_T0099175.1 MGP_AJ_G0037141.1 mouse_genomes_project 1 67842104 67842230 - Gm23879 snRNA snRNA MGP_AJ_T0023352.1 MGP_AJ_G0016723.1 mouse_genomes_project 1 169732659 169743047 + MGP_AJ_P0023352 Mpz protein_coding protein_coding MGP_AJ_T0023353.1 MGP_AJ_G0016723.1 mouse_genomes_project 1 169737452 169742439 + MGP_AJ_P0023353 Mpz protein_coding protein_coding MGP_AJ_T0023354.1 MGP_AJ_G0016723.1 mouse_genomes_project 1 169741525 169742162 + Mpz protein_coding processed_transcript MGP_AJ_T0023355.1 MGP_AJ_G0016723.1 mouse_genomes_project 1 169741634 169742177 + Mpz protein_coding processed_transcript MGP_AJ_T0011239.1 MGP_AJ_G0009361.1 mouse_genomes_project 1 13222766 13223069 + Gm23259 misc_RNA misc_RNA MGP_AJ_T0059855.1 MGP_AJ_G0026981.1 mouse_genomes_project 2 180070665 180073503 + MGP_AJ_P0059855 BC051628 protein_coding protein_coding MGP_AJ_T0059856.1 MGP_AJ_G0026981.1 mouse_genomes_project 2 180070691 180073098 + MGP_AJ_P0059856 BC051628 protein_coding protein_coding MGP_AJ_T0055281.1 MGP_AJ_G0025800.1 mouse_genomes_project 2 68719041 68719528 - MGP_AJ_P0055281 protein_coding protein_coding MGP_AJ_T0010386.1 MGP_AJ_G0008508.1 mouse_genomes_project 2 24484260 24484342 - Mir7578 miRNA miRNA MGP_AJ_T0101069.1 MGP_AJ_G0039035.1 mouse_genomes_project 2 128316612 128316682 + Gm23650 snoRNA snoRNA MGP_AJ_T0056662.1 MGP_AJ_G0026211.1 mouse_genomes_project 2 108769527 108791438 - MGP_AJ_P0056662 Gm15130 protein_coding protein_coding MGP_AJ_T0058359.1 MGP_AJ_G0026642.1 mouse_genomes_project 2 151029789 151030949 + MGP_AJ_P0058359 Id1 protein_coding protein_coding MGP_AJ_T0058360.1 MGP_AJ_G0026642.1 mouse_genomes_project 2 151029789 151030949 + MGP_AJ_P0058360 Id1 protein_coding protein_coding MGP_AJ_T0011509.1 MGP_AJ_G0009631.1 mouse_genomes_project 2 102792926 102793164 - Gm27308 misc_RNA misc_RNA MGP_AJ_T0004121.1 MGP_AJ_G0003642.1 mouse_genomes_project 2 145294581 145295587 + 6430503K07Rik antisense antisense MGP_AJ_T0055528.1 MGP_AJ_G0025851.1 mouse_genomes_project 2 75321600 75387814 - MGP_AJ_P0055528 Cwc22 protein_coding protein_coding MGP_AJ_T0055529.1 MGP_AJ_G0025851.1 mouse_genomes_project 2 75335911 75388009 - MGP_AJ_P0055529 Cwc22 protein_coding protein_coding MGP_AJ_T0055530.1 MGP_AJ_G0025851.1 mouse_genomes_project 2 75335911 75387987 - MGP_AJ_P0055530 Cwc22 protein_coding protein_coding MGP_AJ_T0055531.1 MGP_AJ_G0025851.1 mouse_genomes_project 2 75336024 75365521 - Cwc22 protein_coding processed_transcript MGP_AJ_T0055532.1 MGP_AJ_G0025851.1 mouse_genomes_project 2 75336024 75387817 - MGP_AJ_P0055532 Cwc22 protein_coding protein_coding MGP_AJ_T0055533.1 MGP_AJ_G0025851.1 mouse_genomes_project 2 75336026 75387987 - MGP_AJ_P0055533 Cwc22 protein_coding protein_coding MGP_AJ_T0055534.1 MGP_AJ_G0025851.1 mouse_genomes_project 2 75346743 75348806 - Cwc22 protein_coding processed_transcript MGP_AJ_T0055535.1 MGP_AJ_G0025851.1 mouse_genomes_project 2 75357419 75387833 - Cwc22 protein_coding processed_transcript MGP_AJ_T0055536.1 MGP_AJ_G0025851.1 mouse_genomes_project 2 75367035 75387817 - Cwc22 protein_coding processed_transcript MGP_AJ_T0055537.1 MGP_AJ_G0025851.1 mouse_genomes_project 2 75370277 75387572 - MGP_AJ_P0055537 Cwc22 protein_coding protein_coding MGP_AJ_T0055538.1 MGP_AJ_G0025851.1 mouse_genomes_project 2 75370363 75387823 - MGP_AJ_P0055538 Cwc22 protein_coding protein_coding MGP_AJ_T0055539.1 MGP_AJ_G0025851.1 mouse_genomes_project 2 75370419 75377653 - Cwc22 protein_coding processed_transcript MGP_AJ_T0055540.1 MGP_AJ_G0025851.1 mouse_genomes_project 2 75371765 75377711 - Cwc22 protein_coding processed_transcript MGP_AJ_T0058208.1 MGP_AJ_G0026592.1 mouse_genomes_project 2 148436883 148455069 + MGP_AJ_P0058208 protein_coding protein_coding MGP_AJ_T0059768.1 MGP_AJ_G0026965.1 mouse_genomes_project 2 179464669 179486167 - MGP_AJ_P0059768 Tcfl5 protein_coding protein_coding MGP_AJ_T0059769.1 MGP_AJ_G0026965.1 mouse_genomes_project 2 179465305 179486113 - MGP_AJ_P0059769 Tcfl5 protein_coding unknown_likely_coding MGP_AJ_T0059770.1 MGP_AJ_G0026965.1 mouse_genomes_project 2 179478777 179486113 - MGP_AJ_P0059770 Tcfl5 protein_coding nonsense_mediated_decay MGP_AJ_T0059771.1 MGP_AJ_G0026965.1 mouse_genomes_project 2 179480989 179485871 - Tcfl5 protein_coding retained_intron MGP_AJ_T0058501.1 MGP_AJ_G0026680.1 mouse_genomes_project 2 152726824 152775365 - MGP_AJ_P0058501 Snta1 protein_coding protein_coding MGP_AJ_T0058502.1 MGP_AJ_G0026680.1 mouse_genomes_project 2 152726824 152775347 - MGP_AJ_P0058502 Snta1 protein_coding protein_coding MGP_AJ_T0058503.1 MGP_AJ_G0026680.1 mouse_genomes_project 2 152766588 152775246 - Snta1 protein_coding processed_transcript MGP_AJ_T0099797.1 MGP_AJ_G0037763.1 mouse_genomes_project 2 156232770 156232869 + Gm23463 snRNA snRNA MGP_AJ_T0013710.1 MGP_AJ_G0011805.1 mouse_genomes_project 2 106204922 106205182 - processed_pseudogene processed_pseudogene MGP_AJ_T0011508.1 MGP_AJ_G0009630.1 mouse_genomes_project 2 102790763 102790885 - Gm27636 misc_RNA misc_RNA MGP_AJ_T0057474.1 MGP_AJ_G0026410.1 mouse_genomes_project 2 124862533 124906051 - MGP_AJ_P0057474 Sppl2a protein_coding protein_coding MGP_AJ_T0057475.1 MGP_AJ_G0026410.1 mouse_genomes_project 2 124866406 124893079 - MGP_AJ_P0057475 Sppl2a protein_coding protein_coding MGP_AJ_T0057476.1 MGP_AJ_G0026410.1 mouse_genomes_project 2 124887607 124896414 - Sppl2a protein_coding retained_intron MGP_AJ_T0013607.1 MGP_AJ_G0011702.1 mouse_genomes_project 2 74664090 74664523 - processed_pseudogene processed_pseudogene MGP_AJ_T0058341.1 MGP_AJ_G0026632.1 mouse_genomes_project 2 150826434 150827819 - MGP_AJ_P0058341 Defb29 protein_coding protein_coding MGP_AJ_T0057781.1 MGP_AJ_G0026484.1 mouse_genomes_project 2 129116580 129134926 - MGP_AJ_P0057781 Siglec1 protein_coding protein_coding MGP_AJ_T0057782.1 MGP_AJ_G0026484.1 mouse_genomes_project 2 129119414 129134926 - MGP_AJ_P0057782 Siglec1 protein_coding protein_coding MGP_AJ_T0057783.1 MGP_AJ_G0026484.1 mouse_genomes_project 2 129131733 129134926 - MGP_AJ_P0057783 Siglec1 protein_coding protein_coding MGP_AJ_T0017788.1 MGP_AJ_G0015409.1 mouse_genomes_project 2 82459045 82466332 - processed_transcript processed_transcript MGP_AJ_T0053933.1 MGP_AJ_G0025557.1 mouse_genomes_project 2 28079317 28089760 - MGP_AJ_P0053933 BC005624 protein_coding protein_coding MGP_AJ_T0053934.1 MGP_AJ_G0025557.1 mouse_genomes_project 2 28083785 28088325 - BC005624 protein_coding retained_intron MGP_AJ_T0053935.1 MGP_AJ_G0025557.1 mouse_genomes_project 2 28088721 28090020 - BC005624 protein_coding retained_intron MGP_AJ_T0007302.1 MGP_AJ_G0005985.1 mouse_genomes_project 2 113094240 113109716 - 4930528P14Rik lincRNA lincRNA MGP_AJ_T0102508.1 MGP_AJ_G0040250.1 mouse_genomes_project 2 88029555 88046212 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0102515.1 MGP_AJ_G0040257.1 mouse_genomes_project 2 120365722 120365998 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0010374.1 MGP_AJ_G0008496.1 mouse_genomes_project 2 15097567 15097625 + Mir7655 miRNA miRNA MGP_AJ_T0056565.1 MGP_AJ_G0026191.1 mouse_genomes_project 2 103346996 103376112 + MGP_AJ_P0056565 Pax6 protein_coding protein_coding MGP_AJ_T0056566.1 MGP_AJ_G0026191.1 mouse_genomes_project 2 103346996 103376112 + MGP_AJ_P0056566 Pax6 protein_coding protein_coding MGP_AJ_T0056567.1 MGP_AJ_G0026191.1 mouse_genomes_project 2 103347016 103375210 + Pax6 protein_coding processed_transcript MGP_AJ_T0056568.1 MGP_AJ_G0026191.1 mouse_genomes_project 2 103347031 103361775 + MGP_AJ_P0056568 Pax6 protein_coding protein_coding MGP_AJ_T0056569.1 MGP_AJ_G0026191.1 mouse_genomes_project 2 103349966 103375990 + MGP_AJ_P0056569 Pax6 protein_coding protein_coding MGP_AJ_T0056570.1 MGP_AJ_G0026191.1 mouse_genomes_project 2 103352024 103353942 + Pax6 protein_coding processed_transcript MGP_AJ_T0056571.1 MGP_AJ_G0026191.1 mouse_genomes_project 2 103353174 103354023 + Pax6 protein_coding processed_transcript MGP_AJ_T0056572.1 MGP_AJ_G0026191.1 mouse_genomes_project 2 103353256 103353888 + Pax6 protein_coding retained_intron MGP_AJ_T0056573.1 MGP_AJ_G0026191.1 mouse_genomes_project 2 103353256 103375991 + MGP_AJ_P0056573 Pax6 protein_coding protein_coding MGP_AJ_T0056574.1 MGP_AJ_G0026191.1 mouse_genomes_project 2 103353498 103376092 + MGP_AJ_P0056574 Pax6 protein_coding protein_coding MGP_AJ_T0056575.1 MGP_AJ_G0026191.1 mouse_genomes_project 2 103353578 103376109 + MGP_AJ_P0056575 Pax6 protein_coding protein_coding MGP_AJ_T0056576.1 MGP_AJ_G0026191.1 mouse_genomes_project 2 103353592 103375819 + MGP_AJ_P0056576 Pax6 protein_coding protein_coding MGP_AJ_T0056577.1 MGP_AJ_G0026191.1 mouse_genomes_project 2 103354178 103375819 + MGP_AJ_P0056577 Pax6 protein_coding protein_coding MGP_AJ_T0056578.1 MGP_AJ_G0026191.1 mouse_genomes_project 2 103354179 103376109 + MGP_AJ_P0056578 Pax6 protein_coding protein_coding MGP_AJ_T0056579.1 MGP_AJ_G0026191.1 mouse_genomes_project 2 103356321 103363701 + MGP_AJ_P0056579 Pax6 protein_coding protein_coding MGP_AJ_T0056580.1 MGP_AJ_G0026191.1 mouse_genomes_project 2 103357797 103370979 + Pax6 protein_coding processed_transcript MGP_AJ_T0056581.1 MGP_AJ_G0026191.1 mouse_genomes_project 2 103359642 103362888 + Pax6 protein_coding retained_intron MGP_AJ_T0056582.1 MGP_AJ_G0026191.1 mouse_genomes_project 2 103360393 103370990 + Pax6 protein_coding processed_transcript MGP_AJ_T0056583.1 MGP_AJ_G0026191.1 mouse_genomes_project 2 103360438 103371022 + Pax6 protein_coding processed_transcript MGP_AJ_T0056584.1 MGP_AJ_G0026191.1 mouse_genomes_project 2 103360465 103375101 + Pax6 protein_coding retained_intron MGP_AJ_T0056585.1 MGP_AJ_G0026191.1 mouse_genomes_project 2 103360467 103370487 + Pax6 protein_coding processed_transcript MGP_AJ_T0056586.1 MGP_AJ_G0026191.1 mouse_genomes_project 2 103360477 103371000 + Pax6 protein_coding processed_transcript MGP_AJ_T0056587.1 MGP_AJ_G0026191.1 mouse_genomes_project 2 103360567 103370458 + Pax6 protein_coding processed_transcript MGP_AJ_T0056588.1 MGP_AJ_G0026191.1 mouse_genomes_project 2 103361658 103362849 + Pax6 protein_coding retained_intron MGP_AJ_T0056589.1 MGP_AJ_G0026191.1 mouse_genomes_project 2 103363227 103376112 + Pax6 protein_coding processed_transcript MGP_AJ_T0056590.1 MGP_AJ_G0026191.1 mouse_genomes_project 2 103371239 103371882 + Pax6 protein_coding retained_intron MGP_AJ_T0007396.1 MGP_AJ_G0006062.1 mouse_genomes_project 2 164845020 164866038 + Gm11468 lincRNA lincRNA MGP_AJ_T0099746.1 MGP_AJ_G0037712.1 mouse_genomes_project 2 15204730 15204835 + Gm25147 snRNA snRNA MGP_AJ_T0011503.1 MGP_AJ_G0009625.1 mouse_genomes_project 2 69663516 69663824 + Zakit misc_RNA misc_RNA MGP_AJ_T0004145.1 MGP_AJ_G0003664.1 mouse_genomes_project 2 157127890 157128801 - Gm14205 antisense antisense MGP_AJ_T0054853.1 MGP_AJ_G0025724.1 mouse_genomes_project 2 55587844 55673297 - MGP_AJ_P0054853 Acvr1c protein_coding protein_coding MGP_AJ_T0054854.1 MGP_AJ_G0025724.1 mouse_genomes_project 2 55587844 55673297 - MGP_AJ_P0054854 Acvr1c protein_coding protein_coding MGP_AJ_T0054855.1 MGP_AJ_G0025724.1 mouse_genomes_project 2 55588027 55673225 - MGP_AJ_P0054855 Acvr1c protein_coding protein_coding MGP_AJ_T0054856.1 MGP_AJ_G0025724.1 mouse_genomes_project 2 55610930 55640537 - MGP_AJ_P0054856 Acvr1c protein_coding protein_coding MGP_AJ_T0010384.1 MGP_AJ_G0008506.1 mouse_genomes_project 2 23610748 23610806 - Mir126b miRNA miRNA MGP_AJ_T0004117.1 MGP_AJ_G0003638.1 mouse_genomes_project 2 142406257 142407438 + 1700108N11Rik antisense antisense MGP_AJ_T0010335.1 MGP_AJ_G0008457.1 mouse_genomes_project 2 7490755 7490874 + Mir669e miRNA miRNA MGP_AJ_T0058775.1 MGP_AJ_G0026727.1 mouse_genomes_project 2 154673965 154733532 + MGP_AJ_P0058775 protein_coding protein_coding MGP_AJ_T0058776.1 MGP_AJ_G0026727.1 mouse_genomes_project 2 154674141 154790855 + MGP_AJ_P0058776 protein_coding protein_coding MGP_AJ_T0058777.1 MGP_AJ_G0026727.1 mouse_genomes_project 2 154674233 154790853 + protein_coding processed_transcript MGP_AJ_T0058778.1 MGP_AJ_G0026727.1 mouse_genomes_project 2 154674253 154702324 + protein_coding retained_intron MGP_AJ_T0058779.1 MGP_AJ_G0026727.1 mouse_genomes_project 2 154674255 154733736 + protein_coding retained_intron MGP_AJ_T0058780.1 MGP_AJ_G0026727.1 mouse_genomes_project 2 154701174 154730865 + protein_coding processed_transcript MGP_AJ_T0058781.1 MGP_AJ_G0026727.1 mouse_genomes_project 2 154742395 154751987 + protein_coding processed_transcript MGP_AJ_T0058782.1 MGP_AJ_G0026727.1 mouse_genomes_project 2 154762357 154772490 + protein_coding processed_transcript MGP_AJ_T0058783.1 MGP_AJ_G0026727.1 mouse_genomes_project 2 154773706 154778561 + protein_coding retained_intron MGP_AJ_T0058784.1 MGP_AJ_G0026727.1 mouse_genomes_project 2 154775990 154778653 + protein_coding processed_transcript MGP_AJ_T0007326.1 MGP_AJ_G0006002.1 mouse_genomes_project 2 122665693 122668122 + Gm13994 lincRNA lincRNA MGP_AJ_T0007171.1 MGP_AJ_G0005878.1 mouse_genomes_project 2 25143529 25175754 + F730016J06Rik lincRNA lincRNA MGP_AJ_T0007172.1 MGP_AJ_G0005878.1 mouse_genomes_project 2 25143535 25161878 + F730016J06Rik lincRNA lincRNA MGP_AJ_T0007173.1 MGP_AJ_G0005878.1 mouse_genomes_project 2 25166233 25173226 + F730016J06Rik lincRNA lincRNA MGP_AJ_T0053846.1 MGP_AJ_G0025545.1 mouse_genomes_project 2 27478138 27486414 + MGP_AJ_P0053846 Dolpp1 protein_coding protein_coding MGP_AJ_T0053847.1 MGP_AJ_G0025545.1 mouse_genomes_project 2 27478300 27486412 + MGP_AJ_P0053847 Dolpp1 protein_coding protein_coding MGP_AJ_T0053848.1 MGP_AJ_G0025545.1 mouse_genomes_project 2 27478300 27486412 + MGP_AJ_P0053848 Dolpp1 protein_coding protein_coding MGP_AJ_T0053849.1 MGP_AJ_G0025545.1 mouse_genomes_project 2 27478312 27483200 + Dolpp1 protein_coding retained_intron MGP_AJ_T0053850.1 MGP_AJ_G0025545.1 mouse_genomes_project 2 27478314 27481796 + Dolpp1 protein_coding retained_intron MGP_AJ_T0053851.1 MGP_AJ_G0025545.1 mouse_genomes_project 2 27478323 27486413 + MGP_AJ_P0053851 Dolpp1 protein_coding nonsense_mediated_decay MGP_AJ_T0053852.1 MGP_AJ_G0025545.1 mouse_genomes_project 2 27478324 27482041 + Dolpp1 protein_coding retained_intron MGP_AJ_T0053853.1 MGP_AJ_G0025545.1 mouse_genomes_project 2 27478329 27485569 + MGP_AJ_P0053853 Dolpp1 protein_coding nonsense_mediated_decay MGP_AJ_T0053854.1 MGP_AJ_G0025545.1 mouse_genomes_project 2 27478338 27483698 + Dolpp1 protein_coding retained_intron MGP_AJ_T0053855.1 MGP_AJ_G0025545.1 mouse_genomes_project 2 27481482 27486412 + Dolpp1 protein_coding processed_transcript MGP_AJ_T0053856.1 MGP_AJ_G0025545.1 mouse_genomes_project 2 27483305 27485873 + Dolpp1 protein_coding processed_transcript MGP_AJ_T0053998.1 MGP_AJ_G0025565.1 mouse_genomes_project 2 28758167 28773894 + MGP_AJ_P0053998 Prdm12 protein_coding protein_coding MGP_AJ_T0013457.1 MGP_AJ_G0011552.1 mouse_genomes_project 2 19082030 19083523 + processed_pseudogene processed_pseudogene MGP_AJ_T0056993.1 MGP_AJ_G0026318.1 mouse_genomes_project 2 117846087 117861371 + MGP_AJ_P0056993 Gm28042 protein_coding nonsense_mediated_decay MGP_AJ_T0056995.1 MGP_AJ_G0026318.1 mouse_genomes_project 2 117846098 117861371 + MGP_AJ_P0056995 Gm28042 protein_coding protein_coding MGP_AJ_T0056996.1 MGP_AJ_G0026318.1 mouse_genomes_project 2 117846101 117859937 + MGP_AJ_P0056996 Gm28042 protein_coding protein_coding MGP_AJ_T0057000.1 MGP_AJ_G0026318.1 mouse_genomes_project 2 117850207 117853349 + MGP_AJ_P0057000 Gm28042 protein_coding nonsense_mediated_decay MGP_AJ_T0053191.1 MGP_AJ_G0025428.1 mouse_genomes_project 2 22484383 22487455 - MGP_AJ_P0053191 C8g protein_coding protein_coding MGP_AJ_T0053192.1 MGP_AJ_G0025428.1 mouse_genomes_project 2 22484383 22486346 - MGP_AJ_P0053192 C8g protein_coding protein_coding MGP_AJ_T0053193.1 MGP_AJ_G0025428.1 mouse_genomes_project 2 22484388 22485988 - C8g protein_coding processed_transcript MGP_AJ_T0053194.1 MGP_AJ_G0025428.1 mouse_genomes_project 2 22484388 22485235 - C8g protein_coding processed_transcript MGP_AJ_T0053195.1 MGP_AJ_G0025428.1 mouse_genomes_project 2 22484388 22485968 - C8g protein_coding processed_transcript MGP_AJ_T0053196.1 MGP_AJ_G0025428.1 mouse_genomes_project 2 22484390 22485976 - C8g protein_coding processed_transcript MGP_AJ_T0053197.1 MGP_AJ_G0025428.1 mouse_genomes_project 2 22484629 22485847 - C8g protein_coding processed_transcript MGP_AJ_T0017914.1 MGP_AJ_G0015469.1 mouse_genomes_project 2 167411670 167413637 + Gm14261 processed_transcript processed_transcript MGP_AJ_T0013525.1 MGP_AJ_G0011620.1 mouse_genomes_project 2 45709801 45710115 + processed_pseudogene processed_pseudogene MGP_AJ_T0058029.1 MGP_AJ_G0026541.1 mouse_genomes_project 2 141901156 141937768 - MGP_AJ_P0058029 Bfsp1 protein_coding protein_coding MGP_AJ_T0058030.1 MGP_AJ_G0026541.1 mouse_genomes_project 2 141901156 141937538 - MGP_AJ_P0058030 Bfsp1 protein_coding protein_coding MGP_AJ_T0010429.1 MGP_AJ_G0008551.1 mouse_genomes_project 2 89826474 89826572 + Mir1955 miRNA miRNA MGP_AJ_T0013772.1 MGP_AJ_G0011867.1 mouse_genomes_project 2 131261089 131261699 + processed_pseudogene processed_pseudogene MGP_AJ_T0058894.1 MGP_AJ_G0026749.1 mouse_genomes_project 2 156071474 156081470 - MGP_AJ_P0058894 Blcap protein_coding protein_coding MGP_AJ_T0058895.1 MGP_AJ_G0026749.1 mouse_genomes_project 2 156071474 156081446 - MGP_AJ_P0058895 Blcap protein_coding protein_coding MGP_AJ_T0058896.1 MGP_AJ_G0026749.1 mouse_genomes_project 2 156073213 156086169 - MGP_AJ_P0058896 Blcap protein_coding protein_coding MGP_AJ_T0058897.1 MGP_AJ_G0026749.1 mouse_genomes_project 2 156073299 156075119 - Blcap protein_coding processed_transcript MGP_AJ_T0058908.1 MGP_AJ_G0026749.1 mouse_genomes_project 2 156080699 156081440 - Blcap protein_coding processed_transcript MGP_AJ_T0058909.1 MGP_AJ_G0026749.1 mouse_genomes_project 2 156081983 156086169 - Blcap protein_coding processed_transcript MGP_AJ_T0013864.1 MGP_AJ_G0011959.1 mouse_genomes_project 2 163178009 163178265 - processed_pseudogene processed_pseudogene MGP_AJ_T0055602.1 MGP_AJ_G0025865.1 mouse_genomes_project 2 78103299 78124687 + MGP_AJ_P0055602 Nup35 protein_coding protein_coding MGP_AJ_T0001089.1 MGP_AJ_G0001018.1 mouse_genomes_project 2 67828250 67828971 - TEC TEC MGP_AJ_T0099805.1 MGP_AJ_G0037771.1 mouse_genomes_project 2 180363634 180363797 + Gm25184 snRNA snRNA MGP_AJ_T0056275.1 MGP_AJ_G0026132.1 mouse_genomes_project 2 90551438 90593489 + MGP_AJ_P0056275 Syt13 protein_coding protein_coding MGP_AJ_T0003991.1 MGP_AJ_G0003555.1 mouse_genomes_project 2 63463662 63468640 + Gm13618 antisense antisense MGP_AJ_T0004084.1 MGP_AJ_G0003617.1 mouse_genomes_project 2 127252777 127275319 + Gm14024 antisense antisense MGP_AJ_T0017839.1 MGP_AJ_G0015435.1 mouse_genomes_project 2 116020884 116046907 - Gm29232 processed_transcript processed_transcript MGP_AJ_T0053686.1 MGP_AJ_G0025524.1 mouse_genomes_project 2 26941475 26943667 + MGP_AJ_P0053686 Cercam protein_coding protein_coding MGP_AJ_T0053687.1 MGP_AJ_G0025524.1 mouse_genomes_project 2 26941805 26954961 + MGP_AJ_P0053687 Cercam protein_coding protein_coding MGP_AJ_T0053688.1 MGP_AJ_G0025524.1 mouse_genomes_project 2 26941855 26943621 + MGP_AJ_P0053688 Cercam protein_coding protein_coding MGP_AJ_T0053689.1 MGP_AJ_G0025524.1 mouse_genomes_project 2 26947942 26950372 + Cercam protein_coding retained_intron MGP_AJ_T0053690.1 MGP_AJ_G0025524.1 mouse_genomes_project 2 26948489 26952816 + Cercam protein_coding retained_intron MGP_AJ_T0007308.1 MGP_AJ_G0005989.1 mouse_genomes_project 2 113838579 113857464 + G630016G05Rik lincRNA lincRNA MGP_AJ_T0007309.1 MGP_AJ_G0005989.1 mouse_genomes_project 2 113839394 113857463 + G630016G05Rik lincRNA lincRNA MGP_AJ_T0055060.1 MGP_AJ_G0025756.1 mouse_genomes_project 2 62916490 62984272 + MGP_AJ_P0055060 Scn2a1 protein_coding protein_coding MGP_AJ_T0055061.1 MGP_AJ_G0025756.1 mouse_genomes_project 2 62916490 63056916 + MGP_AJ_P0055061 Scn2a1 protein_coding protein_coding MGP_AJ_T0055062.1 MGP_AJ_G0025756.1 mouse_genomes_project 2 62916530 62918961 + Scn2a1 protein_coding retained_intron MGP_AJ_T0055063.1 MGP_AJ_G0025756.1 mouse_genomes_project 2 62962958 62966060 + Scn2a1 protein_coding retained_intron MGP_AJ_T0055064.1 MGP_AJ_G0025756.1 mouse_genomes_project 2 62963034 63054553 + MGP_AJ_P0055064 Scn2a1 protein_coding protein_coding MGP_AJ_T0055065.1 MGP_AJ_G0025756.1 mouse_genomes_project 2 62964707 63056916 + MGP_AJ_P0055065 Scn2a1 protein_coding protein_coding MGP_AJ_T0055066.1 MGP_AJ_G0025756.1 mouse_genomes_project 2 62976369 62977956 + Scn2a1 protein_coding retained_intron MGP_AJ_T0055067.1 MGP_AJ_G0025756.1 mouse_genomes_project 2 63011515 63022403 + MGP_AJ_P0055067 Scn2a1 protein_coding nonsense_mediated_decay MGP_AJ_T0055068.1 MGP_AJ_G0025756.1 mouse_genomes_project 2 63011538 63022354 + MGP_AJ_P0055068 Scn2a1 protein_coding nonsense_mediated_decay MGP_AJ_T0013789.1 MGP_AJ_G0011884.1 mouse_genomes_project 2 141428522 141428672 + processed_pseudogene processed_pseudogene MGP_AJ_T0013759.1 MGP_AJ_G0011854.1 mouse_genomes_project 2 129034960 129035578 + processed_pseudogene processed_pseudogene MGP_AJ_T0058298.1 MGP_AJ_G0026614.1 mouse_genomes_project 2 150247311 150258133 - MGP_AJ_P0058298 Fam110a protein_coding protein_coding MGP_AJ_T0058299.1 MGP_AJ_G0026614.1 mouse_genomes_project 2 150247311 150251849 - MGP_AJ_P0058299 Fam110a protein_coding protein_coding MGP_AJ_T0058300.1 MGP_AJ_G0026614.1 mouse_genomes_project 2 150247311 150251880 - MGP_AJ_P0058300 Fam110a protein_coding protein_coding MGP_AJ_T0058301.1 MGP_AJ_G0026614.1 mouse_genomes_project 2 150247650 150251308 - MGP_AJ_P0058301 Fam110a protein_coding protein_coding MGP_AJ_T0053612.1 MGP_AJ_G0025511.1 mouse_genomes_project 2 25964952 25973682 - MGP_AJ_P0053612 Barhl1 protein_coding protein_coding MGP_AJ_T0053613.1 MGP_AJ_G0025511.1 mouse_genomes_project 2 25964957 25969769 - Barhl1 protein_coding processed_transcript MGP_AJ_T0053614.1 MGP_AJ_G0025511.1 mouse_genomes_project 2 25966242 25973701 - MGP_AJ_P0053614 Barhl1 protein_coding protein_coding MGP_AJ_T0053615.1 MGP_AJ_G0025511.1 mouse_genomes_project 2 25966242 25973928 - MGP_AJ_P0053615 Barhl1 protein_coding protein_coding MGP_AJ_T0053616.1 MGP_AJ_G0025511.1 mouse_genomes_project 2 25966913 25972775 - Barhl1 protein_coding processed_transcript MGP_AJ_T0010394.1 MGP_AJ_G0008516.1 mouse_genomes_project 2 28730614 28730678 + Mir6998 miRNA miRNA MGP_AJ_T0059754.1 MGP_AJ_G0026962.1 mouse_genomes_project 2 179424320 179428652 + MGP_AJ_P0059754 Mrgbp protein_coding protein_coding MGP_AJ_T0059755.1 MGP_AJ_G0026962.1 mouse_genomes_project 2 179425729 179429305 + MGP_AJ_P0059755 Mrgbp protein_coding protein_coding MGP_AJ_T0059756.1 MGP_AJ_G0026962.1 mouse_genomes_project 2 179425740 179429322 + Mrgbp protein_coding retained_intron MGP_AJ_T0059757.1 MGP_AJ_G0026962.1 mouse_genomes_project 2 179425743 179429322 + Mrgbp protein_coding retained_intron MGP_AJ_T0059758.1 MGP_AJ_G0026962.1 mouse_genomes_project 2 179425749 179429322 + Mrgbp protein_coding retained_intron MGP_AJ_T0059759.1 MGP_AJ_G0026962.1 mouse_genomes_project 2 179425775 179429322 + Mrgbp protein_coding retained_intron MGP_AJ_T0056746.1 MGP_AJ_G0026262.1 mouse_genomes_project 2 111789211 111797406 - MGP_AJ_P0056746 Actc1 protein_coding protein_coding MGP_AJ_T0058333.1 MGP_AJ_G0026626.1 mouse_genomes_project 2 150701659 150730001 + MGP_AJ_P0058333 6820408C15Rik protein_coding protein_coding MGP_AJ_T0058334.1 MGP_AJ_G0026626.1 mouse_genomes_project 2 150713611 150730000 + MGP_AJ_P0058334 6820408C15Rik protein_coding nonsense_mediated_decay MGP_AJ_T0058335.1 MGP_AJ_G0026626.1 mouse_genomes_project 2 150713638 150725298 + MGP_AJ_P0058335 6820408C15Rik protein_coding protein_coding MGP_AJ_T0007323.1 MGP_AJ_G0005999.1 mouse_genomes_project 2 118348578 118355374 + Gm26899 lincRNA lincRNA MGP_AJ_T0055836.1 MGP_AJ_G0025980.1 mouse_genomes_project 2 85016741 85019410 + Pramel6 protein_coding processed_transcript MGP_AJ_T0055837.1 MGP_AJ_G0025980.1 mouse_genomes_project 2 85016741 85019401 + Pramel6 protein_coding processed_transcript MGP_AJ_T0055838.1 MGP_AJ_G0025980.1 mouse_genomes_project 2 85016759 85019581 + Pramel6 protein_coding processed_transcript MGP_AJ_T0055839.1 MGP_AJ_G0025980.1 mouse_genomes_project 2 85017603 85019494 + Pramel6 protein_coding processed_transcript MGP_AJ_T0055840.1 MGP_AJ_G0025980.1 mouse_genomes_project 2 85017603 85021054 + MGP_AJ_P0055840 Pramel6 protein_coding protein_coding MGP_AJ_T0055841.1 MGP_AJ_G0025980.1 mouse_genomes_project 2 85018636 85021047 + MGP_AJ_P0055841 Pramel6 protein_coding protein_coding MGP_AJ_T0099742.1 MGP_AJ_G0037708.1 mouse_genomes_project 2 1353209 1353316 - Gm23691 snRNA snRNA MGP_AJ_T0004171.1 MGP_AJ_G0003682.1 mouse_genomes_project 2 166271590 166278336 + Gm14320 antisense antisense MGP_AJ_T0013442.1 MGP_AJ_G0011537.1 mouse_genomes_project 2 15225615 15226029 - processed_pseudogene processed_pseudogene MGP_AJ_T0004109.1 MGP_AJ_G0003633.1 mouse_genomes_project 2 140949340 140949948 + Kif16bos antisense antisense MGP_AJ_T0059820.1 MGP_AJ_G0026975.1 mouse_genomes_project 2 179872007 179893222 - MGP_AJ_P0059820 Chrna4 protein_coding protein_coding MGP_AJ_T0059821.1 MGP_AJ_G0026975.1 mouse_genomes_project 2 179872008 179881973 - MGP_AJ_P0059821 Chrna4 protein_coding protein_coding MGP_AJ_T0059822.1 MGP_AJ_G0026975.1 mouse_genomes_project 2 179875954 179893452 - MGP_AJ_P0059822 Chrna4 protein_coding protein_coding MGP_AJ_T0059823.1 MGP_AJ_G0026975.1 mouse_genomes_project 2 179883069 179893372 - Chrna4 protein_coding processed_transcript MGP_AJ_T0059824.1 MGP_AJ_G0026975.1 mouse_genomes_project 2 179887668 179897692 - MGP_AJ_P0059824 Chrna4 protein_coding protein_coding MGP_AJ_T0102465.1 MGP_AJ_G0040207.1 mouse_genomes_project 2 34217206 34218150 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0057861.1 MGP_AJ_G0026502.1 mouse_genomes_project 2 130089160 130181214 - MGP_AJ_P0057861 Slc23a2 protein_coding protein_coding MGP_AJ_T0057862.1 MGP_AJ_G0026502.1 mouse_genomes_project 2 130092078 130093350 - Slc23a2 protein_coding processed_transcript MGP_AJ_T0057863.1 MGP_AJ_G0026502.1 mouse_genomes_project 2 130097372 130103705 - Slc23a2 protein_coding processed_transcript MGP_AJ_T0057864.1 MGP_AJ_G0026502.1 mouse_genomes_project 2 130111485 130181214 - Slc23a2 protein_coding processed_transcript MGP_AJ_T0057865.1 MGP_AJ_G0026502.1 mouse_genomes_project 2 130112257 130114375 - Slc23a2 protein_coding processed_transcript MGP_AJ_T0057866.1 MGP_AJ_G0026502.1 mouse_genomes_project 2 130125475 130130996 - Slc23a2 protein_coding processed_transcript MGP_AJ_T0057867.1 MGP_AJ_G0026502.1 mouse_genomes_project 2 130130590 130147768 - MGP_AJ_P0057867 Slc23a2 protein_coding protein_coding MGP_AJ_T0058910.1 MGP_AJ_G0026751.1 mouse_genomes_project 2 156243937 156402608 + MGP_AJ_P0058910 Ctnnbl1 protein_coding protein_coding MGP_AJ_T0058911.1 MGP_AJ_G0026751.1 mouse_genomes_project 2 156298208 156316541 + Ctnnbl1 protein_coding processed_transcript MGP_AJ_T0058912.1 MGP_AJ_G0026751.1 mouse_genomes_project 2 156299624 156328117 + Ctnnbl1 protein_coding processed_transcript MGP_AJ_T0058913.1 MGP_AJ_G0026751.1 mouse_genomes_project 2 156299657 156346071 + Ctnnbl1 protein_coding processed_transcript MGP_AJ_T0099793.1 MGP_AJ_G0037759.1 mouse_genomes_project 2 138537872 138537979 - Gm23846 snRNA snRNA MGP_AJ_T0007368.1 MGP_AJ_G0006037.1 mouse_genomes_project 2 153129412 153130712 - Gm14216 lincRNA lincRNA MGP_AJ_T0007369.1 MGP_AJ_G0006037.1 mouse_genomes_project 2 153129430 153147913 - Gm14216 lincRNA lincRNA MGP_AJ_T0001076.1 MGP_AJ_G0001007.1 mouse_genomes_project 2 36432846 36436326 - TEC TEC MGP_AJ_T0053510.1 MGP_AJ_G0025490.1 mouse_genomes_project 2 24288567 24458819 - MGP_AJ_P0053510 Vav2 protein_coding unknown_likely_coding MGP_AJ_T0053511.1 MGP_AJ_G0025490.1 mouse_genomes_project 2 24288571 24459373 - MGP_AJ_P0053511 Vav2 protein_coding protein_coding MGP_AJ_T0053512.1 MGP_AJ_G0025490.1 mouse_genomes_project 2 24288571 24459252 - MGP_AJ_P0053512 Vav2 protein_coding nonsense_mediated_decay MGP_AJ_T0053513.1 MGP_AJ_G0025490.1 mouse_genomes_project 2 24294922 24303487 - Vav2 protein_coding processed_transcript MGP_AJ_T0053514.1 MGP_AJ_G0025490.1 mouse_genomes_project 2 24295386 24305025 - Vav2 protein_coding processed_transcript MGP_AJ_T0053515.1 MGP_AJ_G0025490.1 mouse_genomes_project 2 24296048 24298266 - Vav2 protein_coding processed_transcript MGP_AJ_T0053516.1 MGP_AJ_G0025490.1 mouse_genomes_project 2 24296048 24298343 - Vav2 protein_coding processed_transcript MGP_AJ_T0053517.1 MGP_AJ_G0025490.1 mouse_genomes_project 2 24328091 24371292 - Vav2 protein_coding processed_transcript MGP_AJ_T0102489.1 MGP_AJ_G0040231.1 mouse_genomes_project 2 84766952 84767873 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0058957.1 MGP_AJ_G0026761.1 mouse_genomes_project 2 157016644 157022223 + MGP_AJ_P0058957 Adig protein_coding protein_coding MGP_AJ_T0058958.1 MGP_AJ_G0026761.1 mouse_genomes_project 2 157016685 157022223 + MGP_AJ_P0058958 Adig protein_coding protein_coding MGP_AJ_T0058959.1 MGP_AJ_G0026761.1 mouse_genomes_project 2 157016771 157019934 + Adig protein_coding processed_transcript MGP_AJ_T0059428.1 MGP_AJ_G0026878.1 mouse_genomes_project 2 165902309 165954028 - MGP_AJ_P0059428 B4galt5 protein_coding protein_coding MGP_AJ_T0059429.1 MGP_AJ_G0026878.1 mouse_genomes_project 2 165905065 165909574 - MGP_AJ_P0059429 B4galt5 protein_coding protein_coding MGP_AJ_T0059430.1 MGP_AJ_G0026878.1 mouse_genomes_project 2 165911485 165917731 - B4galt5 protein_coding processed_transcript MGP_AJ_T0059431.1 MGP_AJ_G0026878.1 mouse_genomes_project 2 165911485 165917776 - B4galt5 protein_coding processed_transcript MGP_AJ_T0001068.1 MGP_AJ_G0000999.1 mouse_genomes_project 2 35242078 35246028 - TEC TEC MGP_AJ_T0011526.1 MGP_AJ_G0009648.1 mouse_genomes_project 2 173029854 173029976 + Gm27869 misc_RNA misc_RNA MGP_AJ_T0007134.1 MGP_AJ_G0005850.1 mouse_genomes_project 2 3464106 3470726 + Gm13391 lincRNA lincRNA MGP_AJ_T0007135.1 MGP_AJ_G0005850.1 mouse_genomes_project 2 3464377 3465218 + Gm13391 lincRNA lincRNA MGP_AJ_T0055964.1 MGP_AJ_G0026078.1 mouse_genomes_project 2 87591289 87594497 + MGP_AJ_P0055964 Olfr1262 protein_coding protein_coding MGP_AJ_T0055965.1 MGP_AJ_G0026078.1 mouse_genomes_project 2 87591314 87594270 + MGP_AJ_P0055965 Olfr1262 protein_coding protein_coding MGP_AJ_T0055966.1 MGP_AJ_G0026078.1 mouse_genomes_project 2 87593436 87594497 + MGP_AJ_P0055966 Olfr1262 protein_coding protein_coding MGP_AJ_T0013539.1 MGP_AJ_G0011634.1 mouse_genomes_project 2 49269303 49269840 - processed_pseudogene processed_pseudogene MGP_AJ_T0059039.1 MGP_AJ_G0026779.1 mouse_genomes_project 2 161465418 161469096 + Srsf6 protein_coding retained_intron MGP_AJ_T0059040.1 MGP_AJ_G0026779.1 mouse_genomes_project 2 161465418 161471012 + MGP_AJ_P0059040 Srsf6 protein_coding protein_coding MGP_AJ_T0059041.1 MGP_AJ_G0026779.1 mouse_genomes_project 2 161465452 161468914 + MGP_AJ_P0059041 Srsf6 protein_coding nonsense_mediated_decay MGP_AJ_T0059042.1 MGP_AJ_G0026779.1 mouse_genomes_project 2 161465551 161467396 + MGP_AJ_P0059042 Srsf6 protein_coding protein_coding MGP_AJ_T0052736.1 MGP_AJ_G0025351.1 mouse_genomes_project 2 15094958 15271850 + MGP_AJ_P0052736 Mllt10 protein_coding protein_coding MGP_AJ_T0052737.1 MGP_AJ_G0025351.1 mouse_genomes_project 2 15104115 15164382 + Mllt10 protein_coding processed_transcript MGP_AJ_T0052738.1 MGP_AJ_G0025351.1 mouse_genomes_project 2 15104405 15168263 + Mllt10 protein_coding processed_transcript MGP_AJ_T0052739.1 MGP_AJ_G0025351.1 mouse_genomes_project 2 15104408 15264690 + MGP_AJ_P0052739 Mllt10 protein_coding protein_coding MGP_AJ_T0052740.1 MGP_AJ_G0025351.1 mouse_genomes_project 2 15104526 15165846 + Mllt10 protein_coding processed_transcript MGP_AJ_T0052741.1 MGP_AJ_G0025351.1 mouse_genomes_project 2 15104555 15151760 + Mllt10 protein_coding processed_transcript MGP_AJ_T0052742.1 MGP_AJ_G0025351.1 mouse_genomes_project 2 15104562 15104977 + Mllt10 protein_coding processed_transcript MGP_AJ_T0052743.1 MGP_AJ_G0025351.1 mouse_genomes_project 2 15134309 15264532 + MGP_AJ_P0052743 Mllt10 protein_coding protein_coding MGP_AJ_T0052744.1 MGP_AJ_G0025351.1 mouse_genomes_project 2 15165742 15205634 + Mllt10 protein_coding processed_transcript MGP_AJ_T0052745.1 MGP_AJ_G0025351.1 mouse_genomes_project 2 15216292 15233453 + Mllt10 protein_coding processed_transcript MGP_AJ_T0053260.1 MGP_AJ_G0025446.1 mouse_genomes_project 2 22780682 22783214 + MGP_AJ_P0053260 Lcn3 protein_coding protein_coding MGP_AJ_T0013798.1 MGP_AJ_G0011893.1 mouse_genomes_project 2 143023243 143024064 - processed_pseudogene processed_pseudogene MGP_AJ_T0007127.1 MGP_AJ_G0005844.1 mouse_genomes_project 2 816931 837307 + Gm13180 lincRNA lincRNA MGP_AJ_T0057568.1 MGP_AJ_G0026434.1 mouse_genomes_project 2 125822150 125862425 + Acoxl protein_coding processed_transcript MGP_AJ_T0057569.1 MGP_AJ_G0026434.1 mouse_genomes_project 2 125838682 126123210 + MGP_AJ_P0057569 Acoxl protein_coding protein_coding MGP_AJ_T0057570.1 MGP_AJ_G0026434.1 mouse_genomes_project 2 125893760 126122885 + MGP_AJ_P0057570 Acoxl protein_coding protein_coding MGP_AJ_T0004007.1 MGP_AJ_G0003566.1 mouse_genomes_project 2 69586116 69589819 - Rapgef4os3 antisense antisense MGP_AJ_T0056992.1 MGP_AJ_G0026317.1 mouse_genomes_project 2 117846077 117850946 + MGP_AJ_P0056992 Jmjd7 protein_coding protein_coding MGP_AJ_T0056994.1 MGP_AJ_G0026317.1 mouse_genomes_project 2 117846098 117848890 + MGP_AJ_P0056994 Jmjd7 protein_coding nonsense_mediated_decay MGP_AJ_T0056997.1 MGP_AJ_G0026317.1 mouse_genomes_project 2 117846110 117850228 + Jmjd7 protein_coding processed_transcript MGP_AJ_T0056998.1 MGP_AJ_G0026317.1 mouse_genomes_project 2 117846151 117849745 + Jmjd7 protein_coding processed_transcript MGP_AJ_T0056999.1 MGP_AJ_G0026317.1 mouse_genomes_project 2 117846188 117848737 + MGP_AJ_P0056999 Jmjd7 protein_coding nonsense_mediated_decay MGP_AJ_T0059136.1 MGP_AJ_G0026808.1 mouse_genomes_project 2 162758791 162761329 - MGP_AJ_P0059136 Svs2 protein_coding protein_coding MGP_AJ_T0059137.1 MGP_AJ_G0026808.1 mouse_genomes_project 2 162759390 162761127 - MGP_AJ_P0059137 Svs2 protein_coding protein_coding MGP_AJ_T0058012.1 MGP_AJ_G0026536.1 mouse_genomes_project 2 138739877 138760403 - Flrt3 protein_coding processed_transcript MGP_AJ_T0058013.1 MGP_AJ_G0026536.1 mouse_genomes_project 2 138747161 138760422 - MGP_AJ_P0058013 Flrt3 protein_coding protein_coding MGP_AJ_T0058014.1 MGP_AJ_G0026536.1 mouse_genomes_project 2 138748279 138760353 - MGP_AJ_P0058014 Flrt3 protein_coding protein_coding MGP_AJ_T0098944.1 MGP_AJ_G0036922.1 mouse_genomes_project 2 1286732 1289140 + Gm36988 sense_intronic sense_intronic MGP_AJ_T0058826.1 MGP_AJ_G0026736.1 mouse_genomes_project 2 155355333 155365804 + MGP_AJ_P0058826 1110008F13Rik protein_coding protein_coding MGP_AJ_T0058827.1 MGP_AJ_G0026736.1 mouse_genomes_project 2 155355344 155365639 + 1110008F13Rik protein_coding processed_transcript MGP_AJ_T0058828.1 MGP_AJ_G0026736.1 mouse_genomes_project 2 155355350 155359193 + 1110008F13Rik protein_coding retained_intron MGP_AJ_T0058830.1 MGP_AJ_G0026736.1 mouse_genomes_project 2 155364782 155365637 + 1110008F13Rik protein_coding processed_transcript MGP_AJ_T0057784.1 MGP_AJ_G0026485.1 mouse_genomes_project 2 129172220 129192824 + MGP_AJ_P0057784 Hspa12b protein_coding protein_coding MGP_AJ_T0057785.1 MGP_AJ_G0026485.1 mouse_genomes_project 2 129172382 129183008 + MGP_AJ_P0057785 Hspa12b protein_coding protein_coding MGP_AJ_T0057786.1 MGP_AJ_G0026485.1 mouse_genomes_project 2 129172434 129191730 + MGP_AJ_P0057786 Hspa12b protein_coding nonsense_mediated_decay MGP_AJ_T0013592.1 MGP_AJ_G0011687.1 mouse_genomes_project 2 69094789 69095319 - processed_pseudogene processed_pseudogene MGP_AJ_T0007361.1 MGP_AJ_G0006031.1 mouse_genomes_project 2 147901270 147957409 - Gm14133 lincRNA lincRNA MGP_AJ_T0007362.1 MGP_AJ_G0006031.1 mouse_genomes_project 2 147913459 147957451 - Gm14133 lincRNA lincRNA MGP_AJ_T0004093.1 MGP_AJ_G0003624.1 mouse_genomes_project 2 130299173 130307213 + AV099323 antisense antisense MGP_AJ_T0102513.1 MGP_AJ_G0040255.1 mouse_genomes_project 2 119304050 119313557 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0055832.1 MGP_AJ_G0025979.1 mouse_genomes_project 2 84998324 85001664 - MGP_AJ_P0055832 Pramel7 protein_coding protein_coding MGP_AJ_T0055833.1 MGP_AJ_G0025979.1 mouse_genomes_project 2 85000129 85007022 - Pramel7 protein_coding processed_transcript MGP_AJ_T0055834.1 MGP_AJ_G0025979.1 mouse_genomes_project 2 85000223 85007261 - Pramel7 protein_coding processed_transcript MGP_AJ_T0055835.1 MGP_AJ_G0025979.1 mouse_genomes_project 2 85000365 85007031 - Pramel7 protein_coding processed_transcript MGP_AJ_T0059643.1 MGP_AJ_G0026932.1 mouse_genomes_project 2 173065159 173082714 - MGP_AJ_P0059643 Gm20721 protein_coding protein_coding MGP_AJ_T0056939.1 MGP_AJ_G0026309.1 mouse_genomes_project 2 117460125 117468210 - MGP_AJ_P0056939 Ndufaf1 protein_coding protein_coding MGP_AJ_T0056940.1 MGP_AJ_G0026309.1 mouse_genomes_project 2 117465775 117468189 - Ndufaf1 protein_coding processed_transcript MGP_AJ_T0056941.1 MGP_AJ_G0026309.1 mouse_genomes_project 2 117465955 117468204 - Ndufaf1 protein_coding processed_transcript MGP_AJ_T0001074.1 MGP_AJ_G0001005.1 mouse_genomes_project 2 36083129 36085088 - TEC TEC MGP_AJ_T0055099.1 MGP_AJ_G0025762.1 mouse_genomes_project 2 63941237 64045626 - MGP_AJ_P0055099 protein_coding protein_coding MGP_AJ_T0056067.1 MGP_AJ_G0026103.1 mouse_genomes_project 2 88728702 88747278 + MGP_AJ_P0056067 Mybpc3 protein_coding unknown_likely_coding MGP_AJ_T0056068.1 MGP_AJ_G0026103.1 mouse_genomes_project 2 88728896 88747277 + MGP_AJ_P0056068 Mybpc3 protein_coding protein_coding MGP_AJ_T0056069.1 MGP_AJ_G0026103.1 mouse_genomes_project 2 88728896 88747271 + MGP_AJ_P0056069 Mybpc3 protein_coding protein_coding MGP_AJ_T0056070.1 MGP_AJ_G0026103.1 mouse_genomes_project 2 88728896 88747271 + MGP_AJ_P0056070 Mybpc3 protein_coding protein_coding MGP_AJ_T0004017.1 MGP_AJ_G0003572.1 mouse_genomes_project 2 70981216 71000481 + Chn1os3 antisense antisense MGP_AJ_T0004018.1 MGP_AJ_G0003572.1 mouse_genomes_project 2 70981514 70983892 + Chn1os3 antisense antisense MGP_AJ_T0013455.1 MGP_AJ_G0011550.1 mouse_genomes_project 2 18286145 18286481 + processed_pseudogene processed_pseudogene MGP_AJ_T0007161.1 MGP_AJ_G0005871.1 mouse_genomes_project 2 22085714 22109937 - Gm13387 lincRNA lincRNA MGP_AJ_T0007162.1 MGP_AJ_G0005871.1 mouse_genomes_project 2 22105831 22109937 - Gm13387 lincRNA lincRNA MGP_AJ_T0007163.1 MGP_AJ_G0005871.1 mouse_genomes_project 2 22108358 22109864 - Gm13387 lincRNA lincRNA MGP_AJ_T0059088.1 MGP_AJ_G0026792.1 mouse_genomes_project 2 162144643 162161650 + MGP_AJ_P0059088 Ttpal protein_coding protein_coding MGP_AJ_T0059089.1 MGP_AJ_G0026792.1 mouse_genomes_project 2 162144651 162159138 + MGP_AJ_P0059089 Ttpal protein_coding protein_coding MGP_AJ_T0059090.1 MGP_AJ_G0026792.1 mouse_genomes_project 2 162144678 162155491 + Ttpal protein_coding retained_intron MGP_AJ_T0059091.1 MGP_AJ_G0026792.1 mouse_genomes_project 2 162144678 162150083 + MGP_AJ_P0059091 Ttpal protein_coding protein_coding MGP_AJ_T0059092.1 MGP_AJ_G0026792.1 mouse_genomes_project 2 162144680 162161651 + MGP_AJ_P0059092 Ttpal protein_coding nonsense_mediated_decay MGP_AJ_T0059093.1 MGP_AJ_G0026792.1 mouse_genomes_project 2 162144892 162154535 + MGP_AJ_P0059093 Ttpal protein_coding protein_coding MGP_AJ_T0059094.1 MGP_AJ_G0026792.1 mouse_genomes_project 2 162154157 162158064 + Ttpal protein_coding retained_intron MGP_AJ_T0007382.1 MGP_AJ_G0006048.1 mouse_genomes_project 2 159454320 159455428 - Gm14228 lincRNA lincRNA MGP_AJ_T0007364.1 MGP_AJ_G0006033.1 mouse_genomes_project 2 148948125 148950607 - Gm26681 lincRNA lincRNA MGP_AJ_T0101083.1 MGP_AJ_G0039049.1 mouse_genomes_project 2 149525430 149525566 - snoRNA snoRNA MGP_AJ_T0098647.1 MGP_AJ_G0036631.1 mouse_genomes_project 2 26528168 26528303 + Gm24976 rRNA rRNA MGP_AJ_T0057824.1 MGP_AJ_G0026494.1 mouse_genomes_project 2 129345225 129400531 - MGP_AJ_P0057824 Rnf24 protein_coding protein_coding MGP_AJ_T0057825.1 MGP_AJ_G0026494.1 mouse_genomes_project 2 129345226 129360969 - MGP_AJ_P0057825 Rnf24 protein_coding protein_coding MGP_AJ_T0057826.1 MGP_AJ_G0026494.1 mouse_genomes_project 2 129345228 129376630 - MGP_AJ_P0057826 Rnf24 protein_coding protein_coding MGP_AJ_T0057827.1 MGP_AJ_G0026494.1 mouse_genomes_project 2 129349807 129400512 - MGP_AJ_P0057827 Rnf24 protein_coding nonsense_mediated_decay MGP_AJ_T0057828.1 MGP_AJ_G0026494.1 mouse_genomes_project 2 129360211 129400542 - Rnf24 protein_coding retained_intron MGP_AJ_T0054495.1 MGP_AJ_G0025641.1 mouse_genomes_project 2 33571116 33572037 + MGP_AJ_P0054495 Olfr338 protein_coding protein_coding MGP_AJ_T0055611.1 MGP_AJ_G0025868.1 mouse_genomes_project 2 81062637 81082551 + MGP_AJ_P0055611 Zc3h15 protein_coding protein_coding MGP_AJ_T0055612.1 MGP_AJ_G0025868.1 mouse_genomes_project 2 81062683 81076445 + Zc3h15 protein_coding processed_transcript MGP_AJ_T0055613.1 MGP_AJ_G0025868.1 mouse_genomes_project 2 81062739 81071758 + Zc3h15 protein_coding processed_transcript MGP_AJ_T0055614.1 MGP_AJ_G0025868.1 mouse_genomes_project 2 81062739 81081841 + MGP_AJ_P0055614 Zc3h15 protein_coding unknown_likely_coding MGP_AJ_T0055615.1 MGP_AJ_G0025868.1 mouse_genomes_project 2 81062825 81078317 + Zc3h15 protein_coding processed_transcript MGP_AJ_T0055616.1 MGP_AJ_G0025868.1 mouse_genomes_project 2 81074760 81076208 + Zc3h15 protein_coding processed_transcript MGP_AJ_T0055617.1 MGP_AJ_G0025868.1 mouse_genomes_project 2 81075253 81079668 + Zc3h15 protein_coding processed_transcript MGP_AJ_T0055618.1 MGP_AJ_G0025868.1 mouse_genomes_project 2 81078143 81082551 + Zc3h15 protein_coding processed_transcript MGP_AJ_T0010356.1 MGP_AJ_G0008478.1 mouse_genomes_project 2 7533637 7533734 + Gm23542 miRNA miRNA MGP_AJ_T0055020.1 MGP_AJ_G0025750.1 mouse_genomes_project 2 60002787 60499375 - MGP_AJ_P0055020 Kcnh7 protein_coding protein_coding MGP_AJ_T0055021.1 MGP_AJ_G0025750.1 mouse_genomes_project 2 60098776 60499384 - MGP_AJ_P0055021 Kcnh7 protein_coding protein_coding MGP_AJ_T0055022.1 MGP_AJ_G0025750.1 mouse_genomes_project 2 60098862 60499267 - MGP_AJ_P0055022 Kcnh7 protein_coding protein_coding MGP_AJ_T0055023.1 MGP_AJ_G0025750.1 mouse_genomes_project 2 60496567 60499359 - Kcnh7 protein_coding processed_transcript MGP_AJ_T0007418.1 MGP_AJ_G0006079.1 mouse_genomes_project 2 167891728 167894481 + 9430093N23Rik lincRNA lincRNA MGP_AJ_T0055938.1 MGP_AJ_G0026063.1 mouse_genomes_project 2 87201701 87202625 - MGP_AJ_P0055938 Olfr1245 protein_coding protein_coding MGP_AJ_T0057883.1 MGP_AJ_G0026506.1 mouse_genomes_project 2 130385528 130433205 - MGP_AJ_P0057883 Prokr2 protein_coding protein_coding MGP_AJ_T0057884.1 MGP_AJ_G0026506.1 mouse_genomes_project 2 130418106 130433203 - MGP_AJ_P0057884 Prokr2 protein_coding protein_coding MGP_AJ_T0057885.1 MGP_AJ_G0026506.1 mouse_genomes_project 2 130418106 130433178 - MGP_AJ_P0057885 Prokr2 protein_coding protein_coding MGP_AJ_T0057886.1 MGP_AJ_G0026506.1 mouse_genomes_project 2 130418942 130433225 - MGP_AJ_P0057886 Prokr2 protein_coding protein_coding MGP_AJ_T0057887.1 MGP_AJ_G0026506.1 mouse_genomes_project 2 130429345 130433199 - MGP_AJ_P0057887 Prokr2 protein_coding protein_coding MGP_AJ_T0055969.1 MGP_AJ_G0026081.1 mouse_genomes_project 2 87629326 87630318 + MGP_AJ_P0055969 protein_coding protein_coding MGP_AJ_T0102486.1 MGP_AJ_G0040228.1 mouse_genomes_project 2 83984821 83985766 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0013641.1 MGP_AJ_G0011736.1 mouse_genomes_project 2 84625958 84627129 - processed_pseudogene processed_pseudogene MGP_AJ_T0004020.1 MGP_AJ_G0003574.1 mouse_genomes_project 2 71959653 71965112 + 4930445N08Rik antisense antisense MGP_AJ_T0053030.1 MGP_AJ_G0025399.1 mouse_genomes_project 2 22157809 22161730 - MGP_AJ_P0053030 Tor4a protein_coding protein_coding MGP_AJ_T0053031.1 MGP_AJ_G0025399.1 mouse_genomes_project 2 22159900 22161603 - MGP_AJ_P0053031 Tor4a protein_coding protein_coding MGP_AJ_T0053032.1 MGP_AJ_G0025399.1 mouse_genomes_project 2 22160635 22161615 - MGP_AJ_P0053032 Tor4a protein_coding protein_coding MGP_AJ_T0001039.1 MGP_AJ_G0000970.1 mouse_genomes_project 2 10203592 10205852 - TEC TEC MGP_AJ_T0055013.1 MGP_AJ_G0025748.1 mouse_genomes_project 2 59905418 59955806 - MGP_AJ_P0055013 Ifih1 protein_coding protein_coding MGP_AJ_T0055014.1 MGP_AJ_G0025748.1 mouse_genomes_project 2 59907069 59955748 - MGP_AJ_P0055014 Ifih1 protein_coding protein_coding MGP_AJ_T0055015.1 MGP_AJ_G0025748.1 mouse_genomes_project 2 59917863 59955850 - Ifih1 protein_coding retained_intron MGP_AJ_T0055016.1 MGP_AJ_G0025748.1 mouse_genomes_project 2 59939143 59949055 - Ifih1 protein_coding processed_transcript MGP_AJ_T0055017.1 MGP_AJ_G0025748.1 mouse_genomes_project 2 59943189 59955753 - Ifih1 protein_coding retained_intron MGP_AJ_T0059095.1 MGP_AJ_G0026793.1 mouse_genomes_project 2 162165905 162187524 - MGP_AJ_P0059095 Serinc3 protein_coding protein_coding MGP_AJ_T0059096.1 MGP_AJ_G0026793.1 mouse_genomes_project 2 162179224 162187518 - Serinc3 protein_coding processed_transcript MGP_AJ_T0059157.1 MGP_AJ_G0026818.1 mouse_genomes_project 2 162984767 162988339 + Sys1 protein_coding processed_transcript MGP_AJ_T0059158.1 MGP_AJ_G0026818.1 mouse_genomes_project 2 162984779 162992873 + MGP_AJ_P0059158 Sys1 protein_coding protein_coding MGP_AJ_T0059159.1 MGP_AJ_G0026818.1 mouse_genomes_project 2 162984891 162988711 + Sys1 protein_coding processed_transcript MGP_AJ_T0059161.1 MGP_AJ_G0026818.1 mouse_genomes_project 2 162988373 162992869 + MGP_AJ_P0059161 Sys1 protein_coding protein_coding MGP_AJ_T0059162.1 MGP_AJ_G0026818.1 mouse_genomes_project 2 162988402 163001807 + MGP_AJ_P0059162 Sys1 protein_coding nonsense_mediated_decay MGP_AJ_T0059163.1 MGP_AJ_G0026818.1 mouse_genomes_project 2 162988455 163008540 + MGP_AJ_P0059163 Sys1 protein_coding nonsense_mediated_decay MGP_AJ_T0059164.1 MGP_AJ_G0026818.1 mouse_genomes_project 2 162988711 163001807 + MGP_AJ_P0059164 Sys1 protein_coding nonsense_mediated_decay MGP_AJ_T0059172.1 MGP_AJ_G0026822.1 mouse_genomes_project 2 163027081 163037618 + MGP_AJ_P0059172 Pigt protein_coding protein_coding MGP_AJ_T0059173.1 MGP_AJ_G0026822.1 mouse_genomes_project 2 163027096 163032628 + MGP_AJ_P0059173 Pigt protein_coding protein_coding MGP_AJ_T0059174.1 MGP_AJ_G0026822.1 mouse_genomes_project 2 163027107 163032904 + Pigt protein_coding retained_intron MGP_AJ_T0059175.1 MGP_AJ_G0026822.1 mouse_genomes_project 2 163027122 163037618 + MGP_AJ_P0059175 Pigt protein_coding nonsense_mediated_decay MGP_AJ_T0059176.1 MGP_AJ_G0026822.1 mouse_genomes_project 2 163029476 163031166 + Pigt protein_coding retained_intron MGP_AJ_T0013837.1 MGP_AJ_G0011932.1 mouse_genomes_project 2 154526983 154527529 + processed_pseudogene processed_pseudogene MGP_AJ_T0059526.1 MGP_AJ_G0026899.1 mouse_genomes_project 2 168288690 168572798 + MGP_AJ_P0059526 Tshz2 protein_coding protein_coding MGP_AJ_T0059527.1 MGP_AJ_G0026899.1 mouse_genomes_project 2 168289347 168547149 + MGP_AJ_P0059527 Tshz2 protein_coding protein_coding MGP_AJ_T0059528.1 MGP_AJ_G0026899.1 mouse_genomes_project 2 168543537 168733979 + MGP_AJ_P0059528 Tshz2 protein_coding protein_coding MGP_AJ_T0059529.1 MGP_AJ_G0026899.1 mouse_genomes_project 2 168543537 168733979 + MGP_AJ_P0059529 Tshz2 protein_coding protein_coding MGP_AJ_T0059530.1 MGP_AJ_G0026899.1 mouse_genomes_project 2 168544479 168572798 + MGP_AJ_P0059530 Tshz2 protein_coding protein_coding MGP_AJ_T0004146.1 MGP_AJ_G0003665.1 mouse_genomes_project 2 159274337 159282320 - Gm27206 antisense antisense MGP_AJ_T0056911.1 MGP_AJ_G0026299.1 mouse_genomes_project 2 117013669 117025905 + MGP_AJ_P0056911 Spint1 protein_coding protein_coding MGP_AJ_T0056912.1 MGP_AJ_G0026299.1 mouse_genomes_project 2 117013784 117025586 + MGP_AJ_P0056912 Spint1 protein_coding protein_coding MGP_AJ_T0056913.1 MGP_AJ_G0026299.1 mouse_genomes_project 2 117013860 117025918 + MGP_AJ_P0056913 Spint1 protein_coding protein_coding MGP_AJ_T0056914.1 MGP_AJ_G0026299.1 mouse_genomes_project 2 117022758 117025293 + Spint1 protein_coding retained_intron MGP_AJ_T0056915.1 MGP_AJ_G0026299.1 mouse_genomes_project 2 117024595 117025440 + Spint1 protein_coding retained_intron MGP_AJ_T0053597.1 MGP_AJ_G0025507.1 mouse_genomes_project 2 25745567 25753318 - MGP_AJ_P0053597 Spaca9 protein_coding protein_coding MGP_AJ_T0053598.1 MGP_AJ_G0025507.1 mouse_genomes_project 2 25745571 25753350 - MGP_AJ_P0053598 Spaca9 protein_coding protein_coding MGP_AJ_T0053599.1 MGP_AJ_G0025507.1 mouse_genomes_project 2 25746499 25753394 - Spaca9 protein_coding processed_transcript MGP_AJ_T0053600.1 MGP_AJ_G0025507.1 mouse_genomes_project 2 25747193 25753341 - Spaca9 protein_coding processed_transcript MGP_AJ_T0013879.1 MGP_AJ_G0011974.1 mouse_genomes_project 2 172716065 172716275 - processed_pseudogene processed_pseudogene MGP_AJ_T0013650.1 MGP_AJ_G0011745.1 mouse_genomes_project 2 85027054 85027464 - processed_pseudogene processed_pseudogene MGP_AJ_T0013685.1 MGP_AJ_G0011780.1 mouse_genomes_project 2 99796426 99796846 + processed_pseudogene processed_pseudogene MGP_AJ_T0056681.1 MGP_AJ_G0026229.1 mouse_genomes_project 2 109372860 109373799 - MGP_AJ_P0056681 Olfr1297 protein_coding protein_coding MGP_AJ_T0004119.1 MGP_AJ_G0003640.1 mouse_genomes_project 2 144338673 144346554 + A930019D19Rik antisense antisense MGP_AJ_T0102512.1 MGP_AJ_G0040254.1 mouse_genomes_project 2 117060065 117060306 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0001077.1 MGP_AJ_G0001008.1 mouse_genomes_project 2 36664597 36669234 - TEC TEC MGP_AJ_T0001078.1 MGP_AJ_G0001008.1 mouse_genomes_project 2 36668163 36669224 - TEC TEC MGP_AJ_T0010469.1 MGP_AJ_G0008591.1 mouse_genomes_project 2 154884916 154885012 - Gm22758 miRNA miRNA MGP_AJ_T0001082.1 MGP_AJ_G0001011.1 mouse_genomes_project 2 65170762 65175686 + TEC TEC MGP_AJ_T0013520.1 MGP_AJ_G0011615.1 mouse_genomes_project 2 42941976 42942389 + processed_pseudogene processed_pseudogene MGP_AJ_T0054291.1 MGP_AJ_G0025608.1 mouse_genomes_project 2 30294204 30534875 - MGP_AJ_P0054291 Ralgps1 protein_coding protein_coding MGP_AJ_T0054292.1 MGP_AJ_G0025608.1 mouse_genomes_project 2 30294208 30534927 - MGP_AJ_P0054292 Ralgps1 protein_coding protein_coding MGP_AJ_T0054293.1 MGP_AJ_G0025608.1 mouse_genomes_project 2 30294208 30534932 - MGP_AJ_P0054293 Ralgps1 protein_coding protein_coding MGP_AJ_T0054294.1 MGP_AJ_G0025608.1 mouse_genomes_project 2 30297754 30534924 - MGP_AJ_P0054294 Ralgps1 protein_coding protein_coding MGP_AJ_T0054295.1 MGP_AJ_G0025608.1 mouse_genomes_project 2 30304088 30318924 - Ralgps1 protein_coding processed_transcript MGP_AJ_T0054300.1 MGP_AJ_G0025608.1 mouse_genomes_project 2 30420429 30534916 - Ralgps1 protein_coding retained_intron MGP_AJ_T0004044.1 MGP_AJ_G0003590.1 mouse_genomes_project 2 101905132 101909003 + Gm13883 antisense antisense MGP_AJ_T0004045.1 MGP_AJ_G0003590.1 mouse_genomes_project 2 101905132 101924782 + Gm13883 antisense antisense MGP_AJ_T0007378.1 MGP_AJ_G0006044.1 mouse_genomes_project 2 156105542 156107280 - Platr27 lincRNA lincRNA MGP_AJ_T0059197.1 MGP_AJ_G0026835.1 mouse_genomes_project 2 163252657 163255357 + MGP_AJ_P0059197 Spint5 protein_coding protein_coding MGP_AJ_T0059198.1 MGP_AJ_G0026835.1 mouse_genomes_project 2 163252657 163255357 + MGP_AJ_P0059198 Spint5 protein_coding protein_coding MGP_AJ_T0010413.1 MGP_AJ_G0008535.1 mouse_genomes_project 2 54115032 54115129 + Mir195b miRNA miRNA MGP_AJ_T0013752.1 MGP_AJ_G0011847.1 mouse_genomes_project 2 126959818 126960297 - processed_pseudogene processed_pseudogene MGP_AJ_T0007218.1 MGP_AJ_G0005915.1 mouse_genomes_project 2 59743236 59747500 - Gm13565 lincRNA lincRNA MGP_AJ_T0059177.1 MGP_AJ_G0026823.1 mouse_genomes_project 2 163094461 163095598 + Wfdc2 protein_coding processed_transcript MGP_AJ_T0059178.1 MGP_AJ_G0026823.1 mouse_genomes_project 2 163094627 163100556 + MGP_AJ_P0059178 Wfdc2 protein_coding protein_coding MGP_AJ_T0059179.1 MGP_AJ_G0026823.1 mouse_genomes_project 2 163094747 163100556 + MGP_AJ_P0059179 Wfdc2 protein_coding protein_coding MGP_AJ_T0059180.1 MGP_AJ_G0026823.1 mouse_genomes_project 2 163094762 163100556 + MGP_AJ_P0059180 Wfdc2 protein_coding protein_coding MGP_AJ_T0059181.1 MGP_AJ_G0026823.1 mouse_genomes_project 2 163095067 163096231 + MGP_AJ_P0059181 Wfdc2 protein_coding protein_coding MGP_AJ_T0013833.1 MGP_AJ_G0011928.1 mouse_genomes_project 2 153914017 153914332 - processed_pseudogene processed_pseudogene MGP_AJ_T0001045.1 MGP_AJ_G0000976.1 mouse_genomes_project 2 11267689 11267830 - TEC TEC MGP_AJ_T0056874.1 MGP_AJ_G0026291.1 mouse_genomes_project 2 116819634 116842622 + MGP_AJ_P0056874 Casc5 protein_coding protein_coding MGP_AJ_T0056875.1 MGP_AJ_G0026291.1 mouse_genomes_project 2 116819634 116878589 + MGP_AJ_P0056875 Casc5 protein_coding protein_coding MGP_AJ_T0056876.1 MGP_AJ_G0026291.1 mouse_genomes_project 2 116819662 116839319 + MGP_AJ_P0056876 Casc5 protein_coding protein_coding MGP_AJ_T0056877.1 MGP_AJ_G0026291.1 mouse_genomes_project 2 116819665 116846269 + MGP_AJ_P0056877 Casc5 protein_coding protein_coding MGP_AJ_T0056878.1 MGP_AJ_G0026291.1 mouse_genomes_project 2 116829633 116879967 + MGP_AJ_P0056878 Casc5 protein_coding protein_coding MGP_AJ_T0007168.1 MGP_AJ_G0005875.1 mouse_genomes_project 2 23153272 23154270 + 1810012K08Rik lincRNA lincRNA MGP_AJ_T0013465.1 MGP_AJ_G0011560.1 mouse_genomes_project 2 21121913 21123397 + processed_pseudogene processed_pseudogene MGP_AJ_T0013690.1 MGP_AJ_G0011785.1 mouse_genomes_project 2 101440888 101441620 - processed_pseudogene processed_pseudogene MGP_AJ_T0004185.1 MGP_AJ_G0003693.1 mouse_genomes_project 2 172858770 172918604 - Gm10714 antisense antisense MGP_AJ_T0004186.1 MGP_AJ_G0003693.1 mouse_genomes_project 2 172859292 172859621 - Gm10714 antisense antisense MGP_AJ_T0053543.1 MGP_AJ_G0025496.1 mouse_genomes_project 2 25244880 25266210 + Olfm1 protein_coding processed_transcript MGP_AJ_T0053544.1 MGP_AJ_G0025496.1 mouse_genomes_project 2 25244880 25282141 + MGP_AJ_P0053544 Olfm1 protein_coding protein_coding MGP_AJ_T0053545.1 MGP_AJ_G0025496.1 mouse_genomes_project 2 25244981 25282415 + MGP_AJ_P0053545 Olfm1 protein_coding protein_coding MGP_AJ_T0053546.1 MGP_AJ_G0025496.1 mouse_genomes_project 2 25257447 25266210 + MGP_AJ_P0053546 Olfm1 protein_coding protein_coding MGP_AJ_T0053547.1 MGP_AJ_G0025496.1 mouse_genomes_project 2 25257447 25282415 + MGP_AJ_P0053547 Olfm1 protein_coding protein_coding MGP_AJ_T0055427.1 MGP_AJ_G0025830.1 mouse_genomes_project 2 72093077 72109953 + Hoxd4 protein_coding processed_transcript MGP_AJ_T0055428.1 MGP_AJ_G0025830.1 mouse_genomes_project 2 72103063 72110245 + MGP_AJ_P0055428 Hoxd4 protein_coding protein_coding MGP_AJ_T0055430.1 MGP_AJ_G0025830.1 mouse_genomes_project 2 72108158 72110208 + MGP_AJ_P0055430 Hoxd4 protein_coding protein_coding MGP_AJ_T0010337.1 MGP_AJ_G0008459.1 mouse_genomes_project 2 7491329 7491433 + Gm23578 miRNA miRNA MGP_AJ_T0013491.1 MGP_AJ_G0011586.1 mouse_genomes_project 2 32694075 32694382 - processed_pseudogene processed_pseudogene MGP_AJ_T0057829.1 MGP_AJ_G0026495.1 mouse_genomes_project 2 129541519 129570241 + MGP_AJ_P0057829 Smox protein_coding protein_coding MGP_AJ_T0057830.1 MGP_AJ_G0026495.1 mouse_genomes_project 2 129541787 129575181 + MGP_AJ_P0057830 Smox protein_coding protein_coding MGP_AJ_T0057831.1 MGP_AJ_G0026495.1 mouse_genomes_project 2 129541946 129570280 + MGP_AJ_P0057831 Smox protein_coding nonsense_mediated_decay MGP_AJ_T0057832.1 MGP_AJ_G0026495.1 mouse_genomes_project 2 129541966 129575170 + Smox protein_coding retained_intron MGP_AJ_T0057833.1 MGP_AJ_G0026495.1 mouse_genomes_project 2 129541966 129575170 + MGP_AJ_P0057833 Smox protein_coding nonsense_mediated_decay MGP_AJ_T0057834.1 MGP_AJ_G0026495.1 mouse_genomes_project 2 129541966 129575170 + MGP_AJ_P0057834 Smox protein_coding protein_coding MGP_AJ_T0057835.1 MGP_AJ_G0026495.1 mouse_genomes_project 2 129541966 129575170 + MGP_AJ_P0057835 Smox protein_coding protein_coding MGP_AJ_T0057836.1 MGP_AJ_G0026495.1 mouse_genomes_project 2 129541966 129575170 + MGP_AJ_P0057836 Smox protein_coding protein_coding MGP_AJ_T0057837.1 MGP_AJ_G0026495.1 mouse_genomes_project 2 129541966 129575170 + MGP_AJ_P0057837 Smox protein_coding protein_coding MGP_AJ_T0057838.1 MGP_AJ_G0026495.1 mouse_genomes_project 2 129541966 129575170 + MGP_AJ_P0057838 Smox protein_coding protein_coding MGP_AJ_T0057839.1 MGP_AJ_G0026495.1 mouse_genomes_project 2 129541966 129575170 + MGP_AJ_P0057839 Smox protein_coding protein_coding MGP_AJ_T0057840.1 MGP_AJ_G0026495.1 mouse_genomes_project 2 129541987 129575920 + MGP_AJ_P0057840 Smox protein_coding protein_coding MGP_AJ_T0057841.1 MGP_AJ_G0026495.1 mouse_genomes_project 2 129542016 129575165 + MGP_AJ_P0057841 Smox protein_coding protein_coding MGP_AJ_T0057842.1 MGP_AJ_G0026495.1 mouse_genomes_project 2 129542287 129562117 + MGP_AJ_P0057842 Smox protein_coding protein_coding MGP_AJ_T0057843.1 MGP_AJ_G0026495.1 mouse_genomes_project 2 129558891 129562154 + Smox protein_coding processed_transcript MGP_AJ_T0057844.1 MGP_AJ_G0026495.1 mouse_genomes_project 2 129570183 129574877 + MGP_AJ_P0057844 Smox protein_coding nonsense_mediated_decay MGP_AJ_T0057845.1 MGP_AJ_G0026495.1 mouse_genomes_project 2 129571896 129575139 + Smox protein_coding retained_intron MGP_AJ_T0058842.1 MGP_AJ_G0026739.1 mouse_genomes_project 2 155494507 155506482 - MGP_AJ_P0058842 Dsn1 protein_coding protein_coding MGP_AJ_T0058843.1 MGP_AJ_G0026739.1 mouse_genomes_project 2 155494519 155506561 - MGP_AJ_P0058843 Dsn1 protein_coding protein_coding MGP_AJ_T0058844.1 MGP_AJ_G0026739.1 mouse_genomes_project 2 155496966 155506437 - MGP_AJ_P0058844 Dsn1 protein_coding protein_coding MGP_AJ_T0058845.1 MGP_AJ_G0026739.1 mouse_genomes_project 2 155500927 155502662 - Dsn1 protein_coding retained_intron MGP_AJ_T0058846.1 MGP_AJ_G0026739.1 mouse_genomes_project 2 155501977 155505708 - MGP_AJ_P0058846 Dsn1 protein_coding protein_coding MGP_AJ_T0058847.1 MGP_AJ_G0026739.1 mouse_genomes_project 2 155504726 155505981 - MGP_AJ_P0058847 Dsn1 protein_coding protein_coding MGP_AJ_T0054263.1 MGP_AJ_G0025605.1 mouse_genomes_project 2 30119650 30122942 + MGP_AJ_P0054263 Rpl12 protein_coding protein_coding MGP_AJ_T0054264.1 MGP_AJ_G0025605.1 mouse_genomes_project 2 30119811 30123791 + Rpl12 protein_coding retained_intron MGP_AJ_T0054265.1 MGP_AJ_G0025605.1 mouse_genomes_project 2 30119820 30122491 + Rpl12 protein_coding retained_intron MGP_AJ_T0054266.1 MGP_AJ_G0025605.1 mouse_genomes_project 2 30119823 30121030 + Rpl12 protein_coding retained_intron MGP_AJ_T0054267.1 MGP_AJ_G0025605.1 mouse_genomes_project 2 30119831 30121403 + Rpl12 protein_coding retained_intron MGP_AJ_T0054268.1 MGP_AJ_G0025605.1 mouse_genomes_project 2 30119831 30122489 + MGP_AJ_P0054268 Rpl12 protein_coding nonsense_mediated_decay MGP_AJ_T0054269.1 MGP_AJ_G0025605.1 mouse_genomes_project 2 30119894 30122303 + MGP_AJ_P0054269 Rpl12 protein_coding unknown_likely_coding MGP_AJ_T0054270.1 MGP_AJ_G0025605.1 mouse_genomes_project 2 30120357 30121158 + Rpl12 protein_coding retained_intron MGP_AJ_T0055808.1 MGP_AJ_G0025956.1 mouse_genomes_project 2 84329809 84331933 - MGP_AJ_P0055808 protein_coding protein_coding MGP_AJ_T0058209.1 MGP_AJ_G0026593.1 mouse_genomes_project 2 148775517 148784045 + MGP_AJ_P0058209 Cst7 protein_coding protein_coding MGP_AJ_T0058027.1 MGP_AJ_G0026540.1 mouse_genomes_project 2 141637322 141890912 + MGP_AJ_P0058027 Pcsk2 protein_coding protein_coding MGP_AJ_T0058028.1 MGP_AJ_G0026540.1 mouse_genomes_project 2 141637437 141667861 + Pcsk2 protein_coding processed_transcript MGP_AJ_T0001053.1 MGP_AJ_G0000984.1 mouse_genomes_project 2 12135877 12138752 + TEC TEC MGP_AJ_T0058803.1 MGP_AJ_G0026732.1 mouse_genomes_project 2 155094626 155249468 + MGP_AJ_P0058803 Dlgap4 protein_coding protein_coding MGP_AJ_T0058804.1 MGP_AJ_G0026732.1 mouse_genomes_project 2 155094626 155249470 + MGP_AJ_P0058804 Dlgap4 protein_coding protein_coding MGP_AJ_T0058805.1 MGP_AJ_G0026732.1 mouse_genomes_project 2 155145892 155232494 + MGP_AJ_P0058805 Dlgap4 protein_coding protein_coding MGP_AJ_T0058806.1 MGP_AJ_G0026732.1 mouse_genomes_project 2 155183265 155248281 + MGP_AJ_P0058806 Dlgap4 protein_coding protein_coding MGP_AJ_T0058807.1 MGP_AJ_G0026732.1 mouse_genomes_project 2 155183265 155248286 + MGP_AJ_P0058807 Dlgap4 protein_coding protein_coding MGP_AJ_T0058808.1 MGP_AJ_G0026732.1 mouse_genomes_project 2 155204670 155248062 + Dlgap4 protein_coding retained_intron MGP_AJ_T0058809.1 MGP_AJ_G0026732.1 mouse_genomes_project 2 155204681 155233740 + MGP_AJ_P0058809 Dlgap4 protein_coding protein_coding MGP_AJ_T0058810.1 MGP_AJ_G0026732.1 mouse_genomes_project 2 155204684 155233577 + MGP_AJ_P0058810 Dlgap4 protein_coding protein_coding MGP_AJ_T0058811.1 MGP_AJ_G0026732.1 mouse_genomes_project 2 155204686 155247951 + MGP_AJ_P0058811 Dlgap4 protein_coding protein_coding MGP_AJ_T0058812.1 MGP_AJ_G0026732.1 mouse_genomes_project 2 155204694 155248010 + MGP_AJ_P0058812 Dlgap4 protein_coding protein_coding MGP_AJ_T0058813.1 MGP_AJ_G0026732.1 mouse_genomes_project 2 155205110 155249470 + MGP_AJ_P0058813 Dlgap4 protein_coding protein_coding MGP_AJ_T0058814.1 MGP_AJ_G0026732.1 mouse_genomes_project 2 155232730 155249477 + MGP_AJ_P0058814 Dlgap4 protein_coding protein_coding MGP_AJ_T0058815.1 MGP_AJ_G0026732.1 mouse_genomes_project 2 155245037 155247886 + Dlgap4 protein_coding processed_transcript MGP_AJ_T0004193.1 MGP_AJ_G0003698.1 mouse_genomes_project 2 180429732 180436377 + Uckl1os antisense antisense MGP_AJ_T0004194.1 MGP_AJ_G0003698.1 mouse_genomes_project 2 180429737 180431949 + Uckl1os antisense antisense MGP_AJ_T0004195.1 MGP_AJ_G0003698.1 mouse_genomes_project 2 180429770 180431956 + Uckl1os antisense antisense MGP_AJ_T0004196.1 MGP_AJ_G0003698.1 mouse_genomes_project 2 180430741 180432235 + Uckl1os antisense antisense MGP_AJ_T0004197.1 MGP_AJ_G0003698.1 mouse_genomes_project 2 180430784 180433409 + Uckl1os antisense antisense MGP_AJ_T0004198.1 MGP_AJ_G0003698.1 mouse_genomes_project 2 180430850 180432468 + Uckl1os antisense antisense MGP_AJ_T0004199.1 MGP_AJ_G0003698.1 mouse_genomes_project 2 180433499 180436428 + Uckl1os antisense antisense MGP_AJ_T0102458.1 MGP_AJ_G0040200.1 mouse_genomes_project 2 32033463 32034228 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0057311.1 MGP_AJ_G0026372.1 mouse_genomes_project 2 120149859 120174334 - MGP_AJ_P0057311 Duox2 protein_coding protein_coding MGP_AJ_T0057312.1 MGP_AJ_G0026372.1 mouse_genomes_project 2 120153314 120156196 - Duox2 protein_coding processed_transcript MGP_AJ_T0003949.1 MGP_AJ_G0003522.1 mouse_genomes_project 2 29097902 29098756 - Gm13442 antisense antisense MGP_AJ_T0003984.1 MGP_AJ_G0003548.1 mouse_genomes_project 2 59663700 59777162 + Gm13561 antisense antisense MGP_AJ_T0057654.1 MGP_AJ_G0026457.1 mouse_genomes_project 2 128049451 128088124 + MGP_AJ_P0057654 Tgm3 protein_coding protein_coding MGP_AJ_T0098836.1 MGP_AJ_G0036820.1 mouse_genomes_project 2 169998473 169998737 - Gm26489 scaRNA scaRNA MGP_AJ_T0007221.1 MGP_AJ_G0005918.1 mouse_genomes_project 2 63401853 63451070 + Gm28638 lincRNA lincRNA MGP_AJ_T0058931.1 MGP_AJ_G0026756.1 mouse_genomes_project 2 156701999 156748544 - MGP_AJ_P0058931 D630003M21Rik protein_coding protein_coding MGP_AJ_T0058932.1 MGP_AJ_G0026756.1 mouse_genomes_project 2 156705616 156748544 - MGP_AJ_P0058932 D630003M21Rik protein_coding protein_coding MGP_AJ_T0058933.1 MGP_AJ_G0026756.1 mouse_genomes_project 2 156715194 156748544 - MGP_AJ_P0058933 D630003M21Rik protein_coding protein_coding MGP_AJ_T0013791.1 MGP_AJ_G0011886.1 mouse_genomes_project 2 141952787 141953118 + processed_pseudogene processed_pseudogene MGP_AJ_T0056721.1 MGP_AJ_G0026255.1 mouse_genomes_project 2 110372020 110393492 - Ryr3 protein_coding processed_transcript MGP_AJ_T0056722.1 MGP_AJ_G0026255.1 mouse_genomes_project 2 110372029 110954993 - MGP_AJ_P0056722 Ryr3 protein_coding unknown_likely_coding MGP_AJ_T0056723.1 MGP_AJ_G0026255.1 mouse_genomes_project 2 110372045 110773110 - MGP_AJ_P0056723 Ryr3 protein_coding protein_coding MGP_AJ_T0056724.1 MGP_AJ_G0026255.1 mouse_genomes_project 2 110372045 110955054 - MGP_AJ_P0056724 Ryr3 protein_coding protein_coding MGP_AJ_T0056725.1 MGP_AJ_G0026255.1 mouse_genomes_project 2 110372711 110955071 - Ryr3 protein_coding processed_transcript MGP_AJ_T0056726.1 MGP_AJ_G0026255.1 mouse_genomes_project 2 110377352 110381289 - Ryr3 protein_coding processed_transcript MGP_AJ_T0056727.1 MGP_AJ_G0026255.1 mouse_genomes_project 2 110597922 110648955 - Ryr3 protein_coding retained_intron MGP_AJ_T0056728.1 MGP_AJ_G0026255.1 mouse_genomes_project 2 110708007 110955065 - Ryr3 protein_coding retained_intron MGP_AJ_T0056729.1 MGP_AJ_G0026255.1 mouse_genomes_project 2 110738783 110955099 - Ryr3 protein_coding retained_intron MGP_AJ_T0055595.1 MGP_AJ_G0025863.1 mouse_genomes_project 2 78080974 78095532 + MGP_AJ_P0055595 Dusp19 protein_coding protein_coding MGP_AJ_T0055596.1 MGP_AJ_G0025863.1 mouse_genomes_project 2 78081029 78095601 + Dusp19 protein_coding processed_transcript MGP_AJ_T0055597.1 MGP_AJ_G0025863.1 mouse_genomes_project 2 78081155 78094695 + Dusp19 protein_coding processed_transcript MGP_AJ_T0055598.1 MGP_AJ_G0025863.1 mouse_genomes_project 2 78081160 78088819 + Dusp19 protein_coding processed_transcript MGP_AJ_T0055600.1 MGP_AJ_G0025863.1 mouse_genomes_project 2 78081195 78096239 + Dusp19 protein_coding processed_transcript MGP_AJ_T0053042.1 MGP_AJ_G0025401.1 mouse_genomes_project 2 22177052 22178497 - Stpg3 protein_coding processed_transcript MGP_AJ_T0053043.1 MGP_AJ_G0025401.1 mouse_genomes_project 2 22177053 22179477 - Stpg3 protein_coding processed_transcript MGP_AJ_T0053044.1 MGP_AJ_G0025401.1 mouse_genomes_project 2 22177404 22179476 - MGP_AJ_P0053044 Stpg3 protein_coding protein_coding MGP_AJ_T0053045.1 MGP_AJ_G0025401.1 mouse_genomes_project 2 22177607 22179483 - MGP_AJ_P0053045 Stpg3 protein_coding protein_coding MGP_AJ_T0053046.1 MGP_AJ_G0025401.1 mouse_genomes_project 2 22177763 22179437 - Stpg3 protein_coding processed_transcript MGP_AJ_T0101026.1 MGP_AJ_G0038992.1 mouse_genomes_project 2 30121382 30121512 + Snora65 snoRNA snoRNA MGP_AJ_T0059570.1 MGP_AJ_G0026914.1 mouse_genomes_project 2 171168306 171170118 + MGP_AJ_P0059570 Fam209 protein_coding protein_coding MGP_AJ_T0013720.1 MGP_AJ_G0011815.1 mouse_genomes_project 2 109489944 109490630 + processed_pseudogene processed_pseudogene MGP_AJ_T0004065.1 MGP_AJ_G0003601.1 mouse_genomes_project 2 114602343 114631643 - Gm13990 antisense antisense MGP_AJ_T0052420.1 MGP_AJ_G0025299.1 mouse_genomes_project 2 2281542 2703601 - MGP_AJ_P0052420 Camk1d protein_coding protein_coding MGP_AJ_T0052421.1 MGP_AJ_G0025299.1 mouse_genomes_project 2 2286970 2667014 - MGP_AJ_P0052421 Camk1d protein_coding protein_coding MGP_AJ_T0052422.1 MGP_AJ_G0025299.1 mouse_genomes_project 2 2436109 2667368 - Camk1d protein_coding processed_transcript MGP_AJ_T0052423.1 MGP_AJ_G0025299.1 mouse_genomes_project 2 2555520 2703589 - Camk1d protein_coding processed_transcript MGP_AJ_T0011525.1 MGP_AJ_G0009647.1 mouse_genomes_project 2 173021530 173021594 + Gm27899 misc_RNA misc_RNA MGP_AJ_T0007278.1 MGP_AJ_G0005964.1 mouse_genomes_project 2 93472905 93475411 + Gm13799 lincRNA lincRNA MGP_AJ_T0013829.1 MGP_AJ_G0011924.1 mouse_genomes_project 2 153120697 153120906 - processed_pseudogene processed_pseudogene MGP_AJ_T0001055.1 MGP_AJ_G0000986.1 mouse_genomes_project 2 20428743 20430261 + TEC TEC MGP_AJ_T0053394.1 MGP_AJ_G0025468.1 mouse_genomes_project 2 23599435 23608768 + MGP_AJ_P0053394 Egfl7 protein_coding protein_coding MGP_AJ_T0053395.1 MGP_AJ_G0025468.1 mouse_genomes_project 2 23600468 23612066 + MGP_AJ_P0053395 Egfl7 protein_coding protein_coding MGP_AJ_T0053396.1 MGP_AJ_G0025468.1 mouse_genomes_project 2 23603273 23612063 + MGP_AJ_P0053396 Egfl7 protein_coding protein_coding MGP_AJ_T0053397.1 MGP_AJ_G0025468.1 mouse_genomes_project 2 23603289 23612064 + MGP_AJ_P0053397 Egfl7 protein_coding protein_coding MGP_AJ_T0053398.1 MGP_AJ_G0025468.1 mouse_genomes_project 2 23603314 23612502 + MGP_AJ_P0053398 Egfl7 protein_coding nonsense_mediated_decay MGP_AJ_T0053399.1 MGP_AJ_G0025468.1 mouse_genomes_project 2 23606016 23612063 + MGP_AJ_P0053399 Egfl7 protein_coding protein_coding MGP_AJ_T0053401.1 MGP_AJ_G0025468.1 mouse_genomes_project 2 23606047 23610294 + Egfl7 protein_coding processed_transcript MGP_AJ_T0053402.1 MGP_AJ_G0025468.1 mouse_genomes_project 2 23606058 23610325 + MGP_AJ_P0053402 Egfl7 protein_coding protein_coding MGP_AJ_T0053403.1 MGP_AJ_G0025468.1 mouse_genomes_project 2 23606075 23609873 + MGP_AJ_P0053403 Egfl7 protein_coding protein_coding MGP_AJ_T0053404.1 MGP_AJ_G0025468.1 mouse_genomes_project 2 23607926 23611825 + MGP_AJ_P0053404 Egfl7 protein_coding protein_coding MGP_AJ_T0053405.1 MGP_AJ_G0025468.1 mouse_genomes_project 2 23608718 23610949 + Egfl7 protein_coding retained_intron MGP_AJ_T0053406.1 MGP_AJ_G0025468.1 mouse_genomes_project 2 23609903 23610358 + Egfl7 protein_coding retained_intron MGP_AJ_T0053407.1 MGP_AJ_G0025468.1 mouse_genomes_project 2 23610350 23612058 + MGP_AJ_P0053407 Egfl7 protein_coding protein_coding MGP_AJ_T0053408.1 MGP_AJ_G0025468.1 mouse_genomes_project 2 23610414 23612064 + MGP_AJ_P0053408 Egfl7 protein_coding protein_coding MGP_AJ_T0053409.1 MGP_AJ_G0025468.1 mouse_genomes_project 2 23610819 23612064 + MGP_AJ_P0053409 Egfl7 protein_coding protein_coding MGP_AJ_T0053410.1 MGP_AJ_G0025468.1 mouse_genomes_project 2 23610820 23612064 + MGP_AJ_P0053410 Egfl7 protein_coding protein_coding MGP_AJ_T0053411.1 MGP_AJ_G0025468.1 mouse_genomes_project 2 23610831 23611672 + Egfl7 protein_coding retained_intron MGP_AJ_T0053412.1 MGP_AJ_G0025468.1 mouse_genomes_project 2 23611404 23612063 + Egfl7 protein_coding processed_transcript MGP_AJ_T0053413.1 MGP_AJ_G0025468.1 mouse_genomes_project 2 23611528 23612064 + Egfl7 protein_coding retained_intron MGP_AJ_T0053617.1 MGP_AJ_G0025512.1 mouse_genomes_project 2 25984192 26112626 - MGP_AJ_P0053617 Cfap77 protein_coding nonsense_mediated_decay MGP_AJ_T0053618.1 MGP_AJ_G0025512.1 mouse_genomes_project 2 25984196 26112641 - MGP_AJ_P0053618 Cfap77 protein_coding protein_coding MGP_AJ_T0053619.1 MGP_AJ_G0025512.1 mouse_genomes_project 2 25985071 26096941 - Cfap77 protein_coding processed_transcript MGP_AJ_T0053620.1 MGP_AJ_G0025512.1 mouse_genomes_project 2 26012021 26112668 - MGP_AJ_P0053620 Cfap77 protein_coding protein_coding MGP_AJ_T0053621.1 MGP_AJ_G0025512.1 mouse_genomes_project 2 26109498 26112661 - Cfap77 protein_coding processed_transcript MGP_AJ_T0013839.1 MGP_AJ_G0011934.1 mouse_genomes_project 2 154828960 154829688 - processed_pseudogene processed_pseudogene MGP_AJ_T0013551.1 MGP_AJ_G0011646.1 mouse_genomes_project 2 53403197 53403430 + processed_pseudogene processed_pseudogene MGP_AJ_T0058475.1 MGP_AJ_G0026671.1 mouse_genomes_project 2 152330630 152338443 + MGP_AJ_P0058475 Bpifa2 protein_coding protein_coding MGP_AJ_T0058476.1 MGP_AJ_G0026671.1 mouse_genomes_project 2 152330641 152336798 + MGP_AJ_P0058476 Bpifa2 protein_coding protein_coding MGP_AJ_T0058477.1 MGP_AJ_G0026671.1 mouse_genomes_project 2 152336067 152337969 + Bpifa2 protein_coding retained_intron MGP_AJ_T0058478.1 MGP_AJ_G0026671.1 mouse_genomes_project 2 152336949 152338440 + Bpifa2 protein_coding retained_intron MGP_AJ_T0013597.1 MGP_AJ_G0011692.1 mouse_genomes_project 2 70318496 70318793 + processed_pseudogene processed_pseudogene MGP_AJ_T0056714.1 MGP_AJ_G0026251.1 mouse_genomes_project 2 110120749 110156562 + MGP_AJ_P0056714 Katnbl1 protein_coding protein_coding MGP_AJ_T0056715.1 MGP_AJ_G0026251.1 mouse_genomes_project 2 110120764 110149839 + Katnbl1 protein_coding retained_intron MGP_AJ_T0055766.1 MGP_AJ_G0025916.1 mouse_genomes_project 2 83293820 83294804 - MGP_AJ_P0055766 Olfr1024 protein_coding protein_coding MGP_AJ_T0058296.1 MGP_AJ_G0026612.1 mouse_genomes_project 2 150124386 150157289 + MGP_AJ_P0058296 Rspo4 protein_coding protein_coding MGP_AJ_T0004074.1 MGP_AJ_G0003610.1 mouse_genomes_project 2 123160582 123170524 - Gm14002 antisense antisense MGP_AJ_T0060011.1 MGP_AJ_G0027004.1 mouse_genomes_project 2 180689363 180708865 + MGP_AJ_P0060011 Pcmtd2 protein_coding protein_coding MGP_AJ_T0060012.1 MGP_AJ_G0027004.1 mouse_genomes_project 2 180689422 180708850 + MGP_AJ_P0060012 Pcmtd2 protein_coding protein_coding MGP_AJ_T0060013.1 MGP_AJ_G0027004.1 mouse_genomes_project 2 180692343 180698016 + MGP_AJ_P0060013 Pcmtd2 protein_coding protein_coding MGP_AJ_T0060014.1 MGP_AJ_G0027004.1 mouse_genomes_project 2 180693966 180698070 + Pcmtd2 protein_coding retained_intron MGP_AJ_T0060015.1 MGP_AJ_G0027004.1 mouse_genomes_project 2 180695858 180706742 + MGP_AJ_P0060015 Pcmtd2 protein_coding protein_coding MGP_AJ_T0060016.1 MGP_AJ_G0027004.1 mouse_genomes_project 2 180702359 180707006 + Pcmtd2 protein_coding processed_transcript MGP_AJ_T0060017.1 MGP_AJ_G0027004.1 mouse_genomes_project 2 180702367 180706881 + Pcmtd2 protein_coding processed_transcript MGP_AJ_T0060018.1 MGP_AJ_G0027004.1 mouse_genomes_project 2 180702401 180706659 + Pcmtd2 protein_coding processed_transcript MGP_AJ_T0060019.1 MGP_AJ_G0027004.1 mouse_genomes_project 2 180702964 180706909 + Pcmtd2 protein_coding retained_intron MGP_AJ_T0010493.1 MGP_AJ_G0008615.1 mouse_genomes_project 2 180439163 180439232 - Mir7006 miRNA miRNA MGP_AJ_T0055249.1 MGP_AJ_G0025795.1 mouse_genomes_project 2 68363875 68390112 + MGP_AJ_P0055249 Dcaf17 protein_coding protein_coding MGP_AJ_T0055250.1 MGP_AJ_G0025795.1 mouse_genomes_project 2 68364291 68400296 + MGP_AJ_P0055250 Dcaf17 protein_coding protein_coding MGP_AJ_T0055251.1 MGP_AJ_G0025795.1 mouse_genomes_project 2 68364305 68381577 + MGP_AJ_P0055251 Dcaf17 protein_coding protein_coding MGP_AJ_T0055252.1 MGP_AJ_G0025795.1 mouse_genomes_project 2 68364328 68403578 + MGP_AJ_P0055252 Dcaf17 protein_coding protein_coding MGP_AJ_T0055253.1 MGP_AJ_G0025795.1 mouse_genomes_project 2 68364331 68386868 + MGP_AJ_P0055253 Dcaf17 protein_coding protein_coding MGP_AJ_T0055254.1 MGP_AJ_G0025795.1 mouse_genomes_project 2 68364393 68394751 + MGP_AJ_P0055254 Dcaf17 protein_coding nonsense_mediated_decay MGP_AJ_T0055255.1 MGP_AJ_G0025795.1 mouse_genomes_project 2 68364399 68392138 + MGP_AJ_P0055255 Dcaf17 protein_coding protein_coding MGP_AJ_T0055256.1 MGP_AJ_G0025795.1 mouse_genomes_project 2 68378733 68385461 + Dcaf17 protein_coding processed_transcript MGP_AJ_T0053795.1 MGP_AJ_G0025537.1 mouse_genomes_project 2 27317244 27343310 + MGP_AJ_P0053795 Gm28035 protein_coding protein_coding MGP_AJ_T0053796.1 MGP_AJ_G0025537.1 mouse_genomes_project 2 27317251 27343315 + MGP_AJ_P0053796 Gm28035 protein_coding protein_coding MGP_AJ_T0057436.1 MGP_AJ_G0026403.1 mouse_genomes_project 2 124510386 124549574 + MGP_AJ_P0057436 Slc27a2 protein_coding protein_coding MGP_AJ_T0057437.1 MGP_AJ_G0026403.1 mouse_genomes_project 2 124511569 124522794 + Slc27a2 protein_coding processed_transcript MGP_AJ_T0057438.1 MGP_AJ_G0026403.1 mouse_genomes_project 2 124514107 124549266 + MGP_AJ_P0057438 Slc27a2 protein_coding protein_coding MGP_AJ_T0057439.1 MGP_AJ_G0026403.1 mouse_genomes_project 2 124522868 124533843 + Slc27a2 protein_coding processed_transcript MGP_AJ_T0013694.1 MGP_AJ_G0011789.1 mouse_genomes_project 2 101474654 101474893 - processed_pseudogene processed_pseudogene MGP_AJ_T0004187.1 MGP_AJ_G0003694.1 mouse_genomes_project 2 173016162 173030220 - Nespas antisense antisense MGP_AJ_T0004188.1 MGP_AJ_G0003694.1 mouse_genomes_project 2 173017119 173030173 - Nespas antisense antisense MGP_AJ_T0004189.1 MGP_AJ_G0003694.1 mouse_genomes_project 2 173019275 173020358 - Nespas antisense antisense MGP_AJ_T0017918.1 MGP_AJ_G0015471.1 mouse_genomes_project 2 171120771 171135510 - Gm14455 processed_transcript processed_transcript MGP_AJ_T0052506.1 MGP_AJ_G0025313.1 mouse_genomes_project 2 6929965 7066908 - MGP_AJ_P0052506 Taf3 protein_coding protein_coding MGP_AJ_T0052507.1 MGP_AJ_G0025313.1 mouse_genomes_project 2 6930824 6957430 - Taf3 protein_coding processed_transcript MGP_AJ_T0052508.1 MGP_AJ_G0025313.1 mouse_genomes_project 2 6931609 6934368 - MGP_AJ_P0052508 Taf3 protein_coding protein_coding MGP_AJ_T0052509.1 MGP_AJ_G0025313.1 mouse_genomes_project 2 6931611 6933942 - MGP_AJ_P0052509 Taf3 protein_coding protein_coding MGP_AJ_T0055776.1 MGP_AJ_G0025925.1 mouse_genomes_project 2 83526108 83527050 - MGP_AJ_P0055776 protein_coding protein_coding MGP_AJ_T0010448.1 MGP_AJ_G0008570.1 mouse_genomes_project 2 118785899 118785976 - Gm44325 miRNA miRNA MGP_AJ_T0054606.1 MGP_AJ_G0025685.1 mouse_genomes_project 2 36251623 36255665 - MGP_AJ_P0054606 Rpl35 protein_coding protein_coding MGP_AJ_T0054607.1 MGP_AJ_G0025685.1 mouse_genomes_project 2 36251662 36255084 - Rpl35 protein_coding processed_transcript MGP_AJ_T0054608.1 MGP_AJ_G0025685.1 mouse_genomes_project 2 36254652 36255163 - Rpl35 protein_coding processed_transcript MGP_AJ_T0056618.1 MGP_AJ_G0026200.1 mouse_genomes_project 2 106926433 106987920 + MGP_AJ_P0056618 Kif18a protein_coding protein_coding MGP_AJ_T0056619.1 MGP_AJ_G0026200.1 mouse_genomes_project 2 106926521 106941783 + Kif18a protein_coding retained_intron MGP_AJ_T0056620.1 MGP_AJ_G0026200.1 mouse_genomes_project 2 106926535 106953440 + Kif18a protein_coding retained_intron MGP_AJ_T0056621.1 MGP_AJ_G0026200.1 mouse_genomes_project 2 106926547 106956773 + Kif18a protein_coding retained_intron MGP_AJ_T0056622.1 MGP_AJ_G0026200.1 mouse_genomes_project 2 106926564 106941498 + Kif18a protein_coding retained_intron MGP_AJ_T0056623.1 MGP_AJ_G0026200.1 mouse_genomes_project 2 106937718 106941783 + Kif18a protein_coding retained_intron MGP_AJ_T0013531.1 MGP_AJ_G0011626.1 mouse_genomes_project 2 47861488 47861667 - processed_pseudogene processed_pseudogene MGP_AJ_T0099776.1 MGP_AJ_G0037742.1 mouse_genomes_project 2 107875727 107875834 + Gm22997 snRNA snRNA MGP_AJ_T0102498.1 MGP_AJ_G0040240.1 mouse_genomes_project 2 85961750 85962686 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0007242.1 MGP_AJ_G0005935.1 mouse_genomes_project 2 72129371 72131456 - Haglr lincRNA lincRNA MGP_AJ_T0007243.1 MGP_AJ_G0005935.1 mouse_genomes_project 2 72131382 72143676 - Haglr lincRNA lincRNA MGP_AJ_T0013533.1 MGP_AJ_G0011628.1 mouse_genomes_project 2 47998852 47999264 - processed_pseudogene processed_pseudogene MGP_AJ_T0056649.1 MGP_AJ_G0026206.1 mouse_genomes_project 2 108010491 108012758 - MGP_AJ_P0056649 Fibin protein_coding protein_coding MGP_AJ_T0017749.1 MGP_AJ_G0015382.1 mouse_genomes_project 2 26322165 26330052 - 6530402F18Rik processed_transcript processed_transcript MGP_AJ_T0017750.1 MGP_AJ_G0015382.1 mouse_genomes_project 2 26327968 26330065 - 6530402F18Rik processed_transcript processed_transcript MGP_AJ_T0013696.1 MGP_AJ_G0011791.1 mouse_genomes_project 2 102198388 102199411 + processed_pseudogene processed_pseudogene MGP_AJ_T0054576.1 MGP_AJ_G0025678.1 mouse_genomes_project 2 35560747 35574855 + Lhx2 protein_coding retained_intron MGP_AJ_T0054577.1 MGP_AJ_G0025678.1 mouse_genomes_project 2 35562355 35575987 + MGP_AJ_P0054577 Lhx2 protein_coding protein_coding MGP_AJ_T0054578.1 MGP_AJ_G0025678.1 mouse_genomes_project 2 35572929 35575793 + MGP_AJ_P0054578 Lhx2 protein_coding nonsense_mediated_decay MGP_AJ_T0054579.1 MGP_AJ_G0025678.1 mouse_genomes_project 2 35572935 35591623 + MGP_AJ_P0054579 Lhx2 protein_coding protein_coding MGP_AJ_T0054580.1 MGP_AJ_G0025678.1 mouse_genomes_project 2 35573693 35575735 + MGP_AJ_P0054580 Lhx2 protein_coding protein_coding MGP_AJ_T0054581.1 MGP_AJ_G0025678.1 mouse_genomes_project 2 35574963 35581265 + Lhx2 protein_coding retained_intron MGP_AJ_T0007165.1 MGP_AJ_G0005873.1 mouse_genomes_project 2 22563830 22568499 + Gm26702 lincRNA lincRNA MGP_AJ_T0055646.1 MGP_AJ_G0025874.1 mouse_genomes_project 2 81976099 82026755 - MGP_AJ_P0055646 protein_coding protein_coding MGP_AJ_T0055647.1 MGP_AJ_G0025874.1 mouse_genomes_project 2 81976099 82026755 - MGP_AJ_P0055647 protein_coding protein_coding MGP_AJ_T0055648.1 MGP_AJ_G0025874.1 mouse_genomes_project 2 81976099 82026755 - MGP_AJ_P0055648 protein_coding protein_coding MGP_AJ_T0055649.1 MGP_AJ_G0025874.1 mouse_genomes_project 2 81976099 82026755 - MGP_AJ_P0055649 protein_coding protein_coding MGP_AJ_T0055650.1 MGP_AJ_G0025874.1 mouse_genomes_project 2 81976099 82026755 - MGP_AJ_P0055650 protein_coding protein_coding MGP_AJ_T0055651.1 MGP_AJ_G0025874.1 mouse_genomes_project 2 81976099 82026755 - MGP_AJ_P0055651 protein_coding protein_coding MGP_AJ_T0055652.1 MGP_AJ_G0025874.1 mouse_genomes_project 2 81976099 82026755 - MGP_AJ_P0055652 protein_coding protein_coding MGP_AJ_T0055653.1 MGP_AJ_G0025874.1 mouse_genomes_project 2 81976101 82026755 - MGP_AJ_P0055653 protein_coding protein_coding MGP_AJ_T0055654.1 MGP_AJ_G0025874.1 mouse_genomes_project 2 81976101 82026686 - MGP_AJ_P0055654 protein_coding protein_coding MGP_AJ_T0055655.1 MGP_AJ_G0025874.1 mouse_genomes_project 2 81976101 82026755 - MGP_AJ_P0055655 protein_coding protein_coding MGP_AJ_T0055656.1 MGP_AJ_G0025874.1 mouse_genomes_project 2 81976128 82026755 - MGP_AJ_P0055656 protein_coding protein_coding MGP_AJ_T0055657.1 MGP_AJ_G0025874.1 mouse_genomes_project 2 81976809 82026750 - MGP_AJ_P0055657 protein_coding protein_coding MGP_AJ_T0055658.1 MGP_AJ_G0025874.1 mouse_genomes_project 2 81976811 82026552 - protein_coding processed_transcript MGP_AJ_T0055659.1 MGP_AJ_G0025874.1 mouse_genomes_project 2 81976811 82026775 - MGP_AJ_P0055659 protein_coding protein_coding MGP_AJ_T0055660.1 MGP_AJ_G0025874.1 mouse_genomes_project 2 81976811 82026522 - MGP_AJ_P0055660 protein_coding protein_coding MGP_AJ_T0055661.1 MGP_AJ_G0025874.1 mouse_genomes_project 2 81976811 82025487 - MGP_AJ_P0055661 protein_coding protein_coding MGP_AJ_T0055663.1 MGP_AJ_G0025874.1 mouse_genomes_project 2 81978556 81985647 - protein_coding processed_transcript MGP_AJ_T0055664.1 MGP_AJ_G0025874.1 mouse_genomes_project 2 81978652 81985667 - protein_coding processed_transcript MGP_AJ_T0055665.1 MGP_AJ_G0025874.1 mouse_genomes_project 2 81978915 82026748 - MGP_AJ_P0055665 protein_coding protein_coding MGP_AJ_T0055666.1 MGP_AJ_G0025874.1 mouse_genomes_project 2 81984956 81988557 - protein_coding processed_transcript MGP_AJ_T0055667.1 MGP_AJ_G0025874.1 mouse_genomes_project 2 82000361 82014104 - protein_coding processed_transcript MGP_AJ_T0055668.1 MGP_AJ_G0025874.1 mouse_genomes_project 2 82000400 82024544 - protein_coding processed_transcript MGP_AJ_T0053078.1 MGP_AJ_G0025410.1 mouse_genomes_project 2 22241765 22249029 + MGP_AJ_P0053078 Tprn protein_coding protein_coding MGP_AJ_T0053079.1 MGP_AJ_G0025410.1 mouse_genomes_project 2 22243388 22248700 + Tprn protein_coding processed_transcript MGP_AJ_T0053080.1 MGP_AJ_G0025410.1 mouse_genomes_project 2 22246705 22248315 + Tprn protein_coding processed_transcript MGP_AJ_T0053081.1 MGP_AJ_G0025410.1 mouse_genomes_project 2 22248079 22248659 + Tprn protein_coding processed_transcript MGP_AJ_T0013436.1 MGP_AJ_G0011531.1 mouse_genomes_project 2 12559813 12560243 + processed_pseudogene processed_pseudogene MGP_AJ_T0056667.1 MGP_AJ_G0026215.1 mouse_genomes_project 2 108904329 108905241 - MGP_AJ_P0056667 Olfr1277 protein_coding protein_coding MGP_AJ_T0007353.1 MGP_AJ_G0006025.1 mouse_genomes_project 2 144931793 144943254 - Gm14114 lincRNA lincRNA MGP_AJ_T0098831.1 MGP_AJ_G0036815.1 mouse_genomes_project 2 48823365 48823495 - Gm23505 scaRNA scaRNA MGP_AJ_T0098952.1 MGP_AJ_G0036930.1 mouse_genomes_project 2 143422453 143464098 + Gm14093 sense_intronic sense_intronic MGP_AJ_T0058584.1 MGP_AJ_G0026700.1 mouse_genomes_project 2 153839766 153891564 - MGP_AJ_P0058584 Ncoa6 protein_coding protein_coding MGP_AJ_T0058585.1 MGP_AJ_G0026700.1 mouse_genomes_project 2 153839775 153927820 - MGP_AJ_P0058585 Ncoa6 protein_coding protein_coding MGP_AJ_T0058586.1 MGP_AJ_G0026700.1 mouse_genomes_project 2 153839779 153846096 - Ncoa6 protein_coding retained_intron MGP_AJ_T0058587.1 MGP_AJ_G0026700.1 mouse_genomes_project 2 153839779 153853859 - Ncoa6 protein_coding retained_intron MGP_AJ_T0058588.1 MGP_AJ_G0026700.1 mouse_genomes_project 2 153857130 153927908 - MGP_AJ_P0058588 Ncoa6 protein_coding protein_coding MGP_AJ_T0058589.1 MGP_AJ_G0026700.1 mouse_genomes_project 2 153865724 153869241 - Ncoa6 protein_coding processed_transcript MGP_AJ_T0058590.1 MGP_AJ_G0026700.1 mouse_genomes_project 2 153870614 153891566 - MGP_AJ_P0058590 Ncoa6 protein_coding protein_coding MGP_AJ_T0058591.1 MGP_AJ_G0026700.1 mouse_genomes_project 2 153888790 153927838 - Ncoa6 protein_coding processed_transcript MGP_AJ_T0013664.1 MGP_AJ_G0011759.1 mouse_genomes_project 2 89867378 89867711 + processed_pseudogene processed_pseudogene MGP_AJ_T0056668.1 MGP_AJ_G0026216.1 mouse_genomes_project 2 108925326 108926333 + MGP_AJ_P0056668 Olfr1278 protein_coding protein_coding MGP_AJ_T0013587.1 MGP_AJ_G0011682.1 mouse_genomes_project 2 67066008 67066633 + processed_pseudogene processed_pseudogene MGP_AJ_T0004147.1 MGP_AJ_G0003666.1 mouse_genomes_project 2 159363782 159415664 - Gm16751 antisense antisense MGP_AJ_T0017753.1 MGP_AJ_G0015385.1 mouse_genomes_project 2 27808377 27815213 - Gm14488 processed_transcript processed_transcript MGP_AJ_T0017754.1 MGP_AJ_G0015385.1 mouse_genomes_project 2 27808380 27812261 - Gm14488 processed_transcript retained_intron MGP_AJ_T0054749.1 MGP_AJ_G0025702.1 mouse_genomes_project 2 47617192 47634007 - Mmadhc protein_coding processed_transcript MGP_AJ_T0054750.1 MGP_AJ_G0025702.1 mouse_genomes_project 2 47617192 47634029 - MGP_AJ_P0054750 Mmadhc protein_coding protein_coding MGP_AJ_T0054751.1 MGP_AJ_G0025702.1 mouse_genomes_project 2 47617661 47633999 - Mmadhc protein_coding processed_transcript MGP_AJ_T0054752.1 MGP_AJ_G0025702.1 mouse_genomes_project 2 47618452 47633993 - MGP_AJ_P0054752 Mmadhc protein_coding protein_coding MGP_AJ_T0054753.1 MGP_AJ_G0025702.1 mouse_genomes_project 2 47618465 47633735 - Mmadhc protein_coding processed_transcript MGP_AJ_T0054754.1 MGP_AJ_G0025702.1 mouse_genomes_project 2 47618477 47626511 - Mmadhc protein_coding processed_transcript MGP_AJ_T0054755.1 MGP_AJ_G0025702.1 mouse_genomes_project 2 47625164 47633988 - Mmadhc protein_coding processed_transcript MGP_AJ_T0054756.1 MGP_AJ_G0025702.1 mouse_genomes_project 2 47625177 47634113 - MGP_AJ_P0054756 Mmadhc protein_coding protein_coding MGP_AJ_T0058628.1 MGP_AJ_G0026706.1 mouse_genomes_project 2 154160294 154188267 - MGP_AJ_P0058628 Edem2 protein_coding protein_coding MGP_AJ_T0058629.1 MGP_AJ_G0026706.1 mouse_genomes_project 2 154164335 154171960 - Edem2 protein_coding processed_transcript MGP_AJ_T0058630.1 MGP_AJ_G0026706.1 mouse_genomes_project 2 154167156 154169628 - Edem2 protein_coding retained_intron MGP_AJ_T0058631.1 MGP_AJ_G0026706.1 mouse_genomes_project 2 154167629 154174999 - Edem2 protein_coding retained_intron MGP_AJ_T0057094.1 MGP_AJ_G0026332.1 mouse_genomes_project 2 118427003 118439644 + MGP_AJ_P0057094 Haus2 protein_coding nonsense_mediated_decay MGP_AJ_T0057095.1 MGP_AJ_G0026332.1 mouse_genomes_project 2 118427050 118441573 + MGP_AJ_P0057095 Haus2 protein_coding protein_coding MGP_AJ_T0010420.1 MGP_AJ_G0008542.1 mouse_genomes_project 2 72107154 72107222 + Mir10b miRNA miRNA MGP_AJ_T0054509.1 MGP_AJ_G0025654.1 mouse_genomes_project 2 34053338 34054271 - MGP_AJ_P0054509 Olfr351 protein_coding protein_coding MGP_AJ_T0053258.1 MGP_AJ_G0025444.1 mouse_genomes_project 2 22710664 22711647 + MGP_AJ_P0053258 Bmyc protein_coding protein_coding MGP_AJ_T0055761.1 MGP_AJ_G0025911.1 mouse_genomes_project 2 83187070 83188000 - MGP_AJ_P0055761 Olfr1016 protein_coding protein_coding MGP_AJ_T0054304.1 MGP_AJ_G0025611.1 mouse_genomes_project 2 30618683 30630651 - MGP_AJ_P0054304 Zbtb43 protein_coding protein_coding MGP_AJ_T0054305.1 MGP_AJ_G0025611.1 mouse_genomes_project 2 30618683 30636818 - MGP_AJ_P0054305 Zbtb43 protein_coding protein_coding MGP_AJ_T0054306.1 MGP_AJ_G0025611.1 mouse_genomes_project 2 30621918 30636791 - MGP_AJ_P0054306 Zbtb43 protein_coding protein_coding MGP_AJ_T0054307.1 MGP_AJ_G0025611.1 mouse_genomes_project 2 30623017 30633381 - MGP_AJ_P0054307 Zbtb43 protein_coding protein_coding MGP_AJ_T0054308.1 MGP_AJ_G0025611.1 mouse_genomes_project 2 30623286 30636845 - MGP_AJ_P0054308 Zbtb43 protein_coding protein_coding MGP_AJ_T0057713.1 MGP_AJ_G0026471.1 mouse_genomes_project 2 128603232 128604890 + Mrps26 protein_coding retained_intron MGP_AJ_T0057714.1 MGP_AJ_G0026471.1 mouse_genomes_project 2 128603232 128608112 + MGP_AJ_P0057714 Mrps26 protein_coding protein_coding MGP_AJ_T0054674.1 MGP_AJ_G0025694.1 mouse_genomes_project 2 42260011 42396027 - MGP_AJ_P0054674 Zeb2 protein_coding protein_coding MGP_AJ_T0054675.1 MGP_AJ_G0025694.1 mouse_genomes_project 2 42263502 42391606 - MGP_AJ_P0054675 Zeb2 protein_coding protein_coding MGP_AJ_T0054676.1 MGP_AJ_G0025694.1 mouse_genomes_project 2 42263504 42388994 - MGP_AJ_P0054676 Zeb2 protein_coding protein_coding MGP_AJ_T0054677.1 MGP_AJ_G0025694.1 mouse_genomes_project 2 42263504 42391900 - MGP_AJ_P0054677 Zeb2 protein_coding protein_coding MGP_AJ_T0054678.1 MGP_AJ_G0025694.1 mouse_genomes_project 2 42264715 42391623 - MGP_AJ_P0054678 Zeb2 protein_coding protein_coding MGP_AJ_T0054679.1 MGP_AJ_G0025694.1 mouse_genomes_project 2 42264781 42388767 - MGP_AJ_P0054679 Zeb2 protein_coding protein_coding MGP_AJ_T0054680.1 MGP_AJ_G0025694.1 mouse_genomes_project 2 42264822 42391511 - MGP_AJ_P0054680 Zeb2 protein_coding protein_coding MGP_AJ_T0054681.1 MGP_AJ_G0025694.1 mouse_genomes_project 2 42273248 42388931 - MGP_AJ_P0054681 Zeb2 protein_coding protein_coding MGP_AJ_T0054682.1 MGP_AJ_G0025694.1 mouse_genomes_project 2 42278137 42389652 - MGP_AJ_P0054682 Zeb2 protein_coding protein_coding MGP_AJ_T0054683.1 MGP_AJ_G0025694.1 mouse_genomes_project 2 42278162 42300226 - MGP_AJ_P0054683 Zeb2 protein_coding protein_coding MGP_AJ_T0054684.1 MGP_AJ_G0025694.1 mouse_genomes_project 2 42278228 42388723 - MGP_AJ_P0054684 Zeb2 protein_coding protein_coding MGP_AJ_T0054685.1 MGP_AJ_G0025694.1 mouse_genomes_project 2 42279127 42332114 - Zeb2 protein_coding processed_transcript MGP_AJ_T0054686.1 MGP_AJ_G0025694.1 mouse_genomes_project 2 42279129 42389634 - MGP_AJ_P0054686 Zeb2 protein_coding protein_coding MGP_AJ_T0054687.1 MGP_AJ_G0025694.1 mouse_genomes_project 2 42285749 42389554 - Zeb2 protein_coding processed_transcript MGP_AJ_T0054688.1 MGP_AJ_G0025694.1 mouse_genomes_project 2 42294628 42391889 - MGP_AJ_P0054688 Zeb2 protein_coding protein_coding MGP_AJ_T0054689.1 MGP_AJ_G0025694.1 mouse_genomes_project 2 42298136 42391710 - Zeb2 protein_coding retained_intron MGP_AJ_T0054690.1 MGP_AJ_G0025694.1 mouse_genomes_project 2 42298215 42391866 - Zeb2 protein_coding retained_intron MGP_AJ_T0054691.1 MGP_AJ_G0025694.1 mouse_genomes_project 2 42300214 42389106 - MGP_AJ_P0054691 Zeb2 protein_coding protein_coding MGP_AJ_T0054692.1 MGP_AJ_G0025694.1 mouse_genomes_project 2 42300299 42391905 - MGP_AJ_P0054692 Zeb2 protein_coding protein_coding MGP_AJ_T0054693.1 MGP_AJ_G0025694.1 mouse_genomes_project 2 42300370 42389233 - MGP_AJ_P0054693 Zeb2 protein_coding protein_coding MGP_AJ_T0054694.1 MGP_AJ_G0025694.1 mouse_genomes_project 2 42373791 42389212 - MGP_AJ_P0054694 Zeb2 protein_coding protein_coding MGP_AJ_T0054695.1 MGP_AJ_G0025694.1 mouse_genomes_project 2 42382531 42391869 - Zeb2 protein_coding processed_transcript MGP_AJ_T0054696.1 MGP_AJ_G0025694.1 mouse_genomes_project 2 42382531 42388966 - Zeb2 protein_coding processed_transcript MGP_AJ_T0054697.1 MGP_AJ_G0025694.1 mouse_genomes_project 2 42382531 42391837 - Zeb2 protein_coding processed_transcript MGP_AJ_T0054698.1 MGP_AJ_G0025694.1 mouse_genomes_project 2 42383758 42388555 - Zeb2 protein_coding processed_transcript MGP_AJ_T0054699.1 MGP_AJ_G0025694.1 mouse_genomes_project 2 42384619 42388963 - Zeb2 protein_coding processed_transcript MGP_AJ_T0054700.1 MGP_AJ_G0025694.1 mouse_genomes_project 2 42384978 42391622 - Zeb2 protein_coding retained_intron MGP_AJ_T0054701.1 MGP_AJ_G0025694.1 mouse_genomes_project 2 42388567 42392160 - Zeb2 protein_coding processed_transcript MGP_AJ_T0058927.1 MGP_AJ_G0026755.1 mouse_genomes_project 2 156635514 156665527 - MGP_AJ_P0058927 Tgm2 protein_coding protein_coding MGP_AJ_T0058928.1 MGP_AJ_G0026755.1 mouse_genomes_project 2 156646439 156665484 - MGP_AJ_P0058928 Tgm2 protein_coding nonsense_mediated_decay MGP_AJ_T0058929.1 MGP_AJ_G0026755.1 mouse_genomes_project 2 156649475 156665457 - Tgm2 protein_coding retained_intron MGP_AJ_T0058930.1 MGP_AJ_G0026755.1 mouse_genomes_project 2 156653417 156658823 - Tgm2 protein_coding processed_transcript MGP_AJ_T0101021.1 MGP_AJ_G0038987.1 mouse_genomes_project 2 28301443 28301567 + Gm22516 snoRNA snoRNA MGP_AJ_T0013461.1 MGP_AJ_G0011556.1 mouse_genomes_project 2 19921262 19921799 - processed_pseudogene processed_pseudogene MGP_AJ_T0055177.1 MGP_AJ_G0025781.1 mouse_genomes_project 2 67057982 67089927 - MGP_AJ_P0055177 Ccdc173 protein_coding protein_coding MGP_AJ_T0055178.1 MGP_AJ_G0025781.1 mouse_genomes_project 2 67081223 67082281 - Ccdc173 protein_coding processed_transcript MGP_AJ_T0098833.1 MGP_AJ_G0036817.1 mouse_genomes_project 2 104490670 104490794 + Gm22813 scaRNA scaRNA MGP_AJ_T0053622.1 MGP_AJ_G0025513.1 mouse_genomes_project 2 26123200 26150310 + MGP_AJ_P0053622 Ttf1 protein_coding protein_coding MGP_AJ_T0053623.1 MGP_AJ_G0025513.1 mouse_genomes_project 2 26123204 26150270 + Ttf1 protein_coding retained_intron MGP_AJ_T0053624.1 MGP_AJ_G0025513.1 mouse_genomes_project 2 26137626 26144275 + Ttf1 protein_coding retained_intron MGP_AJ_T0053625.1 MGP_AJ_G0025513.1 mouse_genomes_project 2 26146087 26147371 + Ttf1 protein_coding retained_intron MGP_AJ_T0057423.1 MGP_AJ_G0026399.1 mouse_genomes_project 2 123937119 124107991 - MGP_AJ_P0057423 Fam227b protein_coding protein_coding MGP_AJ_T0057424.1 MGP_AJ_G0026399.1 mouse_genomes_project 2 123937266 124107971 - MGP_AJ_P0057424 Fam227b protein_coding protein_coding MGP_AJ_T0057425.1 MGP_AJ_G0026399.1 mouse_genomes_project 2 123937266 124102246 - MGP_AJ_P0057425 Fam227b protein_coding protein_coding MGP_AJ_T0057426.1 MGP_AJ_G0026399.1 mouse_genomes_project 2 123951273 124107991 - Fam227b protein_coding retained_intron MGP_AJ_T0007155.1 MGP_AJ_G0005866.1 mouse_genomes_project 2 16708582 16718219 - Gm13346 lincRNA lincRNA MGP_AJ_T0013756.1 MGP_AJ_G0011851.1 mouse_genomes_project 2 128439652 128440485 + processed_pseudogene processed_pseudogene MGP_AJ_T0055784.1 MGP_AJ_G0025933.1 mouse_genomes_project 2 83659194 83660138 - MGP_AJ_P0055784 Olfr1046 protein_coding protein_coding MGP_AJ_T0001064.1 MGP_AJ_G0000995.1 mouse_genomes_project 2 32961270 32964285 - TEC TEC MGP_AJ_T0054549.1 MGP_AJ_G0025674.1 mouse_genomes_project 2 34701656 34866978 - MGP_AJ_P0054549 protein_coding nonsense_mediated_decay MGP_AJ_T0054555.1 MGP_AJ_G0025674.1 mouse_genomes_project 2 34788473 34812540 - protein_coding processed_transcript MGP_AJ_T0054556.1 MGP_AJ_G0025674.1 mouse_genomes_project 2 34798017 34804994 - MGP_AJ_P0054556 protein_coding nonsense_mediated_decay MGP_AJ_T0054557.1 MGP_AJ_G0025674.1 mouse_genomes_project 2 34802509 34869249 - MGP_AJ_P0054557 protein_coding unknown_likely_coding MGP_AJ_T0054558.1 MGP_AJ_G0025674.1 mouse_genomes_project 2 34854741 34923879 - protein_coding processed_transcript MGP_AJ_T0054559.1 MGP_AJ_G0025674.1 mouse_genomes_project 2 34855270 34878739 - MGP_AJ_P0054559 protein_coding protein_coding MGP_AJ_T0054560.1 MGP_AJ_G0025674.1 mouse_genomes_project 2 34860668 34924390 - MGP_AJ_P0054560 protein_coding protein_coding MGP_AJ_T0054561.1 MGP_AJ_G0025674.1 mouse_genomes_project 2 34866878 34923680 - protein_coding processed_transcript MGP_AJ_T0004133.1 MGP_AJ_G0003653.1 mouse_genomes_project 2 153032500 153035217 - Gm14198 antisense antisense MGP_AJ_T0102487.1 MGP_AJ_G0040229.1 mouse_genomes_project 2 84026684 84027626 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0101033.1 MGP_AJ_G0038999.1 mouse_genomes_project 2 43901731 43901848 - Gm25264 snoRNA snoRNA MGP_AJ_T0054401.1 MGP_AJ_G0025625.1 mouse_genomes_project 2 32279074 32294759 - MGP_AJ_P0054401 AI182371 protein_coding unknown_likely_coding MGP_AJ_T0054402.1 MGP_AJ_G0025625.1 mouse_genomes_project 2 32280639 32294791 - MGP_AJ_P0054402 AI182371 protein_coding protein_coding MGP_AJ_T0054403.1 MGP_AJ_G0025625.1 mouse_genomes_project 2 32282694 32294790 - MGP_AJ_P0054403 AI182371 protein_coding nonsense_mediated_decay MGP_AJ_T0054404.1 MGP_AJ_G0025625.1 mouse_genomes_project 2 32283035 32289965 - AI182371 protein_coding processed_transcript MGP_AJ_T0054405.1 MGP_AJ_G0025625.1 mouse_genomes_project 2 32285768 32295649 - AI182371 protein_coding processed_transcript MGP_AJ_T0053059.1 MGP_AJ_G0025406.1 mouse_genomes_project 2 22218208 22219379 - MGP_AJ_P0053059 Cysrt1 protein_coding protein_coding MGP_AJ_T0053060.1 MGP_AJ_G0025406.1 mouse_genomes_project 2 22218379 22219288 - MGP_AJ_P0053060 Cysrt1 protein_coding protein_coding MGP_AJ_T0053061.1 MGP_AJ_G0025406.1 mouse_genomes_project 2 22218547 22221842 - MGP_AJ_P0053061 Cysrt1 protein_coding protein_coding MGP_AJ_T0098940.1 MGP_AJ_G0036918.1 mouse_genomes_project 2 1078141 1081193 + Gm38085 sense_intronic sense_intronic MGP_AJ_T0055036.1 MGP_AJ_G0025753.1 mouse_genomes_project 2 62381780 62531548 - MGP_AJ_P0055036 Cobll1 protein_coding protein_coding MGP_AJ_T0055037.1 MGP_AJ_G0025753.1 mouse_genomes_project 2 62381791 62531643 - MGP_AJ_P0055037 Cobll1 protein_coding protein_coding MGP_AJ_T0055038.1 MGP_AJ_G0025753.1 mouse_genomes_project 2 62381791 62531548 - MGP_AJ_P0055038 Cobll1 protein_coding protein_coding MGP_AJ_T0055039.1 MGP_AJ_G0025753.1 mouse_genomes_project 2 62381791 62531548 - MGP_AJ_P0055039 Cobll1 protein_coding protein_coding MGP_AJ_T0055040.1 MGP_AJ_G0025753.1 mouse_genomes_project 2 62381791 62531495 - MGP_AJ_P0055040 Cobll1 protein_coding protein_coding MGP_AJ_T0055041.1 MGP_AJ_G0025753.1 mouse_genomes_project 2 62392594 62399340 - Cobll1 protein_coding processed_transcript MGP_AJ_T0055042.1 MGP_AJ_G0025753.1 mouse_genomes_project 2 62419448 62531966 - MGP_AJ_P0055042 Cobll1 protein_coding protein_coding MGP_AJ_T0055043.1 MGP_AJ_G0025753.1 mouse_genomes_project 2 62427257 62532018 - MGP_AJ_P0055043 Cobll1 protein_coding protein_coding MGP_AJ_T0055044.1 MGP_AJ_G0025753.1 mouse_genomes_project 2 62429825 62529020 - Cobll1 protein_coding processed_transcript MGP_AJ_T0055045.1 MGP_AJ_G0025753.1 mouse_genomes_project 2 62429858 62531495 - MGP_AJ_P0055045 Cobll1 protein_coding protein_coding MGP_AJ_T0055046.1 MGP_AJ_G0025753.1 mouse_genomes_project 2 62441780 62531969 - Cobll1 protein_coding processed_transcript MGP_AJ_T0055047.1 MGP_AJ_G0025753.1 mouse_genomes_project 2 62444337 62532325 - Cobll1 protein_coding processed_transcript MGP_AJ_T0055048.1 MGP_AJ_G0025753.1 mouse_genomes_project 2 62444501 62531396 - Cobll1 protein_coding processed_transcript MGP_AJ_T0007177.1 MGP_AJ_G0005882.1 mouse_genomes_project 2 27752391 27764606 - Gm14486 lincRNA lincRNA MGP_AJ_T0007178.1 MGP_AJ_G0005882.1 mouse_genomes_project 2 27752536 27772691 - Gm14486 lincRNA lincRNA MGP_AJ_T0058345.1 MGP_AJ_G0026636.1 mouse_genomes_project 2 150882592 150888777 - Defb45 protein_coding processed_transcript MGP_AJ_T0058346.1 MGP_AJ_G0026636.1 mouse_genomes_project 2 150882592 150885880 - MGP_AJ_P0058346 Defb45 protein_coding protein_coding MGP_AJ_T0098941.1 MGP_AJ_G0036919.1 mouse_genomes_project 2 1113118 1116762 + Gm37814 sense_intronic sense_intronic MGP_AJ_T0098943.1 MGP_AJ_G0036921.1 mouse_genomes_project 2 1187893 1190166 + Gm38348 sense_intronic sense_intronic MGP_AJ_T0017849.1 MGP_AJ_G0015440.1 mouse_genomes_project 2 120609171 120625066 + 4930417H01Rik processed_transcript processed_transcript MGP_AJ_T0017850.1 MGP_AJ_G0015440.1 mouse_genomes_project 2 120610031 120627542 + 4930417H01Rik processed_transcript processed_transcript MGP_AJ_T0017851.1 MGP_AJ_G0015440.1 mouse_genomes_project 2 120610033 120625066 + 4930417H01Rik processed_transcript processed_transcript MGP_AJ_T0017852.1 MGP_AJ_G0015440.1 mouse_genomes_project 2 120611375 120627543 + 4930417H01Rik processed_transcript processed_transcript MGP_AJ_T0017853.1 MGP_AJ_G0015440.1 mouse_genomes_project 2 120611377 120625177 + 4930417H01Rik processed_transcript processed_transcript MGP_AJ_T0017854.1 MGP_AJ_G0015440.1 mouse_genomes_project 2 120615182 120628402 + 4930417H01Rik processed_transcript processed_transcript MGP_AJ_T0056139.1 MGP_AJ_G0026110.1 mouse_genomes_project 2 88887047 89057748 - MGP_AJ_P0056139 1110051M20Rik protein_coding protein_coding MGP_AJ_T0056140.1 MGP_AJ_G0026110.1 mouse_genomes_project 2 88890435 89057740 - MGP_AJ_P0056140 1110051M20Rik protein_coding protein_coding MGP_AJ_T0056141.1 MGP_AJ_G0026110.1 mouse_genomes_project 2 88894407 88895807 - 1110051M20Rik protein_coding processed_transcript MGP_AJ_T0056142.1 MGP_AJ_G0026110.1 mouse_genomes_project 2 88916848 89057769 - 1110051M20Rik protein_coding processed_transcript MGP_AJ_T0056143.1 MGP_AJ_G0026110.1 mouse_genomes_project 2 88996253 89057795 - 1110051M20Rik protein_coding processed_transcript MGP_AJ_T0056144.1 MGP_AJ_G0026110.1 mouse_genomes_project 2 89031904 89057763 - 1110051M20Rik protein_coding processed_transcript MGP_AJ_T0056145.1 MGP_AJ_G0026110.1 mouse_genomes_project 2 89031953 89057830 - 1110051M20Rik protein_coding processed_transcript MGP_AJ_T0059772.1 MGP_AJ_G0026966.1 mouse_genomes_project 2 179502984 179547821 - MGP_AJ_P0059772 Dido1 protein_coding protein_coding MGP_AJ_T0059773.1 MGP_AJ_G0026966.1 mouse_genomes_project 2 179513291 179555470 - MGP_AJ_P0059773 Dido1 protein_coding protein_coding MGP_AJ_T0059774.1 MGP_AJ_G0026966.1 mouse_genomes_project 2 179513293 179521567 - MGP_AJ_P0059774 Dido1 protein_coding protein_coding MGP_AJ_T0059775.1 MGP_AJ_G0026966.1 mouse_genomes_project 2 179514216 179547821 - MGP_AJ_P0059775 Dido1 protein_coding protein_coding MGP_AJ_T0059776.1 MGP_AJ_G0026966.1 mouse_genomes_project 2 179526516 179555470 - MGP_AJ_P0059776 Dido1 protein_coding protein_coding MGP_AJ_T0059777.1 MGP_AJ_G0026966.1 mouse_genomes_project 2 179526531 179547821 - MGP_AJ_P0059777 Dido1 protein_coding protein_coding MGP_AJ_T0059778.1 MGP_AJ_G0026966.1 mouse_genomes_project 2 179530482 179547463 - Dido1 protein_coding processed_transcript MGP_AJ_T0004052.1 MGP_AJ_G0003593.1 mouse_genomes_project 2 103389099 103390199 + Gm13954 antisense antisense MGP_AJ_T0013594.1 MGP_AJ_G0011689.1 mouse_genomes_project 2 69881513 69881914 + processed_pseudogene processed_pseudogene MGP_AJ_T0058057.1 MGP_AJ_G0026549.1 mouse_genomes_project 2 142445724 142458789 + MGP_AJ_P0058057 Pet117 protein_coding protein_coding MGP_AJ_T0010463.1 MGP_AJ_G0008585.1 mouse_genomes_project 2 146177043 146177122 + Gm27420 miRNA miRNA MGP_AJ_T0013601.1 MGP_AJ_G0011696.1 mouse_genomes_project 2 71192064 71192328 + processed_pseudogene processed_pseudogene MGP_AJ_T0054761.1 MGP_AJ_G0025705.1 mouse_genomes_project 2 49255699 49266181 - MGP_AJ_P0054761 Rbm43 protein_coding protein_coding MGP_AJ_T0054762.1 MGP_AJ_G0025705.1 mouse_genomes_project 2 49255699 49266337 - MGP_AJ_P0054762 Rbm43 protein_coding protein_coding MGP_AJ_T0054763.1 MGP_AJ_G0025705.1 mouse_genomes_project 2 49255702 49265818 - MGP_AJ_P0054763 Rbm43 protein_coding protein_coding MGP_AJ_T0054764.1 MGP_AJ_G0025705.1 mouse_genomes_project 2 49256633 49258263 - Rbm43 protein_coding processed_transcript MGP_AJ_T0054765.1 MGP_AJ_G0025705.1 mouse_genomes_project 2 49256898 49264568 - Rbm43 protein_coding processed_transcript MGP_AJ_T0054766.1 MGP_AJ_G0025705.1 mouse_genomes_project 2 49257117 49265848 - Rbm43 protein_coding processed_transcript MGP_AJ_T0004180.1 MGP_AJ_G0003691.1 mouse_genomes_project 2 171818153 171823084 + Ctcflos antisense antisense MGP_AJ_T0004181.1 MGP_AJ_G0003691.1 mouse_genomes_project 2 171818170 171842255 + Ctcflos antisense antisense MGP_AJ_T0004182.1 MGP_AJ_G0003691.1 mouse_genomes_project 2 171828630 171839265 + Ctcflos antisense antisense MGP_AJ_T0004183.1 MGP_AJ_G0003691.1 mouse_genomes_project 2 171834717 171843190 + Ctcflos antisense antisense MGP_AJ_T0055798.1 MGP_AJ_G0025946.1 mouse_genomes_project 2 83971173 83972273 - MGP_AJ_P0055798 Olfr1080 protein_coding protein_coding MGP_AJ_T0057087.1 MGP_AJ_G0026331.1 mouse_genomes_project 2 118421859 118427141 - MGP_AJ_P0057087 Lrrc57 protein_coding protein_coding MGP_AJ_T0057088.1 MGP_AJ_G0026331.1 mouse_genomes_project 2 118421859 118426976 - MGP_AJ_P0057088 Lrrc57 protein_coding protein_coding MGP_AJ_T0057089.1 MGP_AJ_G0026331.1 mouse_genomes_project 2 118421859 118427131 - MGP_AJ_P0057089 Lrrc57 protein_coding protein_coding MGP_AJ_T0057090.1 MGP_AJ_G0026331.1 mouse_genomes_project 2 118421859 118426936 - MGP_AJ_P0057090 Lrrc57 protein_coding protein_coding MGP_AJ_T0057091.1 MGP_AJ_G0026331.1 mouse_genomes_project 2 118422440 118425593 - MGP_AJ_P0057091 Lrrc57 protein_coding protein_coding MGP_AJ_T0057092.1 MGP_AJ_G0026331.1 mouse_genomes_project 2 118423592 118427129 - MGP_AJ_P0057092 Lrrc57 protein_coding protein_coding MGP_AJ_T0057093.1 MGP_AJ_G0026331.1 mouse_genomes_project 2 118426438 118426923 - Lrrc57 protein_coding retained_intron MGP_AJ_T0056486.1 MGP_AJ_G0026169.1 mouse_genomes_project 2 101599659 101631611 + MGP_AJ_P0056486 Lmo2 protein_coding protein_coding MGP_AJ_T0056487.1 MGP_AJ_G0026169.1 mouse_genomes_project 2 101599668 101632439 + MGP_AJ_P0056487 Lmo2 protein_coding protein_coding MGP_AJ_T0056489.1 MGP_AJ_G0026169.1 mouse_genomes_project 2 101620078 101631653 + MGP_AJ_P0056489 Lmo2 protein_coding protein_coding MGP_AJ_T0056490.1 MGP_AJ_G0026169.1 mouse_genomes_project 2 101620691 101632416 + MGP_AJ_P0056490 Lmo2 protein_coding protein_coding MGP_AJ_T0056491.1 MGP_AJ_G0026169.1 mouse_genomes_project 2 101620703 101626707 + MGP_AJ_P0056491 Lmo2 protein_coding protein_coding MGP_AJ_T0056492.1 MGP_AJ_G0026169.1 mouse_genomes_project 2 101620785 101632435 + MGP_AJ_P0056492 Lmo2 protein_coding protein_coding MGP_AJ_T0056493.1 MGP_AJ_G0026169.1 mouse_genomes_project 2 101620806 101632400 + MGP_AJ_P0056493 Lmo2 protein_coding protein_coding MGP_AJ_T0056494.1 MGP_AJ_G0026169.1 mouse_genomes_project 2 101621741 101631477 + Lmo2 protein_coding processed_transcript MGP_AJ_T0007139.1 MGP_AJ_G0005854.1 mouse_genomes_project 2 6184209 6191958 + 1700061F12Rik lincRNA lincRNA MGP_AJ_T0055912.1 MGP_AJ_G0026044.1 mouse_genomes_project 2 86763129 86764065 - MGP_AJ_P0055912 Olfr1221 protein_coding protein_coding MGP_AJ_T0054795.1 MGP_AJ_G0025710.1 mouse_genomes_project 2 49731899 49757789 - MGP_AJ_P0054795 Arl5a protein_coding unknown_likely_coding MGP_AJ_T0054796.1 MGP_AJ_G0025710.1 mouse_genomes_project 2 49731900 49758055 - MGP_AJ_P0054796 Arl5a protein_coding protein_coding MGP_AJ_T0054797.1 MGP_AJ_G0025710.1 mouse_genomes_project 2 49736342 49746290 - Arl5a protein_coding retained_intron MGP_AJ_T0055583.1 MGP_AJ_G0025860.1 mouse_genomes_project 2 77768831 77778789 + Dnajc10 protein_coding processed_transcript MGP_AJ_T0055584.1 MGP_AJ_G0025860.1 mouse_genomes_project 2 77768831 77808034 + MGP_AJ_P0055584 Dnajc10 protein_coding protein_coding MGP_AJ_T0055585.1 MGP_AJ_G0025860.1 mouse_genomes_project 2 77785322 77787683 + Dnajc10 protein_coding processed_transcript MGP_AJ_T0055586.1 MGP_AJ_G0025860.1 mouse_genomes_project 2 77787582 77794842 + Dnajc10 protein_coding processed_transcript MGP_AJ_T0055587.1 MGP_AJ_G0025860.1 mouse_genomes_project 2 77801644 77804932 + Dnajc10 protein_coding processed_transcript MGP_AJ_T0052908.1 MGP_AJ_G0025383.1 mouse_genomes_project 2 21222479 21226374 + MGP_AJ_P0052908 Il1f5 protein_coding protein_coding MGP_AJ_T0052909.1 MGP_AJ_G0025383.1 mouse_genomes_project 2 21222736 21224544 + Il1f5 protein_coding retained_intron MGP_AJ_T0052910.1 MGP_AJ_G0025383.1 mouse_genomes_project 2 21222747 21227095 + Il1f5 protein_coding processed_transcript MGP_AJ_T0052911.1 MGP_AJ_G0025383.1 mouse_genomes_project 2 21222964 21226838 + MGP_AJ_P0052911 Il1f5 protein_coding protein_coding MGP_AJ_T0007372.1 MGP_AJ_G0006040.1 mouse_genomes_project 2 154926615 154930448 - Gm14224 lincRNA lincRNA MGP_AJ_T0053252.1 MGP_AJ_G0025441.1 mouse_genomes_project 2 22670914 22675737 + MGP_AJ_P0053252 Lcn6 protein_coding protein_coding MGP_AJ_T0053253.1 MGP_AJ_G0025441.1 mouse_genomes_project 2 22673394 22675734 + MGP_AJ_P0053253 Lcn6 protein_coding protein_coding MGP_AJ_T0053254.1 MGP_AJ_G0025441.1 mouse_genomes_project 2 22674089 22675730 + MGP_AJ_P0053254 Lcn6 protein_coding protein_coding MGP_AJ_T0053255.1 MGP_AJ_G0025441.1 mouse_genomes_project 2 22674241 22675730 + Lcn6 protein_coding processed_transcript MGP_AJ_T0013629.1 MGP_AJ_G0011724.1 mouse_genomes_project 2 80806319 80806803 + processed_pseudogene processed_pseudogene MGP_AJ_T0059222.1 MGP_AJ_G0026842.1 mouse_genomes_project 2 163344112 163361084 + MGP_AJ_P0059222 Zswim3 protein_coding protein_coding MGP_AJ_T0003907.1 MGP_AJ_G0003490.1 mouse_genomes_project 2 15072251 15079346 + Gm13330 antisense antisense MGP_AJ_T0013785.1 MGP_AJ_G0011880.1 mouse_genomes_project 2 139900361 139900831 + processed_pseudogene processed_pseudogene MGP_AJ_T0010484.1 MGP_AJ_G0008606.1 mouse_genomes_project 2 172424374 172424493 - Mir6340 miRNA miRNA MGP_AJ_T0101053.1 MGP_AJ_G0039019.1 mouse_genomes_project 2 94893484 94893613 - Gm23317 snoRNA snoRNA MGP_AJ_T0013673.1 MGP_AJ_G0011768.1 mouse_genomes_project 2 93335557 93335677 - processed_pseudogene processed_pseudogene MGP_AJ_T0057540.1 MGP_AJ_G0026426.1 mouse_genomes_project 2 125516606 125531560 - MGP_AJ_P0057540 Prom2 protein_coding protein_coding MGP_AJ_T0057541.1 MGP_AJ_G0026426.1 mouse_genomes_project 2 125517088 125531478 - MGP_AJ_P0057541 Prom2 protein_coding protein_coding MGP_AJ_T0057542.1 MGP_AJ_G0026426.1 mouse_genomes_project 2 125524858 125525290 - Prom2 protein_coding processed_transcript MGP_AJ_T0057543.1 MGP_AJ_G0026426.1 mouse_genomes_project 2 125530331 125531507 - Prom2 protein_coding retained_intron MGP_AJ_T0101049.1 MGP_AJ_G0039015.1 mouse_genomes_project 2 92262010 92262141 + Gm24318 snoRNA snoRNA MGP_AJ_T0057039.1 MGP_AJ_G0026327.1 mouse_genomes_project 2 118217554 118238364 + Ganc protein_coding processed_transcript MGP_AJ_T0057040.1 MGP_AJ_G0026327.1 mouse_genomes_project 2 118217859 118234198 + Ganc protein_coding processed_transcript MGP_AJ_T0057041.1 MGP_AJ_G0026327.1 mouse_genomes_project 2 118217860 118271817 + Ganc protein_coding processed_transcript MGP_AJ_T0057042.1 MGP_AJ_G0026327.1 mouse_genomes_project 2 118217868 118239134 + Ganc protein_coding processed_transcript MGP_AJ_T0057043.1 MGP_AJ_G0026327.1 mouse_genomes_project 2 118217882 118275413 + Ganc protein_coding processed_transcript MGP_AJ_T0057044.1 MGP_AJ_G0026327.1 mouse_genomes_project 2 118217972 118234196 + Ganc protein_coding processed_transcript MGP_AJ_T0057045.1 MGP_AJ_G0026327.1 mouse_genomes_project 2 118217996 118230364 + Ganc protein_coding processed_transcript MGP_AJ_T0057046.1 MGP_AJ_G0026327.1 mouse_genomes_project 2 118218426 118276259 + MGP_AJ_P0057046 Ganc protein_coding protein_coding MGP_AJ_T0057047.1 MGP_AJ_G0026327.1 mouse_genomes_project 2 118218432 118229070 + Ganc protein_coding processed_transcript MGP_AJ_T0057048.1 MGP_AJ_G0026327.1 mouse_genomes_project 2 118218638 118275425 + Ganc protein_coding processed_transcript MGP_AJ_T0057049.1 MGP_AJ_G0026327.1 mouse_genomes_project 2 118219772 118274786 + Ganc protein_coding processed_transcript MGP_AJ_T0057050.1 MGP_AJ_G0026327.1 mouse_genomes_project 2 118226155 118251470 + Ganc protein_coding retained_intron MGP_AJ_T0057051.1 MGP_AJ_G0026327.1 mouse_genomes_project 2 118238205 118245750 + Ganc protein_coding processed_transcript MGP_AJ_T0057052.1 MGP_AJ_G0026327.1 mouse_genomes_project 2 118267114 118274908 + Ganc protein_coding retained_intron MGP_AJ_T0101986.1 MGP_AJ_G0039810.1 mouse_genomes_project 2 35899851 35916417 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_AJ_T0007380.1 MGP_AJ_G0006046.1 mouse_genomes_project 2 158438616 158472451 - Gm14223 lincRNA lincRNA MGP_AJ_T0013615.1 MGP_AJ_G0011710.1 mouse_genomes_project 2 76467786 76468237 - processed_pseudogene processed_pseudogene MGP_AJ_T0098656.1 MGP_AJ_G0036640.1 mouse_genomes_project 2 116118608 116118702 + Gm22651 rRNA rRNA MGP_AJ_T0007227.1 MGP_AJ_G0005924.1 mouse_genomes_project 2 69080638 69082717 - Gm17250 lincRNA lincRNA MGP_AJ_T0055077.1 MGP_AJ_G0025758.1 mouse_genomes_project 2 63357993 63401531 - MGP_AJ_P0055077 Galnt3 protein_coding protein_coding MGP_AJ_T0055078.1 MGP_AJ_G0025758.1 mouse_genomes_project 2 63359313 63370551 - Galnt3 protein_coding processed_transcript MGP_AJ_T0055079.1 MGP_AJ_G0025758.1 mouse_genomes_project 2 63366486 63369398 - Galnt3 protein_coding processed_transcript MGP_AJ_T0055080.1 MGP_AJ_G0025758.1 mouse_genomes_project 2 63370967 63377869 - Galnt3 protein_coding processed_transcript MGP_AJ_T0003888.1 MGP_AJ_G0003475.1 mouse_genomes_project 2 1430205 1438441 - Gm13175 antisense antisense MGP_AJ_T0010410.1 MGP_AJ_G0008532.1 mouse_genomes_project 2 39692974 39693104 - Mir6336 miRNA miRNA MGP_AJ_T0057346.1 MGP_AJ_G0026381.1 mouse_genomes_project 2 120588019 120609765 - MGP_AJ_P0057346 Slc30a4 protein_coding protein_coding MGP_AJ_T0057347.1 MGP_AJ_G0026381.1 mouse_genomes_project 2 120590180 120609789 - MGP_AJ_P0057347 Slc30a4 protein_coding protein_coding MGP_AJ_T0013647.1 MGP_AJ_G0011742.1 mouse_genomes_project 2 84813510 84813742 - processed_pseudogene processed_pseudogene MGP_AJ_T0001031.1 MGP_AJ_G0000962.1 mouse_genomes_project 2 8721723 8722144 + TEC TEC MGP_AJ_T0099800.1 MGP_AJ_G0037766.1 mouse_genomes_project 2 163135934 163136041 + Gm25512 snRNA snRNA MGP_AJ_T0001096.1 MGP_AJ_G0001025.1 mouse_genomes_project 2 125253418 125254024 - TEC TEC MGP_AJ_T0001097.1 MGP_AJ_G0001025.1 mouse_genomes_project 2 125253678 125254002 - TEC TEC MGP_AJ_T0054016.1 MGP_AJ_G0025569.1 mouse_genomes_project 2 28941805 28975844 - MGP_AJ_P0054016 Fibcd1 protein_coding protein_coding MGP_AJ_T0013492.1 MGP_AJ_G0011587.1 mouse_genomes_project 2 33334762 33335127 - processed_pseudogene processed_pseudogene MGP_AJ_T0054512.1 MGP_AJ_G0025657.1 mouse_genomes_project 2 34101327 34102281 + MGP_AJ_P0054512 Olfr354 protein_coding protein_coding MGP_AJ_T0052523.1 MGP_AJ_G0025318.1 mouse_genomes_project 2 7389658 7461571 + MGP_AJ_P0052523 Sfmbt2 protein_coding protein_coding MGP_AJ_T0052524.1 MGP_AJ_G0025318.1 mouse_genomes_project 2 7389659 7461571 + MGP_AJ_P0052524 Sfmbt2 protein_coding protein_coding MGP_AJ_T0052525.1 MGP_AJ_G0025318.1 mouse_genomes_project 2 7389666 7425575 + Sfmbt2 protein_coding processed_transcript MGP_AJ_T0052526.1 MGP_AJ_G0025318.1 mouse_genomes_project 2 7392320 7461571 + MGP_AJ_P0052526 Sfmbt2 protein_coding protein_coding MGP_AJ_T0052527.1 MGP_AJ_G0025318.1 mouse_genomes_project 2 7392320 7617643 + MGP_AJ_P0052527 Sfmbt2 protein_coding protein_coding MGP_AJ_T0052528.1 MGP_AJ_G0025318.1 mouse_genomes_project 2 7392332 7413916 + Sfmbt2 protein_coding processed_transcript MGP_AJ_T0052529.1 MGP_AJ_G0025318.1 mouse_genomes_project 2 7392334 7617655 + MGP_AJ_P0052529 Sfmbt2 protein_coding protein_coding MGP_AJ_T0054760.1 MGP_AJ_G0025704.1 mouse_genomes_project 2 48956030 48956928 + MGP_AJ_P0054760 Tas2r134 protein_coding protein_coding MGP_AJ_T0004058.1 MGP_AJ_G0003598.1 mouse_genomes_project 2 111441693 111459808 - 4930533B01Rik antisense antisense MGP_AJ_T0003936.1 MGP_AJ_G0003511.1 mouse_genomes_project 2 24352732 24357326 + AA645442 antisense antisense MGP_AJ_T0058303.1 MGP_AJ_G0026616.1 mouse_genomes_project 2 150363709 150377922 + MGP_AJ_P0058303 Scrt2 protein_coding protein_coding MGP_AJ_T0010459.1 MGP_AJ_G0008581.1 mouse_genomes_project 2 131617874 131617961 + Mir3090 miRNA miRNA MGP_AJ_T0053811.1 MGP_AJ_G0025540.1 mouse_genomes_project 2 27365452 27386447 + MGP_AJ_P0053811 Gm28038 protein_coding protein_coding MGP_AJ_T0013682.1 MGP_AJ_G0011777.1 mouse_genomes_project 2 98043090 98043877 - processed_pseudogene processed_pseudogene MGP_AJ_T0013828.1 MGP_AJ_G0011923.1 mouse_genomes_project 2 152415185 152416922 - processed_pseudogene processed_pseudogene MGP_AJ_T0013742.1 MGP_AJ_G0011837.1 mouse_genomes_project 2 119572254 119572933 + processed_pseudogene processed_pseudogene MGP_AJ_T0055817.1 MGP_AJ_G0025964.1 mouse_genomes_project 2 84491328 84492267 - MGP_AJ_P0055817 Olfr1106 protein_coding protein_coding MGP_AJ_T0057458.1 MGP_AJ_G0026408.1 mouse_genomes_project 2 124676779 124678177 - MGP_AJ_P0057458 protein_coding protein_coding MGP_AJ_T0007225.1 MGP_AJ_G0005922.1 mouse_genomes_project 2 69051972 69063454 + Platr26 lincRNA lincRNA MGP_AJ_T0102503.1 MGP_AJ_G0040245.1 mouse_genomes_project 2 87678484 87679414 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0007260.1 MGP_AJ_G0005950.1 mouse_genomes_project 2 81891686 81916419 - Gm13710 lincRNA lincRNA MGP_AJ_T0058219.1 MGP_AJ_G0026597.1 mouse_genomes_project 2 148948886 148971509 + MGP_AJ_P0058219 Entpd6 protein_coding protein_coding MGP_AJ_T0058220.1 MGP_AJ_G0026597.1 mouse_genomes_project 2 148948925 148963187 + Entpd6 protein_coding retained_intron MGP_AJ_T0058221.1 MGP_AJ_G0026597.1 mouse_genomes_project 2 148948936 148963646 + Entpd6 protein_coding processed_transcript MGP_AJ_T0058222.1 MGP_AJ_G0026597.1 mouse_genomes_project 2 148949015 148953069 + Entpd6 protein_coding processed_transcript MGP_AJ_T0055973.1 MGP_AJ_G0026084.1 mouse_genomes_project 2 87723350 87724399 - MGP_AJ_P0055973 Olfr32 protein_coding protein_coding MGP_AJ_T0053129.1 MGP_AJ_G0025419.1 mouse_genomes_project 2 22355961 22361864 + MGP_AJ_P0053129 Sapcd2 protein_coding protein_coding MGP_AJ_T0053130.1 MGP_AJ_G0025419.1 mouse_genomes_project 2 22355970 22360454 + MGP_AJ_P0053130 Sapcd2 protein_coding protein_coding MGP_AJ_T0053131.1 MGP_AJ_G0025419.1 mouse_genomes_project 2 22355974 22360454 + MGP_AJ_P0053131 Sapcd2 protein_coding protein_coding MGP_AJ_T0053132.1 MGP_AJ_G0025419.1 mouse_genomes_project 2 22356000 22358779 + Sapcd2 protein_coding processed_transcript MGP_AJ_T0053133.1 MGP_AJ_G0025419.1 mouse_genomes_project 2 22358656 22359923 + Sapcd2 protein_coding processed_transcript MGP_AJ_T0053134.1 MGP_AJ_G0025419.1 mouse_genomes_project 2 22359424 22360428 + Sapcd2 protein_coding processed_transcript MGP_AJ_T0053135.1 MGP_AJ_G0025419.1 mouse_genomes_project 2 22359610 22360451 + Sapcd2 protein_coding processed_transcript MGP_AJ_T0057950.1 MGP_AJ_G0026520.1 mouse_genomes_project 2 134129000 134136360 + MGP_AJ_P0057950 Lamp5 protein_coding protein_coding MGP_AJ_T0057951.1 MGP_AJ_G0026520.1 mouse_genomes_project 2 134134755 134146745 + MGP_AJ_P0057951 Lamp5 protein_coding protein_coding MGP_AJ_T0057952.1 MGP_AJ_G0026520.1 mouse_genomes_project 2 134135080 134138323 + Lamp5 protein_coding retained_intron MGP_AJ_T0057953.1 MGP_AJ_G0026520.1 mouse_genomes_project 2 134135080 134136042 + Lamp5 protein_coding processed_transcript MGP_AJ_T0057954.1 MGP_AJ_G0026520.1 mouse_genomes_project 2 134136259 134146733 + Lamp5 protein_coding processed_transcript MGP_AJ_T0059138.1 MGP_AJ_G0026809.1 mouse_genomes_project 2 162799891 162802401 - MGP_AJ_P0059138 Svs4 protein_coding protein_coding MGP_AJ_T0007253.1 MGP_AJ_G0005945.1 mouse_genomes_project 2 75483890 75502167 + lincRNA lincRNA MGP_AJ_T0007254.1 MGP_AJ_G0005945.1 mouse_genomes_project 2 75483936 75623735 + lincRNA lincRNA MGP_AJ_T0013444.1 MGP_AJ_G0011539.1 mouse_genomes_project 2 15402688 15403099 - processed_pseudogene processed_pseudogene MGP_AJ_T0055758.1 MGP_AJ_G0025908.1 mouse_genomes_project 2 83141748 83142684 - MGP_AJ_P0055758 Olfr1012 protein_coding protein_coding MGP_AJ_T0055471.1 MGP_AJ_G0025845.1 mouse_genomes_project 2 74070299 74080154 - MGP_AJ_P0055471 Fkbp7 protein_coding protein_coding MGP_AJ_T0055472.1 MGP_AJ_G0025845.1 mouse_genomes_project 2 74070318 74072499 - Fkbp7 protein_coding processed_transcript MGP_AJ_T0055473.1 MGP_AJ_G0025845.1 mouse_genomes_project 2 74072962 74080200 - MGP_AJ_P0055473 Fkbp7 protein_coding nonsense_mediated_decay MGP_AJ_T0055474.1 MGP_AJ_G0025845.1 mouse_genomes_project 2 74078445 74080169 - Fkbp7 protein_coding retained_intron MGP_AJ_T0059364.1 MGP_AJ_G0026866.1 mouse_genomes_project 2 164642886 164724567 - Sulf2 protein_coding processed_transcript MGP_AJ_T0059365.1 MGP_AJ_G0026866.1 mouse_genomes_project 2 164643406 164644753 - Sulf2 protein_coding retained_intron MGP_AJ_T0059366.1 MGP_AJ_G0026866.1 mouse_genomes_project 2 164643522 164723798 - MGP_AJ_P0059366 Sulf2 protein_coding protein_coding MGP_AJ_T0059367.1 MGP_AJ_G0026866.1 mouse_genomes_project 2 164643549 164646853 - Sulf2 protein_coding processed_transcript MGP_AJ_T0059368.1 MGP_AJ_G0026866.1 mouse_genomes_project 2 164662132 164723768 - Sulf2 protein_coding processed_transcript MGP_AJ_T0059369.1 MGP_AJ_G0026866.1 mouse_genomes_project 2 164701606 164723385 - Sulf2 protein_coding processed_transcript MGP_AJ_T0053153.1 MGP_AJ_G0025422.1 mouse_genomes_project 2 22406832 22408749 + MGP_AJ_P0053153 Fut7 protein_coding protein_coding MGP_AJ_T0053154.1 MGP_AJ_G0025422.1 mouse_genomes_project 2 22406944 22409937 + MGP_AJ_P0053154 Fut7 protein_coding protein_coding MGP_AJ_T0053155.1 MGP_AJ_G0025422.1 mouse_genomes_project 2 22407118 22409940 + MGP_AJ_P0053155 Fut7 protein_coding protein_coding MGP_AJ_T0053156.1 MGP_AJ_G0025422.1 mouse_genomes_project 2 22407259 22409940 + MGP_AJ_P0053156 Fut7 protein_coding protein_coding MGP_AJ_T0053157.1 MGP_AJ_G0025422.1 mouse_genomes_project 2 22408213 22408657 + Fut7 protein_coding processed_transcript MGP_AJ_T0013795.1 MGP_AJ_G0011890.1 mouse_genomes_project 2 142438816 142442355 - processed_pseudogene processed_pseudogene MGP_AJ_T0055402.1 MGP_AJ_G0025821.1 mouse_genomes_project 2 71900157 71959526 - MGP_AJ_P0055402 Lnpk1 protein_coding protein_coding MGP_AJ_T0055403.1 MGP_AJ_G0025821.1 mouse_genomes_project 2 71900200 71959526 - MGP_AJ_P0055403 Lnpk1 protein_coding protein_coding MGP_AJ_T0055404.1 MGP_AJ_G0025821.1 mouse_genomes_project 2 71900207 71912969 - Lnpk1 protein_coding processed_transcript MGP_AJ_T0055405.1 MGP_AJ_G0025821.1 mouse_genomes_project 2 71901199 71959509 - Lnpk1 protein_coding processed_transcript MGP_AJ_T0055406.1 MGP_AJ_G0025821.1 mouse_genomes_project 2 71901906 71958802 - MGP_AJ_P0055406 Lnpk1 protein_coding protein_coding MGP_AJ_T0055407.1 MGP_AJ_G0025821.1 mouse_genomes_project 2 71911771 71959957 - MGP_AJ_P0055407 Lnpk1 protein_coding protein_coding MGP_AJ_T0055408.1 MGP_AJ_G0025821.1 mouse_genomes_project 2 71917272 71959095 - MGP_AJ_P0055408 Lnpk1 protein_coding protein_coding MGP_AJ_T0055409.1 MGP_AJ_G0025821.1 mouse_genomes_project 2 71927256 71934962 - Lnpk1 protein_coding processed_transcript MGP_AJ_T0055410.1 MGP_AJ_G0025821.1 mouse_genomes_project 2 71927882 71960013 - Lnpk1 protein_coding processed_transcript MGP_AJ_T0055411.1 MGP_AJ_G0025821.1 mouse_genomes_project 2 71931040 71931860 - Lnpk1 protein_coding processed_transcript MGP_AJ_T0055412.1 MGP_AJ_G0025821.1 mouse_genomes_project 2 71931333 71959494 - Lnpk1 protein_coding processed_transcript MGP_AJ_T0055413.1 MGP_AJ_G0025821.1 mouse_genomes_project 2 71949399 71959458 - Lnpk1 protein_coding processed_transcript MGP_AJ_T0055414.1 MGP_AJ_G0025821.1 mouse_genomes_project 2 71949664 71959472 - MGP_AJ_P0055414 Lnpk1 protein_coding protein_coding MGP_AJ_T0013646.1 MGP_AJ_G0011741.1 mouse_genomes_project 2 84797120 84797535 + processed_pseudogene processed_pseudogene MGP_AJ_T0013815.1 MGP_AJ_G0011910.1 mouse_genomes_project 2 148274509 148275504 - processed_pseudogene processed_pseudogene MGP_AJ_T0003903.1 MGP_AJ_G0003487.1 mouse_genomes_project 2 11789978 11822865 - Gm10848 antisense antisense MGP_AJ_T0058712.1 MGP_AJ_G0026721.1 mouse_genomes_project 2 154542913 154582971 - MGP_AJ_P0058712 Cpne1 protein_coding protein_coding MGP_AJ_T0058713.1 MGP_AJ_G0026721.1 mouse_genomes_project 2 154542916 154582924 - Cpne1 protein_coding retained_intron MGP_AJ_T0058714.1 MGP_AJ_G0026721.1 mouse_genomes_project 2 154542916 154582975 - MGP_AJ_P0058714 Cpne1 protein_coding protein_coding MGP_AJ_T0058717.1 MGP_AJ_G0026721.1 mouse_genomes_project 2 154542918 154582979 - MGP_AJ_P0058717 Cpne1 protein_coding protein_coding MGP_AJ_T0058718.1 MGP_AJ_G0026721.1 mouse_genomes_project 2 154544404 154545367 - Cpne1 protein_coding processed_transcript MGP_AJ_T0058719.1 MGP_AJ_G0026721.1 mouse_genomes_project 2 154544426 154582937 - MGP_AJ_P0058719 Cpne1 protein_coding protein_coding MGP_AJ_T0058720.1 MGP_AJ_G0026721.1 mouse_genomes_project 2 154544460 154547324 - MGP_AJ_P0058720 Cpne1 protein_coding protein_coding MGP_AJ_T0058721.1 MGP_AJ_G0026721.1 mouse_genomes_project 2 154544465 154547349 - Cpne1 protein_coding retained_intron MGP_AJ_T0058722.1 MGP_AJ_G0026721.1 mouse_genomes_project 2 154544582 154582940 - MGP_AJ_P0058722 Cpne1 protein_coding nonsense_mediated_decay MGP_AJ_T0058723.1 MGP_AJ_G0026721.1 mouse_genomes_project 2 154544587 154549230 - MGP_AJ_P0058723 Cpne1 protein_coding nonsense_mediated_decay MGP_AJ_T0058724.1 MGP_AJ_G0026721.1 mouse_genomes_project 2 154545169 154547622 - Cpne1 protein_coding retained_intron MGP_AJ_T0058725.1 MGP_AJ_G0026721.1 mouse_genomes_project 2 154545272 154583001 - MGP_AJ_P0058725 Cpne1 protein_coding protein_coding MGP_AJ_T0058726.1 MGP_AJ_G0026721.1 mouse_genomes_project 2 154548468 154582945 - MGP_AJ_P0058726 Cpne1 protein_coding protein_coding MGP_AJ_T0058727.1 MGP_AJ_G0026721.1 mouse_genomes_project 2 154548489 154549661 - Cpne1 protein_coding retained_intron MGP_AJ_T0058728.1 MGP_AJ_G0026721.1 mouse_genomes_project 2 154549236 154582995 - MGP_AJ_P0058728 Cpne1 protein_coding protein_coding MGP_AJ_T0058729.1 MGP_AJ_G0026721.1 mouse_genomes_project 2 154549643 154582945 - MGP_AJ_P0058729 Cpne1 protein_coding protein_coding MGP_AJ_T0058730.1 MGP_AJ_G0026721.1 mouse_genomes_project 2 154549969 154582899 - MGP_AJ_P0058730 Cpne1 protein_coding protein_coding MGP_AJ_T0059704.1 MGP_AJ_G0026951.1 mouse_genomes_project 2 178905296 178920801 + protein_coding retained_intron MGP_AJ_T0059705.1 MGP_AJ_G0026951.1 mouse_genomes_project 2 178905300 178915519 + protein_coding retained_intron MGP_AJ_T0059706.1 MGP_AJ_G0026951.1 mouse_genomes_project 2 178905300 178920808 + MGP_AJ_P0059706 protein_coding nonsense_mediated_decay MGP_AJ_T0059707.1 MGP_AJ_G0026951.1 mouse_genomes_project 2 178905304 178920680 + MGP_AJ_P0059707 protein_coding unknown_likely_coding MGP_AJ_T0059708.1 MGP_AJ_G0026951.1 mouse_genomes_project 2 178913461 178917802 + protein_coding retained_intron MGP_AJ_T0059709.1 MGP_AJ_G0026951.1 mouse_genomes_project 2 178917896 178920806 + protein_coding retained_intron MGP_AJ_T0013428.1 MGP_AJ_G0011523.1 mouse_genomes_project 2 11755391 11756109 + processed_pseudogene processed_pseudogene MGP_AJ_T0059189.1 MGP_AJ_G0026829.1 mouse_genomes_project 2 163169789 163173897 - MGP_AJ_P0059189 Wfdc16 protein_coding protein_coding MGP_AJ_T0055854.1 MGP_AJ_G0025992.1 mouse_genomes_project 2 85295187 85296123 + MGP_AJ_P0055854 Olfr1140 protein_coding protein_coding MGP_AJ_T0013623.1 MGP_AJ_G0011718.1 mouse_genomes_project 2 78348648 78351702 + processed_pseudogene processed_pseudogene MGP_AJ_T0056828.1 MGP_AJ_G0026279.1 mouse_genomes_project 2 116437416 116473524 + MGP_AJ_P0056828 Pak6 protein_coding protein_coding MGP_AJ_T0056829.1 MGP_AJ_G0026279.1 mouse_genomes_project 2 116437875 116439069 + Pak6 protein_coding retained_intron MGP_AJ_T0056830.1 MGP_AJ_G0026279.1 mouse_genomes_project 2 116438177 116453176 + Pak6 protein_coding processed_transcript MGP_AJ_T0056831.1 MGP_AJ_G0026279.1 mouse_genomes_project 2 116452634 116473522 + MGP_AJ_P0056831 Pak6 protein_coding protein_coding MGP_AJ_T0056832.1 MGP_AJ_G0026279.1 mouse_genomes_project 2 116452668 116472678 + Pak6 protein_coding retained_intron MGP_AJ_T0017919.1 MGP_AJ_G0015472.1 mouse_genomes_project 2 171729630 171730083 - Gm20490 processed_transcript processed_transcript MGP_AJ_T0010458.1 MGP_AJ_G0008580.1 mouse_genomes_project 2 129335326 129335412 + Mir103-2 miRNA miRNA MGP_AJ_T0053601.1 MGP_AJ_G0025508.1 mouse_genomes_project 2 25753830 25870040 + MGP_AJ_P0053601 Ak8 protein_coding protein_coding MGP_AJ_T0053602.1 MGP_AJ_G0025508.1 mouse_genomes_project 2 25753873 25790593 + Ak8 protein_coding processed_transcript MGP_AJ_T0053603.1 MGP_AJ_G0025508.1 mouse_genomes_project 2 25798398 25816283 + Ak8 protein_coding processed_transcript MGP_AJ_T0059032.1 MGP_AJ_G0026777.1 mouse_genomes_project 2 160061345 161178416 - MGP_AJ_P0059032 Ptprt protein_coding protein_coding MGP_AJ_T0059033.1 MGP_AJ_G0026777.1 mouse_genomes_project 2 160061345 161178416 - MGP_AJ_P0059033 Ptprt protein_coding protein_coding MGP_AJ_T0059034.1 MGP_AJ_G0026777.1 mouse_genomes_project 2 160065708 161178363 - MGP_AJ_P0059034 Ptprt protein_coding protein_coding MGP_AJ_T0059035.1 MGP_AJ_G0026777.1 mouse_genomes_project 2 160066859 161178416 - MGP_AJ_P0059035 Ptprt protein_coding protein_coding MGP_AJ_T0059036.1 MGP_AJ_G0026777.1 mouse_genomes_project 2 160232143 160332404 - Ptprt protein_coding processed_transcript MGP_AJ_T0059037.1 MGP_AJ_G0026777.1 mouse_genomes_project 2 160542241 160668282 - Ptprt protein_coding processed_transcript MGP_AJ_T0013479.1 MGP_AJ_G0011574.1 mouse_genomes_project 2 28669261 28670056 - processed_pseudogene processed_pseudogene MGP_AJ_T0052976.1 MGP_AJ_G0025392.1 mouse_genomes_project 2 21917481 21927001 + MGP_AJ_P0052976 Dph7 protein_coding protein_coding MGP_AJ_T0052977.1 MGP_AJ_G0025392.1 mouse_genomes_project 2 21917503 21926999 + MGP_AJ_P0052977 Dph7 protein_coding nonsense_mediated_decay MGP_AJ_T0052978.1 MGP_AJ_G0025392.1 mouse_genomes_project 2 21917504 21923782 + MGP_AJ_P0052978 Dph7 protein_coding nonsense_mediated_decay MGP_AJ_T0052979.1 MGP_AJ_G0025392.1 mouse_genomes_project 2 21917505 21926988 + MGP_AJ_P0052979 Dph7 protein_coding unknown_likely_coding MGP_AJ_T0052980.1 MGP_AJ_G0025392.1 mouse_genomes_project 2 21917522 21921747 + MGP_AJ_P0052980 Dph7 protein_coding nonsense_mediated_decay MGP_AJ_T0052981.1 MGP_AJ_G0025392.1 mouse_genomes_project 2 21917533 21921702 + MGP_AJ_P0052981 Dph7 protein_coding nonsense_mediated_decay MGP_AJ_T0052982.1 MGP_AJ_G0025392.1 mouse_genomes_project 2 21917547 21927001 + Dph7 protein_coding retained_intron MGP_AJ_T0052983.1 MGP_AJ_G0025392.1 mouse_genomes_project 2 21917554 21924530 + MGP_AJ_P0052983 Dph7 protein_coding nonsense_mediated_decay MGP_AJ_T0054017.1 MGP_AJ_G0025570.1 mouse_genomes_project 2 29019492 29081482 + MGP_AJ_P0054017 Lamc3 protein_coding protein_coding MGP_AJ_T0054018.1 MGP_AJ_G0025570.1 mouse_genomes_project 2 29019545 29082775 + MGP_AJ_P0054018 Lamc3 protein_coding protein_coding MGP_AJ_T0054019.1 MGP_AJ_G0025570.1 mouse_genomes_project 2 29058819 29059458 + Lamc3 protein_coding processed_transcript MGP_AJ_T0056358.1 MGP_AJ_G0026146.1 mouse_genomes_project 2 91940443 92047835 - MGP_AJ_P0056358 Ttc17 protein_coding protein_coding MGP_AJ_T0056359.1 MGP_AJ_G0026146.1 mouse_genomes_project 2 91940445 92047821 - MGP_AJ_P0056359 Ttc17 protein_coding protein_coding MGP_AJ_T0056360.1 MGP_AJ_G0026146.1 mouse_genomes_project 2 91967923 92047830 - MGP_AJ_P0056360 Ttc17 protein_coding protein_coding MGP_AJ_T0056361.1 MGP_AJ_G0026146.1 mouse_genomes_project 2 91995496 92003885 - Ttc17 protein_coding processed_transcript MGP_AJ_T0056362.1 MGP_AJ_G0026146.1 mouse_genomes_project 2 92020390 92046141 - Ttc17 protein_coding processed_transcript MGP_AJ_T0017877.1 MGP_AJ_G0015452.1 mouse_genomes_project 2 143766076 143805691 + BC039771 processed_transcript processed_transcript MGP_AJ_T0017878.1 MGP_AJ_G0015452.1 mouse_genomes_project 2 143791896 143844268 + BC039771 processed_transcript processed_transcript MGP_AJ_T0055803.1 MGP_AJ_G0025951.1 mouse_genomes_project 2 84164898 84165834 - MGP_AJ_P0055803 Olfr1089 protein_coding protein_coding MGP_AJ_T0055765.1 MGP_AJ_G0025915.1 mouse_genomes_project 2 83271120 83272074 + MGP_AJ_P0055765 protein_coding protein_coding MGP_AJ_T0101048.1 MGP_AJ_G0039014.1 mouse_genomes_project 2 89211190 89211301 + Snord67 snoRNA snoRNA MGP_AJ_T0054520.1 MGP_AJ_G0025664.1 mouse_genomes_project 2 34312868 34313822 - MGP_AJ_P0054520 Olfr362 protein_coding protein_coding MGP_AJ_T0101085.1 MGP_AJ_G0039051.1 mouse_genomes_project 2 156220471 156220605 - Gm25407 snoRNA snoRNA MGP_AJ_T0017724.1 MGP_AJ_G0015368.1 mouse_genomes_project 2 10357810 10413186 + Gm13270 processed_transcript antisense MGP_AJ_T0017725.1 MGP_AJ_G0015368.1 mouse_genomes_project 2 10357811 10360564 + Gm13270 processed_transcript retained_intron MGP_AJ_T0057898.1 MGP_AJ_G0026508.1 mouse_genomes_project 2 130740331 130806321 + MGP_AJ_P0057898 1110034G24Rik protein_coding protein_coding MGP_AJ_T0057899.1 MGP_AJ_G0026508.1 mouse_genomes_project 2 130743557 130805769 + MGP_AJ_P0057899 1110034G24Rik protein_coding protein_coding MGP_AJ_T0057900.1 MGP_AJ_G0026508.1 mouse_genomes_project 2 130743683 130806321 + MGP_AJ_P0057900 1110034G24Rik protein_coding protein_coding MGP_AJ_T0057901.1 MGP_AJ_G0026508.1 mouse_genomes_project 2 130752486 130805848 + 1110034G24Rik protein_coding processed_transcript MGP_AJ_T0058286.1 MGP_AJ_G0026609.1 mouse_genomes_project 2 149925888 149950923 - MGP_AJ_P0058286 Rad21l protein_coding protein_coding MGP_AJ_T0058287.1 MGP_AJ_G0026609.1 mouse_genomes_project 2 149925888 149950923 - MGP_AJ_P0058287 Rad21l protein_coding protein_coding MGP_AJ_T0056331.1 MGP_AJ_G0026141.1 mouse_genomes_project 2 91494242 91507988 - MGP_AJ_P0056331 Accsl protein_coding protein_coding MGP_AJ_T0056332.1 MGP_AJ_G0026141.1 mouse_genomes_project 2 91494243 91495900 - MGP_AJ_P0056332 Accsl protein_coding protein_coding MGP_AJ_T0056333.1 MGP_AJ_G0026141.1 mouse_genomes_project 2 91494248 91495613 - Accsl protein_coding processed_transcript MGP_AJ_T0056334.1 MGP_AJ_G0026141.1 mouse_genomes_project 2 91499898 91503650 - Accsl protein_coding processed_transcript MGP_AJ_T0056335.1 MGP_AJ_G0026141.1 mouse_genomes_project 2 91500612 91507988 - Accsl protein_coding processed_transcript MGP_AJ_T0056336.1 MGP_AJ_G0026141.1 mouse_genomes_project 2 91504708 91507903 - MGP_AJ_P0056336 Accsl protein_coding protein_coding MGP_AJ_T0056337.1 MGP_AJ_G0026141.1 mouse_genomes_project 2 91504708 91507913 - MGP_AJ_P0056337 Accsl protein_coding protein_coding MGP_AJ_T0056338.1 MGP_AJ_G0026141.1 mouse_genomes_project 2 91504860 91507524 - Accsl protein_coding processed_transcript MGP_AJ_T0013875.1 MGP_AJ_G0011970.1 mouse_genomes_project 2 166875287 166875717 - processed_pseudogene processed_pseudogene MGP_AJ_T0057520.1 MGP_AJ_G0026420.1 mouse_genomes_project 2 125321748 125323966 + MGP_AJ_P0057520 Dusp2 protein_coding protein_coding MGP_AJ_T0057521.1 MGP_AJ_G0026420.1 mouse_genomes_project 2 125322199 125323094 + Dusp2 protein_coding retained_intron MGP_AJ_T0055139.1 MGP_AJ_G0025773.1 mouse_genomes_project 2 66486743 66503026 + G6pc2 protein_coding processed_transcript MGP_AJ_T0055140.1 MGP_AJ_G0025773.1 mouse_genomes_project 2 66496217 66504184 + MGP_AJ_P0055140 G6pc2 protein_coding protein_coding MGP_AJ_T0055141.1 MGP_AJ_G0025773.1 mouse_genomes_project 2 66496244 66504184 + MGP_AJ_P0055141 G6pc2 protein_coding protein_coding MGP_AJ_T0055142.1 MGP_AJ_G0025773.1 mouse_genomes_project 2 66496274 66503178 + G6pc2 protein_coding processed_transcript MGP_AJ_T0101029.1 MGP_AJ_G0038995.1 mouse_genomes_project 2 37559112 37559238 + Gm24467 snoRNA snoRNA MGP_AJ_T0007304.1 MGP_AJ_G0005987.1 mouse_genomes_project 2 113262093 113282618 - 3110099E03Rik lincRNA lincRNA MGP_AJ_T0007305.1 MGP_AJ_G0005987.1 mouse_genomes_project 2 113263606 113299113 - 3110099E03Rik lincRNA lincRNA MGP_AJ_T0007306.1 MGP_AJ_G0005987.1 mouse_genomes_project 2 113264311 113282624 - 3110099E03Rik lincRNA lincRNA MGP_AJ_T0053257.1 MGP_AJ_G0025443.1 mouse_genomes_project 2 22703986 22707252 + MGP_AJ_P0053257 Obp2a protein_coding protein_coding MGP_AJ_T0099781.1 MGP_AJ_G0037747.1 mouse_genomes_project 2 118944189 118944295 - Gm23858 snRNA snRNA MGP_AJ_T0004137.1 MGP_AJ_G0003656.1 mouse_genomes_project 2 154048280 154051041 + Gssos1 antisense antisense MGP_AJ_T0054419.1 MGP_AJ_G0025627.1 mouse_genomes_project 2 32373940 32394473 - MGP_AJ_P0054419 Rab14 protein_coding protein_coding MGP_AJ_T0054420.1 MGP_AJ_G0025627.1 mouse_genomes_project 2 32373940 32394473 - MGP_AJ_P0054420 Rab14 protein_coding protein_coding MGP_AJ_T0054421.1 MGP_AJ_G0025627.1 mouse_genomes_project 2 32375481 32377403 - Rab14 protein_coding processed_transcript MGP_AJ_T0054422.1 MGP_AJ_G0025627.1 mouse_genomes_project 2 32376542 32377501 - Rab14 protein_coding processed_transcript MGP_AJ_T0054423.1 MGP_AJ_G0025627.1 mouse_genomes_project 2 32376955 32394325 - Rab14 protein_coding retained_intron MGP_AJ_T0054424.1 MGP_AJ_G0025627.1 mouse_genomes_project 2 32379637 32386016 - Rab14 protein_coding processed_transcript MGP_AJ_T0054425.1 MGP_AJ_G0025627.1 mouse_genomes_project 2 32381058 32384775 - Rab14 protein_coding retained_intron MGP_AJ_T0054426.1 MGP_AJ_G0025627.1 mouse_genomes_project 2 32383252 32394142 - Rab14 protein_coding processed_transcript MGP_AJ_T0054427.1 MGP_AJ_G0025627.1 mouse_genomes_project 2 32384873 32386196 - Rab14 protein_coding processed_transcript MGP_AJ_T0054428.1 MGP_AJ_G0025627.1 mouse_genomes_project 2 32389332 32394335 - Rab14 protein_coding retained_intron MGP_AJ_T0054429.1 MGP_AJ_G0025627.1 mouse_genomes_project 2 32393226 32394331 - Rab14 protein_coding processed_transcript MGP_AJ_T0001046.1 MGP_AJ_G0000977.1 mouse_genomes_project 2 11693384 11696005 + TEC TEC MGP_AJ_T0056824.1 MGP_AJ_G0026278.1 mouse_genomes_project 2 116367798 116415076 + MGP_AJ_P0056824 Bub1b protein_coding protein_coding MGP_AJ_T0056825.1 MGP_AJ_G0026278.1 mouse_genomes_project 2 116369704 116379352 + Bub1b protein_coding retained_intron MGP_AJ_T0056826.1 MGP_AJ_G0026278.1 mouse_genomes_project 2 116400712 116401946 + Bub1b protein_coding retained_intron MGP_AJ_T0056827.1 MGP_AJ_G0026278.1 mouse_genomes_project 2 116401651 116410235 + Bub1b protein_coding retained_intron MGP_AJ_T0058547.1 MGP_AJ_G0026692.1 mouse_genomes_project 2 153286346 153308281 - MGP_AJ_P0058547 Eif2s2 protein_coding protein_coding MGP_AJ_T0058548.1 MGP_AJ_G0026692.1 mouse_genomes_project 2 153286354 153308128 - MGP_AJ_P0058548 Eif2s2 protein_coding protein_coding MGP_AJ_T0058549.1 MGP_AJ_G0026692.1 mouse_genomes_project 2 153287755 153299678 - MGP_AJ_P0058549 Eif2s2 protein_coding unknown_likely_coding MGP_AJ_T0058550.1 MGP_AJ_G0026692.1 mouse_genomes_project 2 153299634 153308177 - Eif2s2 protein_coding retained_intron MGP_AJ_T0058551.1 MGP_AJ_G0026692.1 mouse_genomes_project 2 153299666 153308141 - MGP_AJ_P0058551 Eif2s2 protein_coding protein_coding MGP_AJ_T0058552.1 MGP_AJ_G0026692.1 mouse_genomes_project 2 153299669 153308154 - Eif2s2 protein_coding retained_intron MGP_AJ_T0013567.1 MGP_AJ_G0011662.1 mouse_genomes_project 2 57881495 57881742 - processed_pseudogene processed_pseudogene MGP_AJ_T0055903.1 MGP_AJ_G0026037.1 mouse_genomes_project 2 86627841 86628777 - MGP_AJ_P0055903 protein_coding protein_coding MGP_AJ_T0013622.1 MGP_AJ_G0011717.1 mouse_genomes_project 2 78319818 78320946 - processed_pseudogene processed_pseudogene MGP_AJ_T0055858.1 MGP_AJ_G0025995.1 mouse_genomes_project 2 85349410 85350355 + MGP_AJ_P0055858 Olfr1143 protein_coding protein_coding MGP_AJ_T0013570.1 MGP_AJ_G0011665.1 mouse_genomes_project 2 59018531 59019230 - processed_pseudogene processed_pseudogene MGP_AJ_T0057928.1 MGP_AJ_G0026518.1 mouse_genomes_project 2 132816491 133537385 + MGP_AJ_P0057928 Plcb1 protein_coding protein_coding MGP_AJ_T0057929.1 MGP_AJ_G0026518.1 mouse_genomes_project 2 132816507 133037571 + Plcb1 protein_coding retained_intron MGP_AJ_T0057930.1 MGP_AJ_G0026518.1 mouse_genomes_project 2 132816561 133310370 + Plcb1 protein_coding retained_intron MGP_AJ_T0057931.1 MGP_AJ_G0026518.1 mouse_genomes_project 2 132816865 133461404 + MGP_AJ_P0057931 Plcb1 protein_coding unknown_likely_coding MGP_AJ_T0057932.1 MGP_AJ_G0026518.1 mouse_genomes_project 2 133276967 133318634 + Plcb1 protein_coding processed_transcript MGP_AJ_T0057933.1 MGP_AJ_G0026518.1 mouse_genomes_project 2 133277014 133318639 + MGP_AJ_P0057933 Plcb1 protein_coding nonsense_mediated_decay MGP_AJ_T0057934.1 MGP_AJ_G0026518.1 mouse_genomes_project 2 133304981 133311259 + Plcb1 protein_coding processed_transcript MGP_AJ_T0055878.1 MGP_AJ_G0026014.1 mouse_genomes_project 2 85957525 85958473 + MGP_AJ_P0055878 Olfr1176 protein_coding protein_coding MGP_AJ_T0056842.1 MGP_AJ_G0026283.1 mouse_genomes_project 2 116547073 116552380 + MGP_AJ_P0056842 Phgr1 protein_coding protein_coding MGP_AJ_T0056843.1 MGP_AJ_G0026283.1 mouse_genomes_project 2 116547073 116552381 + MGP_AJ_P0056843 Phgr1 protein_coding protein_coding MGP_AJ_T0007149.1 MGP_AJ_G0005862.1 mouse_genomes_project 2 9781793 9791230 + Gm37565 lincRNA lincRNA MGP_AJ_T0017781.1 MGP_AJ_G0015402.1 mouse_genomes_project 2 69082480 69092339 + Gm13662 processed_transcript processed_transcript MGP_AJ_T0007298.1 MGP_AJ_G0005981.1 mouse_genomes_project 2 112027211 112028473 - Gm29234 lincRNA lincRNA MGP_AJ_T0052522.1 MGP_AJ_G0025317.1 mouse_genomes_project 2 7173227 7273602 + MGP_AJ_P0052522 Itih5 protein_coding protein_coding MGP_AJ_T0052519.1 MGP_AJ_G0025316.1 mouse_genomes_project 2 7113569 7150156 - MGP_AJ_P0052519 Itih2 protein_coding protein_coding MGP_AJ_T0052520.1 MGP_AJ_G0025316.1 mouse_genomes_project 2 7127979 7150568 - MGP_AJ_P0052520 Itih2 protein_coding protein_coding MGP_AJ_T0052521.1 MGP_AJ_G0025316.1 mouse_genomes_project 2 7145773 7150889 - MGP_AJ_P0052521 Itih2 protein_coding protein_coding MGP_AJ_T0059857.1 MGP_AJ_G0026982.1 mouse_genomes_project 2 180078257 180092387 - MGP_AJ_P0059857 Helz2 protein_coding protein_coding MGP_AJ_T0059858.1 MGP_AJ_G0026982.1 mouse_genomes_project 2 180078258 180092385 - MGP_AJ_P0059858 Helz2 protein_coding protein_coding MGP_AJ_T0059859.1 MGP_AJ_G0026982.1 mouse_genomes_project 2 180078261 180092323 - MGP_AJ_P0059859 Helz2 protein_coding protein_coding MGP_AJ_T0059860.1 MGP_AJ_G0026982.1 mouse_genomes_project 2 180078264 180086377 - Helz2 protein_coding retained_intron MGP_AJ_T0059861.1 MGP_AJ_G0026982.1 mouse_genomes_project 2 180087779 180092385 - Helz2 protein_coding retained_intron MGP_AJ_T0056691.1 MGP_AJ_G0026239.1 mouse_genomes_project 2 109749319 109750258 - MGP_AJ_P0056691 protein_coding protein_coding MGP_AJ_T0058144.1 MGP_AJ_G0026564.1 mouse_genomes_project 2 144961403 145075430 + MGP_AJ_P0058144 Kiz protein_coding protein_coding MGP_AJ_T0058145.1 MGP_AJ_G0026564.1 mouse_genomes_project 2 144961448 144994943 + MGP_AJ_P0058145 Kiz protein_coding protein_coding MGP_AJ_T0058146.1 MGP_AJ_G0026564.1 mouse_genomes_project 2 145056953 145075425 + Kiz protein_coding retained_intron MGP_AJ_T0007414.1 MGP_AJ_G0006076.1 mouse_genomes_project 2 167637330 167638138 - Gm14260 lincRNA lincRNA MGP_AJ_T0007228.1 MGP_AJ_G0005925.1 mouse_genomes_project 2 69292232 69293562 + Gm13746 lincRNA lincRNA MGP_AJ_T0059594.1 MGP_AJ_G0026920.1 mouse_genomes_project 2 171801339 171828448 - MGP_AJ_P0059594 Ctcfl protein_coding protein_coding MGP_AJ_T0055923.1 MGP_AJ_G0026053.1 mouse_genomes_project 2 86923980 86924922 - MGP_AJ_P0055923 Olfr1231 protein_coding protein_coding MGP_AJ_T0053312.1 MGP_AJ_G0025456.1 mouse_genomes_project 2 23226633 23254808 - MGP_AJ_P0053312 Qsox2 protein_coding protein_coding MGP_AJ_T0053313.1 MGP_AJ_G0025456.1 mouse_genomes_project 2 23226635 23254981 - MGP_AJ_P0053313 Qsox2 protein_coding protein_coding MGP_AJ_T0053077.1 MGP_AJ_G0025409.1 mouse_genomes_project 2 22234827 22235681 + MGP_AJ_P0053077 Tmem203 protein_coding protein_coding MGP_AJ_T0013532.1 MGP_AJ_G0011627.1 mouse_genomes_project 2 47861930 47862794 - processed_pseudogene processed_pseudogene MGP_AJ_T0017791.1 MGP_AJ_G0015412.1 mouse_genomes_project 2 85567402 85570317 - Gm13747 processed_transcript processed_transcript MGP_AJ_T0058422.1 MGP_AJ_G0026656.1 mouse_genomes_project 2 151543561 151573111 + MGP_AJ_P0058422 Pofut1 protein_coding protein_coding MGP_AJ_T0058423.1 MGP_AJ_G0026656.1 mouse_genomes_project 2 151543569 151568794 + MGP_AJ_P0058423 Pofut1 protein_coding nonsense_mediated_decay MGP_AJ_T0058424.1 MGP_AJ_G0026656.1 mouse_genomes_project 2 151543569 151568794 + MGP_AJ_P0058424 Pofut1 protein_coding nonsense_mediated_decay MGP_AJ_T0058425.1 MGP_AJ_G0026656.1 mouse_genomes_project 2 151543579 151564810 + MGP_AJ_P0058425 Pofut1 protein_coding protein_coding MGP_AJ_T0058426.1 MGP_AJ_G0026656.1 mouse_genomes_project 2 151543597 151553430 + Pofut1 protein_coding retained_intron MGP_AJ_T0058427.1 MGP_AJ_G0026656.1 mouse_genomes_project 2 151543606 151569367 + MGP_AJ_P0058427 Pofut1 protein_coding protein_coding MGP_AJ_T0058428.1 MGP_AJ_G0026656.1 mouse_genomes_project 2 151560369 151570150 + MGP_AJ_P0058428 Pofut1 protein_coding protein_coding MGP_AJ_T0058429.1 MGP_AJ_G0026656.1 mouse_genomes_project 2 151560459 151570927 + MGP_AJ_P0058429 Pofut1 protein_coding protein_coding MGP_AJ_T0057580.1 MGP_AJ_G0026437.1 mouse_genomes_project 2 126592946 126595545 + MGP_AJ_P0057580 protein_coding protein_coding MGP_AJ_T0057581.1 MGP_AJ_G0026437.1 mouse_genomes_project 2 126593009 126600015 + MGP_AJ_P0057581 protein_coding nonsense_mediated_decay MGP_AJ_T0057582.1 MGP_AJ_G0026437.1 mouse_genomes_project 2 126595865 126598522 + MGP_AJ_P0057582 protein_coding protein_coding MGP_AJ_T0003902.1 MGP_AJ_G0003486.1 mouse_genomes_project 2 10757195 10759114 + Gm37126 antisense antisense MGP_AJ_T0011523.1 MGP_AJ_G0009645.1 mouse_genomes_project 2 165275332 165275679 + Gm25265 misc_RNA misc_RNA MGP_AJ_T0057490.1 MGP_AJ_G0026413.1 mouse_genomes_project 2 125083150 125113942 - MGP_AJ_P0057490 Ncaph protein_coding protein_coding MGP_AJ_T0057491.1 MGP_AJ_G0026413.1 mouse_genomes_project 2 125083168 125094307 - Ncaph protein_coding retained_intron MGP_AJ_T0057492.1 MGP_AJ_G0026413.1 mouse_genomes_project 2 125083291 125113890 - MGP_AJ_P0057492 Ncaph protein_coding nonsense_mediated_decay MGP_AJ_T0057493.1 MGP_AJ_G0026413.1 mouse_genomes_project 2 125087919 125096570 - Ncaph protein_coding retained_intron MGP_AJ_T0057494.1 MGP_AJ_G0026413.1 mouse_genomes_project 2 125100773 125101911 - Ncaph protein_coding retained_intron MGP_AJ_T0057495.1 MGP_AJ_G0026413.1 mouse_genomes_project 2 125107595 125113885 - Ncaph protein_coding processed_transcript MGP_AJ_T0101091.1 MGP_AJ_G0039057.1 mouse_genomes_project 2 157663024 157663156 + Gm25090 snoRNA snoRNA MGP_AJ_T0057608.1 MGP_AJ_G0026445.1 mouse_genomes_project 2 127044128 127054143 - MGP_AJ_P0057608 protein_coding protein_coding MGP_AJ_T0101043.1 MGP_AJ_G0039009.1 mouse_genomes_project 2 64688652 64688784 + Gm23328 snoRNA snoRNA MGP_AJ_T0052900.1 MGP_AJ_G0025379.1 mouse_genomes_project 2 20936086 20982482 - MGP_AJ_P0052900 Hnmt protein_coding protein_coding MGP_AJ_T0052901.1 MGP_AJ_G0025379.1 mouse_genomes_project 2 20936116 20982143 - MGP_AJ_P0052901 Hnmt protein_coding protein_coding MGP_AJ_T0052902.1 MGP_AJ_G0025379.1 mouse_genomes_project 2 20936705 20981930 - MGP_AJ_P0052902 Hnmt protein_coding protein_coding MGP_AJ_T0013529.1 MGP_AJ_G0011624.1 mouse_genomes_project 2 47012452 47012930 + processed_pseudogene processed_pseudogene MGP_AJ_T0055806.1 MGP_AJ_G0025954.1 mouse_genomes_project 2 84236387 84237134 - MGP_AJ_P0055806 protein_coding protein_coding MGP_AJ_T0055693.1 MGP_AJ_G0025883.1 mouse_genomes_project 2 82127852 82129339 - MGP_AJ_P0055693 Gm19426 protein_coding protein_coding MGP_AJ_T0055108.1 MGP_AJ_G0025767.1 mouse_genomes_project 2 65485045 65753452 - MGP_AJ_P0055108 Stk39 protein_coding protein_coding MGP_AJ_T0055109.1 MGP_AJ_G0025767.1 mouse_genomes_project 2 65485048 65644502 - Stk39 protein_coding retained_intron MGP_AJ_T0055110.1 MGP_AJ_G0025767.1 mouse_genomes_project 2 65486340 65497994 - Stk39 protein_coding processed_transcript MGP_AJ_T0055111.1 MGP_AJ_G0025767.1 mouse_genomes_project 2 65486340 65527620 - Stk39 protein_coding processed_transcript MGP_AJ_T0055112.1 MGP_AJ_G0025767.1 mouse_genomes_project 2 65486340 65527625 - Stk39 protein_coding processed_transcript MGP_AJ_T0055113.1 MGP_AJ_G0025767.1 mouse_genomes_project 2 65486347 65527598 - Stk39 protein_coding processed_transcript MGP_AJ_T0055114.1 MGP_AJ_G0025767.1 mouse_genomes_project 2 65539629 65753124 - Stk39 protein_coding retained_intron MGP_AJ_T0055115.1 MGP_AJ_G0025767.1 mouse_genomes_project 2 65636965 65665132 - Stk39 protein_coding processed_transcript MGP_AJ_T0055081.1 MGP_AJ_G0025759.1 mouse_genomes_project 2 63460145 63533056 - MGP_AJ_P0055081 Ttc21b protein_coding protein_coding MGP_AJ_T0055082.1 MGP_AJ_G0025759.1 mouse_genomes_project 2 63494738 63511728 - Ttc21b protein_coding retained_intron MGP_AJ_T0055083.1 MGP_AJ_G0025759.1 mouse_genomes_project 2 63507839 63525932 - Ttc21b protein_coding retained_intron MGP_AJ_T0004090.1 MGP_AJ_G0003621.1 mouse_genomes_project 2 129611609 129613175 + Gm14285 antisense antisense MGP_AJ_T0054862.1 MGP_AJ_G0025726.1 mouse_genomes_project 2 55784821 55785784 + MGP_AJ_P0054862 Gm17409 protein_coding protein_coding MGP_AJ_T0059825.1 MGP_AJ_G0026976.1 mouse_genomes_project 2 179930413 179989958 - MGP_AJ_P0059825 Kcnq2 protein_coding protein_coding MGP_AJ_T0059826.1 MGP_AJ_G0026976.1 mouse_genomes_project 2 179930413 179990044 - MGP_AJ_P0059826 Kcnq2 protein_coding protein_coding MGP_AJ_T0059827.1 MGP_AJ_G0026976.1 mouse_genomes_project 2 179930420 179989871 - MGP_AJ_P0059827 Kcnq2 protein_coding protein_coding MGP_AJ_T0059828.1 MGP_AJ_G0026976.1 mouse_genomes_project 2 179930422 179989921 - MGP_AJ_P0059828 Kcnq2 protein_coding protein_coding MGP_AJ_T0059829.1 MGP_AJ_G0026976.1 mouse_genomes_project 2 179930422 179989921 - MGP_AJ_P0059829 Kcnq2 protein_coding protein_coding MGP_AJ_T0059830.1 MGP_AJ_G0026976.1 mouse_genomes_project 2 179930422 179989921 - MGP_AJ_P0059830 Kcnq2 protein_coding protein_coding MGP_AJ_T0059831.1 MGP_AJ_G0026976.1 mouse_genomes_project 2 179930422 179989921 - MGP_AJ_P0059831 Kcnq2 protein_coding protein_coding MGP_AJ_T0059832.1 MGP_AJ_G0026976.1 mouse_genomes_project 2 179934407 179990005 - MGP_AJ_P0059832 Kcnq2 protein_coding protein_coding MGP_AJ_T0059833.1 MGP_AJ_G0026976.1 mouse_genomes_project 2 179935325 179969487 - MGP_AJ_P0059833 Kcnq2 protein_coding protein_coding MGP_AJ_T0059834.1 MGP_AJ_G0026976.1 mouse_genomes_project 2 179935329 179989666 - MGP_AJ_P0059834 Kcnq2 protein_coding protein_coding MGP_AJ_T0059835.1 MGP_AJ_G0026976.1 mouse_genomes_project 2 179935725 179989875 - MGP_AJ_P0059835 Kcnq2 protein_coding protein_coding MGP_AJ_T0059836.1 MGP_AJ_G0026976.1 mouse_genomes_project 2 179937229 179964600 - MGP_AJ_P0059836 Kcnq2 protein_coding protein_coding MGP_AJ_T0059837.1 MGP_AJ_G0026976.1 mouse_genomes_project 2 179937279 179950267 - Kcnq2 protein_coding processed_transcript MGP_AJ_T0059838.1 MGP_AJ_G0026976.1 mouse_genomes_project 2 179939408 179955644 - Kcnq2 protein_coding retained_intron MGP_AJ_T0059839.1 MGP_AJ_G0026976.1 mouse_genomes_project 2 179940804 179989921 - Kcnq2 protein_coding retained_intron MGP_AJ_T0059840.1 MGP_AJ_G0026976.1 mouse_genomes_project 2 179951086 179989921 - Kcnq2 protein_coding retained_intron MGP_AJ_T0059841.1 MGP_AJ_G0026976.1 mouse_genomes_project 2 179951311 179989921 - Kcnq2 protein_coding retained_intron MGP_AJ_T0059842.1 MGP_AJ_G0026976.1 mouse_genomes_project 2 179963287 179989921 - Kcnq2 protein_coding processed_transcript MGP_AJ_T0059843.1 MGP_AJ_G0026976.1 mouse_genomes_project 2 179963287 179989987 - Kcnq2 protein_coding retained_intron MGP_AJ_T0059844.1 MGP_AJ_G0026976.1 mouse_genomes_project 2 179963287 179989921 - Kcnq2 protein_coding retained_intron MGP_AJ_T0059845.1 MGP_AJ_G0026976.1 mouse_genomes_project 2 179963287 179989921 - Kcnq2 protein_coding retained_intron MGP_AJ_T0013563.1 MGP_AJ_G0011658.1 mouse_genomes_project 2 56820806 56821344 - processed_pseudogene processed_pseudogene MGP_AJ_T0017837.1 MGP_AJ_G0015434.1 mouse_genomes_project 2 115623760 115872858 - Gm13986 processed_transcript processed_transcript MGP_AJ_T0017838.1 MGP_AJ_G0015434.1 mouse_genomes_project 2 115831624 115872747 - Gm13986 processed_transcript processed_transcript MGP_AJ_T0017807.1 MGP_AJ_G0015422.1 mouse_genomes_project 2 90668535 90673964 + 4631405J19Rik processed_transcript processed_transcript MGP_AJ_T0017808.1 MGP_AJ_G0015422.1 mouse_genomes_project 2 90668535 90673964 + 4631405J19Rik processed_transcript processed_transcript MGP_AJ_T0017809.1 MGP_AJ_G0015422.1 mouse_genomes_project 2 90669927 90673991 + 4631405J19Rik processed_transcript processed_transcript MGP_AJ_T0017810.1 MGP_AJ_G0015422.1 mouse_genomes_project 2 90669928 90672264 + 4631405J19Rik processed_transcript processed_transcript MGP_AJ_T0017811.1 MGP_AJ_G0015422.1 mouse_genomes_project 2 90671023 90685882 + 4631405J19Rik processed_transcript processed_transcript MGP_AJ_T0053248.1 MGP_AJ_G0025440.1 mouse_genomes_project 2 22650547 22654097 + MGP_AJ_P0053248 Lcn5 protein_coding protein_coding MGP_AJ_T0053249.1 MGP_AJ_G0025440.1 mouse_genomes_project 2 22650550 22654241 + MGP_AJ_P0053249 Lcn5 protein_coding protein_coding MGP_AJ_T0053250.1 MGP_AJ_G0025440.1 mouse_genomes_project 2 22650550 22654573 + MGP_AJ_P0053250 Lcn5 protein_coding protein_coding MGP_AJ_T0053251.1 MGP_AJ_G0025440.1 mouse_genomes_project 2 22653517 22654237 + Lcn5 protein_coding processed_transcript MGP_AJ_T0011516.1 MGP_AJ_G0009638.1 mouse_genomes_project 2 143570978 143571303 - Gm22390 misc_RNA misc_RNA MGP_AJ_T0007363.1 MGP_AJ_G0006032.1 mouse_genomes_project 2 148927024 148927662 - Gm28450 lincRNA lincRNA MGP_AJ_T0056920.1 MGP_AJ_G0026302.1 mouse_genomes_project 2 117101590 117111699 + MGP_AJ_P0056920 Dll4 protein_coding protein_coding MGP_AJ_T0056921.1 MGP_AJ_G0026302.1 mouse_genomes_project 2 117104343 117107945 + Dll4 protein_coding processed_transcript MGP_AJ_T0001024.1 MGP_AJ_G0000955.1 mouse_genomes_project 2 8204131 8205046 + TEC TEC MGP_AJ_T0001088.1 MGP_AJ_G0001017.1 mouse_genomes_project 2 66288970 66292743 + TEC TEC MGP_AJ_T0053948.1 MGP_AJ_G0025559.1 mouse_genomes_project 2 28135582 28253699 - MGP_AJ_P0053948 Fnbp1 protein_coding protein_coding MGP_AJ_T0053949.1 MGP_AJ_G0025559.1 mouse_genomes_project 2 28135583 28206373 - MGP_AJ_P0053949 Fnbp1 protein_coding protein_coding MGP_AJ_T0053950.1 MGP_AJ_G0025559.1 mouse_genomes_project 2 28135583 28253905 - MGP_AJ_P0053950 Fnbp1 protein_coding protein_coding MGP_AJ_T0053951.1 MGP_AJ_G0025559.1 mouse_genomes_project 2 28135584 28253893 - MGP_AJ_P0053951 Fnbp1 protein_coding protein_coding MGP_AJ_T0053952.1 MGP_AJ_G0025559.1 mouse_genomes_project 2 28136171 28253854 - MGP_AJ_P0053952 Fnbp1 protein_coding protein_coding MGP_AJ_T0053953.1 MGP_AJ_G0025559.1 mouse_genomes_project 2 28137571 28206373 - Fnbp1 protein_coding processed_transcript MGP_AJ_T0053954.1 MGP_AJ_G0025559.1 mouse_genomes_project 2 28142081 28215889 - MGP_AJ_P0053954 Fnbp1 protein_coding protein_coding MGP_AJ_T0053955.1 MGP_AJ_G0025559.1 mouse_genomes_project 2 28142386 28253699 - MGP_AJ_P0053955 Fnbp1 protein_coding protein_coding MGP_AJ_T0053956.1 MGP_AJ_G0025559.1 mouse_genomes_project 2 28142397 28253699 - MGP_AJ_P0053956 Fnbp1 protein_coding protein_coding MGP_AJ_T0053957.1 MGP_AJ_G0025559.1 mouse_genomes_project 2 28142397 28253699 - MGP_AJ_P0053957 Fnbp1 protein_coding protein_coding MGP_AJ_T0053958.1 MGP_AJ_G0025559.1 mouse_genomes_project 2 28142397 28253699 - MGP_AJ_P0053958 Fnbp1 protein_coding protein_coding MGP_AJ_T0053959.1 MGP_AJ_G0025559.1 mouse_genomes_project 2 28142478 28164825 - MGP_AJ_P0053959 Fnbp1 protein_coding protein_coding MGP_AJ_T0053960.1 MGP_AJ_G0025559.1 mouse_genomes_project 2 28162615 28253836 - MGP_AJ_P0053960 Fnbp1 protein_coding protein_coding MGP_AJ_T0053961.1 MGP_AJ_G0025559.1 mouse_genomes_project 2 28164947 28253852 - MGP_AJ_P0053961 Fnbp1 protein_coding protein_coding MGP_AJ_T0053962.1 MGP_AJ_G0025559.1 mouse_genomes_project 2 28168300 28227188 - MGP_AJ_P0053962 Fnbp1 protein_coding protein_coding MGP_AJ_T0053963.1 MGP_AJ_G0025559.1 mouse_genomes_project 2 28205963 28215987 - Fnbp1 protein_coding processed_transcript MGP_AJ_T0098650.1 MGP_AJ_G0036634.1 mouse_genomes_project 2 78996910 78997018 - Gm23900 rRNA rRNA MGP_AJ_T0055864.1 MGP_AJ_G0026001.1 mouse_genomes_project 2 85448318 85449344 - MGP_AJ_P0055864 Olfr1154 protein_coding protein_coding MGP_AJ_T0052404.1 MGP_AJ_G0025296.1 mouse_genomes_project 2 1970415 1994195 - MGP_AJ_P0052404 Mcm10 protein_coding protein_coding MGP_AJ_T0052405.1 MGP_AJ_G0025296.1 mouse_genomes_project 2 1971425 1976864 - Mcm10 protein_coding retained_intron MGP_AJ_T0052406.1 MGP_AJ_G0025296.1 mouse_genomes_project 2 1971425 1982522 - Mcm10 protein_coding retained_intron MGP_AJ_T0052407.1 MGP_AJ_G0025296.1 mouse_genomes_project 2 1971425 1994642 - MGP_AJ_P0052407 Mcm10 protein_coding protein_coding MGP_AJ_T0052408.1 MGP_AJ_G0025296.1 mouse_genomes_project 2 1971732 1974227 - Mcm10 protein_coding retained_intron MGP_AJ_T0052409.1 MGP_AJ_G0025296.1 mouse_genomes_project 2 1971961 1975808 - Mcm10 protein_coding retained_intron MGP_AJ_T0052410.1 MGP_AJ_G0025296.1 mouse_genomes_project 2 1979984 1986063 - Mcm10 protein_coding retained_intron MGP_AJ_T0052411.1 MGP_AJ_G0025296.1 mouse_genomes_project 2 1985005 1986283 - Mcm10 protein_coding retained_intron MGP_AJ_T0052412.1 MGP_AJ_G0025296.1 mouse_genomes_project 2 1987474 1994604 - Mcm10 protein_coding processed_transcript MGP_AJ_T0052413.1 MGP_AJ_G0025296.1 mouse_genomes_project 2 1987961 1994566 - Mcm10 protein_coding retained_intron MGP_AJ_T0101023.1 MGP_AJ_G0038989.1 mouse_genomes_project 2 29366028 29366113 + Gm25632 snoRNA snoRNA MGP_AJ_T0058094.1 MGP_AJ_G0026556.1 mouse_genomes_project 2 142912878 142913638 + MGP_AJ_P0058094 Scp2d1 protein_coding protein_coding MGP_AJ_T0003934.1 MGP_AJ_G0003509.1 mouse_genomes_project 2 24168844 24187505 - Dbhos antisense antisense MGP_AJ_T0057463.1 MGP_AJ_G0026409.1 mouse_genomes_project 2 124762004 124847486 - MGP_AJ_P0057463 Trpm7 protein_coding protein_coding MGP_AJ_T0057464.1 MGP_AJ_G0026409.1 mouse_genomes_project 2 124762010 124847373 - MGP_AJ_P0057464 Trpm7 protein_coding protein_coding MGP_AJ_T0057465.1 MGP_AJ_G0026409.1 mouse_genomes_project 2 124762023 124765976 - Trpm7 protein_coding retained_intron MGP_AJ_T0057466.1 MGP_AJ_G0026409.1 mouse_genomes_project 2 124763266 124773073 - Trpm7 protein_coding retained_intron MGP_AJ_T0057467.1 MGP_AJ_G0026409.1 mouse_genomes_project 2 124763337 124768294 - MGP_AJ_P0057467 Trpm7 protein_coding protein_coding MGP_AJ_T0057468.1 MGP_AJ_G0026409.1 mouse_genomes_project 2 124767441 124768277 - Trpm7 protein_coding retained_intron MGP_AJ_T0057469.1 MGP_AJ_G0026409.1 mouse_genomes_project 2 124767730 124775579 - Trpm7 protein_coding processed_transcript MGP_AJ_T0057470.1 MGP_AJ_G0026409.1 mouse_genomes_project 2 124784019 124788616 - Trpm7 protein_coding retained_intron MGP_AJ_T0057471.1 MGP_AJ_G0026409.1 mouse_genomes_project 2 124800283 124804941 - Trpm7 protein_coding retained_intron MGP_AJ_T0057472.1 MGP_AJ_G0026409.1 mouse_genomes_project 2 124801856 124847442 - Trpm7 protein_coding retained_intron MGP_AJ_T0057473.1 MGP_AJ_G0026409.1 mouse_genomes_project 2 124801859 124805280 - Trpm7 protein_coding retained_intron MGP_AJ_T0055977.1 MGP_AJ_G0026088.1 mouse_genomes_project 2 87838136 87838971 - MGP_AJ_P0055977 Olfr142 protein_coding protein_coding MGP_AJ_T0058885.1 MGP_AJ_G0026747.1 mouse_genomes_project 2 155877546 155908418 + MGP_AJ_P0058885 Manbal protein_coding protein_coding MGP_AJ_T0007400.1 MGP_AJ_G0006065.1 mouse_genomes_project 2 165091211 165096994 - lincRNA lincRNA MGP_AJ_T0058193.1 MGP_AJ_G0026587.1 mouse_genomes_project 2 147562454 147565953 + MGP_AJ_P0058193 Cst10 protein_coding protein_coding MGP_AJ_T0058194.1 MGP_AJ_G0026587.1 mouse_genomes_project 2 147562646 147565953 + MGP_AJ_P0058194 Cst10 protein_coding protein_coding MGP_AJ_T0058195.1 MGP_AJ_G0026587.1 mouse_genomes_project 2 147562730 147565953 + MGP_AJ_P0058195 Cst10 protein_coding protein_coding MGP_AJ_T0099761.1 MGP_AJ_G0037727.1 mouse_genomes_project 2 45705982 45706102 - Gm25338 snRNA snRNA MGP_AJ_T0007175.1 MGP_AJ_G0005880.1 mouse_genomes_project 2 27623284 27628879 + Gm14487 lincRNA lincRNA MGP_AJ_T0013485.1 MGP_AJ_G0011580.1 mouse_genomes_project 2 30823907 30824317 - processed_pseudogene processed_pseudogene MGP_AJ_T0004131.1 MGP_AJ_G0003651.1 mouse_genomes_project 2 151291393 151293055 - Gm14199 antisense antisense MGP_AJ_T0055948.1 MGP_AJ_G0026070.1 mouse_genomes_project 2 87413261 87418689 + MGP_AJ_P0055948 Olfr1255 protein_coding protein_coding MGP_AJ_T0017873.1 MGP_AJ_G0015450.1 mouse_genomes_project 2 129871296 129898952 - 5330413P13Rik processed_transcript processed_transcript MGP_AJ_T0017874.1 MGP_AJ_G0015450.1 mouse_genomes_project 2 129894931 129898957 - 5330413P13Rik processed_transcript processed_transcript MGP_AJ_T0017875.1 MGP_AJ_G0015450.1 mouse_genomes_project 2 129895148 129898920 - 5330413P13Rik processed_transcript processed_transcript MGP_AJ_T0055845.1 MGP_AJ_G0025984.1 mouse_genomes_project 2 85129094 85130155 + MGP_AJ_P0055845 Olfr1129 protein_coding protein_coding MGP_AJ_T0054844.1 MGP_AJ_G0025722.1 mouse_genomes_project 2 55378570 55386365 - MGP_AJ_P0054844 Ermn protein_coding protein_coding MGP_AJ_T0013434.1 MGP_AJ_G0011529.1 mouse_genomes_project 2 12463713 12464683 + processed_pseudogene processed_pseudogene MGP_AJ_T0053198.1 MGP_AJ_G0025429.1 mouse_genomes_project 2 22486482 22491229 + MGP_AJ_P0053198 Fbxw5 protein_coding protein_coding MGP_AJ_T0053199.1 MGP_AJ_G0025429.1 mouse_genomes_project 2 22486551 22489286 + Fbxw5 protein_coding processed_transcript MGP_AJ_T0053200.1 MGP_AJ_G0025429.1 mouse_genomes_project 2 22486553 22489549 + Fbxw5 protein_coding processed_transcript MGP_AJ_T0053201.1 MGP_AJ_G0025429.1 mouse_genomes_project 2 22486594 22488922 + Fbxw5 protein_coding processed_transcript MGP_AJ_T0053202.1 MGP_AJ_G0025429.1 mouse_genomes_project 2 22486614 22489340 + Fbxw5 protein_coding processed_transcript MGP_AJ_T0053203.1 MGP_AJ_G0025429.1 mouse_genomes_project 2 22488293 22489320 + Fbxw5 protein_coding processed_transcript MGP_AJ_T0053204.1 MGP_AJ_G0025429.1 mouse_genomes_project 2 22488773 22489536 + Fbxw5 protein_coding processed_transcript MGP_AJ_T0053205.1 MGP_AJ_G0025429.1 mouse_genomes_project 2 22488961 22490570 + MGP_AJ_P0053205 Fbxw5 protein_coding protein_coding MGP_AJ_T0053206.1 MGP_AJ_G0025429.1 mouse_genomes_project 2 22489642 22490681 + Fbxw5 protein_coding processed_transcript MGP_AJ_T0056670.1 MGP_AJ_G0026218.1 mouse_genomes_project 2 108948420 108949644 + MGP_AJ_P0056670 protein_coding protein_coding MGP_AJ_T0101061.1 MGP_AJ_G0039027.1 mouse_genomes_project 2 118813266 118813480 + Gm22865 snoRNA snoRNA MGP_AJ_T0101082.1 MGP_AJ_G0039048.1 mouse_genomes_project 2 149445080 149445216 + Gm23261 snoRNA snoRNA MGP_AJ_T0013669.1 MGP_AJ_G0011764.1 mouse_genomes_project 2 91578850 91579430 - processed_pseudogene processed_pseudogene MGP_AJ_T0007325.1 MGP_AJ_G0006001.1 mouse_genomes_project 2 122166397 122171408 - 4930583P06Rik lincRNA lincRNA MGP_AJ_T0010380.1 MGP_AJ_G0008502.1 mouse_genomes_project 2 22022957 22023020 + Mir7664 miRNA miRNA MGP_AJ_T0013769.1 MGP_AJ_G0011864.1 mouse_genomes_project 2 130731890 130732890 + processed_pseudogene processed_pseudogene MGP_AJ_T0007386.1 MGP_AJ_G0006052.1 mouse_genomes_project 2 161196765 161197840 + Gm14246 lincRNA lincRNA MGP_AJ_T0056409.1 MGP_AJ_G0026159.1 mouse_genomes_project 2 100287052 100419701 + MGP_AJ_P0056409 Slc1a2 protein_coding protein_coding MGP_AJ_T0056410.1 MGP_AJ_G0026159.1 mouse_genomes_project 2 100287615 100364917 + Slc1a2 protein_coding processed_transcript MGP_AJ_T0056411.1 MGP_AJ_G0026159.1 mouse_genomes_project 2 100287650 100364914 + Slc1a2 protein_coding processed_transcript MGP_AJ_T0056412.1 MGP_AJ_G0026159.1 mouse_genomes_project 2 100287673 100407045 + MGP_AJ_P0056412 Slc1a2 protein_coding protein_coding MGP_AJ_T0056413.1 MGP_AJ_G0026159.1 mouse_genomes_project 2 100303482 100364914 + Slc1a2 protein_coding processed_transcript MGP_AJ_T0056414.1 MGP_AJ_G0026159.1 mouse_genomes_project 2 100332445 100368831 + MGP_AJ_P0056414 Slc1a2 protein_coding protein_coding MGP_AJ_T0056415.1 MGP_AJ_G0026159.1 mouse_genomes_project 2 100332527 100410690 + MGP_AJ_P0056415 Slc1a2 protein_coding protein_coding MGP_AJ_T0056416.1 MGP_AJ_G0026159.1 mouse_genomes_project 2 100332527 100407054 + MGP_AJ_P0056416 Slc1a2 protein_coding protein_coding MGP_AJ_T0056417.1 MGP_AJ_G0026159.1 mouse_genomes_project 2 100349102 100364910 + Slc1a2 protein_coding processed_transcript MGP_AJ_T0056418.1 MGP_AJ_G0026159.1 mouse_genomes_project 2 100384908 100406532 + MGP_AJ_P0056418 Slc1a2 protein_coding protein_coding MGP_AJ_T0056419.1 MGP_AJ_G0026159.1 mouse_genomes_project 2 100390172 100410504 + MGP_AJ_P0056419 Slc1a2 protein_coding protein_coding MGP_AJ_T0010476.1 MGP_AJ_G0008598.1 mouse_genomes_project 2 161632981 161633106 + Gm22174 miRNA miRNA MGP_AJ_T0058976.1 MGP_AJ_G0026767.1 mouse_genomes_project 2 157316566 157379517 + MGP_AJ_P0058976 Dhx35 protein_coding protein_coding MGP_AJ_T0058977.1 MGP_AJ_G0026767.1 mouse_genomes_project 2 157316566 157379517 + MGP_AJ_P0058977 Dhx35 protein_coding protein_coding MGP_AJ_T0058978.1 MGP_AJ_G0026767.1 mouse_genomes_project 2 157316621 157379517 + Dhx35 protein_coding processed_transcript MGP_AJ_T0058979.1 MGP_AJ_G0026767.1 mouse_genomes_project 2 157316624 157368327 + Dhx35 protein_coding retained_intron MGP_AJ_T0058980.1 MGP_AJ_G0026767.1 mouse_genomes_project 2 157316644 157350989 + MGP_AJ_P0058980 Dhx35 protein_coding protein_coding MGP_AJ_T0058981.1 MGP_AJ_G0026767.1 mouse_genomes_project 2 157316650 157339808 + Dhx35 protein_coding processed_transcript MGP_AJ_T0058982.1 MGP_AJ_G0026767.1 mouse_genomes_project 2 157317682 157323272 + Dhx35 protein_coding processed_transcript MGP_AJ_T0058983.1 MGP_AJ_G0026767.1 mouse_genomes_project 2 157348820 157356351 + Dhx35 protein_coding processed_transcript MGP_AJ_T0058984.1 MGP_AJ_G0026767.1 mouse_genomes_project 2 157372001 157378671 + Dhx35 protein_coding processed_transcript MGP_AJ_T0057985.1 MGP_AJ_G0026530.1 mouse_genomes_project 2 137937284 138163480 - MGP_AJ_P0057985 Tasp1 protein_coding protein_coding MGP_AJ_T0057986.1 MGP_AJ_G0026530.1 mouse_genomes_project 2 137937284 138163455 - MGP_AJ_P0057986 Tasp1 protein_coding protein_coding MGP_AJ_T0057987.1 MGP_AJ_G0026530.1 mouse_genomes_project 2 137937284 138163500 - MGP_AJ_P0057987 Tasp1 protein_coding protein_coding MGP_AJ_T0057988.1 MGP_AJ_G0026530.1 mouse_genomes_project 2 138072220 138137952 - Tasp1 protein_coding retained_intron MGP_AJ_T0013871.1 MGP_AJ_G0011966.1 mouse_genomes_project 2 165700770 165700968 + processed_pseudogene processed_pseudogene MGP_AJ_T0052388.1 MGP_AJ_G0025292.1 mouse_genomes_project 2 1697200 1780064 + MGP_AJ_P0052388 Bend7 protein_coding protein_coding MGP_AJ_T0052389.1 MGP_AJ_G0025292.1 mouse_genomes_project 2 1697203 1768430 + MGP_AJ_P0052389 Bend7 protein_coding protein_coding MGP_AJ_T0052390.1 MGP_AJ_G0025292.1 mouse_genomes_project 2 1697514 1780426 + MGP_AJ_P0052390 Bend7 protein_coding protein_coding MGP_AJ_T0052391.1 MGP_AJ_G0025292.1 mouse_genomes_project 2 1731588 1781643 + Bend7 protein_coding processed_transcript MGP_AJ_T0010450.1 MGP_AJ_G0008572.1 mouse_genomes_project 2 119893902 119893970 + miRNA miRNA MGP_AJ_T0013640.1 MGP_AJ_G0011735.1 mouse_genomes_project 2 84576252 84576787 - processed_pseudogene processed_pseudogene MGP_AJ_T0057445.1 MGP_AJ_G0026405.1 mouse_genomes_project 2 124591094 124639532 - MGP_AJ_P0057445 Gabpb1 protein_coding protein_coding MGP_AJ_T0057446.1 MGP_AJ_G0026405.1 mouse_genomes_project 2 124592565 124639466 - MGP_AJ_P0057446 Gabpb1 protein_coding protein_coding MGP_AJ_T0057447.1 MGP_AJ_G0026405.1 mouse_genomes_project 2 124592567 124639508 - MGP_AJ_P0057447 Gabpb1 protein_coding protein_coding MGP_AJ_T0057448.1 MGP_AJ_G0026405.1 mouse_genomes_project 2 124602649 124640300 - MGP_AJ_P0057448 Gabpb1 protein_coding protein_coding MGP_AJ_T0057449.1 MGP_AJ_G0026405.1 mouse_genomes_project 2 124603034 124639450 - MGP_AJ_P0057449 Gabpb1 protein_coding protein_coding MGP_AJ_T0057450.1 MGP_AJ_G0026405.1 mouse_genomes_project 2 124611760 124639556 - MGP_AJ_P0057450 Gabpb1 protein_coding protein_coding MGP_AJ_T0057451.1 MGP_AJ_G0026405.1 mouse_genomes_project 2 124616309 124639303 - Gabpb1 protein_coding processed_transcript MGP_AJ_T0057452.1 MGP_AJ_G0026405.1 mouse_genomes_project 2 124617598 124639316 - MGP_AJ_P0057452 Gabpb1 protein_coding protein_coding MGP_AJ_T0057453.1 MGP_AJ_G0026405.1 mouse_genomes_project 2 124617675 124627155 - MGP_AJ_P0057453 Gabpb1 protein_coding protein_coding MGP_AJ_T0053987.1 MGP_AJ_G0025564.1 mouse_genomes_project 2 28690202 28735720 + MGP_AJ_P0053987 Fubp3 protein_coding protein_coding MGP_AJ_T0053988.1 MGP_AJ_G0025564.1 mouse_genomes_project 2 28690344 28713354 + MGP_AJ_P0053988 Fubp3 protein_coding protein_coding MGP_AJ_T0053989.1 MGP_AJ_G0025564.1 mouse_genomes_project 2 28690345 28702455 + Fubp3 protein_coding retained_intron MGP_AJ_T0053990.1 MGP_AJ_G0025564.1 mouse_genomes_project 2 28690367 28716645 + MGP_AJ_P0053990 Fubp3 protein_coding protein_coding MGP_AJ_T0053991.1 MGP_AJ_G0025564.1 mouse_genomes_project 2 28690370 28735713 + MGP_AJ_P0053991 Fubp3 protein_coding protein_coding MGP_AJ_T0053992.1 MGP_AJ_G0025564.1 mouse_genomes_project 2 28690380 28716631 + MGP_AJ_P0053992 Fubp3 protein_coding nonsense_mediated_decay MGP_AJ_T0053993.1 MGP_AJ_G0025564.1 mouse_genomes_project 2 28721353 28731301 + MGP_AJ_P0053993 Fubp3 protein_coding nonsense_mediated_decay MGP_AJ_T0053994.1 MGP_AJ_G0025564.1 mouse_genomes_project 2 28722788 28734126 + MGP_AJ_P0053994 Fubp3 protein_coding protein_coding MGP_AJ_T0053995.1 MGP_AJ_G0025564.1 mouse_genomes_project 2 28730724 28734910 + MGP_AJ_P0053995 Fubp3 protein_coding protein_coding MGP_AJ_T0053996.1 MGP_AJ_G0025564.1 mouse_genomes_project 2 28732954 28735712 + MGP_AJ_P0053996 Fubp3 protein_coding protein_coding MGP_AJ_T0053997.1 MGP_AJ_G0025564.1 mouse_genomes_project 2 28733372 28735714 + Fubp3 protein_coding retained_intron MGP_AJ_T0001058.1 MGP_AJ_G0000989.1 mouse_genomes_project 2 21842013 21846497 - TEC TEC MGP_AJ_T0053908.1 MGP_AJ_G0025552.1 mouse_genomes_project 2 27924281 27929439 - Asb6 protein_coding retained_intron MGP_AJ_T0053909.1 MGP_AJ_G0025552.1 mouse_genomes_project 2 27924281 27931518 - MGP_AJ_P0053909 Asb6 protein_coding protein_coding MGP_AJ_T0053910.1 MGP_AJ_G0025552.1 mouse_genomes_project 2 27925654 27929450 - MGP_AJ_P0053910 Asb6 protein_coding nonsense_mediated_decay MGP_AJ_T0053911.1 MGP_AJ_G0025552.1 mouse_genomes_project 2 27926340 27929476 - Asb6 protein_coding retained_intron MGP_AJ_T0053912.1 MGP_AJ_G0025552.1 mouse_genomes_project 2 27926644 27928679 - Asb6 protein_coding retained_intron MGP_AJ_T0056916.1 MGP_AJ_G0026300.1 mouse_genomes_project 2 117044982 117047054 - MGP_AJ_P0056916 Rhov protein_coding protein_coding MGP_AJ_T0055123.1 MGP_AJ_G0025770.1 mouse_genomes_project 2 66133836 66384945 + MGP_AJ_P0055123 Cers6 protein_coding protein_coding MGP_AJ_T0055124.1 MGP_AJ_G0025770.1 mouse_genomes_project 2 66133837 66135120 + Cers6 protein_coding retained_intron MGP_AJ_T0055125.1 MGP_AJ_G0025770.1 mouse_genomes_project 2 66133845 66342470 + Cers6 protein_coding retained_intron MGP_AJ_T0055126.1 MGP_AJ_G0025770.1 mouse_genomes_project 2 66133865 66202053 + Cers6 protein_coding retained_intron MGP_AJ_T0055127.1 MGP_AJ_G0025770.1 mouse_genomes_project 2 66133981 66379434 + MGP_AJ_P0055127 Cers6 protein_coding protein_coding MGP_AJ_T0055128.1 MGP_AJ_G0025770.1 mouse_genomes_project 2 66215072 66321836 + Cers6 protein_coding retained_intron MGP_AJ_T0055129.1 MGP_AJ_G0025770.1 mouse_genomes_project 2 66229200 66322192 + Cers6 protein_coding retained_intron MGP_AJ_T0013638.1 MGP_AJ_G0011733.1 mouse_genomes_project 2 83201019 83201215 - processed_pseudogene processed_pseudogene MGP_AJ_T0013726.1 MGP_AJ_G0011821.1 mouse_genomes_project 2 111127506 111128031 + processed_pseudogene processed_pseudogene MGP_AJ_T0059920.1 MGP_AJ_G0026992.1 mouse_genomes_project 2 180348140 180366201 + MGP_AJ_P0059920 Tpd52l2 protein_coding nonsense_mediated_decay MGP_AJ_T0059921.1 MGP_AJ_G0026992.1 mouse_genomes_project 2 180348162 180359233 + Tpd52l2 protein_coding processed_transcript MGP_AJ_T0059922.1 MGP_AJ_G0026992.1 mouse_genomes_project 2 180348163 180369052 + MGP_AJ_P0059922 Tpd52l2 protein_coding protein_coding MGP_AJ_T0059923.1 MGP_AJ_G0026992.1 mouse_genomes_project 2 180348179 180368457 + MGP_AJ_P0059923 Tpd52l2 protein_coding protein_coding MGP_AJ_T0059924.1 MGP_AJ_G0026992.1 mouse_genomes_project 2 180348181 180366212 + MGP_AJ_P0059924 Tpd52l2 protein_coding protein_coding MGP_AJ_T0059925.1 MGP_AJ_G0026992.1 mouse_genomes_project 2 180348185 180369048 + MGP_AJ_P0059925 Tpd52l2 protein_coding protein_coding MGP_AJ_T0059926.1 MGP_AJ_G0026992.1 mouse_genomes_project 2 180348197 180367342 + MGP_AJ_P0059926 Tpd52l2 protein_coding protein_coding MGP_AJ_T0059927.1 MGP_AJ_G0026992.1 mouse_genomes_project 2 180348227 180353556 + Tpd52l2 protein_coding retained_intron MGP_AJ_T0059928.1 MGP_AJ_G0026992.1 mouse_genomes_project 2 180348229 180366473 + MGP_AJ_P0059928 Tpd52l2 protein_coding protein_coding MGP_AJ_T0059929.1 MGP_AJ_G0026992.1 mouse_genomes_project 2 180350846 180364141 + MGP_AJ_P0059929 Tpd52l2 protein_coding protein_coding MGP_AJ_T0059930.1 MGP_AJ_G0026992.1 mouse_genomes_project 2 180350867 180354152 + Tpd52l2 protein_coding retained_intron MGP_AJ_T0059931.1 MGP_AJ_G0026992.1 mouse_genomes_project 2 180363662 180366419 + Tpd52l2 protein_coding retained_intron MGP_AJ_T0098835.1 MGP_AJ_G0036819.1 mouse_genomes_project 2 155461645 155461781 - Gm27653 scaRNA scaRNA MGP_AJ_T0058431.1 MGP_AJ_G0026658.1 mouse_genomes_project 2 151657261 151718441 + MGP_AJ_P0058431 Asxl1 protein_coding protein_coding MGP_AJ_T0058432.1 MGP_AJ_G0026658.1 mouse_genomes_project 2 151657750 151718448 + MGP_AJ_P0058432 Asxl1 protein_coding unknown_likely_coding MGP_AJ_T0058433.1 MGP_AJ_G0026658.1 mouse_genomes_project 2 151659087 151669341 + Asxl1 protein_coding processed_transcript MGP_AJ_T0058434.1 MGP_AJ_G0026658.1 mouse_genomes_project 2 151659215 151706041 + Asxl1 protein_coding processed_transcript MGP_AJ_T0058435.1 MGP_AJ_G0026658.1 mouse_genomes_project 2 151707306 151711272 + Asxl1 protein_coding retained_intron MGP_AJ_T0001066.1 MGP_AJ_G0000997.1 mouse_genomes_project 2 33264207 33267379 - TEC TEC MGP_AJ_T0059621.1 MGP_AJ_G0026930.1 mouse_genomes_project 2 172844078 172856803 + MGP_AJ_P0059621 Npepl1 protein_coding protein_coding MGP_AJ_T0059622.1 MGP_AJ_G0026930.1 mouse_genomes_project 2 172844883 172854112 + MGP_AJ_P0059622 Npepl1 protein_coding nonsense_mediated_decay MGP_AJ_T0059623.1 MGP_AJ_G0026930.1 mouse_genomes_project 2 172844909 172856432 + Npepl1 protein_coding retained_intron MGP_AJ_T0059624.1 MGP_AJ_G0026930.1 mouse_genomes_project 2 172845302 172849833 + Npepl1 protein_coding retained_intron MGP_AJ_T0101068.1 MGP_AJ_G0039034.1 mouse_genomes_project 2 128316110 128316196 + Gm23187 snoRNA snoRNA MGP_AJ_T0052675.1 MGP_AJ_G0025338.1 mouse_genomes_project 2 11252584 11301383 + MGP_AJ_P0052675 Tmem236 protein_coding protein_coding MGP_AJ_T0057998.1 MGP_AJ_G0026534.1 mouse_genomes_project 2 138336180 138487185 - MGP_AJ_P0057998 Sel1l2 protein_coding protein_coding MGP_AJ_T0057999.1 MGP_AJ_G0026534.1 mouse_genomes_project 2 138400911 138404088 - Sel1l2 protein_coding processed_transcript MGP_AJ_T0058000.1 MGP_AJ_G0026534.1 mouse_genomes_project 2 138400916 138487187 - MGP_AJ_P0058000 Sel1l2 protein_coding protein_coding MGP_AJ_T0055916.1 MGP_AJ_G0026047.1 mouse_genomes_project 2 86807974 86808910 - MGP_AJ_P0055916 Olfr1224-ps1 protein_coding protein_coding MGP_AJ_T0004167.1 MGP_AJ_G0003678.1 mouse_genomes_project 2 164000145 164008283 + Gm14437 antisense antisense MGP_AJ_T0055606.1 MGP_AJ_G0025866.1 mouse_genomes_project 2 79497893 79701615 + MGP_AJ_P0055606 Zfp804a protein_coding protein_coding MGP_AJ_T0055607.1 MGP_AJ_G0025866.1 mouse_genomes_project 2 79676419 79698622 + Zfp804a protein_coding processed_transcript MGP_AJ_T0058489.1 MGP_AJ_G0026676.1 mouse_genomes_project 2 152555591 152572989 + MGP_AJ_P0058489 Bpifb5 protein_coding protein_coding MGP_AJ_T0059890.1 MGP_AJ_G0026986.1 mouse_genomes_project 2 180209462 180217451 - MGP_AJ_P0059890 Arfrp1 protein_coding nonsense_mediated_decay MGP_AJ_T0059891.1 MGP_AJ_G0026986.1 mouse_genomes_project 2 180209518 180211774 - Arfrp1 protein_coding retained_intron MGP_AJ_T0059892.1 MGP_AJ_G0026986.1 mouse_genomes_project 2 180210948 180217443 - Arfrp1 protein_coding retained_intron MGP_AJ_T0059893.1 MGP_AJ_G0026986.1 mouse_genomes_project 2 180211061 180217429 - Arfrp1 protein_coding retained_intron MGP_AJ_T0059894.1 MGP_AJ_G0026986.1 mouse_genomes_project 2 180211107 180217436 - MGP_AJ_P0059894 Arfrp1 protein_coding protein_coding MGP_AJ_T0059895.1 MGP_AJ_G0026986.1 mouse_genomes_project 2 180211135 180216920 - Arfrp1 protein_coding retained_intron MGP_AJ_T0059896.1 MGP_AJ_G0026986.1 mouse_genomes_project 2 180211342 180217470 - Arfrp1 protein_coding retained_intron MGP_AJ_T0059897.1 MGP_AJ_G0026986.1 mouse_genomes_project 2 180211348 180217447 - MGP_AJ_P0059897 Arfrp1 protein_coding nonsense_mediated_decay MGP_AJ_T0059898.1 MGP_AJ_G0026986.1 mouse_genomes_project 2 180213082 180217376 - Arfrp1 protein_coding processed_transcript MGP_AJ_T0059899.1 MGP_AJ_G0026986.1 mouse_genomes_project 2 180216398 180217460 - Arfrp1 protein_coding retained_intron MGP_AJ_T0057734.1 MGP_AJ_G0026479.1 mouse_genomes_project 2 128726556 128731009 - Slc4a11 protein_coding retained_intron MGP_AJ_T0057735.1 MGP_AJ_G0026479.1 mouse_genomes_project 2 128726556 128740775 - MGP_AJ_P0057735 Slc4a11 protein_coding protein_coding MGP_AJ_T0057736.1 MGP_AJ_G0026479.1 mouse_genomes_project 2 128729020 128740725 - Slc4a11 protein_coding retained_intron MGP_AJ_T0057737.1 MGP_AJ_G0026479.1 mouse_genomes_project 2 128734088 128735238 - Slc4a11 protein_coding retained_intron MGP_AJ_T0057738.1 MGP_AJ_G0026479.1 mouse_genomes_project 2 128734804 128740725 - MGP_AJ_P0057738 Slc4a11 protein_coding protein_coding MGP_AJ_T0099783.1 MGP_AJ_G0037749.1 mouse_genomes_project 2 123052334 123052441 + Gm22352 snRNA snRNA MGP_AJ_T0056132.1 MGP_AJ_G0026109.1 mouse_genomes_project 2 88877215 88889128 + MGP_AJ_P0056132 Arfgap2 protein_coding protein_coding MGP_AJ_T0056133.1 MGP_AJ_G0026109.1 mouse_genomes_project 2 88877246 88878469 + Arfgap2 protein_coding retained_intron MGP_AJ_T0056134.1 MGP_AJ_G0026109.1 mouse_genomes_project 2 88877255 88887765 + MGP_AJ_P0056134 Arfgap2 protein_coding protein_coding MGP_AJ_T0056135.1 MGP_AJ_G0026109.1 mouse_genomes_project 2 88877256 88880667 + Arfgap2 protein_coding retained_intron MGP_AJ_T0056136.1 MGP_AJ_G0026109.1 mouse_genomes_project 2 88877624 88879311 + Arfgap2 protein_coding processed_transcript MGP_AJ_T0056137.1 MGP_AJ_G0026109.1 mouse_genomes_project 2 88881256 88885587 + Arfgap2 protein_coding retained_intron MGP_AJ_T0056138.1 MGP_AJ_G0026109.1 mouse_genomes_project 2 88882006 88886105 + Arfgap2 protein_coding retained_intron MGP_AJ_T0059455.1 MGP_AJ_G0026883.1 mouse_genomes_project 2 166216675 166241464 - MGP_AJ_P0059455 Ube2v1 protein_coding unknown_likely_coding MGP_AJ_T0059456.1 MGP_AJ_G0026883.1 mouse_genomes_project 2 166218738 166241416 - MGP_AJ_P0059456 Ube2v1 protein_coding protein_coding MGP_AJ_T0059457.1 MGP_AJ_G0026883.1 mouse_genomes_project 2 166226018 166241419 - Ube2v1 protein_coding retained_intron MGP_AJ_T0013792.1 MGP_AJ_G0011887.1 mouse_genomes_project 2 141956019 141956352 + processed_pseudogene processed_pseudogene MGP_AJ_T0001042.1 MGP_AJ_G0000973.1 mouse_genomes_project 2 11099813 11103777 - TEC TEC MGP_AJ_T0004041.1 MGP_AJ_G0003589.1 mouse_genomes_project 2 100366861 100375714 - Gm13872 antisense antisense MGP_AJ_T0004042.1 MGP_AJ_G0003589.1 mouse_genomes_project 2 100372605 100375701 - Gm13872 antisense antisense MGP_AJ_T0004043.1 MGP_AJ_G0003589.1 mouse_genomes_project 2 100373592 100375715 - Gm13872 antisense antisense MGP_AJ_T0013883.1 MGP_AJ_G0011978.1 mouse_genomes_project 2 177843532 177844547 - processed_pseudogene processed_pseudogene MGP_AJ_T0007189.1 MGP_AJ_G0005891.1 mouse_genomes_project 2 32706394 32708954 + Gm35202 lincRNA lincRNA MGP_AJ_T0059413.1 MGP_AJ_G0026874.1 mouse_genomes_project 2 165640343 165666996 - MGP_AJ_P0059413 Znfx1 protein_coding protein_coding MGP_AJ_T0059414.1 MGP_AJ_G0026874.1 mouse_genomes_project 2 165640349 165648046 - MGP_AJ_P0059414 Znfx1 protein_coding protein_coding MGP_AJ_T0059415.1 MGP_AJ_G0026874.1 mouse_genomes_project 2 165648579 165664407 - MGP_AJ_P0059415 Znfx1 protein_coding protein_coding MGP_AJ_T0059416.1 MGP_AJ_G0026874.1 mouse_genomes_project 2 165648664 165666698 - MGP_AJ_P0059416 Znfx1 protein_coding protein_coding MGP_AJ_T0059417.1 MGP_AJ_G0026874.1 mouse_genomes_project 2 165653740 165666621 - Znfx1 protein_coding retained_intron MGP_AJ_T0052849.1 MGP_AJ_G0025369.1 mouse_genomes_project 2 19510377 19581822 + MGP_AJ_P0052849 Gad2 protein_coding protein_coding MGP_AJ_T0052850.1 MGP_AJ_G0025369.1 mouse_genomes_project 2 19511513 19518213 + Gad2 protein_coding processed_transcript MGP_AJ_T0013466.1 MGP_AJ_G0011561.1 mouse_genomes_project 2 21443680 21444624 + processed_pseudogene processed_pseudogene MGP_AJ_T0013858.1 MGP_AJ_G0011953.1 mouse_genomes_project 2 160020623 160021074 - processed_pseudogene processed_pseudogene MGP_AJ_T0056271.1 MGP_AJ_G0026130.1 mouse_genomes_project 2 90086352 90093394 - MGP_AJ_P0056271 Slc35c1 protein_coding protein_coding MGP_AJ_T0056272.1 MGP_AJ_G0026130.1 mouse_genomes_project 2 90086355 90094138 - MGP_AJ_P0056272 Slc35c1 protein_coding protein_coding MGP_AJ_T0056273.1 MGP_AJ_G0026130.1 mouse_genomes_project 2 90092285 90093309 - MGP_AJ_P0056273 Slc35c1 protein_coding protein_coding MGP_AJ_T0102468.1 MGP_AJ_G0040210.1 mouse_genomes_project 2 36642404 36647104 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0017760.1 MGP_AJ_G0015389.1 mouse_genomes_project 2 32745187 32754358 - Gm13446 processed_transcript processed_transcript MGP_AJ_T0017761.1 MGP_AJ_G0015389.1 mouse_genomes_project 2 32750504 32754141 - Gm13446 processed_transcript processed_transcript MGP_AJ_T0053207.1 MGP_AJ_G0025430.1 mouse_genomes_project 2 22504243 22533683 - MGP_AJ_P0053207 Traf2 protein_coding protein_coding MGP_AJ_T0053208.1 MGP_AJ_G0025430.1 mouse_genomes_project 2 22505126 22525914 - Traf2 protein_coding retained_intron MGP_AJ_T0053209.1 MGP_AJ_G0025430.1 mouse_genomes_project 2 22505126 22533653 - MGP_AJ_P0053209 Traf2 protein_coding protein_coding MGP_AJ_T0099770.1 MGP_AJ_G0037736.1 mouse_genomes_project 2 78021218 78021321 + Gm24461 snRNA snRNA MGP_AJ_T0057177.1 MGP_AJ_G0026346.1 mouse_genomes_project 2 119002161 119020765 - Trp53bp1 protein_coding processed_transcript MGP_AJ_T0057178.1 MGP_AJ_G0026346.1 mouse_genomes_project 2 119003719 119078751 - MGP_AJ_P0057178 Trp53bp1 protein_coding protein_coding MGP_AJ_T0057179.1 MGP_AJ_G0026346.1 mouse_genomes_project 2 119003719 119078685 - MGP_AJ_P0057179 Trp53bp1 protein_coding protein_coding MGP_AJ_T0057180.1 MGP_AJ_G0026346.1 mouse_genomes_project 2 119007127 119044467 - MGP_AJ_P0057180 Trp53bp1 protein_coding nonsense_mediated_decay MGP_AJ_T0057181.1 MGP_AJ_G0026346.1 mouse_genomes_project 2 119008515 119013784 - Trp53bp1 protein_coding processed_transcript MGP_AJ_T0057182.1 MGP_AJ_G0026346.1 mouse_genomes_project 2 119011503 119016550 - MGP_AJ_P0057182 Trp53bp1 protein_coding nonsense_mediated_decay MGP_AJ_T0057183.1 MGP_AJ_G0026346.1 mouse_genomes_project 2 119013883 119017366 - Trp53bp1 protein_coding processed_transcript MGP_AJ_T0057184.1 MGP_AJ_G0026346.1 mouse_genomes_project 2 119017211 119029989 - MGP_AJ_P0057184 Trp53bp1 protein_coding nonsense_mediated_decay MGP_AJ_T0057185.1 MGP_AJ_G0026346.1 mouse_genomes_project 2 119017636 119029980 - Trp53bp1 protein_coding retained_intron MGP_AJ_T0057186.1 MGP_AJ_G0026346.1 mouse_genomes_project 2 119020091 119027199 - Trp53bp1 protein_coding processed_transcript MGP_AJ_T0057187.1 MGP_AJ_G0026346.1 mouse_genomes_project 2 119024686 119030127 - Trp53bp1 protein_coding retained_intron MGP_AJ_T0057188.1 MGP_AJ_G0026346.1 mouse_genomes_project 2 119024922 119078665 - MGP_AJ_P0057188 Trp53bp1 protein_coding protein_coding MGP_AJ_T0057189.1 MGP_AJ_G0026346.1 mouse_genomes_project 2 119036881 119044150 - MGP_AJ_P0057189 Trp53bp1 protein_coding protein_coding MGP_AJ_T0057190.1 MGP_AJ_G0026346.1 mouse_genomes_project 2 119040552 119044282 - Trp53bp1 protein_coding processed_transcript MGP_AJ_T0057191.1 MGP_AJ_G0026346.1 mouse_genomes_project 2 119045284 119060340 - MGP_AJ_P0057191 Trp53bp1 protein_coding nonsense_mediated_decay MGP_AJ_T0057192.1 MGP_AJ_G0026346.1 mouse_genomes_project 2 119065106 119078713 - Trp53bp1 protein_coding processed_transcript MGP_AJ_T0057193.1 MGP_AJ_G0026346.1 mouse_genomes_project 2 119067840 119077630 - Trp53bp1 protein_coding retained_intron MGP_AJ_T0057194.1 MGP_AJ_G0026346.1 mouse_genomes_project 2 119074656 119078705 - Trp53bp1 protein_coding retained_intron MGP_AJ_T0057195.1 MGP_AJ_G0026346.1 mouse_genomes_project 2 119076973 119078714 - Trp53bp1 protein_coding retained_intron MGP_AJ_T0013770.1 MGP_AJ_G0011865.1 mouse_genomes_project 2 131038933 131039933 - processed_pseudogene processed_pseudogene MGP_AJ_T0054223.1 MGP_AJ_G0025599.1 mouse_genomes_project 2 29913339 29918848 + MGP_AJ_P0054223 Tor2a protein_coding protein_coding MGP_AJ_T0054224.1 MGP_AJ_G0025599.1 mouse_genomes_project 2 29913350 29918543 + MGP_AJ_P0054224 Tor2a protein_coding protein_coding MGP_AJ_T0054225.1 MGP_AJ_G0025599.1 mouse_genomes_project 2 29913360 29918334 + MGP_AJ_P0054225 Tor2a protein_coding nonsense_mediated_decay MGP_AJ_T0054226.1 MGP_AJ_G0025599.1 mouse_genomes_project 2 29913365 29918848 + MGP_AJ_P0054226 Tor2a protein_coding nonsense_mediated_decay MGP_AJ_T0054227.1 MGP_AJ_G0025599.1 mouse_genomes_project 2 29913381 29918846 + Tor2a protein_coding retained_intron MGP_AJ_T0054228.1 MGP_AJ_G0025599.1 mouse_genomes_project 2 29913396 29914089 + Tor2a protein_coding processed_transcript MGP_AJ_T0054229.1 MGP_AJ_G0025599.1 mouse_genomes_project 2 29913424 29918198 + MGP_AJ_P0054229 Tor2a protein_coding protein_coding MGP_AJ_T0054230.1 MGP_AJ_G0025599.1 mouse_genomes_project 2 29916399 29918393 + Tor2a protein_coding retained_intron MGP_AJ_T0017843.1 MGP_AJ_G0015437.1 mouse_genomes_project 2 118057165 118057843 - Gm13997 processed_transcript processed_transcript MGP_AJ_T0007321.1 MGP_AJ_G0005998.1 mouse_genomes_project 2 117393469 117400200 + 1700020I14Rik lincRNA lincRNA MGP_AJ_T0007322.1 MGP_AJ_G0005998.1 mouse_genomes_project 2 117393475 117406988 + 1700020I14Rik lincRNA lincRNA MGP_AJ_T0101045.1 MGP_AJ_G0039011.1 mouse_genomes_project 2 78173889 78174016 + Gm25420 snoRNA snoRNA MGP_AJ_T0055804.1 MGP_AJ_G0025952.1 mouse_genomes_project 2 84185829 84186771 - MGP_AJ_P0055804 Olfr1090 protein_coding protein_coding MGP_AJ_T0058482.1 MGP_AJ_G0026673.1 mouse_genomes_project 2 152468301 152474627 + MGP_AJ_P0058482 Bpifa1 protein_coding protein_coding MGP_AJ_T0058483.1 MGP_AJ_G0026673.1 mouse_genomes_project 2 152468320 152470579 + Bpifa1 protein_coding processed_transcript MGP_AJ_T0058484.1 MGP_AJ_G0026673.1 mouse_genomes_project 2 152469752 152473150 + Bpifa1 protein_coding processed_transcript MGP_AJ_T0059057.1 MGP_AJ_G0026783.1 mouse_genomes_project 2 161593461 161623789 + MGP_AJ_P0059057 Mybl2 protein_coding protein_coding MGP_AJ_T0059058.1 MGP_AJ_G0026783.1 mouse_genomes_project 2 161598122 161603321 + Mybl2 protein_coding processed_transcript MGP_AJ_T0059059.1 MGP_AJ_G0026783.1 mouse_genomes_project 2 161607057 161612060 + Mybl2 protein_coding retained_intron MGP_AJ_T0059060.1 MGP_AJ_G0026783.1 mouse_genomes_project 2 161613661 161622115 + MGP_AJ_P0059060 Mybl2 protein_coding protein_coding MGP_AJ_T0059061.1 MGP_AJ_G0026783.1 mouse_genomes_project 2 161614069 161620384 + Mybl2 protein_coding retained_intron MGP_AJ_T0001043.1 MGP_AJ_G0000974.1 mouse_genomes_project 2 11115175 11117774 - TEC TEC MGP_AJ_T0007442.1 MGP_AJ_G0006101.1 mouse_genomes_project 2 179696203 179699369 + lincRNA lincRNA MGP_AJ_T0055350.1 MGP_AJ_G0025814.1 mouse_genomes_project 2 70694155 70719342 + MGP_AJ_P0055350 Scrn3 protein_coding protein_coding MGP_AJ_T0055351.1 MGP_AJ_G0025814.1 mouse_genomes_project 2 70694208 70702333 + MGP_AJ_P0055351 Scrn3 protein_coding protein_coding MGP_AJ_T0055352.1 MGP_AJ_G0025814.1 mouse_genomes_project 2 70694213 70697338 + Scrn3 protein_coding processed_transcript MGP_AJ_T0055353.1 MGP_AJ_G0025814.1 mouse_genomes_project 2 70694213 70711326 + Scrn3 protein_coding processed_transcript MGP_AJ_T0055354.1 MGP_AJ_G0025814.1 mouse_genomes_project 2 70694230 70703559 + Scrn3 protein_coding processed_transcript MGP_AJ_T0055355.1 MGP_AJ_G0025814.1 mouse_genomes_project 2 70700936 70717823 + Scrn3 protein_coding processed_transcript MGP_AJ_T0056543.1 MGP_AJ_G0026185.1 mouse_genomes_project 2 102536277 102616859 + MGP_AJ_P0056543 Ccdc73 protein_coding protein_coding MGP_AJ_T0056544.1 MGP_AJ_G0026185.1 mouse_genomes_project 2 102554997 102661627 + MGP_AJ_P0056544 Ccdc73 protein_coding protein_coding MGP_AJ_T0056545.1 MGP_AJ_G0026185.1 mouse_genomes_project 2 102575924 102651940 + MGP_AJ_P0056545 Ccdc73 protein_coding protein_coding MGP_AJ_T0056546.1 MGP_AJ_G0026185.1 mouse_genomes_project 2 102654096 102680641 + MGP_AJ_P0056546 Ccdc73 protein_coding protein_coding MGP_AJ_T0056551.1 MGP_AJ_G0026185.1 mouse_genomes_project 2 102679917 102680694 + Ccdc73 protein_coding processed_transcript MGP_AJ_T0059555.1 MGP_AJ_G0026908.1 mouse_genomes_project 2 171039625 171049718 + MGP_AJ_P0059555 Fam210b protein_coding protein_coding MGP_AJ_T0010392.1 MGP_AJ_G0008514.1 mouse_genomes_project 2 27453764 27453860 + miRNA miRNA MGP_AJ_T0102492.1 MGP_AJ_G0040234.1 mouse_genomes_project 2 85362924 85363846 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0057812.1 MGP_AJ_G0026492.1 mouse_genomes_project 2 129281040 129294968 + MGP_AJ_P0057812 Mavs protein_coding nonsense_mediated_decay MGP_AJ_T0057813.1 MGP_AJ_G0026492.1 mouse_genomes_project 2 129281044 129294971 + MGP_AJ_P0057813 Mavs protein_coding protein_coding MGP_AJ_T0057814.1 MGP_AJ_G0026492.1 mouse_genomes_project 2 129281082 129294971 + MGP_AJ_P0057814 Mavs protein_coding protein_coding MGP_AJ_T0057815.1 MGP_AJ_G0026492.1 mouse_genomes_project 2 129288879 129292611 + Mavs protein_coding processed_transcript MGP_AJ_T0055922.1 MGP_AJ_G0026052.1 mouse_genomes_project 2 86917694 86918612 - MGP_AJ_P0055922 Olfr1230 protein_coding protein_coding MGP_AJ_T0052612.1 MGP_AJ_G0025328.1 mouse_genomes_project 2 9426535 9503028 - Fam188a protein_coding processed_transcript MGP_AJ_T0052613.1 MGP_AJ_G0025328.1 mouse_genomes_project 2 9426535 9503050 - MGP_AJ_P0052613 Fam188a protein_coding protein_coding MGP_AJ_T0052614.1 MGP_AJ_G0025328.1 mouse_genomes_project 2 9426535 9503024 - MGP_AJ_P0052614 Fam188a protein_coding nonsense_mediated_decay MGP_AJ_T0052615.1 MGP_AJ_G0025328.1 mouse_genomes_project 2 9426535 9503028 - MGP_AJ_P0052615 Fam188a protein_coding nonsense_mediated_decay MGP_AJ_T0052616.1 MGP_AJ_G0025328.1 mouse_genomes_project 2 9426535 9503015 - MGP_AJ_P0052616 Fam188a protein_coding nonsense_mediated_decay MGP_AJ_T0052617.1 MGP_AJ_G0025328.1 mouse_genomes_project 2 9426538 9503032 - MGP_AJ_P0052617 Fam188a protein_coding nonsense_mediated_decay MGP_AJ_T0052618.1 MGP_AJ_G0025328.1 mouse_genomes_project 2 9426904 9436184 - MGP_AJ_P0052618 Fam188a protein_coding nonsense_mediated_decay MGP_AJ_T0052619.1 MGP_AJ_G0025328.1 mouse_genomes_project 2 9427190 9477541 - Fam188a protein_coding retained_intron MGP_AJ_T0052620.1 MGP_AJ_G0025328.1 mouse_genomes_project 2 9427238 9502868 - Fam188a protein_coding processed_transcript MGP_AJ_T0052621.1 MGP_AJ_G0025328.1 mouse_genomes_project 2 9430202 9502990 - MGP_AJ_P0052621 Fam188a protein_coding protein_coding MGP_AJ_T0052622.1 MGP_AJ_G0025328.1 mouse_genomes_project 2 9436057 9503011 - Fam188a protein_coding retained_intron MGP_AJ_T0052623.1 MGP_AJ_G0025328.1 mouse_genomes_project 2 9443644 9445489 - Fam188a protein_coding retained_intron MGP_AJ_T0052624.1 MGP_AJ_G0025328.1 mouse_genomes_project 2 9443813 9503029 - MGP_AJ_P0052624 Fam188a protein_coding protein_coding MGP_AJ_T0052625.1 MGP_AJ_G0025328.1 mouse_genomes_project 2 9465529 9466365 - Fam188a protein_coding retained_intron MGP_AJ_T0052626.1 MGP_AJ_G0025328.1 mouse_genomes_project 2 9466230 9493481 - MGP_AJ_P0052626 Fam188a protein_coding protein_coding MGP_AJ_T0052627.1 MGP_AJ_G0025328.1 mouse_genomes_project 2 9479314 9503021 - Fam188a protein_coding retained_intron MGP_AJ_T0052628.1 MGP_AJ_G0025328.1 mouse_genomes_project 2 9479699 9493620 - Fam188a protein_coding retained_intron MGP_AJ_T0052629.1 MGP_AJ_G0025328.1 mouse_genomes_project 2 9480714 9502971 - MGP_AJ_P0052629 Fam188a protein_coding protein_coding MGP_AJ_T0052630.1 MGP_AJ_G0025328.1 mouse_genomes_project 2 9480725 9502829 - MGP_AJ_P0052630 Fam188a protein_coding nonsense_mediated_decay MGP_AJ_T0052631.1 MGP_AJ_G0025328.1 mouse_genomes_project 2 9483653 9484385 - Fam188a protein_coding processed_transcript MGP_AJ_T0056755.1 MGP_AJ_G0026264.1 mouse_genomes_project 2 111945243 111953268 - MGP_AJ_P0056755 Zfp770 protein_coding protein_coding MGP_AJ_T0056756.1 MGP_AJ_G0026264.1 mouse_genomes_project 2 111950358 111953239 - Zfp770 protein_coding processed_transcript MGP_AJ_T0003883.1 MGP_AJ_G0003472.1 mouse_genomes_project 2 422052 427986 + Gm13184 antisense antisense MGP_AJ_T0004106.1 MGP_AJ_G0003631.1 mouse_genomes_project 2 139294825 139300750 - Macrod2os2 antisense antisense MGP_AJ_T0004108.1 MGP_AJ_G0003631.1 mouse_genomes_project 2 139297139 139297526 - Macrod2os2 antisense antisense MGP_AJ_T0013757.1 MGP_AJ_G0011852.1 mouse_genomes_project 2 128928036 128929304 + processed_pseudogene processed_pseudogene MGP_AJ_T0013494.1 MGP_AJ_G0011589.1 mouse_genomes_project 2 34103474 34103970 + processed_pseudogene processed_pseudogene MGP_AJ_T0059038.1 MGP_AJ_G0026778.1 mouse_genomes_project 2 161453329 161454174 - MGP_AJ_P0059038 Cisd3 protein_coding protein_coding MGP_AJ_T0013508.1 MGP_AJ_G0011603.1 mouse_genomes_project 2 36774382 36774865 - processed_pseudogene processed_pseudogene MGP_AJ_T0101087.1 MGP_AJ_G0039053.1 mouse_genomes_project 2 156873406 156873519 - Gm26003 snoRNA snoRNA MGP_AJ_T0055773.1 MGP_AJ_G0025922.1 mouse_genomes_project 2 83429657 83430686 + MGP_AJ_P0055773 Olfr1033 protein_coding protein_coding MGP_AJ_T0054845.1 MGP_AJ_G0025723.1 mouse_genomes_project 2 55456659 55488938 - MGP_AJ_P0054845 Cytip protein_coding protein_coding MGP_AJ_T0054846.1 MGP_AJ_G0025723.1 mouse_genomes_project 2 55461630 55520119 - Cytip protein_coding processed_transcript MGP_AJ_T0054847.1 MGP_AJ_G0025723.1 mouse_genomes_project 2 55461715 55520129 - Cytip protein_coding processed_transcript MGP_AJ_T0054848.1 MGP_AJ_G0025723.1 mouse_genomes_project 2 55461847 55485229 - Cytip protein_coding processed_transcript MGP_AJ_T0054849.1 MGP_AJ_G0025723.1 mouse_genomes_project 2 55475406 55488564 - Cytip protein_coding processed_transcript MGP_AJ_T0054850.1 MGP_AJ_G0025723.1 mouse_genomes_project 2 55475581 55520130 - Cytip protein_coding processed_transcript MGP_AJ_T0054851.1 MGP_AJ_G0025723.1 mouse_genomes_project 2 55488420 55520134 - Cytip protein_coding processed_transcript MGP_AJ_T0054852.1 MGP_AJ_G0025723.1 mouse_genomes_project 2 55488481 55489100 - Cytip protein_coding processed_transcript MGP_AJ_T0056685.1 MGP_AJ_G0026233.1 mouse_genomes_project 2 109531273 109532221 + MGP_AJ_P0056685 Olfr1302 protein_coding protein_coding MGP_AJ_T0054131.1 MGP_AJ_G0025582.1 mouse_genomes_project 2 29528909 29532362 - MGP_AJ_P0054131 Lcn2 protein_coding protein_coding MGP_AJ_T0054132.1 MGP_AJ_G0025582.1 mouse_genomes_project 2 29528916 29532006 - Lcn2 protein_coding processed_transcript MGP_AJ_T0054133.1 MGP_AJ_G0025582.1 mouse_genomes_project 2 29528922 29530283 - Lcn2 protein_coding retained_intron MGP_AJ_T0054134.1 MGP_AJ_G0025582.1 mouse_genomes_project 2 29529466 29530391 - Lcn2 protein_coding retained_intron MGP_AJ_T0054135.1 MGP_AJ_G0025582.1 mouse_genomes_project 2 29529728 29532536 - MGP_AJ_P0054135 Lcn2 protein_coding protein_coding MGP_AJ_T0054136.1 MGP_AJ_G0025582.1 mouse_genomes_project 2 29530839 29532043 - Lcn2 protein_coding retained_intron MGP_AJ_T0055787.1 MGP_AJ_G0025936.1 mouse_genomes_project 2 83739534 83740473 - MGP_AJ_P0055787 Olfr1054 protein_coding protein_coding MGP_AJ_T0052919.1 MGP_AJ_G0025386.1 mouse_genomes_project 2 21314042 21341602 + MGP_AJ_P0052919 Psd4 protein_coding protein_coding MGP_AJ_T0052920.1 MGP_AJ_G0025386.1 mouse_genomes_project 2 21314072 21362303 + MGP_AJ_P0052920 Psd4 protein_coding protein_coding MGP_AJ_T0052921.1 MGP_AJ_G0025386.1 mouse_genomes_project 2 21332674 21356080 + MGP_AJ_P0052921 Psd4 protein_coding protein_coding MGP_AJ_T0052922.1 MGP_AJ_G0025386.1 mouse_genomes_project 2 21332677 21341755 + MGP_AJ_P0052922 Psd4 protein_coding protein_coding MGP_AJ_T0052923.1 MGP_AJ_G0025386.1 mouse_genomes_project 2 21332678 21344664 + Psd4 protein_coding processed_transcript MGP_AJ_T0052924.1 MGP_AJ_G0025386.1 mouse_genomes_project 2 21332695 21341649 + MGP_AJ_P0052924 Psd4 protein_coding protein_coding MGP_AJ_T0052925.1 MGP_AJ_G0025386.1 mouse_genomes_project 2 21333911 21341935 + MGP_AJ_P0052925 Psd4 protein_coding protein_coding MGP_AJ_T0052926.1 MGP_AJ_G0025386.1 mouse_genomes_project 2 21333959 21355551 + MGP_AJ_P0052926 Psd4 protein_coding protein_coding MGP_AJ_T0052927.1 MGP_AJ_G0025386.1 mouse_genomes_project 2 21348385 21350602 + MGP_AJ_P0052927 Psd4 protein_coding nonsense_mediated_decay MGP_AJ_T0052928.1 MGP_AJ_G0025386.1 mouse_genomes_project 2 21352979 21354358 + Psd4 protein_coding retained_intron MGP_AJ_T0055451.1 MGP_AJ_G0025837.1 mouse_genomes_project 2 73330246 73332765 - MGP_AJ_P0055451 protein_coding protein_coding MGP_AJ_T0058746.1 MGP_AJ_G0026725.1 mouse_genomes_project 2 154619201 154621082 + MGP_AJ_P0058746 Romo1 protein_coding protein_coding MGP_AJ_T0058747.1 MGP_AJ_G0026725.1 mouse_genomes_project 2 154619395 154621079 + MGP_AJ_P0058747 Romo1 protein_coding protein_coding MGP_AJ_T0058748.1 MGP_AJ_G0026725.1 mouse_genomes_project 2 154619399 154621068 + MGP_AJ_P0058748 Romo1 protein_coding protein_coding MGP_AJ_T0058749.1 MGP_AJ_G0026725.1 mouse_genomes_project 2 154619402 154621079 + MGP_AJ_P0058749 Romo1 protein_coding protein_coding MGP_AJ_T0099753.1 MGP_AJ_G0037719.1 mouse_genomes_project 2 25648793 25648897 + Gm22675 snRNA snRNA MGP_AJ_T0013777.1 MGP_AJ_G0011872.1 mouse_genomes_project 2 134839116 134839586 - processed_pseudogene processed_pseudogene MGP_AJ_T0053259.1 MGP_AJ_G0025445.1 mouse_genomes_project 2 22747101 22750190 + MGP_AJ_P0053259 Obp2b protein_coding protein_coding MGP_AJ_T0013606.1 MGP_AJ_G0011701.1 mouse_genomes_project 2 73216565 73217331 - processed_pseudogene processed_pseudogene MGP_AJ_T0053262.1 MGP_AJ_G0025448.1 mouse_genomes_project 2 22808980 22824783 - MGP_AJ_P0053262 Glt6d1 protein_coding protein_coding MGP_AJ_T0053263.1 MGP_AJ_G0025448.1 mouse_genomes_project 2 22810335 22824766 - Glt6d1 protein_coding processed_transcript MGP_AJ_T0057332.1 MGP_AJ_G0026377.1 mouse_genomes_project 2 120310652 120338100 + MGP_AJ_P0057332 Slc28a2 protein_coding protein_coding MGP_AJ_T0057333.1 MGP_AJ_G0026377.1 mouse_genomes_project 2 120310759 120338097 + MGP_AJ_P0057333 Slc28a2 protein_coding protein_coding MGP_AJ_T0057334.1 MGP_AJ_G0026377.1 mouse_genomes_project 2 120311777 120419401 + MGP_AJ_P0057334 Slc28a2 protein_coding protein_coding MGP_AJ_T0057335.1 MGP_AJ_G0026377.1 mouse_genomes_project 2 120311876 120393695 + Slc28a2 protein_coding processed_transcript MGP_AJ_T0057336.1 MGP_AJ_G0026377.1 mouse_genomes_project 2 120333140 120337761 + Slc28a2 protein_coding processed_transcript MGP_AJ_T0007432.1 MGP_AJ_G0006091.1 mouse_genomes_project 2 170686326 170694338 - Gm14641 lincRNA lincRNA MGP_AJ_T0013714.1 MGP_AJ_G0011809.1 mouse_genomes_project 2 107866852 107867837 - processed_pseudogene processed_pseudogene MGP_AJ_T0013420.1 MGP_AJ_G0011515.1 mouse_genomes_project 2 6575895 6576405 + processed_pseudogene processed_pseudogene MGP_AJ_T0055571.1 MGP_AJ_G0025857.1 mouse_genomes_project 2 77164299 77271112 + MGP_AJ_P0055571 Ppp1r1c protein_coding protein_coding MGP_AJ_T0055572.1 MGP_AJ_G0025857.1 mouse_genomes_project 2 77164441 77269331 + MGP_AJ_P0055572 Ppp1r1c protein_coding protein_coding MGP_AJ_T0055573.1 MGP_AJ_G0025857.1 mouse_genomes_project 2 77164442 77276392 + MGP_AJ_P0055573 Ppp1r1c protein_coding protein_coding MGP_AJ_T0055574.1 MGP_AJ_G0025857.1 mouse_genomes_project 2 77164581 77279295 + Ppp1r1c protein_coding processed_transcript MGP_AJ_T0055575.1 MGP_AJ_G0025857.1 mouse_genomes_project 2 77246731 77270087 + Ppp1r1c protein_coding processed_transcript MGP_AJ_T0013832.1 MGP_AJ_G0011927.1 mouse_genomes_project 2 153912016 153914570 - processed_pseudogene processed_pseudogene MGP_AJ_T0052974.1 MGP_AJ_G0025391.1 mouse_genomes_project 2 21904825 21917158 + MGP_AJ_P0052974 Zmynd19 protein_coding protein_coding MGP_AJ_T0052975.1 MGP_AJ_G0025391.1 mouse_genomes_project 2 21905243 21914350 + MGP_AJ_P0052975 Zmynd19 protein_coding protein_coding MGP_AJ_T0057787.1 MGP_AJ_G0026486.1 mouse_genomes_project 2 129179159 129179878 + MGP_AJ_P0057787 Gm11037 protein_coding protein_coding MGP_AJ_T0013449.1 MGP_AJ_G0011544.1 mouse_genomes_project 2 16146906 16148304 - processed_pseudogene processed_pseudogene MGP_AJ_T0055851.1 MGP_AJ_G0025989.1 mouse_genomes_project 2 85245600 85246533 - MGP_AJ_P0055851 Olfr1136 protein_coding protein_coding MGP_AJ_T0001034.1 MGP_AJ_G0000965.1 mouse_genomes_project 2 9469430 9472139 - TEC TEC MGP_AJ_T0010366.1 MGP_AJ_G0008488.1 mouse_genomes_project 2 7538384 7538505 + Mir466l miRNA miRNA MGP_AJ_T0013817.1 MGP_AJ_G0011912.1 mouse_genomes_project 2 148727916 148729124 + processed_pseudogene processed_pseudogene MGP_AJ_T0056923.1 MGP_AJ_G0026304.1 mouse_genomes_project 2 117157038 117267545 - MGP_AJ_P0056923 Ino80 protein_coding protein_coding MGP_AJ_T0056924.1 MGP_AJ_G0026304.1 mouse_genomes_project 2 117185966 117267471 - MGP_AJ_P0056924 Ino80 protein_coding protein_coding MGP_AJ_T0056925.1 MGP_AJ_G0026304.1 mouse_genomes_project 2 117217281 117223678 - Ino80 protein_coding retained_intron MGP_AJ_T0055421.1 MGP_AJ_G0025826.1 mouse_genomes_project 2 72073252 72076406 + MGP_AJ_P0055421 Hoxd10 protein_coding protein_coding MGP_AJ_T0054940.1 MGP_AJ_G0025737.1 mouse_genomes_project 2 57569056 57663289 - MGP_AJ_P0054940 Ly75 protein_coding protein_coding MGP_AJ_T0054941.1 MGP_AJ_G0025737.1 mouse_genomes_project 2 57570713 57663217 - MGP_AJ_P0054941 Ly75 protein_coding protein_coding MGP_AJ_T0017836.1 MGP_AJ_G0015433.1 mouse_genomes_project 2 112401753 112444732 + Gm13972 processed_transcript processed_transcript MGP_AJ_T0054486.1 MGP_AJ_G0025639.1 mouse_genomes_project 2 33333813 33392809 + MGP_AJ_P0054486 Mrrf protein_coding protein_coding MGP_AJ_T0054487.1 MGP_AJ_G0025639.1 mouse_genomes_project 2 33333822 33336241 + Mrrf protein_coding retained_intron MGP_AJ_T0054488.1 MGP_AJ_G0025639.1 mouse_genomes_project 2 33334058 33345339 + MGP_AJ_P0054488 Mrrf protein_coding nonsense_mediated_decay MGP_AJ_T0054489.1 MGP_AJ_G0025639.1 mouse_genomes_project 2 33344522 33357085 + Mrrf protein_coding processed_transcript MGP_AJ_T0013477.1 MGP_AJ_G0011572.1 mouse_genomes_project 2 26566738 26567029 + processed_pseudogene processed_pseudogene MGP_AJ_T0055312.1 MGP_AJ_G0025806.1 mouse_genomes_project 2 69317494 69598312 + MGP_AJ_P0055312 Rapgef4 protein_coding protein_coding MGP_AJ_T0055313.1 MGP_AJ_G0025806.1 mouse_genomes_project 2 69317501 69369174 + Rapgef4 protein_coding processed_transcript MGP_AJ_T0055314.1 MGP_AJ_G0025806.1 mouse_genomes_project 2 69317513 69479029 + Rapgef4 protein_coding processed_transcript MGP_AJ_T0055315.1 MGP_AJ_G0025806.1 mouse_genomes_project 2 69317541 69597214 + MGP_AJ_P0055315 Rapgef4 protein_coding protein_coding MGP_AJ_T0055316.1 MGP_AJ_G0025806.1 mouse_genomes_project 2 69317541 69549119 + MGP_AJ_P0055316 Rapgef4 protein_coding unknown_likely_coding MGP_AJ_T0055317.1 MGP_AJ_G0025806.1 mouse_genomes_project 2 69393340 69598310 + MGP_AJ_P0055317 Rapgef4 protein_coding protein_coding MGP_AJ_T0055318.1 MGP_AJ_G0025806.1 mouse_genomes_project 2 69393728 69479204 + Rapgef4 protein_coding processed_transcript MGP_AJ_T0055319.1 MGP_AJ_G0025806.1 mouse_genomes_project 2 69478441 69536194 + Rapgef4 protein_coding processed_transcript MGP_AJ_T0055320.1 MGP_AJ_G0025806.1 mouse_genomes_project 2 69478458 69501885 + Rapgef4 protein_coding processed_transcript MGP_AJ_T0055321.1 MGP_AJ_G0025806.1 mouse_genomes_project 2 69518748 69598310 + Rapgef4 protein_coding processed_transcript MGP_AJ_T0055322.1 MGP_AJ_G0025806.1 mouse_genomes_project 2 69538740 69548836 + Rapgef4 protein_coding processed_transcript MGP_AJ_T0055323.1 MGP_AJ_G0025806.1 mouse_genomes_project 2 69583445 69597493 + Rapgef4 protein_coding processed_transcript MGP_AJ_T0013472.1 MGP_AJ_G0011567.1 mouse_genomes_project 2 23578087 23578656 + processed_pseudogene processed_pseudogene MGP_AJ_T0059745.1 MGP_AJ_G0026958.1 mouse_genomes_project 2 179117065 179129300 - MGP_AJ_P0059745 Rbbp8nl protein_coding protein_coding MGP_AJ_T0056367.1 MGP_AJ_G0026148.1 mouse_genomes_project 2 93957202 95245908 + MGP_AJ_P0056367 Lrrc4c protein_coding protein_coding MGP_AJ_T0056368.1 MGP_AJ_G0026148.1 mouse_genomes_project 2 93957249 95245224 + MGP_AJ_P0056368 Lrrc4c protein_coding protein_coding MGP_AJ_T0056369.1 MGP_AJ_G0026148.1 mouse_genomes_project 2 95079051 95245906 + MGP_AJ_P0056369 Lrrc4c protein_coding protein_coding MGP_AJ_T0056370.1 MGP_AJ_G0026148.1 mouse_genomes_project 2 95079483 95243304 + MGP_AJ_P0056370 Lrrc4c protein_coding protein_coding MGP_AJ_T0017865.1 MGP_AJ_G0015445.1 mouse_genomes_project 2 127212312 127232663 - 9830144P21Rik processed_transcript processed_transcript MGP_AJ_T0017866.1 MGP_AJ_G0015445.1 mouse_genomes_project 2 127230416 127236791 - 9830144P21Rik processed_transcript processed_transcript MGP_AJ_T0055853.1 MGP_AJ_G0025991.1 mouse_genomes_project 2 85286359 85287295 - MGP_AJ_P0055853 Olfr1138 protein_coding protein_coding MGP_AJ_T0057262.1 MGP_AJ_G0026358.1 mouse_genomes_project 2 119317139 119337434 - MGP_AJ_P0057262 protein_coding protein_coding MGP_AJ_T0054137.1 MGP_AJ_G0025583.1 mouse_genomes_project 2 29542673 29552522 + MGP_AJ_P0054137 Ptges2 protein_coding protein_coding MGP_AJ_T0054138.1 MGP_AJ_G0025583.1 mouse_genomes_project 2 29543217 29547781 + MGP_AJ_P0054138 Ptges2 protein_coding nonsense_mediated_decay MGP_AJ_T0054139.1 MGP_AJ_G0025583.1 mouse_genomes_project 2 29544247 29548334 + Ptges2 protein_coding retained_intron MGP_AJ_T0059973.1 MGP_AJ_G0026999.1 mouse_genomes_project 2 180535889 180542920 + Tcea2 protein_coding retained_intron MGP_AJ_T0059974.1 MGP_AJ_G0026999.1 mouse_genomes_project 2 180535889 180543649 + MGP_AJ_P0059974 Tcea2 protein_coding protein_coding MGP_AJ_T0059975.1 MGP_AJ_G0026999.1 mouse_genomes_project 2 180536769 180543629 + MGP_AJ_P0059975 Tcea2 protein_coding protein_coding MGP_AJ_T0059976.1 MGP_AJ_G0026999.1 mouse_genomes_project 2 180538464 180543623 + MGP_AJ_P0059976 Tcea2 protein_coding protein_coding MGP_AJ_T0059977.1 MGP_AJ_G0026999.1 mouse_genomes_project 2 180538745 180541866 + Tcea2 protein_coding processed_transcript MGP_AJ_T0059978.1 MGP_AJ_G0026999.1 mouse_genomes_project 2 180539154 180543489 + Tcea2 protein_coding retained_intron MGP_AJ_T0059979.1 MGP_AJ_G0026999.1 mouse_genomes_project 2 180539180 180542507 + Tcea2 protein_coding retained_intron MGP_AJ_T0059980.1 MGP_AJ_G0026999.1 mouse_genomes_project 2 180543085 180543640 + Tcea2 protein_coding processed_transcript MGP_AJ_T0058862.1 MGP_AJ_G0026743.1 mouse_genomes_project 2 155645627 155707955 - MGP_AJ_P0058862 Rbl1 protein_coding protein_coding MGP_AJ_T0058863.1 MGP_AJ_G0026743.1 mouse_genomes_project 2 155668507 155707977 - Rbl1 protein_coding retained_intron MGP_AJ_T0058864.1 MGP_AJ_G0026743.1 mouse_genomes_project 2 155676304 155707969 - Rbl1 protein_coding retained_intron MGP_AJ_T0058865.1 MGP_AJ_G0026743.1 mouse_genomes_project 2 155691332 155695453 - Rbl1 protein_coding retained_intron MGP_AJ_T0053884.1 MGP_AJ_G0025549.1 mouse_genomes_project 2 27687289 27701812 + MGP_AJ_P0053884 Cstad protein_coding protein_coding MGP_AJ_T0053885.1 MGP_AJ_G0025549.1 mouse_genomes_project 2 27697518 27701086 + Cstad protein_coding processed_transcript MGP_AJ_T0004101.1 MGP_AJ_G0003627.1 mouse_genomes_project 2 130904474 130905732 - Gm14104 antisense antisense MGP_AJ_T0010434.1 MGP_AJ_G0008556.1 mouse_genomes_project 2 91822126 91822226 - Gm23630 miRNA miRNA MGP_AJ_T0011499.1 MGP_AJ_G0009621.1 mouse_genomes_project 2 42564120 42564321 + Vis1 misc_RNA misc_RNA MGP_AJ_T0058185.1 MGP_AJ_G0026582.1 mouse_genomes_project 2 146952129 146957510 + MGP_AJ_P0058185 Cst9 protein_coding protein_coding MGP_AJ_T0007194.1 MGP_AJ_G0005894.1 mouse_genomes_project 2 35645899 35677911 + Gm13589 lincRNA lincRNA MGP_AJ_T0010379.1 MGP_AJ_G0008501.1 mouse_genomes_project 2 22018255 22018322 - Gm24328 miRNA miRNA MGP_AJ_T0101773.1 MGP_AJ_G0039695.1 mouse_genomes_project 2 129896652 129896892 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0058363.1 MGP_AJ_G0026644.1 mouse_genomes_project 2 151075894 151127527 - MGP_AJ_P0058363 Bcl2l1 protein_coding protein_coding MGP_AJ_T0058364.1 MGP_AJ_G0026644.1 mouse_genomes_project 2 151075899 151126465 - MGP_AJ_P0058364 Bcl2l1 protein_coding protein_coding MGP_AJ_T0058365.1 MGP_AJ_G0026644.1 mouse_genomes_project 2 151076636 151124338 - Bcl2l1 protein_coding processed_transcript MGP_AJ_T0058366.1 MGP_AJ_G0026644.1 mouse_genomes_project 2 151123929 151126440 - MGP_AJ_P0058366 Bcl2l1 protein_coding protein_coding MGP_AJ_T0058367.1 MGP_AJ_G0026644.1 mouse_genomes_project 2 151124164 151126113 - MGP_AJ_P0058367 Bcl2l1 protein_coding protein_coding MGP_AJ_T0058368.1 MGP_AJ_G0026644.1 mouse_genomes_project 2 151125229 151126911 - MGP_AJ_P0058368 Bcl2l1 protein_coding protein_coding MGP_AJ_T0058369.1 MGP_AJ_G0026644.1 mouse_genomes_project 2 151125331 151126451 - MGP_AJ_P0058369 Bcl2l1 protein_coding protein_coding MGP_AJ_T0058370.1 MGP_AJ_G0026644.1 mouse_genomes_project 2 151125503 151126417 - MGP_AJ_P0058370 Bcl2l1 protein_coding protein_coding MGP_AJ_T0058371.1 MGP_AJ_G0026644.1 mouse_genomes_project 2 151125559 151127509 - MGP_AJ_P0058371 Bcl2l1 protein_coding protein_coding MGP_AJ_T0055795.1 MGP_AJ_G0025944.1 mouse_genomes_project 2 83911378 83912320 + MGP_AJ_P0055795 Olfr1076 protein_coding protein_coding MGP_AJ_T0055426.1 MGP_AJ_G0025829.1 mouse_genomes_project 2 72093075 72129221 + MGP_AJ_P0055426 Hoxd3 protein_coding protein_coding MGP_AJ_T0055431.1 MGP_AJ_G0025829.1 mouse_genomes_project 2 72113999 72125164 + MGP_AJ_P0055431 Hoxd3 protein_coding protein_coding MGP_AJ_T0055432.1 MGP_AJ_G0025829.1 mouse_genomes_project 2 72117479 72128865 + MGP_AJ_P0055432 Hoxd3 protein_coding protein_coding MGP_AJ_T0055433.1 MGP_AJ_G0025829.1 mouse_genomes_project 2 72120582 72128850 + MGP_AJ_P0055433 Hoxd3 protein_coding protein_coding MGP_AJ_T0055434.1 MGP_AJ_G0025829.1 mouse_genomes_project 2 72126623 72127546 + MGP_AJ_P0055434 Hoxd3 protein_coding protein_coding MGP_AJ_T0055435.1 MGP_AJ_G0025829.1 mouse_genomes_project 2 72126671 72129392 + Hoxd3 protein_coding retained_intron MGP_AJ_T0007208.1 MGP_AJ_G0005907.1 mouse_genomes_project 2 48757417 48775853 - 1700057H21Rik lincRNA lincRNA MGP_AJ_T0007209.1 MGP_AJ_G0005907.1 mouse_genomes_project 2 48757483 48775006 - 1700057H21Rik lincRNA lincRNA MGP_AJ_T0055827.1 MGP_AJ_G0025974.1 mouse_genomes_project 2 84863400 84864345 + MGP_AJ_P0055827 Olfr1121 protein_coding protein_coding MGP_AJ_T0004179.1 MGP_AJ_G0003690.1 mouse_genomes_project 2 171732811 171741705 - Gm14453 antisense antisense MGP_AJ_T0098951.1 MGP_AJ_G0036929.1 mouse_genomes_project 2 133727807 133728780 + Gm14209 sense_intronic sense_intronic MGP_AJ_T0055517.1 MGP_AJ_G0025850.1 mouse_genomes_project 2 74836162 75158577 - MGP_AJ_P0055517 Zfp385b protein_coding protein_coding MGP_AJ_T0055518.1 MGP_AJ_G0025850.1 mouse_genomes_project 2 74836162 74957811 - MGP_AJ_P0055518 Zfp385b protein_coding protein_coding MGP_AJ_T0055519.1 MGP_AJ_G0025850.1 mouse_genomes_project 2 74836162 75142340 - MGP_AJ_P0055519 Zfp385b protein_coding protein_coding MGP_AJ_T0055520.1 MGP_AJ_G0025850.1 mouse_genomes_project 2 74836628 75257441 - MGP_AJ_P0055520 Zfp385b protein_coding protein_coding MGP_AJ_T0055521.1 MGP_AJ_G0025850.1 mouse_genomes_project 2 74841442 74957807 - Zfp385b protein_coding processed_transcript MGP_AJ_T0055522.1 MGP_AJ_G0025850.1 mouse_genomes_project 2 74875776 75142340 - Zfp385b protein_coding processed_transcript MGP_AJ_T0055523.1 MGP_AJ_G0025850.1 mouse_genomes_project 2 74908469 74957728 - Zfp385b protein_coding processed_transcript MGP_AJ_T0055524.1 MGP_AJ_G0025850.1 mouse_genomes_project 2 74939843 75142447 - Zfp385b protein_coding processed_transcript MGP_AJ_T0055525.1 MGP_AJ_G0025850.1 mouse_genomes_project 2 74965484 75257884 - MGP_AJ_P0055525 Zfp385b protein_coding protein_coding MGP_AJ_T0055526.1 MGP_AJ_G0025850.1 mouse_genomes_project 2 74966235 74999827 - Zfp385b protein_coding processed_transcript MGP_AJ_T0055527.1 MGP_AJ_G0025850.1 mouse_genomes_project 2 75257861 75260260 - Zfp385b protein_coding processed_transcript MGP_AJ_T0055920.1 MGP_AJ_G0026051.1 mouse_genomes_project 2 86903579 86904598 - MGP_AJ_P0055920 Olfr1229 protein_coding protein_coding MGP_AJ_T0055921.1 MGP_AJ_G0026051.1 mouse_genomes_project 2 86903636 86909382 - MGP_AJ_P0055921 Olfr1229 protein_coding protein_coding MGP_AJ_T0003950.1 MGP_AJ_G0003523.1 mouse_genomes_project 2 29152308 29153009 - Gm13609 antisense antisense MGP_AJ_T0056935.1 MGP_AJ_G0026308.1 mouse_genomes_project 2 117419365 117454431 + MGP_AJ_P0056935 Nusap1 protein_coding protein_coding MGP_AJ_T0056936.1 MGP_AJ_G0026308.1 mouse_genomes_project 2 117419761 117438085 + Nusap1 protein_coding processed_transcript MGP_AJ_T0056937.1 MGP_AJ_G0026308.1 mouse_genomes_project 2 117419784 117455851 + MGP_AJ_P0056937 Nusap1 protein_coding protein_coding MGP_AJ_T0056938.1 MGP_AJ_G0026308.1 mouse_genomes_project 2 117419796 117431394 + Nusap1 protein_coding processed_transcript MGP_AJ_T0055866.1 MGP_AJ_G0026003.1 mouse_genomes_project 2 85472627 85473600 - MGP_AJ_P0055866 Olfr1156 protein_coding protein_coding MGP_AJ_T0054517.1 MGP_AJ_G0025662.1 mouse_genomes_project 2 34275392 34278904 + MGP_AJ_P0054517 Olfr360 protein_coding protein_coding MGP_AJ_T0054518.1 MGP_AJ_G0025662.1 mouse_genomes_project 2 34277950 34278904 + MGP_AJ_P0054518 Olfr360 protein_coding protein_coding MGP_AJ_T0003985.1 MGP_AJ_G0003549.1 mouse_genomes_project 2 60124030 60125585 + Gm13569 antisense antisense MGP_AJ_T0013747.1 MGP_AJ_G0011842.1 mouse_genomes_project 2 125585009 125594420 + processed_pseudogene processed_pseudogene MGP_AJ_T0059583.1 MGP_AJ_G0026918.1 mouse_genomes_project 2 171707247 171722870 + MGP_AJ_P0059583 Rae1 protein_coding protein_coding MGP_AJ_T0059584.1 MGP_AJ_G0026918.1 mouse_genomes_project 2 171707254 171716566 + MGP_AJ_P0059584 Rae1 protein_coding protein_coding MGP_AJ_T0059585.1 MGP_AJ_G0026918.1 mouse_genomes_project 2 171713746 171716565 + Rae1 protein_coding retained_intron MGP_AJ_T0059586.1 MGP_AJ_G0026918.1 mouse_genomes_project 2 171718781 171719940 + Rae1 protein_coding retained_intron MGP_AJ_T0059587.1 MGP_AJ_G0026918.1 mouse_genomes_project 2 171719579 171722558 + Rae1 protein_coding retained_intron MGP_AJ_T0099785.1 MGP_AJ_G0037751.1 mouse_genomes_project 2 126088696 126088833 + Gm23101 snRNA snRNA MGP_AJ_T0056402.1 MGP_AJ_G0026156.1 mouse_genomes_project 2 99927090 100028234 - MGP_AJ_P0056402 Trim44 protein_coding protein_coding MGP_AJ_T0056403.1 MGP_AJ_G0026156.1 mouse_genomes_project 2 99931457 100027592 - MGP_AJ_P0056403 Trim44 protein_coding protein_coding MGP_AJ_T0056404.1 MGP_AJ_G0026156.1 mouse_genomes_project 2 99985211 100035177 - MGP_AJ_P0056404 Trim44 protein_coding protein_coding MGP_AJ_T0004001.1 MGP_AJ_G0003563.1 mouse_genomes_project 2 67808733 67814440 - Erich2os antisense antisense MGP_AJ_T0058192.1 MGP_AJ_G0026586.1 mouse_genomes_project 2 147153617 147155051 - MGP_AJ_P0058192 Gm10750 protein_coding protein_coding MGP_AJ_T0007182.1 MGP_AJ_G0005886.1 mouse_genomes_project 2 31122917 31129247 - Gm13403 lincRNA lincRNA MGP_AJ_T0007183.1 MGP_AJ_G0005886.1 mouse_genomes_project 2 31125028 31129279 - Gm13403 lincRNA lincRNA MGP_AJ_T0054140.1 MGP_AJ_G0025584.1 mouse_genomes_project 2 29561578 29578210 - MGP_AJ_P0054140 Slc25a25 protein_coding protein_coding MGP_AJ_T0054141.1 MGP_AJ_G0025584.1 mouse_genomes_project 2 29561578 29598194 - MGP_AJ_P0054141 Slc25a25 protein_coding protein_coding MGP_AJ_T0054142.1 MGP_AJ_G0025584.1 mouse_genomes_project 2 29561581 29598217 - MGP_AJ_P0054142 Slc25a25 protein_coding protein_coding MGP_AJ_T0054143.1 MGP_AJ_G0025584.1 mouse_genomes_project 2 29562061 29577843 - MGP_AJ_P0054143 Slc25a25 protein_coding protein_coding MGP_AJ_T0054144.1 MGP_AJ_G0025584.1 mouse_genomes_project 2 29562151 29571097 - MGP_AJ_P0054144 Slc25a25 protein_coding protein_coding MGP_AJ_T0054145.1 MGP_AJ_G0025584.1 mouse_genomes_project 2 29563300 29563663 - Slc25a25 protein_coding retained_intron MGP_AJ_T0054146.1 MGP_AJ_G0025584.1 mouse_genomes_project 2 29564183 29567542 - Slc25a25 protein_coding retained_intron MGP_AJ_T0054147.1 MGP_AJ_G0025584.1 mouse_genomes_project 2 29564263 29564922 - Slc25a25 protein_coding retained_intron MGP_AJ_T0054148.1 MGP_AJ_G0025584.1 mouse_genomes_project 2 29564509 29578196 - MGP_AJ_P0054148 Slc25a25 protein_coding protein_coding MGP_AJ_T0054149.1 MGP_AJ_G0025584.1 mouse_genomes_project 2 29566139 29569072 - MGP_AJ_P0054149 Slc25a25 protein_coding protein_coding MGP_AJ_T0054150.1 MGP_AJ_G0025584.1 mouse_genomes_project 2 29566221 29578195 - MGP_AJ_P0054150 Slc25a25 protein_coding protein_coding MGP_AJ_T0054151.1 MGP_AJ_G0025584.1 mouse_genomes_project 2 29574439 29578260 - Slc25a25 protein_coding retained_intron MGP_AJ_T0001092.1 MGP_AJ_G0001021.1 mouse_genomes_project 2 93513256 93534055 + TEC TEC MGP_AJ_T0057649.1 MGP_AJ_G0026455.1 mouse_genomes_project 2 127693098 127706366 - MGP_AJ_P0057649 Pdyn protein_coding protein_coding MGP_AJ_T0057650.1 MGP_AJ_G0026455.1 mouse_genomes_project 2 127695029 127705191 - MGP_AJ_P0057650 Pdyn protein_coding protein_coding MGP_AJ_T0057651.1 MGP_AJ_G0026455.1 mouse_genomes_project 2 127704518 127706377 - Pdyn protein_coding retained_intron MGP_AJ_T0007264.1 MGP_AJ_G0005954.1 mouse_genomes_project 2 89674507 89728005 - lincRNA lincRNA MGP_AJ_T0055856.1 MGP_AJ_G0025994.1 mouse_genomes_project 2 85329874 85330825 + MGP_AJ_P0055856 Olfr152 protein_coding protein_coding MGP_AJ_T0055857.1 MGP_AJ_G0025994.1 mouse_genomes_project 2 85329880 85330825 + MGP_AJ_P0055857 Olfr152 protein_coding protein_coding MGP_AJ_T0055130.1 MGP_AJ_G0025771.1 mouse_genomes_project 2 66406709 66463681 + MGP_AJ_P0055130 Nostrin protein_coding protein_coding MGP_AJ_T0055131.1 MGP_AJ_G0025771.1 mouse_genomes_project 2 66453533 66459880 + Nostrin protein_coding processed_transcript MGP_AJ_T0054529.1 MGP_AJ_G0025670.1 mouse_genomes_project 2 34587906 34637680 - MGP_AJ_P0054529 Rc3h2 protein_coding nonsense_mediated_decay MGP_AJ_T0054530.1 MGP_AJ_G0025670.1 mouse_genomes_project 2 34590001 34637615 - MGP_AJ_P0054530 Rc3h2 protein_coding protein_coding MGP_AJ_T0054531.1 MGP_AJ_G0025670.1 mouse_genomes_project 2 34591628 34592340 - Rc3h2 protein_coding retained_intron MGP_AJ_T0054532.1 MGP_AJ_G0025670.1 mouse_genomes_project 2 34592556 34596011 - Rc3h2 protein_coding retained_intron MGP_AJ_T0054533.1 MGP_AJ_G0025670.1 mouse_genomes_project 2 34603713 34605949 - Rc3h2 protein_coding retained_intron MGP_AJ_T0054534.1 MGP_AJ_G0025670.1 mouse_genomes_project 2 34611667 34614419 - Rc3h2 protein_coding retained_intron MGP_AJ_T0054535.1 MGP_AJ_G0025670.1 mouse_genomes_project 2 34624370 34629538 - Rc3h2 protein_coding processed_transcript MGP_AJ_T0054536.1 MGP_AJ_G0025670.1 mouse_genomes_project 2 34628334 34631813 - Rc3h2 protein_coding retained_intron MGP_AJ_T0055662.1 MGP_AJ_G0025875.1 mouse_genomes_project 2 81977462 82063088 - MGP_AJ_P0055662 protein_coding protein_coding MGP_AJ_T0102505.1 MGP_AJ_G0040247.1 mouse_genomes_project 2 87888085 87889010 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0013850.1 MGP_AJ_G0011945.1 mouse_genomes_project 2 156917403 156917692 - processed_pseudogene processed_pseudogene MGP_AJ_T0011488.1 MGP_AJ_G0009610.1 mouse_genomes_project 2 17589915 17590004 + Gm27446 misc_RNA misc_RNA MGP_AJ_T0098439.1 MGP_AJ_G0036423.1 mouse_genomes_project 2 89545677 89546077 - pseudogene pseudogene MGP_AJ_T0013692.1 MGP_AJ_G0011787.1 mouse_genomes_project 2 101468377 101468794 - processed_pseudogene processed_pseudogene MGP_AJ_T0055880.1 MGP_AJ_G0026016.1 mouse_genomes_project 2 86022469 86023393 - MGP_AJ_P0055880 Olfr1179 protein_coding protein_coding MGP_AJ_T0054005.1 MGP_AJ_G0025567.1 mouse_genomes_project 2 28807504 28817843 + Abl1 protein_coding retained_intron MGP_AJ_T0054006.1 MGP_AJ_G0025567.1 mouse_genomes_project 2 28807665 28827081 + Abl1 protein_coding processed_transcript MGP_AJ_T0054007.1 MGP_AJ_G0025567.1 mouse_genomes_project 2 28807679 28932109 + MGP_AJ_P0054007 Abl1 protein_coding protein_coding MGP_AJ_T0054008.1 MGP_AJ_G0025567.1 mouse_genomes_project 2 28807680 28928907 + MGP_AJ_P0054008 Abl1 protein_coding nonsense_mediated_decay MGP_AJ_T0054009.1 MGP_AJ_G0025567.1 mouse_genomes_project 2 28808593 28906952 + MGP_AJ_P0054009 Abl1 protein_coding protein_coding MGP_AJ_T0054010.1 MGP_AJ_G0025567.1 mouse_genomes_project 2 28808739 28907584 + MGP_AJ_P0054010 Abl1 protein_coding nonsense_mediated_decay MGP_AJ_T0054011.1 MGP_AJ_G0025567.1 mouse_genomes_project 2 28888513 28932795 + MGP_AJ_P0054011 Abl1 protein_coding protein_coding MGP_AJ_T0054012.1 MGP_AJ_G0025567.1 mouse_genomes_project 2 28888743 28907584 + MGP_AJ_P0054012 Abl1 protein_coding protein_coding MGP_AJ_T0054013.1 MGP_AJ_G0025567.1 mouse_genomes_project 2 28918734 28923130 + Abl1 protein_coding retained_intron MGP_AJ_T0054014.1 MGP_AJ_G0025567.1 mouse_genomes_project 2 28925213 28926560 + Abl1 protein_coding retained_intron MGP_AJ_T0058698.1 MGP_AJ_G0026719.1 mouse_genomes_project 2 154489106 154523501 - MGP_AJ_P0058698 Fer1l4 protein_coding protein_coding MGP_AJ_T0058699.1 MGP_AJ_G0026719.1 mouse_genomes_project 2 154489107 154494844 - Fer1l4 protein_coding retained_intron MGP_AJ_T0058700.1 MGP_AJ_G0026719.1 mouse_genomes_project 2 154489108 154507111 - Fer1l4 protein_coding retained_intron MGP_AJ_T0058701.1 MGP_AJ_G0026719.1 mouse_genomes_project 2 154499141 154501952 - MGP_AJ_P0058701 Fer1l4 protein_coding protein_coding MGP_AJ_T0058702.1 MGP_AJ_G0026719.1 mouse_genomes_project 2 154499290 154501954 - Fer1l4 protein_coding retained_intron MGP_AJ_T0058703.1 MGP_AJ_G0026719.1 mouse_genomes_project 2 154505485 154507846 - MGP_AJ_P0058703 Fer1l4 protein_coding nonsense_mediated_decay MGP_AJ_T0060002.1 MGP_AJ_G0027003.1 mouse_genomes_project 2 180612765 180679301 + MGP_AJ_P0060002 Myt1 protein_coding protein_coding MGP_AJ_T0060003.1 MGP_AJ_G0027003.1 mouse_genomes_project 2 180612829 180677547 + MGP_AJ_P0060003 Myt1 protein_coding protein_coding MGP_AJ_T0060004.1 MGP_AJ_G0027003.1 mouse_genomes_project 2 180616465 180647528 + Myt1 protein_coding processed_transcript MGP_AJ_T0060005.1 MGP_AJ_G0027003.1 mouse_genomes_project 2 180616739 180656543 + MGP_AJ_P0060005 Myt1 protein_coding nonsense_mediated_decay MGP_AJ_T0060006.1 MGP_AJ_G0027003.1 mouse_genomes_project 2 180634205 180667140 + MGP_AJ_P0060006 Myt1 protein_coding protein_coding MGP_AJ_T0060007.1 MGP_AJ_G0027003.1 mouse_genomes_project 2 180647942 180679236 + Myt1 protein_coding retained_intron MGP_AJ_T0060008.1 MGP_AJ_G0027003.1 mouse_genomes_project 2 180649233 180658074 + Myt1 protein_coding processed_transcript MGP_AJ_T0060009.1 MGP_AJ_G0027003.1 mouse_genomes_project 2 180662731 180671633 + MGP_AJ_P0060009 Myt1 protein_coding protein_coding MGP_AJ_T0060010.1 MGP_AJ_G0027003.1 mouse_genomes_project 2 180671092 180673531 + Myt1 protein_coding retained_intron MGP_AJ_T0013451.1 MGP_AJ_G0011546.1 mouse_genomes_project 2 16684058 16684163 - processed_pseudogene processed_pseudogene MGP_AJ_T0001037.1 MGP_AJ_G0000968.1 mouse_genomes_project 2 10097643 10099256 + TEC TEC MGP_AJ_T0013478.1 MGP_AJ_G0011573.1 mouse_genomes_project 2 28027118 28027498 - processed_pseudogene processed_pseudogene MGP_AJ_T0010467.1 MGP_AJ_G0008589.1 mouse_genomes_project 2 154079025 154079104 + Mir499 miRNA miRNA MGP_AJ_T0057393.1 MGP_AJ_G0026390.1 mouse_genomes_project 2 123199958 123210913 + MGP_AJ_P0057393 Dut protein_coding protein_coding MGP_AJ_T0057394.1 MGP_AJ_G0026390.1 mouse_genomes_project 2 123200250 123211773 + MGP_AJ_P0057394 Dut protein_coding protein_coding MGP_AJ_T0057395.1 MGP_AJ_G0026390.1 mouse_genomes_project 2 123200668 123201782 + Dut protein_coding processed_transcript MGP_AJ_T0004128.1 MGP_AJ_G0003648.1 mouse_genomes_project 2 150357112 150359066 - AA387200 antisense antisense MGP_AJ_T0054625.1 MGP_AJ_G0025688.1 mouse_genomes_project 2 36319035 36445004 - MGP_AJ_P0054625 Scai protein_coding protein_coding MGP_AJ_T0054626.1 MGP_AJ_G0025688.1 mouse_genomes_project 2 36327586 36444975 - MGP_AJ_P0054626 Scai protein_coding nonsense_mediated_decay MGP_AJ_T0054627.1 MGP_AJ_G0025688.1 mouse_genomes_project 2 36327828 36444962 - MGP_AJ_P0054627 Scai protein_coding nonsense_mediated_decay MGP_AJ_T0054628.1 MGP_AJ_G0025688.1 mouse_genomes_project 2 36327893 36353195 - MGP_AJ_P0054628 Scai protein_coding nonsense_mediated_decay MGP_AJ_T0054629.1 MGP_AJ_G0025688.1 mouse_genomes_project 2 36333195 36445000 - MGP_AJ_P0054629 Scai protein_coding nonsense_mediated_decay MGP_AJ_T0054630.1 MGP_AJ_G0025688.1 mouse_genomes_project 2 36355203 36445004 - Scai protein_coding retained_intron MGP_AJ_T0054631.1 MGP_AJ_G0025688.1 mouse_genomes_project 2 36357267 36445000 - Scai protein_coding retained_intron MGP_AJ_T0054632.1 MGP_AJ_G0025688.1 mouse_genomes_project 2 36360494 36362549 - Scai protein_coding retained_intron MGP_AJ_T0054633.1 MGP_AJ_G0025688.1 mouse_genomes_project 2 36360643 36374928 - Scai protein_coding retained_intron MGP_AJ_T0054634.1 MGP_AJ_G0025688.1 mouse_genomes_project 2 36386329 36444998 - MGP_AJ_P0054634 Scai protein_coding protein_coding MGP_AJ_T0007422.1 MGP_AJ_G0006083.1 mouse_genomes_project 2 168289317 168547148 - lincRNA lincRNA MGP_AJ_T0007423.1 MGP_AJ_G0006083.1 mouse_genomes_project 2 168289347 168547148 - lincRNA lincRNA MGP_AJ_T0059919.1 MGP_AJ_G0026991.1 mouse_genomes_project 2 180344409 180346184 + MGP_AJ_P0059919 Abhd16b protein_coding protein_coding MGP_AJ_T0059666.1 MGP_AJ_G0026940.1 mouse_genomes_project 2 173954736 173961371 - MGP_AJ_P0059666 protein_coding protein_coding MGP_AJ_T0059263.1 MGP_AJ_G0026851.1 mouse_genomes_project 2 163501275 163503233 + MGP_AJ_P0059263 Slc12a5 protein_coding nonsense_mediated_decay MGP_AJ_T0059264.1 MGP_AJ_G0026851.1 mouse_genomes_project 2 163501289 163514976 + Slc12a5 protein_coding processed_transcript MGP_AJ_T0059265.1 MGP_AJ_G0026851.1 mouse_genomes_project 2 163501297 163539712 + MGP_AJ_P0059265 Slc12a5 protein_coding protein_coding MGP_AJ_T0059266.1 MGP_AJ_G0026851.1 mouse_genomes_project 2 163501319 163541847 + MGP_AJ_P0059266 Slc12a5 protein_coding protein_coding MGP_AJ_T0059267.1 MGP_AJ_G0026851.1 mouse_genomes_project 2 163508455 163541856 + MGP_AJ_P0059267 Slc12a5 protein_coding protein_coding MGP_AJ_T0059268.1 MGP_AJ_G0026851.1 mouse_genomes_project 2 163508711 163541852 + MGP_AJ_P0059268 Slc12a5 protein_coding protein_coding MGP_AJ_T0059269.1 MGP_AJ_G0026851.1 mouse_genomes_project 2 163508753 163530867 + MGP_AJ_P0059269 Slc12a5 protein_coding nonsense_mediated_decay MGP_AJ_T0059270.1 MGP_AJ_G0026851.1 mouse_genomes_project 2 163523010 163527229 + Slc12a5 protein_coding retained_intron MGP_AJ_T0059271.1 MGP_AJ_G0026851.1 mouse_genomes_project 2 163538733 163541847 + Slc12a5 protein_coding retained_intron MGP_AJ_T0057694.1 MGP_AJ_G0026467.1 mouse_genomes_project 2 128445718 128447143 + MGP_AJ_P0057694 Tmem239 protein_coding protein_coding MGP_AJ_T0053575.1 MGP_AJ_G0025504.1 mouse_genomes_project 2 25619226 25637076 - MGP_AJ_P0053575 Gtf3c5 protein_coding protein_coding MGP_AJ_T0053576.1 MGP_AJ_G0025504.1 mouse_genomes_project 2 25619226 25636986 - MGP_AJ_P0053576 Gtf3c5 protein_coding protein_coding MGP_AJ_T0053577.1 MGP_AJ_G0025504.1 mouse_genomes_project 2 25621671 25624971 - Gtf3c5 protein_coding retained_intron MGP_AJ_T0053578.1 MGP_AJ_G0025504.1 mouse_genomes_project 2 25626029 25627705 - Gtf3c5 protein_coding retained_intron MGP_AJ_T0053579.1 MGP_AJ_G0025504.1 mouse_genomes_project 2 25632836 25637064 - Gtf3c5 protein_coding retained_intron MGP_AJ_T0053580.1 MGP_AJ_G0025504.1 mouse_genomes_project 2 25633369 25636785 - MGP_AJ_P0053580 Gtf3c5 protein_coding nonsense_mediated_decay MGP_AJ_T0053581.1 MGP_AJ_G0025504.1 mouse_genomes_project 2 25636801 25637548 - Gtf3c5 protein_coding processed_transcript MGP_AJ_T0013470.1 MGP_AJ_G0011565.1 mouse_genomes_project 2 22541581 22541822 - processed_pseudogene processed_pseudogene MGP_AJ_T0058348.1 MGP_AJ_G0026638.1 mouse_genomes_project 2 150912496 150913194 - MGP_AJ_P0058348 Defb25 protein_coding protein_coding MGP_AJ_T0056339.1 MGP_AJ_G0026142.1 mouse_genomes_project 2 91596661 91597899 - MGP_AJ_P0056339 protein_coding protein_coding MGP_AJ_T0056340.1 MGP_AJ_G0026142.1 mouse_genomes_project 2 91596667 91598051 - MGP_AJ_P0056340 protein_coding protein_coding MGP_AJ_T0059228.1 MGP_AJ_G0026846.1 mouse_genomes_project 2 163371818 163379808 + MGP_AJ_P0059228 Ctsa protein_coding protein_coding MGP_AJ_T0059229.1 MGP_AJ_G0026846.1 mouse_genomes_project 2 163371818 163378749 + MGP_AJ_P0059229 Ctsa protein_coding protein_coding MGP_AJ_T0059230.1 MGP_AJ_G0026846.1 mouse_genomes_project 2 163371832 163372705 + Ctsa protein_coding processed_transcript MGP_AJ_T0059231.1 MGP_AJ_G0026846.1 mouse_genomes_project 2 163371846 163379808 + MGP_AJ_P0059231 Ctsa protein_coding protein_coding MGP_AJ_T0059232.1 MGP_AJ_G0026846.1 mouse_genomes_project 2 163371854 163373008 + MGP_AJ_P0059232 Ctsa protein_coding protein_coding MGP_AJ_T0059233.1 MGP_AJ_G0026846.1 mouse_genomes_project 2 163371871 163372725 + Ctsa protein_coding processed_transcript MGP_AJ_T0059234.1 MGP_AJ_G0026846.1 mouse_genomes_project 2 163371871 163374637 + MGP_AJ_P0059234 Ctsa protein_coding protein_coding MGP_AJ_T0059235.1 MGP_AJ_G0026846.1 mouse_genomes_project 2 163372752 163373367 + Ctsa protein_coding retained_intron MGP_AJ_T0059236.1 MGP_AJ_G0026846.1 mouse_genomes_project 2 163372760 163375734 + MGP_AJ_P0059236 Ctsa protein_coding protein_coding MGP_AJ_T0059237.1 MGP_AJ_G0026846.1 mouse_genomes_project 2 163372792 163373820 + Ctsa protein_coding retained_intron MGP_AJ_T0059238.1 MGP_AJ_G0026846.1 mouse_genomes_project 2 163372803 163375209 + MGP_AJ_P0059238 Ctsa protein_coding protein_coding MGP_AJ_T0059239.1 MGP_AJ_G0026846.1 mouse_genomes_project 2 163372975 163374139 + Ctsa protein_coding retained_intron MGP_AJ_T0059240.1 MGP_AJ_G0026846.1 mouse_genomes_project 2 163372975 163375767 + Ctsa protein_coding retained_intron MGP_AJ_T0059241.1 MGP_AJ_G0026846.1 mouse_genomes_project 2 163373018 163375204 + Ctsa protein_coding retained_intron MGP_AJ_T0059242.1 MGP_AJ_G0026846.1 mouse_genomes_project 2 163373255 163374667 + Ctsa protein_coding processed_transcript MGP_AJ_T0059243.1 MGP_AJ_G0026846.1 mouse_genomes_project 2 163373418 163374415 + Ctsa protein_coding retained_intron MGP_AJ_T0059244.1 MGP_AJ_G0026846.1 mouse_genomes_project 2 163375913 163376390 + Ctsa protein_coding retained_intron MGP_AJ_T0056658.1 MGP_AJ_G0026209.1 mouse_genomes_project 2 108359396 108377973 + MGP_AJ_P0056658 Muc15 protein_coding protein_coding MGP_AJ_T0056659.1 MGP_AJ_G0026209.1 mouse_genomes_project 2 108359667 108377973 + MGP_AJ_P0056659 Muc15 protein_coding protein_coding MGP_AJ_T0056660.1 MGP_AJ_G0026209.1 mouse_genomes_project 2 108359704 108376043 + MGP_AJ_P0056660 Muc15 protein_coding protein_coding MGP_AJ_T0056741.1 MGP_AJ_G0026259.1 mouse_genomes_project 2 111523413 111571919 - MGP_AJ_P0056741 Scg5 protein_coding protein_coding MGP_AJ_T0056742.1 MGP_AJ_G0026259.1 mouse_genomes_project 2 111570136 111571560 - Scg5 protein_coding processed_transcript MGP_AJ_T0059494.1 MGP_AJ_G0026894.1 mouse_genomes_project 2 167112821 167226635 - MGP_AJ_P0059494 Nfatc2 protein_coding protein_coding MGP_AJ_T0059495.1 MGP_AJ_G0026894.1 mouse_genomes_project 2 167112821 167226530 - MGP_AJ_P0059495 Nfatc2 protein_coding protein_coding MGP_AJ_T0059496.1 MGP_AJ_G0026894.1 mouse_genomes_project 2 167112824 167188526 - Nfatc2 protein_coding processed_transcript MGP_AJ_T0059497.1 MGP_AJ_G0026894.1 mouse_genomes_project 2 167154549 167238475 - Nfatc2 protein_coding processed_transcript MGP_AJ_T0059498.1 MGP_AJ_G0026894.1 mouse_genomes_project 2 167155453 167238500 - MGP_AJ_P0059498 Nfatc2 protein_coding protein_coding MGP_AJ_T0059499.1 MGP_AJ_G0026894.1 mouse_genomes_project 2 167155739 167226461 - MGP_AJ_P0059499 Nfatc2 protein_coding protein_coding MGP_AJ_T0059500.1 MGP_AJ_G0026894.1 mouse_genomes_project 2 167169818 167226601 - Nfatc2 protein_coding retained_intron MGP_AJ_T0059501.1 MGP_AJ_G0026894.1 mouse_genomes_project 2 167202718 167226635 - Nfatc2 protein_coding retained_intron MGP_AJ_T0010419.1 MGP_AJ_G0008541.1 mouse_genomes_project 2 72082306 72082443 - Gm44463 miRNA miRNA MGP_AJ_T0098945.1 MGP_AJ_G0036923.1 mouse_genomes_project 2 3927256 3929797 - Gm10855 sense_intronic sense_intronic MGP_AJ_T0007156.1 MGP_AJ_G0005867.1 mouse_genomes_project 2 18136491 18161044 + Gm13376 lincRNA lincRNA MGP_AJ_T0004124.1 MGP_AJ_G0003645.1 mouse_genomes_project 2 149961750 149968729 - Tmem74bos antisense antisense MGP_AJ_T0004125.1 MGP_AJ_G0003645.1 mouse_genomes_project 2 149963303 149968453 - Tmem74bos antisense antisense MGP_AJ_T0007297.1 MGP_AJ_G0005980.1 mouse_genomes_project 2 108691478 108697729 - Gm13942 lincRNA lincRNA MGP_AJ_T0010381.1 MGP_AJ_G0008503.1 mouse_genomes_project 2 22426404 22426460 + Mir3087 miRNA miRNA MGP_AJ_T0007236.1 MGP_AJ_G0005930.1 mouse_genomes_project 2 71496574 71498066 - A630050E04Rik lincRNA lincRNA MGP_AJ_T0052632.1 MGP_AJ_G0025329.1 mouse_genomes_project 2 10010954 10086036 + MGP_AJ_P0052632 Pter protein_coding protein_coding MGP_AJ_T0052633.1 MGP_AJ_G0025329.1 mouse_genomes_project 2 10010975 10065109 + Pter protein_coding processed_transcript MGP_AJ_T0052634.1 MGP_AJ_G0025329.1 mouse_genomes_project 2 10010982 10086037 + MGP_AJ_P0052634 Pter protein_coding protein_coding MGP_AJ_T0052635.1 MGP_AJ_G0025329.1 mouse_genomes_project 2 10011005 10088511 + MGP_AJ_P0052635 Pter protein_coding protein_coding MGP_AJ_T0052636.1 MGP_AJ_G0025329.1 mouse_genomes_project 2 10011013 10086670 + MGP_AJ_P0052636 Pter protein_coding protein_coding MGP_AJ_T0052637.1 MGP_AJ_G0025329.1 mouse_genomes_project 2 10011014 10066488 + Pter protein_coding processed_transcript MGP_AJ_T0052638.1 MGP_AJ_G0025329.1 mouse_genomes_project 2 10062518 10086915 + Pter protein_coding retained_intron MGP_AJ_T0007332.1 MGP_AJ_G0006008.1 mouse_genomes_project 2 127225193 127241818 + A730036I17Rik lincRNA lincRNA MGP_AJ_T0007333.1 MGP_AJ_G0006008.1 mouse_genomes_project 2 127225252 127239464 + A730036I17Rik lincRNA lincRNA MGP_AJ_T0007334.1 MGP_AJ_G0006008.1 mouse_genomes_project 2 127234241 127238181 + A730036I17Rik lincRNA lincRNA MGP_AJ_T0059272.1 MGP_AJ_G0026852.1 mouse_genomes_project 2 163542481 163577001 - MGP_AJ_P0059272 Ncoa5 protein_coding protein_coding MGP_AJ_T0059273.1 MGP_AJ_G0026852.1 mouse_genomes_project 2 163542484 163576951 - MGP_AJ_P0059273 Ncoa5 protein_coding protein_coding MGP_AJ_T0059274.1 MGP_AJ_G0026852.1 mouse_genomes_project 2 163542487 163576922 - MGP_AJ_P0059274 Ncoa5 protein_coding protein_coding MGP_AJ_T0059275.1 MGP_AJ_G0026852.1 mouse_genomes_project 2 163544798 163546781 - Ncoa5 protein_coding retained_intron MGP_AJ_T0059276.1 MGP_AJ_G0026852.1 mouse_genomes_project 2 163552221 163576937 - Ncoa5 protein_coding retained_intron MGP_AJ_T0059277.1 MGP_AJ_G0026852.1 mouse_genomes_project 2 163555363 163576963 - MGP_AJ_P0059277 Ncoa5 protein_coding protein_coding MGP_AJ_T0059278.1 MGP_AJ_G0026852.1 mouse_genomes_project 2 163565031 163565573 - Ncoa5 protein_coding processed_transcript MGP_AJ_T0059279.1 MGP_AJ_G0026852.1 mouse_genomes_project 2 163565301 163576921 - Ncoa5 protein_coding retained_intron MGP_AJ_T0058816.1 MGP_AJ_G0026733.1 mouse_genomes_project 2 155261161 155267893 + MGP_AJ_P0058816 Myl9 protein_coding protein_coding MGP_AJ_T0058817.1 MGP_AJ_G0026733.1 mouse_genomes_project 2 155261195 155267596 + Myl9 protein_coding processed_transcript MGP_AJ_T0058818.1 MGP_AJ_G0026733.1 mouse_genomes_project 2 155261198 155266769 + Myl9 protein_coding processed_transcript MGP_AJ_T0058819.1 MGP_AJ_G0026733.1 mouse_genomes_project 2 155264751 155267399 + Myl9 protein_coding processed_transcript MGP_AJ_T0099803.1 MGP_AJ_G0037769.1 mouse_genomes_project 2 180033871 180033975 + Gm24892 snRNA snRNA MGP_AJ_T0055553.1 MGP_AJ_G0025854.1 mouse_genomes_project 2 76783991 76792099 - MGP_AJ_P0055553 Cerkl protein_coding protein_coding MGP_AJ_T0055554.1 MGP_AJ_G0025854.1 mouse_genomes_project 2 76785200 76888952 - Cerkl protein_coding processed_transcript MGP_AJ_T0055555.1 MGP_AJ_G0025854.1 mouse_genomes_project 2 76785950 76787174 - Cerkl protein_coding processed_transcript MGP_AJ_T0055556.1 MGP_AJ_G0025854.1 mouse_genomes_project 2 76785978 76888889 - MGP_AJ_P0055556 Cerkl protein_coding protein_coding MGP_AJ_T0055557.1 MGP_AJ_G0025854.1 mouse_genomes_project 2 76786041 76888905 - Cerkl protein_coding processed_transcript MGP_AJ_T0055558.1 MGP_AJ_G0025854.1 mouse_genomes_project 2 76786041 76888889 - Cerkl protein_coding processed_transcript MGP_AJ_T0055559.1 MGP_AJ_G0025854.1 mouse_genomes_project 2 76786043 76888995 - Cerkl protein_coding processed_transcript MGP_AJ_T0055560.1 MGP_AJ_G0025854.1 mouse_genomes_project 2 76792064 76915854 - Cerkl protein_coding processed_transcript MGP_AJ_T0055561.1 MGP_AJ_G0025854.1 mouse_genomes_project 2 76797463 76826776 - Cerkl protein_coding processed_transcript MGP_AJ_T0055562.1 MGP_AJ_G0025854.1 mouse_genomes_project 2 76809045 76826801 - Cerkl protein_coding processed_transcript MGP_AJ_T0055563.1 MGP_AJ_G0025854.1 mouse_genomes_project 2 76843381 76847007 - Cerkl protein_coding processed_transcript MGP_AJ_T0055564.1 MGP_AJ_G0025854.1 mouse_genomes_project 2 76844715 76848894 - Cerkl protein_coding processed_transcript MGP_AJ_T0058605.1 MGP_AJ_G0026703.1 mouse_genomes_project 2 154018776 154048713 - MGP_AJ_P0058605 Gss protein_coding protein_coding MGP_AJ_T0058606.1 MGP_AJ_G0026703.1 mouse_genomes_project 2 154019088 154028678 - MGP_AJ_P0058606 Gss protein_coding protein_coding MGP_AJ_T0058607.1 MGP_AJ_G0026703.1 mouse_genomes_project 2 154019810 154030057 - Gss protein_coding retained_intron MGP_AJ_T0058610.1 MGP_AJ_G0026703.1 mouse_genomes_project 2 154028638 154038385 - MGP_AJ_P0058610 Gss protein_coding protein_coding MGP_AJ_T0058611.1 MGP_AJ_G0026703.1 mouse_genomes_project 2 154032459 154048689 - Gss protein_coding processed_transcript MGP_AJ_T0058612.1 MGP_AJ_G0026703.1 mouse_genomes_project 2 154033195 154043434 - Gss protein_coding retained_intron MGP_AJ_T0058613.1 MGP_AJ_G0026703.1 mouse_genomes_project 2 154033266 154048529 - MGP_AJ_P0058613 Gss protein_coding protein_coding MGP_AJ_T0058614.1 MGP_AJ_G0026703.1 mouse_genomes_project 2 154033978 154038377 - Gss protein_coding processed_transcript MGP_AJ_T0013611.1 MGP_AJ_G0011706.1 mouse_genomes_project 2 75946586 75947225 - processed_pseudogene processed_pseudogene MGP_AJ_T0007342.1 MGP_AJ_G0006015.1 mouse_genomes_project 2 133707071 133710238 + Platr3 lincRNA lincRNA MGP_AJ_T0053090.1 MGP_AJ_G0025413.1 mouse_genomes_project 2 22267436 22268479 + MGP_AJ_P0053090 Tmem210 protein_coding protein_coding MGP_AJ_T0053091.1 MGP_AJ_G0025413.1 mouse_genomes_project 2 22267492 22268481 + Tmem210 protein_coding processed_transcript MGP_AJ_T0102118.1 MGP_AJ_G0039876.1 mouse_genomes_project 2 142546139 142554622 + unitary_pseudogene processed_transcript MGP_AJ_T0102119.1 MGP_AJ_G0039876.1 mouse_genomes_project 2 142551224 142587874 + unitary_pseudogene processed_transcript MGP_AJ_T0102120.1 MGP_AJ_G0039876.1 mouse_genomes_project 2 142551289 142553555 + unitary_pseudogene unitary_pseudogene MGP_AJ_T0102121.1 MGP_AJ_G0039876.1 mouse_genomes_project 2 142552006 142553562 + unitary_pseudogene processed_transcript MGP_AJ_T0057983.1 MGP_AJ_G0026529.1 mouse_genomes_project 2 137780611 137861548 + MGP_AJ_P0057983 Ism1 protein_coding protein_coding MGP_AJ_T0057984.1 MGP_AJ_G0026529.1 mouse_genomes_project 2 137780611 137861549 + MGP_AJ_P0057984 Ism1 protein_coding protein_coding MGP_AJ_T0059932.1 MGP_AJ_G0026993.1 mouse_genomes_project 2 180371578 180406261 + MGP_AJ_P0059932 Dnajc5 protein_coding protein_coding MGP_AJ_T0059933.1 MGP_AJ_G0026993.1 mouse_genomes_project 2 180371619 180403397 + MGP_AJ_P0059933 Dnajc5 protein_coding nonsense_mediated_decay MGP_AJ_T0059934.1 MGP_AJ_G0026993.1 mouse_genomes_project 2 180371644 180403395 + MGP_AJ_P0059934 Dnajc5 protein_coding protein_coding MGP_AJ_T0059935.1 MGP_AJ_G0026993.1 mouse_genomes_project 2 180371905 180399934 + MGP_AJ_P0059935 Dnajc5 protein_coding protein_coding MGP_AJ_T0059936.1 MGP_AJ_G0026993.1 mouse_genomes_project 2 180372040 180400752 + MGP_AJ_P0059936 Dnajc5 protein_coding protein_coding MGP_AJ_T0059937.1 MGP_AJ_G0026993.1 mouse_genomes_project 2 180400487 180401420 + Dnajc5 protein_coding processed_transcript MGP_AJ_T0056319.1 MGP_AJ_G0026140.1 mouse_genomes_project 2 91472397 91488828 - MGP_AJ_P0056319 Accs protein_coding protein_coding MGP_AJ_T0056320.1 MGP_AJ_G0026140.1 mouse_genomes_project 2 91474374 91488566 - MGP_AJ_P0056320 Accs protein_coding protein_coding MGP_AJ_T0056321.1 MGP_AJ_G0026140.1 mouse_genomes_project 2 91474374 91488686 - MGP_AJ_P0056321 Accs protein_coding protein_coding MGP_AJ_T0056322.1 MGP_AJ_G0026140.1 mouse_genomes_project 2 91474924 91478296 - Accs protein_coding retained_intron MGP_AJ_T0056323.1 MGP_AJ_G0026140.1 mouse_genomes_project 2 91475955 91488830 - Accs protein_coding retained_intron MGP_AJ_T0056324.1 MGP_AJ_G0026140.1 mouse_genomes_project 2 91476947 91486830 - MGP_AJ_P0056324 Accs protein_coding nonsense_mediated_decay MGP_AJ_T0056325.1 MGP_AJ_G0026140.1 mouse_genomes_project 2 91478129 91481205 - Accs protein_coding retained_intron MGP_AJ_T0056326.1 MGP_AJ_G0026140.1 mouse_genomes_project 2 91480216 91481318 - Accs protein_coding retained_intron MGP_AJ_T0056327.1 MGP_AJ_G0026140.1 mouse_genomes_project 2 91481505 91488703 - MGP_AJ_P0056327 Accs protein_coding protein_coding MGP_AJ_T0056328.1 MGP_AJ_G0026140.1 mouse_genomes_project 2 91481734 91488826 - Accs protein_coding retained_intron MGP_AJ_T0056329.1 MGP_AJ_G0026140.1 mouse_genomes_project 2 91481745 91488826 - Accs protein_coding retained_intron MGP_AJ_T0056330.1 MGP_AJ_G0026140.1 mouse_genomes_project 2 91483957 91484685 - Accs protein_coding processed_transcript MGP_AJ_T0101079.1 MGP_AJ_G0039045.1 mouse_genomes_project 2 149281359 149288511 - snoRNA snoRNA MGP_AJ_T0052708.1 MGP_AJ_G0025345.1 mouse_genomes_project 2 12604881 13323483 + MGP_AJ_P0052708 Malrd1 protein_coding protein_coding MGP_AJ_T0057852.1 MGP_AJ_G0026500.1 mouse_genomes_project 2 129991673 129996944 + MGP_AJ_P0057852 Prnd protein_coding protein_coding MGP_AJ_T0057853.1 MGP_AJ_G0026500.1 mouse_genomes_project 2 129991674 129996944 + MGP_AJ_P0057853 Prnd protein_coding protein_coding MGP_AJ_T0057854.1 MGP_AJ_G0026500.1 mouse_genomes_project 2 129991674 129996944 + MGP_AJ_P0057854 Prnd protein_coding protein_coding MGP_AJ_T0057855.1 MGP_AJ_G0026500.1 mouse_genomes_project 2 129991849 129996944 + MGP_AJ_P0057855 Prnd protein_coding protein_coding MGP_AJ_T0056765.1 MGP_AJ_G0026267.1 mouse_genomes_project 2 113633369 113836368 - MGP_AJ_P0056765 Meis2 protein_coding protein_coding MGP_AJ_T0056766.1 MGP_AJ_G0026267.1 mouse_genomes_project 2 113633369 113837164 - MGP_AJ_P0056766 Meis2 protein_coding protein_coding MGP_AJ_T0056767.1 MGP_AJ_G0026267.1 mouse_genomes_project 2 113633369 113837164 - MGP_AJ_P0056767 Meis2 protein_coding protein_coding MGP_AJ_T0056768.1 MGP_AJ_G0026267.1 mouse_genomes_project 2 113633369 113836368 - MGP_AJ_P0056768 Meis2 protein_coding protein_coding MGP_AJ_T0056769.1 MGP_AJ_G0026267.1 mouse_genomes_project 2 113633449 113836042 - MGP_AJ_P0056769 Meis2 protein_coding protein_coding MGP_AJ_T0056770.1 MGP_AJ_G0026267.1 mouse_genomes_project 2 113633604 113835835 - MGP_AJ_P0056770 Meis2 protein_coding protein_coding MGP_AJ_T0056771.1 MGP_AJ_G0026267.1 mouse_genomes_project 2 113634207 113643248 - Meis2 protein_coding processed_transcript MGP_AJ_T0056772.1 MGP_AJ_G0026267.1 mouse_genomes_project 2 113634530 113639163 - Meis2 protein_coding retained_intron MGP_AJ_T0056773.1 MGP_AJ_G0026267.1 mouse_genomes_project 2 113634576 113813451 - Meis2 protein_coding processed_transcript MGP_AJ_T0056774.1 MGP_AJ_G0026267.1 mouse_genomes_project 2 113634621 113643159 - Meis2 protein_coding processed_transcript MGP_AJ_T0056775.1 MGP_AJ_G0026267.1 mouse_genomes_project 2 113634762 113643248 - Meis2 protein_coding processed_transcript MGP_AJ_T0056776.1 MGP_AJ_G0026267.1 mouse_genomes_project 2 113635171 113643267 - Meis2 protein_coding retained_intron MGP_AJ_T0056777.1 MGP_AJ_G0026267.1 mouse_genomes_project 2 113637175 113643251 - Meis2 protein_coding processed_transcript MGP_AJ_T0056778.1 MGP_AJ_G0026267.1 mouse_genomes_project 2 113693676 113821091 - Meis2 protein_coding processed_transcript MGP_AJ_T0056779.1 MGP_AJ_G0026267.1 mouse_genomes_project 2 113767784 113833848 - Meis2 protein_coding retained_intron MGP_AJ_T0056780.1 MGP_AJ_G0026267.1 mouse_genomes_project 2 113810051 113820623 - Meis2 protein_coding retained_intron MGP_AJ_T0056781.1 MGP_AJ_G0026267.1 mouse_genomes_project 2 113820494 113834905 - Meis2 protein_coding processed_transcript MGP_AJ_T0056782.1 MGP_AJ_G0026267.1 mouse_genomes_project 2 113820494 113834018 - Meis2 protein_coding processed_transcript MGP_AJ_T0056783.1 MGP_AJ_G0026267.1 mouse_genomes_project 2 113820517 113830275 - Meis2 protein_coding retained_intron MGP_AJ_T0013483.1 MGP_AJ_G0011578.1 mouse_genomes_project 2 29552804 29554068 + processed_pseudogene processed_pseudogene MGP_AJ_T0056371.1 MGP_AJ_G0026149.1 mouse_genomes_project 2 99156759 99208974 - MGP_AJ_P0056371 B230118H07Rik protein_coding protein_coding MGP_AJ_T0056372.1 MGP_AJ_G0026149.1 mouse_genomes_project 2 99157075 99227467 - MGP_AJ_P0056372 B230118H07Rik protein_coding protein_coding MGP_AJ_T0056373.1 MGP_AJ_G0026149.1 mouse_genomes_project 2 99157084 99171103 - MGP_AJ_P0056373 B230118H07Rik protein_coding protein_coding MGP_AJ_T0056374.1 MGP_AJ_G0026149.1 mouse_genomes_project 2 99157189 99179888 - B230118H07Rik protein_coding processed_transcript MGP_AJ_T0056375.1 MGP_AJ_G0026149.1 mouse_genomes_project 2 99171012 99226703 - MGP_AJ_P0056375 B230118H07Rik protein_coding protein_coding MGP_AJ_T0056376.1 MGP_AJ_G0026149.1 mouse_genomes_project 2 99207764 99227424 - B230118H07Rik protein_coding retained_intron MGP_AJ_T0056377.1 MGP_AJ_G0026149.1 mouse_genomes_project 2 99208290 99219442 - B230118H07Rik protein_coding retained_intron MGP_AJ_T0056378.1 MGP_AJ_G0026149.1 mouse_genomes_project 2 99208800 99247961 - B230118H07Rik protein_coding retained_intron MGP_AJ_T0055811.1 MGP_AJ_G0025958.1 mouse_genomes_project 2 84391834 84392773 - MGP_AJ_P0055811 Olfr1099 protein_coding protein_coding MGP_AJ_T0052666.1 MGP_AJ_G0025337.1 mouse_genomes_project 2 11151603 11227709 + MGP_AJ_P0052666 Stam protein_coding protein_coding MGP_AJ_T0052667.1 MGP_AJ_G0025337.1 mouse_genomes_project 2 11151613 11206754 + Stam protein_coding processed_transcript MGP_AJ_T0052668.1 MGP_AJ_G0025337.1 mouse_genomes_project 2 11151694 11222440 + MGP_AJ_P0052668 Stam protein_coding protein_coding MGP_AJ_T0052669.1 MGP_AJ_G0025337.1 mouse_genomes_project 2 11151727 11225615 + MGP_AJ_P0052669 Stam protein_coding nonsense_mediated_decay MGP_AJ_T0052670.1 MGP_AJ_G0025337.1 mouse_genomes_project 2 11151932 11207214 + MGP_AJ_P0052670 Stam protein_coding protein_coding MGP_AJ_T0052671.1 MGP_AJ_G0025337.1 mouse_genomes_project 2 11206477 11207309 + Stam protein_coding retained_intron MGP_AJ_T0052672.1 MGP_AJ_G0025337.1 mouse_genomes_project 2 11207187 11209531 + Stam protein_coding processed_transcript MGP_AJ_T0052673.1 MGP_AJ_G0025337.1 mouse_genomes_project 2 11208984 11217257 + Stam protein_coding retained_intron MGP_AJ_T0052674.1 MGP_AJ_G0025337.1 mouse_genomes_project 2 11212262 11217199 + Stam protein_coding retained_intron MGP_AJ_T0053680.1 MGP_AJ_G0025523.1 mouse_genomes_project 2 26891896 26915146 + Urm1 protein_coding processed_transcript MGP_AJ_T0053681.1 MGP_AJ_G0025523.1 mouse_genomes_project 2 26899397 26915375 + Urm1 protein_coding processed_transcript MGP_AJ_T0053682.1 MGP_AJ_G0025523.1 mouse_genomes_project 2 26899397 26917003 + MGP_AJ_P0053682 Urm1 protein_coding protein_coding MGP_AJ_T0053683.1 MGP_AJ_G0025523.1 mouse_genomes_project 2 26899416 26915422 + Urm1 protein_coding processed_transcript MGP_AJ_T0053684.1 MGP_AJ_G0025523.1 mouse_genomes_project 2 26899450 26905692 + Urm1 protein_coding retained_intron MGP_AJ_T0053685.1 MGP_AJ_G0025523.1 mouse_genomes_project 2 26913648 26916065 + Urm1 protein_coding retained_intron MGP_AJ_T0058469.1 MGP_AJ_G0026669.1 mouse_genomes_project 2 152259244 152263882 + Bpifb4 protein_coding retained_intron MGP_AJ_T0058470.1 MGP_AJ_G0026669.1 mouse_genomes_project 2 152259253 152285742 + MGP_AJ_P0058470 Bpifb4 protein_coding protein_coding MGP_AJ_T0058471.1 MGP_AJ_G0026669.1 mouse_genomes_project 2 152262142 152285505 + MGP_AJ_P0058471 Bpifb4 protein_coding protein_coding MGP_AJ_T0058472.1 MGP_AJ_G0026669.1 mouse_genomes_project 2 152263548 152266108 + Bpifb4 protein_coding retained_intron MGP_AJ_T0058473.1 MGP_AJ_G0026669.1 mouse_genomes_project 2 152265193 152285505 + MGP_AJ_P0058473 Bpifb4 protein_coding protein_coding MGP_AJ_T0055831.1 MGP_AJ_G0025978.1 mouse_genomes_project 2 84968256 84969201 + MGP_AJ_P0055831 Olfr1126 protein_coding protein_coding MGP_AJ_T0004091.1 MGP_AJ_G0003622.1 mouse_genomes_project 2 129702062 129771324 - Gm14280 antisense antisense MGP_AJ_T0055225.1 MGP_AJ_G0025791.1 mouse_genomes_project 2 67966951 67967812 - MGP_AJ_P0055225 Gm26558 protein_coding protein_coding MGP_AJ_T0055793.1 MGP_AJ_G0025942.1 mouse_genomes_project 2 83860914 83861797 - MGP_AJ_P0055793 protein_coding protein_coding MGP_AJ_T0058056.1 MGP_AJ_G0026548.1 mouse_genomes_project 2 142445716 142458461 + Csrp2bp protein_coding processed_transcript MGP_AJ_T0058058.1 MGP_AJ_G0026548.1 mouse_genomes_project 2 142445725 142493293 + MGP_AJ_P0058058 Csrp2bp protein_coding protein_coding MGP_AJ_T0058059.1 MGP_AJ_G0026548.1 mouse_genomes_project 2 142458870 142478960 + MGP_AJ_P0058059 Csrp2bp protein_coding nonsense_mediated_decay MGP_AJ_T0058060.1 MGP_AJ_G0026548.1 mouse_genomes_project 2 142460454 142474822 + Csrp2bp protein_coding processed_transcript MGP_AJ_T0058061.1 MGP_AJ_G0026548.1 mouse_genomes_project 2 142460919 142486413 + Csrp2bp protein_coding processed_transcript MGP_AJ_T0058062.1 MGP_AJ_G0026548.1 mouse_genomes_project 2 142474539 142479025 + Csrp2bp protein_coding retained_intron MGP_AJ_T0058063.1 MGP_AJ_G0026548.1 mouse_genomes_project 2 142474553 142479006 + Csrp2bp protein_coding processed_transcript MGP_AJ_T0058064.1 MGP_AJ_G0026548.1 mouse_genomes_project 2 142487986 142493315 + Csrp2bp protein_coding retained_intron MGP_AJ_T0058065.1 MGP_AJ_G0026548.1 mouse_genomes_project 2 142488186 142489993 + MGP_AJ_P0058065 Csrp2bp protein_coding protein_coding MGP_AJ_T0058066.1 MGP_AJ_G0026548.1 mouse_genomes_project 2 142489717 142493316 + MGP_AJ_P0058066 Csrp2bp protein_coding protein_coding MGP_AJ_T0003912.1 MGP_AJ_G0003495.1 mouse_genomes_project 2 17445351 17449364 - antisense antisense MGP_AJ_T0017902.1 MGP_AJ_G0015462.1 mouse_genomes_project 2 157112595 157127640 - Gm14204 processed_transcript processed_transcript MGP_AJ_T0017903.1 MGP_AJ_G0015462.1 mouse_genomes_project 2 157115296 157127704 - Gm14204 processed_transcript processed_transcript MGP_AJ_T0017904.1 MGP_AJ_G0015462.1 mouse_genomes_project 2 157120159 157127587 - Gm14204 processed_transcript processed_transcript MGP_AJ_T0017905.1 MGP_AJ_G0015462.1 mouse_genomes_project 2 157120298 157127571 - Gm14204 processed_transcript processed_transcript MGP_AJ_T0055879.1 MGP_AJ_G0026015.1 mouse_genomes_project 2 86011630 86012602 + MGP_AJ_P0055879 Olfr1178 protein_coding protein_coding MGP_AJ_T0098653.1 MGP_AJ_G0036637.1 mouse_genomes_project 2 101940465 101940578 + Gm25554 rRNA rRNA MGP_AJ_T0053050.1 MGP_AJ_G0025404.1 mouse_genomes_project 2 22207184 22212698 - MGP_AJ_P0053050 Slc34a3 protein_coding protein_coding MGP_AJ_T0053051.1 MGP_AJ_G0025404.1 mouse_genomes_project 2 22209068 22211380 - Slc34a3 protein_coding processed_transcript MGP_AJ_T0053052.1 MGP_AJ_G0025404.1 mouse_genomes_project 2 22210250 22212552 - Slc34a3 protein_coding processed_transcript MGP_AJ_T0053053.1 MGP_AJ_G0025404.1 mouse_genomes_project 2 22210291 22212545 - Slc34a3 protein_coding processed_transcript MGP_AJ_T0053054.1 MGP_AJ_G0025404.1 mouse_genomes_project 2 22210296 22212042 - Slc34a3 protein_coding processed_transcript MGP_AJ_T0053055.1 MGP_AJ_G0025404.1 mouse_genomes_project 2 22210567 22212568 - Slc34a3 protein_coding processed_transcript MGP_AJ_T0053056.1 MGP_AJ_G0025404.1 mouse_genomes_project 2 22210760 22212522 - Slc34a3 protein_coding processed_transcript MGP_AJ_T0101027.1 MGP_AJ_G0038993.1 mouse_genomes_project 2 30372885 30373022 - Gm23546 snoRNA snoRNA MGP_AJ_T0057916.1 MGP_AJ_G0026513.1 mouse_genomes_project 2 130927605 130940189 - MGP_AJ_P0057916 Lrrn4 protein_coding protein_coding MGP_AJ_T0007215.1 MGP_AJ_G0005912.1 mouse_genomes_project 2 57307716 57309413 + Gm13572 lincRNA lincRNA MGP_AJ_T0013499.1 MGP_AJ_G0011594.1 mouse_genomes_project 2 34879974 34880350 + processed_pseudogene processed_pseudogene MGP_AJ_T0055277.1 MGP_AJ_G0025799.1 mouse_genomes_project 2 68696670 68748635 + MGP_AJ_P0055277 Hat1 protein_coding protein_coding MGP_AJ_T0055278.1 MGP_AJ_G0025799.1 mouse_genomes_project 2 68696972 68748635 + MGP_AJ_P0055278 Hat1 protein_coding protein_coding MGP_AJ_T0055279.1 MGP_AJ_G0025799.1 mouse_genomes_project 2 68714492 68717435 + Hat1 protein_coding processed_transcript MGP_AJ_T0055282.1 MGP_AJ_G0025799.1 mouse_genomes_project 2 68726308 68745858 + Hat1 protein_coding processed_transcript MGP_AJ_T0011496.1 MGP_AJ_G0009618.1 mouse_genomes_project 2 42391108 42391169 + Gm27676 misc_RNA misc_RNA MGP_AJ_T0010442.1 MGP_AJ_G0008564.1 mouse_genomes_project 2 103671776 103671901 + Gm22002 miRNA miRNA MGP_AJ_T0101030.1 MGP_AJ_G0038996.1 mouse_genomes_project 2 40055028 40055161 + Gm24350 snoRNA snoRNA MGP_AJ_T0056341.1 MGP_AJ_G0026143.1 mouse_genomes_project 2 91597666 91633183 - MGP_AJ_P0056341 Gm27027 protein_coding protein_coding MGP_AJ_T0059752.1 MGP_AJ_G0026961.1 mouse_genomes_project 2 179342023 179387239 + MGP_AJ_P0059752 Ntsr1 protein_coding protein_coding MGP_AJ_T0059753.1 MGP_AJ_G0026961.1 mouse_genomes_project 2 179342274 179386478 + MGP_AJ_P0059753 Ntsr1 protein_coding protein_coding MGP_AJ_T0058050.1 MGP_AJ_G0026546.1 mouse_genomes_project 2 142343982 142353914 + MGP_AJ_P0058050 Mgme1 protein_coding protein_coding MGP_AJ_T0058051.1 MGP_AJ_G0026546.1 mouse_genomes_project 2 142344219 142354625 + MGP_AJ_P0058051 Mgme1 protein_coding protein_coding MGP_AJ_T0058052.1 MGP_AJ_G0026546.1 mouse_genomes_project 2 142344260 142353914 + MGP_AJ_P0058052 Mgme1 protein_coding protein_coding MGP_AJ_T0053092.1 MGP_AJ_G0025414.1 mouse_genomes_project 2 22269206 22270472 + MGP_AJ_P0053092 Lrrc26 protein_coding protein_coding MGP_AJ_T0056695.1 MGP_AJ_G0026243.1 mouse_genomes_project 2 109821269 109822208 - MGP_AJ_P0056695 Olfr1314 protein_coding protein_coding MGP_AJ_T0058196.1 MGP_AJ_G0026588.1 mouse_genomes_project 2 147987890 148059506 + MGP_AJ_P0058196 Syndig1 protein_coding protein_coding MGP_AJ_T0058198.1 MGP_AJ_G0026588.1 mouse_genomes_project 2 147989467 148165084 + MGP_AJ_P0058198 Syndig1 protein_coding protein_coding MGP_AJ_T0058199.1 MGP_AJ_G0026588.1 mouse_genomes_project 2 147989548 148059547 + MGP_AJ_P0058199 Syndig1 protein_coding protein_coding MGP_AJ_T0058200.1 MGP_AJ_G0026588.1 mouse_genomes_project 2 147989580 148059543 + MGP_AJ_P0058200 Syndig1 protein_coding protein_coding MGP_AJ_T0058201.1 MGP_AJ_G0026588.1 mouse_genomes_project 2 147989601 148059673 + MGP_AJ_P0058201 Syndig1 protein_coding protein_coding MGP_AJ_T0058202.1 MGP_AJ_G0026588.1 mouse_genomes_project 2 148055927 148165084 + MGP_AJ_P0058202 Syndig1 protein_coding protein_coding MGP_AJ_T0010346.1 MGP_AJ_G0008468.1 mouse_genomes_project 2 7527268 7527348 + miRNA miRNA MGP_AJ_T0001072.1 MGP_AJ_G0001003.1 mouse_genomes_project 2 35758885 35761483 - TEC TEC MGP_AJ_T0054442.1 MGP_AJ_G0025632.1 mouse_genomes_project 2 32597028 32629400 - MGP_AJ_P0054442 Ggta1 protein_coding protein_coding MGP_AJ_T0054443.1 MGP_AJ_G0025632.1 mouse_genomes_project 2 32597028 32664163 - MGP_AJ_P0054443 Ggta1 protein_coding protein_coding MGP_AJ_T0054444.1 MGP_AJ_G0025632.1 mouse_genomes_project 2 32597032 32664346 - MGP_AJ_P0054444 Ggta1 protein_coding protein_coding MGP_AJ_T0054445.1 MGP_AJ_G0025632.1 mouse_genomes_project 2 32597032 32664146 - MGP_AJ_P0054445 Ggta1 protein_coding protein_coding MGP_AJ_T0054446.1 MGP_AJ_G0025632.1 mouse_genomes_project 2 32598958 32620200 - MGP_AJ_P0054446 Ggta1 protein_coding protein_coding MGP_AJ_T0054447.1 MGP_AJ_G0025632.1 mouse_genomes_project 2 32598958 32620200 - MGP_AJ_P0054447 Ggta1 protein_coding protein_coding MGP_AJ_T0054448.1 MGP_AJ_G0025632.1 mouse_genomes_project 2 32604797 32638868 - MGP_AJ_P0054448 Ggta1 protein_coding protein_coding MGP_AJ_T0054449.1 MGP_AJ_G0025632.1 mouse_genomes_project 2 32620201 32642596 - Ggta1 protein_coding processed_transcript MGP_AJ_T0054450.1 MGP_AJ_G0025632.1 mouse_genomes_project 2 32629280 32666106 - Ggta1 protein_coding processed_transcript MGP_AJ_T0013441.1 MGP_AJ_G0011536.1 mouse_genomes_project 2 15035848 15036113 - processed_pseudogene processed_pseudogene MGP_AJ_T0054437.1 MGP_AJ_G0025629.1 mouse_genomes_project 2 32509295 32532290 - MGP_AJ_P0054437 Stom protein_coding protein_coding MGP_AJ_T0054438.1 MGP_AJ_G0025629.1 mouse_genomes_project 2 32510650 32515815 - Stom protein_coding retained_intron MGP_AJ_T0013746.1 MGP_AJ_G0011841.1 mouse_genomes_project 2 125558873 125559723 - processed_pseudogene processed_pseudogene MGP_AJ_T0102457.1 MGP_AJ_G0040199.1 mouse_genomes_project 2 19472875 19474308 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0057557.1 MGP_AJ_G0026430.1 mouse_genomes_project 2 125693928 125719538 - MGP_AJ_P0057557 Mall protein_coding protein_coding MGP_AJ_T0059972.1 MGP_AJ_G0026998.1 mouse_genomes_project 2 180525416 180527221 - MGP_AJ_P0059972 Sox18 protein_coding protein_coding MGP_AJ_T0054524.1 MGP_AJ_G0025668.1 mouse_genomes_project 2 34533830 34534814 + MGP_AJ_P0054524 Olfr368 protein_coding protein_coding MGP_AJ_T0007266.1 MGP_AJ_G0005956.1 mouse_genomes_project 2 90117803 90163249 + Gm13814 lincRNA lincRNA MGP_AJ_T0102517.1 MGP_AJ_G0040259.1 mouse_genomes_project 2 136973181 136973766 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0058253.1 MGP_AJ_G0026605.1 mouse_genomes_project 2 149765019 149783196 + MGP_AJ_P0058253 Nsfl1c protein_coding protein_coding MGP_AJ_T0058254.1 MGP_AJ_G0026605.1 mouse_genomes_project 2 149765026 149778421 + Nsfl1c protein_coding retained_intron MGP_AJ_T0058255.1 MGP_AJ_G0026605.1 mouse_genomes_project 2 149765127 149772553 + Nsfl1c protein_coding retained_intron MGP_AJ_T0058256.1 MGP_AJ_G0026605.1 mouse_genomes_project 2 149765130 149783191 + MGP_AJ_P0058256 Nsfl1c protein_coding protein_coding MGP_AJ_T0058257.1 MGP_AJ_G0026605.1 mouse_genomes_project 2 149765141 149783300 + MGP_AJ_P0058257 Nsfl1c protein_coding protein_coding MGP_AJ_T0058258.1 MGP_AJ_G0026605.1 mouse_genomes_project 2 149765145 149783192 + MGP_AJ_P0058258 Nsfl1c protein_coding unknown_likely_coding MGP_AJ_T0058259.1 MGP_AJ_G0026605.1 mouse_genomes_project 2 149765148 149774739 + Nsfl1c protein_coding retained_intron MGP_AJ_T0058260.1 MGP_AJ_G0026605.1 mouse_genomes_project 2 149773642 149781548 + Nsfl1c protein_coding processed_transcript MGP_AJ_T0058261.1 MGP_AJ_G0026605.1 mouse_genomes_project 2 149774295 149782875 + Nsfl1c protein_coding retained_intron MGP_AJ_T0058262.1 MGP_AJ_G0026605.1 mouse_genomes_project 2 149775052 149781578 + Nsfl1c protein_coding retained_intron MGP_AJ_T0058263.1 MGP_AJ_G0026605.1 mouse_genomes_project 2 149780985 149783148 + Nsfl1c protein_coding retained_intron MGP_AJ_T0010406.1 MGP_AJ_G0008528.1 mouse_genomes_project 2 35446001 35446083 - Gm44455 miRNA miRNA MGP_AJ_T0098663.1 MGP_AJ_G0036647.1 mouse_genomes_project 2 165248404 165248520 - Gm23152 rRNA rRNA MGP_AJ_T0010408.1 MGP_AJ_G0008530.1 mouse_genomes_project 2 36082886 36082962 + Mir181a-2 miRNA miRNA MGP_AJ_T0007385.1 MGP_AJ_G0006051.1 mouse_genomes_project 2 159876511 159877451 + Gm14241 lincRNA lincRNA MGP_AJ_T0101011.1 MGP_AJ_G0038977.1 mouse_genomes_project 2 16723842 16723974 + Gm24670 snoRNA snoRNA MGP_AJ_T0010435.1 MGP_AJ_G0008557.1 mouse_genomes_project 2 91880555 91880645 - Mir129-2 miRNA miRNA MGP_AJ_T0003997.1 MGP_AJ_G0003560.1 mouse_genomes_project 2 66530882 66554052 + Gm13613 antisense antisense MGP_AJ_T0056146.1 MGP_AJ_G0026111.1 mouse_genomes_project 2 89071232 89093043 + Lrp4 protein_coding processed_transcript MGP_AJ_T0056147.1 MGP_AJ_G0026111.1 mouse_genomes_project 2 89071232 89127523 + MGP_AJ_P0056147 Lrp4 protein_coding protein_coding MGP_AJ_T0056148.1 MGP_AJ_G0026111.1 mouse_genomes_project 2 89090011 89094622 + Lrp4 protein_coding processed_transcript MGP_AJ_T0056149.1 MGP_AJ_G0026111.1 mouse_genomes_project 2 89090074 89092598 + Lrp4 protein_coding processed_transcript MGP_AJ_T0056844.1 MGP_AJ_G0026284.1 mouse_genomes_project 2 116553917 116585119 + MGP_AJ_P0056844 Disp2 protein_coding protein_coding MGP_AJ_T0056845.1 MGP_AJ_G0026284.1 mouse_genomes_project 2 116553920 116569397 + MGP_AJ_P0056845 Disp2 protein_coding protein_coding MGP_AJ_T0056846.1 MGP_AJ_G0026284.1 mouse_genomes_project 2 116553937 116585238 + MGP_AJ_P0056846 Disp2 protein_coding protein_coding MGP_AJ_T0056847.1 MGP_AJ_G0026284.1 mouse_genomes_project 2 116553940 116564267 + MGP_AJ_P0056847 Disp2 protein_coding protein_coding MGP_AJ_T0056848.1 MGP_AJ_G0026284.1 mouse_genomes_project 2 116553957 116564266 + Disp2 protein_coding retained_intron MGP_AJ_T0056683.1 MGP_AJ_G0026231.1 mouse_genomes_project 2 109413011 109414175 + MGP_AJ_P0056683 protein_coding protein_coding MGP_AJ_T0013765.1 MGP_AJ_G0011860.1 mouse_genomes_project 2 129956387 129957261 + processed_pseudogene processed_pseudogene MGP_AJ_T0099799.1 MGP_AJ_G0037765.1 mouse_genomes_project 2 162063082 162063185 + Gm25881 snRNA snRNA MGP_AJ_T0017824.1 MGP_AJ_G0015428.1 mouse_genomes_project 2 107323353 107324281 + Gm20638 processed_transcript processed_transcript MGP_AJ_T0013561.1 MGP_AJ_G0011656.1 mouse_genomes_project 2 56394655 56395180 - processed_pseudogene processed_pseudogene MGP_AJ_T0057119.1 MGP_AJ_G0026336.1 mouse_genomes_project 2 118665985 118778706 - MGP_AJ_P0057119 Ubr1 protein_coding protein_coding MGP_AJ_T0057120.1 MGP_AJ_G0026336.1 mouse_genomes_project 2 118668290 118677274 - Ubr1 protein_coding processed_transcript MGP_AJ_T0057121.1 MGP_AJ_G0026336.1 mouse_genomes_project 2 118678797 118696646 - Ubr1 protein_coding processed_transcript MGP_AJ_T0057122.1 MGP_AJ_G0026336.1 mouse_genomes_project 2 118708395 118721106 - Ubr1 protein_coding processed_transcript MGP_AJ_T0057123.1 MGP_AJ_G0026336.1 mouse_genomes_project 2 118728424 118736978 - Ubr1 protein_coding processed_transcript MGP_AJ_T0057124.1 MGP_AJ_G0026336.1 mouse_genomes_project 2 118752037 118778604 - Ubr1 protein_coding retained_intron MGP_AJ_T0057125.1 MGP_AJ_G0026336.1 mouse_genomes_project 2 118770125 118778683 - Ubr1 protein_coding retained_intron MGP_AJ_T0057237.1 MGP_AJ_G0026352.1 mouse_genomes_project 2 119227354 119256738 + MGP_AJ_P0057237 Pdia3 protein_coding protein_coding MGP_AJ_T0057238.1 MGP_AJ_G0026352.1 mouse_genomes_project 2 119227462 119239506 + Pdia3 protein_coding processed_transcript MGP_AJ_T0057239.1 MGP_AJ_G0026352.1 mouse_genomes_project 2 119227687 119248423 + MGP_AJ_P0057239 Pdia3 protein_coding nonsense_mediated_decay MGP_AJ_T0057240.1 MGP_AJ_G0026352.1 mouse_genomes_project 2 119239534 119246870 + Pdia3 protein_coding retained_intron MGP_AJ_T0056647.1 MGP_AJ_G0026205.1 mouse_genomes_project 2 107906882 107960911 - MGP_AJ_P0056647 Bbox1 protein_coding protein_coding MGP_AJ_T0056648.1 MGP_AJ_G0026205.1 mouse_genomes_project 2 107948137 107969387 - MGP_AJ_P0056648 Bbox1 protein_coding protein_coding MGP_AJ_T0101066.1 MGP_AJ_G0039032.1 mouse_genomes_project 2 128314421 128314489 + Snord110 snoRNA snoRNA MGP_AJ_T0003899.1 MGP_AJ_G0003484.1 mouse_genomes_project 2 8551282 8562483 + Gm10851 antisense antisense MGP_AJ_T0053350.1 MGP_AJ_G0025463.1 mouse_genomes_project 2 23400114 23406629 - MGP_AJ_P0053350 Sdccag3 protein_coding protein_coding MGP_AJ_T0053351.1 MGP_AJ_G0025463.1 mouse_genomes_project 2 23400114 23406604 - MGP_AJ_P0053351 Sdccag3 protein_coding protein_coding MGP_AJ_T0053352.1 MGP_AJ_G0025463.1 mouse_genomes_project 2 23400114 23406610 - MGP_AJ_P0053352 Sdccag3 protein_coding protein_coding MGP_AJ_T0053353.1 MGP_AJ_G0025463.1 mouse_genomes_project 2 23400114 23406617 - MGP_AJ_P0053353 Sdccag3 protein_coding protein_coding MGP_AJ_T0053354.1 MGP_AJ_G0025463.1 mouse_genomes_project 2 23400115 23404894 - Sdccag3 protein_coding processed_transcript MGP_AJ_T0053355.1 MGP_AJ_G0025463.1 mouse_genomes_project 2 23400867 23402526 - Sdccag3 protein_coding processed_transcript MGP_AJ_T0053356.1 MGP_AJ_G0025463.1 mouse_genomes_project 2 23400876 23402922 - Sdccag3 protein_coding processed_transcript MGP_AJ_T0053357.1 MGP_AJ_G0025463.1 mouse_genomes_project 2 23403967 23406596 - Sdccag3 protein_coding processed_transcript MGP_AJ_T0053358.1 MGP_AJ_G0025463.1 mouse_genomes_project 2 23403967 23406619 - Sdccag3 protein_coding processed_transcript MGP_AJ_T0053359.1 MGP_AJ_G0025463.1 mouse_genomes_project 2 23404325 23406608 - Sdccag3 protein_coding processed_transcript MGP_AJ_T0053360.1 MGP_AJ_G0025463.1 mouse_genomes_project 2 23404417 23406007 - MGP_AJ_P0053360 Sdccag3 protein_coding protein_coding MGP_AJ_T0053361.1 MGP_AJ_G0025463.1 mouse_genomes_project 2 23404438 23406580 - Sdccag3 protein_coding processed_transcript MGP_AJ_T0053362.1 MGP_AJ_G0025463.1 mouse_genomes_project 2 23404868 23406478 - Sdccag3 protein_coding processed_transcript MGP_AJ_T0058675.1 MGP_AJ_G0026717.1 mouse_genomes_project 2 154442478 154477825 - MGP_AJ_P0058675 6430550D23Rik protein_coding nonsense_mediated_decay MGP_AJ_T0058680.1 MGP_AJ_G0026717.1 mouse_genomes_project 2 154470089 154474073 - MGP_AJ_P0058680 6430550D23Rik protein_coding protein_coding MGP_AJ_T0058681.1 MGP_AJ_G0026717.1 mouse_genomes_project 2 154470255 154477841 - 6430550D23Rik protein_coding retained_intron MGP_AJ_T0058682.1 MGP_AJ_G0026717.1 mouse_genomes_project 2 154470910 154473542 - MGP_AJ_P0058682 6430550D23Rik protein_coding protein_coding MGP_AJ_T0058683.1 MGP_AJ_G0026717.1 mouse_genomes_project 2 154472794 154477837 - MGP_AJ_P0058683 6430550D23Rik protein_coding protein_coding MGP_AJ_T0058684.1 MGP_AJ_G0026717.1 mouse_genomes_project 2 154472887 154477895 - MGP_AJ_P0058684 6430550D23Rik protein_coding protein_coding MGP_AJ_T0058685.1 MGP_AJ_G0026717.1 mouse_genomes_project 2 154472974 154474073 - MGP_AJ_P0058685 6430550D23Rik protein_coding protein_coding MGP_AJ_T0058686.1 MGP_AJ_G0026717.1 mouse_genomes_project 2 154473017 154473793 - MGP_AJ_P0058686 6430550D23Rik protein_coding protein_coding MGP_AJ_T0058687.1 MGP_AJ_G0026717.1 mouse_genomes_project 2 154473049 154473793 - MGP_AJ_P0058687 6430550D23Rik protein_coding protein_coding MGP_AJ_T0053422.1 MGP_AJ_G0025472.1 mouse_genomes_project 2 23690644 23694253 - MGP_AJ_P0053422 Lcn4 protein_coding protein_coding MGP_AJ_T0004157.1 MGP_AJ_G0003672.1 mouse_genomes_project 2 162224778 162232042 - Gm16316 antisense antisense MGP_AJ_T0058832.1 MGP_AJ_G0026738.1 mouse_genomes_project 2 155422146 155489951 - MGP_AJ_P0058832 Ndrg3 protein_coding protein_coding MGP_AJ_T0058833.1 MGP_AJ_G0026738.1 mouse_genomes_project 2 155422146 155489938 - MGP_AJ_P0058833 Ndrg3 protein_coding protein_coding MGP_AJ_T0058834.1 MGP_AJ_G0026738.1 mouse_genomes_project 2 155423204 155440993 - Ndrg3 protein_coding processed_transcript MGP_AJ_T0058835.1 MGP_AJ_G0026738.1 mouse_genomes_project 2 155427314 155431134 - Ndrg3 protein_coding processed_transcript MGP_AJ_T0058836.1 MGP_AJ_G0026738.1 mouse_genomes_project 2 155430436 155489930 - MGP_AJ_P0058836 Ndrg3 protein_coding protein_coding MGP_AJ_T0058837.1 MGP_AJ_G0026738.1 mouse_genomes_project 2 155434796 155450875 - Ndrg3 protein_coding processed_transcript MGP_AJ_T0058838.1 MGP_AJ_G0026738.1 mouse_genomes_project 2 155442930 155489895 - Ndrg3 protein_coding processed_transcript MGP_AJ_T0058839.1 MGP_AJ_G0026738.1 mouse_genomes_project 2 155445740 155489822 - Ndrg3 protein_coding processed_transcript MGP_AJ_T0058840.1 MGP_AJ_G0026738.1 mouse_genomes_project 2 155453820 155489942 - Ndrg3 protein_coding retained_intron MGP_AJ_T0058841.1 MGP_AJ_G0026738.1 mouse_genomes_project 2 155467608 155489891 - Ndrg3 protein_coding processed_transcript MGP_AJ_T0099749.1 MGP_AJ_G0037715.1 mouse_genomes_project 2 21992435 21992539 - Gm24875 snRNA snRNA MGP_AJ_T0058381.1 MGP_AJ_G0026648.1 mouse_genomes_project 2 151240385 151250789 - MGP_AJ_P0058381 Dusp15 protein_coding protein_coding MGP_AJ_T0058382.1 MGP_AJ_G0026648.1 mouse_genomes_project 2 151240412 151243946 - Dusp15 protein_coding retained_intron MGP_AJ_T0058383.1 MGP_AJ_G0026648.1 mouse_genomes_project 2 151244322 151250915 - MGP_AJ_P0058383 Dusp15 protein_coding protein_coding MGP_AJ_T0058384.1 MGP_AJ_G0026648.1 mouse_genomes_project 2 151244366 151251031 - MGP_AJ_P0058384 Dusp15 protein_coding protein_coding MGP_AJ_T0004122.1 MGP_AJ_G0003643.1 mouse_genomes_project 2 145479715 145480597 - AI646519 antisense antisense MGP_AJ_T0013586.1 MGP_AJ_G0011681.1 mouse_genomes_project 2 67036203 67036636 - processed_pseudogene processed_pseudogene MGP_AJ_T0007384.1 MGP_AJ_G0006050.1 mouse_genomes_project 2 159741044 159741636 - Gm14242 lincRNA lincRNA MGP_AJ_T0058524.1 MGP_AJ_G0026685.1 mouse_genomes_project 2 152959481 152970088 - MGP_AJ_P0058524 E2f1 protein_coding protein_coding MGP_AJ_T0058525.1 MGP_AJ_G0026685.1 mouse_genomes_project 2 152959708 152969916 - MGP_AJ_P0058525 E2f1 protein_coding protein_coding MGP_AJ_T0010451.1 MGP_AJ_G0008573.1 mouse_genomes_project 2 120548783 120548862 + Mir147 miRNA miRNA MGP_AJ_T0054045.1 MGP_AJ_G0025574.1 mouse_genomes_project 2 29233543 29249537 + MGP_AJ_P0054045 Plpp7 protein_coding protein_coding MGP_AJ_T0054046.1 MGP_AJ_G0025574.1 mouse_genomes_project 2 29233580 29248843 + MGP_AJ_P0054046 Plpp7 protein_coding protein_coding MGP_AJ_T0054047.1 MGP_AJ_G0025574.1 mouse_genomes_project 2 29234170 29249525 + MGP_AJ_P0054047 Plpp7 protein_coding protein_coding MGP_AJ_T0053464.1 MGP_AJ_G0025481.1 mouse_genomes_project 2 23981587 23992087 - MGP_AJ_P0053464 Rexo4 protein_coding protein_coding MGP_AJ_T0053465.1 MGP_AJ_G0025481.1 mouse_genomes_project 2 23981590 23992087 - MGP_AJ_P0053465 Rexo4 protein_coding protein_coding MGP_AJ_T0053466.1 MGP_AJ_G0025481.1 mouse_genomes_project 2 23982292 23984551 - Rexo4 protein_coding processed_transcript MGP_AJ_T0053467.1 MGP_AJ_G0025481.1 mouse_genomes_project 2 23982394 23983649 - Rexo4 protein_coding processed_transcript MGP_AJ_T0053468.1 MGP_AJ_G0025481.1 mouse_genomes_project 2 23982507 23991980 - MGP_AJ_P0053468 Rexo4 protein_coding protein_coding MGP_AJ_T0053469.1 MGP_AJ_G0025481.1 mouse_genomes_project 2 23982965 23984284 - Rexo4 protein_coding processed_transcript MGP_AJ_T0053470.1 MGP_AJ_G0025481.1 mouse_genomes_project 2 23984297 23991979 - Rexo4 protein_coding processed_transcript MGP_AJ_T0053471.1 MGP_AJ_G0025481.1 mouse_genomes_project 2 23986000 23987967 - Rexo4 protein_coding processed_transcript MGP_AJ_T0053472.1 MGP_AJ_G0025481.1 mouse_genomes_project 2 23990579 23992025 - Rexo4 protein_coding processed_transcript MGP_AJ_T0013600.1 MGP_AJ_G0011695.1 mouse_genomes_project 2 70545211 70545556 + processed_pseudogene processed_pseudogene MGP_AJ_T0004064.1 MGP_AJ_G0003600.1 mouse_genomes_project 2 113326144 113350510 - Gm13977 antisense antisense MGP_AJ_T0013509.1 MGP_AJ_G0011604.1 mouse_genomes_project 2 36801622 36802214 - processed_pseudogene processed_pseudogene MGP_AJ_T0003904.1 MGP_AJ_G0003488.1 mouse_genomes_project 2 11823523 11846595 - Gm13269 antisense antisense MGP_AJ_T0003905.1 MGP_AJ_G0003488.1 mouse_genomes_project 2 11823523 11850140 - Gm13269 antisense antisense MGP_AJ_T0054498.1 MGP_AJ_G0025644.1 mouse_genomes_project 2 33660723 33661665 - MGP_AJ_P0054498 Olfr341 protein_coding protein_coding MGP_AJ_T0003968.1 MGP_AJ_G0003538.1 mouse_genomes_project 2 36052945 36068246 + Nr6a1os antisense antisense MGP_AJ_T0003969.1 MGP_AJ_G0003538.1 mouse_genomes_project 2 36053025 36082522 + Nr6a1os antisense antisense MGP_AJ_T0055763.1 MGP_AJ_G0025913.1 mouse_genomes_project 2 83226196 83227129 - MGP_AJ_P0055763 Olfr1019 protein_coding protein_coding MGP_AJ_T0013760.1 MGP_AJ_G0011855.1 mouse_genomes_project 2 129035052 129035521 + processed_pseudogene processed_pseudogene MGP_AJ_T0057991.1 MGP_AJ_G0026532.1 mouse_genomes_project 2 138253746 138255237 + MGP_AJ_P0057991 Gm17374 protein_coding protein_coding MGP_AJ_T0055957.1 MGP_AJ_G0026076.1 mouse_genomes_project 2 87564254 87568246 + MGP_AJ_P0055957 Olfr1260 protein_coding protein_coding MGP_AJ_T0055958.1 MGP_AJ_G0026076.1 mouse_genomes_project 2 87564261 87567726 + Olfr1260 protein_coding processed_transcript MGP_AJ_T0055959.1 MGP_AJ_G0026076.1 mouse_genomes_project 2 87564264 87567676 + MGP_AJ_P0055959 Olfr1260 protein_coding protein_coding MGP_AJ_T0055960.1 MGP_AJ_G0026076.1 mouse_genomes_project 2 87564270 87567733 + Olfr1260 protein_coding processed_transcript MGP_AJ_T0055961.1 MGP_AJ_G0026076.1 mouse_genomes_project 2 87567313 87568246 + MGP_AJ_P0055961 Olfr1260 protein_coding protein_coding MGP_AJ_T0058168.1 MGP_AJ_G0026574.1 mouse_genomes_project 2 146806684 146818612 + MGP_AJ_P0058168 Gzf1 protein_coding protein_coding MGP_AJ_T0058169.1 MGP_AJ_G0026574.1 mouse_genomes_project 2 146806872 146809711 + MGP_AJ_P0058169 Gzf1 protein_coding protein_coding MGP_AJ_T0058170.1 MGP_AJ_G0026574.1 mouse_genomes_project 2 146810273 146815878 + Gzf1 protein_coding processed_transcript MGP_AJ_T0054831.1 MGP_AJ_G0025719.1 mouse_genomes_project 2 54443303 54451275 - MGP_AJ_P0054831 Nr4a2 protein_coding protein_coding MGP_AJ_T0054832.1 MGP_AJ_G0025719.1 mouse_genomes_project 2 54443307 54461700 - MGP_AJ_P0054832 Nr4a2 protein_coding nonsense_mediated_decay MGP_AJ_T0054833.1 MGP_AJ_G0025719.1 mouse_genomes_project 2 54448485 54451525 - Nr4a2 protein_coding processed_transcript MGP_AJ_T0054834.1 MGP_AJ_G0025719.1 mouse_genomes_project 2 54449474 54450860 - Nr4a2 protein_coding processed_transcript MGP_AJ_T0056680.1 MGP_AJ_G0026228.1 mouse_genomes_project 2 109318645 109319584 - MGP_AJ_P0056680 protein_coding protein_coding MGP_AJ_T0010357.1 MGP_AJ_G0008479.1 mouse_genomes_project 2 7533926 7534038 + Mir297b miRNA miRNA MGP_AJ_T0054565.1 MGP_AJ_G0025677.1 mouse_genomes_project 2 35024272 35509040 - MGP_AJ_P0054565 Dennd1a protein_coding protein_coding MGP_AJ_T0054566.1 MGP_AJ_G0025677.1 mouse_genomes_project 2 35026353 35078503 - MGP_AJ_P0054566 Dennd1a protein_coding protein_coding MGP_AJ_T0054567.1 MGP_AJ_G0025677.1 mouse_genomes_project 2 35042998 35509055 - MGP_AJ_P0054567 Dennd1a protein_coding nonsense_mediated_decay MGP_AJ_T0054568.1 MGP_AJ_G0025677.1 mouse_genomes_project 2 35162753 35509042 - MGP_AJ_P0054568 Dennd1a protein_coding nonsense_mediated_decay MGP_AJ_T0054569.1 MGP_AJ_G0025677.1 mouse_genomes_project 2 35162798 35508853 - MGP_AJ_P0054569 Dennd1a protein_coding protein_coding MGP_AJ_T0054570.1 MGP_AJ_G0025677.1 mouse_genomes_project 2 35248107 35389289 - Dennd1a protein_coding retained_intron MGP_AJ_T0054571.1 MGP_AJ_G0025677.1 mouse_genomes_project 2 35270185 35509023 - MGP_AJ_P0054571 Dennd1a protein_coding nonsense_mediated_decay MGP_AJ_T0054572.1 MGP_AJ_G0025677.1 mouse_genomes_project 2 35350244 35508883 - MGP_AJ_P0054572 Dennd1a protein_coding nonsense_mediated_decay MGP_AJ_T0054573.1 MGP_AJ_G0025677.1 mouse_genomes_project 2 35382462 35464731 - Dennd1a protein_coding retained_intron MGP_AJ_T0054574.1 MGP_AJ_G0025677.1 mouse_genomes_project 2 35386945 35391027 - Dennd1a protein_coding retained_intron MGP_AJ_T0054575.1 MGP_AJ_G0025677.1 mouse_genomes_project 2 35458624 35508879 - Dennd1a protein_coding retained_intron MGP_AJ_T0052325.1 MGP_AJ_G0025283.1 mouse_genomes_project 2 360972 374578 - MGP_AJ_P0052325 Meig1 protein_coding protein_coding MGP_AJ_T0052326.1 MGP_AJ_G0025283.1 mouse_genomes_project 2 360972 370949 - MGP_AJ_P0052326 Meig1 protein_coding protein_coding MGP_AJ_T0052327.1 MGP_AJ_G0025283.1 mouse_genomes_project 2 360975 370971 - MGP_AJ_P0052327 Meig1 protein_coding protein_coding MGP_AJ_T0052328.1 MGP_AJ_G0025283.1 mouse_genomes_project 2 360976 371059 - MGP_AJ_P0052328 Meig1 protein_coding protein_coding MGP_AJ_T0052329.1 MGP_AJ_G0025283.1 mouse_genomes_project 2 361039 370511 - MGP_AJ_P0052329 Meig1 protein_coding protein_coding MGP_AJ_T0052330.1 MGP_AJ_G0025283.1 mouse_genomes_project 2 361196 374524 - MGP_AJ_P0052330 Meig1 protein_coding protein_coding MGP_AJ_T0007261.1 MGP_AJ_G0005951.1 mouse_genomes_project 2 82610653 82620697 + Gm13715 lincRNA lincRNA MGP_AJ_T0102514.1 MGP_AJ_G0040256.1 mouse_genomes_project 2 119920717 119923072 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0055824.1 MGP_AJ_G0025971.1 mouse_genomes_project 2 84730583 84731579 + MGP_AJ_P0055824 Olfr1116 protein_coding protein_coding MGP_AJ_T0053082.1 MGP_AJ_G0025411.1 mouse_genomes_project 2 22250182 22251554 - Ssna1 protein_coding processed_transcript MGP_AJ_T0053083.1 MGP_AJ_G0025411.1 mouse_genomes_project 2 22250182 22251560 - MGP_AJ_P0053083 Ssna1 protein_coding protein_coding MGP_AJ_T0053084.1 MGP_AJ_G0025411.1 mouse_genomes_project 2 22250229 22251582 - Ssna1 protein_coding processed_transcript MGP_AJ_T0053085.1 MGP_AJ_G0025411.1 mouse_genomes_project 2 22250849 22251548 - Ssna1 protein_coding processed_transcript MGP_AJ_T0013471.1 MGP_AJ_G0011566.1 mouse_genomes_project 2 23007903 23008539 - processed_pseudogene processed_pseudogene MGP_AJ_T0059115.1 MGP_AJ_G0026800.1 mouse_genomes_project 2 162547737 162575318 + MGP_AJ_P0059115 Pabpc1l protein_coding protein_coding MGP_AJ_T0059116.1 MGP_AJ_G0026800.1 mouse_genomes_project 2 162554179 162565385 + Pabpc1l protein_coding processed_transcript MGP_AJ_T0059117.1 MGP_AJ_G0026800.1 mouse_genomes_project 2 162560093 162565612 + Pabpc1l protein_coding processed_transcript MGP_AJ_T0059118.1 MGP_AJ_G0026800.1 mouse_genomes_project 2 162571208 162575318 + Pabpc1l protein_coding processed_transcript MGP_AJ_T0059119.1 MGP_AJ_G0026800.1 mouse_genomes_project 2 162572793 162574947 + Pabpc1l protein_coding processed_transcript MGP_AJ_T0053500.1 MGP_AJ_G0025489.1 mouse_genomes_project 2 24214299 24258614 - Sardh protein_coding processed_transcript MGP_AJ_T0053501.1 MGP_AJ_G0025489.1 mouse_genomes_project 2 24214299 24273865 - MGP_AJ_P0053501 Sardh protein_coding protein_coding MGP_AJ_T0053502.1 MGP_AJ_G0025489.1 mouse_genomes_project 2 24215103 24218167 - Sardh protein_coding retained_intron MGP_AJ_T0053503.1 MGP_AJ_G0025489.1 mouse_genomes_project 2 24215288 24235838 - Sardh protein_coding processed_transcript MGP_AJ_T0053504.1 MGP_AJ_G0025489.1 mouse_genomes_project 2 24222612 24244925 - Sardh protein_coding retained_intron MGP_AJ_T0053505.1 MGP_AJ_G0025489.1 mouse_genomes_project 2 24236943 24241518 - Sardh protein_coding processed_transcript MGP_AJ_T0053506.1 MGP_AJ_G0025489.1 mouse_genomes_project 2 24236979 24251133 - Sardh protein_coding retained_intron MGP_AJ_T0053507.1 MGP_AJ_G0025489.1 mouse_genomes_project 2 24267387 24273447 - MGP_AJ_P0053507 Sardh protein_coding protein_coding MGP_AJ_T0053508.1 MGP_AJ_G0025489.1 mouse_genomes_project 2 24267405 24274936 - MGP_AJ_P0053508 Sardh protein_coding protein_coding MGP_AJ_T0053509.1 MGP_AJ_G0025489.1 mouse_genomes_project 2 24270204 24274013 - MGP_AJ_P0053509 Sardh protein_coding protein_coding MGP_AJ_T0056540.1 MGP_AJ_G0026183.1 mouse_genomes_project 2 102417649 102479663 - MGP_AJ_P0056540 Qser1 protein_coding protein_coding MGP_AJ_T0055819.1 MGP_AJ_G0025966.1 mouse_genomes_project 2 84543012 84543951 - MGP_AJ_P0055819 Olfr1109 protein_coding protein_coding MGP_AJ_T0052795.1 MGP_AJ_G0025363.1 mouse_genomes_project 2 16938884 17780606 + MGP_AJ_P0052795 Etl4 protein_coding protein_coding MGP_AJ_T0052796.1 MGP_AJ_G0025363.1 mouse_genomes_project 2 17314067 17696467 + MGP_AJ_P0052796 Etl4 protein_coding protein_coding MGP_AJ_T0052797.1 MGP_AJ_G0025363.1 mouse_genomes_project 2 17314067 17848724 + MGP_AJ_P0052797 Etl4 protein_coding protein_coding MGP_AJ_T0052798.1 MGP_AJ_G0025363.1 mouse_genomes_project 2 17370670 17696333 + MGP_AJ_P0052798 Etl4 protein_coding protein_coding MGP_AJ_T0052799.1 MGP_AJ_G0025363.1 mouse_genomes_project 2 17539976 17848713 + MGP_AJ_P0052799 Etl4 protein_coding protein_coding MGP_AJ_T0052800.1 MGP_AJ_G0025363.1 mouse_genomes_project 2 17539976 17848713 + MGP_AJ_P0052800 Etl4 protein_coding protein_coding MGP_AJ_T0052801.1 MGP_AJ_G0025363.1 mouse_genomes_project 2 17550107 17848074 + MGP_AJ_P0052801 Etl4 protein_coding protein_coding MGP_AJ_T0052802.1 MGP_AJ_G0025363.1 mouse_genomes_project 2 17550127 17747335 + Etl4 protein_coding retained_intron MGP_AJ_T0052803.1 MGP_AJ_G0025363.1 mouse_genomes_project 2 17550144 17848725 + MGP_AJ_P0052803 Etl4 protein_coding protein_coding MGP_AJ_T0052804.1 MGP_AJ_G0025363.1 mouse_genomes_project 2 17578093 17745002 + Etl4 protein_coding processed_transcript MGP_AJ_T0052805.1 MGP_AJ_G0025363.1 mouse_genomes_project 2 17578135 17696731 + Etl4 protein_coding processed_transcript MGP_AJ_T0052806.1 MGP_AJ_G0025363.1 mouse_genomes_project 2 17590046 17745092 + Etl4 protein_coding processed_transcript MGP_AJ_T0052807.1 MGP_AJ_G0025363.1 mouse_genomes_project 2 17748767 17779776 + Etl4 protein_coding processed_transcript MGP_AJ_T0052808.1 MGP_AJ_G0025363.1 mouse_genomes_project 2 17757810 17841600 + Etl4 protein_coding retained_intron MGP_AJ_T0052809.1 MGP_AJ_G0025363.1 mouse_genomes_project 2 17757810 17821439 + Etl4 protein_coding retained_intron MGP_AJ_T0052810.1 MGP_AJ_G0025363.1 mouse_genomes_project 2 17758057 17846379 + MGP_AJ_P0052810 Etl4 protein_coding protein_coding MGP_AJ_T0052811.1 MGP_AJ_G0025363.1 mouse_genomes_project 2 17773192 17848902 + MGP_AJ_P0052811 Etl4 protein_coding protein_coding MGP_AJ_T0052812.1 MGP_AJ_G0025363.1 mouse_genomes_project 2 17773192 17848543 + MGP_AJ_P0052812 Etl4 protein_coding protein_coding MGP_AJ_T0052813.1 MGP_AJ_G0025363.1 mouse_genomes_project 2 17837013 17847070 + Etl4 protein_coding processed_transcript MGP_AJ_T0052814.1 MGP_AJ_G0025363.1 mouse_genomes_project 2 17845642 17848713 + Etl4 protein_coding retained_intron MGP_AJ_T0001020.1 MGP_AJ_G0000951.1 mouse_genomes_project 2 3935341 3945612 + TEC TEC MGP_AJ_T0007140.1 MGP_AJ_G0005855.1 mouse_genomes_project 2 6348099 6404887 + Gm13219 lincRNA lincRNA MGP_AJ_T0007141.1 MGP_AJ_G0005855.1 mouse_genomes_project 2 6348158 6444323 + Gm13219 lincRNA lincRNA MGP_AJ_T0007142.1 MGP_AJ_G0005855.1 mouse_genomes_project 2 6348188 6406242 + Gm13219 lincRNA lincRNA MGP_AJ_T0058445.1 MGP_AJ_G0026662.1 mouse_genomes_project 2 151969069 152009180 + MGP_AJ_P0058445 Dnmt3b protein_coding protein_coding MGP_AJ_T0058446.1 MGP_AJ_G0026662.1 mouse_genomes_project 2 151969069 152009180 + MGP_AJ_P0058446 Dnmt3b protein_coding protein_coding MGP_AJ_T0058447.1 MGP_AJ_G0026662.1 mouse_genomes_project 2 151969072 152009180 + MGP_AJ_P0058447 Dnmt3b protein_coding protein_coding MGP_AJ_T0058448.1 MGP_AJ_G0026662.1 mouse_genomes_project 2 151969072 152009180 + MGP_AJ_P0058448 Dnmt3b protein_coding protein_coding MGP_AJ_T0058449.1 MGP_AJ_G0026662.1 mouse_genomes_project 2 151969073 152009176 + MGP_AJ_P0058449 Dnmt3b protein_coding protein_coding MGP_AJ_T0058450.1 MGP_AJ_G0026662.1 mouse_genomes_project 2 151969236 152008767 + MGP_AJ_P0058450 Dnmt3b protein_coding protein_coding MGP_AJ_T0058451.1 MGP_AJ_G0026662.1 mouse_genomes_project 2 151981522 152009185 + MGP_AJ_P0058451 Dnmt3b protein_coding protein_coding MGP_AJ_T0058452.1 MGP_AJ_G0026662.1 mouse_genomes_project 2 151986087 151988259 + Dnmt3b protein_coding retained_intron MGP_AJ_T0058453.1 MGP_AJ_G0026662.1 mouse_genomes_project 2 151989675 151990725 + Dnmt3b protein_coding retained_intron MGP_AJ_T0013585.1 MGP_AJ_G0011680.1 mouse_genomes_project 2 66612283 66612786 + processed_pseudogene processed_pseudogene MGP_AJ_T0013424.1 MGP_AJ_G0011519.1 mouse_genomes_project 2 8121167 8122101 + processed_pseudogene processed_pseudogene MGP_AJ_T0059794.1 MGP_AJ_G0026972.1 mouse_genomes_project 2 179787679 179807706 - MGP_AJ_P0059794 Nkain4 protein_coding protein_coding MGP_AJ_T0059795.1 MGP_AJ_G0026972.1 mouse_genomes_project 2 179787679 179807706 - MGP_AJ_P0059795 Nkain4 protein_coding protein_coding MGP_AJ_T0059796.1 MGP_AJ_G0026972.1 mouse_genomes_project 2 179787679 179796079 - MGP_AJ_P0059796 Nkain4 protein_coding protein_coding MGP_AJ_T0059797.1 MGP_AJ_G0026972.1 mouse_genomes_project 2 179788892 179807627 - MGP_AJ_P0059797 Nkain4 protein_coding protein_coding MGP_AJ_T0059798.1 MGP_AJ_G0026972.1 mouse_genomes_project 2 179790088 179807701 - MGP_AJ_P0059798 Nkain4 protein_coding protein_coding MGP_AJ_T0059799.1 MGP_AJ_G0026972.1 mouse_genomes_project 2 179796165 179807326 - Nkain4 protein_coding processed_transcript MGP_AJ_T0059800.1 MGP_AJ_G0026972.1 mouse_genomes_project 2 179796741 179802601 - MGP_AJ_P0059800 Nkain4 protein_coding protein_coding MGP_AJ_T0101038.1 MGP_AJ_G0039004.1 mouse_genomes_project 2 54968920 54969071 - Gm25388 snoRNA snoRNA MGP_AJ_T0054152.1 MGP_AJ_G0025585.1 mouse_genomes_project 2 29597228 29603725 + MGP_AJ_P0054152 Naif1 protein_coding protein_coding MGP_AJ_T0013458.1 MGP_AJ_G0011553.1 mouse_genomes_project 2 19602797 19603158 + processed_pseudogene processed_pseudogene MGP_AJ_T0013783.1 MGP_AJ_G0011878.1 mouse_genomes_project 2 139021134 139021619 - processed_pseudogene processed_pseudogene MGP_AJ_T0004076.1 MGP_AJ_G0003612.1 mouse_genomes_project 2 124639879 124648095 + Gm27003 antisense antisense MGP_AJ_T0057658.1 MGP_AJ_G0026459.1 mouse_genomes_project 2 128208836 128216726 - Snrpb protein_coding retained_intron MGP_AJ_T0057659.1 MGP_AJ_G0026459.1 mouse_genomes_project 2 128209057 128216826 - MGP_AJ_P0057659 Snrpb protein_coding protein_coding MGP_AJ_T0057660.1 MGP_AJ_G0026459.1 mouse_genomes_project 2 128209209 128216826 - MGP_AJ_P0057660 Snrpb protein_coding nonsense_mediated_decay MGP_AJ_T0057661.1 MGP_AJ_G0026459.1 mouse_genomes_project 2 128214274 128216757 - Snrpb protein_coding retained_intron MGP_AJ_T0004032.1 MGP_AJ_G0003582.1 mouse_genomes_project 2 82536510 82570586 + Gm13713 antisense antisense MGP_AJ_T0004033.1 MGP_AJ_G0003582.1 mouse_genomes_project 2 82536510 82550656 + Gm13713 antisense antisense MGP_AJ_T0058513.1 MGP_AJ_G0026682.1 mouse_genomes_project 2 152944306 152958926 - MGP_AJ_P0058513 Necab3 protein_coding protein_coding MGP_AJ_T0058514.1 MGP_AJ_G0026682.1 mouse_genomes_project 2 152944306 152958941 - MGP_AJ_P0058514 Necab3 protein_coding protein_coding MGP_AJ_T0058515.1 MGP_AJ_G0026682.1 mouse_genomes_project 2 152944952 152946714 - Necab3 protein_coding retained_intron MGP_AJ_T0058516.1 MGP_AJ_G0026682.1 mouse_genomes_project 2 152946965 152958965 - MGP_AJ_P0058516 Necab3 protein_coding protein_coding MGP_AJ_T0058518.1 MGP_AJ_G0026682.1 mouse_genomes_project 2 152947060 152958919 - Necab3 protein_coding processed_transcript MGP_AJ_T0058522.1 MGP_AJ_G0026682.1 mouse_genomes_project 2 152954374 152958927 - Necab3 protein_coding retained_intron MGP_AJ_T0058523.1 MGP_AJ_G0026682.1 mouse_genomes_project 2 152954752 152957353 - Necab3 protein_coding retained_intron MGP_AJ_T0010389.1 MGP_AJ_G0008511.1 mouse_genomes_project 2 26917631 26917728 - Mir219a-2 miRNA miRNA MGP_AJ_T0053473.1 MGP_AJ_G0025482.1 mouse_genomes_project 2 24001817 24028079 + MGP_AJ_P0053473 Adamts13 protein_coding protein_coding MGP_AJ_T0053474.1 MGP_AJ_G0025482.1 mouse_genomes_project 2 24001894 24033480 + MGP_AJ_P0053474 Adamts13 protein_coding protein_coding MGP_AJ_T0053475.1 MGP_AJ_G0025482.1 mouse_genomes_project 2 24030377 24033297 + Adamts13 protein_coding processed_transcript MGP_AJ_T0054499.1 MGP_AJ_G0025645.1 mouse_genomes_project 2 33705086 33706025 + MGP_AJ_P0054499 Olfr342 protein_coding protein_coding MGP_AJ_T0053264.1 MGP_AJ_G0025449.1 mouse_genomes_project 2 22832090 22834475 + MGP_AJ_P0053264 Lcn9 protein_coding protein_coding MGP_AJ_T0013701.1 MGP_AJ_G0011796.1 mouse_genomes_project 2 102695418 102696207 - processed_pseudogene processed_pseudogene MGP_AJ_T0057011.1 MGP_AJ_G0026321.1 mouse_genomes_project 2 117906316 117973069 - MGP_AJ_P0057011 Ehd4 protein_coding protein_coding MGP_AJ_T0057012.1 MGP_AJ_G0026321.1 mouse_genomes_project 2 117920660 117948159 - Ehd4 protein_coding processed_transcript MGP_AJ_T0057013.1 MGP_AJ_G0026321.1 mouse_genomes_project 2 117920845 117955995 - Ehd4 protein_coding processed_transcript MGP_AJ_T0057014.1 MGP_AJ_G0026321.1 mouse_genomes_project 2 117940883 117972925 - Ehd4 protein_coding processed_transcript MGP_AJ_T0003947.1 MGP_AJ_G0003520.1 mouse_genomes_project 2 28795521 28807598 - Gm13427 antisense antisense MGP_AJ_T0010398.1 MGP_AJ_G0008520.1 mouse_genomes_project 2 29460965 29461075 + Mir199b miRNA miRNA MGP_AJ_T0003906.1 MGP_AJ_G0003489.1 mouse_genomes_project 2 14591039 14591978 + Gm13324 antisense antisense MGP_AJ_T0013519.1 MGP_AJ_G0011614.1 mouse_genomes_project 2 42612501 42612735 + processed_pseudogene processed_pseudogene MGP_AJ_T0055704.1 MGP_AJ_G0025888.1 mouse_genomes_project 2 82233123 82257873 + MGP_AJ_P0055704 Slc43a1 protein_coding protein_coding MGP_AJ_T0055705.1 MGP_AJ_G0025888.1 mouse_genomes_project 2 82233668 82244409 + MGP_AJ_P0055705 Slc43a1 protein_coding protein_coding MGP_AJ_T0055706.1 MGP_AJ_G0025888.1 mouse_genomes_project 2 82233681 82257881 + MGP_AJ_P0055706 Slc43a1 protein_coding protein_coding MGP_AJ_T0055707.1 MGP_AJ_G0025888.1 mouse_genomes_project 2 82233690 82256683 + Slc43a1 protein_coding retained_intron MGP_AJ_T0055708.1 MGP_AJ_G0025888.1 mouse_genomes_project 2 82234471 82257876 + MGP_AJ_P0055708 Slc43a1 protein_coding protein_coding MGP_AJ_T0055709.1 MGP_AJ_G0025888.1 mouse_genomes_project 2 82234897 82257889 + MGP_AJ_P0055709 Slc43a1 protein_coding protein_coding MGP_AJ_T0099806.1 MGP_AJ_G0037772.1 mouse_genomes_project 2 180516041 180516148 + Gm25879 snRNA snRNA MGP_AJ_T0013881.1 MGP_AJ_G0011976.1 mouse_genomes_project 2 173179868 173180229 - processed_pseudogene processed_pseudogene MGP_AJ_T0013635.1 MGP_AJ_G0011730.1 mouse_genomes_project 2 81461090 81461461 - processed_pseudogene processed_pseudogene MGP_AJ_T0013416.1 MGP_AJ_G0011511.1 mouse_genomes_project 2 3124967 3126468 - processed_pseudogene processed_pseudogene MGP_AJ_T0055799.1 MGP_AJ_G0025947.1 mouse_genomes_project 2 84061169 84063137 - MGP_AJ_P0055799 Olfr1084 protein_coding protein_coding MGP_AJ_T0010433.1 MGP_AJ_G0008555.1 mouse_genomes_project 2 91060431 91060510 - Mir7001 miRNA miRNA MGP_AJ_T0013852.1 MGP_AJ_G0011947.1 mouse_genomes_project 2 156983151 156983343 - processed_pseudogene processed_pseudogene MGP_AJ_T0007249.1 MGP_AJ_G0005941.1 mouse_genomes_project 2 72848601 72854414 - Gm13660 lincRNA lincRNA MGP_AJ_T0007318.1 MGP_AJ_G0005996.1 mouse_genomes_project 2 115888060 115888657 - Gm29233 lincRNA lincRNA MGP_AJ_T0055785.1 MGP_AJ_G0025934.1 mouse_genomes_project 2 83707082 83708021 + MGP_AJ_P0055785 Olfr1052 protein_coding protein_coding MGP_AJ_T0013869.1 MGP_AJ_G0011964.1 mouse_genomes_project 2 165611829 165613511 - processed_pseudogene processed_pseudogene MGP_AJ_T0013790.1 MGP_AJ_G0011885.1 mouse_genomes_project 2 141930238 141930666 + processed_pseudogene processed_pseudogene MGP_AJ_T0013602.1 MGP_AJ_G0011697.1 mouse_genomes_project 2 71353164 71354188 - processed_pseudogene processed_pseudogene MGP_AJ_T0013683.1 MGP_AJ_G0011778.1 mouse_genomes_project 2 99165401 99165612 + processed_pseudogene processed_pseudogene MGP_AJ_T0055755.1 MGP_AJ_G0025905.1 mouse_genomes_project 2 83046553 83070964 - MGP_AJ_P0055755 Olfr1006 protein_coding protein_coding MGP_AJ_T0052468.1 MGP_AJ_G0025309.1 mouse_genomes_project 2 3533015 4393126 - MGP_AJ_P0052468 Celf2 protein_coding protein_coding MGP_AJ_T0052469.1 MGP_AJ_G0025309.1 mouse_genomes_project 2 3533026 3878252 - MGP_AJ_P0052469 Celf2 protein_coding protein_coding MGP_AJ_T0052470.1 MGP_AJ_G0025309.1 mouse_genomes_project 2 3533026 3878252 - MGP_AJ_P0052470 Celf2 protein_coding protein_coding MGP_AJ_T0052471.1 MGP_AJ_G0025309.1 mouse_genomes_project 2 3533026 3714943 - MGP_AJ_P0052471 Celf2 protein_coding protein_coding MGP_AJ_T0052472.1 MGP_AJ_G0025309.1 mouse_genomes_project 2 3535190 3878252 - MGP_AJ_P0052472 Celf2 protein_coding protein_coding MGP_AJ_T0052473.1 MGP_AJ_G0025309.1 mouse_genomes_project 2 3536746 4072653 - MGP_AJ_P0052473 Celf2 protein_coding protein_coding MGP_AJ_T0052474.1 MGP_AJ_G0025309.1 mouse_genomes_project 2 3538124 3878203 - MGP_AJ_P0052474 Celf2 protein_coding protein_coding MGP_AJ_T0052475.1 MGP_AJ_G0025309.1 mouse_genomes_project 2 3538158 3714943 - MGP_AJ_P0052475 Celf2 protein_coding protein_coding MGP_AJ_T0052476.1 MGP_AJ_G0025309.1 mouse_genomes_project 2 3538158 4072593 - MGP_AJ_P0052476 Celf2 protein_coding protein_coding MGP_AJ_T0052477.1 MGP_AJ_G0025309.1 mouse_genomes_project 2 3538952 3715256 - MGP_AJ_P0052477 Celf2 protein_coding protein_coding MGP_AJ_T0052478.1 MGP_AJ_G0025309.1 mouse_genomes_project 2 3539557 3714941 - MGP_AJ_P0052478 Celf2 protein_coding protein_coding MGP_AJ_T0052479.1 MGP_AJ_G0025309.1 mouse_genomes_project 2 3539557 3714941 - MGP_AJ_P0052479 Celf2 protein_coding protein_coding MGP_AJ_T0052480.1 MGP_AJ_G0025309.1 mouse_genomes_project 2 3539651 3878202 - MGP_AJ_P0052480 Celf2 protein_coding protein_coding MGP_AJ_T0052481.1 MGP_AJ_G0025309.1 mouse_genomes_project 2 3540176 3865855 - MGP_AJ_P0052481 Celf2 protein_coding nonsense_mediated_decay MGP_AJ_T0052482.1 MGP_AJ_G0025309.1 mouse_genomes_project 2 3540189 3586856 - Celf2 protein_coding processed_transcript MGP_AJ_T0052483.1 MGP_AJ_G0025309.1 mouse_genomes_project 2 3547206 4393019 - MGP_AJ_P0052483 Celf2 protein_coding protein_coding MGP_AJ_T0052484.1 MGP_AJ_G0025309.1 mouse_genomes_project 2 3579653 3714943 - Celf2 protein_coding retained_intron MGP_AJ_T0052485.1 MGP_AJ_G0025309.1 mouse_genomes_project 2 3598186 3610203 - Celf2 protein_coding processed_transcript MGP_AJ_T0052486.1 MGP_AJ_G0025309.1 mouse_genomes_project 2 3601780 3877884 - Celf2 protein_coding processed_transcript MGP_AJ_T0052487.1 MGP_AJ_G0025309.1 mouse_genomes_project 2 3609751 4393324 - MGP_AJ_P0052487 Celf2 protein_coding protein_coding MGP_AJ_T0052488.1 MGP_AJ_G0025309.1 mouse_genomes_project 2 3614261 3878148 - Celf2 protein_coding retained_intron MGP_AJ_T0052489.1 MGP_AJ_G0025309.1 mouse_genomes_project 2 3617550 3715544 - Celf2 protein_coding retained_intron MGP_AJ_T0052490.1 MGP_AJ_G0025309.1 mouse_genomes_project 2 3618726 3865230 - MGP_AJ_P0052490 Celf2 protein_coding protein_coding MGP_AJ_T0052491.1 MGP_AJ_G0025309.1 mouse_genomes_project 2 3654086 3878148 - Celf2 protein_coding retained_intron MGP_AJ_T0052492.1 MGP_AJ_G0025309.1 mouse_genomes_project 2 3657796 4072558 - MGP_AJ_P0052492 Celf2 protein_coding protein_coding MGP_AJ_T0052493.1 MGP_AJ_G0025309.1 mouse_genomes_project 2 3714783 3715537 - MGP_AJ_P0052493 Celf2 protein_coding protein_coding MGP_AJ_T0052494.1 MGP_AJ_G0025309.1 mouse_genomes_project 2 4068719 4072664 - Celf2 protein_coding processed_transcript MGP_AJ_T0052495.1 MGP_AJ_G0025309.1 mouse_genomes_project 2 4391201 4490623 - Celf2 protein_coding processed_transcript MGP_AJ_T0004126.1 MGP_AJ_G0003646.1 mouse_genomes_project 2 150146774 150148420 - Rspo4os antisense antisense MGP_AJ_T0057797.1 MGP_AJ_G0026490.1 mouse_genomes_project 2 129233435 129244939 + MGP_AJ_P0057797 Cdc25b protein_coding protein_coding MGP_AJ_T0057798.1 MGP_AJ_G0026490.1 mouse_genomes_project 2 129233444 129244941 + MGP_AJ_P0057798 Cdc25b protein_coding protein_coding MGP_AJ_T0057799.1 MGP_AJ_G0026490.1 mouse_genomes_project 2 129234644 129238387 + Cdc25b protein_coding retained_intron MGP_AJ_T0057800.1 MGP_AJ_G0026490.1 mouse_genomes_project 2 129237818 129238571 + Cdc25b protein_coding retained_intron MGP_AJ_T0057801.1 MGP_AJ_G0026490.1 mouse_genomes_project 2 129238211 129239861 + Cdc25b protein_coding retained_intron MGP_AJ_T0057802.1 MGP_AJ_G0026490.1 mouse_genomes_project 2 129238281 129239748 + Cdc25b protein_coding retained_intron MGP_AJ_T0057803.1 MGP_AJ_G0026490.1 mouse_genomes_project 2 129239342 129240875 + Cdc25b protein_coding retained_intron MGP_AJ_T0013556.1 MGP_AJ_G0011651.1 mouse_genomes_project 2 54958902 54959079 - processed_pseudogene processed_pseudogene MGP_AJ_T0101024.1 MGP_AJ_G0038990.1 mouse_genomes_project 2 29827163 29827300 + Gm26236 snoRNA snoRNA MGP_AJ_T0010478.1 MGP_AJ_G0008600.1 mouse_genomes_project 2 166253843 166253939 - Gm22355 miRNA miRNA MGP_AJ_T0053608.1 MGP_AJ_G0025510.1 mouse_genomes_project 2 25897045 25904151 + Ddx31 protein_coding processed_transcript MGP_AJ_T0053609.1 MGP_AJ_G0025510.1 mouse_genomes_project 2 25897098 25962845 + MGP_AJ_P0053609 Ddx31 protein_coding protein_coding MGP_AJ_T0053610.1 MGP_AJ_G0025510.1 mouse_genomes_project 2 25901541 25912867 + Ddx31 protein_coding processed_transcript MGP_AJ_T0053611.1 MGP_AJ_G0025510.1 mouse_genomes_project 2 25913776 25916713 + Ddx31 protein_coding processed_transcript MGP_AJ_T0010361.1 MGP_AJ_G0008483.1 mouse_genomes_project 2 7536028 7536122 + Mir466n miRNA miRNA MGP_AJ_T0013516.1 MGP_AJ_G0011611.1 mouse_genomes_project 2 38251719 38252072 + processed_pseudogene processed_pseudogene MGP_AJ_T0055466.1 MGP_AJ_G0025843.1 mouse_genomes_project 2 74032767 74055287 - MGP_AJ_P0055466 Prkra protein_coding protein_coding MGP_AJ_T0055467.1 MGP_AJ_G0025843.1 mouse_genomes_project 2 74043129 74047068 - Prkra protein_coding processed_transcript MGP_AJ_T0055102.1 MGP_AJ_G0025765.1 mouse_genomes_project 2 64714614 64795038 + MGP_AJ_P0055102 Xirp2 protein_coding protein_coding MGP_AJ_T0055103.1 MGP_AJ_G0025765.1 mouse_genomes_project 2 64714614 64795046 + MGP_AJ_P0055103 Xirp2 protein_coding protein_coding MGP_AJ_T0013722.1 MGP_AJ_G0011817.1 mouse_genomes_project 2 109667873 109669626 + processed_pseudogene processed_pseudogene MGP_AJ_T0055859.1 MGP_AJ_G0025996.1 mouse_genomes_project 2 85356800 85357778 + MGP_AJ_P0055859 Olfr1145 protein_coding protein_coding MGP_AJ_T0013730.1 MGP_AJ_G0011825.1 mouse_genomes_project 2 115001915 115002474 + processed_pseudogene processed_pseudogene MGP_AJ_T0004142.1 MGP_AJ_G0003661.1 mouse_genomes_project 2 156059367 156060571 - Gm14286 antisense antisense MGP_AJ_T0004139.1 MGP_AJ_G0003658.1 mouse_genomes_project 2 154291262 154292428 + Gm16098 antisense antisense MGP_AJ_T0102455.1 MGP_AJ_G0040197.1 mouse_genomes_project 2 8968879 8978561 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0099764.1 MGP_AJ_G0037730.1 mouse_genomes_project 2 60742461 60742568 - Gm23503 snRNA snRNA MGP_AJ_T0017778.1 MGP_AJ_G0015400.1 mouse_genomes_project 2 67345384 67348891 + Gm13631 processed_transcript processed_transcript MGP_AJ_T0058791.1 MGP_AJ_G0026730.1 mouse_genomes_project 2 154895542 154978082 + Epb41l1 protein_coding processed_transcript MGP_AJ_T0058792.1 MGP_AJ_G0026730.1 mouse_genomes_project 2 154895574 155000143 + MGP_AJ_P0058792 Epb41l1 protein_coding protein_coding MGP_AJ_T0058793.1 MGP_AJ_G0026730.1 mouse_genomes_project 2 154951073 154975328 + Epb41l1 protein_coding processed_transcript MGP_AJ_T0058794.1 MGP_AJ_G0026730.1 mouse_genomes_project 2 154959555 155021800 + MGP_AJ_P0058794 Epb41l1 protein_coding protein_coding MGP_AJ_T0058795.1 MGP_AJ_G0026730.1 mouse_genomes_project 2 154982047 154990372 + Epb41l1 protein_coding processed_transcript MGP_AJ_T0058796.1 MGP_AJ_G0026730.1 mouse_genomes_project 2 155011014 155017582 + Epb41l1 protein_coding retained_intron MGP_AJ_T0058797.1 MGP_AJ_G0026730.1 mouse_genomes_project 2 155014864 155017922 + Epb41l1 protein_coding processed_transcript MGP_AJ_T0052331.1 MGP_AJ_G0025284.1 mouse_genomes_project 2 376060 414551 + MGP_AJ_P0052331 Dclre1c protein_coding protein_coding MGP_AJ_T0052332.1 MGP_AJ_G0025284.1 mouse_genomes_project 2 376060 417570 + MGP_AJ_P0052332 Dclre1c protein_coding protein_coding MGP_AJ_T0052333.1 MGP_AJ_G0025284.1 mouse_genomes_project 2 376079 391608 + Dclre1c protein_coding processed_transcript MGP_AJ_T0052334.1 MGP_AJ_G0025284.1 mouse_genomes_project 2 376079 407315 + MGP_AJ_P0052334 Dclre1c protein_coding protein_coding MGP_AJ_T0052335.1 MGP_AJ_G0025284.1 mouse_genomes_project 2 376094 391646 + Dclre1c protein_coding processed_transcript MGP_AJ_T0052336.1 MGP_AJ_G0025284.1 mouse_genomes_project 2 376094 414543 + MGP_AJ_P0052336 Dclre1c protein_coding protein_coding MGP_AJ_T0052337.1 MGP_AJ_G0025284.1 mouse_genomes_project 2 376131 395429 + Dclre1c protein_coding retained_intron MGP_AJ_T0052338.1 MGP_AJ_G0025284.1 mouse_genomes_project 2 394051 412361 + MGP_AJ_P0052338 Dclre1c protein_coding protein_coding MGP_AJ_T0052339.1 MGP_AJ_G0025284.1 mouse_genomes_project 2 406171 407090 + Dclre1c protein_coding processed_transcript MGP_AJ_T0057314.1 MGP_AJ_G0026374.1 mouse_genomes_project 2 120178318 120182978 - MGP_AJ_P0057314 Duoxa1 protein_coding protein_coding MGP_AJ_T0057315.1 MGP_AJ_G0026374.1 mouse_genomes_project 2 120179678 120189689 - MGP_AJ_P0057315 Duoxa1 protein_coding protein_coding MGP_AJ_T0057316.1 MGP_AJ_G0026374.1 mouse_genomes_project 2 120179681 120181841 - Duoxa1 protein_coding processed_transcript MGP_AJ_T0057317.1 MGP_AJ_G0026374.1 mouse_genomes_project 2 120179874 120182956 - MGP_AJ_P0057317 Duoxa1 protein_coding protein_coding MGP_AJ_T0057318.1 MGP_AJ_G0026374.1 mouse_genomes_project 2 120180898 120189726 - MGP_AJ_P0057318 Duoxa1 protein_coding protein_coding MGP_AJ_T0057319.1 MGP_AJ_G0026374.1 mouse_genomes_project 2 120181344 120189640 - MGP_AJ_P0057319 Duoxa1 protein_coding protein_coding MGP_AJ_T0057320.1 MGP_AJ_G0026374.1 mouse_genomes_project 2 120181723 120189647 - MGP_AJ_P0057320 Duoxa1 protein_coding protein_coding MGP_AJ_T0007166.1 MGP_AJ_G0005874.1 mouse_genomes_project 2 23151558 23155248 - C330006A16Rik lincRNA lincRNA MGP_AJ_T0007167.1 MGP_AJ_G0005874.1 mouse_genomes_project 2 23153109 23153529 - C330006A16Rik lincRNA lincRNA MGP_AJ_T0058181.1 MGP_AJ_G0026580.1 mouse_genomes_project 2 146913947 146920799 + MGP_AJ_P0058181 Cst8 protein_coding protein_coding MGP_AJ_T0058182.1 MGP_AJ_G0026580.1 mouse_genomes_project 2 146913996 146920799 + MGP_AJ_P0058182 Cst8 protein_coding protein_coding MGP_AJ_T0058183.1 MGP_AJ_G0026580.1 mouse_genomes_project 2 146914065 146920799 + Cst8 protein_coding processed_transcript MGP_AJ_T0052433.1 MGP_AJ_G0025301.1 mouse_genomes_project 2 2837674 2864546 + MGP_AJ_P0052433 Nudt5 protein_coding protein_coding MGP_AJ_T0052434.1 MGP_AJ_G0025301.1 mouse_genomes_project 2 2837689 2861392 + MGP_AJ_P0052434 Nudt5 protein_coding protein_coding MGP_AJ_T0052435.1 MGP_AJ_G0025301.1 mouse_genomes_project 2 2837908 2849978 + Nudt5 protein_coding retained_intron MGP_AJ_T0052436.1 MGP_AJ_G0025301.1 mouse_genomes_project 2 2837908 2857108 + MGP_AJ_P0052436 Nudt5 protein_coding protein_coding MGP_AJ_T0052437.1 MGP_AJ_G0025301.1 mouse_genomes_project 2 2837945 2855048 + MGP_AJ_P0052437 Nudt5 protein_coding protein_coding MGP_AJ_T0052438.1 MGP_AJ_G0025301.1 mouse_genomes_project 2 2840790 2853895 + Nudt5 protein_coding processed_transcript MGP_AJ_T0001071.1 MGP_AJ_G0001002.1 mouse_genomes_project 2 35724716 35729573 + TEC TEC MGP_AJ_T0056042.1 MGP_AJ_G0026100.1 mouse_genomes_project 2 88661308 88666738 + MGP_AJ_P0056042 Psmc3 protein_coding protein_coding MGP_AJ_T0056043.1 MGP_AJ_G0026100.1 mouse_genomes_project 2 88661354 88673665 + MGP_AJ_P0056043 Psmc3 protein_coding protein_coding MGP_AJ_T0056044.1 MGP_AJ_G0026100.1 mouse_genomes_project 2 88661394 88663235 + Psmc3 protein_coding processed_transcript MGP_AJ_T0056045.1 MGP_AJ_G0026100.1 mouse_genomes_project 2 88661399 88666738 + MGP_AJ_P0056045 Psmc3 protein_coding protein_coding MGP_AJ_T0056046.1 MGP_AJ_G0026100.1 mouse_genomes_project 2 88661577 88665145 + MGP_AJ_P0056046 Psmc3 protein_coding protein_coding MGP_AJ_T0056047.1 MGP_AJ_G0026100.1 mouse_genomes_project 2 88661600 88664296 + MGP_AJ_P0056047 Psmc3 protein_coding nonsense_mediated_decay MGP_AJ_T0056048.1 MGP_AJ_G0026100.1 mouse_genomes_project 2 88661681 88663018 + Psmc3 protein_coding processed_transcript MGP_AJ_T0056049.1 MGP_AJ_G0026100.1 mouse_genomes_project 2 88661777 88662853 + Psmc3 protein_coding processed_transcript MGP_AJ_T0056050.1 MGP_AJ_G0026100.1 mouse_genomes_project 2 88661872 88663228 + Psmc3 protein_coding processed_transcript MGP_AJ_T0056051.1 MGP_AJ_G0026100.1 mouse_genomes_project 2 88665408 88666740 + Psmc3 protein_coding processed_transcript MGP_AJ_T0013630.1 MGP_AJ_G0011725.1 mouse_genomes_project 2 80810370 80811072 + processed_pseudogene processed_pseudogene MGP_AJ_T0056671.1 MGP_AJ_G0026219.1 mouse_genomes_project 2 108948420 108949644 + MGP_AJ_P0056671 protein_coding protein_coding MGP_AJ_T0056264.1 MGP_AJ_G0026128.1 mouse_genomes_project 2 90017304 90026345 - MGP_AJ_P0056264 Mapk8ip1 protein_coding protein_coding MGP_AJ_T0056265.1 MGP_AJ_G0026128.1 mouse_genomes_project 2 90017308 90034827 - MGP_AJ_P0056265 Mapk8ip1 protein_coding protein_coding MGP_AJ_T0056266.1 MGP_AJ_G0026128.1 mouse_genomes_project 2 90023516 90026346 - Mapk8ip1 protein_coding processed_transcript MGP_AJ_T0099790.1 MGP_AJ_G0037756.1 mouse_genomes_project 2 131639211 131639318 - Gm25258 snRNA snRNA MGP_AJ_T0053167.1 MGP_AJ_G0025425.1 mouse_genomes_project 2 22442614 22444453 + Clic3 protein_coding processed_transcript MGP_AJ_T0053168.1 MGP_AJ_G0025425.1 mouse_genomes_project 2 22442614 22444553 + MGP_AJ_P0053168 Clic3 protein_coding protein_coding MGP_AJ_T0053169.1 MGP_AJ_G0025425.1 mouse_genomes_project 2 22442625 22444553 + MGP_AJ_P0053169 Clic3 protein_coding protein_coding MGP_AJ_T0053170.1 MGP_AJ_G0025425.1 mouse_genomes_project 2 22442667 22444553 + Clic3 protein_coding processed_transcript MGP_AJ_T0053171.1 MGP_AJ_G0025425.1 mouse_genomes_project 2 22442673 22444460 + Clic3 protein_coding processed_transcript MGP_AJ_T0053172.1 MGP_AJ_G0025425.1 mouse_genomes_project 2 22443412 22443992 + Clic3 protein_coding processed_transcript MGP_AJ_T0007360.1 MGP_AJ_G0006030.1 mouse_genomes_project 2 147413538 147418396 + Gm14135 lincRNA lincRNA MGP_AJ_T0013656.1 MGP_AJ_G0011751.1 mouse_genomes_project 2 85419387 85419914 + processed_pseudogene processed_pseudogene MGP_AJ_T0057337.1 MGP_AJ_G0026378.1 mouse_genomes_project 2 120365706 120367251 + protein_coding retained_intron MGP_AJ_T0013482.1 MGP_AJ_G0011577.1 mouse_genomes_project 2 29413519 29413837 + processed_pseudogene processed_pseudogene MGP_AJ_T0057690.1 MGP_AJ_G0026465.1 mouse_genomes_project 2 128444479 128447497 + MGP_AJ_P0057690 Gm28372 protein_coding protein_coding MGP_AJ_T0013523.1 MGP_AJ_G0011618.1 mouse_genomes_project 2 45455982 45456415 + processed_pseudogene processed_pseudogene MGP_AJ_T0013572.1 MGP_AJ_G0011667.1 mouse_genomes_project 2 59978619 59980207 - processed_pseudogene processed_pseudogene MGP_AJ_T0054828.1 MGP_AJ_G0025718.1 mouse_genomes_project 2 52784744 52953590 + MGP_AJ_P0054828 Kcnj3 protein_coding protein_coding MGP_AJ_T0054829.1 MGP_AJ_G0025718.1 mouse_genomes_project 2 52785930 52950973 + MGP_AJ_P0054829 Kcnj3 protein_coding protein_coding MGP_AJ_T0054830.1 MGP_AJ_G0025718.1 mouse_genomes_project 2 52785939 52953584 + MGP_AJ_P0054830 Kcnj3 protein_coding protein_coding MGP_AJ_T0058275.1 MGP_AJ_G0026608.1 mouse_genomes_project 2 149868913 149910828 - MGP_AJ_P0058275 Snph protein_coding protein_coding MGP_AJ_T0058276.1 MGP_AJ_G0026608.1 mouse_genomes_project 2 149868913 149910852 - MGP_AJ_P0058276 Snph protein_coding protein_coding MGP_AJ_T0058277.1 MGP_AJ_G0026608.1 mouse_genomes_project 2 149868928 149910846 - MGP_AJ_P0058277 Snph protein_coding protein_coding MGP_AJ_T0058278.1 MGP_AJ_G0026608.1 mouse_genomes_project 2 149870089 149910872 - MGP_AJ_P0058278 Snph protein_coding protein_coding MGP_AJ_T0058279.1 MGP_AJ_G0026608.1 mouse_genomes_project 2 149875519 149910750 - MGP_AJ_P0058279 Snph protein_coding protein_coding MGP_AJ_T0058280.1 MGP_AJ_G0026608.1 mouse_genomes_project 2 149879180 149910805 - Snph protein_coding retained_intron MGP_AJ_T0058281.1 MGP_AJ_G0026608.1 mouse_genomes_project 2 149879343 149910819 - MGP_AJ_P0058281 Snph protein_coding protein_coding MGP_AJ_T0058282.1 MGP_AJ_G0026608.1 mouse_genomes_project 2 149879360 149910840 - MGP_AJ_P0058282 Snph protein_coding protein_coding MGP_AJ_T0058283.1 MGP_AJ_G0026608.1 mouse_genomes_project 2 149879568 149910852 - Snph protein_coding processed_transcript MGP_AJ_T0058284.1 MGP_AJ_G0026608.1 mouse_genomes_project 2 149899476 149910846 - Snph protein_coding processed_transcript MGP_AJ_T0058285.1 MGP_AJ_G0026608.1 mouse_genomes_project 2 149910011 149910832 - Snph protein_coding retained_intron MGP_AJ_T0007373.1 MGP_AJ_G0006041.1 mouse_genomes_project 2 155051515 155057857 + Gm14168 lincRNA lincRNA MGP_AJ_T0010329.1 MGP_AJ_G0008451.1 mouse_genomes_project 2 6227983 6228060 - Gm23963 miRNA miRNA MGP_AJ_T0004069.1 MGP_AJ_G0003605.1 mouse_genomes_project 2 116767431 116771031 + Gm14089 antisense antisense MGP_AJ_T0052316.1 MGP_AJ_G0025279.1 mouse_genomes_project 2 239405 282776 + MGP_AJ_P0052316 Nmt2 protein_coding protein_coding MGP_AJ_T0052317.1 MGP_AJ_G0025279.1 mouse_genomes_project 2 239429 263195 + Nmt2 protein_coding processed_transcript MGP_AJ_T0052318.1 MGP_AJ_G0025279.1 mouse_genomes_project 2 239445 284929 + MGP_AJ_P0052318 Nmt2 protein_coding protein_coding MGP_AJ_T0059225.1 MGP_AJ_G0026844.1 mouse_genomes_project 2 163365342 163367482 - Spata25 protein_coding processed_transcript MGP_AJ_T0059226.1 MGP_AJ_G0026844.1 mouse_genomes_project 2 163366335 163367491 - MGP_AJ_P0059226 Spata25 protein_coding protein_coding MGP_AJ_T0055861.1 MGP_AJ_G0025998.1 mouse_genomes_project 2 85401605 85402532 + MGP_AJ_P0055861 Olfr1151 protein_coding protein_coding MGP_AJ_T0011512.1 MGP_AJ_G0009634.1 mouse_genomes_project 2 124220338 124220630 - Gm24739 misc_RNA misc_RNA MGP_AJ_T0054406.1 MGP_AJ_G0025626.1 mouse_genomes_project 2 32303597 32324572 + MGP_AJ_P0054406 Cntrl protein_coding protein_coding MGP_AJ_T0054407.1 MGP_AJ_G0025626.1 mouse_genomes_project 2 32303597 32371846 + MGP_AJ_P0054407 Cntrl protein_coding protein_coding MGP_AJ_T0054408.1 MGP_AJ_G0025626.1 mouse_genomes_project 2 32303597 32372558 + MGP_AJ_P0054408 Cntrl protein_coding protein_coding MGP_AJ_T0054409.1 MGP_AJ_G0025626.1 mouse_genomes_project 2 32303724 32372158 + MGP_AJ_P0054409 Cntrl protein_coding protein_coding MGP_AJ_T0054410.1 MGP_AJ_G0025626.1 mouse_genomes_project 2 32321225 32341499 + MGP_AJ_P0054410 Cntrl protein_coding protein_coding MGP_AJ_T0054411.1 MGP_AJ_G0025626.1 mouse_genomes_project 2 32326078 32372558 + MGP_AJ_P0054411 Cntrl protein_coding protein_coding MGP_AJ_T0054412.1 MGP_AJ_G0025626.1 mouse_genomes_project 2 32326078 32354464 + MGP_AJ_P0054412 Cntrl protein_coding protein_coding MGP_AJ_T0054413.1 MGP_AJ_G0025626.1 mouse_genomes_project 2 32326102 32341499 + MGP_AJ_P0054413 Cntrl protein_coding protein_coding MGP_AJ_T0054414.1 MGP_AJ_G0025626.1 mouse_genomes_project 2 32326102 32331530 + MGP_AJ_P0054414 Cntrl protein_coding protein_coding MGP_AJ_T0054415.1 MGP_AJ_G0025626.1 mouse_genomes_project 2 32338925 32341499 + MGP_AJ_P0054415 Cntrl protein_coding protein_coding MGP_AJ_T0054416.1 MGP_AJ_G0025626.1 mouse_genomes_project 2 32354135 32359535 + MGP_AJ_P0054416 Cntrl protein_coding nonsense_mediated_decay MGP_AJ_T0054417.1 MGP_AJ_G0025626.1 mouse_genomes_project 2 32355516 32359963 + Cntrl protein_coding retained_intron MGP_AJ_T0054418.1 MGP_AJ_G0025626.1 mouse_genomes_project 2 32368983 32372547 + Cntrl protein_coding retained_intron MGP_AJ_T0007347.1 MGP_AJ_G0006020.1 mouse_genomes_project 2 135753447 135926567 + Gm14064 lincRNA lincRNA MGP_AJ_T0013745.1 MGP_AJ_G0011840.1 mouse_genomes_project 2 124835761 124836587 + processed_pseudogene processed_pseudogene MGP_AJ_T0057981.1 MGP_AJ_G0026528.1 mouse_genomes_project 2 137600394 137739957 + MGP_AJ_P0057981 Sptlc3 protein_coding protein_coding MGP_AJ_T0057982.1 MGP_AJ_G0026528.1 mouse_genomes_project 2 137600401 137740575 + MGP_AJ_P0057982 Sptlc3 protein_coding protein_coding MGP_AJ_T0054516.1 MGP_AJ_G0025661.1 mouse_genomes_project 2 34198164 34199157 - MGP_AJ_P0054516 Olfr358 protein_coding protein_coding MGP_AJ_T0053375.1 MGP_AJ_G0025466.1 mouse_genomes_project 2 23426646 23462414 - MGP_AJ_P0053375 Sec16a protein_coding protein_coding MGP_AJ_T0053376.1 MGP_AJ_G0025466.1 mouse_genomes_project 2 23426646 23446712 - MGP_AJ_P0053376 Sec16a protein_coding protein_coding MGP_AJ_T0053377.1 MGP_AJ_G0025466.1 mouse_genomes_project 2 23426648 23462416 - MGP_AJ_P0053377 Sec16a protein_coding protein_coding MGP_AJ_T0053378.1 MGP_AJ_G0025466.1 mouse_genomes_project 2 23427503 23430254 - Sec16a protein_coding processed_transcript MGP_AJ_T0053379.1 MGP_AJ_G0025466.1 mouse_genomes_project 2 23427933 23433432 - Sec16a protein_coding processed_transcript MGP_AJ_T0053380.1 MGP_AJ_G0025466.1 mouse_genomes_project 2 23431580 23436956 - Sec16a protein_coding processed_transcript MGP_AJ_T0053381.1 MGP_AJ_G0025466.1 mouse_genomes_project 2 23453177 23456955 - MGP_AJ_P0053381 Sec16a protein_coding protein_coding MGP_AJ_T0053382.1 MGP_AJ_G0025466.1 mouse_genomes_project 2 23459163 23462400 - Sec16a protein_coding processed_transcript MGP_AJ_T0054773.1 MGP_AJ_G0025707.1 mouse_genomes_project 2 49370133 49389491 + MGP_AJ_P0054773 Tnfaip6 protein_coding protein_coding MGP_AJ_T0098661.1 MGP_AJ_G0036645.1 mouse_genomes_project 2 162681435 162681553 - n-R5s207 rRNA rRNA MGP_AJ_T0013718.1 MGP_AJ_G0011813.1 mouse_genomes_project 2 109343525 109344464 - processed_pseudogene processed_pseudogene MGP_AJ_T0056009.1 MGP_AJ_G0026094.1 mouse_genomes_project 2 88453662 88473358 + MGP_AJ_P0056009 Mtch2 protein_coding protein_coding MGP_AJ_T0056010.1 MGP_AJ_G0026094.1 mouse_genomes_project 2 88453685 88471936 + MGP_AJ_P0056010 Mtch2 protein_coding nonsense_mediated_decay MGP_AJ_T0056011.1 MGP_AJ_G0026094.1 mouse_genomes_project 2 88453697 88454822 + Mtch2 protein_coding processed_transcript MGP_AJ_T0056012.1 MGP_AJ_G0026094.1 mouse_genomes_project 2 88453738 88473188 + MGP_AJ_P0056012 Mtch2 protein_coding protein_coding MGP_AJ_T0056013.1 MGP_AJ_G0026094.1 mouse_genomes_project 2 88453760 88458128 + Mtch2 protein_coding retained_intron MGP_AJ_T0056014.1 MGP_AJ_G0026094.1 mouse_genomes_project 2 88453780 88473188 + MGP_AJ_P0056014 Mtch2 protein_coding protein_coding MGP_AJ_T0056015.1 MGP_AJ_G0026094.1 mouse_genomes_project 2 88453794 88471939 + Mtch2 protein_coding processed_transcript MGP_AJ_T0056016.1 MGP_AJ_G0026094.1 mouse_genomes_project 2 88458698 88462255 + Mtch2 protein_coding retained_intron MGP_AJ_T0056017.1 MGP_AJ_G0026094.1 mouse_genomes_project 2 88459333 88463372 + Mtch2 protein_coding retained_intron MGP_AJ_T0056018.1 MGP_AJ_G0026094.1 mouse_genomes_project 2 88467787 88472019 + Mtch2 protein_coding retained_intron MGP_AJ_T0056019.1 MGP_AJ_G0026094.1 mouse_genomes_project 2 88470006 88471936 + Mtch2 protein_coding retained_intron MGP_AJ_T0058235.1 MGP_AJ_G0026600.1 mouse_genomes_project 2 149105637 149126784 + Gins1 protein_coding processed_transcript MGP_AJ_T0058236.1 MGP_AJ_G0026600.1 mouse_genomes_project 2 149109831 149132157 + MGP_AJ_P0058236 Gins1 protein_coding protein_coding MGP_AJ_T0058237.1 MGP_AJ_G0026600.1 mouse_genomes_project 2 149109854 149126978 + Gins1 protein_coding processed_transcript MGP_AJ_T0058238.1 MGP_AJ_G0026600.1 mouse_genomes_project 2 149112966 149128425 + Gins1 protein_coding processed_transcript MGP_AJ_T0055970.1 MGP_AJ_G0026082.1 mouse_genomes_project 2 87643915 87644824 - MGP_AJ_P0055970 Olfr140 protein_coding protein_coding MGP_AJ_T0055971.1 MGP_AJ_G0026082.1 mouse_genomes_project 2 87643915 87656251 - MGP_AJ_P0055971 Olfr140 protein_coding protein_coding MGP_AJ_T0059252.1 MGP_AJ_G0026848.1 mouse_genomes_project 2 163417791 163421692 + Pcif1 protein_coding retained_intron MGP_AJ_T0059253.1 MGP_AJ_G0026848.1 mouse_genomes_project 2 163417852 163432959 + MGP_AJ_P0059253 Pcif1 protein_coding protein_coding MGP_AJ_T0059254.1 MGP_AJ_G0026848.1 mouse_genomes_project 2 163418539 163421603 + Pcif1 protein_coding retained_intron MGP_AJ_T0059255.1 MGP_AJ_G0026848.1 mouse_genomes_project 2 163422425 163423187 + Pcif1 protein_coding retained_intron MGP_AJ_T0007408.1 MGP_AJ_G0006070.1 mouse_genomes_project 2 166449179 166456049 - 1200007C13Rik lincRNA lincRNA MGP_AJ_T0055844.1 MGP_AJ_G0025983.1 mouse_genomes_project 2 85053571 85056273 - MGP_AJ_P0055844 protein_coding protein_coding MGP_AJ_T0013698.1 MGP_AJ_G0011793.1 mouse_genomes_project 2 102244809 102244996 - processed_pseudogene processed_pseudogene MGP_AJ_T0056216.1 MGP_AJ_G0026122.1 mouse_genomes_project 2 89570911 89572882 + MGP_AJ_P0056216 Gm9821 protein_coding protein_coding MGP_AJ_T0057955.1 MGP_AJ_G0026521.1 mouse_genomes_project 2 134157834 134475018 - MGP_AJ_P0057955 Pak7 protein_coding protein_coding MGP_AJ_T0057956.1 MGP_AJ_G0026521.1 mouse_genomes_project 2 134158627 134475040 - MGP_AJ_P0057956 Pak7 protein_coding protein_coding MGP_AJ_T0057957.1 MGP_AJ_G0026521.1 mouse_genomes_project 2 134348010 134475047 - Pak7 protein_coding retained_intron MGP_AJ_T0013797.1 MGP_AJ_G0011892.1 mouse_genomes_project 2 142845601 142847855 + processed_pseudogene processed_pseudogene MGP_AJ_T0007421.1 MGP_AJ_G0006082.1 mouse_genomes_project 2 168137550 168161348 + Gm14249 lincRNA lincRNA MGP_AJ_T0059683.1 MGP_AJ_G0026946.1 mouse_genomes_project 2 178269405 178732066 + MGP_AJ_P0059683 Cdh4 protein_coding protein_coding MGP_AJ_T0059684.1 MGP_AJ_G0026946.1 mouse_genomes_project 2 178269596 178680476 + MGP_AJ_P0059684 Cdh4 protein_coding protein_coding MGP_AJ_T0059685.1 MGP_AJ_G0026946.1 mouse_genomes_project 2 178271169 178613653 + Cdh4 protein_coding processed_transcript MGP_AJ_T0059686.1 MGP_AJ_G0026946.1 mouse_genomes_project 2 178610594 178631390 + Cdh4 protein_coding processed_transcript MGP_AJ_T0059687.1 MGP_AJ_G0026946.1 mouse_genomes_project 2 178726568 178728834 + Cdh4 protein_coding retained_intron MGP_AJ_T0059688.1 MGP_AJ_G0026946.1 mouse_genomes_project 2 178726593 178727378 + MGP_AJ_P0059688 Cdh4 protein_coding protein_coding MGP_AJ_T0059451.1 MGP_AJ_G0026881.1 mouse_genomes_project 2 166098169 166121690 + MGP_AJ_P0059451 Rnf114 protein_coding protein_coding MGP_AJ_T0059452.1 MGP_AJ_G0026881.1 mouse_genomes_project 2 166108612 166121697 + MGP_AJ_P0059452 Rnf114 protein_coding protein_coding MGP_AJ_T0059453.1 MGP_AJ_G0026881.1 mouse_genomes_project 2 166108969 166121688 + MGP_AJ_P0059453 Rnf114 protein_coding nonsense_mediated_decay MGP_AJ_T0007159.1 MGP_AJ_G0005869.1 mouse_genomes_project 2 21267298 21267831 + Gm13411 lincRNA lincRNA MGP_AJ_T0004175.1 MGP_AJ_G0003686.1 mouse_genomes_project 2 169178503 169192179 - Gm16796 antisense antisense MGP_AJ_T0055694.1 MGP_AJ_G0025884.1 mouse_genomes_project 2 82151027 82160837 - MGP_AJ_P0055694 Serping1 protein_coding protein_coding MGP_AJ_T0055695.1 MGP_AJ_G0025884.1 mouse_genomes_project 2 82151146 82160877 - MGP_AJ_P0055695 Serping1 protein_coding protein_coding MGP_AJ_T0055696.1 MGP_AJ_G0025884.1 mouse_genomes_project 2 82158621 82160619 - Serping1 protein_coding processed_transcript MGP_AJ_T0058032.1 MGP_AJ_G0026543.1 mouse_genomes_project 2 142021695 142026580 - Rrbp1 protein_coding processed_transcript MGP_AJ_T0058033.1 MGP_AJ_G0026543.1 mouse_genomes_project 2 142021695 142084662 - MGP_AJ_P0058033 Rrbp1 protein_coding protein_coding MGP_AJ_T0058034.1 MGP_AJ_G0026543.1 mouse_genomes_project 2 142022428 142024037 - Rrbp1 protein_coding processed_transcript MGP_AJ_T0058035.1 MGP_AJ_G0026543.1 mouse_genomes_project 2 142024792 142029484 - Rrbp1 protein_coding processed_transcript MGP_AJ_T0058036.1 MGP_AJ_G0026543.1 mouse_genomes_project 2 142030684 142031947 - Rrbp1 protein_coding processed_transcript MGP_AJ_T0058037.1 MGP_AJ_G0026543.1 mouse_genomes_project 2 142035021 142041909 - Rrbp1 protein_coding processed_transcript MGP_AJ_T0058038.1 MGP_AJ_G0026543.1 mouse_genomes_project 2 142039154 142057370 - Rrbp1 protein_coding processed_transcript MGP_AJ_T0058039.1 MGP_AJ_G0026543.1 mouse_genomes_project 2 142060065 142084662 - MGP_AJ_P0058039 Rrbp1 protein_coding protein_coding MGP_AJ_T0059667.1 MGP_AJ_G0026941.1 mouse_genomes_project 2 176933064 177154816 + MGP_AJ_P0059667 Phactr3 protein_coding protein_coding MGP_AJ_T0059668.1 MGP_AJ_G0026941.1 mouse_genomes_project 2 176933268 177152815 + MGP_AJ_P0059668 Phactr3 protein_coding protein_coding MGP_AJ_T0059669.1 MGP_AJ_G0026941.1 mouse_genomes_project 2 176956604 177152820 + MGP_AJ_P0059669 Phactr3 protein_coding protein_coding MGP_AJ_T0059670.1 MGP_AJ_G0026941.1 mouse_genomes_project 2 176989685 177152815 + MGP_AJ_P0059670 Phactr3 protein_coding protein_coding MGP_AJ_T0059671.1 MGP_AJ_G0026941.1 mouse_genomes_project 2 177143879 177148090 + Phactr3 protein_coding retained_intron MGP_AJ_T0059672.1 MGP_AJ_G0026941.1 mouse_genomes_project 2 177144115 177149154 + Phactr3 protein_coding retained_intron MGP_AJ_T0058307.1 MGP_AJ_G0026618.1 mouse_genomes_project 2 150429084 150434621 + MGP_AJ_P0058307 Tcf15 protein_coding protein_coding MGP_AJ_T0101020.1 MGP_AJ_G0038986.1 mouse_genomes_project 2 23940061 23940132 + Gm24134 snoRNA snoRNA MGP_AJ_T0013637.1 MGP_AJ_G0011732.1 mouse_genomes_project 2 83136016 83136948 + processed_pseudogene processed_pseudogene MGP_AJ_T0099789.1 MGP_AJ_G0037755.1 mouse_genomes_project 2 131376891 131376950 + Gm27449 snRNA snRNA MGP_AJ_T0054511.1 MGP_AJ_G0025656.1 mouse_genomes_project 2 34084112 34085048 - MGP_AJ_P0054511 Olfr353 protein_coding protein_coding MGP_AJ_T0058342.1 MGP_AJ_G0026633.1 mouse_genomes_project 2 150858085 150858286 + MGP_AJ_P0058342 Gm17416 protein_coding protein_coding MGP_AJ_T0013513.1 MGP_AJ_G0011608.1 mouse_genomes_project 2 37446976 37447343 - processed_pseudogene processed_pseudogene MGP_AJ_T0055933.1 MGP_AJ_G0026061.1 mouse_genomes_project 2 87123575 87124628 - MGP_AJ_P0055933 Olfr1242 protein_coding protein_coding MGP_AJ_T0055934.1 MGP_AJ_G0026061.1 mouse_genomes_project 2 87123671 87128498 - MGP_AJ_P0055934 Olfr1242 protein_coding protein_coding MGP_AJ_T0055935.1 MGP_AJ_G0026061.1 mouse_genomes_project 2 87124301 87127988 - Olfr1242 protein_coding processed_transcript MGP_AJ_T0059396.1 MGP_AJ_G0026872.1 mouse_genomes_project 2 165549248 165600407 - MGP_AJ_P0059396 Stau1 protein_coding protein_coding MGP_AJ_T0059397.1 MGP_AJ_G0026872.1 mouse_genomes_project 2 165549846 165557084 - Stau1 protein_coding retained_intron MGP_AJ_T0059398.1 MGP_AJ_G0026872.1 mouse_genomes_project 2 165549846 165600394 - MGP_AJ_P0059398 Stau1 protein_coding protein_coding MGP_AJ_T0059399.1 MGP_AJ_G0026872.1 mouse_genomes_project 2 165549846 165600232 - MGP_AJ_P0059399 Stau1 protein_coding protein_coding MGP_AJ_T0059400.1 MGP_AJ_G0026872.1 mouse_genomes_project 2 165549972 165600428 - MGP_AJ_P0059400 Stau1 protein_coding protein_coding MGP_AJ_T0059401.1 MGP_AJ_G0026872.1 mouse_genomes_project 2 165550945 165552931 - Stau1 protein_coding retained_intron MGP_AJ_T0059402.1 MGP_AJ_G0026872.1 mouse_genomes_project 2 165550991 165567122 - MGP_AJ_P0059402 Stau1 protein_coding nonsense_mediated_decay MGP_AJ_T0059403.1 MGP_AJ_G0026872.1 mouse_genomes_project 2 165551393 165552656 - Stau1 protein_coding retained_intron MGP_AJ_T0059404.1 MGP_AJ_G0026872.1 mouse_genomes_project 2 165554003 165562022 - Stau1 protein_coding retained_intron MGP_AJ_T0059405.1 MGP_AJ_G0026872.1 mouse_genomes_project 2 165554606 165565847 - Stau1 protein_coding retained_intron MGP_AJ_T0059406.1 MGP_AJ_G0026872.1 mouse_genomes_project 2 165565912 165580024 - Stau1 protein_coding processed_transcript MGP_AJ_T0054471.1 MGP_AJ_G0025635.1 mouse_genomes_project 2 33234479 33247560 - MGP_AJ_P0054471 Ndufa8 protein_coding protein_coding MGP_AJ_T0010342.1 MGP_AJ_G0008464.1 mouse_genomes_project 2 7494983 7495082 + Mir466f-3 miRNA miRNA MGP_AJ_T0017806.1 MGP_AJ_G0015421.1 mouse_genomes_project 2 90492546 90550004 - Gm13791 processed_transcript processed_transcript MGP_AJ_T0055179.1 MGP_AJ_G0025782.1 mouse_genomes_project 2 67089974 67095982 + MGP_AJ_P0055179 Phospho2 protein_coding protein_coding MGP_AJ_T0055180.1 MGP_AJ_G0025782.1 mouse_genomes_project 2 67089987 67097552 + MGP_AJ_P0055180 Phospho2 protein_coding protein_coding MGP_AJ_T0055181.1 MGP_AJ_G0025782.1 mouse_genomes_project 2 67090001 67097552 + MGP_AJ_P0055181 Phospho2 protein_coding protein_coding MGP_AJ_T0055182.1 MGP_AJ_G0025782.1 mouse_genomes_project 2 67090011 67092797 + Phospho2 protein_coding processed_transcript MGP_AJ_T0055183.1 MGP_AJ_G0025782.1 mouse_genomes_project 2 67090063 67100434 + Phospho2 protein_coding processed_transcript MGP_AJ_T0055184.1 MGP_AJ_G0025782.1 mouse_genomes_project 2 67091297 67097551 + MGP_AJ_P0055184 Phospho2 protein_coding protein_coding MGP_AJ_T0007356.1 MGP_AJ_G0006028.1 mouse_genomes_project 2 146065352 146098973 - 9030622O22Rik lincRNA lincRNA MGP_AJ_T0007357.1 MGP_AJ_G0006028.1 mouse_genomes_project 2 146095392 146163954 - 9030622O22Rik lincRNA lincRNA MGP_AJ_T0007358.1 MGP_AJ_G0006028.1 mouse_genomes_project 2 146095546 146162023 - 9030622O22Rik lincRNA lincRNA MGP_AJ_T0013807.1 MGP_AJ_G0011902.1 mouse_genomes_project 2 145400301 145401398 + processed_pseudogene processed_pseudogene MGP_AJ_T0055802.1 MGP_AJ_G0025950.1 mouse_genomes_project 2 84110449 84111391 - MGP_AJ_P0055802 Olfr1087 protein_coding protein_coding MGP_AJ_T0013686.1 MGP_AJ_G0011781.1 mouse_genomes_project 2 99831324 99832297 - processed_pseudogene processed_pseudogene MGP_AJ_T0098834.1 MGP_AJ_G0036818.1 mouse_genomes_project 2 104490671 104490794 + Gm22813 scaRNA scaRNA MGP_AJ_T0101032.1 MGP_AJ_G0038998.1 mouse_genomes_project 2 43607275 43607398 + Gm23072 snoRNA snoRNA MGP_AJ_T0057695.1 MGP_AJ_G0026468.1 mouse_genomes_project 2 128456449 128463451 - Pced1a protein_coding processed_transcript MGP_AJ_T0057696.1 MGP_AJ_G0026468.1 mouse_genomes_project 2 128456885 128463481 - MGP_AJ_P0057696 Pced1a protein_coding protein_coding MGP_AJ_T0057697.1 MGP_AJ_G0026468.1 mouse_genomes_project 2 128457403 128463484 - Pced1a protein_coding processed_transcript MGP_AJ_T0057698.1 MGP_AJ_G0026468.1 mouse_genomes_project 2 128457427 128463469 - Pced1a protein_coding retained_intron MGP_AJ_T0057699.1 MGP_AJ_G0026468.1 mouse_genomes_project 2 128458161 128463890 - MGP_AJ_P0057699 Pced1a protein_coding protein_coding MGP_AJ_T0057700.1 MGP_AJ_G0026468.1 mouse_genomes_project 2 128458172 128463904 - Pced1a protein_coding retained_intron MGP_AJ_T0057701.1 MGP_AJ_G0026468.1 mouse_genomes_project 2 128461092 128463513 - Pced1a protein_coding retained_intron MGP_AJ_T0058647.1 MGP_AJ_G0026712.1 mouse_genomes_project 2 154292022 154299353 - MGP_AJ_P0058647 Fam83c protein_coding protein_coding MGP_AJ_T0052457.1 MGP_AJ_G0025306.1 mouse_genomes_project 2 3087042 3122973 - MGP_AJ_P0052457 Proser2 protein_coding protein_coding MGP_AJ_T0052458.1 MGP_AJ_G0025306.1 mouse_genomes_project 2 3089460 3122908 - MGP_AJ_P0052458 Proser2 protein_coding protein_coding MGP_AJ_T0052459.1 MGP_AJ_G0025306.1 mouse_genomes_project 2 3090625 3122901 - MGP_AJ_P0052459 Proser2 protein_coding protein_coding MGP_AJ_T0052460.1 MGP_AJ_G0025306.1 mouse_genomes_project 2 3117573 3122943 - Proser2 protein_coding processed_transcript MGP_AJ_T0059280.1 MGP_AJ_G0026853.1 mouse_genomes_project 2 163597708 163604808 + MGP_AJ_P0059280 Cd40 protein_coding nonsense_mediated_decay MGP_AJ_T0059281.1 MGP_AJ_G0026853.1 mouse_genomes_project 2 163597708 163615011 + MGP_AJ_P0059281 Cd40 protein_coding protein_coding MGP_AJ_T0059282.1 MGP_AJ_G0026853.1 mouse_genomes_project 2 163597717 163613714 + MGP_AJ_P0059282 Cd40 protein_coding protein_coding MGP_AJ_T0059283.1 MGP_AJ_G0026853.1 mouse_genomes_project 2 163597761 163612837 + MGP_AJ_P0059283 Cd40 protein_coding protein_coding MGP_AJ_T0059284.1 MGP_AJ_G0026853.1 mouse_genomes_project 2 163597762 163604865 + MGP_AJ_P0059284 Cd40 protein_coding protein_coding MGP_AJ_T0059285.1 MGP_AJ_G0026853.1 mouse_genomes_project 2 163597785 163613059 + MGP_AJ_P0059285 Cd40 protein_coding nonsense_mediated_decay MGP_AJ_T0059286.1 MGP_AJ_G0026853.1 mouse_genomes_project 2 163604760 163608775 + Cd40 protein_coding retained_intron MGP_AJ_T0101013.1 MGP_AJ_G0038979.1 mouse_genomes_project 2 18839835 18839958 - Gm24886 snoRNA snoRNA MGP_AJ_T0055295.1 MGP_AJ_G0025803.1 mouse_genomes_project 2 68857086 68860432 - MGP_AJ_P0055295 Dlx2 protein_coding protein_coding MGP_AJ_T0055296.1 MGP_AJ_G0025803.1 mouse_genomes_project 2 68858543 68859628 - Dlx2 protein_coding retained_intron MGP_AJ_T0052815.1 MGP_AJ_G0025364.1 mouse_genomes_project 2 17886566 18009815 - MGP_AJ_P0052815 Arhgap21 protein_coding protein_coding MGP_AJ_T0052816.1 MGP_AJ_G0025364.1 mouse_genomes_project 2 17886566 18008655 - MGP_AJ_P0052816 Arhgap21 protein_coding protein_coding MGP_AJ_T0052817.1 MGP_AJ_G0025364.1 mouse_genomes_project 2 17886587 18008654 - MGP_AJ_P0052817 Arhgap21 protein_coding protein_coding MGP_AJ_T0052818.1 MGP_AJ_G0025364.1 mouse_genomes_project 2 17887241 18009460 - MGP_AJ_P0052818 Arhgap21 protein_coding protein_coding MGP_AJ_T0052819.1 MGP_AJ_G0025364.1 mouse_genomes_project 2 17888599 17892092 - Arhgap21 protein_coding retained_intron MGP_AJ_T0052820.1 MGP_AJ_G0025364.1 mouse_genomes_project 2 17888690 17925732 - MGP_AJ_P0052820 Arhgap21 protein_coding nonsense_mediated_decay MGP_AJ_T0052821.1 MGP_AJ_G0025364.1 mouse_genomes_project 2 17888891 17898733 - Arhgap21 protein_coding retained_intron MGP_AJ_T0052822.1 MGP_AJ_G0025364.1 mouse_genomes_project 2 17889027 17893476 - Arhgap21 protein_coding retained_intron MGP_AJ_T0052823.1 MGP_AJ_G0025364.1 mouse_genomes_project 2 17891885 17894550 - Arhgap21 protein_coding processed_transcript MGP_AJ_T0052824.1 MGP_AJ_G0025364.1 mouse_genomes_project 2 17891886 17898726 - Arhgap21 protein_coding processed_transcript MGP_AJ_T0052825.1 MGP_AJ_G0025364.1 mouse_genomes_project 2 17897759 17910133 - MGP_AJ_P0052825 Arhgap21 protein_coding protein_coding MGP_AJ_T0052826.1 MGP_AJ_G0025364.1 mouse_genomes_project 2 17898273 17899944 - Arhgap21 protein_coding retained_intron MGP_AJ_T0052827.1 MGP_AJ_G0025364.1 mouse_genomes_project 2 17929179 17956232 - Arhgap21 protein_coding processed_transcript MGP_AJ_T0052828.1 MGP_AJ_G0025364.1 mouse_genomes_project 2 17932714 17984359 - MGP_AJ_P0052828 Arhgap21 protein_coding protein_coding MGP_AJ_T0052829.1 MGP_AJ_G0025364.1 mouse_genomes_project 2 17956337 18009559 - MGP_AJ_P0052829 Arhgap21 protein_coding protein_coding MGP_AJ_T0052830.1 MGP_AJ_G0025364.1 mouse_genomes_project 2 18008531 18009418 - Arhgap21 protein_coding processed_transcript MGP_AJ_T0052831.1 MGP_AJ_G0025364.1 mouse_genomes_project 2 18008556 18009766 - Arhgap21 protein_coding processed_transcript MGP_AJ_T0052832.1 MGP_AJ_G0025364.1 mouse_genomes_project 2 18008623 18009814 - Arhgap21 protein_coding processed_transcript MGP_AJ_T0058669.1 MGP_AJ_G0026716.1 mouse_genomes_project 2 154424611 154456055 + Cep250 protein_coding retained_intron MGP_AJ_T0058670.1 MGP_AJ_G0026716.1 mouse_genomes_project 2 154424711 154468488 + MGP_AJ_P0058670 Cep250 protein_coding protein_coding MGP_AJ_T0058671.1 MGP_AJ_G0026716.1 mouse_genomes_project 2 154424711 154468488 + MGP_AJ_P0058671 Cep250 protein_coding protein_coding MGP_AJ_T0058672.1 MGP_AJ_G0026716.1 mouse_genomes_project 2 154424711 154468488 + MGP_AJ_P0058672 Cep250 protein_coding protein_coding MGP_AJ_T0058673.1 MGP_AJ_G0026716.1 mouse_genomes_project 2 154424725 154443645 + MGP_AJ_P0058673 Cep250 protein_coding protein_coding MGP_AJ_T0058674.1 MGP_AJ_G0026716.1 mouse_genomes_project 2 154424747 154436403 + MGP_AJ_P0058674 Cep250 protein_coding protein_coding MGP_AJ_T0058676.1 MGP_AJ_G0026716.1 mouse_genomes_project 2 154445588 154468488 + Cep250 protein_coding retained_intron MGP_AJ_T0058677.1 MGP_AJ_G0026716.1 mouse_genomes_project 2 154448870 154450760 + Cep250 protein_coding retained_intron MGP_AJ_T0058678.1 MGP_AJ_G0026716.1 mouse_genomes_project 2 154455324 154459161 + MGP_AJ_P0058678 Cep250 protein_coding protein_coding MGP_AJ_T0058679.1 MGP_AJ_G0026716.1 mouse_genomes_project 2 154455356 154460154 + MGP_AJ_P0058679 Cep250 protein_coding nonsense_mediated_decay MGP_AJ_T0057526.1 MGP_AJ_G0026422.1 mouse_genomes_project 2 125349018 125353068 + MGP_AJ_P0057526 Adra2b protein_coding protein_coding MGP_AJ_T0057527.1 MGP_AJ_G0026422.1 mouse_genomes_project 2 125349096 125353068 + MGP_AJ_P0057527 Adra2b protein_coding protein_coding MGP_AJ_T0013877.1 MGP_AJ_G0011972.1 mouse_genomes_project 2 169140278 169140584 - processed_pseudogene processed_pseudogene MGP_AJ_T0055842.1 MGP_AJ_G0025981.1 mouse_genomes_project 2 85041221 85042145 + MGP_AJ_P0055842 Olfr153 protein_coding protein_coding MGP_AJ_T0059128.1 MGP_AJ_G0026803.1 mouse_genomes_project 2 162687609 162695101 - MGP_AJ_P0059128 Kcns1 protein_coding protein_coding MGP_AJ_T0055232.1 MGP_AJ_G0025793.1 mouse_genomes_project 2 68018372 68136252 - Tlk1 protein_coding processed_transcript MGP_AJ_T0055233.1 MGP_AJ_G0025793.1 mouse_genomes_project 2 68018372 68136583 - MGP_AJ_P0055233 Tlk1 protein_coding protein_coding MGP_AJ_T0055234.1 MGP_AJ_G0025793.1 mouse_genomes_project 2 68020106 68024190 - Tlk1 protein_coding processed_transcript MGP_AJ_T0055235.1 MGP_AJ_G0025793.1 mouse_genomes_project 2 68022277 68023870 - Tlk1 protein_coding processed_transcript MGP_AJ_T0055236.1 MGP_AJ_G0025793.1 mouse_genomes_project 2 68052079 68136178 - Tlk1 protein_coding processed_transcript MGP_AJ_T0055237.1 MGP_AJ_G0025793.1 mouse_genomes_project 2 68055313 68136166 - Tlk1 protein_coding processed_transcript MGP_AJ_T0055238.1 MGP_AJ_G0025793.1 mouse_genomes_project 2 68057064 68136083 - Tlk1 protein_coding processed_transcript MGP_AJ_T0013878.1 MGP_AJ_G0011973.1 mouse_genomes_project 2 170788535 170789150 + processed_pseudogene processed_pseudogene MGP_AJ_T0101063.1 MGP_AJ_G0039029.1 mouse_genomes_project 2 126785077 126785201 + Gm23172 snoRNA snoRNA MGP_AJ_T0056804.1 MGP_AJ_G0026274.1 mouse_genomes_project 2 116044587 116141467 - MGP_AJ_P0056804 Gpr176 protein_coding protein_coding MGP_AJ_T0058648.1 MGP_AJ_G0026713.1 mouse_genomes_project 2 154312249 154397074 - Uqcc1 protein_coding processed_transcript MGP_AJ_T0058649.1 MGP_AJ_G0026713.1 mouse_genomes_project 2 154312249 154397074 - MGP_AJ_P0058649 Uqcc1 protein_coding nonsense_mediated_decay MGP_AJ_T0058650.1 MGP_AJ_G0026713.1 mouse_genomes_project 2 154312251 154397057 - MGP_AJ_P0058650 Uqcc1 protein_coding protein_coding MGP_AJ_T0058651.1 MGP_AJ_G0026713.1 mouse_genomes_project 2 154312251 154397050 - MGP_AJ_P0058651 Uqcc1 protein_coding nonsense_mediated_decay MGP_AJ_T0058652.1 MGP_AJ_G0026713.1 mouse_genomes_project 2 154312276 154397324 - MGP_AJ_P0058652 Uqcc1 protein_coding protein_coding MGP_AJ_T0058653.1 MGP_AJ_G0026713.1 mouse_genomes_project 2 154313302 154397087 - MGP_AJ_P0058653 Uqcc1 protein_coding protein_coding MGP_AJ_T0058654.1 MGP_AJ_G0026713.1 mouse_genomes_project 2 154313539 154317224 - Uqcc1 protein_coding processed_transcript MGP_AJ_T0058655.1 MGP_AJ_G0026713.1 mouse_genomes_project 2 154313595 154397058 - MGP_AJ_P0058655 Uqcc1 protein_coding protein_coding MGP_AJ_T0058656.1 MGP_AJ_G0026713.1 mouse_genomes_project 2 154313614 154397324 - MGP_AJ_P0058656 Uqcc1 protein_coding protein_coding MGP_AJ_T0058657.1 MGP_AJ_G0026713.1 mouse_genomes_project 2 154313805 154397046 - MGP_AJ_P0058657 Uqcc1 protein_coding protein_coding MGP_AJ_T0058658.1 MGP_AJ_G0026713.1 mouse_genomes_project 2 154316345 154397277 - Uqcc1 protein_coding retained_intron MGP_AJ_T0058659.1 MGP_AJ_G0026713.1 mouse_genomes_project 2 154316809 154397057 - MGP_AJ_P0058659 Uqcc1 protein_coding nonsense_mediated_decay MGP_AJ_T0058660.1 MGP_AJ_G0026713.1 mouse_genomes_project 2 154323617 154397064 - Uqcc1 protein_coding retained_intron MGP_AJ_T0058661.1 MGP_AJ_G0026713.1 mouse_genomes_project 2 154336428 154397070 - Uqcc1 protein_coding processed_transcript MGP_AJ_T0058662.1 MGP_AJ_G0026713.1 mouse_genomes_project 2 154352913 154397074 - MGP_AJ_P0058662 Uqcc1 protein_coding protein_coding MGP_AJ_T0058663.1 MGP_AJ_G0026713.1 mouse_genomes_project 2 154352925 154376749 - Uqcc1 protein_coding retained_intron MGP_AJ_T0058664.1 MGP_AJ_G0026713.1 mouse_genomes_project 2 154352932 154397290 - Uqcc1 protein_coding processed_transcript MGP_AJ_T0058665.1 MGP_AJ_G0026713.1 mouse_genomes_project 2 154374110 154397060 - Uqcc1 protein_coding retained_intron MGP_AJ_T0058666.1 MGP_AJ_G0026713.1 mouse_genomes_project 2 154375505 154397064 - MGP_AJ_P0058666 Uqcc1 protein_coding protein_coding MGP_AJ_T0059110.1 MGP_AJ_G0026797.1 mouse_genomes_project 2 162379321 162384645 + MGP_AJ_P0059110 Kcnk15 protein_coding protein_coding MGP_AJ_T0059111.1 MGP_AJ_G0026797.1 mouse_genomes_project 2 162379403 162385449 + MGP_AJ_P0059111 Kcnk15 protein_coding protein_coding MGP_AJ_T0013788.1 MGP_AJ_G0011883.1 mouse_genomes_project 2 141207278 141208079 - processed_pseudogene processed_pseudogene MGP_AJ_T0010436.1 MGP_AJ_G0008558.1 mouse_genomes_project 2 91880569 91880634 + Mir129b miRNA miRNA MGP_AJ_T0007262.1 MGP_AJ_G0005952.1 mouse_genomes_project 2 88849194 88850400 + A330069E16Rik lincRNA lincRNA MGP_AJ_T0057430.1 MGP_AJ_G0026401.1 mouse_genomes_project 2 124108240 124121313 + MGP_AJ_P0057430 Dtwd1 protein_coding unknown_likely_coding MGP_AJ_T0056879.1 MGP_AJ_G0026292.1 mouse_genomes_project 2 116887167 116896110 + MGP_AJ_P0056879 Rad51 protein_coding protein_coding MGP_AJ_T0056880.1 MGP_AJ_G0026292.1 mouse_genomes_project 2 116887181 116910574 + MGP_AJ_P0056880 Rad51 protein_coding protein_coding MGP_AJ_T0056881.1 MGP_AJ_G0026292.1 mouse_genomes_project 2 116887188 116906887 + Rad51 protein_coding retained_intron MGP_AJ_T0056882.1 MGP_AJ_G0026292.1 mouse_genomes_project 2 116887191 116910322 + MGP_AJ_P0056882 Rad51 protein_coding nonsense_mediated_decay MGP_AJ_T0056883.1 MGP_AJ_G0026292.1 mouse_genomes_project 2 116893074 116894526 + Rad51 protein_coding retained_intron MGP_AJ_T0056884.1 MGP_AJ_G0026292.1 mouse_genomes_project 2 116896066 116921039 + MGP_AJ_P0056884 Rad51 protein_coding protein_coding MGP_AJ_T0056885.1 MGP_AJ_G0026292.1 mouse_genomes_project 2 116904797 116907747 + Rad51 protein_coding retained_intron MGP_AJ_T0056886.1 MGP_AJ_G0026292.1 mouse_genomes_project 2 116907453 116908500 + Rad51 protein_coding retained_intron MGP_AJ_T0055270.1 MGP_AJ_G0025798.1 mouse_genomes_project 2 68575731 68674425 - MGP_AJ_P0055270 Slc25a12 protein_coding protein_coding MGP_AJ_T0055271.1 MGP_AJ_G0025798.1 mouse_genomes_project 2 68578747 68674209 - MGP_AJ_P0055271 Slc25a12 protein_coding nonsense_mediated_decay MGP_AJ_T0055272.1 MGP_AJ_G0025798.1 mouse_genomes_project 2 68579134 68599512 - Slc25a12 protein_coding processed_transcript MGP_AJ_T0055273.1 MGP_AJ_G0025798.1 mouse_genomes_project 2 68583613 68586790 - Slc25a12 protein_coding retained_intron MGP_AJ_T0055274.1 MGP_AJ_G0025798.1 mouse_genomes_project 2 68617304 68633584 - Slc25a12 protein_coding processed_transcript MGP_AJ_T0055275.1 MGP_AJ_G0025798.1 mouse_genomes_project 2 68634480 68649217 - Slc25a12 protein_coding processed_transcript MGP_AJ_T0055276.1 MGP_AJ_G0025798.1 mouse_genomes_project 2 68649074 68653010 - Slc25a12 protein_coding processed_transcript MGP_AJ_T0059331.1 MGP_AJ_G0026863.1 mouse_genomes_project 2 164151538 164331070 + MGP_AJ_P0059331 Eya2 protein_coding protein_coding MGP_AJ_T0059332.1 MGP_AJ_G0026863.1 mouse_genomes_project 2 164216967 164331078 + MGP_AJ_P0059332 Eya2 protein_coding protein_coding MGP_AJ_T0059333.1 MGP_AJ_G0026863.1 mouse_genomes_project 2 164216987 164273760 + Eya2 protein_coding processed_transcript MGP_AJ_T0059334.1 MGP_AJ_G0026863.1 mouse_genomes_project 2 164271258 164324922 + Eya2 protein_coding processed_transcript MGP_AJ_T0059335.1 MGP_AJ_G0026863.1 mouse_genomes_project 2 164320467 164325781 + Eya2 protein_coding processed_transcript MGP_AJ_T0059336.1 MGP_AJ_G0026863.1 mouse_genomes_project 2 164328345 164330617 + Eya2 protein_coding processed_transcript MGP_AJ_T0057227.1 MGP_AJ_G0026350.1 mouse_genomes_project 2 119176686 119193922 - MGP_AJ_P0057227 Strc protein_coding protein_coding MGP_AJ_T0057228.1 MGP_AJ_G0026350.1 mouse_genomes_project 2 119181393 119188011 - MGP_AJ_P0057228 Strc protein_coding nonsense_mediated_decay MGP_AJ_T0057229.1 MGP_AJ_G0026350.1 mouse_genomes_project 2 119185870 119187995 - Strc protein_coding processed_transcript MGP_AJ_T0057230.1 MGP_AJ_G0026350.1 mouse_genomes_project 2 119185949 119187774 - Strc protein_coding retained_intron MGP_AJ_T0057231.1 MGP_AJ_G0026350.1 mouse_genomes_project 2 119189327 119199920 - Strc protein_coding retained_intron MGP_AJ_T0054774.1 MGP_AJ_G0025708.1 mouse_genomes_project 2 49404852 49453507 + MGP_AJ_P0054774 Rif1 protein_coding protein_coding MGP_AJ_T0054775.1 MGP_AJ_G0025708.1 mouse_genomes_project 2 49404857 49453509 + MGP_AJ_P0054775 Rif1 protein_coding protein_coding MGP_AJ_T0054776.1 MGP_AJ_G0025708.1 mouse_genomes_project 2 49404938 49457774 + MGP_AJ_P0054776 Rif1 protein_coding unknown_likely_coding MGP_AJ_T0054777.1 MGP_AJ_G0025708.1 mouse_genomes_project 2 49405087 49408222 + Rif1 protein_coding processed_transcript MGP_AJ_T0054778.1 MGP_AJ_G0025708.1 mouse_genomes_project 2 49421557 49438968 + Rif1 protein_coding processed_transcript MGP_AJ_T0054779.1 MGP_AJ_G0025708.1 mouse_genomes_project 2 49425134 49430380 + Rif1 protein_coding processed_transcript MGP_AJ_T0054780.1 MGP_AJ_G0025708.1 mouse_genomes_project 2 49442173 49453181 + Rif1 protein_coding processed_transcript MGP_AJ_T0054781.1 MGP_AJ_G0025708.1 mouse_genomes_project 2 49442650 49453234 + Rif1 protein_coding processed_transcript MGP_AJ_T0054782.1 MGP_AJ_G0025708.1 mouse_genomes_project 2 49443322 49453507 + Rif1 protein_coding processed_transcript MGP_AJ_T0013679.1 MGP_AJ_G0011774.1 mouse_genomes_project 2 97173015 97173643 + processed_pseudogene processed_pseudogene MGP_AJ_T0013787.1 MGP_AJ_G0011882.1 mouse_genomes_project 2 141186606 141187227 - processed_pseudogene processed_pseudogene MGP_AJ_T0054614.1 MGP_AJ_G0025687.1 mouse_genomes_project 2 36266622 36318363 - MGP_AJ_P0054614 Golga1 protein_coding protein_coding MGP_AJ_T0054615.1 MGP_AJ_G0025687.1 mouse_genomes_project 2 36266728 36318310 - MGP_AJ_P0054615 Golga1 protein_coding protein_coding MGP_AJ_T0054616.1 MGP_AJ_G0025687.1 mouse_genomes_project 2 36266970 36305833 - MGP_AJ_P0054616 Golga1 protein_coding nonsense_mediated_decay MGP_AJ_T0054617.1 MGP_AJ_G0025687.1 mouse_genomes_project 2 36267246 36268874 - Golga1 protein_coding processed_transcript MGP_AJ_T0054618.1 MGP_AJ_G0025687.1 mouse_genomes_project 2 36268120 36269034 - Golga1 protein_coding retained_intron MGP_AJ_T0054619.1 MGP_AJ_G0025687.1 mouse_genomes_project 2 36268120 36318310 - MGP_AJ_P0054619 Golga1 protein_coding nonsense_mediated_decay MGP_AJ_T0054620.1 MGP_AJ_G0025687.1 mouse_genomes_project 2 36268280 36270029 - MGP_AJ_P0054620 Golga1 protein_coding nonsense_mediated_decay MGP_AJ_T0054621.1 MGP_AJ_G0025687.1 mouse_genomes_project 2 36268621 36269709 - Golga1 protein_coding retained_intron MGP_AJ_T0054622.1 MGP_AJ_G0025687.1 mouse_genomes_project 2 36273179 36318310 - Golga1 protein_coding retained_intron MGP_AJ_T0054623.1 MGP_AJ_G0025687.1 mouse_genomes_project 2 36293320 36308941 - MGP_AJ_P0054623 Golga1 protein_coding protein_coding MGP_AJ_T0054624.1 MGP_AJ_G0025687.1 mouse_genomes_project 2 36299746 36318307 - Golga1 protein_coding retained_intron MGP_AJ_T0053556.1 MGP_AJ_G0025499.1 mouse_genomes_project 2 25526846 25529959 + MGP_AJ_P0053556 Mrps2 protein_coding protein_coding MGP_AJ_T0053557.1 MGP_AJ_G0025499.1 mouse_genomes_project 2 25526862 25529946 + Mrps2 protein_coding processed_transcript MGP_AJ_T0053558.1 MGP_AJ_G0025499.1 mouse_genomes_project 2 25526870 25529946 + Mrps2 protein_coding processed_transcript MGP_AJ_T0057528.1 MGP_AJ_G0026423.1 mouse_genomes_project 2 125412415 125423296 + MGP_AJ_P0057528 Gpat2 protein_coding protein_coding MGP_AJ_T0053423.1 MGP_AJ_G0025473.1 mouse_genomes_project 2 23860150 23883540 - MGP_AJ_P0053423 Abo protein_coding protein_coding MGP_AJ_T0053424.1 MGP_AJ_G0025473.1 mouse_genomes_project 2 23860150 23892014 - MGP_AJ_P0053424 Abo protein_coding protein_coding MGP_AJ_T0102499.1 MGP_AJ_G0040241.1 mouse_genomes_project 2 86127893 86128805 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0056600.1 MGP_AJ_G0026195.1 mouse_genomes_project 2 104370994 104552045 + MGP_AJ_P0056600 Mpped2 protein_coding protein_coding MGP_AJ_T0056601.1 MGP_AJ_G0026195.1 mouse_genomes_project 2 104372943 104424562 + MGP_AJ_P0056601 Mpped2 protein_coding protein_coding MGP_AJ_T0056602.1 MGP_AJ_G0026195.1 mouse_genomes_project 2 104373324 104550891 + MGP_AJ_P0056602 Mpped2 protein_coding protein_coding MGP_AJ_T0056603.1 MGP_AJ_G0026195.1 mouse_genomes_project 2 104373346 104465212 + Mpped2 protein_coding processed_transcript MGP_AJ_T0056604.1 MGP_AJ_G0026195.1 mouse_genomes_project 2 104373577 104550720 + MGP_AJ_P0056604 Mpped2 protein_coding protein_coding MGP_AJ_T0056605.1 MGP_AJ_G0026195.1 mouse_genomes_project 2 104409585 104465331 + Mpped2 protein_coding processed_transcript MGP_AJ_T0013838.1 MGP_AJ_G0011933.1 mouse_genomes_project 2 154803383 154803662 + processed_pseudogene processed_pseudogene MGP_AJ_T0004144.1 MGP_AJ_G0003663.1 mouse_genomes_project 2 156711450 156715194 + 1700060C20Rik antisense antisense MGP_AJ_T0017856.1 MGP_AJ_G0015442.1 mouse_genomes_project 2 126195393 126432313 - Gm14005 processed_transcript processed_transcript MGP_AJ_T0017857.1 MGP_AJ_G0015442.1 mouse_genomes_project 2 126301986 126432496 - Gm14005 processed_transcript processed_transcript MGP_AJ_T0017858.1 MGP_AJ_G0015442.1 mouse_genomes_project 2 126318425 126432522 - Gm14005 processed_transcript processed_transcript MGP_AJ_T0017859.1 MGP_AJ_G0015442.1 mouse_genomes_project 2 126318601 126432343 - Gm14005 processed_transcript processed_transcript MGP_AJ_T0017860.1 MGP_AJ_G0015442.1 mouse_genomes_project 2 126348452 126432413 - Gm14005 processed_transcript processed_transcript MGP_AJ_T0017861.1 MGP_AJ_G0015442.1 mouse_genomes_project 2 126374904 126432359 - Gm14005 processed_transcript processed_transcript MGP_AJ_T0017862.1 MGP_AJ_G0015442.1 mouse_genomes_project 2 126374905 126432066 - Gm14005 processed_transcript processed_transcript MGP_AJ_T0056289.1 MGP_AJ_G0026135.1 mouse_genomes_project 2 90844556 90973364 - MGP_AJ_P0056289 Tspan18 protein_coding protein_coding MGP_AJ_T0056290.1 MGP_AJ_G0026135.1 mouse_genomes_project 2 90846866 90870148 - MGP_AJ_P0056290 Tspan18 protein_coding protein_coding MGP_AJ_T0056291.1 MGP_AJ_G0026135.1 mouse_genomes_project 2 90950165 90973382 - Tspan18 protein_coding processed_transcript MGP_AJ_T0056292.1 MGP_AJ_G0026135.1 mouse_genomes_project 2 90950165 90951410 - Tspan18 protein_coding processed_transcript MGP_AJ_T0056052.1 MGP_AJ_G0026101.1 mouse_genomes_project 2 88669087 88677903 - MGP_AJ_P0056052 Slc39a13 protein_coding protein_coding MGP_AJ_T0056053.1 MGP_AJ_G0026101.1 mouse_genomes_project 2 88669087 88677715 - MGP_AJ_P0056053 Slc39a13 protein_coding protein_coding MGP_AJ_T0056054.1 MGP_AJ_G0026101.1 mouse_genomes_project 2 88670169 88677769 - MGP_AJ_P0056054 Slc39a13 protein_coding protein_coding MGP_AJ_T0056055.1 MGP_AJ_G0026101.1 mouse_genomes_project 2 88670417 88672742 - Slc39a13 protein_coding processed_transcript MGP_AJ_T0056056.1 MGP_AJ_G0026101.1 mouse_genomes_project 2 88670420 88671682 - Slc39a13 protein_coding processed_transcript MGP_AJ_T0056057.1 MGP_AJ_G0026101.1 mouse_genomes_project 2 88670700 88677784 - Slc39a13 protein_coding processed_transcript MGP_AJ_T0056058.1 MGP_AJ_G0026101.1 mouse_genomes_project 2 88671936 88673472 - Slc39a13 protein_coding processed_transcript MGP_AJ_T0056059.1 MGP_AJ_G0026101.1 mouse_genomes_project 2 88672876 88677725 - Slc39a13 protein_coding processed_transcript MGP_AJ_T0056060.1 MGP_AJ_G0026101.1 mouse_genomes_project 2 88673341 88677673 - MGP_AJ_P0056060 Slc39a13 protein_coding protein_coding MGP_AJ_T0056061.1 MGP_AJ_G0026101.1 mouse_genomes_project 2 88675916 88676357 - Slc39a13 protein_coding processed_transcript MGP_AJ_T0056062.1 MGP_AJ_G0026101.1 mouse_genomes_project 2 88676603 88677725 - Slc39a13 protein_coding processed_transcript MGP_AJ_T0056024.1 MGP_AJ_G0026097.1 mouse_genomes_project 2 88511161 88516989 + MGP_AJ_P0056024 Kbtbd4 protein_coding protein_coding MGP_AJ_T0056025.1 MGP_AJ_G0026097.1 mouse_genomes_project 2 88511164 88516989 + MGP_AJ_P0056025 Kbtbd4 protein_coding protein_coding MGP_AJ_T0056026.1 MGP_AJ_G0026097.1 mouse_genomes_project 2 88511190 88512043 + Kbtbd4 protein_coding processed_transcript MGP_AJ_T0056027.1 MGP_AJ_G0026097.1 mouse_genomes_project 2 88511500 88512479 + Kbtbd4 protein_coding processed_transcript MGP_AJ_T0056028.1 MGP_AJ_G0026097.1 mouse_genomes_project 2 88515591 88518054 + Kbtbd4 protein_coding processed_transcript MGP_AJ_T0056933.1 MGP_AJ_G0026307.1 mouse_genomes_project 2 117410043 117419537 - Oip5 protein_coding retained_intron MGP_AJ_T0056934.1 MGP_AJ_G0026307.1 mouse_genomes_project 2 117410486 117419537 - MGP_AJ_P0056934 Oip5 protein_coding protein_coding MGP_AJ_T0056445.1 MGP_AJ_G0026164.1 mouse_genomes_project 2 101041556 101081696 + MGP_AJ_P0056445 Elf5 protein_coding protein_coding MGP_AJ_T0056446.1 MGP_AJ_G0026164.1 mouse_genomes_project 2 101041581 101075982 + Elf5 protein_coding retained_intron MGP_AJ_T0056447.1 MGP_AJ_G0026164.1 mouse_genomes_project 2 101053932 101081699 + MGP_AJ_P0056447 Elf5 protein_coding protein_coding MGP_AJ_T0056448.1 MGP_AJ_G0026164.1 mouse_genomes_project 2 101053996 101080551 + MGP_AJ_P0056448 Elf5 protein_coding protein_coding MGP_AJ_T0056449.1 MGP_AJ_G0026164.1 mouse_genomes_project 2 101054697 101079741 + MGP_AJ_P0056449 Elf5 protein_coding protein_coding MGP_AJ_T0056450.1 MGP_AJ_G0026164.1 mouse_genomes_project 2 101077574 101079725 + Elf5 protein_coding processed_transcript MGP_AJ_T0056451.1 MGP_AJ_G0026164.1 mouse_genomes_project 2 101079447 101080533 + Elf5 protein_coding processed_transcript MGP_AJ_T0053266.1 MGP_AJ_G0025451.1 mouse_genomes_project 2 22874243 22929957 + MGP_AJ_P0053266 Kcnt1 protein_coding protein_coding MGP_AJ_T0053267.1 MGP_AJ_G0025451.1 mouse_genomes_project 2 22874304 22899424 + Kcnt1 protein_coding retained_intron MGP_AJ_T0053268.1 MGP_AJ_G0025451.1 mouse_genomes_project 2 22874363 22929029 + MGP_AJ_P0053268 Kcnt1 protein_coding protein_coding MGP_AJ_T0053269.1 MGP_AJ_G0025451.1 mouse_genomes_project 2 22874477 22929029 + MGP_AJ_P0053269 Kcnt1 protein_coding protein_coding MGP_AJ_T0053270.1 MGP_AJ_G0025451.1 mouse_genomes_project 2 22888265 22930475 + MGP_AJ_P0053270 Kcnt1 protein_coding protein_coding MGP_AJ_T0053271.1 MGP_AJ_G0025451.1 mouse_genomes_project 2 22888339 22905622 + Kcnt1 protein_coding retained_intron MGP_AJ_T0053272.1 MGP_AJ_G0025451.1 mouse_genomes_project 2 22888345 22929523 + MGP_AJ_P0053272 Kcnt1 protein_coding protein_coding MGP_AJ_T0053273.1 MGP_AJ_G0025451.1 mouse_genomes_project 2 22888352 22929992 + Kcnt1 protein_coding retained_intron MGP_AJ_T0053274.1 MGP_AJ_G0025451.1 mouse_genomes_project 2 22888355 22931185 + MGP_AJ_P0053274 Kcnt1 protein_coding protein_coding MGP_AJ_T0053275.1 MGP_AJ_G0025451.1 mouse_genomes_project 2 22888363 22929029 + MGP_AJ_P0053275 Kcnt1 protein_coding protein_coding MGP_AJ_T0053276.1 MGP_AJ_G0025451.1 mouse_genomes_project 2 22904790 22929504 + Kcnt1 protein_coding retained_intron MGP_AJ_T0053277.1 MGP_AJ_G0025451.1 mouse_genomes_project 2 22910209 22912710 + MGP_AJ_P0053277 Kcnt1 protein_coding nonsense_mediated_decay MGP_AJ_T0053278.1 MGP_AJ_G0025451.1 mouse_genomes_project 2 22912816 22922819 + MGP_AJ_P0053278 Kcnt1 protein_coding protein_coding MGP_AJ_T0053279.1 MGP_AJ_G0025451.1 mouse_genomes_project 2 22918828 22929835 + Kcnt1 protein_coding retained_intron MGP_AJ_T0053280.1 MGP_AJ_G0025451.1 mouse_genomes_project 2 22923803 22929152 + Kcnt1 protein_coding retained_intron MGP_AJ_T0055828.1 MGP_AJ_G0025975.1 mouse_genomes_project 2 84879280 84880261 + MGP_AJ_P0055828 Olfr1122 protein_coding protein_coding MGP_AJ_T0057342.1 MGP_AJ_G0026380.1 mouse_genomes_project 2 120544958 120548710 + MGP_AJ_P0057342 AA467197 protein_coding protein_coding MGP_AJ_T0057343.1 MGP_AJ_G0026380.1 mouse_genomes_project 2 120545823 120549174 + MGP_AJ_P0057343 AA467197 protein_coding protein_coding MGP_AJ_T0057344.1 MGP_AJ_G0026380.1 mouse_genomes_project 2 120545888 120548924 + AA467197 protein_coding processed_transcript MGP_AJ_T0057345.1 MGP_AJ_G0026380.1 mouse_genomes_project 2 120545888 120549066 + MGP_AJ_P0057345 AA467197 protein_coding protein_coding MGP_AJ_T0053743.1 MGP_AJ_G0025529.1 mouse_genomes_project 2 27131674 27145942 + MGP_AJ_P0053743 Set protein_coding protein_coding MGP_AJ_T0053744.1 MGP_AJ_G0025529.1 mouse_genomes_project 2 27136798 27145196 + MGP_AJ_P0053744 Set protein_coding protein_coding MGP_AJ_T0053745.1 MGP_AJ_G0025529.1 mouse_genomes_project 2 27137645 27146568 + Set protein_coding processed_transcript MGP_AJ_T0053746.1 MGP_AJ_G0025529.1 mouse_genomes_project 2 27141500 27149029 + MGP_AJ_P0053746 Set protein_coding protein_coding MGP_AJ_T0053747.1 MGP_AJ_G0025529.1 mouse_genomes_project 2 27141617 27146805 + MGP_AJ_P0053747 Set protein_coding unknown_likely_coding MGP_AJ_T0053748.1 MGP_AJ_G0025529.1 mouse_genomes_project 2 27142237 27145269 + Set protein_coding processed_transcript MGP_AJ_T0004177.1 MGP_AJ_G0003688.1 mouse_genomes_project 2 170733345 170737145 + Gm14271 antisense antisense MGP_AJ_T0013566.1 MGP_AJ_G0011661.1 mouse_genomes_project 2 57864555 57865697 + processed_pseudogene processed_pseudogene MGP_AJ_T0054317.1 MGP_AJ_G0025614.1 mouse_genomes_project 2 31356494 31558348 - MGP_AJ_P0054317 Pbx3 protein_coding protein_coding MGP_AJ_T0054318.1 MGP_AJ_G0025614.1 mouse_genomes_project 2 31357909 31474381 - Pbx3 protein_coding processed_transcript MGP_AJ_T0054319.1 MGP_AJ_G0025614.1 mouse_genomes_project 2 31357917 31558348 - MGP_AJ_P0054319 Pbx3 protein_coding nonsense_mediated_decay MGP_AJ_T0054320.1 MGP_AJ_G0025614.1 mouse_genomes_project 2 31357917 31558348 - MGP_AJ_P0054320 Pbx3 protein_coding nonsense_mediated_decay MGP_AJ_T0054321.1 MGP_AJ_G0025614.1 mouse_genomes_project 2 31361895 31557274 - MGP_AJ_P0054321 Pbx3 protein_coding nonsense_mediated_decay MGP_AJ_T0054322.1 MGP_AJ_G0025614.1 mouse_genomes_project 2 31399126 31559570 - MGP_AJ_P0054322 Pbx3 protein_coding protein_coding MGP_AJ_T0054323.1 MGP_AJ_G0025614.1 mouse_genomes_project 2 31410123 31557681 - MGP_AJ_P0054323 Pbx3 protein_coding protein_coding MGP_AJ_T0054324.1 MGP_AJ_G0025614.1 mouse_genomes_project 2 31410250 31557578 - MGP_AJ_P0054324 Pbx3 protein_coding protein_coding MGP_AJ_T0054325.1 MGP_AJ_G0025614.1 mouse_genomes_project 2 31554539 31558220 - Pbx3 protein_coding retained_intron MGP_AJ_T0056304.1 MGP_AJ_G0026137.1 mouse_genomes_project 2 91199815 91203608 + MGP_AJ_P0056304 Gm10803 protein_coding protein_coding MGP_AJ_T0059113.1 MGP_AJ_G0026799.1 mouse_genomes_project 2 162517478 162540918 + MGP_AJ_P0059113 Ywhab protein_coding protein_coding MGP_AJ_T0059114.1 MGP_AJ_G0026799.1 mouse_genomes_project 2 162518027 162537608 + MGP_AJ_P0059114 Ywhab protein_coding protein_coding MGP_AJ_T0058960.1 MGP_AJ_G0026762.1 mouse_genomes_project 2 157027898 157067550 + MGP_AJ_P0058960 Arhgap40 protein_coding protein_coding MGP_AJ_T0058961.1 MGP_AJ_G0026762.1 mouse_genomes_project 2 157027898 157067684 + MGP_AJ_P0058961 Arhgap40 protein_coding protein_coding MGP_AJ_T0058962.1 MGP_AJ_G0026762.1 mouse_genomes_project 2 157058712 157067684 + Arhgap40 protein_coding retained_intron MGP_AJ_T0058820.1 MGP_AJ_G0026734.1 mouse_genomes_project 2 155326857 155340945 + MGP_AJ_P0058820 Tgif2 protein_coding protein_coding MGP_AJ_T0058821.1 MGP_AJ_G0026734.1 mouse_genomes_project 2 155326950 155346658 + MGP_AJ_P0058821 Tgif2 protein_coding protein_coding MGP_AJ_T0058822.1 MGP_AJ_G0026734.1 mouse_genomes_project 2 155327871 155334522 + MGP_AJ_P0058822 Tgif2 protein_coding nonsense_mediated_decay MGP_AJ_T0058823.1 MGP_AJ_G0026734.1 mouse_genomes_project 2 155336803 155340041 + Tgif2 protein_coding processed_transcript MGP_AJ_T0058824.1 MGP_AJ_G0026734.1 mouse_genomes_project 2 155337683 155340395 + Tgif2 protein_coding processed_transcript MGP_AJ_T0057652.1 MGP_AJ_G0026456.1 mouse_genomes_project 2 127808219 127836748 + MGP_AJ_P0057652 Stk35 protein_coding protein_coding MGP_AJ_T0057653.1 MGP_AJ_G0026456.1 mouse_genomes_project 2 127808219 127839990 + MGP_AJ_P0057653 Stk35 protein_coding protein_coding MGP_AJ_T0055929.1 MGP_AJ_G0026057.1 mouse_genomes_project 2 87026928 87027876 - MGP_AJ_P0055929 Olfr1238 protein_coding protein_coding MGP_AJ_T0058080.1 MGP_AJ_G0026553.1 mouse_genomes_project 2 142644089 142655737 + MGP_AJ_P0058080 Sec23b protein_coding protein_coding MGP_AJ_T0058081.1 MGP_AJ_G0026553.1 mouse_genomes_project 2 142644116 142679095 + MGP_AJ_P0058081 Sec23b protein_coding protein_coding MGP_AJ_T0058082.1 MGP_AJ_G0026553.1 mouse_genomes_project 2 142644141 142647172 + MGP_AJ_P0058082 Sec23b protein_coding protein_coding MGP_AJ_T0058083.1 MGP_AJ_G0026553.1 mouse_genomes_project 2 142644172 142647281 + Sec23b protein_coding processed_transcript MGP_AJ_T0058084.1 MGP_AJ_G0026553.1 mouse_genomes_project 2 142644179 142654541 + MGP_AJ_P0058084 Sec23b protein_coding protein_coding MGP_AJ_T0058085.1 MGP_AJ_G0026553.1 mouse_genomes_project 2 142644194 142652384 + MGP_AJ_P0058085 Sec23b protein_coding protein_coding MGP_AJ_T0058086.1 MGP_AJ_G0026553.1 mouse_genomes_project 2 142652630 142679095 + Sec23b protein_coding processed_transcript MGP_AJ_T0058087.1 MGP_AJ_G0026553.1 mouse_genomes_project 2 142664943 142668903 + Sec23b protein_coding processed_transcript MGP_AJ_T0007247.1 MGP_AJ_G0005939.1 mouse_genomes_project 2 72533625 72564172 - A330043C09Rik lincRNA lincRNA MGP_AJ_T0013583.1 MGP_AJ_G0011678.1 mouse_genomes_project 2 65356726 65357265 + processed_pseudogene processed_pseudogene MGP_AJ_T0003989.1 MGP_AJ_G0003553.1 mouse_genomes_project 2 63134482 63142688 - Gm13619 antisense antisense MGP_AJ_T0013547.1 MGP_AJ_G0011642.1 mouse_genomes_project 2 51694024 51694575 - processed_pseudogene processed_pseudogene MGP_AJ_T0059696.1 MGP_AJ_G0026949.1 mouse_genomes_project 2 178872941 178873953 - Psma7 protein_coding retained_intron MGP_AJ_T0059697.1 MGP_AJ_G0026949.1 mouse_genomes_project 2 178872942 178878950 - Psma7 protein_coding retained_intron MGP_AJ_T0059698.1 MGP_AJ_G0026949.1 mouse_genomes_project 2 178872942 178878988 - MGP_AJ_P0059698 Psma7 protein_coding protein_coding MGP_AJ_T0059699.1 MGP_AJ_G0026949.1 mouse_genomes_project 2 178873387 178874057 - Psma7 protein_coding retained_intron MGP_AJ_T0059700.1 MGP_AJ_G0026949.1 mouse_genomes_project 2 178874204 178875359 - Psma7 protein_coding retained_intron MGP_AJ_T0059701.1 MGP_AJ_G0026949.1 mouse_genomes_project 2 178874606 178876683 - Psma7 protein_coding retained_intron MGP_AJ_T0059702.1 MGP_AJ_G0026949.1 mouse_genomes_project 2 178875833 178878940 - Psma7 protein_coding processed_transcript MGP_AJ_T0013562.1 MGP_AJ_G0011657.1 mouse_genomes_project 2 56646381 56646811 + processed_pseudogene processed_pseudogene MGP_AJ_T0058344.1 MGP_AJ_G0026635.1 mouse_genomes_project 2 150864813 150869812 - MGP_AJ_P0058344 Defb19 protein_coding protein_coding MGP_AJ_T0010373.1 MGP_AJ_G0008495.1 mouse_genomes_project 2 14595493 14595606 + Mir6419 miRNA miRNA MGP_AJ_T0056688.1 MGP_AJ_G0026236.1 mouse_genomes_project 2 109683859 109689466 - MGP_AJ_P0056688 Olfr1306 protein_coding protein_coding MGP_AJ_T0055541.1 MGP_AJ_G0025852.1 mouse_genomes_project 2 76308511 76311774 + MGP_AJ_P0055541 Ube2e3 protein_coding protein_coding MGP_AJ_T0055542.1 MGP_AJ_G0025852.1 mouse_genomes_project 2 76308587 76357161 + MGP_AJ_P0055542 Ube2e3 protein_coding protein_coding MGP_AJ_T0055543.1 MGP_AJ_G0025852.1 mouse_genomes_project 2 76310220 76364717 + MGP_AJ_P0055543 Ube2e3 protein_coding protein_coding MGP_AJ_T0055544.1 MGP_AJ_G0025852.1 mouse_genomes_project 2 76310413 76357973 + Ube2e3 protein_coding retained_intron MGP_AJ_T0055545.1 MGP_AJ_G0025852.1 mouse_genomes_project 2 76310507 76313926 + Ube2e3 protein_coding retained_intron MGP_AJ_T0055546.1 MGP_AJ_G0025852.1 mouse_genomes_project 2 76310851 76363721 + MGP_AJ_P0055546 Ube2e3 protein_coding protein_coding MGP_AJ_T0055547.1 MGP_AJ_G0025852.1 mouse_genomes_project 2 76361820 76363476 + Ube2e3 protein_coding retained_intron MGP_AJ_T0052461.1 MGP_AJ_G0025307.1 mouse_genomes_project 2 3179839 3201742 - MGP_AJ_P0052461 Echdc3 protein_coding protein_coding MGP_AJ_T0052462.1 MGP_AJ_G0025307.1 mouse_genomes_project 2 3180883 3187583 - Echdc3 protein_coding processed_transcript MGP_AJ_T0052463.1 MGP_AJ_G0025307.1 mouse_genomes_project 2 3194716 3201688 - Echdc3 protein_coding retained_intron MGP_AJ_T0054857.1 MGP_AJ_G0025725.1 mouse_genomes_project 2 55703794 55831226 - Acvr1 protein_coding processed_transcript MGP_AJ_T0054858.1 MGP_AJ_G0025725.1 mouse_genomes_project 2 55760874 55831226 - MGP_AJ_P0054858 Acvr1 protein_coding protein_coding MGP_AJ_T0054859.1 MGP_AJ_G0025725.1 mouse_genomes_project 2 55760881 55882690 - MGP_AJ_P0054859 Acvr1 protein_coding protein_coding MGP_AJ_T0054860.1 MGP_AJ_G0025725.1 mouse_genomes_project 2 55760881 55882688 - MGP_AJ_P0054860 Acvr1 protein_coding protein_coding MGP_AJ_T0054861.1 MGP_AJ_G0025725.1 mouse_genomes_project 2 55761587 55883019 - MGP_AJ_P0054861 Acvr1 protein_coding protein_coding MGP_AJ_T0054863.1 MGP_AJ_G0025725.1 mouse_genomes_project 2 55792457 55854292 - MGP_AJ_P0054863 Acvr1 protein_coding protein_coding MGP_AJ_T0055548.1 MGP_AJ_G0025853.1 mouse_genomes_project 2 76708334 76710761 + Itga4 protein_coding processed_transcript MGP_AJ_T0055549.1 MGP_AJ_G0025853.1 mouse_genomes_project 2 76708408 76786572 + MGP_AJ_P0055549 Itga4 protein_coding protein_coding MGP_AJ_T0055550.1 MGP_AJ_G0025853.1 mouse_genomes_project 2 76708480 76726890 + Itga4 protein_coding processed_transcript MGP_AJ_T0055551.1 MGP_AJ_G0025853.1 mouse_genomes_project 2 76708629 76746565 + Itga4 protein_coding processed_transcript MGP_AJ_T0055552.1 MGP_AJ_G0025853.1 mouse_genomes_project 2 76708855 76746269 + Itga4 protein_coding processed_transcript MGP_AJ_T0098938.1 MGP_AJ_G0036916.1 mouse_genomes_project 2 307185 310056 - Gm37525 sense_intronic sense_intronic MGP_AJ_T0017786.1 MGP_AJ_G0015407.1 mouse_genomes_project 2 75320194 75321909 - Gm13727 processed_transcript processed_transcript MGP_AJ_T0003898.1 MGP_AJ_G0003483.1 mouse_genomes_project 2 6921479 6930213 + Gm13262 antisense antisense MGP_AJ_T0055697.1 MGP_AJ_G0025885.1 mouse_genomes_project 2 82192576 82203920 + MGP_AJ_P0055697 Ube2l6 protein_coding protein_coding MGP_AJ_T0055698.1 MGP_AJ_G0025885.1 mouse_genomes_project 2 82192582 82200264 + MGP_AJ_P0055698 Ube2l6 protein_coding protein_coding MGP_AJ_T0055699.1 MGP_AJ_G0025885.1 mouse_genomes_project 2 82196572 82204077 + Ube2l6 protein_coding processed_transcript MGP_AJ_T0055700.1 MGP_AJ_G0025885.1 mouse_genomes_project 2 82200101 82203111 + Ube2l6 protein_coding retained_intron MGP_AJ_T0013554.1 MGP_AJ_G0011649.1 mouse_genomes_project 2 54594928 54598051 - processed_pseudogene processed_pseudogene MGP_AJ_T0101018.1 MGP_AJ_G0038984.1 mouse_genomes_project 2 23938792 23938866 + Gm23969 snoRNA snoRNA MGP_AJ_T0004073.1 MGP_AJ_G0003609.1 mouse_genomes_project 2 120640894 120645989 - Bloc1s6os antisense antisense MGP_AJ_T0059474.1 MGP_AJ_G0026888.1 mouse_genomes_project 2 166710206 166730406 + MGP_AJ_P0059474 Pard6b protein_coding protein_coding MGP_AJ_T0058338.1 MGP_AJ_G0026629.1 mouse_genomes_project 2 150771763 150777192 - MGP_AJ_P0058338 Defb22 protein_coding protein_coding MGP_AJ_T0056757.1 MGP_AJ_G0026265.1 mouse_genomes_project 2 112267758 112402216 - MGP_AJ_P0056757 Dph6 protein_coding protein_coding MGP_AJ_T0056758.1 MGP_AJ_G0026265.1 mouse_genomes_project 2 112269217 112305165 - Dph6 protein_coding processed_transcript MGP_AJ_T0056759.1 MGP_AJ_G0026265.1 mouse_genomes_project 2 112269311 112402182 - MGP_AJ_P0056759 Dph6 protein_coding protein_coding MGP_AJ_T0056760.1 MGP_AJ_G0026265.1 mouse_genomes_project 2 112272299 112402293 - Dph6 protein_coding retained_intron MGP_AJ_T0056761.1 MGP_AJ_G0026265.1 mouse_genomes_project 2 112389326 112402234 - Dph6 protein_coding retained_intron MGP_AJ_T0057609.1 MGP_AJ_G0026446.1 mouse_genomes_project 2 127071766 127102581 + MGP_AJ_P0057609 Ttl protein_coding protein_coding MGP_AJ_T0057610.1 MGP_AJ_G0026446.1 mouse_genomes_project 2 127071809 127073930 + Ttl protein_coding processed_transcript MGP_AJ_T0057611.1 MGP_AJ_G0026446.1 mouse_genomes_project 2 127081874 127096079 + MGP_AJ_P0057611 Ttl protein_coding protein_coding MGP_AJ_T0058942.1 MGP_AJ_G0026759.1 mouse_genomes_project 2 156890612 156901125 + MGP_AJ_P0058942 Snhg11 protein_coding protein_coding MGP_AJ_T0058943.1 MGP_AJ_G0026759.1 mouse_genomes_project 2 156890635 156892181 + Snhg11 protein_coding retained_intron MGP_AJ_T0058944.1 MGP_AJ_G0026759.1 mouse_genomes_project 2 156890672 156896564 + MGP_AJ_P0058944 Snhg11 protein_coding nonsense_mediated_decay MGP_AJ_T0058945.1 MGP_AJ_G0026759.1 mouse_genomes_project 2 156890689 156894037 + Snhg11 protein_coding retained_intron MGP_AJ_T0058946.1 MGP_AJ_G0026759.1 mouse_genomes_project 2 156890699 156896037 + MGP_AJ_P0058946 Snhg11 protein_coding nonsense_mediated_decay MGP_AJ_T0007415.1 MGP_AJ_G0006077.1 mouse_genomes_project 2 167670749 167672110 + Gm9873 lincRNA lincRNA MGP_AJ_T0007416.1 MGP_AJ_G0006077.1 mouse_genomes_project 2 167670994 167672091 + Gm9873 lincRNA lincRNA MGP_AJ_T0059183.1 MGP_AJ_G0026825.1 mouse_genomes_project 2 163111763 163118141 - MGP_AJ_P0059183 Wfdc6a protein_coding protein_coding MGP_AJ_T0013824.1 MGP_AJ_G0011919.1 mouse_genomes_project 2 150753540 150754023 + processed_pseudogene processed_pseudogene MGP_AJ_T0052700.1 MGP_AJ_G0025344.1 mouse_genomes_project 2 12128511 12161901 + MGP_AJ_P0052700 Arl5b protein_coding protein_coding MGP_AJ_T0052702.1 MGP_AJ_G0025344.1 mouse_genomes_project 2 12134356 12161905 + MGP_AJ_P0052702 Arl5b protein_coding protein_coding MGP_AJ_T0052703.1 MGP_AJ_G0025344.1 mouse_genomes_project 2 12134403 12155982 + MGP_AJ_P0052703 Arl5b protein_coding nonsense_mediated_decay MGP_AJ_T0052704.1 MGP_AJ_G0025344.1 mouse_genomes_project 2 12134463 12157020 + MGP_AJ_P0052704 Arl5b protein_coding protein_coding MGP_AJ_T0052705.1 MGP_AJ_G0025344.1 mouse_genomes_project 2 12147525 12155992 + MGP_AJ_P0052705 Arl5b protein_coding nonsense_mediated_decay MGP_AJ_T0052706.1 MGP_AJ_G0025344.1 mouse_genomes_project 2 12149348 12152558 + Arl5b protein_coding retained_intron MGP_AJ_T0052707.1 MGP_AJ_G0025344.1 mouse_genomes_project 2 12154385 12161901 + MGP_AJ_P0052707 Arl5b protein_coding protein_coding MGP_AJ_T0052557.1 MGP_AJ_G0025321.1 mouse_genomes_project 2 8619592 8636970 - MGP_AJ_P0052557 Rbm17 protein_coding protein_coding MGP_AJ_T0052558.1 MGP_AJ_G0025321.1 mouse_genomes_project 2 8619594 8620146 - Rbm17 protein_coding retained_intron MGP_AJ_T0052559.1 MGP_AJ_G0025321.1 mouse_genomes_project 2 8619596 8621324 - Rbm17 protein_coding retained_intron MGP_AJ_T0052560.1 MGP_AJ_G0025321.1 mouse_genomes_project 2 8621546 8623137 - Rbm17 protein_coding retained_intron MGP_AJ_T0052561.1 MGP_AJ_G0025321.1 mouse_genomes_project 2 8623070 8625014 - Rbm17 protein_coding retained_intron MGP_AJ_T0052562.1 MGP_AJ_G0025321.1 mouse_genomes_project 2 8630389 8637856 - MGP_AJ_P0052562 Rbm17 protein_coding protein_coding MGP_AJ_T0017883.1 MGP_AJ_G0015456.1 mouse_genomes_project 2 151652569 151657227 - 2500004C02Rik processed_transcript processed_transcript MGP_AJ_T0017884.1 MGP_AJ_G0015456.1 mouse_genomes_project 2 151653924 151654641 - 2500004C02Rik processed_transcript processed_transcript MGP_AJ_T0017885.1 MGP_AJ_G0015456.1 mouse_genomes_project 2 151654054 151657490 - 2500004C02Rik processed_transcript processed_transcript MGP_AJ_T0052947.1 MGP_AJ_G0025389.1 mouse_genomes_project 2 21743365 21844274 - MGP_AJ_P0052947 Ehmt1 protein_coding protein_coding MGP_AJ_T0052948.1 MGP_AJ_G0025389.1 mouse_genomes_project 2 21743711 21874449 - MGP_AJ_P0052948 Ehmt1 protein_coding protein_coding MGP_AJ_T0052949.1 MGP_AJ_G0025389.1 mouse_genomes_project 2 21743711 21874449 - MGP_AJ_P0052949 Ehmt1 protein_coding protein_coding MGP_AJ_T0052950.1 MGP_AJ_G0025389.1 mouse_genomes_project 2 21743711 21758874 - MGP_AJ_P0052950 Ehmt1 protein_coding nonsense_mediated_decay MGP_AJ_T0052951.1 MGP_AJ_G0025389.1 mouse_genomes_project 2 21744519 21874491 - MGP_AJ_P0052951 Ehmt1 protein_coding protein_coding MGP_AJ_T0052952.1 MGP_AJ_G0025389.1 mouse_genomes_project 2 21757751 21778184 - Ehmt1 protein_coding retained_intron MGP_AJ_T0052953.1 MGP_AJ_G0025389.1 mouse_genomes_project 2 21758788 21792376 - MGP_AJ_P0052953 Ehmt1 protein_coding nonsense_mediated_decay MGP_AJ_T0052954.1 MGP_AJ_G0025389.1 mouse_genomes_project 2 21758846 21759801 - Ehmt1 protein_coding processed_transcript MGP_AJ_T0052955.1 MGP_AJ_G0025389.1 mouse_genomes_project 2 21776113 21874465 - MGP_AJ_P0052955 Ehmt1 protein_coding nonsense_mediated_decay MGP_AJ_T0052956.1 MGP_AJ_G0025389.1 mouse_genomes_project 2 21777764 21805605 - MGP_AJ_P0052956 Ehmt1 protein_coding nonsense_mediated_decay MGP_AJ_T0052957.1 MGP_AJ_G0025389.1 mouse_genomes_project 2 21787887 21874454 - Ehmt1 protein_coding retained_intron MGP_AJ_T0052958.1 MGP_AJ_G0025389.1 mouse_genomes_project 2 21800808 21830176 - MGP_AJ_P0052958 Ehmt1 protein_coding protein_coding MGP_AJ_T0052959.1 MGP_AJ_G0025389.1 mouse_genomes_project 2 21815858 21837043 - MGP_AJ_P0052959 Ehmt1 protein_coding protein_coding MGP_AJ_T0052960.1 MGP_AJ_G0025389.1 mouse_genomes_project 2 21815927 21874482 - MGP_AJ_P0052960 Ehmt1 protein_coding protein_coding MGP_AJ_T0052961.1 MGP_AJ_G0025389.1 mouse_genomes_project 2 21816524 21874473 - MGP_AJ_P0052961 Ehmt1 protein_coding protein_coding MGP_AJ_T0054153.1 MGP_AJ_G0025586.1 mouse_genomes_project 2 29682565 29717091 + Fam102a protein_coding retained_intron MGP_AJ_T0054154.1 MGP_AJ_G0025586.1 mouse_genomes_project 2 29682566 29683424 + MGP_AJ_P0054154 Fam102a protein_coding protein_coding MGP_AJ_T0054155.1 MGP_AJ_G0025586.1 mouse_genomes_project 2 29682592 29717097 + MGP_AJ_P0054155 Fam102a protein_coding protein_coding MGP_AJ_T0054156.1 MGP_AJ_G0025586.1 mouse_genomes_project 2 29682966 29705551 + MGP_AJ_P0054156 Fam102a protein_coding protein_coding MGP_AJ_T0054157.1 MGP_AJ_G0025586.1 mouse_genomes_project 2 29687423 29707589 + Fam102a protein_coding processed_transcript MGP_AJ_T0055754.1 MGP_AJ_G0025904.1 mouse_genomes_project 2 83034117 83039255 - MGP_AJ_P0055754 protein_coding protein_coding MGP_AJ_T0004166.1 MGP_AJ_G0003677.1 mouse_genomes_project 2 163705082 163709639 + Gm14397 antisense antisense MGP_AJ_T0013687.1 MGP_AJ_G0011782.1 mouse_genomes_project 2 99938883 99939177 - processed_pseudogene processed_pseudogene MGP_AJ_T0056676.1 MGP_AJ_G0026224.1 mouse_genomes_project 2 109208242 109209181 + MGP_AJ_P0056676 Olfr1288 protein_coding protein_coding MGP_AJ_T0001030.1 MGP_AJ_G0000961.1 mouse_genomes_project 2 8564230 8566333 - TEC TEC MGP_AJ_T0055774.1 MGP_AJ_G0025923.1 mouse_genomes_project 2 83435044 83436384 + MGP_AJ_P0055774 protein_coding protein_coding MGP_AJ_T0010477.1 MGP_AJ_G0008599.1 mouse_genomes_project 2 162878066 162878137 - Mir7678 miRNA miRNA MGP_AJ_T0057922.1 MGP_AJ_G0026516.1 mouse_genomes_project 2 132549225 132599617 - MGP_AJ_P0057922 Hao1 protein_coding protein_coding MGP_AJ_T0057923.1 MGP_AJ_G0026516.1 mouse_genomes_project 2 132575265 132599556 - Hao1 protein_coding processed_transcript MGP_AJ_T0056563.1 MGP_AJ_G0026190.1 mouse_genomes_project 2 103061701 103074898 - MGP_AJ_P0056563 Rcn1 protein_coding protein_coding MGP_AJ_T0056564.1 MGP_AJ_G0026190.1 mouse_genomes_project 2 103062339 103070932 - Rcn1 protein_coding retained_intron MGP_AJ_T0013538.1 MGP_AJ_G0011633.1 mouse_genomes_project 2 49146979 49147644 - processed_pseudogene processed_pseudogene MGP_AJ_T0013825.1 MGP_AJ_G0011920.1 mouse_genomes_project 2 150899261 150899478 + processed_pseudogene processed_pseudogene MGP_AJ_T0007290.1 MGP_AJ_G0005973.1 mouse_genomes_project 2 103153275 103154132 + 4930527A07Rik lincRNA lincRNA MGP_AJ_T0013612.1 MGP_AJ_G0011707.1 mouse_genomes_project 2 76039258 76040512 + processed_pseudogene processed_pseudogene MGP_AJ_T0013636.1 MGP_AJ_G0011731.1 mouse_genomes_project 2 82645041 82645262 - processed_pseudogene processed_pseudogene MGP_AJ_T0101014.1 MGP_AJ_G0038980.1 mouse_genomes_project 2 19795482 19795602 + Gm25544 snoRNA snoRNA MGP_AJ_T0004094.1 MGP_AJ_G0003625.1 mouse_genomes_project 2 130539616 130561922 + 1700026D11Rik antisense antisense MGP_AJ_T0004095.1 MGP_AJ_G0003625.1 mouse_genomes_project 2 130539698 130561963 + 1700026D11Rik antisense antisense MGP_AJ_T0004096.1 MGP_AJ_G0003625.1 mouse_genomes_project 2 130539698 130563523 + 1700026D11Rik antisense antisense MGP_AJ_T0004097.1 MGP_AJ_G0003625.1 mouse_genomes_project 2 130539710 130573678 + 1700026D11Rik antisense antisense MGP_AJ_T0004098.1 MGP_AJ_G0003625.1 mouse_genomes_project 2 130539726 130573479 + 1700026D11Rik antisense antisense MGP_AJ_T0004099.1 MGP_AJ_G0003625.1 mouse_genomes_project 2 130539726 130561923 + 1700026D11Rik antisense antisense MGP_AJ_T0053797.1 MGP_AJ_G0025538.1 mouse_genomes_project 2 27320097 27366558 + MGP_AJ_P0053797 protein_coding nonsense_mediated_decay MGP_AJ_T0057856.1 MGP_AJ_G0026501.1 mouse_genomes_project 2 130024019 130066831 - MGP_AJ_P0057856 Rassf2 protein_coding protein_coding MGP_AJ_T0057857.1 MGP_AJ_G0026501.1 mouse_genomes_project 2 130027456 130067032 - MGP_AJ_P0057857 Rassf2 protein_coding protein_coding MGP_AJ_T0057858.1 MGP_AJ_G0026501.1 mouse_genomes_project 2 130037791 130058003 - Rassf2 protein_coding retained_intron MGP_AJ_T0057859.1 MGP_AJ_G0026501.1 mouse_genomes_project 2 130039783 130067088 - MGP_AJ_P0057859 Rassf2 protein_coding protein_coding MGP_AJ_T0057860.1 MGP_AJ_G0026501.1 mouse_genomes_project 2 130046561 130065996 - MGP_AJ_P0057860 Rassf2 protein_coding protein_coding MGP_AJ_T0004068.1 MGP_AJ_G0003604.1 mouse_genomes_project 2 116603205 116607415 - Gm14091 antisense antisense MGP_AJ_T0102474.1 MGP_AJ_G0040216.1 mouse_genomes_project 2 83021871 83022816 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0004150.1 MGP_AJ_G0003669.1 mouse_genomes_project 2 162020638 162021687 + 2310001K24Rik antisense antisense MGP_AJ_T0004151.1 MGP_AJ_G0003669.1 mouse_genomes_project 2 162021226 162021685 + 2310001K24Rik antisense antisense MGP_AJ_T0052792.1 MGP_AJ_G0025361.1 mouse_genomes_project 2 16496135 16586582 - MGP_AJ_P0052792 4921504E06Rik protein_coding protein_coding MGP_AJ_T0052793.1 MGP_AJ_G0025361.1 mouse_genomes_project 2 16526823 16586582 - 4921504E06Rik protein_coding retained_intron MGP_AJ_T0007226.1 MGP_AJ_G0005923.1 mouse_genomes_project 2 69070002 69077982 + Gm13647 lincRNA lincRNA MGP_AJ_T0057457.1 MGP_AJ_G0026407.1 mouse_genomes_project 2 124674053 124753759 - MGP_AJ_P0057457 Usp50 protein_coding nonsense_mediated_decay MGP_AJ_T0057459.1 MGP_AJ_G0026407.1 mouse_genomes_project 2 124730592 124740189 - Usp50 protein_coding processed_transcript MGP_AJ_T0057460.1 MGP_AJ_G0026407.1 mouse_genomes_project 2 124730963 124753765 - MGP_AJ_P0057460 Usp50 protein_coding protein_coding MGP_AJ_T0057461.1 MGP_AJ_G0026407.1 mouse_genomes_project 2 124746057 124753758 - MGP_AJ_P0057461 Usp50 protein_coding protein_coding MGP_AJ_T0057462.1 MGP_AJ_G0026407.1 mouse_genomes_project 2 124747979 124753779 - Usp50 protein_coding retained_intron MGP_AJ_T0010343.1 MGP_AJ_G0008465.1 mouse_genomes_project 2 7495290 7495389 + Mir297a-2 miRNA miRNA MGP_AJ_T0052399.1 MGP_AJ_G0025295.1 mouse_genomes_project 2 1956916 1966473 + MGP_AJ_P0052399 Ucma protein_coding protein_coding MGP_AJ_T0052400.1 MGP_AJ_G0025295.1 mouse_genomes_project 2 1956919 1962045 + Ucma protein_coding processed_transcript MGP_AJ_T0052401.1 MGP_AJ_G0025295.1 mouse_genomes_project 2 1956945 1966465 + MGP_AJ_P0052401 Ucma protein_coding protein_coding MGP_AJ_T0052402.1 MGP_AJ_G0025295.1 mouse_genomes_project 2 1956975 1966470 + MGP_AJ_P0052402 Ucma protein_coding protein_coding MGP_AJ_T0052403.1 MGP_AJ_G0025295.1 mouse_genomes_project 2 1956978 1966370 + MGP_AJ_P0052403 Ucma protein_coding protein_coding MGP_AJ_T0013614.1 MGP_AJ_G0011709.1 mouse_genomes_project 2 76285355 76285523 - processed_pseudogene processed_pseudogene MGP_AJ_T0054804.1 MGP_AJ_G0025712.1 mouse_genomes_project 2 50032394 50079395 - MGP_AJ_P0054804 Stam2 protein_coding protein_coding MGP_AJ_T0054805.1 MGP_AJ_G0025712.1 mouse_genomes_project 2 50038364 50079476 - MGP_AJ_P0054805 Stam2 protein_coding protein_coding MGP_AJ_T0054806.1 MGP_AJ_G0025712.1 mouse_genomes_project 2 50048261 50079375 - Stam2 protein_coding retained_intron MGP_AJ_T0054807.1 MGP_AJ_G0025712.1 mouse_genomes_project 2 50048543 50079385 - MGP_AJ_P0054807 Stam2 protein_coding nonsense_mediated_decay MGP_AJ_T0054808.1 MGP_AJ_G0025712.1 mouse_genomes_project 2 50056970 50079351 - MGP_AJ_P0054808 Stam2 protein_coding protein_coding MGP_AJ_T0057264.1 MGP_AJ_G0026359.1 mouse_genomes_project 2 119337491 119388553 + MGP_AJ_P0057264 Wdr76 protein_coding protein_coding MGP_AJ_T0057265.1 MGP_AJ_G0026359.1 mouse_genomes_project 2 119337551 119390006 + MGP_AJ_P0057265 Wdr76 protein_coding protein_coding MGP_AJ_T0057266.1 MGP_AJ_G0026359.1 mouse_genomes_project 2 119350311 119388158 + MGP_AJ_P0057266 Wdr76 protein_coding protein_coding MGP_AJ_T0054216.1 MGP_AJ_G0025597.1 mouse_genomes_project 2 29887644 29889903 - 6330409D20Rik protein_coding processed_transcript MGP_AJ_T0054217.1 MGP_AJ_G0025597.1 mouse_genomes_project 2 29887644 29897110 - MGP_AJ_P0054217 6330409D20Rik protein_coding protein_coding MGP_AJ_T0013651.1 MGP_AJ_G0011746.1 mouse_genomes_project 2 85055938 85056231 - processed_pseudogene processed_pseudogene MGP_AJ_T0054514.1 MGP_AJ_G0025659.1 mouse_genomes_project 2 34135804 34136752 + MGP_AJ_P0054514 Olfr356 protein_coding protein_coding MGP_AJ_T0058408.1 MGP_AJ_G0026653.1 mouse_genomes_project 2 151410237 151453163 + MGP_AJ_P0058408 Hck protein_coding protein_coding MGP_AJ_T0058409.1 MGP_AJ_G0026653.1 mouse_genomes_project 2 151410237 151453165 + MGP_AJ_P0058409 Hck protein_coding protein_coding MGP_AJ_T0102483.1 MGP_AJ_G0040225.1 mouse_genomes_project 2 83893789 83894676 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0054874.1 MGP_AJ_G0025730.1 mouse_genomes_project 2 56407519 56603435 + MGP_AJ_P0054874 Pkp4 protein_coding protein_coding MGP_AJ_T0054875.1 MGP_AJ_G0025730.1 mouse_genomes_project 2 56407519 56603436 + MGP_AJ_P0054875 Pkp4 protein_coding protein_coding MGP_AJ_T0054876.1 MGP_AJ_G0025730.1 mouse_genomes_project 2 56407618 56603438 + MGP_AJ_P0054876 Pkp4 protein_coding unknown_likely_coding MGP_AJ_T0054877.1 MGP_AJ_G0025730.1 mouse_genomes_project 2 56407649 56603055 + MGP_AJ_P0054877 Pkp4 protein_coding nonsense_mediated_decay MGP_AJ_T0054878.1 MGP_AJ_G0025730.1 mouse_genomes_project 2 56407649 56587072 + MGP_AJ_P0054878 Pkp4 protein_coding protein_coding MGP_AJ_T0054879.1 MGP_AJ_G0025730.1 mouse_genomes_project 2 56407677 56603439 + MGP_AJ_P0054879 Pkp4 protein_coding protein_coding MGP_AJ_T0054880.1 MGP_AJ_G0025730.1 mouse_genomes_project 2 56407689 56553434 + Pkp4 protein_coding processed_transcript MGP_AJ_T0054881.1 MGP_AJ_G0025730.1 mouse_genomes_project 2 56407712 56587075 + MGP_AJ_P0054881 Pkp4 protein_coding nonsense_mediated_decay MGP_AJ_T0054882.1 MGP_AJ_G0025730.1 mouse_genomes_project 2 56408596 56461858 + Pkp4 protein_coding processed_transcript MGP_AJ_T0054883.1 MGP_AJ_G0025730.1 mouse_genomes_project 2 56408596 56553666 + MGP_AJ_P0054883 Pkp4 protein_coding nonsense_mediated_decay MGP_AJ_T0054884.1 MGP_AJ_G0025730.1 mouse_genomes_project 2 56447555 56461873 + Pkp4 protein_coding processed_transcript MGP_AJ_T0054885.1 MGP_AJ_G0025730.1 mouse_genomes_project 2 56476575 56603436 + MGP_AJ_P0054885 Pkp4 protein_coding protein_coding MGP_AJ_T0054886.1 MGP_AJ_G0025730.1 mouse_genomes_project 2 56514273 56556537 + Pkp4 protein_coding processed_transcript MGP_AJ_T0054887.1 MGP_AJ_G0025730.1 mouse_genomes_project 2 56571083 56603436 + Pkp4 protein_coding processed_transcript MGP_AJ_T0054888.1 MGP_AJ_G0025730.1 mouse_genomes_project 2 56590395 56596455 + Pkp4 protein_coding processed_transcript MGP_AJ_T0056353.1 MGP_AJ_G0026145.1 mouse_genomes_project 2 91672414 91706060 - Hsd17b12 protein_coding processed_transcript MGP_AJ_T0056354.1 MGP_AJ_G0026145.1 mouse_genomes_project 2 91672414 91796035 - MGP_AJ_P0056354 Hsd17b12 protein_coding protein_coding MGP_AJ_T0056355.1 MGP_AJ_G0026145.1 mouse_genomes_project 2 91672427 91795980 - Hsd17b12 protein_coding processed_transcript MGP_AJ_T0056356.1 MGP_AJ_G0026145.1 mouse_genomes_project 2 91673245 91706355 - Hsd17b12 protein_coding processed_transcript MGP_AJ_T0056357.1 MGP_AJ_G0026145.1 mouse_genomes_project 2 91752766 91795964 - Hsd17b12 protein_coding processed_transcript MGP_AJ_T0010479.1 MGP_AJ_G0008601.1 mouse_genomes_project 2 166692699 166692777 - Gm24327 miRNA miRNA MGP_AJ_T0057506.1 MGP_AJ_G0026417.1 mouse_genomes_project 2 125224354 125231523 - MGP_AJ_P0057506 Ciao1 protein_coding protein_coding MGP_AJ_T0057507.1 MGP_AJ_G0026417.1 mouse_genomes_project 2 125226771 125229949 - Ciao1 protein_coding retained_intron MGP_AJ_T0057508.1 MGP_AJ_G0026417.1 mouse_genomes_project 2 125226898 125231523 - MGP_AJ_P0057508 Ciao1 protein_coding protein_coding MGP_AJ_T0057509.1 MGP_AJ_G0026417.1 mouse_genomes_project 2 125229758 125231523 - MGP_AJ_P0057509 Ciao1 protein_coding nonsense_mediated_decay MGP_AJ_T0017813.1 MGP_AJ_G0015424.1 mouse_genomes_project 2 92047292 92052823 + 2810002D19Rik processed_transcript processed_transcript MGP_AJ_T0057245.1 MGP_AJ_G0026355.1 mouse_genomes_project 2 119267269 119271515 + MGP_AJ_P0057245 Serf2 protein_coding protein_coding MGP_AJ_T0057246.1 MGP_AJ_G0026355.1 mouse_genomes_project 2 119267442 119271100 + Serf2 protein_coding retained_intron MGP_AJ_T0057247.1 MGP_AJ_G0026355.1 mouse_genomes_project 2 119267452 119269384 + MGP_AJ_P0057247 Serf2 protein_coding protein_coding MGP_AJ_T0057248.1 MGP_AJ_G0026355.1 mouse_genomes_project 2 119267457 119269148 + MGP_AJ_P0057248 Serf2 protein_coding protein_coding MGP_AJ_T0057249.1 MGP_AJ_G0026355.1 mouse_genomes_project 2 119267486 119276440 + MGP_AJ_P0057249 Serf2 protein_coding nonsense_mediated_decay MGP_AJ_T0057250.1 MGP_AJ_G0026355.1 mouse_genomes_project 2 119267486 119276438 + MGP_AJ_P0057250 Serf2 protein_coding nonsense_mediated_decay MGP_AJ_T0017804.1 MGP_AJ_G0015419.1 mouse_genomes_project 2 88806809 88813689 - Gm13783 processed_transcript processed_transcript MGP_AJ_T0004123.1 MGP_AJ_G0003644.1 mouse_genomes_project 2 149817369 149818987 - Gm14167 antisense antisense MGP_AJ_T0013541.1 MGP_AJ_G0011636.1 mouse_genomes_project 2 49887073 49887356 + processed_pseudogene processed_pseudogene MGP_AJ_T0010452.1 MGP_AJ_G0008574.1 mouse_genomes_project 2 124874633 124874769 - Mir3473g miRNA miRNA MGP_AJ_T0013665.1 MGP_AJ_G0011760.1 mouse_genomes_project 2 89945737 89946427 + processed_pseudogene processed_pseudogene MGP_AJ_T0055778.1 MGP_AJ_G0025927.1 mouse_genomes_project 2 83542319 83543264 - MGP_AJ_P0055778 Olfr1043 protein_coding protein_coding MGP_AJ_T0055636.1 MGP_AJ_G0025873.1 mouse_genomes_project 2 81823596 81864378 - MGP_AJ_P0055636 Tfpi protein_coding protein_coding MGP_AJ_T0055637.1 MGP_AJ_G0025873.1 mouse_genomes_project 2 81823596 81865873 - MGP_AJ_P0055637 Tfpi protein_coding protein_coding MGP_AJ_T0055638.1 MGP_AJ_G0025873.1 mouse_genomes_project 2 81823601 81825383 - Tfpi protein_coding processed_transcript MGP_AJ_T0055639.1 MGP_AJ_G0025873.1 mouse_genomes_project 2 81823601 81864768 - MGP_AJ_P0055639 Tfpi protein_coding protein_coding MGP_AJ_T0055640.1 MGP_AJ_G0025873.1 mouse_genomes_project 2 81830928 81867352 - MGP_AJ_P0055640 Tfpi protein_coding protein_coding MGP_AJ_T0055641.1 MGP_AJ_G0025873.1 mouse_genomes_project 2 81830928 81867364 - MGP_AJ_P0055641 Tfpi protein_coding protein_coding MGP_AJ_T0055642.1 MGP_AJ_G0025873.1 mouse_genomes_project 2 81830928 81867337 - MGP_AJ_P0055642 Tfpi protein_coding protein_coding MGP_AJ_T0055643.1 MGP_AJ_G0025873.1 mouse_genomes_project 2 81830928 81848830 - MGP_AJ_P0055643 Tfpi protein_coding protein_coding MGP_AJ_T0055644.1 MGP_AJ_G0025873.1 mouse_genomes_project 2 81831511 81864397 - MGP_AJ_P0055644 Tfpi protein_coding protein_coding MGP_AJ_T0055645.1 MGP_AJ_G0025873.1 mouse_genomes_project 2 81834857 81864393 - Tfpi protein_coding processed_transcript MGP_AJ_T0056677.1 MGP_AJ_G0026225.1 mouse_genomes_project 2 109239870 109240767 + MGP_AJ_P0056677 Olfr1289 protein_coding protein_coding MGP_AJ_T0102500.1 MGP_AJ_G0040242.1 mouse_genomes_project 2 86249120 86251491 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0058990.1 MGP_AJ_G0026771.1 mouse_genomes_project 2 159172141 159253631 + MGP_AJ_P0058990 Top1 protein_coding protein_coding MGP_AJ_T0058991.1 MGP_AJ_G0026771.1 mouse_genomes_project 2 159172233 159176361 + Top1 protein_coding processed_transcript MGP_AJ_T0058992.1 MGP_AJ_G0026771.1 mouse_genomes_project 2 159199228 159214874 + Top1 protein_coding retained_intron MGP_AJ_T0058993.1 MGP_AJ_G0026771.1 mouse_genomes_project 2 159215591 159223639 + Top1 protein_coding retained_intron MGP_AJ_T0058994.1 MGP_AJ_G0026771.1 mouse_genomes_project 2 159232491 159234028 + Top1 protein_coding processed_transcript MGP_AJ_T0058995.1 MGP_AJ_G0026771.1 mouse_genomes_project 2 159248353 159252251 + Top1 protein_coding retained_intron MGP_AJ_T0102462.1 MGP_AJ_G0040204.1 mouse_genomes_project 2 33529819 33530272 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0013820.1 MGP_AJ_G0011915.1 mouse_genomes_project 2 149194660 149195443 + processed_pseudogene processed_pseudogene MGP_AJ_T0013528.1 MGP_AJ_G0011623.1 mouse_genomes_project 2 46660835 46661610 - processed_pseudogene processed_pseudogene MGP_AJ_T0101770.1 MGP_AJ_G0039692.1 mouse_genomes_project 2 103219843 103220233 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0052893.1 MGP_AJ_G0025377.1 mouse_genomes_project 2 20249765 20338952 + MGP_AJ_P0052893 Nxph2 protein_coding protein_coding MGP_AJ_T0055672.1 MGP_AJ_G0025878.1 mouse_genomes_project 2 82052582 82063086 - MGP_AJ_P0055672 Tmx2 protein_coding unknown_likely_coding MGP_AJ_T0055678.1 MGP_AJ_G0025878.1 mouse_genomes_project 2 82054677 82063875 - MGP_AJ_P0055678 Tmx2 protein_coding protein_coding MGP_AJ_T0055679.1 MGP_AJ_G0025878.1 mouse_genomes_project 2 82057493 82063090 - Tmx2 protein_coding processed_transcript MGP_AJ_T0055680.1 MGP_AJ_G0025878.1 mouse_genomes_project 2 82061162 82064187 - MGP_AJ_P0055680 Tmx2 protein_coding protein_coding MGP_AJ_T0058151.1 MGP_AJ_G0026566.1 mouse_genomes_project 2 145190097 145192224 - MGP_AJ_P0058151 Nkx2-4 protein_coding protein_coding MGP_AJ_T0058394.1 MGP_AJ_G0026650.1 mouse_genomes_project 2 151310675 151317238 - MGP_AJ_P0058394 Pdrg1 protein_coding nonsense_mediated_decay MGP_AJ_T0058395.1 MGP_AJ_G0026650.1 mouse_genomes_project 2 151310675 151317238 - MGP_AJ_P0058395 Pdrg1 protein_coding protein_coding MGP_AJ_T0058396.1 MGP_AJ_G0026650.1 mouse_genomes_project 2 151311255 151314290 - Pdrg1 protein_coding retained_intron MGP_AJ_T0058397.1 MGP_AJ_G0026650.1 mouse_genomes_project 2 151312080 151317177 - MGP_AJ_P0058397 Pdrg1 protein_coding nonsense_mediated_decay MGP_AJ_T0058398.1 MGP_AJ_G0026650.1 mouse_genomes_project 2 151314012 151317157 - Pdrg1 protein_coding retained_intron MGP_AJ_T0058399.1 MGP_AJ_G0026650.1 mouse_genomes_project 2 151314182 151317173 - MGP_AJ_P0058399 Pdrg1 protein_coding nonsense_mediated_decay MGP_AJ_T0058400.1 MGP_AJ_G0026650.1 mouse_genomes_project 2 151315150 151317188 - Pdrg1 protein_coding retained_intron MGP_AJ_T0058401.1 MGP_AJ_G0026650.1 mouse_genomes_project 2 151315814 151317153 - Pdrg1 protein_coding processed_transcript MGP_AJ_T0055962.1 MGP_AJ_G0026077.1 mouse_genomes_project 2 87581130 87585577 + MGP_AJ_P0055962 Olfr1261 protein_coding protein_coding MGP_AJ_T0055963.1 MGP_AJ_G0026077.1 mouse_genomes_project 2 87583246 87585577 + MGP_AJ_P0055963 Olfr1261 protein_coding protein_coding MGP_AJ_T0011492.1 MGP_AJ_G0009614.1 mouse_genomes_project 2 30984869 30985239 + Nron misc_RNA misc_RNA MGP_AJ_T0003961.1 MGP_AJ_G0003531.1 mouse_genomes_project 2 31473299 31490074 + C79798 antisense antisense MGP_AJ_T0102478.1 MGP_AJ_G0040220.1 mouse_genomes_project 2 83323437 83324779 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0058947.1 MGP_AJ_G0026760.1 mouse_genomes_project 2 156924502 157013286 + MGP_AJ_P0058947 Ralgapb protein_coding protein_coding MGP_AJ_T0058948.1 MGP_AJ_G0026760.1 mouse_genomes_project 2 156924507 157013286 + MGP_AJ_P0058948 Ralgapb protein_coding protein_coding MGP_AJ_T0058949.1 MGP_AJ_G0026760.1 mouse_genomes_project 2 156924530 156942719 + Ralgapb protein_coding retained_intron MGP_AJ_T0058950.1 MGP_AJ_G0026760.1 mouse_genomes_project 2 156924533 156954808 + Ralgapb protein_coding retained_intron MGP_AJ_T0058951.1 MGP_AJ_G0026760.1 mouse_genomes_project 2 156924536 156958450 + Ralgapb protein_coding processed_transcript MGP_AJ_T0058952.1 MGP_AJ_G0026760.1 mouse_genomes_project 2 156924605 157011693 + MGP_AJ_P0058952 Ralgapb protein_coding protein_coding MGP_AJ_T0058953.1 MGP_AJ_G0026760.1 mouse_genomes_project 2 156924756 156935567 + MGP_AJ_P0058953 Ralgapb protein_coding protein_coding MGP_AJ_T0058954.1 MGP_AJ_G0026760.1 mouse_genomes_project 2 156951715 157013286 + MGP_AJ_P0058954 Ralgapb protein_coding protein_coding MGP_AJ_T0058955.1 MGP_AJ_G0026760.1 mouse_genomes_project 2 156980898 156988423 + Ralgapb protein_coding retained_intron MGP_AJ_T0058956.1 MGP_AJ_G0026760.1 mouse_genomes_project 2 156992730 156999724 + Ralgapb protein_coding processed_transcript MGP_AJ_T0102516.1 MGP_AJ_G0040258.1 mouse_genomes_project 2 127387184 127388310 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0057126.1 MGP_AJ_G0026337.1 mouse_genomes_project 2 118785265 118817033 + MGP_AJ_P0057126 Tmem62 protein_coding nonsense_mediated_decay MGP_AJ_T0057127.1 MGP_AJ_G0026337.1 mouse_genomes_project 2 118785547 118817025 + MGP_AJ_P0057127 Tmem62 protein_coding protein_coding MGP_AJ_T0057128.1 MGP_AJ_G0026337.1 mouse_genomes_project 2 118785918 118788794 + Tmem62 protein_coding retained_intron MGP_AJ_T0057129.1 MGP_AJ_G0026337.1 mouse_genomes_project 2 118789256 118799737 + Tmem62 protein_coding processed_transcript MGP_AJ_T0057130.1 MGP_AJ_G0026337.1 mouse_genomes_project 2 118792537 118795127 + Tmem62 protein_coding processed_transcript MGP_AJ_T0057131.1 MGP_AJ_G0026337.1 mouse_genomes_project 2 118805515 118816224 + Tmem62 protein_coding retained_intron MGP_AJ_T0052783.1 MGP_AJ_G0025357.1 mouse_genomes_project 2 16051777 16053254 + MGP_AJ_P0052783 protein_coding protein_coding MGP_AJ_T0007392.1 MGP_AJ_G0006058.1 mouse_genomes_project 2 164545041 164553952 - Platr29 lincRNA lincRNA MGP_AJ_T0057096.1 MGP_AJ_G0026333.1 mouse_genomes_project 2 118449484 118498095 + MGP_AJ_P0057096 protein_coding protein_coding MGP_AJ_T0057097.1 MGP_AJ_G0026333.1 mouse_genomes_project 2 118449582 118534509 + MGP_AJ_P0057097 protein_coding protein_coding MGP_AJ_T0057098.1 MGP_AJ_G0026333.1 mouse_genomes_project 2 118449582 118534266 + MGP_AJ_P0057098 protein_coding unknown_likely_coding MGP_AJ_T0057099.1 MGP_AJ_G0026333.1 mouse_genomes_project 2 118500149 118534509 + MGP_AJ_P0057099 protein_coding protein_coding MGP_AJ_T0057100.1 MGP_AJ_G0026333.1 mouse_genomes_project 2 118517509 118534259 + MGP_AJ_P0057100 protein_coding protein_coding MGP_AJ_T0057101.1 MGP_AJ_G0026333.1 mouse_genomes_project 2 118520760 118550280 + MGP_AJ_P0057101 protein_coding nonsense_mediated_decay MGP_AJ_T0057102.1 MGP_AJ_G0026333.1 mouse_genomes_project 2 118532140 118534307 + protein_coding retained_intron MGP_AJ_T0057103.1 MGP_AJ_G0026333.1 mouse_genomes_project 2 118533694 118547750 + protein_coding processed_transcript MGP_AJ_T0007287.1 MGP_AJ_G0005971.1 mouse_genomes_project 2 101007656 101019018 - BC016548 lincRNA lincRNA MGP_AJ_T0007288.1 MGP_AJ_G0005971.1 mouse_genomes_project 2 101013970 101019016 - BC016548 lincRNA lincRNA MGP_AJ_T0055782.1 MGP_AJ_G0025931.1 mouse_genomes_project 2 83622078 83623038 - MGP_AJ_P0055782 Olfr1047 protein_coding protein_coding MGP_AJ_T0056686.1 MGP_AJ_G0026234.1 mouse_genomes_project 2 109568921 109570812 - MGP_AJ_P0056686 Olfr1303 protein_coding protein_coding MGP_AJ_T0010397.1 MGP_AJ_G0008519.1 mouse_genomes_project 2 29460770 29460849 + Gm23363 miRNA miRNA MGP_AJ_T0013514.1 MGP_AJ_G0011609.1 mouse_genomes_project 2 37546590 37547107 + processed_pseudogene processed_pseudogene MGP_AJ_T0098795.1 MGP_AJ_G0036779.1 mouse_genomes_project 2 104771883 104772153 - Gm24885 ribozyme ribozyme MGP_AJ_T0052593.1 MGP_AJ_G0025326.1 mouse_genomes_project 2 8819890 8820874 + MGP_AJ_P0052593 Ankrd16 protein_coding protein_coding MGP_AJ_T0052594.1 MGP_AJ_G0025326.1 mouse_genomes_project 2 8820505 8837498 + MGP_AJ_P0052594 Ankrd16 protein_coding protein_coding MGP_AJ_T0052595.1 MGP_AJ_G0025326.1 mouse_genomes_project 2 8820538 8837502 + Ankrd16 protein_coding retained_intron MGP_AJ_T0052596.1 MGP_AJ_G0025326.1 mouse_genomes_project 2 8820541 8837476 + Ankrd16 protein_coding retained_intron MGP_AJ_T0052597.1 MGP_AJ_G0025326.1 mouse_genomes_project 2 8820578 8837498 + MGP_AJ_P0052597 Ankrd16 protein_coding nonsense_mediated_decay MGP_AJ_T0052598.1 MGP_AJ_G0025326.1 mouse_genomes_project 2 8820586 8823279 + Ankrd16 protein_coding retained_intron MGP_AJ_T0052599.1 MGP_AJ_G0025326.1 mouse_genomes_project 2 8821899 8836941 + MGP_AJ_P0052599 Ankrd16 protein_coding nonsense_mediated_decay MGP_AJ_T0052600.1 MGP_AJ_G0025326.1 mouse_genomes_project 2 8825303 8837493 + Ankrd16 protein_coding retained_intron MGP_AJ_T0052601.1 MGP_AJ_G0025326.1 mouse_genomes_project 2 8825323 8837087 + Ankrd16 protein_coding retained_intron MGP_AJ_T0052602.1 MGP_AJ_G0025326.1 mouse_genomes_project 2 8826219 8837474 + Ankrd16 protein_coding retained_intron MGP_AJ_T0052603.1 MGP_AJ_G0025326.1 mouse_genomes_project 2 8826307 8837469 + MGP_AJ_P0052603 Ankrd16 protein_coding nonsense_mediated_decay MGP_AJ_T0052604.1 MGP_AJ_G0025326.1 mouse_genomes_project 2 8828172 8837295 + Ankrd16 protein_coding retained_intron MGP_AJ_T0013857.1 MGP_AJ_G0011952.1 mouse_genomes_project 2 159830925 159831382 + processed_pseudogene processed_pseudogene MGP_AJ_T0013431.1 MGP_AJ_G0011526.1 mouse_genomes_project 2 11804276 11805267 + processed_pseudogene processed_pseudogene MGP_AJ_T0052883.1 MGP_AJ_G0025374.1 mouse_genomes_project 2 20018520 20061287 - MGP_AJ_P0052883 Mastl protein_coding protein_coding MGP_AJ_T0052884.1 MGP_AJ_G0025374.1 mouse_genomes_project 2 20041940 20061160 - Mastl protein_coding processed_transcript MGP_AJ_T0055458.1 MGP_AJ_G0025842.1 mouse_genomes_project 2 73815471 73816895 + Osbpl6 protein_coding processed_transcript MGP_AJ_T0055459.1 MGP_AJ_G0025842.1 mouse_genomes_project 2 73815501 74003040 + MGP_AJ_P0055459 Osbpl6 protein_coding protein_coding MGP_AJ_T0055460.1 MGP_AJ_G0025842.1 mouse_genomes_project 2 73815501 74003044 + MGP_AJ_P0055460 Osbpl6 protein_coding protein_coding MGP_AJ_T0055461.1 MGP_AJ_G0025842.1 mouse_genomes_project 2 73815521 73998993 + MGP_AJ_P0055461 Osbpl6 protein_coding protein_coding MGP_AJ_T0055462.1 MGP_AJ_G0025842.1 mouse_genomes_project 2 73815524 73816431 + Osbpl6 protein_coding processed_transcript MGP_AJ_T0055463.1 MGP_AJ_G0025842.1 mouse_genomes_project 2 73901361 73943804 + Osbpl6 protein_coding processed_transcript MGP_AJ_T0055464.1 MGP_AJ_G0025842.1 mouse_genomes_project 2 73950549 73998442 + MGP_AJ_P0055464 Osbpl6 protein_coding nonsense_mediated_decay MGP_AJ_T0055465.1 MGP_AJ_G0025842.1 mouse_genomes_project 2 73970329 73982220 + Osbpl6 protein_coding processed_transcript MGP_AJ_T0057485.1 MGP_AJ_G0026412.1 mouse_genomes_project 2 125049185 125067178 + Blvra protein_coding retained_intron MGP_AJ_T0057486.1 MGP_AJ_G0026412.1 mouse_genomes_project 2 125049187 125076451 + MGP_AJ_P0057486 Blvra protein_coding protein_coding MGP_AJ_T0057487.1 MGP_AJ_G0026412.1 mouse_genomes_project 2 125049199 125069610 + MGP_AJ_P0057487 Blvra protein_coding protein_coding MGP_AJ_T0057488.1 MGP_AJ_G0026412.1 mouse_genomes_project 2 125049213 125066727 + MGP_AJ_P0057488 Blvra protein_coding protein_coding MGP_AJ_T0057489.1 MGP_AJ_G0026412.1 mouse_genomes_project 2 125058844 125071403 + MGP_AJ_P0057489 Blvra protein_coding protein_coding MGP_AJ_T0101037.1 MGP_AJ_G0039003.1 mouse_genomes_project 2 51912381 51912520 - Gm24549 snoRNA snoRNA MGP_AJ_T0056703.1 MGP_AJ_G0026248.1 mouse_genomes_project 2 110010474 110099667 + MGP_AJ_P0056703 Slc12a6 protein_coding protein_coding MGP_AJ_T0056705.1 MGP_AJ_G0026248.1 mouse_genomes_project 2 110011391 110096569 + MGP_AJ_P0056705 Slc12a6 protein_coding protein_coding MGP_AJ_T0056706.1 MGP_AJ_G0026248.1 mouse_genomes_project 2 110011468 110103811 + MGP_AJ_P0056706 Slc12a6 protein_coding protein_coding MGP_AJ_T0056707.1 MGP_AJ_G0026248.1 mouse_genomes_project 2 110030212 110103811 + MGP_AJ_P0056707 Slc12a6 protein_coding protein_coding MGP_AJ_T0056708.1 MGP_AJ_G0026248.1 mouse_genomes_project 2 110087470 110092109 + Slc12a6 protein_coding processed_transcript MGP_AJ_T0056709.1 MGP_AJ_G0026248.1 mouse_genomes_project 2 110093065 110094778 + Slc12a6 protein_coding processed_transcript MGP_AJ_T0056710.1 MGP_AJ_G0026248.1 mouse_genomes_project 2 110094741 110097427 + Slc12a6 protein_coding processed_transcript MGP_AJ_T0056711.1 MGP_AJ_G0026248.1 mouse_genomes_project 2 110096734 110103818 + Slc12a6 protein_coding retained_intron MGP_AJ_T0013604.1 MGP_AJ_G0011699.1 mouse_genomes_project 2 72267530 72268165 - processed_pseudogene processed_pseudogene MGP_AJ_T0013498.1 MGP_AJ_G0011593.1 mouse_genomes_project 2 34707097 34707867 + processed_pseudogene processed_pseudogene MGP_AJ_T0054744.1 MGP_AJ_G0025701.1 mouse_genomes_project 2 47400518 47528368 + MGP_AJ_P0054744 Lypd6 protein_coding protein_coding MGP_AJ_T0054745.1 MGP_AJ_G0025701.1 mouse_genomes_project 2 47400551 47525469 + MGP_AJ_P0054745 Lypd6 protein_coding protein_coding MGP_AJ_T0054746.1 MGP_AJ_G0025701.1 mouse_genomes_project 2 47400553 47528363 + MGP_AJ_P0054746 Lypd6 protein_coding protein_coding MGP_AJ_T0054747.1 MGP_AJ_G0025701.1 mouse_genomes_project 2 47463890 47528362 + MGP_AJ_P0054747 Lypd6 protein_coding protein_coding MGP_AJ_T0054748.1 MGP_AJ_G0025701.1 mouse_genomes_project 2 47500889 47508854 + MGP_AJ_P0054748 Lypd6 protein_coding protein_coding MGP_AJ_T0001022.1 MGP_AJ_G0000953.1 mouse_genomes_project 2 7066345 7068027 + TEC TEC MGP_AJ_T0013767.1 MGP_AJ_G0011862.1 mouse_genomes_project 2 130714807 130715262 + processed_pseudogene processed_pseudogene MGP_AJ_T0055049.1 MGP_AJ_G0025754.1 mouse_genomes_project 2 62607974 62655451 - MGP_AJ_P0055049 Slc38a11 protein_coding protein_coding MGP_AJ_T0055050.1 MGP_AJ_G0025754.1 mouse_genomes_project 2 62608029 62655907 - MGP_AJ_P0055050 Slc38a11 protein_coding protein_coding MGP_AJ_T0055051.1 MGP_AJ_G0025754.1 mouse_genomes_project 2 62614173 62656022 - MGP_AJ_P0055051 Slc38a11 protein_coding protein_coding MGP_AJ_T0055052.1 MGP_AJ_G0025754.1 mouse_genomes_project 2 62641474 62656022 - Slc38a11 protein_coding processed_transcript MGP_AJ_T0055053.1 MGP_AJ_G0025754.1 mouse_genomes_project 2 62642038 62655988 - MGP_AJ_P0055053 Slc38a11 protein_coding protein_coding MGP_AJ_T0055054.1 MGP_AJ_G0025754.1 mouse_genomes_project 2 62644887 62655911 - Slc38a11 protein_coding processed_transcript MGP_AJ_T0055055.1 MGP_AJ_G0025754.1 mouse_genomes_project 2 62646796 62656018 - Slc38a11 protein_coding processed_transcript MGP_AJ_T0101042.1 MGP_AJ_G0039008.1 mouse_genomes_project 2 62668174 62668288 - Gm24138 snoRNA snoRNA MGP_AJ_T0099775.1 MGP_AJ_G0037741.1 mouse_genomes_project 2 100529075 100529182 + Gm23731 snRNA snRNA MGP_AJ_T0098651.1 MGP_AJ_G0036635.1 mouse_genomes_project 2 82086601 82086714 - n-R5s200 rRNA rRNA MGP_AJ_T0055946.1 MGP_AJ_G0026069.1 mouse_genomes_project 2 87390727 87395492 - MGP_AJ_P0055946 Olfr1254 protein_coding protein_coding MGP_AJ_T0055947.1 MGP_AJ_G0026069.1 mouse_genomes_project 2 87390727 87391672 - MGP_AJ_P0055947 Olfr1254 protein_coding protein_coding MGP_AJ_T0001086.1 MGP_AJ_G0001015.1 mouse_genomes_project 2 66260064 66264302 + TEC TEC MGP_AJ_T0059531.1 MGP_AJ_G0026900.1 mouse_genomes_project 2 168771683 168797515 - MGP_AJ_P0059531 Zfp217 protein_coding unknown_likely_coding MGP_AJ_T0059532.1 MGP_AJ_G0026900.1 mouse_genomes_project 2 168783374 168797809 - Zfp217 protein_coding processed_transcript MGP_AJ_T0059533.1 MGP_AJ_G0026900.1 mouse_genomes_project 2 168783660 168800545 - Zfp217 protein_coding processed_transcript MGP_AJ_T0059534.1 MGP_AJ_G0026900.1 mouse_genomes_project 2 168783760 168814669 - Zfp217 protein_coding processed_transcript MGP_AJ_T0017783.1 MGP_AJ_G0015404.1 mouse_genomes_project 2 72064775 72075495 + Gm28309 processed_transcript processed_transcript MGP_AJ_T0057217.1 MGP_AJ_G0026349.1 mouse_genomes_project 2 119170701 119173028 + MGP_AJ_P0057217 Ckmt1 protein_coding protein_coding MGP_AJ_T0057218.1 MGP_AJ_G0026349.1 mouse_genomes_project 2 119170763 119176696 + MGP_AJ_P0057218 Ckmt1 protein_coding protein_coding MGP_AJ_T0057219.1 MGP_AJ_G0026349.1 mouse_genomes_project 2 119170827 119172765 + MGP_AJ_P0057219 Ckmt1 protein_coding protein_coding MGP_AJ_T0057220.1 MGP_AJ_G0026349.1 mouse_genomes_project 2 119170894 119173950 + MGP_AJ_P0057220 Ckmt1 protein_coding protein_coding MGP_AJ_T0057221.1 MGP_AJ_G0026349.1 mouse_genomes_project 2 119171599 119176696 + MGP_AJ_P0057221 Ckmt1 protein_coding protein_coding MGP_AJ_T0057222.1 MGP_AJ_G0026349.1 mouse_genomes_project 2 119171645 119173947 + MGP_AJ_P0057222 Ckmt1 protein_coding nonsense_mediated_decay MGP_AJ_T0057223.1 MGP_AJ_G0026349.1 mouse_genomes_project 2 119171648 119173349 + Ckmt1 protein_coding retained_intron MGP_AJ_T0057224.1 MGP_AJ_G0026349.1 mouse_genomes_project 2 119171655 119173589 + MGP_AJ_P0057224 Ckmt1 protein_coding protein_coding MGP_AJ_T0057225.1 MGP_AJ_G0026349.1 mouse_genomes_project 2 119171833 119173007 + MGP_AJ_P0057225 Ckmt1 protein_coding nonsense_mediated_decay MGP_AJ_T0057226.1 MGP_AJ_G0026349.1 mouse_genomes_project 2 119175880 119176695 + Ckmt1 protein_coding retained_intron MGP_AJ_T0013775.1 MGP_AJ_G0011870.1 mouse_genomes_project 2 134486141 134486783 + processed_pseudogene processed_pseudogene MGP_AJ_T0055896.1 MGP_AJ_G0026030.1 mouse_genomes_project 2 86466047 86467740 + MGP_AJ_P0055896 Olfr1202 protein_coding protein_coding MGP_AJ_T0001101.1 MGP_AJ_G0001029.1 mouse_genomes_project 2 147012276 147012641 - TEC TEC MGP_AJ_T0013725.1 MGP_AJ_G0011820.1 mouse_genomes_project 2 110151471 110154737 + processed_pseudogene processed_pseudogene MGP_AJ_T0013848.1 MGP_AJ_G0011943.1 mouse_genomes_project 2 155492042 155492762 - processed_pseudogene processed_pseudogene MGP_AJ_T0098655.1 MGP_AJ_G0036639.1 mouse_genomes_project 2 110210407 110210521 - n-R5s202 rRNA rRNA MGP_AJ_T0052676.1 MGP_AJ_G0025339.1 mouse_genomes_project 2 11309465 11414025 + MGP_AJ_P0052676 Mrc1 protein_coding protein_coding MGP_AJ_T0052677.1 MGP_AJ_G0025339.1 mouse_genomes_project 2 11410528 11413895 + Mrc1 protein_coding retained_intron MGP_AJ_T0054167.1 MGP_AJ_G0025590.1 mouse_genomes_project 2 29734434 29748279 + MGP_AJ_P0054167 St6galnac4 protein_coding protein_coding MGP_AJ_T0054168.1 MGP_AJ_G0025590.1 mouse_genomes_project 2 29734478 29741615 + St6galnac4 protein_coding retained_intron MGP_AJ_T0054169.1 MGP_AJ_G0025590.1 mouse_genomes_project 2 29734920 29745041 + St6galnac4 protein_coding retained_intron MGP_AJ_T0054170.1 MGP_AJ_G0025590.1 mouse_genomes_project 2 29734964 29746415 + MGP_AJ_P0054170 St6galnac4 protein_coding protein_coding MGP_AJ_T0054171.1 MGP_AJ_G0025590.1 mouse_genomes_project 2 29741615 29744529 + MGP_AJ_P0054171 St6galnac4 protein_coding nonsense_mediated_decay MGP_AJ_T0054948.1 MGP_AJ_G0025739.1 mouse_genomes_project 2 57883840 57961354 - MGP_AJ_P0054948 Itgb6 protein_coding protein_coding MGP_AJ_T0054949.1 MGP_AJ_G0025739.1 mouse_genomes_project 2 57885877 58012104 - MGP_AJ_P0054949 Itgb6 protein_coding protein_coding MGP_AJ_T0054950.1 MGP_AJ_G0025739.1 mouse_genomes_project 2 57889891 58012104 - MGP_AJ_P0054950 Itgb6 protein_coding protein_coding MGP_AJ_T0054951.1 MGP_AJ_G0025739.1 mouse_genomes_project 2 57890785 57961369 - MGP_AJ_P0054951 Itgb6 protein_coding protein_coding MGP_AJ_T0054952.1 MGP_AJ_G0025739.1 mouse_genomes_project 2 57921354 57961336 - Itgb6 protein_coding processed_transcript MGP_AJ_T0054953.1 MGP_AJ_G0025739.1 mouse_genomes_project 2 57940022 57961397 - Itgb6 protein_coding processed_transcript MGP_AJ_T0054954.1 MGP_AJ_G0025739.1 mouse_genomes_project 2 57956890 57961346 - Itgb6 protein_coding processed_transcript MGP_AJ_T0054955.1 MGP_AJ_G0025739.1 mouse_genomes_project 2 57962385 57994297 - Itgb6 protein_coding processed_transcript MGP_AJ_T0054956.1 MGP_AJ_G0025739.1 mouse_genomes_project 2 57982142 57994274 - Itgb6 protein_coding processed_transcript MGP_AJ_T0003913.1 MGP_AJ_G0003496.1 mouse_genomes_project 2 17744831 17748691 - Gm13362 antisense antisense MGP_AJ_T0054451.1 MGP_AJ_G0025633.1 mouse_genomes_project 2 32753921 32927918 + MGP_AJ_P0054451 Dab2ip protein_coding protein_coding MGP_AJ_T0054452.1 MGP_AJ_G0025633.1 mouse_genomes_project 2 32778485 32927916 + MGP_AJ_P0054452 Dab2ip protein_coding protein_coding MGP_AJ_T0054453.1 MGP_AJ_G0025633.1 mouse_genomes_project 2 32818727 32927916 + MGP_AJ_P0054453 Dab2ip protein_coding nonsense_mediated_decay MGP_AJ_T0054454.1 MGP_AJ_G0025633.1 mouse_genomes_project 2 32818906 32927916 + MGP_AJ_P0054454 Dab2ip protein_coding protein_coding MGP_AJ_T0054455.1 MGP_AJ_G0025633.1 mouse_genomes_project 2 32818906 32927920 + MGP_AJ_P0054455 Dab2ip protein_coding protein_coding MGP_AJ_T0054456.1 MGP_AJ_G0025633.1 mouse_genomes_project 2 32857696 32905793 + Dab2ip protein_coding retained_intron MGP_AJ_T0054457.1 MGP_AJ_G0025633.1 mouse_genomes_project 2 32857887 32927918 + MGP_AJ_P0054457 Dab2ip protein_coding nonsense_mediated_decay MGP_AJ_T0054458.1 MGP_AJ_G0025633.1 mouse_genomes_project 2 32857965 32906879 + Dab2ip protein_coding processed_transcript MGP_AJ_T0054459.1 MGP_AJ_G0025633.1 mouse_genomes_project 2 32888939 32927916 + MGP_AJ_P0054459 Dab2ip protein_coding protein_coding MGP_AJ_T0054460.1 MGP_AJ_G0025633.1 mouse_genomes_project 2 32889278 32925867 + MGP_AJ_P0054460 Dab2ip protein_coding protein_coding MGP_AJ_T0054461.1 MGP_AJ_G0025633.1 mouse_genomes_project 2 32907272 32927918 + MGP_AJ_P0054461 Dab2ip protein_coding protein_coding MGP_AJ_T0053265.1 MGP_AJ_G0025450.1 mouse_genomes_project 2 22852616 22856870 - MGP_AJ_P0053265 Sohlh1 protein_coding protein_coding MGP_AJ_T0054507.1 MGP_AJ_G0025652.1 mouse_genomes_project 2 34002021 34002963 - MGP_AJ_P0054507 Olfr3 protein_coding protein_coding MGP_AJ_T0056690.1 MGP_AJ_G0026238.1 mouse_genomes_project 2 109715817 109716780 - MGP_AJ_P0056690 Olfr1309 protein_coding protein_coding MGP_AJ_T0055599.1 MGP_AJ_G0025864.1 mouse_genomes_project 2 78081165 78124689 + Gm4353 protein_coding retained_intron MGP_AJ_T0055601.1 MGP_AJ_G0025864.1 mouse_genomes_project 2 78103288 78124685 + MGP_AJ_P0055601 Gm4353 protein_coding protein_coding MGP_AJ_T0055603.1 MGP_AJ_G0025864.1 mouse_genomes_project 2 78103304 78121788 + MGP_AJ_P0055603 Gm4353 protein_coding protein_coding MGP_AJ_T0055604.1 MGP_AJ_G0025864.1 mouse_genomes_project 2 78103740 78110959 + Gm4353 protein_coding processed_transcript MGP_AJ_T0055605.1 MGP_AJ_G0025864.1 mouse_genomes_project 2 78108697 78119202 + Gm4353 protein_coding processed_transcript MGP_AJ_T0058640.1 MGP_AJ_G0026711.1 mouse_genomes_project 2 154284249 154291992 - MGP_AJ_P0058640 protein_coding unknown_likely_coding MGP_AJ_T0058641.1 MGP_AJ_G0026711.1 mouse_genomes_project 2 154284255 154286899 - protein_coding processed_transcript MGP_AJ_T0058642.1 MGP_AJ_G0026711.1 mouse_genomes_project 2 154284451 154290911 - MGP_AJ_P0058642 protein_coding nonsense_mediated_decay MGP_AJ_T0058643.1 MGP_AJ_G0026711.1 mouse_genomes_project 2 154287255 154290911 - protein_coding retained_intron MGP_AJ_T0058644.1 MGP_AJ_G0026711.1 mouse_genomes_project 2 154287255 154290911 - MGP_AJ_P0058644 protein_coding nonsense_mediated_decay MGP_AJ_T0058645.1 MGP_AJ_G0026711.1 mouse_genomes_project 2 154288293 154291241 - MGP_AJ_P0058645 protein_coding protein_coding MGP_AJ_T0058646.1 MGP_AJ_G0026711.1 mouse_genomes_project 2 154289537 154291138 - MGP_AJ_P0058646 protein_coding protein_coding MGP_AJ_T0003917.1 MGP_AJ_G0003500.1 mouse_genomes_project 2 22270511 22279567 + Grin1os antisense antisense MGP_AJ_T0010474.1 MGP_AJ_G0008596.1 mouse_genomes_project 2 157592278 157592371 + Gm44319 miRNA miRNA MGP_AJ_T0007136.1 MGP_AJ_G0005851.1 mouse_genomes_project 2 4068719 4072664 + Gm26565 lincRNA lincRNA MGP_AJ_T0010424.1 MGP_AJ_G0008546.1 mouse_genomes_project 2 74481745 74481827 - Gm44360 miRNA miRNA MGP_AJ_T0057912.1 MGP_AJ_G0026512.1 mouse_genomes_project 2 130905151 130923436 + MGP_AJ_P0057912 Crls1 protein_coding protein_coding MGP_AJ_T0057913.1 MGP_AJ_G0026512.1 mouse_genomes_project 2 130905163 130926086 + MGP_AJ_P0057913 Crls1 protein_coding nonsense_mediated_decay MGP_AJ_T0057914.1 MGP_AJ_G0026512.1 mouse_genomes_project 2 130905292 130926081 + MGP_AJ_P0057914 Crls1 protein_coding protein_coding MGP_AJ_T0057915.1 MGP_AJ_G0026512.1 mouse_genomes_project 2 130906213 130925188 + MGP_AJ_P0057915 Crls1 protein_coding protein_coding MGP_AJ_T0055116.1 MGP_AJ_G0025768.1 mouse_genomes_project 2 65862829 65897374 + MGP_AJ_P0055116 4933409G03Rik protein_coding protein_coding MGP_AJ_T0055117.1 MGP_AJ_G0025768.1 mouse_genomes_project 2 65872723 65895692 + MGP_AJ_P0055117 4933409G03Rik protein_coding protein_coding MGP_AJ_T0059445.1 MGP_AJ_G0026880.1 mouse_genomes_project 2 166087365 166098412 - MGP_AJ_P0059445 Spata2 protein_coding protein_coding MGP_AJ_T0059446.1 MGP_AJ_G0026880.1 mouse_genomes_project 2 166087665 166098370 - MGP_AJ_P0059446 Spata2 protein_coding protein_coding MGP_AJ_T0059447.1 MGP_AJ_G0026880.1 mouse_genomes_project 2 166090070 166091381 - Spata2 protein_coding retained_intron MGP_AJ_T0059448.1 MGP_AJ_G0026880.1 mouse_genomes_project 2 166090905 166098397 - Spata2 protein_coding processed_transcript MGP_AJ_T0059449.1 MGP_AJ_G0026880.1 mouse_genomes_project 2 166090956 166098370 - Spata2 protein_coding processed_transcript MGP_AJ_T0059450.1 MGP_AJ_G0026880.1 mouse_genomes_project 2 166091063 166098403 - Spata2 protein_coding processed_transcript MGP_AJ_T0013819.1 MGP_AJ_G0011914.1 mouse_genomes_project 2 149147392 149147875 - processed_pseudogene processed_pseudogene MGP_AJ_T0013501.1 MGP_AJ_G0011596.1 mouse_genomes_project 2 35713658 35713793 + processed_pseudogene processed_pseudogene MGP_AJ_T0057232.1 MGP_AJ_G0026351.1 mouse_genomes_project 2 119205104 119227189 - MGP_AJ_P0057232 Catsper2 protein_coding nonsense_mediated_decay MGP_AJ_T0057233.1 MGP_AJ_G0026351.1 mouse_genomes_project 2 119205107 119227355 - MGP_AJ_P0057233 Catsper2 protein_coding unknown_likely_coding MGP_AJ_T0057234.1 MGP_AJ_G0026351.1 mouse_genomes_project 2 119206830 119227372 - MGP_AJ_P0057234 Catsper2 protein_coding protein_coding MGP_AJ_T0057235.1 MGP_AJ_G0026351.1 mouse_genomes_project 2 119206832 119209728 - Catsper2 protein_coding retained_intron MGP_AJ_T0057236.1 MGP_AJ_G0026351.1 mouse_genomes_project 2 119222617 119225730 - Catsper2 protein_coding retained_intron MGP_AJ_T0055940.1 MGP_AJ_G0026065.1 mouse_genomes_project 2 87231503 87232448 - MGP_AJ_P0055940 Olfr1247 protein_coding protein_coding MGP_AJ_T0055941.1 MGP_AJ_G0026065.1 mouse_genomes_project 2 87231503 87236371 - MGP_AJ_P0055941 Olfr1247 protein_coding protein_coding MGP_AJ_T0055942.1 MGP_AJ_G0026065.1 mouse_genomes_project 2 87232204 87233993 - MGP_AJ_P0055942 Olfr1247 protein_coding protein_coding MGP_AJ_T0055855.1 MGP_AJ_G0025993.1 mouse_genomes_project 2 85302047 85302983 - MGP_AJ_P0055855 Olfr1141 protein_coding protein_coding MGP_AJ_T0013535.1 MGP_AJ_G0011630.1 mouse_genomes_project 2 48553753 48554577 + processed_pseudogene processed_pseudogene MGP_AJ_T0101016.1 MGP_AJ_G0038982.1 mouse_genomes_project 2 23659651 23659778 - Snora43 snoRNA snoRNA MGP_AJ_T0058166.1 MGP_AJ_G0026573.1 mouse_genomes_project 2 146796953 146800884 + MGP_AJ_P0058166 Nxt1 protein_coding protein_coding MGP_AJ_T0058167.1 MGP_AJ_G0026573.1 mouse_genomes_project 2 146796978 146800884 + MGP_AJ_P0058167 Nxt1 protein_coding protein_coding MGP_AJ_T0004105.1 MGP_AJ_G0003630.1 mouse_genomes_project 2 134215236 134218392 + Gm14218 antisense antisense MGP_AJ_T0013652.1 MGP_AJ_G0011747.1 mouse_genomes_project 2 85070903 85071753 - processed_pseudogene processed_pseudogene MGP_AJ_T0056687.1 MGP_AJ_G0026235.1 mouse_genomes_project 2 109625987 109626926 - MGP_AJ_P0056687 Olfr1305 protein_coding protein_coding MGP_AJ_T0054976.1 MGP_AJ_G0025742.1 mouse_genomes_project 2 59023354 59112585 + MGP_AJ_P0054976 Psmd14 protein_coding protein_coding MGP_AJ_T0054977.1 MGP_AJ_G0025742.1 mouse_genomes_project 2 59023402 59033144 + Psmd14 protein_coding processed_transcript MGP_AJ_T0054978.1 MGP_AJ_G0025742.1 mouse_genomes_project 2 59023420 59077175 + Psmd14 protein_coding processed_transcript MGP_AJ_T0054979.1 MGP_AJ_G0025742.1 mouse_genomes_project 2 59023440 59037982 + Psmd14 protein_coding processed_transcript MGP_AJ_T0054980.1 MGP_AJ_G0025742.1 mouse_genomes_project 2 59023451 59073647 + Psmd14 protein_coding processed_transcript MGP_AJ_T0054981.1 MGP_AJ_G0025742.1 mouse_genomes_project 2 59027483 59063331 + Psmd14 protein_coding processed_transcript MGP_AJ_T0054982.1 MGP_AJ_G0025742.1 mouse_genomes_project 2 59077652 59112262 + Psmd14 protein_coding processed_transcript MGP_AJ_T0054983.1 MGP_AJ_G0025742.1 mouse_genomes_project 2 59088844 59112283 + Psmd14 protein_coding processed_transcript MGP_AJ_T0052709.1 MGP_AJ_G0025346.1 mouse_genomes_project 2 13421609 13817319 + MGP_AJ_P0052709 Plxdc2 protein_coding unknown_likely_coding MGP_AJ_T0052710.1 MGP_AJ_G0025346.1 mouse_genomes_project 2 13422422 13817701 + MGP_AJ_P0052710 Plxdc2 protein_coding protein_coding MGP_AJ_T0052711.1 MGP_AJ_G0025346.1 mouse_genomes_project 2 13422652 13817869 + MGP_AJ_P0052711 Plxdc2 protein_coding protein_coding MGP_AJ_T0052712.1 MGP_AJ_G0025346.1 mouse_genomes_project 2 13700065 13817702 + Plxdc2 protein_coding processed_transcript MGP_AJ_T0055633.1 MGP_AJ_G0025872.1 mouse_genomes_project 2 81718906 81816192 - MGP_AJ_P0055633 Calcrl protein_coding protein_coding MGP_AJ_T0055634.1 MGP_AJ_G0025872.1 mouse_genomes_project 2 81718939 81763970 - MGP_AJ_P0055634 Calcrl protein_coding protein_coding MGP_AJ_T0055635.1 MGP_AJ_G0025872.1 mouse_genomes_project 2 81763906 81816047 - Calcrl protein_coding processed_transcript MGP_AJ_T0053210.1 MGP_AJ_G0025431.1 mouse_genomes_project 2 22545107 22549343 + MGP_AJ_P0053210 Edf1 protein_coding protein_coding MGP_AJ_T0053211.1 MGP_AJ_G0025431.1 mouse_genomes_project 2 22545131 22548622 + Edf1 protein_coding processed_transcript MGP_AJ_T0053212.1 MGP_AJ_G0025431.1 mouse_genomes_project 2 22545157 22548525 + Edf1 protein_coding processed_transcript MGP_AJ_T0053213.1 MGP_AJ_G0025431.1 mouse_genomes_project 2 22545399 22549122 + Edf1 protein_coding processed_transcript MGP_AJ_T0053214.1 MGP_AJ_G0025431.1 mouse_genomes_project 2 22547845 22549343 + Edf1 protein_coding processed_transcript MGP_AJ_T0007138.1 MGP_AJ_G0005853.1 mouse_genomes_project 2 4702350 4761144 - Gm13211 lincRNA lincRNA MGP_AJ_T0010417.1 MGP_AJ_G0008539.1 mouse_genomes_project 2 65053348 65053446 + Mir6335 miRNA miRNA MGP_AJ_T0013571.1 MGP_AJ_G0011666.1 mouse_genomes_project 2 59278424 59278743 - processed_pseudogene processed_pseudogene MGP_AJ_T0010445.1 MGP_AJ_G0008567.1 mouse_genomes_project 2 113406617 113406706 + Mir1951 miRNA miRNA MGP_AJ_T0054245.1 MGP_AJ_G0025603.1 mouse_genomes_project 2 30033723 30082799 + MGP_AJ_P0054245 Fam129b protein_coding protein_coding MGP_AJ_T0054246.1 MGP_AJ_G0025603.1 mouse_genomes_project 2 30053268 30067506 + MGP_AJ_P0054246 Fam129b protein_coding protein_coding MGP_AJ_T0054247.1 MGP_AJ_G0025603.1 mouse_genomes_project 2 30068455 30070135 + Fam129b protein_coding retained_intron MGP_AJ_T0054248.1 MGP_AJ_G0025603.1 mouse_genomes_project 2 30072258 30078572 + Fam129b protein_coding processed_transcript MGP_AJ_T0054249.1 MGP_AJ_G0025603.1 mouse_genomes_project 2 30076188 30079654 + Fam129b protein_coding processed_transcript MGP_AJ_T0054250.1 MGP_AJ_G0025603.1 mouse_genomes_project 2 30079188 30081186 + Fam129b protein_coding processed_transcript MGP_AJ_T0055984.1 MGP_AJ_G0026091.1 mouse_genomes_project 2 88279972 88340185 + MGP_AJ_P0055984 Nup160 protein_coding protein_coding MGP_AJ_T0055985.1 MGP_AJ_G0026091.1 mouse_genomes_project 2 88287954 88295127 + Nup160 protein_coding processed_transcript MGP_AJ_T0055986.1 MGP_AJ_G0026091.1 mouse_genomes_project 2 88291714 88296847 + Nup160 protein_coding processed_transcript MGP_AJ_T0055987.1 MGP_AJ_G0026091.1 mouse_genomes_project 2 88292703 88305059 + Nup160 protein_coding processed_transcript MGP_AJ_T0055988.1 MGP_AJ_G0026091.1 mouse_genomes_project 2 88302350 88304679 + Nup160 protein_coding processed_transcript MGP_AJ_T0055989.1 MGP_AJ_G0026091.1 mouse_genomes_project 2 88320622 88320975 + Nup160 protein_coding processed_transcript MGP_AJ_T0055990.1 MGP_AJ_G0026091.1 mouse_genomes_project 2 88336580 88339641 + Nup160 protein_coding processed_transcript MGP_AJ_T0052746.1 MGP_AJ_G0025352.1 mouse_genomes_project 2 15249373 15279020 - MGP_AJ_P0052746 Dnajc1 protein_coding protein_coding MGP_AJ_T0052747.1 MGP_AJ_G0025352.1 mouse_genomes_project 2 15260052 15456979 - MGP_AJ_P0052747 Dnajc1 protein_coding protein_coding MGP_AJ_T0052748.1 MGP_AJ_G0025352.1 mouse_genomes_project 2 15262948 15276365 - Dnajc1 protein_coding processed_transcript MGP_AJ_T0052749.1 MGP_AJ_G0025352.1 mouse_genomes_project 2 15273211 15456998 - MGP_AJ_P0052749 Dnajc1 protein_coding protein_coding MGP_AJ_T0052750.1 MGP_AJ_G0025352.1 mouse_genomes_project 2 15276597 15456588 - MGP_AJ_P0052750 Dnajc1 protein_coding nonsense_mediated_decay MGP_AJ_T0052751.1 MGP_AJ_G0025352.1 mouse_genomes_project 2 15276597 15456810 - MGP_AJ_P0052751 Dnajc1 protein_coding nonsense_mediated_decay MGP_AJ_T0052752.1 MGP_AJ_G0025352.1 mouse_genomes_project 2 15276617 15456589 - MGP_AJ_P0052752 Dnajc1 protein_coding protein_coding MGP_AJ_T0052753.1 MGP_AJ_G0025352.1 mouse_genomes_project 2 15278993 15371763 - MGP_AJ_P0052753 Dnajc1 protein_coding nonsense_mediated_decay MGP_AJ_T0052754.1 MGP_AJ_G0025352.1 mouse_genomes_project 2 15371384 15375005 - Dnajc1 protein_coding retained_intron MGP_AJ_T0052755.1 MGP_AJ_G0025352.1 mouse_genomes_project 2 15373331 15456992 - Dnajc1 protein_coding processed_transcript MGP_AJ_T0052756.1 MGP_AJ_G0025352.1 mouse_genomes_project 2 15381538 15456998 - Dnajc1 protein_coding retained_intron MGP_AJ_T0052877.1 MGP_AJ_G0025373.1 mouse_genomes_project 2 19972150 20017425 + MGP_AJ_P0052877 Acbd5 protein_coding protein_coding MGP_AJ_T0052878.1 MGP_AJ_G0025373.1 mouse_genomes_project 2 19972183 20017425 + MGP_AJ_P0052878 Acbd5 protein_coding protein_coding MGP_AJ_T0052879.1 MGP_AJ_G0025373.1 mouse_genomes_project 2 19972217 19979511 + MGP_AJ_P0052879 Acbd5 protein_coding protein_coding MGP_AJ_T0052880.1 MGP_AJ_G0025373.1 mouse_genomes_project 2 19973050 20017423 + MGP_AJ_P0052880 Acbd5 protein_coding protein_coding MGP_AJ_T0052881.1 MGP_AJ_G0025373.1 mouse_genomes_project 2 19973054 20017425 + MGP_AJ_P0052881 Acbd5 protein_coding protein_coding MGP_AJ_T0052882.1 MGP_AJ_G0025373.1 mouse_genomes_project 2 19973309 19991516 + MGP_AJ_P0052882 Acbd5 protein_coding protein_coding MGP_AJ_T0007426.1 MGP_AJ_G0006086.1 mouse_genomes_project 2 169335663 169345695 - Gm14264 lincRNA lincRNA MGP_AJ_T0010391.1 MGP_AJ_G0008513.1 mouse_genomes_project 2 27070594 27070665 + Mir6997 miRNA miRNA MGP_AJ_T0004083.1 MGP_AJ_G0003616.1 mouse_genomes_project 2 127188373 127189838 - Gm14029 antisense antisense MGP_AJ_T0056433.1 MGP_AJ_G0026162.1 mouse_genomes_project 2 100708000 100726954 + MGP_AJ_P0056433 Apip protein_coding protein_coding MGP_AJ_T0056434.1 MGP_AJ_G0026162.1 mouse_genomes_project 2 100708020 100726941 + Apip protein_coding processed_transcript MGP_AJ_T0056435.1 MGP_AJ_G0026162.1 mouse_genomes_project 2 100717268 100726100 + Apip protein_coding processed_transcript MGP_AJ_T0056436.1 MGP_AJ_G0026162.1 mouse_genomes_project 2 100726145 100726948 + Apip protein_coding processed_transcript MGP_AJ_T0003885.1 MGP_AJ_G0003474.1 mouse_genomes_project 2 1106296 1115276 - 1700080N15Rik antisense antisense MGP_AJ_T0003886.1 MGP_AJ_G0003474.1 mouse_genomes_project 2 1106298 1115276 - 1700080N15Rik antisense antisense MGP_AJ_T0003887.1 MGP_AJ_G0003474.1 mouse_genomes_project 2 1109712 1115274 - 1700080N15Rik antisense antisense MGP_AJ_T0058380.1 MGP_AJ_G0026647.1 mouse_genomes_project 2 151230344 151231654 - MGP_AJ_P0058380 Foxs1 protein_coding protein_coding MGP_AJ_T0055212.1 MGP_AJ_G0025789.1 mouse_genomes_project 2 67814059 67845582 + MGP_AJ_P0055212 Erich2 protein_coding protein_coding MGP_AJ_T0055213.1 MGP_AJ_G0025789.1 mouse_genomes_project 2 67814071 67845582 + MGP_AJ_P0055213 Erich2 protein_coding protein_coding MGP_AJ_T0055214.1 MGP_AJ_G0025789.1 mouse_genomes_project 2 67814700 67842032 + Erich2 protein_coding retained_intron MGP_AJ_T0055215.1 MGP_AJ_G0025789.1 mouse_genomes_project 2 67814700 67828725 + Erich2 protein_coding retained_intron MGP_AJ_T0055216.1 MGP_AJ_G0025789.1 mouse_genomes_project 2 67814737 67832432 + MGP_AJ_P0055216 Erich2 protein_coding protein_coding MGP_AJ_T0055829.1 MGP_AJ_G0025976.1 mouse_genomes_project 2 84928185 84929157 + MGP_AJ_P0055829 Olfr1123 protein_coding protein_coding MGP_AJ_T0007201.1 MGP_AJ_G0005900.1 mouse_genomes_project 2 43719052 43743029 - Gm13470 lincRNA lincRNA MGP_AJ_T0052905.1 MGP_AJ_G0025381.1 mouse_genomes_project 2 21130782 21137495 + MGP_AJ_P0052905 Il1f9 protein_coding unknown_likely_coding MGP_AJ_T0052356.1 MGP_AJ_G0025288.1 mouse_genomes_project 2 504456 504807 + MGP_AJ_P0052356 protein_coding protein_coding MGP_AJ_T0058492.1 MGP_AJ_G0026678.1 mouse_genomes_project 2 152654086 152672862 + MGP_AJ_P0058492 protein_coding protein_coding MGP_AJ_T0099756.1 MGP_AJ_G0037722.1 mouse_genomes_project 2 32112553 32112657 + Gm24905 snRNA snRNA MGP_AJ_T0007289.1 MGP_AJ_G0005972.1 mouse_genomes_project 2 101552426 101560658 + Gm13881 lincRNA lincRNA MGP_AJ_T0059646.1 MGP_AJ_G0026933.1 mouse_genomes_project 2 173154051 173165764 + MGP_AJ_P0059646 Nelfcd protein_coding protein_coding MGP_AJ_T0059647.1 MGP_AJ_G0026933.1 mouse_genomes_project 2 173154098 173165764 + MGP_AJ_P0059647 Nelfcd protein_coding protein_coding MGP_AJ_T0059648.1 MGP_AJ_G0026933.1 mouse_genomes_project 2 173154127 173160923 + Nelfcd protein_coding processed_transcript MGP_AJ_T0059649.1 MGP_AJ_G0026933.1 mouse_genomes_project 2 173161642 173163174 + Nelfcd protein_coding retained_intron MGP_AJ_T0059650.1 MGP_AJ_G0026933.1 mouse_genomes_project 2 173162940 173164210 + Nelfcd protein_coding retained_intron MGP_AJ_T0059651.1 MGP_AJ_G0026933.1 mouse_genomes_project 2 173164623 173165659 + Nelfcd protein_coding retained_intron MGP_AJ_T0011490.1 MGP_AJ_G0009612.1 mouse_genomes_project 2 20759711 20759886 + Gm26323 misc_RNA misc_RNA MGP_AJ_T0001048.1 MGP_AJ_G0000979.1 mouse_genomes_project 2 11790809 11793483 + TEC TEC MGP_AJ_T0017723.1 MGP_AJ_G0015367.1 mouse_genomes_project 2 7358091 7393972 - Gm13261 processed_transcript processed_transcript MGP_AJ_T0056745.1 MGP_AJ_G0026261.1 mouse_genomes_project 2 111751344 111755365 - MGP_AJ_P0056745 Gjd2 protein_coding protein_coding MGP_AJ_T0052776.1 MGP_AJ_G0025355.1 mouse_genomes_project 2 15748525 15753380 + Spag6 protein_coding processed_transcript MGP_AJ_T0052777.1 MGP_AJ_G0025355.1 mouse_genomes_project 2 15748545 15753533 + Spag6 protein_coding processed_transcript MGP_AJ_T0052778.1 MGP_AJ_G0025355.1 mouse_genomes_project 2 15753518 15804224 + MGP_AJ_P0052778 Spag6 protein_coding protein_coding MGP_AJ_T0052779.1 MGP_AJ_G0025355.1 mouse_genomes_project 2 15753579 15786192 + MGP_AJ_P0052779 Spag6 protein_coding protein_coding MGP_AJ_T0059019.1 MGP_AJ_G0026775.1 mouse_genomes_project 2 159434041 159439922 - MGP_AJ_P0059019 Emilin3 protein_coding protein_coding MGP_AJ_T0059020.1 MGP_AJ_G0026775.1 mouse_genomes_project 2 159434042 159439933 - MGP_AJ_P0059020 Emilin3 protein_coding protein_coding MGP_AJ_T0059906.1 MGP_AJ_G0026988.1 mouse_genomes_project 2 180232168 180235206 + MGP_AJ_P0059906 Lime1 protein_coding protein_coding MGP_AJ_T0059907.1 MGP_AJ_G0026988.1 mouse_genomes_project 2 180233325 180235719 + MGP_AJ_P0059907 Lime1 protein_coding protein_coding MGP_AJ_T0059908.1 MGP_AJ_G0026988.1 mouse_genomes_project 2 180233448 180235645 + Lime1 protein_coding retained_intron MGP_AJ_T0059909.1 MGP_AJ_G0026988.1 mouse_genomes_project 2 180233448 180235045 + Lime1 protein_coding retained_intron MGP_AJ_T0059910.1 MGP_AJ_G0026988.1 mouse_genomes_project 2 180233448 180235714 + MGP_AJ_P0059910 Lime1 protein_coding protein_coding MGP_AJ_T0059911.1 MGP_AJ_G0026988.1 mouse_genomes_project 2 180233962 180235719 + MGP_AJ_P0059911 Lime1 protein_coding protein_coding MGP_AJ_T0059912.1 MGP_AJ_G0026988.1 mouse_genomes_project 2 180234576 180235404 + Lime1 protein_coding retained_intron MGP_AJ_T0003940.1 MGP_AJ_G0003514.1 mouse_genomes_project 2 26941034 26942629 - 2600006K01Rik antisense antisense MGP_AJ_T0010483.1 MGP_AJ_G0008605.1 mouse_genomes_project 2 171569853 171569931 - Gm22773 miRNA miRNA MGP_AJ_T0053936.1 MGP_AJ_G0025558.1 mouse_genomes_project 2 28090097 28132961 + MGP_AJ_P0053936 Usp20 protein_coding protein_coding MGP_AJ_T0053937.1 MGP_AJ_G0025558.1 mouse_genomes_project 2 28090152 28092053 + Usp20 protein_coding retained_intron MGP_AJ_T0053938.1 MGP_AJ_G0025558.1 mouse_genomes_project 2 28090181 28116977 + MGP_AJ_P0053938 Usp20 protein_coding protein_coding MGP_AJ_T0053939.1 MGP_AJ_G0025558.1 mouse_genomes_project 2 28090215 28112328 + MGP_AJ_P0053939 Usp20 protein_coding protein_coding MGP_AJ_T0053940.1 MGP_AJ_G0025558.1 mouse_genomes_project 2 28090247 28109465 + MGP_AJ_P0053940 Usp20 protein_coding protein_coding MGP_AJ_T0053941.1 MGP_AJ_G0025558.1 mouse_genomes_project 2 28104395 28111997 + MGP_AJ_P0053941 Usp20 protein_coding protein_coding MGP_AJ_T0053942.1 MGP_AJ_G0025558.1 mouse_genomes_project 2 28104496 28112328 + MGP_AJ_P0053942 Usp20 protein_coding protein_coding MGP_AJ_T0053943.1 MGP_AJ_G0025558.1 mouse_genomes_project 2 28104782 28132957 + MGP_AJ_P0053943 Usp20 protein_coding protein_coding MGP_AJ_T0053944.1 MGP_AJ_G0025558.1 mouse_genomes_project 2 28104788 28115778 + Usp20 protein_coding processed_transcript MGP_AJ_T0053945.1 MGP_AJ_G0025558.1 mouse_genomes_project 2 28108228 28115807 + MGP_AJ_P0053945 Usp20 protein_coding protein_coding MGP_AJ_T0053946.1 MGP_AJ_G0025558.1 mouse_genomes_project 2 28111939 28113105 + Usp20 protein_coding retained_intron MGP_AJ_T0053947.1 MGP_AJ_G0025558.1 mouse_genomes_project 2 28129193 28130756 + Usp20 protein_coding retained_intron MGP_AJ_T0101776.1 MGP_AJ_G0039697.1 mouse_genomes_project 2 158503170 158503618 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0057241.1 MGP_AJ_G0026353.1 mouse_genomes_project 2 119257078 119262348 - MGP_AJ_P0057241 Ell3 protein_coding protein_coding MGP_AJ_T0057242.1 MGP_AJ_G0026353.1 mouse_genomes_project 2 119257095 119260671 - MGP_AJ_P0057242 Ell3 protein_coding protein_coding MGP_AJ_T0057244.1 MGP_AJ_G0026353.1 mouse_genomes_project 2 119258048 119259221 - Ell3 protein_coding retained_intron MGP_AJ_T0056784.1 MGP_AJ_G0026268.1 mouse_genomes_project 2 114633165 114646654 + MGP_AJ_P0056784 Tmco5 protein_coding protein_coding MGP_AJ_T0056785.1 MGP_AJ_G0026268.1 mouse_genomes_project 2 114633168 114646610 + MGP_AJ_P0056785 Tmco5 protein_coding protein_coding MGP_AJ_T0056786.1 MGP_AJ_G0026268.1 mouse_genomes_project 2 114633182 114646967 + MGP_AJ_P0056786 Tmco5 protein_coding protein_coding MGP_AJ_T0056787.1 MGP_AJ_G0026268.1 mouse_genomes_project 2 114642681 114646967 + Tmco5 protein_coding processed_transcript MGP_AJ_T0054609.1 MGP_AJ_G0025686.1 mouse_genomes_project 2 36255388 36265794 + Arpc5l protein_coding processed_transcript MGP_AJ_T0054610.1 MGP_AJ_G0025686.1 mouse_genomes_project 2 36258116 36266345 + MGP_AJ_P0054610 Arpc5l protein_coding protein_coding MGP_AJ_T0054611.1 MGP_AJ_G0025686.1 mouse_genomes_project 2 36258181 36264367 + Arpc5l protein_coding processed_transcript MGP_AJ_T0054612.1 MGP_AJ_G0025686.1 mouse_genomes_project 2 36258197 36265861 + MGP_AJ_P0054612 Arpc5l protein_coding nonsense_mediated_decay MGP_AJ_T0054613.1 MGP_AJ_G0025686.1 mouse_genomes_project 2 36260058 36266345 + Arpc5l protein_coding processed_transcript MGP_AJ_T0010348.1 MGP_AJ_G0008470.1 mouse_genomes_project 2 7529070 7529143 + Mir466 miRNA miRNA MGP_AJ_T0007399.1 MGP_AJ_G0006064.1 mouse_genomes_project 2 165026398 165040293 + 5031425F14Rik lincRNA lincRNA MGP_AJ_T0004085.1 MGP_AJ_G0003618.1 mouse_genomes_project 2 127378810 127384662 + Il1bos antisense antisense MGP_AJ_T0004086.1 MGP_AJ_G0003618.1 mouse_genomes_project 2 127378815 127384647 + Il1bos antisense antisense MGP_AJ_T0004087.1 MGP_AJ_G0003618.1 mouse_genomes_project 2 127382042 127383991 + Il1bos antisense antisense MGP_AJ_T0010416.1 MGP_AJ_G0008538.1 mouse_genomes_project 2 64946495 64946555 + Mir7224 miRNA miRNA MGP_AJ_T0013724.1 MGP_AJ_G0011819.1 mouse_genomes_project 2 110130789 110131090 - processed_pseudogene processed_pseudogene MGP_AJ_T0058188.1 MGP_AJ_G0026584.1 mouse_genomes_project 2 146993175 146997030 - MGP_AJ_P0058188 Cst3 protein_coding protein_coding MGP_AJ_T0058189.1 MGP_AJ_G0026584.1 mouse_genomes_project 2 146993922 146996905 - Cst3 protein_coding processed_transcript MGP_AJ_T0058190.1 MGP_AJ_G0026584.1 mouse_genomes_project 2 146994298 146997146 - MGP_AJ_P0058190 Cst3 protein_coding protein_coding MGP_AJ_T0102501.1 MGP_AJ_G0040243.1 mouse_genomes_project 2 86328771 86330398 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0056507.1 MGP_AJ_G0026175.1 mouse_genomes_project 2 101724937 101755826 + MGP_AJ_P0056507 Cd59a protein_coding protein_coding MGP_AJ_T0056508.1 MGP_AJ_G0026175.1 mouse_genomes_project 2 101724937 101755831 + MGP_AJ_P0056508 Cd59a protein_coding protein_coding MGP_AJ_T0056509.1 MGP_AJ_G0026175.1 mouse_genomes_project 2 101724976 101754731 + Cd59a protein_coding processed_transcript MGP_AJ_T0010399.1 MGP_AJ_G0008521.1 mouse_genomes_project 2 29803537 29803623 + Mir1954 miRNA miRNA MGP_AJ_T0059322.1 MGP_AJ_G0026859.1 mouse_genomes_project 2 163928068 163942015 - MGP_AJ_P0059322 Zfp334 protein_coding protein_coding MGP_AJ_T0003987.1 MGP_AJ_G0003551.1 mouse_genomes_project 2 62531677 62532597 + Gm13594 antisense antisense MGP_AJ_T0054241.1 MGP_AJ_G0025602.1 mouse_genomes_project 2 29944201 30004368 - MGP_AJ_P0054241 Stxbp1 protein_coding protein_coding MGP_AJ_T0054242.1 MGP_AJ_G0025602.1 mouse_genomes_project 2 29944206 29973787 - Stxbp1 protein_coding processed_transcript MGP_AJ_T0054243.1 MGP_AJ_G0025602.1 mouse_genomes_project 2 29944560 30004325 - MGP_AJ_P0054243 Stxbp1 protein_coding protein_coding MGP_AJ_T0054244.1 MGP_AJ_G0025602.1 mouse_genomes_project 2 29973110 29974193 - Stxbp1 protein_coding retained_intron MGP_AJ_T0053631.1 MGP_AJ_G0025515.1 mouse_genomes_project 2 26265750 26325184 - MGP_AJ_P0053631 Ntng2 protein_coding nonsense_mediated_decay MGP_AJ_T0053632.1 MGP_AJ_G0025515.1 mouse_genomes_project 2 26266003 26325158 - MGP_AJ_P0053632 Ntng2 protein_coding protein_coding MGP_AJ_T0053633.1 MGP_AJ_G0025515.1 mouse_genomes_project 2 26266030 26325099 - MGP_AJ_P0053633 Ntng2 protein_coding protein_coding MGP_AJ_T0053634.1 MGP_AJ_G0025515.1 mouse_genomes_project 2 26266030 26325099 - MGP_AJ_P0053634 Ntng2 protein_coding protein_coding MGP_AJ_T0053635.1 MGP_AJ_G0025515.1 mouse_genomes_project 2 26266030 26325099 - MGP_AJ_P0053635 Ntng2 protein_coding protein_coding MGP_AJ_T0053636.1 MGP_AJ_G0025515.1 mouse_genomes_project 2 26273458 26279015 - Ntng2 protein_coding processed_transcript MGP_AJ_T0053637.1 MGP_AJ_G0025515.1 mouse_genomes_project 2 26273631 26279913 - Ntng2 protein_coding processed_transcript MGP_AJ_T0053638.1 MGP_AJ_G0025515.1 mouse_genomes_project 2 26275552 26279015 - Ntng2 protein_coding processed_transcript MGP_AJ_T0053639.1 MGP_AJ_G0025515.1 mouse_genomes_project 2 26275666 26279913 - Ntng2 protein_coding processed_transcript MGP_AJ_T0053640.1 MGP_AJ_G0025515.1 mouse_genomes_project 2 26278812 26330064 - MGP_AJ_P0053640 Ntng2 protein_coding protein_coding MGP_AJ_T0053641.1 MGP_AJ_G0025515.1 mouse_genomes_project 2 26305654 26325191 - Ntng2 protein_coding processed_transcript MGP_AJ_T0017906.1 MGP_AJ_G0015463.1 mouse_genomes_project 2 158472415 158507603 + 4933416E03Rik processed_transcript processed_transcript MGP_AJ_T0001035.1 MGP_AJ_G0000966.1 mouse_genomes_project 2 10089420 10092656 + TEC TEC MGP_AJ_T0053047.1 MGP_AJ_G0025402.1 mouse_genomes_project 2 22184202 22187700 + MGP_AJ_P0053047 Fam166a protein_coding protein_coding MGP_AJ_T0053048.1 MGP_AJ_G0025402.1 mouse_genomes_project 2 22186815 22196875 + Fam166a protein_coding processed_transcript MGP_AJ_T0101047.1 MGP_AJ_G0039013.1 mouse_genomes_project 2 82791086 82791230 + Gm23716 snoRNA snoRNA MGP_AJ_T0054965.1 MGP_AJ_G0025741.1 mouse_genomes_project 2 58890158 58966074 + MGP_AJ_P0054965 Tank protein_coding protein_coding MGP_AJ_T0054966.1 MGP_AJ_G0025741.1 mouse_genomes_project 2 58890159 58966074 + MGP_AJ_P0054966 Tank protein_coding protein_coding MGP_AJ_T0054967.1 MGP_AJ_G0025741.1 mouse_genomes_project 2 58890184 58965993 + Tank protein_coding processed_transcript MGP_AJ_T0054968.1 MGP_AJ_G0025741.1 mouse_genomes_project 2 58890184 58955810 + Tank protein_coding processed_transcript MGP_AJ_T0054969.1 MGP_AJ_G0025741.1 mouse_genomes_project 2 58904600 58966074 + MGP_AJ_P0054969 Tank protein_coding protein_coding MGP_AJ_T0054970.1 MGP_AJ_G0025741.1 mouse_genomes_project 2 58904620 58966074 + MGP_AJ_P0054970 Tank protein_coding protein_coding MGP_AJ_T0054971.1 MGP_AJ_G0025741.1 mouse_genomes_project 2 58904659 58963702 + MGP_AJ_P0054971 Tank protein_coding protein_coding MGP_AJ_T0054972.1 MGP_AJ_G0025741.1 mouse_genomes_project 2 58904687 58927345 + Tank protein_coding processed_transcript MGP_AJ_T0054973.1 MGP_AJ_G0025741.1 mouse_genomes_project 2 58904688 58965993 + Tank protein_coding processed_transcript MGP_AJ_T0054974.1 MGP_AJ_G0025741.1 mouse_genomes_project 2 58939637 58958093 + Tank protein_coding processed_transcript MGP_AJ_T0054975.1 MGP_AJ_G0025741.1 mouse_genomes_project 2 58955733 58961880 + Tank protein_coding processed_transcript MGP_AJ_T0007324.1 MGP_AJ_G0006000.1 mouse_genomes_project 2 122072132 122078516 - 4930517E11Rik lincRNA lincRNA MGP_AJ_T0010339.1 MGP_AJ_G0008461.1 mouse_genomes_project 2 7491935 7492029 + Mir466f-2 miRNA miRNA MGP_AJ_T0013495.1 MGP_AJ_G0011590.1 mouse_genomes_project 2 34245449 34245858 + processed_pseudogene processed_pseudogene MGP_AJ_T0056503.1 MGP_AJ_G0026172.1 mouse_genomes_project 2 101710732 101713447 + MGP_AJ_P0056503 Gm10912 protein_coding protein_coding MGP_AJ_T0059722.1 MGP_AJ_G0026954.1 mouse_genomes_project 2 179006789 179012600 + MGP_AJ_P0059722 Adrm1 protein_coding protein_coding MGP_AJ_T0059723.1 MGP_AJ_G0026954.1 mouse_genomes_project 2 179006899 179007743 + Adrm1 protein_coding retained_intron MGP_AJ_T0059724.1 MGP_AJ_G0026954.1 mouse_genomes_project 2 179006910 179012598 + Adrm1 protein_coding retained_intron MGP_AJ_T0059725.1 MGP_AJ_G0026954.1 mouse_genomes_project 2 179006910 179008585 + Adrm1 protein_coding retained_intron MGP_AJ_T0059726.1 MGP_AJ_G0026954.1 mouse_genomes_project 2 179006918 179012449 + Adrm1 protein_coding retained_intron MGP_AJ_T0059727.1 MGP_AJ_G0026954.1 mouse_genomes_project 2 179006963 179012600 + Adrm1 protein_coding processed_transcript MGP_AJ_T0059728.1 MGP_AJ_G0026954.1 mouse_genomes_project 2 179007457 179012598 + Adrm1 protein_coding retained_intron MGP_AJ_T0059729.1 MGP_AJ_G0026954.1 mouse_genomes_project 2 179008270 179012601 + MGP_AJ_P0059729 Adrm1 protein_coding unknown_likely_coding MGP_AJ_T0059730.1 MGP_AJ_G0026954.1 mouse_genomes_project 2 179011668 179012596 + Adrm1 protein_coding retained_intron MGP_AJ_T0052713.1 MGP_AJ_G0025347.1 mouse_genomes_project 2 14378752 14496515 - MGP_AJ_P0052713 protein_coding unknown_likely_coding MGP_AJ_T0052714.1 MGP_AJ_G0025347.1 mouse_genomes_project 2 14379090 14759456 - MGP_AJ_P0052714 protein_coding protein_coding MGP_AJ_T0052715.1 MGP_AJ_G0025347.1 mouse_genomes_project 2 14379235 14496909 - MGP_AJ_P0052715 protein_coding protein_coding MGP_AJ_T0052716.1 MGP_AJ_G0025347.1 mouse_genomes_project 2 14383875 14395378 - protein_coding processed_transcript MGP_AJ_T0052717.1 MGP_AJ_G0025347.1 mouse_genomes_project 2 14385936 14562731 - MGP_AJ_P0052717 protein_coding protein_coding MGP_AJ_T0052718.1 MGP_AJ_G0025347.1 mouse_genomes_project 2 14409118 14423719 - protein_coding processed_transcript MGP_AJ_T0052719.1 MGP_AJ_G0025347.1 mouse_genomes_project 2 14410732 14423762 - protein_coding processed_transcript MGP_AJ_T0052720.1 MGP_AJ_G0025347.1 mouse_genomes_project 2 14410989 14423788 - MGP_AJ_P0052720 protein_coding protein_coding MGP_AJ_T0052721.1 MGP_AJ_G0025347.1 mouse_genomes_project 2 14413709 14423749 - protein_coding processed_transcript MGP_AJ_T0052722.1 MGP_AJ_G0025347.1 mouse_genomes_project 2 14425682 14498764 - MGP_AJ_P0052722 protein_coding protein_coding MGP_AJ_T0052723.1 MGP_AJ_G0025347.1 mouse_genomes_project 2 14425685 14498766 - MGP_AJ_P0052723 protein_coding protein_coding MGP_AJ_T0052724.1 MGP_AJ_G0025347.1 mouse_genomes_project 2 14430637 14496598 - MGP_AJ_P0052724 protein_coding protein_coding MGP_AJ_T0052725.1 MGP_AJ_G0025347.1 mouse_genomes_project 2 14468215 14560766 - protein_coding processed_transcript MGP_AJ_T0052726.1 MGP_AJ_G0025347.1 mouse_genomes_project 2 14755798 14759877 - protein_coding processed_transcript MGP_AJ_T0007366.1 MGP_AJ_G0006035.1 mouse_genomes_project 2 150110513 150113555 + Gm14155 lincRNA lincRNA MGP_AJ_T0010440.1 MGP_AJ_G0008562.1 mouse_genomes_project 2 101474657 101474753 - Gm22761 miRNA miRNA MGP_AJ_T0054984.1 MGP_AJ_G0025743.1 mouse_genomes_project 2 59115138 59116763 + Tbr1 protein_coding processed_transcript MGP_AJ_T0054985.1 MGP_AJ_G0025743.1 mouse_genomes_project 2 59116657 59126318 + MGP_AJ_P0054985 Tbr1 protein_coding protein_coding MGP_AJ_T0054986.1 MGP_AJ_G0025743.1 mouse_genomes_project 2 59118466 59124735 + MGP_AJ_P0054986 Tbr1 protein_coding protein_coding MGP_AJ_T0054987.1 MGP_AJ_G0025743.1 mouse_genomes_project 2 59118477 59124005 + Tbr1 protein_coding processed_transcript MGP_AJ_T0059463.1 MGP_AJ_G0026886.1 mouse_genomes_project 2 166556747 166599835 + Ptpn1 protein_coding processed_transcript MGP_AJ_T0059464.1 MGP_AJ_G0026886.1 mouse_genomes_project 2 166557017 166604483 + MGP_AJ_P0059464 Ptpn1 protein_coding protein_coding MGP_AJ_T0059465.1 MGP_AJ_G0026886.1 mouse_genomes_project 2 166557062 166592884 + Ptpn1 protein_coding processed_transcript MGP_AJ_T0059466.1 MGP_AJ_G0026886.1 mouse_genomes_project 2 166557062 166604483 + Ptpn1 protein_coding processed_transcript MGP_AJ_T0059467.1 MGP_AJ_G0026886.1 mouse_genomes_project 2 166557085 166588786 + Ptpn1 protein_coding processed_transcript MGP_AJ_T0059468.1 MGP_AJ_G0026886.1 mouse_genomes_project 2 166557085 166592832 + Ptpn1 protein_coding processed_transcript MGP_AJ_T0059469.1 MGP_AJ_G0026886.1 mouse_genomes_project 2 166575740 166590166 + Ptpn1 protein_coding processed_transcript MGP_AJ_T0003964.1 MGP_AJ_G0003534.1 mouse_genomes_project 2 35506971 35508956 + Gm13556 antisense antisense MGP_AJ_T0017751.1 MGP_AJ_G0015383.1 mouse_genomes_project 2 26814077 26816409 - processed_transcript processed_transcript MGP_AJ_T0102511.1 MGP_AJ_G0040253.1 mouse_genomes_project 2 107129591 107151558 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0056541.1 MGP_AJ_G0026184.1 mouse_genomes_project 2 102497048 102516856 - MGP_AJ_P0056541 Prrg4 protein_coding protein_coding MGP_AJ_T0056542.1 MGP_AJ_G0026184.1 mouse_genomes_project 2 102506235 102516473 - MGP_AJ_P0056542 Prrg4 protein_coding protein_coding MGP_AJ_T0004143.1 MGP_AJ_G0003662.1 mouse_genomes_project 2 156586846 156609392 - 2010009K17Rik antisense antisense MGP_AJ_T0011511.1 MGP_AJ_G0009633.1 mouse_genomes_project 2 114718906 114719219 + Gm24914 misc_RNA misc_RNA MGP_AJ_T0007128.1 MGP_AJ_G0005845.1 mouse_genomes_project 2 886660 889978 - Gm13191 lincRNA lincRNA MGP_AJ_T0058186.1 MGP_AJ_G0026583.1 mouse_genomes_project 2 146965928 146970283 - MGP_AJ_P0058186 9230104L09Rik protein_coding protein_coding MGP_AJ_T0058187.1 MGP_AJ_G0026583.1 mouse_genomes_project 2 146966121 146985128 - 9230104L09Rik protein_coding processed_transcript MGP_AJ_T0001102.1 MGP_AJ_G0001030.1 mouse_genomes_project 2 154555723 154557405 - TEC TEC MGP_AJ_T0013515.1 MGP_AJ_G0011610.1 mouse_genomes_project 2 38211392 38212356 + processed_pseudogene processed_pseudogene MGP_AJ_T0101073.1 MGP_AJ_G0039039.1 mouse_genomes_project 2 142339300 142339538 - Snord17 snoRNA snoRNA MGP_AJ_T0052564.1 MGP_AJ_G0025323.1 mouse_genomes_project 2 8678379 8731658 + MGP_AJ_P0052564 Il2ra protein_coding protein_coding MGP_AJ_T0052565.1 MGP_AJ_G0025323.1 mouse_genomes_project 2 8678421 8684321 + MGP_AJ_P0052565 Il2ra protein_coding protein_coding MGP_AJ_T0052567.1 MGP_AJ_G0025323.1 mouse_genomes_project 2 8718303 8718805 + Il2ra protein_coding retained_intron MGP_AJ_T0010375.1 MGP_AJ_G0008497.1 mouse_genomes_project 2 16917801 16917877 + Gm44457 miRNA miRNA MGP_AJ_T0003933.1 MGP_AJ_G0003508.1 mouse_genomes_project 2 24061731 24065300 + Gm13398 antisense antisense MGP_AJ_T0058474.1 MGP_AJ_G0026670.1 mouse_genomes_project 2 152296826 152322850 + MGP_AJ_P0058474 Bpifa6 protein_coding protein_coding MGP_AJ_T0101028.1 MGP_AJ_G0038994.1 mouse_genomes_project 2 34614877 34614988 - Snord90 snoRNA snoRNA MGP_AJ_T0007395.1 MGP_AJ_G0006061.1 mouse_genomes_project 2 164776670 164778068 - Gm11467 lincRNA lincRNA MGP_AJ_T0010353.1 MGP_AJ_G0008475.1 mouse_genomes_project 2 7531598 7531695 + Mir669a-2 miRNA miRNA MGP_AJ_T0056267.1 MGP_AJ_G0026129.1 mouse_genomes_project 2 90037409 90067771 - MGP_AJ_P0056267 Cry2 protein_coding protein_coding MGP_AJ_T0056268.1 MGP_AJ_G0026129.1 mouse_genomes_project 2 90045060 90067764 - MGP_AJ_P0056268 Cry2 protein_coding protein_coding MGP_AJ_T0056269.1 MGP_AJ_G0026129.1 mouse_genomes_project 2 90058952 90067764 - Cry2 protein_coding processed_transcript MGP_AJ_T0056270.1 MGP_AJ_G0026129.1 mouse_genomes_project 2 90060702 90066121 - Cry2 protein_coding processed_transcript MGP_AJ_T0056624.1 MGP_AJ_G0026201.1 mouse_genomes_project 2 107324884 107377558 + MGP_AJ_P0056624 Bdnf protein_coding protein_coding MGP_AJ_T0056625.1 MGP_AJ_G0026201.1 mouse_genomes_project 2 107326081 107377558 + MGP_AJ_P0056625 Bdnf protein_coding protein_coding MGP_AJ_T0056626.1 MGP_AJ_G0026201.1 mouse_genomes_project 2 107326081 107377558 + MGP_AJ_P0056626 Bdnf protein_coding protein_coding MGP_AJ_T0056627.1 MGP_AJ_G0026201.1 mouse_genomes_project 2 107326081 107377558 + MGP_AJ_P0056627 Bdnf protein_coding protein_coding MGP_AJ_T0056628.1 MGP_AJ_G0026201.1 mouse_genomes_project 2 107327216 107377558 + MGP_AJ_P0056628 Bdnf protein_coding protein_coding MGP_AJ_T0056629.1 MGP_AJ_G0026201.1 mouse_genomes_project 2 107342622 107377558 + MGP_AJ_P0056629 Bdnf protein_coding protein_coding MGP_AJ_T0056630.1 MGP_AJ_G0026201.1 mouse_genomes_project 2 107343270 107377558 + MGP_AJ_P0056630 Bdnf protein_coding protein_coding MGP_AJ_T0056631.1 MGP_AJ_G0026201.1 mouse_genomes_project 2 107343806 107377558 + MGP_AJ_P0056631 Bdnf protein_coding protein_coding MGP_AJ_T0056632.1 MGP_AJ_G0026201.1 mouse_genomes_project 2 107344652 107377558 + MGP_AJ_P0056632 Bdnf protein_coding protein_coding MGP_AJ_T0056633.1 MGP_AJ_G0026201.1 mouse_genomes_project 2 107344712 107377558 + MGP_AJ_P0056633 Bdnf protein_coding protein_coding MGP_AJ_T0056634.1 MGP_AJ_G0026201.1 mouse_genomes_project 2 107359920 107377558 + MGP_AJ_P0056634 Bdnf protein_coding protein_coding MGP_AJ_T0099802.1 MGP_AJ_G0037768.1 mouse_genomes_project 2 179543537 179543644 + Gm22502 snRNA snRNA MGP_AJ_T0057878.1 MGP_AJ_G0026505.1 mouse_genomes_project 2 130309027 130348684 + MGP_AJ_P0057878 Cds2 protein_coding protein_coding MGP_AJ_T0057879.1 MGP_AJ_G0026505.1 mouse_genomes_project 2 130309120 130349762 + MGP_AJ_P0057879 Cds2 protein_coding nonsense_mediated_decay MGP_AJ_T0057880.1 MGP_AJ_G0026505.1 mouse_genomes_project 2 130309323 130363127 + MGP_AJ_P0057880 Cds2 protein_coding protein_coding MGP_AJ_T0057881.1 MGP_AJ_G0026505.1 mouse_genomes_project 2 130334560 130348064 + MGP_AJ_P0057881 Cds2 protein_coding protein_coding MGP_AJ_T0057882.1 MGP_AJ_G0026505.1 mouse_genomes_project 2 130353786 130357819 + MGP_AJ_P0057882 Cds2 protein_coding protein_coding MGP_AJ_T0057022.1 MGP_AJ_G0026325.1 mouse_genomes_project 2 118128136 118167111 - MGP_AJ_P0057022 Vps39 protein_coding protein_coding MGP_AJ_T0057023.1 MGP_AJ_G0026325.1 mouse_genomes_project 2 118128136 118167099 - MGP_AJ_P0057023 Vps39 protein_coding protein_coding MGP_AJ_T0057024.1 MGP_AJ_G0026325.1 mouse_genomes_project 2 118128486 118167095 - Vps39 protein_coding processed_transcript MGP_AJ_T0057025.1 MGP_AJ_G0026325.1 mouse_genomes_project 2 118129702 118131258 - Vps39 protein_coding retained_intron MGP_AJ_T0057026.1 MGP_AJ_G0026325.1 mouse_genomes_project 2 118131521 118135166 - Vps39 protein_coding retained_intron MGP_AJ_T0057027.1 MGP_AJ_G0026325.1 mouse_genomes_project 2 118133530 118167083 - Vps39 protein_coding retained_intron MGP_AJ_T0057028.1 MGP_AJ_G0026325.1 mouse_genomes_project 2 118137543 118147543 - Vps39 protein_coding retained_intron MGP_AJ_T0057029.1 MGP_AJ_G0026325.1 mouse_genomes_project 2 118152513 118158199 - Vps39 protein_coding processed_transcript MGP_AJ_T0057030.1 MGP_AJ_G0026325.1 mouse_genomes_project 2 118157245 118167095 - Vps39 protein_coding processed_transcript MGP_AJ_T0057031.1 MGP_AJ_G0026325.1 mouse_genomes_project 2 118162444 118167099 - Vps39 protein_coding processed_transcript MGP_AJ_T0058026.1 MGP_AJ_G0026539.1 mouse_genomes_project 2 141123556 141126791 + MGP_AJ_P0058026 Otor protein_coding protein_coding MGP_AJ_T0013475.1 MGP_AJ_G0011570.1 mouse_genomes_project 2 25850448 25850668 - processed_pseudogene processed_pseudogene MGP_AJ_T0099757.1 MGP_AJ_G0037723.1 mouse_genomes_project 2 34487015 34487122 + Gm22306 snRNA snRNA MGP_AJ_T0055890.1 MGP_AJ_G0026024.1 mouse_genomes_project 2 86224382 86225303 + MGP_AJ_P0055890 Olfr1189 protein_coding protein_coding MGP_AJ_T0013678.1 MGP_AJ_G0011773.1 mouse_genomes_project 2 96184664 96184989 + processed_pseudogene processed_pseudogene MGP_AJ_T0010355.1 MGP_AJ_G0008477.1 mouse_genomes_project 2 7533101 7533204 + Gm22925 miRNA miRNA MGP_AJ_T0010446.1 MGP_AJ_G0008568.1 mouse_genomes_project 2 114946763 114946863 + Mir674 miRNA miRNA MGP_AJ_T0004118.1 MGP_AJ_G0003639.1 mouse_genomes_project 2 143634926 143639257 - Gm14092 antisense antisense MGP_AJ_T0017825.1 MGP_AJ_G0015429.1 mouse_genomes_project 2 107558265 107569240 - Platr8 processed_transcript processed_transcript MGP_AJ_T0057414.1 MGP_AJ_G0026398.1 mouse_genomes_project 2 123813719 123814898 + Galk2 protein_coding processed_transcript MGP_AJ_T0057415.1 MGP_AJ_G0026398.1 mouse_genomes_project 2 123813744 123937938 + MGP_AJ_P0057415 Galk2 protein_coding protein_coding MGP_AJ_T0057416.1 MGP_AJ_G0026398.1 mouse_genomes_project 2 123813758 123845723 + MGP_AJ_P0057416 Galk2 protein_coding protein_coding MGP_AJ_T0057417.1 MGP_AJ_G0026398.1 mouse_genomes_project 2 123820664 123937226 + MGP_AJ_P0057417 Galk2 protein_coding protein_coding MGP_AJ_T0057418.1 MGP_AJ_G0026398.1 mouse_genomes_project 2 123820664 123882119 + MGP_AJ_P0057418 Galk2 protein_coding protein_coding MGP_AJ_T0057419.1 MGP_AJ_G0026398.1 mouse_genomes_project 2 123820800 123863922 + Galk2 protein_coding processed_transcript MGP_AJ_T0057420.1 MGP_AJ_G0026398.1 mouse_genomes_project 2 123820807 123848946 + MGP_AJ_P0057420 Galk2 protein_coding protein_coding MGP_AJ_T0057421.1 MGP_AJ_G0026398.1 mouse_genomes_project 2 123820811 123882175 + MGP_AJ_P0057421 Galk2 protein_coding nonsense_mediated_decay MGP_AJ_T0057422.1 MGP_AJ_G0026398.1 mouse_genomes_project 2 123820825 123899829 + Galk2 protein_coding retained_intron MGP_AJ_T0053383.1 MGP_AJ_G0025467.1 mouse_genomes_project 2 23476100 23522041 - MGP_AJ_P0053383 Notch1 protein_coding protein_coding MGP_AJ_T0053384.1 MGP_AJ_G0025467.1 mouse_genomes_project 2 23480416 23480946 - Notch1 protein_coding processed_transcript MGP_AJ_T0053385.1 MGP_AJ_G0025467.1 mouse_genomes_project 2 23483670 23485813 - Notch1 protein_coding processed_transcript MGP_AJ_T0053386.1 MGP_AJ_G0025467.1 mouse_genomes_project 2 23483670 23484854 - Notch1 protein_coding processed_transcript MGP_AJ_T0053387.1 MGP_AJ_G0025467.1 mouse_genomes_project 2 23483670 23484994 - Notch1 protein_coding processed_transcript MGP_AJ_T0053388.1 MGP_AJ_G0025467.1 mouse_genomes_project 2 23483670 23484567 - Notch1 protein_coding processed_transcript MGP_AJ_T0053389.1 MGP_AJ_G0025467.1 mouse_genomes_project 2 23483670 23484363 - Notch1 protein_coding processed_transcript MGP_AJ_T0053390.1 MGP_AJ_G0025467.1 mouse_genomes_project 2 23486742 23487949 - Notch1 protein_coding processed_transcript MGP_AJ_T0053391.1 MGP_AJ_G0025467.1 mouse_genomes_project 2 23488024 23488698 - Notch1 protein_coding processed_transcript MGP_AJ_T0053392.1 MGP_AJ_G0025467.1 mouse_genomes_project 2 23489476 23534883 - MGP_AJ_P0053392 Notch1 protein_coding protein_coding MGP_AJ_T0053393.1 MGP_AJ_G0025467.1 mouse_genomes_project 2 23516371 23522043 - Notch1 protein_coding retained_intron MGP_AJ_T0013873.1 MGP_AJ_G0011968.1 mouse_genomes_project 2 166137119 166137396 - processed_pseudogene processed_pseudogene MGP_AJ_T0059259.1 MGP_AJ_G0026850.1 mouse_genomes_project 2 163480218 163489378 + MGP_AJ_P0059259 Mmp9 protein_coding protein_coding MGP_AJ_T0059260.1 MGP_AJ_G0026850.1 mouse_genomes_project 2 163488703 163496348 + MGP_AJ_P0059260 Mmp9 protein_coding protein_coding MGP_AJ_T0059261.1 MGP_AJ_G0026850.1 mouse_genomes_project 2 163491184 163491751 + Mmp9 protein_coding retained_intron MGP_AJ_T0059262.1 MGP_AJ_G0026850.1 mouse_genomes_project 2 163494883 163496348 + Mmp9 protein_coding processed_transcript MGP_AJ_T0003941.1 MGP_AJ_G0003515.1 mouse_genomes_project 2 27316324 27317754 - 1700084E18Rik antisense antisense MGP_AJ_T0003942.1 MGP_AJ_G0003515.1 mouse_genomes_project 2 27317022 27317754 - 1700084E18Rik antisense pseudogene MGP_AJ_T0099786.1 MGP_AJ_G0037752.1 mouse_genomes_project 2 127323222 127323373 - Gm25703 snRNA snRNA MGP_AJ_T0058304.1 MGP_AJ_G0026617.1 mouse_genomes_project 2 150388546 150395333 + Srxn1 protein_coding processed_transcript MGP_AJ_T0058305.1 MGP_AJ_G0026617.1 mouse_genomes_project 2 150388546 150395222 + Srxn1 protein_coding processed_transcript MGP_AJ_T0058306.1 MGP_AJ_G0026617.1 mouse_genomes_project 2 150388554 150397387 + MGP_AJ_P0058306 Srxn1 protein_coding protein_coding MGP_AJ_T0059155.1 MGP_AJ_G0026817.1 mouse_genomes_project 2 162951975 162970961 - MGP_AJ_P0059155 Sdc4 protein_coding protein_coding MGP_AJ_T0059156.1 MGP_AJ_G0026817.1 mouse_genomes_project 2 162953621 162971662 - Sdc4 protein_coding processed_transcript MGP_AJ_T0013445.1 MGP_AJ_G0011540.1 mouse_genomes_project 2 15613917 15613990 + processed_pseudogene processed_pseudogene MGP_AJ_T0058001.1 MGP_AJ_G0026535.1 mouse_genomes_project 2 138492789 140451088 + MGP_AJ_P0058001 protein_coding protein_coding MGP_AJ_T0058002.1 MGP_AJ_G0026535.1 mouse_genomes_project 2 138492836 140451088 + MGP_AJ_P0058002 protein_coding protein_coding MGP_AJ_T0058003.1 MGP_AJ_G0026535.1 mouse_genomes_project 2 138492836 138795271 + MGP_AJ_P0058003 protein_coding protein_coding MGP_AJ_T0058004.1 MGP_AJ_G0026535.1 mouse_genomes_project 2 138492910 138520114 + MGP_AJ_P0058004 protein_coding protein_coding MGP_AJ_T0058005.1 MGP_AJ_G0026535.1 mouse_genomes_project 2 138492913 138899257 + protein_coding retained_intron MGP_AJ_T0058006.1 MGP_AJ_G0026535.1 mouse_genomes_project 2 138492915 138520117 + MGP_AJ_P0058006 protein_coding protein_coding MGP_AJ_T0058007.1 MGP_AJ_G0026535.1 mouse_genomes_project 2 138492915 140442520 + MGP_AJ_P0058007 protein_coding protein_coding MGP_AJ_T0058008.1 MGP_AJ_G0026535.1 mouse_genomes_project 2 138492922 138607811 + protein_coding processed_transcript MGP_AJ_T0058009.1 MGP_AJ_G0026535.1 mouse_genomes_project 2 138492936 138734712 + protein_coding processed_transcript MGP_AJ_T0058010.1 MGP_AJ_G0026535.1 mouse_genomes_project 2 138492940 138517658 + protein_coding processed_transcript MGP_AJ_T0058011.1 MGP_AJ_G0026535.1 mouse_genomes_project 2 138493075 138517658 + MGP_AJ_P0058011 protein_coding protein_coding MGP_AJ_T0058015.1 MGP_AJ_G0026535.1 mouse_genomes_project 2 139088167 139212004 + protein_coding processed_transcript MGP_AJ_T0058016.1 MGP_AJ_G0026535.1 mouse_genomes_project 2 139617534 140451088 + protein_coding processed_transcript MGP_AJ_T0058017.1 MGP_AJ_G0026535.1 mouse_genomes_project 2 140227450 140451086 + MGP_AJ_P0058017 protein_coding unknown_likely_coding MGP_AJ_T0058018.1 MGP_AJ_G0026535.1 mouse_genomes_project 2 140237384 140294327 + MGP_AJ_P0058018 protein_coding protein_coding MGP_AJ_T0057536.1 MGP_AJ_G0026425.1 mouse_genomes_project 2 125444446 125511491 - MGP_AJ_P0057536 Kcnip3 protein_coding protein_coding MGP_AJ_T0057537.1 MGP_AJ_G0026425.1 mouse_genomes_project 2 125444446 125511491 - MGP_AJ_P0057537 Kcnip3 protein_coding protein_coding MGP_AJ_T0057538.1 MGP_AJ_G0026425.1 mouse_genomes_project 2 125446076 125471981 - MGP_AJ_P0057538 Kcnip3 protein_coding protein_coding MGP_AJ_T0057539.1 MGP_AJ_G0026425.1 mouse_genomes_project 2 125446176 125512215 - Kcnip3 protein_coding processed_transcript MGP_AJ_T0057404.1 MGP_AJ_G0026395.1 mouse_genomes_project 2 123623629 123625321 + MGP_AJ_P0057404 Eid1 protein_coding protein_coding MGP_AJ_T0055608.1 MGP_AJ_G0025867.1 mouse_genomes_project 2 80381143 80444773 + MGP_AJ_P0055608 Fsip2 protein_coding protein_coding MGP_AJ_T0055609.1 MGP_AJ_G0025867.1 mouse_genomes_project 2 80387007 80402167 + MGP_AJ_P0055609 Fsip2 protein_coding nonsense_mediated_decay MGP_AJ_T0055610.1 MGP_AJ_G0025867.1 mouse_genomes_project 2 80416742 80444773 + MGP_AJ_P0055610 Fsip2 protein_coding nonsense_mediated_decay MGP_AJ_T0058798.1 MGP_AJ_G0026731.1 mouse_genomes_project 2 155026356 155047880 + MGP_AJ_P0058798 Aar2 protein_coding protein_coding MGP_AJ_T0058799.1 MGP_AJ_G0026731.1 mouse_genomes_project 2 155026368 155048696 + MGP_AJ_P0058799 Aar2 protein_coding protein_coding MGP_AJ_T0058800.1 MGP_AJ_G0026731.1 mouse_genomes_project 2 155026380 155029457 + Aar2 protein_coding processed_transcript MGP_AJ_T0058801.1 MGP_AJ_G0026731.1 mouse_genomes_project 2 155026382 155029838 + MGP_AJ_P0058801 Aar2 protein_coding protein_coding MGP_AJ_T0058802.1 MGP_AJ_G0026731.1 mouse_genomes_project 2 155026396 155029591 + MGP_AJ_P0058802 Aar2 protein_coding protein_coding MGP_AJ_T0059955.1 MGP_AJ_G0026995.1 mouse_genomes_project 2 180433361 180444062 - MGP_AJ_P0059955 Zfp512b protein_coding protein_coding MGP_AJ_T0059956.1 MGP_AJ_G0026995.1 mouse_genomes_project 2 180433363 180442184 - MGP_AJ_P0059956 Zfp512b protein_coding protein_coding MGP_AJ_T0059957.1 MGP_AJ_G0026995.1 mouse_genomes_project 2 180435847 180437661 - Zfp512b protein_coding retained_intron MGP_AJ_T0059958.1 MGP_AJ_G0026995.1 mouse_genomes_project 2 180436435 180437567 - MGP_AJ_P0059958 Zfp512b protein_coding protein_coding MGP_AJ_T0059959.1 MGP_AJ_G0026995.1 mouse_genomes_project 2 180436441 180437619 - MGP_AJ_P0059959 Zfp512b protein_coding protein_coding MGP_AJ_T0059960.1 MGP_AJ_G0026995.1 mouse_genomes_project 2 180437978 180438910 - Zfp512b protein_coding retained_intron MGP_AJ_T0059961.1 MGP_AJ_G0026995.1 mouse_genomes_project 2 180438374 180440004 - MGP_AJ_P0059961 Zfp512b protein_coding nonsense_mediated_decay MGP_AJ_T0059962.1 MGP_AJ_G0026995.1 mouse_genomes_project 2 180439330 180440551 - Zfp512b protein_coding processed_transcript MGP_AJ_T0059963.1 MGP_AJ_G0026995.1 mouse_genomes_project 2 180441287 180444017 - Zfp512b protein_coding processed_transcript MGP_AJ_T0059964.1 MGP_AJ_G0026995.1 mouse_genomes_project 2 180441786 180444062 - MGP_AJ_P0059964 Zfp512b protein_coding protein_coding MGP_AJ_T0098946.1 MGP_AJ_G0036924.1 mouse_genomes_project 2 3945003 3946231 - Gm10115 sense_intronic sense_intronic MGP_AJ_T0053238.1 MGP_AJ_G0025437.1 mouse_genomes_project 2 22609483 22611422 - MGP_AJ_P0053238 Tmem141 protein_coding protein_coding MGP_AJ_T0053239.1 MGP_AJ_G0025437.1 mouse_genomes_project 2 22609483 22611402 - MGP_AJ_P0053239 Tmem141 protein_coding protein_coding MGP_AJ_T0053240.1 MGP_AJ_G0025437.1 mouse_genomes_project 2 22609520 22611380 - Tmem141 protein_coding processed_transcript MGP_AJ_T0053241.1 MGP_AJ_G0025437.1 mouse_genomes_project 2 22609743 22611197 - Tmem141 protein_coding processed_transcript MGP_AJ_T0053242.1 MGP_AJ_G0025437.1 mouse_genomes_project 2 22610463 22611388 - Tmem141 protein_coding processed_transcript MGP_AJ_T0053243.1 MGP_AJ_G0025437.1 mouse_genomes_project 2 22610463 22611385 - Tmem141 protein_coding processed_transcript MGP_AJ_T0053244.1 MGP_AJ_G0025437.1 mouse_genomes_project 2 22610910 22611324 - Tmem141 protein_coding processed_transcript MGP_AJ_T0001060.1 MGP_AJ_G0000991.1 mouse_genomes_project 2 30157006 30160801 - TEC TEC MGP_AJ_T0007216.1 MGP_AJ_G0005913.1 mouse_genomes_project 2 57397955 57398679 + Gm13620 lincRNA lincRNA MGP_AJ_T0053476.1 MGP_AJ_G0025483.1 mouse_genomes_project 2 24033777 24040701 + MGP_AJ_P0053476 Cacfd1 protein_coding protein_coding MGP_AJ_T0053477.1 MGP_AJ_G0025483.1 mouse_genomes_project 2 24033777 24041276 + MGP_AJ_P0053477 Cacfd1 protein_coding protein_coding MGP_AJ_T0053478.1 MGP_AJ_G0025483.1 mouse_genomes_project 2 24033777 24045305 + MGP_AJ_P0053478 Cacfd1 protein_coding protein_coding MGP_AJ_T0053479.1 MGP_AJ_G0025483.1 mouse_genomes_project 2 24033777 24045305 + MGP_AJ_P0053479 Cacfd1 protein_coding protein_coding MGP_AJ_T0053480.1 MGP_AJ_G0025483.1 mouse_genomes_project 2 24033864 24042273 + Cacfd1 protein_coding processed_transcript MGP_AJ_T0053481.1 MGP_AJ_G0025483.1 mouse_genomes_project 2 24033933 24039755 + MGP_AJ_P0053481 Cacfd1 protein_coding protein_coding MGP_AJ_T0053482.1 MGP_AJ_G0025483.1 mouse_genomes_project 2 24034444 24044514 + MGP_AJ_P0053482 Cacfd1 protein_coding protein_coding MGP_AJ_T0053483.1 MGP_AJ_G0025483.1 mouse_genomes_project 2 24039434 24041287 + Cacfd1 protein_coding retained_intron MGP_AJ_T0059525.1 MGP_AJ_G0026898.1 mouse_genomes_project 2 168238560 168243627 - MGP_AJ_P0059525 Gm11011 protein_coding protein_coding MGP_AJ_T0056948.1 MGP_AJ_G0026312.1 mouse_genomes_project 2 117560329 117569145 - MGP_AJ_P0056948 Ltk protein_coding protein_coding MGP_AJ_T0056949.1 MGP_AJ_G0026312.1 mouse_genomes_project 2 117560331 117567453 - Ltk protein_coding retained_intron MGP_AJ_T0056950.1 MGP_AJ_G0026312.1 mouse_genomes_project 2 117560331 117569180 - MGP_AJ_P0056950 Ltk protein_coding protein_coding MGP_AJ_T0056951.1 MGP_AJ_G0026312.1 mouse_genomes_project 2 117560335 117569281 - MGP_AJ_P0056951 Ltk protein_coding protein_coding MGP_AJ_T0056952.1 MGP_AJ_G0026312.1 mouse_genomes_project 2 117560337 117567457 - MGP_AJ_P0056952 Ltk protein_coding protein_coding MGP_AJ_T0056953.1 MGP_AJ_G0026312.1 mouse_genomes_project 2 117560339 117567451 - Ltk protein_coding retained_intron MGP_AJ_T0013814.1 MGP_AJ_G0011909.1 mouse_genomes_project 2 147516048 147516767 + processed_pseudogene processed_pseudogene MGP_AJ_T0099794.1 MGP_AJ_G0037760.1 mouse_genomes_project 2 145997096 145997203 - Gm25516 snRNA snRNA MGP_AJ_T0013588.1 MGP_AJ_G0011683.1 mouse_genomes_project 2 67099531 67100042 - processed_pseudogene processed_pseudogene MGP_AJ_T0052791.1 MGP_AJ_G0025360.1 mouse_genomes_project 2 16478937 16480776 + MGP_AJ_P0052791 Ptf1a protein_coding protein_coding MGP_AJ_T0101084.1 MGP_AJ_G0039050.1 mouse_genomes_project 2 154109190 154109323 - Gm22334 snoRNA snoRNA MGP_AJ_T0057917.1 MGP_AJ_G0026514.1 mouse_genomes_project 2 130959038 131001189 - Fermt1 protein_coding retained_intron MGP_AJ_T0057918.1 MGP_AJ_G0026514.1 mouse_genomes_project 2 130959038 131001466 - MGP_AJ_P0057918 Fermt1 protein_coding protein_coding MGP_AJ_T0057919.1 MGP_AJ_G0026514.1 mouse_genomes_project 2 130991676 130997661 - Fermt1 protein_coding processed_transcript MGP_AJ_T0057920.1 MGP_AJ_G0026514.1 mouse_genomes_project 2 130994659 130997527 - Fermt1 protein_coding processed_transcript MGP_AJ_T0056379.1 MGP_AJ_G0026150.1 mouse_genomes_project 2 99223110 99230945 + MGP_AJ_P0056379 Rag2 protein_coding protein_coding MGP_AJ_T0056380.1 MGP_AJ_G0026150.1 mouse_genomes_project 2 99223138 99229470 + MGP_AJ_P0056380 Rag2 protein_coding protein_coding MGP_AJ_T0010333.1 MGP_AJ_G0008455.1 mouse_genomes_project 2 7490204 7490298 + Mir466f-1 miRNA miRNA MGP_AJ_T0055340.1 MGP_AJ_G0025810.1 mouse_genomes_project 2 70333597 70348776 - MGP_AJ_P0055340 Gm11084 protein_coding protein_coding MGP_AJ_T0052424.1 MGP_AJ_G0025300.1 mouse_genomes_project 2 2785841 2837820 - MGP_AJ_P0052424 Cdc123 protein_coding protein_coding MGP_AJ_T0052425.1 MGP_AJ_G0025300.1 mouse_genomes_project 2 2786212 2790209 - Cdc123 protein_coding processed_transcript MGP_AJ_T0052426.1 MGP_AJ_G0025300.1 mouse_genomes_project 2 2789971 2795983 - Cdc123 protein_coding retained_intron MGP_AJ_T0052427.1 MGP_AJ_G0025300.1 mouse_genomes_project 2 2796440 2802552 - Cdc123 protein_coding processed_transcript MGP_AJ_T0052428.1 MGP_AJ_G0025300.1 mouse_genomes_project 2 2796559 2825974 - Cdc123 protein_coding retained_intron MGP_AJ_T0052429.1 MGP_AJ_G0025300.1 mouse_genomes_project 2 2801284 2826469 - MGP_AJ_P0052429 Cdc123 protein_coding protein_coding MGP_AJ_T0052430.1 MGP_AJ_G0025300.1 mouse_genomes_project 2 2802447 2837597 - Cdc123 protein_coding retained_intron MGP_AJ_T0052431.1 MGP_AJ_G0025300.1 mouse_genomes_project 2 2813229 2815224 - Cdc123 protein_coding retained_intron MGP_AJ_T0052432.1 MGP_AJ_G0025300.1 mouse_genomes_project 2 2814920 2837507 - Cdc123 protein_coding processed_transcript MGP_AJ_T0059689.1 MGP_AJ_G0026947.1 mouse_genomes_project 2 178745313 178812210 - MGP_AJ_P0059689 Taf4 protein_coding protein_coding MGP_AJ_T0059690.1 MGP_AJ_G0026947.1 mouse_genomes_project 2 178746600 178811068 - MGP_AJ_P0059690 Taf4 protein_coding unknown_likely_coding MGP_AJ_T0059691.1 MGP_AJ_G0026947.1 mouse_genomes_project 2 178754364 178755347 - Taf4 protein_coding processed_transcript MGP_AJ_T0059692.1 MGP_AJ_G0026947.1 mouse_genomes_project 2 178755142 178762434 - Taf4 protein_coding processed_transcript MGP_AJ_T0001081.1 MGP_AJ_G0001010.1 mouse_genomes_project 2 36966316 36970028 + TEC TEC MGP_AJ_T0053662.1 MGP_AJ_G0025520.1 mouse_genomes_project 2 26834760 29450444 + Golga2 protein_coding retained_intron MGP_AJ_T0054080.1 MGP_AJ_G0025520.1 mouse_genomes_project 2 29429254 29440317 + MGP_AJ_P0054080 Golga2 protein_coding protein_coding MGP_AJ_T0054081.1 MGP_AJ_G0025520.1 mouse_genomes_project 2 29430123 29450455 + MGP_AJ_P0054081 Golga2 protein_coding protein_coding MGP_AJ_T0054082.1 MGP_AJ_G0025520.1 mouse_genomes_project 2 29430183 29450446 + MGP_AJ_P0054082 Golga2 protein_coding protein_coding MGP_AJ_T0054083.1 MGP_AJ_G0025520.1 mouse_genomes_project 2 29430203 29445494 + MGP_AJ_P0054083 Golga2 protein_coding protein_coding MGP_AJ_T0054084.1 MGP_AJ_G0025520.1 mouse_genomes_project 2 29430216 29450447 + MGP_AJ_P0054084 Golga2 protein_coding protein_coding MGP_AJ_T0054085.1 MGP_AJ_G0025520.1 mouse_genomes_project 2 29430221 29441851 + MGP_AJ_P0054085 Golga2 protein_coding protein_coding MGP_AJ_T0054086.1 MGP_AJ_G0025520.1 mouse_genomes_project 2 29430225 29444735 + MGP_AJ_P0054086 Golga2 protein_coding protein_coding MGP_AJ_T0054087.1 MGP_AJ_G0025520.1 mouse_genomes_project 2 29441329 29441812 + Golga2 protein_coding retained_intron MGP_AJ_T0054088.1 MGP_AJ_G0025520.1 mouse_genomes_project 2 29443747 29445484 + Golga2 protein_coding retained_intron MGP_AJ_T0054236.1 MGP_AJ_G0025600.1 mouse_genomes_project 2 29932387 29934199 + MGP_AJ_P0054236 Ptrh1 protein_coding protein_coding MGP_AJ_T0054237.1 MGP_AJ_G0025600.1 mouse_genomes_project 2 29932417 29933357 + Ptrh1 protein_coding processed_transcript MGP_AJ_T0054238.1 MGP_AJ_G0025600.1 mouse_genomes_project 2 29932466 29934051 + Ptrh1 protein_coding retained_intron MGP_AJ_T0013549.1 MGP_AJ_G0011644.1 mouse_genomes_project 2 53121406 53122896 + processed_pseudogene processed_pseudogene MGP_AJ_T0013732.1 MGP_AJ_G0011827.1 mouse_genomes_project 2 116363814 116364299 + processed_pseudogene processed_pseudogene MGP_AJ_T0055815.1 MGP_AJ_G0025962.1 mouse_genomes_project 2 84455211 84456144 - MGP_AJ_P0055815 Olfr1104 protein_coding protein_coding MGP_AJ_T0058914.1 MGP_AJ_G0026752.1 mouse_genomes_project 2 156426505 156456489 + MGP_AJ_P0058914 Vstm2l protein_coding protein_coding MGP_AJ_T0003909.1 MGP_AJ_G0003492.1 mouse_genomes_project 2 16474842 16479949 - Ptf1aos antisense antisense MGP_AJ_T0013443.1 MGP_AJ_G0011538.1 mouse_genomes_project 2 15315677 15316156 - processed_pseudogene processed_pseudogene MGP_AJ_T0010415.1 MGP_AJ_G0008537.1 mouse_genomes_project 2 62656283 62656388 - Mir6337 miRNA miRNA MGP_AJ_T0007296.1 MGP_AJ_G0005979.1 mouse_genomes_project 2 106664868 106667663 + Gm13923 lincRNA lincRNA MGP_AJ_T0013430.1 MGP_AJ_G0011525.1 mouse_genomes_project 2 11776020 11776399 - processed_pseudogene processed_pseudogene MGP_AJ_T0056029.1 MGP_AJ_G0026098.1 mouse_genomes_project 2 88546677 88593828 + Celf1 protein_coding processed_transcript MGP_AJ_T0056030.1 MGP_AJ_G0026098.1 mouse_genomes_project 2 88546692 88625407 + MGP_AJ_P0056030 Celf1 protein_coding protein_coding MGP_AJ_T0056031.1 MGP_AJ_G0026098.1 mouse_genomes_project 2 88546753 88604405 + Celf1 protein_coding processed_transcript MGP_AJ_T0056032.1 MGP_AJ_G0026098.1 mouse_genomes_project 2 88546832 88607277 + Celf1 protein_coding processed_transcript MGP_AJ_T0056033.1 MGP_AJ_G0026098.1 mouse_genomes_project 2 88548170 88624674 + MGP_AJ_P0056033 Celf1 protein_coding protein_coding MGP_AJ_T0056034.1 MGP_AJ_G0026098.1 mouse_genomes_project 2 88571017 88593890 + Celf1 protein_coding processed_transcript MGP_AJ_T0056035.1 MGP_AJ_G0026098.1 mouse_genomes_project 2 88593819 88625400 + MGP_AJ_P0056035 Celf1 protein_coding protein_coding MGP_AJ_T0056036.1 MGP_AJ_G0026098.1 mouse_genomes_project 2 88604367 88625407 + MGP_AJ_P0056036 Celf1 protein_coding protein_coding MGP_AJ_T0056037.1 MGP_AJ_G0026098.1 mouse_genomes_project 2 88618403 88619284 + Celf1 protein_coding processed_transcript MGP_AJ_T0052784.1 MGP_AJ_G0025358.1 mouse_genomes_project 2 16238567 16333699 + MGP_AJ_P0052784 Armc3 protein_coding unknown_likely_coding MGP_AJ_T0052785.1 MGP_AJ_G0025358.1 mouse_genomes_project 2 16238933 16333701 + MGP_AJ_P0052785 Armc3 protein_coding protein_coding MGP_AJ_T0052786.1 MGP_AJ_G0025358.1 mouse_genomes_project 2 16238933 16333701 + MGP_AJ_P0052786 Armc3 protein_coding protein_coding MGP_AJ_T0056457.1 MGP_AJ_G0026167.1 mouse_genomes_project 2 101352736 101391849 - MGP_AJ_P0056457 Nat10 protein_coding protein_coding MGP_AJ_T0056458.1 MGP_AJ_G0026167.1 mouse_genomes_project 2 101352740 101391820 - Nat10 protein_coding retained_intron MGP_AJ_T0056459.1 MGP_AJ_G0026167.1 mouse_genomes_project 2 101352740 101391820 - Nat10 protein_coding retained_intron MGP_AJ_T0056460.1 MGP_AJ_G0026167.1 mouse_genomes_project 2 101352740 101391776 - Nat10 protein_coding retained_intron MGP_AJ_T0056461.1 MGP_AJ_G0026167.1 mouse_genomes_project 2 101353141 101355910 - Nat10 protein_coding retained_intron MGP_AJ_T0056462.1 MGP_AJ_G0026167.1 mouse_genomes_project 2 101353407 101391783 - Nat10 protein_coding retained_intron MGP_AJ_T0056463.1 MGP_AJ_G0026167.1 mouse_genomes_project 2 101363288 101365960 - Nat10 protein_coding retained_intron MGP_AJ_T0056464.1 MGP_AJ_G0026167.1 mouse_genomes_project 2 101363483 101364726 - Nat10 protein_coding retained_intron MGP_AJ_T0056465.1 MGP_AJ_G0026167.1 mouse_genomes_project 2 101365805 101373972 - Nat10 protein_coding retained_intron MGP_AJ_T0056466.1 MGP_AJ_G0026167.1 mouse_genomes_project 2 101370171 101391849 - Nat10 protein_coding retained_intron MGP_AJ_T0056467.1 MGP_AJ_G0026167.1 mouse_genomes_project 2 101380815 101391505 - MGP_AJ_P0056467 Nat10 protein_coding protein_coding MGP_AJ_T0056468.1 MGP_AJ_G0026167.1 mouse_genomes_project 2 101383597 101391840 - Nat10 protein_coding retained_intron MGP_AJ_T0056469.1 MGP_AJ_G0026167.1 mouse_genomes_project 2 101387698 101391774 - Nat10 protein_coding retained_intron MGP_AJ_T0056470.1 MGP_AJ_G0026167.1 mouse_genomes_project 2 101387835 101389015 - MGP_AJ_P0056470 Nat10 protein_coding protein_coding MGP_AJ_T0058535.1 MGP_AJ_G0026690.1 mouse_genomes_project 2 153180797 153181573 - Gm14214 protein_coding translated_processed_pseudogene MGP_AJ_T0058536.1 MGP_AJ_G0026690.1 mouse_genomes_project 2 153180797 153181475 - MGP_AJ_P0058536 Gm14214 protein_coding protein_coding MGP_AJ_T0058737.1 MGP_AJ_G0026723.1 mouse_genomes_project 2 154563071 154582992 - MGP_AJ_P0058737 Rbm12 protein_coding protein_coding MGP_AJ_T0058738.1 MGP_AJ_G0026723.1 mouse_genomes_project 2 154563071 154582992 - MGP_AJ_P0058738 Rbm12 protein_coding protein_coding MGP_AJ_T0058739.1 MGP_AJ_G0026723.1 mouse_genomes_project 2 154568598 154582952 - MGP_AJ_P0058739 Rbm12 protein_coding protein_coding MGP_AJ_T0058740.1 MGP_AJ_G0026723.1 mouse_genomes_project 2 154569034 154583014 - MGP_AJ_P0058740 Rbm12 protein_coding protein_coding MGP_AJ_T0058741.1 MGP_AJ_G0026723.1 mouse_genomes_project 2 154569063 154582997 - MGP_AJ_P0058741 Rbm12 protein_coding protein_coding MGP_AJ_T0059139.1 MGP_AJ_G0026810.1 mouse_genomes_project 2 162813904 162816533 + MGP_AJ_P0059139 protein_coding protein_coding MGP_AJ_T0055348.1 MGP_AJ_G0025813.1 mouse_genomes_project 2 70668056 70694115 - MGP_AJ_P0055348 protein_coding unknown_likely_coding MGP_AJ_T0055349.1 MGP_AJ_G0025813.1 mouse_genomes_project 2 70687473 70694121 - protein_coding processed_transcript MGP_AJ_T0101078.1 MGP_AJ_G0039044.1 mouse_genomes_project 2 149271183 149271312 + Gm22187 snoRNA snoRNA MGP_AJ_T0058078.1 MGP_AJ_G0026552.1 mouse_genomes_project 2 142630012 142638645 - MGP_AJ_P0058078 Rbbp9 protein_coding protein_coding MGP_AJ_T0058079.1 MGP_AJ_G0026552.1 mouse_genomes_project 2 142631566 142638566 - Rbbp9 protein_coding processed_transcript MGP_AJ_T0013510.1 MGP_AJ_G0011605.1 mouse_genomes_project 2 36820484 36821581 + processed_pseudogene processed_pseudogene MGP_AJ_T0058919.1 MGP_AJ_G0026754.1 mouse_genomes_project 2 156543146 156594684 + MGP_AJ_P0058919 Rprd1b protein_coding protein_coding MGP_AJ_T0058920.1 MGP_AJ_G0026754.1 mouse_genomes_project 2 156543157 156564531 + Rprd1b protein_coding retained_intron MGP_AJ_T0058921.1 MGP_AJ_G0026754.1 mouse_genomes_project 2 156543341 156594684 + Rprd1b protein_coding processed_transcript MGP_AJ_T0058922.1 MGP_AJ_G0026754.1 mouse_genomes_project 2 156543350 156594684 + MGP_AJ_P0058922 Rprd1b protein_coding protein_coding MGP_AJ_T0058923.1 MGP_AJ_G0026754.1 mouse_genomes_project 2 156543370 156594684 + MGP_AJ_P0058923 Rprd1b protein_coding protein_coding MGP_AJ_T0058924.1 MGP_AJ_G0026754.1 mouse_genomes_project 2 156543448 156651393 + MGP_AJ_P0058924 Rprd1b protein_coding protein_coding MGP_AJ_T0058925.1 MGP_AJ_G0026754.1 mouse_genomes_project 2 156559243 156591549 + MGP_AJ_P0058925 Rprd1b protein_coding protein_coding MGP_AJ_T0058926.1 MGP_AJ_G0026754.1 mouse_genomes_project 2 156563779 156586990 + MGP_AJ_P0058926 Rprd1b protein_coding protein_coding MGP_AJ_T0102469.1 MGP_AJ_G0040211.1 mouse_genomes_project 2 67541983 67544157 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0055769.1 MGP_AJ_G0025918.1 mouse_genomes_project 2 83314299 83315338 + MGP_AJ_P0055769 Olfr1026 protein_coding protein_coding MGP_AJ_T0007222.1 MGP_AJ_G0005919.1 mouse_genomes_project 2 64424715 64465353 - Gm13598 lincRNA lincRNA MGP_AJ_T0017755.1 MGP_AJ_G0015386.1 mouse_genomes_project 2 28258091 28263926 - D330023K18Rik processed_transcript processed_transcript MGP_AJ_T0017756.1 MGP_AJ_G0015386.1 mouse_genomes_project 2 28262270 28263926 - D330023K18Rik processed_transcript processed_transcript MGP_AJ_T0059588.1 MGP_AJ_G0026919.1 mouse_genomes_project 2 171729026 171741038 + MGP_AJ_P0059588 Rbm38 protein_coding nonsense_mediated_decay MGP_AJ_T0059589.1 MGP_AJ_G0026919.1 mouse_genomes_project 2 171729040 171741853 + Rbm38 protein_coding retained_intron MGP_AJ_T0059590.1 MGP_AJ_G0026919.1 mouse_genomes_project 2 171729167 171740934 + MGP_AJ_P0059590 Rbm38 protein_coding protein_coding MGP_AJ_T0059591.1 MGP_AJ_G0026919.1 mouse_genomes_project 2 171729238 171740775 + MGP_AJ_P0059591 Rbm38 protein_coding nonsense_mediated_decay MGP_AJ_T0059592.1 MGP_AJ_G0026919.1 mouse_genomes_project 2 171729565 171740834 + MGP_AJ_P0059592 Rbm38 protein_coding protein_coding MGP_AJ_T0059593.1 MGP_AJ_G0026919.1 mouse_genomes_project 2 171730176 171741825 + Rbm38 protein_coding retained_intron MGP_AJ_T0052780.1 MGP_AJ_G0025356.1 mouse_genomes_project 2 15898233 16051561 - MGP_AJ_P0052780 Pip4k2a protein_coding protein_coding MGP_AJ_T0052781.1 MGP_AJ_G0025356.1 mouse_genomes_project 2 15900352 15922038 - MGP_AJ_P0052781 Pip4k2a protein_coding protein_coding MGP_AJ_T0052782.1 MGP_AJ_G0025356.1 mouse_genomes_project 2 15903478 15960217 - MGP_AJ_P0052782 Pip4k2a protein_coding protein_coding MGP_AJ_T0057924.1 MGP_AJ_G0026517.1 mouse_genomes_project 2 132640443 132685493 - MGP_AJ_P0057924 Tmx4 protein_coding protein_coding MGP_AJ_T0057925.1 MGP_AJ_G0026517.1 mouse_genomes_project 2 132645261 132685480 - Tmx4 protein_coding processed_transcript MGP_AJ_T0057926.1 MGP_AJ_G0026517.1 mouse_genomes_project 2 132652883 132685389 - MGP_AJ_P0057926 Tmx4 protein_coding protein_coding MGP_AJ_T0057927.1 MGP_AJ_G0026517.1 mouse_genomes_project 2 132680856 132685438 - MGP_AJ_P0057927 Tmx4 protein_coding protein_coding MGP_AJ_T0059703.1 MGP_AJ_G0026950.1 mouse_genomes_project 2 178879068 178904910 + MGP_AJ_P0059703 Ss18l1 protein_coding protein_coding MGP_AJ_T0013410.1 MGP_AJ_G0011505.1 mouse_genomes_project 2 1813458 1813935 - processed_pseudogene processed_pseudogene MGP_AJ_T0102490.1 MGP_AJ_G0040232.1 mouse_genomes_project 2 85032965 85033823 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0013546.1 MGP_AJ_G0011641.1 mouse_genomes_project 2 51620775 51622250 + processed_pseudogene processed_pseudogene MGP_AJ_T0102491.1 MGP_AJ_G0040233.1 mouse_genomes_project 2 85355342 85355655 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0013806.1 MGP_AJ_G0011901.1 mouse_genomes_project 2 145391221 145391703 - processed_pseudogene processed_pseudogene MGP_AJ_T0059981.1 MGP_AJ_G0027000.1 mouse_genomes_project 2 180543990 180549431 - MGP_AJ_P0059981 Rgs19 protein_coding protein_coding MGP_AJ_T0059982.1 MGP_AJ_G0027000.1 mouse_genomes_project 2 180543996 180545059 - MGP_AJ_P0059982 Rgs19 protein_coding protein_coding MGP_AJ_T0059983.1 MGP_AJ_G0027000.1 mouse_genomes_project 2 180543999 180549438 - MGP_AJ_P0059983 Rgs19 protein_coding protein_coding MGP_AJ_T0059984.1 MGP_AJ_G0027000.1 mouse_genomes_project 2 180544081 180547335 - MGP_AJ_P0059984 Rgs19 protein_coding protein_coding MGP_AJ_T0059985.1 MGP_AJ_G0027000.1 mouse_genomes_project 2 180544084 180549448 - MGP_AJ_P0059985 Rgs19 protein_coding protein_coding MGP_AJ_T0059986.1 MGP_AJ_G0027000.1 mouse_genomes_project 2 180544893 180549149 - Rgs19 protein_coding processed_transcript MGP_AJ_T0059987.1 MGP_AJ_G0027000.1 mouse_genomes_project 2 180544978 180549467 - Rgs19 protein_coding processed_transcript MGP_AJ_T0059988.1 MGP_AJ_G0027000.1 mouse_genomes_project 2 180545220 180549425 - Rgs19 protein_coding processed_transcript MGP_AJ_T0055475.1 MGP_AJ_G0025846.1 mouse_genomes_project 2 74082364 74103895 + MGP_AJ_P0055475 Plekha3 protein_coding protein_coding MGP_AJ_T0055476.1 MGP_AJ_G0025846.1 mouse_genomes_project 2 74096918 74099830 + Plekha3 protein_coding processed_transcript MGP_AJ_T0013886.1 MGP_AJ_G0011981.1 mouse_genomes_project 2 178829432 178829841 + processed_pseudogene processed_pseudogene MGP_AJ_T0101076.1 MGP_AJ_G0039042.1 mouse_genomes_project 2 147721380 147721472 - Gm24551 snoRNA snoRNA MGP_AJ_T0004152.1 MGP_AJ_G0003670.1 mouse_genomes_project 2 162042451 162083791 - Hnf4aos antisense antisense MGP_AJ_T0004153.1 MGP_AJ_G0003670.1 mouse_genomes_project 2 162042451 162083791 - Hnf4aos antisense antisense MGP_AJ_T0004154.1 MGP_AJ_G0003670.1 mouse_genomes_project 2 162042838 162083763 - Hnf4aos antisense antisense MGP_AJ_T0004026.1 MGP_AJ_G0003577.1 mouse_genomes_project 2 72525359 72703147 + 2600014E21Rik antisense antisense MGP_AJ_T0004014.1 MGP_AJ_G0003570.1 mouse_genomes_project 2 70801607 70808829 + Gm13707 antisense antisense MGP_AJ_T0013816.1 MGP_AJ_G0011911.1 mouse_genomes_project 2 148572680 148573075 - processed_pseudogene processed_pseudogene MGP_AJ_T0053559.1 MGP_AJ_G0025500.1 mouse_genomes_project 2 25549931 25556310 + Gbgt1 protein_coding processed_transcript MGP_AJ_T0053560.1 MGP_AJ_G0025500.1 mouse_genomes_project 2 25549931 25558463 + MGP_AJ_P0053560 Gbgt1 protein_coding protein_coding MGP_AJ_T0053561.1 MGP_AJ_G0025500.1 mouse_genomes_project 2 25550786 25558463 + MGP_AJ_P0053561 Gbgt1 protein_coding protein_coding MGP_AJ_T0017747.1 MGP_AJ_G0015380.1 mouse_genomes_project 2 24930816 24934944 - 2810430I11Rik processed_transcript processed_transcript MGP_AJ_T0054510.1 MGP_AJ_G0025655.1 mouse_genomes_project 2 34063461 34064409 + MGP_AJ_P0054510 Olfr352 protein_coding protein_coding MGP_AJ_T0013836.1 MGP_AJ_G0011931.1 mouse_genomes_project 2 154001887 154002349 + processed_pseudogene processed_pseudogene MGP_AJ_T0058159.1 MGP_AJ_G0026569.1 mouse_genomes_project 2 146166633 146169706 - MGP_AJ_P0058159 Foxa2 protein_coding protein_coding MGP_AJ_T0058160.1 MGP_AJ_G0026569.1 mouse_genomes_project 2 146166633 146170727 - MGP_AJ_P0058160 Foxa2 protein_coding protein_coding MGP_AJ_T0058161.1 MGP_AJ_G0026569.1 mouse_genomes_project 2 146167298 146170654 - MGP_AJ_P0058161 Foxa2 protein_coding protein_coding MGP_AJ_T0058162.1 MGP_AJ_G0026569.1 mouse_genomes_project 2 146167996 146169222 - Foxa2 protein_coding processed_transcript MGP_AJ_T0053261.1 MGP_AJ_G0025447.1 mouse_genomes_project 2 22792125 22795403 + MGP_AJ_P0053261 Lcn11 protein_coding protein_coding MGP_AJ_T0059123.1 MGP_AJ_G0026802.1 mouse_genomes_project 2 162594844 162611044 + MGP_AJ_P0059123 Stk4 protein_coding protein_coding MGP_AJ_T0059124.1 MGP_AJ_G0026802.1 mouse_genomes_project 2 162598608 162679556 + MGP_AJ_P0059124 Stk4 protein_coding protein_coding MGP_AJ_T0059125.1 MGP_AJ_G0026802.1 mouse_genomes_project 2 162606036 162621242 + Stk4 protein_coding processed_transcript MGP_AJ_T0059126.1 MGP_AJ_G0026802.1 mouse_genomes_project 2 162623923 162642547 + MGP_AJ_P0059126 Stk4 protein_coding protein_coding MGP_AJ_T0059127.1 MGP_AJ_G0026802.1 mouse_genomes_project 2 162634423 162679556 + MGP_AJ_P0059127 Stk4 protein_coding protein_coding MGP_AJ_T0013620.1 MGP_AJ_G0011715.1 mouse_genomes_project 2 78012248 78012933 - processed_pseudogene processed_pseudogene MGP_AJ_T0052441.1 MGP_AJ_G0025303.1 mouse_genomes_project 2 2863637 2888179 - MGP_AJ_P0052441 Sec61a2 protein_coding protein_coding MGP_AJ_T0052442.1 MGP_AJ_G0025303.1 mouse_genomes_project 2 2863679 2888081 - MGP_AJ_P0052442 Sec61a2 protein_coding protein_coding MGP_AJ_T0052443.1 MGP_AJ_G0025303.1 mouse_genomes_project 2 2864245 2869111 - MGP_AJ_P0052443 Sec61a2 protein_coding protein_coding MGP_AJ_T0052444.1 MGP_AJ_G0025303.1 mouse_genomes_project 2 2864643 2867447 - Sec61a2 protein_coding processed_transcript MGP_AJ_T0052445.1 MGP_AJ_G0025303.1 mouse_genomes_project 2 2866061 2866941 - Sec61a2 protein_coding processed_transcript MGP_AJ_T0052446.1 MGP_AJ_G0025303.1 mouse_genomes_project 2 2866448 2869675 - Sec61a2 protein_coding processed_transcript MGP_AJ_T0052447.1 MGP_AJ_G0025303.1 mouse_genomes_project 2 2869056 2870641 - Sec61a2 protein_coding processed_transcript MGP_AJ_T0052448.1 MGP_AJ_G0025303.1 mouse_genomes_project 2 2869124 2871022 - Sec61a2 protein_coding processed_transcript MGP_AJ_T0052449.1 MGP_AJ_G0025303.1 mouse_genomes_project 2 2870505 2888066 - MGP_AJ_P0052449 Sec61a2 protein_coding protein_coding MGP_AJ_T0052450.1 MGP_AJ_G0025303.1 mouse_genomes_project 2 2874497 2888081 - Sec61a2 protein_coding retained_intron MGP_AJ_T0013844.1 MGP_AJ_G0011939.1 mouse_genomes_project 2 155331038 155340498 + processed_pseudogene processed_pseudogene MGP_AJ_T0058571.1 MGP_AJ_G0026697.1 mouse_genomes_project 2 153722059 153723836 + MGP_AJ_P0058571 Map1lc3a protein_coding protein_coding MGP_AJ_T0058572.1 MGP_AJ_G0026697.1 mouse_genomes_project 2 153722305 153723833 + Map1lc3a protein_coding processed_transcript MGP_AJ_T0058573.1 MGP_AJ_G0026697.1 mouse_genomes_project 2 153722651 153723831 + Map1lc3a protein_coding processed_transcript MGP_AJ_T0058442.1 MGP_AJ_G0026661.1 mouse_genomes_project 2 151934569 151951871 - MGP_AJ_P0058442 Commd7 protein_coding protein_coding MGP_AJ_T0058443.1 MGP_AJ_G0026661.1 mouse_genomes_project 2 151936361 151951821 - Commd7 protein_coding retained_intron MGP_AJ_T0058444.1 MGP_AJ_G0026661.1 mouse_genomes_project 2 151936361 151951830 - MGP_AJ_P0058444 Commd7 protein_coding protein_coding MGP_AJ_T0013438.1 MGP_AJ_G0011533.1 mouse_genomes_project 2 14032512 14033523 - processed_pseudogene processed_pseudogene MGP_AJ_T0054473.1 MGP_AJ_G0025637.1 mouse_genomes_project 2 33279998 33302114 - MGP_AJ_P0054473 Lhx6 protein_coding protein_coding MGP_AJ_T0054474.1 MGP_AJ_G0025637.1 mouse_genomes_project 2 33279998 33303324 - MGP_AJ_P0054474 Lhx6 protein_coding protein_coding MGP_AJ_T0054475.1 MGP_AJ_G0025637.1 mouse_genomes_project 2 33279998 33303461 - MGP_AJ_P0054475 Lhx6 protein_coding protein_coding MGP_AJ_T0054476.1 MGP_AJ_G0025637.1 mouse_genomes_project 2 33279998 33302114 - MGP_AJ_P0054476 Lhx6 protein_coding protein_coding MGP_AJ_T0054477.1 MGP_AJ_G0025637.1 mouse_genomes_project 2 33279999 33303461 - MGP_AJ_P0054477 Lhx6 protein_coding protein_coding MGP_AJ_T0054478.1 MGP_AJ_G0025637.1 mouse_genomes_project 2 33281728 33292318 - MGP_AJ_P0054478 Lhx6 protein_coding protein_coding MGP_AJ_T0054479.1 MGP_AJ_G0025637.1 mouse_genomes_project 2 33281731 33302944 - MGP_AJ_P0054479 Lhx6 protein_coding protein_coding MGP_AJ_T0054480.1 MGP_AJ_G0025637.1 mouse_genomes_project 2 33292269 33301646 - Lhx6 protein_coding retained_intron MGP_AJ_T0054481.1 MGP_AJ_G0025637.1 mouse_genomes_project 2 33299380 33303308 - Lhx6 protein_coding processed_transcript MGP_AJ_T0058574.1 MGP_AJ_G0026698.1 mouse_genomes_project 2 153724005 153747189 - Pigu protein_coding processed_transcript MGP_AJ_T0058575.1 MGP_AJ_G0026698.1 mouse_genomes_project 2 153724005 153805071 - MGP_AJ_P0058575 Pigu protein_coding protein_coding MGP_AJ_T0058576.1 MGP_AJ_G0026698.1 mouse_genomes_project 2 153724006 153805065 - MGP_AJ_P0058576 Pigu protein_coding protein_coding MGP_AJ_T0058577.1 MGP_AJ_G0026698.1 mouse_genomes_project 2 153747152 153750666 - Pigu protein_coding processed_transcript MGP_AJ_T0058578.1 MGP_AJ_G0026698.1 mouse_genomes_project 2 153779332 153805060 - Pigu protein_coding retained_intron MGP_AJ_T0013474.1 MGP_AJ_G0011569.1 mouse_genomes_project 2 24059126 24060004 + processed_pseudogene processed_pseudogene MGP_AJ_T0007349.1 MGP_AJ_G0006022.1 mouse_genomes_project 2 136690700 136749987 + Gm14061 lincRNA lincRNA MGP_AJ_T0057200.1 MGP_AJ_G0026348.1 mouse_genomes_project 2 119124061 119168179 - MGP_AJ_P0057200 Ppip5k1 protein_coding protein_coding MGP_AJ_T0057201.1 MGP_AJ_G0026348.1 mouse_genomes_project 2 119124061 119168182 - MGP_AJ_P0057201 Ppip5k1 protein_coding protein_coding MGP_AJ_T0057202.1 MGP_AJ_G0026348.1 mouse_genomes_project 2 119124397 119168245 - MGP_AJ_P0057202 Ppip5k1 protein_coding protein_coding MGP_AJ_T0057203.1 MGP_AJ_G0026348.1 mouse_genomes_project 2 119125153 119167985 - MGP_AJ_P0057203 Ppip5k1 protein_coding unknown_likely_coding MGP_AJ_T0057204.1 MGP_AJ_G0026348.1 mouse_genomes_project 2 119135119 119150020 - MGP_AJ_P0057204 Ppip5k1 protein_coding protein_coding MGP_AJ_T0057205.1 MGP_AJ_G0026348.1 mouse_genomes_project 2 119135154 119147603 - MGP_AJ_P0057205 Ppip5k1 protein_coding protein_coding MGP_AJ_T0057206.1 MGP_AJ_G0026348.1 mouse_genomes_project 2 119135232 119149590 - MGP_AJ_P0057206 Ppip5k1 protein_coding protein_coding MGP_AJ_T0057207.1 MGP_AJ_G0026348.1 mouse_genomes_project 2 119141099 119150016 - MGP_AJ_P0057207 Ppip5k1 protein_coding protein_coding MGP_AJ_T0057208.1 MGP_AJ_G0026348.1 mouse_genomes_project 2 119141880 119149880 - Ppip5k1 protein_coding retained_intron MGP_AJ_T0057209.1 MGP_AJ_G0026348.1 mouse_genomes_project 2 119145223 119167926 - Ppip5k1 protein_coding retained_intron MGP_AJ_T0057210.1 MGP_AJ_G0026348.1 mouse_genomes_project 2 119147343 119154840 - Ppip5k1 protein_coding retained_intron MGP_AJ_T0057211.1 MGP_AJ_G0026348.1 mouse_genomes_project 2 119153222 119168160 - Ppip5k1 protein_coding retained_intron MGP_AJ_T0057212.1 MGP_AJ_G0026348.1 mouse_genomes_project 2 119156389 119161624 - MGP_AJ_P0057212 Ppip5k1 protein_coding nonsense_mediated_decay MGP_AJ_T0057213.1 MGP_AJ_G0026348.1 mouse_genomes_project 2 119159447 119168179 - Ppip5k1 protein_coding retained_intron MGP_AJ_T0057214.1 MGP_AJ_G0026348.1 mouse_genomes_project 2 119159860 119167924 - Ppip5k1 protein_coding retained_intron MGP_AJ_T0057215.1 MGP_AJ_G0026348.1 mouse_genomes_project 2 119161024 119167921 - Ppip5k1 protein_coding retained_intron MGP_AJ_T0057216.1 MGP_AJ_G0026348.1 mouse_genomes_project 2 119163309 119168133 - MGP_AJ_P0057216 Ppip5k1 protein_coding protein_coding MGP_AJ_T0013544.1 MGP_AJ_G0011639.1 mouse_genomes_project 2 50914140 50915188 + processed_pseudogene processed_pseudogene MGP_AJ_T0053977.1 MGP_AJ_G0025562.1 mouse_genomes_project 2 28430437 28577620 + MGP_AJ_P0053977 protein_coding unknown_likely_coding MGP_AJ_T0053978.1 MGP_AJ_G0025562.1 mouse_genomes_project 2 28430437 28577964 + MGP_AJ_P0053978 protein_coding protein_coding MGP_AJ_T0053979.1 MGP_AJ_G0025562.1 mouse_genomes_project 2 28516656 28522174 + MGP_AJ_P0053979 protein_coding protein_coding MGP_AJ_T0053980.1 MGP_AJ_G0025562.1 mouse_genomes_project 2 28555193 28577949 + protein_coding retained_intron MGP_AJ_T0053981.1 MGP_AJ_G0025562.1 mouse_genomes_project 2 28563891 28577963 + protein_coding processed_transcript MGP_AJ_T0053982.1 MGP_AJ_G0025562.1 mouse_genomes_project 2 28571644 28575251 + protein_coding retained_intron MGP_AJ_T0017796.1 MGP_AJ_G0015416.1 mouse_genomes_project 2 86764063 86768842 - Gm13764 processed_transcript processed_transcript MGP_AJ_T0007250.1 MGP_AJ_G0005942.1 mouse_genomes_project 2 73118584 73119167 - Gm13656 lincRNA lincRNA MGP_AJ_T0017777.1 MGP_AJ_G0015399.1 mouse_genomes_project 2 67174880 67175646 - Gm13625 processed_transcript processed_transcript MGP_AJ_T0055514.1 MGP_AJ_G0025849.1 mouse_genomes_project 2 74600639 74657143 - MGP_AJ_P0055514 Sestd1 protein_coding unknown_likely_coding MGP_AJ_T0055515.1 MGP_AJ_G0025849.1 mouse_genomes_project 2 74611277 74613820 - Sestd1 protein_coding processed_transcript MGP_AJ_T0055516.1 MGP_AJ_G0025849.1 mouse_genomes_project 2 74611279 74688672 - Sestd1 protein_coding processed_transcript MGP_AJ_T0003943.1 MGP_AJ_G0003516.1 mouse_genomes_project 2 27500551 27502174 + Gm16323 antisense antisense MGP_AJ_T0058490.1 MGP_AJ_G0026677.1 mouse_genomes_project 2 152608818 152665937 + protein_coding retained_intron MGP_AJ_T0058491.1 MGP_AJ_G0026677.1 mouse_genomes_project 2 152654086 152672860 + MGP_AJ_P0058491 protein_coding protein_coding MGP_AJ_T0058493.1 MGP_AJ_G0026677.1 mouse_genomes_project 2 152665488 152672860 + protein_coding processed_transcript MGP_AJ_T0057387.1 MGP_AJ_G0026388.1 mouse_genomes_project 2 123084146 123098957 + MGP_AJ_P0057387 Ctxn2 protein_coding protein_coding MGP_AJ_T0007130.1 MGP_AJ_G0005847.1 mouse_genomes_project 2 2123724 2217464 - Gm26776 lincRNA lincRNA MGP_AJ_T0056718.1 MGP_AJ_G0026254.1 mouse_genomes_project 2 110234886 110375298 + MGP_AJ_P0056718 Aven protein_coding protein_coding MGP_AJ_T0056719.1 MGP_AJ_G0026254.1 mouse_genomes_project 2 110297759 110370742 + Aven protein_coding processed_transcript MGP_AJ_T0056720.1 MGP_AJ_G0026254.1 mouse_genomes_project 2 110298111 110371577 + MGP_AJ_P0056720 Aven protein_coding protein_coding MGP_AJ_T0098796.1 MGP_AJ_G0036780.1 mouse_genomes_project 2 129461965 129462267 - Gm22902 ribozyme ribozyme MGP_AJ_T0101086.1 MGP_AJ_G0039052.1 mouse_genomes_project 2 156871471 156871602 - Gm24411 snoRNA snoRNA MGP_AJ_T0055871.1 MGP_AJ_G0026008.1 mouse_genomes_project 2 85579179 85580124 - MGP_AJ_P0055871 protein_coding protein_coding MGP_AJ_T0055872.1 MGP_AJ_G0026008.1 mouse_genomes_project 2 85579179 85580614 - MGP_AJ_P0055872 protein_coding protein_coding MGP_AJ_T0010331.1 MGP_AJ_G0008453.1 mouse_genomes_project 2 7489020 7489128 + Gm22677 miRNA miRNA MGP_AJ_T0001023.1 MGP_AJ_G0000954.1 mouse_genomes_project 2 8044517 8044628 - TEC TEC MGP_AJ_T0055341.1 MGP_AJ_G0025811.1 mouse_genomes_project 2 70460460 70598361 - MGP_AJ_P0055341 Ola1 protein_coding protein_coding MGP_AJ_T0055342.1 MGP_AJ_G0025811.1 mouse_genomes_project 2 70460859 70598340 - Ola1 protein_coding processed_transcript MGP_AJ_T0055343.1 MGP_AJ_G0025811.1 mouse_genomes_project 2 70460861 70596874 - MGP_AJ_P0055343 Ola1 protein_coding protein_coding MGP_AJ_T0055344.1 MGP_AJ_G0025811.1 mouse_genomes_project 2 70506218 70598247 - MGP_AJ_P0055344 Ola1 protein_coding protein_coding MGP_AJ_T0055345.1 MGP_AJ_G0025811.1 mouse_genomes_project 2 70582514 70598326 - Ola1 protein_coding processed_transcript MGP_AJ_T0055346.1 MGP_AJ_G0025811.1 mouse_genomes_project 2 70596784 70602839 - Ola1 protein_coding processed_transcript MGP_AJ_T0056177.1 MGP_AJ_G0026116.1 mouse_genomes_project 2 89294285 89315891 - MGP_AJ_P0056177 Atg13 protein_coding unknown_likely_coding MGP_AJ_T0056178.1 MGP_AJ_G0026116.1 mouse_genomes_project 2 89294288 89331225 - MGP_AJ_P0056178 Atg13 protein_coding protein_coding MGP_AJ_T0056179.1 MGP_AJ_G0026116.1 mouse_genomes_project 2 89294289 89331168 - MGP_AJ_P0056179 Atg13 protein_coding protein_coding MGP_AJ_T0056180.1 MGP_AJ_G0026116.1 mouse_genomes_project 2 89295953 89299386 - Atg13 protein_coding processed_transcript MGP_AJ_T0056181.1 MGP_AJ_G0026116.1 mouse_genomes_project 2 89295988 89301856 - Atg13 protein_coding processed_transcript MGP_AJ_T0056182.1 MGP_AJ_G0026116.1 mouse_genomes_project 2 89299076 89305005 - Atg13 protein_coding processed_transcript MGP_AJ_T0056183.1 MGP_AJ_G0026116.1 mouse_genomes_project 2 89308466 89325570 - Atg13 protein_coding processed_transcript MGP_AJ_T0054030.1 MGP_AJ_G0025572.1 mouse_genomes_project 2 29110611 29188732 + MGP_AJ_P0054030 Nup214 protein_coding protein_coding MGP_AJ_T0054031.1 MGP_AJ_G0025572.1 mouse_genomes_project 2 29110661 29116163 + Nup214 protein_coding retained_intron MGP_AJ_T0054032.1 MGP_AJ_G0025572.1 mouse_genomes_project 2 29115978 29127568 + Nup214 protein_coding processed_transcript MGP_AJ_T0054033.1 MGP_AJ_G0025572.1 mouse_genomes_project 2 29131003 29134880 + Nup214 protein_coding processed_transcript MGP_AJ_T0054034.1 MGP_AJ_G0025572.1 mouse_genomes_project 2 29134143 29140198 + MGP_AJ_P0054034 Nup214 protein_coding protein_coding MGP_AJ_T0054035.1 MGP_AJ_G0025572.1 mouse_genomes_project 2 29145933 29147307 + Nup214 protein_coding processed_transcript MGP_AJ_T0054036.1 MGP_AJ_G0025572.1 mouse_genomes_project 2 29160961 29168123 + Nup214 protein_coding processed_transcript MGP_AJ_T0054037.1 MGP_AJ_G0025572.1 mouse_genomes_project 2 29170376 29191221 + MGP_AJ_P0054037 Nup214 protein_coding protein_coding MGP_AJ_T0054038.1 MGP_AJ_G0025572.1 mouse_genomes_project 2 29178916 29188728 + MGP_AJ_P0054038 Nup214 protein_coding protein_coding MGP_AJ_T0054040.1 MGP_AJ_G0025572.1 mouse_genomes_project 2 29187355 29189215 + Nup214 protein_coding retained_intron MGP_AJ_T0054041.1 MGP_AJ_G0025572.1 mouse_genomes_project 2 29188052 29188726 + Nup214 protein_coding retained_intron MGP_AJ_T0055868.1 MGP_AJ_G0026005.1 mouse_genomes_project 2 85500160 85501117 - MGP_AJ_P0055868 Olfr74 protein_coding protein_coding MGP_AJ_T0053093.1 MGP_AJ_G0025415.1 mouse_genomes_project 2 22270472 22299571 - MGP_AJ_P0053093 Grin1 protein_coding protein_coding MGP_AJ_T0053094.1 MGP_AJ_G0025415.1 mouse_genomes_project 2 22270472 22299571 - MGP_AJ_P0053094 Grin1 protein_coding protein_coding MGP_AJ_T0053095.1 MGP_AJ_G0025415.1 mouse_genomes_project 2 22270472 22299546 - MGP_AJ_P0053095 Grin1 protein_coding protein_coding MGP_AJ_T0053096.1 MGP_AJ_G0025415.1 mouse_genomes_project 2 22270472 22299546 - MGP_AJ_P0053096 Grin1 protein_coding protein_coding MGP_AJ_T0053097.1 MGP_AJ_G0025415.1 mouse_genomes_project 2 22270472 22299571 - MGP_AJ_P0053097 Grin1 protein_coding protein_coding MGP_AJ_T0053098.1 MGP_AJ_G0025415.1 mouse_genomes_project 2 22270472 22299638 - MGP_AJ_P0053098 Grin1 protein_coding protein_coding MGP_AJ_T0053099.1 MGP_AJ_G0025415.1 mouse_genomes_project 2 22270472 22299546 - MGP_AJ_P0053099 Grin1 protein_coding protein_coding MGP_AJ_T0053100.1 MGP_AJ_G0025415.1 mouse_genomes_project 2 22270472 22299546 - MGP_AJ_P0053100 Grin1 protein_coding protein_coding MGP_AJ_T0053101.1 MGP_AJ_G0025415.1 mouse_genomes_project 2 22270648 22284249 - Grin1 protein_coding processed_transcript MGP_AJ_T0053102.1 MGP_AJ_G0025415.1 mouse_genomes_project 2 22271349 22275971 - Grin1 protein_coding processed_transcript MGP_AJ_T0053103.1 MGP_AJ_G0025415.1 mouse_genomes_project 2 22283944 22285551 - Grin1 protein_coding processed_transcript MGP_AJ_T0053104.1 MGP_AJ_G0025415.1 mouse_genomes_project 2 22284047 22285848 - Grin1 protein_coding processed_transcript MGP_AJ_T0053105.1 MGP_AJ_G0025415.1 mouse_genomes_project 2 22291251 22299577 - Grin1 protein_coding processed_transcript MGP_AJ_T0053106.1 MGP_AJ_G0025415.1 mouse_genomes_project 2 22294851 22299614 - Grin1 protein_coding processed_transcript MGP_AJ_T0053928.1 MGP_AJ_G0025556.1 mouse_genomes_project 2 28065937 28073244 - MGP_AJ_P0053928 Tor1a protein_coding protein_coding MGP_AJ_T0053929.1 MGP_AJ_G0025556.1 mouse_genomes_project 2 28065990 28073183 - Tor1a protein_coding retained_intron MGP_AJ_T0053930.1 MGP_AJ_G0025556.1 mouse_genomes_project 2 28066322 28069159 - Tor1a protein_coding retained_intron MGP_AJ_T0053931.1 MGP_AJ_G0025556.1 mouse_genomes_project 2 28066363 28069186 - Tor1a protein_coding retained_intron MGP_AJ_T0053932.1 MGP_AJ_G0025556.1 mouse_genomes_project 2 28072221 28073199 - Tor1a protein_coding retained_intron MGP_AJ_T0052322.1 MGP_AJ_G0025282.1 mouse_genomes_project 2 298033 323633 - MGP_AJ_P0052322 Olah protein_coding protein_coding MGP_AJ_T0052323.1 MGP_AJ_G0025282.1 mouse_genomes_project 2 298038 349146 - MGP_AJ_P0052323 Olah protein_coding protein_coding MGP_AJ_T0052324.1 MGP_AJ_G0025282.1 mouse_genomes_project 2 298068 323611 - MGP_AJ_P0052324 Olah protein_coding protein_coding MGP_AJ_T0098649.1 MGP_AJ_G0036633.1 mouse_genomes_project 2 72316396 72316496 - n-R5s198 rRNA rRNA MGP_AJ_T0001098.1 MGP_AJ_G0001026.1 mouse_genomes_project 2 127202540 127203581 - TEC TEC MGP_AJ_T0056382.1 MGP_AJ_G0026152.1 mouse_genomes_project 2 99276614 99284539 + Traf6 protein_coding processed_transcript MGP_AJ_T0056383.1 MGP_AJ_G0026152.1 mouse_genomes_project 2 99276625 99299988 + MGP_AJ_P0056383 Traf6 protein_coding protein_coding MGP_AJ_T0056384.1 MGP_AJ_G0026152.1 mouse_genomes_project 2 99282518 99288405 + Traf6 protein_coding processed_transcript MGP_AJ_T0057310.1 MGP_AJ_G0026371.1 mouse_genomes_project 2 120103245 120136221 + MGP_AJ_P0057310 Sord protein_coding protein_coding MGP_AJ_T0013849.1 MGP_AJ_G0011944.1 mouse_genomes_project 2 155670138 155670498 + processed_pseudogene processed_pseudogene MGP_AJ_T0013540.1 MGP_AJ_G0011635.1 mouse_genomes_project 2 49694415 49695275 - processed_pseudogene processed_pseudogene MGP_AJ_T0054279.1 MGP_AJ_G0025607.1 mouse_genomes_project 2 30144560 30291303 - MGP_AJ_P0054279 Garnl3 protein_coding protein_coding MGP_AJ_T0054280.1 MGP_AJ_G0025607.1 mouse_genomes_project 2 30144565 30246638 - MGP_AJ_P0054280 Garnl3 protein_coding protein_coding MGP_AJ_T0054281.1 MGP_AJ_G0025607.1 mouse_genomes_project 2 30144715 30245761 - MGP_AJ_P0054281 Garnl3 protein_coding protein_coding MGP_AJ_T0054282.1 MGP_AJ_G0025607.1 mouse_genomes_project 2 30163108 30166805 - Garnl3 protein_coding retained_intron MGP_AJ_T0054283.1 MGP_AJ_G0025607.1 mouse_genomes_project 2 30167404 30265786 - Garnl3 protein_coding processed_transcript MGP_AJ_T0054284.1 MGP_AJ_G0025607.1 mouse_genomes_project 2 30173624 30193187 - MGP_AJ_P0054284 Garnl3 protein_coding nonsense_mediated_decay MGP_AJ_T0054285.1 MGP_AJ_G0025607.1 mouse_genomes_project 2 30177717 30185606 - Garnl3 protein_coding retained_intron MGP_AJ_T0054286.1 MGP_AJ_G0025607.1 mouse_genomes_project 2 30206197 30246185 - Garnl3 protein_coding processed_transcript MGP_AJ_T0054287.1 MGP_AJ_G0025607.1 mouse_genomes_project 2 30213762 30245950 - Garnl3 protein_coding processed_transcript MGP_AJ_T0054288.1 MGP_AJ_G0025607.1 mouse_genomes_project 2 30213767 30292438 - MGP_AJ_P0054288 Garnl3 protein_coding protein_coding MGP_AJ_T0054289.1 MGP_AJ_G0025607.1 mouse_genomes_project 2 30213769 30292442 - MGP_AJ_P0054289 Garnl3 protein_coding nonsense_mediated_decay MGP_AJ_T0054290.1 MGP_AJ_G0025607.1 mouse_genomes_project 2 30213814 30291396 - MGP_AJ_P0054290 Garnl3 protein_coding protein_coding MGP_AJ_T0007436.1 MGP_AJ_G0006095.1 mouse_genomes_project 2 173603736 173613945 + Gm14616 lincRNA lincRNA MGP_AJ_T0003925.1 MGP_AJ_G0003504.1 mouse_genomes_project 2 23072540 23073798 + Gm13554 antisense antisense MGP_AJ_T0013505.1 MGP_AJ_G0011600.1 mouse_genomes_project 2 36471179 36471542 - processed_pseudogene processed_pseudogene MGP_AJ_T0003977.1 MGP_AJ_G0003544.1 mouse_genomes_project 2 55590653 55600825 + Gm13544 antisense antisense MGP_AJ_T0007239.1 MGP_AJ_G0005933.1 mouse_genomes_project 2 71699228 71708136 - 4930441J16Rik lincRNA lincRNA MGP_AJ_T0052312.1 MGP_AJ_G0025278.1 mouse_genomes_project 2 66738 180120 + MGP_AJ_P0052312 Fam171a1 protein_coding protein_coding MGP_AJ_T0052313.1 MGP_AJ_G0025278.1 mouse_genomes_project 2 70896 180676 + MGP_AJ_P0052313 Fam171a1 protein_coding protein_coding MGP_AJ_T0052314.1 MGP_AJ_G0025278.1 mouse_genomes_project 2 70927 180122 + MGP_AJ_P0052314 Fam171a1 protein_coding protein_coding MGP_AJ_T0052315.1 MGP_AJ_G0025278.1 mouse_genomes_project 2 71199 180676 + MGP_AJ_P0052315 Fam171a1 protein_coding protein_coding MGP_AJ_T0058532.1 MGP_AJ_G0026689.1 mouse_genomes_project 2 153054694 153099716 + Chmp4b protein_coding processed_transcript MGP_AJ_T0058533.1 MGP_AJ_G0026689.1 mouse_genomes_project 2 153059868 153099721 + MGP_AJ_P0058533 Chmp4b protein_coding protein_coding MGP_AJ_T0058534.1 MGP_AJ_G0026689.1 mouse_genomes_project 2 153096047 153099218 + Chmp4b protein_coding retained_intron MGP_AJ_T0007137.1 MGP_AJ_G0005852.1 mouse_genomes_project 2 4511977 4513348 + Gm28641 lincRNA lincRNA MGP_AJ_T0013593.1 MGP_AJ_G0011688.1 mouse_genomes_project 2 69695857 69696153 + processed_pseudogene processed_pseudogene MGP_AJ_T0058618.1 MGP_AJ_G0026705.1 mouse_genomes_project 2 154090416 154150402 - MGP_AJ_P0058618 Trpc4ap protein_coding protein_coding MGP_AJ_T0058619.1 MGP_AJ_G0026705.1 mouse_genomes_project 2 154090453 154150350 - MGP_AJ_P0058619 Trpc4ap protein_coding protein_coding MGP_AJ_T0058620.1 MGP_AJ_G0026705.1 mouse_genomes_project 2 154090890 154093882 - Trpc4ap protein_coding processed_transcript MGP_AJ_T0058621.1 MGP_AJ_G0026705.1 mouse_genomes_project 2 154091741 154093928 - Trpc4ap protein_coding retained_intron MGP_AJ_T0058622.1 MGP_AJ_G0026705.1 mouse_genomes_project 2 154095121 154129722 - Trpc4ap protein_coding retained_intron MGP_AJ_T0058623.1 MGP_AJ_G0026705.1 mouse_genomes_project 2 154095128 154096732 - Trpc4ap protein_coding retained_intron MGP_AJ_T0058624.1 MGP_AJ_G0026705.1 mouse_genomes_project 2 154099783 154120417 - Trpc4ap protein_coding retained_intron MGP_AJ_T0058625.1 MGP_AJ_G0026705.1 mouse_genomes_project 2 154109402 154150400 - Trpc4ap protein_coding retained_intron MGP_AJ_T0058626.1 MGP_AJ_G0026705.1 mouse_genomes_project 2 154122476 154125143 - Trpc4ap protein_coding retained_intron MGP_AJ_T0058627.1 MGP_AJ_G0026705.1 mouse_genomes_project 2 154129727 154150141 - Trpc4ap protein_coding processed_transcript MGP_AJ_T0003892.1 MGP_AJ_G0003478.1 mouse_genomes_project 2 2888256 2893146 + Gm13267 antisense antisense MGP_AJ_T0003893.1 MGP_AJ_G0003478.1 mouse_genomes_project 2 2888346 2891899 + Gm13267 antisense antisense MGP_AJ_T0017913.1 MGP_AJ_G0015468.1 mouse_genomes_project 2 166155247 166216678 + Gm11476 processed_transcript processed_transcript MGP_AJ_T0057583.1 MGP_AJ_G0026438.1 mouse_genomes_project 2 126612161 126691091 - MGP_AJ_P0057583 Anapc1 protein_coding protein_coding MGP_AJ_T0057584.1 MGP_AJ_G0026438.1 mouse_genomes_project 2 126617460 126620200 - Anapc1 protein_coding processed_transcript MGP_AJ_T0057585.1 MGP_AJ_G0026438.1 mouse_genomes_project 2 126619630 126624903 - Anapc1 protein_coding processed_transcript MGP_AJ_T0057586.1 MGP_AJ_G0026438.1 mouse_genomes_project 2 126624432 126629519 - Anapc1 protein_coding processed_transcript MGP_AJ_T0057587.1 MGP_AJ_G0026438.1 mouse_genomes_project 2 126625797 126630697 - Anapc1 protein_coding processed_transcript MGP_AJ_T0057588.1 MGP_AJ_G0026438.1 mouse_genomes_project 2 126630600 126632093 - Anapc1 protein_coding processed_transcript MGP_AJ_T0057589.1 MGP_AJ_G0026438.1 mouse_genomes_project 2 126645102 126691076 - MGP_AJ_P0057589 Anapc1 protein_coding protein_coding MGP_AJ_T0057590.1 MGP_AJ_G0026438.1 mouse_genomes_project 2 126661566 126667023 - Anapc1 protein_coding processed_transcript MGP_AJ_T0057591.1 MGP_AJ_G0026438.1 mouse_genomes_project 2 126663445 126667866 - Anapc1 protein_coding processed_transcript MGP_AJ_T0057592.1 MGP_AJ_G0026438.1 mouse_genomes_project 2 126680820 126691075 - Anapc1 protein_coding processed_transcript MGP_AJ_T0057593.1 MGP_AJ_G0026438.1 mouse_genomes_project 2 126688748 126691054 - MGP_AJ_P0057593 Anapc1 protein_coding protein_coding MGP_AJ_T0099750.1 MGP_AJ_G0037716.1 mouse_genomes_project 2 22173468 22173573 + Gm22572 snRNA snRNA MGP_AJ_T0057874.1 MGP_AJ_G0026504.1 mouse_genomes_project 2 130294978 130299131 - MGP_AJ_P0057874 Pcna protein_coding protein_coding MGP_AJ_T0057875.1 MGP_AJ_G0026504.1 mouse_genomes_project 2 130295693 130298413 - Pcna protein_coding processed_transcript MGP_AJ_T0057876.1 MGP_AJ_G0026504.1 mouse_genomes_project 2 130297145 130298784 - Pcna protein_coding retained_intron MGP_AJ_T0057877.1 MGP_AJ_G0026504.1 mouse_genomes_project 2 130297245 130298419 - Pcna protein_coding retained_intron MGP_AJ_T0007180.1 MGP_AJ_G0005884.1 mouse_genomes_project 2 30658429 30671616 + Gm13530 lincRNA lincRNA MGP_AJ_T0055356.1 MGP_AJ_G0025815.1 mouse_genomes_project 2 70721545 70766336 - MGP_AJ_P0055356 Gpr155 protein_coding protein_coding MGP_AJ_T0055357.1 MGP_AJ_G0025815.1 mouse_genomes_project 2 70721997 70766176 - MGP_AJ_P0055357 Gpr155 protein_coding protein_coding MGP_AJ_T0055358.1 MGP_AJ_G0025815.1 mouse_genomes_project 2 70723029 70766207 - MGP_AJ_P0055358 Gpr155 protein_coding protein_coding MGP_AJ_T0055359.1 MGP_AJ_G0025815.1 mouse_genomes_project 2 70727686 70742277 - MGP_AJ_P0055359 Gpr155 protein_coding protein_coding MGP_AJ_T0055360.1 MGP_AJ_G0025815.1 mouse_genomes_project 2 70730931 70766162 - Gpr155 protein_coding processed_transcript MGP_AJ_T0055361.1 MGP_AJ_G0025815.1 mouse_genomes_project 2 70730931 70766162 - Gpr155 protein_coding retained_intron MGP_AJ_T0055362.1 MGP_AJ_G0025815.1 mouse_genomes_project 2 70742185 70749895 - Gpr155 protein_coding processed_transcript MGP_AJ_T0055363.1 MGP_AJ_G0025815.1 mouse_genomes_project 2 70761169 70766175 - Gpr155 protein_coding retained_intron MGP_AJ_T0013408.1 MGP_AJ_G0011503.1 mouse_genomes_project 2 1025074 1026371 - processed_pseudogene processed_pseudogene MGP_AJ_T0055436.1 MGP_AJ_G0025832.1 mouse_genomes_project 2 72143759 72145921 + MGP_AJ_P0055436 Hoxd1 protein_coding protein_coding MGP_AJ_T0059097.1 MGP_AJ_G0026794.1 mouse_genomes_project 2 162196969 162266310 + Pkig protein_coding retained_intron MGP_AJ_T0059098.1 MGP_AJ_G0026794.1 mouse_genomes_project 2 162196969 162268710 + MGP_AJ_P0059098 Pkig protein_coding protein_coding MGP_AJ_T0059099.1 MGP_AJ_G0026794.1 mouse_genomes_project 2 162196982 162268706 + MGP_AJ_P0059099 Pkig protein_coding protein_coding MGP_AJ_T0059100.1 MGP_AJ_G0026794.1 mouse_genomes_project 2 162196998 162268240 + MGP_AJ_P0059100 Pkig protein_coding protein_coding MGP_AJ_T0059101.1 MGP_AJ_G0026794.1 mouse_genomes_project 2 162197041 162263750 + MGP_AJ_P0059101 Pkig protein_coding protein_coding MGP_AJ_T0059102.1 MGP_AJ_G0026794.1 mouse_genomes_project 2 162197060 162268343 + MGP_AJ_P0059102 Pkig protein_coding protein_coding MGP_AJ_T0059103.1 MGP_AJ_G0026794.1 mouse_genomes_project 2 162197063 162268070 + MGP_AJ_P0059103 Pkig protein_coding protein_coding MGP_AJ_T0059104.1 MGP_AJ_G0026794.1 mouse_genomes_project 2 162200083 162268025 + MGP_AJ_P0059104 Pkig protein_coding protein_coding MGP_AJ_T0059105.1 MGP_AJ_G0026794.1 mouse_genomes_project 2 162233800 162268704 + MGP_AJ_P0059105 Pkig protein_coding protein_coding MGP_AJ_T0004158.1 MGP_AJ_G0003673.1 mouse_genomes_project 2 162659736 162664453 + Gm11455 antisense antisense MGP_AJ_T0054732.1 MGP_AJ_G0025698.1 mouse_genomes_project 2 46787440 46881555 + MGP_AJ_P0054732 Epc2 protein_coding protein_coding MGP_AJ_T0054733.1 MGP_AJ_G0025698.1 mouse_genomes_project 2 46858481 46866688 + MGP_AJ_P0054733 Epc2 protein_coding protein_coding MGP_AJ_T0001070.1 MGP_AJ_G0001001.1 mouse_genomes_project 2 35324933 35327800 - TEC TEC MGP_AJ_T0013468.1 MGP_AJ_G0011563.1 mouse_genomes_project 2 21625257 21625904 + processed_pseudogene processed_pseudogene MGP_AJ_T0099752.1 MGP_AJ_G0037718.1 mouse_genomes_project 2 24577292 24582153 - Gm25541 snRNA snRNA MGP_AJ_T0013595.1 MGP_AJ_G0011690.1 mouse_genomes_project 2 69906469 69906811 - processed_pseudogene processed_pseudogene MGP_AJ_T0055744.1 MGP_AJ_G0025896.1 mouse_genomes_project 2 82511994 82515696 + MGP_AJ_P0055744 Aplnr protein_coding protein_coding MGP_AJ_T0055745.1 MGP_AJ_G0025896.1 mouse_genomes_project 2 82513162 82515694 + MGP_AJ_P0055745 Aplnr protein_coding protein_coding MGP_AJ_T0052583.1 MGP_AJ_G0025325.1 mouse_genomes_project 2 8783016 8784095 - Fbxo18 protein_coding processed_transcript MGP_AJ_T0052584.1 MGP_AJ_G0025325.1 mouse_genomes_project 2 8783018 8819597 - MGP_AJ_P0052584 Fbxo18 protein_coding protein_coding MGP_AJ_T0052585.1 MGP_AJ_G0025325.1 mouse_genomes_project 2 8784110 8789350 - Fbxo18 protein_coding retained_intron MGP_AJ_T0052586.1 MGP_AJ_G0025325.1 mouse_genomes_project 2 8787970 8819522 - Fbxo18 protein_coding retained_intron MGP_AJ_T0052587.1 MGP_AJ_G0025325.1 mouse_genomes_project 2 8788557 8799581 - MGP_AJ_P0052587 Fbxo18 protein_coding protein_coding MGP_AJ_T0052588.1 MGP_AJ_G0025325.1 mouse_genomes_project 2 8789575 8791887 - Fbxo18 protein_coding retained_intron MGP_AJ_T0052589.1 MGP_AJ_G0025325.1 mouse_genomes_project 2 8791796 8800498 - Fbxo18 protein_coding retained_intron MGP_AJ_T0052590.1 MGP_AJ_G0025325.1 mouse_genomes_project 2 8804956 8819565 - Fbxo18 protein_coding processed_transcript MGP_AJ_T0052591.1 MGP_AJ_G0025325.1 mouse_genomes_project 2 8806249 8819563 - Fbxo18 protein_coding processed_transcript MGP_AJ_T0052592.1 MGP_AJ_G0025325.1 mouse_genomes_project 2 8809519 8819522 - Fbxo18 protein_coding processed_transcript MGP_AJ_T0059782.1 MGP_AJ_G0026968.1 mouse_genomes_project 2 179569989 179589347 + MGP_AJ_P0059782 Slc17a9 protein_coding protein_coding MGP_AJ_T0059783.1 MGP_AJ_G0026968.1 mouse_genomes_project 2 179570086 179589356 + MGP_AJ_P0059783 Slc17a9 protein_coding unknown_likely_coding MGP_AJ_T0059784.1 MGP_AJ_G0026968.1 mouse_genomes_project 2 179570105 179579913 + Slc17a9 protein_coding retained_intron MGP_AJ_T0059785.1 MGP_AJ_G0026968.1 mouse_genomes_project 2 179570126 179583033 + Slc17a9 protein_coding processed_transcript MGP_AJ_T0059786.1 MGP_AJ_G0026968.1 mouse_genomes_project 2 179582338 179588405 + Slc17a9 protein_coding processed_transcript MGP_AJ_T0059787.1 MGP_AJ_G0026968.1 mouse_genomes_project 2 179584194 179588483 + Slc17a9 protein_coding retained_intron MGP_AJ_T0055752.1 MGP_AJ_G0025902.1 mouse_genomes_project 2 82850468 82886025 - MGP_AJ_P0055752 4833423E24Rik protein_coding protein_coding MGP_AJ_T0007202.1 MGP_AJ_G0005901.1 mouse_genomes_project 2 45379765 45779639 - lincRNA lincRNA MGP_AJ_T0102494.1 MGP_AJ_G0040236.1 mouse_genomes_project 2 85384408 85384853 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0010488.1 MGP_AJ_G0008610.1 mouse_genomes_project 2 179016805 179016874 - Mir7005 miRNA miRNA MGP_AJ_T0055588.1 MGP_AJ_G0025861.1 mouse_genomes_project 2 77871201 77908309 - MGP_AJ_P0055588 Frzb protein_coding protein_coding MGP_AJ_T0055589.1 MGP_AJ_G0025861.1 mouse_genomes_project 2 77872344 77898326 - Frzb protein_coding processed_transcript MGP_AJ_T0055028.1 MGP_AJ_G0025752.1 mouse_genomes_project 2 62205050 62207687 - Grb14 protein_coding processed_transcript MGP_AJ_T0055029.1 MGP_AJ_G0025752.1 mouse_genomes_project 2 62205050 62209983 - MGP_AJ_P0055029 Grb14 protein_coding protein_coding MGP_AJ_T0055030.1 MGP_AJ_G0025752.1 mouse_genomes_project 2 62205050 62316988 - MGP_AJ_P0055030 Grb14 protein_coding protein_coding MGP_AJ_T0055031.1 MGP_AJ_G0025752.1 mouse_genomes_project 2 62205050 62209908 - MGP_AJ_P0055031 Grb14 protein_coding protein_coding MGP_AJ_T0055032.1 MGP_AJ_G0025752.1 mouse_genomes_project 2 62221951 62227669 - Grb14 protein_coding processed_transcript MGP_AJ_T0055033.1 MGP_AJ_G0025752.1 mouse_genomes_project 2 62223417 62272003 - MGP_AJ_P0055033 Grb14 protein_coding protein_coding MGP_AJ_T0055034.1 MGP_AJ_G0025752.1 mouse_genomes_project 2 62229518 62271980 - Grb14 protein_coding processed_transcript MGP_AJ_T0055035.1 MGP_AJ_G0025752.1 mouse_genomes_project 2 62316873 62319202 - Grb14 protein_coding processed_transcript MGP_AJ_T0057348.1 MGP_AJ_G0026382.1 mouse_genomes_project 2 120646147 120657171 + MGP_AJ_P0057348 Bloc1s6 protein_coding protein_coding MGP_AJ_T0057349.1 MGP_AJ_G0026382.1 mouse_genomes_project 2 120646157 120653675 + Bloc1s6 protein_coding processed_transcript MGP_AJ_T0057350.1 MGP_AJ_G0026382.1 mouse_genomes_project 2 120646163 120655794 + Bloc1s6 protein_coding processed_transcript MGP_AJ_T0057351.1 MGP_AJ_G0026382.1 mouse_genomes_project 2 120646171 120646801 + Bloc1s6 protein_coding processed_transcript MGP_AJ_T0057352.1 MGP_AJ_G0026382.1 mouse_genomes_project 2 120646174 120653741 + Bloc1s6 protein_coding processed_transcript MGP_AJ_T0057353.1 MGP_AJ_G0026382.1 mouse_genomes_project 2 120646203 120654701 + Bloc1s6 protein_coding processed_transcript MGP_AJ_T0053215.1 MGP_AJ_G0025432.1 mouse_genomes_project 2 22550375 22558562 - MGP_AJ_P0053215 Mamdc4 protein_coding protein_coding MGP_AJ_T0053216.1 MGP_AJ_G0025432.1 mouse_genomes_project 2 22550397 22558604 - MGP_AJ_P0053216 Mamdc4 protein_coding protein_coding MGP_AJ_T0053217.1 MGP_AJ_G0025432.1 mouse_genomes_project 2 22550570 22557500 - MGP_AJ_P0053217 Mamdc4 protein_coding protein_coding MGP_AJ_T0053218.1 MGP_AJ_G0025432.1 mouse_genomes_project 2 22555703 22556731 - Mamdc4 protein_coding processed_transcript MGP_AJ_T0053219.1 MGP_AJ_G0025432.1 mouse_genomes_project 2 22555747 22556361 - Mamdc4 protein_coding processed_transcript MGP_AJ_T0053220.1 MGP_AJ_G0025432.1 mouse_genomes_project 2 22557419 22562076 - Mamdc4 protein_coding processed_transcript MGP_AJ_T0017739.1 MGP_AJ_G0015376.1 mouse_genomes_project 2 23369865 23389310 + Gm13562 processed_transcript processed_transcript MGP_AJ_T0017740.1 MGP_AJ_G0015376.1 mouse_genomes_project 2 23382824 23387091 + Gm13562 processed_transcript processed_transcript MGP_AJ_T0007352.1 MGP_AJ_G0006024.1 mouse_genomes_project 2 144636442 144640401 + 4933406D12Rik lincRNA lincRNA MGP_AJ_T0013657.1 MGP_AJ_G0011752.1 mouse_genomes_project 2 86203050 86211918 + processed_pseudogene processed_pseudogene MGP_AJ_T0004035.1 MGP_AJ_G0003584.1 mouse_genomes_project 2 86585294 86592276 - Gm13763 antisense antisense MGP_AJ_T0013835.1 MGP_AJ_G0011930.1 mouse_genomes_project 2 153998002 153998293 + processed_pseudogene processed_pseudogene MGP_AJ_T0010464.1 MGP_AJ_G0008586.1 mouse_genomes_project 2 150245442 150245531 - Mir1953 miRNA miRNA MGP_AJ_T0059869.1 MGP_AJ_G0026985.1 mouse_genomes_project 2 180171059 180208250 + MGP_AJ_P0059869 Rtel1 protein_coding protein_coding MGP_AJ_T0059870.1 MGP_AJ_G0026985.1 mouse_genomes_project 2 180171073 180199092 + Rtel1 protein_coding retained_intron MGP_AJ_T0059871.1 MGP_AJ_G0026985.1 mouse_genomes_project 2 180171082 180208212 + Rtel1 protein_coding retained_intron MGP_AJ_T0059872.1 MGP_AJ_G0026985.1 mouse_genomes_project 2 180171082 180208250 + MGP_AJ_P0059872 Rtel1 protein_coding protein_coding MGP_AJ_T0059873.1 MGP_AJ_G0026985.1 mouse_genomes_project 2 180171105 180208212 + MGP_AJ_P0059873 Rtel1 protein_coding protein_coding MGP_AJ_T0059874.1 MGP_AJ_G0026985.1 mouse_genomes_project 2 180171105 180208250 + MGP_AJ_P0059874 Rtel1 protein_coding protein_coding MGP_AJ_T0059875.1 MGP_AJ_G0026985.1 mouse_genomes_project 2 180171105 180208250 + MGP_AJ_P0059875 Rtel1 protein_coding protein_coding MGP_AJ_T0059876.1 MGP_AJ_G0026985.1 mouse_genomes_project 2 180171283 180175015 + MGP_AJ_P0059876 Rtel1 protein_coding protein_coding MGP_AJ_T0059877.1 MGP_AJ_G0026985.1 mouse_genomes_project 2 180179935 180208250 + MGP_AJ_P0059877 Rtel1 protein_coding protein_coding MGP_AJ_T0059878.1 MGP_AJ_G0026985.1 mouse_genomes_project 2 180187994 180198682 + MGP_AJ_P0059878 Rtel1 protein_coding nonsense_mediated_decay MGP_AJ_T0059879.1 MGP_AJ_G0026985.1 mouse_genomes_project 2 180191163 180198665 + Rtel1 protein_coding retained_intron MGP_AJ_T0059880.1 MGP_AJ_G0026985.1 mouse_genomes_project 2 180201088 180201589 + Rtel1 protein_coding retained_intron MGP_AJ_T0059881.1 MGP_AJ_G0026985.1 mouse_genomes_project 2 180201651 180203697 + Rtel1 protein_coding retained_intron MGP_AJ_T0059882.1 MGP_AJ_G0026985.1 mouse_genomes_project 2 180201761 180202789 + Rtel1 protein_coding retained_intron MGP_AJ_T0059883.1 MGP_AJ_G0026985.1 mouse_genomes_project 2 180203715 180207186 + Rtel1 protein_coding retained_intron MGP_AJ_T0059884.1 MGP_AJ_G0026985.1 mouse_genomes_project 2 180206033 180207447 + Rtel1 protein_coding processed_transcript MGP_AJ_T0059885.1 MGP_AJ_G0026985.1 mouse_genomes_project 2 180206836 180207651 + Rtel1 protein_coding retained_intron MGP_AJ_T0059886.1 MGP_AJ_G0026985.1 mouse_genomes_project 2 180207327 180208249 + Rtel1 protein_coding processed_transcript MGP_AJ_T0059887.1 MGP_AJ_G0026985.1 mouse_genomes_project 2 180207398 180208248 + MGP_AJ_P0059887 Rtel1 protein_coding protein_coding MGP_AJ_T0059888.1 MGP_AJ_G0026985.1 mouse_genomes_project 2 180207603 180208250 + MGP_AJ_P0059888 Rtel1 protein_coding protein_coding MGP_AJ_T0059889.1 MGP_AJ_G0026985.1 mouse_genomes_project 2 180207603 180208250 + MGP_AJ_P0059889 Rtel1 protein_coding protein_coding MGP_AJ_T0059063.1 MGP_AJ_G0026785.1 mouse_genomes_project 2 161745125 161867701 + MGP_AJ_P0059063 Tox2 protein_coding protein_coding MGP_AJ_T0059064.1 MGP_AJ_G0026785.1 mouse_genomes_project 2 161746553 161818078 + MGP_AJ_P0059064 Tox2 protein_coding protein_coding MGP_AJ_T0059065.1 MGP_AJ_G0026785.1 mouse_genomes_project 2 161767464 161866833 + MGP_AJ_P0059065 Tox2 protein_coding protein_coding MGP_AJ_T0059066.1 MGP_AJ_G0026785.1 mouse_genomes_project 2 161767555 161866633 + MGP_AJ_P0059066 Tox2 protein_coding protein_coding MGP_AJ_T0059067.1 MGP_AJ_G0026785.1 mouse_genomes_project 2 161863908 161866633 + MGP_AJ_P0059067 Tox2 protein_coding protein_coding MGP_AJ_T0003916.1 MGP_AJ_G0003499.1 mouse_genomes_project 2 22145655 22148214 - Gm38287 antisense antisense MGP_AJ_T0053027.1 MGP_AJ_G0025397.1 mouse_genomes_project 2 22048650 22058109 - MGP_AJ_P0053027 Noxa1 protein_coding protein_coding MGP_AJ_T0053028.1 MGP_AJ_G0025397.1 mouse_genomes_project 2 22048650 22058091 - MGP_AJ_P0053028 Noxa1 protein_coding protein_coding MGP_AJ_T0013490.1 MGP_AJ_G0011585.1 mouse_genomes_project 2 32686251 32686773 - processed_pseudogene processed_pseudogene MGP_AJ_T0055862.1 MGP_AJ_G0025999.1 mouse_genomes_project 2 85415735 85416668 + MGP_AJ_P0055862 Olfr1152 protein_coding protein_coding MGP_AJ_T0058517.1 MGP_AJ_G0026683.1 mouse_genomes_project 2 152947004 152949898 + 1700003F12Rik protein_coding retained_intron MGP_AJ_T0058519.1 MGP_AJ_G0026683.1 mouse_genomes_project 2 152948975 152950083 + MGP_AJ_P0058519 1700003F12Rik protein_coding protein_coding MGP_AJ_T0058520.1 MGP_AJ_G0026683.1 mouse_genomes_project 2 152949014 152950083 + MGP_AJ_P0058520 1700003F12Rik protein_coding protein_coding MGP_AJ_T0007186.1 MGP_AJ_G0005889.1 mouse_genomes_project 2 31282410 31296475 - Gm38389 lincRNA lincRNA MGP_AJ_T0007229.1 MGP_AJ_G0005926.1 mouse_genomes_project 2 70043603 70070428 + 8430437L04Rik lincRNA lincRNA MGP_AJ_T0058288.1 MGP_AJ_G0026610.1 mouse_genomes_project 2 149984225 149989524 + MGP_AJ_P0058288 Tmem74b protein_coding protein_coding MGP_AJ_T0058289.1 MGP_AJ_G0026610.1 mouse_genomes_project 2 149984528 149994373 + MGP_AJ_P0058289 Tmem74b protein_coding protein_coding MGP_AJ_T0059062.1 MGP_AJ_G0026784.1 mouse_genomes_project 2 161626134 161626956 - MGP_AJ_P0059062 Gtsf1l protein_coding protein_coding MGP_AJ_T0052319.1 MGP_AJ_G0025280.1 mouse_genomes_project 2 284998 288693 - MGP_AJ_P0052319 Rpp38 protein_coding protein_coding MGP_AJ_T0010351.1 MGP_AJ_G0008473.1 mouse_genomes_project 2 7530451 7530553 + Gm24342 miRNA miRNA MGP_AJ_T0013781.1 MGP_AJ_G0011876.1 mouse_genomes_project 2 138171291 138171729 - processed_pseudogene processed_pseudogene MGP_AJ_T0058403.1 MGP_AJ_G0026652.1 mouse_genomes_project 2 151373064 151390106 + Ccm2l protein_coding processed_transcript MGP_AJ_T0058404.1 MGP_AJ_G0026652.1 mouse_genomes_project 2 151373093 151378253 + Ccm2l protein_coding processed_transcript MGP_AJ_T0058405.1 MGP_AJ_G0026652.1 mouse_genomes_project 2 151373107 151378082 + MGP_AJ_P0058405 Ccm2l protein_coding protein_coding MGP_AJ_T0058406.1 MGP_AJ_G0026652.1 mouse_genomes_project 2 151373111 151390106 + MGP_AJ_P0058406 Ccm2l protein_coding protein_coding MGP_AJ_T0058407.1 MGP_AJ_G0026652.1 mouse_genomes_project 2 151373116 151390106 + MGP_AJ_P0058407 Ccm2l protein_coding unknown_likely_coding MGP_AJ_T0003986.1 MGP_AJ_G0003550.1 mouse_genomes_project 2 62159493 62159901 + antisense antisense MGP_AJ_T0004134.1 MGP_AJ_G0003654.1 mouse_genomes_project 2 154002542 154012530 - Acss2os antisense antisense MGP_AJ_T0013493.1 MGP_AJ_G0011588.1 mouse_genomes_project 2 33959612 33960185 + processed_pseudogene processed_pseudogene MGP_AJ_T0054842.1 MGP_AJ_G0025721.1 mouse_genomes_project 2 55330810 55379353 + MGP_AJ_P0054842 Galnt5 protein_coding protein_coding MGP_AJ_T0054843.1 MGP_AJ_G0025721.1 mouse_genomes_project 2 55330810 55371471 + MGP_AJ_P0054843 Galnt5 protein_coding protein_coding MGP_AJ_T0013887.1 MGP_AJ_G0011982.1 mouse_genomes_project 2 180142806 180143594 + processed_pseudogene processed_pseudogene MGP_AJ_T0099791.1 MGP_AJ_G0037757.1 mouse_genomes_project 2 134103200 134103301 - Gm26227 snRNA snRNA MGP_AJ_T0010425.1 MGP_AJ_G0008547.1 mouse_genomes_project 2 78093261 78093347 - Mir684-1 miRNA miRNA MGP_AJ_T0053019.1 MGP_AJ_G0025396.1 mouse_genomes_project 2 22043287 22045099 + Entpd8 protein_coding retained_intron MGP_AJ_T0053020.1 MGP_AJ_G0025396.1 mouse_genomes_project 2 22043305 22048700 + MGP_AJ_P0053020 Entpd8 protein_coding protein_coding MGP_AJ_T0053021.1 MGP_AJ_G0025396.1 mouse_genomes_project 2 22043308 22048700 + MGP_AJ_P0053021 Entpd8 protein_coding protein_coding MGP_AJ_T0053022.1 MGP_AJ_G0025396.1 mouse_genomes_project 2 22043492 22048699 + Entpd8 protein_coding retained_intron MGP_AJ_T0053023.1 MGP_AJ_G0025396.1 mouse_genomes_project 2 22044794 22048136 + Entpd8 protein_coding retained_intron MGP_AJ_T0053024.1 MGP_AJ_G0025396.1 mouse_genomes_project 2 22044801 22048700 + MGP_AJ_P0053024 Entpd8 protein_coding protein_coding MGP_AJ_T0053025.1 MGP_AJ_G0025396.1 mouse_genomes_project 2 22045016 22046718 + MGP_AJ_P0053025 Entpd8 protein_coding nonsense_mediated_decay MGP_AJ_T0053026.1 MGP_AJ_G0025396.1 mouse_genomes_project 2 22047660 22048558 + Entpd8 protein_coding retained_intron MGP_AJ_T0056849.1 MGP_AJ_G0026285.1 mouse_genomes_project 2 116587818 116610997 + MGP_AJ_P0056849 Knstrn protein_coding protein_coding MGP_AJ_T0056850.1 MGP_AJ_G0026285.1 mouse_genomes_project 2 116588047 116607474 + MGP_AJ_P0056850 Knstrn protein_coding nonsense_mediated_decay MGP_AJ_T0056851.1 MGP_AJ_G0026285.1 mouse_genomes_project 2 116588047 116607542 + MGP_AJ_P0056851 Knstrn protein_coding nonsense_mediated_decay MGP_AJ_T0056852.1 MGP_AJ_G0026285.1 mouse_genomes_project 2 116588092 116604311 + MGP_AJ_P0056852 Knstrn protein_coding protein_coding MGP_AJ_T0056853.1 MGP_AJ_G0026285.1 mouse_genomes_project 2 116588111 116607361 + MGP_AJ_P0056853 Knstrn protein_coding nonsense_mediated_decay MGP_AJ_T0056854.1 MGP_AJ_G0026285.1 mouse_genomes_project 2 116588241 116607424 + MGP_AJ_P0056854 Knstrn protein_coding protein_coding MGP_AJ_T0056855.1 MGP_AJ_G0026285.1 mouse_genomes_project 2 116604902 116610447 + MGP_AJ_P0056855 Knstrn protein_coding nonsense_mediated_decay MGP_AJ_T0056856.1 MGP_AJ_G0026285.1 mouse_genomes_project 2 116607367 116627061 + MGP_AJ_P0056856 Knstrn protein_coding nonsense_mediated_decay MGP_AJ_T0101765.1 MGP_AJ_G0039688.1 mouse_genomes_project 2 21432858 21433444 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0055901.1 MGP_AJ_G0026035.1 mouse_genomes_project 2 86583722 86584658 - MGP_AJ_P0055901 Olfr1211 protein_coding protein_coding MGP_AJ_T0011504.1 MGP_AJ_G0009626.1 mouse_genomes_project 2 71213247 71213414 - Gm27421 misc_RNA misc_RNA MGP_AJ_T0013454.1 MGP_AJ_G0011549.1 mouse_genomes_project 2 17064049 17064848 - processed_pseudogene processed_pseudogene MGP_AJ_T0010447.1 MGP_AJ_G0008569.1 mouse_genomes_project 2 117836056 117836119 + Mir7665 miRNA miRNA MGP_AJ_T0013658.1 MGP_AJ_G0011753.1 mouse_genomes_project 2 86833300 86834107 - processed_pseudogene processed_pseudogene MGP_AJ_T0007319.1 MGP_AJ_G0005997.1 mouse_genomes_project 2 116037692 116043647 - A930104D05Rik lincRNA lincRNA MGP_AJ_T0007320.1 MGP_AJ_G0005997.1 mouse_genomes_project 2 116040482 116043479 - A930104D05Rik lincRNA lincRNA MGP_AJ_T0057602.1 MGP_AJ_G0026441.1 mouse_genomes_project 2 126869282 126903926 + MGP_AJ_P0057602 Fbln7 protein_coding protein_coding MGP_AJ_T0057603.1 MGP_AJ_G0026441.1 mouse_genomes_project 2 126870231 126903922 + MGP_AJ_P0057603 Fbln7 protein_coding protein_coding MGP_AJ_T0017869.1 MGP_AJ_G0015448.1 mouse_genomes_project 2 128920516 128953606 - A730017L22Rik processed_transcript processed_transcript MGP_AJ_T0017870.1 MGP_AJ_G0015448.1 mouse_genomes_project 2 128926869 128953566 - A730017L22Rik processed_transcript processed_transcript MGP_AJ_T0017871.1 MGP_AJ_G0015448.1 mouse_genomes_project 2 128930780 128953589 - A730017L22Rik processed_transcript processed_transcript MGP_AJ_T0059407.1 MGP_AJ_G0026873.1 mouse_genomes_project 2 165619358 165639498 + MGP_AJ_P0059407 Ddx27 protein_coding protein_coding MGP_AJ_T0059408.1 MGP_AJ_G0026873.1 mouse_genomes_project 2 165619475 165629909 + MGP_AJ_P0059408 Ddx27 protein_coding protein_coding MGP_AJ_T0059409.1 MGP_AJ_G0026873.1 mouse_genomes_project 2 165619475 165628629 + MGP_AJ_P0059409 Ddx27 protein_coding protein_coding MGP_AJ_T0059410.1 MGP_AJ_G0026873.1 mouse_genomes_project 2 165630296 165631958 + Ddx27 protein_coding retained_intron MGP_AJ_T0059411.1 MGP_AJ_G0026873.1 mouse_genomes_project 2 165631637 165632386 + Ddx27 protein_coding retained_intron MGP_AJ_T0059412.1 MGP_AJ_G0026873.1 mouse_genomes_project 2 165638397 165639454 + Ddx27 protein_coding retained_intron MGP_AJ_T0010362.1 MGP_AJ_G0008484.1 mouse_genomes_project 2 7536587 7536683 + Mir669o miRNA miRNA MGP_AJ_T0010460.1 MGP_AJ_G0008582.1 mouse_genomes_project 2 136930375 136930454 + Mir1952 miRNA miRNA MGP_AJ_T0055801.1 MGP_AJ_G0025949.1 mouse_genomes_project 2 84096822 84097755 - MGP_AJ_P0055801 Olfr1086 protein_coding protein_coding MGP_AJ_T0055945.1 MGP_AJ_G0026068.1 mouse_genomes_project 2 87342442 87343476 - MGP_AJ_P0055945 Olfr1252 protein_coding protein_coding MGP_AJ_T0007279.1 MGP_AJ_G0005965.1 mouse_genomes_project 2 94626529 94713063 - 4930445B16Rik lincRNA lincRNA MGP_AJ_T0056553.1 MGP_AJ_G0026188.1 mouse_genomes_project 2 102794238 102842507 + MGP_AJ_P0056553 Wt1 protein_coding protein_coding MGP_AJ_T0056554.1 MGP_AJ_G0026188.1 mouse_genomes_project 2 102794705 102840442 + MGP_AJ_P0056554 Wt1 protein_coding protein_coding MGP_AJ_T0056555.1 MGP_AJ_G0026188.1 mouse_genomes_project 2 102794710 102840444 + MGP_AJ_P0056555 Wt1 protein_coding protein_coding MGP_AJ_T0056556.1 MGP_AJ_G0026188.1 mouse_genomes_project 2 102794710 102840365 + MGP_AJ_P0056556 Wt1 protein_coding protein_coding MGP_AJ_T0056557.1 MGP_AJ_G0026188.1 mouse_genomes_project 2 102798513 102801669 + Wt1 protein_coding retained_intron MGP_AJ_T0056558.1 MGP_AJ_G0026188.1 mouse_genomes_project 2 102798596 102842507 + MGP_AJ_P0056558 Wt1 protein_coding protein_coding MGP_AJ_T0056559.1 MGP_AJ_G0026188.1 mouse_genomes_project 2 102798596 102842511 + MGP_AJ_P0056559 Wt1 protein_coding protein_coding MGP_AJ_T0056560.1 MGP_AJ_G0026188.1 mouse_genomes_project 2 102830923 102838111 + Wt1 protein_coding retained_intron MGP_AJ_T0001038.1 MGP_AJ_G0000969.1 mouse_genomes_project 2 10121444 10125423 + TEC TEC MGP_AJ_T0059779.1 MGP_AJ_G0026967.1 mouse_genomes_project 2 179555587 179563321 + MGP_AJ_P0059779 Gid8 protein_coding protein_coding MGP_AJ_T0059780.1 MGP_AJ_G0026967.1 mouse_genomes_project 2 179557157 179560210 + Gid8 protein_coding processed_transcript MGP_AJ_T0059781.1 MGP_AJ_G0026967.1 mouse_genomes_project 2 179558016 179563318 + MGP_AJ_P0059781 Gid8 protein_coding protein_coding MGP_AJ_T0059847.1 MGP_AJ_G0026978.1 mouse_genomes_project 2 180037624 180039149 + MGP_AJ_P0059847 Ppdpf protein_coding protein_coding MGP_AJ_T0059848.1 MGP_AJ_G0026978.1 mouse_genomes_project 2 180037673 180039119 + Ppdpf protein_coding retained_intron MGP_AJ_T0059849.1 MGP_AJ_G0026978.1 mouse_genomes_project 2 180037713 180038882 + MGP_AJ_P0059849 Ppdpf protein_coding protein_coding MGP_AJ_T0059850.1 MGP_AJ_G0026978.1 mouse_genomes_project 2 180037724 180038882 + Ppdpf protein_coding retained_intron MGP_AJ_T0059851.1 MGP_AJ_G0026978.1 mouse_genomes_project 2 180037912 180038882 + Ppdpf protein_coding retained_intron MGP_AJ_T0059852.1 MGP_AJ_G0026978.1 mouse_genomes_project 2 180038290 180038882 + Ppdpf protein_coding retained_intron MGP_AJ_T0055972.1 MGP_AJ_G0026083.1 mouse_genomes_project 2 87678484 87707702 - MGP_AJ_P0055972 protein_coding protein_coding MGP_AJ_T0101046.1 MGP_AJ_G0039012.1 mouse_genomes_project 2 78307834 78307965 + Gm22652 snoRNA snoRNA MGP_AJ_T0013810.1 MGP_AJ_G0011905.1 mouse_genomes_project 2 145789674 145790113 + processed_pseudogene processed_pseudogene MGP_AJ_T0053604.1 MGP_AJ_G0025509.1 mouse_genomes_project 2 25878931 25897000 - MGP_AJ_P0053604 Gtf3c4 protein_coding protein_coding MGP_AJ_T0053605.1 MGP_AJ_G0025509.1 mouse_genomes_project 2 25878937 25896926 - MGP_AJ_P0053605 Gtf3c4 protein_coding protein_coding MGP_AJ_T0053606.1 MGP_AJ_G0025509.1 mouse_genomes_project 2 25891843 25896926 - Gtf3c4 protein_coding processed_transcript MGP_AJ_T0053607.1 MGP_AJ_G0025509.1 mouse_genomes_project 2 25891943 25896992 - Gtf3c4 protein_coding processed_transcript MGP_AJ_T0011498.1 MGP_AJ_G0009620.1 mouse_genomes_project 2 42392557 42392634 + Gm27645 misc_RNA misc_RNA MGP_AJ_T0059199.1 MGP_AJ_G0026836.1 mouse_genomes_project 2 163268107 163282861 - MGP_AJ_P0059199 Wfdc3 protein_coding protein_coding MGP_AJ_T0059200.1 MGP_AJ_G0026836.1 mouse_genomes_project 2 163268107 163280242 - MGP_AJ_P0059200 Wfdc3 protein_coding protein_coding MGP_AJ_T0059201.1 MGP_AJ_G0026836.1 mouse_genomes_project 2 163280494 163282861 - Wfdc3 protein_coding processed_transcript MGP_AJ_T0001041.1 MGP_AJ_G0000972.1 mouse_genomes_project 2 10326274 10327963 - TEC TEC MGP_AJ_T0054355.1 MGP_AJ_G0025618.1 mouse_genomes_project 2 31967896 31988118 - MGP_AJ_P0054355 Rabepk protein_coding protein_coding MGP_AJ_T0054356.1 MGP_AJ_G0025618.1 mouse_genomes_project 2 31967916 31988268 - MGP_AJ_P0054356 Rabepk protein_coding protein_coding MGP_AJ_T0054357.1 MGP_AJ_G0025618.1 mouse_genomes_project 2 31968107 31983808 - MGP_AJ_P0054357 Rabepk protein_coding nonsense_mediated_decay MGP_AJ_T0054358.1 MGP_AJ_G0025618.1 mouse_genomes_project 2 31973194 31988364 - MGP_AJ_P0054358 Rabepk protein_coding nonsense_mediated_decay MGP_AJ_T0054359.1 MGP_AJ_G0025618.1 mouse_genomes_project 2 31973586 31988401 - MGP_AJ_P0054359 Rabepk protein_coding nonsense_mediated_decay MGP_AJ_T0054360.1 MGP_AJ_G0025618.1 mouse_genomes_project 2 31974058 31988254 - Rabepk protein_coding retained_intron MGP_AJ_T0055226.1 MGP_AJ_G0025792.1 mouse_genomes_project 2 67967279 68018602 + MGP_AJ_P0055226 Gorasp2 protein_coding protein_coding MGP_AJ_T0055227.1 MGP_AJ_G0025792.1 mouse_genomes_project 2 67967279 67997486 + MGP_AJ_P0055227 Gorasp2 protein_coding protein_coding MGP_AJ_T0055228.1 MGP_AJ_G0025792.1 mouse_genomes_project 2 67967279 67997468 + MGP_AJ_P0055228 Gorasp2 protein_coding protein_coding MGP_AJ_T0055229.1 MGP_AJ_G0025792.1 mouse_genomes_project 2 67967293 67995103 + MGP_AJ_P0055229 Gorasp2 protein_coding protein_coding MGP_AJ_T0055230.1 MGP_AJ_G0025792.1 mouse_genomes_project 2 67967903 67983693 + Gorasp2 protein_coding processed_transcript MGP_AJ_T0055231.1 MGP_AJ_G0025792.1 mouse_genomes_project 2 67993555 67997464 + Gorasp2 protein_coding processed_transcript MGP_AJ_T0056595.1 MGP_AJ_G0026193.1 mouse_genomes_project 2 103584942 103639243 + MGP_AJ_P0056595 protein_coding protein_coding MGP_AJ_T0054089.1 MGP_AJ_G0025579.1 mouse_genomes_project 2 29451004 29497761 - MGP_AJ_P0054089 Dnm1 protein_coding nonsense_mediated_decay MGP_AJ_T0054090.1 MGP_AJ_G0025579.1 mouse_genomes_project 2 29451004 29497780 - MGP_AJ_P0054090 Dnm1 protein_coding protein_coding MGP_AJ_T0054091.1 MGP_AJ_G0025579.1 mouse_genomes_project 2 29451004 29497741 - MGP_AJ_P0054091 Dnm1 protein_coding protein_coding MGP_AJ_T0054092.1 MGP_AJ_G0025579.1 mouse_genomes_project 2 29451004 29497816 - MGP_AJ_P0054092 Dnm1 protein_coding protein_coding MGP_AJ_T0054093.1 MGP_AJ_G0025579.1 mouse_genomes_project 2 29451004 29497762 - MGP_AJ_P0054093 Dnm1 protein_coding protein_coding MGP_AJ_T0054094.1 MGP_AJ_G0025579.1 mouse_genomes_project 2 29451004 29497768 - MGP_AJ_P0054094 Dnm1 protein_coding protein_coding MGP_AJ_T0054095.1 MGP_AJ_G0025579.1 mouse_genomes_project 2 29451011 29497712 - MGP_AJ_P0054095 Dnm1 protein_coding protein_coding MGP_AJ_T0054096.1 MGP_AJ_G0025579.1 mouse_genomes_project 2 29451030 29463085 - MGP_AJ_P0054096 Dnm1 protein_coding nonsense_mediated_decay MGP_AJ_T0054097.1 MGP_AJ_G0025579.1 mouse_genomes_project 2 29451374 29497748 - MGP_AJ_P0054097 Dnm1 protein_coding protein_coding MGP_AJ_T0054098.1 MGP_AJ_G0025579.1 mouse_genomes_project 2 29451457 29453169 - Dnm1 protein_coding retained_intron MGP_AJ_T0054099.1 MGP_AJ_G0025579.1 mouse_genomes_project 2 29452008 29455457 - MGP_AJ_P0054099 Dnm1 protein_coding protein_coding MGP_AJ_T0054100.1 MGP_AJ_G0025579.1 mouse_genomes_project 2 29452012 29497780 - MGP_AJ_P0054100 Dnm1 protein_coding protein_coding MGP_AJ_T0054101.1 MGP_AJ_G0025579.1 mouse_genomes_project 2 29452383 29455427 - MGP_AJ_P0054101 Dnm1 protein_coding protein_coding MGP_AJ_T0054102.1 MGP_AJ_G0025579.1 mouse_genomes_project 2 29452796 29455423 - MGP_AJ_P0054102 Dnm1 protein_coding nonsense_mediated_decay MGP_AJ_T0054103.1 MGP_AJ_G0025579.1 mouse_genomes_project 2 29452999 29497687 - MGP_AJ_P0054103 Dnm1 protein_coding unknown_likely_coding MGP_AJ_T0054104.1 MGP_AJ_G0025579.1 mouse_genomes_project 2 29454760 29459837 - Dnm1 protein_coding processed_transcript MGP_AJ_T0054105.1 MGP_AJ_G0025579.1 mouse_genomes_project 2 29454775 29455611 - Dnm1 protein_coding retained_intron MGP_AJ_T0054106.1 MGP_AJ_G0025579.1 mouse_genomes_project 2 29484307 29497729 - MGP_AJ_P0054106 Dnm1 protein_coding nonsense_mediated_decay MGP_AJ_T0010369.1 MGP_AJ_G0008491.1 mouse_genomes_project 2 7539891 7540018 + Mir669i miRNA miRNA MGP_AJ_T0053540.1 MGP_AJ_G0025495.1 mouse_genomes_project 2 25124447 25132955 - MGP_AJ_P0053540 Fcnb protein_coding protein_coding MGP_AJ_T0053541.1 MGP_AJ_G0025495.1 mouse_genomes_project 2 25126168 25132955 - MGP_AJ_P0053541 Fcnb protein_coding protein_coding MGP_AJ_T0053542.1 MGP_AJ_G0025495.1 mouse_genomes_project 2 25127808 25132955 - MGP_AJ_P0053542 Fcnb protein_coding protein_coding MGP_AJ_T0007223.1 MGP_AJ_G0005920.1 mouse_genomes_project 2 64440712 64452547 + Gm1322 lincRNA lincRNA MGP_AJ_T0010383.1 MGP_AJ_G0008505.1 mouse_genomes_project 2 23610742 23610815 + Mir126a miRNA miRNA MGP_AJ_T0052937.1 MGP_AJ_G0025388.1 mouse_genomes_project 2 21552263 21715505 - MGP_AJ_P0052937 Cacna1b protein_coding protein_coding MGP_AJ_T0052938.1 MGP_AJ_G0025388.1 mouse_genomes_project 2 21552270 21715482 - MGP_AJ_P0052938 Cacna1b protein_coding protein_coding MGP_AJ_T0052939.1 MGP_AJ_G0025388.1 mouse_genomes_project 2 21554741 21715400 - MGP_AJ_P0052939 Cacna1b protein_coding protein_coding MGP_AJ_T0052940.1 MGP_AJ_G0025388.1 mouse_genomes_project 2 21554745 21555901 - MGP_AJ_P0052940 Cacna1b protein_coding protein_coding MGP_AJ_T0052941.1 MGP_AJ_G0025388.1 mouse_genomes_project 2 21554936 21715400 - MGP_AJ_P0052941 Cacna1b protein_coding protein_coding MGP_AJ_T0052942.1 MGP_AJ_G0025388.1 mouse_genomes_project 2 21554936 21715400 - MGP_AJ_P0052942 Cacna1b protein_coding protein_coding MGP_AJ_T0052943.1 MGP_AJ_G0025388.1 mouse_genomes_project 2 21556357 21566683 - MGP_AJ_P0052943 Cacna1b protein_coding protein_coding MGP_AJ_T0052944.1 MGP_AJ_G0025388.1 mouse_genomes_project 2 21558297 21585910 - MGP_AJ_P0052944 Cacna1b protein_coding nonsense_mediated_decay MGP_AJ_T0052945.1 MGP_AJ_G0025388.1 mouse_genomes_project 2 21571273 21580552 - MGP_AJ_P0052945 Cacna1b protein_coding protein_coding MGP_AJ_T0052946.1 MGP_AJ_G0025388.1 mouse_genomes_project 2 21630039 21636407 - MGP_AJ_P0052946 Cacna1b protein_coding protein_coding MGP_AJ_T0001021.1 MGP_AJ_G0000952.1 mouse_genomes_project 2 6631568 6632264 - TEC TEC MGP_AJ_T0055056.1 MGP_AJ_G0025755.1 mouse_genomes_project 2 62750779 62860290 - MGP_AJ_P0055056 Scn3a protein_coding protein_coding MGP_AJ_T0055057.1 MGP_AJ_G0025755.1 mouse_genomes_project 2 62751924 62860425 - MGP_AJ_P0055057 Scn3a protein_coding protein_coding MGP_AJ_T0055058.1 MGP_AJ_G0025755.1 mouse_genomes_project 2 62786794 62792259 - Scn3a protein_coding processed_transcript MGP_AJ_T0055059.1 MGP_AJ_G0025755.1 mouse_genomes_project 2 62818307 62823002 - MGP_AJ_P0055059 Scn3a protein_coding protein_coding MGP_AJ_T0057935.1 MGP_AJ_G0026519.1 mouse_genomes_project 2 133717241 133813861 + Plcb4 protein_coding processed_transcript MGP_AJ_T0057936.1 MGP_AJ_G0026519.1 mouse_genomes_project 2 133717784 133813948 + Plcb4 protein_coding processed_transcript MGP_AJ_T0057937.1 MGP_AJ_G0026519.1 mouse_genomes_project 2 133717845 133951979 + Plcb4 protein_coding retained_intron MGP_AJ_T0057938.1 MGP_AJ_G0026519.1 mouse_genomes_project 2 133717941 134058679 + MGP_AJ_P0057938 Plcb4 protein_coding protein_coding MGP_AJ_T0057939.1 MGP_AJ_G0026519.1 mouse_genomes_project 2 133812939 133985038 + Plcb4 protein_coding retained_intron MGP_AJ_T0057940.1 MGP_AJ_G0026519.1 mouse_genomes_project 2 133812939 134090839 + MGP_AJ_P0057940 Plcb4 protein_coding nonsense_mediated_decay MGP_AJ_T0057941.1 MGP_AJ_G0026519.1 mouse_genomes_project 2 133836751 133982965 + Plcb4 protein_coding processed_transcript MGP_AJ_T0057942.1 MGP_AJ_G0026519.1 mouse_genomes_project 2 133877727 134090638 + MGP_AJ_P0057942 Plcb4 protein_coding protein_coding MGP_AJ_T0057943.1 MGP_AJ_G0026519.1 mouse_genomes_project 2 133946035 134092279 + MGP_AJ_P0057943 Plcb4 protein_coding protein_coding MGP_AJ_T0057944.1 MGP_AJ_G0026519.1 mouse_genomes_project 2 133961850 134014970 + Plcb4 protein_coding processed_transcript MGP_AJ_T0057945.1 MGP_AJ_G0026519.1 mouse_genomes_project 2 134017736 134026017 + Plcb4 protein_coding processed_transcript MGP_AJ_T0057946.1 MGP_AJ_G0026519.1 mouse_genomes_project 2 134022134 134025970 + Plcb4 protein_coding processed_transcript MGP_AJ_T0057947.1 MGP_AJ_G0026519.1 mouse_genomes_project 2 134058694 134063929 + Plcb4 protein_coding processed_transcript MGP_AJ_T0057948.1 MGP_AJ_G0026519.1 mouse_genomes_project 2 134063608 134092270 + MGP_AJ_P0057948 Plcb4 protein_coding protein_coding MGP_AJ_T0057949.1 MGP_AJ_G0026519.1 mouse_genomes_project 2 134084799 134085613 + Plcb4 protein_coding processed_transcript MGP_AJ_T0004028.1 MGP_AJ_G0003579.1 mouse_genomes_project 2 74888195 74918224 + antisense antisense MGP_AJ_T0004029.1 MGP_AJ_G0003579.1 mouse_genomes_project 2 74888203 74918569 + antisense antisense MGP_AJ_T0058251.1 MGP_AJ_G0026604.1 mouse_genomes_project 2 149329124 149331757 + MGP_AJ_P0058251 protein_coding protein_coding MGP_AJ_T0058252.1 MGP_AJ_G0026604.1 mouse_genomes_project 2 149329145 149331663 + MGP_AJ_P0058252 protein_coding protein_coding MGP_AJ_T0101771.1 MGP_AJ_G0039693.1 mouse_genomes_project 2 109741431 109742556 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0011520.1 MGP_AJ_G0009642.1 mouse_genomes_project 2 155352675 155352921 + Gm27651 misc_RNA misc_RNA MGP_AJ_T0056909.1 MGP_AJ_G0026298.1 mouse_genomes_project 2 116994556 117006102 - MGP_AJ_P0056909 Ppp1r14d protein_coding protein_coding MGP_AJ_T0056910.1 MGP_AJ_G0026298.1 mouse_genomes_project 2 116994577 117006061 - MGP_AJ_P0056910 Ppp1r14d protein_coding protein_coding MGP_AJ_T0101050.1 MGP_AJ_G0039016.1 mouse_genomes_project 2 92447501 92447633 - Gm26396 snoRNA snoRNA MGP_AJ_T0059662.1 MGP_AJ_G0026939.1 mouse_genomes_project 2 173504506 173527870 + MGP_AJ_P0059662 Edn3 protein_coding protein_coding MGP_AJ_T0059663.1 MGP_AJ_G0026939.1 mouse_genomes_project 2 173504686 173525808 + MGP_AJ_P0059663 Edn3 protein_coding protein_coding MGP_AJ_T0059664.1 MGP_AJ_G0026939.1 mouse_genomes_project 2 173504939 173526413 + Edn3 protein_coding retained_intron MGP_AJ_T0059665.1 MGP_AJ_G0026939.1 mouse_genomes_project 2 173513809 173526368 + Edn3 protein_coding processed_transcript MGP_AJ_T0053245.1 MGP_AJ_G0025438.1 mouse_genomes_project 2 22617139 22620503 - MGP_AJ_P0053245 Fcna protein_coding protein_coding MGP_AJ_T0053246.1 MGP_AJ_G0025438.1 mouse_genomes_project 2 22617438 22619758 - Fcna protein_coding processed_transcript MGP_AJ_T0013598.1 MGP_AJ_G0011693.1 mouse_genomes_project 2 70484616 70485124 + processed_pseudogene processed_pseudogene MGP_AJ_T0053136.1 MGP_AJ_G0025420.1 mouse_genomes_project 2 22379375 22384831 + MGP_AJ_P0053136 Entpd2 protein_coding protein_coding MGP_AJ_T0053137.1 MGP_AJ_G0025420.1 mouse_genomes_project 2 22379417 22384802 + Entpd2 protein_coding processed_transcript MGP_AJ_T0053138.1 MGP_AJ_G0025420.1 mouse_genomes_project 2 22382254 22383353 + Entpd2 protein_coding processed_transcript MGP_AJ_T0007434.1 MGP_AJ_G0006093.1 mouse_genomes_project 2 172113608 172114763 + Gm14642 lincRNA lincRNA MGP_AJ_T0007143.1 MGP_AJ_G0005856.1 mouse_genomes_project 2 6591198 6598722 - Gm13218 lincRNA lincRNA MGP_AJ_T0013581.1 MGP_AJ_G0011676.1 mouse_genomes_project 2 64208465 64208958 + processed_pseudogene processed_pseudogene MGP_AJ_T0055211.1 MGP_AJ_G0025788.1 mouse_genomes_project 2 67780274 67783042 + MGP_AJ_P0055211 Sp5 protein_coding protein_coding MGP_AJ_T0017794.1 MGP_AJ_G0015415.1 mouse_genomes_project 2 86411441 86415077 - Gm13760 processed_transcript processed_transcript MGP_AJ_T0017795.1 MGP_AJ_G0015415.1 mouse_genomes_project 2 86411751 86415549 - Gm13760 processed_transcript processed_transcript MGP_AJ_T0058639.1 MGP_AJ_G0026710.1 mouse_genomes_project 2 154282148 154283845 - MGP_AJ_P0058639 BC029722 protein_coding protein_coding MGP_AJ_T0055289.1 MGP_AJ_G0025802.1 mouse_genomes_project 2 68841311 68847181 + MGP_AJ_P0055289 Dlx1 protein_coding protein_coding MGP_AJ_T0055290.1 MGP_AJ_G0025802.1 mouse_genomes_project 2 68841881 68843264 + MGP_AJ_P0055290 Dlx1 protein_coding protein_coding MGP_AJ_T0055291.1 MGP_AJ_G0025802.1 mouse_genomes_project 2 68842299 68843430 + MGP_AJ_P0055291 Dlx1 protein_coding protein_coding MGP_AJ_T0055292.1 MGP_AJ_G0025802.1 mouse_genomes_project 2 68843051 68845726 + MGP_AJ_P0055292 Dlx1 protein_coding nonsense_mediated_decay MGP_AJ_T0055293.1 MGP_AJ_G0025802.1 mouse_genomes_project 2 68843145 68847182 + Dlx1 protein_coding retained_intron MGP_AJ_T0055294.1 MGP_AJ_G0025802.1 mouse_genomes_project 2 68843978 68845895 + Dlx1 protein_coding retained_intron MGP_AJ_T0055887.1 MGP_AJ_G0026022.1 mouse_genomes_project 2 86171297 86171684 - MGP_AJ_P0055887 Olfr1187-ps1 protein_coding protein_coding MGP_AJ_T0055888.1 MGP_AJ_G0026022.1 mouse_genomes_project 2 86171300 86171603 - MGP_AJ_P0055888 Olfr1187-ps1 protein_coding protein_coding MGP_AJ_T0058197.1 MGP_AJ_G0026589.1 mouse_genomes_project 2 147989203 147989893 - MGP_AJ_P0058197 C530025M09Rik protein_coding protein_coding MGP_AJ_T0007144.1 MGP_AJ_G0005857.1 mouse_genomes_project 2 8067952 8091221 + Gm13264 lincRNA lincRNA MGP_AJ_T0058633.1 MGP_AJ_G0026708.1 mouse_genomes_project 2 154211861 154216260 + MGP_AJ_P0058633 Procr protein_coding protein_coding MGP_AJ_T0058634.1 MGP_AJ_G0026708.1 mouse_genomes_project 2 154211867 154215117 + MGP_AJ_P0058634 Procr protein_coding protein_coding MGP_AJ_T0058635.1 MGP_AJ_G0026708.1 mouse_genomes_project 2 154211894 154214584 + Procr protein_coding retained_intron MGP_AJ_T0058636.1 MGP_AJ_G0026708.1 mouse_genomes_project 2 154212088 154216257 + Procr protein_coding processed_transcript MGP_AJ_T0055750.1 MGP_AJ_G0025900.1 mouse_genomes_project 2 82802262 82803207 - MGP_AJ_P0055750 Olfr994 protein_coding protein_coding MGP_AJ_T0058249.1 MGP_AJ_G0026603.1 mouse_genomes_project 2 149244803 149254808 - MGP_AJ_P0058249 protein_coding protein_coding MGP_AJ_T0004149.1 MGP_AJ_G0003668.1 mouse_genomes_project 2 161968316 161968883 + 2900093K20Rik antisense antisense MGP_AJ_T0013624.1 MGP_AJ_G0011719.1 mouse_genomes_project 2 78368711 78369326 - processed_pseudogene processed_pseudogene MGP_AJ_T0013484.1 MGP_AJ_G0011579.1 mouse_genomes_project 2 30484116 30484383 + processed_pseudogene processed_pseudogene MGP_AJ_T0052530.1 MGP_AJ_G0025319.1 mouse_genomes_project 2 8195231 8292594 + Prkcq protein_coding retained_intron MGP_AJ_T0052531.1 MGP_AJ_G0025319.1 mouse_genomes_project 2 8195429 8314822 + Prkcq protein_coding retained_intron MGP_AJ_T0052532.1 MGP_AJ_G0025319.1 mouse_genomes_project 2 8245957 8332390 + MGP_AJ_P0052532 Prkcq protein_coding protein_coding MGP_AJ_T0052533.1 MGP_AJ_G0025319.1 mouse_genomes_project 2 8249857 8331280 + MGP_AJ_P0052533 Prkcq protein_coding protein_coding MGP_AJ_T0052534.1 MGP_AJ_G0025319.1 mouse_genomes_project 2 8275794 8281084 + Prkcq protein_coding retained_intron MGP_AJ_T0052535.1 MGP_AJ_G0025319.1 mouse_genomes_project 2 8278193 8331859 + Prkcq protein_coding processed_transcript MGP_AJ_T0013859.1 MGP_AJ_G0011954.1 mouse_genomes_project 2 161327961 161328294 + processed_pseudogene processed_pseudogene MGP_AJ_T0059602.1 MGP_AJ_G0026923.1 mouse_genomes_project 2 171937206 171990298 - MGP_AJ_P0059602 Pmepa1 protein_coding protein_coding MGP_AJ_T0059603.1 MGP_AJ_G0026923.1 mouse_genomes_project 2 171940800 171989954 - MGP_AJ_P0059603 Pmepa1 protein_coding protein_coding MGP_AJ_T0059604.1 MGP_AJ_G0026923.1 mouse_genomes_project 2 171940965 171947473 - Pmepa1 protein_coding retained_intron MGP_AJ_T0053870.1 MGP_AJ_G0025547.1 mouse_genomes_project 2 27502874 27534331 + MGP_AJ_P0053870 Ptpa protein_coding protein_coding MGP_AJ_T0053871.1 MGP_AJ_G0025547.1 mouse_genomes_project 2 27502966 27534332 + MGP_AJ_P0053871 Ptpa protein_coding protein_coding MGP_AJ_T0053872.1 MGP_AJ_G0025547.1 mouse_genomes_project 2 27502972 27518702 + MGP_AJ_P0053872 Ptpa protein_coding nonsense_mediated_decay MGP_AJ_T0053873.1 MGP_AJ_G0025547.1 mouse_genomes_project 2 27502977 27534143 + MGP_AJ_P0053873 Ptpa protein_coding protein_coding MGP_AJ_T0053874.1 MGP_AJ_G0025547.1 mouse_genomes_project 2 27503031 27534330 + Ptpa protein_coding retained_intron MGP_AJ_T0053875.1 MGP_AJ_G0025547.1 mouse_genomes_project 2 27503137 27515082 + Ptpa protein_coding processed_transcript MGP_AJ_T0053876.1 MGP_AJ_G0025547.1 mouse_genomes_project 2 27515033 27524726 + Ptpa protein_coding retained_intron MGP_AJ_T0053877.1 MGP_AJ_G0025547.1 mouse_genomes_project 2 27524853 27533476 + MGP_AJ_P0053877 Ptpa protein_coding nonsense_mediated_decay MGP_AJ_T0053878.1 MGP_AJ_G0025547.1 mouse_genomes_project 2 27528375 27533657 + MGP_AJ_P0053878 Ptpa protein_coding protein_coding MGP_AJ_T0053879.1 MGP_AJ_G0025547.1 mouse_genomes_project 2 27529257 27533331 + MGP_AJ_P0053879 Ptpa protein_coding protein_coding MGP_AJ_T0053880.1 MGP_AJ_G0025547.1 mouse_genomes_project 2 27529741 27533425 + Ptpa protein_coding processed_transcript MGP_AJ_T0053881.1 MGP_AJ_G0025547.1 mouse_genomes_project 2 27532180 27533600 + Ptpa protein_coding processed_transcript MGP_AJ_T0053882.1 MGP_AJ_G0025547.1 mouse_genomes_project 2 27532240 27533301 + Ptpa protein_coding processed_transcript MGP_AJ_T0004107.1 MGP_AJ_G0003632.1 mouse_genomes_project 2 139295586 139352166 - Macrod2os1 antisense antisense MGP_AJ_T0054069.1 MGP_AJ_G0025577.1 mouse_genomes_project 2 29396075 29401137 - MGP_AJ_P0054069 Uck1 protein_coding unknown_likely_coding MGP_AJ_T0054070.1 MGP_AJ_G0025577.1 mouse_genomes_project 2 29397389 29400765 - MGP_AJ_P0054070 Uck1 protein_coding protein_coding MGP_AJ_T0054071.1 MGP_AJ_G0025577.1 mouse_genomes_project 2 29398967 29400754 - Uck1 protein_coding retained_intron MGP_AJ_T0054072.1 MGP_AJ_G0025577.1 mouse_genomes_project 2 29399216 29401182 - Uck1 protein_coding retained_intron MGP_AJ_T0004031.1 MGP_AJ_G0003581.1 mouse_genomes_project 2 81121293 81121753 - Gm13686 antisense antisense MGP_AJ_T0056987.1 MGP_AJ_G0026316.1 mouse_genomes_project 2 117791054 117846003 + MGP_AJ_P0056987 Mapkbp1 protein_coding protein_coding MGP_AJ_T0056988.1 MGP_AJ_G0026316.1 mouse_genomes_project 2 117791409 117845997 + MGP_AJ_P0056988 Mapkbp1 protein_coding unknown_likely_coding MGP_AJ_T0056989.1 MGP_AJ_G0026316.1 mouse_genomes_project 2 117829983 117831392 + Mapkbp1 protein_coding retained_intron MGP_AJ_T0056990.1 MGP_AJ_G0026316.1 mouse_genomes_project 2 117831340 117833939 + Mapkbp1 protein_coding retained_intron MGP_AJ_T0056991.1 MGP_AJ_G0026316.1 mouse_genomes_project 2 117840691 117841665 + Mapkbp1 protein_coding retained_intron MGP_AJ_T0007359.1 MGP_AJ_G0006029.1 mouse_genomes_project 2 146593577 146603915 + Gm14120 lincRNA lincRNA MGP_AJ_T0057313.1 MGP_AJ_G0026373.1 mouse_genomes_project 2 120174980 120179015 + MGP_AJ_P0057313 Duoxa2 protein_coding protein_coding MGP_AJ_T0004015.1 MGP_AJ_G0003571.1 mouse_genomes_project 2 70969785 70974157 + Chrna1os antisense antisense MGP_AJ_T0004016.1 MGP_AJ_G0003571.1 mouse_genomes_project 2 70969795 70974178 + Chrna1os antisense antisense MGP_AJ_T0003967.1 MGP_AJ_G0003537.1 mouse_genomes_project 2 35941412 35949336 + Nr5a1os antisense antisense MGP_AJ_T0007330.1 MGP_AJ_G0006006.1 mouse_genomes_project 2 126237592 126239543 - Gm14012 lincRNA lincRNA MGP_AJ_T0013423.1 MGP_AJ_G0011518.1 mouse_genomes_project 2 7990829 7991667 - processed_pseudogene processed_pseudogene MGP_AJ_T0017910.1 MGP_AJ_G0015467.1 mouse_genomes_project 2 165797291 165801925 + 1110018N20Rik processed_transcript processed_transcript MGP_AJ_T0017911.1 MGP_AJ_G0015467.1 mouse_genomes_project 2 165797696 165802191 + 1110018N20Rik processed_transcript processed_transcript MGP_AJ_T0017912.1 MGP_AJ_G0015467.1 mouse_genomes_project 2 165798250 165802474 + 1110018N20Rik processed_transcript processed_transcript MGP_AJ_T0004040.1 MGP_AJ_G0003588.1 mouse_genomes_project 2 99665562 99669301 + Gm13920 antisense antisense MGP_AJ_T0013705.1 MGP_AJ_G0011800.1 mouse_genomes_project 2 104602194 104602799 - processed_pseudogene processed_pseudogene MGP_AJ_T0059693.1 MGP_AJ_G0026948.1 mouse_genomes_project 2 178861567 178872030 + MGP_AJ_P0059693 Lsm14b protein_coding protein_coding MGP_AJ_T0059694.1 MGP_AJ_G0026948.1 mouse_genomes_project 2 178861766 178872028 + MGP_AJ_P0059694 Lsm14b protein_coding protein_coding MGP_AJ_T0059695.1 MGP_AJ_G0026948.1 mouse_genomes_project 2 178864486 178870374 + Lsm14b protein_coding processed_transcript MGP_AJ_T0007152.1 MGP_AJ_G0005865.1 mouse_genomes_project 2 16367347 16372297 + 4930447M23Rik lincRNA lincRNA MGP_AJ_T0007153.1 MGP_AJ_G0005865.1 mouse_genomes_project 2 16367868 16374157 + 4930447M23Rik lincRNA lincRNA MGP_AJ_T0007154.1 MGP_AJ_G0005865.1 mouse_genomes_project 2 16367967 16372031 + 4930447M23Rik lincRNA lincRNA MGP_AJ_T0101057.1 MGP_AJ_G0039023.1 mouse_genomes_project 2 105725480 105725611 - Gm23749 snoRNA snoRNA MGP_AJ_T0055442.1 MGP_AJ_G0025835.1 mouse_genomes_project 2 73062432 73092815 - MGP_AJ_P0055442 Nfe2l2 protein_coding protein_coding MGP_AJ_T0055443.1 MGP_AJ_G0025835.1 mouse_genomes_project 2 73078649 73092663 - Nfe2l2 protein_coding processed_transcript MGP_AJ_T0055846.1 MGP_AJ_G0025985.1 mouse_genomes_project 2 85182814 85184393 + MGP_AJ_P0055846 Olfr1131 protein_coding protein_coding MGP_AJ_T0054651.1 MGP_AJ_G0025691.1 mouse_genomes_project 2 40828952 40837119 + Kynu protein_coding processed_transcript MGP_AJ_T0054652.1 MGP_AJ_G0025691.1 mouse_genomes_project 2 40828952 40957341 + MGP_AJ_P0054652 Kynu protein_coding protein_coding MGP_AJ_T0054653.1 MGP_AJ_G0025691.1 mouse_genomes_project 2 40828965 40954854 + MGP_AJ_P0054653 Kynu protein_coding protein_coding MGP_AJ_T0054654.1 MGP_AJ_G0025691.1 mouse_genomes_project 2 40828977 40911094 + MGP_AJ_P0054654 Kynu protein_coding protein_coding MGP_AJ_T0054655.1 MGP_AJ_G0025691.1 mouse_genomes_project 2 40873869 40880462 + Kynu protein_coding processed_transcript MGP_AJ_T0054656.1 MGP_AJ_G0025691.1 mouse_genomes_project 2 40945603 40956062 + Kynu protein_coding processed_transcript MGP_AJ_T0098947.1 MGP_AJ_G0036925.1 mouse_genomes_project 2 17963597 17972505 - Gm13380 sense_intronic sense_intronic MGP_AJ_T0057300.1 MGP_AJ_G0026366.1 mouse_genomes_project 2 119920357 119990635 - MGP_AJ_P0057300 Spg11 protein_coding protein_coding MGP_AJ_T0057301.1 MGP_AJ_G0026366.1 mouse_genomes_project 2 119924406 119990617 - MGP_AJ_P0057301 Spg11 protein_coding unknown_likely_coding MGP_AJ_T0057302.1 MGP_AJ_G0026366.1 mouse_genomes_project 2 119965160 119990545 - Spg11 protein_coding processed_transcript MGP_AJ_T0057303.1 MGP_AJ_G0026366.1 mouse_genomes_project 2 119979426 119990624 - Spg11 protein_coding processed_transcript MGP_AJ_T0017770.1 MGP_AJ_G0015394.1 mouse_genomes_project 2 54465043 54513049 - BB557941 processed_transcript processed_transcript MGP_AJ_T0053678.1 MGP_AJ_G0025522.1 mouse_genomes_project 2 26873891 26888580 + MGP_AJ_P0053678 Slc27a4 protein_coding protein_coding MGP_AJ_T0053679.1 MGP_AJ_G0025522.1 mouse_genomes_project 2 26878255 26881961 + Slc27a4 protein_coding processed_transcript MGP_AJ_T0052836.1 MGP_AJ_G0025366.1 mouse_genomes_project 2 18247814 18257107 + MGP_AJ_P0052836 Thnsl1 protein_coding protein_coding MGP_AJ_T0052837.1 MGP_AJ_G0025366.1 mouse_genomes_project 2 18247829 18256466 + MGP_AJ_P0052837 Thnsl1 protein_coding protein_coding MGP_AJ_T0052838.1 MGP_AJ_G0025366.1 mouse_genomes_project 2 18247849 18255369 + MGP_AJ_P0052838 Thnsl1 protein_coding protein_coding MGP_AJ_T0052839.1 MGP_AJ_G0025366.1 mouse_genomes_project 2 18247863 18253632 + MGP_AJ_P0052839 Thnsl1 protein_coding protein_coding MGP_AJ_T0052840.1 MGP_AJ_G0025366.1 mouse_genomes_project 2 18247877 18256398 + MGP_AJ_P0052840 Thnsl1 protein_coding protein_coding MGP_AJ_T0101772.1 MGP_AJ_G0039694.1 mouse_genomes_project 2 128848684 128849166 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0058340.1 MGP_AJ_G0026631.1 mouse_genomes_project 2 150806050 150809237 + MGP_AJ_P0058340 Defb28 protein_coding protein_coding MGP_AJ_T0056610.1 MGP_AJ_G0026197.1 mouse_genomes_project 2 104733447 104736964 - MGP_AJ_P0056610 Fshb protein_coding protein_coding MGP_AJ_T0004164.1 MGP_AJ_G0003676.1 mouse_genomes_project 2 163449883 163459083 + Zfp335os antisense antisense MGP_AJ_T0004165.1 MGP_AJ_G0003676.1 mouse_genomes_project 2 163452578 163458693 + Zfp335os antisense antisense MGP_AJ_T0007197.1 MGP_AJ_G0005897.1 mouse_genomes_project 2 42993824 42995630 + 1700019E08Rik lincRNA lincRNA MGP_AJ_T0007198.1 MGP_AJ_G0005897.1 mouse_genomes_project 2 42994019 42995249 + 1700019E08Rik lincRNA lincRNA MGP_AJ_T0055967.1 MGP_AJ_G0026079.1 mouse_genomes_project 2 87603729 87607104 + MGP_AJ_P0055967 Olfr1263 protein_coding protein_coding MGP_AJ_T0058133.1 MGP_AJ_G0026563.1 mouse_genomes_project 2 144319267 144593637 - MGP_AJ_P0058133 Ralgapa2 protein_coding protein_coding MGP_AJ_T0058134.1 MGP_AJ_G0026563.1 mouse_genomes_project 2 144323470 144527993 - MGP_AJ_P0058134 Ralgapa2 protein_coding protein_coding MGP_AJ_T0058135.1 MGP_AJ_G0026563.1 mouse_genomes_project 2 144324286 144340771 - Ralgapa2 protein_coding processed_transcript MGP_AJ_T0058136.1 MGP_AJ_G0026563.1 mouse_genomes_project 2 144327700 144593532 - MGP_AJ_P0058136 Ralgapa2 protein_coding protein_coding MGP_AJ_T0058137.1 MGP_AJ_G0026563.1 mouse_genomes_project 2 144337967 144469936 - MGP_AJ_P0058137 Ralgapa2 protein_coding nonsense_mediated_decay MGP_AJ_T0058138.1 MGP_AJ_G0026563.1 mouse_genomes_project 2 144393582 144593532 - MGP_AJ_P0058138 Ralgapa2 protein_coding unknown_likely_coding MGP_AJ_T0058139.1 MGP_AJ_G0026563.1 mouse_genomes_project 2 144442039 144488341 - Ralgapa2 protein_coding retained_intron MGP_AJ_T0058140.1 MGP_AJ_G0026563.1 mouse_genomes_project 2 144486894 144494962 - Ralgapa2 protein_coding retained_intron MGP_AJ_T0058141.1 MGP_AJ_G0026563.1 mouse_genomes_project 2 144502150 144593544 - Ralgapa2 protein_coding retained_intron MGP_AJ_T0058142.1 MGP_AJ_G0026563.1 mouse_genomes_project 2 144511507 144593637 - Ralgapa2 protein_coding retained_intron MGP_AJ_T0058143.1 MGP_AJ_G0026563.1 mouse_genomes_project 2 144566095 144593659 - Ralgapa2 protein_coding retained_intron MGP_AJ_T0017728.1 MGP_AJ_G0015370.1 mouse_genomes_project 2 11596261 11619394 + Gm13266 processed_transcript retained_intron MGP_AJ_T0017729.1 MGP_AJ_G0015370.1 mouse_genomes_project 2 11596261 11626418 + Gm13266 processed_transcript lincRNA MGP_AJ_T0017730.1 MGP_AJ_G0015370.1 mouse_genomes_project 2 11596269 11619214 + Gm13266 processed_transcript lincRNA MGP_AJ_T0011522.1 MGP_AJ_G0009644.1 mouse_genomes_project 2 163298587 163298903 + Gm22596 misc_RNA misc_RNA MGP_AJ_T0059606.1 MGP_AJ_G0026925.1 mouse_genomes_project 2 172292245 172301949 - MGP_AJ_P0059606 Ankrd60 protein_coding protein_coding MGP_AJ_T0059607.1 MGP_AJ_G0026925.1 mouse_genomes_project 2 172292283 172301782 - MGP_AJ_P0059607 Ankrd60 protein_coding protein_coding MGP_AJ_T0059608.1 MGP_AJ_G0026925.1 mouse_genomes_project 2 172295975 172301857 - Ankrd60 protein_coding processed_transcript MGP_AJ_T0055800.1 MGP_AJ_G0025948.1 mouse_genomes_project 2 84076624 84077720 - MGP_AJ_P0055800 Olfr1085 protein_coding protein_coding MGP_AJ_T0058088.1 MGP_AJ_G0026554.1 mouse_genomes_project 2 142682556 142683869 + MGP_AJ_P0058088 Gm561 protein_coding protein_coding MGP_AJ_T0055701.1 MGP_AJ_G0025886.1 mouse_genomes_project 2 82204917 82216578 - MGP_AJ_P0055701 Smtnl1 protein_coding protein_coding MGP_AJ_T0001069.1 MGP_AJ_G0001000.1 mouse_genomes_project 2 35252636 35263509 + TEC TEC MGP_AJ_T0013446.1 MGP_AJ_G0011541.1 mouse_genomes_project 2 15691714 15692030 - processed_pseudogene processed_pseudogene MGP_AJ_T0057287.1 MGP_AJ_G0026362.1 mouse_genomes_project 2 119806949 119808289 - MGP_AJ_P0057287 protein_coding protein_coding MGP_AJ_T0055919.1 MGP_AJ_G0026050.1 mouse_genomes_project 2 86873025 86873997 - MGP_AJ_P0055919 Olfr1228 protein_coding protein_coding MGP_AJ_T0013764.1 MGP_AJ_G0011859.1 mouse_genomes_project 2 129897691 129898985 + processed_pseudogene processed_pseudogene MGP_AJ_T0057113.1 MGP_AJ_G0026335.1 mouse_genomes_project 2 118551209 118655861 - MGP_AJ_P0057113 Ttbk2 protein_coding protein_coding MGP_AJ_T0057114.1 MGP_AJ_G0026335.1 mouse_genomes_project 2 118551209 118655675 - MGP_AJ_P0057114 Ttbk2 protein_coding protein_coding MGP_AJ_T0057115.1 MGP_AJ_G0026335.1 mouse_genomes_project 2 118551209 118655663 - MGP_AJ_P0057115 Ttbk2 protein_coding protein_coding MGP_AJ_T0057116.1 MGP_AJ_G0026335.1 mouse_genomes_project 2 118564054 118655647 - MGP_AJ_P0057116 Ttbk2 protein_coding protein_coding MGP_AJ_T0057117.1 MGP_AJ_G0026335.1 mouse_genomes_project 2 118569267 118655621 - MGP_AJ_P0057117 Ttbk2 protein_coding protein_coding MGP_AJ_T0057118.1 MGP_AJ_G0026335.1 mouse_genomes_project 2 118608318 118655692 - Ttbk2 protein_coding processed_transcript MGP_AJ_T0017744.1 MGP_AJ_G0015378.1 mouse_genomes_project 2 23475318 23476514 + Gm13568 processed_transcript processed_transcript MGP_AJ_T0013425.1 MGP_AJ_G0011520.1 mouse_genomes_project 2 8451131 8452128 + processed_pseudogene processed_pseudogene MGP_AJ_T0058750.1 MGP_AJ_G0026726.1 mouse_genomes_project 2 154622523 154657110 - MGP_AJ_P0058750 Rbm39 protein_coding protein_coding MGP_AJ_T0058751.1 MGP_AJ_G0026726.1 mouse_genomes_project 2 154622530 154656452 - MGP_AJ_P0058751 Rbm39 protein_coding protein_coding MGP_AJ_T0058752.1 MGP_AJ_G0026726.1 mouse_genomes_project 2 154622533 154657039 - MGP_AJ_P0058752 Rbm39 protein_coding protein_coding MGP_AJ_T0058753.1 MGP_AJ_G0026726.1 mouse_genomes_project 2 154622533 154657021 - MGP_AJ_P0058753 Rbm39 protein_coding nonsense_mediated_decay MGP_AJ_T0058754.1 MGP_AJ_G0026726.1 mouse_genomes_project 2 154623224 154657048 - MGP_AJ_P0058754 Rbm39 protein_coding nonsense_mediated_decay MGP_AJ_T0058755.1 MGP_AJ_G0026726.1 mouse_genomes_project 2 154623224 154657056 - MGP_AJ_P0058755 Rbm39 protein_coding nonsense_mediated_decay MGP_AJ_T0058756.1 MGP_AJ_G0026726.1 mouse_genomes_project 2 154624520 154640329 - MGP_AJ_P0058756 Rbm39 protein_coding protein_coding MGP_AJ_T0058757.1 MGP_AJ_G0026726.1 mouse_genomes_project 2 154637237 154657014 - MGP_AJ_P0058757 Rbm39 protein_coding protein_coding MGP_AJ_T0058758.1 MGP_AJ_G0026726.1 mouse_genomes_project 2 154637239 154640618 - Rbm39 protein_coding retained_intron MGP_AJ_T0058759.1 MGP_AJ_G0026726.1 mouse_genomes_project 2 154638221 154644638 - Rbm39 protein_coding processed_transcript MGP_AJ_T0058760.1 MGP_AJ_G0026726.1 mouse_genomes_project 2 154639391 154643555 - Rbm39 protein_coding retained_intron MGP_AJ_T0058761.1 MGP_AJ_G0026726.1 mouse_genomes_project 2 154640211 154657031 - MGP_AJ_P0058761 Rbm39 protein_coding protein_coding MGP_AJ_T0058762.1 MGP_AJ_G0026726.1 mouse_genomes_project 2 154640325 154649834 - Rbm39 protein_coding processed_transcript MGP_AJ_T0058763.1 MGP_AJ_G0026726.1 mouse_genomes_project 2 154642944 154654603 - Rbm39 protein_coding retained_intron MGP_AJ_T0058764.1 MGP_AJ_G0026726.1 mouse_genomes_project 2 154645452 154654255 - Rbm39 protein_coding processed_transcript MGP_AJ_T0058765.1 MGP_AJ_G0026726.1 mouse_genomes_project 2 154649705 154657033 - MGP_AJ_P0058765 Rbm39 protein_coding nonsense_mediated_decay MGP_AJ_T0058766.1 MGP_AJ_G0026726.1 mouse_genomes_project 2 154649804 154657019 - MGP_AJ_P0058766 Rbm39 protein_coding nonsense_mediated_decay MGP_AJ_T0058767.1 MGP_AJ_G0026726.1 mouse_genomes_project 2 154649826 154654773 - Rbm39 protein_coding retained_intron MGP_AJ_T0058768.1 MGP_AJ_G0026726.1 mouse_genomes_project 2 154651557 154656784 - MGP_AJ_P0058768 Rbm39 protein_coding nonsense_mediated_decay MGP_AJ_T0058769.1 MGP_AJ_G0026726.1 mouse_genomes_project 2 154651561 154657028 - MGP_AJ_P0058769 Rbm39 protein_coding nonsense_mediated_decay MGP_AJ_T0058770.1 MGP_AJ_G0026726.1 mouse_genomes_project 2 154651646 154657110 - MGP_AJ_P0058770 Rbm39 protein_coding protein_coding MGP_AJ_T0058771.1 MGP_AJ_G0026726.1 mouse_genomes_project 2 154654032 154657068 - Rbm39 protein_coding retained_intron MGP_AJ_T0058772.1 MGP_AJ_G0026726.1 mouse_genomes_project 2 154654232 154657021 - MGP_AJ_P0058772 Rbm39 protein_coding nonsense_mediated_decay MGP_AJ_T0058773.1 MGP_AJ_G0026726.1 mouse_genomes_project 2 154655430 154657084 - Rbm39 protein_coding retained_intron MGP_AJ_T0058774.1 MGP_AJ_G0026726.1 mouse_genomes_project 2 154655432 154657017 - Rbm39 protein_coding retained_intron MGP_AJ_T0010370.1 MGP_AJ_G0008492.1 mouse_genomes_project 2 7540442 7540567 + Mir669h miRNA miRNA MGP_AJ_T0058152.1 MGP_AJ_G0026567.1 mouse_genomes_project 2 145284804 145293235 - MGP_AJ_P0058152 Nkx2-2 protein_coding protein_coding MGP_AJ_T0058153.1 MGP_AJ_G0026567.1 mouse_genomes_project 2 145290377 145293540 - MGP_AJ_P0058153 Nkx2-2 protein_coding protein_coding MGP_AJ_T0058154.1 MGP_AJ_G0026567.1 mouse_genomes_project 2 145293440 145301951 - Nkx2-2 protein_coding processed_transcript MGP_AJ_T0058155.1 MGP_AJ_G0026567.1 mouse_genomes_project 2 145293517 145301950 - Nkx2-2 protein_coding processed_transcript MGP_AJ_T0059657.1 MGP_AJ_G0026937.1 mouse_genomes_project 2 173204195 173211961 - MGP_AJ_P0059657 Slmo2 protein_coding protein_coding MGP_AJ_T0059658.1 MGP_AJ_G0026937.1 mouse_genomes_project 2 173204803 173212032 - MGP_AJ_P0059658 Slmo2 protein_coding protein_coding MGP_AJ_T0059659.1 MGP_AJ_G0026937.1 mouse_genomes_project 2 173208270 173211989 - Slmo2 protein_coding retained_intron MGP_AJ_T0059660.1 MGP_AJ_G0026937.1 mouse_genomes_project 2 173208479 173212029 - MGP_AJ_P0059660 Slmo2 protein_coding protein_coding MGP_AJ_T0053001.1 MGP_AJ_G0025395.1 mouse_genomes_project 2 22017501 22026028 + MGP_AJ_P0053001 Nsmf protein_coding protein_coding MGP_AJ_T0053002.1 MGP_AJ_G0025395.1 mouse_genomes_project 2 22017519 22023709 + MGP_AJ_P0053002 Nsmf protein_coding protein_coding MGP_AJ_T0053003.1 MGP_AJ_G0025395.1 mouse_genomes_project 2 22017525 22026027 + MGP_AJ_P0053003 Nsmf protein_coding protein_coding MGP_AJ_T0053004.1 MGP_AJ_G0025395.1 mouse_genomes_project 2 22017530 22026028 + MGP_AJ_P0053004 Nsmf protein_coding protein_coding MGP_AJ_T0053005.1 MGP_AJ_G0025395.1 mouse_genomes_project 2 22017549 22020022 + Nsmf protein_coding retained_intron MGP_AJ_T0053006.1 MGP_AJ_G0025395.1 mouse_genomes_project 2 22017553 22018243 + Nsmf protein_coding retained_intron MGP_AJ_T0053007.1 MGP_AJ_G0025395.1 mouse_genomes_project 2 22017559 22026028 + MGP_AJ_P0053007 Nsmf protein_coding protein_coding MGP_AJ_T0053008.1 MGP_AJ_G0025395.1 mouse_genomes_project 2 22017559 22026028 + MGP_AJ_P0053008 Nsmf protein_coding protein_coding MGP_AJ_T0053009.1 MGP_AJ_G0025395.1 mouse_genomes_project 2 22017571 22022203 + MGP_AJ_P0053009 Nsmf protein_coding protein_coding MGP_AJ_T0053010.1 MGP_AJ_G0025395.1 mouse_genomes_project 2 22017581 22026028 + MGP_AJ_P0053010 Nsmf protein_coding protein_coding MGP_AJ_T0053011.1 MGP_AJ_G0025395.1 mouse_genomes_project 2 22017602 22026028 + MGP_AJ_P0053011 Nsmf protein_coding protein_coding MGP_AJ_T0053012.1 MGP_AJ_G0025395.1 mouse_genomes_project 2 22017614 22025775 + MGP_AJ_P0053012 Nsmf protein_coding nonsense_mediated_decay MGP_AJ_T0053013.1 MGP_AJ_G0025395.1 mouse_genomes_project 2 22017614 22026028 + MGP_AJ_P0053013 Nsmf protein_coding protein_coding MGP_AJ_T0053014.1 MGP_AJ_G0025395.1 mouse_genomes_project 2 22019026 22020494 + Nsmf protein_coding retained_intron MGP_AJ_T0053015.1 MGP_AJ_G0025395.1 mouse_genomes_project 2 22020293 22026028 + MGP_AJ_P0053015 Nsmf protein_coding protein_coding MGP_AJ_T0053016.1 MGP_AJ_G0025395.1 mouse_genomes_project 2 22020722 22022806 + Nsmf protein_coding retained_intron MGP_AJ_T0053017.1 MGP_AJ_G0025395.1 mouse_genomes_project 2 22023282 22024254 + Nsmf protein_coding retained_intron MGP_AJ_T0053018.1 MGP_AJ_G0025395.1 mouse_genomes_project 2 22023975 22024856 + Nsmf protein_coding retained_intron MGP_AJ_T0013545.1 MGP_AJ_G0011640.1 mouse_genomes_project 2 51579488 51580305 + processed_pseudogene processed_pseudogene MGP_AJ_T0058385.1 MGP_AJ_G0026649.1 mouse_genomes_project 2 151261827 151309135 + MGP_AJ_P0058385 Ttll9 protein_coding protein_coding MGP_AJ_T0058386.1 MGP_AJ_G0026649.1 mouse_genomes_project 2 151261848 151305029 + MGP_AJ_P0058386 Ttll9 protein_coding nonsense_mediated_decay MGP_AJ_T0058387.1 MGP_AJ_G0026649.1 mouse_genomes_project 2 151261848 151305036 + MGP_AJ_P0058387 Ttll9 protein_coding nonsense_mediated_decay MGP_AJ_T0058388.1 MGP_AJ_G0026649.1 mouse_genomes_project 2 151261848 151305080 + MGP_AJ_P0058388 Ttll9 protein_coding protein_coding MGP_AJ_T0058389.1 MGP_AJ_G0026649.1 mouse_genomes_project 2 151261853 151308767 + MGP_AJ_P0058389 Ttll9 protein_coding nonsense_mediated_decay MGP_AJ_T0058390.1 MGP_AJ_G0026649.1 mouse_genomes_project 2 151273446 151309135 + MGP_AJ_P0058390 Ttll9 protein_coding nonsense_mediated_decay MGP_AJ_T0058391.1 MGP_AJ_G0026649.1 mouse_genomes_project 2 151274732 151285775 + MGP_AJ_P0058391 Ttll9 protein_coding protein_coding MGP_AJ_T0058392.1 MGP_AJ_G0026649.1 mouse_genomes_project 2 151290837 151300707 + Ttll9 protein_coding retained_intron MGP_AJ_T0058393.1 MGP_AJ_G0026649.1 mouse_genomes_project 2 151304630 151310267 + Ttll9 protein_coding retained_intron MGP_AJ_T0017765.1 MGP_AJ_G0015391.1 mouse_genomes_project 2 35901230 35905240 + Gm13587 processed_transcript processed_transcript MGP_AJ_T0059217.1 MGP_AJ_G0026841.1 mouse_genomes_project 2 163331324 163335116 - Acot8 protein_coding retained_intron MGP_AJ_T0059218.1 MGP_AJ_G0026841.1 mouse_genomes_project 2 163331324 163343897 - MGP_AJ_P0059218 Acot8 protein_coding protein_coding MGP_AJ_T0059219.1 MGP_AJ_G0026841.1 mouse_genomes_project 2 163331324 163343897 - MGP_AJ_P0059219 Acot8 protein_coding protein_coding MGP_AJ_T0059220.1 MGP_AJ_G0026841.1 mouse_genomes_project 2 163334434 163343896 - MGP_AJ_P0059220 Acot8 protein_coding nonsense_mediated_decay MGP_AJ_T0059221.1 MGP_AJ_G0026841.1 mouse_genomes_project 2 163338576 163343837 - Acot8 protein_coding retained_intron MGP_AJ_T0007424.1 MGP_AJ_G0006084.1 mouse_genomes_project 2 168723560 168732834 - A630075F10Rik lincRNA lincRNA MGP_AJ_T0013884.1 MGP_AJ_G0011979.1 mouse_genomes_project 2 178065068 178065641 + processed_pseudogene processed_pseudogene MGP_AJ_T0053921.1 MGP_AJ_G0025555.1 mouse_genomes_project 2 28058263 28064320 + MGP_AJ_P0053921 Tor1b protein_coding protein_coding MGP_AJ_T0053922.1 MGP_AJ_G0025555.1 mouse_genomes_project 2 28058283 28064316 + Tor1b protein_coding retained_intron MGP_AJ_T0053923.1 MGP_AJ_G0025555.1 mouse_genomes_project 2 28058295 28061799 + MGP_AJ_P0053923 Tor1b protein_coding nonsense_mediated_decay MGP_AJ_T0053924.1 MGP_AJ_G0025555.1 mouse_genomes_project 2 28058476 28062290 + Tor1b protein_coding retained_intron MGP_AJ_T0053925.1 MGP_AJ_G0025555.1 mouse_genomes_project 2 28058491 28064317 + MGP_AJ_P0053925 Tor1b protein_coding nonsense_mediated_decay MGP_AJ_T0053926.1 MGP_AJ_G0025555.1 mouse_genomes_project 2 28059056 28062178 + MGP_AJ_P0053926 Tor1b protein_coding nonsense_mediated_decay MGP_AJ_T0053927.1 MGP_AJ_G0025555.1 mouse_genomes_project 2 28060557 28062417 + Tor1b protein_coding processed_transcript MGP_AJ_T0056833.1 MGP_AJ_G0026280.1 mouse_genomes_project 2 116474285 116479146 - MGP_AJ_P0056833 Ankrd63 protein_coding protein_coding MGP_AJ_T0056381.1 MGP_AJ_G0026151.1 mouse_genomes_project 2 99236712 99247930 - MGP_AJ_P0056381 Rag1 protein_coding protein_coding MGP_AJ_T0013706.1 MGP_AJ_G0011801.1 mouse_genomes_project 2 104678075 104678573 + processed_pseudogene processed_pseudogene MGP_AJ_T0053400.1 MGP_AJ_G0025469.1 mouse_genomes_project 2 23606025 23657442 + MGP_AJ_P0053400 Gm20532 protein_coding nonsense_mediated_decay MGP_AJ_T0056511.1 MGP_AJ_G0026177.1 mouse_genomes_project 2 101791428 102066498 - MGP_AJ_P0056511 D430041D05Rik protein_coding protein_coding MGP_AJ_T0056512.1 MGP_AJ_G0026177.1 mouse_genomes_project 2 101795395 101878999 - D430041D05Rik protein_coding retained_intron MGP_AJ_T0056513.1 MGP_AJ_G0026177.1 mouse_genomes_project 2 101797126 101907279 - MGP_AJ_P0056513 D430041D05Rik protein_coding protein_coding MGP_AJ_T0056514.1 MGP_AJ_G0026177.1 mouse_genomes_project 2 101800522 101806767 - D430041D05Rik protein_coding retained_intron MGP_AJ_T0056515.1 MGP_AJ_G0026177.1 mouse_genomes_project 2 101832213 101889608 - D430041D05Rik protein_coding retained_intron MGP_AJ_T0056516.1 MGP_AJ_G0026177.1 mouse_genomes_project 2 101855086 101906445 - D430041D05Rik protein_coding retained_intron MGP_AJ_T0056517.1 MGP_AJ_G0026177.1 mouse_genomes_project 2 101903582 102066156 - MGP_AJ_P0056517 D430041D05Rik protein_coding protein_coding MGP_AJ_T0056518.1 MGP_AJ_G0026177.1 mouse_genomes_project 2 101903875 102066157 - MGP_AJ_P0056518 D430041D05Rik protein_coding protein_coding MGP_AJ_T0004116.1 MGP_AJ_G0003637.1 mouse_genomes_project 2 142315994 142317709 + 4930444E06Rik antisense antisense MGP_AJ_T0013596.1 MGP_AJ_G0011691.1 mouse_genomes_project 2 69971386 69972543 + processed_pseudogene processed_pseudogene MGP_AJ_T0003910.1 MGP_AJ_G0003493.1 mouse_genomes_project 2 16666002 16668945 - Gm13348 antisense antisense MGP_AJ_T0017881.1 MGP_AJ_G0015455.1 mouse_genomes_project 2 150630616 150663074 + Gm14164 processed_transcript processed_transcript MGP_AJ_T0017882.1 MGP_AJ_G0015455.1 mouse_genomes_project 2 150662496 150662898 + Gm14164 processed_transcript processed_transcript MGP_AJ_T0055891.1 MGP_AJ_G0026025.1 mouse_genomes_project 2 86328626 86330616 + MGP_AJ_P0055891 Olfr1193 protein_coding protein_coding MGP_AJ_T0055991.1 MGP_AJ_G0026092.1 mouse_genomes_project 2 88349289 88386945 + MGP_AJ_P0055991 Fnbp4 protein_coding protein_coding MGP_AJ_T0055992.1 MGP_AJ_G0026092.1 mouse_genomes_project 2 88349523 88381747 + Fnbp4 protein_coding processed_transcript MGP_AJ_T0055993.1 MGP_AJ_G0026092.1 mouse_genomes_project 2 88356194 88362857 + Fnbp4 protein_coding processed_transcript MGP_AJ_T0055994.1 MGP_AJ_G0026092.1 mouse_genomes_project 2 88363006 88369178 + Fnbp4 protein_coding processed_transcript MGP_AJ_T0055995.1 MGP_AJ_G0026092.1 mouse_genomes_project 2 88363809 88373249 + Fnbp4 protein_coding processed_transcript MGP_AJ_T0055996.1 MGP_AJ_G0026092.1 mouse_genomes_project 2 88368865 88373470 + Fnbp4 protein_coding processed_transcript MGP_AJ_T0055997.1 MGP_AJ_G0026092.1 mouse_genomes_project 2 88373498 88381641 + Fnbp4 protein_coding processed_transcript MGP_AJ_T0055998.1 MGP_AJ_G0026092.1 mouse_genomes_project 2 88374055 88381730 + Fnbp4 protein_coding processed_transcript MGP_AJ_T0055999.1 MGP_AJ_G0026092.1 mouse_genomes_project 2 88380814 88381638 + Fnbp4 protein_coding processed_transcript MGP_AJ_T0058042.1 MGP_AJ_G0026545.1 mouse_genomes_project 2 142323001 142344226 - MGP_AJ_P0058042 Snx5 protein_coding protein_coding MGP_AJ_T0058043.1 MGP_AJ_G0026545.1 mouse_genomes_project 2 142323001 142343892 - MGP_AJ_P0058043 Snx5 protein_coding protein_coding MGP_AJ_T0058044.1 MGP_AJ_G0026545.1 mouse_genomes_project 2 142323942 142326719 - Snx5 protein_coding processed_transcript MGP_AJ_T0058045.1 MGP_AJ_G0026545.1 mouse_genomes_project 2 142323994 142325691 - Snx5 protein_coding processed_transcript MGP_AJ_T0058046.1 MGP_AJ_G0026545.1 mouse_genomes_project 2 142326738 142328536 - Snx5 protein_coding processed_transcript MGP_AJ_T0058047.1 MGP_AJ_G0026545.1 mouse_genomes_project 2 142327704 142328515 - Snx5 protein_coding processed_transcript MGP_AJ_T0058048.1 MGP_AJ_G0026545.1 mouse_genomes_project 2 142327807 142333842 - Snx5 protein_coding processed_transcript MGP_AJ_T0058049.1 MGP_AJ_G0026545.1 mouse_genomes_project 2 142342773 142344104 - Snx5 protein_coding processed_transcript MGP_AJ_T0007294.1 MGP_AJ_G0005977.1 mouse_genomes_project 2 104254328 104260378 - Gm14014 lincRNA lincRNA MGP_AJ_T0003946.1 MGP_AJ_G0003519.1 mouse_genomes_project 2 28751583 28758720 - Gm13425 antisense antisense MGP_AJ_T0003891.1 MGP_AJ_G0003477.1 mouse_genomes_project 2 2020356 2024210 + 4930551O13Rik antisense antisense MGP_AJ_T0017771.1 MGP_AJ_G0015395.1 mouse_genomes_project 2 54513125 54516923 + processed_transcript processed_transcript MGP_AJ_T0004120.1 MGP_AJ_G0003641.1 mouse_genomes_project 2 145291394 145449837 + antisense antisense MGP_AJ_T0058430.1 MGP_AJ_G0026657.1 mouse_genomes_project 2 151595598 151643730 + MGP_AJ_P0058430 Kif3b protein_coding protein_coding MGP_AJ_T0052906.1 MGP_AJ_G0025382.1 mouse_genomes_project 2 21154127 21164304 + MGP_AJ_P0052906 Il1f6 protein_coding protein_coding MGP_AJ_T0052907.1 MGP_AJ_G0025382.1 mouse_genomes_project 2 21154214 21164127 + Il1f6 protein_coding processed_transcript MGP_AJ_T0055749.1 MGP_AJ_G0025899.1 mouse_genomes_project 2 82784460 82785405 - MGP_AJ_P0055749 Olfr993 protein_coding protein_coding MGP_AJ_T0102482.1 MGP_AJ_G0040224.1 mouse_genomes_project 2 83870090 83871033 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0053123.1 MGP_AJ_G0025418.1 mouse_genomes_project 2 22342544 22348352 - MGP_AJ_P0053123 Uap1l1 protein_coding protein_coding MGP_AJ_T0053124.1 MGP_AJ_G0025418.1 mouse_genomes_project 2 22344144 22345388 - Uap1l1 protein_coding processed_transcript MGP_AJ_T0053125.1 MGP_AJ_G0025418.1 mouse_genomes_project 2 22344145 22346368 - Uap1l1 protein_coding processed_transcript MGP_AJ_T0053126.1 MGP_AJ_G0025418.1 mouse_genomes_project 2 22344149 22346798 - Uap1l1 protein_coding processed_transcript MGP_AJ_T0053127.1 MGP_AJ_G0025418.1 mouse_genomes_project 2 22346001 22347327 - Uap1l1 protein_coding processed_transcript MGP_AJ_T0053128.1 MGP_AJ_G0025418.1 mouse_genomes_project 2 22346787 22348285 - Uap1l1 protein_coding processed_transcript MGP_AJ_T0099768.1 MGP_AJ_G0037734.1 mouse_genomes_project 2 73073646 73073745 - Gm24996 snRNA snRNA MGP_AJ_T0099759.1 MGP_AJ_G0037725.1 mouse_genomes_project 2 36279125 36279232 + Gm26127 snRNA snRNA MGP_AJ_T0052894.1 MGP_AJ_G0025378.1 mouse_genomes_project 2 20442024 20514536 - MGP_AJ_P0052894 Spopl protein_coding protein_coding MGP_AJ_T0052895.1 MGP_AJ_G0025378.1 mouse_genomes_project 2 20446476 20514510 - MGP_AJ_P0052895 Spopl protein_coding nonsense_mediated_decay MGP_AJ_T0052896.1 MGP_AJ_G0025378.1 mouse_genomes_project 2 20447074 20514410 - MGP_AJ_P0052896 Spopl protein_coding nonsense_mediated_decay MGP_AJ_T0052897.1 MGP_AJ_G0025378.1 mouse_genomes_project 2 20447338 20451028 - Spopl protein_coding retained_intron MGP_AJ_T0052898.1 MGP_AJ_G0025378.1 mouse_genomes_project 2 20453607 20479981 - Spopl protein_coding retained_intron MGP_AJ_T0052899.1 MGP_AJ_G0025378.1 mouse_genomes_project 2 20485723 20514538 - MGP_AJ_P0052899 Spopl protein_coding nonsense_mediated_decay MGP_AJ_T0055258.1 MGP_AJ_G0025797.1 mouse_genomes_project 2 68515772 68567985 + MGP_AJ_P0055258 Dync1i2 protein_coding protein_coding MGP_AJ_T0055259.1 MGP_AJ_G0025797.1 mouse_genomes_project 2 68515807 68567981 + MGP_AJ_P0055259 Dync1i2 protein_coding protein_coding MGP_AJ_T0055260.1 MGP_AJ_G0025797.1 mouse_genomes_project 2 68515807 68567990 + MGP_AJ_P0055260 Dync1i2 protein_coding protein_coding MGP_AJ_T0055261.1 MGP_AJ_G0025797.1 mouse_genomes_project 2 68515824 68567978 + MGP_AJ_P0055261 Dync1i2 protein_coding protein_coding MGP_AJ_T0055262.1 MGP_AJ_G0025797.1 mouse_genomes_project 2 68515872 68551993 + Dync1i2 protein_coding processed_transcript MGP_AJ_T0055263.1 MGP_AJ_G0025797.1 mouse_genomes_project 2 68515900 68567990 + MGP_AJ_P0055263 Dync1i2 protein_coding protein_coding MGP_AJ_T0055264.1 MGP_AJ_G0025797.1 mouse_genomes_project 2 68516038 68567984 + MGP_AJ_P0055264 Dync1i2 protein_coding protein_coding MGP_AJ_T0055265.1 MGP_AJ_G0025797.1 mouse_genomes_project 2 68516050 68567546 + MGP_AJ_P0055265 Dync1i2 protein_coding protein_coding MGP_AJ_T0055266.1 MGP_AJ_G0025797.1 mouse_genomes_project 2 68516058 68567990 + MGP_AJ_P0055266 Dync1i2 protein_coding protein_coding MGP_AJ_T0055267.1 MGP_AJ_G0025797.1 mouse_genomes_project 2 68516070 68535544 + Dync1i2 protein_coding retained_intron MGP_AJ_T0055268.1 MGP_AJ_G0025797.1 mouse_genomes_project 2 68539668 68565030 + Dync1i2 protein_coding retained_intron MGP_AJ_T0055269.1 MGP_AJ_G0025797.1 mouse_genomes_project 2 68565231 68567745 + Dync1i2 protein_coding retained_intron MGP_AJ_T0010409.1 MGP_AJ_G0008531.1 mouse_genomes_project 2 36083981 36084070 + Mir181b-2 miRNA miRNA MGP_AJ_T0059210.1 MGP_AJ_G0026840.1 mouse_genomes_project 2 163324375 163331044 + MGP_AJ_P0059210 Snx21 protein_coding protein_coding MGP_AJ_T0059211.1 MGP_AJ_G0026840.1 mouse_genomes_project 2 163324543 163332367 + MGP_AJ_P0059211 Snx21 protein_coding protein_coding MGP_AJ_T0059212.1 MGP_AJ_G0026840.1 mouse_genomes_project 2 163324543 163331609 + MGP_AJ_P0059212 Snx21 protein_coding protein_coding MGP_AJ_T0059213.1 MGP_AJ_G0026840.1 mouse_genomes_project 2 163324569 163326185 + MGP_AJ_P0059213 Snx21 protein_coding protein_coding MGP_AJ_T0059214.1 MGP_AJ_G0026840.1 mouse_genomes_project 2 163325346 163331181 + MGP_AJ_P0059214 Snx21 protein_coding protein_coding MGP_AJ_T0059215.1 MGP_AJ_G0026840.1 mouse_genomes_project 2 163328967 163332373 + Snx21 protein_coding retained_intron MGP_AJ_T0059216.1 MGP_AJ_G0026840.1 mouse_genomes_project 2 163330208 163332365 + Snx21 protein_coding processed_transcript MGP_AJ_T0004012.1 MGP_AJ_G0003568.1 mouse_genomes_project 2 70737307 70744099 + Gm13703 antisense antisense MGP_AJ_T0101039.1 MGP_AJ_G0039005.1 mouse_genomes_project 2 58581869 58582001 + Gm26422 snoRNA snoRNA MGP_AJ_T0007246.1 MGP_AJ_G0005938.1 mouse_genomes_project 2 72511368 72524317 - Gm13652 lincRNA lincRNA MGP_AJ_T0010492.1 MGP_AJ_G0008614.1 mouse_genomes_project 2 179745876 179745944 + Mir124a-3 miRNA miRNA MGP_AJ_T0055377.1 MGP_AJ_G0025819.1 mouse_genomes_project 2 71201848 71233953 - MGP_AJ_P0055377 protein_coding protein_coding MGP_AJ_T0055378.1 MGP_AJ_G0025819.1 mouse_genomes_project 2 71201848 71282549 - MGP_AJ_P0055378 protein_coding protein_coding MGP_AJ_T0055379.1 MGP_AJ_G0025819.1 mouse_genomes_project 2 71201848 71282454 - MGP_AJ_P0055379 protein_coding protein_coding MGP_AJ_T0055380.1 MGP_AJ_G0025819.1 mouse_genomes_project 2 71201848 71282530 - MGP_AJ_P0055380 protein_coding protein_coding MGP_AJ_T0055381.1 MGP_AJ_G0025819.1 mouse_genomes_project 2 71201848 71282557 - MGP_AJ_P0055381 protein_coding protein_coding MGP_AJ_T0055382.1 MGP_AJ_G0025819.1 mouse_genomes_project 2 71201848 71282532 - MGP_AJ_P0055382 protein_coding protein_coding MGP_AJ_T0055383.1 MGP_AJ_G0025819.1 mouse_genomes_project 2 71201859 71282546 - protein_coding processed_transcript MGP_AJ_T0055384.1 MGP_AJ_G0025819.1 mouse_genomes_project 2 71201863 71251735 - MGP_AJ_P0055384 protein_coding protein_coding MGP_AJ_T0055385.1 MGP_AJ_G0025819.1 mouse_genomes_project 2 71203601 71282473 - MGP_AJ_P0055385 protein_coding protein_coding MGP_AJ_T0055386.1 MGP_AJ_G0025819.1 mouse_genomes_project 2 71204157 71251683 - MGP_AJ_P0055386 protein_coding nonsense_mediated_decay MGP_AJ_T0055387.1 MGP_AJ_G0025819.1 mouse_genomes_project 2 71204358 71241614 - MGP_AJ_P0055387 protein_coding unknown_likely_coding MGP_AJ_T0055388.1 MGP_AJ_G0025819.1 mouse_genomes_project 2 71211941 71282531 - protein_coding processed_transcript MGP_AJ_T0055389.1 MGP_AJ_G0025819.1 mouse_genomes_project 2 71215383 71282448 - MGP_AJ_P0055389 protein_coding protein_coding MGP_AJ_T0055390.1 MGP_AJ_G0025819.1 mouse_genomes_project 2 71232393 71282546 - protein_coding processed_transcript MGP_AJ_T0055391.1 MGP_AJ_G0025819.1 mouse_genomes_project 2 71232963 71282511 - MGP_AJ_P0055391 protein_coding protein_coding MGP_AJ_T0055392.1 MGP_AJ_G0025819.1 mouse_genomes_project 2 71232964 71282471 - MGP_AJ_P0055392 protein_coding protein_coding MGP_AJ_T0055393.1 MGP_AJ_G0025819.1 mouse_genomes_project 2 71233364 71238235 - protein_coding processed_transcript MGP_AJ_T0055394.1 MGP_AJ_G0025819.1 mouse_genomes_project 2 71251320 71282512 - protein_coding processed_transcript MGP_AJ_T0055395.1 MGP_AJ_G0025819.1 mouse_genomes_project 2 71251413 71282546 - protein_coding processed_transcript MGP_AJ_T0055396.1 MGP_AJ_G0025819.1 mouse_genomes_project 2 71262821 71282468 - protein_coding processed_transcript MGP_AJ_T0011521.1 MGP_AJ_G0009643.1 mouse_genomes_project 2 157002608 157002694 + Gm24379 misc_RNA misc_RNA MGP_AJ_T0055100.1 MGP_AJ_G0025763.1 mouse_genomes_project 2 64687469 64701708 + MGP_AJ_P0055100 Gm21830 protein_coding protein_coding MGP_AJ_T0055882.1 MGP_AJ_G0026018.1 mouse_genomes_project 2 86072690 86075140 - MGP_AJ_P0055882 protein_coding protein_coding MGP_AJ_T0055883.1 MGP_AJ_G0026018.1 mouse_genomes_project 2 86072909 86075123 - protein_coding processed_transcript MGP_AJ_T0013684.1 MGP_AJ_G0011779.1 mouse_genomes_project 2 99796423 99796859 + processed_pseudogene processed_pseudogene MGP_AJ_T0059184.1 MGP_AJ_G0026826.1 mouse_genomes_project 2 163113187 163118264 - MGP_AJ_P0059184 Wfdc6b protein_coding protein_coding MGP_AJ_T0055437.1 MGP_AJ_G0025833.1 mouse_genomes_project 2 72206514 72259206 + MGP_AJ_P0055437 Mtx2 protein_coding protein_coding MGP_AJ_T0055438.1 MGP_AJ_G0025833.1 mouse_genomes_project 2 72206541 72249585 + Mtx2 protein_coding retained_intron MGP_AJ_T0055439.1 MGP_AJ_G0025833.1 mouse_genomes_project 2 72249751 72257279 + Mtx2 protein_coding retained_intron MGP_AJ_T0013660.1 MGP_AJ_G0011755.1 mouse_genomes_project 2 88956910 88957078 - processed_pseudogene processed_pseudogene MGP_AJ_T0011505.1 MGP_AJ_G0009627.1 mouse_genomes_project 2 75985491 75985721 - Gm23149 misc_RNA misc_RNA MGP_AJ_T0007281.1 MGP_AJ_G0005967.1 mouse_genomes_project 2 99479603 99490604 + Gm13905 lincRNA lincRNA MGP_AJ_T0010395.1 MGP_AJ_G0008517.1 mouse_genomes_project 2 29187306 29187369 + Mir7674 miRNA miRNA MGP_AJ_T0017726.1 MGP_AJ_G0015369.1 mouse_genomes_project 2 11147837 11151440 - Stamos processed_transcript antisense MGP_AJ_T0017727.1 MGP_AJ_G0015369.1 mouse_genomes_project 2 11149993 11151354 - Stamos processed_transcript retained_intron MGP_AJ_T0054525.1 MGP_AJ_G0025669.1 mouse_genomes_project 2 34563757 34573628 - MGP_AJ_P0054525 Pdcl protein_coding protein_coding MGP_AJ_T0054526.1 MGP_AJ_G0025669.1 mouse_genomes_project 2 34564271 34573549 - MGP_AJ_P0054526 Pdcl protein_coding protein_coding MGP_AJ_T0054527.1 MGP_AJ_G0025669.1 mouse_genomes_project 2 34565802 34573485 - MGP_AJ_P0054527 Pdcl protein_coding nonsense_mediated_decay MGP_AJ_T0054528.1 MGP_AJ_G0025669.1 mouse_genomes_project 2 34565841 34573492 - MGP_AJ_P0054528 Pdcl protein_coding protein_coding MGP_AJ_T0003935.1 MGP_AJ_G0003510.1 mouse_genomes_project 2 24215288 24260627 + Sardhos antisense antisense MGP_AJ_T0010470.1 MGP_AJ_G0008592.1 mouse_genomes_project 2 156077469 156077556 - Gm23134 miRNA miRNA MGP_AJ_T0013805.1 MGP_AJ_G0011900.1 mouse_genomes_project 2 145249582 145250383 - processed_pseudogene processed_pseudogene MGP_AJ_T0056716.1 MGP_AJ_G0026252.1 mouse_genomes_project 2 110195617 110213323 + MGP_AJ_P0056716 Emc7 protein_coding protein_coding MGP_AJ_T0013480.1 MGP_AJ_G0011575.1 mouse_genomes_project 2 28778502 28779446 + processed_pseudogene processed_pseudogene MGP_AJ_T0054519.1 MGP_AJ_G0025663.1 mouse_genomes_project 2 34289944 34290913 - MGP_AJ_P0054519 Olfr361 protein_coding protein_coding MGP_AJ_T0054222.1 MGP_AJ_G0025598.1 mouse_genomes_project 2 29913131 29931985 - MGP_AJ_P0054222 Ttc16 protein_coding protein_coding MGP_AJ_T0054231.1 MGP_AJ_G0025598.1 mouse_genomes_project 2 29918781 29932186 - MGP_AJ_P0054231 Ttc16 protein_coding protein_coding MGP_AJ_T0054232.1 MGP_AJ_G0025598.1 mouse_genomes_project 2 29918944 29931950 - MGP_AJ_P0054232 Ttc16 protein_coding protein_coding MGP_AJ_T0054233.1 MGP_AJ_G0025598.1 mouse_genomes_project 2 29920732 29932235 - MGP_AJ_P0054233 Ttc16 protein_coding nonsense_mediated_decay MGP_AJ_T0054234.1 MGP_AJ_G0025598.1 mouse_genomes_project 2 29929361 29932189 - Ttc16 protein_coding retained_intron MGP_AJ_T0054235.1 MGP_AJ_G0025598.1 mouse_genomes_project 2 29931108 29932233 - MGP_AJ_P0054235 Ttc16 protein_coding protein_coding MGP_AJ_T0054815.1 MGP_AJ_G0025714.1 mouse_genomes_project 2 50481372 50537671 - MGP_AJ_P0054815 Prpf40a protein_coding protein_coding MGP_AJ_T0054816.1 MGP_AJ_G0025714.1 mouse_genomes_project 2 50485850 50491996 - Prpf40a protein_coding processed_transcript MGP_AJ_T0054817.1 MGP_AJ_G0025714.1 mouse_genomes_project 2 50499778 50537730 - MGP_AJ_P0054817 Prpf40a protein_coding protein_coding MGP_AJ_T0054818.1 MGP_AJ_G0025714.1 mouse_genomes_project 2 50518836 50537650 - Prpf40a protein_coding processed_transcript MGP_AJ_T0054819.1 MGP_AJ_G0025714.1 mouse_genomes_project 2 50522609 50537671 - Prpf40a protein_coding processed_transcript MGP_AJ_T0013605.1 MGP_AJ_G0011700.1 mouse_genomes_project 2 73023040 73023785 - processed_pseudogene processed_pseudogene MGP_AJ_T0013409.1 MGP_AJ_G0011504.1 mouse_genomes_project 2 1055511 1056075 - processed_pseudogene processed_pseudogene MGP_AJ_T0017847.1 MGP_AJ_G0015439.1 mouse_genomes_project 2 120527591 120529718 + processed_transcript processed_transcript MGP_AJ_T0017848.1 MGP_AJ_G0015439.1 mouse_genomes_project 2 120527612 120540937 + processed_transcript processed_transcript MGP_AJ_T0057243.1 MGP_AJ_G0026354.1 mouse_genomes_project 2 119257127 119273957 - MGP_AJ_P0057243 Serinc4 protein_coding nonsense_mediated_decay MGP_AJ_T0057251.1 MGP_AJ_G0026354.1 mouse_genomes_project 2 119269270 119274820 - MGP_AJ_P0057251 Serinc4 protein_coding protein_coding MGP_AJ_T0057252.1 MGP_AJ_G0026354.1 mouse_genomes_project 2 119269270 119274908 - MGP_AJ_P0057252 Serinc4 protein_coding protein_coding MGP_AJ_T0057253.1 MGP_AJ_G0026354.1 mouse_genomes_project 2 119269282 119273957 - MGP_AJ_P0057253 Serinc4 protein_coding nonsense_mediated_decay MGP_AJ_T0057254.1 MGP_AJ_G0026354.1 mouse_genomes_project 2 119269340 119273951 - MGP_AJ_P0057254 Serinc4 protein_coding nonsense_mediated_decay MGP_AJ_T0057255.1 MGP_AJ_G0026354.1 mouse_genomes_project 2 119270248 119271848 - Serinc4 protein_coding retained_intron MGP_AJ_T0004019.1 MGP_AJ_G0003573.1 mouse_genomes_project 2 71041838 71043832 + Chn1os1 antisense antisense MGP_AJ_T0017815.1 MGP_AJ_G0015426.1 mouse_genomes_project 2 102220395 102229239 + Platr14 processed_transcript processed_transcript MGP_AJ_T0017816.1 MGP_AJ_G0015426.1 mouse_genomes_project 2 102220411 102229236 + Platr14 processed_transcript processed_transcript MGP_AJ_T0017817.1 MGP_AJ_G0015426.1 mouse_genomes_project 2 102220416 102232612 + Platr14 processed_transcript processed_transcript MGP_AJ_T0017818.1 MGP_AJ_G0015426.1 mouse_genomes_project 2 102220424 102229312 + Platr14 processed_transcript processed_transcript MGP_AJ_T0017819.1 MGP_AJ_G0015426.1 mouse_genomes_project 2 102220691 102229233 + Platr14 processed_transcript processed_transcript MGP_AJ_T0017820.1 MGP_AJ_G0015426.1 mouse_genomes_project 2 102228379 102230015 + Platr14 processed_transcript processed_transcript MGP_AJ_T0058742.1 MGP_AJ_G0026724.1 mouse_genomes_project 2 154590453 154619349 - MGP_AJ_P0058742 Nfs1 protein_coding protein_coding MGP_AJ_T0058743.1 MGP_AJ_G0026724.1 mouse_genomes_project 2 154590464 154614216 - MGP_AJ_P0058743 Nfs1 protein_coding protein_coding MGP_AJ_T0058744.1 MGP_AJ_G0026724.1 mouse_genomes_project 2 154612913 154619316 - Nfs1 protein_coding retained_intron MGP_AJ_T0058745.1 MGP_AJ_G0026724.1 mouse_genomes_project 2 154616259 154619343 - MGP_AJ_P0058745 Nfs1 protein_coding protein_coding MGP_AJ_T0102497.1 MGP_AJ_G0040239.1 mouse_genomes_project 2 85632750 85633701 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0007313.1 MGP_AJ_G0005991.1 mouse_genomes_project 2 114729171 114733022 - Gm29340 lincRNA lincRNA MGP_AJ_T0053458.1 MGP_AJ_G0025479.1 mouse_genomes_project 2 23947571 23961459 - MGP_AJ_P0053458 Surf4 protein_coding protein_coding MGP_AJ_T0053459.1 MGP_AJ_G0025479.1 mouse_genomes_project 2 23949493 23960914 - MGP_AJ_P0053459 Surf4 protein_coding nonsense_mediated_decay MGP_AJ_T0053460.1 MGP_AJ_G0025479.1 mouse_genomes_project 2 23952500 23961312 - MGP_AJ_P0053460 Surf4 protein_coding protein_coding MGP_AJ_T0017880.1 MGP_AJ_G0015454.1 mouse_genomes_project 2 148873279 148874721 + E130215H24Rik processed_transcript processed_transcript MGP_AJ_T0058165.1 MGP_AJ_G0026572.1 mouse_genomes_project 2 146567599 146574635 - MGP_AJ_P0058165 Cd93 protein_coding protein_coding MGP_AJ_T0058332.1 MGP_AJ_G0026625.1 mouse_genomes_project 2 150698091 150701100 - MGP_AJ_P0058332 Zcchc3 protein_coding protein_coding MGP_AJ_T0056694.1 MGP_AJ_G0026242.1 mouse_genomes_project 2 109805136 109806072 - MGP_AJ_P0056694 Olfr1313 protein_coding protein_coding MGP_AJ_T0013456.1 MGP_AJ_G0011551.1 mouse_genomes_project 2 18482916 18483537 - processed_pseudogene processed_pseudogene MGP_AJ_T0056454.1 MGP_AJ_G0026166.1 mouse_genomes_project 2 101197623 101349930 + MGP_AJ_P0056454 Abtb2 protein_coding protein_coding MGP_AJ_T0056455.1 MGP_AJ_G0026166.1 mouse_genomes_project 2 101346541 101348724 + Abtb2 protein_coding processed_transcript MGP_AJ_T0056456.1 MGP_AJ_G0026166.1 mouse_genomes_project 2 101346587 101349930 + Abtb2 protein_coding processed_transcript MGP_AJ_T0054195.1 MGP_AJ_G0025594.1 mouse_genomes_project 2 29834667 29846244 - MGP_AJ_P0054195 Fpgs protein_coding protein_coding MGP_AJ_T0054196.1 MGP_AJ_G0025594.1 mouse_genomes_project 2 29834668 29846194 - Fpgs protein_coding retained_intron MGP_AJ_T0054197.1 MGP_AJ_G0025594.1 mouse_genomes_project 2 29834875 29838015 - Fpgs protein_coding retained_intron MGP_AJ_T0054198.1 MGP_AJ_G0025594.1 mouse_genomes_project 2 29835360 29837063 - Fpgs protein_coding processed_transcript MGP_AJ_T0054199.1 MGP_AJ_G0025594.1 mouse_genomes_project 2 29838560 29839561 - Fpgs protein_coding retained_intron MGP_AJ_T0054200.1 MGP_AJ_G0025594.1 mouse_genomes_project 2 29838907 29856319 - MGP_AJ_P0054200 Fpgs protein_coding nonsense_mediated_decay MGP_AJ_T0054201.1 MGP_AJ_G0025594.1 mouse_genomes_project 2 29839072 29839896 - Fpgs protein_coding retained_intron MGP_AJ_T0054202.1 MGP_AJ_G0025594.1 mouse_genomes_project 2 29839474 29856327 - MGP_AJ_P0054202 Fpgs protein_coding protein_coding MGP_AJ_T0054203.1 MGP_AJ_G0025594.1 mouse_genomes_project 2 29844509 29845303 - Fpgs protein_coding retained_intron MGP_AJ_T0054204.1 MGP_AJ_G0025594.1 mouse_genomes_project 2 29844771 29856213 - MGP_AJ_P0054204 Fpgs protein_coding protein_coding MGP_AJ_T0059551.1 MGP_AJ_G0026904.1 mouse_genomes_project 2 169261285 169283703 - MGP_AJ_P0059551 4930470P17Rik protein_coding protein_coding MGP_AJ_T0007346.1 MGP_AJ_G0006019.1 mouse_genomes_project 2 135377570 135422277 + Gm14055 lincRNA lincRNA MGP_AJ_T0059477.1 MGP_AJ_G0026890.1 mouse_genomes_project 2 166814318 166863249 - MGP_AJ_P0059477 Gm20716 protein_coding nonsense_mediated_decay MGP_AJ_T0054938.1 MGP_AJ_G0025736.1 mouse_genomes_project 2 57527302 57561332 - MGP_AJ_P0054938 Cd302 protein_coding protein_coding MGP_AJ_T0054939.1 MGP_AJ_G0025736.1 mouse_genomes_project 2 57527302 57561262 - MGP_AJ_P0054939 Cd302 protein_coding protein_coding MGP_AJ_T0013557.1 MGP_AJ_G0011652.1 mouse_genomes_project 2 55654096 55654578 + processed_pseudogene processed_pseudogene MGP_AJ_T0004135.1 MGP_AJ_G0003655.1 mouse_genomes_project 2 154047092 154048813 + Gssos2 antisense antisense MGP_AJ_T0004136.1 MGP_AJ_G0003655.1 mouse_genomes_project 2 154047842 154048799 + Gssos2 antisense antisense MGP_AJ_T0004092.1 MGP_AJ_G0003623.1 mouse_genomes_project 2 130180638 130265021 + Gm14051 antisense antisense MGP_AJ_T0054439.1 MGP_AJ_G0025630.1 mouse_genomes_project 2 32550937 32564254 - MGP_AJ_P0054439 4930568D16Rik protein_coding protein_coding MGP_AJ_T0010461.1 MGP_AJ_G0008583.1 mouse_genomes_project 2 142707401 142707492 - Gm24823 miRNA miRNA MGP_AJ_T0101092.1 MGP_AJ_G0039058.1 mouse_genomes_project 2 159525339 159525464 + Gm25561 snoRNA snoRNA MGP_AJ_T0057496.1 MGP_AJ_G0026414.1 mouse_genomes_project 2 125119338 125124011 - MGP_AJ_P0057496 Itpripl1 protein_coding protein_coding MGP_AJ_T0057497.1 MGP_AJ_G0026414.1 mouse_genomes_project 2 125120977 125123874 - MGP_AJ_P0057497 Itpripl1 protein_coding protein_coding MGP_AJ_T0057498.1 MGP_AJ_G0026414.1 mouse_genomes_project 2 125121097 125123159 - MGP_AJ_P0057498 Itpripl1 protein_coding protein_coding MGP_AJ_T0059520.1 MGP_AJ_G0026897.1 mouse_genomes_project 2 167540518 167604708 - MGP_AJ_P0059520 Zfp64 protein_coding protein_coding MGP_AJ_T0059521.1 MGP_AJ_G0026897.1 mouse_genomes_project 2 167554455 167560291 - MGP_AJ_P0059521 Zfp64 protein_coding protein_coding MGP_AJ_T0059522.1 MGP_AJ_G0026897.1 mouse_genomes_project 2 167573552 167604393 - MGP_AJ_P0059522 Zfp64 protein_coding protein_coding MGP_AJ_T0059523.1 MGP_AJ_G0026897.1 mouse_genomes_project 2 167584068 167604410 - MGP_AJ_P0059523 Zfp64 protein_coding protein_coding MGP_AJ_T0059524.1 MGP_AJ_G0026897.1 mouse_genomes_project 2 167599643 167604387 - Zfp64 protein_coding retained_intron MGP_AJ_T0013579.1 MGP_AJ_G0011674.1 mouse_genomes_project 2 63795765 63796953 - processed_pseudogene processed_pseudogene MGP_AJ_T0099784.1 MGP_AJ_G0037750.1 mouse_genomes_project 2 124598318 124598467 - Gm23753 snRNA snRNA MGP_AJ_T0007438.1 MGP_AJ_G0006097.1 mouse_genomes_project 2 179210958 179226535 - B230312C02Rik lincRNA lincRNA MGP_AJ_T0013793.1 MGP_AJ_G0011888.1 mouse_genomes_project 2 142334431 142334739 - processed_pseudogene processed_pseudogene MGP_AJ_T0057298.1 MGP_AJ_G0026365.1 mouse_genomes_project 2 119893883 119920469 + MGP_AJ_P0057298 Eif3j2 protein_coding protein_coding MGP_AJ_T0017793.1 MGP_AJ_G0015414.1 mouse_genomes_project 2 86244731 86249553 + Gm13759 processed_transcript processed_transcript MGP_AJ_T0013830.1 MGP_AJ_G0011925.1 mouse_genomes_project 2 153287665 153308050 - processed_pseudogene processed_pseudogene MGP_AJ_T0059680.1 MGP_AJ_G0026945.1 mouse_genomes_project 2 177248666 177303258 + MGP_AJ_P0059680 Cdh26 protein_coding protein_coding MGP_AJ_T0059681.1 MGP_AJ_G0026945.1 mouse_genomes_project 2 177248742 177303260 + MGP_AJ_P0059681 Cdh26 protein_coding protein_coding MGP_AJ_T0059682.1 MGP_AJ_G0026945.1 mouse_genomes_project 2 177275773 177282468 + Cdh26 protein_coding retained_intron MGP_AJ_T0098658.1 MGP_AJ_G0036642.1 mouse_genomes_project 2 118458826 118458951 - n-R5s205 rRNA rRNA MGP_AJ_T0058089.1 MGP_AJ_G0026555.1 mouse_genomes_project 2 142688662 142858100 + MGP_AJ_P0058089 Dtd1 protein_coding protein_coding MGP_AJ_T0058090.1 MGP_AJ_G0026555.1 mouse_genomes_project 2 142705877 142857782 + Dtd1 protein_coding processed_transcript MGP_AJ_T0058091.1 MGP_AJ_G0026555.1 mouse_genomes_project 2 142766370 142836409 + Dtd1 protein_coding processed_transcript MGP_AJ_T0058092.1 MGP_AJ_G0026555.1 mouse_genomes_project 2 142821143 142857836 + Dtd1 protein_coding processed_transcript MGP_AJ_T0058093.1 MGP_AJ_G0026555.1 mouse_genomes_project 2 142827753 142857617 + Dtd1 protein_coding processed_transcript MGP_AJ_T0013609.1 MGP_AJ_G0011704.1 mouse_genomes_project 2 74756387 74756993 + processed_pseudogene processed_pseudogene MGP_AJ_T0058974.1 MGP_AJ_G0026766.1 mouse_genomes_project 2 157289710 157308395 + MGP_AJ_P0058974 Fam83d protein_coding protein_coding MGP_AJ_T0058975.1 MGP_AJ_G0026766.1 mouse_genomes_project 2 157303165 157308395 + Fam83d protein_coding retained_intron MGP_AJ_T0055780.1 MGP_AJ_G0025929.1 mouse_genomes_project 2 83562760 83563720 - MGP_AJ_P0055780 Olfr52 protein_coding protein_coding MGP_AJ_T0098441.1 MGP_AJ_G0036425.1 mouse_genomes_project 2 100733362 100733845 + pseudogene pseudogene MGP_AJ_T0013553.1 MGP_AJ_G0011648.1 mouse_genomes_project 2 54543111 54543300 - processed_pseudogene processed_pseudogene MGP_AJ_T0059192.1 MGP_AJ_G0026831.1 mouse_genomes_project 2 163191054 163192377 + MGP_AJ_P0059192 Wfdc10 protein_coding protein_coding MGP_AJ_T0059141.1 MGP_AJ_G0026812.1 mouse_genomes_project 2 162841270 162842973 + MGP_AJ_P0059141 Svs6 protein_coding protein_coding MGP_AJ_T0053189.1 MGP_AJ_G0025427.1 mouse_genomes_project 2 22476593 22479660 - MGP_AJ_P0053189 Lcn12 protein_coding protein_coding MGP_AJ_T0053190.1 MGP_AJ_G0025427.1 mouse_genomes_project 2 22476595 22479182 - MGP_AJ_P0053190 Lcn12 protein_coding protein_coding MGP_AJ_T0007420.1 MGP_AJ_G0006081.1 mouse_genomes_project 2 168058886 168065174 - 4930529I22Rik lincRNA lincRNA MGP_AJ_T0013862.1 MGP_AJ_G0011957.1 mouse_genomes_project 2 161517643 161518751 - processed_pseudogene processed_pseudogene MGP_AJ_T0010354.1 MGP_AJ_G0008476.1 mouse_genomes_project 2 7531895 7531998 + Gm22239 miRNA miRNA MGP_AJ_T0056256.1 MGP_AJ_G0026126.1 mouse_genomes_project 2 90008303 90014845 + Pex16 protein_coding processed_transcript MGP_AJ_T0056257.1 MGP_AJ_G0026126.1 mouse_genomes_project 2 90008933 90014846 + MGP_AJ_P0056257 Pex16 protein_coding protein_coding MGP_AJ_T0056258.1 MGP_AJ_G0026126.1 mouse_genomes_project 2 90009120 90012950 + Pex16 protein_coding processed_transcript MGP_AJ_T0056259.1 MGP_AJ_G0026126.1 mouse_genomes_project 2 90009186 90010331 + Pex16 protein_coding processed_transcript MGP_AJ_T0011502.1 MGP_AJ_G0009624.1 mouse_genomes_project 2 65765368 65765610 + Gm26321 misc_RNA misc_RNA MGP_AJ_T0101060.1 MGP_AJ_G0039026.1 mouse_genomes_project 2 117549205 117549334 - Gm25857 snoRNA snoRNA MGP_AJ_T0101096.1 MGP_AJ_G0039062.1 mouse_genomes_project 2 165667453 165667546 + Gm25878 snoRNA snoRNA MGP_AJ_T0013574.1 MGP_AJ_G0011669.1 mouse_genomes_project 2 62160274 62161044 - processed_pseudogene processed_pseudogene MGP_AJ_T0055628.1 MGP_AJ_G0025870.1 mouse_genomes_project 2 81247264 81317021 + MGP_AJ_P0055628 Fam171b protein_coding protein_coding MGP_AJ_T0055629.1 MGP_AJ_G0025870.1 mouse_genomes_project 2 81291614 81293992 + Fam171b protein_coding processed_transcript MGP_AJ_T0007235.1 MGP_AJ_G0005929.1 mouse_genomes_project 2 71282913 71291626 + Gm10822 lincRNA lincRNA MGP_AJ_T0057499.1 MGP_AJ_G0026415.1 mouse_genomes_project 2 125169566 125192080 - MGP_AJ_P0057499 1810024B03Rik protein_coding protein_coding MGP_AJ_T0057500.1 MGP_AJ_G0026415.1 mouse_genomes_project 2 125186449 125192054 - 1810024B03Rik protein_coding processed_transcript MGP_AJ_T0052656.1 MGP_AJ_G0025334.1 mouse_genomes_project 2 10661408 10662315 + MGP_AJ_P0052656 Vim protein_coding protein_coding MGP_AJ_T0052657.1 MGP_AJ_G0025334.1 mouse_genomes_project 2 10661433 10670278 + MGP_AJ_P0052657 Vim protein_coding protein_coding MGP_AJ_T0052658.1 MGP_AJ_G0025334.1 mouse_genomes_project 2 10661762 10670277 + MGP_AJ_P0052658 Vim protein_coding protein_coding MGP_AJ_T0052659.1 MGP_AJ_G0025334.1 mouse_genomes_project 2 10661803 10666086 + Vim protein_coding retained_intron MGP_AJ_T0052660.1 MGP_AJ_G0025334.1 mouse_genomes_project 2 10662004 10664930 + Vim protein_coding retained_intron MGP_AJ_T0052661.1 MGP_AJ_G0025334.1 mouse_genomes_project 2 10666831 10669930 + Vim protein_coding retained_intron MGP_AJ_T0055816.1 MGP_AJ_G0025963.1 mouse_genomes_project 2 84470418 84471357 - MGP_AJ_P0055816 Olfr1105 protein_coding protein_coding MGP_AJ_T0058521.1 MGP_AJ_G0026684.1 mouse_genomes_project 2 152951859 152953360 + MGP_AJ_P0058521 Actl10 protein_coding protein_coding MGP_AJ_T0053057.1 MGP_AJ_G0025405.1 mouse_genomes_project 2 22212809 22216178 - MGP_AJ_P0053057 Rnf224 protein_coding protein_coding MGP_AJ_T0053058.1 MGP_AJ_G0025405.1 mouse_genomes_project 2 22213316 22215023 - MGP_AJ_P0053058 Rnf224 protein_coding protein_coding MGP_AJ_T0055870.1 MGP_AJ_G0026007.1 mouse_genomes_project 2 85566826 85567768 - MGP_AJ_P0055870 Olfr73 protein_coding protein_coding MGP_AJ_T0054251.1 MGP_AJ_G0025604.1 mouse_genomes_project 2 30082760 30119347 - MGP_AJ_P0054251 Lrsam1 protein_coding protein_coding MGP_AJ_T0054252.1 MGP_AJ_G0025604.1 mouse_genomes_project 2 30082764 30119706 - MGP_AJ_P0054252 Lrsam1 protein_coding protein_coding MGP_AJ_T0054253.1 MGP_AJ_G0025604.1 mouse_genomes_project 2 30087135 30099373 - MGP_AJ_P0054253 Lrsam1 protein_coding nonsense_mediated_decay MGP_AJ_T0054254.1 MGP_AJ_G0025604.1 mouse_genomes_project 2 30093388 30096343 - Lrsam1 protein_coding retained_intron MGP_AJ_T0054255.1 MGP_AJ_G0025604.1 mouse_genomes_project 2 30112312 30119691 - MGP_AJ_P0054255 Lrsam1 protein_coding protein_coding MGP_AJ_T0054256.1 MGP_AJ_G0025604.1 mouse_genomes_project 2 30112314 30119684 - MGP_AJ_P0054256 Lrsam1 protein_coding protein_coding MGP_AJ_T0054257.1 MGP_AJ_G0025604.1 mouse_genomes_project 2 30112327 30117998 - MGP_AJ_P0054257 Lrsam1 protein_coding protein_coding MGP_AJ_T0054258.1 MGP_AJ_G0025604.1 mouse_genomes_project 2 30112331 30119343 - MGP_AJ_P0054258 Lrsam1 protein_coding nonsense_mediated_decay MGP_AJ_T0054259.1 MGP_AJ_G0025604.1 mouse_genomes_project 2 30115340 30119685 - MGP_AJ_P0054259 Lrsam1 protein_coding protein_coding MGP_AJ_T0054260.1 MGP_AJ_G0025604.1 mouse_genomes_project 2 30115347 30119685 - MGP_AJ_P0054260 Lrsam1 protein_coding protein_coding MGP_AJ_T0054261.1 MGP_AJ_G0025604.1 mouse_genomes_project 2 30118338 30119692 - Lrsam1 protein_coding processed_transcript MGP_AJ_T0054262.1 MGP_AJ_G0025604.1 mouse_genomes_project 2 30119165 30119698 - Lrsam1 protein_coding processed_transcript MGP_AJ_T0059615.1 MGP_AJ_G0026929.1 mouse_genomes_project 2 172809519 172826219 + MGP_AJ_P0059615 Stx16 protein_coding protein_coding MGP_AJ_T0059616.1 MGP_AJ_G0026929.1 mouse_genomes_project 2 172809529 172824520 + MGP_AJ_P0059616 Stx16 protein_coding protein_coding MGP_AJ_T0059617.1 MGP_AJ_G0026929.1 mouse_genomes_project 2 172809533 172827312 + MGP_AJ_P0059617 Stx16 protein_coding protein_coding MGP_AJ_T0059618.1 MGP_AJ_G0026929.1 mouse_genomes_project 2 172810133 172833550 + MGP_AJ_P0059618 Stx16 protein_coding protein_coding MGP_AJ_T0059619.1 MGP_AJ_G0026929.1 mouse_genomes_project 2 172810269 172833549 + MGP_AJ_P0059619 Stx16 protein_coding protein_coding MGP_AJ_T0059620.1 MGP_AJ_G0026929.1 mouse_genomes_project 2 172810277 172830751 + MGP_AJ_P0059620 Stx16 protein_coding protein_coding MGP_AJ_T0059513.1 MGP_AJ_G0026896.1 mouse_genomes_project 2 167389626 167412730 - MGP_AJ_P0059513 Sall4 protein_coding protein_coding MGP_AJ_T0059514.1 MGP_AJ_G0026896.1 mouse_genomes_project 2 167389626 167412730 - MGP_AJ_P0059514 Sall4 protein_coding protein_coding MGP_AJ_T0059515.1 MGP_AJ_G0026896.1 mouse_genomes_project 2 167389626 167412558 - MGP_AJ_P0059515 Sall4 protein_coding protein_coding MGP_AJ_T0059516.1 MGP_AJ_G0026896.1 mouse_genomes_project 2 167396203 167397232 - MGP_AJ_P0059516 Sall4 protein_coding protein_coding MGP_AJ_T0059517.1 MGP_AJ_G0026896.1 mouse_genomes_project 2 167397469 167410775 - MGP_AJ_P0059517 Sall4 protein_coding protein_coding MGP_AJ_T0059518.1 MGP_AJ_G0026896.1 mouse_genomes_project 2 167397902 167413472 - Sall4 protein_coding processed_transcript MGP_AJ_T0059519.1 MGP_AJ_G0026896.1 mouse_genomes_project 2 167398041 167412646 - Sall4 protein_coding processed_transcript MGP_AJ_T0013666.1 MGP_AJ_G0011761.1 mouse_genomes_project 2 90194242 90194654 + processed_pseudogene processed_pseudogene MGP_AJ_T0004178.1 MGP_AJ_G0003689.1 mouse_genomes_project 2 171018982 171032706 + Gm14273 antisense antisense MGP_AJ_T0053658.1 MGP_AJ_G0025518.1 mouse_genomes_project 2 26829596 26833853 + Gm13547 protein_coding processed_transcript MGP_AJ_T0053660.1 MGP_AJ_G0025518.1 mouse_genomes_project 2 26831941 26834986 + MGP_AJ_P0053660 Gm13547 protein_coding protein_coding MGP_AJ_T0053661.1 MGP_AJ_G0025518.1 mouse_genomes_project 2 26831974 26834381 + MGP_AJ_P0053661 Gm13547 protein_coding protein_coding MGP_AJ_T0057160.1 MGP_AJ_G0026344.1 mouse_genomes_project 2 118969338 118979674 - MGP_AJ_P0057160 Zscan29 protein_coding protein_coding MGP_AJ_T0057161.1 MGP_AJ_G0026344.1 mouse_genomes_project 2 118969338 118979656 - MGP_AJ_P0057161 Zscan29 protein_coding protein_coding MGP_AJ_T0057162.1 MGP_AJ_G0026344.1 mouse_genomes_project 2 118970124 118973063 - Zscan29 protein_coding retained_intron MGP_AJ_T0059612.1 MGP_AJ_G0026927.1 mouse_genomes_project 2 172445725 172448532 + MGP_AJ_P0059612 1700010B08Rik protein_coding protein_coding MGP_AJ_T0055092.1 MGP_AJ_G0025761.1 mouse_genomes_project 2 63748873 63902770 - MGP_AJ_P0055092 Scn9a protein_coding protein_coding MGP_AJ_T0055093.1 MGP_AJ_G0025761.1 mouse_genomes_project 2 63748873 63902770 - MGP_AJ_P0055093 Scn9a protein_coding protein_coding MGP_AJ_T0055094.1 MGP_AJ_G0025761.1 mouse_genomes_project 2 63749899 63902770 - MGP_AJ_P0055094 Scn9a protein_coding protein_coding MGP_AJ_T0055095.1 MGP_AJ_G0025761.1 mouse_genomes_project 2 63753663 63903069 - MGP_AJ_P0055095 Scn9a protein_coding protein_coding MGP_AJ_T0055096.1 MGP_AJ_G0025761.1 mouse_genomes_project 2 63753663 63903069 - MGP_AJ_P0055096 Scn9a protein_coding protein_coding MGP_AJ_T0055097.1 MGP_AJ_G0025761.1 mouse_genomes_project 2 63806758 63809919 - Scn9a protein_coding retained_intron MGP_AJ_T0055098.1 MGP_AJ_G0025761.1 mouse_genomes_project 2 63832331 63903079 - Scn9a protein_coding retained_intron MGP_AJ_T0058107.1 MGP_AJ_G0026559.1 mouse_genomes_project 2 144002943 144016049 + MGP_AJ_P0058107 Naa20 protein_coding protein_coding MGP_AJ_T0058108.1 MGP_AJ_G0026559.1 mouse_genomes_project 2 144002955 144015266 + MGP_AJ_P0058108 Naa20 protein_coding nonsense_mediated_decay MGP_AJ_T0058109.1 MGP_AJ_G0026559.1 mouse_genomes_project 2 144002959 144015272 + MGP_AJ_P0058109 Naa20 protein_coding protein_coding MGP_AJ_T0058110.1 MGP_AJ_G0026559.1 mouse_genomes_project 2 144002964 144015346 + MGP_AJ_P0058110 Naa20 protein_coding nonsense_mediated_decay MGP_AJ_T0058111.1 MGP_AJ_G0026559.1 mouse_genomes_project 2 144002996 144010104 + MGP_AJ_P0058111 Naa20 protein_coding protein_coding MGP_AJ_T0058112.1 MGP_AJ_G0026559.1 mouse_genomes_project 2 144002999 144011709 + Naa20 protein_coding retained_intron MGP_AJ_T0058113.1 MGP_AJ_G0026559.1 mouse_genomes_project 2 144003012 144015604 + MGP_AJ_P0058113 Naa20 protein_coding protein_coding MGP_AJ_T0058114.1 MGP_AJ_G0026559.1 mouse_genomes_project 2 144011599 144015449 + Naa20 protein_coding retained_intron MGP_AJ_T0057163.1 MGP_AJ_G0026345.1 mouse_genomes_project 2 118979202 118993058 + Tubgcp4 protein_coding processed_transcript MGP_AJ_T0057164.1 MGP_AJ_G0026345.1 mouse_genomes_project 2 118979716 119007647 + MGP_AJ_P0057164 Tubgcp4 protein_coding protein_coding MGP_AJ_T0057165.1 MGP_AJ_G0026345.1 mouse_genomes_project 2 118979757 119007646 + MGP_AJ_P0057165 Tubgcp4 protein_coding protein_coding MGP_AJ_T0057166.1 MGP_AJ_G0026345.1 mouse_genomes_project 2 118979763 119007647 + MGP_AJ_P0057166 Tubgcp4 protein_coding protein_coding MGP_AJ_T0057167.1 MGP_AJ_G0026345.1 mouse_genomes_project 2 118979788 119007646 + Tubgcp4 protein_coding retained_intron MGP_AJ_T0057168.1 MGP_AJ_G0026345.1 mouse_genomes_project 2 118979794 118984557 + Tubgcp4 protein_coding processed_transcript MGP_AJ_T0057169.1 MGP_AJ_G0026345.1 mouse_genomes_project 2 118979816 119003093 + MGP_AJ_P0057169 Tubgcp4 protein_coding protein_coding MGP_AJ_T0057170.1 MGP_AJ_G0026345.1 mouse_genomes_project 2 118979841 118993101 + Tubgcp4 protein_coding processed_transcript MGP_AJ_T0057171.1 MGP_AJ_G0026345.1 mouse_genomes_project 2 118980130 118995342 + Tubgcp4 protein_coding retained_intron MGP_AJ_T0057172.1 MGP_AJ_G0026345.1 mouse_genomes_project 2 118982301 118993104 + Tubgcp4 protein_coding processed_transcript MGP_AJ_T0057173.1 MGP_AJ_G0026345.1 mouse_genomes_project 2 118992240 118993431 + Tubgcp4 protein_coding retained_intron MGP_AJ_T0057174.1 MGP_AJ_G0026345.1 mouse_genomes_project 2 118995976 119005926 + Tubgcp4 protein_coding retained_intron MGP_AJ_T0057175.1 MGP_AJ_G0026345.1 mouse_genomes_project 2 118996722 119001032 + Tubgcp4 protein_coding retained_intron MGP_AJ_T0057176.1 MGP_AJ_G0026345.1 mouse_genomes_project 2 119000565 119005108 + Tubgcp4 protein_coding retained_intron MGP_AJ_T0054767.1 MGP_AJ_G0025706.1 mouse_genomes_project 2 49277828 49303172 - MGP_AJ_P0054767 Nmi protein_coding protein_coding MGP_AJ_T0054768.1 MGP_AJ_G0025706.1 mouse_genomes_project 2 49277842 49302954 - MGP_AJ_P0054768 Nmi protein_coding protein_coding MGP_AJ_T0054769.1 MGP_AJ_G0025706.1 mouse_genomes_project 2 49277846 49302966 - MGP_AJ_P0054769 Nmi protein_coding protein_coding MGP_AJ_T0054770.1 MGP_AJ_G0025706.1 mouse_genomes_project 2 49277866 49281950 - MGP_AJ_P0054770 Nmi protein_coding protein_coding MGP_AJ_T0054771.1 MGP_AJ_G0025706.1 mouse_genomes_project 2 49285528 49303429 - MGP_AJ_P0054771 Nmi protein_coding protein_coding MGP_AJ_T0054772.1 MGP_AJ_G0025706.1 mouse_genomes_project 2 49289808 49302922 - Nmi protein_coding retained_intron MGP_AJ_T0001085.1 MGP_AJ_G0001014.1 mouse_genomes_project 2 66231506 66233006 + TEC TEC MGP_AJ_T0055876.1 MGP_AJ_G0026012.1 mouse_genomes_project 2 85714704 85715643 + MGP_AJ_P0055876 Olfr1168 protein_coding protein_coding MGP_AJ_T0057717.1 MGP_AJ_G0026474.1 mouse_genomes_project 2 128629410 128670538 - MGP_AJ_P0057717 Ubox5 protein_coding protein_coding MGP_AJ_T0057718.1 MGP_AJ_G0026474.1 mouse_genomes_project 2 128639688 128670527 - MGP_AJ_P0057718 Ubox5 protein_coding nonsense_mediated_decay MGP_AJ_T0059112.1 MGP_AJ_G0026798.1 mouse_genomes_project 2 162385453 162443856 - MGP_AJ_P0059112 Rims4 protein_coding protein_coding MGP_AJ_T0056679.1 MGP_AJ_G0026227.1 mouse_genomes_project 2 109294873 109295812 - MGP_AJ_P0056679 protein_coding protein_coding MGP_AJ_T0053065.1 MGP_AJ_G0025408.1 mouse_genomes_project 2 22224210 22234772 - MGP_AJ_P0053065 Ndor1 protein_coding protein_coding MGP_AJ_T0053066.1 MGP_AJ_G0025408.1 mouse_genomes_project 2 22224251 22234775 - MGP_AJ_P0053066 Ndor1 protein_coding nonsense_mediated_decay MGP_AJ_T0053067.1 MGP_AJ_G0025408.1 mouse_genomes_project 2 22224958 22227375 - Ndor1 protein_coding processed_transcript MGP_AJ_T0053068.1 MGP_AJ_G0025408.1 mouse_genomes_project 2 22226617 22234798 - MGP_AJ_P0053068 Ndor1 protein_coding protein_coding MGP_AJ_T0053069.1 MGP_AJ_G0025408.1 mouse_genomes_project 2 22226816 22234775 - MGP_AJ_P0053069 Ndor1 protein_coding nonsense_mediated_decay MGP_AJ_T0053070.1 MGP_AJ_G0025408.1 mouse_genomes_project 2 22226975 22227860 - Ndor1 protein_coding retained_intron MGP_AJ_T0053071.1 MGP_AJ_G0025408.1 mouse_genomes_project 2 22228860 22234735 - MGP_AJ_P0053071 Ndor1 protein_coding protein_coding MGP_AJ_T0053072.1 MGP_AJ_G0025408.1 mouse_genomes_project 2 22228888 22229731 - Ndor1 protein_coding retained_intron MGP_AJ_T0053073.1 MGP_AJ_G0025408.1 mouse_genomes_project 2 22229512 22234805 - MGP_AJ_P0053073 Ndor1 protein_coding protein_coding MGP_AJ_T0053074.1 MGP_AJ_G0025408.1 mouse_genomes_project 2 22229563 22234757 - Ndor1 protein_coding processed_transcript MGP_AJ_T0053075.1 MGP_AJ_G0025408.1 mouse_genomes_project 2 22230876 22234650 - Ndor1 protein_coding retained_intron MGP_AJ_T0053076.1 MGP_AJ_G0025408.1 mouse_genomes_project 2 22231136 22235411 - MGP_AJ_P0053076 Ndor1 protein_coding nonsense_mediated_decay MGP_AJ_T0055777.1 MGP_AJ_G0025926.1 mouse_genomes_project 2 83539713 83540655 - MGP_AJ_P0055777 Olfr1042 protein_coding protein_coding MGP_AJ_T0010328.1 MGP_AJ_G0008450.1 mouse_genomes_project 2 29186 29293 + Gm27306 miRNA miRNA MGP_AJ_T0003889.1 MGP_AJ_G0003476.1 mouse_genomes_project 2 1560570 1561834 - Gm13179 antisense antisense MGP_AJ_T0003890.1 MGP_AJ_G0003476.1 mouse_genomes_project 2 1560874 1561834 - Gm13179 antisense antisense MGP_AJ_T0055943.1 MGP_AJ_G0026066.1 mouse_genomes_project 2 87253420 87254537 - MGP_AJ_P0055943 Olfr1249 protein_coding protein_coding MGP_AJ_T0013741.1 MGP_AJ_G0011836.1 mouse_genomes_project 2 119554162 119555122 - processed_pseudogene processed_pseudogene MGP_AJ_T0059502.1 MGP_AJ_G0026895.1 mouse_genomes_project 2 167270889 167383280 - MGP_AJ_P0059502 Atp9a protein_coding protein_coding MGP_AJ_T0059503.1 MGP_AJ_G0026895.1 mouse_genomes_project 2 167270889 167383423 - MGP_AJ_P0059503 Atp9a protein_coding protein_coding MGP_AJ_T0059504.1 MGP_AJ_G0026895.1 mouse_genomes_project 2 167270889 167375703 - MGP_AJ_P0059504 Atp9a protein_coding protein_coding MGP_AJ_T0059505.1 MGP_AJ_G0026895.1 mouse_genomes_project 2 167270889 167383560 - MGP_AJ_P0059505 Atp9a protein_coding protein_coding MGP_AJ_T0059506.1 MGP_AJ_G0026895.1 mouse_genomes_project 2 167270914 167383423 - MGP_AJ_P0059506 Atp9a protein_coding protein_coding MGP_AJ_T0059507.1 MGP_AJ_G0026895.1 mouse_genomes_project 2 167298093 167308062 - Atp9a protein_coding processed_transcript MGP_AJ_T0059508.1 MGP_AJ_G0026895.1 mouse_genomes_project 2 167304763 167383280 - Atp9a protein_coding retained_intron MGP_AJ_T0059509.1 MGP_AJ_G0026895.1 mouse_genomes_project 2 167331537 167383802 - MGP_AJ_P0059509 Atp9a protein_coding protein_coding MGP_AJ_T0059510.1 MGP_AJ_G0026895.1 mouse_genomes_project 2 167331545 167383836 - MGP_AJ_P0059510 Atp9a protein_coding protein_coding MGP_AJ_T0059511.1 MGP_AJ_G0026895.1 mouse_genomes_project 2 167346599 167355157 - MGP_AJ_P0059511 Atp9a protein_coding protein_coding MGP_AJ_T0059512.1 MGP_AJ_G0026895.1 mouse_genomes_project 2 167346666 167355206 - MGP_AJ_P0059512 Atp9a protein_coding protein_coding MGP_AJ_T0013648.1 MGP_AJ_G0011743.1 mouse_genomes_project 2 84825718 84825914 + processed_pseudogene processed_pseudogene MGP_AJ_T0007169.1 MGP_AJ_G0005876.1 mouse_genomes_project 2 23204233 23209183 - Gm13553 lincRNA lincRNA MGP_AJ_T0056437.1 MGP_AJ_G0026163.1 mouse_genomes_project 2 100891072 100931450 - MGP_AJ_P0056437 Ehf protein_coding protein_coding MGP_AJ_T0056438.1 MGP_AJ_G0026163.1 mouse_genomes_project 2 100891664 100931338 - MGP_AJ_P0056438 Ehf protein_coding protein_coding MGP_AJ_T0056439.1 MGP_AJ_G0026163.1 mouse_genomes_project 2 100894220 100911781 - MGP_AJ_P0056439 Ehf protein_coding protein_coding MGP_AJ_T0056440.1 MGP_AJ_G0026163.1 mouse_genomes_project 2 100894417 100902160 - Ehf protein_coding retained_intron MGP_AJ_T0056441.1 MGP_AJ_G0026163.1 mouse_genomes_project 2 100894785 100927737 - MGP_AJ_P0056441 Ehf protein_coding protein_coding MGP_AJ_T0056442.1 MGP_AJ_G0026163.1 mouse_genomes_project 2 100902011 100919003 - MGP_AJ_P0056442 Ehf protein_coding protein_coding MGP_AJ_T0056443.1 MGP_AJ_G0026163.1 mouse_genomes_project 2 100904704 100931092 - MGP_AJ_P0056443 Ehf protein_coding protein_coding MGP_AJ_T0056444.1 MGP_AJ_G0026163.1 mouse_genomes_project 2 100907025 100931339 - Ehf protein_coding retained_intron MGP_AJ_T0004079.1 MGP_AJ_G0003615.1 mouse_genomes_project 2 127164382 127186556 - AI847159 antisense antisense MGP_AJ_T0004080.1 MGP_AJ_G0003615.1 mouse_genomes_project 2 127184071 127186556 - AI847159 antisense antisense MGP_AJ_T0004081.1 MGP_AJ_G0003615.1 mouse_genomes_project 2 127184075 127184465 - AI847159 antisense antisense MGP_AJ_T0004082.1 MGP_AJ_G0003615.1 mouse_genomes_project 2 127184119 127186591 - AI847159 antisense antisense MGP_AJ_T0052536.1 MGP_AJ_G0025320.1 mouse_genomes_project 2 8501064 8586146 - MGP_AJ_P0052536 Pfkfb3 protein_coding protein_coding MGP_AJ_T0052537.1 MGP_AJ_G0025320.1 mouse_genomes_project 2 8501422 8531768 - MGP_AJ_P0052537 Pfkfb3 protein_coding protein_coding MGP_AJ_T0052538.1 MGP_AJ_G0025320.1 mouse_genomes_project 2 8501455 8531768 - MGP_AJ_P0052538 Pfkfb3 protein_coding protein_coding MGP_AJ_T0052539.1 MGP_AJ_G0025320.1 mouse_genomes_project 2 8501457 8531768 - MGP_AJ_P0052539 Pfkfb3 protein_coding protein_coding MGP_AJ_T0052540.1 MGP_AJ_G0025320.1 mouse_genomes_project 2 8501457 8585991 - MGP_AJ_P0052540 Pfkfb3 protein_coding nonsense_mediated_decay MGP_AJ_T0052541.1 MGP_AJ_G0025320.1 mouse_genomes_project 2 8501459 8528046 - Pfkfb3 protein_coding processed_transcript MGP_AJ_T0052542.1 MGP_AJ_G0025320.1 mouse_genomes_project 2 8504038 8531768 - MGP_AJ_P0052542 Pfkfb3 protein_coding protein_coding MGP_AJ_T0052543.1 MGP_AJ_G0025320.1 mouse_genomes_project 2 8504038 8531768 - MGP_AJ_P0052543 Pfkfb3 protein_coding protein_coding MGP_AJ_T0052544.1 MGP_AJ_G0025320.1 mouse_genomes_project 2 8504038 8531367 - MGP_AJ_P0052544 Pfkfb3 protein_coding protein_coding MGP_AJ_T0052545.1 MGP_AJ_G0025320.1 mouse_genomes_project 2 8504038 8531768 - MGP_AJ_P0052545 Pfkfb3 protein_coding protein_coding MGP_AJ_T0052546.1 MGP_AJ_G0025320.1 mouse_genomes_project 2 8505395 8531757 - MGP_AJ_P0052546 Pfkfb3 protein_coding protein_coding MGP_AJ_T0052547.1 MGP_AJ_G0025320.1 mouse_genomes_project 2 8505395 8531757 - MGP_AJ_P0052547 Pfkfb3 protein_coding protein_coding MGP_AJ_T0052548.1 MGP_AJ_G0025320.1 mouse_genomes_project 2 8507586 8531768 - MGP_AJ_P0052548 Pfkfb3 protein_coding protein_coding MGP_AJ_T0052549.1 MGP_AJ_G0025320.1 mouse_genomes_project 2 8507598 8531768 - MGP_AJ_P0052549 Pfkfb3 protein_coding protein_coding MGP_AJ_T0052550.1 MGP_AJ_G0025320.1 mouse_genomes_project 2 8509549 8531742 - Pfkfb3 protein_coding retained_intron MGP_AJ_T0052551.1 MGP_AJ_G0025320.1 mouse_genomes_project 2 8510659 8511761 - Pfkfb3 protein_coding retained_intron MGP_AJ_T0052552.1 MGP_AJ_G0025320.1 mouse_genomes_project 2 8519996 8531684 - Pfkfb3 protein_coding processed_transcript MGP_AJ_T0052553.1 MGP_AJ_G0025320.1 mouse_genomes_project 2 8521965 8531464 - Pfkfb3 protein_coding retained_intron MGP_AJ_T0052554.1 MGP_AJ_G0025320.1 mouse_genomes_project 2 8522265 8528012 - Pfkfb3 protein_coding processed_transcript MGP_AJ_T0052555.1 MGP_AJ_G0025320.1 mouse_genomes_project 2 8522292 8530963 - Pfkfb3 protein_coding retained_intron MGP_AJ_T0052556.1 MGP_AJ_G0025320.1 mouse_genomes_project 2 8523561 8530530 - Pfkfb3 protein_coding processed_transcript MGP_AJ_T0013876.1 MGP_AJ_G0011971.1 mouse_genomes_project 2 167053852 167054697 - processed_pseudogene processed_pseudogene MGP_AJ_T0017752.1 MGP_AJ_G0015384.1 mouse_genomes_project 2 27391435 27409366 - Gm14471 processed_transcript processed_transcript MGP_AJ_T0013703.1 MGP_AJ_G0011798.1 mouse_genomes_project 2 103950379 103950649 + processed_pseudogene processed_pseudogene MGP_AJ_T0055566.1 MGP_AJ_G0025856.1 mouse_genomes_project 2 77091354 77128919 + MGP_AJ_P0055566 Ssfa2 protein_coding protein_coding MGP_AJ_T0055567.1 MGP_AJ_G0025856.1 mouse_genomes_project 2 77091428 77128919 + MGP_AJ_P0055567 Ssfa2 protein_coding protein_coding MGP_AJ_T0055568.1 MGP_AJ_G0025856.1 mouse_genomes_project 2 77091457 77128919 + MGP_AJ_P0055568 Ssfa2 protein_coding protein_coding MGP_AJ_T0055569.1 MGP_AJ_G0025856.1 mouse_genomes_project 2 77091463 77092448 + Ssfa2 protein_coding processed_transcript MGP_AJ_T0055570.1 MGP_AJ_G0025856.1 mouse_genomes_project 2 77095195 77128919 + Ssfa2 protein_coding processed_transcript MGP_AJ_T0057976.1 MGP_AJ_G0026526.1 mouse_genomes_project 2 135159557 135195393 - MGP_AJ_P0057976 Jag1 protein_coding protein_coding MGP_AJ_T0057977.1 MGP_AJ_G0026526.1 mouse_genomes_project 2 135160864 135163921 - Jag1 protein_coding retained_intron MGP_AJ_T0057409.1 MGP_AJ_G0026397.1 mouse_genomes_project 2 123783971 123813750 - MGP_AJ_P0057409 Cops2 protein_coding protein_coding MGP_AJ_T0057410.1 MGP_AJ_G0026397.1 mouse_genomes_project 2 123785266 123813650 - MGP_AJ_P0057410 Cops2 protein_coding protein_coding MGP_AJ_T0057411.1 MGP_AJ_G0026397.1 mouse_genomes_project 2 123785269 123813750 - MGP_AJ_P0057411 Cops2 protein_coding protein_coding MGP_AJ_T0057412.1 MGP_AJ_G0026397.1 mouse_genomes_project 2 123795995 123813607 - Cops2 protein_coding processed_transcript MGP_AJ_T0057413.1 MGP_AJ_G0026397.1 mouse_genomes_project 2 123804364 123813674 - Cops2 protein_coding processed_transcript MGP_AJ_T0101056.1 MGP_AJ_G0039022.1 mouse_genomes_project 2 105530159 105530291 - Gm23439 snoRNA snoRNA MGP_AJ_T0056655.1 MGP_AJ_G0026208.1 mouse_genomes_project 2 108292822 108596763 - MGP_AJ_P0056655 Ano3 protein_coding protein_coding MGP_AJ_T0056656.1 MGP_AJ_G0026208.1 mouse_genomes_project 2 108326344 108596213 - Ano3 protein_coding retained_intron MGP_AJ_T0056657.1 MGP_AJ_G0026208.1 mouse_genomes_project 2 108351251 108400527 - MGP_AJ_P0056657 Ano3 protein_coding protein_coding MGP_AJ_T0057716.1 MGP_AJ_G0026473.1 mouse_genomes_project 2 128620031 128621966 - MGP_AJ_P0057716 Avp protein_coding protein_coding MGP_AJ_T0007199.1 MGP_AJ_G0005898.1 mouse_genomes_project 2 43030448 43050439 + Gm13465 lincRNA lincRNA MGP_AJ_T0007387.1 MGP_AJ_G0006053.1 mouse_genomes_project 2 161390309 161391397 - Gm14255 lincRNA lincRNA MGP_AJ_T0101035.1 MGP_AJ_G0039001.1 mouse_genomes_project 2 51052616 51052725 - Gm23315 snoRNA snoRNA MGP_AJ_T0098950.1 MGP_AJ_G0036928.1 mouse_genomes_project 2 127498689 127519670 - Gm14040 sense_intronic sense_intronic MGP_AJ_T0007393.1 MGP_AJ_G0006059.1 mouse_genomes_project 2 164548776 164560556 - Gm11464 lincRNA lincRNA MGP_AJ_T0007234.1 MGP_AJ_G0005928.1 mouse_genomes_project 2 70839071 70856977 + Gm13708 lincRNA lincRNA MGP_AJ_T0054539.1 MGP_AJ_G0025672.1 mouse_genomes_project 2 34646970 34658488 - MGP_AJ_P0054539 Zbtb26 protein_coding protein_coding MGP_AJ_T0054540.1 MGP_AJ_G0025672.1 mouse_genomes_project 2 34649820 34658487 - MGP_AJ_P0054540 Zbtb26 protein_coding protein_coding MGP_AJ_T0054541.1 MGP_AJ_G0025672.1 mouse_genomes_project 2 34653282 34658502 - Zbtb26 protein_coding processed_transcript MGP_AJ_T0017733.1 MGP_AJ_G0015373.1 mouse_genomes_project 2 16485094 16486419 + 1810010K12Rik processed_transcript processed_transcript MGP_AJ_T0017734.1 MGP_AJ_G0015373.1 mouse_genomes_project 2 16485737 16488265 + 1810010K12Rik processed_transcript processed_transcript MGP_AJ_T0102481.1 MGP_AJ_G0040223.1 mouse_genomes_project 2 83832289 83833307 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0055582.1 MGP_AJ_G0025859.1 mouse_genomes_project 2 77745868 77748753 + MGP_AJ_P0055582 Prdx6b protein_coding protein_coding MGP_AJ_T0010378.1 MGP_AJ_G0008500.1 mouse_genomes_project 2 21891223 21891349 + Gm22875 miRNA miRNA MGP_AJ_T0055185.1 MGP_AJ_G0025783.1 mouse_genomes_project 2 67123385 67125766 + Klhl23 protein_coding processed_transcript MGP_AJ_T0055186.1 MGP_AJ_G0025783.1 mouse_genomes_project 2 67123811 67139192 + MGP_AJ_P0055186 Klhl23 protein_coding protein_coding MGP_AJ_T0055187.1 MGP_AJ_G0025783.1 mouse_genomes_project 2 67125796 67127687 + Klhl23 protein_coding processed_transcript MGP_AJ_T0102502.1 MGP_AJ_G0040244.1 mouse_genomes_project 2 87002874 87008973 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0055681.1 MGP_AJ_G0025879.1 mouse_genomes_project 2 82063448 82073910 + MGP_AJ_P0055681 Med19 protein_coding protein_coding MGP_AJ_T0055682.1 MGP_AJ_G0025879.1 mouse_genomes_project 2 82071327 82073194 + Med19 protein_coding processed_transcript MGP_AJ_T0056954.1 MGP_AJ_G0026313.1 mouse_genomes_project 2 117572794 117597198 - MGP_AJ_P0056954 Rpap1 protein_coding protein_coding MGP_AJ_T0056955.1 MGP_AJ_G0026313.1 mouse_genomes_project 2 117573430 117597222 - MGP_AJ_P0056955 Rpap1 protein_coding protein_coding MGP_AJ_T0056956.1 MGP_AJ_G0026313.1 mouse_genomes_project 2 117573431 117597231 - MGP_AJ_P0056956 Rpap1 protein_coding protein_coding MGP_AJ_T0056957.1 MGP_AJ_G0026313.1 mouse_genomes_project 2 117573434 117597194 - MGP_AJ_P0056957 Rpap1 protein_coding nonsense_mediated_decay MGP_AJ_T0056958.1 MGP_AJ_G0026313.1 mouse_genomes_project 2 117573437 117597214 - MGP_AJ_P0056958 Rpap1 protein_coding nonsense_mediated_decay MGP_AJ_T0056959.1 MGP_AJ_G0026313.1 mouse_genomes_project 2 117576354 117597213 - Rpap1 protein_coding retained_intron MGP_AJ_T0056960.1 MGP_AJ_G0026313.1 mouse_genomes_project 2 117588115 117597208 - Rpap1 protein_coding retained_intron MGP_AJ_T0056961.1 MGP_AJ_G0026313.1 mouse_genomes_project 2 117588329 117590483 - Rpap1 protein_coding retained_intron MGP_AJ_T0056962.1 MGP_AJ_G0026313.1 mouse_genomes_project 2 117588672 117597223 - Rpap1 protein_coding processed_transcript MGP_AJ_T0055956.1 MGP_AJ_G0026075.1 mouse_genomes_project 2 87532598 87533715 - MGP_AJ_P0055956 Olfr1259 protein_coding protein_coding MGP_AJ_T0013739.1 MGP_AJ_G0011834.1 mouse_genomes_project 2 119217606 119217839 + processed_pseudogene processed_pseudogene MGP_AJ_T0013626.1 MGP_AJ_G0011721.1 mouse_genomes_project 2 79943757 79944286 + processed_pseudogene processed_pseudogene MGP_AJ_T0054502.1 MGP_AJ_G0025648.1 mouse_genomes_project 2 33884928 33885858 + MGP_AJ_P0054502 Olfr346 protein_coding protein_coding MGP_AJ_T0010404.1 MGP_AJ_G0008526.1 mouse_genomes_project 2 30526736 30526789 - Gm25998 miRNA miRNA MGP_AJ_T0007237.1 MGP_AJ_G0005931.1 mouse_genomes_project 2 71526720 71527270 + Gm28640 lincRNA lincRNA MGP_AJ_T0053532.1 MGP_AJ_G0025493.1 mouse_genomes_project 2 24722167 24788848 + MGP_AJ_P0053532 Rxra protein_coding protein_coding MGP_AJ_T0053533.1 MGP_AJ_G0025493.1 mouse_genomes_project 2 24756246 24807133 + MGP_AJ_P0053533 Rxra protein_coding protein_coding MGP_AJ_T0053534.1 MGP_AJ_G0025493.1 mouse_genomes_project 2 24757537 24807133 + MGP_AJ_P0053534 Rxra protein_coding protein_coding MGP_AJ_T0053535.1 MGP_AJ_G0025493.1 mouse_genomes_project 2 24784248 24809907 + MGP_AJ_P0053535 Rxra protein_coding protein_coding MGP_AJ_T0053536.1 MGP_AJ_G0025493.1 mouse_genomes_project 2 24784248 24808367 + MGP_AJ_P0053536 Rxra protein_coding protein_coding MGP_AJ_T0053537.1 MGP_AJ_G0025493.1 mouse_genomes_project 2 24787150 24795621 + Rxra protein_coding processed_transcript MGP_AJ_T0058343.1 MGP_AJ_G0026634.1 mouse_genomes_project 2 150861454 150863654 + MGP_AJ_P0058343 Defb21 protein_coding protein_coding MGP_AJ_T0053113.1 MGP_AJ_G0025417.1 mouse_genomes_project 2 22335185 22339255 - Dpp7 protein_coding processed_transcript MGP_AJ_T0053114.1 MGP_AJ_G0025417.1 mouse_genomes_project 2 22335196 22339241 - Dpp7 protein_coding processed_transcript MGP_AJ_T0053115.1 MGP_AJ_G0025417.1 mouse_genomes_project 2 22335199 22335784 - Dpp7 protein_coding processed_transcript MGP_AJ_T0053116.1 MGP_AJ_G0025417.1 mouse_genomes_project 2 22335199 22339269 - MGP_AJ_P0053116 Dpp7 protein_coding protein_coding MGP_AJ_T0053117.1 MGP_AJ_G0025417.1 mouse_genomes_project 2 22336063 22338968 - Dpp7 protein_coding processed_transcript MGP_AJ_T0053118.1 MGP_AJ_G0025417.1 mouse_genomes_project 2 22336269 22339207 - Dpp7 protein_coding processed_transcript MGP_AJ_T0053119.1 MGP_AJ_G0025417.1 mouse_genomes_project 2 22337377 22339207 - Dpp7 protein_coding processed_transcript MGP_AJ_T0053120.1 MGP_AJ_G0025417.1 mouse_genomes_project 2 22337906 22339263 - Dpp7 protein_coding processed_transcript MGP_AJ_T0053121.1 MGP_AJ_G0025417.1 mouse_genomes_project 2 22338351 22339256 - Dpp7 protein_coding processed_transcript MGP_AJ_T0053122.1 MGP_AJ_G0025417.1 mouse_genomes_project 2 22338612 22339242 - Dpp7 protein_coding processed_transcript MGP_AJ_T0058156.1 MGP_AJ_G0026568.1 mouse_genomes_project 2 145480112 145486102 + MGP_AJ_P0058156 Pax1 protein_coding protein_coding MGP_AJ_T0058157.1 MGP_AJ_G0026568.1 mouse_genomes_project 2 145483217 145492669 + MGP_AJ_P0058157 Pax1 protein_coding protein_coding MGP_AJ_T0058158.1 MGP_AJ_G0026568.1 mouse_genomes_project 2 145486504 145512314 + Pax1 protein_coding retained_intron MGP_AJ_T0056613.1 MGP_AJ_G0026199.1 mouse_genomes_project 2 106735131 106923986 - MGP_AJ_P0056613 Mettl15 protein_coding protein_coding MGP_AJ_T0056614.1 MGP_AJ_G0026199.1 mouse_genomes_project 2 106735134 106923976 - Mettl15 protein_coding processed_transcript MGP_AJ_T0056615.1 MGP_AJ_G0026199.1 mouse_genomes_project 2 106769986 106926444 - MGP_AJ_P0056615 Mettl15 protein_coding protein_coding MGP_AJ_T0056616.1 MGP_AJ_G0026199.1 mouse_genomes_project 2 106884710 106926422 - Mettl15 protein_coding retained_intron MGP_AJ_T0056617.1 MGP_AJ_G0026199.1 mouse_genomes_project 2 106884775 106926398 - Mettl15 protein_coding processed_transcript MGP_AJ_T0056537.1 MGP_AJ_G0026181.1 mouse_genomes_project 2 102372303 102374579 - MGP_AJ_P0056537 Pin1rt1 protein_coding protein_coding MGP_AJ_T0098440.1 MGP_AJ_G0036424.1 mouse_genomes_project 2 91597228 91597977 - pseudogene pseudogene MGP_AJ_T0007203.1 MGP_AJ_G0005902.1 mouse_genomes_project 2 47140341 47147300 - Gm13480 lincRNA lincRNA MGP_AJ_T0007148.1 MGP_AJ_G0005861.1 mouse_genomes_project 2 8413976 8416022 + Gm13291 lincRNA lincRNA MGP_AJ_T0052891.1 MGP_AJ_G0025376.1 mouse_genomes_project 2 20112186 20177025 + MGP_AJ_P0052891 4931423N10Rik protein_coding protein_coding MGP_AJ_T0052892.1 MGP_AJ_G0025376.1 mouse_genomes_project 2 20112207 20174528 + MGP_AJ_P0052892 4931423N10Rik protein_coding protein_coding MGP_AJ_T0007258.1 MGP_AJ_G0005948.1 mouse_genomes_project 2 79816242 79833428 - A130030D18Rik lincRNA lincRNA MGP_AJ_T0058915.1 MGP_AJ_G0026753.1 mouse_genomes_project 2 156495918 156543083 - MGP_AJ_P0058915 Tti1 protein_coding protein_coding MGP_AJ_T0058916.1 MGP_AJ_G0026753.1 mouse_genomes_project 2 156495927 156523477 - MGP_AJ_P0058916 Tti1 protein_coding protein_coding MGP_AJ_T0058917.1 MGP_AJ_G0026753.1 mouse_genomes_project 2 156509394 156521327 - Tti1 protein_coding processed_transcript MGP_AJ_T0058918.1 MGP_AJ_G0026753.1 mouse_genomes_project 2 156522884 156525413 - MGP_AJ_P0058918 Tti1 protein_coding protein_coding MGP_AJ_T0007259.1 MGP_AJ_G0005949.1 mouse_genomes_project 2 80541695 80567103 - Gm28675 lincRNA lincRNA MGP_AJ_T0059256.1 MGP_AJ_G0026849.1 mouse_genomes_project 2 163430386 163450287 - MGP_AJ_P0059256 Zfp335 protein_coding nonsense_mediated_decay MGP_AJ_T0059257.1 MGP_AJ_G0026849.1 mouse_genomes_project 2 163430386 163450287 - MGP_AJ_P0059257 Zfp335 protein_coding protein_coding MGP_AJ_T0059258.1 MGP_AJ_G0026849.1 mouse_genomes_project 2 163441087 163446195 - MGP_AJ_P0059258 Zfp335 protein_coding nonsense_mediated_decay MGP_AJ_T0003884.1 MGP_AJ_G0003473.1 mouse_genomes_project 2 707894 710086 - Gm13185 antisense antisense MGP_AJ_T0057304.1 MGP_AJ_G0026367.1 mouse_genomes_project 2 119992321 120058663 - MGP_AJ_P0057304 Patl2 protein_coding protein_coding MGP_AJ_T0013697.1 MGP_AJ_G0011792.1 mouse_genomes_project 2 102217534 102218907 + processed_pseudogene processed_pseudogene MGP_AJ_T0013633.1 MGP_AJ_G0011728.1 mouse_genomes_project 2 80955209 80955350 - processed_pseudogene processed_pseudogene MGP_AJ_T0054562.1 MGP_AJ_G0025676.1 mouse_genomes_project 2 35001505 35024385 + MGP_AJ_P0054562 Crb2 protein_coding protein_coding MGP_AJ_T0054563.1 MGP_AJ_G0025676.1 mouse_genomes_project 2 35016515 35018868 + MGP_AJ_P0054563 Crb2 protein_coding nonsense_mediated_decay MGP_AJ_T0054564.1 MGP_AJ_G0025676.1 mouse_genomes_project 2 35020446 35021898 + Crb2 protein_coding processed_transcript MGP_AJ_T0054822.1 MGP_AJ_G0025716.1 mouse_genomes_project 2 51407551 51409011 - MGP_AJ_P0054822 Rprm protein_coding protein_coding MGP_AJ_T0013569.1 MGP_AJ_G0011664.1 mouse_genomes_project 2 58521189 58521480 + processed_pseudogene processed_pseudogene MGP_AJ_T0058339.1 MGP_AJ_G0026630.1 mouse_genomes_project 2 150795761 150799613 - MGP_AJ_P0058339 Defb26 protein_coding protein_coding MGP_AJ_T0055974.1 MGP_AJ_G0026085.1 mouse_genomes_project 2 87734553 87735569 - MGP_AJ_P0055974 Olfr1270 protein_coding protein_coding MGP_AJ_T0055415.1 MGP_AJ_G0025822.1 mouse_genomes_project 2 72034270 72040831 - MGP_AJ_P0055415 Evx2 protein_coding protein_coding MGP_AJ_T0055416.1 MGP_AJ_G0025822.1 mouse_genomes_project 2 72036891 72040693 - MGP_AJ_P0055416 Evx2 protein_coding protein_coding MGP_AJ_T0059190.1 MGP_AJ_G0026830.1 mouse_genomes_project 2 163184634 163191592 - MGP_AJ_P0059190 Wfdc9 protein_coding protein_coding MGP_AJ_T0059191.1 MGP_AJ_G0026830.1 mouse_genomes_project 2 163184790 163186767 - MGP_AJ_P0059191 Wfdc9 protein_coding protein_coding MGP_AJ_T0010432.1 MGP_AJ_G0008554.1 mouse_genomes_project 2 90228054 90228129 + Mir7222 miRNA miRNA MGP_AJ_T0057305.1 MGP_AJ_G0026368.1 mouse_genomes_project 2 120019045 120024436 + MGP_AJ_P0057305 B2m protein_coding protein_coding MGP_AJ_T0102477.1 MGP_AJ_G0040219.1 mouse_genomes_project 2 83196012 83196700 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0058115.1 MGP_AJ_G0026560.1 mouse_genomes_project 2 144018056 144034100 - MGP_AJ_P0058115 Crnkl1 protein_coding unknown_likely_coding MGP_AJ_T0058116.1 MGP_AJ_G0026560.1 mouse_genomes_project 2 144029782 144030781 - Crnkl1 protein_coding retained_intron MGP_AJ_T0058117.1 MGP_AJ_G0026560.1 mouse_genomes_project 2 144031361 144034106 - Crnkl1 protein_coding retained_intron MGP_AJ_T0101093.1 MGP_AJ_G0039059.1 mouse_genomes_project 2 161278314 161278440 + Gm22936 snoRNA snoRNA MGP_AJ_T0056038.1 MGP_AJ_G0026099.1 mouse_genomes_project 2 88642319 88652412 + MGP_AJ_P0056038 Rapsn protein_coding protein_coding MGP_AJ_T0056039.1 MGP_AJ_G0026099.1 mouse_genomes_project 2 88642326 88652409 + MGP_AJ_P0056039 Rapsn protein_coding protein_coding MGP_AJ_T0056040.1 MGP_AJ_G0026099.1 mouse_genomes_project 2 88642340 88652412 + MGP_AJ_P0056040 Rapsn protein_coding protein_coding MGP_AJ_T0056041.1 MGP_AJ_G0026099.1 mouse_genomes_project 2 88649471 88652163 + Rapsn protein_coding retained_intron MGP_AJ_T0099748.1 MGP_AJ_G0037714.1 mouse_genomes_project 2 21963139 21963246 - Gm25518 snRNA snRNA MGP_AJ_T0055727.1 MGP_AJ_G0025894.1 mouse_genomes_project 2 82422096 82431985 + MGP_AJ_P0055727 Ssrp1 protein_coding protein_coding MGP_AJ_T0055728.1 MGP_AJ_G0025894.1 mouse_genomes_project 2 82422313 82431982 + MGP_AJ_P0055728 Ssrp1 protein_coding protein_coding MGP_AJ_T0055729.1 MGP_AJ_G0025894.1 mouse_genomes_project 2 82422315 82424136 + Ssrp1 protein_coding processed_transcript MGP_AJ_T0055730.1 MGP_AJ_G0025894.1 mouse_genomes_project 2 82422317 82430648 + MGP_AJ_P0055730 Ssrp1 protein_coding protein_coding MGP_AJ_T0055731.1 MGP_AJ_G0025894.1 mouse_genomes_project 2 82422395 82425320 + Ssrp1 protein_coding processed_transcript MGP_AJ_T0055732.1 MGP_AJ_G0025894.1 mouse_genomes_project 2 82424976 82425887 + Ssrp1 protein_coding processed_transcript MGP_AJ_T0055733.1 MGP_AJ_G0025894.1 mouse_genomes_project 2 82426038 82427174 + Ssrp1 protein_coding processed_transcript MGP_AJ_T0055734.1 MGP_AJ_G0025894.1 mouse_genomes_project 2 82430126 82431594 + Ssrp1 protein_coding processed_transcript MGP_AJ_T0055735.1 MGP_AJ_G0025894.1 mouse_genomes_project 2 82430230 82431161 + Ssrp1 protein_coding processed_transcript MGP_AJ_T0056917.1 MGP_AJ_G0026301.1 mouse_genomes_project 2 117063953 117070707 + Vps18 protein_coding retained_intron MGP_AJ_T0056918.1 MGP_AJ_G0026301.1 mouse_genomes_project 2 117063955 117074785 + MGP_AJ_P0056918 Vps18 protein_coding protein_coding MGP_AJ_T0056919.1 MGP_AJ_G0026301.1 mouse_genomes_project 2 117064000 117074658 + Vps18 protein_coding processed_transcript MGP_AJ_T0013860.1 MGP_AJ_G0011955.1 mouse_genomes_project 2 161432548 161433178 - processed_pseudogene processed_pseudogene MGP_AJ_T0007350.1 MGP_AJ_G0006023.1 mouse_genomes_project 2 142244298 142261033 - lincRNA lincRNA MGP_AJ_T0007351.1 MGP_AJ_G0006023.1 mouse_genomes_project 2 142245459 142250756 - lincRNA lincRNA MGP_AJ_T0001051.1 MGP_AJ_G0000982.1 mouse_genomes_project 2 12047479 12048805 + TEC TEC MGP_AJ_T0055820.1 MGP_AJ_G0025967.1 mouse_genomes_project 2 84559885 84560824 - MGP_AJ_P0055820 Olfr259 protein_coding protein_coding MGP_AJ_T0001103.1 MGP_AJ_G0001031.1 mouse_genomes_project 2 155333217 155336563 - TEC TEC MGP_AJ_T0055084.1 MGP_AJ_G0025760.1 mouse_genomes_project 2 63546796 63587695 - MGP_AJ_P0055084 Scn1a protein_coding nonsense_mediated_decay MGP_AJ_T0055085.1 MGP_AJ_G0025760.1 mouse_genomes_project 2 63546799 63678914 - MGP_AJ_P0055085 Scn1a protein_coding protein_coding MGP_AJ_T0055086.1 MGP_AJ_G0025760.1 mouse_genomes_project 2 63546800 63706806 - MGP_AJ_P0055086 Scn1a protein_coding protein_coding MGP_AJ_T0055087.1 MGP_AJ_G0025760.1 mouse_genomes_project 2 63546802 63620635 - MGP_AJ_P0055087 Scn1a protein_coding protein_coding MGP_AJ_T0055088.1 MGP_AJ_G0025760.1 mouse_genomes_project 2 63548903 63620617 - MGP_AJ_P0055088 Scn1a protein_coding protein_coding MGP_AJ_T0055089.1 MGP_AJ_G0025760.1 mouse_genomes_project 2 63548910 63587888 - MGP_AJ_P0055089 Scn1a protein_coding protein_coding MGP_AJ_T0055090.1 MGP_AJ_G0025760.1 mouse_genomes_project 2 63595752 63706809 - MGP_AJ_P0055090 Scn1a protein_coding protein_coding MGP_AJ_T0055091.1 MGP_AJ_G0025760.1 mouse_genomes_project 2 63617809 63706783 - Scn1a protein_coding retained_intron MGP_AJ_T0055884.1 MGP_AJ_G0026019.1 mouse_genomes_project 2 86087792 86088704 + MGP_AJ_P0055884 Olfr1183 protein_coding protein_coding MGP_AJ_T0059432.1 MGP_AJ_G0026879.1 mouse_genomes_project 2 166027390 166083233 + MGP_AJ_P0059432 Slc9a8 protein_coding protein_coding MGP_AJ_T0059433.1 MGP_AJ_G0026879.1 mouse_genomes_project 2 166027399 166080869 + MGP_AJ_P0059433 Slc9a8 protein_coding protein_coding MGP_AJ_T0059434.1 MGP_AJ_G0026879.1 mouse_genomes_project 2 166027399 166083231 + MGP_AJ_P0059434 Slc9a8 protein_coding protein_coding MGP_AJ_T0059435.1 MGP_AJ_G0026879.1 mouse_genomes_project 2 166027401 166031813 + Slc9a8 protein_coding retained_intron MGP_AJ_T0059436.1 MGP_AJ_G0026879.1 mouse_genomes_project 2 166027408 166052644 + Slc9a8 protein_coding retained_intron MGP_AJ_T0059437.1 MGP_AJ_G0026879.1 mouse_genomes_project 2 166027410 166083232 + Slc9a8 protein_coding processed_transcript MGP_AJ_T0059438.1 MGP_AJ_G0026879.1 mouse_genomes_project 2 166027415 166041509 + Slc9a8 protein_coding retained_intron MGP_AJ_T0059439.1 MGP_AJ_G0026879.1 mouse_genomes_project 2 166027416 166074021 + Slc9a8 protein_coding processed_transcript MGP_AJ_T0059440.1 MGP_AJ_G0026879.1 mouse_genomes_project 2 166027420 166083232 + Slc9a8 protein_coding processed_transcript MGP_AJ_T0059441.1 MGP_AJ_G0026879.1 mouse_genomes_project 2 166029797 166074048 + Slc9a8 protein_coding processed_transcript MGP_AJ_T0059442.1 MGP_AJ_G0026879.1 mouse_genomes_project 2 166056659 166074046 + Slc9a8 protein_coding processed_transcript MGP_AJ_T0059443.1 MGP_AJ_G0026879.1 mouse_genomes_project 2 166056748 166075392 + Slc9a8 protein_coding processed_transcript MGP_AJ_T0059444.1 MGP_AJ_G0026879.1 mouse_genomes_project 2 166056848 166083232 + Slc9a8 protein_coding processed_transcript MGP_AJ_T0053563.1 MGP_AJ_G0025502.1 mouse_genomes_project 2 25566161 25595947 + MGP_AJ_P0053563 Ralgds protein_coding protein_coding MGP_AJ_T0053564.1 MGP_AJ_G0025502.1 mouse_genomes_project 2 25566362 25606078 + MGP_AJ_P0053564 Ralgds protein_coding protein_coding MGP_AJ_T0053565.1 MGP_AJ_G0025502.1 mouse_genomes_project 2 25586383 25606063 + MGP_AJ_P0053565 Ralgds protein_coding protein_coding MGP_AJ_T0053566.1 MGP_AJ_G0025502.1 mouse_genomes_project 2 25586570 25605633 + MGP_AJ_P0053566 Ralgds protein_coding protein_coding MGP_AJ_T0053567.1 MGP_AJ_G0025502.1 mouse_genomes_project 2 25586577 25606067 + Ralgds protein_coding retained_intron MGP_AJ_T0053568.1 MGP_AJ_G0025502.1 mouse_genomes_project 2 25593722 25595899 + Ralgds protein_coding retained_intron MGP_AJ_T0053569.1 MGP_AJ_G0025502.1 mouse_genomes_project 2 25595329 25598073 + MGP_AJ_P0053569 Ralgds protein_coding nonsense_mediated_decay MGP_AJ_T0053570.1 MGP_AJ_G0025502.1 mouse_genomes_project 2 25598289 25600217 + Ralgds protein_coding retained_intron MGP_AJ_T0053571.1 MGP_AJ_G0025502.1 mouse_genomes_project 2 25600546 25601973 + Ralgds protein_coding retained_intron MGP_AJ_T0053572.1 MGP_AJ_G0025502.1 mouse_genomes_project 2 25602054 25605322 + MGP_AJ_P0053572 Ralgds protein_coding protein_coding MGP_AJ_T0055781.1 MGP_AJ_G0025930.1 mouse_genomes_project 2 83577848 83578796 - MGP_AJ_P0055781 Olfr1045 protein_coding protein_coding MGP_AJ_T0010344.1 MGP_AJ_G0008466.1 mouse_genomes_project 2 7497267 7497364 + Mir467c miRNA miRNA MGP_AJ_T0057760.1 MGP_AJ_G0026482.1 mouse_genomes_project 2 129086696 129090153 - MGP_AJ_P0057760 Gfra4 protein_coding protein_coding MGP_AJ_T0057761.1 MGP_AJ_G0026482.1 mouse_genomes_project 2 129086703 129088522 - Gfra4 protein_coding retained_intron MGP_AJ_T0057762.1 MGP_AJ_G0026482.1 mouse_genomes_project 2 129086704 129088576 - Gfra4 protein_coding retained_intron MGP_AJ_T0057763.1 MGP_AJ_G0026482.1 mouse_genomes_project 2 129087240 129089747 - MGP_AJ_P0057763 Gfra4 protein_coding protein_coding MGP_AJ_T0057764.1 MGP_AJ_G0026482.1 mouse_genomes_project 2 129087272 129090153 - MGP_AJ_P0057764 Gfra4 protein_coding protein_coding MGP_AJ_T0057765.1 MGP_AJ_G0026482.1 mouse_genomes_project 2 129087272 129089747 - MGP_AJ_P0057765 Gfra4 protein_coding protein_coding MGP_AJ_T0057766.1 MGP_AJ_G0026482.1 mouse_genomes_project 2 129088296 129090153 - MGP_AJ_P0057766 Gfra4 protein_coding protein_coding MGP_AJ_T0057767.1 MGP_AJ_G0026482.1 mouse_genomes_project 2 129088296 129089747 - MGP_AJ_P0057767 Gfra4 protein_coding protein_coding MGP_AJ_T0013467.1 MGP_AJ_G0011562.1 mouse_genomes_project 2 21541172 21542784 - processed_pseudogene processed_pseudogene MGP_AJ_T0003956.1 MGP_AJ_G0003529.1 mouse_genomes_project 2 30812716 30814117 + C130021I20Rik antisense antisense MGP_AJ_T0003957.1 MGP_AJ_G0003529.1 mouse_genomes_project 2 30812854 30817885 + C130021I20Rik antisense antisense MGP_AJ_T0059561.1 MGP_AJ_G0026911.1 mouse_genomes_project 2 171088016 171124522 + MGP_AJ_P0059561 Cass4 protein_coding protein_coding MGP_AJ_T0059562.1 MGP_AJ_G0026911.1 mouse_genomes_project 2 171088043 171128685 + MGP_AJ_P0059562 Cass4 protein_coding protein_coding MGP_AJ_T0059563.1 MGP_AJ_G0026911.1 mouse_genomes_project 2 171088122 171127789 + MGP_AJ_P0059563 Cass4 protein_coding protein_coding MGP_AJ_T0059564.1 MGP_AJ_G0026911.1 mouse_genomes_project 2 171088192 171127572 + MGP_AJ_P0059564 Cass4 protein_coding unknown_likely_coding MGP_AJ_T0007282.1 MGP_AJ_G0005968.1 mouse_genomes_project 2 100806319 100811427 + Gm13874 lincRNA lincRNA MGP_AJ_T0007283.1 MGP_AJ_G0005968.1 mouse_genomes_project 2 100806703 100811427 + Gm13874 lincRNA lincRNA MGP_AJ_T0007284.1 MGP_AJ_G0005968.1 mouse_genomes_project 2 100810760 100815222 + Gm13874 lincRNA lincRNA MGP_AJ_T0059458.1 MGP_AJ_G0026884.1 mouse_genomes_project 2 166252087 166271038 - MGP_AJ_P0059458 protein_coding protein_coding MGP_AJ_T0059459.1 MGP_AJ_G0026884.1 mouse_genomes_project 2 166252707 166309032 - protein_coding processed_transcript MGP_AJ_T0059460.1 MGP_AJ_G0026884.1 mouse_genomes_project 2 166253215 166254659 - protein_coding retained_intron MGP_AJ_T0059461.1 MGP_AJ_G0026884.1 mouse_genomes_project 2 166263666 166271036 - protein_coding retained_intron MGP_AJ_T0058898.1 MGP_AJ_G0026750.1 mouse_genomes_project 2 156075189 156077613 + MGP_AJ_P0058898 Nnat protein_coding protein_coding MGP_AJ_T0058899.1 MGP_AJ_G0026750.1 mouse_genomes_project 2 156075218 156077347 + MGP_AJ_P0058899 Nnat protein_coding protein_coding MGP_AJ_T0058900.1 MGP_AJ_G0026750.1 mouse_genomes_project 2 156075221 156077631 + MGP_AJ_P0058900 Nnat protein_coding protein_coding MGP_AJ_T0058901.1 MGP_AJ_G0026750.1 mouse_genomes_project 2 156075227 156077613 + MGP_AJ_P0058901 Nnat protein_coding protein_coding MGP_AJ_T0058902.1 MGP_AJ_G0026750.1 mouse_genomes_project 2 156075232 156077101 + MGP_AJ_P0058902 Nnat protein_coding protein_coding MGP_AJ_T0058903.1 MGP_AJ_G0026750.1 mouse_genomes_project 2 156075234 156076481 + MGP_AJ_P0058903 Nnat protein_coding protein_coding MGP_AJ_T0058904.1 MGP_AJ_G0026750.1 mouse_genomes_project 2 156075235 156076891 + MGP_AJ_P0058904 Nnat protein_coding protein_coding MGP_AJ_T0058905.1 MGP_AJ_G0026750.1 mouse_genomes_project 2 156075241 156076889 + MGP_AJ_P0058905 Nnat protein_coding protein_coding MGP_AJ_T0058906.1 MGP_AJ_G0026750.1 mouse_genomes_project 2 156075251 156077626 + Nnat protein_coding retained_intron MGP_AJ_T0058907.1 MGP_AJ_G0026750.1 mouse_genomes_project 2 156076117 156076964 + Nnat protein_coding retained_intron MGP_AJ_T0056947.1 MGP_AJ_G0026311.1 mouse_genomes_project 2 117550713 117560273 + MGP_AJ_P0056947 Itpka protein_coding protein_coding MGP_AJ_T0057454.1 MGP_AJ_G0026406.1 mouse_genomes_project 2 124672285 124728823 + Usp8 protein_coding processed_transcript MGP_AJ_T0057455.1 MGP_AJ_G0026406.1 mouse_genomes_project 2 124672300 124728872 + MGP_AJ_P0057455 Usp8 protein_coding protein_coding MGP_AJ_T0057456.1 MGP_AJ_G0026406.1 mouse_genomes_project 2 124672317 124728865 + MGP_AJ_P0057456 Usp8 protein_coding protein_coding MGP_AJ_T0013853.1 MGP_AJ_G0011948.1 mouse_genomes_project 2 158303274 158303806 - processed_pseudogene processed_pseudogene MGP_AJ_T0056281.1 MGP_AJ_G0026134.1 mouse_genomes_project 2 90830350 90841719 + MGP_AJ_P0056281 Trp53i11 protein_coding protein_coding MGP_AJ_T0056282.1 MGP_AJ_G0026134.1 mouse_genomes_project 2 90830350 90844556 + MGP_AJ_P0056282 Trp53i11 protein_coding protein_coding MGP_AJ_T0056283.1 MGP_AJ_G0026134.1 mouse_genomes_project 2 90830363 90842249 + Trp53i11 protein_coding processed_transcript MGP_AJ_T0056284.1 MGP_AJ_G0026134.1 mouse_genomes_project 2 90830363 90843103 + Trp53i11 protein_coding processed_transcript MGP_AJ_T0056285.1 MGP_AJ_G0026134.1 mouse_genomes_project 2 90830386 90844546 + MGP_AJ_P0056285 Trp53i11 protein_coding protein_coding MGP_AJ_T0056286.1 MGP_AJ_G0026134.1 mouse_genomes_project 2 90830472 90832365 + Trp53i11 protein_coding processed_transcript MGP_AJ_T0056287.1 MGP_AJ_G0026134.1 mouse_genomes_project 2 90831993 90844554 + Trp53i11 protein_coding processed_transcript MGP_AJ_T0056288.1 MGP_AJ_G0026134.1 mouse_genomes_project 2 90841718 90843395 + Trp53i11 protein_coding processed_transcript MGP_AJ_T0017792.1 MGP_AJ_G0015413.1 mouse_genomes_project 2 85815635 85820740 - processed_transcript processed_transcript MGP_AJ_T0056857.1 MGP_AJ_G0026286.1 mouse_genomes_project 2 116632281 116652202 + MGP_AJ_P0056857 Ivd protein_coding protein_coding MGP_AJ_T0056858.1 MGP_AJ_G0026286.1 mouse_genomes_project 2 116632355 116639763 + Ivd protein_coding retained_intron MGP_AJ_T0056859.1 MGP_AJ_G0026286.1 mouse_genomes_project 2 116640743 116641648 + Ivd protein_coding processed_transcript MGP_AJ_T0056860.1 MGP_AJ_G0026286.1 mouse_genomes_project 2 116641673 116646335 + Ivd protein_coding processed_transcript MGP_AJ_T0056861.1 MGP_AJ_G0026286.1 mouse_genomes_project 2 116642147 116644143 + Ivd protein_coding retained_intron MGP_AJ_T0056862.1 MGP_AJ_G0026286.1 mouse_genomes_project 2 116643688 116649823 + Ivd protein_coding processed_transcript MGP_AJ_T0056863.1 MGP_AJ_G0026286.1 mouse_genomes_project 2 116645080 116650258 + Ivd protein_coding processed_transcript MGP_AJ_T0056864.1 MGP_AJ_G0026286.1 mouse_genomes_project 2 116645808 116647266 + Ivd protein_coding processed_transcript MGP_AJ_T0003924.1 MGP_AJ_G0003503.1 mouse_genomes_project 2 22799741 22802148 + antisense antisense MGP_AJ_T0101059.1 MGP_AJ_G0039025.1 mouse_genomes_project 2 110242701 110242830 + Gm22676 snoRNA snoRNA MGP_AJ_T0010453.1 MGP_AJ_G0008575.1 mouse_genomes_project 2 125877032 125877222 + Gm22411 miRNA miRNA MGP_AJ_T0099774.1 MGP_AJ_G0037740.1 mouse_genomes_project 2 88811069 88811175 + Gm23390 snRNA snRNA MGP_AJ_T0102122.1 MGP_AJ_G0026989.1 mouse_genomes_project 2 180236340 180239670 + unitary_pseudogene processed_transcript MGP_AJ_T0102123.1 MGP_AJ_G0026989.1 mouse_genomes_project 2 180236501 180239283 + unitary_pseudogene unitary_pseudogene MGP_AJ_T0102459.1 MGP_AJ_G0040201.1 mouse_genomes_project 2 33487769 33488675 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0013506.1 MGP_AJ_G0011601.1 mouse_genomes_project 2 36492419 36492735 - processed_pseudogene processed_pseudogene MGP_AJ_T0059609.1 MGP_AJ_G0026926.1 mouse_genomes_project 2 172383310 172430688 + MGP_AJ_P0059609 Rab22a protein_coding protein_coding MGP_AJ_T0059610.1 MGP_AJ_G0026926.1 mouse_genomes_project 2 172383310 172430660 + MGP_AJ_P0059610 Rab22a protein_coding nonsense_mediated_decay MGP_AJ_T0059611.1 MGP_AJ_G0026926.1 mouse_genomes_project 2 172383406 172424499 + MGP_AJ_P0059611 Rab22a protein_coding protein_coding MGP_AJ_T0013486.1 MGP_AJ_G0011581.1 mouse_genomes_project 2 31599755 31600115 - processed_pseudogene processed_pseudogene MGP_AJ_T0013429.1 MGP_AJ_G0011524.1 mouse_genomes_project 2 11774543 11774878 - processed_pseudogene processed_pseudogene MGP_AJ_T0055805.1 MGP_AJ_G0025953.1 mouse_genomes_project 2 84213875 84214844 + MGP_AJ_P0055805 Olfr1093 protein_coding protein_coding MGP_AJ_T0056063.1 MGP_AJ_G0026102.1 mouse_genomes_project 2 88691830 88725654 + MGP_AJ_P0056063 Spi1 protein_coding protein_coding MGP_AJ_T0056064.1 MGP_AJ_G0026102.1 mouse_genomes_project 2 88691848 88699769 + Spi1 protein_coding processed_transcript MGP_AJ_T0056065.1 MGP_AJ_G0026102.1 mouse_genomes_project 2 88705538 88727038 + MGP_AJ_P0056065 Spi1 protein_coding protein_coding MGP_AJ_T0056066.1 MGP_AJ_G0026102.1 mouse_genomes_project 2 88706222 88724603 + MGP_AJ_P0056066 Spi1 protein_coding protein_coding MGP_AJ_T0013414.1 MGP_AJ_G0011509.1 mouse_genomes_project 2 2142893 2143719 + processed_pseudogene processed_pseudogene MGP_AJ_T0003897.1 MGP_AJ_G0003482.1 mouse_genomes_project 2 6890182 6891850 + Gm13256 antisense antisense MGP_AJ_T0013782.1 MGP_AJ_G0011877.1 mouse_genomes_project 2 138208502 138208883 - processed_pseudogene processed_pseudogene MGP_AJ_T0055024.1 MGP_AJ_G0025751.1 mouse_genomes_project 2 61264951 61390955 - MGP_AJ_P0055024 Fign protein_coding protein_coding MGP_AJ_T0055025.1 MGP_AJ_G0025751.1 mouse_genomes_project 2 61270779 61390981 - MGP_AJ_P0055025 Fign protein_coding nonsense_mediated_decay MGP_AJ_T0055026.1 MGP_AJ_G0025751.1 mouse_genomes_project 2 61273888 61390931 - Fign protein_coding processed_transcript MGP_AJ_T0055027.1 MGP_AJ_G0025751.1 mouse_genomes_project 2 61274057 61390953 - Fign protein_coding processed_transcript MGP_AJ_T0055369.1 MGP_AJ_G0025817.1 mouse_genomes_project 2 70948180 70965282 - MGP_AJ_P0055369 Chrna1 protein_coding protein_coding MGP_AJ_T0013496.1 MGP_AJ_G0011591.1 mouse_genomes_project 2 34283586 34287622 - processed_pseudogene processed_pseudogene MGP_AJ_T0055907.1 MGP_AJ_G0026039.1 mouse_genomes_project 2 86641579 86642515 - MGP_AJ_P0055907 Olfr1214 protein_coding protein_coding MGP_AJ_T0059195.1 MGP_AJ_G0026833.1 mouse_genomes_project 2 163220807 163223420 + MGP_AJ_P0059195 Wfdc13 protein_coding protein_coding MGP_AJ_T0010423.1 MGP_AJ_G0008545.1 mouse_genomes_project 2 73881482 73881585 + Gm23164 miRNA miRNA MGP_AJ_T0013433.1 MGP_AJ_G0011528.1 mouse_genomes_project 2 12419697 12420493 + processed_pseudogene processed_pseudogene MGP_AJ_T0017738.1 MGP_AJ_G0015375.1 mouse_genomes_project 2 22799064 22809772 - Gm13538 processed_transcript processed_transcript MGP_AJ_T0058179.1 MGP_AJ_G0026579.1 mouse_genomes_project 2 146904468 146908548 + MGP_AJ_P0058179 Cst12 protein_coding protein_coding MGP_AJ_T0058180.1 MGP_AJ_G0026579.1 mouse_genomes_project 2 146904479 146908657 + MGP_AJ_P0058180 Cst12 protein_coding protein_coding MGP_AJ_T0055722.1 MGP_AJ_G0025893.1 mouse_genomes_project 2 82383265 82420350 - MGP_AJ_P0055722 P2rx3 protein_coding protein_coding MGP_AJ_T0055723.1 MGP_AJ_G0025893.1 mouse_genomes_project 2 82383324 82422325 - MGP_AJ_P0055723 P2rx3 protein_coding protein_coding MGP_AJ_T0055724.1 MGP_AJ_G0025893.1 mouse_genomes_project 2 82383525 82420185 - MGP_AJ_P0055724 P2rx3 protein_coding protein_coding MGP_AJ_T0055725.1 MGP_AJ_G0025893.1 mouse_genomes_project 2 82409805 82418172 - P2rx3 protein_coding processed_transcript MGP_AJ_T0055726.1 MGP_AJ_G0025893.1 mouse_genomes_project 2 82416914 82418056 - P2rx3 protein_coding processed_transcript MGP_AJ_T0007219.1 MGP_AJ_G0005916.1 mouse_genomes_project 2 59759234 59762947 - Gm13564 lincRNA lincRNA MGP_AJ_T0056678.1 MGP_AJ_G0026226.1 mouse_genomes_project 2 109245688 109246861 - MGP_AJ_P0056678 protein_coding protein_coding MGP_AJ_T0057150.1 MGP_AJ_G0026342.1 mouse_genomes_project 2 118937398 118949390 - MGP_AJ_P0057150 Lcmt2 protein_coding protein_coding MGP_AJ_T0057151.1 MGP_AJ_G0026342.1 mouse_genomes_project 2 118946608 118949665 - MGP_AJ_P0057151 Lcmt2 protein_coding protein_coding MGP_AJ_T0057995.1 MGP_AJ_G0026533.1 mouse_genomes_project 2 138272403 138305271 + MGP_AJ_P0057995 Ndufaf5 protein_coding protein_coding MGP_AJ_T0057996.1 MGP_AJ_G0026533.1 mouse_genomes_project 2 138272467 138274069 + Ndufaf5 protein_coding retained_intron MGP_AJ_T0057997.1 MGP_AJ_G0026533.1 mouse_genomes_project 2 138272784 138305214 + Ndufaf5 protein_coding processed_transcript MGP_AJ_T0054189.1 MGP_AJ_G0025593.1 mouse_genomes_project 2 29797805 29834177 + MGP_AJ_P0054189 Eng protein_coding protein_coding MGP_AJ_T0054190.1 MGP_AJ_G0025593.1 mouse_genomes_project 2 29797805 29834717 + MGP_AJ_P0054190 Eng protein_coding protein_coding MGP_AJ_T0054191.1 MGP_AJ_G0025593.1 mouse_genomes_project 2 29797832 29834728 + MGP_AJ_P0054191 Eng protein_coding protein_coding MGP_AJ_T0054192.1 MGP_AJ_G0025593.1 mouse_genomes_project 2 29798203 29801578 + Eng protein_coding processed_transcript MGP_AJ_T0054193.1 MGP_AJ_G0025593.1 mouse_genomes_project 2 29824897 29825800 + Eng protein_coding retained_intron MGP_AJ_T0054194.1 MGP_AJ_G0025593.1 mouse_genomes_project 2 29825420 29833314 + MGP_AJ_P0054194 Eng protein_coding protein_coding MGP_AJ_T0007295.1 MGP_AJ_G0005978.1 mouse_genomes_project 2 105826050 105931071 - Gm13912 lincRNA lincRNA MGP_AJ_T0101070.1 MGP_AJ_G0039036.1 mouse_genomes_project 2 128316931 128317003 + Snord57 snoRNA snoRNA MGP_AJ_T0013432.1 MGP_AJ_G0011527.1 mouse_genomes_project 2 12202304 12203388 + processed_pseudogene processed_pseudogene MGP_AJ_T0013618.1 MGP_AJ_G0011713.1 mouse_genomes_project 2 77591725 77592548 + processed_pseudogene processed_pseudogene MGP_AJ_T0013841.1 MGP_AJ_G0011936.1 mouse_genomes_project 2 154884903 154885288 - processed_pseudogene processed_pseudogene MGP_AJ_T0053308.1 MGP_AJ_G0025455.1 mouse_genomes_project 2 23217727 23225801 - MGP_AJ_P0053308 Lhx3 protein_coding protein_coding MGP_AJ_T0053309.1 MGP_AJ_G0025455.1 mouse_genomes_project 2 23217731 23220382 - Lhx3 protein_coding retained_intron MGP_AJ_T0053310.1 MGP_AJ_G0025455.1 mouse_genomes_project 2 23217731 23224087 - MGP_AJ_P0053310 Lhx3 protein_coding protein_coding MGP_AJ_T0053311.1 MGP_AJ_G0025455.1 mouse_genomes_project 2 23219991 23220957 - Lhx3 protein_coding retained_intron MGP_AJ_T0013736.1 MGP_AJ_G0011831.1 mouse_genomes_project 2 117691004 117691339 - processed_pseudogene processed_pseudogene MGP_AJ_T0010382.1 MGP_AJ_G0008504.1 mouse_genomes_project 2 23488258 23488319 - Mir6996 miRNA miRNA MGP_AJ_T0052678.1 MGP_AJ_G0025340.1 mouse_genomes_project 2 11465248 11578256 + MGP_AJ_P0052678 Slc39a12 protein_coding protein_coding MGP_AJ_T0052679.1 MGP_AJ_G0025340.1 mouse_genomes_project 2 11465431 11466459 + MGP_AJ_P0052679 Slc39a12 protein_coding protein_coding MGP_AJ_T0058071.1 MGP_AJ_G0026551.1 mouse_genomes_project 2 142615290 142629743 + MGP_AJ_P0058071 Polr3f protein_coding protein_coding MGP_AJ_T0058072.1 MGP_AJ_G0026551.1 mouse_genomes_project 2 142615314 142618268 + Polr3f protein_coding processed_transcript MGP_AJ_T0058073.1 MGP_AJ_G0026551.1 mouse_genomes_project 2 142615320 142622920 + MGP_AJ_P0058073 Polr3f protein_coding protein_coding MGP_AJ_T0058074.1 MGP_AJ_G0026551.1 mouse_genomes_project 2 142615352 142622437 + Polr3f protein_coding processed_transcript MGP_AJ_T0058075.1 MGP_AJ_G0026551.1 mouse_genomes_project 2 142619910 142626543 + Polr3f protein_coding processed_transcript MGP_AJ_T0058076.1 MGP_AJ_G0026551.1 mouse_genomes_project 2 142623687 142624373 + Polr3f protein_coding processed_transcript MGP_AJ_T0058077.1 MGP_AJ_G0026551.1 mouse_genomes_project 2 142623923 142626643 + Polr3f protein_coding processed_transcript MGP_AJ_T0055347.1 MGP_AJ_G0025812.1 mouse_genomes_project 2 70653590 70659137 + MGP_AJ_P0055347 Sp9 protein_coding protein_coding MGP_AJ_T0055952.1 MGP_AJ_G0026073.1 mouse_genomes_project 2 87478706 87482020 + MGP_AJ_P0055952 Olfr1257 protein_coding protein_coding MGP_AJ_T0055953.1 MGP_AJ_G0026073.1 mouse_genomes_project 2 87481056 87482072 + MGP_AJ_P0055953 Olfr1257 protein_coding protein_coding MGP_AJ_T0010402.1 MGP_AJ_G0008524.1 mouse_genomes_project 2 29865667 29865749 - Mir2861 miRNA miRNA MGP_AJ_T0013537.1 MGP_AJ_G0011632.1 mouse_genomes_project 2 48939211 48939446 - processed_pseudogene processed_pseudogene MGP_AJ_T0059652.1 MGP_AJ_G0026934.1 mouse_genomes_project 2 173165754 173178046 - MGP_AJ_P0059652 Ctsz protein_coding protein_coding MGP_AJ_T0059132.1 MGP_AJ_G0026806.1 mouse_genomes_project 2 162722831 162724099 - MGP_AJ_P0059132 Wfdc15a protein_coding protein_coding MGP_AJ_T0056239.1 MGP_AJ_G0026125.1 mouse_genomes_project 2 89998675 90004613 - MGP_AJ_P0056239 Gyltl1b protein_coding protein_coding MGP_AJ_T0056240.1 MGP_AJ_G0026125.1 mouse_genomes_project 2 89998675 90004684 - MGP_AJ_P0056240 Gyltl1b protein_coding protein_coding MGP_AJ_T0056241.1 MGP_AJ_G0026125.1 mouse_genomes_project 2 89998676 90004663 - Gyltl1b protein_coding retained_intron MGP_AJ_T0056242.1 MGP_AJ_G0026125.1 mouse_genomes_project 2 89998680 90004645 - MGP_AJ_P0056242 Gyltl1b protein_coding nonsense_mediated_decay MGP_AJ_T0056243.1 MGP_AJ_G0026125.1 mouse_genomes_project 2 89998681 90004638 - MGP_AJ_P0056243 Gyltl1b protein_coding nonsense_mediated_decay MGP_AJ_T0056244.1 MGP_AJ_G0026125.1 mouse_genomes_project 2 89998689 90004655 - MGP_AJ_P0056244 Gyltl1b protein_coding protein_coding MGP_AJ_T0056245.1 MGP_AJ_G0026125.1 mouse_genomes_project 2 89998689 90005594 - MGP_AJ_P0056245 Gyltl1b protein_coding protein_coding MGP_AJ_T0056246.1 MGP_AJ_G0026125.1 mouse_genomes_project 2 89998700 90004660 - MGP_AJ_P0056246 Gyltl1b protein_coding protein_coding MGP_AJ_T0056247.1 MGP_AJ_G0026125.1 mouse_genomes_project 2 89999421 90000151 - Gyltl1b protein_coding retained_intron MGP_AJ_T0056248.1 MGP_AJ_G0026125.1 mouse_genomes_project 2 89999604 90000406 - Gyltl1b protein_coding retained_intron MGP_AJ_T0056249.1 MGP_AJ_G0026125.1 mouse_genomes_project 2 90000647 90003104 - Gyltl1b protein_coding retained_intron MGP_AJ_T0056250.1 MGP_AJ_G0026125.1 mouse_genomes_project 2 90000943 90003291 - Gyltl1b protein_coding processed_transcript MGP_AJ_T0056251.1 MGP_AJ_G0026125.1 mouse_genomes_project 2 90001016 90003700 - Gyltl1b protein_coding retained_intron MGP_AJ_T0056252.1 MGP_AJ_G0026125.1 mouse_genomes_project 2 90001698 90004660 - Gyltl1b protein_coding retained_intron MGP_AJ_T0056253.1 MGP_AJ_G0026125.1 mouse_genomes_project 2 90003335 90004645 - Gyltl1b protein_coding retained_intron MGP_AJ_T0056254.1 MGP_AJ_G0026125.1 mouse_genomes_project 2 90003561 90008497 - MGP_AJ_P0056254 Gyltl1b protein_coding protein_coding MGP_AJ_T0056255.1 MGP_AJ_G0026125.1 mouse_genomes_project 2 90003611 90005572 - Gyltl1b protein_coding retained_intron MGP_AJ_T0058637.1 MGP_AJ_G0026709.1 mouse_genomes_project 2 154238328 154282785 + MGP_AJ_P0058637 Mmp24 protein_coding protein_coding MGP_AJ_T0058638.1 MGP_AJ_G0026709.1 mouse_genomes_project 2 154270830 154274741 + Mmp24 protein_coding retained_intron MGP_AJ_T0056870.1 MGP_AJ_G0026289.1 mouse_genomes_project 2 116789182 116801289 - MGP_AJ_P0056870 Ccdc32 protein_coding protein_coding MGP_AJ_T0056871.1 MGP_AJ_G0026289.1 mouse_genomes_project 2 116793122 116801289 - MGP_AJ_P0056871 Ccdc32 protein_coding protein_coding MGP_AJ_T0056872.1 MGP_AJ_G0026289.1 mouse_genomes_project 2 116793193 116801273 - MGP_AJ_P0056872 Ccdc32 protein_coding protein_coding MGP_AJ_T0055926.1 MGP_AJ_G0026056.1 mouse_genomes_project 2 86979879 86980824 - MGP_AJ_P0055926 Olfr1234 protein_coding protein_coding MGP_AJ_T0055927.1 MGP_AJ_G0026056.1 mouse_genomes_project 2 86979879 86982258 - MGP_AJ_P0055927 Olfr1234 protein_coding protein_coding MGP_AJ_T0055928.1 MGP_AJ_G0026056.1 mouse_genomes_project 2 86980960 86982262 - Olfr1234 protein_coding processed_transcript MGP_AJ_T0055143.1 MGP_AJ_G0025774.1 mouse_genomes_project 2 66514725 66626837 - MGP_AJ_P0055143 Abcb11 protein_coding protein_coding MGP_AJ_T0055144.1 MGP_AJ_G0025774.1 mouse_genomes_project 2 66514732 66626839 - MGP_AJ_P0055144 Abcb11 protein_coding protein_coding MGP_AJ_T0055145.1 MGP_AJ_G0025774.1 mouse_genomes_project 2 66514732 66626823 - MGP_AJ_P0055145 Abcb11 protein_coding protein_coding MGP_AJ_T0055146.1 MGP_AJ_G0025774.1 mouse_genomes_project 2 66514753 66515522 - Abcb11 protein_coding processed_transcript MGP_AJ_T0017720.1 MGP_AJ_G0015366.1 mouse_genomes_project 2 1254676 1271490 - Gm13187 processed_transcript processed_transcript MGP_AJ_T0017721.1 MGP_AJ_G0015366.1 mouse_genomes_project 2 1258238 1271545 - Gm13187 processed_transcript processed_transcript MGP_AJ_T0017722.1 MGP_AJ_G0015366.1 mouse_genomes_project 2 1270892 1271545 - Gm13187 processed_transcript processed_transcript MGP_AJ_T0003996.1 MGP_AJ_G0003559.1 mouse_genomes_project 2 65757265 65758936 + Gm13596 antisense antisense MGP_AJ_T0057104.1 MGP_AJ_G0026334.1 mouse_genomes_project 2 118534579 118549902 - MGP_AJ_P0057104 Cdan1 protein_coding protein_coding MGP_AJ_T0057105.1 MGP_AJ_G0026334.1 mouse_genomes_project 2 118534935 118549903 - MGP_AJ_P0057105 Cdan1 protein_coding protein_coding MGP_AJ_T0057106.1 MGP_AJ_G0026334.1 mouse_genomes_project 2 118536599 118655385 - Cdan1 protein_coding processed_transcript MGP_AJ_T0057107.1 MGP_AJ_G0026334.1 mouse_genomes_project 2 118537034 118538926 - Cdan1 protein_coding processed_transcript MGP_AJ_T0057108.1 MGP_AJ_G0026334.1 mouse_genomes_project 2 118540771 118542840 - Cdan1 protein_coding retained_intron MGP_AJ_T0057109.1 MGP_AJ_G0026334.1 mouse_genomes_project 2 118543995 118546362 - Cdan1 protein_coding retained_intron MGP_AJ_T0057110.1 MGP_AJ_G0026334.1 mouse_genomes_project 2 118546302 118547023 - Cdan1 protein_coding retained_intron MGP_AJ_T0057111.1 MGP_AJ_G0026334.1 mouse_genomes_project 2 118547012 118549891 - Cdan1 protein_coding processed_transcript MGP_AJ_T0057112.1 MGP_AJ_G0026334.1 mouse_genomes_project 2 118548326 118549875 - Cdan1 protein_coding processed_transcript MGP_AJ_T0007181.1 MGP_AJ_G0005885.1 mouse_genomes_project 2 30887888 30890449 - 9430024E24Rik lincRNA lincRNA MGP_AJ_T0010473.1 MGP_AJ_G0008595.1 mouse_genomes_project 2 157256372 157256498 + Gm26141 miRNA miRNA MGP_AJ_T0013610.1 MGP_AJ_G0011705.1 mouse_genomes_project 2 75402543 75403337 - processed_pseudogene processed_pseudogene MGP_AJ_T0007211.1 MGP_AJ_G0005909.1 mouse_genomes_project 2 50203585 50207367 - Gm26603 lincRNA lincRNA MGP_AJ_T0059613.1 MGP_AJ_G0026928.1 mouse_genomes_project 2 172463928 172511997 + MGP_AJ_P0059613 Vapb protein_coding protein_coding MGP_AJ_T0059614.1 MGP_AJ_G0026928.1 mouse_genomes_project 2 172495752 172504974 + Vapb protein_coding processed_transcript MGP_AJ_T0057629.1 MGP_AJ_G0026450.1 mouse_genomes_project 2 127275002 127304732 - MGP_AJ_P0057629 Ckap2l protein_coding protein_coding MGP_AJ_T0010338.1 MGP_AJ_G0008460.1 mouse_genomes_project 2 7491603 7491724 + Mir669d miRNA miRNA MGP_AJ_T0010422.1 MGP_AJ_G0008544.1 mouse_genomes_project 2 73727594 73727708 + Gm44337 miRNA miRNA MGP_AJ_T0055719.1 MGP_AJ_G0025891.1 mouse_genomes_project 2 82365238 82368420 + MGP_AJ_P0055719 Prg2 protein_coding protein_coding MGP_AJ_T0058529.1 MGP_AJ_G0026688.1 mouse_genomes_project 2 153014848 153049791 + MGP_AJ_P0058529 Zfp341 protein_coding protein_coding MGP_AJ_T0058530.1 MGP_AJ_G0026688.1 mouse_genomes_project 2 153014907 153049748 + MGP_AJ_P0058530 Zfp341 protein_coding nonsense_mediated_decay MGP_AJ_T0058531.1 MGP_AJ_G0026688.1 mouse_genomes_project 2 153014921 153049748 + MGP_AJ_P0058531 Zfp341 protein_coding protein_coding MGP_AJ_T0007157.1 MGP_AJ_G0005868.1 mouse_genomes_project 2 19650211 19656613 + 1700092C17Rik lincRNA lincRNA MGP_AJ_T0007158.1 MGP_AJ_G0005868.1 mouse_genomes_project 2 19656312 19656581 + 1700092C17Rik lincRNA lincRNA MGP_AJ_T0056895.1 MGP_AJ_G0026295.1 mouse_genomes_project 2 116946682 116984285 - MGP_AJ_P0056895 Dnajc17 protein_coding protein_coding MGP_AJ_T0056897.1 MGP_AJ_G0026295.1 mouse_genomes_project 2 116953621 116957854 - Dnajc17 protein_coding processed_transcript MGP_AJ_T0056898.1 MGP_AJ_G0026295.1 mouse_genomes_project 2 116957891 116984272 - Dnajc17 protein_coding retained_intron MGP_AJ_T0011528.1 MGP_AJ_G0009650.1 mouse_genomes_project 2 179686646 179686764 + Gm22842 misc_RNA misc_RNA MGP_AJ_T0056894.1 MGP_AJ_G0026294.1 mouse_genomes_project 2 116942251 116946573 + MGP_AJ_P0056894 Gchfr protein_coding protein_coding MGP_AJ_T0053333.1 MGP_AJ_G0025461.1 mouse_genomes_project 2 23369410 23376968 - MGP_AJ_P0053333 Card9 protein_coding protein_coding MGP_AJ_T0053334.1 MGP_AJ_G0025461.1 mouse_genomes_project 2 23369421 23369996 - Card9 protein_coding processed_transcript MGP_AJ_T0053335.1 MGP_AJ_G0025461.1 mouse_genomes_project 2 23369421 23378139 - MGP_AJ_P0053335 Card9 protein_coding protein_coding MGP_AJ_T0055165.1 MGP_AJ_G0025780.1 mouse_genomes_project 2 67018742 67019988 + Ppig protein_coding processed_transcript MGP_AJ_T0055166.1 MGP_AJ_G0025780.1 mouse_genomes_project 2 67019002 67053967 + MGP_AJ_P0055166 Ppig protein_coding protein_coding MGP_AJ_T0055167.1 MGP_AJ_G0025780.1 mouse_genomes_project 2 67019051 67032329 + Ppig protein_coding processed_transcript MGP_AJ_T0055168.1 MGP_AJ_G0025780.1 mouse_genomes_project 2 67019100 67031363 + Ppig protein_coding processed_transcript MGP_AJ_T0055169.1 MGP_AJ_G0025780.1 mouse_genomes_project 2 67019290 67053967 + MGP_AJ_P0055169 Ppig protein_coding protein_coding MGP_AJ_T0055170.1 MGP_AJ_G0025780.1 mouse_genomes_project 2 67019523 67035145 + Ppig protein_coding processed_transcript MGP_AJ_T0055171.1 MGP_AJ_G0025780.1 mouse_genomes_project 2 67025517 67034848 + MGP_AJ_P0055171 Ppig protein_coding protein_coding MGP_AJ_T0055172.1 MGP_AJ_G0025780.1 mouse_genomes_project 2 67030782 67040528 + Ppig protein_coding processed_transcript MGP_AJ_T0055173.1 MGP_AJ_G0025780.1 mouse_genomes_project 2 67031030 67032082 + Ppig protein_coding processed_transcript MGP_AJ_T0055174.1 MGP_AJ_G0025780.1 mouse_genomes_project 2 67031199 67032099 + Ppig protein_coding processed_transcript MGP_AJ_T0055175.1 MGP_AJ_G0025780.1 mouse_genomes_project 2 67034713 67040614 + Ppig protein_coding processed_transcript MGP_AJ_T0055176.1 MGP_AJ_G0025780.1 mouse_genomes_project 2 67040669 67049511 + Ppig protein_coding processed_transcript MGP_AJ_T0055875.1 MGP_AJ_G0026011.1 mouse_genomes_project 2 85673983 85675150 - MGP_AJ_P0055875 Olfr1167 protein_coding protein_coding MGP_AJ_T0056606.1 MGP_AJ_G0026196.1 mouse_genomes_project 2 104639886 104651797 - MGP_AJ_P0056606 Arl14ep protein_coding protein_coding MGP_AJ_T0056607.1 MGP_AJ_G0026196.1 mouse_genomes_project 2 104641778 104647741 - MGP_AJ_P0056607 Arl14ep protein_coding protein_coding MGP_AJ_T0056608.1 MGP_AJ_G0026196.1 mouse_genomes_project 2 104642540 104646627 - Arl14ep protein_coding retained_intron MGP_AJ_T0056609.1 MGP_AJ_G0026196.1 mouse_genomes_project 2 104644757 104651770 - Arl14ep protein_coding retained_intron MGP_AJ_T0055951.1 MGP_AJ_G0026072.1 mouse_genomes_project 2 87445142 87446048 - MGP_AJ_P0055951 Olfr48 protein_coding protein_coding MGP_AJ_T0003978.1 MGP_AJ_G0003545.1 mouse_genomes_project 2 57618024 57651191 + Gm13571 antisense antisense MGP_AJ_T0003979.1 MGP_AJ_G0003545.1 mouse_genomes_project 2 57635330 57643840 + Gm13571 antisense antisense MGP_AJ_T0013689.1 MGP_AJ_G0011784.1 mouse_genomes_project 2 101177904 101178334 + processed_pseudogene processed_pseudogene MGP_AJ_T0058067.1 MGP_AJ_G0026550.1 mouse_genomes_project 2 142557384 142614971 - MGP_AJ_P0058067 Dzank1 protein_coding protein_coding MGP_AJ_T0058068.1 MGP_AJ_G0026550.1 mouse_genomes_project 2 142557386 142614987 - MGP_AJ_P0058068 Dzank1 protein_coding protein_coding MGP_AJ_T0058069.1 MGP_AJ_G0026550.1 mouse_genomes_project 2 142596554 142614937 - Dzank1 protein_coding retained_intron MGP_AJ_T0058070.1 MGP_AJ_G0026550.1 mouse_genomes_project 2 142610035 142614221 - Dzank1 protein_coding processed_transcript MGP_AJ_T0017827.1 MGP_AJ_G0015431.1 mouse_genomes_project 2 111755308 111824254 + A530058N18Rik processed_transcript antisense MGP_AJ_T0017828.1 MGP_AJ_G0015431.1 mouse_genomes_project 2 111755312 111817361 + A530058N18Rik processed_transcript processed_transcript MGP_AJ_T0059142.1 MGP_AJ_G0026813.1 mouse_genomes_project 2 162856859 162858516 + MGP_AJ_P0059142 Svs5 protein_coding protein_coding MGP_AJ_T0059143.1 MGP_AJ_G0026813.1 mouse_genomes_project 2 162857569 162858516 + MGP_AJ_P0059143 Svs5 protein_coding protein_coding MGP_AJ_T0055894.1 MGP_AJ_G0026028.1 mouse_genomes_project 2 86401018 86401945 - MGP_AJ_P0055894 Olfr1198 protein_coding protein_coding MGP_AJ_T0013712.1 MGP_AJ_G0011807.1 mouse_genomes_project 2 107113653 107114139 - processed_pseudogene processed_pseudogene MGP_AJ_T0013582.1 MGP_AJ_G0011677.1 mouse_genomes_project 2 65038282 65038365 + processed_pseudogene processed_pseudogene MGP_AJ_T0055889.1 MGP_AJ_G0026023.1 mouse_genomes_project 2 86190716 86191655 + MGP_AJ_P0055889 Olfr1188 protein_coding protein_coding MGP_AJ_T0007439.1 MGP_AJ_G0006098.1 mouse_genomes_project 2 179666382 179672655 - Gm14340 lincRNA lincRNA MGP_AJ_T0059746.1 MGP_AJ_G0026959.1 mouse_genomes_project 2 179165603 179175167 - MGP_AJ_P0059746 Gata5 protein_coding protein_coding MGP_AJ_T0099769.1 MGP_AJ_G0037735.1 mouse_genomes_project 2 76802590 76802693 + Gm22606 snRNA snRNA MGP_AJ_T0098657.1 MGP_AJ_G0036641.1 mouse_genomes_project 2 117432007 117432126 + n-R5s204 rRNA rRNA MGP_AJ_T0001047.1 MGP_AJ_G0000978.1 mouse_genomes_project 2 11756540 11757949 + TEC TEC MGP_AJ_T0013653.1 MGP_AJ_G0011748.1 mouse_genomes_project 2 85073978 85074702 - processed_pseudogene processed_pseudogene MGP_AJ_T0052340.1 MGP_AJ_G0025285.1 mouse_genomes_project 2 409254 428471 - MGP_AJ_P0052340 Suv39h2 protein_coding protein_coding MGP_AJ_T0052341.1 MGP_AJ_G0025285.1 mouse_genomes_project 2 411019 428400 - MGP_AJ_P0052341 Suv39h2 protein_coding protein_coding MGP_AJ_T0052342.1 MGP_AJ_G0025285.1 mouse_genomes_project 2 411020 427859 - MGP_AJ_P0052342 Suv39h2 protein_coding protein_coding MGP_AJ_T0052343.1 MGP_AJ_G0025285.1 mouse_genomes_project 2 411042 428409 - MGP_AJ_P0052343 Suv39h2 protein_coding nonsense_mediated_decay MGP_AJ_T0010489.1 MGP_AJ_G0008611.1 mouse_genomes_project 2 179094373 179094449 + Mir3091 miRNA miRNA MGP_AJ_T0057297.1 MGP_AJ_G0026364.1 mouse_genomes_project 2 119893806 119923438 + MGP_AJ_P0057297 Eif3j1 protein_coding protein_coding MGP_AJ_T0057299.1 MGP_AJ_G0026364.1 mouse_genomes_project 2 119893912 119894589 + Eif3j1 protein_coding processed_transcript MGP_AJ_T0056675.1 MGP_AJ_G0026223.1 mouse_genomes_project 2 109124992 109128299 + MGP_AJ_P0056675 protein_coding protein_coding MGP_AJ_T0004192.1 MGP_AJ_G0003697.1 mouse_genomes_project 2 179807470 179819821 + Gm14341 antisense antisense MGP_AJ_T0052731.1 MGP_AJ_G0025350.1 mouse_genomes_project 2 15080388 15084285 - Skida1 protein_coding processed_transcript MGP_AJ_T0052732.1 MGP_AJ_G0025350.1 mouse_genomes_project 2 15083795 15088786 - MGP_AJ_P0052732 Skida1 protein_coding protein_coding MGP_AJ_T0052733.1 MGP_AJ_G0025350.1 mouse_genomes_project 2 15084965 15088159 - MGP_AJ_P0052733 Skida1 protein_coding protein_coding MGP_AJ_T0052734.1 MGP_AJ_G0025350.1 mouse_genomes_project 2 15087425 15088519 - MGP_AJ_P0052734 Skida1 protein_coding protein_coding MGP_AJ_T0052735.1 MGP_AJ_G0025350.1 mouse_genomes_project 2 15087853 15088766 - MGP_AJ_P0052735 Skida1 protein_coding protein_coding MGP_AJ_T0007310.1 MGP_AJ_G0005990.1 mouse_genomes_project 2 114654399 114668692 + D330050G23Rik lincRNA lincRNA MGP_AJ_T0007311.1 MGP_AJ_G0005990.1 mouse_genomes_project 2 114654422 114668529 + D330050G23Rik lincRNA lincRNA MGP_AJ_T0007312.1 MGP_AJ_G0005990.1 mouse_genomes_project 2 114654441 114659505 + D330050G23Rik lincRNA lincRNA MGP_AJ_T0053672.1 MGP_AJ_G0025521.1 mouse_genomes_project 2 26858176 26869246 + MGP_AJ_P0053672 Coq4 protein_coding nonsense_mediated_decay MGP_AJ_T0053673.1 MGP_AJ_G0025521.1 mouse_genomes_project 2 26858903 26867286 + MGP_AJ_P0053673 Coq4 protein_coding nonsense_mediated_decay MGP_AJ_T0053674.1 MGP_AJ_G0025521.1 mouse_genomes_project 2 26858942 26868427 + MGP_AJ_P0053674 Coq4 protein_coding protein_coding MGP_AJ_T0053675.1 MGP_AJ_G0025521.1 mouse_genomes_project 2 26858954 26866686 + MGP_AJ_P0053675 Coq4 protein_coding protein_coding MGP_AJ_T0053676.1 MGP_AJ_G0025521.1 mouse_genomes_project 2 26860660 26861322 + Coq4 protein_coding retained_intron MGP_AJ_T0053677.1 MGP_AJ_G0025521.1 mouse_genomes_project 2 26866248 26867670 + Coq4 protein_coding retained_intron MGP_AJ_T0013460.1 MGP_AJ_G0011555.1 mouse_genomes_project 2 19806387 19806927 - processed_pseudogene processed_pseudogene MGP_AJ_T0054889.1 MGP_AJ_G0025731.1 mouse_genomes_project 2 56740660 56761858 + MGP_AJ_P0054889 Dapl1 protein_coding protein_coding MGP_AJ_T0054890.1 MGP_AJ_G0025731.1 mouse_genomes_project 2 56740676 56761858 + Dapl1 protein_coding processed_transcript MGP_AJ_T0056307.1 MGP_AJ_G0026139.1 mouse_genomes_project 2 91302545 91468646 - MGP_AJ_P0056307 Ext2 protein_coding protein_coding MGP_AJ_T0056308.1 MGP_AJ_G0026139.1 mouse_genomes_project 2 91340525 91468665 - MGP_AJ_P0056308 Ext2 protein_coding protein_coding MGP_AJ_T0056309.1 MGP_AJ_G0026139.1 mouse_genomes_project 2 91341000 91349992 - Ext2 protein_coding retained_intron MGP_AJ_T0056310.1 MGP_AJ_G0026139.1 mouse_genomes_project 2 91341014 91468642 - MGP_AJ_P0056310 Ext2 protein_coding nonsense_mediated_decay MGP_AJ_T0056311.1 MGP_AJ_G0026139.1 mouse_genomes_project 2 91347837 91352182 - MGP_AJ_P0056311 Ext2 protein_coding protein_coding MGP_AJ_T0056312.1 MGP_AJ_G0026139.1 mouse_genomes_project 2 91348420 91349391 - MGP_AJ_P0056312 Ext2 protein_coding protein_coding MGP_AJ_T0056313.1 MGP_AJ_G0026139.1 mouse_genomes_project 2 91360810 91468646 - Ext2 protein_coding processed_transcript MGP_AJ_T0056314.1 MGP_AJ_G0026139.1 mouse_genomes_project 2 91408459 91441701 - Ext2 protein_coding retained_intron MGP_AJ_T0056315.1 MGP_AJ_G0026139.1 mouse_genomes_project 2 91451832 91468662 - MGP_AJ_P0056315 Ext2 protein_coding protein_coding MGP_AJ_T0056316.1 MGP_AJ_G0026139.1 mouse_genomes_project 2 91458848 91468642 - Ext2 protein_coding retained_intron MGP_AJ_T0056317.1 MGP_AJ_G0026139.1 mouse_genomes_project 2 91459273 91468645 - MGP_AJ_P0056317 Ext2 protein_coding protein_coding MGP_AJ_T0056318.1 MGP_AJ_G0026139.1 mouse_genomes_project 2 91459658 91468650 - Ext2 protein_coding processed_transcript MGP_AJ_T0013766.1 MGP_AJ_G0011861.1 mouse_genomes_project 2 130136270 130137255 + processed_pseudogene processed_pseudogene MGP_AJ_T0056519.1 MGP_AJ_G0026178.1 mouse_genomes_project 2 102084065 102153494 - MGP_AJ_P0056519 Hipk3 protein_coding protein_coding MGP_AJ_T0056520.1 MGP_AJ_G0026178.1 mouse_genomes_project 2 102087364 102152738 - MGP_AJ_P0056520 Hipk3 protein_coding protein_coding MGP_AJ_T0056521.1 MGP_AJ_G0026178.1 mouse_genomes_project 2 102087438 102153002 - MGP_AJ_P0056521 Hipk3 protein_coding protein_coding MGP_AJ_T0056522.1 MGP_AJ_G0026178.1 mouse_genomes_project 2 102091309 102096711 - Hipk3 protein_coding processed_transcript MGP_AJ_T0013453.1 MGP_AJ_G0011548.1 mouse_genomes_project 2 16990484 16991915 - processed_pseudogene processed_pseudogene MGP_AJ_T0017840.1 MGP_AJ_G0015436.1 mouse_genomes_project 2 117097041 117101350 - Gm14207 processed_transcript processed_transcript MGP_AJ_T0017841.1 MGP_AJ_G0015436.1 mouse_genomes_project 2 117097041 117102001 - Gm14207 processed_transcript processed_transcript MGP_AJ_T0017842.1 MGP_AJ_G0015436.1 mouse_genomes_project 2 117097194 117101371 - Gm14207 processed_transcript processed_transcript MGP_AJ_T0059068.1 MGP_AJ_G0026786.1 mouse_genomes_project 2 161880816 161943903 - MGP_AJ_P0059068 Jph2 protein_coding protein_coding MGP_AJ_T0059069.1 MGP_AJ_G0026786.1 mouse_genomes_project 2 161880816 161943947 - MGP_AJ_P0059069 Jph2 protein_coding protein_coding MGP_AJ_T0056203.1 MGP_AJ_G0026121.1 mouse_genomes_project 2 89558013 89590802 - MGP_AJ_P0056203 Dgkz protein_coding nonsense_mediated_decay MGP_AJ_T0056204.1 MGP_AJ_G0026121.1 mouse_genomes_project 2 89558013 89601698 - MGP_AJ_P0056204 Dgkz protein_coding protein_coding MGP_AJ_T0056205.1 MGP_AJ_G0026121.1 mouse_genomes_project 2 89558015 89588872 - MGP_AJ_P0056205 Dgkz protein_coding protein_coding MGP_AJ_T0056206.1 MGP_AJ_G0026121.1 mouse_genomes_project 2 89558016 89590815 - MGP_AJ_P0056206 Dgkz protein_coding nonsense_mediated_decay MGP_AJ_T0056207.1 MGP_AJ_G0026121.1 mouse_genomes_project 2 89558016 89575640 - MGP_AJ_P0056207 Dgkz protein_coding protein_coding MGP_AJ_T0056208.1 MGP_AJ_G0026121.1 mouse_genomes_project 2 89558425 89559122 - Dgkz protein_coding retained_intron MGP_AJ_T0056209.1 MGP_AJ_G0026121.1 mouse_genomes_project 2 89558573 89559771 - Dgkz protein_coding retained_intron MGP_AJ_T0056210.1 MGP_AJ_G0026121.1 mouse_genomes_project 2 89558631 89560689 - Dgkz protein_coding retained_intron MGP_AJ_T0056211.1 MGP_AJ_G0026121.1 mouse_genomes_project 2 89558644 89559701 - Dgkz protein_coding retained_intron MGP_AJ_T0056212.1 MGP_AJ_G0026121.1 mouse_genomes_project 2 89558970 89560790 - Dgkz protein_coding retained_intron MGP_AJ_T0056213.1 MGP_AJ_G0026121.1 mouse_genomes_project 2 89561096 89563214 - Dgkz protein_coding processed_transcript MGP_AJ_T0056214.1 MGP_AJ_G0026121.1 mouse_genomes_project 2 89565943 89575524 - MGP_AJ_P0056214 Dgkz protein_coding nonsense_mediated_decay MGP_AJ_T0056215.1 MGP_AJ_G0026121.1 mouse_genomes_project 2 89566194 89570466 - Dgkz protein_coding processed_transcript MGP_AJ_T0004169.1 MGP_AJ_G0003680.1 mouse_genomes_project 2 165545218 165545988 + Gm17096 antisense antisense MGP_AJ_T0007195.1 MGP_AJ_G0005895.1 mouse_genomes_project 2 42437734 42449810 + Gm28643 lincRNA lincRNA MGP_AJ_T0007419.1 MGP_AJ_G0006080.1 mouse_genomes_project 2 168048888 168055288 + Gm14250 lincRNA lincRNA MGP_AJ_T0055004.1 MGP_AJ_G0025747.1 mouse_genomes_project 2 59807333 59882366 - MGP_AJ_P0055004 Fap protein_coding protein_coding MGP_AJ_T0055005.1 MGP_AJ_G0025747.1 mouse_genomes_project 2 59807503 59882271 - Fap protein_coding processed_transcript MGP_AJ_T0055006.1 MGP_AJ_G0025747.1 mouse_genomes_project 2 59807513 59809813 - MGP_AJ_P0055006 Fap protein_coding nonsense_mediated_decay MGP_AJ_T0055007.1 MGP_AJ_G0025747.1 mouse_genomes_project 2 59807574 59882142 - MGP_AJ_P0055007 Fap protein_coding protein_coding MGP_AJ_T0055008.1 MGP_AJ_G0025747.1 mouse_genomes_project 2 59807574 59882142 - MGP_AJ_P0055008 Fap protein_coding protein_coding MGP_AJ_T0055009.1 MGP_AJ_G0025747.1 mouse_genomes_project 2 59807574 59882142 - MGP_AJ_P0055009 Fap protein_coding protein_coding MGP_AJ_T0055010.1 MGP_AJ_G0025747.1 mouse_genomes_project 2 59834916 59871997 - Fap protein_coding retained_intron MGP_AJ_T0055011.1 MGP_AJ_G0025747.1 mouse_genomes_project 2 59843355 59882214 - Fap protein_coding retained_intron MGP_AJ_T0055012.1 MGP_AJ_G0025747.1 mouse_genomes_project 2 59856150 59881862 - MGP_AJ_P0055012 Fap protein_coding protein_coding MGP_AJ_T0055429.1 MGP_AJ_G0025831.1 mouse_genomes_project 2 72107812 72128868 + MGP_AJ_P0055429 Gm28230 protein_coding nonsense_mediated_decay MGP_AJ_T0013590.1 MGP_AJ_G0011685.1 mouse_genomes_project 2 68169277 68170175 + processed_pseudogene processed_pseudogene MGP_AJ_T0013709.1 MGP_AJ_G0011804.1 mouse_genomes_project 2 106199386 106200317 + processed_pseudogene processed_pseudogene MGP_AJ_T0007164.1 MGP_AJ_G0005872.1 mouse_genomes_project 2 22308309 22314953 - AA543186 lincRNA lincRNA MGP_AJ_T0059193.1 MGP_AJ_G0026832.1 mouse_genomes_project 2 163197958 163209256 - MGP_AJ_P0059193 Wfdc11 protein_coding protein_coding MGP_AJ_T0059194.1 MGP_AJ_G0026832.1 mouse_genomes_project 2 163198101 163200716 - MGP_AJ_P0059194 Wfdc11 protein_coding protein_coding MGP_AJ_T0053770.1 MGP_AJ_G0025533.1 mouse_genomes_project 2 27215182 27233176 + MGP_AJ_P0053770 Tbc1d13 protein_coding protein_coding MGP_AJ_T0053771.1 MGP_AJ_G0025533.1 mouse_genomes_project 2 27215182 27218733 + MGP_AJ_P0053771 Tbc1d13 protein_coding nonsense_mediated_decay MGP_AJ_T0053772.1 MGP_AJ_G0025533.1 mouse_genomes_project 2 27215208 27216589 + Tbc1d13 protein_coding retained_intron MGP_AJ_T0053773.1 MGP_AJ_G0025533.1 mouse_genomes_project 2 27215227 27218616 + Tbc1d13 protein_coding processed_transcript MGP_AJ_T0053774.1 MGP_AJ_G0025533.1 mouse_genomes_project 2 27215242 27218113 + MGP_AJ_P0053774 Tbc1d13 protein_coding nonsense_mediated_decay MGP_AJ_T0053775.1 MGP_AJ_G0025533.1 mouse_genomes_project 2 27215257 27218950 + Tbc1d13 protein_coding processed_transcript MGP_AJ_T0053776.1 MGP_AJ_G0025533.1 mouse_genomes_project 2 27218466 27223702 + Tbc1d13 protein_coding processed_transcript MGP_AJ_T0053777.1 MGP_AJ_G0025533.1 mouse_genomes_project 2 27223456 27228256 + Tbc1d13 protein_coding retained_intron MGP_AJ_T0007276.1 MGP_AJ_G0005962.1 mouse_genomes_project 2 92381788 92383514 - Gm13793 lincRNA lincRNA MGP_AJ_T0055826.1 MGP_AJ_G0025973.1 mouse_genomes_project 2 84849342 84850287 + MGP_AJ_P0055826 Olfr1120 protein_coding protein_coding MGP_AJ_T0059227.1 MGP_AJ_G0026845.1 mouse_genomes_project 2 163369677 163372402 - MGP_AJ_P0059227 Neurl2 protein_coding protein_coding MGP_AJ_T0057196.1 MGP_AJ_G0026347.1 mouse_genomes_project 2 119103011 119124331 + MGP_AJ_P0057196 Map1a protein_coding protein_coding MGP_AJ_T0057197.1 MGP_AJ_G0026347.1 mouse_genomes_project 2 119103181 119104455 + Map1a protein_coding processed_transcript MGP_AJ_T0057198.1 MGP_AJ_G0026347.1 mouse_genomes_project 2 119108912 119122931 + MGP_AJ_P0057198 Map1a protein_coding protein_coding MGP_AJ_T0057199.1 MGP_AJ_G0026347.1 mouse_genomes_project 2 119108921 119121114 + Map1a protein_coding processed_transcript MGP_AJ_T0059789.1 MGP_AJ_G0026970.1 mouse_genomes_project 2 179757267 179773858 - MGP_AJ_P0059789 Ythdf1 protein_coding protein_coding MGP_AJ_T0059790.1 MGP_AJ_G0026970.1 mouse_genomes_project 2 179758260 179773858 - MGP_AJ_P0059790 Ythdf1 protein_coding protein_coding MGP_AJ_T0059791.1 MGP_AJ_G0026970.1 mouse_genomes_project 2 179764678 179773296 - MGP_AJ_P0059791 Ythdf1 protein_coding protein_coding MGP_AJ_T0059081.1 MGP_AJ_G0026789.1 mouse_genomes_project 2 162015060 162021311 - MGP_AJ_P0059081 Fitm2 protein_coding protein_coding MGP_AJ_T0052451.1 MGP_AJ_G0025304.1 mouse_genomes_project 2 2888887 2936943 - MGP_AJ_P0052451 Dhtkd1 protein_coding protein_coding MGP_AJ_T0052452.1 MGP_AJ_G0025304.1 mouse_genomes_project 2 2890072 2936894 - MGP_AJ_P0052452 Dhtkd1 protein_coding protein_coding MGP_AJ_T0052453.1 MGP_AJ_G0025304.1 mouse_genomes_project 2 2896812 2905038 - Dhtkd1 protein_coding processed_transcript MGP_AJ_T0053798.1 MGP_AJ_G0025539.1 mouse_genomes_project 2 27345727 27366558 + MGP_AJ_P0053798 Phyhd1 protein_coding protein_coding MGP_AJ_T0053799.1 MGP_AJ_G0025539.1 mouse_genomes_project 2 27346053 27366559 + MGP_AJ_P0053799 Phyhd1 protein_coding protein_coding MGP_AJ_T0053800.1 MGP_AJ_G0025539.1 mouse_genomes_project 2 27346245 27366558 + MGP_AJ_P0053800 Phyhd1 protein_coding protein_coding MGP_AJ_T0053801.1 MGP_AJ_G0025539.1 mouse_genomes_project 2 27346259 27365476 + MGP_AJ_P0053801 Phyhd1 protein_coding protein_coding MGP_AJ_T0053802.1 MGP_AJ_G0025539.1 mouse_genomes_project 2 27346343 27364655 + MGP_AJ_P0053802 Phyhd1 protein_coding protein_coding MGP_AJ_T0053803.1 MGP_AJ_G0025539.1 mouse_genomes_project 2 27346373 27366547 + MGP_AJ_P0053803 Phyhd1 protein_coding protein_coding MGP_AJ_T0053804.1 MGP_AJ_G0025539.1 mouse_genomes_project 2 27346375 27363936 + Phyhd1 protein_coding processed_transcript MGP_AJ_T0053805.1 MGP_AJ_G0025539.1 mouse_genomes_project 2 27346380 27365524 + MGP_AJ_P0053805 Phyhd1 protein_coding protein_coding MGP_AJ_T0053806.1 MGP_AJ_G0025539.1 mouse_genomes_project 2 27346387 27366508 + MGP_AJ_P0053806 Phyhd1 protein_coding nonsense_mediated_decay MGP_AJ_T0053807.1 MGP_AJ_G0025539.1 mouse_genomes_project 2 27346387 27366508 + MGP_AJ_P0053807 Phyhd1 protein_coding nonsense_mediated_decay MGP_AJ_T0053808.1 MGP_AJ_G0025539.1 mouse_genomes_project 2 27361412 27366550 + MGP_AJ_P0053808 Phyhd1 protein_coding nonsense_mediated_decay MGP_AJ_T0053809.1 MGP_AJ_G0025539.1 mouse_genomes_project 2 27364040 27366264 + Phyhd1 protein_coding retained_intron MGP_AJ_T0053810.1 MGP_AJ_G0025539.1 mouse_genomes_project 2 27364087 27364920 + Phyhd1 protein_coding retained_intron MGP_AJ_T0017867.1 MGP_AJ_G0015446.1 mouse_genomes_project 2 127304889 127315294 + Gm14023 processed_transcript processed_transcript MGP_AJ_T0059565.1 MGP_AJ_G0026912.1 mouse_genomes_project 2 171135505 171165492 + MGP_AJ_P0059565 Rtfdc1 protein_coding protein_coding MGP_AJ_T0059566.1 MGP_AJ_G0026912.1 mouse_genomes_project 2 171135551 171162240 + Rtfdc1 protein_coding retained_intron MGP_AJ_T0059569.1 MGP_AJ_G0026912.1 mouse_genomes_project 2 171148024 171165492 + Rtfdc1 protein_coding processed_transcript MGP_AJ_T0057724.1 MGP_AJ_G0026477.1 mouse_genomes_project 2 128694911 128695654 - Ddrgk1 protein_coding retained_intron MGP_AJ_T0057725.1 MGP_AJ_G0026477.1 mouse_genomes_project 2 128695032 128705442 - MGP_AJ_P0057725 Ddrgk1 protein_coding protein_coding MGP_AJ_T0057726.1 MGP_AJ_G0026477.1 mouse_genomes_project 2 128695071 128698234 - Ddrgk1 protein_coding processed_transcript MGP_AJ_T0057727.1 MGP_AJ_G0026477.1 mouse_genomes_project 2 128695167 128702618 - MGP_AJ_P0057727 Ddrgk1 protein_coding nonsense_mediated_decay MGP_AJ_T0057728.1 MGP_AJ_G0026477.1 mouse_genomes_project 2 128696075 128704696 - Ddrgk1 protein_coding processed_transcript MGP_AJ_T0099762.1 MGP_AJ_G0037728.1 mouse_genomes_project 2 50626758 50626864 - Gm25898 snRNA snRNA MGP_AJ_T0010475.1 MGP_AJ_G0008597.1 mouse_genomes_project 2 161606935 161607001 + Mir7003 miRNA miRNA MGP_AJ_T0013644.1 MGP_AJ_G0011739.1 mouse_genomes_project 2 84726671 84727206 + processed_pseudogene processed_pseudogene MGP_AJ_T0059490.1 MGP_AJ_G0026892.1 mouse_genomes_project 2 166863506 166865475 + MGP_AJ_P0059490 Mocs3 protein_coding protein_coding MGP_AJ_T0057682.1 MGP_AJ_G0026463.1 mouse_genomes_project 2 128334070 128409700 + MGP_AJ_P0057682 Ebf4 protein_coding protein_coding MGP_AJ_T0057683.1 MGP_AJ_G0026463.1 mouse_genomes_project 2 128334840 128409700 + Ebf4 protein_coding retained_intron MGP_AJ_T0057684.1 MGP_AJ_G0026463.1 mouse_genomes_project 2 128334840 128409700 + MGP_AJ_P0057684 Ebf4 protein_coding nonsense_mediated_decay MGP_AJ_T0057685.1 MGP_AJ_G0026463.1 mouse_genomes_project 2 128334840 128409700 + MGP_AJ_P0057685 Ebf4 protein_coding protein_coding MGP_AJ_T0057686.1 MGP_AJ_G0026463.1 mouse_genomes_project 2 128334840 128409700 + MGP_AJ_P0057686 Ebf4 protein_coding protein_coding MGP_AJ_T0057687.1 MGP_AJ_G0026463.1 mouse_genomes_project 2 128334840 128409700 + MGP_AJ_P0057687 Ebf4 protein_coding nonsense_mediated_decay MGP_AJ_T0059544.1 MGP_AJ_G0026903.1 mouse_genomes_project 2 169175578 169200291 + MGP_AJ_P0059544 Pfdn4 protein_coding protein_coding MGP_AJ_T0059545.1 MGP_AJ_G0026903.1 mouse_genomes_project 2 169191490 169200347 + MGP_AJ_P0059545 Pfdn4 protein_coding protein_coding MGP_AJ_T0059546.1 MGP_AJ_G0026903.1 mouse_genomes_project 2 169191700 169200086 + MGP_AJ_P0059546 Pfdn4 protein_coding protein_coding MGP_AJ_T0059547.1 MGP_AJ_G0026903.1 mouse_genomes_project 2 169191775 169200347 + MGP_AJ_P0059547 Pfdn4 protein_coding protein_coding MGP_AJ_T0059548.1 MGP_AJ_G0026903.1 mouse_genomes_project 2 169191815 169199936 + MGP_AJ_P0059548 Pfdn4 protein_coding protein_coding MGP_AJ_T0059549.1 MGP_AJ_G0026903.1 mouse_genomes_project 2 169192879 169199943 + MGP_AJ_P0059549 Pfdn4 protein_coding protein_coding MGP_AJ_T0059550.1 MGP_AJ_G0026903.1 mouse_genomes_project 2 169196120 169197858 + MGP_AJ_P0059550 Pfdn4 protein_coding protein_coding MGP_AJ_T0007367.1 MGP_AJ_G0006036.1 mouse_genomes_project 2 150988466 150990423 - Gm26841 lincRNA lincRNA MGP_AJ_T0055788.1 MGP_AJ_G0025937.1 mouse_genomes_project 2 83746904 83747840 - MGP_AJ_P0055788 Olfr1055 protein_coding protein_coding MGP_AJ_T0055760.1 MGP_AJ_G0025910.1 mouse_genomes_project 2 83171754 83172693 + MGP_AJ_P0055760 Olfr1015 protein_coding protein_coding MGP_AJ_T0055689.1 MGP_AJ_G0025882.1 mouse_genomes_project 2 82119744 82124335 + MGP_AJ_P0055689 Ypel4 protein_coding protein_coding MGP_AJ_T0055690.1 MGP_AJ_G0025882.1 mouse_genomes_project 2 82119784 82124335 + MGP_AJ_P0055690 Ypel4 protein_coding nonsense_mediated_decay MGP_AJ_T0055691.1 MGP_AJ_G0025882.1 mouse_genomes_project 2 82119809 82121305 + Ypel4 protein_coding processed_transcript MGP_AJ_T0055692.1 MGP_AJ_G0025882.1 mouse_genomes_project 2 82119913 82124329 + Ypel4 protein_coding retained_intron MGP_AJ_T0058308.1 MGP_AJ_G0026619.1 mouse_genomes_project 2 150510840 150561615 + MGP_AJ_P0058308 Csnk2a1 protein_coding protein_coding MGP_AJ_T0058309.1 MGP_AJ_G0026619.1 mouse_genomes_project 2 150510877 150553105 + Csnk2a1 protein_coding retained_intron MGP_AJ_T0058310.1 MGP_AJ_G0026619.1 mouse_genomes_project 2 150510897 150544823 + MGP_AJ_P0058310 Csnk2a1 protein_coding protein_coding MGP_AJ_T0058311.1 MGP_AJ_G0026619.1 mouse_genomes_project 2 150510909 150541390 + MGP_AJ_P0058311 Csnk2a1 protein_coding protein_coding MGP_AJ_T0058312.1 MGP_AJ_G0026619.1 mouse_genomes_project 2 150510914 150536834 + Csnk2a1 protein_coding retained_intron MGP_AJ_T0013413.1 MGP_AJ_G0011508.1 mouse_genomes_project 2 1939600 1939808 - processed_pseudogene processed_pseudogene MGP_AJ_T0056107.1 MGP_AJ_G0026106.1 mouse_genomes_project 2 88813795 88819243 + MGP_AJ_P0056107 Acp2 protein_coding protein_coding MGP_AJ_T0056108.1 MGP_AJ_G0026106.1 mouse_genomes_project 2 88813819 88824998 + MGP_AJ_P0056108 Acp2 protein_coding protein_coding MGP_AJ_T0056109.1 MGP_AJ_G0026106.1 mouse_genomes_project 2 88813834 88823040 + Acp2 protein_coding retained_intron MGP_AJ_T0056110.1 MGP_AJ_G0026106.1 mouse_genomes_project 2 88813834 88816976 + MGP_AJ_P0056110 Acp2 protein_coding protein_coding MGP_AJ_T0056111.1 MGP_AJ_G0026106.1 mouse_genomes_project 2 88813838 88814585 + Acp2 protein_coding processed_transcript MGP_AJ_T0057617.1 MGP_AJ_G0026448.1 mouse_genomes_project 2 127136247 127140682 + MGP_AJ_P0057617 Chchd5 protein_coding protein_coding MGP_AJ_T0057618.1 MGP_AJ_G0026448.1 mouse_genomes_project 2 127136351 127140561 + Chchd5 protein_coding processed_transcript MGP_AJ_T0057619.1 MGP_AJ_G0026448.1 mouse_genomes_project 2 127136397 127140028 + Chchd5 protein_coding retained_intron MGP_AJ_T0055796.1 MGP_AJ_G0025945.1 mouse_genomes_project 2 83940704 83941652 - MGP_AJ_P0055796 Olfr1079 protein_coding protein_coding MGP_AJ_T0055797.1 MGP_AJ_G0025945.1 mouse_genomes_project 2 83940704 83945241 - MGP_AJ_P0055797 Olfr1079 protein_coding protein_coding MGP_AJ_T0003962.1 MGP_AJ_G0003532.1 mouse_genomes_project 2 32185566 32204993 + Gm13449 antisense antisense MGP_AJ_T0007371.1 MGP_AJ_G0006039.1 mouse_genomes_project 2 154919677 154922253 - Gm14225 lincRNA lincRNA MGP_AJ_T0055194.1 MGP_AJ_G0025785.1 mouse_genomes_project 2 67174666 67189603 - MGP_AJ_P0055194 Mettl5 protein_coding protein_coding MGP_AJ_T0055195.1 MGP_AJ_G0025785.1 mouse_genomes_project 2 67174682 67189585 - MGP_AJ_P0055195 Mettl5 protein_coding nonsense_mediated_decay MGP_AJ_T0055196.1 MGP_AJ_G0025785.1 mouse_genomes_project 2 67174686 67177426 - Mettl5 protein_coding retained_intron MGP_AJ_T0055197.1 MGP_AJ_G0025785.1 mouse_genomes_project 2 67180922 67189592 - Mettl5 protein_coding retained_intron MGP_AJ_T0007147.1 MGP_AJ_G0005860.1 mouse_genomes_project 2 8374619 8379243 + Gm13293 lincRNA lincRNA MGP_AJ_T0053461.1 MGP_AJ_G0025480.1 mouse_genomes_project 2 23961577 23971187 + MGP_AJ_P0053461 Stkld1 protein_coding protein_coding MGP_AJ_T0053462.1 MGP_AJ_G0025480.1 mouse_genomes_project 2 23961599 23981521 + MGP_AJ_P0053462 Stkld1 protein_coding protein_coding MGP_AJ_T0053463.1 MGP_AJ_G0025480.1 mouse_genomes_project 2 23962853 23981416 + MGP_AJ_P0053463 Stkld1 protein_coding unknown_likely_coding MGP_AJ_T0099129.1 MGP_AJ_G0037097.1 mouse_genomes_project 2 179836934 179840286 + 9230112E08Rik sense_overlapping sense_overlapping MGP_AJ_T0099130.1 MGP_AJ_G0037097.1 mouse_genomes_project 2 179837242 179838602 + 9230112E08Rik sense_overlapping sense_overlapping MGP_AJ_T0055576.1 MGP_AJ_G0025858.1 mouse_genomes_project 2 77295465 77588650 - MGP_AJ_P0055576 Pde1a protein_coding protein_coding MGP_AJ_T0055577.1 MGP_AJ_G0025858.1 mouse_genomes_project 2 77314982 77364131 - MGP_AJ_P0055577 Pde1a protein_coding protein_coding MGP_AJ_T0055578.1 MGP_AJ_G0025858.1 mouse_genomes_project 2 77314982 77364131 - MGP_AJ_P0055578 Pde1a protein_coding protein_coding MGP_AJ_T0055579.1 MGP_AJ_G0025858.1 mouse_genomes_project 2 77320991 77387539 - MGP_AJ_P0055579 Pde1a protein_coding protein_coding MGP_AJ_T0055580.1 MGP_AJ_G0025858.1 mouse_genomes_project 2 77361681 77492606 - Pde1a protein_coding processed_transcript MGP_AJ_T0055581.1 MGP_AJ_G0025858.1 mouse_genomes_project 2 77373152 77589274 - Pde1a protein_coding processed_transcript MGP_AJ_T0013512.1 MGP_AJ_G0011607.1 mouse_genomes_project 2 37445732 37446166 + processed_pseudogene processed_pseudogene MGP_AJ_T0056159.1 MGP_AJ_G0026113.1 mouse_genomes_project 2 89244975 89256065 - MGP_AJ_P0056159 F2 protein_coding protein_coding MGP_AJ_T0056160.1 MGP_AJ_G0026113.1 mouse_genomes_project 2 89244984 89256058 - MGP_AJ_P0056160 F2 protein_coding protein_coding MGP_AJ_T0056161.1 MGP_AJ_G0026113.1 mouse_genomes_project 2 89250825 89256046 - F2 protein_coding processed_transcript MGP_AJ_T0056701.1 MGP_AJ_G0026246.1 mouse_genomes_project 2 109992453 110003836 - MGP_AJ_P0056701 Nutm1 protein_coding protein_coding MGP_AJ_T0053573.1 MGP_AJ_G0025503.1 mouse_genomes_project 2 25608791 25616294 - MGP_AJ_P0053573 Cel protein_coding protein_coding MGP_AJ_T0053574.1 MGP_AJ_G0025503.1 mouse_genomes_project 2 25613513 25616335 - Cel protein_coding processed_transcript MGP_AJ_T0007317.1 MGP_AJ_G0005995.1 mouse_genomes_project 2 115595559 115671750 + 4930412B13Rik lincRNA lincRNA MGP_AJ_T0055865.1 MGP_AJ_G0026002.1 mouse_genomes_project 2 85465934 85466879 - MGP_AJ_P0055865 Olfr1155 protein_coding protein_coding MGP_AJ_T0004022.1 MGP_AJ_G0003576.1 mouse_genomes_project 2 72084548 72093203 - Hoxd3os1 antisense antisense MGP_AJ_T0004023.1 MGP_AJ_G0003576.1 mouse_genomes_project 2 72091310 72093675 - Hoxd3os1 antisense antisense MGP_AJ_T0004024.1 MGP_AJ_G0003576.1 mouse_genomes_project 2 72091460 72097142 - Hoxd3os1 antisense antisense MGP_AJ_T0004025.1 MGP_AJ_G0003576.1 mouse_genomes_project 2 72094274 72097276 - Hoxd3os1 antisense antisense MGP_AJ_T0053281.1 MGP_AJ_G0025452.1 mouse_genomes_project 2 22939735 22996599 - MGP_AJ_P0053281 Camsap1 protein_coding protein_coding MGP_AJ_T0053282.1 MGP_AJ_G0025452.1 mouse_genomes_project 2 22939735 22996599 - MGP_AJ_P0053282 Camsap1 protein_coding protein_coding MGP_AJ_T0053283.1 MGP_AJ_G0025452.1 mouse_genomes_project 2 22943056 22952061 - MGP_AJ_P0053283 Camsap1 protein_coding unknown_likely_coding MGP_AJ_T0053284.1 MGP_AJ_G0025452.1 mouse_genomes_project 2 22943262 22948898 - Camsap1 protein_coding processed_transcript MGP_AJ_T0053285.1 MGP_AJ_G0025452.1 mouse_genomes_project 2 22943273 22947951 - Camsap1 protein_coding processed_transcript MGP_AJ_T0053286.1 MGP_AJ_G0025452.1 mouse_genomes_project 2 22958351 22980219 - MGP_AJ_P0053286 Camsap1 protein_coding protein_coding MGP_AJ_T0053287.1 MGP_AJ_G0025452.1 mouse_genomes_project 2 22958370 22979183 - MGP_AJ_P0053287 Camsap1 protein_coding protein_coding MGP_AJ_T0053288.1 MGP_AJ_G0025452.1 mouse_genomes_project 2 22958544 22980127 - MGP_AJ_P0053288 Camsap1 protein_coding protein_coding MGP_AJ_T0053289.1 MGP_AJ_G0025452.1 mouse_genomes_project 2 22969484 22996525 - MGP_AJ_P0053289 Camsap1 protein_coding nonsense_mediated_decay MGP_AJ_T0053290.1 MGP_AJ_G0025452.1 mouse_genomes_project 2 22979176 22996373 - MGP_AJ_P0053290 Camsap1 protein_coding protein_coding MGP_AJ_T0059553.1 MGP_AJ_G0026906.1 mouse_genomes_project 2 170723052 170730286 - MGP_AJ_P0059553 Cbln4 protein_coding protein_coding MGP_AJ_T0054158.1 MGP_AJ_G0025587.1 mouse_genomes_project 2 29718198 29720908 + MGP_AJ_P0054158 Dpm2 protein_coding protein_coding MGP_AJ_T0054159.1 MGP_AJ_G0025587.1 mouse_genomes_project 2 29718198 29720892 + MGP_AJ_P0054159 Dpm2 protein_coding protein_coding MGP_AJ_T0054160.1 MGP_AJ_G0025587.1 mouse_genomes_project 2 29718207 29720410 + Dpm2 protein_coding retained_intron MGP_AJ_T0054161.1 MGP_AJ_G0025587.1 mouse_genomes_project 2 29719375 29720785 + Dpm2 protein_coding retained_intron MGP_AJ_T0057548.1 MGP_AJ_G0026428.1 mouse_genomes_project 2 125577763 125597396 + MGP_AJ_P0057548 Mrps5 protein_coding protein_coding MGP_AJ_T0057549.1 MGP_AJ_G0026428.1 mouse_genomes_project 2 125577960 125595089 + Mrps5 protein_coding retained_intron MGP_AJ_T0057550.1 MGP_AJ_G0026428.1 mouse_genomes_project 2 125577960 125586624 + Mrps5 protein_coding retained_intron MGP_AJ_T0057551.1 MGP_AJ_G0026428.1 mouse_genomes_project 2 125580982 125586262 + MGP_AJ_P0057551 Mrps5 protein_coding protein_coding MGP_AJ_T0057552.1 MGP_AJ_G0026428.1 mouse_genomes_project 2 125586239 125588943 + Mrps5 protein_coding retained_intron MGP_AJ_T0057553.1 MGP_AJ_G0026428.1 mouse_genomes_project 2 125590392 125594422 + Mrps5 protein_coding retained_intron MGP_AJ_T0057554.1 MGP_AJ_G0026428.1 mouse_genomes_project 2 125590599 125591812 + Mrps5 protein_coding retained_intron MGP_AJ_T0057604.1 MGP_AJ_G0026442.1 mouse_genomes_project 2 126933153 126950924 - MGP_AJ_P0057604 Zc3h8 protein_coding protein_coding MGP_AJ_T0058988.1 MGP_AJ_G0026769.1 mouse_genomes_project 2 158891864 158895552 - MGP_AJ_P0058988 Mafb protein_coding protein_coding MGP_AJ_T0007291.1 MGP_AJ_G0005974.1 mouse_genomes_project 2 103336029 103338860 - Paupar lincRNA lincRNA MGP_AJ_T0010412.1 MGP_AJ_G0008534.1 mouse_genomes_project 2 49615606 49615756 + Gm22095 miRNA miRNA MGP_AJ_T0059815.1 MGP_AJ_G0026974.1 mouse_genomes_project 2 179839545 179869956 + MGP_AJ_P0059815 Col20a1 protein_coding protein_coding MGP_AJ_T0059816.1 MGP_AJ_G0026974.1 mouse_genomes_project 2 179839545 179871168 + MGP_AJ_P0059816 Col20a1 protein_coding protein_coding MGP_AJ_T0059817.1 MGP_AJ_G0026974.1 mouse_genomes_project 2 179842073 179871173 + MGP_AJ_P0059817 Col20a1 protein_coding unknown_likely_coding MGP_AJ_T0059818.1 MGP_AJ_G0026974.1 mouse_genomes_project 2 179854068 179857055 + MGP_AJ_P0059818 Col20a1 protein_coding nonsense_mediated_decay MGP_AJ_T0059819.1 MGP_AJ_G0026974.1 mouse_genomes_project 2 179866884 179871168 + MGP_AJ_P0059819 Col20a1 protein_coding protein_coding MGP_AJ_T0058785.1 MGP_AJ_G0026728.1 mouse_genomes_project 2 154792750 154793608 - MGP_AJ_P0058785 Scand1 protein_coding protein_coding MGP_AJ_T0102456.1 MGP_AJ_G0040198.1 mouse_genomes_project 2 18087046 18182964 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0058318.1 MGP_AJ_G0026621.1 mouse_genomes_project 2 150599370 150606034 - Rbck1 protein_coding retained_intron MGP_AJ_T0058319.1 MGP_AJ_G0026621.1 mouse_genomes_project 2 150599370 150615449 - MGP_AJ_P0058319 Rbck1 protein_coding protein_coding MGP_AJ_T0058320.1 MGP_AJ_G0026621.1 mouse_genomes_project 2 150599370 150615690 - MGP_AJ_P0058320 Rbck1 protein_coding protein_coding MGP_AJ_T0058321.1 MGP_AJ_G0026621.1 mouse_genomes_project 2 150601348 150606535 - Rbck1 protein_coding retained_intron MGP_AJ_T0058322.1 MGP_AJ_G0026621.1 mouse_genomes_project 2 150601816 150607401 - MGP_AJ_P0058322 Rbck1 protein_coding protein_coding MGP_AJ_T0058323.1 MGP_AJ_G0026621.1 mouse_genomes_project 2 150605974 150607653 - Rbck1 protein_coding retained_intron MGP_AJ_T0058324.1 MGP_AJ_G0026621.1 mouse_genomes_project 2 150607576 150610794 - Rbck1 protein_coding processed_transcript MGP_AJ_T0058325.1 MGP_AJ_G0026621.1 mouse_genomes_project 2 150609440 150615421 - Rbck1 protein_coding processed_transcript MGP_AJ_T0013580.1 MGP_AJ_G0011675.1 mouse_genomes_project 2 64119611 64121125 + processed_pseudogene processed_pseudogene MGP_AJ_T0055930.1 MGP_AJ_G0026058.1 mouse_genomes_project 2 87038016 87038934 - MGP_AJ_P0055930 Olfr1239 protein_coding protein_coding MGP_AJ_T0059202.1 MGP_AJ_G0026837.1 mouse_genomes_project 2 163282912 163306343 + MGP_AJ_P0059202 Dnttip1 protein_coding protein_coding MGP_AJ_T0059203.1 MGP_AJ_G0026837.1 mouse_genomes_project 2 163282943 163288324 + MGP_AJ_P0059203 Dnttip1 protein_coding protein_coding MGP_AJ_T0059204.1 MGP_AJ_G0026837.1 mouse_genomes_project 2 163282960 163298489 + MGP_AJ_P0059204 Dnttip1 protein_coding protein_coding MGP_AJ_T0059205.1 MGP_AJ_G0026837.1 mouse_genomes_project 2 163291074 163296488 + Dnttip1 protein_coding retained_intron MGP_AJ_T0056198.1 MGP_AJ_G0026119.1 mouse_genomes_project 2 89552395 89553835 + MGP_AJ_P0056198 Chrm4 protein_coding protein_coding MGP_AJ_T0052439.1 MGP_AJ_G0025302.1 mouse_genomes_project 2 2854739 2855594 - Gm13199 protein_coding processed_transcript MGP_AJ_T0052440.1 MGP_AJ_G0025302.1 mouse_genomes_project 2 2854740 2855583 - MGP_AJ_P0052440 Gm13199 protein_coding protein_coding MGP_AJ_T0001073.1 MGP_AJ_G0001004.1 mouse_genomes_project 2 35986762 35987535 - TEC TEC MGP_AJ_T0003937.1 MGP_AJ_G0003512.1 mouse_genomes_project 2 25615193 25630171 + Gm13381 antisense antisense MGP_AJ_T0003938.1 MGP_AJ_G0003512.1 mouse_genomes_project 2 25615459 25630453 + Gm13381 antisense antisense MGP_AJ_T0003953.1 MGP_AJ_G0003526.1 mouse_genomes_project 2 30031364 30033611 - Gm13523 antisense antisense MGP_AJ_T0058361.1 MGP_AJ_G0026643.1 mouse_genomes_project 2 151049651 151060545 + MGP_AJ_P0058361 Cox4i2 protein_coding protein_coding MGP_AJ_T0058362.1 MGP_AJ_G0026643.1 mouse_genomes_project 2 151050576 151060542 + MGP_AJ_P0058362 Cox4i2 protein_coding protein_coding MGP_AJ_T0013831.1 MGP_AJ_G0011926.1 mouse_genomes_project 2 153645131 153645760 - processed_pseudogene processed_pseudogene MGP_AJ_T0101987.1 MGP_AJ_G0039811.1 mouse_genomes_project 2 84311105 84312052 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_AJ_T0059788.1 MGP_AJ_G0026969.1 mouse_genomes_project 2 179621987 179624507 - MGP_AJ_P0059788 Bhlhe23 protein_coding protein_coding MGP_AJ_T0017789.1 MGP_AJ_G0015410.1 mouse_genomes_project 2 84311814 84313134 - Gm13723 processed_transcript processed_transcript MGP_AJ_T0053029.1 MGP_AJ_G0025398.1 mouse_genomes_project 2 22145632 22148214 + MGP_AJ_P0053029 Nrarp protein_coding protein_coding MGP_AJ_T0001100.1 MGP_AJ_G0001028.1 mouse_genomes_project 2 134773995 134774261 + TEC TEC MGP_AJ_T0013603.1 MGP_AJ_G0011698.1 mouse_genomes_project 2 72013260 72013719 + processed_pseudogene processed_pseudogene MGP_AJ_T0059576.1 MGP_AJ_G0026916.1 mouse_genomes_project 2 171573604 171646019 - MGP_AJ_P0059576 Bmp7 protein_coding protein_coding MGP_AJ_T0059577.1 MGP_AJ_G0026916.1 mouse_genomes_project 2 171621962 171645790 - Bmp7 protein_coding retained_intron MGP_AJ_T0057053.1 MGP_AJ_G0026328.1 mouse_genomes_project 2 118270583 118319784 + Capn3 protein_coding processed_transcript MGP_AJ_T0057054.1 MGP_AJ_G0026328.1 mouse_genomes_project 2 118270583 118319644 + Capn3 protein_coding processed_transcript MGP_AJ_T0057055.1 MGP_AJ_G0026328.1 mouse_genomes_project 2 118278157 118319784 + MGP_AJ_P0057055 Capn3 protein_coding protein_coding MGP_AJ_T0057056.1 MGP_AJ_G0026328.1 mouse_genomes_project 2 118278157 118319784 + MGP_AJ_P0057056 Capn3 protein_coding protein_coding MGP_AJ_T0057057.1 MGP_AJ_G0026328.1 mouse_genomes_project 2 118278451 118319784 + MGP_AJ_P0057057 Capn3 protein_coding unknown_likely_coding MGP_AJ_T0057058.1 MGP_AJ_G0026328.1 mouse_genomes_project 2 118291517 118319784 + MGP_AJ_P0057058 Capn3 protein_coding protein_coding MGP_AJ_T0057059.1 MGP_AJ_G0026328.1 mouse_genomes_project 2 118291519 118319784 + MGP_AJ_P0057059 Capn3 protein_coding protein_coding MGP_AJ_T0057060.1 MGP_AJ_G0026328.1 mouse_genomes_project 2 118291569 118319784 + MGP_AJ_P0057060 Capn3 protein_coding protein_coding MGP_AJ_T0057061.1 MGP_AJ_G0026328.1 mouse_genomes_project 2 118291575 118319385 + Capn3 protein_coding processed_transcript MGP_AJ_T0057062.1 MGP_AJ_G0026328.1 mouse_genomes_project 2 118291575 118319784 + MGP_AJ_P0057062 Capn3 protein_coding protein_coding MGP_AJ_T0057063.1 MGP_AJ_G0026328.1 mouse_genomes_project 2 118298922 118299197 + Capn3 protein_coding processed_transcript MGP_AJ_T0057064.1 MGP_AJ_G0026328.1 mouse_genomes_project 2 118315113 118318088 + Capn3 protein_coding processed_transcript MGP_AJ_T0057065.1 MGP_AJ_G0026328.1 mouse_genomes_project 2 118316100 118317913 + Capn3 protein_coding processed_transcript MGP_AJ_T0057066.1 MGP_AJ_G0026328.1 mouse_genomes_project 2 118316174 118318266 + Capn3 protein_coding processed_transcript MGP_AJ_T0058379.1 MGP_AJ_G0026646.1 mouse_genomes_project 2 151210673 151222088 + MGP_AJ_P0058379 Mylk2 protein_coding protein_coding MGP_AJ_T0058668.1 MGP_AJ_G0026715.1 mouse_genomes_project 2 154408291 154412636 - MGP_AJ_P0058668 Gdf5 protein_coding protein_coding MGP_AJ_T0059318.1 MGP_AJ_G0026858.1 mouse_genomes_project 2 163904870 163922522 - MGP_AJ_P0059318 Zfp663 protein_coding protein_coding MGP_AJ_T0059319.1 MGP_AJ_G0026858.1 mouse_genomes_project 2 163904871 163913802 - MGP_AJ_P0059319 Zfp663 protein_coding protein_coding MGP_AJ_T0059320.1 MGP_AJ_G0026858.1 mouse_genomes_project 2 163907384 163913067 - Zfp663 protein_coding processed_transcript MGP_AJ_T0059321.1 MGP_AJ_G0026858.1 mouse_genomes_project 2 163907617 163922516 - MGP_AJ_P0059321 Zfp663 protein_coding protein_coding MGP_AJ_T0007327.1 MGP_AJ_G0006003.1 mouse_genomes_project 2 123236608 123237900 - Gm14003 lincRNA lincRNA MGP_AJ_T0055881.1 MGP_AJ_G0026017.1 mouse_genomes_project 2 86033589 86034519 - MGP_AJ_P0055881 Olfr1180 protein_coding protein_coding MGP_AJ_T0058504.1 MGP_AJ_G0026681.1 mouse_genomes_project 2 152809493 152939411 + MGP_AJ_P0058504 Cbfa2t2 protein_coding protein_coding MGP_AJ_T0058505.1 MGP_AJ_G0026681.1 mouse_genomes_project 2 152809496 152926777 + MGP_AJ_P0058505 Cbfa2t2 protein_coding protein_coding MGP_AJ_T0058506.1 MGP_AJ_G0026681.1 mouse_genomes_project 2 152809507 152939411 + MGP_AJ_P0058506 Cbfa2t2 protein_coding protein_coding MGP_AJ_T0058507.1 MGP_AJ_G0026681.1 mouse_genomes_project 2 152809547 152918199 + MGP_AJ_P0058507 Cbfa2t2 protein_coding protein_coding MGP_AJ_T0058508.1 MGP_AJ_G0026681.1 mouse_genomes_project 2 152809854 152905232 + MGP_AJ_P0058508 Cbfa2t2 protein_coding protein_coding MGP_AJ_T0058509.1 MGP_AJ_G0026681.1 mouse_genomes_project 2 152900972 152939407 + MGP_AJ_P0058509 Cbfa2t2 protein_coding protein_coding MGP_AJ_T0058510.1 MGP_AJ_G0026681.1 mouse_genomes_project 2 152916336 152918427 + Cbfa2t2 protein_coding retained_intron MGP_AJ_T0058511.1 MGP_AJ_G0026681.1 mouse_genomes_project 2 152924348 152931861 + Cbfa2t2 protein_coding retained_intron MGP_AJ_T0058512.1 MGP_AJ_G0026681.1 mouse_genomes_project 2 152931300 152935024 + Cbfa2t2 protein_coding retained_intron MGP_AJ_T0003975.1 MGP_AJ_G0003543.1 mouse_genomes_project 2 55492349 55501610 + Gm13546 antisense antisense MGP_AJ_T0003976.1 MGP_AJ_G0003543.1 mouse_genomes_project 2 55494299 55500884 + Gm13546 antisense antisense MGP_AJ_T0054872.1 MGP_AJ_G0025729.1 mouse_genomes_project 2 56163099 56206387 + MGP_AJ_P0054872 Gm11099 protein_coding protein_coding MGP_AJ_T0099795.1 MGP_AJ_G0037761.1 mouse_genomes_project 2 150703208 150703271 + Gm27343 snRNA snRNA MGP_AJ_T0056218.1 MGP_AJ_G0026124.1 mouse_genomes_project 2 89818525 89995459 + MGP_AJ_P0056218 Phf21a protein_coding protein_coding MGP_AJ_T0056219.1 MGP_AJ_G0026124.1 mouse_genomes_project 2 89818594 89995465 + MGP_AJ_P0056219 Phf21a protein_coding protein_coding MGP_AJ_T0056220.1 MGP_AJ_G0026124.1 mouse_genomes_project 2 89818687 89848617 + Phf21a protein_coding processed_transcript MGP_AJ_T0056221.1 MGP_AJ_G0026124.1 mouse_genomes_project 2 89818695 89994488 + MGP_AJ_P0056221 Phf21a protein_coding protein_coding MGP_AJ_T0056222.1 MGP_AJ_G0026124.1 mouse_genomes_project 2 89818695 89953841 + MGP_AJ_P0056222 Phf21a protein_coding protein_coding MGP_AJ_T0056223.1 MGP_AJ_G0026124.1 mouse_genomes_project 2 89818721 89849126 + Phf21a protein_coding retained_intron MGP_AJ_T0056224.1 MGP_AJ_G0026124.1 mouse_genomes_project 2 89818721 89855990 + MGP_AJ_P0056224 Phf21a protein_coding protein_coding MGP_AJ_T0056225.1 MGP_AJ_G0026124.1 mouse_genomes_project 2 89819248 89862766 + MGP_AJ_P0056225 Phf21a protein_coding protein_coding MGP_AJ_T0056226.1 MGP_AJ_G0026124.1 mouse_genomes_project 2 89819954 89855993 + MGP_AJ_P0056226 Phf21a protein_coding protein_coding MGP_AJ_T0056227.1 MGP_AJ_G0026124.1 mouse_genomes_project 2 89819978 89994496 + MGP_AJ_P0056227 Phf21a protein_coding protein_coding MGP_AJ_T0056228.1 MGP_AJ_G0026124.1 mouse_genomes_project 2 89820960 89856005 + MGP_AJ_P0056228 Phf21a protein_coding protein_coding MGP_AJ_T0056229.1 MGP_AJ_G0026124.1 mouse_genomes_project 2 89855882 89998296 + MGP_AJ_P0056229 Phf21a protein_coding protein_coding MGP_AJ_T0056230.1 MGP_AJ_G0026124.1 mouse_genomes_project 2 89855882 89998296 + MGP_AJ_P0056230 Phf21a protein_coding protein_coding MGP_AJ_T0056231.1 MGP_AJ_G0026124.1 mouse_genomes_project 2 89855882 89998296 + MGP_AJ_P0056231 Phf21a protein_coding protein_coding MGP_AJ_T0056232.1 MGP_AJ_G0026124.1 mouse_genomes_project 2 89855882 89998296 + MGP_AJ_P0056232 Phf21a protein_coding protein_coding MGP_AJ_T0056233.1 MGP_AJ_G0026124.1 mouse_genomes_project 2 89855907 89998296 + MGP_AJ_P0056233 Phf21a protein_coding protein_coding MGP_AJ_T0056234.1 MGP_AJ_G0026124.1 mouse_genomes_project 2 89855970 89960657 + MGP_AJ_P0056234 Phf21a protein_coding protein_coding MGP_AJ_T0056235.1 MGP_AJ_G0026124.1 mouse_genomes_project 2 89862769 89994025 + MGP_AJ_P0056235 Phf21a protein_coding protein_coding MGP_AJ_T0056236.1 MGP_AJ_G0026124.1 mouse_genomes_project 2 89954003 89964401 + MGP_AJ_P0056236 Phf21a protein_coding protein_coding MGP_AJ_T0056237.1 MGP_AJ_G0026124.1 mouse_genomes_project 2 89964429 89992772 + MGP_AJ_P0056237 Phf21a protein_coding protein_coding MGP_AJ_T0056238.1 MGP_AJ_G0026124.1 mouse_genomes_project 2 89982459 89990585 + Phf21a protein_coding retained_intron MGP_AJ_T0058274.1 MGP_AJ_G0026607.1 mouse_genomes_project 2 149851002 149868370 + MGP_AJ_P0058274 Sdcbp2 protein_coding protein_coding MGP_AJ_T0013784.1 MGP_AJ_G0011879.1 mouse_genomes_project 2 139191431 139192217 + processed_pseudogene processed_pseudogene MGP_AJ_T0004140.1 MGP_AJ_G0003659.1 mouse_genomes_project 2 154813496 154820834 - Gm14252 antisense antisense MGP_AJ_T0052639.1 MGP_AJ_G0025330.1 mouse_genomes_project 2 10088512 10096826 - MGP_AJ_P0052639 C1ql3 protein_coding protein_coding MGP_AJ_T0013823.1 MGP_AJ_G0011918.1 mouse_genomes_project 2 150743038 150743346 + processed_pseudogene processed_pseudogene MGP_AJ_T0099741.1 MGP_AJ_G0037707.1 mouse_genomes_project 2 247847 247988 - Gm22005 snRNA snRNA MGP_AJ_T0053975.1 MGP_AJ_G0025561.1 mouse_genomes_project 2 28360854 28412187 + MGP_AJ_P0053975 Ncs1 protein_coding protein_coding MGP_AJ_T0053976.1 MGP_AJ_G0025561.1 mouse_genomes_project 2 28361197 28408521 + MGP_AJ_P0053976 Ncs1 protein_coding nonsense_mediated_decay MGP_AJ_T0055794.1 MGP_AJ_G0025943.1 mouse_genomes_project 2 83887732 83888701 - MGP_AJ_P0055794 Olfr228 protein_coding protein_coding MGP_AJ_T0007292.1 MGP_AJ_G0005975.1 mouse_genomes_project 2 103717488 103719516 - Gm29053 lincRNA lincRNA MGP_AJ_T0053757.1 MGP_AJ_G0025531.1 mouse_genomes_project 2 27169296 27171372 - Zdhhc12 protein_coding processed_transcript MGP_AJ_T0053758.1 MGP_AJ_G0025531.1 mouse_genomes_project 2 27169296 27172001 - MGP_AJ_P0053758 Zdhhc12 protein_coding protein_coding MGP_AJ_T0053759.1 MGP_AJ_G0025531.1 mouse_genomes_project 2 27169303 27171988 - MGP_AJ_P0053759 Zdhhc12 protein_coding protein_coding MGP_AJ_T0053760.1 MGP_AJ_G0025531.1 mouse_genomes_project 2 27169683 27171969 - Zdhhc12 protein_coding retained_intron MGP_AJ_T0055770.1 MGP_AJ_G0025919.1 mouse_genomes_project 2 83375690 83376647 + MGP_AJ_P0055770 Olfr1030 protein_coding protein_coding MGP_AJ_T0056112.1 MGP_AJ_G0026107.1 mouse_genomes_project 2 88822469 88846905 - Ddb2 protein_coding processed_transcript MGP_AJ_T0056113.1 MGP_AJ_G0026107.1 mouse_genomes_project 2 88822485 88848956 - Ddb2 protein_coding processed_transcript MGP_AJ_T0056114.1 MGP_AJ_G0026107.1 mouse_genomes_project 2 88822500 88848934 - MGP_AJ_P0056114 Ddb2 protein_coding protein_coding MGP_AJ_T0056115.1 MGP_AJ_G0026107.1 mouse_genomes_project 2 88822518 88849009 - Ddb2 protein_coding processed_transcript MGP_AJ_T0056116.1 MGP_AJ_G0026107.1 mouse_genomes_project 2 88822753 88849031 - MGP_AJ_P0056116 Ddb2 protein_coding protein_coding MGP_AJ_T0056661.1 MGP_AJ_G0026210.1 mouse_genomes_project 2 108729113 108746213 - MGP_AJ_P0056661 Gm13941 protein_coding protein_coding MGP_AJ_T0003945.1 MGP_AJ_G0003518.1 mouse_genomes_project 2 28319201 28321080 - Gm13405 antisense antisense MGP_AJ_T0052913.1 MGP_AJ_G0025385.1 mouse_genomes_project 2 21280712 21295350 + MGP_AJ_P0052913 Il1rn protein_coding protein_coding MGP_AJ_T0052914.1 MGP_AJ_G0025385.1 mouse_genomes_project 2 21280715 21283269 + Il1rn protein_coding retained_intron MGP_AJ_T0052915.1 MGP_AJ_G0025385.1 mouse_genomes_project 2 21280715 21293317 + MGP_AJ_P0052915 Il1rn protein_coding protein_coding MGP_AJ_T0052916.1 MGP_AJ_G0025385.1 mouse_genomes_project 2 21289147 21293667 + MGP_AJ_P0052916 Il1rn protein_coding protein_coding MGP_AJ_T0052917.1 MGP_AJ_G0025385.1 mouse_genomes_project 2 21289169 21294792 + MGP_AJ_P0052917 Il1rn protein_coding protein_coding MGP_AJ_T0052918.1 MGP_AJ_G0025385.1 mouse_genomes_project 2 21289207 21290214 + Il1rn protein_coding processed_transcript MGP_AJ_T0099779.1 MGP_AJ_G0037745.1 mouse_genomes_project 2 115009776 115009940 + Gm25189 snRNA snRNA MGP_AJ_T0017925.1 MGP_AJ_G0015475.1 mouse_genomes_project 2 179613843 179623010 - Gm14343 processed_transcript processed_transcript MGP_AJ_T0053813.1 MGP_AJ_G0025542.1 mouse_genomes_project 2 27370806 27429767 + MGP_AJ_P0053813 Nup188 protein_coding protein_coding MGP_AJ_T0053814.1 MGP_AJ_G0025542.1 mouse_genomes_project 2 27370806 27393101 + MGP_AJ_P0053814 Nup188 protein_coding nonsense_mediated_decay MGP_AJ_T0053815.1 MGP_AJ_G0025542.1 mouse_genomes_project 2 27370826 27389461 + Nup188 protein_coding processed_transcript MGP_AJ_T0053816.1 MGP_AJ_G0025542.1 mouse_genomes_project 2 27370833 27389179 + MGP_AJ_P0053816 Nup188 protein_coding protein_coding MGP_AJ_T0053817.1 MGP_AJ_G0025542.1 mouse_genomes_project 2 27370836 27389178 + MGP_AJ_P0053817 Nup188 protein_coding protein_coding MGP_AJ_T0053818.1 MGP_AJ_G0025542.1 mouse_genomes_project 2 27370838 27412066 + Nup188 protein_coding retained_intron MGP_AJ_T0053819.1 MGP_AJ_G0025542.1 mouse_genomes_project 2 27428440 27429646 + Nup188 protein_coding retained_intron MGP_AJ_T0056788.1 MGP_AJ_G0026269.1 mouse_genomes_project 2 114882966 114943916 + MGP_AJ_P0056788 Spred1 protein_coding protein_coding MGP_AJ_T0056789.1 MGP_AJ_G0026269.1 mouse_genomes_project 2 114883230 114934517 + MGP_AJ_P0056789 Spred1 protein_coding protein_coding MGP_AJ_T0011493.1 MGP_AJ_G0009615.1 mouse_genomes_project 2 33285400 33285543 - Gm27953 misc_RNA misc_RNA MGP_AJ_T0010377.1 MGP_AJ_G0008499.1 mouse_genomes_project 2 19555787 19555900 + Gm23636 miRNA miRNA MGP_AJ_T0017797.1 MGP_AJ_G0015417.1 mouse_genomes_project 2 88515143 88524296 - Ptpmt1 processed_transcript processed_transcript MGP_AJ_T0017798.1 MGP_AJ_G0015417.1 mouse_genomes_project 2 88517140 88524697 - Ptpmt1 processed_transcript processed_transcript MGP_AJ_T0017799.1 MGP_AJ_G0015417.1 mouse_genomes_project 2 88517140 88524489 - Ptpmt1 processed_transcript processed_transcript MGP_AJ_T0017800.1 MGP_AJ_G0015417.1 mouse_genomes_project 2 88517421 88524034 - Ptpmt1 processed_transcript processed_transcript MGP_AJ_T0017801.1 MGP_AJ_G0015417.1 mouse_genomes_project 2 88520465 88524107 - Ptpmt1 processed_transcript processed_transcript MGP_AJ_T0007280.1 MGP_AJ_G0005966.1 mouse_genomes_project 2 96976080 96976565 - Gm29235 lincRNA lincRNA MGP_AJ_T0011513.1 MGP_AJ_G0009635.1 mouse_genomes_project 2 125461879 125462171 - Gm22613 misc_RNA misc_RNA MGP_AJ_T0099780.1 MGP_AJ_G0037746.1 mouse_genomes_project 2 115839527 115839685 - Gm25308 snRNA snRNA MGP_AJ_T0013863.1 MGP_AJ_G0011958.1 mouse_genomes_project 2 163029355 163030080 + processed_pseudogene processed_pseudogene MGP_AJ_T0052392.1 MGP_AJ_G0025293.1 mouse_genomes_project 2 1860529 1890009 + MGP_AJ_P0052392 Sephs1 protein_coding protein_coding MGP_AJ_T0052393.1 MGP_AJ_G0025293.1 mouse_genomes_project 2 1861207 1887589 + MGP_AJ_P0052393 Sephs1 protein_coding protein_coding MGP_AJ_T0052394.1 MGP_AJ_G0025293.1 mouse_genomes_project 2 1863019 1868089 + Sephs1 protein_coding processed_transcript MGP_AJ_T0052395.1 MGP_AJ_G0025293.1 mouse_genomes_project 2 1863346 1884985 + Sephs1 protein_coding processed_transcript MGP_AJ_T0055813.1 MGP_AJ_G0025960.1 mouse_genomes_project 2 84419495 84420428 - MGP_AJ_P0055813 Olfr1101 protein_coding protein_coding MGP_AJ_T0003911.1 MGP_AJ_G0003494.1 mouse_genomes_project 2 17329457 17355616 - Gm17171 antisense antisense MGP_AJ_T0056274.1 MGP_AJ_G0026131.1 mouse_genomes_project 2 90233946 90249505 + MGP_AJ_P0056274 Chst1 protein_coding protein_coding MGP_AJ_T0054496.1 MGP_AJ_G0025642.1 mouse_genomes_project 2 33615923 33616853 + MGP_AJ_P0054496 Olfr339 protein_coding protein_coding MGP_AJ_T0056696.1 MGP_AJ_G0026244.1 mouse_genomes_project 2 109861077 109862169 - MGP_AJ_P0056696 protein_coding protein_coding MGP_AJ_T0001105.1 MGP_AJ_G0001033.1 mouse_genomes_project 2 168621673 168622846 - TEC TEC MGP_AJ_T0001106.1 MGP_AJ_G0001033.1 mouse_genomes_project 2 168621786 168622646 - TEC TEC MGP_AJ_T0057634.1 MGP_AJ_G0026453.1 mouse_genomes_project 2 127462654 127539335 - MGP_AJ_P0057634 F830045P16Rik protein_coding protein_coding MGP_AJ_T0007238.1 MGP_AJ_G0005932.1 mouse_genomes_project 2 71532296 71548033 + Gm13667 lincRNA lincRNA MGP_AJ_T0055867.1 MGP_AJ_G0026004.1 mouse_genomes_project 2 85485557 85486496 - MGP_AJ_P0055867 Olfr1157 protein_coding protein_coding MGP_AJ_T0059185.1 MGP_AJ_G0026827.1 mouse_genomes_project 2 163121299 163126551 - MGP_AJ_P0059185 Eppin protein_coding protein_coding MGP_AJ_T0017784.1 MGP_AJ_G0015405.1 mouse_genomes_project 2 73092943 73098222 + E030042O20Rik processed_transcript processed_transcript MGP_AJ_T0055457.1 MGP_AJ_G0025841.1 mouse_genomes_project 2 73778129 73791976 + MGP_AJ_P0055457 Rbm45 protein_coding protein_coding MGP_AJ_T0053739.1 MGP_AJ_G0025528.1 mouse_genomes_project 2 27106466 27123756 - MGP_AJ_P0053739 Wdr34 protein_coding protein_coding MGP_AJ_T0053740.1 MGP_AJ_G0025528.1 mouse_genomes_project 2 27106832 27107426 - Wdr34 protein_coding retained_intron MGP_AJ_T0053741.1 MGP_AJ_G0025528.1 mouse_genomes_project 2 27108714 27109967 - Wdr34 protein_coding retained_intron MGP_AJ_T0053742.1 MGP_AJ_G0025528.1 mouse_genomes_project 2 27122049 27123736 - Wdr34 protein_coding processed_transcript MGP_AJ_T0098948.1 MGP_AJ_G0036926.1 mouse_genomes_project 2 56006588 56036211 + Gm13558 sense_intronic sense_intronic MGP_AJ_T0059287.1 MGP_AJ_G0026854.1 mouse_genomes_project 2 163622563 163634536 - MGP_AJ_P0059287 1700025C18Rik protein_coding protein_coding MGP_AJ_T0055909.1 MGP_AJ_G0026041.1 mouse_genomes_project 2 86667360 86668296 - MGP_AJ_P0055909 Olfr1216 protein_coding protein_coding MGP_AJ_T0055918.1 MGP_AJ_G0026049.1 mouse_genomes_project 2 86849137 86850070 - MGP_AJ_P0055918 Olfr1226 protein_coding protein_coding MGP_AJ_T0059678.1 MGP_AJ_G0026944.1 mouse_genomes_project 2 177232343 177242354 + MGP_AJ_P0059678 Fam217b protein_coding protein_coding MGP_AJ_T0059679.1 MGP_AJ_G0026944.1 mouse_genomes_project 2 177232509 177238198 + Fam217b protein_coding processed_transcript MGP_AJ_T0004100.1 MGP_AJ_G0003626.1 mouse_genomes_project 2 130747750 130752891 - Gm14097 antisense antisense MGP_AJ_T0001049.1 MGP_AJ_G0000980.1 mouse_genomes_project 2 11818688 11821070 - TEC TEC MGP_AJ_T0058463.1 MGP_AJ_G0026666.1 mouse_genomes_project 2 152195952 152216065 + MGP_AJ_P0058463 Bpifb2 protein_coding protein_coding MGP_AJ_T0058464.1 MGP_AJ_G0026666.1 mouse_genomes_project 2 152195982 152197293 + Bpifb2 protein_coding retained_intron MGP_AJ_T0059914.1 MGP_AJ_G0026990.1 mouse_genomes_project 2 180239845 180311254 - MGP_AJ_P0059914 Zbtb46 protein_coding protein_coding MGP_AJ_T0059915.1 MGP_AJ_G0026990.1 mouse_genomes_project 2 180242969 180276436 - MGP_AJ_P0059915 Zbtb46 protein_coding protein_coding MGP_AJ_T0059916.1 MGP_AJ_G0026990.1 mouse_genomes_project 2 180262872 180311254 - MGP_AJ_P0059916 Zbtb46 protein_coding protein_coding MGP_AJ_T0059917.1 MGP_AJ_G0026990.1 mouse_genomes_project 2 180273585 180311254 - Zbtb46 protein_coding retained_intron MGP_AJ_T0059918.1 MGP_AJ_G0026990.1 mouse_genomes_project 2 180276275 180311207 - MGP_AJ_P0059918 Zbtb46 protein_coding protein_coding MGP_AJ_T0099754.1 MGP_AJ_G0037720.1 mouse_genomes_project 2 27005380 27005477 - Gm23865 snRNA snRNA MGP_AJ_T0059554.1 MGP_AJ_G0026907.1 mouse_genomes_project 2 170940830 170943457 + MGP_AJ_P0059554 Mc3r protein_coding protein_coding MGP_AJ_T0058019.1 MGP_AJ_G0026537.1 mouse_genomes_project 2 140662955 140947948 - MGP_AJ_P0058019 Kif16b protein_coding protein_coding MGP_AJ_T0058020.1 MGP_AJ_G0026537.1 mouse_genomes_project 2 140664192 140694217 - Kif16b protein_coding retained_intron MGP_AJ_T0017748.1 MGP_AJ_G0015381.1 mouse_genomes_project 2 25073962 25078983 - Gm13372 processed_transcript processed_transcript MGP_AJ_T0056504.1 MGP_AJ_G0026173.1 mouse_genomes_project 2 101714007 101714294 - MGP_AJ_P0056504 protein_coding protein_coding MGP_AJ_T0053314.1 MGP_AJ_G0025457.1 mouse_genomes_project 2 23264340 23315870 - MGP_AJ_P0053314 Ccdc187 protein_coding unknown_likely_coding MGP_AJ_T0053316.1 MGP_AJ_G0025457.1 mouse_genomes_project 2 23292185 23316044 - MGP_AJ_P0053316 Ccdc187 protein_coding protein_coding MGP_AJ_T0053317.1 MGP_AJ_G0025457.1 mouse_genomes_project 2 23301631 23309645 - MGP_AJ_P0053317 Ccdc187 protein_coding protein_coding MGP_AJ_T0059900.1 MGP_AJ_G0026987.1 mouse_genomes_project 2 180217036 180232885 + MGP_AJ_P0059900 Zgpat protein_coding protein_coding MGP_AJ_T0059901.1 MGP_AJ_G0026987.1 mouse_genomes_project 2 180217513 180232873 + MGP_AJ_P0059901 Zgpat protein_coding protein_coding MGP_AJ_T0059902.1 MGP_AJ_G0026987.1 mouse_genomes_project 2 180217531 180235719 + MGP_AJ_P0059902 Zgpat protein_coding nonsense_mediated_decay MGP_AJ_T0059903.1 MGP_AJ_G0026987.1 mouse_genomes_project 2 180217560 180235717 + Zgpat protein_coding retained_intron MGP_AJ_T0059904.1 MGP_AJ_G0026987.1 mouse_genomes_project 2 180230484 180231910 + Zgpat protein_coding retained_intron MGP_AJ_T0059905.1 MGP_AJ_G0026987.1 mouse_genomes_project 2 180231729 180232829 + MGP_AJ_P0059905 Zgpat protein_coding protein_coding MGP_AJ_T0054462.1 MGP_AJ_G0025634.1 mouse_genomes_project 2 32949652 33180980 - MGP_AJ_P0054462 Ttll11 protein_coding protein_coding MGP_AJ_T0054463.1 MGP_AJ_G0025634.1 mouse_genomes_project 2 32949652 33180980 - MGP_AJ_P0054463 Ttll11 protein_coding protein_coding MGP_AJ_T0054464.1 MGP_AJ_G0025634.1 mouse_genomes_project 2 32950073 33181122 - MGP_AJ_P0054464 Ttll11 protein_coding nonsense_mediated_decay MGP_AJ_T0054465.1 MGP_AJ_G0025634.1 mouse_genomes_project 2 32950358 33141846 - MGP_AJ_P0054465 Ttll11 protein_coding protein_coding MGP_AJ_T0054466.1 MGP_AJ_G0025634.1 mouse_genomes_project 2 32985664 33082916 - Ttll11 protein_coding processed_transcript MGP_AJ_T0054467.1 MGP_AJ_G0025634.1 mouse_genomes_project 2 33090199 33145987 - Ttll11 protein_coding processed_transcript MGP_AJ_T0054468.1 MGP_AJ_G0025634.1 mouse_genomes_project 2 33103262 33181269 - Ttll11 protein_coding processed_transcript MGP_AJ_T0054469.1 MGP_AJ_G0025634.1 mouse_genomes_project 2 33103557 33151631 - MGP_AJ_P0054469 Ttll11 protein_coding protein_coding MGP_AJ_T0054470.1 MGP_AJ_G0025634.1 mouse_genomes_project 2 33103577 33153268 - MGP_AJ_P0054470 Ttll11 protein_coding protein_coding MGP_AJ_T0013826.1 MGP_AJ_G0011921.1 mouse_genomes_project 2 151040072 151040680 + processed_pseudogene processed_pseudogene MGP_AJ_T0102476.1 MGP_AJ_G0040218.1 mouse_genomes_project 2 83046753 83047207 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0056395.1 MGP_AJ_G0026154.1 mouse_genomes_project 2 99493621 99504491 + Commd9 protein_coding processed_transcript MGP_AJ_T0056396.1 MGP_AJ_G0026154.1 mouse_genomes_project 2 99493627 99509165 + MGP_AJ_P0056396 Commd9 protein_coding protein_coding MGP_AJ_T0056397.1 MGP_AJ_G0026154.1 mouse_genomes_project 2 99493634 99504757 + Commd9 protein_coding retained_intron MGP_AJ_T0056398.1 MGP_AJ_G0026154.1 mouse_genomes_project 2 99493637 99502950 + Commd9 protein_coding retained_intron MGP_AJ_T0007379.1 MGP_AJ_G0006045.1 mouse_genomes_project 2 156874843 156874975 - Gm23925 lincRNA lincRNA MGP_AJ_T0056942.1 MGP_AJ_G0026310.1 mouse_genomes_project 2 117479738 117542304 + MGP_AJ_P0056942 Rtf1 protein_coding protein_coding MGP_AJ_T0056943.1 MGP_AJ_G0026310.1 mouse_genomes_project 2 117479767 117497269 + Rtf1 protein_coding processed_transcript MGP_AJ_T0056944.1 MGP_AJ_G0026310.1 mouse_genomes_project 2 117479898 117542300 + MGP_AJ_P0056944 Rtf1 protein_coding unknown_likely_coding MGP_AJ_T0056945.1 MGP_AJ_G0026310.1 mouse_genomes_project 2 117515850 117517110 + Rtf1 protein_coding retained_intron MGP_AJ_T0056946.1 MGP_AJ_G0026310.1 mouse_genomes_project 2 117532605 117533568 + Rtf1 protein_coding retained_intron MGP_AJ_T0004159.1 MGP_AJ_G0003674.1 mouse_genomes_project 2 162701569 162720533 + A730032A03Rik antisense antisense MGP_AJ_T0004160.1 MGP_AJ_G0003674.1 mouse_genomes_project 2 162716735 162720533 + A730032A03Rik antisense antisense MGP_AJ_T0101015.1 MGP_AJ_G0038981.1 mouse_genomes_project 2 23659650 23659789 - Snhg7 snoRNA snoRNA MGP_AJ_T0056669.1 MGP_AJ_G0026217.1 mouse_genomes_project 2 108939275 108940217 + MGP_AJ_P0056669 protein_coding protein_coding MGP_AJ_T0101769.1 MGP_AJ_G0039691.1 mouse_genomes_project 2 72236452 72237058 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0099758.1 MGP_AJ_G0037724.1 mouse_genomes_project 2 35703952 35704060 + Gm25081 snRNA snRNA MGP_AJ_T0052363.1 MGP_AJ_G0025290.1 mouse_genomes_project 2 991749 1140940 + Frmd4a protein_coding processed_transcript MGP_AJ_T0052364.1 MGP_AJ_G0025290.1 mouse_genomes_project 2 991766 995937 + Frmd4a protein_coding retained_intron MGP_AJ_T0052365.1 MGP_AJ_G0025290.1 mouse_genomes_project 2 991776 1589764 + MGP_AJ_P0052365 Frmd4a protein_coding protein_coding MGP_AJ_T0052366.1 MGP_AJ_G0025290.1 mouse_genomes_project 2 1126956 1145359 + Frmd4a protein_coding processed_transcript MGP_AJ_T0052367.1 MGP_AJ_G0025290.1 mouse_genomes_project 2 1126965 1589665 + MGP_AJ_P0052367 Frmd4a protein_coding protein_coding MGP_AJ_T0052368.1 MGP_AJ_G0025290.1 mouse_genomes_project 2 1270899 1546987 + MGP_AJ_P0052368 Frmd4a protein_coding protein_coding MGP_AJ_T0052369.1 MGP_AJ_G0025290.1 mouse_genomes_project 2 1271262 1510383 + Frmd4a protein_coding retained_intron MGP_AJ_T0052370.1 MGP_AJ_G0025290.1 mouse_genomes_project 2 1271380 1531749 + MGP_AJ_P0052370 Frmd4a protein_coding nonsense_mediated_decay MGP_AJ_T0052371.1 MGP_AJ_G0025290.1 mouse_genomes_project 2 1300985 1569929 + MGP_AJ_P0052371 Frmd4a protein_coding protein_coding MGP_AJ_T0052372.1 MGP_AJ_G0025290.1 mouse_genomes_project 2 1361920 1501284 + MGP_AJ_P0052372 Frmd4a protein_coding protein_coding MGP_AJ_T0052373.1 MGP_AJ_G0025290.1 mouse_genomes_project 2 1361922 1405387 + Frmd4a protein_coding retained_intron MGP_AJ_T0052374.1 MGP_AJ_G0025290.1 mouse_genomes_project 2 1373698 1403239 + Frmd4a protein_coding retained_intron MGP_AJ_T0052375.1 MGP_AJ_G0025290.1 mouse_genomes_project 2 1373732 1509221 + Frmd4a protein_coding retained_intron MGP_AJ_T0052376.1 MGP_AJ_G0025290.1 mouse_genomes_project 2 1387087 1589768 + MGP_AJ_P0052376 Frmd4a protein_coding protein_coding MGP_AJ_T0052377.1 MGP_AJ_G0025290.1 mouse_genomes_project 2 1444924 1469898 + Frmd4a protein_coding retained_intron MGP_AJ_T0052378.1 MGP_AJ_G0025290.1 mouse_genomes_project 2 1531242 1573490 + Frmd4a protein_coding retained_intron MGP_AJ_T0052379.1 MGP_AJ_G0025290.1 mouse_genomes_project 2 1531263 1562726 + Frmd4a protein_coding retained_intron MGP_AJ_T0052380.1 MGP_AJ_G0025290.1 mouse_genomes_project 2 1540724 1569965 + MGP_AJ_P0052380 Frmd4a protein_coding nonsense_mediated_decay MGP_AJ_T0013415.1 MGP_AJ_G0011510.1 mouse_genomes_project 2 2269604 2269829 + processed_pseudogene processed_pseudogene MGP_AJ_T0102475.1 MGP_AJ_G0040217.1 mouse_genomes_project 2 83043816 83044542 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0055976.1 MGP_AJ_G0026087.1 mouse_genomes_project 2 87820490 87823570 - MGP_AJ_P0055976 protein_coding protein_coding MGP_AJ_T0101019.1 MGP_AJ_G0038985.1 mouse_genomes_project 2 23939749 23939823 + Gm22879 snoRNA snoRNA MGP_AJ_T0003914.1 MGP_AJ_G0003497.1 mouse_genomes_project 2 18009987 18010931 + Gm13375 antisense antisense MGP_AJ_T0057400.1 MGP_AJ_G0026393.1 mouse_genomes_project 2 123515212 123580296 - MGP_AJ_P0057400 Cep152 protein_coding unknown_likely_coding MGP_AJ_T0057401.1 MGP_AJ_G0026393.1 mouse_genomes_project 2 123515217 123580436 - MGP_AJ_P0057401 Cep152 protein_coding protein_coding MGP_AJ_T0013418.1 MGP_AJ_G0011513.1 mouse_genomes_project 2 5619532 5620079 + processed_pseudogene processed_pseudogene MGP_AJ_T0011515.1 MGP_AJ_G0009637.1 mouse_genomes_project 2 140440119 140440423 + Gm23179 misc_RNA misc_RNA MGP_AJ_T0054891.1 MGP_AJ_G0025732.1 mouse_genomes_project 2 56870157 57108396 + MGP_AJ_P0054891 Tanc1 protein_coding protein_coding MGP_AJ_T0054892.1 MGP_AJ_G0025732.1 mouse_genomes_project 2 56870188 56908027 + Tanc1 protein_coding retained_intron MGP_AJ_T0054893.1 MGP_AJ_G0025732.1 mouse_genomes_project 2 56888325 56905577 + Tanc1 protein_coding retained_intron MGP_AJ_T0054894.1 MGP_AJ_G0025732.1 mouse_genomes_project 2 56905382 57107964 + MGP_AJ_P0054894 Tanc1 protein_coding protein_coding MGP_AJ_T0054895.1 MGP_AJ_G0025732.1 mouse_genomes_project 2 56955036 57107972 + MGP_AJ_P0054895 Tanc1 protein_coding protein_coding MGP_AJ_T0054896.1 MGP_AJ_G0025732.1 mouse_genomes_project 2 56966925 56984946 + Tanc1 protein_coding processed_transcript MGP_AJ_T0054897.1 MGP_AJ_G0025732.1 mouse_genomes_project 2 57003642 57083380 + Tanc1 protein_coding retained_intron MGP_AJ_T0054898.1 MGP_AJ_G0025732.1 mouse_genomes_project 2 57030254 57033343 + Tanc1 protein_coding processed_transcript MGP_AJ_T0054899.1 MGP_AJ_G0025732.1 mouse_genomes_project 2 57040654 57046443 + Tanc1 protein_coding processed_transcript MGP_AJ_T0054900.1 MGP_AJ_G0025732.1 mouse_genomes_project 2 57067706 57071143 + Tanc1 protein_coding retained_intron MGP_AJ_T0054901.1 MGP_AJ_G0025732.1 mouse_genomes_project 2 57103986 57107962 + Tanc1 protein_coding retained_intron MGP_AJ_T0055018.1 MGP_AJ_G0025749.1 mouse_genomes_project 2 59973885 60003483 + MGP_AJ_P0055018 Gca protein_coding protein_coding MGP_AJ_T0055019.1 MGP_AJ_G0025749.1 mouse_genomes_project 2 59995921 60000020 + Gca protein_coding processed_transcript MGP_AJ_T0010437.1 MGP_AJ_G0008559.1 mouse_genomes_project 2 91901101 91901201 - Mir670 miRNA miRNA MGP_AJ_T0017826.1 MGP_AJ_G0015430.1 mouse_genomes_project 2 111143256 111153100 + Gm13965 processed_transcript processed_transcript MGP_AJ_T0055910.1 MGP_AJ_G0026042.1 mouse_genomes_project 2 86709743 86710679 - MGP_AJ_P0055910 Olfr1218 protein_coding protein_coding MGP_AJ_T0010330.1 MGP_AJ_G0008452.1 mouse_genomes_project 2 7488547 7488668 + Gm22072 miRNA miRNA MGP_AJ_T0056430.1 MGP_AJ_G0026161.1 mouse_genomes_project 2 100653735 100707839 - MGP_AJ_P0056430 Pdhx protein_coding protein_coding MGP_AJ_T0056431.1 MGP_AJ_G0026161.1 mouse_genomes_project 2 100665954 100707661 - MGP_AJ_P0056431 Pdhx protein_coding protein_coding MGP_AJ_T0056432.1 MGP_AJ_G0026161.1 mouse_genomes_project 2 100673046 100707788 - MGP_AJ_P0056432 Pdhx protein_coding protein_coding MGP_AJ_T0054589.1 MGP_AJ_G0025681.1 mouse_genomes_project 2 35922774 35940512 - MGP_AJ_P0054589 Nr5a1 protein_coding unknown_likely_coding MGP_AJ_T0054590.1 MGP_AJ_G0025681.1 mouse_genomes_project 2 35930080 35939929 - Nr5a1 protein_coding retained_intron MGP_AJ_T0013448.1 MGP_AJ_G0011543.1 mouse_genomes_project 2 15813607 15814801 + processed_pseudogene processed_pseudogene MGP_AJ_T0057921.1 MGP_AJ_G0026515.1 mouse_genomes_project 2 131604919 131616052 + MGP_AJ_P0057921 Bmp2 protein_coding protein_coding MGP_AJ_T0004006.1 MGP_AJ_G0003565.1 mouse_genomes_project 2 69565099 69573349 - Rapgef4os2 antisense antisense MGP_AJ_T0058615.1 MGP_AJ_G0026704.1 mouse_genomes_project 2 154067327 154090453 + MGP_AJ_P0058615 Myh7b protein_coding protein_coding MGP_AJ_T0058616.1 MGP_AJ_G0026704.1 mouse_genomes_project 2 154085205 154086530 + Myh7b protein_coding processed_transcript MGP_AJ_T0058617.1 MGP_AJ_G0026704.1 mouse_genomes_project 2 154089596 154090349 + Myh7b protein_coding retained_intron MGP_AJ_T0098648.1 MGP_AJ_G0036632.1 mouse_genomes_project 2 59110390 59110507 + Gm25966 rRNA rRNA MGP_AJ_T0056276.1 MGP_AJ_G0026133.1 mouse_genomes_project 2 90602743 90686721 - MGP_AJ_P0056276 Prdm11 protein_coding protein_coding MGP_AJ_T0056277.1 MGP_AJ_G0026133.1 mouse_genomes_project 2 90612514 90687294 - MGP_AJ_P0056277 Prdm11 protein_coding protein_coding MGP_AJ_T0056278.1 MGP_AJ_G0026133.1 mouse_genomes_project 2 90622331 90655247 - MGP_AJ_P0056278 Prdm11 protein_coding protein_coding MGP_AJ_T0056279.1 MGP_AJ_G0026133.1 mouse_genomes_project 2 90648710 90654456 - Prdm11 protein_coding processed_transcript MGP_AJ_T0056280.1 MGP_AJ_G0026133.1 mouse_genomes_project 2 90653173 90687317 - MGP_AJ_P0056280 Prdm11 protein_coding protein_coding MGP_AJ_T0054500.1 MGP_AJ_G0025646.1 mouse_genomes_project 2 33741960 33742890 + MGP_AJ_P0054500 Olfr344 protein_coding protein_coding MGP_AJ_T0052516.1 MGP_AJ_G0025315.1 mouse_genomes_project 2 7099405 7110789 + Kin protein_coding processed_transcript MGP_AJ_T0052517.1 MGP_AJ_G0025315.1 mouse_genomes_project 2 7099436 7111776 + MGP_AJ_P0052517 Kin protein_coding protein_coding MGP_AJ_T0052518.1 MGP_AJ_G0025315.1 mouse_genomes_project 2 7109266 7111149 + Kin protein_coding processed_transcript MGP_AJ_T0017762.1 MGP_AJ_G0015390.1 mouse_genomes_project 2 33404543 33406452 + Gm13429 processed_transcript processed_transcript MGP_AJ_T0017763.1 MGP_AJ_G0015390.1 mouse_genomes_project 2 33405014 33415087 + Gm13429 processed_transcript processed_transcript MGP_AJ_T0017764.1 MGP_AJ_G0015390.1 mouse_genomes_project 2 33412955 33415086 + Gm13429 processed_transcript processed_transcript MGP_AJ_T0053820.1 MGP_AJ_G0025543.1 mouse_genomes_project 2 27430309 27444728 - MGP_AJ_P0053820 Sh3glb2 protein_coding protein_coding MGP_AJ_T0053821.1 MGP_AJ_G0025543.1 mouse_genomes_project 2 27430309 27444804 - MGP_AJ_P0053821 Sh3glb2 protein_coding protein_coding MGP_AJ_T0053822.1 MGP_AJ_G0025543.1 mouse_genomes_project 2 27430311 27444777 - MGP_AJ_P0053822 Sh3glb2 protein_coding protein_coding MGP_AJ_T0053823.1 MGP_AJ_G0025543.1 mouse_genomes_project 2 27430311 27444753 - MGP_AJ_P0053823 Sh3glb2 protein_coding protein_coding MGP_AJ_T0053824.1 MGP_AJ_G0025543.1 mouse_genomes_project 2 27430311 27444820 - MGP_AJ_P0053824 Sh3glb2 protein_coding protein_coding MGP_AJ_T0053825.1 MGP_AJ_G0025543.1 mouse_genomes_project 2 27430635 27444793 - Sh3glb2 protein_coding retained_intron MGP_AJ_T0053826.1 MGP_AJ_G0025543.1 mouse_genomes_project 2 27430641 27431602 - Sh3glb2 protein_coding processed_transcript MGP_AJ_T0053827.1 MGP_AJ_G0025543.1 mouse_genomes_project 2 27431320 27444825 - Sh3glb2 protein_coding processed_transcript MGP_AJ_T0053828.1 MGP_AJ_G0025543.1 mouse_genomes_project 2 27431386 27433157 - Sh3glb2 protein_coding retained_intron MGP_AJ_T0053829.1 MGP_AJ_G0025543.1 mouse_genomes_project 2 27431608 27433088 - Sh3glb2 protein_coding retained_intron MGP_AJ_T0053830.1 MGP_AJ_G0025543.1 mouse_genomes_project 2 27433568 27440853 - Sh3glb2 protein_coding retained_intron MGP_AJ_T0053831.1 MGP_AJ_G0025543.1 mouse_genomes_project 2 27433590 27440368 - Sh3glb2 protein_coding retained_intron MGP_AJ_T0053832.1 MGP_AJ_G0025543.1 mouse_genomes_project 2 27434983 27444733 - Sh3glb2 protein_coding processed_transcript MGP_AJ_T0053833.1 MGP_AJ_G0025543.1 mouse_genomes_project 2 27435240 27444748 - Sh3glb2 protein_coding retained_intron MGP_AJ_T0057406.1 MGP_AJ_G0026396.1 mouse_genomes_project 2 123687443 123734197 - MGP_AJ_P0057406 Secisbp2l protein_coding protein_coding MGP_AJ_T0057407.1 MGP_AJ_G0026396.1 mouse_genomes_project 2 123695433 123710988 - MGP_AJ_P0057407 Secisbp2l protein_coding protein_coding MGP_AJ_T0057408.1 MGP_AJ_G0026396.1 mouse_genomes_project 2 123701043 123702935 - Secisbp2l protein_coding retained_intron MGP_AJ_T0059571.1 MGP_AJ_G0026915.1 mouse_genomes_project 2 171248939 171258342 + MGP_AJ_P0059571 Tfap2c protein_coding protein_coding MGP_AJ_T0059572.1 MGP_AJ_G0026915.1 mouse_genomes_project 2 171249998 171258327 + Tfap2c protein_coding processed_transcript MGP_AJ_T0059573.1 MGP_AJ_G0026915.1 mouse_genomes_project 2 171250109 171257136 + Tfap2c protein_coding processed_transcript MGP_AJ_T0059574.1 MGP_AJ_G0026915.1 mouse_genomes_project 2 171250127 171258339 + MGP_AJ_P0059574 Tfap2c protein_coding protein_coding MGP_AJ_T0059575.1 MGP_AJ_G0026915.1 mouse_genomes_project 2 171250336 171258339 + MGP_AJ_P0059575 Tfap2c protein_coding protein_coding MGP_AJ_T0013555.1 MGP_AJ_G0011650.1 mouse_genomes_project 2 54748792 54749335 - processed_pseudogene processed_pseudogene MGP_AJ_T0013719.1 MGP_AJ_G0011814.1 mouse_genomes_project 2 109446445 109446601 - processed_pseudogene processed_pseudogene MGP_AJ_T0056000.1 MGP_AJ_G0026093.1 mouse_genomes_project 2 88388653 88422914 + MGP_AJ_P0056000 Agbl2 protein_coding protein_coding MGP_AJ_T0056001.1 MGP_AJ_G0026093.1 mouse_genomes_project 2 88388653 88440963 + MGP_AJ_P0056001 Agbl2 protein_coding nonsense_mediated_decay MGP_AJ_T0056002.1 MGP_AJ_G0026093.1 mouse_genomes_project 2 88388654 88416338 + MGP_AJ_P0056002 Agbl2 protein_coding protein_coding MGP_AJ_T0056003.1 MGP_AJ_G0026093.1 mouse_genomes_project 2 88388670 88421901 + MGP_AJ_P0056003 Agbl2 protein_coding protein_coding MGP_AJ_T0056004.1 MGP_AJ_G0026093.1 mouse_genomes_project 2 88389124 88419938 + MGP_AJ_P0056004 Agbl2 protein_coding protein_coding MGP_AJ_T0056005.1 MGP_AJ_G0026093.1 mouse_genomes_project 2 88389151 88436005 + Agbl2 protein_coding processed_transcript MGP_AJ_T0056006.1 MGP_AJ_G0026093.1 mouse_genomes_project 2 88389459 88421901 + MGP_AJ_P0056006 Agbl2 protein_coding protein_coding MGP_AJ_T0056007.1 MGP_AJ_G0026093.1 mouse_genomes_project 2 88389912 88421182 + MGP_AJ_P0056007 Agbl2 protein_coding unknown_likely_coding MGP_AJ_T0056008.1 MGP_AJ_G0026093.1 mouse_genomes_project 2 88389946 88403039 + Agbl2 protein_coding processed_transcript MGP_AJ_T0053582.1 MGP_AJ_G0025505.1 mouse_genomes_project 2 25662452 25674985 - MGP_AJ_P0053582 Gfi1b protein_coding protein_coding MGP_AJ_T0053583.1 MGP_AJ_G0025505.1 mouse_genomes_project 2 25662457 25674948 - MGP_AJ_P0053583 Gfi1b protein_coding protein_coding MGP_AJ_T0053584.1 MGP_AJ_G0025505.1 mouse_genomes_project 2 25667791 25668413 - Gfi1b protein_coding processed_transcript MGP_AJ_T0053585.1 MGP_AJ_G0025505.1 mouse_genomes_project 2 25667798 25674985 - Gfi1b protein_coding processed_transcript MGP_AJ_T0058100.1 MGP_AJ_G0026558.1 mouse_genomes_project 2 143875679 143920029 + MGP_AJ_P0058100 Rin2 protein_coding protein_coding MGP_AJ_T0058101.1 MGP_AJ_G0026558.1 mouse_genomes_project 2 143876913 143985791 + MGP_AJ_P0058101 Rin2 protein_coding protein_coding MGP_AJ_T0058102.1 MGP_AJ_G0026558.1 mouse_genomes_project 2 143877049 143985791 + MGP_AJ_P0058102 Rin2 protein_coding protein_coding MGP_AJ_T0058103.1 MGP_AJ_G0026558.1 mouse_genomes_project 2 143877095 143920431 + MGP_AJ_P0058103 Rin2 protein_coding nonsense_mediated_decay MGP_AJ_T0058104.1 MGP_AJ_G0026558.1 mouse_genomes_project 2 143919876 143942553 + Rin2 protein_coding processed_transcript MGP_AJ_T0058105.1 MGP_AJ_G0026558.1 mouse_genomes_project 2 143920015 143942822 + Rin2 protein_coding processed_transcript MGP_AJ_T0058106.1 MGP_AJ_G0026558.1 mouse_genomes_project 2 143960477 143977151 + Rin2 protein_coding processed_transcript MGP_AJ_T0017745.1 MGP_AJ_G0015379.1 mouse_genomes_project 2 24582648 24585585 + Gm13421 processed_transcript processed_transcript MGP_AJ_T0017746.1 MGP_AJ_G0015379.1 mouse_genomes_project 2 24582651 24585408 + Gm13421 processed_transcript processed_transcript MGP_AJ_T0013476.1 MGP_AJ_G0011571.1 mouse_genomes_project 2 25864683 25864807 - processed_pseudogene processed_pseudogene MGP_AJ_T0055330.1 MGP_AJ_G0025808.1 mouse_genomes_project 2 69811762 69822450 + MGP_AJ_P0055330 Cdca7 protein_coding protein_coding MGP_AJ_T0055331.1 MGP_AJ_G0025808.1 mouse_genomes_project 2 69811856 69818101 + MGP_AJ_P0055331 Cdca7 protein_coding protein_coding MGP_AJ_T0055332.1 MGP_AJ_G0025808.1 mouse_genomes_project 2 69811993 69817464 + Cdca7 protein_coding processed_transcript MGP_AJ_T0055333.1 MGP_AJ_G0025808.1 mouse_genomes_project 2 69819167 69820347 + Cdca7 protein_coding processed_transcript MGP_AJ_T0055334.1 MGP_AJ_G0025808.1 mouse_genomes_project 2 69820710 69821770 + Cdca7 protein_coding processed_transcript MGP_AJ_T0052352.1 MGP_AJ_G0025287.1 mouse_genomes_project 2 463689 474574 + MGP_AJ_P0052352 Cdnf protein_coding unknown_likely_coding MGP_AJ_T0052353.1 MGP_AJ_G0025287.1 mouse_genomes_project 2 463704 474407 + Cdnf protein_coding processed_transcript MGP_AJ_T0052354.1 MGP_AJ_G0025287.1 mouse_genomes_project 2 463739 476961 + MGP_AJ_P0052354 Cdnf protein_coding protein_coding MGP_AJ_T0052355.1 MGP_AJ_G0025287.1 mouse_genomes_project 2 464558 474485 + Cdnf protein_coding processed_transcript MGP_AJ_T0013503.1 MGP_AJ_G0011598.1 mouse_genomes_project 2 36171251 36171838 + processed_pseudogene processed_pseudogene MGP_AJ_T0017805.1 MGP_AJ_G0015420.1 mouse_genomes_project 2 90042640 90066037 + D930015M05Rik processed_transcript processed_transcript MGP_AJ_T0059491.1 MGP_AJ_G0026893.1 mouse_genomes_project 2 166894282 166914890 - MGP_AJ_P0059491 Kcng1 protein_coding protein_coding MGP_AJ_T0059492.1 MGP_AJ_G0026893.1 mouse_genomes_project 2 166895863 166903325 - MGP_AJ_P0059492 Kcng1 protein_coding protein_coding MGP_AJ_T0059493.1 MGP_AJ_G0026893.1 mouse_genomes_project 2 166903092 166915494 - MGP_AJ_P0059493 Kcng1 protein_coding protein_coding MGP_AJ_T0056189.1 MGP_AJ_G0026118.1 mouse_genomes_project 2 89351320 89543999 + MGP_AJ_P0056189 Ambra1 protein_coding protein_coding MGP_AJ_T0056190.1 MGP_AJ_G0026118.1 mouse_genomes_project 2 89351324 89543998 + MGP_AJ_P0056190 Ambra1 protein_coding protein_coding MGP_AJ_T0056191.1 MGP_AJ_G0026118.1 mouse_genomes_project 2 89351368 89433640 + Ambra1 protein_coding processed_transcript MGP_AJ_T0056192.1 MGP_AJ_G0026118.1 mouse_genomes_project 2 89351368 89433640 + Ambra1 protein_coding processed_transcript MGP_AJ_T0056193.1 MGP_AJ_G0026118.1 mouse_genomes_project 2 89351370 89543998 + MGP_AJ_P0056193 Ambra1 protein_coding protein_coding MGP_AJ_T0056194.1 MGP_AJ_G0026118.1 mouse_genomes_project 2 89351411 89543999 + MGP_AJ_P0056194 Ambra1 protein_coding protein_coding MGP_AJ_T0056195.1 MGP_AJ_G0026118.1 mouse_genomes_project 2 89387939 89543999 + MGP_AJ_P0056195 Ambra1 protein_coding protein_coding MGP_AJ_T0056196.1 MGP_AJ_G0026118.1 mouse_genomes_project 2 89394682 89446831 + Ambra1 protein_coding processed_transcript MGP_AJ_T0056197.1 MGP_AJ_G0026118.1 mouse_genomes_project 2 89434338 89447664 + Ambra1 protein_coding processed_transcript MGP_AJ_T0101095.1 MGP_AJ_G0039061.1 mouse_genomes_project 2 163817729 163817860 - Gm25569 snoRNA snoRNA MGP_AJ_T0010388.1 MGP_AJ_G0008510.1 mouse_genomes_project 2 26544144 26544224 - Mir133c miRNA miRNA MGP_AJ_T0013481.1 MGP_AJ_G0011576.1 mouse_genomes_project 2 29121265 29122671 + processed_pseudogene processed_pseudogene MGP_AJ_T0013855.1 MGP_AJ_G0011950.1 mouse_genomes_project 2 159368559 159369417 + processed_pseudogene processed_pseudogene MGP_AJ_T0003988.1 MGP_AJ_G0003552.1 mouse_genomes_project 2 62802936 62806261 + Gm13595 antisense antisense MGP_AJ_T0059120.1 MGP_AJ_G0026801.1 mouse_genomes_project 2 162578156 162590264 - Tomm34 protein_coding retained_intron MGP_AJ_T0059121.1 MGP_AJ_G0026801.1 mouse_genomes_project 2 162578156 162595692 - MGP_AJ_P0059121 Tomm34 protein_coding protein_coding MGP_AJ_T0059122.1 MGP_AJ_G0026801.1 mouse_genomes_project 2 162578156 162595625 - MGP_AJ_P0059122 Tomm34 protein_coding protein_coding MGP_AJ_T0011527.1 MGP_AJ_G0009649.1 mouse_genomes_project 2 173030120 173030245 + Gm27849 misc_RNA misc_RNA MGP_AJ_T0101074.1 MGP_AJ_G0039040.1 mouse_genomes_project 2 146278141 146278454 + Gm24221 snoRNA snoRNA MGP_AJ_T0059077.1 MGP_AJ_G0026788.1 mouse_genomes_project 2 161987267 162004013 + MGP_AJ_P0059077 Gdap1l1 protein_coding protein_coding MGP_AJ_T0059078.1 MGP_AJ_G0026788.1 mouse_genomes_project 2 161987269 162003664 + MGP_AJ_P0059078 Gdap1l1 protein_coding protein_coding MGP_AJ_T0059079.1 MGP_AJ_G0026788.1 mouse_genomes_project 2 161987269 162002644 + MGP_AJ_P0059079 Gdap1l1 protein_coding protein_coding MGP_AJ_T0059080.1 MGP_AJ_G0026788.1 mouse_genomes_project 2 161987324 162002486 + MGP_AJ_P0059080 Gdap1l1 protein_coding protein_coding MGP_AJ_T0055453.1 MGP_AJ_G0025839.1 mouse_genomes_project 2 73390639 73407554 - MGP_AJ_P0055453 Pde11a protein_coding protein_coding MGP_AJ_T0055454.1 MGP_AJ_G0025839.1 mouse_genomes_project 2 73391407 73747808 - MGP_AJ_P0055454 Pde11a protein_coding protein_coding MGP_AJ_T0055455.1 MGP_AJ_G0025839.1 mouse_genomes_project 2 73429055 73628791 - MGP_AJ_P0055455 Pde11a protein_coding protein_coding MGP_AJ_T0058174.1 MGP_AJ_G0026576.1 mouse_genomes_project 2 146873505 146878585 + MGP_AJ_P0058174 Cstl1 protein_coding protein_coding MGP_AJ_T0058175.1 MGP_AJ_G0026576.1 mouse_genomes_project 2 146873508 146878530 + MGP_AJ_P0058175 Cstl1 protein_coding protein_coding MGP_AJ_T0058176.1 MGP_AJ_G0026576.1 mouse_genomes_project 2 146873543 146878530 + MGP_AJ_P0058176 Cstl1 protein_coding protein_coding MGP_AJ_T0053857.1 MGP_AJ_G0025546.1 mouse_genomes_project 2 27486355 27502607 - MGP_AJ_P0053857 Crat protein_coding protein_coding MGP_AJ_T0053858.1 MGP_AJ_G0025546.1 mouse_genomes_project 2 27486360 27492565 - Crat protein_coding processed_transcript MGP_AJ_T0053859.1 MGP_AJ_G0025546.1 mouse_genomes_project 2 27486985 27502649 - MGP_AJ_P0053859 Crat protein_coding protein_coding MGP_AJ_T0053860.1 MGP_AJ_G0025546.1 mouse_genomes_project 2 27488382 27491173 - MGP_AJ_P0053860 Crat protein_coding protein_coding MGP_AJ_T0053861.1 MGP_AJ_G0025546.1 mouse_genomes_project 2 27488462 27502360 - MGP_AJ_P0053861 Crat protein_coding protein_coding MGP_AJ_T0053862.1 MGP_AJ_G0025546.1 mouse_genomes_project 2 27488521 27490846 - MGP_AJ_P0053862 Crat protein_coding protein_coding MGP_AJ_T0053863.1 MGP_AJ_G0025546.1 mouse_genomes_project 2 27493955 27502144 - MGP_AJ_P0053863 Crat protein_coding protein_coding MGP_AJ_T0053864.1 MGP_AJ_G0025546.1 mouse_genomes_project 2 27494000 27502384 - MGP_AJ_P0053864 Crat protein_coding nonsense_mediated_decay MGP_AJ_T0053865.1 MGP_AJ_G0025546.1 mouse_genomes_project 2 27499876 27501175 - Crat protein_coding processed_transcript MGP_AJ_T0053866.1 MGP_AJ_G0025546.1 mouse_genomes_project 2 27499972 27502354 - MGP_AJ_P0053866 Crat protein_coding protein_coding MGP_AJ_T0053867.1 MGP_AJ_G0025546.1 mouse_genomes_project 2 27499993 27502169 - MGP_AJ_P0053867 Crat protein_coding protein_coding MGP_AJ_T0053868.1 MGP_AJ_G0025546.1 mouse_genomes_project 2 27500895 27502436 - Crat protein_coding processed_transcript MGP_AJ_T0053869.1 MGP_AJ_G0025546.1 mouse_genomes_project 2 27501430 27502243 - MGP_AJ_P0053869 Crat protein_coding protein_coding MGP_AJ_T0056922.1 MGP_AJ_G0026303.1 mouse_genomes_project 2 117126795 117129932 + MGP_AJ_P0056922 Chac1 protein_coding protein_coding MGP_AJ_T0055456.1 MGP_AJ_G0025840.1 mouse_genomes_project 2 73763706 73770281 - MGP_AJ_P0055456 Cyct protein_coding protein_coding MGP_AJ_T0058031.1 MGP_AJ_G0026542.1 mouse_genomes_project 2 141989803 142017630 + MGP_AJ_P0058031 Dstn protein_coding protein_coding MGP_AJ_T0054820.1 MGP_AJ_G0025715.1 mouse_genomes_project 2 50538175 50570703 + Arl6ip6 protein_coding processed_transcript MGP_AJ_T0054821.1 MGP_AJ_G0025715.1 mouse_genomes_project 2 50538537 50572387 + MGP_AJ_P0054821 Arl6ip6 protein_coding protein_coding MGP_AJ_T0057374.1 MGP_AJ_G0026385.1 mouse_genomes_project 2 123014976 123035448 + MGP_AJ_P0057374 Slc24a5 protein_coding protein_coding MGP_AJ_T0057375.1 MGP_AJ_G0026385.1 mouse_genomes_project 2 123016095 123029997 + Slc24a5 protein_coding processed_transcript MGP_AJ_T0057376.1 MGP_AJ_G0026385.1 mouse_genomes_project 2 123027205 123029850 + Slc24a5 protein_coding retained_intron MGP_AJ_T0058825.1 MGP_AJ_G0026735.1 mouse_genomes_project 2 155348986 155350317 - MGP_AJ_P0058825 4930518I15Rik protein_coding protein_coding MGP_AJ_T0011489.1 MGP_AJ_G0009611.1 mouse_genomes_project 2 18239787 18239964 - Gm23007 misc_RNA misc_RNA MGP_AJ_T0052984.1 MGP_AJ_G0025393.1 mouse_genomes_project 2 21928958 21929940 - MGP_AJ_P0052984 Mrpl41 protein_coding protein_coding MGP_AJ_T0052985.1 MGP_AJ_G0025393.1 mouse_genomes_project 2 21929336 21929831 - MGP_AJ_P0052985 Mrpl41 protein_coding protein_coding MGP_AJ_T0017876.1 MGP_AJ_G0015451.1 mouse_genomes_project 2 137366453 137780148 - processed_transcript processed_transcript MGP_AJ_T0013427.1 MGP_AJ_G0011522.1 mouse_genomes_project 2 9505194 9505594 - processed_pseudogene processed_pseudogene MGP_AJ_T0056730.1 MGP_AJ_G0026256.1 mouse_genomes_project 2 111028047 111039655 + MGP_AJ_P0056730 Tmco5b protein_coding protein_coding MGP_AJ_T0017829.1 MGP_AJ_G0015432.1 mouse_genomes_project 2 111755347 111769788 + A530058N18Rik processed_transcript antisense MGP_AJ_T0017830.1 MGP_AJ_G0015432.1 mouse_genomes_project 2 111755455 111774089 + A530058N18Rik processed_transcript antisense MGP_AJ_T0017831.1 MGP_AJ_G0015432.1 mouse_genomes_project 2 111755456 111773379 + A530058N18Rik processed_transcript antisense MGP_AJ_T0017832.1 MGP_AJ_G0015432.1 mouse_genomes_project 2 111755458 111773902 + A530058N18Rik processed_transcript antisense MGP_AJ_T0017833.1 MGP_AJ_G0015432.1 mouse_genomes_project 2 111755471 111762413 + A530058N18Rik processed_transcript retained_intron MGP_AJ_T0017834.1 MGP_AJ_G0015432.1 mouse_genomes_project 2 111755489 111759255 + A530058N18Rik processed_transcript antisense MGP_AJ_T0017835.1 MGP_AJ_G0015432.1 mouse_genomes_project 2 111755490 111773247 + A530058N18Rik processed_transcript antisense MGP_AJ_T0017915.1 MGP_AJ_G0015470.1 mouse_genomes_project 2 170647588 170653441 - 1700028P15Rik processed_transcript lincRNA MGP_AJ_T0017916.1 MGP_AJ_G0015470.1 mouse_genomes_project 2 170648895 170652774 - 1700028P15Rik processed_transcript lincRNA MGP_AJ_T0017917.1 MGP_AJ_G0015470.1 mouse_genomes_project 2 170648896 170653466 - 1700028P15Rik processed_transcript retained_intron MGP_AJ_T0007196.1 MGP_AJ_G0005896.1 mouse_genomes_project 2 42641400 42689423 + Gm13479 lincRNA lincRNA MGP_AJ_T0058460.1 MGP_AJ_G0026665.1 mouse_genomes_project 2 152178440 152192683 - MGP_AJ_P0058460 Sun5 protein_coding protein_coding MGP_AJ_T0058461.1 MGP_AJ_G0026665.1 mouse_genomes_project 2 152183036 152192683 - Sun5 protein_coding processed_transcript MGP_AJ_T0058462.1 MGP_AJ_G0026665.1 mouse_genomes_project 2 152186979 152192683 - Sun5 protein_coding processed_transcript MGP_AJ_T0013744.1 MGP_AJ_G0011839.1 mouse_genomes_project 2 120343826 120344419 - processed_pseudogene processed_pseudogene MGP_AJ_T0056184.1 MGP_AJ_G0026117.1 mouse_genomes_project 2 89331500 89332976 + MGP_AJ_P0056184 Harbi1 protein_coding protein_coding MGP_AJ_T0056185.1 MGP_AJ_G0026117.1 mouse_genomes_project 2 89331501 89333374 + MGP_AJ_P0056185 Harbi1 protein_coding protein_coding MGP_AJ_T0056186.1 MGP_AJ_G0026117.1 mouse_genomes_project 2 89331565 89336079 + MGP_AJ_P0056186 Harbi1 protein_coding protein_coding MGP_AJ_T0056187.1 MGP_AJ_G0026117.1 mouse_genomes_project 2 89331570 89342195 + MGP_AJ_P0056187 Harbi1 protein_coding protein_coding MGP_AJ_T0056188.1 MGP_AJ_G0026117.1 mouse_genomes_project 2 89332843 89339937 + MGP_AJ_P0056188 Harbi1 protein_coding protein_coding MGP_AJ_T0011495.1 MGP_AJ_G0009617.1 mouse_genomes_project 2 42389648 42389779 + Gm27761 misc_RNA misc_RNA MGP_AJ_T0098438.1 MGP_AJ_G0036422.1 mouse_genomes_project 2 88524080 88524353 + pseudogene pseudogene MGP_AJ_T0059208.1 MGP_AJ_G0026839.1 mouse_genomes_project 2 163315745 163318326 - MGP_AJ_P0059208 Tnnc2 protein_coding protein_coding MGP_AJ_T0059209.1 MGP_AJ_G0026839.1 mouse_genomes_project 2 163316528 163318552 - Tnnc2 protein_coding processed_transcript MGP_AJ_T0013822.1 MGP_AJ_G0011917.1 mouse_genomes_project 2 150078561 150079700 - processed_pseudogene processed_pseudogene MGP_AJ_T0052650.1 MGP_AJ_G0025332.1 mouse_genomes_project 2 10362518 10578510 - MGP_AJ_P0052650 Cubn protein_coding protein_coding MGP_AJ_T0052651.1 MGP_AJ_G0025332.1 mouse_genomes_project 2 10508870 10542608 - Cubn protein_coding retained_intron MGP_AJ_T0052652.1 MGP_AJ_G0025332.1 mouse_genomes_project 2 10543620 10546461 - Cubn protein_coding retained_intron MGP_AJ_T0099782.1 MGP_AJ_G0037748.1 mouse_genomes_project 2 120260691 120260843 - Gm24409 snRNA snRNA MGP_AJ_T0056963.1 MGP_AJ_G0026314.1 mouse_genomes_project 2 117606894 117627255 + MGP_AJ_P0056963 Tyro3 protein_coding protein_coding MGP_AJ_T0056964.1 MGP_AJ_G0026314.1 mouse_genomes_project 2 117608390 117614810 + Tyro3 protein_coding processed_transcript MGP_AJ_T0056965.1 MGP_AJ_G0026314.1 mouse_genomes_project 2 117608478 117612504 + Tyro3 protein_coding processed_transcript MGP_AJ_T0056966.1 MGP_AJ_G0026314.1 mouse_genomes_project 2 117608665 117627255 + MGP_AJ_P0056966 Tyro3 protein_coding protein_coding MGP_AJ_T0056967.1 MGP_AJ_G0026314.1 mouse_genomes_project 2 117610264 117612462 + Tyro3 protein_coding processed_transcript MGP_AJ_T0056968.1 MGP_AJ_G0026314.1 mouse_genomes_project 2 117612255 117617145 + Tyro3 protein_coding retained_intron MGP_AJ_T0056969.1 MGP_AJ_G0026314.1 mouse_genomes_project 2 117618361 117627242 + Tyro3 protein_coding retained_intron MGP_AJ_T0056970.1 MGP_AJ_G0026314.1 mouse_genomes_project 2 117619995 117621541 + Tyro3 protein_coding retained_intron MGP_AJ_T0058329.1 MGP_AJ_G0026623.1 mouse_genomes_project 2 150656500 150664423 - MGP_AJ_P0058329 Nrsn2 protein_coding protein_coding MGP_AJ_T0013723.1 MGP_AJ_G0011818.1 mouse_genomes_project 2 109846912 109862154 - processed_pseudogene processed_pseudogene MGP_AJ_T0098437.1 MGP_AJ_G0036421.1 mouse_genomes_project 2 26807242 26807573 - pseudogene pseudogene MGP_AJ_T0055847.1 MGP_AJ_G0025986.1 mouse_genomes_project 2 85189834 85190761 - MGP_AJ_P0055847 Olfr1132 protein_coding protein_coding MGP_AJ_T0056790.1 MGP_AJ_G0026270.1 mouse_genomes_project 2 115011271 115021752 + Fam98b protein_coding retained_intron MGP_AJ_T0056791.1 MGP_AJ_G0026270.1 mouse_genomes_project 2 115011271 115035473 + MGP_AJ_P0056791 Fam98b protein_coding protein_coding MGP_AJ_T0056792.1 MGP_AJ_G0026270.1 mouse_genomes_project 2 115020290 115021750 + Fam98b protein_coding processed_transcript MGP_AJ_T0055104.1 MGP_AJ_G0025766.1 mouse_genomes_project 2 64834969 65082959 + B3galt1 protein_coding processed_transcript MGP_AJ_T0055105.1 MGP_AJ_G0025766.1 mouse_genomes_project 2 65020870 65392736 + MGP_AJ_P0055105 B3galt1 protein_coding protein_coding MGP_AJ_T0055106.1 MGP_AJ_G0025766.1 mouse_genomes_project 2 65379614 65395100 + MGP_AJ_P0055106 B3galt1 protein_coding protein_coding MGP_AJ_T0055107.1 MGP_AJ_G0025766.1 mouse_genomes_project 2 65392298 65397274 + MGP_AJ_P0055107 B3galt1 protein_coding protein_coding MGP_AJ_T0053165.1 MGP_AJ_G0025424.1 mouse_genomes_project 2 22440917 22446732 - BC029214 protein_coding processed_transcript MGP_AJ_T0053166.1 MGP_AJ_G0025424.1 mouse_genomes_project 2 22440917 22445980 - BC029214 protein_coding processed_transcript MGP_AJ_T0053173.1 MGP_AJ_G0025424.1 mouse_genomes_project 2 22445229 22446097 - BC029214 protein_coding processed_transcript MGP_AJ_T0053174.1 MGP_AJ_G0025424.1 mouse_genomes_project 2 22445261 22446874 - MGP_AJ_P0053174 BC029214 protein_coding protein_coding MGP_AJ_T0053175.1 MGP_AJ_G0025424.1 mouse_genomes_project 2 22445263 22446852 - BC029214 protein_coding processed_transcript MGP_AJ_T0053176.1 MGP_AJ_G0025424.1 mouse_genomes_project 2 22445264 22446059 - BC029214 protein_coding processed_transcript MGP_AJ_T0053177.1 MGP_AJ_G0025424.1 mouse_genomes_project 2 22445264 22446444 - BC029214 protein_coding processed_transcript MGP_AJ_T0053178.1 MGP_AJ_G0025424.1 mouse_genomes_project 2 22445310 22446788 - BC029214 protein_coding processed_transcript MGP_AJ_T0053179.1 MGP_AJ_G0025424.1 mouse_genomes_project 2 22445340 22446745 - BC029214 protein_coding processed_transcript MGP_AJ_T0053180.1 MGP_AJ_G0025424.1 mouse_genomes_project 2 22445594 22446811 - MGP_AJ_P0053180 BC029214 protein_coding protein_coding MGP_AJ_T0053181.1 MGP_AJ_G0025424.1 mouse_genomes_project 2 22445791 22446803 - BC029214 protein_coding processed_transcript MGP_AJ_T0053182.1 MGP_AJ_G0025424.1 mouse_genomes_project 2 22445807 22446707 - BC029214 protein_coding processed_transcript MGP_AJ_T0053183.1 MGP_AJ_G0025424.1 mouse_genomes_project 2 22446038 22446728 - BC029214 protein_coding processed_transcript MGP_AJ_T0010490.1 MGP_AJ_G0008612.1 mouse_genomes_project 2 179229667 179229744 + Mir1a-1 miRNA miRNA MGP_AJ_T0059567.1 MGP_AJ_G0026913.1 mouse_genomes_project 2 171145368 171154198 - MGP_AJ_P0059567 Gcnt7 protein_coding protein_coding MGP_AJ_T0059568.1 MGP_AJ_G0026913.1 mouse_genomes_project 2 171145369 171149814 - MGP_AJ_P0059568 Gcnt7 protein_coding protein_coding MGP_AJ_T0010340.1 MGP_AJ_G0008462.1 mouse_genomes_project 2 7492231 7492329 + Mir669l miRNA miRNA MGP_AJ_T0007133.1 MGP_AJ_G0005849.1 mouse_genomes_project 2 3244480 3245801 - Gm13383 lincRNA lincRNA MGP_AJ_T0013643.1 MGP_AJ_G0011738.1 mouse_genomes_project 2 84698614 84699284 + processed_pseudogene processed_pseudogene MGP_AJ_T0101036.1 MGP_AJ_G0039002.1 mouse_genomes_project 2 51424190 51424323 + Gm22298 snoRNA snoRNA MGP_AJ_T0013452.1 MGP_AJ_G0011547.1 mouse_genomes_project 2 16709122 16710474 + processed_pseudogene processed_pseudogene MGP_AJ_T0003954.1 MGP_AJ_G0003527.1 mouse_genomes_project 2 30338653 30342642 + Gm13528 antisense antisense MGP_AJ_T0052680.1 MGP_AJ_G0025341.1 mouse_genomes_project 2 11685255 11686778 + Cacnb2 protein_coding retained_intron MGP_AJ_T0052681.1 MGP_AJ_G0025341.1 mouse_genomes_project 2 11686470 12068587 + MGP_AJ_P0052681 Cacnb2 protein_coding protein_coding MGP_AJ_T0052682.1 MGP_AJ_G0025341.1 mouse_genomes_project 2 11687286 12042139 + Cacnb2 protein_coding retained_intron MGP_AJ_T0052684.1 MGP_AJ_G0025341.1 mouse_genomes_project 2 11822358 12068586 + Cacnb2 protein_coding processed_transcript MGP_AJ_T0052685.1 MGP_AJ_G0025341.1 mouse_genomes_project 2 11846244 12042973 + Cacnb2 protein_coding retained_intron MGP_AJ_T0052686.1 MGP_AJ_G0025341.1 mouse_genomes_project 2 11905765 12053442 + Cacnb2 protein_coding retained_intron MGP_AJ_T0052687.1 MGP_AJ_G0025341.1 mouse_genomes_project 2 11905831 12066863 + MGP_AJ_P0052687 Cacnb2 protein_coding protein_coding MGP_AJ_T0052688.1 MGP_AJ_G0025341.1 mouse_genomes_project 2 11956241 12053357 + Cacnb2 protein_coding retained_intron MGP_AJ_T0052689.1 MGP_AJ_G0025341.1 mouse_genomes_project 2 11956242 12053442 + Cacnb2 protein_coding retained_intron MGP_AJ_T0052690.1 MGP_AJ_G0025341.1 mouse_genomes_project 2 11956255 12066801 + MGP_AJ_P0052690 Cacnb2 protein_coding protein_coding MGP_AJ_T0052691.1 MGP_AJ_G0025341.1 mouse_genomes_project 2 11956577 12044949 + Cacnb2 protein_coding retained_intron MGP_AJ_T0052692.1 MGP_AJ_G0025341.1 mouse_genomes_project 2 11957007 11979432 + MGP_AJ_P0052692 Cacnb2 protein_coding protein_coding MGP_AJ_T0052693.1 MGP_AJ_G0025341.1 mouse_genomes_project 2 11957334 12046701 + Cacnb2 protein_coding retained_intron MGP_AJ_T0052694.1 MGP_AJ_G0025341.1 mouse_genomes_project 2 11957338 12067775 + Cacnb2 protein_coding retained_intron MGP_AJ_T0052695.1 MGP_AJ_G0025341.1 mouse_genomes_project 2 12042057 12062017 + MGP_AJ_P0052695 Cacnb2 protein_coding protein_coding MGP_AJ_T0052696.1 MGP_AJ_G0025341.1 mouse_genomes_project 2 12062753 12065055 + Cacnb2 protein_coding retained_intron MGP_AJ_T0004132.1 MGP_AJ_G0003652.1 mouse_genomes_project 2 151968308 151969906 - Dnmt3bos antisense antisense MGP_AJ_T0055936.1 MGP_AJ_G0026062.1 mouse_genomes_project 2 87152488 87153599 - MGP_AJ_P0055936 Olfr1243 protein_coding protein_coding MGP_AJ_T0055937.1 MGP_AJ_G0026062.1 mouse_genomes_project 2 87153247 87156251 - Olfr1243 protein_coding processed_transcript MGP_AJ_T0013851.1 MGP_AJ_G0011946.1 mouse_genomes_project 2 156921162 156921473 - processed_pseudogene processed_pseudogene MGP_AJ_T0058213.1 MGP_AJ_G0026595.1 mouse_genomes_project 2 148823404 148874044 - MGP_AJ_P0058213 Acss1 protein_coding protein_coding MGP_AJ_T0058214.1 MGP_AJ_G0026595.1 mouse_genomes_project 2 148833625 148843228 - Acss1 protein_coding processed_transcript MGP_AJ_T0058215.1 MGP_AJ_G0026595.1 mouse_genomes_project 2 148833705 148843226 - Acss1 protein_coding processed_transcript MGP_AJ_T0058216.1 MGP_AJ_G0026595.1 mouse_genomes_project 2 148843092 148874286 - Acss1 protein_coding processed_transcript MGP_AJ_T0058217.1 MGP_AJ_G0026595.1 mouse_genomes_project 2 148865386 148874000 - Acss1 protein_coding retained_intron MGP_AJ_T0007212.1 MGP_AJ_G0005910.1 mouse_genomes_project 2 52760598 52770132 + Gm14033 lincRNA lincRNA MGP_AJ_T0007213.1 MGP_AJ_G0005910.1 mouse_genomes_project 2 52760623 52782210 + Gm14033 lincRNA lincRNA MGP_AJ_T0017889.1 MGP_AJ_G0015459.1 mouse_genomes_project 2 155331199 155355169 - 5430405H02Rik processed_transcript antisense MGP_AJ_T0017890.1 MGP_AJ_G0015459.1 mouse_genomes_project 2 155339277 155355151 - 5430405H02Rik processed_transcript antisense MGP_AJ_T0017891.1 MGP_AJ_G0015459.1 mouse_genomes_project 2 155339277 155355100 - 5430405H02Rik processed_transcript antisense MGP_AJ_T0057605.1 MGP_AJ_G0026443.1 mouse_genomes_project 2 126971415 126972548 - MGP_AJ_P0057605 Gm10762 protein_coding protein_coding MGP_AJ_T0052653.1 MGP_AJ_G0025333.1 mouse_genomes_project 2 10595726 10631568 - MGP_AJ_P0052653 Trdmt1 protein_coding protein_coding MGP_AJ_T0052654.1 MGP_AJ_G0025333.1 mouse_genomes_project 2 10602824 10631550 - Trdmt1 protein_coding processed_transcript MGP_AJ_T0052655.1 MGP_AJ_G0025333.1 mouse_genomes_project 2 10608825 10631563 - MGP_AJ_P0052655 Trdmt1 protein_coding nonsense_mediated_decay MGP_AJ_T0058597.1 MGP_AJ_G0026702.1 mouse_genomes_project 2 153972181 154018346 + MGP_AJ_P0058597 Acss2 protein_coding protein_coding MGP_AJ_T0058598.1 MGP_AJ_G0026702.1 mouse_genomes_project 2 153972266 153979618 + Acss2 protein_coding retained_intron MGP_AJ_T0058599.1 MGP_AJ_G0026702.1 mouse_genomes_project 2 153972290 154041447 + MGP_AJ_P0058599 Acss2 protein_coding protein_coding MGP_AJ_T0058600.1 MGP_AJ_G0026702.1 mouse_genomes_project 2 153972302 154007987 + Acss2 protein_coding retained_intron MGP_AJ_T0058601.1 MGP_AJ_G0026702.1 mouse_genomes_project 2 153972340 154017680 + MGP_AJ_P0058601 Acss2 protein_coding protein_coding MGP_AJ_T0058602.1 MGP_AJ_G0026702.1 mouse_genomes_project 2 153972340 154017680 + MGP_AJ_P0058602 Acss2 protein_coding nonsense_mediated_decay MGP_AJ_T0058603.1 MGP_AJ_G0026702.1 mouse_genomes_project 2 154004820 154005458 + Acss2 protein_coding retained_intron MGP_AJ_T0058604.1 MGP_AJ_G0026702.1 mouse_genomes_project 2 154004831 154012964 + MGP_AJ_P0058604 Acss2 protein_coding protein_coding MGP_AJ_T0058608.1 MGP_AJ_G0026702.1 mouse_genomes_project 2 154024149 154040989 + Acss2 protein_coding processed_transcript MGP_AJ_T0058609.1 MGP_AJ_G0026702.1 mouse_genomes_project 2 154028535 154032654 + Acss2 protein_coding retained_intron MGP_AJ_T0010401.1 MGP_AJ_G0008523.1 mouse_genomes_project 2 29839688 29839825 - Mir8093 miRNA miRNA MGP_AJ_T0059043.1 MGP_AJ_G0026780.1 mouse_genomes_project 2 161478719 161507425 + L3mbtl1 protein_coding retained_intron MGP_AJ_T0059044.1 MGP_AJ_G0026780.1 mouse_genomes_project 2 161478721 161509926 + MGP_AJ_P0059044 L3mbtl1 protein_coding protein_coding MGP_AJ_T0059045.1 MGP_AJ_G0026780.1 mouse_genomes_project 2 161478722 161484098 + L3mbtl1 protein_coding processed_transcript MGP_AJ_T0059046.1 MGP_AJ_G0026780.1 mouse_genomes_project 2 161478722 161484170 + MGP_AJ_P0059046 L3mbtl1 protein_coding protein_coding MGP_AJ_T0059047.1 MGP_AJ_G0026780.1 mouse_genomes_project 2 161478747 161482456 + L3mbtl1 protein_coding processed_transcript MGP_AJ_T0059048.1 MGP_AJ_G0026780.1 mouse_genomes_project 2 161483215 161484748 + L3mbtl1 protein_coding processed_transcript MGP_AJ_T0059049.1 MGP_AJ_G0026780.1 mouse_genomes_project 2 161483215 161484748 + MGP_AJ_P0059049 L3mbtl1 protein_coding protein_coding MGP_AJ_T0013578.1 MGP_AJ_G0011673.1 mouse_genomes_project 2 63713365 63713737 - processed_pseudogene processed_pseudogene MGP_AJ_T0056561.1 MGP_AJ_G0026189.1 mouse_genomes_project 2 102895098 103055393 + MGP_AJ_P0056561 Them7 protein_coding protein_coding MGP_AJ_T0056562.1 MGP_AJ_G0026189.1 mouse_genomes_project 2 102895120 103054633 + Them7 protein_coding processed_transcript MGP_AJ_T0102521.1 MGP_AJ_G0040263.1 mouse_genomes_project 2 155381434 155409062 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0055751.1 MGP_AJ_G0025901.1 mouse_genomes_project 2 82810490 82811603 - MGP_AJ_P0055751 Olfr995 protein_coding protein_coding MGP_AJ_T0055873.1 MGP_AJ_G0026009.1 mouse_genomes_project 2 85600831 85601782 - MGP_AJ_P0055873 Olfr1163 protein_coding protein_coding MGP_AJ_T0055860.1 MGP_AJ_G0025997.1 mouse_genomes_project 2 85377510 85378696 + MGP_AJ_P0055860 Olfr1148 protein_coding protein_coding MGP_AJ_T0057427.1 MGP_AJ_G0026400.1 mouse_genomes_project 2 123981844 123983287 + Fgf7 protein_coding processed_transcript MGP_AJ_T0057428.1 MGP_AJ_G0026400.1 mouse_genomes_project 2 123981844 124040903 + MGP_AJ_P0057428 Fgf7 protein_coding protein_coding MGP_AJ_T0057429.1 MGP_AJ_G0026400.1 mouse_genomes_project 2 123982159 124040239 + MGP_AJ_P0057429 Fgf7 protein_coding protein_coding MGP_AJ_T0056071.1 MGP_AJ_G0026104.1 mouse_genomes_project 2 88748120 88793484 - MGP_AJ_P0056071 Madd protein_coding protein_coding MGP_AJ_T0056072.1 MGP_AJ_G0026104.1 mouse_genomes_project 2 88748120 88789949 - MGP_AJ_P0056072 Madd protein_coding protein_coding MGP_AJ_T0056073.1 MGP_AJ_G0026104.1 mouse_genomes_project 2 88748120 88794445 - MGP_AJ_P0056073 Madd protein_coding protein_coding MGP_AJ_T0056074.1 MGP_AJ_G0026104.1 mouse_genomes_project 2 88748120 88789945 - MGP_AJ_P0056074 Madd protein_coding protein_coding MGP_AJ_T0056075.1 MGP_AJ_G0026104.1 mouse_genomes_project 2 88748120 88794445 - MGP_AJ_P0056075 Madd protein_coding protein_coding MGP_AJ_T0056076.1 MGP_AJ_G0026104.1 mouse_genomes_project 2 88748120 88789954 - MGP_AJ_P0056076 Madd protein_coding protein_coding MGP_AJ_T0056077.1 MGP_AJ_G0026104.1 mouse_genomes_project 2 88748120 88793524 - MGP_AJ_P0056077 Madd protein_coding protein_coding MGP_AJ_T0056078.1 MGP_AJ_G0026104.1 mouse_genomes_project 2 88748120 88793525 - MGP_AJ_P0056078 Madd protein_coding protein_coding MGP_AJ_T0056079.1 MGP_AJ_G0026104.1 mouse_genomes_project 2 88748120 88789943 - MGP_AJ_P0056079 Madd protein_coding protein_coding MGP_AJ_T0056080.1 MGP_AJ_G0026104.1 mouse_genomes_project 2 88748120 88794445 - MGP_AJ_P0056080 Madd protein_coding protein_coding MGP_AJ_T0056081.1 MGP_AJ_G0026104.1 mouse_genomes_project 2 88748120 88794445 - MGP_AJ_P0056081 Madd protein_coding protein_coding MGP_AJ_T0056082.1 MGP_AJ_G0026104.1 mouse_genomes_project 2 88748120 88794445 - MGP_AJ_P0056082 Madd protein_coding protein_coding MGP_AJ_T0056083.1 MGP_AJ_G0026104.1 mouse_genomes_project 2 88748121 88794445 - Madd protein_coding processed_transcript MGP_AJ_T0056084.1 MGP_AJ_G0026104.1 mouse_genomes_project 2 88748121 88794445 - Madd protein_coding processed_transcript MGP_AJ_T0056085.1 MGP_AJ_G0026104.1 mouse_genomes_project 2 88748121 88794445 - Madd protein_coding processed_transcript MGP_AJ_T0056086.1 MGP_AJ_G0026104.1 mouse_genomes_project 2 88748121 88794445 - Madd protein_coding processed_transcript MGP_AJ_T0056087.1 MGP_AJ_G0026104.1 mouse_genomes_project 2 88748121 88794445 - Madd protein_coding processed_transcript MGP_AJ_T0056088.1 MGP_AJ_G0026104.1 mouse_genomes_project 2 88748121 88794445 - MGP_AJ_P0056088 Madd protein_coding protein_coding MGP_AJ_T0056089.1 MGP_AJ_G0026104.1 mouse_genomes_project 2 88749096 88750003 - Madd protein_coding retained_intron MGP_AJ_T0056090.1 MGP_AJ_G0026104.1 mouse_genomes_project 2 88753774 88765704 - Madd protein_coding retained_intron MGP_AJ_T0056091.1 MGP_AJ_G0026104.1 mouse_genomes_project 2 88754003 88763241 - Madd protein_coding retained_intron MGP_AJ_T0056092.1 MGP_AJ_G0026104.1 mouse_genomes_project 2 88762896 88765548 - Madd protein_coding retained_intron MGP_AJ_T0056093.1 MGP_AJ_G0026104.1 mouse_genomes_project 2 88766310 88771088 - Madd protein_coding retained_intron MGP_AJ_T0056094.1 MGP_AJ_G0026104.1 mouse_genomes_project 2 88771776 88793662 - Madd protein_coding retained_intron MGP_AJ_T0056095.1 MGP_AJ_G0026104.1 mouse_genomes_project 2 88772123 88793683 - MGP_AJ_P0056095 Madd protein_coding protein_coding MGP_AJ_T0056096.1 MGP_AJ_G0026104.1 mouse_genomes_project 2 88778531 88786464 - MGP_AJ_P0056096 Madd protein_coding protein_coding MGP_AJ_T0056097.1 MGP_AJ_G0026104.1 mouse_genomes_project 2 88788265 88794464 - Madd protein_coding retained_intron MGP_AJ_T0056098.1 MGP_AJ_G0026104.1 mouse_genomes_project 2 88789076 88793675 - Madd protein_coding processed_transcript MGP_AJ_T0013634.1 MGP_AJ_G0011729.1 mouse_genomes_project 2 81166843 81168096 - processed_pseudogene processed_pseudogene MGP_AJ_T0059718.1 MGP_AJ_G0026953.1 mouse_genomes_project 2 178952839 178997978 + MGP_AJ_P0059718 Osbpl2 protein_coding protein_coding MGP_AJ_T0059719.1 MGP_AJ_G0026953.1 mouse_genomes_project 2 178952868 178971264 + Osbpl2 protein_coding processed_transcript MGP_AJ_T0059720.1 MGP_AJ_G0026953.1 mouse_genomes_project 2 178952937 178994589 + Osbpl2 protein_coding retained_intron MGP_AJ_T0059721.1 MGP_AJ_G0026953.1 mouse_genomes_project 2 178983562 178985592 + Osbpl2 protein_coding retained_intron MGP_AJ_T0099747.1 MGP_AJ_G0037713.1 mouse_genomes_project 2 17304638 17304745 + Gm23970 snRNA snRNA MGP_AJ_T0057678.1 MGP_AJ_G0026462.1 mouse_genomes_project 2 128318225 128323463 - MGP_AJ_P0057678 Idh3b protein_coding protein_coding MGP_AJ_T0057679.1 MGP_AJ_G0026462.1 mouse_genomes_project 2 128318228 128319467 - MGP_AJ_P0057679 Idh3b protein_coding nonsense_mediated_decay MGP_AJ_T0057680.1 MGP_AJ_G0026462.1 mouse_genomes_project 2 128321060 128323350 - Idh3b protein_coding retained_intron MGP_AJ_T0057681.1 MGP_AJ_G0026462.1 mouse_genomes_project 2 128322578 128323331 - Idh3b protein_coding retained_intron MGP_AJ_T0013771.1 MGP_AJ_G0011866.1 mouse_genomes_project 2 131107902 131108268 - processed_pseudogene processed_pseudogene MGP_AJ_T0007150.1 MGP_AJ_G0005863.1 mouse_genomes_project 2 14230273 14234018 - Gm13322 lincRNA lincRNA MGP_AJ_T0053917.1 MGP_AJ_G0025554.1 mouse_genomes_project 2 27991135 28004953 - MGP_AJ_P0053917 Ptges protein_coding protein_coding MGP_AJ_T0053918.1 MGP_AJ_G0025554.1 mouse_genomes_project 2 27993946 28003450 - Ptges protein_coding processed_transcript MGP_AJ_T0053919.1 MGP_AJ_G0025554.1 mouse_genomes_project 2 27993960 28032998 - Ptges protein_coding processed_transcript MGP_AJ_T0053920.1 MGP_AJ_G0025554.1 mouse_genomes_project 2 27994152 27999131 - Ptges protein_coding processed_transcript MGP_AJ_T0056497.1 MGP_AJ_G0026171.1 mouse_genomes_project 2 101672799 101708154 + MGP_AJ_P0056497 Fbxo3 protein_coding protein_coding MGP_AJ_T0056498.1 MGP_AJ_G0026171.1 mouse_genomes_project 2 101672903 101702411 + MGP_AJ_P0056498 Fbxo3 protein_coding unknown_likely_coding MGP_AJ_T0056499.1 MGP_AJ_G0026171.1 mouse_genomes_project 2 101672916 101702437 + MGP_AJ_P0056499 Fbxo3 protein_coding protein_coding MGP_AJ_T0056500.1 MGP_AJ_G0026171.1 mouse_genomes_project 2 101672918 101707917 + MGP_AJ_P0056500 Fbxo3 protein_coding protein_coding MGP_AJ_T0056501.1 MGP_AJ_G0026171.1 mouse_genomes_project 2 101672920 101702404 + Fbxo3 protein_coding processed_transcript MGP_AJ_T0056502.1 MGP_AJ_G0026171.1 mouse_genomes_project 2 101672932 101702418 + MGP_AJ_P0056502 Fbxo3 protein_coding protein_coding MGP_AJ_T0102520.1 MGP_AJ_G0040262.1 mouse_genomes_project 2 152016278 152052320 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0053452.1 MGP_AJ_G0025478.1 mouse_genomes_project 2 23943898 23947715 + MGP_AJ_P0053452 Surf2 protein_coding protein_coding MGP_AJ_T0053453.1 MGP_AJ_G0025478.1 mouse_genomes_project 2 23943912 23947704 + Surf2 protein_coding processed_transcript MGP_AJ_T0053454.1 MGP_AJ_G0025478.1 mouse_genomes_project 2 23944200 23947353 + Surf2 protein_coding processed_transcript MGP_AJ_T0053455.1 MGP_AJ_G0025478.1 mouse_genomes_project 2 23944200 23947698 + Surf2 protein_coding retained_intron MGP_AJ_T0053456.1 MGP_AJ_G0025478.1 mouse_genomes_project 2 23944344 23947485 + Surf2 protein_coding processed_transcript MGP_AJ_T0053457.1 MGP_AJ_G0025478.1 mouse_genomes_project 2 23944959 23947367 + Surf2 protein_coding processed_transcript MGP_AJ_T0010481.1 MGP_AJ_G0008603.1 mouse_genomes_project 2 167277145 167277209 - Mir7004 miRNA miRNA MGP_AJ_T0055757.1 MGP_AJ_G0025907.1 mouse_genomes_project 2 83105758 83106703 + MGP_AJ_P0055757 Olfr1009 protein_coding protein_coding MGP_AJ_T0056682.1 MGP_AJ_G0026230.1 mouse_genomes_project 2 109396365 109397304 - MGP_AJ_P0056682 protein_coding protein_coding MGP_AJ_T0011510.1 MGP_AJ_G0009632.1 mouse_genomes_project 2 112025142 112025460 + Gm25103 misc_RNA misc_RNA MGP_AJ_T0010365.1 MGP_AJ_G0008487.1 mouse_genomes_project 2 7538107 7538209 + Mir297a-3 miRNA miRNA MGP_AJ_T0001028.1 MGP_AJ_G0000959.1 mouse_genomes_project 2 8394031 8396242 - TEC TEC MGP_AJ_T0013404.1 MGP_AJ_G0011499.1 mouse_genomes_project 2 23780 24296 - processed_pseudogene processed_pseudogene MGP_AJ_T0057399.1 MGP_AJ_G0026392.1 mouse_genomes_project 2 123456462 123459255 + MGP_AJ_P0057399 Gm9913 protein_coding protein_coding MGP_AJ_T0007265.1 MGP_AJ_G0005955.1 mouse_genomes_project 2 89686587 89691187 - 2900072N19Rik lincRNA lincRNA MGP_AJ_T0059245.1 MGP_AJ_G0026847.1 mouse_genomes_project 2 163378247 163397466 - MGP_AJ_P0059245 Pltp protein_coding protein_coding MGP_AJ_T0059246.1 MGP_AJ_G0026847.1 mouse_genomes_project 2 163378247 163397544 - MGP_AJ_P0059246 Pltp protein_coding protein_coding MGP_AJ_T0059247.1 MGP_AJ_G0026847.1 mouse_genomes_project 2 163378247 163397375 - MGP_AJ_P0059247 Pltp protein_coding protein_coding MGP_AJ_T0059248.1 MGP_AJ_G0026847.1 mouse_genomes_project 2 163386508 163396629 - Pltp protein_coding retained_intron MGP_AJ_T0059249.1 MGP_AJ_G0026847.1 mouse_genomes_project 2 163392306 163397459 - Pltp protein_coding processed_transcript MGP_AJ_T0059250.1 MGP_AJ_G0026847.1 mouse_genomes_project 2 163392443 163397453 - MGP_AJ_P0059250 Pltp protein_coding protein_coding MGP_AJ_T0059251.1 MGP_AJ_G0026847.1 mouse_genomes_project 2 163394154 163397463 - MGP_AJ_P0059251 Pltp protein_coding protein_coding MGP_AJ_T0001059.1 MGP_AJ_G0000990.1 mouse_genomes_project 2 29633672 29637937 + TEC TEC MGP_AJ_T0013659.1 MGP_AJ_G0011754.1 mouse_genomes_project 2 88636990 88637335 - processed_pseudogene processed_pseudogene MGP_AJ_T0055913.1 MGP_AJ_G0026045.1 mouse_genomes_project 2 86776368 86777304 - MGP_AJ_P0055913 Olfr1222 protein_coding protein_coding MGP_AJ_T0055914.1 MGP_AJ_G0026045.1 mouse_genomes_project 2 86776653 86777306 - MGP_AJ_P0055914 Olfr1222 protein_coding protein_coding MGP_AJ_T0055771.1 MGP_AJ_G0025920.1 mouse_genomes_project 2 83383797 83384808 + MGP_AJ_P0055771 Olfr1031 protein_coding protein_coding MGP_AJ_T0010368.1 MGP_AJ_G0008490.1 mouse_genomes_project 2 7539624 7539714 + Gm24806 miRNA miRNA MGP_AJ_T0059001.1 MGP_AJ_G0026773.1 mouse_genomes_project 2 159279118 159400625 - Zhx3 protein_coding processed_transcript MGP_AJ_T0059009.1 MGP_AJ_G0026773.1 mouse_genomes_project 2 159295595 159400199 - MGP_AJ_P0059009 Zhx3 protein_coding protein_coding MGP_AJ_T0059010.1 MGP_AJ_G0026773.1 mouse_genomes_project 2 159296192 159382574 - MGP_AJ_P0059010 Zhx3 protein_coding protein_coding MGP_AJ_T0059011.1 MGP_AJ_G0026773.1 mouse_genomes_project 2 159300855 159400617 - MGP_AJ_P0059011 Zhx3 protein_coding protein_coding MGP_AJ_T0059012.1 MGP_AJ_G0026773.1 mouse_genomes_project 2 159312512 159400456 - MGP_AJ_P0059012 Zhx3 protein_coding protein_coding MGP_AJ_T0059013.1 MGP_AJ_G0026773.1 mouse_genomes_project 2 159312549 159400617 - MGP_AJ_P0059013 Zhx3 protein_coding protein_coding MGP_AJ_T0055444.1 MGP_AJ_G0025836.1 mouse_genomes_project 2 73226687 73325748 + MGP_AJ_P0055444 Agps protein_coding protein_coding MGP_AJ_T0055445.1 MGP_AJ_G0025836.1 mouse_genomes_project 2 73226699 73289637 + MGP_AJ_P0055445 Agps protein_coding protein_coding MGP_AJ_T0055446.1 MGP_AJ_G0025836.1 mouse_genomes_project 2 73227015 73320476 + MGP_AJ_P0055446 Agps protein_coding protein_coding MGP_AJ_T0055447.1 MGP_AJ_G0025836.1 mouse_genomes_project 2 73263118 73272746 + MGP_AJ_P0055447 Agps protein_coding protein_coding MGP_AJ_T0055448.1 MGP_AJ_G0025836.1 mouse_genomes_project 2 73269073 73286227 + Agps protein_coding processed_transcript MGP_AJ_T0055449.1 MGP_AJ_G0025836.1 mouse_genomes_project 2 73288537 73320546 + MGP_AJ_P0055449 Agps protein_coding nonsense_mediated_decay MGP_AJ_T0055450.1 MGP_AJ_G0025836.1 mouse_genomes_project 2 73303561 73306060 + Agps protein_coding retained_intron MGP_AJ_T0101025.1 MGP_AJ_G0038991.1 mouse_genomes_project 2 29988576 29988704 + Gm24165 snoRNA snoRNA MGP_AJ_T0056674.1 MGP_AJ_G0026222.1 mouse_genomes_project 2 109054946 109055882 + MGP_AJ_P0056674 protein_coding protein_coding MGP_AJ_T0054380.1 MGP_AJ_G0025621.1 mouse_genomes_project 2 32069652 32078811 + Cutal protein_coding retained_intron MGP_AJ_T0054381.1 MGP_AJ_G0025621.1 mouse_genomes_project 2 32069719 32088357 + MGP_AJ_P0054381 Cutal protein_coding protein_coding MGP_AJ_T0055753.1 MGP_AJ_G0025903.1 mouse_genomes_project 2 82971044 82971989 + MGP_AJ_P0055753 Olfr998 protein_coding protein_coding MGP_AJ_T0059382.1 MGP_AJ_G0026870.1 mouse_genomes_project 2 165406846 165499443 + MGP_AJ_P0059382 Arfgef2 protein_coding protein_coding MGP_AJ_T0059383.1 MGP_AJ_G0026870.1 mouse_genomes_project 2 165423374 165448147 + MGP_AJ_P0059383 Arfgef2 protein_coding protein_coding MGP_AJ_T0059053.1 MGP_AJ_G0026782.1 mouse_genomes_project 2 161553993 161584385 + MGP_AJ_P0059053 Ift52 protein_coding protein_coding MGP_AJ_T0059054.1 MGP_AJ_G0026782.1 mouse_genomes_project 2 161554130 161570126 + MGP_AJ_P0059054 Ift52 protein_coding protein_coding MGP_AJ_T0059055.1 MGP_AJ_G0026782.1 mouse_genomes_project 2 161554158 161560184 + Ift52 protein_coding processed_transcript MGP_AJ_T0059056.1 MGP_AJ_G0026782.1 mouse_genomes_project 2 161559085 161567285 + Ift52 protein_coding processed_transcript MGP_AJ_T0057606.1 MGP_AJ_G0026444.1 mouse_genomes_project 2 126972224 127024081 + MGP_AJ_P0057606 Zc3h6 protein_coding protein_coding MGP_AJ_T0057607.1 MGP_AJ_G0026444.1 mouse_genomes_project 2 126972231 126999302 + MGP_AJ_P0057607 Zc3h6 protein_coding protein_coding MGP_AJ_T0003992.1 MGP_AJ_G0003556.1 mouse_genomes_project 2 63706848 63812769 + Gm13629 antisense antisense MGP_AJ_T0003993.1 MGP_AJ_G0003556.1 mouse_genomes_project 2 63706864 63777648 + Gm13629 antisense antisense MGP_AJ_T0054048.1 MGP_AJ_G0025575.1 mouse_genomes_project 2 29290527 29375573 + MGP_AJ_P0054048 Prrc2b protein_coding protein_coding MGP_AJ_T0054049.1 MGP_AJ_G0025575.1 mouse_genomes_project 2 29290593 29375558 + MGP_AJ_P0054049 Prrc2b protein_coding protein_coding MGP_AJ_T0054050.1 MGP_AJ_G0025575.1 mouse_genomes_project 2 29323727 29372196 + MGP_AJ_P0054050 Prrc2b protein_coding protein_coding MGP_AJ_T0054051.1 MGP_AJ_G0025575.1 mouse_genomes_project 2 29346758 29360034 + Prrc2b protein_coding processed_transcript MGP_AJ_T0054052.1 MGP_AJ_G0025575.1 mouse_genomes_project 2 29352573 29359693 + MGP_AJ_P0054052 Prrc2b protein_coding protein_coding MGP_AJ_T0054053.1 MGP_AJ_G0025575.1 mouse_genomes_project 2 29356453 29359988 + MGP_AJ_P0054053 Prrc2b protein_coding protein_coding MGP_AJ_T0054054.1 MGP_AJ_G0025575.1 mouse_genomes_project 2 29357587 29359532 + Prrc2b protein_coding processed_transcript MGP_AJ_T0054055.1 MGP_AJ_G0025575.1 mouse_genomes_project 2 29357655 29361743 + Prrc2b protein_coding processed_transcript MGP_AJ_T0054056.1 MGP_AJ_G0025575.1 mouse_genomes_project 2 29359905 29362695 + Prrc2b protein_coding processed_transcript MGP_AJ_T0054057.1 MGP_AJ_G0025575.1 mouse_genomes_project 2 29360143 29361811 + Prrc2b protein_coding processed_transcript MGP_AJ_T0057655.1 MGP_AJ_G0026458.1 mouse_genomes_project 2 128148755 128190499 + Tgm6 protein_coding processed_transcript MGP_AJ_T0057656.1 MGP_AJ_G0026458.1 mouse_genomes_project 2 128159564 128190499 + Tgm6 protein_coding processed_transcript MGP_AJ_T0057657.1 MGP_AJ_G0026458.1 mouse_genomes_project 2 128159564 128190499 + MGP_AJ_P0057657 Tgm6 protein_coding protein_coding MGP_AJ_T0007267.1 MGP_AJ_G0005957.1 mouse_genomes_project 2 90163133 90174449 - Gm13817 lincRNA lincRNA MGP_AJ_T0057563.1 MGP_AJ_G0026433.1 mouse_genomes_project 2 125783158 125814061 - MGP_AJ_P0057563 Bub1 protein_coding protein_coding MGP_AJ_T0057564.1 MGP_AJ_G0026433.1 mouse_genomes_project 2 125786539 125787302 - Bub1 protein_coding retained_intron MGP_AJ_T0057565.1 MGP_AJ_G0026433.1 mouse_genomes_project 2 125790970 125796346 - Bub1 protein_coding processed_transcript MGP_AJ_T0057566.1 MGP_AJ_G0026433.1 mouse_genomes_project 2 125793016 125797398 - Bub1 protein_coding processed_transcript MGP_AJ_T0057567.1 MGP_AJ_G0026433.1 mouse_genomes_project 2 125805758 125814000 - Bub1 protein_coding retained_intron MGP_AJ_T0059470.1 MGP_AJ_G0026887.1 mouse_genomes_project 2 166605261 166635516 - Fam65c protein_coding processed_transcript MGP_AJ_T0059471.1 MGP_AJ_G0026887.1 mouse_genomes_project 2 166605263 166635516 - MGP_AJ_P0059471 Fam65c protein_coding protein_coding MGP_AJ_T0059472.1 MGP_AJ_G0026887.1 mouse_genomes_project 2 166610163 166611861 - Fam65c protein_coding retained_intron MGP_AJ_T0059473.1 MGP_AJ_G0026887.1 mouse_genomes_project 2 166613901 166616447 - Fam65c protein_coding retained_intron MGP_AJ_T0054375.1 MGP_AJ_G0025620.1 mouse_genomes_project 2 32045069 32066157 - MGP_AJ_P0054375 Psmd5 protein_coding protein_coding MGP_AJ_T0054376.1 MGP_AJ_G0025620.1 mouse_genomes_project 2 32047437 32066128 - Psmd5 protein_coding retained_intron MGP_AJ_T0054377.1 MGP_AJ_G0025620.1 mouse_genomes_project 2 32047778 32053021 - MGP_AJ_P0054377 Psmd5 protein_coding protein_coding MGP_AJ_T0054378.1 MGP_AJ_G0025620.1 mouse_genomes_project 2 32062133 32070162 - Psmd5 protein_coding processed_transcript MGP_AJ_T0054379.1 MGP_AJ_G0025620.1 mouse_genomes_project 2 32066302 32067405 - Psmd5 protein_coding processed_transcript MGP_AJ_T0013827.1 MGP_AJ_G0011922.1 mouse_genomes_project 2 151728293 151728575 + processed_pseudogene processed_pseudogene MGP_AJ_T0011487.1 MGP_AJ_G0009609.1 mouse_genomes_project 2 10314167 10314354 + Gm27540 misc_RNA misc_RNA MGP_AJ_T0055790.1 MGP_AJ_G0025939.1 mouse_genomes_project 2 83784252 83785257 - MGP_AJ_P0055790 Olfr1058 protein_coding protein_coding MGP_AJ_T0013801.1 MGP_AJ_G0011896.1 mouse_genomes_project 2 143990191 143990806 + processed_pseudogene processed_pseudogene MGP_AJ_T0059337.1 MGP_AJ_G0026864.1 mouse_genomes_project 2 164344423 164420302 - MGP_AJ_P0059337 Zmynd8 protein_coding protein_coding MGP_AJ_T0059338.1 MGP_AJ_G0026864.1 mouse_genomes_project 2 164344423 164447733 - MGP_AJ_P0059338 Zmynd8 protein_coding protein_coding MGP_AJ_T0059339.1 MGP_AJ_G0026864.1 mouse_genomes_project 2 164344426 164445259 - MGP_AJ_P0059339 Zmynd8 protein_coding protein_coding MGP_AJ_T0059340.1 MGP_AJ_G0026864.1 mouse_genomes_project 2 164344426 164445259 - MGP_AJ_P0059340 Zmynd8 protein_coding protein_coding MGP_AJ_T0059341.1 MGP_AJ_G0026864.1 mouse_genomes_project 2 164345634 164447754 - MGP_AJ_P0059341 Zmynd8 protein_coding protein_coding MGP_AJ_T0059342.1 MGP_AJ_G0026864.1 mouse_genomes_project 2 164345661 164447630 - Zmynd8 protein_coding processed_transcript MGP_AJ_T0059343.1 MGP_AJ_G0026864.1 mouse_genomes_project 2 164345661 164440545 - MGP_AJ_P0059343 Zmynd8 protein_coding protein_coding MGP_AJ_T0059344.1 MGP_AJ_G0026864.1 mouse_genomes_project 2 164345871 164447856 - MGP_AJ_P0059344 Zmynd8 protein_coding protein_coding MGP_AJ_T0059345.1 MGP_AJ_G0026864.1 mouse_genomes_project 2 164389326 164437893 - MGP_AJ_P0059345 Zmynd8 protein_coding protein_coding MGP_AJ_T0059346.1 MGP_AJ_G0026864.1 mouse_genomes_project 2 164389382 164459496 - MGP_AJ_P0059346 Zmynd8 protein_coding protein_coding MGP_AJ_T0059347.1 MGP_AJ_G0026864.1 mouse_genomes_project 2 164390122 164447715 - MGP_AJ_P0059347 Zmynd8 protein_coding unknown_likely_coding MGP_AJ_T0059348.1 MGP_AJ_G0026864.1 mouse_genomes_project 2 164395340 164420302 - Zmynd8 protein_coding processed_transcript MGP_AJ_T0059349.1 MGP_AJ_G0026864.1 mouse_genomes_project 2 164402208 164461537 - MGP_AJ_P0059349 Zmynd8 protein_coding protein_coding MGP_AJ_T0059350.1 MGP_AJ_G0026864.1 mouse_genomes_project 2 164404945 164424125 - Zmynd8 protein_coding processed_transcript MGP_AJ_T0059351.1 MGP_AJ_G0026864.1 mouse_genomes_project 2 164407907 164414281 - Zmynd8 protein_coding processed_transcript MGP_AJ_T0059352.1 MGP_AJ_G0026864.1 mouse_genomes_project 2 164414191 164438716 - Zmynd8 protein_coding processed_transcript MGP_AJ_T0059353.1 MGP_AJ_G0026864.1 mouse_genomes_project 2 164414191 164438524 - MGP_AJ_P0059353 Zmynd8 protein_coding protein_coding MGP_AJ_T0059354.1 MGP_AJ_G0026864.1 mouse_genomes_project 2 164414192 164442894 - Zmynd8 protein_coding processed_transcript MGP_AJ_T0059355.1 MGP_AJ_G0026864.1 mouse_genomes_project 2 164435123 164447191 - Zmynd8 protein_coding processed_transcript MGP_AJ_T0059356.1 MGP_AJ_G0026864.1 mouse_genomes_project 2 164436986 164447220 - Zmynd8 protein_coding retained_intron MGP_AJ_T0059357.1 MGP_AJ_G0026864.1 mouse_genomes_project 2 164437264 164438306 - Zmynd8 protein_coding retained_intron MGP_AJ_T0059358.1 MGP_AJ_G0026864.1 mouse_genomes_project 2 164437372 164447733 - Zmynd8 protein_coding retained_intron MGP_AJ_T0007370.1 MGP_AJ_G0006038.1 mouse_genomes_project 2 153550794 153553087 - 2310005A03Rik lincRNA lincRNA MGP_AJ_T0058963.1 MGP_AJ_G0026763.1 mouse_genomes_project 2 157127747 157132729 + MGP_AJ_P0058963 Slc32a1 protein_coding protein_coding MGP_AJ_T0013804.1 MGP_AJ_G0011899.1 mouse_genomes_project 2 144987648 144988250 + processed_pseudogene processed_pseudogene MGP_AJ_T0055980.1 MGP_AJ_G0026090.1 mouse_genomes_project 2 88010865 88011559 - Ptprj protein_coding processed_transcript MGP_AJ_T0055981.1 MGP_AJ_G0026090.1 mouse_genomes_project 2 88010867 88080578 - MGP_AJ_P0055981 Ptprj protein_coding protein_coding MGP_AJ_T0055982.1 MGP_AJ_G0026090.1 mouse_genomes_project 2 88014001 88183127 - MGP_AJ_P0055982 Ptprj protein_coding protein_coding MGP_AJ_T0055983.1 MGP_AJ_G0026090.1 mouse_genomes_project 2 88029555 88080527 - MGP_AJ_P0055983 Ptprj protein_coding protein_coding MGP_AJ_T0056260.1 MGP_AJ_G0026127.1 mouse_genomes_project 2 90016166 90017232 + 1700029I15Rik protein_coding retained_intron MGP_AJ_T0056261.1 MGP_AJ_G0026127.1 mouse_genomes_project 2 90016546 90017232 + MGP_AJ_P0056261 1700029I15Rik protein_coding protein_coding MGP_AJ_T0056262.1 MGP_AJ_G0026127.1 mouse_genomes_project 2 90016546 90019321 + MGP_AJ_P0056262 1700029I15Rik protein_coding protein_coding MGP_AJ_T0056263.1 MGP_AJ_G0026127.1 mouse_genomes_project 2 90016546 90017218 + MGP_AJ_P0056263 1700029I15Rik protein_coding nonsense_mediated_decay MGP_AJ_T0102519.1 MGP_AJ_G0040261.1 mouse_genomes_project 2 147051046 147055019 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0055335.1 MGP_AJ_G0025809.1 mouse_genomes_project 2 70299036 70342496 - MGP_AJ_P0055335 Sp3 protein_coding protein_coding MGP_AJ_T0055336.1 MGP_AJ_G0025809.1 mouse_genomes_project 2 70299257 70342476 - MGP_AJ_P0055336 Sp3 protein_coding protein_coding MGP_AJ_T0055337.1 MGP_AJ_G0025809.1 mouse_genomes_project 2 70299261 70341336 - Sp3 protein_coding processed_transcript MGP_AJ_T0055338.1 MGP_AJ_G0025809.1 mouse_genomes_project 2 70300890 70303695 - Sp3 protein_coding processed_transcript MGP_AJ_T0055339.1 MGP_AJ_G0025809.1 mouse_genomes_project 2 70309005 70332516 - Sp3 protein_coding processed_transcript MGP_AJ_T0013776.1 MGP_AJ_G0011871.1 mouse_genomes_project 2 134488730 134489434 - processed_pseudogene processed_pseudogene MGP_AJ_T0054639.1 MGP_AJ_G0025690.1 mouse_genomes_project 2 37847591 37867680 - Lrp1b protein_coding processed_transcript MGP_AJ_T0054640.1 MGP_AJ_G0025690.1 mouse_genomes_project 2 37847593 39894283 - MGP_AJ_P0054640 Lrp1b protein_coding protein_coding MGP_AJ_T0054641.1 MGP_AJ_G0025690.1 mouse_genomes_project 2 37847879 37881160 - MGP_AJ_P0054641 Lrp1b protein_coding protein_coding MGP_AJ_T0054642.1 MGP_AJ_G0025690.1 mouse_genomes_project 2 37847879 37956547 - MGP_AJ_P0054642 Lrp1b protein_coding protein_coding MGP_AJ_T0054643.1 MGP_AJ_G0025690.1 mouse_genomes_project 2 37852622 37910362 - MGP_AJ_P0054643 Lrp1b protein_coding protein_coding MGP_AJ_T0054644.1 MGP_AJ_G0025690.1 mouse_genomes_project 2 37930712 37953523 - Lrp1b protein_coding retained_intron MGP_AJ_T0054645.1 MGP_AJ_G0025690.1 mouse_genomes_project 2 38047515 39046710 - MGP_AJ_P0054645 Lrp1b protein_coding protein_coding MGP_AJ_T0054646.1 MGP_AJ_G0025690.1 mouse_genomes_project 2 38530385 39893715 - MGP_AJ_P0054646 Lrp1b protein_coding protein_coding MGP_AJ_T0054647.1 MGP_AJ_G0025690.1 mouse_genomes_project 2 38754751 39893731 - Lrp1b protein_coding retained_intron MGP_AJ_T0054648.1 MGP_AJ_G0025690.1 mouse_genomes_project 2 39318027 39893584 - MGP_AJ_P0054648 Lrp1b protein_coding protein_coding MGP_AJ_T0054649.1 MGP_AJ_G0025690.1 mouse_genomes_project 2 39562398 39893914 - Lrp1b protein_coding retained_intron MGP_AJ_T0054650.1 MGP_AJ_G0025690.1 mouse_genomes_project 2 39890521 39893673 - MGP_AJ_P0054650 Lrp1b protein_coding protein_coding MGP_AJ_T0001061.1 MGP_AJ_G0000992.1 mouse_genomes_project 2 30786365 30786644 + TEC TEC MGP_AJ_T0102493.1 MGP_AJ_G0040235.1 mouse_genomes_project 2 85368992 85369929 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0099743.1 MGP_AJ_G0037709.1 mouse_genomes_project 2 2247622 2247809 - Gm23118 snRNA snRNA MGP_AJ_T0056505.1 MGP_AJ_G0026174.1 mouse_genomes_project 2 101715858 101759183 + MGP_AJ_P0056505 Cd59b protein_coding protein_coding MGP_AJ_T0056506.1 MGP_AJ_G0026174.1 mouse_genomes_project 2 101717042 101759324 + MGP_AJ_P0056506 Cd59b protein_coding protein_coding MGP_AJ_T0007413.1 MGP_AJ_G0006075.1 mouse_genomes_project 2 167629009 167629648 + 1700017J07Rik lincRNA lincRNA MGP_AJ_T0007263.1 MGP_AJ_G0005953.1 mouse_genomes_project 2 88862710 88867964 - Gm17281 lincRNA lincRNA MGP_AJ_T0013707.1 MGP_AJ_G0011802.1 mouse_genomes_project 2 104689277 104690114 + processed_pseudogene processed_pseudogene MGP_AJ_T0059710.1 MGP_AJ_G0026952.1 mouse_genomes_project 2 178932975 178937999 - MGP_AJ_P0059710 Hrh3 protein_coding protein_coding MGP_AJ_T0059711.1 MGP_AJ_G0026952.1 mouse_genomes_project 2 178933161 178937662 - MGP_AJ_P0059711 Hrh3 protein_coding protein_coding MGP_AJ_T0059712.1 MGP_AJ_G0026952.1 mouse_genomes_project 2 178933388 178937662 - MGP_AJ_P0059712 Hrh3 protein_coding protein_coding MGP_AJ_T0059713.1 MGP_AJ_G0026952.1 mouse_genomes_project 2 178933388 178937662 - MGP_AJ_P0059713 Hrh3 protein_coding protein_coding MGP_AJ_T0059714.1 MGP_AJ_G0026952.1 mouse_genomes_project 2 178933789 178937685 - MGP_AJ_P0059714 Hrh3 protein_coding nonsense_mediated_decay MGP_AJ_T0059715.1 MGP_AJ_G0026952.1 mouse_genomes_project 2 178934006 178937662 - MGP_AJ_P0059715 Hrh3 protein_coding protein_coding MGP_AJ_T0059716.1 MGP_AJ_G0026952.1 mouse_genomes_project 2 178934006 178937662 - MGP_AJ_P0059716 Hrh3 protein_coding protein_coding MGP_AJ_T0059717.1 MGP_AJ_G0026952.1 mouse_genomes_project 2 178934494 178936846 - Hrh3 protein_coding retained_intron MGP_AJ_T0056488.1 MGP_AJ_G0026170.1 mouse_genomes_project 2 101617525 101672872 - 4931422A03Rik protein_coding processed_transcript MGP_AJ_T0056495.1 MGP_AJ_G0026170.1 mouse_genomes_project 2 101642233 101673381 - MGP_AJ_P0056495 4931422A03Rik protein_coding protein_coding MGP_AJ_T0056496.1 MGP_AJ_G0026170.1 mouse_genomes_project 2 101670972 101673434 - 4931422A03Rik protein_coding retained_intron MGP_AJ_T0013680.1 MGP_AJ_G0011775.1 mouse_genomes_project 2 97685697 97685881 + processed_pseudogene processed_pseudogene MGP_AJ_T0053983.1 MGP_AJ_G0025563.1 mouse_genomes_project 2 28587194 28637385 + MGP_AJ_P0053983 Ass1 protein_coding unknown_likely_coding MGP_AJ_T0053984.1 MGP_AJ_G0025563.1 mouse_genomes_project 2 28587200 28637640 + MGP_AJ_P0053984 Ass1 protein_coding protein_coding MGP_AJ_T0053985.1 MGP_AJ_G0025563.1 mouse_genomes_project 2 28614729 28627125 + Ass1 protein_coding retained_intron MGP_AJ_T0053986.1 MGP_AJ_G0025563.1 mouse_genomes_project 2 28635457 28637499 + Ass1 protein_coding retained_intron MGP_AJ_T0057522.1 MGP_AJ_G0026421.1 mouse_genomes_project 2 125324228 125343369 + MGP_AJ_P0057522 Astl protein_coding protein_coding MGP_AJ_T0057523.1 MGP_AJ_G0026421.1 mouse_genomes_project 2 125327210 125343368 + MGP_AJ_P0057523 Astl protein_coding protein_coding MGP_AJ_T0057524.1 MGP_AJ_G0026421.1 mouse_genomes_project 2 125327224 125343367 + MGP_AJ_P0057524 Astl protein_coding protein_coding MGP_AJ_T0057525.1 MGP_AJ_G0026421.1 mouse_genomes_project 2 125327498 125335820 + MGP_AJ_P0057525 Astl protein_coding protein_coding MGP_AJ_T0055843.1 MGP_AJ_G0025982.1 mouse_genomes_project 2 85053571 85054513 - MGP_AJ_P0055843 protein_coding protein_coding MGP_AJ_T0010471.1 MGP_AJ_G0008593.1 mouse_genomes_project 2 156763891 156763953 - Mir7685 miRNA miRNA MGP_AJ_T0013417.1 MGP_AJ_G0011512.1 mouse_genomes_project 2 5114800 5115461 - processed_pseudogene processed_pseudogene MGP_AJ_T0007355.1 MGP_AJ_G0006027.1 mouse_genomes_project 2 145830837 145838315 + A530006G24Rik lincRNA lincRNA MGP_AJ_T0010363.1 MGP_AJ_G0008485.1 mouse_genomes_project 2 7536882 7536962 + Mir466g miRNA miRNA MGP_AJ_T0054798.1 MGP_AJ_G0025711.1 mouse_genomes_project 2 49761452 50014399 - MGP_AJ_P0054798 Cacnb4 protein_coding protein_coding MGP_AJ_T0054799.1 MGP_AJ_G0025711.1 mouse_genomes_project 2 49761457 49893667 - MGP_AJ_P0054799 Cacnb4 protein_coding protein_coding MGP_AJ_T0054800.1 MGP_AJ_G0025711.1 mouse_genomes_project 2 49761457 50014634 - MGP_AJ_P0054800 Cacnb4 protein_coding protein_coding MGP_AJ_T0054801.1 MGP_AJ_G0025711.1 mouse_genomes_project 2 49761457 49893674 - MGP_AJ_P0054801 Cacnb4 protein_coding protein_coding MGP_AJ_T0054802.1 MGP_AJ_G0025711.1 mouse_genomes_project 2 49891290 49891813 - Cacnb4 protein_coding processed_transcript MGP_AJ_T0054803.1 MGP_AJ_G0025711.1 mouse_genomes_project 2 50013544 50013961 - Cacnb4 protein_coding processed_transcript MGP_AJ_T0003944.1 MGP_AJ_G0003517.1 mouse_genomes_project 2 27902653 27906122 + 4930527E20Rik antisense antisense MGP_AJ_T0054508.1 MGP_AJ_G0025653.1 mouse_genomes_project 2 34043114 34044053 + MGP_AJ_P0054508 Olfr350 protein_coding protein_coding MGP_AJ_T0057256.1 MGP_AJ_G0026356.1 mouse_genomes_project 2 119271384 119276634 + MGP_AJ_P0057256 Hypk protein_coding protein_coding MGP_AJ_T0057257.1 MGP_AJ_G0026356.1 mouse_genomes_project 2 119274819 119276560 + Hypk protein_coding retained_intron MGP_AJ_T0057258.1 MGP_AJ_G0026356.1 mouse_genomes_project 2 119275089 119276796 + MGP_AJ_P0057258 Hypk protein_coding protein_coding MGP_AJ_T0057259.1 MGP_AJ_G0026356.1 mouse_genomes_project 2 119275250 119276433 + Hypk protein_coding retained_intron MGP_AJ_T0057260.1 MGP_AJ_G0026356.1 mouse_genomes_project 2 119275260 119276487 + Hypk protein_coding processed_transcript MGP_AJ_T0004050.1 MGP_AJ_G0003592.1 mouse_genomes_project 2 103216737 103348427 - Pax6os1 antisense antisense MGP_AJ_T0004051.1 MGP_AJ_G0003592.1 mouse_genomes_project 2 103219689 103348377 - Pax6os1 antisense antisense MGP_AJ_T0013450.1 MGP_AJ_G0011545.1 mouse_genomes_project 2 16541806 16542034 - processed_pseudogene processed_pseudogene MGP_AJ_T0059147.1 MGP_AJ_G0026815.1 mouse_genomes_project 2 162916692 162932344 - MGP_AJ_P0059147 Matn4 protein_coding protein_coding MGP_AJ_T0059148.1 MGP_AJ_G0026815.1 mouse_genomes_project 2 162916692 162932346 - MGP_AJ_P0059148 Matn4 protein_coding protein_coding MGP_AJ_T0059149.1 MGP_AJ_G0026815.1 mouse_genomes_project 2 162916692 162932892 - MGP_AJ_P0059149 Matn4 protein_coding protein_coding MGP_AJ_T0059150.1 MGP_AJ_G0026815.1 mouse_genomes_project 2 162916692 162932344 - MGP_AJ_P0059150 Matn4 protein_coding protein_coding MGP_AJ_T0059151.1 MGP_AJ_G0026815.1 mouse_genomes_project 2 162921222 162932345 - Matn4 protein_coding retained_intron MGP_AJ_T0013729.1 MGP_AJ_G0011824.1 mouse_genomes_project 2 114816049 114816490 + processed_pseudogene processed_pseudogene MGP_AJ_T0007274.1 MGP_AJ_G0005961.1 mouse_genomes_project 2 91891664 91904364 - lincRNA lincRNA MGP_AJ_T0007275.1 MGP_AJ_G0005961.1 mouse_genomes_project 2 91900767 91904383 - lincRNA lincRNA MGP_AJ_T0013655.1 MGP_AJ_G0011750.1 mouse_genomes_project 2 85401606 85401829 + processed_pseudogene processed_pseudogene MGP_AJ_T0013721.1 MGP_AJ_G0011816.1 mouse_genomes_project 2 109569997 109570812 - processed_pseudogene processed_pseudogene MGP_AJ_T0058203.1 MGP_AJ_G0026590.1 mouse_genomes_project 2 148278333 148312038 - MGP_AJ_P0058203 Zfp120 protein_coding nonsense_mediated_decay MGP_AJ_T0058204.1 MGP_AJ_G0026590.1 mouse_genomes_project 2 148278333 148312068 - MGP_AJ_P0058204 Zfp120 protein_coding protein_coding MGP_AJ_T0058205.1 MGP_AJ_G0026590.1 mouse_genomes_project 2 148278333 148312038 - MGP_AJ_P0058205 Zfp120 protein_coding protein_coding MGP_AJ_T0058206.1 MGP_AJ_G0026590.1 mouse_genomes_project 2 148283197 148312016 - Zfp120 protein_coding processed_transcript MGP_AJ_T0010430.1 MGP_AJ_G0008552.1 mouse_genomes_project 2 90020996 90021059 - Mir7000 miRNA miRNA MGP_AJ_T0013576.1 MGP_AJ_G0011671.1 mouse_genomes_project 2 62588988 62590180 - processed_pseudogene processed_pseudogene MGP_AJ_T0055304.1 MGP_AJ_G0025805.1 mouse_genomes_project 2 69208093 69239058 + MGP_AJ_P0055304 Pdk1 protein_coding protein_coding MGP_AJ_T0055305.1 MGP_AJ_G0025805.1 mouse_genomes_project 2 69208189 69219059 + Pdk1 protein_coding processed_transcript MGP_AJ_T0055306.1 MGP_AJ_G0025805.1 mouse_genomes_project 2 69208195 69221481 + Pdk1 protein_coding processed_transcript MGP_AJ_T0055307.1 MGP_AJ_G0025805.1 mouse_genomes_project 2 69208215 69237167 + Pdk1 protein_coding processed_transcript MGP_AJ_T0055308.1 MGP_AJ_G0025805.1 mouse_genomes_project 2 69208414 69219310 + Pdk1 protein_coding processed_transcript MGP_AJ_T0055309.1 MGP_AJ_G0025805.1 mouse_genomes_project 2 69208606 69224134 + Pdk1 protein_coding processed_transcript MGP_AJ_T0055310.1 MGP_AJ_G0025805.1 mouse_genomes_project 2 69209964 69218738 + Pdk1 protein_coding processed_transcript MGP_AJ_T0055311.1 MGP_AJ_G0025805.1 mouse_genomes_project 2 69222597 69231653 + Pdk1 protein_coding processed_transcript MGP_AJ_T0059535.1 MGP_AJ_G0026901.1 mouse_genomes_project 2 169020686 169102782 - MGP_AJ_P0059535 Bcas1 protein_coding protein_coding MGP_AJ_T0059536.1 MGP_AJ_G0026901.1 mouse_genomes_project 2 169020838 169095616 - MGP_AJ_P0059536 Bcas1 protein_coding protein_coding MGP_AJ_T0059537.1 MGP_AJ_G0026901.1 mouse_genomes_project 2 169020839 169102782 - MGP_AJ_P0059537 Bcas1 protein_coding protein_coding MGP_AJ_T0059538.1 MGP_AJ_G0026901.1 mouse_genomes_project 2 169021626 169023436 - Bcas1 protein_coding processed_transcript MGP_AJ_T0059539.1 MGP_AJ_G0026901.1 mouse_genomes_project 2 169021640 169030810 - Bcas1 protein_coding processed_transcript MGP_AJ_T0059540.1 MGP_AJ_G0026901.1 mouse_genomes_project 2 169021784 169023491 - Bcas1 protein_coding processed_transcript MGP_AJ_T0059541.1 MGP_AJ_G0026901.1 mouse_genomes_project 2 169061123 169062156 - Bcas1 protein_coding processed_transcript MGP_AJ_T0059542.1 MGP_AJ_G0026901.1 mouse_genomes_project 2 169071583 169102782 - Bcas1 protein_coding processed_transcript MGP_AJ_T0053062.1 MGP_AJ_G0025407.1 mouse_genomes_project 2 22221644 22222787 + MGP_AJ_P0053062 Rnf208 protein_coding protein_coding MGP_AJ_T0053063.1 MGP_AJ_G0025407.1 mouse_genomes_project 2 22222318 22223651 + MGP_AJ_P0053063 Rnf208 protein_coding protein_coding MGP_AJ_T0053064.1 MGP_AJ_G0025407.1 mouse_genomes_project 2 22222327 22223652 + MGP_AJ_P0053064 Rnf208 protein_coding protein_coding MGP_AJ_T0055590.1 MGP_AJ_G0025862.1 mouse_genomes_project 2 77961308 78043793 - MGP_AJ_P0055590 Nckap1 protein_coding protein_coding MGP_AJ_T0055591.1 MGP_AJ_G0025862.1 mouse_genomes_project 2 77961314 78043909 - MGP_AJ_P0055591 Nckap1 protein_coding protein_coding MGP_AJ_T0055592.1 MGP_AJ_G0025862.1 mouse_genomes_project 2 77967319 77986930 - Nckap1 protein_coding processed_transcript MGP_AJ_T0055593.1 MGP_AJ_G0025862.1 mouse_genomes_project 2 78007647 78017607 - Nckap1 protein_coding processed_transcript MGP_AJ_T0055594.1 MGP_AJ_G0025862.1 mouse_genomes_project 2 78011468 78017327 - Nckap1 protein_coding processed_transcript MGP_AJ_T0055814.1 MGP_AJ_G0025961.1 mouse_genomes_project 2 84431097 84432072 + MGP_AJ_P0055814 Olfr1102 protein_coding protein_coding MGP_AJ_T0013435.1 MGP_AJ_G0011530.1 mouse_genomes_project 2 12474847 12475820 + processed_pseudogene processed_pseudogene MGP_AJ_T0059989.1 MGP_AJ_G0027001.1 mouse_genomes_project 2 180552316 180553966 - MGP_AJ_P0059989 Lkaaear1 protein_coding protein_coding MGP_AJ_T0059990.1 MGP_AJ_G0027001.1 mouse_genomes_project 2 180552319 180552940 - MGP_AJ_P0059990 Lkaaear1 protein_coding protein_coding MGP_AJ_T0013488.1 MGP_AJ_G0011583.1 mouse_genomes_project 2 32155202 32155369 - processed_pseudogene processed_pseudogene MGP_AJ_T0052757.1 MGP_AJ_G0025353.1 mouse_genomes_project 2 15724439 15728225 + MGP_AJ_P0052757 Commd3 protein_coding protein_coding MGP_AJ_T0052758.1 MGP_AJ_G0025353.1 mouse_genomes_project 2 15724478 15728226 + MGP_AJ_P0052758 Commd3 protein_coding protein_coding MGP_AJ_T0052759.1 MGP_AJ_G0025353.1 mouse_genomes_project 2 15724488 15726688 + Commd3 protein_coding processed_transcript MGP_AJ_T0052760.1 MGP_AJ_G0025353.1 mouse_genomes_project 2 15724490 15726631 + Commd3 protein_coding processed_transcript MGP_AJ_T0052761.1 MGP_AJ_G0025353.1 mouse_genomes_project 2 15724491 15726508 + Commd3 protein_coding processed_transcript MGP_AJ_T0052762.1 MGP_AJ_G0025353.1 mouse_genomes_project 2 15724578 15726396 + Commd3 protein_coding processed_transcript MGP_AJ_T0052763.1 MGP_AJ_G0025353.1 mouse_genomes_project 2 15725653 15726393 + Commd3 protein_coding processed_transcript MGP_AJ_T0052764.1 MGP_AJ_G0025353.1 mouse_genomes_project 2 15725956 15727923 + Commd3 protein_coding processed_transcript MGP_AJ_T0052765.1 MGP_AJ_G0025353.1 mouse_genomes_project 2 15726080 15727976 + Commd3 protein_coding processed_transcript MGP_AJ_T0052766.1 MGP_AJ_G0025353.1 mouse_genomes_project 2 15726342 15727918 + Commd3 protein_coding processed_transcript MGP_AJ_T0052767.1 MGP_AJ_G0025353.1 mouse_genomes_project 2 15726419 15727001 + Commd3 protein_coding processed_transcript MGP_AJ_T0052768.1 MGP_AJ_G0025353.1 mouse_genomes_project 2 15726644 15727496 + Commd3 protein_coding processed_transcript MGP_AJ_T0003955.1 MGP_AJ_G0003528.1 mouse_genomes_project 2 30615192 30617604 + Gm13536 antisense antisense MGP_AJ_T0004021.1 MGP_AJ_G0003575.1 mouse_genomes_project 2 72078065 72078888 - Gm28793 antisense antisense MGP_AJ_T0001018.1 MGP_AJ_G0000949.1 mouse_genomes_project 2 723495 724847 - TEC TEC MGP_AJ_T0013617.1 MGP_AJ_G0011712.1 mouse_genomes_project 2 76815769 76816300 + processed_pseudogene processed_pseudogene MGP_AJ_T0004077.1 MGP_AJ_G0003613.1 mouse_genomes_project 2 125680645 125689877 + Gm14244 antisense antisense MGP_AJ_T0017923.1 MGP_AJ_G0015474.1 mouse_genomes_project 2 178812416 178814566 + 4921531C22Rik processed_transcript processed_transcript MGP_AJ_T0017924.1 MGP_AJ_G0015474.1 mouse_genomes_project 2 178813002 178813540 + 4921531C22Rik processed_transcript processed_transcript MGP_AJ_T0013889.1 MGP_AJ_G0011984.1 mouse_genomes_project 2 180580519 180581421 - processed_pseudogene processed_pseudogene MGP_AJ_T0098436.1 MGP_AJ_G0036420.1 mouse_genomes_project 2 19788411 19788827 - pseudogene pseudogene MGP_AJ_T0053223.1 MGP_AJ_G0025434.1 mouse_genomes_project 2 22563815 22570134 - MGP_AJ_P0053223 Gm996 protein_coding protein_coding MGP_AJ_T0053224.1 MGP_AJ_G0025434.1 mouse_genomes_project 2 22563829 22570163 - MGP_AJ_P0053224 Gm996 protein_coding protein_coding MGP_AJ_T0053225.1 MGP_AJ_G0025434.1 mouse_genomes_project 2 22565372 22568297 - MGP_AJ_P0053225 Gm996 protein_coding protein_coding MGP_AJ_T0053226.1 MGP_AJ_G0025434.1 mouse_genomes_project 2 22568210 22568663 - MGP_AJ_P0053226 Gm996 protein_coding protein_coding MGP_AJ_T0057354.1 MGP_AJ_G0026383.1 mouse_genomes_project 2 120674538 120719790 + MGP_AJ_P0057354 Sqrdl protein_coding protein_coding MGP_AJ_T0057355.1 MGP_AJ_G0026383.1 mouse_genomes_project 2 120674690 120694506 + MGP_AJ_P0057355 Sqrdl protein_coding protein_coding MGP_AJ_T0057356.1 MGP_AJ_G0026383.1 mouse_genomes_project 2 120674692 120694513 + MGP_AJ_P0057356 Sqrdl protein_coding protein_coding MGP_AJ_T0057357.1 MGP_AJ_G0026383.1 mouse_genomes_project 2 120674710 120677848 + Sqrdl protein_coding processed_transcript MGP_AJ_T0057358.1 MGP_AJ_G0026383.1 mouse_genomes_project 2 120681080 120711106 + Sqrdl protein_coding retained_intron MGP_AJ_T0057359.1 MGP_AJ_G0026383.1 mouse_genomes_project 2 120691400 120719774 + MGP_AJ_P0057359 Sqrdl protein_coding protein_coding MGP_AJ_T0057360.1 MGP_AJ_G0026383.1 mouse_genomes_project 2 120694361 120697381 + Sqrdl protein_coding processed_transcript MGP_AJ_T0057361.1 MGP_AJ_G0026383.1 mouse_genomes_project 2 120694378 120719559 + MGP_AJ_P0057361 Sqrdl protein_coding nonsense_mediated_decay MGP_AJ_T0057362.1 MGP_AJ_G0026383.1 mouse_genomes_project 2 120710093 120719780 + MGP_AJ_P0057362 Sqrdl protein_coding protein_coding MGP_AJ_T0099767.1 MGP_AJ_G0037733.1 mouse_genomes_project 2 72006061 72006168 + Gm22975 snRNA snRNA MGP_AJ_T0007345.1 MGP_AJ_G0006018.1 mouse_genomes_project 2 135276303 135277053 + Gm28214 lincRNA lincRNA MGP_AJ_T0058632.1 MGP_AJ_G0026707.1 mouse_genomes_project 2 154194682 154194739 - MGP_AJ_P0058632 Gm17581 protein_coding protein_coding MGP_AJ_T0013834.1 MGP_AJ_G0011929.1 mouse_genomes_project 2 153940028 153940351 - processed_pseudogene processed_pseudogene MGP_AJ_T0058264.1 MGP_AJ_G0026606.1 mouse_genomes_project 2 149819121 149838331 + MGP_AJ_P0058264 Fkbp1a protein_coding protein_coding MGP_AJ_T0058265.1 MGP_AJ_G0026606.1 mouse_genomes_project 2 149819223 149837467 + Fkbp1a protein_coding processed_transcript MGP_AJ_T0058266.1 MGP_AJ_G0026606.1 mouse_genomes_project 2 149819232 149836259 + Fkbp1a protein_coding processed_transcript MGP_AJ_T0058267.1 MGP_AJ_G0026606.1 mouse_genomes_project 2 149819232 149821316 + Fkbp1a protein_coding retained_intron MGP_AJ_T0058268.1 MGP_AJ_G0026606.1 mouse_genomes_project 2 149819253 149836467 + Fkbp1a protein_coding retained_intron MGP_AJ_T0058269.1 MGP_AJ_G0026606.1 mouse_genomes_project 2 149819259 149837581 + Fkbp1a protein_coding processed_transcript MGP_AJ_T0058270.1 MGP_AJ_G0026606.1 mouse_genomes_project 2 149819334 149834114 + Fkbp1a protein_coding processed_transcript MGP_AJ_T0058271.1 MGP_AJ_G0026606.1 mouse_genomes_project 2 149819375 149837292 + Fkbp1a protein_coding processed_transcript MGP_AJ_T0058272.1 MGP_AJ_G0026606.1 mouse_genomes_project 2 149820537 149838329 + MGP_AJ_P0058272 Fkbp1a protein_coding protein_coding MGP_AJ_T0058273.1 MGP_AJ_G0026606.1 mouse_genomes_project 2 149822048 149837352 + Fkbp1a protein_coding processed_transcript MGP_AJ_T0007300.1 MGP_AJ_G0005983.1 mouse_genomes_project 2 112659938 112984794 - lincRNA lincRNA MGP_AJ_T0057132.1 MGP_AJ_G0026338.1 mouse_genomes_project 2 118817583 118825998 + MGP_AJ_P0057132 Ccndbp1 protein_coding protein_coding MGP_AJ_T0057133.1 MGP_AJ_G0026338.1 mouse_genomes_project 2 118817612 118824229 + MGP_AJ_P0057133 Ccndbp1 protein_coding protein_coding MGP_AJ_T0057134.1 MGP_AJ_G0026338.1 mouse_genomes_project 2 118817628 118825998 + MGP_AJ_P0057134 Ccndbp1 protein_coding protein_coding MGP_AJ_T0057135.1 MGP_AJ_G0026338.1 mouse_genomes_project 2 118817647 118822045 + Ccndbp1 protein_coding processed_transcript MGP_AJ_T0057136.1 MGP_AJ_G0026338.1 mouse_genomes_project 2 118817652 118825607 + MGP_AJ_P0057136 Ccndbp1 protein_coding protein_coding MGP_AJ_T0057137.1 MGP_AJ_G0026338.1 mouse_genomes_project 2 118817884 118819756 + Ccndbp1 protein_coding retained_intron MGP_AJ_T0057138.1 MGP_AJ_G0026338.1 mouse_genomes_project 2 118820137 118820853 + Ccndbp1 protein_coding retained_intron MGP_AJ_T0057139.1 MGP_AJ_G0026338.1 mouse_genomes_project 2 118821587 118822057 + Ccndbp1 protein_coding processed_transcript MGP_AJ_T0056099.1 MGP_AJ_G0026105.1 mouse_genomes_project 2 88794687 88805928 - Nr1h3 protein_coding retained_intron MGP_AJ_T0056100.1 MGP_AJ_G0026105.1 mouse_genomes_project 2 88794687 88806019 - MGP_AJ_P0056100 Nr1h3 protein_coding protein_coding MGP_AJ_T0056101.1 MGP_AJ_G0026105.1 mouse_genomes_project 2 88794687 88805938 - MGP_AJ_P0056101 Nr1h3 protein_coding protein_coding MGP_AJ_T0056102.1 MGP_AJ_G0026105.1 mouse_genomes_project 2 88794718 88806054 - MGP_AJ_P0056102 Nr1h3 protein_coding protein_coding MGP_AJ_T0056103.1 MGP_AJ_G0026105.1 mouse_genomes_project 2 88794718 88805788 - MGP_AJ_P0056103 Nr1h3 protein_coding protein_coding MGP_AJ_T0056104.1 MGP_AJ_G0026105.1 mouse_genomes_project 2 88794832 88803663 - Nr1h3 protein_coding retained_intron MGP_AJ_T0056105.1 MGP_AJ_G0026105.1 mouse_genomes_project 2 88801289 88802040 - Nr1h3 protein_coding retained_intron MGP_AJ_T0056106.1 MGP_AJ_G0026105.1 mouse_genomes_project 2 88802949 88813745 - Nr1h3 protein_coding processed_transcript MGP_AJ_T0010491.1 MGP_AJ_G0008613.1 mouse_genomes_project 2 179238974 179239078 + Mir133a-2 miRNA miRNA MGP_AJ_T0010443.1 MGP_AJ_G0008565.1 mouse_genomes_project 2 110354592 110354732 + Gm44374 miRNA miRNA MGP_AJ_T0056635.1 MGP_AJ_G0026202.1 mouse_genomes_project 2 107546265 107556409 + MGP_AJ_P0056635 Lin7c protein_coding protein_coding MGP_AJ_T0056636.1 MGP_AJ_G0026202.1 mouse_genomes_project 2 107546282 107552145 + Lin7c protein_coding retained_intron MGP_AJ_T0052929.1 MGP_AJ_G0025387.1 mouse_genomes_project 2 21367974 21425012 - MGP_AJ_P0052929 Pax8 protein_coding protein_coding MGP_AJ_T0052930.1 MGP_AJ_G0025387.1 mouse_genomes_project 2 21368808 21370497 - Pax8 protein_coding retained_intron MGP_AJ_T0052931.1 MGP_AJ_G0025387.1 mouse_genomes_project 2 21368934 21424510 - MGP_AJ_P0052931 Pax8 protein_coding protein_coding MGP_AJ_T0052932.1 MGP_AJ_G0025387.1 mouse_genomes_project 2 21368962 21424510 - MGP_AJ_P0052932 Pax8 protein_coding protein_coding MGP_AJ_T0052933.1 MGP_AJ_G0025387.1 mouse_genomes_project 2 21377057 21424987 - MGP_AJ_P0052933 Pax8 protein_coding protein_coding MGP_AJ_T0052934.1 MGP_AJ_G0025387.1 mouse_genomes_project 2 21389695 21424628 - MGP_AJ_P0052934 Pax8 protein_coding protein_coding MGP_AJ_T0052935.1 MGP_AJ_G0025387.1 mouse_genomes_project 2 21391516 21394419 - Pax8 protein_coding processed_transcript MGP_AJ_T0052936.1 MGP_AJ_G0025387.1 mouse_genomes_project 2 21421303 21424987 - Pax8 protein_coding retained_intron MGP_AJ_T0058118.1 MGP_AJ_G0026561.1 mouse_genomes_project 2 144034175 144129477 + MGP_AJ_P0058118 protein_coding protein_coding MGP_AJ_T0058119.1 MGP_AJ_G0026561.1 mouse_genomes_project 2 144034175 144063646 + MGP_AJ_P0058119 protein_coding protein_coding MGP_AJ_T0058120.1 MGP_AJ_G0026561.1 mouse_genomes_project 2 144034196 144062874 + MGP_AJ_P0058120 protein_coding protein_coding MGP_AJ_T0058121.1 MGP_AJ_G0026561.1 mouse_genomes_project 2 144034196 144065640 + MGP_AJ_P0058121 protein_coding protein_coding MGP_AJ_T0058122.1 MGP_AJ_G0026561.1 mouse_genomes_project 2 144034199 144062729 + MGP_AJ_P0058122 protein_coding protein_coding MGP_AJ_T0058123.1 MGP_AJ_G0026561.1 mouse_genomes_project 2 144034205 144293574 + MGP_AJ_P0058123 protein_coding protein_coding MGP_AJ_T0058124.1 MGP_AJ_G0026561.1 mouse_genomes_project 2 144034207 144053044 + MGP_AJ_P0058124 protein_coding protein_coding MGP_AJ_T0058125.1 MGP_AJ_G0026561.1 mouse_genomes_project 2 144127902 144180574 + protein_coding processed_transcript MGP_AJ_T0058126.1 MGP_AJ_G0026561.1 mouse_genomes_project 2 144131720 144220086 + protein_coding retained_intron MGP_AJ_T0058127.1 MGP_AJ_G0026561.1 mouse_genomes_project 2 144131852 144220217 + MGP_AJ_P0058127 protein_coding protein_coding MGP_AJ_T0058128.1 MGP_AJ_G0026561.1 mouse_genomes_project 2 144133655 144293570 + protein_coding processed_transcript MGP_AJ_T0058129.1 MGP_AJ_G0026561.1 mouse_genomes_project 2 144239533 144293493 + protein_coding processed_transcript MGP_AJ_T0058130.1 MGP_AJ_G0026561.1 mouse_genomes_project 2 144292797 144293570 + protein_coding processed_transcript MGP_AJ_T0058131.1 MGP_AJ_G0026561.1 mouse_genomes_project 2 144293145 144293328 + MGP_AJ_P0058131 protein_coding protein_coding MGP_AJ_T0055775.1 MGP_AJ_G0025924.1 mouse_genomes_project 2 83526090 83527050 - MGP_AJ_P0055775 protein_coding protein_coding MGP_AJ_T0054501.1 MGP_AJ_G0025647.1 mouse_genomes_project 2 33812469 33813405 + MGP_AJ_P0054501 Olfr345 protein_coding protein_coding MGP_AJ_T0056731.1 MGP_AJ_G0026257.1 mouse_genomes_project 2 111069828 111468008 + MGP_AJ_P0056731 Fmn1 protein_coding protein_coding MGP_AJ_T0056732.1 MGP_AJ_G0026257.1 mouse_genomes_project 2 111069863 111242146 + Fmn1 protein_coding processed_transcript MGP_AJ_T0056733.1 MGP_AJ_G0026257.1 mouse_genomes_project 2 111069874 111461113 + MGP_AJ_P0056733 Fmn1 protein_coding protein_coding MGP_AJ_T0056734.1 MGP_AJ_G0026257.1 mouse_genomes_project 2 111106702 111460864 + MGP_AJ_P0056734 Fmn1 protein_coding protein_coding MGP_AJ_T0056735.1 MGP_AJ_G0026257.1 mouse_genomes_project 2 111184622 111461113 + MGP_AJ_P0056735 Fmn1 protein_coding protein_coding MGP_AJ_T0056736.1 MGP_AJ_G0026257.1 mouse_genomes_project 2 111435483 111443788 + Fmn1 protein_coding processed_transcript MGP_AJ_T0056737.1 MGP_AJ_G0026257.1 mouse_genomes_project 2 111435498 111461110 + Fmn1 protein_coding processed_transcript MGP_AJ_T0056738.1 MGP_AJ_G0026257.1 mouse_genomes_project 2 111435498 111460992 + Fmn1 protein_coding processed_transcript MGP_AJ_T0056739.1 MGP_AJ_G0026257.1 mouse_genomes_project 2 111459928 111460988 + Fmn1 protein_coding processed_transcript MGP_AJ_T0013560.1 MGP_AJ_G0011655.1 mouse_genomes_project 2 56258434 56260212 - processed_pseudogene processed_pseudogene MGP_AJ_T0102480.1 MGP_AJ_G0040222.1 mouse_genomes_project 2 83592225 83593169 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0001057.1 MGP_AJ_G0000988.1 mouse_genomes_project 2 21827182 21828988 - TEC TEC MGP_AJ_T0003999.1 MGP_AJ_G0003562.1 mouse_genomes_project 2 67795209 67867695 - Gad1os antisense antisense MGP_AJ_T0004000.1 MGP_AJ_G0003562.1 mouse_genomes_project 2 67795516 67796740 - Gad1os antisense antisense MGP_AJ_T0007240.1 MGP_AJ_G0005934.1 mouse_genomes_project 2 72076820 72078663 + Gm14396 lincRNA lincRNA MGP_AJ_T0007241.1 MGP_AJ_G0005934.1 mouse_genomes_project 2 72076901 72078663 + Gm14396 lincRNA lincRNA MGP_AJ_T0058207.1 MGP_AJ_G0026591.1 mouse_genomes_project 2 148365742 148366170 + MGP_AJ_P0058207 Gm10130 protein_coding protein_coding MGP_AJ_T0055132.1 MGP_AJ_G0025772.1 mouse_genomes_project 2 66468172 66480629 - MGP_AJ_P0055132 Spc25 protein_coding protein_coding MGP_AJ_T0055133.1 MGP_AJ_G0025772.1 mouse_genomes_project 2 66468176 66480940 - MGP_AJ_P0055133 Spc25 protein_coding protein_coding MGP_AJ_T0055134.1 MGP_AJ_G0025772.1 mouse_genomes_project 2 66471433 66479923 - MGP_AJ_P0055134 Spc25 protein_coding protein_coding MGP_AJ_T0055135.1 MGP_AJ_G0025772.1 mouse_genomes_project 2 66471476 66480963 - MGP_AJ_P0055135 Spc25 protein_coding protein_coding MGP_AJ_T0055136.1 MGP_AJ_G0025772.1 mouse_genomes_project 2 66472940 66480906 - Spc25 protein_coding processed_transcript MGP_AJ_T0055137.1 MGP_AJ_G0025772.1 mouse_genomes_project 2 66474216 66480008 - Spc25 protein_coding processed_transcript MGP_AJ_T0055138.1 MGP_AJ_G0025772.1 mouse_genomes_project 2 66480420 66480962 - Spc25 protein_coding processed_transcript MGP_AJ_T0055968.1 MGP_AJ_G0026080.1 mouse_genomes_project 2 87612907 87613834 - MGP_AJ_P0055968 Olfr1264 protein_coding protein_coding MGP_AJ_T0054995.1 MGP_AJ_G0025745.1 mouse_genomes_project 2 59637049 59718808 - MGP_AJ_P0054995 Dpp4 protein_coding protein_coding MGP_AJ_T0054996.1 MGP_AJ_G0025745.1 mouse_genomes_project 2 59641412 59651926 - Dpp4 protein_coding retained_intron MGP_AJ_T0054997.1 MGP_AJ_G0025745.1 mouse_genomes_project 2 59658884 59664337 - Dpp4 protein_coding processed_transcript MGP_AJ_T0054998.1 MGP_AJ_G0025745.1 mouse_genomes_project 2 59671353 59684888 - Dpp4 protein_coding retained_intron MGP_AJ_T0054999.1 MGP_AJ_G0025745.1 mouse_genomes_project 2 59680892 59718598 - Dpp4 protein_coding retained_intron MGP_AJ_T0055000.1 MGP_AJ_G0025745.1 mouse_genomes_project 2 59714278 59718436 - Dpp4 protein_coding processed_transcript MGP_AJ_T0058937.1 MGP_AJ_G0026758.1 mouse_genomes_project 2 156821421 156835881 + Lbp protein_coding processed_transcript MGP_AJ_T0058938.1 MGP_AJ_G0026758.1 mouse_genomes_project 2 156821421 156825430 + MGP_AJ_P0058938 Lbp protein_coding protein_coding MGP_AJ_T0058939.1 MGP_AJ_G0026758.1 mouse_genomes_project 2 156821421 156847735 + MGP_AJ_P0058939 Lbp protein_coding protein_coding MGP_AJ_T0058940.1 MGP_AJ_G0026758.1 mouse_genomes_project 2 156821540 156833537 + Lbp protein_coding retained_intron MGP_AJ_T0058941.1 MGP_AJ_G0026758.1 mouse_genomes_project 2 156829129 156839596 + MGP_AJ_P0058941 Lbp protein_coding protein_coding MGP_AJ_T0013550.1 MGP_AJ_G0011645.1 mouse_genomes_project 2 53297401 53299701 - processed_pseudogene processed_pseudogene MGP_AJ_T0011486.1 MGP_AJ_G0009608.1 mouse_genomes_project 2 5457582 5457873 - Gm24534 misc_RNA misc_RNA MGP_AJ_T0101051.1 MGP_AJ_G0039017.1 mouse_genomes_project 2 94749019 94749142 + Gm22957 snoRNA snoRNA MGP_AJ_T0098942.1 MGP_AJ_G0036920.1 mouse_genomes_project 2 1152010 1154570 + Gm37107 sense_intronic sense_intronic MGP_AJ_T0055764.1 MGP_AJ_G0025914.1 mouse_genomes_project 2 83254135 83255083 + MGP_AJ_P0055764 Olfr1022 protein_coding protein_coding MGP_AJ_T0056802.1 MGP_AJ_G0026273.1 mouse_genomes_project 2 115970868 116024603 - MGP_AJ_P0056802 Fsip1 protein_coding protein_coding MGP_AJ_T0056803.1 MGP_AJ_G0026273.1 mouse_genomes_project 2 116011214 116024593 - MGP_AJ_P0056803 Fsip1 protein_coding protein_coding MGP_AJ_T0055161.1 MGP_AJ_G0025779.1 mouse_genomes_project 2 66981871 67007677 - MGP_AJ_P0055161 Fastkd1 protein_coding protein_coding MGP_AJ_T0055162.1 MGP_AJ_G0025779.1 mouse_genomes_project 2 66981993 67007529 - MGP_AJ_P0055162 Fastkd1 protein_coding protein_coding MGP_AJ_T0055163.1 MGP_AJ_G0025779.1 mouse_genomes_project 2 67000157 67008569 - Fastkd1 protein_coding retained_intron MGP_AJ_T0055164.1 MGP_AJ_G0025779.1 mouse_genomes_project 2 67004825 67008587 - Fastkd1 protein_coding retained_intron MGP_AJ_T0057868.1 MGP_AJ_G0026503.1 mouse_genomes_project 2 130285227 130293624 - MGP_AJ_P0057868 Tmem230 protein_coding protein_coding MGP_AJ_T0057869.1 MGP_AJ_G0026503.1 mouse_genomes_project 2 130285227 130293586 - MGP_AJ_P0057869 Tmem230 protein_coding protein_coding MGP_AJ_T0057870.1 MGP_AJ_G0026503.1 mouse_genomes_project 2 130285227 130293471 - MGP_AJ_P0057870 Tmem230 protein_coding protein_coding MGP_AJ_T0057871.1 MGP_AJ_G0026503.1 mouse_genomes_project 2 130285229 130293605 - MGP_AJ_P0057871 Tmem230 protein_coding protein_coding MGP_AJ_T0057872.1 MGP_AJ_G0026503.1 mouse_genomes_project 2 130291136 130293576 - Tmem230 protein_coding processed_transcript MGP_AJ_T0057873.1 MGP_AJ_G0026503.1 mouse_genomes_project 2 130291668 130293573 - Tmem230 protein_coding retained_intron MGP_AJ_T0013463.1 MGP_AJ_G0011558.1 mouse_genomes_project 2 20444664 20445112 + processed_pseudogene processed_pseudogene MGP_AJ_T0013575.1 MGP_AJ_G0011670.1 mouse_genomes_project 2 62570482 62571492 + processed_pseudogene processed_pseudogene MGP_AJ_T0010427.1 MGP_AJ_G0008549.1 mouse_genomes_project 2 89020169 89020266 - Gm22071 miRNA miRNA MGP_AJ_T0058786.1 MGP_AJ_G0026729.1 mouse_genomes_project 2 154793202 154851336 + MGP_AJ_P0058786 Cnbd2 protein_coding protein_coding MGP_AJ_T0058787.1 MGP_AJ_G0026729.1 mouse_genomes_project 2 154793481 154820118 + Cnbd2 protein_coding processed_transcript MGP_AJ_T0058788.1 MGP_AJ_G0026729.1 mouse_genomes_project 2 154793520 154801851 + Cnbd2 protein_coding retained_intron MGP_AJ_T0058789.1 MGP_AJ_G0026729.1 mouse_genomes_project 2 154793536 154851339 + MGP_AJ_P0058789 Cnbd2 protein_coding protein_coding MGP_AJ_T0058790.1 MGP_AJ_G0026729.1 mouse_genomes_project 2 154815095 154820719 + Cnbd2 protein_coding processed_transcript MGP_AJ_T0059377.1 MGP_AJ_G0026868.1 mouse_genomes_project 2 165392056 165393914 + MGP_AJ_P0059377 protein_coding protein_coding MGP_AJ_T0059378.1 MGP_AJ_G0026868.1 mouse_genomes_project 2 165393292 165400766 + MGP_AJ_P0059378 protein_coding protein_coding MGP_AJ_T0059380.1 MGP_AJ_G0026868.1 mouse_genomes_project 2 165393524 165396213 + protein_coding processed_transcript MGP_AJ_T0007301.1 MGP_AJ_G0005984.1 mouse_genomes_project 2 112909490 112911726 + Gm28493 lincRNA lincRNA MGP_AJ_T0056812.1 MGP_AJ_G0026276.1 mouse_genomes_project 2 116246142 116249273 - MGP_AJ_P0056812 Srp14 protein_coding protein_coding MGP_AJ_T0056813.1 MGP_AJ_G0026276.1 mouse_genomes_project 2 116246143 116248400 - Srp14 protein_coding processed_transcript MGP_AJ_T0056814.1 MGP_AJ_G0026276.1 mouse_genomes_project 2 116246153 116249210 - Srp14 protein_coding processed_transcript MGP_AJ_T0056815.1 MGP_AJ_G0026276.1 mouse_genomes_project 2 116248081 116249197 - MGP_AJ_P0056815 Srp14 protein_coding protein_coding MGP_AJ_T0052662.1 MGP_AJ_G0025335.1 mouse_genomes_project 2 10738882 10879387 - MGP_AJ_P0052662 St8sia6 protein_coding protein_coding MGP_AJ_T0052663.1 MGP_AJ_G0025335.1 mouse_genomes_project 2 10745015 10878616 - St8sia6 protein_coding processed_transcript MGP_AJ_T0055720.1 MGP_AJ_G0025892.1 mouse_genomes_project 2 82372976 82378488 + Prg3 protein_coding processed_transcript MGP_AJ_T0055721.1 MGP_AJ_G0025892.1 mouse_genomes_project 2 82372976 82378587 + MGP_AJ_P0055721 Prg3 protein_coding protein_coding MGP_AJ_T0004110.1 MGP_AJ_G0003634.1 mouse_genomes_project 2 141626669 141639001 - Pcsk2os1 antisense antisense MGP_AJ_T0004111.1 MGP_AJ_G0003634.1 mouse_genomes_project 2 141629148 141637144 - Pcsk2os1 antisense antisense MGP_AJ_T0053419.1 MGP_AJ_G0025471.1 mouse_genomes_project 2 23650276 23658305 + MGP_AJ_P0053419 Fam69b protein_coding protein_coding MGP_AJ_T0053420.1 MGP_AJ_G0025471.1 mouse_genomes_project 2 23650313 23654815 + Fam69b protein_coding processed_transcript MGP_AJ_T0053421.1 MGP_AJ_G0025471.1 mouse_genomes_project 2 23656010 23656833 + Fam69b protein_coding processed_transcript MGP_AJ_T0053484.1 MGP_AJ_G0025484.1 mouse_genomes_project 2 24045578 24052138 - Slc2a6 protein_coding processed_transcript MGP_AJ_T0053485.1 MGP_AJ_G0025484.1 mouse_genomes_project 2 24045578 24052162 - Slc2a6 protein_coding processed_transcript MGP_AJ_T0053486.1 MGP_AJ_G0025484.1 mouse_genomes_project 2 24045578 24052125 - MGP_AJ_P0053486 Slc2a6 protein_coding protein_coding MGP_AJ_T0053487.1 MGP_AJ_G0025484.1 mouse_genomes_project 2 24045578 24052214 - MGP_AJ_P0053487 Slc2a6 protein_coding protein_coding MGP_AJ_T0053488.1 MGP_AJ_G0025484.1 mouse_genomes_project 2 24048283 24050207 - Slc2a6 protein_coding processed_transcript MGP_AJ_T0053489.1 MGP_AJ_G0025484.1 mouse_genomes_project 2 24050303 24052207 - MGP_AJ_P0053489 Slc2a6 protein_coding protein_coding MGP_AJ_T0013812.1 MGP_AJ_G0011907.1 mouse_genomes_project 2 146545848 146546083 - processed_pseudogene processed_pseudogene MGP_AJ_T0055893.1 MGP_AJ_G0026027.1 mouse_genomes_project 2 86358245 86362952 - MGP_AJ_P0055893 protein_coding protein_coding MGP_AJ_T0057288.1 MGP_AJ_G0026363.1 mouse_genomes_project 2 119808197 119877863 + MGP_AJ_P0057288 Ctdspl2 protein_coding protein_coding MGP_AJ_T0057289.1 MGP_AJ_G0026363.1 mouse_genomes_project 2 119808612 119876611 + MGP_AJ_P0057289 Ctdspl2 protein_coding protein_coding MGP_AJ_T0057290.1 MGP_AJ_G0026363.1 mouse_genomes_project 2 119808661 119856681 + Ctdspl2 protein_coding retained_intron MGP_AJ_T0057291.1 MGP_AJ_G0026363.1 mouse_genomes_project 2 119808681 119876836 + Ctdspl2 protein_coding processed_transcript MGP_AJ_T0057292.1 MGP_AJ_G0026363.1 mouse_genomes_project 2 119808687 119856278 + Ctdspl2 protein_coding processed_transcript MGP_AJ_T0057293.1 MGP_AJ_G0026363.1 mouse_genomes_project 2 119808687 119852904 + Ctdspl2 protein_coding retained_intron MGP_AJ_T0057294.1 MGP_AJ_G0026363.1 mouse_genomes_project 2 119808860 119874950 + MGP_AJ_P0057294 Ctdspl2 protein_coding protein_coding MGP_AJ_T0057295.1 MGP_AJ_G0026363.1 mouse_genomes_project 2 119820810 119877812 + MGP_AJ_P0057295 Ctdspl2 protein_coding protein_coding MGP_AJ_T0057296.1 MGP_AJ_G0026363.1 mouse_genomes_project 2 119831291 119867183 + Ctdspl2 protein_coding retained_intron MGP_AJ_T0101768.1 MGP_AJ_G0039690.1 mouse_genomes_project 2 50076265 50076650 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0056805.1 MGP_AJ_G0026275.1 mouse_genomes_project 2 116159388 116199535 + MGP_AJ_P0056805 Eif2ak4 protein_coding protein_coding MGP_AJ_T0056806.1 MGP_AJ_G0026275.1 mouse_genomes_project 2 116159479 116245352 + MGP_AJ_P0056806 Eif2ak4 protein_coding protein_coding MGP_AJ_T0056807.1 MGP_AJ_G0026275.1 mouse_genomes_project 2 116159617 116245526 + MGP_AJ_P0056807 Eif2ak4 protein_coding protein_coding MGP_AJ_T0056808.1 MGP_AJ_G0026275.1 mouse_genomes_project 2 116159882 116245523 + MGP_AJ_P0056808 Eif2ak4 protein_coding protein_coding MGP_AJ_T0056809.1 MGP_AJ_G0026275.1 mouse_genomes_project 2 116159882 116245524 + MGP_AJ_P0056809 Eif2ak4 protein_coding protein_coding MGP_AJ_T0056810.1 MGP_AJ_G0026275.1 mouse_genomes_project 2 116210222 116222695 + MGP_AJ_P0056810 Eif2ak4 protein_coding protein_coding MGP_AJ_T0056811.1 MGP_AJ_G0026275.1 mouse_genomes_project 2 116227519 116232344 + Eif2ak4 protein_coding processed_transcript MGP_AJ_T0007303.1 MGP_AJ_G0005986.1 mouse_genomes_project 2 113109820 113112401 + Gm13976 lincRNA lincRNA MGP_AJ_T0013502.1 MGP_AJ_G0011597.1 mouse_genomes_project 2 36007218 36007824 + processed_pseudogene processed_pseudogene MGP_AJ_T0052787.1 MGP_AJ_G0025359.1 mouse_genomes_project 2 16387282 16408980 + Msrb2 protein_coding processed_transcript MGP_AJ_T0052788.1 MGP_AJ_G0025359.1 mouse_genomes_project 2 16387478 16420664 + MGP_AJ_P0052788 Msrb2 protein_coding protein_coding MGP_AJ_T0052789.1 MGP_AJ_G0025359.1 mouse_genomes_project 2 16387510 16419008 + Msrb2 protein_coding processed_transcript MGP_AJ_T0052790.1 MGP_AJ_G0025359.1 mouse_genomes_project 2 16387683 16419952 + Msrb2 protein_coding processed_transcript MGP_AJ_T0055118.1 MGP_AJ_G0025769.1 mouse_genomes_project 2 65938871 65967621 + MGP_AJ_P0055118 4932414N04Rik protein_coding protein_coding MGP_AJ_T0055119.1 MGP_AJ_G0025769.1 mouse_genomes_project 2 65940269 66021946 + MGP_AJ_P0055119 4932414N04Rik protein_coding protein_coding MGP_AJ_T0055120.1 MGP_AJ_G0025769.1 mouse_genomes_project 2 65940298 65951388 + 4932414N04Rik protein_coding processed_transcript MGP_AJ_T0055121.1 MGP_AJ_G0025769.1 mouse_genomes_project 2 65942227 66021944 + MGP_AJ_P0055121 4932414N04Rik protein_coding protein_coding MGP_AJ_T0055122.1 MGP_AJ_G0025769.1 mouse_genomes_project 2 65992750 65993825 + 4932414N04Rik protein_coding retained_intron MGP_AJ_T0007190.1 MGP_AJ_G0005892.1 mouse_genomes_project 2 33418959 33419685 + Gm13431 lincRNA lincRNA MGP_AJ_T0007191.1 MGP_AJ_G0005892.1 mouse_genomes_project 2 33419007 33425131 + Gm13431 lincRNA lincRNA MGP_AJ_T0007192.1 MGP_AJ_G0005892.1 mouse_genomes_project 2 33422677 33425063 + Gm13431 lincRNA lincRNA MGP_AJ_T0013780.1 MGP_AJ_G0011875.1 mouse_genomes_project 2 137967867 137968295 + processed_pseudogene processed_pseudogene MGP_AJ_T0053553.1 MGP_AJ_G0025498.1 mouse_genomes_project 2 25520789 25524633 - 1700007K13Rik protein_coding processed_transcript MGP_AJ_T0053554.1 MGP_AJ_G0025498.1 mouse_genomes_project 2 25520789 25525113 - MGP_AJ_P0053554 1700007K13Rik protein_coding protein_coding MGP_AJ_T0053555.1 MGP_AJ_G0025498.1 mouse_genomes_project 2 25521136 25525097 - MGP_AJ_P0053555 1700007K13Rik protein_coding protein_coding MGP_AJ_T0007176.1 MGP_AJ_G0005881.1 mouse_genomes_project 2 27723168 27783893 + 9330198N18Rik lincRNA lincRNA MGP_AJ_T0004170.1 MGP_AJ_G0003681.1 mouse_genomes_project 2 165811874 165813098 + Gm14291 antisense antisense MGP_AJ_T0013568.1 MGP_AJ_G0011663.1 mouse_genomes_project 2 58322927 58323547 - processed_pseudogene processed_pseudogene MGP_AJ_T0056865.1 MGP_AJ_G0026287.1 mouse_genomes_project 2 116669346 116685264 + MGP_AJ_P0056865 Bahd1 protein_coding protein_coding MGP_AJ_T0056866.1 MGP_AJ_G0026287.1 mouse_genomes_project 2 116670422 116693375 + MGP_AJ_P0056866 Bahd1 protein_coding protein_coding MGP_AJ_T0056867.1 MGP_AJ_G0026287.1 mouse_genomes_project 2 116684686 116693366 + MGP_AJ_P0056867 Bahd1 protein_coding unknown_likely_coding MGP_AJ_T0053435.1 MGP_AJ_G0025476.1 mouse_genomes_project 2 23938295 23940850 + MGP_AJ_P0053435 Rpl7a protein_coding protein_coding MGP_AJ_T0053436.1 MGP_AJ_G0025476.1 mouse_genomes_project 2 23938348 23940589 + Rpl7a protein_coding processed_transcript MGP_AJ_T0053437.1 MGP_AJ_G0025476.1 mouse_genomes_project 2 23938352 23940850 + Rpl7a protein_coding processed_transcript MGP_AJ_T0053438.1 MGP_AJ_G0025476.1 mouse_genomes_project 2 23938537 23940850 + Rpl7a protein_coding processed_transcript MGP_AJ_T0053439.1 MGP_AJ_G0025476.1 mouse_genomes_project 2 23939723 23940850 + Rpl7a protein_coding processed_transcript MGP_AJ_T0053440.1 MGP_AJ_G0025476.1 mouse_genomes_project 2 23940150 23940850 + Rpl7a protein_coding processed_transcript MGP_AJ_T0053441.1 MGP_AJ_G0025476.1 mouse_genomes_project 2 23940202 23940744 + Rpl7a protein_coding processed_transcript MGP_AJ_T0053227.1 MGP_AJ_G0025435.1 mouse_genomes_project 2 22571427 22598034 - MGP_AJ_P0053227 Rabl6 protein_coding protein_coding MGP_AJ_T0053228.1 MGP_AJ_G0025435.1 mouse_genomes_project 2 22572520 22578810 - Rabl6 protein_coding processed_transcript MGP_AJ_T0053229.1 MGP_AJ_G0025435.1 mouse_genomes_project 2 22572520 22597978 - Rabl6 protein_coding processed_transcript MGP_AJ_T0053230.1 MGP_AJ_G0025435.1 mouse_genomes_project 2 22572544 22573470 - Rabl6 protein_coding processed_transcript MGP_AJ_T0053231.1 MGP_AJ_G0025435.1 mouse_genomes_project 2 22573598 22574233 - Rabl6 protein_coding processed_transcript MGP_AJ_T0053232.1 MGP_AJ_G0025435.1 mouse_genomes_project 2 22574083 22575745 - Rabl6 protein_coding processed_transcript MGP_AJ_T0053233.1 MGP_AJ_G0025435.1 mouse_genomes_project 2 22575882 22577597 - Rabl6 protein_coding processed_transcript MGP_AJ_T0053234.1 MGP_AJ_G0025435.1 mouse_genomes_project 2 22575964 22597998 - Rabl6 protein_coding processed_transcript MGP_AJ_T0053235.1 MGP_AJ_G0025435.1 mouse_genomes_project 2 22585976 22597969 - Rabl6 protein_coding processed_transcript MGP_AJ_T0053652.1 MGP_AJ_G0025517.1 mouse_genomes_project 2 26689035 26809271 + MGP_AJ_P0053652 Rapgef1 protein_coding protein_coding MGP_AJ_T0053653.1 MGP_AJ_G0025517.1 mouse_genomes_project 2 26689064 26809893 + MGP_AJ_P0053653 Rapgef1 protein_coding protein_coding MGP_AJ_T0053654.1 MGP_AJ_G0025517.1 mouse_genomes_project 2 26689239 26807235 + MGP_AJ_P0053654 Rapgef1 protein_coding nonsense_mediated_decay MGP_AJ_T0053655.1 MGP_AJ_G0025517.1 mouse_genomes_project 2 26689297 26809486 + MGP_AJ_P0053655 Rapgef1 protein_coding protein_coding MGP_AJ_T0053656.1 MGP_AJ_G0025517.1 mouse_genomes_project 2 26799692 26804756 + Rapgef1 protein_coding processed_transcript MGP_AJ_T0053657.1 MGP_AJ_G0025517.1 mouse_genomes_project 2 26801468 26803133 + Rapgef1 protein_coding retained_intron MGP_AJ_T0101064.1 MGP_AJ_G0039030.1 mouse_genomes_project 2 128107534 128107621 + Gm22424 snoRNA snoRNA MGP_AJ_T0057322.1 MGP_AJ_G0026376.1 mouse_genomes_project 2 120224147 120242223 - MGP_AJ_P0057322 protein_coding protein_coding MGP_AJ_T0057323.1 MGP_AJ_G0026376.1 mouse_genomes_project 2 120224148 120244318 - MGP_AJ_P0057323 protein_coding protein_coding MGP_AJ_T0057324.1 MGP_AJ_G0026376.1 mouse_genomes_project 2 120224383 120244232 - MGP_AJ_P0057324 protein_coding protein_coding MGP_AJ_T0057325.1 MGP_AJ_G0026376.1 mouse_genomes_project 2 120224383 120244562 - MGP_AJ_P0057325 protein_coding protein_coding MGP_AJ_T0057326.1 MGP_AJ_G0026376.1 mouse_genomes_project 2 120224383 120234838 - MGP_AJ_P0057326 protein_coding protein_coding MGP_AJ_T0057327.1 MGP_AJ_G0026376.1 mouse_genomes_project 2 120224406 120244532 - MGP_AJ_P0057327 protein_coding protein_coding MGP_AJ_T0057328.1 MGP_AJ_G0026376.1 mouse_genomes_project 2 120224454 120233515 - MGP_AJ_P0057328 protein_coding protein_coding MGP_AJ_T0057329.1 MGP_AJ_G0026376.1 mouse_genomes_project 2 120224454 120233489 - MGP_AJ_P0057329 protein_coding protein_coding MGP_AJ_T0057330.1 MGP_AJ_G0026376.1 mouse_genomes_project 2 120224643 120232469 - MGP_AJ_P0057330 protein_coding protein_coding MGP_AJ_T0057331.1 MGP_AJ_G0026376.1 mouse_genomes_project 2 120224759 120229370 - protein_coding retained_intron MGP_AJ_T0058592.1 MGP_AJ_G0026701.1 mouse_genomes_project 2 153944411 153969060 - MGP_AJ_P0058592 Ggt7 protein_coding protein_coding MGP_AJ_T0058593.1 MGP_AJ_G0026701.1 mouse_genomes_project 2 153948916 153953192 - Ggt7 protein_coding retained_intron MGP_AJ_T0058594.1 MGP_AJ_G0026701.1 mouse_genomes_project 2 153949985 153957315 - Ggt7 protein_coding retained_intron MGP_AJ_T0058595.1 MGP_AJ_G0026701.1 mouse_genomes_project 2 153954832 153961166 - MGP_AJ_P0058595 Ggt7 protein_coding protein_coding MGP_AJ_T0058596.1 MGP_AJ_G0026701.1 mouse_genomes_project 2 153958954 153972471 - MGP_AJ_P0058596 Ggt7 protein_coding protein_coding MGP_AJ_T0055239.1 MGP_AJ_G0025794.1 mouse_genomes_project 2 68272103 68364103 - MGP_AJ_P0055239 Mettl8 protein_coding protein_coding MGP_AJ_T0055240.1 MGP_AJ_G0025794.1 mouse_genomes_project 2 68272110 68364131 - MGP_AJ_P0055240 Mettl8 protein_coding nonsense_mediated_decay MGP_AJ_T0055241.1 MGP_AJ_G0025794.1 mouse_genomes_project 2 68272110 68364131 - MGP_AJ_P0055241 Mettl8 protein_coding nonsense_mediated_decay MGP_AJ_T0055242.1 MGP_AJ_G0025794.1 mouse_genomes_project 2 68272110 68364131 - MGP_AJ_P0055242 Mettl8 protein_coding protein_coding MGP_AJ_T0055243.1 MGP_AJ_G0025794.1 mouse_genomes_project 2 68273710 68280990 - MGP_AJ_P0055243 Mettl8 protein_coding protein_coding MGP_AJ_T0055244.1 MGP_AJ_G0025794.1 mouse_genomes_project 2 68274028 68290409 - MGP_AJ_P0055244 Mettl8 protein_coding nonsense_mediated_decay MGP_AJ_T0055245.1 MGP_AJ_G0025794.1 mouse_genomes_project 2 68274595 68283780 - Mettl8 protein_coding retained_intron MGP_AJ_T0055246.1 MGP_AJ_G0025794.1 mouse_genomes_project 2 68287070 68364120 - MGP_AJ_P0055246 Mettl8 protein_coding protein_coding MGP_AJ_T0055247.1 MGP_AJ_G0025794.1 mouse_genomes_project 2 68289277 68364131 - Mettl8 protein_coding retained_intron MGP_AJ_T0055248.1 MGP_AJ_G0025794.1 mouse_genomes_project 2 68301536 68326727 - Mettl8 protein_coding retained_intron MGP_AJ_T0003900.1 MGP_AJ_G0003485.1 mouse_genomes_project 2 9378949 9390075 + E030013I19Rik antisense antisense MGP_AJ_T0003901.1 MGP_AJ_G0003485.1 mouse_genomes_project 2 9379322 9391090 + E030013I19Rik antisense antisense MGP_AJ_T0054183.1 MGP_AJ_G0025592.1 mouse_genomes_project 2 29772410 29785688 + MGP_AJ_P0054183 Ak1 protein_coding protein_coding MGP_AJ_T0054184.1 MGP_AJ_G0025592.1 mouse_genomes_project 2 29776087 29785684 + MGP_AJ_P0054184 Ak1 protein_coding protein_coding MGP_AJ_T0054185.1 MGP_AJ_G0025592.1 mouse_genomes_project 2 29776088 29781799 + MGP_AJ_P0054185 Ak1 protein_coding protein_coding MGP_AJ_T0054186.1 MGP_AJ_G0025592.1 mouse_genomes_project 2 29779023 29781762 + MGP_AJ_P0054186 Ak1 protein_coding protein_coding MGP_AJ_T0054187.1 MGP_AJ_G0025592.1 mouse_genomes_project 2 29780137 29785682 + MGP_AJ_P0054187 Ak1 protein_coding protein_coding MGP_AJ_T0054188.1 MGP_AJ_G0025592.1 mouse_genomes_project 2 29780154 29784030 + Ak1 protein_coding retained_intron MGP_AJ_T0101099.1 MGP_AJ_G0039065.1 mouse_genomes_project 2 166970467 166970604 + Gm22704 snoRNA snoRNA MGP_AJ_T0007394.1 MGP_AJ_G0006060.1 mouse_genomes_project 2 164759291 164760361 - Gm11466 lincRNA lincRNA MGP_AJ_T0013846.1 MGP_AJ_G0011941.1 mouse_genomes_project 2 155381956 155382500 + processed_pseudogene processed_pseudogene MGP_AJ_T0007160.1 MGP_AJ_G0005870.1 mouse_genomes_project 2 21494835 21516009 - Gm13417 lincRNA lincRNA MGP_AJ_T0055786.1 MGP_AJ_G0025935.1 mouse_genomes_project 2 83721508 83722450 - MGP_AJ_P0055786 Olfr1053 protein_coding protein_coding MGP_AJ_T0057909.1 MGP_AJ_G0026511.1 mouse_genomes_project 2 130872266 130902705 + MGP_AJ_P0057909 Mcm8 protein_coding protein_coding MGP_AJ_T0057910.1 MGP_AJ_G0026511.1 mouse_genomes_project 2 130872266 130902403 + MGP_AJ_P0057910 Mcm8 protein_coding protein_coding MGP_AJ_T0057911.1 MGP_AJ_G0026511.1 mouse_genomes_project 2 130872349 130874151 + Mcm8 protein_coding processed_transcript MGP_AJ_T0052769.1 MGP_AJ_G0025354.1 mouse_genomes_project 2 15730344 15741268 + MGP_AJ_P0052769 Bmi1 protein_coding protein_coding MGP_AJ_T0052770.1 MGP_AJ_G0025354.1 mouse_genomes_project 2 15730549 15736472 + Bmi1 protein_coding processed_transcript MGP_AJ_T0052771.1 MGP_AJ_G0025354.1 mouse_genomes_project 2 15731917 15737783 + MGP_AJ_P0052771 Bmi1 protein_coding protein_coding MGP_AJ_T0052772.1 MGP_AJ_G0025354.1 mouse_genomes_project 2 15734478 15740769 + MGP_AJ_P0052772 Bmi1 protein_coding protein_coding MGP_AJ_T0052773.1 MGP_AJ_G0025354.1 mouse_genomes_project 2 15734480 15738120 + MGP_AJ_P0052773 Bmi1 protein_coding protein_coding MGP_AJ_T0052774.1 MGP_AJ_G0025354.1 mouse_genomes_project 2 15735100 15737137 + MGP_AJ_P0052774 Bmi1 protein_coding protein_coding MGP_AJ_T0052775.1 MGP_AJ_G0025354.1 mouse_genomes_project 2 15735213 15736963 + MGP_AJ_P0052775 Bmi1 protein_coding protein_coding MGP_AJ_T0057019.1 MGP_AJ_G0026323.1 mouse_genomes_project 2 118077721 118100566 - MGP_AJ_P0057019 Pla2g4d protein_coding protein_coding MGP_AJ_T0013573.1 MGP_AJ_G0011668.1 mouse_genomes_project 2 61862039 61862817 - processed_pseudogene processed_pseudogene MGP_AJ_T0017802.1 MGP_AJ_G0015418.1 mouse_genomes_project 2 88650774 88661218 - Gm13778 processed_transcript processed_transcript MGP_AJ_T0017803.1 MGP_AJ_G0015418.1 mouse_genomes_project 2 88651077 88661233 - Gm13778 processed_transcript processed_transcript MGP_AJ_T0007184.1 MGP_AJ_G0005887.1 mouse_genomes_project 2 31165498 31167576 + Gm13404 lincRNA lincRNA MGP_AJ_T0057848.1 MGP_AJ_G0026498.1 mouse_genomes_project 2 129962229 129979230 + MGP_AJ_P0057848 Prnp protein_coding protein_coding MGP_AJ_T0057849.1 MGP_AJ_G0026498.1 mouse_genomes_project 2 129962243 129970460 + Prnp protein_coding processed_transcript MGP_AJ_T0057612.1 MGP_AJ_G0026447.1 mouse_genomes_project 2 127107292 127133142 + MGP_AJ_P0057612 Polr1b protein_coding protein_coding MGP_AJ_T0057613.1 MGP_AJ_G0026447.1 mouse_genomes_project 2 127107324 127127307 + MGP_AJ_P0057613 Polr1b protein_coding protein_coding MGP_AJ_T0057614.1 MGP_AJ_G0026447.1 mouse_genomes_project 2 127122210 127125028 + Polr1b protein_coding processed_transcript MGP_AJ_T0057615.1 MGP_AJ_G0026447.1 mouse_genomes_project 2 127125192 127129716 + Polr1b protein_coding processed_transcript MGP_AJ_T0057616.1 MGP_AJ_G0026447.1 mouse_genomes_project 2 127128299 127130416 + Polr1b protein_coding processed_transcript MGP_AJ_T0003972.1 MGP_AJ_G0003541.1 mouse_genomes_project 2 42389615 42392737 + Zeb2os antisense antisense MGP_AJ_T0003973.1 MGP_AJ_G0003541.1 mouse_genomes_project 2 42390880 42392737 + Zeb2os antisense antisense MGP_AJ_T0007397.1 MGP_AJ_G0006063.1 mouse_genomes_project 2 164956963 164974896 - Gm14268 lincRNA lincRNA MGP_AJ_T0007398.1 MGP_AJ_G0006063.1 mouse_genomes_project 2 164957249 164974926 - Gm14268 lincRNA lincRNA MGP_AJ_T0004030.1 MGP_AJ_G0003580.1 mouse_genomes_project 2 77852702 77858945 + Gm13752 antisense antisense MGP_AJ_T0057796.1 MGP_AJ_G0026489.1 mouse_genomes_project 2 129221668 129226554 - MGP_AJ_P0057796 Cenpb protein_coding protein_coding MGP_AJ_T0058163.1 MGP_AJ_G0026570.1 mouse_genomes_project 2 146527371 146528795 + MGP_AJ_P0058163 Sstr4 protein_coding protein_coding MGP_AJ_T0003908.1 MGP_AJ_G0003491.1 mouse_genomes_project 2 16462682 16465564 - Gm13344 antisense antisense MGP_AJ_T0055823.1 MGP_AJ_G0025970.1 mouse_genomes_project 2 84650873 84651830 + MGP_AJ_P0055823 Olfr1112 protein_coding protein_coding MGP_AJ_T0007391.1 MGP_AJ_G0006057.1 mouse_genomes_project 2 164160486 164160811 - Gm28163 lincRNA lincRNA MGP_AJ_T0007348.1 MGP_AJ_G0006021.1 mouse_genomes_project 2 135968118 135974904 - Gm14062 lincRNA lincRNA MGP_AJ_T0013543.1 MGP_AJ_G0011638.1 mouse_genomes_project 2 50757567 50758546 - processed_pseudogene processed_pseudogene MGP_AJ_T0013734.1 MGP_AJ_G0011829.1 mouse_genomes_project 2 117305562 117306237 - processed_pseudogene processed_pseudogene MGP_AJ_T0007193.1 MGP_AJ_G0005893.1 mouse_genomes_project 2 34293454 34294331 - Gm13434 lincRNA lincRNA MGP_AJ_T0055370.1 MGP_AJ_G0025818.1 mouse_genomes_project 2 70995120 71043500 - MGP_AJ_P0055370 Chn1 protein_coding protein_coding MGP_AJ_T0055371.1 MGP_AJ_G0025818.1 mouse_genomes_project 2 70995128 71157196 - MGP_AJ_P0055371 Chn1 protein_coding protein_coding MGP_AJ_T0055372.1 MGP_AJ_G0025818.1 mouse_genomes_project 2 70995128 71157196 - MGP_AJ_P0055372 Chn1 protein_coding protein_coding MGP_AJ_T0055373.1 MGP_AJ_G0025818.1 mouse_genomes_project 2 70997552 71100520 - MGP_AJ_P0055373 Chn1 protein_coding nonsense_mediated_decay MGP_AJ_T0055374.1 MGP_AJ_G0025818.1 mouse_genomes_project 2 71008628 71038627 - MGP_AJ_P0055374 Chn1 protein_coding protein_coding MGP_AJ_T0055375.1 MGP_AJ_G0025818.1 mouse_genomes_project 2 71009346 71157176 - MGP_AJ_P0055375 Chn1 protein_coding nonsense_mediated_decay MGP_AJ_T0055376.1 MGP_AJ_G0025818.1 mouse_genomes_project 2 71061287 71156891 - MGP_AJ_P0055376 Chn1 protein_coding protein_coding MGP_AJ_T0058989.1 MGP_AJ_G0026770.1 mouse_genomes_project 2 159097954 159151782 - MGP_AJ_P0058989 protein_coding protein_coding MGP_AJ_T0052855.1 MGP_AJ_G0025371.1 mouse_genomes_project 2 19788612 19805794 + Pdss1 protein_coding processed_transcript MGP_AJ_T0052856.1 MGP_AJ_G0025371.1 mouse_genomes_project 2 19788612 19834615 + MGP_AJ_P0052856 Pdss1 protein_coding protein_coding MGP_AJ_T0052857.1 MGP_AJ_G0025371.1 mouse_genomes_project 2 19788685 19809308 + MGP_AJ_P0052857 Pdss1 protein_coding protein_coding MGP_AJ_T0052858.1 MGP_AJ_G0025371.1 mouse_genomes_project 2 19788709 19794925 + MGP_AJ_P0052858 Pdss1 protein_coding nonsense_mediated_decay MGP_AJ_T0052859.1 MGP_AJ_G0025371.1 mouse_genomes_project 2 19789138 19799919 + MGP_AJ_P0052859 Pdss1 protein_coding protein_coding MGP_AJ_T0052860.1 MGP_AJ_G0025371.1 mouse_genomes_project 2 19828468 19834604 + Pdss1 protein_coding retained_intron MGP_AJ_T0052861.1 MGP_AJ_G0025371.1 mouse_genomes_project 2 19829904 19834591 + MGP_AJ_P0052861 Pdss1 protein_coding nonsense_mediated_decay MGP_AJ_T0013521.1 MGP_AJ_G0011616.1 mouse_genomes_project 2 43106965 43107964 + processed_pseudogene processed_pseudogene MGP_AJ_T0004039.1 MGP_AJ_G0003587.1 mouse_genomes_project 2 99647691 99650327 + antisense antisense MGP_AJ_T0013874.1 MGP_AJ_G0011969.1 mouse_genomes_project 2 166199096 166199572 + processed_pseudogene processed_pseudogene MGP_AJ_T0058465.1 MGP_AJ_G0026667.1 mouse_genomes_project 2 152221189 152233603 + MGP_AJ_P0058465 Bpifb6 protein_coding protein_coding MGP_AJ_T0058466.1 MGP_AJ_G0026667.1 mouse_genomes_project 2 152221196 152227739 + MGP_AJ_P0058466 Bpifb6 protein_coding protein_coding MGP_AJ_T0013542.1 MGP_AJ_G0011637.1 mouse_genomes_project 2 49955256 49956477 + processed_pseudogene processed_pseudogene MGP_AJ_T0053691.1 MGP_AJ_G0025525.1 mouse_genomes_project 2 26961079 26974035 + MGP_AJ_P0053691 Odf2 protein_coding protein_coding MGP_AJ_T0053692.1 MGP_AJ_G0025525.1 mouse_genomes_project 2 26961092 26964436 + Odf2 protein_coding retained_intron MGP_AJ_T0053693.1 MGP_AJ_G0025525.1 mouse_genomes_project 2 26961578 26996488 + MGP_AJ_P0053693 Odf2 protein_coding protein_coding MGP_AJ_T0053694.1 MGP_AJ_G0025525.1 mouse_genomes_project 2 26961643 26996488 + MGP_AJ_P0053694 Odf2 protein_coding protein_coding MGP_AJ_T0053695.1 MGP_AJ_G0025525.1 mouse_genomes_project 2 26961653 27005699 + MGP_AJ_P0053695 Odf2 protein_coding protein_coding MGP_AJ_T0053696.1 MGP_AJ_G0025525.1 mouse_genomes_project 2 26961653 27005049 + MGP_AJ_P0053696 Odf2 protein_coding protein_coding MGP_AJ_T0053697.1 MGP_AJ_G0025525.1 mouse_genomes_project 2 26961656 27005049 + MGP_AJ_P0053697 Odf2 protein_coding nonsense_mediated_decay MGP_AJ_T0053698.1 MGP_AJ_G0025525.1 mouse_genomes_project 2 26961669 26975204 + Odf2 protein_coding processed_transcript MGP_AJ_T0053699.1 MGP_AJ_G0025525.1 mouse_genomes_project 2 26961673 26975174 + MGP_AJ_P0053699 Odf2 protein_coding protein_coding MGP_AJ_T0053700.1 MGP_AJ_G0025525.1 mouse_genomes_project 2 26961675 27005699 + MGP_AJ_P0053700 Odf2 protein_coding protein_coding MGP_AJ_T0053701.1 MGP_AJ_G0025525.1 mouse_genomes_project 2 26961676 26996488 + MGP_AJ_P0053701 Odf2 protein_coding protein_coding MGP_AJ_T0053702.1 MGP_AJ_G0025525.1 mouse_genomes_project 2 26961683 26974421 + Odf2 protein_coding retained_intron MGP_AJ_T0053703.1 MGP_AJ_G0025525.1 mouse_genomes_project 2 26961692 26977000 + MGP_AJ_P0053703 Odf2 protein_coding protein_coding MGP_AJ_T0053704.1 MGP_AJ_G0025525.1 mouse_genomes_project 2 26961753 27005700 + MGP_AJ_P0053704 Odf2 protein_coding protein_coding MGP_AJ_T0053705.1 MGP_AJ_G0025525.1 mouse_genomes_project 2 26961921 26996488 + MGP_AJ_P0053705 Odf2 protein_coding protein_coding MGP_AJ_T0053706.1 MGP_AJ_G0025525.1 mouse_genomes_project 2 26961941 26962849 + Odf2 protein_coding processed_transcript MGP_AJ_T0053707.1 MGP_AJ_G0025525.1 mouse_genomes_project 2 26962001 26996488 + MGP_AJ_P0053707 Odf2 protein_coding protein_coding MGP_AJ_T0053708.1 MGP_AJ_G0025525.1 mouse_genomes_project 2 26962014 27005049 + MGP_AJ_P0053708 Odf2 protein_coding protein_coding MGP_AJ_T0053709.1 MGP_AJ_G0025525.1 mouse_genomes_project 2 26962398 26996485 + MGP_AJ_P0053709 Odf2 protein_coding protein_coding MGP_AJ_T0053710.1 MGP_AJ_G0025525.1 mouse_genomes_project 2 26963854 26974049 + Odf2 protein_coding processed_transcript MGP_AJ_T0053711.1 MGP_AJ_G0025525.1 mouse_genomes_project 2 26976464 26987576 + Odf2 protein_coding processed_transcript MGP_AJ_T0053712.1 MGP_AJ_G0025525.1 mouse_genomes_project 2 26976495 26988017 + Odf2 protein_coding processed_transcript MGP_AJ_T0053713.1 MGP_AJ_G0025525.1 mouse_genomes_project 2 26985326 26987980 + Odf2 protein_coding retained_intron MGP_AJ_T0053714.1 MGP_AJ_G0025525.1 mouse_genomes_project 2 26987096 26991898 + Odf2 protein_coding retained_intron MGP_AJ_T0053715.1 MGP_AJ_G0025525.1 mouse_genomes_project 2 26999420 27000694 + Odf2 protein_coding retained_intron MGP_AJ_T0058494.1 MGP_AJ_G0026679.1 mouse_genomes_project 2 152689363 152723511 - MGP_AJ_P0058494 Cdk5rap1 protein_coding protein_coding MGP_AJ_T0058495.1 MGP_AJ_G0026679.1 mouse_genomes_project 2 152689369 152723230 - MGP_AJ_P0058495 Cdk5rap1 protein_coding protein_coding MGP_AJ_T0058496.1 MGP_AJ_G0026679.1 mouse_genomes_project 2 152696469 152723272 - Cdk5rap1 protein_coding processed_transcript MGP_AJ_T0058497.1 MGP_AJ_G0026679.1 mouse_genomes_project 2 152705444 152709166 - Cdk5rap1 protein_coding retained_intron MGP_AJ_T0058498.1 MGP_AJ_G0026679.1 mouse_genomes_project 2 152711461 152723242 - MGP_AJ_P0058498 Cdk5rap1 protein_coding protein_coding MGP_AJ_T0058499.1 MGP_AJ_G0026679.1 mouse_genomes_project 2 152716348 152721266 - Cdk5rap1 protein_coding processed_transcript MGP_AJ_T0058500.1 MGP_AJ_G0026679.1 mouse_genomes_project 2 152721158 152723202 - Cdk5rap1 protein_coding processed_transcript MGP_AJ_T0004102.1 MGP_AJ_G0003628.1 mouse_genomes_project 2 133225784 133271990 - 4930545L23Rik antisense antisense MGP_AJ_T0054929.1 MGP_AJ_G0025735.1 mouse_genomes_project 2 57484831 57524416 + MGP_AJ_P0054929 March7 protein_coding protein_coding MGP_AJ_T0054930.1 MGP_AJ_G0025735.1 mouse_genomes_project 2 57484857 57525986 + March7 protein_coding processed_transcript MGP_AJ_T0054931.1 MGP_AJ_G0025735.1 mouse_genomes_project 2 57485017 57523178 + MGP_AJ_P0054931 March7 protein_coding protein_coding MGP_AJ_T0054932.1 MGP_AJ_G0025735.1 mouse_genomes_project 2 57499835 57523162 + MGP_AJ_P0054932 March7 protein_coding protein_coding MGP_AJ_T0054933.1 MGP_AJ_G0025735.1 mouse_genomes_project 2 57507230 57509619 + March7 protein_coding processed_transcript MGP_AJ_T0054934.1 MGP_AJ_G0025735.1 mouse_genomes_project 2 57511960 57523162 + MGP_AJ_P0054934 March7 protein_coding protein_coding MGP_AJ_T0054935.1 MGP_AJ_G0025735.1 mouse_genomes_project 2 57512094 57518341 + March7 protein_coding processed_transcript MGP_AJ_T0054936.1 MGP_AJ_G0025735.1 mouse_genomes_project 2 57518275 57523160 + March7 protein_coding processed_transcript MGP_AJ_T0054937.1 MGP_AJ_G0025735.1 mouse_genomes_project 2 57522547 57523162 + March7 protein_coding processed_transcript MGP_AJ_T0003895.1 MGP_AJ_G0003480.1 mouse_genomes_project 2 3422466 3426714 - Gm13388 antisense antisense MGP_AJ_T0057902.1 MGP_AJ_G0026509.1 mouse_genomes_project 2 130836494 130851274 + MGP_AJ_P0057902 Chgb protein_coding protein_coding MGP_AJ_T0017768.1 MGP_AJ_G0015393.1 mouse_genomes_project 2 49758165 49765025 + A430018G15Rik processed_transcript processed_transcript MGP_AJ_T0017769.1 MGP_AJ_G0015393.1 mouse_genomes_project 2 49758165 49768015 + A430018G15Rik processed_transcript processed_transcript MGP_AJ_T0010400.1 MGP_AJ_G0008522.1 mouse_genomes_project 2 29827162 29827227 + miRNA miRNA MGP_AJ_T0056840.1 MGP_AJ_G0026282.1 mouse_genomes_project 2 116528444 116536940 - MGP_AJ_P0056840 protein_coding protein_coding MGP_AJ_T0056841.1 MGP_AJ_G0026282.1 mouse_genomes_project 2 116531769 116536904 - protein_coding retained_intron MGP_AJ_T0013691.1 MGP_AJ_G0011786.1 mouse_genomes_project 2 101449688 101450162 - processed_pseudogene processed_pseudogene MGP_AJ_T0055897.1 MGP_AJ_G0026031.1 mouse_genomes_project 2 86479834 86482250 + MGP_AJ_P0055897 Olfr1205 protein_coding protein_coding MGP_AJ_T0013681.1 MGP_AJ_G0011776.1 mouse_genomes_project 2 97968693 97968949 + processed_pseudogene processed_pseudogene MGP_AJ_T0059425.1 MGP_AJ_G0026877.1 mouse_genomes_project 2 165801470 165851098 - MGP_AJ_P0059425 Ptgis protein_coding protein_coding MGP_AJ_T0059426.1 MGP_AJ_G0026877.1 mouse_genomes_project 2 165813205 165851113 - MGP_AJ_P0059426 Ptgis protein_coding protein_coding MGP_AJ_T0059427.1 MGP_AJ_G0026877.1 mouse_genomes_project 2 165816820 165818715 - Ptgis protein_coding retained_intron MGP_AJ_T0059846.1 MGP_AJ_G0026977.1 mouse_genomes_project 2 180002387 180011760 - MGP_AJ_P0059846 Eef1a2 protein_coding protein_coding MGP_AJ_T0055101.1 MGP_AJ_G0025764.1 mouse_genomes_project 2 64701437 64701803 - MGP_AJ_P0055101 Gm26727 protein_coding protein_coding MGP_AJ_T0004138.1 MGP_AJ_G0003657.1 mouse_genomes_project 2 154049526 154050561 - Gm14257 antisense antisense MGP_AJ_T0003915.1 MGP_AJ_G0003498.1 mouse_genomes_project 2 18371533 18409907 - antisense antisense MGP_AJ_T0013406.1 MGP_AJ_G0011501.1 mouse_genomes_project 2 634450 635239 - processed_pseudogene processed_pseudogene MGP_AJ_T0056887.1 MGP_AJ_G0026293.1 mouse_genomes_project 2 116910285 116930613 - MGP_AJ_P0056887 Rmdn3 protein_coding protein_coding MGP_AJ_T0056888.1 MGP_AJ_G0026293.1 mouse_genomes_project 2 116912340 116914161 - Rmdn3 protein_coding retained_intron MGP_AJ_T0056889.1 MGP_AJ_G0026293.1 mouse_genomes_project 2 116915703 116921030 - Rmdn3 protein_coding retained_intron MGP_AJ_T0056890.1 MGP_AJ_G0026293.1 mouse_genomes_project 2 116919741 116921039 - Rmdn3 protein_coding retained_intron MGP_AJ_T0056891.1 MGP_AJ_G0026293.1 mouse_genomes_project 2 116927609 116930403 - MGP_AJ_P0056891 Rmdn3 protein_coding protein_coding MGP_AJ_T0056892.1 MGP_AJ_G0026293.1 mouse_genomes_project 2 116927639 116930527 - MGP_AJ_P0056892 Rmdn3 protein_coding protein_coding MGP_AJ_T0056893.1 MGP_AJ_G0026293.1 mouse_genomes_project 2 116927649 116930543 - MGP_AJ_P0056893 Rmdn3 protein_coding protein_coding MGP_AJ_T0057001.1 MGP_AJ_G0026319.1 mouse_genomes_project 2 117851768 117860307 + protein_coding retained_intron MGP_AJ_T0057002.1 MGP_AJ_G0026319.1 mouse_genomes_project 2 117851784 117861368 + protein_coding retained_intron MGP_AJ_T0057003.1 MGP_AJ_G0026319.1 mouse_genomes_project 2 117851784 117860306 + MGP_AJ_P0057003 protein_coding protein_coding MGP_AJ_T0057004.1 MGP_AJ_G0026319.1 mouse_genomes_project 2 117852898 117854473 + protein_coding retained_intron MGP_AJ_T0057005.1 MGP_AJ_G0026319.1 mouse_genomes_project 2 117857210 117858790 + protein_coding retained_intron MGP_AJ_T0057006.1 MGP_AJ_G0026319.1 mouse_genomes_project 2 117859311 117860032 + protein_coding retained_intron MGP_AJ_T0001025.1 MGP_AJ_G0000956.1 mouse_genomes_project 2 8213584 8216256 - TEC TEC MGP_AJ_T0004002.1 MGP_AJ_G0003564.1 mouse_genomes_project 2 68829591 68841138 - Dlx1as antisense antisense MGP_AJ_T0004003.1 MGP_AJ_G0003564.1 mouse_genomes_project 2 68837168 68841146 - Dlx1as antisense antisense MGP_AJ_T0004004.1 MGP_AJ_G0003564.1 mouse_genomes_project 2 68841057 68850838 - Dlx1as antisense antisense MGP_AJ_T0004005.1 MGP_AJ_G0003564.1 mouse_genomes_project 2 68845989 68850919 - Dlx1as antisense antisense MGP_AJ_T0056971.1 MGP_AJ_G0026315.1 mouse_genomes_project 2 117710303 117787961 + MGP_AJ_P0056971 Mga protein_coding protein_coding MGP_AJ_T0056972.1 MGP_AJ_G0026315.1 mouse_genomes_project 2 117710303 117784827 + MGP_AJ_P0056972 Mga protein_coding protein_coding MGP_AJ_T0056973.1 MGP_AJ_G0026315.1 mouse_genomes_project 2 117710303 117787961 + MGP_AJ_P0056973 Mga protein_coding protein_coding MGP_AJ_T0056974.1 MGP_AJ_G0026315.1 mouse_genomes_project 2 117710303 117787961 + MGP_AJ_P0056974 Mga protein_coding protein_coding MGP_AJ_T0056975.1 MGP_AJ_G0026315.1 mouse_genomes_project 2 117710307 117730819 + Mga protein_coding retained_intron MGP_AJ_T0056976.1 MGP_AJ_G0026315.1 mouse_genomes_project 2 117710320 117784825 + MGP_AJ_P0056976 Mga protein_coding unknown_likely_coding MGP_AJ_T0056977.1 MGP_AJ_G0026315.1 mouse_genomes_project 2 117710323 117739521 + Mga protein_coding processed_transcript MGP_AJ_T0056978.1 MGP_AJ_G0026315.1 mouse_genomes_project 2 117710380 117777921 + MGP_AJ_P0056978 Mga protein_coding protein_coding MGP_AJ_T0056979.1 MGP_AJ_G0026315.1 mouse_genomes_project 2 117734541 117736937 + Mga protein_coding retained_intron MGP_AJ_T0056980.1 MGP_AJ_G0026315.1 mouse_genomes_project 2 117748012 117751601 + Mga protein_coding processed_transcript MGP_AJ_T0056981.1 MGP_AJ_G0026315.1 mouse_genomes_project 2 117748181 117759355 + Mga protein_coding processed_transcript MGP_AJ_T0056982.1 MGP_AJ_G0026315.1 mouse_genomes_project 2 117748276 117754445 + Mga protein_coding processed_transcript MGP_AJ_T0056983.1 MGP_AJ_G0026315.1 mouse_genomes_project 2 117754154 117760103 + Mga protein_coding processed_transcript MGP_AJ_T0056984.1 MGP_AJ_G0026315.1 mouse_genomes_project 2 117754658 117759896 + Mga protein_coding processed_transcript MGP_AJ_T0056985.1 MGP_AJ_G0026315.1 mouse_genomes_project 2 117775440 117782441 + Mga protein_coding processed_transcript MGP_AJ_T0056986.1 MGP_AJ_G0026315.1 mouse_genomes_project 2 117777531 117779350 + Mga protein_coding retained_intron MGP_AJ_T0057321.1 MGP_AJ_G0026375.1 mouse_genomes_project 2 120191666 120223249 + MGP_AJ_P0057321 Duox1 protein_coding protein_coding MGP_AJ_T0007374.1 MGP_AJ_G0006042.1 mouse_genomes_project 2 155095368 155096370 - Gm14174 lincRNA lincRNA MGP_AJ_T0054239.1 MGP_AJ_G0025601.1 mouse_genomes_project 2 29933982 29941030 - MGP_AJ_P0054239 Cfap157 protein_coding protein_coding MGP_AJ_T0054240.1 MGP_AJ_G0025601.1 mouse_genomes_project 2 29934816 29935748 - Cfap157 protein_coding retained_intron MGP_AJ_T0010352.1 MGP_AJ_G0008474.1 mouse_genomes_project 2 7530733 7531419 + miRNA miRNA MGP_AJ_T0013762.1 MGP_AJ_G0011857.1 mouse_genomes_project 2 129463225 129463550 - processed_pseudogene processed_pseudogene MGP_AJ_T0013677.1 MGP_AJ_G0011772.1 mouse_genomes_project 2 95884783 95884955 + processed_pseudogene processed_pseudogene MGP_AJ_T0003974.1 MGP_AJ_G0003542.1 mouse_genomes_project 2 49719207 49721542 + antisense antisense MGP_AJ_T0059762.1 MGP_AJ_G0026964.1 mouse_genomes_project 2 179440597 179464903 + MGP_AJ_P0059762 Col9a3 protein_coding protein_coding MGP_AJ_T0059763.1 MGP_AJ_G0026964.1 mouse_genomes_project 2 179441029 179464899 + MGP_AJ_P0059763 Col9a3 protein_coding protein_coding MGP_AJ_T0059764.1 MGP_AJ_G0026964.1 mouse_genomes_project 2 179441613 179448400 + Col9a3 protein_coding retained_intron MGP_AJ_T0059765.1 MGP_AJ_G0026964.1 mouse_genomes_project 2 179445807 179456044 + Col9a3 protein_coding retained_intron MGP_AJ_T0059766.1 MGP_AJ_G0026964.1 mouse_genomes_project 2 179456731 179464012 + Col9a3 protein_coding retained_intron MGP_AJ_T0059767.1 MGP_AJ_G0026964.1 mouse_genomes_project 2 179458884 179464316 + Col9a3 protein_coding retained_intron MGP_AJ_T0054382.1 MGP_AJ_G0025622.1 mouse_genomes_project 2 32090059 32110280 - MGP_AJ_P0054382 Phf19 protein_coding protein_coding MGP_AJ_T0054383.1 MGP_AJ_G0025622.1 mouse_genomes_project 2 32090086 32100453 - Phf19 protein_coding processed_transcript MGP_AJ_T0054384.1 MGP_AJ_G0025622.1 mouse_genomes_project 2 32094384 32101208 - Phf19 protein_coding processed_transcript MGP_AJ_T0054385.1 MGP_AJ_G0025622.1 mouse_genomes_project 2 32095271 32110330 - Phf19 protein_coding retained_intron MGP_AJ_T0054386.1 MGP_AJ_G0025622.1 mouse_genomes_project 2 32103398 32110321 - MGP_AJ_P0054386 Phf19 protein_coding protein_coding MGP_AJ_T0007417.1 MGP_AJ_G0006078.1 mouse_genomes_project 2 167760186 167764143 + Gm14258 lincRNA lincRNA MGP_AJ_T0056692.1 MGP_AJ_G0026240.1 mouse_genomes_project 2 109762009 109762948 - MGP_AJ_P0056692 protein_coding protein_coding MGP_AJ_T0013688.1 MGP_AJ_G0011783.1 mouse_genomes_project 2 100860194 100860621 - processed_pseudogene processed_pseudogene MGP_AJ_T0057388.1 MGP_AJ_G0026389.1 mouse_genomes_project 2 123104403 123183012 + MGP_AJ_P0057388 Slc12a1 protein_coding protein_coding MGP_AJ_T0057389.1 MGP_AJ_G0026389.1 mouse_genomes_project 2 123104478 123118933 + Slc12a1 protein_coding retained_intron MGP_AJ_T0057390.1 MGP_AJ_G0026389.1 mouse_genomes_project 2 123104498 123183009 + MGP_AJ_P0057390 Slc12a1 protein_coding protein_coding MGP_AJ_T0057391.1 MGP_AJ_G0026389.1 mouse_genomes_project 2 123104498 123183012 + MGP_AJ_P0057391 Slc12a1 protein_coding protein_coding MGP_AJ_T0057392.1 MGP_AJ_G0026389.1 mouse_genomes_project 2 123105826 123181872 + MGP_AJ_P0057392 Slc12a1 protein_coding unknown_likely_coding MGP_AJ_T0007204.1 MGP_AJ_G0005903.1 mouse_genomes_project 2 47885448 47889793 + Gm13485 lincRNA lincRNA MGP_AJ_T0059673.1 MGP_AJ_G0026942.1 mouse_genomes_project 2 177161616 177225414 - MGP_AJ_P0059673 Sycp2 protein_coding protein_coding MGP_AJ_T0059674.1 MGP_AJ_G0026942.1 mouse_genomes_project 2 177162442 177191718 - Sycp2 protein_coding processed_transcript MGP_AJ_T0059675.1 MGP_AJ_G0026942.1 mouse_genomes_project 2 177186178 177192058 - Sycp2 protein_coding retained_intron MGP_AJ_T0059676.1 MGP_AJ_G0026942.1 mouse_genomes_project 2 177212577 177225151 - MGP_AJ_P0059676 Sycp2 protein_coding protein_coding MGP_AJ_T0054835.1 MGP_AJ_G0025720.1 mouse_genomes_project 2 54559964 54692223 + Gpd2 protein_coding processed_transcript MGP_AJ_T0054836.1 MGP_AJ_G0025720.1 mouse_genomes_project 2 54560007 54695088 + MGP_AJ_P0054836 Gpd2 protein_coding protein_coding MGP_AJ_T0054837.1 MGP_AJ_G0025720.1 mouse_genomes_project 2 54560626 54695088 + MGP_AJ_P0054837 Gpd2 protein_coding protein_coding MGP_AJ_T0054838.1 MGP_AJ_G0025720.1 mouse_genomes_project 2 54560711 54695088 + MGP_AJ_P0054838 Gpd2 protein_coding protein_coding MGP_AJ_T0054839.1 MGP_AJ_G0025720.1 mouse_genomes_project 2 54566659 54629067 + Gpd2 protein_coding processed_transcript MGP_AJ_T0054840.1 MGP_AJ_G0025720.1 mouse_genomes_project 2 54587421 54590395 + Gpd2 protein_coding processed_transcript MGP_AJ_T0054841.1 MGP_AJ_G0025720.1 mouse_genomes_project 2 54589664 54590395 + Gpd2 protein_coding processed_transcript MGP_AJ_T0017863.1 MGP_AJ_G0015443.1 mouse_genomes_project 2 127022469 127027277 + Gm14027 processed_transcript processed_transcript MGP_AJ_T0101041.1 MGP_AJ_G0039007.1 mouse_genomes_project 2 60117357 60117493 - Gm22020 snoRNA snoRNA MGP_AJ_T0001036.1 MGP_AJ_G0000967.1 mouse_genomes_project 2 10094905 10097506 + TEC TEC MGP_AJ_T0057363.1 MGP_AJ_G0026384.1 mouse_genomes_project 2 122038382 122092012 + Sema6d protein_coding retained_intron MGP_AJ_T0057364.1 MGP_AJ_G0026384.1 mouse_genomes_project 2 122038382 122624277 + MGP_AJ_P0057364 Sema6d protein_coding protein_coding MGP_AJ_T0057365.1 MGP_AJ_G0026384.1 mouse_genomes_project 2 122091663 122461064 + Sema6d protein_coding processed_transcript MGP_AJ_T0057366.1 MGP_AJ_G0026384.1 mouse_genomes_project 2 122565063 122618659 + Sema6d protein_coding retained_intron MGP_AJ_T0057367.1 MGP_AJ_G0026384.1 mouse_genomes_project 2 122565253 122624277 + MGP_AJ_P0057367 Sema6d protein_coding protein_coding MGP_AJ_T0057368.1 MGP_AJ_G0026384.1 mouse_genomes_project 2 122565253 122621763 + MGP_AJ_P0057368 Sema6d protein_coding protein_coding MGP_AJ_T0057369.1 MGP_AJ_G0026384.1 mouse_genomes_project 2 122565253 122624277 + MGP_AJ_P0057369 Sema6d protein_coding protein_coding MGP_AJ_T0057370.1 MGP_AJ_G0026384.1 mouse_genomes_project 2 122565253 122624277 + MGP_AJ_P0057370 Sema6d protein_coding protein_coding MGP_AJ_T0057371.1 MGP_AJ_G0026384.1 mouse_genomes_project 2 122565530 122624278 + MGP_AJ_P0057371 Sema6d protein_coding protein_coding MGP_AJ_T0057372.1 MGP_AJ_G0026384.1 mouse_genomes_project 2 122565558 122621763 + MGP_AJ_P0057372 Sema6d protein_coding protein_coding MGP_AJ_T0057373.1 MGP_AJ_G0026384.1 mouse_genomes_project 2 122609352 122621083 + MGP_AJ_P0057373 Sema6d protein_coding protein_coding MGP_AJ_T0010462.1 MGP_AJ_G0008584.1 mouse_genomes_project 2 143976462 143976650 + Gm25026 miRNA miRNA MGP_AJ_T0054296.1 MGP_AJ_G0025609.1 mouse_genomes_project 2 30377149 30408800 + MGP_AJ_P0054296 Angptl2 protein_coding protein_coding MGP_AJ_T0054297.1 MGP_AJ_G0025609.1 mouse_genomes_project 2 30377153 30405602 + Angptl2 protein_coding retained_intron MGP_AJ_T0054298.1 MGP_AJ_G0025609.1 mouse_genomes_project 2 30377178 30391205 + Angptl2 protein_coding retained_intron MGP_AJ_T0054299.1 MGP_AJ_G0025609.1 mouse_genomes_project 2 30377197 30403476 + MGP_AJ_P0054299 Angptl2 protein_coding protein_coding MGP_AJ_T0007299.1 MGP_AJ_G0005982.1 mouse_genomes_project 2 112600569 112817124 + lincRNA lincRNA MGP_AJ_T0054603.1 MGP_AJ_G0025684.1 mouse_genomes_project 2 36247519 36256209 + MGP_AJ_P0054603 Wdr38 protein_coding nonsense_mediated_decay MGP_AJ_T0054604.1 MGP_AJ_G0025684.1 mouse_genomes_project 2 36248362 36251626 + MGP_AJ_P0054604 Wdr38 protein_coding protein_coding MGP_AJ_T0054605.1 MGP_AJ_G0025684.1 mouse_genomes_project 2 36248375 36250318 + Wdr38 protein_coding processed_transcript MGP_AJ_T0056385.1 MGP_AJ_G0026153.1 mouse_genomes_project 2 99312959 99401105 - MGP_AJ_P0056385 Prr5l protein_coding protein_coding MGP_AJ_T0056386.1 MGP_AJ_G0026153.1 mouse_genomes_project 2 99312959 99443632 - MGP_AJ_P0056386 Prr5l protein_coding protein_coding MGP_AJ_T0056387.1 MGP_AJ_G0026153.1 mouse_genomes_project 2 99314913 99401106 - MGP_AJ_P0056387 Prr5l protein_coding protein_coding MGP_AJ_T0056388.1 MGP_AJ_G0026153.1 mouse_genomes_project 2 99315958 99401048 - MGP_AJ_P0056388 Prr5l protein_coding protein_coding MGP_AJ_T0056389.1 MGP_AJ_G0026153.1 mouse_genomes_project 2 99343237 99443632 - MGP_AJ_P0056389 Prr5l protein_coding protein_coding MGP_AJ_T0056390.1 MGP_AJ_G0026153.1 mouse_genomes_project 2 99360485 99490362 - MGP_AJ_P0056390 Prr5l protein_coding protein_coding MGP_AJ_T0056391.1 MGP_AJ_G0026153.1 mouse_genomes_project 2 99374078 99401452 - MGP_AJ_P0056391 Prr5l protein_coding protein_coding MGP_AJ_T0056392.1 MGP_AJ_G0026153.1 mouse_genomes_project 2 99374122 99418001 - MGP_AJ_P0056392 Prr5l protein_coding protein_coding MGP_AJ_T0056393.1 MGP_AJ_G0026153.1 mouse_genomes_project 2 99374233 99401131 - Prr5l protein_coding processed_transcript MGP_AJ_T0056394.1 MGP_AJ_G0026153.1 mouse_genomes_project 2 99435800 99490375 - Prr5l protein_coding processed_transcript MGP_AJ_T0001040.1 MGP_AJ_G0000971.1 mouse_genomes_project 2 10249451 10251325 - TEC TEC MGP_AJ_T0055818.1 MGP_AJ_G0025965.1 mouse_genomes_project 2 84513512 84514451 - MGP_AJ_P0055818 Olfr1107 protein_coding protein_coding MGP_AJ_T0054513.1 MGP_AJ_G0025658.1 mouse_genomes_project 2 34124801 34125734 - MGP_AJ_P0054513 Olfr355 protein_coding protein_coding MGP_AJ_T0055821.1 MGP_AJ_G0025968.1 mouse_genomes_project 2 84586267 84587206 - MGP_AJ_P0055821 Olfr1110 protein_coding protein_coding MGP_AJ_T0059862.1 MGP_AJ_G0026983.1 mouse_genomes_project 2 180101787 180138694 - MGP_AJ_P0059862 Gmeb2 protein_coding protein_coding MGP_AJ_T0059863.1 MGP_AJ_G0026983.1 mouse_genomes_project 2 180104123 180128277 - MGP_AJ_P0059863 Gmeb2 protein_coding nonsense_mediated_decay MGP_AJ_T0059864.1 MGP_AJ_G0026983.1 mouse_genomes_project 2 180105107 180106464 - Gmeb2 protein_coding retained_intron MGP_AJ_T0059865.1 MGP_AJ_G0026983.1 mouse_genomes_project 2 180106250 180137733 - MGP_AJ_P0059865 Gmeb2 protein_coding protein_coding MGP_AJ_T0059866.1 MGP_AJ_G0026983.1 mouse_genomes_project 2 180106270 180138675 - MGP_AJ_P0059866 Gmeb2 protein_coding nonsense_mediated_decay MGP_AJ_T0059867.1 MGP_AJ_G0026983.1 mouse_genomes_project 2 180115863 180138690 - Gmeb2 protein_coding retained_intron MGP_AJ_T0052320.1 MGP_AJ_G0025281.1 mouse_genomes_project 2 289133 296823 + MGP_AJ_P0052320 Acbd7 protein_coding unknown_likely_coding MGP_AJ_T0052321.1 MGP_AJ_G0025281.1 mouse_genomes_project 2 292219 297045 + MGP_AJ_P0052321 Acbd7 protein_coding protein_coding MGP_AJ_T0013672.1 MGP_AJ_G0011767.1 mouse_genomes_project 2 93314207 93314346 + processed_pseudogene processed_pseudogene MGP_AJ_T0058704.1 MGP_AJ_G0026720.1 mouse_genomes_project 2 154536128 154540523 + Spag4 protein_coding retained_intron MGP_AJ_T0058705.1 MGP_AJ_G0026720.1 mouse_genomes_project 2 154536151 154541639 + Spag4 protein_coding retained_intron MGP_AJ_T0058706.1 MGP_AJ_G0026720.1 mouse_genomes_project 2 154536180 154540246 + Spag4 protein_coding retained_intron MGP_AJ_T0058707.1 MGP_AJ_G0026720.1 mouse_genomes_project 2 154536197 154540523 + MGP_AJ_P0058707 Spag4 protein_coding protein_coding MGP_AJ_T0058708.1 MGP_AJ_G0026720.1 mouse_genomes_project 2 154536390 154538344 + MGP_AJ_P0058708 Spag4 protein_coding nonsense_mediated_decay MGP_AJ_T0058709.1 MGP_AJ_G0026720.1 mouse_genomes_project 2 154536506 154538550 + MGP_AJ_P0058709 Spag4 protein_coding nonsense_mediated_decay MGP_AJ_T0058710.1 MGP_AJ_G0026720.1 mouse_genomes_project 2 154536695 154539072 + MGP_AJ_P0058710 Spag4 protein_coding protein_coding MGP_AJ_T0058711.1 MGP_AJ_G0026720.1 mouse_genomes_project 2 154537688 154540400 + Spag4 protein_coding processed_transcript MGP_AJ_T0099765.1 MGP_AJ_G0037731.1 mouse_genomes_project 2 68758000 68758101 - Gm23166 snRNA snRNA MGP_AJ_T0054205.1 MGP_AJ_G0025595.1 mouse_genomes_project 2 29857965 29863908 - protein_coding retained_intron MGP_AJ_T0054206.1 MGP_AJ_G0025595.1 mouse_genomes_project 2 29859649 29865517 - MGP_AJ_P0054206 protein_coding unknown_likely_coding MGP_AJ_T0054207.1 MGP_AJ_G0025595.1 mouse_genomes_project 2 29860893 29865937 - MGP_AJ_P0054207 protein_coding nonsense_mediated_decay MGP_AJ_T0054208.1 MGP_AJ_G0025595.1 mouse_genomes_project 2 29860961 29862582 - protein_coding retained_intron MGP_AJ_T0054209.1 MGP_AJ_G0025595.1 mouse_genomes_project 2 29862392 29863210 - protein_coding retained_intron MGP_AJ_T0054210.1 MGP_AJ_G0025595.1 mouse_genomes_project 2 29862516 29863363 - protein_coding retained_intron MGP_AJ_T0054211.1 MGP_AJ_G0025595.1 mouse_genomes_project 2 29862716 29865618 - MGP_AJ_P0054211 protein_coding nonsense_mediated_decay MGP_AJ_T0054212.1 MGP_AJ_G0025595.1 mouse_genomes_project 2 29863018 29865114 - MGP_AJ_P0054212 protein_coding protein_coding MGP_AJ_T0053236.1 MGP_AJ_G0025436.1 mouse_genomes_project 2 22598147 22607103 - MGP_AJ_P0053236 Ccdc183 protein_coding protein_coding MGP_AJ_T0053237.1 MGP_AJ_G0025436.1 mouse_genomes_project 2 22598205 22607084 - Ccdc183 protein_coding processed_transcript MGP_AJ_T0010360.1 MGP_AJ_G0008482.1 mouse_genomes_project 2 7535721 7535819 + Mir669m-2 miRNA miRNA MGP_AJ_T0058239.1 MGP_AJ_G0026601.1 mouse_genomes_project 2 149135395 149211844 - MGP_AJ_P0058239 Ninl protein_coding protein_coding MGP_AJ_T0058240.1 MGP_AJ_G0026601.1 mouse_genomes_project 2 149137916 149141975 - Ninl protein_coding processed_transcript MGP_AJ_T0058241.1 MGP_AJ_G0026601.1 mouse_genomes_project 2 149138430 149153858 - MGP_AJ_P0058241 Ninl protein_coding protein_coding MGP_AJ_T0058242.1 MGP_AJ_G0026601.1 mouse_genomes_project 2 149153556 149154990 - Ninl protein_coding retained_intron MGP_AJ_T0058243.1 MGP_AJ_G0026601.1 mouse_genomes_project 2 149160515 149173590 - MGP_AJ_P0058243 Ninl protein_coding protein_coding MGP_AJ_T0058244.1 MGP_AJ_G0026601.1 mouse_genomes_project 2 149165879 149173724 - Ninl protein_coding processed_transcript MGP_AJ_T0058245.1 MGP_AJ_G0026601.1 mouse_genomes_project 2 149165971 149211778 - Ninl protein_coding processed_transcript MGP_AJ_T0058246.1 MGP_AJ_G0026601.1 mouse_genomes_project 2 149168692 149211822 - Ninl protein_coding processed_transcript MGP_AJ_T0058247.1 MGP_AJ_G0026601.1 mouse_genomes_project 2 149176632 149254838 - MGP_AJ_P0058247 Ninl protein_coding protein_coding MGP_AJ_T0013419.1 MGP_AJ_G0011514.1 mouse_genomes_project 2 6261670 6262100 - processed_pseudogene processed_pseudogene MGP_AJ_T0098832.1 MGP_AJ_G0036816.1 mouse_genomes_project 2 101686301 101686440 + Gm24644 scaRNA scaRNA MGP_AJ_T0052862.1 MGP_AJ_G0025372.1 mouse_genomes_project 2 19834421 19942519 - MGP_AJ_P0052862 Abi1 protein_coding protein_coding MGP_AJ_T0052863.1 MGP_AJ_G0025372.1 mouse_genomes_project 2 19834421 19942591 - MGP_AJ_P0052863 Abi1 protein_coding protein_coding MGP_AJ_T0052864.1 MGP_AJ_G0025372.1 mouse_genomes_project 2 19834434 19942591 - MGP_AJ_P0052864 Abi1 protein_coding protein_coding MGP_AJ_T0052865.1 MGP_AJ_G0025372.1 mouse_genomes_project 2 19834656 19942446 - MGP_AJ_P0052865 Abi1 protein_coding protein_coding MGP_AJ_T0052866.1 MGP_AJ_G0025372.1 mouse_genomes_project 2 19834712 19942511 - MGP_AJ_P0052866 Abi1 protein_coding protein_coding MGP_AJ_T0052867.1 MGP_AJ_G0025372.1 mouse_genomes_project 2 19834712 19942428 - MGP_AJ_P0052867 Abi1 protein_coding protein_coding MGP_AJ_T0052868.1 MGP_AJ_G0025372.1 mouse_genomes_project 2 19834712 19942461 - MGP_AJ_P0052868 Abi1 protein_coding protein_coding MGP_AJ_T0052869.1 MGP_AJ_G0025372.1 mouse_genomes_project 2 19834717 19942554 - MGP_AJ_P0052869 Abi1 protein_coding protein_coding MGP_AJ_T0052870.1 MGP_AJ_G0025372.1 mouse_genomes_project 2 19834717 19942509 - MGP_AJ_P0052870 Abi1 protein_coding protein_coding MGP_AJ_T0052871.1 MGP_AJ_G0025372.1 mouse_genomes_project 2 19835240 19942464 - MGP_AJ_P0052871 Abi1 protein_coding protein_coding MGP_AJ_T0052872.1 MGP_AJ_G0025372.1 mouse_genomes_project 2 19835581 19942543 - MGP_AJ_P0052872 Abi1 protein_coding protein_coding MGP_AJ_T0052873.1 MGP_AJ_G0025372.1 mouse_genomes_project 2 19836156 19851433 - Abi1 protein_coding retained_intron MGP_AJ_T0052874.1 MGP_AJ_G0025372.1 mouse_genomes_project 2 19836160 19854521 - Abi1 protein_coding retained_intron MGP_AJ_T0052875.1 MGP_AJ_G0025372.1 mouse_genomes_project 2 19850905 19865940 - Abi1 protein_coding retained_intron MGP_AJ_T0052876.1 MGP_AJ_G0025372.1 mouse_genomes_project 2 19854444 19867698 - Abi1 protein_coding retained_intron MGP_AJ_T0017887.1 MGP_AJ_G0015458.1 mouse_genomes_project 2 155198106 155204534 - 4930405A21Rik processed_transcript processed_transcript MGP_AJ_T0017888.1 MGP_AJ_G0015458.1 mouse_genomes_project 2 155199517 155204451 - 4930405A21Rik processed_transcript retained_intron MGP_AJ_T0059021.1 MGP_AJ_G0026776.1 mouse_genomes_project 2 159474438 159640742 - MGP_AJ_P0059021 Chd6 protein_coding protein_coding MGP_AJ_T0059022.1 MGP_AJ_G0026776.1 mouse_genomes_project 2 159488725 159490305 - Chd6 protein_coding processed_transcript MGP_AJ_T0059023.1 MGP_AJ_G0026776.1 mouse_genomes_project 2 159488847 159493580 - Chd6 protein_coding processed_transcript MGP_AJ_T0059024.1 MGP_AJ_G0026776.1 mouse_genomes_project 2 159509272 159513836 - Chd6 protein_coding retained_intron MGP_AJ_T0059025.1 MGP_AJ_G0026776.1 mouse_genomes_project 2 159511974 159640742 - MGP_AJ_P0059025 Chd6 protein_coding protein_coding MGP_AJ_T0059026.1 MGP_AJ_G0026776.1 mouse_genomes_project 2 159520390 159537054 - Chd6 protein_coding retained_intron MGP_AJ_T0059027.1 MGP_AJ_G0026776.1 mouse_genomes_project 2 159536594 159640795 - Chd6 protein_coding retained_intron MGP_AJ_T0059028.1 MGP_AJ_G0026776.1 mouse_genomes_project 2 159542652 159546810 - Chd6 protein_coding processed_transcript MGP_AJ_T0059029.1 MGP_AJ_G0026776.1 mouse_genomes_project 2 159554446 159558109 - Chd6 protein_coding processed_transcript MGP_AJ_T0059030.1 MGP_AJ_G0026776.1 mouse_genomes_project 2 159558399 159581130 - MGP_AJ_P0059030 Chd6 protein_coding protein_coding MGP_AJ_T0059031.1 MGP_AJ_G0026776.1 mouse_genomes_project 2 159563591 159640724 - Chd6 protein_coding retained_intron MGP_AJ_T0056873.1 MGP_AJ_G0026290.1 mouse_genomes_project 2 116806691 116811668 + MGP_AJ_P0056873 Rpusd2 protein_coding protein_coding MGP_AJ_T0058248.1 MGP_AJ_G0026602.1 mouse_genomes_project 2 149244787 149254854 - MGP_AJ_P0058248 Gm6741 protein_coding protein_coding MGP_AJ_T0058250.1 MGP_AJ_G0026602.1 mouse_genomes_project 2 149245859 149254818 - Gm6741 protein_coding processed_transcript MGP_AJ_T0013748.1 MGP_AJ_G0011843.1 mouse_genomes_project 2 125677095 125678938 + processed_pseudogene processed_pseudogene MGP_AJ_T0007354.1 MGP_AJ_G0006026.1 mouse_genomes_project 2 145440733 145442256 - Gm14110 lincRNA lincRNA MGP_AJ_T0053315.1 MGP_AJ_G0025458.1 mouse_genomes_project 2 23269764 23275562 - MGP_AJ_P0053315 C030048H21Rik protein_coding protein_coding MGP_AJ_T0054497.1 MGP_AJ_G0025643.1 mouse_genomes_project 2 33636286 33637225 + MGP_AJ_P0054497 Olfr340 protein_coding protein_coding MGP_AJ_T0001090.1 MGP_AJ_G0001019.1 mouse_genomes_project 2 72733911 72734506 - TEC TEC MGP_AJ_T0057513.1 MGP_AJ_G0026419.1 mouse_genomes_project 2 125254187 125268732 + Stard7 protein_coding processed_transcript MGP_AJ_T0057514.1 MGP_AJ_G0026419.1 mouse_genomes_project 2 125254551 125283060 + MGP_AJ_P0057514 Stard7 protein_coding protein_coding MGP_AJ_T0057515.1 MGP_AJ_G0026419.1 mouse_genomes_project 2 125254673 125283053 + MGP_AJ_P0057515 Stard7 protein_coding protein_coding MGP_AJ_T0057516.1 MGP_AJ_G0026419.1 mouse_genomes_project 2 125268381 125279963 + Stard7 protein_coding retained_intron MGP_AJ_T0057517.1 MGP_AJ_G0026419.1 mouse_genomes_project 2 125274367 125281434 + Stard7 protein_coding retained_intron MGP_AJ_T0057518.1 MGP_AJ_G0026419.1 mouse_genomes_project 2 125276381 125281459 + Stard7 protein_coding processed_transcript MGP_AJ_T0057519.1 MGP_AJ_G0026419.1 mouse_genomes_project 2 125276383 125281488 + Stard7 protein_coding processed_transcript MGP_AJ_T0059223.1 MGP_AJ_G0026843.1 mouse_genomes_project 2 163361639 163365825 + MGP_AJ_P0059223 Zswim1 protein_coding protein_coding MGP_AJ_T0059224.1 MGP_AJ_G0026843.1 mouse_genomes_project 2 163361966 163364222 + MGP_AJ_P0059224 Zswim1 protein_coding protein_coding MGP_AJ_T0102506.1 MGP_AJ_G0040248.1 mouse_genomes_project 2 87972106 87973138 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0004174.1 MGP_AJ_G0003685.1 mouse_genomes_project 2 169079155 169082118 + Bcas1os1 antisense antisense MGP_AJ_T0052414.1 MGP_AJ_G0025297.1 mouse_genomes_project 2 2002469 2018980 - Optn protein_coding processed_transcript MGP_AJ_T0052415.1 MGP_AJ_G0025297.1 mouse_genomes_project 2 2002469 2051080 - MGP_AJ_P0052415 Optn protein_coding protein_coding MGP_AJ_T0052416.1 MGP_AJ_G0025297.1 mouse_genomes_project 2 2002471 2050973 - MGP_AJ_P0052416 Optn protein_coding protein_coding MGP_AJ_T0052417.1 MGP_AJ_G0025297.1 mouse_genomes_project 2 2003128 2020274 - Optn protein_coding processed_transcript MGP_AJ_T0052418.1 MGP_AJ_G0025297.1 mouse_genomes_project 2 2029294 2051086 - Optn protein_coding processed_transcript MGP_AJ_T0056199.1 MGP_AJ_G0026120.1 mouse_genomes_project 2 89554945 89556828 - MGP_AJ_P0056199 Mdk protein_coding protein_coding MGP_AJ_T0056200.1 MGP_AJ_G0026120.1 mouse_genomes_project 2 89554968 89557484 - MGP_AJ_P0056200 Mdk protein_coding protein_coding MGP_AJ_T0056201.1 MGP_AJ_G0026120.1 mouse_genomes_project 2 89554968 89556920 - MGP_AJ_P0056201 Mdk protein_coding protein_coding MGP_AJ_T0056202.1 MGP_AJ_G0026120.1 mouse_genomes_project 2 89555106 89556839 - MGP_AJ_P0056202 Mdk protein_coding protein_coding MGP_AJ_T0101075.1 MGP_AJ_G0039041.1 mouse_genomes_project 2 146748984 146749096 + Gm25866 snoRNA snoRNA MGP_AJ_T0004071.1 MGP_AJ_G0003607.1 mouse_genomes_project 2 119107094 119109467 - Gm14978 antisense antisense MGP_AJ_T0054537.1 MGP_AJ_G0025671.1 mouse_genomes_project 2 34640302 34645722 - MGP_AJ_P0054537 Zbtb6 protein_coding protein_coding MGP_AJ_T0054538.1 MGP_AJ_G0025671.1 mouse_genomes_project 2 34640305 34658538 - MGP_AJ_P0054538 Zbtb6 protein_coding protein_coding MGP_AJ_T0056712.1 MGP_AJ_G0026250.1 mouse_genomes_project 2 110103665 110109352 - MGP_AJ_P0056712 Emc4 protein_coding protein_coding MGP_AJ_T0056713.1 MGP_AJ_G0026250.1 mouse_genomes_project 2 110104447 110109345 - Emc4 protein_coding processed_transcript MGP_AJ_T0007335.1 MGP_AJ_G0006009.1 mouse_genomes_project 2 130472917 130500473 + 4921508D12Rik lincRNA lincRNA MGP_AJ_T0013845.1 MGP_AJ_G0011940.1 mouse_genomes_project 2 155331038 155340495 + processed_pseudogene processed_pseudogene MGP_AJ_T0017772.1 MGP_AJ_G0015396.1 mouse_genomes_project 2 54558556 54560838 - A930012O16Rik processed_transcript processed_transcript MGP_AJ_T0017773.1 MGP_AJ_G0015396.1 mouse_genomes_project 2 54558556 54560838 - A930012O16Rik processed_transcript processed_transcript MGP_AJ_T0007185.1 MGP_AJ_G0005888.1 mouse_genomes_project 2 31201258 31292768 - C230014O12Rik lincRNA lincRNA MGP_AJ_T0007187.1 MGP_AJ_G0005888.1 mouse_genomes_project 2 31285068 31292774 - C230014O12Rik lincRNA lincRNA MGP_AJ_T0056020.1 MGP_AJ_G0026095.1 mouse_genomes_project 2 88492328 88496994 + MGP_AJ_P0056020 C1qtnf4 protein_coding protein_coding MGP_AJ_T0013564.1 MGP_AJ_G0011659.1 mouse_genomes_project 2 57258690 57259084 - processed_pseudogene processed_pseudogene MGP_AJ_T0058557.1 MGP_AJ_G0026694.1 mouse_genomes_project 2 153510351 153527064 - MGP_AJ_P0058557 protein_coding protein_coding MGP_AJ_T0058558.1 MGP_AJ_G0026694.1 mouse_genomes_project 2 153517944 153527014 - MGP_AJ_P0058558 protein_coding protein_coding MGP_AJ_T0058559.1 MGP_AJ_G0026694.1 mouse_genomes_project 2 153520970 153527014 - protein_coding retained_intron MGP_AJ_T0004184.1 MGP_AJ_G0003692.1 mouse_genomes_project 2 171990462 171992193 + Pmepa1os antisense antisense MGP_AJ_T0057594.1 MGP_AJ_G0026439.1 mouse_genomes_project 2 126702531 126807487 + MGP_AJ_P0057594 Mertk protein_coding protein_coding MGP_AJ_T0057595.1 MGP_AJ_G0026439.1 mouse_genomes_project 2 126775872 126807272 + Mertk protein_coding processed_transcript MGP_AJ_T0058866.1 MGP_AJ_G0026744.1 mouse_genomes_project 2 155711992 155784235 - MGP_AJ_P0058866 Mroh8 protein_coding protein_coding MGP_AJ_T0058867.1 MGP_AJ_G0026744.1 mouse_genomes_project 2 155725982 155727396 - Mroh8 protein_coding processed_transcript MGP_AJ_T0058868.1 MGP_AJ_G0026744.1 mouse_genomes_project 2 155745077 155783975 - Mroh8 protein_coding processed_transcript MGP_AJ_T0058869.1 MGP_AJ_G0026744.1 mouse_genomes_project 2 155757252 155759657 - Mroh8 protein_coding processed_transcript MGP_AJ_T0058870.1 MGP_AJ_G0026744.1 mouse_genomes_project 2 155768637 155784235 - Mroh8 protein_coding processed_transcript MGP_AJ_T0056150.1 MGP_AJ_G0026112.1 mouse_genomes_project 2 89140572 89239846 + MGP_AJ_P0056150 Ckap5 protein_coding protein_coding MGP_AJ_T0056151.1 MGP_AJ_G0026112.1 mouse_genomes_project 2 89140788 89169152 + Ckap5 protein_coding processed_transcript MGP_AJ_T0056152.1 MGP_AJ_G0026112.1 mouse_genomes_project 2 89160096 89178948 + Ckap5 protein_coding retained_intron MGP_AJ_T0056153.1 MGP_AJ_G0026112.1 mouse_genomes_project 2 89160098 89239844 + MGP_AJ_P0056153 Ckap5 protein_coding protein_coding MGP_AJ_T0056154.1 MGP_AJ_G0026112.1 mouse_genomes_project 2 89160098 89239844 + MGP_AJ_P0056154 Ckap5 protein_coding protein_coding MGP_AJ_T0056155.1 MGP_AJ_G0026112.1 mouse_genomes_project 2 89160109 89239845 + MGP_AJ_P0056155 Ckap5 protein_coding protein_coding MGP_AJ_T0056156.1 MGP_AJ_G0026112.1 mouse_genomes_project 2 89169027 89178951 + Ckap5 protein_coding retained_intron MGP_AJ_T0056157.1 MGP_AJ_G0026112.1 mouse_genomes_project 2 89209885 89221769 + Ckap5 protein_coding processed_transcript MGP_AJ_T0056158.1 MGP_AJ_G0026112.1 mouse_genomes_project 2 89211208 89215809 + Ckap5 protein_coding retained_intron MGP_AJ_T0059384.1 MGP_AJ_G0026871.1 mouse_genomes_project 2 165507557 165546230 + Cse1l protein_coding processed_transcript MGP_AJ_T0059385.1 MGP_AJ_G0026871.1 mouse_genomes_project 2 165507576 165548069 + MGP_AJ_P0059385 Cse1l protein_coding protein_coding MGP_AJ_T0059386.1 MGP_AJ_G0026871.1 mouse_genomes_project 2 165507628 165547781 + MGP_AJ_P0059386 Cse1l protein_coding nonsense_mediated_decay MGP_AJ_T0059387.1 MGP_AJ_G0026871.1 mouse_genomes_project 2 165516328 165547473 + MGP_AJ_P0059387 Cse1l protein_coding protein_coding MGP_AJ_T0059388.1 MGP_AJ_G0026871.1 mouse_genomes_project 2 165528740 165547488 + MGP_AJ_P0059388 Cse1l protein_coding protein_coding MGP_AJ_T0059389.1 MGP_AJ_G0026871.1 mouse_genomes_project 2 165528775 165534079 + Cse1l protein_coding retained_intron MGP_AJ_T0059390.1 MGP_AJ_G0026871.1 mouse_genomes_project 2 165528934 165536763 + Cse1l protein_coding retained_intron MGP_AJ_T0059391.1 MGP_AJ_G0026871.1 mouse_genomes_project 2 165528978 165539097 + Cse1l protein_coding processed_transcript MGP_AJ_T0059392.1 MGP_AJ_G0026871.1 mouse_genomes_project 2 165536430 165546533 + Cse1l protein_coding retained_intron MGP_AJ_T0059393.1 MGP_AJ_G0026871.1 mouse_genomes_project 2 165536457 165543134 + MGP_AJ_P0059393 Cse1l protein_coding nonsense_mediated_decay MGP_AJ_T0059394.1 MGP_AJ_G0026871.1 mouse_genomes_project 2 165538768 165542930 + Cse1l protein_coding retained_intron MGP_AJ_T0059395.1 MGP_AJ_G0026871.1 mouse_genomes_project 2 165542512 165543499 + Cse1l protein_coding retained_intron MGP_AJ_T0013758.1 MGP_AJ_G0011853.1 mouse_genomes_project 2 129034947 129035583 + processed_pseudogene processed_pseudogene MGP_AJ_T0010345.1 MGP_AJ_G0008467.1 mouse_genomes_project 2 7526689 7527059 + miRNA miRNA MGP_AJ_T0056702.1 MGP_AJ_G0026247.1 mouse_genomes_project 2 110006445 110007791 + MGP_AJ_P0056702 Nop10 protein_coding protein_coding MGP_AJ_T0056666.1 MGP_AJ_G0026214.1 mouse_genomes_project 2 108886845 108887784 + MGP_AJ_P0056666 Olfr1276 protein_coding protein_coding MGP_AJ_T0017731.1 MGP_AJ_G0015371.1 mouse_genomes_project 2 15093914 15096335 - 1810059C17Rik processed_transcript processed_transcript MGP_AJ_T0053761.1 MGP_AJ_G0025532.1 mouse_genomes_project 2 27175635 27202932 - MGP_AJ_P0053761 Zer1 protein_coding protein_coding MGP_AJ_T0053762.1 MGP_AJ_G0025532.1 mouse_genomes_project 2 27175635 27202804 - MGP_AJ_P0053762 Zer1 protein_coding protein_coding MGP_AJ_T0053763.1 MGP_AJ_G0025532.1 mouse_genomes_project 2 27178152 27180123 - Zer1 protein_coding retained_intron MGP_AJ_T0053764.1 MGP_AJ_G0025532.1 mouse_genomes_project 2 27178808 27181092 - Zer1 protein_coding retained_intron MGP_AJ_T0053765.1 MGP_AJ_G0025532.1 mouse_genomes_project 2 27183658 27202935 - Zer1 protein_coding retained_intron MGP_AJ_T0053766.1 MGP_AJ_G0025532.1 mouse_genomes_project 2 27183919 27202929 - Zer1 protein_coding retained_intron MGP_AJ_T0053767.1 MGP_AJ_G0025532.1 mouse_genomes_project 2 27185150 27189124 - Zer1 protein_coding retained_intron MGP_AJ_T0053768.1 MGP_AJ_G0025532.1 mouse_genomes_project 2 27185527 27185993 - Zer1 protein_coding processed_transcript MGP_AJ_T0053769.1 MGP_AJ_G0025532.1 mouse_genomes_project 2 27185865 27186893 - Zer1 protein_coding retained_intron MGP_AJ_T0010336.1 MGP_AJ_G0008458.1 mouse_genomes_project 2 7491050 7491147 + Mir669b miRNA miRNA MGP_AJ_T0010372.1 MGP_AJ_G0008494.1 mouse_genomes_project 2 14014156 14014266 - Gm24933 miRNA miRNA MGP_AJ_T0055397.1 MGP_AJ_G0025820.1 mouse_genomes_project 2 71299813 71302693 - MGP_AJ_P0055397 Atp5g3 protein_coding protein_coding MGP_AJ_T0055398.1 MGP_AJ_G0025820.1 mouse_genomes_project 2 71299813 71302692 - MGP_AJ_P0055398 Atp5g3 protein_coding protein_coding MGP_AJ_T0055399.1 MGP_AJ_G0025820.1 mouse_genomes_project 2 71300097 71302649 - Atp5g3 protein_coding processed_transcript MGP_AJ_T0055400.1 MGP_AJ_G0025820.1 mouse_genomes_project 2 71300549 71301826 - Atp5g3 protein_coding processed_transcript MGP_AJ_T0055401.1 MGP_AJ_G0025820.1 mouse_genomes_project 2 71300684 71302658 - Atp5g3 protein_coding processed_transcript MGP_AJ_T0004172.1 MGP_AJ_G0003683.1 mouse_genomes_project 2 166635426 166636404 + Gm14236 antisense antisense MGP_AJ_T0013872.1 MGP_AJ_G0011967.1 mouse_genomes_project 2 165893556 165893915 - processed_pseudogene processed_pseudogene MGP_AJ_T0055825.1 MGP_AJ_G0025972.1 mouse_genomes_project 2 84748454 84749378 + MGP_AJ_P0055825 Olfr1118 protein_coding protein_coding MGP_AJ_T0055917.1 MGP_AJ_G0026048.1 mouse_genomes_project 2 86822302 86823238 - MGP_AJ_P0055917 Olfr1225 protein_coding protein_coding MGP_AJ_T0054552.1 MGP_AJ_G0025675.1 mouse_genomes_project 2 34734799 34735639 + Gpr21 protein_coding processed_transcript MGP_AJ_T0054554.1 MGP_AJ_G0025675.1 mouse_genomes_project 2 34735093 34739071 + MGP_AJ_P0054554 Gpr21 protein_coding protein_coding MGP_AJ_T0057739.1 MGP_AJ_G0026480.1 mouse_genomes_project 2 128749458 128886693 - MGP_AJ_P0057739 4930402H24Rik protein_coding protein_coding MGP_AJ_T0057740.1 MGP_AJ_G0026480.1 mouse_genomes_project 2 128754070 128763170 - MGP_AJ_P0057740 4930402H24Rik protein_coding nonsense_mediated_decay MGP_AJ_T0057741.1 MGP_AJ_G0026480.1 mouse_genomes_project 2 128755538 128774135 - MGP_AJ_P0057741 4930402H24Rik protein_coding protein_coding MGP_AJ_T0057742.1 MGP_AJ_G0026480.1 mouse_genomes_project 2 128763079 128774402 - 4930402H24Rik protein_coding processed_transcript MGP_AJ_T0057743.1 MGP_AJ_G0026480.1 mouse_genomes_project 2 128780459 128783439 - 4930402H24Rik protein_coding retained_intron MGP_AJ_T0057744.1 MGP_AJ_G0026480.1 mouse_genomes_project 2 128782938 128802002 - 4930402H24Rik protein_coding processed_transcript MGP_AJ_T0057745.1 MGP_AJ_G0026480.1 mouse_genomes_project 2 128782949 128815411 - MGP_AJ_P0057745 4930402H24Rik protein_coding protein_coding MGP_AJ_T0057746.1 MGP_AJ_G0026480.1 mouse_genomes_project 2 128792389 128886779 - 4930402H24Rik protein_coding retained_intron MGP_AJ_T0057747.1 MGP_AJ_G0026480.1 mouse_genomes_project 2 128821893 128822970 - 4930402H24Rik protein_coding processed_transcript MGP_AJ_T0057748.1 MGP_AJ_G0026480.1 mouse_genomes_project 2 128822090 128856076 - 4930402H24Rik protein_coding processed_transcript MGP_AJ_T0057749.1 MGP_AJ_G0026480.1 mouse_genomes_project 2 128827946 128886758 - 4930402H24Rik protein_coding retained_intron MGP_AJ_T0057750.1 MGP_AJ_G0026480.1 mouse_genomes_project 2 128848929 128859463 - 4930402H24Rik protein_coding processed_transcript MGP_AJ_T0057751.1 MGP_AJ_G0026480.1 mouse_genomes_project 2 128850859 128886792 - MGP_AJ_P0057751 4930402H24Rik protein_coding protein_coding MGP_AJ_T0057752.1 MGP_AJ_G0026480.1 mouse_genomes_project 2 128856043 128886784 - MGP_AJ_P0057752 4930402H24Rik protein_coding protein_coding MGP_AJ_T0057753.1 MGP_AJ_G0026480.1 mouse_genomes_project 2 128856078 128886781 - MGP_AJ_P0057753 4930402H24Rik protein_coding protein_coding MGP_AJ_T0057754.1 MGP_AJ_G0026480.1 mouse_genomes_project 2 128858036 128953616 - MGP_AJ_P0057754 4930402H24Rik protein_coding protein_coding MGP_AJ_T0011501.1 MGP_AJ_G0009623.1 mouse_genomes_project 2 63870127 63870411 + Gm23046 misc_RNA misc_RNA MGP_AJ_T0007251.1 MGP_AJ_G0005943.1 mouse_genomes_project 2 74735820 74738077 + Gm13943 lincRNA lincRNA MGP_AJ_T0017759.1 MGP_AJ_G0015388.1 mouse_genomes_project 2 32109174 32112318 + Gm13448 processed_transcript processed_transcript MGP_AJ_T0099778.1 MGP_AJ_G0037744.1 mouse_genomes_project 2 114724635 114724770 - Gm25514 snRNA snRNA MGP_AJ_T0010403.1 MGP_AJ_G0008525.1 mouse_genomes_project 2 29865760 29865833 - Mir3960 miRNA miRNA MGP_AJ_T0001067.1 MGP_AJ_G0000998.1 mouse_genomes_project 2 33450864 33452888 - TEC TEC MGP_AJ_T0004103.1 MGP_AJ_G0003629.1 mouse_genomes_project 2 133386022 133644656 - 9630028H03Rik antisense antisense MGP_AJ_T0004104.1 MGP_AJ_G0003629.1 mouse_genomes_project 2 133641601 133644368 - 9630028H03Rik antisense antisense MGP_AJ_T0054783.1 MGP_AJ_G0025709.1 mouse_genomes_project 2 49469548 49671597 - MGP_AJ_P0054783 Neb protein_coding protein_coding MGP_AJ_T0054784.1 MGP_AJ_G0025709.1 mouse_genomes_project 2 49469563 49667933 - MGP_AJ_P0054784 Neb protein_coding protein_coding MGP_AJ_T0054785.1 MGP_AJ_G0025709.1 mouse_genomes_project 2 49469563 49557476 - MGP_AJ_P0054785 Neb protein_coding protein_coding MGP_AJ_T0054786.1 MGP_AJ_G0025709.1 mouse_genomes_project 2 49470017 49490828 - Neb protein_coding processed_transcript MGP_AJ_T0054787.1 MGP_AJ_G0025709.1 mouse_genomes_project 2 49470158 49663649 - MGP_AJ_P0054787 Neb protein_coding unknown_likely_coding MGP_AJ_T0054788.1 MGP_AJ_G0025709.1 mouse_genomes_project 2 49470161 49509077 - MGP_AJ_P0054788 Neb protein_coding protein_coding MGP_AJ_T0054789.1 MGP_AJ_G0025709.1 mouse_genomes_project 2 49489253 49495897 - Neb protein_coding processed_transcript MGP_AJ_T0054790.1 MGP_AJ_G0025709.1 mouse_genomes_project 2 49506239 49508656 - Neb protein_coding processed_transcript MGP_AJ_T0054791.1 MGP_AJ_G0025709.1 mouse_genomes_project 2 49510508 49524881 - MGP_AJ_P0054791 Neb protein_coding protein_coding MGP_AJ_T0054792.1 MGP_AJ_G0025709.1 mouse_genomes_project 2 49555521 49589785 - MGP_AJ_P0054792 Neb protein_coding protein_coding MGP_AJ_T0054793.1 MGP_AJ_G0025709.1 mouse_genomes_project 2 49652435 49668561 - Neb protein_coding processed_transcript MGP_AJ_T0054794.1 MGP_AJ_G0025709.1 mouse_genomes_project 2 49661632 49671597 - Neb protein_coding processed_transcript MGP_AJ_T0003926.1 MGP_AJ_G0003505.1 mouse_genomes_project 2 23224213 23226794 + Gm27196 antisense antisense MGP_AJ_T0102471.1 MGP_AJ_G0040213.1 mouse_genomes_project 2 82758951 82759847 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0013558.1 MGP_AJ_G0011653.1 mouse_genomes_project 2 56041514 56042377 + processed_pseudogene processed_pseudogene MGP_AJ_T0058095.1 MGP_AJ_G0026557.1 mouse_genomes_project 2 143256748 143726364 + MGP_AJ_P0058095 Slc24a3 protein_coding protein_coding MGP_AJ_T0058096.1 MGP_AJ_G0026557.1 mouse_genomes_project 2 143256913 143603381 + Slc24a3 protein_coding processed_transcript MGP_AJ_T0058097.1 MGP_AJ_G0026557.1 mouse_genomes_project 2 143327569 143726364 + Slc24a3 protein_coding processed_transcript MGP_AJ_T0058098.1 MGP_AJ_G0026557.1 mouse_genomes_project 2 143329930 143724559 + MGP_AJ_P0058098 Slc24a3 protein_coding protein_coding MGP_AJ_T0058099.1 MGP_AJ_G0026557.1 mouse_genomes_project 2 143693996 143701338 + Slc24a3 protein_coding processed_transcript MGP_AJ_T0101040.1 MGP_AJ_G0039006.1 mouse_genomes_project 2 58800553 58800682 + Gm22338 snoRNA snoRNA MGP_AJ_T0013738.1 MGP_AJ_G0011833.1 mouse_genomes_project 2 119213509 119213756 - processed_pseudogene processed_pseudogene MGP_AJ_T0055477.1 MGP_AJ_G0025847.1 mouse_genomes_project 2 74111046 74391698 - MGP_AJ_P0055477 Ttn protein_coding protein_coding MGP_AJ_T0055478.1 MGP_AJ_G0025847.1 mouse_genomes_project 2 74111046 74391698 - MGP_AJ_P0055478 Ttn protein_coding protein_coding MGP_AJ_T0055479.1 MGP_AJ_G0025847.1 mouse_genomes_project 2 74111050 74391790 - MGP_AJ_P0055479 Ttn protein_coding protein_coding MGP_AJ_T0055480.1 MGP_AJ_G0025847.1 mouse_genomes_project 2 74112097 74389425 - MGP_AJ_P0055480 Ttn protein_coding protein_coding MGP_AJ_T0055481.1 MGP_AJ_G0025847.1 mouse_genomes_project 2 74112097 74389425 - MGP_AJ_P0055481 Ttn protein_coding unknown_likely_coding MGP_AJ_T0055482.1 MGP_AJ_G0025847.1 mouse_genomes_project 2 74221288 74345503 - MGP_AJ_P0055482 Ttn protein_coding protein_coding MGP_AJ_T0055483.1 MGP_AJ_G0025847.1 mouse_genomes_project 2 74221796 74302403 - MGP_AJ_P0055483 Ttn protein_coding protein_coding MGP_AJ_T0055484.1 MGP_AJ_G0025847.1 mouse_genomes_project 2 74221830 74280864 - MGP_AJ_P0055484 Ttn protein_coding protein_coding MGP_AJ_T0055485.1 MGP_AJ_G0025847.1 mouse_genomes_project 2 74221831 74280864 - MGP_AJ_P0055485 Ttn protein_coding protein_coding MGP_AJ_T0055486.1 MGP_AJ_G0025847.1 mouse_genomes_project 2 74221831 74280864 - MGP_AJ_P0055486 Ttn protein_coding protein_coding MGP_AJ_T0055487.1 MGP_AJ_G0025847.1 mouse_genomes_project 2 74221831 74280864 - MGP_AJ_P0055487 Ttn protein_coding protein_coding MGP_AJ_T0055488.1 MGP_AJ_G0025847.1 mouse_genomes_project 2 74221849 74280864 - MGP_AJ_P0055488 Ttn protein_coding protein_coding MGP_AJ_T0055489.1 MGP_AJ_G0025847.1 mouse_genomes_project 2 74233485 74238898 - MGP_AJ_P0055489 Ttn protein_coding protein_coding MGP_AJ_T0055490.1 MGP_AJ_G0025847.1 mouse_genomes_project 2 74234884 74253639 - MGP_AJ_P0055490 Ttn protein_coding protein_coding MGP_AJ_T0055491.1 MGP_AJ_G0025847.1 mouse_genomes_project 2 74243739 74244771 - MGP_AJ_P0055491 Ttn protein_coding protein_coding MGP_AJ_T0055492.1 MGP_AJ_G0025847.1 mouse_genomes_project 2 74244317 74246339 - MGP_AJ_P0055492 Ttn protein_coding protein_coding MGP_AJ_T0055493.1 MGP_AJ_G0025847.1 mouse_genomes_project 2 74248450 74251382 - MGP_AJ_P0055493 Ttn protein_coding protein_coding MGP_AJ_T0055494.1 MGP_AJ_G0025847.1 mouse_genomes_project 2 74248450 74249300 - MGP_AJ_P0055494 Ttn protein_coding protein_coding MGP_AJ_T0055495.1 MGP_AJ_G0025847.1 mouse_genomes_project 2 74256709 74259650 - MGP_AJ_P0055495 Ttn protein_coding protein_coding MGP_AJ_T0055496.1 MGP_AJ_G0025847.1 mouse_genomes_project 2 74261750 74283086 - MGP_AJ_P0055496 Ttn protein_coding protein_coding MGP_AJ_T0055497.1 MGP_AJ_G0025847.1 mouse_genomes_project 2 74301228 74301985 - Ttn protein_coding processed_transcript MGP_AJ_T0055498.1 MGP_AJ_G0025847.1 mouse_genomes_project 2 74327206 74391698 - MGP_AJ_P0055498 Ttn protein_coding protein_coding MGP_AJ_T0055499.1 MGP_AJ_G0025847.1 mouse_genomes_project 2 74349186 74351787 - Ttn protein_coding retained_intron MGP_AJ_T0055500.1 MGP_AJ_G0025847.1 mouse_genomes_project 2 74373083 74391790 - Ttn protein_coding retained_intron MGP_AJ_T0055501.1 MGP_AJ_G0025847.1 mouse_genomes_project 2 74373889 74391790 - MGP_AJ_P0055501 Ttn protein_coding protein_coding MGP_AJ_T0055502.1 MGP_AJ_G0025847.1 mouse_genomes_project 2 74381850 74391790 - Ttn protein_coding retained_intron MGP_AJ_T0059418.1 MGP_AJ_G0026875.1 mouse_genomes_project 2 165666914 165669843 + protein_coding antisense MGP_AJ_T0059419.1 MGP_AJ_G0026875.1 mouse_genomes_project 2 165666914 165669842 + MGP_AJ_P0059419 protein_coding protein_coding MGP_AJ_T0059420.1 MGP_AJ_G0026875.1 mouse_genomes_project 2 165666915 165669555 + protein_coding retained_intron MGP_AJ_T0059421.1 MGP_AJ_G0026875.1 mouse_genomes_project 2 165667201 165669363 + protein_coding retained_intron MGP_AJ_T0059422.1 MGP_AJ_G0026875.1 mouse_genomes_project 2 165667203 165669703 + protein_coding retained_intron MGP_AJ_T0059423.1 MGP_AJ_G0026875.1 mouse_genomes_project 2 165667629 165669843 + protein_coding retained_intron MGP_AJ_T0098662.1 MGP_AJ_G0036646.1 mouse_genomes_project 2 164759195 164759300 + Gm22687 rRNA rRNA MGP_AJ_T0101089.1 MGP_AJ_G0039055.1 mouse_genomes_project 2 156893196 156893329 + Gm25187 snoRNA snoRNA MGP_AJ_T0055809.1 MGP_AJ_G0025957.1 mouse_genomes_project 2 84362949 84365007 - MGP_AJ_P0055809 Olfr1098 protein_coding protein_coding MGP_AJ_T0055810.1 MGP_AJ_G0025957.1 mouse_genomes_project 2 84362949 84364186 - MGP_AJ_P0055810 Olfr1098 protein_coding protein_coding MGP_AJ_T0058347.1 MGP_AJ_G0026637.1 mouse_genomes_project 2 150894340 150902645 + MGP_AJ_P0058347 Defb36 protein_coding protein_coding MGP_AJ_T0098652.1 MGP_AJ_G0036636.1 mouse_genomes_project 2 91025540 91025643 - Gm23380 rRNA rRNA MGP_AJ_T0054902.1 MGP_AJ_G0025733.1 mouse_genomes_project 2 57115488 57146025 - MGP_AJ_P0054902 Wdsub1 protein_coding protein_coding MGP_AJ_T0054903.1 MGP_AJ_G0025733.1 mouse_genomes_project 2 57118311 57145988 - MGP_AJ_P0054903 Wdsub1 protein_coding protein_coding MGP_AJ_T0054904.1 MGP_AJ_G0025733.1 mouse_genomes_project 2 57124569 57125972 - Wdsub1 protein_coding processed_transcript MGP_AJ_T0054905.1 MGP_AJ_G0025733.1 mouse_genomes_project 2 57124578 57124926 - Wdsub1 protein_coding processed_transcript MGP_AJ_T0054906.1 MGP_AJ_G0025733.1 mouse_genomes_project 2 57124806 57140227 - MGP_AJ_P0054906 Wdsub1 protein_coding protein_coding MGP_AJ_T0054907.1 MGP_AJ_G0025733.1 mouse_genomes_project 2 57124933 57126807 - Wdsub1 protein_coding processed_transcript MGP_AJ_T0054908.1 MGP_AJ_G0025733.1 mouse_genomes_project 2 57125918 57145998 - Wdsub1 protein_coding processed_transcript MGP_AJ_T0054909.1 MGP_AJ_G0025733.1 mouse_genomes_project 2 57133624 57141605 - MGP_AJ_P0054909 Wdsub1 protein_coding protein_coding MGP_AJ_T0054910.1 MGP_AJ_G0025733.1 mouse_genomes_project 2 57136419 57141787 - Wdsub1 protein_coding processed_transcript MGP_AJ_T0054911.1 MGP_AJ_G0025733.1 mouse_genomes_project 2 57140051 57146027 - MGP_AJ_P0054911 Wdsub1 protein_coding protein_coding MGP_AJ_T0054912.1 MGP_AJ_G0025733.1 mouse_genomes_project 2 57140052 57146015 - MGP_AJ_P0054912 Wdsub1 protein_coding protein_coding MGP_AJ_T0054913.1 MGP_AJ_G0025733.1 mouse_genomes_project 2 57141772 57146032 - Wdsub1 protein_coding processed_transcript MGP_AJ_T0102510.1 MGP_AJ_G0040252.1 mouse_genomes_project 2 104791167 104791360 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0101058.1 MGP_AJ_G0039024.1 mouse_genomes_project 2 109593865 109593996 + Gm26421 snoRNA snoRNA MGP_AJ_T0059578.1 MGP_AJ_G0026917.1 mouse_genomes_project 2 171684654 171700527 + Spo11 protein_coding retained_intron MGP_AJ_T0059579.1 MGP_AJ_G0026917.1 mouse_genomes_project 2 171686767 171700521 + MGP_AJ_P0059579 Spo11 protein_coding protein_coding MGP_AJ_T0059580.1 MGP_AJ_G0026917.1 mouse_genomes_project 2 171686774 171700523 + MGP_AJ_P0059580 Spo11 protein_coding protein_coding MGP_AJ_T0059581.1 MGP_AJ_G0026917.1 mouse_genomes_project 2 171686774 171700532 + MGP_AJ_P0059581 Spo11 protein_coding protein_coding MGP_AJ_T0059582.1 MGP_AJ_G0026917.1 mouse_genomes_project 2 171692814 171698998 + Spo11 protein_coding processed_transcript MGP_AJ_T0013511.1 MGP_AJ_G0011606.1 mouse_genomes_project 2 36904396 36904516 - processed_pseudogene processed_pseudogene MGP_AJ_T0013803.1 MGP_AJ_G0011898.1 mouse_genomes_project 2 144987648 144988251 + processed_pseudogene processed_pseudogene MGP_AJ_T0007270.1 MGP_AJ_G0005960.1 mouse_genomes_project 2 91090934 91107971 + Gm10804 lincRNA lincRNA MGP_AJ_T0007271.1 MGP_AJ_G0005960.1 mouse_genomes_project 2 91090935 91094837 + Gm10804 lincRNA lincRNA MGP_AJ_T0007272.1 MGP_AJ_G0005960.1 mouse_genomes_project 2 91090936 91104500 + Gm10804 lincRNA lincRNA MGP_AJ_T0007273.1 MGP_AJ_G0005960.1 mouse_genomes_project 2 91106538 91106775 + Gm10804 lincRNA lincRNA MGP_AJ_T0007129.1 MGP_AJ_G0005846.1 mouse_genomes_project 2 1111908 1118263 + Gm13189 lincRNA lincRNA MGP_AJ_T0013548.1 MGP_AJ_G0011643.1 mouse_genomes_project 2 52622230 52623256 + processed_pseudogene processed_pseudogene MGP_AJ_T0057719.1 MGP_AJ_G0026475.1 mouse_genomes_project 2 128653722 128670527 - MGP_AJ_P0057719 Fastkd5 protein_coding protein_coding MGP_AJ_T0057720.1 MGP_AJ_G0026475.1 mouse_genomes_project 2 128653724 128670512 - MGP_AJ_P0057720 Fastkd5 protein_coding protein_coding MGP_AJ_T0052962.1 MGP_AJ_G0025390.1 mouse_genomes_project 2 21880225 21889861 - MGP_AJ_P0052962 Arrdc1 protein_coding protein_coding MGP_AJ_T0052963.1 MGP_AJ_G0025390.1 mouse_genomes_project 2 21880225 21889772 - MGP_AJ_P0052963 Arrdc1 protein_coding protein_coding MGP_AJ_T0052964.1 MGP_AJ_G0025390.1 mouse_genomes_project 2 21880228 21889754 - Arrdc1 protein_coding retained_intron MGP_AJ_T0052965.1 MGP_AJ_G0025390.1 mouse_genomes_project 2 21880863 21889776 - MGP_AJ_P0052965 Arrdc1 protein_coding nonsense_mediated_decay MGP_AJ_T0052966.1 MGP_AJ_G0025390.1 mouse_genomes_project 2 21880929 21889754 - Arrdc1 protein_coding retained_intron MGP_AJ_T0052967.1 MGP_AJ_G0025390.1 mouse_genomes_project 2 21881032 21889751 - MGP_AJ_P0052967 Arrdc1 protein_coding nonsense_mediated_decay MGP_AJ_T0052968.1 MGP_AJ_G0025390.1 mouse_genomes_project 2 21881057 21882075 - Arrdc1 protein_coding retained_intron MGP_AJ_T0052969.1 MGP_AJ_G0025390.1 mouse_genomes_project 2 21881197 21889783 - MGP_AJ_P0052969 Arrdc1 protein_coding protein_coding MGP_AJ_T0052970.1 MGP_AJ_G0025390.1 mouse_genomes_project 2 21881546 21882775 - Arrdc1 protein_coding retained_intron MGP_AJ_T0052971.1 MGP_AJ_G0025390.1 mouse_genomes_project 2 21881786 21889663 - MGP_AJ_P0052971 Arrdc1 protein_coding protein_coding MGP_AJ_T0052972.1 MGP_AJ_G0025390.1 mouse_genomes_project 2 21881869 21883003 - Arrdc1 protein_coding processed_transcript MGP_AJ_T0052973.1 MGP_AJ_G0025390.1 mouse_genomes_project 2 21882156 21889797 - Arrdc1 protein_coding retained_intron MGP_AJ_T0058313.1 MGP_AJ_G0026620.1 mouse_genomes_project 2 150574467 150597033 + MGP_AJ_P0058313 Tbc1d20 protein_coding protein_coding MGP_AJ_T0058314.1 MGP_AJ_G0026620.1 mouse_genomes_project 2 150574490 150589451 + MGP_AJ_P0058314 Tbc1d20 protein_coding protein_coding MGP_AJ_T0058315.1 MGP_AJ_G0026620.1 mouse_genomes_project 2 150574511 150597033 + Tbc1d20 protein_coding retained_intron MGP_AJ_T0058316.1 MGP_AJ_G0026620.1 mouse_genomes_project 2 150574819 150589797 + MGP_AJ_P0058316 Tbc1d20 protein_coding protein_coding MGP_AJ_T0058317.1 MGP_AJ_G0026620.1 mouse_genomes_project 2 150589567 150593855 + Tbc1d20 protein_coding retained_intron MGP_AJ_T0102472.1 MGP_AJ_G0040214.1 mouse_genomes_project 2 82955746 82956667 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0101022.1 MGP_AJ_G0038988.1 mouse_genomes_project 2 29362345 29362430 + Gm22192 snoRNA snoRNA MGP_AJ_T0013599.1 MGP_AJ_G0011694.1 mouse_genomes_project 2 70499841 70500640 + processed_pseudogene processed_pseudogene MGP_AJ_T0101080.1 MGP_AJ_G0039046.1 mouse_genomes_project 2 149281359 149281495 - snoRNA snoRNA MGP_AJ_T0058485.1 MGP_AJ_G0026674.1 mouse_genomes_project 2 152493938 152499779 + MGP_AJ_P0058485 Bpifa5 protein_coding protein_coding MGP_AJ_T0001026.1 MGP_AJ_G0000957.1 mouse_genomes_project 2 8255229 8257794 + TEC TEC MGP_AJ_T0013526.1 MGP_AJ_G0011621.1 mouse_genomes_project 2 46131555 46132526 - processed_pseudogene processed_pseudogene MGP_AJ_T0017782.1 MGP_AJ_G0015403.1 mouse_genomes_project 2 70766733 70800197 + D230022J07Rik processed_transcript processed_transcript MGP_AJ_T0056168.1 MGP_AJ_G0026115.1 mouse_genomes_project 2 89269476 89292028 + MGP_AJ_P0056168 Arhgap1 protein_coding protein_coding MGP_AJ_T0056169.1 MGP_AJ_G0026115.1 mouse_genomes_project 2 89269734 89292028 + MGP_AJ_P0056169 Arhgap1 protein_coding protein_coding MGP_AJ_T0056170.1 MGP_AJ_G0026115.1 mouse_genomes_project 2 89269838 89292028 + MGP_AJ_P0056170 Arhgap1 protein_coding protein_coding MGP_AJ_T0056171.1 MGP_AJ_G0026115.1 mouse_genomes_project 2 89271113 89274141 + Arhgap1 protein_coding processed_transcript MGP_AJ_T0056172.1 MGP_AJ_G0026115.1 mouse_genomes_project 2 89271113 89274143 + Arhgap1 protein_coding processed_transcript MGP_AJ_T0056173.1 MGP_AJ_G0026115.1 mouse_genomes_project 2 89271362 89288024 + Arhgap1 protein_coding processed_transcript MGP_AJ_T0056174.1 MGP_AJ_G0026115.1 mouse_genomes_project 2 89272823 89292004 + MGP_AJ_P0056174 Arhgap1 protein_coding protein_coding MGP_AJ_T0056175.1 MGP_AJ_G0026115.1 mouse_genomes_project 2 89288231 89291076 + Arhgap1 protein_coding processed_transcript MGP_AJ_T0056176.1 MGP_AJ_G0026115.1 mouse_genomes_project 2 89289646 89290762 + Arhgap1 protein_coding processed_transcript MGP_AJ_T0003995.1 MGP_AJ_G0003558.1 mouse_genomes_project 2 64759494 64784972 - Gm13601 antisense antisense MGP_AJ_T0056793.1 MGP_AJ_G0026271.1 mouse_genomes_project 2 115042223 115106994 - MGP_AJ_P0056793 Rasgrp1 protein_coding protein_coding MGP_AJ_T0056794.1 MGP_AJ_G0026271.1 mouse_genomes_project 2 115042224 115106870 - MGP_AJ_P0056794 Rasgrp1 protein_coding protein_coding MGP_AJ_T0056795.1 MGP_AJ_G0026271.1 mouse_genomes_project 2 115044770 115106702 - MGP_AJ_P0056795 Rasgrp1 protein_coding protein_coding MGP_AJ_T0056796.1 MGP_AJ_G0026271.1 mouse_genomes_project 2 115044770 115106702 - MGP_AJ_P0056796 Rasgrp1 protein_coding nonsense_mediated_decay MGP_AJ_T0056797.1 MGP_AJ_G0026271.1 mouse_genomes_project 2 115044770 115106702 - MGP_AJ_P0056797 Rasgrp1 protein_coding protein_coding MGP_AJ_T0056798.1 MGP_AJ_G0026271.1 mouse_genomes_project 2 115044770 115106702 - MGP_AJ_P0056798 Rasgrp1 protein_coding protein_coding MGP_AJ_T0056799.1 MGP_AJ_G0026271.1 mouse_genomes_project 2 115061237 115106918 - Rasgrp1 protein_coding retained_intron MGP_AJ_T0056405.1 MGP_AJ_G0026157.1 mouse_genomes_project 2 100077467 100080599 - MGP_AJ_P0056405 Fjx1 protein_coding protein_coding MGP_AJ_T0102461.1 MGP_AJ_G0040203.1 mouse_genomes_project 2 33514878 33515817 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0056471.1 MGP_AJ_G0026168.1 mouse_genomes_project 2 101393519 101428058 - MGP_AJ_P0056471 Caprin1 protein_coding protein_coding MGP_AJ_T0056472.1 MGP_AJ_G0026168.1 mouse_genomes_project 2 101395596 101427513 - MGP_AJ_P0056472 Caprin1 protein_coding protein_coding MGP_AJ_T0056473.1 MGP_AJ_G0026168.1 mouse_genomes_project 2 101397762 101403432 - MGP_AJ_P0056473 Caprin1 protein_coding protein_coding MGP_AJ_T0056474.1 MGP_AJ_G0026168.1 mouse_genomes_project 2 101398467 101402448 - MGP_AJ_P0056474 Caprin1 protein_coding protein_coding MGP_AJ_T0056475.1 MGP_AJ_G0026168.1 mouse_genomes_project 2 101399105 101403335 - Caprin1 protein_coding retained_intron MGP_AJ_T0056476.1 MGP_AJ_G0026168.1 mouse_genomes_project 2 101402365 101404921 - Caprin1 protein_coding retained_intron MGP_AJ_T0056477.1 MGP_AJ_G0026168.1 mouse_genomes_project 2 101403399 101404363 - Caprin1 protein_coding processed_transcript MGP_AJ_T0056478.1 MGP_AJ_G0026168.1 mouse_genomes_project 2 101403648 101410024 - MGP_AJ_P0056478 Caprin1 protein_coding protein_coding MGP_AJ_T0056479.1 MGP_AJ_G0026168.1 mouse_genomes_project 2 101403651 101406663 - Caprin1 protein_coding retained_intron MGP_AJ_T0056480.1 MGP_AJ_G0026168.1 mouse_genomes_project 2 101404122 101406309 - Caprin1 protein_coding processed_transcript MGP_AJ_T0056481.1 MGP_AJ_G0026168.1 mouse_genomes_project 2 101408618 101427342 - Caprin1 protein_coding processed_transcript MGP_AJ_T0056482.1 MGP_AJ_G0026168.1 mouse_genomes_project 2 101410179 101426953 - Caprin1 protein_coding processed_transcript MGP_AJ_T0056483.1 MGP_AJ_G0026168.1 mouse_genomes_project 2 101412944 101427382 - Caprin1 protein_coding retained_intron MGP_AJ_T0056484.1 MGP_AJ_G0026168.1 mouse_genomes_project 2 101413342 101427277 - Caprin1 protein_coding processed_transcript MGP_AJ_T0056485.1 MGP_AJ_G0026168.1 mouse_genomes_project 2 101426860 101428008 - Caprin1 protein_coding retained_intron MGP_AJ_T0055895.1 MGP_AJ_G0026029.1 mouse_genomes_project 2 86410841 86411774 - MGP_AJ_P0055895 Olfr1199 protein_coding protein_coding MGP_AJ_T0102484.1 MGP_AJ_G0040226.1 mouse_genomes_project 2 83927962 83928904 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0010347.1 MGP_AJ_G0008469.1 mouse_genomes_project 2 7527813 7527940 + Gm26398 miRNA miRNA MGP_AJ_T0054309.1 MGP_AJ_G0025612.1 mouse_genomes_project 2 30729694 30812036 - MGP_AJ_P0054309 Lmx1b protein_coding protein_coding MGP_AJ_T0054310.1 MGP_AJ_G0025612.1 mouse_genomes_project 2 30733985 30812022 - MGP_AJ_P0054310 Lmx1b protein_coding protein_coding MGP_AJ_T0054311.1 MGP_AJ_G0025612.1 mouse_genomes_project 2 30736815 30803908 - Lmx1b protein_coding processed_transcript MGP_AJ_T0059324.1 MGP_AJ_G0026861.1 mouse_genomes_project 2 163960047 164032492 - MGP_AJ_P0059324 Slc13a3 protein_coding protein_coding MGP_AJ_T0059325.1 MGP_AJ_G0026861.1 mouse_genomes_project 2 163960314 164032492 - MGP_AJ_P0059325 Slc13a3 protein_coding protein_coding MGP_AJ_T0059326.1 MGP_AJ_G0026861.1 mouse_genomes_project 2 163961724 163964079 - Slc13a3 protein_coding retained_intron MGP_AJ_T0059327.1 MGP_AJ_G0026861.1 mouse_genomes_project 2 163966896 163975305 - Slc13a3 protein_coding retained_intron MGP_AJ_T0059328.1 MGP_AJ_G0026861.1 mouse_genomes_project 2 164001983 164032461 - Slc13a3 protein_coding retained_intron MGP_AJ_T0056217.1 MGP_AJ_G0026123.1 mouse_genomes_project 2 89607967 89650166 - MGP_AJ_P0056217 Creb3l1 protein_coding protein_coding MGP_AJ_T0053425.1 MGP_AJ_G0025474.1 mouse_genomes_project 2 23916261 23920325 - Surf6 protein_coding processed_transcript MGP_AJ_T0053426.1 MGP_AJ_G0025474.1 mouse_genomes_project 2 23916558 23919887 - Surf6 protein_coding processed_transcript MGP_AJ_T0053427.1 MGP_AJ_G0025474.1 mouse_genomes_project 2 23916622 23926955 - Surf6 protein_coding processed_transcript MGP_AJ_T0053428.1 MGP_AJ_G0025474.1 mouse_genomes_project 2 23918148 23930409 - MGP_AJ_P0053428 Surf6 protein_coding protein_coding MGP_AJ_T0053429.1 MGP_AJ_G0025474.1 mouse_genomes_project 2 23918485 23930380 - MGP_AJ_P0053429 Surf6 protein_coding protein_coding MGP_AJ_T0053430.1 MGP_AJ_G0025474.1 mouse_genomes_project 2 23920388 23930320 - Surf6 protein_coding processed_transcript MGP_AJ_T0053431.1 MGP_AJ_G0025474.1 mouse_genomes_project 2 23926623 23927298 - Surf6 protein_coding processed_transcript MGP_AJ_T0057555.1 MGP_AJ_G0026429.1 mouse_genomes_project 2 125624211 125647821 - MGP_AJ_P0057555 Mal protein_coding protein_coding MGP_AJ_T0057556.1 MGP_AJ_G0026429.1 mouse_genomes_project 2 125625859 125647345 - MGP_AJ_P0057556 Mal protein_coding protein_coding MGP_AJ_T0102466.1 MGP_AJ_G0040208.1 mouse_genomes_project 2 34314430 34314684 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0059854.1 MGP_AJ_G0026980.1 mouse_genomes_project 2 180055468 180063106 - MGP_AJ_P0059854 Srms protein_coding protein_coding MGP_AJ_T0059654.1 MGP_AJ_G0026936.1 mouse_genomes_project 2 173200162 173203198 - MGP_AJ_P0059654 Atp5e protein_coding protein_coding MGP_AJ_T0059655.1 MGP_AJ_G0026936.1 mouse_genomes_project 2 173200165 173203142 - Atp5e protein_coding retained_intron MGP_AJ_T0059656.1 MGP_AJ_G0026936.1 mouse_genomes_project 2 173201611 173203182 - Atp5e protein_coding retained_intron MGP_AJ_T0053442.1 MGP_AJ_G0025477.1 mouse_genomes_project 2 23940912 23942291 - Surf1 protein_coding retained_intron MGP_AJ_T0053443.1 MGP_AJ_G0025477.1 mouse_genomes_project 2 23940914 23944000 - MGP_AJ_P0053443 Surf1 protein_coding nonsense_mediated_decay MGP_AJ_T0053444.1 MGP_AJ_G0025477.1 mouse_genomes_project 2 23940914 23943832 - MGP_AJ_P0053444 Surf1 protein_coding nonsense_mediated_decay MGP_AJ_T0053445.1 MGP_AJ_G0025477.1 mouse_genomes_project 2 23940914 23944062 - MGP_AJ_P0053445 Surf1 protein_coding protein_coding MGP_AJ_T0053446.1 MGP_AJ_G0025477.1 mouse_genomes_project 2 23941108 23943852 - MGP_AJ_P0053446 Surf1 protein_coding nonsense_mediated_decay MGP_AJ_T0053447.1 MGP_AJ_G0025477.1 mouse_genomes_project 2 23941108 23943877 - MGP_AJ_P0053447 Surf1 protein_coding protein_coding MGP_AJ_T0053448.1 MGP_AJ_G0025477.1 mouse_genomes_project 2 23941762 23943843 - Surf1 protein_coding retained_intron MGP_AJ_T0053449.1 MGP_AJ_G0025477.1 mouse_genomes_project 2 23942006 23943024 - Surf1 protein_coding retained_intron MGP_AJ_T0053450.1 MGP_AJ_G0025477.1 mouse_genomes_project 2 23942389 23943864 - MGP_AJ_P0053450 Surf1 protein_coding nonsense_mediated_decay MGP_AJ_T0053451.1 MGP_AJ_G0025477.1 mouse_genomes_project 2 23942988 23943877 - MGP_AJ_P0053451 Surf1 protein_coding protein_coding MGP_AJ_T0053749.1 MGP_AJ_G0025530.1 mouse_genomes_project 2 27153938 27157380 + MGP_AJ_P0053749 Pkn3 protein_coding protein_coding MGP_AJ_T0053750.1 MGP_AJ_G0025530.1 mouse_genomes_project 2 27153997 27169366 + Pkn3 protein_coding retained_intron MGP_AJ_T0053751.1 MGP_AJ_G0025530.1 mouse_genomes_project 2 27154467 27156237 + MGP_AJ_P0053751 Pkn3 protein_coding protein_coding MGP_AJ_T0053752.1 MGP_AJ_G0025530.1 mouse_genomes_project 2 27154838 27169372 + MGP_AJ_P0053752 Pkn3 protein_coding protein_coding MGP_AJ_T0053753.1 MGP_AJ_G0025530.1 mouse_genomes_project 2 27154952 27163900 + Pkn3 protein_coding retained_intron MGP_AJ_T0053754.1 MGP_AJ_G0025530.1 mouse_genomes_project 2 27155008 27169375 + Pkn3 protein_coding retained_intron MGP_AJ_T0053755.1 MGP_AJ_G0025530.1 mouse_genomes_project 2 27157105 27159476 + Pkn3 protein_coding retained_intron MGP_AJ_T0053756.1 MGP_AJ_G0025530.1 mouse_genomes_project 2 27162998 27165389 + Pkn3 protein_coding retained_intron MGP_AJ_T0053528.1 MGP_AJ_G0025492.1 mouse_genomes_project 2 24551936 24557433 + Wdr5 protein_coding processed_transcript MGP_AJ_T0053529.1 MGP_AJ_G0025492.1 mouse_genomes_project 2 24551936 24574023 + MGP_AJ_P0053529 Wdr5 protein_coding protein_coding MGP_AJ_T0053530.1 MGP_AJ_G0025492.1 mouse_genomes_project 2 24556540 24572531 + MGP_AJ_P0053530 Wdr5 protein_coding protein_coding MGP_AJ_T0053531.1 MGP_AJ_G0025492.1 mouse_genomes_project 2 24565265 24570843 + Wdr5 protein_coding processed_transcript MGP_AJ_T0007388.1 MGP_AJ_G0006054.1 mouse_genomes_project 2 161662516 161683782 + Gm11454 lincRNA lincRNA MGP_AJ_T0010387.1 MGP_AJ_G0008509.1 mouse_genomes_project 2 25789426 25789500 + Mir3088 miRNA miRNA MGP_AJ_T0010426.1 MGP_AJ_G0008548.1 mouse_genomes_project 2 82126798 82126862 - Mir130a miRNA miRNA MGP_AJ_T0007131.1 MGP_AJ_G0005848.1 mouse_genomes_project 2 3125380 3132581 + Gm10857 lincRNA lincRNA MGP_AJ_T0007132.1 MGP_AJ_G0005848.1 mouse_genomes_project 2 3125394 3132526 + Gm10857 lincRNA lincRNA MGP_AJ_T0010390.1 MGP_AJ_G0008512.1 mouse_genomes_project 2 26917647 26917712 + Mir219b miRNA miRNA MGP_AJ_T0013708.1 MGP_AJ_G0011803.1 mouse_genomes_project 2 106086186 106086814 - processed_pseudogene processed_pseudogene MGP_AJ_T0057067.1 MGP_AJ_G0026329.1 mouse_genomes_project 2 118321688 118380620 - MGP_AJ_P0057067 Zfp106 protein_coding unknown_likely_coding MGP_AJ_T0057068.1 MGP_AJ_G0026329.1 mouse_genomes_project 2 118324843 118355388 - MGP_AJ_P0057068 Zfp106 protein_coding protein_coding MGP_AJ_T0057069.1 MGP_AJ_G0026329.1 mouse_genomes_project 2 118325570 118328065 - Zfp106 protein_coding retained_intron MGP_AJ_T0057070.1 MGP_AJ_G0026329.1 mouse_genomes_project 2 118334052 118335748 - Zfp106 protein_coding retained_intron MGP_AJ_T0057071.1 MGP_AJ_G0026329.1 mouse_genomes_project 2 118337912 118339833 - MGP_AJ_P0057071 Zfp106 protein_coding protein_coding MGP_AJ_T0057072.1 MGP_AJ_G0026329.1 mouse_genomes_project 2 118341476 118380624 - Zfp106 protein_coding retained_intron MGP_AJ_T0057073.1 MGP_AJ_G0026329.1 mouse_genomes_project 2 118341940 118343725 - Zfp106 protein_coding retained_intron MGP_AJ_T0057074.1 MGP_AJ_G0026329.1 mouse_genomes_project 2 118343549 118347272 - MGP_AJ_P0057074 Zfp106 protein_coding nonsense_mediated_decay MGP_AJ_T0057075.1 MGP_AJ_G0026329.1 mouse_genomes_project 2 118347099 118380653 - MGP_AJ_P0057075 Zfp106 protein_coding protein_coding MGP_AJ_T0057076.1 MGP_AJ_G0026329.1 mouse_genomes_project 2 118350961 118370542 - MGP_AJ_P0057076 Zfp106 protein_coding protein_coding MGP_AJ_T0057077.1 MGP_AJ_G0026329.1 mouse_genomes_project 2 118351094 118380644 - Zfp106 protein_coding processed_transcript MGP_AJ_T0055925.1 MGP_AJ_G0026055.1 mouse_genomes_project 2 86961922 86962840 - MGP_AJ_P0055925 Olfr1233 protein_coding protein_coding MGP_AJ_T0013663.1 MGP_AJ_G0011758.1 mouse_genomes_project 2 89336808 89338069 - processed_pseudogene processed_pseudogene MGP_AJ_T0013813.1 MGP_AJ_G0011908.1 mouse_genomes_project 2 147484743 147486461 - processed_pseudogene processed_pseudogene MGP_AJ_T0056538.1 MGP_AJ_G0026182.1 mouse_genomes_project 2 102379945 102402019 - MGP_AJ_P0056538 Depdc7 protein_coding protein_coding MGP_AJ_T0056539.1 MGP_AJ_G0026182.1 mouse_genomes_project 2 102380742 102381317 - Depdc7 protein_coding retained_intron MGP_AJ_T0004173.1 MGP_AJ_G0003684.1 mouse_genomes_project 2 169030056 169054594 + Bcas1os2 antisense antisense MGP_AJ_T0053291.1 MGP_AJ_G0025453.1 mouse_genomes_project 2 23011883 23021204 - Ubac1 protein_coding processed_transcript MGP_AJ_T0053292.1 MGP_AJ_G0025453.1 mouse_genomes_project 2 23011883 23035053 - MGP_AJ_P0053292 Ubac1 protein_coding protein_coding MGP_AJ_T0053293.1 MGP_AJ_G0025453.1 mouse_genomes_project 2 23012146 23022515 - Ubac1 protein_coding processed_transcript MGP_AJ_T0053294.1 MGP_AJ_G0025453.1 mouse_genomes_project 2 23018687 23029618 - MGP_AJ_P0053294 Ubac1 protein_coding protein_coding MGP_AJ_T0053295.1 MGP_AJ_G0025453.1 mouse_genomes_project 2 23019810 23034838 - MGP_AJ_P0053295 Ubac1 protein_coding protein_coding MGP_AJ_T0053296.1 MGP_AJ_G0025453.1 mouse_genomes_project 2 23022186 23024245 - Ubac1 protein_coding processed_transcript MGP_AJ_T0053297.1 MGP_AJ_G0025453.1 mouse_genomes_project 2 23023826 23030784 - Ubac1 protein_coding processed_transcript MGP_AJ_T0053298.1 MGP_AJ_G0025453.1 mouse_genomes_project 2 23028203 23034872 - Ubac1 protein_coding processed_transcript MGP_AJ_T0053299.1 MGP_AJ_G0025453.1 mouse_genomes_project 2 23029270 23034908 - Ubac1 protein_coding processed_transcript MGP_AJ_T0013411.1 MGP_AJ_G0011506.1 mouse_genomes_project 2 1921871 1922182 + processed_pseudogene processed_pseudogene MGP_AJ_T0004168.1 MGP_AJ_G0003679.1 mouse_genomes_project 2 164443016 164445037 + Gm11465 antisense antisense MGP_AJ_T0010421.1 MGP_AJ_G0008543.1 mouse_genomes_project 2 73046732 73046806 + Gm24574 miRNA miRNA MGP_AJ_T0017868.1 MGP_AJ_G0015447.1 mouse_genomes_project 2 128583304 128603240 - 4930473A02Rik processed_transcript processed_transcript MGP_AJ_T0054740.1 MGP_AJ_G0025700.1 mouse_genomes_project 2 47121794 47285861 + MGP_AJ_P0054740 Lypd6b protein_coding protein_coding MGP_AJ_T0054741.1 MGP_AJ_G0025700.1 mouse_genomes_project 2 47121837 47267996 + Lypd6b protein_coding processed_transcript MGP_AJ_T0054742.1 MGP_AJ_G0025700.1 mouse_genomes_project 2 47175205 47279549 + Lypd6b protein_coding processed_transcript MGP_AJ_T0054743.1 MGP_AJ_G0025700.1 mouse_genomes_project 2 47267901 47285861 + MGP_AJ_P0054743 Lypd6b protein_coding unknown_likely_coding MGP_AJ_T0013671.1 MGP_AJ_G0011766.1 mouse_genomes_project 2 92238281 92238882 - processed_pseudogene processed_pseudogene MGP_AJ_T0013591.1 MGP_AJ_G0011686.1 mouse_genomes_project 2 68718015 68719500 - processed_pseudogene processed_pseudogene MGP_AJ_T0007440.1 MGP_AJ_G0006099.1 mouse_genomes_project 2 179677463 179741497 - Gm14342 lincRNA lincRNA MGP_AJ_T0054957.1 MGP_AJ_G0025740.1 mouse_genomes_project 2 58039408 58172039 - MGP_AJ_P0054957 Rbms1 protein_coding protein_coding MGP_AJ_T0054958.1 MGP_AJ_G0025740.1 mouse_genomes_project 2 58039414 58254978 - MGP_AJ_P0054958 Rbms1 protein_coding protein_coding MGP_AJ_T0054959.1 MGP_AJ_G0025740.1 mouse_genomes_project 2 58042812 58051631 - Rbms1 protein_coding processed_transcript MGP_AJ_T0054960.1 MGP_AJ_G0025740.1 mouse_genomes_project 2 58044715 58070128 - Rbms1 protein_coding processed_transcript MGP_AJ_T0054961.1 MGP_AJ_G0025740.1 mouse_genomes_project 2 58132968 58178978 - Rbms1 protein_coding processed_transcript MGP_AJ_T0054962.1 MGP_AJ_G0025740.1 mouse_genomes_project 2 58132968 58179953 - Rbms1 protein_coding processed_transcript MGP_AJ_T0054963.1 MGP_AJ_G0025740.1 mouse_genomes_project 2 58179134 58179431 - Rbms1 protein_coding processed_transcript MGP_AJ_T0054964.1 MGP_AJ_G0025740.1 mouse_genomes_project 2 58179346 58179919 - Rbms1 protein_coding processed_transcript MGP_AJ_T0056523.1 MGP_AJ_G0026179.1 mouse_genomes_project 2 102252653 102326750 + MGP_AJ_P0056523 Cstf3 protein_coding protein_coding MGP_AJ_T0056524.1 MGP_AJ_G0026179.1 mouse_genomes_project 2 102252662 102272294 + Cstf3 protein_coding retained_intron MGP_AJ_T0056525.1 MGP_AJ_G0026179.1 mouse_genomes_project 2 102252757 102270301 + Cstf3 protein_coding retained_intron MGP_AJ_T0056526.1 MGP_AJ_G0026179.1 mouse_genomes_project 2 102284457 102322119 + MGP_AJ_P0056526 Cstf3 protein_coding unknown_likely_coding MGP_AJ_T0056527.1 MGP_AJ_G0026179.1 mouse_genomes_project 2 102317010 102324759 + Cstf3 protein_coding processed_transcript MGP_AJ_T0056529.1 MGP_AJ_G0026179.1 mouse_genomes_project 2 102324458 102325500 + Cstf3 protein_coding processed_transcript MGP_AJ_T0056530.1 MGP_AJ_G0026179.1 mouse_genomes_project 2 102324986 102326060 + Cstf3 protein_coding processed_transcript MGP_AJ_T0004013.1 MGP_AJ_G0003569.1 mouse_genomes_project 2 70750674 70759061 + Gm13709 antisense antisense MGP_AJ_T0010359.1 MGP_AJ_G0008481.1 mouse_genomes_project 2 7534512 7534620 + Gm26092 miRNA miRNA MGP_AJ_T0055791.1 MGP_AJ_G0025940.1 mouse_genomes_project 2 83810846 83811788 - MGP_AJ_P0055791 Olfr1061 protein_coding protein_coding MGP_AJ_T0003990.1 MGP_AJ_G0003554.1 mouse_genomes_project 2 63226278 63235793 - Gm13617 antisense antisense MGP_AJ_T0056673.1 MGP_AJ_G0026221.1 mouse_genomes_project 2 109019028 109045252 + MGP_AJ_P0056673 protein_coding protein_coding MGP_AJ_T0004161.1 MGP_AJ_G0003675.1 mouse_genomes_project 2 163291177 163308272 - Gm11457 antisense antisense MGP_AJ_T0004162.1 MGP_AJ_G0003675.1 mouse_genomes_project 2 163291187 163308277 - Gm11457 antisense antisense MGP_AJ_T0004163.1 MGP_AJ_G0003675.1 mouse_genomes_project 2 163291199 163308319 - Gm11457 antisense antisense MGP_AJ_T0055417.1 MGP_AJ_G0025823.1 mouse_genomes_project 2 72049557 72052843 + MGP_AJ_P0055417 Hoxd13 protein_coding protein_coding MGP_AJ_T0055148.1 MGP_AJ_G0025776.1 mouse_genomes_project 2 66710244 66876553 - MGP_AJ_P0055148 Lrp2 protein_coding protein_coding MGP_AJ_T0055149.1 MGP_AJ_G0025776.1 mouse_genomes_project 2 66794958 66876517 - MGP_AJ_P0055149 Lrp2 protein_coding protein_coding MGP_AJ_T0055150.1 MGP_AJ_G0025776.1 mouse_genomes_project 2 66796377 66797901 - Lrp2 protein_coding processed_transcript MGP_AJ_T0055151.1 MGP_AJ_G0025776.1 mouse_genomes_project 2 66815392 66876517 - MGP_AJ_P0055151 Lrp2 protein_coding protein_coding MGP_AJ_T0007403.1 MGP_AJ_G0006067.1 mouse_genomes_project 2 166310386 166348169 + A530013C23Rik lincRNA lincRNA MGP_AJ_T0007404.1 MGP_AJ_G0006067.1 mouse_genomes_project 2 166310390 166316983 + A530013C23Rik lincRNA lincRNA MGP_AJ_T0056552.1 MGP_AJ_G0026187.1 mouse_genomes_project 2 102756275 102758016 + MGP_AJ_P0056552 Gm11060 protein_coding protein_coding MGP_AJ_T0011494.1 MGP_AJ_G0009616.1 mouse_genomes_project 2 37850712 37850882 - Gm27348 misc_RNA misc_RNA MGP_AJ_T0054482.1 MGP_AJ_G0025638.1 mouse_genomes_project 2 33314094 33334009 - MGP_AJ_P0054482 Rbm18 protein_coding protein_coding MGP_AJ_T0054483.1 MGP_AJ_G0025638.1 mouse_genomes_project 2 33315615 33334001 - MGP_AJ_P0054483 Rbm18 protein_coding nonsense_mediated_decay MGP_AJ_T0054484.1 MGP_AJ_G0025638.1 mouse_genomes_project 2 33315790 33334040 - MGP_AJ_P0054484 Rbm18 protein_coding nonsense_mediated_decay MGP_AJ_T0054485.1 MGP_AJ_G0025638.1 mouse_genomes_project 2 33323538 33334036 - Rbm18 protein_coding retained_intron MGP_AJ_T0052344.1 MGP_AJ_G0025286.1 mouse_genomes_project 2 438632 463489 - MGP_AJ_P0052344 protein_coding protein_coding MGP_AJ_T0052345.1 MGP_AJ_G0025286.1 mouse_genomes_project 2 438758 439945 - protein_coding retained_intron MGP_AJ_T0052346.1 MGP_AJ_G0025286.1 mouse_genomes_project 2 440740 442060 - protein_coding retained_intron MGP_AJ_T0052347.1 MGP_AJ_G0025286.1 mouse_genomes_project 2 445963 448208 - protein_coding retained_intron MGP_AJ_T0052348.1 MGP_AJ_G0025286.1 mouse_genomes_project 2 450604 453098 - protein_coding retained_intron MGP_AJ_T0052349.1 MGP_AJ_G0025286.1 mouse_genomes_project 2 454590 463432 - MGP_AJ_P0052349 protein_coding nonsense_mediated_decay MGP_AJ_T0052350.1 MGP_AJ_G0025286.1 mouse_genomes_project 2 456472 463465 - MGP_AJ_P0052350 protein_coding nonsense_mediated_decay MGP_AJ_T0052351.1 MGP_AJ_G0025286.1 mouse_genomes_project 2 461562 463418 - protein_coding retained_intron MGP_AJ_T0098654.1 MGP_AJ_G0036638.1 mouse_genomes_project 2 103676003 103676119 + n-R5s201 rRNA rRNA MGP_AJ_T0057755.1 MGP_AJ_G0026481.1 mouse_genomes_project 2 128953704 129077398 + MGP_AJ_P0057755 Atrn protein_coding protein_coding MGP_AJ_T0057756.1 MGP_AJ_G0026481.1 mouse_genomes_project 2 128953710 129052475 + Atrn protein_coding retained_intron MGP_AJ_T0057757.1 MGP_AJ_G0026481.1 mouse_genomes_project 2 128954140 128983031 + Atrn protein_coding retained_intron MGP_AJ_T0057758.1 MGP_AJ_G0026481.1 mouse_genomes_project 2 129029746 129041539 + Atrn protein_coding retained_intron MGP_AJ_T0057759.1 MGP_AJ_G0026481.1 mouse_genomes_project 2 129043132 129052503 + Atrn protein_coding retained_intron MGP_AJ_T0055863.1 MGP_AJ_G0026000.1 mouse_genomes_project 2 85441771 85442728 + MGP_AJ_P0055863 Olfr1153 protein_coding protein_coding MGP_AJ_T0054988.1 MGP_AJ_G0025744.1 mouse_genomes_project 2 59358268 59633717 + MGP_AJ_P0054988 Slc4a10 protein_coding protein_coding MGP_AJ_T0054989.1 MGP_AJ_G0025744.1 mouse_genomes_project 2 59358391 59631810 + Slc4a10 protein_coding processed_transcript MGP_AJ_T0054990.1 MGP_AJ_G0025744.1 mouse_genomes_project 2 59358391 59633717 + MGP_AJ_P0054990 Slc4a10 protein_coding protein_coding MGP_AJ_T0054991.1 MGP_AJ_G0025744.1 mouse_genomes_project 2 59358451 59633717 + MGP_AJ_P0054991 Slc4a10 protein_coding protein_coding MGP_AJ_T0054992.1 MGP_AJ_G0025744.1 mouse_genomes_project 2 59460794 59471177 + Slc4a10 protein_coding processed_transcript MGP_AJ_T0054993.1 MGP_AJ_G0025744.1 mouse_genomes_project 2 59573808 59575544 + Slc4a10 protein_coding processed_transcript MGP_AJ_T0054994.1 MGP_AJ_G0025744.1 mouse_genomes_project 2 59624396 59632364 + Slc4a10 protein_coding processed_transcript MGP_AJ_T0056762.1 MGP_AJ_G0026266.1 mouse_genomes_project 2 113350670 113551438 + MGP_AJ_P0056762 BC052040 protein_coding protein_coding MGP_AJ_T0056763.1 MGP_AJ_G0026266.1 mouse_genomes_project 2 113350687 113551438 + MGP_AJ_P0056763 BC052040 protein_coding protein_coding MGP_AJ_T0056764.1 MGP_AJ_G0026266.1 mouse_genomes_project 2 113350755 113408533 + BC052040 protein_coding processed_transcript MGP_AJ_T0007244.1 MGP_AJ_G0005936.1 mouse_genomes_project 2 72133638 72134699 + Gm14424 lincRNA lincRNA MGP_AJ_T0003970.1 MGP_AJ_G0003539.1 mouse_genomes_project 2 36246756 36248302 - Gm13496 antisense antisense MGP_AJ_T0007412.1 MGP_AJ_G0006074.1 mouse_genomes_project 2 166923106 166929209 - Gm14262 lincRNA lincRNA MGP_AJ_T0056697.1 MGP_AJ_G0026245.1 mouse_genomes_project 2 109983790 109991617 + MGP_AJ_P0056697 Lpcat4 protein_coding protein_coding MGP_AJ_T0056698.1 MGP_AJ_G0026245.1 mouse_genomes_project 2 109985839 109988466 + Lpcat4 protein_coding processed_transcript MGP_AJ_T0056699.1 MGP_AJ_G0026245.1 mouse_genomes_project 2 109986326 109987116 + Lpcat4 protein_coding processed_transcript MGP_AJ_T0056700.1 MGP_AJ_G0026245.1 mouse_genomes_project 2 109988990 109991479 + Lpcat4 protein_coding processed_transcript MGP_AJ_T0053086.1 MGP_AJ_G0025412.1 mouse_genomes_project 2 22251621 22265207 + MGP_AJ_P0053086 Anapc2 protein_coding protein_coding MGP_AJ_T0053087.1 MGP_AJ_G0025412.1 mouse_genomes_project 2 22251726 22255686 + Anapc2 protein_coding processed_transcript MGP_AJ_T0053088.1 MGP_AJ_G0025412.1 mouse_genomes_project 2 22252609 22257720 + MGP_AJ_P0053088 Anapc2 protein_coding protein_coding MGP_AJ_T0053089.1 MGP_AJ_G0025412.1 mouse_genomes_project 2 22258307 22259768 + Anapc2 protein_coding processed_transcript MGP_AJ_T0003896.1 MGP_AJ_G0003481.1 mouse_genomes_project 2 3877525 3880156 + Gm13389 antisense antisense MGP_AJ_T0017908.1 MGP_AJ_G0015465.1 mouse_genomes_project 2 161178431 161184367 + 9430021M05Rik processed_transcript processed_transcript MGP_AJ_T0013809.1 MGP_AJ_G0011904.1 mouse_genomes_project 2 145762155 145763022 - processed_pseudogene processed_pseudogene MGP_AJ_T0055931.1 MGP_AJ_G0026059.1 mouse_genomes_project 2 87066649 87067594 - MGP_AJ_P0055931 Olfr1240 protein_coding protein_coding MGP_AJ_T0011519.1 MGP_AJ_G0009641.1 mouse_genomes_project 2 154862095 154862311 + Gm22316 misc_RNA misc_RNA MGP_AJ_T0004066.1 MGP_AJ_G0003602.1 mouse_genomes_project 2 116071112 116074357 + 1700054M17Rik antisense antisense MGP_AJ_T0059152.1 MGP_AJ_G0026816.1 mouse_genomes_project 2 162930865 162942453 + Rbpjl protein_coding retained_intron MGP_AJ_T0059153.1 MGP_AJ_G0026816.1 mouse_genomes_project 2 162930918 162943117 + MGP_AJ_P0059153 Rbpjl protein_coding protein_coding MGP_AJ_T0059154.1 MGP_AJ_G0026816.1 mouse_genomes_project 2 162930933 162939086 + Rbpjl protein_coding processed_transcript MGP_AJ_T0058553.1 MGP_AJ_G0026693.1 mouse_genomes_project 2 153471078 153501668 + MGP_AJ_P0058553 a protein_coding protein_coding MGP_AJ_T0058554.1 MGP_AJ_G0026693.1 mouse_genomes_project 2 153471137 153502048 + MGP_AJ_P0058554 a protein_coding protein_coding MGP_AJ_T0058555.1 MGP_AJ_G0026693.1 mouse_genomes_project 2 153496523 153502047 + MGP_AJ_P0058555 a protein_coding protein_coding MGP_AJ_T0058556.1 MGP_AJ_G0026693.1 mouse_genomes_project 2 153498526 153502047 + a protein_coding retained_intron MGP_AJ_T0056693.1 MGP_AJ_G0026241.1 mouse_genomes_project 2 109787028 109787982 - MGP_AJ_P0056693 Olfr1312 protein_coding protein_coding MGP_AJ_T0007341.1 MGP_AJ_G0006014.1 mouse_genomes_project 2 131512083 131514750 + Gm14100 lincRNA lincRNA MGP_AJ_T0054430.1 MGP_AJ_G0025628.1 mouse_genomes_project 2 32451708 32503200 + MGP_AJ_P0054430 Gsn protein_coding protein_coding MGP_AJ_T0054431.1 MGP_AJ_G0025628.1 mouse_genomes_project 2 32451712 32498561 + MGP_AJ_P0054431 Gsn protein_coding protein_coding MGP_AJ_T0054432.1 MGP_AJ_G0025628.1 mouse_genomes_project 2 32451724 32488879 + MGP_AJ_P0054432 Gsn protein_coding protein_coding MGP_AJ_T0054433.1 MGP_AJ_G0025628.1 mouse_genomes_project 2 32451737 32488877 + MGP_AJ_P0054433 Gsn protein_coding protein_coding MGP_AJ_T0054434.1 MGP_AJ_G0025628.1 mouse_genomes_project 2 32451777 32485757 + MGP_AJ_P0054434 Gsn protein_coding protein_coding MGP_AJ_T0054435.1 MGP_AJ_G0025628.1 mouse_genomes_project 2 32477689 32503202 + MGP_AJ_P0054435 Gsn protein_coding protein_coding MGP_AJ_T0054436.1 MGP_AJ_G0025628.1 mouse_genomes_project 2 32477822 32480335 + Gsn protein_coding retained_intron MGP_AJ_T0054490.1 MGP_AJ_G0025640.1 mouse_genomes_project 2 33432621 33454430 + MGP_AJ_P0054490 Ptgs1 protein_coding protein_coding MGP_AJ_T0054491.1 MGP_AJ_G0025640.1 mouse_genomes_project 2 33432751 33440225 + Ptgs1 protein_coding processed_transcript MGP_AJ_T0054492.1 MGP_AJ_G0025640.1 mouse_genomes_project 2 33438410 33454427 + Ptgs1 protein_coding processed_transcript MGP_AJ_T0054493.1 MGP_AJ_G0025640.1 mouse_genomes_project 2 33442874 33443630 + Ptgs1 protein_coding retained_intron MGP_AJ_T0054494.1 MGP_AJ_G0025640.1 mouse_genomes_project 2 33444636 33447367 + Ptgs1 protein_coding retained_intron MGP_AJ_T0001084.1 MGP_AJ_G0001013.1 mouse_genomes_project 2 66179353 66182580 + TEC TEC MGP_AJ_T0010468.1 MGP_AJ_G0008590.1 mouse_genomes_project 2 154803533 154803629 + Gm22759 miRNA miRNA MGP_AJ_T0056611.1 MGP_AJ_G0026198.1 mouse_genomes_project 2 104954520 104962366 + MGP_AJ_P0056611 Kcna4 protein_coding protein_coding MGP_AJ_T0056612.1 MGP_AJ_G0026198.1 mouse_genomes_project 2 104955276 104958336 + Kcna4 protein_coding processed_transcript MGP_AJ_T0054387.1 MGP_AJ_G0025623.1 mouse_genomes_project 2 32131762 32148630 - MGP_AJ_P0054387 Traf1 protein_coding protein_coding MGP_AJ_T0054388.1 MGP_AJ_G0025623.1 mouse_genomes_project 2 32133309 32152050 - MGP_AJ_P0054388 Traf1 protein_coding protein_coding MGP_AJ_T0054389.1 MGP_AJ_G0025623.1 mouse_genomes_project 2 32133311 32152237 - MGP_AJ_P0054389 Traf1 protein_coding protein_coding MGP_AJ_T0054390.1 MGP_AJ_G0025623.1 mouse_genomes_project 2 32138017 32152047 - Traf1 protein_coding processed_transcript MGP_AJ_T0054391.1 MGP_AJ_G0025623.1 mouse_genomes_project 2 32146539 32148603 - MGP_AJ_P0054391 Traf1 protein_coding protein_coding MGP_AJ_T0054392.1 MGP_AJ_G0025623.1 mouse_genomes_project 2 32146648 32148628 - Traf1 protein_coding retained_intron MGP_AJ_T0054393.1 MGP_AJ_G0025623.1 mouse_genomes_project 2 32146660 32149372 - Traf1 protein_coding processed_transcript MGP_AJ_T0054394.1 MGP_AJ_G0025623.1 mouse_genomes_project 2 32148013 32152062 - Traf1 protein_coding retained_intron MGP_AJ_T0054395.1 MGP_AJ_G0025623.1 mouse_genomes_project 2 32148618 32152027 - Traf1 protein_coding processed_transcript MGP_AJ_T0013799.1 MGP_AJ_G0011894.1 mouse_genomes_project 2 143594632 143595096 - processed_pseudogene processed_pseudogene MGP_AJ_T0004089.1 MGP_AJ_G0003620.1 mouse_genomes_project 2 129206023 129217829 + Gm14232 antisense antisense MGP_AJ_T0001075.1 MGP_AJ_G0001006.1 mouse_genomes_project 2 36093389 36096752 + TEC TEC MGP_AJ_T0013751.1 MGP_AJ_G0011846.1 mouse_genomes_project 2 126609042 126609252 + processed_pseudogene processed_pseudogene MGP_AJ_T0058537.1 MGP_AJ_G0026691.1 mouse_genomes_project 2 153202803 153282081 + MGP_AJ_P0058537 Raly protein_coding protein_coding MGP_AJ_T0058538.1 MGP_AJ_G0026691.1 mouse_genomes_project 2 153202813 153278459 + MGP_AJ_P0058538 Raly protein_coding protein_coding MGP_AJ_T0058539.1 MGP_AJ_G0026691.1 mouse_genomes_project 2 153202817 153282097 + MGP_AJ_P0058539 Raly protein_coding protein_coding MGP_AJ_T0058540.1 MGP_AJ_G0026691.1 mouse_genomes_project 2 153202825 153276556 + MGP_AJ_P0058540 Raly protein_coding protein_coding MGP_AJ_T0058541.1 MGP_AJ_G0026691.1 mouse_genomes_project 2 153202840 153282080 + MGP_AJ_P0058541 Raly protein_coding protein_coding MGP_AJ_T0058542.1 MGP_AJ_G0026691.1 mouse_genomes_project 2 153202864 153282097 + MGP_AJ_P0058542 Raly protein_coding protein_coding MGP_AJ_T0058543.1 MGP_AJ_G0026691.1 mouse_genomes_project 2 153203059 153278672 + MGP_AJ_P0058543 Raly protein_coding protein_coding MGP_AJ_T0058544.1 MGP_AJ_G0026691.1 mouse_genomes_project 2 153203061 153263064 + Raly protein_coding processed_transcript MGP_AJ_T0058545.1 MGP_AJ_G0026691.1 mouse_genomes_project 2 153203076 153271961 + Raly protein_coding processed_transcript MGP_AJ_T0058546.1 MGP_AJ_G0026691.1 mouse_genomes_project 2 153203422 153272074 + Raly protein_coding processed_transcript MGP_AJ_T0052794.1 MGP_AJ_G0025362.1 mouse_genomes_project 2 16689565 16692403 + MGP_AJ_P0052794 Otud1 protein_coding protein_coding MGP_AJ_T0054015.1 MGP_AJ_G0025568.1 mouse_genomes_project 2 28934686 28939100 - MGP_AJ_P0054015 Qrfp protein_coding protein_coding MGP_AJ_T0099751.1 MGP_AJ_G0037717.1 mouse_genomes_project 2 22322032 22322127 + Gm25220 snRNA snRNA MGP_AJ_T0102507.1 MGP_AJ_G0040249.1 mouse_genomes_project 2 88010887 88037990 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0057078.1 MGP_AJ_G0026330.1 mouse_genomes_project 2 118384537 118418877 + MGP_AJ_P0057078 Snap23 protein_coding protein_coding MGP_AJ_T0057079.1 MGP_AJ_G0026330.1 mouse_genomes_project 2 118384557 118418877 + MGP_AJ_P0057079 Snap23 protein_coding protein_coding MGP_AJ_T0057080.1 MGP_AJ_G0026330.1 mouse_genomes_project 2 118384563 118418877 + MGP_AJ_P0057080 Snap23 protein_coding protein_coding MGP_AJ_T0057081.1 MGP_AJ_G0026330.1 mouse_genomes_project 2 118384587 118414404 + MGP_AJ_P0057081 Snap23 protein_coding nonsense_mediated_decay MGP_AJ_T0057082.1 MGP_AJ_G0026330.1 mouse_genomes_project 2 118384589 118402356 + Snap23 protein_coding retained_intron MGP_AJ_T0057083.1 MGP_AJ_G0026330.1 mouse_genomes_project 2 118384589 118403648 + MGP_AJ_P0057083 Snap23 protein_coding protein_coding MGP_AJ_T0057084.1 MGP_AJ_G0026330.1 mouse_genomes_project 2 118384604 118414317 + MGP_AJ_P0057084 Snap23 protein_coding protein_coding MGP_AJ_T0057085.1 MGP_AJ_G0026330.1 mouse_genomes_project 2 118403621 118413036 + Snap23 protein_coding retained_intron MGP_AJ_T0057086.1 MGP_AJ_G0026330.1 mouse_genomes_project 2 118408121 118414399 + Snap23 protein_coding processed_transcript MGP_AJ_T0055886.1 MGP_AJ_G0026021.1 mouse_genomes_project 2 86156113 86157025 + MGP_AJ_P0055886 Olfr1186 protein_coding protein_coding MGP_AJ_T0055911.1 MGP_AJ_G0026043.1 mouse_genomes_project 2 86751586 86752522 - MGP_AJ_P0055911 Olfr1220 protein_coding protein_coding MGP_AJ_T0004038.1 MGP_AJ_G0003586.1 mouse_genomes_project 2 91042354 91056338 + Gm13807 antisense antisense MGP_AJ_T0059160.1 MGP_AJ_G0026819.1 mouse_genomes_project 2 162988369 163019411 + MGP_AJ_P0059160 Gm20458 protein_coding nonsense_mediated_decay MGP_AJ_T0059379.1 MGP_AJ_G0026869.1 mouse_genomes_project 2 165393303 165396260 + MGP_AJ_P0059379 protein_coding protein_coding MGP_AJ_T0059381.1 MGP_AJ_G0026869.1 mouse_genomes_project 2 165395503 165396222 + protein_coding processed_transcript MGP_AJ_T0011507.1 MGP_AJ_G0009629.1 mouse_genomes_project 2 102789881 102790175 - Gm27538 misc_RNA misc_RNA MGP_AJ_T0053518.1 MGP_AJ_G0025491.1 mouse_genomes_project 2 24479301 24509112 - MGP_AJ_P0053518 Brd3 protein_coding protein_coding MGP_AJ_T0053519.1 MGP_AJ_G0025491.1 mouse_genomes_project 2 24479301 24509400 - MGP_AJ_P0053519 Brd3 protein_coding protein_coding MGP_AJ_T0053520.1 MGP_AJ_G0025491.1 mouse_genomes_project 2 24479322 24509387 - MGP_AJ_P0053520 Brd3 protein_coding protein_coding MGP_AJ_T0053521.1 MGP_AJ_G0025491.1 mouse_genomes_project 2 24481566 24497830 - MGP_AJ_P0053521 Brd3 protein_coding protein_coding MGP_AJ_T0053522.1 MGP_AJ_G0025491.1 mouse_genomes_project 2 24482980 24543778 - MGP_AJ_P0053522 Brd3 protein_coding protein_coding MGP_AJ_T0053523.1 MGP_AJ_G0025491.1 mouse_genomes_project 2 24482980 24509368 - MGP_AJ_P0053523 Brd3 protein_coding protein_coding MGP_AJ_T0053524.1 MGP_AJ_G0025491.1 mouse_genomes_project 2 24486709 24509367 - Brd3 protein_coding processed_transcript MGP_AJ_T0053525.1 MGP_AJ_G0025491.1 mouse_genomes_project 2 24497244 24509321 - MGP_AJ_P0053525 Brd3 protein_coding protein_coding MGP_AJ_T0053526.1 MGP_AJ_G0025491.1 mouse_genomes_project 2 24497605 24498296 - Brd3 protein_coding processed_transcript MGP_AJ_T0053527.1 MGP_AJ_G0025491.1 mouse_genomes_project 2 24497712 24508895 - Brd3 protein_coding processed_transcript MGP_AJ_T0013861.1 MGP_AJ_G0011956.1 mouse_genomes_project 2 161441555 161442245 + processed_pseudogene processed_pseudogene MGP_AJ_T0053492.1 MGP_AJ_G0025486.1 mouse_genomes_project 2 24102795 24132269 + MGP_AJ_P0053492 Adamtsl2 protein_coding protein_coding MGP_AJ_T0053493.1 MGP_AJ_G0025486.1 mouse_genomes_project 2 24120585 24132263 + Adamtsl2 protein_coding retained_intron MGP_AJ_T0053494.1 MGP_AJ_G0025486.1 mouse_genomes_project 2 24121332 24121948 + Adamtsl2 protein_coding processed_transcript MGP_AJ_T0053495.1 MGP_AJ_G0025486.1 mouse_genomes_project 2 24127073 24130694 + Adamtsl2 protein_coding retained_intron MGP_AJ_T0053496.1 MGP_AJ_G0025486.1 mouse_genomes_project 2 24127950 24132269 + Adamtsl2 protein_coding retained_intron MGP_AJ_T0059966.1 MGP_AJ_G0026997.1 mouse_genomes_project 2 180447168 180451163 - MGP_AJ_P0059966 Samd10 protein_coding protein_coding MGP_AJ_T0059967.1 MGP_AJ_G0026997.1 mouse_genomes_project 2 180447171 180451149 - MGP_AJ_P0059967 Samd10 protein_coding nonsense_mediated_decay MGP_AJ_T0059968.1 MGP_AJ_G0026997.1 mouse_genomes_project 2 180448742 180449557 - Samd10 protein_coding retained_intron MGP_AJ_T0054326.1 MGP_AJ_G0025615.1 mouse_genomes_project 2 31593538 31684525 + MGP_AJ_P0054326 Mapkap1 protein_coding protein_coding MGP_AJ_T0054327.1 MGP_AJ_G0025615.1 mouse_genomes_project 2 31593636 31809694 + MGP_AJ_P0054327 Mapkap1 protein_coding protein_coding MGP_AJ_T0054328.1 MGP_AJ_G0025615.1 mouse_genomes_project 2 31593636 31618745 + MGP_AJ_P0054328 Mapkap1 protein_coding protein_coding MGP_AJ_T0054329.1 MGP_AJ_G0025615.1 mouse_genomes_project 2 31593639 31665251 + Mapkap1 protein_coding processed_transcript MGP_AJ_T0054330.1 MGP_AJ_G0025615.1 mouse_genomes_project 2 31593645 31808298 + MGP_AJ_P0054330 Mapkap1 protein_coding protein_coding MGP_AJ_T0054331.1 MGP_AJ_G0025615.1 mouse_genomes_project 2 31625094 31719605 + Mapkap1 protein_coding processed_transcript MGP_AJ_T0054332.1 MGP_AJ_G0025615.1 mouse_genomes_project 2 31630948 31684682 + MGP_AJ_P0054332 Mapkap1 protein_coding nonsense_mediated_decay MGP_AJ_T0054333.1 MGP_AJ_G0025615.1 mouse_genomes_project 2 31804330 31808653 + Mapkap1 protein_coding processed_transcript MGP_AJ_T0013613.1 MGP_AJ_G0011708.1 mouse_genomes_project 2 76094328 76094826 + processed_pseudogene processed_pseudogene MGP_AJ_T0058357.1 MGP_AJ_G0026641.1 mouse_genomes_project 2 150980786 150981703 + MGP_AJ_P0058357 Mcts2 protein_coding protein_coding MGP_AJ_T0054073.1 MGP_AJ_G0025578.1 mouse_genomes_project 2 29420689 29429939 - MGP_AJ_P0054073 Swi5 protein_coding protein_coding MGP_AJ_T0054074.1 MGP_AJ_G0025578.1 mouse_genomes_project 2 29420689 29424735 - MGP_AJ_P0054074 Swi5 protein_coding protein_coding MGP_AJ_T0054075.1 MGP_AJ_G0025578.1 mouse_genomes_project 2 29420689 29429876 - MGP_AJ_P0054075 Swi5 protein_coding nonsense_mediated_decay MGP_AJ_T0054076.1 MGP_AJ_G0025578.1 mouse_genomes_project 2 29420689 29429806 - MGP_AJ_P0054076 Swi5 protein_coding nonsense_mediated_decay MGP_AJ_T0054077.1 MGP_AJ_G0025578.1 mouse_genomes_project 2 29420689 29429946 - MGP_AJ_P0054077 Swi5 protein_coding protein_coding MGP_AJ_T0054078.1 MGP_AJ_G0025578.1 mouse_genomes_project 2 29420791 29429940 - MGP_AJ_P0054078 Swi5 protein_coding protein_coding MGP_AJ_T0054079.1 MGP_AJ_G0025578.1 mouse_genomes_project 2 29425151 29429902 - Swi5 protein_coding retained_intron MGP_AJ_T0059131.1 MGP_AJ_G0026805.1 mouse_genomes_project 2 162713180 162714577 - MGP_AJ_P0059131 Wfdc12 protein_coding protein_coding MGP_AJ_T0007277.1 MGP_AJ_G0005963.1 mouse_genomes_project 2 93027046 93030256 + Gm13794 lincRNA lincRNA MGP_AJ_T0101012.1 MGP_AJ_G0038978.1 mouse_genomes_project 2 16962676 16962767 + Gm25859 snoRNA snoRNA MGP_AJ_T0056689.1 MGP_AJ_G0026237.1 mouse_genomes_project 2 109699543 109700506 - MGP_AJ_P0056689 Olfr1308 protein_coding protein_coding MGP_AJ_T0059653.1 MGP_AJ_G0026935.1 mouse_genomes_project 2 173189670 173196979 + MGP_AJ_P0059653 Tubb1 protein_coding protein_coding MGP_AJ_T0001033.1 MGP_AJ_G0000964.1 mouse_genomes_project 2 9451690 9454780 - TEC TEC MGP_AJ_T0052727.1 MGP_AJ_G0025348.1 mouse_genomes_project 2 15034046 15034588 - MGP_AJ_P0052727 H2afb1 protein_coding protein_coding MGP_AJ_T0058402.1 MGP_AJ_G0026651.1 mouse_genomes_project 2 151338546 151362750 + MGP_AJ_P0058402 Xkr7 protein_coding protein_coding MGP_AJ_T0056117.1 MGP_AJ_G0026108.1 mouse_genomes_project 2 88867922 88873516 + MGP_AJ_P0056117 Pacsin3 protein_coding protein_coding MGP_AJ_T0056118.1 MGP_AJ_G0026108.1 mouse_genomes_project 2 88868083 88869097 + Pacsin3 protein_coding retained_intron MGP_AJ_T0056119.1 MGP_AJ_G0026108.1 mouse_genomes_project 2 88868112 88872488 + MGP_AJ_P0056119 Pacsin3 protein_coding protein_coding MGP_AJ_T0056120.1 MGP_AJ_G0026108.1 mouse_genomes_project 2 88868130 88876602 + MGP_AJ_P0056120 Pacsin3 protein_coding protein_coding MGP_AJ_T0056121.1 MGP_AJ_G0026108.1 mouse_genomes_project 2 88868781 88873193 + MGP_AJ_P0056121 Pacsin3 protein_coding protein_coding MGP_AJ_T0056122.1 MGP_AJ_G0026108.1 mouse_genomes_project 2 88868781 88876601 + MGP_AJ_P0056122 Pacsin3 protein_coding protein_coding MGP_AJ_T0056123.1 MGP_AJ_G0026108.1 mouse_genomes_project 2 88868781 88876602 + MGP_AJ_P0056123 Pacsin3 protein_coding protein_coding MGP_AJ_T0056124.1 MGP_AJ_G0026108.1 mouse_genomes_project 2 88868806 88873282 + MGP_AJ_P0056124 Pacsin3 protein_coding protein_coding MGP_AJ_T0056125.1 MGP_AJ_G0026108.1 mouse_genomes_project 2 88869297 88876602 + MGP_AJ_P0056125 Pacsin3 protein_coding protein_coding MGP_AJ_T0056126.1 MGP_AJ_G0026108.1 mouse_genomes_project 2 88869303 88873248 + MGP_AJ_P0056126 Pacsin3 protein_coding protein_coding MGP_AJ_T0056127.1 MGP_AJ_G0026108.1 mouse_genomes_project 2 88871152 88872176 + Pacsin3 protein_coding processed_transcript MGP_AJ_T0056128.1 MGP_AJ_G0026108.1 mouse_genomes_project 2 88871775 88873545 + MGP_AJ_P0056128 Pacsin3 protein_coding protein_coding MGP_AJ_T0056129.1 MGP_AJ_G0026108.1 mouse_genomes_project 2 88872751 88873616 + Pacsin3 protein_coding retained_intron MGP_AJ_T0056130.1 MGP_AJ_G0026108.1 mouse_genomes_project 2 88874835 88875456 + Pacsin3 protein_coding retained_intron MGP_AJ_T0056131.1 MGP_AJ_G0026108.1 mouse_genomes_project 2 88875028 88876282 + MGP_AJ_P0056131 Pacsin3 protein_coding protein_coding MGP_AJ_T0059196.1 MGP_AJ_G0026834.1 mouse_genomes_project 2 163235343 163239294 + MGP_AJ_P0059196 Spint4 protein_coding protein_coding MGP_AJ_T0001095.1 MGP_AJ_G0001024.1 mouse_genomes_project 2 115801641 115803263 + TEC TEC MGP_AJ_T0057308.1 MGP_AJ_G0026370.1 mouse_genomes_project 2 120058745 120077625 + MGP_AJ_P0057308 Terb2 protein_coding protein_coding MGP_AJ_T0057309.1 MGP_AJ_G0026370.1 mouse_genomes_project 2 120058947 120076189 + Terb2 protein_coding processed_transcript MGP_AJ_T0007331.1 MGP_AJ_G0006007.1 mouse_genomes_project 2 126426826 126427738 + Gm14010 lincRNA lincRNA MGP_AJ_T0055908.1 MGP_AJ_G0026040.1 mouse_genomes_project 2 86655598 86656537 - MGP_AJ_P0055908 Olfr1215 protein_coding protein_coding MGP_AJ_T0053913.1 MGP_AJ_G0025553.1 mouse_genomes_project 2 27936664 27982870 + MGP_AJ_P0053913 Prrx2 protein_coding protein_coding MGP_AJ_T0053914.1 MGP_AJ_G0025553.1 mouse_genomes_project 2 27946747 27982899 + MGP_AJ_P0053914 Prrx2 protein_coding protein_coding MGP_AJ_T0053915.1 MGP_AJ_G0025553.1 mouse_genomes_project 2 27947132 27980301 + Prrx2 protein_coding retained_intron MGP_AJ_T0053916.1 MGP_AJ_G0025553.1 mouse_genomes_project 2 27980962 27982768 + Prrx2 protein_coding retained_intron MGP_AJ_T0056510.1 MGP_AJ_G0026176.1 mouse_genomes_project 2 101767759 101769743 + MGP_AJ_P0056510 A930018P22Rik protein_coding protein_coding MGP_AJ_T0059166.1 MGP_AJ_G0026821.1 mouse_genomes_project 2 163014756 163019418 + MGP_AJ_P0059166 Dbndd2 protein_coding protein_coding MGP_AJ_T0059167.1 MGP_AJ_G0026821.1 mouse_genomes_project 2 163015105 163019926 + MGP_AJ_P0059167 Dbndd2 protein_coding protein_coding MGP_AJ_T0059168.1 MGP_AJ_G0026821.1 mouse_genomes_project 2 163015105 163019418 + MGP_AJ_P0059168 Dbndd2 protein_coding nonsense_mediated_decay MGP_AJ_T0059169.1 MGP_AJ_G0026821.1 mouse_genomes_project 2 163015131 163018867 + MGP_AJ_P0059169 Dbndd2 protein_coding protein_coding MGP_AJ_T0059170.1 MGP_AJ_G0026821.1 mouse_genomes_project 2 163015527 163021984 + MGP_AJ_P0059170 Dbndd2 protein_coding protein_coding MGP_AJ_T0059171.1 MGP_AJ_G0026821.1 mouse_genomes_project 2 163016471 163019418 + MGP_AJ_P0059171 Dbndd2 protein_coding protein_coding MGP_AJ_T0058040.1 MGP_AJ_G0026544.1 mouse_genomes_project 2 142106296 142147937 + MGP_AJ_P0058040 Banf2 protein_coding protein_coding MGP_AJ_T0058041.1 MGP_AJ_G0026544.1 mouse_genomes_project 2 142106339 142147937 + MGP_AJ_P0058041 Banf2 protein_coding protein_coding MGP_AJ_T0004008.1 MGP_AJ_G0003567.1 mouse_genomes_project 2 70341473 70350502 + Sp3os antisense antisense MGP_AJ_T0004009.1 MGP_AJ_G0003567.1 mouse_genomes_project 2 70341473 70350737 + Sp3os antisense antisense MGP_AJ_T0004010.1 MGP_AJ_G0003567.1 mouse_genomes_project 2 70341565 70350606 + Sp3os antisense antisense MGP_AJ_T0004011.1 MGP_AJ_G0003567.1 mouse_genomes_project 2 70349300 70350667 + Sp3os antisense antisense MGP_AJ_T0054734.1 MGP_AJ_G0025699.1 mouse_genomes_project 2 46946715 47108721 + MGP_AJ_P0054734 Kif5c protein_coding protein_coding MGP_AJ_T0054735.1 MGP_AJ_G0025699.1 mouse_genomes_project 2 47033033 47064194 + MGP_AJ_P0054735 Kif5c protein_coding protein_coding MGP_AJ_T0054736.1 MGP_AJ_G0025699.1 mouse_genomes_project 2 47056509 47069527 + Kif5c protein_coding processed_transcript MGP_AJ_T0054737.1 MGP_AJ_G0025699.1 mouse_genomes_project 2 47066553 47069518 + Kif5c protein_coding processed_transcript MGP_AJ_T0054738.1 MGP_AJ_G0025699.1 mouse_genomes_project 2 47078467 47091330 + Kif5c protein_coding processed_transcript MGP_AJ_T0054739.1 MGP_AJ_G0025699.1 mouse_genomes_project 2 47086132 47092851 + Kif5c protein_coding processed_transcript MGP_AJ_T0013440.1 MGP_AJ_G0011535.1 mouse_genomes_project 2 14826742 14827893 - processed_pseudogene processed_pseudogene MGP_AJ_T0003980.1 MGP_AJ_G0003546.1 mouse_genomes_project 2 57692953 57694008 + Gm13580 antisense antisense MGP_AJ_T0003951.1 MGP_AJ_G0003524.1 mouse_genomes_project 2 29373817 29377418 - Gm13610 antisense antisense MGP_AJ_T0052419.1 MGP_AJ_G0025298.1 mouse_genomes_project 2 2123751 2217478 + MGP_AJ_P0052419 Ccdc3 protein_coding protein_coding MGP_AJ_T0057702.1 MGP_AJ_G0026469.1 mouse_genomes_project 2 128463541 128477989 + Vps16 protein_coding retained_intron MGP_AJ_T0057703.1 MGP_AJ_G0026469.1 mouse_genomes_project 2 128463567 128483805 + MGP_AJ_P0057703 Vps16 protein_coding protein_coding MGP_AJ_T0057704.1 MGP_AJ_G0026469.1 mouse_genomes_project 2 128463567 128479453 + MGP_AJ_P0057704 Vps16 protein_coding protein_coding MGP_AJ_T0057705.1 MGP_AJ_G0026469.1 mouse_genomes_project 2 128463606 128479832 + Vps16 protein_coding processed_transcript MGP_AJ_T0057706.1 MGP_AJ_G0026469.1 mouse_genomes_project 2 128477171 128478603 + Vps16 protein_coding retained_intron MGP_AJ_T0057707.1 MGP_AJ_G0026469.1 mouse_genomes_project 2 128479165 128481241 + Vps16 protein_coding retained_intron MGP_AJ_T0057708.1 MGP_AJ_G0026469.1 mouse_genomes_project 2 128479857 128480843 + Vps16 protein_coding retained_intron MGP_AJ_T0057709.1 MGP_AJ_G0026469.1 mouse_genomes_project 2 128481143 128482935 + Vps16 protein_coding retained_intron MGP_AJ_T0057710.1 MGP_AJ_G0026469.1 mouse_genomes_project 2 128482702 128483270 + Vps16 protein_coding retained_intron MGP_AJ_T0099763.1 MGP_AJ_G0037729.1 mouse_genomes_project 2 52327078 52327219 + Gm25489 snRNA snRNA MGP_AJ_T0004114.1 MGP_AJ_G0003636.1 mouse_genomes_project 2 142133022 142142765 - Banf2os antisense antisense MGP_AJ_T0004115.1 MGP_AJ_G0003636.1 mouse_genomes_project 2 142133449 142142742 - Banf2os antisense antisense MGP_AJ_T0055874.1 MGP_AJ_G0026010.1 mouse_genomes_project 2 85623523 85624504 - MGP_AJ_P0055874 Olfr1164 protein_coding protein_coding MGP_AJ_T0057338.1 MGP_AJ_G0026379.1 mouse_genomes_project 2 120489779 120506376 - MGP_AJ_P0057338 Gatm protein_coding protein_coding MGP_AJ_T0057339.1 MGP_AJ_G0026379.1 mouse_genomes_project 2 120490797 120493819 - Gatm protein_coding processed_transcript MGP_AJ_T0057340.1 MGP_AJ_G0026379.1 mouse_genomes_project 2 120490914 120494097 - Gatm protein_coding retained_intron MGP_AJ_T0010407.1 MGP_AJ_G0008529.1 mouse_genomes_project 2 35862178 35862304 - Gm27634 miRNA miRNA MGP_AJ_T0098939.1 MGP_AJ_G0036917.1 mouse_genomes_project 2 1065409 1068759 + Gm10862 sense_intronic sense_intronic MGP_AJ_T0013821.1 MGP_AJ_G0011916.1 mouse_genomes_project 2 149981693 149982144 - processed_pseudogene processed_pseudogene MGP_AJ_T0007411.1 MGP_AJ_G0006073.1 mouse_genomes_project 2 166784676 166786587 - E130018N17Rik lincRNA lincRNA MGP_AJ_T0017855.1 MGP_AJ_G0015441.1 mouse_genomes_project 2 123072137 123081782 - Gm14004 processed_transcript processed_transcript MGP_AJ_T0053300.1 MGP_AJ_G0025454.1 mouse_genomes_project 2 23069071 23106324 - MGP_AJ_P0053300 Nacc2 protein_coding protein_coding MGP_AJ_T0053301.1 MGP_AJ_G0025454.1 mouse_genomes_project 2 23069071 23136816 - MGP_AJ_P0053301 Nacc2 protein_coding protein_coding MGP_AJ_T0053302.1 MGP_AJ_G0025454.1 mouse_genomes_project 2 23074586 23075994 - Nacc2 protein_coding processed_transcript MGP_AJ_T0053303.1 MGP_AJ_G0025454.1 mouse_genomes_project 2 23077873 23105966 - Nacc2 protein_coding processed_transcript MGP_AJ_T0053304.1 MGP_AJ_G0025454.1 mouse_genomes_project 2 23077995 23104521 - Nacc2 protein_coding processed_transcript MGP_AJ_T0053305.1 MGP_AJ_G0025454.1 mouse_genomes_project 2 23103952 23137218 - Nacc2 protein_coding processed_transcript MGP_AJ_T0053306.1 MGP_AJ_G0025454.1 mouse_genomes_project 2 23104231 23136781 - MGP_AJ_P0053306 Nacc2 protein_coding protein_coding MGP_AJ_T0053307.1 MGP_AJ_G0025454.1 mouse_genomes_project 2 23104473 23136786 - Nacc2 protein_coding processed_transcript MGP_AJ_T0057688.1 MGP_AJ_G0026464.1 mouse_genomes_project 2 128429997 128436790 - MGP_AJ_P0057688 Cpxm1 protein_coding protein_coding MGP_AJ_T0057689.1 MGP_AJ_G0026464.1 mouse_genomes_project 2 128429998 128432487 - Cpxm1 protein_coding retained_intron MGP_AJ_T0013700.1 MGP_AJ_G0011795.1 mouse_genomes_project 2 102543337 102543681 + processed_pseudogene processed_pseudogene MGP_AJ_T0101031.1 MGP_AJ_G0038997.1 mouse_genomes_project 2 40055028 40055160 + Gm24350 snoRNA snoRNA MGP_AJ_T0013888.1 MGP_AJ_G0011983.1 mouse_genomes_project 2 180142953 180143592 + processed_pseudogene processed_pseudogene MGP_AJ_T0054635.1 MGP_AJ_G0025689.1 mouse_genomes_project 2 36448629 36480470 - MGP_AJ_P0054635 Ppp6c protein_coding protein_coding MGP_AJ_T0054636.1 MGP_AJ_G0025689.1 mouse_genomes_project 2 36451003 36480511 - MGP_AJ_P0054636 Ppp6c protein_coding nonsense_mediated_decay MGP_AJ_T0054637.1 MGP_AJ_G0025689.1 mouse_genomes_project 2 36451046 36480549 - MGP_AJ_P0054637 Ppp6c protein_coding protein_coding MGP_AJ_T0054638.1 MGP_AJ_G0025689.1 mouse_genomes_project 2 36451766 36455260 - Ppp6c protein_coding processed_transcript MGP_AJ_T0013649.1 MGP_AJ_G0011744.1 mouse_genomes_project 2 84887789 84888947 + processed_pseudogene processed_pseudogene MGP_AJ_T0013504.1 MGP_AJ_G0011599.1 mouse_genomes_project 2 36408290 36409016 + processed_pseudogene processed_pseudogene MGP_AJ_T0052843.1 MGP_AJ_G0025368.1 mouse_genomes_project 2 19236660 19506399 + MGP_AJ_P0052843 Myo3a protein_coding protein_coding MGP_AJ_T0052844.1 MGP_AJ_G0025368.1 mouse_genomes_project 2 19236662 19304692 + Myo3a protein_coding processed_transcript MGP_AJ_T0052845.1 MGP_AJ_G0025368.1 mouse_genomes_project 2 19236662 19294822 + Myo3a protein_coding processed_transcript MGP_AJ_T0052846.1 MGP_AJ_G0025368.1 mouse_genomes_project 2 19250533 19402236 + MGP_AJ_P0052846 Myo3a protein_coding protein_coding MGP_AJ_T0052847.1 MGP_AJ_G0025368.1 mouse_genomes_project 2 19440421 19506394 + MGP_AJ_P0052847 Myo3a protein_coding protein_coding MGP_AJ_T0052848.1 MGP_AJ_G0025368.1 mouse_genomes_project 2 19463706 19493609 + Myo3a protein_coding processed_transcript MGP_AJ_T0101984.1 MGP_AJ_G0039809.1 mouse_genomes_project 2 34469117 34473008 + transcribed_unprocessed_pseudogene processed_transcript MGP_AJ_T0101985.1 MGP_AJ_G0039809.1 mouse_genomes_project 2 34472576 34473521 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_AJ_T0053369.1 MGP_AJ_G0025465.1 mouse_genomes_project 2 23413828 23416787 - MGP_AJ_P0053369 Inpp5e protein_coding protein_coding MGP_AJ_T0053370.1 MGP_AJ_G0025465.1 mouse_genomes_project 2 23414366 23426400 - Inpp5e protein_coding processed_transcript MGP_AJ_T0053371.1 MGP_AJ_G0025465.1 mouse_genomes_project 2 23414609 23426419 - Inpp5e protein_coding processed_transcript MGP_AJ_T0053372.1 MGP_AJ_G0025465.1 mouse_genomes_project 2 23415151 23425803 - MGP_AJ_P0053372 Inpp5e protein_coding protein_coding MGP_AJ_T0053373.1 MGP_AJ_G0025465.1 mouse_genomes_project 2 23416575 23417792 - Inpp5e protein_coding processed_transcript MGP_AJ_T0053374.1 MGP_AJ_G0025465.1 mouse_genomes_project 2 23416728 23419522 - MGP_AJ_P0053374 Inpp5e protein_coding protein_coding MGP_AJ_T0013818.1 MGP_AJ_G0011913.1 mouse_genomes_project 2 149134409 149134766 + processed_pseudogene processed_pseudogene MGP_AJ_T0010414.1 MGP_AJ_G0008536.1 mouse_genomes_project 2 59074652 59074736 - Gm22403 miRNA miRNA MGP_AJ_T0053548.1 MGP_AJ_G0025497.1 mouse_genomes_project 2 25501665 25505355 + Ppp1r26 protein_coding processed_transcript MGP_AJ_T0053549.1 MGP_AJ_G0025497.1 mouse_genomes_project 2 25501731 25505679 + Ppp1r26 protein_coding processed_transcript MGP_AJ_T0053550.1 MGP_AJ_G0025497.1 mouse_genomes_project 2 25502803 25505515 + Ppp1r26 protein_coding processed_transcript MGP_AJ_T0053551.1 MGP_AJ_G0025497.1 mouse_genomes_project 2 25502803 25510343 + MGP_AJ_P0053551 Ppp1r26 protein_coding protein_coding MGP_AJ_T0053552.1 MGP_AJ_G0025497.1 mouse_genomes_project 2 25502803 25510340 + MGP_AJ_P0053552 Ppp1r26 protein_coding protein_coding MGP_AJ_T0007170.1 MGP_AJ_G0005877.1 mouse_genomes_project 2 25140084 25141567 - Gm13371 lincRNA lincRNA MGP_AJ_T0059106.1 MGP_AJ_G0026795.1 mouse_genomes_project 2 162269135 162292785 - MGP_AJ_P0059106 Ada protein_coding protein_coding MGP_AJ_T0059107.1 MGP_AJ_G0026795.1 mouse_genomes_project 2 162272564 162273416 - Ada protein_coding processed_transcript MGP_AJ_T0013437.1 MGP_AJ_G0011532.1 mouse_genomes_project 2 13033818 13034431 + processed_pseudogene processed_pseudogene MGP_AJ_T0058337.1 MGP_AJ_G0026628.1 mouse_genomes_project 2 150763181 150766052 + MGP_AJ_P0058337 Defb20 protein_coding protein_coding MGP_AJ_T0017785.1 MGP_AJ_G0015406.1 mouse_genomes_project 2 73170820 73175912 + Gm13657 processed_transcript processed_transcript MGP_AJ_T0004075.1 MGP_AJ_G0003611.1 mouse_genomes_project 2 123228572 123231161 + A530010F05Rik antisense antisense MGP_AJ_T0058436.1 MGP_AJ_G0026659.1 mouse_genomes_project 2 151721889 151845831 - MGP_AJ_P0058436 Nol4l protein_coding protein_coding MGP_AJ_T0058437.1 MGP_AJ_G0026659.1 mouse_genomes_project 2 151732271 151759588 - Nol4l protein_coding processed_transcript MGP_AJ_T0058438.1 MGP_AJ_G0026659.1 mouse_genomes_project 2 151768818 151799943 - Nol4l protein_coding processed_transcript MGP_AJ_T0058439.1 MGP_AJ_G0026659.1 mouse_genomes_project 2 151774740 151808553 - Nol4l protein_coding processed_transcript MGP_AJ_T0058440.1 MGP_AJ_G0026659.1 mouse_genomes_project 2 151778595 151796056 - Nol4l protein_coding processed_transcript MGP_AJ_T0098660.1 MGP_AJ_G0036644.1 mouse_genomes_project 2 143437576 143437670 + Gm22731 rRNA rRNA MGP_AJ_T0007269.1 MGP_AJ_G0005959.1 mouse_genomes_project 2 90729038 90741276 - Gm13802 lincRNA lincRNA MGP_AJ_T0059559.1 MGP_AJ_G0026910.1 mouse_genomes_project 2 171064646 171070025 + MGP_AJ_P0059559 Cstf1 protein_coding protein_coding MGP_AJ_T0059560.1 MGP_AJ_G0026910.1 mouse_genomes_project 2 171064699 171077209 + MGP_AJ_P0059560 Cstf1 protein_coding protein_coding MGP_AJ_T0007375.1 MGP_AJ_G0006043.1 mouse_genomes_project 2 155319899 155326671 - Gm14230 lincRNA lincRNA MGP_AJ_T0007376.1 MGP_AJ_G0006043.1 mouse_genomes_project 2 155324672 155326743 - Gm14230 lincRNA lincRNA MGP_AJ_T0007377.1 MGP_AJ_G0006043.1 mouse_genomes_project 2 155325322 155326651 - Gm14230 lincRNA lincRNA MGP_AJ_T0055671.1 MGP_AJ_G0025877.1 mouse_genomes_project 2 82052580 82054136 - MGP_AJ_P0055671 2700094K13Rik protein_coding protein_coding MGP_AJ_T0055673.1 MGP_AJ_G0025877.1 mouse_genomes_project 2 82052586 82054074 - MGP_AJ_P0055673 2700094K13Rik protein_coding protein_coding MGP_AJ_T0055674.1 MGP_AJ_G0025877.1 mouse_genomes_project 2 82052672 82054042 - MGP_AJ_P0055674 2700094K13Rik protein_coding protein_coding MGP_AJ_T0055675.1 MGP_AJ_G0025877.1 mouse_genomes_project 2 82053060 82054063 - MGP_AJ_P0055675 2700094K13Rik protein_coding protein_coding MGP_AJ_T0055676.1 MGP_AJ_G0025877.1 mouse_genomes_project 2 82053315 82054042 - 2700094K13Rik protein_coding retained_intron MGP_AJ_T0055677.1 MGP_AJ_G0025877.1 mouse_genomes_project 2 82053382 82054020 - MGP_AJ_P0055677 2700094K13Rik protein_coding protein_coding MGP_AJ_T0001019.1 MGP_AJ_G0000950.1 mouse_genomes_project 2 3471796 3476262 + TEC TEC MGP_AJ_T0056704.1 MGP_AJ_G0026249.1 mouse_genomes_project 2 110010963 110148640 + MGP_AJ_P0056704 Gm21985 protein_coding nonsense_mediated_decay MGP_AJ_T0010487.1 MGP_AJ_G0008609.1 mouse_genomes_project 2 173002433 173002515 - Mir298 miRNA miRNA MGP_AJ_T0054020.1 MGP_AJ_G0025571.1 mouse_genomes_project 2 29086332 29109618 + MGP_AJ_P0054020 Aif1l protein_coding protein_coding MGP_AJ_T0054021.1 MGP_AJ_G0025571.1 mouse_genomes_project 2 29086467 29105928 + MGP_AJ_P0054021 Aif1l protein_coding protein_coding MGP_AJ_T0054022.1 MGP_AJ_G0025571.1 mouse_genomes_project 2 29086527 29107408 + MGP_AJ_P0054022 Aif1l protein_coding protein_coding MGP_AJ_T0054023.1 MGP_AJ_G0025571.1 mouse_genomes_project 2 29086656 29105931 + Aif1l protein_coding retained_intron MGP_AJ_T0054024.1 MGP_AJ_G0025571.1 mouse_genomes_project 2 29086710 29107514 + Aif1l protein_coding retained_intron MGP_AJ_T0054025.1 MGP_AJ_G0025571.1 mouse_genomes_project 2 29096559 29107200 + Aif1l protein_coding processed_transcript MGP_AJ_T0054026.1 MGP_AJ_G0025571.1 mouse_genomes_project 2 29097541 29105927 + Aif1l protein_coding processed_transcript MGP_AJ_T0054027.1 MGP_AJ_G0025571.1 mouse_genomes_project 2 29098131 29107124 + Aif1l protein_coding retained_intron MGP_AJ_T0054028.1 MGP_AJ_G0025571.1 mouse_genomes_project 2 29099477 29107171 + Aif1l protein_coding processed_transcript MGP_AJ_T0054029.1 MGP_AJ_G0025571.1 mouse_genomes_project 2 29105500 29107331 + Aif1l protein_coding retained_intron MGP_AJ_T0013584.1 MGP_AJ_G0011679.1 mouse_genomes_project 2 66103386 66103776 + processed_pseudogene processed_pseudogene MGP_AJ_T0053716.1 MGP_AJ_G0025526.1 mouse_genomes_project 2 27009377 27034717 + MGP_AJ_P0053716 Gle1 protein_coding protein_coding MGP_AJ_T0053717.1 MGP_AJ_G0025526.1 mouse_genomes_project 2 27009379 27012697 + Gle1 protein_coding retained_intron MGP_AJ_T0053718.1 MGP_AJ_G0025526.1 mouse_genomes_project 2 27009474 27013237 + Gle1 protein_coding retained_intron MGP_AJ_T0053719.1 MGP_AJ_G0025526.1 mouse_genomes_project 2 27016716 27018142 + Gle1 protein_coding retained_intron MGP_AJ_T0053720.1 MGP_AJ_G0025526.1 mouse_genomes_project 2 27017079 27019119 + Gle1 protein_coding retained_intron MGP_AJ_T0053721.1 MGP_AJ_G0025526.1 mouse_genomes_project 2 27023371 27024986 + Gle1 protein_coding retained_intron MGP_AJ_T0053722.1 MGP_AJ_G0025526.1 mouse_genomes_project 2 27029837 27032563 + Gle1 protein_coding retained_intron MGP_AJ_T0054864.1 MGP_AJ_G0025727.1 mouse_genomes_project 2 55883159 55951641 + Upp2 protein_coding processed_transcript MGP_AJ_T0054865.1 MGP_AJ_G0025727.1 mouse_genomes_project 2 55883179 55900145 + Upp2 protein_coding processed_transcript MGP_AJ_T0054866.1 MGP_AJ_G0025727.1 mouse_genomes_project 2 55883248 56094684 + MGP_AJ_P0054866 Upp2 protein_coding protein_coding MGP_AJ_T0054867.1 MGP_AJ_G0025727.1 mouse_genomes_project 2 56055923 56092956 + MGP_AJ_P0054867 Upp2 protein_coding protein_coding MGP_AJ_T0054868.1 MGP_AJ_G0025727.1 mouse_genomes_project 2 56056161 56092382 + MGP_AJ_P0054868 Upp2 protein_coding protein_coding MGP_AJ_T0054869.1 MGP_AJ_G0025727.1 mouse_genomes_project 2 56066878 56092016 + Upp2 protein_coding processed_transcript MGP_AJ_T0057847.1 MGP_AJ_G0026497.1 mouse_genomes_project 2 129904972 129911046 - MGP_AJ_P0057847 Erv3 protein_coding protein_coding MGP_AJ_T0013867.1 MGP_AJ_G0011962.1 mouse_genomes_project 2 164527759 164528321 + processed_pseudogene processed_pseudogene MGP_AJ_T0007307.1 MGP_AJ_G0005988.1 mouse_genomes_project 2 113837583 113838799 - 2700033N17Rik lincRNA lincRNA MGP_AJ_T0013731.1 MGP_AJ_G0011826.1 mouse_genomes_project 2 116252894 116253753 - processed_pseudogene processed_pseudogene MGP_AJ_T0059731.1 MGP_AJ_G0026955.1 mouse_genomes_project 2 179012686 179016694 - Lama5 protein_coding processed_transcript MGP_AJ_T0059732.1 MGP_AJ_G0026955.1 mouse_genomes_project 2 179012686 179062084 - MGP_AJ_P0059732 Lama5 protein_coding protein_coding MGP_AJ_T0059733.1 MGP_AJ_G0026955.1 mouse_genomes_project 2 179012767 179013901 - Lama5 protein_coding processed_transcript MGP_AJ_T0059734.1 MGP_AJ_G0026955.1 mouse_genomes_project 2 179013481 179014717 - Lama5 protein_coding processed_transcript MGP_AJ_T0013755.1 MGP_AJ_G0011850.1 mouse_genomes_project 2 128136190 128137510 + processed_pseudogene processed_pseudogene MGP_AJ_T0001032.1 MGP_AJ_G0000963.1 mouse_genomes_project 2 9436367 9437769 - TEC TEC MGP_AJ_T0013645.1 MGP_AJ_G0011740.1 mouse_genomes_project 2 84744383 84744790 + processed_pseudogene processed_pseudogene MGP_AJ_T0055792.1 MGP_AJ_G0025941.1 mouse_genomes_project 2 83848846 83851109 - MGP_AJ_P0055792 Olfr1065 protein_coding protein_coding MGP_AJ_T0007245.1 MGP_AJ_G0005937.1 mouse_genomes_project 2 72135409 72136052 + Gm14426 lincRNA lincRNA MGP_AJ_T0013856.1 MGP_AJ_G0011951.1 mouse_genomes_project 2 159798546 159799426 - processed_pseudogene processed_pseudogene MGP_AJ_T0013407.1 MGP_AJ_G0011502.1 mouse_genomes_project 2 641008 642077 + processed_pseudogene processed_pseudogene MGP_AJ_T0099771.1 MGP_AJ_G0037737.1 mouse_genomes_project 2 78444014 78444121 - Gm23452 snRNA snRNA MGP_AJ_T0055869.1 MGP_AJ_G0026006.1 mouse_genomes_project 2 85558536 85559502 + MGP_AJ_P0055869 Olfr1161 protein_coding protein_coding MGP_AJ_T0013608.1 MGP_AJ_G0011703.1 mouse_genomes_project 2 74699402 74712832 + processed_pseudogene processed_pseudogene MGP_AJ_T0054704.1 MGP_AJ_G0025696.1 mouse_genomes_project 2 46225629 46273223 - MGP_AJ_P0054704 Orc4 protein_coding protein_coding MGP_AJ_T0054705.1 MGP_AJ_G0025696.1 mouse_genomes_project 2 46227685 46233642 - Orc4 protein_coding processed_transcript MGP_AJ_T0054706.1 MGP_AJ_G0025696.1 mouse_genomes_project 2 46228121 46273178 - Orc4 protein_coding processed_transcript MGP_AJ_T0054707.1 MGP_AJ_G0025696.1 mouse_genomes_project 2 46228184 46234297 - Orc4 protein_coding processed_transcript MGP_AJ_T0054708.1 MGP_AJ_G0025696.1 mouse_genomes_project 2 46228219 46236204 - Orc4 protein_coding processed_transcript MGP_AJ_T0054709.1 MGP_AJ_G0025696.1 mouse_genomes_project 2 46235032 46273181 - Orc4 protein_coding processed_transcript MGP_AJ_T0054710.1 MGP_AJ_G0025696.1 mouse_genomes_project 2 46240833 46273986 - MGP_AJ_P0054710 Orc4 protein_coding protein_coding MGP_AJ_T0054711.1 MGP_AJ_G0025696.1 mouse_genomes_project 2 46253355 46264201 - Orc4 protein_coding processed_transcript MGP_AJ_T0054712.1 MGP_AJ_G0025696.1 mouse_genomes_project 2 46255687 46273181 - MGP_AJ_P0054712 Orc4 protein_coding protein_coding MGP_AJ_T0054713.1 MGP_AJ_G0025696.1 mouse_genomes_project 2 46256882 46257932 - Orc4 protein_coding processed_transcript MGP_AJ_T0054714.1 MGP_AJ_G0025696.1 mouse_genomes_project 2 46260312 46273179 - Orc4 protein_coding processed_transcript MGP_AJ_T0054715.1 MGP_AJ_G0025696.1 mouse_genomes_project 2 46260608 46273188 - MGP_AJ_P0054715 Orc4 protein_coding protein_coding MGP_AJ_T0054716.1 MGP_AJ_G0025696.1 mouse_genomes_project 2 46260679 46274224 - MGP_AJ_P0054716 Orc4 protein_coding protein_coding MGP_AJ_T0055208.1 MGP_AJ_G0025787.1 mouse_genomes_project 2 67345599 67733582 + MGP_AJ_P0055208 Myo3b protein_coding protein_coding MGP_AJ_T0055209.1 MGP_AJ_G0025787.1 mouse_genomes_project 2 67386526 67733585 + MGP_AJ_P0055209 Myo3b protein_coding protein_coding MGP_AJ_T0055210.1 MGP_AJ_G0025787.1 mouse_genomes_project 2 67404609 67491567 + MGP_AJ_P0055210 Myo3b protein_coding protein_coding MGP_AJ_T0052502.1 MGP_AJ_G0025311.1 mouse_genomes_project 2 6894232 6896902 + MGP_AJ_P0052502 4930412O13Rik protein_coding protein_coding MGP_AJ_T0052503.1 MGP_AJ_G0025311.1 mouse_genomes_project 2 6895616 6896316 + MGP_AJ_P0052503 4930412O13Rik protein_coding protein_coding MGP_AJ_T0058290.1 MGP_AJ_G0026611.1 mouse_genomes_project 2 149998027 150023185 - MGP_AJ_P0058290 Psmf1 protein_coding protein_coding MGP_AJ_T0058291.1 MGP_AJ_G0026611.1 mouse_genomes_project 2 149998277 150003211 - Psmf1 protein_coding retained_intron MGP_AJ_T0058292.1 MGP_AJ_G0026611.1 mouse_genomes_project 2 149998277 150023168 - MGP_AJ_P0058292 Psmf1 protein_coding nonsense_mediated_decay MGP_AJ_T0058293.1 MGP_AJ_G0026611.1 mouse_genomes_project 2 150000480 150026061 - MGP_AJ_P0058293 Psmf1 protein_coding protein_coding MGP_AJ_T0058294.1 MGP_AJ_G0026611.1 mouse_genomes_project 2 150001700 150012145 - Psmf1 protein_coding retained_intron MGP_AJ_T0058295.1 MGP_AJ_G0026611.1 mouse_genomes_project 2 150009661 150023168 - Psmf1 protein_coding retained_intron MGP_AJ_T0053498.1 MGP_AJ_G0025488.1 mouse_genomes_project 2 24190034 24209107 + MGP_AJ_P0053498 Dbh protein_coding protein_coding MGP_AJ_T0053499.1 MGP_AJ_G0025488.1 mouse_genomes_project 2 24202999 24203279 + Dbh protein_coding processed_transcript MGP_AJ_T0057562.1 MGP_AJ_G0026432.1 mouse_genomes_project 2 125780344 125781447 - MGP_AJ_P0057562 1500011K16Rik protein_coding protein_coding MGP_AJ_T0013559.1 MGP_AJ_G0011654.1 mouse_genomes_project 2 56195033 56195362 + processed_pseudogene processed_pseudogene MGP_AJ_T0013589.1 MGP_AJ_G0011684.1 mouse_genomes_project 2 67923967 67924216 - processed_pseudogene processed_pseudogene MGP_AJ_T0057558.1 MGP_AJ_G0026431.1 mouse_genomes_project 2 125728581 125777748 - MGP_AJ_P0057558 Nphp1 protein_coding protein_coding MGP_AJ_T0057559.1 MGP_AJ_G0026431.1 mouse_genomes_project 2 125728583 125732388 - Nphp1 protein_coding processed_transcript MGP_AJ_T0057560.1 MGP_AJ_G0026431.1 mouse_genomes_project 2 125728585 125777791 - MGP_AJ_P0057560 Nphp1 protein_coding protein_coding MGP_AJ_T0057561.1 MGP_AJ_G0026431.1 mouse_genomes_project 2 125733461 125741827 - Nphp1 protein_coding retained_intron MGP_AJ_T0059552.1 MGP_AJ_G0026905.1 mouse_genomes_project 2 169417388 169570131 + MGP_AJ_P0059552 Dok5 protein_coding protein_coding MGP_AJ_T0056406.1 MGP_AJ_G0026158.1 mouse_genomes_project 2 100183294 100271120 + MGP_AJ_P0056406 Pamr1 protein_coding protein_coding MGP_AJ_T0056407.1 MGP_AJ_G0026158.1 mouse_genomes_project 2 100183423 100263726 + Pamr1 protein_coding retained_intron MGP_AJ_T0056408.1 MGP_AJ_G0026158.1 mouse_genomes_project 2 100264103 100268795 + Pamr1 protein_coding retained_intron MGP_AJ_T0052381.1 MGP_AJ_G0025291.1 mouse_genomes_project 2 1598501 1630040 - MGP_AJ_P0052381 Prpf18 protein_coding unknown_likely_coding MGP_AJ_T0052382.1 MGP_AJ_G0025291.1 mouse_genomes_project 2 1598501 1630145 - MGP_AJ_P0052382 Prpf18 protein_coding protein_coding MGP_AJ_T0052383.1 MGP_AJ_G0025291.1 mouse_genomes_project 2 1600380 1630165 - Prpf18 protein_coding processed_transcript MGP_AJ_T0052384.1 MGP_AJ_G0025291.1 mouse_genomes_project 2 1600471 1630172 - MGP_AJ_P0052384 Prpf18 protein_coding protein_coding MGP_AJ_T0052385.1 MGP_AJ_G0025291.1 mouse_genomes_project 2 1615346 1630140 - MGP_AJ_P0052385 Prpf18 protein_coding protein_coding MGP_AJ_T0052386.1 MGP_AJ_G0025291.1 mouse_genomes_project 2 1615370 1630146 - Prpf18 protein_coding processed_transcript MGP_AJ_T0052387.1 MGP_AJ_G0025291.1 mouse_genomes_project 2 1620574 1630162 - Prpf18 protein_coding processed_transcript MGP_AJ_T0055892.1 MGP_AJ_G0026026.1 mouse_genomes_project 2 86335481 86336408 - MGP_AJ_P0055892 Olfr1195 protein_coding protein_coding MGP_AJ_T0053834.1 MGP_AJ_G0025544.1 mouse_genomes_project 2 27450321 27471440 + MGP_AJ_P0053834 Fam73b protein_coding protein_coding MGP_AJ_T0053835.1 MGP_AJ_G0025544.1 mouse_genomes_project 2 27450333 27454786 + Fam73b protein_coding processed_transcript MGP_AJ_T0053836.1 MGP_AJ_G0025544.1 mouse_genomes_project 2 27450342 27465013 + MGP_AJ_P0053836 Fam73b protein_coding protein_coding MGP_AJ_T0053837.1 MGP_AJ_G0025544.1 mouse_genomes_project 2 27450354 27455393 + Fam73b protein_coding retained_intron MGP_AJ_T0053838.1 MGP_AJ_G0025544.1 mouse_genomes_project 2 27450381 27456494 + MGP_AJ_P0053838 Fam73b protein_coding protein_coding MGP_AJ_T0053839.1 MGP_AJ_G0025544.1 mouse_genomes_project 2 27450384 27471438 + MGP_AJ_P0053839 Fam73b protein_coding protein_coding MGP_AJ_T0053840.1 MGP_AJ_G0025544.1 mouse_genomes_project 2 27453783 27455394 + Fam73b protein_coding retained_intron MGP_AJ_T0053841.1 MGP_AJ_G0025544.1 mouse_genomes_project 2 27454503 27457291 + MGP_AJ_P0053841 Fam73b protein_coding protein_coding MGP_AJ_T0053842.1 MGP_AJ_G0025544.1 mouse_genomes_project 2 27457370 27462578 + Fam73b protein_coding retained_intron MGP_AJ_T0053843.1 MGP_AJ_G0025544.1 mouse_genomes_project 2 27464153 27467926 + Fam73b protein_coding retained_intron MGP_AJ_T0053844.1 MGP_AJ_G0025544.1 mouse_genomes_project 2 27467631 27470019 + MGP_AJ_P0053844 Fam73b protein_coding protein_coding MGP_AJ_T0053845.1 MGP_AJ_G0025544.1 mouse_genomes_project 2 27467862 27470125 + MGP_AJ_P0053845 Fam73b protein_coding protein_coding MGP_AJ_T0059480.1 MGP_AJ_G0026891.1 mouse_genomes_project 2 166842319 166863264 - MGP_AJ_P0059480 Dpm1 protein_coding protein_coding MGP_AJ_T0059481.1 MGP_AJ_G0026891.1 mouse_genomes_project 2 166843552 166851059 - Dpm1 protein_coding retained_intron MGP_AJ_T0059482.1 MGP_AJ_G0026891.1 mouse_genomes_project 2 166843552 166863476 - MGP_AJ_P0059482 Dpm1 protein_coding protein_coding MGP_AJ_T0059483.1 MGP_AJ_G0026891.1 mouse_genomes_project 2 166843553 166849324 - Dpm1 protein_coding retained_intron MGP_AJ_T0059484.1 MGP_AJ_G0026891.1 mouse_genomes_project 2 166843787 166846533 - Dpm1 protein_coding retained_intron MGP_AJ_T0059485.1 MGP_AJ_G0026891.1 mouse_genomes_project 2 166843813 166863213 - MGP_AJ_P0059485 Dpm1 protein_coding nonsense_mediated_decay MGP_AJ_T0059486.1 MGP_AJ_G0026891.1 mouse_genomes_project 2 166843859 166856193 - Dpm1 protein_coding retained_intron MGP_AJ_T0059487.1 MGP_AJ_G0026891.1 mouse_genomes_project 2 166844655 166862961 - Dpm1 protein_coding processed_transcript MGP_AJ_T0059488.1 MGP_AJ_G0026891.1 mouse_genomes_project 2 166850971 166863115 - Dpm1 protein_coding retained_intron MGP_AJ_T0059489.1 MGP_AJ_G0026891.1 mouse_genomes_project 2 166852832 166863247 - Dpm1 protein_coding retained_intron MGP_AJ_T0007433.1 MGP_AJ_G0006092.1 mouse_genomes_project 2 170981008 170983396 + Gm14275 lincRNA lincRNA MGP_AJ_T0101071.1 MGP_AJ_G0039037.1 mouse_genomes_project 2 140836751 140836867 + Gm22310 snoRNA snoRNA MGP_AJ_T0057691.1 MGP_AJ_G0026466.1 mouse_genomes_project 2 128444499 128445311 + MGP_AJ_P0057691 1700020A23Rik protein_coding protein_coding MGP_AJ_T0057692.1 MGP_AJ_G0026466.1 mouse_genomes_project 2 128444505 128445259 + MGP_AJ_P0057692 1700020A23Rik protein_coding protein_coding MGP_AJ_T0057693.1 MGP_AJ_G0026466.1 mouse_genomes_project 2 128444526 128445315 + MGP_AJ_P0057693 1700020A23Rik protein_coding protein_coding MGP_AJ_T0055807.1 MGP_AJ_G0025955.1 mouse_genomes_project 2 84265620 84266613 + MGP_AJ_P0055807 Olfr1094 protein_coding protein_coding MGP_AJ_T0013754.1 MGP_AJ_G0011849.1 mouse_genomes_project 2 127758406 127758915 + processed_pseudogene processed_pseudogene MGP_AJ_T0013668.1 MGP_AJ_G0011763.1 mouse_genomes_project 2 91440282 91440793 + processed_pseudogene processed_pseudogene MGP_AJ_T0057631.1 MGP_AJ_G0026452.1 mouse_genomes_project 2 127373483 127380053 - MGP_AJ_P0057631 Il1b protein_coding protein_coding MGP_AJ_T0057632.1 MGP_AJ_G0026452.1 mouse_genomes_project 2 127374035 127376265 - Il1b protein_coding processed_transcript MGP_AJ_T0057633.1 MGP_AJ_G0026452.1 mouse_genomes_project 2 127378642 127380053 - Il1b protein_coding retained_intron MGP_AJ_T0058228.1 MGP_AJ_G0026599.1 mouse_genomes_project 2 149033115 149043193 - Abhd12 protein_coding processed_transcript MGP_AJ_T0058229.1 MGP_AJ_G0026599.1 mouse_genomes_project 2 149033115 149104979 - MGP_AJ_P0058229 Abhd12 protein_coding protein_coding MGP_AJ_T0058230.1 MGP_AJ_G0026599.1 mouse_genomes_project 2 149033139 149104969 - MGP_AJ_P0058230 Abhd12 protein_coding nonsense_mediated_decay MGP_AJ_T0058231.1 MGP_AJ_G0026599.1 mouse_genomes_project 2 149033738 149040345 - MGP_AJ_P0058231 Abhd12 protein_coding nonsense_mediated_decay MGP_AJ_T0058232.1 MGP_AJ_G0026599.1 mouse_genomes_project 2 149037981 149104900 - Abhd12 protein_coding processed_transcript MGP_AJ_T0058233.1 MGP_AJ_G0026599.1 mouse_genomes_project 2 149043655 149052113 - Abhd12 protein_coding retained_intron MGP_AJ_T0058234.1 MGP_AJ_G0026599.1 mouse_genomes_project 2 149046952 149104885 - MGP_AJ_P0058234 Abhd12 protein_coding nonsense_mediated_decay MGP_AJ_T0010396.1 MGP_AJ_G0008518.1 mouse_genomes_project 2 29313836 29313915 + Gm27805 miRNA miRNA MGP_AJ_T0059014.1 MGP_AJ_G0026774.1 mouse_genomes_project 2 159408331 159433602 + MGP_AJ_P0059014 Lpin3 protein_coding protein_coding MGP_AJ_T0059015.1 MGP_AJ_G0026774.1 mouse_genomes_project 2 159415743 159433607 + MGP_AJ_P0059015 Lpin3 protein_coding protein_coding MGP_AJ_T0059016.1 MGP_AJ_G0026774.1 mouse_genomes_project 2 159415743 159433607 + MGP_AJ_P0059016 Lpin3 protein_coding protein_coding MGP_AJ_T0059017.1 MGP_AJ_G0026774.1 mouse_genomes_project 2 159415806 159433397 + MGP_AJ_P0059017 Lpin3 protein_coding protein_coding MGP_AJ_T0059018.1 MGP_AJ_G0026774.1 mouse_genomes_project 2 159429153 159431342 + Lpin3 protein_coding processed_transcript MGP_AJ_T0013740.1 MGP_AJ_G0011835.1 mouse_genomes_project 2 119299338 119299724 + processed_pseudogene processed_pseudogene MGP_AJ_T0007427.1 MGP_AJ_G0006087.1 mouse_genomes_project 2 169885288 169962229 + Gm14266 lincRNA lincRNA MGP_AJ_T0007430.1 MGP_AJ_G0006087.1 mouse_genomes_project 2 169946220 169964387 + Gm14266 lincRNA lincRNA MGP_AJ_T0004141.1 MGP_AJ_G0003660.1 mouse_genomes_project 2 154853597 154854641 - Gm14170 antisense antisense MGP_AJ_T0053562.1 MGP_AJ_G0025501.1 mouse_genomes_project 2 25559142 25559524 + MGP_AJ_P0053562 protein_coding protein_coding MGP_AJ_T0057396.1 MGP_AJ_G0026391.1 mouse_genomes_project 2 123254397 123457759 - MGP_AJ_P0057396 Fbn1 protein_coding protein_coding MGP_AJ_T0057397.1 MGP_AJ_G0026391.1 mouse_genomes_project 2 123254430 123459367 - MGP_AJ_P0057397 Fbn1 protein_coding protein_coding MGP_AJ_T0057398.1 MGP_AJ_G0026391.1 mouse_genomes_project 2 123345758 123457446 - Fbn1 protein_coding retained_intron MGP_AJ_T0013654.1 MGP_AJ_G0011749.1 mouse_genomes_project 2 85195301 85195758 - processed_pseudogene processed_pseudogene MGP_AJ_T0054162.1 MGP_AJ_G0025588.1 mouse_genomes_project 2 29721512 29723013 - MGP_AJ_P0054162 9430097D07Rik protein_coding protein_coding MGP_AJ_T0004072.1 MGP_AJ_G0003608.1 mouse_genomes_project 2 119720828 119721766 - Gm14019 antisense antisense MGP_AJ_T0057020.1 MGP_AJ_G0026324.1 mouse_genomes_project 2 118111635 118124073 - Pla2g4f protein_coding retained_intron MGP_AJ_T0057021.1 MGP_AJ_G0026324.1 mouse_genomes_project 2 118111644 118125841 - MGP_AJ_P0057021 Pla2g4f protein_coding protein_coding MGP_AJ_T0055283.1 MGP_AJ_G0025801.1 mouse_genomes_project 2 68764198 68838371 + MGP_AJ_P0055283 Metap1d protein_coding protein_coding MGP_AJ_T0055284.1 MGP_AJ_G0025801.1 mouse_genomes_project 2 68764255 68829099 + Metap1d protein_coding processed_transcript MGP_AJ_T0055285.1 MGP_AJ_G0025801.1 mouse_genomes_project 2 68764273 68838374 + Metap1d protein_coding processed_transcript MGP_AJ_T0055286.1 MGP_AJ_G0025801.1 mouse_genomes_project 2 68764285 68837966 + Metap1d protein_coding processed_transcript MGP_AJ_T0055287.1 MGP_AJ_G0025801.1 mouse_genomes_project 2 68823045 68830290 + Metap1d protein_coding processed_transcript MGP_AJ_T0055288.1 MGP_AJ_G0025801.1 mouse_genomes_project 2 68828555 68829425 + Metap1d protein_coding processed_transcript MGP_AJ_T0099787.1 MGP_AJ_G0037753.1 mouse_genomes_project 2 130772776 130772879 + Gm22245 snRNA snRNA MGP_AJ_T0052563.1 MGP_AJ_G0025322.1 mouse_genomes_project 2 8660867 8661526 - MGP_AJ_P0052563 Gm17490 protein_coding protein_coding MGP_AJ_T0001063.1 MGP_AJ_G0000994.1 mouse_genomes_project 2 32633087 32634078 - TEC TEC MGP_AJ_T0013868.1 MGP_AJ_G0011963.1 mouse_genomes_project 2 165089383 165089879 - processed_pseudogene processed_pseudogene MGP_AJ_T0007339.1 MGP_AJ_G0006012.1 mouse_genomes_project 2 131017301 131018665 + Gm14102 lincRNA lincRNA MGP_AJ_T0101062.1 MGP_AJ_G0039028.1 mouse_genomes_project 2 125666420 125666478 + Gm22889 snoRNA snoRNA MGP_AJ_T0007285.1 MGP_AJ_G0005969.1 mouse_genomes_project 2 100833716 100837866 - Gm13869 lincRNA lincRNA MGP_AJ_T0013866.1 MGP_AJ_G0011961.1 mouse_genomes_project 2 164495559 164496156 - processed_pseudogene processed_pseudogene MGP_AJ_T0007336.1 MGP_AJ_G0006010.1 mouse_genomes_project 2 130532198 130550131 - Gm14095 lincRNA lincRNA MGP_AJ_T0059475.1 MGP_AJ_G0026889.1 mouse_genomes_project 2 166814318 166840194 - MGP_AJ_P0059475 Adnp protein_coding protein_coding MGP_AJ_T0059476.1 MGP_AJ_G0026889.1 mouse_genomes_project 2 166814318 166840384 - MGP_AJ_P0059476 Adnp protein_coding protein_coding MGP_AJ_T0059478.1 MGP_AJ_G0026889.1 mouse_genomes_project 2 166818300 166839981 - Adnp protein_coding processed_transcript MGP_AJ_T0059479.1 MGP_AJ_G0026889.1 mouse_genomes_project 2 166837628 166839981 - Adnp protein_coding retained_intron MGP_AJ_T0010466.1 MGP_AJ_G0008588.1 mouse_genomes_project 2 153804457 153804566 + Mir695 miRNA miRNA MGP_AJ_T0010456.1 MGP_AJ_G0008578.1 mouse_genomes_project 2 128571197 128571264 - Gm23876 miRNA miRNA MGP_AJ_T0059182.1 MGP_AJ_G0026824.1 mouse_genomes_project 2 163101736 163105816 - MGP_AJ_P0059182 Spint3 protein_coding protein_coding MGP_AJ_T0013518.1 MGP_AJ_G0011613.1 mouse_genomes_project 2 42063805 42066615 + processed_pseudogene processed_pseudogene MGP_AJ_T0058851.1 MGP_AJ_G0026741.1 mouse_genomes_project 2 155586201 155595629 + MGP_AJ_P0058851 Tldc2 protein_coding protein_coding MGP_AJ_T0058852.1 MGP_AJ_G0026741.1 mouse_genomes_project 2 155587599 155595630 + MGP_AJ_P0058852 Tldc2 protein_coding protein_coding MGP_AJ_T0059329.1 MGP_AJ_G0026862.1 mouse_genomes_project 2 164061093 164075145 + MGP_AJ_P0059329 Slc2a10 protein_coding protein_coding MGP_AJ_T0059330.1 MGP_AJ_G0026862.1 mouse_genomes_project 2 164064372 164070010 + Slc2a10 protein_coding processed_transcript MGP_AJ_T0001065.1 MGP_AJ_G0000996.1 mouse_genomes_project 2 33047003 33049991 + TEC TEC MGP_AJ_T0059740.1 MGP_AJ_G0026957.1 mouse_genomes_project 2 179096316 179112916 - MGP_AJ_P0059740 Cables2 protein_coding protein_coding MGP_AJ_T0059741.1 MGP_AJ_G0026957.1 mouse_genomes_project 2 179096324 179112883 - Cables2 protein_coding retained_intron MGP_AJ_T0059742.1 MGP_AJ_G0026957.1 mouse_genomes_project 2 179099820 179101185 - Cables2 protein_coding retained_intron MGP_AJ_T0059743.1 MGP_AJ_G0026957.1 mouse_genomes_project 2 179101551 179112916 - Cables2 protein_coding retained_intron MGP_AJ_T0059744.1 MGP_AJ_G0026957.1 mouse_genomes_project 2 179102274 179112866 - Cables2 protein_coding retained_intron MGP_AJ_T0057662.1 MGP_AJ_G0026460.1 mouse_genomes_project 2 128232633 128303359 + MGP_AJ_P0057662 Tmc2 protein_coding protein_coding MGP_AJ_T0057663.1 MGP_AJ_G0026460.1 mouse_genomes_project 2 128233982 128303131 + MGP_AJ_P0057663 Tmc2 protein_coding protein_coding MGP_AJ_T0055898.1 MGP_AJ_G0026032.1 mouse_genomes_project 2 86510168 86512594 + MGP_AJ_P0055898 Olfr1206 protein_coding protein_coding MGP_AJ_T0055904.1 MGP_AJ_G0026038.1 mouse_genomes_project 2 86627841 86635169 - MGP_AJ_P0055904 protein_coding protein_coding MGP_AJ_T0055905.1 MGP_AJ_G0026038.1 mouse_genomes_project 2 86628340 86635144 - protein_coding processed_transcript MGP_AJ_T0055906.1 MGP_AJ_G0026038.1 mouse_genomes_project 2 86628557 86635163 - protein_coding processed_transcript MGP_AJ_T0056665.1 MGP_AJ_G0026213.1 mouse_genomes_project 2 108861270 108862209 - MGP_AJ_P0056665 Olfr1275 protein_coding protein_coding MGP_AJ_T0052566.1 MGP_AJ_G0025324.1 mouse_genomes_project 2 8712716 8774766 + MGP_AJ_P0052566 protein_coding protein_coding MGP_AJ_T0052568.1 MGP_AJ_G0025324.1 mouse_genomes_project 2 8744779 8774069 + protein_coding processed_transcript MGP_AJ_T0052569.1 MGP_AJ_G0025324.1 mouse_genomes_project 2 8744825 8757894 + protein_coding retained_intron MGP_AJ_T0052570.1 MGP_AJ_G0025324.1 mouse_genomes_project 2 8744837 8774412 + protein_coding processed_transcript MGP_AJ_T0052571.1 MGP_AJ_G0025324.1 mouse_genomes_project 2 8744893 8774426 + MGP_AJ_P0052571 protein_coding protein_coding MGP_AJ_T0052572.1 MGP_AJ_G0025324.1 mouse_genomes_project 2 8745002 8773845 + protein_coding processed_transcript MGP_AJ_T0052573.1 MGP_AJ_G0025324.1 mouse_genomes_project 2 8745162 8759433 + MGP_AJ_P0052573 protein_coding protein_coding MGP_AJ_T0052574.1 MGP_AJ_G0025324.1 mouse_genomes_project 2 8745209 8759720 + protein_coding retained_intron MGP_AJ_T0052575.1 MGP_AJ_G0025324.1 mouse_genomes_project 2 8745227 8774430 + MGP_AJ_P0052575 protein_coding protein_coding MGP_AJ_T0052576.1 MGP_AJ_G0025324.1 mouse_genomes_project 2 8745260 8773845 + MGP_AJ_P0052576 protein_coding protein_coding MGP_AJ_T0052577.1 MGP_AJ_G0025324.1 mouse_genomes_project 2 8745260 8774761 + MGP_AJ_P0052577 protein_coding protein_coding MGP_AJ_T0052578.1 MGP_AJ_G0025324.1 mouse_genomes_project 2 8745261 8773845 + MGP_AJ_P0052578 protein_coding protein_coding MGP_AJ_T0052579.1 MGP_AJ_G0025324.1 mouse_genomes_project 2 8745298 8773693 + MGP_AJ_P0052579 protein_coding protein_coding MGP_AJ_T0052580.1 MGP_AJ_G0025324.1 mouse_genomes_project 2 8757654 8759614 + protein_coding retained_intron MGP_AJ_T0052581.1 MGP_AJ_G0025324.1 mouse_genomes_project 2 8757758 8773861 + MGP_AJ_P0052581 protein_coding protein_coding MGP_AJ_T0052582.1 MGP_AJ_G0025324.1 mouse_genomes_project 2 8762491 8774412 + protein_coding retained_intron MGP_AJ_T0056650.1 MGP_AJ_G0026207.1 mouse_genomes_project 2 108221391 108285522 + MGP_AJ_P0056650 Slc5a12 protein_coding protein_coding MGP_AJ_T0056651.1 MGP_AJ_G0026207.1 mouse_genomes_project 2 108221400 108285532 + MGP_AJ_P0056651 Slc5a12 protein_coding protein_coding MGP_AJ_T0056652.1 MGP_AJ_G0026207.1 mouse_genomes_project 2 108221512 108256117 + Slc5a12 protein_coding retained_intron MGP_AJ_T0056653.1 MGP_AJ_G0026207.1 mouse_genomes_project 2 108221817 108231116 + Slc5a12 protein_coding processed_transcript MGP_AJ_T0056654.1 MGP_AJ_G0026207.1 mouse_genomes_project 2 108231050 108284337 + Slc5a12 protein_coding processed_transcript MGP_AJ_T0003930.1 MGP_AJ_G0003507.1 mouse_genomes_project 2 23662147 23667691 + Snhg7os antisense antisense MGP_AJ_T0003931.1 MGP_AJ_G0003507.1 mouse_genomes_project 2 23665061 23667691 + Snhg7os antisense antisense MGP_AJ_T0003932.1 MGP_AJ_G0003507.1 mouse_genomes_project 2 23665635 23667691 + Snhg7os antisense antisense MGP_AJ_T0055440.1 MGP_AJ_G0025834.1 mouse_genomes_project 2 73046755 73056592 + MGP_AJ_P0055440 protein_coding protein_coding MGP_AJ_T0055441.1 MGP_AJ_G0025834.1 mouse_genomes_project 2 73050232 73053112 + MGP_AJ_P0055441 protein_coding protein_coding MGP_AJ_T0007381.1 MGP_AJ_G0006047.1 mouse_genomes_project 2 158542920 158566774 + 9130015L21Rik lincRNA lincRNA MGP_AJ_T0010438.1 MGP_AJ_G0008560.1 mouse_genomes_project 2 92177949 92178030 - Gm44461 miRNA miRNA MGP_AJ_T0057501.1 MGP_AJ_G0026416.1 mouse_genomes_project 2 125192185 125206417 + Snrnp200 protein_coding retained_intron MGP_AJ_T0057502.1 MGP_AJ_G0026416.1 mouse_genomes_project 2 125192198 125224347 + MGP_AJ_P0057502 Snrnp200 protein_coding protein_coding MGP_AJ_T0057503.1 MGP_AJ_G0026416.1 mouse_genomes_project 2 125205267 125208859 + Snrnp200 protein_coding processed_transcript MGP_AJ_T0057504.1 MGP_AJ_G0026416.1 mouse_genomes_project 2 125220682 125222214 + Snrnp200 protein_coding retained_intron MGP_AJ_T0057505.1 MGP_AJ_G0026416.1 mouse_genomes_project 2 125221979 125223856 + Snrnp200 protein_coding retained_intron MGP_AJ_T0017812.1 MGP_AJ_G0015423.1 mouse_genomes_project 2 91616937 91620479 + Alkbh3os1 processed_transcript processed_transcript MGP_AJ_T0010367.1 MGP_AJ_G0008489.1 mouse_genomes_project 2 7539354 7539452 + Mir297a-4 miRNA miRNA MGP_AJ_T0056420.1 MGP_AJ_G0026160.1 mouse_genomes_project 2 100439948 100532347 - MGP_AJ_P0056420 Cd44 protein_coding unknown_likely_coding MGP_AJ_T0056421.1 MGP_AJ_G0026160.1 mouse_genomes_project 2 100439951 100532626 - MGP_AJ_P0056421 Cd44 protein_coding protein_coding MGP_AJ_T0056422.1 MGP_AJ_G0026160.1 mouse_genomes_project 2 100439951 100532666 - MGP_AJ_P0056422 Cd44 protein_coding protein_coding MGP_AJ_T0056423.1 MGP_AJ_G0026160.1 mouse_genomes_project 2 100441340 100532496 - MGP_AJ_P0056423 Cd44 protein_coding protein_coding MGP_AJ_T0056424.1 MGP_AJ_G0026160.1 mouse_genomes_project 2 100441357 100532511 - MGP_AJ_P0056424 Cd44 protein_coding protein_coding MGP_AJ_T0056425.1 MGP_AJ_G0026160.1 mouse_genomes_project 2 100442930 100532370 - MGP_AJ_P0056425 Cd44 protein_coding protein_coding MGP_AJ_T0056426.1 MGP_AJ_G0026160.1 mouse_genomes_project 2 100442930 100532351 - MGP_AJ_P0056426 Cd44 protein_coding protein_coding MGP_AJ_T0056427.1 MGP_AJ_G0026160.1 mouse_genomes_project 2 100442940 100532351 - MGP_AJ_P0056427 Cd44 protein_coding protein_coding MGP_AJ_T0056428.1 MGP_AJ_G0026160.1 mouse_genomes_project 2 100442943 100532347 - MGP_AJ_P0056428 Cd44 protein_coding protein_coding MGP_AJ_T0056429.1 MGP_AJ_G0026160.1 mouse_genomes_project 2 100480664 100532459 - Cd44 protein_coding retained_intron MGP_AJ_T0099798.1 MGP_AJ_G0037764.1 mouse_genomes_project 2 161340409 161340567 - Gm24478 snRNA snRNA MGP_AJ_T0056547.1 MGP_AJ_G0026186.1 mouse_genomes_project 2 102661545 102669194 - Eif3m protein_coding retained_intron MGP_AJ_T0056548.1 MGP_AJ_G0026186.1 mouse_genomes_project 2 102661545 102679877 - MGP_AJ_P0056548 Eif3m protein_coding protein_coding MGP_AJ_T0056549.1 MGP_AJ_G0026186.1 mouse_genomes_project 2 102661548 102668748 - MGP_AJ_P0056549 Eif3m protein_coding protein_coding MGP_AJ_T0056550.1 MGP_AJ_G0026186.1 mouse_genomes_project 2 102661578 102679840 - MGP_AJ_P0056550 Eif3m protein_coding protein_coding MGP_AJ_T0057267.1 MGP_AJ_G0026360.1 mouse_genomes_project 2 119390667 119662701 - MGP_AJ_P0057267 Frmd5 protein_coding protein_coding MGP_AJ_T0057268.1 MGP_AJ_G0026360.1 mouse_genomes_project 2 119390673 119662927 - MGP_AJ_P0057268 Frmd5 protein_coding protein_coding MGP_AJ_T0057269.1 MGP_AJ_G0026360.1 mouse_genomes_project 2 119390673 119619087 - MGP_AJ_P0057269 Frmd5 protein_coding protein_coding MGP_AJ_T0057270.1 MGP_AJ_G0026360.1 mouse_genomes_project 2 119390673 119432800 - MGP_AJ_P0057270 Frmd5 protein_coding protein_coding MGP_AJ_T0057271.1 MGP_AJ_G0026360.1 mouse_genomes_project 2 119392882 119401482 - MGP_AJ_P0057271 Frmd5 protein_coding protein_coding MGP_AJ_T0057272.1 MGP_AJ_G0026360.1 mouse_genomes_project 2 119393440 119619087 - MGP_AJ_P0057272 Frmd5 protein_coding protein_coding MGP_AJ_T0057273.1 MGP_AJ_G0026360.1 mouse_genomes_project 2 119393442 119662863 - MGP_AJ_P0057273 Frmd5 protein_coding nonsense_mediated_decay MGP_AJ_T0057274.1 MGP_AJ_G0026360.1 mouse_genomes_project 2 119393443 119662832 - MGP_AJ_P0057274 Frmd5 protein_coding protein_coding MGP_AJ_T0057275.1 MGP_AJ_G0026360.1 mouse_genomes_project 2 119394184 119404526 - Frmd5 protein_coding processed_transcript MGP_AJ_T0057276.1 MGP_AJ_G0026360.1 mouse_genomes_project 2 119407150 119662897 - Frmd5 protein_coding retained_intron MGP_AJ_T0057277.1 MGP_AJ_G0026360.1 mouse_genomes_project 2 119414683 119662712 - MGP_AJ_P0057277 Frmd5 protein_coding nonsense_mediated_decay MGP_AJ_T0057278.1 MGP_AJ_G0026360.1 mouse_genomes_project 2 119414735 119430371 - Frmd5 protein_coding processed_transcript MGP_AJ_T0001087.1 MGP_AJ_G0001016.1 mouse_genomes_project 2 66284502 66285368 + TEC TEC MGP_AJ_T0013530.1 MGP_AJ_G0011625.1 mouse_genomes_project 2 47750007 47750289 + processed_pseudogene processed_pseudogene MGP_AJ_T0052833.1 MGP_AJ_G0025365.1 mouse_genomes_project 2 18222947 18247456 - MGP_AJ_P0052833 Enkur protein_coding protein_coding MGP_AJ_T0052834.1 MGP_AJ_G0025365.1 mouse_genomes_project 2 18236203 18247330 - Enkur protein_coding processed_transcript MGP_AJ_T0052835.1 MGP_AJ_G0025365.1 mouse_genomes_project 2 18238555 18247443 - Enkur protein_coding processed_transcript MGP_AJ_T0055746.1 MGP_AJ_G0025897.1 mouse_genomes_project 2 82537986 82573960 - MGP_AJ_P0055746 Lrrc55 protein_coding protein_coding MGP_AJ_T0055747.1 MGP_AJ_G0025897.1 mouse_genomes_project 2 82565331 82573960 - MGP_AJ_P0055747 Lrrc55 protein_coding protein_coding MGP_AJ_T0007443.1 MGP_AJ_G0006102.1 mouse_genomes_project 2 179745941 179747057 + Gm27032 lincRNA lincRNA MGP_AJ_T0101094.1 MGP_AJ_G0039060.1 mouse_genomes_project 2 163157014 163157145 + Gm24473 snoRNA snoRNA MGP_AJ_T0056528.1 MGP_AJ_G0026180.1 mouse_genomes_project 2 102318604 102344978 - Tcp11l1 protein_coding processed_transcript MGP_AJ_T0056531.1 MGP_AJ_G0026180.1 mouse_genomes_project 2 102338694 102370534 - MGP_AJ_P0056531 Tcp11l1 protein_coding protein_coding MGP_AJ_T0056532.1 MGP_AJ_G0026180.1 mouse_genomes_project 2 102340654 102370540 - MGP_AJ_P0056532 Tcp11l1 protein_coding protein_coding MGP_AJ_T0056533.1 MGP_AJ_G0026180.1 mouse_genomes_project 2 102345491 102370547 - Tcp11l1 protein_coding retained_intron MGP_AJ_T0056534.1 MGP_AJ_G0026180.1 mouse_genomes_project 2 102355381 102364392 - Tcp11l1 protein_coding processed_transcript MGP_AJ_T0056535.1 MGP_AJ_G0026180.1 mouse_genomes_project 2 102356927 102370471 - Tcp11l1 protein_coding processed_transcript MGP_AJ_T0056536.1 MGP_AJ_G0026180.1 mouse_genomes_project 2 102362874 102370544 - Tcp11l1 protein_coding processed_transcript MGP_AJ_T0007329.1 MGP_AJ_G0006005.1 mouse_genomes_project 2 126189387 126204702 + Gm14009 lincRNA lincRNA MGP_AJ_T0057630.1 MGP_AJ_G0026451.1 mouse_genomes_project 2 127307129 127317906 - MGP_AJ_P0057630 Il1a protein_coding protein_coding MGP_AJ_T0000339.1 MGP_AJ_G0000283.1 mouse_genomes_project 2 19472808 19472877 + Mt_tRNA Mt_tRNA MGP_AJ_T0059108.1 MGP_AJ_G0026796.1 mouse_genomes_project 2 162355841 162363998 + Wisp2 protein_coding processed_transcript MGP_AJ_T0059109.1 MGP_AJ_G0026796.1 mouse_genomes_project 2 162355869 162368170 + MGP_AJ_P0059109 Wisp2 protein_coding protein_coding MGP_AJ_T0057402.1 MGP_AJ_G0026394.1 mouse_genomes_project 2 123582761 123623566 - MGP_AJ_P0057402 Shc4 protein_coding unknown_likely_coding MGP_AJ_T0057403.1 MGP_AJ_G0026394.1 mouse_genomes_project 2 123582769 123673903 - MGP_AJ_P0057403 Shc4 protein_coding protein_coding MGP_AJ_T0057405.1 MGP_AJ_G0026394.1 mouse_genomes_project 2 123642408 123674664 - Shc4 protein_coding retained_intron MGP_AJ_T0001093.1 MGP_AJ_G0001022.1 mouse_genomes_project 2 100991459 100994863 - TEC TEC MGP_AJ_T0099766.1 MGP_AJ_G0037732.1 mouse_genomes_project 2 68807511 68807615 + Gm23253 snRNA snRNA MGP_AJ_T0058218.1 MGP_AJ_G0026596.1 mouse_genomes_project 2 148886487 148895146 - MGP_AJ_P0058218 Vsx1 protein_coding protein_coding MGP_AJ_T0013773.1 MGP_AJ_G0011868.1 mouse_genomes_project 2 132760530 132760843 - processed_pseudogene processed_pseudogene MGP_AJ_T0101989.1 MGP_AJ_G0039813.1 mouse_genomes_project 2 86249120 86251491 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_AJ_T0017732.1 MGP_AJ_G0015372.1 mouse_genomes_project 2 15796536 15815884 - Gm20539 processed_transcript processed_transcript MGP_AJ_T0004034.1 MGP_AJ_G0003583.1 mouse_genomes_project 2 82574192 82575934 + Gm13716 antisense antisense MGP_AJ_T0007217.1 MGP_AJ_G0005914.1 mouse_genomes_project 2 58256161 58267026 - Gm13582 lincRNA lincRNA MGP_AJ_T0102464.1 MGP_AJ_G0040206.1 mouse_genomes_project 2 34037367 34037949 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0004070.1 MGP_AJ_G0003606.1 mouse_genomes_project 2 117843461 117846048 - Gm13999 antisense antisense MGP_AJ_T0055877.1 MGP_AJ_G0026013.1 mouse_genomes_project 2 85785051 85786002 - MGP_AJ_P0055877 Olfr1170 protein_coding protein_coding MGP_AJ_T0101990.1 MGP_AJ_G0039814.1 mouse_genomes_project 2 172302897 172383090 - transcribed_unprocessed_pseudogene processed_transcript MGP_AJ_T0101991.1 MGP_AJ_G0039814.1 mouse_genomes_project 2 172304017 172383090 - transcribed_unprocessed_pseudogene processed_transcript MGP_AJ_T0101992.1 MGP_AJ_G0039814.1 mouse_genomes_project 2 172304778 172353196 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_AJ_T0101993.1 MGP_AJ_G0039814.1 mouse_genomes_project 2 172308483 172383090 - transcribed_unprocessed_pseudogene retained_intron MGP_AJ_T0101994.1 MGP_AJ_G0039814.1 mouse_genomes_project 2 172309427 172314383 - transcribed_unprocessed_pseudogene processed_transcript MGP_AJ_T0101995.1 MGP_AJ_G0039814.1 mouse_genomes_project 2 172310159 172314934 - transcribed_unprocessed_pseudogene retained_intron MGP_AJ_T0101996.1 MGP_AJ_G0039814.1 mouse_genomes_project 2 172319720 172383090 - transcribed_unprocessed_pseudogene processed_transcript MGP_AJ_T0101997.1 MGP_AJ_G0039814.1 mouse_genomes_project 2 172319720 172382919 - transcribed_unprocessed_pseudogene processed_transcript MGP_AJ_T0101998.1 MGP_AJ_G0039814.1 mouse_genomes_project 2 172320747 172332428 - transcribed_unprocessed_pseudogene processed_transcript MGP_AJ_T0101999.1 MGP_AJ_G0039814.1 mouse_genomes_project 2 172320761 172383191 - transcribed_unprocessed_pseudogene processed_transcript MGP_AJ_T0102000.1 MGP_AJ_G0039814.1 mouse_genomes_project 2 172332089 172383055 - transcribed_unprocessed_pseudogene retained_intron MGP_AJ_T0102001.1 MGP_AJ_G0039814.1 mouse_genomes_project 2 172338956 172383086 - transcribed_unprocessed_pseudogene retained_intron MGP_AJ_T0102470.1 MGP_AJ_G0040212.1 mouse_genomes_project 2 82531830 82534372 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0007407.1 MGP_AJ_G0006069.1 mouse_genomes_project 2 166402213 166403647 + 9230111E07Rik lincRNA lincRNA MGP_AJ_T0003927.1 MGP_AJ_G0003506.1 mouse_genomes_project 2 23398838 23404571 + Gm13563 antisense antisense MGP_AJ_T0003928.1 MGP_AJ_G0003506.1 mouse_genomes_project 2 23402864 23405107 + Gm13563 antisense antisense MGP_AJ_T0003929.1 MGP_AJ_G0003506.1 mouse_genomes_project 2 23404769 23406331 + Gm13563 antisense antisense MGP_AJ_T0007207.1 MGP_AJ_G0005906.1 mouse_genomes_project 2 48684095 48699584 - lincRNA lincRNA MGP_AJ_T0053256.1 MGP_AJ_G0025442.1 mouse_genomes_project 2 22676854 22680217 + MGP_AJ_P0053256 Lcn10 protein_coding protein_coding MGP_AJ_T0057510.1 MGP_AJ_G0026418.1 mouse_genomes_project 2 125231810 125245043 + MGP_AJ_P0057510 Tmem127 protein_coding protein_coding MGP_AJ_T0057511.1 MGP_AJ_G0026418.1 mouse_genomes_project 2 125231871 125241051 + MGP_AJ_P0057511 Tmem127 protein_coding protein_coding MGP_AJ_T0057512.1 MGP_AJ_G0026418.1 mouse_genomes_project 2 125231875 125241423 + MGP_AJ_P0057512 Tmem127 protein_coding protein_coding MGP_AJ_T0004127.1 MGP_AJ_G0003647.1 mouse_genomes_project 2 150225209 150228574 - Gm14154 antisense antisense MGP_AJ_T0013524.1 MGP_AJ_G0011619.1 mouse_genomes_project 2 45622486 45622738 + processed_pseudogene processed_pseudogene MGP_AJ_T0055503.1 MGP_AJ_G0025848.1 mouse_genomes_project 2 74417632 74586153 - MGP_AJ_P0055503 Ccdc141 protein_coding unknown_likely_coding MGP_AJ_T0055504.1 MGP_AJ_G0025848.1 mouse_genomes_project 2 74417635 74585041 - MGP_AJ_P0055504 Ccdc141 protein_coding protein_coding MGP_AJ_T0055505.1 MGP_AJ_G0025848.1 mouse_genomes_project 2 74419280 74427652 - MGP_AJ_P0055505 Ccdc141 protein_coding protein_coding MGP_AJ_T0055506.1 MGP_AJ_G0025848.1 mouse_genomes_project 2 74422785 74430431 - Ccdc141 protein_coding processed_transcript MGP_AJ_T0055507.1 MGP_AJ_G0025848.1 mouse_genomes_project 2 74431121 74438385 - Ccdc141 protein_coding retained_intron MGP_AJ_T0055508.1 MGP_AJ_G0025848.1 mouse_genomes_project 2 74438382 74451665 - Ccdc141 protein_coding retained_intron MGP_AJ_T0055509.1 MGP_AJ_G0025848.1 mouse_genomes_project 2 74438382 74452315 - MGP_AJ_P0055509 Ccdc141 protein_coding protein_coding MGP_AJ_T0055510.1 MGP_AJ_G0025848.1 mouse_genomes_project 2 74452555 74585042 - Ccdc141 protein_coding retained_intron MGP_AJ_T0055511.1 MGP_AJ_G0025848.1 mouse_genomes_project 2 74482233 74585016 - Ccdc141 protein_coding retained_intron MGP_AJ_T0055512.1 MGP_AJ_G0025848.1 mouse_genomes_project 2 74546264 74585006 - MGP_AJ_P0055512 Ccdc141 protein_coding nonsense_mediated_decay MGP_AJ_T0055513.1 MGP_AJ_G0025848.1 mouse_genomes_project 2 74576388 74584982 - MGP_AJ_P0055513 Ccdc141 protein_coding protein_coding MGP_AJ_T0055954.1 MGP_AJ_G0026074.1 mouse_genomes_project 2 87516773 87520201 + MGP_AJ_P0055954 Olfr1258 protein_coding protein_coding MGP_AJ_T0055955.1 MGP_AJ_G0026074.1 mouse_genomes_project 2 87519265 87520201 + MGP_AJ_P0055955 Olfr1258 protein_coding protein_coding MGP_AJ_T0013749.1 MGP_AJ_G0011844.1 mouse_genomes_project 2 126559557 126560538 - processed_pseudogene processed_pseudogene MGP_AJ_T0010455.1 MGP_AJ_G0008577.1 mouse_genomes_project 2 128053372 128053489 - Mir6339 miRNA miRNA MGP_AJ_T0007230.1 MGP_AJ_G0005927.1 mouse_genomes_project 2 70086797 70154909 - 6430710C18Rik lincRNA lincRNA MGP_AJ_T0007231.1 MGP_AJ_G0005927.1 mouse_genomes_project 2 70087456 70091818 - 6430710C18Rik lincRNA lincRNA MGP_AJ_T0007232.1 MGP_AJ_G0005927.1 mouse_genomes_project 2 70126239 70154954 - 6430710C18Rik lincRNA lincRNA MGP_AJ_T0007233.1 MGP_AJ_G0005927.1 mouse_genomes_project 2 70126556 70141711 - 6430710C18Rik lincRNA lincRNA MGP_AJ_T0013715.1 MGP_AJ_G0011810.1 mouse_genomes_project 2 108812975 108817745 + processed_pseudogene processed_pseudogene MGP_AJ_T0057795.1 MGP_AJ_G0026488.1 mouse_genomes_project 2 129217518 129221239 - MGP_AJ_P0057795 Spef1 protein_coding protein_coding MGP_AJ_T0059868.1 MGP_AJ_G0026984.1 mouse_genomes_project 2 180157810 180165826 - MGP_AJ_P0059868 Stmn3 protein_coding protein_coding MGP_AJ_T0054542.1 MGP_AJ_G0025673.1 mouse_genomes_project 2 34658645 34714011 + MGP_AJ_P0054542 Rabgap1 protein_coding protein_coding MGP_AJ_T0054543.1 MGP_AJ_G0025673.1 mouse_genomes_project 2 34658651 34784891 + MGP_AJ_P0054543 Rabgap1 protein_coding protein_coding MGP_AJ_T0054544.1 MGP_AJ_G0025673.1 mouse_genomes_project 2 34658662 34706591 + Rabgap1 protein_coding retained_intron MGP_AJ_T0054545.1 MGP_AJ_G0025673.1 mouse_genomes_project 2 34666999 34669152 + Rabgap1 protein_coding processed_transcript MGP_AJ_T0054546.1 MGP_AJ_G0025673.1 mouse_genomes_project 2 34667608 34692213 + MGP_AJ_P0054546 Rabgap1 protein_coding protein_coding MGP_AJ_T0054547.1 MGP_AJ_G0025673.1 mouse_genomes_project 2 34667608 34763432 + MGP_AJ_P0054547 Rabgap1 protein_coding protein_coding MGP_AJ_T0054548.1 MGP_AJ_G0025673.1 mouse_genomes_project 2 34667630 34784908 + MGP_AJ_P0054548 Rabgap1 protein_coding protein_coding MGP_AJ_T0054550.1 MGP_AJ_G0025673.1 mouse_genomes_project 2 34709287 34712368 + Rabgap1 protein_coding retained_intron MGP_AJ_T0054551.1 MGP_AJ_G0025673.1 mouse_genomes_project 2 34710352 34727631 + Rabgap1 protein_coding processed_transcript MGP_AJ_T0054553.1 MGP_AJ_G0025673.1 mouse_genomes_project 2 34734986 34783507 + Rabgap1 protein_coding processed_transcript MGP_AJ_T0017787.1 MGP_AJ_G0015408.1 mouse_genomes_project 2 81159675 81194683 - Gm13684 processed_transcript processed_transcript MGP_AJ_T0101009.1 MGP_AJ_G0038975.1 mouse_genomes_project 2 7094465 7094593 - Gm23608 snoRNA snoRNA MGP_AJ_T0004078.1 MGP_AJ_G0003614.1 mouse_genomes_project 2 126755045 126757480 - Gm14011 antisense antisense MGP_AJ_T0007340.1 MGP_AJ_G0006013.1 mouse_genomes_project 2 131481119 131502346 + A430048G15Rik lincRNA lincRNA MGP_AJ_T0053812.1 MGP_AJ_G0025541.1 mouse_genomes_project 2 27368640 27370744 - MGP_AJ_P0053812 Dolk protein_coding protein_coding MGP_AJ_T0013786.1 MGP_AJ_G0011881.1 mouse_genomes_project 2 140622409 140623339 + processed_pseudogene processed_pseudogene MGP_AJ_T0013619.1 MGP_AJ_G0011714.1 mouse_genomes_project 2 77960026 77960308 + processed_pseudogene processed_pseudogene MGP_AJ_T0058667.1 MGP_AJ_G0026714.1 mouse_genomes_project 2 154407996 154410019 + MGP_AJ_P0058667 Gm15557 protein_coding protein_coding MGP_AJ_T0055748.1 MGP_AJ_G0025898.1 mouse_genomes_project 2 82769747 82770677 - MGP_AJ_P0055748 Olfr992 protein_coding protein_coding MGP_AJ_T0058441.1 MGP_AJ_G0026660.1 mouse_genomes_project 2 151808825 151809906 + MGP_AJ_P0058441 4930404H24Rik protein_coding protein_coding MGP_AJ_T0057431.1 MGP_AJ_G0026402.1 mouse_genomes_project 2 124273438 124455760 - MGP_AJ_P0057431 Atp8b4 protein_coding protein_coding MGP_AJ_T0057432.1 MGP_AJ_G0026402.1 mouse_genomes_project 2 124275000 124447487 - MGP_AJ_P0057432 Atp8b4 protein_coding protein_coding MGP_AJ_T0057433.1 MGP_AJ_G0026402.1 mouse_genomes_project 2 124324104 124447467 - Atp8b4 protein_coding retained_intron MGP_AJ_T0057434.1 MGP_AJ_G0026402.1 mouse_genomes_project 2 124324150 124455902 - MGP_AJ_P0057434 Atp8b4 protein_coding nonsense_mediated_decay MGP_AJ_T0057435.1 MGP_AJ_G0026402.1 mouse_genomes_project 2 124345594 124456587 - MGP_AJ_P0057435 Atp8b4 protein_coding protein_coding MGP_AJ_T0054942.1 MGP_AJ_G0025738.1 mouse_genomes_project 2 57699871 57836020 - MGP_AJ_P0054942 Pla2r1 protein_coding protein_coding MGP_AJ_T0054943.1 MGP_AJ_G0025738.1 mouse_genomes_project 2 57702353 57706821 - Pla2r1 protein_coding processed_transcript MGP_AJ_T0054944.1 MGP_AJ_G0025738.1 mouse_genomes_project 2 57723439 57725974 - Pla2r1 protein_coding retained_intron MGP_AJ_T0054945.1 MGP_AJ_G0025738.1 mouse_genomes_project 2 57733918 57836020 - Pla2r1 protein_coding retained_intron MGP_AJ_T0054946.1 MGP_AJ_G0025738.1 mouse_genomes_project 2 57734801 57738064 - Pla2r1 protein_coding retained_intron MGP_AJ_T0054947.1 MGP_AJ_G0025738.1 mouse_genomes_project 2 57816469 57836020 - Pla2r1 protein_coding retained_intron MGP_AJ_T0007200.1 MGP_AJ_G0005899.1 mouse_genomes_project 2 43044936 43048819 - Gm13467 lincRNA lincRNA MGP_AJ_T0101017.1 MGP_AJ_G0038983.1 mouse_genomes_project 2 23660993 23661125 - Snora17 snoRNA snoRNA MGP_AJ_T0052396.1 MGP_AJ_G0025294.1 mouse_genomes_project 2 1898952 1918428 + MGP_AJ_P0052396 Phyh protein_coding protein_coding MGP_AJ_T0052397.1 MGP_AJ_G0025294.1 mouse_genomes_project 2 1899013 1908946 + Phyh protein_coding processed_transcript MGP_AJ_T0052398.1 MGP_AJ_G0025294.1 mouse_genomes_project 2 1917180 1918041 + Phyh protein_coding processed_transcript MGP_AJ_T0057261.1 MGP_AJ_G0026357.1 mouse_genomes_project 2 119316976 119347173 - MGP_AJ_P0057261 protein_coding unknown_likely_coding MGP_AJ_T0057263.1 MGP_AJ_G0026357.1 mouse_genomes_project 2 119317139 119347204 - MGP_AJ_P0057263 protein_coding protein_coding MGP_AJ_T0099744.1 MGP_AJ_G0037710.1 mouse_genomes_project 2 4347203 4347300 + Gm24340 snRNA snRNA MGP_AJ_T0013487.1 MGP_AJ_G0011582.1 mouse_genomes_project 2 31622927 31623183 - processed_pseudogene processed_pseudogene MGP_AJ_T0053049.1 MGP_AJ_G0025403.1 mouse_genomes_project 2 22199279 22200411 - protein_coding processed_transcript MGP_AJ_T0013865.1 MGP_AJ_G0011960.1 mouse_genomes_project 2 164228077 164228438 - processed_pseudogene processed_pseudogene MGP_AJ_T0057978.1 MGP_AJ_G0026527.1 mouse_genomes_project 2 136364328 136640517 + Btbd3 protein_coding processed_transcript MGP_AJ_T0057979.1 MGP_AJ_G0026527.1 mouse_genomes_project 2 136364336 136690601 + Btbd3 protein_coding processed_transcript MGP_AJ_T0057980.1 MGP_AJ_G0026527.1 mouse_genomes_project 2 136386573 136392156 + MGP_AJ_P0057980 Btbd3 protein_coding protein_coding MGP_AJ_T0058021.1 MGP_AJ_G0026538.1 mouse_genomes_project 2 141108142 141117967 + MGP_AJ_P0058021 Snrpb2 protein_coding protein_coding MGP_AJ_T0058022.1 MGP_AJ_G0026538.1 mouse_genomes_project 2 141108164 141110850 + Snrpb2 protein_coding retained_intron MGP_AJ_T0058023.1 MGP_AJ_G0026538.1 mouse_genomes_project 2 141108234 141114543 + MGP_AJ_P0058023 Snrpb2 protein_coding protein_coding MGP_AJ_T0058024.1 MGP_AJ_G0026538.1 mouse_genomes_project 2 141109515 141114543 + Snrpb2 protein_coding retained_intron MGP_AJ_T0058025.1 MGP_AJ_G0026538.1 mouse_genomes_project 2 141113288 141117967 + Snrpb2 protein_coding retained_intron MGP_AJ_T0013713.1 MGP_AJ_G0011808.1 mouse_genomes_project 2 107444971 107446135 - processed_pseudogene processed_pseudogene MGP_AJ_T0000338.1 MGP_AJ_G0000282.1 mouse_genomes_project 2 19472735 19472805 - Mt_tRNA Mt_tRNA MGP_AJ_T0004059.1 MGP_AJ_G0003599.1 mouse_genomes_project 2 111798846 111817322 + antisense antisense MGP_AJ_T0004060.1 MGP_AJ_G0003599.1 mouse_genomes_project 2 111798907 111817299 + antisense antisense MGP_AJ_T0004061.1 MGP_AJ_G0003599.1 mouse_genomes_project 2 111799748 111816787 + antisense antisense MGP_AJ_T0004062.1 MGP_AJ_G0003599.1 mouse_genomes_project 2 111802359 111817091 + antisense antisense MGP_AJ_T0004063.1 MGP_AJ_G0003599.1 mouse_genomes_project 2 111802384 111820786 + antisense antisense MGP_AJ_T0102467.1 MGP_AJ_G0040209.1 mouse_genomes_project 2 36221065 36224543 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0102479.1 MGP_AJ_G0040221.1 mouse_genomes_project 2 83516657 83517614 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0057958.1 MGP_AJ_G0026522.1 mouse_genomes_project 2 134587637 134601904 + protein_coding processed_transcript MGP_AJ_T0057959.1 MGP_AJ_G0026522.1 mouse_genomes_project 2 134587682 134592475 + protein_coding processed_transcript MGP_AJ_T0057960.1 MGP_AJ_G0026522.1 mouse_genomes_project 2 134587718 134637738 + MGP_AJ_P0057960 protein_coding nonsense_mediated_decay MGP_AJ_T0057961.1 MGP_AJ_G0026522.1 mouse_genomes_project 2 134587908 134599942 + protein_coding processed_transcript MGP_AJ_T0057962.1 MGP_AJ_G0026522.1 mouse_genomes_project 2 134601907 134636436 + MGP_AJ_P0057962 protein_coding protein_coding MGP_AJ_T0057963.1 MGP_AJ_G0026522.1 mouse_genomes_project 2 134617966 134642106 + MGP_AJ_P0057963 protein_coding unknown_likely_coding MGP_AJ_T0057964.1 MGP_AJ_G0026522.1 mouse_genomes_project 2 134639196 134639992 + protein_coding processed_transcript MGP_AJ_T0057965.1 MGP_AJ_G0026522.1 mouse_genomes_project 2 134639211 134642166 + protein_coding processed_transcript MGP_AJ_T0017735.1 MGP_AJ_G0015374.1 mouse_genomes_project 2 21388936 21436490 + Gm13415 processed_transcript antisense MGP_AJ_T0017736.1 MGP_AJ_G0015374.1 mouse_genomes_project 2 21391353 21414816 + Gm13415 processed_transcript antisense MGP_AJ_T0017737.1 MGP_AJ_G0015374.1 mouse_genomes_project 2 21391367 21393783 + Gm13415 processed_transcript retained_intron MGP_AJ_T0057721.1 MGP_AJ_G0026476.1 mouse_genomes_project 2 128673734 128678997 - MGP_AJ_P0057721 Lzts3 protein_coding protein_coding MGP_AJ_T0057722.1 MGP_AJ_G0026476.1 mouse_genomes_project 2 128673734 128678997 - MGP_AJ_P0057722 Lzts3 protein_coding protein_coding MGP_AJ_T0057723.1 MGP_AJ_G0026476.1 mouse_genomes_project 2 128673737 128683703 - MGP_AJ_P0057723 Lzts3 protein_coding protein_coding MGP_AJ_T0010444.1 MGP_AJ_G0008566.1 mouse_genomes_project 2 111909102 111909157 - Mir7002 miRNA miRNA MGP_AJ_T0059140.1 MGP_AJ_G0026811.1 mouse_genomes_project 2 162814221 162816693 + MGP_AJ_P0059140 protein_coding protein_coding MGP_AJ_T0053497.1 MGP_AJ_G0025487.1 mouse_genomes_project 2 24133667 24166438 - MGP_AJ_P0053497 Fam163b protein_coding protein_coding MGP_AJ_T0055683.1 MGP_AJ_G0025880.1 mouse_genomes_project 2 82073664 82100975 - MGP_AJ_P0055683 Zdhhc5 protein_coding protein_coding MGP_AJ_T0055684.1 MGP_AJ_G0025880.1 mouse_genomes_project 2 82096928 82100481 - Zdhhc5 protein_coding processed_transcript MGP_AJ_T0055685.1 MGP_AJ_G0025880.1 mouse_genomes_project 2 82097077 82100831 - Zdhhc5 protein_coding processed_transcript MGP_AJ_T0059186.1 MGP_AJ_G0026828.1 mouse_genomes_project 2 163129401 163148107 - MGP_AJ_P0059186 Wfdc8 protein_coding protein_coding MGP_AJ_T0059187.1 MGP_AJ_G0026828.1 mouse_genomes_project 2 163129409 163147328 - MGP_AJ_P0059187 Wfdc8 protein_coding protein_coding MGP_AJ_T0059188.1 MGP_AJ_G0026828.1 mouse_genomes_project 2 163130155 163148107 - MGP_AJ_P0059188 Wfdc8 protein_coding protein_coding MGP_AJ_T0057152.1 MGP_AJ_G0026343.1 mouse_genomes_project 2 118949439 118954153 + Adal protein_coding retained_intron MGP_AJ_T0057153.1 MGP_AJ_G0026343.1 mouse_genomes_project 2 118949450 118965781 + MGP_AJ_P0057153 Adal protein_coding protein_coding MGP_AJ_T0057154.1 MGP_AJ_G0026343.1 mouse_genomes_project 2 118949455 118954151 + Adal protein_coding retained_intron MGP_AJ_T0057155.1 MGP_AJ_G0026343.1 mouse_genomes_project 2 118949464 118959435 + Adal protein_coding processed_transcript MGP_AJ_T0057156.1 MGP_AJ_G0026343.1 mouse_genomes_project 2 118949510 118964692 + MGP_AJ_P0057156 Adal protein_coding protein_coding MGP_AJ_T0057157.1 MGP_AJ_G0026343.1 mouse_genomes_project 2 118949532 118959623 + Adal protein_coding retained_intron MGP_AJ_T0057158.1 MGP_AJ_G0026343.1 mouse_genomes_project 2 118949806 118964650 + MGP_AJ_P0057158 Adal protein_coding protein_coding MGP_AJ_T0057159.1 MGP_AJ_G0026343.1 mouse_genomes_project 2 118959198 118965442 + Adal protein_coding retained_intron MGP_AJ_T0054361.1 MGP_AJ_G0025619.1 mouse_genomes_project 2 31993013 32011407 - Fbxw2 protein_coding processed_transcript MGP_AJ_T0054362.1 MGP_AJ_G0025619.1 mouse_genomes_project 2 31993677 32014560 - MGP_AJ_P0054362 Fbxw2 protein_coding protein_coding MGP_AJ_T0054363.1 MGP_AJ_G0025619.1 mouse_genomes_project 2 31993837 32011668 - MGP_AJ_P0054363 Fbxw2 protein_coding protein_coding MGP_AJ_T0054364.1 MGP_AJ_G0025619.1 mouse_genomes_project 2 31993838 32014722 - MGP_AJ_P0054364 Fbxw2 protein_coding protein_coding MGP_AJ_T0054365.1 MGP_AJ_G0025619.1 mouse_genomes_project 2 31993840 32014717 - MGP_AJ_P0054365 Fbxw2 protein_coding protein_coding MGP_AJ_T0054366.1 MGP_AJ_G0025619.1 mouse_genomes_project 2 31993840 32014558 - MGP_AJ_P0054366 Fbxw2 protein_coding protein_coding MGP_AJ_T0054367.1 MGP_AJ_G0025619.1 mouse_genomes_project 2 31994752 32014688 - MGP_AJ_P0054367 Fbxw2 protein_coding protein_coding MGP_AJ_T0054368.1 MGP_AJ_G0025619.1 mouse_genomes_project 2 31995777 31997162 - Fbxw2 protein_coding processed_transcript MGP_AJ_T0054369.1 MGP_AJ_G0025619.1 mouse_genomes_project 2 32000336 32014798 - Fbxw2 protein_coding processed_transcript MGP_AJ_T0054370.1 MGP_AJ_G0025619.1 mouse_genomes_project 2 32001235 32014654 - Fbxw2 protein_coding processed_transcript MGP_AJ_T0054371.1 MGP_AJ_G0025619.1 mouse_genomes_project 2 32003765 32014704 - Fbxw2 protein_coding processed_transcript MGP_AJ_T0054372.1 MGP_AJ_G0025619.1 mouse_genomes_project 2 32010289 32014694 - Fbxw2 protein_coding retained_intron MGP_AJ_T0054373.1 MGP_AJ_G0025619.1 mouse_genomes_project 2 32011090 32014509 - Fbxw2 protein_coding processed_transcript MGP_AJ_T0054374.1 MGP_AJ_G0025619.1 mouse_genomes_project 2 32013749 32014702 - Fbxw2 protein_coding processed_transcript MGP_AJ_T0055924.1 MGP_AJ_G0026054.1 mouse_genomes_project 2 86947156 86948092 - MGP_AJ_P0055924 Olfr1232 protein_coding protein_coding MGP_AJ_T0053659.1 MGP_AJ_G0025519.1 mouse_genomes_project 2 26831637 26858332 - MGP_AJ_P0053659 Trub2 protein_coding protein_coding MGP_AJ_T0053663.1 MGP_AJ_G0025519.1 mouse_genomes_project 2 26845580 26858344 - MGP_AJ_P0053663 Trub2 protein_coding nonsense_mediated_decay MGP_AJ_T0053664.1 MGP_AJ_G0025519.1 mouse_genomes_project 2 26847006 26859186 - MGP_AJ_P0053664 Trub2 protein_coding protein_coding MGP_AJ_T0053665.1 MGP_AJ_G0025519.1 mouse_genomes_project 2 26848389 26858318 - MGP_AJ_P0053665 Trub2 protein_coding nonsense_mediated_decay MGP_AJ_T0053666.1 MGP_AJ_G0025519.1 mouse_genomes_project 2 26848458 26858306 - MGP_AJ_P0053666 Trub2 protein_coding protein_coding MGP_AJ_T0053667.1 MGP_AJ_G0025519.1 mouse_genomes_project 2 26849295 26858355 - MGP_AJ_P0053667 Trub2 protein_coding nonsense_mediated_decay MGP_AJ_T0053668.1 MGP_AJ_G0025519.1 mouse_genomes_project 2 26849454 26853026 - Trub2 protein_coding retained_intron MGP_AJ_T0053669.1 MGP_AJ_G0025519.1 mouse_genomes_project 2 26849911 26852880 - Trub2 protein_coding retained_intron MGP_AJ_T0053670.1 MGP_AJ_G0025519.1 mouse_genomes_project 2 26853902 26858314 - Trub2 protein_coding retained_intron MGP_AJ_T0053671.1 MGP_AJ_G0025519.1 mouse_genomes_project 2 26855603 26858317 - Trub2 protein_coding retained_intron MGP_AJ_T0058420.1 MGP_AJ_G0026655.1 mouse_genomes_project 2 151529753 151543455 - MGP_AJ_P0058420 Plagl2 protein_coding protein_coding MGP_AJ_T0058421.1 MGP_AJ_G0026655.1 mouse_genomes_project 2 151529766 151539900 - MGP_AJ_P0058421 Plagl2 protein_coding protein_coding MGP_AJ_T0013778.1 MGP_AJ_G0011873.1 mouse_genomes_project 2 137018120 137018434 - processed_pseudogene processed_pseudogene MGP_AJ_T0017872.1 MGP_AJ_G0015449.1 mouse_genomes_project 2 129345706 129346997 + Gm14233 processed_transcript processed_transcript MGP_AJ_T0007255.1 MGP_AJ_G0005946.1 mouse_genomes_project 2 75667611 75733364 + Gm14461 lincRNA lincRNA MGP_AJ_T0007256.1 MGP_AJ_G0005946.1 mouse_genomes_project 2 75732825 75733134 + Gm14461 lincRNA lincRNA MGP_AJ_T0017776.1 MGP_AJ_G0015398.1 mouse_genomes_project 2 63678343 63690399 + Gm13630 processed_transcript processed_transcript MGP_AJ_T0003894.1 MGP_AJ_G0003479.1 mouse_genomes_project 2 3184625 3311604 + A230108P19Rik antisense antisense MGP_AJ_T0055830.1 MGP_AJ_G0025977.1 mouse_genomes_project 2 84944812 84945769 + MGP_AJ_P0055830 Olfr1124 protein_coding protein_coding MGP_AJ_T0056452.1 MGP_AJ_G0026165.1 mouse_genomes_project 2 101084557 101114958 - MGP_AJ_P0056452 Cat protein_coding protein_coding MGP_AJ_T0056453.1 MGP_AJ_G0026165.1 mouse_genomes_project 2 101085302 101114923 - MGP_AJ_P0056453 Cat protein_coding protein_coding MGP_AJ_T0013489.1 MGP_AJ_G0011584.1 mouse_genomes_project 2 32536343 32536898 + processed_pseudogene processed_pseudogene MGP_AJ_T0054591.1 MGP_AJ_G0025682.1 mouse_genomes_project 2 35952067 36159559 - MGP_AJ_P0054591 Nr6a1 protein_coding protein_coding MGP_AJ_T0054592.1 MGP_AJ_G0025682.1 mouse_genomes_project 2 35952071 36158108 - MGP_AJ_P0054592 Nr6a1 protein_coding protein_coding MGP_AJ_T0054593.1 MGP_AJ_G0025682.1 mouse_genomes_project 2 35952071 36014843 - MGP_AJ_P0054593 Nr6a1 protein_coding protein_coding MGP_AJ_T0054594.1 MGP_AJ_G0025682.1 mouse_genomes_project 2 35966294 35969162 - Nr6a1 protein_coding processed_transcript MGP_AJ_T0054595.1 MGP_AJ_G0025682.1 mouse_genomes_project 2 35967424 35971655 - Nr6a1 protein_coding processed_transcript MGP_AJ_T0054596.1 MGP_AJ_G0025682.1 mouse_genomes_project 2 35967832 36014848 - MGP_AJ_P0054596 Nr6a1 protein_coding protein_coding MGP_AJ_T0054597.1 MGP_AJ_G0025682.1 mouse_genomes_project 2 35969121 36015439 - Nr6a1 protein_coding processed_transcript MGP_AJ_T0054598.1 MGP_AJ_G0025682.1 mouse_genomes_project 2 35969240 36158166 - MGP_AJ_P0054598 Nr6a1 protein_coding protein_coding MGP_AJ_T0054599.1 MGP_AJ_G0025682.1 mouse_genomes_project 2 35971138 36014797 - Nr6a1 protein_coding processed_transcript MGP_AJ_T0054600.1 MGP_AJ_G0025682.1 mouse_genomes_project 2 35971654 35993263 - Nr6a1 protein_coding retained_intron MGP_AJ_T0054601.1 MGP_AJ_G0025682.1 mouse_genomes_project 2 36012260 36014797 - Nr6a1 protein_coding processed_transcript MGP_AJ_T0058184.1 MGP_AJ_G0026581.1 mouse_genomes_project 2 146935419 146945977 + MGP_AJ_P0058184 Cst13 protein_coding protein_coding MGP_AJ_T0013717.1 MGP_AJ_G0011812.1 mouse_genomes_project 2 109239828 109257419 + processed_pseudogene processed_pseudogene MGP_AJ_T0001062.1 MGP_AJ_G0000993.1 mouse_genomes_project 2 32475699 32477320 + TEC TEC MGP_AJ_T0057850.1 MGP_AJ_G0026499.1 mouse_genomes_project 2 129962258 129996944 + MGP_AJ_P0057850 Prn protein_coding protein_coding MGP_AJ_T0057851.1 MGP_AJ_G0026499.1 mouse_genomes_project 2 129962258 129996944 + MGP_AJ_P0057851 Prn protein_coding protein_coding MGP_AJ_T0007210.1 MGP_AJ_G0005908.1 mouse_genomes_project 2 48987869 49060163 - Gm13490 lincRNA lincRNA MGP_AJ_T0055198.1 MGP_AJ_G0025786.1 mouse_genomes_project 2 67200017 67330115 + MGP_AJ_P0055198 Ubr3 protein_coding protein_coding MGP_AJ_T0055199.1 MGP_AJ_G0025786.1 mouse_genomes_project 2 67200017 67330115 + MGP_AJ_P0055199 Ubr3 protein_coding protein_coding MGP_AJ_T0055200.1 MGP_AJ_G0025786.1 mouse_genomes_project 2 67200074 67244865 + MGP_AJ_P0055200 Ubr3 protein_coding protein_coding MGP_AJ_T0055201.1 MGP_AJ_G0025786.1 mouse_genomes_project 2 67238385 67251506 + Ubr3 protein_coding processed_transcript MGP_AJ_T0055202.1 MGP_AJ_G0025786.1 mouse_genomes_project 2 67294813 67315220 + MGP_AJ_P0055202 Ubr3 protein_coding protein_coding MGP_AJ_T0055203.1 MGP_AJ_G0025786.1 mouse_genomes_project 2 67299769 67328647 + Ubr3 protein_coding processed_transcript MGP_AJ_T0055204.1 MGP_AJ_G0025786.1 mouse_genomes_project 2 67306536 67315358 + Ubr3 protein_coding processed_transcript MGP_AJ_T0055205.1 MGP_AJ_G0025786.1 mouse_genomes_project 2 67315038 67322550 + Ubr3 protein_coding processed_transcript MGP_AJ_T0055206.1 MGP_AJ_G0025786.1 mouse_genomes_project 2 67326229 67327288 + Ubr3 protein_coding processed_transcript MGP_AJ_T0055207.1 MGP_AJ_G0025786.1 mouse_genomes_project 2 67326613 67328322 + Ubr3 protein_coding processed_transcript MGP_AJ_T0007383.1 MGP_AJ_G0006049.1 mouse_genomes_project 2 159714272 159754672 + Gm14243 lincRNA lincRNA MGP_AJ_T0013639.1 MGP_AJ_G0011734.1 mouse_genomes_project 2 83732772 83735701 - processed_pseudogene processed_pseudogene MGP_AJ_T0055713.1 MGP_AJ_G0025890.1 mouse_genomes_project 2 82321463 82322719 + MGP_AJ_P0055713 Slc43a3 protein_coding protein_coding MGP_AJ_T0055714.1 MGP_AJ_G0025890.1 mouse_genomes_project 2 82321501 82323217 + MGP_AJ_P0055714 Slc43a3 protein_coding protein_coding MGP_AJ_T0055715.1 MGP_AJ_G0025890.1 mouse_genomes_project 2 82321530 82329444 + MGP_AJ_P0055715 Slc43a3 protein_coding protein_coding MGP_AJ_T0055716.1 MGP_AJ_G0025890.1 mouse_genomes_project 2 82321548 82343366 + MGP_AJ_P0055716 Slc43a3 protein_coding protein_coding MGP_AJ_T0055717.1 MGP_AJ_G0025890.1 mouse_genomes_project 2 82321573 82322566 + Slc43a3 protein_coding processed_transcript MGP_AJ_T0055718.1 MGP_AJ_G0025890.1 mouse_genomes_project 2 82321774 82332992 + Slc43a3 protein_coding retained_intron MGP_AJ_T0099760.1 MGP_AJ_G0037726.1 mouse_genomes_project 2 41703149 41703258 + Gm22867 snRNA snRNA MGP_AJ_T0056747.1 MGP_AJ_G0026263.1 mouse_genomes_project 2 111859797 111933819 - MGP_AJ_P0056747 Aqr protein_coding protein_coding MGP_AJ_T0056748.1 MGP_AJ_G0026263.1 mouse_genomes_project 2 111863789 111933757 - MGP_AJ_P0056748 Aqr protein_coding protein_coding MGP_AJ_T0056749.1 MGP_AJ_G0026263.1 mouse_genomes_project 2 111870753 111877815 - Aqr protein_coding processed_transcript MGP_AJ_T0056750.1 MGP_AJ_G0026263.1 mouse_genomes_project 2 111891614 111899766 - Aqr protein_coding processed_transcript MGP_AJ_T0056751.1 MGP_AJ_G0026263.1 mouse_genomes_project 2 111891995 111933726 - Aqr protein_coding processed_transcript MGP_AJ_T0056752.1 MGP_AJ_G0026263.1 mouse_genomes_project 2 111911326 111933818 - Aqr protein_coding processed_transcript MGP_AJ_T0056753.1 MGP_AJ_G0026263.1 mouse_genomes_project 2 111917099 111933818 - Aqr protein_coding processed_transcript MGP_AJ_T0056754.1 MGP_AJ_G0026263.1 mouse_genomes_project 2 111928531 111933896 - Aqr protein_coding processed_transcript MGP_AJ_T0013426.1 MGP_AJ_G0011521.1 mouse_genomes_project 2 8640977 8642241 - processed_pseudogene processed_pseudogene MGP_AJ_T0010482.1 MGP_AJ_G0008604.1 mouse_genomes_project 2 167714864 167714985 + Gm26469 miRNA miRNA MGP_AJ_T0013565.1 MGP_AJ_G0011660.1 mouse_genomes_project 2 57370893 57371307 - processed_pseudogene processed_pseudogene MGP_AJ_T0056672.1 MGP_AJ_G0026220.1 mouse_genomes_project 2 108966520 108967273 + MGP_AJ_P0056672 protein_coding protein_coding MGP_AJ_T0013847.1 MGP_AJ_G0011942.1 mouse_genomes_project 2 155385308 155385545 - processed_pseudogene processed_pseudogene MGP_AJ_T0054396.1 MGP_AJ_G0025624.1 mouse_genomes_project 2 32173811 32258165 - MGP_AJ_P0054396 protein_coding protein_coding MGP_AJ_T0054397.1 MGP_AJ_G0025624.1 mouse_genomes_project 2 32174183 32211186 - MGP_AJ_P0054397 protein_coding protein_coding MGP_AJ_T0054398.1 MGP_AJ_G0025624.1 mouse_genomes_project 2 32182820 32184926 - protein_coding processed_transcript MGP_AJ_T0054399.1 MGP_AJ_G0025624.1 mouse_genomes_project 2 32182914 32192413 - protein_coding retained_intron MGP_AJ_T0054400.1 MGP_AJ_G0025624.1 mouse_genomes_project 2 32186557 32197889 - protein_coding processed_transcript MGP_AJ_T0059938.1 MGP_AJ_G0026994.1 mouse_genomes_project 2 180420398 180433227 - MGP_AJ_P0059938 Uckl1 protein_coding protein_coding MGP_AJ_T0059939.1 MGP_AJ_G0026994.1 mouse_genomes_project 2 180420402 180421641 - MGP_AJ_P0059939 Uckl1 protein_coding protein_coding MGP_AJ_T0059940.1 MGP_AJ_G0026994.1 mouse_genomes_project 2 180420405 180421051 - Uckl1 protein_coding retained_intron MGP_AJ_T0059941.1 MGP_AJ_G0026994.1 mouse_genomes_project 2 180420416 180433231 - MGP_AJ_P0059941 Uckl1 protein_coding nonsense_mediated_decay MGP_AJ_T0059942.1 MGP_AJ_G0026994.1 mouse_genomes_project 2 180420418 180421135 - Uckl1 protein_coding retained_intron MGP_AJ_T0059943.1 MGP_AJ_G0026994.1 mouse_genomes_project 2 180420484 180423793 - Uckl1 protein_coding retained_intron MGP_AJ_T0059944.1 MGP_AJ_G0026994.1 mouse_genomes_project 2 180420867 180424380 - MGP_AJ_P0059944 Uckl1 protein_coding nonsense_mediated_decay MGP_AJ_T0059945.1 MGP_AJ_G0026994.1 mouse_genomes_project 2 180420906 180424380 - Uckl1 protein_coding retained_intron MGP_AJ_T0059946.1 MGP_AJ_G0026994.1 mouse_genomes_project 2 180421017 180422628 - Uckl1 protein_coding retained_intron MGP_AJ_T0059947.1 MGP_AJ_G0026994.1 mouse_genomes_project 2 180421103 180424389 - Uckl1 protein_coding retained_intron MGP_AJ_T0059948.1 MGP_AJ_G0026994.1 mouse_genomes_project 2 180421259 180425729 - Uckl1 protein_coding processed_transcript MGP_AJ_T0059949.1 MGP_AJ_G0026994.1 mouse_genomes_project 2 180421614 180423411 - Uckl1 protein_coding processed_transcript MGP_AJ_T0059950.1 MGP_AJ_G0026994.1 mouse_genomes_project 2 180423577 180425753 - Uckl1 protein_coding retained_intron MGP_AJ_T0059951.1 MGP_AJ_G0026994.1 mouse_genomes_project 2 180424505 180436150 - MGP_AJ_P0059951 Uckl1 protein_coding protein_coding MGP_AJ_T0059952.1 MGP_AJ_G0026994.1 mouse_genomes_project 2 180424550 180426087 - Uckl1 protein_coding retained_intron MGP_AJ_T0059953.1 MGP_AJ_G0026994.1 mouse_genomes_project 2 180424561 180430205 - MGP_AJ_P0059953 Uckl1 protein_coding protein_coding MGP_AJ_T0059954.1 MGP_AJ_G0026994.1 mouse_genomes_project 2 180425537 180433237 - Uckl1 protein_coding retained_intron MGP_AJ_T0053778.1 MGP_AJ_G0025534.1 mouse_genomes_project 2 27255954 27258531 + MGP_AJ_P0053778 Endog protein_coding protein_coding MGP_AJ_T0004191.1 MGP_AJ_G0003696.1 mouse_genomes_project 2 179173325 179181200 + Gata5os antisense antisense MGP_AJ_T0059747.1 MGP_AJ_G0026960.1 mouse_genomes_project 2 179298357 179317072 + MGP_AJ_P0059747 Slco4a1 protein_coding protein_coding MGP_AJ_T0059748.1 MGP_AJ_G0026960.1 mouse_genomes_project 2 179298446 179317050 + Slco4a1 protein_coding processed_transcript MGP_AJ_T0059749.1 MGP_AJ_G0026960.1 mouse_genomes_project 2 179303107 179317072 + MGP_AJ_P0059749 Slco4a1 protein_coding protein_coding MGP_AJ_T0059750.1 MGP_AJ_G0026960.1 mouse_genomes_project 2 179309199 179310523 + Slco4a1 protein_coding retained_intron MGP_AJ_T0059751.1 MGP_AJ_G0026960.1 mouse_genomes_project 2 179314616 179317057 + Slco4a1 protein_coding retained_intron MGP_AJ_T0059306.1 MGP_AJ_G0026857.1 mouse_genomes_project 2 163838281 163870635 - MGP_AJ_P0059306 Elmo2 protein_coding protein_coding MGP_AJ_T0059307.1 MGP_AJ_G0026857.1 mouse_genomes_project 2 163839405 163876288 - MGP_AJ_P0059307 Elmo2 protein_coding protein_coding MGP_AJ_T0059308.1 MGP_AJ_G0026857.1 mouse_genomes_project 2 163839405 163846803 - MGP_AJ_P0059308 Elmo2 protein_coding protein_coding MGP_AJ_T0059309.1 MGP_AJ_G0026857.1 mouse_genomes_project 2 163839405 163876288 - MGP_AJ_P0059309 Elmo2 protein_coding protein_coding MGP_AJ_T0059310.1 MGP_AJ_G0026857.1 mouse_genomes_project 2 163841362 163876288 - MGP_AJ_P0059310 Elmo2 protein_coding protein_coding MGP_AJ_T0059311.1 MGP_AJ_G0026857.1 mouse_genomes_project 2 163841367 163866724 - MGP_AJ_P0059311 Elmo2 protein_coding protein_coding MGP_AJ_T0059312.1 MGP_AJ_G0026857.1 mouse_genomes_project 2 163848104 163864127 - Elmo2 protein_coding processed_transcript MGP_AJ_T0059313.1 MGP_AJ_G0026857.1 mouse_genomes_project 2 163848493 163861566 - MGP_AJ_P0059313 Elmo2 protein_coding protein_coding MGP_AJ_T0059314.1 MGP_AJ_G0026857.1 mouse_genomes_project 2 163854509 163861456 - Elmo2 protein_coding retained_intron MGP_AJ_T0059315.1 MGP_AJ_G0026857.1 mouse_genomes_project 2 163858726 163866172 - MGP_AJ_P0059315 Elmo2 protein_coding nonsense_mediated_decay MGP_AJ_T0059316.1 MGP_AJ_G0026857.1 mouse_genomes_project 2 163861493 163866396 - MGP_AJ_P0059316 Elmo2 protein_coding protein_coding MGP_AJ_T0059317.1 MGP_AJ_G0026857.1 mouse_genomes_project 2 163865492 163876288 - MGP_AJ_P0059317 Elmo2 protein_coding protein_coding MGP_AJ_T0057966.1 MGP_AJ_G0026523.1 mouse_genomes_project 2 134808183 134877650 + MGP_AJ_P0057966 Snap25 protein_coding protein_coding MGP_AJ_T0057967.1 MGP_AJ_G0026523.1 mouse_genomes_project 2 134808184 134857936 + Snap25 protein_coding retained_intron MGP_AJ_T0057968.1 MGP_AJ_G0026523.1 mouse_genomes_project 2 134808208 134876573 + MGP_AJ_P0057968 Snap25 protein_coding protein_coding MGP_AJ_T0004053.1 MGP_AJ_G0003594.1 mouse_genomes_project 2 107691892 107710989 - Ccdc34os antisense antisense MGP_AJ_T0004054.1 MGP_AJ_G0003594.1 mouse_genomes_project 2 107691893 107710992 - Ccdc34os antisense antisense MGP_AJ_T0001029.1 MGP_AJ_G0000960.1 mouse_genomes_project 2 8412760 8413881 - TEC TEC MGP_AJ_T0017864.1 MGP_AJ_G0015444.1 mouse_genomes_project 2 127066770 127071511 - Gm14022 processed_transcript processed_transcript MGP_AJ_T0003922.1 MGP_AJ_G0003502.1 mouse_genomes_project 2 22709775 22713642 - A230005M16Rik antisense antisense MGP_AJ_T0003923.1 MGP_AJ_G0003502.1 mouse_genomes_project 2 22710432 22712191 - A230005M16Rik antisense antisense MGP_AJ_T0057635.1 MGP_AJ_G0026454.1 mouse_genomes_project 2 127595551 127611709 + Sirpa protein_coding processed_transcript MGP_AJ_T0057636.1 MGP_AJ_G0026454.1 mouse_genomes_project 2 127595555 127611712 + Sirpa protein_coding processed_transcript MGP_AJ_T0057637.1 MGP_AJ_G0026454.1 mouse_genomes_project 2 127595555 127622218 + MGP_AJ_P0057637 Sirpa protein_coding protein_coding MGP_AJ_T0057638.1 MGP_AJ_G0026454.1 mouse_genomes_project 2 127595555 127638180 + MGP_AJ_P0057638 Sirpa protein_coding protein_coding MGP_AJ_T0057639.1 MGP_AJ_G0026454.1 mouse_genomes_project 2 127595555 127638180 + MGP_AJ_P0057639 Sirpa protein_coding protein_coding MGP_AJ_T0057640.1 MGP_AJ_G0026454.1 mouse_genomes_project 2 127595581 127611901 + Sirpa protein_coding processed_transcript MGP_AJ_T0057641.1 MGP_AJ_G0026454.1 mouse_genomes_project 2 127595630 127638188 + MGP_AJ_P0057641 Sirpa protein_coding protein_coding MGP_AJ_T0057642.1 MGP_AJ_G0026454.1 mouse_genomes_project 2 127595911 127638180 + MGP_AJ_P0057642 Sirpa protein_coding protein_coding MGP_AJ_T0057643.1 MGP_AJ_G0026454.1 mouse_genomes_project 2 127595921 127638188 + MGP_AJ_P0057643 Sirpa protein_coding protein_coding MGP_AJ_T0057644.1 MGP_AJ_G0026454.1 mouse_genomes_project 2 127596271 127638188 + MGP_AJ_P0057644 Sirpa protein_coding protein_coding MGP_AJ_T0057645.1 MGP_AJ_G0026454.1 mouse_genomes_project 2 127596278 127636549 + Sirpa protein_coding processed_transcript MGP_AJ_T0057646.1 MGP_AJ_G0026454.1 mouse_genomes_project 2 127596284 127636257 + MGP_AJ_P0057646 Sirpa protein_coding protein_coding MGP_AJ_T0057647.1 MGP_AJ_G0026454.1 mouse_genomes_project 2 127596329 127636144 + MGP_AJ_P0057647 Sirpa protein_coding protein_coding MGP_AJ_T0057648.1 MGP_AJ_G0026454.1 mouse_genomes_project 2 127626645 127634004 + Sirpa protein_coding retained_intron MGP_AJ_T0010341.1 MGP_AJ_G0008463.1 mouse_genomes_project 2 7494691 7494772 + Mir669d-2 miRNA miRNA MGP_AJ_T0054213.1 MGP_AJ_G0025596.1 mouse_genomes_project 2 29874874 29911100 + MGP_AJ_P0054213 Sh2d3c protein_coding protein_coding MGP_AJ_T0054214.1 MGP_AJ_G0025596.1 mouse_genomes_project 2 29882733 29900938 + Sh2d3c protein_coding processed_transcript MGP_AJ_T0054215.1 MGP_AJ_G0025596.1 mouse_genomes_project 2 29882733 29911618 + MGP_AJ_P0054215 Sh2d3c protein_coding protein_coding MGP_AJ_T0054218.1 MGP_AJ_G0025596.1 mouse_genomes_project 2 29890305 29897415 + Sh2d3c protein_coding processed_transcript MGP_AJ_T0054219.1 MGP_AJ_G0025596.1 mouse_genomes_project 2 29897583 29903158 + Sh2d3c protein_coding processed_transcript MGP_AJ_T0054220.1 MGP_AJ_G0025596.1 mouse_genomes_project 2 29897585 29899770 + Sh2d3c protein_coding processed_transcript MGP_AJ_T0054221.1 MGP_AJ_G0025596.1 mouse_genomes_project 2 29897680 29911108 + MGP_AJ_P0054221 Sh2d3c protein_coding unknown_likely_coding MGP_AJ_T0010411.1 MGP_AJ_G0008533.1 mouse_genomes_project 2 42300410 42300488 - Mir5129 miRNA miRNA MGP_AJ_T0007314.1 MGP_AJ_G0005992.1 mouse_genomes_project 2 115179130 115182466 - Gm13982 lincRNA lincRNA MGP_AJ_T0007252.1 MGP_AJ_G0005944.1 mouse_genomes_project 2 75281137 75283447 + Gm13661 lincRNA lincRNA MGP_AJ_T0055324.1 MGP_AJ_G0025807.1 mouse_genomes_project 2 69621193 69778236 + MGP_AJ_P0055324 Zak protein_coding protein_coding MGP_AJ_T0055325.1 MGP_AJ_G0025807.1 mouse_genomes_project 2 69621284 69743110 + MGP_AJ_P0055325 Zak protein_coding protein_coding MGP_AJ_T0055326.1 MGP_AJ_G0025807.1 mouse_genomes_project 2 69621320 69734850 + Zak protein_coding retained_intron MGP_AJ_T0055327.1 MGP_AJ_G0025807.1 mouse_genomes_project 2 69621333 69725477 + Zak protein_coding retained_intron MGP_AJ_T0055328.1 MGP_AJ_G0025807.1 mouse_genomes_project 2 69621350 69700454 + Zak protein_coding retained_intron MGP_AJ_T0055329.1 MGP_AJ_G0025807.1 mouse_genomes_project 2 69633710 69691233 + MGP_AJ_P0055329 Zak protein_coding protein_coding MGP_AJ_T0001054.1 MGP_AJ_G0000985.1 mouse_genomes_project 2 12609513 12611255 + TEC TEC MGP_AJ_T0058579.1 MGP_AJ_G0026699.1 mouse_genomes_project 2 153830137 153835168 + MGP_AJ_P0058579 Trp53inp2 protein_coding protein_coding MGP_AJ_T0058580.1 MGP_AJ_G0026699.1 mouse_genomes_project 2 153830892 153838961 + MGP_AJ_P0058580 Trp53inp2 protein_coding protein_coding MGP_AJ_T0058581.1 MGP_AJ_G0026699.1 mouse_genomes_project 2 153830918 153835868 + MGP_AJ_P0058581 Trp53inp2 protein_coding protein_coding MGP_AJ_T0058582.1 MGP_AJ_G0026699.1 mouse_genomes_project 2 153830938 153835067 + Trp53inp2 protein_coding retained_intron MGP_AJ_T0058583.1 MGP_AJ_G0026699.1 mouse_genomes_project 2 153831280 153835079 + MGP_AJ_P0058583 Trp53inp2 protein_coding protein_coding MGP_AJ_T0099804.1 MGP_AJ_G0037770.1 mouse_genomes_project 2 180277980 180278083 - Gm22708 snRNA snRNA MGP_AJ_T0053247.1 MGP_AJ_G0025439.1 mouse_genomes_project 2 22645722 22648820 + MGP_AJ_P0053247 Lcn8 protein_coding protein_coding MGP_AJ_T0054440.1 MGP_AJ_G0025631.1 mouse_genomes_project 2 32572027 32594035 - MGP_AJ_P0054440 4930402F06Rik protein_coding protein_coding MGP_AJ_T0054441.1 MGP_AJ_G0025631.1 mouse_genomes_project 2 32572047 32593917 - MGP_AJ_P0054441 4930402F06Rik protein_coding protein_coding MGP_AJ_T0052357.1 MGP_AJ_G0025289.1 mouse_genomes_project 2 564068 736329 + MGP_AJ_P0052357 Fam107b protein_coding protein_coding MGP_AJ_T0052358.1 MGP_AJ_G0025289.1 mouse_genomes_project 2 667955 738684 + MGP_AJ_P0052358 Fam107b protein_coding protein_coding MGP_AJ_T0052359.1 MGP_AJ_G0025289.1 mouse_genomes_project 2 667975 736463 + MGP_AJ_P0052359 Fam107b protein_coding nonsense_mediated_decay MGP_AJ_T0052360.1 MGP_AJ_G0025289.1 mouse_genomes_project 2 727253 729517 + MGP_AJ_P0052360 Fam107b protein_coding protein_coding MGP_AJ_T0052361.1 MGP_AJ_G0025289.1 mouse_genomes_project 2 727279 738682 + MGP_AJ_P0052361 Fam107b protein_coding protein_coding MGP_AJ_T0052362.1 MGP_AJ_G0025289.1 mouse_genomes_project 2 730491 736167 + MGP_AJ_P0052362 Fam107b protein_coding protein_coding MGP_AJ_T0007188.1 MGP_AJ_G0005890.1 mouse_genomes_project 2 32417841 32419561 + Gm13605 lincRNA lincRNA MGP_AJ_T0055217.1 MGP_AJ_G0025790.1 mouse_genomes_project 2 67857682 67871568 + MGP_AJ_P0055217 Gad1 protein_coding protein_coding MGP_AJ_T0055218.1 MGP_AJ_G0025790.1 mouse_genomes_project 2 67866380 67907377 + MGP_AJ_P0055218 Gad1 protein_coding protein_coding MGP_AJ_T0055219.1 MGP_AJ_G0025790.1 mouse_genomes_project 2 67866380 67891434 + MGP_AJ_P0055219 Gad1 protein_coding nonsense_mediated_decay MGP_AJ_T0055220.1 MGP_AJ_G0025790.1 mouse_genomes_project 2 67866501 67881443 + Gad1 protein_coding retained_intron MGP_AJ_T0055221.1 MGP_AJ_G0025790.1 mouse_genomes_project 2 67866534 67888914 + MGP_AJ_P0055221 Gad1 protein_coding protein_coding MGP_AJ_T0055222.1 MGP_AJ_G0025790.1 mouse_genomes_project 2 67867236 67889435 + MGP_AJ_P0055222 Gad1 protein_coding protein_coding MGP_AJ_T0055223.1 MGP_AJ_G0025790.1 mouse_genomes_project 2 67867779 67890260 + MGP_AJ_P0055223 Gad1 protein_coding protein_coding MGP_AJ_T0055224.1 MGP_AJ_G0025790.1 mouse_genomes_project 2 67870713 67907375 + Gad1 protein_coding processed_transcript MGP_AJ_T0055710.1 MGP_AJ_G0025889.1 mouse_genomes_project 2 82266175 82280952 - MGP_AJ_P0055710 Rtn4rl2 protein_coding protein_coding MGP_AJ_T0055711.1 MGP_AJ_G0025889.1 mouse_genomes_project 2 82266197 82280934 - MGP_AJ_P0055711 Rtn4rl2 protein_coding protein_coding MGP_AJ_T0055712.1 MGP_AJ_G0025889.1 mouse_genomes_project 2 82274767 82280718 - Rtn4rl2 protein_coding processed_transcript MGP_AJ_T0013882.1 MGP_AJ_G0011977.1 mouse_genomes_project 2 173334180 173334753 + processed_pseudogene processed_pseudogene MGP_AJ_T0058147.1 MGP_AJ_G0026565.1 mouse_genomes_project 2 145118525 145184785 + MGP_AJ_P0058147 Xrn2 protein_coding protein_coding MGP_AJ_T0058148.1 MGP_AJ_G0026565.1 mouse_genomes_project 2 145135835 145144476 + Xrn2 protein_coding retained_intron MGP_AJ_T0058149.1 MGP_AJ_G0026565.1 mouse_genomes_project 2 145148749 145153997 + Xrn2 protein_coding retained_intron MGP_AJ_T0058150.1 MGP_AJ_G0026565.1 mouse_genomes_project 2 145167590 145175054 + Xrn2 protein_coding retained_intron MGP_AJ_T0053586.1 MGP_AJ_G0025506.1 mouse_genomes_project 2 25694204 25726161 + MGP_AJ_P0053586 Tsc1 protein_coding nonsense_mediated_decay MGP_AJ_T0053587.1 MGP_AJ_G0025506.1 mouse_genomes_project 2 25694213 25744655 + MGP_AJ_P0053587 Tsc1 protein_coding protein_coding MGP_AJ_T0053588.1 MGP_AJ_G0025506.1 mouse_genomes_project 2 25694217 25742036 + MGP_AJ_P0053588 Tsc1 protein_coding nonsense_mediated_decay MGP_AJ_T0053589.1 MGP_AJ_G0025506.1 mouse_genomes_project 2 25694217 25744655 + MGP_AJ_P0053589 Tsc1 protein_coding protein_coding MGP_AJ_T0053590.1 MGP_AJ_G0025506.1 mouse_genomes_project 2 25694219 25744655 + MGP_AJ_P0053590 Tsc1 protein_coding protein_coding MGP_AJ_T0053591.1 MGP_AJ_G0025506.1 mouse_genomes_project 2 25694226 25727407 + Tsc1 protein_coding retained_intron MGP_AJ_T0053592.1 MGP_AJ_G0025506.1 mouse_genomes_project 2 25694230 25721613 + Tsc1 protein_coding retained_intron MGP_AJ_T0053593.1 MGP_AJ_G0025506.1 mouse_genomes_project 2 25711810 25744655 + MGP_AJ_P0053593 Tsc1 protein_coding protein_coding MGP_AJ_T0053594.1 MGP_AJ_G0025506.1 mouse_genomes_project 2 25717045 25719619 + Tsc1 protein_coding retained_intron MGP_AJ_T0053595.1 MGP_AJ_G0025506.1 mouse_genomes_project 2 25724668 25726841 + Tsc1 protein_coding retained_intron MGP_AJ_T0053596.1 MGP_AJ_G0025506.1 mouse_genomes_project 2 25725931 25726983 + Tsc1 protein_coding retained_intron MGP_AJ_T0013577.1 MGP_AJ_G0011672.1 mouse_genomes_project 2 63421320 63421542 - processed_pseudogene processed_pseudogene MGP_AJ_T0055850.1 MGP_AJ_G0025988.1 mouse_genomes_project 2 85230635 85231568 - MGP_AJ_P0055850 Olfr1135 protein_coding protein_coding MGP_AJ_T0052912.1 MGP_AJ_G0025384.1 mouse_genomes_project 2 21236685 21239309 + MGP_AJ_P0052912 Il1f10 protein_coding protein_coding MGP_AJ_T0058715.1 MGP_AJ_G0026722.1 mouse_genomes_project 2 154542916 154582937 - MGP_AJ_P0058715 Gm28036 protein_coding nonsense_mediated_decay MGP_AJ_T0058716.1 MGP_AJ_G0026722.1 mouse_genomes_project 2 154542916 154569199 - MGP_AJ_P0058716 Gm28036 protein_coding nonsense_mediated_decay MGP_AJ_T0058731.1 MGP_AJ_G0026722.1 mouse_genomes_project 2 154549998 154594930 - MGP_AJ_P0058731 Gm28036 protein_coding nonsense_mediated_decay MGP_AJ_T0058732.1 MGP_AJ_G0026722.1 mouse_genomes_project 2 154549998 154594930 - MGP_AJ_P0058732 Gm28036 protein_coding nonsense_mediated_decay MGP_AJ_T0058733.1 MGP_AJ_G0026722.1 mouse_genomes_project 2 154549998 154594930 - MGP_AJ_P0058733 Gm28036 protein_coding nonsense_mediated_decay MGP_AJ_T0058734.1 MGP_AJ_G0026722.1 mouse_genomes_project 2 154550160 154582962 - MGP_AJ_P0058734 Gm28036 protein_coding nonsense_mediated_decay MGP_AJ_T0058735.1 MGP_AJ_G0026722.1 mouse_genomes_project 2 154550166 154568042 - MGP_AJ_P0058735 Gm28036 protein_coding nonsense_mediated_decay MGP_AJ_T0058736.1 MGP_AJ_G0026722.1 mouse_genomes_project 2 154550493 154582967 - MGP_AJ_P0058736 Gm28036 protein_coding protein_coding MGP_AJ_T0053723.1 MGP_AJ_G0025527.1 mouse_genomes_project 2 27039898 27106372 + MGP_AJ_P0053723 Sptan1 protein_coding protein_coding MGP_AJ_T0053724.1 MGP_AJ_G0025527.1 mouse_genomes_project 2 27039898 27106369 + MGP_AJ_P0053724 Sptan1 protein_coding protein_coding MGP_AJ_T0053725.1 MGP_AJ_G0025527.1 mouse_genomes_project 2 27040015 27068682 + Sptan1 protein_coding retained_intron MGP_AJ_T0053726.1 MGP_AJ_G0025527.1 mouse_genomes_project 2 27040017 27041488 + Sptan1 protein_coding retained_intron MGP_AJ_T0053727.1 MGP_AJ_G0025527.1 mouse_genomes_project 2 27040018 27106372 + MGP_AJ_P0053727 Sptan1 protein_coding protein_coding MGP_AJ_T0053728.1 MGP_AJ_G0025527.1 mouse_genomes_project 2 27040018 27058381 + MGP_AJ_P0053728 Sptan1 protein_coding protein_coding MGP_AJ_T0053729.1 MGP_AJ_G0025527.1 mouse_genomes_project 2 27040018 27106366 + MGP_AJ_P0053729 Sptan1 protein_coding protein_coding MGP_AJ_T0053730.1 MGP_AJ_G0025527.1 mouse_genomes_project 2 27040021 27106372 + MGP_AJ_P0053730 Sptan1 protein_coding protein_coding MGP_AJ_T0053731.1 MGP_AJ_G0025527.1 mouse_genomes_project 2 27053122 27106105 + MGP_AJ_P0053731 Sptan1 protein_coding protein_coding MGP_AJ_T0053732.1 MGP_AJ_G0025527.1 mouse_genomes_project 2 27066600 27068675 + Sptan1 protein_coding retained_intron MGP_AJ_T0053733.1 MGP_AJ_G0025527.1 mouse_genomes_project 2 27076490 27082709 + Sptan1 protein_coding retained_intron MGP_AJ_T0053734.1 MGP_AJ_G0025527.1 mouse_genomes_project 2 27078694 27081253 + Sptan1 protein_coding retained_intron MGP_AJ_T0053735.1 MGP_AJ_G0025527.1 mouse_genomes_project 2 27096741 27099904 + Sptan1 protein_coding retained_intron MGP_AJ_T0053736.1 MGP_AJ_G0025527.1 mouse_genomes_project 2 27102484 27105438 + Sptan1 protein_coding retained_intron MGP_AJ_T0053737.1 MGP_AJ_G0025527.1 mouse_genomes_project 2 27102517 27105422 + Sptan1 protein_coding retained_intron MGP_AJ_T0053738.1 MGP_AJ_G0025527.1 mouse_genomes_project 2 27105229 27106096 + Sptan1 protein_coding retained_intron MGP_AJ_T0013625.1 MGP_AJ_G0011720.1 mouse_genomes_project 2 79568872 79569467 - processed_pseudogene processed_pseudogene MGP_AJ_T0004129.1 MGP_AJ_G0003649.1 mouse_genomes_project 2 150837453 150842559 - Gm14161 antisense antisense MGP_AJ_T0056591.1 MGP_AJ_G0026192.1 mouse_genomes_project 2 103379767 103584869 - MGP_AJ_P0056591 Elp4 protein_coding protein_coding MGP_AJ_T0056592.1 MGP_AJ_G0026192.1 mouse_genomes_project 2 103410822 103537865 - MGP_AJ_P0056592 Elp4 protein_coding protein_coding MGP_AJ_T0056593.1 MGP_AJ_G0026192.1 mouse_genomes_project 2 103473114 103495312 - Elp4 protein_coding retained_intron MGP_AJ_T0056594.1 MGP_AJ_G0026192.1 mouse_genomes_project 2 103537952 103584788 - Elp4 protein_coding processed_transcript MGP_AJ_T0010472.1 MGP_AJ_G0008594.1 mouse_genomes_project 2 157155462 157155520 + Mir3474 miRNA miRNA MGP_AJ_T0007405.1 MGP_AJ_G0006068.1 mouse_genomes_project 2 166397627 166402730 + Gm14321 lincRNA lincRNA MGP_AJ_T0007406.1 MGP_AJ_G0006068.1 mouse_genomes_project 2 166397696 166402287 + Gm14321 lincRNA lincRNA MGP_AJ_T0053886.1 MGP_AJ_G0025550.1 mouse_genomes_project 2 27893635 27902496 - 1700001O22Rik protein_coding processed_transcript MGP_AJ_T0053887.1 MGP_AJ_G0025550.1 mouse_genomes_project 2 27894167 27900571 - MGP_AJ_P0053887 1700001O22Rik protein_coding protein_coding MGP_AJ_T0053888.1 MGP_AJ_G0025550.1 mouse_genomes_project 2 27894334 27895531 - 1700001O22Rik protein_coding processed_transcript MGP_AJ_T0053889.1 MGP_AJ_G0025550.1 mouse_genomes_project 2 27894429 27902522 - 1700001O22Rik protein_coding processed_transcript MGP_AJ_T0053890.1 MGP_AJ_G0025550.1 mouse_genomes_project 2 27894432 27902505 - 1700001O22Rik protein_coding processed_transcript MGP_AJ_T0053891.1 MGP_AJ_G0025550.1 mouse_genomes_project 2 27894439 27899865 - 1700001O22Rik protein_coding processed_transcript MGP_AJ_T0053892.1 MGP_AJ_G0025550.1 mouse_genomes_project 2 27894446 27902518 - 1700001O22Rik protein_coding processed_transcript MGP_AJ_T0053893.1 MGP_AJ_G0025550.1 mouse_genomes_project 2 27894470 27902504 - 1700001O22Rik protein_coding processed_transcript MGP_AJ_T0053894.1 MGP_AJ_G0025550.1 mouse_genomes_project 2 27894523 27902505 - 1700001O22Rik protein_coding processed_transcript MGP_AJ_T0053895.1 MGP_AJ_G0025550.1 mouse_genomes_project 2 27894540 27895742 - 1700001O22Rik protein_coding processed_transcript MGP_AJ_T0053896.1 MGP_AJ_G0025550.1 mouse_genomes_project 2 27894974 27902505 - 1700001O22Rik protein_coding processed_transcript MGP_AJ_T0053897.1 MGP_AJ_G0025550.1 mouse_genomes_project 2 27895048 27902505 - 1700001O22Rik protein_coding processed_transcript MGP_AJ_T0053898.1 MGP_AJ_G0025550.1 mouse_genomes_project 2 27896120 27902484 - 1700001O22Rik protein_coding processed_transcript MGP_AJ_T0007205.1 MGP_AJ_G0005904.1 mouse_genomes_project 2 48541112 48541593 + Gm28639 lincRNA lincRNA MGP_AJ_T0102113.1 MGP_AJ_G0039875.1 mouse_genomes_project 2 103682110 103719646 + unitary_pseudogene processed_transcript MGP_AJ_T0102114.1 MGP_AJ_G0039875.1 mouse_genomes_project 2 103717243 104070761 + unitary_pseudogene unitary_pseudogene MGP_AJ_T0102115.1 MGP_AJ_G0039875.1 mouse_genomes_project 2 103904617 104070761 + unitary_pseudogene processed_transcript MGP_AJ_T0102116.1 MGP_AJ_G0039875.1 mouse_genomes_project 2 103908889 104022774 + unitary_pseudogene processed_transcript MGP_AJ_T0102117.1 MGP_AJ_G0039875.1 mouse_genomes_project 2 104068824 104086485 + unitary_pseudogene retained_intron MGP_AJ_T0004112.1 MGP_AJ_G0003635.1 mouse_genomes_project 2 141826180 141863993 - Pcsk2os2 antisense antisense MGP_AJ_T0004113.1 MGP_AJ_G0003635.1 mouse_genomes_project 2 141827761 141870760 - Pcsk2os2 antisense antisense MGP_AJ_T0102488.1 MGP_AJ_G0040230.1 mouse_genomes_project 2 84440605 84441544 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0055160.1 MGP_AJ_G0025778.1 mouse_genomes_project 2 66965193 66979287 + MGP_AJ_P0055160 Klhl41 protein_coding protein_coding MGP_AJ_T0054301.1 MGP_AJ_G0025610.1 mouse_genomes_project 2 30572861 30599177 - MGP_AJ_P0054301 Zbtb34 protein_coding protein_coding MGP_AJ_T0054302.1 MGP_AJ_G0025610.1 mouse_genomes_project 2 30572861 30596075 - MGP_AJ_P0054302 Zbtb34 protein_coding protein_coding MGP_AJ_T0054303.1 MGP_AJ_G0025610.1 mouse_genomes_project 2 30578659 30599170 - Zbtb34 protein_coding processed_transcript MGP_AJ_T0055452.1 MGP_AJ_G0025838.1 mouse_genomes_project 2 73373681 73379662 - MGP_AJ_P0055452 Ttc30a2 protein_coding protein_coding MGP_AJ_T0017814.1 MGP_AJ_G0015425.1 mouse_genomes_project 2 101434868 101440625 - 4930547E08Rik processed_transcript processed_transcript MGP_AJ_T0058934.1 MGP_AJ_G0026757.1 mouse_genomes_project 2 156779025 156805660 + MGP_AJ_P0058934 Bpi protein_coding protein_coding MGP_AJ_T0058935.1 MGP_AJ_G0026757.1 mouse_genomes_project 2 156779025 156805524 + MGP_AJ_P0058935 Bpi protein_coding protein_coding MGP_AJ_T0058936.1 MGP_AJ_G0026757.1 mouse_genomes_project 2 156779025 156805663 + MGP_AJ_P0058936 Bpi protein_coding protein_coding MGP_AJ_T0058164.1 MGP_AJ_G0026571.1 mouse_genomes_project 2 146536460 146540179 - MGP_AJ_P0058164 Thbd protein_coding protein_coding MGP_AJ_T0057032.1 MGP_AJ_G0026326.1 mouse_genomes_project 2 118169276 118217728 - MGP_AJ_P0057032 Tmem87a protein_coding protein_coding MGP_AJ_T0057033.1 MGP_AJ_G0026326.1 mouse_genomes_project 2 118169276 118217748 - MGP_AJ_P0057033 Tmem87a protein_coding protein_coding MGP_AJ_T0057034.1 MGP_AJ_G0026326.1 mouse_genomes_project 2 118169280 118217754 - Tmem87a protein_coding processed_transcript MGP_AJ_T0057035.1 MGP_AJ_G0026326.1 mouse_genomes_project 2 118169914 118217736 - Tmem87a protein_coding processed_transcript MGP_AJ_T0057036.1 MGP_AJ_G0026326.1 mouse_genomes_project 2 118177234 118217737 - MGP_AJ_P0057036 Tmem87a protein_coding protein_coding MGP_AJ_T0057037.1 MGP_AJ_G0026326.1 mouse_genomes_project 2 118194437 118217772 - Tmem87a protein_coding processed_transcript MGP_AJ_T0057038.1 MGP_AJ_G0026326.1 mouse_genomes_project 2 118194951 118217740 - Tmem87a protein_coding retained_intron MGP_AJ_T0055686.1 MGP_AJ_G0025881.1 mouse_genomes_project 2 82107821 82112705 - MGP_AJ_P0055686 Clp1 protein_coding protein_coding MGP_AJ_T0055687.1 MGP_AJ_G0025881.1 mouse_genomes_project 2 82108580 82112813 - MGP_AJ_P0055687 Clp1 protein_coding protein_coding MGP_AJ_T0055688.1 MGP_AJ_G0025881.1 mouse_genomes_project 2 82108582 82112739 - Clp1 protein_coding processed_transcript MGP_AJ_T0055772.1 MGP_AJ_G0025921.1 mouse_genomes_project 2 83398623 83400736 + MGP_AJ_P0055772 Olfr1032 protein_coding protein_coding MGP_AJ_T0001079.1 MGP_AJ_G0001009.1 mouse_genomes_project 2 36668163 36669234 - TEC TEC MGP_AJ_T0001080.1 MGP_AJ_G0001009.1 mouse_genomes_project 2 36668875 36669223 - TEC TEC MGP_AJ_T0013642.1 MGP_AJ_G0011737.1 mouse_genomes_project 2 84659244 84660706 - processed_pseudogene processed_pseudogene MGP_AJ_T0055779.1 MGP_AJ_G0025928.1 mouse_genomes_project 2 83551534 83552479 - MGP_AJ_P0055779 Olfr1044 protein_coding protein_coding MGP_AJ_T0059543.1 MGP_AJ_G0026902.1 mouse_genomes_project 2 169161173 169176296 - MGP_AJ_P0059543 Cyp24a1 protein_coding protein_coding MGP_AJ_T0058336.1 MGP_AJ_G0026627.1 mouse_genomes_project 2 150744339 150750785 - MGP_AJ_P0058336 Defb23 protein_coding protein_coding MGP_AJ_T0057596.1 MGP_AJ_G0026440.1 mouse_genomes_project 2 126824460 126860583 + MGP_AJ_P0057596 Tmem87b protein_coding protein_coding MGP_AJ_T0057597.1 MGP_AJ_G0026440.1 mouse_genomes_project 2 126824681 126860586 + MGP_AJ_P0057597 Tmem87b protein_coding unknown_likely_coding MGP_AJ_T0057598.1 MGP_AJ_G0026440.1 mouse_genomes_project 2 126824726 126858114 + MGP_AJ_P0057598 Tmem87b protein_coding protein_coding MGP_AJ_T0057599.1 MGP_AJ_G0026440.1 mouse_genomes_project 2 126837949 126856638 + Tmem87b protein_coding processed_transcript MGP_AJ_T0057600.1 MGP_AJ_G0026440.1 mouse_genomes_project 2 126847480 126856047 + Tmem87b protein_coding retained_intron MGP_AJ_T0057601.1 MGP_AJ_G0026440.1 mouse_genomes_project 2 126856281 126857733 + Tmem87b protein_coding processed_transcript MGP_AJ_T0004130.1 MGP_AJ_G0003650.1 mouse_genomes_project 2 150942994 150944442 - 1700030C14Rik antisense antisense MGP_AJ_T0013522.1 MGP_AJ_G0011617.1 mouse_genomes_project 2 43705653 43706003 - processed_pseudogene processed_pseudogene MGP_AJ_T0057147.1 MGP_AJ_G0026340.1 mouse_genomes_project 2 118856313 118895168 - MGP_AJ_P0057147 Tgm5 protein_coding protein_coding MGP_AJ_T0057148.1 MGP_AJ_G0026340.1 mouse_genomes_project 2 118883879 118895149 - Tgm5 protein_coding retained_intron MGP_AJ_T0013702.1 MGP_AJ_G0011797.1 mouse_genomes_project 2 103693953 103694109 + processed_pseudogene processed_pseudogene MGP_AJ_T0017886.1 MGP_AJ_G0015457.1 mouse_genomes_project 2 155090058 155094344 - Gm14169 processed_transcript processed_transcript MGP_AJ_T0007257.1 MGP_AJ_G0005947.1 mouse_genomes_project 2 76913054 76920172 + Gm26755 lincRNA lincRNA MGP_AJ_T0053336.1 MGP_AJ_G0025462.1 mouse_genomes_project 2 23380092 23397988 - MGP_AJ_P0053336 Snapc4 protein_coding protein_coding MGP_AJ_T0053337.1 MGP_AJ_G0025462.1 mouse_genomes_project 2 23380094 23382352 - Snapc4 protein_coding processed_transcript MGP_AJ_T0053338.1 MGP_AJ_G0025462.1 mouse_genomes_project 2 23380101 23397992 - MGP_AJ_P0053338 Snapc4 protein_coding protein_coding MGP_AJ_T0053339.1 MGP_AJ_G0025462.1 mouse_genomes_project 2 23380103 23397971 - Snapc4 protein_coding processed_transcript MGP_AJ_T0053340.1 MGP_AJ_G0025462.1 mouse_genomes_project 2 23383941 23385098 - Snapc4 protein_coding processed_transcript MGP_AJ_T0053341.1 MGP_AJ_G0025462.1 mouse_genomes_project 2 23386784 23390998 - MGP_AJ_P0053341 Snapc4 protein_coding protein_coding MGP_AJ_T0053342.1 MGP_AJ_G0025462.1 mouse_genomes_project 2 23386813 23390978 - Snapc4 protein_coding processed_transcript MGP_AJ_T0053343.1 MGP_AJ_G0025462.1 mouse_genomes_project 2 23386834 23388472 - Snapc4 protein_coding processed_transcript MGP_AJ_T0053344.1 MGP_AJ_G0025462.1 mouse_genomes_project 2 23387311 23391495 - Snapc4 protein_coding processed_transcript MGP_AJ_T0053345.1 MGP_AJ_G0025462.1 mouse_genomes_project 2 23388160 23390722 - Snapc4 protein_coding processed_transcript MGP_AJ_T0053346.1 MGP_AJ_G0025462.1 mouse_genomes_project 2 23388160 23397974 - Snapc4 protein_coding processed_transcript MGP_AJ_T0053347.1 MGP_AJ_G0025462.1 mouse_genomes_project 2 23390928 23392105 - Snapc4 protein_coding processed_transcript MGP_AJ_T0053348.1 MGP_AJ_G0025462.1 mouse_genomes_project 2 23394942 23397992 - Snapc4 protein_coding processed_transcript MGP_AJ_T0053349.1 MGP_AJ_G0025462.1 mouse_genomes_project 2 23395647 23397965 - Snapc4 protein_coding processed_transcript MGP_AJ_T0052728.1 MGP_AJ_G0025349.1 mouse_genomes_project 2 15064923 15077450 - MGP_AJ_P0052728 A930004D18Rik protein_coding protein_coding MGP_AJ_T0052729.1 MGP_AJ_G0025349.1 mouse_genomes_project 2 15067656 15068491 - A930004D18Rik protein_coding processed_transcript MGP_AJ_T0052730.1 MGP_AJ_G0025349.1 mouse_genomes_project 2 15067704 15068602 - A930004D18Rik protein_coding processed_transcript MGP_AJ_T0013802.1 MGP_AJ_G0011897.1 mouse_genomes_project 2 144987584 144988421 + processed_pseudogene processed_pseudogene MGP_AJ_T0057544.1 MGP_AJ_G0026427.1 mouse_genomes_project 2 125565118 125577636 - MGP_AJ_P0057544 Zfp661 protein_coding protein_coding MGP_AJ_T0057545.1 MGP_AJ_G0026427.1 mouse_genomes_project 2 125565993 125575172 - MGP_AJ_P0057545 Zfp661 protein_coding protein_coding MGP_AJ_T0057546.1 MGP_AJ_G0026427.1 mouse_genomes_project 2 125566000 125575180 - MGP_AJ_P0057546 Zfp661 protein_coding protein_coding MGP_AJ_T0057547.1 MGP_AJ_G0026427.1 mouse_genomes_project 2 125567395 125572005 - MGP_AJ_P0057547 Zfp661 protein_coding protein_coding MGP_AJ_T0059735.1 MGP_AJ_G0026956.1 mouse_genomes_project 2 179094204 179096223 + MGP_AJ_P0059735 Rps21 protein_coding unknown_likely_coding MGP_AJ_T0059736.1 MGP_AJ_G0026956.1 mouse_genomes_project 2 179094214 179095283 + MGP_AJ_P0059736 Rps21 protein_coding protein_coding MGP_AJ_T0059737.1 MGP_AJ_G0026956.1 mouse_genomes_project 2 179094216 179095280 + Rps21 protein_coding retained_intron MGP_AJ_T0059738.1 MGP_AJ_G0026956.1 mouse_genomes_project 2 179094255 179094832 + Rps21 protein_coding retained_intron MGP_AJ_T0059739.1 MGP_AJ_G0026956.1 mouse_genomes_project 2 179094255 179094981 + Rps21 protein_coding retained_intron MGP_AJ_T0054334.1 MGP_AJ_G0025616.1 mouse_genomes_project 2 31861672 31946080 - MGP_AJ_P0054334 Gapvd1 protein_coding protein_coding MGP_AJ_T0054335.1 MGP_AJ_G0025616.1 mouse_genomes_project 2 31863254 31945326 - MGP_AJ_P0054335 Gapvd1 protein_coding protein_coding MGP_AJ_T0054336.1 MGP_AJ_G0025616.1 mouse_genomes_project 2 31864069 31945427 - MGP_AJ_P0054336 Gapvd1 protein_coding protein_coding MGP_AJ_T0054337.1 MGP_AJ_G0025616.1 mouse_genomes_project 2 31864069 31945427 - MGP_AJ_P0054337 Gapvd1 protein_coding protein_coding MGP_AJ_T0054338.1 MGP_AJ_G0025616.1 mouse_genomes_project 2 31864567 31890743 - MGP_AJ_P0054338 Gapvd1 protein_coding protein_coding MGP_AJ_T0054339.1 MGP_AJ_G0025616.1 mouse_genomes_project 2 31864978 31869885 - MGP_AJ_P0054339 Gapvd1 protein_coding nonsense_mediated_decay MGP_AJ_T0054340.1 MGP_AJ_G0025616.1 mouse_genomes_project 2 31879175 31891003 - Gapvd1 protein_coding processed_transcript MGP_AJ_T0054341.1 MGP_AJ_G0025616.1 mouse_genomes_project 2 31882777 31886817 - Gapvd1 protein_coding retained_intron MGP_AJ_T0054342.1 MGP_AJ_G0025616.1 mouse_genomes_project 2 31885587 31916797 - MGP_AJ_P0054342 Gapvd1 protein_coding protein_coding MGP_AJ_T0054343.1 MGP_AJ_G0025616.1 mouse_genomes_project 2 31885608 31916700 - MGP_AJ_P0054343 Gapvd1 protein_coding protein_coding MGP_AJ_T0054344.1 MGP_AJ_G0025616.1 mouse_genomes_project 2 31890659 31898575 - MGP_AJ_P0054344 Gapvd1 protein_coding nonsense_mediated_decay MGP_AJ_T0054345.1 MGP_AJ_G0025616.1 mouse_genomes_project 2 31890703 31898690 - Gapvd1 protein_coding processed_transcript MGP_AJ_T0054346.1 MGP_AJ_G0025616.1 mouse_genomes_project 2 31895584 31899086 - Gapvd1 protein_coding retained_intron MGP_AJ_T0054347.1 MGP_AJ_G0025616.1 mouse_genomes_project 2 31914167 31945291 - Gapvd1 protein_coding retained_intron MGP_AJ_T0054348.1 MGP_AJ_G0025616.1 mouse_genomes_project 2 31916770 31945277 - MGP_AJ_P0054348 Gapvd1 protein_coding protein_coding MGP_AJ_T0055297.1 MGP_AJ_G0025804.1 mouse_genomes_project 2 69078200 69151669 + Itga6 protein_coding processed_transcript MGP_AJ_T0055298.1 MGP_AJ_G0025804.1 mouse_genomes_project 2 69118275 69152358 + Itga6 protein_coding processed_transcript MGP_AJ_T0055299.1 MGP_AJ_G0025804.1 mouse_genomes_project 2 69118286 69189248 + MGP_AJ_P0055299 Itga6 protein_coding protein_coding MGP_AJ_T0055300.1 MGP_AJ_G0025804.1 mouse_genomes_project 2 69118324 69189236 + MGP_AJ_P0055300 Itga6 protein_coding protein_coding MGP_AJ_T0055301.1 MGP_AJ_G0025804.1 mouse_genomes_project 2 69158155 69187433 + MGP_AJ_P0055301 Itga6 protein_coding protein_coding MGP_AJ_T0055302.1 MGP_AJ_G0025804.1 mouse_genomes_project 2 69170620 69171455 + Itga6 protein_coding processed_transcript MGP_AJ_T0055303.1 MGP_AJ_G0025804.1 mouse_genomes_project 2 69181857 69190883 + Itga6 protein_coding processed_transcript MGP_AJ_T0007151.1 MGP_AJ_G0005864.1 mouse_genomes_project 2 15856280 15858858 - Carlr lincRNA lincRNA MGP_AJ_T0004027.1 MGP_AJ_G0003578.1 mouse_genomes_project 2 74129842 74193769 + Gm13938 antisense antisense MGP_AJ_T0007293.1 MGP_AJ_G0005976.1 mouse_genomes_project 2 104142359 104203361 - Gm14015 lincRNA lincRNA MGP_AJ_T0099801.1 MGP_AJ_G0037767.1 mouse_genomes_project 2 165363625 165363728 + Gm24477 snRNA snRNA MGP_AJ_T0013800.1 MGP_AJ_G0011895.1 mouse_genomes_project 2 143792115 143792427 - processed_pseudogene processed_pseudogene MGP_AJ_T0055822.1 MGP_AJ_G0025969.1 mouse_genomes_project 2 84606871 84607810 - MGP_AJ_P0055822 Olfr1111 protein_coding protein_coding MGP_AJ_T0099796.1 MGP_AJ_G0037762.1 mouse_genomes_project 2 151457038 151457141 + Gm25643 snRNA snRNA MGP_AJ_T0058326.1 MGP_AJ_G0026622.1 mouse_genomes_project 2 150621131 150627748 - MGP_AJ_P0058326 Trib3 protein_coding protein_coding MGP_AJ_T0058327.1 MGP_AJ_G0026622.1 mouse_genomes_project 2 150623457 150627704 - Trib3 protein_coding processed_transcript MGP_AJ_T0058328.1 MGP_AJ_G0026622.1 mouse_genomes_project 2 150626641 150627686 - Trib3 protein_coding retained_intron MGP_AJ_T0013774.1 MGP_AJ_G0011869.1 mouse_genomes_project 2 132793024 132793831 - processed_pseudogene processed_pseudogene MGP_AJ_T0004057.1 MGP_AJ_G0003597.1 mouse_genomes_project 2 111244779 111248136 - Gm13964 antisense antisense MGP_AJ_T0053490.1 MGP_AJ_G0025485.1 mouse_genomes_project 2 24085384 24095596 - MGP_AJ_P0053490 Tmem8c protein_coding protein_coding MGP_AJ_T0053491.1 MGP_AJ_G0025485.1 mouse_genomes_project 2 24085386 24091285 - MGP_AJ_P0053491 Tmem8c protein_coding protein_coding MGP_AJ_T0058526.1 MGP_AJ_G0026686.1 mouse_genomes_project 2 152985973 153004316 - MGP_AJ_P0058526 Pxmp4 protein_coding protein_coding MGP_AJ_T0058527.1 MGP_AJ_G0026686.1 mouse_genomes_project 2 152995619 153004296 - MGP_AJ_P0058527 Pxmp4 protein_coding protein_coding MGP_AJ_T0055899.1 MGP_AJ_G0026033.1 mouse_genomes_project 2 86545056 86545983 - MGP_AJ_P0055899 Olfr1208 protein_coding protein_coding MGP_AJ_T0013670.1 MGP_AJ_G0011765.1 mouse_genomes_project 2 92026203 92026800 - processed_pseudogene processed_pseudogene MGP_AJ_T0003994.1 MGP_AJ_G0003557.1 mouse_genomes_project 2 64578695 64667052 - Gm13599 antisense antisense MGP_AJ_T0058171.1 MGP_AJ_G0026575.1 mouse_genomes_project 2 146819647 146857823 - MGP_AJ_P0058171 Napb protein_coding nonsense_mediated_decay MGP_AJ_T0058172.1 MGP_AJ_G0026575.1 mouse_genomes_project 2 146819647 146857877 - MGP_AJ_P0058172 Napb protein_coding protein_coding MGP_AJ_T0058173.1 MGP_AJ_G0026575.1 mouse_genomes_project 2 146832079 146857801 - Napb protein_coding retained_intron MGP_AJ_T0058191.1 MGP_AJ_G0026585.1 mouse_genomes_project 2 147152640 147156709 + MGP_AJ_P0058191 protein_coding protein_coding MGP_AJ_T0054582.1 MGP_AJ_G0025679.1 mouse_genomes_project 2 35737401 35818030 + MGP_AJ_P0054582 Nek6 protein_coding protein_coding MGP_AJ_T0054583.1 MGP_AJ_G0025679.1 mouse_genomes_project 2 35737426 35810900 + MGP_AJ_P0054583 Nek6 protein_coding protein_coding MGP_AJ_T0054584.1 MGP_AJ_G0025679.1 mouse_genomes_project 2 35737572 35809191 + MGP_AJ_P0054584 Nek6 protein_coding protein_coding MGP_AJ_T0054585.1 MGP_AJ_G0025679.1 mouse_genomes_project 2 35740339 35783598 + MGP_AJ_P0054585 Nek6 protein_coding protein_coding MGP_AJ_T0054586.1 MGP_AJ_G0025679.1 mouse_genomes_project 2 35740384 35786678 + MGP_AJ_P0054586 Nek6 protein_coding protein_coding MGP_AJ_T0013552.1 MGP_AJ_G0011647.1 mouse_genomes_project 2 54415168 54415858 + processed_pseudogene processed_pseudogene MGP_AJ_T0010334.1 MGP_AJ_G0008456.1 mouse_genomes_project 2 7490489 7490610 + Mir669f miRNA miRNA MGP_AJ_T0059165.1 MGP_AJ_G0026820.1 mouse_genomes_project 2 162997660 163001064 - MGP_AJ_P0059165 Trp53tg5 protein_coding protein_coding MGP_AJ_T0054823.1 MGP_AJ_G0025717.1 mouse_genomes_project 2 51770213 52444411 + MGP_AJ_P0054823 Galnt13 protein_coding protein_coding MGP_AJ_T0054824.1 MGP_AJ_G0025717.1 mouse_genomes_project 2 51770283 52444411 + MGP_AJ_P0054824 Galnt13 protein_coding protein_coding MGP_AJ_T0054825.1 MGP_AJ_G0025717.1 mouse_genomes_project 2 51770283 52444411 + MGP_AJ_P0054825 Galnt13 protein_coding protein_coding MGP_AJ_T0054826.1 MGP_AJ_G0025717.1 mouse_genomes_project 2 51770387 52058827 + MGP_AJ_P0054826 Galnt13 protein_coding protein_coding MGP_AJ_T0054827.1 MGP_AJ_G0025717.1 mouse_genomes_project 2 51860910 52439056 + MGP_AJ_P0054827 Galnt13 protein_coding protein_coding MGP_AJ_T0055756.1 MGP_AJ_G0025906.1 mouse_genomes_project 2 83080597 83081539 + MGP_AJ_P0055756 Olfr1008 protein_coding protein_coding MGP_AJ_T0057386.1 MGP_AJ_G0026387.1 mouse_genomes_project 2 123056642 123071363 - MGP_AJ_P0057386 protein_coding protein_coding MGP_AJ_T0057440.1 MGP_AJ_G0026404.1 mouse_genomes_project 2 124554959 124581847 - MGP_AJ_P0057440 Hdc protein_coding protein_coding MGP_AJ_T0057441.1 MGP_AJ_G0026404.1 mouse_genomes_project 2 124555876 124559598 - Hdc protein_coding processed_transcript MGP_AJ_T0057442.1 MGP_AJ_G0026404.1 mouse_genomes_project 2 124561570 124581830 - Hdc protein_coding retained_intron MGP_AJ_T0057443.1 MGP_AJ_G0026404.1 mouse_genomes_project 2 124566443 124569756 - Hdc protein_coding processed_transcript MGP_AJ_T0057444.1 MGP_AJ_G0026404.1 mouse_genomes_project 2 124579316 124582468 - Hdc protein_coding processed_transcript MGP_AJ_T0055147.1 MGP_AJ_G0025775.1 mouse_genomes_project 2 66666594 66690580 + MGP_AJ_P0055147 Dhrs9 protein_coding protein_coding MGP_AJ_T0004046.1 MGP_AJ_G0003591.1 mouse_genomes_project 2 102740756 102754063 - Wt1os antisense antisense MGP_AJ_T0004047.1 MGP_AJ_G0003591.1 mouse_genomes_project 2 102741079 102794220 - Wt1os antisense antisense MGP_AJ_T0004048.1 MGP_AJ_G0003591.1 mouse_genomes_project 2 102742129 102742330 - Wt1os antisense antisense MGP_AJ_T0004049.1 MGP_AJ_G0003591.1 mouse_genomes_project 2 102757885 102794113 - Wt1os antisense antisense MGP_AJ_T0059454.1 MGP_AJ_G0026882.1 mouse_genomes_project 2 166140149 166144758 + MGP_AJ_P0059454 Snai1 protein_coding protein_coding MGP_AJ_T0007268.1 MGP_AJ_G0005958.1 mouse_genomes_project 2 90375355 90393167 + Gm13816 lincRNA lincRNA MGP_AJ_T0057664.1 MGP_AJ_G0026461.1 mouse_genomes_project 2 128313356 128318228 + protein_coding retained_intron MGP_AJ_T0057665.1 MGP_AJ_G0026461.1 mouse_genomes_project 2 128313358 128317828 + protein_coding retained_intron MGP_AJ_T0057666.1 MGP_AJ_G0026461.1 mouse_genomes_project 2 128313367 128316453 + MGP_AJ_P0057666 protein_coding protein_coding MGP_AJ_T0057667.1 MGP_AJ_G0026461.1 mouse_genomes_project 2 128313386 128317346 + MGP_AJ_P0057667 protein_coding unknown_likely_coding MGP_AJ_T0057668.1 MGP_AJ_G0026461.1 mouse_genomes_project 2 128313404 128315014 + MGP_AJ_P0057668 protein_coding protein_coding MGP_AJ_T0057669.1 MGP_AJ_G0026461.1 mouse_genomes_project 2 128313743 128314612 + protein_coding retained_intron MGP_AJ_T0057670.1 MGP_AJ_G0026461.1 mouse_genomes_project 2 128314711 128315182 + protein_coding retained_intron MGP_AJ_T0057671.1 MGP_AJ_G0026461.1 mouse_genomes_project 2 128315074 128317828 + MGP_AJ_P0057671 protein_coding nonsense_mediated_decay MGP_AJ_T0057672.1 MGP_AJ_G0026461.1 mouse_genomes_project 2 128315215 128316486 + protein_coding retained_intron MGP_AJ_T0057673.1 MGP_AJ_G0026461.1 mouse_genomes_project 2 128315390 128316871 + protein_coding retained_intron MGP_AJ_T0057674.1 MGP_AJ_G0026461.1 mouse_genomes_project 2 128315512 128316875 + MGP_AJ_P0057674 protein_coding nonsense_mediated_decay MGP_AJ_T0057675.1 MGP_AJ_G0026461.1 mouse_genomes_project 2 128315580 128316198 + protein_coding retained_intron MGP_AJ_T0057676.1 MGP_AJ_G0026461.1 mouse_genomes_project 2 128316137 128317379 + protein_coding retained_intron MGP_AJ_T0057677.1 MGP_AJ_G0026461.1 mouse_genomes_project 2 128316230 128317146 + MGP_AJ_P0057677 protein_coding protein_coding MGP_AJ_T0102522.1 MGP_AJ_G0040264.1 mouse_genomes_project 2 172521131 172578493 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0003948.1 MGP_AJ_G0003521.1 mouse_genomes_project 2 29019135 29024619 - Gm13441 antisense antisense MGP_AJ_T0017893.1 MGP_AJ_G0015461.1 mouse_genomes_project 2 156868747 156871891 - Snhg17 processed_transcript lincRNA MGP_AJ_T0017894.1 MGP_AJ_G0015461.1 mouse_genomes_project 2 156870354 156876558 - Snhg17 processed_transcript lincRNA MGP_AJ_T0017895.1 MGP_AJ_G0015461.1 mouse_genomes_project 2 156870812 156876570 - Snhg17 processed_transcript retained_intron MGP_AJ_T0017896.1 MGP_AJ_G0015461.1 mouse_genomes_project 2 156870812 156876567 - Snhg17 processed_transcript lincRNA MGP_AJ_T0017897.1 MGP_AJ_G0015461.1 mouse_genomes_project 2 156870812 156876628 - Snhg17 processed_transcript lincRNA MGP_AJ_T0017898.1 MGP_AJ_G0015461.1 mouse_genomes_project 2 156870832 156876561 - Snhg17 processed_transcript retained_intron MGP_AJ_T0017899.1 MGP_AJ_G0015461.1 mouse_genomes_project 2 156871069 156873511 - Snhg17 processed_transcript lincRNA MGP_AJ_T0017900.1 MGP_AJ_G0015461.1 mouse_genomes_project 2 156874285 156876523 - Snhg17 processed_transcript lincRNA MGP_AJ_T0017901.1 MGP_AJ_G0015461.1 mouse_genomes_project 2 156875914 156876590 - Snhg17 processed_transcript lincRNA MGP_AJ_T0003918.1 MGP_AJ_G0003501.1 mouse_genomes_project 2 22597404 22624310 + Fcnaos antisense antisense MGP_AJ_T0003919.1 MGP_AJ_G0003501.1 mouse_genomes_project 2 22605433 22624310 + Fcnaos antisense antisense MGP_AJ_T0003920.1 MGP_AJ_G0003501.1 mouse_genomes_project 2 22620142 22624311 + Fcnaos antisense antisense MGP_AJ_T0003921.1 MGP_AJ_G0003501.1 mouse_genomes_project 2 22623197 22624313 + Fcnaos antisense antisense MGP_AJ_T0053883.1 MGP_AJ_G0025548.1 mouse_genomes_project 2 27557805 27560491 - MGP_AJ_P0053883 Ier5l protein_coding protein_coding MGP_AJ_T0052464.1 MGP_AJ_G0025308.1 mouse_genomes_project 2 3312659 3437071 + MGP_AJ_P0052464 Usp6nl protein_coding protein_coding MGP_AJ_T0052465.1 MGP_AJ_G0025308.1 mouse_genomes_project 2 3312764 3411693 + Usp6nl protein_coding processed_transcript MGP_AJ_T0052466.1 MGP_AJ_G0025308.1 mouse_genomes_project 2 3342188 3434175 + MGP_AJ_P0052466 Usp6nl protein_coding protein_coding MGP_AJ_T0052467.1 MGP_AJ_G0025308.1 mouse_genomes_project 2 3411602 3415516 + Usp6nl protein_coding processed_transcript MGP_AJ_T0058886.1 MGP_AJ_G0026748.1 mouse_genomes_project 2 155930633 155983560 + MGP_AJ_P0058886 Src protein_coding protein_coding MGP_AJ_T0058887.1 MGP_AJ_G0026748.1 mouse_genomes_project 2 155936307 155967552 + Src protein_coding processed_transcript MGP_AJ_T0058888.1 MGP_AJ_G0026748.1 mouse_genomes_project 2 155936471 155983587 + MGP_AJ_P0058888 Src protein_coding protein_coding MGP_AJ_T0058889.1 MGP_AJ_G0026748.1 mouse_genomes_project 2 155936484 155983563 + MGP_AJ_P0058889 Src protein_coding protein_coding MGP_AJ_T0058890.1 MGP_AJ_G0026748.1 mouse_genomes_project 2 155936583 155970304 + Src protein_coding processed_transcript MGP_AJ_T0058891.1 MGP_AJ_G0026748.1 mouse_genomes_project 2 155936583 155967451 + Src protein_coding processed_transcript MGP_AJ_T0058892.1 MGP_AJ_G0026748.1 mouse_genomes_project 2 155967515 155983563 + MGP_AJ_P0058892 Src protein_coding protein_coding MGP_AJ_T0058893.1 MGP_AJ_G0026748.1 mouse_genomes_project 2 155968787 155982081 + MGP_AJ_P0058893 Src protein_coding protein_coding MGP_AJ_T0055885.1 MGP_AJ_G0026020.1 mouse_genomes_project 2 86115108 86116044 + MGP_AJ_P0055885 Olfr1184 protein_coding protein_coding MGP_AJ_T0007441.1 MGP_AJ_G0006100.1 mouse_genomes_project 2 179685284 179699237 + Gm14344 lincRNA lincRNA MGP_AJ_T0101097.1 MGP_AJ_G0039063.1 mouse_genomes_project 2 165668978 165669067 + Gm23201 snoRNA snoRNA MGP_AJ_T0013507.1 MGP_AJ_G0011602.1 mouse_genomes_project 2 36527370 36528135 + processed_pseudogene processed_pseudogene MGP_AJ_T0010371.1 MGP_AJ_G0008493.1 mouse_genomes_project 2 11342231 11342310 + Mir511 miRNA miRNA MGP_AJ_T0001099.1 MGP_AJ_G0001027.1 mouse_genomes_project 2 127203706 127205649 - TEC TEC MGP_AJ_T0055619.1 MGP_AJ_G0025869.1 mouse_genomes_project 2 81146285 81191648 + Itgav protein_coding retained_intron MGP_AJ_T0055620.1 MGP_AJ_G0025869.1 mouse_genomes_project 2 81146285 81241614 + MGP_AJ_P0055620 Itgav protein_coding protein_coding MGP_AJ_T0055621.1 MGP_AJ_G0025869.1 mouse_genomes_project 2 81146340 81170304 + MGP_AJ_P0055621 Itgav protein_coding protein_coding MGP_AJ_T0055622.1 MGP_AJ_G0025869.1 mouse_genomes_project 2 81146345 81162632 + Itgav protein_coding processed_transcript MGP_AJ_T0055623.1 MGP_AJ_G0025869.1 mouse_genomes_project 2 81146354 81170732 + Itgav protein_coding retained_intron MGP_AJ_T0055624.1 MGP_AJ_G0025869.1 mouse_genomes_project 2 81146415 81147676 + Itgav protein_coding processed_transcript MGP_AJ_T0055625.1 MGP_AJ_G0025869.1 mouse_genomes_project 2 81146443 81241614 + MGP_AJ_P0055625 Itgav protein_coding protein_coding MGP_AJ_T0055626.1 MGP_AJ_G0025869.1 mouse_genomes_project 2 81236548 81238684 + MGP_AJ_P0055626 Itgav protein_coding protein_coding MGP_AJ_T0055627.1 MGP_AJ_G0025869.1 mouse_genomes_project 2 81237619 81241614 + MGP_AJ_P0055627 Itgav protein_coding protein_coding MGP_AJ_T0057711.1 MGP_AJ_G0026470.1 mouse_genomes_project 2 128490079 128593537 + MGP_AJ_P0057711 Ptpra protein_coding protein_coding MGP_AJ_T0057712.1 MGP_AJ_G0026470.1 mouse_genomes_project 2 128514164 128597801 + MGP_AJ_P0057712 Ptpra protein_coding protein_coding MGP_AJ_T0058829.1 MGP_AJ_G0026737.1 mouse_genomes_project 2 155364697 155379664 - MGP_AJ_P0058829 Sla2 protein_coding protein_coding MGP_AJ_T0058831.1 MGP_AJ_G0026737.1 mouse_genomes_project 2 155365162 155379778 - MGP_AJ_P0058831 Sla2 protein_coding protein_coding MGP_AJ_T0010332.1 MGP_AJ_G0008454.1 mouse_genomes_project 2 7489923 7490007 + Mir466m miRNA miRNA MGP_AJ_T0001027.1 MGP_AJ_G0000958.1 mouse_genomes_project 2 8367972 8368861 + TEC TEC MGP_AJ_T0053626.1 MGP_AJ_G0025514.1 mouse_genomes_project 2 26192589 26198654 + MGP_AJ_P0053626 Setx protein_coding protein_coding MGP_AJ_T0053627.1 MGP_AJ_G0025514.1 mouse_genomes_project 2 26193400 26251521 + MGP_AJ_P0053627 Setx protein_coding protein_coding MGP_AJ_T0053628.1 MGP_AJ_G0025514.1 mouse_genomes_project 2 26194294 26198858 + Setx protein_coding retained_intron MGP_AJ_T0053629.1 MGP_AJ_G0025514.1 mouse_genomes_project 2 26226345 26231891 + Setx protein_coding processed_transcript MGP_AJ_T0053630.1 MGP_AJ_G0025514.1 mouse_genomes_project 2 26233586 26248590 + MGP_AJ_P0053630 Setx protein_coding protein_coding MGP_AJ_T0013843.1 MGP_AJ_G0011938.1 mouse_genomes_project 2 155276261 155276964 - processed_pseudogene processed_pseudogene MGP_AJ_T0055900.1 MGP_AJ_G0026034.1 mouse_genomes_project 2 86559266 86560199 - MGP_AJ_P0055900 Olfr1209 protein_coding protein_coding MGP_AJ_T0013735.1 MGP_AJ_G0011830.1 mouse_genomes_project 2 117473711 117474097 + processed_pseudogene processed_pseudogene MGP_AJ_T0059370.1 MGP_AJ_G0026867.1 mouse_genomes_project 2 165158705 165174985 - MGP_AJ_P0059370 Prex1 protein_coding protein_coding MGP_AJ_T0059371.1 MGP_AJ_G0026867.1 mouse_genomes_project 2 165159547 165308301 - MGP_AJ_P0059371 Prex1 protein_coding protein_coding MGP_AJ_T0059372.1 MGP_AJ_G0026867.1 mouse_genomes_project 2 165160056 165164717 - Prex1 protein_coding processed_transcript MGP_AJ_T0059373.1 MGP_AJ_G0026867.1 mouse_genomes_project 2 165193452 165196862 - Prex1 protein_coding retained_intron MGP_AJ_T0059374.1 MGP_AJ_G0026867.1 mouse_genomes_project 2 165226816 165297486 - Prex1 protein_coding processed_transcript MGP_AJ_T0059375.1 MGP_AJ_G0026867.1 mouse_genomes_project 2 165237759 165308342 - Prex1 protein_coding retained_intron MGP_AJ_T0059376.1 MGP_AJ_G0026867.1 mouse_genomes_project 2 165237972 165308153 - Prex1 protein_coding retained_intron MGP_AJ_T0017907.1 MGP_AJ_G0015464.1 mouse_genomes_project 2 160053135 160053458 - Gm29229 processed_transcript processed_transcript MGP_AJ_T0010428.1 MGP_AJ_G0008550.1 mouse_genomes_project 2 89570078 89570139 - Mir6999 miRNA miRNA MGP_AJ_T0056684.1 MGP_AJ_G0026232.1 mouse_genomes_project 2 109504471 109505410 + MGP_AJ_P0056684 Olfr1301 protein_coding protein_coding MGP_AJ_T0017766.1 MGP_AJ_G0015392.1 mouse_genomes_project 2 47634121 47704720 + Gm13483 processed_transcript processed_transcript MGP_AJ_T0017767.1 MGP_AJ_G0015392.1 mouse_genomes_project 2 47634175 47774052 + Gm13483 processed_transcript processed_transcript MGP_AJ_T0054757.1 MGP_AJ_G0025703.1 mouse_genomes_project 2 48452715 48471495 - MGP_AJ_P0054757 Rnd3 protein_coding protein_coding MGP_AJ_T0054758.1 MGP_AJ_G0025703.1 mouse_genomes_project 2 48454108 48471494 - MGP_AJ_P0054758 Rnd3 protein_coding protein_coding MGP_AJ_T0054759.1 MGP_AJ_G0025703.1 mouse_genomes_project 2 48459399 48471478 - Rnd3 protein_coding retained_intron MGP_AJ_T0013716.1 MGP_AJ_G0011811.1 mouse_genomes_project 2 109239828 109285330 + processed_pseudogene processed_pseudogene MGP_AJ_T0099792.1 MGP_AJ_G0037758.1 mouse_genomes_project 2 137690999 137691103 + Gm27385 snRNA snRNA MGP_AJ_T0010431.1 MGP_AJ_G0008553.1 mouse_genomes_project 2 90225658 90225730 + Mir7221 miRNA miRNA MGP_AJ_T0059792.1 MGP_AJ_G0026971.1 mouse_genomes_project 2 179781930 179786915 + Birc7 protein_coding retained_intron MGP_AJ_T0059793.1 MGP_AJ_G0026971.1 mouse_genomes_project 2 179781930 179786918 + MGP_AJ_P0059793 Birc7 protein_coding protein_coding MGP_AJ_T0059083.1 MGP_AJ_G0026791.1 mouse_genomes_project 2 162055391 162094598 + MGP_AJ_P0059083 Hnf4a protein_coding protein_coding MGP_AJ_T0059084.1 MGP_AJ_G0026791.1 mouse_genomes_project 2 162088767 162101102 + Hnf4a protein_coding processed_transcript MGP_AJ_T0059085.1 MGP_AJ_G0026791.1 mouse_genomes_project 2 162089137 162114605 + MGP_AJ_P0059085 Hnf4a protein_coding protein_coding MGP_AJ_T0059086.1 MGP_AJ_G0026791.1 mouse_genomes_project 2 162089138 162114600 + MGP_AJ_P0059086 Hnf4a protein_coding protein_coding MGP_AJ_T0059087.1 MGP_AJ_G0026791.1 mouse_genomes_project 2 162092033 162101101 + MGP_AJ_P0059087 Hnf4a protein_coding protein_coding MGP_AJ_T0057846.1 MGP_AJ_G0026496.1 mouse_genomes_project 2 129595852 129612279 - MGP_AJ_P0057846 Adra1d protein_coding protein_coding MGP_AJ_T0007344.1 MGP_AJ_G0006017.1 mouse_genomes_project 2 133884124 133885107 - Gm14210 lincRNA lincRNA MGP_AJ_T0056342.1 MGP_AJ_G0026144.1 mouse_genomes_project 2 91617453 91621648 - Alkbh3 protein_coding processed_transcript MGP_AJ_T0056343.1 MGP_AJ_G0026144.1 mouse_genomes_project 2 91617453 91621679 - Alkbh3 protein_coding processed_transcript MGP_AJ_T0056344.1 MGP_AJ_G0026144.1 mouse_genomes_project 2 91617453 91648369 - MGP_AJ_P0056344 Alkbh3 protein_coding protein_coding MGP_AJ_T0056345.1 MGP_AJ_G0026144.1 mouse_genomes_project 2 91617532 91618530 - Alkbh3 protein_coding processed_transcript MGP_AJ_T0056346.1 MGP_AJ_G0026144.1 mouse_genomes_project 2 91617540 91648292 - MGP_AJ_P0056346 Alkbh3 protein_coding protein_coding MGP_AJ_T0056347.1 MGP_AJ_G0026144.1 mouse_genomes_project 2 91633006 91647993 - Alkbh3 protein_coding processed_transcript MGP_AJ_T0056348.1 MGP_AJ_G0026144.1 mouse_genomes_project 2 91633075 91641991 - Alkbh3 protein_coding processed_transcript MGP_AJ_T0056349.1 MGP_AJ_G0026144.1 mouse_genomes_project 2 91633075 91648316 - MGP_AJ_P0056349 Alkbh3 protein_coding protein_coding MGP_AJ_T0056350.1 MGP_AJ_G0026144.1 mouse_genomes_project 2 91642577 91648316 - Alkbh3 protein_coding processed_transcript MGP_AJ_T0056351.1 MGP_AJ_G0026144.1 mouse_genomes_project 2 91643047 91648314 - Alkbh3 protein_coding processed_transcript MGP_AJ_T0056352.1 MGP_AJ_G0026144.1 mouse_genomes_project 2 91644840 91648314 - Alkbh3 protein_coding processed_transcript MGP_AJ_T0054602.1 MGP_AJ_G0025683.1 mouse_genomes_project 2 36163832 36199716 + MGP_AJ_P0054602 Olfml2a protein_coding protein_coding MGP_AJ_T0013447.1 MGP_AJ_G0011542.1 mouse_genomes_project 2 15700246 15700508 - processed_pseudogene processed_pseudogene MGP_AJ_T0055978.1 MGP_AJ_G0026089.1 mouse_genomes_project 2 87867543 87868470 - MGP_AJ_P0055978 Olfr1272 protein_coding protein_coding MGP_AJ_T0058349.1 MGP_AJ_G0026639.1 mouse_genomes_project 2 150917093 150925345 + MGP_AJ_P0058349 Rem1 protein_coding protein_coding MGP_AJ_T0058350.1 MGP_AJ_G0026639.1 mouse_genomes_project 2 150917095 150918454 + MGP_AJ_P0058350 Rem1 protein_coding protein_coding MGP_AJ_T0058351.1 MGP_AJ_G0026639.1 mouse_genomes_project 2 150923117 150925349 + Rem1 protein_coding retained_intron MGP_AJ_T0056641.1 MGP_AJ_G0026204.1 mouse_genomes_project 2 107680837 107705764 + MGP_AJ_P0056641 Ccdc34 protein_coding protein_coding MGP_AJ_T0056642.1 MGP_AJ_G0026204.1 mouse_genomes_project 2 107680982 107826730 + MGP_AJ_P0056642 Ccdc34 protein_coding protein_coding MGP_AJ_T0056643.1 MGP_AJ_G0026204.1 mouse_genomes_project 2 107681000 107705770 + MGP_AJ_P0056643 Ccdc34 protein_coding nonsense_mediated_decay MGP_AJ_T0056644.1 MGP_AJ_G0026204.1 mouse_genomes_project 2 107684998 107701711 + Ccdc34 protein_coding retained_intron MGP_AJ_T0056645.1 MGP_AJ_G0026204.1 mouse_genomes_project 2 107698471 107705297 + Ccdc34 protein_coding retained_intron MGP_AJ_T0056646.1 MGP_AJ_G0026204.1 mouse_genomes_project 2 107701342 107705112 + Ccdc34 protein_coding retained_intron MGP_AJ_T0056740.1 MGP_AJ_G0026258.1 mouse_genomes_project 2 111491493 111504886 - MGP_AJ_P0056740 Grem1 protein_coding protein_coding MGP_AJ_T0052885.1 MGP_AJ_G0025375.1 mouse_genomes_project 2 20061631 20103979 + MGP_AJ_P0052885 Yme1l1 protein_coding protein_coding MGP_AJ_T0052886.1 MGP_AJ_G0025375.1 mouse_genomes_project 2 20061780 20082350 + Yme1l1 protein_coding processed_transcript MGP_AJ_T0052887.1 MGP_AJ_G0025375.1 mouse_genomes_project 2 20061790 20065879 + Yme1l1 protein_coding processed_transcript MGP_AJ_T0052888.1 MGP_AJ_G0025375.1 mouse_genomes_project 2 20062095 20069856 + Yme1l1 protein_coding processed_transcript MGP_AJ_T0052889.1 MGP_AJ_G0025375.1 mouse_genomes_project 2 20073651 20078878 + Yme1l1 protein_coding processed_transcript MGP_AJ_T0052890.1 MGP_AJ_G0025375.1 mouse_genomes_project 2 20097801 20100038 + Yme1l1 protein_coding processed_transcript MGP_AJ_T0017779.1 MGP_AJ_G0015401.1 mouse_genomes_project 2 69080072 69082755 + Gm13663 processed_transcript processed_transcript MGP_AJ_T0017780.1 MGP_AJ_G0015401.1 mouse_genomes_project 2 69081029 69082715 + Gm13663 processed_transcript processed_transcript MGP_AJ_T0102518.1 MGP_AJ_G0040260.1 mouse_genomes_project 2 137284346 137284575 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0056929.1 MGP_AJ_G0026306.1 mouse_genomes_project 2 117345644 117386079 + MGP_AJ_P0056929 Chp1 protein_coding protein_coding MGP_AJ_T0056930.1 MGP_AJ_G0026306.1 mouse_genomes_project 2 117345735 117370049 + Chp1 protein_coding retained_intron MGP_AJ_T0056931.1 MGP_AJ_G0026306.1 mouse_genomes_project 2 117345774 117384103 + MGP_AJ_P0056931 Chp1 protein_coding protein_coding MGP_AJ_T0056932.1 MGP_AJ_G0026306.1 mouse_genomes_project 2 117364862 117384454 + Chp1 protein_coding retained_intron MGP_AJ_T0058330.1 MGP_AJ_G0026624.1 mouse_genomes_project 2 150680992 150685564 - MGP_AJ_P0058330 Sox12 protein_coding protein_coding MGP_AJ_T0058331.1 MGP_AJ_G0026624.1 mouse_genomes_project 2 150680995 150685547 - MGP_AJ_P0058331 Sox12 protein_coding protein_coding MGP_AJ_T0099777.1 MGP_AJ_G0037743.1 mouse_genomes_project 2 111030580 111030746 + Gm26505 snRNA snRNA MGP_AJ_T0054312.1 MGP_AJ_G0025613.1 mouse_genomes_project 2 30901422 31065250 - MGP_AJ_P0054312 Mvb12b protein_coding protein_coding MGP_AJ_T0054313.1 MGP_AJ_G0025613.1 mouse_genomes_project 2 30957243 30960690 - Mvb12b protein_coding retained_intron MGP_AJ_T0054314.1 MGP_AJ_G0025613.1 mouse_genomes_project 2 30959100 31064150 - Mvb12b protein_coding processed_transcript MGP_AJ_T0054315.1 MGP_AJ_G0025613.1 mouse_genomes_project 2 30996974 31064150 - MGP_AJ_P0054315 Mvb12b protein_coding protein_coding MGP_AJ_T0054316.1 MGP_AJ_G0025613.1 mouse_genomes_project 2 31048002 31064787 - Mvb12b protein_coding processed_transcript MGP_AJ_T0101044.1 MGP_AJ_G0039010.1 mouse_genomes_project 2 69335191 69335318 - Gm26408 snoRNA snoRNA MGP_AJ_T0054522.1 MGP_AJ_G0025666.1 mouse_genomes_project 2 34393775 34395057 + MGP_AJ_P0054522 protein_coding protein_coding MGP_AJ_T0058969.1 MGP_AJ_G0026765.1 mouse_genomes_project 2 157181951 157278333 + Ppp1r16b protein_coding retained_intron MGP_AJ_T0058970.1 MGP_AJ_G0026765.1 mouse_genomes_project 2 157181951 157287957 + MGP_AJ_P0058970 Ppp1r16b protein_coding protein_coding MGP_AJ_T0058971.1 MGP_AJ_G0026765.1 mouse_genomes_project 2 157183286 157287957 + MGP_AJ_P0058971 Ppp1r16b protein_coding protein_coding MGP_AJ_T0058972.1 MGP_AJ_G0026765.1 mouse_genomes_project 2 157183672 157287957 + MGP_AJ_P0058972 Ppp1r16b protein_coding protein_coding MGP_AJ_T0058973.1 MGP_AJ_G0026765.1 mouse_genomes_project 2 157212693 157287957 + MGP_AJ_P0058973 Ppp1r16b protein_coding protein_coding MGP_AJ_T0101072.1 MGP_AJ_G0039038.1 mouse_genomes_project 2 142334786 142334924 - Gm26165 snoRNA snoRNA MGP_AJ_T0007206.1 MGP_AJ_G0005905.1 mouse_genomes_project 2 48563602 48615613 + Gm13497 lincRNA lincRNA MGP_AJ_T0013534.1 MGP_AJ_G0011629.1 mouse_genomes_project 2 48244960 48247591 + processed_pseudogene processed_pseudogene MGP_AJ_T0053033.1 MGP_AJ_G0025400.1 mouse_genomes_project 2 22164554 22176334 - MGP_AJ_P0053033 Nelfb protein_coding protein_coding MGP_AJ_T0053034.1 MGP_AJ_G0025400.1 mouse_genomes_project 2 22164555 22176334 - MGP_AJ_P0053034 Nelfb protein_coding protein_coding MGP_AJ_T0053035.1 MGP_AJ_G0025400.1 mouse_genomes_project 2 22164558 22176226 - Nelfb protein_coding retained_intron MGP_AJ_T0053036.1 MGP_AJ_G0025400.1 mouse_genomes_project 2 22164880 22168637 - Nelfb protein_coding retained_intron MGP_AJ_T0053037.1 MGP_AJ_G0025400.1 mouse_genomes_project 2 22165527 22168765 - MGP_AJ_P0053037 Nelfb protein_coding protein_coding MGP_AJ_T0053038.1 MGP_AJ_G0025400.1 mouse_genomes_project 2 22165996 22168445 - Nelfb protein_coding retained_intron MGP_AJ_T0053039.1 MGP_AJ_G0025400.1 mouse_genomes_project 2 22168734 22175571 - MGP_AJ_P0053039 Nelfb protein_coding protein_coding MGP_AJ_T0053040.1 MGP_AJ_G0025400.1 mouse_genomes_project 2 22168794 22174919 - Nelfb protein_coding processed_transcript MGP_AJ_T0053041.1 MGP_AJ_G0025400.1 mouse_genomes_project 2 22170012 22175545 - Nelfb protein_coding retained_intron MGP_AJ_T0052986.1 MGP_AJ_G0025394.1 mouse_genomes_project 2 21930874 22017204 + MGP_AJ_P0052986 Pnpla7 protein_coding protein_coding MGP_AJ_T0052987.1 MGP_AJ_G0025394.1 mouse_genomes_project 2 21930914 22017204 + MGP_AJ_P0052987 Pnpla7 protein_coding nonsense_mediated_decay MGP_AJ_T0052988.1 MGP_AJ_G0025394.1 mouse_genomes_project 2 21930929 21936824 + MGP_AJ_P0052988 Pnpla7 protein_coding protein_coding MGP_AJ_T0052989.1 MGP_AJ_G0025394.1 mouse_genomes_project 2 21930930 21952769 + MGP_AJ_P0052989 Pnpla7 protein_coding protein_coding MGP_AJ_T0052990.1 MGP_AJ_G0025394.1 mouse_genomes_project 2 21930942 21934897 + Pnpla7 protein_coding processed_transcript MGP_AJ_T0052991.1 MGP_AJ_G0025394.1 mouse_genomes_project 2 21930989 22002174 + Pnpla7 protein_coding retained_intron MGP_AJ_T0052992.1 MGP_AJ_G0025394.1 mouse_genomes_project 2 21936904 21943298 + Pnpla7 protein_coding processed_transcript MGP_AJ_T0052993.1 MGP_AJ_G0025394.1 mouse_genomes_project 2 21953123 21956105 + Pnpla7 protein_coding retained_intron MGP_AJ_T0052994.1 MGP_AJ_G0025394.1 mouse_genomes_project 2 21953591 21967727 + MGP_AJ_P0052994 Pnpla7 protein_coding protein_coding MGP_AJ_T0052995.1 MGP_AJ_G0025394.1 mouse_genomes_project 2 22002327 22017204 + Pnpla7 protein_coding retained_intron MGP_AJ_T0052996.1 MGP_AJ_G0025394.1 mouse_genomes_project 2 22014498 22015237 + Pnpla7 protein_coding retained_intron MGP_AJ_T0052997.1 MGP_AJ_G0025394.1 mouse_genomes_project 2 22014812 22016915 + MGP_AJ_P0052997 Pnpla7 protein_coding nonsense_mediated_decay MGP_AJ_T0052998.1 MGP_AJ_G0025394.1 mouse_genomes_project 2 22014867 22015483 + Pnpla7 protein_coding retained_intron MGP_AJ_T0052999.1 MGP_AJ_G0025394.1 mouse_genomes_project 2 22015054 22015998 + Pnpla7 protein_coding retained_intron MGP_AJ_T0053000.1 MGP_AJ_G0025394.1 mouse_genomes_project 2 22016300 22017002 + Pnpla7 protein_coding retained_intron MGP_AJ_T0013794.1 MGP_AJ_G0011889.1 mouse_genomes_project 2 142431156 142431559 + processed_pseudogene processed_pseudogene MGP_AJ_T0007409.1 MGP_AJ_G0006071.1 mouse_genomes_project 2 166480997 166484955 + Gm14319 lincRNA lincRNA MGP_AJ_T0058528.1 MGP_AJ_G0026687.1 mouse_genomes_project 2 153014488 153014989 - MGP_AJ_P0058528 4930519P11Rik protein_coding protein_coding MGP_AJ_T0003958.1 MGP_AJ_G0003530.1 mouse_genomes_project 2 30977736 30985504 + Nron antisense antisense MGP_AJ_T0003959.1 MGP_AJ_G0003530.1 mouse_genomes_project 2 30977748 30984368 + Nron antisense antisense MGP_AJ_T0003960.1 MGP_AJ_G0003530.1 mouse_genomes_project 2 30977779 30983351 + Nron antisense antisense MGP_AJ_T0007389.1 MGP_AJ_G0006055.1 mouse_genomes_project 2 161692660 161695834 - Gm14254 lincRNA lincRNA MGP_AJ_T0056637.1 MGP_AJ_G0026203.1 mouse_genomes_project 2 107573662 107677154 + MGP_AJ_P0056637 Lgr4 protein_coding protein_coding MGP_AJ_T0056638.1 MGP_AJ_G0026203.1 mouse_genomes_project 2 107573662 107677154 + MGP_AJ_P0056638 Lgr4 protein_coding protein_coding MGP_AJ_T0056639.1 MGP_AJ_G0026203.1 mouse_genomes_project 2 107638368 107660683 + Lgr4 protein_coding processed_transcript MGP_AJ_T0056640.1 MGP_AJ_G0026203.1 mouse_genomes_project 2 107663348 107664281 + Lgr4 protein_coding retained_intron MGP_AJ_T0055767.1 MGP_AJ_G0025917.1 mouse_genomes_project 2 83308845 83309881 + MGP_AJ_P0055767 Olfr1025-ps1 protein_coding protein_coding MGP_AJ_T0055768.1 MGP_AJ_G0025917.1 mouse_genomes_project 2 83308845 83309899 + MGP_AJ_P0055768 Olfr1025-ps1 protein_coding protein_coding MGP_AJ_T0013462.1 MGP_AJ_G0011557.1 mouse_genomes_project 2 20106751 20108394 + processed_pseudogene processed_pseudogene MGP_AJ_T0052851.1 MGP_AJ_G0025370.1 mouse_genomes_project 2 19668158 19730296 + Apbb1ip protein_coding processed_transcript MGP_AJ_T0052852.1 MGP_AJ_G0025370.1 mouse_genomes_project 2 19668158 19766363 + MGP_AJ_P0052852 Apbb1ip protein_coding protein_coding MGP_AJ_T0052853.1 MGP_AJ_G0025370.1 mouse_genomes_project 2 19668454 19746800 + Apbb1ip protein_coding processed_transcript MGP_AJ_T0052854.1 MGP_AJ_G0025370.1 mouse_genomes_project 2 19668509 19722699 + Apbb1ip protein_coding retained_intron MGP_AJ_T0053158.1 MGP_AJ_G0025423.1 mouse_genomes_project 2 22412295 22432181 + MGP_AJ_P0053158 Abca2 protein_coding protein_coding MGP_AJ_T0053159.1 MGP_AJ_G0025423.1 mouse_genomes_project 2 22424933 22426543 + Abca2 protein_coding processed_transcript MGP_AJ_T0053160.1 MGP_AJ_G0025423.1 mouse_genomes_project 2 22426573 22427439 + Abca2 protein_coding processed_transcript MGP_AJ_T0053161.1 MGP_AJ_G0025423.1 mouse_genomes_project 2 22428787 22430506 + Abca2 protein_coding processed_transcript MGP_AJ_T0053162.1 MGP_AJ_G0025423.1 mouse_genomes_project 2 22429305 22430708 + Abca2 protein_coding processed_transcript MGP_AJ_T0053163.1 MGP_AJ_G0025423.1 mouse_genomes_project 2 22429462 22430183 + Abca2 protein_coding processed_transcript MGP_AJ_T0053164.1 MGP_AJ_G0025423.1 mouse_genomes_project 2 22429483 22430117 + Abca2 protein_coding processed_transcript MGP_AJ_T0055001.1 MGP_AJ_G0025746.1 mouse_genomes_project 2 59780508 59789629 - MGP_AJ_P0055001 Gcg protein_coding protein_coding MGP_AJ_T0055002.1 MGP_AJ_G0025746.1 mouse_genomes_project 2 59781711 59789624 - MGP_AJ_P0055002 Gcg protein_coding protein_coding MGP_AJ_T0055003.1 MGP_AJ_G0025746.1 mouse_genomes_project 2 59782549 59786657 - Gcg protein_coding processed_transcript MGP_AJ_T0057015.1 MGP_AJ_G0026322.1 mouse_genomes_project 2 117984800 118010484 - Pla2g4e protein_coding retained_intron MGP_AJ_T0057016.1 MGP_AJ_G0026322.1 mouse_genomes_project 2 117984800 118057580 - MGP_AJ_P0057016 Pla2g4e protein_coding protein_coding MGP_AJ_T0057017.1 MGP_AJ_G0026322.1 mouse_genomes_project 2 117990561 118057327 - Pla2g4e protein_coding retained_intron MGP_AJ_T0057018.1 MGP_AJ_G0026322.1 mouse_genomes_project 2 118008667 118057353 - Pla2g4e protein_coding processed_transcript MGP_AJ_T0057989.1 MGP_AJ_G0026531.1 mouse_genomes_project 2 138218370 138272319 - MGP_AJ_P0057989 Esf1 protein_coding protein_coding MGP_AJ_T0057990.1 MGP_AJ_G0026531.1 mouse_genomes_project 2 138250513 138257012 - Esf1 protein_coding retained_intron MGP_AJ_T0057992.1 MGP_AJ_G0026531.1 mouse_genomes_project 2 138258592 138262341 - Esf1 protein_coding retained_intron MGP_AJ_T0057993.1 MGP_AJ_G0026531.1 mouse_genomes_project 2 138258627 138260345 - Esf1 protein_coding retained_intron MGP_AJ_T0057994.1 MGP_AJ_G0026531.1 mouse_genomes_project 2 138261220 138262341 - Esf1 protein_coding retained_intron MGP_AJ_T0056596.1 MGP_AJ_G0026194.1 mouse_genomes_project 2 103640421 103682038 - Dnajc24 protein_coding processed_transcript MGP_AJ_T0056597.1 MGP_AJ_G0026194.1 mouse_genomes_project 2 103640601 103682010 - MGP_AJ_P0056597 Dnajc24 protein_coding protein_coding MGP_AJ_T0056598.1 MGP_AJ_G0026194.1 mouse_genomes_project 2 103640649 103681977 - Dnajc24 protein_coding processed_transcript MGP_AJ_T0056599.1 MGP_AJ_G0026194.1 mouse_genomes_project 2 103644075 103680853 - Dnajc24 protein_coding processed_transcript MGP_AJ_T0007315.1 MGP_AJ_G0005993.1 mouse_genomes_project 2 115574525 115576532 - Gm28183 lincRNA lincRNA MGP_AJ_T0058297.1 MGP_AJ_G0026613.1 mouse_genomes_project 2 150188208 150222802 + MGP_AJ_P0058297 Angpt4 protein_coding protein_coding MGP_AJ_T0059677.1 MGP_AJ_G0026943.1 mouse_genomes_project 2 177228994 177232292 - MGP_AJ_P0059677 Ppp1r3d protein_coding protein_coding MGP_AJ_T0059082.1 MGP_AJ_G0026790.1 mouse_genomes_project 2 162040964 162051194 + MGP_AJ_P0059082 R3hdml protein_coding protein_coding MGP_AJ_T0055468.1 MGP_AJ_G0025844.1 mouse_genomes_project 2 74055747 74058697 + MGP_AJ_P0055468 Dfnb59 protein_coding protein_coding MGP_AJ_T0055469.1 MGP_AJ_G0025844.1 mouse_genomes_project 2 74055770 74063100 + MGP_AJ_P0055469 Dfnb59 protein_coding protein_coding MGP_AJ_T0055470.1 MGP_AJ_G0025844.1 mouse_genomes_project 2 74057544 74065801 + MGP_AJ_P0055470 Dfnb59 protein_coding protein_coding MGP_AJ_T0059605.1 MGP_AJ_G0026924.1 mouse_genomes_project 2 172245569 172252120 + MGP_AJ_P0059605 1700021F07Rik protein_coding protein_coding MGP_AJ_T0004055.1 MGP_AJ_G0003595.1 mouse_genomes_project 2 111129987 111184653 - Gm13963 antisense antisense MGP_AJ_T0102460.1 MGP_AJ_G0040202.1 mouse_genomes_project 2 33497549 33498488 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0056868.1 MGP_AJ_G0026288.1 mouse_genomes_project 2 116695344 116697434 + MGP_AJ_P0056868 Chst14 protein_coding protein_coding MGP_AJ_T0056869.1 MGP_AJ_G0026288.1 mouse_genomes_project 2 116695362 116697428 + MGP_AJ_P0056869 Chst14 protein_coding protein_coding MGP_AJ_T0101098.1 MGP_AJ_G0039064.1 mouse_genomes_project 2 165669256 165669346 + Snord12 snoRNA snoRNA MGP_AJ_T0013743.1 MGP_AJ_G0011838.1 mouse_genomes_project 2 120079288 120079638 - processed_pseudogene processed_pseudogene MGP_AJ_T0055565.1 MGP_AJ_G0025855.1 mouse_genomes_project 2 76911590 76915820 - MGP_AJ_P0055565 Neurod1 protein_coding protein_coding MGP_AJ_T0013527.1 MGP_AJ_G0011622.1 mouse_genomes_project 2 46511663 46512092 + processed_pseudogene processed_pseudogene MGP_AJ_T0053787.1 MGP_AJ_G0025536.1 mouse_genomes_project 2 27271177 27292496 - MGP_AJ_P0053787 Kyat1 protein_coding protein_coding MGP_AJ_T0053788.1 MGP_AJ_G0025536.1 mouse_genomes_project 2 27271179 27292465 - Kyat1 protein_coding processed_transcript MGP_AJ_T0053789.1 MGP_AJ_G0025536.1 mouse_genomes_project 2 27271179 27292424 - MGP_AJ_P0053789 Kyat1 protein_coding protein_coding MGP_AJ_T0053790.1 MGP_AJ_G0025536.1 mouse_genomes_project 2 27271184 27284953 - MGP_AJ_P0053790 Kyat1 protein_coding protein_coding MGP_AJ_T0053791.1 MGP_AJ_G0025536.1 mouse_genomes_project 2 27271184 27292450 - MGP_AJ_P0053791 Kyat1 protein_coding protein_coding MGP_AJ_T0053792.1 MGP_AJ_G0025536.1 mouse_genomes_project 2 27271321 27280166 - MGP_AJ_P0053792 Kyat1 protein_coding protein_coding MGP_AJ_T0053793.1 MGP_AJ_G0025536.1 mouse_genomes_project 2 27271321 27280166 - MGP_AJ_P0053793 Kyat1 protein_coding protein_coding MGP_AJ_T0053794.1 MGP_AJ_G0025536.1 mouse_genomes_project 2 27277175 27292438 - Kyat1 protein_coding processed_transcript MGP_AJ_T0058688.1 MGP_AJ_G0026718.1 mouse_genomes_project 2 154477962 154488247 + MGP_AJ_P0058688 Ergic3 protein_coding protein_coding MGP_AJ_T0058689.1 MGP_AJ_G0026718.1 mouse_genomes_project 2 154478023 154488247 + MGP_AJ_P0058689 Ergic3 protein_coding protein_coding MGP_AJ_T0058690.1 MGP_AJ_G0026718.1 mouse_genomes_project 2 154478140 154481151 + Ergic3 protein_coding retained_intron MGP_AJ_T0058691.1 MGP_AJ_G0026718.1 mouse_genomes_project 2 154478536 154487606 + MGP_AJ_P0058691 Ergic3 protein_coding protein_coding MGP_AJ_T0058692.1 MGP_AJ_G0026718.1 mouse_genomes_project 2 154480364 154488055 + MGP_AJ_P0058692 Ergic3 protein_coding protein_coding MGP_AJ_T0058693.1 MGP_AJ_G0026718.1 mouse_genomes_project 2 154486476 154488118 + Ergic3 protein_coding processed_transcript MGP_AJ_T0058694.1 MGP_AJ_G0026718.1 mouse_genomes_project 2 154487182 154488064 + Ergic3 protein_coding processed_transcript MGP_AJ_T0058695.1 MGP_AJ_G0026718.1 mouse_genomes_project 2 154487461 154488247 + Ergic3 protein_coding retained_intron MGP_AJ_T0058696.1 MGP_AJ_G0026718.1 mouse_genomes_project 2 154487513 154488247 + Ergic3 protein_coding retained_intron MGP_AJ_T0058697.1 MGP_AJ_G0026718.1 mouse_genomes_project 2 154487615 154488245 + Ergic3 protein_coding retained_intron MGP_AJ_T0017920.1 MGP_AJ_G0015473.1 mouse_genomes_project 2 173580354 173582997 - Gm14617 processed_transcript retained_intron MGP_AJ_T0017921.1 MGP_AJ_G0015473.1 mouse_genomes_project 2 173580481 173585543 - Gm14617 processed_transcript lincRNA MGP_AJ_T0017922.1 MGP_AJ_G0015473.1 mouse_genomes_project 2 173582419 173585420 - Gm14617 processed_transcript lincRNA MGP_AJ_T0013631.1 MGP_AJ_G0011726.1 mouse_genomes_project 2 80845295 80845505 + processed_pseudogene processed_pseudogene MGP_AJ_T0059323.1 MGP_AJ_G0026860.1 mouse_genomes_project 2 163947520 163955455 - MGP_AJ_P0059323 Ocstamp protein_coding protein_coding MGP_AJ_T0101100.1 MGP_AJ_G0039066.1 mouse_genomes_project 2 167529290 167529419 - Gm25214 snoRNA snoRNA MGP_AJ_T0013711.1 MGP_AJ_G0011806.1 mouse_genomes_project 2 106368149 106369140 - processed_pseudogene processed_pseudogene MGP_AJ_T0054058.1 MGP_AJ_G0025576.1 mouse_genomes_project 2 29377625 29396085 + MGP_AJ_P0054058 Pomt1 protein_coding protein_coding MGP_AJ_T0054059.1 MGP_AJ_G0025576.1 mouse_genomes_project 2 29377678 29378736 + Pomt1 protein_coding retained_intron MGP_AJ_T0054060.1 MGP_AJ_G0025576.1 mouse_genomes_project 2 29377707 29385034 + Pomt1 protein_coding retained_intron MGP_AJ_T0054061.1 MGP_AJ_G0025576.1 mouse_genomes_project 2 29377720 29396081 + Pomt1 protein_coding retained_intron MGP_AJ_T0054062.1 MGP_AJ_G0025576.1 mouse_genomes_project 2 29378072 29384659 + MGP_AJ_P0054062 Pomt1 protein_coding protein_coding MGP_AJ_T0054063.1 MGP_AJ_G0025576.1 mouse_genomes_project 2 29378374 29384749 + MGP_AJ_P0054063 Pomt1 protein_coding protein_coding MGP_AJ_T0054064.1 MGP_AJ_G0025576.1 mouse_genomes_project 2 29385395 29391946 + MGP_AJ_P0054064 Pomt1 protein_coding nonsense_mediated_decay MGP_AJ_T0054065.1 MGP_AJ_G0025576.1 mouse_genomes_project 2 29386326 29389728 + Pomt1 protein_coding retained_intron MGP_AJ_T0054066.1 MGP_AJ_G0025576.1 mouse_genomes_project 2 29388609 29392808 + Pomt1 protein_coding retained_intron MGP_AJ_T0054067.1 MGP_AJ_G0025576.1 mouse_genomes_project 2 29389699 29394865 + MGP_AJ_P0054067 Pomt1 protein_coding nonsense_mediated_decay MGP_AJ_T0054068.1 MGP_AJ_G0025576.1 mouse_genomes_project 2 29392309 29393729 + Pomt1 protein_coding retained_intron MGP_AJ_T0011518.1 MGP_AJ_G0009640.1 mouse_genomes_project 2 145422204 145422662 + Nkx2-2os misc_RNA misc_RNA MGP_AJ_T0013517.1 MGP_AJ_G0011612.1 mouse_genomes_project 2 39375372 39375605 + processed_pseudogene processed_pseudogene MGP_AJ_T0102495.1 MGP_AJ_G0040237.1 mouse_genomes_project 2 85390693 85391631 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0010358.1 MGP_AJ_G0008480.1 mouse_genomes_project 2 7534232 7534330 + Mir466d miRNA miRNA MGP_AJ_T0055944.1 MGP_AJ_G0026067.1 mouse_genomes_project 2 87279620 87281401 - MGP_AJ_P0055944 Olfr1250 protein_coding protein_coding MGP_AJ_T0054172.1 MGP_AJ_G0025591.1 mouse_genomes_project 2 29748289 29770187 + MGP_AJ_P0054172 St6galnac6 protein_coding protein_coding MGP_AJ_T0054173.1 MGP_AJ_G0025591.1 mouse_genomes_project 2 29748306 29769251 + MGP_AJ_P0054173 St6galnac6 protein_coding protein_coding MGP_AJ_T0054174.1 MGP_AJ_G0025591.1 mouse_genomes_project 2 29756657 29771470 + MGP_AJ_P0054174 St6galnac6 protein_coding protein_coding MGP_AJ_T0054175.1 MGP_AJ_G0025591.1 mouse_genomes_project 2 29756692 29771463 + MGP_AJ_P0054175 St6galnac6 protein_coding protein_coding MGP_AJ_T0054176.1 MGP_AJ_G0025591.1 mouse_genomes_project 2 29756706 29771463 + MGP_AJ_P0054176 St6galnac6 protein_coding nonsense_mediated_decay MGP_AJ_T0054177.1 MGP_AJ_G0025591.1 mouse_genomes_project 2 29757735 29771461 + MGP_AJ_P0054177 St6galnac6 protein_coding protein_coding MGP_AJ_T0054178.1 MGP_AJ_G0025591.1 mouse_genomes_project 2 29757749 29767494 + St6galnac6 protein_coding retained_intron MGP_AJ_T0054179.1 MGP_AJ_G0025591.1 mouse_genomes_project 2 29758128 29771461 + MGP_AJ_P0054179 St6galnac6 protein_coding protein_coding MGP_AJ_T0054180.1 MGP_AJ_G0025591.1 mouse_genomes_project 2 29758381 29762015 + MGP_AJ_P0054180 St6galnac6 protein_coding protein_coding MGP_AJ_T0054181.1 MGP_AJ_G0025591.1 mouse_genomes_project 2 29758677 29765560 + MGP_AJ_P0054181 St6galnac6 protein_coding protein_coding MGP_AJ_T0054182.1 MGP_AJ_G0025591.1 mouse_genomes_project 2 29758707 29765580 + MGP_AJ_P0054182 St6galnac6 protein_coding protein_coding MGP_AJ_T0055418.1 MGP_AJ_G0025824.1 mouse_genomes_project 2 72056265 72058965 + MGP_AJ_P0055418 Hoxd12 protein_coding protein_coding MGP_AJ_T0013885.1 MGP_AJ_G0011980.1 mouse_genomes_project 2 178191573 178192324 + processed_pseudogene processed_pseudogene MGP_AJ_T0011497.1 MGP_AJ_G0009619.1 mouse_genomes_project 2 42391933 42392067 + Gm27404 misc_RNA misc_RNA MGP_AJ_T0053139.1 MGP_AJ_G0025421.1 mouse_genomes_project 2 22382852 22389896 + Npdc1 protein_coding processed_transcript MGP_AJ_T0053140.1 MGP_AJ_G0025421.1 mouse_genomes_project 2 22383978 22391757 + Npdc1 protein_coding processed_transcript MGP_AJ_T0053141.1 MGP_AJ_G0025421.1 mouse_genomes_project 2 22386583 22393135 + MGP_AJ_P0053141 Npdc1 protein_coding protein_coding MGP_AJ_T0053142.1 MGP_AJ_G0025421.1 mouse_genomes_project 2 22386619 22390427 + Npdc1 protein_coding processed_transcript MGP_AJ_T0053143.1 MGP_AJ_G0025421.1 mouse_genomes_project 2 22386681 22391426 + MGP_AJ_P0053143 Npdc1 protein_coding protein_coding MGP_AJ_T0053144.1 MGP_AJ_G0025421.1 mouse_genomes_project 2 22386683 22393135 + MGP_AJ_P0053144 Npdc1 protein_coding protein_coding MGP_AJ_T0053145.1 MGP_AJ_G0025421.1 mouse_genomes_project 2 22386706 22391894 + MGP_AJ_P0053145 Npdc1 protein_coding protein_coding MGP_AJ_T0053146.1 MGP_AJ_G0025421.1 mouse_genomes_project 2 22386751 22390690 + Npdc1 protein_coding processed_transcript MGP_AJ_T0053147.1 MGP_AJ_G0025421.1 mouse_genomes_project 2 22386960 22391582 + Npdc1 protein_coding processed_transcript MGP_AJ_T0053148.1 MGP_AJ_G0025421.1 mouse_genomes_project 2 22387597 22393132 + Npdc1 protein_coding processed_transcript MGP_AJ_T0053149.1 MGP_AJ_G0025421.1 mouse_genomes_project 2 22389862 22393135 + MGP_AJ_P0053149 Npdc1 protein_coding protein_coding MGP_AJ_T0053150.1 MGP_AJ_G0025421.1 mouse_genomes_project 2 22390860 22392897 + Npdc1 protein_coding processed_transcript MGP_AJ_T0053151.1 MGP_AJ_G0025421.1 mouse_genomes_project 2 22391270 22393129 + Npdc1 protein_coding processed_transcript MGP_AJ_T0053152.1 MGP_AJ_G0025421.1 mouse_genomes_project 2 22392512 22393132 + Npdc1 protein_coding processed_transcript MGP_AJ_T0013840.1 MGP_AJ_G0011935.1 mouse_genomes_project 2 154862729 154863211 + processed_pseudogene processed_pseudogene MGP_AJ_T0057969.1 MGP_AJ_G0026524.1 mouse_genomes_project 2 134963124 134980687 - MGP_AJ_P0057969 Mkks protein_coding protein_coding MGP_AJ_T0057970.1 MGP_AJ_G0026524.1 mouse_genomes_project 2 134963124 134980694 - MGP_AJ_P0057970 Mkks protein_coding protein_coding MGP_AJ_T0057971.1 MGP_AJ_G0026524.1 mouse_genomes_project 2 134970563 134980459 - MGP_AJ_P0057971 Mkks protein_coding protein_coding MGP_AJ_T0004088.1 MGP_AJ_G0003619.1 mouse_genomes_project 2 127567779 127568801 - Gm14041 antisense antisense MGP_AJ_T0013842.1 MGP_AJ_G0011937.1 mouse_genomes_project 2 155113863 155114504 - processed_pseudogene processed_pseudogene MGP_AJ_T0052664.1 MGP_AJ_G0025336.1 mouse_genomes_project 2 10934630 11133538 - MGP_AJ_P0052664 Hacd1 protein_coding nonsense_mediated_decay MGP_AJ_T0052665.1 MGP_AJ_G0025336.1 mouse_genomes_project 2 11110574 11133369 - MGP_AJ_P0052665 Hacd1 protein_coding protein_coding MGP_AJ_T0056743.1 MGP_AJ_G0026260.1 mouse_genomes_project 2 111576099 111591367 - MGP_AJ_P0056743 Arhgap11a protein_coding protein_coding MGP_AJ_T0056744.1 MGP_AJ_G0026260.1 mouse_genomes_project 2 111576387 111591575 - MGP_AJ_P0056744 Arhgap11a protein_coding protein_coding MGP_AJ_T0004036.1 MGP_AJ_G0003585.1 mouse_genomes_project 2 88080643 88086518 + 4933423P22Rik antisense antisense MGP_AJ_T0004037.1 MGP_AJ_G0003585.1 mouse_genomes_project 2 88080657 88090389 + 4933423P22Rik antisense antisense MGP_AJ_T0058053.1 MGP_AJ_G0026547.1 mouse_genomes_project 2 142379504 142406494 - MGP_AJ_P0058053 Ovol2 protein_coding protein_coding MGP_AJ_T0058054.1 MGP_AJ_G0026547.1 mouse_genomes_project 2 142379504 142406945 - MGP_AJ_P0058054 Ovol2 protein_coding protein_coding MGP_AJ_T0058055.1 MGP_AJ_G0026547.1 mouse_genomes_project 2 142392413 142406125 - Ovol2 protein_coding processed_transcript MGP_AJ_T0102509.1 MGP_AJ_G0040251.1 mouse_genomes_project 2 88044214 88046212 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0101081.1 MGP_AJ_G0039047.1 mouse_genomes_project 2 149346104 149346240 + snoRNA snoRNA MGP_AJ_T0053331.1 MGP_AJ_G0025460.1 mouse_genomes_project 2 23365355 23369335 - Dnlz protein_coding processed_transcript MGP_AJ_T0053332.1 MGP_AJ_G0025460.1 mouse_genomes_project 2 23365355 23369345 - MGP_AJ_P0053332 Dnlz protein_coding protein_coding MGP_AJ_T0004056.1 MGP_AJ_G0003596.1 mouse_genomes_project 2 111184239 111185863 - Gm13966 antisense antisense MGP_AJ_T0055669.1 MGP_AJ_G0025876.1 mouse_genomes_project 2 82037919 82040283 + protein_coding processed_transcript MGP_AJ_T0055670.1 MGP_AJ_G0025876.1 mouse_genomes_project 2 82038386 82052145 + MGP_AJ_P0055670 protein_coding protein_coding MGP_AJ_T0102463.1 MGP_AJ_G0040205.1 mouse_genomes_project 2 33716859 33717162 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0054657.1 MGP_AJ_G0025692.1 mouse_genomes_project 2 41025516 41669069 + MGP_AJ_P0054657 Arhgap15 protein_coding protein_coding MGP_AJ_T0054658.1 MGP_AJ_G0025692.1 mouse_genomes_project 2 41025526 41660474 + MGP_AJ_P0054658 Arhgap15 protein_coding nonsense_mediated_decay MGP_AJ_T0054659.1 MGP_AJ_G0025692.1 mouse_genomes_project 2 41025561 41170867 + Arhgap15 protein_coding processed_transcript MGP_AJ_T0054660.1 MGP_AJ_G0025692.1 mouse_genomes_project 2 41025562 41660478 + MGP_AJ_P0054660 Arhgap15 protein_coding protein_coding MGP_AJ_T0054661.1 MGP_AJ_G0025692.1 mouse_genomes_project 2 41064331 41659339 + MGP_AJ_P0054661 Arhgap15 protein_coding unknown_likely_coding MGP_AJ_T0054662.1 MGP_AJ_G0025692.1 mouse_genomes_project 2 41347638 41430425 + Arhgap15 protein_coding processed_transcript MGP_AJ_T0013632.1 MGP_AJ_G0011727.1 mouse_genomes_project 2 80863121 80868222 + processed_pseudogene processed_pseudogene MGP_AJ_T0013422.1 MGP_AJ_G0011517.1 mouse_genomes_project 2 7929172 7929593 - processed_pseudogene processed_pseudogene MGP_AJ_T0058479.1 MGP_AJ_G0026672.1 mouse_genomes_project 2 152455831 152463779 + MGP_AJ_P0058479 Bpifa3 protein_coding protein_coding MGP_AJ_T0058480.1 MGP_AJ_G0026672.1 mouse_genomes_project 2 152455831 152463779 + MGP_AJ_P0058480 Bpifa3 protein_coding protein_coding MGP_AJ_T0058481.1 MGP_AJ_G0026672.1 mouse_genomes_project 2 152460971 152463042 + MGP_AJ_P0058481 Bpifa3 protein_coding nonsense_mediated_decay MGP_AJ_T0054349.1 MGP_AJ_G0025617.1 mouse_genomes_project 2 31960649 31966227 + MGP_AJ_P0054349 Hspa5 protein_coding protein_coding MGP_AJ_T0054350.1 MGP_AJ_G0025617.1 mouse_genomes_project 2 31960774 31965211 + MGP_AJ_P0054350 Hspa5 protein_coding protein_coding MGP_AJ_T0054351.1 MGP_AJ_G0025617.1 mouse_genomes_project 2 31960778 31961987 + MGP_AJ_P0054351 Hspa5 protein_coding nonsense_mediated_decay MGP_AJ_T0054352.1 MGP_AJ_G0025617.1 mouse_genomes_project 2 31961260 31962872 + Hspa5 protein_coding retained_intron MGP_AJ_T0054353.1 MGP_AJ_G0025617.1 mouse_genomes_project 2 31962345 31963013 + Hspa5 protein_coding retained_intron MGP_AJ_T0054354.1 MGP_AJ_G0025617.1 mouse_genomes_project 2 31963526 31964295 + Hspa5 protein_coding retained_intron MGP_AJ_T0017757.1 MGP_AJ_G0015387.1 mouse_genomes_project 2 29186446 29202319 - Gm16534 processed_transcript processed_transcript MGP_AJ_T0017758.1 MGP_AJ_G0015387.1 mouse_genomes_project 2 29187241 29203066 - Gm16534 processed_transcript processed_transcript MGP_AJ_T0058853.1 MGP_AJ_G0026742.1 mouse_genomes_project 2 155596680 155634652 - MGP_AJ_P0058853 Samhd1 protein_coding protein_coding MGP_AJ_T0058854.1 MGP_AJ_G0026742.1 mouse_genomes_project 2 155598522 155634480 - MGP_AJ_P0058854 Samhd1 protein_coding nonsense_mediated_decay MGP_AJ_T0058855.1 MGP_AJ_G0026742.1 mouse_genomes_project 2 155598522 155634507 - MGP_AJ_P0058855 Samhd1 protein_coding protein_coding MGP_AJ_T0058856.1 MGP_AJ_G0026742.1 mouse_genomes_project 2 155600481 155634609 - MGP_AJ_P0058856 Samhd1 protein_coding protein_coding MGP_AJ_T0058857.1 MGP_AJ_G0026742.1 mouse_genomes_project 2 155600815 155609518 - Samhd1 protein_coding retained_intron MGP_AJ_T0058858.1 MGP_AJ_G0026742.1 mouse_genomes_project 2 155602385 155634593 - MGP_AJ_P0058858 Samhd1 protein_coding protein_coding MGP_AJ_T0058859.1 MGP_AJ_G0026742.1 mouse_genomes_project 2 155608181 155609517 - Samhd1 protein_coding retained_intron MGP_AJ_T0058860.1 MGP_AJ_G0026742.1 mouse_genomes_project 2 155619004 155634324 - Samhd1 protein_coding retained_intron MGP_AJ_T0058861.1 MGP_AJ_G0026742.1 mouse_genomes_project 2 155621286 155629497 - Samhd1 protein_coding retained_intron MGP_AJ_T0017909.1 MGP_AJ_G0015466.1 mouse_genomes_project 2 164419812 164421163 + BC046401 processed_transcript processed_transcript MGP_AJ_T0013750.1 MGP_AJ_G0011845.1 mouse_genomes_project 2 126589635 126589909 - processed_pseudogene processed_pseudogene MGP_AJ_T0017821.1 MGP_AJ_G0015427.1 mouse_genomes_project 2 104320782 104321257 - BB218582 processed_transcript processed_transcript MGP_AJ_T0017822.1 MGP_AJ_G0015427.1 mouse_genomes_project 2 104320785 104328232 - BB218582 processed_transcript processed_transcript MGP_AJ_T0017823.1 MGP_AJ_G0015427.1 mouse_genomes_project 2 104325079 104328202 - BB218582 processed_transcript processed_transcript MGP_AJ_T0003966.1 MGP_AJ_G0003536.1 mouse_genomes_project 2 35580755 35585156 - Gm13584 antisense antisense MGP_AJ_T0101052.1 MGP_AJ_G0039018.1 mouse_genomes_project 2 94862161 94862290 + Gm22313 snoRNA snoRNA MGP_AJ_T0010465.1 MGP_AJ_G0008587.1 mouse_genomes_project 2 151164129 151164189 + Mir5622 miRNA miRNA MGP_AJ_T0101774.1 MGP_AJ_G0039696.1 mouse_genomes_project 2 148500093 148500773 + transcribed_processed_pseudogene processed_transcript MGP_AJ_T0101775.1 MGP_AJ_G0039696.1 mouse_genomes_project 2 148500326 148501082 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0054271.1 MGP_AJ_G0025606.1 mouse_genomes_project 2 30131344 30140405 - Slc2a8 protein_coding retained_intron MGP_AJ_T0054272.1 MGP_AJ_G0025606.1 mouse_genomes_project 2 30131344 30140419 - MGP_AJ_P0054272 Slc2a8 protein_coding protein_coding MGP_AJ_T0054273.1 MGP_AJ_G0025606.1 mouse_genomes_project 2 30131939 30140354 - MGP_AJ_P0054273 Slc2a8 protein_coding nonsense_mediated_decay MGP_AJ_T0054274.1 MGP_AJ_G0025606.1 mouse_genomes_project 2 30131939 30140354 - MGP_AJ_P0054274 Slc2a8 protein_coding nonsense_mediated_decay MGP_AJ_T0054275.1 MGP_AJ_G0025606.1 mouse_genomes_project 2 30131939 30140354 - MGP_AJ_P0054275 Slc2a8 protein_coding protein_coding MGP_AJ_T0054276.1 MGP_AJ_G0025606.1 mouse_genomes_project 2 30134281 30140408 - MGP_AJ_P0054276 Slc2a8 protein_coding protein_coding MGP_AJ_T0054277.1 MGP_AJ_G0025606.1 mouse_genomes_project 2 30135265 30140356 - Slc2a8 protein_coding retained_intron MGP_AJ_T0054278.1 MGP_AJ_G0025606.1 mouse_genomes_project 2 30139822 30140420 - Slc2a8 protein_coding processed_transcript MGP_AJ_T0055939.1 MGP_AJ_G0026064.1 mouse_genomes_project 2 87215556 87216501 - MGP_AJ_P0055939 Olfr1246 protein_coding protein_coding MGP_AJ_T0001050.1 MGP_AJ_G0000981.1 mouse_genomes_project 2 12025904 12027841 + TEC TEC MGP_AJ_T0055902.1 MGP_AJ_G0026036.1 mouse_genomes_project 2 86616180 86617116 + MGP_AJ_P0055902 Olfr1212 protein_coding protein_coding MGP_AJ_T0057529.1 MGP_AJ_G0026424.1 mouse_genomes_project 2 125423418 125431742 - MGP_AJ_P0057529 Fahd2a protein_coding protein_coding MGP_AJ_T0057530.1 MGP_AJ_G0026424.1 mouse_genomes_project 2 125423419 125431757 - Fahd2a protein_coding retained_intron MGP_AJ_T0057531.1 MGP_AJ_G0026424.1 mouse_genomes_project 2 125423474 125425523 - Fahd2a protein_coding processed_transcript MGP_AJ_T0057532.1 MGP_AJ_G0026424.1 mouse_genomes_project 2 125424040 125431749 - Fahd2a protein_coding processed_transcript MGP_AJ_T0057533.1 MGP_AJ_G0026424.1 mouse_genomes_project 2 125425325 125431672 - Fahd2a protein_coding processed_transcript MGP_AJ_T0057534.1 MGP_AJ_G0026424.1 mouse_genomes_project 2 125425614 125431708 - Fahd2a protein_coding retained_intron MGP_AJ_T0057535.1 MGP_AJ_G0026424.1 mouse_genomes_project 2 125427634 125431700 - Fahd2a protein_coding processed_transcript MGP_AJ_T0056305.1 MGP_AJ_G0026138.1 mouse_genomes_project 2 91283876 91325519 + MGP_AJ_P0056305 Alx4 protein_coding protein_coding MGP_AJ_T0056306.1 MGP_AJ_G0026138.1 mouse_genomes_project 2 91283880 91325519 + MGP_AJ_P0056306 Alx4 protein_coding protein_coding MGP_AJ_T0007390.1 MGP_AJ_G0006056.1 mouse_genomes_project 2 163082514 163091696 + Gm14317 lincRNA lincRNA MGP_AJ_T0010457.1 MGP_AJ_G0008579.1 mouse_genomes_project 2 129087383 129087463 - Mir6973b miRNA miRNA MGP_AJ_T0007146.1 MGP_AJ_G0005859.1 mouse_genomes_project 2 8373497 8428221 - 8030442B05Rik lincRNA lincRNA MGP_AJ_T0017879.1 MGP_AJ_G0015453.1 mouse_genomes_project 2 148811532 148815554 + Gm14123 processed_transcript processed_transcript MGP_AJ_T0007365.1 MGP_AJ_G0006034.1 mouse_genomes_project 2 150028866 150031267 - 4930556L07Rik lincRNA lincRNA MGP_AJ_T0007410.1 MGP_AJ_G0006072.1 mouse_genomes_project 2 166780082 166785607 - Gm14235 lincRNA lincRNA MGP_AJ_T0053779.1 MGP_AJ_G0025535.1 mouse_genomes_project 2 27257914 27262891 - D2Wsu81e protein_coding retained_intron MGP_AJ_T0053780.1 MGP_AJ_G0025535.1 mouse_genomes_project 2 27257914 27262904 - D2Wsu81e protein_coding retained_intron MGP_AJ_T0053781.1 MGP_AJ_G0025535.1 mouse_genomes_project 2 27257929 27261967 - D2Wsu81e protein_coding retained_intron MGP_AJ_T0053782.1 MGP_AJ_G0025535.1 mouse_genomes_project 2 27257932 27262446 - D2Wsu81e protein_coding retained_intron MGP_AJ_T0053783.1 MGP_AJ_G0025535.1 mouse_genomes_project 2 27257932 27262912 - MGP_AJ_P0053783 D2Wsu81e protein_coding protein_coding MGP_AJ_T0053784.1 MGP_AJ_G0025535.1 mouse_genomes_project 2 27257934 27262921 - D2Wsu81e protein_coding retained_intron MGP_AJ_T0053785.1 MGP_AJ_G0025535.1 mouse_genomes_project 2 27259392 27262427 - D2Wsu81e protein_coding processed_transcript MGP_AJ_T0053786.1 MGP_AJ_G0025535.1 mouse_genomes_project 2 27260824 27262917 - D2Wsu81e protein_coding retained_intron MGP_AJ_T0055152.1 MGP_AJ_G0025777.1 mouse_genomes_project 2 66942107 66962392 + MGP_AJ_P0055152 Bbs5 protein_coding nonsense_mediated_decay MGP_AJ_T0055153.1 MGP_AJ_G0025777.1 mouse_genomes_project 2 66942144 66962645 + MGP_AJ_P0055153 Bbs5 protein_coding protein_coding MGP_AJ_T0055154.1 MGP_AJ_G0025777.1 mouse_genomes_project 2 66942152 66962645 + MGP_AJ_P0055154 Bbs5 protein_coding protein_coding MGP_AJ_T0055155.1 MGP_AJ_G0025777.1 mouse_genomes_project 2 66942166 66944714 + Bbs5 protein_coding retained_intron MGP_AJ_T0055156.1 MGP_AJ_G0025777.1 mouse_genomes_project 2 66942189 66949355 + Bbs5 protein_coding retained_intron MGP_AJ_T0055157.1 MGP_AJ_G0025777.1 mouse_genomes_project 2 66942199 66948199 + Bbs5 protein_coding retained_intron MGP_AJ_T0055158.1 MGP_AJ_G0025777.1 mouse_genomes_project 2 66950530 66960102 + Bbs5 protein_coding retained_intron MGP_AJ_T0055159.1 MGP_AJ_G0025777.1 mouse_genomes_project 2 66952057 66962645 + MGP_AJ_P0055159 Bbs5 protein_coding protein_coding MGP_AJ_T0007145.1 MGP_AJ_G0005858.1 mouse_genomes_project 2 8347300 8351783 - Gm38171 lincRNA lincRNA MGP_AJ_T0058560.1 MGP_AJ_G0026695.1 mouse_genomes_project 2 153582091 153587995 + Itch protein_coding retained_intron MGP_AJ_T0058561.1 MGP_AJ_G0026695.1 mouse_genomes_project 2 153582091 153620259 + Itch protein_coding retained_intron MGP_AJ_T0058562.1 MGP_AJ_G0026695.1 mouse_genomes_project 2 153582091 153673943 + MGP_AJ_P0058562 Itch protein_coding protein_coding MGP_AJ_T0058563.1 MGP_AJ_G0026695.1 mouse_genomes_project 2 153582106 153623551 + Itch protein_coding retained_intron MGP_AJ_T0058564.1 MGP_AJ_G0026695.1 mouse_genomes_project 2 153582113 153649347 + Itch protein_coding processed_transcript MGP_AJ_T0058565.1 MGP_AJ_G0026695.1 mouse_genomes_project 2 153582141 153673941 + MGP_AJ_P0058565 Itch protein_coding protein_coding MGP_AJ_T0058566.1 MGP_AJ_G0026695.1 mouse_genomes_project 2 153582143 153659312 + Itch protein_coding retained_intron MGP_AJ_T0056162.1 MGP_AJ_G0026114.1 mouse_genomes_project 2 89263277 89269396 - MGP_AJ_P0056162 Zfp408 protein_coding protein_coding MGP_AJ_T0056163.1 MGP_AJ_G0026114.1 mouse_genomes_project 2 89263297 89269408 - MGP_AJ_P0056163 Zfp408 protein_coding protein_coding MGP_AJ_T0056164.1 MGP_AJ_G0026114.1 mouse_genomes_project 2 89265891 89267850 - Zfp408 protein_coding retained_intron MGP_AJ_T0056165.1 MGP_AJ_G0026114.1 mouse_genomes_project 2 89267281 89269376 - MGP_AJ_P0056165 Zfp408 protein_coding nonsense_mediated_decay MGP_AJ_T0056166.1 MGP_AJ_G0026114.1 mouse_genomes_project 2 89267629 89269360 - Zfp408 protein_coding processed_transcript MGP_AJ_T0056167.1 MGP_AJ_G0026114.1 mouse_genomes_project 2 89268552 89269377 - Zfp408 protein_coding processed_transcript MGP_AJ_T0054039.1 MGP_AJ_G0025573.1 mouse_genomes_project 2 29186415 29222746 - MGP_AJ_P0054039 Fam78a protein_coding nonsense_mediated_decay MGP_AJ_T0054042.1 MGP_AJ_G0025573.1 mouse_genomes_project 2 29205021 29221862 - MGP_AJ_P0054042 Fam78a protein_coding protein_coding MGP_AJ_T0054043.1 MGP_AJ_G0025573.1 mouse_genomes_project 2 29207574 29217431 - Fam78a protein_coding processed_transcript MGP_AJ_T0054044.1 MGP_AJ_G0025573.1 mouse_genomes_project 2 29221350 29222918 - Fam78a protein_coding processed_transcript MGP_AJ_T0054521.1 MGP_AJ_G0025665.1 mouse_genomes_project 2 34393358 34394391 + MGP_AJ_P0054521 protein_coding protein_coding MGP_AJ_T0056717.1 MGP_AJ_G0026253.1 mouse_genomes_project 2 110220330 110221929 - MGP_AJ_P0056717 Chrm5 protein_coding protein_coding MGP_AJ_T0004176.1 MGP_AJ_G0003687.1 mouse_genomes_project 2 169257912 169260292 + Gm14637 antisense antisense MGP_AJ_T0007437.1 MGP_AJ_G0006096.1 mouse_genomes_project 2 178242195 178244134 + 4930591A17Rik lincRNA lincRNA MGP_AJ_T0098949.1 MGP_AJ_G0036927.1 mouse_genomes_project 2 112702201 112703221 + Gm28492 sense_intronic sense_intronic MGP_AJ_T0057279.1 MGP_AJ_G0026361.1 mouse_genomes_project 2 119722018 119791807 + MGP_AJ_P0057279 Casc4 protein_coding protein_coding MGP_AJ_T0057280.1 MGP_AJ_G0026361.1 mouse_genomes_project 2 119722018 119791807 + MGP_AJ_P0057280 Casc4 protein_coding protein_coding MGP_AJ_T0057281.1 MGP_AJ_G0026361.1 mouse_genomes_project 2 119722177 119755499 + Casc4 protein_coding retained_intron MGP_AJ_T0057282.1 MGP_AJ_G0026361.1 mouse_genomes_project 2 119722178 119761554 + Casc4 protein_coding retained_intron MGP_AJ_T0057283.1 MGP_AJ_G0026361.1 mouse_genomes_project 2 119722178 119791692 + MGP_AJ_P0057283 Casc4 protein_coding protein_coding MGP_AJ_T0057284.1 MGP_AJ_G0026361.1 mouse_genomes_project 2 119722178 119791654 + MGP_AJ_P0057284 Casc4 protein_coding protein_coding MGP_AJ_T0057285.1 MGP_AJ_G0026361.1 mouse_genomes_project 2 119722753 119789438 + Casc4 protein_coding processed_transcript MGP_AJ_T0057286.1 MGP_AJ_G0026361.1 mouse_genomes_project 2 119754096 119789403 + MGP_AJ_P0057286 Casc4 protein_coding protein_coding MGP_AJ_T0059661.1 MGP_AJ_G0026938.1 mouse_genomes_project 2 173386965 173453835 + MGP_AJ_P0059661 Zfp831 protein_coding protein_coding MGP_AJ_T0060022.1 MGP_AJ_G0027006.1 mouse_genomes_project 2 180848928 180855096 + MGP_AJ_P0060022 Gm14496 protein_coding protein_coding MGP_AJ_T0055852.1 MGP_AJ_G0025990.1 mouse_genomes_project 2 85256869 85257802 - MGP_AJ_P0055852 Olfr1137 protein_coding protein_coding MGP_AJ_T0055423.1 MGP_AJ_G0025828.1 mouse_genomes_project 2 72085915 72088100 + MGP_AJ_P0055423 Hoxd8 protein_coding protein_coding MGP_AJ_T0055424.1 MGP_AJ_G0025828.1 mouse_genomes_project 2 72086205 72089221 + MGP_AJ_P0055424 Hoxd8 protein_coding protein_coding MGP_AJ_T0055425.1 MGP_AJ_G0025828.1 mouse_genomes_project 2 72086451 72088595 + MGP_AJ_P0055425 Hoxd8 protein_coding protein_coding MGP_AJ_T0007224.1 MGP_AJ_G0005921.1 mouse_genomes_project 2 64948069 64958316 - Gm26743 lincRNA lincRNA MGP_AJ_T0013628.1 MGP_AJ_G0011723.1 mouse_genomes_project 2 80064352 80064692 + processed_pseudogene processed_pseudogene MGP_AJ_T0099745.1 MGP_AJ_G0037711.1 mouse_genomes_project 2 8118153 8118286 - Gm26478 snRNA snRNA MGP_AJ_T0057620.1 MGP_AJ_G0026449.1 mouse_genomes_project 2 127205218 127217971 + MGP_AJ_P0057620 Slc20a1 protein_coding protein_coding MGP_AJ_T0057621.1 MGP_AJ_G0026449.1 mouse_genomes_project 2 127205255 127207540 + Slc20a1 protein_coding retained_intron MGP_AJ_T0057622.1 MGP_AJ_G0026449.1 mouse_genomes_project 2 127205257 127211466 + Slc20a1 protein_coding processed_transcript MGP_AJ_T0057623.1 MGP_AJ_G0026449.1 mouse_genomes_project 2 127205257 127207538 + Slc20a1 protein_coding retained_intron MGP_AJ_T0057624.1 MGP_AJ_G0026449.1 mouse_genomes_project 2 127205257 127210675 + MGP_AJ_P0057624 Slc20a1 protein_coding unknown_likely_coding MGP_AJ_T0057625.1 MGP_AJ_G0026449.1 mouse_genomes_project 2 127205598 127206178 + MGP_AJ_P0057625 Slc20a1 protein_coding protein_coding MGP_AJ_T0057626.1 MGP_AJ_G0026449.1 mouse_genomes_project 2 127205729 127217964 + MGP_AJ_P0057626 Slc20a1 protein_coding protein_coding MGP_AJ_T0057627.1 MGP_AJ_G0026449.1 mouse_genomes_project 2 127212674 127214613 + Slc20a1 protein_coding retained_intron MGP_AJ_T0057628.1 MGP_AJ_G0026449.1 mouse_genomes_project 2 127213714 127214381 + Slc20a1 protein_coding retained_intron MGP_AJ_T0013727.1 MGP_AJ_G0011822.1 mouse_genomes_project 2 112454940 112455722 + processed_pseudogene processed_pseudogene MGP_AJ_T0057804.1 MGP_AJ_G0026491.1 mouse_genomes_project 2 129253511 129257884 + Ap5s1 protein_coding processed_transcript MGP_AJ_T0057805.1 MGP_AJ_G0026491.1 mouse_genomes_project 2 129253519 129259491 + MGP_AJ_P0057805 Ap5s1 protein_coding protein_coding MGP_AJ_T0057806.1 MGP_AJ_G0026491.1 mouse_genomes_project 2 129256806 129259757 + Ap5s1 protein_coding processed_transcript MGP_AJ_T0057807.1 MGP_AJ_G0026491.1 mouse_genomes_project 2 129256833 129259349 + Ap5s1 protein_coding processed_transcript MGP_AJ_T0057808.1 MGP_AJ_G0026491.1 mouse_genomes_project 2 129256860 129260266 + MGP_AJ_P0057808 Ap5s1 protein_coding protein_coding MGP_AJ_T0057809.1 MGP_AJ_G0026491.1 mouse_genomes_project 2 129256876 129260269 + MGP_AJ_P0057809 Ap5s1 protein_coding protein_coding MGP_AJ_T0057810.1 MGP_AJ_G0026491.1 mouse_genomes_project 2 129256876 129260269 + MGP_AJ_P0057810 Ap5s1 protein_coding protein_coding MGP_AJ_T0057811.1 MGP_AJ_G0026491.1 mouse_genomes_project 2 129257040 129259619 + MGP_AJ_P0057811 Ap5s1 protein_coding protein_coding MGP_AJ_T0055932.1 MGP_AJ_G0026060.1 mouse_genomes_project 2 87104135 87105080 - MGP_AJ_P0055932 Olfr1241 protein_coding protein_coding MGP_AJ_T0013693.1 MGP_AJ_G0011788.1 mouse_genomes_project 2 101470290 101470574 + processed_pseudogene processed_pseudogene MGP_AJ_T0056293.1 MGP_AJ_G0026136.1 mouse_genomes_project 2 91057613 91100511 - MGP_AJ_P0056293 Cd82 protein_coding protein_coding MGP_AJ_T0056294.1 MGP_AJ_G0026136.1 mouse_genomes_project 2 91057613 91100602 - MGP_AJ_P0056294 Cd82 protein_coding protein_coding MGP_AJ_T0056295.1 MGP_AJ_G0026136.1 mouse_genomes_project 2 91057618 91101046 - MGP_AJ_P0056295 Cd82 protein_coding protein_coding MGP_AJ_T0056296.1 MGP_AJ_G0026136.1 mouse_genomes_project 2 91057656 91058790 - Cd82 protein_coding processed_transcript MGP_AJ_T0056297.1 MGP_AJ_G0026136.1 mouse_genomes_project 2 91058332 91090795 - MGP_AJ_P0056297 Cd82 protein_coding protein_coding MGP_AJ_T0056298.1 MGP_AJ_G0026136.1 mouse_genomes_project 2 91059159 91100486 - MGP_AJ_P0056298 Cd82 protein_coding protein_coding MGP_AJ_T0056299.1 MGP_AJ_G0026136.1 mouse_genomes_project 2 91060329 91090799 - MGP_AJ_P0056299 Cd82 protein_coding protein_coding MGP_AJ_T0056300.1 MGP_AJ_G0026136.1 mouse_genomes_project 2 91060329 91100012 - MGP_AJ_P0056300 Cd82 protein_coding protein_coding MGP_AJ_T0056301.1 MGP_AJ_G0026136.1 mouse_genomes_project 2 91068233 91101240 - MGP_AJ_P0056301 Cd82 protein_coding protein_coding MGP_AJ_T0056302.1 MGP_AJ_G0026136.1 mouse_genomes_project 2 91071584 91100543 - Cd82 protein_coding processed_transcript MGP_AJ_T0056303.1 MGP_AJ_G0026136.1 mouse_genomes_project 2 91075492 91101012 - MGP_AJ_P0056303 Cd82 protein_coding protein_coding MGP_AJ_T0013695.1 MGP_AJ_G0011790.1 mouse_genomes_project 2 101517771 101518032 + processed_pseudogene processed_pseudogene MGP_AJ_T0013536.1 MGP_AJ_G0011631.1 mouse_genomes_project 2 48876212 48877315 + processed_pseudogene processed_pseudogene MGP_AJ_T0004067.1 MGP_AJ_G0003603.1 mouse_genomes_project 2 116520203 116523264 + Inafm2 antisense antisense MGP_AJ_T0013699.1 MGP_AJ_G0011794.1 mouse_genomes_project 2 102483082 102485772 + processed_pseudogene processed_pseudogene MGP_AJ_T0058372.1 MGP_AJ_G0026645.1 mouse_genomes_project 2 151146868 151194434 + MGP_AJ_P0058372 Tpx2 protein_coding protein_coding MGP_AJ_T0058373.1 MGP_AJ_G0026645.1 mouse_genomes_project 2 151146868 151194434 + MGP_AJ_P0058373 Tpx2 protein_coding protein_coding MGP_AJ_T0058374.1 MGP_AJ_G0026645.1 mouse_genomes_project 2 151146882 151193752 + MGP_AJ_P0058374 Tpx2 protein_coding protein_coding MGP_AJ_T0058375.1 MGP_AJ_G0026645.1 mouse_genomes_project 2 151146899 151193752 + MGP_AJ_P0058375 Tpx2 protein_coding protein_coding MGP_AJ_T0058376.1 MGP_AJ_G0026645.1 mouse_genomes_project 2 151146986 151153891 + Tpx2 protein_coding processed_transcript MGP_AJ_T0058377.1 MGP_AJ_G0026645.1 mouse_genomes_project 2 151168873 151180111 + Tpx2 protein_coding retained_intron MGP_AJ_T0058378.1 MGP_AJ_G0026645.1 mouse_genomes_project 2 151181583 151183770 + Tpx2 protein_coding retained_intron MGP_AJ_T0017774.1 MGP_AJ_G0015397.1 mouse_genomes_project 2 56632215 56636396 - 5330411J11Rik processed_transcript processed_transcript MGP_AJ_T0017775.1 MGP_AJ_G0015397.1 mouse_genomes_project 2 56633506 56637185 - 5330411J11Rik processed_transcript processed_transcript MGP_AJ_T0053363.1 MGP_AJ_G0025464.1 mouse_genomes_project 2 23406651 23414435 + MGP_AJ_P0053363 Pmpca protein_coding protein_coding MGP_AJ_T0053364.1 MGP_AJ_G0025464.1 mouse_genomes_project 2 23406660 23411254 + MGP_AJ_P0053364 Pmpca protein_coding protein_coding MGP_AJ_T0053365.1 MGP_AJ_G0025464.1 mouse_genomes_project 2 23406666 23407608 + Pmpca protein_coding processed_transcript MGP_AJ_T0053366.1 MGP_AJ_G0025464.1 mouse_genomes_project 2 23406666 23407515 + Pmpca protein_coding processed_transcript MGP_AJ_T0053367.1 MGP_AJ_G0025464.1 mouse_genomes_project 2 23406668 23409279 + Pmpca protein_coding processed_transcript MGP_AJ_T0053368.1 MGP_AJ_G0025464.1 mouse_genomes_project 2 23408239 23409711 + Pmpca protein_coding processed_transcript MGP_AJ_T0013405.1 MGP_AJ_G0011500.1 mouse_genomes_project 2 481397 481713 + processed_pseudogene processed_pseudogene MGP_AJ_T0010480.1 MGP_AJ_G0008602.1 mouse_genomes_project 2 166811490 166811585 - Gm24561 miRNA miRNA MGP_AJ_T0057903.1 MGP_AJ_G0026510.1 mouse_genomes_project 2 130860401 130866762 - Trmt6 protein_coding retained_intron MGP_AJ_T0057904.1 MGP_AJ_G0026510.1 mouse_genomes_project 2 130860401 130872181 - Trmt6 protein_coding processed_transcript MGP_AJ_T0057905.1 MGP_AJ_G0026510.1 mouse_genomes_project 2 130860401 130872180 - MGP_AJ_P0057905 Trmt6 protein_coding protein_coding MGP_AJ_T0057906.1 MGP_AJ_G0026510.1 mouse_genomes_project 2 130866543 130871884 - Trmt6 protein_coding processed_transcript MGP_AJ_T0057907.1 MGP_AJ_G0026510.1 mouse_genomes_project 2 130866568 130868634 - Trmt6 protein_coding processed_transcript MGP_AJ_T0057908.1 MGP_AJ_G0026510.1 mouse_genomes_project 2 130867893 130872139 - Trmt6 protein_coding processed_transcript MGP_AJ_T0053999.1 MGP_AJ_G0025566.1 mouse_genomes_project 2 28790062 28800488 + MGP_AJ_P0053999 Exosc2 protein_coding protein_coding MGP_AJ_T0054000.1 MGP_AJ_G0025566.1 mouse_genomes_project 2 28790066 28800144 + Exosc2 protein_coding retained_intron MGP_AJ_T0054001.1 MGP_AJ_G0025566.1 mouse_genomes_project 2 28790081 28799683 + MGP_AJ_P0054001 Exosc2 protein_coding protein_coding MGP_AJ_T0054002.1 MGP_AJ_G0025566.1 mouse_genomes_project 2 28790090 28797618 + MGP_AJ_P0054002 Exosc2 protein_coding nonsense_mediated_decay MGP_AJ_T0054003.1 MGP_AJ_G0025566.1 mouse_genomes_project 2 28792413 28797691 + Exosc2 protein_coding processed_transcript MGP_AJ_T0054004.1 MGP_AJ_G0025566.1 mouse_genomes_project 2 28797441 28799676 + Exosc2 protein_coding retained_intron MGP_AJ_T0059129.1 MGP_AJ_G0026804.1 mouse_genomes_project 2 162700312 162706724 - MGP_AJ_P0059129 Wfdc5 protein_coding protein_coding MGP_AJ_T0059130.1 MGP_AJ_G0026804.1 mouse_genomes_project 2 162701452 162706580 - MGP_AJ_P0059130 Wfdc5 protein_coding protein_coding MGP_AJ_T0058352.1 MGP_AJ_G0026640.1 mouse_genomes_project 2 150951281 150997876 + MGP_AJ_P0058352 H13 protein_coding unknown_likely_coding MGP_AJ_T0058353.1 MGP_AJ_G0026640.1 mouse_genomes_project 2 150963212 151002400 + MGP_AJ_P0058353 H13 protein_coding protein_coding MGP_AJ_T0058354.1 MGP_AJ_G0026640.1 mouse_genomes_project 2 150963237 150977193 + H13 protein_coding retained_intron MGP_AJ_T0058355.1 MGP_AJ_G0026640.1 mouse_genomes_project 2 150963239 150980453 + MGP_AJ_P0058355 H13 protein_coding protein_coding MGP_AJ_T0058356.1 MGP_AJ_G0026640.1 mouse_genomes_project 2 150963285 150997859 + MGP_AJ_P0058356 H13 protein_coding protein_coding MGP_AJ_T0058358.1 MGP_AJ_G0026640.1 mouse_genomes_project 2 150985590 150989972 + H13 protein_coding retained_intron MGP_AJ_T0057788.1 MGP_AJ_G0026487.1 mouse_genomes_project 2 129192826 129206521 - MGP_AJ_P0057788 1700037H04Rik protein_coding nonsense_mediated_decay MGP_AJ_T0057789.1 MGP_AJ_G0026487.1 mouse_genomes_project 2 129192827 129195531 - 1700037H04Rik protein_coding retained_intron MGP_AJ_T0057790.1 MGP_AJ_G0026487.1 mouse_genomes_project 2 129192827 129206507 - MGP_AJ_P0057790 1700037H04Rik protein_coding protein_coding MGP_AJ_T0057791.1 MGP_AJ_G0026487.1 mouse_genomes_project 2 129193296 129206511 - MGP_AJ_P0057791 1700037H04Rik protein_coding nonsense_mediated_decay MGP_AJ_T0057792.1 MGP_AJ_G0026487.1 mouse_genomes_project 2 129193306 129206568 - MGP_AJ_P0057792 1700037H04Rik protein_coding protein_coding MGP_AJ_T0057793.1 MGP_AJ_G0026487.1 mouse_genomes_project 2 129193663 129206529 - MGP_AJ_P0057793 1700037H04Rik protein_coding protein_coding MGP_AJ_T0057794.1 MGP_AJ_G0026487.1 mouse_genomes_project 2 129194783 129206529 - 1700037H04Rik protein_coding processed_transcript MGP_AJ_T0056363.1 MGP_AJ_G0026147.1 mouse_genomes_project 2 92054844 92078957 - MGP_AJ_P0056363 Api5 protein_coding protein_coding MGP_AJ_T0056364.1 MGP_AJ_G0026147.1 mouse_genomes_project 2 92059404 92078933 - Api5 protein_coding processed_transcript MGP_AJ_T0056365.1 MGP_AJ_G0026147.1 mouse_genomes_project 2 92063282 92079101 - Api5 protein_coding retained_intron MGP_AJ_T0056366.1 MGP_AJ_G0026147.1 mouse_genomes_project 2 92068021 92072948 - Api5 protein_coding processed_transcript MGP_AJ_T0056899.1 MGP_AJ_G0026297.1 mouse_genomes_project 2 116984106 116986029 + Zfyve19 protein_coding processed_transcript MGP_AJ_T0056900.1 MGP_AJ_G0026297.1 mouse_genomes_project 2 116984501 116986092 + Zfyve19 protein_coding processed_transcript MGP_AJ_T0056901.1 MGP_AJ_G0026297.1 mouse_genomes_project 2 116984521 116987255 + Zfyve19 protein_coding processed_transcript MGP_AJ_T0056902.1 MGP_AJ_G0026297.1 mouse_genomes_project 2 116984530 116986633 + Zfyve19 protein_coding retained_intron MGP_AJ_T0056903.1 MGP_AJ_G0026297.1 mouse_genomes_project 2 116984619 116993493 + MGP_AJ_P0056903 Zfyve19 protein_coding protein_coding MGP_AJ_T0056904.1 MGP_AJ_G0026297.1 mouse_genomes_project 2 116986327 116991328 + Zfyve19 protein_coding retained_intron MGP_AJ_T0056905.1 MGP_AJ_G0026297.1 mouse_genomes_project 2 116986951 116987209 + Zfyve19 protein_coding processed_transcript MGP_AJ_T0056906.1 MGP_AJ_G0026297.1 mouse_genomes_project 2 116987130 116991350 + Zfyve19 protein_coding retained_intron MGP_AJ_T0056907.1 MGP_AJ_G0026297.1 mouse_genomes_project 2 116990894 116992836 + Zfyve19 protein_coding retained_intron MGP_AJ_T0056908.1 MGP_AJ_G0026297.1 mouse_genomes_project 2 116992703 116993488 + Zfyve19 protein_coding retained_intron MGP_AJ_T0007220.1 MGP_AJ_G0005917.1 mouse_genomes_project 2 61673334 61684987 - Gm13575 lincRNA lincRNA MGP_AJ_T0057888.1 MGP_AJ_G0026507.1 mouse_genomes_project 2 130578695 130628214 - MGP_AJ_P0057888 Gpcpd1 protein_coding protein_coding MGP_AJ_T0057889.1 MGP_AJ_G0026507.1 mouse_genomes_project 2 130578702 130591652 - Gpcpd1 protein_coding retained_intron MGP_AJ_T0057890.1 MGP_AJ_G0026507.1 mouse_genomes_project 2 130578702 130628195 - MGP_AJ_P0057890 Gpcpd1 protein_coding nonsense_mediated_decay MGP_AJ_T0057891.1 MGP_AJ_G0026507.1 mouse_genomes_project 2 130578702 130628208 - MGP_AJ_P0057891 Gpcpd1 protein_coding nonsense_mediated_decay MGP_AJ_T0057892.1 MGP_AJ_G0026507.1 mouse_genomes_project 2 130578702 130628138 - MGP_AJ_P0057892 Gpcpd1 protein_coding nonsense_mediated_decay MGP_AJ_T0057893.1 MGP_AJ_G0026507.1 mouse_genomes_project 2 130583772 130587748 - MGP_AJ_P0057893 Gpcpd1 protein_coding nonsense_mediated_decay MGP_AJ_T0057894.1 MGP_AJ_G0026507.1 mouse_genomes_project 2 130600082 130628147 - MGP_AJ_P0057894 Gpcpd1 protein_coding protein_coding MGP_AJ_T0057895.1 MGP_AJ_G0026507.1 mouse_genomes_project 2 130603536 130637689 - MGP_AJ_P0057895 Gpcpd1 protein_coding protein_coding MGP_AJ_T0057896.1 MGP_AJ_G0026507.1 mouse_genomes_project 2 130603648 130628177 - Gpcpd1 protein_coding processed_transcript MGP_AJ_T0057897.1 MGP_AJ_G0026507.1 mouse_genomes_project 2 130614124 130628206 - Gpcpd1 protein_coding processed_transcript MGP_AJ_T0001052.1 MGP_AJ_G0000983.1 mouse_genomes_project 2 12110671 12113055 - TEC TEC MGP_AJ_T0058454.1 MGP_AJ_G0026663.1 mouse_genomes_project 2 152063694 152095604 + MGP_AJ_P0058454 Mapre1 protein_coding protein_coding MGP_AJ_T0058455.1 MGP_AJ_G0026663.1 mouse_genomes_project 2 152064022 152080372 + Mapre1 protein_coding processed_transcript MGP_AJ_T0058456.1 MGP_AJ_G0026663.1 mouse_genomes_project 2 152067807 152078349 + Mapre1 protein_coding processed_transcript MGP_AJ_T0055188.1 MGP_AJ_G0025784.1 mouse_genomes_project 2 67165029 67175255 + MGP_AJ_P0055188 Ssb protein_coding protein_coding MGP_AJ_T0055189.1 MGP_AJ_G0025784.1 mouse_genomes_project 2 67165029 67175315 + MGP_AJ_P0055189 Ssb protein_coding protein_coding MGP_AJ_T0055190.1 MGP_AJ_G0025784.1 mouse_genomes_project 2 67165090 67174979 + MGP_AJ_P0055190 Ssb protein_coding nonsense_mediated_decay MGP_AJ_T0055191.1 MGP_AJ_G0025784.1 mouse_genomes_project 2 67165153 67171017 + MGP_AJ_P0055191 Ssb protein_coding protein_coding MGP_AJ_T0055192.1 MGP_AJ_G0025784.1 mouse_genomes_project 2 67166756 67172616 + Ssb protein_coding processed_transcript MGP_AJ_T0055193.1 MGP_AJ_G0025784.1 mouse_genomes_project 2 67172244 67174979 + MGP_AJ_P0055193 Ssb protein_coding protein_coding MGP_AJ_T0004190.1 MGP_AJ_G0003695.1 mouse_genomes_project 2 178933423 178935013 + Gm17180 antisense antisense MGP_AJ_T0057729.1 MGP_AJ_G0026478.1 mouse_genomes_project 2 128709092 128724058 + MGP_AJ_P0057729 Itpa protein_coding protein_coding MGP_AJ_T0057730.1 MGP_AJ_G0026478.1 mouse_genomes_project 2 128709287 128718129 + Itpa protein_coding retained_intron MGP_AJ_T0057731.1 MGP_AJ_G0026478.1 mouse_genomes_project 2 128709290 128717836 + Itpa protein_coding processed_transcript MGP_AJ_T0057732.1 MGP_AJ_G0026478.1 mouse_genomes_project 2 128709308 128714274 + Itpa protein_coding retained_intron MGP_AJ_T0057733.1 MGP_AJ_G0026478.1 mouse_genomes_project 2 128709347 128723146 + Itpa protein_coding processed_transcript MGP_AJ_T0057816.1 MGP_AJ_G0026493.1 mouse_genomes_project 2 129309433 129330755 + Pank2 protein_coding processed_transcript MGP_AJ_T0057817.1 MGP_AJ_G0026493.1 mouse_genomes_project 2 129309438 129346350 + MGP_AJ_P0057817 Pank2 protein_coding protein_coding MGP_AJ_T0057818.1 MGP_AJ_G0026493.1 mouse_genomes_project 2 129309463 129343650 + MGP_AJ_P0057818 Pank2 protein_coding nonsense_mediated_decay MGP_AJ_T0057819.1 MGP_AJ_G0026493.1 mouse_genomes_project 2 129309506 129346348 + MGP_AJ_P0057819 Pank2 protein_coding nonsense_mediated_decay MGP_AJ_T0057820.1 MGP_AJ_G0026493.1 mouse_genomes_project 2 129309734 129343493 + MGP_AJ_P0057820 Pank2 protein_coding protein_coding MGP_AJ_T0057821.1 MGP_AJ_G0026493.1 mouse_genomes_project 2 129309777 129343853 + Pank2 protein_coding processed_transcript MGP_AJ_T0057822.1 MGP_AJ_G0026493.1 mouse_genomes_project 2 129321394 129340623 + MGP_AJ_P0057822 Pank2 protein_coding nonsense_mediated_decay MGP_AJ_T0057823.1 MGP_AJ_G0026493.1 mouse_genomes_project 2 129321502 129343470 + MGP_AJ_P0057823 Pank2 protein_coding nonsense_mediated_decay MGP_AJ_T0013796.1 MGP_AJ_G0011891.1 mouse_genomes_project 2 142439368 142442381 - processed_pseudogene processed_pseudogene MGP_AJ_T0054914.1 MGP_AJ_G0025734.1 mouse_genomes_project 2 57163061 57278618 - MGP_AJ_P0054914 Baz2b protein_coding unknown_likely_coding MGP_AJ_T0054915.1 MGP_AJ_G0025734.1 mouse_genomes_project 2 57163065 57398557 - MGP_AJ_P0054915 Baz2b protein_coding protein_coding MGP_AJ_T0054916.1 MGP_AJ_G0025734.1 mouse_genomes_project 2 57163147 57275286 - MGP_AJ_P0054916 Baz2b protein_coding protein_coding MGP_AJ_T0054917.1 MGP_AJ_G0025734.1 mouse_genomes_project 2 57166887 57176239 - MGP_AJ_P0054917 Baz2b protein_coding protein_coding MGP_AJ_T0054918.1 MGP_AJ_G0025734.1 mouse_genomes_project 2 57177882 57187665 - Baz2b protein_coding processed_transcript MGP_AJ_T0054919.1 MGP_AJ_G0025734.1 mouse_genomes_project 2 57180612 57184284 - Baz2b protein_coding processed_transcript MGP_AJ_T0054920.1 MGP_AJ_G0025734.1 mouse_genomes_project 2 57188454 57214684 - MGP_AJ_P0054920 Baz2b protein_coding protein_coding MGP_AJ_T0054921.1 MGP_AJ_G0025734.1 mouse_genomes_project 2 57219929 57226572 - Baz2b protein_coding processed_transcript MGP_AJ_T0054922.1 MGP_AJ_G0025734.1 mouse_genomes_project 2 57245357 57398600 - Baz2b protein_coding processed_transcript MGP_AJ_T0054923.1 MGP_AJ_G0025734.1 mouse_genomes_project 2 57250525 57361824 - Baz2b protein_coding processed_transcript MGP_AJ_T0054924.1 MGP_AJ_G0025734.1 mouse_genomes_project 2 57273647 57398452 - Baz2b protein_coding processed_transcript MGP_AJ_T0054925.1 MGP_AJ_G0025734.1 mouse_genomes_project 2 57348153 57484784 - Baz2b protein_coding processed_transcript MGP_AJ_T0054926.1 MGP_AJ_G0025734.1 mouse_genomes_project 2 57480997 57484746 - Baz2b protein_coding processed_transcript MGP_AJ_T0054927.1 MGP_AJ_G0025734.1 mouse_genomes_project 2 57481464 57484104 - Baz2b protein_coding processed_transcript MGP_AJ_T0054928.1 MGP_AJ_G0025734.1 mouse_genomes_project 2 57481465 57484693 - Baz2b protein_coding processed_transcript MGP_AJ_T0013616.1 MGP_AJ_G0011711.1 mouse_genomes_project 2 76483496 76483698 - processed_pseudogene processed_pseudogene MGP_AJ_T0001104.1 MGP_AJ_G0001032.1 mouse_genomes_project 2 168279216 168283481 - TEC TEC MGP_AJ_T0055364.1 MGP_AJ_G0025816.1 mouse_genomes_project 2 70809294 70834355 - MGP_AJ_P0055364 protein_coding unknown_likely_coding MGP_AJ_T0055365.1 MGP_AJ_G0025816.1 mouse_genomes_project 2 70817170 70865844 - MGP_AJ_P0055365 protein_coding protein_coding MGP_AJ_T0055366.1 MGP_AJ_G0025816.1 mouse_genomes_project 2 70824158 70832268 - MGP_AJ_P0055366 protein_coding protein_coding MGP_AJ_T0055367.1 MGP_AJ_G0025816.1 mouse_genomes_project 2 70824218 70915322 - protein_coding processed_transcript MGP_AJ_T0055368.1 MGP_AJ_G0025816.1 mouse_genomes_project 2 70827629 70915225 - protein_coding processed_transcript MGP_AJ_T0054587.1 MGP_AJ_G0025680.1 mouse_genomes_project 2 35811460 35869243 - MGP_AJ_P0054587 Psmb7 protein_coding protein_coding MGP_AJ_T0054588.1 MGP_AJ_G0025680.1 mouse_genomes_project 2 35836610 35869076 - Psmb7 protein_coding retained_intron MGP_AJ_T0053414.1 MGP_AJ_G0025470.1 mouse_genomes_project 2 23612438 23624657 - Agpat2 protein_coding processed_transcript MGP_AJ_T0053415.1 MGP_AJ_G0025470.1 mouse_genomes_project 2 23612438 23624778 - MGP_AJ_P0053415 Agpat2 protein_coding protein_coding MGP_AJ_T0053416.1 MGP_AJ_G0025470.1 mouse_genomes_project 2 23613874 23624863 - Agpat2 protein_coding processed_transcript MGP_AJ_T0053417.1 MGP_AJ_G0025470.1 mouse_genomes_project 2 23615492 23624162 - Agpat2 protein_coding processed_transcript MGP_AJ_T0053418.1 MGP_AJ_G0025470.1 mouse_genomes_project 2 23615815 23624372 - MGP_AJ_P0053418 Agpat2 protein_coding protein_coding MGP_AJ_T0057571.1 MGP_AJ_G0026435.1 mouse_genomes_project 2 126125374 126129352 + Bcl2l11 protein_coding processed_transcript MGP_AJ_T0057572.1 MGP_AJ_G0026435.1 mouse_genomes_project 2 126125374 126130832 + MGP_AJ_P0057572 Bcl2l11 protein_coding protein_coding MGP_AJ_T0057573.1 MGP_AJ_G0026435.1 mouse_genomes_project 2 126125374 126160409 + MGP_AJ_P0057573 Bcl2l11 protein_coding protein_coding MGP_AJ_T0057574.1 MGP_AJ_G0026435.1 mouse_genomes_project 2 126125375 126161995 + MGP_AJ_P0057574 Bcl2l11 protein_coding protein_coding MGP_AJ_T0057575.1 MGP_AJ_G0026435.1 mouse_genomes_project 2 126125376 126157888 + MGP_AJ_P0057575 Bcl2l11 protein_coding protein_coding MGP_AJ_T0057576.1 MGP_AJ_G0026435.1 mouse_genomes_project 2 126125386 126160676 + MGP_AJ_P0057576 Bcl2l11 protein_coding protein_coding MGP_AJ_T0057577.1 MGP_AJ_G0026435.1 mouse_genomes_project 2 126126911 126129482 + Bcl2l11 protein_coding processed_transcript MGP_AJ_T0057578.1 MGP_AJ_G0026435.1 mouse_genomes_project 2 126127467 126128074 + Bcl2l11 protein_coding processed_transcript MGP_AJ_T0013768.1 MGP_AJ_G0011863.1 mouse_genomes_project 2 130727006 130727611 - processed_pseudogene processed_pseudogene MGP_AJ_T0099755.1 MGP_AJ_G0037721.1 mouse_genomes_project 2 29740808 29740913 - Gm23369 snRNA snRNA MGP_AJ_T0053642.1 MGP_AJ_G0025516.1 mouse_genomes_project 2 26414397 26593306 + MGP_AJ_P0053642 Med27 protein_coding protein_coding MGP_AJ_T0053643.1 MGP_AJ_G0025516.1 mouse_genomes_project 2 26414411 26547341 + MGP_AJ_P0053643 Med27 protein_coding protein_coding MGP_AJ_T0053644.1 MGP_AJ_G0025516.1 mouse_genomes_project 2 26445974 26577978 + MGP_AJ_P0053644 Med27 protein_coding protein_coding MGP_AJ_T0053645.1 MGP_AJ_G0025516.1 mouse_genomes_project 2 26445974 26568845 + MGP_AJ_P0053645 Med27 protein_coding protein_coding MGP_AJ_T0053646.1 MGP_AJ_G0025516.1 mouse_genomes_project 2 26446648 26568742 + MGP_AJ_P0053646 Med27 protein_coding protein_coding MGP_AJ_T0053647.1 MGP_AJ_G0025516.1 mouse_genomes_project 2 26446667 26593068 + MGP_AJ_P0053647 Med27 protein_coding protein_coding MGP_AJ_T0053648.1 MGP_AJ_G0025516.1 mouse_genomes_project 2 26446739 26546549 + MGP_AJ_P0053648 Med27 protein_coding protein_coding MGP_AJ_T0053649.1 MGP_AJ_G0025516.1 mouse_genomes_project 2 26459535 26591364 + Med27 protein_coding processed_transcript MGP_AJ_T0053650.1 MGP_AJ_G0025516.1 mouse_genomes_project 2 26565037 26569067 + Med27 protein_coding retained_intron MGP_AJ_T0053651.1 MGP_AJ_G0025516.1 mouse_genomes_project 2 26573390 26593194 + Med27 protein_coding processed_transcript MGP_AJ_T0013473.1 MGP_AJ_G0011568.1 mouse_genomes_project 2 23736667 23737361 - processed_pseudogene processed_pseudogene MGP_AJ_T0059206.1 MGP_AJ_G0026838.1 mouse_genomes_project 2 163308550 163311560 + MGP_AJ_P0059206 Ube2c protein_coding protein_coding MGP_AJ_T0059207.1 MGP_AJ_G0026838.1 mouse_genomes_project 2 163308555 163317407 + MGP_AJ_P0059207 Ube2c protein_coding protein_coding MGP_AJ_T0058410.1 MGP_AJ_G0026654.1 mouse_genomes_project 2 151463227 151507421 + Tm9sf4 protein_coding processed_transcript MGP_AJ_T0058411.1 MGP_AJ_G0026654.1 mouse_genomes_project 2 151463227 151513732 + MGP_AJ_P0058411 Tm9sf4 protein_coding protein_coding MGP_AJ_T0058412.1 MGP_AJ_G0026654.1 mouse_genomes_project 2 151463465 151490810 + Tm9sf4 protein_coding processed_transcript MGP_AJ_T0058413.1 MGP_AJ_G0026654.1 mouse_genomes_project 2 151463472 151496269 + Tm9sf4 protein_coding retained_intron MGP_AJ_T0058414.1 MGP_AJ_G0026654.1 mouse_genomes_project 2 151493129 151494918 + Tm9sf4 protein_coding retained_intron MGP_AJ_T0058415.1 MGP_AJ_G0026654.1 mouse_genomes_project 2 151493656 151503482 + Tm9sf4 protein_coding processed_transcript MGP_AJ_T0058416.1 MGP_AJ_G0026654.1 mouse_genomes_project 2 151497077 151506461 + Tm9sf4 protein_coding processed_transcript MGP_AJ_T0058417.1 MGP_AJ_G0026654.1 mouse_genomes_project 2 151498264 151501646 + Tm9sf4 protein_coding processed_transcript MGP_AJ_T0058418.1 MGP_AJ_G0026654.1 mouse_genomes_project 2 151502978 151513732 + Tm9sf4 protein_coding retained_intron MGP_AJ_T0058419.1 MGP_AJ_G0026654.1 mouse_genomes_project 2 151504713 151513732 + Tm9sf4 protein_coding retained_intron MGP_AJ_T0010364.1 MGP_AJ_G0008486.1 mouse_genomes_project 2 7537178 7537259 + Mir466h miRNA miRNA MGP_AJ_T0059556.1 MGP_AJ_G0026909.1 mouse_genomes_project 2 171050764 171064699 - MGP_AJ_P0059556 Aurka protein_coding unknown_likely_coding MGP_AJ_T0059557.1 MGP_AJ_G0026909.1 mouse_genomes_project 2 171051134 171057065 - Aurka protein_coding retained_intron MGP_AJ_T0059558.1 MGP_AJ_G0026909.1 mouse_genomes_project 2 171060535 171064487 - Aurka protein_coding retained_intron MGP_AJ_T0017892.1 MGP_AJ_G0015460.1 mouse_genomes_project 2 156636266 156637018 + Gm20412 processed_transcript processed_transcript MGP_AJ_T0057149.1 MGP_AJ_G0026341.1 mouse_genomes_project 2 118902861 118918896 - MGP_AJ_P0057149 Tgm7 protein_coding protein_coding MGP_AJ_T0052496.1 MGP_AJ_G0025310.1 mouse_genomes_project 2 6869095 6891581 - MGP_AJ_P0052496 Gata3 protein_coding protein_coding MGP_AJ_T0052497.1 MGP_AJ_G0025310.1 mouse_genomes_project 2 6875465 6886562 - Gata3 protein_coding processed_transcript MGP_AJ_T0052498.1 MGP_AJ_G0025310.1 mouse_genomes_project 2 6887376 6888289 - Gata3 protein_coding processed_transcript MGP_AJ_T0052499.1 MGP_AJ_G0025310.1 mouse_genomes_project 2 6887591 6903015 - MGP_AJ_P0052499 Gata3 protein_coding protein_coding MGP_AJ_T0052500.1 MGP_AJ_G0025310.1 mouse_genomes_project 2 6890761 6900765 - Gata3 protein_coding processed_transcript MGP_AJ_T0052501.1 MGP_AJ_G0025310.1 mouse_genomes_project 2 6890816 6902983 - Gata3 protein_coding processed_transcript MGP_AJ_T0007401.1 MGP_AJ_G0006066.1 mouse_genomes_project 2 165706006 165709039 - lincRNA lincRNA MGP_AJ_T0007402.1 MGP_AJ_G0006066.1 mouse_genomes_project 2 165706897 165708383 - lincRNA lincRNA MGP_AJ_T0098435.1 MGP_AJ_G0036419.1 mouse_genomes_project 2 11686154 11686776 - pseudogene pseudogene MGP_AJ_T0013421.1 MGP_AJ_G0011516.1 mouse_genomes_project 2 7924210 7925021 + processed_pseudogene processed_pseudogene MGP_AJ_T0098659.1 MGP_AJ_G0036643.1 mouse_genomes_project 2 119746866 119746980 - Gm23983 rRNA rRNA MGP_AJ_T0003939.1 MGP_AJ_G0003513.1 mouse_genomes_project 2 26417418 26464651 - Gm13402 antisense antisense MGP_AJ_T0011524.1 MGP_AJ_G0009646.1 mouse_genomes_project 2 165666996 165667185 + Gm27494 misc_RNA misc_RNA MGP_AJ_T0053538.1 MGP_AJ_G0025494.1 mouse_genomes_project 2 24934316 25088036 + MGP_AJ_P0053538 Col5a1 protein_coding protein_coding MGP_AJ_T0053539.1 MGP_AJ_G0025494.1 mouse_genomes_project 2 25065986 25085561 + MGP_AJ_P0053539 Col5a1 protein_coding protein_coding MGP_AJ_T0059144.1 MGP_AJ_G0026814.1 mouse_genomes_project 2 162877823 162880261 - MGP_AJ_P0059144 Slpi protein_coding protein_coding MGP_AJ_T0059145.1 MGP_AJ_G0026814.1 mouse_genomes_project 2 162877915 162879821 - MGP_AJ_P0059145 Slpi protein_coding protein_coding MGP_AJ_T0059146.1 MGP_AJ_G0026814.1 mouse_genomes_project 2 162879348 162916395 - MGP_AJ_P0059146 Slpi protein_coding protein_coding MGP_AJ_T0101034.1 MGP_AJ_G0039000.1 mouse_genomes_project 2 46732840 46732961 - Gm25215 snoRNA snoRNA MGP_AJ_T0101088.1 MGP_AJ_G0039054.1 mouse_genomes_project 2 156874844 156874976 - Gm23925 snoRNA snoRNA MGP_AJ_T0056663.1 MGP_AJ_G0026212.1 mouse_genomes_project 2 108800610 108835685 - MGP_AJ_P0056663 4930430A15Rik protein_coding protein_coding MGP_AJ_T0056664.1 MGP_AJ_G0026212.1 mouse_genomes_project 2 108823598 108860020 - MGP_AJ_P0056664 4930430A15Rik protein_coding protein_coding MGP_AJ_T0055702.1 MGP_AJ_G0025887.1 mouse_genomes_project 2 82220927 82224136 + MGP_AJ_P0055702 Timm10 protein_coding protein_coding MGP_AJ_T0055703.1 MGP_AJ_G0025887.1 mouse_genomes_project 2 82221314 82224036 + MGP_AJ_P0055703 Timm10 protein_coding protein_coding MGP_AJ_T0101055.1 MGP_AJ_G0039021.1 mouse_genomes_project 2 102240148 102240280 + Gm22439 snoRNA snoRNA MGP_AJ_T0007429.1 MGP_AJ_G0006089.1 mouse_genomes_project 2 169927399 169932382 + 1700007M16Rik lincRNA lincRNA MGP_AJ_T0058964.1 MGP_AJ_G0026764.1 mouse_genomes_project 2 157141988 157156078 + Actr5 protein_coding retained_intron MGP_AJ_T0058965.1 MGP_AJ_G0026764.1 mouse_genomes_project 2 157141988 157146260 + Actr5 protein_coding retained_intron MGP_AJ_T0058966.1 MGP_AJ_G0026764.1 mouse_genomes_project 2 157141988 157156078 + MGP_AJ_P0058966 Actr5 protein_coding nonsense_mediated_decay MGP_AJ_T0058967.1 MGP_AJ_G0026764.1 mouse_genomes_project 2 157141988 157156091 + MGP_AJ_P0058967 Actr5 protein_coding protein_coding MGP_AJ_T0058968.1 MGP_AJ_G0026764.1 mouse_genomes_project 2 157148731 157153577 + Actr5 protein_coding processed_transcript MGP_AJ_T0013627.1 MGP_AJ_G0011722.1 mouse_genomes_project 2 79980150 79980741 - processed_pseudogene processed_pseudogene MGP_AJ_T0058567.1 MGP_AJ_G0026696.1 mouse_genomes_project 2 153684110 153697972 + Dynlrb1 protein_coding processed_transcript MGP_AJ_T0058568.1 MGP_AJ_G0026696.1 mouse_genomes_project 2 153684112 153697977 + MGP_AJ_P0058568 Dynlrb1 protein_coding protein_coding MGP_AJ_T0058569.1 MGP_AJ_G0026696.1 mouse_genomes_project 2 153684185 153697835 + MGP_AJ_P0058569 Dynlrb1 protein_coding protein_coding MGP_AJ_T0058570.1 MGP_AJ_G0026696.1 mouse_genomes_project 2 153684388 153697780 + Dynlrb1 protein_coding processed_transcript MGP_AJ_T0059133.1 MGP_AJ_G0026807.1 mouse_genomes_project 2 162735566 162742770 - MGP_AJ_P0059133 Wfdc15b protein_coding protein_coding MGP_AJ_T0059134.1 MGP_AJ_G0026807.1 mouse_genomes_project 2 162735566 162742741 - MGP_AJ_P0059134 Wfdc15b protein_coding protein_coding MGP_AJ_T0059135.1 MGP_AJ_G0026807.1 mouse_genomes_project 2 162735567 162736696 - MGP_AJ_P0059135 Wfdc15b protein_coding protein_coding MGP_AJ_T0056834.1 MGP_AJ_G0026281.1 mouse_genomes_project 2 116482691 116503540 - MGP_AJ_P0056834 Plcb2 protein_coding protein_coding MGP_AJ_T0056835.1 MGP_AJ_G0026281.1 mouse_genomes_project 2 116483170 116503461 - MGP_AJ_P0056835 Plcb2 protein_coding protein_coding MGP_AJ_T0056836.1 MGP_AJ_G0026281.1 mouse_genomes_project 2 116483354 116486545 - Plcb2 protein_coding retained_intron MGP_AJ_T0056837.1 MGP_AJ_G0026281.1 mouse_genomes_project 2 116483873 116484916 - Plcb2 protein_coding retained_intron MGP_AJ_T0056838.1 MGP_AJ_G0026281.1 mouse_genomes_project 2 116485991 116489284 - Plcb2 protein_coding retained_intron MGP_AJ_T0056839.1 MGP_AJ_G0026281.1 mouse_genomes_project 2 116489412 116503493 - Plcb2 protein_coding retained_intron MGP_AJ_T0001094.1 MGP_AJ_G0001023.1 mouse_genomes_project 2 113846579 113847515 - TEC TEC MGP_AJ_T0055783.1 MGP_AJ_G0025932.1 mouse_genomes_project 2 83632986 83633949 - MGP_AJ_P0055783 Olfr1048 protein_coding protein_coding MGP_AJ_T0055789.1 MGP_AJ_G0025938.1 mouse_genomes_project 2 83755580 83756522 - MGP_AJ_P0055789 Olfr1056 protein_coding protein_coding MGP_AJ_T0098953.1 MGP_AJ_G0036931.1 mouse_genomes_project 2 159113994 159115843 + Gm14222 sense_intronic sense_intronic MGP_AJ_T0056800.1 MGP_AJ_G0026272.1 mouse_genomes_project 2 115876513 115891740 + MGP_AJ_P0056800 Thbs1 protein_coding protein_coding MGP_AJ_T0056801.1 MGP_AJ_G0026272.1 mouse_genomes_project 2 115887549 115888374 + Thbs1 protein_coding processed_transcript MGP_AJ_T0054129.1 MGP_AJ_G0025581.1 mouse_genomes_project 2 29521379 29526146 - MGP_AJ_P0054129 1110008P14Rik protein_coding protein_coding MGP_AJ_T0054130.1 MGP_AJ_G0025581.1 mouse_genomes_project 2 29523384 29526222 - MGP_AJ_P0054130 1110008P14Rik protein_coding protein_coding MGP_AJ_T0099772.1 MGP_AJ_G0037738.1 mouse_genomes_project 2 82089113 82089214 + Gm27942 snRNA snRNA MGP_AJ_T0054515.1 MGP_AJ_G0025660.1 mouse_genomes_project 2 34189762 34190689 + MGP_AJ_P0054515 Olfr357 protein_coding protein_coding MGP_AJ_T0058132.1 MGP_AJ_G0026562.1 mouse_genomes_project 2 144301073 144304155 + MGP_AJ_P0058132 Insm1 protein_coding protein_coding MGP_AJ_T0054663.1 MGP_AJ_G0025693.1 mouse_genomes_project 2 41841256 42136387 - MGP_AJ_P0054663 Gtdc1 protein_coding protein_coding MGP_AJ_T0054664.1 MGP_AJ_G0025693.1 mouse_genomes_project 2 41841259 42031923 - MGP_AJ_P0054664 Gtdc1 protein_coding protein_coding MGP_AJ_T0054665.1 MGP_AJ_G0025693.1 mouse_genomes_project 2 41841977 41848193 - Gtdc1 protein_coding processed_transcript MGP_AJ_T0054666.1 MGP_AJ_G0025693.1 mouse_genomes_project 2 41847215 41848560 - Gtdc1 protein_coding processed_transcript MGP_AJ_T0054667.1 MGP_AJ_G0025693.1 mouse_genomes_project 2 41852325 42204587 - MGP_AJ_P0054667 Gtdc1 protein_coding protein_coding MGP_AJ_T0054668.1 MGP_AJ_G0025693.1 mouse_genomes_project 2 41907565 42204690 - Gtdc1 protein_coding processed_transcript MGP_AJ_T0054669.1 MGP_AJ_G0025693.1 mouse_genomes_project 2 41909700 42205083 - MGP_AJ_P0054669 Gtdc1 protein_coding protein_coding MGP_AJ_T0054670.1 MGP_AJ_G0025693.1 mouse_genomes_project 2 42027380 42101134 - Gtdc1 protein_coding processed_transcript MGP_AJ_T0054671.1 MGP_AJ_G0025693.1 mouse_genomes_project 2 42060980 42204662 - MGP_AJ_P0054671 Gtdc1 protein_coding protein_coding MGP_AJ_T0054672.1 MGP_AJ_G0025693.1 mouse_genomes_project 2 42064268 42204660 - Gtdc1 protein_coding processed_transcript MGP_AJ_T0054673.1 MGP_AJ_G0025693.1 mouse_genomes_project 2 42066856 42204575 - Gtdc1 protein_coding processed_transcript MGP_AJ_T0013621.1 MGP_AJ_G0011716.1 mouse_genomes_project 2 78065674 78066282 + processed_pseudogene processed_pseudogene MGP_AJ_T0010439.1 MGP_AJ_G0008561.1 mouse_genomes_project 2 101470445 101470541 + Gm22757 miRNA miRNA MGP_AJ_T0013763.1 MGP_AJ_G0011858.1 mouse_genomes_project 2 129502545 129503058 - processed_pseudogene processed_pseudogene MGP_AJ_T0054472.1 MGP_AJ_G0025636.1 mouse_genomes_project 2 33247611 33277764 + MGP_AJ_P0054472 Morn5 protein_coding protein_coding MGP_AJ_T0017844.1 MGP_AJ_G0015438.1 mouse_genomes_project 2 118655961 118672339 + AV039307 processed_transcript processed_transcript MGP_AJ_T0017845.1 MGP_AJ_G0015438.1 mouse_genomes_project 2 118655973 118672473 + AV039307 processed_transcript processed_transcript MGP_AJ_T0017846.1 MGP_AJ_G0015438.1 mouse_genomes_project 2 118672016 118672340 + AV039307 processed_transcript processed_transcript MGP_AJ_T0007214.1 MGP_AJ_G0005911.1 mouse_genomes_project 2 52782288 52786635 - Gm26794 lincRNA lincRNA MGP_AJ_T0055069.1 MGP_AJ_G0025757.1 mouse_genomes_project 2 63127930 63312874 + MGP_AJ_P0055069 Csrnp3 protein_coding protein_coding MGP_AJ_T0055070.1 MGP_AJ_G0025757.1 mouse_genomes_project 2 63128005 63306934 + MGP_AJ_P0055070 Csrnp3 protein_coding protein_coding MGP_AJ_T0055071.1 MGP_AJ_G0025757.1 mouse_genomes_project 2 63128008 63160991 + Csrnp3 protein_coding retained_intron MGP_AJ_T0055072.1 MGP_AJ_G0025757.1 mouse_genomes_project 2 63128018 63304607 + MGP_AJ_P0055072 Csrnp3 protein_coding nonsense_mediated_decay MGP_AJ_T0055073.1 MGP_AJ_G0025757.1 mouse_genomes_project 2 63142665 63231166 + Csrnp3 protein_coding retained_intron MGP_AJ_T0055074.1 MGP_AJ_G0025757.1 mouse_genomes_project 2 63212144 63305274 + MGP_AJ_P0055074 Csrnp3 protein_coding protein_coding MGP_AJ_T0055075.1 MGP_AJ_G0025757.1 mouse_genomes_project 2 63213872 63304812 + MGP_AJ_P0055075 Csrnp3 protein_coding protein_coding MGP_AJ_T0055076.1 MGP_AJ_G0025757.1 mouse_genomes_project 2 63230675 63304381 + MGP_AJ_P0055076 Csrnp3 protein_coding protein_coding MGP_AJ_T0013676.1 MGP_AJ_G0011771.1 mouse_genomes_project 2 94670382 94671783 + processed_pseudogene processed_pseudogene MGP_AJ_T0003981.1 MGP_AJ_G0003547.1 mouse_genomes_project 2 57833468 57836635 + Gm13583 antisense antisense MGP_AJ_T0003982.1 MGP_AJ_G0003547.1 mouse_genomes_project 2 57833470 57833593 + Gm13583 antisense antisense MGP_AJ_T0003983.1 MGP_AJ_G0003547.1 mouse_genomes_project 2 57835066 57835986 + Gm13583 antisense antisense MGP_AJ_T0101988.1 MGP_AJ_G0039812.1 mouse_genomes_project 2 85815025 85815867 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_AJ_T0001044.1 MGP_AJ_G0000975.1 mouse_genomes_project 2 11227894 11231369 + TEC TEC MGP_AJ_T0053107.1 MGP_AJ_G0025416.1 mouse_genomes_project 2 22314719 22326284 + MGP_AJ_P0053107 Man1b1 protein_coding protein_coding MGP_AJ_T0053108.1 MGP_AJ_G0025416.1 mouse_genomes_project 2 22315110 22335122 + MGP_AJ_P0053108 Man1b1 protein_coding protein_coding MGP_AJ_T0053109.1 MGP_AJ_G0025416.1 mouse_genomes_project 2 22315143 22327552 + Man1b1 protein_coding processed_transcript MGP_AJ_T0053110.1 MGP_AJ_G0025416.1 mouse_genomes_project 2 22315154 22320550 + Man1b1 protein_coding processed_transcript MGP_AJ_T0053111.1 MGP_AJ_G0025416.1 mouse_genomes_project 2 22320493 22328266 + Man1b1 protein_coding processed_transcript MGP_AJ_T0053112.1 MGP_AJ_G0025416.1 mouse_genomes_project 2 22328000 22328704 + Man1b1 protein_coding processed_transcript MGP_AJ_T0013854.1 MGP_AJ_G0011949.1 mouse_genomes_project 2 158385163 158386029 - processed_pseudogene processed_pseudogene MGP_AJ_T0010441.1 MGP_AJ_G0008563.1 mouse_genomes_project 2 102086445 102086525 - Mir1902 miRNA miRNA MGP_AJ_T0055949.1 MGP_AJ_G0026071.1 mouse_genomes_project 2 87436401 87442210 - MGP_AJ_P0055949 Olfr1256 protein_coding protein_coding MGP_AJ_T0055950.1 MGP_AJ_G0026071.1 mouse_genomes_project 2 87436401 87437322 - MGP_AJ_P0055950 Olfr1256 protein_coding protein_coding MGP_AJ_T0010486.1 MGP_AJ_G0008608.1 mouse_genomes_project 2 173001976 173002055 - Mir296 miRNA miRNA MGP_AJ_T0011500.1 MGP_AJ_G0009622.1 mouse_genomes_project 2 47243192 47243302 - Gm25223 misc_RNA misc_RNA MGP_AJ_T0055630.1 MGP_AJ_G0025871.1 mouse_genomes_project 2 81346518 81371146 - MGP_AJ_P0055630 Zswim2 protein_coding protein_coding MGP_AJ_T0055631.1 MGP_AJ_G0025871.1 mouse_genomes_project 2 81348208 81371148 - MGP_AJ_P0055631 Zswim2 protein_coding protein_coding MGP_AJ_T0055632.1 MGP_AJ_G0025871.1 mouse_genomes_project 2 81357458 81357908 - Zswim2 protein_coding processed_transcript MGP_AJ_T0052605.1 MGP_AJ_G0025327.1 mouse_genomes_project 2 9178583 9379926 - MGP_AJ_P0052605 Itga8 protein_coding protein_coding MGP_AJ_T0052606.1 MGP_AJ_G0025327.1 mouse_genomes_project 2 9179430 9379896 - MGP_AJ_P0052606 Itga8 protein_coding nonsense_mediated_decay MGP_AJ_T0052607.1 MGP_AJ_G0025327.1 mouse_genomes_project 2 9181021 9205013 - MGP_AJ_P0052607 Itga8 protein_coding protein_coding MGP_AJ_T0052608.1 MGP_AJ_G0025327.1 mouse_genomes_project 2 9255438 9266229 - Itga8 protein_coding retained_intron MGP_AJ_T0052609.1 MGP_AJ_G0025327.1 mouse_genomes_project 2 9292565 9316513 - Itga8 protein_coding processed_transcript MGP_AJ_T0052610.1 MGP_AJ_G0025327.1 mouse_genomes_project 2 9323683 9379926 - Itga8 protein_coding retained_intron MGP_AJ_T0052611.1 MGP_AJ_G0025327.1 mouse_genomes_project 2 9364967 9379592 - Itga8 protein_coding processed_transcript MGP_AJ_T0058177.1 MGP_AJ_G0026577.1 mouse_genomes_project 2 146884068 146887038 - MGP_AJ_P0058177 Cst11 protein_coding protein_coding MGP_AJ_T0056816.1 MGP_AJ_G0026277.1 mouse_genomes_project 2 116300248 116322104 - MGP_AJ_P0056816 Bmf protein_coding protein_coding MGP_AJ_T0056817.1 MGP_AJ_G0026277.1 mouse_genomes_project 2 116301723 116319975 - MGP_AJ_P0056817 Bmf protein_coding protein_coding MGP_AJ_T0056818.1 MGP_AJ_G0026277.1 mouse_genomes_project 2 116303461 116316989 - Bmf protein_coding processed_transcript MGP_AJ_T0056819.1 MGP_AJ_G0026277.1 mouse_genomes_project 2 116303542 116317720 - Bmf protein_coding processed_transcript MGP_AJ_T0056820.1 MGP_AJ_G0026277.1 mouse_genomes_project 2 116303908 116322079 - Bmf protein_coding processed_transcript MGP_AJ_T0056821.1 MGP_AJ_G0026277.1 mouse_genomes_project 2 116317587 116319431 - Bmf protein_coding processed_transcript MGP_AJ_T0056822.1 MGP_AJ_G0026277.1 mouse_genomes_project 2 116317639 116320015 - Bmf protein_coding processed_transcript MGP_AJ_T0056823.1 MGP_AJ_G0026277.1 mouse_genomes_project 2 116319312 116322092 - Bmf protein_coding processed_transcript MGP_AJ_T0010393.1 MGP_AJ_G0008515.1 mouse_genomes_project 2 27816365 27816449 + Mir3089 miRNA miRNA MGP_AJ_T0010485.1 MGP_AJ_G0008607.1 mouse_genomes_project 2 172982160 172982228 + Gm27591 miRNA miRNA MGP_AJ_T0007328.1 MGP_AJ_G0006004.1 mouse_genomes_project 2 124477455 124511642 - Gm26697 lincRNA lincRNA MGP_AJ_T0058486.1 MGP_AJ_G0026675.1 mouse_genomes_project 2 152515469 152552244 + MGP_AJ_P0058486 Bpifb1 protein_coding protein_coding MGP_AJ_T0058487.1 MGP_AJ_G0026675.1 mouse_genomes_project 2 152515474 152552217 + Bpifb1 protein_coding retained_intron MGP_AJ_T0058488.1 MGP_AJ_G0026675.1 mouse_genomes_project 2 152525614 152552218 + MGP_AJ_P0058488 Bpifb1 protein_coding protein_coding MGP_AJ_T0013880.1 MGP_AJ_G0011975.1 mouse_genomes_project 2 172778616 172779271 - processed_pseudogene processed_pseudogene MGP_AJ_T0010449.1 MGP_AJ_G0008571.1 mouse_genomes_project 2 119268763 119268864 - Gm22953 miRNA miRNA MGP_AJ_T0057715.1 MGP_AJ_G0026472.1 mouse_genomes_project 2 128615584 128616466 + MGP_AJ_P0057715 Oxt protein_coding protein_coding MGP_AJ_T0017741.1 MGP_AJ_G0015377.1 mouse_genomes_project 2 23462895 23477577 + 0610009E02Rik processed_transcript processed_transcript MGP_AJ_T0017742.1 MGP_AJ_G0015377.1 mouse_genomes_project 2 23463123 23476193 + 0610009E02Rik processed_transcript processed_transcript MGP_AJ_T0017743.1 MGP_AJ_G0015377.1 mouse_genomes_project 2 23463141 23477589 + 0610009E02Rik processed_transcript processed_transcript MGP_AJ_T0057140.1 MGP_AJ_G0026339.1 mouse_genomes_project 2 118828425 118847619 - MGP_AJ_P0057140 Epb42 protein_coding protein_coding MGP_AJ_T0057141.1 MGP_AJ_G0026339.1 mouse_genomes_project 2 118828753 118837795 - Epb42 protein_coding processed_transcript MGP_AJ_T0057142.1 MGP_AJ_G0026339.1 mouse_genomes_project 2 118828753 118833335 - Epb42 protein_coding processed_transcript MGP_AJ_T0057143.1 MGP_AJ_G0026339.1 mouse_genomes_project 2 118829938 118832545 - Epb42 protein_coding retained_intron MGP_AJ_T0057144.1 MGP_AJ_G0026339.1 mouse_genomes_project 2 118834177 118847382 - MGP_AJ_P0057144 Epb42 protein_coding protein_coding MGP_AJ_T0057145.1 MGP_AJ_G0026339.1 mouse_genomes_project 2 118838241 118847228 - Epb42 protein_coding processed_transcript MGP_AJ_T0057146.1 MGP_AJ_G0026339.1 mouse_genomes_project 2 118843958 118847292 - Epb42 protein_coding processed_transcript MGP_AJ_T0010376.1 MGP_AJ_G0008498.1 mouse_genomes_project 2 19542673 19542741 + Mir3967 miRNA miRNA MGP_AJ_T0013870.1 MGP_AJ_G0011965.1 mouse_genomes_project 2 165694506 165695062 - processed_pseudogene processed_pseudogene MGP_AJ_T0101054.1 MGP_AJ_G0039020.1 mouse_genomes_project 2 101876542 101876669 - Gm22501 snoRNA snoRNA MGP_AJ_T0001083.1 MGP_AJ_G0001012.1 mouse_genomes_project 2 66164177 66167809 + TEC TEC MGP_AJ_T0013500.1 MGP_AJ_G0011595.1 mouse_genomes_project 2 34892782 34893578 + processed_pseudogene processed_pseudogene MGP_AJ_T0003965.1 MGP_AJ_G0003535.1 mouse_genomes_project 2 35568518 35569478 - Gm27197 antisense antisense MGP_AJ_T0058871.1 MGP_AJ_G0026745.1 mouse_genomes_project 2 155783702 155794261 + Rpn2 protein_coding processed_transcript MGP_AJ_T0058872.1 MGP_AJ_G0026745.1 mouse_genomes_project 2 155783744 155834417 + MGP_AJ_P0058872 Rpn2 protein_coding protein_coding MGP_AJ_T0058873.1 MGP_AJ_G0026745.1 mouse_genomes_project 2 155783831 155834417 + MGP_AJ_P0058873 Rpn2 protein_coding protein_coding MGP_AJ_T0058874.1 MGP_AJ_G0026745.1 mouse_genomes_project 2 155784111 155834154 + Rpn2 protein_coding processed_transcript MGP_AJ_T0058875.1 MGP_AJ_G0026745.1 mouse_genomes_project 2 155784254 155795411 + Rpn2 protein_coding processed_transcript MGP_AJ_T0058876.1 MGP_AJ_G0026745.1 mouse_genomes_project 2 155786628 155795292 + Rpn2 protein_coding processed_transcript MGP_AJ_T0058877.1 MGP_AJ_G0026745.1 mouse_genomes_project 2 155788282 155833833 + Rpn2 protein_coding processed_transcript MGP_AJ_T0058878.1 MGP_AJ_G0026745.1 mouse_genomes_project 2 155799541 155800053 + Rpn2 protein_coding processed_transcript MGP_AJ_T0058879.1 MGP_AJ_G0026745.1 mouse_genomes_project 2 155819267 155820925 + Rpn2 protein_coding processed_transcript MGP_AJ_T0058880.1 MGP_AJ_G0026745.1 mouse_genomes_project 2 155820893 155830569 + Rpn2 protein_coding retained_intron MGP_AJ_T0058881.1 MGP_AJ_G0026745.1 mouse_genomes_project 2 155827880 155830258 + Rpn2 protein_coding retained_intron MGP_AJ_T0052510.1 MGP_AJ_G0025314.1 mouse_genomes_project 2 7074628 7099240 - MGP_AJ_P0052510 Atp5c1 protein_coding protein_coding MGP_AJ_T0052511.1 MGP_AJ_G0025314.1 mouse_genomes_project 2 7074638 7099292 - MGP_AJ_P0052511 Atp5c1 protein_coding protein_coding MGP_AJ_T0052512.1 MGP_AJ_G0025314.1 mouse_genomes_project 2 7074642 7099257 - MGP_AJ_P0052512 Atp5c1 protein_coding protein_coding MGP_AJ_T0052513.1 MGP_AJ_G0025314.1 mouse_genomes_project 2 7082123 7098672 - MGP_AJ_P0052513 Atp5c1 protein_coding protein_coding MGP_AJ_T0052514.1 MGP_AJ_G0025314.1 mouse_genomes_project 2 7082267 7098989 - MGP_AJ_P0052514 Atp5c1 protein_coding protein_coding MGP_AJ_T0052515.1 MGP_AJ_G0025314.1 mouse_genomes_project 2 7082949 7098868 - MGP_AJ_P0052515 Atp5c1 protein_coding protein_coding MGP_AJ_T0010349.1 MGP_AJ_G0008471.1 mouse_genomes_project 2 7529605 7529732 + Gm22091 miRNA miRNA MGP_AJ_T0013779.1 MGP_AJ_G0011874.1 mouse_genomes_project 2 137501103 137501612 - processed_pseudogene processed_pseudogene MGP_AJ_T0058467.1 MGP_AJ_G0026668.1 mouse_genomes_project 2 152239143 152254028 + MGP_AJ_P0058467 Bpifb3 protein_coding protein_coding MGP_AJ_T0058468.1 MGP_AJ_G0026668.1 mouse_genomes_project 2 152239307 152254025 + MGP_AJ_P0058468 Bpifb3 protein_coding protein_coding MGP_AJ_T0059991.1 MGP_AJ_G0027002.1 mouse_genomes_project 2 180571492 180577471 + MGP_AJ_P0059991 Oprl1 protein_coding protein_coding MGP_AJ_T0059992.1 MGP_AJ_G0027002.1 mouse_genomes_project 2 180571518 180577461 + MGP_AJ_P0059992 Oprl1 protein_coding nonsense_mediated_decay MGP_AJ_T0059993.1 MGP_AJ_G0027002.1 mouse_genomes_project 2 180571522 180575073 + MGP_AJ_P0059993 Oprl1 protein_coding protein_coding MGP_AJ_T0059994.1 MGP_AJ_G0027002.1 mouse_genomes_project 2 180571543 180577460 + MGP_AJ_P0059994 Oprl1 protein_coding protein_coding MGP_AJ_T0059995.1 MGP_AJ_G0027002.1 mouse_genomes_project 2 180571559 180577458 + MGP_AJ_P0059995 Oprl1 protein_coding nonsense_mediated_decay MGP_AJ_T0059996.1 MGP_AJ_G0027002.1 mouse_genomes_project 2 180571570 180577460 + Oprl1 protein_coding processed_transcript MGP_AJ_T0059997.1 MGP_AJ_G0027002.1 mouse_genomes_project 2 180571577 180572855 + Oprl1 protein_coding processed_transcript MGP_AJ_T0059998.1 MGP_AJ_G0027002.1 mouse_genomes_project 2 180571824 180577458 + MGP_AJ_P0059998 Oprl1 protein_coding protein_coding MGP_AJ_T0059999.1 MGP_AJ_G0027002.1 mouse_genomes_project 2 180572069 180575834 + MGP_AJ_P0059999 Oprl1 protein_coding protein_coding MGP_AJ_T0060000.1 MGP_AJ_G0027002.1 mouse_genomes_project 2 180572178 180575855 + MGP_AJ_P0060000 Oprl1 protein_coding protein_coding MGP_AJ_T0060001.1 MGP_AJ_G0027002.1 mouse_genomes_project 2 180572179 180575855 + MGP_AJ_P0060001 Oprl1 protein_coding nonsense_mediated_decay MGP_AJ_T0058223.1 MGP_AJ_G0026598.1 mouse_genomes_project 2 148986526 149032381 + MGP_AJ_P0058223 Pygb protein_coding protein_coding MGP_AJ_T0058224.1 MGP_AJ_G0026598.1 mouse_genomes_project 2 148988814 149013808 + Pygb protein_coding processed_transcript MGP_AJ_T0058225.1 MGP_AJ_G0026598.1 mouse_genomes_project 2 149015128 149017567 + Pygb protein_coding retained_intron MGP_AJ_T0058226.1 MGP_AJ_G0026598.1 mouse_genomes_project 2 149024229 149029096 + Pygb protein_coding retained_intron MGP_AJ_T0058227.1 MGP_AJ_G0026598.1 mouse_genomes_project 2 149029010 149031257 + Pygb protein_coding retained_intron MGP_AJ_T0056021.1 MGP_AJ_G0026096.1 mouse_genomes_project 2 88501162 88511249 - MGP_AJ_P0056021 Ndufs3 protein_coding protein_coding MGP_AJ_T0056022.1 MGP_AJ_G0026096.1 mouse_genomes_project 2 88504810 88511064 - Ndufs3 protein_coding processed_transcript MGP_AJ_T0056023.1 MGP_AJ_G0026096.1 mouse_genomes_project 2 88510245 88511124 - Ndufs3 protein_coding processed_transcript MGP_AJ_T0010405.1 MGP_AJ_G0008527.1 mouse_genomes_project 2 34908754 34908838 - Mir5128 miRNA miRNA MGP_AJ_T0010418.1 MGP_AJ_G0008540.1 mouse_genomes_project 2 70313464 70313589 - Gm25960 miRNA miRNA MGP_AJ_T0054503.1 MGP_AJ_G0025649.1 mouse_genomes_project 2 33931153 33932092 + MGP_AJ_P0054503 Olfr347 protein_coding protein_coding MGP_AJ_T0057768.1 MGP_AJ_G0026483.1 mouse_genomes_project 2 129097973 129101419 - Adam33 protein_coding retained_intron MGP_AJ_T0057769.1 MGP_AJ_G0026483.1 mouse_genomes_project 2 129098199 129111213 - MGP_AJ_P0057769 Adam33 protein_coding protein_coding MGP_AJ_T0057770.1 MGP_AJ_G0026483.1 mouse_genomes_project 2 129098207 129110968 - Adam33 protein_coding retained_intron MGP_AJ_T0057771.1 MGP_AJ_G0026483.1 mouse_genomes_project 2 129098245 129103748 - MGP_AJ_P0057771 Adam33 protein_coding protein_coding MGP_AJ_T0057772.1 MGP_AJ_G0026483.1 mouse_genomes_project 2 129098257 129110944 - MGP_AJ_P0057772 Adam33 protein_coding nonsense_mediated_decay MGP_AJ_T0057773.1 MGP_AJ_G0026483.1 mouse_genomes_project 2 129098491 129111213 - MGP_AJ_P0057773 Adam33 protein_coding protein_coding MGP_AJ_T0057774.1 MGP_AJ_G0026483.1 mouse_genomes_project 2 129098492 129103862 - Adam33 protein_coding retained_intron MGP_AJ_T0057775.1 MGP_AJ_G0026483.1 mouse_genomes_project 2 129100424 129101909 - MGP_AJ_P0057775 Adam33 protein_coding nonsense_mediated_decay MGP_AJ_T0057776.1 MGP_AJ_G0026483.1 mouse_genomes_project 2 129100472 129101899 - Adam33 protein_coding processed_transcript MGP_AJ_T0057777.1 MGP_AJ_G0026483.1 mouse_genomes_project 2 129100603 129101442 - Adam33 protein_coding processed_transcript MGP_AJ_T0057778.1 MGP_AJ_G0026483.1 mouse_genomes_project 2 129100904 129101912 - Adam33 protein_coding retained_intron MGP_AJ_T0057779.1 MGP_AJ_G0026483.1 mouse_genomes_project 2 129104914 129110912 - MGP_AJ_P0057779 Adam33 protein_coding protein_coding MGP_AJ_T0057780.1 MGP_AJ_G0026483.1 mouse_genomes_project 2 129109433 129110942 - Adam33 protein_coding retained_intron MGP_AJ_T0101065.1 MGP_AJ_G0039031.1 mouse_genomes_project 2 128121849 128121978 + Gm24665 snoRNA snoRNA MGP_AJ_T0007286.1 MGP_AJ_G0005970.1 mouse_genomes_project 2 100968688 101002779 - A930006I01Rik lincRNA lincRNA MGP_AJ_T0056926.1 MGP_AJ_G0026305.1 mouse_genomes_project 2 117314354 117345551 - MGP_AJ_P0056926 Exd1 protein_coding protein_coding MGP_AJ_T0056927.1 MGP_AJ_G0026305.1 mouse_genomes_project 2 117314360 117339639 - MGP_AJ_P0056927 Exd1 protein_coding protein_coding MGP_AJ_T0056928.1 MGP_AJ_G0026305.1 mouse_genomes_project 2 117336970 117345118 - MGP_AJ_P0056928 Exd1 protein_coding protein_coding MGP_AJ_T0055736.1 MGP_AJ_G0025895.1 mouse_genomes_project 2 82432897 82437017 + Tnks1bp1 protein_coding processed_transcript MGP_AJ_T0055737.1 MGP_AJ_G0025895.1 mouse_genomes_project 2 82432930 82458474 + Tnks1bp1 protein_coding processed_transcript MGP_AJ_T0055738.1 MGP_AJ_G0025895.1 mouse_genomes_project 2 82432944 82448963 + MGP_AJ_P0055738 Tnks1bp1 protein_coding unknown_likely_coding MGP_AJ_T0055739.1 MGP_AJ_G0025895.1 mouse_genomes_project 2 82435344 82436935 + Tnks1bp1 protein_coding processed_transcript MGP_AJ_T0055740.1 MGP_AJ_G0025895.1 mouse_genomes_project 2 82435344 82458478 + MGP_AJ_P0055740 Tnks1bp1 protein_coding protein_coding MGP_AJ_T0055741.1 MGP_AJ_G0025895.1 mouse_genomes_project 2 82435492 82458468 + Tnks1bp1 protein_coding processed_transcript MGP_AJ_T0055742.1 MGP_AJ_G0025895.1 mouse_genomes_project 2 82435777 82443442 + Tnks1bp1 protein_coding processed_transcript MGP_AJ_T0055743.1 MGP_AJ_G0025895.1 mouse_genomes_project 2 82443043 82458478 + MGP_AJ_P0055743 Tnks1bp1 protein_coding protein_coding MGP_AJ_T0010454.1 MGP_AJ_G0008576.1 mouse_genomes_project 2 126932458 126932578 - Gm22859 miRNA miRNA MGP_AJ_T0053899.1 MGP_AJ_G0025551.1 mouse_genomes_project 2 27906518 27924218 + MGP_AJ_P0053899 Ntmt1 protein_coding protein_coding MGP_AJ_T0053900.1 MGP_AJ_G0025551.1 mouse_genomes_project 2 27906633 27924202 + MGP_AJ_P0053900 Ntmt1 protein_coding nonsense_mediated_decay MGP_AJ_T0053901.1 MGP_AJ_G0025551.1 mouse_genomes_project 2 27906634 27923570 + MGP_AJ_P0053901 Ntmt1 protein_coding protein_coding MGP_AJ_T0053902.1 MGP_AJ_G0025551.1 mouse_genomes_project 2 27906649 27915945 + Ntmt1 protein_coding processed_transcript MGP_AJ_T0053903.1 MGP_AJ_G0025551.1 mouse_genomes_project 2 27906686 27916409 + Ntmt1 protein_coding processed_transcript MGP_AJ_T0053904.1 MGP_AJ_G0025551.1 mouse_genomes_project 2 27906805 27923737 + MGP_AJ_P0053904 Ntmt1 protein_coding nonsense_mediated_decay MGP_AJ_T0053905.1 MGP_AJ_G0025551.1 mouse_genomes_project 2 27906882 27920545 + MGP_AJ_P0053905 Ntmt1 protein_coding protein_coding MGP_AJ_T0053906.1 MGP_AJ_G0025551.1 mouse_genomes_project 2 27917992 27920665 + MGP_AJ_P0053906 Ntmt1 protein_coding protein_coding MGP_AJ_T0053907.1 MGP_AJ_G0025551.1 mouse_genomes_project 2 27919698 27923744 + MGP_AJ_P0053907 Ntmt1 protein_coding protein_coding MGP_AJ_T0059853.1 MGP_AJ_G0026979.1 mouse_genomes_project 2 180043583 180052657 - MGP_AJ_P0059853 Ptk6 protein_coding protein_coding MGP_AJ_T0055759.1 MGP_AJ_G0025909.1 mouse_genomes_project 2 83162698 83163734 + MGP_AJ_P0055759 Olfr1014 protein_coding protein_coding MGP_AJ_T0013459.1 MGP_AJ_G0011554.1 mouse_genomes_project 2 19657083 19657418 - processed_pseudogene processed_pseudogene MGP_AJ_T0001056.1 MGP_AJ_G0000987.1 mouse_genomes_project 2 21170441 21172219 + TEC TEC MGP_AJ_T0013661.1 MGP_AJ_G0011756.1 mouse_genomes_project 2 89137392 89137697 - processed_pseudogene processed_pseudogene MGP_AJ_T0010385.1 MGP_AJ_G0008507.1 mouse_genomes_project 2 24433817 24433917 + Gm24049 miRNA miRNA MGP_AJ_T0101090.1 MGP_AJ_G0039056.1 mouse_genomes_project 2 156894508 156894641 + Gm25129 snoRNA snoRNA MGP_AJ_T0013469.1 MGP_AJ_G0011564.1 mouse_genomes_project 2 22530205 22530445 + processed_pseudogene processed_pseudogene MGP_AJ_T0001091.1 MGP_AJ_G0001020.1 mouse_genomes_project 2 76418081 76543531 + TEC TEC MGP_AJ_T0007248.1 MGP_AJ_G0005940.1 mouse_genomes_project 2 72825260 72833383 + Gm13658 lincRNA lincRNA MGP_AJ_T0013497.1 MGP_AJ_G0011592.1 mouse_genomes_project 2 34398917 34399940 + processed_pseudogene processed_pseudogene MGP_AJ_T0059595.1 MGP_AJ_G0026921.1 mouse_genomes_project 2 171862872 171869054 + MGP_AJ_P0059595 Pck1 protein_coding protein_coding MGP_AJ_T0059596.1 MGP_AJ_G0026921.1 mouse_genomes_project 2 171862897 171864634 + Pck1 protein_coding processed_transcript MGP_AJ_T0059597.1 MGP_AJ_G0026921.1 mouse_genomes_project 2 171862897 171864284 + Pck1 protein_coding retained_intron MGP_AJ_T0059598.1 MGP_AJ_G0026921.1 mouse_genomes_project 2 171862906 171869052 + Pck1 protein_coding retained_intron MGP_AJ_T0004148.1 MGP_AJ_G0003667.1 mouse_genomes_project 2 160914775 160917905 + Ptprtos antisense antisense MGP_AJ_T0003952.1 MGP_AJ_G0003525.1 mouse_genomes_project 2 30003308 30005291 + Gm13524 antisense antisense MGP_AJ_T0055812.1 MGP_AJ_G0025959.1 mouse_genomes_project 2 84411578 84412544 - MGP_AJ_P0055812 Olfr1100 protein_coding protein_coding MGP_AJ_T0055257.1 MGP_AJ_G0025796.1 mouse_genomes_project 2 68422918 68448984 + MGP_AJ_P0055257 Cybrd1 protein_coding protein_coding MGP_AJ_T0102485.1 MGP_AJ_G0040227.1 mouse_genomes_project 2 83931614 83933151 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0059359.1 MGP_AJ_G0026865.1 mouse_genomes_project 2 164560674 164640233 + MGP_AJ_P0059359 Ncoa3 protein_coding protein_coding MGP_AJ_T0059360.1 MGP_AJ_G0026865.1 mouse_genomes_project 2 164560675 164641979 + MGP_AJ_P0059360 Ncoa3 protein_coding protein_coding MGP_AJ_T0059361.1 MGP_AJ_G0026865.1 mouse_genomes_project 2 164615574 164620028 + Ncoa3 protein_coding processed_transcript MGP_AJ_T0059362.1 MGP_AJ_G0026865.1 mouse_genomes_project 2 164629616 164634981 + Ncoa3 protein_coding retained_intron MGP_AJ_T0059363.1 MGP_AJ_G0026865.1 mouse_genomes_project 2 164636217 164638966 + Ncoa3 protein_coding retained_intron MGP_AJ_T0003963.1 MGP_AJ_G0003533.1 mouse_genomes_project 2 33022002 33026198 + 9030204H09Rik antisense antisense MGP_AJ_T0007179.1 MGP_AJ_G0005883.1 mouse_genomes_project 2 29672261 29675219 + Gm13412 lincRNA lincRNA MGP_AJ_T0058985.1 MGP_AJ_G0026768.1 mouse_genomes_project 2 158838622 158840851 - MGP_AJ_P0058985 Gm826 protein_coding protein_coding MGP_AJ_T0058986.1 MGP_AJ_G0026768.1 mouse_genomes_project 2 158838973 158862325 - Gm826 protein_coding processed_transcript MGP_AJ_T0058987.1 MGP_AJ_G0026768.1 mouse_genomes_project 2 158839090 158855659 - MGP_AJ_P0058987 Gm826 protein_coding protein_coding MGP_AJ_T0013412.1 MGP_AJ_G0011507.1 mouse_genomes_project 2 1936124 1936349 - processed_pseudogene processed_pseudogene MGP_AJ_T0055422.1 MGP_AJ_G0025827.1 mouse_genomes_project 2 72079028 72081509 + MGP_AJ_P0055422 Hoxd9 protein_coding protein_coding MGP_AJ_T0056399.1 MGP_AJ_G0026155.1 mouse_genomes_project 2 99556917 99808468 - MGP_AJ_P0056399 Ldlrad3 protein_coding protein_coding MGP_AJ_T0056400.1 MGP_AJ_G0026155.1 mouse_genomes_project 2 99556917 99808441 - MGP_AJ_P0056400 Ldlrad3 protein_coding protein_coding MGP_AJ_T0056401.1 MGP_AJ_G0026155.1 mouse_genomes_project 2 99733279 99761083 - Ldlrad3 protein_coding processed_transcript MGP_AJ_T0011517.1 MGP_AJ_G0009639.1 mouse_genomes_project 2 145359391 145359715 - Gm22261 misc_RNA misc_RNA MGP_AJ_T0013737.1 MGP_AJ_G0011832.1 mouse_genomes_project 2 118859780 118860547 + processed_pseudogene processed_pseudogene MGP_AJ_T0099788.1 MGP_AJ_G0037754.1 mouse_genomes_project 2 131068947 131069115 + Gm25704 snRNA snRNA MGP_AJ_T0058210.1 MGP_AJ_G0026594.1 mouse_genomes_project 2 148788180 148813867 - MGP_AJ_P0058210 Apmap protein_coding protein_coding MGP_AJ_T0058211.1 MGP_AJ_G0026594.1 mouse_genomes_project 2 148792221 148805554 - Apmap protein_coding processed_transcript MGP_AJ_T0058212.1 MGP_AJ_G0026594.1 mouse_genomes_project 2 148799442 148813844 - Apmap protein_coding processed_transcript MGP_AJ_T0013662.1 MGP_AJ_G0011757.1 mouse_genomes_project 2 89261302 89261540 - processed_pseudogene processed_pseudogene MGP_AJ_T0101766.1 MGP_AJ_G0039689.1 mouse_genomes_project 2 36411812 36416562 - transcribed_processed_pseudogene processed_transcript MGP_AJ_T0101767.1 MGP_AJ_G0039689.1 mouse_genomes_project 2 36415543 36416316 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0010350.1 MGP_AJ_G0008472.1 mouse_genomes_project 2 7530152 7530263 + miRNA miRNA MGP_AJ_T0059625.1 MGP_AJ_G0026931.1 mouse_genomes_project 2 173019242 173074121 + MGP_AJ_P0059625 Gnas protein_coding protein_coding MGP_AJ_T0059626.1 MGP_AJ_G0026931.1 mouse_genomes_project 2 173019242 173082746 + MGP_AJ_P0059626 Gnas protein_coding protein_coding MGP_AJ_T0059627.1 MGP_AJ_G0026931.1 mouse_genomes_project 2 173019242 173031679 + MGP_AJ_P0059627 Gnas protein_coding protein_coding MGP_AJ_T0059628.1 MGP_AJ_G0026931.1 mouse_genomes_project 2 173020280 173074121 + MGP_AJ_P0059628 Gnas protein_coding protein_coding MGP_AJ_T0059629.1 MGP_AJ_G0026931.1 mouse_genomes_project 2 173032643 173082504 + Gnas protein_coding processed_transcript MGP_AJ_T0059630.1 MGP_AJ_G0026931.1 mouse_genomes_project 2 173032643 173082504 + MGP_AJ_P0059630 Gnas protein_coding protein_coding MGP_AJ_T0059631.1 MGP_AJ_G0026931.1 mouse_genomes_project 2 173032643 173036803 + MGP_AJ_P0059631 Gnas protein_coding protein_coding MGP_AJ_T0059632.1 MGP_AJ_G0026931.1 mouse_genomes_project 2 173032643 173082746 + MGP_AJ_P0059632 Gnas protein_coding protein_coding MGP_AJ_T0059633.1 MGP_AJ_G0026931.1 mouse_genomes_project 2 173032643 173082714 + MGP_AJ_P0059633 Gnas protein_coding protein_coding MGP_AJ_T0059634.1 MGP_AJ_G0026931.1 mouse_genomes_project 2 173062409 173081242 + Gnas protein_coding processed_transcript MGP_AJ_T0059635.1 MGP_AJ_G0026931.1 mouse_genomes_project 2 173062538 173082504 + Gnas protein_coding processed_transcript MGP_AJ_T0059636.1 MGP_AJ_G0026931.1 mouse_genomes_project 2 173062569 173063788 + Gnas protein_coding processed_transcript MGP_AJ_T0059637.1 MGP_AJ_G0026931.1 mouse_genomes_project 2 173062596 173074121 + Gnas protein_coding processed_transcript MGP_AJ_T0059638.1 MGP_AJ_G0026931.1 mouse_genomes_project 2 173062862 173081280 + Gnas protein_coding processed_transcript MGP_AJ_T0059639.1 MGP_AJ_G0026931.1 mouse_genomes_project 2 173064846 173082746 + MGP_AJ_P0059639 Gnas protein_coding protein_coding MGP_AJ_T0059640.1 MGP_AJ_G0026931.1 mouse_genomes_project 2 173064937 173082746 + MGP_AJ_P0059640 Gnas protein_coding protein_coding MGP_AJ_T0059641.1 MGP_AJ_G0026931.1 mouse_genomes_project 2 173065127 173074121 + MGP_AJ_P0059641 Gnas protein_coding protein_coding MGP_AJ_T0059642.1 MGP_AJ_G0026931.1 mouse_genomes_project 2 173065136 173082750 + MGP_AJ_P0059642 Gnas protein_coding protein_coding MGP_AJ_T0059644.1 MGP_AJ_G0026931.1 mouse_genomes_project 2 173077702 173081410 + Gnas protein_coding retained_intron MGP_AJ_T0059645.1 MGP_AJ_G0026931.1 mouse_genomes_project 2 173080650 173081729 + Gnas protein_coding retained_intron MGP_AJ_T0058178.1 MGP_AJ_G0026578.1 mouse_genomes_project 2 146897144 146901057 + MGP_AJ_P0058178 8030411F24Rik protein_coding protein_coding MGP_AJ_T0059288.1 MGP_AJ_G0026855.1 mouse_genomes_project 2 163655266 163781067 - MGP_AJ_P0059288 Cdh22 protein_coding protein_coding MGP_AJ_T0059289.1 MGP_AJ_G0026855.1 mouse_genomes_project 2 163656086 163726936 - MGP_AJ_P0059289 Cdh22 protein_coding nonsense_mediated_decay MGP_AJ_T0053184.1 MGP_AJ_G0025426.1 mouse_genomes_project 2 22452512 22455843 - MGP_AJ_P0053184 Ptgds protein_coding protein_coding MGP_AJ_T0053185.1 MGP_AJ_G0025426.1 mouse_genomes_project 2 22452512 22455639 - MGP_AJ_P0053185 Ptgds protein_coding protein_coding MGP_AJ_T0053186.1 MGP_AJ_G0025426.1 mouse_genomes_project 2 22452512 22455546 - MGP_AJ_P0053186 Ptgds protein_coding protein_coding MGP_AJ_T0053187.1 MGP_AJ_G0025426.1 mouse_genomes_project 2 22452514 22455180 - Ptgds protein_coding retained_intron MGP_AJ_T0053188.1 MGP_AJ_G0025426.1 mouse_genomes_project 2 22452515 22454954 - Ptgds protein_coding processed_transcript MGP_AJ_T0102504.1 MGP_AJ_G0040246.1 mouse_genomes_project 2 87697996 87698921 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0052454.1 MGP_AJ_G0025305.1 mouse_genomes_project 2 2946696 3052795 + MGP_AJ_P0052454 Upf2 protein_coding protein_coding MGP_AJ_T0052455.1 MGP_AJ_G0025305.1 mouse_genomes_project 2 3019284 3052790 + MGP_AJ_P0052455 Upf2 protein_coding protein_coding MGP_AJ_T0052456.1 MGP_AJ_G0025305.1 mouse_genomes_project 2 3046417 3051594 + Upf2 protein_coding processed_transcript MGP_AJ_T0055762.1 MGP_AJ_G0025912.1 mouse_genomes_project 2 83208407 83209343 + MGP_AJ_P0055762 Olfr1018 protein_coding protein_coding MGP_AJ_T0059070.1 MGP_AJ_G0026787.1 mouse_genomes_project 2 161952668 161968050 - MGP_AJ_P0059070 Oser1 protein_coding protein_coding MGP_AJ_T0059071.1 MGP_AJ_G0026787.1 mouse_genomes_project 2 161952699 161973194 - MGP_AJ_P0059071 Oser1 protein_coding protein_coding MGP_AJ_T0059072.1 MGP_AJ_G0026787.1 mouse_genomes_project 2 161953975 161967666 - Oser1 protein_coding processed_transcript MGP_AJ_T0059073.1 MGP_AJ_G0026787.1 mouse_genomes_project 2 161954009 161959633 - Oser1 protein_coding processed_transcript MGP_AJ_T0059074.1 MGP_AJ_G0026787.1 mouse_genomes_project 2 161954304 161973194 - Oser1 protein_coding processed_transcript MGP_AJ_T0059075.1 MGP_AJ_G0026787.1 mouse_genomes_project 2 161954493 161964989 - MGP_AJ_P0059075 Oser1 protein_coding protein_coding MGP_AJ_T0059076.1 MGP_AJ_G0026787.1 mouse_genomes_project 2 161971373 161973047 - Oser1 protein_coding processed_transcript MGP_AJ_T0007337.1 MGP_AJ_G0006011.1 mouse_genomes_project 2 130648264 130705650 + AU019990 lincRNA lincRNA MGP_AJ_T0007338.1 MGP_AJ_G0006011.1 mouse_genomes_project 2 130648264 130702734 + AU019990 lincRNA lincRNA MGP_AJ_T0004155.1 MGP_AJ_G0003671.1 mouse_genomes_project 2 162187242 162188194 + 0610039K10Rik antisense antisense MGP_AJ_T0004156.1 MGP_AJ_G0003671.1 mouse_genomes_project 2 162187242 162188193 + 0610039K10Rik antisense antisense MGP_AJ_T0058302.1 MGP_AJ_G0026615.1 mouse_genomes_project 2 150277952 150287076 + MGP_AJ_P0058302 Slc52a3 protein_coding protein_coding MGP_AJ_T0058882.1 MGP_AJ_G0026746.1 mouse_genomes_project 2 155838475 155856932 - Ghrh protein_coding processed_transcript MGP_AJ_T0058883.1 MGP_AJ_G0026746.1 mouse_genomes_project 2 155838475 155856071 - MGP_AJ_P0058883 Ghrh protein_coding protein_coding MGP_AJ_T0058884.1 MGP_AJ_G0026746.1 mouse_genomes_project 2 155838475 155846342 - MGP_AJ_P0058884 Ghrh protein_coding protein_coding MGP_AJ_T0101077.1 MGP_AJ_G0039043.1 mouse_genomes_project 2 149084242 149084386 + Gm23598 snoRNA snoRNA MGP_AJ_T0007431.1 MGP_AJ_G0006090.1 mouse_genomes_project 2 170678798 170679799 - Gm14272 lincRNA lincRNA MGP_AJ_T0054163.1 MGP_AJ_G0025589.1 mouse_genomes_project 2 29722125 29723136 + Pip5kl1 protein_coding processed_transcript MGP_AJ_T0054164.1 MGP_AJ_G0025589.1 mouse_genomes_project 2 29723046 29731122 + MGP_AJ_P0054164 Pip5kl1 protein_coding protein_coding MGP_AJ_T0054165.1 MGP_AJ_G0025589.1 mouse_genomes_project 2 29723171 29731111 + MGP_AJ_P0054165 Pip5kl1 protein_coding nonsense_mediated_decay MGP_AJ_T0054166.1 MGP_AJ_G0025589.1 mouse_genomes_project 2 29727266 29731112 + Pip5kl1 protein_coding retained_intron MGP_AJ_T0059462.1 MGP_AJ_G0026885.1 mouse_genomes_project 2 166308124 166309628 + MGP_AJ_P0059462 Cebpb protein_coding protein_coding MGP_AJ_T0058848.1 MGP_AJ_G0026740.1 mouse_genomes_project 2 155515603 155578585 - MGP_AJ_P0058848 Soga1 protein_coding protein_coding MGP_AJ_T0058849.1 MGP_AJ_G0026740.1 mouse_genomes_project 2 155520662 155527250 - Soga1 protein_coding processed_transcript MGP_AJ_T0058850.1 MGP_AJ_G0026740.1 mouse_genomes_project 2 155536766 155539955 - Soga1 protein_coding processed_transcript MGP_AJ_T0007174.1 MGP_AJ_G0005879.1 mouse_genomes_project 2 25368584 25377665 - Gm13373 lincRNA lincRNA MGP_AJ_T0059599.1 MGP_AJ_G0026922.1 mouse_genomes_project 2 171919705 171931650 - MGP_AJ_P0059599 Zbp1 protein_coding protein_coding MGP_AJ_T0059600.1 MGP_AJ_G0026922.1 mouse_genomes_project 2 171919708 171931624 - Zbp1 protein_coding retained_intron MGP_AJ_T0059601.1 MGP_AJ_G0026922.1 mouse_genomes_project 2 171926504 171931637 - MGP_AJ_P0059601 Zbp1 protein_coding protein_coding MGP_AJ_T0007425.1 MGP_AJ_G0006085.1 mouse_genomes_project 2 168864480 168866085 - Gm17619 lincRNA lincRNA MGP_AJ_T0054107.1 MGP_AJ_G0025580.1 mouse_genomes_project 2 29496848 29522582 + MGP_AJ_P0054107 Ciz1 protein_coding protein_coding MGP_AJ_T0054108.1 MGP_AJ_G0025580.1 mouse_genomes_project 2 29507323 29511721 + Ciz1 protein_coding processed_transcript MGP_AJ_T0054109.1 MGP_AJ_G0025580.1 mouse_genomes_project 2 29507323 29511842 + MGP_AJ_P0054109 Ciz1 protein_coding protein_coding MGP_AJ_T0054110.1 MGP_AJ_G0025580.1 mouse_genomes_project 2 29507374 29514436 + MGP_AJ_P0054110 Ciz1 protein_coding protein_coding MGP_AJ_T0054111.1 MGP_AJ_G0025580.1 mouse_genomes_project 2 29507511 29522588 + MGP_AJ_P0054111 Ciz1 protein_coding protein_coding MGP_AJ_T0054112.1 MGP_AJ_G0025580.1 mouse_genomes_project 2 29507511 29522582 + MGP_AJ_P0054112 Ciz1 protein_coding protein_coding MGP_AJ_T0054113.1 MGP_AJ_G0025580.1 mouse_genomes_project 2 29507666 29525254 + Ciz1 protein_coding retained_intron MGP_AJ_T0054114.1 MGP_AJ_G0025580.1 mouse_genomes_project 2 29507746 29510165 + Ciz1 protein_coding processed_transcript MGP_AJ_T0054115.1 MGP_AJ_G0025580.1 mouse_genomes_project 2 29507867 29514637 + MGP_AJ_P0054115 Ciz1 protein_coding nonsense_mediated_decay MGP_AJ_T0054116.1 MGP_AJ_G0025580.1 mouse_genomes_project 2 29508069 29509301 + Ciz1 protein_coding retained_intron MGP_AJ_T0054117.1 MGP_AJ_G0025580.1 mouse_genomes_project 2 29508118 29522588 + MGP_AJ_P0054117 Ciz1 protein_coding protein_coding MGP_AJ_T0054118.1 MGP_AJ_G0025580.1 mouse_genomes_project 2 29508123 29522583 + MGP_AJ_P0054118 Ciz1 protein_coding protein_coding MGP_AJ_T0054119.1 MGP_AJ_G0025580.1 mouse_genomes_project 2 29509658 29511828 + Ciz1 protein_coding retained_intron MGP_AJ_T0054120.1 MGP_AJ_G0025580.1 mouse_genomes_project 2 29511725 29515607 + MGP_AJ_P0054120 Ciz1 protein_coding protein_coding MGP_AJ_T0054121.1 MGP_AJ_G0025580.1 mouse_genomes_project 2 29511785 29516619 + MGP_AJ_P0054121 Ciz1 protein_coding protein_coding MGP_AJ_T0054122.1 MGP_AJ_G0025580.1 mouse_genomes_project 2 29514375 29516064 + Ciz1 protein_coding processed_transcript MGP_AJ_T0054123.1 MGP_AJ_G0025580.1 mouse_genomes_project 2 29515222 29519821 + MGP_AJ_P0054123 Ciz1 protein_coding protein_coding MGP_AJ_T0054124.1 MGP_AJ_G0025580.1 mouse_genomes_project 2 29516148 29518839 + Ciz1 protein_coding retained_intron MGP_AJ_T0054125.1 MGP_AJ_G0025580.1 mouse_genomes_project 2 29516630 29519283 + Ciz1 protein_coding retained_intron MGP_AJ_T0054126.1 MGP_AJ_G0025580.1 mouse_genomes_project 2 29518491 29522584 + Ciz1 protein_coding retained_intron MGP_AJ_T0054127.1 MGP_AJ_G0025580.1 mouse_genomes_project 2 29519390 29520673 + Ciz1 protein_coding retained_intron MGP_AJ_T0054128.1 MGP_AJ_G0025580.1 mouse_genomes_project 2 29519771 29524510 + MGP_AJ_P0054128 Ciz1 protein_coding protein_coding MGP_AJ_T0003998.1 MGP_AJ_G0003561.1 mouse_genomes_project 2 67189715 67192096 + Mettl5os antisense antisense MGP_AJ_T0101010.1 MGP_AJ_G0038976.1 mouse_genomes_project 2 8045475 8045604 - Gm23877 snoRNA snoRNA MGP_AJ_T0054717.1 MGP_AJ_G0025697.1 mouse_genomes_project 2 46273454 46588717 + MGP_AJ_P0054717 Mbd5 protein_coding protein_coding MGP_AJ_T0054718.1 MGP_AJ_G0025697.1 mouse_genomes_project 2 46273464 46446171 + Mbd5 protein_coding processed_transcript MGP_AJ_T0054719.1 MGP_AJ_G0025697.1 mouse_genomes_project 2 46273469 46649146 + MGP_AJ_P0054719 Mbd5 protein_coding protein_coding MGP_AJ_T0054720.1 MGP_AJ_G0025697.1 mouse_genomes_project 2 46273908 46347310 + Mbd5 protein_coding processed_transcript MGP_AJ_T0054721.1 MGP_AJ_G0025697.1 mouse_genomes_project 2 46273909 46278081 + Mbd5 protein_coding processed_transcript MGP_AJ_T0054722.1 MGP_AJ_G0025697.1 mouse_genomes_project 2 46274011 46446035 + Mbd5 protein_coding processed_transcript MGP_AJ_T0054723.1 MGP_AJ_G0025697.1 mouse_genomes_project 2 46274089 46573750 + Mbd5 protein_coding processed_transcript MGP_AJ_T0054724.1 MGP_AJ_G0025697.1 mouse_genomes_project 2 46274095 46392705 + Mbd5 protein_coding processed_transcript MGP_AJ_T0054725.1 MGP_AJ_G0025697.1 mouse_genomes_project 2 46574161 46653105 + MGP_AJ_P0054725 Mbd5 protein_coding protein_coding MGP_AJ_T0054726.1 MGP_AJ_G0025697.1 mouse_genomes_project 2 46574362 46600790 + MGP_AJ_P0054726 Mbd5 protein_coding protein_coding MGP_AJ_T0054727.1 MGP_AJ_G0025697.1 mouse_genomes_project 2 46584720 46649172 + MGP_AJ_P0054727 Mbd5 protein_coding protein_coding MGP_AJ_T0054728.1 MGP_AJ_G0025697.1 mouse_genomes_project 2 46600894 46658820 + MGP_AJ_P0054728 Mbd5 protein_coding nonsense_mediated_decay MGP_AJ_T0054729.1 MGP_AJ_G0025697.1 mouse_genomes_project 2 46608174 46648826 + MGP_AJ_P0054729 Mbd5 protein_coding nonsense_mediated_decay MGP_AJ_T0054730.1 MGP_AJ_G0025697.1 mouse_genomes_project 2 46608175 46648837 + MGP_AJ_P0054730 Mbd5 protein_coding nonsense_mediated_decay MGP_AJ_T0054731.1 MGP_AJ_G0025697.1 mouse_genomes_project 2 46608323 46649060 + MGP_AJ_P0054731 Mbd5 protein_coding protein_coding MGP_AJ_T0013675.1 MGP_AJ_G0011770.1 mouse_genomes_project 2 94639911 94640581 + processed_pseudogene processed_pseudogene MGP_AJ_T0057579.1 MGP_AJ_G0026436.1 mouse_genomes_project 2 126463904 126465183 + MGP_AJ_P0057579 Gm29010 protein_coding protein_coding MGP_AJ_T0053964.1 MGP_AJ_G0025560.1 mouse_genomes_project 2 28263744 28324073 + MGP_AJ_P0053964 Gpr107 protein_coding protein_coding MGP_AJ_T0053965.1 MGP_AJ_G0025560.1 mouse_genomes_project 2 28263967 28280865 + Gpr107 protein_coding retained_intron MGP_AJ_T0053966.1 MGP_AJ_G0025560.1 mouse_genomes_project 2 28263985 28303868 + Gpr107 protein_coding retained_intron MGP_AJ_T0053967.1 MGP_AJ_G0025560.1 mouse_genomes_project 2 28263985 28267199 + Gpr107 protein_coding retained_intron MGP_AJ_T0053968.1 MGP_AJ_G0025560.1 mouse_genomes_project 2 28284095 28296625 + Gpr107 protein_coding processed_transcript MGP_AJ_T0053969.1 MGP_AJ_G0025560.1 mouse_genomes_project 2 28297048 28318890 + Gpr107 protein_coding retained_intron MGP_AJ_T0053970.1 MGP_AJ_G0025560.1 mouse_genomes_project 2 28297378 28300503 + Gpr107 protein_coding processed_transcript MGP_AJ_T0053971.1 MGP_AJ_G0025560.1 mouse_genomes_project 2 28300521 28319072 + Gpr107 protein_coding retained_intron MGP_AJ_T0053972.1 MGP_AJ_G0025560.1 mouse_genomes_project 2 28308497 28317439 + Gpr107 protein_coding processed_transcript MGP_AJ_T0053973.1 MGP_AJ_G0025560.1 mouse_genomes_project 2 28316361 28319793 + Gpr107 protein_coding retained_intron MGP_AJ_T0053974.1 MGP_AJ_G0025560.1 mouse_genomes_project 2 28319830 28324299 + Gpr107 protein_coding retained_intron MGP_AJ_T0057306.1 MGP_AJ_G0026369.1 mouse_genomes_project 2 120032148 120051532 + MGP_AJ_P0057306 Trim69 protein_coding protein_coding MGP_AJ_T0057307.1 MGP_AJ_G0026369.1 mouse_genomes_project 2 120032250 120051529 + Trim69 protein_coding processed_transcript MGP_AJ_T0102473.1 MGP_AJ_G0040215.1 mouse_genomes_project 2 82982925 82983855 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0060020.1 MGP_AJ_G0027005.1 mouse_genomes_project 2 180716120 180722612 + MGP_AJ_P0060020 Polr3k protein_coding protein_coding MGP_AJ_T0060021.1 MGP_AJ_G0027005.1 mouse_genomes_project 2 180716143 180717993 + Polr3k protein_coding retained_intron MGP_AJ_T0013667.1 MGP_AJ_G0011762.1 mouse_genomes_project 2 90509224 90509646 - processed_pseudogene processed_pseudogene MGP_AJ_T0059801.1 MGP_AJ_G0026973.1 mouse_genomes_project 2 179820233 179835469 + MGP_AJ_P0059801 Arfgap1 protein_coding protein_coding MGP_AJ_T0059802.1 MGP_AJ_G0026973.1 mouse_genomes_project 2 179820242 179835537 + MGP_AJ_P0059802 Arfgap1 protein_coding protein_coding MGP_AJ_T0059803.1 MGP_AJ_G0026973.1 mouse_genomes_project 2 179820253 179834711 + MGP_AJ_P0059803 Arfgap1 protein_coding protein_coding MGP_AJ_T0059804.1 MGP_AJ_G0026973.1 mouse_genomes_project 2 179820273 179835471 + Arfgap1 protein_coding retained_intron MGP_AJ_T0059805.1 MGP_AJ_G0026973.1 mouse_genomes_project 2 179820275 179835457 + Arfgap1 protein_coding processed_transcript MGP_AJ_T0059806.1 MGP_AJ_G0026973.1 mouse_genomes_project 2 179820285 179835471 + MGP_AJ_P0059806 Arfgap1 protein_coding protein_coding MGP_AJ_T0059807.1 MGP_AJ_G0026973.1 mouse_genomes_project 2 179820287 179825939 + Arfgap1 protein_coding retained_intron MGP_AJ_T0059808.1 MGP_AJ_G0026973.1 mouse_genomes_project 2 179820308 179835322 + MGP_AJ_P0059808 Arfgap1 protein_coding protein_coding MGP_AJ_T0059809.1 MGP_AJ_G0026973.1 mouse_genomes_project 2 179824049 179834484 + MGP_AJ_P0059809 Arfgap1 protein_coding protein_coding MGP_AJ_T0059810.1 MGP_AJ_G0026973.1 mouse_genomes_project 2 179824064 179834381 + MGP_AJ_P0059810 Arfgap1 protein_coding protein_coding MGP_AJ_T0059811.1 MGP_AJ_G0026973.1 mouse_genomes_project 2 179826495 179829763 + Arfgap1 protein_coding retained_intron MGP_AJ_T0059812.1 MGP_AJ_G0026973.1 mouse_genomes_project 2 179826512 179831053 + Arfgap1 protein_coding retained_intron MGP_AJ_T0059813.1 MGP_AJ_G0026973.1 mouse_genomes_project 2 179826840 179830535 + Arfgap1 protein_coding retained_intron MGP_AJ_T0059814.1 MGP_AJ_G0026973.1 mouse_genomes_project 2 179833359 179834408 + Arfgap1 protein_coding processed_transcript MGP_AJ_T0007435.1 MGP_AJ_G0006094.1 mouse_genomes_project 2 173586673 173600802 - Gm14618 lincRNA lincRNA MGP_AJ_T0011514.1 MGP_AJ_G0009636.1 mouse_genomes_project 2 128748591 128748960 - Gm24893 misc_RNA misc_RNA MGP_AJ_T0099773.1 MGP_AJ_G0037739.1 mouse_genomes_project 2 83269473 83269653 - Gm24037 snRNA snRNA MGP_AJ_T0055915.1 MGP_AJ_G0026046.1 mouse_genomes_project 2 86797798 86798734 - MGP_AJ_P0055915 Olfr1223 protein_coding protein_coding MGP_AJ_T0057377.1 MGP_AJ_G0026386.1 mouse_genomes_project 2 123031398 123035774 - Myef2 protein_coding processed_transcript MGP_AJ_T0057378.1 MGP_AJ_G0026386.1 mouse_genomes_project 2 123033041 123071377 - MGP_AJ_P0057378 Myef2 protein_coding nonsense_mediated_decay MGP_AJ_T0057379.1 MGP_AJ_G0026386.1 mouse_genomes_project 2 123033338 123071408 - MGP_AJ_P0057379 Myef2 protein_coding protein_coding MGP_AJ_T0057380.1 MGP_AJ_G0026386.1 mouse_genomes_project 2 123034511 123071405 - MGP_AJ_P0057380 Myef2 protein_coding protein_coding MGP_AJ_T0057381.1 MGP_AJ_G0026386.1 mouse_genomes_project 2 123034512 123071443 - MGP_AJ_P0057381 Myef2 protein_coding protein_coding MGP_AJ_T0057382.1 MGP_AJ_G0026386.1 mouse_genomes_project 2 123034512 123071442 - MGP_AJ_P0057382 Myef2 protein_coding protein_coding MGP_AJ_T0057383.1 MGP_AJ_G0026386.1 mouse_genomes_project 2 123035596 123064656 - MGP_AJ_P0057383 Myef2 protein_coding protein_coding MGP_AJ_T0057384.1 MGP_AJ_G0026386.1 mouse_genomes_project 2 123043039 123071196 - MGP_AJ_P0057384 Myef2 protein_coding protein_coding MGP_AJ_T0057385.1 MGP_AJ_G0026386.1 mouse_genomes_project 2 123046972 123071357 - Myef2 protein_coding retained_intron MGP_AJ_T0011491.1 MGP_AJ_G0009613.1 mouse_genomes_project 2 21549741 21550066 + Gm25455 misc_RNA misc_RNA MGP_AJ_T0059760.1 MGP_AJ_G0026963.1 mouse_genomes_project 2 179432083 179438645 + MGP_AJ_P0059760 Ogfr protein_coding protein_coding MGP_AJ_T0059761.1 MGP_AJ_G0026963.1 mouse_genomes_project 2 179432300 179436684 + Ogfr protein_coding retained_intron MGP_AJ_T0101067.1 MGP_AJ_G0039033.1 mouse_genomes_project 2 128315152 128315285 + Gm24451 snoRNA snoRNA MGP_AJ_T0013464.1 MGP_AJ_G0011559.1 mouse_genomes_project 2 20623985 20624889 + processed_pseudogene processed_pseudogene MGP_AJ_T0102496.1 MGP_AJ_G0040238.1 mouse_genomes_project 2 85532106 85532998 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0013728.1 MGP_AJ_G0011823.1 mouse_genomes_project 2 112805536 112806438 - processed_pseudogene processed_pseudogene MGP_AJ_T0007316.1 MGP_AJ_G0005994.1 mouse_genomes_project 2 115580234 115587583 - Gm13985 lincRNA lincRNA MGP_AJ_T0053318.1 MGP_AJ_G0025459.1 mouse_genomes_project 2 23337419 23365472 + MGP_AJ_P0053318 Gpsm1 protein_coding protein_coding MGP_AJ_T0053319.1 MGP_AJ_G0025459.1 mouse_genomes_project 2 23337496 23365472 + MGP_AJ_P0053319 Gpsm1 protein_coding protein_coding MGP_AJ_T0053320.1 MGP_AJ_G0025459.1 mouse_genomes_project 2 23342344 23365472 + MGP_AJ_P0053320 Gpsm1 protein_coding protein_coding MGP_AJ_T0053321.1 MGP_AJ_G0025459.1 mouse_genomes_project 2 23346162 23365472 + MGP_AJ_P0053321 Gpsm1 protein_coding protein_coding MGP_AJ_T0053322.1 MGP_AJ_G0025459.1 mouse_genomes_project 2 23347904 23350258 + Gpsm1 protein_coding processed_transcript MGP_AJ_T0053323.1 MGP_AJ_G0025459.1 mouse_genomes_project 2 23348415 23357685 + Gpsm1 protein_coding processed_transcript MGP_AJ_T0053324.1 MGP_AJ_G0025459.1 mouse_genomes_project 2 23348605 23357155 + Gpsm1 protein_coding processed_transcript MGP_AJ_T0053325.1 MGP_AJ_G0025459.1 mouse_genomes_project 2 23352884 23365472 + MGP_AJ_P0053325 Gpsm1 protein_coding protein_coding MGP_AJ_T0053326.1 MGP_AJ_G0025459.1 mouse_genomes_project 2 23352927 23357766 + MGP_AJ_P0053326 Gpsm1 protein_coding protein_coding MGP_AJ_T0053327.1 MGP_AJ_G0025459.1 mouse_genomes_project 2 23356665 23362566 + Gpsm1 protein_coding processed_transcript MGP_AJ_T0053328.1 MGP_AJ_G0025459.1 mouse_genomes_project 2 23356682 23361959 + Gpsm1 protein_coding processed_transcript MGP_AJ_T0053329.1 MGP_AJ_G0025459.1 mouse_genomes_project 2 23359523 23364510 + Gpsm1 protein_coding processed_transcript MGP_AJ_T0053330.1 MGP_AJ_G0025459.1 mouse_genomes_project 2 23361472 23364145 + Gpsm1 protein_coding processed_transcript MGP_AJ_T0056896.1 MGP_AJ_G0026296.1 mouse_genomes_project 2 116948739 116951809 + MGP_AJ_P0056896 Gm14137 protein_coding protein_coding MGP_AJ_T0007428.1 MGP_AJ_G0006088.1 mouse_genomes_project 2 169908155 169910669 + Gm14640 lincRNA lincRNA MGP_AJ_T0013704.1 MGP_AJ_G0011799.1 mouse_genomes_project 2 104596384 104596852 + processed_pseudogene processed_pseudogene MGP_AJ_T0052841.1 MGP_AJ_G0025367.1 mouse_genomes_project 2 18408337 18872089 + MGP_AJ_P0052841 Gpr158 protein_coding protein_coding MGP_AJ_T0052842.1 MGP_AJ_G0025367.1 mouse_genomes_project 2 18408362 18854845 + Gpr158 protein_coding retained_intron MGP_AJ_T0058996.1 MGP_AJ_G0026772.1 mouse_genomes_project 2 159261721 159292913 + MGP_AJ_P0058996 Plcg1 protein_coding nonsense_mediated_decay MGP_AJ_T0058997.1 MGP_AJ_G0026772.1 mouse_genomes_project 2 159261731 159306369 + MGP_AJ_P0058997 Plcg1 protein_coding protein_coding MGP_AJ_T0058998.1 MGP_AJ_G0026772.1 mouse_genomes_project 2 159262120 159278299 + MGP_AJ_P0058998 Plcg1 protein_coding protein_coding MGP_AJ_T0058999.1 MGP_AJ_G0026772.1 mouse_genomes_project 2 159262154 159293697 + MGP_AJ_P0058999 Plcg1 protein_coding protein_coding MGP_AJ_T0059000.1 MGP_AJ_G0026772.1 mouse_genomes_project 2 159271397 159292917 + Plcg1 protein_coding processed_transcript MGP_AJ_T0059002.1 MGP_AJ_G0026772.1 mouse_genomes_project 2 159282897 159292566 + Plcg1 protein_coding retained_intron MGP_AJ_T0059003.1 MGP_AJ_G0026772.1 mouse_genomes_project 2 159282962 159289318 + Plcg1 protein_coding retained_intron MGP_AJ_T0059004.1 MGP_AJ_G0026772.1 mouse_genomes_project 2 159284477 159285275 + Plcg1 protein_coding retained_intron MGP_AJ_T0059005.1 MGP_AJ_G0026772.1 mouse_genomes_project 2 159284957 159285580 + Plcg1 protein_coding retained_intron MGP_AJ_T0059006.1 MGP_AJ_G0026772.1 mouse_genomes_project 2 159284982 159289858 + Plcg1 protein_coding processed_transcript MGP_AJ_T0059007.1 MGP_AJ_G0026772.1 mouse_genomes_project 2 159285316 159287558 + Plcg1 protein_coding retained_intron MGP_AJ_T0059008.1 MGP_AJ_G0026772.1 mouse_genomes_project 2 159290528 159292628 + MGP_AJ_P0059008 Plcg1 protein_coding protein_coding MGP_AJ_T0057972.1 MGP_AJ_G0026525.1 mouse_genomes_project 2 134980522 135149056 + MGP_AJ_P0057972 Slx4ip protein_coding protein_coding MGP_AJ_T0057973.1 MGP_AJ_G0026525.1 mouse_genomes_project 2 134980805 135086487 + MGP_AJ_P0057973 Slx4ip protein_coding protein_coding MGP_AJ_T0057974.1 MGP_AJ_G0026525.1 mouse_genomes_project 2 134981472 135147678 + Slx4ip protein_coding processed_transcript MGP_AJ_T0057975.1 MGP_AJ_G0026525.1 mouse_genomes_project 2 134995231 135149185 + MGP_AJ_P0057975 Slx4ip protein_coding protein_coding MGP_AJ_T0007343.1 MGP_AJ_G0006016.1 mouse_genomes_project 2 133743986 133750919 - Gm14211 lincRNA lincRNA MGP_AJ_T0017790.1 MGP_AJ_G0015411.1 mouse_genomes_project 2 84586827 84591121 - Gm13734 processed_transcript processed_transcript MGP_AJ_T0053432.1 MGP_AJ_G0025475.1 mouse_genomes_project 2 23932793 23938209 - MGP_AJ_P0053432 Med22 protein_coding protein_coding MGP_AJ_T0053433.1 MGP_AJ_G0025475.1 mouse_genomes_project 2 23933119 23938101 - MGP_AJ_P0053433 Med22 protein_coding protein_coding MGP_AJ_T0053434.1 MGP_AJ_G0025475.1 mouse_genomes_project 2 23935640 23938110 - MGP_AJ_P0053434 Med22 protein_coding protein_coding MGP_AJ_T0054504.1 MGP_AJ_G0025650.1 mouse_genomes_project 2 33973484 33976781 + MGP_AJ_P0054504 Olfr348 protein_coding protein_coding MGP_AJ_T0054505.1 MGP_AJ_G0025650.1 mouse_genomes_project 2 33975734 33976781 + MGP_AJ_P0054505 Olfr348 protein_coding protein_coding MGP_AJ_T0059290.1 MGP_AJ_G0026856.1 mouse_genomes_project 2 163824454 163825740 - Slc35c2 protein_coding retained_intron MGP_AJ_T0059291.1 MGP_AJ_G0026856.1 mouse_genomes_project 2 163824454 163838006 - MGP_AJ_P0059291 Slc35c2 protein_coding protein_coding MGP_AJ_T0059292.1 MGP_AJ_G0026856.1 mouse_genomes_project 2 163824454 163838078 - MGP_AJ_P0059292 Slc35c2 protein_coding protein_coding MGP_AJ_T0059293.1 MGP_AJ_G0026856.1 mouse_genomes_project 2 163824454 163838006 - MGP_AJ_P0059293 Slc35c2 protein_coding protein_coding MGP_AJ_T0059294.1 MGP_AJ_G0026856.1 mouse_genomes_project 2 163824454 163838120 - MGP_AJ_P0059294 Slc35c2 protein_coding protein_coding MGP_AJ_T0059295.1 MGP_AJ_G0026856.1 mouse_genomes_project 2 163824454 163838075 - MGP_AJ_P0059295 Slc35c2 protein_coding nonsense_mediated_decay MGP_AJ_T0059296.1 MGP_AJ_G0026856.1 mouse_genomes_project 2 163825352 163832474 - Slc35c2 protein_coding retained_intron MGP_AJ_T0059297.1 MGP_AJ_G0026856.1 mouse_genomes_project 2 163826252 163833619 - MGP_AJ_P0059297 Slc35c2 protein_coding protein_coding MGP_AJ_T0059298.1 MGP_AJ_G0026856.1 mouse_genomes_project 2 163826288 163833851 - MGP_AJ_P0059298 Slc35c2 protein_coding nonsense_mediated_decay MGP_AJ_T0059299.1 MGP_AJ_G0026856.1 mouse_genomes_project 2 163828519 163833851 - MGP_AJ_P0059299 Slc35c2 protein_coding protein_coding MGP_AJ_T0059300.1 MGP_AJ_G0026856.1 mouse_genomes_project 2 163828688 163838086 - MGP_AJ_P0059300 Slc35c2 protein_coding protein_coding MGP_AJ_T0059301.1 MGP_AJ_G0026856.1 mouse_genomes_project 2 163828688 163838087 - MGP_AJ_P0059301 Slc35c2 protein_coding protein_coding MGP_AJ_T0059302.1 MGP_AJ_G0026856.1 mouse_genomes_project 2 163828776 163836803 - MGP_AJ_P0059302 Slc35c2 protein_coding protein_coding MGP_AJ_T0059303.1 MGP_AJ_G0026856.1 mouse_genomes_project 2 163828781 163838078 - MGP_AJ_P0059303 Slc35c2 protein_coding protein_coding MGP_AJ_T0059304.1 MGP_AJ_G0026856.1 mouse_genomes_project 2 163829451 163838089 - Slc35c2 protein_coding retained_intron MGP_AJ_T0059305.1 MGP_AJ_G0026856.1 mouse_genomes_project 2 163833129 163838023 - MGP_AJ_P0059305 Slc35c2 protein_coding protein_coding MGP_AJ_T0052504.1 MGP_AJ_G0025312.1 mouse_genomes_project 2 6896021 6902521 - 9230102O04Rik protein_coding processed_transcript MGP_AJ_T0052505.1 MGP_AJ_G0025312.1 mouse_genomes_project 2 6896022 6896974 - MGP_AJ_P0052505 9230102O04Rik protein_coding protein_coding MGP_AJ_T0055419.1 MGP_AJ_G0025825.1 mouse_genomes_project 2 72060816 72068344 + Hoxd11 protein_coding processed_transcript MGP_AJ_T0055420.1 MGP_AJ_G0025825.1 mouse_genomes_project 2 72063582 72065500 + MGP_AJ_P0055420 Hoxd11 protein_coding protein_coding MGP_AJ_T0098442.1 MGP_AJ_G0036426.1 mouse_genomes_project 2 108220522 108220731 - pseudogene pseudogene MGP_AJ_T0052640.1 MGP_AJ_G0025331.1 mouse_genomes_project 2 10163892 10357543 - MGP_AJ_P0052640 Rsu1 protein_coding protein_coding MGP_AJ_T0052641.1 MGP_AJ_G0025331.1 mouse_genomes_project 2 10164083 10357625 - MGP_AJ_P0052641 Rsu1 protein_coding protein_coding MGP_AJ_T0052642.1 MGP_AJ_G0025331.1 mouse_genomes_project 2 10164266 10357604 - MGP_AJ_P0052642 Rsu1 protein_coding protein_coding MGP_AJ_T0052643.1 MGP_AJ_G0025331.1 mouse_genomes_project 2 10255584 10357518 - Rsu1 protein_coding retained_intron MGP_AJ_T0052644.1 MGP_AJ_G0025331.1 mouse_genomes_project 2 10303323 10357543 - Rsu1 protein_coding retained_intron MGP_AJ_T0052645.1 MGP_AJ_G0025331.1 mouse_genomes_project 2 10304093 10357480 - MGP_AJ_P0052645 Rsu1 protein_coding nonsense_mediated_decay MGP_AJ_T0052646.1 MGP_AJ_G0025331.1 mouse_genomes_project 2 10305916 10357431 - Rsu1 protein_coding retained_intron MGP_AJ_T0052647.1 MGP_AJ_G0025331.1 mouse_genomes_project 2 10306429 10357501 - MGP_AJ_P0052647 Rsu1 protein_coding protein_coding MGP_AJ_T0052648.1 MGP_AJ_G0025331.1 mouse_genomes_project 2 10353670 10357521 - Rsu1 protein_coding retained_intron MGP_AJ_T0052649.1 MGP_AJ_G0025331.1 mouse_genomes_project 2 10356969 10357506 - Rsu1 protein_coding retained_intron MGP_AJ_T0059424.1 MGP_AJ_G0026876.1 mouse_genomes_project 2 165710591 165797389 - MGP_AJ_P0059424 Kcnb1 protein_coding protein_coding MGP_AJ_T0052903.1 MGP_AJ_G0025380.1 mouse_genomes_project 2 21004991 21030399 - MGP_AJ_P0052903 Tbpl2 protein_coding protein_coding MGP_AJ_T0052904.1 MGP_AJ_G0025380.1 mouse_genomes_project 2 21005185 21030336 - MGP_AJ_P0052904 Tbpl2 protein_coding protein_coding MGP_AJ_T0013808.1 MGP_AJ_G0011903.1 mouse_genomes_project 2 145523122 145523431 - processed_pseudogene processed_pseudogene MGP_AJ_T0013674.1 MGP_AJ_G0011769.1 mouse_genomes_project 2 93775530 93775690 + processed_pseudogene processed_pseudogene MGP_AJ_T0013753.1 MGP_AJ_G0011848.1 mouse_genomes_project 2 127371674 127371775 - processed_pseudogene processed_pseudogene MGP_AJ_T0003971.1 MGP_AJ_G0003540.1 mouse_genomes_project 2 41341875 41347922 - Arhgap15os antisense antisense MGP_AJ_T0054523.1 MGP_AJ_G0025667.1 mouse_genomes_project 2 34416031 34416961 + MGP_AJ_P0054523 Olfr366 protein_coding protein_coding MGP_AJ_T0013761.1 MGP_AJ_G0011856.1 mouse_genomes_project 2 129369733 129370012 - processed_pseudogene processed_pseudogene MGP_AJ_T0013439.1 MGP_AJ_G0011534.1 mouse_genomes_project 2 14219359 14220165 + processed_pseudogene processed_pseudogene MGP_AJ_T0059965.1 MGP_AJ_G0026996.1 mouse_genomes_project 2 180443131 180469823 + MGP_AJ_P0059965 Prpf6 protein_coding protein_coding MGP_AJ_T0059969.1 MGP_AJ_G0026996.1 mouse_genomes_project 2 180453619 180509383 + MGP_AJ_P0059969 Prpf6 protein_coding protein_coding MGP_AJ_T0059970.1 MGP_AJ_G0026996.1 mouse_genomes_project 2 180453622 180509392 + MGP_AJ_P0059970 Prpf6 protein_coding protein_coding MGP_AJ_T0059971.1 MGP_AJ_G0026996.1 mouse_genomes_project 2 180453676 180495178 + Prpf6 protein_coding retained_intron MGP_AJ_T0054506.1 MGP_AJ_G0025651.1 mouse_genomes_project 2 33982641 33983580 + MGP_AJ_P0054506 Olfr50 protein_coding protein_coding MGP_AJ_T0054809.1 MGP_AJ_G0025713.1 mouse_genomes_project 2 50201722 50480471 + MGP_AJ_P0054809 Fmnl2 protein_coding protein_coding MGP_AJ_T0054810.1 MGP_AJ_G0025713.1 mouse_genomes_project 2 50201730 50480872 + MGP_AJ_P0054810 Fmnl2 protein_coding protein_coding MGP_AJ_T0054811.1 MGP_AJ_G0025713.1 mouse_genomes_project 2 50201730 50478549 + MGP_AJ_P0054811 Fmnl2 protein_coding protein_coding MGP_AJ_T0054812.1 MGP_AJ_G0025713.1 mouse_genomes_project 2 50460425 50480471 + MGP_AJ_P0054812 Fmnl2 protein_coding protein_coding MGP_AJ_T0054813.1 MGP_AJ_G0025713.1 mouse_genomes_project 2 50466237 50480471 + MGP_AJ_P0054813 Fmnl2 protein_coding protein_coding MGP_AJ_T0054814.1 MGP_AJ_G0025713.1 mouse_genomes_project 2 50472680 50478874 + MGP_AJ_P0054814 Fmnl2 protein_coding protein_coding MGP_AJ_T0053221.1 MGP_AJ_G0025433.1 mouse_genomes_project 2 22560660 22562455 - MGP_AJ_P0053221 Phpt1 protein_coding protein_coding MGP_AJ_T0053222.1 MGP_AJ_G0025433.1 mouse_genomes_project 2 22560732 22562109 - Phpt1 protein_coding processed_transcript MGP_AJ_T0011506.1 MGP_AJ_G0009628.1 mouse_genomes_project 2 102789485 102789745 - Gm27715 misc_RNA misc_RNA MGP_AJ_T0057477.1 MGP_AJ_G0026411.1 mouse_genomes_project 2 124987238 125015235 + Ap4e1 protein_coding retained_intron MGP_AJ_T0057478.1 MGP_AJ_G0026411.1 mouse_genomes_project 2 124987242 124992051 + Ap4e1 protein_coding retained_intron MGP_AJ_T0057479.1 MGP_AJ_G0026411.1 mouse_genomes_project 2 124987245 125023239 + MGP_AJ_P0057479 Ap4e1 protein_coding protein_coding MGP_AJ_T0057480.1 MGP_AJ_G0026411.1 mouse_genomes_project 2 124987251 125046422 + MGP_AJ_P0057480 Ap4e1 protein_coding protein_coding MGP_AJ_T0057481.1 MGP_AJ_G0026411.1 mouse_genomes_project 2 124987273 125006416 + MGP_AJ_P0057481 Ap4e1 protein_coding nonsense_mediated_decay MGP_AJ_T0057482.1 MGP_AJ_G0026411.1 mouse_genomes_project 2 124987275 125038830 + MGP_AJ_P0057482 Ap4e1 protein_coding nonsense_mediated_decay MGP_AJ_T0057483.1 MGP_AJ_G0026411.1 mouse_genomes_project 2 124987275 125025574 + MGP_AJ_P0057483 Ap4e1 protein_coding nonsense_mediated_decay MGP_AJ_T0057484.1 MGP_AJ_G0026411.1 mouse_genomes_project 2 125027752 125038659 + MGP_AJ_P0057484 Ap4e1 protein_coding nonsense_mediated_decay MGP_AJ_T0054702.1 MGP_AJ_G0025695.1 mouse_genomes_project 2 46136081 46226075 + MGP_AJ_P0054702 Acvr2a protein_coding protein_coding MGP_AJ_T0054703.1 MGP_AJ_G0025695.1 mouse_genomes_project 2 46213098 46223054 + Acvr2a protein_coding processed_transcript MGP_AJ_T0059050.1 MGP_AJ_G0026781.1 mouse_genomes_project 2 161522824 161550769 + MGP_AJ_P0059050 Sgk2 protein_coding protein_coding MGP_AJ_T0059051.1 MGP_AJ_G0026781.1 mouse_genomes_project 2 161522996 161550768 + MGP_AJ_P0059051 Sgk2 protein_coding protein_coding MGP_AJ_T0059052.1 MGP_AJ_G0026781.1 mouse_genomes_project 2 161533788 161542507 + Sgk2 protein_coding retained_intron MGP_AJ_T0013733.1 MGP_AJ_G0011828.1 mouse_genomes_project 2 116779808 116780077 + processed_pseudogene processed_pseudogene MGP_AJ_T0013811.1 MGP_AJ_G0011906.1 mouse_genomes_project 2 146195043 146195537 - processed_pseudogene processed_pseudogene MGP_AJ_T0011128.1 MGP_AJ_G0009250.1 mouse_genomes_project X 35004231 35004302 - Gm26194 miRNA miRNA MGP_AJ_T0016902.1 MGP_AJ_G0014997.1 mouse_genomes_project X 164235094 164235541 + processed_pseudogene processed_pseudogene MGP_AJ_T0096715.1 MGP_AJ_G0035826.1 mouse_genomes_project X 70353570 70355365 - MGP_AJ_P0096715 Slc10a3 protein_coding protein_coding MGP_AJ_T0096716.1 MGP_AJ_G0035826.1 mouse_genomes_project X 70353570 70359252 - MGP_AJ_P0096716 Slc10a3 protein_coding protein_coding MGP_AJ_T0096717.1 MGP_AJ_G0035826.1 mouse_genomes_project X 70353570 70359311 - MGP_AJ_P0096717 Slc10a3 protein_coding protein_coding MGP_AJ_T0096718.1 MGP_AJ_G0035826.1 mouse_genomes_project X 70353570 70359355 - MGP_AJ_P0096718 Slc10a3 protein_coding protein_coding MGP_AJ_T0100364.1 MGP_AJ_G0038330.1 mouse_genomes_project X 102422833 102422945 + Gm23656 snRNA snRNA MGP_AJ_T0016669.1 MGP_AJ_G0014764.1 mouse_genomes_project X 112096530 112099899 + processed_pseudogene processed_pseudogene MGP_AJ_T0016239.1 MGP_AJ_G0014334.1 mouse_genomes_project X 11224295 11224682 - processed_pseudogene processed_pseudogene MGP_AJ_T0095834.1 MGP_AJ_G0035569.1 mouse_genomes_project X 15590804 15593989 - MGP_AJ_P0095834 Ndufb11 protein_coding protein_coding MGP_AJ_T0097515.1 MGP_AJ_G0036062.1 mouse_genomes_project X 132203464 132208834 + MGP_AJ_P0097515 protein_coding protein_coding MGP_AJ_T0098022.1 MGP_AJ_G0036197.1 mouse_genomes_project X 156810537 157176032 + MGP_AJ_P0098022 Sh3kbp1 protein_coding protein_coding MGP_AJ_T0098023.1 MGP_AJ_G0036197.1 mouse_genomes_project X 156810806 157118784 + Sh3kbp1 protein_coding retained_intron MGP_AJ_T0098024.1 MGP_AJ_G0036197.1 mouse_genomes_project X 156810806 157171132 + MGP_AJ_P0098024 Sh3kbp1 protein_coding protein_coding MGP_AJ_T0098025.1 MGP_AJ_G0036197.1 mouse_genomes_project X 156894727 157063633 + MGP_AJ_P0098025 Sh3kbp1 protein_coding protein_coding MGP_AJ_T0098026.1 MGP_AJ_G0036197.1 mouse_genomes_project X 156906988 157172130 + MGP_AJ_P0098026 Sh3kbp1 protein_coding protein_coding MGP_AJ_T0098027.1 MGP_AJ_G0036197.1 mouse_genomes_project X 156906988 157171828 + MGP_AJ_P0098027 Sh3kbp1 protein_coding nonsense_mediated_decay MGP_AJ_T0098028.1 MGP_AJ_G0036197.1 mouse_genomes_project X 157037009 157173627 + MGP_AJ_P0098028 Sh3kbp1 protein_coding protein_coding MGP_AJ_T0098029.1 MGP_AJ_G0036197.1 mouse_genomes_project X 157037022 157172130 + MGP_AJ_P0098029 Sh3kbp1 protein_coding protein_coding MGP_AJ_T0098030.1 MGP_AJ_G0036197.1 mouse_genomes_project X 157037505 157173879 + Sh3kbp1 protein_coding processed_transcript MGP_AJ_T0098031.1 MGP_AJ_G0036197.1 mouse_genomes_project X 157117557 157171282 + MGP_AJ_P0098031 Sh3kbp1 protein_coding protein_coding MGP_AJ_T0098032.1 MGP_AJ_G0036197.1 mouse_genomes_project X 157139166 157169851 + Sh3kbp1 protein_coding processed_transcript MGP_AJ_T0098033.1 MGP_AJ_G0036197.1 mouse_genomes_project X 157140162 157173880 + Sh3kbp1 protein_coding processed_transcript MGP_AJ_T0098034.1 MGP_AJ_G0036197.1 mouse_genomes_project X 157140381 157172130 + Sh3kbp1 protein_coding processed_transcript MGP_AJ_T0098035.1 MGP_AJ_G0036197.1 mouse_genomes_project X 157140487 157171153 + Sh3kbp1 protein_coding processed_transcript MGP_AJ_T0095992.1 MGP_AJ_G0035633.1 mouse_genomes_project X 32724524 32729644 - MGP_AJ_P0095992 protein_coding protein_coding MGP_AJ_T0016252.1 MGP_AJ_G0014347.1 mouse_genomes_project X 14781914 14782247 - processed_pseudogene processed_pseudogene MGP_AJ_T0096307.1 MGP_AJ_G0035737.1 mouse_genomes_project X 55560566 55592367 + MGP_AJ_P0096307 F9 protein_coding protein_coding MGP_AJ_T0016774.1 MGP_AJ_G0014869.1 mouse_genomes_project X 138759146 138759417 - processed_pseudogene processed_pseudogene MGP_AJ_T0095811.1 MGP_AJ_G0035561.1 mouse_genomes_project X 13154479 13155324 + MGP_AJ_P0095811 Dusp21 protein_coding protein_coding MGP_AJ_T0096823.1 MGP_AJ_G0035853.1 mouse_genomes_project X 72410269 72414096 + MGP_AJ_P0096823 protein_coding protein_coding MGP_AJ_T0016696.1 MGP_AJ_G0014791.1 mouse_genomes_project X 118377047 118378166 + processed_pseudogene processed_pseudogene MGP_AJ_T0016222.1 MGP_AJ_G0014317.1 mouse_genomes_project X 6896911 6897141 + processed_pseudogene processed_pseudogene MGP_AJ_T0016436.1 MGP_AJ_G0014531.1 mouse_genomes_project X 71038375 71039391 + processed_pseudogene processed_pseudogene MGP_AJ_T0016555.1 MGP_AJ_G0014650.1 mouse_genomes_project X 93490931 93491323 - processed_pseudogene processed_pseudogene MGP_AJ_T0016486.1 MGP_AJ_G0014581.1 mouse_genomes_project X 81983848 81984321 - processed_pseudogene processed_pseudogene MGP_AJ_T0096092.1 MGP_AJ_G0035663.1 mouse_genomes_project X 39381605 39384490 - MGP_AJ_P0096092 Dcaf12l2 protein_coding protein_coding MGP_AJ_T0095800.1 MGP_AJ_G0035555.1 mouse_genomes_project X 11559878 11562555 + MGP_AJ_P0095800 protein_coding protein_coding MGP_AJ_T0097448.1 MGP_AJ_G0036044.1 mouse_genomes_project X 130722364 130737993 - MGP_AJ_P0097448 Xkrx protein_coding protein_coding MGP_AJ_T0097449.1 MGP_AJ_G0036044.1 mouse_genomes_project X 130725172 130738141 - Xkrx protein_coding processed_transcript MGP_AJ_T0016874.1 MGP_AJ_G0014969.1 mouse_genomes_project X 157500754 157501236 - processed_pseudogene processed_pseudogene MGP_AJ_T0016643.1 MGP_AJ_G0014738.1 mouse_genomes_project X 108440279 108440924 + processed_pseudogene processed_pseudogene MGP_AJ_T0096095.1 MGP_AJ_G0035665.1 mouse_genomes_project X 40084244 40086132 + MGP_AJ_P0096095 Prr32 protein_coding protein_coding MGP_AJ_T0016581.1 MGP_AJ_G0014676.1 mouse_genomes_project X 99216645 99218050 + processed_pseudogene processed_pseudogene MGP_AJ_T0097570.1 MGP_AJ_G0036081.1 mouse_genomes_project X 133468417 133470395 + MGP_AJ_P0097570 protein_coding protein_coding MGP_AJ_T0016583.1 MGP_AJ_G0014678.1 mouse_genomes_project X 99598948 99599693 + processed_pseudogene processed_pseudogene MGP_AJ_T0098153.1 MGP_AJ_G0036228.1 mouse_genomes_project X 161772185 161804378 + MGP_AJ_P0098153 Asb9 protein_coding protein_coding MGP_AJ_T0016749.1 MGP_AJ_G0014844.1 mouse_genomes_project X 133968680 133970599 + processed_pseudogene processed_pseudogene MGP_AJ_T0016677.1 MGP_AJ_G0014772.1 mouse_genomes_project X 114210517 114211506 - processed_pseudogene processed_pseudogene MGP_AJ_T0096394.1 MGP_AJ_G0035767.1 mouse_genomes_project X 67463280 67467030 + MGP_AJ_P0096394 Hmgb3 protein_coding unknown_likely_coding MGP_AJ_T0096395.1 MGP_AJ_G0035767.1 mouse_genomes_project X 67464171 67466499 + MGP_AJ_P0096395 Hmgb3 protein_coding protein_coding MGP_AJ_T0096396.1 MGP_AJ_G0035767.1 mouse_genomes_project X 67465008 67466498 + Hmgb3 protein_coding retained_intron MGP_AJ_T0016688.1 MGP_AJ_G0014783.1 mouse_genomes_project X 116590785 116591615 + processed_pseudogene processed_pseudogene MGP_AJ_T0096546.1 MGP_AJ_G0035807.1 mouse_genomes_project X 69892929 69895919 - Naa10 protein_coding processed_transcript MGP_AJ_T0096547.1 MGP_AJ_G0035807.1 mouse_genomes_project X 69892929 69899634 - MGP_AJ_P0096547 Naa10 protein_coding protein_coding MGP_AJ_T0096548.1 MGP_AJ_G0035807.1 mouse_genomes_project X 69892952 69899574 - MGP_AJ_P0096548 Naa10 protein_coding protein_coding MGP_AJ_T0096549.1 MGP_AJ_G0035807.1 mouse_genomes_project X 69892976 69899522 - MGP_AJ_P0096549 Naa10 protein_coding protein_coding MGP_AJ_T0096550.1 MGP_AJ_G0035807.1 mouse_genomes_project X 69893136 69899584 - MGP_AJ_P0096550 Naa10 protein_coding protein_coding MGP_AJ_T0096551.1 MGP_AJ_G0035807.1 mouse_genomes_project X 69893148 69895961 - Naa10 protein_coding processed_transcript MGP_AJ_T0096552.1 MGP_AJ_G0035807.1 mouse_genomes_project X 69893530 69899518 - MGP_AJ_P0096552 Naa10 protein_coding protein_coding MGP_AJ_T0096553.1 MGP_AJ_G0035807.1 mouse_genomes_project X 69893917 69896519 - Naa10 protein_coding retained_intron MGP_AJ_T0096554.1 MGP_AJ_G0035807.1 mouse_genomes_project X 69894125 69899596 - Naa10 protein_coding retained_intron MGP_AJ_T0096555.1 MGP_AJ_G0035807.1 mouse_genomes_project X 69898666 69899545 - Naa10 protein_coding retained_intron MGP_AJ_T0096556.1 MGP_AJ_G0035807.1 mouse_genomes_project X 69898802 69899542 - Naa10 protein_coding retained_intron MGP_AJ_T0096079.1 MGP_AJ_G0035659.1 mouse_genomes_project X 37520255 37522089 + MGP_AJ_P0096079 Gm43337 protein_coding protein_coding MGP_AJ_T0101656.1 MGP_AJ_G0039622.1 mouse_genomes_project X 153617635 153617732 - Gm23404 snoRNA snoRNA MGP_AJ_T0102974.1 MGP_AJ_G0040714.1 mouse_genomes_project X 151681537 151692224 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0096178.1 MGP_AJ_G0035690.1 mouse_genomes_project X 45433363 45434362 - MGP_AJ_P0096178 Olfr1324 protein_coding protein_coding MGP_AJ_T0011155.1 MGP_AJ_G0009277.1 mouse_genomes_project X 62530354 62530419 - Mir742 miRNA miRNA MGP_AJ_T0016658.1 MGP_AJ_G0014753.1 mouse_genomes_project X 110625284 110626852 + processed_pseudogene processed_pseudogene MGP_AJ_T0095918.1 MGP_AJ_G0035594.1 mouse_genomes_project X 31193589 31196873 + MGP_AJ_P0095918 Zcchc12 protein_coding protein_coding MGP_AJ_T0095919.1 MGP_AJ_G0035594.1 mouse_genomes_project X 31193631 31196881 + MGP_AJ_P0095919 Zcchc12 protein_coding protein_coding MGP_AJ_T0095920.1 MGP_AJ_G0035594.1 mouse_genomes_project X 31193644 31196880 + MGP_AJ_P0095920 Zcchc12 protein_coding protein_coding MGP_AJ_T0095921.1 MGP_AJ_G0035594.1 mouse_genomes_project X 31193671 31196880 + MGP_AJ_P0095921 Zcchc12 protein_coding protein_coding MGP_AJ_T0097108.1 MGP_AJ_G0035939.1 mouse_genomes_project X 97766540 97769140 - Gm614 protein_coding processed_transcript MGP_AJ_T0097109.1 MGP_AJ_G0035939.1 mouse_genomes_project X 97766540 97769157 - MGP_AJ_P0097109 Gm614 protein_coding protein_coding MGP_AJ_T0016628.1 MGP_AJ_G0014723.1 mouse_genomes_project X 103897136 103897607 + processed_pseudogene processed_pseudogene MGP_AJ_T0096523.1 MGP_AJ_G0035806.1 mouse_genomes_project X 69868451 69870778 + MGP_AJ_P0096523 Avpr2 protein_coding protein_coding MGP_AJ_T0096524.1 MGP_AJ_G0035806.1 mouse_genomes_project X 69868452 69869771 + Avpr2 protein_coding processed_transcript MGP_AJ_T0096525.1 MGP_AJ_G0035806.1 mouse_genomes_project X 69868459 69871852 + MGP_AJ_P0096525 Avpr2 protein_coding protein_coding MGP_AJ_T0096526.1 MGP_AJ_G0035806.1 mouse_genomes_project X 69868463 69870547 + MGP_AJ_P0096526 Avpr2 protein_coding protein_coding MGP_AJ_T0016338.1 MGP_AJ_G0014433.1 mouse_genomes_project X 47859278 47859601 - processed_pseudogene processed_pseudogene MGP_AJ_T0096438.1 MGP_AJ_G0035785.1 mouse_genomes_project X 69242605 69246768 + MGP_AJ_P0096438 protein_coding protein_coding MGP_AJ_T0005563.1 MGP_AJ_G0004692.1 mouse_genomes_project X 2145079 2153678 + Ppp1r3fos antisense antisense MGP_AJ_T0005564.1 MGP_AJ_G0004692.1 mouse_genomes_project X 2147144 2151079 + Ppp1r3fos antisense antisense MGP_AJ_T0101625.1 MGP_AJ_G0039591.1 mouse_genomes_project X 78507720 78507857 - Gm24706 snoRNA snoRNA MGP_AJ_T0097613.1 MGP_AJ_G0036096.1 mouse_genomes_project X 135774039 135870351 + MGP_AJ_P0097613 Nrk protein_coding protein_coding MGP_AJ_T0097614.1 MGP_AJ_G0036096.1 mouse_genomes_project X 135774040 135827544 + Nrk protein_coding processed_transcript MGP_AJ_T0097615.1 MGP_AJ_G0036096.1 mouse_genomes_project X 135774040 135871791 + MGP_AJ_P0097615 Nrk protein_coding protein_coding MGP_AJ_T0097616.1 MGP_AJ_G0036096.1 mouse_genomes_project X 135774040 135871063 + MGP_AJ_P0097616 Nrk protein_coding nonsense_mediated_decay MGP_AJ_T0097617.1 MGP_AJ_G0036096.1 mouse_genomes_project X 135843979 135851040 + Nrk protein_coding retained_intron MGP_AJ_T0016864.1 MGP_AJ_G0014959.1 mouse_genomes_project X 155715364 155715949 - processed_pseudogene processed_pseudogene MGP_AJ_T0097971.1 MGP_AJ_G0036185.1 mouse_genomes_project X 152803322 153007333 + Gm15155 protein_coding processed_transcript MGP_AJ_T0097972.1 MGP_AJ_G0036185.1 mouse_genomes_project X 152803356 153512201 + MGP_AJ_P0097972 Gm15155 protein_coding protein_coding MGP_AJ_T0016357.1 MGP_AJ_G0014452.1 mouse_genomes_project X 54251260 54251722 - processed_pseudogene processed_pseudogene MGP_AJ_T0097917.1 MGP_AJ_G0036162.1 mouse_genomes_project X 149295985 149321076 - MGP_AJ_P0097917 Gpr173 protein_coding protein_coding MGP_AJ_T0097918.1 MGP_AJ_G0036162.1 mouse_genomes_project X 149319387 149321076 - Gpr173 protein_coding processed_transcript MGP_AJ_T0097270.1 MGP_AJ_G0035981.1 mouse_genomes_project X 102579793 102681529 + MGP_AJ_P0097270 Atp7a protein_coding protein_coding MGP_AJ_T0097271.1 MGP_AJ_G0035981.1 mouse_genomes_project X 102579839 102681535 + MGP_AJ_P0097271 Atp7a protein_coding protein_coding MGP_AJ_T0097272.1 MGP_AJ_G0035981.1 mouse_genomes_project X 102663534 102674432 + Atp7a protein_coding processed_transcript MGP_AJ_T0097273.1 MGP_AJ_G0035981.1 mouse_genomes_project X 102671360 102679028 + Atp7a protein_coding retained_intron MGP_AJ_T0097356.1 MGP_AJ_G0036010.1 mouse_genomes_project X 108847587 108852382 + MGP_AJ_P0097356 4933403O08Rik protein_coding protein_coding MGP_AJ_T0097357.1 MGP_AJ_G0036010.1 mouse_genomes_project X 108849002 108852382 + MGP_AJ_P0097357 4933403O08Rik protein_coding protein_coding MGP_AJ_T0097358.1 MGP_AJ_G0036010.1 mouse_genomes_project X 108849111 108852309 + MGP_AJ_P0097358 4933403O08Rik protein_coding protein_coding MGP_AJ_T0101623.1 MGP_AJ_G0039589.1 mouse_genomes_project X 72956892 72957031 + Gm23280 snoRNA snoRNA MGP_AJ_T0095636.1 MGP_AJ_G0035507.1 mouse_genomes_project X 2478465 2483266 - MGP_AJ_P0095636 Pqbp1 protein_coding protein_coding MGP_AJ_T0095637.1 MGP_AJ_G0035507.1 mouse_genomes_project X 2478529 2482976 - MGP_AJ_P0095637 Pqbp1 protein_coding protein_coding MGP_AJ_T0095638.1 MGP_AJ_G0035507.1 mouse_genomes_project X 2478657 2483196 - MGP_AJ_P0095638 Pqbp1 protein_coding protein_coding MGP_AJ_T0095639.1 MGP_AJ_G0035507.1 mouse_genomes_project X 2478740 2482997 - MGP_AJ_P0095639 Pqbp1 protein_coding protein_coding MGP_AJ_T0095640.1 MGP_AJ_G0035507.1 mouse_genomes_project X 2479871 2482893 - MGP_AJ_P0095640 Pqbp1 protein_coding protein_coding MGP_AJ_T0098780.1 MGP_AJ_G0036764.1 mouse_genomes_project X 154850128 154850222 - Gm23381 rRNA rRNA MGP_AJ_T0096490.1 MGP_AJ_G0035801.1 mouse_genomes_project X 69751223 69759158 - Idh3g protein_coding retained_intron MGP_AJ_T0096491.1 MGP_AJ_G0035801.1 mouse_genomes_project X 69751223 69759158 - MGP_AJ_P0096491 Idh3g protein_coding protein_coding MGP_AJ_T0096492.1 MGP_AJ_G0035801.1 mouse_genomes_project X 69751303 69753158 - Idh3g protein_coding retained_intron MGP_AJ_T0096493.1 MGP_AJ_G0035801.1 mouse_genomes_project X 69751930 69752957 - Idh3g protein_coding retained_intron MGP_AJ_T0096494.1 MGP_AJ_G0035801.1 mouse_genomes_project X 69752296 69753073 - Idh3g protein_coding retained_intron MGP_AJ_T0096495.1 MGP_AJ_G0035801.1 mouse_genomes_project X 69752334 69758883 - Idh3g protein_coding processed_transcript MGP_AJ_T0096496.1 MGP_AJ_G0035801.1 mouse_genomes_project X 69752681 69753968 - Idh3g protein_coding retained_intron MGP_AJ_T0096497.1 MGP_AJ_G0035801.1 mouse_genomes_project X 69752848 69754480 - Idh3g protein_coding retained_intron MGP_AJ_T0096498.1 MGP_AJ_G0035801.1 mouse_genomes_project X 69753239 69754629 - Idh3g protein_coding processed_transcript MGP_AJ_T0097220.1 MGP_AJ_G0035969.1 mouse_genomes_project X 100544387 100571023 - MGP_AJ_P0097220 Rlim protein_coding protein_coding MGP_AJ_T0097221.1 MGP_AJ_G0035969.1 mouse_genomes_project X 100544387 100571023 - MGP_AJ_P0097221 Rlim protein_coding protein_coding MGP_AJ_T0097222.1 MGP_AJ_G0035969.1 mouse_genomes_project X 100564873 100571023 - Rlim protein_coding retained_intron MGP_AJ_T0016349.1 MGP_AJ_G0014444.1 mouse_genomes_project X 53159444 53159690 - processed_pseudogene processed_pseudogene MGP_AJ_T0096359.1 MGP_AJ_G0035761.1 mouse_genomes_project X 66158920 66159748 - MGP_AJ_P0096359 4930567H17Rik protein_coding protein_coding MGP_AJ_T0098775.1 MGP_AJ_G0036759.1 mouse_genomes_project X 133050379 133050498 + n-R5s12 rRNA rRNA MGP_AJ_T0016564.1 MGP_AJ_G0014659.1 mouse_genomes_project X 96180879 96181173 - processed_pseudogene processed_pseudogene MGP_AJ_T0016871.1 MGP_AJ_G0014966.1 mouse_genomes_project X 157218157 157218591 - processed_pseudogene processed_pseudogene MGP_AJ_T0016816.1 MGP_AJ_G0014911.1 mouse_genomes_project X 147392598 147395029 + processed_pseudogene processed_pseudogene MGP_AJ_T0011218.1 MGP_AJ_G0009340.1 mouse_genomes_project X 143989639 143989777 + Gm24627 miRNA miRNA MGP_AJ_T0097715.1 MGP_AJ_G0036131.1 mouse_genomes_project X 140175154 140283515 - MGP_AJ_P0097715 Chrdl1 protein_coding protein_coding MGP_AJ_T0097716.1 MGP_AJ_G0036131.1 mouse_genomes_project X 140175164 140287768 - MGP_AJ_P0097716 Chrdl1 protein_coding protein_coding MGP_AJ_T0097717.1 MGP_AJ_G0036131.1 mouse_genomes_project X 140186645 140287690 - MGP_AJ_P0097717 Chrdl1 protein_coding protein_coding MGP_AJ_T0097718.1 MGP_AJ_G0036131.1 mouse_genomes_project X 140186647 140287402 - MGP_AJ_P0097718 Chrdl1 protein_coding protein_coding MGP_AJ_T0016366.1 MGP_AJ_G0014461.1 mouse_genomes_project X 56290964 56292024 - processed_pseudogene processed_pseudogene MGP_AJ_T0016644.1 MGP_AJ_G0014739.1 mouse_genomes_project X 108470281 108470830 + processed_pseudogene processed_pseudogene MGP_AJ_T0016826.1 MGP_AJ_G0014921.1 mouse_genomes_project X 148705046 148705762 - processed_pseudogene processed_pseudogene MGP_AJ_T0011220.1 MGP_AJ_G0009342.1 mouse_genomes_project X 147480719 147480780 - Mir3620 miRNA miRNA MGP_AJ_T0016890.1 MGP_AJ_G0014985.1 mouse_genomes_project X 160561788 160562258 - processed_pseudogene processed_pseudogene MGP_AJ_T0016432.1 MGP_AJ_G0014527.1 mouse_genomes_project X 70514198 70514669 + processed_pseudogene processed_pseudogene MGP_AJ_T0101636.1 MGP_AJ_G0039602.1 mouse_genomes_project X 118187225 118187361 + Gm23277 snoRNA snoRNA MGP_AJ_T0016723.1 MGP_AJ_G0014818.1 mouse_genomes_project X 129664809 129666432 - processed_pseudogene processed_pseudogene MGP_AJ_T0096758.1 MGP_AJ_G0035837.1 mouse_genomes_project X 70933016 70947428 + MGP_AJ_P0096758 protein_coding protein_coding MGP_AJ_T0096601.1 MGP_AJ_G0035812.1 mouse_genomes_project X 70107835 70134175 + MGP_AJ_P0096601 Opn1mw protein_coding protein_coding MGP_AJ_T0096602.1 MGP_AJ_G0035812.1 mouse_genomes_project X 70107837 70134166 + MGP_AJ_P0096602 Opn1mw protein_coding protein_coding MGP_AJ_T0096603.1 MGP_AJ_G0035812.1 mouse_genomes_project X 70107852 70127050 + Opn1mw protein_coding processed_transcript MGP_AJ_T0096604.1 MGP_AJ_G0035812.1 mouse_genomes_project X 70121399 70134171 + Opn1mw protein_coding processed_transcript MGP_AJ_T0096605.1 MGP_AJ_G0035812.1 mouse_genomes_project X 70121420 70123363 + Opn1mw protein_coding processed_transcript MGP_AJ_T0096606.1 MGP_AJ_G0035812.1 mouse_genomes_project X 70121917 70134171 + MGP_AJ_P0096606 Opn1mw protein_coding protein_coding MGP_AJ_T0096031.1 MGP_AJ_G0035652.1 mouse_genomes_project X 33622522 33639243 + Mcts1 protein_coding processed_transcript MGP_AJ_T0096032.1 MGP_AJ_G0035652.1 mouse_genomes_project X 33622599 33640840 + MGP_AJ_P0096032 Mcts1 protein_coding protein_coding MGP_AJ_T0096033.1 MGP_AJ_G0035652.1 mouse_genomes_project X 33623243 33629391 + Mcts1 protein_coding processed_transcript MGP_AJ_T0096034.1 MGP_AJ_G0035652.1 mouse_genomes_project X 33636132 33640840 + Mcts1 protein_coding processed_transcript MGP_AJ_T0096035.1 MGP_AJ_G0035652.1 mouse_genomes_project X 33637212 33640814 + Mcts1 protein_coding processed_transcript MGP_AJ_T0096096.1 MGP_AJ_G0035666.1 mouse_genomes_project X 41312102 41313441 + MGP_AJ_P0096096 Actrt1 protein_coding protein_coding MGP_AJ_T0016618.1 MGP_AJ_G0014713.1 mouse_genomes_project X 102735888 102736501 + processed_pseudogene processed_pseudogene MGP_AJ_T0005592.1 MGP_AJ_G0004713.1 mouse_genomes_project X 72386466 72387046 - Gm14707 antisense antisense MGP_AJ_T0101913.1 MGP_AJ_G0039776.1 mouse_genomes_project X 149468682 149470882 - transcribed_processed_pseudogene processed_transcript MGP_AJ_T0101914.1 MGP_AJ_G0039776.1 mouse_genomes_project X 149469455 149470597 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0016305.1 MGP_AJ_G0014400.1 mouse_genomes_project X 38624357 38624640 - processed_pseudogene processed_pseudogene MGP_AJ_T0095996.1 MGP_AJ_G0035637.1 mouse_genomes_project X 32790029 32794824 + MGP_AJ_P0095996 Rhox5 protein_coding protein_coding MGP_AJ_T0095997.1 MGP_AJ_G0035637.1 mouse_genomes_project X 32790038 32794712 + MGP_AJ_P0095997 Rhox5 protein_coding protein_coding MGP_AJ_T0097450.1 MGP_AJ_G0036045.1 mouse_genomes_project X 130769464 130793213 + MGP_AJ_P0097450 Arl13a protein_coding protein_coding MGP_AJ_T0016634.1 MGP_AJ_G0014729.1 mouse_genomes_project X 105708952 105709764 + processed_pseudogene processed_pseudogene MGP_AJ_T0096147.1 MGP_AJ_G0035679.1 mouse_genomes_project X 43656118 43663745 + Slc25a14 protein_coding processed_transcript MGP_AJ_T0096148.1 MGP_AJ_G0035679.1 mouse_genomes_project X 43656283 43695010 + MGP_AJ_P0096148 Slc25a14 protein_coding protein_coding MGP_AJ_T0096149.1 MGP_AJ_G0035679.1 mouse_genomes_project X 43656283 43695010 + MGP_AJ_P0096149 Slc25a14 protein_coding nonsense_mediated_decay MGP_AJ_T0096150.1 MGP_AJ_G0035679.1 mouse_genomes_project X 43656283 43695010 + MGP_AJ_P0096150 Slc25a14 protein_coding protein_coding MGP_AJ_T0096151.1 MGP_AJ_G0035679.1 mouse_genomes_project X 43656454 43684754 + Slc25a14 protein_coding processed_transcript MGP_AJ_T0096152.1 MGP_AJ_G0035679.1 mouse_genomes_project X 43656470 43695010 + MGP_AJ_P0096152 Slc25a14 protein_coding protein_coding MGP_AJ_T0096153.1 MGP_AJ_G0035679.1 mouse_genomes_project X 43656525 43667984 + Slc25a14 protein_coding retained_intron MGP_AJ_T0096154.1 MGP_AJ_G0035679.1 mouse_genomes_project X 43656667 43695008 + MGP_AJ_P0096154 Slc25a14 protein_coding protein_coding MGP_AJ_T0098859.1 MGP_AJ_G0036843.1 mouse_genomes_project X 117797731 117797852 - Gm25825 scaRNA scaRNA MGP_AJ_T0096826.1 MGP_AJ_G0035855.1 mouse_genomes_project X 72719455 72739596 - MGP_AJ_P0096826 Cldn34d protein_coding protein_coding MGP_AJ_T0101903.1 MGP_AJ_G0039768.1 mouse_genomes_project X 100109129 100109722 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0101904.1 MGP_AJ_G0039768.1 mouse_genomes_project X 100109138 100110144 - transcribed_processed_pseudogene processed_transcript MGP_AJ_T0097587.1 MGP_AJ_G0036087.1 mouse_genomes_project X 133668178 133679390 - MGP_AJ_P0097587 Rab9b protein_coding protein_coding MGP_AJ_T0096440.1 MGP_AJ_G0035787.1 mouse_genomes_project X 69242791 69246770 + MGP_AJ_P0096440 protein_coding protein_coding MGP_AJ_T0016478.1 MGP_AJ_G0014573.1 mouse_genomes_project X 80186633 80187065 + processed_pseudogene processed_pseudogene MGP_AJ_T0011198.1 MGP_AJ_G0009320.1 mouse_genomes_project X 101958540 101958638 - Mir325 miRNA miRNA MGP_AJ_T0096804.1 MGP_AJ_G0035847.1 mouse_genomes_project X 71481508 71522309 + MGP_AJ_P0096804 Brcc3 protein_coding protein_coding MGP_AJ_T0096805.1 MGP_AJ_G0035847.1 mouse_genomes_project X 71481577 71520326 + MGP_AJ_P0096805 Brcc3 protein_coding protein_coding MGP_AJ_T0096806.1 MGP_AJ_G0035847.1 mouse_genomes_project X 71481580 71519073 + Brcc3 protein_coding retained_intron MGP_AJ_T0096807.1 MGP_AJ_G0035847.1 mouse_genomes_project X 71481590 71520049 + MGP_AJ_P0096807 Brcc3 protein_coding protein_coding MGP_AJ_T0096808.1 MGP_AJ_G0035847.1 mouse_genomes_project X 71481596 71504966 + MGP_AJ_P0096808 Brcc3 protein_coding protein_coding MGP_AJ_T0096809.1 MGP_AJ_G0035847.1 mouse_genomes_project X 71482187 71502450 + MGP_AJ_P0096809 Brcc3 protein_coding protein_coding MGP_AJ_T0096810.1 MGP_AJ_G0035847.1 mouse_genomes_project X 71500952 71519565 + Brcc3 protein_coding retained_intron MGP_AJ_T0098782.1 MGP_AJ_G0036766.1 mouse_genomes_project X 159469089 159469217 + Gm27490 rRNA rRNA MGP_AJ_T0005579.1 MGP_AJ_G0004702.1 mouse_genomes_project X 47644000 47687130 + A630012P03Rik antisense antisense MGP_AJ_T0005580.1 MGP_AJ_G0004702.1 mouse_genomes_project X 47644000 47687130 + A630012P03Rik antisense antisense MGP_AJ_T0096607.1 MGP_AJ_G0035813.1 mouse_genomes_project X 70134359 70149616 - MGP_AJ_P0096607 Tex28 protein_coding protein_coding MGP_AJ_T0096608.1 MGP_AJ_G0035813.1 mouse_genomes_project X 70134359 70149616 - MGP_AJ_P0096608 Tex28 protein_coding protein_coding MGP_AJ_T0011138.1 MGP_AJ_G0009260.1 mouse_genomes_project X 47818594 47818674 - Mir20b miRNA miRNA MGP_AJ_T0011758.1 MGP_AJ_G0009880.1 mouse_genomes_project X 64393605 64393661 + Gm27979 misc_RNA misc_RNA MGP_AJ_T0011150.1 MGP_AJ_G0009272.1 mouse_genomes_project X 55259323 55259420 - Gm44500 miRNA miRNA MGP_AJ_T0016645.1 MGP_AJ_G0014740.1 mouse_genomes_project X 108638850 108639581 + processed_pseudogene processed_pseudogene MGP_AJ_T0005602.1 MGP_AJ_G0004720.1 mouse_genomes_project X 99961447 99962660 - Gm26952 antisense antisense MGP_AJ_T0016244.1 MGP_AJ_G0014339.1 mouse_genomes_project X 12646512 12648367 - processed_pseudogene processed_pseudogene MGP_AJ_T0016778.1 MGP_AJ_G0014873.1 mouse_genomes_project X 138927984 138928242 - processed_pseudogene processed_pseudogene MGP_AJ_T0098010.1 MGP_AJ_G0036194.1 mouse_genomes_project X 156553841 156558179 + Eif1ax protein_coding retained_intron MGP_AJ_T0098011.1 MGP_AJ_G0036194.1 mouse_genomes_project X 156553841 156571904 + MGP_AJ_P0098011 Eif1ax protein_coding protein_coding MGP_AJ_T0011775.1 MGP_AJ_G0009897.1 mouse_genomes_project X 133505027 133505320 + Gm23068 misc_RNA misc_RNA MGP_AJ_T0096925.1 MGP_AJ_G0035893.1 mouse_genomes_project X 90557720 90607975 - MGP_AJ_P0096925 Zfx protein_coding protein_coding MGP_AJ_T0096926.1 MGP_AJ_G0035893.1 mouse_genomes_project X 90557721 90607468 - MGP_AJ_P0096926 Zfx protein_coding protein_coding MGP_AJ_T0096927.1 MGP_AJ_G0035893.1 mouse_genomes_project X 90557721 90607975 - MGP_AJ_P0096927 Zfx protein_coding protein_coding MGP_AJ_T0096928.1 MGP_AJ_G0035893.1 mouse_genomes_project X 90565477 90607943 - MGP_AJ_P0096928 Zfx protein_coding protein_coding MGP_AJ_T0096929.1 MGP_AJ_G0035893.1 mouse_genomes_project X 90581304 90607677 - MGP_AJ_P0096929 Zfx protein_coding protein_coding MGP_AJ_T0096930.1 MGP_AJ_G0035893.1 mouse_genomes_project X 90581802 90608250 - Zfx protein_coding processed_transcript MGP_AJ_T0096931.1 MGP_AJ_G0035893.1 mouse_genomes_project X 90598054 90607700 - Zfx protein_coding retained_intron MGP_AJ_T0098204.1 MGP_AJ_G0036242.1 mouse_genomes_project X 164780057 165448408 - MGP_AJ_P0098204 Frmpd4 protein_coding protein_coding MGP_AJ_T0098205.1 MGP_AJ_G0036242.1 mouse_genomes_project X 164780057 165914740 - MGP_AJ_P0098205 Frmpd4 protein_coding protein_coding MGP_AJ_T0098206.1 MGP_AJ_G0036242.1 mouse_genomes_project X 164780061 165220555 - MGP_AJ_P0098206 Frmpd4 protein_coding protein_coding MGP_AJ_T0098207.1 MGP_AJ_G0036242.1 mouse_genomes_project X 164784426 165051997 - MGP_AJ_P0098207 Frmpd4 protein_coding protein_coding MGP_AJ_T0097694.1 MGP_AJ_G0036120.1 mouse_genomes_project X 138342784 138571054 + MGP_AJ_P0097694 Col4a5 protein_coding protein_coding MGP_AJ_T0097695.1 MGP_AJ_G0036120.1 mouse_genomes_project X 138342809 138571000 + MGP_AJ_P0097695 Col4a5 protein_coding protein_coding MGP_AJ_T0097696.1 MGP_AJ_G0036120.1 mouse_genomes_project X 138509573 138571054 + MGP_AJ_P0097696 Col4a5 protein_coding protein_coding MGP_AJ_T0097697.1 MGP_AJ_G0036120.1 mouse_genomes_project X 138538106 138556961 + Col4a5 protein_coding processed_transcript MGP_AJ_T0096673.1 MGP_AJ_G0035820.1 mouse_genomes_project X 70281174 70288883 + MGP_AJ_P0096673 Atp6ap1 protein_coding protein_coding MGP_AJ_T0096674.1 MGP_AJ_G0035820.1 mouse_genomes_project X 70281220 70286536 + MGP_AJ_P0096674 Atp6ap1 protein_coding protein_coding MGP_AJ_T0096675.1 MGP_AJ_G0035820.1 mouse_genomes_project X 70281239 70287592 + MGP_AJ_P0096675 Atp6ap1 protein_coding protein_coding MGP_AJ_T0096676.1 MGP_AJ_G0035820.1 mouse_genomes_project X 70281240 70288851 + MGP_AJ_P0096676 Atp6ap1 protein_coding protein_coding MGP_AJ_T0096677.1 MGP_AJ_G0035820.1 mouse_genomes_project X 70281254 70285520 + Atp6ap1 protein_coding retained_intron MGP_AJ_T0096678.1 MGP_AJ_G0035820.1 mouse_genomes_project X 70281310 70287625 + MGP_AJ_P0096678 Atp6ap1 protein_coding nonsense_mediated_decay MGP_AJ_T0096679.1 MGP_AJ_G0035820.1 mouse_genomes_project X 70281339 70286676 + MGP_AJ_P0096679 Atp6ap1 protein_coding nonsense_mediated_decay MGP_AJ_T0096680.1 MGP_AJ_G0035820.1 mouse_genomes_project X 70286085 70287395 + Atp6ap1 protein_coding processed_transcript MGP_AJ_T0096681.1 MGP_AJ_G0035820.1 mouse_genomes_project X 70286714 70288175 + Atp6ap1 protein_coding retained_intron MGP_AJ_T0096682.1 MGP_AJ_G0035820.1 mouse_genomes_project X 70287650 70288177 + MGP_AJ_P0096682 Atp6ap1 protein_coding protein_coding MGP_AJ_T0016549.1 MGP_AJ_G0014644.1 mouse_genomes_project X 92738818 92739256 + processed_pseudogene processed_pseudogene MGP_AJ_T0016544.1 MGP_AJ_G0014639.1 mouse_genomes_project X 91543509 91544754 - processed_pseudogene processed_pseudogene MGP_AJ_T0016348.1 MGP_AJ_G0014443.1 mouse_genomes_project X 51929009 51929479 - processed_pseudogene processed_pseudogene MGP_AJ_T0102943.1 MGP_AJ_G0040683.1 mouse_genomes_project X 66158920 66159748 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0097338.1 MGP_AJ_G0036005.1 mouse_genomes_project X 107861604 107880276 + MGP_AJ_P0097338 protein_coding protein_coding MGP_AJ_T0097757.1 MGP_AJ_G0036139.1 mouse_genomes_project X 142332602 142392397 - MGP_AJ_P0097757 Amot protein_coding protein_coding MGP_AJ_T0097758.1 MGP_AJ_G0036139.1 mouse_genomes_project X 142338048 142374577 - MGP_AJ_P0097758 Amot protein_coding protein_coding MGP_AJ_T0097759.1 MGP_AJ_G0036139.1 mouse_genomes_project X 142345928 142348093 - Amot protein_coding retained_intron MGP_AJ_T0097760.1 MGP_AJ_G0036139.1 mouse_genomes_project X 142362608 142392664 - MGP_AJ_P0097760 Amot protein_coding protein_coding MGP_AJ_T0016371.1 MGP_AJ_G0014466.1 mouse_genomes_project X 56987012 56987569 + processed_pseudogene processed_pseudogene MGP_AJ_T0102946.1 MGP_AJ_G0040686.1 mouse_genomes_project X 70933047 70946806 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0016425.1 MGP_AJ_G0014520.1 mouse_genomes_project X 69356143 69358275 - processed_pseudogene processed_pseudogene MGP_AJ_T0016309.1 MGP_AJ_G0014404.1 mouse_genomes_project X 39477361 39477756 - processed_pseudogene processed_pseudogene MGP_AJ_T0016714.1 MGP_AJ_G0014809.1 mouse_genomes_project X 127068106 127068548 - processed_pseudogene processed_pseudogene MGP_AJ_T0016267.1 MGP_AJ_G0014362.1 mouse_genomes_project X 17272767 17273242 - processed_pseudogene processed_pseudogene MGP_AJ_T0005599.1 MGP_AJ_G0004719.1 mouse_genomes_project X 98315729 98317741 + antisense antisense MGP_AJ_T0005600.1 MGP_AJ_G0004719.1 mouse_genomes_project X 98315774 98318931 + antisense antisense MGP_AJ_T0005601.1 MGP_AJ_G0004719.1 mouse_genomes_project X 98316693 98318618 + antisense antisense MGP_AJ_T0016374.1 MGP_AJ_G0014469.1 mouse_genomes_project X 57237464 57238042 + processed_pseudogene processed_pseudogene MGP_AJ_T0016888.1 MGP_AJ_G0014983.1 mouse_genomes_project X 160442161 160442640 - processed_pseudogene processed_pseudogene MGP_AJ_T0016599.1 MGP_AJ_G0014694.1 mouse_genomes_project X 100097989 100098418 + processed_pseudogene processed_pseudogene MGP_AJ_T0097545.1 MGP_AJ_G0036070.1 mouse_genomes_project X 132635471 132640699 + MGP_AJ_P0097545 Bhlhb9 protein_coding protein_coding MGP_AJ_T0097546.1 MGP_AJ_G0036070.1 mouse_genomes_project X 132635473 132638947 + MGP_AJ_P0097546 Bhlhb9 protein_coding protein_coding MGP_AJ_T0097547.1 MGP_AJ_G0036070.1 mouse_genomes_project X 132635473 132640702 + MGP_AJ_P0097547 Bhlhb9 protein_coding protein_coding MGP_AJ_T0097548.1 MGP_AJ_G0036070.1 mouse_genomes_project X 132635603 132637091 + Bhlhb9 protein_coding retained_intron MGP_AJ_T0096428.1 MGP_AJ_G0035780.1 mouse_genomes_project X 68815448 68848149 + MGP_AJ_P0096428 Nsdhl protein_coding protein_coding MGP_AJ_T0096429.1 MGP_AJ_G0035780.1 mouse_genomes_project X 68827109 68843287 + Nsdhl protein_coding retained_intron MGP_AJ_T0016650.1 MGP_AJ_G0014745.1 mouse_genomes_project X 109351410 109351573 - processed_pseudogene processed_pseudogene MGP_AJ_T0095985.1 MGP_AJ_G0035630.1 mouse_genomes_project X 32705892 32710058 - MGP_AJ_P0095985 Rhox2g protein_coding protein_coding MGP_AJ_T0096632.1 MGP_AJ_G0035817.1 mouse_genomes_project X 70253080 70255441 + MGP_AJ_P0096632 protein_coding protein_coding MGP_AJ_T0096633.1 MGP_AJ_G0035817.1 mouse_genomes_project X 70253125 70255442 + MGP_AJ_P0096633 protein_coding protein_coding MGP_AJ_T0096634.1 MGP_AJ_G0035817.1 mouse_genomes_project X 70253126 70255069 + protein_coding processed_transcript MGP_AJ_T0096635.1 MGP_AJ_G0035817.1 mouse_genomes_project X 70253128 70255441 + MGP_AJ_P0096635 protein_coding protein_coding MGP_AJ_T0096636.1 MGP_AJ_G0035817.1 mouse_genomes_project X 70253224 70254529 + protein_coding retained_intron MGP_AJ_T0096637.1 MGP_AJ_G0035817.1 mouse_genomes_project X 70253247 70255391 + MGP_AJ_P0096637 protein_coding protein_coding MGP_AJ_T0096638.1 MGP_AJ_G0035817.1 mouse_genomes_project X 70253254 70255231 + protein_coding retained_intron MGP_AJ_T0096639.1 MGP_AJ_G0035817.1 mouse_genomes_project X 70253677 70255350 + protein_coding retained_intron MGP_AJ_T0096640.1 MGP_AJ_G0035817.1 mouse_genomes_project X 70253710 70254549 + protein_coding retained_intron MGP_AJ_T0096641.1 MGP_AJ_G0035817.1 mouse_genomes_project X 70254011 70254719 + protein_coding retained_intron MGP_AJ_T0096642.1 MGP_AJ_G0035817.1 mouse_genomes_project X 70254105 70255112 + protein_coding retained_intron MGP_AJ_T0016514.1 MGP_AJ_G0014609.1 mouse_genomes_project X 87699221 87699596 + processed_pseudogene processed_pseudogene MGP_AJ_T0096430.1 MGP_AJ_G0035781.1 mouse_genomes_project X 68877719 68922611 + MGP_AJ_P0096430 Zfp185 protein_coding protein_coding MGP_AJ_T0096431.1 MGP_AJ_G0035781.1 mouse_genomes_project X 68877740 68922611 + MGP_AJ_P0096431 Zfp185 protein_coding protein_coding MGP_AJ_T0096432.1 MGP_AJ_G0035781.1 mouse_genomes_project X 68878633 68887950 + MGP_AJ_P0096432 Zfp185 protein_coding protein_coding MGP_AJ_T0011210.1 MGP_AJ_G0009332.1 mouse_genomes_project X 139870746 139870841 - Gm44351 miRNA miRNA MGP_AJ_T0011770.1 MGP_AJ_G0009892.1 mouse_genomes_project X 105820033 105820325 - Gm26415 misc_RNA misc_RNA MGP_AJ_T0016397.1 MGP_AJ_G0014492.1 mouse_genomes_project X 62907772 62908390 - processed_pseudogene processed_pseudogene MGP_AJ_T0095963.1 MGP_AJ_G0035613.1 mouse_genomes_project X 32233940 32235634 - MGP_AJ_P0095963 Gm9 protein_coding protein_coding MGP_AJ_T0016385.1 MGP_AJ_G0014480.1 mouse_genomes_project X 58893003 58894754 - processed_pseudogene processed_pseudogene MGP_AJ_T0097618.1 MGP_AJ_G0036097.1 mouse_genomes_project X 135942075 135948036 - MGP_AJ_P0097618 Serpina7 protein_coding protein_coding MGP_AJ_T0097619.1 MGP_AJ_G0036097.1 mouse_genomes_project X 135942075 135948034 - MGP_AJ_P0097619 Serpina7 protein_coding protein_coding MGP_AJ_T0097620.1 MGP_AJ_G0036097.1 mouse_genomes_project X 135946304 135948055 - MGP_AJ_P0097620 Serpina7 protein_coding protein_coding MGP_AJ_T0101611.1 MGP_AJ_G0039577.1 mouse_genomes_project X 46882784 46882901 + Gm22539 snoRNA snoRNA MGP_AJ_T0095909.1 MGP_AJ_G0035590.1 mouse_genomes_project X 18867438 18892306 + MGP_AJ_P0095909 Gm4907 protein_coding protein_coding MGP_AJ_T0095910.1 MGP_AJ_G0035590.1 mouse_genomes_project X 18877602 18892196 + MGP_AJ_P0095910 Gm4907 protein_coding protein_coding MGP_AJ_T0005603.1 MGP_AJ_G0004721.1 mouse_genomes_project X 100013227 100064718 + Tsix antisense antisense MGP_AJ_T0098497.1 MGP_AJ_G0036481.1 mouse_genomes_project X 46256757 46257864 - pseudogene pseudogene MGP_AJ_T0016878.1 MGP_AJ_G0014973.1 mouse_genomes_project X 158474247 158474851 - processed_pseudogene processed_pseudogene MGP_AJ_T0005611.1 MGP_AJ_G0004725.1 mouse_genomes_project X 152801369 152801942 + Gm15156 antisense antisense MGP_AJ_T0016398.1 MGP_AJ_G0014493.1 mouse_genomes_project X 63392554 63396320 + processed_pseudogene processed_pseudogene MGP_AJ_T0016294.1 MGP_AJ_G0014389.1 mouse_genomes_project X 35978507 35979618 - processed_pseudogene processed_pseudogene MGP_AJ_T0096002.1 MGP_AJ_G0035641.1 mouse_genomes_project X 33038022 33043696 - Btg1-ps2 protein_coding transcribed_unprocessed_pseudogene MGP_AJ_T0096003.1 MGP_AJ_G0035641.1 mouse_genomes_project X 33038022 33043696 - MGP_AJ_P0096003 Btg1-ps2 protein_coding protein_coding MGP_AJ_T0096004.1 MGP_AJ_G0035641.1 mouse_genomes_project X 33038105 33041746 - Btg1-ps2 protein_coding processed_transcript MGP_AJ_T0011123.1 MGP_AJ_G0009245.1 mouse_genomes_project X 15844911 15844968 - Mir5617 miRNA miRNA MGP_AJ_T0097534.1 MGP_AJ_G0036069.1 mouse_genomes_project X 132532187 132581042 + Gprasp2 protein_coding processed_transcript MGP_AJ_T0097535.1 MGP_AJ_G0036069.1 mouse_genomes_project X 132532187 132583976 + MGP_AJ_P0097535 Gprasp2 protein_coding protein_coding MGP_AJ_T0097536.1 MGP_AJ_G0036069.1 mouse_genomes_project X 132532209 132583972 + MGP_AJ_P0097536 Gprasp2 protein_coding protein_coding MGP_AJ_T0097537.1 MGP_AJ_G0036069.1 mouse_genomes_project X 132532244 132534989 + Gprasp2 protein_coding processed_transcript MGP_AJ_T0097538.1 MGP_AJ_G0036069.1 mouse_genomes_project X 132532257 132534864 + Gprasp2 protein_coding processed_transcript MGP_AJ_T0097539.1 MGP_AJ_G0036069.1 mouse_genomes_project X 132532259 132580979 + Gprasp2 protein_coding processed_transcript MGP_AJ_T0097540.1 MGP_AJ_G0036069.1 mouse_genomes_project X 132534064 132580997 + Gprasp2 protein_coding retained_intron MGP_AJ_T0097541.1 MGP_AJ_G0036069.1 mouse_genomes_project X 132534553 132581042 + Gprasp2 protein_coding processed_transcript MGP_AJ_T0097542.1 MGP_AJ_G0036069.1 mouse_genomes_project X 132534757 132536189 + Gprasp2 protein_coding retained_intron MGP_AJ_T0097543.1 MGP_AJ_G0036069.1 mouse_genomes_project X 132535031 132581042 + Gprasp2 protein_coding retained_intron MGP_AJ_T0016213.1 MGP_AJ_G0014308.1 mouse_genomes_project X 4166952 4167216 + processed_pseudogene processed_pseudogene MGP_AJ_T0016574.1 MGP_AJ_G0014669.1 mouse_genomes_project X 98290024 98290547 + processed_pseudogene processed_pseudogene MGP_AJ_T0016459.1 MGP_AJ_G0014554.1 mouse_genomes_project X 74757897 74758269 + processed_pseudogene processed_pseudogene MGP_AJ_T0016715.1 MGP_AJ_G0014810.1 mouse_genomes_project X 127533312 127534706 - processed_pseudogene processed_pseudogene MGP_AJ_T0016270.1 MGP_AJ_G0014365.1 mouse_genomes_project X 18386842 18387292 - processed_pseudogene processed_pseudogene MGP_AJ_T0016328.1 MGP_AJ_G0014423.1 mouse_genomes_project X 45552609 45552992 - processed_pseudogene processed_pseudogene MGP_AJ_T0016535.1 MGP_AJ_G0014630.1 mouse_genomes_project X 90927076 90927694 - processed_pseudogene processed_pseudogene MGP_AJ_T0097288.1 MGP_AJ_G0035986.1 mouse_genomes_project X 103219841 103254500 - MGP_AJ_P0097288 Cysltr1 protein_coding protein_coding MGP_AJ_T0097289.1 MGP_AJ_G0035986.1 mouse_genomes_project X 103223315 103226357 - MGP_AJ_P0097289 Cysltr1 protein_coding protein_coding MGP_AJ_T0097278.1 MGP_AJ_G0035984.1 mouse_genomes_project X 102772880 102785425 - MGP_AJ_P0097278 Taf9b protein_coding protein_coding MGP_AJ_T0097279.1 MGP_AJ_G0035984.1 mouse_genomes_project X 102772880 102784168 - MGP_AJ_P0097279 Taf9b protein_coding protein_coding MGP_AJ_T0097280.1 MGP_AJ_G0035984.1 mouse_genomes_project X 102782606 102785017 - MGP_AJ_P0097280 Taf9b protein_coding protein_coding MGP_AJ_T0097623.1 MGP_AJ_G0036100.1 mouse_genomes_project X 136073372 136100126 + MGP_AJ_P0097623 Mum1l1 protein_coding protein_coding MGP_AJ_T0097624.1 MGP_AJ_G0036100.1 mouse_genomes_project X 136073372 136103484 + MGP_AJ_P0097624 Mum1l1 protein_coding protein_coding MGP_AJ_T0097625.1 MGP_AJ_G0036100.1 mouse_genomes_project X 136073374 136103486 + MGP_AJ_P0097625 Mum1l1 protein_coding protein_coding MGP_AJ_T0097626.1 MGP_AJ_G0036100.1 mouse_genomes_project X 136073438 136076616 + Mum1l1 protein_coding retained_intron MGP_AJ_T0097627.1 MGP_AJ_G0036100.1 mouse_genomes_project X 136080496 136103486 + MGP_AJ_P0097627 Mum1l1 protein_coding protein_coding MGP_AJ_T0097628.1 MGP_AJ_G0036100.1 mouse_genomes_project X 136080496 136103486 + MGP_AJ_P0097628 Mum1l1 protein_coding protein_coding MGP_AJ_T0097629.1 MGP_AJ_G0036100.1 mouse_genomes_project X 136080496 136099953 + MGP_AJ_P0097629 Mum1l1 protein_coding protein_coding MGP_AJ_T0097630.1 MGP_AJ_G0036100.1 mouse_genomes_project X 136080496 136100192 + MGP_AJ_P0097630 Mum1l1 protein_coding protein_coding MGP_AJ_T0100338.1 MGP_AJ_G0038304.1 mouse_genomes_project X 43321988 43322089 + Gm22612 snRNA snRNA MGP_AJ_T0096733.1 MGP_AJ_G0035829.1 mouse_genomes_project X 70397503 70422007 - MGP_AJ_P0096733 G6pdx protein_coding protein_coding MGP_AJ_T0096734.1 MGP_AJ_G0035829.1 mouse_genomes_project X 70398879 70421678 - MGP_AJ_P0096734 G6pdx protein_coding protein_coding MGP_AJ_T0096735.1 MGP_AJ_G0035829.1 mouse_genomes_project X 70401823 70421651 - G6pdx protein_coding processed_transcript MGP_AJ_T0096742.1 MGP_AJ_G0035829.1 mouse_genomes_project X 70420317 70421682 - G6pdx protein_coding retained_intron MGP_AJ_T0009408.1 MGP_AJ_G0007552.1 mouse_genomes_project X 97243937 97252553 + Gm14902 lincRNA lincRNA MGP_AJ_T0097071.1 MGP_AJ_G0035931.1 mouse_genomes_project X 97126024 97129080 - Pdzd11 protein_coding retained_intron MGP_AJ_T0097072.1 MGP_AJ_G0035931.1 mouse_genomes_project X 97126027 97129710 - MGP_AJ_P0097072 Pdzd11 protein_coding protein_coding MGP_AJ_T0097073.1 MGP_AJ_G0035931.1 mouse_genomes_project X 97126049 97129077 - MGP_AJ_P0097073 Pdzd11 protein_coding protein_coding MGP_AJ_T0097074.1 MGP_AJ_G0035931.1 mouse_genomes_project X 97126518 97129413 - Pdzd11 protein_coding processed_transcript MGP_AJ_T0097954.1 MGP_AJ_G0036181.1 mouse_genomes_project X 152381566 152384909 - MGP_AJ_P0097954 Sat1 protein_coding nonsense_mediated_decay MGP_AJ_T0097955.1 MGP_AJ_G0036181.1 mouse_genomes_project X 152381566 152384909 - MGP_AJ_P0097955 Sat1 protein_coding protein_coding MGP_AJ_T0097956.1 MGP_AJ_G0036181.1 mouse_genomes_project X 152381740 152384792 - Sat1 protein_coding retained_intron MGP_AJ_T0097957.1 MGP_AJ_G0036181.1 mouse_genomes_project X 152381740 152383364 - Sat1 protein_coding retained_intron MGP_AJ_T0097958.1 MGP_AJ_G0036181.1 mouse_genomes_project X 152381740 152382494 - Sat1 protein_coding retained_intron MGP_AJ_T0097959.1 MGP_AJ_G0036181.1 mouse_genomes_project X 152381749 152384805 - MGP_AJ_P0097959 Sat1 protein_coding protein_coding MGP_AJ_T0097960.1 MGP_AJ_G0036181.1 mouse_genomes_project X 152383914 152384787 - Sat1 protein_coding retained_intron MGP_AJ_T0009379.1 MGP_AJ_G0007528.1 mouse_genomes_project X 16367289 16371136 - Gm26593 lincRNA lincRNA MGP_AJ_T0011757.1 MGP_AJ_G0009879.1 mouse_genomes_project X 62198313 62198578 + Gm23028 misc_RNA misc_RNA MGP_AJ_T0098856.1 MGP_AJ_G0036840.1 mouse_genomes_project X 90044604 90044742 - Gm23557 scaRNA scaRNA MGP_AJ_T0101909.1 MGP_AJ_G0039772.1 mouse_genomes_project X 132048075 132050902 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0096224.1 MGP_AJ_G0035709.1 mouse_genomes_project X 48820766 48821962 - MGP_AJ_P0096224 protein_coding protein_coding MGP_AJ_T0098766.1 MGP_AJ_G0036750.1 mouse_genomes_project X 8151842 8151954 - n-R5s3 rRNA rRNA MGP_AJ_T0005596.1 MGP_AJ_G0004717.1 mouse_genomes_project X 92782381 92786092 + F630028O10Rik antisense antisense MGP_AJ_T0005597.1 MGP_AJ_G0004717.1 mouse_genomes_project X 92782421 92786092 + F630028O10Rik antisense antisense MGP_AJ_T0016617.1 MGP_AJ_G0014712.1 mouse_genomes_project X 102269473 102270314 + processed_pseudogene processed_pseudogene MGP_AJ_T0016605.1 MGP_AJ_G0014700.1 mouse_genomes_project X 100366760 100367068 + processed_pseudogene processed_pseudogene MGP_AJ_T0097105.1 MGP_AJ_G0035938.1 mouse_genomes_project X 97759692 97766038 + MGP_AJ_P0097105 Foxo4 protein_coding protein_coding MGP_AJ_T0097106.1 MGP_AJ_G0035938.1 mouse_genomes_project X 97759731 97761600 + Foxo4 protein_coding processed_transcript MGP_AJ_T0097107.1 MGP_AJ_G0035938.1 mouse_genomes_project X 97759985 97764398 + MGP_AJ_P0097107 Foxo4 protein_coding protein_coding MGP_AJ_T0100350.1 MGP_AJ_G0038316.1 mouse_genomes_project X 71025506 71025613 - Gm25629 snRNA snRNA MGP_AJ_T0016491.1 MGP_AJ_G0014586.1 mouse_genomes_project X 83908835 83909713 - processed_pseudogene processed_pseudogene MGP_AJ_T0100340.1 MGP_AJ_G0038306.1 mouse_genomes_project X 52213592 52213757 + Gm26312 snRNA snRNA MGP_AJ_T0096271.1 MGP_AJ_G0035728.1 mouse_genomes_project X 52603968 52625599 + MGP_AJ_P0096271 Vgll1 protein_coding protein_coding MGP_AJ_T0096272.1 MGP_AJ_G0035728.1 mouse_genomes_project X 52605174 52624588 + MGP_AJ_P0096272 Vgll1 protein_coding protein_coding MGP_AJ_T0096273.1 MGP_AJ_G0035728.1 mouse_genomes_project X 52605236 52625599 + MGP_AJ_P0096273 Vgll1 protein_coding protein_coding MGP_AJ_T0096274.1 MGP_AJ_G0035728.1 mouse_genomes_project X 52615313 52619211 + MGP_AJ_P0096274 Vgll1 protein_coding protein_coding MGP_AJ_T0018685.1 MGP_AJ_G0015773.1 mouse_genomes_project X 159967692 159969228 - Gm15201 processed_transcript processed_transcript MGP_AJ_T0016600.1 MGP_AJ_G0014695.1 mouse_genomes_project X 100113299 100113524 + processed_pseudogene processed_pseudogene MGP_AJ_T0098187.1 MGP_AJ_G0036237.1 mouse_genomes_project X 163807196 163870489 - MGP_AJ_P0098187 Egfl6 protein_coding protein_coding MGP_AJ_T0011110.1 MGP_AJ_G0009232.1 mouse_genomes_project X 661715 661795 + Gm27907 miRNA miRNA MGP_AJ_T0097443.1 MGP_AJ_G0036043.1 mouse_genomes_project X 130658800 130684643 - MGP_AJ_P0097443 Nox1 protein_coding protein_coding MGP_AJ_T0097444.1 MGP_AJ_G0036043.1 mouse_genomes_project X 130659430 130684554 - MGP_AJ_P0097444 Nox1 protein_coding protein_coding MGP_AJ_T0097445.1 MGP_AJ_G0036043.1 mouse_genomes_project X 130659522 130684497 - MGP_AJ_P0097445 Nox1 protein_coding protein_coding MGP_AJ_T0097446.1 MGP_AJ_G0036043.1 mouse_genomes_project X 130680373 130807731 - MGP_AJ_P0097446 Nox1 protein_coding protein_coding MGP_AJ_T0097447.1 MGP_AJ_G0036043.1 mouse_genomes_project X 130680373 130711541 - MGP_AJ_P0097447 Nox1 protein_coding protein_coding MGP_AJ_T0096507.1 MGP_AJ_G0035803.1 mouse_genomes_project X 69766157 69798933 - MGP_AJ_P0096507 Pdzd4 protein_coding protein_coding MGP_AJ_T0096508.1 MGP_AJ_G0035803.1 mouse_genomes_project X 69766157 69798933 - MGP_AJ_P0096508 Pdzd4 protein_coding protein_coding MGP_AJ_T0016292.1 MGP_AJ_G0014387.1 mouse_genomes_project X 35705613 35706173 + processed_pseudogene processed_pseudogene MGP_AJ_T0096443.1 MGP_AJ_G0035789.1 mouse_genomes_project X 69371054 69389835 + MGP_AJ_P0096443 Zfp92 protein_coding protein_coding MGP_AJ_T0096444.1 MGP_AJ_G0035789.1 mouse_genomes_project X 69371518 69391222 + MGP_AJ_P0096444 Zfp92 protein_coding protein_coding MGP_AJ_T0100327.1 MGP_AJ_G0038293.1 mouse_genomes_project X 15779866 15779971 - Gm26065 snRNA snRNA MGP_AJ_T0097375.1 MGP_AJ_G0036017.1 mouse_genomes_project X 109864559 110416118 + MGP_AJ_P0097375 Dach2 protein_coding protein_coding MGP_AJ_T0097376.1 MGP_AJ_G0036017.1 mouse_genomes_project X 109864559 110421411 + MGP_AJ_P0097376 Dach2 protein_coding protein_coding MGP_AJ_T0097377.1 MGP_AJ_G0036017.1 mouse_genomes_project X 109864592 110420609 + MGP_AJ_P0097377 Dach2 protein_coding protein_coding MGP_AJ_T0097378.1 MGP_AJ_G0036017.1 mouse_genomes_project X 109865268 110330742 + Dach2 protein_coding retained_intron MGP_AJ_T0097379.1 MGP_AJ_G0036017.1 mouse_genomes_project X 109865273 110418457 + MGP_AJ_P0097379 Dach2 protein_coding protein_coding MGP_AJ_T0097380.1 MGP_AJ_G0036017.1 mouse_genomes_project X 109865273 110420918 + MGP_AJ_P0097380 Dach2 protein_coding protein_coding MGP_AJ_T0097381.1 MGP_AJ_G0036017.1 mouse_genomes_project X 109865654 110118739 + Dach2 protein_coding processed_transcript MGP_AJ_T0097382.1 MGP_AJ_G0036017.1 mouse_genomes_project X 110295150 110418457 + Dach2 protein_coding processed_transcript MGP_AJ_T0016636.1 MGP_AJ_G0014731.1 mouse_genomes_project X 106108424 106112227 - processed_pseudogene processed_pseudogene MGP_AJ_T0016820.1 MGP_AJ_G0014915.1 mouse_genomes_project X 147938773 147939432 + processed_pseudogene processed_pseudogene MGP_AJ_T0016876.1 MGP_AJ_G0014971.1 mouse_genomes_project X 157895389 157895672 - processed_pseudogene processed_pseudogene MGP_AJ_T0097672.1 MGP_AJ_G0036113.1 mouse_genomes_project X 137470265 137473403 - Tsc22d3 protein_coding processed_transcript MGP_AJ_T0097673.1 MGP_AJ_G0036113.1 mouse_genomes_project X 137470265 137473923 - MGP_AJ_P0097673 Tsc22d3 protein_coding protein_coding MGP_AJ_T0097674.1 MGP_AJ_G0036113.1 mouse_genomes_project X 137470274 137473836 - Tsc22d3 protein_coding retained_intron MGP_AJ_T0097675.1 MGP_AJ_G0036113.1 mouse_genomes_project X 137470996 137534807 - MGP_AJ_P0097675 Tsc22d3 protein_coding protein_coding MGP_AJ_T0097676.1 MGP_AJ_G0036113.1 mouse_genomes_project X 137471085 137479150 - MGP_AJ_P0097676 Tsc22d3 protein_coding protein_coding MGP_AJ_T0097677.1 MGP_AJ_G0036113.1 mouse_genomes_project X 137473837 137479341 - Tsc22d3 protein_coding processed_transcript MGP_AJ_T0016764.1 MGP_AJ_G0014859.1 mouse_genomes_project X 137742398 137744937 + processed_pseudogene processed_pseudogene MGP_AJ_T0096990.1 MGP_AJ_G0035909.1 mouse_genomes_project X 92644515 92716430 + MGP_AJ_P0096990 Msn protein_coding protein_coding MGP_AJ_T0096991.1 MGP_AJ_G0035909.1 mouse_genomes_project X 92644530 92702189 + Msn protein_coding processed_transcript MGP_AJ_T0096992.1 MGP_AJ_G0035909.1 mouse_genomes_project X 92644570 92700089 + Msn protein_coding processed_transcript MGP_AJ_T0016326.1 MGP_AJ_G0014421.1 mouse_genomes_project X 44953276 44953949 + processed_pseudogene processed_pseudogene MGP_AJ_T0100331.1 MGP_AJ_G0038297.1 mouse_genomes_project X 31410239 31410337 - Gm22364 snRNA snRNA MGP_AJ_T0101915.1 MGP_AJ_G0039777.1 mouse_genomes_project X 166698230 166699949 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0016343.1 MGP_AJ_G0014438.1 mouse_genomes_project X 48748515 48749145 + processed_pseudogene processed_pseudogene MGP_AJ_T0101640.1 MGP_AJ_G0039606.1 mouse_genomes_project X 129069821 129069945 + Gm26406 snoRNA snoRNA MGP_AJ_T0102936.1 MGP_AJ_G0040676.1 mouse_genomes_project X 32935225 32936235 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0011120.1 MGP_AJ_G0009242.1 mouse_genomes_project X 14165218 14165313 - Mir221 miRNA miRNA MGP_AJ_T0011764.1 MGP_AJ_G0009886.1 mouse_genomes_project X 100049885 100050011 - Gm27927 misc_RNA misc_RNA MGP_AJ_T0016832.1 MGP_AJ_G0014927.1 mouse_genomes_project X 150407495 150408476 - processed_pseudogene processed_pseudogene MGP_AJ_T0011193.1 MGP_AJ_G0009315.1 mouse_genomes_project X 100162508 100162603 - Mir374b miRNA miRNA MGP_AJ_T0097554.1 MGP_AJ_G0036075.1 mouse_genomes_project X 132937060 132940328 - MGP_AJ_P0097554 Tceal8 protein_coding protein_coding MGP_AJ_T0097555.1 MGP_AJ_G0036075.1 mouse_genomes_project X 132938157 132940419 - MGP_AJ_P0097555 Tceal8 protein_coding protein_coding MGP_AJ_T0097556.1 MGP_AJ_G0036075.1 mouse_genomes_project X 132938961 132940293 - MGP_AJ_P0097556 Tceal8 protein_coding protein_coding MGP_AJ_T0097557.1 MGP_AJ_G0036075.1 mouse_genomes_project X 132939065 132940278 - MGP_AJ_P0097557 Tceal8 protein_coding protein_coding MGP_AJ_T0097930.1 MGP_AJ_G0036167.1 mouse_genomes_project X 150024359 150025769 - MGP_AJ_P0097930 Mageh1 protein_coding protein_coding MGP_AJ_T0016521.1 MGP_AJ_G0014616.1 mouse_genomes_project X 88476664 88477326 - processed_pseudogene processed_pseudogene MGP_AJ_T0018603.1 MGP_AJ_G0015747.1 mouse_genomes_project X 2291257 2299349 + processed_transcript processed_transcript MGP_AJ_T0016441.1 MGP_AJ_G0014536.1 mouse_genomes_project X 71996992 71998304 + processed_pseudogene processed_pseudogene MGP_AJ_T0095806.1 MGP_AJ_G0035558.1 mouse_genomes_project X 11846778 11874190 - MGP_AJ_P0095806 Ndp protein_coding protein_coding MGP_AJ_T0095922.1 MGP_AJ_G0035595.1 mouse_genomes_project X 31328573 31342832 + Lonrf3 protein_coding retained_intron MGP_AJ_T0095923.1 MGP_AJ_G0035595.1 mouse_genomes_project X 31328573 31362613 + MGP_AJ_P0095923 Lonrf3 protein_coding protein_coding MGP_AJ_T0095924.1 MGP_AJ_G0035595.1 mouse_genomes_project X 31329436 31341975 + MGP_AJ_P0095924 Lonrf3 protein_coding protein_coding MGP_AJ_T0016827.1 MGP_AJ_G0014922.1 mouse_genomes_project X 148726675 148727062 + processed_pseudogene processed_pseudogene MGP_AJ_T0098163.1 MGP_AJ_G0036230.1 mouse_genomes_project X 162233184 162249858 + MGP_AJ_P0098163 Fancb protein_coding protein_coding MGP_AJ_T0098164.1 MGP_AJ_G0036230.1 mouse_genomes_project X 162233184 162249858 + MGP_AJ_P0098164 Fancb protein_coding protein_coding MGP_AJ_T0098165.1 MGP_AJ_G0036230.1 mouse_genomes_project X 162233304 162249861 + MGP_AJ_P0098165 Fancb protein_coding protein_coding MGP_AJ_T0011774.1 MGP_AJ_G0009896.1 mouse_genomes_project X 129934807 129935143 - Gm22552 misc_RNA misc_RNA MGP_AJ_T0095795.1 MGP_AJ_G0035553.1 mouse_genomes_project X 8615011 8620913 + MGP_AJ_P0095795 Gpr82 protein_coding protein_coding MGP_AJ_T0011204.1 MGP_AJ_G0009326.1 mouse_genomes_project X 131375833 131375934 + Mir7093 miRNA miRNA MGP_AJ_T0016719.1 MGP_AJ_G0014814.1 mouse_genomes_project X 128724963 128725865 - processed_pseudogene processed_pseudogene MGP_AJ_T0016753.1 MGP_AJ_G0014848.1 mouse_genomes_project X 134916000 134916207 - processed_pseudogene processed_pseudogene MGP_AJ_T0011135.1 MGP_AJ_G0009257.1 mouse_genomes_project X 47818174 47818249 - Mir363 miRNA miRNA MGP_AJ_T0016560.1 MGP_AJ_G0014655.1 mouse_genomes_project X 94985490 94985978 - processed_pseudogene processed_pseudogene MGP_AJ_T0096206.1 MGP_AJ_G0035701.1 mouse_genomes_project X 48000934 48046642 + MGP_AJ_P0096206 Phf6 protein_coding protein_coding MGP_AJ_T0096207.1 MGP_AJ_G0035701.1 mouse_genomes_project X 48000965 48037735 + MGP_AJ_P0096207 Phf6 protein_coding protein_coding MGP_AJ_T0096208.1 MGP_AJ_G0035701.1 mouse_genomes_project X 48013108 48029195 + Phf6 protein_coding processed_transcript MGP_AJ_T0096209.1 MGP_AJ_G0035701.1 mouse_genomes_project X 48013108 48029176 + Phf6 protein_coding processed_transcript MGP_AJ_T0016285.1 MGP_AJ_G0014380.1 mouse_genomes_project X 34495364 34495771 - processed_pseudogene processed_pseudogene MGP_AJ_T0016245.1 MGP_AJ_G0014340.1 mouse_genomes_project X 12910517 12911354 - processed_pseudogene processed_pseudogene MGP_AJ_T0016438.1 MGP_AJ_G0014533.1 mouse_genomes_project X 71317170 71319099 - processed_pseudogene processed_pseudogene MGP_AJ_T0096696.1 MGP_AJ_G0035823.1 mouse_genomes_project X 70313261 70316439 + Plxna3 protein_coding processed_transcript MGP_AJ_T0096697.1 MGP_AJ_G0035823.1 mouse_genomes_project X 70313261 70328882 + MGP_AJ_P0096697 Plxna3 protein_coding protein_coding MGP_AJ_T0096698.1 MGP_AJ_G0035823.1 mouse_genomes_project X 70316652 70328876 + Plxna3 protein_coding retained_intron MGP_AJ_T0096699.1 MGP_AJ_G0035823.1 mouse_genomes_project X 70317941 70318899 + Plxna3 protein_coding retained_intron MGP_AJ_T0096700.1 MGP_AJ_G0035823.1 mouse_genomes_project X 70318521 70320032 + Plxna3 protein_coding retained_intron MGP_AJ_T0096701.1 MGP_AJ_G0035823.1 mouse_genomes_project X 70319427 70320529 + Plxna3 protein_coding retained_intron MGP_AJ_T0096702.1 MGP_AJ_G0035823.1 mouse_genomes_project X 70322458 70323509 + Plxna3 protein_coding retained_intron MGP_AJ_T0096703.1 MGP_AJ_G0035823.1 mouse_genomes_project X 70322541 70323352 + Plxna3 protein_coding retained_intron MGP_AJ_T0096704.1 MGP_AJ_G0035823.1 mouse_genomes_project X 70325779 70328138 + Plxna3 protein_coding retained_intron MGP_AJ_T0011141.1 MGP_AJ_G0009263.1 mouse_genomes_project X 48140567 48140649 - Mir450b miRNA miRNA MGP_AJ_T0016463.1 MGP_AJ_G0014558.1 mouse_genomes_project X 74993186 74996060 - processed_pseudogene processed_pseudogene MGP_AJ_T0016207.1 MGP_AJ_G0014302.1 mouse_genomes_project X 3671302 3672799 - processed_pseudogene processed_pseudogene MGP_AJ_T0096892.1 MGP_AJ_G0035877.1 mouse_genomes_project X 82383969 82390692 + MGP_AJ_P0096892 Nr0b1 protein_coding protein_coding MGP_AJ_T0016799.1 MGP_AJ_G0014894.1 mouse_genomes_project X 142154553 142155249 - processed_pseudogene processed_pseudogene MGP_AJ_T0011163.1 MGP_AJ_G0009285.1 mouse_genomes_project X 62549952 62550030 - Mir881 miRNA miRNA MGP_AJ_T0101618.1 MGP_AJ_G0039584.1 mouse_genomes_project X 69782974 69783039 + Gm23615 snoRNA snoRNA MGP_AJ_T0018641.1 MGP_AJ_G0015762.1 mouse_genomes_project X 98789455 98915871 + Gm14858 processed_transcript processed_transcript MGP_AJ_T0018642.1 MGP_AJ_G0015762.1 mouse_genomes_project X 98789667 98796663 + Gm14858 processed_transcript processed_transcript MGP_AJ_T0016519.1 MGP_AJ_G0014614.1 mouse_genomes_project X 88332943 88335169 - processed_pseudogene processed_pseudogene MGP_AJ_T0016833.1 MGP_AJ_G0014928.1 mouse_genomes_project X 150513695 150514080 - processed_pseudogene processed_pseudogene MGP_AJ_T0097211.1 MGP_AJ_G0035962.1 mouse_genomes_project X 99736219 99738684 - MGP_AJ_P0097211 Nap1l2 protein_coding protein_coding MGP_AJ_T0016404.1 MGP_AJ_G0014499.1 mouse_genomes_project X 64327614 64327962 + processed_pseudogene processed_pseudogene MGP_AJ_T0096308.1 MGP_AJ_G0035738.1 mouse_genomes_project X 55616914 55743481 - MGP_AJ_P0096308 Mcf2 protein_coding protein_coding MGP_AJ_T0096309.1 MGP_AJ_G0035738.1 mouse_genomes_project X 55616914 55712157 - MGP_AJ_P0096309 Mcf2 protein_coding protein_coding MGP_AJ_T0096310.1 MGP_AJ_G0035738.1 mouse_genomes_project X 55616917 55712100 - MGP_AJ_P0096310 Mcf2 protein_coding protein_coding MGP_AJ_T0102965.1 MGP_AJ_G0040705.1 mouse_genomes_project X 131960454 131963891 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0016627.1 MGP_AJ_G0014722.1 mouse_genomes_project X 103840359 103841244 - processed_pseudogene processed_pseudogene MGP_AJ_T0096800.1 MGP_AJ_G0035846.1 mouse_genomes_project X 71475326 71481424 - MGP_AJ_P0096800 Mtcp1 protein_coding protein_coding MGP_AJ_T0096801.1 MGP_AJ_G0035846.1 mouse_genomes_project X 71475532 71481299 - Mtcp1 protein_coding processed_transcript MGP_AJ_T0096802.1 MGP_AJ_G0035846.1 mouse_genomes_project X 71475659 71481469 - MGP_AJ_P0096802 Mtcp1 protein_coding protein_coding MGP_AJ_T0096803.1 MGP_AJ_G0035846.1 mouse_genomes_project X 71478054 71481449 - Mtcp1 protein_coding retained_intron MGP_AJ_T0096104.1 MGP_AJ_G0035668.1 mouse_genomes_project X 42899108 42952873 + MGP_AJ_P0096104 Ocrl protein_coding protein_coding MGP_AJ_T0096105.1 MGP_AJ_G0035668.1 mouse_genomes_project X 42899159 42944152 + MGP_AJ_P0096105 Ocrl protein_coding protein_coding MGP_AJ_T0096106.1 MGP_AJ_G0035668.1 mouse_genomes_project X 42899176 42944135 + Ocrl protein_coding processed_transcript MGP_AJ_T0096107.1 MGP_AJ_G0035668.1 mouse_genomes_project X 42899188 42902308 + Ocrl protein_coding retained_intron MGP_AJ_T0096108.1 MGP_AJ_G0035668.1 mouse_genomes_project X 42899694 42953437 + MGP_AJ_P0096108 Ocrl protein_coding protein_coding MGP_AJ_T0096109.1 MGP_AJ_G0035668.1 mouse_genomes_project X 42917496 42918639 + Ocrl protein_coding retained_intron MGP_AJ_T0096110.1 MGP_AJ_G0035668.1 mouse_genomes_project X 42925707 42935533 + MGP_AJ_P0096110 Ocrl protein_coding protein_coding MGP_AJ_T0016792.1 MGP_AJ_G0014887.1 mouse_genomes_project X 141145460 141148068 - processed_pseudogene processed_pseudogene MGP_AJ_T0016221.1 MGP_AJ_G0014316.1 mouse_genomes_project X 6823403 6823602 - processed_pseudogene processed_pseudogene MGP_AJ_T0016283.1 MGP_AJ_G0014378.1 mouse_genomes_project X 34141603 34141859 + processed_pseudogene processed_pseudogene MGP_AJ_T0095506.1 MGP_AJ_G0035479.1 mouse_genomes_project X 57146 59514 - MGP_AJ_P0095506 Mycs protein_coding protein_coding MGP_AJ_T0098764.1 MGP_AJ_G0036748.1 mouse_genomes_project X 700806 700925 + n-R5s2 rRNA rRNA MGP_AJ_T0016860.1 MGP_AJ_G0014955.1 mouse_genomes_project X 154881200 154881421 - processed_pseudogene processed_pseudogene MGP_AJ_T0100383.1 MGP_AJ_G0038349.1 mouse_genomes_project X 148206543 148206647 - Gm26441 snRNA snRNA MGP_AJ_T0016317.1 MGP_AJ_G0014412.1 mouse_genomes_project X 42369802 42370704 - processed_pseudogene processed_pseudogene MGP_AJ_T0102954.1 MGP_AJ_G0040694.1 mouse_genomes_project X 82547782 82548805 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0102935.1 MGP_AJ_G0040675.1 mouse_genomes_project X 32754574 32755085 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0016796.1 MGP_AJ_G0014891.1 mouse_genomes_project X 141429753 141431147 - processed_pseudogene processed_pseudogene MGP_AJ_T0016716.1 MGP_AJ_G0014811.1 mouse_genomes_project X 127690351 127691661 - processed_pseudogene processed_pseudogene MGP_AJ_T0016624.1 MGP_AJ_G0014719.1 mouse_genomes_project X 103398353 103398571 + processed_pseudogene processed_pseudogene MGP_AJ_T0009382.1 MGP_AJ_G0007531.1 mouse_genomes_project X 33731922 33759231 - Gm14565 lincRNA lincRNA MGP_AJ_T0018672.1 MGP_AJ_G0015768.1 mouse_genomes_project X 132869069 132879887 + 5730412P04Rik processed_transcript processed_transcript MGP_AJ_T0097691.1 MGP_AJ_G0036119.1 mouse_genomes_project X 137998693 138341476 - MGP_AJ_P0097691 Col4a6 protein_coding protein_coding MGP_AJ_T0097692.1 MGP_AJ_G0036119.1 mouse_genomes_project X 138019472 138042119 - Col4a6 protein_coding processed_transcript MGP_AJ_T0097693.1 MGP_AJ_G0036119.1 mouse_genomes_project X 138023034 138025915 - Col4a6 protein_coding retained_intron MGP_AJ_T0016562.1 MGP_AJ_G0014657.1 mouse_genomes_project X 95429951 95430346 - processed_pseudogene processed_pseudogene MGP_AJ_T0018669.1 MGP_AJ_G0015767.1 mouse_genomes_project X 131678494 131692226 - 3632454L22Rik processed_transcript processed_transcript MGP_AJ_T0018670.1 MGP_AJ_G0015767.1 mouse_genomes_project X 131679293 131716408 - 3632454L22Rik processed_transcript processed_transcript MGP_AJ_T0018671.1 MGP_AJ_G0015767.1 mouse_genomes_project X 131683669 131692680 - 3632454L22Rik processed_transcript processed_transcript MGP_AJ_T0097310.1 MGP_AJ_G0035993.1 mouse_genomes_project X 104066629 104072841 - MGP_AJ_P0097310 Itm2a protein_coding protein_coding MGP_AJ_T0011225.1 MGP_AJ_G0009347.1 mouse_genomes_project X 160109888 160109966 - Mir3473a miRNA miRNA MGP_AJ_T0016741.1 MGP_AJ_G0014836.1 mouse_genomes_project X 133502090 133502497 - processed_pseudogene processed_pseudogene MGP_AJ_T0005617.1 MGP_AJ_G0004730.1 mouse_genomes_project X 164671619 164674564 + Gm15239 antisense antisense MGP_AJ_T0095754.1 MGP_AJ_G0035544.1 mouse_genomes_project X 6953913 6999236 - MGP_AJ_P0095754 protein_coding protein_coding MGP_AJ_T0095755.1 MGP_AJ_G0035544.1 mouse_genomes_project X 6953913 6999236 - MGP_AJ_P0095755 protein_coding protein_coding MGP_AJ_T0095756.1 MGP_AJ_G0035544.1 mouse_genomes_project X 6953913 6999236 - MGP_AJ_P0095756 protein_coding protein_coding MGP_AJ_T0095757.1 MGP_AJ_G0035544.1 mouse_genomes_project X 6953913 6999236 - MGP_AJ_P0095757 protein_coding protein_coding MGP_AJ_T0095758.1 MGP_AJ_G0035544.1 mouse_genomes_project X 6953916 7081370 - MGP_AJ_P0095758 protein_coding protein_coding MGP_AJ_T0095759.1 MGP_AJ_G0035544.1 mouse_genomes_project X 6977030 7048588 - MGP_AJ_P0095759 protein_coding protein_coding MGP_AJ_T0095760.1 MGP_AJ_G0035544.1 mouse_genomes_project X 6977120 7048538 - MGP_AJ_P0095760 protein_coding protein_coding MGP_AJ_T0097426.1 MGP_AJ_G0036039.1 mouse_genomes_project X 130463373 130471297 - MGP_AJ_P0097426 Tspan6 protein_coding protein_coding MGP_AJ_T0097427.1 MGP_AJ_G0036039.1 mouse_genomes_project X 130465006 130471162 - MGP_AJ_P0097427 Tspan6 protein_coding protein_coding MGP_AJ_T0097428.1 MGP_AJ_G0036039.1 mouse_genomes_project X 130467373 130471162 - MGP_AJ_P0097428 Tspan6 protein_coding protein_coding MGP_AJ_T0097429.1 MGP_AJ_G0036039.1 mouse_genomes_project X 130469570 130470981 - Tspan6 protein_coding processed_transcript MGP_AJ_T0016286.1 MGP_AJ_G0014381.1 mouse_genomes_project X 34784004 34784395 - processed_pseudogene processed_pseudogene MGP_AJ_T0097989.1 MGP_AJ_G0036190.1 mouse_genomes_project X 154912431 154965900 + MGP_AJ_P0097989 Smpx protein_coding nonsense_mediated_decay MGP_AJ_T0097990.1 MGP_AJ_G0036190.1 mouse_genomes_project X 154912431 154916534 + MGP_AJ_P0097990 Smpx protein_coding protein_coding MGP_AJ_T0097991.1 MGP_AJ_G0036190.1 mouse_genomes_project X 154912494 154965898 + MGP_AJ_P0097991 Smpx protein_coding protein_coding MGP_AJ_T0097992.1 MGP_AJ_G0036190.1 mouse_genomes_project X 154912648 154965898 + MGP_AJ_P0097992 Smpx protein_coding protein_coding MGP_AJ_T0097993.1 MGP_AJ_G0036190.1 mouse_genomes_project X 154912781 154965523 + MGP_AJ_P0097993 Smpx protein_coding nonsense_mediated_decay MGP_AJ_T0097994.1 MGP_AJ_G0036190.1 mouse_genomes_project X 154916119 154965550 + MGP_AJ_P0097994 Smpx protein_coding protein_coding MGP_AJ_T0097995.1 MGP_AJ_G0036190.1 mouse_genomes_project X 154927768 154965520 + Smpx protein_coding retained_intron MGP_AJ_T0097996.1 MGP_AJ_G0036190.1 mouse_genomes_project X 154933905 154965592 + Smpx protein_coding retained_intron MGP_AJ_T0011127.1 MGP_AJ_G0009249.1 mouse_genomes_project X 33773005 33773071 - Gm25642 miRNA miRNA MGP_AJ_T0016866.1 MGP_AJ_G0014961.1 mouse_genomes_project X 156280095 156280841 - processed_pseudogene processed_pseudogene MGP_AJ_T0016679.1 MGP_AJ_G0014774.1 mouse_genomes_project X 114427610 114429719 - processed_pseudogene processed_pseudogene MGP_AJ_T0016653.1 MGP_AJ_G0014748.1 mouse_genomes_project X 109399491 109399966 - processed_pseudogene processed_pseudogene MGP_AJ_T0095930.1 MGP_AJ_G0035598.1 mouse_genomes_project X 31591833 31600429 + MGP_AJ_P0095930 Pgrmc1 protein_coding protein_coding MGP_AJ_T0096949.1 MGP_AJ_G0035898.1 mouse_genomes_project X 91040586 91047311 - MGP_AJ_P0096949 Maged1 protein_coding protein_coding MGP_AJ_T0096950.1 MGP_AJ_G0035898.1 mouse_genomes_project X 91040588 91042948 - Maged1 protein_coding retained_intron MGP_AJ_T0096951.1 MGP_AJ_G0035898.1 mouse_genomes_project X 91040588 91047158 - Maged1 protein_coding retained_intron MGP_AJ_T0096952.1 MGP_AJ_G0035898.1 mouse_genomes_project X 91040588 91042677 - Maged1 protein_coding retained_intron MGP_AJ_T0096953.1 MGP_AJ_G0035898.1 mouse_genomes_project X 91041194 91042997 - Maged1 protein_coding retained_intron MGP_AJ_T0096954.1 MGP_AJ_G0035898.1 mouse_genomes_project X 91042787 91043939 - Maged1 protein_coding retained_intron MGP_AJ_T0096955.1 MGP_AJ_G0035898.1 mouse_genomes_project X 91045606 91047171 - Maged1 protein_coding retained_intron MGP_AJ_T0016311.1 MGP_AJ_G0014406.1 mouse_genomes_project X 40396857 40398012 - processed_pseudogene processed_pseudogene MGP_AJ_T0011185.1 MGP_AJ_G0009307.1 mouse_genomes_project X 90777904 90777968 + Mir7673 miRNA miRNA MGP_AJ_T0016200.1 MGP_AJ_G0014295.1 mouse_genomes_project X 2329811 2330096 + processed_pseudogene processed_pseudogene MGP_AJ_T0097031.1 MGP_AJ_G0035919.1 mouse_genomes_project X 95473788 95543358 + MGP_AJ_P0097031 Stard8 protein_coding protein_coding MGP_AJ_T0097032.1 MGP_AJ_G0035919.1 mouse_genomes_project X 95521396 95543509 + Stard8 protein_coding processed_transcript MGP_AJ_T0097033.1 MGP_AJ_G0035919.1 mouse_genomes_project X 95521459 95552423 + MGP_AJ_P0097033 Stard8 protein_coding protein_coding MGP_AJ_T0097034.1 MGP_AJ_G0035919.1 mouse_genomes_project X 95546298 95548135 + Stard8 protein_coding processed_transcript MGP_AJ_T0095926.1 MGP_AJ_G0035597.1 mouse_genomes_project X 31424152 31430020 - Gm14569 protein_coding processed_transcript MGP_AJ_T0095927.1 MGP_AJ_G0035597.1 mouse_genomes_project X 31424152 31427232 - Gm14569 protein_coding processed_transcript MGP_AJ_T0095928.1 MGP_AJ_G0035597.1 mouse_genomes_project X 31424152 31483242 - MGP_AJ_P0095928 Gm14569 protein_coding protein_coding MGP_AJ_T0095929.1 MGP_AJ_G0035597.1 mouse_genomes_project X 31439163 31475492 - Gm14569 protein_coding processed_transcript MGP_AJ_T0016551.1 MGP_AJ_G0014646.1 mouse_genomes_project X 92884228 92885080 - processed_pseudogene processed_pseudogene MGP_AJ_T0096221.1 MGP_AJ_G0035706.1 mouse_genomes_project X 48443872 48470051 - MGP_AJ_P0096221 Mospd1 protein_coding unknown_likely_coding MGP_AJ_T0016672.1 MGP_AJ_G0014767.1 mouse_genomes_project X 112757811 112758146 + processed_pseudogene processed_pseudogene MGP_AJ_T0016647.1 MGP_AJ_G0014742.1 mouse_genomes_project X 109058477 109062333 - processed_pseudogene processed_pseudogene MGP_AJ_T0101893.1 MGP_AJ_G0039762.1 mouse_genomes_project X 16367289 16371136 + transcribed_processed_pseudogene processed_transcript MGP_AJ_T0101894.1 MGP_AJ_G0039762.1 mouse_genomes_project X 16367364 16369447 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0096296.1 MGP_AJ_G0035735.1 mouse_genomes_project X 54469293 54484585 + MGP_AJ_P0096296 4930550L24Rik protein_coding protein_coding MGP_AJ_T0096297.1 MGP_AJ_G0035735.1 mouse_genomes_project X 54471403 54484585 + MGP_AJ_P0096297 4930550L24Rik protein_coding protein_coding MGP_AJ_T0097290.1 MGP_AJ_G0035987.1 mouse_genomes_project X 103228681 103360993 + MGP_AJ_P0097290 Gm5127 protein_coding protein_coding MGP_AJ_T0097291.1 MGP_AJ_G0035987.1 mouse_genomes_project X 103228681 103360298 + MGP_AJ_P0097291 Gm5127 protein_coding protein_coding MGP_AJ_T0100382.1 MGP_AJ_G0038348.1 mouse_genomes_project X 143158944 143159004 - Gm26151 snRNA snRNA MGP_AJ_T0098137.1 MGP_AJ_G0036224.1 mouse_genomes_project X 161531629 161630649 + MGP_AJ_P0098137 Pir protein_coding protein_coding MGP_AJ_T0098138.1 MGP_AJ_G0036224.1 mouse_genomes_project X 161531689 161634523 + MGP_AJ_P0098138 Pir protein_coding protein_coding MGP_AJ_T0098139.1 MGP_AJ_G0036224.1 mouse_genomes_project X 161531769 161534132 + Pir protein_coding retained_intron MGP_AJ_T0098140.1 MGP_AJ_G0036224.1 mouse_genomes_project X 161531805 161611755 + Pir protein_coding retained_intron MGP_AJ_T0098141.1 MGP_AJ_G0036224.1 mouse_genomes_project X 161531831 161573408 + Pir protein_coding processed_transcript MGP_AJ_T0016779.1 MGP_AJ_G0014874.1 mouse_genomes_project X 138965716 138966076 + processed_pseudogene processed_pseudogene MGP_AJ_T0096864.1 MGP_AJ_G0035871.1 mouse_genomes_project X 79608728 79609921 - MGP_AJ_P0096864 Tsga8 protein_coding protein_coding MGP_AJ_T0016754.1 MGP_AJ_G0014849.1 mouse_genomes_project X 135356626 135357871 - processed_pseudogene processed_pseudogene MGP_AJ_T0016743.1 MGP_AJ_G0014838.1 mouse_genomes_project X 133729459 133729877 + processed_pseudogene processed_pseudogene MGP_AJ_T0016720.1 MGP_AJ_G0014815.1 mouse_genomes_project X 128745221 128746164 - processed_pseudogene processed_pseudogene MGP_AJ_T0097514.1 MGP_AJ_G0036061.1 mouse_genomes_project X 132203389 132208999 + MGP_AJ_P0097514 protein_coding protein_coding MGP_AJ_T0101624.1 MGP_AJ_G0039590.1 mouse_genomes_project X 74681060 74681194 - Gm22843 snoRNA snoRNA MGP_AJ_T0095626.1 MGP_AJ_G0035505.1 mouse_genomes_project X 2461600 2464400 + Pim2 protein_coding retained_intron MGP_AJ_T0095627.1 MGP_AJ_G0035505.1 mouse_genomes_project X 2461640 2467510 + MGP_AJ_P0095627 Pim2 protein_coding protein_coding MGP_AJ_T0095628.1 MGP_AJ_G0035505.1 mouse_genomes_project X 2461644 2467506 + MGP_AJ_P0095628 Pim2 protein_coding protein_coding MGP_AJ_T0095629.1 MGP_AJ_G0035505.1 mouse_genomes_project X 2461956 2465480 + Pim2 protein_coding processed_transcript MGP_AJ_T0102971.1 MGP_AJ_G0040711.1 mouse_genomes_project X 149054988 149055991 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0100347.1 MGP_AJ_G0038313.1 mouse_genomes_project X 60507034 60507140 + Gm26111 snRNA snRNA MGP_AJ_T0098036.1 MGP_AJ_G0036198.1 mouse_genomes_project X 157186399 157321897 + MGP_AJ_P0098036 Map3k15 protein_coding protein_coding MGP_AJ_T0016241.1 MGP_AJ_G0014336.1 mouse_genomes_project X 11559955 11562550 + processed_pseudogene processed_pseudogene MGP_AJ_T0011129.1 MGP_AJ_G0009251.1 mouse_genomes_project X 36685774 36685859 + Gm22413 miRNA miRNA MGP_AJ_T0016775.1 MGP_AJ_G0014870.1 mouse_genomes_project X 138759147 138759414 - processed_pseudogene processed_pseudogene MGP_AJ_T0016563.1 MGP_AJ_G0014658.1 mouse_genomes_project X 95556779 95557781 - processed_pseudogene processed_pseudogene MGP_AJ_T0018614.1 MGP_AJ_G0015754.1 mouse_genomes_project X 45565557 45651271 - processed_transcript processed_transcript MGP_AJ_T0018615.1 MGP_AJ_G0015754.1 mouse_genomes_project X 45565557 45574483 - processed_transcript processed_transcript MGP_AJ_T0018616.1 MGP_AJ_G0015754.1 mouse_genomes_project X 45565564 45572471 - processed_transcript processed_transcript MGP_AJ_T0018617.1 MGP_AJ_G0015754.1 mouse_genomes_project X 45567741 45580130 - processed_transcript processed_transcript MGP_AJ_T0018618.1 MGP_AJ_G0015754.1 mouse_genomes_project X 45567950 45570628 - processed_transcript processed_transcript MGP_AJ_T0018619.1 MGP_AJ_G0015754.1 mouse_genomes_project X 45569259 45603137 - processed_transcript processed_transcript MGP_AJ_T0018620.1 MGP_AJ_G0015754.1 mouse_genomes_project X 45636811 45651313 - processed_transcript processed_transcript MGP_AJ_T0018621.1 MGP_AJ_G0015754.1 mouse_genomes_project X 45642100 45651321 - processed_transcript processed_transcript MGP_AJ_T0018622.1 MGP_AJ_G0015754.1 mouse_genomes_project X 45642100 45651331 - processed_transcript processed_transcript MGP_AJ_T0011227.1 MGP_AJ_G0009349.1 mouse_genomes_project X 164328492 164328601 - Gm22368 miRNA miRNA MGP_AJ_T0098774.1 MGP_AJ_G0036758.1 mouse_genomes_project X 82620520 82620639 - n-R5s10 rRNA rRNA MGP_AJ_T0096397.1 MGP_AJ_G0035768.1 mouse_genomes_project X 67575415 67580889 + MGP_AJ_P0096397 Gpr50 protein_coding protein_coding MGP_AJ_T0096398.1 MGP_AJ_G0035768.1 mouse_genomes_project X 67575714 67579024 + Gpr50 protein_coding processed_transcript MGP_AJ_T0096399.1 MGP_AJ_G0035768.1 mouse_genomes_project X 67575714 67579024 + Gpr50 protein_coding processed_transcript MGP_AJ_T0011174.1 MGP_AJ_G0009296.1 mouse_genomes_project X 68168894 68168976 - Mir224 miRNA miRNA MGP_AJ_T0095710.1 MGP_AJ_G0035524.1 mouse_genomes_project X 3577980 3586077 + MGP_AJ_P0095710 protein_coding protein_coding MGP_AJ_T0101650.1 MGP_AJ_G0039616.1 mouse_genomes_project X 140308636 140308765 + Gm23325 snoRNA snoRNA MGP_AJ_T0097506.1 MGP_AJ_G0036058.1 mouse_genomes_project X 131598327 131610945 - Nxf2 protein_coding retained_intron MGP_AJ_T0097507.1 MGP_AJ_G0036058.1 mouse_genomes_project X 131598329 131619180 - MGP_AJ_P0097507 Nxf2 protein_coding protein_coding MGP_AJ_T0097508.1 MGP_AJ_G0036058.1 mouse_genomes_project X 131598329 131619180 - MGP_AJ_P0097508 Nxf2 protein_coding protein_coding MGP_AJ_T0097509.1 MGP_AJ_G0036058.1 mouse_genomes_project X 131598554 131618287 - MGP_AJ_P0097509 Nxf2 protein_coding unknown_likely_coding MGP_AJ_T0016814.1 MGP_AJ_G0014909.1 mouse_genomes_project X 147288521 147288725 - processed_pseudogene processed_pseudogene MGP_AJ_T0098037.1 MGP_AJ_G0036199.1 mouse_genomes_project X 157320754 157336790 - MGP_AJ_P0098037 Pdha1 protein_coding protein_coding MGP_AJ_T0098038.1 MGP_AJ_G0036199.1 mouse_genomes_project X 157325836 157327511 - Pdha1 protein_coding retained_intron MGP_AJ_T0098039.1 MGP_AJ_G0036199.1 mouse_genomes_project X 157327833 157336686 - Pdha1 protein_coding retained_intron MGP_AJ_T0098040.1 MGP_AJ_G0036199.1 mouse_genomes_project X 157335273 157336733 - Pdha1 protein_coding processed_transcript MGP_AJ_T0100336.1 MGP_AJ_G0038302.1 mouse_genomes_project X 43240649 43240808 + Gm24038 snRNA snRNA MGP_AJ_T0102958.1 MGP_AJ_G0040698.1 mouse_genomes_project X 88081937 88082856 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0016585.1 MGP_AJ_G0014680.1 mouse_genomes_project X 99628339 99628852 - processed_pseudogene processed_pseudogene MGP_AJ_T0016840.1 MGP_AJ_G0014935.1 mouse_genomes_project X 152316369 152316729 - processed_pseudogene processed_pseudogene MGP_AJ_T0097263.1 MGP_AJ_G0035979.1 mouse_genomes_project X 102519006 102563710 - MGP_AJ_P0097263 Magt1 protein_coding protein_coding MGP_AJ_T0097264.1 MGP_AJ_G0035979.1 mouse_genomes_project X 102519006 102563717 - MGP_AJ_P0097264 Magt1 protein_coding protein_coding MGP_AJ_T0097265.1 MGP_AJ_G0035979.1 mouse_genomes_project X 102521392 102563597 - MGP_AJ_P0097265 Magt1 protein_coding protein_coding MGP_AJ_T0097266.1 MGP_AJ_G0035979.1 mouse_genomes_project X 102527491 102563591 - MGP_AJ_P0097266 Magt1 protein_coding protein_coding MGP_AJ_T0102088.1 MGP_AJ_G0039860.1 mouse_genomes_project X 132174797 132177696 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_AJ_T0095729.1 MGP_AJ_G0035536.1 mouse_genomes_project X 4704059 4704612 + MGP_AJ_P0095729 4930557A04Rik protein_coding protein_coding MGP_AJ_T0097919.1 MGP_AJ_G0036163.1 mouse_genomes_project X 149539202 149539838 + MGP_AJ_P0097919 Cldn34a protein_coding protein_coding MGP_AJ_T0011208.1 MGP_AJ_G0009330.1 mouse_genomes_project X 137232668 137232733 + Mir3475 miRNA miRNA MGP_AJ_T0095838.1 MGP_AJ_G0035571.1 mouse_genomes_project X 15636560 15661429 + MGP_AJ_P0095838 Uba1 protein_coding protein_coding MGP_AJ_T0095839.1 MGP_AJ_G0035571.1 mouse_genomes_project X 15636655 15648593 + Uba1 protein_coding processed_transcript MGP_AJ_T0095840.1 MGP_AJ_G0035571.1 mouse_genomes_project X 15637937 15647507 + Uba1 protein_coding processed_transcript MGP_AJ_T0095841.1 MGP_AJ_G0035571.1 mouse_genomes_project X 15640547 15661429 + MGP_AJ_P0095841 Uba1 protein_coding protein_coding MGP_AJ_T0095842.1 MGP_AJ_G0035571.1 mouse_genomes_project X 15656366 15659450 + Uba1 protein_coding processed_transcript MGP_AJ_T0095843.1 MGP_AJ_G0035571.1 mouse_genomes_project X 15658844 15660455 + Uba1 protein_coding processed_transcript MGP_AJ_T0096757.1 MGP_AJ_G0035836.1 mouse_genomes_project X 70734304 70742575 + MGP_AJ_P0096757 protein_coding protein_coding MGP_AJ_T0102961.1 MGP_AJ_G0040701.1 mouse_genomes_project X 92289939 92290540 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0016582.1 MGP_AJ_G0014677.1 mouse_genomes_project X 99218727 99219402 - processed_pseudogene processed_pseudogene MGP_AJ_T0016389.1 MGP_AJ_G0014484.1 mouse_genomes_project X 60551609 60552932 - processed_pseudogene processed_pseudogene MGP_AJ_T0097574.1 MGP_AJ_G0036083.1 mouse_genomes_project X 133508831 133512328 + MGP_AJ_P0097574 Tceal1 protein_coding protein_coding MGP_AJ_T0097366.1 MGP_AJ_G0036014.1 mouse_genomes_project X 109187121 109213672 + Zfp711 protein_coding retained_intron MGP_AJ_T0097367.1 MGP_AJ_G0036014.1 mouse_genomes_project X 109187121 109222714 + MGP_AJ_P0097367 Zfp711 protein_coding protein_coding MGP_AJ_T0097368.1 MGP_AJ_G0036014.1 mouse_genomes_project X 109190871 109222722 + MGP_AJ_P0097368 Zfp711 protein_coding protein_coding MGP_AJ_T0097369.1 MGP_AJ_G0036014.1 mouse_genomes_project X 109203726 109219562 + MGP_AJ_P0097369 Zfp711 protein_coding protein_coding MGP_AJ_T0097899.1 MGP_AJ_G0036159.1 mouse_genomes_project X 149091014 149173542 + MGP_AJ_P0097899 Iqsec2 protein_coding protein_coding MGP_AJ_T0097900.1 MGP_AJ_G0036159.1 mouse_genomes_project X 149091018 149173543 + MGP_AJ_P0097900 Iqsec2 protein_coding protein_coding MGP_AJ_T0097901.1 MGP_AJ_G0036159.1 mouse_genomes_project X 149091219 149141761 + MGP_AJ_P0097901 Iqsec2 protein_coding unknown_likely_coding MGP_AJ_T0097902.1 MGP_AJ_G0036159.1 mouse_genomes_project X 149126196 149151167 + Iqsec2 protein_coding processed_transcript MGP_AJ_T0097903.1 MGP_AJ_G0036159.1 mouse_genomes_project X 149126196 149141750 + Iqsec2 protein_coding processed_transcript MGP_AJ_T0097904.1 MGP_AJ_G0036159.1 mouse_genomes_project X 149126196 149141750 + Iqsec2 protein_coding processed_transcript MGP_AJ_T0097905.1 MGP_AJ_G0036159.1 mouse_genomes_project X 149150173 149172194 + MGP_AJ_P0097905 Iqsec2 protein_coding protein_coding MGP_AJ_T0096284.1 MGP_AJ_G0035731.1 mouse_genomes_project X 52913144 52923136 - MGP_AJ_P0096284 Rbmx protein_coding nonsense_mediated_decay MGP_AJ_T0096285.1 MGP_AJ_G0035731.1 mouse_genomes_project X 52915972 52923117 - MGP_AJ_P0096285 Rbmx protein_coding protein_coding MGP_AJ_T0096286.1 MGP_AJ_G0035731.1 mouse_genomes_project X 52915976 52923191 - MGP_AJ_P0096286 Rbmx protein_coding protein_coding MGP_AJ_T0096287.1 MGP_AJ_G0035731.1 mouse_genomes_project X 52916530 52923175 - MGP_AJ_P0096287 Rbmx protein_coding protein_coding MGP_AJ_T0096288.1 MGP_AJ_G0035731.1 mouse_genomes_project X 52917634 52923128 - MGP_AJ_P0096288 Rbmx protein_coding unknown_likely_coding MGP_AJ_T0096289.1 MGP_AJ_G0035731.1 mouse_genomes_project X 52919757 52922952 - MGP_AJ_P0096289 Rbmx protein_coding protein_coding MGP_AJ_T0016387.1 MGP_AJ_G0014482.1 mouse_genomes_project X 59748230 59748583 - processed_pseudogene processed_pseudogene MGP_AJ_T0096814.1 MGP_AJ_G0035849.1 mouse_genomes_project X 71648484 71654670 - MGP_AJ_P0096814 Rab39b protein_coding protein_coding MGP_AJ_T0016580.1 MGP_AJ_G0014675.1 mouse_genomes_project X 98745708 98746065 + processed_pseudogene processed_pseudogene MGP_AJ_T0096323.1 MGP_AJ_G0035746.1 mouse_genomes_project X 59847268 59848066 - MGP_AJ_P0096323 Gm6760 protein_coding protein_coding MGP_AJ_T0016736.1 MGP_AJ_G0014831.1 mouse_genomes_project X 132481477 132483298 + processed_pseudogene processed_pseudogene MGP_AJ_T0095991.1 MGP_AJ_G0035632.1 mouse_genomes_project X 32724524 32729627 - MGP_AJ_P0095991 protein_coding protein_coding MGP_AJ_T0016740.1 MGP_AJ_G0014835.1 mouse_genomes_project X 133375077 133375707 - processed_pseudogene processed_pseudogene MGP_AJ_T0016471.1 MGP_AJ_G0014566.1 mouse_genomes_project X 77092722 77092855 - processed_pseudogene processed_pseudogene MGP_AJ_T0095730.1 MGP_AJ_G0035537.1 mouse_genomes_project X 4741181 4839002 + MGP_AJ_P0095730 Sytl5 protein_coding protein_coding MGP_AJ_T0095731.1 MGP_AJ_G0035537.1 mouse_genomes_project X 4741181 4839002 + MGP_AJ_P0095731 Sytl5 protein_coding protein_coding MGP_AJ_T0100335.1 MGP_AJ_G0038301.1 mouse_genomes_project X 40785469 40785576 - Gm25078 snRNA snRNA MGP_AJ_T0102969.1 MGP_AJ_G0040709.1 mouse_genomes_project X 144616425 144618340 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0097057.1 MGP_AJ_G0035926.1 mouse_genomes_project X 96989073 97010762 + MGP_AJ_P0097057 Igbp1 protein_coding protein_coding MGP_AJ_T0097058.1 MGP_AJ_G0035926.1 mouse_genomes_project X 96989137 96994185 + Igbp1 protein_coding retained_intron MGP_AJ_T0097115.1 MGP_AJ_G0035942.1 mouse_genomes_project X 97779051 97802514 + MGP_AJ_P0097115 Med12 protein_coding protein_coding MGP_AJ_T0097116.1 MGP_AJ_G0035942.1 mouse_genomes_project X 97779250 97802514 + MGP_AJ_P0097116 Med12 protein_coding protein_coding MGP_AJ_T0097117.1 MGP_AJ_G0035942.1 mouse_genomes_project X 97779281 97802514 + MGP_AJ_P0097117 Med12 protein_coding protein_coding MGP_AJ_T0097118.1 MGP_AJ_G0035942.1 mouse_genomes_project X 97779281 97802514 + MGP_AJ_P0097118 Med12 protein_coding protein_coding MGP_AJ_T0097119.1 MGP_AJ_G0035942.1 mouse_genomes_project X 97787717 97789179 + Med12 protein_coding retained_intron MGP_AJ_T0097120.1 MGP_AJ_G0035942.1 mouse_genomes_project X 97788207 97788950 + Med12 protein_coding processed_transcript MGP_AJ_T0097121.1 MGP_AJ_G0035942.1 mouse_genomes_project X 97791045 97802514 + Med12 protein_coding retained_intron MGP_AJ_T0097122.1 MGP_AJ_G0035942.1 mouse_genomes_project X 97798155 97801116 + Med12 protein_coding processed_transcript MGP_AJ_T0097123.1 MGP_AJ_G0035942.1 mouse_genomes_project X 97801617 97802436 + Med12 protein_coding processed_transcript MGP_AJ_T0101889.1 MGP_AJ_G0039760.1 mouse_genomes_project X 5271414 5273352 - transcribed_processed_pseudogene processed_transcript MGP_AJ_T0101890.1 MGP_AJ_G0039760.1 mouse_genomes_project X 5272756 5273247 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0016295.1 MGP_AJ_G0014390.1 mouse_genomes_project X 36408467 36408723 + processed_pseudogene processed_pseudogene MGP_AJ_T0096935.1 MGP_AJ_G0035895.1 mouse_genomes_project X 90737508 90741069 + Klhl15 protein_coding processed_transcript MGP_AJ_T0096936.1 MGP_AJ_G0035895.1 mouse_genomes_project X 90737513 90756118 + MGP_AJ_P0096936 Klhl15 protein_coding protein_coding MGP_AJ_T0096937.1 MGP_AJ_G0035895.1 mouse_genomes_project X 90737836 90757441 + MGP_AJ_P0096937 Klhl15 protein_coding protein_coding MGP_AJ_T0096938.1 MGP_AJ_G0035895.1 mouse_genomes_project X 90737839 90776846 + MGP_AJ_P0096938 Klhl15 protein_coding protein_coding MGP_AJ_T0096939.1 MGP_AJ_G0035895.1 mouse_genomes_project X 90737896 90759346 + MGP_AJ_P0096939 Klhl15 protein_coding protein_coding MGP_AJ_T0096940.1 MGP_AJ_G0035895.1 mouse_genomes_project X 90737899 90776075 + Klhl15 protein_coding retained_intron MGP_AJ_T0096941.1 MGP_AJ_G0035895.1 mouse_genomes_project X 90737899 90757445 + MGP_AJ_P0096941 Klhl15 protein_coding protein_coding MGP_AJ_T0096942.1 MGP_AJ_G0035895.1 mouse_genomes_project X 90738220 90776840 + MGP_AJ_P0096942 Klhl15 protein_coding protein_coding MGP_AJ_T0096943.1 MGP_AJ_G0035895.1 mouse_genomes_project X 90738722 90781027 + MGP_AJ_P0096943 Klhl15 protein_coding protein_coding MGP_AJ_T0096460.1 MGP_AJ_G0035795.1 mouse_genomes_project X 69623461 69627175 - MGP_AJ_P0096460 Pnck protein_coding protein_coding MGP_AJ_T0096461.1 MGP_AJ_G0035795.1 mouse_genomes_project X 69623461 69627279 - MGP_AJ_P0096461 Pnck protein_coding protein_coding MGP_AJ_T0096462.1 MGP_AJ_G0035795.1 mouse_genomes_project X 69623462 69627568 - MGP_AJ_P0096462 Pnck protein_coding protein_coding MGP_AJ_T0096463.1 MGP_AJ_G0035795.1 mouse_genomes_project X 69623718 69625299 - Pnck protein_coding retained_intron MGP_AJ_T0096464.1 MGP_AJ_G0035795.1 mouse_genomes_project X 69624743 69626884 - MGP_AJ_P0096464 Pnck protein_coding protein_coding MGP_AJ_T0016858.1 MGP_AJ_G0014953.1 mouse_genomes_project X 154863888 154864484 - processed_pseudogene processed_pseudogene MGP_AJ_T0097186.1 MGP_AJ_G0035954.1 mouse_genomes_project X 98653823 98662081 + MGP_AJ_P0097186 Pin4 protein_coding protein_coding MGP_AJ_T0097187.1 MGP_AJ_G0035954.1 mouse_genomes_project X 98653945 98662078 + Pin4 protein_coding processed_transcript MGP_AJ_T0016606.1 MGP_AJ_G0014701.1 mouse_genomes_project X 100472170 100473184 - processed_pseudogene processed_pseudogene MGP_AJ_T0016603.1 MGP_AJ_G0014698.1 mouse_genomes_project X 100269353 100269672 + processed_pseudogene processed_pseudogene MGP_AJ_T0016604.1 MGP_AJ_G0014699.1 mouse_genomes_project X 100273558 100274276 + processed_pseudogene processed_pseudogene MGP_AJ_T0011200.1 MGP_AJ_G0009322.1 mouse_genomes_project X 109655744 109655814 - Mir361 miRNA miRNA MGP_AJ_T0096833.1 MGP_AJ_G0035859.1 mouse_genomes_project X 74040709 74046640 - MGP_AJ_P0096833 5430402E10Rik protein_coding protein_coding MGP_AJ_T0097638.1 MGP_AJ_G0036104.1 mouse_genomes_project X 136574336 136643563 + MGP_AJ_P0097638 Tbc1d8b protein_coding protein_coding MGP_AJ_T0097639.1 MGP_AJ_G0036104.1 mouse_genomes_project X 136626324 136635396 + Tbc1d8b protein_coding processed_transcript MGP_AJ_T0016708.1 MGP_AJ_G0014803.1 mouse_genomes_project X 126003417 126004419 - processed_pseudogene processed_pseudogene MGP_AJ_T0016783.1 MGP_AJ_G0014878.1 mouse_genomes_project X 139317901 139318114 + processed_pseudogene processed_pseudogene MGP_AJ_T0100355.1 MGP_AJ_G0038321.1 mouse_genomes_project X 89359236 89359341 + Gm25332 snRNA snRNA MGP_AJ_T0097078.1 MGP_AJ_G0035933.1 mouse_genomes_project X 97231321 97233785 + Gdpd2 protein_coding processed_transcript MGP_AJ_T0097079.1 MGP_AJ_G0035933.1 mouse_genomes_project X 97231386 97236549 + Gdpd2 protein_coding retained_intron MGP_AJ_T0097080.1 MGP_AJ_G0035933.1 mouse_genomes_project X 97231390 97241622 + MGP_AJ_P0097080 Gdpd2 protein_coding protein_coding MGP_AJ_T0097081.1 MGP_AJ_G0035933.1 mouse_genomes_project X 97231634 97241622 + MGP_AJ_P0097081 Gdpd2 protein_coding protein_coding MGP_AJ_T0097082.1 MGP_AJ_G0035933.1 mouse_genomes_project X 97239067 97241623 + Gdpd2 protein_coding retained_intron MGP_AJ_T0016772.1 MGP_AJ_G0014867.1 mouse_genomes_project X 138758477 138759450 - processed_pseudogene processed_pseudogene MGP_AJ_T0016483.1 MGP_AJ_G0014578.1 mouse_genomes_project X 81899822 81900408 + processed_pseudogene processed_pseudogene MGP_AJ_T0016523.1 MGP_AJ_G0014618.1 mouse_genomes_project X 89084912 89086472 + processed_pseudogene processed_pseudogene MGP_AJ_T0016428.1 MGP_AJ_G0014523.1 mouse_genomes_project X 70474341 70475174 + processed_pseudogene processed_pseudogene MGP_AJ_T0095667.1 MGP_AJ_G0035517.1 mouse_genomes_project X 2745420 2754938 - MGP_AJ_P0095667 Wdr13 protein_coding protein_coding MGP_AJ_T0095668.1 MGP_AJ_G0035517.1 mouse_genomes_project X 2745422 2754988 - MGP_AJ_P0095668 Wdr13 protein_coding nonsense_mediated_decay MGP_AJ_T0095669.1 MGP_AJ_G0035517.1 mouse_genomes_project X 2745443 2754900 - MGP_AJ_P0095669 Wdr13 protein_coding protein_coding MGP_AJ_T0095670.1 MGP_AJ_G0035517.1 mouse_genomes_project X 2747423 2754953 - MGP_AJ_P0095670 Wdr13 protein_coding nonsense_mediated_decay MGP_AJ_T0095671.1 MGP_AJ_G0035517.1 mouse_genomes_project X 2747527 2754950 - MGP_AJ_P0095671 Wdr13 protein_coding protein_coding MGP_AJ_T0095672.1 MGP_AJ_G0035517.1 mouse_genomes_project X 2747820 2750637 - Wdr13 protein_coding retained_intron MGP_AJ_T0095673.1 MGP_AJ_G0035517.1 mouse_genomes_project X 2750153 2754949 - Wdr13 protein_coding processed_transcript MGP_AJ_T0095674.1 MGP_AJ_G0035517.1 mouse_genomes_project X 2751260 2754975 - MGP_AJ_P0095674 Wdr13 protein_coding protein_coding MGP_AJ_T0095675.1 MGP_AJ_G0035517.1 mouse_genomes_project X 2751837 2754641 - Wdr13 protein_coding retained_intron MGP_AJ_T0095676.1 MGP_AJ_G0035517.1 mouse_genomes_project X 2754246 2755022 - Wdr13 protein_coding processed_transcript MGP_AJ_T0095961.1 MGP_AJ_G0035611.1 mouse_genomes_project X 32203720 32207280 - MGP_AJ_P0095961 Ndufa1 protein_coding protein_coding MGP_AJ_T0097710.1 MGP_AJ_G0036128.1 mouse_genomes_project X 139597420 139754788 + MGP_AJ_P0097710 Tmem164 protein_coding protein_coding MGP_AJ_T0097711.1 MGP_AJ_G0036128.1 mouse_genomes_project X 139598388 139686324 + Tmem164 protein_coding retained_intron MGP_AJ_T0097712.1 MGP_AJ_G0036128.1 mouse_genomes_project X 139686026 139759922 + MGP_AJ_P0097712 Tmem164 protein_coding protein_coding MGP_AJ_T0095666.1 MGP_AJ_G0035516.1 mouse_genomes_project X 2703577 2711879 - MGP_AJ_P0095666 Was protein_coding protein_coding MGP_AJ_T0011188.1 MGP_AJ_G0009310.1 mouse_genomes_project X 95205058 95205156 - Gm27554 miRNA miRNA MGP_AJ_T0097703.1 MGP_AJ_G0036125.1 mouse_genomes_project X 139127109 139139899 + MGP_AJ_P0097703 Nxt2 protein_coding protein_coding MGP_AJ_T0097704.1 MGP_AJ_G0036125.1 mouse_genomes_project X 139128564 139130081 + Nxt2 protein_coding retained_intron MGP_AJ_T0097705.1 MGP_AJ_G0036125.1 mouse_genomes_project X 139128704 139139905 + MGP_AJ_P0097705 Nxt2 protein_coding protein_coding MGP_AJ_T0016877.1 MGP_AJ_G0014972.1 mouse_genomes_project X 157895689 157895819 + processed_pseudogene processed_pseudogene MGP_AJ_T0097025.1 MGP_AJ_G0035918.1 mouse_genomes_project X 95400421 95409258 + MGP_AJ_P0097025 Yipf6 protein_coding protein_coding MGP_AJ_T0097026.1 MGP_AJ_G0035918.1 mouse_genomes_project X 95401406 95407762 + MGP_AJ_P0097026 Yipf6 protein_coding protein_coding MGP_AJ_T0097027.1 MGP_AJ_G0035918.1 mouse_genomes_project X 95401434 95404015 + MGP_AJ_P0097027 Yipf6 protein_coding protein_coding MGP_AJ_T0097028.1 MGP_AJ_G0035918.1 mouse_genomes_project X 95401894 95409033 + Yipf6 protein_coding retained_intron MGP_AJ_T0097029.1 MGP_AJ_G0035918.1 mouse_genomes_project X 95401894 95413146 + MGP_AJ_P0097029 Yipf6 protein_coding protein_coding MGP_AJ_T0097030.1 MGP_AJ_G0035918.1 mouse_genomes_project X 95402340 95408162 + Yipf6 protein_coding retained_intron MGP_AJ_T0016233.1 MGP_AJ_G0014328.1 mouse_genomes_project X 8432182 8432718 - processed_pseudogene processed_pseudogene MGP_AJ_T0016356.1 MGP_AJ_G0014451.1 mouse_genomes_project X 53981767 53982184 - processed_pseudogene processed_pseudogene MGP_AJ_T0009421.1 MGP_AJ_G0007556.1 mouse_genomes_project X 101405107 101429380 + 1700121L16Rik lincRNA lincRNA MGP_AJ_T0097952.1 MGP_AJ_G0036179.1 mouse_genomes_project X 151681537 151692759 - MGP_AJ_P0097952 Samt2 protein_coding protein_coding MGP_AJ_T0096070.1 MGP_AJ_G0035658.1 mouse_genomes_project X 37186947 37314973 + MGP_AJ_P0096070 Stag2 protein_coding protein_coding MGP_AJ_T0096071.1 MGP_AJ_G0035658.1 mouse_genomes_project X 37186973 37314963 + MGP_AJ_P0096071 Stag2 protein_coding protein_coding MGP_AJ_T0096072.1 MGP_AJ_G0035658.1 mouse_genomes_project X 37187077 37313075 + MGP_AJ_P0096072 Stag2 protein_coding unknown_likely_coding MGP_AJ_T0096073.1 MGP_AJ_G0035658.1 mouse_genomes_project X 37187102 37249425 + Stag2 protein_coding retained_intron MGP_AJ_T0096074.1 MGP_AJ_G0035658.1 mouse_genomes_project X 37187244 37242973 + MGP_AJ_P0096074 Stag2 protein_coding protein_coding MGP_AJ_T0096075.1 MGP_AJ_G0035658.1 mouse_genomes_project X 37187715 37248164 + Stag2 protein_coding processed_transcript MGP_AJ_T0096076.1 MGP_AJ_G0035658.1 mouse_genomes_project X 37188128 37314973 + MGP_AJ_P0096076 Stag2 protein_coding protein_coding MGP_AJ_T0096077.1 MGP_AJ_G0035658.1 mouse_genomes_project X 37188441 37242976 + MGP_AJ_P0096077 Stag2 protein_coding protein_coding MGP_AJ_T0096078.1 MGP_AJ_G0035658.1 mouse_genomes_project X 37189607 37257774 + MGP_AJ_P0096078 Stag2 protein_coding protein_coding MGP_AJ_T0016847.1 MGP_AJ_G0014942.1 mouse_genomes_project X 153076630 153077537 + processed_pseudogene processed_pseudogene MGP_AJ_T0101612.1 MGP_AJ_G0039578.1 mouse_genomes_project X 52921603 52921674 - Snord61 snoRNA snoRNA MGP_AJ_T0096838.1 MGP_AJ_G0035863.1 mouse_genomes_project X 74313922 74322991 + MGP_AJ_P0096838 protein_coding protein_coding MGP_AJ_T0097937.1 MGP_AJ_G0036171.1 mouse_genomes_project X 150501355 150504700 + MGP_AJ_P0097937 Ubqln2 protein_coding protein_coding MGP_AJ_T0101898.1 MGP_AJ_G0039765.1 mouse_genomes_project X 32479478 32479929 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0016629.1 MGP_AJ_G0014724.1 mouse_genomes_project X 103947288 103948236 - processed_pseudogene processed_pseudogene MGP_AJ_T0095647.1 MGP_AJ_G0035512.1 mouse_genomes_project X 2514369 2533277 - MGP_AJ_P0095647 Hdac6 protein_coding protein_coding MGP_AJ_T0095648.1 MGP_AJ_G0035512.1 mouse_genomes_project X 2514371 2533277 - MGP_AJ_P0095648 Hdac6 protein_coding protein_coding MGP_AJ_T0095649.1 MGP_AJ_G0035512.1 mouse_genomes_project X 2514373 2533226 - Hdac6 protein_coding retained_intron MGP_AJ_T0095650.1 MGP_AJ_G0035512.1 mouse_genomes_project X 2515608 2533277 - MGP_AJ_P0095650 Hdac6 protein_coding protein_coding MGP_AJ_T0095651.1 MGP_AJ_G0035512.1 mouse_genomes_project X 2515804 2518726 - Hdac6 protein_coding retained_intron MGP_AJ_T0095652.1 MGP_AJ_G0035512.1 mouse_genomes_project X 2522104 2523455 - Hdac6 protein_coding retained_intron MGP_AJ_T0095653.1 MGP_AJ_G0035512.1 mouse_genomes_project X 2522211 2524747 - Hdac6 protein_coding retained_intron MGP_AJ_T0095654.1 MGP_AJ_G0035512.1 mouse_genomes_project X 2528181 2532547 - Hdac6 protein_coding retained_intron MGP_AJ_T0095655.1 MGP_AJ_G0035512.1 mouse_genomes_project X 2528205 2532941 - MGP_AJ_P0095655 Hdac6 protein_coding protein_coding MGP_AJ_T0095656.1 MGP_AJ_G0035512.1 mouse_genomes_project X 2531776 2533155 - MGP_AJ_P0095656 Hdac6 protein_coding protein_coding MGP_AJ_T0097420.1 MGP_AJ_G0036037.1 mouse_genomes_project X 130143341 130259533 - MGP_AJ_P0097420 Pcdh19 protein_coding protein_coding MGP_AJ_T0097421.1 MGP_AJ_G0036037.1 mouse_genomes_project X 130143356 130257830 - MGP_AJ_P0097421 Pcdh19 protein_coding protein_coding MGP_AJ_T0097422.1 MGP_AJ_G0036037.1 mouse_genomes_project X 130143360 130256459 - MGP_AJ_P0097422 Pcdh19 protein_coding protein_coding MGP_AJ_T0097423.1 MGP_AJ_G0036037.1 mouse_genomes_project X 130143361 130148493 - MGP_AJ_P0097423 Pcdh19 protein_coding nonsense_mediated_decay MGP_AJ_T0097424.1 MGP_AJ_G0036037.1 mouse_genomes_project X 130251929 130255557 - Pcdh19 protein_coding processed_transcript MGP_AJ_T0009409.1 MGP_AJ_G0007553.1 mouse_genomes_project X 100040720 100062978 - Xist lincRNA lincRNA MGP_AJ_T0009410.1 MGP_AJ_G0007553.1 mouse_genomes_project X 100049028 100049980 - Xist lincRNA lincRNA MGP_AJ_T0098776.1 MGP_AJ_G0036760.1 mouse_genomes_project X 148720788 148720907 + n-R5s13 rRNA rRNA MGP_AJ_T0016906.1 MGP_AJ_G0015001.1 mouse_genomes_project X 165311870 165312590 + processed_pseudogene processed_pseudogene MGP_AJ_T0016360.1 MGP_AJ_G0014455.1 mouse_genomes_project X 55606157 55607276 - processed_pseudogene processed_pseudogene MGP_AJ_T0097337.1 MGP_AJ_G0036004.1 mouse_genomes_project X 107585331 107588243 + MGP_AJ_P0097337 Pou3f4 protein_coding protein_coding MGP_AJ_T0018597.1 MGP_AJ_G0015744.1 mouse_genomes_project X 1947442 1949560 + Gm14379 processed_transcript processed_transcript MGP_AJ_T0097228.1 MGP_AJ_G0035972.1 mouse_genomes_project X 101065367 101089880 + MGP_AJ_P0097228 Uprt protein_coding protein_coding MGP_AJ_T0096439.1 MGP_AJ_G0035786.1 mouse_genomes_project X 69242605 69246766 + MGP_AJ_P0096439 protein_coding protein_coding MGP_AJ_T0011217.1 MGP_AJ_G0009339.1 mouse_genomes_project X 143945852 143945950 + Mir1298 miRNA miRNA MGP_AJ_T0016373.1 MGP_AJ_G0014468.1 mouse_genomes_project X 57236080 57236515 - processed_pseudogene processed_pseudogene MGP_AJ_T0016671.1 MGP_AJ_G0014766.1 mouse_genomes_project X 112343038 112343892 + processed_pseudogene processed_pseudogene MGP_AJ_T0016503.1 MGP_AJ_G0014598.1 mouse_genomes_project X 85378049 85379215 - processed_pseudogene processed_pseudogene MGP_AJ_T0016698.1 MGP_AJ_G0014793.1 mouse_genomes_project X 118690467 118690763 - processed_pseudogene processed_pseudogene MGP_AJ_T0016639.1 MGP_AJ_G0014734.1 mouse_genomes_project X 107130547 107132953 + processed_pseudogene processed_pseudogene MGP_AJ_T0096356.1 MGP_AJ_G0035759.1 mouse_genomes_project X 66105246 66130044 - MGP_AJ_P0096356 Ids protein_coding protein_coding MGP_AJ_T0096357.1 MGP_AJ_G0035759.1 mouse_genomes_project X 66112432 66123699 - MGP_AJ_P0096357 Ids protein_coding protein_coding MGP_AJ_T0097409.1 MGP_AJ_G0036032.1 mouse_genomes_project X 123290887 123294291 - MGP_AJ_P0097409 4932411N23Rik protein_coding protein_coding MGP_AJ_T0016284.1 MGP_AJ_G0014379.1 mouse_genomes_project X 34243666 34243987 - processed_pseudogene processed_pseudogene MGP_AJ_T0016884.1 MGP_AJ_G0014979.1 mouse_genomes_project X 160015329 160063760 - processed_pseudogene processed_pseudogene MGP_AJ_T0095875.1 MGP_AJ_G0035579.1 mouse_genomes_project X 15924660 15945531 - Uxt protein_coding processed_transcript MGP_AJ_T0095876.1 MGP_AJ_G0035579.1 mouse_genomes_project X 15934588 15945557 - MGP_AJ_P0095876 Uxt protein_coding protein_coding MGP_AJ_T0095877.1 MGP_AJ_G0035579.1 mouse_genomes_project X 15934643 15945575 - MGP_AJ_P0095877 Uxt protein_coding unknown_likely_coding MGP_AJ_T0095878.1 MGP_AJ_G0035579.1 mouse_genomes_project X 15934896 15945577 - MGP_AJ_P0095878 Uxt protein_coding unknown_likely_coding MGP_AJ_T0095879.1 MGP_AJ_G0035579.1 mouse_genomes_project X 15935462 15945455 - Uxt protein_coding retained_intron MGP_AJ_T0095880.1 MGP_AJ_G0035579.1 mouse_genomes_project X 15935468 15945540 - Uxt protein_coding processed_transcript MGP_AJ_T0095881.1 MGP_AJ_G0035579.1 mouse_genomes_project X 15942601 15945526 - Uxt protein_coding retained_intron MGP_AJ_T0095882.1 MGP_AJ_G0035579.1 mouse_genomes_project X 15944956 15945514 - Uxt protein_coding processed_transcript MGP_AJ_T0011785.1 MGP_AJ_G0009907.1 mouse_genomes_project X 160307843 160308099 - Gm23501 misc_RNA misc_RNA MGP_AJ_T0016590.1 MGP_AJ_G0014685.1 mouse_genomes_project X 99786355 99786803 + processed_pseudogene processed_pseudogene MGP_AJ_T0016668.1 MGP_AJ_G0014763.1 mouse_genomes_project X 111992487 111993535 - processed_pseudogene processed_pseudogene MGP_AJ_T0096455.1 MGP_AJ_G0035793.1 mouse_genomes_project X 69469992 69537553 + MGP_AJ_P0096455 Atp2b3 protein_coding protein_coding MGP_AJ_T0096456.1 MGP_AJ_G0035793.1 mouse_genomes_project X 69469992 69537553 + MGP_AJ_P0096456 Atp2b3 protein_coding protein_coding MGP_AJ_T0096457.1 MGP_AJ_G0035793.1 mouse_genomes_project X 69469992 69524760 + MGP_AJ_P0096457 Atp2b3 protein_coding protein_coding MGP_AJ_T0096458.1 MGP_AJ_G0035793.1 mouse_genomes_project X 69470051 69527067 + MGP_AJ_P0096458 Atp2b3 protein_coding unknown_likely_coding MGP_AJ_T0016465.1 MGP_AJ_G0014560.1 mouse_genomes_project X 76055429 76056262 - processed_pseudogene processed_pseudogene MGP_AJ_T0016198.1 MGP_AJ_G0014293.1 mouse_genomes_project X 2118283 2118578 - processed_pseudogene processed_pseudogene MGP_AJ_T0011186.1 MGP_AJ_G0009308.1 mouse_genomes_project X 90900634 90900744 - Gm44477 miRNA miRNA MGP_AJ_T0100334.1 MGP_AJ_G0038300.1 mouse_genomes_project X 38284443 38284633 + Gm24763 snRNA snRNA MGP_AJ_T0016751.1 MGP_AJ_G0014846.1 mouse_genomes_project X 134047438 134050042 - processed_pseudogene processed_pseudogene MGP_AJ_T0101910.1 MGP_AJ_G0039773.1 mouse_genomes_project X 133610754 133611076 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0016752.1 MGP_AJ_G0014847.1 mouse_genomes_project X 134468462 134471897 - processed_pseudogene processed_pseudogene MGP_AJ_T0097191.1 MGP_AJ_G0035957.1 mouse_genomes_project X 98783914 98789169 - MGP_AJ_P0097191 Cited1 protein_coding protein_coding MGP_AJ_T0097192.1 MGP_AJ_G0035957.1 mouse_genomes_project X 98783937 98788840 - MGP_AJ_P0097192 Cited1 protein_coding protein_coding MGP_AJ_T0097193.1 MGP_AJ_G0035957.1 mouse_genomes_project X 98784258 98787934 - MGP_AJ_P0097193 Cited1 protein_coding protein_coding MGP_AJ_T0097194.1 MGP_AJ_G0035957.1 mouse_genomes_project X 98784365 98787681 - MGP_AJ_P0097194 Cited1 protein_coding protein_coding MGP_AJ_T0097195.1 MGP_AJ_G0035957.1 mouse_genomes_project X 98784430 98788906 - MGP_AJ_P0097195 Cited1 protein_coding protein_coding MGP_AJ_T0098116.1 MGP_AJ_G0036218.1 mouse_genomes_project X 161181897 161205512 - MGP_AJ_P0098116 Zrsr2 protein_coding protein_coding MGP_AJ_T0098117.1 MGP_AJ_G0036218.1 mouse_genomes_project X 161185976 161197120 - Zrsr2 protein_coding retained_intron MGP_AJ_T0098118.1 MGP_AJ_G0036218.1 mouse_genomes_project X 161186879 161190388 - Zrsr2 protein_coding retained_intron MGP_AJ_T0098119.1 MGP_AJ_G0036218.1 mouse_genomes_project X 161195842 161197362 - Zrsr2 protein_coding retained_intron MGP_AJ_T0098120.1 MGP_AJ_G0036218.1 mouse_genomes_project X 161197289 161205521 - MGP_AJ_P0098120 Zrsr2 protein_coding protein_coding MGP_AJ_T0098121.1 MGP_AJ_G0036218.1 mouse_genomes_project X 161200494 161205066 - Zrsr2 protein_coding processed_transcript MGP_AJ_T0098122.1 MGP_AJ_G0036218.1 mouse_genomes_project X 161200543 161205475 - MGP_AJ_P0098122 Zrsr2 protein_coding protein_coding MGP_AJ_T0098123.1 MGP_AJ_G0036218.1 mouse_genomes_project X 161203375 161205584 - MGP_AJ_P0098123 Zrsr2 protein_coding protein_coding MGP_AJ_T0016891.1 MGP_AJ_G0014986.1 mouse_genomes_project X 160709106 160710591 + processed_pseudogene processed_pseudogene MGP_AJ_T0097293.1 MGP_AJ_G0035989.1 mouse_genomes_project X 103565169 103580910 + MGP_AJ_P0097293 Lpar4 protein_coding protein_coding MGP_AJ_T0096355.1 MGP_AJ_G0035758.1 mouse_genomes_project X 65703574 65704253 + MGP_AJ_P0096355 protein_coding protein_coding MGP_AJ_T0016334.1 MGP_AJ_G0014429.1 mouse_genomes_project X 46279237 46279926 - processed_pseudogene processed_pseudogene MGP_AJ_T0016468.1 MGP_AJ_G0014563.1 mouse_genomes_project X 76523336 76524021 + processed_pseudogene processed_pseudogene MGP_AJ_T0095509.1 MGP_AJ_G0035481.1 mouse_genomes_project X 774750 779069 - MGP_AJ_P0095509 Nudt10 protein_coding protein_coding MGP_AJ_T0011153.1 MGP_AJ_G0009275.1 mouse_genomes_project X 62515956 62516018 - Mir743 miRNA miRNA MGP_AJ_T0016654.1 MGP_AJ_G0014749.1 mouse_genomes_project X 109531741 109531949 + processed_pseudogene processed_pseudogene MGP_AJ_T0016862.1 MGP_AJ_G0014957.1 mouse_genomes_project X 155378440 155381102 + processed_pseudogene processed_pseudogene MGP_AJ_T0096364.1 MGP_AJ_G0035763.1 mouse_genomes_project X 66888451 66999032 + MGP_AJ_P0096364 Mamld1 protein_coding protein_coding MGP_AJ_T0096365.1 MGP_AJ_G0035763.1 mouse_genomes_project X 66888451 67000371 + MGP_AJ_P0096365 Mamld1 protein_coding protein_coding MGP_AJ_T0098228.1 MGP_AJ_G0036248.1 mouse_genomes_project X 167107508 167111253 - MGP_AJ_P0098228 4933400A11Rik protein_coding protein_coding MGP_AJ_T0098229.1 MGP_AJ_G0036248.1 mouse_genomes_project X 167107629 167111296 - MGP_AJ_P0098229 4933400A11Rik protein_coding protein_coding MGP_AJ_T0098230.1 MGP_AJ_G0036248.1 mouse_genomes_project X 167107676 167111218 - MGP_AJ_P0098230 4933400A11Rik protein_coding protein_coding MGP_AJ_T0102976.1 MGP_AJ_G0040716.1 mouse_genomes_project X 157492911 157493204 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0011173.1 MGP_AJ_G0009295.1 mouse_genomes_project X 67424668 67424760 - Gm23945 miRNA miRNA MGP_AJ_T0016829.1 MGP_AJ_G0014924.1 mouse_genomes_project X 149541080 149541606 + processed_pseudogene processed_pseudogene MGP_AJ_T0016513.1 MGP_AJ_G0014608.1 mouse_genomes_project X 87694415 87695439 - processed_pseudogene processed_pseudogene MGP_AJ_T0016791.1 MGP_AJ_G0014886.1 mouse_genomes_project X 141132248 141132404 - processed_pseudogene processed_pseudogene MGP_AJ_T0096981.1 MGP_AJ_G0035907.1 mouse_genomes_project X 92289796 92290529 - MGP_AJ_P0096981 Gm5941 protein_coding protein_coding MGP_AJ_T0011184.1 MGP_AJ_G0009306.1 mouse_genomes_project X 81765679 81765762 + Gm44378 miRNA miRNA MGP_AJ_T0098083.1 MGP_AJ_G0036210.1 mouse_genomes_project X 159994353 160013330 + MGP_AJ_P0098083 Rbbp7 protein_coding protein_coding MGP_AJ_T0098084.1 MGP_AJ_G0036210.1 mouse_genomes_project X 159994372 160012994 + MGP_AJ_P0098084 Rbbp7 protein_coding protein_coding MGP_AJ_T0098085.1 MGP_AJ_G0036210.1 mouse_genomes_project X 159994413 160009839 + MGP_AJ_P0098085 Rbbp7 protein_coding protein_coding MGP_AJ_T0098086.1 MGP_AJ_G0036210.1 mouse_genomes_project X 159995018 160006174 + MGP_AJ_P0098086 Rbbp7 protein_coding protein_coding MGP_AJ_T0098087.1 MGP_AJ_G0036210.1 mouse_genomes_project X 160008521 160012779 + MGP_AJ_P0098087 Rbbp7 protein_coding protein_coding MGP_AJ_T0100375.1 MGP_AJ_G0038341.1 mouse_genomes_project X 125179838 125179946 + Gm24522 snRNA snRNA MGP_AJ_T0097607.1 MGP_AJ_G0036092.1 mouse_genomes_project X 133878738 133912165 + MGP_AJ_P0097607 Fam199x protein_coding protein_coding MGP_AJ_T0016673.1 MGP_AJ_G0014768.1 mouse_genomes_project X 113429952 113430255 + processed_pseudogene processed_pseudogene MGP_AJ_T0100360.1 MGP_AJ_G0038326.1 mouse_genomes_project X 98442072 98442167 - Gm25828 snRNA snRNA MGP_AJ_T0097654.1 MGP_AJ_G0036108.1 mouse_genomes_project X 136788699 136894107 - MGP_AJ_P0097654 Rbm41 protein_coding protein_coding MGP_AJ_T0097655.1 MGP_AJ_G0036108.1 mouse_genomes_project X 136839690 136894069 - MGP_AJ_P0097655 Rbm41 protein_coding protein_coding MGP_AJ_T0097656.1 MGP_AJ_G0036108.1 mouse_genomes_project X 136839722 136894054 - MGP_AJ_P0097656 Rbm41 protein_coding protein_coding MGP_AJ_T0097657.1 MGP_AJ_G0036108.1 mouse_genomes_project X 136840553 136894063 - MGP_AJ_P0097657 Rbm41 protein_coding protein_coding MGP_AJ_T0097658.1 MGP_AJ_G0036108.1 mouse_genomes_project X 136858123 136889596 - Rbm41 protein_coding retained_intron MGP_AJ_T0097659.1 MGP_AJ_G0036108.1 mouse_genomes_project X 136858909 136894048 - Rbm41 protein_coding processed_transcript MGP_AJ_T0097660.1 MGP_AJ_G0036108.1 mouse_genomes_project X 136887870 136894078 - Rbm41 protein_coding retained_intron MGP_AJ_T0095931.1 MGP_AJ_G0035599.1 mouse_genomes_project X 31602663 31639877 - MGP_AJ_P0095931 Akap17b protein_coding protein_coding MGP_AJ_T0095932.1 MGP_AJ_G0035599.1 mouse_genomes_project X 31606228 31639578 - MGP_AJ_P0095932 Akap17b protein_coding protein_coding MGP_AJ_T0016710.1 MGP_AJ_G0014805.1 mouse_genomes_project X 126096472 126096795 - processed_pseudogene processed_pseudogene MGP_AJ_T0100376.1 MGP_AJ_G0038342.1 mouse_genomes_project X 131094929 131095036 + Gm23124 snRNA snRNA MGP_AJ_T0101642.1 MGP_AJ_G0039608.1 mouse_genomes_project X 131835453 131835567 + snoRNA snoRNA MGP_AJ_T0009388.1 MGP_AJ_G0007535.1 mouse_genomes_project X 51791570 51794629 + 1600025M17Rik lincRNA lincRNA MGP_AJ_T0009389.1 MGP_AJ_G0007535.1 mouse_genomes_project X 51791628 51793489 + 1600025M17Rik lincRNA lincRNA MGP_AJ_T0096446.1 MGP_AJ_G0035791.1 mouse_genomes_project X 69400153 69424040 - MGP_AJ_P0096446 Haus7 protein_coding protein_coding MGP_AJ_T0097551.1 MGP_AJ_G0036073.1 mouse_genomes_project X 132826242 132827964 - MGP_AJ_P0097551 Bex2 protein_coding protein_coding MGP_AJ_T0096230.1 MGP_AJ_G0035714.1 mouse_genomes_project X 51650258 51670040 - MGP_AJ_P0096230 Gm773 protein_coding protein_coding MGP_AJ_T0096231.1 MGP_AJ_G0035714.1 mouse_genomes_project X 51650471 51670040 - Gm773 protein_coding processed_transcript MGP_AJ_T0016205.1 MGP_AJ_G0014300.1 mouse_genomes_project X 2666980 2667151 + processed_pseudogene processed_pseudogene MGP_AJ_T0016578.1 MGP_AJ_G0014673.1 mouse_genomes_project X 98714236 98714710 - processed_pseudogene processed_pseudogene MGP_AJ_T0011191.1 MGP_AJ_G0009313.1 mouse_genomes_project X 98794331 98794427 - Gm26318 miRNA miRNA MGP_AJ_T0098094.1 MGP_AJ_G0036212.1 mouse_genomes_project X 160091983 160124336 - MGP_AJ_P0098094 Syap1 protein_coding protein_coding MGP_AJ_T0098095.1 MGP_AJ_G0036212.1 mouse_genomes_project X 160092835 160098306 - Syap1 protein_coding retained_intron MGP_AJ_T0016608.1 MGP_AJ_G0014703.1 mouse_genomes_project X 100591094 100591366 - processed_pseudogene processed_pseudogene MGP_AJ_T0097525.1 MGP_AJ_G0036066.1 mouse_genomes_project X 132452997 132459520 - MGP_AJ_P0097525 protein_coding protein_coding MGP_AJ_T0097526.1 MGP_AJ_G0036066.1 mouse_genomes_project X 132452997 132455345 - MGP_AJ_P0097526 protein_coding protein_coding MGP_AJ_T0095644.1 MGP_AJ_G0035509.1 mouse_genomes_project X 2493070 2493456 + MGP_AJ_P0095644 protein_coding protein_coding MGP_AJ_T0095964.1 MGP_AJ_G0035614.1 mouse_genomes_project X 32238396 32247568 - MGP_AJ_P0095964 Rhox1 protein_coding protein_coding MGP_AJ_T0016635.1 MGP_AJ_G0014730.1 mouse_genomes_project X 105825619 105826503 - processed_pseudogene processed_pseudogene MGP_AJ_T0095895.1 MGP_AJ_G0035585.1 mouse_genomes_project X 16497425 16502073 + MGP_AJ_P0095895 Agtr2 protein_coding protein_coding MGP_AJ_T0095896.1 MGP_AJ_G0035585.1 mouse_genomes_project X 16497603 16499185 + Agtr2 protein_coding processed_transcript MGP_AJ_T0016197.1 MGP_AJ_G0014292.1 mouse_genomes_project X 2106925 2107488 - processed_pseudogene processed_pseudogene MGP_AJ_T0097318.1 MGP_AJ_G0035996.1 mouse_genomes_project X 104448242 104529081 + MGP_AJ_P0097318 Fam46d protein_coding protein_coding MGP_AJ_T0097319.1 MGP_AJ_G0035996.1 mouse_genomes_project X 104472305 104526731 + MGP_AJ_P0097319 Fam46d protein_coding protein_coding MGP_AJ_T0097320.1 MGP_AJ_G0035996.1 mouse_genomes_project X 104472400 104529081 + MGP_AJ_P0097320 Fam46d protein_coding protein_coding MGP_AJ_T0097321.1 MGP_AJ_G0035996.1 mouse_genomes_project X 104472400 104526572 + MGP_AJ_P0097321 Fam46d protein_coding protein_coding MGP_AJ_T0098132.1 MGP_AJ_G0036222.1 mouse_genomes_project X 161400318 161449784 + MGP_AJ_P0098132 Ace2 protein_coding protein_coding MGP_AJ_T0098133.1 MGP_AJ_G0036222.1 mouse_genomes_project X 161401464 161449784 + MGP_AJ_P0098133 Ace2 protein_coding protein_coding MGP_AJ_T0098134.1 MGP_AJ_G0036222.1 mouse_genomes_project X 161423387 161447188 + MGP_AJ_P0098134 Ace2 protein_coding protein_coding MGP_AJ_T0016622.1 MGP_AJ_G0014717.1 mouse_genomes_project X 103285099 103285606 - processed_pseudogene processed_pseudogene MGP_AJ_T0018598.1 MGP_AJ_G0015745.1 mouse_genomes_project X 1983077 1992394 - 2010204K13Rik processed_transcript processed_transcript MGP_AJ_T0018599.1 MGP_AJ_G0015745.1 mouse_genomes_project X 1983347 1984086 - 2010204K13Rik processed_transcript processed_transcript MGP_AJ_T0018600.1 MGP_AJ_G0015745.1 mouse_genomes_project X 1983363 1994297 - 2010204K13Rik processed_transcript processed_transcript MGP_AJ_T0018601.1 MGP_AJ_G0015745.1 mouse_genomes_project X 1983366 2018354 - 2010204K13Rik processed_transcript processed_transcript MGP_AJ_T0097997.1 MGP_AJ_G0036191.1 mouse_genomes_project X 155024524 155026459 + MGP_AJ_P0097997 Klhl34 protein_coding protein_coding MGP_AJ_T0016757.1 MGP_AJ_G0014852.1 mouse_genomes_project X 136125878 136126518 - processed_pseudogene processed_pseudogene MGP_AJ_T0095962.1 MGP_AJ_G0035612.1 mouse_genomes_project X 32207361 32208584 + MGP_AJ_P0095962 Rnf113a1 protein_coding protein_coding MGP_AJ_T0016558.1 MGP_AJ_G0014653.1 mouse_genomes_project X 94354738 94355465 + processed_pseudogene processed_pseudogene MGP_AJ_T0016430.1 MGP_AJ_G0014525.1 mouse_genomes_project X 70509357 70509745 + processed_pseudogene processed_pseudogene MGP_AJ_T0096902.1 MGP_AJ_G0035884.1 mouse_genomes_project X 88033412 88034077 - MGP_AJ_P0096902 1700084M14Rik protein_coding protein_coding MGP_AJ_T0097731.1 MGP_AJ_G0036134.1 mouse_genomes_project X 140743009 140826515 - MGP_AJ_P0097731 Dcx protein_coding protein_coding MGP_AJ_T0097732.1 MGP_AJ_G0036134.1 mouse_genomes_project X 140747883 140826408 - MGP_AJ_P0097732 Dcx protein_coding protein_coding MGP_AJ_T0097733.1 MGP_AJ_G0036134.1 mouse_genomes_project X 140748955 140826328 - MGP_AJ_P0097733 Dcx protein_coding protein_coding MGP_AJ_T0097734.1 MGP_AJ_G0036134.1 mouse_genomes_project X 140750638 140826423 - MGP_AJ_P0097734 Dcx protein_coding protein_coding MGP_AJ_T0097735.1 MGP_AJ_G0036134.1 mouse_genomes_project X 140756373 140826254 - Dcx protein_coding retained_intron MGP_AJ_T0097736.1 MGP_AJ_G0036134.1 mouse_genomes_project X 140760925 140826323 - Dcx protein_coding retained_intron MGP_AJ_T0016369.1 MGP_AJ_G0014464.1 mouse_genomes_project X 56559356 56560081 - processed_pseudogene processed_pseudogene MGP_AJ_T0016623.1 MGP_AJ_G0014718.1 mouse_genomes_project X 103293667 103295021 - processed_pseudogene processed_pseudogene MGP_AJ_T0098111.1 MGP_AJ_G0036216.1 mouse_genomes_project X 161005309 161006500 - MGP_AJ_P0098111 Rnf138rt1 protein_coding protein_coding MGP_AJ_T0097210.1 MGP_AJ_G0035961.1 mouse_genomes_project X 99469907 99470653 + MGP_AJ_P0097210 Gm9112 protein_coding protein_coding MGP_AJ_T0016567.1 MGP_AJ_G0014662.1 mouse_genomes_project X 96811818 96812956 + processed_pseudogene processed_pseudogene MGP_AJ_T0095925.1 MGP_AJ_G0035596.1 mouse_genomes_project X 31403806 31404985 + MGP_AJ_P0095925 protein_coding protein_coding MGP_AJ_T0095717.1 MGP_AJ_G0035531.1 mouse_genomes_project X 4032296 4038269 - MGP_AJ_P0095717 Gm14862 protein_coding protein_coding MGP_AJ_T0011224.1 MGP_AJ_G0009346.1 mouse_genomes_project X 154366057 154366159 + Gm23798 miRNA miRNA MGP_AJ_T0016695.1 MGP_AJ_G0014790.1 mouse_genomes_project X 118292072 118295056 + processed_pseudogene processed_pseudogene MGP_AJ_T0095871.1 MGP_AJ_G0035577.1 mouse_genomes_project X 15908572 15914674 - MGP_AJ_P0095871 Cfp protein_coding protein_coding MGP_AJ_T0095872.1 MGP_AJ_G0035577.1 mouse_genomes_project X 15908769 15910733 - Cfp protein_coding processed_transcript MGP_AJ_T0016817.1 MGP_AJ_G0014912.1 mouse_genomes_project X 147615330 147615979 + processed_pseudogene processed_pseudogene MGP_AJ_T0096433.1 MGP_AJ_G0035782.1 mouse_genomes_project X 68925048 68928600 - MGP_AJ_P0096433 Pnma5 protein_coding protein_coding MGP_AJ_T0096434.1 MGP_AJ_G0035782.1 mouse_genomes_project X 68925055 68927600 - MGP_AJ_P0096434 Pnma5 protein_coding protein_coding MGP_AJ_T0096435.1 MGP_AJ_G0035782.1 mouse_genomes_project X 68925386 68928600 - MGP_AJ_P0096435 Pnma5 protein_coding protein_coding MGP_AJ_T0095867.1 MGP_AJ_G0035575.1 mouse_genomes_project X 15842296 15904033 - MGP_AJ_P0095867 Syn1 protein_coding protein_coding MGP_AJ_T0095868.1 MGP_AJ_G0035575.1 mouse_genomes_project X 15842300 15903947 - MGP_AJ_P0095868 Syn1 protein_coding protein_coding MGP_AJ_T0096111.1 MGP_AJ_G0035669.1 mouse_genomes_project X 43018828 43028895 - MGP_AJ_P0096111 Apln protein_coding protein_coding MGP_AJ_T0016220.1 MGP_AJ_G0014315.1 mouse_genomes_project X 6772550 6772991 + processed_pseudogene processed_pseudogene MGP_AJ_T0098109.1 MGP_AJ_G0036214.1 mouse_genomes_project X 160201955 160204555 - MGP_AJ_P0098109 S100g protein_coding protein_coding MGP_AJ_T0016375.1 MGP_AJ_G0014470.1 mouse_genomes_project X 57403500 57406285 + processed_pseudogene processed_pseudogene MGP_AJ_T0009393.1 MGP_AJ_G0007538.1 mouse_genomes_project X 63187697 63189672 + lincRNA lincRNA MGP_AJ_T0098806.1 MGP_AJ_G0036790.1 mouse_genomes_project X 149860058 149860299 + Gm24687 ribozyme ribozyme MGP_AJ_T0016905.1 MGP_AJ_G0015000.1 mouse_genomes_project X 165097962 165099258 + processed_pseudogene processed_pseudogene MGP_AJ_T0016625.1 MGP_AJ_G0014720.1 mouse_genomes_project X 103398756 103399162 + processed_pseudogene processed_pseudogene MGP_AJ_T0016327.1 MGP_AJ_G0014422.1 mouse_genomes_project X 45380553 45381433 + processed_pseudogene processed_pseudogene MGP_AJ_T0095984.1 MGP_AJ_G0035629.1 mouse_genomes_project X 32656882 32662111 + MGP_AJ_P0095984 protein_coding protein_coding MGP_AJ_T0016272.1 MGP_AJ_G0014367.1 mouse_genomes_project X 30782098 30783331 + processed_pseudogene processed_pseudogene MGP_AJ_T0016854.1 MGP_AJ_G0014949.1 mouse_genomes_project X 154755461 154756600 + processed_pseudogene processed_pseudogene MGP_AJ_T0016909.1 MGP_AJ_G0015004.1 mouse_genomes_project X 165880294 165880627 + processed_pseudogene processed_pseudogene MGP_AJ_T0016437.1 MGP_AJ_G0014532.1 mouse_genomes_project X 71186432 71186639 + processed_pseudogene processed_pseudogene MGP_AJ_T0016767.1 MGP_AJ_G0014862.1 mouse_genomes_project X 138205719 138206502 + processed_pseudogene processed_pseudogene MGP_AJ_T0097702.1 MGP_AJ_G0036124.1 mouse_genomes_project X 138985987 139099334 - MGP_AJ_P0097702 Gucy2f protein_coding protein_coding MGP_AJ_T0102970.1 MGP_AJ_G0040710.1 mouse_genomes_project X 144623461 144623789 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0097700.1 MGP_AJ_G0036123.1 mouse_genomes_project X 138762382 138764187 - Gm15294 protein_coding translated_processed_pseudogene MGP_AJ_T0097701.1 MGP_AJ_G0036123.1 mouse_genomes_project X 138763456 138763822 - MGP_AJ_P0097701 Gm15294 protein_coding protein_coding MGP_AJ_T0096140.1 MGP_AJ_G0035678.1 mouse_genomes_project X 43563911 43615592 - MGP_AJ_P0096140 Zfp280c protein_coding protein_coding MGP_AJ_T0096141.1 MGP_AJ_G0035678.1 mouse_genomes_project X 43563911 43615220 - MGP_AJ_P0096141 Zfp280c protein_coding protein_coding MGP_AJ_T0096142.1 MGP_AJ_G0035678.1 mouse_genomes_project X 43563912 43618013 - MGP_AJ_P0096142 Zfp280c protein_coding protein_coding MGP_AJ_T0096143.1 MGP_AJ_G0035678.1 mouse_genomes_project X 43563913 43615220 - MGP_AJ_P0096143 Zfp280c protein_coding protein_coding MGP_AJ_T0096144.1 MGP_AJ_G0035678.1 mouse_genomes_project X 43565044 43565991 - Zfp280c protein_coding retained_intron MGP_AJ_T0096145.1 MGP_AJ_G0035678.1 mouse_genomes_project X 43601855 43617293 - Zfp280c protein_coding processed_transcript MGP_AJ_T0096146.1 MGP_AJ_G0035678.1 mouse_genomes_project X 43609555 43627515 - Zfp280c protein_coding processed_transcript MGP_AJ_T0096400.1 MGP_AJ_G0035769.1 mouse_genomes_project X 67728703 67741595 + MGP_AJ_P0096400 Vma21 protein_coding protein_coding MGP_AJ_T0096401.1 MGP_AJ_G0035769.1 mouse_genomes_project X 67729537 67741595 + MGP_AJ_P0096401 Vma21 protein_coding protein_coding MGP_AJ_T0096402.1 MGP_AJ_G0035769.1 mouse_genomes_project X 67729569 67757493 + Vma21 protein_coding processed_transcript MGP_AJ_T0096403.1 MGP_AJ_G0035769.1 mouse_genomes_project X 67729569 67741595 + MGP_AJ_P0096403 Vma21 protein_coding protein_coding MGP_AJ_T0096404.1 MGP_AJ_G0035769.1 mouse_genomes_project X 67729592 67736770 + Vma21 protein_coding processed_transcript MGP_AJ_T0016776.1 MGP_AJ_G0014871.1 mouse_genomes_project X 138759148 138759404 - processed_pseudogene processed_pseudogene MGP_AJ_T0016216.1 MGP_AJ_G0014311.1 mouse_genomes_project X 5894048 5894541 - processed_pseudogene processed_pseudogene MGP_AJ_T0096827.1 MGP_AJ_G0035856.1 mouse_genomes_project X 73616074 73773865 + MGP_AJ_P0096827 Tbl1x protein_coding protein_coding MGP_AJ_T0096828.1 MGP_AJ_G0035856.1 mouse_genomes_project X 73616204 73770626 + Tbl1x protein_coding retained_intron MGP_AJ_T0016287.1 MGP_AJ_G0014382.1 mouse_genomes_project X 34827933 34828503 + processed_pseudogene processed_pseudogene MGP_AJ_T0016246.1 MGP_AJ_G0014341.1 mouse_genomes_project X 12910519 12911339 - processed_pseudogene processed_pseudogene MGP_AJ_T0016904.1 MGP_AJ_G0014999.1 mouse_genomes_project X 164755169 164755712 - processed_pseudogene processed_pseudogene MGP_AJ_T0016479.1 MGP_AJ_G0014574.1 mouse_genomes_project X 81015314 81015626 + processed_pseudogene processed_pseudogene MGP_AJ_T0101645.1 MGP_AJ_G0039611.1 mouse_genomes_project X 132149284 132149398 - snoRNA snoRNA MGP_AJ_T0097196.1 MGP_AJ_G0035958.1 mouse_genomes_project X 98832824 99061606 - MGP_AJ_P0097196 Hdac8 protein_coding protein_coding MGP_AJ_T0097197.1 MGP_AJ_G0035958.1 mouse_genomes_project X 98959563 99061328 - MGP_AJ_P0097197 Hdac8 protein_coding nonsense_mediated_decay MGP_AJ_T0097198.1 MGP_AJ_G0035958.1 mouse_genomes_project X 98961604 99061393 - Hdac8 protein_coding processed_transcript MGP_AJ_T0097199.1 MGP_AJ_G0035958.1 mouse_genomes_project X 98968366 99061592 - Hdac8 protein_coding processed_transcript MGP_AJ_T0097200.1 MGP_AJ_G0035958.1 mouse_genomes_project X 99054298 99060988 - Hdac8 protein_coding retained_intron MGP_AJ_T0097213.1 MGP_AJ_G0035964.1 mouse_genomes_project X 99935494 99976721 + MGP_AJ_P0097213 Chic1 protein_coding protein_coding MGP_AJ_T0016466.1 MGP_AJ_G0014561.1 mouse_genomes_project X 76210250 76210952 - processed_pseudogene processed_pseudogene MGP_AJ_T0016771.1 MGP_AJ_G0014866.1 mouse_genomes_project X 138656668 138657151 + processed_pseudogene processed_pseudogene MGP_AJ_T0016500.1 MGP_AJ_G0014595.1 mouse_genomes_project X 85057569 85057761 + processed_pseudogene processed_pseudogene MGP_AJ_T0095869.1 MGP_AJ_G0035576.1 mouse_genomes_project X 15851869 15856437 + MGP_AJ_P0095869 Timp1 protein_coding protein_coding MGP_AJ_T0095870.1 MGP_AJ_G0035576.1 mouse_genomes_project X 15851924 15856439 + MGP_AJ_P0095870 Timp1 protein_coding protein_coding MGP_AJ_T0101657.1 MGP_AJ_G0039623.1 mouse_genomes_project X 154484494 154484626 - Gm25795 snoRNA snoRNA MGP_AJ_T0005587.1 MGP_AJ_G0004708.1 mouse_genomes_project X 65695047 65906515 - antisense antisense MGP_AJ_T0095716.1 MGP_AJ_G0035530.1 mouse_genomes_project X 3980235 4049444 + MGP_AJ_P0095716 Lancl3 protein_coding protein_coding MGP_AJ_T0016493.1 MGP_AJ_G0014588.1 mouse_genomes_project X 84276083 84276619 - processed_pseudogene processed_pseudogene MGP_AJ_T0096249.1 MGP_AJ_G0035723.1 mouse_genomes_project X 52219635 52285156 + MGP_AJ_P0096249 Fhl1 protein_coding protein_coding MGP_AJ_T0096250.1 MGP_AJ_G0035723.1 mouse_genomes_project X 52219713 52285148 + MGP_AJ_P0096250 Fhl1 protein_coding protein_coding MGP_AJ_T0096251.1 MGP_AJ_G0035723.1 mouse_genomes_project X 52219894 52284045 + MGP_AJ_P0096251 Fhl1 protein_coding protein_coding MGP_AJ_T0096252.1 MGP_AJ_G0035723.1 mouse_genomes_project X 52269629 52285150 + MGP_AJ_P0096252 Fhl1 protein_coding protein_coding MGP_AJ_T0096253.1 MGP_AJ_G0035723.1 mouse_genomes_project X 52269915 52285150 + MGP_AJ_P0096253 Fhl1 protein_coding protein_coding MGP_AJ_T0096254.1 MGP_AJ_G0035723.1 mouse_genomes_project X 52269922 52284398 + MGP_AJ_P0096254 Fhl1 protein_coding protein_coding MGP_AJ_T0096255.1 MGP_AJ_G0035723.1 mouse_genomes_project X 52270011 52281015 + MGP_AJ_P0096255 Fhl1 protein_coding protein_coding MGP_AJ_T0096256.1 MGP_AJ_G0035723.1 mouse_genomes_project X 52278332 52282476 + MGP_AJ_P0096256 Fhl1 protein_coding protein_coding MGP_AJ_T0096257.1 MGP_AJ_G0035723.1 mouse_genomes_project X 52279534 52281065 + MGP_AJ_P0096257 Fhl1 protein_coding protein_coding MGP_AJ_T0096258.1 MGP_AJ_G0035723.1 mouse_genomes_project X 52279807 52281553 + Fhl1 protein_coding processed_transcript MGP_AJ_T0100344.1 MGP_AJ_G0038310.1 mouse_genomes_project X 54758983 54759077 + Gm26487 snRNA snRNA MGP_AJ_T0005574.1 MGP_AJ_G0004697.1 mouse_genomes_project X 31801942 31804297 + Gm14549 antisense antisense MGP_AJ_T0096822.1 MGP_AJ_G0035852.1 mouse_genomes_project X 72410268 72414096 + MGP_AJ_P0096822 protein_coding protein_coding MGP_AJ_T0009454.1 MGP_AJ_G0007578.1 mouse_genomes_project X 164475337 164482461 + Gm15228 lincRNA lincRNA MGP_AJ_T0097364.1 MGP_AJ_G0036013.1 mouse_genomes_project X 109090396 109149487 + MGP_AJ_P0097364 2010106E10Rik protein_coding protein_coding MGP_AJ_T0097365.1 MGP_AJ_G0036013.1 mouse_genomes_project X 109090396 109149497 + MGP_AJ_P0097365 2010106E10Rik protein_coding protein_coding MGP_AJ_T0016742.1 MGP_AJ_G0014837.1 mouse_genomes_project X 133705200 133705658 + processed_pseudogene processed_pseudogene MGP_AJ_T0011778.1 MGP_AJ_G0009900.1 mouse_genomes_project X 136542044 136542368 - Gm24380 misc_RNA misc_RNA MGP_AJ_T0095764.1 MGP_AJ_G0035547.1 mouse_genomes_project X 7602377 7691792 - MGP_AJ_P0095764 Med14 protein_coding protein_coding MGP_AJ_T0095765.1 MGP_AJ_G0035547.1 mouse_genomes_project X 7606043 7644826 - MGP_AJ_P0095765 Med14 protein_coding protein_coding MGP_AJ_T0095766.1 MGP_AJ_G0035547.1 mouse_genomes_project X 7606757 7691792 - Med14 protein_coding retained_intron MGP_AJ_T0095767.1 MGP_AJ_G0035547.1 mouse_genomes_project X 7633971 7642643 - Med14 protein_coding retained_intron MGP_AJ_T0095768.1 MGP_AJ_G0035547.1 mouse_genomes_project X 7636727 7691792 - MGP_AJ_P0095768 Med14 protein_coding protein_coding MGP_AJ_T0101647.1 MGP_AJ_G0039613.1 mouse_genomes_project X 133924055 133924170 - Gm25770 snoRNA snoRNA MGP_AJ_T0100339.1 MGP_AJ_G0038305.1 mouse_genomes_project X 45416718 45416825 + Gm22288 snRNA snRNA MGP_AJ_T0016755.1 MGP_AJ_G0014850.1 mouse_genomes_project X 135584714 135587363 - processed_pseudogene processed_pseudogene MGP_AJ_T0100390.1 MGP_AJ_G0038356.1 mouse_genomes_project X 160084462 160084569 - Gm23901 snRNA snRNA MGP_AJ_T0016261.1 MGP_AJ_G0014356.1 mouse_genomes_project X 15894775 15894974 + processed_pseudogene processed_pseudogene MGP_AJ_T0016588.1 MGP_AJ_G0014683.1 mouse_genomes_project X 99647876 99648082 + processed_pseudogene processed_pseudogene MGP_AJ_T0096958.1 MGP_AJ_G0035900.1 mouse_genomes_project X 91305075 91308299 - MGP_AJ_P0096958 Zxdb protein_coding protein_coding MGP_AJ_T0016358.1 MGP_AJ_G0014453.1 mouse_genomes_project X 54765097 54765773 + processed_pseudogene processed_pseudogene MGP_AJ_T0016846.1 MGP_AJ_G0014941.1 mouse_genomes_project X 152640550 152641120 + processed_pseudogene processed_pseudogene MGP_AJ_T0016534.1 MGP_AJ_G0014629.1 mouse_genomes_project X 90833353 90834054 + processed_pseudogene processed_pseudogene MGP_AJ_T0097388.1 MGP_AJ_G0036021.1 mouse_genomes_project X 112757811 112758158 + MGP_AJ_P0097388 protein_coding protein_coding MGP_AJ_T0097091.1 MGP_AJ_G0035935.1 mouse_genomes_project X 97341290 97558319 - MGP_AJ_P0097091 Tex11 protein_coding protein_coding MGP_AJ_T0097092.1 MGP_AJ_G0035935.1 mouse_genomes_project X 97341290 97558347 - MGP_AJ_P0097092 Tex11 protein_coding protein_coding MGP_AJ_T0097093.1 MGP_AJ_G0035935.1 mouse_genomes_project X 97373775 97558347 - MGP_AJ_P0097093 Tex11 protein_coding protein_coding MGP_AJ_T0095835.1 MGP_AJ_G0035570.1 mouse_genomes_project X 15594886 15627660 + Rbm10 protein_coding processed_transcript MGP_AJ_T0095836.1 MGP_AJ_G0035570.1 mouse_genomes_project X 15594886 15629186 + MGP_AJ_P0095836 Rbm10 protein_coding protein_coding MGP_AJ_T0095837.1 MGP_AJ_G0035570.1 mouse_genomes_project X 15594886 15629186 + MGP_AJ_P0095837 Rbm10 protein_coding protein_coding MGP_AJ_T0101646.1 MGP_AJ_G0039612.1 mouse_genomes_project X 132211916 132212030 - Gm22233 snoRNA snoRNA MGP_AJ_T0016836.1 MGP_AJ_G0014931.1 mouse_genomes_project X 151313109 151313708 - processed_pseudogene processed_pseudogene MGP_AJ_T0097124.1 MGP_AJ_G0035943.1 mouse_genomes_project X 97804198 97830554 + MGP_AJ_P0097124 Nlgn3 protein_coding protein_coding MGP_AJ_T0097125.1 MGP_AJ_G0035943.1 mouse_genomes_project X 97804215 97823611 + MGP_AJ_P0097125 Nlgn3 protein_coding protein_coding MGP_AJ_T0097126.1 MGP_AJ_G0035943.1 mouse_genomes_project X 97804234 97830887 + MGP_AJ_P0097126 Nlgn3 protein_coding protein_coding MGP_AJ_T0097127.1 MGP_AJ_G0035943.1 mouse_genomes_project X 97805403 97807004 + Nlgn3 protein_coding processed_transcript MGP_AJ_T0097128.1 MGP_AJ_G0035943.1 mouse_genomes_project X 97819338 97823087 + Nlgn3 protein_coding processed_transcript MGP_AJ_T0096609.1 MGP_AJ_G0035814.1 mouse_genomes_project X 70158248 70191067 + MGP_AJ_P0096609 Tktl1 protein_coding protein_coding MGP_AJ_T0096610.1 MGP_AJ_G0035814.1 mouse_genomes_project X 70158279 70179535 + MGP_AJ_P0096610 Tktl1 protein_coding nonsense_mediated_decay MGP_AJ_T0016542.1 MGP_AJ_G0014637.1 mouse_genomes_project X 91284096 91284796 - processed_pseudogene processed_pseudogene MGP_AJ_T0011765.1 MGP_AJ_G0009887.1 mouse_genomes_project X 100060706 100060787 + Gm27520 misc_RNA misc_RNA MGP_AJ_T0016392.1 MGP_AJ_G0014487.1 mouse_genomes_project X 61666818 61668946 + processed_pseudogene processed_pseudogene MGP_AJ_T0016543.1 MGP_AJ_G0014638.1 mouse_genomes_project X 91299258 91299888 + processed_pseudogene processed_pseudogene MGP_AJ_T0009395.1 MGP_AJ_G0007540.1 mouse_genomes_project X 68872199 68872721 + Gm14684 lincRNA lincRNA MGP_AJ_T0097005.1 MGP_AJ_G0035913.1 mouse_genomes_project X 93234019 93237087 + Gpr165 protein_coding retained_intron MGP_AJ_T0097006.1 MGP_AJ_G0035913.1 mouse_genomes_project X 93234070 93241168 + MGP_AJ_P0097006 Gpr165 protein_coding protein_coding MGP_AJ_T0097007.1 MGP_AJ_G0035913.1 mouse_genomes_project X 93234091 93236352 + Gpr165 protein_coding retained_intron MGP_AJ_T0097008.1 MGP_AJ_G0035913.1 mouse_genomes_project X 93234763 93241062 + Gpr165 protein_coding retained_intron MGP_AJ_T0011148.1 MGP_AJ_G0009270.1 mouse_genomes_project X 52073007 52073070 - Mir5116 miRNA miRNA MGP_AJ_T0102949.1 MGP_AJ_G0040689.1 mouse_genomes_project X 73849936 73854014 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0097405.1 MGP_AJ_G0036029.1 mouse_genomes_project X 122640995 122647660 - MGP_AJ_P0097405 protein_coding protein_coding MGP_AJ_T0097408.1 MGP_AJ_G0036029.1 mouse_genomes_project X 122643076 122643549 - protein_coding processed_transcript MGP_AJ_T0096567.1 MGP_AJ_G0035809.1 mouse_genomes_project X 69923287 69946831 - MGP_AJ_P0096567 Hcfc1 protein_coding protein_coding MGP_AJ_T0096568.1 MGP_AJ_G0035809.1 mouse_genomes_project X 69923290 69929739 - MGP_AJ_P0096568 Hcfc1 protein_coding protein_coding MGP_AJ_T0096569.1 MGP_AJ_G0035809.1 mouse_genomes_project X 69923292 69946825 - MGP_AJ_P0096569 Hcfc1 protein_coding protein_coding MGP_AJ_T0096570.1 MGP_AJ_G0035809.1 mouse_genomes_project X 69925816 69927921 - Hcfc1 protein_coding retained_intron MGP_AJ_T0096571.1 MGP_AJ_G0035809.1 mouse_genomes_project X 69927683 69928835 - Hcfc1 protein_coding processed_transcript MGP_AJ_T0096572.1 MGP_AJ_G0035809.1 mouse_genomes_project X 69935602 69937911 - Hcfc1 protein_coding processed_transcript MGP_AJ_T0005582.1 MGP_AJ_G0004704.1 mouse_genomes_project X 52718600 52724832 + antisense antisense MGP_AJ_T0016765.1 MGP_AJ_G0014860.1 mouse_genomes_project X 137768445 137769031 - processed_pseudogene processed_pseudogene MGP_AJ_T0098078.1 MGP_AJ_G0036209.1 mouse_genomes_project X 159639410 159794169 - MGP_AJ_P0098078 Reps2 protein_coding protein_coding MGP_AJ_T0098079.1 MGP_AJ_G0036209.1 mouse_genomes_project X 159639410 159874040 - MGP_AJ_P0098079 Reps2 protein_coding protein_coding MGP_AJ_T0098080.1 MGP_AJ_G0036209.1 mouse_genomes_project X 159639410 159874088 - MGP_AJ_P0098080 Reps2 protein_coding protein_coding MGP_AJ_T0098081.1 MGP_AJ_G0036209.1 mouse_genomes_project X 159755021 159794267 - Reps2 protein_coding processed_transcript MGP_AJ_T0098082.1 MGP_AJ_G0036209.1 mouse_genomes_project X 159773703 159780063 - Reps2 protein_coding retained_intron MGP_AJ_T0016770.1 MGP_AJ_G0014865.1 mouse_genomes_project X 138562280 138562580 - processed_pseudogene processed_pseudogene MGP_AJ_T0097588.1 MGP_AJ_G0036088.1 mouse_genomes_project X 133740244 133741296 + MGP_AJ_P0097588 H2bfm protein_coding protein_coding MGP_AJ_T0096117.1 MGP_AJ_G0035671.1 mouse_genomes_project X 43153922 43170567 + MGP_AJ_P0096117 Sash3 protein_coding protein_coding MGP_AJ_T0095873.1 MGP_AJ_G0035578.1 mouse_genomes_project X 15916333 15933535 - MGP_AJ_P0095873 Elk1 protein_coding protein_coding MGP_AJ_T0095874.1 MGP_AJ_G0035578.1 mouse_genomes_project X 15922659 15933535 - Elk1 protein_coding retained_intron MGP_AJ_T0016341.1 MGP_AJ_G0014436.1 mouse_genomes_project X 48412246 48412880 + processed_pseudogene processed_pseudogene MGP_AJ_T0102975.1 MGP_AJ_G0040715.1 mouse_genomes_project X 156291483 156298035 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0097201.1 MGP_AJ_G0035959.1 mouse_genomes_project X 99070938 99203561 - MGP_AJ_P0097201 Phka1 protein_coding protein_coding MGP_AJ_T0097202.1 MGP_AJ_G0035959.1 mouse_genomes_project X 99070945 99203883 - MGP_AJ_P0097202 Phka1 protein_coding protein_coding MGP_AJ_T0097203.1 MGP_AJ_G0035959.1 mouse_genomes_project X 99070945 99203883 - MGP_AJ_P0097203 Phka1 protein_coding protein_coding MGP_AJ_T0097204.1 MGP_AJ_G0035959.1 mouse_genomes_project X 99070945 99203883 - MGP_AJ_P0097204 Phka1 protein_coding protein_coding MGP_AJ_T0097205.1 MGP_AJ_G0035959.1 mouse_genomes_project X 99113117 99203883 - Phka1 protein_coding retained_intron MGP_AJ_T0100373.1 MGP_AJ_G0038339.1 mouse_genomes_project X 123758121 123758226 + Gm22139 snRNA snRNA MGP_AJ_T0016896.1 MGP_AJ_G0014991.1 mouse_genomes_project X 162965207 162965586 + processed_pseudogene processed_pseudogene MGP_AJ_T0098180.1 MGP_AJ_G0036234.1 mouse_genomes_project X 163712978 163731400 + MGP_AJ_P0098180 Trappc2 protein_coding protein_coding MGP_AJ_T0098181.1 MGP_AJ_G0036234.1 mouse_genomes_project X 163713180 163724380 + Trappc2 protein_coding retained_intron MGP_AJ_T0098150.1 MGP_AJ_G0036227.1 mouse_genomes_project X 161699262 161721391 + MGP_AJ_P0098150 Asb11 protein_coding protein_coding MGP_AJ_T0098151.1 MGP_AJ_G0036227.1 mouse_genomes_project X 161699278 161709266 + Asb11 protein_coding retained_intron MGP_AJ_T0098152.1 MGP_AJ_G0036227.1 mouse_genomes_project X 161700326 161721385 + MGP_AJ_P0098152 Asb11 protein_coding protein_coding MGP_AJ_T0097562.1 MGP_AJ_G0036078.1 mouse_genomes_project X 133012343 133014380 + MGP_AJ_P0097562 Wbp5 protein_coding protein_coding MGP_AJ_T0097563.1 MGP_AJ_G0036078.1 mouse_genomes_project X 133012947 133014380 + MGP_AJ_P0097563 Wbp5 protein_coding protein_coding MGP_AJ_T0016310.1 MGP_AJ_G0014405.1 mouse_genomes_project X 39853127 39854097 + processed_pseudogene processed_pseudogene MGP_AJ_T0100358.1 MGP_AJ_G0038324.1 mouse_genomes_project X 97505142 97505206 + Gm27510 snRNA snRNA MGP_AJ_T0095732.1 MGP_AJ_G0035538.1 mouse_genomes_project X 4877492 4956944 - MGP_AJ_P0095732 Srpx protein_coding protein_coding MGP_AJ_T0095733.1 MGP_AJ_G0035538.1 mouse_genomes_project X 4878071 4956971 - MGP_AJ_P0095733 Srpx protein_coding protein_coding MGP_AJ_T0095734.1 MGP_AJ_G0035538.1 mouse_genomes_project X 4878422 4956867 - MGP_AJ_P0095734 Srpx protein_coding protein_coding MGP_AJ_T0095735.1 MGP_AJ_G0035538.1 mouse_genomes_project X 4913158 4956938 - Srpx protein_coding processed_transcript MGP_AJ_T0016675.1 MGP_AJ_G0014770.1 mouse_genomes_project X 113960907 113962000 - processed_pseudogene processed_pseudogene MGP_AJ_T0009411.1 MGP_AJ_G0007554.1 mouse_genomes_project X 100072904 100087987 + Jpx lincRNA lincRNA MGP_AJ_T0009412.1 MGP_AJ_G0007554.1 mouse_genomes_project X 100072904 100073934 + Jpx lincRNA lincRNA MGP_AJ_T0009413.1 MGP_AJ_G0007554.1 mouse_genomes_project X 100073083 100083321 + Jpx lincRNA lincRNA MGP_AJ_T0009414.1 MGP_AJ_G0007554.1 mouse_genomes_project X 100073108 100083042 + Jpx lincRNA lincRNA MGP_AJ_T0097482.1 MGP_AJ_G0036053.1 mouse_genomes_project X 131189067 131201973 - MGP_AJ_P0097482 Gla protein_coding protein_coding MGP_AJ_T0097483.1 MGP_AJ_G0036053.1 mouse_genomes_project X 131196137 131201140 - MGP_AJ_P0097483 Gla protein_coding protein_coding MGP_AJ_T0016462.1 MGP_AJ_G0014557.1 mouse_genomes_project X 74915014 74916122 + processed_pseudogene processed_pseudogene MGP_AJ_T0098066.1 MGP_AJ_G0036205.1 mouse_genomes_project X 158096531 158101466 - MGP_AJ_P0098066 Gja6 protein_coding protein_coding MGP_AJ_T0016351.1 MGP_AJ_G0014446.1 mouse_genomes_project X 53271034 53273043 - processed_pseudogene processed_pseudogene MGP_AJ_T0016502.1 MGP_AJ_G0014597.1 mouse_genomes_project X 85326596 85327001 + processed_pseudogene processed_pseudogene MGP_AJ_T0016219.1 MGP_AJ_G0014314.1 mouse_genomes_project X 6583294 6583417 - processed_pseudogene processed_pseudogene MGP_AJ_T0101619.1 MGP_AJ_G0039585.1 mouse_genomes_project X 70254789 70254926 + Snora70 snoRNA snoRNA MGP_AJ_T0016421.1 MGP_AJ_G0014516.1 mouse_genomes_project X 67639810 67640025 + processed_pseudogene processed_pseudogene MGP_AJ_T0018668.1 MGP_AJ_G0015766.1 mouse_genomes_project X 131299321 131301222 - B230119M05Rik processed_transcript processed_transcript MGP_AJ_T0098126.1 MGP_AJ_G0036220.1 mouse_genomes_project X 161313279 161323039 - MGP_AJ_P0098126 Siah1b protein_coding protein_coding MGP_AJ_T0098127.1 MGP_AJ_G0036220.1 mouse_genomes_project X 161313279 161323068 - MGP_AJ_P0098127 Siah1b protein_coding protein_coding MGP_AJ_T0098128.1 MGP_AJ_G0036220.1 mouse_genomes_project X 161314452 161323411 - MGP_AJ_P0098128 Siah1b protein_coding protein_coding MGP_AJ_T0097912.1 MGP_AJ_G0036161.1 mouse_genomes_project X 149289238 149294812 - Tspyl2 protein_coding retained_intron MGP_AJ_T0097913.1 MGP_AJ_G0036161.1 mouse_genomes_project X 149289238 149294812 - Tspyl2 protein_coding retained_intron MGP_AJ_T0097914.1 MGP_AJ_G0036161.1 mouse_genomes_project X 149289241 149294812 - MGP_AJ_P0097914 Tspyl2 protein_coding protein_coding MGP_AJ_T0097915.1 MGP_AJ_G0036161.1 mouse_genomes_project X 149291687 149294231 - MGP_AJ_P0097915 Tspyl2 protein_coding nonsense_mediated_decay MGP_AJ_T0097916.1 MGP_AJ_G0036161.1 mouse_genomes_project X 149292651 149294188 - Tspyl2 protein_coding retained_intron MGP_AJ_T0096198.1 MGP_AJ_G0035696.1 mouse_genomes_project X 46790925 46840427 - MGP_AJ_P0096198 Usp26 protein_coding protein_coding MGP_AJ_T0096199.1 MGP_AJ_G0035696.1 mouse_genomes_project X 46790925 46840338 - MGP_AJ_P0096199 Usp26 protein_coding protein_coding MGP_AJ_T0011170.1 MGP_AJ_G0009292.1 mouse_genomes_project X 63729118 63729184 - Mir201 miRNA miRNA MGP_AJ_T0016849.1 MGP_AJ_G0014944.1 mouse_genomes_project X 153846914 153847383 - processed_pseudogene processed_pseudogene MGP_AJ_T0097789.1 MGP_AJ_G0036145.1 mouse_genomes_project X 147480709 147504972 + MGP_AJ_P0097789 Alas2 protein_coding protein_coding MGP_AJ_T0097790.1 MGP_AJ_G0036145.1 mouse_genomes_project X 147480793 147504956 + MGP_AJ_P0097790 Alas2 protein_coding protein_coding MGP_AJ_T0097791.1 MGP_AJ_G0036145.1 mouse_genomes_project X 147487371 147491997 + Alas2 protein_coding retained_intron MGP_AJ_T0097792.1 MGP_AJ_G0036145.1 mouse_genomes_project X 147500723 147504956 + Alas2 protein_coding processed_transcript MGP_AJ_T0016413.1 MGP_AJ_G0014508.1 mouse_genomes_project X 66206358 66206883 - processed_pseudogene processed_pseudogene MGP_AJ_T0016831.1 MGP_AJ_G0014926.1 mouse_genomes_project X 150217646 150217920 + processed_pseudogene processed_pseudogene MGP_AJ_T0102934.1 MGP_AJ_G0040674.1 mouse_genomes_project X 30785722 30816159 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0096010.1 MGP_AJ_G0035645.1 mouse_genomes_project X 33126630 33135335 + MGP_AJ_P0096010 Rhox13 protein_coding protein_coding MGP_AJ_T0011221.1 MGP_AJ_G0009343.1 mouse_genomes_project X 148802041 148802117 + Mir3113 miRNA miRNA MGP_AJ_T0096899.1 MGP_AJ_G0035881.1 mouse_genomes_project X 86072837 86076061 + MGP_AJ_P0096899 4932429P05Rik protein_coding protein_coding MGP_AJ_T0016484.1 MGP_AJ_G0014579.1 mouse_genomes_project X 81980809 81981177 + processed_pseudogene processed_pseudogene MGP_AJ_T0102947.1 MGP_AJ_G0040687.1 mouse_genomes_project X 71528299 71557807 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0096976.1 MGP_AJ_G0035904.1 mouse_genomes_project X 92030510 92038369 - MGP_AJ_P0096976 Asb12 protein_coding protein_coding MGP_AJ_T0101649.1 MGP_AJ_G0039615.1 mouse_genomes_project X 139392510 139392636 - Gm25915 snoRNA snoRNA MGP_AJ_T0095883.1 MGP_AJ_G0035580.1 mouse_genomes_project X 16021159 16057870 - MGP_AJ_P0095883 Zfp182 protein_coding protein_coding MGP_AJ_T0095884.1 MGP_AJ_G0035580.1 mouse_genomes_project X 16021163 16057919 - MGP_AJ_P0095884 Zfp182 protein_coding protein_coding MGP_AJ_T0095885.1 MGP_AJ_G0035580.1 mouse_genomes_project X 16021809 16057853 - MGP_AJ_P0095885 Zfp182 protein_coding protein_coding MGP_AJ_T0095886.1 MGP_AJ_G0035580.1 mouse_genomes_project X 16023809 16058183 - Zfp182 protein_coding processed_transcript MGP_AJ_T0095887.1 MGP_AJ_G0035580.1 mouse_genomes_project X 16053544 16057910 - Zfp182 protein_coding processed_transcript MGP_AJ_T0011159.1 MGP_AJ_G0009281.1 mouse_genomes_project X 62544903 62544974 - Mir741 miRNA miRNA MGP_AJ_T0097055.1 MGP_AJ_G0035924.1 mouse_genomes_project X 96892106 96901828 - MGP_AJ_P0097055 Awat2 protein_coding protein_coding MGP_AJ_T0096829.1 MGP_AJ_G0035857.1 mouse_genomes_project X 73876671 73912974 - MGP_AJ_P0096829 Prkx protein_coding protein_coding MGP_AJ_T0096830.1 MGP_AJ_G0035857.1 mouse_genomes_project X 73886938 73911397 - MGP_AJ_P0096830 Prkx protein_coding protein_coding MGP_AJ_T0097110.1 MGP_AJ_G0035940.1 mouse_genomes_project X 97766569 97774352 - MGP_AJ_P0097110 Gm20489 protein_coding protein_coding MGP_AJ_T0097998.1 MGP_AJ_G0036192.1 mouse_genomes_project X 155027525 155255340 - MGP_AJ_P0097998 Cnksr2 protein_coding protein_coding MGP_AJ_T0097999.1 MGP_AJ_G0036192.1 mouse_genomes_project X 155039785 155255340 - MGP_AJ_P0097999 Cnksr2 protein_coding protein_coding MGP_AJ_T0098000.1 MGP_AJ_G0036192.1 mouse_genomes_project X 155065688 155073756 - Cnksr2 protein_coding retained_intron MGP_AJ_T0009375.1 MGP_AJ_G0007526.1 mouse_genomes_project X 16214495 16231486 - 4930453H23Rik lincRNA lincRNA MGP_AJ_T0009376.1 MGP_AJ_G0007526.1 mouse_genomes_project X 16214972 16215230 - 4930453H23Rik lincRNA lincRNA MGP_AJ_T0009377.1 MGP_AJ_G0007526.1 mouse_genomes_project X 16227110 16231405 - 4930453H23Rik lincRNA lincRNA MGP_AJ_T0016314.1 MGP_AJ_G0014409.1 mouse_genomes_project X 40776438 40776673 - processed_pseudogene processed_pseudogene MGP_AJ_T0095724.1 MGP_AJ_G0035534.1 mouse_genomes_project X 4490097 4499188 - MGP_AJ_P0095724 Dynlt3 protein_coding protein_coding MGP_AJ_T0095725.1 MGP_AJ_G0035534.1 mouse_genomes_project X 4492293 4495815 - Dynlt3 protein_coding processed_transcript MGP_AJ_T0095726.1 MGP_AJ_G0035534.1 mouse_genomes_project X 4492560 4499188 - Dynlt3 protein_coding processed_transcript MGP_AJ_T0095727.1 MGP_AJ_G0035534.1 mouse_genomes_project X 4492622 4493642 - Dynlt3 protein_coding processed_transcript MGP_AJ_T0011215.1 MGP_AJ_G0009337.1 mouse_genomes_project X 143892067 143892154 + Mir1912 miRNA miRNA MGP_AJ_T0016353.1 MGP_AJ_G0014448.1 mouse_genomes_project X 53289724 53290318 - processed_pseudogene processed_pseudogene MGP_AJ_T0095801.1 MGP_AJ_G0035556.1 mouse_genomes_project X 11569355 11631915 + MGP_AJ_P0095801 Maoa protein_coding protein_coding MGP_AJ_T0101660.1 MGP_AJ_G0039626.1 mouse_genomes_project X 159981824 159981945 + Gm23786 snoRNA snoRNA MGP_AJ_T0097229.1 MGP_AJ_G0035973.1 mouse_genomes_project X 101121412 101258680 - MGP_AJ_P0097229 Zdhhc15 protein_coding protein_coding MGP_AJ_T0097399.1 MGP_AJ_G0036027.1 mouse_genomes_project X 116801633 116801981 - MGP_AJ_P0097399 H2afb3 protein_coding protein_coding MGP_AJ_T0095641.1 MGP_AJ_G0035508.1 mouse_genomes_project X 2483353 2492123 + MGP_AJ_P0095641 Timm17b protein_coding protein_coding MGP_AJ_T0095642.1 MGP_AJ_G0035508.1 mouse_genomes_project X 2483667 2490131 + MGP_AJ_P0095642 Timm17b protein_coding protein_coding MGP_AJ_T0095643.1 MGP_AJ_G0035508.1 mouse_genomes_project X 2489914 2490771 + Timm17b protein_coding retained_intron MGP_AJ_T0016248.1 MGP_AJ_G0014343.1 mouse_genomes_project X 13931688 13932094 + processed_pseudogene processed_pseudogene MGP_AJ_T0098773.1 MGP_AJ_G0036757.1 mouse_genomes_project X 79464531 79464648 + n-R5s9 rRNA rRNA MGP_AJ_T0016515.1 MGP_AJ_G0014610.1 mouse_genomes_project X 87984621 87985009 - processed_pseudogene processed_pseudogene MGP_AJ_T0016230.1 MGP_AJ_G0014325.1 mouse_genomes_project X 8176770 8177997 + processed_pseudogene processed_pseudogene MGP_AJ_T0098112.1 MGP_AJ_G0036217.1 mouse_genomes_project X 161155513 161180121 + MGP_AJ_P0098112 Ap1s2 protein_coding protein_coding MGP_AJ_T0098113.1 MGP_AJ_G0036217.1 mouse_genomes_project X 161155638 161179814 + MGP_AJ_P0098113 Ap1s2 protein_coding protein_coding MGP_AJ_T0098114.1 MGP_AJ_G0036217.1 mouse_genomes_project X 161155641 161176001 + MGP_AJ_P0098114 Ap1s2 protein_coding protein_coding MGP_AJ_T0098115.1 MGP_AJ_G0036217.1 mouse_genomes_project X 161157897 161179811 + MGP_AJ_P0098115 Ap1s2 protein_coding protein_coding MGP_AJ_T0096410.1 MGP_AJ_G0035772.1 mouse_genomes_project X 67898670 67915338 + MGP_AJ_P0096410 Fate1 protein_coding protein_coding MGP_AJ_T0096411.1 MGP_AJ_G0035772.1 mouse_genomes_project X 67907855 67915338 + MGP_AJ_P0096411 Fate1 protein_coding protein_coding MGP_AJ_T0096412.1 MGP_AJ_G0035772.1 mouse_genomes_project X 67909496 67915060 + Fate1 protein_coding processed_transcript MGP_AJ_T0095894.1 MGP_AJ_G0035584.1 mouse_genomes_project X 16173863 16175078 - MGP_AJ_P0095894 Gm21876 protein_coding protein_coding MGP_AJ_T0016594.1 MGP_AJ_G0014689.1 mouse_genomes_project X 99885129 99885584 + processed_pseudogene processed_pseudogene MGP_AJ_T0016806.1 MGP_AJ_G0014901.1 mouse_genomes_project X 142929257 142929624 + processed_pseudogene processed_pseudogene MGP_AJ_T0100351.1 MGP_AJ_G0038317.1 mouse_genomes_project X 71655563 71655727 - Gm25421 snRNA snRNA MGP_AJ_T0016557.1 MGP_AJ_G0014652.1 mouse_genomes_project X 93692345 93693621 - processed_pseudogene processed_pseudogene MGP_AJ_T0096214.1 MGP_AJ_G0035704.1 mouse_genomes_project X 48338590 48364962 - MGP_AJ_P0096214 Fam122b protein_coding protein_coding MGP_AJ_T0096215.1 MGP_AJ_G0035704.1 mouse_genomes_project X 48338600 48364176 - MGP_AJ_P0096215 Fam122b protein_coding protein_coding MGP_AJ_T0096216.1 MGP_AJ_G0035704.1 mouse_genomes_project X 48338921 48364955 - MGP_AJ_P0096216 Fam122b protein_coding protein_coding MGP_AJ_T0096217.1 MGP_AJ_G0035704.1 mouse_genomes_project X 48340037 48364962 - Fam122b protein_coding processed_transcript MGP_AJ_T0097386.1 MGP_AJ_G0036019.1 mouse_genomes_project X 111436036 111436757 + MGP_AJ_P0097386 Ube2dnl1 protein_coding protein_coding MGP_AJ_T0096756.1 MGP_AJ_G0035835.1 mouse_genomes_project X 70734260 70742575 + MGP_AJ_P0096756 protein_coding protein_coding MGP_AJ_T0016489.1 MGP_AJ_G0014584.1 mouse_genomes_project X 82465856 82467573 + processed_pseudogene processed_pseudogene MGP_AJ_T0018667.1 MGP_AJ_G0015765.1 mouse_genomes_project X 130471581 130474073 - 4930570D08Rik processed_transcript processed_transcript MGP_AJ_T0016631.1 MGP_AJ_G0014726.1 mouse_genomes_project X 104075358 104075673 - processed_pseudogene processed_pseudogene MGP_AJ_T0009445.1 MGP_AJ_G0007571.1 mouse_genomes_project X 159030429 159032283 - Scml1 lincRNA lincRNA MGP_AJ_T0097528.1 MGP_AJ_G0036068.1 mouse_genomes_project X 132479033 132483623 + MGP_AJ_P0097528 Armcx5 protein_coding protein_coding MGP_AJ_T0097533.1 MGP_AJ_G0036068.1 mouse_genomes_project X 132479035 132481707 + Armcx5 protein_coding retained_intron MGP_AJ_T0016648.1 MGP_AJ_G0014743.1 mouse_genomes_project X 109064800 109066597 + processed_pseudogene processed_pseudogene MGP_AJ_T0016531.1 MGP_AJ_G0014626.1 mouse_genomes_project X 90814484 90815432 + processed_pseudogene processed_pseudogene MGP_AJ_T0097631.1 MGP_AJ_G0036101.1 mouse_genomes_project X 136206104 136210990 + MGP_AJ_P0097631 Trap1a protein_coding protein_coding MGP_AJ_T0011755.1 MGP_AJ_G0009877.1 mouse_genomes_project X 45021668 45021963 + Gm23385 misc_RNA misc_RNA MGP_AJ_T0005589.1 MGP_AJ_G0004710.1 mouse_genomes_project X 69361381 69371395 - Gm26726 antisense antisense MGP_AJ_T0011146.1 MGP_AJ_G0009268.1 mouse_genomes_project X 48146549 48146620 - Mir503 miRNA miRNA MGP_AJ_T0097622.1 MGP_AJ_G0036099.1 mouse_genomes_project X 136039599 136041381 + MGP_AJ_P0097622 4933428M09Rik protein_coding protein_coding MGP_AJ_T0011222.1 MGP_AJ_G0009344.1 mouse_genomes_project X 148857950 148858033 + Mirlet7f-2 miRNA miRNA MGP_AJ_T0016538.1 MGP_AJ_G0014633.1 mouse_genomes_project X 91108887 91109365 - processed_pseudogene processed_pseudogene MGP_AJ_T0016638.1 MGP_AJ_G0014733.1 mouse_genomes_project X 106628480 106630032 + processed_pseudogene processed_pseudogene MGP_AJ_T0016726.1 MGP_AJ_G0014821.1 mouse_genomes_project X 130625188 130626817 - processed_pseudogene processed_pseudogene MGP_AJ_T0095516.1 MGP_AJ_G0035486.1 mouse_genomes_project X 1625294 1635930 + MGP_AJ_P0095516 Akap4 protein_coding protein_coding MGP_AJ_T0095517.1 MGP_AJ_G0035486.1 mouse_genomes_project X 1625295 1635925 + MGP_AJ_P0095517 Akap4 protein_coding protein_coding MGP_AJ_T0095518.1 MGP_AJ_G0035486.1 mouse_genomes_project X 1625988 1635912 + MGP_AJ_P0095518 Akap4 protein_coding protein_coding MGP_AJ_T0016253.1 MGP_AJ_G0014348.1 mouse_genomes_project X 14881231 14881447 + processed_pseudogene processed_pseudogene MGP_AJ_T0009422.1 MGP_AJ_G0007557.1 mouse_genomes_project X 101923446 101971068 - 5330434G04Rik lincRNA lincRNA MGP_AJ_T0009423.1 MGP_AJ_G0007557.1 mouse_genomes_project X 101925524 101971068 - 5330434G04Rik lincRNA lincRNA MGP_AJ_T0009424.1 MGP_AJ_G0007557.1 mouse_genomes_project X 101951555 101971046 - 5330434G04Rik lincRNA lincRNA MGP_AJ_T0009425.1 MGP_AJ_G0007557.1 mouse_genomes_project X 101954223 101967206 - 5330434G04Rik lincRNA lincRNA MGP_AJ_T0101621.1 MGP_AJ_G0039587.1 mouse_genomes_project X 71138241 71138359 + Gm25520 snoRNA snoRNA MGP_AJ_T0018609.1 MGP_AJ_G0015751.1 mouse_genomes_project X 14176517 14186757 - Gm14636 processed_transcript processed_transcript MGP_AJ_T0018610.1 MGP_AJ_G0015751.1 mouse_genomes_project X 14181592 14186766 - Gm14636 processed_transcript processed_transcript MGP_AJ_T0097565.1 MGP_AJ_G0036080.1 mouse_genomes_project X 133381918 133469712 + MGP_AJ_P0097565 protein_coding protein_coding MGP_AJ_T0097566.1 MGP_AJ_G0036080.1 mouse_genomes_project X 133381920 133469568 + MGP_AJ_P0097566 protein_coding protein_coding MGP_AJ_T0097567.1 MGP_AJ_G0036080.1 mouse_genomes_project X 133381924 133452377 + protein_coding processed_transcript MGP_AJ_T0097568.1 MGP_AJ_G0036080.1 mouse_genomes_project X 133381931 133452940 + protein_coding processed_transcript MGP_AJ_T0097569.1 MGP_AJ_G0036080.1 mouse_genomes_project X 133468400 133470397 + MGP_AJ_P0097569 protein_coding protein_coding MGP_AJ_T0097572.1 MGP_AJ_G0036080.1 mouse_genomes_project X 133468428 133470393 + MGP_AJ_P0097572 protein_coding protein_coding MGP_AJ_T0097573.1 MGP_AJ_G0036080.1 mouse_genomes_project X 133468636 133469992 + MGP_AJ_P0097573 protein_coding protein_coding MGP_AJ_T0097933.1 MGP_AJ_G0036169.1 mouse_genomes_project X 150128751 150163629 + MGP_AJ_P0097933 Rragb protein_coding protein_coding MGP_AJ_T0097934.1 MGP_AJ_G0036169.1 mouse_genomes_project X 150128757 150143791 + MGP_AJ_P0097934 Rragb protein_coding protein_coding MGP_AJ_T0005584.1 MGP_AJ_G0004706.1 mouse_genomes_project X 56485839 56490160 + Gm14662 antisense antisense MGP_AJ_T0016882.1 MGP_AJ_G0014977.1 mouse_genomes_project X 159907001 159907456 + processed_pseudogene processed_pseudogene MGP_AJ_T0009437.1 MGP_AJ_G0007569.1 mouse_genomes_project X 149251594 149277575 - Kantr lincRNA lincRNA MGP_AJ_T0009438.1 MGP_AJ_G0007569.1 mouse_genomes_project X 149251746 149277575 - Kantr lincRNA lincRNA MGP_AJ_T0009439.1 MGP_AJ_G0007569.1 mouse_genomes_project X 149251746 149277575 - Kantr lincRNA lincRNA MGP_AJ_T0009440.1 MGP_AJ_G0007569.1 mouse_genomes_project X 149251823 149277543 - Kantr lincRNA lincRNA MGP_AJ_T0009441.1 MGP_AJ_G0007569.1 mouse_genomes_project X 149265413 149268104 - Kantr lincRNA lincRNA MGP_AJ_T0009442.1 MGP_AJ_G0007569.1 mouse_genomes_project X 149265509 149277550 - Kantr lincRNA lincRNA MGP_AJ_T0009443.1 MGP_AJ_G0007569.1 mouse_genomes_project X 149269889 149277550 - Kantr lincRNA lincRNA MGP_AJ_T0016766.1 MGP_AJ_G0014861.1 mouse_genomes_project X 138150246 138150607 - processed_pseudogene processed_pseudogene MGP_AJ_T0016276.1 MGP_AJ_G0014371.1 mouse_genomes_project X 31377168 31377462 + processed_pseudogene processed_pseudogene MGP_AJ_T0005598.1 MGP_AJ_G0004718.1 mouse_genomes_project X 95941991 95943720 + Gm14808 antisense antisense MGP_AJ_T0016828.1 MGP_AJ_G0014923.1 mouse_genomes_project X 149518423 149519331 - processed_pseudogene processed_pseudogene MGP_AJ_T0096320.1 MGP_AJ_G0035744.1 mouse_genomes_project X 57893897 57902819 + MGP_AJ_P0096320 4933402E13Rik protein_coding protein_coding MGP_AJ_T0096321.1 MGP_AJ_G0035744.1 mouse_genomes_project X 57897794 57902819 + MGP_AJ_P0096321 4933402E13Rik protein_coding protein_coding MGP_AJ_T0097575.1 MGP_AJ_G0036084.1 mouse_genomes_project X 133537179 133546124 - MGP_AJ_P0097575 protein_coding protein_coding MGP_AJ_T0097576.1 MGP_AJ_G0036084.1 mouse_genomes_project X 133538734 133547780 - MGP_AJ_P0097576 protein_coding protein_coding MGP_AJ_T0097577.1 MGP_AJ_G0036084.1 mouse_genomes_project X 133538760 133545307 - MGP_AJ_P0097577 protein_coding protein_coding MGP_AJ_T0097578.1 MGP_AJ_G0036084.1 mouse_genomes_project X 133538762 133547809 - MGP_AJ_P0097578 protein_coding protein_coding MGP_AJ_T0097579.1 MGP_AJ_G0036084.1 mouse_genomes_project X 133538890 133545303 - MGP_AJ_P0097579 protein_coding protein_coding MGP_AJ_T0097580.1 MGP_AJ_G0036084.1 mouse_genomes_project X 133540058 133546096 - protein_coding processed_transcript MGP_AJ_T0095820.1 MGP_AJ_G0035565.1 mouse_genomes_project X 15089324 15268741 - MGP_AJ_P0095820 Slc9a7 protein_coding protein_coding MGP_AJ_T0095821.1 MGP_AJ_G0035565.1 mouse_genomes_project X 15103646 15268720 - Slc9a7 protein_coding retained_intron MGP_AJ_T0095822.1 MGP_AJ_G0035565.1 mouse_genomes_project X 15134545 15268704 - MGP_AJ_P0095822 Slc9a7 protein_coding protein_coding MGP_AJ_T0095823.1 MGP_AJ_G0035565.1 mouse_genomes_project X 15145337 15268741 - Slc9a7 protein_coding retained_intron MGP_AJ_T0097926.1 MGP_AJ_G0036165.1 mouse_genomes_project X 149774426 149788009 + Gpr143 protein_coding processed_transcript MGP_AJ_T0097927.1 MGP_AJ_G0036165.1 mouse_genomes_project X 149774491 149801207 + MGP_AJ_P0097927 Gpr143 protein_coding protein_coding MGP_AJ_T0097928.1 MGP_AJ_G0036165.1 mouse_genomes_project X 149774523 149783387 + Gpr143 protein_coding retained_intron MGP_AJ_T0016345.1 MGP_AJ_G0014440.1 mouse_genomes_project X 48940679 48940973 + processed_pseudogene processed_pseudogene MGP_AJ_T0011147.1 MGP_AJ_G0009269.1 mouse_genomes_project X 48146820 48146915 - Mir322 miRNA miRNA MGP_AJ_T0097558.1 MGP_AJ_G0036076.1 mouse_genomes_project X 132981493 132982969 - MGP_AJ_P0097558 Bex1 protein_coding protein_coding MGP_AJ_T0097559.1 MGP_AJ_G0036076.1 mouse_genomes_project X 132982065 132982902 - Bex1 protein_coding retained_intron MGP_AJ_T0009430.1 MGP_AJ_G0007562.1 mouse_genomes_project X 125585341 125588191 + 4930558G05Rik lincRNA lincRNA MGP_AJ_T0100395.1 MGP_AJ_G0038361.1 mouse_genomes_project X 165919395 165919507 - Gm23197 snRNA snRNA MGP_AJ_T0016711.1 MGP_AJ_G0014806.1 mouse_genomes_project X 126901736 126902996 - processed_pseudogene processed_pseudogene MGP_AJ_T0097863.1 MGP_AJ_G0036155.1 mouse_genomes_project X 148744013 148747370 + Huwe1 protein_coding processed_transcript MGP_AJ_T0097864.1 MGP_AJ_G0036155.1 mouse_genomes_project X 148744013 148745122 + Huwe1 protein_coding processed_transcript MGP_AJ_T0097865.1 MGP_AJ_G0036155.1 mouse_genomes_project X 148744173 148749719 + Huwe1 protein_coding processed_transcript MGP_AJ_T0097866.1 MGP_AJ_G0036155.1 mouse_genomes_project X 148746101 148818342 + MGP_AJ_P0097866 Huwe1 protein_coding nonsense_mediated_decay MGP_AJ_T0097867.1 MGP_AJ_G0036155.1 mouse_genomes_project X 148746119 148749719 + Huwe1 protein_coding processed_transcript MGP_AJ_T0097868.1 MGP_AJ_G0036155.1 mouse_genomes_project X 148746180 148880853 + MGP_AJ_P0097868 Huwe1 protein_coding unknown_likely_coding MGP_AJ_T0097869.1 MGP_AJ_G0036155.1 mouse_genomes_project X 148746185 148795685 + Huwe1 protein_coding retained_intron MGP_AJ_T0097870.1 MGP_AJ_G0036155.1 mouse_genomes_project X 148746185 148880851 + MGP_AJ_P0097870 Huwe1 protein_coding protein_coding MGP_AJ_T0097871.1 MGP_AJ_G0036155.1 mouse_genomes_project X 148746205 148803026 + Huwe1 protein_coding retained_intron MGP_AJ_T0097872.1 MGP_AJ_G0036155.1 mouse_genomes_project X 148746205 148818859 + Huwe1 protein_coding retained_intron MGP_AJ_T0097873.1 MGP_AJ_G0036155.1 mouse_genomes_project X 148746516 148777773 + MGP_AJ_P0097873 Huwe1 protein_coding protein_coding MGP_AJ_T0097874.1 MGP_AJ_G0036155.1 mouse_genomes_project X 148746520 148790072 + Huwe1 protein_coding processed_transcript MGP_AJ_T0097875.1 MGP_AJ_G0036155.1 mouse_genomes_project X 148746520 148817566 + Huwe1 protein_coding retained_intron MGP_AJ_T0097876.1 MGP_AJ_G0036155.1 mouse_genomes_project X 148746520 148782599 + MGP_AJ_P0097876 Huwe1 protein_coding nonsense_mediated_decay MGP_AJ_T0097877.1 MGP_AJ_G0036155.1 mouse_genomes_project X 148777744 148880851 + MGP_AJ_P0097877 Huwe1 protein_coding protein_coding MGP_AJ_T0097878.1 MGP_AJ_G0036155.1 mouse_genomes_project X 148802646 148836591 + MGP_AJ_P0097878 Huwe1 protein_coding nonsense_mediated_decay MGP_AJ_T0097879.1 MGP_AJ_G0036155.1 mouse_genomes_project X 148809963 148819213 + MGP_AJ_P0097879 Huwe1 protein_coding nonsense_mediated_decay MGP_AJ_T0097880.1 MGP_AJ_G0036155.1 mouse_genomes_project X 148828014 148828730 + Huwe1 protein_coding processed_transcript MGP_AJ_T0097881.1 MGP_AJ_G0036155.1 mouse_genomes_project X 148850609 148855533 + Huwe1 protein_coding retained_intron MGP_AJ_T0097882.1 MGP_AJ_G0036155.1 mouse_genomes_project X 148854460 148856005 + Huwe1 protein_coding retained_intron MGP_AJ_T0097883.1 MGP_AJ_G0036155.1 mouse_genomes_project X 148854460 148855808 + Huwe1 protein_coding retained_intron MGP_AJ_T0097884.1 MGP_AJ_G0036155.1 mouse_genomes_project X 148866859 148868190 + Huwe1 protein_coding retained_intron MGP_AJ_T0097885.1 MGP_AJ_G0036155.1 mouse_genomes_project X 148866920 148869311 + Huwe1 protein_coding retained_intron MGP_AJ_T0097886.1 MGP_AJ_G0036155.1 mouse_genomes_project X 148869835 148873320 + Huwe1 protein_coding retained_intron MGP_AJ_T0097707.1 MGP_AJ_G0036127.1 mouse_genomes_project X 139217726 139294061 - MGP_AJ_P0097707 Acsl4 protein_coding protein_coding MGP_AJ_T0097708.1 MGP_AJ_G0036127.1 mouse_genomes_project X 139220403 139227773 - Acsl4 protein_coding processed_transcript MGP_AJ_T0097709.1 MGP_AJ_G0036127.1 mouse_genomes_project X 139220409 139294058 - MGP_AJ_P0097709 Acsl4 protein_coding protein_coding MGP_AJ_T0097891.1 MGP_AJ_G0036157.1 mouse_genomes_project X 148949458 148961089 - MGP_AJ_P0097891 Ribc1 protein_coding protein_coding MGP_AJ_T0097892.1 MGP_AJ_G0036157.1 mouse_genomes_project X 148954387 148961064 - Ribc1 protein_coding processed_transcript MGP_AJ_T0096005.1 MGP_AJ_G0035642.1 mouse_genomes_project X 33068392 33073608 + MGP_AJ_P0096005 Rhox10 protein_coding protein_coding MGP_AJ_T0011214.1 MGP_AJ_G0009336.1 mouse_genomes_project X 143884750 143884858 + Mir764 miRNA miRNA MGP_AJ_T0016697.1 MGP_AJ_G0014792.1 mouse_genomes_project X 118573992 118575549 + processed_pseudogene processed_pseudogene MGP_AJ_T0016898.1 MGP_AJ_G0014993.1 mouse_genomes_project X 163328346 163331589 + processed_pseudogene processed_pseudogene MGP_AJ_T0016511.1 MGP_AJ_G0014606.1 mouse_genomes_project X 87054426 87055055 - processed_pseudogene processed_pseudogene MGP_AJ_T0016841.1 MGP_AJ_G0014936.1 mouse_genomes_project X 152320577 152322241 + processed_pseudogene processed_pseudogene MGP_AJ_T0097953.1 MGP_AJ_G0036180.1 mouse_genomes_project X 152181492 152248964 - MGP_AJ_P0097953 protein_coding protein_coding MGP_AJ_T0097683.1 MGP_AJ_G0036115.1 mouse_genomes_project X 137754326 137759941 - MGP_AJ_P0097683 Tex13 protein_coding protein_coding MGP_AJ_T0097684.1 MGP_AJ_G0036115.1 mouse_genomes_project X 137755774 137757360 - Tex13 protein_coding retained_intron MGP_AJ_T0011111.1 MGP_AJ_G0009233.1 mouse_genomes_project X 1799812 1799904 - Mir500 miRNA miRNA MGP_AJ_T0097552.1 MGP_AJ_G0036074.1 mouse_genomes_project X 132831826 132844648 - MGP_AJ_P0097552 Nxf3 protein_coding protein_coding MGP_AJ_T0097553.1 MGP_AJ_G0036074.1 mouse_genomes_project X 132839340 132844635 - MGP_AJ_P0097553 Nxf3 protein_coding protein_coding MGP_AJ_T0097061.1 MGP_AJ_G0035928.1 mouse_genomes_project X 97072127 97078083 + MGP_AJ_P0097061 Awat1 protein_coding protein_coding MGP_AJ_T0097984.1 MGP_AJ_G0036189.1 mouse_genomes_project X 154781189 154784056 - MGP_AJ_P0097984 Yy2 protein_coding protein_coding MGP_AJ_T0095993.1 MGP_AJ_G0035634.1 mouse_genomes_project X 32735845 32739977 - MGP_AJ_P0095993 Rhox2d protein_coding protein_coding MGP_AJ_T0016746.1 MGP_AJ_G0014841.1 mouse_genomes_project X 133940642 133952682 + processed_pseudogene processed_pseudogene MGP_AJ_T0095817.1 MGP_AJ_G0035563.1 mouse_genomes_project X 13437215 13483412 - 4930578C19Rik protein_coding processed_transcript MGP_AJ_T0095818.1 MGP_AJ_G0035563.1 mouse_genomes_project X 13440761 13483386 - MGP_AJ_P0095818 4930578C19Rik protein_coding protein_coding MGP_AJ_T0098219.1 MGP_AJ_G0036246.1 mouse_genomes_project X 166508733 166520237 - MGP_AJ_P0098219 Amelx protein_coding protein_coding MGP_AJ_T0098220.1 MGP_AJ_G0036246.1 mouse_genomes_project X 166513006 166520237 - Amelx protein_coding processed_transcript MGP_AJ_T0098221.1 MGP_AJ_G0036246.1 mouse_genomes_project X 166513006 166520237 - MGP_AJ_P0098221 Amelx protein_coding protein_coding MGP_AJ_T0098222.1 MGP_AJ_G0036246.1 mouse_genomes_project X 166513006 166520237 - MGP_AJ_P0098222 Amelx protein_coding protein_coding MGP_AJ_T0098223.1 MGP_AJ_G0036246.1 mouse_genomes_project X 166513006 166520237 - MGP_AJ_P0098223 Amelx protein_coding protein_coding MGP_AJ_T0016506.1 MGP_AJ_G0014601.1 mouse_genomes_project X 85716449 85716789 + processed_pseudogene processed_pseudogene MGP_AJ_T0005618.1 MGP_AJ_G0004731.1 mouse_genomes_project X 166376312 166449257 - Gm15261 antisense antisense MGP_AJ_T0009405.1 MGP_AJ_G0007549.1 mouse_genomes_project X 93490639 93491415 - BC061195 lincRNA lincRNA MGP_AJ_T0095999.1 MGP_AJ_G0035639.1 mouse_genomes_project X 32873506 32877556 - MGP_AJ_P0095999 Rhox8 protein_coding protein_coding MGP_AJ_T0016652.1 MGP_AJ_G0014747.1 mouse_genomes_project X 109367882 109368863 + processed_pseudogene processed_pseudogene MGP_AJ_T0016729.1 MGP_AJ_G0014824.1 mouse_genomes_project X 131367384 131367808 - processed_pseudogene processed_pseudogene MGP_AJ_T0095706.1 MGP_AJ_G0035523.1 mouse_genomes_project X 2909486 2911163 + MGP_AJ_P0095706 Slc38a5 protein_coding protein_coding MGP_AJ_T0095707.1 MGP_AJ_G0035523.1 mouse_genomes_project X 2909504 2918255 + MGP_AJ_P0095707 Slc38a5 protein_coding protein_coding MGP_AJ_T0095708.1 MGP_AJ_G0035523.1 mouse_genomes_project X 2909658 2918255 + MGP_AJ_P0095708 Slc38a5 protein_coding protein_coding MGP_AJ_T0095709.1 MGP_AJ_G0035523.1 mouse_genomes_project X 2909921 2918250 + MGP_AJ_P0095709 Slc38a5 protein_coding protein_coding MGP_AJ_T0100388.1 MGP_AJ_G0038354.1 mouse_genomes_project X 154225155 154225319 + Gm22666 snRNA snRNA MGP_AJ_T0016427.1 MGP_AJ_G0014522.1 mouse_genomes_project X 70262629 70262845 + processed_pseudogene processed_pseudogene MGP_AJ_T0011192.1 MGP_AJ_G0009314.1 mouse_genomes_project X 100162369 100162445 - Mir421 miRNA miRNA MGP_AJ_T0096330.1 MGP_AJ_G0035750.1 mouse_genomes_project X 62042660 62043524 - MGP_AJ_P0096330 4930447F04Rik protein_coding protein_coding MGP_AJ_T0016370.1 MGP_AJ_G0014465.1 mouse_genomes_project X 56688733 56689886 + processed_pseudogene processed_pseudogene MGP_AJ_T0016556.1 MGP_AJ_G0014651.1 mouse_genomes_project X 93572977 93573782 - processed_pseudogene processed_pseudogene MGP_AJ_T0097392.1 MGP_AJ_G0036025.1 mouse_genomes_project X 116411551 116414529 + MGP_AJ_P0097392 Pabpc5 protein_coding protein_coding MGP_AJ_T0097393.1 MGP_AJ_G0036025.1 mouse_genomes_project X 116411580 116414373 + MGP_AJ_P0097393 Pabpc5 protein_coding protein_coding MGP_AJ_T0098804.1 MGP_AJ_G0036788.1 mouse_genomes_project X 54646751 54646983 - Gm26351 ribozyme ribozyme MGP_AJ_T0095951.1 MGP_AJ_G0035606.1 mouse_genomes_project X 32049751 32051325 + MGP_AJ_P0095951 Sowahd protein_coding protein_coding MGP_AJ_T0016492.1 MGP_AJ_G0014587.1 mouse_genomes_project X 84016461 84017469 - processed_pseudogene processed_pseudogene MGP_AJ_T0005565.1 MGP_AJ_G0004693.1 mouse_genomes_project X 2225906 2232195 - Gm14703 antisense antisense MGP_AJ_T0096897.1 MGP_AJ_G0035880.1 mouse_genomes_project X 85723352 85729581 - MGP_AJ_P0096897 Pet2 protein_coding protein_coding MGP_AJ_T0096898.1 MGP_AJ_G0035880.1 mouse_genomes_project X 85723352 85729581 - MGP_AJ_P0096898 Pet2 protein_coding protein_coding MGP_AJ_T0016411.1 MGP_AJ_G0014506.1 mouse_genomes_project X 66189284 66190232 - processed_pseudogene processed_pseudogene MGP_AJ_T0095911.1 MGP_AJ_G0035591.1 mouse_genomes_project X 18942000 18943233 - MGP_AJ_P0095911 Gm4985 protein_coding protein_coding MGP_AJ_T0097303.1 MGP_AJ_G0035992.1 mouse_genomes_project X 103922923 103964420 + MGP_AJ_P0097303 Gpr174 protein_coding protein_coding MGP_AJ_T0097304.1 MGP_AJ_G0035992.1 mouse_genomes_project X 103922944 103965015 + MGP_AJ_P0097304 Gpr174 protein_coding protein_coding MGP_AJ_T0097305.1 MGP_AJ_G0035992.1 mouse_genomes_project X 103922995 103963555 + MGP_AJ_P0097305 Gpr174 protein_coding protein_coding MGP_AJ_T0097306.1 MGP_AJ_G0035992.1 mouse_genomes_project X 103923284 103963567 + MGP_AJ_P0097306 Gpr174 protein_coding protein_coding MGP_AJ_T0097307.1 MGP_AJ_G0035992.1 mouse_genomes_project X 103935691 103960570 + Gpr174 protein_coding processed_transcript MGP_AJ_T0097308.1 MGP_AJ_G0035992.1 mouse_genomes_project X 103952619 103960701 + Gpr174 protein_coding processed_transcript MGP_AJ_T0097309.1 MGP_AJ_G0035992.1 mouse_genomes_project X 103952619 103965017 + MGP_AJ_P0097309 Gpr174 protein_coding protein_coding MGP_AJ_T0016260.1 MGP_AJ_G0014355.1 mouse_genomes_project X 15823367 15823737 - processed_pseudogene processed_pseudogene MGP_AJ_T0097230.1 MGP_AJ_G0035974.1 mouse_genomes_project X 101441851 101444157 - MGP_AJ_P0097230 Magee2 protein_coding protein_coding MGP_AJ_T0101644.1 MGP_AJ_G0039610.1 mouse_genomes_project X 132085983 132086097 - snoRNA snoRNA MGP_AJ_T0016893.1 MGP_AJ_G0014988.1 mouse_genomes_project X 161225846 161226022 - processed_pseudogene processed_pseudogene MGP_AJ_T0096244.1 MGP_AJ_G0035721.1 mouse_genomes_project X 52070667 52083225 - MGP_AJ_P0096244 Mmgt1 protein_coding protein_coding MGP_AJ_T0016659.1 MGP_AJ_G0014754.1 mouse_genomes_project X 110637154 110638507 + processed_pseudogene processed_pseudogene MGP_AJ_T0016620.1 MGP_AJ_G0014715.1 mouse_genomes_project X 103266323 103267196 + processed_pseudogene processed_pseudogene MGP_AJ_T0011777.1 MGP_AJ_G0009899.1 mouse_genomes_project X 134979690 134979949 - Gm24675 misc_RNA misc_RNA MGP_AJ_T0100394.1 MGP_AJ_G0038360.1 mouse_genomes_project X 163003748 163003855 - Gm22062 snRNA snRNA MGP_AJ_T0016418.1 MGP_AJ_G0014513.1 mouse_genomes_project X 66608448 66609053 + processed_pseudogene processed_pseudogene MGP_AJ_T0097640.1 MGP_AJ_G0036105.1 mouse_genomes_project X 136669236 136672323 - MGP_AJ_P0097640 Ripply1 protein_coding unknown_likely_coding MGP_AJ_T0002480.1 MGP_AJ_G0002389.1 mouse_genomes_project X 124837660 124838725 + TEC TEC MGP_AJ_T0097641.1 MGP_AJ_G0036106.1 mouse_genomes_project X 136692255 136709253 + MGP_AJ_P0097641 Cldn2 protein_coding protein_coding MGP_AJ_T0097642.1 MGP_AJ_G0036106.1 mouse_genomes_project X 136700644 136706580 + MGP_AJ_P0097642 Cldn2 protein_coding protein_coding MGP_AJ_T0097643.1 MGP_AJ_G0036106.1 mouse_genomes_project X 136703938 136706968 + MGP_AJ_P0097643 Cldn2 protein_coding protein_coding MGP_AJ_T0016469.1 MGP_AJ_G0014564.1 mouse_genomes_project X 76693442 76694849 - processed_pseudogene processed_pseudogene MGP_AJ_T0096210.1 MGP_AJ_G0035702.1 mouse_genomes_project X 48078426 48112228 + MGP_AJ_P0096210 Hprt protein_coding protein_coding MGP_AJ_T0016910.1 MGP_AJ_G0015005.1 mouse_genomes_project X 166110976 166111376 - processed_pseudogene processed_pseudogene MGP_AJ_T0016813.1 MGP_AJ_G0014908.1 mouse_genomes_project X 143810591 143816957 + processed_pseudogene processed_pseudogene MGP_AJ_T0096019.1 MGP_AJ_G0035648.1 mouse_genomes_project X 33336355 33357002 + MGP_AJ_P0096019 Atp1b4 protein_coding protein_coding MGP_AJ_T0096020.1 MGP_AJ_G0035648.1 mouse_genomes_project X 33336355 33357002 + MGP_AJ_P0096020 Atp1b4 protein_coding protein_coding MGP_AJ_T0097352.1 MGP_AJ_G0036008.1 mouse_genomes_project X 108184512 108289081 - MGP_AJ_P0097352 Hdx protein_coding protein_coding MGP_AJ_T0096821.1 MGP_AJ_G0035851.1 mouse_genomes_project X 72410261 72414094 + MGP_AJ_P0096821 protein_coding protein_coding MGP_AJ_T0016889.1 MGP_AJ_G0014984.1 mouse_genomes_project X 160506830 160507296 + processed_pseudogene processed_pseudogene MGP_AJ_T0016518.1 MGP_AJ_G0014613.1 mouse_genomes_project X 88313890 88314085 - processed_pseudogene processed_pseudogene MGP_AJ_T0016424.1 MGP_AJ_G0014519.1 mouse_genomes_project X 69252299 69252731 + processed_pseudogene processed_pseudogene MGP_AJ_T0097608.1 MGP_AJ_G0036093.1 mouse_genomes_project X 133958497 133962412 - MGP_AJ_P0097608 protein_coding protein_coding MGP_AJ_T0016750.1 MGP_AJ_G0014845.1 mouse_genomes_project X 133971684 133972524 + processed_pseudogene processed_pseudogene MGP_AJ_T0009398.1 MGP_AJ_G0007543.1 mouse_genomes_project X 82015604 82017449 + Gm14762 lincRNA lincRNA MGP_AJ_T0009399.1 MGP_AJ_G0007543.1 mouse_genomes_project X 82016373 82024988 + Gm14762 lincRNA lincRNA MGP_AJ_T0098767.1 MGP_AJ_G0036751.1 mouse_genomes_project X 13352029 13352148 - n-R5s5 rRNA rRNA MGP_AJ_T0097150.1 MGP_AJ_G0035946.1 mouse_genomes_project X 97940424 97951195 + MGP_AJ_P0097150 Nono protein_coding protein_coding MGP_AJ_T0097151.1 MGP_AJ_G0035946.1 mouse_genomes_project X 97940661 97959718 + MGP_AJ_P0097151 Nono protein_coding protein_coding MGP_AJ_T0097152.1 MGP_AJ_G0035946.1 mouse_genomes_project X 97940841 97953936 + Nono protein_coding retained_intron MGP_AJ_T0097153.1 MGP_AJ_G0035946.1 mouse_genomes_project X 97954095 97955836 + Nono protein_coding retained_intron MGP_AJ_T0097154.1 MGP_AJ_G0035946.1 mouse_genomes_project X 97954810 97959407 + Nono protein_coding retained_intron MGP_AJ_T0097155.1 MGP_AJ_G0035946.1 mouse_genomes_project X 97956237 97959208 + Nono protein_coding processed_transcript MGP_AJ_T0097156.1 MGP_AJ_G0035946.1 mouse_genomes_project X 97957327 97959323 + Nono protein_coding retained_intron MGP_AJ_T0100371.1 MGP_AJ_G0038337.1 mouse_genomes_project X 111924048 111924172 - Gm25366 snRNA snRNA MGP_AJ_T0096360.1 MGP_AJ_G0035762.1 mouse_genomes_project X 66283832 66301410 - MGP_AJ_P0096360 protein_coding protein_coding MGP_AJ_T0096361.1 MGP_AJ_G0035762.1 mouse_genomes_project X 66285038 66301410 - MGP_AJ_P0096361 protein_coding protein_coding MGP_AJ_T0096362.1 MGP_AJ_G0035762.1 mouse_genomes_project X 66285133 66294398 - protein_coding processed_transcript MGP_AJ_T0096363.1 MGP_AJ_G0035762.1 mouse_genomes_project X 66287002 66301372 - protein_coding processed_transcript MGP_AJ_T0009380.1 MGP_AJ_G0007529.1 mouse_genomes_project X 31801942 31804282 - Mdrl lincRNA lincRNA MGP_AJ_T0098054.1 MGP_AJ_G0036202.1 mouse_genomes_project X 157806250 157901466 - MGP_AJ_P0098054 Ppef1 protein_coding protein_coding MGP_AJ_T0098055.1 MGP_AJ_G0036202.1 mouse_genomes_project X 157823628 157916765 - MGP_AJ_P0098055 Ppef1 protein_coding protein_coding MGP_AJ_T0098056.1 MGP_AJ_G0036202.1 mouse_genomes_project X 157876805 157901430 - MGP_AJ_P0098056 Ppef1 protein_coding protein_coding MGP_AJ_T0096139.1 MGP_AJ_G0035677.1 mouse_genomes_project X 43541581 43552555 + MGP_AJ_P0096139 Rab33a protein_coding protein_coding MGP_AJ_T0096831.1 MGP_AJ_G0035858.1 mouse_genomes_project X 73958944 73973125 - MGP_AJ_P0096831 Pbsn protein_coding protein_coding MGP_AJ_T0096832.1 MGP_AJ_G0035858.1 mouse_genomes_project X 73958945 73973032 - MGP_AJ_P0096832 Pbsn protein_coding protein_coding MGP_AJ_T0016823.1 MGP_AJ_G0014918.1 mouse_genomes_project X 148450156 148450312 - processed_pseudogene processed_pseudogene MGP_AJ_T0095555.1 MGP_AJ_G0035494.1 mouse_genomes_project X 2232196 2243340 + MGP_AJ_P0095555 Prickle3 protein_coding protein_coding MGP_AJ_T0095556.1 MGP_AJ_G0035494.1 mouse_genomes_project X 2232408 2236065 + Prickle3 protein_coding retained_intron MGP_AJ_T0095557.1 MGP_AJ_G0035494.1 mouse_genomes_project X 2233469 2243430 + MGP_AJ_P0095557 Prickle3 protein_coding protein_coding MGP_AJ_T0095558.1 MGP_AJ_G0035494.1 mouse_genomes_project X 2237699 2243340 + Prickle3 protein_coding retained_intron MGP_AJ_T0095559.1 MGP_AJ_G0035494.1 mouse_genomes_project X 2241504 2242544 + Prickle3 protein_coding retained_intron MGP_AJ_T0101606.1 MGP_AJ_G0039572.1 mouse_genomes_project X 2118611 2118744 - Gm23082 snoRNA snoRNA MGP_AJ_T0016381.1 MGP_AJ_G0014476.1 mouse_genomes_project X 57989439 57990161 + processed_pseudogene processed_pseudogene MGP_AJ_T0016851.1 MGP_AJ_G0014946.1 mouse_genomes_project X 154184733 154185940 - processed_pseudogene processed_pseudogene MGP_AJ_T0102966.1 MGP_AJ_G0040706.1 mouse_genomes_project X 132048075 132050902 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0098777.1 MGP_AJ_G0036761.1 mouse_genomes_project X 148925445 148925552 + n-R5s14 rRNA rRNA MGP_AJ_T0097471.1 MGP_AJ_G0036051.1 mouse_genomes_project X 131143070 131184060 - MGP_AJ_P0097471 Btk protein_coding protein_coding MGP_AJ_T0097472.1 MGP_AJ_G0036051.1 mouse_genomes_project X 131143104 131184048 - MGP_AJ_P0097472 Btk protein_coding protein_coding MGP_AJ_T0097473.1 MGP_AJ_G0036051.1 mouse_genomes_project X 131149931 131184060 - Btk protein_coding retained_intron MGP_AJ_T0097474.1 MGP_AJ_G0036051.1 mouse_genomes_project X 131169422 131183393 - Btk protein_coding processed_transcript MGP_AJ_T0097475.1 MGP_AJ_G0036051.1 mouse_genomes_project X 131173723 131184489 - Btk protein_coding processed_transcript MGP_AJ_T0011165.1 MGP_AJ_G0009287.1 mouse_genomes_project X 62561971 62562046 - Mir470 miRNA miRNA MGP_AJ_T0096014.1 MGP_AJ_G0035647.1 mouse_genomes_project X 33201800 33265985 - MGP_AJ_P0096014 Tmem255a protein_coding protein_coding MGP_AJ_T0096015.1 MGP_AJ_G0035647.1 mouse_genomes_project X 33202533 33265995 - Tmem255a protein_coding retained_intron MGP_AJ_T0096016.1 MGP_AJ_G0035647.1 mouse_genomes_project X 33202533 33265995 - MGP_AJ_P0096016 Tmem255a protein_coding protein_coding MGP_AJ_T0096017.1 MGP_AJ_G0035647.1 mouse_genomes_project X 33202533 33265995 - MGP_AJ_P0096017 Tmem255a protein_coding protein_coding MGP_AJ_T0096018.1 MGP_AJ_G0035647.1 mouse_genomes_project X 33220678 33265957 - Tmem255a protein_coding processed_transcript MGP_AJ_T0096227.1 MGP_AJ_G0035711.1 mouse_genomes_project X 48891595 48907001 + MGP_AJ_P0096227 4930502E18Rik protein_coding protein_coding MGP_AJ_T0016702.1 MGP_AJ_G0014797.1 mouse_genomes_project X 123088145 123088644 - processed_pseudogene processed_pseudogene MGP_AJ_T0096228.1 MGP_AJ_G0035712.1 mouse_genomes_project X 48911457 48925742 - MGP_AJ_P0096228 1700013H16Rik protein_coding protein_coding MGP_AJ_T0096085.1 MGP_AJ_G0035661.1 mouse_genomes_project X 37558089 38204236 - MGP_AJ_P0096085 Tenm1 protein_coding protein_coding MGP_AJ_T0096086.1 MGP_AJ_G0035661.1 mouse_genomes_project X 37558089 38204257 - MGP_AJ_P0096086 Tenm1 protein_coding protein_coding MGP_AJ_T0096087.1 MGP_AJ_G0035661.1 mouse_genomes_project X 37562614 38305683 - MGP_AJ_P0096087 Tenm1 protein_coding protein_coding MGP_AJ_T0096088.1 MGP_AJ_G0035661.1 mouse_genomes_project X 37846209 38459972 - Tenm1 protein_coding retained_intron MGP_AJ_T0096089.1 MGP_AJ_G0035661.1 mouse_genomes_project X 37926886 38460095 - Tenm1 protein_coding retained_intron MGP_AJ_T0096090.1 MGP_AJ_G0035661.1 mouse_genomes_project X 38356438 38459972 - Tenm1 protein_coding processed_transcript MGP_AJ_T0011207.1 MGP_AJ_G0009329.1 mouse_genomes_project X 132951331 132951447 + Mir6383 miRNA miRNA MGP_AJ_T0016435.1 MGP_AJ_G0014530.1 mouse_genomes_project X 70769702 70770086 - processed_pseudogene processed_pseudogene MGP_AJ_T0011152.1 MGP_AJ_G0009274.1 mouse_genomes_project X 56746307 56746400 + Gm24396 miRNA miRNA MGP_AJ_T0097182.1 MGP_AJ_G0035953.1 mouse_genomes_project X 98599934 98604587 - MGP_AJ_P0097182 Rgag4 protein_coding protein_coding MGP_AJ_T0097183.1 MGP_AJ_G0035953.1 mouse_genomes_project X 98599934 98604695 - MGP_AJ_P0097183 Rgag4 protein_coding protein_coding MGP_AJ_T0097184.1 MGP_AJ_G0035953.1 mouse_genomes_project X 98600124 98600991 - Rgag4 protein_coding processed_transcript MGP_AJ_T0016472.1 MGP_AJ_G0014567.1 mouse_genomes_project X 77410347 77411550 - processed_pseudogene processed_pseudogene MGP_AJ_T0095974.1 MGP_AJ_G0035621.1 mouse_genomes_project X 32463149 32477301 + MGP_AJ_P0095974 protein_coding protein_coding MGP_AJ_T0016190.1 MGP_AJ_G0014285.1 mouse_genomes_project X 298518 299839 - processed_pseudogene processed_pseudogene MGP_AJ_T0096259.1 MGP_AJ_G0035724.1 mouse_genomes_project X 52291044 52316718 - MGP_AJ_P0096259 Mtap7d3 protein_coding protein_coding MGP_AJ_T0096260.1 MGP_AJ_G0035724.1 mouse_genomes_project X 52303990 52316706 - MGP_AJ_P0096260 Mtap7d3 protein_coding protein_coding MGP_AJ_T0011125.1 MGP_AJ_G0009247.1 mouse_genomes_project X 31381478 31381615 - Gm44485 miRNA miRNA MGP_AJ_T0096893.1 MGP_AJ_G0035878.1 mouse_genomes_project X 82495845 82501745 - MGP_AJ_P0096893 Mageb4 protein_coding protein_coding MGP_AJ_T0016621.1 MGP_AJ_G0014716.1 mouse_genomes_project X 103266521 103266814 + processed_pseudogene processed_pseudogene MGP_AJ_T0096445.1 MGP_AJ_G0035790.1 mouse_genomes_project X 69396543 69398183 - MGP_AJ_P0096445 Trex2 protein_coding protein_coding MGP_AJ_T0016434.1 MGP_AJ_G0014529.1 mouse_genomes_project X 70636454 70638845 - processed_pseudogene processed_pseudogene MGP_AJ_T0016208.1 MGP_AJ_G0014303.1 mouse_genomes_project X 3690043 3690637 - processed_pseudogene processed_pseudogene MGP_AJ_T0016237.1 MGP_AJ_G0014332.1 mouse_genomes_project X 10469941 10470483 + processed_pseudogene processed_pseudogene MGP_AJ_T0016271.1 MGP_AJ_G0014366.1 mouse_genomes_project X 18829191 18830407 - processed_pseudogene processed_pseudogene MGP_AJ_T0096124.1 MGP_AJ_G0035673.1 mouse_genomes_project X 43267961 43293591 + MGP_AJ_P0096124 Utp14a protein_coding protein_coding MGP_AJ_T0096125.1 MGP_AJ_G0035673.1 mouse_genomes_project X 43267996 43279117 + Utp14a protein_coding processed_transcript MGP_AJ_T0096126.1 MGP_AJ_G0035673.1 mouse_genomes_project X 43268017 43284235 + Utp14a protein_coding processed_transcript MGP_AJ_T0097961.1 MGP_AJ_G0036182.1 mouse_genomes_project X 152423387 152424526 + Acot9 protein_coding processed_transcript MGP_AJ_T0097962.1 MGP_AJ_G0036182.1 mouse_genomes_project X 152423387 152465185 + MGP_AJ_P0097962 Acot9 protein_coding protein_coding MGP_AJ_T0097963.1 MGP_AJ_G0036182.1 mouse_genomes_project X 152423449 152465177 + MGP_AJ_P0097963 Acot9 protein_coding nonsense_mediated_decay MGP_AJ_T0097964.1 MGP_AJ_G0036182.1 mouse_genomes_project X 152461373 152464444 + Acot9 protein_coding retained_intron MGP_AJ_T0016758.1 MGP_AJ_G0014853.1 mouse_genomes_project X 136231252 136232486 + processed_pseudogene processed_pseudogene MGP_AJ_T0005605.1 MGP_AJ_G0004723.1 mouse_genomes_project X 141326315 141349519 + antisense antisense MGP_AJ_T0005606.1 MGP_AJ_G0004723.1 mouse_genomes_project X 141340560 141349516 + antisense antisense MGP_AJ_T0095645.1 MGP_AJ_G0035510.1 mouse_genomes_project X 2504012 2508660 + MGP_AJ_P0095645 Pcsk1n protein_coding protein_coding MGP_AJ_T0100363.1 MGP_AJ_G0038329.1 mouse_genomes_project X 102369317 102369500 + Gm26020 snRNA snRNA MGP_AJ_T0016277.1 MGP_AJ_G0014372.1 mouse_genomes_project X 31660997 31661792 + processed_pseudogene processed_pseudogene MGP_AJ_T0016559.1 MGP_AJ_G0014654.1 mouse_genomes_project X 94587247 94589132 - processed_pseudogene processed_pseudogene MGP_AJ_T0097457.1 MGP_AJ_G0036048.1 mouse_genomes_project X 130897103 130954770 + MGP_AJ_P0097457 Cenpi protein_coding protein_coding MGP_AJ_T0097458.1 MGP_AJ_G0036048.1 mouse_genomes_project X 130897174 130954767 + MGP_AJ_P0097458 Cenpi protein_coding protein_coding MGP_AJ_T0097459.1 MGP_AJ_G0036048.1 mouse_genomes_project X 130897218 130899270 + MGP_AJ_P0097459 Cenpi protein_coding protein_coding MGP_AJ_T0097460.1 MGP_AJ_G0036048.1 mouse_genomes_project X 130901699 130936465 + Cenpi protein_coding processed_transcript MGP_AJ_T0097461.1 MGP_AJ_G0036048.1 mouse_genomes_project X 130938134 130954768 + Cenpi protein_coding processed_transcript MGP_AJ_T0098208.1 MGP_AJ_G0036243.1 mouse_genomes_project X 165991098 166012996 - MGP_AJ_P0098208 Msl3 protein_coding protein_coding MGP_AJ_T0098209.1 MGP_AJ_G0036243.1 mouse_genomes_project X 165993960 165998757 - Msl3 protein_coding retained_intron MGP_AJ_T0098210.1 MGP_AJ_G0036243.1 mouse_genomes_project X 165998428 166011686 - Msl3 protein_coding retained_intron MGP_AJ_T0096837.1 MGP_AJ_G0035862.1 mouse_genomes_project X 74313882 74322989 + MGP_AJ_P0096837 protein_coding protein_coding MGP_AJ_T0095819.1 MGP_AJ_G0035564.1 mouse_genomes_project X 15044113 15081091 + MGP_AJ_P0095819 Chst7 protein_coding protein_coding MGP_AJ_T0098154.1 MGP_AJ_G0036229.1 mouse_genomes_project X 162187993 162232968 - MGP_AJ_P0098154 Mospd2 protein_coding protein_coding MGP_AJ_T0098155.1 MGP_AJ_G0036229.1 mouse_genomes_project X 162188142 162232890 - MGP_AJ_P0098155 Mospd2 protein_coding protein_coding MGP_AJ_T0098156.1 MGP_AJ_G0036229.1 mouse_genomes_project X 162190033 162232928 - MGP_AJ_P0098156 Mospd2 protein_coding protein_coding MGP_AJ_T0098157.1 MGP_AJ_G0036229.1 mouse_genomes_project X 162208051 162232921 - Mospd2 protein_coding retained_intron MGP_AJ_T0098158.1 MGP_AJ_G0036229.1 mouse_genomes_project X 162208056 162232921 - Mospd2 protein_coding retained_intron MGP_AJ_T0098159.1 MGP_AJ_G0036229.1 mouse_genomes_project X 162213135 162232918 - Mospd2 protein_coding retained_intron MGP_AJ_T0098160.1 MGP_AJ_G0036229.1 mouse_genomes_project X 162216904 162232920 - Mospd2 protein_coding retained_intron MGP_AJ_T0098161.1 MGP_AJ_G0036229.1 mouse_genomes_project X 162217230 162232936 - Mospd2 protein_coding processed_transcript MGP_AJ_T0098162.1 MGP_AJ_G0036229.1 mouse_genomes_project X 162232253 162232915 - Mospd2 protein_coding retained_intron MGP_AJ_T0095513.1 MGP_AJ_G0035484.1 mouse_genomes_project X 1387541 1509899 + MGP_AJ_P0095513 Dgkk protein_coding protein_coding MGP_AJ_T0096423.1 MGP_AJ_G0035778.1 mouse_genomes_project X 68714568 68731965 + MGP_AJ_P0096423 Gabrq protein_coding protein_coding MGP_AJ_T0096424.1 MGP_AJ_G0035778.1 mouse_genomes_project X 68714826 68727906 + MGP_AJ_P0096424 Gabrq protein_coding protein_coding MGP_AJ_T0102944.1 MGP_AJ_G0040684.1 mouse_genomes_project X 70773176 70774043 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0096751.1 MGP_AJ_G0035830.1 mouse_genomes_project X 70571377 70572313 - MGP_AJ_P0096751 Olfr1326-ps1 protein_coding protein_coding MGP_AJ_T0102940.1 MGP_AJ_G0040680.1 mouse_genomes_project X 48842303 48850311 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0097390.1 MGP_AJ_G0036023.1 mouse_genomes_project X 113221100 113221448 + MGP_AJ_P0097390 H2afb2 protein_coding protein_coding MGP_AJ_T0096890.1 MGP_AJ_G0035875.1 mouse_genomes_project X 82061073 82083061 + MGP_AJ_P0096890 5430427O19Rik protein_coding protein_coding MGP_AJ_T0100348.1 MGP_AJ_G0038314.1 mouse_genomes_project X 62469099 62469238 + Gm23000 snRNA snRNA MGP_AJ_T0009402.1 MGP_AJ_G0007546.1 mouse_genomes_project X 90948238 90953912 + Gm14827 lincRNA lincRNA MGP_AJ_T0016527.1 MGP_AJ_G0014622.1 mouse_genomes_project X 90400895 90401166 + processed_pseudogene processed_pseudogene MGP_AJ_T0100316.1 MGP_AJ_G0038282.1 mouse_genomes_project X 2705803 2705905 + Gm22083 snRNA snRNA MGP_AJ_T0016361.1 MGP_AJ_G0014456.1 mouse_genomes_project X 55612048 55612644 + processed_pseudogene processed_pseudogene MGP_AJ_T0101888.1 MGP_AJ_G0039759.1 mouse_genomes_project X 2726697 2727517 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0095904.1 MGP_AJ_G0035589.1 mouse_genomes_project X 18674494 18786597 + MGP_AJ_P0095904 Wdr44 protein_coding protein_coding MGP_AJ_T0095905.1 MGP_AJ_G0035589.1 mouse_genomes_project X 18674520 18731905 + Wdr44 protein_coding retained_intron MGP_AJ_T0095906.1 MGP_AJ_G0035589.1 mouse_genomes_project X 18674539 18786632 + MGP_AJ_P0095906 Wdr44 protein_coding protein_coding MGP_AJ_T0095907.1 MGP_AJ_G0035589.1 mouse_genomes_project X 18674602 18737687 + MGP_AJ_P0095907 Wdr44 protein_coding nonsense_mediated_decay MGP_AJ_T0095908.1 MGP_AJ_G0035589.1 mouse_genomes_project X 18755632 18762042 + Wdr44 protein_coding retained_intron MGP_AJ_T0016852.1 MGP_AJ_G0014947.1 mouse_genomes_project X 154581658 154582704 - processed_pseudogene processed_pseudogene MGP_AJ_T0095514.1 MGP_AJ_G0035485.1 mouse_genomes_project X 1540621 1586084 - MGP_AJ_P0095514 Ccnb3 protein_coding protein_coding MGP_AJ_T0095515.1 MGP_AJ_G0035485.1 mouse_genomes_project X 1540621 1597108 - MGP_AJ_P0095515 Ccnb3 protein_coding protein_coding MGP_AJ_T0016210.1 MGP_AJ_G0014305.1 mouse_genomes_project X 3777803 3778854 - processed_pseudogene processed_pseudogene MGP_AJ_T0011776.1 MGP_AJ_G0009898.1 mouse_genomes_project X 134643784 134644069 - Gm25393 misc_RNA misc_RNA MGP_AJ_T0011180.1 MGP_AJ_G0009302.1 mouse_genomes_project X 70002907 70002995 - Mir718 miRNA miRNA MGP_AJ_T0016732.1 MGP_AJ_G0014827.1 mouse_genomes_project X 131481125 131481987 - processed_pseudogene processed_pseudogene MGP_AJ_T0016487.1 MGP_AJ_G0014582.1 mouse_genomes_project X 82012137 82012396 + processed_pseudogene processed_pseudogene MGP_AJ_T0102128.1 MGP_AJ_G0039878.1 mouse_genomes_project X 99735014 99814319 - unitary_pseudogene processed_transcript MGP_AJ_T0102129.1 MGP_AJ_G0039878.1 mouse_genomes_project X 99788678 99814319 - unitary_pseudogene unitary_pseudogene MGP_AJ_T0102130.1 MGP_AJ_G0039878.1 mouse_genomes_project X 99788678 99878127 - unitary_pseudogene processed_transcript MGP_AJ_T0102131.1 MGP_AJ_G0039878.1 mouse_genomes_project X 99788744 99810752 - unitary_pseudogene processed_transcript MGP_AJ_T0102132.1 MGP_AJ_G0039878.1 mouse_genomes_project X 99790032 99814311 - unitary_pseudogene retained_intron MGP_AJ_T0102133.1 MGP_AJ_G0039878.1 mouse_genomes_project X 99791572 99860015 - unitary_pseudogene processed_transcript MGP_AJ_T0102134.1 MGP_AJ_G0039878.1 mouse_genomes_project X 99791583 99848465 - unitary_pseudogene processed_transcript MGP_AJ_T0097406.1 MGP_AJ_G0036030.1 mouse_genomes_project X 122642859 122646247 - MGP_AJ_P0097406 protein_coding protein_coding MGP_AJ_T0016324.1 MGP_AJ_G0014419.1 mouse_genomes_project X 44181516 44181916 + processed_pseudogene processed_pseudogene MGP_AJ_T0016532.1 MGP_AJ_G0014627.1 mouse_genomes_project X 90814574 90815427 + processed_pseudogene processed_pseudogene MGP_AJ_T0100352.1 MGP_AJ_G0038318.1 mouse_genomes_project X 73688357 73688530 + Gm23121 snRNA snRNA MGP_AJ_T0097850.1 MGP_AJ_G0036153.1 mouse_genomes_project X 148289288 148428902 + Fam120c protein_coding retained_intron MGP_AJ_T0097851.1 MGP_AJ_G0036153.1 mouse_genomes_project X 148289288 148428902 + MGP_AJ_P0097851 Fam120c protein_coding protein_coding MGP_AJ_T0016331.1 MGP_AJ_G0014426.1 mouse_genomes_project X 46256757 46257874 - processed_pseudogene processed_pseudogene MGP_AJ_T0095736.1 MGP_AJ_G0035539.1 mouse_genomes_project X 4913158 5074615 - MGP_AJ_P0095736 Rpgr protein_coding protein_coding MGP_AJ_T0095737.1 MGP_AJ_G0035539.1 mouse_genomes_project X 5014671 5074615 - MGP_AJ_P0095737 Rpgr protein_coding protein_coding MGP_AJ_T0095738.1 MGP_AJ_G0035539.1 mouse_genomes_project X 5014680 5074388 - MGP_AJ_P0095738 Rpgr protein_coding protein_coding MGP_AJ_T0095739.1 MGP_AJ_G0035539.1 mouse_genomes_project X 5017074 5074615 - MGP_AJ_P0095739 Rpgr protein_coding protein_coding MGP_AJ_T0095740.1 MGP_AJ_G0035539.1 mouse_genomes_project X 5037797 5074453 - Rpgr protein_coding retained_intron MGP_AJ_T0095741.1 MGP_AJ_G0035539.1 mouse_genomes_project X 5064695 5074428 - Rpgr protein_coding retained_intron MGP_AJ_T0095742.1 MGP_AJ_G0035539.1 mouse_genomes_project X 5071242 5074177 - Rpgr protein_coding processed_transcript MGP_AJ_T0011139.1 MGP_AJ_G0009261.1 mouse_genomes_project X 47818812 47818895 - Mir18b miRNA miRNA MGP_AJ_T0095945.1 MGP_AJ_G0035604.1 mouse_genomes_project X 31879100 31895838 - MGP_AJ_P0095945 protein_coding protein_coding MGP_AJ_T0005581.1 MGP_AJ_G0004703.1 mouse_genomes_project X 51851377 51854548 - Gm2155 antisense antisense MGP_AJ_T0016848.1 MGP_AJ_G0014943.1 mouse_genomes_project X 153700871 153701799 + processed_pseudogene processed_pseudogene MGP_AJ_T0096811.1 MGP_AJ_G0035848.1 mouse_genomes_project X 71589449 71599171 + MGP_AJ_P0096811 Vbp1 protein_coding protein_coding MGP_AJ_T0096812.1 MGP_AJ_G0035848.1 mouse_genomes_project X 71589449 71612154 + MGP_AJ_P0096812 Vbp1 protein_coding protein_coding MGP_AJ_T0096813.1 MGP_AJ_G0035848.1 mouse_genomes_project X 71589467 71596879 + Vbp1 protein_coding retained_intron MGP_AJ_T0011154.1 MGP_AJ_G0009276.1 mouse_genomes_project X 62516455 62516532 - Mir743b miRNA miRNA MGP_AJ_T0016495.1 MGP_AJ_G0014590.1 mouse_genomes_project X 84683050 84683361 + processed_pseudogene processed_pseudogene MGP_AJ_T0101633.1 MGP_AJ_G0039599.1 mouse_genomes_project X 113292057 113292172 + Gm24438 snoRNA snoRNA MGP_AJ_T0097768.1 MGP_AJ_G0036142.1 mouse_genomes_project X 144342275 144387024 - MGP_AJ_P0097768 Lrch2 protein_coding protein_coding MGP_AJ_T0097769.1 MGP_AJ_G0036142.1 mouse_genomes_project X 144342280 144428466 - MGP_AJ_P0097769 Lrch2 protein_coding protein_coding MGP_AJ_T0097770.1 MGP_AJ_G0036142.1 mouse_genomes_project X 144342287 144372074 - Lrch2 protein_coding retained_intron MGP_AJ_T0097771.1 MGP_AJ_G0036142.1 mouse_genomes_project X 144342287 144428466 - MGP_AJ_P0097771 Lrch2 protein_coding protein_coding MGP_AJ_T0097772.1 MGP_AJ_G0036142.1 mouse_genomes_project X 144344713 144395113 - MGP_AJ_P0097772 Lrch2 protein_coding protein_coding MGP_AJ_T0097773.1 MGP_AJ_G0036142.1 mouse_genomes_project X 144344857 144436701 - MGP_AJ_P0097773 Lrch2 protein_coding unknown_likely_coding MGP_AJ_T0097774.1 MGP_AJ_G0036142.1 mouse_genomes_project X 144357751 144377379 - Lrch2 protein_coding processed_transcript MGP_AJ_T0100325.1 MGP_AJ_G0038291.1 mouse_genomes_project X 14781649 14781756 - Gm23678 snRNA snRNA MGP_AJ_T0096447.1 MGP_AJ_G0035792.1 mouse_genomes_project X 69448633 69457715 + Bgn protein_coding processed_transcript MGP_AJ_T0096448.1 MGP_AJ_G0035792.1 mouse_genomes_project X 69448633 69461612 + MGP_AJ_P0096448 Bgn protein_coding protein_coding MGP_AJ_T0096449.1 MGP_AJ_G0035792.1 mouse_genomes_project X 69448654 69457367 + Bgn protein_coding retained_intron MGP_AJ_T0096450.1 MGP_AJ_G0035792.1 mouse_genomes_project X 69448664 69451329 + Bgn protein_coding retained_intron MGP_AJ_T0096451.1 MGP_AJ_G0035792.1 mouse_genomes_project X 69448666 69461608 + MGP_AJ_P0096451 Bgn protein_coding protein_coding MGP_AJ_T0096452.1 MGP_AJ_G0035792.1 mouse_genomes_project X 69448670 69457352 + Bgn protein_coding retained_intron MGP_AJ_T0096453.1 MGP_AJ_G0035792.1 mouse_genomes_project X 69457026 69458279 + Bgn protein_coding processed_transcript MGP_AJ_T0096454.1 MGP_AJ_G0035792.1 mouse_genomes_project X 69460580 69461605 + Bgn protein_coding processed_transcript MGP_AJ_T0096910.1 MGP_AJ_G0035889.1 mouse_genomes_project X 89771755 90099595 - MGP_AJ_P0096910 Pola1 protein_coding protein_coding MGP_AJ_T0096911.1 MGP_AJ_G0035889.1 mouse_genomes_project X 89950115 89960955 - Pola1 protein_coding processed_transcript MGP_AJ_T0096912.1 MGP_AJ_G0035889.1 mouse_genomes_project X 90090048 90099583 - Pola1 protein_coding retained_intron MGP_AJ_T0096913.1 MGP_AJ_G0035889.1 mouse_genomes_project X 90090726 90099555 - Pola1 protein_coding processed_transcript MGP_AJ_T0097294.1 MGP_AJ_G0035990.1 mouse_genomes_project X 103747664 103764143 + MGP_AJ_P0097294 P2ry10 protein_coding protein_coding MGP_AJ_T0097295.1 MGP_AJ_G0035990.1 mouse_genomes_project X 103748406 103764147 + MGP_AJ_P0097295 P2ry10 protein_coding protein_coding MGP_AJ_T0097296.1 MGP_AJ_G0035990.1 mouse_genomes_project X 103748450 103764147 + MGP_AJ_P0097296 P2ry10 protein_coding protein_coding MGP_AJ_T0098144.1 MGP_AJ_G0036226.1 mouse_genomes_project X 161681554 161696058 + MGP_AJ_P0098144 Piga protein_coding nonsense_mediated_decay MGP_AJ_T0098145.1 MGP_AJ_G0036226.1 mouse_genomes_project X 161681554 161696053 + MGP_AJ_P0098145 Piga protein_coding protein_coding MGP_AJ_T0098146.1 MGP_AJ_G0036226.1 mouse_genomes_project X 161681579 161696051 + MGP_AJ_P0098146 Piga protein_coding nonsense_mediated_decay MGP_AJ_T0098147.1 MGP_AJ_G0036226.1 mouse_genomes_project X 161681670 161696055 + MGP_AJ_P0098147 Piga protein_coding protein_coding MGP_AJ_T0098148.1 MGP_AJ_G0036226.1 mouse_genomes_project X 161684347 161693736 + MGP_AJ_P0098148 Piga protein_coding protein_coding MGP_AJ_T0098149.1 MGP_AJ_G0036226.1 mouse_genomes_project X 161687277 161693823 + Piga protein_coding retained_intron MGP_AJ_T0097330.1 MGP_AJ_G0036000.1 mouse_genomes_project X 105712003 105721368 - MGP_AJ_P0097330 Hmgn5 protein_coding protein_coding MGP_AJ_T0096729.1 MGP_AJ_G0035828.1 mouse_genomes_project X 70381257 70426806 + MGP_AJ_P0096729 Ikbkg protein_coding protein_coding MGP_AJ_T0096730.1 MGP_AJ_G0035828.1 mouse_genomes_project X 70381258 70444693 + MGP_AJ_P0096730 Ikbkg protein_coding protein_coding MGP_AJ_T0096731.1 MGP_AJ_G0035828.1 mouse_genomes_project X 70381258 70444693 + MGP_AJ_P0096731 Ikbkg protein_coding protein_coding MGP_AJ_T0096732.1 MGP_AJ_G0035828.1 mouse_genomes_project X 70381294 70432701 + MGP_AJ_P0096732 Ikbkg protein_coding protein_coding MGP_AJ_T0096736.1 MGP_AJ_G0035828.1 mouse_genomes_project X 70417164 70432763 + MGP_AJ_P0096736 Ikbkg protein_coding protein_coding MGP_AJ_T0096737.1 MGP_AJ_G0035828.1 mouse_genomes_project X 70417234 70439656 + MGP_AJ_P0096737 Ikbkg protein_coding protein_coding MGP_AJ_T0096738.1 MGP_AJ_G0035828.1 mouse_genomes_project X 70417242 70444693 + MGP_AJ_P0096738 Ikbkg protein_coding protein_coding MGP_AJ_T0096739.1 MGP_AJ_G0035828.1 mouse_genomes_project X 70417242 70444769 + MGP_AJ_P0096739 Ikbkg protein_coding protein_coding MGP_AJ_T0096740.1 MGP_AJ_G0035828.1 mouse_genomes_project X 70417263 70440015 + MGP_AJ_P0096740 Ikbkg protein_coding protein_coding MGP_AJ_T0096741.1 MGP_AJ_G0035828.1 mouse_genomes_project X 70417268 70425681 + MGP_AJ_P0096741 Ikbkg protein_coding protein_coding MGP_AJ_T0096743.1 MGP_AJ_G0035828.1 mouse_genomes_project X 70420532 70429983 + MGP_AJ_P0096743 Ikbkg protein_coding protein_coding MGP_AJ_T0096744.1 MGP_AJ_G0035828.1 mouse_genomes_project X 70422093 70436170 + MGP_AJ_P0096744 Ikbkg protein_coding protein_coding MGP_AJ_T0096745.1 MGP_AJ_G0035828.1 mouse_genomes_project X 70422127 70444693 + MGP_AJ_P0096745 Ikbkg protein_coding protein_coding MGP_AJ_T0096746.1 MGP_AJ_G0035828.1 mouse_genomes_project X 70422483 70441201 + MGP_AJ_P0096746 Ikbkg protein_coding protein_coding MGP_AJ_T0096747.1 MGP_AJ_G0035828.1 mouse_genomes_project X 70422516 70442435 + MGP_AJ_P0096747 Ikbkg protein_coding protein_coding MGP_AJ_T0096748.1 MGP_AJ_G0035828.1 mouse_genomes_project X 70422534 70426168 + Ikbkg protein_coding retained_intron MGP_AJ_T0096749.1 MGP_AJ_G0035828.1 mouse_genomes_project X 70422575 70436667 + MGP_AJ_P0096749 Ikbkg protein_coding protein_coding MGP_AJ_T0096750.1 MGP_AJ_G0035828.1 mouse_genomes_project X 70431699 70439138 + Ikbkg protein_coding processed_transcript MGP_AJ_T0102957.1 MGP_AJ_G0040697.1 mouse_genomes_project X 85592813 85593956 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0095583.1 MGP_AJ_G0035500.1 mouse_genomes_project X 2308921 2318882 - MGP_AJ_P0095583 Ccdc120 protein_coding protein_coding MGP_AJ_T0095584.1 MGP_AJ_G0035500.1 mouse_genomes_project X 2315168 2317751 - MGP_AJ_P0095584 Ccdc120 protein_coding protein_coding MGP_AJ_T0095585.1 MGP_AJ_G0035500.1 mouse_genomes_project X 2315425 2318849 - Ccdc120 protein_coding processed_transcript MGP_AJ_T0095586.1 MGP_AJ_G0035500.1 mouse_genomes_project X 2315439 2317772 - Ccdc120 protein_coding processed_transcript MGP_AJ_T0095587.1 MGP_AJ_G0035500.1 mouse_genomes_project X 2315450 2318865 - Ccdc120 protein_coding processed_transcript MGP_AJ_T0095588.1 MGP_AJ_G0035500.1 mouse_genomes_project X 2315577 2317748 - Ccdc120 protein_coding processed_transcript MGP_AJ_T0095589.1 MGP_AJ_G0035500.1 mouse_genomes_project X 2315667 2328587 - Ccdc120 protein_coding processed_transcript MGP_AJ_T0095590.1 MGP_AJ_G0035500.1 mouse_genomes_project X 2315720 2328579 - Ccdc120 protein_coding processed_transcript MGP_AJ_T0005573.1 MGP_AJ_G0004696.1 mouse_genomes_project X 5589418 5590656 - Gm14493 antisense antisense MGP_AJ_T0101905.1 MGP_AJ_G0039769.1 mouse_genomes_project X 104208858 104210077 + transcribed_processed_pseudogene processed_transcript MGP_AJ_T0101906.1 MGP_AJ_G0039769.1 mouse_genomes_project X 104208867 104210022 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0016674.1 MGP_AJ_G0014769.1 mouse_genomes_project X 113855294 113855567 - processed_pseudogene processed_pseudogene MGP_AJ_T0097362.1 MGP_AJ_G0036012.1 mouse_genomes_project X 108996011 109014590 - MGP_AJ_P0097362 Satl1 protein_coding protein_coding MGP_AJ_T0097363.1 MGP_AJ_G0036012.1 mouse_genomes_project X 108996013 109015547 - MGP_AJ_P0097363 Satl1 protein_coding protein_coding MGP_AJ_T0016293.1 MGP_AJ_G0014388.1 mouse_genomes_project X 35741056 35741335 + processed_pseudogene processed_pseudogene MGP_AJ_T0016347.1 MGP_AJ_G0014442.1 mouse_genomes_project X 51527714 51528441 - processed_pseudogene processed_pseudogene MGP_AJ_T0005604.1 MGP_AJ_G0004722.1 mouse_genomes_project X 138605556 138606882 + Gm15295 antisense antisense MGP_AJ_T0096176.1 MGP_AJ_G0035688.1 mouse_genomes_project X 44878140 44879073 - MGP_AJ_P0096176 Olfr1322 protein_coding protein_coding MGP_AJ_T0016346.1 MGP_AJ_G0014441.1 mouse_genomes_project X 51274337 51275327 - processed_pseudogene processed_pseudogene MGP_AJ_T0098096.1 MGP_AJ_G0036213.1 mouse_genomes_project X 160136734 160218583 + MGP_AJ_P0098096 Ctps2 protein_coding protein_coding MGP_AJ_T0098097.1 MGP_AJ_G0036213.1 mouse_genomes_project X 160136741 160158137 + Ctps2 protein_coding processed_transcript MGP_AJ_T0098098.1 MGP_AJ_G0036213.1 mouse_genomes_project X 160136741 160157812 + Ctps2 protein_coding processed_transcript MGP_AJ_T0098099.1 MGP_AJ_G0036213.1 mouse_genomes_project X 160137101 160267797 + MGP_AJ_P0098099 Ctps2 protein_coding protein_coding MGP_AJ_T0098100.1 MGP_AJ_G0036213.1 mouse_genomes_project X 160137128 160267980 + MGP_AJ_P0098100 Ctps2 protein_coding protein_coding MGP_AJ_T0098101.1 MGP_AJ_G0036213.1 mouse_genomes_project X 160137265 160267973 + MGP_AJ_P0098101 Ctps2 protein_coding protein_coding MGP_AJ_T0098102.1 MGP_AJ_G0036213.1 mouse_genomes_project X 160137281 160140056 + Ctps2 protein_coding processed_transcript MGP_AJ_T0098103.1 MGP_AJ_G0036213.1 mouse_genomes_project X 160137366 160267797 + MGP_AJ_P0098103 Ctps2 protein_coding protein_coding MGP_AJ_T0098104.1 MGP_AJ_G0036213.1 mouse_genomes_project X 160137667 160159008 + Ctps2 protein_coding processed_transcript MGP_AJ_T0098105.1 MGP_AJ_G0036213.1 mouse_genomes_project X 160166305 160173342 + Ctps2 protein_coding processed_transcript MGP_AJ_T0098106.1 MGP_AJ_G0036213.1 mouse_genomes_project X 160178209 160215248 + Ctps2 protein_coding processed_transcript MGP_AJ_T0098107.1 MGP_AJ_G0036213.1 mouse_genomes_project X 160178590 160178880 + Ctps2 protein_coding processed_transcript MGP_AJ_T0098108.1 MGP_AJ_G0036213.1 mouse_genomes_project X 160178696 160270021 + MGP_AJ_P0098108 Ctps2 protein_coding protein_coding MGP_AJ_T0016666.1 MGP_AJ_G0014761.1 mouse_genomes_project X 111827648 111830501 - processed_pseudogene processed_pseudogene MGP_AJ_T0011151.1 MGP_AJ_G0009273.1 mouse_genomes_project X 55953781 55953871 - Mir505 miRNA miRNA MGP_AJ_T0016655.1 MGP_AJ_G0014750.1 mouse_genomes_project X 109542790 109543725 + processed_pseudogene processed_pseudogene MGP_AJ_T0101629.1 MGP_AJ_G0039595.1 mouse_genomes_project X 97644442 97644562 - Gm24061 snoRNA snoRNA MGP_AJ_T0016865.1 MGP_AJ_G0014960.1 mouse_genomes_project X 156037031 156037916 + processed_pseudogene processed_pseudogene MGP_AJ_T0016505.1 MGP_AJ_G0014600.1 mouse_genomes_project X 85427168 85428733 - processed_pseudogene processed_pseudogene MGP_AJ_T0016447.1 MGP_AJ_G0014542.1 mouse_genomes_project X 72997976 72998231 + processed_pseudogene processed_pseudogene MGP_AJ_T0016786.1 MGP_AJ_G0014881.1 mouse_genomes_project X 139690944 139691407 - processed_pseudogene processed_pseudogene MGP_AJ_T0011114.1 MGP_AJ_G0009236.1 mouse_genomes_project X 1810468 1810536 - Mir188 miRNA miRNA MGP_AJ_T0009444.1 MGP_AJ_G0007570.1 mouse_genomes_project X 158493646 158516583 + lincRNA lincRNA MGP_AJ_T0016579.1 MGP_AJ_G0014674.1 mouse_genomes_project X 98714246 98714710 - processed_pseudogene processed_pseudogene MGP_AJ_T0096932.1 MGP_AJ_G0035894.1 mouse_genomes_project X 90685118 90711277 - MGP_AJ_P0096932 Eif2s3x protein_coding protein_coding MGP_AJ_T0096933.1 MGP_AJ_G0035894.1 mouse_genomes_project X 90697070 90711219 - MGP_AJ_P0096933 Eif2s3x protein_coding protein_coding MGP_AJ_T0096934.1 MGP_AJ_G0035894.1 mouse_genomes_project X 90700356 90711430 - Eif2s3x protein_coding processed_transcript MGP_AJ_T0102973.1 MGP_AJ_G0040713.1 mouse_genomes_project X 151323554 151326915 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0009365.1 MGP_AJ_G0007520.1 mouse_genomes_project X 5566547 5589188 - lincRNA lincRNA MGP_AJ_T0016318.1 MGP_AJ_G0014413.1 mouse_genomes_project X 42376675 42377641 - processed_pseudogene processed_pseudogene MGP_AJ_T0016663.1 MGP_AJ_G0014758.1 mouse_genomes_project X 111396189 111396396 + processed_pseudogene processed_pseudogene MGP_AJ_T0018680.1 MGP_AJ_G0015770.1 mouse_genomes_project X 136105376 136229559 - Platr21 processed_transcript processed_transcript MGP_AJ_T0018681.1 MGP_AJ_G0015770.1 mouse_genomes_project X 136220279 136230523 - Platr21 processed_transcript processed_transcript MGP_AJ_T0097316.1 MGP_AJ_G0035995.1 mouse_genomes_project X 104437516 104472163 - MGP_AJ_P0097316 2610002M06Rik protein_coding protein_coding MGP_AJ_T0097317.1 MGP_AJ_G0035995.1 mouse_genomes_project X 104442602 104449802 - 2610002M06Rik protein_coding retained_intron MGP_AJ_T0096851.1 MGP_AJ_G0035867.1 mouse_genomes_project X 75417866 75671596 - MGP_AJ_P0096851 Gm7173 protein_coding protein_coding MGP_AJ_T0096852.1 MGP_AJ_G0035867.1 mouse_genomes_project X 75482284 75502100 - Gm7173 protein_coding retained_intron MGP_AJ_T0096853.1 MGP_AJ_G0035867.1 mouse_genomes_project X 75482482 75510039 - MGP_AJ_P0096853 Gm7173 protein_coding protein_coding MGP_AJ_T0096854.1 MGP_AJ_G0035867.1 mouse_genomes_project X 75497339 75510148 - Gm7173 protein_coding processed_transcript MGP_AJ_T0096855.1 MGP_AJ_G0035867.1 mouse_genomes_project X 75556090 75588904 - MGP_AJ_P0096855 Gm7173 protein_coding protein_coding MGP_AJ_T0096856.1 MGP_AJ_G0035867.1 mouse_genomes_project X 75636332 75671596 - MGP_AJ_P0096856 Gm7173 protein_coding protein_coding MGP_AJ_T0016414.1 MGP_AJ_G0014509.1 mouse_genomes_project X 66394388 66394881 - processed_pseudogene processed_pseudogene MGP_AJ_T0097015.1 MGP_AJ_G0035917.1 mouse_genomes_project X 95026057 95355684 - MGP_AJ_P0097015 protein_coding protein_coding MGP_AJ_T0097016.1 MGP_AJ_G0035917.1 mouse_genomes_project X 95030031 95355480 - MGP_AJ_P0097016 protein_coding protein_coding MGP_AJ_T0097017.1 MGP_AJ_G0035917.1 mouse_genomes_project X 95030037 95051301 - MGP_AJ_P0097017 protein_coding protein_coding MGP_AJ_T0097018.1 MGP_AJ_G0035917.1 mouse_genomes_project X 95035348 95051247 - protein_coding processed_transcript MGP_AJ_T0097019.1 MGP_AJ_G0035917.1 mouse_genomes_project X 95190043 95355724 - protein_coding retained_intron MGP_AJ_T0097020.1 MGP_AJ_G0035917.1 mouse_genomes_project X 95190271 95355684 - protein_coding retained_intron MGP_AJ_T0097021.1 MGP_AJ_G0035917.1 mouse_genomes_project X 95209776 95355684 - MGP_AJ_P0097021 protein_coding protein_coding MGP_AJ_T0097022.1 MGP_AJ_G0035917.1 mouse_genomes_project X 95272417 95355308 - protein_coding retained_intron MGP_AJ_T0097023.1 MGP_AJ_G0035917.1 mouse_genomes_project X 95338817 95355133 - protein_coding processed_transcript MGP_AJ_T0097024.1 MGP_AJ_G0035917.1 mouse_genomes_project X 95352419 95355324 - protein_coding retained_intron MGP_AJ_T0100379.1 MGP_AJ_G0038345.1 mouse_genomes_project X 137616939 137617046 + Gm23199 snRNA snRNA MGP_AJ_T0101632.1 MGP_AJ_G0039598.1 mouse_genomes_project X 110469109 110469233 - Gm23985 snoRNA snoRNA MGP_AJ_T0016880.1 MGP_AJ_G0014975.1 mouse_genomes_project X 159578825 159581106 + processed_pseudogene processed_pseudogene MGP_AJ_T0098212.1 MGP_AJ_G0036245.1 mouse_genomes_project X 166131149 166635217 + MGP_AJ_P0098212 Arhgap6 protein_coding protein_coding MGP_AJ_T0098213.1 MGP_AJ_G0036245.1 mouse_genomes_project X 166375362 166588936 + Arhgap6 protein_coding retained_intron MGP_AJ_T0098214.1 MGP_AJ_G0036245.1 mouse_genomes_project X 166375362 166591422 + MGP_AJ_P0098214 Arhgap6 protein_coding protein_coding MGP_AJ_T0098215.1 MGP_AJ_G0036245.1 mouse_genomes_project X 166375362 166635217 + MGP_AJ_P0098215 Arhgap6 protein_coding nonsense_mediated_decay MGP_AJ_T0098216.1 MGP_AJ_G0036245.1 mouse_genomes_project X 166375362 166635217 + MGP_AJ_P0098216 Arhgap6 protein_coding protein_coding MGP_AJ_T0098217.1 MGP_AJ_G0036245.1 mouse_genomes_project X 166375362 166596307 + MGP_AJ_P0098217 Arhgap6 protein_coding protein_coding MGP_AJ_T0098218.1 MGP_AJ_G0036245.1 mouse_genomes_project X 166457815 166635217 + MGP_AJ_P0098218 Arhgap6 protein_coding protein_coding MGP_AJ_T0098224.1 MGP_AJ_G0036245.1 mouse_genomes_project X 166553366 166625893 + MGP_AJ_P0098224 Arhgap6 protein_coding unknown_likely_coding MGP_AJ_T0097950.1 MGP_AJ_G0036177.1 mouse_genomes_project X 151427379 151431547 - MGP_AJ_P0097950 4930524N10Rik protein_coding protein_coding MGP_AJ_T0016335.1 MGP_AJ_G0014430.1 mouse_genomes_project X 46664764 46664962 - processed_pseudogene processed_pseudogene MGP_AJ_T0097755.1 MGP_AJ_G0036138.1 mouse_genomes_project X 142175904 142233082 - MGP_AJ_P0097755 protein_coding protein_coding MGP_AJ_T0097756.1 MGP_AJ_G0036138.1 mouse_genomes_project X 142225146 142233221 - MGP_AJ_P0097756 protein_coding protein_coding MGP_AJ_T0100346.1 MGP_AJ_G0038312.1 mouse_genomes_project X 57556371 57556478 + Gm25412 snRNA snRNA MGP_AJ_T0011206.1 MGP_AJ_G0009328.1 mouse_genomes_project X 132521765 132521869 - Mir1970 miRNA miRNA MGP_AJ_T0100393.1 MGP_AJ_G0038359.1 mouse_genomes_project X 161530329 161530435 - Gm25367 snRNA snRNA MGP_AJ_T0016705.1 MGP_AJ_G0014800.1 mouse_genomes_project X 123419759 123420123 - processed_pseudogene processed_pseudogene MGP_AJ_T0100330.1 MGP_AJ_G0038296.1 mouse_genomes_project X 31364170 31364274 + Gm25047 snRNA snRNA MGP_AJ_T0016365.1 MGP_AJ_G0014460.1 mouse_genomes_project X 56270893 56271687 - processed_pseudogene processed_pseudogene MGP_AJ_T0016630.1 MGP_AJ_G0014725.1 mouse_genomes_project X 104014960 104015987 + processed_pseudogene processed_pseudogene MGP_AJ_T0097340.1 MGP_AJ_G0036007.1 mouse_genomes_project X 108000769 108078399 - MGP_AJ_P0097340 Rps6ka6 protein_coding protein_coding MGP_AJ_T0097341.1 MGP_AJ_G0036007.1 mouse_genomes_project X 108000769 108078551 - MGP_AJ_P0097341 Rps6ka6 protein_coding protein_coding MGP_AJ_T0097342.1 MGP_AJ_G0036007.1 mouse_genomes_project X 108000770 108097417 - MGP_AJ_P0097342 Rps6ka6 protein_coding protein_coding MGP_AJ_T0097343.1 MGP_AJ_G0036007.1 mouse_genomes_project X 108000770 108078551 - MGP_AJ_P0097343 Rps6ka6 protein_coding protein_coding MGP_AJ_T0097344.1 MGP_AJ_G0036007.1 mouse_genomes_project X 108002356 108078461 - MGP_AJ_P0097344 Rps6ka6 protein_coding protein_coding MGP_AJ_T0097345.1 MGP_AJ_G0036007.1 mouse_genomes_project X 108049293 108097396 - MGP_AJ_P0097345 Rps6ka6 protein_coding protein_coding MGP_AJ_T0097346.1 MGP_AJ_G0036007.1 mouse_genomes_project X 108049325 108078811 - MGP_AJ_P0097346 Rps6ka6 protein_coding protein_coding MGP_AJ_T0097347.1 MGP_AJ_G0036007.1 mouse_genomes_project X 108050232 108143069 - MGP_AJ_P0097347 Rps6ka6 protein_coding protein_coding MGP_AJ_T0097348.1 MGP_AJ_G0036007.1 mouse_genomes_project X 108054426 108077995 - MGP_AJ_P0097348 Rps6ka6 protein_coding nonsense_mediated_decay MGP_AJ_T0097349.1 MGP_AJ_G0036007.1 mouse_genomes_project X 108054503 108151169 - MGP_AJ_P0097349 Rps6ka6 protein_coding protein_coding MGP_AJ_T0097350.1 MGP_AJ_G0036007.1 mouse_genomes_project X 108061648 108151181 - MGP_AJ_P0097350 Rps6ka6 protein_coding protein_coding MGP_AJ_T0097351.1 MGP_AJ_G0036007.1 mouse_genomes_project X 108065746 108149563 - MGP_AJ_P0097351 Rps6ka6 protein_coding protein_coding MGP_AJ_T0016291.1 MGP_AJ_G0014386.1 mouse_genomes_project X 35169283 35169832 - processed_pseudogene processed_pseudogene MGP_AJ_T0095889.1 MGP_AJ_G0035582.1 mouse_genomes_project X 16084810 16094866 - MGP_AJ_P0095889 Zfp300 protein_coding protein_coding MGP_AJ_T0095890.1 MGP_AJ_G0035582.1 mouse_genomes_project X 16089578 16094623 - Zfp300 protein_coding retained_intron MGP_AJ_T0095891.1 MGP_AJ_G0035582.1 mouse_genomes_project X 16089886 16095164 - Zfp300 protein_coding processed_transcript MGP_AJ_T0016262.1 MGP_AJ_G0014357.1 mouse_genomes_project X 16148589 16153544 + processed_pseudogene processed_pseudogene MGP_AJ_T0016872.1 MGP_AJ_G0014967.1 mouse_genomes_project X 157232281 157232779 + processed_pseudogene processed_pseudogene MGP_AJ_T0009378.1 MGP_AJ_G0007527.1 mouse_genomes_project X 16308219 16336471 - Gm6938 lincRNA lincRNA MGP_AJ_T0096242.1 MGP_AJ_G0035719.1 mouse_genomes_project X 52007343 52008034 + MGP_AJ_P0096242 Gm10477 protein_coding protein_coding MGP_AJ_T0009397.1 MGP_AJ_G0007542.1 mouse_genomes_project X 77224386 77226874 - Gm26775 lincRNA lincRNA MGP_AJ_T0098142.1 MGP_AJ_G0036225.1 mouse_genomes_project X 161634889 161664453 + MGP_AJ_P0098142 Vegfd protein_coding protein_coding MGP_AJ_T0098143.1 MGP_AJ_G0036225.1 mouse_genomes_project X 161652606 161662134 + Vegfd protein_coding retained_intron MGP_AJ_T0016279.1 MGP_AJ_G0014374.1 mouse_genomes_project X 33416740 33417131 + processed_pseudogene processed_pseudogene MGP_AJ_T0011119.1 MGP_AJ_G0009241.1 mouse_genomes_project X 10651203 10651267 + Gm22464 miRNA miRNA MGP_AJ_T0096159.1 MGP_AJ_G0035683.1 mouse_genomes_project X 44024516 44205019 - MGP_AJ_P0096159 Enox2 protein_coding protein_coding MGP_AJ_T0096160.1 MGP_AJ_G0035683.1 mouse_genomes_project X 44079990 44308483 - Enox2 protein_coding processed_transcript MGP_AJ_T0096161.1 MGP_AJ_G0035683.1 mouse_genomes_project X 44083207 44308436 - Enox2 protein_coding processed_transcript MGP_AJ_T0096162.1 MGP_AJ_G0035683.1 mouse_genomes_project X 44087504 44308466 - Enox2 protein_coding processed_transcript MGP_AJ_T0011196.1 MGP_AJ_G0009318.1 mouse_genomes_project X 100706879 100706979 - Mir672 miRNA miRNA MGP_AJ_T0011167.1 MGP_AJ_G0009289.1 mouse_genomes_project X 62576518 62576592 - Mir465 miRNA miRNA MGP_AJ_T0016899.1 MGP_AJ_G0014994.1 mouse_genomes_project X 163473427 163473826 + processed_pseudogene processed_pseudogene MGP_AJ_T0011187.1 MGP_AJ_G0009309.1 mouse_genomes_project X 92785272 92785382 + Mir223 miRNA miRNA MGP_AJ_T0097687.1 MGP_AJ_G0036117.1 mouse_genomes_project X 137890971 137899222 - MGP_AJ_P0097687 Psmd10 protein_coding protein_coding MGP_AJ_T0097410.1 MGP_AJ_G0036033.1 mouse_genomes_project X 123483792 123511342 + MGP_AJ_P0097410 Gm382 protein_coding protein_coding MGP_AJ_T0016811.1 MGP_AJ_G0014906.1 mouse_genomes_project X 143524348 143524825 - processed_pseudogene processed_pseudogene MGP_AJ_T0095852.1 MGP_AJ_G0035573.1 mouse_genomes_project X 15683510 15701112 + MGP_AJ_P0095852 Usp11 protein_coding protein_coding MGP_AJ_T0095853.1 MGP_AJ_G0035573.1 mouse_genomes_project X 15683538 15692758 + Usp11 protein_coding processed_transcript MGP_AJ_T0095854.1 MGP_AJ_G0035573.1 mouse_genomes_project X 15683564 15698258 + Usp11 protein_coding retained_intron MGP_AJ_T0095855.1 MGP_AJ_G0035573.1 mouse_genomes_project X 15691429 15701110 + Usp11 protein_coding retained_intron MGP_AJ_T0095808.1 MGP_AJ_G0035560.1 mouse_genomes_project X 12532852 12550121 - Fundc1 protein_coding processed_transcript MGP_AJ_T0095809.1 MGP_AJ_G0035560.1 mouse_genomes_project X 12532852 12550750 - MGP_AJ_P0095809 Fundc1 protein_coding protein_coding MGP_AJ_T0095810.1 MGP_AJ_G0035560.1 mouse_genomes_project X 12532888 12550799 - MGP_AJ_P0095810 Fundc1 protein_coding protein_coding MGP_AJ_T0095975.1 MGP_AJ_G0035622.1 mouse_genomes_project X 32477361 32482548 + MGP_AJ_P0095975 protein_coding protein_coding MGP_AJ_T0098166.1 MGP_AJ_G0036231.1 mouse_genomes_project X 162385429 162598811 - MGP_AJ_P0098166 Glra2 protein_coding unknown_likely_coding MGP_AJ_T0097404.1 MGP_AJ_G0036028.1 mouse_genomes_project X 118870866 118873701 - MGP_AJ_P0097404 Nap1l3 protein_coding protein_coding MGP_AJ_T0016212.1 MGP_AJ_G0014307.1 mouse_genomes_project X 3805449 3822273 - processed_pseudogene processed_pseudogene MGP_AJ_T0095519.1 MGP_AJ_G0035487.1 mouse_genomes_project X 1717103 1754281 - MGP_AJ_P0095519 Clcn5 protein_coding protein_coding MGP_AJ_T0095520.1 MGP_AJ_G0035487.1 mouse_genomes_project X 1724077 1887587 - MGP_AJ_P0095520 Clcn5 protein_coding protein_coding MGP_AJ_T0095521.1 MGP_AJ_G0035487.1 mouse_genomes_project X 1724785 1754240 - Clcn5 protein_coding retained_intron MGP_AJ_T0095522.1 MGP_AJ_G0035487.1 mouse_genomes_project X 1735803 1887712 - MGP_AJ_P0095522 Clcn5 protein_coding protein_coding MGP_AJ_T0095523.1 MGP_AJ_G0035487.1 mouse_genomes_project X 1778837 1887524 - Clcn5 protein_coding processed_transcript MGP_AJ_T0097906.1 MGP_AJ_G0036160.1 mouse_genomes_project X 149181159 149222413 + MGP_AJ_P0097906 Kdm5c protein_coding protein_coding MGP_AJ_T0097907.1 MGP_AJ_G0036160.1 mouse_genomes_project X 149181368 149223180 + MGP_AJ_P0097907 Kdm5c protein_coding protein_coding MGP_AJ_T0097908.1 MGP_AJ_G0036160.1 mouse_genomes_project X 149181393 149195058 + Kdm5c protein_coding retained_intron MGP_AJ_T0097909.1 MGP_AJ_G0036160.1 mouse_genomes_project X 149181411 149222417 + MGP_AJ_P0097909 Kdm5c protein_coding protein_coding MGP_AJ_T0097910.1 MGP_AJ_G0036160.1 mouse_genomes_project X 149218450 149220201 + MGP_AJ_P0097910 Kdm5c protein_coding protein_coding MGP_AJ_T0097911.1 MGP_AJ_G0036160.1 mouse_genomes_project X 149220557 149222041 + MGP_AJ_P0097911 Kdm5c protein_coding protein_coding MGP_AJ_T0097522.1 MGP_AJ_G0036064.1 mouse_genomes_project X 132334071 132349123 - MGP_AJ_P0097522 Prame protein_coding protein_coding MGP_AJ_T0097523.1 MGP_AJ_G0036064.1 mouse_genomes_project X 132334213 132336875 - MGP_AJ_P0097523 Prame protein_coding protein_coding MGP_AJ_T0096179.1 MGP_AJ_G0035691.1 mouse_genomes_project X 45857753 45917975 + MGP_AJ_P0096179 Stk26 protein_coding protein_coding MGP_AJ_T0096180.1 MGP_AJ_G0035691.1 mouse_genomes_project X 45858147 45903371 + Stk26 protein_coding retained_intron MGP_AJ_T0096181.1 MGP_AJ_G0035691.1 mouse_genomes_project X 45858147 45917975 + MGP_AJ_P0096181 Stk26 protein_coding protein_coding MGP_AJ_T0096182.1 MGP_AJ_G0035691.1 mouse_genomes_project X 45901684 45916722 + Stk26 protein_coding retained_intron MGP_AJ_T0016693.1 MGP_AJ_G0014788.1 mouse_genomes_project X 117459680 117460857 + processed_pseudogene processed_pseudogene MGP_AJ_T0096127.1 MGP_AJ_G0035674.1 mouse_genomes_project X 43357489 43423773 + MGP_AJ_P0096127 Bcorl1 protein_coding protein_coding MGP_AJ_T0096128.1 MGP_AJ_G0035674.1 mouse_genomes_project X 43357757 43379293 + Bcorl1 protein_coding processed_transcript MGP_AJ_T0096129.1 MGP_AJ_G0035674.1 mouse_genomes_project X 43378406 43395984 + MGP_AJ_P0096129 Bcorl1 protein_coding nonsense_mediated_decay MGP_AJ_T0096130.1 MGP_AJ_G0035674.1 mouse_genomes_project X 43386125 43400849 + MGP_AJ_P0096130 Bcorl1 protein_coding protein_coding MGP_AJ_T0016597.1 MGP_AJ_G0014692.1 mouse_genomes_project X 100069285 100069686 + processed_pseudogene processed_pseudogene MGP_AJ_T0011121.1 MGP_AJ_G0009243.1 mouse_genomes_project X 14165817 14165896 - Mir222 miRNA miRNA MGP_AJ_T0016661.1 MGP_AJ_G0014756.1 mouse_genomes_project X 111062965 111064326 + processed_pseudogene processed_pseudogene MGP_AJ_T0100370.1 MGP_AJ_G0038336.1 mouse_genomes_project X 109896098 109896224 - Gm24831 snRNA snRNA MGP_AJ_T0011118.1 MGP_AJ_G0009240.1 mouse_genomes_project X 8606986 8607055 + Gm25246 miRNA miRNA MGP_AJ_T0101662.1 MGP_AJ_G0039628.1 mouse_genomes_project X 161545364 161545494 + Gm22023 snoRNA snoRNA MGP_AJ_T0016887.1 MGP_AJ_G0014982.1 mouse_genomes_project X 160130252 160130652 - processed_pseudogene processed_pseudogene MGP_AJ_T0101615.1 MGP_AJ_G0039581.1 mouse_genomes_project X 64400925 64401053 - Gm22435 snoRNA snoRNA MGP_AJ_T0101620.1 MGP_AJ_G0039586.1 mouse_genomes_project X 70620436 70620571 + Gm26417 snoRNA snoRNA MGP_AJ_T0098135.1 MGP_AJ_G0036223.1 mouse_genomes_project X 161454207 161520702 - MGP_AJ_P0098135 Bmx protein_coding protein_coding MGP_AJ_T0098136.1 MGP_AJ_G0036223.1 mouse_genomes_project X 161454720 161512889 - MGP_AJ_P0098136 Bmx protein_coding protein_coding MGP_AJ_T0097129.1 MGP_AJ_G0035944.1 mouse_genomes_project X 97885180 97894422 + MGP_AJ_P0097129 Gjb1 protein_coding protein_coding MGP_AJ_T0097130.1 MGP_AJ_G0035944.1 mouse_genomes_project X 97886075 97894422 + MGP_AJ_P0097130 Gjb1 protein_coding protein_coding MGP_AJ_T0097131.1 MGP_AJ_G0035944.1 mouse_genomes_project X 97892528 97894422 + MGP_AJ_P0097131 Gjb1 protein_coding protein_coding MGP_AJ_T0096907.1 MGP_AJ_G0035888.1 mouse_genomes_project X 89749092 89751030 + Arx protein_coding retained_intron MGP_AJ_T0096908.1 MGP_AJ_G0035888.1 mouse_genomes_project X 89749143 89761056 + MGP_AJ_P0096908 Arx protein_coding protein_coding MGP_AJ_T0096909.1 MGP_AJ_G0035888.1 mouse_genomes_project X 89749157 89760761 + MGP_AJ_P0096909 Arx protein_coding protein_coding MGP_AJ_T0016768.1 MGP_AJ_G0014863.1 mouse_genomes_project X 138300736 138301009 + processed_pseudogene processed_pseudogene MGP_AJ_T0101663.1 MGP_AJ_G0039629.1 mouse_genomes_project X 164674322 164674440 - Gm26368 snoRNA snoRNA MGP_AJ_T0016451.1 MGP_AJ_G0014546.1 mouse_genomes_project X 73785664 73786264 - processed_pseudogene processed_pseudogene MGP_AJ_T0016408.1 MGP_AJ_G0014503.1 mouse_genomes_project X 64640755 64641611 - processed_pseudogene processed_pseudogene MGP_AJ_T0097560.1 MGP_AJ_G0036077.1 mouse_genomes_project X 132982300 132993000 + MGP_AJ_P0097560 Tceal7 protein_coding protein_coding MGP_AJ_T0097561.1 MGP_AJ_G0036077.1 mouse_genomes_project X 132991653 132993713 + MGP_AJ_P0097561 Tceal7 protein_coding protein_coding MGP_AJ_T0016396.1 MGP_AJ_G0014491.1 mouse_genomes_project X 62727065 62727594 + processed_pseudogene processed_pseudogene MGP_AJ_T0096573.1 MGP_AJ_G0035810.1 mouse_genomes_project X 69992123 70002977 - MGP_AJ_P0096573 Irak1 protein_coding protein_coding MGP_AJ_T0096574.1 MGP_AJ_G0035810.1 mouse_genomes_project X 69992127 70002974 - MGP_AJ_P0096574 Irak1 protein_coding protein_coding MGP_AJ_T0096575.1 MGP_AJ_G0035810.1 mouse_genomes_project X 69992135 70002974 - MGP_AJ_P0096575 Irak1 protein_coding protein_coding MGP_AJ_T0096576.1 MGP_AJ_G0035810.1 mouse_genomes_project X 69992135 70002974 - MGP_AJ_P0096576 Irak1 protein_coding protein_coding MGP_AJ_T0096577.1 MGP_AJ_G0035810.1 mouse_genomes_project X 69993014 70002885 - Irak1 protein_coding retained_intron MGP_AJ_T0096578.1 MGP_AJ_G0035810.1 mouse_genomes_project X 69993014 70002885 - Irak1 protein_coding retained_intron MGP_AJ_T0096579.1 MGP_AJ_G0035810.1 mouse_genomes_project X 69993179 70002972 - MGP_AJ_P0096579 Irak1 protein_coding protein_coding MGP_AJ_T0096580.1 MGP_AJ_G0035810.1 mouse_genomes_project X 69993566 69996557 - MGP_AJ_P0096580 Irak1 protein_coding protein_coding MGP_AJ_T0096581.1 MGP_AJ_G0035810.1 mouse_genomes_project X 69993580 69998164 - MGP_AJ_P0096581 Irak1 protein_coding protein_coding MGP_AJ_T0096582.1 MGP_AJ_G0035810.1 mouse_genomes_project X 69993648 70002804 - MGP_AJ_P0096582 Irak1 protein_coding protein_coding MGP_AJ_T0096583.1 MGP_AJ_G0035810.1 mouse_genomes_project X 69993648 70002804 - MGP_AJ_P0096583 Irak1 protein_coding protein_coding MGP_AJ_T0096584.1 MGP_AJ_G0035810.1 mouse_genomes_project X 69994756 69999211 - MGP_AJ_P0096584 Irak1 protein_coding protein_coding MGP_AJ_T0096585.1 MGP_AJ_G0035810.1 mouse_genomes_project X 69995334 70000720 - MGP_AJ_P0096585 Irak1 protein_coding protein_coding MGP_AJ_T0096586.1 MGP_AJ_G0035810.1 mouse_genomes_project X 69999222 70000875 - Irak1 protein_coding retained_intron MGP_AJ_T0096587.1 MGP_AJ_G0035810.1 mouse_genomes_project X 69999222 70001315 - MGP_AJ_P0096587 Irak1 protein_coding protein_coding MGP_AJ_T0096588.1 MGP_AJ_G0035810.1 mouse_genomes_project X 70000410 70001397 - MGP_AJ_P0096588 Irak1 protein_coding protein_coding MGP_AJ_T0096589.1 MGP_AJ_G0035810.1 mouse_genomes_project X 70000452 70001168 - MGP_AJ_P0096589 Irak1 protein_coding protein_coding MGP_AJ_T0096590.1 MGP_AJ_G0035810.1 mouse_genomes_project X 70000461 70002786 - Irak1 protein_coding processed_transcript MGP_AJ_T0096591.1 MGP_AJ_G0035810.1 mouse_genomes_project X 70000841 70002867 - Irak1 protein_coding retained_intron MGP_AJ_T0096592.1 MGP_AJ_G0035810.1 mouse_genomes_project X 70000856 70002435 - Irak1 protein_coding retained_intron MGP_AJ_T0096593.1 MGP_AJ_G0035810.1 mouse_genomes_project X 70000969 70002567 - Irak1 protein_coding processed_transcript MGP_AJ_T0096594.1 MGP_AJ_G0035810.1 mouse_genomes_project X 70001318 70002890 - Irak1 protein_coding retained_intron MGP_AJ_T0016455.1 MGP_AJ_G0014550.1 mouse_genomes_project X 74507389 74507720 - processed_pseudogene processed_pseudogene MGP_AJ_T0095983.1 MGP_AJ_G0035628.1 mouse_genomes_project X 32623863 32625031 + MGP_AJ_P0095983 protein_coding protein_coding MGP_AJ_T0016354.1 MGP_AJ_G0014449.1 mouse_genomes_project X 53757200 53757524 - processed_pseudogene processed_pseudogene MGP_AJ_T0016412.1 MGP_AJ_G0014507.1 mouse_genomes_project X 66189308 66190232 - processed_pseudogene processed_pseudogene MGP_AJ_T0098225.1 MGP_AJ_G0036247.1 mouse_genomes_project X 166587601 166651012 - MGP_AJ_P0098225 Hccs protein_coding nonsense_mediated_decay MGP_AJ_T0098226.1 MGP_AJ_G0036247.1 mouse_genomes_project X 166642169 166650920 - MGP_AJ_P0098226 Hccs protein_coding protein_coding MGP_AJ_T0098227.1 MGP_AJ_G0036247.1 mouse_genomes_project X 166642169 166650934 - MGP_AJ_P0098227 Hccs protein_coding protein_coding MGP_AJ_T0095567.1 MGP_AJ_G0035498.1 mouse_genomes_project X 2299221 2303532 + MGP_AJ_P0095567 Wdr45 protein_coding protein_coding MGP_AJ_T0095568.1 MGP_AJ_G0035498.1 mouse_genomes_project X 2299468 2305440 + MGP_AJ_P0095568 Wdr45 protein_coding protein_coding MGP_AJ_T0095569.1 MGP_AJ_G0035498.1 mouse_genomes_project X 2299488 2305230 + MGP_AJ_P0095569 Wdr45 protein_coding protein_coding MGP_AJ_T0095570.1 MGP_AJ_G0035498.1 mouse_genomes_project X 2299497 2305441 + MGP_AJ_P0095570 Wdr45 protein_coding protein_coding MGP_AJ_T0095571.1 MGP_AJ_G0035498.1 mouse_genomes_project X 2299498 2303532 + MGP_AJ_P0095571 Wdr45 protein_coding protein_coding MGP_AJ_T0095572.1 MGP_AJ_G0035498.1 mouse_genomes_project X 2299498 2305422 + MGP_AJ_P0095572 Wdr45 protein_coding protein_coding MGP_AJ_T0095573.1 MGP_AJ_G0035498.1 mouse_genomes_project X 2299508 2305190 + MGP_AJ_P0095573 Wdr45 protein_coding protein_coding MGP_AJ_T0095574.1 MGP_AJ_G0035498.1 mouse_genomes_project X 2299603 2301531 + MGP_AJ_P0095574 Wdr45 protein_coding protein_coding MGP_AJ_T0095575.1 MGP_AJ_G0035498.1 mouse_genomes_project X 2299605 2303516 + MGP_AJ_P0095575 Wdr45 protein_coding nonsense_mediated_decay MGP_AJ_T0095576.1 MGP_AJ_G0035498.1 mouse_genomes_project X 2299610 2303531 + MGP_AJ_P0095576 Wdr45 protein_coding protein_coding MGP_AJ_T0095577.1 MGP_AJ_G0035498.1 mouse_genomes_project X 2299981 2303572 + Wdr45 protein_coding processed_transcript MGP_AJ_T0095578.1 MGP_AJ_G0035498.1 mouse_genomes_project X 2300175 2305243 + MGP_AJ_P0095578 Wdr45 protein_coding protein_coding MGP_AJ_T0095579.1 MGP_AJ_G0035498.1 mouse_genomes_project X 2300570 2303267 + MGP_AJ_P0095579 Wdr45 protein_coding protein_coding MGP_AJ_T0095580.1 MGP_AJ_G0035498.1 mouse_genomes_project X 2300784 2303120 + Wdr45 protein_coding processed_transcript MGP_AJ_T0095581.1 MGP_AJ_G0035498.1 mouse_genomes_project X 2303812 2304730 + Wdr45 protein_coding processed_transcript MGP_AJ_T0096348.1 MGP_AJ_G0035756.1 mouse_genomes_project X 64483348 64529037 + MGP_AJ_P0096348 Fmr1nb protein_coding protein_coding MGP_AJ_T0096349.1 MGP_AJ_G0035756.1 mouse_genomes_project X 64483390 64529037 + MGP_AJ_P0096349 Fmr1nb protein_coding protein_coding MGP_AJ_T0096350.1 MGP_AJ_G0035756.1 mouse_genomes_project X 64483443 64529037 + MGP_AJ_P0096350 Fmr1nb protein_coding protein_coding MGP_AJ_T0016808.1 MGP_AJ_G0014903.1 mouse_genomes_project X 143130891 143131937 + processed_pseudogene processed_pseudogene MGP_AJ_T0098770.1 MGP_AJ_G0036754.1 mouse_genomes_project X 64668028 64668149 - n-R5s7 rRNA rRNA MGP_AJ_T0101897.1 MGP_AJ_G0039764.1 mouse_genomes_project X 18353701 18354259 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0018605.1 MGP_AJ_G0015749.1 mouse_genomes_project X 7691996 7754154 + Gm14634 processed_transcript processed_transcript MGP_AJ_T0018606.1 MGP_AJ_G0015749.1 mouse_genomes_project X 7692262 7750881 + Gm14634 processed_transcript processed_transcript MGP_AJ_T0016477.1 MGP_AJ_G0014572.1 mouse_genomes_project X 78856817 78857786 - processed_pseudogene processed_pseudogene MGP_AJ_T0102962.1 MGP_AJ_G0040702.1 mouse_genomes_project X 99501978 99503771 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0102930.1 MGP_AJ_G0040670.1 mouse_genomes_project X 4166962 4167216 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0096036.1 MGP_AJ_G0035653.1 mouse_genomes_project X 33658653 33662956 - MGP_AJ_P0096036 C1galt1c1 protein_coding protein_coding MGP_AJ_T0016640.1 MGP_AJ_G0014735.1 mouse_genomes_project X 107287136 107288280 + processed_pseudogene processed_pseudogene MGP_AJ_T0016798.1 MGP_AJ_G0014893.1 mouse_genomes_project X 142119246 142119880 - processed_pseudogene processed_pseudogene MGP_AJ_T0016706.1 MGP_AJ_G0014801.1 mouse_genomes_project X 124523627 124526275 - processed_pseudogene processed_pseudogene MGP_AJ_T0009368.1 MGP_AJ_G0007522.1 mouse_genomes_project X 8172839 8174482 - 2010308F09Rik lincRNA lincRNA MGP_AJ_T0009369.1 MGP_AJ_G0007522.1 mouse_genomes_project X 8172882 8186525 - 2010308F09Rik lincRNA lincRNA MGP_AJ_T0097166.1 MGP_AJ_G0035949.1 mouse_genomes_project X 98156302 98201061 + MGP_AJ_P0097166 Ogt protein_coding protein_coding MGP_AJ_T0097167.1 MGP_AJ_G0035949.1 mouse_genomes_project X 98156304 98169195 + Ogt protein_coding retained_intron MGP_AJ_T0097168.1 MGP_AJ_G0035949.1 mouse_genomes_project X 98156306 98202472 + MGP_AJ_P0097168 Ogt protein_coding protein_coding MGP_AJ_T0097169.1 MGP_AJ_G0035949.1 mouse_genomes_project X 98156336 98170636 + Ogt protein_coding processed_transcript MGP_AJ_T0097170.1 MGP_AJ_G0035949.1 mouse_genomes_project X 98156350 98170904 + Ogt protein_coding retained_intron MGP_AJ_T0097171.1 MGP_AJ_G0035949.1 mouse_genomes_project X 98156382 98169212 + Ogt protein_coding retained_intron MGP_AJ_T0097172.1 MGP_AJ_G0035949.1 mouse_genomes_project X 98171662 98201279 + Ogt protein_coding processed_transcript MGP_AJ_T0011773.1 MGP_AJ_G0009895.1 mouse_genomes_project X 129241811 129242014 + Gm22143 misc_RNA misc_RNA MGP_AJ_T0102933.1 MGP_AJ_G0040673.1 mouse_genomes_project X 14498545 14499155 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0097101.1 MGP_AJ_G0035937.1 mouse_genomes_project X 97596127 97726698 - MGP_AJ_P0097101 Snx12 protein_coding protein_coding MGP_AJ_T0097102.1 MGP_AJ_G0035937.1 mouse_genomes_project X 97716146 97726708 - MGP_AJ_P0097102 Snx12 protein_coding protein_coding MGP_AJ_T0097103.1 MGP_AJ_G0035937.1 mouse_genomes_project X 97716146 97726694 - MGP_AJ_P0097103 Snx12 protein_coding protein_coding MGP_AJ_T0097104.1 MGP_AJ_G0035937.1 mouse_genomes_project X 97717640 97718693 - Snx12 protein_coding processed_transcript MGP_AJ_T0096186.1 MGP_AJ_G0035694.1 mouse_genomes_project X 46147715 46243089 - MGP_AJ_P0096186 Mbnl3 protein_coding protein_coding MGP_AJ_T0096187.1 MGP_AJ_G0035694.1 mouse_genomes_project X 46150528 46243247 - MGP_AJ_P0096187 Mbnl3 protein_coding protein_coding MGP_AJ_T0096188.1 MGP_AJ_G0035694.1 mouse_genomes_project X 46150528 46178505 - MGP_AJ_P0096188 Mbnl3 protein_coding protein_coding MGP_AJ_T0096189.1 MGP_AJ_G0035694.1 mouse_genomes_project X 46150900 46158159 - Mbnl3 protein_coding retained_intron MGP_AJ_T0096190.1 MGP_AJ_G0035694.1 mouse_genomes_project X 46150937 46197978 - MGP_AJ_P0096190 Mbnl3 protein_coding protein_coding MGP_AJ_T0096191.1 MGP_AJ_G0035694.1 mouse_genomes_project X 46151333 46171317 - Mbnl3 protein_coding processed_transcript MGP_AJ_T0096192.1 MGP_AJ_G0035694.1 mouse_genomes_project X 46197720 46243789 - Mbnl3 protein_coding processed_transcript MGP_AJ_T0102972.1 MGP_AJ_G0040712.1 mouse_genomes_project X 151289124 151289607 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0016247.1 MGP_AJ_G0014342.1 mouse_genomes_project X 13367018 13367175 + processed_pseudogene processed_pseudogene MGP_AJ_T0097431.1 MGP_AJ_G0036041.1 mouse_genomes_project X 130509615 130533943 - MGP_AJ_P0097431 Sytl4 protein_coding protein_coding MGP_AJ_T0097432.1 MGP_AJ_G0036041.1 mouse_genomes_project X 130518162 130553531 - MGP_AJ_P0097432 Sytl4 protein_coding protein_coding MGP_AJ_T0097433.1 MGP_AJ_G0036041.1 mouse_genomes_project X 130522020 130532698 - Sytl4 protein_coding processed_transcript MGP_AJ_T0097434.1 MGP_AJ_G0036041.1 mouse_genomes_project X 130524044 130553528 - MGP_AJ_P0097434 Sytl4 protein_coding protein_coding MGP_AJ_T0018640.1 MGP_AJ_G0015761.1 mouse_genomes_project X 97800860 97826284 + Gm21986 processed_transcript processed_transcript MGP_AJ_T0016676.1 MGP_AJ_G0014771.1 mouse_genomes_project X 114065628 114067314 + processed_pseudogene processed_pseudogene MGP_AJ_T0096261.1 MGP_AJ_G0035725.1 mouse_genomes_project X 52373613 52485936 + MGP_AJ_P0096261 protein_coding protein_coding MGP_AJ_T0096262.1 MGP_AJ_G0035725.1 mouse_genomes_project X 52378664 52485968 + MGP_AJ_P0096262 protein_coding protein_coding MGP_AJ_T0096263.1 MGP_AJ_G0035725.1 mouse_genomes_project X 52399166 52510830 + MGP_AJ_P0096263 protein_coding protein_coding MGP_AJ_T0096264.1 MGP_AJ_G0035725.1 mouse_genomes_project X 52418466 52418997 + MGP_AJ_P0096264 protein_coding protein_coding MGP_AJ_T0096265.1 MGP_AJ_G0035725.1 mouse_genomes_project X 52470514 52485951 + MGP_AJ_P0096265 protein_coding protein_coding MGP_AJ_T0096266.1 MGP_AJ_G0035725.1 mouse_genomes_project X 52474004 52485958 + MGP_AJ_P0096266 protein_coding protein_coding MGP_AJ_T0095510.1 MGP_AJ_G0035482.1 mouse_genomes_project X 928257 934872 - MGP_AJ_P0095510 Bmp15 protein_coding protein_coding MGP_AJ_T0098855.1 MGP_AJ_G0036839.1 mouse_genomes_project X 30837505 30837780 + Gm25624 scaRNA scaRNA MGP_AJ_T0098124.1 MGP_AJ_G0036219.1 mouse_genomes_project X 161223304 161276368 - MGP_AJ_P0098124 Car5b protein_coding protein_coding MGP_AJ_T0098125.1 MGP_AJ_G0036219.1 mouse_genomes_project X 161261407 161276352 - Car5b protein_coding retained_intron MGP_AJ_T0095691.1 MGP_AJ_G0035521.1 mouse_genomes_project X 2821964 2831148 - MGP_AJ_P0095691 Porcn protein_coding unknown_likely_coding MGP_AJ_T0095692.1 MGP_AJ_G0035521.1 mouse_genomes_project X 2822136 2836008 - MGP_AJ_P0095692 Porcn protein_coding protein_coding MGP_AJ_T0095693.1 MGP_AJ_G0035521.1 mouse_genomes_project X 2822137 2835974 - MGP_AJ_P0095693 Porcn protein_coding nonsense_mediated_decay MGP_AJ_T0095694.1 MGP_AJ_G0035521.1 mouse_genomes_project X 2822138 2835984 - MGP_AJ_P0095694 Porcn protein_coding protein_coding MGP_AJ_T0095695.1 MGP_AJ_G0035521.1 mouse_genomes_project X 2822138 2835984 - MGP_AJ_P0095695 Porcn protein_coding protein_coding MGP_AJ_T0095696.1 MGP_AJ_G0035521.1 mouse_genomes_project X 2822138 2835984 - MGP_AJ_P0095696 Porcn protein_coding protein_coding MGP_AJ_T0095697.1 MGP_AJ_G0035521.1 mouse_genomes_project X 2822141 2835980 - MGP_AJ_P0095697 Porcn protein_coding nonsense_mediated_decay MGP_AJ_T0095698.1 MGP_AJ_G0035521.1 mouse_genomes_project X 2832921 2835996 - Porcn protein_coding retained_intron MGP_AJ_T0097751.1 MGP_AJ_G0036136.1 mouse_genomes_project X 141248393 141578882 - MGP_AJ_P0097751 Trpc5 protein_coding protein_coding MGP_AJ_T0097752.1 MGP_AJ_G0036136.1 mouse_genomes_project X 141286448 141578705 - Trpc5 protein_coding retained_intron MGP_AJ_T0098076.1 MGP_AJ_G0036208.1 mouse_genomes_project X 159046063 159397189 - MGP_AJ_P0098076 Nhs protein_coding protein_coding MGP_AJ_T0098077.1 MGP_AJ_G0036208.1 mouse_genomes_project X 159049582 159396847 - MGP_AJ_P0098077 Nhs protein_coding protein_coding MGP_AJ_T0098211.1 MGP_AJ_G0036244.1 mouse_genomes_project X 166058541 166059808 - MGP_AJ_P0098211 protein_coding protein_coding MGP_AJ_T0097499.1 MGP_AJ_G0036057.1 mouse_genomes_project X 131441614 131444993 - MGP_AJ_P0097499 Armcx2 protein_coding protein_coding MGP_AJ_T0097500.1 MGP_AJ_G0036057.1 mouse_genomes_project X 131441616 131446688 - MGP_AJ_P0097500 Armcx2 protein_coding protein_coding MGP_AJ_T0097501.1 MGP_AJ_G0036057.1 mouse_genomes_project X 131441616 131446463 - MGP_AJ_P0097501 Armcx2 protein_coding protein_coding MGP_AJ_T0097502.1 MGP_AJ_G0036057.1 mouse_genomes_project X 131441616 131446688 - MGP_AJ_P0097502 Armcx2 protein_coding protein_coding MGP_AJ_T0097503.1 MGP_AJ_G0036057.1 mouse_genomes_project X 131443954 131444979 - Armcx2 protein_coding processed_transcript MGP_AJ_T0097504.1 MGP_AJ_G0036057.1 mouse_genomes_project X 131444729 131445410 - Armcx2 protein_coding processed_transcript MGP_AJ_T0097505.1 MGP_AJ_G0036057.1 mouse_genomes_project X 131445354 131446428 - Armcx2 protein_coding processed_transcript MGP_AJ_T0096205.1 MGP_AJ_G0035700.1 mouse_genomes_project X 47869266 47877540 + MGP_AJ_P0096205 Ccdc160 protein_coding protein_coding MGP_AJ_T0097589.1 MGP_AJ_G0036089.1 mouse_genomes_project X 133798516 133801376 - MGP_AJ_P0097589 Tmsb15b1 protein_coding protein_coding MGP_AJ_T0096185.1 MGP_AJ_G0035693.1 mouse_genomes_project X 46037302 46051391 - MGP_AJ_P0096185 Rap2c protein_coding protein_coding MGP_AJ_T0016406.1 MGP_AJ_G0014501.1 mouse_genomes_project X 64344722 64345990 + processed_pseudogene processed_pseudogene MGP_AJ_T0016738.1 MGP_AJ_G0014833.1 mouse_genomes_project X 133115567 133116112 + processed_pseudogene processed_pseudogene MGP_AJ_T0100345.1 MGP_AJ_G0038311.1 mouse_genomes_project X 55817391 55817498 + Gm22287 snRNA snRNA MGP_AJ_T0016825.1 MGP_AJ_G0014920.1 mouse_genomes_project X 148701505 148701682 - processed_pseudogene processed_pseudogene MGP_AJ_T0011162.1 MGP_AJ_G0009284.1 mouse_genomes_project X 62549515 62549593 - Mir878 miRNA miRNA MGP_AJ_T0102941.1 MGP_AJ_G0040681.1 mouse_genomes_project X 51336024 51344176 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0016570.1 MGP_AJ_G0014665.1 mouse_genomes_project X 97557689 97557972 + processed_pseudogene processed_pseudogene MGP_AJ_T0100374.1 MGP_AJ_G0038340.1 mouse_genomes_project X 124360750 124360857 - Gm25061 snRNA snRNA MGP_AJ_T0095888.1 MGP_AJ_G0035581.1 mouse_genomes_project X 16065154 16070181 + MGP_AJ_P0095888 Spaca5 protein_coding protein_coding MGP_AJ_T0011145.1 MGP_AJ_G0009267.1 mouse_genomes_project X 48145820 48145919 - Mir351 miRNA miRNA MGP_AJ_T0011130.1 MGP_AJ_G0009252.1 mouse_genomes_project X 36976266 36976393 + Gm44490 miRNA miRNA MGP_AJ_T0096643.1 MGP_AJ_G0035818.1 mouse_genomes_project X 70255522 70265732 - MGP_AJ_P0096643 Dnase1l1 protein_coding protein_coding MGP_AJ_T0096644.1 MGP_AJ_G0035818.1 mouse_genomes_project X 70255523 70266333 - MGP_AJ_P0096644 Dnase1l1 protein_coding protein_coding MGP_AJ_T0096645.1 MGP_AJ_G0035818.1 mouse_genomes_project X 70255624 70265594 - MGP_AJ_P0096645 Dnase1l1 protein_coding protein_coding MGP_AJ_T0096646.1 MGP_AJ_G0035818.1 mouse_genomes_project X 70256278 70265671 - MGP_AJ_P0096646 Dnase1l1 protein_coding protein_coding MGP_AJ_T0096647.1 MGP_AJ_G0035818.1 mouse_genomes_project X 70256673 70259248 - Dnase1l1 protein_coding retained_intron MGP_AJ_T0096648.1 MGP_AJ_G0035818.1 mouse_genomes_project X 70259186 70265622 - Dnase1l1 protein_coding retained_intron MGP_AJ_T0016704.1 MGP_AJ_G0014799.1 mouse_genomes_project X 123404768 123405023 + processed_pseudogene processed_pseudogene MGP_AJ_T0016802.1 MGP_AJ_G0014897.1 mouse_genomes_project X 142623336 142623794 - processed_pseudogene processed_pseudogene MGP_AJ_T0097939.1 MGP_AJ_G0036173.1 mouse_genomes_project X 150570303 150571134 + MGP_AJ_P0097939 Cypt3 protein_coding protein_coding MGP_AJ_T0097940.1 MGP_AJ_G0036173.1 mouse_genomes_project X 150570303 150571140 + MGP_AJ_P0097940 Cypt3 protein_coding protein_coding MGP_AJ_T0098768.1 MGP_AJ_G0036752.1 mouse_genomes_project X 16728901 16728980 + Gm25553 rRNA rRNA MGP_AJ_T0097632.1 MGP_AJ_G0036102.1 mouse_genomes_project X 136357639 136434191 + MGP_AJ_P0097632 D330045A20Rik protein_coding protein_coding MGP_AJ_T0097633.1 MGP_AJ_G0036102.1 mouse_genomes_project X 136357643 136373771 + D330045A20Rik protein_coding processed_transcript MGP_AJ_T0097634.1 MGP_AJ_G0036102.1 mouse_genomes_project X 136357643 136434191 + MGP_AJ_P0097634 D330045A20Rik protein_coding protein_coding MGP_AJ_T0016316.1 MGP_AJ_G0014411.1 mouse_genomes_project X 41451666 41452074 - processed_pseudogene processed_pseudogene MGP_AJ_T0100365.1 MGP_AJ_G0038331.1 mouse_genomes_project X 103232976 103233138 - Gm24622 snRNA snRNA MGP_AJ_T0096894.1 MGP_AJ_G0035879.1 mouse_genomes_project X 82958661 84364088 - MGP_AJ_P0096894 Il1rapl1 protein_coding protein_coding MGP_AJ_T0096895.1 MGP_AJ_G0035879.1 mouse_genomes_project X 82965032 84134130 - MGP_AJ_P0096895 Il1rapl1 protein_coding protein_coding MGP_AJ_T0096896.1 MGP_AJ_G0035879.1 mouse_genomes_project X 82987287 84364088 - MGP_AJ_P0096896 Il1rapl1 protein_coding protein_coding MGP_AJ_T0095856.1 MGP_AJ_G0035574.1 mouse_genomes_project X 15777167 15842283 + MGP_AJ_P0095856 Araf protein_coding nonsense_mediated_decay MGP_AJ_T0095857.1 MGP_AJ_G0035574.1 mouse_genomes_project X 15829805 15842305 + MGP_AJ_P0095857 Araf protein_coding protein_coding MGP_AJ_T0095858.1 MGP_AJ_G0035574.1 mouse_genomes_project X 15829826 15837243 + Araf protein_coding retained_intron MGP_AJ_T0095859.1 MGP_AJ_G0035574.1 mouse_genomes_project X 15829828 15834650 + MGP_AJ_P0095859 Araf protein_coding protein_coding MGP_AJ_T0095860.1 MGP_AJ_G0035574.1 mouse_genomes_project X 15829837 15836306 + Araf protein_coding processed_transcript MGP_AJ_T0095861.1 MGP_AJ_G0035574.1 mouse_genomes_project X 15829840 15834635 + MGP_AJ_P0095861 Araf protein_coding protein_coding MGP_AJ_T0095862.1 MGP_AJ_G0035574.1 mouse_genomes_project X 15829844 15833463 + Araf protein_coding retained_intron MGP_AJ_T0095863.1 MGP_AJ_G0035574.1 mouse_genomes_project X 15829851 15835196 + MGP_AJ_P0095863 Araf protein_coding protein_coding MGP_AJ_T0095864.1 MGP_AJ_G0035574.1 mouse_genomes_project X 15832875 15833960 + Araf protein_coding retained_intron MGP_AJ_T0095865.1 MGP_AJ_G0035574.1 mouse_genomes_project X 15835163 15841899 + MGP_AJ_P0095865 Araf protein_coding unknown_likely_coding MGP_AJ_T0095866.1 MGP_AJ_G0035574.1 mouse_genomes_project X 15839508 15841994 + MGP_AJ_P0095866 Araf protein_coding protein_coding MGP_AJ_T0016721.1 MGP_AJ_G0014816.1 mouse_genomes_project X 129449141 129450193 - processed_pseudogene processed_pseudogene MGP_AJ_T0016522.1 MGP_AJ_G0014617.1 mouse_genomes_project X 88913561 88913737 + processed_pseudogene processed_pseudogene MGP_AJ_T0102951.1 MGP_AJ_G0040691.1 mouse_genomes_project X 74194088 74205734 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0097359.1 MGP_AJ_G0036011.1 mouse_genomes_project X 108921805 108985226 + MGP_AJ_P0097359 Apool protein_coding protein_coding MGP_AJ_T0097360.1 MGP_AJ_G0036011.1 mouse_genomes_project X 108921819 108961274 + Apool protein_coding retained_intron MGP_AJ_T0097361.1 MGP_AJ_G0036011.1 mouse_genomes_project X 108921837 108984906 + MGP_AJ_P0097361 Apool protein_coding protein_coding MGP_AJ_T0100368.1 MGP_AJ_G0038334.1 mouse_genomes_project X 105731320 105731427 - Gm25797 snRNA snRNA MGP_AJ_T0016879.1 MGP_AJ_G0014974.1 mouse_genomes_project X 158701024 158701943 - processed_pseudogene processed_pseudogene MGP_AJ_T0011190.1 MGP_AJ_G0009312.1 mouse_genomes_project X 98545499 98545603 - Gm27843 miRNA miRNA MGP_AJ_T0097485.1 MGP_AJ_G0036055.1 mouse_genomes_project X 131333565 131337481 + MGP_AJ_P0097485 Armcx1 protein_coding protein_coding MGP_AJ_T0097486.1 MGP_AJ_G0036055.1 mouse_genomes_project X 131333572 131337490 + MGP_AJ_P0097486 Armcx1 protein_coding protein_coding MGP_AJ_T0097487.1 MGP_AJ_G0036055.1 mouse_genomes_project X 131333590 131334923 + Armcx1 protein_coding processed_transcript MGP_AJ_T0097488.1 MGP_AJ_G0036055.1 mouse_genomes_project X 131333590 131337483 + MGP_AJ_P0097488 Armcx1 protein_coding protein_coding MGP_AJ_T0097489.1 MGP_AJ_G0036055.1 mouse_genomes_project X 131333591 131337490 + MGP_AJ_P0097489 Armcx1 protein_coding protein_coding MGP_AJ_T0097490.1 MGP_AJ_G0036055.1 mouse_genomes_project X 131333605 131335117 + Armcx1 protein_coding processed_transcript MGP_AJ_T0097491.1 MGP_AJ_G0036055.1 mouse_genomes_project X 131333605 131334638 + Armcx1 protein_coding processed_transcript MGP_AJ_T0097492.1 MGP_AJ_G0036055.1 mouse_genomes_project X 131333615 131337481 + MGP_AJ_P0097492 Armcx1 protein_coding protein_coding MGP_AJ_T0097493.1 MGP_AJ_G0036055.1 mouse_genomes_project X 131333622 131337490 + MGP_AJ_P0097493 Armcx1 protein_coding protein_coding MGP_AJ_T0097494.1 MGP_AJ_G0036055.1 mouse_genomes_project X 131334866 131336077 + Armcx1 protein_coding processed_transcript MGP_AJ_T0016781.1 MGP_AJ_G0014876.1 mouse_genomes_project X 139116867 139117125 + processed_pseudogene processed_pseudogene MGP_AJ_T0016494.1 MGP_AJ_G0014589.1 mouse_genomes_project X 84678094 84678436 + processed_pseudogene processed_pseudogene MGP_AJ_T0016298.1 MGP_AJ_G0014393.1 mouse_genomes_project X 36943014 36943680 + processed_pseudogene processed_pseudogene MGP_AJ_T0100341.1 MGP_AJ_G0038307.1 mouse_genomes_project X 52240569 52240675 + Gm23258 snRNA snRNA MGP_AJ_T0016400.1 MGP_AJ_G0014495.1 mouse_genomes_project X 63752447 63752750 - processed_pseudogene processed_pseudogene MGP_AJ_T0009433.1 MGP_AJ_G0007565.1 mouse_genomes_project X 137719882 137741883 + Eif2c5 lincRNA lincRNA MGP_AJ_T0016516.1 MGP_AJ_G0014611.1 mouse_genomes_project X 87987048 87987997 - processed_pseudogene processed_pseudogene MGP_AJ_T0011759.1 MGP_AJ_G0009881.1 mouse_genomes_project X 64395239 64395367 + Gm27838 misc_RNA misc_RNA MGP_AJ_T0100329.1 MGP_AJ_G0038295.1 mouse_genomes_project X 17827723 17827833 + Gm26131 snRNA snRNA MGP_AJ_T0097383.1 MGP_AJ_G0036018.1 mouse_genomes_project X 111046905 111119018 + MGP_AJ_P0097383 Klhl4 protein_coding protein_coding MGP_AJ_T0097384.1 MGP_AJ_G0036018.1 mouse_genomes_project X 111046905 111119018 + MGP_AJ_P0097384 Klhl4 protein_coding protein_coding MGP_AJ_T0097385.1 MGP_AJ_G0036018.1 mouse_genomes_project X 111047176 111118697 + MGP_AJ_P0097385 Klhl4 protein_coding protein_coding MGP_AJ_T0096436.1 MGP_AJ_G0035783.1 mouse_genomes_project X 68958776 68962214 + MGP_AJ_P0096436 Pnma3 protein_coding protein_coding MGP_AJ_T0097980.1 MGP_AJ_G0036188.1 mouse_genomes_project X 154749977 154784076 - Mbtps2 protein_coding processed_transcript MGP_AJ_T0097981.1 MGP_AJ_G0036188.1 mouse_genomes_project X 154762842 154814701 - MGP_AJ_P0097981 Mbtps2 protein_coding protein_coding MGP_AJ_T0097982.1 MGP_AJ_G0036188.1 mouse_genomes_project X 154781016 154814636 - MGP_AJ_P0097982 Mbtps2 protein_coding protein_coding MGP_AJ_T0097983.1 MGP_AJ_G0036188.1 mouse_genomes_project X 154781017 154814636 - MGP_AJ_P0097983 Mbtps2 protein_coding protein_coding MGP_AJ_T0097985.1 MGP_AJ_G0036188.1 mouse_genomes_project X 154784136 154795512 - Mbtps2 protein_coding processed_transcript MGP_AJ_T0097986.1 MGP_AJ_G0036188.1 mouse_genomes_project X 154786271 154814637 - Mbtps2 protein_coding retained_intron MGP_AJ_T0097987.1 MGP_AJ_G0036188.1 mouse_genomes_project X 154787866 154814665 - MGP_AJ_P0097987 Mbtps2 protein_coding protein_coding MGP_AJ_T0097988.1 MGP_AJ_G0036188.1 mouse_genomes_project X 154807085 154814629 - Mbtps2 protein_coding retained_intron MGP_AJ_T0016336.1 MGP_AJ_G0014431.1 mouse_genomes_project X 46878830 46879363 - processed_pseudogene processed_pseudogene MGP_AJ_T0096223.1 MGP_AJ_G0035708.1 mouse_genomes_project X 48820730 48821895 - MGP_AJ_P0096223 Cxx1b protein_coding protein_coding MGP_AJ_T0009370.1 MGP_AJ_G0007523.1 mouse_genomes_project X 9763793 9803027 + Gm14505 lincRNA lincRNA MGP_AJ_T0016464.1 MGP_AJ_G0014559.1 mouse_genomes_project X 75132615 75132837 - processed_pseudogene processed_pseudogene MGP_AJ_T0100361.1 MGP_AJ_G0038327.1 mouse_genomes_project X 100591401 100591508 - Gm23378 snRNA snRNA MGP_AJ_T0011205.1 MGP_AJ_G0009327.1 mouse_genomes_project X 132483016 132483070 + Mir7646 miRNA miRNA MGP_AJ_T0098765.1 MGP_AJ_G0036749.1 mouse_genomes_project X 5364876 5364985 + Gm25885 rRNA rRNA MGP_AJ_T0005585.1 MGP_AJ_G0004707.1 mouse_genomes_project X 65096367 65101041 - Gm14705 antisense antisense MGP_AJ_T0005586.1 MGP_AJ_G0004707.1 mouse_genomes_project X 65097729 65100113 - Gm14705 antisense antisense MGP_AJ_T0100318.1 MGP_AJ_G0038284.1 mouse_genomes_project X 4123227 4123880 + Gm25728 snRNA snRNA MGP_AJ_T0101651.1 MGP_AJ_G0039617.1 mouse_genomes_project X 143876920 143877048 + Snora35 snoRNA snoRNA MGP_AJ_T0100319.1 MGP_AJ_G0038285.1 mouse_genomes_project X 6755458 6755565 + Gm26314 snRNA snRNA MGP_AJ_T0016900.1 MGP_AJ_G0014995.1 mouse_genomes_project X 163761564 163762962 - processed_pseudogene processed_pseudogene MGP_AJ_T0096112.1 MGP_AJ_G0035670.1 mouse_genomes_project X 43113985 43143478 + MGP_AJ_P0096112 Xpnpep2 protein_coding protein_coding MGP_AJ_T0096113.1 MGP_AJ_G0035670.1 mouse_genomes_project X 43114179 43140518 + MGP_AJ_P0096113 Xpnpep2 protein_coding protein_coding MGP_AJ_T0096114.1 MGP_AJ_G0035670.1 mouse_genomes_project X 43114181 43117418 + Xpnpep2 protein_coding processed_transcript MGP_AJ_T0096115.1 MGP_AJ_G0035670.1 mouse_genomes_project X 43114189 43143167 + MGP_AJ_P0096115 Xpnpep2 protein_coding protein_coding MGP_AJ_T0096116.1 MGP_AJ_G0035670.1 mouse_genomes_project X 43134248 43137654 + Xpnpep2 protein_coding processed_transcript MGP_AJ_T0096719.1 MGP_AJ_G0035827.1 mouse_genomes_project X 70372682 70381240 - MGP_AJ_P0096719 Fam3a protein_coding protein_coding MGP_AJ_T0096720.1 MGP_AJ_G0035827.1 mouse_genomes_project X 70372724 70381071 - MGP_AJ_P0096720 Fam3a protein_coding protein_coding MGP_AJ_T0096721.1 MGP_AJ_G0035827.1 mouse_genomes_project X 70372724 70380971 - MGP_AJ_P0096721 Fam3a protein_coding protein_coding MGP_AJ_T0096722.1 MGP_AJ_G0035827.1 mouse_genomes_project X 70373167 70381150 - MGP_AJ_P0096722 Fam3a protein_coding protein_coding MGP_AJ_T0096723.1 MGP_AJ_G0035827.1 mouse_genomes_project X 70373265 70381071 - MGP_AJ_P0096723 Fam3a protein_coding protein_coding MGP_AJ_T0096724.1 MGP_AJ_G0035827.1 mouse_genomes_project X 70374385 70381223 - MGP_AJ_P0096724 Fam3a protein_coding protein_coding MGP_AJ_T0096725.1 MGP_AJ_G0035827.1 mouse_genomes_project X 70374595 70381071 - MGP_AJ_P0096725 Fam3a protein_coding nonsense_mediated_decay MGP_AJ_T0096726.1 MGP_AJ_G0035827.1 mouse_genomes_project X 70374819 70375719 - Fam3a protein_coding retained_intron MGP_AJ_T0096727.1 MGP_AJ_G0035827.1 mouse_genomes_project X 70374875 70380655 - MGP_AJ_P0096727 Fam3a protein_coding protein_coding MGP_AJ_T0096728.1 MGP_AJ_G0035827.1 mouse_genomes_project X 70374875 70380718 - MGP_AJ_P0096728 Fam3a protein_coding nonsense_mediated_decay MGP_AJ_T0097644.1 MGP_AJ_G0036107.1 mouse_genomes_project X 136719946 136769968 - MGP_AJ_P0097644 Morc4 protein_coding protein_coding MGP_AJ_T0097645.1 MGP_AJ_G0036107.1 mouse_genomes_project X 136720218 136769991 - MGP_AJ_P0097645 Morc4 protein_coding protein_coding MGP_AJ_T0097646.1 MGP_AJ_G0036107.1 mouse_genomes_project X 136720989 136756227 - MGP_AJ_P0097646 Morc4 protein_coding protein_coding MGP_AJ_T0097647.1 MGP_AJ_G0036107.1 mouse_genomes_project X 136722545 136734423 - Morc4 protein_coding retained_intron MGP_AJ_T0097648.1 MGP_AJ_G0036107.1 mouse_genomes_project X 136734792 136753303 - MGP_AJ_P0097648 Morc4 protein_coding protein_coding MGP_AJ_T0097649.1 MGP_AJ_G0036107.1 mouse_genomes_project X 136754684 136769939 - Morc4 protein_coding retained_intron MGP_AJ_T0097650.1 MGP_AJ_G0036107.1 mouse_genomes_project X 136754691 136769936 - Morc4 protein_coding processed_transcript MGP_AJ_T0097651.1 MGP_AJ_G0036107.1 mouse_genomes_project X 136757098 136769724 - Morc4 protein_coding retained_intron MGP_AJ_T0097652.1 MGP_AJ_G0036107.1 mouse_genomes_project X 136757132 136769687 - MGP_AJ_P0097652 Morc4 protein_coding nonsense_mediated_decay MGP_AJ_T0097653.1 MGP_AJ_G0036107.1 mouse_genomes_project X 136757246 136769513 - MGP_AJ_P0097653 Morc4 protein_coding protein_coding MGP_AJ_T0016690.1 MGP_AJ_G0014785.1 mouse_genomes_project X 116832785 116833038 - processed_pseudogene processed_pseudogene MGP_AJ_T0016885.1 MGP_AJ_G0014980.1 mouse_genomes_project X 160079209 160079895 + processed_pseudogene processed_pseudogene MGP_AJ_T0096234.1 MGP_AJ_G0035717.1 mouse_genomes_project X 51929086 51929488 + MGP_AJ_P0096234 Gm2174 protein_coding protein_coding MGP_AJ_T0005594.1 MGP_AJ_G0004715.1 mouse_genomes_project X 90502599 90582435 + Gm14798 antisense antisense MGP_AJ_T0009390.1 MGP_AJ_G0007536.1 mouse_genomes_project X 56634196 56670293 + Gm14664 lincRNA lincRNA MGP_AJ_T0009432.1 MGP_AJ_G0007564.1 mouse_genomes_project X 137099031 137198686 - Gm15046 lincRNA lincRNA MGP_AJ_T0016548.1 MGP_AJ_G0014643.1 mouse_genomes_project X 91931710 91933824 - processed_pseudogene processed_pseudogene MGP_AJ_T0016863.1 MGP_AJ_G0014958.1 mouse_genomes_project X 155514122 155514699 + processed_pseudogene processed_pseudogene MGP_AJ_T0016845.1 MGP_AJ_G0014940.1 mouse_genomes_project X 152472652 152474203 - processed_pseudogene processed_pseudogene MGP_AJ_T0097753.1 MGP_AJ_G0036137.1 mouse_genomes_project X 141579584 142012021 + MGP_AJ_P0097753 Zcchc16 protein_coding protein_coding MGP_AJ_T0097754.1 MGP_AJ_G0036137.1 mouse_genomes_project X 142009110 142010868 + MGP_AJ_P0097754 Zcchc16 protein_coding protein_coding MGP_AJ_T0016423.1 MGP_AJ_G0014518.1 mouse_genomes_project X 69048659 69050891 - processed_pseudogene processed_pseudogene MGP_AJ_T0016819.1 MGP_AJ_G0014914.1 mouse_genomes_project X 147843709 147845249 - processed_pseudogene processed_pseudogene MGP_AJ_T0097699.1 MGP_AJ_G0036122.1 mouse_genomes_project X 138758336 138759512 - MGP_AJ_P0097699 protein_coding protein_coding MGP_AJ_T0101637.1 MGP_AJ_G0039603.1 mouse_genomes_project X 123356292 123356415 + Gm23586 snoRNA snoRNA MGP_AJ_T0005583.1 MGP_AJ_G0004705.1 mouse_genomes_project X 56129340 56379039 + antisense antisense MGP_AJ_T0016240.1 MGP_AJ_G0014335.1 mouse_genomes_project X 11327161 11327413 - processed_pseudogene processed_pseudogene MGP_AJ_T0096267.1 MGP_AJ_G0035726.1 mouse_genomes_project X 52553656 52559341 + MGP_AJ_P0096267 Brs3 protein_coding protein_coding MGP_AJ_T0016568.1 MGP_AJ_G0014663.1 mouse_genomes_project X 96819614 96820769 + processed_pseudogene processed_pseudogene MGP_AJ_T0016769.1 MGP_AJ_G0014864.1 mouse_genomes_project X 138507409 138507919 + processed_pseudogene processed_pseudogene MGP_AJ_T0096413.1 MGP_AJ_G0035773.1 mouse_genomes_project X 67918142 67936133 + MGP_AJ_P0096413 Cnga2 protein_coding protein_coding MGP_AJ_T0096414.1 MGP_AJ_G0035773.1 mouse_genomes_project X 67918148 67927494 + Cnga2 protein_coding processed_transcript MGP_AJ_T0016857.1 MGP_AJ_G0014952.1 mouse_genomes_project X 154828711 154829144 - processed_pseudogene processed_pseudogene MGP_AJ_T0016761.1 MGP_AJ_G0014856.1 mouse_genomes_project X 136792122 136793592 + processed_pseudogene processed_pseudogene MGP_AJ_T0100362.1 MGP_AJ_G0038328.1 mouse_genomes_project X 101597441 101597552 - Gm22090 snRNA snRNA MGP_AJ_T0016800.1 MGP_AJ_G0014895.1 mouse_genomes_project X 142490747 142491212 - processed_pseudogene processed_pseudogene MGP_AJ_T0101658.1 MGP_AJ_G0039624.1 mouse_genomes_project X 154635567 154635703 + Gm24281 snoRNA snoRNA MGP_AJ_T0018673.1 MGP_AJ_G0015769.1 mouse_genomes_project X 133546714 133563291 + BC065397 processed_transcript processed_transcript MGP_AJ_T0018674.1 MGP_AJ_G0015769.1 mouse_genomes_project X 133546736 133564990 + BC065397 processed_transcript processed_transcript MGP_AJ_T0018675.1 MGP_AJ_G0015769.1 mouse_genomes_project X 133546748 133549589 + BC065397 processed_transcript processed_transcript MGP_AJ_T0018676.1 MGP_AJ_G0015769.1 mouse_genomes_project X 133546778 133563269 + BC065397 processed_transcript processed_transcript MGP_AJ_T0018677.1 MGP_AJ_G0015769.1 mouse_genomes_project X 133547866 133611198 + BC065397 processed_transcript processed_transcript MGP_AJ_T0018678.1 MGP_AJ_G0015769.1 mouse_genomes_project X 133548312 133563306 + BC065397 processed_transcript processed_transcript MGP_AJ_T0018679.1 MGP_AJ_G0015769.1 mouse_genomes_project X 133570795 133611207 + BC065397 processed_transcript processed_transcript MGP_AJ_T0095630.1 MGP_AJ_G0035506.1 mouse_genomes_project X 2468118 2478439 + MGP_AJ_P0095630 Slc35a2 protein_coding protein_coding MGP_AJ_T0095631.1 MGP_AJ_G0035506.1 mouse_genomes_project X 2468321 2478411 + MGP_AJ_P0095631 Slc35a2 protein_coding protein_coding MGP_AJ_T0095632.1 MGP_AJ_G0035506.1 mouse_genomes_project X 2468400 2477974 + MGP_AJ_P0095632 Slc35a2 protein_coding protein_coding MGP_AJ_T0095633.1 MGP_AJ_G0035506.1 mouse_genomes_project X 2468455 2478409 + MGP_AJ_P0095633 Slc35a2 protein_coding protein_coding MGP_AJ_T0095634.1 MGP_AJ_G0035506.1 mouse_genomes_project X 2469913 2478407 + MGP_AJ_P0095634 Slc35a2 protein_coding protein_coding MGP_AJ_T0095635.1 MGP_AJ_G0035506.1 mouse_genomes_project X 2476967 2478411 + Slc35a2 protein_coding processed_transcript MGP_AJ_T0009427.1 MGP_AJ_G0007559.1 mouse_genomes_project X 111458254 111459863 + 4930555B12Rik lincRNA lincRNA MGP_AJ_T0016202.1 MGP_AJ_G0014297.1 mouse_genomes_project X 2642356 2643224 + processed_pseudogene processed_pseudogene MGP_AJ_T0098016.1 MGP_AJ_G0036196.1 mouse_genomes_project X 156708181 156734069 + MGP_AJ_P0098016 A830080D01Rik protein_coding protein_coding MGP_AJ_T0098017.1 MGP_AJ_G0036196.1 mouse_genomes_project X 156713230 156775720 + MGP_AJ_P0098017 A830080D01Rik protein_coding protein_coding MGP_AJ_T0098018.1 MGP_AJ_G0036196.1 mouse_genomes_project X 156713376 156775707 + MGP_AJ_P0098018 A830080D01Rik protein_coding protein_coding MGP_AJ_T0098019.1 MGP_AJ_G0036196.1 mouse_genomes_project X 156722225 156734119 + MGP_AJ_P0098019 A830080D01Rik protein_coding protein_coding MGP_AJ_T0098020.1 MGP_AJ_G0036196.1 mouse_genomes_project X 156749078 156774841 + A830080D01Rik protein_coding processed_transcript MGP_AJ_T0098021.1 MGP_AJ_G0036196.1 mouse_genomes_project X 156749767 156757327 + A830080D01Rik protein_coding retained_intron MGP_AJ_T0005588.1 MGP_AJ_G0004709.1 mouse_genomes_project X 67321912 67355980 + Gm16189 antisense antisense MGP_AJ_T0016725.1 MGP_AJ_G0014820.1 mouse_genomes_project X 129969524 129970381 - processed_pseudogene processed_pseudogene MGP_AJ_T0096878.1 MGP_AJ_G0035873.1 mouse_genomes_project X 81750336 81813300 + MGP_AJ_P0096878 Tab3 protein_coding protein_coding MGP_AJ_T0096879.1 MGP_AJ_G0035873.1 mouse_genomes_project X 81750348 81792040 + MGP_AJ_P0096879 Tab3 protein_coding protein_coding MGP_AJ_T0096880.1 MGP_AJ_G0035873.1 mouse_genomes_project X 81750353 81751940 + Tab3 protein_coding processed_transcript MGP_AJ_T0096881.1 MGP_AJ_G0035873.1 mouse_genomes_project X 81750464 81791830 + MGP_AJ_P0096881 Tab3 protein_coding protein_coding MGP_AJ_T0102942.1 MGP_AJ_G0040682.1 mouse_genomes_project X 53195667 53195811 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0016571.1 MGP_AJ_G0014666.1 mouse_genomes_project X 97742645 97742914 + processed_pseudogene processed_pseudogene MGP_AJ_T0097590.1 MGP_AJ_G0036090.1 mouse_genomes_project X 133806204 133867226 - MGP_AJ_P0097590 Slc25a53 protein_coding protein_coding MGP_AJ_T0097591.1 MGP_AJ_G0036090.1 mouse_genomes_project X 133806210 133867204 - MGP_AJ_P0097591 Slc25a53 protein_coding protein_coding MGP_AJ_T0097592.1 MGP_AJ_G0036090.1 mouse_genomes_project X 133806210 133819500 - MGP_AJ_P0097592 Slc25a53 protein_coding protein_coding MGP_AJ_T0097593.1 MGP_AJ_G0036090.1 mouse_genomes_project X 133808449 133819525 - MGP_AJ_P0097593 Slc25a53 protein_coding protein_coding MGP_AJ_T0097594.1 MGP_AJ_G0036090.1 mouse_genomes_project X 133808591 133819557 - MGP_AJ_P0097594 Slc25a53 protein_coding protein_coding MGP_AJ_T0097598.1 MGP_AJ_G0036090.1 mouse_genomes_project X 133827739 133858749 - Slc25a53 protein_coding retained_intron MGP_AJ_T0097599.1 MGP_AJ_G0036090.1 mouse_genomes_project X 133827776 133867228 - Slc25a53 protein_coding processed_transcript MGP_AJ_T0097600.1 MGP_AJ_G0036090.1 mouse_genomes_project X 133829503 133866923 - Slc25a53 protein_coding processed_transcript MGP_AJ_T0097601.1 MGP_AJ_G0036090.1 mouse_genomes_project X 133829504 133867198 - Slc25a53 protein_coding processed_transcript MGP_AJ_T0097602.1 MGP_AJ_G0036090.1 mouse_genomes_project X 133830272 133845162 - Slc25a53 protein_coding processed_transcript MGP_AJ_T0097603.1 MGP_AJ_G0036090.1 mouse_genomes_project X 133842578 133867225 - Slc25a53 protein_coding processed_transcript MGP_AJ_T0097604.1 MGP_AJ_G0036090.1 mouse_genomes_project X 133858671 133866915 - Slc25a53 protein_coding processed_transcript MGP_AJ_T0097605.1 MGP_AJ_G0036090.1 mouse_genomes_project X 133860493 133867228 - Slc25a53 protein_coding retained_intron MGP_AJ_T0097606.1 MGP_AJ_G0036090.1 mouse_genomes_project X 133861102 133866899 - Slc25a53 protein_coding processed_transcript MGP_AJ_T0016611.1 MGP_AJ_G0014706.1 mouse_genomes_project X 101709668 101710763 + processed_pseudogene processed_pseudogene MGP_AJ_T0100387.1 MGP_AJ_G0038353.1 mouse_genomes_project X 151836476 151836584 + Gm22359 snRNA snRNA MGP_AJ_T0095532.1 MGP_AJ_G0035490.1 mouse_genomes_project X 2152338 2167850 + MGP_AJ_P0095532 Foxp3 protein_coding protein_coding MGP_AJ_T0095533.1 MGP_AJ_G0035490.1 mouse_genomes_project X 2152355 2167841 + MGP_AJ_P0095533 Foxp3 protein_coding protein_coding MGP_AJ_T0095534.1 MGP_AJ_G0035490.1 mouse_genomes_project X 2153145 2167841 + MGP_AJ_P0095534 Foxp3 protein_coding protein_coding MGP_AJ_T0095535.1 MGP_AJ_G0035490.1 mouse_genomes_project X 2158884 2167850 + MGP_AJ_P0095535 Foxp3 protein_coding protein_coding MGP_AJ_T0101627.1 MGP_AJ_G0039593.1 mouse_genomes_project X 89712570 89712703 + Gm23454 snoRNA snoRNA MGP_AJ_T0016320.1 MGP_AJ_G0014415.1 mouse_genomes_project X 42585128 42587148 + processed_pseudogene processed_pseudogene MGP_AJ_T0096200.1 MGP_AJ_G0035697.1 mouse_genomes_project X 47008859 47012936 - MGP_AJ_P0096200 1700080O16Rik protein_coding protein_coding MGP_AJ_T0096201.1 MGP_AJ_G0035697.1 mouse_genomes_project X 47009056 47011212 - MGP_AJ_P0096201 1700080O16Rik protein_coding protein_coding MGP_AJ_T0097000.1 MGP_AJ_G0035912.1 mouse_genomes_project X 92980498 93108716 + MGP_AJ_P0097000 Heph protein_coding protein_coding MGP_AJ_T0097001.1 MGP_AJ_G0035912.1 mouse_genomes_project X 92981512 93060958 + MGP_AJ_P0097001 Heph protein_coding protein_coding MGP_AJ_T0097002.1 MGP_AJ_G0035912.1 mouse_genomes_project X 92981529 93108713 + MGP_AJ_P0097002 Heph protein_coding protein_coding MGP_AJ_T0097003.1 MGP_AJ_G0035912.1 mouse_genomes_project X 92981567 93001561 + Heph protein_coding retained_intron MGP_AJ_T0097004.1 MGP_AJ_G0035912.1 mouse_genomes_project X 92981567 93018578 + Heph protein_coding retained_intron MGP_AJ_T0009447.1 MGP_AJ_G0007573.1 mouse_genomes_project X 163905624 163909064 - Gm15226 lincRNA lincRNA MGP_AJ_T0016362.1 MGP_AJ_G0014457.1 mouse_genomes_project X 56115248 56116079 + processed_pseudogene processed_pseudogene MGP_AJ_T0096169.1 MGP_AJ_G0035685.1 mouse_genomes_project X 44682858 44683818 + MGP_AJ_P0096169 Olfr1320 protein_coding protein_coding MGP_AJ_T0095844.1 MGP_AJ_G0035572.1 mouse_genomes_project X 15666203 15678744 + MGP_AJ_P0095844 Cdk16 protein_coding protein_coding MGP_AJ_T0095845.1 MGP_AJ_G0035572.1 mouse_genomes_project X 15666248 15673180 + Cdk16 protein_coding processed_transcript MGP_AJ_T0095846.1 MGP_AJ_G0035572.1 mouse_genomes_project X 15666667 15678744 + MGP_AJ_P0095846 Cdk16 protein_coding protein_coding MGP_AJ_T0095847.1 MGP_AJ_G0035572.1 mouse_genomes_project X 15673100 15675103 + Cdk16 protein_coding retained_intron MGP_AJ_T0095848.1 MGP_AJ_G0035572.1 mouse_genomes_project X 15674678 15675303 + Cdk16 protein_coding retained_intron MGP_AJ_T0095849.1 MGP_AJ_G0035572.1 mouse_genomes_project X 15674835 15676026 + Cdk16 protein_coding retained_intron MGP_AJ_T0095850.1 MGP_AJ_G0035572.1 mouse_genomes_project X 15675222 15675985 + Cdk16 protein_coding retained_intron MGP_AJ_T0095851.1 MGP_AJ_G0035572.1 mouse_genomes_project X 15675262 15678663 + Cdk16 protein_coding processed_transcript MGP_AJ_T0096901.1 MGP_AJ_G0035883.1 mouse_genomes_project X 87205142 87206135 + MGP_AJ_P0096901 Gm44 protein_coding protein_coding MGP_AJ_T0016470.1 MGP_AJ_G0014565.1 mouse_genomes_project X 76801725 76801950 + processed_pseudogene processed_pseudogene MGP_AJ_T0016541.1 MGP_AJ_G0014636.1 mouse_genomes_project X 91281737 91283153 - processed_pseudogene processed_pseudogene MGP_AJ_T0016553.1 MGP_AJ_G0014648.1 mouse_genomes_project X 93410718 93413614 - processed_pseudogene processed_pseudogene MGP_AJ_T0096693.1 MGP_AJ_G0035822.1 mouse_genomes_project X 70297513 70304365 + MGP_AJ_P0096693 Fam50a protein_coding protein_coding MGP_AJ_T0096694.1 MGP_AJ_G0035822.1 mouse_genomes_project X 70297606 70304350 + Fam50a protein_coding retained_intron MGP_AJ_T0096695.1 MGP_AJ_G0035822.1 mouse_genomes_project X 70301720 70302218 + Fam50a protein_coding retained_intron MGP_AJ_T0097010.1 MGP_AJ_G0035915.1 mouse_genomes_project X 93865070 93916199 - MGP_AJ_P0097010 Eda2r protein_coding protein_coding MGP_AJ_T0097011.1 MGP_AJ_G0035915.1 mouse_genomes_project X 93868367 93916133 - MGP_AJ_P0097011 Eda2r protein_coding protein_coding MGP_AJ_T0097012.1 MGP_AJ_G0035915.1 mouse_genomes_project X 93869020 93916199 - Eda2r protein_coding retained_intron MGP_AJ_T0097013.1 MGP_AJ_G0035915.1 mouse_genomes_project X 93873754 93916155 - Eda2r protein_coding retained_intron MGP_AJ_T0011171.1 MGP_AJ_G0009293.1 mouse_genomes_project X 63729396 63729474 - Mir547 miRNA miRNA MGP_AJ_T0102939.1 MGP_AJ_G0040679.1 mouse_genomes_project X 41524553 41525324 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0097188.1 MGP_AJ_G0035955.1 mouse_genomes_project X 98675954 98691624 - MGP_AJ_P0097188 Ercc6l protein_coding protein_coding MGP_AJ_T0016601.1 MGP_AJ_G0014696.1 mouse_genomes_project X 100187069 100187635 + processed_pseudogene processed_pseudogene MGP_AJ_T0011769.1 MGP_AJ_G0009891.1 mouse_genomes_project X 100212619 100212824 + Gm27321 misc_RNA misc_RNA MGP_AJ_T0095677.1 MGP_AJ_G0035518.1 mouse_genomes_project X 2761104 2763338 - Rbm3 protein_coding processed_transcript MGP_AJ_T0095678.1 MGP_AJ_G0035518.1 mouse_genomes_project X 2761107 2767479 - MGP_AJ_P0095678 Rbm3 protein_coding protein_coding MGP_AJ_T0095679.1 MGP_AJ_G0035518.1 mouse_genomes_project X 2762913 2767461 - MGP_AJ_P0095679 Rbm3 protein_coding protein_coding MGP_AJ_T0095680.1 MGP_AJ_G0035518.1 mouse_genomes_project X 2764809 2767479 - MGP_AJ_P0095680 Rbm3 protein_coding nonsense_mediated_decay MGP_AJ_T0095681.1 MGP_AJ_G0035518.1 mouse_genomes_project X 2765032 2767504 - Rbm3 protein_coding retained_intron MGP_AJ_T0095682.1 MGP_AJ_G0035518.1 mouse_genomes_project X 2766255 2767541 - Rbm3 protein_coding retained_intron MGP_AJ_T0097413.1 MGP_AJ_G0036036.1 mouse_genomes_project X 126242927 126672896 + Diaph2 protein_coding retained_intron MGP_AJ_T0097414.1 MGP_AJ_G0036036.1 mouse_genomes_project X 126242927 126966318 + MGP_AJ_P0097414 Diaph2 protein_coding protein_coding MGP_AJ_T0097415.1 MGP_AJ_G0036036.1 mouse_genomes_project X 126242981 126830443 + Diaph2 protein_coding retained_intron MGP_AJ_T0097416.1 MGP_AJ_G0036036.1 mouse_genomes_project X 126242990 126961668 + MGP_AJ_P0097416 Diaph2 protein_coding protein_coding MGP_AJ_T0097417.1 MGP_AJ_G0036036.1 mouse_genomes_project X 126243009 126830116 + Diaph2 protein_coding retained_intron MGP_AJ_T0097418.1 MGP_AJ_G0036036.1 mouse_genomes_project X 126243096 126966321 + MGP_AJ_P0097418 Diaph2 protein_coding protein_coding MGP_AJ_T0097419.1 MGP_AJ_G0036036.1 mouse_genomes_project X 126462352 126528922 + Diaph2 protein_coding processed_transcript MGP_AJ_T0102967.1 MGP_AJ_G0040707.1 mouse_genomes_project X 132111655 132114578 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0016333.1 MGP_AJ_G0014428.1 mouse_genomes_project X 46256903 46257301 - processed_pseudogene processed_pseudogene MGP_AJ_T0102956.1 MGP_AJ_G0040696.1 mouse_genomes_project X 82606715 82612444 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0016251.1 MGP_AJ_G0014346.1 mouse_genomes_project X 14742316 14742713 + processed_pseudogene processed_pseudogene MGP_AJ_T0100392.1 MGP_AJ_G0038358.1 mouse_genomes_project X 160623904 160624024 - Gm26007 snRNA snRNA MGP_AJ_T0018613.1 MGP_AJ_G0015753.1 mouse_genomes_project X 35098180 35525335 + processed_transcript processed_transcript MGP_AJ_T0098074.1 MGP_AJ_G0036207.1 mouse_genomes_project X 158928156 158991172 + MGP_AJ_P0098074 Rai2 protein_coding protein_coding MGP_AJ_T0098075.1 MGP_AJ_G0036207.1 mouse_genomes_project X 158928714 158991174 + MGP_AJ_P0098075 Rai2 protein_coding protein_coding MGP_AJ_T0096335.1 MGP_AJ_G0035754.1 mouse_genomes_project X 64344967 64346593 + MGP_AJ_P0096335 protein_coding protein_coding MGP_AJ_T0016319.1 MGP_AJ_G0014414.1 mouse_genomes_project X 42469240 42470245 + processed_pseudogene processed_pseudogene MGP_AJ_T0016834.1 MGP_AJ_G0014929.1 mouse_genomes_project X 150677170 150677936 + processed_pseudogene processed_pseudogene MGP_AJ_T0016575.1 MGP_AJ_G0014670.1 mouse_genomes_project X 98290024 98290531 + processed_pseudogene processed_pseudogene MGP_AJ_T0097281.1 MGP_AJ_G0035985.1 mouse_genomes_project X 102971737 103059102 - Fndc3c1 protein_coding processed_transcript MGP_AJ_T0097282.1 MGP_AJ_G0035985.1 mouse_genomes_project X 102994623 103057595 - Fndc3c1 protein_coding retained_intron MGP_AJ_T0097283.1 MGP_AJ_G0035985.1 mouse_genomes_project X 103044771 103127634 - MGP_AJ_P0097283 Fndc3c1 protein_coding protein_coding MGP_AJ_T0097284.1 MGP_AJ_G0035985.1 mouse_genomes_project X 103058393 103073502 - Fndc3c1 protein_coding retained_intron MGP_AJ_T0097285.1 MGP_AJ_G0035985.1 mouse_genomes_project X 103087345 103127382 - MGP_AJ_P0097285 Fndc3c1 protein_coding protein_coding MGP_AJ_T0097286.1 MGP_AJ_G0035985.1 mouse_genomes_project X 103115018 103127257 - MGP_AJ_P0097286 Fndc3c1 protein_coding protein_coding MGP_AJ_T0097287.1 MGP_AJ_G0035985.1 mouse_genomes_project X 103115030 103127761 - MGP_AJ_P0097287 Fndc3c1 protein_coding protein_coding MGP_AJ_T0095660.1 MGP_AJ_G0035514.1 mouse_genomes_project X 2603344 2622277 - MGP_AJ_P0095660 Glod5 protein_coding protein_coding MGP_AJ_T0102087.1 MGP_AJ_G0039859.1 mouse_genomes_project X 132048075 132050902 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_AJ_T0016509.1 MGP_AJ_G0014604.1 mouse_genomes_project X 86122534 86126542 - processed_pseudogene processed_pseudogene MGP_AJ_T0011132.1 MGP_AJ_G0009254.1 mouse_genomes_project X 46256990 46257070 - Gm25241 miRNA miRNA MGP_AJ_T0097516.1 MGP_AJ_G0036063.1 mouse_genomes_project X 132300702 132310159 - MGP_AJ_P0097516 Nxf7 protein_coding protein_coding MGP_AJ_T0097517.1 MGP_AJ_G0036063.1 mouse_genomes_project X 132300702 132319845 - MGP_AJ_P0097517 Nxf7 protein_coding protein_coding MGP_AJ_T0097518.1 MGP_AJ_G0036063.1 mouse_genomes_project X 132300841 132314954 - MGP_AJ_P0097518 Nxf7 protein_coding protein_coding MGP_AJ_T0097519.1 MGP_AJ_G0036063.1 mouse_genomes_project X 132305452 132307206 - Nxf7 protein_coding retained_intron MGP_AJ_T0097520.1 MGP_AJ_G0036063.1 mouse_genomes_project X 132309515 132319826 - MGP_AJ_P0097520 Nxf7 protein_coding protein_coding MGP_AJ_T0097521.1 MGP_AJ_G0036063.1 mouse_genomes_project X 132309698 132317776 - MGP_AJ_P0097521 Nxf7 protein_coding protein_coding MGP_AJ_T0097231.1 MGP_AJ_G0035975.1 mouse_genomes_project X 101646987 101652418 + MGP_AJ_P0097231 Pbdc1 protein_coding protein_coding MGP_AJ_T0097232.1 MGP_AJ_G0035975.1 mouse_genomes_project X 101646992 101685042 + MGP_AJ_P0097232 Pbdc1 protein_coding protein_coding MGP_AJ_T0097233.1 MGP_AJ_G0035975.1 mouse_genomes_project X 101647006 101650392 + Pbdc1 protein_coding retained_intron MGP_AJ_T0095728.1 MGP_AJ_G0035535.1 mouse_genomes_project X 4701284 4701865 + MGP_AJ_P0095728 Hypm protein_coding protein_coding MGP_AJ_T0016303.1 MGP_AJ_G0014398.1 mouse_genomes_project X 38442766 38443424 - processed_pseudogene processed_pseudogene MGP_AJ_T0016280.1 MGP_AJ_G0014375.1 mouse_genomes_project X 33781618 33781912 + processed_pseudogene processed_pseudogene MGP_AJ_T0016665.1 MGP_AJ_G0014760.1 mouse_genomes_project X 111524565 111525024 + processed_pseudogene processed_pseudogene MGP_AJ_T0016667.1 MGP_AJ_G0014762.1 mouse_genomes_project X 111978877 111979507 - processed_pseudogene processed_pseudogene MGP_AJ_T0016399.1 MGP_AJ_G0014494.1 mouse_genomes_project X 63443513 63444076 + processed_pseudogene processed_pseudogene MGP_AJ_T0097595.1 MGP_AJ_G0036091.1 mouse_genomes_project X 133819622 133822930 + MGP_AJ_P0097595 Zcchc18 protein_coding protein_coding MGP_AJ_T0097596.1 MGP_AJ_G0036091.1 mouse_genomes_project X 133819626 133822668 + MGP_AJ_P0097596 Zcchc18 protein_coding protein_coding MGP_AJ_T0097597.1 MGP_AJ_G0036091.1 mouse_genomes_project X 133819765 133825106 + MGP_AJ_P0097597 Zcchc18 protein_coding protein_coding MGP_AJ_T0011172.1 MGP_AJ_G0009294.1 mouse_genomes_project X 63755567 63755642 - Mir509 miRNA miRNA MGP_AJ_T0096027.1 MGP_AJ_G0035651.1 mouse_genomes_project X 33555220 33586316 - MGP_AJ_P0096027 Cul4b protein_coding protein_coding MGP_AJ_T0096028.1 MGP_AJ_G0035651.1 mouse_genomes_project X 33555220 33598127 - MGP_AJ_P0096028 Cul4b protein_coding protein_coding MGP_AJ_T0096029.1 MGP_AJ_G0035651.1 mouse_genomes_project X 33555516 33586453 - MGP_AJ_P0096029 Cul4b protein_coding nonsense_mediated_decay MGP_AJ_T0096030.1 MGP_AJ_G0035651.1 mouse_genomes_project X 33555520 33598114 - MGP_AJ_P0096030 Cul4b protein_coding protein_coding MGP_AJ_T0097334.1 MGP_AJ_G0036002.1 mouse_genomes_project X 105903042 105904865 + MGP_AJ_P0097334 Gm6377 protein_coding protein_coding MGP_AJ_T0097335.1 MGP_AJ_G0036002.1 mouse_genomes_project X 105903044 105906726 + MGP_AJ_P0097335 Gm6377 protein_coding protein_coding MGP_AJ_T0095829.1 MGP_AJ_G0035567.1 mouse_genomes_project X 15405906 15500173 + MGP_AJ_P0095829 Jade3 protein_coding protein_coding MGP_AJ_T0095830.1 MGP_AJ_G0035567.1 mouse_genomes_project X 15406006 15475167 + Jade3 protein_coding retained_intron MGP_AJ_T0095831.1 MGP_AJ_G0035567.1 mouse_genomes_project X 15406027 15500179 + MGP_AJ_P0095831 Jade3 protein_coding unknown_likely_coding MGP_AJ_T0095832.1 MGP_AJ_G0035567.1 mouse_genomes_project X 15437465 15498130 + MGP_AJ_P0095832 Jade3 protein_coding protein_coding MGP_AJ_T0016257.1 MGP_AJ_G0014352.1 mouse_genomes_project X 15371752 15372254 + processed_pseudogene processed_pseudogene MGP_AJ_T0095892.1 MGP_AJ_G0035583.1 mouse_genomes_project X 16116482 16121855 + MGP_AJ_P0095892 Ssxa1 protein_coding protein_coding MGP_AJ_T0095893.1 MGP_AJ_G0035583.1 mouse_genomes_project X 16119034 16121855 + MGP_AJ_P0095893 Ssxa1 protein_coding protein_coding MGP_AJ_T0016678.1 MGP_AJ_G0014773.1 mouse_genomes_project X 114264394 114269482 + processed_pseudogene processed_pseudogene MGP_AJ_T0097510.1 MGP_AJ_G0036059.1 mouse_genomes_project X 131625824 131664389 - MGP_AJ_P0097510 Zmat1 protein_coding protein_coding MGP_AJ_T0097511.1 MGP_AJ_G0036059.1 mouse_genomes_project X 131625827 131664413 - MGP_AJ_P0097511 Zmat1 protein_coding protein_coding MGP_AJ_T0097512.1 MGP_AJ_G0036059.1 mouse_genomes_project X 131627229 131633563 - Zmat1 protein_coding retained_intron MGP_AJ_T0016790.1 MGP_AJ_G0014885.1 mouse_genomes_project X 141098898 141099208 - processed_pseudogene processed_pseudogene MGP_AJ_T0016268.1 MGP_AJ_G0014363.1 mouse_genomes_project X 17401744 17402287 - processed_pseudogene processed_pseudogene MGP_AJ_T0096477.1 MGP_AJ_G0035798.1 mouse_genomes_project X 69687838 69710062 + MGP_AJ_P0096477 Abcd1 protein_coding protein_coding MGP_AJ_T0096478.1 MGP_AJ_G0035798.1 mouse_genomes_project X 69687981 69702960 + MGP_AJ_P0096478 Abcd1 protein_coding protein_coding MGP_AJ_T0016301.1 MGP_AJ_G0014396.1 mouse_genomes_project X 37382323 37382491 + processed_pseudogene processed_pseudogene MGP_AJ_T0096329.1 MGP_AJ_G0035749.1 mouse_genomes_project X 60765665 60767036 + MGP_AJ_P0096329 Ctag2 protein_coding protein_coding MGP_AJ_T0011783.1 MGP_AJ_G0009905.1 mouse_genomes_project X 159917782 159918083 + Gm22257 misc_RNA misc_RNA MGP_AJ_T0098184.1 MGP_AJ_G0036236.1 mouse_genomes_project X 163781442 163794687 - MGP_AJ_P0098184 Tceanc protein_coding protein_coding MGP_AJ_T0098185.1 MGP_AJ_G0036236.1 mouse_genomes_project X 163783978 163785058 - MGP_AJ_P0098185 Tceanc protein_coding protein_coding MGP_AJ_T0098186.1 MGP_AJ_G0036236.1 mouse_genomes_project X 163784952 163802574 - MGP_AJ_P0098186 Tceanc protein_coding protein_coding MGP_AJ_T0016458.1 MGP_AJ_G0014553.1 mouse_genomes_project X 74559488 74560572 + processed_pseudogene processed_pseudogene MGP_AJ_T0097808.1 MGP_AJ_G0036147.1 mouse_genomes_project X 147575444 147587087 - MGP_AJ_P0097808 Tro protein_coding protein_coding MGP_AJ_T0097809.1 MGP_AJ_G0036147.1 mouse_genomes_project X 147575444 147586940 - MGP_AJ_P0097809 Tro protein_coding protein_coding MGP_AJ_T0097810.1 MGP_AJ_G0036147.1 mouse_genomes_project X 147575448 147586940 - MGP_AJ_P0097810 Tro protein_coding protein_coding MGP_AJ_T0097811.1 MGP_AJ_G0036147.1 mouse_genomes_project X 147575448 147586903 - MGP_AJ_P0097811 Tro protein_coding protein_coding MGP_AJ_T0097812.1 MGP_AJ_G0036147.1 mouse_genomes_project X 147575448 147586903 - MGP_AJ_P0097812 Tro protein_coding protein_coding MGP_AJ_T0097813.1 MGP_AJ_G0036147.1 mouse_genomes_project X 147575566 147585748 - MGP_AJ_P0097813 Tro protein_coding protein_coding MGP_AJ_T0097814.1 MGP_AJ_G0036147.1 mouse_genomes_project X 147579152 147581512 - Tro protein_coding retained_intron MGP_AJ_T0097815.1 MGP_AJ_G0036147.1 mouse_genomes_project X 147579305 147586903 - MGP_AJ_P0097815 Tro protein_coding nonsense_mediated_decay MGP_AJ_T0097816.1 MGP_AJ_G0036147.1 mouse_genomes_project X 147579429 147581561 - Tro protein_coding retained_intron MGP_AJ_T0097817.1 MGP_AJ_G0036147.1 mouse_genomes_project X 147581145 147582688 - Tro protein_coding retained_intron MGP_AJ_T0097818.1 MGP_AJ_G0036147.1 mouse_genomes_project X 147583226 147586876 - MGP_AJ_P0097818 Tro protein_coding protein_coding MGP_AJ_T0095979.1 MGP_AJ_G0035626.1 mouse_genomes_project X 32547787 32579484 + protein_coding retained_intron MGP_AJ_T0016856.1 MGP_AJ_G0014951.1 mouse_genomes_project X 154820368 154820500 + processed_pseudogene processed_pseudogene MGP_AJ_T0098182.1 MGP_AJ_G0036235.1 mouse_genomes_project X 163735513 163757987 - MGP_AJ_P0098182 Rab9 protein_coding protein_coding MGP_AJ_T0098183.1 MGP_AJ_G0036235.1 mouse_genomes_project X 163736412 163753519 - MGP_AJ_P0098183 Rab9 protein_coding protein_coding MGP_AJ_T0016838.1 MGP_AJ_G0014933.1 mouse_genomes_project X 151900502 151901488 + processed_pseudogene processed_pseudogene MGP_AJ_T0016226.1 MGP_AJ_G0014321.1 mouse_genomes_project X 7597642 7597750 + processed_pseudogene processed_pseudogene MGP_AJ_T0016332.1 MGP_AJ_G0014427.1 mouse_genomes_project X 46256757 46257857 - processed_pseudogene processed_pseudogene MGP_AJ_T0100317.1 MGP_AJ_G0038283.1 mouse_genomes_project X 4123227 4123880 + Gm25481 snRNA snRNA MGP_AJ_T0096063.1 MGP_AJ_G0035657.1 mouse_genomes_project X 37083873 37096953 + Xiap protein_coding processed_transcript MGP_AJ_T0096064.1 MGP_AJ_G0035657.1 mouse_genomes_project X 37092030 37134989 + MGP_AJ_P0096064 Xiap protein_coding protein_coding MGP_AJ_T0096065.1 MGP_AJ_G0035657.1 mouse_genomes_project X 37092539 37134989 + MGP_AJ_P0096065 Xiap protein_coding protein_coding MGP_AJ_T0096066.1 MGP_AJ_G0035657.1 mouse_genomes_project X 37092551 37096953 + Xiap protein_coding processed_transcript MGP_AJ_T0096067.1 MGP_AJ_G0035657.1 mouse_genomes_project X 37092896 37134989 + Xiap protein_coding processed_transcript MGP_AJ_T0096068.1 MGP_AJ_G0035657.1 mouse_genomes_project X 37095640 37134989 + MGP_AJ_P0096068 Xiap protein_coding protein_coding MGP_AJ_T0096069.1 MGP_AJ_G0035657.1 mouse_genomes_project X 37119349 37134989 + MGP_AJ_P0096069 Xiap protein_coding protein_coding MGP_AJ_T0100321.1 MGP_AJ_G0038287.1 mouse_genomes_project X 9279772 9279963 - Gm25202 snRNA snRNA MGP_AJ_T0011137.1 MGP_AJ_G0009259.1 mouse_genomes_project X 47818464 47818548 - Mir19b-2 miRNA miRNA MGP_AJ_T0016744.1 MGP_AJ_G0014839.1 mouse_genomes_project X 133742579 133743701 + processed_pseudogene processed_pseudogene MGP_AJ_T0016881.1 MGP_AJ_G0014976.1 mouse_genomes_project X 159805321 159805775 - processed_pseudogene processed_pseudogene MGP_AJ_T0096824.1 MGP_AJ_G0035854.1 mouse_genomes_project X 72527904 72532527 + MGP_AJ_P0096824 Cldn34b4 protein_coding protein_coding MGP_AJ_T0096825.1 MGP_AJ_G0035854.1 mouse_genomes_project X 72528006 72532436 + MGP_AJ_P0096825 Cldn34b4 protein_coding protein_coding MGP_AJ_T0097495.1 MGP_AJ_G0036056.1 mouse_genomes_project X 131366871 131369627 - MGP_AJ_P0097495 Armcx6 protein_coding protein_coding MGP_AJ_T0097496.1 MGP_AJ_G0036056.1 mouse_genomes_project X 131366871 131369541 - MGP_AJ_P0097496 Armcx6 protein_coding protein_coding MGP_AJ_T0097497.1 MGP_AJ_G0036056.1 mouse_genomes_project X 131368179 131369557 - Armcx6 protein_coding processed_transcript MGP_AJ_T0097498.1 MGP_AJ_G0036056.1 mouse_genomes_project X 131368359 131369571 - Armcx6 protein_coding processed_transcript MGP_AJ_T0016883.1 MGP_AJ_G0014978.1 mouse_genomes_project X 159926136 159926778 + processed_pseudogene processed_pseudogene MGP_AJ_T0018633.1 MGP_AJ_G0015758.1 mouse_genomes_project X 56717362 56780495 + C230004F18Rik processed_transcript processed_transcript MGP_AJ_T0018634.1 MGP_AJ_G0015758.1 mouse_genomes_project X 56717362 56735768 + C230004F18Rik processed_transcript processed_transcript MGP_AJ_T0018635.1 MGP_AJ_G0015758.1 mouse_genomes_project X 56717362 56721625 + C230004F18Rik processed_transcript processed_transcript MGP_AJ_T0018636.1 MGP_AJ_G0015758.1 mouse_genomes_project X 56717362 56740406 + C230004F18Rik processed_transcript processed_transcript MGP_AJ_T0018637.1 MGP_AJ_G0015758.1 mouse_genomes_project X 56717374 56780495 + C230004F18Rik processed_transcript processed_transcript MGP_AJ_T0018659.1 MGP_AJ_G0015764.1 mouse_genomes_project X 105541359 105591959 + processed_transcript processed_transcript MGP_AJ_T0018660.1 MGP_AJ_G0015764.1 mouse_genomes_project X 105541882 105591753 + processed_transcript processed_transcript MGP_AJ_T0018661.1 MGP_AJ_G0015764.1 mouse_genomes_project X 105541958 105680220 + processed_transcript processed_transcript MGP_AJ_T0018662.1 MGP_AJ_G0015764.1 mouse_genomes_project X 105542037 105591746 + processed_transcript processed_transcript MGP_AJ_T0018663.1 MGP_AJ_G0015764.1 mouse_genomes_project X 105542044 105546866 + processed_transcript retained_intron MGP_AJ_T0018664.1 MGP_AJ_G0015764.1 mouse_genomes_project X 105542059 105582377 + processed_transcript processed_transcript MGP_AJ_T0018665.1 MGP_AJ_G0015764.1 mouse_genomes_project X 105542075 105582581 + processed_transcript processed_transcript MGP_AJ_T0018666.1 MGP_AJ_G0015764.1 mouse_genomes_project X 105611940 105680535 + processed_transcript processed_transcript MGP_AJ_T0101661.1 MGP_AJ_G0039627.1 mouse_genomes_project X 159981826 159981945 + Gm23786 snoRNA snoRNA MGP_AJ_T0016747.1 MGP_AJ_G0014842.1 mouse_genomes_project X 133946172 133947006 - processed_pseudogene processed_pseudogene MGP_AJ_T0101911.1 MGP_AJ_G0039774.1 mouse_genomes_project X 133824675 133824971 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0095714.1 MGP_AJ_G0035528.1 mouse_genomes_project X 3641326 3643909 + MGP_AJ_P0095714 B630019K06Rik protein_coding protein_coding MGP_AJ_T0016378.1 MGP_AJ_G0014473.1 mouse_genomes_project X 57742585 57743815 - processed_pseudogene processed_pseudogene MGP_AJ_T0016694.1 MGP_AJ_G0014789.1 mouse_genomes_project X 117884988 117885635 + processed_pseudogene processed_pseudogene MGP_AJ_T0096479.1 MGP_AJ_G0035799.1 mouse_genomes_project X 69728438 69744704 + Plxnb3 protein_coding retained_intron MGP_AJ_T0096480.1 MGP_AJ_G0035799.1 mouse_genomes_project X 69728438 69744704 + Plxnb3 protein_coding retained_intron MGP_AJ_T0096481.1 MGP_AJ_G0035799.1 mouse_genomes_project X 69728438 69744704 + Plxnb3 protein_coding retained_intron MGP_AJ_T0096482.1 MGP_AJ_G0035799.1 mouse_genomes_project X 69728441 69744210 + MGP_AJ_P0096482 Plxnb3 protein_coding unknown_likely_coding MGP_AJ_T0096483.1 MGP_AJ_G0035799.1 mouse_genomes_project X 69728447 69744704 + MGP_AJ_P0096483 Plxnb3 protein_coding protein_coding MGP_AJ_T0096484.1 MGP_AJ_G0035799.1 mouse_genomes_project X 69737490 69741624 + Plxnb3 protein_coding retained_intron MGP_AJ_T0011202.1 MGP_AJ_G0009324.1 mouse_genomes_project X 127392916 127393026 - Gm26209 miRNA miRNA MGP_AJ_T0016269.1 MGP_AJ_G0014364.1 mouse_genomes_project X 17408924 17409408 + processed_pseudogene processed_pseudogene MGP_AJ_T0016683.1 MGP_AJ_G0014778.1 mouse_genomes_project X 114696618 114696969 - processed_pseudogene processed_pseudogene MGP_AJ_T0016452.1 MGP_AJ_G0014547.1 mouse_genomes_project X 73824998 73826654 - processed_pseudogene processed_pseudogene MGP_AJ_T0101630.1 MGP_AJ_G0039596.1 mouse_genomes_project X 100660239 100660377 - Gm22266 snoRNA snoRNA MGP_AJ_T0101641.1 MGP_AJ_G0039607.1 mouse_genomes_project X 129111460 129111591 - Gm23768 snoRNA snoRNA MGP_AJ_T0098045.1 MGP_AJ_G0036201.1 mouse_genomes_project X 157697685 157722465 + MGP_AJ_P0098045 Phka2 protein_coding protein_coding MGP_AJ_T0098046.1 MGP_AJ_G0036201.1 mouse_genomes_project X 157697697 157782982 + MGP_AJ_P0098046 Phka2 protein_coding protein_coding MGP_AJ_T0098047.1 MGP_AJ_G0036201.1 mouse_genomes_project X 157697947 157724501 + Phka2 protein_coding retained_intron MGP_AJ_T0098048.1 MGP_AJ_G0036201.1 mouse_genomes_project X 157697947 157782981 + MGP_AJ_P0098048 Phka2 protein_coding protein_coding MGP_AJ_T0098049.1 MGP_AJ_G0036201.1 mouse_genomes_project X 157697978 157747394 + MGP_AJ_P0098049 Phka2 protein_coding protein_coding MGP_AJ_T0098050.1 MGP_AJ_G0036201.1 mouse_genomes_project X 157718036 157729909 + Phka2 protein_coding processed_transcript MGP_AJ_T0098051.1 MGP_AJ_G0036201.1 mouse_genomes_project X 157718046 157729904 + Phka2 protein_coding processed_transcript MGP_AJ_T0098052.1 MGP_AJ_G0036201.1 mouse_genomes_project X 157725582 157777670 + Phka2 protein_coding processed_transcript MGP_AJ_T0098053.1 MGP_AJ_G0036201.1 mouse_genomes_project X 157746225 157751188 + Phka2 protein_coding processed_transcript MGP_AJ_T0095973.1 MGP_AJ_G0035620.1 mouse_genomes_project X 32462736 32520536 + MGP_AJ_P0095973 Rhox2f protein_coding protein_coding MGP_AJ_T0016229.1 MGP_AJ_G0014324.1 mouse_genomes_project X 7879922 7880279 - processed_pseudogene processed_pseudogene MGP_AJ_T0016734.1 MGP_AJ_G0014829.1 mouse_genomes_project X 131927974 131928720 + processed_pseudogene processed_pseudogene MGP_AJ_T0098784.1 MGP_AJ_G0036768.1 mouse_genomes_project X 165225311 165225421 + Gm24772 rRNA rRNA MGP_AJ_T0100380.1 MGP_AJ_G0038346.1 mouse_genomes_project X 142049616 142049759 + Gm25097 snRNA snRNA MGP_AJ_T0096118.1 MGP_AJ_G0035672.1 mouse_genomes_project X 43180977 43219348 - MGP_AJ_P0096118 Zdhhc9 protein_coding protein_coding MGP_AJ_T0096119.1 MGP_AJ_G0035672.1 mouse_genomes_project X 43180977 43219157 - MGP_AJ_P0096119 Zdhhc9 protein_coding protein_coding MGP_AJ_T0096120.1 MGP_AJ_G0035672.1 mouse_genomes_project X 43191177 43219135 - Zdhhc9 protein_coding retained_intron MGP_AJ_T0096121.1 MGP_AJ_G0035672.1 mouse_genomes_project X 43200515 43219072 - Zdhhc9 protein_coding retained_intron MGP_AJ_T0096122.1 MGP_AJ_G0035672.1 mouse_genomes_project X 43212191 43218798 - Zdhhc9 protein_coding processed_transcript MGP_AJ_T0096123.1 MGP_AJ_G0035672.1 mouse_genomes_project X 43217137 43219128 - Zdhhc9 protein_coding processed_transcript MGP_AJ_T0097670.1 MGP_AJ_G0036112.1 mouse_genomes_project X 137383206 137394639 + Prps1 protein_coding processed_transcript MGP_AJ_T0097671.1 MGP_AJ_G0036112.1 mouse_genomes_project X 137383206 137405329 + MGP_AJ_P0097671 Prps1 protein_coding protein_coding MGP_AJ_T0016649.1 MGP_AJ_G0014744.1 mouse_genomes_project X 109248723 109249631 - processed_pseudogene processed_pseudogene MGP_AJ_T0016587.1 MGP_AJ_G0014682.1 mouse_genomes_project X 99647876 99648124 + processed_pseudogene processed_pseudogene MGP_AJ_T0096815.1 MGP_AJ_G0035850.1 mouse_genomes_project X 71869785 71956911 - MGP_AJ_P0096815 Pls3 protein_coding protein_coding MGP_AJ_T0096816.1 MGP_AJ_G0035850.1 mouse_genomes_project X 71869794 71956299 - MGP_AJ_P0096816 Pls3 protein_coding protein_coding MGP_AJ_T0096817.1 MGP_AJ_G0035850.1 mouse_genomes_project X 71869794 71908932 - MGP_AJ_P0096817 Pls3 protein_coding protein_coding MGP_AJ_T0096818.1 MGP_AJ_G0035850.1 mouse_genomes_project X 71869799 71925082 - MGP_AJ_P0096818 Pls3 protein_coding protein_coding MGP_AJ_T0096819.1 MGP_AJ_G0035850.1 mouse_genomes_project X 71870902 71925204 - MGP_AJ_P0096819 Pls3 protein_coding protein_coding MGP_AJ_T0096820.1 MGP_AJ_G0035850.1 mouse_genomes_project X 71955137 71956828 - Pls3 protein_coding processed_transcript MGP_AJ_T0098769.1 MGP_AJ_G0036753.1 mouse_genomes_project X 44871645 44871733 + n-R5s6 rRNA rRNA MGP_AJ_T0100323.1 MGP_AJ_G0038289.1 mouse_genomes_project X 12312952 12313056 + Gm22294 snRNA snRNA MGP_AJ_T0102952.1 MGP_AJ_G0040692.1 mouse_genomes_project X 82496342 82497572 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0016573.1 MGP_AJ_G0014668.1 mouse_genomes_project X 98031332 98032593 + processed_pseudogene processed_pseudogene MGP_AJ_T0095719.1 MGP_AJ_G0035533.1 mouse_genomes_project X 4263290 4297270 - MGP_AJ_P0095719 Cybb protein_coding protein_coding MGP_AJ_T0095720.1 MGP_AJ_G0035533.1 mouse_genomes_project X 4274909 4297215 - MGP_AJ_P0095720 Cybb protein_coding nonsense_mediated_decay MGP_AJ_T0095721.1 MGP_AJ_G0035533.1 mouse_genomes_project X 4277365 4279518 - Cybb protein_coding retained_intron MGP_AJ_T0095722.1 MGP_AJ_G0035533.1 mouse_genomes_project X 4285002 4316617 - MGP_AJ_P0095722 Cybb protein_coding protein_coding MGP_AJ_T0095723.1 MGP_AJ_G0035533.1 mouse_genomes_project X 4292933 4297216 - Cybb protein_coding retained_intron MGP_AJ_T0102089.1 MGP_AJ_G0039861.1 mouse_genomes_project X 147750308 147779802 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_AJ_T0102090.1 MGP_AJ_G0039861.1 mouse_genomes_project X 147772827 147775051 + transcribed_unprocessed_pseudogene processed_transcript MGP_AJ_T0102091.1 MGP_AJ_G0039861.1 mouse_genomes_project X 147776440 147779915 + transcribed_unprocessed_pseudogene processed_transcript MGP_AJ_T0009428.1 MGP_AJ_G0007560.1 mouse_genomes_project X 114074917 114075286 + Gm28579 lincRNA lincRNA MGP_AJ_T0016282.1 MGP_AJ_G0014377.1 mouse_genomes_project X 34134608 34135555 - processed_pseudogene processed_pseudogene MGP_AJ_T0097761.1 MGP_AJ_G0036140.1 mouse_genomes_project X 143844886 143959011 + Htr2c protein_coding retained_intron MGP_AJ_T0097762.1 MGP_AJ_G0036140.1 mouse_genomes_project X 143844886 143871823 + Htr2c protein_coding retained_intron MGP_AJ_T0097763.1 MGP_AJ_G0036140.1 mouse_genomes_project X 143845003 143953479 + Htr2c protein_coding processed_transcript MGP_AJ_T0097764.1 MGP_AJ_G0036140.1 mouse_genomes_project X 143845097 144076317 + MGP_AJ_P0097764 Htr2c protein_coding protein_coding MGP_AJ_T0097765.1 MGP_AJ_G0036140.1 mouse_genomes_project X 143845396 144063114 + MGP_AJ_P0097765 Htr2c protein_coding protein_coding MGP_AJ_T0016203.1 MGP_AJ_G0014298.1 mouse_genomes_project X 2659381 2659767 - processed_pseudogene processed_pseudogene MGP_AJ_T0011116.1 MGP_AJ_G0009238.1 mouse_genomes_project X 2387521 2387642 + Mir1198 miRNA miRNA MGP_AJ_T0097214.1 MGP_AJ_G0035965.1 mouse_genomes_project X 99997127 100006813 + MGP_AJ_P0097214 Tsx protein_coding protein_coding MGP_AJ_T0005576.1 MGP_AJ_G0004699.1 mouse_genomes_project X 41254438 41312007 - 4930515L19Rik antisense antisense MGP_AJ_T0096334.1 MGP_AJ_G0035753.1 mouse_genomes_project X 63651229 63652816 - MGP_AJ_P0096334 4933436I01Rik protein_coding protein_coding MGP_AJ_T0016383.1 MGP_AJ_G0014478.1 mouse_genomes_project X 58291788 58292270 + processed_pseudogene processed_pseudogene MGP_AJ_T0098858.1 MGP_AJ_G0036842.1 mouse_genomes_project X 111943548 111943929 + Gm27414 scaRNA scaRNA MGP_AJ_T0097706.1 MGP_AJ_G0036126.1 mouse_genomes_project X 139204485 139206028 - MGP_AJ_P0097706 Kcne1l protein_coding protein_coding MGP_AJ_T0098110.1 MGP_AJ_G0036215.1 mouse_genomes_project X 160746165 160783294 - MGP_AJ_P0098110 Grpr protein_coding protein_coding MGP_AJ_T0016855.1 MGP_AJ_G0014950.1 mouse_genomes_project X 154820050 154820185 - processed_pseudogene processed_pseudogene MGP_AJ_T0016321.1 MGP_AJ_G0014416.1 mouse_genomes_project X 43317816 43318164 - processed_pseudogene processed_pseudogene MGP_AJ_T0101659.1 MGP_AJ_G0039625.1 mouse_genomes_project X 155585578 155585729 + Gm22522 snoRNA snoRNA MGP_AJ_T0011782.1 MGP_AJ_G0009904.1 mouse_genomes_project X 159538881 159539155 - Gm23867 misc_RNA misc_RNA MGP_AJ_T0009446.1 MGP_AJ_G0007572.1 mouse_genomes_project X 159034097 159044880 - Gm15205 lincRNA lincRNA MGP_AJ_T0016235.1 MGP_AJ_G0014330.1 mouse_genomes_project X 9253739 9254605 + processed_pseudogene processed_pseudogene MGP_AJ_T0096959.1 MGP_AJ_G0035901.1 mouse_genomes_project X 91569524 91576333 - MGP_AJ_P0096959 Spin4 protein_coding protein_coding MGP_AJ_T0016395.1 MGP_AJ_G0014490.1 mouse_genomes_project X 62723895 62725332 - processed_pseudogene processed_pseudogene MGP_AJ_T0016763.1 MGP_AJ_G0014858.1 mouse_genomes_project X 137555779 137556233 - processed_pseudogene processed_pseudogene MGP_AJ_T0097484.1 MGP_AJ_G0036054.1 mouse_genomes_project X 131301278 131311517 + MGP_AJ_P0097484 Armcx4 protein_coding protein_coding MGP_AJ_T0096134.1 MGP_AJ_G0035676.1 mouse_genomes_project X 43496002 43535128 - Aifm1 protein_coding retained_intron MGP_AJ_T0096135.1 MGP_AJ_G0035676.1 mouse_genomes_project X 43496002 43535261 - MGP_AJ_P0096135 Aifm1 protein_coding protein_coding MGP_AJ_T0096136.1 MGP_AJ_G0035676.1 mouse_genomes_project X 43496002 43535265 - MGP_AJ_P0096136 Aifm1 protein_coding protein_coding MGP_AJ_T0096137.1 MGP_AJ_G0035676.1 mouse_genomes_project X 43496003 43503959 - Aifm1 protein_coding processed_transcript MGP_AJ_T0096138.1 MGP_AJ_G0035676.1 mouse_genomes_project X 43506520 43507581 - Aifm1 protein_coding processed_transcript MGP_AJ_T0095527.1 MGP_AJ_G0035489.1 mouse_genomes_project X 2128855 2146936 - MGP_AJ_P0095527 Ppp1r3f protein_coding protein_coding MGP_AJ_T0095528.1 MGP_AJ_G0035489.1 mouse_genomes_project X 2130511 2146901 - MGP_AJ_P0095528 Ppp1r3f protein_coding protein_coding MGP_AJ_T0095529.1 MGP_AJ_G0035489.1 mouse_genomes_project X 2130781 2135762 - Ppp1r3f protein_coding processed_transcript MGP_AJ_T0095530.1 MGP_AJ_G0035489.1 mouse_genomes_project X 2131801 2144323 - MGP_AJ_P0095530 Ppp1r3f protein_coding protein_coding MGP_AJ_T0095531.1 MGP_AJ_G0035489.1 mouse_genomes_project X 2133789 2135793 - Ppp1r3f protein_coding processed_transcript MGP_AJ_T0097435.1 MGP_AJ_G0036042.1 mouse_genomes_project X 130631588 130658426 + MGP_AJ_P0097435 Cstf2 protein_coding protein_coding MGP_AJ_T0097436.1 MGP_AJ_G0036042.1 mouse_genomes_project X 130631598 130659199 + MGP_AJ_P0097436 Cstf2 protein_coding protein_coding MGP_AJ_T0097437.1 MGP_AJ_G0036042.1 mouse_genomes_project X 130631616 130648223 + MGP_AJ_P0097437 Cstf2 protein_coding protein_coding MGP_AJ_T0097438.1 MGP_AJ_G0036042.1 mouse_genomes_project X 130631712 130633888 + Cstf2 protein_coding processed_transcript MGP_AJ_T0097439.1 MGP_AJ_G0036042.1 mouse_genomes_project X 130631735 130659199 + Cstf2 protein_coding retained_intron MGP_AJ_T0097440.1 MGP_AJ_G0036042.1 mouse_genomes_project X 130631735 130635025 + MGP_AJ_P0097440 Cstf2 protein_coding protein_coding MGP_AJ_T0097441.1 MGP_AJ_G0036042.1 mouse_genomes_project X 130634788 130646633 + MGP_AJ_P0097441 Cstf2 protein_coding protein_coding MGP_AJ_T0097442.1 MGP_AJ_G0036042.1 mouse_genomes_project X 130638652 130646670 + MGP_AJ_P0097442 Cstf2 protein_coding protein_coding MGP_AJ_T0096708.1 MGP_AJ_G0035825.1 mouse_genomes_project X 70350071 70353027 - MGP_AJ_P0096708 Ubl4a protein_coding protein_coding MGP_AJ_T0096709.1 MGP_AJ_G0035825.1 mouse_genomes_project X 70350072 70352912 - Ubl4a protein_coding processed_transcript MGP_AJ_T0096710.1 MGP_AJ_G0035825.1 mouse_genomes_project X 70351625 70352820 - MGP_AJ_P0096710 Ubl4a protein_coding nonsense_mediated_decay MGP_AJ_T0096711.1 MGP_AJ_G0035825.1 mouse_genomes_project X 70351663 70352850 - Ubl4a protein_coding retained_intron MGP_AJ_T0096712.1 MGP_AJ_G0035825.1 mouse_genomes_project X 70351818 70359224 - MGP_AJ_P0096712 Ubl4a protein_coding protein_coding MGP_AJ_T0096713.1 MGP_AJ_G0035825.1 mouse_genomes_project X 70352096 70352867 - Ubl4a protein_coding retained_intron MGP_AJ_T0096714.1 MGP_AJ_G0035825.1 mouse_genomes_project X 70352150 70352857 - Ubl4a protein_coding processed_transcript MGP_AJ_T0097189.1 MGP_AJ_G0035956.1 mouse_genomes_project X 98721256 98726163 - MGP_AJ_P0097189 Rps4x protein_coding protein_coding MGP_AJ_T0097190.1 MGP_AJ_G0035956.1 mouse_genomes_project X 98721389 98723053 - Rps4x protein_coding retained_intron MGP_AJ_T0095743.1 MGP_AJ_G0035540.1 mouse_genomes_project X 5110832 5179974 + MGP_AJ_P0095743 Otc protein_coding protein_coding MGP_AJ_T0095744.1 MGP_AJ_G0035540.1 mouse_genomes_project X 5110894 5175797 + MGP_AJ_P0095744 Otc protein_coding protein_coding MGP_AJ_T0016760.1 MGP_AJ_G0014855.1 mouse_genomes_project X 136686428 136686534 - processed_pseudogene processed_pseudogene MGP_AJ_T0096611.1 MGP_AJ_G0035815.1 mouse_genomes_project X 70206186 70234179 - MGP_AJ_P0096611 Flna protein_coding protein_coding MGP_AJ_T0096612.1 MGP_AJ_G0035815.1 mouse_genomes_project X 70206186 70229106 - MGP_AJ_P0096612 Flna protein_coding nonsense_mediated_decay MGP_AJ_T0096613.1 MGP_AJ_G0035815.1 mouse_genomes_project X 70206188 70229242 - MGP_AJ_P0096613 Flna protein_coding protein_coding MGP_AJ_T0096614.1 MGP_AJ_G0035815.1 mouse_genomes_project X 70206266 70229263 - MGP_AJ_P0096614 Flna protein_coding protein_coding MGP_AJ_T0096615.1 MGP_AJ_G0035815.1 mouse_genomes_project X 70206514 70229072 - MGP_AJ_P0096615 Flna protein_coding protein_coding MGP_AJ_T0096616.1 MGP_AJ_G0035815.1 mouse_genomes_project X 70207535 70209205 - Flna protein_coding processed_transcript MGP_AJ_T0096617.1 MGP_AJ_G0035815.1 mouse_genomes_project X 70207559 70209515 - Flna protein_coding retained_intron MGP_AJ_T0096618.1 MGP_AJ_G0035815.1 mouse_genomes_project X 70209173 70210346 - Flna protein_coding retained_intron MGP_AJ_T0096619.1 MGP_AJ_G0035815.1 mouse_genomes_project X 70209597 70211215 - MGP_AJ_P0096619 Flna protein_coding protein_coding MGP_AJ_T0096620.1 MGP_AJ_G0035815.1 mouse_genomes_project X 70209962 70210694 - Flna protein_coding retained_intron MGP_AJ_T0096621.1 MGP_AJ_G0035815.1 mouse_genomes_project X 70210577 70211789 - MGP_AJ_P0096621 Flna protein_coding nonsense_mediated_decay MGP_AJ_T0096622.1 MGP_AJ_G0035815.1 mouse_genomes_project X 70210811 70211525 - Flna protein_coding retained_intron MGP_AJ_T0096623.1 MGP_AJ_G0035815.1 mouse_genomes_project X 70211105 70213296 - MGP_AJ_P0096623 Flna protein_coding protein_coding MGP_AJ_T0096624.1 MGP_AJ_G0035815.1 mouse_genomes_project X 70213421 70218689 - Flna protein_coding processed_transcript MGP_AJ_T0096625.1 MGP_AJ_G0035815.1 mouse_genomes_project X 70218807 70220650 - Flna protein_coding processed_transcript MGP_AJ_T0016315.1 MGP_AJ_G0014410.1 mouse_genomes_project X 41113976 41115509 + processed_pseudogene processed_pseudogene MGP_AJ_T0097787.1 MGP_AJ_G0036144.1 mouse_genomes_project X 147453344 147529120 - MGP_AJ_P0097787 Apex2 protein_coding protein_coding MGP_AJ_T0097788.1 MGP_AJ_G0036144.1 mouse_genomes_project X 147454177 147527358 - MGP_AJ_P0097788 Apex2 protein_coding protein_coding MGP_AJ_T0097793.1 MGP_AJ_G0036144.1 mouse_genomes_project X 147503195 147529120 - MGP_AJ_P0097793 Apex2 protein_coding protein_coding MGP_AJ_T0097794.1 MGP_AJ_G0036144.1 mouse_genomes_project X 147505840 147527361 - Apex2 protein_coding retained_intron MGP_AJ_T0097795.1 MGP_AJ_G0036144.1 mouse_genomes_project X 147505841 147529144 - Apex2 protein_coding processed_transcript MGP_AJ_T0097796.1 MGP_AJ_G0036144.1 mouse_genomes_project X 147505841 147527372 - MGP_AJ_P0097796 Apex2 protein_coding protein_coding MGP_AJ_T0097797.1 MGP_AJ_G0036144.1 mouse_genomes_project X 147505841 147527425 - MGP_AJ_P0097797 Apex2 protein_coding protein_coding MGP_AJ_T0097798.1 MGP_AJ_G0036144.1 mouse_genomes_project X 147506792 147525611 - Apex2 protein_coding processed_transcript MGP_AJ_T0097799.1 MGP_AJ_G0036144.1 mouse_genomes_project X 147506882 147527347 - MGP_AJ_P0097799 Apex2 protein_coding protein_coding MGP_AJ_T0097800.1 MGP_AJ_G0036144.1 mouse_genomes_project X 147523666 147527357 - MGP_AJ_P0097800 Apex2 protein_coding protein_coding MGP_AJ_T0016681.1 MGP_AJ_G0014776.1 mouse_genomes_project X 114443231 114443435 - processed_pseudogene processed_pseudogene MGP_AJ_T0016232.1 MGP_AJ_G0014327.1 mouse_genomes_project X 8315069 8315882 - processed_pseudogene processed_pseudogene MGP_AJ_T0016626.1 MGP_AJ_G0014721.1 mouse_genomes_project X 103466787 103467079 + processed_pseudogene processed_pseudogene MGP_AJ_T0011767.1 MGP_AJ_G0009889.1 mouse_genomes_project X 100194513 100194606 + Gm27987 misc_RNA misc_RNA MGP_AJ_T0101908.1 MGP_AJ_G0039771.1 mouse_genomes_project X 127026176 127026885 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0095952.1 MGP_AJ_G0035607.1 mouse_genomes_project X 32083207 32084731 - protein_coding retained_intron MGP_AJ_T0095953.1 MGP_AJ_G0035607.1 mouse_genomes_project X 32084101 32084721 - protein_coding retained_intron MGP_AJ_T0016536.1 MGP_AJ_G0014631.1 mouse_genomes_project X 91052334 91052941 - processed_pseudogene processed_pseudogene MGP_AJ_T0095615.1 MGP_AJ_G0035503.1 mouse_genomes_project X 2403017 2419007 + MGP_AJ_P0095615 Kcnd1 protein_coding protein_coding MGP_AJ_T0095616.1 MGP_AJ_G0035503.1 mouse_genomes_project X 2403035 2403996 + Kcnd1 protein_coding processed_transcript MGP_AJ_T0096316.1 MGP_AJ_G0035740.1 mouse_genomes_project X 55995781 56106445 - MGP_AJ_P0096316 Gm7073 protein_coding protein_coding MGP_AJ_T0096683.1 MGP_AJ_G0035821.1 mouse_genomes_project X 70289159 70296340 + MGP_AJ_P0096683 Gdi1 protein_coding protein_coding MGP_AJ_T0096684.1 MGP_AJ_G0035821.1 mouse_genomes_project X 70289173 70296338 + Gdi1 protein_coding retained_intron MGP_AJ_T0096685.1 MGP_AJ_G0035821.1 mouse_genomes_project X 70289417 70291169 + Gdi1 protein_coding processed_transcript MGP_AJ_T0096686.1 MGP_AJ_G0035821.1 mouse_genomes_project X 70289428 70296336 + Gdi1 protein_coding retained_intron MGP_AJ_T0096687.1 MGP_AJ_G0035821.1 mouse_genomes_project X 70289474 70291306 + MGP_AJ_P0096687 Gdi1 protein_coding protein_coding MGP_AJ_T0096688.1 MGP_AJ_G0035821.1 mouse_genomes_project X 70289989 70291347 + Gdi1 protein_coding processed_transcript MGP_AJ_T0096689.1 MGP_AJ_G0035821.1 mouse_genomes_project X 70291310 70294037 + Gdi1 protein_coding retained_intron MGP_AJ_T0096690.1 MGP_AJ_G0035821.1 mouse_genomes_project X 70293317 70295626 + MGP_AJ_P0096690 Gdi1 protein_coding protein_coding MGP_AJ_T0096691.1 MGP_AJ_G0035821.1 mouse_genomes_project X 70294321 70295406 + Gdi1 protein_coding processed_transcript MGP_AJ_T0096692.1 MGP_AJ_G0035821.1 mouse_genomes_project X 70294850 70295503 + Gdi1 protein_coding processed_transcript MGP_AJ_T0016243.1 MGP_AJ_G0014338.1 mouse_genomes_project X 12239948 12242366 + processed_pseudogene processed_pseudogene MGP_AJ_T0016687.1 MGP_AJ_G0014782.1 mouse_genomes_project X 116448833 116450122 + processed_pseudogene processed_pseudogene MGP_AJ_T0095824.1 MGP_AJ_G0035566.1 mouse_genomes_project X 15342101 15381051 + MGP_AJ_P0095824 Rp2 protein_coding protein_coding MGP_AJ_T0095825.1 MGP_AJ_G0035566.1 mouse_genomes_project X 15342101 15381047 + MGP_AJ_P0095825 Rp2 protein_coding protein_coding MGP_AJ_T0095826.1 MGP_AJ_G0035566.1 mouse_genomes_project X 15342179 15381047 + MGP_AJ_P0095826 Rp2 protein_coding protein_coding MGP_AJ_T0095827.1 MGP_AJ_G0035566.1 mouse_genomes_project X 15342195 15385876 + MGP_AJ_P0095827 Rp2 protein_coding nonsense_mediated_decay MGP_AJ_T0095828.1 MGP_AJ_G0035566.1 mouse_genomes_project X 15342239 15385853 + MGP_AJ_P0095828 Rp2 protein_coding nonsense_mediated_decay MGP_AJ_T0016388.1 MGP_AJ_G0014483.1 mouse_genomes_project X 60446922 60447780 - processed_pseudogene processed_pseudogene MGP_AJ_T0097581.1 MGP_AJ_G0036085.1 mouse_genomes_project X 133562783 133585475 - MGP_AJ_P0097581 Glra4 protein_coding protein_coding MGP_AJ_T0097582.1 MGP_AJ_G0036085.1 mouse_genomes_project X 133572193 133585475 - Glra4 protein_coding retained_intron MGP_AJ_T0016789.1 MGP_AJ_G0014884.1 mouse_genomes_project X 141094754 141095577 - processed_pseudogene processed_pseudogene MGP_AJ_T0095582.1 MGP_AJ_G0035499.1 mouse_genomes_project X 2305678 2308272 + MGP_AJ_P0095582 Praf2 protein_coding protein_coding MGP_AJ_T0016453.1 MGP_AJ_G0014548.1 mouse_genomes_project X 73872639 73873408 - processed_pseudogene processed_pseudogene MGP_AJ_T0018643.1 MGP_AJ_G0015763.1 mouse_genomes_project X 101604860 101637775 - 5530601H04Rik processed_transcript processed_transcript MGP_AJ_T0018644.1 MGP_AJ_G0015763.1 mouse_genomes_project X 101606471 101637725 - 5530601H04Rik processed_transcript processed_transcript MGP_AJ_T0018645.1 MGP_AJ_G0015763.1 mouse_genomes_project X 101606480 101637721 - 5530601H04Rik processed_transcript processed_transcript MGP_AJ_T0018646.1 MGP_AJ_G0015763.1 mouse_genomes_project X 101608499 101637803 - 5530601H04Rik processed_transcript processed_transcript MGP_AJ_T0018647.1 MGP_AJ_G0015763.1 mouse_genomes_project X 101609046 101637803 - 5530601H04Rik processed_transcript processed_transcript MGP_AJ_T0018648.1 MGP_AJ_G0015763.1 mouse_genomes_project X 101610304 101637766 - 5530601H04Rik processed_transcript processed_transcript MGP_AJ_T0018649.1 MGP_AJ_G0015763.1 mouse_genomes_project X 101610916 101637722 - 5530601H04Rik processed_transcript processed_transcript MGP_AJ_T0018650.1 MGP_AJ_G0015763.1 mouse_genomes_project X 101611448 101637734 - 5530601H04Rik processed_transcript processed_transcript MGP_AJ_T0018651.1 MGP_AJ_G0015763.1 mouse_genomes_project X 101611646 101637714 - 5530601H04Rik processed_transcript processed_transcript MGP_AJ_T0018652.1 MGP_AJ_G0015763.1 mouse_genomes_project X 101611721 101637787 - 5530601H04Rik processed_transcript processed_transcript MGP_AJ_T0018653.1 MGP_AJ_G0015763.1 mouse_genomes_project X 101630524 101637783 - 5530601H04Rik processed_transcript processed_transcript MGP_AJ_T0018654.1 MGP_AJ_G0015763.1 mouse_genomes_project X 101635543 101637773 - 5530601H04Rik processed_transcript retained_intron MGP_AJ_T0018655.1 MGP_AJ_G0015763.1 mouse_genomes_project X 101636790 101646644 - 5530601H04Rik processed_transcript processed_transcript MGP_AJ_T0018656.1 MGP_AJ_G0015763.1 mouse_genomes_project X 101642263 101643029 - 5530601H04Rik processed_transcript processed_transcript MGP_AJ_T0018657.1 MGP_AJ_G0015763.1 mouse_genomes_project X 101642483 101646841 - 5530601H04Rik processed_transcript processed_transcript MGP_AJ_T0018658.1 MGP_AJ_G0015763.1 mouse_genomes_project X 101644496 101646668 - 5530601H04Rik processed_transcript processed_transcript MGP_AJ_T0016700.1 MGP_AJ_G0014795.1 mouse_genomes_project X 119223762 119224503 + processed_pseudogene processed_pseudogene MGP_AJ_T0016722.1 MGP_AJ_G0014817.1 mouse_genomes_project X 129593291 129594079 - processed_pseudogene processed_pseudogene MGP_AJ_T0101609.1 MGP_AJ_G0039575.1 mouse_genomes_project X 32082476 32082607 - Snora69 snoRNA snoRNA MGP_AJ_T0016504.1 MGP_AJ_G0014599.1 mouse_genomes_project X 85402684 85403726 - processed_pseudogene processed_pseudogene MGP_AJ_T0018623.1 MGP_AJ_G0015755.1 mouse_genomes_project X 47819044 47821075 - Kis2 processed_transcript processed_transcript MGP_AJ_T0018624.1 MGP_AJ_G0015755.1 mouse_genomes_project X 47819044 47821075 - Kis2 processed_transcript processed_transcript MGP_AJ_T0018625.1 MGP_AJ_G0015755.1 mouse_genomes_project X 47819044 47821075 - Kis2 processed_transcript processed_transcript MGP_AJ_T0018626.1 MGP_AJ_G0015755.1 mouse_genomes_project X 47819046 47821442 - Kis2 processed_transcript processed_transcript MGP_AJ_T0097292.1 MGP_AJ_G0035988.1 mouse_genomes_project X 103481931 103485498 - MGP_AJ_P0097292 Zcchc5 protein_coding protein_coding MGP_AJ_T0016662.1 MGP_AJ_G0014757.1 mouse_genomes_project X 111309425 111309863 - processed_pseudogene processed_pseudogene MGP_AJ_T0011760.1 MGP_AJ_G0009882.1 mouse_genomes_project X 79010343 79010446 - Gm23671 misc_RNA misc_RNA MGP_AJ_T0097549.1 MGP_AJ_G0036071.1 mouse_genomes_project X 132793872 132795452 + MGP_AJ_P0097549 protein_coding protein_coding MGP_AJ_T0096975.1 MGP_AJ_G0035903.1 mouse_genomes_project X 91969195 91995310 - MGP_AJ_P0096975 Amer1 protein_coding protein_coding MGP_AJ_T0100320.1 MGP_AJ_G0038286.1 mouse_genomes_project X 8945647 8945738 - Gm25552 snRNA snRNA MGP_AJ_T0097407.1 MGP_AJ_G0036031.1 mouse_genomes_project X 122642859 122647654 - MGP_AJ_P0097407 protein_coding protein_coding MGP_AJ_T0016718.1 MGP_AJ_G0014813.1 mouse_genomes_project X 128395518 128397722 - processed_pseudogene processed_pseudogene MGP_AJ_T0096920.1 MGP_AJ_G0035892.1 mouse_genomes_project X 90438392 90445300 + MGP_AJ_P0096920 AU015836 protein_coding protein_coding MGP_AJ_T0096921.1 MGP_AJ_G0035892.1 mouse_genomes_project X 90438407 90445300 + MGP_AJ_P0096921 AU015836 protein_coding nonsense_mediated_decay MGP_AJ_T0096922.1 MGP_AJ_G0035892.1 mouse_genomes_project X 90438415 90439392 + MGP_AJ_P0096922 AU015836 protein_coding protein_coding MGP_AJ_T0096923.1 MGP_AJ_G0035892.1 mouse_genomes_project X 90439375 90441396 + AU015836 protein_coding processed_transcript MGP_AJ_T0096924.1 MGP_AJ_G0035892.1 mouse_genomes_project X 90439529 90444901 + MGP_AJ_P0096924 AU015836 protein_coding protein_coding MGP_AJ_T0016461.1 MGP_AJ_G0014556.1 mouse_genomes_project X 74807680 74808664 - processed_pseudogene processed_pseudogene MGP_AJ_T0096850.1 MGP_AJ_G0035866.1 mouse_genomes_project X 74869528 74871167 + MGP_AJ_P0096850 Fam47c protein_coding protein_coding MGP_AJ_T0096222.1 MGP_AJ_G0035707.1 mouse_genomes_project X 48539888 48547888 + MGP_AJ_P0096222 Etd protein_coding protein_coding MGP_AJ_T0016300.1 MGP_AJ_G0014395.1 mouse_genomes_project X 37154238 37156767 - processed_pseudogene processed_pseudogene MGP_AJ_T0016586.1 MGP_AJ_G0014681.1 mouse_genomes_project X 99640262 99641569 + processed_pseudogene processed_pseudogene MGP_AJ_T0018602.1 MGP_AJ_G0015746.1 mouse_genomes_project X 2130161 2178137 - Gm36995 processed_transcript retained_intron MGP_AJ_T0098167.1 MGP_AJ_G0036232.1 mouse_genomes_project X 163505736 163660933 + MGP_AJ_P0098167 Gpm6b protein_coding protein_coding MGP_AJ_T0098168.1 MGP_AJ_G0036232.1 mouse_genomes_project X 163505797 163660933 + MGP_AJ_P0098168 Gpm6b protein_coding protein_coding MGP_AJ_T0098169.1 MGP_AJ_G0036232.1 mouse_genomes_project X 163505797 163660933 + MGP_AJ_P0098169 Gpm6b protein_coding protein_coding MGP_AJ_T0098170.1 MGP_AJ_G0036232.1 mouse_genomes_project X 163616651 163655946 + MGP_AJ_P0098170 Gpm6b protein_coding nonsense_mediated_decay MGP_AJ_T0098171.1 MGP_AJ_G0036232.1 mouse_genomes_project X 163616651 163660933 + MGP_AJ_P0098171 Gpm6b protein_coding protein_coding MGP_AJ_T0098172.1 MGP_AJ_G0036232.1 mouse_genomes_project X 163616651 163660933 + MGP_AJ_P0098172 Gpm6b protein_coding protein_coding MGP_AJ_T0098173.1 MGP_AJ_G0036232.1 mouse_genomes_project X 163616651 163660933 + MGP_AJ_P0098173 Gpm6b protein_coding protein_coding MGP_AJ_T0098174.1 MGP_AJ_G0036232.1 mouse_genomes_project X 163616651 163660933 + MGP_AJ_P0098174 Gpm6b protein_coding protein_coding MGP_AJ_T0098175.1 MGP_AJ_G0036232.1 mouse_genomes_project X 163616651 163660933 + MGP_AJ_P0098175 Gpm6b protein_coding protein_coding MGP_AJ_T0098176.1 MGP_AJ_G0036232.1 mouse_genomes_project X 163616651 163660933 + MGP_AJ_P0098176 Gpm6b protein_coding protein_coding MGP_AJ_T0098177.1 MGP_AJ_G0036232.1 mouse_genomes_project X 163616651 163655946 + MGP_AJ_P0098177 Gpm6b protein_coding nonsense_mediated_decay MGP_AJ_T0098178.1 MGP_AJ_G0036232.1 mouse_genomes_project X 163616801 163645181 + Gpm6b protein_coding retained_intron MGP_AJ_T0016329.1 MGP_AJ_G0014424.1 mouse_genomes_project X 46077072 46077929 + processed_pseudogene processed_pseudogene MGP_AJ_T0016822.1 MGP_AJ_G0014917.1 mouse_genomes_project X 148117948 148118333 + processed_pseudogene processed_pseudogene MGP_AJ_T0097430.1 MGP_AJ_G0036040.1 mouse_genomes_project X 130481117 130503245 + MGP_AJ_P0097430 Srpx2 protein_coding protein_coding MGP_AJ_T0016737.1 MGP_AJ_G0014832.1 mouse_genomes_project X 132749981 132750701 + processed_pseudogene processed_pseudogene MGP_AJ_T0096097.1 MGP_AJ_G0035667.1 mouse_genomes_project X 42802504 42878842 - MGP_AJ_P0096097 Smarca1 protein_coding protein_coding MGP_AJ_T0096098.1 MGP_AJ_G0035667.1 mouse_genomes_project X 42802506 42878842 - MGP_AJ_P0096098 Smarca1 protein_coding protein_coding MGP_AJ_T0096099.1 MGP_AJ_G0035667.1 mouse_genomes_project X 42802769 42878875 - MGP_AJ_P0096099 Smarca1 protein_coding protein_coding MGP_AJ_T0096100.1 MGP_AJ_G0035667.1 mouse_genomes_project X 42834443 42878719 - MGP_AJ_P0096100 Smarca1 protein_coding protein_coding MGP_AJ_T0096101.1 MGP_AJ_G0035667.1 mouse_genomes_project X 42860095 42878755 - MGP_AJ_P0096101 Smarca1 protein_coding protein_coding MGP_AJ_T0096102.1 MGP_AJ_G0035667.1 mouse_genomes_project X 42873476 42879264 - MGP_AJ_P0096102 Smarca1 protein_coding protein_coding MGP_AJ_T0096103.1 MGP_AJ_G0035667.1 mouse_genomes_project X 42876136 42879297 - Smarca1 protein_coding processed_transcript MGP_AJ_T0097840.1 MGP_AJ_G0036151.1 mouse_genomes_project X 148029371 148038782 - MGP_AJ_P0097840 Tsr2 protein_coding protein_coding MGP_AJ_T0097841.1 MGP_AJ_G0036151.1 mouse_genomes_project X 148029372 148038782 - MGP_AJ_P0097841 Tsr2 protein_coding protein_coding MGP_AJ_T0097842.1 MGP_AJ_G0036151.1 mouse_genomes_project X 148031758 148038782 - MGP_AJ_P0097842 Tsr2 protein_coding nonsense_mediated_decay MGP_AJ_T0097843.1 MGP_AJ_G0036151.1 mouse_genomes_project X 148031969 148038762 - Tsr2 protein_coding processed_transcript MGP_AJ_T0009400.1 MGP_AJ_G0007544.1 mouse_genomes_project X 87509034 87509658 + Gm14773 lincRNA lincRNA MGP_AJ_T0097267.1 MGP_AJ_G0035980.1 mouse_genomes_project X 102567396 102574060 + MGP_AJ_P0097267 Cox7b protein_coding protein_coding MGP_AJ_T0097268.1 MGP_AJ_G0035980.1 mouse_genomes_project X 102567412 102567826 + Cox7b protein_coding processed_transcript MGP_AJ_T0097269.1 MGP_AJ_G0035980.1 mouse_genomes_project X 102571000 102573568 + Cox7b protein_coding retained_intron MGP_AJ_T0096000.1 MGP_AJ_G0035640.1 mouse_genomes_project X 32908760 32911841 - MGP_AJ_P0096000 Rhox6 protein_coding protein_coding MGP_AJ_T0096388.1 MGP_AJ_G0035766.1 mouse_genomes_project X 67301608 67380409 - MGP_AJ_P0096388 Cd99l2 protein_coding protein_coding MGP_AJ_T0096389.1 MGP_AJ_G0035766.1 mouse_genomes_project X 67301608 67380205 - MGP_AJ_P0096389 Cd99l2 protein_coding protein_coding MGP_AJ_T0096390.1 MGP_AJ_G0035766.1 mouse_genomes_project X 67301608 67380409 - MGP_AJ_P0096390 Cd99l2 protein_coding protein_coding MGP_AJ_T0096391.1 MGP_AJ_G0035766.1 mouse_genomes_project X 67304170 67380409 - MGP_AJ_P0096391 Cd99l2 protein_coding protein_coding MGP_AJ_T0096392.1 MGP_AJ_G0035766.1 mouse_genomes_project X 67321534 67380209 - Cd99l2 protein_coding retained_intron MGP_AJ_T0096393.1 MGP_AJ_G0035766.1 mouse_genomes_project X 67379458 67380165 - Cd99l2 protein_coding processed_transcript MGP_AJ_T0016450.1 MGP_AJ_G0014545.1 mouse_genomes_project X 73380519 73381047 + processed_pseudogene processed_pseudogene MGP_AJ_T0096047.1 MGP_AJ_G0035656.1 mouse_genomes_project X 36817758 36837763 - MGP_AJ_P0096047 Thoc2 protein_coding protein_coding MGP_AJ_T0096048.1 MGP_AJ_G0035656.1 mouse_genomes_project X 36819876 36838137 - MGP_AJ_P0096048 Thoc2 protein_coding nonsense_mediated_decay MGP_AJ_T0096049.1 MGP_AJ_G0035656.1 mouse_genomes_project X 36820250 36829533 - MGP_AJ_P0096049 Thoc2 protein_coding protein_coding MGP_AJ_T0096050.1 MGP_AJ_G0035656.1 mouse_genomes_project X 36825098 36830021 - MGP_AJ_P0096050 Thoc2 protein_coding protein_coding MGP_AJ_T0096051.1 MGP_AJ_G0035656.1 mouse_genomes_project X 36825110 36829685 - MGP_AJ_P0096051 Thoc2 protein_coding protein_coding MGP_AJ_T0096052.1 MGP_AJ_G0035656.1 mouse_genomes_project X 36825731 36936792 - MGP_AJ_P0096052 Thoc2 protein_coding protein_coding MGP_AJ_T0096053.1 MGP_AJ_G0035656.1 mouse_genomes_project X 36826282 36837232 - Thoc2 protein_coding processed_transcript MGP_AJ_T0096054.1 MGP_AJ_G0035656.1 mouse_genomes_project X 36835520 36837839 - Thoc2 protein_coding retained_intron MGP_AJ_T0096055.1 MGP_AJ_G0035656.1 mouse_genomes_project X 36837714 36887352 - Thoc2 protein_coding processed_transcript MGP_AJ_T0096056.1 MGP_AJ_G0035656.1 mouse_genomes_project X 36838110 36855020 - Thoc2 protein_coding retained_intron MGP_AJ_T0096057.1 MGP_AJ_G0035656.1 mouse_genomes_project X 36847642 36855020 - Thoc2 protein_coding retained_intron MGP_AJ_T0096058.1 MGP_AJ_G0035656.1 mouse_genomes_project X 36884984 36936822 - Thoc2 protein_coding retained_intron MGP_AJ_T0096059.1 MGP_AJ_G0035656.1 mouse_genomes_project X 36888522 36936807 - MGP_AJ_P0096059 Thoc2 protein_coding nonsense_mediated_decay MGP_AJ_T0096060.1 MGP_AJ_G0035656.1 mouse_genomes_project X 36902738 36947266 - MGP_AJ_P0096060 Thoc2 protein_coding protein_coding MGP_AJ_T0096061.1 MGP_AJ_G0035656.1 mouse_genomes_project X 36902742 36921174 - MGP_AJ_P0096061 Thoc2 protein_coding nonsense_mediated_decay MGP_AJ_T0096062.1 MGP_AJ_G0035656.1 mouse_genomes_project X 36909772 36922629 - Thoc2 protein_coding retained_intron MGP_AJ_T0096229.1 MGP_AJ_G0035713.1 mouse_genomes_project X 48941891 48944238 - MGP_AJ_P0096229 Zfp36l3 protein_coding protein_coding MGP_AJ_T0016323.1 MGP_AJ_G0014418.1 mouse_genomes_project X 44174387 44174736 + processed_pseudogene processed_pseudogene MGP_AJ_T0095538.1 MGP_AJ_G0035492.1 mouse_genomes_project X 2179816 2208888 + MGP_AJ_P0095538 Cacna1f protein_coding nonsense_mediated_decay MGP_AJ_T0095539.1 MGP_AJ_G0035492.1 mouse_genomes_project X 2179831 2191047 + Cacna1f protein_coding retained_intron MGP_AJ_T0095540.1 MGP_AJ_G0035492.1 mouse_genomes_project X 2179832 2208891 + MGP_AJ_P0095540 Cacna1f protein_coding protein_coding MGP_AJ_T0095541.1 MGP_AJ_G0035492.1 mouse_genomes_project X 2179853 2192071 + MGP_AJ_P0095541 Cacna1f protein_coding protein_coding MGP_AJ_T0095542.1 MGP_AJ_G0035492.1 mouse_genomes_project X 2179862 2208891 + MGP_AJ_P0095542 Cacna1f protein_coding protein_coding MGP_AJ_T0095543.1 MGP_AJ_G0035492.1 mouse_genomes_project X 2179877 2208889 + Cacna1f protein_coding retained_intron MGP_AJ_T0095544.1 MGP_AJ_G0035492.1 mouse_genomes_project X 2199167 2200879 + Cacna1f protein_coding retained_intron MGP_AJ_T0095545.1 MGP_AJ_G0035492.1 mouse_genomes_project X 2200131 2203941 + MGP_AJ_P0095545 Cacna1f protein_coding protein_coding MGP_AJ_T0095546.1 MGP_AJ_G0035492.1 mouse_genomes_project X 2200131 2204194 + MGP_AJ_P0095546 Cacna1f protein_coding protein_coding MGP_AJ_T0095547.1 MGP_AJ_G0035492.1 mouse_genomes_project X 2201126 2203457 + Cacna1f protein_coding retained_intron MGP_AJ_T0095548.1 MGP_AJ_G0035492.1 mouse_genomes_project X 2204970 2206684 + Cacna1f protein_coding retained_intron MGP_AJ_T0096416.1 MGP_AJ_G0035775.1 mouse_genomes_project X 68165315 68182519 - MGP_AJ_P0096416 Gabre protein_coding unknown_likely_coding MGP_AJ_T0096417.1 MGP_AJ_G0035775.1 mouse_genomes_project X 68169231 68177629 - Gabre protein_coding processed_transcript MGP_AJ_T0096418.1 MGP_AJ_G0035775.1 mouse_genomes_project X 68176833 68182621 - Gabre protein_coding retained_intron MGP_AJ_T0096225.1 MGP_AJ_G0035710.1 mouse_genomes_project X 48820874 48848716 + MGP_AJ_P0096225 Gm14597 protein_coding protein_coding MGP_AJ_T0096226.1 MGP_AJ_G0035710.1 mouse_genomes_project X 48841195 48848716 + MGP_AJ_P0096226 Gm14597 protein_coding protein_coding MGP_AJ_T0016607.1 MGP_AJ_G0014702.1 mouse_genomes_project X 100509094 100510543 - processed_pseudogene processed_pseudogene MGP_AJ_T0016762.1 MGP_AJ_G0014857.1 mouse_genomes_project X 137372122 137372951 - processed_pseudogene processed_pseudogene MGP_AJ_T0009385.1 MGP_AJ_G0007534.1 mouse_genomes_project X 48143759 48145181 - Gm28730 lincRNA lincRNA MGP_AJ_T0009386.1 MGP_AJ_G0007534.1 mouse_genomes_project X 48143767 48145165 - Gm28730 lincRNA lincRNA MGP_AJ_T0009387.1 MGP_AJ_G0007534.1 mouse_genomes_project X 48143872 48145725 - Gm28730 lincRNA lincRNA MGP_AJ_T0016204.1 MGP_AJ_G0014299.1 mouse_genomes_project X 2663169 2663598 - processed_pseudogene processed_pseudogene MGP_AJ_T0016467.1 MGP_AJ_G0014562.1 mouse_genomes_project X 76337040 76337199 - processed_pseudogene processed_pseudogene MGP_AJ_T0097468.1 MGP_AJ_G0036050.1 mouse_genomes_project X 131056110 131072322 - MGP_AJ_P0097468 Taf7l protein_coding protein_coding MGP_AJ_T0097469.1 MGP_AJ_G0036050.1 mouse_genomes_project X 131056550 131071012 - MGP_AJ_P0097469 Taf7l protein_coding protein_coding MGP_AJ_T0097470.1 MGP_AJ_G0036050.1 mouse_genomes_project X 131065891 131071007 - Taf7l protein_coding processed_transcript MGP_AJ_T0097943.1 MGP_AJ_G0036175.1 mouse_genomes_project X 150747801 150766511 + MGP_AJ_P0097943 2210013O21Rik protein_coding protein_coding MGP_AJ_T0097944.1 MGP_AJ_G0036175.1 mouse_genomes_project X 150747821 150767167 + MGP_AJ_P0097944 2210013O21Rik protein_coding protein_coding MGP_AJ_T0097945.1 MGP_AJ_G0036175.1 mouse_genomes_project X 150747838 150753399 + MGP_AJ_P0097945 2210013O21Rik protein_coding protein_coding MGP_AJ_T0097946.1 MGP_AJ_G0036175.1 mouse_genomes_project X 150748150 150766369 + 2210013O21Rik protein_coding processed_transcript MGP_AJ_T0101912.1 MGP_AJ_G0039775.1 mouse_genomes_project X 147145674 147146644 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0016684.1 MGP_AJ_G0014779.1 mouse_genomes_project X 114788063 114789868 - processed_pseudogene processed_pseudogene MGP_AJ_T0102953.1 MGP_AJ_G0040693.1 mouse_genomes_project X 82531020 82532053 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0095715.1 MGP_AJ_G0035529.1 mouse_genomes_project X 3870830 3872611 + MGP_AJ_P0095715 4930402K13Rik protein_coding protein_coding MGP_AJ_T0016609.1 MGP_AJ_G0014704.1 mouse_genomes_project X 100961463 100961928 - processed_pseudogene processed_pseudogene MGP_AJ_T0095753.1 MGP_AJ_G0035543.1 mouse_genomes_project X 6175288 6175798 + MGP_AJ_P0095753 Gm14501 protein_coding protein_coding MGP_AJ_T0096755.1 MGP_AJ_G0035834.1 mouse_genomes_project X 70734240 70742575 + MGP_AJ_P0096755 protein_coding protein_coding MGP_AJ_T0016812.1 MGP_AJ_G0014907.1 mouse_genomes_project X 143526985 143527921 + processed_pseudogene processed_pseudogene MGP_AJ_T0016642.1 MGP_AJ_G0014737.1 mouse_genomes_project X 108186284 108189203 + processed_pseudogene processed_pseudogene MGP_AJ_T0016804.1 MGP_AJ_G0014899.1 mouse_genomes_project X 142851911 142852445 + processed_pseudogene processed_pseudogene MGP_AJ_T0096917.1 MGP_AJ_G0035891.1 mouse_genomes_project X 90233175 90304404 - MGP_AJ_P0096917 Pdk3 protein_coding protein_coding MGP_AJ_T0096918.1 MGP_AJ_G0035891.1 mouse_genomes_project X 90233664 90237693 - Pdk3 protein_coding processed_transcript MGP_AJ_T0096919.1 MGP_AJ_G0035891.1 mouse_genomes_project X 90249978 90257434 - Pdk3 protein_coding processed_transcript MGP_AJ_T0096037.1 MGP_AJ_G0035654.1 mouse_genomes_project X 33990052 33991524 + MGP_AJ_P0096037 6030498E09Rik protein_coding protein_coding MGP_AJ_T0100328.1 MGP_AJ_G0038294.1 mouse_genomes_project X 17397061 17397164 + Gm25812 snRNA snRNA MGP_AJ_T0016565.1 MGP_AJ_G0014660.1 mouse_genomes_project X 96284418 96285611 + processed_pseudogene processed_pseudogene MGP_AJ_T0016842.1 MGP_AJ_G0014937.1 mouse_genomes_project X 152320586 152322241 + processed_pseudogene processed_pseudogene MGP_AJ_T0011177.1 MGP_AJ_G0009299.1 mouse_genomes_project X 68487025 68487105 - Mir105 miRNA miRNA MGP_AJ_T0016589.1 MGP_AJ_G0014684.1 mouse_genomes_project X 99680416 99681174 - processed_pseudogene processed_pseudogene MGP_AJ_T0096379.1 MGP_AJ_G0035765.1 mouse_genomes_project X 67242108 67268697 + MGP_AJ_P0096379 Mtmr1 protein_coding protein_coding MGP_AJ_T0096380.1 MGP_AJ_G0035765.1 mouse_genomes_project X 67242108 67300660 + MGP_AJ_P0096380 Mtmr1 protein_coding protein_coding MGP_AJ_T0096381.1 MGP_AJ_G0035765.1 mouse_genomes_project X 67242285 67274524 + MGP_AJ_P0096381 Mtmr1 protein_coding protein_coding MGP_AJ_T0096382.1 MGP_AJ_G0035765.1 mouse_genomes_project X 67247375 67268675 + MGP_AJ_P0096382 Mtmr1 protein_coding protein_coding MGP_AJ_T0096383.1 MGP_AJ_G0035765.1 mouse_genomes_project X 67247375 67268675 + MGP_AJ_P0096383 Mtmr1 protein_coding protein_coding MGP_AJ_T0096384.1 MGP_AJ_G0035765.1 mouse_genomes_project X 67247375 67268675 + MGP_AJ_P0096384 Mtmr1 protein_coding protein_coding MGP_AJ_T0096385.1 MGP_AJ_G0035765.1 mouse_genomes_project X 67271117 67272758 + Mtmr1 protein_coding retained_intron MGP_AJ_T0096386.1 MGP_AJ_G0035765.1 mouse_genomes_project X 67271618 67273154 + Mtmr1 protein_coding retained_intron MGP_AJ_T0096387.1 MGP_AJ_G0035765.1 mouse_genomes_project X 67274217 67300127 + Mtmr1 protein_coding retained_intron MGP_AJ_T0011122.1 MGP_AJ_G0009244.1 mouse_genomes_project X 15804576 15804654 - Gm24824 miRNA miRNA MGP_AJ_T0016728.1 MGP_AJ_G0014823.1 mouse_genomes_project X 131296279 131296637 + processed_pseudogene processed_pseudogene MGP_AJ_T0096914.1 MGP_AJ_G0035890.1 mouse_genomes_project X 90124840 90218393 + MGP_AJ_P0096914 Pcyt1b protein_coding protein_coding MGP_AJ_T0096915.1 MGP_AJ_G0035890.1 mouse_genomes_project X 90146424 90218393 + MGP_AJ_P0096915 Pcyt1b protein_coding protein_coding MGP_AJ_T0096916.1 MGP_AJ_G0035890.1 mouse_genomes_project X 90200016 90203310 + Pcyt1b protein_coding processed_transcript MGP_AJ_T0016632.1 MGP_AJ_G0014727.1 mouse_genomes_project X 104718766 104723593 + processed_pseudogene processed_pseudogene MGP_AJ_T0098783.1 MGP_AJ_G0036767.1 mouse_genomes_project X 161394561 161394682 + n-R5s18 rRNA rRNA MGP_AJ_T0096861.1 MGP_AJ_G0035870.1 mouse_genomes_project X 79058061 79614725 + protein_coding retained_intron MGP_AJ_T0096862.1 MGP_AJ_G0035870.1 mouse_genomes_project X 79058094 81362737 + MGP_AJ_P0096862 protein_coding protein_coding MGP_AJ_T0096863.1 MGP_AJ_G0035870.1 mouse_genomes_project X 79149154 79855632 + protein_coding retained_intron MGP_AJ_T0096865.1 MGP_AJ_G0035870.1 mouse_genomes_project X 79982111 80014064 + protein_coding processed_transcript MGP_AJ_T0096866.1 MGP_AJ_G0035870.1 mouse_genomes_project X 80050281 80051283 + protein_coding processed_transcript MGP_AJ_T0096867.1 MGP_AJ_G0035870.1 mouse_genomes_project X 80200856 80432895 + protein_coding processed_transcript MGP_AJ_T0096868.1 MGP_AJ_G0035870.1 mouse_genomes_project X 80722210 81298254 + protein_coding retained_intron MGP_AJ_T0096869.1 MGP_AJ_G0035870.1 mouse_genomes_project X 80904343 81116958 + protein_coding retained_intron MGP_AJ_T0096870.1 MGP_AJ_G0035870.1 mouse_genomes_project X 81196950 81205038 + protein_coding retained_intron MGP_AJ_T0096871.1 MGP_AJ_G0035870.1 mouse_genomes_project X 81196974 81294201 + protein_coding retained_intron MGP_AJ_T0096872.1 MGP_AJ_G0035870.1 mouse_genomes_project X 81196977 81298252 + protein_coding retained_intron MGP_AJ_T0096873.1 MGP_AJ_G0035870.1 mouse_genomes_project X 81197000 81358998 + MGP_AJ_P0096873 protein_coding unknown_likely_coding MGP_AJ_T0096874.1 MGP_AJ_G0035870.1 mouse_genomes_project X 81197068 81361555 + MGP_AJ_P0096874 protein_coding protein_coding MGP_AJ_T0096875.1 MGP_AJ_G0035870.1 mouse_genomes_project X 81197068 81359014 + MGP_AJ_P0096875 protein_coding protein_coding MGP_AJ_T0096876.1 MGP_AJ_G0035870.1 mouse_genomes_project X 81333245 81359353 + protein_coding processed_transcript MGP_AJ_T0097157.1 MGP_AJ_G0035947.1 mouse_genomes_project X 97960214 97964668 + MGP_AJ_P0097157 Itgb1bp2 protein_coding protein_coding MGP_AJ_T0097158.1 MGP_AJ_G0035947.1 mouse_genomes_project X 97963237 97964271 + Itgb1bp2 protein_coding retained_intron MGP_AJ_T0095976.1 MGP_AJ_G0035623.1 mouse_genomes_project X 32547441 32548629 + MGP_AJ_P0095976 protein_coding protein_coding MGP_AJ_T0095981.1 MGP_AJ_G0035623.1 mouse_genomes_project X 32547787 32579522 + protein_coding retained_intron MGP_AJ_T0100377.1 MGP_AJ_G0038343.1 mouse_genomes_project X 135142583 135142690 - Gm22057 snRNA snRNA MGP_AJ_T0016206.1 MGP_AJ_G0014301.1 mouse_genomes_project X 3355865 3356225 + processed_pseudogene processed_pseudogene MGP_AJ_T0096984.1 MGP_AJ_G0035908.1 mouse_genomes_project X 92484196 92505124 - MGP_AJ_P0096984 protein_coding protein_coding MGP_AJ_T0096985.1 MGP_AJ_G0035908.1 mouse_genomes_project X 92484196 92505124 - MGP_AJ_P0096985 protein_coding protein_coding MGP_AJ_T0096986.1 MGP_AJ_G0035908.1 mouse_genomes_project X 92489540 92505097 - protein_coding retained_intron MGP_AJ_T0096987.1 MGP_AJ_G0035908.1 mouse_genomes_project X 92494699 92496471 - protein_coding processed_transcript MGP_AJ_T0096988.1 MGP_AJ_G0035908.1 mouse_genomes_project X 92495204 92499326 - protein_coding processed_transcript MGP_AJ_T0096989.1 MGP_AJ_G0035908.1 mouse_genomes_project X 92497702 92505173 - protein_coding retained_intron MGP_AJ_T0016234.1 MGP_AJ_G0014329.1 mouse_genomes_project X 8886315 8889142 - processed_pseudogene processed_pseudogene MGP_AJ_T0016488.1 MGP_AJ_G0014583.1 mouse_genomes_project X 82228635 82229149 - processed_pseudogene processed_pseudogene MGP_AJ_T0095933.1 MGP_AJ_G0035600.1 mouse_genomes_project X 31730122 31763657 + MGP_AJ_P0095933 Slc25a43 protein_coding protein_coding MGP_AJ_T0095934.1 MGP_AJ_G0035600.1 mouse_genomes_project X 31730174 31762740 + Slc25a43 protein_coding processed_transcript MGP_AJ_T0016299.1 MGP_AJ_G0014394.1 mouse_genomes_project X 36949847 36950420 - processed_pseudogene processed_pseudogene MGP_AJ_T0096022.1 MGP_AJ_G0035650.1 mouse_genomes_project X 33421159 33484773 - MGP_AJ_P0096022 Lamp2 protein_coding protein_coding MGP_AJ_T0096023.1 MGP_AJ_G0035650.1 mouse_genomes_project X 33424864 33484773 - MGP_AJ_P0096023 Lamp2 protein_coding protein_coding MGP_AJ_T0096024.1 MGP_AJ_G0035650.1 mouse_genomes_project X 33439455 33484773 - MGP_AJ_P0096024 Lamp2 protein_coding protein_coding MGP_AJ_T0096025.1 MGP_AJ_G0035650.1 mouse_genomes_project X 33450219 33471428 - Lamp2 protein_coding retained_intron MGP_AJ_T0096026.1 MGP_AJ_G0035650.1 mouse_genomes_project X 33481209 33484733 - Lamp2 protein_coding processed_transcript MGP_AJ_T0018611.1 MGP_AJ_G0015752.1 mouse_genomes_project X 15945223 15972272 + A230072C01Rik processed_transcript processed_transcript MGP_AJ_T0018612.1 MGP_AJ_G0015752.1 mouse_genomes_project X 15945653 15972286 + A230072C01Rik processed_transcript processed_transcript MGP_AJ_T0095807.1 MGP_AJ_G0035559.1 mouse_genomes_project X 12110835 12306715 - MGP_AJ_P0095807 Efhc2 protein_coding protein_coding MGP_AJ_T0095560.1 MGP_AJ_G0035495.1 mouse_genomes_project X 2243379 2246395 - MGP_AJ_P0095560 Plp2 protein_coding protein_coding MGP_AJ_T0095561.1 MGP_AJ_G0035495.1 mouse_genomes_project X 2244445 2246318 - Plp2 protein_coding retained_intron MGP_AJ_T0095617.1 MGP_AJ_G0035504.1 mouse_genomes_project X 2422740 2423385 + Otud5 protein_coding processed_transcript MGP_AJ_T0095618.1 MGP_AJ_G0035504.1 mouse_genomes_project X 2423207 2459965 + MGP_AJ_P0095618 Otud5 protein_coding protein_coding MGP_AJ_T0095619.1 MGP_AJ_G0035504.1 mouse_genomes_project X 2423232 2458199 + MGP_AJ_P0095619 Otud5 protein_coding protein_coding MGP_AJ_T0095620.1 MGP_AJ_G0035504.1 mouse_genomes_project X 2423432 2458624 + MGP_AJ_P0095620 Otud5 protein_coding protein_coding MGP_AJ_T0095621.1 MGP_AJ_G0035504.1 mouse_genomes_project X 2423458 2458629 + MGP_AJ_P0095621 Otud5 protein_coding protein_coding MGP_AJ_T0095622.1 MGP_AJ_G0035504.1 mouse_genomes_project X 2423492 2459959 + MGP_AJ_P0095622 Otud5 protein_coding protein_coding MGP_AJ_T0095623.1 MGP_AJ_G0035504.1 mouse_genomes_project X 2423981 2458623 + Otud5 protein_coding retained_intron MGP_AJ_T0095624.1 MGP_AJ_G0035504.1 mouse_genomes_project X 2423982 2451304 + Otud5 protein_coding retained_intron MGP_AJ_T0095625.1 MGP_AJ_G0035504.1 mouse_genomes_project X 2438696 2450904 + Otud5 protein_coding retained_intron MGP_AJ_T0096900.1 MGP_AJ_G0035882.1 mouse_genomes_project X 86251405 86254122 - MGP_AJ_P0096900 4930415L06Rik protein_coding protein_coding MGP_AJ_T0016577.1 MGP_AJ_G0014672.1 mouse_genomes_project X 98320338 98321218 - processed_pseudogene processed_pseudogene MGP_AJ_T0011149.1 MGP_AJ_G0009271.1 mouse_genomes_project X 54663458 54663537 - Mir504 miRNA miRNA MGP_AJ_T0016368.1 MGP_AJ_G0014463.1 mouse_genomes_project X 56498203 56498659 - processed_pseudogene processed_pseudogene MGP_AJ_T0016407.1 MGP_AJ_G0014502.1 mouse_genomes_project X 64503689 64503914 - processed_pseudogene processed_pseudogene MGP_AJ_T0005577.1 MGP_AJ_G0004700.1 mouse_genomes_project X 44343765 44441711 - Gm14697 antisense antisense MGP_AJ_T0016787.1 MGP_AJ_G0014882.1 mouse_genomes_project X 140086632 140087662 - processed_pseudogene processed_pseudogene MGP_AJ_T0016692.1 MGP_AJ_G0014787.1 mouse_genomes_project X 116934745 116935397 - processed_pseudogene processed_pseudogene MGP_AJ_T0016524.1 MGP_AJ_G0014619.1 mouse_genomes_project X 89997877 90000614 + processed_pseudogene processed_pseudogene MGP_AJ_T0100342.1 MGP_AJ_G0038308.1 mouse_genomes_project X 53542050 53542157 + Gm25023 snRNA snRNA MGP_AJ_T0100372.1 MGP_AJ_G0038338.1 mouse_genomes_project X 112897250 112897414 + Gm24624 snRNA snRNA MGP_AJ_T0009391.1 MGP_AJ_G0007537.1 mouse_genomes_project X 58134155 58139684 - 1700019B21Rik lincRNA lincRNA MGP_AJ_T0009392.1 MGP_AJ_G0007537.1 mouse_genomes_project X 58134155 58153239 - 1700019B21Rik lincRNA lincRNA MGP_AJ_T0097331.1 MGP_AJ_G0036001.1 mouse_genomes_project X 105799588 105868398 + MGP_AJ_P0097331 Sh3bgrl protein_coding protein_coding MGP_AJ_T0097332.1 MGP_AJ_G0036001.1 mouse_genomes_project X 105799732 105904160 + Sh3bgrl protein_coding processed_transcript MGP_AJ_T0097333.1 MGP_AJ_G0036001.1 mouse_genomes_project X 105818780 105860220 + Sh3bgrl protein_coding processed_transcript MGP_AJ_T0096877.1 MGP_AJ_G0035872.1 mouse_genomes_project X 81407927 81429835 + MGP_AJ_P0096877 Fthl17a protein_coding protein_coding MGP_AJ_T0005591.1 MGP_AJ_G0004712.1 mouse_genomes_project X 71649890 71651707 + Gm15063 antisense antisense MGP_AJ_T0096292.1 MGP_AJ_G0035734.1 mouse_genomes_project X 53579560 53589198 + MGP_AJ_P0096292 Zic3 protein_coding protein_coding MGP_AJ_T0096293.1 MGP_AJ_G0035734.1 mouse_genomes_project X 53588392 53594472 + MGP_AJ_P0096293 Zic3 protein_coding protein_coding MGP_AJ_T0096294.1 MGP_AJ_G0035734.1 mouse_genomes_project X 53588748 53594472 + MGP_AJ_P0096294 Zic3 protein_coding protein_coding MGP_AJ_T0096295.1 MGP_AJ_G0035734.1 mouse_genomes_project X 53588759 53599863 + MGP_AJ_P0096295 Zic3 protein_coding protein_coding MGP_AJ_T0016894.1 MGP_AJ_G0014989.1 mouse_genomes_project X 161726111 161730056 + processed_pseudogene processed_pseudogene MGP_AJ_T0097235.1 MGP_AJ_G0035977.1 mouse_genomes_project X 102312575 102323356 + MGP_AJ_P0097235 Fgf16 protein_coding protein_coding MGP_AJ_T0098041.1 MGP_AJ_G0036200.1 mouse_genomes_project X 157580306 157654514 + Adgrg2 protein_coding retained_intron MGP_AJ_T0098042.1 MGP_AJ_G0036200.1 mouse_genomes_project X 157580306 157664428 + MGP_AJ_P0098042 Adgrg2 protein_coding protein_coding MGP_AJ_T0098043.1 MGP_AJ_G0036200.1 mouse_genomes_project X 157609512 157692003 + MGP_AJ_P0098043 Adgrg2 protein_coding protein_coding MGP_AJ_T0098044.1 MGP_AJ_G0036200.1 mouse_genomes_project X 157619010 157692252 + MGP_AJ_P0098044 Adgrg2 protein_coding protein_coding MGP_AJ_T0018607.1 MGP_AJ_G0015750.1 mouse_genomes_project X 7979663 7982858 + 5730405O15Rik processed_transcript processed_transcript MGP_AJ_T0018608.1 MGP_AJ_G0015750.1 mouse_genomes_project X 7979699 7982945 + 5730405O15Rik processed_transcript processed_transcript MGP_AJ_T0096211.1 MGP_AJ_G0035703.1 mouse_genomes_project X 48162289 48335254 - MGP_AJ_P0096211 Plac1 protein_coding protein_coding MGP_AJ_T0096212.1 MGP_AJ_G0035703.1 mouse_genomes_project X 48162290 48206559 - MGP_AJ_P0096212 Plac1 protein_coding protein_coding MGP_AJ_T0096213.1 MGP_AJ_G0035703.1 mouse_genomes_project X 48162466 48302364 - MGP_AJ_P0096213 Plac1 protein_coding protein_coding MGP_AJ_T0016499.1 MGP_AJ_G0014594.1 mouse_genomes_project X 85040124 85042635 + processed_pseudogene processed_pseudogene MGP_AJ_T0016431.1 MGP_AJ_G0014526.1 mouse_genomes_project X 70514135 70514720 + processed_pseudogene processed_pseudogene MGP_AJ_T0016539.1 MGP_AJ_G0014634.1 mouse_genomes_project X 91116410 91116736 + processed_pseudogene processed_pseudogene MGP_AJ_T0016480.1 MGP_AJ_G0014575.1 mouse_genomes_project X 81394188 81394391 - processed_pseudogene processed_pseudogene MGP_AJ_T0016490.1 MGP_AJ_G0014585.1 mouse_genomes_project X 83009685 83009995 + processed_pseudogene processed_pseudogene MGP_AJ_T0016670.1 MGP_AJ_G0014765.1 mouse_genomes_project X 112205773 112206163 + processed_pseudogene processed_pseudogene MGP_AJ_T0097059.1 MGP_AJ_G0035927.1 mouse_genomes_project X 97020307 97041456 + Dgat2l6 protein_coding retained_intron MGP_AJ_T0097060.1 MGP_AJ_G0035927.1 mouse_genomes_project X 97020310 97041709 + MGP_AJ_P0097060 Dgat2l6 protein_coding protein_coding MGP_AJ_T0016457.1 MGP_AJ_G0014552.1 mouse_genomes_project X 74554075 74557529 + processed_pseudogene processed_pseudogene MGP_AJ_T0016576.1 MGP_AJ_G0014671.1 mouse_genomes_project X 98320337 98321218 - processed_pseudogene processed_pseudogene MGP_AJ_T0009396.1 MGP_AJ_G0007541.1 mouse_genomes_project X 71997908 72012300 - Gm14715 lincRNA lincRNA MGP_AJ_T0101648.1 MGP_AJ_G0039614.1 mouse_genomes_project X 133992442 133992561 + Gm23679 snoRNA snoRNA MGP_AJ_T0097947.1 MGP_AJ_G0036176.1 mouse_genomes_project X 150848325 150849611 + MGP_AJ_P0097947 Spin2c protein_coding protein_coding MGP_AJ_T0097948.1 MGP_AJ_G0036176.1 mouse_genomes_project X 150848341 150849624 + MGP_AJ_P0097948 Spin2c protein_coding protein_coding MGP_AJ_T0097949.1 MGP_AJ_G0036176.1 mouse_genomes_project X 150848393 150850344 + MGP_AJ_P0097949 Spin2c protein_coding protein_coding MGP_AJ_T0096764.1 MGP_AJ_G0035840.1 mouse_genomes_project X 71132689 71147361 + MGP_AJ_P0096764 Dkc1 protein_coding protein_coding MGP_AJ_T0096765.1 MGP_AJ_G0035840.1 mouse_genomes_project X 71132888 71139380 + MGP_AJ_P0096765 Dkc1 protein_coding protein_coding MGP_AJ_T0096766.1 MGP_AJ_G0035840.1 mouse_genomes_project X 71132921 71135723 + MGP_AJ_P0096766 Dkc1 protein_coding protein_coding MGP_AJ_T0096767.1 MGP_AJ_G0035840.1 mouse_genomes_project X 71132934 71135633 + Dkc1 protein_coding retained_intron MGP_AJ_T0096768.1 MGP_AJ_G0035840.1 mouse_genomes_project X 71132936 71135783 + Dkc1 protein_coding processed_transcript MGP_AJ_T0096769.1 MGP_AJ_G0035840.1 mouse_genomes_project X 71132947 71145505 + MGP_AJ_P0096769 Dkc1 protein_coding unknown_likely_coding MGP_AJ_T0096770.1 MGP_AJ_G0035840.1 mouse_genomes_project X 71132950 71139302 + MGP_AJ_P0096770 Dkc1 protein_coding nonsense_mediated_decay MGP_AJ_T0096771.1 MGP_AJ_G0035840.1 mouse_genomes_project X 71133381 71135655 + Dkc1 protein_coding retained_intron MGP_AJ_T0096772.1 MGP_AJ_G0035840.1 mouse_genomes_project X 71136753 71143955 + Dkc1 protein_coding retained_intron MGP_AJ_T0096773.1 MGP_AJ_G0035840.1 mouse_genomes_project X 71136888 71144987 + MGP_AJ_P0096773 Dkc1 protein_coding nonsense_mediated_decay MGP_AJ_T0096774.1 MGP_AJ_G0035840.1 mouse_genomes_project X 71137094 71142462 + Dkc1 protein_coding processed_transcript MGP_AJ_T0096775.1 MGP_AJ_G0035840.1 mouse_genomes_project X 71137780 71142510 + Dkc1 protein_coding processed_transcript MGP_AJ_T0096776.1 MGP_AJ_G0035840.1 mouse_genomes_project X 71142692 71145020 + Dkc1 protein_coding retained_intron MGP_AJ_T0016231.1 MGP_AJ_G0014326.1 mouse_genomes_project X 8243592 8245730 + processed_pseudogene processed_pseudogene MGP_AJ_T0016201.1 MGP_AJ_G0014296.1 mouse_genomes_project X 2535330 2536043 - processed_pseudogene processed_pseudogene MGP_AJ_T0016569.1 MGP_AJ_G0014664.1 mouse_genomes_project X 97087161 97087561 + processed_pseudogene processed_pseudogene MGP_AJ_T0016615.1 MGP_AJ_G0014710.1 mouse_genomes_project X 102138122 102138360 - processed_pseudogene processed_pseudogene MGP_AJ_T0016869.1 MGP_AJ_G0014964.1 mouse_genomes_project X 156767077 156767353 - processed_pseudogene processed_pseudogene MGP_AJ_T0098202.1 MGP_AJ_G0036241.1 mouse_genomes_project X 164656489 164692905 - MGP_AJ_P0098202 Prps2 protein_coding protein_coding MGP_AJ_T0098203.1 MGP_AJ_G0036241.1 mouse_genomes_project X 164682551 164692866 - Prps2 protein_coding processed_transcript MGP_AJ_T0016853.1 MGP_AJ_G0014948.1 mouse_genomes_project X 154634379 154635290 + processed_pseudogene processed_pseudogene MGP_AJ_T0016259.1 MGP_AJ_G0014354.1 mouse_genomes_project X 15508239 15509566 + processed_pseudogene processed_pseudogene MGP_AJ_T0016699.1 MGP_AJ_G0014794.1 mouse_genomes_project X 118930633 118930936 + processed_pseudogene processed_pseudogene MGP_AJ_T0009435.1 MGP_AJ_G0007567.1 mouse_genomes_project X 147771699 147772240 - Gm27191 lincRNA lincRNA MGP_AJ_T0096322.1 MGP_AJ_G0035745.1 mouse_genomes_project X 58088118 58088940 + MGP_AJ_P0096322 4931400O07Rik protein_coding protein_coding MGP_AJ_T0101610.1 MGP_AJ_G0039576.1 mouse_genomes_project X 37710888 37711018 - Gm23705 snoRNA snoRNA MGP_AJ_T0016850.1 MGP_AJ_G0014945.1 mouse_genomes_project X 153948841 153949124 + processed_pseudogene processed_pseudogene MGP_AJ_T0009455.1 MGP_AJ_G0007579.1 mouse_genomes_project X 166776847 166804063 + Gm15245 lincRNA lincRNA MGP_AJ_T0005595.1 MGP_AJ_G0004716.1 mouse_genomes_project X 92031757 92120022 + antisense antisense MGP_AJ_T0100332.1 MGP_AJ_G0038298.1 mouse_genomes_project X 32061139 32061248 - Gm26099 snRNA snRNA MGP_AJ_T0096759.1 MGP_AJ_G0035838.1 mouse_genomes_project X 70933016 70947428 + MGP_AJ_P0096759 protein_coding protein_coding MGP_AJ_T0097713.1 MGP_AJ_G0036129.1 mouse_genomes_project X 139768445 139874872 - MGP_AJ_P0097713 Ammecr1 protein_coding protein_coding MGP_AJ_T0016439.1 MGP_AJ_G0014534.1 mouse_genomes_project X 71527152 71527800 + processed_pseudogene processed_pseudogene MGP_AJ_T0096326.1 MGP_AJ_G0035748.1 mouse_genomes_project X 59961210 59973320 - MGP_AJ_P0096326 Slitrk4 protein_coding protein_coding MGP_AJ_T0096327.1 MGP_AJ_G0035748.1 mouse_genomes_project X 59966094 59973303 - MGP_AJ_P0096327 Slitrk4 protein_coding protein_coding MGP_AJ_T0096328.1 MGP_AJ_G0035748.1 mouse_genomes_project X 59969045 59972146 - MGP_AJ_P0096328 Slitrk4 protein_coding protein_coding MGP_AJ_T0016474.1 MGP_AJ_G0014569.1 mouse_genomes_project X 78507353 78507639 - processed_pseudogene processed_pseudogene MGP_AJ_T0011134.1 MGP_AJ_G0009256.1 mouse_genomes_project X 47488600 47488709 - Mir717 miRNA miRNA MGP_AJ_T0011199.1 MGP_AJ_G0009321.1 mouse_genomes_project X 102994933 102995043 + Mir6382 miRNA miRNA MGP_AJ_T0095954.1 MGP_AJ_G0035608.1 mouse_genomes_project X 32093230 32113582 - MGP_AJ_P0095954 Upf3b protein_coding protein_coding MGP_AJ_T0095955.1 MGP_AJ_G0035608.1 mouse_genomes_project X 32094064 32113491 - MGP_AJ_P0095955 Upf3b protein_coding unknown_likely_coding MGP_AJ_T0095956.1 MGP_AJ_G0035608.1 mouse_genomes_project X 32098921 32107852 - MGP_AJ_P0095956 Upf3b protein_coding protein_coding MGP_AJ_T0095957.1 MGP_AJ_G0035608.1 mouse_genomes_project X 32100695 32113582 - Upf3b protein_coding processed_transcript MGP_AJ_T0016401.1 MGP_AJ_G0014496.1 mouse_genomes_project X 64045223 64045589 - processed_pseudogene processed_pseudogene MGP_AJ_T0016593.1 MGP_AJ_G0014688.1 mouse_genomes_project X 99865796 99866801 + processed_pseudogene processed_pseudogene MGP_AJ_T0011216.1 MGP_AJ_G0009338.1 mouse_genomes_project X 143893227 143893313 + Mir1264 miRNA miRNA MGP_AJ_T0011156.1 MGP_AJ_G0009278.1 mouse_genomes_project X 62530739 62530815 - Mir883a miRNA miRNA MGP_AJ_T0097550.1 MGP_AJ_G0036072.1 mouse_genomes_project X 132793876 132794805 + MGP_AJ_P0097550 protein_coding protein_coding MGP_AJ_T0097729.1 MGP_AJ_G0036133.1 mouse_genomes_project X 140692072 140717956 - MGP_AJ_P0097729 Capn6 protein_coding protein_coding MGP_AJ_T0097730.1 MGP_AJ_G0036133.1 mouse_genomes_project X 140706579 140717874 - Capn6 protein_coding retained_intron MGP_AJ_T0096202.1 MGP_AJ_G0035698.1 mouse_genomes_project X 47106297 47230274 - MGP_AJ_P0096202 Gpc4 protein_coding protein_coding MGP_AJ_T0096437.1 MGP_AJ_G0035784.1 mouse_genomes_project X 69154073 69156578 + MGP_AJ_P0096437 F8a protein_coding protein_coding MGP_AJ_T0009403.1 MGP_AJ_G0007547.1 mouse_genomes_project X 91302916 91308247 + Gm26617 lincRNA lincRNA MGP_AJ_T0016189.1 MGP_AJ_G0014284.1 mouse_genomes_project X 296414 299849 - processed_pseudogene processed_pseudogene MGP_AJ_T0016501.1 MGP_AJ_G0014596.1 mouse_genomes_project X 85064084 85065206 - processed_pseudogene processed_pseudogene MGP_AJ_T0098067.1 MGP_AJ_G0036206.1 mouse_genomes_project X 158314373 158459866 + MGP_AJ_P0098067 Scml2 protein_coding protein_coding MGP_AJ_T0098068.1 MGP_AJ_G0036206.1 mouse_genomes_project X 158340498 158459852 + MGP_AJ_P0098068 Scml2 protein_coding protein_coding MGP_AJ_T0098069.1 MGP_AJ_G0036206.1 mouse_genomes_project X 158368482 158459918 + MGP_AJ_P0098069 Scml2 protein_coding protein_coding MGP_AJ_T0098070.1 MGP_AJ_G0036206.1 mouse_genomes_project X 158368504 158461162 + MGP_AJ_P0098070 Scml2 protein_coding protein_coding MGP_AJ_T0098071.1 MGP_AJ_G0036206.1 mouse_genomes_project X 158368504 158461179 + MGP_AJ_P0098071 Scml2 protein_coding protein_coding MGP_AJ_T0098072.1 MGP_AJ_G0036206.1 mouse_genomes_project X 158368792 158457795 + MGP_AJ_P0098072 Scml2 protein_coding protein_coding MGP_AJ_T0098073.1 MGP_AJ_G0036206.1 mouse_genomes_project X 158435113 158440381 + Scml2 protein_coding processed_transcript MGP_AJ_T0016290.1 MGP_AJ_G0014385.1 mouse_genomes_project X 35036794 35038246 - processed_pseudogene processed_pseudogene MGP_AJ_T0016258.1 MGP_AJ_G0014353.1 mouse_genomes_project X 15436428 15436624 - processed_pseudogene processed_pseudogene MGP_AJ_T0096193.1 MGP_AJ_G0035695.1 mouse_genomes_project X 46421611 46719210 - MGP_AJ_P0096193 Hs6st2 protein_coding protein_coding MGP_AJ_T0096194.1 MGP_AJ_G0035695.1 mouse_genomes_project X 46421611 46719363 - MGP_AJ_P0096194 Hs6st2 protein_coding protein_coding MGP_AJ_T0096195.1 MGP_AJ_G0035695.1 mouse_genomes_project X 46714289 46718855 - Hs6st2 protein_coding retained_intron MGP_AJ_T0096196.1 MGP_AJ_G0035695.1 mouse_genomes_project X 46717498 46718072 - Hs6st2 protein_coding processed_transcript MGP_AJ_T0096197.1 MGP_AJ_G0035695.1 mouse_genomes_project X 46717684 46718593 - Hs6st2 protein_coding processed_transcript MGP_AJ_T0016382.1 MGP_AJ_G0014477.1 mouse_genomes_project X 58289932 58292208 + processed_pseudogene processed_pseudogene MGP_AJ_T0096794.1 MGP_AJ_G0035844.1 mouse_genomes_project X 71446854 71461343 + MGP_AJ_P0096794 Fundc2 protein_coding protein_coding MGP_AJ_T0096795.1 MGP_AJ_G0035844.1 mouse_genomes_project X 71446874 71452046 + Fundc2 protein_coding retained_intron MGP_AJ_T0096796.1 MGP_AJ_G0035844.1 mouse_genomes_project X 71451672 71459212 + Fundc2 protein_coding processed_transcript MGP_AJ_T0016306.1 MGP_AJ_G0014401.1 mouse_genomes_project X 38733642 38734360 + processed_pseudogene processed_pseudogene MGP_AJ_T0016476.1 MGP_AJ_G0014571.1 mouse_genomes_project X 78787016 78787818 - processed_pseudogene processed_pseudogene MGP_AJ_T0096960.1 MGP_AJ_G0035902.1 mouse_genomes_project X 91600931 91726580 - MGP_AJ_P0096960 Arhgef9 protein_coding protein_coding MGP_AJ_T0096961.1 MGP_AJ_G0035902.1 mouse_genomes_project X 91601044 91757271 - MGP_AJ_P0096961 Arhgef9 protein_coding protein_coding MGP_AJ_T0096962.1 MGP_AJ_G0035902.1 mouse_genomes_project X 91601047 91727367 - MGP_AJ_P0096962 Arhgef9 protein_coding protein_coding MGP_AJ_T0096963.1 MGP_AJ_G0035902.1 mouse_genomes_project X 91601053 91727469 - MGP_AJ_P0096963 Arhgef9 protein_coding protein_coding MGP_AJ_T0096964.1 MGP_AJ_G0035902.1 mouse_genomes_project X 91602286 91757274 - MGP_AJ_P0096964 Arhgef9 protein_coding protein_coding MGP_AJ_T0096965.1 MGP_AJ_G0035902.1 mouse_genomes_project X 91602375 91757602 - MGP_AJ_P0096965 Arhgef9 protein_coding protein_coding MGP_AJ_T0096966.1 MGP_AJ_G0035902.1 mouse_genomes_project X 91603633 91757590 - MGP_AJ_P0096966 Arhgef9 protein_coding protein_coding MGP_AJ_T0096967.1 MGP_AJ_G0035902.1 mouse_genomes_project X 91603664 91757625 - MGP_AJ_P0096967 Arhgef9 protein_coding protein_coding MGP_AJ_T0096968.1 MGP_AJ_G0035902.1 mouse_genomes_project X 91603713 91638231 - MGP_AJ_P0096968 Arhgef9 protein_coding protein_coding MGP_AJ_T0096969.1 MGP_AJ_G0035902.1 mouse_genomes_project X 91604028 91607084 - MGP_AJ_P0096969 Arhgef9 protein_coding protein_coding MGP_AJ_T0096970.1 MGP_AJ_G0035902.1 mouse_genomes_project X 91604029 91612004 - MGP_AJ_P0096970 Arhgef9 protein_coding protein_coding MGP_AJ_T0096971.1 MGP_AJ_G0035902.1 mouse_genomes_project X 91630375 91726808 - MGP_AJ_P0096971 Arhgef9 protein_coding protein_coding MGP_AJ_T0096972.1 MGP_AJ_G0035902.1 mouse_genomes_project X 91638151 91757221 - MGP_AJ_P0096972 Arhgef9 protein_coding protein_coding MGP_AJ_T0096973.1 MGP_AJ_G0035902.1 mouse_genomes_project X 91658899 91727522 - MGP_AJ_P0096973 Arhgef9 protein_coding protein_coding MGP_AJ_T0096974.1 MGP_AJ_G0035902.1 mouse_genomes_project X 91670434 91727421 - MGP_AJ_P0096974 Arhgef9 protein_coding protein_coding MGP_AJ_T0016805.1 MGP_AJ_G0014900.1 mouse_genomes_project X 142854767 142855602 + processed_pseudogene processed_pseudogene MGP_AJ_T0011766.1 MGP_AJ_G0009888.1 mouse_genomes_project X 100185236 100185307 + Gm27798 misc_RNA misc_RNA MGP_AJ_T0097215.1 MGP_AJ_G0035966.1 mouse_genomes_project X 100004242 100061466 + MGP_AJ_P0097215 Gm26992 protein_coding protein_coding MGP_AJ_T0095939.1 MGP_AJ_G0035603.1 mouse_genomes_project X 31862046 31862618 + Ube2a protein_coding processed_transcript MGP_AJ_T0095940.1 MGP_AJ_G0035603.1 mouse_genomes_project X 31862477 31863514 + Ube2a protein_coding retained_intron MGP_AJ_T0095941.1 MGP_AJ_G0035603.1 mouse_genomes_project X 31862477 31874811 + MGP_AJ_P0095941 Ube2a protein_coding protein_coding MGP_AJ_T0095942.1 MGP_AJ_G0035603.1 mouse_genomes_project X 31862487 31875485 + MGP_AJ_P0095942 Ube2a protein_coding protein_coding MGP_AJ_T0095943.1 MGP_AJ_G0035603.1 mouse_genomes_project X 31862632 31875790 + MGP_AJ_P0095943 Ube2a protein_coding protein_coding MGP_AJ_T0095944.1 MGP_AJ_G0035603.1 mouse_genomes_project X 31873037 31874816 + Ube2a protein_coding retained_intron MGP_AJ_T0016712.1 MGP_AJ_G0014807.1 mouse_genomes_project X 127012708 127013384 - processed_pseudogene processed_pseudogene MGP_AJ_T0100357.1 MGP_AJ_G0038323.1 mouse_genomes_project X 97505067 97505130 + Gm24577 snRNA snRNA MGP_AJ_T0098781.1 MGP_AJ_G0036765.1 mouse_genomes_project X 156624610 156624719 + Gm23806 rRNA rRNA MGP_AJ_T0101631.1 MGP_AJ_G0039597.1 mouse_genomes_project X 101200947 101201054 + Gm22430 snoRNA snoRNA MGP_AJ_T0097412.1 MGP_AJ_G0036035.1 mouse_genomes_project X 124177604 124185813 - MGP_AJ_P0097412 Cldn34c4 protein_coding protein_coding MGP_AJ_T0016195.1 MGP_AJ_G0014290.1 mouse_genomes_project X 1705244 1705675 - processed_pseudogene processed_pseudogene MGP_AJ_T0016619.1 MGP_AJ_G0014714.1 mouse_genomes_project X 102875748 102878933 - processed_pseudogene processed_pseudogene MGP_AJ_T0102968.1 MGP_AJ_G0040708.1 mouse_genomes_project X 133266851 133268766 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0095763.1 MGP_AJ_G0035546.1 mouse_genomes_project X 7581281 7600677 - MGP_AJ_P0095763 1810030O07Rik protein_coding protein_coding MGP_AJ_T0016537.1 MGP_AJ_G0014632.1 mouse_genomes_project X 91063388 91063797 + processed_pseudogene processed_pseudogene MGP_AJ_T0016379.1 MGP_AJ_G0014474.1 mouse_genomes_project X 57817176 57817678 + processed_pseudogene processed_pseudogene MGP_AJ_T0002482.1 MGP_AJ_G0002391.1 mouse_genomes_project X 149247928 149249404 - TEC TEC MGP_AJ_T0016352.1 MGP_AJ_G0014447.1 mouse_genomes_project X 53281266 53282340 - processed_pseudogene processed_pseudogene MGP_AJ_T0100322.1 MGP_AJ_G0038288.1 mouse_genomes_project X 10628698 10628805 - Gm25207 snRNA snRNA MGP_AJ_T0016376.1 MGP_AJ_G0014471.1 mouse_genomes_project X 57454905 57455795 + processed_pseudogene processed_pseudogene MGP_AJ_T0097014.1 MGP_AJ_G0035916.1 mouse_genomes_project X 94631609 94809631 + MGP_AJ_P0097014 Ar protein_coding protein_coding MGP_AJ_T0096007.1 MGP_AJ_G0035644.1 mouse_genomes_project X 33109742 33116311 - MGP_AJ_P0096007 Rhox12 protein_coding protein_coding MGP_AJ_T0096008.1 MGP_AJ_G0035644.1 mouse_genomes_project X 33109843 33113809 - MGP_AJ_P0096008 Rhox12 protein_coding protein_coding MGP_AJ_T0096009.1 MGP_AJ_G0035644.1 mouse_genomes_project X 33111242 33116191 - MGP_AJ_P0096009 Rhox12 protein_coding protein_coding MGP_AJ_T0016312.1 MGP_AJ_G0014407.1 mouse_genomes_project X 40509793 40511054 - processed_pseudogene processed_pseudogene MGP_AJ_T0097037.1 MGP_AJ_G0035921.1 mouse_genomes_project X 95948700 95954216 - MGP_AJ_P0097037 Pja1 protein_coding protein_coding MGP_AJ_T0097038.1 MGP_AJ_G0035921.1 mouse_genomes_project X 95948704 95953646 - MGP_AJ_P0097038 Pja1 protein_coding protein_coding MGP_AJ_T0097039.1 MGP_AJ_G0035921.1 mouse_genomes_project X 95948734 95953694 - MGP_AJ_P0097039 Pja1 protein_coding protein_coding MGP_AJ_T0097040.1 MGP_AJ_G0035921.1 mouse_genomes_project X 95949081 95953651 - MGP_AJ_P0097040 Pja1 protein_coding protein_coding MGP_AJ_T0097041.1 MGP_AJ_G0035921.1 mouse_genomes_project X 95949113 95953631 - MGP_AJ_P0097041 Pja1 protein_coding protein_coding MGP_AJ_T0016868.1 MGP_AJ_G0014963.1 mouse_genomes_project X 156585654 156585918 - processed_pseudogene processed_pseudogene MGP_AJ_T0002477.1 MGP_AJ_G0002386.1 mouse_genomes_project X 69366882 69368138 + TEC TEC MGP_AJ_T0096425.1 MGP_AJ_G0035779.1 mouse_genomes_project X 68810597 68813749 - MGP_AJ_P0096425 Cetn2 protein_coding protein_coding MGP_AJ_T0096426.1 MGP_AJ_G0035779.1 mouse_genomes_project X 68811097 68815208 - MGP_AJ_P0096426 Cetn2 protein_coding protein_coding MGP_AJ_T0096427.1 MGP_AJ_G0035779.1 mouse_genomes_project X 68811801 68815176 - MGP_AJ_P0096427 Cetn2 protein_coding protein_coding MGP_AJ_T0009426.1 MGP_AJ_G0007558.1 mouse_genomes_project X 109558444 109586551 - Gm14936 lincRNA lincRNA MGP_AJ_T0100366.1 MGP_AJ_G0038332.1 mouse_genomes_project X 103302416 103302523 - Gm24491 snRNA snRNA MGP_AJ_T0016785.1 MGP_AJ_G0014880.1 mouse_genomes_project X 139440331 139440763 - processed_pseudogene processed_pseudogene MGP_AJ_T0016433.1 MGP_AJ_G0014528.1 mouse_genomes_project X 70567973 70568722 + processed_pseudogene processed_pseudogene MGP_AJ_T0096291.1 MGP_AJ_G0035733.1 mouse_genomes_project X 53026404 53033826 - MGP_AJ_P0096291 Gpr101 protein_coding protein_coding MGP_AJ_T0096882.1 MGP_AJ_G0035874.1 mouse_genomes_project X 81885020 81966212 - MGP_AJ_P0096882 Gk protein_coding protein_coding MGP_AJ_T0096883.1 MGP_AJ_G0035874.1 mouse_genomes_project X 81885020 81966199 - MGP_AJ_P0096883 Gk protein_coding protein_coding MGP_AJ_T0096884.1 MGP_AJ_G0035874.1 mouse_genomes_project X 81885020 81966394 - MGP_AJ_P0096884 Gk protein_coding protein_coding MGP_AJ_T0096885.1 MGP_AJ_G0035874.1 mouse_genomes_project X 81885020 81966228 - MGP_AJ_P0096885 Gk protein_coding protein_coding MGP_AJ_T0096886.1 MGP_AJ_G0035874.1 mouse_genomes_project X 81890156 81895708 - Gk protein_coding processed_transcript MGP_AJ_T0096887.1 MGP_AJ_G0035874.1 mouse_genomes_project X 81895627 81897763 - Gk protein_coding retained_intron MGP_AJ_T0096888.1 MGP_AJ_G0035874.1 mouse_genomes_project X 81895924 81922372 - Gk protein_coding retained_intron MGP_AJ_T0096889.1 MGP_AJ_G0035874.1 mouse_genomes_project X 81944487 81948194 - Gk protein_coding retained_intron MGP_AJ_T0097524.1 MGP_AJ_G0036065.1 mouse_genomes_project X 132375481 132424269 - MGP_AJ_P0097524 Tcp11x2 protein_coding protein_coding MGP_AJ_T0095713.1 MGP_AJ_G0035527.1 mouse_genomes_project X 3579884 3587679 + MGP_AJ_P0095713 protein_coding protein_coding MGP_AJ_T0096333.1 MGP_AJ_G0035752.1 mouse_genomes_project X 63414618 63425245 + MGP_AJ_P0096333 protein_coding protein_coding MGP_AJ_T0009366.1 MGP_AJ_G0007521.1 mouse_genomes_project X 7260051 7275074 - Gm14635 lincRNA lincRNA MGP_AJ_T0009367.1 MGP_AJ_G0007521.1 mouse_genomes_project X 7260906 7265574 - Gm14635 lincRNA lincRNA MGP_AJ_T0016724.1 MGP_AJ_G0014819.1 mouse_genomes_project X 129786215 129787249 + processed_pseudogene processed_pseudogene MGP_AJ_T0097063.1 MGP_AJ_G0035930.1 mouse_genomes_project X 97108657 97121636 + MGP_AJ_P0097063 Arr3 protein_coding protein_coding MGP_AJ_T0097064.1 MGP_AJ_G0035930.1 mouse_genomes_project X 97108683 97116772 + Arr3 protein_coding retained_intron MGP_AJ_T0097065.1 MGP_AJ_G0035930.1 mouse_genomes_project X 97108704 97116212 + Arr3 protein_coding retained_intron MGP_AJ_T0097066.1 MGP_AJ_G0035930.1 mouse_genomes_project X 97108715 97116980 + Arr3 protein_coding retained_intron MGP_AJ_T0097067.1 MGP_AJ_G0035930.1 mouse_genomes_project X 97108722 97121636 + Arr3 protein_coding retained_intron MGP_AJ_T0097068.1 MGP_AJ_G0035930.1 mouse_genomes_project X 97108807 97115082 + MGP_AJ_P0097068 Arr3 protein_coding protein_coding MGP_AJ_T0097069.1 MGP_AJ_G0035930.1 mouse_genomes_project X 97109776 97121530 + MGP_AJ_P0097069 Arr3 protein_coding unknown_likely_coding MGP_AJ_T0097070.1 MGP_AJ_G0035930.1 mouse_genomes_project X 97114976 97117579 + Arr3 protein_coding retained_intron MGP_AJ_T0016498.1 MGP_AJ_G0014593.1 mouse_genomes_project X 84988321 84988579 - processed_pseudogene processed_pseudogene MGP_AJ_T0016646.1 MGP_AJ_G0014741.1 mouse_genomes_project X 108911961 108912233 + processed_pseudogene processed_pseudogene MGP_AJ_T0102948.1 MGP_AJ_G0040688.1 mouse_genomes_project X 72492760 72493720 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0100337.1 MGP_AJ_G0038303.1 mouse_genomes_project X 43313979 43314083 + Gm22528 snRNA snRNA MGP_AJ_T0009407.1 MGP_AJ_G0007551.1 mouse_genomes_project X 95892711 95902052 - Gm14809 lincRNA lincRNA MGP_AJ_T0095712.1 MGP_AJ_G0035526.1 mouse_genomes_project X 3579831 3586079 + MGP_AJ_P0095712 protein_coding protein_coding MGP_AJ_T0016307.1 MGP_AJ_G0014402.1 mouse_genomes_project X 38858112 38858747 + processed_pseudogene processed_pseudogene MGP_AJ_T0096509.1 MGP_AJ_G0035804.1 mouse_genomes_project X 69828838 69845883 - MGP_AJ_P0096509 L1cam protein_coding protein_coding MGP_AJ_T0096510.1 MGP_AJ_G0035804.1 mouse_genomes_project X 69829007 69856876 - MGP_AJ_P0096510 L1cam protein_coding protein_coding MGP_AJ_T0096511.1 MGP_AJ_G0035804.1 mouse_genomes_project X 69829726 69845782 - MGP_AJ_P0096511 L1cam protein_coding protein_coding MGP_AJ_T0096512.1 MGP_AJ_G0035804.1 mouse_genomes_project X 69829953 69831449 - L1cam protein_coding retained_intron MGP_AJ_T0096513.1 MGP_AJ_G0035804.1 mouse_genomes_project X 69830059 69831817 - MGP_AJ_P0096513 L1cam protein_coding protein_coding MGP_AJ_T0096514.1 MGP_AJ_G0035804.1 mouse_genomes_project X 69831479 69832719 - L1cam protein_coding retained_intron MGP_AJ_T0096515.1 MGP_AJ_G0035804.1 mouse_genomes_project X 69831733 69832469 - L1cam protein_coding retained_intron MGP_AJ_T0096516.1 MGP_AJ_G0035804.1 mouse_genomes_project X 69832536 69833688 - L1cam protein_coding retained_intron MGP_AJ_T0096517.1 MGP_AJ_G0035804.1 mouse_genomes_project X 69834127 69835210 - L1cam protein_coding retained_intron MGP_AJ_T0096518.1 MGP_AJ_G0035804.1 mouse_genomes_project X 69834480 69836953 - MGP_AJ_P0096518 L1cam protein_coding protein_coding MGP_AJ_T0096519.1 MGP_AJ_G0035804.1 mouse_genomes_project X 69839542 69856837 - L1cam protein_coding retained_intron MGP_AJ_T0096520.1 MGP_AJ_G0035804.1 mouse_genomes_project X 69841664 69872455 - L1cam protein_coding processed_transcript MGP_AJ_T0096521.1 MGP_AJ_G0035804.1 mouse_genomes_project X 69841741 69846340 - MGP_AJ_P0096521 L1cam protein_coding protein_coding MGP_AJ_T0011194.1 MGP_AJ_G0009316.1 mouse_genomes_project X 100162533 100162582 + Mir374c miRNA miRNA MGP_AJ_T0016384.1 MGP_AJ_G0014479.1 mouse_genomes_project X 58724845 58725758 - processed_pseudogene processed_pseudogene MGP_AJ_T0016528.1 MGP_AJ_G0014623.1 mouse_genomes_project X 90453440 90454841 - processed_pseudogene processed_pseudogene MGP_AJ_T0016821.1 MGP_AJ_G0014916.1 mouse_genomes_project X 148105543 148105903 + processed_pseudogene processed_pseudogene MGP_AJ_T0098191.1 MGP_AJ_G0036239.1 mouse_genomes_project X 164552359 164570460 - MGP_AJ_P0098191 Tlr8 protein_coding protein_coding MGP_AJ_T0098192.1 MGP_AJ_G0036239.1 mouse_genomes_project X 164552395 164569962 - MGP_AJ_P0098192 Tlr8 protein_coding protein_coding MGP_AJ_T0098193.1 MGP_AJ_G0036239.1 mouse_genomes_project X 164554482 164570473 - Tlr8 protein_coding processed_transcript MGP_AJ_T0098194.1 MGP_AJ_G0036239.1 mouse_genomes_project X 164555206 164570503 - MGP_AJ_P0098194 Tlr8 protein_coding protein_coding MGP_AJ_T0098195.1 MGP_AJ_G0036239.1 mouse_genomes_project X 164565526 164570458 - Tlr8 protein_coding processed_transcript MGP_AJ_T0005571.1 MGP_AJ_G0004695.1 mouse_genomes_project X 2767210 2769746 + Rbm3os antisense antisense MGP_AJ_T0005572.1 MGP_AJ_G0004695.1 mouse_genomes_project X 2767698 2769458 + Rbm3os antisense antisense MGP_AJ_T0098129.1 MGP_AJ_G0036221.1 mouse_genomes_project X 161337393 161379104 + MGP_AJ_P0098129 Tmem27 protein_coding protein_coding MGP_AJ_T0098130.1 MGP_AJ_G0036221.1 mouse_genomes_project X 161338744 161379103 + MGP_AJ_P0098130 Tmem27 protein_coding protein_coding MGP_AJ_T0098131.1 MGP_AJ_G0036221.1 mouse_genomes_project X 161340742 161378458 + MGP_AJ_P0098131 Tmem27 protein_coding protein_coding MGP_AJ_T0009448.1 MGP_AJ_G0007574.1 mouse_genomes_project X 163948525 163979492 + Gm1720 lincRNA lincRNA MGP_AJ_T0096840.1 MGP_AJ_G0035865.1 mouse_genomes_project X 74589244 74718019 - MGP_AJ_P0096840 Prrg1 protein_coding protein_coding MGP_AJ_T0096841.1 MGP_AJ_G0035865.1 mouse_genomes_project X 74589244 74718128 - MGP_AJ_P0096841 Prrg1 protein_coding protein_coding MGP_AJ_T0096842.1 MGP_AJ_G0035865.1 mouse_genomes_project X 74589244 74718133 - MGP_AJ_P0096842 Prrg1 protein_coding protein_coding MGP_AJ_T0096843.1 MGP_AJ_G0035865.1 mouse_genomes_project X 74609001 74718092 - Prrg1 protein_coding processed_transcript MGP_AJ_T0096844.1 MGP_AJ_G0035865.1 mouse_genomes_project X 74619403 74718019 - Prrg1 protein_coding retained_intron MGP_AJ_T0096845.1 MGP_AJ_G0035865.1 mouse_genomes_project X 74619420 74718133 - Prrg1 protein_coding retained_intron MGP_AJ_T0096846.1 MGP_AJ_G0035865.1 mouse_genomes_project X 74622496 74718131 - MGP_AJ_P0096846 Prrg1 protein_coding protein_coding MGP_AJ_T0096847.1 MGP_AJ_G0035865.1 mouse_genomes_project X 74649675 74718128 - Prrg1 protein_coding retained_intron MGP_AJ_T0096848.1 MGP_AJ_G0035865.1 mouse_genomes_project X 74652708 74718127 - Prrg1 protein_coding retained_intron MGP_AJ_T0096849.1 MGP_AJ_G0035865.1 mouse_genomes_project X 74653174 74718089 - Prrg1 protein_coding processed_transcript MGP_AJ_T0101652.1 MGP_AJ_G0039618.1 mouse_genomes_project X 144357364 144357493 - Gm25107 snoRNA snoRNA MGP_AJ_T0097274.1 MGP_AJ_G0035982.1 mouse_genomes_project X 102699423 102699842 + protein_coding retained_intron MGP_AJ_T0097275.1 MGP_AJ_G0035982.1 mouse_genomes_project X 102699448 102722421 + MGP_AJ_P0097275 protein_coding protein_coding MGP_AJ_T0016456.1 MGP_AJ_G0014551.1 mouse_genomes_project X 74535608 74536128 + processed_pseudogene processed_pseudogene MGP_AJ_T0016824.1 MGP_AJ_G0014919.1 mouse_genomes_project X 148603539 148604454 + processed_pseudogene processed_pseudogene MGP_AJ_T0096317.1 MGP_AJ_G0035741.1 mouse_genomes_project X 56483551 56485617 - MGP_AJ_P0096317 Sox3 protein_coding protein_coding MGP_AJ_T0102928.1 MGP_AJ_G0040668.1 mouse_genomes_project X 3288873 3288965 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0005566.1 MGP_AJ_G0004694.1 mouse_genomes_project X 2663647 2694366 + Gm14820 antisense antisense MGP_AJ_T0005567.1 MGP_AJ_G0004694.1 mouse_genomes_project X 2669155 2680224 + Gm14820 antisense antisense MGP_AJ_T0005568.1 MGP_AJ_G0004694.1 mouse_genomes_project X 2669231 2695084 + Gm14820 antisense antisense MGP_AJ_T0005569.1 MGP_AJ_G0004694.1 mouse_genomes_project X 2669311 2696744 + Gm14820 antisense antisense MGP_AJ_T0005570.1 MGP_AJ_G0004694.1 mouse_genomes_project X 2671510 2695081 + Gm14820 antisense antisense MGP_AJ_T0096441.1 MGP_AJ_G0035788.1 mouse_genomes_project X 69289841 69306283 + MGP_AJ_P0096441 Zfp275 protein_coding protein_coding MGP_AJ_T0096442.1 MGP_AJ_G0035788.1 mouse_genomes_project X 69291661 69299041 + Zfp275 protein_coding retained_intron MGP_AJ_T0016901.1 MGP_AJ_G0014996.1 mouse_genomes_project X 163764946 163765772 + processed_pseudogene processed_pseudogene MGP_AJ_T0096419.1 MGP_AJ_G0035776.1 mouse_genomes_project X 68288352 68293294 - MGP_AJ_P0096419 Magea10 protein_coding protein_coding MGP_AJ_T0096761.1 MGP_AJ_G0035839.1 mouse_genomes_project X 71019805 71122013 - MGP_AJ_P0096761 Gab3 protein_coding protein_coding MGP_AJ_T0096762.1 MGP_AJ_G0035839.1 mouse_genomes_project X 71019981 71121938 - MGP_AJ_P0096762 Gab3 protein_coding protein_coding MGP_AJ_T0096763.1 MGP_AJ_G0035839.1 mouse_genomes_project X 71019983 71122388 - Gab3 protein_coding processed_transcript MGP_AJ_T0096499.1 MGP_AJ_G0035802.1 mouse_genomes_project X 69759288 69763085 + MGP_AJ_P0096499 Ssr4 protein_coding protein_coding MGP_AJ_T0096500.1 MGP_AJ_G0035802.1 mouse_genomes_project X 69759322 69763087 + MGP_AJ_P0096500 Ssr4 protein_coding protein_coding MGP_AJ_T0096501.1 MGP_AJ_G0035802.1 mouse_genomes_project X 69759442 69761353 + Ssr4 protein_coding retained_intron MGP_AJ_T0096502.1 MGP_AJ_G0035802.1 mouse_genomes_project X 69759444 69762593 + Ssr4 protein_coding retained_intron MGP_AJ_T0096503.1 MGP_AJ_G0035802.1 mouse_genomes_project X 69759444 69763087 + Ssr4 protein_coding retained_intron MGP_AJ_T0096504.1 MGP_AJ_G0035802.1 mouse_genomes_project X 69759484 69763072 + Ssr4 protein_coding retained_intron MGP_AJ_T0096505.1 MGP_AJ_G0035802.1 mouse_genomes_project X 69759525 69762424 + Ssr4 protein_coding retained_intron MGP_AJ_T0096506.1 MGP_AJ_G0035802.1 mouse_genomes_project X 69761104 69763091 + Ssr4 protein_coding retained_intron MGP_AJ_T0005590.1 MGP_AJ_G0004711.1 mouse_genomes_project X 71630020 71630728 + Gm15384 antisense antisense MGP_AJ_T0095987.1 MGP_AJ_G0035631.1 mouse_genomes_project X 32715520 32717557 - protein_coding retained_intron MGP_AJ_T0095989.1 MGP_AJ_G0035631.1 mouse_genomes_project X 32716712 32717909 - MGP_AJ_P0095989 protein_coding protein_coding MGP_AJ_T0097111.1 MGP_AJ_G0035941.1 mouse_genomes_project X 97769542 97773584 - MGP_AJ_P0097111 Il2rg protein_coding protein_coding MGP_AJ_T0097112.1 MGP_AJ_G0035941.1 mouse_genomes_project X 97770102 97772763 - MGP_AJ_P0097112 Il2rg protein_coding protein_coding MGP_AJ_T0097113.1 MGP_AJ_G0035941.1 mouse_genomes_project X 97771994 97773519 - Il2rg protein_coding retained_intron MGP_AJ_T0097114.1 MGP_AJ_G0035941.1 mouse_genomes_project X 97772524 97773487 - Il2rg protein_coding processed_transcript MGP_AJ_T0016680.1 MGP_AJ_G0014775.1 mouse_genomes_project X 114442695 114443104 - processed_pseudogene processed_pseudogene MGP_AJ_T0018682.1 MGP_AJ_G0015771.1 mouse_genomes_project X 149321399 149352260 + processed_transcript processed_transcript MGP_AJ_T0018683.1 MGP_AJ_G0015771.1 mouse_genomes_project X 149322213 149338042 + processed_transcript processed_transcript MGP_AJ_T0011168.1 MGP_AJ_G0009290.1 mouse_genomes_project X 62579688 62579768 - Mir465b-1 miRNA miRNA MGP_AJ_T0016250.1 MGP_AJ_G0014345.1 mouse_genomes_project X 14412834 14413330 - processed_pseudogene processed_pseudogene MGP_AJ_T0096522.1 MGP_AJ_G0035805.1 mouse_genomes_project X 69867791 69887408 - MGP_AJ_P0096522 Arhgap4 protein_coding protein_coding MGP_AJ_T0096527.1 MGP_AJ_G0035805.1 mouse_genomes_project X 69870701 69887402 - MGP_AJ_P0096527 Arhgap4 protein_coding protein_coding MGP_AJ_T0096528.1 MGP_AJ_G0035805.1 mouse_genomes_project X 69870707 69887368 - MGP_AJ_P0096528 Arhgap4 protein_coding protein_coding MGP_AJ_T0096529.1 MGP_AJ_G0035805.1 mouse_genomes_project X 69870881 69887343 - Arhgap4 protein_coding retained_intron MGP_AJ_T0096530.1 MGP_AJ_G0035805.1 mouse_genomes_project X 69870881 69887343 - Arhgap4 protein_coding retained_intron MGP_AJ_T0096531.1 MGP_AJ_G0035805.1 mouse_genomes_project X 69870881 69887343 - Arhgap4 protein_coding retained_intron MGP_AJ_T0096532.1 MGP_AJ_G0035805.1 mouse_genomes_project X 69870881 69887343 - Arhgap4 protein_coding retained_intron MGP_AJ_T0096533.1 MGP_AJ_G0035805.1 mouse_genomes_project X 69870881 69887343 - Arhgap4 protein_coding retained_intron MGP_AJ_T0096534.1 MGP_AJ_G0035805.1 mouse_genomes_project X 69870881 69887343 - MGP_AJ_P0096534 Arhgap4 protein_coding protein_coding MGP_AJ_T0096535.1 MGP_AJ_G0035805.1 mouse_genomes_project X 69870881 69887343 - MGP_AJ_P0096535 Arhgap4 protein_coding nonsense_mediated_decay MGP_AJ_T0096536.1 MGP_AJ_G0035805.1 mouse_genomes_project X 69870887 69887343 - MGP_AJ_P0096536 Arhgap4 protein_coding nonsense_mediated_decay MGP_AJ_T0096537.1 MGP_AJ_G0035805.1 mouse_genomes_project X 69871025 69887301 - MGP_AJ_P0096537 Arhgap4 protein_coding protein_coding MGP_AJ_T0096538.1 MGP_AJ_G0035805.1 mouse_genomes_project X 69872760 69873776 - Arhgap4 protein_coding processed_transcript MGP_AJ_T0096539.1 MGP_AJ_G0035805.1 mouse_genomes_project X 69873163 69874416 - MGP_AJ_P0096539 Arhgap4 protein_coding protein_coding MGP_AJ_T0096540.1 MGP_AJ_G0035805.1 mouse_genomes_project X 69873220 69875976 - MGP_AJ_P0096540 Arhgap4 protein_coding protein_coding MGP_AJ_T0096541.1 MGP_AJ_G0035805.1 mouse_genomes_project X 69875662 69899560 - Arhgap4 protein_coding retained_intron MGP_AJ_T0096542.1 MGP_AJ_G0035805.1 mouse_genomes_project X 69875666 69877088 - Arhgap4 protein_coding processed_transcript MGP_AJ_T0096543.1 MGP_AJ_G0035805.1 mouse_genomes_project X 69876458 69881730 - MGP_AJ_P0096543 Arhgap4 protein_coding protein_coding MGP_AJ_T0096544.1 MGP_AJ_G0035805.1 mouse_genomes_project X 69882458 69887370 - Arhgap4 protein_coding processed_transcript MGP_AJ_T0096545.1 MGP_AJ_G0035805.1 mouse_genomes_project X 69882851 69887365 - MGP_AJ_P0096545 Arhgap4 protein_coding nonsense_mediated_decay MGP_AJ_T0016552.1 MGP_AJ_G0014647.1 mouse_genomes_project X 93078174 93079882 + processed_pseudogene processed_pseudogene MGP_AJ_T0096485.1 MGP_AJ_G0035800.1 mouse_genomes_project X 69746594 69751186 + Srpk3 protein_coding retained_intron MGP_AJ_T0096486.1 MGP_AJ_G0035800.1 mouse_genomes_project X 69746594 69751195 + MGP_AJ_P0096486 Srpk3 protein_coding unknown_likely_coding MGP_AJ_T0096487.1 MGP_AJ_G0035800.1 mouse_genomes_project X 69746594 69751186 + MGP_AJ_P0096487 Srpk3 protein_coding protein_coding MGP_AJ_T0096488.1 MGP_AJ_G0035800.1 mouse_genomes_project X 69750205 69750863 + Srpk3 protein_coding retained_intron MGP_AJ_T0096489.1 MGP_AJ_G0035800.1 mouse_genomes_project X 69750238 69750989 + Srpk3 protein_coding retained_intron MGP_AJ_T0095536.1 MGP_AJ_G0035491.1 mouse_genomes_project X 2166415 2178273 - MGP_AJ_P0095536 Ccdc22 protein_coding protein_coding MGP_AJ_T0095537.1 MGP_AJ_G0035491.1 mouse_genomes_project X 2166416 2169886 - Ccdc22 protein_coding retained_intron MGP_AJ_T0016686.1 MGP_AJ_G0014781.1 mouse_genomes_project X 115902790 115903528 + processed_pseudogene processed_pseudogene MGP_AJ_T0016482.1 MGP_AJ_G0014577.1 mouse_genomes_project X 81596392 81596718 + processed_pseudogene processed_pseudogene MGP_AJ_T0011762.1 MGP_AJ_G0009884.1 mouse_genomes_project X 97252552 97252880 + Gm22160 misc_RNA misc_RNA MGP_AJ_T0016592.1 MGP_AJ_G0014687.1 mouse_genomes_project X 99847553 99849357 - processed_pseudogene processed_pseudogene MGP_AJ_T0097226.1 MGP_AJ_G0035971.1 mouse_genomes_project X 100857234 100993807 - MGP_AJ_P0097226 Abcb7 protein_coding protein_coding MGP_AJ_T0097227.1 MGP_AJ_G0035971.1 mouse_genomes_project X 100921773 100993817 - Abcb7 protein_coding retained_intron MGP_AJ_T0016217.1 MGP_AJ_G0014312.1 mouse_genomes_project X 6091025 6091654 + processed_pseudogene processed_pseudogene MGP_AJ_T0016263.1 MGP_AJ_G0014358.1 mouse_genomes_project X 16517072 16518485 + processed_pseudogene processed_pseudogene MGP_AJ_T0096218.1 MGP_AJ_G0035705.1 mouse_genomes_project X 48370482 48399240 + MGP_AJ_P0096218 Fam122c protein_coding protein_coding MGP_AJ_T0096219.1 MGP_AJ_G0035705.1 mouse_genomes_project X 48370482 48429379 + MGP_AJ_P0096219 Fam122c protein_coding nonsense_mediated_decay MGP_AJ_T0096220.1 MGP_AJ_G0035705.1 mouse_genomes_project X 48370491 48429379 + MGP_AJ_P0096220 Fam122c protein_coding protein_coding MGP_AJ_T0016417.1 MGP_AJ_G0014512.1 mouse_genomes_project X 66503462 66503807 - processed_pseudogene processed_pseudogene MGP_AJ_T0097476.1 MGP_AJ_G0036052.1 mouse_genomes_project X 131186572 131188975 + MGP_AJ_P0097476 Rpl36a protein_coding protein_coding MGP_AJ_T0097477.1 MGP_AJ_G0036052.1 mouse_genomes_project X 131186607 131188981 + Rpl36a protein_coding retained_intron MGP_AJ_T0097478.1 MGP_AJ_G0036052.1 mouse_genomes_project X 131186608 131188981 + MGP_AJ_P0097478 Rpl36a protein_coding nonsense_mediated_decay MGP_AJ_T0097479.1 MGP_AJ_G0036052.1 mouse_genomes_project X 131186619 131188952 + Rpl36a protein_coding retained_intron MGP_AJ_T0097480.1 MGP_AJ_G0036052.1 mouse_genomes_project X 131187008 131187935 + Rpl36a protein_coding retained_intron MGP_AJ_T0097481.1 MGP_AJ_G0036052.1 mouse_genomes_project X 131187999 131188915 + Rpl36a protein_coding retained_intron MGP_AJ_T0097056.1 MGP_AJ_G0035925.1 mouse_genomes_project X 96918269 96919142 + MGP_AJ_P0097056 Otud6a protein_coding protein_coding MGP_AJ_T0101907.1 MGP_AJ_G0039770.1 mouse_genomes_project X 124837147 124837789 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0016788.1 MGP_AJ_G0014883.1 mouse_genomes_project X 141008326 141010773 + processed_pseudogene processed_pseudogene MGP_AJ_T0016517.1 MGP_AJ_G0014612.1 mouse_genomes_project X 87990610 87991757 + processed_pseudogene processed_pseudogene MGP_AJ_T0097043.1 MGP_AJ_G0035923.1 mouse_genomes_project X 96471070 96790973 + Eda protein_coding retained_intron MGP_AJ_T0097044.1 MGP_AJ_G0035923.1 mouse_genomes_project X 96471070 96890083 + MGP_AJ_P0097044 Eda protein_coding protein_coding MGP_AJ_T0097045.1 MGP_AJ_G0035923.1 mouse_genomes_project X 96471070 96890080 + MGP_AJ_P0097045 Eda protein_coding protein_coding MGP_AJ_T0097046.1 MGP_AJ_G0035923.1 mouse_genomes_project X 96471070 96890080 + MGP_AJ_P0097046 Eda protein_coding protein_coding MGP_AJ_T0097047.1 MGP_AJ_G0035923.1 mouse_genomes_project X 96471070 96890081 + MGP_AJ_P0097047 Eda protein_coding protein_coding MGP_AJ_T0097048.1 MGP_AJ_G0035923.1 mouse_genomes_project X 96471070 96890081 + MGP_AJ_P0097048 Eda protein_coding protein_coding MGP_AJ_T0097049.1 MGP_AJ_G0035923.1 mouse_genomes_project X 96471070 96890081 + MGP_AJ_P0097049 Eda protein_coding protein_coding MGP_AJ_T0097050.1 MGP_AJ_G0035923.1 mouse_genomes_project X 96471070 96890083 + MGP_AJ_P0097050 Eda protein_coding protein_coding MGP_AJ_T0097051.1 MGP_AJ_G0035923.1 mouse_genomes_project X 96471245 96886477 + MGP_AJ_P0097051 Eda protein_coding protein_coding MGP_AJ_T0097052.1 MGP_AJ_G0035923.1 mouse_genomes_project X 96471245 96885133 + MGP_AJ_P0097052 Eda protein_coding protein_coding MGP_AJ_T0097053.1 MGP_AJ_G0035923.1 mouse_genomes_project X 96873684 96883759 + Eda protein_coding processed_transcript MGP_AJ_T0097054.1 MGP_AJ_G0035923.1 mouse_genomes_project X 96876565 96884357 + Eda protein_coding processed_transcript MGP_AJ_T0016572.1 MGP_AJ_G0014667.1 mouse_genomes_project X 97992350 97992562 + processed_pseudogene processed_pseudogene MGP_AJ_T0097965.1 MGP_AJ_G0036183.1 mouse_genomes_project X 152493095 152507814 - MGP_AJ_P0097965 Prdx4 protein_coding protein_coding MGP_AJ_T0097966.1 MGP_AJ_G0036183.1 mouse_genomes_project X 152497623 152510101 - MGP_AJ_P0097966 Prdx4 protein_coding protein_coding MGP_AJ_T0097967.1 MGP_AJ_G0036183.1 mouse_genomes_project X 152506138 152507821 - Prdx4 protein_coding processed_transcript MGP_AJ_T0016886.1 MGP_AJ_G0014981.1 mouse_genomes_project X 160080216 160080658 - processed_pseudogene processed_pseudogene MGP_AJ_T0016199.1 MGP_AJ_G0014294.1 mouse_genomes_project X 2260353 2260757 + processed_pseudogene processed_pseudogene MGP_AJ_T0101628.1 MGP_AJ_G0039594.1 mouse_genomes_project X 90961190 90961300 - Gm24595 snoRNA snoRNA MGP_AJ_T0097234.1 MGP_AJ_G0035976.1 mouse_genomes_project X 101688329 101691879 + MGP_AJ_P0097234 Magee1 protein_coding protein_coding MGP_AJ_T0016238.1 MGP_AJ_G0014333.1 mouse_genomes_project X 10471910 10472247 - processed_pseudogene processed_pseudogene MGP_AJ_T0016637.1 MGP_AJ_G0014732.1 mouse_genomes_project X 106628480 106630037 + processed_pseudogene processed_pseudogene MGP_AJ_T0009453.1 MGP_AJ_G0007577.1 mouse_genomes_project X 164396210 164410872 - Gm15232 lincRNA lincRNA MGP_AJ_T0016614.1 MGP_AJ_G0014709.1 mouse_genomes_project X 102057156 102057762 + processed_pseudogene processed_pseudogene MGP_AJ_T0097564.1 MGP_AJ_G0036079.1 mouse_genomes_project X 133044144 133044802 + MGP_AJ_P0097564 Ngfrap1 protein_coding protein_coding MGP_AJ_T0011181.1 MGP_AJ_G0009303.1 mouse_genomes_project X 70256332 70256411 - Mir7091 miRNA miRNA MGP_AJ_T0100369.1 MGP_AJ_G0038335.1 mouse_genomes_project X 107379162 107379353 - Gm26108 snRNA snRNA MGP_AJ_T0016526.1 MGP_AJ_G0014621.1 mouse_genomes_project X 90389830 90391498 - processed_pseudogene processed_pseudogene MGP_AJ_T0095958.1 MGP_AJ_G0035609.1 mouse_genomes_project X 32138262 32163480 + MGP_AJ_P0095958 Nkap protein_coding protein_coding MGP_AJ_T0095959.1 MGP_AJ_G0035609.1 mouse_genomes_project X 32147483 32155320 + Nkap protein_coding retained_intron MGP_AJ_T0009394.1 MGP_AJ_G0007539.1 mouse_genomes_project X 64384298 64395154 - Fmr1os lincRNA lincRNA MGP_AJ_T0011784.1 MGP_AJ_G0009906.1 mouse_genomes_project X 159923218 159923533 + Gm25557 misc_RNA misc_RNA MGP_AJ_T0002478.1 MGP_AJ_G0002387.1 mouse_genomes_project X 100165874 100170555 - TEC TEC MGP_AJ_T0016540.1 MGP_AJ_G0014635.1 mouse_genomes_project X 91182155 91183773 - processed_pseudogene processed_pseudogene MGP_AJ_T0011211.1 MGP_AJ_G0009333.1 mouse_genomes_project X 140717755 140717886 - miRNA miRNA MGP_AJ_T0016214.1 MGP_AJ_G0014309.1 mouse_genomes_project X 5538628 5539094 + processed_pseudogene processed_pseudogene MGP_AJ_T0096170.1 MGP_AJ_G0035686.1 mouse_genomes_project X 44725333 44726293 - MGP_AJ_P0096170 Olfr1321 protein_coding protein_coding MGP_AJ_T0011115.1 MGP_AJ_G0009237.1 mouse_genomes_project X 1810881 1810977 - Mir532 miRNA miRNA MGP_AJ_T0095748.1 MGP_AJ_G0035542.1 mouse_genomes_project X 5586958 5588394 + Mid1ip1 protein_coding processed_transcript MGP_AJ_T0095749.1 MGP_AJ_G0035542.1 mouse_genomes_project X 5586964 5590330 + MGP_AJ_P0095749 Mid1ip1 protein_coding protein_coding MGP_AJ_T0095750.1 MGP_AJ_G0035542.1 mouse_genomes_project X 5589335 5591636 + MGP_AJ_P0095750 Mid1ip1 protein_coding protein_coding MGP_AJ_T0095751.1 MGP_AJ_G0035542.1 mouse_genomes_project X 5589335 5591636 + MGP_AJ_P0095751 Mid1ip1 protein_coding protein_coding MGP_AJ_T0095752.1 MGP_AJ_G0035542.1 mouse_genomes_project X 5589413 5590330 + MGP_AJ_P0095752 Mid1ip1 protein_coding protein_coding MGP_AJ_T0096405.1 MGP_AJ_G0035770.1 mouse_genomes_project X 67844416 67861378 + MGP_AJ_P0096405 Gm1141 protein_coding protein_coding MGP_AJ_T0096406.1 MGP_AJ_G0035770.1 mouse_genomes_project X 67850095 67857433 + MGP_AJ_P0096406 Gm1141 protein_coding protein_coding MGP_AJ_T0096232.1 MGP_AJ_G0035715.1 mouse_genomes_project X 51825753 51844891 + MGP_AJ_P0096232 Zfp449 protein_coding protein_coding MGP_AJ_T0100384.1 MGP_AJ_G0038350.1 mouse_genomes_project X 148331465 148331615 + Gm22248 snRNA snRNA MGP_AJ_T0097176.1 MGP_AJ_G0035952.1 mouse_genomes_project X 98377185 98479801 + Nhsl2 protein_coding processed_transcript MGP_AJ_T0097177.1 MGP_AJ_G0035952.1 mouse_genomes_project X 98377185 98609667 + MGP_AJ_P0097177 Nhsl2 protein_coding protein_coding MGP_AJ_T0097178.1 MGP_AJ_G0035952.1 mouse_genomes_project X 98377185 98625235 + MGP_AJ_P0097178 Nhsl2 protein_coding protein_coding MGP_AJ_T0097179.1 MGP_AJ_G0035952.1 mouse_genomes_project X 98491962 98611272 + Nhsl2 protein_coding processed_transcript MGP_AJ_T0097180.1 MGP_AJ_G0035952.1 mouse_genomes_project X 98535541 98611247 + MGP_AJ_P0097180 Nhsl2 protein_coding protein_coding MGP_AJ_T0097181.1 MGP_AJ_G0035952.1 mouse_genomes_project X 98584577 98605357 + Nhsl2 protein_coding processed_transcript MGP_AJ_T0097185.1 MGP_AJ_G0035952.1 mouse_genomes_project X 98606332 98613691 + Nhsl2 protein_coding processed_transcript MGP_AJ_T0016596.1 MGP_AJ_G0014691.1 mouse_genomes_project X 100066694 100067149 + processed_pseudogene processed_pseudogene MGP_AJ_T0097276.1 MGP_AJ_G0035983.1 mouse_genomes_project X 102750284 102769444 + MGP_AJ_P0097276 protein_coding protein_coding MGP_AJ_T0097277.1 MGP_AJ_G0035983.1 mouse_genomes_project X 102754783 102758069 + protein_coding retained_intron MGP_AJ_T0016255.1 MGP_AJ_G0014350.1 mouse_genomes_project X 15316489 15316895 + processed_pseudogene processed_pseudogene MGP_AJ_T0011160.1 MGP_AJ_G0009282.1 mouse_genomes_project X 62547230 62547305 - Mir463 miRNA miRNA MGP_AJ_T0097887.1 MGP_AJ_G0036156.1 mouse_genomes_project X 148946711 148949319 + MGP_AJ_P0097887 Hsd17b10 protein_coding protein_coding MGP_AJ_T0097888.1 MGP_AJ_G0036156.1 mouse_genomes_project X 148946711 148949319 + MGP_AJ_P0097888 Hsd17b10 protein_coding protein_coding MGP_AJ_T0097889.1 MGP_AJ_G0036156.1 mouse_genomes_project X 148947015 148949319 + Hsd17b10 protein_coding processed_transcript MGP_AJ_T0097890.1 MGP_AJ_G0036156.1 mouse_genomes_project X 148948273 148949319 + Hsd17b10 protein_coding retained_intron MGP_AJ_T0016709.1 MGP_AJ_G0014804.1 mouse_genomes_project X 126023233 126024019 + processed_pseudogene processed_pseudogene MGP_AJ_T0016372.1 MGP_AJ_G0014467.1 mouse_genomes_project X 57080565 57081408 + processed_pseudogene processed_pseudogene MGP_AJ_T0097339.1 MGP_AJ_G0036006.1 mouse_genomes_project X 107918480 107918834 + MGP_AJ_P0097339 Gm10112 protein_coding protein_coding MGP_AJ_T0096944.1 MGP_AJ_G0035896.1 mouse_genomes_project X 90857482 90869157 - MGP_AJ_P0096944 Fam90a1b protein_coding protein_coding MGP_AJ_T0096945.1 MGP_AJ_G0035896.1 mouse_genomes_project X 90858301 90868159 - MGP_AJ_P0096945 Fam90a1b protein_coding protein_coding MGP_AJ_T0096946.1 MGP_AJ_G0035896.1 mouse_genomes_project X 90859585 90868431 - MGP_AJ_P0096946 Fam90a1b protein_coding protein_coding MGP_AJ_T0097635.1 MGP_AJ_G0036103.1 mouse_genomes_project X 136441729 136560889 + MGP_AJ_P0097635 Rnf128 protein_coding protein_coding MGP_AJ_T0097636.1 MGP_AJ_G0036103.1 mouse_genomes_project X 136493566 136560896 + MGP_AJ_P0097636 Rnf128 protein_coding protein_coding MGP_AJ_T0097637.1 MGP_AJ_G0036103.1 mouse_genomes_project X 136494313 136559492 + Rnf128 protein_coding processed_transcript MGP_AJ_T0016907.1 MGP_AJ_G0015002.1 mouse_genomes_project X 165399184 165399653 + processed_pseudogene processed_pseudogene MGP_AJ_T0096993.1 MGP_AJ_G0035910.1 mouse_genomes_project X 92788957 92821378 - MGP_AJ_P0096993 Vsig4 protein_coding protein_coding MGP_AJ_T0096994.1 MGP_AJ_G0035910.1 mouse_genomes_project X 92791704 92821352 - Vsig4 protein_coding processed_transcript MGP_AJ_T0101608.1 MGP_AJ_G0039574.1 mouse_genomes_project X 31763073 31763160 + Gm23613 snoRNA snoRNA MGP_AJ_T0016512.1 MGP_AJ_G0014607.1 mouse_genomes_project X 87676978 87679854 - processed_pseudogene processed_pseudogene MGP_AJ_T0016682.1 MGP_AJ_G0014777.1 mouse_genomes_project X 114444325 114447020 - processed_pseudogene processed_pseudogene MGP_AJ_T0097935.1 MGP_AJ_G0036170.1 mouse_genomes_project X 150234931 150375831 + MGP_AJ_P0097935 protein_coding protein_coding MGP_AJ_T0097936.1 MGP_AJ_G0036170.1 mouse_genomes_project X 150374794 150396687 + MGP_AJ_P0097936 protein_coding unknown_likely_coding MGP_AJ_T0011195.1 MGP_AJ_G0009317.1 mouse_genomes_project X 100667014 100667105 + Gm24993 miRNA miRNA MGP_AJ_T0016530.1 MGP_AJ_G0014625.1 mouse_genomes_project X 90497503 90498377 + processed_pseudogene processed_pseudogene MGP_AJ_T0016403.1 MGP_AJ_G0014498.1 mouse_genomes_project X 64226677 64227683 + processed_pseudogene processed_pseudogene MGP_AJ_T0009384.1 MGP_AJ_G0007533.1 mouse_genomes_project X 44324798 44356548 - Gm14696 lincRNA lincRNA MGP_AJ_T0016445.1 MGP_AJ_G0014540.1 mouse_genomes_project X 72763444 72764159 + processed_pseudogene processed_pseudogene MGP_AJ_T0097075.1 MGP_AJ_G0035932.1 mouse_genomes_project X 97128878 97228660 + MGP_AJ_P0097075 Kif4 protein_coding protein_coding MGP_AJ_T0097076.1 MGP_AJ_G0035932.1 mouse_genomes_project X 97137330 97139680 + Kif4 protein_coding retained_intron MGP_AJ_T0097077.1 MGP_AJ_G0035932.1 mouse_genomes_project X 97212843 97226096 + Kif4 protein_coding processed_transcript MGP_AJ_T0016218.1 MGP_AJ_G0014313.1 mouse_genomes_project X 6499496 6499712 + processed_pseudogene processed_pseudogene MGP_AJ_T0095971.1 MGP_AJ_G0035619.1 mouse_genomes_project X 32430854 32432022 + MGP_AJ_P0095971 protein_coding protein_coding MGP_AJ_T0095972.1 MGP_AJ_G0035619.1 mouse_genomes_project X 32431185 32433177 + protein_coding retained_intron MGP_AJ_T0016419.1 MGP_AJ_G0014514.1 mouse_genomes_project X 66816641 66817272 + processed_pseudogene processed_pseudogene MGP_AJ_T0096006.1 MGP_AJ_G0035643.1 mouse_genomes_project X 33077765 33087414 - MGP_AJ_P0096006 Rhox11 protein_coding protein_coding MGP_AJ_T0011771.1 MGP_AJ_G0009893.1 mouse_genomes_project X 123836144 123836419 + Gm22636 misc_RNA misc_RNA MGP_AJ_T0016409.1 MGP_AJ_G0014504.1 mouse_genomes_project X 66182448 66184836 - processed_pseudogene processed_pseudogene MGP_AJ_T0016584.1 MGP_AJ_G0014679.1 mouse_genomes_project X 99628219 99628909 - processed_pseudogene processed_pseudogene MGP_AJ_T0096131.1 MGP_AJ_G0035675.1 mouse_genomes_project X 43428608 43474400 - MGP_AJ_P0096131 Elf4 protein_coding protein_coding MGP_AJ_T0096132.1 MGP_AJ_G0035675.1 mouse_genomes_project X 43428611 43483324 - MGP_AJ_P0096132 Elf4 protein_coding protein_coding MGP_AJ_T0096133.1 MGP_AJ_G0035675.1 mouse_genomes_project X 43434208 43483324 - MGP_AJ_P0096133 Elf4 protein_coding protein_coding MGP_AJ_T0095564.1 MGP_AJ_G0035497.1 mouse_genomes_project X 2274087 2287045 + MGP_AJ_P0095564 Gpkow protein_coding protein_coding MGP_AJ_T0095565.1 MGP_AJ_G0035497.1 mouse_genomes_project X 2280590 2285556 + MGP_AJ_P0095565 Gpkow protein_coding protein_coding MGP_AJ_T0095566.1 MGP_AJ_G0035497.1 mouse_genomes_project X 2282938 2285745 + Gpkow protein_coding retained_intron MGP_AJ_T0100354.1 MGP_AJ_G0038320.1 mouse_genomes_project X 84461753 84461860 + Gm25006 snRNA snRNA MGP_AJ_T0016224.1 MGP_AJ_G0014319.1 mouse_genomes_project X 7377735 7378537 - processed_pseudogene processed_pseudogene MGP_AJ_T0097174.1 MGP_AJ_G0035951.1 mouse_genomes_project X 98314578 98318618 + MGP_AJ_P0097174 protein_coding protein_coding MGP_AJ_T0097175.1 MGP_AJ_G0035951.1 mouse_genomes_project X 98315544 98318614 + MGP_AJ_P0097175 protein_coding protein_coding MGP_AJ_T0016545.1 MGP_AJ_G0014640.1 mouse_genomes_project X 91771377 91773384 - processed_pseudogene processed_pseudogene MGP_AJ_T0016194.1 MGP_AJ_G0014289.1 mouse_genomes_project X 661459 662050 + processed_pseudogene processed_pseudogene MGP_AJ_T0016525.1 MGP_AJ_G0014620.1 mouse_genomes_project X 90108591 90108862 + processed_pseudogene processed_pseudogene MGP_AJ_T0096038.1 MGP_AJ_G0035655.1 mouse_genomes_project X 36439385 36649171 + Gria3 protein_coding retained_intron MGP_AJ_T0096039.1 MGP_AJ_G0035655.1 mouse_genomes_project X 36442361 36715660 + MGP_AJ_P0096039 Gria3 protein_coding protein_coding MGP_AJ_T0096040.1 MGP_AJ_G0035655.1 mouse_genomes_project X 36442451 36717908 + MGP_AJ_P0096040 Gria3 protein_coding protein_coding MGP_AJ_T0096041.1 MGP_AJ_G0035655.1 mouse_genomes_project X 36442545 36715667 + Gria3 protein_coding retained_intron MGP_AJ_T0096042.1 MGP_AJ_G0035655.1 mouse_genomes_project X 36442583 36717905 + MGP_AJ_P0096042 Gria3 protein_coding nonsense_mediated_decay MGP_AJ_T0096043.1 MGP_AJ_G0035655.1 mouse_genomes_project X 36442629 36649626 + Gria3 protein_coding retained_intron MGP_AJ_T0096044.1 MGP_AJ_G0035655.1 mouse_genomes_project X 36442712 36707108 + MGP_AJ_P0096044 Gria3 protein_coding protein_coding MGP_AJ_T0096045.1 MGP_AJ_G0035655.1 mouse_genomes_project X 36443887 36517579 + MGP_AJ_P0096045 Gria3 protein_coding protein_coding MGP_AJ_T0096046.1 MGP_AJ_G0035655.1 mouse_genomes_project X 36646268 36657334 + Gria3 protein_coding retained_intron MGP_AJ_T0016835.1 MGP_AJ_G0014930.1 mouse_genomes_project X 150806311 150806591 + processed_pseudogene processed_pseudogene MGP_AJ_T0016610.1 MGP_AJ_G0014705.1 mouse_genomes_project X 101600249 101601030 + processed_pseudogene processed_pseudogene MGP_AJ_T0016547.1 MGP_AJ_G0014642.1 mouse_genomes_project X 91872661 91874732 - processed_pseudogene processed_pseudogene MGP_AJ_T0102950.1 MGP_AJ_G0040690.1 mouse_genomes_project X 74041550 74047990 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0095683.1 MGP_AJ_G0035519.1 mouse_genomes_project X 2776253 2799735 - MGP_AJ_P0095683 Tbc1d25 protein_coding protein_coding MGP_AJ_T0095684.1 MGP_AJ_G0035519.1 mouse_genomes_project X 2776253 2799735 - MGP_AJ_P0095684 Tbc1d25 protein_coding protein_coding MGP_AJ_T0095685.1 MGP_AJ_G0035519.1 mouse_genomes_project X 2776264 2799512 - Tbc1d25 protein_coding retained_intron MGP_AJ_T0095686.1 MGP_AJ_G0035519.1 mouse_genomes_project X 2776486 2799420 - MGP_AJ_P0095686 Tbc1d25 protein_coding protein_coding MGP_AJ_T0101614.1 MGP_AJ_G0039580.1 mouse_genomes_project X 64281680 64281806 + Gm22332 snoRNA snoRNA MGP_AJ_T0095511.1 MGP_AJ_G0035483.1 mouse_genomes_project X 1013129 1241792 + MGP_AJ_P0095511 Shroom4 protein_coding protein_coding MGP_AJ_T0095512.1 MGP_AJ_G0035483.1 mouse_genomes_project X 1028475 1196626 + MGP_AJ_P0095512 Shroom4 protein_coding protein_coding MGP_AJ_T0095687.1 MGP_AJ_G0035520.1 mouse_genomes_project X 2812354 2821294 - MGP_AJ_P0095687 Ebp protein_coding protein_coding MGP_AJ_T0095688.1 MGP_AJ_G0035520.1 mouse_genomes_project X 2812356 2814200 - Ebp protein_coding retained_intron MGP_AJ_T0095689.1 MGP_AJ_G0035520.1 mouse_genomes_project X 2813773 2821182 - MGP_AJ_P0095689 Ebp protein_coding protein_coding MGP_AJ_T0095690.1 MGP_AJ_G0035520.1 mouse_genomes_project X 2817695 2820680 - Ebp protein_coding retained_intron MGP_AJ_T0097324.1 MGP_AJ_G0035998.1 mouse_genomes_project X 105356136 105357024 - MGP_AJ_P0097324 Gm379 protein_coding protein_coding MGP_AJ_T0005575.1 MGP_AJ_G0004698.1 mouse_genomes_project X 31904038 31905201 + Gm15008 antisense antisense MGP_AJ_T0097801.1 MGP_AJ_G0036146.1 mouse_genomes_project X 147527504 147558877 + MGP_AJ_P0097801 Pfkfb1 protein_coding protein_coding MGP_AJ_T0097802.1 MGP_AJ_G0036146.1 mouse_genomes_project X 147527531 147553029 + Pfkfb1 protein_coding processed_transcript MGP_AJ_T0097803.1 MGP_AJ_G0036146.1 mouse_genomes_project X 147529196 147574019 + MGP_AJ_P0097803 Pfkfb1 protein_coding protein_coding MGP_AJ_T0097804.1 MGP_AJ_G0036146.1 mouse_genomes_project X 147533754 147574019 + MGP_AJ_P0097804 Pfkfb1 protein_coding protein_coding MGP_AJ_T0097805.1 MGP_AJ_G0036146.1 mouse_genomes_project X 147533884 147573998 + Pfkfb1 protein_coding retained_intron MGP_AJ_T0097806.1 MGP_AJ_G0036146.1 mouse_genomes_project X 147554030 147558400 + Pfkfb1 protein_coding processed_transcript MGP_AJ_T0097807.1 MGP_AJ_G0036146.1 mouse_genomes_project X 147559034 147572118 + Pfkfb1 protein_coding processed_transcript MGP_AJ_T0102938.1 MGP_AJ_G0040678.1 mouse_genomes_project X 33095630 33095863 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0100386.1 MGP_AJ_G0038352.1 mouse_genomes_project X 150933735 150933835 - Gm25895 snRNA snRNA MGP_AJ_T0016657.1 MGP_AJ_G0014752.1 mouse_genomes_project X 109805857 109807622 - processed_pseudogene processed_pseudogene MGP_AJ_T0096245.1 MGP_AJ_G0035722.1 mouse_genomes_project X 52095343 52121253 + MGP_AJ_P0096245 Slc9a6 protein_coding protein_coding MGP_AJ_T0096246.1 MGP_AJ_G0035722.1 mouse_genomes_project X 52095361 52150142 + MGP_AJ_P0096246 Slc9a6 protein_coding protein_coding MGP_AJ_T0096247.1 MGP_AJ_G0035722.1 mouse_genomes_project X 52095403 52149753 + MGP_AJ_P0096247 Slc9a6 protein_coding protein_coding MGP_AJ_T0096248.1 MGP_AJ_G0035722.1 mouse_genomes_project X 52144154 52149741 + Slc9a6 protein_coding retained_intron MGP_AJ_T0098857.1 MGP_AJ_G0036841.1 mouse_genomes_project X 92698966 92699102 - Gm24718 scaRNA scaRNA MGP_AJ_T0095562.1 MGP_AJ_G0035496.1 mouse_genomes_project X 2248322 2256344 - Magix protein_coding processed_transcript MGP_AJ_T0095563.1 MGP_AJ_G0035496.1 mouse_genomes_project X 2249784 2256182 - MGP_AJ_P0095563 Magix protein_coding protein_coding MGP_AJ_T0016297.1 MGP_AJ_G0014392.1 mouse_genomes_project X 36774934 36776241 - processed_pseudogene processed_pseudogene MGP_AJ_T0016598.1 MGP_AJ_G0014693.1 mouse_genomes_project X 100088373 100089151 + processed_pseudogene processed_pseudogene MGP_AJ_T0016249.1 MGP_AJ_G0014344.1 mouse_genomes_project X 13950223 13950840 + processed_pseudogene processed_pseudogene MGP_AJ_T0095524.1 MGP_AJ_G0035488.1 mouse_genomes_project X 1942583 1947344 - MGP_AJ_P0095524 Usp27x protein_coding nonsense_mediated_decay MGP_AJ_T0095525.1 MGP_AJ_G0035488.1 mouse_genomes_project X 1942583 1947344 - MGP_AJ_P0095525 Usp27x protein_coding protein_coding MGP_AJ_T0095526.1 MGP_AJ_G0035488.1 mouse_genomes_project X 1943897 1947348 - MGP_AJ_P0095526 Usp27x protein_coding protein_coding MGP_AJ_T0095917.1 MGP_AJ_G0035593.1 mouse_genomes_project X 31108395 31167778 + MGP_AJ_P0095917 Il13ra1 protein_coding protein_coding MGP_AJ_T0016304.1 MGP_AJ_G0014399.1 mouse_genomes_project X 38507260 38507432 - processed_pseudogene processed_pseudogene MGP_AJ_T0016895.1 MGP_AJ_G0014990.1 mouse_genomes_project X 162114873 162115150 + processed_pseudogene processed_pseudogene MGP_AJ_T0096319.1 MGP_AJ_G0035743.1 mouse_genomes_project X 57332049 57333508 + MGP_AJ_P0096319 Ldoc1 protein_coding protein_coding MGP_AJ_T0097719.1 MGP_AJ_G0036132.1 mouse_genomes_project X 140412112 140687640 + MGP_AJ_P0097719 Pak3 protein_coding protein_coding MGP_AJ_T0097720.1 MGP_AJ_G0036132.1 mouse_genomes_project X 140412219 140659426 + MGP_AJ_P0097720 Pak3 protein_coding protein_coding MGP_AJ_T0097721.1 MGP_AJ_G0036132.1 mouse_genomes_project X 140558098 140687640 + MGP_AJ_P0097721 Pak3 protein_coding protein_coding MGP_AJ_T0097722.1 MGP_AJ_G0036132.1 mouse_genomes_project X 140558181 140586809 + MGP_AJ_P0097722 Pak3 protein_coding protein_coding MGP_AJ_T0097723.1 MGP_AJ_G0036132.1 mouse_genomes_project X 140558199 140609480 + MGP_AJ_P0097723 Pak3 protein_coding protein_coding MGP_AJ_T0097724.1 MGP_AJ_G0036132.1 mouse_genomes_project X 140558334 140629478 + MGP_AJ_P0097724 Pak3 protein_coding protein_coding MGP_AJ_T0097725.1 MGP_AJ_G0036132.1 mouse_genomes_project X 140558387 140687640 + MGP_AJ_P0097725 Pak3 protein_coding protein_coding MGP_AJ_T0097726.1 MGP_AJ_G0036132.1 mouse_genomes_project X 140559382 140687640 + MGP_AJ_P0097726 Pak3 protein_coding protein_coding MGP_AJ_T0097727.1 MGP_AJ_G0036132.1 mouse_genomes_project X 140559382 140687640 + MGP_AJ_P0097727 Pak3 protein_coding protein_coding MGP_AJ_T0097728.1 MGP_AJ_G0036132.1 mouse_genomes_project X 140586710 140687644 + MGP_AJ_P0097728 Pak3 protein_coding protein_coding MGP_AJ_T0011223.1 MGP_AJ_G0009345.1 mouse_genomes_project X 148858822 148858930 + Mir98 miRNA miRNA MGP_AJ_T0096331.1 MGP_AJ_G0035751.1 mouse_genomes_project X 62379325 62392039 + MGP_AJ_P0096331 Slitrk2 protein_coding protein_coding MGP_AJ_T0096332.1 MGP_AJ_G0035751.1 mouse_genomes_project X 62383006 62386488 + MGP_AJ_P0096332 Slitrk2 protein_coding protein_coding MGP_AJ_T0016870.1 MGP_AJ_G0014965.1 mouse_genomes_project X 156770760 156771323 + processed_pseudogene processed_pseudogene MGP_AJ_T0016275.1 MGP_AJ_G0014370.1 mouse_genomes_project X 31302277 31302773 - processed_pseudogene processed_pseudogene MGP_AJ_T0096021.1 MGP_AJ_G0035649.1 mouse_genomes_project X 33396334 33398549 + MGP_AJ_P0096021 BC049702 protein_coding protein_coding MGP_AJ_T0011761.1 MGP_AJ_G0009883.1 mouse_genomes_project X 84143099 84143383 - Gm24812 misc_RNA misc_RNA MGP_AJ_T0097667.1 MGP_AJ_G0036111.1 mouse_genomes_project X 137263151 137359921 + MGP_AJ_P0097667 Frmpd3 protein_coding unknown_likely_coding MGP_AJ_T0097668.1 MGP_AJ_G0036111.1 mouse_genomes_project X 137290674 137317352 + MGP_AJ_P0097668 Frmpd3 protein_coding protein_coding MGP_AJ_T0097669.1 MGP_AJ_G0036111.1 mouse_genomes_project X 137305404 137317997 + MGP_AJ_P0097669 Frmpd3 protein_coding protein_coding MGP_AJ_T0096891.1 MGP_AJ_G0035876.1 mouse_genomes_project X 82237456 82240569 + MGP_AJ_P0096891 Samt3 protein_coding protein_coding MGP_AJ_T0096336.1 MGP_AJ_G0035755.1 mouse_genomes_project X 64395295 64434065 + MGP_AJ_P0096336 Fmr1 protein_coding protein_coding MGP_AJ_T0096337.1 MGP_AJ_G0035755.1 mouse_genomes_project X 64395336 64425005 + Fmr1 protein_coding retained_intron MGP_AJ_T0096338.1 MGP_AJ_G0035755.1 mouse_genomes_project X 64395336 64423021 + Fmr1 protein_coding retained_intron MGP_AJ_T0096339.1 MGP_AJ_G0035755.1 mouse_genomes_project X 64395336 64396859 + Fmr1 protein_coding processed_transcript MGP_AJ_T0096340.1 MGP_AJ_G0035755.1 mouse_genomes_project X 64395378 64434065 + MGP_AJ_P0096340 Fmr1 protein_coding protein_coding MGP_AJ_T0096341.1 MGP_AJ_G0035755.1 mouse_genomes_project X 64395556 64434065 + MGP_AJ_P0096341 Fmr1 protein_coding protein_coding MGP_AJ_T0096342.1 MGP_AJ_G0035755.1 mouse_genomes_project X 64395556 64434065 + MGP_AJ_P0096342 Fmr1 protein_coding protein_coding MGP_AJ_T0096343.1 MGP_AJ_G0035755.1 mouse_genomes_project X 64395565 64434065 + MGP_AJ_P0096343 Fmr1 protein_coding protein_coding MGP_AJ_T0096344.1 MGP_AJ_G0035755.1 mouse_genomes_project X 64395571 64434065 + MGP_AJ_P0096344 Fmr1 protein_coding protein_coding MGP_AJ_T0096345.1 MGP_AJ_G0035755.1 mouse_genomes_project X 64410927 64422318 + Fmr1 protein_coding retained_intron MGP_AJ_T0096346.1 MGP_AJ_G0035755.1 mouse_genomes_project X 64413790 64414464 + Fmr1 protein_coding retained_intron MGP_AJ_T0096347.1 MGP_AJ_G0035755.1 mouse_genomes_project X 64427976 64429455 + Fmr1 protein_coding retained_intron MGP_AJ_T0096011.1 MGP_AJ_G0035646.1 mouse_genomes_project X 33195009 33202274 + MGP_AJ_P0096011 Zbtb33 protein_coding protein_coding MGP_AJ_T0096012.1 MGP_AJ_G0035646.1 mouse_genomes_project X 33195028 33199901 + MGP_AJ_P0096012 Zbtb33 protein_coding protein_coding MGP_AJ_T0096013.1 MGP_AJ_G0035646.1 mouse_genomes_project X 33195050 33199285 + MGP_AJ_P0096013 Zbtb33 protein_coding protein_coding MGP_AJ_T0016507.1 MGP_AJ_G0014602.1 mouse_genomes_project X 85739118 85739626 - processed_pseudogene processed_pseudogene MGP_AJ_T0102963.1 MGP_AJ_G0040703.1 mouse_genomes_project X 102970841 102979574 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0016296.1 MGP_AJ_G0014391.1 mouse_genomes_project X 36729375 36729759 - processed_pseudogene processed_pseudogene MGP_AJ_T0005578.1 MGP_AJ_G0004701.1 mouse_genomes_project X 47361433 47403317 + Gm14582 antisense antisense MGP_AJ_T0011779.1 MGP_AJ_G0009901.1 mouse_genomes_project X 137575700 137576002 - Gm22025 misc_RNA misc_RNA MGP_AJ_T0016520.1 MGP_AJ_G0014615.1 mouse_genomes_project X 88476663 88477326 - processed_pseudogene processed_pseudogene MGP_AJ_T0011763.1 MGP_AJ_G0009885.1 mouse_genomes_project X 100041432 100041500 - Gm27733 misc_RNA misc_RNA MGP_AJ_T0016701.1 MGP_AJ_G0014796.1 mouse_genomes_project X 122808621 122809284 + processed_pseudogene processed_pseudogene MGP_AJ_T0016236.1 MGP_AJ_G0014331.1 mouse_genomes_project X 9925832 9926720 - processed_pseudogene processed_pseudogene MGP_AJ_T0011189.1 MGP_AJ_G0009311.1 mouse_genomes_project X 96868743 96868832 + Mir676 miRNA miRNA MGP_AJ_T0011183.1 MGP_AJ_G0009305.1 mouse_genomes_project X 75040429 75040521 - Gm23556 miRNA miRNA MGP_AJ_T0018638.1 MGP_AJ_G0015759.1 mouse_genomes_project X 69768013 69770466 + Gm14817 processed_transcript processed_transcript MGP_AJ_T0098772.1 MGP_AJ_G0036756.1 mouse_genomes_project X 72916378 72916486 - Gm26041 rRNA rRNA MGP_AJ_T0102959.1 MGP_AJ_G0040699.1 mouse_genomes_project X 88588100 88589144 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0016550.1 MGP_AJ_G0014645.1 mouse_genomes_project X 92767251 92768671 - processed_pseudogene processed_pseudogene MGP_AJ_T0096358.1 MGP_AJ_G0035760.1 mouse_genomes_project X 66150224 66153764 + MGP_AJ_P0096358 1110012L19Rik protein_coding protein_coding MGP_AJ_T0016256.1 MGP_AJ_G0014351.1 mouse_genomes_project X 15360374 15361446 - processed_pseudogene processed_pseudogene MGP_AJ_T0016843.1 MGP_AJ_G0014938.1 mouse_genomes_project X 152344347 152344977 + processed_pseudogene processed_pseudogene MGP_AJ_T0011219.1 MGP_AJ_G0009341.1 mouse_genomes_project X 144033856 144033968 + Mir448 miRNA miRNA MGP_AJ_T0016745.1 MGP_AJ_G0014840.1 mouse_genomes_project X 133930269 133930817 + processed_pseudogene processed_pseudogene MGP_AJ_T0011143.1 MGP_AJ_G0009265.1 mouse_genomes_project X 48140869 48140938 - Mir450-2 miRNA miRNA MGP_AJ_T0095833.1 MGP_AJ_G0035568.1 mouse_genomes_project X 15528966 15541215 + MGP_AJ_P0095833 Rgn protein_coding protein_coding MGP_AJ_T0016616.1 MGP_AJ_G0014711.1 mouse_genomes_project X 102251965 102252157 + processed_pseudogene processed_pseudogene MGP_AJ_T0102964.1 MGP_AJ_G0040704.1 mouse_genomes_project X 102985006 102994833 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0016733.1 MGP_AJ_G0014828.1 mouse_genomes_project X 131554740 131555373 - processed_pseudogene processed_pseudogene MGP_AJ_T0016410.1 MGP_AJ_G0014505.1 mouse_genomes_project X 66182448 66184736 - processed_pseudogene processed_pseudogene MGP_AJ_T0100326.1 MGP_AJ_G0038292.1 mouse_genomes_project X 15590001 15590174 - Gm23628 snRNA snRNA MGP_AJ_T0016546.1 MGP_AJ_G0014641.1 mouse_genomes_project X 91813637 91814620 - processed_pseudogene processed_pseudogene MGP_AJ_T0097968.1 MGP_AJ_G0036184.1 mouse_genomes_project X 152751097 152801906 - MGP_AJ_P0097968 Ptchd1 protein_coding protein_coding MGP_AJ_T0097969.1 MGP_AJ_G0036184.1 mouse_genomes_project X 152751183 152801699 - MGP_AJ_P0097969 Ptchd1 protein_coding protein_coding MGP_AJ_T0097970.1 MGP_AJ_G0036184.1 mouse_genomes_project X 152764948 152802395 - Ptchd1 protein_coding processed_transcript MGP_AJ_T0016664.1 MGP_AJ_G0014759.1 mouse_genomes_project X 111482376 111482882 + processed_pseudogene processed_pseudogene MGP_AJ_T0096557.1 MGP_AJ_G0035808.1 mouse_genomes_project X 69899810 69908308 - MGP_AJ_P0096557 Renbp protein_coding protein_coding MGP_AJ_T0096558.1 MGP_AJ_G0035808.1 mouse_genomes_project X 69899810 69908250 - MGP_AJ_P0096558 Renbp protein_coding protein_coding MGP_AJ_T0096559.1 MGP_AJ_G0035808.1 mouse_genomes_project X 69899811 69904019 - Renbp protein_coding retained_intron MGP_AJ_T0096560.1 MGP_AJ_G0035808.1 mouse_genomes_project X 69899812 69908275 - Renbp protein_coding retained_intron MGP_AJ_T0096561.1 MGP_AJ_G0035808.1 mouse_genomes_project X 69899828 69908214 - MGP_AJ_P0096561 Renbp protein_coding protein_coding MGP_AJ_T0096562.1 MGP_AJ_G0035808.1 mouse_genomes_project X 69902880 69906587 - Renbp protein_coding processed_transcript MGP_AJ_T0096563.1 MGP_AJ_G0035808.1 mouse_genomes_project X 69903884 69905549 - Renbp protein_coding retained_intron MGP_AJ_T0096564.1 MGP_AJ_G0035808.1 mouse_genomes_project X 69905707 69908199 - Renbp protein_coding retained_intron MGP_AJ_T0096565.1 MGP_AJ_G0035808.1 mouse_genomes_project X 69906599 69908203 - MGP_AJ_P0096565 Renbp protein_coding nonsense_mediated_decay MGP_AJ_T0096566.1 MGP_AJ_G0035808.1 mouse_genomes_project X 69907046 69908210 - Renbp protein_coding retained_intron MGP_AJ_T0097775.1 MGP_AJ_G0036143.1 mouse_genomes_project X 147318963 147370081 - MGP_AJ_P0097775 Tmem29 protein_coding protein_coding MGP_AJ_T0097776.1 MGP_AJ_G0036143.1 mouse_genomes_project X 147318963 147388020 - MGP_AJ_P0097776 Tmem29 protein_coding protein_coding MGP_AJ_T0097777.1 MGP_AJ_G0036143.1 mouse_genomes_project X 147319985 147388020 - Tmem29 protein_coding processed_transcript MGP_AJ_T0097778.1 MGP_AJ_G0036143.1 mouse_genomes_project X 147332089 147388024 - Tmem29 protein_coding processed_transcript MGP_AJ_T0097779.1 MGP_AJ_G0036143.1 mouse_genomes_project X 147332089 147370050 - Tmem29 protein_coding processed_transcript MGP_AJ_T0097780.1 MGP_AJ_G0036143.1 mouse_genomes_project X 147332095 147369849 - MGP_AJ_P0097780 Tmem29 protein_coding protein_coding MGP_AJ_T0097781.1 MGP_AJ_G0036143.1 mouse_genomes_project X 147332431 147388024 - Tmem29 protein_coding processed_transcript MGP_AJ_T0097782.1 MGP_AJ_G0036143.1 mouse_genomes_project X 147332617 147364466 - Tmem29 protein_coding processed_transcript MGP_AJ_T0097783.1 MGP_AJ_G0036143.1 mouse_genomes_project X 147332682 147369849 - Tmem29 protein_coding processed_transcript MGP_AJ_T0097784.1 MGP_AJ_G0036143.1 mouse_genomes_project X 147340449 147388024 - Tmem29 protein_coding retained_intron MGP_AJ_T0097785.1 MGP_AJ_G0036143.1 mouse_genomes_project X 147366092 147370107 - Tmem29 protein_coding processed_transcript MGP_AJ_T0097786.1 MGP_AJ_G0036143.1 mouse_genomes_project X 147366897 147369733 - Tmem29 protein_coding processed_transcript MGP_AJ_T0016717.1 MGP_AJ_G0014812.1 mouse_genomes_project X 128108714 128109662 - processed_pseudogene processed_pseudogene MGP_AJ_T0016337.1 MGP_AJ_G0014432.1 mouse_genomes_project X 47847840 47848252 - processed_pseudogene processed_pseudogene MGP_AJ_T0096790.1 MGP_AJ_G0035843.1 mouse_genomes_project X 71221328 71446772 - MGP_AJ_P0096790 F8 protein_coding protein_coding MGP_AJ_T0096791.1 MGP_AJ_G0035843.1 mouse_genomes_project X 71221332 71444497 - MGP_AJ_P0096791 F8 protein_coding protein_coding MGP_AJ_T0096792.1 MGP_AJ_G0035843.1 mouse_genomes_project X 71396745 71447063 - MGP_AJ_P0096792 F8 protein_coding protein_coding MGP_AJ_T0096793.1 MGP_AJ_G0035843.1 mouse_genomes_project X 71420979 71446747 - MGP_AJ_P0096793 F8 protein_coding protein_coding MGP_AJ_T0016602.1 MGP_AJ_G0014697.1 mouse_genomes_project X 100232900 100234073 - processed_pseudogene processed_pseudogene MGP_AJ_T0097042.1 MGP_AJ_G0035922.1 mouse_genomes_project X 96303246 96334771 + MGP_AJ_P0097042 Tmem28 protein_coding protein_coding MGP_AJ_T0005593.1 MGP_AJ_G0004714.1 mouse_genomes_project X 81929453 81935150 + Gm14764 antisense antisense MGP_AJ_T0016903.1 MGP_AJ_G0014998.1 mouse_genomes_project X 164328505 164329040 - processed_pseudogene processed_pseudogene MGP_AJ_T0005614.1 MGP_AJ_G0004727.1 mouse_genomes_project X 157682844 157695384 - Gm15241 antisense antisense MGP_AJ_T0097737.1 MGP_AJ_G0036135.1 mouse_genomes_project X 141185279 141241169 + MGP_AJ_P0097737 Alg13 protein_coding nonsense_mediated_decay MGP_AJ_T0097738.1 MGP_AJ_G0036135.1 mouse_genomes_project X 141185282 141191344 + MGP_AJ_P0097738 Alg13 protein_coding protein_coding MGP_AJ_T0097739.1 MGP_AJ_G0036135.1 mouse_genomes_project X 141185282 141207241 + MGP_AJ_P0097739 Alg13 protein_coding nonsense_mediated_decay MGP_AJ_T0097740.1 MGP_AJ_G0036135.1 mouse_genomes_project X 141185297 141241169 + MGP_AJ_P0097740 Alg13 protein_coding nonsense_mediated_decay MGP_AJ_T0097741.1 MGP_AJ_G0036135.1 mouse_genomes_project X 141185302 141191215 + Alg13 protein_coding processed_transcript MGP_AJ_T0097742.1 MGP_AJ_G0036135.1 mouse_genomes_project X 141185302 141241174 + MGP_AJ_P0097742 Alg13 protein_coding nonsense_mediated_decay MGP_AJ_T0097743.1 MGP_AJ_G0036135.1 mouse_genomes_project X 141185320 141192395 + MGP_AJ_P0097743 Alg13 protein_coding protein_coding MGP_AJ_T0097744.1 MGP_AJ_G0036135.1 mouse_genomes_project X 141203372 141206504 + Alg13 protein_coding processed_transcript MGP_AJ_T0097745.1 MGP_AJ_G0036135.1 mouse_genomes_project X 141203997 141209924 + Alg13 protein_coding retained_intron MGP_AJ_T0097746.1 MGP_AJ_G0036135.1 mouse_genomes_project X 141204648 141241172 + MGP_AJ_P0097746 Alg13 protein_coding unknown_likely_coding MGP_AJ_T0097747.1 MGP_AJ_G0036135.1 mouse_genomes_project X 141206507 141241174 + Alg13 protein_coding processed_transcript MGP_AJ_T0097748.1 MGP_AJ_G0036135.1 mouse_genomes_project X 141207942 141213148 + Alg13 protein_coding retained_intron MGP_AJ_T0097749.1 MGP_AJ_G0036135.1 mouse_genomes_project X 141214230 141241174 + Alg13 protein_coding processed_transcript MGP_AJ_T0097750.1 MGP_AJ_G0036135.1 mouse_genomes_project X 141223868 141236495 + Alg13 protein_coding processed_transcript MGP_AJ_T0016302.1 MGP_AJ_G0014397.1 mouse_genomes_project X 37918481 37918872 - processed_pseudogene processed_pseudogene MGP_AJ_T0100391.1 MGP_AJ_G0038357.1 mouse_genomes_project X 160386117 160386224 - Gm22746 snRNA snRNA MGP_AJ_T0016242.1 MGP_AJ_G0014337.1 mouse_genomes_project X 11560093 11561268 + processed_pseudogene processed_pseudogene MGP_AJ_T0101638.1 MGP_AJ_G0039604.1 mouse_genomes_project X 125668510 125668642 - Gm26029 snoRNA snoRNA MGP_AJ_T0097159.1 MGP_AJ_G0035948.1 mouse_genomes_project X 98046994 98116341 + MGP_AJ_P0097159 Taf1 protein_coding protein_coding MGP_AJ_T0097160.1 MGP_AJ_G0035948.1 mouse_genomes_project X 98047001 98117087 + MGP_AJ_P0097160 Taf1 protein_coding protein_coding MGP_AJ_T0097161.1 MGP_AJ_G0035948.1 mouse_genomes_project X 98047019 98116341 + MGP_AJ_P0097161 Taf1 protein_coding nonsense_mediated_decay MGP_AJ_T0097162.1 MGP_AJ_G0035948.1 mouse_genomes_project X 98047019 98063591 + MGP_AJ_P0097162 Taf1 protein_coding protein_coding MGP_AJ_T0097163.1 MGP_AJ_G0035948.1 mouse_genomes_project X 98047082 98114832 + MGP_AJ_P0097163 Taf1 protein_coding unknown_likely_coding MGP_AJ_T0097164.1 MGP_AJ_G0035948.1 mouse_genomes_project X 98070701 98116341 + Taf1 protein_coding retained_intron MGP_AJ_T0097165.1 MGP_AJ_G0035948.1 mouse_genomes_project X 98104842 98115878 + Taf1 protein_coding processed_transcript MGP_AJ_T0009383.1 MGP_AJ_G0007532.1 mouse_genomes_project X 41463523 41769036 - lincRNA lincRNA MGP_AJ_T0011136.1 MGP_AJ_G0009258.1 mouse_genomes_project X 47818319 47818410 - Mir92-2 miRNA miRNA MGP_AJ_T0098088.1 MGP_AJ_G0036211.1 mouse_genomes_project X 160013156 160046878 - Txlng protein_coding retained_intron MGP_AJ_T0098089.1 MGP_AJ_G0036211.1 mouse_genomes_project X 160013156 160063914 - MGP_AJ_P0098089 Txlng protein_coding protein_coding MGP_AJ_T0098090.1 MGP_AJ_G0036211.1 mouse_genomes_project X 160013156 160063914 - MGP_AJ_P0098090 Txlng protein_coding protein_coding MGP_AJ_T0098091.1 MGP_AJ_G0036211.1 mouse_genomes_project X 160025827 160046928 - MGP_AJ_P0098091 Txlng protein_coding protein_coding MGP_AJ_T0098092.1 MGP_AJ_G0036211.1 mouse_genomes_project X 160025828 160063914 - MGP_AJ_P0098092 Txlng protein_coding protein_coding MGP_AJ_T0098093.1 MGP_AJ_G0036211.1 mouse_genomes_project X 160062519 160063914 - Txlng protein_coding processed_transcript MGP_AJ_T0096177.1 MGP_AJ_G0035689.1 mouse_genomes_project X 45008379 45009309 - MGP_AJ_P0096177 Olfr1323 protein_coding protein_coding MGP_AJ_T0098057.1 MGP_AJ_G0036203.1 mouse_genomes_project X 157953733 157990234 + MGP_AJ_P0098057 Rs1 protein_coding protein_coding MGP_AJ_T0098058.1 MGP_AJ_G0036203.1 mouse_genomes_project X 157953900 157985424 + MGP_AJ_P0098058 Rs1 protein_coding protein_coding MGP_AJ_T0098062.1 MGP_AJ_G0036203.1 mouse_genomes_project X 157982072 157985921 + Rs1 protein_coding processed_transcript MGP_AJ_T0097391.1 MGP_AJ_G0036024.1 mouse_genomes_project X 114992690 114993751 + MGP_AJ_P0097391 Tgif2lx2 protein_coding protein_coding MGP_AJ_T0101654.1 MGP_AJ_G0039620.1 mouse_genomes_project X 148491040 148491146 - Gm24460 snoRNA snoRNA MGP_AJ_T0016529.1 MGP_AJ_G0014624.1 mouse_genomes_project X 90461006 90461508 - processed_pseudogene processed_pseudogene MGP_AJ_T0011124.1 MGP_AJ_G0009246.1 mouse_genomes_project X 18964143 18964245 + Gm25299 miRNA miRNA MGP_AJ_T0096324.1 MGP_AJ_G0035747.1 mouse_genomes_project X 59870377 59875608 + MGP_AJ_P0096324 3830417A13Rik protein_coding protein_coding MGP_AJ_T0096325.1 MGP_AJ_G0035747.1 mouse_genomes_project X 59871177 59874337 + MGP_AJ_P0096325 3830417A13Rik protein_coding protein_coding MGP_AJ_T0016460.1 MGP_AJ_G0014555.1 mouse_genomes_project X 74783475 74792371 - processed_pseudogene processed_pseudogene MGP_AJ_T0016685.1 MGP_AJ_G0014780.1 mouse_genomes_project X 115250549 115253796 - processed_pseudogene processed_pseudogene MGP_AJ_T0016801.1 MGP_AJ_G0014896.1 mouse_genomes_project X 142533488 142534436 + processed_pseudogene processed_pseudogene MGP_AJ_T0097893.1 MGP_AJ_G0036158.1 mouse_genomes_project X 148961221 148979450 + MGP_AJ_P0097893 Smc1a protein_coding nonsense_mediated_decay MGP_AJ_T0097894.1 MGP_AJ_G0036158.1 mouse_genomes_project X 148961221 149006218 + MGP_AJ_P0097894 Smc1a protein_coding protein_coding MGP_AJ_T0097895.1 MGP_AJ_G0036158.1 mouse_genomes_project X 148979684 148981296 + Smc1a protein_coding retained_intron MGP_AJ_T0097896.1 MGP_AJ_G0036158.1 mouse_genomes_project X 148990164 148991472 + Smc1a protein_coding retained_intron MGP_AJ_T0097897.1 MGP_AJ_G0036158.1 mouse_genomes_project X 149001990 149003032 + Smc1a protein_coding retained_intron MGP_AJ_T0097898.1 MGP_AJ_G0036158.1 mouse_genomes_project X 149002598 149003304 + Smc1a protein_coding retained_intron MGP_AJ_T0095812.1 MGP_AJ_G0035562.1 mouse_genomes_project X 13170897 13304462 + MGP_AJ_P0095812 Kdm6a protein_coding protein_coding MGP_AJ_T0095813.1 MGP_AJ_G0035562.1 mouse_genomes_project X 13170897 13304462 + MGP_AJ_P0095813 Kdm6a protein_coding protein_coding MGP_AJ_T0095814.1 MGP_AJ_G0035562.1 mouse_genomes_project X 13170970 13283495 + Kdm6a protein_coding retained_intron MGP_AJ_T0095815.1 MGP_AJ_G0035562.1 mouse_genomes_project X 13171328 13303181 + MGP_AJ_P0095815 Kdm6a protein_coding unknown_likely_coding MGP_AJ_T0095816.1 MGP_AJ_G0035562.1 mouse_genomes_project X 13299038 13302786 + Kdm6a protein_coding retained_intron MGP_AJ_T0095776.1 MGP_AJ_G0035549.1 mouse_genomes_project X 8219823 8235521 + MGP_AJ_P0095776 Ddx3x protein_coding protein_coding MGP_AJ_T0095777.1 MGP_AJ_G0035549.1 mouse_genomes_project X 8219875 8233761 + Ddx3x protein_coding processed_transcript MGP_AJ_T0095778.1 MGP_AJ_G0035549.1 mouse_genomes_project X 8219885 8229611 + Ddx3x protein_coding retained_intron MGP_AJ_T0095779.1 MGP_AJ_G0035549.1 mouse_genomes_project X 8229022 8230591 + Ddx3x protein_coding retained_intron MGP_AJ_T0095780.1 MGP_AJ_G0035549.1 mouse_genomes_project X 8229523 8231654 + Ddx3x protein_coding retained_intron MGP_AJ_T0016810.1 MGP_AJ_G0014905.1 mouse_genomes_project X 143467232 143468440 - processed_pseudogene processed_pseudogene MGP_AJ_T0097311.1 MGP_AJ_G0035994.1 mouse_genomes_project X 104329678 104350690 + MGP_AJ_P0097311 Tbx22 protein_coding protein_coding MGP_AJ_T0097312.1 MGP_AJ_G0035994.1 mouse_genomes_project X 104329678 104342888 + MGP_AJ_P0097312 Tbx22 protein_coding nonsense_mediated_decay MGP_AJ_T0097313.1 MGP_AJ_G0035994.1 mouse_genomes_project X 104338226 104348612 + MGP_AJ_P0097313 Tbx22 protein_coding protein_coding MGP_AJ_T0097314.1 MGP_AJ_G0035994.1 mouse_genomes_project X 104340677 104350693 + MGP_AJ_P0097314 Tbx22 protein_coding protein_coding MGP_AJ_T0097315.1 MGP_AJ_G0035994.1 mouse_genomes_project X 104340729 104349337 + MGP_AJ_P0097315 Tbx22 protein_coding protein_coding MGP_AJ_T0016273.1 MGP_AJ_G0014368.1 mouse_genomes_project X 31210763 31211138 - processed_pseudogene processed_pseudogene MGP_AJ_T0011197.1 MGP_AJ_G0009319.1 mouse_genomes_project X 101919446 101919534 - Mir384 miRNA miRNA MGP_AJ_T0016281.1 MGP_AJ_G0014376.1 mouse_genomes_project X 33930712 33932359 - processed_pseudogene processed_pseudogene MGP_AJ_T0097931.1 MGP_AJ_G0036168.1 mouse_genomes_project X 150107283 150121326 + MGP_AJ_P0097931 Foxr2 protein_coding protein_coding MGP_AJ_T0097932.1 MGP_AJ_G0036168.1 mouse_genomes_project X 150115361 150121326 + MGP_AJ_P0097932 Foxr2 protein_coding protein_coding MGP_AJ_T0095507.1 MGP_AJ_G0035480.1 mouse_genomes_project X 671432 673633 - MGP_AJ_P0095507 AU022751 protein_coding protein_coding MGP_AJ_T0095508.1 MGP_AJ_G0035480.1 mouse_genomes_project X 671432 673633 - MGP_AJ_P0095508 AU022751 protein_coding protein_coding MGP_AJ_T0011201.1 MGP_AJ_G0009323.1 mouse_genomes_project X 112679387 112679475 + Gm24683 miRNA miRNA MGP_AJ_T0016454.1 MGP_AJ_G0014549.1 mouse_genomes_project X 74152787 74153033 - processed_pseudogene processed_pseudogene MGP_AJ_T0011158.1 MGP_AJ_G0009280.1 mouse_genomes_project X 62540736 62540803 - Mir471 miRNA miRNA MGP_AJ_T0016739.1 MGP_AJ_G0014834.1 mouse_genomes_project X 133137196 133137813 - processed_pseudogene processed_pseudogene MGP_AJ_T0016496.1 MGP_AJ_G0014591.1 mouse_genomes_project X 84863798 84865121 - processed_pseudogene processed_pseudogene MGP_AJ_T0016254.1 MGP_AJ_G0014349.1 mouse_genomes_project X 14902764 14903227 + processed_pseudogene processed_pseudogene MGP_AJ_T0097217.1 MGP_AJ_G0035968.1 mouse_genomes_project X 100287253 100407691 - MGP_AJ_P0097217 Slc16a2 protein_coding protein_coding MGP_AJ_T0097218.1 MGP_AJ_G0035968.1 mouse_genomes_project X 100289707 100296311 - Slc16a2 protein_coding retained_intron MGP_AJ_T0097219.1 MGP_AJ_G0035968.1 mouse_genomes_project X 100296240 100326012 - Slc16a2 protein_coding processed_transcript MGP_AJ_T0096203.1 MGP_AJ_G0035699.1 mouse_genomes_project X 47337641 47682012 - MGP_AJ_P0096203 Gpc3 protein_coding protein_coding MGP_AJ_T0096204.1 MGP_AJ_G0035699.1 mouse_genomes_project X 47451693 47682041 - MGP_AJ_P0096204 Gpc3 protein_coding protein_coding MGP_AJ_T0011772.1 MGP_AJ_G0009894.1 mouse_genomes_project X 125806978 125807256 - Gm22225 misc_RNA misc_RNA MGP_AJ_T0016735.1 MGP_AJ_G0014830.1 mouse_genomes_project X 132337063 132337806 + processed_pseudogene processed_pseudogene MGP_AJ_T0100389.1 MGP_AJ_G0038355.1 mouse_genomes_project X 159351449 159351553 + Gm23794 snRNA snRNA MGP_AJ_T0016875.1 MGP_AJ_G0014970.1 mouse_genomes_project X 157534956 157536507 - processed_pseudogene processed_pseudogene MGP_AJ_T0096163.1 MGP_AJ_G0035684.1 mouse_genomes_project X 44458117 44490595 + MGP_AJ_P0096163 Arhgap36 protein_coding protein_coding MGP_AJ_T0096164.1 MGP_AJ_G0035684.1 mouse_genomes_project X 44464630 44494330 + MGP_AJ_P0096164 Arhgap36 protein_coding protein_coding MGP_AJ_T0096165.1 MGP_AJ_G0035684.1 mouse_genomes_project X 44464757 44494328 + MGP_AJ_P0096165 Arhgap36 protein_coding protein_coding MGP_AJ_T0096166.1 MGP_AJ_G0035684.1 mouse_genomes_project X 44478812 44494328 + MGP_AJ_P0096166 Arhgap36 protein_coding unknown_likely_coding MGP_AJ_T0096167.1 MGP_AJ_G0035684.1 mouse_genomes_project X 44479379 44489000 + Arhgap36 protein_coding processed_transcript MGP_AJ_T0096168.1 MGP_AJ_G0035684.1 mouse_genomes_project X 44487626 44489205 + Arhgap36 protein_coding processed_transcript MGP_AJ_T0098779.1 MGP_AJ_G0036763.1 mouse_genomes_project X 152710451 152710570 + n-R5s16 rRNA rRNA MGP_AJ_T0018604.1 MGP_AJ_G0015748.1 mouse_genomes_project X 2718683 2728105 + Gm6787 processed_transcript processed_transcript MGP_AJ_T0011164.1 MGP_AJ_G0009286.1 mouse_genomes_project X 62558438 62558515 - Mir871 miRNA miRNA MGP_AJ_T0016416.1 MGP_AJ_G0014511.1 mouse_genomes_project X 66461941 66462317 - processed_pseudogene processed_pseudogene MGP_AJ_T0011768.1 MGP_AJ_G0009890.1 mouse_genomes_project X 100195611 100195738 + Gm27285 misc_RNA misc_RNA MGP_AJ_T0016595.1 MGP_AJ_G0014690.1 mouse_genomes_project X 99915523 99915947 + processed_pseudogene processed_pseudogene MGP_AJ_T0016727.1 MGP_AJ_G0014822.1 mouse_genomes_project X 131152633 131152998 + processed_pseudogene processed_pseudogene MGP_AJ_T0016265.1 MGP_AJ_G0014360.1 mouse_genomes_project X 17173895 17174249 - processed_pseudogene processed_pseudogene MGP_AJ_T0011166.1 MGP_AJ_G0009288.1 mouse_genomes_project X 62570736 62570794 - Mir465d miRNA miRNA MGP_AJ_T0016444.1 MGP_AJ_G0014539.1 mouse_genomes_project X 72501377 72501681 + processed_pseudogene processed_pseudogene MGP_AJ_T0096298.1 MGP_AJ_G0035736.1 mouse_genomes_project X 54627486 54701356 - MGP_AJ_P0096298 Fgf13 protein_coding protein_coding MGP_AJ_T0096299.1 MGP_AJ_G0035736.1 mouse_genomes_project X 54627486 54735112 - MGP_AJ_P0096299 Fgf13 protein_coding protein_coding MGP_AJ_T0096300.1 MGP_AJ_G0035736.1 mouse_genomes_project X 54627486 55135002 - MGP_AJ_P0096300 Fgf13 protein_coding protein_coding MGP_AJ_T0096301.1 MGP_AJ_G0035736.1 mouse_genomes_project X 54628773 54700173 - Fgf13 protein_coding processed_transcript MGP_AJ_T0096302.1 MGP_AJ_G0035736.1 mouse_genomes_project X 54698847 54700121 - Fgf13 protein_coding processed_transcript MGP_AJ_T0096303.1 MGP_AJ_G0035736.1 mouse_genomes_project X 54698850 55134403 - MGP_AJ_P0096303 Fgf13 protein_coding protein_coding MGP_AJ_T0096304.1 MGP_AJ_G0035736.1 mouse_genomes_project X 54822139 55135002 - MGP_AJ_P0096304 Fgf13 protein_coding protein_coding MGP_AJ_T0096305.1 MGP_AJ_G0035736.1 mouse_genomes_project X 54822216 55134752 - MGP_AJ_P0096305 Fgf13 protein_coding protein_coding MGP_AJ_T0096306.1 MGP_AJ_G0035736.1 mouse_genomes_project X 55133744 55134979 - Fgf13 protein_coding retained_intron MGP_AJ_T0098012.1 MGP_AJ_G0036195.1 mouse_genomes_project X 156590186 156679956 + MGP_AJ_P0098012 Map7d2 protein_coding protein_coding MGP_AJ_T0098013.1 MGP_AJ_G0036195.1 mouse_genomes_project X 156621341 156672011 + MGP_AJ_P0098013 Map7d2 protein_coding protein_coding MGP_AJ_T0098014.1 MGP_AJ_G0036195.1 mouse_genomes_project X 156635584 156667885 + MGP_AJ_P0098014 Map7d2 protein_coding protein_coding MGP_AJ_T0098015.1 MGP_AJ_G0036195.1 mouse_genomes_project X 156635596 156646524 + MGP_AJ_P0098015 Map7d2 protein_coding protein_coding MGP_AJ_T0096243.1 MGP_AJ_G0035720.1 mouse_genomes_project X 52027544 52033277 - MGP_AJ_P0096243 Gm648 protein_coding protein_coding MGP_AJ_T0102937.1 MGP_AJ_G0040677.1 mouse_genomes_project X 32943558 32948729 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0097527.1 MGP_AJ_G0036067.1 mouse_genomes_project X 132479033 132498061 + Gprasp1 protein_coding processed_transcript MGP_AJ_T0097529.1 MGP_AJ_G0036067.1 mouse_genomes_project X 132479033 132540859 + MGP_AJ_P0097529 Gprasp1 protein_coding protein_coding MGP_AJ_T0097530.1 MGP_AJ_G0036067.1 mouse_genomes_project X 132479033 132540859 + MGP_AJ_P0097530 Gprasp1 protein_coding protein_coding MGP_AJ_T0097531.1 MGP_AJ_G0036067.1 mouse_genomes_project X 132479033 132540859 + MGP_AJ_P0097531 Gprasp1 protein_coding protein_coding MGP_AJ_T0097532.1 MGP_AJ_G0036067.1 mouse_genomes_project X 132479035 132515465 + Gprasp1 protein_coding processed_transcript MGP_AJ_T0097544.1 MGP_AJ_G0036067.1 mouse_genomes_project X 132535207 132540851 + MGP_AJ_P0097544 Gprasp1 protein_coding protein_coding MGP_AJ_T0096171.1 MGP_AJ_G0035687.1 mouse_genomes_project X 44779048 44784766 - MGP_AJ_P0096171 Igsf1 protein_coding protein_coding MGP_AJ_T0096172.1 MGP_AJ_G0035687.1 mouse_genomes_project X 44779048 44794163 - MGP_AJ_P0096172 Igsf1 protein_coding protein_coding MGP_AJ_T0096173.1 MGP_AJ_G0035687.1 mouse_genomes_project X 44782864 44791779 - MGP_AJ_P0096173 Igsf1 protein_coding protein_coding MGP_AJ_T0096174.1 MGP_AJ_G0035687.1 mouse_genomes_project X 44789380 44794163 - MGP_AJ_P0096174 Igsf1 protein_coding protein_coding MGP_AJ_T0096175.1 MGP_AJ_G0035687.1 mouse_genomes_project X 44791359 44794149 - Igsf1 protein_coding processed_transcript MGP_AJ_T0101653.1 MGP_AJ_G0039619.1 mouse_genomes_project X 147728629 147728757 - Gm24907 snoRNA snoRNA MGP_AJ_T0011112.1 MGP_AJ_G0009234.1 mouse_genomes_project X 1803350 1803459 - Mir501 miRNA miRNA MGP_AJ_T0016440.1 MGP_AJ_G0014535.1 mouse_genomes_project X 71539484 71539776 - processed_pseudogene processed_pseudogene MGP_AJ_T0005612.1 MGP_AJ_G0004726.1 mouse_genomes_project X 154970765 155007002 - Gm15169 antisense antisense MGP_AJ_T0005613.1 MGP_AJ_G0004726.1 mouse_genomes_project X 154994590 155006995 - Gm15169 antisense antisense MGP_AJ_T0096407.1 MGP_AJ_G0035771.1 mouse_genomes_project X 67887141 67892346 + MGP_AJ_P0096407 Prrg3 protein_coding protein_coding MGP_AJ_T0096408.1 MGP_AJ_G0035771.1 mouse_genomes_project X 67887142 67895789 + MGP_AJ_P0096408 Prrg3 protein_coding protein_coding MGP_AJ_T0096409.1 MGP_AJ_G0035771.1 mouse_genomes_project X 67887499 67898407 + MGP_AJ_P0096409 Prrg3 protein_coding protein_coding MGP_AJ_T0016228.1 MGP_AJ_G0014323.1 mouse_genomes_project X 7872108 7873365 + processed_pseudogene processed_pseudogene MGP_AJ_T0096797.1 MGP_AJ_G0035845.1 mouse_genomes_project X 71469729 71481446 - MGP_AJ_P0096797 Cmc4 protein_coding protein_coding MGP_AJ_T0096798.1 MGP_AJ_G0035845.1 mouse_genomes_project X 71469909 71481465 - MGP_AJ_P0096798 Cmc4 protein_coding protein_coding MGP_AJ_T0096799.1 MGP_AJ_G0035845.1 mouse_genomes_project X 71469953 71474795 - MGP_AJ_P0096799 Cmc4 protein_coding protein_coding MGP_AJ_T0095899.1 MGP_AJ_G0035588.1 mouse_genomes_project X 18205997 18272379 - MGP_AJ_P0095899 Klhl13 protein_coding protein_coding MGP_AJ_T0095900.1 MGP_AJ_G0035588.1 mouse_genomes_project X 18206005 18273281 - MGP_AJ_P0095900 Klhl13 protein_coding protein_coding MGP_AJ_T0095901.1 MGP_AJ_G0035588.1 mouse_genomes_project X 18206006 18304694 - MGP_AJ_P0095901 Klhl13 protein_coding protein_coding MGP_AJ_T0095902.1 MGP_AJ_G0035588.1 mouse_genomes_project X 18206006 18254469 - MGP_AJ_P0095902 Klhl13 protein_coding protein_coding MGP_AJ_T0095903.1 MGP_AJ_G0035588.1 mouse_genomes_project X 18222953 18284211 - Klhl13 protein_coding processed_transcript MGP_AJ_T0016264.1 MGP_AJ_G0014359.1 mouse_genomes_project X 16634216 16634597 - processed_pseudogene processed_pseudogene MGP_AJ_T0095802.1 MGP_AJ_G0035557.1 mouse_genomes_project X 11647103 11778621 - MGP_AJ_P0095802 Maob protein_coding protein_coding MGP_AJ_T0095803.1 MGP_AJ_G0035557.1 mouse_genomes_project X 11647860 11778530 - MGP_AJ_P0095803 Maob protein_coding nonsense_mediated_decay MGP_AJ_T0095804.1 MGP_AJ_G0035557.1 mouse_genomes_project X 11659624 11778530 - MGP_AJ_P0095804 Maob protein_coding nonsense_mediated_decay MGP_AJ_T0095805.1 MGP_AJ_G0035557.1 mouse_genomes_project X 11691825 11778575 - MGP_AJ_P0095805 Maob protein_coding nonsense_mediated_decay MGP_AJ_T0016308.1 MGP_AJ_G0014403.1 mouse_genomes_project X 39330700 39331148 - processed_pseudogene processed_pseudogene MGP_AJ_T0016730.1 MGP_AJ_G0014825.1 mouse_genomes_project X 131481079 131481985 - processed_pseudogene processed_pseudogene MGP_AJ_T0100324.1 MGP_AJ_G0038290.1 mouse_genomes_project X 14376706 14376813 + Gm22783 snRNA snRNA MGP_AJ_T0095699.1 MGP_AJ_G0035522.1 mouse_genomes_project X 2877287 2891136 - MGP_AJ_P0095699 Ftsj1 protein_coding protein_coding MGP_AJ_T0095700.1 MGP_AJ_G0035522.1 mouse_genomes_project X 2879039 2891040 - MGP_AJ_P0095700 Ftsj1 protein_coding protein_coding MGP_AJ_T0095701.1 MGP_AJ_G0035522.1 mouse_genomes_project X 2879039 2891125 - MGP_AJ_P0095701 Ftsj1 protein_coding protein_coding MGP_AJ_T0095702.1 MGP_AJ_G0035522.1 mouse_genomes_project X 2883317 2890938 - Ftsj1 protein_coding retained_intron MGP_AJ_T0095703.1 MGP_AJ_G0035522.1 mouse_genomes_project X 2883614 2885039 - MGP_AJ_P0095703 Ftsj1 protein_coding protein_coding MGP_AJ_T0095704.1 MGP_AJ_G0035522.1 mouse_genomes_project X 2883645 2884505 - Ftsj1 protein_coding processed_transcript MGP_AJ_T0095705.1 MGP_AJ_G0035522.1 mouse_genomes_project X 2887204 2891093 - Ftsj1 protein_coding retained_intron MGP_AJ_T0016225.1 MGP_AJ_G0014320.1 mouse_genomes_project X 7578705 7579065 + processed_pseudogene processed_pseudogene MGP_AJ_T0016211.1 MGP_AJ_G0014306.1 mouse_genomes_project X 3798863 3799524 + processed_pseudogene processed_pseudogene MGP_AJ_T0097976.1 MGP_AJ_G0036187.1 mouse_genomes_project X 154650936 154700420 - MGP_AJ_P0097976 Sms protein_coding protein_coding MGP_AJ_T0097977.1 MGP_AJ_G0036187.1 mouse_genomes_project X 154663223 154668294 - Sms protein_coding retained_intron MGP_AJ_T0097978.1 MGP_AJ_G0036187.1 mouse_genomes_project X 154666306 154700177 - Sms protein_coding retained_intron MGP_AJ_T0097979.1 MGP_AJ_G0036187.1 mouse_genomes_project X 154673286 154699505 - MGP_AJ_P0097979 Sms protein_coding protein_coding MGP_AJ_T0096787.1 MGP_AJ_G0035842.1 mouse_genomes_project X 71189459 71212368 - MGP_AJ_P0096787 Smim9 protein_coding protein_coding MGP_AJ_T0096788.1 MGP_AJ_G0035842.1 mouse_genomes_project X 71189637 71210235 - MGP_AJ_P0096788 Smim9 protein_coding protein_coding MGP_AJ_T0096789.1 MGP_AJ_G0035842.1 mouse_genomes_project X 71194322 71212385 - Smim9 protein_coding processed_transcript MGP_AJ_T0097678.1 MGP_AJ_G0036114.1 mouse_genomes_project X 137599139 137615952 + MGP_AJ_P0097678 Mid2 protein_coding protein_coding MGP_AJ_T0097679.1 MGP_AJ_G0036114.1 mouse_genomes_project X 137600977 137711208 + MGP_AJ_P0097679 Mid2 protein_coding protein_coding MGP_AJ_T0097680.1 MGP_AJ_G0036114.1 mouse_genomes_project X 137601066 137707488 + MGP_AJ_P0097680 Mid2 protein_coding protein_coding MGP_AJ_T0097681.1 MGP_AJ_G0036114.1 mouse_genomes_project X 137615271 137711208 + MGP_AJ_P0097681 Mid2 protein_coding protein_coding MGP_AJ_T0097682.1 MGP_AJ_G0036114.1 mouse_genomes_project X 137692580 137695723 + Mid2 protein_coding retained_intron MGP_AJ_T0097688.1 MGP_AJ_G0036118.1 mouse_genomes_project X 137899461 137997561 + MGP_AJ_P0097688 Atg4a protein_coding protein_coding MGP_AJ_T0097689.1 MGP_AJ_G0036118.1 mouse_genomes_project X 137899504 137935942 + Atg4a protein_coding processed_transcript MGP_AJ_T0097690.1 MGP_AJ_G0036118.1 mouse_genomes_project X 137995385 137996746 + Atg4a protein_coding retained_intron MGP_AJ_T0016386.1 MGP_AJ_G0014481.1 mouse_genomes_project X 59063131 59063510 - processed_pseudogene processed_pseudogene MGP_AJ_T0097216.1 MGP_AJ_G0035967.1 mouse_genomes_project X 100219536 100220621 + MGP_AJ_P0097216 Zcchc13 protein_coding protein_coding MGP_AJ_T0096268.1 MGP_AJ_G0035727.1 mouse_genomes_project X 52567985 52571609 + MGP_AJ_P0096268 Htatsf1 protein_coding protein_coding MGP_AJ_T0096269.1 MGP_AJ_G0035727.1 mouse_genomes_project X 52568017 52583118 + MGP_AJ_P0096269 Htatsf1 protein_coding protein_coding MGP_AJ_T0096270.1 MGP_AJ_G0035727.1 mouse_genomes_project X 52568300 52571607 + Htatsf1 protein_coding retained_intron MGP_AJ_T0095935.1 MGP_AJ_G0035601.1 mouse_genomes_project X 31784466 31785741 + protein_coding retained_intron MGP_AJ_T0097666.1 MGP_AJ_G0036110.1 mouse_genomes_project X 136975690 137020262 + MGP_AJ_P0097666 Pih1h3b protein_coding protein_coding MGP_AJ_T0016266.1 MGP_AJ_G0014361.1 mouse_genomes_project X 17194805 17196774 - processed_pseudogene processed_pseudogene MGP_AJ_T0101643.1 MGP_AJ_G0039609.1 mouse_genomes_project X 132005929 132006043 - Gm25868 snoRNA snoRNA MGP_AJ_T0096476.1 MGP_AJ_G0035797.1 mouse_genomes_project X 69655190 69687417 - MGP_AJ_P0096476 Bcap31 protein_coding protein_coding MGP_AJ_T0016394.1 MGP_AJ_G0014489.1 mouse_genomes_project X 62501706 62502899 + processed_pseudogene processed_pseudogene MGP_AJ_T0096183.1 MGP_AJ_G0035692.1 mouse_genomes_project X 45920057 45967926 - MGP_AJ_P0096183 Frmd7 protein_coding protein_coding MGP_AJ_T0096184.1 MGP_AJ_G0035692.1 mouse_genomes_project X 45920057 45967926 - MGP_AJ_P0096184 Frmd7 protein_coding nonsense_mediated_decay MGP_AJ_T0018627.1 MGP_AJ_G0015756.1 mouse_genomes_project X 48147611 48149756 - C430049B03Rik processed_transcript processed_transcript MGP_AJ_T0018628.1 MGP_AJ_G0015756.1 mouse_genomes_project X 48147772 48149726 - C430049B03Rik processed_transcript processed_transcript MGP_AJ_T0018629.1 MGP_AJ_G0015756.1 mouse_genomes_project X 48148335 48149754 - C430049B03Rik processed_transcript processed_transcript MGP_AJ_T0018630.1 MGP_AJ_G0015756.1 mouse_genomes_project X 48148758 48149756 - C430049B03Rik processed_transcript processed_transcript MGP_AJ_T0095965.1 MGP_AJ_G0035615.1 mouse_genomes_project X 32270328 32520536 + MGP_AJ_P0095965 Rhox2e protein_coding protein_coding MGP_AJ_T0095967.1 MGP_AJ_G0035615.1 mouse_genomes_project X 32270350 32520536 + MGP_AJ_P0095967 Rhox2e protein_coding protein_coding MGP_AJ_T0005607.1 MGP_AJ_G0004724.1 mouse_genomes_project X 148236716 148289960 - A230072E10Rik antisense antisense MGP_AJ_T0005608.1 MGP_AJ_G0004724.1 mouse_genomes_project X 148237966 148244033 - A230072E10Rik antisense antisense MGP_AJ_T0005609.1 MGP_AJ_G0004724.1 mouse_genomes_project X 148237966 148255869 - A230072E10Rik antisense antisense MGP_AJ_T0005610.1 MGP_AJ_G0004724.1 mouse_genomes_project X 148257796 148286993 - A230072E10Rik antisense antisense MGP_AJ_T0011786.1 MGP_AJ_G0009908.1 mouse_genomes_project X 166625790 166625959 + Gm27980 misc_RNA misc_RNA MGP_AJ_T0011209.1 MGP_AJ_G0009331.1 mouse_genomes_project X 139653962 139654060 + Mir652 miRNA miRNA MGP_AJ_T0095718.1 MGP_AJ_G0035532.1 mouse_genomes_project X 4054550 4116952 + MGP_AJ_P0095718 protein_coding protein_coding MGP_AJ_T0096860.1 MGP_AJ_G0035869.1 mouse_genomes_project X 77575290 77608313 - MGP_AJ_P0096860 4930595M18Rik protein_coding protein_coding MGP_AJ_T0002481.1 MGP_AJ_G0002390.1 mouse_genomes_project X 131361762 131364104 - TEC TEC MGP_AJ_T0097920.1 MGP_AJ_G0036164.1 mouse_genomes_project X 149587100 149760515 - MGP_AJ_P0097920 Shroom2 protein_coding protein_coding MGP_AJ_T0097921.1 MGP_AJ_G0036164.1 mouse_genomes_project X 149587583 149621853 - Shroom2 protein_coding processed_transcript MGP_AJ_T0097922.1 MGP_AJ_G0036164.1 mouse_genomes_project X 149587583 149760519 - MGP_AJ_P0097922 Shroom2 protein_coding protein_coding MGP_AJ_T0097923.1 MGP_AJ_G0036164.1 mouse_genomes_project X 149590119 149650649 - Shroom2 protein_coding processed_transcript MGP_AJ_T0097924.1 MGP_AJ_G0036164.1 mouse_genomes_project X 149597658 149621234 - Shroom2 protein_coding processed_transcript MGP_AJ_T0097925.1 MGP_AJ_G0036164.1 mouse_genomes_project X 149597867 149621420 - Shroom2 protein_coding processed_transcript MGP_AJ_T0016818.1 MGP_AJ_G0014913.1 mouse_genomes_project X 147631646 147632241 - processed_pseudogene processed_pseudogene MGP_AJ_T0101664.1 MGP_AJ_G0039630.1 mouse_genomes_project X 167029127 167029246 - Gm25651 snoRNA snoRNA MGP_AJ_T0016794.1 MGP_AJ_G0014889.1 mouse_genomes_project X 141371828 141373198 + processed_pseudogene processed_pseudogene MGP_AJ_T0009449.1 MGP_AJ_G0007575.1 mouse_genomes_project X 164156269 164163050 - Gm15230 lincRNA lincRNA MGP_AJ_T0016485.1 MGP_AJ_G0014580.1 mouse_genomes_project X 81983846 81984327 - processed_pseudogene processed_pseudogene MGP_AJ_T0016561.1 MGP_AJ_G0014656.1 mouse_genomes_project X 95015435 95015921 - processed_pseudogene processed_pseudogene MGP_AJ_T0016784.1 MGP_AJ_G0014879.1 mouse_genomes_project X 139330779 139330989 + processed_pseudogene processed_pseudogene MGP_AJ_T0095994.1 MGP_AJ_G0035635.1 mouse_genomes_project X 32735845 32740000 - MGP_AJ_P0095994 Rhox2a protein_coding protein_coding MGP_AJ_T0016656.1 MGP_AJ_G0014751.1 mouse_genomes_project X 109611502 109614076 - processed_pseudogene processed_pseudogene MGP_AJ_T0016188.1 MGP_AJ_G0014283.1 mouse_genomes_project X 205479 207143 - processed_pseudogene processed_pseudogene MGP_AJ_T0098179.1 MGP_AJ_G0036233.1 mouse_genomes_project X 163661977 163713109 - MGP_AJ_P0098179 Ofd1 protein_coding protein_coding MGP_AJ_T0011140.1 MGP_AJ_G0009262.1 mouse_genomes_project X 47818984 47819049 - Mir106a miRNA miRNA MGP_AJ_T0016443.1 MGP_AJ_G0014538.1 mouse_genomes_project X 72444265 72445037 - processed_pseudogene processed_pseudogene MGP_AJ_T0016278.1 MGP_AJ_G0014373.1 mouse_genomes_project X 32031434 32038232 - processed_pseudogene processed_pseudogene MGP_AJ_T0009436.1 MGP_AJ_G0007568.1 mouse_genomes_project X 148121763 148123880 + Gm15138 lincRNA lincRNA MGP_AJ_T0097212.1 MGP_AJ_G0035963.1 mouse_genomes_project X 99887407 99909151 + MGP_AJ_P0097212 Cdx4 protein_coding protein_coding MGP_AJ_T0011203.1 MGP_AJ_G0009325.1 mouse_genomes_project X 130647675 130647757 + Mir3112 miRNA miRNA MGP_AJ_T0095798.1 MGP_AJ_G0035554.1 mouse_genomes_project X 11478157 11478978 + MGP_AJ_P0095798 Cypt1 protein_coding protein_coding MGP_AJ_T0095799.1 MGP_AJ_G0035554.1 mouse_genomes_project X 11478160 11478977 + MGP_AJ_P0095799 Cypt1 protein_coding protein_coding MGP_AJ_T0016795.1 MGP_AJ_G0014890.1 mouse_genomes_project X 141429749 141431147 - processed_pseudogene processed_pseudogene MGP_AJ_T0102945.1 MGP_AJ_G0040685.1 mouse_genomes_project X 70933047 70946806 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0016839.1 MGP_AJ_G0014934.1 mouse_genomes_project X 152098504 152102635 - processed_pseudogene processed_pseudogene MGP_AJ_T0016475.1 MGP_AJ_G0014570.1 mouse_genomes_project X 78550414 78551564 + processed_pseudogene processed_pseudogene MGP_AJ_T0016393.1 MGP_AJ_G0014488.1 mouse_genomes_project X 61759828 61760086 + processed_pseudogene processed_pseudogene MGP_AJ_T0016193.1 MGP_AJ_G0014288.1 mouse_genomes_project X 572220 572460 + processed_pseudogene processed_pseudogene MGP_AJ_T0095591.1 MGP_AJ_G0035501.1 mouse_genomes_project X 2341916 2345427 + Tfe3 protein_coding retained_intron MGP_AJ_T0095592.1 MGP_AJ_G0035501.1 mouse_genomes_project X 2341942 2346123 + Tfe3 protein_coding processed_transcript MGP_AJ_T0095593.1 MGP_AJ_G0035501.1 mouse_genomes_project X 2342014 2354744 + MGP_AJ_P0095593 Tfe3 protein_coding protein_coding MGP_AJ_T0095594.1 MGP_AJ_G0035501.1 mouse_genomes_project X 2342020 2354741 + MGP_AJ_P0095594 Tfe3 protein_coding protein_coding MGP_AJ_T0095595.1 MGP_AJ_G0035501.1 mouse_genomes_project X 2342032 2354743 + MGP_AJ_P0095595 Tfe3 protein_coding protein_coding MGP_AJ_T0095596.1 MGP_AJ_G0035501.1 mouse_genomes_project X 2342051 2354741 + MGP_AJ_P0095596 Tfe3 protein_coding protein_coding MGP_AJ_T0095597.1 MGP_AJ_G0035501.1 mouse_genomes_project X 2342053 2354743 + Tfe3 protein_coding retained_intron MGP_AJ_T0095598.1 MGP_AJ_G0035501.1 mouse_genomes_project X 2342123 2354744 + MGP_AJ_P0095598 Tfe3 protein_coding nonsense_mediated_decay MGP_AJ_T0095599.1 MGP_AJ_G0035501.1 mouse_genomes_project X 2343299 2346148 + MGP_AJ_P0095599 Tfe3 protein_coding protein_coding MGP_AJ_T0095600.1 MGP_AJ_G0035501.1 mouse_genomes_project X 2343315 2354743 + MGP_AJ_P0095600 Tfe3 protein_coding protein_coding MGP_AJ_T0095601.1 MGP_AJ_G0035501.1 mouse_genomes_project X 2343397 2354739 + MGP_AJ_P0095601 Tfe3 protein_coding protein_coding MGP_AJ_T0095602.1 MGP_AJ_G0035501.1 mouse_genomes_project X 2343441 2354741 + MGP_AJ_P0095602 Tfe3 protein_coding protein_coding MGP_AJ_T0095603.1 MGP_AJ_G0035501.1 mouse_genomes_project X 2344008 2354739 + Tfe3 protein_coding retained_intron MGP_AJ_T0095604.1 MGP_AJ_G0035501.1 mouse_genomes_project X 2348785 2350674 + Tfe3 protein_coding retained_intron MGP_AJ_T0018686.1 MGP_AJ_G0015774.1 mouse_genomes_project X 166651261 166698232 + Gm15246 processed_transcript processed_transcript MGP_AJ_T0018687.1 MGP_AJ_G0015774.1 mouse_genomes_project X 166651261 166689079 + Gm15246 processed_transcript processed_transcript MGP_AJ_T0016442.1 MGP_AJ_G0014537.1 mouse_genomes_project X 72111579 72111993 - processed_pseudogene processed_pseudogene MGP_AJ_T0096904.1 MGP_AJ_G0035886.1 mouse_genomes_project X 88488229 88489006 - MGP_AJ_P0096904 protein_coding protein_coding MGP_AJ_T0016777.1 MGP_AJ_G0014872.1 mouse_genomes_project X 138879823 138881970 + processed_pseudogene processed_pseudogene MGP_AJ_T0096156.1 MGP_AJ_G0035681.1 mouse_genomes_project X 43728701 43740097 + MGP_AJ_P0096156 Rbmx2 protein_coding unknown_likely_coding MGP_AJ_T0096157.1 MGP_AJ_G0035681.1 mouse_genomes_project X 43736330 43738926 + Rbmx2 protein_coding processed_transcript MGP_AJ_T0016363.1 MGP_AJ_G0014458.1 mouse_genomes_project X 56149079 56151011 - processed_pseudogene processed_pseudogene MGP_AJ_T0016380.1 MGP_AJ_G0014475.1 mouse_genomes_project X 57864086 57865186 + processed_pseudogene processed_pseudogene MGP_AJ_T0016780.1 MGP_AJ_G0014875.1 mouse_genomes_project X 139110358 139111300 + processed_pseudogene processed_pseudogene MGP_AJ_T0016612.1 MGP_AJ_G0014707.1 mouse_genomes_project X 101709736 101710763 + processed_pseudogene processed_pseudogene MGP_AJ_T0011169.1 MGP_AJ_G0009291.1 mouse_genomes_project X 62582977 62583057 - Mir465b-2 miRNA miRNA MGP_AJ_T0016892.1 MGP_AJ_G0014987.1 mouse_genomes_project X 161023935 161024151 - processed_pseudogene processed_pseudogene MGP_AJ_T0016405.1 MGP_AJ_G0014500.1 mouse_genomes_project X 64344679 64345990 + processed_pseudogene processed_pseudogene MGP_AJ_T0016591.1 MGP_AJ_G0014686.1 mouse_genomes_project X 99794715 99795234 + processed_pseudogene processed_pseudogene MGP_AJ_T0100381.1 MGP_AJ_G0038347.1 mouse_genomes_project X 142554206 142554304 - Gm27659 snRNA snRNA MGP_AJ_T0018631.1 MGP_AJ_G0015757.1 mouse_genomes_project X 48855246 48856593 - processed_transcript TEC MGP_AJ_T0018632.1 MGP_AJ_G0015757.1 mouse_genomes_project X 48856259 48867527 - processed_transcript lincRNA MGP_AJ_T0097685.1 MGP_AJ_G0036116.1 mouse_genomes_project X 137849514 137881610 + MGP_AJ_P0097685 Vsig1 protein_coding protein_coding MGP_AJ_T0097686.1 MGP_AJ_G0036116.1 mouse_genomes_project X 137865095 137880371 + Vsig1 protein_coding processed_transcript MGP_AJ_T0096233.1 MGP_AJ_G0035716.1 mouse_genomes_project X 51854343 51858444 + MGP_AJ_P0096233 Smim10l2a protein_coding protein_coding MGP_AJ_T0096626.1 MGP_AJ_G0035816.1 mouse_genomes_project X 70239283 70242482 + MGP_AJ_P0096626 Emd protein_coding protein_coding MGP_AJ_T0096627.1 MGP_AJ_G0035816.1 mouse_genomes_project X 70239348 70241956 + MGP_AJ_P0096627 Emd protein_coding protein_coding MGP_AJ_T0096628.1 MGP_AJ_G0035816.1 mouse_genomes_project X 70239357 70240282 + Emd protein_coding processed_transcript MGP_AJ_T0096629.1 MGP_AJ_G0035816.1 mouse_genomes_project X 70239406 70245593 + MGP_AJ_P0096629 Emd protein_coding protein_coding MGP_AJ_T0096630.1 MGP_AJ_G0035816.1 mouse_genomes_project X 70239412 70241918 + MGP_AJ_P0096630 Emd protein_coding nonsense_mediated_decay MGP_AJ_T0096631.1 MGP_AJ_G0035816.1 mouse_genomes_project X 70239426 70246079 + MGP_AJ_P0096631 Emd protein_coding protein_coding MGP_AJ_T0011179.1 MGP_AJ_G0009301.1 mouse_genomes_project X 70002586 70002657 - Mir5132 miRNA miRNA MGP_AJ_T0096947.1 MGP_AJ_G0035897.1 mouse_genomes_project X 90869533 90915580 + MGP_AJ_P0096947 Apoo-ps protein_coding protein_coding MGP_AJ_T0096948.1 MGP_AJ_G0035897.1 mouse_genomes_project X 90869533 90920657 + MGP_AJ_P0096948 Apoo-ps protein_coding protein_coding MGP_AJ_T0097206.1 MGP_AJ_G0035960.1 mouse_genomes_project X 99464215 99469675 - MGP_AJ_P0097206 Dmrtc1a protein_coding protein_coding MGP_AJ_T0097207.1 MGP_AJ_G0035960.1 mouse_genomes_project X 99464221 99467561 - MGP_AJ_P0097207 Dmrtc1a protein_coding protein_coding MGP_AJ_T0097208.1 MGP_AJ_G0035960.1 mouse_genomes_project X 99464221 99467472 - MGP_AJ_P0097208 Dmrtc1a protein_coding protein_coding MGP_AJ_T0097209.1 MGP_AJ_G0035960.1 mouse_genomes_project X 99464221 99469690 - MGP_AJ_P0097209 Dmrtc1a protein_coding protein_coding MGP_AJ_T0016448.1 MGP_AJ_G0014543.1 mouse_genomes_project X 73109134 73109573 + processed_pseudogene processed_pseudogene MGP_AJ_T0016330.1 MGP_AJ_G0014425.1 mouse_genomes_project X 46250391 46250828 - processed_pseudogene processed_pseudogene MGP_AJ_T0011213.1 MGP_AJ_G0009335.1 mouse_genomes_project X 143881902 143882007 + Gm22650 miRNA miRNA MGP_AJ_T0009406.1 MGP_AJ_G0007550.1 mouse_genomes_project X 95888471 95926743 - Gm14812 lincRNA lincRNA MGP_AJ_T0009401.1 MGP_AJ_G0007545.1 mouse_genomes_project X 88033412 88034077 - 1700003E24Rik lincRNA lincRNA MGP_AJ_T0016807.1 MGP_AJ_G0014902.1 mouse_genomes_project X 142955370 142956454 + processed_pseudogene processed_pseudogene MGP_AJ_T0096459.1 MGP_AJ_G0035794.1 mouse_genomes_project X 69607080 69611176 + MGP_AJ_P0096459 Dusp9 protein_coding protein_coding MGP_AJ_T0097938.1 MGP_AJ_G0036172.1 mouse_genomes_project X 150570303 150571138 + MGP_AJ_P0097938 Cypt2 protein_coding protein_coding MGP_AJ_T0098059.1 MGP_AJ_G0036204.1 mouse_genomes_project X 157957643 158123125 - MGP_AJ_P0098059 Cdkl5 protein_coding nonsense_mediated_decay MGP_AJ_T0098060.1 MGP_AJ_G0036204.1 mouse_genomes_project X 157957643 158123092 - MGP_AJ_P0098060 Cdkl5 protein_coding nonsense_mediated_decay MGP_AJ_T0098061.1 MGP_AJ_G0036204.1 mouse_genomes_project X 157974879 158187921 - MGP_AJ_P0098061 Cdkl5 protein_coding protein_coding MGP_AJ_T0098063.1 MGP_AJ_G0036204.1 mouse_genomes_project X 157989721 158007753 - Cdkl5 protein_coding processed_transcript MGP_AJ_T0098064.1 MGP_AJ_G0036204.1 mouse_genomes_project X 157991962 158123092 - MGP_AJ_P0098064 Cdkl5 protein_coding protein_coding MGP_AJ_T0098065.1 MGP_AJ_G0036204.1 mouse_genomes_project X 158037997 158041553 - Cdkl5 protein_coding retained_intron MGP_AJ_T0097370.1 MGP_AJ_G0036015.1 mouse_genomes_project X 109226074 109291546 - MGP_AJ_P0097370 Pof1b protein_coding protein_coding MGP_AJ_T0016415.1 MGP_AJ_G0014510.1 mouse_genomes_project X 66436607 66437152 - processed_pseudogene processed_pseudogene MGP_AJ_T0009431.1 MGP_AJ_G0007563.1 mouse_genomes_project X 130258345 130277668 + Gm26851 lincRNA lincRNA MGP_AJ_T0011175.1 MGP_AJ_G0009297.1 mouse_genomes_project X 68170088 68170173 - Mir452 miRNA miRNA MGP_AJ_T0096235.1 MGP_AJ_G0035718.1 mouse_genomes_project X 51935978 51990434 + Ddx26b protein_coding processed_transcript MGP_AJ_T0096236.1 MGP_AJ_G0035718.1 mouse_genomes_project X 51935998 51990433 + MGP_AJ_P0096236 Ddx26b protein_coding protein_coding MGP_AJ_T0096237.1 MGP_AJ_G0035718.1 mouse_genomes_project X 51936001 51978318 + MGP_AJ_P0096237 Ddx26b protein_coding protein_coding MGP_AJ_T0096238.1 MGP_AJ_G0035718.1 mouse_genomes_project X 51936006 51990434 + MGP_AJ_P0096238 Ddx26b protein_coding protein_coding MGP_AJ_T0096239.1 MGP_AJ_G0035718.1 mouse_genomes_project X 51936006 51990437 + MGP_AJ_P0096239 Ddx26b protein_coding nonsense_mediated_decay MGP_AJ_T0096240.1 MGP_AJ_G0035718.1 mouse_genomes_project X 51966294 51990432 + MGP_AJ_P0096240 Ddx26b protein_coding protein_coding MGP_AJ_T0096241.1 MGP_AJ_G0035718.1 mouse_genomes_project X 51987668 51990279 + MGP_AJ_P0096241 Ddx26b protein_coding protein_coding MGP_AJ_T0016390.1 MGP_AJ_G0014485.1 mouse_genomes_project X 60647347 60648250 + processed_pseudogene processed_pseudogene MGP_AJ_T0097223.1 MGP_AJ_G0035970.1 mouse_genomes_project X 100667477 100782822 - MGP_AJ_P0097223 C77370 protein_coding protein_coding MGP_AJ_T0097224.1 MGP_AJ_G0035970.1 mouse_genomes_project X 100667478 100782754 - MGP_AJ_P0097224 C77370 protein_coding protein_coding MGP_AJ_T0097225.1 MGP_AJ_G0035970.1 mouse_genomes_project X 100673757 100782781 - MGP_AJ_P0097225 C77370 protein_coding protein_coding MGP_AJ_T0096318.1 MGP_AJ_G0035742.1 mouse_genomes_project X 56787711 56790236 - MGP_AJ_P0096318 Cdr1 protein_coding protein_coding MGP_AJ_T0016223.1 MGP_AJ_G0014318.1 mouse_genomes_project X 7101091 7101441 - processed_pseudogene processed_pseudogene MGP_AJ_T0096093.1 MGP_AJ_G0035664.1 mouse_genomes_project X 39775151 39778779 - MGP_AJ_P0096093 Dcaf12l1 protein_coding protein_coding MGP_AJ_T0096094.1 MGP_AJ_G0035664.1 mouse_genomes_project X 39775151 39778743 - MGP_AJ_P0096094 Dcaf12l1 protein_coding protein_coding MGP_AJ_T0016446.1 MGP_AJ_G0014541.1 mouse_genomes_project X 72871916 72873094 + processed_pseudogene processed_pseudogene MGP_AJ_T0095781.1 MGP_AJ_G0035550.1 mouse_genomes_project X 8407857 8430998 + MGP_AJ_P0095781 Nyx protein_coding protein_coding MGP_AJ_T0016908.1 MGP_AJ_G0015003.1 mouse_genomes_project X 165705026 165705421 + processed_pseudogene processed_pseudogene MGP_AJ_T0016420.1 MGP_AJ_G0014515.1 mouse_genomes_project X 67386135 67386440 - processed_pseudogene processed_pseudogene MGP_AJ_T0016707.1 MGP_AJ_G0014802.1 mouse_genomes_project X 124740483 124741147 + processed_pseudogene processed_pseudogene MGP_AJ_T0002479.1 MGP_AJ_G0002388.1 mouse_genomes_project X 100359725 100361737 - TEC TEC MGP_AJ_T0097297.1 MGP_AJ_G0035991.1 mouse_genomes_project X 103814341 103837153 + MGP_AJ_P0097297 A630033H20Rik protein_coding protein_coding MGP_AJ_T0097298.1 MGP_AJ_G0035991.1 mouse_genomes_project X 103814341 103839413 + MGP_AJ_P0097298 A630033H20Rik protein_coding protein_coding MGP_AJ_T0097299.1 MGP_AJ_G0035991.1 mouse_genomes_project X 103814868 103839413 + MGP_AJ_P0097299 A630033H20Rik protein_coding protein_coding MGP_AJ_T0097300.1 MGP_AJ_G0035991.1 mouse_genomes_project X 103814868 103837179 + MGP_AJ_P0097300 A630033H20Rik protein_coding protein_coding MGP_AJ_T0097301.1 MGP_AJ_G0035991.1 mouse_genomes_project X 103815012 103836899 + MGP_AJ_P0097301 A630033H20Rik protein_coding protein_coding MGP_AJ_T0097302.1 MGP_AJ_G0035991.1 mouse_genomes_project X 103815029 103839409 + MGP_AJ_P0097302 A630033H20Rik protein_coding protein_coding MGP_AJ_T0100356.1 MGP_AJ_G0038322.1 mouse_genomes_project X 95284422 95284529 + Gm26000 snRNA snRNA MGP_AJ_T0100333.1 MGP_AJ_G0038299.1 mouse_genomes_project X 34324275 34324380 - Gm26437 snRNA snRNA MGP_AJ_T0016756.1 MGP_AJ_G0014851.1 mouse_genomes_project X 136064700 136065519 - processed_pseudogene processed_pseudogene MGP_AJ_T0009404.1 MGP_AJ_G0007548.1 mouse_genomes_project X 92289796 92290476 - 1700010D01Rik lincRNA lincRNA MGP_AJ_T0098771.1 MGP_AJ_G0036755.1 mouse_genomes_project X 66970194 66970312 + n-R5s8 rRNA rRNA MGP_AJ_T0096705.1 MGP_AJ_G0035824.1 mouse_genomes_project X 70335393 70337712 - MGP_AJ_P0096705 Lage3 protein_coding protein_coding MGP_AJ_T0096706.1 MGP_AJ_G0035824.1 mouse_genomes_project X 70336278 70337736 - MGP_AJ_P0096706 Lage3 protein_coding protein_coding MGP_AJ_T0096707.1 MGP_AJ_G0035824.1 mouse_genomes_project X 70336279 70337693 - MGP_AJ_P0096707 Lage3 protein_coding protein_coding MGP_AJ_T0016355.1 MGP_AJ_G0014450.1 mouse_genomes_project X 53794366 53795046 + processed_pseudogene processed_pseudogene MGP_AJ_T0097462.1 MGP_AJ_G0036049.1 mouse_genomes_project X 130997702 131048266 + MGP_AJ_P0097462 Drp2 protein_coding protein_coding MGP_AJ_T0097463.1 MGP_AJ_G0036049.1 mouse_genomes_project X 130997779 131052119 + MGP_AJ_P0097463 Drp2 protein_coding protein_coding MGP_AJ_T0097464.1 MGP_AJ_G0036049.1 mouse_genomes_project X 130997902 131049162 + MGP_AJ_P0097464 Drp2 protein_coding protein_coding MGP_AJ_T0097465.1 MGP_AJ_G0036049.1 mouse_genomes_project X 130997915 131048573 + MGP_AJ_P0097465 Drp2 protein_coding protein_coding MGP_AJ_T0097466.1 MGP_AJ_G0036049.1 mouse_genomes_project X 131018837 131030990 + Drp2 protein_coding processed_transcript MGP_AJ_T0097467.1 MGP_AJ_G0036049.1 mouse_genomes_project X 131018891 131048966 + Drp2 protein_coding retained_intron MGP_AJ_T0095793.1 MGP_AJ_G0035552.1 mouse_genomes_project X 8578257 8586948 + MGP_AJ_P0095793 Gpr34 protein_coding protein_coding MGP_AJ_T0095794.1 MGP_AJ_G0035552.1 mouse_genomes_project X 8578937 8586950 + MGP_AJ_P0095794 Gpr34 protein_coding protein_coding MGP_AJ_T0097394.1 MGP_AJ_G0036026.1 mouse_genomes_project X 116777262 117409568 + MGP_AJ_P0097394 Pcdh11x protein_coding protein_coding MGP_AJ_T0097395.1 MGP_AJ_G0036026.1 mouse_genomes_project X 116777262 117409568 + MGP_AJ_P0097395 Pcdh11x protein_coding protein_coding MGP_AJ_T0097396.1 MGP_AJ_G0036026.1 mouse_genomes_project X 116777338 116779475 + Pcdh11x protein_coding retained_intron MGP_AJ_T0097397.1 MGP_AJ_G0036026.1 mouse_genomes_project X 116777338 117413745 + MGP_AJ_P0097397 Pcdh11x protein_coding protein_coding MGP_AJ_T0097398.1 MGP_AJ_G0036026.1 mouse_genomes_project X 116777414 117409568 + MGP_AJ_P0097398 Pcdh11x protein_coding nonsense_mediated_decay MGP_AJ_T0097400.1 MGP_AJ_G0036026.1 mouse_genomes_project X 116845489 117413733 + MGP_AJ_P0097400 Pcdh11x protein_coding protein_coding MGP_AJ_T0097401.1 MGP_AJ_G0036026.1 mouse_genomes_project X 116846263 116892340 + MGP_AJ_P0097401 Pcdh11x protein_coding protein_coding MGP_AJ_T0097402.1 MGP_AJ_G0036026.1 mouse_genomes_project X 116882483 117409568 + MGP_AJ_P0097402 Pcdh11x protein_coding protein_coding MGP_AJ_T0097403.1 MGP_AJ_G0036026.1 mouse_genomes_project X 116882483 117409566 + MGP_AJ_P0097403 Pcdh11x protein_coding nonsense_mediated_decay MGP_AJ_T0016873.1 MGP_AJ_G0014968.1 mouse_genomes_project X 157471610 157471873 - processed_pseudogene processed_pseudogene MGP_AJ_T0016339.1 MGP_AJ_G0014434.1 mouse_genomes_project X 47955725 47956216 + processed_pseudogene processed_pseudogene MGP_AJ_T0102955.1 MGP_AJ_G0040695.1 mouse_genomes_project X 82577409 82578441 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0016402.1 MGP_AJ_G0014497.1 mouse_genomes_project X 64048909 64049522 - processed_pseudogene processed_pseudogene MGP_AJ_T0098805.1 MGP_AJ_G0036789.1 mouse_genomes_project X 78299625 78299844 + Gm26174 ribozyme ribozyme MGP_AJ_T0016364.1 MGP_AJ_G0014459.1 mouse_genomes_project X 56187192 56187634 - processed_pseudogene processed_pseudogene MGP_AJ_T0097836.1 MGP_AJ_G0036150.1 mouse_genomes_project X 147989287 148031799 + MGP_AJ_P0097836 Fgd1 protein_coding protein_coding MGP_AJ_T0097837.1 MGP_AJ_G0036150.1 mouse_genomes_project X 147990307 148031799 + MGP_AJ_P0097837 Fgd1 protein_coding protein_coding MGP_AJ_T0097838.1 MGP_AJ_G0036150.1 mouse_genomes_project X 148009897 148012183 + Fgd1 protein_coding retained_intron MGP_AJ_T0097839.1 MGP_AJ_G0036150.1 mouse_genomes_project X 148028387 148029459 + Fgd1 protein_coding retained_intron MGP_AJ_T0016510.1 MGP_AJ_G0014605.1 mouse_genomes_project X 86388084 86388840 + processed_pseudogene processed_pseudogene MGP_AJ_T0016429.1 MGP_AJ_G0014524.1 mouse_genomes_project X 70498538 70498982 - processed_pseudogene processed_pseudogene MGP_AJ_T0096752.1 MGP_AJ_G0035831.1 mouse_genomes_project X 70598392 70599340 + MGP_AJ_P0096752 Olfr1325 protein_coding protein_coding MGP_AJ_T0016837.1 MGP_AJ_G0014932.1 mouse_genomes_project X 151524394 151525041 + processed_pseudogene processed_pseudogene MGP_AJ_T0009429.1 MGP_AJ_G0007561.1 mouse_genomes_project X 116230201 116232493 - Gm14929 lincRNA lincRNA MGP_AJ_T0009450.1 MGP_AJ_G0007576.1 mouse_genomes_project X 164369696 164376926 - Gm8817 lincRNA lincRNA MGP_AJ_T0009451.1 MGP_AJ_G0007576.1 mouse_genomes_project X 164369838 164376926 - Gm8817 lincRNA lincRNA MGP_AJ_T0009452.1 MGP_AJ_G0007576.1 mouse_genomes_project X 164370054 164374884 - Gm8817 lincRNA lincRNA MGP_AJ_T0016809.1 MGP_AJ_G0014904.1 mouse_genomes_project X 143396047 143396521 + processed_pseudogene processed_pseudogene MGP_AJ_T0100367.1 MGP_AJ_G0038333.1 mouse_genomes_project X 105717643 105717810 - Gm23322 snRNA snRNA MGP_AJ_T0097583.1 MGP_AJ_G0036086.1 mouse_genomes_project X 133631544 133649092 + MGP_AJ_P0097583 Plp1 protein_coding protein_coding MGP_AJ_T0097584.1 MGP_AJ_G0036086.1 mouse_genomes_project X 133631663 133647118 + MGP_AJ_P0097584 Plp1 protein_coding protein_coding MGP_AJ_T0097585.1 MGP_AJ_G0036086.1 mouse_genomes_project X 133640058 133641489 + Plp1 protein_coding retained_intron MGP_AJ_T0097586.1 MGP_AJ_G0036086.1 mouse_genomes_project X 133642224 133643892 + Plp1 protein_coding retained_intron MGP_AJ_T0016191.1 MGP_AJ_G0014286.1 mouse_genomes_project X 455315 457139 - processed_pseudogene processed_pseudogene MGP_AJ_T0016422.1 MGP_AJ_G0014517.1 mouse_genomes_project X 68580730 68581066 - processed_pseudogene processed_pseudogene MGP_AJ_T0096835.1 MGP_AJ_G0035861.1 mouse_genomes_project X 74194036 74267960 + MGP_AJ_P0096835 Gm5938 protein_coding protein_coding MGP_AJ_T0096836.1 MGP_AJ_G0035861.1 mouse_genomes_project X 74195429 74267027 + Gm5938 protein_coding retained_intron MGP_AJ_T0095782.1 MGP_AJ_G0035551.1 mouse_genomes_project X 8458733 8804768 - MGP_AJ_P0095782 Cask protein_coding protein_coding MGP_AJ_T0095783.1 MGP_AJ_G0035551.1 mouse_genomes_project X 8458733 8804731 - MGP_AJ_P0095783 Cask protein_coding protein_coding MGP_AJ_T0095784.1 MGP_AJ_G0035551.1 mouse_genomes_project X 8458733 8742916 - MGP_AJ_P0095784 Cask protein_coding protein_coding MGP_AJ_T0095785.1 MGP_AJ_G0035551.1 mouse_genomes_project X 8464813 8804746 - MGP_AJ_P0095785 Cask protein_coding protein_coding MGP_AJ_T0095786.1 MGP_AJ_G0035551.1 mouse_genomes_project X 8465264 8470342 - MGP_AJ_P0095786 Cask protein_coding protein_coding MGP_AJ_T0095787.1 MGP_AJ_G0035551.1 mouse_genomes_project X 8465562 8481503 - MGP_AJ_P0095787 Cask protein_coding protein_coding MGP_AJ_T0095788.1 MGP_AJ_G0035551.1 mouse_genomes_project X 8465653 8753017 - MGP_AJ_P0095788 Cask protein_coding unknown_likely_coding MGP_AJ_T0095789.1 MGP_AJ_G0035551.1 mouse_genomes_project X 8477173 8502705 - MGP_AJ_P0095789 Cask protein_coding protein_coding MGP_AJ_T0095790.1 MGP_AJ_G0035551.1 mouse_genomes_project X 8497868 8804768 - Cask protein_coding retained_intron MGP_AJ_T0095791.1 MGP_AJ_G0035551.1 mouse_genomes_project X 8514980 8631074 - MGP_AJ_P0095791 Cask protein_coding protein_coding MGP_AJ_T0095792.1 MGP_AJ_G0035551.1 mouse_genomes_project X 8572460 8804278 - MGP_AJ_P0095792 Cask protein_coding protein_coding MGP_AJ_T0095796.1 MGP_AJ_G0035551.1 mouse_genomes_project X 8670376 8809556 - Cask protein_coding processed_transcript MGP_AJ_T0095797.1 MGP_AJ_G0035551.1 mouse_genomes_project X 8804279 8804925 - Cask protein_coding processed_transcript MGP_AJ_T0097389.1 MGP_AJ_G0036022.1 mouse_genomes_project X 113001020 113022826 + MGP_AJ_P0097389 Cpxcr1 protein_coding protein_coding MGP_AJ_T0016533.1 MGP_AJ_G0014628.1 mouse_genomes_project X 90820360 90821261 - processed_pseudogene processed_pseudogene MGP_AJ_T0016473.1 MGP_AJ_G0014568.1 mouse_genomes_project X 77960814 77963243 - processed_pseudogene processed_pseudogene MGP_AJ_T0095966.1 MGP_AJ_G0035616.1 mouse_genomes_project X 32270328 32520536 + MGP_AJ_P0095966 Rhox2b protein_coding protein_coding MGP_AJ_T0100349.1 MGP_AJ_G0038315.1 mouse_genomes_project X 68506690 68506797 + Gm23461 snRNA snRNA MGP_AJ_T0016861.1 MGP_AJ_G0014956.1 mouse_genomes_project X 155354938 155356022 + processed_pseudogene processed_pseudogene MGP_AJ_T0009381.1 MGP_AJ_G0007530.1 mouse_genomes_project X 33505117 33510746 + Gm7598 lincRNA lincRNA MGP_AJ_T0100359.1 MGP_AJ_G0038325.1 mouse_genomes_project X 97747339 97747473 + Gm22472 snRNA snRNA MGP_AJ_T0098778.1 MGP_AJ_G0036762.1 mouse_genomes_project X 149256854 149256965 + n-R5s15 rRNA rRNA MGP_AJ_T0011133.1 MGP_AJ_G0009255.1 mouse_genomes_project X 47441499 47441560 - Mir6384 miRNA miRNA MGP_AJ_T0016815.1 MGP_AJ_G0014910.1 mouse_genomes_project X 147358810 147359089 + processed_pseudogene processed_pseudogene MGP_AJ_T0016508.1 MGP_AJ_G0014603.1 mouse_genomes_project X 85758301 85759109 - processed_pseudogene processed_pseudogene MGP_AJ_T0097236.1 MGP_AJ_G0035978.1 mouse_genomes_project X 102346361 102479213 - MGP_AJ_P0097236 Atrx protein_coding protein_coding MGP_AJ_T0097237.1 MGP_AJ_G0035978.1 mouse_genomes_project X 102349163 102350797 - Atrx protein_coding retained_intron MGP_AJ_T0097238.1 MGP_AJ_G0035978.1 mouse_genomes_project X 102350496 102352546 - Atrx protein_coding retained_intron MGP_AJ_T0097239.1 MGP_AJ_G0035978.1 mouse_genomes_project X 102367504 102375538 - MGP_AJ_P0097239 Atrx protein_coding nonsense_mediated_decay MGP_AJ_T0097240.1 MGP_AJ_G0035978.1 mouse_genomes_project X 102367530 102379064 - Atrx protein_coding processed_transcript MGP_AJ_T0097241.1 MGP_AJ_G0035978.1 mouse_genomes_project X 102375556 102387690 - MGP_AJ_P0097241 Atrx protein_coding nonsense_mediated_decay MGP_AJ_T0097242.1 MGP_AJ_G0035978.1 mouse_genomes_project X 102387442 102396088 - Atrx protein_coding retained_intron MGP_AJ_T0097243.1 MGP_AJ_G0035978.1 mouse_genomes_project X 102387797 102396272 - Atrx protein_coding retained_intron MGP_AJ_T0097244.1 MGP_AJ_G0035978.1 mouse_genomes_project X 102395698 102401140 - Atrx protein_coding retained_intron MGP_AJ_T0097245.1 MGP_AJ_G0035978.1 mouse_genomes_project X 102396051 102400854 - Atrx protein_coding retained_intron MGP_AJ_T0097246.1 MGP_AJ_G0035978.1 mouse_genomes_project X 102400764 102424273 - Atrx protein_coding retained_intron MGP_AJ_T0097247.1 MGP_AJ_G0035978.1 mouse_genomes_project X 102401328 102424604 - MGP_AJ_P0097247 Atrx protein_coding protein_coding MGP_AJ_T0097248.1 MGP_AJ_G0035978.1 mouse_genomes_project X 102405751 102436777 - MGP_AJ_P0097248 Atrx protein_coding nonsense_mediated_decay MGP_AJ_T0097249.1 MGP_AJ_G0035978.1 mouse_genomes_project X 102414636 102424314 - MGP_AJ_P0097249 Atrx protein_coding protein_coding MGP_AJ_T0097250.1 MGP_AJ_G0035978.1 mouse_genomes_project X 102424138 102479176 - MGP_AJ_P0097250 Atrx protein_coding protein_coding MGP_AJ_T0097251.1 MGP_AJ_G0035978.1 mouse_genomes_project X 102425516 102479152 - MGP_AJ_P0097251 Atrx protein_coding protein_coding MGP_AJ_T0097252.1 MGP_AJ_G0035978.1 mouse_genomes_project X 102425968 102479160 - MGP_AJ_P0097252 Atrx protein_coding protein_coding MGP_AJ_T0097253.1 MGP_AJ_G0035978.1 mouse_genomes_project X 102425968 102479180 - MGP_AJ_P0097253 Atrx protein_coding protein_coding MGP_AJ_T0097254.1 MGP_AJ_G0035978.1 mouse_genomes_project X 102426248 102479177 - MGP_AJ_P0097254 Atrx protein_coding protein_coding MGP_AJ_T0097255.1 MGP_AJ_G0035978.1 mouse_genomes_project X 102426449 102479169 - MGP_AJ_P0097255 Atrx protein_coding protein_coding MGP_AJ_T0097256.1 MGP_AJ_G0035978.1 mouse_genomes_project X 102426488 102479157 - MGP_AJ_P0097256 Atrx protein_coding protein_coding MGP_AJ_T0097257.1 MGP_AJ_G0035978.1 mouse_genomes_project X 102427373 102429392 - Atrx protein_coding retained_intron MGP_AJ_T0097258.1 MGP_AJ_G0035978.1 mouse_genomes_project X 102427393 102479048 - MGP_AJ_P0097258 Atrx protein_coding protein_coding MGP_AJ_T0097259.1 MGP_AJ_G0035978.1 mouse_genomes_project X 102430959 102478272 - MGP_AJ_P0097259 Atrx protein_coding protein_coding MGP_AJ_T0097260.1 MGP_AJ_G0035978.1 mouse_genomes_project X 102433360 102479113 - MGP_AJ_P0097260 Atrx protein_coding protein_coding MGP_AJ_T0097261.1 MGP_AJ_G0035978.1 mouse_genomes_project X 102436734 102479207 - MGP_AJ_P0097261 Atrx protein_coding protein_coding MGP_AJ_T0097262.1 MGP_AJ_G0035978.1 mouse_genomes_project X 102448932 102479156 - Atrx protein_coding processed_transcript MGP_AJ_T0016342.1 MGP_AJ_G0014437.1 mouse_genomes_project X 48736206 48736766 + processed_pseudogene processed_pseudogene MGP_AJ_T0097621.1 MGP_AJ_G0036098.1 mouse_genomes_project X 135949061 135956169 + MGP_AJ_P0097621 4930513O06Rik protein_coding protein_coding MGP_AJ_T0016449.1 MGP_AJ_G0014544.1 mouse_genomes_project X 73377704 73378689 - processed_pseudogene processed_pseudogene MGP_AJ_T0016844.1 MGP_AJ_G0014939.1 mouse_genomes_project X 152350417 152351119 + processed_pseudogene processed_pseudogene MGP_AJ_T0016288.1 MGP_AJ_G0014383.1 mouse_genomes_project X 35030439 35030868 - processed_pseudogene processed_pseudogene MGP_AJ_T0101613.1 MGP_AJ_G0039579.1 mouse_genomes_project X 63315946 63316055 - Gm26276 snoRNA snoRNA MGP_AJ_T0016641.1 MGP_AJ_G0014736.1 mouse_genomes_project X 107359534 107362163 + processed_pseudogene processed_pseudogene MGP_AJ_T0097941.1 MGP_AJ_G0036174.1 mouse_genomes_project X 150707473 150718695 - MGP_AJ_P0097941 Kctd12b protein_coding protein_coding MGP_AJ_T0097942.1 MGP_AJ_G0036174.1 mouse_genomes_project X 150707473 150718584 - MGP_AJ_P0097942 Kctd12b protein_coding protein_coding MGP_AJ_T0101655.1 MGP_AJ_G0039621.1 mouse_genomes_project X 152305794 152305926 + Gm25429 snoRNA snoRNA MGP_AJ_T0095936.1 MGP_AJ_G0035602.1 mouse_genomes_project X 31811005 31851977 - MGP_AJ_P0095936 C330007P06Rik protein_coding protein_coding MGP_AJ_T0095937.1 MGP_AJ_G0035602.1 mouse_genomes_project X 31826676 31844854 - C330007P06Rik protein_coding retained_intron MGP_AJ_T0095938.1 MGP_AJ_G0035602.1 mouse_genomes_project X 31838424 31851871 - MGP_AJ_P0095938 C330007P06Rik protein_coding unknown_likely_coding MGP_AJ_T0016227.1 MGP_AJ_G0014322.1 mouse_genomes_project X 7849664 7850364 - processed_pseudogene processed_pseudogene MGP_AJ_T0016340.1 MGP_AJ_G0014435.1 mouse_genomes_project X 47956274 47957672 + processed_pseudogene processed_pseudogene MGP_AJ_T0102931.1 MGP_AJ_G0040671.1 mouse_genomes_project X 4410036 4410290 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0102932.1 MGP_AJ_G0040672.1 mouse_genomes_project X 8111625 8111763 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0096290.1 MGP_AJ_G0035732.1 mouse_genomes_project X 52940682 53017614 + MGP_AJ_P0096290 Gm364 protein_coding protein_coding MGP_AJ_T0016344.1 MGP_AJ_G0014439.1 mouse_genomes_project X 48930725 48930926 + processed_pseudogene processed_pseudogene MGP_AJ_T0097456.1 MGP_AJ_G0036047.1 mouse_genomes_project X 130882749 130894340 + MGP_AJ_P0097456 Tmem35a protein_coding protein_coding MGP_AJ_T0016325.1 MGP_AJ_G0014420.1 mouse_genomes_project X 44573110 44573369 + processed_pseudogene processed_pseudogene MGP_AJ_T0097009.1 MGP_AJ_G0035914.1 mouse_genomes_project X 93592363 93602045 + MGP_AJ_P0097009 Pgr15l protein_coding protein_coding MGP_AJ_T0101895.1 MGP_AJ_G0039763.1 mouse_genomes_project X 17424503 17425266 + transcribed_processed_pseudogene processed_transcript MGP_AJ_T0101896.1 MGP_AJ_G0039763.1 mouse_genomes_project X 17424600 17425209 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0016554.1 MGP_AJ_G0014649.1 mouse_genomes_project X 93460208 93460743 - processed_pseudogene processed_pseudogene MGP_AJ_T0101616.1 MGP_AJ_G0039582.1 mouse_genomes_project X 66536199 66536331 + Gm22785 snoRNA snoRNA MGP_AJ_T0097661.1 MGP_AJ_G0036109.1 mouse_genomes_project X 136901668 136975380 - MGP_AJ_P0097661 Nup62cl protein_coding protein_coding MGP_AJ_T0097662.1 MGP_AJ_G0036109.1 mouse_genomes_project X 136927310 136975105 - MGP_AJ_P0097662 Nup62cl protein_coding protein_coding MGP_AJ_T0097663.1 MGP_AJ_G0036109.1 mouse_genomes_project X 136934257 136975524 - MGP_AJ_P0097663 Nup62cl protein_coding protein_coding MGP_AJ_T0097664.1 MGP_AJ_G0036109.1 mouse_genomes_project X 136934857 136975392 - MGP_AJ_P0097664 Nup62cl protein_coding protein_coding MGP_AJ_T0097665.1 MGP_AJ_G0036109.1 mouse_genomes_project X 136941438 136975363 - MGP_AJ_P0097665 Nup62cl protein_coding protein_coding MGP_AJ_T0095657.1 MGP_AJ_G0035513.1 mouse_genomes_project X 2544566 2552986 - MGP_AJ_P0095657 Gata1 protein_coding protein_coding MGP_AJ_T0095658.1 MGP_AJ_G0035513.1 mouse_genomes_project X 2547515 2563908 - MGP_AJ_P0095658 Gata1 protein_coding protein_coding MGP_AJ_T0095659.1 MGP_AJ_G0035513.1 mouse_genomes_project X 2548104 2549242 - MGP_AJ_P0095659 Gata1 protein_coding protein_coding MGP_AJ_T0097766.1 MGP_AJ_G0036141.1 mouse_genomes_project X 144253138 144302694 - MGP_AJ_P0097766 Il13ra2 protein_coding protein_coding MGP_AJ_T0097767.1 MGP_AJ_G0036141.1 mouse_genomes_project X 144253140 144273481 - MGP_AJ_P0097767 Il13ra2 protein_coding protein_coding MGP_AJ_T0096753.1 MGP_AJ_G0035832.1 mouse_genomes_project X 70649882 70657370 + MGP_AJ_P0096753 protein_coding protein_coding MGP_AJ_T0097336.1 MGP_AJ_G0036003.1 mouse_genomes_project X 106628437 106630251 + MGP_AJ_P0097336 protein_coding protein_coding MGP_AJ_T0016748.1 MGP_AJ_G0014843.1 mouse_genomes_project X 133953340 133953938 + processed_pseudogene processed_pseudogene MGP_AJ_T0101634.1 MGP_AJ_G0039600.1 mouse_genomes_project X 116002543 116002659 - Gm26182 snoRNA snoRNA MGP_AJ_T0011780.1 MGP_AJ_G0009902.1 mouse_genomes_project X 141724076 141724398 + Gm26024 misc_RNA misc_RNA MGP_AJ_T0016350.1 MGP_AJ_G0014445.1 mouse_genomes_project X 53184879 53186055 + processed_pseudogene processed_pseudogene MGP_AJ_T0095646.1 MGP_AJ_G0035511.1 mouse_genomes_project X 2508525 2512857 - MGP_AJ_P0095646 Eras protein_coding protein_coding MGP_AJ_T0011161.1 MGP_AJ_G0009283.1 mouse_genomes_project X 62548537 62548615 - Mir880 miRNA miRNA MGP_AJ_T0096649.1 MGP_AJ_G0035819.1 mouse_genomes_project X 70265907 70267022 + Taz protein_coding processed_transcript MGP_AJ_T0096650.1 MGP_AJ_G0035819.1 mouse_genomes_project X 70265907 70266972 + Taz protein_coding processed_transcript MGP_AJ_T0096651.1 MGP_AJ_G0035819.1 mouse_genomes_project X 70265915 70274258 + MGP_AJ_P0096651 Taz protein_coding unknown_likely_coding MGP_AJ_T0096652.1 MGP_AJ_G0035819.1 mouse_genomes_project X 70265944 70274258 + MGP_AJ_P0096652 Taz protein_coding unknown_likely_coding MGP_AJ_T0096653.1 MGP_AJ_G0035819.1 mouse_genomes_project X 70266803 70274258 + MGP_AJ_P0096653 Taz protein_coding protein_coding MGP_AJ_T0096654.1 MGP_AJ_G0035819.1 mouse_genomes_project X 70266856 70269994 + Taz protein_coding retained_intron MGP_AJ_T0096655.1 MGP_AJ_G0035819.1 mouse_genomes_project X 70266856 70272142 + Taz protein_coding retained_intron MGP_AJ_T0096656.1 MGP_AJ_G0035819.1 mouse_genomes_project X 70266856 70274255 + Taz protein_coding retained_intron MGP_AJ_T0096657.1 MGP_AJ_G0035819.1 mouse_genomes_project X 70266856 70274255 + MGP_AJ_P0096657 Taz protein_coding protein_coding MGP_AJ_T0096658.1 MGP_AJ_G0035819.1 mouse_genomes_project X 70266866 70272386 + Taz protein_coding retained_intron MGP_AJ_T0096659.1 MGP_AJ_G0035819.1 mouse_genomes_project X 70266866 70272811 + Taz protein_coding retained_intron MGP_AJ_T0096660.1 MGP_AJ_G0035819.1 mouse_genomes_project X 70266868 70274255 + MGP_AJ_P0096660 Taz protein_coding protein_coding MGP_AJ_T0096661.1 MGP_AJ_G0035819.1 mouse_genomes_project X 70266872 70268076 + Taz protein_coding retained_intron MGP_AJ_T0096662.1 MGP_AJ_G0035819.1 mouse_genomes_project X 70266878 70273265 + MGP_AJ_P0096662 Taz protein_coding protein_coding MGP_AJ_T0096663.1 MGP_AJ_G0035819.1 mouse_genomes_project X 70266895 70268421 + Taz protein_coding retained_intron MGP_AJ_T0096664.1 MGP_AJ_G0035819.1 mouse_genomes_project X 70267027 70272951 + Taz protein_coding retained_intron MGP_AJ_T0096665.1 MGP_AJ_G0035819.1 mouse_genomes_project X 70267114 70273507 + MGP_AJ_P0096665 Taz protein_coding protein_coding MGP_AJ_T0096666.1 MGP_AJ_G0035819.1 mouse_genomes_project X 70267188 70273592 + MGP_AJ_P0096666 Taz protein_coding protein_coding MGP_AJ_T0096667.1 MGP_AJ_G0035819.1 mouse_genomes_project X 70268043 70273455 + MGP_AJ_P0096667 Taz protein_coding protein_coding MGP_AJ_T0096668.1 MGP_AJ_G0035819.1 mouse_genomes_project X 70271771 70272716 + Taz protein_coding retained_intron MGP_AJ_T0096669.1 MGP_AJ_G0035819.1 mouse_genomes_project X 70272126 70273841 + MGP_AJ_P0096669 Taz protein_coding nonsense_mediated_decay MGP_AJ_T0096670.1 MGP_AJ_G0035819.1 mouse_genomes_project X 70272178 70273995 + MGP_AJ_P0096670 Taz protein_coding protein_coding MGP_AJ_T0096671.1 MGP_AJ_G0035819.1 mouse_genomes_project X 70272768 70273838 + MGP_AJ_P0096671 Taz protein_coding nonsense_mediated_decay MGP_AJ_T0096672.1 MGP_AJ_G0035819.1 mouse_genomes_project X 70272779 70273788 + Taz protein_coding retained_intron MGP_AJ_T0095898.1 MGP_AJ_G0035587.1 mouse_genomes_project X 16756303 16757961 - MGP_AJ_P0095898 Gm28269 protein_coding protein_coding MGP_AJ_T0101891.1 MGP_AJ_G0039761.1 mouse_genomes_project X 10080349 10081231 - transcribed_processed_pseudogene processed_transcript MGP_AJ_T0101892.1 MGP_AJ_G0039761.1 mouse_genomes_project X 10080596 10081145 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0018684.1 MGP_AJ_G0015772.1 mouse_genomes_project X 150025822 150062834 + 9530051G07Rik processed_transcript processed_transcript MGP_AJ_T0016613.1 MGP_AJ_G0014708.1 mouse_genomes_project X 101902905 101903642 - processed_pseudogene processed_pseudogene MGP_AJ_T0011756.1 MGP_AJ_G0009878.1 mouse_genomes_project X 48403921 48404228 + Gm23718 misc_RNA misc_RNA MGP_AJ_T0097612.1 MGP_AJ_G0036095.1 mouse_genomes_project X 135038574 135039990 - MGP_AJ_P0097612 Tex13a protein_coding protein_coding MGP_AJ_T0011182.1 MGP_AJ_G0009304.1 mouse_genomes_project X 70301614 70301682 + Mir7092 miRNA miRNA MGP_AJ_T0097387.1 MGP_AJ_G0036020.1 mouse_genomes_project X 111438396 111439327 + MGP_AJ_P0097387 Ube2dnl2 protein_coding protein_coding MGP_AJ_T0095711.1 MGP_AJ_G0035525.1 mouse_genomes_project X 3579831 3586077 + MGP_AJ_P0095711 protein_coding protein_coding MGP_AJ_T0096351.1 MGP_AJ_G0035757.1 mouse_genomes_project X 65100065 65628126 + MGP_AJ_P0096351 Aff2 protein_coding protein_coding MGP_AJ_T0096352.1 MGP_AJ_G0035757.1 mouse_genomes_project X 65100276 65296335 + Aff2 protein_coding processed_transcript MGP_AJ_T0096353.1 MGP_AJ_G0035757.1 mouse_genomes_project X 65100471 65543617 + Aff2 protein_coding processed_transcript MGP_AJ_T0096354.1 MGP_AJ_G0035757.1 mouse_genomes_project X 65616608 65626865 + Aff2 protein_coding retained_intron MGP_AJ_T0096956.1 MGP_AJ_G0035899.1 mouse_genomes_project X 91142409 91144900 + MGP_AJ_P0096956 Gspt2 protein_coding protein_coding MGP_AJ_T0096957.1 MGP_AJ_G0035899.1 mouse_genomes_project X 91142416 91150660 + MGP_AJ_P0096957 Gspt2 protein_coding nonsense_mediated_decay MGP_AJ_T0016633.1 MGP_AJ_G0014728.1 mouse_genomes_project X 105602463 105602619 + processed_pseudogene processed_pseudogene MGP_AJ_T0011144.1 MGP_AJ_G0009266.1 mouse_genomes_project X 48141968 48142053 - Mir542 miRNA miRNA MGP_AJ_T0096903.1 MGP_AJ_G0035885.1 mouse_genomes_project X 88088610 88092085 + MGP_AJ_P0096903 Gm14781 protein_coding protein_coding MGP_AJ_T0101899.1 MGP_AJ_G0039766.1 mouse_genomes_project X 68759377 68760276 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0101900.1 MGP_AJ_G0039766.1 mouse_genomes_project X 68759377 68760109 + transcribed_processed_pseudogene processed_transcript MGP_AJ_T0096465.1 MGP_AJ_G0035796.1 mouse_genomes_project X 69642051 69651407 + MGP_AJ_P0096465 Slc6a8 protein_coding protein_coding MGP_AJ_T0096466.1 MGP_AJ_G0035796.1 mouse_genomes_project X 69642608 69650194 + MGP_AJ_P0096466 Slc6a8 protein_coding protein_coding MGP_AJ_T0096467.1 MGP_AJ_G0035796.1 mouse_genomes_project X 69642690 69651410 + MGP_AJ_P0096467 Slc6a8 protein_coding protein_coding MGP_AJ_T0096468.1 MGP_AJ_G0035796.1 mouse_genomes_project X 69642820 69646228 + Slc6a8 protein_coding retained_intron MGP_AJ_T0096469.1 MGP_AJ_G0035796.1 mouse_genomes_project X 69644408 69646247 + MGP_AJ_P0096469 Slc6a8 protein_coding protein_coding MGP_AJ_T0096470.1 MGP_AJ_G0035796.1 mouse_genomes_project X 69645748 69651407 + MGP_AJ_P0096470 Slc6a8 protein_coding nonsense_mediated_decay MGP_AJ_T0096471.1 MGP_AJ_G0035796.1 mouse_genomes_project X 69645961 69648671 + Slc6a8 protein_coding retained_intron MGP_AJ_T0096472.1 MGP_AJ_G0035796.1 mouse_genomes_project X 69647056 69650003 + Slc6a8 protein_coding retained_intron MGP_AJ_T0096473.1 MGP_AJ_G0035796.1 mouse_genomes_project X 69647780 69648902 + Slc6a8 protein_coding processed_transcript MGP_AJ_T0096474.1 MGP_AJ_G0035796.1 mouse_genomes_project X 69647795 69648818 + Slc6a8 protein_coding retained_intron MGP_AJ_T0096475.1 MGP_AJ_G0035796.1 mouse_genomes_project X 69647795 69648905 + Slc6a8 protein_coding retained_intron MGP_AJ_T0097132.1 MGP_AJ_G0035945.1 mouse_genomes_project X 97915335 97932657 - MGP_AJ_P0097132 Zmym3 protein_coding protein_coding MGP_AJ_T0097133.1 MGP_AJ_G0035945.1 mouse_genomes_project X 97915335 97932790 - MGP_AJ_P0097133 Zmym3 protein_coding protein_coding MGP_AJ_T0097134.1 MGP_AJ_G0035945.1 mouse_genomes_project X 97915335 97931855 - MGP_AJ_P0097134 Zmym3 protein_coding protein_coding MGP_AJ_T0097135.1 MGP_AJ_G0035945.1 mouse_genomes_project X 97915335 97931739 - MGP_AJ_P0097135 Zmym3 protein_coding protein_coding MGP_AJ_T0097136.1 MGP_AJ_G0035945.1 mouse_genomes_project X 97916930 97920686 - Zmym3 protein_coding processed_transcript MGP_AJ_T0097137.1 MGP_AJ_G0035945.1 mouse_genomes_project X 97924195 97925980 - Zmym3 protein_coding retained_intron MGP_AJ_T0097138.1 MGP_AJ_G0035945.1 mouse_genomes_project X 97925261 97928538 - Zmym3 protein_coding processed_transcript MGP_AJ_T0097139.1 MGP_AJ_G0035945.1 mouse_genomes_project X 97925569 97926227 - Zmym3 protein_coding retained_intron MGP_AJ_T0097140.1 MGP_AJ_G0035945.1 mouse_genomes_project X 97925989 97928437 - Zmym3 protein_coding retained_intron MGP_AJ_T0097141.1 MGP_AJ_G0035945.1 mouse_genomes_project X 97925990 97931750 - MGP_AJ_P0097141 Zmym3 protein_coding protein_coding MGP_AJ_T0097142.1 MGP_AJ_G0035945.1 mouse_genomes_project X 97925993 97931782 - MGP_AJ_P0097142 Zmym3 protein_coding protein_coding MGP_AJ_T0097143.1 MGP_AJ_G0035945.1 mouse_genomes_project X 97925993 97932626 - MGP_AJ_P0097143 Zmym3 protein_coding protein_coding MGP_AJ_T0097144.1 MGP_AJ_G0035945.1 mouse_genomes_project X 97925998 97932157 - MGP_AJ_P0097144 Zmym3 protein_coding protein_coding MGP_AJ_T0097145.1 MGP_AJ_G0035945.1 mouse_genomes_project X 97926018 97932305 - MGP_AJ_P0097145 Zmym3 protein_coding protein_coding MGP_AJ_T0097146.1 MGP_AJ_G0035945.1 mouse_genomes_project X 97926075 97928434 - Zmym3 protein_coding retained_intron MGP_AJ_T0097147.1 MGP_AJ_G0035945.1 mouse_genomes_project X 97927247 97931770 - Zmym3 protein_coding processed_transcript MGP_AJ_T0097148.1 MGP_AJ_G0035945.1 mouse_genomes_project X 97927334 97928751 - Zmym3 protein_coding retained_intron MGP_AJ_T0097149.1 MGP_AJ_G0035945.1 mouse_genomes_project X 97927443 97931801 - MGP_AJ_P0097149 Zmym3 protein_coding protein_coding MGP_AJ_T0016215.1 MGP_AJ_G0014310.1 mouse_genomes_project X 5554120 5554553 - processed_pseudogene processed_pseudogene MGP_AJ_T0009434.1 MGP_AJ_G0007566.1 mouse_genomes_project X 141015830 141029430 + lincRNA lincRNA MGP_AJ_T0096275.1 MGP_AJ_G0035729.1 mouse_genomes_project X 52733633 52747033 + MGP_AJ_P0096275 Cd40lg protein_coding protein_coding MGP_AJ_T0098001.1 MGP_AJ_G0036193.1 mouse_genomes_project X 156388419 156546206 + MGP_AJ_P0098001 Rps6ka3 protein_coding protein_coding MGP_AJ_T0098002.1 MGP_AJ_G0036193.1 mouse_genomes_project X 156437011 156493438 + MGP_AJ_P0098002 Rps6ka3 protein_coding protein_coding MGP_AJ_T0098003.1 MGP_AJ_G0036193.1 mouse_genomes_project X 156437052 156549948 + MGP_AJ_P0098003 Rps6ka3 protein_coding protein_coding MGP_AJ_T0098004.1 MGP_AJ_G0036193.1 mouse_genomes_project X 156437118 156508722 + MGP_AJ_P0098004 Rps6ka3 protein_coding protein_coding MGP_AJ_T0098005.1 MGP_AJ_G0036193.1 mouse_genomes_project X 156437319 156508812 + MGP_AJ_P0098005 Rps6ka3 protein_coding protein_coding MGP_AJ_T0098006.1 MGP_AJ_G0036193.1 mouse_genomes_project X 156458487 156507252 + MGP_AJ_P0098006 Rps6ka3 protein_coding protein_coding MGP_AJ_T0098007.1 MGP_AJ_G0036193.1 mouse_genomes_project X 156483919 156511225 + MGP_AJ_P0098007 Rps6ka3 protein_coding protein_coding MGP_AJ_T0098008.1 MGP_AJ_G0036193.1 mouse_genomes_project X 156544024 156545209 + Rps6ka3 protein_coding processed_transcript MGP_AJ_T0098009.1 MGP_AJ_G0036193.1 mouse_genomes_project X 156544109 156545444 + Rps6ka3 protein_coding retained_intron MGP_AJ_T0097451.1 MGP_AJ_G0036046.1 mouse_genomes_project X 130808078 130864107 - MGP_AJ_P0097451 Trmt2b protein_coding nonsense_mediated_decay MGP_AJ_T0097452.1 MGP_AJ_G0036046.1 mouse_genomes_project X 130808834 130864107 - MGP_AJ_P0097452 Trmt2b protein_coding protein_coding MGP_AJ_T0097453.1 MGP_AJ_G0036046.1 mouse_genomes_project X 130808835 130864052 - Trmt2b protein_coding retained_intron MGP_AJ_T0097454.1 MGP_AJ_G0036046.1 mouse_genomes_project X 130808839 130864045 - MGP_AJ_P0097454 Trmt2b protein_coding protein_coding MGP_AJ_T0097455.1 MGP_AJ_G0036046.1 mouse_genomes_project X 130849549 130864109 - MGP_AJ_P0097455 Trmt2b protein_coding protein_coding MGP_AJ_T0016651.1 MGP_AJ_G0014746.1 mouse_genomes_project X 109351561 109353135 + processed_pseudogene processed_pseudogene MGP_AJ_T0016759.1 MGP_AJ_G0014854.1 mouse_genomes_project X 136563871 136566830 - processed_pseudogene processed_pseudogene MGP_AJ_T0097325.1 MGP_AJ_G0035999.1 mouse_genomes_project X 105439637 105541230 - MGP_AJ_P0097325 Brwd3 protein_coding protein_coding MGP_AJ_T0097326.1 MGP_AJ_G0035999.1 mouse_genomes_project X 105445188 105541254 - MGP_AJ_P0097326 Brwd3 protein_coding nonsense_mediated_decay MGP_AJ_T0097327.1 MGP_AJ_G0035999.1 mouse_genomes_project X 105445188 105541254 - MGP_AJ_P0097327 Brwd3 protein_coding nonsense_mediated_decay MGP_AJ_T0097328.1 MGP_AJ_G0035999.1 mouse_genomes_project X 105509972 105541222 - Brwd3 protein_coding retained_intron MGP_AJ_T0097329.1 MGP_AJ_G0035999.1 mouse_genomes_project X 105527363 105541228 - MGP_AJ_P0097329 Brwd3 protein_coding protein_coding MGP_AJ_T0009371.1 MGP_AJ_G0007524.1 mouse_genomes_project X 10863521 10877717 - Drr1 lincRNA lincRNA MGP_AJ_T0009372.1 MGP_AJ_G0007524.1 mouse_genomes_project X 10863521 10866195 - Drr1 lincRNA lincRNA MGP_AJ_T0097322.1 MGP_AJ_G0035997.1 mouse_genomes_project X 104614741 104617447 - MGP_AJ_P0097322 Gm732 protein_coding protein_coding MGP_AJ_T0097323.1 MGP_AJ_G0035997.1 mouse_genomes_project X 104615882 104617476 - MGP_AJ_P0097323 Gm732 protein_coding protein_coding MGP_AJ_T0016897.1 MGP_AJ_G0014992.1 mouse_genomes_project X 163286884 163287272 - processed_pseudogene processed_pseudogene MGP_AJ_T0016497.1 MGP_AJ_G0014592.1 mouse_genomes_project X 84906754 84907225 + processed_pseudogene processed_pseudogene MGP_AJ_T0016192.1 MGP_AJ_G0014287.1 mouse_genomes_project X 455318 457139 - processed_pseudogene processed_pseudogene MGP_AJ_T0016481.1 MGP_AJ_G0014576.1 mouse_genomes_project X 81399516 81400631 + processed_pseudogene processed_pseudogene MGP_AJ_T0096857.1 MGP_AJ_G0035868.1 mouse_genomes_project X 77224390 77248653 + Tmem47 protein_coding processed_transcript MGP_AJ_T0096858.1 MGP_AJ_G0035868.1 mouse_genomes_project X 77224397 77249608 + MGP_AJ_P0096858 Tmem47 protein_coding protein_coding MGP_AJ_T0096859.1 MGP_AJ_G0035868.1 mouse_genomes_project X 77224408 77251758 + MGP_AJ_P0096859 Tmem47 protein_coding protein_coding MGP_AJ_T0097973.1 MGP_AJ_G0036186.1 mouse_genomes_project X 154336131 154619241 - MGP_AJ_P0097973 Phex protein_coding protein_coding MGP_AJ_T0097974.1 MGP_AJ_G0036186.1 mouse_genomes_project X 154339636 154607260 - MGP_AJ_P0097974 Phex protein_coding protein_coding MGP_AJ_T0097975.1 MGP_AJ_G0036186.1 mouse_genomes_project X 154394776 154619267 - MGP_AJ_P0097975 Phex protein_coding protein_coding MGP_AJ_T0097852.1 MGP_AJ_G0036154.1 mouse_genomes_project X 148472365 148572101 + MGP_AJ_P0097852 Phf8 protein_coding protein_coding MGP_AJ_T0097853.1 MGP_AJ_G0036154.1 mouse_genomes_project X 148472365 148580318 + MGP_AJ_P0097853 Phf8 protein_coding protein_coding MGP_AJ_T0097854.1 MGP_AJ_G0036154.1 mouse_genomes_project X 148472365 148523038 + MGP_AJ_P0097854 Phf8 protein_coding protein_coding MGP_AJ_T0097855.1 MGP_AJ_G0036154.1 mouse_genomes_project X 148472862 148546845 + MGP_AJ_P0097855 Phf8 protein_coding protein_coding MGP_AJ_T0097856.1 MGP_AJ_G0036154.1 mouse_genomes_project X 148472874 148572101 + MGP_AJ_P0097856 Phf8 protein_coding protein_coding MGP_AJ_T0097857.1 MGP_AJ_G0036154.1 mouse_genomes_project X 148472880 148580320 + MGP_AJ_P0097857 Phf8 protein_coding protein_coding MGP_AJ_T0097858.1 MGP_AJ_G0036154.1 mouse_genomes_project X 148472880 148534366 + MGP_AJ_P0097858 Phf8 protein_coding protein_coding MGP_AJ_T0097859.1 MGP_AJ_G0036154.1 mouse_genomes_project X 148474689 148503052 + MGP_AJ_P0097859 Phf8 protein_coding protein_coding MGP_AJ_T0097860.1 MGP_AJ_G0036154.1 mouse_genomes_project X 148506572 148508796 + Phf8 protein_coding retained_intron MGP_AJ_T0097861.1 MGP_AJ_G0036154.1 mouse_genomes_project X 148518267 148528066 + MGP_AJ_P0097861 Phf8 protein_coding protein_coding MGP_AJ_T0097862.1 MGP_AJ_G0036154.1 mouse_genomes_project X 148576277 148580320 + Phf8 protein_coding retained_intron MGP_AJ_T0016660.1 MGP_AJ_G0014755.1 mouse_genomes_project X 110767951 110768690 + processed_pseudogene processed_pseudogene MGP_AJ_T0097035.1 MGP_AJ_G0035920.1 mouse_genomes_project X 95610547 95623370 + MGP_AJ_P0097035 Efnb1 protein_coding protein_coding MGP_AJ_T0097036.1 MGP_AJ_G0035920.1 mouse_genomes_project X 95612543 95621611 + Efnb1 protein_coding processed_transcript MGP_AJ_T0098196.1 MGP_AJ_G0036240.1 mouse_genomes_project X 164614446 164639938 - MGP_AJ_P0098196 Tlr7 protein_coding protein_coding MGP_AJ_T0098197.1 MGP_AJ_G0036240.1 mouse_genomes_project X 164614448 164639968 - MGP_AJ_P0098197 Tlr7 protein_coding protein_coding MGP_AJ_T0098198.1 MGP_AJ_G0036240.1 mouse_genomes_project X 164614731 164639907 - MGP_AJ_P0098198 Tlr7 protein_coding protein_coding MGP_AJ_T0098199.1 MGP_AJ_G0036240.1 mouse_genomes_project X 164617859 164639901 - MGP_AJ_P0098199 Tlr7 protein_coding protein_coding MGP_AJ_T0098200.1 MGP_AJ_G0036240.1 mouse_genomes_project X 164617873 164639920 - MGP_AJ_P0098200 Tlr7 protein_coding protein_coding MGP_AJ_T0098201.1 MGP_AJ_G0036240.1 mouse_genomes_project X 164627102 164639853 - Tlr7 protein_coding processed_transcript MGP_AJ_T0101626.1 MGP_AJ_G0039592.1 mouse_genomes_project X 78792271 78792403 - Gm24470 snoRNA snoRNA MGP_AJ_T0016859.1 MGP_AJ_G0014954.1 mouse_genomes_project X 154877205 154877539 + processed_pseudogene processed_pseudogene MGP_AJ_T0095995.1 MGP_AJ_G0035636.1 mouse_genomes_project X 32735845 32739984 - MGP_AJ_P0095995 Rhox2h protein_coding protein_coding MGP_AJ_T0097951.1 MGP_AJ_G0036178.1 mouse_genomes_project X 151579153 151581834 + MGP_AJ_P0097951 Samt4 protein_coding protein_coding MGP_AJ_T0018639.1 MGP_AJ_G0015760.1 mouse_genomes_project X 97239710 97243774 - Gm14866 processed_transcript processed_transcript MGP_AJ_T0096420.1 MGP_AJ_G0035777.1 mouse_genomes_project X 68335973 68543613 - MGP_AJ_P0096420 Gabra3 protein_coding protein_coding MGP_AJ_T0096421.1 MGP_AJ_G0035777.1 mouse_genomes_project X 68337867 68544474 - MGP_AJ_P0096421 Gabra3 protein_coding protein_coding MGP_AJ_T0096422.1 MGP_AJ_G0035777.1 mouse_genomes_project X 68405803 68543650 - Gabra3 protein_coding processed_transcript MGP_AJ_T0096158.1 MGP_AJ_G0035682.1 mouse_genomes_project X 43864581 43900856 - MGP_AJ_P0096158 Gm595 protein_coding protein_coding MGP_AJ_T0100385.1 MGP_AJ_G0038351.1 mouse_genomes_project X 150582806 150582913 - Gm25793 snRNA snRNA MGP_AJ_T0016359.1 MGP_AJ_G0014454.1 mouse_genomes_project X 55417805 55418862 - processed_pseudogene processed_pseudogene MGP_AJ_T0011212.1 MGP_AJ_G0009334.1 mouse_genomes_project X 141931734 141931805 + Mir3472 miRNA miRNA MGP_AJ_T0016566.1 MGP_AJ_G0014661.1 mouse_genomes_project X 96650991 96651313 + processed_pseudogene processed_pseudogene MGP_AJ_T0095769.1 MGP_AJ_G0035548.1 mouse_genomes_project X 8009001 8063764 + MGP_AJ_P0095769 protein_coding protein_coding MGP_AJ_T0095770.1 MGP_AJ_G0035548.1 mouse_genomes_project X 8009017 8062476 + protein_coding retained_intron MGP_AJ_T0095771.1 MGP_AJ_G0035548.1 mouse_genomes_project X 8009493 8128757 + MGP_AJ_P0095771 protein_coding unknown_likely_coding MGP_AJ_T0095772.1 MGP_AJ_G0035548.1 mouse_genomes_project X 8053997 8063548 + MGP_AJ_P0095772 protein_coding protein_coding MGP_AJ_T0095773.1 MGP_AJ_G0035548.1 mouse_genomes_project X 8069483 8072917 + protein_coding retained_intron MGP_AJ_T0095774.1 MGP_AJ_G0035548.1 mouse_genomes_project X 8069750 8074129 + protein_coding retained_intron MGP_AJ_T0095775.1 MGP_AJ_G0035548.1 mouse_genomes_project X 8102620 8123523 + MGP_AJ_P0095775 protein_coding protein_coding MGP_AJ_T0096415.1 MGP_AJ_G0035774.1 mouse_genomes_project X 68130023 68130971 + MGP_AJ_P0096415 Magea4 protein_coding protein_coding MGP_AJ_T0095549.1 MGP_AJ_G0035493.1 mouse_genomes_project X 2211984 2228064 + MGP_AJ_P0095549 Syp protein_coding protein_coding MGP_AJ_T0095550.1 MGP_AJ_G0035493.1 mouse_genomes_project X 2212782 2221375 + Syp protein_coding retained_intron MGP_AJ_T0095551.1 MGP_AJ_G0035493.1 mouse_genomes_project X 2212866 2218300 + MGP_AJ_P0095551 Syp protein_coding protein_coding MGP_AJ_T0095552.1 MGP_AJ_G0035493.1 mouse_genomes_project X 2213449 2218289 + Syp protein_coding processed_transcript MGP_AJ_T0095553.1 MGP_AJ_G0035493.1 mouse_genomes_project X 2213905 2218248 + Syp protein_coding retained_intron MGP_AJ_T0095554.1 MGP_AJ_G0035493.1 mouse_genomes_project X 2217914 2219039 + Syp protein_coding retained_intron MGP_AJ_T0100343.1 MGP_AJ_G0038309.1 mouse_genomes_project X 53922181 53922288 - Gm25851 snRNA snRNA MGP_AJ_T0096311.1 MGP_AJ_G0035739.1 mouse_genomes_project X 55782598 56163382 - MGP_AJ_P0096311 Atp11c protein_coding protein_coding MGP_AJ_T0096312.1 MGP_AJ_G0035739.1 mouse_genomes_project X 55782601 55963900 - MGP_AJ_P0096312 Atp11c protein_coding protein_coding MGP_AJ_T0096313.1 MGP_AJ_G0035739.1 mouse_genomes_project X 55782601 55963900 - MGP_AJ_P0096313 Atp11c protein_coding protein_coding MGP_AJ_T0096314.1 MGP_AJ_G0035739.1 mouse_genomes_project X 55784931 55826321 - Atp11c protein_coding processed_transcript MGP_AJ_T0096315.1 MGP_AJ_G0035739.1 mouse_genomes_project X 55795291 56163382 - Atp11c protein_coding processed_transcript MGP_AJ_T0011781.1 MGP_AJ_G0009903.1 mouse_genomes_project X 149913352 149913662 - Gm26035 misc_RNA misc_RNA MGP_AJ_T0005615.1 MGP_AJ_G0004728.1 mouse_genomes_project X 157722189 157727437 - Gm15243 antisense antisense MGP_AJ_T0097714.1 MGP_AJ_G0036130.1 mouse_genomes_project X 140012264 140016934 + MGP_AJ_P0097714 Rgag1 protein_coding protein_coding MGP_AJ_T0096995.1 MGP_AJ_G0035911.1 mouse_genomes_project X 92835970 92981434 - MGP_AJ_P0096995 Hsf3 protein_coding protein_coding MGP_AJ_T0096996.1 MGP_AJ_G0035911.1 mouse_genomes_project X 92836659 92882814 - MGP_AJ_P0096996 Hsf3 protein_coding protein_coding MGP_AJ_T0096997.1 MGP_AJ_G0035911.1 mouse_genomes_project X 92837157 92981423 - MGP_AJ_P0096997 Hsf3 protein_coding protein_coding MGP_AJ_T0096998.1 MGP_AJ_G0035911.1 mouse_genomes_project X 92837315 92894066 - MGP_AJ_P0096998 Hsf3 protein_coding protein_coding MGP_AJ_T0096999.1 MGP_AJ_G0035911.1 mouse_genomes_project X 92850602 92868219 - Hsf3 protein_coding retained_intron MGP_AJ_T0097819.1 MGP_AJ_G0036148.1 mouse_genomes_project X 147727140 147735107 - MGP_AJ_P0097819 Maged2 protein_coding protein_coding MGP_AJ_T0097820.1 MGP_AJ_G0036148.1 mouse_genomes_project X 147727191 147733723 - Maged2 protein_coding retained_intron MGP_AJ_T0097821.1 MGP_AJ_G0036148.1 mouse_genomes_project X 147727191 147734469 - MGP_AJ_P0097821 Maged2 protein_coding protein_coding MGP_AJ_T0097822.1 MGP_AJ_G0036148.1 mouse_genomes_project X 147727194 147735031 - MGP_AJ_P0097822 Maged2 protein_coding protein_coding MGP_AJ_T0097823.1 MGP_AJ_G0036148.1 mouse_genomes_project X 147727487 147733470 - MGP_AJ_P0097823 Maged2 protein_coding protein_coding MGP_AJ_T0097824.1 MGP_AJ_G0036148.1 mouse_genomes_project X 147731628 147733840 - MGP_AJ_P0097824 Maged2 protein_coding protein_coding MGP_AJ_T0097825.1 MGP_AJ_G0036148.1 mouse_genomes_project X 147731645 147733916 - MGP_AJ_P0097825 Maged2 protein_coding protein_coding MGP_AJ_T0097826.1 MGP_AJ_G0036148.1 mouse_genomes_project X 147731854 147733216 - Maged2 protein_coding processed_transcript MGP_AJ_T0097827.1 MGP_AJ_G0036148.1 mouse_genomes_project X 147731892 147735043 - MGP_AJ_P0097827 Maged2 protein_coding protein_coding MGP_AJ_T0097828.1 MGP_AJ_G0036148.1 mouse_genomes_project X 147732629 147733713 - MGP_AJ_P0097828 Maged2 protein_coding protein_coding MGP_AJ_T0095745.1 MGP_AJ_G0035541.1 mouse_genomes_project X 5340048 5448665 + Tspan7 protein_coding retained_intron MGP_AJ_T0095746.1 MGP_AJ_G0035541.1 mouse_genomes_project X 5340048 5448665 + MGP_AJ_P0095746 Tspan7 protein_coding protein_coding MGP_AJ_T0095747.1 MGP_AJ_G0035541.1 mouse_genomes_project X 5340048 5448665 + MGP_AJ_P0095747 Tspan7 protein_coding protein_coding MGP_AJ_T0102929.1 MGP_AJ_G0040669.1 mouse_genomes_project X 3889481 3889994 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0095661.1 MGP_AJ_G0035515.1 mouse_genomes_project X 2681570 2696885 - MGP_AJ_P0095661 Suv39h1 protein_coding protein_coding MGP_AJ_T0095662.1 MGP_AJ_G0035515.1 mouse_genomes_project X 2681825 2696746 - Suv39h1 protein_coding retained_intron MGP_AJ_T0095663.1 MGP_AJ_G0035515.1 mouse_genomes_project X 2681834 2696383 - MGP_AJ_P0095663 Suv39h1 protein_coding protein_coding MGP_AJ_T0095664.1 MGP_AJ_G0035515.1 mouse_genomes_project X 2687808 2696854 - MGP_AJ_P0095664 Suv39h1 protein_coding protein_coding MGP_AJ_T0095665.1 MGP_AJ_G0035515.1 mouse_genomes_project X 2691880 2696438 - Suv39h1 protein_coding retained_intron MGP_AJ_T0016830.1 MGP_AJ_G0014925.1 mouse_genomes_project X 150100857 150101389 - processed_pseudogene processed_pseudogene MGP_AJ_T0096366.1 MGP_AJ_G0035764.1 mouse_genomes_project X 67064611 67183321 + MGP_AJ_P0096366 Mtm1 protein_coding protein_coding MGP_AJ_T0096367.1 MGP_AJ_G0035764.1 mouse_genomes_project X 67068762 67183321 + MGP_AJ_P0096367 Mtm1 protein_coding protein_coding MGP_AJ_T0096368.1 MGP_AJ_G0035764.1 mouse_genomes_project X 67068762 67183321 + MGP_AJ_P0096368 Mtm1 protein_coding protein_coding MGP_AJ_T0096369.1 MGP_AJ_G0035764.1 mouse_genomes_project X 67068762 67118488 + MGP_AJ_P0096369 Mtm1 protein_coding protein_coding MGP_AJ_T0096370.1 MGP_AJ_G0035764.1 mouse_genomes_project X 67068784 67183314 + MGP_AJ_P0096370 Mtm1 protein_coding protein_coding MGP_AJ_T0096371.1 MGP_AJ_G0035764.1 mouse_genomes_project X 67068787 67163289 + Mtm1 protein_coding retained_intron MGP_AJ_T0096372.1 MGP_AJ_G0035764.1 mouse_genomes_project X 67068792 67159196 + Mtm1 protein_coding retained_intron MGP_AJ_T0096373.1 MGP_AJ_G0035764.1 mouse_genomes_project X 67068795 67183291 + MGP_AJ_P0096373 Mtm1 protein_coding protein_coding MGP_AJ_T0096374.1 MGP_AJ_G0035764.1 mouse_genomes_project X 67068815 67178339 + Mtm1 protein_coding retained_intron MGP_AJ_T0096375.1 MGP_AJ_G0035764.1 mouse_genomes_project X 67068838 67183291 + MGP_AJ_P0096375 Mtm1 protein_coding protein_coding MGP_AJ_T0096376.1 MGP_AJ_G0035764.1 mouse_genomes_project X 67068841 67090444 + Mtm1 protein_coding retained_intron MGP_AJ_T0096377.1 MGP_AJ_G0035764.1 mouse_genomes_project X 67068841 67114184 + Mtm1 protein_coding retained_intron MGP_AJ_T0096378.1 MGP_AJ_G0035764.1 mouse_genomes_project X 67165796 67183717 + Mtm1 protein_coding retained_intron MGP_AJ_T0097173.1 MGP_AJ_G0035950.1 mouse_genomes_project X 98252051 98254786 - MGP_AJ_P0097173 Cxcr3 protein_coding protein_coding MGP_AJ_T0011176.1 MGP_AJ_G0009298.1 mouse_genomes_project X 68485658 68485765 - Mir767 miRNA miRNA MGP_AJ_T0097844.1 MGP_AJ_G0036152.1 mouse_genomes_project X 148121619 148264628 + MGP_AJ_P0097844 Wnk3 protein_coding unknown_likely_coding MGP_AJ_T0097845.1 MGP_AJ_G0036152.1 mouse_genomes_project X 148150789 148259655 + MGP_AJ_P0097845 Wnk3 protein_coding protein_coding MGP_AJ_T0097846.1 MGP_AJ_G0036152.1 mouse_genomes_project X 148150851 148259597 + MGP_AJ_P0097846 Wnk3 protein_coding nonsense_mediated_decay MGP_AJ_T0097847.1 MGP_AJ_G0036152.1 mouse_genomes_project X 148150851 148262774 + MGP_AJ_P0097847 Wnk3 protein_coding protein_coding MGP_AJ_T0097848.1 MGP_AJ_G0036152.1 mouse_genomes_project X 148160762 148180275 + Wnk3 protein_coding processed_transcript MGP_AJ_T0097849.1 MGP_AJ_G0036152.1 mouse_genomes_project X 148239261 148264618 + Wnk3 protein_coding processed_transcript MGP_AJ_T0016274.1 MGP_AJ_G0014369.1 mouse_genomes_project X 31211627 31212233 - processed_pseudogene processed_pseudogene MGP_AJ_T0101901.1 MGP_AJ_G0039767.1 mouse_genomes_project X 85326609 85327184 + transcribed_processed_pseudogene processed_transcript MGP_AJ_T0101902.1 MGP_AJ_G0039767.1 mouse_genomes_project X 85326662 85327001 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0016867.1 MGP_AJ_G0014962.1 mouse_genomes_project X 156298964 156301541 + processed_pseudogene processed_pseudogene MGP_AJ_T0100378.1 MGP_AJ_G0038344.1 mouse_genomes_project X 135258004 135258109 - Gm23958 snRNA snRNA MGP_AJ_T0097929.1 MGP_AJ_G0036166.1 mouse_genomes_project X 149994629 149997577 + MGP_AJ_P0097929 Usp51 protein_coding protein_coding MGP_AJ_T0095761.1 MGP_AJ_G0035545.1 mouse_genomes_project X 7510105 7538327 + MGP_AJ_P0095761 Atp6ap2 protein_coding protein_coding MGP_AJ_T0095762.1 MGP_AJ_G0035545.1 mouse_genomes_project X 7510165 7518946 + Atp6ap2 protein_coding retained_intron MGP_AJ_T0016289.1 MGP_AJ_G0014384.1 mouse_genomes_project X 35030874 35031545 + processed_pseudogene processed_pseudogene MGP_AJ_T0095897.1 MGP_AJ_G0035586.1 mouse_genomes_project X 16727961 16755219 + MGP_AJ_P0095897 Slc6a14 protein_coding protein_coding MGP_AJ_T0016196.1 MGP_AJ_G0014291.1 mouse_genomes_project X 2085769 2086183 - processed_pseudogene processed_pseudogene MGP_AJ_T0016803.1 MGP_AJ_G0014898.1 mouse_genomes_project X 142712532 142713350 + processed_pseudogene processed_pseudogene MGP_AJ_T0016689.1 MGP_AJ_G0014784.1 mouse_genomes_project X 116659833 116660288 + processed_pseudogene processed_pseudogene MGP_AJ_T0097094.1 MGP_AJ_G0035936.1 mouse_genomes_project X 97576699 97584994 - Slc7a3 protein_coding retained_intron MGP_AJ_T0097095.1 MGP_AJ_G0035936.1 mouse_genomes_project X 97576711 97584941 - MGP_AJ_P0097095 Slc7a3 protein_coding protein_coding MGP_AJ_T0097096.1 MGP_AJ_G0035936.1 mouse_genomes_project X 97576712 97583524 - MGP_AJ_P0097096 Slc7a3 protein_coding protein_coding MGP_AJ_T0097097.1 MGP_AJ_G0035936.1 mouse_genomes_project X 97576712 97584961 - MGP_AJ_P0097097 Slc7a3 protein_coding protein_coding MGP_AJ_T0097098.1 MGP_AJ_G0035936.1 mouse_genomes_project X 97577296 97581684 - Slc7a3 protein_coding processed_transcript MGP_AJ_T0097099.1 MGP_AJ_G0035936.1 mouse_genomes_project X 97579074 97579738 - Slc7a3 protein_coding retained_intron MGP_AJ_T0097100.1 MGP_AJ_G0035936.1 mouse_genomes_project X 97579262 97579964 - Slc7a3 protein_coding retained_intron MGP_AJ_T0016426.1 MGP_AJ_G0014521.1 mouse_genomes_project X 69984906 69985707 + processed_pseudogene processed_pseudogene MGP_AJ_T0100353.1 MGP_AJ_G0038319.1 mouse_genomes_project X 78308869 78308969 + Gm22686 snRNA snRNA MGP_AJ_T0096980.1 MGP_AJ_G0035906.1 mouse_genomes_project X 92267779 92473303 + Zc3h12b protein_coding processed_transcript MGP_AJ_T0096982.1 MGP_AJ_G0035906.1 mouse_genomes_project X 92449571 92476515 + MGP_AJ_P0096982 Zc3h12b protein_coding protein_coding MGP_AJ_T0096983.1 MGP_AJ_G0035906.1 mouse_genomes_project X 92450376 92481499 + MGP_AJ_P0096983 Zc3h12b protein_coding nonsense_mediated_decay MGP_AJ_T0095960.1 MGP_AJ_G0035610.1 mouse_genomes_project X 32163431 32182986 - MGP_AJ_P0095960 Akap14 protein_coding protein_coding MGP_AJ_T0096155.1 MGP_AJ_G0035680.1 mouse_genomes_project X 43700662 43707146 - MGP_AJ_P0096155 Gpr119 protein_coding protein_coding MGP_AJ_T0011142.1 MGP_AJ_G0009264.1 mouse_genomes_project X 48140724 48140815 - Mir450-1 miRNA miRNA MGP_AJ_T0011754.1 MGP_AJ_G0009876.1 mouse_genomes_project X 32071842 32072113 - Gm24809 misc_RNA misc_RNA MGP_AJ_T0101605.1 MGP_AJ_G0039571.1 mouse_genomes_project X 1792598 1792674 + Gm26401 snoRNA snoRNA MGP_AJ_T0095912.1 MGP_AJ_G0035592.1 mouse_genomes_project X 30885237 31072451 + MGP_AJ_P0095912 Dock11 protein_coding protein_coding MGP_AJ_T0095913.1 MGP_AJ_G0035592.1 mouse_genomes_project X 30940554 31072445 + MGP_AJ_P0095913 Dock11 protein_coding protein_coding MGP_AJ_T0095914.1 MGP_AJ_G0035592.1 mouse_genomes_project X 30969334 30978286 + Dock11 protein_coding retained_intron MGP_AJ_T0095915.1 MGP_AJ_G0035592.1 mouse_genomes_project X 31006685 31012096 + Dock11 protein_coding retained_intron MGP_AJ_T0095916.1 MGP_AJ_G0035592.1 mouse_genomes_project X 31036898 31072116 + MGP_AJ_P0095916 Dock11 protein_coding protein_coding MGP_AJ_T0101639.1 MGP_AJ_G0039605.1 mouse_genomes_project X 127420526 127420655 - Gm25170 snoRNA snoRNA MGP_AJ_T0102960.1 MGP_AJ_G0040700.1 mouse_genomes_project X 91305565 91308193 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0016391.1 MGP_AJ_G0014486.1 mouse_genomes_project X 60783571 60783821 - processed_pseudogene processed_pseudogene MGP_AJ_T0097698.1 MGP_AJ_G0036121.1 mouse_genomes_project X 138591850 138605982 - MGP_AJ_P0097698 Irs4 protein_coding protein_coding MGP_AJ_T0096091.1 MGP_AJ_G0035662.1 mouse_genomes_project X 38625762 38628135 + MGP_AJ_P0096091 Gm362 protein_coding protein_coding MGP_AJ_T0097062.1 MGP_AJ_G0035929.1 mouse_genomes_project X 97093080 97098152 - MGP_AJ_P0097062 P2ry4 protein_coding protein_coding MGP_AJ_T0016691.1 MGP_AJ_G0014786.1 mouse_genomes_project X 116854914 116855370 + processed_pseudogene processed_pseudogene MGP_AJ_T0011126.1 MGP_AJ_G0009248.1 mouse_genomes_project X 33215838 33215918 + Mir3110 miRNA miRNA MGP_AJ_T0101622.1 MGP_AJ_G0039588.1 mouse_genomes_project X 71967566 71967693 + Gm23320 snoRNA snoRNA MGP_AJ_T0096834.1 MGP_AJ_G0035860.1 mouse_genomes_project X 74040709 74048045 - MGP_AJ_P0096834 protein_coding protein_coding MGP_AJ_T0016793.1 MGP_AJ_G0014888.1 mouse_genomes_project X 141188119 141188449 - processed_pseudogene processed_pseudogene MGP_AJ_T0096905.1 MGP_AJ_G0035887.1 mouse_genomes_project X 88612513 89090676 - MGP_AJ_P0096905 Mageb18 protein_coding protein_coding MGP_AJ_T0096906.1 MGP_AJ_G0035887.1 mouse_genomes_project X 88612835 88614406 - MGP_AJ_P0096906 Mageb18 protein_coding protein_coding MGP_AJ_T0005616.1 MGP_AJ_G0004729.1 mouse_genomes_project X 159123705 159124260 + Gm15202 antisense antisense MGP_AJ_T0097425.1 MGP_AJ_G0036038.1 mouse_genomes_project X 130425965 130441011 + MGP_AJ_P0097425 Tnmd protein_coding protein_coding MGP_AJ_T0096276.1 MGP_AJ_G0035730.1 mouse_genomes_project X 52754919 52764308 - Arhgef6 protein_coding retained_intron MGP_AJ_T0096277.1 MGP_AJ_G0035730.1 mouse_genomes_project X 52754919 52864512 - MGP_AJ_P0096277 Arhgef6 protein_coding protein_coding MGP_AJ_T0096278.1 MGP_AJ_G0035730.1 mouse_genomes_project X 52756874 52804164 - MGP_AJ_P0096278 Arhgef6 protein_coding protein_coding MGP_AJ_T0096279.1 MGP_AJ_G0035730.1 mouse_genomes_project X 52762648 52774672 - MGP_AJ_P0096279 Arhgef6 protein_coding protein_coding MGP_AJ_T0096280.1 MGP_AJ_G0035730.1 mouse_genomes_project X 52772314 52851148 - MGP_AJ_P0096280 Arhgef6 protein_coding protein_coding MGP_AJ_T0096281.1 MGP_AJ_G0035730.1 mouse_genomes_project X 52794831 52851150 - Arhgef6 protein_coding retained_intron MGP_AJ_T0096282.1 MGP_AJ_G0035730.1 mouse_genomes_project X 52822327 52824662 - Arhgef6 protein_coding processed_transcript MGP_AJ_T0096283.1 MGP_AJ_G0035730.1 mouse_genomes_project X 52861686 52864289 - Arhgef6 protein_coding retained_intron MGP_AJ_T0096977.1 MGP_AJ_G0035905.1 mouse_genomes_project X 92200436 92222207 - MGP_AJ_P0096977 Zc4h2 protein_coding protein_coding MGP_AJ_T0096978.1 MGP_AJ_G0035905.1 mouse_genomes_project X 92200439 92222182 - MGP_AJ_P0096978 Zc4h2 protein_coding protein_coding MGP_AJ_T0096979.1 MGP_AJ_G0035905.1 mouse_genomes_project X 92200442 92222308 - MGP_AJ_P0096979 Zc4h2 protein_coding protein_coding MGP_AJ_T0011178.1 MGP_AJ_G0009300.1 mouse_genomes_project X 68882604 68882670 + Mir2137 miRNA miRNA MGP_AJ_T0097371.1 MGP_AJ_G0036016.1 mouse_genomes_project X 109618982 109773423 - MGP_AJ_P0097371 Chm protein_coding protein_coding MGP_AJ_T0097372.1 MGP_AJ_G0036016.1 mouse_genomes_project X 109621563 109625959 - Chm protein_coding processed_transcript MGP_AJ_T0097373.1 MGP_AJ_G0036016.1 mouse_genomes_project X 109640902 109767338 - Chm protein_coding processed_transcript MGP_AJ_T0097374.1 MGP_AJ_G0036016.1 mouse_genomes_project X 109701612 109767338 - Chm protein_coding processed_transcript MGP_AJ_T0002476.1 MGP_AJ_G0002385.1 mouse_genomes_project X 37173563 37187743 - TEC TEC MGP_AJ_T0016713.1 MGP_AJ_G0014808.1 mouse_genomes_project X 127026097 127026885 + processed_pseudogene processed_pseudogene MGP_AJ_T0016773.1 MGP_AJ_G0014868.1 mouse_genomes_project X 138759144 138759417 - processed_pseudogene processed_pseudogene MGP_AJ_T0101607.1 MGP_AJ_G0039573.1 mouse_genomes_project X 16513241 16513372 - Gm22592 snoRNA snoRNA MGP_AJ_T0016209.1 MGP_AJ_G0014304.1 mouse_genomes_project X 3725436 3726368 + processed_pseudogene processed_pseudogene MGP_AJ_T0095946.1 MGP_AJ_G0035605.1 mouse_genomes_project X 31904541 31983115 - MGP_AJ_P0095946 Sept6 protein_coding protein_coding MGP_AJ_T0095947.1 MGP_AJ_G0035605.1 mouse_genomes_project X 31906661 31983115 - MGP_AJ_P0095947 Sept6 protein_coding protein_coding MGP_AJ_T0095948.1 MGP_AJ_G0035605.1 mouse_genomes_project X 31908246 31983115 - MGP_AJ_P0095948 Sept6 protein_coding protein_coding MGP_AJ_T0095949.1 MGP_AJ_G0035605.1 mouse_genomes_project X 31959923 31985199 - MGP_AJ_P0095949 Sept6 protein_coding protein_coding MGP_AJ_T0095950.1 MGP_AJ_G0035605.1 mouse_genomes_project X 31965229 31982950 - Sept6 protein_coding retained_intron MGP_AJ_T0095605.1 MGP_AJ_G0035502.1 mouse_genomes_project X 2368462 2401296 + MGP_AJ_P0095605 Gripap1 protein_coding protein_coding MGP_AJ_T0095606.1 MGP_AJ_G0035502.1 mouse_genomes_project X 2368691 2393212 + MGP_AJ_P0095606 Gripap1 protein_coding protein_coding MGP_AJ_T0095607.1 MGP_AJ_G0035502.1 mouse_genomes_project X 2368692 2401292 + MGP_AJ_P0095607 Gripap1 protein_coding protein_coding MGP_AJ_T0095608.1 MGP_AJ_G0035502.1 mouse_genomes_project X 2368703 2373242 + Gripap1 protein_coding retained_intron MGP_AJ_T0095609.1 MGP_AJ_G0035502.1 mouse_genomes_project X 2368705 2401292 + MGP_AJ_P0095609 Gripap1 protein_coding protein_coding MGP_AJ_T0095610.1 MGP_AJ_G0035502.1 mouse_genomes_project X 2368709 2393212 + MGP_AJ_P0095610 Gripap1 protein_coding protein_coding MGP_AJ_T0095611.1 MGP_AJ_G0035502.1 mouse_genomes_project X 2368715 2400685 + Gripap1 protein_coding processed_transcript MGP_AJ_T0095612.1 MGP_AJ_G0035502.1 mouse_genomes_project X 2377902 2391588 + Gripap1 protein_coding retained_intron MGP_AJ_T0095613.1 MGP_AJ_G0035502.1 mouse_genomes_project X 2390686 2391540 + Gripap1 protein_coding processed_transcript MGP_AJ_T0095614.1 MGP_AJ_G0035502.1 mouse_genomes_project X 2399647 2401292 + Gripap1 protein_coding retained_intron MGP_AJ_T0097083.1 MGP_AJ_G0035934.1 mouse_genomes_project X 97266144 97320562 + MGP_AJ_P0097083 Dlg3 protein_coding protein_coding MGP_AJ_T0097084.1 MGP_AJ_G0035934.1 mouse_genomes_project X 97266145 97320564 + MGP_AJ_P0097084 Dlg3 protein_coding protein_coding MGP_AJ_T0097085.1 MGP_AJ_G0035934.1 mouse_genomes_project X 97266171 97320564 + MGP_AJ_P0097085 Dlg3 protein_coding protein_coding MGP_AJ_T0097086.1 MGP_AJ_G0035934.1 mouse_genomes_project X 97266417 97320566 + Dlg3 protein_coding retained_intron MGP_AJ_T0097087.1 MGP_AJ_G0035934.1 mouse_genomes_project X 97275189 97320564 + MGP_AJ_P0097087 Dlg3 protein_coding protein_coding MGP_AJ_T0097088.1 MGP_AJ_G0035934.1 mouse_genomes_project X 97277709 97320564 + Dlg3 protein_coding processed_transcript MGP_AJ_T0097089.1 MGP_AJ_G0035934.1 mouse_genomes_project X 97298875 97308768 + Dlg3 protein_coding processed_transcript MGP_AJ_T0097090.1 MGP_AJ_G0035934.1 mouse_genomes_project X 97310154 97316986 + Dlg3 protein_coding processed_transcript MGP_AJ_T0011113.1 MGP_AJ_G0009235.1 mouse_genomes_project X 1804089 1804154 - Mir362 miRNA miRNA MGP_AJ_T0011157.1 MGP_AJ_G0009279.1 mouse_genomes_project X 62537978 62538056 - Mir883b miRNA miRNA MGP_AJ_T0097513.1 MGP_AJ_G0036060.1 mouse_genomes_project X 132077531 132083066 + MGP_AJ_P0097513 protein_coding protein_coding MGP_AJ_T0101617.1 MGP_AJ_G0039583.1 mouse_genomes_project X 69724022 69724145 + Gm25226 snoRNA snoRNA MGP_AJ_T0011226.1 MGP_AJ_G0009348.1 mouse_genomes_project X 164260167 164260295 + Gm44376 miRNA miRNA MGP_AJ_T0096595.1 MGP_AJ_G0035811.1 mouse_genomes_project X 70005650 70065988 - MGP_AJ_P0096595 Mecp2 protein_coding protein_coding MGP_AJ_T0096596.1 MGP_AJ_G0035811.1 mouse_genomes_project X 70011234 70060351 - MGP_AJ_P0096596 Mecp2 protein_coding protein_coding MGP_AJ_T0096597.1 MGP_AJ_G0035811.1 mouse_genomes_project X 70014736 70066009 - MGP_AJ_P0096597 Mecp2 protein_coding protein_coding MGP_AJ_T0096598.1 MGP_AJ_G0035811.1 mouse_genomes_project X 70014737 70065931 - MGP_AJ_P0096598 Mecp2 protein_coding protein_coding MGP_AJ_T0096599.1 MGP_AJ_G0035811.1 mouse_genomes_project X 70015118 70065929 - MGP_AJ_P0096599 Mecp2 protein_coding protein_coding MGP_AJ_T0096600.1 MGP_AJ_G0035811.1 mouse_genomes_project X 70061351 70065916 - Mecp2 protein_coding retained_intron MGP_AJ_T0016782.1 MGP_AJ_G0014877.1 mouse_genomes_project X 139310720 139311211 - processed_pseudogene processed_pseudogene MGP_AJ_T0095977.1 MGP_AJ_G0035624.1 mouse_genomes_project X 32547463 32548631 + MGP_AJ_P0095977 protein_coding protein_coding MGP_AJ_T0095980.1 MGP_AJ_G0035624.1 mouse_genomes_project X 32547787 32579513 + protein_coding retained_intron MGP_AJ_T0097571.1 MGP_AJ_G0036082.1 mouse_genomes_project X 133468426 133470401 + MGP_AJ_P0097571 Tceal5 protein_coding protein_coding MGP_AJ_T0011131.1 MGP_AJ_G0009253.1 mouse_genomes_project X 43677111 43677230 + Gm27828 miRNA miRNA MGP_AJ_T0016731.1 MGP_AJ_G0014826.1 mouse_genomes_project X 131481124 131481987 - processed_pseudogene processed_pseudogene MGP_AJ_T0097411.1 MGP_AJ_G0036034.1 mouse_genomes_project X 123822174 123823780 + MGP_AJ_P0097411 4921511C20Rik protein_coding protein_coding MGP_AJ_T0016797.1 MGP_AJ_G0014892.1 mouse_genomes_project X 141745543 141746144 + processed_pseudogene processed_pseudogene MGP_AJ_T0016313.1 MGP_AJ_G0014408.1 mouse_genomes_project X 40555421 40557871 - processed_pseudogene processed_pseudogene MGP_AJ_T0096839.1 MGP_AJ_G0035864.1 mouse_genomes_project X 74520186 74521672 + MGP_AJ_P0096839 4930480E11Rik protein_coding protein_coding MGP_AJ_T0009415.1 MGP_AJ_G0007555.1 mouse_genomes_project X 100150355 100212823 - Ftx lincRNA lincRNA MGP_AJ_T0009416.1 MGP_AJ_G0007555.1 mouse_genomes_project X 100152345 100206178 - Ftx lincRNA lincRNA MGP_AJ_T0009417.1 MGP_AJ_G0007555.1 mouse_genomes_project X 100159016 100212732 - Ftx lincRNA lincRNA MGP_AJ_T0009418.1 MGP_AJ_G0007555.1 mouse_genomes_project X 100159016 100206108 - Ftx lincRNA lincRNA MGP_AJ_T0009419.1 MGP_AJ_G0007555.1 mouse_genomes_project X 100196841 100212823 - Ftx lincRNA lincRNA MGP_AJ_T0009420.1 MGP_AJ_G0007555.1 mouse_genomes_project X 100196894 100211569 - Ftx lincRNA lincRNA MGP_AJ_T0097609.1 MGP_AJ_G0036094.1 mouse_genomes_project X 134397789 135693457 + MGP_AJ_P0097609 Il1rapl2 protein_coding protein_coding MGP_AJ_T0097610.1 MGP_AJ_G0036094.1 mouse_genomes_project X 134398200 135345767 + Il1rapl2 protein_coding retained_intron MGP_AJ_T0097611.1 MGP_AJ_G0036094.1 mouse_genomes_project X 134481300 135693135 + MGP_AJ_P0097611 Il1rapl2 protein_coding protein_coding MGP_AJ_T0098188.1 MGP_AJ_G0036238.1 mouse_genomes_project X 164522904 164525126 - MGP_AJ_P0098188 Tmsb4x protein_coding protein_coding MGP_AJ_T0098189.1 MGP_AJ_G0036238.1 mouse_genomes_project X 164522906 164524960 - MGP_AJ_P0098189 Tmsb4x protein_coding protein_coding MGP_AJ_T0098190.1 MGP_AJ_G0036238.1 mouse_genomes_project X 164523103 164524638 - MGP_AJ_P0098190 Tmsb4x protein_coding protein_coding MGP_AJ_T0096777.1 MGP_AJ_G0035841.1 mouse_genomes_project X 71147316 71168182 - MGP_AJ_P0096777 Mpp1 protein_coding protein_coding MGP_AJ_T0096778.1 MGP_AJ_G0035841.1 mouse_genomes_project X 71148231 71168010 - MGP_AJ_P0096778 Mpp1 protein_coding protein_coding MGP_AJ_T0096779.1 MGP_AJ_G0035841.1 mouse_genomes_project X 71149299 71168115 - MGP_AJ_P0096779 Mpp1 protein_coding protein_coding MGP_AJ_T0096780.1 MGP_AJ_G0035841.1 mouse_genomes_project X 71149936 71168020 - MGP_AJ_P0096780 Mpp1 protein_coding protein_coding MGP_AJ_T0096781.1 MGP_AJ_G0035841.1 mouse_genomes_project X 71151148 71168020 - Mpp1 protein_coding processed_transcript MGP_AJ_T0096782.1 MGP_AJ_G0035841.1 mouse_genomes_project X 71153418 71155431 - Mpp1 protein_coding retained_intron MGP_AJ_T0096783.1 MGP_AJ_G0035841.1 mouse_genomes_project X 71153644 71168020 - MGP_AJ_P0096783 Mpp1 protein_coding protein_coding MGP_AJ_T0096784.1 MGP_AJ_G0035841.1 mouse_genomes_project X 71159055 71168020 - MGP_AJ_P0096784 Mpp1 protein_coding protein_coding MGP_AJ_T0096785.1 MGP_AJ_G0035841.1 mouse_genomes_project X 71160276 71168152 - Mpp1 protein_coding retained_intron MGP_AJ_T0096786.1 MGP_AJ_G0035841.1 mouse_genomes_project X 71163099 71168119 - MGP_AJ_P0096786 Mpp1 protein_coding nonsense_mediated_decay MGP_AJ_T0016322.1 MGP_AJ_G0014417.1 mouse_genomes_project X 43912913 43913210 - processed_pseudogene processed_pseudogene MGP_AJ_T0016703.1 MGP_AJ_G0014798.1 mouse_genomes_project X 123360545 123362582 - processed_pseudogene processed_pseudogene MGP_AJ_T0101635.1 MGP_AJ_G0039601.1 mouse_genomes_project X 117492104 117492232 + Gm22590 snoRNA snoRNA MGP_AJ_T0016377.1 MGP_AJ_G0014472.1 mouse_genomes_project X 57621628 57622618 + processed_pseudogene processed_pseudogene MGP_AJ_T0016367.1 MGP_AJ_G0014462.1 mouse_genomes_project X 56388925 56389500 + processed_pseudogene processed_pseudogene MGP_AJ_T0097829.1 MGP_AJ_G0036149.1 mouse_genomes_project X 147916490 147952394 - MGP_AJ_P0097829 Gnl3l protein_coding protein_coding MGP_AJ_T0097830.1 MGP_AJ_G0036149.1 mouse_genomes_project X 147916490 147952394 - MGP_AJ_P0097830 Gnl3l protein_coding protein_coding MGP_AJ_T0097831.1 MGP_AJ_G0036149.1 mouse_genomes_project X 147921121 147927222 - Gnl3l protein_coding retained_intron MGP_AJ_T0097832.1 MGP_AJ_G0036149.1 mouse_genomes_project X 147930152 147932942 - Gnl3l protein_coding retained_intron MGP_AJ_T0097833.1 MGP_AJ_G0036149.1 mouse_genomes_project X 147930522 147952394 - MGP_AJ_P0097833 Gnl3l protein_coding protein_coding MGP_AJ_T0097834.1 MGP_AJ_G0036149.1 mouse_genomes_project X 147935371 147952394 - MGP_AJ_P0097834 Gnl3l protein_coding nonsense_mediated_decay MGP_AJ_T0097835.1 MGP_AJ_G0036149.1 mouse_genomes_project X 147935415 147952394 - MGP_AJ_P0097835 Gnl3l protein_coding protein_coding MGP_AJ_T0011117.1 MGP_AJ_G0009239.1 mouse_genomes_project X 7803896 7803988 - Gm25063 miRNA miRNA MGP_AJ_T0063582.1 MGP_AJ_G0027801.1 mouse_genomes_project 3 120996094 121000528 + MGP_AJ_P0063582 Fabp2 protein_coding protein_coding MGP_AJ_T0062400.1 MGP_AJ_G0027537.1 mouse_genomes_project 3 92983364 92993359 - MGP_AJ_P0062400 Bnipl protein_coding protein_coding MGP_AJ_T0062401.1 MGP_AJ_G0027537.1 mouse_genomes_project 3 92983388 92993215 - MGP_AJ_P0062401 Bnipl protein_coding protein_coding MGP_AJ_T0062402.1 MGP_AJ_G0027537.1 mouse_genomes_project 3 92983918 92993302 - MGP_AJ_P0062402 Bnipl protein_coding protein_coding MGP_AJ_T0062403.1 MGP_AJ_G0027537.1 mouse_genomes_project 3 92985153 92993314 - MGP_AJ_P0062403 Bnipl protein_coding protein_coding MGP_AJ_T0062404.1 MGP_AJ_G0027537.1 mouse_genomes_project 3 92987308 92990745 - Bnipl protein_coding retained_intron MGP_AJ_T0001210.1 MGP_AJ_G0001134.1 mouse_genomes_project 3 50130434 50134610 + TEC TEC MGP_AJ_T0063045.1 MGP_AJ_G0027684.1 mouse_genomes_project 3 103898115 103915516 - MGP_AJ_P0063045 Atp5f1 protein_coding protein_coding MGP_AJ_T0063046.1 MGP_AJ_G0027684.1 mouse_genomes_project 3 103898119 103914693 - MGP_AJ_P0063046 Atp5f1 protein_coding nonsense_mediated_decay MGP_AJ_T0063047.1 MGP_AJ_G0027684.1 mouse_genomes_project 3 103898315 103909599 - MGP_AJ_P0063047 Atp5f1 protein_coding protein_coding MGP_AJ_T0063048.1 MGP_AJ_G0027684.1 mouse_genomes_project 3 103909087 103914681 - Atp5f1 protein_coding retained_intron MGP_AJ_T0063049.1 MGP_AJ_G0027684.1 mouse_genomes_project 3 103909244 103911424 - Atp5f1 protein_coding retained_intron MGP_AJ_T0063050.1 MGP_AJ_G0027684.1 mouse_genomes_project 3 103914007 103914663 - Atp5f1 protein_coding retained_intron MGP_AJ_T0001380.1 MGP_AJ_G0001303.1 mouse_genomes_project 3 150569360 150571672 - TEC TEC MGP_AJ_T0007513.1 MGP_AJ_G0006154.1 mouse_genomes_project 3 34758020 34759387 + 4930594O21Rik lincRNA lincRNA MGP_AJ_T0007514.1 MGP_AJ_G0006154.1 mouse_genomes_project 3 34758030 34758937 + 4930594O21Rik lincRNA lincRNA MGP_AJ_T0102574.1 MGP_AJ_G0040316.1 mouse_genomes_project 3 140697455 140707394 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0018001.1 MGP_AJ_G0015499.1 mouse_genomes_project 3 120374183 120383776 - processed_transcript retained_intron MGP_AJ_T0062185.1 MGP_AJ_G0027482.1 mouse_genomes_project 3 90288489 90290557 - MGP_AJ_P0062185 Lce1h protein_coding protein_coding MGP_AJ_T0007776.1 MGP_AJ_G0006357.1 mouse_genomes_project 3 148743525 148749027 + Gm43470 lincRNA lincRNA MGP_AJ_T0007777.1 MGP_AJ_G0006357.1 mouse_genomes_project 3 148743604 148766361 + Gm43470 lincRNA lincRNA MGP_AJ_T0099862.1 MGP_AJ_G0037828.1 mouse_genomes_project 3 100877945 100878110 - Gm22826 snRNA snRNA MGP_AJ_T0101152.1 MGP_AJ_G0039118.1 mouse_genomes_project 3 102140320 102140436 + Gm23077 snoRNA snoRNA MGP_AJ_T0099863.1 MGP_AJ_G0037829.1 mouse_genomes_project 3 101386605 101386712 - Gm25199 snRNA snRNA MGP_AJ_T0060808.1 MGP_AJ_G0027165.1 mouse_genomes_project 3 50473043 50487791 - MGP_AJ_P0060808 Nhlrc3 protein_coding protein_coding MGP_AJ_T0060809.1 MGP_AJ_G0027165.1 mouse_genomes_project 3 50473048 50487782 - MGP_AJ_P0060809 Nhlrc3 protein_coding nonsense_mediated_decay MGP_AJ_T0060810.1 MGP_AJ_G0027165.1 mouse_genomes_project 3 50482830 50486442 - Nhlrc3 protein_coding retained_intron MGP_AJ_T0060811.1 MGP_AJ_G0027165.1 mouse_genomes_project 3 50483335 50487710 - Nhlrc3 protein_coding retained_intron MGP_AJ_T0060812.1 MGP_AJ_G0027165.1 mouse_genomes_project 3 50486521 50487756 - Nhlrc3 protein_coding retained_intron MGP_AJ_T0102525.1 MGP_AJ_G0040267.1 mouse_genomes_project 3 11825844 11835484 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0063572.1 MGP_AJ_G0027798.1 mouse_genomes_project 3 120633315 120658466 - MGP_AJ_P0063572 Fnbp1l protein_coding protein_coding MGP_AJ_T0063573.1 MGP_AJ_G0027798.1 mouse_genomes_project 3 120633321 120714320 - MGP_AJ_P0063573 Fnbp1l protein_coding protein_coding MGP_AJ_T0063574.1 MGP_AJ_G0027798.1 mouse_genomes_project 3 120636697 120714158 - MGP_AJ_P0063574 Fnbp1l protein_coding protein_coding MGP_AJ_T0063575.1 MGP_AJ_G0027798.1 mouse_genomes_project 3 120642661 120649704 - Fnbp1l protein_coding retained_intron MGP_AJ_T0063576.1 MGP_AJ_G0027798.1 mouse_genomes_project 3 120652501 120653837 - Fnbp1l protein_coding retained_intron MGP_AJ_T0001284.1 MGP_AJ_G0001208.1 mouse_genomes_project 3 105929360 105930046 + TEC TEC MGP_AJ_T0011543.1 MGP_AJ_G0009665.1 mouse_genomes_project 3 79886758 79887000 - Gm22038 misc_RNA misc_RNA MGP_AJ_T0001122.1 MGP_AJ_G0001048.1 mouse_genomes_project 3 19949416 19949667 + TEC TEC MGP_AJ_T0061574.1 MGP_AJ_G0027347.1 mouse_genomes_project 3 85224555 85265701 + MGP_AJ_P0061574 Iqgap3 protein_coding protein_coding MGP_AJ_T0061575.1 MGP_AJ_G0027347.1 mouse_genomes_project 3 85224604 85230146 + Iqgap3 protein_coding retained_intron MGP_AJ_T0061576.1 MGP_AJ_G0027347.1 mouse_genomes_project 3 85224612 85250886 + MGP_AJ_P0061576 Iqgap3 protein_coding nonsense_mediated_decay MGP_AJ_T0061577.1 MGP_AJ_G0027347.1 mouse_genomes_project 3 85228743 85230139 + Iqgap3 protein_coding retained_intron MGP_AJ_T0061578.1 MGP_AJ_G0027347.1 mouse_genomes_project 3 85247744 85265697 + MGP_AJ_P0061578 Iqgap3 protein_coding protein_coding MGP_AJ_T0061579.1 MGP_AJ_G0027347.1 mouse_genomes_project 3 85249611 85256813 + Iqgap3 protein_coding retained_intron MGP_AJ_T0001187.1 MGP_AJ_G0001113.1 mouse_genomes_project 3 48436370 48436596 + TEC TEC MGP_AJ_T0007620.1 MGP_AJ_G0006228.1 mouse_genomes_project 3 87267140 87269706 + Gm19710 lincRNA lincRNA MGP_AJ_T0007621.1 MGP_AJ_G0006228.1 mouse_genomes_project 3 87269495 87290018 + Gm19710 lincRNA lincRNA MGP_AJ_T0011531.1 MGP_AJ_G0009653.1 mouse_genomes_project 3 11142143 11142424 - Gm22026 misc_RNA misc_RNA MGP_AJ_T0001382.1 MGP_AJ_G0001305.1 mouse_genomes_project 3 150574788 150576567 + TEC TEC MGP_AJ_T0062195.1 MGP_AJ_G0027491.1 mouse_genomes_project 3 90487656 90488162 + MGP_AJ_P0062195 protein_coding protein_coding MGP_AJ_T0014028.1 MGP_AJ_G0012123.1 mouse_genomes_project 3 44138087 44139090 - processed_pseudogene processed_pseudogene MGP_AJ_T0014322.1 MGP_AJ_G0012417.1 mouse_genomes_project 3 132279076 132279542 - processed_pseudogene processed_pseudogene MGP_AJ_T0099816.1 MGP_AJ_G0037782.1 mouse_genomes_project 3 38039981 38040139 + Gm22043 snRNA snRNA MGP_AJ_T0014290.1 MGP_AJ_G0012385.1 mouse_genomes_project 3 120727488 120727996 - processed_pseudogene processed_pseudogene MGP_AJ_T0001197.1 MGP_AJ_G0001122.1 mouse_genomes_project 3 48887608 48888826 - TEC TEC MGP_AJ_T0007745.1 MGP_AJ_G0006332.1 mouse_genomes_project 3 141417441 141420770 + Gm43612 lincRNA lincRNA MGP_AJ_T0013925.1 MGP_AJ_G0012020.1 mouse_genomes_project 3 9748753 9749339 + processed_pseudogene processed_pseudogene MGP_AJ_T0062240.1 MGP_AJ_G0027510.1 mouse_genomes_project 3 92126838 92130360 + Mrpl9 protein_coding retained_intron MGP_AJ_T0062241.1 MGP_AJ_G0027510.1 mouse_genomes_project 3 92126845 92132227 + MGP_AJ_P0062241 Mrpl9 protein_coding protein_coding MGP_AJ_T0062242.1 MGP_AJ_G0027510.1 mouse_genomes_project 3 92126857 92134644 + MGP_AJ_P0062242 Mrpl9 protein_coding protein_coding MGP_AJ_T0001373.1 MGP_AJ_G0001296.1 mouse_genomes_project 3 146589877 146590748 + TEC TEC MGP_AJ_T0061009.1 MGP_AJ_G0027210.1 mouse_genomes_project 3 57050023 57069208 + MGP_AJ_P0061009 protein_coding protein_coding MGP_AJ_T0001222.1 MGP_AJ_G0001146.1 mouse_genomes_project 3 53211692 53215308 - TEC TEC MGP_AJ_T0010526.1 MGP_AJ_G0008648.1 mouse_genomes_project 3 86472287 86472370 - Mir92b miRNA miRNA MGP_AJ_T0064240.1 MGP_AJ_G0027929.1 mouse_genomes_project 3 144531086 144569190 + MGP_AJ_P0064240 Ssx2ip protein_coding protein_coding MGP_AJ_T0064241.1 MGP_AJ_G0027929.1 mouse_genomes_project 3 144531086 144568828 + MGP_AJ_P0064241 Ssx2ip protein_coding protein_coding MGP_AJ_T0064242.1 MGP_AJ_G0027929.1 mouse_genomes_project 3 144531108 144569179 + MGP_AJ_P0064242 Ssx2ip protein_coding protein_coding MGP_AJ_T0064243.1 MGP_AJ_G0027929.1 mouse_genomes_project 3 144531130 144567952 + MGP_AJ_P0064243 Ssx2ip protein_coding protein_coding MGP_AJ_T0064244.1 MGP_AJ_G0027929.1 mouse_genomes_project 3 144531135 144544777 + MGP_AJ_P0064244 Ssx2ip protein_coding protein_coding MGP_AJ_T0064245.1 MGP_AJ_G0027929.1 mouse_genomes_project 3 144531422 144545737 + MGP_AJ_P0064245 Ssx2ip protein_coding protein_coding MGP_AJ_T0064246.1 MGP_AJ_G0027929.1 mouse_genomes_project 3 144559546 144561622 + Ssx2ip protein_coding retained_intron MGP_AJ_T0060080.1 MGP_AJ_G0027024.1 mouse_genomes_project 3 7304541 7308620 - MGP_AJ_P0060080 Pmp2 protein_coding protein_coding MGP_AJ_T0060601.1 MGP_AJ_G0027130.1 mouse_genomes_project 3 34498820 34550882 + MGP_AJ_P0060601 Fgf2 protein_coding protein_coding MGP_AJ_T0060602.1 MGP_AJ_G0027130.1 mouse_genomes_project 3 34499127 34555582 + MGP_AJ_P0060602 Fgf2 protein_coding protein_coding MGP_AJ_T0060603.1 MGP_AJ_G0027130.1 mouse_genomes_project 3 34499324 34550306 + MGP_AJ_P0060603 Fgf2 protein_coding protein_coding MGP_AJ_T0060604.1 MGP_AJ_G0027130.1 mouse_genomes_project 3 34517796 34550306 + Fgf2 protein_coding processed_transcript MGP_AJ_T0060605.1 MGP_AJ_G0027130.1 mouse_genomes_project 3 34531454 34550306 + Fgf2 protein_coding processed_transcript MGP_AJ_T0060606.1 MGP_AJ_G0027130.1 mouse_genomes_project 3 34531550 34550306 + MGP_AJ_P0060606 Fgf2 protein_coding protein_coding MGP_AJ_T0060607.1 MGP_AJ_G0027130.1 mouse_genomes_project 3 34531550 34550306 + MGP_AJ_P0060607 Fgf2 protein_coding protein_coding MGP_AJ_T0060608.1 MGP_AJ_G0027130.1 mouse_genomes_project 3 34550049 34550306 + Fgf2 protein_coding retained_intron MGP_AJ_T0013958.1 MGP_AJ_G0012053.1 mouse_genomes_project 3 17950157 17951751 + processed_pseudogene processed_pseudogene MGP_AJ_T0013932.1 MGP_AJ_G0012027.1 mouse_genomes_project 3 11445489 11445624 + processed_pseudogene processed_pseudogene MGP_AJ_T0007524.1 MGP_AJ_G0006162.1 mouse_genomes_project 3 37619867 37637837 - 1700017G19Rik lincRNA lincRNA MGP_AJ_T0007525.1 MGP_AJ_G0006162.1 mouse_genomes_project 3 37623430 37624773 - 1700017G19Rik lincRNA lincRNA MGP_AJ_T0063228.1 MGP_AJ_G0027735.1 mouse_genomes_project 3 106443334 106447674 + MGP_AJ_P0063228 Psrc1 protein_coding protein_coding MGP_AJ_T0063229.1 MGP_AJ_G0027735.1 mouse_genomes_project 3 106443346 106444904 + Psrc1 protein_coding processed_transcript MGP_AJ_T0063230.1 MGP_AJ_G0027735.1 mouse_genomes_project 3 106443347 106446098 + Psrc1 protein_coding processed_transcript MGP_AJ_T0063231.1 MGP_AJ_G0027735.1 mouse_genomes_project 3 106443354 106447726 + MGP_AJ_P0063231 Psrc1 protein_coding protein_coding MGP_AJ_T0063232.1 MGP_AJ_G0027735.1 mouse_genomes_project 3 106443374 106445879 + Psrc1 protein_coding processed_transcript MGP_AJ_T0063233.1 MGP_AJ_G0027735.1 mouse_genomes_project 3 106443411 106444905 + MGP_AJ_P0063233 Psrc1 protein_coding protein_coding MGP_AJ_T0063234.1 MGP_AJ_G0027735.1 mouse_genomes_project 3 106443432 106446118 + Psrc1 protein_coding processed_transcript MGP_AJ_T0063235.1 MGP_AJ_G0027735.1 mouse_genomes_project 3 106443889 106445440 + Psrc1 protein_coding retained_intron MGP_AJ_T0063236.1 MGP_AJ_G0027735.1 mouse_genomes_project 3 106444349 106446369 + Psrc1 protein_coding retained_intron MGP_AJ_T0063237.1 MGP_AJ_G0027735.1 mouse_genomes_project 3 106444352 106446200 + Psrc1 protein_coding retained_intron MGP_AJ_T0063238.1 MGP_AJ_G0027735.1 mouse_genomes_project 3 106445560 106446208 + Psrc1 protein_coding processed_transcript MGP_AJ_T0060095.1 MGP_AJ_G0027030.1 mouse_genomes_project 3 7453163 7467236 - MGP_AJ_P0060095 Gm38303 protein_coding nonsense_mediated_decay MGP_AJ_T0062469.1 MGP_AJ_G0027549.1 mouse_genomes_project 3 93411712 93416101 + MGP_AJ_P0062469 Mcl1 protein_coding protein_coding MGP_AJ_T0062470.1 MGP_AJ_G0027549.1 mouse_genomes_project 3 93411781 93413748 + MGP_AJ_P0062470 Mcl1 protein_coding protein_coding MGP_AJ_T0063477.1 MGP_AJ_G0027784.1 mouse_genomes_project 3 117811367 117878626 - MGP_AJ_P0063477 Ptbp2 protein_coding protein_coding MGP_AJ_T0063478.1 MGP_AJ_G0027784.1 mouse_genomes_project 3 117811367 117879038 - MGP_AJ_P0063478 Ptbp2 protein_coding protein_coding MGP_AJ_T0063479.1 MGP_AJ_G0027784.1 mouse_genomes_project 3 117812946 117878472 - MGP_AJ_P0063479 Ptbp2 protein_coding nonsense_mediated_decay MGP_AJ_T0063480.1 MGP_AJ_G0027784.1 mouse_genomes_project 3 117812971 117818778 - MGP_AJ_P0063480 Ptbp2 protein_coding nonsense_mediated_decay MGP_AJ_T0063481.1 MGP_AJ_G0027784.1 mouse_genomes_project 3 117813010 117834307 - Ptbp2 protein_coding retained_intron MGP_AJ_T0063482.1 MGP_AJ_G0027784.1 mouse_genomes_project 3 117813435 117817025 - Ptbp2 protein_coding retained_intron MGP_AJ_T0063483.1 MGP_AJ_G0027784.1 mouse_genomes_project 3 117816744 117833938 - MGP_AJ_P0063483 Ptbp2 protein_coding protein_coding MGP_AJ_T0063484.1 MGP_AJ_G0027784.1 mouse_genomes_project 3 117832149 117836196 - Ptbp2 protein_coding retained_intron MGP_AJ_T0063485.1 MGP_AJ_G0027784.1 mouse_genomes_project 3 117840063 117878524 - MGP_AJ_P0063485 Ptbp2 protein_coding protein_coding MGP_AJ_T0063486.1 MGP_AJ_G0027784.1 mouse_genomes_project 3 117841339 117879698 - Ptbp2 protein_coding processed_transcript MGP_AJ_T0063487.1 MGP_AJ_G0027784.1 mouse_genomes_project 3 117853786 117879700 - Ptbp2 protein_coding processed_transcript MGP_AJ_T0063488.1 MGP_AJ_G0027784.1 mouse_genomes_project 3 117853791 117878925 - Ptbp2 protein_coding processed_transcript MGP_AJ_T0063489.1 MGP_AJ_G0027784.1 mouse_genomes_project 3 117853793 117878545 - MGP_AJ_P0063489 Ptbp2 protein_coding protein_coding MGP_AJ_T0060819.1 MGP_AJ_G0027168.1 mouse_genomes_project 3 50542888 50688822 - MGP_AJ_P0060819 Frem2 protein_coding protein_coding MGP_AJ_T0060820.1 MGP_AJ_G0027168.1 mouse_genomes_project 3 50544802 50573126 - Frem2 protein_coding processed_transcript MGP_AJ_T0060821.1 MGP_AJ_G0027168.1 mouse_genomes_project 3 50544906 50551776 - Frem2 protein_coding retained_intron MGP_AJ_T0060822.1 MGP_AJ_G0027168.1 mouse_genomes_project 3 50678883 50683697 - Frem2 protein_coding retained_intron MGP_AJ_T0062388.1 MGP_AJ_G0027534.1 mouse_genomes_project 3 92961023 92970693 - MGP_AJ_P0062388 Mllt11 protein_coding protein_coding MGP_AJ_T0062389.1 MGP_AJ_G0027534.1 mouse_genomes_project 3 92961917 92974208 - MGP_AJ_P0062389 Mllt11 protein_coding protein_coding MGP_AJ_T0062390.1 MGP_AJ_G0027534.1 mouse_genomes_project 3 92961927 92974211 - MGP_AJ_P0062390 Mllt11 protein_coding protein_coding MGP_AJ_T0062391.1 MGP_AJ_G0027534.1 mouse_genomes_project 3 92970101 92972512 - Mllt11 protein_coding processed_transcript MGP_AJ_T0062395.1 MGP_AJ_G0027534.1 mouse_genomes_project 3 92971061 92972438 - Mllt11 protein_coding processed_transcript MGP_AJ_T0063584.1 MGP_AJ_G0027803.1 mouse_genomes_project 3 121028446 121030429 + MGP_AJ_P0063584 1810037I17Rik protein_coding protein_coding MGP_AJ_T0014266.1 MGP_AJ_G0012361.1 mouse_genomes_project 3 111883293 111884945 + processed_pseudogene processed_pseudogene MGP_AJ_T0063260.1 MGP_AJ_G0027740.1 mouse_genomes_project 3 106622563 106628309 - MGP_AJ_P0063260 protein_coding protein_coding MGP_AJ_T0063261.1 MGP_AJ_G0027740.1 mouse_genomes_project 3 106622563 106628605 - MGP_AJ_P0063261 protein_coding protein_coding MGP_AJ_T0102529.1 MGP_AJ_G0040271.1 mouse_genomes_project 3 56563608 56595306 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0001154.1 MGP_AJ_G0001080.1 mouse_genomes_project 3 34783105 34785179 - TEC TEC MGP_AJ_T0062872.1 MGP_AJ_G0027648.1 mouse_genomes_project 3 100987492 100997716 + MGP_AJ_P0062872 Nras protein_coding protein_coding MGP_AJ_T0062873.1 MGP_AJ_G0027648.1 mouse_genomes_project 3 100987555 100991742 + MGP_AJ_P0062873 Nras protein_coding nonsense_mediated_decay MGP_AJ_T0062874.1 MGP_AJ_G0027648.1 mouse_genomes_project 3 100987574 100993608 + MGP_AJ_P0062874 Nras protein_coding protein_coding MGP_AJ_T0062875.1 MGP_AJ_G0027648.1 mouse_genomes_project 3 100987801 100989520 + MGP_AJ_P0062875 Nras protein_coding protein_coding MGP_AJ_T0062876.1 MGP_AJ_G0027648.1 mouse_genomes_project 3 100987803 100992638 + MGP_AJ_P0062876 Nras protein_coding protein_coding MGP_AJ_T0062877.1 MGP_AJ_G0027648.1 mouse_genomes_project 3 100987950 100991741 + MGP_AJ_P0062877 Nras protein_coding protein_coding MGP_AJ_T0062878.1 MGP_AJ_G0027648.1 mouse_genomes_project 3 100988110 100995675 + MGP_AJ_P0062878 Nras protein_coding nonsense_mediated_decay MGP_AJ_T0062879.1 MGP_AJ_G0027648.1 mouse_genomes_project 3 100988110 100997708 + MGP_AJ_P0062879 Nras protein_coding nonsense_mediated_decay MGP_AJ_T0062880.1 MGP_AJ_G0027648.1 mouse_genomes_project 3 100988195 100992190 + Nras protein_coding retained_intron MGP_AJ_T0014063.1 MGP_AJ_G0012158.1 mouse_genomes_project 3 55463999 55464416 + processed_pseudogene processed_pseudogene MGP_AJ_T0062219.1 MGP_AJ_G0027504.1 mouse_genomes_project 3 92024246 92029496 + MGP_AJ_P0062219 Them5 protein_coding protein_coding MGP_AJ_T0062220.1 MGP_AJ_G0027504.1 mouse_genomes_project 3 92024406 92029494 + MGP_AJ_P0062220 Them5 protein_coding protein_coding MGP_AJ_T0060843.1 MGP_AJ_G0027172.1 mouse_genomes_project 3 51746400 51784534 + MGP_AJ_P0060843 Supt20 protein_coding protein_coding MGP_AJ_T0060844.1 MGP_AJ_G0027172.1 mouse_genomes_project 3 51746416 51784660 + MGP_AJ_P0060844 Supt20 protein_coding protein_coding MGP_AJ_T0060845.1 MGP_AJ_G0027172.1 mouse_genomes_project 3 51746416 51784660 + MGP_AJ_P0060845 Supt20 protein_coding protein_coding MGP_AJ_T0060846.1 MGP_AJ_G0027172.1 mouse_genomes_project 3 51746418 51784664 + MGP_AJ_P0060846 Supt20 protein_coding nonsense_mediated_decay MGP_AJ_T0060847.1 MGP_AJ_G0027172.1 mouse_genomes_project 3 51746428 51761433 + MGP_AJ_P0060847 Supt20 protein_coding protein_coding MGP_AJ_T0060848.1 MGP_AJ_G0027172.1 mouse_genomes_project 3 51746451 51767297 + Supt20 protein_coding retained_intron MGP_AJ_T0060849.1 MGP_AJ_G0027172.1 mouse_genomes_project 3 51746451 51749051 + Supt20 protein_coding retained_intron MGP_AJ_T0060850.1 MGP_AJ_G0027172.1 mouse_genomes_project 3 51746451 51750015 + Supt20 protein_coding retained_intron MGP_AJ_T0060851.1 MGP_AJ_G0027172.1 mouse_genomes_project 3 51746455 51761664 + MGP_AJ_P0060851 Supt20 protein_coding protein_coding MGP_AJ_T0060852.1 MGP_AJ_G0027172.1 mouse_genomes_project 3 51746698 51771382 + MGP_AJ_P0060852 Supt20 protein_coding protein_coding MGP_AJ_T0060853.1 MGP_AJ_G0027172.1 mouse_genomes_project 3 51746706 51784661 + MGP_AJ_P0060853 Supt20 protein_coding nonsense_mediated_decay MGP_AJ_T0060854.1 MGP_AJ_G0027172.1 mouse_genomes_project 3 51766782 51768898 + Supt20 protein_coding retained_intron MGP_AJ_T0011814.1 MGP_AJ_G0009925.1 mouse_genomes_project 3 89896406 89897721 + MGP_AJ_P0011814 Sprr2g polymorphic_pseudogene protein_coding MGP_AJ_T0014380.1 MGP_AJ_G0012475.1 mouse_genomes_project 3 152353257 152353594 + processed_pseudogene processed_pseudogene MGP_AJ_T0001183.1 MGP_AJ_G0001109.1 mouse_genomes_project 3 47983923 47985216 - TEC TEC MGP_AJ_T0060872.1 MGP_AJ_G0027177.1 mouse_genomes_project 3 51861294 51865971 - MGP_AJ_P0060872 Rfxap protein_coding protein_coding MGP_AJ_T0060873.1 MGP_AJ_G0027177.1 mouse_genomes_project 3 51862400 51863946 - Rfxap protein_coding processed_transcript MGP_AJ_T0060874.1 MGP_AJ_G0027177.1 mouse_genomes_project 3 51863953 51865600 - Rfxap protein_coding processed_transcript MGP_AJ_T0013984.1 MGP_AJ_G0012079.1 mouse_genomes_project 3 31341938 31342833 + processed_pseudogene processed_pseudogene MGP_AJ_T0062657.1 MGP_AJ_G0027596.1 mouse_genomes_project 3 94603780 94621722 + MGP_AJ_P0062657 Pdzk1 protein_coding protein_coding MGP_AJ_T0062658.1 MGP_AJ_G0027596.1 mouse_genomes_project 3 94603959 94621807 + MGP_AJ_P0062658 Pdzk1 protein_coding protein_coding MGP_AJ_T0062659.1 MGP_AJ_G0027596.1 mouse_genomes_project 3 94604572 94638366 + MGP_AJ_P0062659 Pdzk1 protein_coding protein_coding MGP_AJ_T0062660.1 MGP_AJ_G0027596.1 mouse_genomes_project 3 94606650 94638186 + MGP_AJ_P0062660 Pdzk1 protein_coding protein_coding MGP_AJ_T0062661.1 MGP_AJ_G0027596.1 mouse_genomes_project 3 94606667 94637912 + MGP_AJ_P0062661 Pdzk1 protein_coding protein_coding MGP_AJ_T0062662.1 MGP_AJ_G0027596.1 mouse_genomes_project 3 94606667 94638036 + MGP_AJ_P0062662 Pdzk1 protein_coding nonsense_mediated_decay MGP_AJ_T0062663.1 MGP_AJ_G0027596.1 mouse_genomes_project 3 94607722 94620443 + MGP_AJ_P0062663 Pdzk1 protein_coding protein_coding MGP_AJ_T0018017.1 MGP_AJ_G0015505.1 mouse_genomes_project 3 146273430 146285686 + Gm43574 processed_transcript processed_transcript MGP_AJ_T0010561.1 MGP_AJ_G0008683.1 mouse_genomes_project 3 140661228 140661315 - Mir6381 miRNA miRNA MGP_AJ_T0098964.1 MGP_AJ_G0036941.1 mouse_genomes_project 3 92257839 92259094 - Gm43768 sense_intronic sense_intronic MGP_AJ_T0007710.1 MGP_AJ_G0006301.1 mouse_genomes_project 3 128939317 128942069 + Gm43351 lincRNA lincRNA MGP_AJ_T0007491.1 MGP_AJ_G0006134.1 mouse_genomes_project 3 26902852 27020043 - Gm33206 lincRNA lincRNA MGP_AJ_T0014214.1 MGP_AJ_G0012309.1 mouse_genomes_project 3 98876971 98877470 + processed_pseudogene processed_pseudogene MGP_AJ_T0062173.1 MGP_AJ_G0027471.1 mouse_genomes_project 3 90127726 90130501 - MGP_AJ_P0062173 2210017I01Rik protein_coding protein_coding MGP_AJ_T0007540.1 MGP_AJ_G0006171.1 mouse_genomes_project 3 46108162 46124668 + Gm31415 lincRNA lincRNA MGP_AJ_T0060489.1 MGP_AJ_G0027110.1 mouse_genomes_project 3 31800861 31802912 + MGP_AJ_P0060489 Sox2 protein_coding protein_coding MGP_AJ_T0062355.1 MGP_AJ_G0027528.1 mouse_genomes_project 3 92868820 92869761 - Scnm1 protein_coding retained_intron MGP_AJ_T0062356.1 MGP_AJ_G0027528.1 mouse_genomes_project 3 92868821 92872667 - Scnm1 protein_coding retained_intron MGP_AJ_T0062357.1 MGP_AJ_G0027528.1 mouse_genomes_project 3 92868823 92869390 - Scnm1 protein_coding retained_intron MGP_AJ_T0062358.1 MGP_AJ_G0027528.1 mouse_genomes_project 3 92868825 92869563 - Scnm1 protein_coding retained_intron MGP_AJ_T0062359.1 MGP_AJ_G0027528.1 mouse_genomes_project 3 92868825 92872789 - MGP_AJ_P0062359 Scnm1 protein_coding protein_coding MGP_AJ_T0062360.1 MGP_AJ_G0027528.1 mouse_genomes_project 3 92868827 92870159 - Scnm1 protein_coding processed_transcript MGP_AJ_T0062361.1 MGP_AJ_G0027528.1 mouse_genomes_project 3 92868830 92872905 - MGP_AJ_P0062361 Scnm1 protein_coding protein_coding MGP_AJ_T0062362.1 MGP_AJ_G0027528.1 mouse_genomes_project 3 92869394 92872833 - Scnm1 protein_coding retained_intron MGP_AJ_T0014344.1 MGP_AJ_G0012439.1 mouse_genomes_project 3 136648073 136648740 - processed_pseudogene processed_pseudogene MGP_AJ_T0001333.1 MGP_AJ_G0001257.1 mouse_genomes_project 3 125271124 125274324 - TEC TEC MGP_AJ_T0101117.1 MGP_AJ_G0039083.1 mouse_genomes_project 3 43302001 43302133 + Gm26081 snoRNA snoRNA MGP_AJ_T0062604.1 MGP_AJ_G0027582.1 mouse_genomes_project 3 94339293 94342981 + MGP_AJ_P0062604 Gm16253 protein_coding protein_coding MGP_AJ_T0062925.1 MGP_AJ_G0027658.1 mouse_genomes_project 3 101743939 101752466 - MGP_AJ_P0062925 Dclre1b protein_coding protein_coding MGP_AJ_T0062926.1 MGP_AJ_G0027658.1 mouse_genomes_project 3 101746248 101752703 - Dclre1b protein_coding retained_intron MGP_AJ_T0062927.1 MGP_AJ_G0027658.1 mouse_genomes_project 3 101746266 101751558 - MGP_AJ_P0062927 Dclre1b protein_coding protein_coding MGP_AJ_T0062928.1 MGP_AJ_G0027658.1 mouse_genomes_project 3 101746962 101751015 - Dclre1b protein_coding retained_intron MGP_AJ_T0062929.1 MGP_AJ_G0027658.1 mouse_genomes_project 3 101747390 101752570 - MGP_AJ_P0062929 Dclre1b protein_coding nonsense_mediated_decay MGP_AJ_T0062930.1 MGP_AJ_G0027658.1 mouse_genomes_project 3 101749296 101752767 - MGP_AJ_P0062930 Dclre1b protein_coding protein_coding MGP_AJ_T0014356.1 MGP_AJ_G0012451.1 mouse_genomes_project 3 140578136 140578772 + processed_pseudogene processed_pseudogene MGP_AJ_T0061553.1 MGP_AJ_G0027341.1 mouse_genomes_project 3 85114883 85117197 + Nes protein_coding retained_intron MGP_AJ_T0061554.1 MGP_AJ_G0027341.1 mouse_genomes_project 3 85114898 85124711 + MGP_AJ_P0061554 Nes protein_coding protein_coding MGP_AJ_T0061555.1 MGP_AJ_G0027341.1 mouse_genomes_project 3 85114934 85124711 + MGP_AJ_P0061555 Nes protein_coding protein_coding MGP_AJ_T0004203.1 MGP_AJ_G0003701.1 mouse_genomes_project 3 16358121 16371431 + Gm16093 antisense antisense MGP_AJ_T0007482.1 MGP_AJ_G0006125.1 mouse_genomes_project 3 18428882 18429601 - Gm29137 lincRNA lincRNA MGP_AJ_T0014100.1 MGP_AJ_G0012195.1 mouse_genomes_project 3 65530601 65531186 + processed_pseudogene processed_pseudogene MGP_AJ_T0062183.1 MGP_AJ_G0027480.1 mouse_genomes_project 3 90262687 90264245 - MGP_AJ_P0062183 Gm38119 protein_coding protein_coding MGP_AJ_T0014007.1 MGP_AJ_G0012102.1 mouse_genomes_project 3 36264827 36265200 - processed_pseudogene processed_pseudogene MGP_AJ_T0014338.1 MGP_AJ_G0012433.1 mouse_genomes_project 3 135697790 135698514 - processed_pseudogene processed_pseudogene MGP_AJ_T0010544.1 MGP_AJ_G0008666.1 mouse_genomes_project 3 116503652 116503725 + Mir137 miRNA miRNA MGP_AJ_T0062782.1 MGP_AJ_G0027628.1 mouse_genomes_project 3 98745815 98818786 + MGP_AJ_P0062782 Vtcn1 protein_coding protein_coding MGP_AJ_T0014265.1 MGP_AJ_G0012360.1 mouse_genomes_project 3 111775889 111776147 + processed_pseudogene processed_pseudogene MGP_AJ_T0014016.1 MGP_AJ_G0012111.1 mouse_genomes_project 3 40319948 40320406 + processed_pseudogene processed_pseudogene MGP_AJ_T0061078.1 MGP_AJ_G0027224.1 mouse_genomes_project 3 61097551 61127792 - MGP_AJ_P0061078 Slc33a1 protein_coding protein_coding MGP_AJ_T0061079.1 MGP_AJ_G0027224.1 mouse_genomes_project 3 61105393 61127894 - MGP_AJ_P0061079 Slc33a1 protein_coding protein_coding MGP_AJ_T0061080.1 MGP_AJ_G0027224.1 mouse_genomes_project 3 61105477 61127498 - MGP_AJ_P0061080 Slc33a1 protein_coding protein_coding MGP_AJ_T0001226.1 MGP_AJ_G0001150.1 mouse_genomes_project 3 55584742 55585934 + TEC TEC MGP_AJ_T0060123.1 MGP_AJ_G0027038.1 mouse_genomes_project 3 11696878 11721610 + MGP_AJ_P0060123 E2f5 protein_coding protein_coding MGP_AJ_T0060124.1 MGP_AJ_G0027038.1 mouse_genomes_project 3 11696908 11721609 + MGP_AJ_P0060124 E2f5 protein_coding protein_coding MGP_AJ_T0007569.1 MGP_AJ_G0006193.1 mouse_genomes_project 3 64740220 64742317 - Gm35299 lincRNA lincRNA MGP_AJ_T0013961.1 MGP_AJ_G0012056.1 mouse_genomes_project 3 19176834 19177267 + processed_pseudogene processed_pseudogene MGP_AJ_T0062170.1 MGP_AJ_G0027469.1 mouse_genomes_project 3 90090837 90093671 - MGP_AJ_P0062170 Ivl protein_coding protein_coding MGP_AJ_T0014200.1 MGP_AJ_G0012295.1 mouse_genomes_project 3 94433151 94433631 - processed_pseudogene processed_pseudogene MGP_AJ_T0064522.1 MGP_AJ_G0027972.1 mouse_genomes_project 3 156196104 156255359 + MGP_AJ_P0064522 Ankrd13c protein_coding nonsense_mediated_decay MGP_AJ_T0064523.1 MGP_AJ_G0027972.1 mouse_genomes_project 3 156196279 156253747 + MGP_AJ_P0064523 Ankrd13c protein_coding protein_coding MGP_AJ_T0064524.1 MGP_AJ_G0027972.1 mouse_genomes_project 3 156196279 156255966 + MGP_AJ_P0064524 Ankrd13c protein_coding protein_coding MGP_AJ_T0064525.1 MGP_AJ_G0027972.1 mouse_genomes_project 3 156196331 156254775 + Ankrd13c protein_coding retained_intron MGP_AJ_T0064526.1 MGP_AJ_G0027972.1 mouse_genomes_project 3 156236328 156242540 + Ankrd13c protein_coding retained_intron MGP_AJ_T0064527.1 MGP_AJ_G0027972.1 mouse_genomes_project 3 156239518 156251836 + Ankrd13c protein_coding retained_intron MGP_AJ_T0064528.1 MGP_AJ_G0027972.1 mouse_genomes_project 3 156241430 156248957 + Ankrd13c protein_coding processed_transcript MGP_AJ_T0064529.1 MGP_AJ_G0027972.1 mouse_genomes_project 3 156242008 156248927 + Ankrd13c protein_coding retained_intron MGP_AJ_T0064530.1 MGP_AJ_G0027972.1 mouse_genomes_project 3 156246320 156250934 + Ankrd13c protein_coding retained_intron MGP_AJ_T0064531.1 MGP_AJ_G0027972.1 mouse_genomes_project 3 156247235 156248973 + Ankrd13c protein_coding retained_intron MGP_AJ_T0062329.1 MGP_AJ_G0027524.1 mouse_genomes_project 3 92769630 92780506 - MGP_AJ_P0062329 Psmd4 protein_coding protein_coding MGP_AJ_T0062330.1 MGP_AJ_G0027524.1 mouse_genomes_project 3 92769633 92780444 - MGP_AJ_P0062330 Psmd4 protein_coding protein_coding MGP_AJ_T0062331.1 MGP_AJ_G0027524.1 mouse_genomes_project 3 92769640 92772201 - MGP_AJ_P0062331 Psmd4 protein_coding protein_coding MGP_AJ_T0062332.1 MGP_AJ_G0027524.1 mouse_genomes_project 3 92769641 92780440 - Psmd4 protein_coding retained_intron MGP_AJ_T0062333.1 MGP_AJ_G0027524.1 mouse_genomes_project 3 92769641 92780435 - MGP_AJ_P0062333 Psmd4 protein_coding protein_coding MGP_AJ_T0062334.1 MGP_AJ_G0027524.1 mouse_genomes_project 3 92769859 92780437 - Psmd4 protein_coding retained_intron MGP_AJ_T0062335.1 MGP_AJ_G0027524.1 mouse_genomes_project 3 92769864 92770850 - Psmd4 protein_coding retained_intron MGP_AJ_T0062336.1 MGP_AJ_G0027524.1 mouse_genomes_project 3 92772756 92780442 - Psmd4 protein_coding processed_transcript MGP_AJ_T0001216.1 MGP_AJ_G0001140.1 mouse_genomes_project 3 52546489 52549882 + TEC TEC MGP_AJ_T0001365.1 MGP_AJ_G0001288.1 mouse_genomes_project 3 134762206 134763729 + TEC TEC MGP_AJ_T0013921.1 MGP_AJ_G0012016.1 mouse_genomes_project 3 8157217 8157971 - processed_pseudogene processed_pseudogene MGP_AJ_T0062818.1 MGP_AJ_G0027639.1 mouse_genomes_project 3 100013524 100073747 + MGP_AJ_P0062818 Casq2 protein_coding protein_coding MGP_AJ_T0062819.1 MGP_AJ_G0027639.1 mouse_genomes_project 3 100013655 100073747 + MGP_AJ_P0062819 Casq2 protein_coding protein_coding MGP_AJ_T0062820.1 MGP_AJ_G0027639.1 mouse_genomes_project 3 100013748 100072565 + MGP_AJ_P0062820 Casq2 protein_coding protein_coding MGP_AJ_T0062821.1 MGP_AJ_G0027639.1 mouse_genomes_project 3 100053076 100072582 + Casq2 protein_coding processed_transcript MGP_AJ_T0062822.1 MGP_AJ_G0027639.1 mouse_genomes_project 3 100071284 100072819 + Casq2 protein_coding retained_intron MGP_AJ_T0013935.1 MGP_AJ_G0012030.1 mouse_genomes_project 3 11627151 11629062 - processed_pseudogene processed_pseudogene MGP_AJ_T0014174.1 MGP_AJ_G0012269.1 mouse_genomes_project 3 90191906 90192534 + processed_pseudogene processed_pseudogene MGP_AJ_T0062163.1 MGP_AJ_G0027462.1 mouse_genomes_project 3 89950938 89951821 - MGP_AJ_P0062163 Gm9774 protein_coding protein_coding MGP_AJ_T0063777.1 MGP_AJ_G0027834.1 mouse_genomes_project 3 127949717 127966729 + MGP_AJ_P0063777 Pla2g12a protein_coding protein_coding MGP_AJ_T0063778.1 MGP_AJ_G0027834.1 mouse_genomes_project 3 127949925 127965843 + MGP_AJ_P0063778 Pla2g12a protein_coding nonsense_mediated_decay MGP_AJ_T0063779.1 MGP_AJ_G0027834.1 mouse_genomes_project 3 127952291 127965861 + MGP_AJ_P0063779 Pla2g12a protein_coding protein_coding MGP_AJ_T0063780.1 MGP_AJ_G0027834.1 mouse_genomes_project 3 127963733 127966725 + Pla2g12a protein_coding retained_intron MGP_AJ_T0013967.1 MGP_AJ_G0012062.1 mouse_genomes_project 3 23533913 23535880 + processed_pseudogene processed_pseudogene MGP_AJ_T0102572.1 MGP_AJ_G0040314.1 mouse_genomes_project 3 111233711 111251760 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0098668.1 MGP_AJ_G0036652.1 mouse_genomes_project 3 36767541 36767660 - n-R5s195 rRNA rRNA MGP_AJ_T0061363.1 MGP_AJ_G0027297.1 mouse_genomes_project 3 80133708 80143484 - MGP_AJ_P0061363 Fgb protein_coding protein_coding MGP_AJ_T0004367.1 MGP_AJ_G0003811.1 mouse_genomes_project 3 124451819 124458221 - Gm17225 antisense antisense MGP_AJ_T0063595.1 MGP_AJ_G0027805.1 mouse_genomes_project 3 121110719 121140022 - MGP_AJ_P0063595 Myoz2 protein_coding protein_coding MGP_AJ_T0063596.1 MGP_AJ_G0027805.1 mouse_genomes_project 3 121111030 121139851 - MGP_AJ_P0063596 Myoz2 protein_coding nonsense_mediated_decay MGP_AJ_T0063597.1 MGP_AJ_G0027805.1 mouse_genomes_project 3 121111115 121140011 - Myoz2 protein_coding processed_transcript MGP_AJ_T0063598.1 MGP_AJ_G0027805.1 mouse_genomes_project 3 121118249 121139970 - Myoz2 protein_coding processed_transcript MGP_AJ_T0063599.1 MGP_AJ_G0027805.1 mouse_genomes_project 3 121129149 121139959 - Myoz2 protein_coding retained_intron MGP_AJ_T0060823.1 MGP_AJ_G0027169.1 mouse_genomes_project 3 50883386 50894970 - MGP_AJ_P0060823 Ufm1 protein_coding protein_coding MGP_AJ_T0060824.1 MGP_AJ_G0027169.1 mouse_genomes_project 3 50888517 50894385 - Ufm1 protein_coding retained_intron MGP_AJ_T0060825.1 MGP_AJ_G0027169.1 mouse_genomes_project 3 50888638 50894458 - MGP_AJ_P0060825 Ufm1 protein_coding nonsense_mediated_decay MGP_AJ_T0060826.1 MGP_AJ_G0027169.1 mouse_genomes_project 3 50889506 50894462 - MGP_AJ_P0060826 Ufm1 protein_coding protein_coding MGP_AJ_T0060827.1 MGP_AJ_G0027169.1 mouse_genomes_project 3 50890311 50894458 - Ufm1 protein_coding retained_intron MGP_AJ_T0007652.1 MGP_AJ_G0006256.1 mouse_genomes_project 3 100527245 100529466 + Gm42678 lincRNA lincRNA MGP_AJ_T0061550.1 MGP_AJ_G0027339.1 mouse_genomes_project 3 85072859 85083784 + MGP_AJ_P0061550 Isg20l2 protein_coding protein_coding MGP_AJ_T0010501.1 MGP_AJ_G0008623.1 mouse_genomes_project 3 26559252 26559350 + Mir551b miRNA miRNA MGP_AJ_T0060742.1 MGP_AJ_G0027152.1 mouse_genomes_project 3 46924312 47511789 - MGP_AJ_P0060742 Slc7a11 protein_coding protein_coding MGP_AJ_T0060743.1 MGP_AJ_G0027152.1 mouse_genomes_project 3 47430820 47511786 - MGP_AJ_P0060743 Slc7a11 protein_coding protein_coding MGP_AJ_T0060744.1 MGP_AJ_G0027152.1 mouse_genomes_project 3 47435705 47437295 - Slc7a11 protein_coding processed_transcript MGP_AJ_T0060745.1 MGP_AJ_G0027152.1 mouse_genomes_project 3 47483424 47511789 - Slc7a11 protein_coding retained_intron MGP_AJ_T0060746.1 MGP_AJ_G0027152.1 mouse_genomes_project 3 47509107 47511780 - Slc7a11 protein_coding retained_intron MGP_AJ_T0101125.1 MGP_AJ_G0039091.1 mouse_genomes_project 3 61529760 61529918 - Gm23897 snoRNA snoRNA MGP_AJ_T0013954.1 MGP_AJ_G0012049.1 mouse_genomes_project 3 17035128 17035688 + processed_pseudogene processed_pseudogene MGP_AJ_T0099864.1 MGP_AJ_G0037830.1 mouse_genomes_project 3 102043721 102043823 + Gm23830 snRNA snRNA MGP_AJ_T0060627.1 MGP_AJ_G0027133.1 mouse_genomes_project 3 34784474 34789166 + MGP_AJ_P0060627 Spry1 protein_coding protein_coding MGP_AJ_T0060628.1 MGP_AJ_G0027133.1 mouse_genomes_project 3 34784485 34789166 + MGP_AJ_P0060628 Spry1 protein_coding protein_coding MGP_AJ_T0060629.1 MGP_AJ_G0027133.1 mouse_genomes_project 3 34784607 34789166 + MGP_AJ_P0060629 Spry1 protein_coding protein_coding MGP_AJ_T0014071.1 MGP_AJ_G0012166.1 mouse_genomes_project 3 57183234 57183749 - processed_pseudogene processed_pseudogene MGP_AJ_T0098673.1 MGP_AJ_G0036657.1 mouse_genomes_project 3 125782306 125782392 + Gm23279 rRNA rRNA MGP_AJ_T0061446.1 MGP_AJ_G0027318.1 mouse_genomes_project 3 83349261 83891765 + MGP_AJ_P0061446 Lrba protein_coding protein_coding MGP_AJ_T0061447.1 MGP_AJ_G0027318.1 mouse_genomes_project 3 83349261 83855454 + MGP_AJ_P0061447 Lrba protein_coding protein_coding MGP_AJ_T0061448.1 MGP_AJ_G0027318.1 mouse_genomes_project 3 83349261 83886031 + MGP_AJ_P0061448 Lrba protein_coding protein_coding MGP_AJ_T0061449.1 MGP_AJ_G0027318.1 mouse_genomes_project 3 83469498 83470837 + Lrba protein_coding retained_intron MGP_AJ_T0061450.1 MGP_AJ_G0027318.1 mouse_genomes_project 3 83650299 83716867 + Lrba protein_coding retained_intron MGP_AJ_T0061453.1 MGP_AJ_G0027318.1 mouse_genomes_project 3 83654998 83730617 + Lrba protein_coding retained_intron MGP_AJ_T0061454.1 MGP_AJ_G0027318.1 mouse_genomes_project 3 83656460 83891768 + MGP_AJ_P0061454 Lrba protein_coding protein_coding MGP_AJ_T0061176.1 MGP_AJ_G0027252.1 mouse_genomes_project 3 66086580 66190258 - Ift80 protein_coding retained_intron MGP_AJ_T0061177.1 MGP_AJ_G0027252.1 mouse_genomes_project 3 66086580 66190242 - MGP_AJ_P0061177 Ift80 protein_coding protein_coding MGP_AJ_T0061178.1 MGP_AJ_G0027252.1 mouse_genomes_project 3 66086606 66190269 - MGP_AJ_P0061178 Ift80 protein_coding protein_coding MGP_AJ_T0061179.1 MGP_AJ_G0027252.1 mouse_genomes_project 3 66086606 66180328 - MGP_AJ_P0061179 Ift80 protein_coding protein_coding MGP_AJ_T0061180.1 MGP_AJ_G0027252.1 mouse_genomes_project 3 66087726 66108797 - Ift80 protein_coding retained_intron MGP_AJ_T0061181.1 MGP_AJ_G0027252.1 mouse_genomes_project 3 66103484 66103834 - Ift80 protein_coding retained_intron MGP_AJ_T0061182.1 MGP_AJ_G0027252.1 mouse_genomes_project 3 66106163 66190197 - Ift80 protein_coding retained_intron MGP_AJ_T0061183.1 MGP_AJ_G0027252.1 mouse_genomes_project 3 66125411 66159441 - Ift80 protein_coding processed_transcript MGP_AJ_T0061184.1 MGP_AJ_G0027252.1 mouse_genomes_project 3 66149337 66190176 - MGP_AJ_P0061184 Ift80 protein_coding protein_coding MGP_AJ_T0061185.1 MGP_AJ_G0027252.1 mouse_genomes_project 3 66153622 66190183 - MGP_AJ_P0061185 Ift80 protein_coding protein_coding MGP_AJ_T0061186.1 MGP_AJ_G0027252.1 mouse_genomes_project 3 66158999 66190087 - Ift80 protein_coding processed_transcript MGP_AJ_T0061187.1 MGP_AJ_G0027252.1 mouse_genomes_project 3 66187993 66190224 - Ift80 protein_coding retained_intron MGP_AJ_T0063619.1 MGP_AJ_G0027809.1 mouse_genomes_project 3 121547397 121603588 + MGP_AJ_P0063619 Prss12 protein_coding protein_coding MGP_AJ_T0007709.1 MGP_AJ_G0006300.1 mouse_genomes_project 3 128932577 128934076 + Gm36520 lincRNA lincRNA MGP_AJ_T0099887.1 MGP_AJ_G0037853.1 mouse_genomes_project 3 150115407 150115469 - Gm25056 snRNA snRNA MGP_AJ_T0007634.1 MGP_AJ_G0006241.1 mouse_genomes_project 3 94106673 94116676 - lincRNA lincRNA MGP_AJ_T0014112.1 MGP_AJ_G0012207.1 mouse_genomes_project 3 67303953 67304233 - processed_pseudogene processed_pseudogene MGP_AJ_T0063962.1 MGP_AJ_G0027868.1 mouse_genomes_project 3 133867258 133932165 + MGP_AJ_P0063962 Slc39a8 protein_coding protein_coding MGP_AJ_T0063963.1 MGP_AJ_G0027868.1 mouse_genomes_project 3 133867633 133902371 + Slc39a8 protein_coding retained_intron MGP_AJ_T0063964.1 MGP_AJ_G0027868.1 mouse_genomes_project 3 133867636 133932343 + MGP_AJ_P0063964 Slc39a8 protein_coding protein_coding MGP_AJ_T0063965.1 MGP_AJ_G0027868.1 mouse_genomes_project 3 133867852 133932343 + MGP_AJ_P0063965 Slc39a8 protein_coding protein_coding MGP_AJ_T0063966.1 MGP_AJ_G0027868.1 mouse_genomes_project 3 133868152 133932157 + MGP_AJ_P0063966 Slc39a8 protein_coding protein_coding MGP_AJ_T0063967.1 MGP_AJ_G0027868.1 mouse_genomes_project 3 133927929 133932339 + Slc39a8 protein_coding retained_intron MGP_AJ_T0013993.1 MGP_AJ_G0012088.1 mouse_genomes_project 3 33844978 33845230 - processed_pseudogene processed_pseudogene MGP_AJ_T0010504.1 MGP_AJ_G0008626.1 mouse_genomes_project 3 30449404 30449509 - Gm27974 miRNA miRNA MGP_AJ_T0004278.1 MGP_AJ_G0003756.1 mouse_genomes_project 3 86561832 86565314 + Gm15998 antisense antisense MGP_AJ_T0014231.1 MGP_AJ_G0012326.1 mouse_genomes_project 3 102364271 102364989 - processed_pseudogene processed_pseudogene MGP_AJ_T0007698.1 MGP_AJ_G0006291.1 mouse_genomes_project 3 125906483 125910164 + Gm42586 lincRNA lincRNA MGP_AJ_T0001152.1 MGP_AJ_G0001078.1 mouse_genomes_project 3 34489436 34491900 + TEC TEC MGP_AJ_T0007644.1 MGP_AJ_G0006250.1 mouse_genomes_project 3 98607194 98615343 + Gm43464 lincRNA lincRNA MGP_AJ_T0014303.1 MGP_AJ_G0012398.1 mouse_genomes_project 3 125553011 125553368 + processed_pseudogene processed_pseudogene MGP_AJ_T0013936.1 MGP_AJ_G0012031.1 mouse_genomes_project 3 11745810 11746099 - processed_pseudogene processed_pseudogene MGP_AJ_T0061328.1 MGP_AJ_G0027285.1 mouse_genomes_project 3 79043930 79064075 - MGP_AJ_P0061328 Tdo2 protein_coding protein_coding MGP_AJ_T0061329.1 MGP_AJ_G0027285.1 mouse_genomes_project 3 79045563 79050914 - Tdo2 protein_coding processed_transcript MGP_AJ_T0061330.1 MGP_AJ_G0027285.1 mouse_genomes_project 3 79045630 79064075 - MGP_AJ_P0061330 Tdo2 protein_coding protein_coding MGP_AJ_T0061331.1 MGP_AJ_G0027285.1 mouse_genomes_project 3 79047877 79050866 - Tdo2 protein_coding retained_intron MGP_AJ_T0004351.1 MGP_AJ_G0003798.1 mouse_genomes_project 3 107079766 107081837 + Gm43221 antisense antisense MGP_AJ_T0004417.1 MGP_AJ_G0003848.1 mouse_genomes_project 3 156315337 156324267 - B230334C09Rik antisense antisense MGP_AJ_T0063401.1 MGP_AJ_G0027768.1 mouse_genomes_project 3 114514475 114533567 - MGP_AJ_P0063401 Rtca protein_coding protein_coding MGP_AJ_T0063402.1 MGP_AJ_G0027768.1 mouse_genomes_project 3 114514752 114521324 - Rtca protein_coding retained_intron MGP_AJ_T0063403.1 MGP_AJ_G0027768.1 mouse_genomes_project 3 114519509 114533383 - MGP_AJ_P0063403 Rtca protein_coding nonsense_mediated_decay MGP_AJ_T0063404.1 MGP_AJ_G0027768.1 mouse_genomes_project 3 114521049 114533424 - MGP_AJ_P0063404 Rtca protein_coding protein_coding MGP_AJ_T0063405.1 MGP_AJ_G0027768.1 mouse_genomes_project 3 114524904 114533492 - MGP_AJ_P0063405 Rtca protein_coding nonsense_mediated_decay MGP_AJ_T0061641.1 MGP_AJ_G0027360.1 mouse_genomes_project 3 85585031 85599646 - MGP_AJ_P0061641 Slc25a44 protein_coding protein_coding MGP_AJ_T0061642.1 MGP_AJ_G0027360.1 mouse_genomes_project 3 85585031 85599645 - MGP_AJ_P0061642 Slc25a44 protein_coding protein_coding MGP_AJ_T0061643.1 MGP_AJ_G0027360.1 mouse_genomes_project 3 85585032 85599677 - MGP_AJ_P0061643 Slc25a44 protein_coding protein_coding MGP_AJ_T0061644.1 MGP_AJ_G0027360.1 mouse_genomes_project 3 85585032 85599650 - MGP_AJ_P0061644 Slc25a44 protein_coding protein_coding MGP_AJ_T0101155.1 MGP_AJ_G0039121.1 mouse_genomes_project 3 110208342 110208468 - Gm25519 snoRNA snoRNA MGP_AJ_T0063952.1 MGP_AJ_G0027867.1 mouse_genomes_project 3 133622890 133731331 - MGP_AJ_P0063952 Nfkb1 protein_coding protein_coding MGP_AJ_T0063953.1 MGP_AJ_G0027867.1 mouse_genomes_project 3 133622892 133646811 - MGP_AJ_P0063953 Nfkb1 protein_coding protein_coding MGP_AJ_T0063954.1 MGP_AJ_G0027867.1 mouse_genomes_project 3 133622980 133642390 - MGP_AJ_P0063954 Nfkb1 protein_coding nonsense_mediated_decay MGP_AJ_T0063955.1 MGP_AJ_G0027867.1 mouse_genomes_project 3 133623117 133647024 - Nfkb1 protein_coding retained_intron MGP_AJ_T0063956.1 MGP_AJ_G0027867.1 mouse_genomes_project 3 133623514 133707484 - MGP_AJ_P0063956 Nfkb1 protein_coding protein_coding MGP_AJ_T0063957.1 MGP_AJ_G0027867.1 mouse_genomes_project 3 133623517 133709139 - MGP_AJ_P0063957 Nfkb1 protein_coding nonsense_mediated_decay MGP_AJ_T0063958.1 MGP_AJ_G0027867.1 mouse_genomes_project 3 133629216 133632974 - Nfkb1 protein_coding processed_transcript MGP_AJ_T0063959.1 MGP_AJ_G0027867.1 mouse_genomes_project 3 133640452 133642453 - Nfkb1 protein_coding retained_intron MGP_AJ_T0063960.1 MGP_AJ_G0027867.1 mouse_genomes_project 3 133649176 133731332 - Nfkb1 protein_coding retained_intron MGP_AJ_T0063961.1 MGP_AJ_G0027867.1 mouse_genomes_project 3 133656615 133660738 - Nfkb1 protein_coding retained_intron MGP_AJ_T0004398.1 MGP_AJ_G0003833.1 mouse_genomes_project 3 142919537 142927431 + antisense antisense MGP_AJ_T0061464.1 MGP_AJ_G0027321.1 mouse_genomes_project 3 84094923 84097011 + MGP_AJ_P0061464 protein_coding protein_coding MGP_AJ_T0062004.1 MGP_AJ_G0027416.1 mouse_genomes_project 3 87320570 87331737 + MGP_AJ_P0062004 4933434E20Rik protein_coding protein_coding MGP_AJ_T0062005.1 MGP_AJ_G0027416.1 mouse_genomes_project 3 87321748 87334537 + MGP_AJ_P0062005 4933434E20Rik protein_coding protein_coding MGP_AJ_T0062006.1 MGP_AJ_G0027416.1 mouse_genomes_project 3 87321763 87327785 + 4933434E20Rik protein_coding processed_transcript MGP_AJ_T0062007.1 MGP_AJ_G0027416.1 mouse_genomes_project 3 87321771 87328231 + MGP_AJ_P0062007 4933434E20Rik protein_coding protein_coding MGP_AJ_T0062008.1 MGP_AJ_G0027416.1 mouse_genomes_project 3 87321776 87330011 + MGP_AJ_P0062008 4933434E20Rik protein_coding protein_coding MGP_AJ_T0062009.1 MGP_AJ_G0027416.1 mouse_genomes_project 3 87321788 87322784 + 4933434E20Rik protein_coding retained_intron MGP_AJ_T0062010.1 MGP_AJ_G0027416.1 mouse_genomes_project 3 87321805 87333641 + MGP_AJ_P0062010 4933434E20Rik protein_coding nonsense_mediated_decay MGP_AJ_T0062011.1 MGP_AJ_G0027416.1 mouse_genomes_project 3 87321805 87333638 + MGP_AJ_P0062011 4933434E20Rik protein_coding protein_coding MGP_AJ_T0062012.1 MGP_AJ_G0027416.1 mouse_genomes_project 3 87322684 87328001 + 4933434E20Rik protein_coding retained_intron MGP_AJ_T0062013.1 MGP_AJ_G0027416.1 mouse_genomes_project 3 87327778 87332015 + 4933434E20Rik protein_coding retained_intron MGP_AJ_T0062014.1 MGP_AJ_G0027416.1 mouse_genomes_project 3 87333991 87339541 + MGP_AJ_P0062014 4933434E20Rik protein_coding protein_coding MGP_AJ_T0007724.1 MGP_AJ_G0006314.1 mouse_genomes_project 3 134488831 134503770 - 1700030L20Rik lincRNA lincRNA MGP_AJ_T0014190.1 MGP_AJ_G0012285.1 mouse_genomes_project 3 93206168 93206520 + processed_pseudogene processed_pseudogene MGP_AJ_T0099830.1 MGP_AJ_G0037796.1 mouse_genomes_project 3 57300772 57300878 - Gm24382 snRNA snRNA MGP_AJ_T0011550.1 MGP_AJ_G0009672.1 mouse_genomes_project 3 119406404 119406672 + Gm26027 misc_RNA misc_RNA MGP_AJ_T0060045.1 MGP_AJ_G0027015.1 mouse_genomes_project 3 4667992 4716318 - MGP_AJ_P0060045 Il7 protein_coding protein_coding MGP_AJ_T0060046.1 MGP_AJ_G0027015.1 mouse_genomes_project 3 4670026 4708216 - MGP_AJ_P0060046 Il7 protein_coding protein_coding MGP_AJ_T0060047.1 MGP_AJ_G0027015.1 mouse_genomes_project 3 4671119 4715484 - MGP_AJ_P0060047 Il7 protein_coding protein_coding MGP_AJ_T0060048.1 MGP_AJ_G0027015.1 mouse_genomes_project 3 4671174 4716351 - MGP_AJ_P0060048 Il7 protein_coding protein_coding MGP_AJ_T0060049.1 MGP_AJ_G0027015.1 mouse_genomes_project 3 4671926 4716332 - Il7 protein_coding processed_transcript MGP_AJ_T0061302.1 MGP_AJ_G0027280.1 mouse_genomes_project 3 76987958 77050952 + MGP_AJ_P0061302 Fam198b protein_coding protein_coding MGP_AJ_T0061303.1 MGP_AJ_G0027280.1 mouse_genomes_project 3 76988022 77041416 + MGP_AJ_P0061303 Fam198b protein_coding protein_coding MGP_AJ_T0061304.1 MGP_AJ_G0027280.1 mouse_genomes_project 3 76988356 76989652 + MGP_AJ_P0061304 Fam198b protein_coding protein_coding MGP_AJ_T0061305.1 MGP_AJ_G0027280.1 mouse_genomes_project 3 76989338 77050950 + MGP_AJ_P0061305 Fam198b protein_coding protein_coding MGP_AJ_T0061306.1 MGP_AJ_G0027280.1 mouse_genomes_project 3 76989464 76993054 + Fam198b protein_coding retained_intron MGP_AJ_T0007592.1 MGP_AJ_G0006212.1 mouse_genomes_project 3 78883941 78887077 + A830029E22Rik lincRNA lincRNA MGP_AJ_T0007538.1 MGP_AJ_G0006169.1 mouse_genomes_project 3 45663072 45666434 - 1700018B24Rik lincRNA lincRNA MGP_AJ_T0001390.1 MGP_AJ_G0001313.1 mouse_genomes_project 3 153330769 153333559 + TEC TEC MGP_AJ_T0001324.1 MGP_AJ_G0001248.1 mouse_genomes_project 3 124770498 124774110 + TEC TEC MGP_AJ_T0099003.1 MGP_AJ_G0036980.1 mouse_genomes_project 3 102588537 102589818 + Gm43585 sense_intronic sense_intronic MGP_AJ_T0007492.1 MGP_AJ_G0006135.1 mouse_genomes_project 3 27017887 27049177 + Mannr lincRNA lincRNA MGP_AJ_T0098967.1 MGP_AJ_G0036944.1 mouse_genomes_project 3 97075971 97079440 + Gm42717 sense_intronic sense_intronic MGP_AJ_T0014099.1 MGP_AJ_G0012194.1 mouse_genomes_project 3 64928307 64929637 - processed_pseudogene processed_pseudogene MGP_AJ_T0001181.1 MGP_AJ_G0001107.1 mouse_genomes_project 3 47893029 47896807 - TEC TEC MGP_AJ_T0001142.1 MGP_AJ_G0001068.1 mouse_genomes_project 3 31213973 31215058 - TEC TEC MGP_AJ_T0060529.1 MGP_AJ_G0027116.1 mouse_genomes_project 3 33293723 33313049 + MGP_AJ_P0060529 D3Ertd254e protein_coding protein_coding MGP_AJ_T0060530.1 MGP_AJ_G0027116.1 mouse_genomes_project 3 33293868 33305381 + MGP_AJ_P0060530 D3Ertd254e protein_coding protein_coding MGP_AJ_T0060531.1 MGP_AJ_G0027116.1 mouse_genomes_project 3 33302228 33313042 + MGP_AJ_P0060531 D3Ertd254e protein_coding protein_coding MGP_AJ_T0007642.1 MGP_AJ_G0006248.1 mouse_genomes_project 3 98345089 98346394 + Gm43121 lincRNA lincRNA MGP_AJ_T0098988.1 MGP_AJ_G0036965.1 mouse_genomes_project 3 102008972 102010050 - Gm42696 sense_intronic sense_intronic MGP_AJ_T0007498.1 MGP_AJ_G0006140.1 mouse_genomes_project 3 31458124 31513360 - Gm38505 lincRNA lincRNA MGP_AJ_T0060424.1 MGP_AJ_G0027101.1 mouse_genomes_project 3 29895576 29912133 + MGP_AJ_P0060424 Actl6a protein_coding protein_coding MGP_AJ_T0060425.1 MGP_AJ_G0027101.1 mouse_genomes_project 3 29897785 29920493 + MGP_AJ_P0060425 Actl6a protein_coding protein_coding MGP_AJ_T0060426.1 MGP_AJ_G0027101.1 mouse_genomes_project 3 29897828 29899285 + Actl6a protein_coding retained_intron MGP_AJ_T0060427.1 MGP_AJ_G0027101.1 mouse_genomes_project 3 29898043 29912127 + MGP_AJ_P0060427 Actl6a protein_coding nonsense_mediated_decay MGP_AJ_T0060428.1 MGP_AJ_G0027101.1 mouse_genomes_project 3 29898442 29912176 + MGP_AJ_P0060428 Actl6a protein_coding protein_coding MGP_AJ_T0060429.1 MGP_AJ_G0027101.1 mouse_genomes_project 3 29900661 29901449 + Actl6a protein_coding retained_intron MGP_AJ_T0060430.1 MGP_AJ_G0027101.1 mouse_genomes_project 3 29901450 29920293 + MGP_AJ_P0060430 Actl6a protein_coding nonsense_mediated_decay MGP_AJ_T0060431.1 MGP_AJ_G0027101.1 mouse_genomes_project 3 29912086 29920488 + Actl6a protein_coding retained_intron MGP_AJ_T0099840.1 MGP_AJ_G0037806.1 mouse_genomes_project 3 83027255 83027362 - Gm26204 snRNA snRNA MGP_AJ_T0014225.1 MGP_AJ_G0012320.1 mouse_genomes_project 3 100805636 100805925 + processed_pseudogene processed_pseudogene MGP_AJ_T0014103.1 MGP_AJ_G0012198.1 mouse_genomes_project 3 66037873 66039195 + processed_pseudogene processed_pseudogene MGP_AJ_T0007639.1 MGP_AJ_G0006245.1 mouse_genomes_project 3 95732731 95770506 + Gm5544 lincRNA lincRNA MGP_AJ_T0017978.1 MGP_AJ_G0015493.1 mouse_genomes_project 3 103914919 103939960 + Gm42890 processed_transcript retained_intron MGP_AJ_T0017979.1 MGP_AJ_G0015493.1 mouse_genomes_project 3 103921532 103931823 + Gm42890 processed_transcript retained_intron MGP_AJ_T0014116.1 MGP_AJ_G0012211.1 mouse_genomes_project 3 68872253 68876860 + processed_pseudogene processed_pseudogene MGP_AJ_T0014250.1 MGP_AJ_G0012345.1 mouse_genomes_project 3 107975986 107976470 + processed_pseudogene processed_pseudogene MGP_AJ_T0098840.1 MGP_AJ_G0036824.1 mouse_genomes_project 3 85865921 85866048 + Gm25820 scaRNA scaRNA MGP_AJ_T0014334.1 MGP_AJ_G0012429.1 mouse_genomes_project 3 134101761 134103895 - processed_pseudogene processed_pseudogene MGP_AJ_T0098445.1 MGP_AJ_G0036429.1 mouse_genomes_project 3 152000520 152000602 + pseudogene pseudogene MGP_AJ_T0063412.1 MGP_AJ_G0027771.1 mouse_genomes_project 3 114608731 114643381 - MGP_AJ_P0063412 Trmt13 protein_coding protein_coding MGP_AJ_T0063413.1 MGP_AJ_G0027771.1 mouse_genomes_project 3 114608732 114622465 - MGP_AJ_P0063413 Trmt13 protein_coding nonsense_mediated_decay MGP_AJ_T0063414.1 MGP_AJ_G0027771.1 mouse_genomes_project 3 114608733 114622489 - MGP_AJ_P0063414 Trmt13 protein_coding nonsense_mediated_decay MGP_AJ_T0063415.1 MGP_AJ_G0027771.1 mouse_genomes_project 3 114608974 114611115 - Trmt13 protein_coding processed_transcript MGP_AJ_T0063416.1 MGP_AJ_G0027771.1 mouse_genomes_project 3 114611762 114622516 - Trmt13 protein_coding retained_intron MGP_AJ_T0063417.1 MGP_AJ_G0027771.1 mouse_genomes_project 3 114613449 114622314 - MGP_AJ_P0063417 Trmt13 protein_coding protein_coding MGP_AJ_T0063418.1 MGP_AJ_G0027771.1 mouse_genomes_project 3 114617198 114622297 - MGP_AJ_P0063418 Trmt13 protein_coding nonsense_mediated_decay MGP_AJ_T0063419.1 MGP_AJ_G0027771.1 mouse_genomes_project 3 114619618 114622430 - Trmt13 protein_coding retained_intron MGP_AJ_T0063420.1 MGP_AJ_G0027771.1 mouse_genomes_project 3 114621587 114622467 - MGP_AJ_P0063420 Trmt13 protein_coding protein_coding MGP_AJ_T0063425.1 MGP_AJ_G0027771.1 mouse_genomes_project 3 114623023 114642915 - Trmt13 protein_coding processed_transcript MGP_AJ_T0063427.1 MGP_AJ_G0027771.1 mouse_genomes_project 3 114642333 114643202 - Trmt13 protein_coding retained_intron MGP_AJ_T0099839.1 MGP_AJ_G0037805.1 mouse_genomes_project 3 76937440 76937543 + Gm26420 snRNA snRNA MGP_AJ_T0010530.1 MGP_AJ_G0008652.1 mouse_genomes_project 3 89481064 89481174 - Gm23697 miRNA miRNA MGP_AJ_T0102548.1 MGP_AJ_G0040290.1 mouse_genomes_project 3 85950939 86137335 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0014311.1 MGP_AJ_G0012406.1 mouse_genomes_project 3 128828785 128829083 + processed_pseudogene processed_pseudogene MGP_AJ_T0101158.1 MGP_AJ_G0039124.1 mouse_genomes_project 3 114077935 114078067 - Gm26344 snoRNA snoRNA MGP_AJ_T0064231.1 MGP_AJ_G0027926.1 mouse_genomes_project 3 144251995 144259212 + MGP_AJ_P0064231 Mcoln3 protein_coding protein_coding MGP_AJ_T0064232.1 MGP_AJ_G0027926.1 mouse_genomes_project 3 144256195 144276097 + MGP_AJ_P0064232 Mcoln3 protein_coding protein_coding MGP_AJ_T0064233.1 MGP_AJ_G0027926.1 mouse_genomes_project 3 144273370 144274954 + Mcoln3 protein_coding retained_intron MGP_AJ_T0099852.1 MGP_AJ_G0037818.1 mouse_genomes_project 3 87843907 87844013 + Gm24593 snRNA snRNA MGP_AJ_T0061261.1 MGP_AJ_G0027271.1 mouse_genomes_project 3 73236688 73872104 + MGP_AJ_P0061261 Fstl5 protein_coding protein_coding MGP_AJ_T0061262.1 MGP_AJ_G0027271.1 mouse_genomes_project 3 73236977 73707747 + Fstl5 protein_coding processed_transcript MGP_AJ_T0061263.1 MGP_AJ_G0027271.1 mouse_genomes_project 3 73238001 73870719 + MGP_AJ_P0061263 Fstl5 protein_coding protein_coding MGP_AJ_T0061264.1 MGP_AJ_G0027271.1 mouse_genomes_project 3 73749169 73752477 + Fstl5 protein_coding retained_intron MGP_AJ_T0061265.1 MGP_AJ_G0027271.1 mouse_genomes_project 3 73755793 73869632 + MGP_AJ_P0061265 Fstl5 protein_coding protein_coding MGP_AJ_T0010511.1 MGP_AJ_G0008633.1 mouse_genomes_project 3 43927180 43927295 - Mir6379 miRNA miRNA MGP_AJ_T0001285.1 MGP_AJ_G0001209.1 mouse_genomes_project 3 105940581 105942464 + TEC TEC MGP_AJ_T0013990.1 MGP_AJ_G0012085.1 mouse_genomes_project 3 33539348 33539846 - processed_pseudogene processed_pseudogene MGP_AJ_T0099858.1 MGP_AJ_G0037824.1 mouse_genomes_project 3 93549529 93549715 - Gm26361 snRNA snRNA MGP_AJ_T0060551.1 MGP_AJ_G0027122.1 mouse_genomes_project 3 33720982 33763749 - MGP_AJ_P0060551 Bbs7 protein_coding protein_coding MGP_AJ_T0060552.1 MGP_AJ_G0027122.1 mouse_genomes_project 3 33720982 33763837 - MGP_AJ_P0060552 Bbs7 protein_coding protein_coding MGP_AJ_T0060553.1 MGP_AJ_G0027122.1 mouse_genomes_project 3 33722713 33763645 - MGP_AJ_P0060553 Bbs7 protein_coding protein_coding MGP_AJ_T0060554.1 MGP_AJ_G0027122.1 mouse_genomes_project 3 33723624 33725136 - Bbs7 protein_coding retained_intron MGP_AJ_T0060555.1 MGP_AJ_G0027122.1 mouse_genomes_project 3 33759704 33763749 - Bbs7 protein_coding retained_intron MGP_AJ_T0060556.1 MGP_AJ_G0027122.1 mouse_genomes_project 3 33760531 33763749 - MGP_AJ_P0060556 Bbs7 protein_coding protein_coding MGP_AJ_T0064234.1 MGP_AJ_G0027927.1 mouse_genomes_project 3 144282546 144328517 + MGP_AJ_P0064234 Mcoln2 protein_coding protein_coding MGP_AJ_T0064235.1 MGP_AJ_G0027927.1 mouse_genomes_project 3 144282692 144305426 + Mcoln2 protein_coding retained_intron MGP_AJ_T0064236.1 MGP_AJ_G0027927.1 mouse_genomes_project 3 144282887 144328516 + MGP_AJ_P0064236 Mcoln2 protein_coding protein_coding MGP_AJ_T0064237.1 MGP_AJ_G0027927.1 mouse_genomes_project 3 144323346 144325490 + MGP_AJ_P0064237 Mcoln2 protein_coding protein_coding MGP_AJ_T0064238.1 MGP_AJ_G0027927.1 mouse_genomes_project 3 144325086 144328144 + Mcoln2 protein_coding retained_intron MGP_AJ_T0101167.1 MGP_AJ_G0039133.1 mouse_genomes_project 3 130789088 130789199 - Gm22322 snoRNA snoRNA MGP_AJ_T0007663.1 MGP_AJ_G0006265.1 mouse_genomes_project 3 105121027 105128633 + A930002I21Rik lincRNA lincRNA MGP_AJ_T0007664.1 MGP_AJ_G0006265.1 mouse_genomes_project 3 105121029 105127452 + A930002I21Rik lincRNA lincRNA MGP_AJ_T0098984.1 MGP_AJ_G0036961.1 mouse_genomes_project 3 101708703 101710126 - Gm43149 sense_intronic sense_intronic MGP_AJ_T0010502.1 MGP_AJ_G0008624.1 mouse_genomes_project 3 26770108 26770216 + Mir21b miRNA miRNA MGP_AJ_T0061014.1 MGP_AJ_G0027213.1 mouse_genomes_project 3 57250954 57256622 + MGP_AJ_P0061014 Sucnr1 protein_coding protein_coding MGP_AJ_T0061015.1 MGP_AJ_G0027213.1 mouse_genomes_project 3 57250987 57255381 + Sucnr1 protein_coding processed_transcript MGP_AJ_T0099860.1 MGP_AJ_G0037826.1 mouse_genomes_project 3 94201942 94202107 + Gm24136 snRNA snRNA MGP_AJ_T0061592.1 MGP_AJ_G0027352.1 mouse_genomes_project 3 85452837 85477500 + MGP_AJ_P0061592 Cct3 protein_coding protein_coding MGP_AJ_T0061593.1 MGP_AJ_G0027352.1 mouse_genomes_project 3 85452838 85454669 + Cct3 protein_coding retained_intron MGP_AJ_T0061594.1 MGP_AJ_G0027352.1 mouse_genomes_project 3 85452844 85477240 + Cct3 protein_coding retained_intron MGP_AJ_T0061595.1 MGP_AJ_G0027352.1 mouse_genomes_project 3 85452847 85470139 + Cct3 protein_coding retained_intron MGP_AJ_T0061596.1 MGP_AJ_G0027352.1 mouse_genomes_project 3 85452874 85477240 + Cct3 protein_coding retained_intron MGP_AJ_T0061597.1 MGP_AJ_G0027352.1 mouse_genomes_project 3 85452895 85477499 + MGP_AJ_P0061597 Cct3 protein_coding protein_coding MGP_AJ_T0061598.1 MGP_AJ_G0027352.1 mouse_genomes_project 3 85452909 85477240 + MGP_AJ_P0061598 Cct3 protein_coding protein_coding MGP_AJ_T0061599.1 MGP_AJ_G0027352.1 mouse_genomes_project 3 85458559 85476383 + MGP_AJ_P0061599 Cct3 protein_coding protein_coding MGP_AJ_T0061600.1 MGP_AJ_G0027352.1 mouse_genomes_project 3 85476727 85477497 + Cct3 protein_coding retained_intron MGP_AJ_T0061601.1 MGP_AJ_G0027352.1 mouse_genomes_project 3 85476780 85477498 + MGP_AJ_P0061601 Cct3 protein_coding protein_coding MGP_AJ_T0062141.1 MGP_AJ_G0027445.1 mouse_genomes_project 3 88025752 88041504 + MGP_AJ_P0062141 Pglyrp4 protein_coding protein_coding MGP_AJ_T0062142.1 MGP_AJ_G0027445.1 mouse_genomes_project 3 88025757 88040501 + MGP_AJ_P0062142 Pglyrp4 protein_coding protein_coding MGP_AJ_T0062143.1 MGP_AJ_G0027445.1 mouse_genomes_project 3 88038009 88041502 + Pglyrp4 protein_coding processed_transcript MGP_AJ_T0013959.1 MGP_AJ_G0012054.1 mouse_genomes_project 3 18258146 18258654 - processed_pseudogene processed_pseudogene MGP_AJ_T0098987.1 MGP_AJ_G0036964.1 mouse_genomes_project 3 101813925 101816016 + Gm43065 sense_intronic sense_intronic MGP_AJ_T0102567.1 MGP_AJ_G0040309.1 mouse_genomes_project 3 104589702 104590121 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0062773.1 MGP_AJ_G0027626.1 mouse_genomes_project 3 98358883 98396941 - Fam46c protein_coding processed_transcript MGP_AJ_T0062774.1 MGP_AJ_G0027626.1 mouse_genomes_project 3 98358886 98396937 - Fam46c protein_coding processed_transcript MGP_AJ_T0062775.1 MGP_AJ_G0027626.1 mouse_genomes_project 3 98375325 98397067 - MGP_AJ_P0062775 Fam46c protein_coding protein_coding MGP_AJ_T0010520.1 MGP_AJ_G0008642.1 mouse_genomes_project 3 82590307 82590427 + Mir466k miRNA miRNA MGP_AJ_T0013991.1 MGP_AJ_G0012086.1 mouse_genomes_project 3 33566503 33567050 + processed_pseudogene processed_pseudogene MGP_AJ_T0014143.1 MGP_AJ_G0012238.1 mouse_genomes_project 3 78502520 78502800 - processed_pseudogene processed_pseudogene MGP_AJ_T0062181.1 MGP_AJ_G0027478.1 mouse_genomes_project 3 90230876 90232668 - MGP_AJ_P0062181 Lce1e protein_coding protein_coding MGP_AJ_T0001214.1 MGP_AJ_G0001138.1 mouse_genomes_project 3 50761399 50763001 + TEC TEC MGP_AJ_T0001174.1 MGP_AJ_G0001100.1 mouse_genomes_project 3 44321378 44324101 - TEC TEC MGP_AJ_T0061011.1 MGP_AJ_G0027212.1 mouse_genomes_project 3 57188598 57203754 + Aadac protein_coding processed_transcript MGP_AJ_T0061012.1 MGP_AJ_G0027212.1 mouse_genomes_project 3 57194564 57205410 + MGP_AJ_P0061012 Aadac protein_coding protein_coding MGP_AJ_T0061013.1 MGP_AJ_G0027212.1 mouse_genomes_project 3 57194679 57198835 + Aadac protein_coding retained_intron MGP_AJ_T0001112.1 MGP_AJ_G0001038.1 mouse_genomes_project 3 7368240 7368737 + TEC TEC MGP_AJ_T0102014.1 MGP_AJ_G0039824.1 mouse_genomes_project 3 136384473 136393252 + transcribed_unprocessed_pseudogene processed_transcript MGP_AJ_T0102015.1 MGP_AJ_G0039824.1 mouse_genomes_project 3 136386534 136400358 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_AJ_T0102016.1 MGP_AJ_G0039824.1 mouse_genomes_project 3 136394952 136401430 + transcribed_unprocessed_pseudogene processed_transcript MGP_AJ_T0062267.1 MGP_AJ_G0027514.1 mouse_genomes_project 3 92295432 92341698 - MGP_AJ_P0062267 Tuft1 protein_coding protein_coding MGP_AJ_T0062268.1 MGP_AJ_G0027514.1 mouse_genomes_project 3 92295434 92341699 - MGP_AJ_P0062268 Tuft1 protein_coding protein_coding MGP_AJ_T0062269.1 MGP_AJ_G0027514.1 mouse_genomes_project 3 92295671 92341627 - MGP_AJ_P0062269 Tuft1 protein_coding protein_coding MGP_AJ_T0062270.1 MGP_AJ_G0027514.1 mouse_genomes_project 3 92296843 92298015 - Tuft1 protein_coding retained_intron MGP_AJ_T0063353.1 MGP_AJ_G0027758.1 mouse_genomes_project 3 111662187 111687001 - MGP_AJ_P0063353 Rnpc3 protein_coding protein_coding MGP_AJ_T0063354.1 MGP_AJ_G0027758.1 mouse_genomes_project 3 111662577 111686885 - MGP_AJ_P0063354 Rnpc3 protein_coding protein_coding MGP_AJ_T0063355.1 MGP_AJ_G0027758.1 mouse_genomes_project 3 111662584 111687001 - MGP_AJ_P0063355 Rnpc3 protein_coding protein_coding MGP_AJ_T0063356.1 MGP_AJ_G0027758.1 mouse_genomes_project 3 111663456 111687001 - MGP_AJ_P0063356 Rnpc3 protein_coding protein_coding MGP_AJ_T0063357.1 MGP_AJ_G0027758.1 mouse_genomes_project 3 111668253 111672292 - Rnpc3 protein_coding processed_transcript MGP_AJ_T0063358.1 MGP_AJ_G0027758.1 mouse_genomes_project 3 111673404 111678817 - Rnpc3 protein_coding processed_transcript MGP_AJ_T0063359.1 MGP_AJ_G0027758.1 mouse_genomes_project 3 111673653 111678168 - Rnpc3 protein_coding processed_transcript MGP_AJ_T0063360.1 MGP_AJ_G0027758.1 mouse_genomes_project 3 111683929 111686931 - Rnpc3 protein_coding retained_intron MGP_AJ_T0007719.1 MGP_AJ_G0006310.1 mouse_genomes_project 3 132167790 132198841 + Gm43192 lincRNA lincRNA MGP_AJ_T0014285.1 MGP_AJ_G0012380.1 mouse_genomes_project 3 119449573 119449994 - processed_pseudogene processed_pseudogene MGP_AJ_T0010514.1 MGP_AJ_G0008636.1 mouse_genomes_project 3 62904308 62904447 + Mir8120 miRNA miRNA MGP_AJ_T0064091.1 MGP_AJ_G0027896.1 mouse_genomes_project 3 139865949 139910016 - MGP_AJ_P0064091 Bmpr1b protein_coding protein_coding MGP_AJ_T0064092.1 MGP_AJ_G0027896.1 mouse_genomes_project 3 139869127 139962309 - MGP_AJ_P0064092 Bmpr1b protein_coding nonsense_mediated_decay MGP_AJ_T0004400.1 MGP_AJ_G0003835.1 mouse_genomes_project 3 143526277 143528299 - 9530034A14Rik antisense antisense MGP_AJ_T0010519.1 MGP_AJ_G0008641.1 mouse_genomes_project 3 79195378 79195441 - Mir7010 miRNA miRNA MGP_AJ_T0007454.1 MGP_AJ_G0006109.1 mouse_genomes_project 3 6160969 6169860 + 4930539M17Rik lincRNA lincRNA MGP_AJ_T0014124.1 MGP_AJ_G0012219.1 mouse_genomes_project 3 71512291 71512757 - processed_pseudogene processed_pseudogene MGP_AJ_T0010558.1 MGP_AJ_G0008680.1 mouse_genomes_project 3 135828991 135829072 - Mir6380 miRNA miRNA MGP_AJ_T0062726.1 MGP_AJ_G0027612.1 mouse_genomes_project 3 96095664 96122092 + MGP_AJ_P0062726 Hmgcs2 protein_coding protein_coding MGP_AJ_T0062727.1 MGP_AJ_G0027612.1 mouse_genomes_project 3 96095664 96122098 + MGP_AJ_P0062727 Hmgcs2 protein_coding protein_coding MGP_AJ_T0014207.1 MGP_AJ_G0012302.1 mouse_genomes_project 3 97049925 97050454 - processed_pseudogene processed_pseudogene MGP_AJ_T0064093.1 MGP_AJ_G0027897.1 mouse_genomes_project 3 140268036 140424707 - MGP_AJ_P0064093 Pdlim5 protein_coding protein_coding MGP_AJ_T0064094.1 MGP_AJ_G0027897.1 mouse_genomes_project 3 140271120 140420822 - MGP_AJ_P0064094 Pdlim5 protein_coding protein_coding MGP_AJ_T0064095.1 MGP_AJ_G0027897.1 mouse_genomes_project 3 140271120 140420822 - MGP_AJ_P0064095 Pdlim5 protein_coding protein_coding MGP_AJ_T0064096.1 MGP_AJ_G0027897.1 mouse_genomes_project 3 140271120 140420822 - MGP_AJ_P0064096 Pdlim5 protein_coding protein_coding MGP_AJ_T0064097.1 MGP_AJ_G0027897.1 mouse_genomes_project 3 140271120 140424592 - MGP_AJ_P0064097 Pdlim5 protein_coding protein_coding MGP_AJ_T0064098.1 MGP_AJ_G0027897.1 mouse_genomes_project 3 140272945 140275033 - Pdlim5 protein_coding retained_intron MGP_AJ_T0064099.1 MGP_AJ_G0027897.1 mouse_genomes_project 3 140277851 140332951 - MGP_AJ_P0064099 Pdlim5 protein_coding protein_coding MGP_AJ_T0064100.1 MGP_AJ_G0027897.1 mouse_genomes_project 3 140277910 140333414 - MGP_AJ_P0064100 Pdlim5 protein_coding protein_coding MGP_AJ_T0064101.1 MGP_AJ_G0027897.1 mouse_genomes_project 3 140331070 140420864 - MGP_AJ_P0064101 Pdlim5 protein_coding protein_coding MGP_AJ_T0064102.1 MGP_AJ_G0027897.1 mouse_genomes_project 3 140331305 140424621 - MGP_AJ_P0064102 Pdlim5 protein_coding protein_coding MGP_AJ_T0064103.1 MGP_AJ_G0027897.1 mouse_genomes_project 3 140331310 140420864 - MGP_AJ_P0064103 Pdlim5 protein_coding protein_coding MGP_AJ_T0064104.1 MGP_AJ_G0027897.1 mouse_genomes_project 3 140332192 140424632 - MGP_AJ_P0064104 Pdlim5 protein_coding protein_coding MGP_AJ_T0064105.1 MGP_AJ_G0027897.1 mouse_genomes_project 3 140332299 140424710 - MGP_AJ_P0064105 Pdlim5 protein_coding protein_coding MGP_AJ_T0060510.1 MGP_AJ_G0027113.1 mouse_genomes_project 3 33087343 33129063 - MGP_AJ_P0060510 Mccc1 protein_coding nonsense_mediated_decay MGP_AJ_T0060511.1 MGP_AJ_G0027113.1 mouse_genomes_project 3 33087867 33129132 - MGP_AJ_P0060511 Mccc1 protein_coding protein_coding MGP_AJ_T0060512.1 MGP_AJ_G0027113.1 mouse_genomes_project 3 33087873 33089144 - Mccc1 protein_coding retained_intron MGP_AJ_T0060513.1 MGP_AJ_G0027113.1 mouse_genomes_project 3 33089761 33097146 - Mccc1 protein_coding retained_intron MGP_AJ_T0060514.1 MGP_AJ_G0027113.1 mouse_genomes_project 3 33101420 33124345 - Mccc1 protein_coding retained_intron MGP_AJ_T0060515.1 MGP_AJ_G0027113.1 mouse_genomes_project 3 33103233 33104607 - Mccc1 protein_coding retained_intron MGP_AJ_T0060516.1 MGP_AJ_G0027113.1 mouse_genomes_project 3 33103816 33117834 - MGP_AJ_P0060516 Mccc1 protein_coding nonsense_mediated_decay MGP_AJ_T0060517.1 MGP_AJ_G0027113.1 mouse_genomes_project 3 33112990 33129095 - MGP_AJ_P0060517 Mccc1 protein_coding nonsense_mediated_decay MGP_AJ_T0014224.1 MGP_AJ_G0012319.1 mouse_genomes_project 3 100766046 100766454 + processed_pseudogene processed_pseudogene MGP_AJ_T0098983.1 MGP_AJ_G0036960.1 mouse_genomes_project 3 101547902 101549162 + Gm43066 sense_intronic sense_intronic MGP_AJ_T0064121.1 MGP_AJ_G0027903.1 mouse_genomes_project 3 140744522 140788001 + MGP_AJ_P0064121 Kyat3 protein_coding protein_coding MGP_AJ_T0064122.1 MGP_AJ_G0027903.1 mouse_genomes_project 3 140744551 140790344 + MGP_AJ_P0064122 Kyat3 protein_coding protein_coding MGP_AJ_T0064123.1 MGP_AJ_G0027903.1 mouse_genomes_project 3 140744557 140769676 + MGP_AJ_P0064123 Kyat3 protein_coding protein_coding MGP_AJ_T0064124.1 MGP_AJ_G0027903.1 mouse_genomes_project 3 140744565 140787812 + MGP_AJ_P0064124 Kyat3 protein_coding nonsense_mediated_decay MGP_AJ_T0064125.1 MGP_AJ_G0027903.1 mouse_genomes_project 3 140766593 140774772 + Kyat3 protein_coding processed_transcript MGP_AJ_T0064126.1 MGP_AJ_G0027903.1 mouse_genomes_project 3 140771874 140773835 + Kyat3 protein_coding retained_intron MGP_AJ_T0064127.1 MGP_AJ_G0027903.1 mouse_genomes_project 3 140781101 140784437 + Kyat3 protein_coding retained_intron MGP_AJ_T0064128.1 MGP_AJ_G0027903.1 mouse_genomes_project 3 140782000 140787810 + Kyat3 protein_coding processed_transcript MGP_AJ_T0099885.1 MGP_AJ_G0037851.1 mouse_genomes_project 3 144514538 144514641 - Gm22078 snRNA snRNA MGP_AJ_T0062176.1 MGP_AJ_G0027473.1 mouse_genomes_project 3 90172613 90174231 - MGP_AJ_P0062176 Lce1a1 protein_coding protein_coding MGP_AJ_T0004274.1 MGP_AJ_G0003752.1 mouse_genomes_project 3 85795191 85799792 - Gm20652 antisense antisense MGP_AJ_T0007627.1 MGP_AJ_G0006234.1 mouse_genomes_project 3 92459741 92460894 + lincRNA lincRNA MGP_AJ_T0063814.1 MGP_AJ_G0027841.1 mouse_genomes_project 3 128793711 128797218 - MGP_AJ_P0063814 Rpl34 protein_coding protein_coding MGP_AJ_T0063815.1 MGP_AJ_G0027841.1 mouse_genomes_project 3 128793714 128794287 - Rpl34 protein_coding retained_intron MGP_AJ_T0063816.1 MGP_AJ_G0027841.1 mouse_genomes_project 3 128793719 128797279 - MGP_AJ_P0063816 Rpl34 protein_coding protein_coding MGP_AJ_T0063817.1 MGP_AJ_G0027841.1 mouse_genomes_project 3 128793744 128797223 - Rpl34 protein_coding retained_intron MGP_AJ_T0063818.1 MGP_AJ_G0027841.1 mouse_genomes_project 3 128793756 128797202 - MGP_AJ_P0063818 Rpl34 protein_coding protein_coding MGP_AJ_T0063819.1 MGP_AJ_G0027841.1 mouse_genomes_project 3 128795212 128797215 - MGP_AJ_P0063819 Rpl34 protein_coding protein_coding MGP_AJ_T0063820.1 MGP_AJ_G0027841.1 mouse_genomes_project 3 128795447 128797228 - Rpl34 protein_coding retained_intron MGP_AJ_T0063821.1 MGP_AJ_G0027841.1 mouse_genomes_project 3 128795718 128797227 - MGP_AJ_P0063821 Rpl34 protein_coding protein_coding MGP_AJ_T0014032.1 MGP_AJ_G0012127.1 mouse_genomes_project 3 46242471 46242827 - processed_pseudogene processed_pseudogene MGP_AJ_T0060768.1 MGP_AJ_G0027156.1 mouse_genomes_project 3 48416711 48421232 - MGP_AJ_P0060768 Ndufc1 protein_coding protein_coding MGP_AJ_T0060769.1 MGP_AJ_G0027156.1 mouse_genomes_project 3 48417662 48419725 - Ndufc1 protein_coding retained_intron MGP_AJ_T0060770.1 MGP_AJ_G0027156.1 mouse_genomes_project 3 48417685 48420910 - Ndufc1 protein_coding processed_transcript MGP_AJ_T0060771.1 MGP_AJ_G0027156.1 mouse_genomes_project 3 48417789 48421208 - MGP_AJ_P0060771 Ndufc1 protein_coding protein_coding MGP_AJ_T0007554.1 MGP_AJ_G0006183.1 mouse_genomes_project 3 50959575 50978927 + Gm31026 lincRNA lincRNA MGP_AJ_T0004382.1 MGP_AJ_G0003823.1 mouse_genomes_project 3 133460014 133462471 - 4930539J05Rik antisense antisense MGP_AJ_T0004383.1 MGP_AJ_G0003823.1 mouse_genomes_project 3 133460031 133461565 - 4930539J05Rik antisense antisense MGP_AJ_T0101108.1 MGP_AJ_G0039074.1 mouse_genomes_project 3 19570248 19570377 - Gm26354 snoRNA snoRNA MGP_AJ_T0001307.1 MGP_AJ_G0001231.1 mouse_genomes_project 3 119845644 119848356 - TEC TEC MGP_AJ_T0014062.1 MGP_AJ_G0012157.1 mouse_genomes_project 3 55373151 55373523 - processed_pseudogene processed_pseudogene MGP_AJ_T0062086.1 MGP_AJ_G0027429.1 mouse_genomes_project 3 87767269 87779100 + Ilf2 protein_coding retained_intron MGP_AJ_T0062087.1 MGP_AJ_G0027429.1 mouse_genomes_project 3 87767283 87770450 + Ilf2 protein_coding retained_intron MGP_AJ_T0062088.1 MGP_AJ_G0027429.1 mouse_genomes_project 3 87767290 87773501 + Ilf2 protein_coding retained_intron MGP_AJ_T0062089.1 MGP_AJ_G0027429.1 mouse_genomes_project 3 87767290 87779516 + MGP_AJ_P0062089 Ilf2 protein_coding protein_coding MGP_AJ_T0062090.1 MGP_AJ_G0027429.1 mouse_genomes_project 3 87767300 87776599 + Ilf2 protein_coding retained_intron MGP_AJ_T0062091.1 MGP_AJ_G0027429.1 mouse_genomes_project 3 87771822 87777525 + Ilf2 protein_coding retained_intron MGP_AJ_T0061466.1 MGP_AJ_G0027323.1 mouse_genomes_project 3 84189718 84292035 - MGP_AJ_P0061466 Kirrel protein_coding protein_coding MGP_AJ_T0061467.1 MGP_AJ_G0027323.1 mouse_genomes_project 3 84189726 84292082 - MGP_AJ_P0061467 Kirrel protein_coding protein_coding MGP_AJ_T0061468.1 MGP_AJ_G0027323.1 mouse_genomes_project 3 84195753 84291885 - MGP_AJ_P0061468 Kirrel protein_coding protein_coding MGP_AJ_T0004329.1 MGP_AJ_G0003790.1 mouse_genomes_project 3 103390779 103401450 - Kcnd3os antisense antisense MGP_AJ_T0004330.1 MGP_AJ_G0003790.1 mouse_genomes_project 3 103397863 103402550 - Kcnd3os antisense antisense MGP_AJ_T0013915.1 MGP_AJ_G0012010.1 mouse_genomes_project 3 7012524 7015473 + processed_pseudogene processed_pseudogene MGP_AJ_T0001368.1 MGP_AJ_G0001291.1 mouse_genomes_project 3 137024564 137026336 - TEC TEC MGP_AJ_T0098954.1 MGP_AJ_G0036932.1 mouse_genomes_project 3 16812130 16812717 + BC002189 sense_intronic sense_intronic MGP_AJ_T0064019.1 MGP_AJ_G0027881.1 mouse_genomes_project 3 136139605 136179704 - MGP_AJ_P0064019 Mttp protein_coding protein_coding MGP_AJ_T0064020.1 MGP_AJ_G0027881.1 mouse_genomes_project 3 136139620 136191980 - MGP_AJ_P0064020 Mttp protein_coding unknown_likely_coding MGP_AJ_T0064021.1 MGP_AJ_G0027881.1 mouse_genomes_project 3 136140805 136191935 - MGP_AJ_P0064021 Mttp protein_coding protein_coding MGP_AJ_T0064022.1 MGP_AJ_G0027881.1 mouse_genomes_project 3 136190809 136193512 - Mttp protein_coding retained_intron MGP_AJ_T0010543.1 MGP_AJ_G0008665.1 mouse_genomes_project 3 115368213 115368278 + Gm22408 miRNA miRNA MGP_AJ_T0061048.1 MGP_AJ_G0027219.1 mouse_genomes_project 3 59661609 59702460 - MGP_AJ_P0061048 Dhx36 protein_coding protein_coding MGP_AJ_T0061049.1 MGP_AJ_G0027219.1 mouse_genomes_project 3 59664241 59666184 - Dhx36 protein_coding retained_intron MGP_AJ_T0061050.1 MGP_AJ_G0027219.1 mouse_genomes_project 3 59677788 59682216 - Dhx36 protein_coding retained_intron MGP_AJ_T0061051.1 MGP_AJ_G0027219.1 mouse_genomes_project 3 59691524 59695725 - Dhx36 protein_coding retained_intron MGP_AJ_T0014018.1 MGP_AJ_G0012113.1 mouse_genomes_project 3 40848323 40848852 - processed_pseudogene processed_pseudogene MGP_AJ_T0061566.1 MGP_AJ_G0027344.1 mouse_genomes_project 3 85187553 85200711 + MGP_AJ_P0061566 Gpatch4 protein_coding protein_coding MGP_AJ_T0061567.1 MGP_AJ_G0027344.1 mouse_genomes_project 3 85187553 85200708 + MGP_AJ_P0061567 Gpatch4 protein_coding protein_coding MGP_AJ_T0061568.1 MGP_AJ_G0027344.1 mouse_genomes_project 3 85187554 85199378 + Gpatch4 protein_coding retained_intron MGP_AJ_T0061569.1 MGP_AJ_G0027344.1 mouse_genomes_project 3 85187569 85199918 + MGP_AJ_P0061569 Gpatch4 protein_coding protein_coding MGP_AJ_T0061570.1 MGP_AJ_G0027344.1 mouse_genomes_project 3 85187573 85200694 + MGP_AJ_P0061570 Gpatch4 protein_coding protein_coding MGP_AJ_T0014376.1 MGP_AJ_G0012471.1 mouse_genomes_project 3 150981146 150982747 - processed_pseudogene processed_pseudogene MGP_AJ_T0014093.1 MGP_AJ_G0012188.1 mouse_genomes_project 3 63440969 63441122 - processed_pseudogene processed_pseudogene MGP_AJ_T0004368.1 MGP_AJ_G0003812.1 mouse_genomes_project 3 125192981 125199815 + Gm16958 antisense antisense MGP_AJ_T0004369.1 MGP_AJ_G0003812.1 mouse_genomes_project 3 125193015 125198844 + Gm16958 antisense antisense MGP_AJ_T0007578.1 MGP_AJ_G0006201.1 mouse_genomes_project 3 70531409 70661418 - lincRNA lincRNA MGP_AJ_T0062186.1 MGP_AJ_G0027483.1 mouse_genomes_project 3 90302969 90304641 - MGP_AJ_P0062186 Lce1i protein_coding protein_coding MGP_AJ_T0061373.1 MGP_AJ_G0027301.1 mouse_genomes_project 3 80947539 80953035 - MGP_AJ_P0061373 Tlr2 protein_coding protein_coding MGP_AJ_T0061677.1 MGP_AJ_G0027366.1 mouse_genomes_project 3 85729237 85745843 + MGP_AJ_P0061677 Ubqln4 protein_coding protein_coding MGP_AJ_T0061678.1 MGP_AJ_G0027366.1 mouse_genomes_project 3 85729246 85739665 + Ubqln4 protein_coding retained_intron MGP_AJ_T0061679.1 MGP_AJ_G0027366.1 mouse_genomes_project 3 85729278 85732844 + MGP_AJ_P0061679 Ubqln4 protein_coding nonsense_mediated_decay MGP_AJ_T0061680.1 MGP_AJ_G0027366.1 mouse_genomes_project 3 85732708 85740620 + Ubqln4 protein_coding processed_transcript MGP_AJ_T0061681.1 MGP_AJ_G0027366.1 mouse_genomes_project 3 85740012 85741380 + Ubqln4 protein_coding retained_intron MGP_AJ_T0014015.1 MGP_AJ_G0012110.1 mouse_genomes_project 3 39656576 39657063 - processed_pseudogene processed_pseudogene MGP_AJ_T0013964.1 MGP_AJ_G0012059.1 mouse_genomes_project 3 20496849 20497225 - processed_pseudogene processed_pseudogene MGP_AJ_T0007674.1 MGP_AJ_G0006274.1 mouse_genomes_project 3 114163388 114179740 + Gm26544 lincRNA lincRNA MGP_AJ_T0014374.1 MGP_AJ_G0012469.1 mouse_genomes_project 3 150259732 150260288 - processed_pseudogene processed_pseudogene MGP_AJ_T0001389.1 MGP_AJ_G0001312.1 mouse_genomes_project 3 153146944 153150929 + TEC TEC MGP_AJ_T0014295.1 MGP_AJ_G0012390.1 mouse_genomes_project 3 121607340 121608086 - processed_pseudogene processed_pseudogene MGP_AJ_T0007553.1 MGP_AJ_G0006182.1 mouse_genomes_project 3 50785588 50807148 + C820005J03Rik lincRNA lincRNA MGP_AJ_T0014268.1 MGP_AJ_G0012363.1 mouse_genomes_project 3 112851344 112852012 - processed_pseudogene processed_pseudogene MGP_AJ_T0064551.1 MGP_AJ_G0027974.1 mouse_genomes_project 3 156284662 156316639 + MGP_AJ_P0064551 Lrrc40 protein_coding protein_coding MGP_AJ_T0064552.1 MGP_AJ_G0027974.1 mouse_genomes_project 3 156284700 156315241 + MGP_AJ_P0064552 Lrrc40 protein_coding nonsense_mediated_decay MGP_AJ_T0064553.1 MGP_AJ_G0027974.1 mouse_genomes_project 3 156284702 156315241 + MGP_AJ_P0064553 Lrrc40 protein_coding nonsense_mediated_decay MGP_AJ_T0064554.1 MGP_AJ_G0027974.1 mouse_genomes_project 3 156284722 156299960 + MGP_AJ_P0064554 Lrrc40 protein_coding nonsense_mediated_decay MGP_AJ_T0064555.1 MGP_AJ_G0027974.1 mouse_genomes_project 3 156284750 156299949 + MGP_AJ_P0064555 Lrrc40 protein_coding nonsense_mediated_decay MGP_AJ_T0064556.1 MGP_AJ_G0027974.1 mouse_genomes_project 3 156284860 156299895 + MGP_AJ_P0064556 Lrrc40 protein_coding nonsense_mediated_decay MGP_AJ_T0064557.1 MGP_AJ_G0027974.1 mouse_genomes_project 3 156310400 156314698 + Lrrc40 protein_coding retained_intron MGP_AJ_T0064558.1 MGP_AJ_G0027974.1 mouse_genomes_project 3 156310801 156312179 + Lrrc40 protein_coding retained_intron MGP_AJ_T0060299.1 MGP_AJ_G0027078.1 mouse_genomes_project 3 25927504 25929484 + MGP_AJ_P0060299 Rpl22l1 protein_coding protein_coding MGP_AJ_T0060300.1 MGP_AJ_G0027078.1 mouse_genomes_project 3 25927537 25929493 + MGP_AJ_P0060300 Rpl22l1 protein_coding protein_coding MGP_AJ_T0060301.1 MGP_AJ_G0027078.1 mouse_genomes_project 3 25927576 25929484 + Rpl22l1 protein_coding retained_intron MGP_AJ_T0060302.1 MGP_AJ_G0027078.1 mouse_genomes_project 3 25927578 25929491 + MGP_AJ_P0060302 Rpl22l1 protein_coding nonsense_mediated_decay MGP_AJ_T0060303.1 MGP_AJ_G0027078.1 mouse_genomes_project 3 25927633 25928769 + Rpl22l1 protein_coding processed_transcript MGP_AJ_T0060304.1 MGP_AJ_G0027078.1 mouse_genomes_project 3 25927665 25929363 + Rpl22l1 protein_coding processed_transcript MGP_AJ_T0060305.1 MGP_AJ_G0027078.1 mouse_genomes_project 3 25927731 25929484 + Rpl22l1 protein_coding processed_transcript MGP_AJ_T0060306.1 MGP_AJ_G0027078.1 mouse_genomes_project 3 25928526 25929484 + Rpl22l1 protein_coding retained_intron MGP_AJ_T0060307.1 MGP_AJ_G0027078.1 mouse_genomes_project 3 25928567 25929485 + Rpl22l1 protein_coding retained_intron MGP_AJ_T0063471.1 MGP_AJ_G0027783.1 mouse_genomes_project 3 116634378 117527042 + MGP_AJ_P0063471 Dpyd protein_coding protein_coding MGP_AJ_T0063472.1 MGP_AJ_G0027783.1 mouse_genomes_project 3 116634379 116877703 + Dpyd protein_coding retained_intron MGP_AJ_T0063473.1 MGP_AJ_G0027783.1 mouse_genomes_project 3 116634426 116860796 + Dpyd protein_coding retained_intron MGP_AJ_T0063474.1 MGP_AJ_G0027783.1 mouse_genomes_project 3 116634429 116750797 + MGP_AJ_P0063474 Dpyd protein_coding protein_coding MGP_AJ_T0063475.1 MGP_AJ_G0027783.1 mouse_genomes_project 3 116634435 116635402 + Dpyd protein_coding retained_intron MGP_AJ_T0063476.1 MGP_AJ_G0027783.1 mouse_genomes_project 3 116889883 116978974 + Dpyd protein_coding retained_intron MGP_AJ_T0001296.1 MGP_AJ_G0001220.1 mouse_genomes_project 3 116598059 116600179 + TEC TEC MGP_AJ_T0062956.1 MGP_AJ_G0027664.1 mouse_genomes_project 3 101916444 101956637 + MGP_AJ_P0062956 Phtf1 protein_coding protein_coding MGP_AJ_T0062957.1 MGP_AJ_G0027664.1 mouse_genomes_project 3 101916592 101956637 + MGP_AJ_P0062957 Phtf1 protein_coding protein_coding MGP_AJ_T0062958.1 MGP_AJ_G0027664.1 mouse_genomes_project 3 101916700 101973744 + MGP_AJ_P0062958 Phtf1 protein_coding nonsense_mediated_decay MGP_AJ_T0062959.1 MGP_AJ_G0027664.1 mouse_genomes_project 3 101916702 101956639 + MGP_AJ_P0062959 Phtf1 protein_coding protein_coding MGP_AJ_T0062960.1 MGP_AJ_G0027664.1 mouse_genomes_project 3 101916706 101956637 + Phtf1 protein_coding retained_intron MGP_AJ_T0062961.1 MGP_AJ_G0027664.1 mouse_genomes_project 3 101916708 101940440 + MGP_AJ_P0062961 Phtf1 protein_coding protein_coding MGP_AJ_T0062962.1 MGP_AJ_G0027664.1 mouse_genomes_project 3 101916780 101956639 + MGP_AJ_P0062962 Phtf1 protein_coding protein_coding MGP_AJ_T0062963.1 MGP_AJ_G0027664.1 mouse_genomes_project 3 101916922 101936876 + MGP_AJ_P0062963 Phtf1 protein_coding protein_coding MGP_AJ_T0062964.1 MGP_AJ_G0027664.1 mouse_genomes_project 3 101917259 101946670 + MGP_AJ_P0062964 Phtf1 protein_coding nonsense_mediated_decay MGP_AJ_T0062965.1 MGP_AJ_G0027664.1 mouse_genomes_project 3 101945568 101946714 + Phtf1 protein_coding retained_intron MGP_AJ_T0007729.1 MGP_AJ_G0006319.1 mouse_genomes_project 3 135840761 135848863 - Gm31678 lincRNA lincRNA MGP_AJ_T0001375.1 MGP_AJ_G0001298.1 mouse_genomes_project 3 149251653 149256073 - TEC TEC MGP_AJ_T0102568.1 MGP_AJ_G0040310.1 mouse_genomes_project 3 105961395 105965863 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0062192.1 MGP_AJ_G0027488.1 mouse_genomes_project 3 90394972 90396830 - MGP_AJ_P0062192 2310050C09Rik protein_coding protein_coding MGP_AJ_T0007512.1 MGP_AJ_G0006153.1 mouse_genomes_project 3 34335028 34340738 + Gm12532 lincRNA lincRNA MGP_AJ_T0001251.1 MGP_AJ_G0001175.1 mouse_genomes_project 3 76725556 76726845 - TEC TEC MGP_AJ_T0014114.1 MGP_AJ_G0012209.1 mouse_genomes_project 3 68613060 68613516 - processed_pseudogene processed_pseudogene MGP_AJ_T0001384.1 MGP_AJ_G0001307.1 mouse_genomes_project 3 151165306 151166291 + TEC TEC MGP_AJ_T0014034.1 MGP_AJ_G0012129.1 mouse_genomes_project 3 46673995 46674530 - processed_pseudogene processed_pseudogene MGP_AJ_T0001391.1 MGP_AJ_G0001314.1 mouse_genomes_project 3 154900017 154902585 + TEC TEC MGP_AJ_T0001291.1 MGP_AJ_G0001215.1 mouse_genomes_project 3 109793235 109796437 + TEC TEC MGP_AJ_T0061042.1 MGP_AJ_G0027218.1 mouse_genomes_project 3 59536685 59655818 + MGP_AJ_P0061042 Arhgef26 protein_coding protein_coding MGP_AJ_T0061043.1 MGP_AJ_G0027218.1 mouse_genomes_project 3 59537340 59573232 + Arhgef26 protein_coding processed_transcript MGP_AJ_T0061044.1 MGP_AJ_G0027218.1 mouse_genomes_project 3 59538731 59571630 + Arhgef26 protein_coding retained_intron MGP_AJ_T0061045.1 MGP_AJ_G0027218.1 mouse_genomes_project 3 59539442 59574504 + Arhgef26 protein_coding processed_transcript MGP_AJ_T0061046.1 MGP_AJ_G0027218.1 mouse_genomes_project 3 59613267 59653809 + MGP_AJ_P0061046 Arhgef26 protein_coding protein_coding MGP_AJ_T0061047.1 MGP_AJ_G0027218.1 mouse_genomes_project 3 59620779 59623611 + Arhgef26 protein_coding retained_intron MGP_AJ_T0060897.1 MGP_AJ_G0027182.1 mouse_genomes_project 3 52243561 52269610 + MGP_AJ_P0060897 Sohlh2 protein_coding protein_coding MGP_AJ_T0063174.1 MGP_AJ_G0027719.1 mouse_genomes_project 3 105994305 105999099 - MGP_AJ_P0063174 Gstm6 protein_coding protein_coding MGP_AJ_T0063175.1 MGP_AJ_G0027719.1 mouse_genomes_project 3 105994313 105999200 - MGP_AJ_P0063175 Gstm6 protein_coding protein_coding MGP_AJ_T0063176.1 MGP_AJ_G0027719.1 mouse_genomes_project 3 105994571 105998849 - MGP_AJ_P0063176 Gstm6 protein_coding nonsense_mediated_decay MGP_AJ_T0063177.1 MGP_AJ_G0027719.1 mouse_genomes_project 3 105997283 105999181 - Gstm6 protein_coding processed_transcript MGP_AJ_T0060137.1 MGP_AJ_G0027043.1 mouse_genomes_project 3 11980166 11988567 + MGP_AJ_P0060137 Car2 protein_coding protein_coding MGP_AJ_T0060138.1 MGP_AJ_G0027043.1 mouse_genomes_project 3 11980321 11994197 + MGP_AJ_P0060138 Car2 protein_coding protein_coding MGP_AJ_T0060139.1 MGP_AJ_G0027043.1 mouse_genomes_project 3 11980532 11982460 + Car2 protein_coding retained_intron MGP_AJ_T0061956.1 MGP_AJ_G0027412.1 mouse_genomes_project 3 87120498 87174059 - MGP_AJ_P0061956 Il6ra protein_coding protein_coding MGP_AJ_T0061957.1 MGP_AJ_G0027412.1 mouse_genomes_project 3 87125687 87174025 - MGP_AJ_P0061957 Il6ra protein_coding protein_coding MGP_AJ_T0017975.1 MGP_AJ_G0015491.1 mouse_genomes_project 3 101746492 101751816 + Gm15471 processed_transcript retained_intron MGP_AJ_T0017976.1 MGP_AJ_G0015491.1 mouse_genomes_project 3 101746499 101751817 + Gm15471 processed_transcript antisense MGP_AJ_T0017995.1 MGP_AJ_G0015498.1 mouse_genomes_project 3 116500119 116503755 + Gm26871 processed_transcript lincRNA MGP_AJ_T0017996.1 MGP_AJ_G0015498.1 mouse_genomes_project 3 116503592 116586536 + Gm26871 processed_transcript lincRNA MGP_AJ_T0017997.1 MGP_AJ_G0015498.1 mouse_genomes_project 3 116503717 116588620 + Gm26871 processed_transcript lincRNA MGP_AJ_T0017998.1 MGP_AJ_G0015498.1 mouse_genomes_project 3 116503728 116543867 + Gm26871 processed_transcript lincRNA MGP_AJ_T0017999.1 MGP_AJ_G0015498.1 mouse_genomes_project 3 116503761 116601931 + Gm26871 processed_transcript lincRNA MGP_AJ_T0018000.1 MGP_AJ_G0015498.1 mouse_genomes_project 3 116528128 116531249 + Gm26871 processed_transcript retained_intron MGP_AJ_T0063702.1 MGP_AJ_G0027819.1 mouse_genomes_project 3 125578345 125595659 - MGP_AJ_P0063702 Larp7 protein_coding protein_coding MGP_AJ_T0063703.1 MGP_AJ_G0027819.1 mouse_genomes_project 3 125588320 125595507 - Larp7 protein_coding retained_intron MGP_AJ_T0063704.1 MGP_AJ_G0027819.1 mouse_genomes_project 3 125589684 125595657 - MGP_AJ_P0063704 Larp7 protein_coding protein_coding MGP_AJ_T0063332.1 MGP_AJ_G0027755.1 mouse_genomes_project 3 107849871 108201791 - MGP_AJ_P0063332 Ntng1 protein_coding protein_coding MGP_AJ_T0063333.1 MGP_AJ_G0027755.1 mouse_genomes_project 3 107849874 108202388 - MGP_AJ_P0063333 Ntng1 protein_coding unknown_likely_coding MGP_AJ_T0063334.1 MGP_AJ_G0027755.1 mouse_genomes_project 3 107849877 108202798 - MGP_AJ_P0063334 Ntng1 protein_coding protein_coding MGP_AJ_T0063335.1 MGP_AJ_G0027755.1 mouse_genomes_project 3 107850946 108202262 - MGP_AJ_P0063335 Ntng1 protein_coding nonsense_mediated_decay MGP_AJ_T0063336.1 MGP_AJ_G0027755.1 mouse_genomes_project 3 107852513 108194322 - MGP_AJ_P0063336 Ntng1 protein_coding protein_coding MGP_AJ_T0063337.1 MGP_AJ_G0027755.1 mouse_genomes_project 3 107852513 108194322 - MGP_AJ_P0063337 Ntng1 protein_coding protein_coding MGP_AJ_T0063338.1 MGP_AJ_G0027755.1 mouse_genomes_project 3 107852513 108194322 - MGP_AJ_P0063338 Ntng1 protein_coding protein_coding MGP_AJ_T0063339.1 MGP_AJ_G0027755.1 mouse_genomes_project 3 107852513 108194322 - MGP_AJ_P0063339 Ntng1 protein_coding protein_coding MGP_AJ_T0063340.1 MGP_AJ_G0027755.1 mouse_genomes_project 3 107852513 108194322 - MGP_AJ_P0063340 Ntng1 protein_coding protein_coding MGP_AJ_T0063341.1 MGP_AJ_G0027755.1 mouse_genomes_project 3 107852513 108194322 - MGP_AJ_P0063341 Ntng1 protein_coding protein_coding MGP_AJ_T0063342.1 MGP_AJ_G0027755.1 mouse_genomes_project 3 107901428 107903740 - Ntng1 protein_coding retained_intron MGP_AJ_T0063343.1 MGP_AJ_G0027755.1 mouse_genomes_project 3 107901428 108194282 - Ntng1 protein_coding retained_intron MGP_AJ_T0063344.1 MGP_AJ_G0027755.1 mouse_genomes_project 3 108202471 108202798 - MGP_AJ_P0063344 Ntng1 protein_coding protein_coding MGP_AJ_T0014140.1 MGP_AJ_G0012235.1 mouse_genomes_project 3 76697435 76698082 + processed_pseudogene processed_pseudogene MGP_AJ_T0060585.1 MGP_AJ_G0027125.1 mouse_genomes_project 3 34216281 34262367 + MGP_AJ_P0060585 Adad1 protein_coding protein_coding MGP_AJ_T0060586.1 MGP_AJ_G0027125.1 mouse_genomes_project 3 34216385 34261366 + MGP_AJ_P0060586 Adad1 protein_coding protein_coding MGP_AJ_T0060587.1 MGP_AJ_G0027125.1 mouse_genomes_project 3 34216432 34220110 + Adad1 protein_coding retained_intron MGP_AJ_T0060588.1 MGP_AJ_G0027125.1 mouse_genomes_project 3 34237660 34245741 + Adad1 protein_coding retained_intron MGP_AJ_T0060589.1 MGP_AJ_G0027125.1 mouse_genomes_project 3 34237797 34271775 + MGP_AJ_P0060589 Adad1 protein_coding protein_coding MGP_AJ_T0010562.1 MGP_AJ_G0008684.1 mouse_genomes_project 3 144525699 144525773 - Gm22901 miRNA miRNA MGP_AJ_T0060728.1 MGP_AJ_G0027149.1 mouse_genomes_project 3 42402092 42406730 + MGP_AJ_P0060728 Pcdh10 protein_coding protein_coding MGP_AJ_T0060729.1 MGP_AJ_G0027149.1 mouse_genomes_project 3 42402100 42427049 + MGP_AJ_P0060729 Pcdh10 protein_coding protein_coding MGP_AJ_T0060730.1 MGP_AJ_G0027149.1 mouse_genomes_project 3 42402119 42459958 + MGP_AJ_P0060730 Pcdh10 protein_coding protein_coding MGP_AJ_T0060731.1 MGP_AJ_G0027149.1 mouse_genomes_project 3 42402121 42448034 + MGP_AJ_P0060731 Pcdh10 protein_coding protein_coding MGP_AJ_T0060732.1 MGP_AJ_G0027149.1 mouse_genomes_project 3 42406327 42456821 + Pcdh10 protein_coding processed_transcript MGP_AJ_T0063387.1 MGP_AJ_G0027765.1 mouse_genomes_project 3 114123396 114143037 - MGP_AJ_P0063387 Vcam1 protein_coding protein_coding MGP_AJ_T0063388.1 MGP_AJ_G0027765.1 mouse_genomes_project 3 114130062 114134149 - Vcam1 protein_coding retained_intron MGP_AJ_T0063389.1 MGP_AJ_G0027765.1 mouse_genomes_project 3 114135696 114142806 - MGP_AJ_P0063389 Vcam1 protein_coding protein_coding MGP_AJ_T0063390.1 MGP_AJ_G0027765.1 mouse_genomes_project 3 114138035 114142284 - MGP_AJ_P0063390 Vcam1 protein_coding protein_coding MGP_AJ_T0001237.1 MGP_AJ_G0001161.1 mouse_genomes_project 3 63335493 63336602 + TEC TEC MGP_AJ_T0014186.1 MGP_AJ_G0012281.1 mouse_genomes_project 3 92553542 92554371 + processed_pseudogene processed_pseudogene MGP_AJ_T0013950.1 MGP_AJ_G0012045.1 mouse_genomes_project 3 16702038 16702254 + processed_pseudogene processed_pseudogene MGP_AJ_T0064106.1 MGP_AJ_G0027898.1 mouse_genomes_project 3 140508288 140550491 + MGP_AJ_P0064106 Gbp5 protein_coding protein_coding MGP_AJ_T0064107.1 MGP_AJ_G0027898.1 mouse_genomes_project 3 140524158 140541441 + Gbp5 protein_coding processed_transcript MGP_AJ_T0064108.1 MGP_AJ_G0027898.1 mouse_genomes_project 3 140533131 140537682 + Gbp5 protein_coding retained_intron MGP_AJ_T0062144.1 MGP_AJ_G0027446.1 mouse_genomes_project 3 88203757 88205688 - MGP_AJ_P0062144 Gm5849 protein_coding protein_coding MGP_AJ_T0102535.1 MGP_AJ_G0040277.1 mouse_genomes_project 3 61539688 61543886 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0101127.1 MGP_AJ_G0039093.1 mouse_genomes_project 3 64766801 64766933 - Gm25919 snoRNA snoRNA MGP_AJ_T0061406.1 MGP_AJ_G0027306.1 mouse_genomes_project 3 81550240 81588141 - MGP_AJ_P0061406 Fhdc1 protein_coding protein_coding MGP_AJ_T0061407.1 MGP_AJ_G0027306.1 mouse_genomes_project 3 81552080 81587206 - MGP_AJ_P0061407 Fhdc1 protein_coding protein_coding MGP_AJ_T0061408.1 MGP_AJ_G0027306.1 mouse_genomes_project 3 81552153 81588105 - MGP_AJ_P0061408 Fhdc1 protein_coding protein_coding MGP_AJ_T0061409.1 MGP_AJ_G0027306.1 mouse_genomes_project 3 81556861 81561732 - Fhdc1 protein_coding retained_intron MGP_AJ_T0061410.1 MGP_AJ_G0027306.1 mouse_genomes_project 3 81582221 81586697 - Fhdc1 protein_coding processed_transcript MGP_AJ_T0007495.1 MGP_AJ_G0006138.1 mouse_genomes_project 3 31030513 31061488 - 4930431L21Rik lincRNA lincRNA MGP_AJ_T0007496.1 MGP_AJ_G0006138.1 mouse_genomes_project 3 31034674 31035652 - 4930431L21Rik lincRNA lincRNA MGP_AJ_T0001147.1 MGP_AJ_G0001073.1 mouse_genomes_project 3 32961887 32962446 + TEC TEC MGP_AJ_T0099837.1 MGP_AJ_G0037803.1 mouse_genomes_project 3 69933110 69933261 - Gm22451 snRNA snRNA MGP_AJ_T0064339.1 MGP_AJ_G0027946.1 mouse_genomes_project 3 150370608 150403750 - Dnajb4 protein_coding processed_transcript MGP_AJ_T0064340.1 MGP_AJ_G0027946.1 mouse_genomes_project 3 150376051 150386639 - MGP_AJ_P0064340 Dnajb4 protein_coding protein_coding MGP_AJ_T0064341.1 MGP_AJ_G0027946.1 mouse_genomes_project 3 150376078 150403554 - MGP_AJ_P0064341 Dnajb4 protein_coding protein_coding MGP_AJ_T0064342.1 MGP_AJ_G0027946.1 mouse_genomes_project 3 150377181 150403490 - MGP_AJ_P0064342 Dnajb4 protein_coding protein_coding MGP_AJ_T0064343.1 MGP_AJ_G0027946.1 mouse_genomes_project 3 150386170 150403528 - Dnajb4 protein_coding processed_transcript MGP_AJ_T0064344.1 MGP_AJ_G0027946.1 mouse_genomes_project 3 150386356 150403528 - MGP_AJ_P0064344 Dnajb4 protein_coding protein_coding MGP_AJ_T0064345.1 MGP_AJ_G0027946.1 mouse_genomes_project 3 150398859 150403773 - Dnajb4 protein_coding retained_intron MGP_AJ_T0061037.1 MGP_AJ_G0027215.1 mouse_genomes_project 3 58201306 58207496 + MGP_AJ_P0061037 P2ry1 protein_coding protein_coding MGP_AJ_T0061038.1 MGP_AJ_G0027215.1 mouse_genomes_project 3 58201306 58207493 + MGP_AJ_P0061038 P2ry1 protein_coding protein_coding MGP_AJ_T0061039.1 MGP_AJ_G0027215.1 mouse_genomes_project 3 58201310 58203511 + MGP_AJ_P0061039 P2ry1 protein_coding protein_coding MGP_AJ_T0064485.1 MGP_AJ_G0027964.1 mouse_genomes_project 3 152887963 152993119 + MGP_AJ_P0064485 protein_coding protein_coding MGP_AJ_T0064486.1 MGP_AJ_G0027964.1 mouse_genomes_project 3 152935863 152974406 + MGP_AJ_P0064486 protein_coding protein_coding MGP_AJ_T0064487.1 MGP_AJ_G0027964.1 mouse_genomes_project 3 152936610 152938837 + protein_coding processed_transcript MGP_AJ_T0064488.1 MGP_AJ_G0027964.1 mouse_genomes_project 3 152989652 152993116 + MGP_AJ_P0064488 protein_coding protein_coding MGP_AJ_T0001135.1 MGP_AJ_G0001061.1 mouse_genomes_project 3 28097635 28097945 - TEC TEC MGP_AJ_T0060877.1 MGP_AJ_G0027179.1 mouse_genomes_project 3 52106261 52111430 - MGP_AJ_P0060877 Ccna1 protein_coding protein_coding MGP_AJ_T0060878.1 MGP_AJ_G0027179.1 mouse_genomes_project 3 52106267 52115915 - MGP_AJ_P0060878 Ccna1 protein_coding protein_coding MGP_AJ_T0060879.1 MGP_AJ_G0027179.1 mouse_genomes_project 3 52106269 52115902 - MGP_AJ_P0060879 Ccna1 protein_coding protein_coding MGP_AJ_T0060880.1 MGP_AJ_G0027179.1 mouse_genomes_project 3 52106270 52116361 - MGP_AJ_P0060880 Ccna1 protein_coding protein_coding MGP_AJ_T0060881.1 MGP_AJ_G0027179.1 mouse_genomes_project 3 52111377 52116342 - MGP_AJ_P0060881 Ccna1 protein_coding protein_coding MGP_AJ_T0060882.1 MGP_AJ_G0027179.1 mouse_genomes_project 3 52111771 52115897 - MGP_AJ_P0060882 Ccna1 protein_coding protein_coding MGP_AJ_T0004244.1 MGP_AJ_G0003731.1 mouse_genomes_project 3 52439184 52464941 - Gm42609 antisense antisense MGP_AJ_T0004245.1 MGP_AJ_G0003731.1 mouse_genomes_project 3 52442082 52462843 - Gm42609 antisense antisense MGP_AJ_T0004255.1 MGP_AJ_G0003739.1 mouse_genomes_project 3 62374980 62543065 - antisense antisense MGP_AJ_T0004256.1 MGP_AJ_G0003739.1 mouse_genomes_project 3 62534635 62543037 - antisense antisense MGP_AJ_T0101788.1 MGP_AJ_G0039702.1 mouse_genomes_project 3 92016517 92017214 - transcribed_processed_pseudogene processed_transcript MGP_AJ_T0101789.1 MGP_AJ_G0039702.1 mouse_genomes_project 3 92016693 92017456 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0098961.1 MGP_AJ_G0036938.1 mouse_genomes_project 3 92096909 92101795 + Gm42463 sense_intronic sense_intronic MGP_AJ_T0061719.1 MGP_AJ_G0027370.1 mouse_genomes_project 3 85857888 85884898 + MGP_AJ_P0061719 2810403A07Rik protein_coding protein_coding MGP_AJ_T0061720.1 MGP_AJ_G0027370.1 mouse_genomes_project 3 85857899 85860147 + 2810403A07Rik protein_coding retained_intron MGP_AJ_T0061721.1 MGP_AJ_G0027370.1 mouse_genomes_project 3 85857912 85884828 + MGP_AJ_P0061721 2810403A07Rik protein_coding nonsense_mediated_decay MGP_AJ_T0061722.1 MGP_AJ_G0027370.1 mouse_genomes_project 3 85857912 85884536 + MGP_AJ_P0061722 2810403A07Rik protein_coding nonsense_mediated_decay MGP_AJ_T0061723.1 MGP_AJ_G0027370.1 mouse_genomes_project 3 85857918 85873600 + 2810403A07Rik protein_coding retained_intron MGP_AJ_T0061724.1 MGP_AJ_G0027370.1 mouse_genomes_project 3 85857922 85883977 + MGP_AJ_P0061724 2810403A07Rik protein_coding nonsense_mediated_decay MGP_AJ_T0061725.1 MGP_AJ_G0027370.1 mouse_genomes_project 3 85865415 85880882 + 2810403A07Rik protein_coding processed_transcript MGP_AJ_T0061726.1 MGP_AJ_G0027370.1 mouse_genomes_project 3 85870830 85872903 + 2810403A07Rik protein_coding retained_intron MGP_AJ_T0061727.1 MGP_AJ_G0027370.1 mouse_genomes_project 3 85871626 85880961 + 2810403A07Rik protein_coding retained_intron MGP_AJ_T0061728.1 MGP_AJ_G0027370.1 mouse_genomes_project 3 85880753 85883059 + 2810403A07Rik protein_coding processed_transcript MGP_AJ_T0007602.1 MGP_AJ_G0006221.1 mouse_genomes_project 3 82668747 82677823 - Gm42812 lincRNA lincRNA MGP_AJ_T0004248.1 MGP_AJ_G0003733.1 mouse_genomes_project 3 56063597 56067284 - Gm43570 antisense antisense MGP_AJ_T0017950.1 MGP_AJ_G0015480.1 mouse_genomes_project 3 48575985 48583095 + 5031434O11Rik processed_transcript antisense MGP_AJ_T0017951.1 MGP_AJ_G0015480.1 mouse_genomes_project 3 48578421 48583083 + 5031434O11Rik processed_transcript antisense MGP_AJ_T0017952.1 MGP_AJ_G0015480.1 mouse_genomes_project 3 48579591 48583089 + 5031434O11Rik processed_transcript retained_intron MGP_AJ_T0063017.1 MGP_AJ_G0027676.1 mouse_genomes_project 3 103003522 103018412 + MGP_AJ_P0063017 4930564D02Rik protein_coding protein_coding MGP_AJ_T0004380.1 MGP_AJ_G0003822.1 mouse_genomes_project 3 131951387 132247463 - antisense antisense MGP_AJ_T0004381.1 MGP_AJ_G0003822.1 mouse_genomes_project 3 132160613 132247610 - antisense antisense MGP_AJ_T0061850.1 MGP_AJ_G0027388.1 mouse_genomes_project 3 86474227 86478525 + MGP_AJ_P0061850 Muc1 protein_coding protein_coding MGP_AJ_T0061851.1 MGP_AJ_G0027388.1 mouse_genomes_project 3 86476400 86477244 + Muc1 protein_coding processed_transcript MGP_AJ_T0061852.1 MGP_AJ_G0027388.1 mouse_genomes_project 3 86476632 86478341 + Muc1 protein_coding processed_transcript MGP_AJ_T0010498.1 MGP_AJ_G0008620.1 mouse_genomes_project 3 24160686 24160821 - Gm44464 miRNA miRNA MGP_AJ_T0061090.1 MGP_AJ_G0027231.1 mouse_genomes_project 3 62351308 62607835 + Kcnab1 protein_coding processed_transcript MGP_AJ_T0061091.1 MGP_AJ_G0027231.1 mouse_genomes_project 3 62351308 62620383 + MGP_AJ_P0061091 Kcnab1 protein_coding protein_coding MGP_AJ_T0061092.1 MGP_AJ_G0027231.1 mouse_genomes_project 3 62430509 62620387 + Kcnab1 protein_coding processed_transcript MGP_AJ_T0061093.1 MGP_AJ_G0027231.1 mouse_genomes_project 3 62493453 62619248 + Kcnab1 protein_coding processed_transcript MGP_AJ_T0061094.1 MGP_AJ_G0027231.1 mouse_genomes_project 3 62537793 62599042 + Kcnab1 protein_coding processed_transcript MGP_AJ_T0061095.1 MGP_AJ_G0027231.1 mouse_genomes_project 3 62595673 62600777 + Kcnab1 protein_coding retained_intron MGP_AJ_T0101177.1 MGP_AJ_G0039143.1 mouse_genomes_project 3 152129125 152129206 - Gm24494 snoRNA snoRNA MGP_AJ_T0007597.1 MGP_AJ_G0006216.1 mouse_genomes_project 3 80214005 80217975 - Gm10710 lincRNA lincRNA MGP_AJ_T0098837.1 MGP_AJ_G0036821.1 mouse_genomes_project 3 60320662 60320804 + Gm22433 scaRNA scaRNA MGP_AJ_T0013905.1 MGP_AJ_G0012000.1 mouse_genomes_project 3 4518249 4518369 - processed_pseudogene processed_pseudogene MGP_AJ_T0060871.1 MGP_AJ_G0027176.1 mouse_genomes_project 3 51811821 51859437 + MGP_AJ_P0060871 Smad9 protein_coding protein_coding MGP_AJ_T0004375.1 MGP_AJ_G0003817.1 mouse_genomes_project 3 127813901 127819061 + Gm42650 antisense antisense MGP_AJ_T0004315.1 MGP_AJ_G0003781.1 mouse_genomes_project 3 98007815 98014028 - Spag17os antisense antisense MGP_AJ_T0004316.1 MGP_AJ_G0003781.1 mouse_genomes_project 3 98009790 98014028 - Spag17os antisense antisense MGP_AJ_T0004366.1 MGP_AJ_G0003810.1 mouse_genomes_project 3 122454890 122456579 + Gm42823 antisense antisense MGP_AJ_T0004257.1 MGP_AJ_G0003740.1 mouse_genomes_project 3 62565734 62590632 - A730090N16Rik antisense antisense MGP_AJ_T0061293.1 MGP_AJ_G0027277.1 mouse_genomes_project 3 76744780 76748518 + MGP_AJ_P0061293 4930579G24Rik protein_coding protein_coding MGP_AJ_T0060562.1 MGP_AJ_G0027124.1 mouse_genomes_project 3 34002078 34029307 + 4932438A13Rik protein_coding retained_intron MGP_AJ_T0060563.1 MGP_AJ_G0027124.1 mouse_genomes_project 3 34002080 34205763 + MGP_AJ_P0060563 4932438A13Rik protein_coding protein_coding MGP_AJ_T0060564.1 MGP_AJ_G0027124.1 mouse_genomes_project 3 34002095 34028010 + 4932438A13Rik protein_coding retained_intron MGP_AJ_T0060565.1 MGP_AJ_G0027124.1 mouse_genomes_project 3 34002095 34085173 + 4932438A13Rik protein_coding retained_intron MGP_AJ_T0060566.1 MGP_AJ_G0027124.1 mouse_genomes_project 3 34002128 34205750 + MGP_AJ_P0060566 4932438A13Rik protein_coding unknown_likely_coding MGP_AJ_T0060567.1 MGP_AJ_G0027124.1 mouse_genomes_project 3 34002130 34089930 + MGP_AJ_P0060567 4932438A13Rik protein_coding nonsense_mediated_decay MGP_AJ_T0060568.1 MGP_AJ_G0027124.1 mouse_genomes_project 3 34003443 34070601 + 4932438A13Rik protein_coding retained_intron MGP_AJ_T0060569.1 MGP_AJ_G0027124.1 mouse_genomes_project 3 34008993 34205763 + MGP_AJ_P0060569 4932438A13Rik protein_coding protein_coding MGP_AJ_T0060570.1 MGP_AJ_G0027124.1 mouse_genomes_project 3 34009006 34028017 + 4932438A13Rik protein_coding retained_intron MGP_AJ_T0060571.1 MGP_AJ_G0027124.1 mouse_genomes_project 3 34029784 34035524 + 4932438A13Rik protein_coding retained_intron MGP_AJ_T0060572.1 MGP_AJ_G0027124.1 mouse_genomes_project 3 34035433 34089932 + MGP_AJ_P0060572 4932438A13Rik protein_coding nonsense_mediated_decay MGP_AJ_T0060573.1 MGP_AJ_G0027124.1 mouse_genomes_project 3 34042091 34058237 + 4932438A13Rik protein_coding retained_intron MGP_AJ_T0060574.1 MGP_AJ_G0027124.1 mouse_genomes_project 3 34087998 34089927 + 4932438A13Rik protein_coding retained_intron MGP_AJ_T0060575.1 MGP_AJ_G0027124.1 mouse_genomes_project 3 34155263 34205745 + MGP_AJ_P0060575 4932438A13Rik protein_coding protein_coding MGP_AJ_T0060576.1 MGP_AJ_G0027124.1 mouse_genomes_project 3 34159660 34205746 + MGP_AJ_P0060576 4932438A13Rik protein_coding protein_coding MGP_AJ_T0060577.1 MGP_AJ_G0027124.1 mouse_genomes_project 3 34159791 34205744 + MGP_AJ_P0060577 4932438A13Rik protein_coding protein_coding MGP_AJ_T0060578.1 MGP_AJ_G0027124.1 mouse_genomes_project 3 34162589 34178084 + MGP_AJ_P0060578 4932438A13Rik protein_coding protein_coding MGP_AJ_T0060579.1 MGP_AJ_G0027124.1 mouse_genomes_project 3 34166914 34171913 + 4932438A13Rik protein_coding retained_intron MGP_AJ_T0060580.1 MGP_AJ_G0027124.1 mouse_genomes_project 3 34168237 34172143 + 4932438A13Rik protein_coding retained_intron MGP_AJ_T0060581.1 MGP_AJ_G0027124.1 mouse_genomes_project 3 34172485 34185882 + 4932438A13Rik protein_coding retained_intron MGP_AJ_T0060582.1 MGP_AJ_G0027124.1 mouse_genomes_project 3 34185864 34188973 + 4932438A13Rik protein_coding retained_intron MGP_AJ_T0060583.1 MGP_AJ_G0027124.1 mouse_genomes_project 3 34186561 34188975 + 4932438A13Rik protein_coding retained_intron MGP_AJ_T0060584.1 MGP_AJ_G0027124.1 mouse_genomes_project 3 34191744 34194488 + 4932438A13Rik protein_coding retained_intron MGP_AJ_T0101157.1 MGP_AJ_G0039123.1 mouse_genomes_project 3 113396420 113396552 + Gm22337 snoRNA snoRNA MGP_AJ_T0001355.1 MGP_AJ_G0001278.1 mouse_genomes_project 3 130766922 130768889 + TEC TEC MGP_AJ_T0063204.1 MGP_AJ_G0027727.1 mouse_genomes_project 3 106207218 106213780 - MGP_AJ_P0063204 Gpr61 protein_coding protein_coding MGP_AJ_T0063205.1 MGP_AJ_G0027727.1 mouse_genomes_project 3 106207554 106213780 - MGP_AJ_P0063205 Gpr61 protein_coding nonsense_mediated_decay MGP_AJ_T0014197.1 MGP_AJ_G0012292.1 mouse_genomes_project 3 94186518 94188274 - processed_pseudogene processed_pseudogene MGP_AJ_T0060263.1 MGP_AJ_G0027072.1 mouse_genomes_project 3 24547878 24844897 - MGP_AJ_P0060263 Fndc3b protein_coding protein_coding MGP_AJ_T0060264.1 MGP_AJ_G0027072.1 mouse_genomes_project 3 24547878 24844938 - MGP_AJ_P0060264 Fndc3b protein_coding protein_coding MGP_AJ_T0060265.1 MGP_AJ_G0027072.1 mouse_genomes_project 3 24624440 24845806 - Fndc3b protein_coding retained_intron MGP_AJ_T0060266.1 MGP_AJ_G0027072.1 mouse_genomes_project 3 24631453 24845738 - MGP_AJ_P0060266 Fndc3b protein_coding protein_coding MGP_AJ_T0064266.1 MGP_AJ_G0027934.1 mouse_genomes_project 3 144701154 144757296 + MGP_AJ_P0064266 Uox protein_coding protein_coding MGP_AJ_T0064269.1 MGP_AJ_G0027934.1 mouse_genomes_project 3 144727307 144763685 + MGP_AJ_P0064269 Uox protein_coding protein_coding MGP_AJ_T0064270.1 MGP_AJ_G0027934.1 mouse_genomes_project 3 144727378 144742562 + MGP_AJ_P0064270 Uox protein_coding protein_coding MGP_AJ_T0064271.1 MGP_AJ_G0027934.1 mouse_genomes_project 3 144727395 144762025 + MGP_AJ_P0064271 Uox protein_coding protein_coding MGP_AJ_T0064272.1 MGP_AJ_G0027934.1 mouse_genomes_project 3 144727396 144742680 + Uox protein_coding retained_intron MGP_AJ_T0064273.1 MGP_AJ_G0027934.1 mouse_genomes_project 3 144740221 144742585 + Uox protein_coding retained_intron MGP_AJ_T0007517.1 MGP_AJ_G0006157.1 mouse_genomes_project 3 35228573 35257626 - Gm43821 lincRNA lincRNA MGP_AJ_T0062321.1 MGP_AJ_G0027523.1 mouse_genomes_project 3 92743562 92748780 - protein_coding retained_intron MGP_AJ_T0062322.1 MGP_AJ_G0027523.1 mouse_genomes_project 3 92743803 92752341 - MGP_AJ_P0062322 protein_coding unknown_likely_coding MGP_AJ_T0062323.1 MGP_AJ_G0027523.1 mouse_genomes_project 3 92743804 92752197 - protein_coding retained_intron MGP_AJ_T0062324.1 MGP_AJ_G0027523.1 mouse_genomes_project 3 92743804 92752378 - protein_coding retained_intron MGP_AJ_T0062325.1 MGP_AJ_G0027523.1 mouse_genomes_project 3 92743809 92752411 - MGP_AJ_P0062325 protein_coding nonsense_mediated_decay MGP_AJ_T0062326.1 MGP_AJ_G0027523.1 mouse_genomes_project 3 92748812 92752422 - MGP_AJ_P0062326 protein_coding protein_coding MGP_AJ_T0062327.1 MGP_AJ_G0027523.1 mouse_genomes_project 3 92748941 92752198 - MGP_AJ_P0062327 protein_coding protein_coding MGP_AJ_T0062328.1 MGP_AJ_G0027523.1 mouse_genomes_project 3 92749146 92752192 - MGP_AJ_P0062328 protein_coding protein_coding MGP_AJ_T0063607.1 MGP_AJ_G0027807.1 mouse_genomes_project 3 121364957 121465445 + MGP_AJ_P0063607 Sec24d protein_coding protein_coding MGP_AJ_T0063608.1 MGP_AJ_G0027807.1 mouse_genomes_project 3 121364981 121377512 + Sec24d protein_coding retained_intron MGP_AJ_T0063609.1 MGP_AJ_G0027807.1 mouse_genomes_project 3 121364992 121371912 + MGP_AJ_P0063609 Sec24d protein_coding protein_coding MGP_AJ_T0063610.1 MGP_AJ_G0027807.1 mouse_genomes_project 3 121389208 121465440 + Sec24d protein_coding retained_intron MGP_AJ_T0063611.1 MGP_AJ_G0027807.1 mouse_genomes_project 3 121433530 121435471 + Sec24d protein_coding retained_intron MGP_AJ_T0063612.1 MGP_AJ_G0027807.1 mouse_genomes_project 3 121436000 121449787 + Sec24d protein_coding processed_transcript MGP_AJ_T0063613.1 MGP_AJ_G0027807.1 mouse_genomes_project 3 121454709 121455767 + Sec24d protein_coding retained_intron MGP_AJ_T0063614.1 MGP_AJ_G0027807.1 mouse_genomes_project 3 121464517 121465440 + Sec24d protein_coding retained_intron MGP_AJ_T0060538.1 MGP_AJ_G0027120.1 mouse_genomes_project 3 33700613 33713622 + MGP_AJ_P0060538 Exosc9 protein_coding protein_coding MGP_AJ_T0060539.1 MGP_AJ_G0027120.1 mouse_genomes_project 3 33700613 33711157 + MGP_AJ_P0060539 Exosc9 protein_coding nonsense_mediated_decay MGP_AJ_T0060540.1 MGP_AJ_G0027120.1 mouse_genomes_project 3 33700621 33704755 + Exosc9 protein_coding retained_intron MGP_AJ_T0060541.1 MGP_AJ_G0027120.1 mouse_genomes_project 3 33700634 33704974 + Exosc9 protein_coding retained_intron MGP_AJ_T0060542.1 MGP_AJ_G0027120.1 mouse_genomes_project 3 33700645 33704928 + MGP_AJ_P0060542 Exosc9 protein_coding protein_coding MGP_AJ_T0060543.1 MGP_AJ_G0027120.1 mouse_genomes_project 3 33700658 33709402 + Exosc9 protein_coding retained_intron MGP_AJ_T0060544.1 MGP_AJ_G0027120.1 mouse_genomes_project 3 33703540 33711132 + MGP_AJ_P0060544 Exosc9 protein_coding protein_coding MGP_AJ_T0060545.1 MGP_AJ_G0027120.1 mouse_genomes_project 3 33710189 33713540 + MGP_AJ_P0060545 Exosc9 protein_coding protein_coding MGP_AJ_T0007732.1 MGP_AJ_G0006322.1 mouse_genomes_project 3 136756459 136772514 - 4930425O10Rik lincRNA lincRNA MGP_AJ_T0007469.1 MGP_AJ_G0006119.1 mouse_genomes_project 3 14442060 14447790 - Gm30340 lincRNA lincRNA MGP_AJ_T0014085.1 MGP_AJ_G0012180.1 mouse_genomes_project 3 62635652 62637943 + processed_pseudogene processed_pseudogene MGP_AJ_T0014178.1 MGP_AJ_G0012273.1 mouse_genomes_project 3 90818616 90821174 + processed_pseudogene processed_pseudogene MGP_AJ_T0060105.1 MGP_AJ_G0027034.1 mouse_genomes_project 3 7549463 7571754 - MGP_AJ_P0060105 Snx16 protein_coding protein_coding MGP_AJ_T0060106.1 MGP_AJ_G0027034.1 mouse_genomes_project 3 7549792 7571739 - MGP_AJ_P0060106 Snx16 protein_coding protein_coding MGP_AJ_T0060107.1 MGP_AJ_G0027034.1 mouse_genomes_project 3 7550584 7571752 - MGP_AJ_P0060107 Snx16 protein_coding protein_coding MGP_AJ_T0062145.1 MGP_AJ_G0027447.1 mouse_genomes_project 3 88386067 88388734 - MGP_AJ_P0062145 9130204L05Rik protein_coding protein_coding MGP_AJ_T0098999.1 MGP_AJ_G0036976.1 mouse_genomes_project 3 102418027 102424075 - Gm43696 sense_intronic sense_intronic MGP_AJ_T0060141.1 MGP_AJ_G0027045.1 mouse_genomes_project 3 13063887 13140563 - MGP_AJ_P0060141 Gm5150 protein_coding unknown_likely_coding MGP_AJ_T0063811.1 MGP_AJ_G0027840.1 mouse_genomes_project 3 128762754 128776325 - MGP_AJ_P0063811 Ostc protein_coding protein_coding MGP_AJ_T0063812.1 MGP_AJ_G0027840.1 mouse_genomes_project 3 128762761 128763465 - Ostc protein_coding retained_intron MGP_AJ_T0063813.1 MGP_AJ_G0027840.1 mouse_genomes_project 3 128774577 128776297 - Ostc protein_coding retained_intron MGP_AJ_T0098955.1 MGP_AJ_G0036933.1 mouse_genomes_project 3 22852181 22857956 - Gm37573 sense_intronic sense_intronic MGP_AJ_T0064389.1 MGP_AJ_G0027950.1 mouse_genomes_project 3 150533927 150582143 + MGP_AJ_P0064389 Usp33 protein_coding protein_coding MGP_AJ_T0064390.1 MGP_AJ_G0027950.1 mouse_genomes_project 3 150533927 150581864 + MGP_AJ_P0064390 Usp33 protein_coding protein_coding MGP_AJ_T0064391.1 MGP_AJ_G0027950.1 mouse_genomes_project 3 150533938 150582148 + MGP_AJ_P0064391 Usp33 protein_coding protein_coding MGP_AJ_T0064392.1 MGP_AJ_G0027950.1 mouse_genomes_project 3 150533961 150560399 + MGP_AJ_P0064392 Usp33 protein_coding nonsense_mediated_decay MGP_AJ_T0064393.1 MGP_AJ_G0027950.1 mouse_genomes_project 3 150533964 150546738 + Usp33 protein_coding retained_intron MGP_AJ_T0064394.1 MGP_AJ_G0027950.1 mouse_genomes_project 3 150550305 150556985 + Usp33 protein_coding processed_transcript MGP_AJ_T0064395.1 MGP_AJ_G0027950.1 mouse_genomes_project 3 150552335 150555650 + Usp33 protein_coding retained_intron MGP_AJ_T0064396.1 MGP_AJ_G0027950.1 mouse_genomes_project 3 150554711 150562120 + Usp33 protein_coding retained_intron MGP_AJ_T0064397.1 MGP_AJ_G0027950.1 mouse_genomes_project 3 150556923 150563490 + MGP_AJ_P0064397 Usp33 protein_coding nonsense_mediated_decay MGP_AJ_T0064398.1 MGP_AJ_G0027950.1 mouse_genomes_project 3 150570551 150581038 + Usp33 protein_coding processed_transcript MGP_AJ_T0064399.1 MGP_AJ_G0027950.1 mouse_genomes_project 3 150571039 150572758 + Usp33 protein_coding retained_intron MGP_AJ_T0014278.1 MGP_AJ_G0012373.1 mouse_genomes_project 3 115274331 115274709 - processed_pseudogene processed_pseudogene MGP_AJ_T0063875.1 MGP_AJ_G0027855.1 mouse_genomes_project 3 131109418 131228764 - MGP_AJ_P0063875 protein_coding protein_coding MGP_AJ_T0063876.1 MGP_AJ_G0027855.1 mouse_genomes_project 3 131113572 131129378 - MGP_AJ_P0063876 protein_coding protein_coding MGP_AJ_T0063877.1 MGP_AJ_G0027855.1 mouse_genomes_project 3 131152544 131228764 - MGP_AJ_P0063877 protein_coding protein_coding MGP_AJ_T0063878.1 MGP_AJ_G0027855.1 mouse_genomes_project 3 131166012 131228824 - MGP_AJ_P0063878 protein_coding protein_coding MGP_AJ_T0010540.1 MGP_AJ_G0008662.1 mouse_genomes_project 3 106633448 106633522 - Gm22860 miRNA miRNA MGP_AJ_T0014153.1 MGP_AJ_G0012248.1 mouse_genomes_project 3 83386158 83386504 - processed_pseudogene processed_pseudogene MGP_AJ_T0004390.1 MGP_AJ_G0003828.1 mouse_genomes_project 3 136254729 136283877 - 0610031O16Rik antisense antisense MGP_AJ_T0004391.1 MGP_AJ_G0003828.1 mouse_genomes_project 3 136261842 136283877 - 0610031O16Rik antisense antisense MGP_AJ_T0004392.1 MGP_AJ_G0003828.1 mouse_genomes_project 3 136270715 136283893 - 0610031O16Rik antisense antisense MGP_AJ_T0004393.1 MGP_AJ_G0003828.1 mouse_genomes_project 3 136273222 136284619 - 0610031O16Rik antisense antisense MGP_AJ_T0063370.1 MGP_AJ_G0027761.1 mouse_genomes_project 3 113729799 113734461 - MGP_AJ_P0063370 S1pr1 protein_coding protein_coding MGP_AJ_T0001130.1 MGP_AJ_G0001056.1 mouse_genomes_project 3 27392980 27395095 - TEC TEC MGP_AJ_T0013895.1 MGP_AJ_G0011990.1 mouse_genomes_project 3 1484616 1484833 + processed_pseudogene processed_pseudogene MGP_AJ_T0001267.1 MGP_AJ_G0001191.1 mouse_genomes_project 3 93391539 93393276 + TEC TEC MGP_AJ_T0014107.1 MGP_AJ_G0012202.1 mouse_genomes_project 3 66760274 66761227 - processed_pseudogene processed_pseudogene MGP_AJ_T0101116.1 MGP_AJ_G0039082.1 mouse_genomes_project 3 38481057 38481182 - Gm25487 snoRNA snoRNA MGP_AJ_T0099825.1 MGP_AJ_G0037791.1 mouse_genomes_project 3 52611728 52611835 + Gm25404 snRNA snRNA MGP_AJ_T0001263.1 MGP_AJ_G0001187.1 mouse_genomes_project 3 90886485 90889015 + TEC TEC MGP_AJ_T0010528.1 MGP_AJ_G0008650.1 mouse_genomes_project 3 87341213 87341293 + Mir190b miRNA miRNA MGP_AJ_T0007690.1 MGP_AJ_G0006285.1 mouse_genomes_project 3 119787112 119787930 - Gm43607 lincRNA lincRNA MGP_AJ_T0064052.1 MGP_AJ_G0027889.1 mouse_genomes_project 3 136498710 136529110 - MGP_AJ_P0064052 Metap1 protein_coding protein_coding MGP_AJ_T0064053.1 MGP_AJ_G0027889.1 mouse_genomes_project 3 136499435 136508680 - MGP_AJ_P0064053 Metap1 protein_coding protein_coding MGP_AJ_T0064054.1 MGP_AJ_G0027889.1 mouse_genomes_project 3 136505993 136514842 - Metap1 protein_coding retained_intron MGP_AJ_T0064055.1 MGP_AJ_G0027889.1 mouse_genomes_project 3 136506054 136514931 - Metap1 protein_coding retained_intron MGP_AJ_T0064056.1 MGP_AJ_G0027889.1 mouse_genomes_project 3 136508678 136521336 - Metap1 protein_coding processed_transcript MGP_AJ_T0064057.1 MGP_AJ_G0027889.1 mouse_genomes_project 3 136515186 136528994 - MGP_AJ_P0064057 Metap1 protein_coding protein_coding MGP_AJ_T0064058.1 MGP_AJ_G0027889.1 mouse_genomes_project 3 136519796 136528964 - Metap1 protein_coding retained_intron MGP_AJ_T0063562.1 MGP_AJ_G0027797.1 mouse_genomes_project 3 120384191 120519984 + Bcar3 protein_coding retained_intron MGP_AJ_T0063563.1 MGP_AJ_G0027797.1 mouse_genomes_project 3 120512750 120519702 + Bcar3 protein_coding retained_intron MGP_AJ_T0063564.1 MGP_AJ_G0027797.1 mouse_genomes_project 3 120512771 120624219 + MGP_AJ_P0063564 Bcar3 protein_coding protein_coding MGP_AJ_T0063565.1 MGP_AJ_G0027797.1 mouse_genomes_project 3 120512816 120565641 + Bcar3 protein_coding processed_transcript MGP_AJ_T0063566.1 MGP_AJ_G0027797.1 mouse_genomes_project 3 120577762 120602481 + MGP_AJ_P0063566 Bcar3 protein_coding protein_coding MGP_AJ_T0063567.1 MGP_AJ_G0027797.1 mouse_genomes_project 3 120598707 120602482 + MGP_AJ_P0063567 Bcar3 protein_coding protein_coding MGP_AJ_T0063568.1 MGP_AJ_G0027797.1 mouse_genomes_project 3 120602096 120606770 + Bcar3 protein_coding retained_intron MGP_AJ_T0063569.1 MGP_AJ_G0027797.1 mouse_genomes_project 3 120605149 120606958 + MGP_AJ_P0063569 Bcar3 protein_coding protein_coding MGP_AJ_T0063570.1 MGP_AJ_G0027797.1 mouse_genomes_project 3 120606242 120617238 + MGP_AJ_P0063570 Bcar3 protein_coding protein_coding MGP_AJ_T0063571.1 MGP_AJ_G0027797.1 mouse_genomes_project 3 120618673 120619433 + Bcar3 protein_coding retained_intron MGP_AJ_T0060142.1 MGP_AJ_G0027046.1 mouse_genomes_project 3 13326723 13360457 + MGP_AJ_P0060142 Ythdf3 protein_coding protein_coding MGP_AJ_T0060143.1 MGP_AJ_G0027046.1 mouse_genomes_project 3 13326747 13347294 + Ythdf3 protein_coding processed_transcript MGP_AJ_T0060144.1 MGP_AJ_G0027046.1 mouse_genomes_project 3 13326747 13358425 + MGP_AJ_P0060144 Ythdf3 protein_coding protein_coding MGP_AJ_T0060145.1 MGP_AJ_G0027046.1 mouse_genomes_project 3 13326747 13360275 + MGP_AJ_P0060145 Ythdf3 protein_coding protein_coding MGP_AJ_T0010564.1 MGP_AJ_G0008686.1 mouse_genomes_project 3 151516403 151516515 + Gm27405 miRNA miRNA MGP_AJ_T0004319.1 MGP_AJ_G0003783.1 mouse_genomes_project 3 100132361 100135020 + Gm16160 antisense antisense MGP_AJ_T0099877.1 MGP_AJ_G0037843.1 mouse_genomes_project 3 130531631 130531737 - Gm25307 snRNA snRNA MGP_AJ_T0060260.1 MGP_AJ_G0027070.1 mouse_genomes_project 3 24451239 24472352 + MGP_AJ_P0060260 Tnfsf10 protein_coding protein_coding MGP_AJ_T0060261.1 MGP_AJ_G0027070.1 mouse_genomes_project 3 24451272 24474991 + MGP_AJ_P0060261 Tnfsf10 protein_coding protein_coding MGP_AJ_T0064518.1 MGP_AJ_G0027971.1 mouse_genomes_project 3 156142574 156174067 - MGP_AJ_P0064518 Cth protein_coding protein_coding MGP_AJ_T0064519.1 MGP_AJ_G0027971.1 mouse_genomes_project 3 156142749 156146039 - Cth protein_coding processed_transcript MGP_AJ_T0064520.1 MGP_AJ_G0027971.1 mouse_genomes_project 3 156145628 156154241 - Cth protein_coding retained_intron MGP_AJ_T0064521.1 MGP_AJ_G0027971.1 mouse_genomes_project 3 156168475 156174041 - Cth protein_coding retained_intron MGP_AJ_T0063345.1 MGP_AJ_G0027756.1 mouse_genomes_project 3 108300301 108305191 - MGP_AJ_P0063345 Prmt6 protein_coding nonsense_mediated_decay MGP_AJ_T0063346.1 MGP_AJ_G0027756.1 mouse_genomes_project 3 108300304 108305186 - MGP_AJ_P0063346 Prmt6 protein_coding protein_coding MGP_AJ_T0063347.1 MGP_AJ_G0027756.1 mouse_genomes_project 3 108302741 108305191 - MGP_AJ_P0063347 Prmt6 protein_coding protein_coding MGP_AJ_T0007526.1 MGP_AJ_G0006163.1 mouse_genomes_project 3 38213165 38222782 - Gm42784 lincRNA lincRNA MGP_AJ_T0062151.1 MGP_AJ_G0027453.1 mouse_genomes_project 3 89763318 89766482 + MGP_AJ_P0062151 protein_coding protein_coding MGP_AJ_T0062153.1 MGP_AJ_G0027453.1 mouse_genomes_project 3 89764047 89764729 + MGP_AJ_P0062153 protein_coding protein_coding MGP_AJ_T0010554.1 MGP_AJ_G0008676.1 mouse_genomes_project 3 132153335 132153429 - Gm44361 miRNA miRNA MGP_AJ_T0064290.1 MGP_AJ_G0027939.1 mouse_genomes_project 3 144986433 145073146 + Ttll7 protein_coding retained_intron MGP_AJ_T0064291.1 MGP_AJ_G0027939.1 mouse_genomes_project 3 144986433 145119947 + MGP_AJ_P0064291 Ttll7 protein_coding protein_coding MGP_AJ_T0064292.1 MGP_AJ_G0027939.1 mouse_genomes_project 3 144986433 145121206 + MGP_AJ_P0064292 Ttll7 protein_coding protein_coding MGP_AJ_T0064293.1 MGP_AJ_G0027939.1 mouse_genomes_project 3 145028896 145116948 + MGP_AJ_P0064293 Ttll7 protein_coding protein_coding MGP_AJ_T0064294.1 MGP_AJ_G0027939.1 mouse_genomes_project 3 145031376 145033227 + MGP_AJ_P0064294 Ttll7 protein_coding protein_coding MGP_AJ_T0064295.1 MGP_AJ_G0027939.1 mouse_genomes_project 3 145076729 145119117 + Ttll7 protein_coding retained_intron MGP_AJ_T0099859.1 MGP_AJ_G0037825.1 mouse_genomes_project 3 94150589 94150754 + Rnu1b1 snRNA snRNA MGP_AJ_T0063887.1 MGP_AJ_G0027857.1 mouse_genomes_project 3 131459333 131541201 - MGP_AJ_P0063887 Tet2 protein_coding protein_coding MGP_AJ_T0063888.1 MGP_AJ_G0027857.1 mouse_genomes_project 3 131459337 131471261 - Tet2 protein_coding retained_intron MGP_AJ_T0063889.1 MGP_AJ_G0027857.1 mouse_genomes_project 3 131459493 131541179 - MGP_AJ_P0063889 Tet2 protein_coding protein_coding MGP_AJ_T0063890.1 MGP_AJ_G0027857.1 mouse_genomes_project 3 131461673 131467644 - Tet2 protein_coding retained_intron MGP_AJ_T0063891.1 MGP_AJ_G0027857.1 mouse_genomes_project 3 131463353 131473045 - MGP_AJ_P0063891 Tet2 protein_coding protein_coding MGP_AJ_T0063892.1 MGP_AJ_G0027857.1 mouse_genomes_project 3 131471549 131475401 - Tet2 protein_coding retained_intron MGP_AJ_T0063893.1 MGP_AJ_G0027857.1 mouse_genomes_project 3 131475530 131477173 - Tet2 protein_coding retained_intron MGP_AJ_T0063894.1 MGP_AJ_G0027857.1 mouse_genomes_project 3 131485057 131541950 - MGP_AJ_P0063894 Tet2 protein_coding protein_coding MGP_AJ_T0063895.1 MGP_AJ_G0027857.1 mouse_genomes_project 3 131509442 131541113 - Tet2 protein_coding retained_intron MGP_AJ_T0063896.1 MGP_AJ_G0027857.1 mouse_genomes_project 3 131535523 131541097 - Tet2 protein_coding processed_transcript MGP_AJ_T0001350.1 MGP_AJ_G0001273.1 mouse_genomes_project 3 128949997 128950708 + TEC TEC MGP_AJ_T0060952.1 MGP_AJ_G0027193.1 mouse_genomes_project 3 54897598 54903781 - MGP_AJ_P0060952 Pfn2 protein_coding protein_coding MGP_AJ_T0060953.1 MGP_AJ_G0027193.1 mouse_genomes_project 3 54897608 54902850 - MGP_AJ_P0060953 Pfn2 protein_coding protein_coding MGP_AJ_T0060954.1 MGP_AJ_G0027193.1 mouse_genomes_project 3 54898811 54901581 - MGP_AJ_P0060954 Pfn2 protein_coding protein_coding MGP_AJ_T0060955.1 MGP_AJ_G0027193.1 mouse_genomes_project 3 54900363 54903254 - MGP_AJ_P0060955 Pfn2 protein_coding protein_coding MGP_AJ_T0014043.1 MGP_AJ_G0012138.1 mouse_genomes_project 3 48587126 48587439 - processed_pseudogene processed_pseudogene MGP_AJ_T0014017.1 MGP_AJ_G0012112.1 mouse_genomes_project 3 40457296 40458460 - processed_pseudogene processed_pseudogene MGP_AJ_T0063071.1 MGP_AJ_G0027692.1 mouse_genomes_project 3 104417160 104436388 - MGP_AJ_P0063071 Chil6 protein_coding protein_coding MGP_AJ_T0062966.1 MGP_AJ_G0027665.1 mouse_genomes_project 3 101962408 102159192 - MGP_AJ_P0062966 Magi3 protein_coding protein_coding MGP_AJ_T0062967.1 MGP_AJ_G0027665.1 mouse_genomes_project 3 101962774 102158921 - MGP_AJ_P0062967 Magi3 protein_coding protein_coding MGP_AJ_T0062968.1 MGP_AJ_G0027665.1 mouse_genomes_project 3 101965618 102159056 - MGP_AJ_P0062968 Magi3 protein_coding protein_coding MGP_AJ_T0062969.1 MGP_AJ_G0027665.1 mouse_genomes_project 3 102012366 102014171 - Magi3 protein_coding retained_intron MGP_AJ_T0063297.1 MGP_AJ_G0027747.1 mouse_genomes_project 3 106929953 106966927 - MGP_AJ_P0063297 Fndc7 protein_coding protein_coding MGP_AJ_T0063298.1 MGP_AJ_G0027747.1 mouse_genomes_project 3 106929958 106934881 - Fndc7 protein_coding processed_transcript MGP_AJ_T0063299.1 MGP_AJ_G0027747.1 mouse_genomes_project 3 106931598 106967229 - MGP_AJ_P0063299 Fndc7 protein_coding protein_coding MGP_AJ_T0063300.1 MGP_AJ_G0027747.1 mouse_genomes_project 3 106931615 106967036 - MGP_AJ_P0063300 Fndc7 protein_coding protein_coding MGP_AJ_T0063301.1 MGP_AJ_G0027747.1 mouse_genomes_project 3 106932363 106934877 - Fndc7 protein_coding processed_transcript MGP_AJ_T0063302.1 MGP_AJ_G0027747.1 mouse_genomes_project 3 106938989 106947558 - Fndc7 protein_coding processed_transcript MGP_AJ_T0063303.1 MGP_AJ_G0027747.1 mouse_genomes_project 3 106946299 106958771 - Fndc7 protein_coding retained_intron MGP_AJ_T0014375.1 MGP_AJ_G0012470.1 mouse_genomes_project 3 150345377 150346047 + processed_pseudogene processed_pseudogene MGP_AJ_T0061211.1 MGP_AJ_G0027258.1 mouse_genomes_project 3 66766492 66791328 - MGP_AJ_P0061211 B3galnt1 protein_coding protein_coding MGP_AJ_T0063023.1 MGP_AJ_G0027678.1 mouse_genomes_project 3 103626135 103635403 - MGP_AJ_P0063023 Ddx20 protein_coding protein_coding MGP_AJ_T0063024.1 MGP_AJ_G0027678.1 mouse_genomes_project 3 103627485 103635281 - MGP_AJ_P0063024 Ddx20 protein_coding nonsense_mediated_decay MGP_AJ_T0063025.1 MGP_AJ_G0027678.1 mouse_genomes_project 3 103629354 103635273 - Ddx20 protein_coding retained_intron MGP_AJ_T0063391.1 MGP_AJ_G0027766.1 mouse_genomes_project 3 114264953 114268809 - MGP_AJ_P0063391 Gpr88 protein_coding protein_coding MGP_AJ_T0063392.1 MGP_AJ_G0027766.1 mouse_genomes_project 3 114267862 114268395 - MGP_AJ_P0063392 Gpr88 protein_coding protein_coding MGP_AJ_T0063393.1 MGP_AJ_G0027766.1 mouse_genomes_project 3 114267975 114268769 - Gpr88 protein_coding processed_transcript MGP_AJ_T0004356.1 MGP_AJ_G0003803.1 mouse_genomes_project 3 114660441 114660980 + Gm42457 antisense antisense MGP_AJ_T0063182.1 MGP_AJ_G0027722.1 mouse_genomes_project 3 106064962 106071087 - MGP_AJ_P0063182 Gstm1 protein_coding protein_coding MGP_AJ_T0063183.1 MGP_AJ_G0027722.1 mouse_genomes_project 3 106064968 106066024 - Gstm1 protein_coding processed_transcript MGP_AJ_T0063184.1 MGP_AJ_G0027722.1 mouse_genomes_project 3 106065098 106069368 - MGP_AJ_P0063184 Gstm1 protein_coding protein_coding MGP_AJ_T0063185.1 MGP_AJ_G0027722.1 mouse_genomes_project 3 106065334 106070920 - MGP_AJ_P0063185 Gstm1 protein_coding protein_coding MGP_AJ_T0014000.1 MGP_AJ_G0012095.1 mouse_genomes_project 3 34706374 34706695 - processed_pseudogene processed_pseudogene MGP_AJ_T0062108.1 MGP_AJ_G0027433.1 mouse_genomes_project 3 87808662 87819669 + MGP_AJ_P0062108 S100a13 protein_coding protein_coding MGP_AJ_T0062228.1 MGP_AJ_G0027508.1 mouse_genomes_project 3 92096781 92116828 + MGP_AJ_P0062228 Tdrkh protein_coding protein_coding MGP_AJ_T0062229.1 MGP_AJ_G0027508.1 mouse_genomes_project 3 92096808 92109130 + MGP_AJ_P0062229 Tdrkh protein_coding nonsense_mediated_decay MGP_AJ_T0062230.1 MGP_AJ_G0027508.1 mouse_genomes_project 3 92106294 92115088 + MGP_AJ_P0062230 Tdrkh protein_coding protein_coding MGP_AJ_T0062231.1 MGP_AJ_G0027508.1 mouse_genomes_project 3 92106294 92115075 + MGP_AJ_P0062231 Tdrkh protein_coding protein_coding MGP_AJ_T0004372.1 MGP_AJ_G0003815.1 mouse_genomes_project 3 127596881 127605930 - antisense antisense MGP_AJ_T0004373.1 MGP_AJ_G0003815.1 mouse_genomes_project 3 127597046 127606209 - antisense antisense MGP_AJ_T0004397.1 MGP_AJ_G0003832.1 mouse_genomes_project 3 140787135 140788155 - Gm15540 antisense antisense MGP_AJ_T0014110.1 MGP_AJ_G0012205.1 mouse_genomes_project 3 67155013 67155892 - processed_pseudogene processed_pseudogene MGP_AJ_T0063833.1 MGP_AJ_G0027845.1 mouse_genomes_project 3 129357798 129374283 - MGP_AJ_P0063833 Cyp2u1 protein_coding protein_coding MGP_AJ_T0063834.1 MGP_AJ_G0027845.1 mouse_genomes_project 3 129364346 129374259 - MGP_AJ_P0063834 Cyp2u1 protein_coding protein_coding MGP_AJ_T0063835.1 MGP_AJ_G0027845.1 mouse_genomes_project 3 129365482 129374286 - Cyp2u1 protein_coding processed_transcript MGP_AJ_T0010496.1 MGP_AJ_G0008618.1 mouse_genomes_project 3 17355551 17355621 - Mir7007 miRNA miRNA MGP_AJ_T0013906.1 MGP_AJ_G0012001.1 mouse_genomes_project 3 4984672 4985257 + processed_pseudogene processed_pseudogene MGP_AJ_T0062851.1 MGP_AJ_G0027646.1 mouse_genomes_project 3 100922601 100937317 + MGP_AJ_P0062851 Sike1 protein_coding protein_coding MGP_AJ_T0062852.1 MGP_AJ_G0027646.1 mouse_genomes_project 3 100922623 100926145 + Sike1 protein_coding retained_intron MGP_AJ_T0062853.1 MGP_AJ_G0027646.1 mouse_genomes_project 3 100922688 100931052 + MGP_AJ_P0062853 Sike1 protein_coding protein_coding MGP_AJ_T0062854.1 MGP_AJ_G0027646.1 mouse_genomes_project 3 100922942 100924245 + Sike1 protein_coding retained_intron MGP_AJ_T0062855.1 MGP_AJ_G0027646.1 mouse_genomes_project 3 100923069 100930694 + MGP_AJ_P0062855 Sike1 protein_coding nonsense_mediated_decay MGP_AJ_T0062856.1 MGP_AJ_G0027646.1 mouse_genomes_project 3 100923621 100926132 + Sike1 protein_coding retained_intron MGP_AJ_T0010551.1 MGP_AJ_G0008673.1 mouse_genomes_project 3 125587470 125587536 + Mir302d miRNA miRNA MGP_AJ_T0017958.1 MGP_AJ_G0015484.1 mouse_genomes_project 3 79743507 79746390 - Gm29999 processed_transcript retained_intron MGP_AJ_T0017959.1 MGP_AJ_G0015484.1 mouse_genomes_project 3 79743653 79749378 - Gm29999 processed_transcript lincRNA MGP_AJ_T0001156.1 MGP_AJ_G0001082.1 mouse_genomes_project 3 34854882 34858010 + TEC TEC MGP_AJ_T0007744.1 MGP_AJ_G0006331.1 mouse_genomes_project 3 141378950 141380629 + Gm43613 lincRNA lincRNA MGP_AJ_T0014379.1 MGP_AJ_G0012474.1 mouse_genomes_project 3 152353138 152353589 + processed_pseudogene processed_pseudogene MGP_AJ_T0060737.1 MGP_AJ_G0027151.1 mouse_genomes_project 3 46781443 46795526 - MGP_AJ_P0060737 Pcdh18 protein_coding protein_coding MGP_AJ_T0060738.1 MGP_AJ_G0027151.1 mouse_genomes_project 3 46781445 46795495 - MGP_AJ_P0060738 Pcdh18 protein_coding protein_coding MGP_AJ_T0060739.1 MGP_AJ_G0027151.1 mouse_genomes_project 3 46783425 46795535 - Pcdh18 protein_coding processed_transcript MGP_AJ_T0060740.1 MGP_AJ_G0027151.1 mouse_genomes_project 3 46790626 46793675 - MGP_AJ_P0060740 Pcdh18 protein_coding protein_coding MGP_AJ_T0060741.1 MGP_AJ_G0027151.1 mouse_genomes_project 3 46793036 46795493 - Pcdh18 protein_coding processed_transcript MGP_AJ_T0060484.1 MGP_AJ_G0027109.1 mouse_genomes_project 3 31215645 31240893 - MGP_AJ_P0060484 Dnajc19 protein_coding protein_coding MGP_AJ_T0060485.1 MGP_AJ_G0027109.1 mouse_genomes_project 3 31236859 31240902 - MGP_AJ_P0060485 Dnajc19 protein_coding protein_coding MGP_AJ_T0060486.1 MGP_AJ_G0027109.1 mouse_genomes_project 3 31236904 31240891 - MGP_AJ_P0060486 Dnajc19 protein_coding protein_coding MGP_AJ_T0060487.1 MGP_AJ_G0027109.1 mouse_genomes_project 3 31236934 31239761 - Dnajc19 protein_coding retained_intron MGP_AJ_T0060488.1 MGP_AJ_G0027109.1 mouse_genomes_project 3 31237014 31240843 - MGP_AJ_P0060488 Dnajc19 protein_coding protein_coding MGP_AJ_T0014273.1 MGP_AJ_G0012368.1 mouse_genomes_project 3 114867025 114867410 + processed_pseudogene processed_pseudogene MGP_AJ_T0007449.1 MGP_AJ_G0006106.1 mouse_genomes_project 3 5011641 5043435 - 1700010I02Rik lincRNA lincRNA MGP_AJ_T0007450.1 MGP_AJ_G0006106.1 mouse_genomes_project 3 5011641 5043442 - 1700010I02Rik lincRNA lincRNA MGP_AJ_T0007669.1 MGP_AJ_G0006270.1 mouse_genomes_project 3 106419248 106419954 + Gm12525 lincRNA lincRNA MGP_AJ_T0063968.1 MGP_AJ_G0027869.1 mouse_genomes_project 3 134105569 134377785 - MGP_AJ_P0063968 Bank1 protein_coding protein_coding MGP_AJ_T0063969.1 MGP_AJ_G0027869.1 mouse_genomes_project 3 134105569 134377765 - MGP_AJ_P0063969 Bank1 protein_coding protein_coding MGP_AJ_T0063970.1 MGP_AJ_G0027869.1 mouse_genomes_project 3 134105655 134377744 - MGP_AJ_P0063970 Bank1 protein_coding protein_coding MGP_AJ_T0063971.1 MGP_AJ_G0027869.1 mouse_genomes_project 3 134106128 134106923 - Bank1 protein_coding retained_intron MGP_AJ_T0063972.1 MGP_AJ_G0027869.1 mouse_genomes_project 3 134106143 134108310 - Bank1 protein_coding retained_intron MGP_AJ_T0063973.1 MGP_AJ_G0027869.1 mouse_genomes_project 3 134261045 134298785 - Bank1 protein_coding retained_intron MGP_AJ_T0014117.1 MGP_AJ_G0012212.1 mouse_genomes_project 3 69052928 69053891 + processed_pseudogene processed_pseudogene MGP_AJ_T0001182.1 MGP_AJ_G0001108.1 mouse_genomes_project 3 47929609 47932260 - TEC TEC MGP_AJ_T0063711.1 MGP_AJ_G0027821.1 mouse_genomes_project 3 125683066 125685562 + MGP_AJ_P0063711 Neurog2 protein_coding protein_coding MGP_AJ_T0007756.1 MGP_AJ_G0006342.1 mouse_genomes_project 3 141954109 141955014 + Gm42708 lincRNA lincRNA MGP_AJ_T0060050.1 MGP_AJ_G0027016.1 mouse_genomes_project 3 5598778 5652253 + MGP_AJ_P0060050 Stmn2 protein_coding protein_coding MGP_AJ_T0060051.1 MGP_AJ_G0027016.1 mouse_genomes_project 3 5598933 5639505 + Stmn2 protein_coding retained_intron MGP_AJ_T0060052.1 MGP_AJ_G0027016.1 mouse_genomes_project 3 5599004 5631962 + Stmn2 protein_coding retained_intron MGP_AJ_T0060053.1 MGP_AJ_G0027016.1 mouse_genomes_project 3 5650911 5652222 + Stmn2 protein_coding processed_transcript MGP_AJ_T0101119.1 MGP_AJ_G0039085.1 mouse_genomes_project 3 46525051 46525179 + Gm22480 snoRNA snoRNA MGP_AJ_T0001327.1 MGP_AJ_G0001251.1 mouse_genomes_project 3 125006355 125007992 - TEC TEC MGP_AJ_T0098982.1 MGP_AJ_G0036959.1 mouse_genomes_project 3 101269970 101272212 + Gm43061 sense_intronic sense_intronic MGP_AJ_T0007562.1 MGP_AJ_G0006188.1 mouse_genomes_project 3 55198553 55220630 - 1700007F19Rik lincRNA lincRNA MGP_AJ_T0098996.1 MGP_AJ_G0036973.1 mouse_genomes_project 3 102108008 102111285 - Gm43259 sense_intronic sense_intronic MGP_AJ_T0062577.1 MGP_AJ_G0027566.1 mouse_genomes_project 3 93948267 93963210 + MGP_AJ_P0062577 Sv2a protein_coding protein_coding MGP_AJ_T0062578.1 MGP_AJ_G0027566.1 mouse_genomes_project 3 93953784 93955546 + Sv2a protein_coding retained_intron MGP_AJ_T0062579.1 MGP_AJ_G0027566.1 mouse_genomes_project 3 93960235 93963207 + Sv2a protein_coding processed_transcript MGP_AJ_T0007706.1 MGP_AJ_G0006298.1 mouse_genomes_project 3 128830589 128832377 + Gm43522 lincRNA lincRNA MGP_AJ_T0007707.1 MGP_AJ_G0006298.1 mouse_genomes_project 3 128831514 128833436 + Gm43522 lincRNA lincRNA MGP_AJ_T0099869.1 MGP_AJ_G0037835.1 mouse_genomes_project 3 108604893 108604998 - Gm26076 snRNA snRNA MGP_AJ_T0001167.1 MGP_AJ_G0001093.1 mouse_genomes_project 3 39220310 39224078 + TEC TEC MGP_AJ_T0061354.1 MGP_AJ_G0027292.1 mouse_genomes_project 3 79788821 79789814 + MGP_AJ_P0061354 protein_coding protein_coding MGP_AJ_T0004394.1 MGP_AJ_G0003829.1 mouse_genomes_project 3 136323475 136349946 - Gm16559 antisense antisense MGP_AJ_T0018019.1 MGP_AJ_G0015507.1 mouse_genomes_project 3 152556889 152560323 + AI606473 processed_transcript lincRNA MGP_AJ_T0018020.1 MGP_AJ_G0015507.1 mouse_genomes_project 3 152558073 152558871 + AI606473 processed_transcript retained_intron MGP_AJ_T0007532.1 MGP_AJ_G0006167.1 mouse_genomes_project 3 38523795 38528278 - Platr4 lincRNA lincRNA MGP_AJ_T0007533.1 MGP_AJ_G0006167.1 mouse_genomes_project 3 38527480 38532992 - Platr4 lincRNA lincRNA MGP_AJ_T0007534.1 MGP_AJ_G0006167.1 mouse_genomes_project 3 38528605 38532994 - Platr4 lincRNA lincRNA MGP_AJ_T0102564.1 MGP_AJ_G0040306.1 mouse_genomes_project 3 104144476 104145820 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0062592.1 MGP_AJ_G0027577.1 mouse_genomes_project 3 94035287 94035668 + MGP_AJ_P0062592 Hist2h2bb protein_coding protein_coding MGP_AJ_T0061393.1 MGP_AJ_G0027305.1 mouse_genomes_project 3 81285054 81286084 + MGP_AJ_P0061393 Gm6525 protein_coding protein_coding MGP_AJ_T0098960.1 MGP_AJ_G0036937.1 mouse_genomes_project 3 87326348 87327514 + Gm16540 sense_intronic sense_intronic MGP_AJ_T0004403.1 MGP_AJ_G0003837.1 mouse_genomes_project 3 147120376 147135267 + Gm43573 antisense antisense MGP_AJ_T0060469.1 MGP_AJ_G0027107.1 mouse_genomes_project 3 30976005 31007771 - MGP_AJ_P0060469 Ccdc39 protein_coding protein_coding MGP_AJ_T0060470.1 MGP_AJ_G0027107.1 mouse_genomes_project 3 30976694 30978192 - Ccdc39 protein_coding retained_intron MGP_AJ_T0060471.1 MGP_AJ_G0027107.1 mouse_genomes_project 3 30982286 31007771 - Ccdc39 protein_coding retained_intron MGP_AJ_T0060472.1 MGP_AJ_G0027107.1 mouse_genomes_project 3 30983834 31007535 - Ccdc39 protein_coding retained_intron MGP_AJ_T0060473.1 MGP_AJ_G0027107.1 mouse_genomes_project 3 30987614 30989568 - Ccdc39 protein_coding retained_intron MGP_AJ_T0060474.1 MGP_AJ_G0027107.1 mouse_genomes_project 3 31001461 31007780 - Ccdc39 protein_coding retained_intron MGP_AJ_T0062216.1 MGP_AJ_G0027503.1 mouse_genomes_project 3 91989733 92014664 + MGP_AJ_P0062216 Them4 protein_coding protein_coding MGP_AJ_T0062217.1 MGP_AJ_G0027503.1 mouse_genomes_project 3 91989774 91997811 + Them4 protein_coding retained_intron MGP_AJ_T0062218.1 MGP_AJ_G0027503.1 mouse_genomes_project 3 91989780 92005680 + Them4 protein_coding retained_intron MGP_AJ_T0004224.1 MGP_AJ_G0003715.1 mouse_genomes_project 3 33128286 33141512 + Mccc1os antisense antisense MGP_AJ_T0004225.1 MGP_AJ_G0003715.1 mouse_genomes_project 3 33128366 33143438 + Mccc1os antisense antisense MGP_AJ_T0004226.1 MGP_AJ_G0003715.1 mouse_genomes_project 3 33128888 33159811 + Mccc1os antisense antisense MGP_AJ_T0063032.1 MGP_AJ_G0027681.1 mouse_genomes_project 3 103819959 103857631 + MGP_AJ_P0063032 Adora3 protein_coding protein_coding MGP_AJ_T0063037.1 MGP_AJ_G0027681.1 mouse_genomes_project 3 103853687 103858204 + MGP_AJ_P0063037 Adora3 protein_coding protein_coding MGP_AJ_T0063039.1 MGP_AJ_G0027681.1 mouse_genomes_project 3 103853961 103855634 + Adora3 protein_coding retained_intron MGP_AJ_T0001145.1 MGP_AJ_G0001071.1 mouse_genomes_project 3 31814084 31814715 - TEC TEC MGP_AJ_T0061272.1 MGP_AJ_G0027273.1 mouse_genomes_project 3 76447632 76543244 + MGP_AJ_P0061272 protein_coding protein_coding MGP_AJ_T0061273.1 MGP_AJ_G0027273.1 mouse_genomes_project 3 76456399 76575977 + MGP_AJ_P0061273 protein_coding protein_coding MGP_AJ_T0061274.1 MGP_AJ_G0027273.1 mouse_genomes_project 3 76456402 76544502 + MGP_AJ_P0061274 protein_coding protein_coding MGP_AJ_T0004221.1 MGP_AJ_G0003714.1 mouse_genomes_project 3 33061151 33118740 + Gm15952 antisense antisense MGP_AJ_T0004222.1 MGP_AJ_G0003714.1 mouse_genomes_project 3 33061151 33070816 + Gm15952 antisense antisense MGP_AJ_T0004223.1 MGP_AJ_G0003714.1 mouse_genomes_project 3 33061163 33066148 + Gm15952 antisense antisense MGP_AJ_T0017971.1 MGP_AJ_G0015489.1 mouse_genomes_project 3 94020133 94021792 - Gm20627 processed_transcript lincRNA MGP_AJ_T0017972.1 MGP_AJ_G0015489.1 mouse_genomes_project 3 94020135 94020984 - Gm20627 processed_transcript retained_intron MGP_AJ_T0010533.1 MGP_AJ_G0008655.1 mouse_genomes_project 3 92741156 92741228 + Mir7013 miRNA miRNA MGP_AJ_T0062539.1 MGP_AJ_G0027559.1 mouse_genomes_project 3 93652431 93659357 - MGP_AJ_P0062539 Car14 protein_coding protein_coding MGP_AJ_T0062540.1 MGP_AJ_G0027559.1 mouse_genomes_project 3 93654403 93659351 - MGP_AJ_P0062540 Car14 protein_coding protein_coding MGP_AJ_T0062541.1 MGP_AJ_G0027559.1 mouse_genomes_project 3 93656175 93659350 - Car14 protein_coding retained_intron MGP_AJ_T0062542.1 MGP_AJ_G0027559.1 mouse_genomes_project 3 93656556 93658414 - Car14 protein_coding retained_intron MGP_AJ_T0014031.1 MGP_AJ_G0012126.1 mouse_genomes_project 3 45096880 45097630 - processed_pseudogene processed_pseudogene MGP_AJ_T0064559.1 MGP_AJ_G0027975.1 mouse_genomes_project 3 156331070 156611395 - MGP_AJ_P0064559 Lrrc7 protein_coding protein_coding MGP_AJ_T0064560.1 MGP_AJ_G0027975.1 mouse_genomes_project 3 156331074 156818783 - MGP_AJ_P0064560 Lrrc7 protein_coding protein_coding MGP_AJ_T0064561.1 MGP_AJ_G0027975.1 mouse_genomes_project 3 156332618 156611415 - MGP_AJ_P0064561 Lrrc7 protein_coding protein_coding MGP_AJ_T0064562.1 MGP_AJ_G0027975.1 mouse_genomes_project 3 156332618 156818783 - MGP_AJ_P0064562 Lrrc7 protein_coding protein_coding MGP_AJ_T0064563.1 MGP_AJ_G0027975.1 mouse_genomes_project 3 156671664 156817907 - Lrrc7 protein_coding retained_intron MGP_AJ_T0064564.1 MGP_AJ_G0027975.1 mouse_genomes_project 3 156706592 156817898 - Lrrc7 protein_coding retained_intron MGP_AJ_T0099018.1 MGP_AJ_G0036995.1 mouse_genomes_project 3 151672389 151683493 - 1700015C17Rik sense_intronic sense_intronic MGP_AJ_T0004415.1 MGP_AJ_G0003847.1 mouse_genomes_project 3 156174258 156175853 + 1810013D15Rik antisense antisense MGP_AJ_T0004416.1 MGP_AJ_G0003847.1 mouse_genomes_project 3 156174520 156187294 + 1810013D15Rik antisense antisense MGP_AJ_T0014354.1 MGP_AJ_G0012449.1 mouse_genomes_project 3 138891957 138892321 - processed_pseudogene processed_pseudogene MGP_AJ_T0061949.1 MGP_AJ_G0027409.1 mouse_genomes_project 3 87001681 87020250 - MGP_AJ_P0061949 Chrnb2 protein_coding protein_coding MGP_AJ_T0061950.1 MGP_AJ_G0027409.1 mouse_genomes_project 3 87007938 87019043 - Chrnb2 protein_coding processed_transcript MGP_AJ_T0061951.1 MGP_AJ_G0027409.1 mouse_genomes_project 3 87007938 87020274 - MGP_AJ_P0061951 Chrnb2 protein_coding protein_coding MGP_AJ_T0001126.1 MGP_AJ_G0001052.1 mouse_genomes_project 3 26309185 26311285 + TEC TEC MGP_AJ_T0001253.1 MGP_AJ_G0001177.1 mouse_genomes_project 3 81173216 81178495 - TEC TEC MGP_AJ_T0063436.1 MGP_AJ_G0027775.1 mouse_genomes_project 3 114699201 114759057 - MGP_AJ_P0063436 Slc35a3 protein_coding protein_coding MGP_AJ_T0063437.1 MGP_AJ_G0027775.1 mouse_genomes_project 3 114702890 114741454 - MGP_AJ_P0063437 Slc35a3 protein_coding protein_coding MGP_AJ_T0063438.1 MGP_AJ_G0027775.1 mouse_genomes_project 3 114703406 114706169 - Slc35a3 protein_coding processed_transcript MGP_AJ_T0063439.1 MGP_AJ_G0027775.1 mouse_genomes_project 3 114710836 114741065 - MGP_AJ_P0063439 Slc35a3 protein_coding protein_coding MGP_AJ_T0063440.1 MGP_AJ_G0027775.1 mouse_genomes_project 3 114710971 114741435 - MGP_AJ_P0063440 Slc35a3 protein_coding protein_coding MGP_AJ_T0063441.1 MGP_AJ_G0027775.1 mouse_genomes_project 3 114719890 114741480 - Slc35a3 protein_coding retained_intron MGP_AJ_T0063442.1 MGP_AJ_G0027775.1 mouse_genomes_project 3 114723683 114742047 - MGP_AJ_P0063442 Slc35a3 protein_coding protein_coding MGP_AJ_T0004350.1 MGP_AJ_G0003797.1 mouse_genomes_project 3 106781941 106785675 + Gm27244 antisense antisense MGP_AJ_T0011546.1 MGP_AJ_G0009668.1 mouse_genomes_project 3 94193655 94194078 - Terc misc_RNA misc_RNA MGP_AJ_T0061783.1 MGP_AJ_G0027381.1 mouse_genomes_project 3 86384482 86398567 - MGP_AJ_P0061783 Hcn3 protein_coding protein_coding MGP_AJ_T0061784.1 MGP_AJ_G0027381.1 mouse_genomes_project 3 86387114 86389616 - Hcn3 protein_coding retained_intron MGP_AJ_T0061785.1 MGP_AJ_G0027381.1 mouse_genomes_project 3 86387231 86389598 - Hcn3 protein_coding retained_intron MGP_AJ_T0061786.1 MGP_AJ_G0027381.1 mouse_genomes_project 3 86389864 86398351 - Hcn3 protein_coding processed_transcript MGP_AJ_T0102562.1 MGP_AJ_G0040304.1 mouse_genomes_project 3 96693643 96695700 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0007510.1 MGP_AJ_G0006151.1 mouse_genomes_project 3 33645435 33652769 - Gm11548 lincRNA lincRNA MGP_AJ_T0001316.1 MGP_AJ_G0001240.1 mouse_genomes_project 3 122430970 122431216 - TEC TEC MGP_AJ_T0061151.1 MGP_AJ_G0027243.1 mouse_genomes_project 3 64650268 64656197 - MGP_AJ_P0061151 Lxn protein_coding protein_coding MGP_AJ_T0061152.1 MGP_AJ_G0027243.1 mouse_genomes_project 3 64650271 64653905 - Lxn protein_coding retained_intron MGP_AJ_T0061153.1 MGP_AJ_G0027243.1 mouse_genomes_project 3 64653331 64656053 - Lxn protein_coding retained_intron MGP_AJ_T0060386.1 MGP_AJ_G0027093.1 mouse_genomes_project 3 28352999 28461566 - MGP_AJ_P0060386 Slc7a14 protein_coding protein_coding MGP_AJ_T0060387.1 MGP_AJ_G0027093.1 mouse_genomes_project 3 28373400 28409069 - MGP_AJ_P0060387 Slc7a14 protein_coding protein_coding MGP_AJ_T0062044.1 MGP_AJ_G0027422.1 mouse_genomes_project 3 87518795 87525560 - MGP_AJ_P0062044 Creb3l4 protein_coding protein_coding MGP_AJ_T0062045.1 MGP_AJ_G0027422.1 mouse_genomes_project 3 87518865 87525191 - MGP_AJ_P0062045 Creb3l4 protein_coding protein_coding MGP_AJ_T0098957.1 MGP_AJ_G0036935.1 mouse_genomes_project 3 76786489 76790008 - Gm26984 sense_intronic sense_intronic MGP_AJ_T0007470.1 MGP_AJ_G0006120.1 mouse_genomes_project 3 14901346 14911458 + Mir124-2hg lincRNA lincRNA MGP_AJ_T0007471.1 MGP_AJ_G0006120.1 mouse_genomes_project 3 14901382 14910939 + Mir124-2hg lincRNA lincRNA MGP_AJ_T0007472.1 MGP_AJ_G0006120.1 mouse_genomes_project 3 14905339 14906825 + Mir124-2hg lincRNA lincRNA MGP_AJ_T0007473.1 MGP_AJ_G0006120.1 mouse_genomes_project 3 14905347 14910995 + Mir124-2hg lincRNA lincRNA MGP_AJ_T0007474.1 MGP_AJ_G0006120.1 mouse_genomes_project 3 14905364 14910908 + Mir124-2hg lincRNA lincRNA MGP_AJ_T0007475.1 MGP_AJ_G0006120.1 mouse_genomes_project 3 14906315 14920400 + Mir124-2hg lincRNA lincRNA MGP_AJ_T0007476.1 MGP_AJ_G0006120.1 mouse_genomes_project 3 14907163 14910995 + Mir124-2hg lincRNA lincRNA MGP_AJ_T0013985.1 MGP_AJ_G0012080.1 mouse_genomes_project 3 32655964 32656883 - processed_pseudogene processed_pseudogene MGP_AJ_T0007768.1 MGP_AJ_G0006352.1 mouse_genomes_project 3 145747353 145762679 - Gm36888 lincRNA lincRNA MGP_AJ_T0060797.1 MGP_AJ_G0027162.1 mouse_genomes_project 3 49294625 49376341 + MGP_AJ_P0060797 Foxo1 protein_coding protein_coding MGP_AJ_T0064200.1 MGP_AJ_G0027918.1 mouse_genomes_project 3 143405884 143674062 + MGP_AJ_P0064200 Col24a1 protein_coding protein_coding MGP_AJ_T0064201.1 MGP_AJ_G0027918.1 mouse_genomes_project 3 143405939 143425852 + MGP_AJ_P0064201 Col24a1 protein_coding protein_coding MGP_AJ_T0064202.1 MGP_AJ_G0027918.1 mouse_genomes_project 3 143636676 143660796 + Col24a1 protein_coding processed_transcript MGP_AJ_T0064203.1 MGP_AJ_G0027918.1 mouse_genomes_project 3 143667026 143674057 + Col24a1 protein_coding retained_intron MGP_AJ_T0062524.1 MGP_AJ_G0027556.1 mouse_genomes_project 3 93632055 93635612 - MGP_AJ_P0062524 Ciart protein_coding protein_coding MGP_AJ_T0062525.1 MGP_AJ_G0027556.1 mouse_genomes_project 3 93632055 93635638 - MGP_AJ_P0062525 Ciart protein_coding protein_coding MGP_AJ_T0062526.1 MGP_AJ_G0027556.1 mouse_genomes_project 3 93632205 93635658 - MGP_AJ_P0062526 Ciart protein_coding protein_coding MGP_AJ_T0062527.1 MGP_AJ_G0027556.1 mouse_genomes_project 3 93632911 93634653 - MGP_AJ_P0062527 Ciart protein_coding protein_coding MGP_AJ_T0062528.1 MGP_AJ_G0027556.1 mouse_genomes_project 3 93633858 93635610 - MGP_AJ_P0062528 Ciart protein_coding protein_coding MGP_AJ_T0062529.1 MGP_AJ_G0027556.1 mouse_genomes_project 3 93634079 93635481 - MGP_AJ_P0062529 Ciart protein_coding protein_coding MGP_AJ_T0062465.1 MGP_AJ_G0027548.1 mouse_genomes_project 3 93377228 93378226 + Ensa protein_coding TEC MGP_AJ_T0062466.1 MGP_AJ_G0027548.1 mouse_genomes_project 3 93377246 93384338 + MGP_AJ_P0062466 Ensa protein_coding protein_coding MGP_AJ_T0062467.1 MGP_AJ_G0027548.1 mouse_genomes_project 3 93377255 93384338 + MGP_AJ_P0062467 Ensa protein_coding protein_coding MGP_AJ_T0062468.1 MGP_AJ_G0027548.1 mouse_genomes_project 3 93377261 93379770 + Ensa protein_coding retained_intron MGP_AJ_T0007647.1 MGP_AJ_G0006253.1 mouse_genomes_project 3 100179539 100180135 + Gm43241 lincRNA lincRNA MGP_AJ_T0007749.1 MGP_AJ_G0006336.1 mouse_genomes_project 3 141661796 141683170 + Gm42703 lincRNA lincRNA MGP_AJ_T0061645.1 MGP_AJ_G0027361.1 mouse_genomes_project 3 85610400 85629271 - MGP_AJ_P0061645 Sema4a protein_coding protein_coding MGP_AJ_T0061646.1 MGP_AJ_G0027361.1 mouse_genomes_project 3 85610403 85615578 - Sema4a protein_coding retained_intron MGP_AJ_T0061647.1 MGP_AJ_G0027361.1 mouse_genomes_project 3 85610403 85623069 - Sema4a protein_coding retained_intron MGP_AJ_T0061648.1 MGP_AJ_G0027361.1 mouse_genomes_project 3 85610403 85624477 - Sema4a protein_coding retained_intron MGP_AJ_T0061649.1 MGP_AJ_G0027361.1 mouse_genomes_project 3 85624124 85625889 - MGP_AJ_P0061649 Sema4a protein_coding nonsense_mediated_decay MGP_AJ_T0061650.1 MGP_AJ_G0027361.1 mouse_genomes_project 3 85624262 85626224 - Sema4a protein_coding retained_intron MGP_AJ_T0061651.1 MGP_AJ_G0027361.1 mouse_genomes_project 3 85624473 85629768 - MGP_AJ_P0061651 Sema4a protein_coding nonsense_mediated_decay MGP_AJ_T0061652.1 MGP_AJ_G0027361.1 mouse_genomes_project 3 85624535 85633555 - MGP_AJ_P0061652 Sema4a protein_coding protein_coding MGP_AJ_T0061653.1 MGP_AJ_G0027361.1 mouse_genomes_project 3 85625006 85633484 - MGP_AJ_P0061653 Sema4a protein_coding nonsense_mediated_decay MGP_AJ_T0061654.1 MGP_AJ_G0027361.1 mouse_genomes_project 3 85625023 85633330 - MGP_AJ_P0061654 Sema4a protein_coding protein_coding MGP_AJ_T0061655.1 MGP_AJ_G0027361.1 mouse_genomes_project 3 85626481 85629759 - MGP_AJ_P0061655 Sema4a protein_coding protein_coding MGP_AJ_T0061656.1 MGP_AJ_G0027361.1 mouse_genomes_project 3 85627272 85629296 - Sema4a protein_coding retained_intron MGP_AJ_T0061657.1 MGP_AJ_G0027361.1 mouse_genomes_project 3 85627530 85630869 - MGP_AJ_P0061657 Sema4a protein_coding protein_coding MGP_AJ_T0061658.1 MGP_AJ_G0027361.1 mouse_genomes_project 3 85629218 85630890 - MGP_AJ_P0061658 Sema4a protein_coding protein_coding MGP_AJ_T0061659.1 MGP_AJ_G0027361.1 mouse_genomes_project 3 85630178 85630890 - Sema4a protein_coding processed_transcript MGP_AJ_T0063197.1 MGP_AJ_G0027725.1 mouse_genomes_project 3 106150385 106159047 + MGP_AJ_P0063197 Gnat2 protein_coding protein_coding MGP_AJ_T0063198.1 MGP_AJ_G0027725.1 mouse_genomes_project 3 106150476 106153981 + MGP_AJ_P0063198 Gnat2 protein_coding protein_coding MGP_AJ_T0063199.1 MGP_AJ_G0027725.1 mouse_genomes_project 3 106150734 106156032 + MGP_AJ_P0063199 Gnat2 protein_coding protein_coding MGP_AJ_T0063200.1 MGP_AJ_G0027725.1 mouse_genomes_project 3 106150788 106159045 + Gnat2 protein_coding retained_intron MGP_AJ_T0063201.1 MGP_AJ_G0027725.1 mouse_genomes_project 3 106152044 106156047 + MGP_AJ_P0063201 Gnat2 protein_coding protein_coding MGP_AJ_T0063202.1 MGP_AJ_G0027725.1 mouse_genomes_project 3 106154857 106158906 + Gnat2 protein_coding processed_transcript MGP_AJ_T0001287.1 MGP_AJ_G0001211.1 mouse_genomes_project 3 106597355 106599528 - TEC TEC MGP_AJ_T0064247.1 MGP_AJ_G0027930.1 mouse_genomes_project 3 144578640 144581781 + Ctbs protein_coding retained_intron MGP_AJ_T0064248.1 MGP_AJ_G0027930.1 mouse_genomes_project 3 144579315 144595894 + MGP_AJ_P0064248 Ctbs protein_coding protein_coding MGP_AJ_T0064249.1 MGP_AJ_G0027930.1 mouse_genomes_project 3 144579323 144586183 + MGP_AJ_P0064249 Ctbs protein_coding nonsense_mediated_decay MGP_AJ_T0064250.1 MGP_AJ_G0027930.1 mouse_genomes_project 3 144579338 144595816 + MGP_AJ_P0064250 Ctbs protein_coding protein_coding MGP_AJ_T0007638.1 MGP_AJ_G0006244.1 mouse_genomes_project 3 95694728 95703647 - Gm15999 lincRNA lincRNA MGP_AJ_T0064571.1 MGP_AJ_G0027978.1 mouse_genomes_project 3 158075502 158172970 + MGP_AJ_P0064571 Wls protein_coding protein_coding MGP_AJ_T0064572.1 MGP_AJ_G0027978.1 mouse_genomes_project 3 158075567 158175615 + MGP_AJ_P0064572 Wls protein_coding protein_coding MGP_AJ_T0064573.1 MGP_AJ_G0027978.1 mouse_genomes_project 3 158075569 158148432 + Wls protein_coding retained_intron MGP_AJ_T0064574.1 MGP_AJ_G0027978.1 mouse_genomes_project 3 158075569 158149407 + Wls protein_coding retained_intron MGP_AJ_T0064575.1 MGP_AJ_G0027978.1 mouse_genomes_project 3 158075569 158171850 + MGP_AJ_P0064575 Wls protein_coding nonsense_mediated_decay MGP_AJ_T0064576.1 MGP_AJ_G0027978.1 mouse_genomes_project 3 158075740 158109764 + Wls protein_coding retained_intron MGP_AJ_T0064577.1 MGP_AJ_G0027978.1 mouse_genomes_project 3 158084261 158087085 + Wls protein_coding retained_intron MGP_AJ_T0004317.1 MGP_AJ_G0003782.1 mouse_genomes_project 3 99353667 99354706 - Gm42538 antisense antisense MGP_AJ_T0004318.1 MGP_AJ_G0003782.1 mouse_genomes_project 3 99354326 99355997 - Gm42538 antisense antisense MGP_AJ_T0099819.1 MGP_AJ_G0037785.1 mouse_genomes_project 3 43000465 43000583 + Gm23337 snRNA snRNA MGP_AJ_T0001403.1 MGP_AJ_G0001326.1 mouse_genomes_project 3 156744220 156745245 + TEC TEC MGP_AJ_T0004360.1 MGP_AJ_G0003805.1 mouse_genomes_project 3 120470204 120485096 - Gm42835 antisense antisense MGP_AJ_T0062139.1 MGP_AJ_G0027444.1 mouse_genomes_project 3 87990506 87993590 - MGP_AJ_P0062139 S100a9 protein_coding protein_coding MGP_AJ_T0062140.1 MGP_AJ_G0027444.1 mouse_genomes_project 3 87990506 87993600 - MGP_AJ_P0062140 S100a9 protein_coding protein_coding MGP_AJ_T0004321.1 MGP_AJ_G0003785.1 mouse_genomes_project 3 100712274 100713847 - Gm42681 antisense antisense MGP_AJ_T0064316.1 MGP_AJ_G0027941.1 mouse_genomes_project 3 149605837 149715564 + MGP_AJ_P0064316 Adgrl4 protein_coding protein_coding MGP_AJ_T0064317.1 MGP_AJ_G0027941.1 mouse_genomes_project 3 149605879 149669701 + MGP_AJ_P0064317 Adgrl4 protein_coding protein_coding MGP_AJ_T0064318.1 MGP_AJ_G0027941.1 mouse_genomes_project 3 149606224 149667492 + Adgrl4 protein_coding processed_transcript MGP_AJ_T0064319.1 MGP_AJ_G0027941.1 mouse_genomes_project 3 149607046 149669672 + Adgrl4 protein_coding retained_intron MGP_AJ_T0064320.1 MGP_AJ_G0027941.1 mouse_genomes_project 3 149669575 149676967 + Adgrl4 protein_coding processed_transcript MGP_AJ_T0064321.1 MGP_AJ_G0027941.1 mouse_genomes_project 3 149687057 149691770 + Adgrl4 protein_coding processed_transcript MGP_AJ_T0007527.1 MGP_AJ_G0006164.1 mouse_genomes_project 3 38333506 38338033 - Gm16508 lincRNA lincRNA MGP_AJ_T0004361.1 MGP_AJ_G0003806.1 mouse_genomes_project 3 120519278 120552318 - Gm42836 antisense antisense MGP_AJ_T0007497.1 MGP_AJ_G0006139.1 mouse_genomes_project 3 31176917 31179092 - Gm43077 lincRNA lincRNA MGP_AJ_T0007448.1 MGP_AJ_G0006105.1 mouse_genomes_project 3 2647311 2649650 - 4930555M17Rik lincRNA lincRNA MGP_AJ_T0014254.1 MGP_AJ_G0012349.1 mouse_genomes_project 3 109142981 109143298 + processed_pseudogene processed_pseudogene MGP_AJ_T0014049.1 MGP_AJ_G0012144.1 mouse_genomes_project 3 50698241 50698707 - processed_pseudogene processed_pseudogene MGP_AJ_T0063990.1 MGP_AJ_G0027874.1 mouse_genomes_project 3 135912260 135914511 + MGP_AJ_P0063990 H2afz protein_coding protein_coding MGP_AJ_T0063991.1 MGP_AJ_G0027874.1 mouse_genomes_project 3 135912278 135913785 + H2afz protein_coding processed_transcript MGP_AJ_T0063992.1 MGP_AJ_G0027874.1 mouse_genomes_project 3 135912381 135914150 + MGP_AJ_P0063992 H2afz protein_coding nonsense_mediated_decay MGP_AJ_T0063993.1 MGP_AJ_G0027874.1 mouse_genomes_project 3 135912381 135914617 + MGP_AJ_P0063993 H2afz protein_coding protein_coding MGP_AJ_T0063994.1 MGP_AJ_G0027874.1 mouse_genomes_project 3 135912663 135914238 + H2afz protein_coding retained_intron MGP_AJ_T0063995.1 MGP_AJ_G0027874.1 mouse_genomes_project 3 135912815 135914089 + H2afz protein_coding retained_intron MGP_AJ_T0101799.1 MGP_AJ_G0039709.1 mouse_genomes_project 3 140941587 140942105 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0010542.1 MGP_AJ_G0008664.1 mouse_genomes_project 3 113989729 113989783 + Mir669n miRNA miRNA MGP_AJ_T0007605.1 MGP_AJ_G0006224.1 mouse_genomes_project 3 85348883 85354378 - AI849053 lincRNA lincRNA MGP_AJ_T0014235.1 MGP_AJ_G0012330.1 mouse_genomes_project 3 103990925 103991354 + processed_pseudogene processed_pseudogene MGP_AJ_T0063325.1 MGP_AJ_G0027754.1 mouse_genomes_project 3 107409771 107753062 + MGP_AJ_P0063325 Vav3 protein_coding protein_coding MGP_AJ_T0063326.1 MGP_AJ_G0027754.1 mouse_genomes_project 3 107409801 107636354 + Vav3 protein_coding retained_intron MGP_AJ_T0063327.1 MGP_AJ_G0027754.1 mouse_genomes_project 3 107410157 107753064 + MGP_AJ_P0063327 Vav3 protein_coding unknown_likely_coding MGP_AJ_T0063328.1 MGP_AJ_G0027754.1 mouse_genomes_project 3 107410224 107516571 + Vav3 protein_coding processed_transcript MGP_AJ_T0063329.1 MGP_AJ_G0027754.1 mouse_genomes_project 3 107567188 107576099 + Vav3 protein_coding processed_transcript MGP_AJ_T0063330.1 MGP_AJ_G0027754.1 mouse_genomes_project 3 107646739 107753058 + MGP_AJ_P0063330 Vav3 protein_coding protein_coding MGP_AJ_T0063331.1 MGP_AJ_G0027754.1 mouse_genomes_project 3 107716904 107750263 + Vav3 protein_coding processed_transcript MGP_AJ_T0014119.1 MGP_AJ_G0012214.1 mouse_genomes_project 3 69238141 69238646 - processed_pseudogene processed_pseudogene MGP_AJ_T0001172.1 MGP_AJ_G0001098.1 mouse_genomes_project 3 42462701 42465281 + TEC TEC MGP_AJ_T0001247.1 MGP_AJ_G0001171.1 mouse_genomes_project 3 73708067 73711632 + TEC TEC MGP_AJ_T0004388.1 MGP_AJ_G0003826.1 mouse_genomes_project 3 135923322 135925525 - Gm43087 antisense antisense MGP_AJ_T0062593.1 MGP_AJ_G0027578.1 mouse_genomes_project 3 94046915 94086092 - MGP_AJ_P0062593 Fcgr1 protein_coding protein_coding MGP_AJ_T0062594.1 MGP_AJ_G0027578.1 mouse_genomes_project 3 94048537 94056561 - MGP_AJ_P0062594 Fcgr1 protein_coding nonsense_mediated_decay MGP_AJ_T0013942.1 MGP_AJ_G0012037.1 mouse_genomes_project 3 14382469 14383808 + processed_pseudogene processed_pseudogene MGP_AJ_T0063227.1 MGP_AJ_G0027734.1 mouse_genomes_project 3 106422607 106438711 + MGP_AJ_P0063227 Mybphl protein_coding protein_coding MGP_AJ_T0013912.1 MGP_AJ_G0012007.1 mouse_genomes_project 3 6146579 6146901 - processed_pseudogene processed_pseudogene MGP_AJ_T0014128.1 MGP_AJ_G0012223.1 mouse_genomes_project 3 73989505 73989844 + processed_pseudogene processed_pseudogene MGP_AJ_T0062560.1 MGP_AJ_G0027563.1 mouse_genomes_project 3 93867663 93908434 + MGP_AJ_P0062560 Otud7b protein_coding protein_coding MGP_AJ_T0062561.1 MGP_AJ_G0027563.1 mouse_genomes_project 3 93867663 93911242 + MGP_AJ_P0062561 Otud7b protein_coding protein_coding MGP_AJ_T0062562.1 MGP_AJ_G0027563.1 mouse_genomes_project 3 93867663 93928050 + MGP_AJ_P0062562 Otud7b protein_coding protein_coding MGP_AJ_T0062563.1 MGP_AJ_G0027563.1 mouse_genomes_project 3 93867663 93928050 + MGP_AJ_P0062563 Otud7b protein_coding protein_coding MGP_AJ_T0062564.1 MGP_AJ_G0027563.1 mouse_genomes_project 3 93867682 93894390 + Otud7b protein_coding processed_transcript MGP_AJ_T0062565.1 MGP_AJ_G0027563.1 mouse_genomes_project 3 93867684 93908469 + Otud7b protein_coding processed_transcript MGP_AJ_T0062566.1 MGP_AJ_G0027563.1 mouse_genomes_project 3 93870212 93928050 + MGP_AJ_P0062566 Otud7b protein_coding protein_coding MGP_AJ_T0062567.1 MGP_AJ_G0027563.1 mouse_genomes_project 3 93917612 93919472 + Otud7b protein_coding processed_transcript MGP_AJ_T0101112.1 MGP_AJ_G0039078.1 mouse_genomes_project 3 31111557 31111689 - Gm23175 snoRNA snoRNA MGP_AJ_T0062074.1 MGP_AJ_G0027427.1 mouse_genomes_project 3 87680602 87723128 - MGP_AJ_P0062074 Ints3 protein_coding protein_coding MGP_AJ_T0062075.1 MGP_AJ_G0027427.1 mouse_genomes_project 3 87680610 87723354 - MGP_AJ_P0062075 Ints3 protein_coding protein_coding MGP_AJ_T0062076.1 MGP_AJ_G0027427.1 mouse_genomes_project 3 87681290 87692538 - Ints3 protein_coding retained_intron MGP_AJ_T0062077.1 MGP_AJ_G0027427.1 mouse_genomes_project 3 87681290 87723438 - MGP_AJ_P0062077 Ints3 protein_coding protein_coding MGP_AJ_T0062078.1 MGP_AJ_G0027427.1 mouse_genomes_project 3 87683581 87690099 - Ints3 protein_coding retained_intron MGP_AJ_T0062079.1 MGP_AJ_G0027427.1 mouse_genomes_project 3 87690428 87691998 - Ints3 protein_coding retained_intron MGP_AJ_T0062080.1 MGP_AJ_G0027427.1 mouse_genomes_project 3 87697262 87723447 - Ints3 protein_coding retained_intron MGP_AJ_T0014357.1 MGP_AJ_G0012452.1 mouse_genomes_project 3 140702797 140703859 - processed_pseudogene processed_pseudogene MGP_AJ_T0010508.1 MGP_AJ_G0008630.1 mouse_genomes_project 3 33620748 33620812 - Mir7009 miRNA miRNA MGP_AJ_T0014039.1 MGP_AJ_G0012134.1 mouse_genomes_project 3 47316721 47317310 + processed_pseudogene processed_pseudogene MGP_AJ_T0014305.1 MGP_AJ_G0012400.1 mouse_genomes_project 3 126336562 126336996 - processed_pseudogene processed_pseudogene MGP_AJ_T0004414.1 MGP_AJ_G0003846.1 mouse_genomes_project 3 155776356 155782932 - Gm43159 antisense antisense MGP_AJ_T0013898.1 MGP_AJ_G0011993.1 mouse_genomes_project 3 2021281 2022247 - processed_pseudogene processed_pseudogene MGP_AJ_T0061361.1 MGP_AJ_G0027296.1 mouse_genomes_project 3 80119667 80125846 + MGP_AJ_P0061361 Fga protein_coding protein_coding MGP_AJ_T0061362.1 MGP_AJ_G0027296.1 mouse_genomes_project 3 80119806 80127208 + MGP_AJ_P0061362 Fga protein_coding protein_coding MGP_AJ_T0063106.1 MGP_AJ_G0027697.1 mouse_genomes_project 3 104796014 104826439 - MGP_AJ_P0063106 Cd53 protein_coding protein_coding MGP_AJ_T0061229.1 MGP_AJ_G0027264.1 mouse_genomes_project 3 70822778 70897843 - MGP_AJ_P0061229 Bche protein_coding protein_coding MGP_AJ_T0061230.1 MGP_AJ_G0027264.1 mouse_genomes_project 3 70836397 70897670 - Bche protein_coding retained_intron MGP_AJ_T0061231.1 MGP_AJ_G0027264.1 mouse_genomes_project 3 70890994 70897695 - MGP_AJ_P0061231 Bche protein_coding protein_coding MGP_AJ_T0061232.1 MGP_AJ_G0027264.1 mouse_genomes_project 3 70893479 70897695 - Bche protein_coding processed_transcript MGP_AJ_T0007648.1 MGP_AJ_G0006254.1 mouse_genomes_project 3 100192279 100370271 + A230001M10Rik lincRNA lincRNA MGP_AJ_T0007649.1 MGP_AJ_G0006254.1 mouse_genomes_project 3 100192396 100219250 + A230001M10Rik lincRNA lincRNA MGP_AJ_T0007650.1 MGP_AJ_G0006254.1 mouse_genomes_project 3 100192712 100218455 + A230001M10Rik lincRNA lincRNA MGP_AJ_T0001328.1 MGP_AJ_G0001252.1 mouse_genomes_project 3 125018884 125019770 - TEC TEC MGP_AJ_T0061222.1 MGP_AJ_G0027261.1 mouse_genomes_project 3 67204765 67225676 + MGP_AJ_P0061222 Otol1 protein_coding protein_coding MGP_AJ_T0064111.1 MGP_AJ_G0027900.1 mouse_genomes_project 3 140590970 140593046 + MGP_AJ_P0064111 Gbp3 protein_coding protein_coding MGP_AJ_T0064112.1 MGP_AJ_G0027900.1 mouse_genomes_project 3 140590996 140604499 + MGP_AJ_P0064112 Gbp3 protein_coding protein_coding MGP_AJ_T0064113.1 MGP_AJ_G0027900.1 mouse_genomes_project 3 140591087 140595358 + MGP_AJ_P0064113 Gbp3 protein_coding protein_coding MGP_AJ_T0064114.1 MGP_AJ_G0027900.1 mouse_genomes_project 3 140591089 140604506 + MGP_AJ_P0064114 Gbp3 protein_coding protein_coding MGP_AJ_T0064115.1 MGP_AJ_G0027900.1 mouse_genomes_project 3 140591119 140596806 + Gbp3 protein_coding processed_transcript MGP_AJ_T0064116.1 MGP_AJ_G0027900.1 mouse_genomes_project 3 140591416 140604504 + MGP_AJ_P0064116 Gbp3 protein_coding protein_coding MGP_AJ_T0064117.1 MGP_AJ_G0027900.1 mouse_genomes_project 3 140592342 140596352 + MGP_AJ_P0064117 Gbp3 protein_coding protein_coding MGP_AJ_T0014217.1 MGP_AJ_G0012312.1 mouse_genomes_project 3 99186904 99187464 + processed_pseudogene processed_pseudogene MGP_AJ_T0101128.1 MGP_AJ_G0039094.1 mouse_genomes_project 3 67162774 67162905 - Gm23484 snoRNA snoRNA MGP_AJ_T0014064.1 MGP_AJ_G0012159.1 mouse_genomes_project 3 55717392 55719001 + processed_pseudogene processed_pseudogene MGP_AJ_T0001325.1 MGP_AJ_G0001249.1 mouse_genomes_project 3 124779163 124781079 + TEC TEC MGP_AJ_T0013974.1 MGP_AJ_G0012069.1 mouse_genomes_project 3 27051504 27051943 + processed_pseudogene processed_pseudogene MGP_AJ_T0007695.1 MGP_AJ_G0006288.1 mouse_genomes_project 3 122281376 122349793 + Gm43731 lincRNA lincRNA MGP_AJ_T0014141.1 MGP_AJ_G0012236.1 mouse_genomes_project 3 77187697 77188777 - processed_pseudogene processed_pseudogene MGP_AJ_T0063552.1 MGP_AJ_G0027795.1 mouse_genomes_project 3 120332053 120342988 + Gclm protein_coding processed_transcript MGP_AJ_T0063553.1 MGP_AJ_G0027795.1 mouse_genomes_project 3 120332327 120352237 + MGP_AJ_P0063553 Gclm protein_coding protein_coding MGP_AJ_T0063554.1 MGP_AJ_G0027795.1 mouse_genomes_project 3 120332329 120348460 + MGP_AJ_P0063554 Gclm protein_coding protein_coding MGP_AJ_T0063555.1 MGP_AJ_G0027795.1 mouse_genomes_project 3 120332422 120351065 + MGP_AJ_P0063555 Gclm protein_coding protein_coding MGP_AJ_T0063556.1 MGP_AJ_G0027795.1 mouse_genomes_project 3 120347622 120352095 + Gclm protein_coding retained_intron MGP_AJ_T0004304.1 MGP_AJ_G0003772.1 mouse_genomes_project 3 93970727 93981080 - Gm15444 antisense antisense MGP_AJ_T0014059.1 MGP_AJ_G0012154.1 mouse_genomes_project 3 54864456 54864952 - processed_pseudogene processed_pseudogene MGP_AJ_T0062585.1 MGP_AJ_G0027570.1 mouse_genomes_project 3 93982030 93984651 + MGP_AJ_P0062585 Hist2h2be protein_coding protein_coding MGP_AJ_T0061682.1 MGP_AJ_G0027367.1 mouse_genomes_project 3 85751974 85760253 + MGP_AJ_P0061682 Ssr2 protein_coding protein_coding MGP_AJ_T0061683.1 MGP_AJ_G0027367.1 mouse_genomes_project 3 85752037 85756362 + MGP_AJ_P0061683 Ssr2 protein_coding protein_coding MGP_AJ_T0061684.1 MGP_AJ_G0027367.1 mouse_genomes_project 3 85752047 85756355 + MGP_AJ_P0061684 Ssr2 protein_coding protein_coding MGP_AJ_T0061685.1 MGP_AJ_G0027367.1 mouse_genomes_project 3 85755974 85766474 + MGP_AJ_P0061685 Ssr2 protein_coding protein_coding MGP_AJ_T0061686.1 MGP_AJ_G0027367.1 mouse_genomes_project 3 85756007 85766074 + MGP_AJ_P0061686 Ssr2 protein_coding protein_coding MGP_AJ_T0061687.1 MGP_AJ_G0027367.1 mouse_genomes_project 3 85756033 85766088 + MGP_AJ_P0061687 Ssr2 protein_coding protein_coding MGP_AJ_T0061688.1 MGP_AJ_G0027367.1 mouse_genomes_project 3 85756037 85766474 + MGP_AJ_P0061688 Ssr2 protein_coding protein_coding MGP_AJ_T0014382.1 MGP_AJ_G0012477.1 mouse_genomes_project 3 154511671 154512137 + processed_pseudogene processed_pseudogene MGP_AJ_T0014261.1 MGP_AJ_G0012356.1 mouse_genomes_project 3 111047862 111050117 + processed_pseudogene processed_pseudogene MGP_AJ_T0014156.1 MGP_AJ_G0012251.1 mouse_genomes_project 3 84133274 84134221 - processed_pseudogene processed_pseudogene MGP_AJ_T0001218.1 MGP_AJ_G0001142.1 mouse_genomes_project 3 52641460 52643813 + TEC TEC MGP_AJ_T0099008.1 MGP_AJ_G0036985.1 mouse_genomes_project 3 103681819 103683253 - Gm43328 sense_intronic sense_intronic MGP_AJ_T0102003.1 MGP_AJ_G0039816.1 mouse_genomes_project 3 37924962 37926224 + transcribed_unprocessed_pseudogene retained_intron MGP_AJ_T0102004.1 MGP_AJ_G0039816.1 mouse_genomes_project 3 37925144 37955554 + transcribed_unprocessed_pseudogene processed_transcript MGP_AJ_T0062162.1 MGP_AJ_G0027461.1 mouse_genomes_project 3 89940992 89942307 + MGP_AJ_P0062162 Sprr2j-ps protein_coding protein_coding MGP_AJ_T0013939.1 MGP_AJ_G0012034.1 mouse_genomes_project 3 13058763 13059824 - processed_pseudogene processed_pseudogene MGP_AJ_T0061914.1 MGP_AJ_G0027402.1 mouse_genomes_project 3 86663554 86666488 - MGP_AJ_P0061914 Cks1b protein_coding protein_coding MGP_AJ_T0061915.1 MGP_AJ_G0027402.1 mouse_genomes_project 3 86663639 86666122 - MGP_AJ_P0061915 Cks1b protein_coding protein_coding MGP_AJ_T0061916.1 MGP_AJ_G0027402.1 mouse_genomes_project 3 86663926 86666324 - MGP_AJ_P0061916 Cks1b protein_coding nonsense_mediated_decay MGP_AJ_T0063499.1 MGP_AJ_G0027786.1 mouse_genomes_project 3 119267102 119350161 - MGP_AJ_P0063499 Tmem56 protein_coding protein_coding MGP_AJ_T0063500.1 MGP_AJ_G0027786.1 mouse_genomes_project 3 119267349 119331144 - MGP_AJ_P0063500 Tmem56 protein_coding protein_coding MGP_AJ_T0063501.1 MGP_AJ_G0027786.1 mouse_genomes_project 3 119267349 119331118 - MGP_AJ_P0063501 Tmem56 protein_coding protein_coding MGP_AJ_T0063502.1 MGP_AJ_G0027786.1 mouse_genomes_project 3 119271379 119319862 - MGP_AJ_P0063502 Tmem56 protein_coding protein_coding MGP_AJ_T0063503.1 MGP_AJ_G0027786.1 mouse_genomes_project 3 119294983 119350161 - MGP_AJ_P0063503 Tmem56 protein_coding protein_coding MGP_AJ_T0063504.1 MGP_AJ_G0027786.1 mouse_genomes_project 3 119295027 119298183 - Tmem56 protein_coding retained_intron MGP_AJ_T0063505.1 MGP_AJ_G0027786.1 mouse_genomes_project 3 119302331 119350058 - Tmem56 protein_coding processed_transcript MGP_AJ_T0063506.1 MGP_AJ_G0027786.1 mouse_genomes_project 3 119302384 119350065 - Tmem56 protein_coding processed_transcript MGP_AJ_T0060445.1 MGP_AJ_G0027105.1 mouse_genomes_project 3 30147821 30284210 - MGP_AJ_P0060445 Pex5l protein_coding protein_coding MGP_AJ_T0060446.1 MGP_AJ_G0027105.1 mouse_genomes_project 3 30147821 30283218 - MGP_AJ_P0060446 Pex5l protein_coding protein_coding MGP_AJ_T0060447.1 MGP_AJ_G0027105.1 mouse_genomes_project 3 30147821 30284210 - MGP_AJ_P0060447 Pex5l protein_coding protein_coding MGP_AJ_T0060448.1 MGP_AJ_G0027105.1 mouse_genomes_project 3 30147821 30284210 - MGP_AJ_P0060448 Pex5l protein_coding protein_coding MGP_AJ_T0060449.1 MGP_AJ_G0027105.1 mouse_genomes_project 3 30147821 30284210 - MGP_AJ_P0060449 Pex5l protein_coding protein_coding MGP_AJ_T0060450.1 MGP_AJ_G0027105.1 mouse_genomes_project 3 30148047 30284179 - MGP_AJ_P0060450 Pex5l protein_coding protein_coding MGP_AJ_T0060451.1 MGP_AJ_G0027105.1 mouse_genomes_project 3 30148367 30344838 - MGP_AJ_P0060451 Pex5l protein_coding protein_coding MGP_AJ_T0060452.1 MGP_AJ_G0027105.1 mouse_genomes_project 3 30148367 30284185 - MGP_AJ_P0060452 Pex5l protein_coding protein_coding MGP_AJ_T0060453.1 MGP_AJ_G0027105.1 mouse_genomes_project 3 30149043 30185334 - MGP_AJ_P0060453 Pex5l protein_coding protein_coding MGP_AJ_T0060454.1 MGP_AJ_G0027105.1 mouse_genomes_project 3 30152771 30345003 - Pex5l protein_coding retained_intron MGP_AJ_T0060455.1 MGP_AJ_G0027105.1 mouse_genomes_project 3 30332778 30344832 - Pex5l protein_coding processed_transcript MGP_AJ_T0060456.1 MGP_AJ_G0027105.1 mouse_genomes_project 3 30341723 30344939 - Pex5l protein_coding retained_intron MGP_AJ_T0099870.1 MGP_AJ_G0037836.1 mouse_genomes_project 3 114473225 114473401 - Gm22361 snRNA snRNA MGP_AJ_T0004208.1 MGP_AJ_G0003704.1 mouse_genomes_project 3 25929273 25937621 - Gm33051 antisense antisense MGP_AJ_T0062741.1 MGP_AJ_G0027618.1 mouse_genomes_project 3 96628611 96686551 - MGP_AJ_P0062741 Hsd3b3 protein_coding protein_coding MGP_AJ_T0062742.1 MGP_AJ_G0027618.1 mouse_genomes_project 3 96628617 96636980 - MGP_AJ_P0062742 Hsd3b3 protein_coding protein_coding MGP_AJ_T0062743.1 MGP_AJ_G0027618.1 mouse_genomes_project 3 96628617 96636980 - MGP_AJ_P0062743 Hsd3b3 protein_coding protein_coding MGP_AJ_T0062744.1 MGP_AJ_G0027618.1 mouse_genomes_project 3 96629536 96646378 - MGP_AJ_P0062744 Hsd3b3 protein_coding protein_coding MGP_AJ_T0062745.1 MGP_AJ_G0027618.1 mouse_genomes_project 3 96641643 96647060 - Hsd3b3 protein_coding processed_transcript MGP_AJ_T0014101.1 MGP_AJ_G0012196.1 mouse_genomes_project 3 65530602 65531183 + processed_pseudogene processed_pseudogene MGP_AJ_T0007504.1 MGP_AJ_G0006146.1 mouse_genomes_project 3 31849885 31866867 - Gm3143 lincRNA lincRNA MGP_AJ_T0007505.1 MGP_AJ_G0006146.1 mouse_genomes_project 3 31859569 31866869 - Gm3143 lincRNA lincRNA MGP_AJ_T0014223.1 MGP_AJ_G0012318.1 mouse_genomes_project 3 100614507 100614634 - processed_pseudogene processed_pseudogene MGP_AJ_T0001138.1 MGP_AJ_G0001064.1 mouse_genomes_project 3 29915296 29915609 - TEC TEC MGP_AJ_T0014115.1 MGP_AJ_G0012210.1 mouse_genomes_project 3 68666937 68667378 - processed_pseudogene processed_pseudogene MGP_AJ_T0014313.1 MGP_AJ_G0012408.1 mouse_genomes_project 3 128994747 128996052 - processed_pseudogene processed_pseudogene MGP_AJ_T0001303.1 MGP_AJ_G0001227.1 mouse_genomes_project 3 119495502 119498858 - TEC TEC MGP_AJ_T0001188.1 MGP_AJ_G0001114.1 mouse_genomes_project 3 48497928 48500427 - TEC TEC MGP_AJ_T0064071.1 MGP_AJ_G0027892.1 mouse_genomes_project 3 136972601 137123183 - MGP_AJ_P0064071 Rap1gds1 protein_coding protein_coding MGP_AJ_T0064072.1 MGP_AJ_G0027892.1 mouse_genomes_project 3 136972605 137123119 - MGP_AJ_P0064072 Rap1gds1 protein_coding protein_coding MGP_AJ_T0064073.1 MGP_AJ_G0027892.1 mouse_genomes_project 3 136972609 137123052 - MGP_AJ_P0064073 Rap1gds1 protein_coding protein_coding MGP_AJ_T0064074.1 MGP_AJ_G0027892.1 mouse_genomes_project 3 136989121 137123122 - MGP_AJ_P0064074 Rap1gds1 protein_coding nonsense_mediated_decay MGP_AJ_T0064075.1 MGP_AJ_G0027892.1 mouse_genomes_project 3 136989124 137123130 - MGP_AJ_P0064075 Rap1gds1 protein_coding protein_coding MGP_AJ_T0064076.1 MGP_AJ_G0027892.1 mouse_genomes_project 3 137005393 137032935 - Rap1gds1 protein_coding retained_intron MGP_AJ_T0064077.1 MGP_AJ_G0027892.1 mouse_genomes_project 3 137062978 137123175 - Rap1gds1 protein_coding retained_intron MGP_AJ_T0064078.1 MGP_AJ_G0027892.1 mouse_genomes_project 3 137070273 137122780 - Rap1gds1 protein_coding processed_transcript MGP_AJ_T0064079.1 MGP_AJ_G0027892.1 mouse_genomes_project 3 137097865 137123122 - Rap1gds1 protein_coding retained_intron MGP_AJ_T0061062.1 MGP_AJ_G0027222.1 mouse_genomes_project 3 60859321 61014952 - MGP_AJ_P0061062 Plch1 protein_coding protein_coding MGP_AJ_T0061063.1 MGP_AJ_G0027222.1 mouse_genomes_project 3 60859321 61015000 - MGP_AJ_P0061063 Plch1 protein_coding protein_coding MGP_AJ_T0061064.1 MGP_AJ_G0027222.1 mouse_genomes_project 3 60859324 60865445 - Plch1 protein_coding retained_intron MGP_AJ_T0061065.1 MGP_AJ_G0027222.1 mouse_genomes_project 3 60859324 60904450 - Plch1 protein_coding retained_intron MGP_AJ_T0061066.1 MGP_AJ_G0027222.1 mouse_genomes_project 3 60859324 61014952 - MGP_AJ_P0061066 Plch1 protein_coding protein_coding MGP_AJ_T0061067.1 MGP_AJ_G0027222.1 mouse_genomes_project 3 60859324 61015244 - MGP_AJ_P0061067 Plch1 protein_coding protein_coding MGP_AJ_T0061068.1 MGP_AJ_G0027222.1 mouse_genomes_project 3 60859324 61015218 - MGP_AJ_P0061068 Plch1 protein_coding protein_coding MGP_AJ_T0061069.1 MGP_AJ_G0027222.1 mouse_genomes_project 3 60859325 61014952 - MGP_AJ_P0061069 Plch1 protein_coding protein_coding MGP_AJ_T0061070.1 MGP_AJ_G0027222.1 mouse_genomes_project 3 60859818 61063286 - MGP_AJ_P0061070 Plch1 protein_coding protein_coding MGP_AJ_T0061071.1 MGP_AJ_G0027222.1 mouse_genomes_project 3 60862020 60865134 - MGP_AJ_P0061071 Plch1 protein_coding protein_coding MGP_AJ_T0061072.1 MGP_AJ_G0027222.1 mouse_genomes_project 3 60864906 61015320 - MGP_AJ_P0061072 Plch1 protein_coding protein_coding MGP_AJ_T0061073.1 MGP_AJ_G0027222.1 mouse_genomes_project 3 60944893 61063256 - MGP_AJ_P0061073 Plch1 protein_coding protein_coding MGP_AJ_T0061074.1 MGP_AJ_G0027222.1 mouse_genomes_project 3 61033290 61063187 - MGP_AJ_P0061074 Plch1 protein_coding protein_coding MGP_AJ_T0062736.1 MGP_AJ_G0027615.1 mouse_genomes_project 3 96378842 96390356 - MGP_AJ_P0062736 protein_coding protein_coding MGP_AJ_T0014133.1 MGP_AJ_G0012228.1 mouse_genomes_project 3 75153195 75153636 + processed_pseudogene processed_pseudogene MGP_AJ_T0004406.1 MGP_AJ_G0003839.1 mouse_genomes_project 3 150865062 150879696 + AI115009 antisense antisense MGP_AJ_T0001260.1 MGP_AJ_G0001184.1 mouse_genomes_project 3 87596907 87602755 + TEC TEC MGP_AJ_T0004365.1 MGP_AJ_G0003809.1 mouse_genomes_project 3 121544812 121547932 - Gm43591 antisense antisense MGP_AJ_T0014050.1 MGP_AJ_G0012145.1 mouse_genomes_project 3 51056416 51057130 + processed_pseudogene processed_pseudogene MGP_AJ_T0014287.1 MGP_AJ_G0012382.1 mouse_genomes_project 3 119947610 119947987 + processed_pseudogene processed_pseudogene MGP_AJ_T0007623.1 MGP_AJ_G0006230.1 mouse_genomes_project 3 89638806 89647026 + Gm43740 lincRNA lincRNA MGP_AJ_T0099134.1 MGP_AJ_G0037101.1 mouse_genomes_project 3 152880806 152904634 + Gm38139 sense_overlapping sense_overlapping MGP_AJ_T0060140.1 MGP_AJ_G0027044.1 mouse_genomes_project 3 12377799 12414503 - MGP_AJ_P0060140 Gm9733 protein_coding protein_coding MGP_AJ_T0101798.1 MGP_AJ_G0039708.1 mouse_genomes_project 3 126890274 126890960 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0061337.1 MGP_AJ_G0027288.1 mouse_genomes_project 3 79181642 79239517 - MGP_AJ_P0061337 Gucy1a3 protein_coding protein_coding MGP_AJ_T0061338.1 MGP_AJ_G0027288.1 mouse_genomes_project 3 79181652 79240231 - MGP_AJ_P0061338 Gucy1a3 protein_coding protein_coding MGP_AJ_T0061339.1 MGP_AJ_G0027288.1 mouse_genomes_project 3 79183780 79191243 - MGP_AJ_P0061339 Gucy1a3 protein_coding protein_coding MGP_AJ_T0061340.1 MGP_AJ_G0027288.1 mouse_genomes_project 3 79195946 79240233 - Gucy1a3 protein_coding retained_intron MGP_AJ_T0061341.1 MGP_AJ_G0027288.1 mouse_genomes_project 3 79208333 79240049 - Gucy1a3 protein_coding processed_transcript MGP_AJ_T0014046.1 MGP_AJ_G0012141.1 mouse_genomes_project 3 49452667 49452908 + processed_pseudogene processed_pseudogene MGP_AJ_T0014077.1 MGP_AJ_G0012172.1 mouse_genomes_project 3 58519037 58519532 - processed_pseudogene processed_pseudogene MGP_AJ_T0061415.1 MGP_AJ_G0027309.1 mouse_genomes_project 3 81702188 81705647 + MGP_AJ_P0061415 Tigd4 protein_coding protein_coding MGP_AJ_T0061526.1 MGP_AJ_G0027335.1 mouse_genomes_project 3 84999024 85025179 - MGP_AJ_P0061526 Prcc protein_coding protein_coding MGP_AJ_T0102534.1 MGP_AJ_G0040276.1 mouse_genomes_project 3 61377497 61409548 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0063518.1 MGP_AJ_G0027789.1 mouse_genomes_project 3 119531691 119533075 - Slc44a3 protein_coding processed_transcript MGP_AJ_T0063519.1 MGP_AJ_G0027789.1 mouse_genomes_project 3 119531691 119604560 - MGP_AJ_P0063519 Slc44a3 protein_coding protein_coding MGP_AJ_T0063520.1 MGP_AJ_G0027789.1 mouse_genomes_project 3 119592453 119599263 - Slc44a3 protein_coding processed_transcript MGP_AJ_T0001110.1 MGP_AJ_G0001036.1 mouse_genomes_project 3 5830863 5833829 - TEC TEC MGP_AJ_T0010547.1 MGP_AJ_G0008669.1 mouse_genomes_project 3 120636217 120636274 - Mir7657 miRNA miRNA MGP_AJ_T0004349.1 MGP_AJ_G0003796.1 mouse_genomes_project 3 106340434 106341385 - Gm12523 antisense antisense MGP_AJ_T0060537.1 MGP_AJ_G0027119.1 mouse_genomes_project 3 33621224 33627929 + MGP_AJ_P0060537 1810062G17Rik protein_coding protein_coding MGP_AJ_T0014346.1 MGP_AJ_G0012441.1 mouse_genomes_project 3 136875344 136876010 - processed_pseudogene processed_pseudogene MGP_AJ_T0063733.1 MGP_AJ_G0027825.1 mouse_genomes_project 3 125915160 125943053 - MGP_AJ_P0063733 5730508B09Rik protein_coding protein_coding MGP_AJ_T0063734.1 MGP_AJ_G0027825.1 mouse_genomes_project 3 125915782 125943017 - MGP_AJ_P0063734 5730508B09Rik protein_coding protein_coding MGP_AJ_T0014092.1 MGP_AJ_G0012187.1 mouse_genomes_project 3 63379484 63380240 - processed_pseudogene processed_pseudogene MGP_AJ_T0014001.1 MGP_AJ_G0012096.1 mouse_genomes_project 3 34743320 34743964 - processed_pseudogene processed_pseudogene MGP_AJ_T0014319.1 MGP_AJ_G0012414.1 mouse_genomes_project 3 131026992 131027421 + processed_pseudogene processed_pseudogene MGP_AJ_T0099876.1 MGP_AJ_G0037842.1 mouse_genomes_project 3 130081779 130081886 - Gm22421 snRNA snRNA MGP_AJ_T0060763.1 MGP_AJ_G0027155.1 mouse_genomes_project 3 48399994 48408466 - MGP_AJ_P0060763 Mgarp protein_coding protein_coding MGP_AJ_T0060764.1 MGP_AJ_G0027155.1 mouse_genomes_project 3 48399994 48408656 - MGP_AJ_P0060764 Mgarp protein_coding protein_coding MGP_AJ_T0060765.1 MGP_AJ_G0027155.1 mouse_genomes_project 3 48399994 48408444 - MGP_AJ_P0060765 Mgarp protein_coding protein_coding MGP_AJ_T0060766.1 MGP_AJ_G0027155.1 mouse_genomes_project 3 48402451 48408421 - Mgarp protein_coding retained_intron MGP_AJ_T0060767.1 MGP_AJ_G0027155.1 mouse_genomes_project 3 48402892 48408406 - Mgarp protein_coding processed_transcript MGP_AJ_T0063000.1 MGP_AJ_G0027673.1 mouse_genomes_project 3 102805569 102808024 + St7l protein_coding retained_intron MGP_AJ_T0063001.1 MGP_AJ_G0027673.1 mouse_genomes_project 3 102806067 102868400 + MGP_AJ_P0063001 St7l protein_coding protein_coding MGP_AJ_T0063002.1 MGP_AJ_G0027673.1 mouse_genomes_project 3 102806067 102872064 + MGP_AJ_P0063002 St7l protein_coding protein_coding MGP_AJ_T0063003.1 MGP_AJ_G0027673.1 mouse_genomes_project 3 102806631 102869783 + MGP_AJ_P0063003 St7l protein_coding protein_coding MGP_AJ_T0063004.1 MGP_AJ_G0027673.1 mouse_genomes_project 3 102806635 102869907 + MGP_AJ_P0063004 St7l protein_coding nonsense_mediated_decay MGP_AJ_T0063005.1 MGP_AJ_G0027673.1 mouse_genomes_project 3 102806644 102831083 + MGP_AJ_P0063005 St7l protein_coding protein_coding MGP_AJ_T0063006.1 MGP_AJ_G0027673.1 mouse_genomes_project 3 102806677 102831015 + St7l protein_coding processed_transcript MGP_AJ_T0063007.1 MGP_AJ_G0027673.1 mouse_genomes_project 3 102812778 102861085 + MGP_AJ_P0063007 St7l protein_coding protein_coding MGP_AJ_T0063008.1 MGP_AJ_G0027673.1 mouse_genomes_project 3 102812801 102824759 + St7l protein_coding processed_transcript MGP_AJ_T0063009.1 MGP_AJ_G0027673.1 mouse_genomes_project 3 102824662 102861073 + MGP_AJ_P0063009 St7l protein_coding nonsense_mediated_decay MGP_AJ_T0063010.1 MGP_AJ_G0027673.1 mouse_genomes_project 3 102830600 102836698 + St7l protein_coding retained_intron MGP_AJ_T0004396.1 MGP_AJ_G0003831.1 mouse_genomes_project 3 139697827 139717733 - Gm15689 antisense antisense MGP_AJ_T0064042.1 MGP_AJ_G0027887.1 mouse_genomes_project 3 136456515 136459751 + Adh4 protein_coding processed_transcript MGP_AJ_T0064043.1 MGP_AJ_G0027887.1 mouse_genomes_project 3 136456536 136465820 + MGP_AJ_P0064043 Adh4 protein_coding protein_coding MGP_AJ_T0064044.1 MGP_AJ_G0027887.1 mouse_genomes_project 3 136456544 136472783 + MGP_AJ_P0064044 Adh4 protein_coding protein_coding MGP_AJ_T0063224.1 MGP_AJ_G0027733.1 mouse_genomes_project 3 106340618 106419141 + MGP_AJ_P0063224 Sort1 protein_coding protein_coding MGP_AJ_T0063225.1 MGP_AJ_G0027733.1 mouse_genomes_project 3 106340627 106419209 + MGP_AJ_P0063225 Sort1 protein_coding protein_coding MGP_AJ_T0063226.1 MGP_AJ_G0027733.1 mouse_genomes_project 3 106413164 106419136 + Sort1 protein_coding retained_intron MGP_AJ_T0062728.1 MGP_AJ_G0027613.1 mouse_genomes_project 3 96124561 96151606 - MGP_AJ_P0062728 protein_coding protein_coding MGP_AJ_T0062729.1 MGP_AJ_G0027613.1 mouse_genomes_project 3 96132553 96145217 - protein_coding retained_intron MGP_AJ_T0062730.1 MGP_AJ_G0027613.1 mouse_genomes_project 3 96133088 96140260 - protein_coding retained_intron MGP_AJ_T0062731.1 MGP_AJ_G0027613.1 mouse_genomes_project 3 96133195 96149162 - MGP_AJ_P0062731 protein_coding protein_coding MGP_AJ_T0062881.1 MGP_AJ_G0027649.1 mouse_genomes_project 3 101003647 101029832 + MGP_AJ_P0062881 Ampd1 protein_coding protein_coding MGP_AJ_T0062882.1 MGP_AJ_G0027649.1 mouse_genomes_project 3 101003655 101029826 + MGP_AJ_P0062882 Ampd1 protein_coding protein_coding MGP_AJ_T0062883.1 MGP_AJ_G0027649.1 mouse_genomes_project 3 101003686 101017964 + MGP_AJ_P0062883 Ampd1 protein_coding protein_coding MGP_AJ_T0062884.1 MGP_AJ_G0027649.1 mouse_genomes_project 3 101023375 101024403 + Ampd1 protein_coding retained_intron MGP_AJ_T0062885.1 MGP_AJ_G0027649.1 mouse_genomes_project 3 101024046 101029818 + MGP_AJ_P0062885 Ampd1 protein_coding protein_coding MGP_AJ_T0009466.1 MGP_AJ_G0007588.1 mouse_genomes_project 3 143079483 143089920 + Gm43742 macro_lncRNA macro_lncRNA MGP_AJ_T0062917.1 MGP_AJ_G0027656.1 mouse_genomes_project 3 101682690 101689709 + MGP_AJ_P0062917 protein_coding protein_coding MGP_AJ_T0011538.1 MGP_AJ_G0009660.1 mouse_genomes_project 3 40989118 40989428 + Gm25714 misc_RNA misc_RNA MGP_AJ_T0061484.1 MGP_AJ_G0027328.1 mouse_genomes_project 3 84666724 84681452 + MGP_AJ_P0061484 Etv3 protein_coding protein_coding MGP_AJ_T0061485.1 MGP_AJ_G0027328.1 mouse_genomes_project 3 84666895 84681438 + MGP_AJ_P0061485 Etv3 protein_coding protein_coding MGP_AJ_T0061486.1 MGP_AJ_G0027328.1 mouse_genomes_project 3 84666924 84681452 + Etv3 protein_coding retained_intron MGP_AJ_T0061487.1 MGP_AJ_G0027328.1 mouse_genomes_project 3 84666931 84672368 + MGP_AJ_P0061487 Etv3 protein_coding protein_coding MGP_AJ_T0061488.1 MGP_AJ_G0027328.1 mouse_genomes_project 3 84666935 84672371 + Etv3 protein_coding retained_intron MGP_AJ_T0102538.1 MGP_AJ_G0040280.1 mouse_genomes_project 3 61990118 61993735 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0063051.1 MGP_AJ_G0027685.1 mouse_genomes_project 3 103914924 103921510 + Wdr77 protein_coding retained_intron MGP_AJ_T0063052.1 MGP_AJ_G0027685.1 mouse_genomes_project 3 103914930 103925454 + MGP_AJ_P0063052 Wdr77 protein_coding nonsense_mediated_decay MGP_AJ_T0063053.1 MGP_AJ_G0027685.1 mouse_genomes_project 3 103915000 103927167 + MGP_AJ_P0063053 Wdr77 protein_coding protein_coding MGP_AJ_T0063054.1 MGP_AJ_G0027685.1 mouse_genomes_project 3 103919866 103920969 + Wdr77 protein_coding retained_intron MGP_AJ_T0063577.1 MGP_AJ_G0027799.1 mouse_genomes_project 3 120826020 120959633 + MGP_AJ_P0063577 Pde5a protein_coding protein_coding MGP_AJ_T0063578.1 MGP_AJ_G0027799.1 mouse_genomes_project 3 120826643 120959631 + MGP_AJ_P0063578 Pde5a protein_coding protein_coding MGP_AJ_T0063579.1 MGP_AJ_G0027799.1 mouse_genomes_project 3 120827295 120874879 + Pde5a protein_coding retained_intron MGP_AJ_T0063580.1 MGP_AJ_G0027799.1 mouse_genomes_project 3 120894106 120905820 + Pde5a protein_coding processed_transcript MGP_AJ_T0101153.1 MGP_AJ_G0039119.1 mouse_genomes_project 3 106091238 106091369 + Gm25592 snoRNA snoRNA MGP_AJ_T0062271.1 MGP_AJ_G0027515.1 mouse_genomes_project 3 92325964 92326048 + MGP_AJ_P0062271 protein_coding protein_coding MGP_AJ_T0004296.1 MGP_AJ_G0003769.1 mouse_genomes_project 3 93049442 93058418 - 6330562C20Rik antisense antisense MGP_AJ_T0004297.1 MGP_AJ_G0003769.1 mouse_genomes_project 3 93050039 93058467 - 6330562C20Rik antisense antisense MGP_AJ_T0004298.1 MGP_AJ_G0003769.1 mouse_genomes_project 3 93054728 93058477 - 6330562C20Rik antisense antisense MGP_AJ_T0001261.1 MGP_AJ_G0001185.1 mouse_genomes_project 3 87621492 87624049 + TEC TEC MGP_AJ_T0013998.1 MGP_AJ_G0012093.1 mouse_genomes_project 3 34266587 34267683 + processed_pseudogene processed_pseudogene MGP_AJ_T0014113.1 MGP_AJ_G0012208.1 mouse_genomes_project 3 67606762 67607321 + processed_pseudogene processed_pseudogene MGP_AJ_T0014373.1 MGP_AJ_G0012468.1 mouse_genomes_project 3 150159143 150159850 - processed_pseudogene processed_pseudogene MGP_AJ_T0062178.1 MGP_AJ_G0027475.1 mouse_genomes_project 3 90196305 90198123 - MGP_AJ_P0062178 Lce1a2 protein_coding protein_coding MGP_AJ_T0062984.1 MGP_AJ_G0027670.1 mouse_genomes_project 3 102730923 102736398 + MGP_AJ_P0062984 Rhoc protein_coding protein_coding MGP_AJ_T0062985.1 MGP_AJ_G0027670.1 mouse_genomes_project 3 102731151 102734913 + MGP_AJ_P0062985 Rhoc protein_coding protein_coding MGP_AJ_T0062986.1 MGP_AJ_G0027670.1 mouse_genomes_project 3 102733918 102734816 + Rhoc protein_coding retained_intron MGP_AJ_T0014135.1 MGP_AJ_G0012230.1 mouse_genomes_project 3 75231531 75232080 - processed_pseudogene processed_pseudogene MGP_AJ_T0061551.1 MGP_AJ_G0027340.1 mouse_genomes_project 3 85091791 85096503 + MGP_AJ_P0061551 Crabp2 protein_coding protein_coding MGP_AJ_T0061552.1 MGP_AJ_G0027340.1 mouse_genomes_project 3 85095270 85096112 + Crabp2 protein_coding retained_intron MGP_AJ_T0062198.1 MGP_AJ_G0027493.1 mouse_genomes_project 3 90577341 90578568 - MGP_AJ_P0062198 Lce1m protein_coding protein_coding MGP_AJ_T0062199.1 MGP_AJ_G0027493.1 mouse_genomes_project 3 90578014 90578567 - MGP_AJ_P0062199 Lce1m protein_coding protein_coding MGP_AJ_T0064181.1 MGP_AJ_G0027917.1 mouse_genomes_project 3 143224272 143228066 + Odf2l protein_coding retained_intron MGP_AJ_T0064182.1 MGP_AJ_G0027917.1 mouse_genomes_project 3 143224273 143259050 + MGP_AJ_P0064182 Odf2l protein_coding protein_coding MGP_AJ_T0064183.1 MGP_AJ_G0027917.1 mouse_genomes_project 3 143224273 143259030 + MGP_AJ_P0064183 Odf2l protein_coding protein_coding MGP_AJ_T0064184.1 MGP_AJ_G0027917.1 mouse_genomes_project 3 143224284 143243056 + Odf2l protein_coding retained_intron MGP_AJ_T0064185.1 MGP_AJ_G0027917.1 mouse_genomes_project 3 143224284 143259020 + MGP_AJ_P0064185 Odf2l protein_coding protein_coding MGP_AJ_T0064186.1 MGP_AJ_G0027917.1 mouse_genomes_project 3 143224292 143242967 + Odf2l protein_coding retained_intron MGP_AJ_T0064187.1 MGP_AJ_G0027917.1 mouse_genomes_project 3 143224304 143259024 + MGP_AJ_P0064187 Odf2l protein_coding protein_coding MGP_AJ_T0064188.1 MGP_AJ_G0027917.1 mouse_genomes_project 3 143224305 143234686 + MGP_AJ_P0064188 Odf2l protein_coding nonsense_mediated_decay MGP_AJ_T0064189.1 MGP_AJ_G0027917.1 mouse_genomes_project 3 143224658 143225314 + Odf2l protein_coding processed_transcript MGP_AJ_T0064190.1 MGP_AJ_G0027917.1 mouse_genomes_project 3 143224658 143231826 + MGP_AJ_P0064190 Odf2l protein_coding protein_coding MGP_AJ_T0064191.1 MGP_AJ_G0027917.1 mouse_genomes_project 3 143224754 143259030 + MGP_AJ_P0064191 Odf2l protein_coding unknown_likely_coding MGP_AJ_T0064192.1 MGP_AJ_G0027917.1 mouse_genomes_project 3 143226330 143234678 + MGP_AJ_P0064192 Odf2l protein_coding protein_coding MGP_AJ_T0064193.1 MGP_AJ_G0027917.1 mouse_genomes_project 3 143233541 143249569 + MGP_AJ_P0064193 Odf2l protein_coding protein_coding MGP_AJ_T0064194.1 MGP_AJ_G0027917.1 mouse_genomes_project 3 143238295 143254212 + Odf2l protein_coding retained_intron MGP_AJ_T0064195.1 MGP_AJ_G0027917.1 mouse_genomes_project 3 143245218 143254212 + Odf2l protein_coding retained_intron MGP_AJ_T0064196.1 MGP_AJ_G0027917.1 mouse_genomes_project 3 143245427 143251502 + Odf2l protein_coding processed_transcript MGP_AJ_T0064197.1 MGP_AJ_G0027917.1 mouse_genomes_project 3 143245436 143259028 + Odf2l protein_coding retained_intron MGP_AJ_T0064198.1 MGP_AJ_G0027917.1 mouse_genomes_project 3 143245458 143254164 + MGP_AJ_P0064198 Odf2l protein_coding protein_coding MGP_AJ_T0064199.1 MGP_AJ_G0027917.1 mouse_genomes_project 3 143254152 143258761 + MGP_AJ_P0064199 Odf2l protein_coding nonsense_mediated_decay MGP_AJ_T0060609.1 MGP_AJ_G0027131.1 mouse_genomes_project 3 34550418 34565662 - MGP_AJ_P0060609 Nudt6 protein_coding protein_coding MGP_AJ_T0060610.1 MGP_AJ_G0027131.1 mouse_genomes_project 3 34550418 34565046 - MGP_AJ_P0060610 Nudt6 protein_coding protein_coding MGP_AJ_T0060611.1 MGP_AJ_G0027131.1 mouse_genomes_project 3 34550482 34565036 - MGP_AJ_P0060611 Nudt6 protein_coding protein_coding MGP_AJ_T0060612.1 MGP_AJ_G0027131.1 mouse_genomes_project 3 34550494 34565056 - MGP_AJ_P0060612 Nudt6 protein_coding protein_coding MGP_AJ_T0060613.1 MGP_AJ_G0027131.1 mouse_genomes_project 3 34550583 34556149 - Nudt6 protein_coding processed_transcript MGP_AJ_T0060614.1 MGP_AJ_G0027131.1 mouse_genomes_project 3 34550860 34565039 - MGP_AJ_P0060614 Nudt6 protein_coding protein_coding MGP_AJ_T0060615.1 MGP_AJ_G0027131.1 mouse_genomes_project 3 34554979 34565023 - MGP_AJ_P0060615 Nudt6 protein_coding nonsense_mediated_decay MGP_AJ_T0060616.1 MGP_AJ_G0027131.1 mouse_genomes_project 3 34557865 34565032 - MGP_AJ_P0060616 Nudt6 protein_coding protein_coding MGP_AJ_T0001352.1 MGP_AJ_G0001275.1 mouse_genomes_project 3 129090054 129092586 - TEC TEC MGP_AJ_T0060168.1 MGP_AJ_G0027053.1 mouse_genomes_project 3 16637262 16731841 + MGP_AJ_P0060168 Dnajc5b protein_coding protein_coding MGP_AJ_T0060169.1 MGP_AJ_G0027053.1 mouse_genomes_project 3 16637282 16731971 + MGP_AJ_P0060169 Dnajc5b protein_coding protein_coding MGP_AJ_T0060170.1 MGP_AJ_G0027053.1 mouse_genomes_project 3 16659043 16731859 + MGP_AJ_P0060170 Dnajc5b protein_coding protein_coding MGP_AJ_T0060171.1 MGP_AJ_G0027053.1 mouse_genomes_project 3 16659619 16731970 + MGP_AJ_P0060171 Dnajc5b protein_coding protein_coding MGP_AJ_T0013994.1 MGP_AJ_G0012089.1 mouse_genomes_project 3 33965749 33966356 - processed_pseudogene processed_pseudogene MGP_AJ_T0013919.1 MGP_AJ_G0012014.1 mouse_genomes_project 3 7440499 7440678 + processed_pseudogene processed_pseudogene MGP_AJ_T0102530.1 MGP_AJ_G0040272.1 mouse_genomes_project 3 56563610 56692202 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0001371.1 MGP_AJ_G0001294.1 mouse_genomes_project 3 144457628 144458968 + TEC TEC MGP_AJ_T0062587.1 MGP_AJ_G0027572.1 mouse_genomes_project 3 94000607 94006702 - MGP_AJ_P0062587 Hist2h2aa2 protein_coding protein_coding MGP_AJ_T0060235.1 MGP_AJ_G0027066.1 mouse_genomes_project 3 22492317 23492557 - MGP_AJ_P0060235 Nlgn1 protein_coding protein_coding MGP_AJ_T0060236.1 MGP_AJ_G0027066.1 mouse_genomes_project 3 22497898 23289687 - MGP_AJ_P0060236 Nlgn1 protein_coding protein_coding MGP_AJ_T0060237.1 MGP_AJ_G0027066.1 mouse_genomes_project 3 22497898 23289687 - MGP_AJ_P0060237 Nlgn1 protein_coding protein_coding MGP_AJ_T0060238.1 MGP_AJ_G0027066.1 mouse_genomes_project 3 22499518 23309999 - MGP_AJ_P0060238 Nlgn1 protein_coding protein_coding MGP_AJ_T0060239.1 MGP_AJ_G0027066.1 mouse_genomes_project 3 23287622 23491967 - Nlgn1 protein_coding retained_intron MGP_AJ_T0013976.1 MGP_AJ_G0012071.1 mouse_genomes_project 3 27963294 27963562 - processed_pseudogene processed_pseudogene MGP_AJ_T0064275.1 MGP_AJ_G0027937.1 mouse_genomes_project 3 144776592 144817742 - MGP_AJ_P0064275 Samd13 protein_coding protein_coding MGP_AJ_T0064276.1 MGP_AJ_G0027937.1 mouse_genomes_project 3 144777510 144814550 - MGP_AJ_P0064276 Samd13 protein_coding protein_coding MGP_AJ_T0064277.1 MGP_AJ_G0027937.1 mouse_genomes_project 3 144777521 144814662 - MGP_AJ_P0064277 Samd13 protein_coding protein_coding MGP_AJ_T0064278.1 MGP_AJ_G0027937.1 mouse_genomes_project 3 144777606 144817625 - MGP_AJ_P0064278 Samd13 protein_coding protein_coding MGP_AJ_T0064281.1 MGP_AJ_G0027937.1 mouse_genomes_project 3 144812591 144817621 - Samd13 protein_coding retained_intron MGP_AJ_T0060934.1 MGP_AJ_G0027190.1 mouse_genomes_project 3 54692537 54701085 - MGP_AJ_P0060934 Commd2 protein_coding protein_coding MGP_AJ_T0060935.1 MGP_AJ_G0027190.1 mouse_genomes_project 3 54694550 54701078 - MGP_AJ_P0060935 Commd2 protein_coding nonsense_mediated_decay MGP_AJ_T0060936.1 MGP_AJ_G0027190.1 mouse_genomes_project 3 54700469 54701085 - Commd2 protein_coding retained_intron MGP_AJ_T0014104.1 MGP_AJ_G0012199.1 mouse_genomes_project 3 66512125 66512666 - processed_pseudogene processed_pseudogene MGP_AJ_T0062892.1 MGP_AJ_G0027651.1 mouse_genomes_project 3 101100350 101107843 + MGP_AJ_P0062892 Bcas2 protein_coding protein_coding MGP_AJ_T0062893.1 MGP_AJ_G0027651.1 mouse_genomes_project 3 101100398 101107516 + Bcas2 protein_coding retained_intron MGP_AJ_T0062894.1 MGP_AJ_G0027651.1 mouse_genomes_project 3 101100444 101107518 + Bcas2 protein_coding retained_intron MGP_AJ_T0062895.1 MGP_AJ_G0027651.1 mouse_genomes_project 3 101100457 101107138 + MGP_AJ_P0062895 Bcas2 protein_coding nonsense_mediated_decay MGP_AJ_T0062896.1 MGP_AJ_G0027651.1 mouse_genomes_project 3 101100467 101107857 + MGP_AJ_P0062896 Bcas2 protein_coding nonsense_mediated_decay MGP_AJ_T0062897.1 MGP_AJ_G0027651.1 mouse_genomes_project 3 101100480 101103238 + Bcas2 protein_coding retained_intron MGP_AJ_T0101141.1 MGP_AJ_G0039107.1 mouse_genomes_project 3 85879131 85879266 + Gm25945 snoRNA snoRNA MGP_AJ_T0101159.1 MGP_AJ_G0039125.1 mouse_genomes_project 3 114491452 114491549 + Gm26358 snoRNA snoRNA MGP_AJ_T0004214.1 MGP_AJ_G0003708.1 mouse_genomes_project 3 28436684 28468554 + Gm15496 antisense antisense MGP_AJ_T0004215.1 MGP_AJ_G0003708.1 mouse_genomes_project 3 28462479 28466669 + Gm15496 antisense antisense MGP_AJ_T0101146.1 MGP_AJ_G0039112.1 mouse_genomes_project 3 93943485 93943612 + Gm22027 snoRNA snoRNA MGP_AJ_T0062580.1 MGP_AJ_G0027567.1 mouse_genomes_project 3 93964276 93966178 - MGP_AJ_P0062580 Bola1 protein_coding protein_coding MGP_AJ_T0062581.1 MGP_AJ_G0027567.1 mouse_genomes_project 3 93964276 93965275 - MGP_AJ_P0062581 Bola1 protein_coding protein_coding MGP_AJ_T0062582.1 MGP_AJ_G0027567.1 mouse_genomes_project 3 93964551 93980621 - MGP_AJ_P0062582 Bola1 protein_coding protein_coding MGP_AJ_T0099846.1 MGP_AJ_G0037812.1 mouse_genomes_project 3 84047610 84047770 + Gm23376 snRNA snRNA MGP_AJ_T0001301.1 MGP_AJ_G0001225.1 mouse_genomes_project 3 119097817 119098514 - TEC TEC MGP_AJ_T0062200.1 MGP_AJ_G0027494.1 mouse_genomes_project 3 90635131 90659615 + MGP_AJ_P0062200 protein_coding protein_coding MGP_AJ_T0007488.1 MGP_AJ_G0006131.1 mouse_genomes_project 3 24282520 24285514 + 1700125G22Rik lincRNA lincRNA MGP_AJ_T0014263.1 MGP_AJ_G0012358.1 mouse_genomes_project 3 111086109 111086940 - processed_pseudogene processed_pseudogene MGP_AJ_T0001370.1 MGP_AJ_G0001293.1 mouse_genomes_project 3 141703461 141710656 + TEC TEC MGP_AJ_T0001311.1 MGP_AJ_G0001235.1 mouse_genomes_project 3 121099936 121103517 + TEC TEC MGP_AJ_T0062996.1 MGP_AJ_G0027672.1 mouse_genomes_project 3 102762950 102806070 - MGP_AJ_P0062996 Capza1 protein_coding protein_coding MGP_AJ_T0062997.1 MGP_AJ_G0027672.1 mouse_genomes_project 3 102774227 102805965 - MGP_AJ_P0062997 Capza1 protein_coding protein_coding MGP_AJ_T0062998.1 MGP_AJ_G0027672.1 mouse_genomes_project 3 102780688 102783556 - Capza1 protein_coding retained_intron MGP_AJ_T0062999.1 MGP_AJ_G0027672.1 mouse_genomes_project 3 102782881 102805938 - Capza1 protein_coding retained_intron MGP_AJ_T0062158.1 MGP_AJ_G0027458.1 mouse_genomes_project 3 89887677 89888933 + MGP_AJ_P0062158 Sprr2f protein_coding protein_coding MGP_AJ_T0061157.1 MGP_AJ_G0027246.1 mouse_genomes_project 3 65080575 65249246 + MGP_AJ_P0061157 Iqcj protein_coding protein_coding MGP_AJ_T0061159.1 MGP_AJ_G0027246.1 mouse_genomes_project 3 65080668 65256735 + MGP_AJ_P0061159 Iqcj protein_coding unknown_likely_coding MGP_AJ_T0060692.1 MGP_AJ_G0027146.1 mouse_genomes_project 3 38596021 38657962 + MGP_AJ_P0060692 Jade1 protein_coding protein_coding MGP_AJ_T0060693.1 MGP_AJ_G0027146.1 mouse_genomes_project 3 38596031 38634420 + MGP_AJ_P0060693 Jade1 protein_coding protein_coding MGP_AJ_T0060694.1 MGP_AJ_G0027146.1 mouse_genomes_project 3 38596050 38637259 + MGP_AJ_P0060694 Jade1 protein_coding protein_coding MGP_AJ_T0060695.1 MGP_AJ_G0027146.1 mouse_genomes_project 3 38603979 38657957 + MGP_AJ_P0060695 Jade1 protein_coding protein_coding MGP_AJ_T0060696.1 MGP_AJ_G0027146.1 mouse_genomes_project 3 38604021 38632373 + Jade1 protein_coding processed_transcript MGP_AJ_T0060697.1 MGP_AJ_G0027146.1 mouse_genomes_project 3 38604217 38655157 + MGP_AJ_P0060697 Jade1 protein_coding protein_coding MGP_AJ_T0060698.1 MGP_AJ_G0027146.1 mouse_genomes_project 3 38605464 38657210 + MGP_AJ_P0060698 Jade1 protein_coding protein_coding MGP_AJ_T0060699.1 MGP_AJ_G0027146.1 mouse_genomes_project 3 38605508 38632371 + Jade1 protein_coding processed_transcript MGP_AJ_T0060700.1 MGP_AJ_G0027146.1 mouse_genomes_project 3 38605530 38647796 + MGP_AJ_P0060700 Jade1 protein_coding protein_coding MGP_AJ_T0060701.1 MGP_AJ_G0027146.1 mouse_genomes_project 3 38621464 38629642 + Jade1 protein_coding retained_intron MGP_AJ_T0060702.1 MGP_AJ_G0027146.1 mouse_genomes_project 3 38632311 38640810 + Jade1 protein_coding retained_intron MGP_AJ_T0060703.1 MGP_AJ_G0027146.1 mouse_genomes_project 3 38634411 38645665 + Jade1 protein_coding retained_intron MGP_AJ_T0060704.1 MGP_AJ_G0027146.1 mouse_genomes_project 3 38637305 38645901 + MGP_AJ_P0060704 Jade1 protein_coding protein_coding MGP_AJ_T0060705.1 MGP_AJ_G0027146.1 mouse_genomes_project 3 38643530 38645908 + Jade1 protein_coding processed_transcript MGP_AJ_T0061859.1 MGP_AJ_G0027390.1 mouse_genomes_project 3 86491166 86492394 + Krtcap2 protein_coding retained_intron MGP_AJ_T0061860.1 MGP_AJ_G0027390.1 mouse_genomes_project 3 86491166 86495107 + MGP_AJ_P0061860 Krtcap2 protein_coding protein_coding MGP_AJ_T0061861.1 MGP_AJ_G0027390.1 mouse_genomes_project 3 86491634 86494910 + MGP_AJ_P0061861 Krtcap2 protein_coding protein_coding MGP_AJ_T0061862.1 MGP_AJ_G0027390.1 mouse_genomes_project 3 86494063 86494923 + Krtcap2 protein_coding retained_intron MGP_AJ_T0001180.1 MGP_AJ_G0001106.1 mouse_genomes_project 3 47737496 47741205 - TEC TEC MGP_AJ_T0007467.1 MGP_AJ_G0006117.1 mouse_genomes_project 3 12065356 12093541 + A930001A20Rik lincRNA lincRNA MGP_AJ_T0062640.1 MGP_AJ_G0027592.1 mouse_genomes_project 3 94475314 94477795 - MGP_AJ_P0062640 Nudt17 protein_coding protein_coding MGP_AJ_T0062641.1 MGP_AJ_G0027592.1 mouse_genomes_project 3 94475315 94476491 - Nudt17 protein_coding retained_intron MGP_AJ_T0062642.1 MGP_AJ_G0027592.1 mouse_genomes_project 3 94475316 94477810 - MGP_AJ_P0062642 Nudt17 protein_coding protein_coding MGP_AJ_T0062643.1 MGP_AJ_G0027592.1 mouse_genomes_project 3 94475415 94477787 - MGP_AJ_P0062643 Nudt17 protein_coding protein_coding MGP_AJ_T0061748.1 MGP_AJ_G0027375.1 mouse_genomes_project 3 86160960 86162869 - Dap3 protein_coding retained_intron MGP_AJ_T0061749.1 MGP_AJ_G0027375.1 mouse_genomes_project 3 86160960 86187265 - MGP_AJ_P0061749 Dap3 protein_coding protein_coding MGP_AJ_T0061750.1 MGP_AJ_G0027375.1 mouse_genomes_project 3 86161087 86168312 - MGP_AJ_P0061750 Dap3 protein_coding protein_coding MGP_AJ_T0061751.1 MGP_AJ_G0027375.1 mouse_genomes_project 3 86161123 86168345 - MGP_AJ_P0061751 Dap3 protein_coding protein_coding MGP_AJ_T0061752.1 MGP_AJ_G0027375.1 mouse_genomes_project 3 86161153 86187184 - MGP_AJ_P0061752 Dap3 protein_coding protein_coding MGP_AJ_T0061753.1 MGP_AJ_G0027375.1 mouse_genomes_project 3 86165800 86187612 - MGP_AJ_P0061753 Dap3 protein_coding protein_coding MGP_AJ_T0061754.1 MGP_AJ_G0027375.1 mouse_genomes_project 3 86165834 86188150 - MGP_AJ_P0061754 Dap3 protein_coding protein_coding MGP_AJ_T0061755.1 MGP_AJ_G0027375.1 mouse_genomes_project 3 86166769 86187585 - MGP_AJ_P0061755 Dap3 protein_coding protein_coding MGP_AJ_T0061756.1 MGP_AJ_G0027375.1 mouse_genomes_project 3 86166817 86187220 - MGP_AJ_P0061756 Dap3 protein_coding protein_coding MGP_AJ_T0061757.1 MGP_AJ_G0027375.1 mouse_genomes_project 3 86170909 86175828 - MGP_AJ_P0061757 Dap3 protein_coding protein_coding MGP_AJ_T0061758.1 MGP_AJ_G0027375.1 mouse_genomes_project 3 86186366 86188079 - Dap3 protein_coding processed_transcript MGP_AJ_T0001289.1 MGP_AJ_G0001213.1 mouse_genomes_project 3 108298055 108298822 - TEC TEC MGP_AJ_T0062061.1 MGP_AJ_G0027425.1 mouse_genomes_project 3 87577674 87651489 + MGP_AJ_P0062061 Gatad2b protein_coding protein_coding MGP_AJ_T0062062.1 MGP_AJ_G0027425.1 mouse_genomes_project 3 87577680 87639344 + Gatad2b protein_coding retained_intron MGP_AJ_T0062063.1 MGP_AJ_G0027425.1 mouse_genomes_project 3 87577942 87644905 + Gatad2b protein_coding retained_intron MGP_AJ_T0062064.1 MGP_AJ_G0027425.1 mouse_genomes_project 3 87578664 87645176 + MGP_AJ_P0062064 Gatad2b protein_coding protein_coding MGP_AJ_T0062065.1 MGP_AJ_G0027425.1 mouse_genomes_project 3 87627126 87629569 + Gatad2b protein_coding retained_intron MGP_AJ_T0062066.1 MGP_AJ_G0027425.1 mouse_genomes_project 3 87627751 87644912 + MGP_AJ_P0062066 Gatad2b protein_coding protein_coding MGP_AJ_T0062067.1 MGP_AJ_G0027425.1 mouse_genomes_project 3 87627753 87644871 + MGP_AJ_P0062067 Gatad2b protein_coding protein_coding MGP_AJ_T0062068.1 MGP_AJ_G0027425.1 mouse_genomes_project 3 87638209 87642926 + MGP_AJ_P0062068 Gatad2b protein_coding protein_coding MGP_AJ_T0061495.1 MGP_AJ_G0027330.1 mouse_genomes_project 3 84877823 84889488 - MGP_AJ_P0061495 Lrrc71 protein_coding protein_coding MGP_AJ_T0061496.1 MGP_AJ_G0027330.1 mouse_genomes_project 3 84878795 84889490 - Lrrc71 protein_coding retained_intron MGP_AJ_T0061497.1 MGP_AJ_G0027330.1 mouse_genomes_project 3 84878846 84879473 - Lrrc71 protein_coding processed_transcript MGP_AJ_T0061498.1 MGP_AJ_G0027330.1 mouse_genomes_project 3 84879886 84881953 - MGP_AJ_P0061498 Lrrc71 protein_coding protein_coding MGP_AJ_T0061499.1 MGP_AJ_G0027330.1 mouse_genomes_project 3 84879981 84889329 - MGP_AJ_P0061499 Lrrc71 protein_coding unknown_likely_coding MGP_AJ_T0061500.1 MGP_AJ_G0027330.1 mouse_genomes_project 3 84886147 84889459 - Lrrc71 protein_coding retained_intron MGP_AJ_T0060875.1 MGP_AJ_G0027178.1 mouse_genomes_project 3 51954564 51973475 - MGP_AJ_P0060875 Sertm1 protein_coding protein_coding MGP_AJ_T0060876.1 MGP_AJ_G0027178.1 mouse_genomes_project 3 51954567 51974331 - MGP_AJ_P0060876 Sertm1 protein_coding protein_coding MGP_AJ_T0064507.1 MGP_AJ_G0027969.1 mouse_genomes_project 3 155783001 155797190 + MGP_AJ_P0064507 Zranb2 protein_coding protein_coding MGP_AJ_T0064508.1 MGP_AJ_G0027969.1 mouse_genomes_project 3 155783200 155797116 + MGP_AJ_P0064508 Zranb2 protein_coding nonsense_mediated_decay MGP_AJ_T0064509.1 MGP_AJ_G0027969.1 mouse_genomes_project 3 155783200 155797116 + MGP_AJ_P0064509 Zranb2 protein_coding protein_coding MGP_AJ_T0064510.1 MGP_AJ_G0027969.1 mouse_genomes_project 3 155783217 155791986 + MGP_AJ_P0064510 Zranb2 protein_coding nonsense_mediated_decay MGP_AJ_T0064511.1 MGP_AJ_G0027969.1 mouse_genomes_project 3 155783229 155797156 + MGP_AJ_P0064511 Zranb2 protein_coding protein_coding MGP_AJ_T0064512.1 MGP_AJ_G0027969.1 mouse_genomes_project 3 155783266 155795703 + Zranb2 protein_coding retained_intron MGP_AJ_T0064513.1 MGP_AJ_G0027969.1 mouse_genomes_project 3 155787834 155790550 + Zranb2 protein_coding retained_intron MGP_AJ_T0064514.1 MGP_AJ_G0027969.1 mouse_genomes_project 3 155789435 155795583 + MGP_AJ_P0064514 Zranb2 protein_coding protein_coding MGP_AJ_T0063638.1 MGP_AJ_G0027814.1 mouse_genomes_project 3 123409176 123741470 + MGP_AJ_P0063638 Ndst4 protein_coding protein_coding MGP_AJ_T0063639.1 MGP_AJ_G0027814.1 mouse_genomes_project 3 123409190 123698881 + Ndst4 protein_coding retained_intron MGP_AJ_T0063640.1 MGP_AJ_G0027814.1 mouse_genomes_project 3 123573859 123623793 + MGP_AJ_P0063640 Ndst4 protein_coding protein_coding MGP_AJ_T0063641.1 MGP_AJ_G0027814.1 mouse_genomes_project 3 123693200 123740910 + MGP_AJ_P0063641 Ndst4 protein_coding protein_coding MGP_AJ_T0063642.1 MGP_AJ_G0027814.1 mouse_genomes_project 3 123693210 123703192 + Ndst4 protein_coding processed_transcript MGP_AJ_T0063643.1 MGP_AJ_G0027814.1 mouse_genomes_project 3 123722748 123737267 + MGP_AJ_P0063643 Ndst4 protein_coding protein_coding MGP_AJ_T0001184.1 MGP_AJ_G0001110.1 mouse_genomes_project 3 48244973 48247498 + TEC TEC MGP_AJ_T0062939.1 MGP_AJ_G0027661.1 mouse_genomes_project 3 101776758 101782821 + MGP_AJ_P0062939 Bcl2l15 protein_coding protein_coding MGP_AJ_T0062940.1 MGP_AJ_G0027661.1 mouse_genomes_project 3 101776928 101803855 + MGP_AJ_P0062940 Bcl2l15 protein_coding protein_coding MGP_AJ_T0062941.1 MGP_AJ_G0027661.1 mouse_genomes_project 3 101776989 101793813 + MGP_AJ_P0062941 Bcl2l15 protein_coding unknown_likely_coding MGP_AJ_T0062942.1 MGP_AJ_G0027661.1 mouse_genomes_project 3 101796127 101803063 + Bcl2l15 protein_coding processed_transcript MGP_AJ_T0062943.1 MGP_AJ_G0027661.1 mouse_genomes_project 3 101801199 101802896 + Bcl2l15 protein_coding processed_transcript MGP_AJ_T0063160.1 MGP_AJ_G0027716.1 mouse_genomes_project 3 105931794 105947520 + MGP_AJ_P0063160 Eps8l3 protein_coding protein_coding MGP_AJ_T0063161.1 MGP_AJ_G0027716.1 mouse_genomes_project 3 105931809 105935819 + Eps8l3 protein_coding processed_transcript MGP_AJ_T0063162.1 MGP_AJ_G0027716.1 mouse_genomes_project 3 105931827 105936195 + MGP_AJ_P0063162 Eps8l3 protein_coding protein_coding MGP_AJ_T0014066.1 MGP_AJ_G0012161.1 mouse_genomes_project 3 56477888 56479700 + processed_pseudogene processed_pseudogene MGP_AJ_T0001160.1 MGP_AJ_G0001086.1 mouse_genomes_project 3 35563330 35564511 - TEC TEC MGP_AJ_T0013891.1 MGP_AJ_G0011986.1 mouse_genomes_project 3 888698 889097 + processed_pseudogene processed_pseudogene MGP_AJ_T0014177.1 MGP_AJ_G0012272.1 mouse_genomes_project 3 90745695 90746359 + processed_pseudogene processed_pseudogene MGP_AJ_T0099815.1 MGP_AJ_G0037781.1 mouse_genomes_project 3 36801269 36801429 + Gm23796 snRNA snRNA MGP_AJ_T0013924.1 MGP_AJ_G0012019.1 mouse_genomes_project 3 9510759 9511126 - processed_pseudogene processed_pseudogene MGP_AJ_T0063987.1 MGP_AJ_G0027873.1 mouse_genomes_project 3 135676259 135680033 + Ddit4l protein_coding processed_transcript MGP_AJ_T0063988.1 MGP_AJ_G0027873.1 mouse_genomes_project 3 135678310 135682979 + MGP_AJ_P0063988 Ddit4l protein_coding protein_coding MGP_AJ_T0063989.1 MGP_AJ_G0027873.1 mouse_genomes_project 3 135678675 135680808 + MGP_AJ_P0063989 Ddit4l protein_coding protein_coding MGP_AJ_T0062146.1 MGP_AJ_G0027448.1 mouse_genomes_project 3 89484889 89502300 + MGP_AJ_P0062146 Pglyrp3 protein_coding protein_coding MGP_AJ_T0001221.1 MGP_AJ_G0001145.1 mouse_genomes_project 3 53184541 53186424 - TEC TEC MGP_AJ_T0014281.1 MGP_AJ_G0012376.1 mouse_genomes_project 3 118056050 118056858 + processed_pseudogene processed_pseudogene MGP_AJ_T0014055.1 MGP_AJ_G0012150.1 mouse_genomes_project 3 54311831 54312460 - processed_pseudogene processed_pseudogene MGP_AJ_T0062232.1 MGP_AJ_G0027509.1 mouse_genomes_project 3 92115992 92118248 - protein_coding retained_intron MGP_AJ_T0062233.1 MGP_AJ_G0027509.1 mouse_genomes_project 3 92116749 92120186 - MGP_AJ_P0062233 protein_coding protein_coding MGP_AJ_T0062234.1 MGP_AJ_G0027509.1 mouse_genomes_project 3 92116970 92127436 - MGP_AJ_P0062234 protein_coding protein_coding MGP_AJ_T0062235.1 MGP_AJ_G0027509.1 mouse_genomes_project 3 92116970 92127354 - MGP_AJ_P0062235 protein_coding protein_coding MGP_AJ_T0062236.1 MGP_AJ_G0027509.1 mouse_genomes_project 3 92116970 92118697 - MGP_AJ_P0062236 protein_coding protein_coding MGP_AJ_T0062237.1 MGP_AJ_G0027509.1 mouse_genomes_project 3 92116970 92120137 - MGP_AJ_P0062237 protein_coding protein_coding MGP_AJ_T0062238.1 MGP_AJ_G0027509.1 mouse_genomes_project 3 92116970 92120207 - MGP_AJ_P0062238 protein_coding protein_coding MGP_AJ_T0062239.1 MGP_AJ_G0027509.1 mouse_genomes_project 3 92118695 92120333 - protein_coding retained_intron MGP_AJ_T0060158.1 MGP_AJ_G0027052.1 mouse_genomes_project 3 16353452 16442578 - MGP_AJ_P0060158 Pde7a protein_coding protein_coding MGP_AJ_T0060159.1 MGP_AJ_G0027052.1 mouse_genomes_project 3 16355023 16395843 - MGP_AJ_P0060159 Pde7a protein_coding protein_coding MGP_AJ_T0060160.1 MGP_AJ_G0027052.1 mouse_genomes_project 3 16357726 16360370 - Pde7a protein_coding retained_intron MGP_AJ_T0060161.1 MGP_AJ_G0027052.1 mouse_genomes_project 3 16358063 16363872 - Pde7a protein_coding processed_transcript MGP_AJ_T0060162.1 MGP_AJ_G0027052.1 mouse_genomes_project 3 16360630 16391076 - MGP_AJ_P0060162 Pde7a protein_coding nonsense_mediated_decay MGP_AJ_T0060163.1 MGP_AJ_G0027052.1 mouse_genomes_project 3 16360702 16366877 - Pde7a protein_coding retained_intron MGP_AJ_T0060164.1 MGP_AJ_G0027052.1 mouse_genomes_project 3 16364147 16442309 - MGP_AJ_P0060164 Pde7a protein_coding nonsense_mediated_decay MGP_AJ_T0060165.1 MGP_AJ_G0027052.1 mouse_genomes_project 3 16366828 16395800 - MGP_AJ_P0060165 Pde7a protein_coding protein_coding MGP_AJ_T0060166.1 MGP_AJ_G0027052.1 mouse_genomes_project 3 16387528 16442561 - Pde7a protein_coding retained_intron MGP_AJ_T0060167.1 MGP_AJ_G0027052.1 mouse_genomes_project 3 16387626 16442160 - Pde7a protein_coding processed_transcript MGP_AJ_T0013940.1 MGP_AJ_G0012035.1 mouse_genomes_project 3 13223224 13223399 - processed_pseudogene processed_pseudogene MGP_AJ_T0063467.1 MGP_AJ_G0027782.1 mouse_genomes_project 3 115843288 115908578 - MGP_AJ_P0063467 Snx7 protein_coding protein_coding MGP_AJ_T0063468.1 MGP_AJ_G0027782.1 mouse_genomes_project 3 115843414 115931280 - MGP_AJ_P0063468 Snx7 protein_coding protein_coding MGP_AJ_T0063469.1 MGP_AJ_G0027782.1 mouse_genomes_project 3 115843414 115931364 - MGP_AJ_P0063469 Snx7 protein_coding protein_coding MGP_AJ_T0063470.1 MGP_AJ_G0027782.1 mouse_genomes_project 3 115888746 115892939 - Snx7 protein_coding retained_intron MGP_AJ_T0004276.1 MGP_AJ_G0003754.1 mouse_genomes_project 3 85957386 85979291 - antisense antisense MGP_AJ_T0102528.1 MGP_AJ_G0040270.1 mouse_genomes_project 3 56536765 56537030 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0062124.1 MGP_AJ_G0027437.1 mouse_genomes_project 3 87886572 87887887 + MGP_AJ_P0062124 S100a2 protein_coding protein_coding MGP_AJ_T0062294.1 MGP_AJ_G0027520.1 mouse_genomes_project 3 92666931 92672736 + protein_coding retained_intron MGP_AJ_T0062295.1 MGP_AJ_G0027520.1 mouse_genomes_project 3 92666933 92672698 + MGP_AJ_P0062295 protein_coding protein_coding MGP_AJ_T0062296.1 MGP_AJ_G0027520.1 mouse_genomes_project 3 92667024 92672705 + MGP_AJ_P0062296 protein_coding protein_coding MGP_AJ_T0001143.1 MGP_AJ_G0001069.1 mouse_genomes_project 3 31230247 31235581 + TEC TEC MGP_AJ_T0007741.1 MGP_AJ_G0006329.1 mouse_genomes_project 3 141152473 141203684 + Gm43614 lincRNA lincRNA MGP_AJ_T0099014.1 MGP_AJ_G0036991.1 mouse_genomes_project 3 142259472 142261563 - Gm43445 sense_intronic sense_intronic MGP_AJ_T0001348.1 MGP_AJ_G0001271.1 mouse_genomes_project 3 128665373 128668222 + TEC TEC MGP_AJ_T0062476.1 MGP_AJ_G0027551.1 mouse_genomes_project 3 93487219 93492640 - MGP_AJ_P0062476 Ecm1 protein_coding protein_coding MGP_AJ_T0062477.1 MGP_AJ_G0027551.1 mouse_genomes_project 3 93487220 93492638 - MGP_AJ_P0062477 Ecm1 protein_coding protein_coding MGP_AJ_T0062478.1 MGP_AJ_G0027551.1 mouse_genomes_project 3 93487221 93488091 - Ecm1 protein_coding retained_intron MGP_AJ_T0062479.1 MGP_AJ_G0027551.1 mouse_genomes_project 3 93489209 93492620 - MGP_AJ_P0062479 Ecm1 protein_coding protein_coding MGP_AJ_T0062480.1 MGP_AJ_G0027551.1 mouse_genomes_project 3 93489221 93492638 - MGP_AJ_P0062480 Ecm1 protein_coding protein_coding MGP_AJ_T0062481.1 MGP_AJ_G0027551.1 mouse_genomes_project 3 93489282 93492640 - MGP_AJ_P0062481 Ecm1 protein_coding protein_coding MGP_AJ_T0062482.1 MGP_AJ_G0027551.1 mouse_genomes_project 3 93489670 93492615 - MGP_AJ_P0062482 Ecm1 protein_coding protein_coding MGP_AJ_T0062483.1 MGP_AJ_G0027551.1 mouse_genomes_project 3 93489831 93492620 - MGP_AJ_P0062483 Ecm1 protein_coding protein_coding MGP_AJ_T0062484.1 MGP_AJ_G0027551.1 mouse_genomes_project 3 93490420 93491294 - Ecm1 protein_coding retained_intron MGP_AJ_T0062485.1 MGP_AJ_G0027551.1 mouse_genomes_project 3 93490954 93492640 - MGP_AJ_P0062485 Ecm1 protein_coding protein_coding MGP_AJ_T0098989.1 MGP_AJ_G0036966.1 mouse_genomes_project 3 102030781 102031849 - 9530097N15Rik sense_intronic sense_intronic MGP_AJ_T0064175.1 MGP_AJ_G0027915.1 mouse_genomes_project 3 143111418 143140289 - MGP_AJ_P0064175 Clca1 protein_coding protein_coding MGP_AJ_T0064176.1 MGP_AJ_G0027915.1 mouse_genomes_project 3 143112158 143116775 - Clca1 protein_coding processed_transcript MGP_AJ_T0064177.1 MGP_AJ_G0027915.1 mouse_genomes_project 3 143121562 143126486 - Clca1 protein_coding processed_transcript MGP_AJ_T0101173.1 MGP_AJ_G0039139.1 mouse_genomes_project 3 151920791 151920907 + Gm22206 snoRNA snoRNA MGP_AJ_T0061315.1 MGP_AJ_G0027282.1 mouse_genomes_project 3 77936895 78007745 - MGP_AJ_P0061315 Glrb protein_coding protein_coding MGP_AJ_T0061316.1 MGP_AJ_G0027282.1 mouse_genomes_project 3 77936896 78007699 - MGP_AJ_P0061316 Glrb protein_coding nonsense_mediated_decay MGP_AJ_T0061317.1 MGP_AJ_G0027282.1 mouse_genomes_project 3 77938257 78006176 - MGP_AJ_P0061317 Glrb protein_coding protein_coding MGP_AJ_T0061318.1 MGP_AJ_G0027282.1 mouse_genomes_project 3 77948828 78007613 - MGP_AJ_P0061318 Glrb protein_coding protein_coding MGP_AJ_T0061319.1 MGP_AJ_G0027282.1 mouse_genomes_project 3 77948835 77950455 - Glrb protein_coding retained_intron MGP_AJ_T0061320.1 MGP_AJ_G0027282.1 mouse_genomes_project 3 77955309 78007674 - MGP_AJ_P0061320 Glrb protein_coding nonsense_mediated_decay MGP_AJ_T0060059.1 MGP_AJ_G0027019.1 mouse_genomes_project 3 6012716 6102233 - MGP_AJ_P0060059 Tpd52 protein_coding protein_coding MGP_AJ_T0060060.1 MGP_AJ_G0027019.1 mouse_genomes_project 3 6015749 6101988 - MGP_AJ_P0060060 Tpd52 protein_coding protein_coding MGP_AJ_T0060061.1 MGP_AJ_G0027019.1 mouse_genomes_project 3 6017563 6055940 - MGP_AJ_P0060061 Tpd52 protein_coding protein_coding MGP_AJ_T0060062.1 MGP_AJ_G0027019.1 mouse_genomes_project 3 6017564 6090616 - MGP_AJ_P0060062 Tpd52 protein_coding protein_coding MGP_AJ_T0060063.1 MGP_AJ_G0027019.1 mouse_genomes_project 3 6017628 6101949 - MGP_AJ_P0060063 Tpd52 protein_coding protein_coding MGP_AJ_T0060064.1 MGP_AJ_G0027019.1 mouse_genomes_project 3 6017736 6054181 - MGP_AJ_P0060064 Tpd52 protein_coding protein_coding MGP_AJ_T0060065.1 MGP_AJ_G0027019.1 mouse_genomes_project 3 6017811 6101988 - MGP_AJ_P0060065 Tpd52 protein_coding protein_coding MGP_AJ_T0060066.1 MGP_AJ_G0027019.1 mouse_genomes_project 3 6017837 6101933 - MGP_AJ_P0060066 Tpd52 protein_coding protein_coding MGP_AJ_T0060067.1 MGP_AJ_G0027019.1 mouse_genomes_project 3 6036733 6101947 - Tpd52 protein_coding processed_transcript MGP_AJ_T0060068.1 MGP_AJ_G0027019.1 mouse_genomes_project 3 6036795 6101988 - MGP_AJ_P0060068 Tpd52 protein_coding nonsense_mediated_decay MGP_AJ_T0013896.1 MGP_AJ_G0011991.1 mouse_genomes_project 3 1499712 1500142 - processed_pseudogene processed_pseudogene MGP_AJ_T0063112.1 MGP_AJ_G0027701.1 mouse_genomes_project 3 105215177 105227768 + MGP_AJ_P0063112 Kcna10 protein_coding protein_coding MGP_AJ_T0063113.1 MGP_AJ_G0027701.1 mouse_genomes_project 3 105215265 105219447 + Kcna10 protein_coding processed_transcript MGP_AJ_T0064400.1 MGP_AJ_G0027951.1 mouse_genomes_project 3 150583983 150662826 + MGP_AJ_P0064400 Zzz3 protein_coding protein_coding MGP_AJ_T0064401.1 MGP_AJ_G0027951.1 mouse_genomes_project 3 150584035 150617999 + Zzz3 protein_coding retained_intron MGP_AJ_T0064402.1 MGP_AJ_G0027951.1 mouse_genomes_project 3 150584513 150666262 + MGP_AJ_P0064402 Zzz3 protein_coding protein_coding MGP_AJ_T0064403.1 MGP_AJ_G0027951.1 mouse_genomes_project 3 150584542 150639373 + Zzz3 protein_coding processed_transcript MGP_AJ_T0064404.1 MGP_AJ_G0027951.1 mouse_genomes_project 3 150584589 150639071 + Zzz3 protein_coding processed_transcript MGP_AJ_T0064405.1 MGP_AJ_G0027951.1 mouse_genomes_project 3 150584641 150662904 + MGP_AJ_P0064405 Zzz3 protein_coding protein_coding MGP_AJ_T0064406.1 MGP_AJ_G0027951.1 mouse_genomes_project 3 150585188 150662829 + MGP_AJ_P0064406 Zzz3 protein_coding protein_coding MGP_AJ_T0064407.1 MGP_AJ_G0027951.1 mouse_genomes_project 3 150585198 150666262 + MGP_AJ_P0064407 Zzz3 protein_coding protein_coding MGP_AJ_T0064408.1 MGP_AJ_G0027951.1 mouse_genomes_project 3 150626022 150629276 + Zzz3 protein_coding retained_intron MGP_AJ_T0064409.1 MGP_AJ_G0027951.1 mouse_genomes_project 3 150660643 150662049 + Zzz3 protein_coding processed_transcript MGP_AJ_T0063917.1 MGP_AJ_G0027863.1 mouse_genomes_project 3 133370554 133395557 + MGP_AJ_P0063917 Slc9b1 protein_coding protein_coding MGP_AJ_T0063918.1 MGP_AJ_G0027863.1 mouse_genomes_project 3 133370559 133421128 + MGP_AJ_P0063918 Slc9b1 protein_coding protein_coding MGP_AJ_T0063919.1 MGP_AJ_G0027863.1 mouse_genomes_project 3 133370571 133380707 + Slc9b1 protein_coding retained_intron MGP_AJ_T0063920.1 MGP_AJ_G0027863.1 mouse_genomes_project 3 133370571 133380946 + Slc9b1 protein_coding retained_intron MGP_AJ_T0063921.1 MGP_AJ_G0027863.1 mouse_genomes_project 3 133370583 133416384 + Slc9b1 protein_coding processed_transcript MGP_AJ_T0063922.1 MGP_AJ_G0027863.1 mouse_genomes_project 3 133370855 133398240 + Slc9b1 protein_coding retained_intron MGP_AJ_T0063923.1 MGP_AJ_G0027863.1 mouse_genomes_project 3 133396499 133398003 + Slc9b1 protein_coding retained_intron MGP_AJ_T0063924.1 MGP_AJ_G0027863.1 mouse_genomes_project 3 133406302 133421125 + MGP_AJ_P0063924 Slc9b1 protein_coding nonsense_mediated_decay MGP_AJ_T0063925.1 MGP_AJ_G0027863.1 mouse_genomes_project 3 133417304 133421125 + Slc9b1 protein_coding processed_transcript MGP_AJ_T0010529.1 MGP_AJ_G0008651.1 mouse_genomes_project 3 87554130 87554194 + Mir7012 miRNA miRNA MGP_AJ_T0062505.1 MGP_AJ_G0027553.1 mouse_genomes_project 3 93513371 93571507 - MGP_AJ_P0062505 Rprd2 protein_coding protein_coding MGP_AJ_T0062506.1 MGP_AJ_G0027553.1 mouse_genomes_project 3 93513374 93571514 - MGP_AJ_P0062506 Rprd2 protein_coding protein_coding MGP_AJ_T0062507.1 MGP_AJ_G0027553.1 mouse_genomes_project 3 93523551 93529773 - Rprd2 protein_coding retained_intron MGP_AJ_T0062508.1 MGP_AJ_G0027553.1 mouse_genomes_project 3 93525249 93571534 - MGP_AJ_P0062508 Rprd2 protein_coding protein_coding MGP_AJ_T0062509.1 MGP_AJ_G0027553.1 mouse_genomes_project 3 93526064 93529751 - Rprd2 protein_coding processed_transcript MGP_AJ_T0062510.1 MGP_AJ_G0027553.1 mouse_genomes_project 3 93536807 93571619 - Rprd2 protein_coding retained_intron MGP_AJ_T0063840.1 MGP_AJ_G0027847.1 mouse_genomes_project 3 129551405 129631184 + MGP_AJ_P0063840 Papss1 protein_coding protein_coding MGP_AJ_T0063841.1 MGP_AJ_G0027847.1 mouse_genomes_project 3 129551502 129631183 + MGP_AJ_P0063841 Papss1 protein_coding nonsense_mediated_decay MGP_AJ_T0063842.1 MGP_AJ_G0027847.1 mouse_genomes_project 3 129551533 129631183 + MGP_AJ_P0063842 Papss1 protein_coding protein_coding MGP_AJ_T0063843.1 MGP_AJ_G0027847.1 mouse_genomes_project 3 129551536 129631184 + MGP_AJ_P0063843 Papss1 protein_coding protein_coding MGP_AJ_T0063844.1 MGP_AJ_G0027847.1 mouse_genomes_project 3 129551572 129570663 + MGP_AJ_P0063844 Papss1 protein_coding nonsense_mediated_decay MGP_AJ_T0001133.1 MGP_AJ_G0001059.1 mouse_genomes_project 3 27629752 27631831 - TEC TEC MGP_AJ_T0004219.1 MGP_AJ_G0003712.1 mouse_genomes_project 3 30226310 30289739 + 4930419G24Rik antisense antisense MGP_AJ_T0101131.1 MGP_AJ_G0039097.1 mouse_genomes_project 3 74276482 74276559 - Gm23644 snoRNA snoRNA MGP_AJ_T0007662.1 MGP_AJ_G0006264.1 mouse_genomes_project 3 105068384 105084113 + AI504432 lincRNA lincRNA MGP_AJ_T0060148.1 MGP_AJ_G0027049.1 mouse_genomes_project 3 15167373 15344768 - MGP_AJ_P0060148 Cyp7b1 protein_coding unknown_likely_coding MGP_AJ_T0099851.1 MGP_AJ_G0037817.1 mouse_genomes_project 3 87475014 87475119 + Gm24185 snRNA snRNA MGP_AJ_T0001362.1 MGP_AJ_G0001285.1 mouse_genomes_project 3 133689438 133693335 - TEC TEC MGP_AJ_T0010505.1 MGP_AJ_G0008627.1 mouse_genomes_project 3 31788860 31788939 + Mir1897 miRNA miRNA MGP_AJ_T0060150.1 MGP_AJ_G0027051.1 mouse_genomes_project 3 16316982 16345883 + MGP_AJ_P0060150 Mtfr1 protein_coding protein_coding MGP_AJ_T0060151.1 MGP_AJ_G0027051.1 mouse_genomes_project 3 16316984 16350065 + MGP_AJ_P0060151 Mtfr1 protein_coding protein_coding MGP_AJ_T0060152.1 MGP_AJ_G0027051.1 mouse_genomes_project 3 16317002 16349596 + MGP_AJ_P0060152 Mtfr1 protein_coding protein_coding MGP_AJ_T0060153.1 MGP_AJ_G0027051.1 mouse_genomes_project 3 16317765 16351163 + MGP_AJ_P0060153 Mtfr1 protein_coding protein_coding MGP_AJ_T0060154.1 MGP_AJ_G0027051.1 mouse_genomes_project 3 16317920 16349782 + MGP_AJ_P0060154 Mtfr1 protein_coding nonsense_mediated_decay MGP_AJ_T0060155.1 MGP_AJ_G0027051.1 mouse_genomes_project 3 16317929 16345892 + MGP_AJ_P0060155 Mtfr1 protein_coding nonsense_mediated_decay MGP_AJ_T0060156.1 MGP_AJ_G0027051.1 mouse_genomes_project 3 16317969 16341748 + MGP_AJ_P0060156 Mtfr1 protein_coding protein_coding MGP_AJ_T0060157.1 MGP_AJ_G0027051.1 mouse_genomes_project 3 16341768 16346410 + Mtfr1 protein_coding retained_intron MGP_AJ_T0014179.1 MGP_AJ_G0012274.1 mouse_genomes_project 3 90865101 90865923 + processed_pseudogene processed_pseudogene MGP_AJ_T0007458.1 MGP_AJ_G0006111.1 mouse_genomes_project 3 6858701 6889068 + Gm16337 lincRNA lincRNA MGP_AJ_T0060599.1 MGP_AJ_G0027129.1 mouse_genomes_project 3 34463244 34472148 + MGP_AJ_P0060599 Bbs12 protein_coding protein_coding MGP_AJ_T0060600.1 MGP_AJ_G0027129.1 mouse_genomes_project 3 34463246 34472151 + MGP_AJ_P0060600 Bbs12 protein_coding protein_coding MGP_AJ_T0060898.1 MGP_AJ_G0027183.1 mouse_genomes_project 3 52302458 52602351 + MGP_AJ_P0060898 Dclk1 protein_coding protein_coding MGP_AJ_T0060899.1 MGP_AJ_G0027183.1 mouse_genomes_project 3 52302620 52602347 + MGP_AJ_P0060899 Dclk1 protein_coding protein_coding MGP_AJ_T0060900.1 MGP_AJ_G0027183.1 mouse_genomes_project 3 52302620 52533432 + MGP_AJ_P0060900 Dclk1 protein_coding protein_coding MGP_AJ_T0060901.1 MGP_AJ_G0027183.1 mouse_genomes_project 3 52307245 52316596 + MGP_AJ_P0060901 Dclk1 protein_coding protein_coding MGP_AJ_T0060902.1 MGP_AJ_G0027183.1 mouse_genomes_project 3 52307453 52316566 + Dclk1 protein_coding retained_intron MGP_AJ_T0060903.1 MGP_AJ_G0027183.1 mouse_genomes_project 3 52415024 52540116 + Dclk1 protein_coding processed_transcript MGP_AJ_T0060904.1 MGP_AJ_G0027183.1 mouse_genomes_project 3 52512963 52542749 + Dclk1 protein_coding retained_intron MGP_AJ_T0060905.1 MGP_AJ_G0027183.1 mouse_genomes_project 3 52523805 52533434 + MGP_AJ_P0060905 Dclk1 protein_coding protein_coding MGP_AJ_T0060906.1 MGP_AJ_G0027183.1 mouse_genomes_project 3 52523835 52602347 + MGP_AJ_P0060906 Dclk1 protein_coding protein_coding MGP_AJ_T0060907.1 MGP_AJ_G0027183.1 mouse_genomes_project 3 52523976 52599782 + MGP_AJ_P0060907 Dclk1 protein_coding protein_coding MGP_AJ_T0060908.1 MGP_AJ_G0027183.1 mouse_genomes_project 3 52523993 52598365 + MGP_AJ_P0060908 Dclk1 protein_coding protein_coding MGP_AJ_T0060909.1 MGP_AJ_G0027183.1 mouse_genomes_project 3 52523993 52599781 + MGP_AJ_P0060909 Dclk1 protein_coding protein_coding MGP_AJ_T0060910.1 MGP_AJ_G0027183.1 mouse_genomes_project 3 52523993 52580430 + MGP_AJ_P0060910 Dclk1 protein_coding protein_coding MGP_AJ_T0060911.1 MGP_AJ_G0027183.1 mouse_genomes_project 3 52524049 52585512 + MGP_AJ_P0060911 Dclk1 protein_coding protein_coding MGP_AJ_T0060913.1 MGP_AJ_G0027183.1 mouse_genomes_project 3 52591108 52597542 + Dclk1 protein_coding processed_transcript MGP_AJ_T0004413.1 MGP_AJ_G0003845.1 mouse_genomes_project 3 155152794 155169512 - Gm15577 antisense antisense MGP_AJ_T0060082.1 MGP_AJ_G0027026.1 mouse_genomes_project 3 7320575 7324177 - MGP_AJ_P0060082 protein_coding protein_coding MGP_AJ_T0060083.1 MGP_AJ_G0027026.1 mouse_genomes_project 3 7320577 7324238 - MGP_AJ_P0060083 protein_coding protein_coding MGP_AJ_T0060084.1 MGP_AJ_G0027026.1 mouse_genomes_project 3 7320580 7324177 - MGP_AJ_P0060084 protein_coding protein_coding MGP_AJ_T0061771.1 MGP_AJ_G0027379.1 mouse_genomes_project 3 86333234 86341598 - MGP_AJ_P0061771 Fdps protein_coding protein_coding MGP_AJ_T0061772.1 MGP_AJ_G0027379.1 mouse_genomes_project 3 86333234 86341527 - MGP_AJ_P0061772 Fdps protein_coding protein_coding MGP_AJ_T0061773.1 MGP_AJ_G0027379.1 mouse_genomes_project 3 86333395 86335326 - MGP_AJ_P0061773 Fdps protein_coding protein_coding MGP_AJ_T0061774.1 MGP_AJ_G0027379.1 mouse_genomes_project 3 86334702 86335630 - Fdps protein_coding retained_intron MGP_AJ_T0061775.1 MGP_AJ_G0027379.1 mouse_genomes_project 3 86335010 86340954 - MGP_AJ_P0061775 Fdps protein_coding protein_coding MGP_AJ_T0061776.1 MGP_AJ_G0027379.1 mouse_genomes_project 3 86335245 86341491 - MGP_AJ_P0061776 Fdps protein_coding protein_coding MGP_AJ_T0061777.1 MGP_AJ_G0027379.1 mouse_genomes_project 3 86338576 86341530 - Fdps protein_coding retained_intron MGP_AJ_T0014365.1 MGP_AJ_G0012460.1 mouse_genomes_project 3 143872084 143872524 - processed_pseudogene processed_pseudogene MGP_AJ_T0062155.1 MGP_AJ_G0027455.1 mouse_genomes_project 3 89839410 89841501 + MGP_AJ_P0062155 Sprr2b protein_coding protein_coding MGP_AJ_T0061003.1 MGP_AJ_G0027207.1 mouse_genomes_project 3 56368872 56396057 - MGP_AJ_P0061003 Igsf10 protein_coding protein_coding MGP_AJ_T0061004.1 MGP_AJ_G0027207.1 mouse_genomes_project 3 56370062 56395960 - MGP_AJ_P0061004 Igsf10 protein_coding protein_coding MGP_AJ_T0061005.1 MGP_AJ_G0027207.1 mouse_genomes_project 3 56370062 56396195 - MGP_AJ_P0061005 Igsf10 protein_coding protein_coding MGP_AJ_T0061006.1 MGP_AJ_G0027207.1 mouse_genomes_project 3 56391571 56396057 - MGP_AJ_P0061006 Igsf10 protein_coding protein_coding MGP_AJ_T0063144.1 MGP_AJ_G0027713.1 mouse_genomes_project 3 105674752 105676505 + MGP_AJ_P0063144 Gm10961 protein_coding protein_coding MGP_AJ_T0060397.1 MGP_AJ_G0027098.1 mouse_genomes_project 3 29695710 29706289 + MGP_AJ_P0060397 Zfp639 protein_coding protein_coding MGP_AJ_T0060398.1 MGP_AJ_G0027098.1 mouse_genomes_project 3 29695986 29706199 + MGP_AJ_P0060398 Zfp639 protein_coding protein_coding MGP_AJ_T0060399.1 MGP_AJ_G0027098.1 mouse_genomes_project 3 29696115 29705022 + MGP_AJ_P0060399 Zfp639 protein_coding protein_coding MGP_AJ_T0060400.1 MGP_AJ_G0027098.1 mouse_genomes_project 3 29696347 29698627 + Zfp639 protein_coding processed_transcript MGP_AJ_T0060401.1 MGP_AJ_G0027098.1 mouse_genomes_project 3 29697629 29705085 + Zfp639 protein_coding retained_intron MGP_AJ_T0060402.1 MGP_AJ_G0027098.1 mouse_genomes_project 3 29698451 29705024 + MGP_AJ_P0060402 Zfp639 protein_coding protein_coding MGP_AJ_T0060403.1 MGP_AJ_G0027098.1 mouse_genomes_project 3 29700750 29706141 + MGP_AJ_P0060403 Zfp639 protein_coding protein_coding MGP_AJ_T0060404.1 MGP_AJ_G0027098.1 mouse_genomes_project 3 29702535 29705973 + MGP_AJ_P0060404 Zfp639 protein_coding protein_coding MGP_AJ_T0060405.1 MGP_AJ_G0027098.1 mouse_genomes_project 3 29704254 29705016 + Zfp639 protein_coding retained_intron MGP_AJ_T0007444.1 MGP_AJ_G0006103.1 mouse_genomes_project 3 1925835 1927099 + 1110015O18Rik lincRNA lincRNA MGP_AJ_T0007445.1 MGP_AJ_G0006103.1 mouse_genomes_project 3 1926985 1943181 + 1110015O18Rik lincRNA lincRNA MGP_AJ_T0007446.1 MGP_AJ_G0006103.1 mouse_genomes_project 3 1927770 1942245 + 1110015O18Rik lincRNA lincRNA MGP_AJ_T0001153.1 MGP_AJ_G0001079.1 mouse_genomes_project 3 34638665 34644469 + TEC TEC MGP_AJ_T0014131.1 MGP_AJ_G0012226.1 mouse_genomes_project 3 75023428 75023800 - processed_pseudogene processed_pseudogene MGP_AJ_T0014226.1 MGP_AJ_G0012321.1 mouse_genomes_project 3 101108379 101109134 - processed_pseudogene processed_pseudogene MGP_AJ_T0101165.1 MGP_AJ_G0039131.1 mouse_genomes_project 3 126601812 126601921 + Gm22293 snoRNA snoRNA MGP_AJ_T0063527.1 MGP_AJ_G0027792.1 mouse_genomes_project 3 119842225 119899111 - MGP_AJ_P0063527 Abcd3 protein_coding protein_coding MGP_AJ_T0063528.1 MGP_AJ_G0027792.1 mouse_genomes_project 3 119842358 119899247 - MGP_AJ_P0063528 Abcd3 protein_coding protein_coding MGP_AJ_T0063529.1 MGP_AJ_G0027792.1 mouse_genomes_project 3 119843207 119899111 - MGP_AJ_P0063529 Abcd3 protein_coding nonsense_mediated_decay MGP_AJ_T0063530.1 MGP_AJ_G0027792.1 mouse_genomes_project 3 119849815 119852280 - Abcd3 protein_coding retained_intron MGP_AJ_T0063531.1 MGP_AJ_G0027792.1 mouse_genomes_project 3 119869626 119898854 - Abcd3 protein_coding processed_transcript MGP_AJ_T0063532.1 MGP_AJ_G0027792.1 mouse_genomes_project 3 119879490 119899142 - Abcd3 protein_coding retained_intron MGP_AJ_T0062800.1 MGP_AJ_G0027634.1 mouse_genomes_project 3 99304796 99307254 + Igsf3 protein_coding retained_intron MGP_AJ_T0062801.1 MGP_AJ_G0027634.1 mouse_genomes_project 3 99304796 99391952 + MGP_AJ_P0062801 Igsf3 protein_coding protein_coding MGP_AJ_T0062802.1 MGP_AJ_G0027634.1 mouse_genomes_project 3 99306051 99389043 + MGP_AJ_P0062802 Igsf3 protein_coding protein_coding MGP_AJ_T0062127.1 MGP_AJ_G0027438.1 mouse_genomes_project 3 87898406 87902420 + MGP_AJ_P0062127 Gm42674 protein_coding nonsense_mediated_decay MGP_AJ_T0001249.1 MGP_AJ_G0001173.1 mouse_genomes_project 3 74856313 74857952 - TEC TEC MGP_AJ_T0062276.1 MGP_AJ_G0027517.1 mouse_genomes_project 3 92558132 92604626 + MGP_AJ_P0062276 Pogz protein_coding protein_coding MGP_AJ_T0062277.1 MGP_AJ_G0027517.1 mouse_genomes_project 3 92558262 92583831 + Pogz protein_coding processed_transcript MGP_AJ_T0062278.1 MGP_AJ_G0027517.1 mouse_genomes_project 3 92558278 92588738 + Pogz protein_coding retained_intron MGP_AJ_T0062279.1 MGP_AJ_G0027517.1 mouse_genomes_project 3 92558278 92604624 + MGP_AJ_P0062279 Pogz protein_coding protein_coding MGP_AJ_T0062280.1 MGP_AJ_G0027517.1 mouse_genomes_project 3 92558278 92602632 + MGP_AJ_P0062280 Pogz protein_coding protein_coding MGP_AJ_T0062281.1 MGP_AJ_G0027517.1 mouse_genomes_project 3 92558278 92603175 + MGP_AJ_P0062281 Pogz protein_coding protein_coding MGP_AJ_T0062282.1 MGP_AJ_G0027517.1 mouse_genomes_project 3 92585965 92586788 + Pogz protein_coding retained_intron MGP_AJ_T0062283.1 MGP_AJ_G0027517.1 mouse_genomes_project 3 92586756 92594599 + MGP_AJ_P0062283 Pogz protein_coding nonsense_mediated_decay MGP_AJ_T0062284.1 MGP_AJ_G0027517.1 mouse_genomes_project 3 92593608 92596048 + Pogz protein_coding processed_transcript MGP_AJ_T0062285.1 MGP_AJ_G0027517.1 mouse_genomes_project 3 92599954 92601266 + Pogz protein_coding retained_intron MGP_AJ_T0007657.1 MGP_AJ_G0006261.1 mouse_genomes_project 3 103674324 103675571 - Gm43848 lincRNA lincRNA MGP_AJ_T0001378.1 MGP_AJ_G0001301.1 mouse_genomes_project 3 150357333 150358448 + TEC TEC MGP_AJ_T0017969.1 MGP_AJ_G0015488.1 mouse_genomes_project 3 92752598 92754050 + 4930481B07Rik processed_transcript lincRNA MGP_AJ_T0017970.1 MGP_AJ_G0015488.1 mouse_genomes_project 3 92753222 92757126 + 4930481B07Rik processed_transcript processed_transcript MGP_AJ_T0014189.1 MGP_AJ_G0012284.1 mouse_genomes_project 3 93159746 93160146 - processed_pseudogene processed_pseudogene MGP_AJ_T0098977.1 MGP_AJ_G0036954.1 mouse_genomes_project 3 99525168 99526486 - Gm42941 sense_intronic sense_intronic MGP_AJ_T0064326.1 MGP_AJ_G0027943.1 mouse_genomes_project 3 149932087 149945531 - MGP_AJ_P0064326 Ifi44l protein_coding unknown_likely_coding MGP_AJ_T0064327.1 MGP_AJ_G0027943.1 mouse_genomes_project 3 149932096 149936357 - MGP_AJ_P0064327 Ifi44l protein_coding protein_coding MGP_AJ_T0063856.1 MGP_AJ_G0027851.1 mouse_genomes_project 3 130682183 130839998 + MGP_AJ_P0063856 Tbck protein_coding protein_coding MGP_AJ_T0063857.1 MGP_AJ_G0027851.1 mouse_genomes_project 3 130682207 130697272 + Tbck protein_coding retained_intron MGP_AJ_T0063858.1 MGP_AJ_G0027851.1 mouse_genomes_project 3 130682239 130798698 + Tbck protein_coding processed_transcript MGP_AJ_T0063859.1 MGP_AJ_G0027851.1 mouse_genomes_project 3 130788773 130836805 + Tbck protein_coding processed_transcript MGP_AJ_T0001233.1 MGP_AJ_G0001157.1 mouse_genomes_project 3 62735340 62736289 - TEC TEC MGP_AJ_T0063145.1 MGP_AJ_G0027714.1 mouse_genomes_project 3 105706518 105721169 - MGP_AJ_P0063145 Ahcyl1 protein_coding nonsense_mediated_decay MGP_AJ_T0063146.1 MGP_AJ_G0027714.1 mouse_genomes_project 3 105706520 105739952 - MGP_AJ_P0063146 Ahcyl1 protein_coding protein_coding MGP_AJ_T0063147.1 MGP_AJ_G0027714.1 mouse_genomes_project 3 105707353 105708997 - Ahcyl1 protein_coding processed_transcript MGP_AJ_T0063148.1 MGP_AJ_G0027714.1 mouse_genomes_project 3 105707883 105713975 - Ahcyl1 protein_coding retained_intron MGP_AJ_T0063149.1 MGP_AJ_G0027714.1 mouse_genomes_project 3 105708792 105710884 - Ahcyl1 protein_coding retained_intron MGP_AJ_T0063150.1 MGP_AJ_G0027714.1 mouse_genomes_project 3 105711650 105712910 - Ahcyl1 protein_coding retained_intron MGP_AJ_T0063151.1 MGP_AJ_G0027714.1 mouse_genomes_project 3 105714548 105739355 - MGP_AJ_P0063151 Ahcyl1 protein_coding protein_coding MGP_AJ_T0063152.1 MGP_AJ_G0027714.1 mouse_genomes_project 3 105715136 105739897 - Ahcyl1 protein_coding retained_intron MGP_AJ_T0004362.1 MGP_AJ_G0003807.1 mouse_genomes_project 3 120659634 120669314 + Gm43569 antisense antisense MGP_AJ_T0063273.1 MGP_AJ_G0027743.1 mouse_genomes_project 3 106727033 106751883 + MGP_AJ_P0063273 Clcc1 protein_coding protein_coding MGP_AJ_T0063274.1 MGP_AJ_G0027743.1 mouse_genomes_project 3 106727069 106736042 + Clcc1 protein_coding processed_transcript MGP_AJ_T0063275.1 MGP_AJ_G0027743.1 mouse_genomes_project 3 106727077 106741121 + Clcc1 protein_coding processed_transcript MGP_AJ_T0063276.1 MGP_AJ_G0027743.1 mouse_genomes_project 3 106727078 106751879 + MGP_AJ_P0063276 Clcc1 protein_coding protein_coding MGP_AJ_T0063277.1 MGP_AJ_G0027743.1 mouse_genomes_project 3 106727078 106736591 + MGP_AJ_P0063277 Clcc1 protein_coding protein_coding MGP_AJ_T0063278.1 MGP_AJ_G0027743.1 mouse_genomes_project 3 106727110 106751055 + MGP_AJ_P0063278 Clcc1 protein_coding protein_coding MGP_AJ_T0063279.1 MGP_AJ_G0027743.1 mouse_genomes_project 3 106736234 106741871 + Clcc1 protein_coding processed_transcript MGP_AJ_T0063280.1 MGP_AJ_G0027743.1 mouse_genomes_project 3 106740894 106741877 + Clcc1 protein_coding retained_intron MGP_AJ_T0004371.1 MGP_AJ_G0003814.1 mouse_genomes_project 3 125881813 125883556 + Gm43653 antisense antisense MGP_AJ_T0061220.1 MGP_AJ_G0027260.1 mouse_genomes_project 3 67011922 67066234 - MGP_AJ_P0061220 Sptssb protein_coding protein_coding MGP_AJ_T0061221.1 MGP_AJ_G0027260.1 mouse_genomes_project 3 67012958 67066216 - MGP_AJ_P0061221 Sptssb protein_coding protein_coding MGP_AJ_T0060355.1 MGP_AJ_G0027088.1 mouse_genomes_project 3 27990858 28015137 + Gpr160 protein_coding retained_intron MGP_AJ_T0060356.1 MGP_AJ_G0027088.1 mouse_genomes_project 3 27990858 28034663 + MGP_AJ_P0060356 Gpr160 protein_coding protein_coding MGP_AJ_T0060357.1 MGP_AJ_G0027088.1 mouse_genomes_project 3 27990858 28034663 + MGP_AJ_P0060357 Gpr160 protein_coding protein_coding MGP_AJ_T0060358.1 MGP_AJ_G0027088.1 mouse_genomes_project 3 27990858 28034665 + MGP_AJ_P0060358 Gpr160 protein_coding protein_coding MGP_AJ_T0060359.1 MGP_AJ_G0027088.1 mouse_genomes_project 3 27990897 28034663 + MGP_AJ_P0060359 Gpr160 protein_coding protein_coding MGP_AJ_T0060360.1 MGP_AJ_G0027088.1 mouse_genomes_project 3 27990901 28033265 + MGP_AJ_P0060360 Gpr160 protein_coding protein_coding MGP_AJ_T0060361.1 MGP_AJ_G0027088.1 mouse_genomes_project 3 27990923 28034663 + MGP_AJ_P0060361 Gpr160 protein_coding protein_coding MGP_AJ_T0060362.1 MGP_AJ_G0027088.1 mouse_genomes_project 3 27991051 28033294 + MGP_AJ_P0060362 Gpr160 protein_coding protein_coding MGP_AJ_T0013986.1 MGP_AJ_G0012081.1 mouse_genomes_project 3 32664529 32664965 + processed_pseudogene processed_pseudogene MGP_AJ_T0013893.1 MGP_AJ_G0011988.1 mouse_genomes_project 3 930371 931145 + processed_pseudogene processed_pseudogene MGP_AJ_T0007462.1 MGP_AJ_G0006115.1 mouse_genomes_project 3 10589963 10591101 + lincRNA lincRNA MGP_AJ_T0007463.1 MGP_AJ_G0006115.1 mouse_genomes_project 3 10589990 10591102 + lincRNA lincRNA MGP_AJ_T0007464.1 MGP_AJ_G0006115.1 mouse_genomes_project 3 10590036 10590889 + lincRNA lincRNA MGP_AJ_T0007465.1 MGP_AJ_G0006115.1 mouse_genomes_project 3 10590214 10592905 + lincRNA lincRNA MGP_AJ_T0014127.1 MGP_AJ_G0012222.1 mouse_genomes_project 3 73190154 73190944 - processed_pseudogene processed_pseudogene MGP_AJ_T0001278.1 MGP_AJ_G0001202.1 mouse_genomes_project 3 95926854 95929917 + TEC TEC MGP_AJ_T0014291.1 MGP_AJ_G0012386.1 mouse_genomes_project 3 120962139 120962599 + processed_pseudogene processed_pseudogene MGP_AJ_T0014074.1 MGP_AJ_G0012169.1 mouse_genomes_project 3 57965296 57965865 - processed_pseudogene processed_pseudogene MGP_AJ_T0007702.1 MGP_AJ_G0006295.1 mouse_genomes_project 3 126754520 126756538 - 4933424H11Rik lincRNA lincRNA MGP_AJ_T0010552.1 MGP_AJ_G0008674.1 mouse_genomes_project 3 125587579 125588708 + miRNA miRNA MGP_AJ_T0063848.1 MGP_AJ_G0027850.1 mouse_genomes_project 3 130658453 130681924 - MGP_AJ_P0063848 Aimp1 protein_coding protein_coding MGP_AJ_T0063849.1 MGP_AJ_G0027850.1 mouse_genomes_project 3 130669816 130672856 - Aimp1 protein_coding retained_intron MGP_AJ_T0063850.1 MGP_AJ_G0027850.1 mouse_genomes_project 3 130670079 130675279 - Aimp1 protein_coding retained_intron MGP_AJ_T0063851.1 MGP_AJ_G0027850.1 mouse_genomes_project 3 130672085 130682410 - MGP_AJ_P0063851 Aimp1 protein_coding protein_coding MGP_AJ_T0063852.1 MGP_AJ_G0027850.1 mouse_genomes_project 3 130672175 130682162 - MGP_AJ_P0063852 Aimp1 protein_coding protein_coding MGP_AJ_T0063853.1 MGP_AJ_G0027850.1 mouse_genomes_project 3 130672191 130681877 - MGP_AJ_P0063853 Aimp1 protein_coding protein_coding MGP_AJ_T0063854.1 MGP_AJ_G0027850.1 mouse_genomes_project 3 130672886 130682164 - MGP_AJ_P0063854 Aimp1 protein_coding protein_coding MGP_AJ_T0063855.1 MGP_AJ_G0027850.1 mouse_genomes_project 3 130677918 130681876 - Aimp1 protein_coding retained_intron MGP_AJ_T0061954.1 MGP_AJ_G0027411.1 mouse_genomes_project 3 87087669 87115074 + MGP_AJ_P0061954 She protein_coding protein_coding MGP_AJ_T0061955.1 MGP_AJ_G0027411.1 mouse_genomes_project 3 87094027 87095504 + She protein_coding retained_intron MGP_AJ_T0101101.1 MGP_AJ_G0039067.1 mouse_genomes_project 3 1676419 1676552 - Gm22944 snoRNA snoRNA MGP_AJ_T0061081.1 MGP_AJ_G0027225.1 mouse_genomes_project 3 61139561 61199290 + MGP_AJ_P0061081 Gmps protein_coding protein_coding MGP_AJ_T0061082.1 MGP_AJ_G0027225.1 mouse_genomes_project 3 61139739 61190539 + MGP_AJ_P0061082 Gmps protein_coding unknown_likely_coding MGP_AJ_T0004353.1 MGP_AJ_G0003800.1 mouse_genomes_project 3 114141812 114154547 + Gm43109 antisense antisense MGP_AJ_T0060348.1 MGP_AJ_G0027086.1 mouse_genomes_project 3 27878915 27899886 + MGP_AJ_P0060348 Samd7 protein_coding nonsense_mediated_decay MGP_AJ_T0060349.1 MGP_AJ_G0027086.1 mouse_genomes_project 3 27878962 27899894 + MGP_AJ_P0060349 Samd7 protein_coding protein_coding MGP_AJ_T0060350.1 MGP_AJ_G0027086.1 mouse_genomes_project 3 27883663 27898230 + MGP_AJ_P0060350 Samd7 protein_coding nonsense_mediated_decay MGP_AJ_T0060351.1 MGP_AJ_G0027086.1 mouse_genomes_project 3 27888913 27890152 + Samd7 protein_coding retained_intron MGP_AJ_T0004243.1 MGP_AJ_G0003730.1 mouse_genomes_project 3 52116101 52145172 + 4931419H13Rik antisense antisense MGP_AJ_T0007775.1 MGP_AJ_G0006356.1 mouse_genomes_project 3 147699744 147804095 - Gm31121 lincRNA lincRNA MGP_AJ_T0101154.1 MGP_AJ_G0039120.1 mouse_genomes_project 3 106504371 106504495 + Gm22942 snoRNA snoRNA MGP_AJ_T0061489.1 MGP_AJ_G0027329.1 mouse_genomes_project 3 84758635 84840171 + Arhgef11 protein_coding retained_intron MGP_AJ_T0061490.1 MGP_AJ_G0027329.1 mouse_genomes_project 3 84758651 84878934 + MGP_AJ_P0061490 Arhgef11 protein_coding protein_coding MGP_AJ_T0061491.1 MGP_AJ_G0027329.1 mouse_genomes_project 3 84758661 84876810 + MGP_AJ_P0061491 Arhgef11 protein_coding protein_coding MGP_AJ_T0061492.1 MGP_AJ_G0027329.1 mouse_genomes_project 3 84758668 84858334 + Arhgef11 protein_coding retained_intron MGP_AJ_T0061493.1 MGP_AJ_G0027329.1 mouse_genomes_project 3 84758668 84878003 + MGP_AJ_P0061493 Arhgef11 protein_coding unknown_likely_coding MGP_AJ_T0061494.1 MGP_AJ_G0027329.1 mouse_genomes_project 3 84759177 84878935 + MGP_AJ_P0061494 Arhgef11 protein_coding nonsense_mediated_decay MGP_AJ_T0014142.1 MGP_AJ_G0012237.1 mouse_genomes_project 3 77492961 77493279 - processed_pseudogene processed_pseudogene MGP_AJ_T0062161.1 MGP_AJ_G0027460.1 mouse_genomes_project 3 89930903 89932184 + MGP_AJ_P0062161 Sprr2i protein_coding protein_coding MGP_AJ_T0010494.1 MGP_AJ_G0008616.1 mouse_genomes_project 3 648564 648656 + Gm23237 miRNA miRNA MGP_AJ_T0099807.1 MGP_AJ_G0037773.1 mouse_genomes_project 3 5527650 5527757 + Gm24614 snRNA snRNA MGP_AJ_T0014047.1 MGP_AJ_G0012142.1 mouse_genomes_project 3 49989144 49989463 - processed_pseudogene processed_pseudogene MGP_AJ_T0007761.1 MGP_AJ_G0006346.1 mouse_genomes_project 3 143772522 143774691 + Gm17501 lincRNA lincRNA MGP_AJ_T0007762.1 MGP_AJ_G0006346.1 mouse_genomes_project 3 143774311 143800882 + Gm17501 lincRNA lincRNA MGP_AJ_T0060637.1 MGP_AJ_G0027137.1 mouse_genomes_project 3 37646230 37669924 + MGP_AJ_P0060637 Intu protein_coding protein_coding MGP_AJ_T0060638.1 MGP_AJ_G0027137.1 mouse_genomes_project 3 37655707 37719858 + MGP_AJ_P0060638 Intu protein_coding protein_coding MGP_AJ_T0060639.1 MGP_AJ_G0027137.1 mouse_genomes_project 3 37688115 37707994 + MGP_AJ_P0060639 Intu protein_coding protein_coding MGP_AJ_T0060676.1 MGP_AJ_G0027144.1 mouse_genomes_project 3 37997732 38025525 + MGP_AJ_P0060676 Larp1b protein_coding protein_coding MGP_AJ_T0060677.1 MGP_AJ_G0027144.1 mouse_genomes_project 3 37998170 38024989 + MGP_AJ_P0060677 Larp1b protein_coding protein_coding MGP_AJ_T0060678.1 MGP_AJ_G0027144.1 mouse_genomes_project 3 37998196 38009586 + MGP_AJ_P0060678 Larp1b protein_coding protein_coding MGP_AJ_T0060679.1 MGP_AJ_G0027144.1 mouse_genomes_project 3 38008989 38011393 + Larp1b protein_coding processed_transcript MGP_AJ_T0060680.1 MGP_AJ_G0027144.1 mouse_genomes_project 3 38009526 38025142 + MGP_AJ_P0060680 Larp1b protein_coding protein_coding MGP_AJ_T0060681.1 MGP_AJ_G0027144.1 mouse_genomes_project 3 38011338 38059691 + MGP_AJ_P0060681 Larp1b protein_coding nonsense_mediated_decay MGP_AJ_T0060682.1 MGP_AJ_G0027144.1 mouse_genomes_project 3 38018994 38024736 + Larp1b protein_coding processed_transcript MGP_AJ_T0060683.1 MGP_AJ_G0027144.1 mouse_genomes_project 3 38058401 38087784 + Larp1b protein_coding processed_transcript MGP_AJ_T0060684.1 MGP_AJ_G0027144.1 mouse_genomes_project 3 38069169 38087840 + Larp1b protein_coding retained_intron MGP_AJ_T0060685.1 MGP_AJ_G0027144.1 mouse_genomes_project 3 38071063 38086937 + Larp1b protein_coding processed_transcript MGP_AJ_T0060686.1 MGP_AJ_G0027144.1 mouse_genomes_project 3 38071741 38086373 + MGP_AJ_P0060686 Larp1b protein_coding protein_coding MGP_AJ_T0060687.1 MGP_AJ_G0027144.1 mouse_genomes_project 3 38080796 38081522 + Larp1b protein_coding processed_transcript MGP_AJ_T0060688.1 MGP_AJ_G0027144.1 mouse_genomes_project 3 38080815 38087804 + Larp1b protein_coding processed_transcript MGP_AJ_T0060689.1 MGP_AJ_G0027144.1 mouse_genomes_project 3 38084014 38085895 + Larp1b protein_coding processed_transcript MGP_AJ_T0061821.1 MGP_AJ_G0027386.1 mouse_genomes_project 3 86448934 86453748 - MGP_AJ_P0061821 Mtx1 protein_coding protein_coding MGP_AJ_T0061822.1 MGP_AJ_G0027386.1 mouse_genomes_project 3 86448936 86454285 - MGP_AJ_P0061822 Mtx1 protein_coding protein_coding MGP_AJ_T0061823.1 MGP_AJ_G0027386.1 mouse_genomes_project 3 86448941 86450190 - MGP_AJ_P0061823 Mtx1 protein_coding protein_coding MGP_AJ_T0061824.1 MGP_AJ_G0027386.1 mouse_genomes_project 3 86448942 86449520 - Mtx1 protein_coding retained_intron MGP_AJ_T0061825.1 MGP_AJ_G0027386.1 mouse_genomes_project 3 86448942 86449948 - Mtx1 protein_coding processed_transcript MGP_AJ_T0061826.1 MGP_AJ_G0027386.1 mouse_genomes_project 3 86448942 86454212 - MGP_AJ_P0061826 Mtx1 protein_coding protein_coding MGP_AJ_T0061827.1 MGP_AJ_G0027386.1 mouse_genomes_project 3 86448944 86449975 - MGP_AJ_P0061827 Mtx1 protein_coding nonsense_mediated_decay MGP_AJ_T0061828.1 MGP_AJ_G0027386.1 mouse_genomes_project 3 86448947 86453762 - MGP_AJ_P0061828 Mtx1 protein_coding protein_coding MGP_AJ_T0061829.1 MGP_AJ_G0027386.1 mouse_genomes_project 3 86449068 86453695 - MGP_AJ_P0061829 Mtx1 protein_coding protein_coding MGP_AJ_T0061830.1 MGP_AJ_G0027386.1 mouse_genomes_project 3 86449183 86453767 - MGP_AJ_P0061830 Mtx1 protein_coding nonsense_mediated_decay MGP_AJ_T0061831.1 MGP_AJ_G0027386.1 mouse_genomes_project 3 86449211 86472224 - MGP_AJ_P0061831 Mtx1 protein_coding protein_coding MGP_AJ_T0061832.1 MGP_AJ_G0027386.1 mouse_genomes_project 3 86449269 86450690 - Mtx1 protein_coding retained_intron MGP_AJ_T0061833.1 MGP_AJ_G0027386.1 mouse_genomes_project 3 86449501 86450577 - Mtx1 protein_coding retained_intron MGP_AJ_T0061834.1 MGP_AJ_G0027386.1 mouse_genomes_project 3 86449598 86453717 - Mtx1 protein_coding retained_intron MGP_AJ_T0061835.1 MGP_AJ_G0027386.1 mouse_genomes_project 3 86449885 86453740 - MGP_AJ_P0061835 Mtx1 protein_coding nonsense_mediated_decay MGP_AJ_T0061836.1 MGP_AJ_G0027386.1 mouse_genomes_project 3 86450113 86453732 - Mtx1 protein_coding retained_intron MGP_AJ_T0061837.1 MGP_AJ_G0027386.1 mouse_genomes_project 3 86450529 86453681 - MGP_AJ_P0061837 Mtx1 protein_coding nonsense_mediated_decay MGP_AJ_T0061844.1 MGP_AJ_G0027386.1 mouse_genomes_project 3 86469271 86472260 - Mtx1 protein_coding processed_transcript MGP_AJ_T0014070.1 MGP_AJ_G0012165.1 mouse_genomes_project 3 56855787 56856187 - processed_pseudogene processed_pseudogene MGP_AJ_T0063600.1 MGP_AJ_G0027806.1 mouse_genomes_project 3 121180819 121218350 - MGP_AJ_P0063600 Synpo2 protein_coding protein_coding MGP_AJ_T0063601.1 MGP_AJ_G0027806.1 mouse_genomes_project 3 121180819 121335788 - MGP_AJ_P0063601 Synpo2 protein_coding protein_coding MGP_AJ_T0063602.1 MGP_AJ_G0027806.1 mouse_genomes_project 3 121180819 121335737 - MGP_AJ_P0063602 Synpo2 protein_coding protein_coding MGP_AJ_T0063603.1 MGP_AJ_G0027806.1 mouse_genomes_project 3 121211388 121335788 - MGP_AJ_P0063603 Synpo2 protein_coding protein_coding MGP_AJ_T0063604.1 MGP_AJ_G0027806.1 mouse_genomes_project 3 121213471 121218526 - MGP_AJ_P0063604 Synpo2 protein_coding protein_coding MGP_AJ_T0063605.1 MGP_AJ_G0027806.1 mouse_genomes_project 3 121216496 121220215 - MGP_AJ_P0063605 Synpo2 protein_coding protein_coding MGP_AJ_T0063606.1 MGP_AJ_G0027806.1 mouse_genomes_project 3 121282220 121335790 - Synpo2 protein_coding processed_transcript MGP_AJ_T0004295.1 MGP_AJ_G0003768.1 mouse_genomes_project 3 92959345 92968674 + Gm16740 antisense antisense MGP_AJ_T0007666.1 MGP_AJ_G0006267.1 mouse_genomes_project 3 106071407 106082462 - Gm12498 lincRNA lincRNA MGP_AJ_T0001309.1 MGP_AJ_G0001233.1 mouse_genomes_project 3 120109450 120112672 + TEC TEC MGP_AJ_T0010503.1 MGP_AJ_G0008625.1 mouse_genomes_project 3 28180653 28180716 + Mir7008 miRNA miRNA MGP_AJ_T0061901.1 MGP_AJ_G0027399.1 mouse_genomes_project 3 86623946 86633490 - MGP_AJ_P0061901 Zbtb7b protein_coding protein_coding MGP_AJ_T0061902.1 MGP_AJ_G0027399.1 mouse_genomes_project 3 86623946 86639599 - MGP_AJ_P0061902 Zbtb7b protein_coding protein_coding MGP_AJ_T0061903.1 MGP_AJ_G0027399.1 mouse_genomes_project 3 86623946 86638369 - MGP_AJ_P0061903 Zbtb7b protein_coding protein_coding MGP_AJ_T0061904.1 MGP_AJ_G0027399.1 mouse_genomes_project 3 86623946 86633972 - MGP_AJ_P0061904 Zbtb7b protein_coding protein_coding MGP_AJ_T0061905.1 MGP_AJ_G0027399.1 mouse_genomes_project 3 86627440 86640745 - MGP_AJ_P0061905 Zbtb7b protein_coding protein_coding MGP_AJ_T0061906.1 MGP_AJ_G0027399.1 mouse_genomes_project 3 86627724 86640702 - MGP_AJ_P0061906 Zbtb7b protein_coding protein_coding MGP_AJ_T0061907.1 MGP_AJ_G0027399.1 mouse_genomes_project 3 86638812 86641843 - Zbtb7b protein_coding processed_transcript MGP_AJ_T0060500.1 MGP_AJ_G0027112.1 mouse_genomes_project 3 33024442 33060943 - MGP_AJ_P0060500 Dcun1d1 protein_coding nonsense_mediated_decay MGP_AJ_T0060501.1 MGP_AJ_G0027112.1 mouse_genomes_project 3 33024752 33060894 - MGP_AJ_P0060501 Dcun1d1 protein_coding protein_coding MGP_AJ_T0060502.1 MGP_AJ_G0027112.1 mouse_genomes_project 3 33024778 33049326 - MGP_AJ_P0060502 Dcun1d1 protein_coding nonsense_mediated_decay MGP_AJ_T0060503.1 MGP_AJ_G0027112.1 mouse_genomes_project 3 33026343 33060441 - MGP_AJ_P0060503 Dcun1d1 protein_coding protein_coding MGP_AJ_T0060504.1 MGP_AJ_G0027112.1 mouse_genomes_project 3 33026407 33038072 - Dcun1d1 protein_coding processed_transcript MGP_AJ_T0060505.1 MGP_AJ_G0027112.1 mouse_genomes_project 3 33037370 33060922 - Dcun1d1 protein_coding processed_transcript MGP_AJ_T0060506.1 MGP_AJ_G0027112.1 mouse_genomes_project 3 33044293 33060931 - Dcun1d1 protein_coding retained_intron MGP_AJ_T0060507.1 MGP_AJ_G0027112.1 mouse_genomes_project 3 33047145 33058226 - MGP_AJ_P0060507 Dcun1d1 protein_coding protein_coding MGP_AJ_T0060508.1 MGP_AJ_G0027112.1 mouse_genomes_project 3 33047148 33065538 - MGP_AJ_P0060508 Dcun1d1 protein_coding protein_coding MGP_AJ_T0060509.1 MGP_AJ_G0027112.1 mouse_genomes_project 3 33056639 33059565 - Dcun1d1 protein_coding retained_intron MGP_AJ_T0013902.1 MGP_AJ_G0011997.1 mouse_genomes_project 3 3589809 3590791 - processed_pseudogene processed_pseudogene MGP_AJ_T0001208.1 MGP_AJ_G0001132.1 mouse_genomes_project 3 50103696 50106769 - TEC TEC MGP_AJ_T0001148.1 MGP_AJ_G0001074.1 mouse_genomes_project 3 33083506 33084296 - TEC TEC MGP_AJ_T0062164.1 MGP_AJ_G0027463.1 mouse_genomes_project 3 89954979 89956323 + MGP_AJ_P0062164 Sprr2k protein_coding protein_coding MGP_AJ_T0010531.1 MGP_AJ_G0008653.1 mouse_genomes_project 3 90967228 90967366 + Gm44353 miRNA miRNA MGP_AJ_T0102017.1 MGP_AJ_G0039825.1 mouse_genomes_project 3 142970056 142999276 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_AJ_T0102018.1 MGP_AJ_G0039825.1 mouse_genomes_project 3 142988851 143005542 - transcribed_unprocessed_pseudogene retained_intron MGP_AJ_T0017953.1 MGP_AJ_G0015481.1 mouse_genomes_project 3 49212423 49213808 + Gm38132 processed_transcript lincRNA MGP_AJ_T0017954.1 MGP_AJ_G0015481.1 mouse_genomes_project 3 49212452 49213465 + Gm38132 processed_transcript retained_intron MGP_AJ_T0007598.1 MGP_AJ_G0006217.1 mouse_genomes_project 3 80509318 80511700 + Gm38096 lincRNA lincRNA MGP_AJ_T0014139.1 MGP_AJ_G0012234.1 mouse_genomes_project 3 75999336 75999889 - processed_pseudogene processed_pseudogene MGP_AJ_T0063281.1 MGP_AJ_G0027744.1 mouse_genomes_project 3 106751680 106795331 - MGP_AJ_P0063281 Gpsm2 protein_coding protein_coding MGP_AJ_T0063282.1 MGP_AJ_G0027744.1 mouse_genomes_project 3 106774457 106775547 - Gpsm2 protein_coding retained_intron MGP_AJ_T0063283.1 MGP_AJ_G0027744.1 mouse_genomes_project 3 106774873 106784692 - MGP_AJ_P0063283 Gpsm2 protein_coding protein_coding MGP_AJ_T0063284.1 MGP_AJ_G0027744.1 mouse_genomes_project 3 106776009 106795138 - Gpsm2 protein_coding processed_transcript MGP_AJ_T0060218.1 MGP_AJ_G0027063.1 mouse_genomes_project 3 17450681 17504959 - MGP_AJ_P0060218 Agtr1b protein_coding protein_coding MGP_AJ_T0060219.1 MGP_AJ_G0027063.1 mouse_genomes_project 3 17451105 17504906 - MGP_AJ_P0060219 Agtr1b protein_coding protein_coding MGP_AJ_T0099889.1 MGP_AJ_G0037855.1 mouse_genomes_project 3 155482520 155482627 - Gm23725 snRNA snRNA MGP_AJ_T0064365.1 MGP_AJ_G0027948.1 mouse_genomes_project 3 150430668 150460420 - MGP_AJ_P0064365 Nexn protein_coding protein_coding MGP_AJ_T0064366.1 MGP_AJ_G0027948.1 mouse_genomes_project 3 150430668 150459869 - MGP_AJ_P0064366 Nexn protein_coding protein_coding MGP_AJ_T0064367.1 MGP_AJ_G0027948.1 mouse_genomes_project 3 150430737 150459877 - MGP_AJ_P0064367 Nexn protein_coding protein_coding MGP_AJ_T0064368.1 MGP_AJ_G0027948.1 mouse_genomes_project 3 150431374 150442333 - MGP_AJ_P0064368 Nexn protein_coding protein_coding MGP_AJ_T0064369.1 MGP_AJ_G0027948.1 mouse_genomes_project 3 150431638 150449433 - MGP_AJ_P0064369 Nexn protein_coding protein_coding MGP_AJ_T0064370.1 MGP_AJ_G0027948.1 mouse_genomes_project 3 150432239 150438815 - Nexn protein_coding processed_transcript MGP_AJ_T0064371.1 MGP_AJ_G0027948.1 mouse_genomes_project 3 150436728 150438125 - Nexn protein_coding retained_intron MGP_AJ_T0064372.1 MGP_AJ_G0027948.1 mouse_genomes_project 3 150437944 150459870 - MGP_AJ_P0064372 Nexn protein_coding protein_coding MGP_AJ_T0064373.1 MGP_AJ_G0027948.1 mouse_genomes_project 3 150438000 150449487 - MGP_AJ_P0064373 Nexn protein_coding protein_coding MGP_AJ_T0064374.1 MGP_AJ_G0027948.1 mouse_genomes_project 3 150442089 150442533 - Nexn protein_coding retained_intron MGP_AJ_T0064375.1 MGP_AJ_G0027948.1 mouse_genomes_project 3 150442100 150459897 - MGP_AJ_P0064375 Nexn protein_coding nonsense_mediated_decay MGP_AJ_T0064376.1 MGP_AJ_G0027948.1 mouse_genomes_project 3 150442131 150457608 - MGP_AJ_P0064376 Nexn protein_coding protein_coding MGP_AJ_T0064377.1 MGP_AJ_G0027948.1 mouse_genomes_project 3 150442149 150455637 - MGP_AJ_P0064377 Nexn protein_coding protein_coding MGP_AJ_T0064378.1 MGP_AJ_G0027948.1 mouse_genomes_project 3 150442251 150456632 - MGP_AJ_P0064378 Nexn protein_coding protein_coding MGP_AJ_T0064379.1 MGP_AJ_G0027948.1 mouse_genomes_project 3 150446578 150460452 - Nexn protein_coding retained_intron MGP_AJ_T0064380.1 MGP_AJ_G0027948.1 mouse_genomes_project 3 150446791 150447160 - Nexn protein_coding retained_intron MGP_AJ_T0013987.1 MGP_AJ_G0012082.1 mouse_genomes_project 3 32995219 32996208 + processed_pseudogene processed_pseudogene MGP_AJ_T0060490.1 MGP_AJ_G0027111.1 mouse_genomes_project 3 32872718 32874626 + Atp11b protein_coding retained_intron MGP_AJ_T0060491.1 MGP_AJ_G0027111.1 mouse_genomes_project 3 32872746 32946214 + Atp11b protein_coding processed_transcript MGP_AJ_T0060492.1 MGP_AJ_G0027111.1 mouse_genomes_project 3 32872746 32972827 + Atp11b protein_coding retained_intron MGP_AJ_T0060493.1 MGP_AJ_G0027111.1 mouse_genomes_project 3 32872746 32972832 + MGP_AJ_P0060493 Atp11b protein_coding protein_coding MGP_AJ_T0060494.1 MGP_AJ_G0027111.1 mouse_genomes_project 3 32904650 32923476 + MGP_AJ_P0060494 Atp11b protein_coding protein_coding MGP_AJ_T0060495.1 MGP_AJ_G0027111.1 mouse_genomes_project 3 32906141 32972830 + MGP_AJ_P0060495 Atp11b protein_coding protein_coding MGP_AJ_T0060496.1 MGP_AJ_G0027111.1 mouse_genomes_project 3 32924349 32926789 + Atp11b protein_coding processed_transcript MGP_AJ_T0060497.1 MGP_AJ_G0027111.1 mouse_genomes_project 3 32943569 32945715 + Atp11b protein_coding retained_intron MGP_AJ_T0060498.1 MGP_AJ_G0027111.1 mouse_genomes_project 3 32955268 32972827 + Atp11b protein_coding retained_intron MGP_AJ_T0060499.1 MGP_AJ_G0027111.1 mouse_genomes_project 3 32955601 32972832 + MGP_AJ_P0060499 Atp11b protein_coding protein_coding MGP_AJ_T0014196.1 MGP_AJ_G0012291.1 mouse_genomes_project 3 93846905 93847091 + processed_pseudogene processed_pseudogene MGP_AJ_T0101178.1 MGP_AJ_G0039144.1 mouse_genomes_project 3 152129640 152129720 - Snord45c snoRNA snoRNA MGP_AJ_T0007686.1 MGP_AJ_G0006283.1 mouse_genomes_project 3 119709325 119717872 - A730020M07Rik lincRNA lincRNA MGP_AJ_T0007687.1 MGP_AJ_G0006283.1 mouse_genomes_project 3 119711515 119717875 - A730020M07Rik lincRNA lincRNA MGP_AJ_T0007688.1 MGP_AJ_G0006283.1 mouse_genomes_project 3 119711517 119717757 - A730020M07Rik lincRNA lincRNA MGP_AJ_T0001337.1 MGP_AJ_G0001261.1 mouse_genomes_project 3 125768212 125770198 - TEC TEC MGP_AJ_T0001256.1 MGP_AJ_G0001180.1 mouse_genomes_project 3 83005970 83007510 + TEC TEC MGP_AJ_T0011540.1 MGP_AJ_G0009662.1 mouse_genomes_project 3 69505039 69505130 + Gm27465 misc_RNA misc_RNA MGP_AJ_T0014168.1 MGP_AJ_G0012263.1 mouse_genomes_project 3 88330707 88331010 + processed_pseudogene processed_pseudogene MGP_AJ_T0017988.1 MGP_AJ_G0015497.1 mouse_genomes_project 3 113905023 113911820 - A930005H10Rik processed_transcript antisense MGP_AJ_T0017989.1 MGP_AJ_G0015497.1 mouse_genomes_project 3 113905023 113911856 - A930005H10Rik processed_transcript antisense MGP_AJ_T0017990.1 MGP_AJ_G0015497.1 mouse_genomes_project 3 113905025 113911679 - A930005H10Rik processed_transcript antisense MGP_AJ_T0017991.1 MGP_AJ_G0015497.1 mouse_genomes_project 3 113905228 113911830 - A930005H10Rik processed_transcript antisense MGP_AJ_T0017992.1 MGP_AJ_G0015497.1 mouse_genomes_project 3 113909725 113911823 - A930005H10Rik processed_transcript retained_intron MGP_AJ_T0017993.1 MGP_AJ_G0015497.1 mouse_genomes_project 3 113909824 113911614 - A930005H10Rik processed_transcript retained_intron MGP_AJ_T0017994.1 MGP_AJ_G0015497.1 mouse_genomes_project 3 113911548 113911856 - A930005H10Rik processed_transcript processed_transcript MGP_AJ_T0014349.1 MGP_AJ_G0012444.1 mouse_genomes_project 3 138134892 138136273 - processed_pseudogene processed_pseudogene MGP_AJ_T0062314.1 MGP_AJ_G0027522.1 mouse_genomes_project 3 92711557 92743816 + MGP_AJ_P0062314 Pi4kb protein_coding protein_coding MGP_AJ_T0062315.1 MGP_AJ_G0027522.1 mouse_genomes_project 3 92711657 92743139 + MGP_AJ_P0062315 Pi4kb protein_coding protein_coding MGP_AJ_T0062316.1 MGP_AJ_G0027522.1 mouse_genomes_project 3 92711702 92743135 + MGP_AJ_P0062316 Pi4kb protein_coding protein_coding MGP_AJ_T0062317.1 MGP_AJ_G0027522.1 mouse_genomes_project 3 92712942 92743754 + MGP_AJ_P0062317 Pi4kb protein_coding protein_coding MGP_AJ_T0062318.1 MGP_AJ_G0027522.1 mouse_genomes_project 3 92712969 92732757 + MGP_AJ_P0062318 Pi4kb protein_coding protein_coding MGP_AJ_T0062319.1 MGP_AJ_G0027522.1 mouse_genomes_project 3 92735741 92743168 + MGP_AJ_P0062319 Pi4kb protein_coding protein_coding MGP_AJ_T0062320.1 MGP_AJ_G0027522.1 mouse_genomes_project 3 92741302 92743236 + Pi4kb protein_coding processed_transcript MGP_AJ_T0001219.1 MGP_AJ_G0001143.1 mouse_genomes_project 3 53084547 53086560 - TEC TEC MGP_AJ_T0014355.1 MGP_AJ_G0012450.1 mouse_genomes_project 3 140209524 140209864 - processed_pseudogene processed_pseudogene MGP_AJ_T0001252.1 MGP_AJ_G0001176.1 mouse_genomes_project 3 77234936 77237261 + TEC TEC MGP_AJ_T0101111.1 MGP_AJ_G0039077.1 mouse_genomes_project 3 30583371 30583514 - Gm24780 snoRNA snoRNA MGP_AJ_T0017960.1 MGP_AJ_G0015485.1 mouse_genomes_project 3 85350406 85353265 + AW047730 processed_transcript processed_transcript MGP_AJ_T0017961.1 MGP_AJ_G0015485.1 mouse_genomes_project 3 85350418 85353265 + AW047730 processed_transcript processed_transcript MGP_AJ_T0061759.1 MGP_AJ_G0027376.1 mouse_genomes_project 3 86187880 86317665 + MGP_AJ_P0061759 Ash1l protein_coding protein_coding MGP_AJ_T0061760.1 MGP_AJ_G0027376.1 mouse_genomes_project 3 86202902 86317663 + MGP_AJ_P0061760 Ash1l protein_coding protein_coding MGP_AJ_T0061761.1 MGP_AJ_G0027376.1 mouse_genomes_project 3 86259188 86264273 + Ash1l protein_coding retained_intron MGP_AJ_T0061762.1 MGP_AJ_G0027376.1 mouse_genomes_project 3 86288791 86291768 + Ash1l protein_coding retained_intron MGP_AJ_T0063313.1 MGP_AJ_G0027750.1 mouse_genomes_project 3 107020328 107020721 - MGP_AJ_P0063313 Gm9857 protein_coding protein_coding MGP_AJ_T0018006.1 MGP_AJ_G0015501.1 mouse_genomes_project 3 121604503 121605357 - Snhg8 processed_transcript lincRNA MGP_AJ_T0018007.1 MGP_AJ_G0015501.1 mouse_genomes_project 3 121604506 121605283 - Snhg8 processed_transcript retained_intron MGP_AJ_T0018008.1 MGP_AJ_G0015501.1 mouse_genomes_project 3 121604508 121605286 - Snhg8 processed_transcript lincRNA MGP_AJ_T0014109.1 MGP_AJ_G0012204.1 mouse_genomes_project 3 66904194 66904700 - processed_pseudogene processed_pseudogene MGP_AJ_T0014252.1 MGP_AJ_G0012347.1 mouse_genomes_project 3 108444130 108444773 + processed_pseudogene processed_pseudogene MGP_AJ_T0014333.1 MGP_AJ_G0012428.1 mouse_genomes_project 3 134009222 134009522 - processed_pseudogene processed_pseudogene MGP_AJ_T0062337.1 MGP_AJ_G0027525.1 mouse_genomes_project 3 92795983 92845017 - MGP_AJ_P0062337 Pip5k1a protein_coding protein_coding MGP_AJ_T0062338.1 MGP_AJ_G0027525.1 mouse_genomes_project 3 92795996 92845072 - MGP_AJ_P0062338 Pip5k1a protein_coding protein_coding MGP_AJ_T0062339.1 MGP_AJ_G0027525.1 mouse_genomes_project 3 92795998 92844998 - MGP_AJ_P0062339 Pip5k1a protein_coding protein_coding MGP_AJ_T0062340.1 MGP_AJ_G0027525.1 mouse_genomes_project 3 92796022 92844921 - MGP_AJ_P0062340 Pip5k1a protein_coding protein_coding MGP_AJ_T0062341.1 MGP_AJ_G0027525.1 mouse_genomes_project 3 92808334 92815818 - Pip5k1a protein_coding processed_transcript MGP_AJ_T0062342.1 MGP_AJ_G0027525.1 mouse_genomes_project 3 92815406 92820538 - Pip5k1a protein_coding retained_intron MGP_AJ_T0062343.1 MGP_AJ_G0027525.1 mouse_genomes_project 3 92835345 92844965 - Pip5k1a protein_coding processed_transcript MGP_AJ_T0102561.1 MGP_AJ_G0040303.1 mouse_genomes_project 3 96548378 96559050 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0007677.1 MGP_AJ_G0006277.1 mouse_genomes_project 3 114692626 114693050 + 4930512P04Rik lincRNA lincRNA MGP_AJ_T0001383.1 MGP_AJ_G0001306.1 mouse_genomes_project 3 150579694 150582749 - TEC TEC MGP_AJ_T0014193.1 MGP_AJ_G0012288.1 mouse_genomes_project 3 93557772 93558667 + processed_pseudogene processed_pseudogene MGP_AJ_T0014253.1 MGP_AJ_G0012348.1 mouse_genomes_project 3 108604524 108604858 - processed_pseudogene processed_pseudogene MGP_AJ_T0014289.1 MGP_AJ_G0012384.1 mouse_genomes_project 3 120272113 120273617 - processed_pseudogene processed_pseudogene MGP_AJ_T0011544.1 MGP_AJ_G0009666.1 mouse_genomes_project 3 80740890 80741188 - Gm22342 misc_RNA misc_RNA MGP_AJ_T0014262.1 MGP_AJ_G0012357.1 mouse_genomes_project 3 111084096 111084493 - processed_pseudogene processed_pseudogene MGP_AJ_T0010541.1 MGP_AJ_G0008663.1 mouse_genomes_project 3 107134796 107134910 + Gm44384 miRNA miRNA MGP_AJ_T0014136.1 MGP_AJ_G0012231.1 mouse_genomes_project 3 75290506 75291446 + processed_pseudogene processed_pseudogene MGP_AJ_T0007573.1 MGP_AJ_G0006197.1 mouse_genomes_project 3 66319086 66342013 + Gm1647 lincRNA lincRNA MGP_AJ_T0101133.1 MGP_AJ_G0039099.1 mouse_genomes_project 3 78965815 78965955 + Gm22531 snoRNA snoRNA MGP_AJ_T0014237.1 MGP_AJ_G0012332.1 mouse_genomes_project 3 104052710 104053026 + processed_pseudogene processed_pseudogene MGP_AJ_T0064040.1 MGP_AJ_G0027886.1 mouse_genomes_project 3 136356249 136372614 + MGP_AJ_P0064040 Adh6a protein_coding protein_coding MGP_AJ_T0064041.1 MGP_AJ_G0027886.1 mouse_genomes_project 3 136356249 136373210 + MGP_AJ_P0064041 Adh6a protein_coding protein_coding MGP_AJ_T0014035.1 MGP_AJ_G0012130.1 mouse_genomes_project 3 46687719 46688139 + processed_pseudogene processed_pseudogene MGP_AJ_T0001211.1 MGP_AJ_G0001135.1 mouse_genomes_project 3 50141125 50141581 + TEC TEC MGP_AJ_T0101132.1 MGP_AJ_G0039098.1 mouse_genomes_project 3 76090187 76090319 + Gm23440 snoRNA snoRNA MGP_AJ_T0063394.1 MGP_AJ_G0027767.1 mouse_genomes_project 3 114288243 114448765 - MGP_AJ_P0063394 Cdc14a protein_coding protein_coding MGP_AJ_T0063395.1 MGP_AJ_G0027767.1 mouse_genomes_project 3 114288243 114448719 - MGP_AJ_P0063395 Cdc14a protein_coding protein_coding MGP_AJ_T0063396.1 MGP_AJ_G0027767.1 mouse_genomes_project 3 114342314 114447382 - MGP_AJ_P0063396 Cdc14a protein_coding nonsense_mediated_decay MGP_AJ_T0063397.1 MGP_AJ_G0027767.1 mouse_genomes_project 3 114347533 114448765 - Cdc14a protein_coding retained_intron MGP_AJ_T0063398.1 MGP_AJ_G0027767.1 mouse_genomes_project 3 114424483 114447757 - Cdc14a protein_coding retained_intron MGP_AJ_T0063399.1 MGP_AJ_G0027767.1 mouse_genomes_project 3 114427685 114429787 - Cdc14a protein_coding retained_intron MGP_AJ_T0063400.1 MGP_AJ_G0027767.1 mouse_genomes_project 3 114428406 114448628 - Cdc14a protein_coding processed_transcript MGP_AJ_T0014125.1 MGP_AJ_G0012220.1 mouse_genomes_project 3 71973883 71974508 + processed_pseudogene processed_pseudogene MGP_AJ_T0001245.1 MGP_AJ_G0001169.1 mouse_genomes_project 3 72846884 72847397 - TEC TEC MGP_AJ_T0060521.1 MGP_AJ_G0027115.1 mouse_genomes_project 3 33201921 33234386 + MGP_AJ_P0060521 Acad9 protein_coding protein_coding MGP_AJ_T0060522.1 MGP_AJ_G0027115.1 mouse_genomes_project 3 33202009 33214223 + MGP_AJ_P0060522 Acad9 protein_coding protein_coding MGP_AJ_T0060523.1 MGP_AJ_G0027115.1 mouse_genomes_project 3 33202014 33229286 + Acad9 protein_coding retained_intron MGP_AJ_T0060524.1 MGP_AJ_G0027115.1 mouse_genomes_project 3 33214971 33218909 + Acad9 protein_coding retained_intron MGP_AJ_T0060525.1 MGP_AJ_G0027115.1 mouse_genomes_project 3 33216654 33227073 + MGP_AJ_P0060525 Acad9 protein_coding nonsense_mediated_decay MGP_AJ_T0060526.1 MGP_AJ_G0027115.1 mouse_genomes_project 3 33218348 33226725 + Acad9 protein_coding retained_intron MGP_AJ_T0060527.1 MGP_AJ_G0027115.1 mouse_genomes_project 3 33218423 33229286 + Acad9 protein_coding retained_intron MGP_AJ_T0060528.1 MGP_AJ_G0027115.1 mouse_genomes_project 3 33228017 33229553 + Acad9 protein_coding retained_intron MGP_AJ_T0062650.1 MGP_AJ_G0027594.1 mouse_genomes_project 3 94498878 94564356 + MGP_AJ_P0062650 Rnf115 protein_coding protein_coding MGP_AJ_T0062651.1 MGP_AJ_G0027594.1 mouse_genomes_project 3 94498886 94564842 + MGP_AJ_P0062651 Rnf115 protein_coding nonsense_mediated_decay MGP_AJ_T0062652.1 MGP_AJ_G0027594.1 mouse_genomes_project 3 94499053 94556919 + Rnf115 protein_coding processed_transcript MGP_AJ_T0001177.1 MGP_AJ_G0001103.1 mouse_genomes_project 3 47467320 47471316 - TEC TEC MGP_AJ_T0061412.1 MGP_AJ_G0027308.1 mouse_genomes_project 3 81604089 83005796 - MGP_AJ_P0061412 protein_coding protein_coding MGP_AJ_T0061434.1 MGP_AJ_G0027308.1 mouse_genomes_project 3 82919620 83005798 - protein_coding processed_transcript MGP_AJ_T0061435.1 MGP_AJ_G0027308.1 mouse_genomes_project 3 82935685 83005648 - protein_coding retained_intron MGP_AJ_T0007691.1 MGP_AJ_G0006286.1 mouse_genomes_project 3 120383494 120393632 + Gm40190 lincRNA lincRNA MGP_AJ_T0011545.1 MGP_AJ_G0009667.1 mouse_genomes_project 3 86548658 86548910 + Gm22642 misc_RNA misc_RNA MGP_AJ_T0061334.1 MGP_AJ_G0027287.1 mouse_genomes_project 3 79119920 79163150 - MGP_AJ_P0061334 Gucy1b3 protein_coding protein_coding MGP_AJ_T0061335.1 MGP_AJ_G0027287.1 mouse_genomes_project 3 79122241 79123253 - Gucy1b3 protein_coding retained_intron MGP_AJ_T0061336.1 MGP_AJ_G0027287.1 mouse_genomes_project 3 79139665 79163249 - Gucy1b3 protein_coding processed_transcript MGP_AJ_T0010559.1 MGP_AJ_G0008681.1 mouse_genomes_project 3 136566595 136566660 + Mir1956 miRNA miRNA MGP_AJ_T0014320.1 MGP_AJ_G0012415.1 mouse_genomes_project 3 131575549 131575824 - processed_pseudogene processed_pseudogene MGP_AJ_T0060891.1 MGP_AJ_G0027181.1 mouse_genomes_project 3 52198771 52234375 + MGP_AJ_P0060891 Ccdc169 protein_coding protein_coding MGP_AJ_T0060892.1 MGP_AJ_G0027181.1 mouse_genomes_project 3 52201541 52232968 + MGP_AJ_P0060892 Ccdc169 protein_coding protein_coding MGP_AJ_T0060893.1 MGP_AJ_G0027181.1 mouse_genomes_project 3 52201541 52231916 + MGP_AJ_P0060893 Ccdc169 protein_coding protein_coding MGP_AJ_T0060894.1 MGP_AJ_G0027181.1 mouse_genomes_project 3 52201558 52218581 + MGP_AJ_P0060894 Ccdc169 protein_coding protein_coding MGP_AJ_T0060895.1 MGP_AJ_G0027181.1 mouse_genomes_project 3 52203791 52233022 + MGP_AJ_P0060895 Ccdc169 protein_coding nonsense_mediated_decay MGP_AJ_T0060896.1 MGP_AJ_G0027181.1 mouse_genomes_project 3 52203791 52233022 + MGP_AJ_P0060896 Ccdc169 protein_coding nonsense_mediated_decay MGP_AJ_T0063304.1 MGP_AJ_G0027748.1 mouse_genomes_project 3 106979468 106991032 - MGP_AJ_P0063304 Prpf38b protein_coding nonsense_mediated_decay MGP_AJ_T0063305.1 MGP_AJ_G0027748.1 mouse_genomes_project 3 106979470 106991063 - MGP_AJ_P0063305 Prpf38b protein_coding protein_coding MGP_AJ_T0063306.1 MGP_AJ_G0027748.1 mouse_genomes_project 3 106979810 106990804 - MGP_AJ_P0063306 Prpf38b protein_coding nonsense_mediated_decay MGP_AJ_T0063307.1 MGP_AJ_G0027748.1 mouse_genomes_project 3 106981081 106984918 - Prpf38b protein_coding retained_intron MGP_AJ_T0063308.1 MGP_AJ_G0027748.1 mouse_genomes_project 3 106981296 106985451 - Prpf38b protein_coding processed_transcript MGP_AJ_T0063309.1 MGP_AJ_G0027748.1 mouse_genomes_project 3 106981441 106987317 - Prpf38b protein_coding processed_transcript MGP_AJ_T0063310.1 MGP_AJ_G0027748.1 mouse_genomes_project 3 106985894 106991046 - Prpf38b protein_coding retained_intron MGP_AJ_T0063311.1 MGP_AJ_G0027748.1 mouse_genomes_project 3 106985897 106989965 - Prpf38b protein_coding retained_intron MGP_AJ_T0014381.1 MGP_AJ_G0012476.1 mouse_genomes_project 3 154310437 154311546 + processed_pseudogene processed_pseudogene MGP_AJ_T0001286.1 MGP_AJ_G0001210.1 mouse_genomes_project 3 106344417 106349526 + TEC TEC MGP_AJ_T0098962.1 MGP_AJ_G0036939.1 mouse_genomes_project 3 92221802 92223961 - Gm43773 sense_intronic sense_intronic MGP_AJ_T0014169.1 MGP_AJ_G0012264.1 mouse_genomes_project 3 89494162 89494507 + processed_pseudogene processed_pseudogene MGP_AJ_T0014037.1 MGP_AJ_G0012132.1 mouse_genomes_project 3 47068279 47068601 + processed_pseudogene processed_pseudogene MGP_AJ_T0007742.1 MGP_AJ_G0006330.1 mouse_genomes_project 3 141290450 141304998 + A830019L24Rik lincRNA lincRNA MGP_AJ_T0007743.1 MGP_AJ_G0006330.1 mouse_genomes_project 3 141290925 141306886 + A830019L24Rik lincRNA lincRNA MGP_AJ_T0007590.1 MGP_AJ_G0006210.1 mouse_genomes_project 3 78049899 78059118 + Gm42468 lincRNA lincRNA MGP_AJ_T0101792.1 MGP_AJ_G0039704.1 mouse_genomes_project 3 94371596 94396312 - transcribed_processed_pseudogene processed_transcript MGP_AJ_T0101793.1 MGP_AJ_G0039704.1 mouse_genomes_project 3 94371599 94396311 - transcribed_processed_pseudogene processed_transcript MGP_AJ_T0101794.1 MGP_AJ_G0039704.1 mouse_genomes_project 3 94372561 94374891 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0062453.1 MGP_AJ_G0027546.1 mouse_genomes_project 3 93308702 93338120 + MGP_AJ_P0062453 Hormad1 protein_coding protein_coding MGP_AJ_T0062454.1 MGP_AJ_G0027546.1 mouse_genomes_project 3 93308703 93338282 + MGP_AJ_P0062454 Hormad1 protein_coding protein_coding MGP_AJ_T0062455.1 MGP_AJ_G0027546.1 mouse_genomes_project 3 93308703 93336476 + MGP_AJ_P0062455 Hormad1 protein_coding protein_coding MGP_AJ_T0062456.1 MGP_AJ_G0027546.1 mouse_genomes_project 3 93308703 93338120 + MGP_AJ_P0062456 Hormad1 protein_coding protein_coding MGP_AJ_T0001220.1 MGP_AJ_G0001144.1 mouse_genomes_project 3 53179101 53182105 - TEC TEC MGP_AJ_T0061469.1 MGP_AJ_G0027324.1 mouse_genomes_project 3 84376465 84389344 - MGP_AJ_P0061469 Fcrls protein_coding protein_coding MGP_AJ_T0061470.1 MGP_AJ_G0027324.1 mouse_genomes_project 3 84384674 84389483 - MGP_AJ_P0061470 Fcrls protein_coding protein_coding MGP_AJ_T0101777.1 MGP_AJ_G0039698.1 mouse_genomes_project 3 11682774 11683054 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0014245.1 MGP_AJ_G0012340.1 mouse_genomes_project 3 106299801 106300330 - processed_pseudogene processed_pseudogene MGP_AJ_T0007631.1 MGP_AJ_G0006238.1 mouse_genomes_project 3 94035256 94041334 + Gm42743 lincRNA lincRNA MGP_AJ_T0060295.1 MGP_AJ_G0027076.1 mouse_genomes_project 3 25817972 25852122 + MGP_AJ_P0060295 Slc2a2 protein_coding protein_coding MGP_AJ_T0060296.1 MGP_AJ_G0027076.1 mouse_genomes_project 3 25818086 25848228 + MGP_AJ_P0060296 Slc2a2 protein_coding nonsense_mediated_decay MGP_AJ_T0060297.1 MGP_AJ_G0027076.1 mouse_genomes_project 3 25842490 25849077 + Slc2a2 protein_coding retained_intron MGP_AJ_T0098992.1 MGP_AJ_G0036969.1 mouse_genomes_project 3 102080692 102084844 - Gm42702 sense_intronic sense_intronic MGP_AJ_T0062159.1 MGP_AJ_G0027459.1 mouse_genomes_project 3 89909116 89910756 + MGP_AJ_P0062159 Sprr2h protein_coding protein_coding MGP_AJ_T0062160.1 MGP_AJ_G0027459.1 mouse_genomes_project 3 89909131 89910532 + MGP_AJ_P0062160 Sprr2h protein_coding protein_coding MGP_AJ_T0098980.1 MGP_AJ_G0036957.1 mouse_genomes_project 3 100417328 100420234 + Gm42679 sense_intronic sense_intronic MGP_AJ_T0014029.1 MGP_AJ_G0012124.1 mouse_genomes_project 3 44289293 44289759 - processed_pseudogene processed_pseudogene MGP_AJ_T0004242.1 MGP_AJ_G0003729.1 mouse_genomes_project 3 50477079 50482258 + Gm16206 antisense antisense MGP_AJ_T0013949.1 MGP_AJ_G0012044.1 mouse_genomes_project 3 15870875 15871164 + processed_pseudogene processed_pseudogene MGP_AJ_T0062150.1 MGP_AJ_G0027452.1 mouse_genomes_project 3 89763197 89766482 + MGP_AJ_P0062150 protein_coding protein_coding MGP_AJ_T0014352.1 MGP_AJ_G0012447.1 mouse_genomes_project 3 138658665 138658918 - processed_pseudogene processed_pseudogene MGP_AJ_T0062272.1 MGP_AJ_G0027516.1 mouse_genomes_project 3 92461370 92498992 - MGP_AJ_P0062272 Cgn protein_coding protein_coding MGP_AJ_T0062273.1 MGP_AJ_G0027516.1 mouse_genomes_project 3 92461372 92498963 - MGP_AJ_P0062273 Cgn protein_coding protein_coding MGP_AJ_T0062274.1 MGP_AJ_G0027516.1 mouse_genomes_project 3 92487716 92498967 - MGP_AJ_P0062274 Cgn protein_coding protein_coding MGP_AJ_T0062275.1 MGP_AJ_G0027516.1 mouse_genomes_project 3 92487716 92498951 - MGP_AJ_P0062275 Cgn protein_coding protein_coding MGP_AJ_T0099811.1 MGP_AJ_G0037777.1 mouse_genomes_project 3 16687684 16687848 + Gm23330 snRNA snRNA MGP_AJ_T0060518.1 MGP_AJ_G0027114.1 mouse_genomes_project 3 33141848 33189528 - MGP_AJ_P0060518 Ccdc144b protein_coding protein_coding MGP_AJ_T0060519.1 MGP_AJ_G0027114.1 mouse_genomes_project 3 33145273 33189513 - MGP_AJ_P0060519 Ccdc144b protein_coding protein_coding MGP_AJ_T0060520.1 MGP_AJ_G0027114.1 mouse_genomes_project 3 33149949 33189513 - MGP_AJ_P0060520 Ccdc144b protein_coding nonsense_mediated_decay MGP_AJ_T0007680.1 MGP_AJ_G0006280.1 mouse_genomes_project 3 116033757 116038206 + 4921521D15Rik lincRNA lincRNA MGP_AJ_T0064120.1 MGP_AJ_G0027902.1 mouse_genomes_project 3 140661062 140675686 + MGP_AJ_P0064120 Gbp2 protein_coding protein_coding MGP_AJ_T0060635.1 MGP_AJ_G0027136.1 mouse_genomes_project 3 36020332 36145718 + MGP_AJ_P0060635 Fat4 protein_coding unknown_likely_coding MGP_AJ_T0060636.1 MGP_AJ_G0027136.1 mouse_genomes_project 3 36024774 36086032 + Fat4 protein_coding retained_intron MGP_AJ_T0014170.1 MGP_AJ_G0012265.1 mouse_genomes_project 3 89775908 89777029 - processed_pseudogene processed_pseudogene MGP_AJ_T0001336.1 MGP_AJ_G0001260.1 mouse_genomes_project 3 125765655 125768016 - TEC TEC MGP_AJ_T0062201.1 MGP_AJ_G0027495.1 mouse_genomes_project 3 90738222 90742912 + MGP_AJ_P0062201 Crnn protein_coding protein_coding MGP_AJ_T0062202.1 MGP_AJ_G0027495.1 mouse_genomes_project 3 90738224 90743332 + MGP_AJ_P0062202 Crnn protein_coding protein_coding MGP_AJ_T0062203.1 MGP_AJ_G0027495.1 mouse_genomes_project 3 90741650 90743331 + MGP_AJ_P0062203 Crnn protein_coding protein_coding MGP_AJ_T0014205.1 MGP_AJ_G0012300.1 mouse_genomes_project 3 96723170 96723425 + processed_pseudogene processed_pseudogene MGP_AJ_T0014088.1 MGP_AJ_G0012183.1 mouse_genomes_project 3 63218533 63218896 - processed_pseudogene processed_pseudogene MGP_AJ_T0004404.1 MGP_AJ_G0003838.1 mouse_genomes_project 3 150296769 150297714 + Gm43455 antisense antisense MGP_AJ_T0004405.1 MGP_AJ_G0003838.1 mouse_genomes_project 3 150296988 150297714 + Gm43455 antisense antisense MGP_AJ_T0063222.1 MGP_AJ_G0027732.1 mouse_genomes_project 3 106313762 106336507 + MGP_AJ_P0063222 Psma5 protein_coding protein_coding MGP_AJ_T0063223.1 MGP_AJ_G0027732.1 mouse_genomes_project 3 106325407 106336429 + MGP_AJ_P0063223 Psma5 protein_coding nonsense_mediated_decay MGP_AJ_T0013897.1 MGP_AJ_G0011992.1 mouse_genomes_project 3 1754988 1755108 + processed_pseudogene processed_pseudogene MGP_AJ_T0060798.1 MGP_AJ_G0027163.1 mouse_genomes_project 3 50011756 50047116 - MGP_AJ_P0060798 Cog6 protein_coding protein_coding MGP_AJ_T0060799.1 MGP_AJ_G0027163.1 mouse_genomes_project 3 50012003 50024449 - Cog6 protein_coding retained_intron MGP_AJ_T0060800.1 MGP_AJ_G0027163.1 mouse_genomes_project 3 50014608 50047095 - MGP_AJ_P0060800 Cog6 protein_coding protein_coding MGP_AJ_T0060801.1 MGP_AJ_G0027163.1 mouse_genomes_project 3 50023449 50047097 - MGP_AJ_P0060801 Cog6 protein_coding protein_coding MGP_AJ_T0060802.1 MGP_AJ_G0027163.1 mouse_genomes_project 3 50025563 50047089 - Cog6 protein_coding retained_intron MGP_AJ_T0060803.1 MGP_AJ_G0027163.1 mouse_genomes_project 3 50040235 50047091 - Cog6 protein_coding retained_intron MGP_AJ_T0102571.1 MGP_AJ_G0040313.1 mouse_genomes_project 3 111195030 111206965 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0102563.1 MGP_AJ_G0040305.1 mouse_genomes_project 3 96719057 96733117 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0061096.1 MGP_AJ_G0027232.1 mouse_genomes_project 3 62621818 62634787 - MGP_AJ_P0061096 Ssr3 protein_coding protein_coding MGP_AJ_T0061097.1 MGP_AJ_G0027232.1 mouse_genomes_project 3 62623843 62625545 - Ssr3 protein_coding retained_intron MGP_AJ_T0061098.1 MGP_AJ_G0027232.1 mouse_genomes_project 3 62624193 62634717 - MGP_AJ_P0061098 Ssr3 protein_coding protein_coding MGP_AJ_T0062156.1 MGP_AJ_G0027456.1 mouse_genomes_project 3 89862534 89864268 + MGP_AJ_P0062156 Sprr2d protein_coding protein_coding MGP_AJ_T0007601.1 MGP_AJ_G0006220.1 mouse_genomes_project 3 82520878 82551265 - Gm42813 lincRNA lincRNA MGP_AJ_T0014042.1 MGP_AJ_G0012137.1 mouse_genomes_project 3 48414868 48415187 - processed_pseudogene processed_pseudogene MGP_AJ_T0004348.1 MGP_AJ_G0003795.1 mouse_genomes_project 3 106305745 106313822 - 1700010K24Rik antisense antisense MGP_AJ_T0063187.1 MGP_AJ_G0027724.1 mouse_genomes_project 3 106131658 106143152 - Ampd2 protein_coding retained_intron MGP_AJ_T0063188.1 MGP_AJ_G0027724.1 mouse_genomes_project 3 106131658 106144224 - MGP_AJ_P0063188 Ampd2 protein_coding protein_coding MGP_AJ_T0063189.1 MGP_AJ_G0027724.1 mouse_genomes_project 3 106131660 106144248 - MGP_AJ_P0063189 Ampd2 protein_coding protein_coding MGP_AJ_T0063190.1 MGP_AJ_G0027724.1 mouse_genomes_project 3 106131683 106142996 - MGP_AJ_P0063190 Ampd2 protein_coding protein_coding MGP_AJ_T0063191.1 MGP_AJ_G0027724.1 mouse_genomes_project 3 106132340 106133067 - Ampd2 protein_coding retained_intron MGP_AJ_T0063192.1 MGP_AJ_G0027724.1 mouse_genomes_project 3 106132960 106134029 - Ampd2 protein_coding retained_intron MGP_AJ_T0063193.1 MGP_AJ_G0027724.1 mouse_genomes_project 3 106134209 106135492 - Ampd2 protein_coding retained_intron MGP_AJ_T0063194.1 MGP_AJ_G0027724.1 mouse_genomes_project 3 106136064 106137306 - Ampd2 protein_coding retained_intron MGP_AJ_T0063195.1 MGP_AJ_G0027724.1 mouse_genomes_project 3 106136228 106138215 - Ampd2 protein_coding retained_intron MGP_AJ_T0063196.1 MGP_AJ_G0027724.1 mouse_genomes_project 3 106137518 106142992 - Ampd2 protein_coding retained_intron MGP_AJ_T0060780.1 MGP_AJ_G0027158.1 mouse_genomes_project 3 48499517 48509776 + Rab33b protein_coding processed_transcript MGP_AJ_T0060781.1 MGP_AJ_G0027158.1 mouse_genomes_project 3 48499527 48500124 + MGP_AJ_P0060781 Rab33b protein_coding protein_coding MGP_AJ_T0060782.1 MGP_AJ_G0027158.1 mouse_genomes_project 3 48499563 48511912 + MGP_AJ_P0060782 Rab33b protein_coding protein_coding MGP_AJ_T0014232.1 MGP_AJ_G0012327.1 mouse_genomes_project 3 102576658 102577001 - processed_pseudogene processed_pseudogene MGP_AJ_T0062189.1 MGP_AJ_G0027485.1 mouse_genomes_project 3 90332451 90334168 - MGP_AJ_P0062189 Lce1k protein_coding protein_coding MGP_AJ_T0060112.1 MGP_AJ_G0027036.1 mouse_genomes_project 3 11595247 11621901 + MGP_AJ_P0060112 Slc7a12 protein_coding protein_coding MGP_AJ_T0060113.1 MGP_AJ_G0027036.1 mouse_genomes_project 3 11595250 11621795 + MGP_AJ_P0060113 Slc7a12 protein_coding protein_coding MGP_AJ_T0060114.1 MGP_AJ_G0027036.1 mouse_genomes_project 3 11595323 11621795 + MGP_AJ_P0060114 Slc7a12 protein_coding protein_coding MGP_AJ_T0014175.1 MGP_AJ_G0012270.1 mouse_genomes_project 3 90466391 90466783 + processed_pseudogene processed_pseudogene MGP_AJ_T0014343.1 MGP_AJ_G0012438.1 mouse_genomes_project 3 136644833 136646046 + processed_pseudogene processed_pseudogene MGP_AJ_T0001234.1 MGP_AJ_G0001158.1 mouse_genomes_project 3 62923497 62926042 + TEC TEC MGP_AJ_T0001302.1 MGP_AJ_G0001226.1 mouse_genomes_project 3 119230354 119232977 + TEC TEC MGP_AJ_T0007675.1 MGP_AJ_G0006275.1 mouse_genomes_project 3 114214986 114217292 + Gm43202 lincRNA lincRNA MGP_AJ_T0061238.1 MGP_AJ_G0027266.1 mouse_genomes_project 3 72416345 72444969 - MGP_AJ_P0061238 Serpini2 protein_coding protein_coding MGP_AJ_T0014282.1 MGP_AJ_G0012377.1 mouse_genomes_project 3 119241737 119242732 - processed_pseudogene processed_pseudogene MGP_AJ_T0101110.1 MGP_AJ_G0039076.1 mouse_genomes_project 3 25008599 25008760 + Gm26040 snoRNA snoRNA MGP_AJ_T0001399.1 MGP_AJ_G0001322.1 mouse_genomes_project 3 156281939 156284410 - TEC TEC MGP_AJ_T0062829.1 MGP_AJ_G0027641.1 mouse_genomes_project 3 100395946 100447681 + MGP_AJ_P0062829 Ngf protein_coding protein_coding MGP_AJ_T0062830.1 MGP_AJ_G0027641.1 mouse_genomes_project 3 100395955 100436674 + MGP_AJ_P0062830 Ngf protein_coding protein_coding MGP_AJ_T0062831.1 MGP_AJ_G0027641.1 mouse_genomes_project 3 100395955 100447846 + MGP_AJ_P0062831 Ngf protein_coding protein_coding MGP_AJ_T0062832.1 MGP_AJ_G0027641.1 mouse_genomes_project 3 100414680 100447828 + MGP_AJ_P0062832 Ngf protein_coding protein_coding MGP_AJ_T0004228.1 MGP_AJ_G0003717.1 mouse_genomes_project 3 34204945 34212786 - Gm12531 antisense antisense MGP_AJ_T0004229.1 MGP_AJ_G0003717.1 mouse_genomes_project 3 34204947 34212781 - Gm12531 antisense antisense MGP_AJ_T0004322.1 MGP_AJ_G0003786.1 mouse_genomes_project 3 101714983 101717386 + Gm15886 antisense antisense MGP_AJ_T0004323.1 MGP_AJ_G0003786.1 mouse_genomes_project 3 101715004 101732759 + Gm15886 antisense antisense MGP_AJ_T0004324.1 MGP_AJ_G0003786.1 mouse_genomes_project 3 101715339 101720941 + Gm15886 antisense antisense MGP_AJ_T0004325.1 MGP_AJ_G0003786.1 mouse_genomes_project 3 101720359 101721352 + Gm15886 antisense antisense MGP_AJ_T0062535.1 MGP_AJ_G0027558.1 mouse_genomes_project 3 93647364 93652952 + MGP_AJ_P0062535 Aph1a protein_coding protein_coding MGP_AJ_T0062536.1 MGP_AJ_G0027558.1 mouse_genomes_project 3 93647389 93653134 + MGP_AJ_P0062536 Aph1a protein_coding unknown_likely_coding MGP_AJ_T0062537.1 MGP_AJ_G0027558.1 mouse_genomes_project 3 93647428 93648388 + MGP_AJ_P0062537 Aph1a protein_coding protein_coding MGP_AJ_T0062538.1 MGP_AJ_G0027558.1 mouse_genomes_project 3 93647861 93652496 + Aph1a protein_coding retained_intron MGP_AJ_T0001207.1 MGP_AJ_G0001131.1 mouse_genomes_project 3 49308662 49310762 + TEC TEC MGP_AJ_T0062597.1 MGP_AJ_G0027580.1 mouse_genomes_project 3 94286601 94290602 + MGP_AJ_P0062597 Hfe2 protein_coding protein_coding MGP_AJ_T0060855.1 MGP_AJ_G0027173.1 mouse_genomes_project 3 51767720 51768898 - MGP_AJ_P0060855 Gm21958 protein_coding protein_coding MGP_AJ_T0102550.1 MGP_AJ_G0040292.1 mouse_genomes_project 3 87400996 87401394 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0001332.1 MGP_AJ_G0001256.1 mouse_genomes_project 3 125211816 125215515 - TEC TEC MGP_AJ_T0099882.1 MGP_AJ_G0037848.1 mouse_genomes_project 3 136385603 136385762 + Gm23467 snRNA snRNA MGP_AJ_T0062691.1 MGP_AJ_G0027602.1 mouse_genomes_project 3 95208811 95209774 - MGP_AJ_P0062691 Olfr1402 protein_coding protein_coding MGP_AJ_T0060073.1 MGP_AJ_G0027022.1 mouse_genomes_project 3 6794209 6938669 - MGP_AJ_P0060073 Pag1 protein_coding protein_coding MGP_AJ_T0060074.1 MGP_AJ_G0027022.1 mouse_genomes_project 3 6798608 6938620 - MGP_AJ_P0060074 Pag1 protein_coding protein_coding MGP_AJ_T0060075.1 MGP_AJ_G0027022.1 mouse_genomes_project 3 6799477 6811714 - Pag1 protein_coding retained_intron MGP_AJ_T0060076.1 MGP_AJ_G0027022.1 mouse_genomes_project 3 6853168 6938353 - Pag1 protein_coding retained_intron MGP_AJ_T0060077.1 MGP_AJ_G0027022.1 mouse_genomes_project 3 6932432 6938620 - Pag1 protein_coding processed_transcript MGP_AJ_T0014342.1 MGP_AJ_G0012437.1 mouse_genomes_project 3 136622980 136623874 - processed_pseudogene processed_pseudogene MGP_AJ_T0101797.1 MGP_AJ_G0039707.1 mouse_genomes_project 3 125520705 125521700 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0064118.1 MGP_AJ_G0027901.1 mouse_genomes_project 3 140627239 140655999 + MGP_AJ_P0064118 Gbp2b protein_coding protein_coding MGP_AJ_T0064119.1 MGP_AJ_G0027901.1 mouse_genomes_project 3 140630535 140656007 + MGP_AJ_P0064119 Gbp2b protein_coding unknown_likely_coding MGP_AJ_T0004269.1 MGP_AJ_G0003749.1 mouse_genomes_project 3 82439862 82453589 + 1700036G14Rik antisense antisense MGP_AJ_T0063735.1 MGP_AJ_G0027826.1 mouse_genomes_project 3 127265338 127285024 + MGP_AJ_P0063735 Pitx2 protein_coding protein_coding MGP_AJ_T0063736.1 MGP_AJ_G0027826.1 mouse_genomes_project 3 127265382 127285012 + MGP_AJ_P0063736 Pitx2 protein_coding protein_coding MGP_AJ_T0063737.1 MGP_AJ_G0027826.1 mouse_genomes_project 3 127265386 127285025 + MGP_AJ_P0063737 Pitx2 protein_coding protein_coding MGP_AJ_T0063738.1 MGP_AJ_G0027826.1 mouse_genomes_project 3 127265429 127270038 + MGP_AJ_P0063738 Pitx2 protein_coding protein_coding MGP_AJ_T0063739.1 MGP_AJ_G0027826.1 mouse_genomes_project 3 127269407 127284331 + MGP_AJ_P0063739 Pitx2 protein_coding protein_coding MGP_AJ_T0063740.1 MGP_AJ_G0027826.1 mouse_genomes_project 3 127279365 127282208 + Pitx2 protein_coding retained_intron MGP_AJ_T0063741.1 MGP_AJ_G0027826.1 mouse_genomes_project 3 127279405 127285022 + MGP_AJ_P0063741 Pitx2 protein_coding protein_coding MGP_AJ_T0063742.1 MGP_AJ_G0027826.1 mouse_genomes_project 3 127279708 127282058 + MGP_AJ_P0063742 Pitx2 protein_coding protein_coding MGP_AJ_T0007720.1 MGP_AJ_G0006311.1 mouse_genomes_project 3 132206812 132218340 + Gm43194 lincRNA lincRNA MGP_AJ_T0007721.1 MGP_AJ_G0006311.1 mouse_genomes_project 3 132206950 132219837 + Gm43194 lincRNA lincRNA MGP_AJ_T0062113.1 MGP_AJ_G0027435.1 mouse_genomes_project 3 87832473 87838368 + MGP_AJ_P0062113 S100a16 protein_coding protein_coding MGP_AJ_T0062114.1 MGP_AJ_G0027435.1 mouse_genomes_project 3 87832534 87838234 + MGP_AJ_P0062114 S100a16 protein_coding protein_coding MGP_AJ_T0062115.1 MGP_AJ_G0027435.1 mouse_genomes_project 3 87832544 87837955 + S100a16 protein_coding processed_transcript MGP_AJ_T0062116.1 MGP_AJ_G0027435.1 mouse_genomes_project 3 87834104 87838147 + MGP_AJ_P0062116 S100a16 protein_coding protein_coding MGP_AJ_T0062117.1 MGP_AJ_G0027435.1 mouse_genomes_project 3 87834507 87837649 + MGP_AJ_P0062117 S100a16 protein_coding protein_coding MGP_AJ_T0062118.1 MGP_AJ_G0027435.1 mouse_genomes_project 3 87836365 87837968 + MGP_AJ_P0062118 S100a16 protein_coding protein_coding MGP_AJ_T0062119.1 MGP_AJ_G0027435.1 mouse_genomes_project 3 87836368 87838082 + MGP_AJ_P0062119 S100a16 protein_coding protein_coding MGP_AJ_T0062120.1 MGP_AJ_G0027435.1 mouse_genomes_project 3 87836380 87838371 + MGP_AJ_P0062120 S100a16 protein_coding protein_coding MGP_AJ_T0061342.1 MGP_AJ_G0027289.1 mouse_genomes_project 3 79454316 79478609 + MGP_AJ_P0061342 Map9 protein_coding protein_coding MGP_AJ_T0061343.1 MGP_AJ_G0027289.1 mouse_genomes_project 3 79454344 79474128 + MGP_AJ_P0061343 Map9 protein_coding protein_coding MGP_AJ_T0061344.1 MGP_AJ_G0027289.1 mouse_genomes_project 3 79454344 79491661 + MGP_AJ_P0061344 Map9 protein_coding protein_coding MGP_AJ_T0061345.1 MGP_AJ_G0027289.1 mouse_genomes_project 3 79454442 79478545 + MGP_AJ_P0061345 Map9 protein_coding protein_coding MGP_AJ_T0061346.1 MGP_AJ_G0027289.1 mouse_genomes_project 3 79454459 79491661 + MGP_AJ_P0061346 Map9 protein_coding protein_coding MGP_AJ_T0061347.1 MGP_AJ_G0027289.1 mouse_genomes_project 3 79474878 79476953 + Map9 protein_coding retained_intron MGP_AJ_T0061348.1 MGP_AJ_G0027289.1 mouse_genomes_project 3 79475239 79478327 + MGP_AJ_P0061348 Map9 protein_coding protein_coding MGP_AJ_T0061386.1 MGP_AJ_G0027304.1 mouse_genomes_project 3 81271372 81418719 - MGP_AJ_P0061386 Trim2 protein_coding protein_coding MGP_AJ_T0061387.1 MGP_AJ_G0027304.1 mouse_genomes_project 3 81271373 81373640 - MGP_AJ_P0061387 Trim2 protein_coding protein_coding MGP_AJ_T0061388.1 MGP_AJ_G0027304.1 mouse_genomes_project 3 81271374 81334228 - MGP_AJ_P0061388 Trim2 protein_coding protein_coding MGP_AJ_T0061389.1 MGP_AJ_G0027304.1 mouse_genomes_project 3 81272807 81334216 - MGP_AJ_P0061389 Trim2 protein_coding protein_coding MGP_AJ_T0061390.1 MGP_AJ_G0027304.1 mouse_genomes_project 3 81274273 81325510 - MGP_AJ_P0061390 Trim2 protein_coding protein_coding MGP_AJ_T0061391.1 MGP_AJ_G0027304.1 mouse_genomes_project 3 81274639 81334184 - Trim2 protein_coding retained_intron MGP_AJ_T0061392.1 MGP_AJ_G0027304.1 mouse_genomes_project 3 81274654 81384635 - MGP_AJ_P0061392 Trim2 protein_coding protein_coding MGP_AJ_T0061394.1 MGP_AJ_G0027304.1 mouse_genomes_project 3 81288190 81302193 - Trim2 protein_coding retained_intron MGP_AJ_T0061395.1 MGP_AJ_G0027304.1 mouse_genomes_project 3 81300055 81334213 - Trim2 protein_coding retained_intron MGP_AJ_T0061396.1 MGP_AJ_G0027304.1 mouse_genomes_project 3 81302331 81303218 - Trim2 protein_coding processed_transcript MGP_AJ_T0061397.1 MGP_AJ_G0027304.1 mouse_genomes_project 3 81303873 81419307 - MGP_AJ_P0061397 Trim2 protein_coding protein_coding MGP_AJ_T0061398.1 MGP_AJ_G0027304.1 mouse_genomes_project 3 81303884 81419356 - MGP_AJ_P0061398 Trim2 protein_coding protein_coding MGP_AJ_T0061399.1 MGP_AJ_G0027304.1 mouse_genomes_project 3 81305032 81373197 - MGP_AJ_P0061399 Trim2 protein_coding protein_coding MGP_AJ_T0061400.1 MGP_AJ_G0027304.1 mouse_genomes_project 3 81319153 81334200 - Trim2 protein_coding retained_intron MGP_AJ_T0061401.1 MGP_AJ_G0027304.1 mouse_genomes_project 3 81320450 81334213 - Trim2 protein_coding retained_intron MGP_AJ_T0061402.1 MGP_AJ_G0027304.1 mouse_genomes_project 3 81321052 81334213 - MGP_AJ_P0061402 Trim2 protein_coding protein_coding MGP_AJ_T0061403.1 MGP_AJ_G0027304.1 mouse_genomes_project 3 81371510 81373197 - Trim2 protein_coding processed_transcript MGP_AJ_T0061404.1 MGP_AJ_G0027304.1 mouse_genomes_project 3 81413870 81418651 - Trim2 protein_coding processed_transcript MGP_AJ_T0061405.1 MGP_AJ_G0027304.1 mouse_genomes_project 3 81418755 81420790 - Trim2 protein_coding processed_transcript MGP_AJ_T0064466.1 MGP_AJ_G0027961.1 mouse_genomes_project 3 152532074 152556724 - MGP_AJ_P0064466 Lhx8 protein_coding protein_coding MGP_AJ_T0064467.1 MGP_AJ_G0027961.1 mouse_genomes_project 3 152532076 152556123 - MGP_AJ_P0064467 Lhx8 protein_coding protein_coding MGP_AJ_T0064468.1 MGP_AJ_G0027961.1 mouse_genomes_project 3 152532758 152554230 - MGP_AJ_P0064468 Lhx8 protein_coding nonsense_mediated_decay MGP_AJ_T0064469.1 MGP_AJ_G0027961.1 mouse_genomes_project 3 152542800 152550935 - Lhx8 protein_coding retained_intron MGP_AJ_T0064470.1 MGP_AJ_G0027961.1 mouse_genomes_project 3 152548308 152554698 - MGP_AJ_P0064470 Lhx8 protein_coding protein_coding MGP_AJ_T0062886.1 MGP_AJ_G0027650.1 mouse_genomes_project 3 101032731 101098471 + MGP_AJ_P0062886 Dennd2c protein_coding protein_coding MGP_AJ_T0062887.1 MGP_AJ_G0027650.1 mouse_genomes_project 3 101032787 101086004 + Dennd2c protein_coding retained_intron MGP_AJ_T0062888.1 MGP_AJ_G0027650.1 mouse_genomes_project 3 101057657 101098440 + MGP_AJ_P0062888 Dennd2c protein_coding protein_coding MGP_AJ_T0062889.1 MGP_AJ_G0027650.1 mouse_genomes_project 3 101069299 101097366 + Dennd2c protein_coding processed_transcript MGP_AJ_T0062890.1 MGP_AJ_G0027650.1 mouse_genomes_project 3 101069805 101098433 + Dennd2c protein_coding retained_intron MGP_AJ_T0062891.1 MGP_AJ_G0027650.1 mouse_genomes_project 3 101077895 101087237 + Dennd2c protein_coding retained_intron MGP_AJ_T0007643.1 MGP_AJ_G0006249.1 mouse_genomes_project 3 98397406 98431530 + Gm12474 lincRNA lincRNA MGP_AJ_T0099855.1 MGP_AJ_G0037821.1 mouse_genomes_project 3 90478603 90478705 - Gm24481 snRNA snRNA MGP_AJ_T0001212.1 MGP_AJ_G0001136.1 mouse_genomes_project 3 50143623 50144447 + TEC TEC MGP_AJ_T0007789.1 MGP_AJ_G0006365.1 mouse_genomes_project 3 154224998 154259111 + 9330178D15Rik lincRNA lincRNA MGP_AJ_T0062575.1 MGP_AJ_G0027565.1 mouse_genomes_project 3 93939280 93944691 + MGP_AJ_P0062575 Sf3b4 protein_coding protein_coding MGP_AJ_T0062576.1 MGP_AJ_G0027565.1 mouse_genomes_project 3 93939493 93940293 + Sf3b4 protein_coding retained_intron MGP_AJ_T0001354.1 MGP_AJ_G0001277.1 mouse_genomes_project 3 129598669 129602013 - TEC TEC MGP_AJ_T0062797.1 MGP_AJ_G0027633.1 mouse_genomes_project 3 99201881 99213883 - MGP_AJ_P0062797 Cd2 protein_coding protein_coding MGP_AJ_T0062798.1 MGP_AJ_G0027633.1 mouse_genomes_project 3 99201890 99206364 - Cd2 protein_coding retained_intron MGP_AJ_T0062799.1 MGP_AJ_G0027633.1 mouse_genomes_project 3 99208996 99213823 - Cd2 protein_coding retained_intron MGP_AJ_T0102560.1 MGP_AJ_G0040302.1 mouse_genomes_project 3 91931447 91931639 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0061168.1 MGP_AJ_G0027249.1 mouse_genomes_project 3 65899112 65907016 + MGP_AJ_P0061168 Il12a protein_coding protein_coding MGP_AJ_T0061169.1 MGP_AJ_G0027249.1 mouse_genomes_project 3 65899892 65907012 + MGP_AJ_P0061169 Il12a protein_coding protein_coding MGP_AJ_T0061170.1 MGP_AJ_G0027249.1 mouse_genomes_project 3 65899995 65906560 + Il12a protein_coding retained_intron MGP_AJ_T0061171.1 MGP_AJ_G0027249.1 mouse_genomes_project 3 65902461 65906492 + Il12a protein_coding retained_intron MGP_AJ_T0061172.1 MGP_AJ_G0027249.1 mouse_genomes_project 3 65902489 65907014 + Il12a protein_coding retained_intron MGP_AJ_T0061173.1 MGP_AJ_G0027249.1 mouse_genomes_project 3 65902489 65907016 + Il12a protein_coding retained_intron MGP_AJ_T0062671.1 MGP_AJ_G0027599.1 mouse_genomes_project 3 94681394 94694996 - MGP_AJ_P0062671 Gja8 protein_coding protein_coding MGP_AJ_T0001161.1 MGP_AJ_G0001087.1 mouse_genomes_project 3 36767636 36770629 + TEC TEC MGP_AJ_T0001175.1 MGP_AJ_G0001101.1 mouse_genomes_project 3 45145924 45146033 + TEC TEC MGP_AJ_T0014247.1 MGP_AJ_G0012342.1 mouse_genomes_project 3 106674962 106675387 - processed_pseudogene processed_pseudogene MGP_AJ_T0007655.1 MGP_AJ_G0006259.1 mouse_genomes_project 3 102292981 102308960 - Gm5546 lincRNA lincRNA MGP_AJ_T0061562.1 MGP_AJ_G0027343.1 mouse_genomes_project 3 85166200 85172033 - Hapln2 protein_coding retained_intron MGP_AJ_T0061563.1 MGP_AJ_G0027343.1 mouse_genomes_project 3 85166511 85171928 - MGP_AJ_P0061563 Hapln2 protein_coding protein_coding MGP_AJ_T0061564.1 MGP_AJ_G0027343.1 mouse_genomes_project 3 85167088 85168124 - Hapln2 protein_coding retained_intron MGP_AJ_T0061565.1 MGP_AJ_G0027343.1 mouse_genomes_project 3 85167984 85171942 - MGP_AJ_P0061565 Hapln2 protein_coding nonsense_mediated_decay MGP_AJ_T0101162.1 MGP_AJ_G0039128.1 mouse_genomes_project 3 121604889 121605019 - Snora24 snoRNA snoRNA MGP_AJ_T0062246.1 MGP_AJ_G0027512.1 mouse_genomes_project 3 92166054 92172949 + MGP_AJ_P0062246 Celf3 protein_coding protein_coding MGP_AJ_T0062247.1 MGP_AJ_G0027512.1 mouse_genomes_project 3 92166437 92179791 + MGP_AJ_P0062247 Celf3 protein_coding protein_coding MGP_AJ_T0062248.1 MGP_AJ_G0027512.1 mouse_genomes_project 3 92166684 92179792 + MGP_AJ_P0062248 Celf3 protein_coding protein_coding MGP_AJ_T0062249.1 MGP_AJ_G0027512.1 mouse_genomes_project 3 92166713 92179795 + MGP_AJ_P0062249 Celf3 protein_coding protein_coding MGP_AJ_T0062250.1 MGP_AJ_G0027512.1 mouse_genomes_project 3 92166723 92175198 + Celf3 protein_coding retained_intron MGP_AJ_T0062251.1 MGP_AJ_G0027512.1 mouse_genomes_project 3 92170185 92174841 + Celf3 protein_coding processed_transcript MGP_AJ_T0062252.1 MGP_AJ_G0027512.1 mouse_genomes_project 3 92170352 92179791 + Celf3 protein_coding processed_transcript MGP_AJ_T0062253.1 MGP_AJ_G0027512.1 mouse_genomes_project 3 92171957 92179791 + Celf3 protein_coding retained_intron MGP_AJ_T0062254.1 MGP_AJ_G0027512.1 mouse_genomes_project 3 92171994 92174569 + MGP_AJ_P0062254 Celf3 protein_coding protein_coding MGP_AJ_T0062255.1 MGP_AJ_G0027512.1 mouse_genomes_project 3 92172001 92174914 + MGP_AJ_P0062255 Celf3 protein_coding protein_coding MGP_AJ_T0062256.1 MGP_AJ_G0027512.1 mouse_genomes_project 3 92172907 92179780 + Celf3 protein_coding retained_intron MGP_AJ_T0062257.1 MGP_AJ_G0027512.1 mouse_genomes_project 3 92174275 92176241 + Celf3 protein_coding retained_intron MGP_AJ_T0062258.1 MGP_AJ_G0027512.1 mouse_genomes_project 3 92174831 92177194 + Celf3 protein_coding retained_intron MGP_AJ_T0060630.1 MGP_AJ_G0027134.1 mouse_genomes_project 3 34864179 34870271 - protein_coding processed_transcript MGP_AJ_T0007461.1 MGP_AJ_G0006114.1 mouse_genomes_project 3 10588699 10590138 - Gm2464 lincRNA lincRNA MGP_AJ_T0001121.1 MGP_AJ_G0001047.1 mouse_genomes_project 3 17964987 17969056 + TEC TEC MGP_AJ_T0063206.1 MGP_AJ_G0027728.1 mouse_genomes_project 3 106246846 106252288 + MGP_AJ_P0063206 Amigo1 protein_coding protein_coding MGP_AJ_T0063207.1 MGP_AJ_G0027728.1 mouse_genomes_project 3 106246861 106252289 + MGP_AJ_P0063207 Amigo1 protein_coding protein_coding MGP_AJ_T0063208.1 MGP_AJ_G0027728.1 mouse_genomes_project 3 106246869 106252798 + MGP_AJ_P0063208 Amigo1 protein_coding protein_coding MGP_AJ_T0063209.1 MGP_AJ_G0027728.1 mouse_genomes_project 3 106248554 106252287 + MGP_AJ_P0063209 Amigo1 protein_coding protein_coding MGP_AJ_T0063210.1 MGP_AJ_G0027728.1 mouse_genomes_project 3 106248612 106252279 + MGP_AJ_P0063210 Amigo1 protein_coding protein_coding MGP_AJ_T0062221.1 MGP_AJ_G0027505.1 mouse_genomes_project 3 92044462 92046591 + MGP_AJ_P0062221 C2cd4d protein_coding protein_coding MGP_AJ_T0062222.1 MGP_AJ_G0027505.1 mouse_genomes_project 3 92044527 92045189 + C2cd4d protein_coding retained_intron MGP_AJ_T0064000.1 MGP_AJ_G0027876.1 mouse_genomes_project 3 135965608 135975345 + MGP_AJ_P0064000 Lamtor3 protein_coding protein_coding MGP_AJ_T0064001.1 MGP_AJ_G0027876.1 mouse_genomes_project 3 135965628 135966617 + Lamtor3 protein_coding retained_intron MGP_AJ_T0064002.1 MGP_AJ_G0027876.1 mouse_genomes_project 3 135965628 135975899 + MGP_AJ_P0064002 Lamtor3 protein_coding protein_coding MGP_AJ_T0064003.1 MGP_AJ_G0027876.1 mouse_genomes_project 3 135965664 135975366 + Lamtor3 protein_coding processed_transcript MGP_AJ_T0064004.1 MGP_AJ_G0027876.1 mouse_genomes_project 3 135965674 135973942 + MGP_AJ_P0064004 Lamtor3 protein_coding protein_coding MGP_AJ_T0064005.1 MGP_AJ_G0027876.1 mouse_genomes_project 3 135965946 135974227 + Lamtor3 protein_coding retained_intron MGP_AJ_T0064006.1 MGP_AJ_G0027876.1 mouse_genomes_project 3 135971924 135975281 + Lamtor3 protein_coding retained_intron MGP_AJ_T0064007.1 MGP_AJ_G0027876.1 mouse_genomes_project 3 135973304 135976034 + Lamtor3 protein_coding retained_intron MGP_AJ_T0001250.1 MGP_AJ_G0001174.1 mouse_genomes_project 3 75564876 75566516 - TEC TEC MGP_AJ_T0013930.1 MGP_AJ_G0012025.1 mouse_genomes_project 3 10903111 10903366 + processed_pseudogene processed_pseudogene MGP_AJ_T0060115.1 MGP_AJ_G0027037.1 mouse_genomes_project 3 11652159 11690891 + MGP_AJ_P0060115 Lrrcc1 protein_coding protein_coding MGP_AJ_T0060116.1 MGP_AJ_G0027037.1 mouse_genomes_project 3 11652194 11686674 + MGP_AJ_P0060116 Lrrcc1 protein_coding protein_coding MGP_AJ_T0060117.1 MGP_AJ_G0027037.1 mouse_genomes_project 3 11652195 11684476 + MGP_AJ_P0060117 Lrrcc1 protein_coding protein_coding MGP_AJ_T0060118.1 MGP_AJ_G0027037.1 mouse_genomes_project 3 11652250 11680536 + MGP_AJ_P0060118 Lrrcc1 protein_coding protein_coding MGP_AJ_T0060119.1 MGP_AJ_G0027037.1 mouse_genomes_project 3 11652305 11669845 + MGP_AJ_P0060119 Lrrcc1 protein_coding nonsense_mediated_decay MGP_AJ_T0060120.1 MGP_AJ_G0027037.1 mouse_genomes_project 3 11666488 11684779 + MGP_AJ_P0060120 Lrrcc1 protein_coding protein_coding MGP_AJ_T0060121.1 MGP_AJ_G0027037.1 mouse_genomes_project 3 11666564 11672845 + MGP_AJ_P0060121 Lrrcc1 protein_coding nonsense_mediated_decay MGP_AJ_T0060122.1 MGP_AJ_G0027037.1 mouse_genomes_project 3 11668751 11677698 + MGP_AJ_P0060122 Lrrcc1 protein_coding protein_coding MGP_AJ_T0063239.1 MGP_AJ_G0027736.1 mouse_genomes_project 3 106453870 106478572 - MGP_AJ_P0063239 Celsr2 protein_coding protein_coding MGP_AJ_T0063240.1 MGP_AJ_G0027736.1 mouse_genomes_project 3 106455241 106461971 - MGP_AJ_P0063240 Celsr2 protein_coding protein_coding MGP_AJ_T0063241.1 MGP_AJ_G0027736.1 mouse_genomes_project 3 106455398 106456453 - Celsr2 protein_coding processed_transcript MGP_AJ_T0063242.1 MGP_AJ_G0027736.1 mouse_genomes_project 3 106455619 106456544 - Celsr2 protein_coding retained_intron MGP_AJ_T0063243.1 MGP_AJ_G0027736.1 mouse_genomes_project 3 106456554 106457322 - Celsr2 protein_coding retained_intron MGP_AJ_T0063244.1 MGP_AJ_G0027736.1 mouse_genomes_project 3 106458579 106459513 - Celsr2 protein_coding retained_intron MGP_AJ_T0063245.1 MGP_AJ_G0027736.1 mouse_genomes_project 3 106464279 106465609 - Celsr2 protein_coding retained_intron MGP_AJ_T0062223.1 MGP_AJ_G0027506.1 mouse_genomes_project 3 92054986 92081344 + MGP_AJ_P0062223 Rorc protein_coding protein_coding MGP_AJ_T0062224.1 MGP_AJ_G0027506.1 mouse_genomes_project 3 92059614 92081780 + MGP_AJ_P0062224 Rorc protein_coding protein_coding MGP_AJ_T0062225.1 MGP_AJ_G0027506.1 mouse_genomes_project 3 92059642 92081150 + Rorc protein_coding retained_intron MGP_AJ_T0062226.1 MGP_AJ_G0027506.1 mouse_genomes_project 3 92059698 92081152 + MGP_AJ_P0062226 Rorc protein_coding protein_coding MGP_AJ_T0014240.1 MGP_AJ_G0012335.1 mouse_genomes_project 3 105922521 105923209 - processed_pseudogene processed_pseudogene MGP_AJ_T0063912.1 MGP_AJ_G0027862.1 mouse_genomes_project 3 133330067 133365084 + MGP_AJ_P0063912 Slc9b2 protein_coding nonsense_mediated_decay MGP_AJ_T0063913.1 MGP_AJ_G0027862.1 mouse_genomes_project 3 133330098 133347293 + Slc9b2 protein_coding retained_intron MGP_AJ_T0063914.1 MGP_AJ_G0027862.1 mouse_genomes_project 3 133330109 133340827 + MGP_AJ_P0063914 Slc9b2 protein_coding protein_coding MGP_AJ_T0063915.1 MGP_AJ_G0027862.1 mouse_genomes_project 3 133330112 133367913 + MGP_AJ_P0063915 Slc9b2 protein_coding protein_coding MGP_AJ_T0063916.1 MGP_AJ_G0027862.1 mouse_genomes_project 3 133352854 133365316 + Slc9b2 protein_coding retained_intron MGP_AJ_T0063215.1 MGP_AJ_G0027730.1 mouse_genomes_project 3 106262660 106271373 - MGP_AJ_P0063215 Atxn7l2 protein_coding protein_coding MGP_AJ_T0063216.1 MGP_AJ_G0027730.1 mouse_genomes_project 3 106262666 106269013 - Atxn7l2 protein_coding retained_intron MGP_AJ_T0063217.1 MGP_AJ_G0027730.1 mouse_genomes_project 3 106262797 106270880 - MGP_AJ_P0063217 Atxn7l2 protein_coding protein_coding MGP_AJ_T0063218.1 MGP_AJ_G0027730.1 mouse_genomes_project 3 106267520 106270010 - MGP_AJ_P0063218 Atxn7l2 protein_coding protein_coding MGP_AJ_T0063219.1 MGP_AJ_G0027730.1 mouse_genomes_project 3 106269414 106270907 - Atxn7l2 protein_coding processed_transcript MGP_AJ_T0063748.1 MGP_AJ_G0027828.1 mouse_genomes_project 3 127606500 127712663 + MGP_AJ_P0063748 Elovl6 protein_coding protein_coding MGP_AJ_T0063749.1 MGP_AJ_G0027828.1 mouse_genomes_project 3 127626196 127702508 + MGP_AJ_P0063749 Elovl6 protein_coding protein_coding MGP_AJ_T0062584.1 MGP_AJ_G0027569.1 mouse_genomes_project 3 93981272 93981792 - MGP_AJ_P0062584 Hist2h2ac protein_coding protein_coding MGP_AJ_T0062137.1 MGP_AJ_G0027443.1 mouse_genomes_project 3 87966335 87967393 + MGP_AJ_P0062137 S100a8 protein_coding protein_coding MGP_AJ_T0062138.1 MGP_AJ_G0027443.1 mouse_genomes_project 3 87966668 87967322 + S100a8 protein_coding retained_intron MGP_AJ_T0001231.1 MGP_AJ_G0001155.1 mouse_genomes_project 3 57801501 57804883 + TEC TEC MGP_AJ_T0060974.1 MGP_AJ_G0027200.1 mouse_genomes_project 3 55909641 55947794 - MGP_AJ_P0060974 Clrn1 protein_coding protein_coding MGP_AJ_T0060975.1 MGP_AJ_G0027200.1 mouse_genomes_project 3 55910840 55947794 - MGP_AJ_P0060975 Clrn1 protein_coding protein_coding MGP_AJ_T0060976.1 MGP_AJ_G0027200.1 mouse_genomes_project 3 55911606 55947922 - MGP_AJ_P0060976 Clrn1 protein_coding protein_coding MGP_AJ_T0060977.1 MGP_AJ_G0027200.1 mouse_genomes_project 3 55911988 55924565 - Clrn1 protein_coding retained_intron MGP_AJ_T0061154.1 MGP_AJ_G0027244.1 mouse_genomes_project 3 64671236 64710127 - MGP_AJ_P0061154 Rarres1 protein_coding protein_coding MGP_AJ_T0062227.1 MGP_AJ_G0027507.1 mouse_genomes_project 3 92082020 92088012 + MGP_AJ_P0062227 Lingo4 protein_coding protein_coding MGP_AJ_T0014323.1 MGP_AJ_G0012418.1 mouse_genomes_project 3 132377949 132378448 - processed_pseudogene processed_pseudogene MGP_AJ_T0060984.1 MGP_AJ_G0027203.1 mouse_genomes_project 3 56174527 56191395 - MGP_AJ_P0060984 P2ry14 protein_coding protein_coding MGP_AJ_T0060985.1 MGP_AJ_G0027203.1 mouse_genomes_project 3 56175297 56214177 - MGP_AJ_P0060985 P2ry14 protein_coding protein_coding MGP_AJ_T0060986.1 MGP_AJ_G0027203.1 mouse_genomes_project 3 56175297 56191257 - MGP_AJ_P0060986 P2ry14 protein_coding protein_coding MGP_AJ_T0060987.1 MGP_AJ_G0027203.1 mouse_genomes_project 3 56175298 56191255 - MGP_AJ_P0060987 P2ry14 protein_coding protein_coding MGP_AJ_T0060988.1 MGP_AJ_G0027203.1 mouse_genomes_project 3 56175604 56191960 - MGP_AJ_P0060988 P2ry14 protein_coding protein_coding MGP_AJ_T0060989.1 MGP_AJ_G0027203.1 mouse_genomes_project 3 56176379 56191846 - MGP_AJ_P0060989 P2ry14 protein_coding protein_coding MGP_AJ_T0060990.1 MGP_AJ_G0027203.1 mouse_genomes_project 3 56176683 56191751 - MGP_AJ_P0060990 P2ry14 protein_coding protein_coding MGP_AJ_T0060991.1 MGP_AJ_G0027203.1 mouse_genomes_project 3 56176698 56193087 - MGP_AJ_P0060991 P2ry14 protein_coding protein_coding MGP_AJ_T0060992.1 MGP_AJ_G0027203.1 mouse_genomes_project 3 56206512 56214303 - P2ry14 protein_coding retained_intron MGP_AJ_T0014340.1 MGP_AJ_G0012435.1 mouse_genomes_project 3 136535573 136535799 - processed_pseudogene processed_pseudogene MGP_AJ_T0001392.1 MGP_AJ_G0001315.1 mouse_genomes_project 3 154959380 154960712 + TEC TEC MGP_AJ_T0062109.1 MGP_AJ_G0027434.1 mouse_genomes_project 3 87821943 87823318 + MGP_AJ_P0062109 S100a14 protein_coding protein_coding MGP_AJ_T0062110.1 MGP_AJ_G0027434.1 mouse_genomes_project 3 87821954 87823925 + MGP_AJ_P0062110 S100a14 protein_coding protein_coding MGP_AJ_T0062111.1 MGP_AJ_G0027434.1 mouse_genomes_project 3 87821957 87823925 + MGP_AJ_P0062111 S100a14 protein_coding protein_coding MGP_AJ_T0062112.1 MGP_AJ_G0027434.1 mouse_genomes_project 3 87821959 87823914 + S100a14 protein_coding retained_intron MGP_AJ_T0014148.1 MGP_AJ_G0012243.1 mouse_genomes_project 3 81660063 81660648 - processed_pseudogene processed_pseudogene MGP_AJ_T0062184.1 MGP_AJ_G0027481.1 mouse_genomes_project 3 90274884 90276977 - MGP_AJ_P0062184 Lce1g protein_coding protein_coding MGP_AJ_T0098841.1 MGP_AJ_G0036825.1 mouse_genomes_project 3 106620476 106620890 - Scarna2 scaRNA scaRNA MGP_AJ_T0001357.1 MGP_AJ_G0001280.1 mouse_genomes_project 3 131048532 131050373 - TEC TEC MGP_AJ_T0001305.1 MGP_AJ_G0001229.1 mouse_genomes_project 3 119797094 119798902 - TEC TEC MGP_AJ_T0061436.1 MGP_AJ_G0027314.1 mouse_genomes_project 3 82987962 83005796 - MGP_AJ_P0061436 Glt28d2 protein_coding protein_coding MGP_AJ_T0102566.1 MGP_AJ_G0040308.1 mouse_genomes_project 3 104397165 104398267 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0098971.1 MGP_AJ_G0036948.1 mouse_genomes_project 3 98536706 98540348 - Gm43462 sense_intronic sense_intronic MGP_AJ_T0001376.1 MGP_AJ_G0001299.1 mouse_genomes_project 3 149278709 149284692 - TEC TEC MGP_AJ_T0001209.1 MGP_AJ_G0001133.1 mouse_genomes_project 3 50114750 50117414 + TEC TEC MGP_AJ_T0064008.1 MGP_AJ_G0027877.1 mouse_genomes_project 3 135973796 135975840 + MGP_AJ_P0064008 protein_coding protein_coding MGP_AJ_T0014229.1 MGP_AJ_G0012324.1 mouse_genomes_project 3 101852050 101852514 - processed_pseudogene processed_pseudogene MGP_AJ_T0014002.1 MGP_AJ_G0012097.1 mouse_genomes_project 3 34881602 34881977 + processed_pseudogene processed_pseudogene MGP_AJ_T0001322.1 MGP_AJ_G0001246.1 mouse_genomes_project 3 124692341 124693983 + TEC TEC MGP_AJ_T0101781.1 MGP_AJ_G0039700.1 mouse_genomes_project 3 52916957 52917921 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0101782.1 MGP_AJ_G0039700.1 mouse_genomes_project 3 52917116 52918253 + transcribed_processed_pseudogene processed_transcript MGP_AJ_T0007628.1 MGP_AJ_G0006235.1 mouse_genomes_project 3 93134206 93145562 - lincRNA lincRNA MGP_AJ_T0101120.1 MGP_AJ_G0039086.1 mouse_genomes_project 3 47845418 47845553 - Gm24503 snoRNA snoRNA MGP_AJ_T0007593.1 MGP_AJ_G0006213.1 mouse_genomes_project 3 79842400 79847623 + Gm30043 lincRNA lincRNA MGP_AJ_T0014030.1 MGP_AJ_G0012125.1 mouse_genomes_project 3 44513123 44513833 - processed_pseudogene processed_pseudogene MGP_AJ_T0001131.1 MGP_AJ_G0001057.1 mouse_genomes_project 3 27397472 27399536 - TEC TEC MGP_AJ_T0014330.1 MGP_AJ_G0012425.1 mouse_genomes_project 3 133513050 133513379 + processed_pseudogene processed_pseudogene MGP_AJ_T0007617.1 MGP_AJ_G0006226.1 mouse_genomes_project 3 85700101 85701375 - Gm37584 lincRNA lincRNA MGP_AJ_T0001155.1 MGP_AJ_G0001081.1 mouse_genomes_project 3 34789174 34792649 + TEC TEC MGP_AJ_T0014040.1 MGP_AJ_G0012135.1 mouse_genomes_project 3 47657072 47657448 - processed_pseudogene processed_pseudogene MGP_AJ_T0007760.1 MGP_AJ_G0006345.1 mouse_genomes_project 3 142384115 142385650 + Gm43447 lincRNA lincRNA MGP_AJ_T0099017.1 MGP_AJ_G0036994.1 mouse_genomes_project 3 151499194 151501340 - 1700012D16Rik sense_intronic sense_intronic MGP_AJ_T0014184.1 MGP_AJ_G0012279.1 mouse_genomes_project 3 92136633 92138172 + processed_pseudogene processed_pseudogene MGP_AJ_T0101123.1 MGP_AJ_G0039089.1 mouse_genomes_project 3 53474696 53474827 - Gm25727 snoRNA snoRNA MGP_AJ_T0099132.1 MGP_AJ_G0037099.1 mouse_genomes_project 3 89572763 89612460 - 4930511M18Rik sense_overlapping sense_overlapping MGP_AJ_T0062392.1 MGP_AJ_G0027535.1 mouse_genomes_project 3 92970747 92978449 + MGP_AJ_P0062392 Cdc42se1 protein_coding protein_coding MGP_AJ_T0062393.1 MGP_AJ_G0027535.1 mouse_genomes_project 3 92970825 92974421 + Cdc42se1 protein_coding retained_intron MGP_AJ_T0062394.1 MGP_AJ_G0027535.1 mouse_genomes_project 3 92970967 92976622 + MGP_AJ_P0062394 Cdc42se1 protein_coding protein_coding MGP_AJ_T0062396.1 MGP_AJ_G0027535.1 mouse_genomes_project 3 92974326 92976580 + MGP_AJ_P0062396 Cdc42se1 protein_coding protein_coding MGP_AJ_T0062397.1 MGP_AJ_G0027535.1 mouse_genomes_project 3 92974332 92976702 + MGP_AJ_P0062397 Cdc42se1 protein_coding protein_coding MGP_AJ_T0007478.1 MGP_AJ_G0006122.1 mouse_genomes_project 3 15568519 15580743 - 4930433B08Rik lincRNA lincRNA MGP_AJ_T0014023.1 MGP_AJ_G0012118.1 mouse_genomes_project 3 42703257 42703618 - processed_pseudogene processed_pseudogene MGP_AJ_T0001150.1 MGP_AJ_G0001076.1 mouse_genomes_project 3 33675622 33678732 - TEC TEC MGP_AJ_T0007501.1 MGP_AJ_G0006143.1 mouse_genomes_project 3 31637126 31637906 - Gm29135 lincRNA lincRNA MGP_AJ_T0013989.1 MGP_AJ_G0012084.1 mouse_genomes_project 3 33356991 33357947 - processed_pseudogene processed_pseudogene MGP_AJ_T0013999.1 MGP_AJ_G0012094.1 mouse_genomes_project 3 34477649 34477968 + processed_pseudogene processed_pseudogene MGP_AJ_T0013941.1 MGP_AJ_G0012036.1 mouse_genomes_project 3 14340306 14340640 - processed_pseudogene processed_pseudogene MGP_AJ_T0062196.1 MGP_AJ_G0027492.1 mouse_genomes_project 3 90573685 90575168 - MGP_AJ_P0062196 Crct1 protein_coding protein_coding MGP_AJ_T0062197.1 MGP_AJ_G0027492.1 mouse_genomes_project 3 90573999 90575150 - MGP_AJ_P0062197 Crct1 protein_coding protein_coding MGP_AJ_T0060316.1 MGP_AJ_G0027080.1 mouse_genomes_project 3 27081101 27144951 - MGP_AJ_P0060316 Mecom protein_coding protein_coding MGP_AJ_T0060317.1 MGP_AJ_G0027080.1 mouse_genomes_project 3 27081104 27637787 - MGP_AJ_P0060317 Mecom protein_coding protein_coding MGP_AJ_T0060318.1 MGP_AJ_G0027080.1 mouse_genomes_project 3 27081111 27145300 - MGP_AJ_P0060318 Mecom protein_coding protein_coding MGP_AJ_T0060319.1 MGP_AJ_G0027080.1 mouse_genomes_project 3 27081112 27265184 - MGP_AJ_P0060319 Mecom protein_coding protein_coding MGP_AJ_T0060320.1 MGP_AJ_G0027080.1 mouse_genomes_project 3 27082372 27362558 - MGP_AJ_P0060320 Mecom protein_coding protein_coding MGP_AJ_T0060321.1 MGP_AJ_G0027080.1 mouse_genomes_project 3 27082521 27128944 - MGP_AJ_P0060321 Mecom protein_coding protein_coding MGP_AJ_T0060322.1 MGP_AJ_G0027080.1 mouse_genomes_project 3 27082587 27128983 - MGP_AJ_P0060322 Mecom protein_coding protein_coding MGP_AJ_T0060323.1 MGP_AJ_G0027080.1 mouse_genomes_project 3 27093002 27637558 - MGP_AJ_P0060323 Mecom protein_coding protein_coding MGP_AJ_T0060324.1 MGP_AJ_G0027080.1 mouse_genomes_project 3 27095422 27637876 - MGP_AJ_P0060324 Mecom protein_coding protein_coding MGP_AJ_T0060325.1 MGP_AJ_G0027080.1 mouse_genomes_project 3 27107543 27676160 - MGP_AJ_P0060325 Mecom protein_coding nonsense_mediated_decay MGP_AJ_T0060326.1 MGP_AJ_G0027080.1 mouse_genomes_project 3 27114240 27144856 - Mecom protein_coding processed_transcript MGP_AJ_T0060327.1 MGP_AJ_G0027080.1 mouse_genomes_project 3 27114240 27144999 - Mecom protein_coding retained_intron MGP_AJ_T0060328.1 MGP_AJ_G0027080.1 mouse_genomes_project 3 27129009 27143233 - MGP_AJ_P0060328 Mecom protein_coding protein_coding MGP_AJ_T0060329.1 MGP_AJ_G0027080.1 mouse_genomes_project 3 27146786 27637787 - Mecom protein_coding processed_transcript MGP_AJ_T0060330.1 MGP_AJ_G0027080.1 mouse_genomes_project 3 27359832 27362356 - Mecom protein_coding retained_intron MGP_AJ_T0060331.1 MGP_AJ_G0027080.1 mouse_genomes_project 3 27360958 27637531 - Mecom protein_coding processed_transcript MGP_AJ_T0060332.1 MGP_AJ_G0027080.1 mouse_genomes_project 3 27362367 27362715 - MGP_AJ_P0060332 Mecom protein_coding protein_coding MGP_AJ_T0061294.1 MGP_AJ_G0027278.1 mouse_genomes_project 3 76754827 76850978 - MGP_AJ_P0061294 Rxfp1 protein_coding protein_coding MGP_AJ_T0061295.1 MGP_AJ_G0027278.1 mouse_genomes_project 3 76757320 76851064 - MGP_AJ_P0061295 Rxfp1 protein_coding nonsense_mediated_decay MGP_AJ_T0061296.1 MGP_AJ_G0027278.1 mouse_genomes_project 3 76764855 76766738 - Rxfp1 protein_coding retained_intron MGP_AJ_T0061297.1 MGP_AJ_G0027278.1 mouse_genomes_project 3 76768519 76781007 - Rxfp1 protein_coding processed_transcript MGP_AJ_T0098974.1 MGP_AJ_G0036951.1 mouse_genomes_project 3 99335508 99337697 + Gm42939 sense_intronic sense_intronic MGP_AJ_T0062187.1 MGP_AJ_G0027484.1 mouse_genomes_project 3 90315266 90316941 - MGP_AJ_P0062187 Lce1j protein_coding protein_coding MGP_AJ_T0062188.1 MGP_AJ_G0027484.1 mouse_genomes_project 3 90315476 90315896 - MGP_AJ_P0062188 Lce1j protein_coding protein_coding MGP_AJ_T0014267.1 MGP_AJ_G0012362.1 mouse_genomes_project 3 112562405 112562757 - processed_pseudogene processed_pseudogene MGP_AJ_T0014079.1 MGP_AJ_G0012174.1 mouse_genomes_project 3 59944176 59944758 + processed_pseudogene processed_pseudogene MGP_AJ_T0098443.1 MGP_AJ_G0036427.1 mouse_genomes_project 3 82080860 82081385 - pseudogene pseudogene MGP_AJ_T0014215.1 MGP_AJ_G0012310.1 mouse_genomes_project 3 99132841 99133381 - processed_pseudogene processed_pseudogene MGP_AJ_T0014203.1 MGP_AJ_G0012298.1 mouse_genomes_project 3 96058654 96059143 + processed_pseudogene processed_pseudogene MGP_AJ_T0101790.1 MGP_AJ_G0039703.1 mouse_genomes_project 3 92105155 92105929 - transcribed_processed_pseudogene processed_transcript MGP_AJ_T0101791.1 MGP_AJ_G0039703.1 mouse_genomes_project 3 92105346 92105763 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0102547.1 MGP_AJ_G0040289.1 mouse_genomes_project 3 85648875 85649446 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0001140.1 MGP_AJ_G0001066.1 mouse_genomes_project 3 30583693 30585159 - TEC TEC MGP_AJ_T0001108.1 MGP_AJ_G0001035.1 mouse_genomes_project 3 2350022 2352446 + TEC TEC MGP_AJ_T0001109.1 MGP_AJ_G0001035.1 mouse_genomes_project 3 2351992 2352325 + TEC TEC MGP_AJ_T0062193.1 MGP_AJ_G0027489.1 mouse_genomes_project 3 90452287 90453952 - MGP_AJ_P0062193 Lce3a protein_coding protein_coding MGP_AJ_T0007731.1 MGP_AJ_G0006321.1 mouse_genomes_project 3 136047995 136063090 + Gm19708 lincRNA lincRNA MGP_AJ_T0013894.1 MGP_AJ_G0011989.1 mouse_genomes_project 3 1032943 1033262 + processed_pseudogene processed_pseudogene MGP_AJ_T0007714.1 MGP_AJ_G0006305.1 mouse_genomes_project 3 130840511 130877289 - Gm29811 lincRNA lincRNA MGP_AJ_T0007468.1 MGP_AJ_G0006118.1 mouse_genomes_project 3 12241969 12261121 - Gm33819 lincRNA lincRNA MGP_AJ_T0064471.1 MGP_AJ_G0027962.1 mouse_genomes_project 3 152809110 152820925 - Tyw3 protein_coding processed_transcript MGP_AJ_T0064472.1 MGP_AJ_G0027962.1 mouse_genomes_project 3 152809343 152823460 - MGP_AJ_P0064472 Tyw3 protein_coding protein_coding MGP_AJ_T0064473.1 MGP_AJ_G0027962.1 mouse_genomes_project 3 152813951 152823494 - MGP_AJ_P0064473 Tyw3 protein_coding protein_coding MGP_AJ_T0062349.1 MGP_AJ_G0027527.1 mouse_genomes_project 3 92862695 92865654 + MGP_AJ_P0062349 Tmod4 protein_coding protein_coding MGP_AJ_T0062350.1 MGP_AJ_G0027527.1 mouse_genomes_project 3 92862733 92868311 + MGP_AJ_P0062350 Tmod4 protein_coding protein_coding MGP_AJ_T0062351.1 MGP_AJ_G0027527.1 mouse_genomes_project 3 92862734 92868307 + MGP_AJ_P0062351 Tmod4 protein_coding protein_coding MGP_AJ_T0062352.1 MGP_AJ_G0027527.1 mouse_genomes_project 3 92864423 92867846 + Tmod4 protein_coding retained_intron MGP_AJ_T0062353.1 MGP_AJ_G0027527.1 mouse_genomes_project 3 92865170 92865867 + Tmod4 protein_coding processed_transcript MGP_AJ_T0062354.1 MGP_AJ_G0027527.1 mouse_genomes_project 3 92865653 92868310 + Tmod4 protein_coding retained_intron MGP_AJ_T0061894.1 MGP_AJ_G0027397.1 mouse_genomes_project 3 86596632 86611673 - MGP_AJ_P0061894 Dcst1 protein_coding protein_coding MGP_AJ_T0061895.1 MGP_AJ_G0027397.1 mouse_genomes_project 3 86597436 86601960 - Dcst1 protein_coding retained_intron MGP_AJ_T0061896.1 MGP_AJ_G0027397.1 mouse_genomes_project 3 86599134 86601930 - Dcst1 protein_coding processed_transcript MGP_AJ_T0061897.1 MGP_AJ_G0027397.1 mouse_genomes_project 3 86600042 86601312 - Dcst1 protein_coding retained_intron MGP_AJ_T0061898.1 MGP_AJ_G0027397.1 mouse_genomes_project 3 86603921 86610682 - Dcst1 protein_coding retained_intron MGP_AJ_T0061899.1 MGP_AJ_G0027397.1 mouse_genomes_project 3 86604006 86610683 - Dcst1 protein_coding retained_intron MGP_AJ_T0062664.1 MGP_AJ_G0027597.1 mouse_genomes_project 3 94635720 94673172 - MGP_AJ_P0062664 Gpr89 protein_coding protein_coding MGP_AJ_T0062665.1 MGP_AJ_G0027597.1 mouse_genomes_project 3 94636030 94661177 - Gpr89 protein_coding processed_transcript MGP_AJ_T0062666.1 MGP_AJ_G0027597.1 mouse_genomes_project 3 94638925 94643645 - Gpr89 protein_coding retained_intron MGP_AJ_T0062667.1 MGP_AJ_G0027597.1 mouse_genomes_project 3 94648038 94666794 - Gpr89 protein_coding processed_transcript MGP_AJ_T0062668.1 MGP_AJ_G0027597.1 mouse_genomes_project 3 94649927 94665686 - Gpr89 protein_coding processed_transcript MGP_AJ_T0062669.1 MGP_AJ_G0027597.1 mouse_genomes_project 3 94649927 94673138 - MGP_AJ_P0062669 Gpr89 protein_coding nonsense_mediated_decay MGP_AJ_T0004326.1 MGP_AJ_G0003787.1 mouse_genomes_project 3 101912870 101916916 - Phtf1os antisense antisense MGP_AJ_T0062177.1 MGP_AJ_G0027474.1 mouse_genomes_project 3 90183205 90184589 - MGP_AJ_P0062177 Lce1b protein_coding protein_coding MGP_AJ_T0061479.1 MGP_AJ_G0027327.1 mouse_genomes_project 3 84569300 84602830 + MGP_AJ_P0061479 Fcrl5 protein_coding protein_coding MGP_AJ_T0061480.1 MGP_AJ_G0027327.1 mouse_genomes_project 3 84569340 84641042 + MGP_AJ_P0061480 Fcrl5 protein_coding protein_coding MGP_AJ_T0061481.1 MGP_AJ_G0027327.1 mouse_genomes_project 3 84569412 84591725 + MGP_AJ_P0061481 Fcrl5 protein_coding protein_coding MGP_AJ_T0061482.1 MGP_AJ_G0027327.1 mouse_genomes_project 3 84569412 84591725 + MGP_AJ_P0061482 Fcrl5 protein_coding protein_coding MGP_AJ_T0061483.1 MGP_AJ_G0027327.1 mouse_genomes_project 3 84569412 84591725 + MGP_AJ_P0061483 Fcrl5 protein_coding protein_coding MGP_AJ_T0001347.1 MGP_AJ_G0001270.1 mouse_genomes_project 3 128635217 128637116 + TEC TEC MGP_AJ_T0007759.1 MGP_AJ_G0006344.1 mouse_genomes_project 3 142346046 142347142 + Gm43446 lincRNA lincRNA MGP_AJ_T0061936.1 MGP_AJ_G0027406.1 mouse_genomes_project 3 86708909 86719205 + MGP_AJ_P0061936 Pmvk protein_coding protein_coding MGP_AJ_T0061937.1 MGP_AJ_G0027406.1 mouse_genomes_project 3 86708948 86719217 + MGP_AJ_P0061937 Pmvk protein_coding protein_coding MGP_AJ_T0061938.1 MGP_AJ_G0027406.1 mouse_genomes_project 3 86709149 86719207 + MGP_AJ_P0061938 Pmvk protein_coding protein_coding MGP_AJ_T0064009.1 MGP_AJ_G0027878.1 mouse_genomes_project 3 135978133 136028664 - MGP_AJ_P0064009 Dapp1 protein_coding protein_coding MGP_AJ_T0064010.1 MGP_AJ_G0027878.1 mouse_genomes_project 3 135978134 136028655 - MGP_AJ_P0064010 Dapp1 protein_coding protein_coding MGP_AJ_T0064011.1 MGP_AJ_G0027878.1 mouse_genomes_project 3 135979829 136002816 - Dapp1 protein_coding processed_transcript MGP_AJ_T0064012.1 MGP_AJ_G0027878.1 mouse_genomes_project 3 135980132 136001660 - Dapp1 protein_coding processed_transcript MGP_AJ_T0064013.1 MGP_AJ_G0027878.1 mouse_genomes_project 3 135980243 136028649 - Dapp1 protein_coding processed_transcript MGP_AJ_T0064014.1 MGP_AJ_G0027878.1 mouse_genomes_project 3 135996673 136001660 - Dapp1 protein_coding processed_transcript MGP_AJ_T0064015.1 MGP_AJ_G0027878.1 mouse_genomes_project 3 136027823 136028655 - Dapp1 protein_coding retained_intron MGP_AJ_T0064452.1 MGP_AJ_G0027959.1 mouse_genomes_project 3 152139616 152161553 - MGP_AJ_P0064452 Acadm protein_coding protein_coding MGP_AJ_T0064453.1 MGP_AJ_G0027959.1 mouse_genomes_project 3 152142926 152147109 - Acadm protein_coding retained_intron MGP_AJ_T0064454.1 MGP_AJ_G0027959.1 mouse_genomes_project 3 152143067 152154730 - Acadm protein_coding retained_intron MGP_AJ_T0064455.1 MGP_AJ_G0027959.1 mouse_genomes_project 3 152147090 152153714 - Acadm protein_coding retained_intron MGP_AJ_T0064456.1 MGP_AJ_G0027959.1 mouse_genomes_project 3 152153228 152155595 - Acadm protein_coding retained_intron MGP_AJ_T0064457.1 MGP_AJ_G0027959.1 mouse_genomes_project 3 152153234 152161388 - MGP_AJ_P0064457 Acadm protein_coding nonsense_mediated_decay MGP_AJ_T0064458.1 MGP_AJ_G0027959.1 mouse_genomes_project 3 152153288 152161367 - MGP_AJ_P0064458 Acadm protein_coding protein_coding MGP_AJ_T0064459.1 MGP_AJ_G0027959.1 mouse_genomes_project 3 152155215 152161363 - Acadm protein_coding retained_intron MGP_AJ_T0064460.1 MGP_AJ_G0027959.1 mouse_genomes_project 3 152155577 152158824 - Acadm protein_coding retained_intron MGP_AJ_T0064461.1 MGP_AJ_G0027959.1 mouse_genomes_project 3 152158522 152161384 - Acadm protein_coding retained_intron MGP_AJ_T0063630.1 MGP_AJ_G0027812.1 mouse_genomes_project 3 122433859 122460648 - MGP_AJ_P0063630 1700006A11Rik protein_coding protein_coding MGP_AJ_T0063631.1 MGP_AJ_G0027812.1 mouse_genomes_project 3 122434094 122460599 - MGP_AJ_P0063631 1700006A11Rik protein_coding nonsense_mediated_decay MGP_AJ_T0007713.1 MGP_AJ_G0006304.1 mouse_genomes_project 3 130434390 130436619 - Gm42880 lincRNA lincRNA MGP_AJ_T0014206.1 MGP_AJ_G0012301.1 mouse_genomes_project 3 96967939 96968523 - processed_pseudogene processed_pseudogene MGP_AJ_T0004377.1 MGP_AJ_G0003819.1 mouse_genomes_project 3 129175957 129178933 - Gm43352 antisense antisense MGP_AJ_T0060203.1 MGP_AJ_G0027059.1 mouse_genomes_project 3 17187034 17250317 + MGP_AJ_P0060203 Hltf protein_coding nonsense_mediated_decay MGP_AJ_T0060204.1 MGP_AJ_G0027059.1 mouse_genomes_project 3 17187034 17251526 + MGP_AJ_P0060204 Hltf protein_coding protein_coding MGP_AJ_T0060205.1 MGP_AJ_G0027059.1 mouse_genomes_project 3 17187043 17239175 + Hltf protein_coding retained_intron MGP_AJ_T0060206.1 MGP_AJ_G0027059.1 mouse_genomes_project 3 17187076 17193398 + Hltf protein_coding retained_intron MGP_AJ_T0060207.1 MGP_AJ_G0027059.1 mouse_genomes_project 3 17187492 17251512 + MGP_AJ_P0060207 Hltf protein_coding nonsense_mediated_decay MGP_AJ_T0060208.1 MGP_AJ_G0027059.1 mouse_genomes_project 3 17239107 17251526 + Hltf protein_coding retained_intron MGP_AJ_T0014301.1 MGP_AJ_G0012396.1 mouse_genomes_project 3 124297256 124298502 + processed_pseudogene processed_pseudogene MGP_AJ_T0102540.1 MGP_AJ_G0040282.1 mouse_genomes_project 3 67763523 67764558 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0062588.1 MGP_AJ_G0027573.1 mouse_genomes_project 3 94027194 94028832 - MGP_AJ_P0062588 Hist2h4 protein_coding protein_coding MGP_AJ_T0013966.1 MGP_AJ_G0012061.1 mouse_genomes_project 3 22255399 22255579 - processed_pseudogene processed_pseudogene MGP_AJ_T0101172.1 MGP_AJ_G0039138.1 mouse_genomes_project 3 146489253 146489385 - Gm23131 snoRNA snoRNA MGP_AJ_T0101134.1 MGP_AJ_G0039100.1 mouse_genomes_project 3 83071282 83071401 + Gm25876 snoRNA snoRNA MGP_AJ_T0099834.1 MGP_AJ_G0037800.1 mouse_genomes_project 3 63017661 63017768 - Gm25755 snRNA snRNA MGP_AJ_T0062732.1 MGP_AJ_G0027614.1 mouse_genomes_project 3 96194161 96637327 + Zfp697 protein_coding processed_transcript MGP_AJ_T0062733.1 MGP_AJ_G0027614.1 mouse_genomes_project 3 96194181 96231047 + Zfp697 protein_coding processed_transcript MGP_AJ_T0062734.1 MGP_AJ_G0027614.1 mouse_genomes_project 3 96194181 96252126 + MGP_AJ_P0062734 Zfp697 protein_coding protein_coding MGP_AJ_T0062735.1 MGP_AJ_G0027614.1 mouse_genomes_project 3 96194248 96251882 + MGP_AJ_P0062735 Zfp697 protein_coding protein_coding MGP_AJ_T0101149.1 MGP_AJ_G0039115.1 mouse_genomes_project 3 96991972 96992089 - Gm24216 snoRNA snoRNA MGP_AJ_T0014211.1 MGP_AJ_G0012306.1 mouse_genomes_project 3 97986582 97986750 - processed_pseudogene processed_pseudogene MGP_AJ_T0013970.1 MGP_AJ_G0012065.1 mouse_genomes_project 3 24404929 24405317 + processed_pseudogene processed_pseudogene MGP_AJ_T0099827.1 MGP_AJ_G0037793.1 mouse_genomes_project 3 55348407 55348514 - Gm26166 snRNA snRNA MGP_AJ_T0007484.1 MGP_AJ_G0006127.1 mouse_genomes_project 3 19230275 19232006 - Gm43672 lincRNA lincRNA MGP_AJ_T0001190.1 MGP_AJ_G0001116.1 mouse_genomes_project 3 48573395 48575565 - TEC TEC MGP_AJ_T0061128.1 MGP_AJ_G0027238.1 mouse_genomes_project 3 64178865 64188545 - MGP_AJ_P0061128 Shox2 protein_coding protein_coding MGP_AJ_T0061129.1 MGP_AJ_G0027238.1 mouse_genomes_project 3 64178874 64188601 - MGP_AJ_P0061129 Shox2 protein_coding protein_coding MGP_AJ_T0061130.1 MGP_AJ_G0027238.1 mouse_genomes_project 3 64178929 64189054 - MGP_AJ_P0061130 Shox2 protein_coding protein_coding MGP_AJ_T0061131.1 MGP_AJ_G0027238.1 mouse_genomes_project 3 64181045 64185977 - MGP_AJ_P0061131 Shox2 protein_coding protein_coding MGP_AJ_T0102559.1 MGP_AJ_G0040301.1 mouse_genomes_project 3 91827022 91827432 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0004212.1 MGP_AJ_G0003707.1 mouse_genomes_project 3 27927196 27928167 - 4933429H19Rik antisense antisense MGP_AJ_T0004213.1 MGP_AJ_G0003707.1 mouse_genomes_project 3 27927740 27928163 - 4933429H19Rik antisense antisense MGP_AJ_T0061420.1 MGP_AJ_G0027311.1 mouse_genomes_project 3 81929392 82095004 + MGP_AJ_P0061420 Fbxw7 protein_coding protein_coding MGP_AJ_T0061421.1 MGP_AJ_G0027311.1 mouse_genomes_project 3 81929602 82093488 + Fbxw7 protein_coding retained_intron MGP_AJ_T0061422.1 MGP_AJ_G0027311.1 mouse_genomes_project 3 81979645 82095004 + MGP_AJ_P0061422 Fbxw7 protein_coding protein_coding MGP_AJ_T0061423.1 MGP_AJ_G0027311.1 mouse_genomes_project 3 82041392 82095003 + MGP_AJ_P0061423 Fbxw7 protein_coding protein_coding MGP_AJ_T0061424.1 MGP_AJ_G0027311.1 mouse_genomes_project 3 82068034 82093451 + MGP_AJ_P0061424 Fbxw7 protein_coding protein_coding MGP_AJ_T0001238.1 MGP_AJ_G0001162.1 mouse_genomes_project 3 64669242 64671083 + TEC TEC MGP_AJ_T0014242.1 MGP_AJ_G0012337.1 mouse_genomes_project 3 106035486 106035723 + processed_pseudogene processed_pseudogene MGP_AJ_T0007661.1 MGP_AJ_G0006263.1 mouse_genomes_project 3 104864287 104912321 - Gm35507 lincRNA lincRNA MGP_AJ_T0001339.1 MGP_AJ_G0001263.1 mouse_genomes_project 3 125908078 125908758 - TEC TEC MGP_AJ_T0060231.1 MGP_AJ_G0027065.1 mouse_genomes_project 3 20916904 21877974 - MGP_AJ_P0060231 Naaladl2 protein_coding protein_coding MGP_AJ_T0060232.1 MGP_AJ_G0027065.1 mouse_genomes_project 3 20923137 21056059 - Naaladl2 protein_coding processed_transcript MGP_AJ_T0060233.1 MGP_AJ_G0027065.1 mouse_genomes_project 3 20923787 21086530 - Naaladl2 protein_coding processed_transcript MGP_AJ_T0060234.1 MGP_AJ_G0027065.1 mouse_genomes_project 3 21645603 22214717 - Naaladl2 protein_coding retained_intron MGP_AJ_T0007518.1 MGP_AJ_G0006158.1 mouse_genomes_project 3 35336860 35341785 - 5430434I15Rik lincRNA lincRNA MGP_AJ_T0007503.1 MGP_AJ_G0006145.1 mouse_genomes_project 3 31746144 31749864 - Gm43207 lincRNA lincRNA MGP_AJ_T0061122.1 MGP_AJ_G0027236.1 mouse_genomes_project 3 63305599 63528717 - MGP_AJ_P0061122 Veph1 protein_coding protein_coding MGP_AJ_T0061123.1 MGP_AJ_G0027236.1 mouse_genomes_project 3 63308675 63386955 - Veph1 protein_coding processed_transcript MGP_AJ_T0061124.1 MGP_AJ_G0027236.1 mouse_genomes_project 3 63309143 63466011 - MGP_AJ_P0061124 Veph1 protein_coding unknown_likely_coding MGP_AJ_T0061127.1 MGP_AJ_G0027236.1 mouse_genomes_project 3 63489558 63528628 - Veph1 protein_coding retained_intron MGP_AJ_T0001297.1 MGP_AJ_G0001221.1 mouse_genomes_project 3 116602791 116606922 + TEC TEC MGP_AJ_T0099009.1 MGP_AJ_G0036986.1 mouse_genomes_project 3 103731651 103733804 - Gm43330 sense_intronic sense_intronic MGP_AJ_T0007575.1 MGP_AJ_G0006199.1 mouse_genomes_project 3 70258114 70377736 + lincRNA lincRNA MGP_AJ_T0007576.1 MGP_AJ_G0006199.1 mouse_genomes_project 3 70258149 70787074 + lincRNA lincRNA MGP_AJ_T0007509.1 MGP_AJ_G0006150.1 mouse_genomes_project 3 33416669 33419003 - Gm43204 lincRNA lincRNA MGP_AJ_T0014084.1 MGP_AJ_G0012179.1 mouse_genomes_project 3 61069246 61069536 + processed_pseudogene processed_pseudogene MGP_AJ_T0099875.1 MGP_AJ_G0037841.1 mouse_genomes_project 3 129904695 129904789 + Gm26103 snRNA snRNA MGP_AJ_T0014369.1 MGP_AJ_G0012464.1 mouse_genomes_project 3 145329352 145329801 - processed_pseudogene processed_pseudogene MGP_AJ_T0062419.1 MGP_AJ_G0027540.1 mouse_genomes_project 3 93037886 93049171 - MGP_AJ_P0062419 Anxa9 protein_coding protein_coding MGP_AJ_T0062420.1 MGP_AJ_G0027540.1 mouse_genomes_project 3 93037886 93049543 - MGP_AJ_P0062420 Anxa9 protein_coding protein_coding MGP_AJ_T0062421.1 MGP_AJ_G0027540.1 mouse_genomes_project 3 93038088 93049171 - MGP_AJ_P0062421 Anxa9 protein_coding protein_coding MGP_AJ_T0062422.1 MGP_AJ_G0027540.1 mouse_genomes_project 3 93048299 93049171 - MGP_AJ_P0062422 Anxa9 protein_coding protein_coding MGP_AJ_T0060690.1 MGP_AJ_G0027145.1 mouse_genomes_project 3 38113958 38131372 - MGP_AJ_P0060690 Pgrmc2 protein_coding protein_coding MGP_AJ_T0060691.1 MGP_AJ_G0027145.1 mouse_genomes_project 3 38116152 38118303 - Pgrmc2 protein_coding retained_intron MGP_AJ_T0014258.1 MGP_AJ_G0012353.1 mouse_genomes_project 3 110325865 110326652 + processed_pseudogene processed_pseudogene MGP_AJ_T0060649.1 MGP_AJ_G0027140.1 mouse_genomes_project 3 37819152 37836570 + MGP_AJ_P0060649 Plk4 protein_coding protein_coding MGP_AJ_T0060650.1 MGP_AJ_G0027140.1 mouse_genomes_project 3 37819161 37828100 + Plk4 protein_coding retained_intron MGP_AJ_T0060651.1 MGP_AJ_G0027140.1 mouse_genomes_project 3 37819175 37820757 + Plk4 protein_coding retained_intron MGP_AJ_T0060652.1 MGP_AJ_G0027140.1 mouse_genomes_project 3 37819175 37836438 + MGP_AJ_P0060652 Plk4 protein_coding nonsense_mediated_decay MGP_AJ_T0060653.1 MGP_AJ_G0027140.1 mouse_genomes_project 3 37819183 37825163 + Plk4 protein_coding retained_intron MGP_AJ_T0060654.1 MGP_AJ_G0027140.1 mouse_genomes_project 3 37819187 37836570 + MGP_AJ_P0060654 Plk4 protein_coding protein_coding MGP_AJ_T0060655.1 MGP_AJ_G0027140.1 mouse_genomes_project 3 37819387 37836104 + MGP_AJ_P0060655 Plk4 protein_coding protein_coding MGP_AJ_T0060656.1 MGP_AJ_G0027140.1 mouse_genomes_project 3 37819914 37824111 + MGP_AJ_P0060656 Plk4 protein_coding protein_coding MGP_AJ_T0060657.1 MGP_AJ_G0027140.1 mouse_genomes_project 3 37820596 37821178 + Plk4 protein_coding retained_intron MGP_AJ_T0060658.1 MGP_AJ_G0027140.1 mouse_genomes_project 3 37832424 37836569 + MGP_AJ_P0060658 Plk4 protein_coding protein_coding MGP_AJ_T0061248.1 MGP_AJ_G0027269.1 mouse_genomes_project 3 72703968 72789857 + MGP_AJ_P0061248 Serpini1 protein_coding protein_coding MGP_AJ_T0061249.1 MGP_AJ_G0027269.1 mouse_genomes_project 3 72703968 72763101 + MGP_AJ_P0061249 Serpini1 protein_coding protein_coding MGP_AJ_T0061250.1 MGP_AJ_G0027269.1 mouse_genomes_project 3 72703982 72758120 + Serpini1 protein_coding processed_transcript MGP_AJ_T0061251.1 MGP_AJ_G0027269.1 mouse_genomes_project 3 72703999 72762593 + Serpini1 protein_coding retained_intron MGP_AJ_T0004279.1 MGP_AJ_G0003757.1 mouse_genomes_project 3 86584264 86594245 + 4731419I09Rik antisense antisense MGP_AJ_T0014188.1 MGP_AJ_G0012283.1 mouse_genomes_project 3 93155196 93155928 - processed_pseudogene processed_pseudogene MGP_AJ_T0060340.1 MGP_AJ_G0027083.1 mouse_genomes_project 3 27749682 27774943 - MGP_AJ_P0060340 Lrrc34 protein_coding protein_coding MGP_AJ_T0060147.1 MGP_AJ_G0027048.1 mouse_genomes_project 3 15149942 15153286 + MGP_AJ_P0060147 Bhlhe22 protein_coding protein_coding MGP_AJ_T0064023.1 MGP_AJ_G0027882.1 mouse_genomes_project 3 136191994 136209923 + MGP_AJ_P0064023 Trmt10a protein_coding protein_coding MGP_AJ_T0064024.1 MGP_AJ_G0027882.1 mouse_genomes_project 3 136192015 136204383 + Trmt10a protein_coding retained_intron MGP_AJ_T0064025.1 MGP_AJ_G0027882.1 mouse_genomes_project 3 136192063 136209920 + MGP_AJ_P0064025 Trmt10a protein_coding protein_coding MGP_AJ_T0064026.1 MGP_AJ_G0027882.1 mouse_genomes_project 3 136192345 136196920 + MGP_AJ_P0064026 Trmt10a protein_coding protein_coding MGP_AJ_T0064027.1 MGP_AJ_G0027882.1 mouse_genomes_project 3 136192407 136197022 + MGP_AJ_P0064027 Trmt10a protein_coding protein_coding MGP_AJ_T0064028.1 MGP_AJ_G0027882.1 mouse_genomes_project 3 136192419 136205436 + MGP_AJ_P0064028 Trmt10a protein_coding unknown_likely_coding MGP_AJ_T0064029.1 MGP_AJ_G0027882.1 mouse_genomes_project 3 136192456 136199041 + MGP_AJ_P0064029 Trmt10a protein_coding protein_coding MGP_AJ_T0102557.1 MGP_AJ_G0040299.1 mouse_genomes_project 3 91621441 91621846 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0001298.1 MGP_AJ_G0001222.1 mouse_genomes_project 3 116609012 116612525 + TEC TEC MGP_AJ_T0099006.1 MGP_AJ_G0036983.1 mouse_genomes_project 3 102899709 102900640 - Gm43846 sense_intronic sense_intronic MGP_AJ_T0102524.1 MGP_AJ_G0040266.1 mouse_genomes_project 3 11478407 11493085 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0014384.1 MGP_AJ_G0012479.1 mouse_genomes_project 3 156136723 156137133 - processed_pseudogene processed_pseudogene MGP_AJ_T0017926.1 MGP_AJ_G0015476.1 mouse_genomes_project 3 31264425 31267120 + processed_transcript retained_intron MGP_AJ_T0017927.1 MGP_AJ_G0015476.1 mouse_genomes_project 3 31264593 31788805 + processed_transcript sense_overlapping MGP_AJ_T0017928.1 MGP_AJ_G0015476.1 mouse_genomes_project 3 31264613 31826456 + processed_transcript sense_overlapping MGP_AJ_T0017929.1 MGP_AJ_G0015476.1 mouse_genomes_project 3 31353659 31788880 + processed_transcript sense_overlapping MGP_AJ_T0017930.1 MGP_AJ_G0015476.1 mouse_genomes_project 3 31353772 31664408 + processed_transcript sense_overlapping MGP_AJ_T0017931.1 MGP_AJ_G0015476.1 mouse_genomes_project 3 31708277 31826280 + processed_transcript sense_overlapping MGP_AJ_T0017932.1 MGP_AJ_G0015476.1 mouse_genomes_project 3 31708330 31828423 + processed_transcript sense_overlapping MGP_AJ_T0017933.1 MGP_AJ_G0015476.1 mouse_genomes_project 3 31708337 31721804 + processed_transcript sense_overlapping MGP_AJ_T0017934.1 MGP_AJ_G0015476.1 mouse_genomes_project 3 31708341 31788843 + processed_transcript sense_overlapping MGP_AJ_T0017935.1 MGP_AJ_G0015476.1 mouse_genomes_project 3 31708665 31708732 + processed_transcript misc_RNA MGP_AJ_T0017936.1 MGP_AJ_G0015476.1 mouse_genomes_project 3 31737605 31826420 + processed_transcript sense_overlapping MGP_AJ_T0017937.1 MGP_AJ_G0015476.1 mouse_genomes_project 3 31787563 31828423 + processed_transcript sense_overlapping MGP_AJ_T0017938.1 MGP_AJ_G0015476.1 mouse_genomes_project 3 31788570 31826323 + processed_transcript sense_overlapping MGP_AJ_T0017939.1 MGP_AJ_G0015476.1 mouse_genomes_project 3 31788648 31831292 + processed_transcript sense_overlapping MGP_AJ_T0017940.1 MGP_AJ_G0015476.1 mouse_genomes_project 3 31788693 31831255 + processed_transcript sense_overlapping MGP_AJ_T0017941.1 MGP_AJ_G0015476.1 mouse_genomes_project 3 31788900 31832952 + processed_transcript sense_overlapping MGP_AJ_T0017942.1 MGP_AJ_G0015476.1 mouse_genomes_project 3 31806469 31826576 + processed_transcript sense_overlapping MGP_AJ_T0017943.1 MGP_AJ_G0015476.1 mouse_genomes_project 3 31815668 31828425 + processed_transcript sense_overlapping MGP_AJ_T0004204.1 MGP_AJ_G0003702.1 mouse_genomes_project 3 23491245 23492475 + A830092H15Rik antisense antisense MGP_AJ_T0004205.1 MGP_AJ_G0003702.1 mouse_genomes_project 3 23492047 23493478 + A830092H15Rik antisense antisense MGP_AJ_T0060026.1 MGP_AJ_G0027009.1 mouse_genomes_project 3 2355732 2552235 + MGP_AJ_P0060026 Zfhx4 protein_coding protein_coding MGP_AJ_T0060027.1 MGP_AJ_G0027009.1 mouse_genomes_project 3 2355752 2469894 + Zfhx4 protein_coding retained_intron MGP_AJ_T0060028.1 MGP_AJ_G0027009.1 mouse_genomes_project 3 2355760 2554924 + MGP_AJ_P0060028 Zfhx4 protein_coding protein_coding MGP_AJ_T0060029.1 MGP_AJ_G0027009.1 mouse_genomes_project 3 2358478 2378994 + MGP_AJ_P0060029 Zfhx4 protein_coding protein_coding MGP_AJ_T0060030.1 MGP_AJ_G0027009.1 mouse_genomes_project 3 2378647 2554926 + MGP_AJ_P0060030 Zfhx4 protein_coding protein_coding MGP_AJ_T0014191.1 MGP_AJ_G0012286.1 mouse_genomes_project 3 93374286 93375038 + processed_pseudogene processed_pseudogene MGP_AJ_T0099832.1 MGP_AJ_G0037798.1 mouse_genomes_project 3 60933938 60934036 + Gm23500 snRNA snRNA MGP_AJ_T0014173.1 MGP_AJ_G0012268.1 mouse_genomes_project 3 89997721 89998025 - processed_pseudogene processed_pseudogene MGP_AJ_T0099873.1 MGP_AJ_G0037839.1 mouse_genomes_project 3 121494177 121494307 - Gm22713 snRNA snRNA MGP_AJ_T0063632.1 MGP_AJ_G0027813.1 mouse_genomes_project 3 122588617 122611191 - MGP_AJ_P0063632 1700003H04Rik protein_coding protein_coding MGP_AJ_T0063633.1 MGP_AJ_G0027813.1 mouse_genomes_project 3 122588617 122611191 - MGP_AJ_P0063633 1700003H04Rik protein_coding protein_coding MGP_AJ_T0063634.1 MGP_AJ_G0027813.1 mouse_genomes_project 3 122598270 122611192 - MGP_AJ_P0063634 1700003H04Rik protein_coding protein_coding MGP_AJ_T0063635.1 MGP_AJ_G0027813.1 mouse_genomes_project 3 122602954 122611201 - MGP_AJ_P0063635 1700003H04Rik protein_coding nonsense_mediated_decay MGP_AJ_T0063636.1 MGP_AJ_G0027813.1 mouse_genomes_project 3 122602955 122608618 - MGP_AJ_P0063636 1700003H04Rik protein_coding protein_coding MGP_AJ_T0063637.1 MGP_AJ_G0027813.1 mouse_genomes_project 3 122602955 122611194 - MGP_AJ_P0063637 1700003H04Rik protein_coding nonsense_mediated_decay MGP_AJ_T0013972.1 MGP_AJ_G0012067.1 mouse_genomes_project 3 25377542 25377786 + processed_pseudogene processed_pseudogene MGP_AJ_T0001120.1 MGP_AJ_G0001046.1 mouse_genomes_project 3 17549049 17549295 + TEC TEC MGP_AJ_T0060097.1 MGP_AJ_G0027031.1 mouse_genomes_project 3 7463288 7467211 - MGP_AJ_P0060097 Slc10a5 protein_coding protein_coding MGP_AJ_T0001178.1 MGP_AJ_G0001104.1 mouse_genomes_project 3 47631978 47633279 - TEC TEC MGP_AJ_T0013927.1 MGP_AJ_G0012022.1 mouse_genomes_project 3 10085694 10086037 + processed_pseudogene processed_pseudogene MGP_AJ_T0001157.1 MGP_AJ_G0001083.1 mouse_genomes_project 3 34985445 34986558 + TEC TEC MGP_AJ_T0098991.1 MGP_AJ_G0036968.1 mouse_genomes_project 3 102064896 102066780 - Gm42699 sense_intronic sense_intronic MGP_AJ_T0014003.1 MGP_AJ_G0012098.1 mouse_genomes_project 3 35104825 35105301 - processed_pseudogene processed_pseudogene MGP_AJ_T0007717.1 MGP_AJ_G0006308.1 mouse_genomes_project 3 131783804 131785794 - Gm6135 lincRNA lincRNA MGP_AJ_T0004227.1 MGP_AJ_G0003716.1 mouse_genomes_project 3 33346593 33348928 + Gm43255 antisense antisense MGP_AJ_T0063186.1 MGP_AJ_G0027723.1 mouse_genomes_project 3 106097666 106101934 - MGP_AJ_P0063186 Gstm4 protein_coding protein_coding MGP_AJ_T0063822.1 MGP_AJ_G0027842.1 mouse_genomes_project 3 128994546 128996076 - MGP_AJ_P0063822 protein_coding protein_coding MGP_AJ_T0014327.1 MGP_AJ_G0012422.1 mouse_genomes_project 3 133145215 133145804 + processed_pseudogene processed_pseudogene MGP_AJ_T0011542.1 MGP_AJ_G0009664.1 mouse_genomes_project 3 75947678 75948021 + Gm24749 misc_RNA misc_RNA MGP_AJ_T0007738.1 MGP_AJ_G0006326.1 mouse_genomes_project 3 138976493 138977865 + 4930590L14Rik lincRNA lincRNA MGP_AJ_T0101104.1 MGP_AJ_G0039070.1 mouse_genomes_project 3 5767416 5767535 - Gm23670 snoRNA snoRNA MGP_AJ_T0011539.1 MGP_AJ_G0009661.1 mouse_genomes_project 3 56062746 56062822 + Gm27793 misc_RNA misc_RNA MGP_AJ_T0061880.1 MGP_AJ_G0027395.1 mouse_genomes_project 3 86579803 86584443 - MGP_AJ_P0061880 Efna4 protein_coding protein_coding MGP_AJ_T0062980.1 MGP_AJ_G0027668.1 mouse_genomes_project 3 102709300 102719475 - MGP_AJ_P0062980 Fam19a3 protein_coding protein_coding MGP_AJ_T0062981.1 MGP_AJ_G0027668.1 mouse_genomes_project 3 102719288 102723770 - Fam19a3 protein_coding processed_transcript MGP_AJ_T0001118.1 MGP_AJ_G0001044.1 mouse_genomes_project 3 15740944 15744892 + TEC TEC MGP_AJ_T0001398.1 MGP_AJ_G0001321.1 mouse_genomes_project 3 156228429 156231895 + TEC TEC MGP_AJ_T0099814.1 MGP_AJ_G0037780.1 mouse_genomes_project 3 32853539 32853644 + Gm25696 snRNA snRNA MGP_AJ_T0060961.1 MGP_AJ_G0027196.1 mouse_genomes_project 3 55583633 55615461 + MGP_AJ_P0060961 Eif2a protein_coding protein_coding MGP_AJ_T0060962.1 MGP_AJ_G0027196.1 mouse_genomes_project 3 55583854 55603921 + Eif2a protein_coding retained_intron MGP_AJ_T0060963.1 MGP_AJ_G0027196.1 mouse_genomes_project 3 55583855 55613604 + MGP_AJ_P0060963 Eif2a protein_coding nonsense_mediated_decay MGP_AJ_T0060964.1 MGP_AJ_G0027196.1 mouse_genomes_project 3 55583868 55615461 + MGP_AJ_P0060964 Eif2a protein_coding nonsense_mediated_decay MGP_AJ_T0060965.1 MGP_AJ_G0027196.1 mouse_genomes_project 3 55584115 55603710 + MGP_AJ_P0060965 Eif2a protein_coding protein_coding MGP_AJ_T0060966.1 MGP_AJ_G0027196.1 mouse_genomes_project 3 55601099 55603921 + Eif2a protein_coding retained_intron MGP_AJ_T0060967.1 MGP_AJ_G0027196.1 mouse_genomes_project 3 55602331 55608714 + Eif2a protein_coding retained_intron MGP_AJ_T0101102.1 MGP_AJ_G0039068.1 mouse_genomes_project 3 4082941 4083054 + Gm22074 snoRNA snoRNA MGP_AJ_T0010497.1 MGP_AJ_G0008619.1 mouse_genomes_project 3 23773832 23773959 - Gm25773 miRNA miRNA MGP_AJ_T0014329.1 MGP_AJ_G0012424.1 mouse_genomes_project 3 133227875 133228300 + processed_pseudogene processed_pseudogene MGP_AJ_T0063042.1 MGP_AJ_G0027683.1 mouse_genomes_project 3 103873768 103885837 - MGP_AJ_P0063042 I830077J02Rik protein_coding protein_coding MGP_AJ_T0063043.1 MGP_AJ_G0027683.1 mouse_genomes_project 3 103875817 103877406 - MGP_AJ_P0063043 I830077J02Rik protein_coding nonsense_mediated_decay MGP_AJ_T0063044.1 MGP_AJ_G0027683.1 mouse_genomes_project 3 103877092 103885789 - I830077J02Rik protein_coding retained_intron MGP_AJ_T0007786.1 MGP_AJ_G0006363.1 mouse_genomes_project 3 151363909 151384130 - Gm43832 lincRNA lincRNA MGP_AJ_T0007787.1 MGP_AJ_G0006363.1 mouse_genomes_project 3 151367419 151376737 - Gm43832 lincRNA lincRNA MGP_AJ_T0101179.1 MGP_AJ_G0039145.1 mouse_genomes_project 3 155455466 155455598 + Gm24373 snoRNA snoRNA MGP_AJ_T0001381.1 MGP_AJ_G0001304.1 mouse_genomes_project 3 150572309 150573746 - TEC TEC MGP_AJ_T0001224.1 MGP_AJ_G0001148.1 mouse_genomes_project 3 54703710 54704884 - TEC TEC MGP_AJ_T0062836.1 MGP_AJ_G0027643.1 mouse_genomes_project 3 100704800 100709316 - Tshb protein_coding retained_intron MGP_AJ_T0062837.1 MGP_AJ_G0027643.1 mouse_genomes_project 3 100706733 100711810 - MGP_AJ_P0062837 Tshb protein_coding protein_coding MGP_AJ_T0062838.1 MGP_AJ_G0027643.1 mouse_genomes_project 3 100706733 100711770 - MGP_AJ_P0062838 Tshb protein_coding protein_coding MGP_AJ_T0062839.1 MGP_AJ_G0027643.1 mouse_genomes_project 3 100706742 100711814 - MGP_AJ_P0062839 Tshb protein_coding protein_coding MGP_AJ_T0062840.1 MGP_AJ_G0027643.1 mouse_genomes_project 3 100706754 100711770 - MGP_AJ_P0062840 Tshb protein_coding protein_coding MGP_AJ_T0062841.1 MGP_AJ_G0027643.1 mouse_genomes_project 3 100706781 100711579 - MGP_AJ_P0062841 Tshb protein_coding protein_coding MGP_AJ_T0007574.1 MGP_AJ_G0006198.1 mouse_genomes_project 3 67947263 67987159 - Gm6634 lincRNA lincRNA MGP_AJ_T0063379.1 MGP_AJ_G0027763.1 mouse_genomes_project 3 113949166 113953053 - Slc30a7 protein_coding processed_transcript MGP_AJ_T0063380.1 MGP_AJ_G0027763.1 mouse_genomes_project 3 113949166 114020035 - MGP_AJ_P0063380 Slc30a7 protein_coding protein_coding MGP_AJ_T0063381.1 MGP_AJ_G0027763.1 mouse_genomes_project 3 113994641 114002674 - Slc30a7 protein_coding processed_transcript MGP_AJ_T0063382.1 MGP_AJ_G0027763.1 mouse_genomes_project 3 114001675 114003940 - Slc30a7 protein_coding retained_intron MGP_AJ_T0063805.1 MGP_AJ_G0027839.1 mouse_genomes_project 3 128690723 128708086 + MGP_AJ_P0063805 Etnppl protein_coding protein_coding MGP_AJ_T0063806.1 MGP_AJ_G0027839.1 mouse_genomes_project 3 128690844 128710798 + MGP_AJ_P0063806 Etnppl protein_coding protein_coding MGP_AJ_T0063807.1 MGP_AJ_G0027839.1 mouse_genomes_project 3 128690847 128694905 + Etnppl protein_coding retained_intron MGP_AJ_T0063808.1 MGP_AJ_G0027839.1 mouse_genomes_project 3 128690874 128694927 + Etnppl protein_coding retained_intron MGP_AJ_T0063809.1 MGP_AJ_G0027839.1 mouse_genomes_project 3 128690968 128707954 + MGP_AJ_P0063809 Etnppl protein_coding protein_coding MGP_AJ_T0063810.1 MGP_AJ_G0027839.1 mouse_genomes_project 3 128699796 128703001 + MGP_AJ_P0063810 Etnppl protein_coding protein_coding MGP_AJ_T0010538.1 MGP_AJ_G0008660.1 mouse_genomes_project 3 97068480 97068590 - Mir6481 miRNA miRNA MGP_AJ_T0099813.1 MGP_AJ_G0037779.1 mouse_genomes_project 3 30213475 30213633 + Gm23214 snRNA snRNA MGP_AJ_T0061881.1 MGP_AJ_G0027396.1 mouse_genomes_project 3 86584956 86596396 - MGP_AJ_P0061881 Adam15 protein_coding nonsense_mediated_decay MGP_AJ_T0061882.1 MGP_AJ_G0027396.1 mouse_genomes_project 3 86586054 86596403 - MGP_AJ_P0061882 Adam15 protein_coding protein_coding MGP_AJ_T0061883.1 MGP_AJ_G0027396.1 mouse_genomes_project 3 86586054 86596410 - MGP_AJ_P0061883 Adam15 protein_coding protein_coding MGP_AJ_T0061884.1 MGP_AJ_G0027396.1 mouse_genomes_project 3 86586055 86587572 - Adam15 protein_coding processed_transcript MGP_AJ_T0061885.1 MGP_AJ_G0027396.1 mouse_genomes_project 3 86586058 86586855 - Adam15 protein_coding processed_transcript MGP_AJ_T0061886.1 MGP_AJ_G0027396.1 mouse_genomes_project 3 86586058 86596373 - MGP_AJ_P0061886 Adam15 protein_coding protein_coding MGP_AJ_T0061887.1 MGP_AJ_G0027396.1 mouse_genomes_project 3 86586062 86596389 - MGP_AJ_P0061887 Adam15 protein_coding protein_coding MGP_AJ_T0061888.1 MGP_AJ_G0027396.1 mouse_genomes_project 3 86586159 86586767 - Adam15 protein_coding retained_intron MGP_AJ_T0061889.1 MGP_AJ_G0027396.1 mouse_genomes_project 3 86586329 86587334 - Adam15 protein_coding retained_intron MGP_AJ_T0061890.1 MGP_AJ_G0027396.1 mouse_genomes_project 3 86586488 86590094 - Adam15 protein_coding retained_intron MGP_AJ_T0061891.1 MGP_AJ_G0027396.1 mouse_genomes_project 3 86589146 86596388 - Adam15 protein_coding retained_intron MGP_AJ_T0061892.1 MGP_AJ_G0027396.1 mouse_genomes_project 3 86592941 86596374 - Adam15 protein_coding retained_intron MGP_AJ_T0061893.1 MGP_AJ_G0027396.1 mouse_genomes_project 3 86594931 86595521 - Adam15 protein_coding processed_transcript MGP_AJ_T0064065.1 MGP_AJ_G0027891.1 mouse_genomes_project 3 136787809 136954593 + MGP_AJ_P0064065 Tspan5 protein_coding protein_coding MGP_AJ_T0064066.1 MGP_AJ_G0027891.1 mouse_genomes_project 3 136787919 136951244 + MGP_AJ_P0064066 Tspan5 protein_coding nonsense_mediated_decay MGP_AJ_T0064067.1 MGP_AJ_G0027891.1 mouse_genomes_project 3 136788119 136943699 + MGP_AJ_P0064067 Tspan5 protein_coding nonsense_mediated_decay MGP_AJ_T0064068.1 MGP_AJ_G0027891.1 mouse_genomes_project 3 136788383 136941322 + MGP_AJ_P0064068 Tspan5 protein_coding protein_coding MGP_AJ_T0064069.1 MGP_AJ_G0027891.1 mouse_genomes_project 3 136824290 136949312 + MGP_AJ_P0064069 Tspan5 protein_coding nonsense_mediated_decay MGP_AJ_T0064070.1 MGP_AJ_G0027891.1 mouse_genomes_project 3 136887224 136951235 + MGP_AJ_P0064070 Tspan5 protein_coding protein_coding MGP_AJ_T0098666.1 MGP_AJ_G0036650.1 mouse_genomes_project 3 22655898 22656033 + Gm24250 rRNA rRNA MGP_AJ_T0063320.1 MGP_AJ_G0027751.1 mouse_genomes_project 3 107047845 107107018 - MGP_AJ_P0063320 Fam102b protein_coding protein_coding MGP_AJ_T0014383.1 MGP_AJ_G0012478.1 mouse_genomes_project 3 155668679 155669449 + processed_pseudogene processed_pseudogene MGP_AJ_T0004271.1 MGP_AJ_G0003751.1 mouse_genomes_project 3 85318417 85324846 - 1700113A16Rik antisense antisense MGP_AJ_T0004272.1 MGP_AJ_G0003751.1 mouse_genomes_project 3 85318417 85324753 - 1700113A16Rik antisense antisense MGP_AJ_T0004273.1 MGP_AJ_G0003751.1 mouse_genomes_project 3 85318870 85324767 - 1700113A16Rik antisense antisense MGP_AJ_T0014239.1 MGP_AJ_G0012334.1 mouse_genomes_project 3 105832774 105833390 + processed_pseudogene processed_pseudogene MGP_AJ_T0063836.1 MGP_AJ_G0027846.1 mouse_genomes_project 3 129390374 129416171 - MGP_AJ_P0063836 Sgms2 protein_coding protein_coding MGP_AJ_T0063837.1 MGP_AJ_G0027846.1 mouse_genomes_project 3 129413347 129416178 - MGP_AJ_P0063837 Sgms2 protein_coding protein_coding MGP_AJ_T0063838.1 MGP_AJ_G0027846.1 mouse_genomes_project 3 129413406 129476413 - MGP_AJ_P0063838 Sgms2 protein_coding protein_coding MGP_AJ_T0063839.1 MGP_AJ_G0027846.1 mouse_genomes_project 3 129413471 129477345 - Sgms2 protein_coding processed_transcript MGP_AJ_T0014176.1 MGP_AJ_G0012271.1 mouse_genomes_project 3 90689758 90689891 - processed_pseudogene processed_pseudogene MGP_AJ_T0007676.1 MGP_AJ_G0006276.1 mouse_genomes_project 3 114514478 114518891 + Gm26530 lincRNA lincRNA MGP_AJ_T0001107.1 MGP_AJ_G0001034.1 mouse_genomes_project 3 265498 265625 + TEC TEC MGP_AJ_T0099878.1 MGP_AJ_G0037844.1 mouse_genomes_project 3 130939783 130939890 + Gm23196 snRNA snRNA MGP_AJ_T0101129.1 MGP_AJ_G0039095.1 mouse_genomes_project 3 67415144 67415272 - Gm23477 snoRNA snoRNA MGP_AJ_T0063903.1 MGP_AJ_G0027860.1 mouse_genomes_project 3 133231499 133294200 + MGP_AJ_P0063903 Cenpe protein_coding protein_coding MGP_AJ_T0063904.1 MGP_AJ_G0027860.1 mouse_genomes_project 3 133261686 133266122 + MGP_AJ_P0063904 Cenpe protein_coding protein_coding MGP_AJ_T0063905.1 MGP_AJ_G0027860.1 mouse_genomes_project 3 133279656 133280096 + Cenpe protein_coding retained_intron MGP_AJ_T0063906.1 MGP_AJ_G0027860.1 mouse_genomes_project 3 133280459 133286593 + Cenpe protein_coding retained_intron MGP_AJ_T0063907.1 MGP_AJ_G0027860.1 mouse_genomes_project 3 133291145 133291677 + Cenpe protein_coding retained_intron MGP_AJ_T0001248.1 MGP_AJ_G0001172.1 mouse_genomes_project 3 74729981 74736368 - TEC TEC MGP_AJ_T0014264.1 MGP_AJ_G0012359.1 mouse_genomes_project 3 111688429 111689036 - processed_pseudogene processed_pseudogene MGP_AJ_T0062595.1 MGP_AJ_G0027579.1 mouse_genomes_project 3 94212989 94221390 - MGP_AJ_P0062595 BC107364 protein_coding protein_coding MGP_AJ_T0062596.1 MGP_AJ_G0027579.1 mouse_genomes_project 3 94212989 94221390 - MGP_AJ_P0062596 BC107364 protein_coding protein_coding MGP_AJ_T0014244.1 MGP_AJ_G0012339.1 mouse_genomes_project 3 106072998 106073442 + processed_pseudogene processed_pseudogene MGP_AJ_T0062081.1 MGP_AJ_G0027428.1 mouse_genomes_project 3 87740518 87756084 - MGP_AJ_P0062081 Npr1 protein_coding protein_coding MGP_AJ_T0062082.1 MGP_AJ_G0027428.1 mouse_genomes_project 3 87740637 87741768 - Npr1 protein_coding retained_intron MGP_AJ_T0062083.1 MGP_AJ_G0027428.1 mouse_genomes_project 3 87745192 87747693 - Npr1 protein_coding processed_transcript MGP_AJ_T0062084.1 MGP_AJ_G0027428.1 mouse_genomes_project 3 87747615 87749156 - Npr1 protein_coding retained_intron MGP_AJ_T0062085.1 MGP_AJ_G0027428.1 mouse_genomes_project 3 87747634 87751638 - MGP_AJ_P0062085 Npr1 protein_coding nonsense_mediated_decay MGP_AJ_T0001191.1 MGP_AJ_G0001117.1 mouse_genomes_project 3 48598997 48599539 + TEC TEC MGP_AJ_T0004217.1 MGP_AJ_G0003710.1 mouse_genomes_project 3 29798842 29801481 + Gm37640 antisense antisense MGP_AJ_T0061625.1 MGP_AJ_G0027356.1 mouse_genomes_project 3 85521326 85526099 + MGP_AJ_P0061625 Paqr6 protein_coding unknown_likely_coding MGP_AJ_T0061626.1 MGP_AJ_G0027356.1 mouse_genomes_project 3 85521374 85528158 + MGP_AJ_P0061626 Paqr6 protein_coding protein_coding MGP_AJ_T0061627.1 MGP_AJ_G0027356.1 mouse_genomes_project 3 85521379 85551900 + MGP_AJ_P0061627 Paqr6 protein_coding protein_coding MGP_AJ_T0061628.1 MGP_AJ_G0027356.1 mouse_genomes_project 3 85521381 85524034 + Paqr6 protein_coding processed_transcript MGP_AJ_T0061629.1 MGP_AJ_G0027356.1 mouse_genomes_project 3 85521383 85522593 + Paqr6 protein_coding retained_intron MGP_AJ_T0061630.1 MGP_AJ_G0027356.1 mouse_genomes_project 3 85523512 85551900 + Paqr6 protein_coding retained_intron MGP_AJ_T0013901.1 MGP_AJ_G0011996.1 mouse_genomes_project 3 3411468 3411586 - processed_pseudogene processed_pseudogene MGP_AJ_T0001346.1 MGP_AJ_G0001269.1 mouse_genomes_project 3 128612771 128618912 + TEC TEC MGP_AJ_T0061572.1 MGP_AJ_G0027346.1 mouse_genomes_project 3 85212121 85220888 - MGP_AJ_P0061572 Ttc24 protein_coding protein_coding MGP_AJ_T0061573.1 MGP_AJ_G0027346.1 mouse_genomes_project 3 85212524 85214784 - MGP_AJ_P0061573 Ttc24 protein_coding protein_coding MGP_AJ_T0061083.1 MGP_AJ_G0027226.1 mouse_genomes_project 3 61261330 61285754 + MGP_AJ_P0061083 Vmn2r1 protein_coding protein_coding MGP_AJ_T0060149.1 MGP_AJ_G0027050.1 mouse_genomes_project 3 16255365 16291801 - MGP_AJ_P0060149 Armc1 protein_coding protein_coding MGP_AJ_T0061931.1 MGP_AJ_G0027405.1 mouse_genomes_project 3 86685651 86700212 + MGP_AJ_P0061931 Pbxip1 protein_coding protein_coding MGP_AJ_T0061932.1 MGP_AJ_G0027405.1 mouse_genomes_project 3 86685657 86694743 + Pbxip1 protein_coding processed_transcript MGP_AJ_T0061933.1 MGP_AJ_G0027405.1 mouse_genomes_project 3 86685660 86695382 + MGP_AJ_P0061933 Pbxip1 protein_coding protein_coding MGP_AJ_T0061934.1 MGP_AJ_G0027405.1 mouse_genomes_project 3 86685699 86694691 + MGP_AJ_P0061934 Pbxip1 protein_coding protein_coding MGP_AJ_T0061935.1 MGP_AJ_G0027405.1 mouse_genomes_project 3 86685701 86694735 + MGP_AJ_P0061935 Pbxip1 protein_coding protein_coding MGP_AJ_T0101135.1 MGP_AJ_G0039101.1 mouse_genomes_project 3 83221150 83221272 + Gm25188 snoRNA snoRNA MGP_AJ_T0010535.1 MGP_AJ_G0008657.1 mouse_genomes_project 3 93487983 93488046 - Mir7014 miRNA miRNA MGP_AJ_T0001345.1 MGP_AJ_G0001268.1 mouse_genomes_project 3 127611960 127613631 + TEC TEC MGP_AJ_T0014158.1 MGP_AJ_G0012253.1 mouse_genomes_project 3 84171241 84171550 + processed_pseudogene processed_pseudogene MGP_AJ_T0064239.1 MGP_AJ_G0027928.1 mouse_genomes_project 3 144355217 144420438 + MGP_AJ_P0064239 Lpar3 protein_coding protein_coding MGP_AJ_T0007791.1 MGP_AJ_G0006367.1 mouse_genomes_project 3 154794602 154810199 - 4930570G19Rik lincRNA lincRNA MGP_AJ_T0007792.1 MGP_AJ_G0006367.1 mouse_genomes_project 3 154794610 154810094 - 4930570G19Rik lincRNA lincRNA MGP_AJ_T0007793.1 MGP_AJ_G0006367.1 mouse_genomes_project 3 154796264 154810187 - 4930570G19Rik lincRNA lincRNA MGP_AJ_T0007794.1 MGP_AJ_G0006367.1 mouse_genomes_project 3 154807687 154810258 - 4930570G19Rik lincRNA lincRNA MGP_AJ_T0098669.1 MGP_AJ_G0036653.1 mouse_genomes_project 3 48848373 48848490 + n-R5s196 rRNA rRNA MGP_AJ_T0062130.1 MGP_AJ_G0027440.1 mouse_genomes_project 3 87905107 87908421 + MGP_AJ_P0062130 S100a5 protein_coding protein_coding MGP_AJ_T0062131.1 MGP_AJ_G0027440.1 mouse_genomes_project 3 87906450 87908421 + MGP_AJ_P0062131 S100a5 protein_coding protein_coding MGP_AJ_T0013948.1 MGP_AJ_G0012043.1 mouse_genomes_project 3 15688220 15689420 + processed_pseudogene processed_pseudogene MGP_AJ_T0014371.1 MGP_AJ_G0012466.1 mouse_genomes_project 3 147340175 147340634 + processed_pseudogene processed_pseudogene MGP_AJ_T0101796.1 MGP_AJ_G0039706.1 mouse_genomes_project 3 122320681 122321111 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0101174.1 MGP_AJ_G0039140.1 mouse_genomes_project 3 152047115 152047238 + Gm25757 snoRNA snoRNA MGP_AJ_T0061981.1 MGP_AJ_G0027415.1 mouse_genomes_project 3 87268520 87321400 - MGP_AJ_P0061981 Ubap2l protein_coding protein_coding MGP_AJ_T0061982.1 MGP_AJ_G0027415.1 mouse_genomes_project 3 87268520 87321390 - MGP_AJ_P0061982 Ubap2l protein_coding protein_coding MGP_AJ_T0061983.1 MGP_AJ_G0027415.1 mouse_genomes_project 3 87268668 87321410 - MGP_AJ_P0061983 Ubap2l protein_coding protein_coding MGP_AJ_T0061984.1 MGP_AJ_G0027415.1 mouse_genomes_project 3 87268673 87321397 - MGP_AJ_P0061984 Ubap2l protein_coding protein_coding MGP_AJ_T0061985.1 MGP_AJ_G0027415.1 mouse_genomes_project 3 87269193 87271670 - MGP_AJ_P0061985 Ubap2l protein_coding protein_coding MGP_AJ_T0061986.1 MGP_AJ_G0027415.1 mouse_genomes_project 3 87270779 87272167 - Ubap2l protein_coding retained_intron MGP_AJ_T0061987.1 MGP_AJ_G0027415.1 mouse_genomes_project 3 87274374 87321387 - MGP_AJ_P0061987 Ubap2l protein_coding protein_coding MGP_AJ_T0061988.1 MGP_AJ_G0027415.1 mouse_genomes_project 3 87274599 87289866 - MGP_AJ_P0061988 Ubap2l protein_coding protein_coding MGP_AJ_T0061989.1 MGP_AJ_G0027415.1 mouse_genomes_project 3 87274600 87321450 - MGP_AJ_P0061989 Ubap2l protein_coding protein_coding MGP_AJ_T0061990.1 MGP_AJ_G0027415.1 mouse_genomes_project 3 87274600 87321407 - MGP_AJ_P0061990 Ubap2l protein_coding protein_coding MGP_AJ_T0061991.1 MGP_AJ_G0027415.1 mouse_genomes_project 3 87282683 87284782 - Ubap2l protein_coding retained_intron MGP_AJ_T0061992.1 MGP_AJ_G0027415.1 mouse_genomes_project 3 87282856 87289163 - Ubap2l protein_coding retained_intron MGP_AJ_T0061993.1 MGP_AJ_G0027415.1 mouse_genomes_project 3 87283506 87321266 - Ubap2l protein_coding retained_intron MGP_AJ_T0061994.1 MGP_AJ_G0027415.1 mouse_genomes_project 3 87284628 87286202 - Ubap2l protein_coding retained_intron MGP_AJ_T0061995.1 MGP_AJ_G0027415.1 mouse_genomes_project 3 87285040 87287070 - Ubap2l protein_coding retained_intron MGP_AJ_T0061996.1 MGP_AJ_G0027415.1 mouse_genomes_project 3 87288819 87296050 - Ubap2l protein_coding retained_intron MGP_AJ_T0061997.1 MGP_AJ_G0027415.1 mouse_genomes_project 3 87290605 87292042 - Ubap2l protein_coding retained_intron MGP_AJ_T0061998.1 MGP_AJ_G0027415.1 mouse_genomes_project 3 87305174 87307570 - Ubap2l protein_coding retained_intron MGP_AJ_T0061999.1 MGP_AJ_G0027415.1 mouse_genomes_project 3 87307693 87321017 - MGP_AJ_P0061999 Ubap2l protein_coding protein_coding MGP_AJ_T0062000.1 MGP_AJ_G0027415.1 mouse_genomes_project 3 87310509 87321437 - Ubap2l protein_coding retained_intron MGP_AJ_T0062001.1 MGP_AJ_G0027415.1 mouse_genomes_project 3 87312510 87321563 - MGP_AJ_P0062001 Ubap2l protein_coding protein_coding MGP_AJ_T0062002.1 MGP_AJ_G0027415.1 mouse_genomes_project 3 87312580 87321373 - MGP_AJ_P0062002 Ubap2l protein_coding protein_coding MGP_AJ_T0062003.1 MGP_AJ_G0027415.1 mouse_genomes_project 3 87313644 87317116 - MGP_AJ_P0062003 Ubap2l protein_coding protein_coding MGP_AJ_T0061239.1 MGP_AJ_G0027267.1 mouse_genomes_project 3 72449874 72624313 - MGP_AJ_P0061239 Wdr49 protein_coding protein_coding MGP_AJ_T0061240.1 MGP_AJ_G0027267.1 mouse_genomes_project 3 72555135 72599348 - MGP_AJ_P0061240 Wdr49 protein_coding protein_coding MGP_AJ_T0061241.1 MGP_AJ_G0027267.1 mouse_genomes_project 3 72555135 72624314 - MGP_AJ_P0061241 Wdr49 protein_coding protein_coding MGP_AJ_T0061242.1 MGP_AJ_G0027267.1 mouse_genomes_project 3 72621964 72624729 - Wdr49 protein_coding retained_intron MGP_AJ_T0102537.1 MGP_AJ_G0040279.1 mouse_genomes_project 3 61859687 61861989 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0101176.1 MGP_AJ_G0039142.1 mouse_genomes_project 3 152128078 152128149 - Snord45b snoRNA snoRNA MGP_AJ_T0063648.1 MGP_AJ_G0027817.1 mouse_genomes_project 3 124625317 124717638 + Camk2d protein_coding processed_transcript MGP_AJ_T0063649.1 MGP_AJ_G0027817.1 mouse_genomes_project 3 124625966 124877758 + MGP_AJ_P0063649 Camk2d protein_coding protein_coding MGP_AJ_T0063650.1 MGP_AJ_G0027817.1 mouse_genomes_project 3 124625975 124877756 + MGP_AJ_P0063650 Camk2d protein_coding protein_coding MGP_AJ_T0063651.1 MGP_AJ_G0027817.1 mouse_genomes_project 3 124626013 124877762 + MGP_AJ_P0063651 Camk2d protein_coding protein_coding MGP_AJ_T0063652.1 MGP_AJ_G0027817.1 mouse_genomes_project 3 124626020 124851357 + MGP_AJ_P0063652 Camk2d protein_coding protein_coding MGP_AJ_T0063653.1 MGP_AJ_G0027817.1 mouse_genomes_project 3 124626022 124879171 + MGP_AJ_P0063653 Camk2d protein_coding protein_coding MGP_AJ_T0063654.1 MGP_AJ_G0027817.1 mouse_genomes_project 3 124626024 124801595 + Camk2d protein_coding retained_intron MGP_AJ_T0063655.1 MGP_AJ_G0027817.1 mouse_genomes_project 3 124626025 124873307 + Camk2d protein_coding retained_intron MGP_AJ_T0063656.1 MGP_AJ_G0027817.1 mouse_genomes_project 3 124626025 124844481 + MGP_AJ_P0063656 Camk2d protein_coding nonsense_mediated_decay MGP_AJ_T0063657.1 MGP_AJ_G0027817.1 mouse_genomes_project 3 124626035 124875560 + MGP_AJ_P0063657 Camk2d protein_coding nonsense_mediated_decay MGP_AJ_T0063658.1 MGP_AJ_G0027817.1 mouse_genomes_project 3 124626050 124876675 + Camk2d protein_coding processed_transcript MGP_AJ_T0063659.1 MGP_AJ_G0027817.1 mouse_genomes_project 3 124626112 124876548 + MGP_AJ_P0063659 Camk2d protein_coding protein_coding MGP_AJ_T0063660.1 MGP_AJ_G0027817.1 mouse_genomes_project 3 124626221 124879140 + MGP_AJ_P0063660 Camk2d protein_coding protein_coding MGP_AJ_T0063661.1 MGP_AJ_G0027817.1 mouse_genomes_project 3 124626323 124876067 + MGP_AJ_P0063661 Camk2d protein_coding protein_coding MGP_AJ_T0063662.1 MGP_AJ_G0027817.1 mouse_genomes_project 3 124626356 124718335 + Camk2d protein_coding retained_intron MGP_AJ_T0063663.1 MGP_AJ_G0027817.1 mouse_genomes_project 3 124626414 124876529 + Camk2d protein_coding retained_intron MGP_AJ_T0063664.1 MGP_AJ_G0027817.1 mouse_genomes_project 3 124626429 124877172 + MGP_AJ_P0063664 Camk2d protein_coding protein_coding MGP_AJ_T0063665.1 MGP_AJ_G0027817.1 mouse_genomes_project 3 124810612 124817532 + Camk2d protein_coding retained_intron MGP_AJ_T0063666.1 MGP_AJ_G0027817.1 mouse_genomes_project 3 124811188 124843253 + Camk2d protein_coding processed_transcript MGP_AJ_T0063667.1 MGP_AJ_G0027817.1 mouse_genomes_project 3 124816780 124841085 + Camk2d protein_coding retained_intron MGP_AJ_T0063668.1 MGP_AJ_G0027817.1 mouse_genomes_project 3 124827968 124873106 + Camk2d protein_coding retained_intron MGP_AJ_T0063669.1 MGP_AJ_G0027817.1 mouse_genomes_project 3 124830839 124876858 + Camk2d protein_coding retained_intron MGP_AJ_T0063670.1 MGP_AJ_G0027817.1 mouse_genomes_project 3 124834328 124874397 + Camk2d protein_coding retained_intron MGP_AJ_T0063671.1 MGP_AJ_G0027817.1 mouse_genomes_project 3 124834328 124874397 + Camk2d protein_coding retained_intron MGP_AJ_T0063672.1 MGP_AJ_G0027817.1 mouse_genomes_project 3 124835535 124876024 + MGP_AJ_P0063672 Camk2d protein_coding protein_coding MGP_AJ_T0063673.1 MGP_AJ_G0027817.1 mouse_genomes_project 3 124837120 124839494 + Camk2d protein_coding retained_intron MGP_AJ_T0063674.1 MGP_AJ_G0027817.1 mouse_genomes_project 3 124838456 124875743 + MGP_AJ_P0063674 Camk2d protein_coding protein_coding MGP_AJ_T0063675.1 MGP_AJ_G0027817.1 mouse_genomes_project 3 124839761 124842854 + Camk2d protein_coding retained_intron MGP_AJ_T0001230.1 MGP_AJ_G0001154.1 mouse_genomes_project 3 57732543 57736523 + TEC TEC MGP_AJ_T0007730.1 MGP_AJ_G0006320.1 mouse_genomes_project 3 135965104 135965548 - Gm43689 lincRNA lincRNA MGP_AJ_T0004216.1 MGP_AJ_G0003709.1 mouse_genomes_project 3 29697254 29697796 - Gm37592 antisense antisense MGP_AJ_T0061787.1 MGP_AJ_G0027382.1 mouse_genomes_project 3 86402766 86414907 + MGP_AJ_P0061787 Clk2 protein_coding protein_coding MGP_AJ_T0061788.1 MGP_AJ_G0027382.1 mouse_genomes_project 3 86402788 86405176 + MGP_AJ_P0061788 Clk2 protein_coding protein_coding MGP_AJ_T0061789.1 MGP_AJ_G0027382.1 mouse_genomes_project 3 86402789 86414907 + MGP_AJ_P0061789 Clk2 protein_coding protein_coding MGP_AJ_T0061790.1 MGP_AJ_G0027382.1 mouse_genomes_project 3 86402790 86414905 + Clk2 protein_coding retained_intron MGP_AJ_T0061791.1 MGP_AJ_G0027382.1 mouse_genomes_project 3 86402790 86411443 + MGP_AJ_P0061791 Clk2 protein_coding protein_coding MGP_AJ_T0061792.1 MGP_AJ_G0027382.1 mouse_genomes_project 3 86402811 86414907 + MGP_AJ_P0061792 Clk2 protein_coding protein_coding MGP_AJ_T0061793.1 MGP_AJ_G0027382.1 mouse_genomes_project 3 86402950 86414907 + MGP_AJ_P0061793 Clk2 protein_coding nonsense_mediated_decay MGP_AJ_T0061794.1 MGP_AJ_G0027382.1 mouse_genomes_project 3 86405135 86408374 + Clk2 protein_coding retained_intron MGP_AJ_T0061795.1 MGP_AJ_G0027382.1 mouse_genomes_project 3 86410150 86414066 + Clk2 protein_coding retained_intron MGP_AJ_T0061796.1 MGP_AJ_G0027382.1 mouse_genomes_project 3 86411940 86413733 + Clk2 protein_coding retained_intron MGP_AJ_T0061797.1 MGP_AJ_G0027382.1 mouse_genomes_project 3 86413020 86413957 + Clk2 protein_coding processed_transcript MGP_AJ_T0060091.1 MGP_AJ_G0027029.1 mouse_genomes_project 3 7443407 7462994 - MGP_AJ_P0060091 Impa1 protein_coding protein_coding MGP_AJ_T0060092.1 MGP_AJ_G0027029.1 mouse_genomes_project 3 7445405 7462994 - MGP_AJ_P0060092 Impa1 protein_coding protein_coding MGP_AJ_T0060093.1 MGP_AJ_G0027029.1 mouse_genomes_project 3 7446569 7448104 - Impa1 protein_coding retained_intron MGP_AJ_T0060094.1 MGP_AJ_G0027029.1 mouse_genomes_project 3 7446637 7463183 - MGP_AJ_P0060094 Impa1 protein_coding protein_coding MGP_AJ_T0060096.1 MGP_AJ_G0027029.1 mouse_genomes_project 3 7457696 7462687 - MGP_AJ_P0060096 Impa1 protein_coding protein_coding MGP_AJ_T0001244.1 MGP_AJ_G0001168.1 mouse_genomes_project 3 72765738 72769753 + TEC TEC MGP_AJ_T0013952.1 MGP_AJ_G0012047.1 mouse_genomes_project 3 16835661 16836712 - processed_pseudogene processed_pseudogene MGP_AJ_T0014362.1 MGP_AJ_G0012457.1 mouse_genomes_project 3 142791566 142792091 + processed_pseudogene processed_pseudogene MGP_AJ_T0007641.1 MGP_AJ_G0006247.1 mouse_genomes_project 3 96919888 96923934 + Gm12440 lincRNA lincRNA MGP_AJ_T0062590.1 MGP_AJ_G0027575.1 mouse_genomes_project 3 94034198 94034741 + MGP_AJ_P0062590 Hist1h3c protein_coding protein_coding MGP_AJ_T0007594.1 MGP_AJ_G0006214.1 mouse_genomes_project 3 79888077 79905077 - Gm43348 lincRNA lincRNA MGP_AJ_T0099822.1 MGP_AJ_G0037788.1 mouse_genomes_project 3 49757385 49757492 - Gm22798 snRNA snRNA MGP_AJ_T0060390.1 MGP_AJ_G0027095.1 mouse_genomes_project 3 29519249 29551856 - MGP_AJ_P0060390 Zmat3 protein_coding protein_coding MGP_AJ_T0060391.1 MGP_AJ_G0027095.1 mouse_genomes_project 3 29519253 29551798 - MGP_AJ_P0060391 Zmat3 protein_coding protein_coding MGP_AJ_T0060392.1 MGP_AJ_G0027095.1 mouse_genomes_project 3 29547242 29551638 - MGP_AJ_P0060392 Zmat3 protein_coding protein_coding MGP_AJ_T0060393.1 MGP_AJ_G0027095.1 mouse_genomes_project 3 29548364 29552198 - Zmat3 protein_coding retained_intron MGP_AJ_T0101105.1 MGP_AJ_G0039071.1 mouse_genomes_project 3 8125637 8125755 - Gm22795 snoRNA snoRNA MGP_AJ_T0060215.1 MGP_AJ_G0027062.1 mouse_genomes_project 3 17384507 17387204 - Cpb1 protein_coding retained_intron MGP_AJ_T0060216.1 MGP_AJ_G0027062.1 mouse_genomes_project 3 17384532 17410828 - MGP_AJ_P0060216 Cpb1 protein_coding protein_coding MGP_AJ_T0060217.1 MGP_AJ_G0027062.1 mouse_genomes_project 3 17399286 17401541 - Cpb1 protein_coding processed_transcript MGP_AJ_T0060125.1 MGP_AJ_G0027039.1 mouse_genomes_project 3 11721584 11726585 - MGP_AJ_P0060125 1810022K09Rik protein_coding protein_coding MGP_AJ_T0060126.1 MGP_AJ_G0027039.1 mouse_genomes_project 3 11721589 11726521 - MGP_AJ_P0060126 1810022K09Rik protein_coding protein_coding MGP_AJ_T0060127.1 MGP_AJ_G0027039.1 mouse_genomes_project 3 11721589 11726561 - MGP_AJ_P0060127 1810022K09Rik protein_coding protein_coding MGP_AJ_T0060128.1 MGP_AJ_G0027039.1 mouse_genomes_project 3 11721593 11726554 - MGP_AJ_P0060128 1810022K09Rik protein_coding protein_coding MGP_AJ_T0060129.1 MGP_AJ_G0027039.1 mouse_genomes_project 3 11724483 11726543 - 1810022K09Rik protein_coding retained_intron MGP_AJ_T0013988.1 MGP_AJ_G0012083.1 mouse_genomes_project 3 33101811 33102132 + processed_pseudogene processed_pseudogene MGP_AJ_T0099829.1 MGP_AJ_G0037795.1 mouse_genomes_project 3 56039894 56040066 - Gm25572 snRNA snRNA MGP_AJ_T0018002.1 MGP_AJ_G0015500.1 mouse_genomes_project 3 120859194 120900823 - 4930447N08Rik processed_transcript antisense MGP_AJ_T0018003.1 MGP_AJ_G0015500.1 mouse_genomes_project 3 120866779 120900922 - 4930447N08Rik processed_transcript retained_intron MGP_AJ_T0018004.1 MGP_AJ_G0015500.1 mouse_genomes_project 3 120893956 120900768 - 4930447N08Rik processed_transcript processed_transcript MGP_AJ_T0018005.1 MGP_AJ_G0015500.1 mouse_genomes_project 3 120893963 120900855 - 4930447N08Rik processed_transcript antisense MGP_AJ_T0007783.1 MGP_AJ_G0006360.1 mouse_genomes_project 3 149497843 149502236 + Gm42949 lincRNA lincRNA MGP_AJ_T0001262.1 MGP_AJ_G0001186.1 mouse_genomes_project 3 89804991 89809549 - TEC TEC MGP_AJ_T0060925.1 MGP_AJ_G0027187.1 mouse_genomes_project 3 54326020 54342375 - MGP_AJ_P0060925 Tm4sf1 protein_coding protein_coding MGP_AJ_T0060926.1 MGP_AJ_G0027187.1 mouse_genomes_project 3 54326020 54335322 - MGP_AJ_P0060926 Tm4sf1 protein_coding protein_coding MGP_AJ_T0060927.1 MGP_AJ_G0027187.1 mouse_genomes_project 3 54327893 54342427 - MGP_AJ_P0060927 Tm4sf1 protein_coding protein_coding MGP_AJ_T0060928.1 MGP_AJ_G0027187.1 mouse_genomes_project 3 54327925 54334985 - Tm4sf1 protein_coding processed_transcript MGP_AJ_T0060929.1 MGP_AJ_G0027187.1 mouse_genomes_project 3 54333215 54335558 - MGP_AJ_P0060929 Tm4sf1 protein_coding protein_coding MGP_AJ_T0060930.1 MGP_AJ_G0027187.1 mouse_genomes_project 3 54333251 54334136 - Tm4sf1 protein_coding retained_intron MGP_AJ_T0060937.1 MGP_AJ_G0027191.1 mouse_genomes_project 3 54708632 54739679 - MGP_AJ_P0060937 protein_coding nonsense_mediated_decay MGP_AJ_T0060938.1 MGP_AJ_G0027191.1 mouse_genomes_project 3 54708677 54739226 - MGP_AJ_P0060938 protein_coding unknown_likely_coding MGP_AJ_T0060939.1 MGP_AJ_G0027191.1 mouse_genomes_project 3 54716360 54739415 - MGP_AJ_P0060939 protein_coding protein_coding MGP_AJ_T0060940.1 MGP_AJ_G0027191.1 mouse_genomes_project 3 54718189 54739417 - MGP_AJ_P0060940 protein_coding protein_coding MGP_AJ_T0013928.1 MGP_AJ_G0012023.1 mouse_genomes_project 3 10548153 10548554 + processed_pseudogene processed_pseudogene MGP_AJ_T0014280.1 MGP_AJ_G0012375.1 mouse_genomes_project 3 117850743 117850917 + processed_pseudogene processed_pseudogene MGP_AJ_T0014057.1 MGP_AJ_G0012152.1 mouse_genomes_project 3 54569811 54570357 + processed_pseudogene processed_pseudogene MGP_AJ_T0060175.1 MGP_AJ_G0027056.1 mouse_genomes_project 3 16820791 16822787 - MGP_AJ_P0060175 Crh protein_coding protein_coding MGP_AJ_T0062407.1 MGP_AJ_G0027539.1 mouse_genomes_project 3 93023135 93027754 + Fam63a protein_coding processed_transcript MGP_AJ_T0062408.1 MGP_AJ_G0027539.1 mouse_genomes_project 3 93023207 93029627 + Fam63a protein_coding processed_transcript MGP_AJ_T0062409.1 MGP_AJ_G0027539.1 mouse_genomes_project 3 93023277 93025307 + Fam63a protein_coding processed_transcript MGP_AJ_T0062410.1 MGP_AJ_G0027539.1 mouse_genomes_project 3 93023635 93026648 + Fam63a protein_coding processed_transcript MGP_AJ_T0062411.1 MGP_AJ_G0027539.1 mouse_genomes_project 3 93024734 93037957 + MGP_AJ_P0062411 Fam63a protein_coding protein_coding MGP_AJ_T0062412.1 MGP_AJ_G0027539.1 mouse_genomes_project 3 93024734 93037957 + MGP_AJ_P0062412 Fam63a protein_coding protein_coding MGP_AJ_T0062413.1 MGP_AJ_G0027539.1 mouse_genomes_project 3 93025005 93033598 + Fam63a protein_coding retained_intron MGP_AJ_T0062414.1 MGP_AJ_G0027539.1 mouse_genomes_project 3 93025392 93029627 + Fam63a protein_coding processed_transcript MGP_AJ_T0062415.1 MGP_AJ_G0027539.1 mouse_genomes_project 3 93027629 93029805 + MGP_AJ_P0062415 Fam63a protein_coding protein_coding MGP_AJ_T0062416.1 MGP_AJ_G0027539.1 mouse_genomes_project 3 93027989 93029751 + Fam63a protein_coding processed_transcript MGP_AJ_T0062417.1 MGP_AJ_G0027539.1 mouse_genomes_project 3 93029738 93037954 + MGP_AJ_P0062417 Fam63a protein_coding protein_coding MGP_AJ_T0062418.1 MGP_AJ_G0027539.1 mouse_genomes_project 3 93033776 93037952 + Fam63a protein_coding processed_transcript MGP_AJ_T0014309.1 MGP_AJ_G0012404.1 mouse_genomes_project 3 128153322 128153673 + processed_pseudogene processed_pseudogene MGP_AJ_T0060134.1 MGP_AJ_G0027042.1 mouse_genomes_project 3 11957744 11959824 + Car3 protein_coding retained_intron MGP_AJ_T0060135.1 MGP_AJ_G0027042.1 mouse_genomes_project 3 11957770 11966813 + MGP_AJ_P0060135 Car3 protein_coding protein_coding MGP_AJ_T0060136.1 MGP_AJ_G0027042.1 mouse_genomes_project 3 11963452 11966361 + Car3 protein_coding retained_intron MGP_AJ_T0062987.1 MGP_AJ_G0027671.1 mouse_genomes_project 3 102736771 102758707 - MGP_AJ_P0062987 Mov10 protein_coding protein_coding MGP_AJ_T0062988.1 MGP_AJ_G0027671.1 mouse_genomes_project 3 102736771 102758707 - MGP_AJ_P0062988 Mov10 protein_coding protein_coding MGP_AJ_T0062989.1 MGP_AJ_G0027671.1 mouse_genomes_project 3 102736771 102758386 - MGP_AJ_P0062989 Mov10 protein_coding protein_coding MGP_AJ_T0062990.1 MGP_AJ_G0027671.1 mouse_genomes_project 3 102736771 102758707 - MGP_AJ_P0062990 Mov10 protein_coding nonsense_mediated_decay MGP_AJ_T0062991.1 MGP_AJ_G0027671.1 mouse_genomes_project 3 102736771 102758449 - MGP_AJ_P0062991 Mov10 protein_coding protein_coding MGP_AJ_T0062992.1 MGP_AJ_G0027671.1 mouse_genomes_project 3 102745827 102757498 - Mov10 protein_coding processed_transcript MGP_AJ_T0062993.1 MGP_AJ_G0027671.1 mouse_genomes_project 3 102745868 102758707 - MGP_AJ_P0062993 Mov10 protein_coding nonsense_mediated_decay MGP_AJ_T0062994.1 MGP_AJ_G0027671.1 mouse_genomes_project 3 102746685 102758260 - Mov10 protein_coding retained_intron MGP_AJ_T0062995.1 MGP_AJ_G0027671.1 mouse_genomes_project 3 102746706 102758445 - Mov10 protein_coding processed_transcript MGP_AJ_T0001241.1 MGP_AJ_G0001165.1 mouse_genomes_project 3 70234100 70235965 - TEC TEC MGP_AJ_T0014054.1 MGP_AJ_G0012149.1 mouse_genomes_project 3 54287808 54288061 + processed_pseudogene processed_pseudogene MGP_AJ_T0060673.1 MGP_AJ_G0027143.1 mouse_genomes_project 3 37936321 37941472 - MGP_AJ_P0060673 1700034I23Rik protein_coding protein_coding MGP_AJ_T0098670.1 MGP_AJ_G0036654.1 mouse_genomes_project 3 66870249 66870363 + Gm25621 rRNA rRNA MGP_AJ_T0101143.1 MGP_AJ_G0039109.1 mouse_genomes_project 3 87278975 87279111 - Gm24608 snoRNA snoRNA MGP_AJ_T0014005.1 MGP_AJ_G0012100.1 mouse_genomes_project 3 35584824 35585657 - processed_pseudogene processed_pseudogene MGP_AJ_T0013953.1 MGP_AJ_G0012048.1 mouse_genomes_project 3 16896697 16897080 + processed_pseudogene processed_pseudogene MGP_AJ_T0014160.1 MGP_AJ_G0012255.1 mouse_genomes_project 3 85439035 85439182 - processed_pseudogene processed_pseudogene MGP_AJ_T0004252.1 MGP_AJ_G0003737.1 mouse_genomes_project 3 59535865 59538874 - 9330121J05Rik antisense antisense MGP_AJ_T0004202.1 MGP_AJ_G0003700.1 mouse_genomes_project 3 4715295 4792136 + Gm16685 antisense antisense MGP_AJ_T0004211.1 MGP_AJ_G0003706.1 mouse_genomes_project 3 27815839 27822143 + Gm15462 antisense antisense MGP_AJ_T0007515.1 MGP_AJ_G0006155.1 mouse_genomes_project 3 34907618 34913858 + Gm42921 lincRNA lincRNA MGP_AJ_T0061430.1 MGP_AJ_G0027313.1 mouse_genomes_project 3 82778143 82792058 - Fam160a1 protein_coding retained_intron MGP_AJ_T0061431.1 MGP_AJ_G0027313.1 mouse_genomes_project 3 82778145 82935854 - MGP_AJ_P0061431 Fam160a1 protein_coding nonsense_mediated_decay MGP_AJ_T0061432.1 MGP_AJ_G0027313.1 mouse_genomes_project 3 82778145 82864574 - MGP_AJ_P0061432 Fam160a1 protein_coding protein_coding MGP_AJ_T0061433.1 MGP_AJ_G0027313.1 mouse_genomes_project 3 82778147 82859786 - MGP_AJ_P0061433 Fam160a1 protein_coding protein_coding MGP_AJ_T0014218.1 MGP_AJ_G0012313.1 mouse_genomes_project 3 99237322 99237752 + processed_pseudogene processed_pseudogene MGP_AJ_T0064152.1 MGP_AJ_G0027907.1 mouse_genomes_project 3 142495895 142636043 - MGP_AJ_P0064152 Hs2st1 protein_coding protein_coding MGP_AJ_T0064153.1 MGP_AJ_G0027907.1 mouse_genomes_project 3 142520152 142635743 - MGP_AJ_P0064153 Hs2st1 protein_coding nonsense_mediated_decay MGP_AJ_T0064154.1 MGP_AJ_G0027907.1 mouse_genomes_project 3 142633699 142636020 - Hs2st1 protein_coding retained_intron MGP_AJ_T0063996.1 MGP_AJ_G0027875.1 mouse_genomes_project 3 135915358 135963648 + MGP_AJ_P0063996 Dnajb14 protein_coding protein_coding MGP_AJ_T0063997.1 MGP_AJ_G0027875.1 mouse_genomes_project 3 135915570 135943736 + Dnajb14 protein_coding retained_intron MGP_AJ_T0063998.1 MGP_AJ_G0027875.1 mouse_genomes_project 3 135915864 135949854 + MGP_AJ_P0063998 Dnajb14 protein_coding protein_coding MGP_AJ_T0063999.1 MGP_AJ_G0027875.1 mouse_genomes_project 3 135952822 135956489 + Dnajb14 protein_coding retained_intron MGP_AJ_T0007771.1 MGP_AJ_G0006354.1 mouse_genomes_project 3 147416507 147581673 - Gm30382 lincRNA lincRNA MGP_AJ_T0007772.1 MGP_AJ_G0006354.1 mouse_genomes_project 3 147416965 147459530 - Gm30382 lincRNA lincRNA MGP_AJ_T0007774.1 MGP_AJ_G0006354.1 mouse_genomes_project 3 147448797 147581698 - Gm30382 lincRNA lincRNA MGP_AJ_T0063061.1 MGP_AJ_G0027688.1 mouse_genomes_project 3 103973571 103981564 - MGP_AJ_P0063061 Chil5 protein_coding protein_coding MGP_AJ_T0063062.1 MGP_AJ_G0027688.1 mouse_genomes_project 3 103973617 103981569 - MGP_AJ_P0063062 Chil5 protein_coding nonsense_mediated_decay MGP_AJ_T0063063.1 MGP_AJ_G0027688.1 mouse_genomes_project 3 103973784 103989300 - MGP_AJ_P0063063 Chil5 protein_coding protein_coding MGP_AJ_T0098990.1 MGP_AJ_G0036967.1 mouse_genomes_project 3 102046581 102049018 - Gm42700 sense_intronic sense_intronic MGP_AJ_T0061359.1 MGP_AJ_G0027295.1 mouse_genomes_project 3 80101379 80108652 + MGP_AJ_P0061359 Fgg protein_coding protein_coding MGP_AJ_T0061360.1 MGP_AJ_G0027295.1 mouse_genomes_project 3 80101516 80108308 + MGP_AJ_P0061360 Fgg protein_coding protein_coding MGP_AJ_T0063116.1 MGP_AJ_G0027704.1 mouse_genomes_project 3 105268692 105274546 - MGP_AJ_P0063116 Prok1 protein_coding protein_coding MGP_AJ_T0063117.1 MGP_AJ_G0027704.1 mouse_genomes_project 3 105268707 105273155 - Prok1 protein_coding retained_intron MGP_AJ_T0063118.1 MGP_AJ_G0027704.1 mouse_genomes_project 3 105271025 105275601 - MGP_AJ_P0063118 Prok1 protein_coding protein_coding MGP_AJ_T0102526.1 MGP_AJ_G0040268.1 mouse_genomes_project 3 18754135 18755834 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0062040.1 MGP_AJ_G0027421.1 mouse_genomes_project 3 87512729 87517134 + MGP_AJ_P0062040 Jtb protein_coding protein_coding MGP_AJ_T0062041.1 MGP_AJ_G0027421.1 mouse_genomes_project 3 87512744 87516840 + MGP_AJ_P0062041 Jtb protein_coding protein_coding MGP_AJ_T0062042.1 MGP_AJ_G0027421.1 mouse_genomes_project 3 87512766 87516715 + Jtb protein_coding retained_intron MGP_AJ_T0062043.1 MGP_AJ_G0027421.1 mouse_genomes_project 3 87513179 87515298 + Jtb protein_coding retained_intron MGP_AJ_T0101142.1 MGP_AJ_G0039108.1 mouse_genomes_project 3 86285009 86285139 - Gm24403 snoRNA snoRNA MGP_AJ_T0013980.1 MGP_AJ_G0012075.1 mouse_genomes_project 3 30392534 30392766 + processed_pseudogene processed_pseudogene MGP_AJ_T0102002.1 MGP_AJ_G0039815.1 mouse_genomes_project 3 28850092 28896713 - transcribed_unprocessed_pseudogene processed_transcript MGP_AJ_T0102527.1 MGP_AJ_G0040269.1 mouse_genomes_project 3 20206210 20208713 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0064274.1 MGP_AJ_G0027936.1 mouse_genomes_project 3 144776590 144782738 - MGP_AJ_P0064274 4930503B20Rik protein_coding protein_coding MGP_AJ_T0064279.1 MGP_AJ_G0027936.1 mouse_genomes_project 3 144777675 144779727 - 4930503B20Rik protein_coding processed_transcript MGP_AJ_T0064280.1 MGP_AJ_G0027936.1 mouse_genomes_project 3 144780986 144782736 - MGP_AJ_P0064280 4930503B20Rik protein_coding protein_coding MGP_AJ_T0062857.1 MGP_AJ_G0027647.1 mouse_genomes_project 3 100949822 100987392 + MGP_AJ_P0062857 Csde1 protein_coding protein_coding MGP_AJ_T0062858.1 MGP_AJ_G0027647.1 mouse_genomes_project 3 100949856 100987199 + MGP_AJ_P0062858 Csde1 protein_coding protein_coding MGP_AJ_T0062859.1 MGP_AJ_G0027647.1 mouse_genomes_project 3 100949862 100987394 + MGP_AJ_P0062859 Csde1 protein_coding protein_coding MGP_AJ_T0062860.1 MGP_AJ_G0027647.1 mouse_genomes_project 3 100949869 100986910 + MGP_AJ_P0062860 Csde1 protein_coding protein_coding MGP_AJ_T0062861.1 MGP_AJ_G0027647.1 mouse_genomes_project 3 100949913 100987012 + MGP_AJ_P0062861 Csde1 protein_coding protein_coding MGP_AJ_T0062862.1 MGP_AJ_G0027647.1 mouse_genomes_project 3 100958217 100971971 + Csde1 protein_coding retained_intron MGP_AJ_T0062863.1 MGP_AJ_G0027647.1 mouse_genomes_project 3 100958310 100960114 + Csde1 protein_coding retained_intron MGP_AJ_T0062864.1 MGP_AJ_G0027647.1 mouse_genomes_project 3 100959380 100973099 + Csde1 protein_coding processed_transcript MGP_AJ_T0062865.1 MGP_AJ_G0027647.1 mouse_genomes_project 3 100968953 100973851 + Csde1 protein_coding processed_transcript MGP_AJ_T0062866.1 MGP_AJ_G0027647.1 mouse_genomes_project 3 100969212 100973278 + Csde1 protein_coding retained_intron MGP_AJ_T0062867.1 MGP_AJ_G0027647.1 mouse_genomes_project 3 100969241 100976011 + MGP_AJ_P0062867 Csde1 protein_coding nonsense_mediated_decay MGP_AJ_T0062868.1 MGP_AJ_G0027647.1 mouse_genomes_project 3 100972406 100986994 + MGP_AJ_P0062868 Csde1 protein_coding nonsense_mediated_decay MGP_AJ_T0062869.1 MGP_AJ_G0027647.1 mouse_genomes_project 3 100972755 100973453 + Csde1 protein_coding retained_intron MGP_AJ_T0062870.1 MGP_AJ_G0027647.1 mouse_genomes_project 3 100979208 100980280 + Csde1 protein_coding retained_intron MGP_AJ_T0062871.1 MGP_AJ_G0027647.1 mouse_genomes_project 3 100985261 100986340 + Csde1 protein_coding retained_intron MGP_AJ_T0004251.1 MGP_AJ_G0003736.1 mouse_genomes_project 3 58549065 58552419 - Gm37696 antisense antisense MGP_AJ_T0062136.1 MGP_AJ_G0027442.1 mouse_genomes_project 3 87951401 87955881 + MGP_AJ_P0062136 S100a7a protein_coding protein_coding MGP_AJ_T0004240.1 MGP_AJ_G0003728.1 mouse_genomes_project 3 50141853 50144869 - Gm43803 antisense antisense MGP_AJ_T0004241.1 MGP_AJ_G0003728.1 mouse_genomes_project 3 50141870 50143173 - Gm43803 antisense antisense MGP_AJ_T0102546.1 MGP_AJ_G0040288.1 mouse_genomes_project 3 85544025 85545078 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0063211.1 MGP_AJ_G0027729.1 mouse_genomes_project 3 106256125 106261273 - MGP_AJ_P0063211 Cyb561d1 protein_coding protein_coding MGP_AJ_T0063212.1 MGP_AJ_G0027729.1 mouse_genomes_project 3 106256209 106261651 - Cyb561d1 protein_coding processed_transcript MGP_AJ_T0063213.1 MGP_AJ_G0027729.1 mouse_genomes_project 3 106256209 106261273 - MGP_AJ_P0063213 Cyb561d1 protein_coding protein_coding MGP_AJ_T0063214.1 MGP_AJ_G0027729.1 mouse_genomes_project 3 106258711 106261034 - MGP_AJ_P0063214 Cyb561d1 protein_coding protein_coding MGP_AJ_T0060173.1 MGP_AJ_G0027055.1 mouse_genomes_project 3 16766679 16819881 + MGP_AJ_P0060173 Trim55 protein_coding protein_coding MGP_AJ_T0060174.1 MGP_AJ_G0027055.1 mouse_genomes_project 3 16766713 16772243 + Trim55 protein_coding processed_transcript MGP_AJ_T0063718.1 MGP_AJ_G0027823.1 mouse_genomes_project 3 125833274 125842730 + MGP_AJ_P0063718 Tifa protein_coding protein_coding MGP_AJ_T0063719.1 MGP_AJ_G0027823.1 mouse_genomes_project 3 125833379 125877011 + Tifa protein_coding processed_transcript MGP_AJ_T0063720.1 MGP_AJ_G0027823.1 mouse_genomes_project 3 125833381 125842299 + MGP_AJ_P0063720 Tifa protein_coding protein_coding MGP_AJ_T0063721.1 MGP_AJ_G0027823.1 mouse_genomes_project 3 125834111 125842299 + MGP_AJ_P0063721 Tifa protein_coding protein_coding MGP_AJ_T0063722.1 MGP_AJ_G0027823.1 mouse_genomes_project 3 125834260 125842730 + MGP_AJ_P0063722 Tifa protein_coding protein_coding MGP_AJ_T0063941.1 MGP_AJ_G0027866.1 mouse_genomes_project 3 133515561 133609687 + MGP_AJ_P0063941 Manba protein_coding protein_coding MGP_AJ_T0063942.1 MGP_AJ_G0027866.1 mouse_genomes_project 3 133515561 133593727 + MGP_AJ_P0063942 Manba protein_coding nonsense_mediated_decay MGP_AJ_T0063943.1 MGP_AJ_G0027866.1 mouse_genomes_project 3 133515569 133593687 + Manba protein_coding retained_intron MGP_AJ_T0063944.1 MGP_AJ_G0027866.1 mouse_genomes_project 3 133515575 133549142 + Manba protein_coding retained_intron MGP_AJ_T0063945.1 MGP_AJ_G0027866.1 mouse_genomes_project 3 133553496 133579402 + Manba protein_coding processed_transcript MGP_AJ_T0063946.1 MGP_AJ_G0027866.1 mouse_genomes_project 3 133559542 133561167 + Manba protein_coding processed_transcript MGP_AJ_T0063947.1 MGP_AJ_G0027866.1 mouse_genomes_project 3 133581730 133589098 + Manba protein_coding retained_intron MGP_AJ_T0063948.1 MGP_AJ_G0027866.1 mouse_genomes_project 3 133586472 133592929 + Manba protein_coding processed_transcript MGP_AJ_T0063949.1 MGP_AJ_G0027866.1 mouse_genomes_project 3 133588484 133594937 + Manba protein_coding processed_transcript MGP_AJ_T0063950.1 MGP_AJ_G0027866.1 mouse_genomes_project 3 133588555 133601473 + Manba protein_coding processed_transcript MGP_AJ_T0063951.1 MGP_AJ_G0027866.1 mouse_genomes_project 3 133601433 133605836 + Manba protein_coding processed_transcript MGP_AJ_T0010555.1 MGP_AJ_G0008677.1 mouse_genomes_project 3 132247473 132247552 - Mir1895 miRNA miRNA MGP_AJ_T0007681.1 MGP_AJ_G0006281.1 mouse_genomes_project 3 116504795 116506023 + Gm9916 lincRNA lincRNA MGP_AJ_T0007552.1 MGP_AJ_G0006181.1 mouse_genomes_project 3 50750222 50758193 + Gm43565 lincRNA lincRNA MGP_AJ_T0063289.1 MGP_AJ_G0027746.1 mouse_genomes_project 3 106867048 106916817 - MGP_AJ_P0063289 Stxbp3 protein_coding protein_coding MGP_AJ_T0063290.1 MGP_AJ_G0027746.1 mouse_genomes_project 3 106868300 106877346 - Stxbp3 protein_coding retained_intron MGP_AJ_T0063291.1 MGP_AJ_G0027746.1 mouse_genomes_project 3 106868744 106872596 - Stxbp3 protein_coding retained_intron MGP_AJ_T0063292.1 MGP_AJ_G0027746.1 mouse_genomes_project 3 106874923 106880405 - Stxbp3 protein_coding retained_intron MGP_AJ_T0063293.1 MGP_AJ_G0027746.1 mouse_genomes_project 3 106884463 106916757 - MGP_AJ_P0063293 Stxbp3 protein_coding protein_coding MGP_AJ_T0063294.1 MGP_AJ_G0027746.1 mouse_genomes_project 3 106896953 106916821 - Stxbp3 protein_coding processed_transcript MGP_AJ_T0063295.1 MGP_AJ_G0027746.1 mouse_genomes_project 3 106899683 106916832 - MGP_AJ_P0063295 Stxbp3 protein_coding protein_coding MGP_AJ_T0063296.1 MGP_AJ_G0027746.1 mouse_genomes_project 3 106900768 106916816 - MGP_AJ_P0063296 Stxbp3 protein_coding protein_coding MGP_AJ_T0007604.1 MGP_AJ_G0006223.1 mouse_genomes_project 3 84270057 84274806 + Gm37855 lincRNA lincRNA MGP_AJ_T0007750.1 MGP_AJ_G0006337.1 mouse_genomes_project 3 141710012 141711790 + Gm42704 lincRNA lincRNA MGP_AJ_T0014149.1 MGP_AJ_G0012244.1 mouse_genomes_project 3 81664094 81665085 - processed_pseudogene processed_pseudogene MGP_AJ_T0017955.1 MGP_AJ_G0015482.1 mouse_genomes_project 3 61297325 62090297 - processed_transcript processed_transcript MGP_AJ_T0010500.1 MGP_AJ_G0008622.1 mouse_genomes_project 3 25552066 25552140 + Mir466q miRNA miRNA MGP_AJ_T0062182.1 MGP_AJ_G0027479.1 mouse_genomes_project 3 90243260 90245072 - MGP_AJ_P0062182 Lce1f protein_coding protein_coding MGP_AJ_T0102549.1 MGP_AJ_G0040291.1 mouse_genomes_project 3 87232089 87235336 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0007748.1 MGP_AJ_G0006335.1 mouse_genomes_project 3 141634620 141647166 + Gm33651 lincRNA lincRNA MGP_AJ_T0014095.1 MGP_AJ_G0012190.1 mouse_genomes_project 3 64092348 64093137 + processed_pseudogene processed_pseudogene MGP_AJ_T0060209.1 MGP_AJ_G0027060.1 mouse_genomes_project 3 17255029 17288263 - MGP_AJ_P0060209 Gyg protein_coding protein_coding MGP_AJ_T0060210.1 MGP_AJ_G0027060.1 mouse_genomes_project 3 17255032 17288042 - MGP_AJ_P0060210 Gyg protein_coding protein_coding MGP_AJ_T0060211.1 MGP_AJ_G0027060.1 mouse_genomes_project 3 17255092 17288015 - MGP_AJ_P0060211 Gyg protein_coding protein_coding MGP_AJ_T0060212.1 MGP_AJ_G0027060.1 mouse_genomes_project 3 17255501 17256489 - Gyg protein_coding retained_intron MGP_AJ_T0061718.1 MGP_AJ_G0027369.1 mouse_genomes_project 3 85830709 85831954 - MGP_AJ_P0061718 Rxfp4 protein_coding protein_coding MGP_AJ_T0004270.1 MGP_AJ_G0003750.1 mouse_genomes_project 3 83877144 83887728 - Gm37876 antisense antisense MGP_AJ_T0061816.1 MGP_AJ_G0027385.1 mouse_genomes_project 3 86442781 86448535 + MGP_AJ_P0061816 Gba protein_coding protein_coding MGP_AJ_T0061817.1 MGP_AJ_G0027385.1 mouse_genomes_project 3 86442789 86448537 + MGP_AJ_P0061817 Gba protein_coding nonsense_mediated_decay MGP_AJ_T0061818.1 MGP_AJ_G0027385.1 mouse_genomes_project 3 86442793 86448537 + MGP_AJ_P0061818 Gba protein_coding protein_coding MGP_AJ_T0061819.1 MGP_AJ_G0027385.1 mouse_genomes_project 3 86445340 86446244 + Gba protein_coding retained_intron MGP_AJ_T0061820.1 MGP_AJ_G0027385.1 mouse_genomes_project 3 86448072 86448822 + Gba protein_coding retained_intron MGP_AJ_T0061089.1 MGP_AJ_G0027230.1 mouse_genomes_project 3 61603787 61629951 - MGP_AJ_P0061089 Vmn2r4 protein_coding protein_coding MGP_AJ_T0063312.1 MGP_AJ_G0027749.1 mouse_genomes_project 3 107020148 107020720 + Henmt1 protein_coding processed_transcript MGP_AJ_T0063314.1 MGP_AJ_G0027749.1 mouse_genomes_project 3 107020334 107023007 + MGP_AJ_P0063314 Henmt1 protein_coding protein_coding MGP_AJ_T0063315.1 MGP_AJ_G0027749.1 mouse_genomes_project 3 107020359 107037531 + MGP_AJ_P0063315 Henmt1 protein_coding protein_coding MGP_AJ_T0063316.1 MGP_AJ_G0027749.1 mouse_genomes_project 3 107020389 107036176 + MGP_AJ_P0063316 Henmt1 protein_coding protein_coding MGP_AJ_T0063317.1 MGP_AJ_G0027749.1 mouse_genomes_project 3 107020773 107037629 + MGP_AJ_P0063317 Henmt1 protein_coding protein_coding MGP_AJ_T0063318.1 MGP_AJ_G0027749.1 mouse_genomes_project 3 107021584 107037070 + MGP_AJ_P0063318 Henmt1 protein_coding nonsense_mediated_decay MGP_AJ_T0063319.1 MGP_AJ_G0027749.1 mouse_genomes_project 3 107021584 107037543 + MGP_AJ_P0063319 Henmt1 protein_coding protein_coding MGP_AJ_T0063712.1 MGP_AJ_G0027822.1 mouse_genomes_project 3 125720305 125821463 - MGP_AJ_P0063712 Alpk1 protein_coding protein_coding MGP_AJ_T0063713.1 MGP_AJ_G0027822.1 mouse_genomes_project 3 125720305 125780299 - MGP_AJ_P0063713 Alpk1 protein_coding protein_coding MGP_AJ_T0063714.1 MGP_AJ_G0027822.1 mouse_genomes_project 3 125720394 125821463 - Alpk1 protein_coding retained_intron MGP_AJ_T0063715.1 MGP_AJ_G0027822.1 mouse_genomes_project 3 125729299 125736068 - MGP_AJ_P0063715 Alpk1 protein_coding protein_coding MGP_AJ_T0063716.1 MGP_AJ_G0027822.1 mouse_genomes_project 3 125775076 125821449 - Alpk1 protein_coding retained_intron MGP_AJ_T0063717.1 MGP_AJ_G0027822.1 mouse_genomes_project 3 125803069 125821426 - Alpk1 protein_coding processed_transcript MGP_AJ_T0101175.1 MGP_AJ_G0039141.1 mouse_genomes_project 3 152081932 152082057 + Gm24395 snoRNA snoRNA MGP_AJ_T0060546.1 MGP_AJ_G0027121.1 mouse_genomes_project 3 33712749 33719984 - MGP_AJ_P0060546 Ccna2 protein_coding protein_coding MGP_AJ_T0060547.1 MGP_AJ_G0027121.1 mouse_genomes_project 3 33713529 33714746 - Ccna2 protein_coding processed_transcript MGP_AJ_T0060548.1 MGP_AJ_G0027121.1 mouse_genomes_project 3 33713873 33719385 - MGP_AJ_P0060548 Ccna2 protein_coding protein_coding MGP_AJ_T0060549.1 MGP_AJ_G0027121.1 mouse_genomes_project 3 33713873 33719761 - MGP_AJ_P0060549 Ccna2 protein_coding nonsense_mediated_decay MGP_AJ_T0060550.1 MGP_AJ_G0027121.1 mouse_genomes_project 3 33718280 33719798 - Ccna2 protein_coding retained_intron MGP_AJ_T0013911.1 MGP_AJ_G0012006.1 mouse_genomes_project 3 5975506 5975839 - processed_pseudogene processed_pseudogene MGP_AJ_T0013955.1 MGP_AJ_G0012050.1 mouse_genomes_project 3 17535274 17536247 - processed_pseudogene processed_pseudogene MGP_AJ_T0014358.1 MGP_AJ_G0012453.1 mouse_genomes_project 3 141932559 141933384 + processed_pseudogene processed_pseudogene MGP_AJ_T0004236.1 MGP_AJ_G0003724.1 mouse_genomes_project 3 48832216 48838617 + Gm37229 antisense antisense MGP_AJ_T0013965.1 MGP_AJ_G0012060.1 mouse_genomes_project 3 22085998 22086281 - processed_pseudogene processed_pseudogene MGP_AJ_T0064228.1 MGP_AJ_G0027925.1 mouse_genomes_project 3 144180464 144241419 - MGP_AJ_P0064228 Wdr63 protein_coding protein_coding MGP_AJ_T0064229.1 MGP_AJ_G0027925.1 mouse_genomes_project 3 144180466 144188169 - Wdr63 protein_coding processed_transcript MGP_AJ_T0064230.1 MGP_AJ_G0027925.1 mouse_genomes_project 3 144182713 144189421 - Wdr63 protein_coding processed_transcript MGP_AJ_T0102558.1 MGP_AJ_G0040300.1 mouse_genomes_project 3 91621441 91621844 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0064083.1 MGP_AJ_G0027895.1 mouse_genomes_project 3 139499203 139863732 + MGP_AJ_P0064083 Unc5c protein_coding protein_coding MGP_AJ_T0064084.1 MGP_AJ_G0027895.1 mouse_genomes_project 3 139499561 139858273 + MGP_AJ_P0064084 Unc5c protein_coding protein_coding MGP_AJ_T0064085.1 MGP_AJ_G0027895.1 mouse_genomes_project 3 139499586 139695367 + Unc5c protein_coding processed_transcript MGP_AJ_T0064086.1 MGP_AJ_G0027895.1 mouse_genomes_project 3 139499586 139504926 + Unc5c protein_coding retained_intron MGP_AJ_T0064087.1 MGP_AJ_G0027895.1 mouse_genomes_project 3 139499586 139717155 + Unc5c protein_coding retained_intron MGP_AJ_T0064088.1 MGP_AJ_G0027895.1 mouse_genomes_project 3 139499586 139858225 + MGP_AJ_P0064088 Unc5c protein_coding protein_coding MGP_AJ_T0064089.1 MGP_AJ_G0027895.1 mouse_genomes_project 3 139499658 139859342 + MGP_AJ_P0064089 Unc5c protein_coding nonsense_mediated_decay MGP_AJ_T0064090.1 MGP_AJ_G0027895.1 mouse_genomes_project 3 139818494 139820761 + Unc5c protein_coding retained_intron MGP_AJ_T0063220.1 MGP_AJ_G0027731.1 mouse_genomes_project 3 106271910 106287083 - MGP_AJ_P0063220 Sypl2 protein_coding protein_coding MGP_AJ_T0063221.1 MGP_AJ_G0027731.1 mouse_genomes_project 3 106277739 106287078 - Sypl2 protein_coding retained_intron MGP_AJ_T0062616.1 MGP_AJ_G0027587.1 mouse_genomes_project 3 94401962 94411952 + Pex11b protein_coding processed_transcript MGP_AJ_T0062617.1 MGP_AJ_G0027587.1 mouse_genomes_project 3 94402016 94411952 + MGP_AJ_P0062617 Pex11b protein_coding protein_coding MGP_AJ_T0062619.1 MGP_AJ_G0027587.1 mouse_genomes_project 3 94402086 94410619 + MGP_AJ_P0062619 Pex11b protein_coding nonsense_mediated_decay MGP_AJ_T0062620.1 MGP_AJ_G0027587.1 mouse_genomes_project 3 94402239 94403540 + Pex11b protein_coding retained_intron MGP_AJ_T0062621.1 MGP_AJ_G0027587.1 mouse_genomes_project 3 94402258 94411312 + MGP_AJ_P0062621 Pex11b protein_coding protein_coding MGP_AJ_T0062622.1 MGP_AJ_G0027587.1 mouse_genomes_project 3 94402419 94411312 + MGP_AJ_P0062622 Pex11b protein_coding protein_coding MGP_AJ_T0062623.1 MGP_AJ_G0027587.1 mouse_genomes_project 3 94403639 94410386 + Pex11b protein_coding retained_intron MGP_AJ_T0060931.1 MGP_AJ_G0027188.1 mouse_genomes_project 3 54460403 54477126 + MGP_AJ_P0060931 Tm4sf4 protein_coding protein_coding MGP_AJ_T0061155.1 MGP_AJ_G0027245.1 mouse_genomes_project 3 64776575 64797927 + MGP_AJ_P0061155 Mfsd1 protein_coding protein_coding MGP_AJ_T0061156.1 MGP_AJ_G0027245.1 mouse_genomes_project 3 64778580 64789898 + Mfsd1 protein_coding processed_transcript MGP_AJ_T0098839.1 MGP_AJ_G0036823.1 mouse_genomes_project 3 85865920 85866048 + Gm25820 scaRNA scaRNA MGP_AJ_T0010548.1 MGP_AJ_G0008670.1 mouse_genomes_project 3 125587070 125587144 + Mir302b miRNA miRNA MGP_AJ_T0010515.1 MGP_AJ_G0008637.1 mouse_genomes_project 3 66195480 66195544 + Mir15b miRNA miRNA MGP_AJ_T0063930.1 MGP_AJ_G0027865.1 mouse_genomes_project 3 133461954 133489304 + MGP_AJ_P0063930 Ube2d3 protein_coding protein_coding MGP_AJ_T0063931.1 MGP_AJ_G0027865.1 mouse_genomes_project 3 133462121 133489353 + MGP_AJ_P0063931 Ube2d3 protein_coding protein_coding MGP_AJ_T0063932.1 MGP_AJ_G0027865.1 mouse_genomes_project 3 133462334 133465403 + Ube2d3 protein_coding processed_transcript MGP_AJ_T0063933.1 MGP_AJ_G0027865.1 mouse_genomes_project 3 133462338 133483862 + MGP_AJ_P0063933 Ube2d3 protein_coding protein_coding MGP_AJ_T0063934.1 MGP_AJ_G0027865.1 mouse_genomes_project 3 133462348 133487108 + MGP_AJ_P0063934 Ube2d3 protein_coding protein_coding MGP_AJ_T0063935.1 MGP_AJ_G0027865.1 mouse_genomes_project 3 133462370 133496823 + MGP_AJ_P0063935 Ube2d3 protein_coding protein_coding MGP_AJ_T0063936.1 MGP_AJ_G0027865.1 mouse_genomes_project 3 133462552 133479116 + MGP_AJ_P0063936 Ube2d3 protein_coding protein_coding MGP_AJ_T0063937.1 MGP_AJ_G0027865.1 mouse_genomes_project 3 133462559 133489364 + MGP_AJ_P0063937 Ube2d3 protein_coding nonsense_mediated_decay MGP_AJ_T0063938.1 MGP_AJ_G0027865.1 mouse_genomes_project 3 133462669 133482030 + Ube2d3 protein_coding retained_intron MGP_AJ_T0063939.1 MGP_AJ_G0027865.1 mouse_genomes_project 3 133478492 133484017 + Ube2d3 protein_coding retained_intron MGP_AJ_T0063940.1 MGP_AJ_G0027865.1 mouse_genomes_project 3 133482514 133484753 + Ube2d3 protein_coding retained_intron MGP_AJ_T0001215.1 MGP_AJ_G0001139.1 mouse_genomes_project 3 52391004 52393136 + TEC TEC MGP_AJ_T0001331.1 MGP_AJ_G0001255.1 mouse_genomes_project 3 125175742 125178916 - TEC TEC MGP_AJ_T0017945.1 MGP_AJ_G0015478.1 mouse_genomes_project 3 42297654 42401955 - processed_transcript lincRNA MGP_AJ_T0017946.1 MGP_AJ_G0015478.1 mouse_genomes_project 3 42298567 42387804 - processed_transcript lincRNA MGP_AJ_T0017947.1 MGP_AJ_G0015478.1 mouse_genomes_project 3 42357045 42401900 - processed_transcript retained_intron MGP_AJ_T0062520.1 MGP_AJ_G0027555.1 mouse_genomes_project 3 93616402 93625288 - MGP_AJ_P0062520 Mrps21 protein_coding protein_coding MGP_AJ_T0062521.1 MGP_AJ_G0027555.1 mouse_genomes_project 3 93616422 93624388 - MGP_AJ_P0062521 Mrps21 protein_coding protein_coding MGP_AJ_T0062522.1 MGP_AJ_G0027555.1 mouse_genomes_project 3 93616424 93617076 - Mrps21 protein_coding processed_transcript MGP_AJ_T0062523.1 MGP_AJ_G0027555.1 mouse_genomes_project 3 93616652 93625136 - MGP_AJ_P0062523 Mrps21 protein_coding protein_coding MGP_AJ_T0013977.1 MGP_AJ_G0012072.1 mouse_genomes_project 3 28114969 28115432 + processed_pseudogene processed_pseudogene MGP_AJ_T0004249.1 MGP_AJ_G0003734.1 mouse_genomes_project 3 56396071 56403913 + Gm38186 antisense antisense MGP_AJ_T0062165.1 MGP_AJ_G0027464.1 mouse_genomes_project 3 89959206 89961187 - MGP_AJ_P0062165 Sprr1b protein_coding protein_coding MGP_AJ_T0063055.1 MGP_AJ_G0027686.1 mouse_genomes_project 3 103929132 103942936 + MGP_AJ_P0063055 Ovgp1 protein_coding protein_coding MGP_AJ_T0063056.1 MGP_AJ_G0027686.1 mouse_genomes_project 3 103929504 103941474 + MGP_AJ_P0063056 Ovgp1 protein_coding nonsense_mediated_decay MGP_AJ_T0063057.1 MGP_AJ_G0027686.1 mouse_genomes_project 3 103932707 103935565 + Ovgp1 protein_coding retained_intron MGP_AJ_T0063058.1 MGP_AJ_G0027686.1 mouse_genomes_project 3 103935540 103940172 + Ovgp1 protein_coding processed_transcript MGP_AJ_T0062148.1 MGP_AJ_G0027450.1 mouse_genomes_project 3 89592329 89594071 - MGP_AJ_P0062148 Prr9 protein_coding protein_coding MGP_AJ_T0060590.1 MGP_AJ_G0027126.1 mouse_genomes_project 3 34270358 34275797 - MGP_AJ_P0060590 Il2 protein_coding protein_coding MGP_AJ_T0061425.1 MGP_AJ_G0027312.1 mouse_genomes_project 3 82698542 82773707 + MGP_AJ_P0061425 Gatb protein_coding protein_coding MGP_AJ_T0061426.1 MGP_AJ_G0027312.1 mouse_genomes_project 3 82698542 82764647 + MGP_AJ_P0061426 Gatb protein_coding protein_coding MGP_AJ_T0061427.1 MGP_AJ_G0027312.1 mouse_genomes_project 3 82698550 82770902 + MGP_AJ_P0061427 Gatb protein_coding protein_coding MGP_AJ_T0061428.1 MGP_AJ_G0027312.1 mouse_genomes_project 3 82698555 82700465 + Gatb protein_coding processed_transcript MGP_AJ_T0061429.1 MGP_AJ_G0027312.1 mouse_genomes_project 3 82698618 82772226 + Gatb protein_coding processed_transcript MGP_AJ_T0098981.1 MGP_AJ_G0036958.1 mouse_genomes_project 3 101026861 101027937 + Gm43063 sense_intronic sense_intronic MGP_AJ_T0061084.1 MGP_AJ_G0027227.1 mouse_genomes_project 3 61295668 61318760 - MGP_AJ_P0061084 protein_coding protein_coding MGP_AJ_T0061085.1 MGP_AJ_G0027227.1 mouse_genomes_project 3 61295668 61321898 - MGP_AJ_P0061085 protein_coding protein_coding MGP_AJ_T0061086.1 MGP_AJ_G0027228.1 mouse_genomes_project 3 61295668 61322928 - MGP_AJ_P0061086 protein_coding protein_coding MGP_AJ_T0013890.1 MGP_AJ_G0011985.1 mouse_genomes_project 3 337627 338378 - processed_pseudogene processed_pseudogene MGP_AJ_T0007646.1 MGP_AJ_G0006252.1 mouse_genomes_project 3 99677074 99678931 + Gm43134 lincRNA lincRNA MGP_AJ_T0014248.1 MGP_AJ_G0012343.1 mouse_genomes_project 3 106958814 106958965 + processed_pseudogene processed_pseudogene MGP_AJ_T0060617.1 MGP_AJ_G0027132.1 mouse_genomes_project 3 34565361 34723275 + MGP_AJ_P0060617 Spata5 protein_coding protein_coding MGP_AJ_T0060618.1 MGP_AJ_G0027132.1 mouse_genomes_project 3 34565773 34723275 + MGP_AJ_P0060618 Spata5 protein_coding protein_coding MGP_AJ_T0060619.1 MGP_AJ_G0027132.1 mouse_genomes_project 3 34565787 34723275 + MGP_AJ_P0060619 Spata5 protein_coding protein_coding MGP_AJ_T0060620.1 MGP_AJ_G0027132.1 mouse_genomes_project 3 34565848 34572391 + Spata5 protein_coding processed_transcript MGP_AJ_T0060621.1 MGP_AJ_G0027132.1 mouse_genomes_project 3 34566327 34573153 + Spata5 protein_coding processed_transcript MGP_AJ_T0060622.1 MGP_AJ_G0027132.1 mouse_genomes_project 3 34579097 34586351 + Spata5 protein_coding processed_transcript MGP_AJ_T0060623.1 MGP_AJ_G0027132.1 mouse_genomes_project 3 34583765 34586471 + Spata5 protein_coding retained_intron MGP_AJ_T0060624.1 MGP_AJ_G0027132.1 mouse_genomes_project 3 34598736 34678835 + Spata5 protein_coding retained_intron MGP_AJ_T0060625.1 MGP_AJ_G0027132.1 mouse_genomes_project 3 34642864 34723188 + Spata5 protein_coding processed_transcript MGP_AJ_T0060626.1 MGP_AJ_G0027132.1 mouse_genomes_project 3 34717870 34723269 + Spata5 protein_coding processed_transcript MGP_AJ_T0001264.1 MGP_AJ_G0001188.1 mouse_genomes_project 3 90971930 90973129 + TEC TEC MGP_AJ_T0007682.1 MGP_AJ_G0006282.1 mouse_genomes_project 3 118701624 118965905 - lincRNA lincRNA MGP_AJ_T0007683.1 MGP_AJ_G0006282.1 mouse_genomes_project 3 118787383 118965904 - lincRNA lincRNA MGP_AJ_T0007684.1 MGP_AJ_G0006282.1 mouse_genomes_project 3 118791876 118965886 - lincRNA lincRNA MGP_AJ_T0007685.1 MGP_AJ_G0006282.1 mouse_genomes_project 3 118861521 118965863 - lincRNA lincRNA MGP_AJ_T0007530.1 MGP_AJ_G0006166.1 mouse_genomes_project 3 38517348 38521657 - Gm42434 lincRNA lincRNA MGP_AJ_T0007531.1 MGP_AJ_G0006166.1 mouse_genomes_project 3 38521532 38522163 - Gm42434 lincRNA lincRNA MGP_AJ_T0060406.1 MGP_AJ_G0027099.1 mouse_genomes_project 3 29714923 29766796 + MGP_AJ_P0060406 Mfn1 protein_coding protein_coding MGP_AJ_T0060407.1 MGP_AJ_G0027099.1 mouse_genomes_project 3 29714989 29732500 + Mfn1 protein_coding retained_intron MGP_AJ_T0060408.1 MGP_AJ_G0027099.1 mouse_genomes_project 3 29714997 29732213 + MGP_AJ_P0060408 Mfn1 protein_coding protein_coding MGP_AJ_T0060409.1 MGP_AJ_G0027099.1 mouse_genomes_project 3 29716990 29729651 + MGP_AJ_P0060409 Mfn1 protein_coding protein_coding MGP_AJ_T0060410.1 MGP_AJ_G0027099.1 mouse_genomes_project 3 29716999 29764914 + MGP_AJ_P0060410 Mfn1 protein_coding protein_coding MGP_AJ_T0060411.1 MGP_AJ_G0027099.1 mouse_genomes_project 3 29732048 29748277 + Mfn1 protein_coding retained_intron MGP_AJ_T0060412.1 MGP_AJ_G0027099.1 mouse_genomes_project 3 29739255 29748546 + Mfn1 protein_coding retained_intron MGP_AJ_T0060413.1 MGP_AJ_G0027099.1 mouse_genomes_project 3 29746689 29758027 + MGP_AJ_P0060413 Mfn1 protein_coding protein_coding MGP_AJ_T0060414.1 MGP_AJ_G0027099.1 mouse_genomes_project 3 29748050 29748944 + Mfn1 protein_coding retained_intron MGP_AJ_T0060415.1 MGP_AJ_G0027099.1 mouse_genomes_project 3 29761855 29764718 + Mfn1 protein_coding retained_intron MGP_AJ_T0001315.1 MGP_AJ_G0001239.1 mouse_genomes_project 3 121776131 121780156 - TEC TEC MGP_AJ_T0007486.1 MGP_AJ_G0006129.1 mouse_genomes_project 3 20214690 20217665 + Gm37021 lincRNA lincRNA MGP_AJ_T0060867.1 MGP_AJ_G0027175.1 mouse_genomes_project 3 51791436 51805822 + MGP_AJ_P0060867 Alg5 protein_coding protein_coding MGP_AJ_T0060868.1 MGP_AJ_G0027175.1 mouse_genomes_project 3 51791456 51807345 + MGP_AJ_P0060868 Alg5 protein_coding nonsense_mediated_decay MGP_AJ_T0060869.1 MGP_AJ_G0027175.1 mouse_genomes_project 3 51791464 51801497 + MGP_AJ_P0060869 Alg5 protein_coding nonsense_mediated_decay MGP_AJ_T0060870.1 MGP_AJ_G0027175.1 mouse_genomes_project 3 51791470 51795633 + Alg5 protein_coding retained_intron MGP_AJ_T0063926.1 MGP_AJ_G0027864.1 mouse_genomes_project 3 133429712 133447630 - MGP_AJ_P0063926 Cisd2 protein_coding protein_coding MGP_AJ_T0063927.1 MGP_AJ_G0027864.1 mouse_genomes_project 3 133433436 133447112 - MGP_AJ_P0063927 Cisd2 protein_coding protein_coding MGP_AJ_T0063928.1 MGP_AJ_G0027864.1 mouse_genomes_project 3 133443656 133447109 - Cisd2 protein_coding retained_intron MGP_AJ_T0063929.1 MGP_AJ_G0027864.1 mouse_genomes_project 3 133444562 133446784 - Cisd2 protein_coding processed_transcript MGP_AJ_T0061472.1 MGP_AJ_G0027326.1 mouse_genomes_project 3 84499425 84514734 + MGP_AJ_P0061472 Fcrl1 protein_coding protein_coding MGP_AJ_T0061473.1 MGP_AJ_G0027326.1 mouse_genomes_project 3 84499427 84515127 + MGP_AJ_P0061473 Fcrl1 protein_coding protein_coding MGP_AJ_T0061474.1 MGP_AJ_G0027326.1 mouse_genomes_project 3 84499486 84515128 + MGP_AJ_P0061474 Fcrl1 protein_coding protein_coding MGP_AJ_T0061475.1 MGP_AJ_G0027326.1 mouse_genomes_project 3 84499498 84525373 + MGP_AJ_P0061475 Fcrl1 protein_coding protein_coding MGP_AJ_T0061476.1 MGP_AJ_G0027326.1 mouse_genomes_project 3 84499505 84514748 + MGP_AJ_P0061476 Fcrl1 protein_coding protein_coding MGP_AJ_T0061477.1 MGP_AJ_G0027326.1 mouse_genomes_project 3 84499533 84514285 + MGP_AJ_P0061477 Fcrl1 protein_coding unknown_likely_coding MGP_AJ_T0061478.1 MGP_AJ_G0027326.1 mouse_genomes_project 3 84508631 84515092 + Fcrl1 protein_coding retained_intron MGP_AJ_T0063246.1 MGP_AJ_G0027737.1 mouse_genomes_project 3 106487886 106508240 - MGP_AJ_P0063246 Sars protein_coding protein_coding MGP_AJ_T0063247.1 MGP_AJ_G0027737.1 mouse_genomes_project 3 106489633 106508211 - MGP_AJ_P0063247 Sars protein_coding protein_coding MGP_AJ_T0063248.1 MGP_AJ_G0027737.1 mouse_genomes_project 3 106491252 106508185 - MGP_AJ_P0063248 Sars protein_coding protein_coding MGP_AJ_T0063249.1 MGP_AJ_G0027737.1 mouse_genomes_project 3 106492371 106508251 - MGP_AJ_P0063249 Sars protein_coding protein_coding MGP_AJ_T0063250.1 MGP_AJ_G0027737.1 mouse_genomes_project 3 106497418 106508198 - Sars protein_coding retained_intron MGP_AJ_T0014326.1 MGP_AJ_G0012421.1 mouse_genomes_project 3 132997767 132998284 + processed_pseudogene processed_pseudogene MGP_AJ_T0014296.1 MGP_AJ_G0012391.1 mouse_genomes_project 3 121844049 121844650 + processed_pseudogene processed_pseudogene MGP_AJ_T0014243.1 MGP_AJ_G0012338.1 mouse_genomes_project 3 106050194 106050597 - processed_pseudogene processed_pseudogene MGP_AJ_T0102570.1 MGP_AJ_G0040312.1 mouse_genomes_project 3 106086812 106088574 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0061102.1 MGP_AJ_G0027234.1 mouse_genomes_project 3 62911243 62931453 + MGP_AJ_P0061102 Lekr1 protein_coding protein_coding MGP_AJ_T0061103.1 MGP_AJ_G0027234.1 mouse_genomes_project 3 62911250 62929498 + Lekr1 protein_coding processed_transcript MGP_AJ_T0061104.1 MGP_AJ_G0027234.1 mouse_genomes_project 3 62911261 62987333 + Lekr1 protein_coding processed_transcript MGP_AJ_T0061105.1 MGP_AJ_G0027234.1 mouse_genomes_project 3 62911283 62913452 + Lekr1 protein_coding retained_intron MGP_AJ_T0061106.1 MGP_AJ_G0027234.1 mouse_genomes_project 3 62911297 63019436 + Lekr1 protein_coding processed_transcript MGP_AJ_T0061107.1 MGP_AJ_G0027234.1 mouse_genomes_project 3 62911332 62976051 + Lekr1 protein_coding processed_transcript MGP_AJ_T0061108.1 MGP_AJ_G0027234.1 mouse_genomes_project 3 62929326 63077396 + Lekr1 protein_coding processed_transcript MGP_AJ_T0007767.1 MGP_AJ_G0006351.1 mouse_genomes_project 3 145551786 145556163 + Gm37041 lincRNA lincRNA MGP_AJ_T0001312.1 MGP_AJ_G0001236.1 mouse_genomes_project 3 121271122 121271722 - TEC TEC MGP_AJ_T0063866.1 MGP_AJ_G0027853.1 mouse_genomes_project 3 130982483 131088854 - MGP_AJ_P0063866 Gstcd protein_coding protein_coding MGP_AJ_T0063867.1 MGP_AJ_G0027853.1 mouse_genomes_project 3 130983553 131089062 - MGP_AJ_P0063867 Gstcd protein_coding protein_coding MGP_AJ_T0063868.1 MGP_AJ_G0027853.1 mouse_genomes_project 3 130996091 131005735 - Gstcd protein_coding retained_intron MGP_AJ_T0063869.1 MGP_AJ_G0027853.1 mouse_genomes_project 3 130998888 131088776 - Gstcd protein_coding processed_transcript MGP_AJ_T0063870.1 MGP_AJ_G0027853.1 mouse_genomes_project 3 131078257 131088807 - Gstcd protein_coding retained_intron MGP_AJ_T0063871.1 MGP_AJ_G0027853.1 mouse_genomes_project 3 131078453 131080157 - Gstcd protein_coding retained_intron MGP_AJ_T0063743.1 MGP_AJ_G0027827.1 mouse_genomes_project 3 127334074 127397923 - MGP_AJ_P0063743 Enpep protein_coding protein_coding MGP_AJ_T0063744.1 MGP_AJ_G0027827.1 mouse_genomes_project 3 127335176 127397467 - MGP_AJ_P0063744 Enpep protein_coding nonsense_mediated_decay MGP_AJ_T0063745.1 MGP_AJ_G0027827.1 mouse_genomes_project 3 127342016 127346515 - Enpep protein_coding retained_intron MGP_AJ_T0063746.1 MGP_AJ_G0027827.1 mouse_genomes_project 3 127342187 127374416 - MGP_AJ_P0063746 Enpep protein_coding nonsense_mediated_decay MGP_AJ_T0063747.1 MGP_AJ_G0027827.1 mouse_genomes_project 3 127363987 127397923 - Enpep protein_coding retained_intron MGP_AJ_T0004235.1 MGP_AJ_G0003723.1 mouse_genomes_project 3 42440915 42463632 - 1700027H10Rik antisense antisense MGP_AJ_T0062363.1 MGP_AJ_G0027529.1 mouse_genomes_project 3 92873584 92880624 + MGP_AJ_P0062363 protein_coding protein_coding MGP_AJ_T0010522.1 MGP_AJ_G0008644.1 mouse_genomes_project 3 85365467 85365575 - Gm25641 miRNA miRNA MGP_AJ_T0007571.1 MGP_AJ_G0006195.1 mouse_genomes_project 3 65950518 65952034 - 4930535E02Rik lincRNA lincRNA MGP_AJ_T0064161.1 MGP_AJ_G0027909.1 mouse_genomes_project 3 142748097 142784531 - MGP_AJ_P0064161 Sh3glb1 protein_coding protein_coding MGP_AJ_T0064162.1 MGP_AJ_G0027909.1 mouse_genomes_project 3 142749314 142761888 - MGP_AJ_P0064162 Sh3glb1 protein_coding protein_coding MGP_AJ_T0064163.1 MGP_AJ_G0027909.1 mouse_genomes_project 3 142751330 142784744 - MGP_AJ_P0064163 Sh3glb1 protein_coding protein_coding MGP_AJ_T0064164.1 MGP_AJ_G0027909.1 mouse_genomes_project 3 142753263 142784756 - MGP_AJ_P0064164 Sh3glb1 protein_coding protein_coding MGP_AJ_T0064165.1 MGP_AJ_G0027909.1 mouse_genomes_project 3 142755765 142784626 - MGP_AJ_P0064165 Sh3glb1 protein_coding protein_coding MGP_AJ_T0064166.1 MGP_AJ_G0027909.1 mouse_genomes_project 3 142756397 142771054 - MGP_AJ_P0064166 Sh3glb1 protein_coding protein_coding MGP_AJ_T0061174.1 MGP_AJ_G0027250.1 mouse_genomes_project 3 66059456 66061806 - MGP_AJ_P0061174 Gm17641 protein_coding protein_coding MGP_AJ_T0102555.1 MGP_AJ_G0040297.1 mouse_genomes_project 3 91547462 91547896 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0014130.1 MGP_AJ_G0012225.1 mouse_genomes_project 3 74727625 74728896 - processed_pseudogene processed_pseudogene MGP_AJ_T0099854.1 MGP_AJ_G0037820.1 mouse_genomes_project 3 90478603 90478706 - Gm22577 snRNA snRNA MGP_AJ_T0099843.1 MGP_AJ_G0037809.1 mouse_genomes_project 3 83311199 83311310 + Gm23025 snRNA snRNA MGP_AJ_T0062598.1 MGP_AJ_G0027581.1 mouse_genomes_project 3 94320305 94324243 + MGP_AJ_P0062598 Txnip protein_coding protein_coding MGP_AJ_T0062599.1 MGP_AJ_G0027581.1 mouse_genomes_project 3 94320308 94324217 + MGP_AJ_P0062599 Txnip protein_coding protein_coding MGP_AJ_T0062600.1 MGP_AJ_G0027581.1 mouse_genomes_project 3 94321846 94322362 + Txnip protein_coding retained_intron MGP_AJ_T0062601.1 MGP_AJ_G0027581.1 mouse_genomes_project 3 94321859 94322553 + Txnip protein_coding processed_transcript MGP_AJ_T0062602.1 MGP_AJ_G0027581.1 mouse_genomes_project 3 94322071 94324218 + Txnip protein_coding processed_transcript MGP_AJ_T0062603.1 MGP_AJ_G0027581.1 mouse_genomes_project 3 94322402 94322923 + Txnip protein_coding retained_intron MGP_AJ_T0064178.1 MGP_AJ_G0027916.1 mouse_genomes_project 3 143181179 143210082 - MGP_AJ_P0064178 Clca2 protein_coding protein_coding MGP_AJ_T0064179.1 MGP_AJ_G0027916.1 mouse_genomes_project 3 143182673 143210084 - MGP_AJ_P0064179 Clca2 protein_coding protein_coding MGP_AJ_T0064180.1 MGP_AJ_G0027916.1 mouse_genomes_project 3 143209821 143210421 - Clca2 protein_coding processed_transcript MGP_AJ_T0062405.1 MGP_AJ_G0027538.1 mouse_genomes_project 3 92995839 93023867 - MGP_AJ_P0062405 Prune protein_coding protein_coding MGP_AJ_T0062406.1 MGP_AJ_G0027538.1 mouse_genomes_project 3 93007113 93010900 - Prune protein_coding retained_intron MGP_AJ_T0060997.1 MGP_AJ_G0027206.1 mouse_genomes_project 3 56277033 56288341 - MGP_AJ_P0060997 P2ry12 protein_coding protein_coding MGP_AJ_T0060998.1 MGP_AJ_G0027206.1 mouse_genomes_project 3 56277120 56323745 - MGP_AJ_P0060998 P2ry12 protein_coding protein_coding MGP_AJ_T0060999.1 MGP_AJ_G0027206.1 mouse_genomes_project 3 56277121 56281021 - MGP_AJ_P0060999 P2ry12 protein_coding protein_coding MGP_AJ_T0061000.1 MGP_AJ_G0027206.1 mouse_genomes_project 3 56277122 56323785 - MGP_AJ_P0061000 P2ry12 protein_coding protein_coding MGP_AJ_T0061001.1 MGP_AJ_G0027206.1 mouse_genomes_project 3 56278666 56280962 - MGP_AJ_P0061001 P2ry12 protein_coding protein_coding MGP_AJ_T0062174.1 MGP_AJ_G0027472.1 mouse_genomes_project 3 90146000 90147580 - MGP_AJ_P0062174 Lce6a protein_coding protein_coding MGP_AJ_T0062175.1 MGP_AJ_G0027472.1 mouse_genomes_project 3 90146004 90147100 - MGP_AJ_P0062175 Lce6a protein_coding protein_coding MGP_AJ_T0014256.1 MGP_AJ_G0012351.1 mouse_genomes_project 3 109815216 109815610 - processed_pseudogene processed_pseudogene MGP_AJ_T0014286.1 MGP_AJ_G0012381.1 mouse_genomes_project 3 119907382 119907788 - processed_pseudogene processed_pseudogene MGP_AJ_T0007795.1 MGP_AJ_G0006368.1 mouse_genomes_project 3 155959263 155965182 - Gm33466 lincRNA lincRNA MGP_AJ_T0001259.1 MGP_AJ_G0001183.1 mouse_genomes_project 3 86450278 86453019 + TEC TEC MGP_AJ_T0001229.1 MGP_AJ_G0001153.1 mouse_genomes_project 3 56720099 56722537 + TEC TEC MGP_AJ_T0063986.1 MGP_AJ_G0027872.1 mouse_genomes_project 3 135610015 135612593 - protein_coding lincRNA MGP_AJ_T0061147.1 MGP_AJ_G0027242.1 mouse_genomes_project 3 64622367 64668794 + MGP_AJ_P0061147 Gfm1 protein_coding protein_coding MGP_AJ_T0061148.1 MGP_AJ_G0027242.1 mouse_genomes_project 3 64622387 64651076 + Gfm1 protein_coding processed_transcript MGP_AJ_T0061149.1 MGP_AJ_G0027242.1 mouse_genomes_project 3 64622410 64650323 + MGP_AJ_P0061149 Gfm1 protein_coding unknown_likely_coding MGP_AJ_T0061150.1 MGP_AJ_G0027242.1 mouse_genomes_project 3 64648749 64667069 + Gfm1 protein_coding retained_intron MGP_AJ_T0014072.1 MGP_AJ_G0012167.1 mouse_genomes_project 3 57526571 57527307 - processed_pseudogene processed_pseudogene MGP_AJ_T0062624.1 MGP_AJ_G0027589.1 mouse_genomes_project 3 94412169 94431338 + MGP_AJ_P0062624 Itga10 protein_coding protein_coding MGP_AJ_T0062625.1 MGP_AJ_G0027589.1 mouse_genomes_project 3 94412169 94431332 + MGP_AJ_P0062625 Itga10 protein_coding protein_coding MGP_AJ_T0062626.1 MGP_AJ_G0027589.1 mouse_genomes_project 3 94424015 94429975 + Itga10 protein_coding retained_intron MGP_AJ_T0001170.1 MGP_AJ_G0001096.1 mouse_genomes_project 3 42287316 42289905 - TEC TEC MGP_AJ_T0098978.1 MGP_AJ_G0036955.1 mouse_genomes_project 3 100057178 100058494 + Gm43244 sense_intronic sense_intronic MGP_AJ_T0099888.1 MGP_AJ_G0037854.1 mouse_genomes_project 3 154026803 154026907 - Gm23038 snRNA snRNA MGP_AJ_T0013946.1 MGP_AJ_G0012041.1 mouse_genomes_project 3 15647484 15647885 + processed_pseudogene processed_pseudogene MGP_AJ_T0099848.1 MGP_AJ_G0037814.1 mouse_genomes_project 3 86337553 86337657 - Gm22935 snRNA snRNA MGP_AJ_T0102542.1 MGP_AJ_G0040284.1 mouse_genomes_project 3 78094336 78094798 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0013937.1 MGP_AJ_G0012032.1 mouse_genomes_project 3 11903562 11903781 - processed_pseudogene processed_pseudogene MGP_AJ_T0004332.1 MGP_AJ_G0003792.1 mouse_genomes_project 3 104963738 105121950 - Gm27008 antisense antisense MGP_AJ_T0004333.1 MGP_AJ_G0003792.1 mouse_genomes_project 3 104979177 105124121 - Gm27008 antisense antisense MGP_AJ_T0060640.1 MGP_AJ_G0027138.1 mouse_genomes_project 3 37723926 37741602 + MGP_AJ_P0060640 Slc25a31 protein_coding protein_coding MGP_AJ_T0014022.1 MGP_AJ_G0012117.1 mouse_genomes_project 3 42362212 42362462 - processed_pseudogene processed_pseudogene MGP_AJ_T0007651.1 MGP_AJ_G0006255.1 mouse_genomes_project 3 100305718 100307500 + Gm43242 lincRNA lincRNA MGP_AJ_T0099835.1 MGP_AJ_G0037801.1 mouse_genomes_project 3 63336918 63337071 - Gm26442 snRNA snRNA MGP_AJ_T0099861.1 MGP_AJ_G0037827.1 mouse_genomes_project 3 94932355 94932465 - Gm24435 snRNA snRNA MGP_AJ_T0102013.1 MGP_AJ_G0039823.1 mouse_genomes_project 3 125520137 125521903 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_AJ_T0017985.1 MGP_AJ_G0015495.1 mouse_genomes_project 3 106437930 106443237 - Gm12522 processed_transcript processed_transcript MGP_AJ_T0063762.1 MGP_AJ_G0027831.1 mouse_genomes_project 3 127874822 127892075 - Rrh protein_coding processed_transcript MGP_AJ_T0063763.1 MGP_AJ_G0027831.1 mouse_genomes_project 3 127879063 127892087 - MGP_AJ_P0063763 Rrh protein_coding protein_coding MGP_AJ_T0063764.1 MGP_AJ_G0027831.1 mouse_genomes_project 3 127879066 127892073 - MGP_AJ_P0063764 Rrh protein_coding protein_coding MGP_AJ_T0063765.1 MGP_AJ_G0027831.1 mouse_genomes_project 3 127879292 127892169 - MGP_AJ_P0063765 Rrh protein_coding protein_coding MGP_AJ_T0063766.1 MGP_AJ_G0027831.1 mouse_genomes_project 3 127879400 127892044 - MGP_AJ_P0063766 Rrh protein_coding nonsense_mediated_decay MGP_AJ_T0063767.1 MGP_AJ_G0027831.1 mouse_genomes_project 3 127885153 127892076 - Rrh protein_coding processed_transcript MGP_AJ_T0063768.1 MGP_AJ_G0027831.1 mouse_genomes_project 3 127889049 127892040 - Rrh protein_coding retained_intron MGP_AJ_T0014233.1 MGP_AJ_G0012328.1 mouse_genomes_project 3 102857481 102857736 - processed_pseudogene processed_pseudogene MGP_AJ_T0010560.1 MGP_AJ_G0008682.1 mouse_genomes_project 3 138036777 138036899 + Mir7j miRNA miRNA MGP_AJ_T0063846.1 MGP_AJ_G0027849.1 mouse_genomes_project 3 130627976 130643284 + MGP_AJ_P0063846 Gimd1 protein_coding protein_coding MGP_AJ_T0063847.1 MGP_AJ_G0027849.1 mouse_genomes_project 3 130632510 130642565 + MGP_AJ_P0063847 Gimd1 protein_coding protein_coding MGP_AJ_T0064296.1 MGP_AJ_G0027940.1 mouse_genomes_project 3 146946121 146959118 - MGP_AJ_P0064296 Adgrl2 protein_coding protein_coding MGP_AJ_T0064297.1 MGP_AJ_G0027940.1 mouse_genomes_project 3 146946124 147085999 - MGP_AJ_P0064297 Adgrl2 protein_coding protein_coding MGP_AJ_T0064298.1 MGP_AJ_G0027940.1 mouse_genomes_project 3 146946389 146990869 - MGP_AJ_P0064298 Adgrl2 protein_coding protein_coding MGP_AJ_T0064299.1 MGP_AJ_G0027940.1 mouse_genomes_project 3 146946393 146953516 - MGP_AJ_P0064299 Adgrl2 protein_coding protein_coding MGP_AJ_T0064300.1 MGP_AJ_G0027940.1 mouse_genomes_project 3 146946609 147085890 - MGP_AJ_P0064300 Adgrl2 protein_coding protein_coding MGP_AJ_T0064301.1 MGP_AJ_G0027940.1 mouse_genomes_project 3 146946626 147121780 - MGP_AJ_P0064301 Adgrl2 protein_coding protein_coding MGP_AJ_T0064302.1 MGP_AJ_G0027940.1 mouse_genomes_project 3 146946626 147121780 - MGP_AJ_P0064302 Adgrl2 protein_coding protein_coding MGP_AJ_T0064303.1 MGP_AJ_G0027940.1 mouse_genomes_project 3 146947473 147086006 - MGP_AJ_P0064303 Adgrl2 protein_coding protein_coding MGP_AJ_T0064304.1 MGP_AJ_G0027940.1 mouse_genomes_project 3 146947626 147086019 - MGP_AJ_P0064304 Adgrl2 protein_coding protein_coding MGP_AJ_T0064305.1 MGP_AJ_G0027940.1 mouse_genomes_project 3 146947626 147086019 - MGP_AJ_P0064305 Adgrl2 protein_coding protein_coding MGP_AJ_T0064306.1 MGP_AJ_G0027940.1 mouse_genomes_project 3 146947626 147086019 - MGP_AJ_P0064306 Adgrl2 protein_coding protein_coding MGP_AJ_T0064307.1 MGP_AJ_G0027940.1 mouse_genomes_project 3 146947626 147086019 - MGP_AJ_P0064307 Adgrl2 protein_coding protein_coding MGP_AJ_T0064308.1 MGP_AJ_G0027940.1 mouse_genomes_project 3 146948255 146964495 - MGP_AJ_P0064308 Adgrl2 protein_coding protein_coding MGP_AJ_T0064309.1 MGP_AJ_G0027940.1 mouse_genomes_project 3 146948278 146965954 - MGP_AJ_P0064309 Adgrl2 protein_coding protein_coding MGP_AJ_T0064310.1 MGP_AJ_G0027940.1 mouse_genomes_project 3 146948297 146956933 - MGP_AJ_P0064310 Adgrl2 protein_coding protein_coding MGP_AJ_T0064311.1 MGP_AJ_G0027940.1 mouse_genomes_project 3 146950856 146955711 - Adgrl2 protein_coding retained_intron MGP_AJ_T0064312.1 MGP_AJ_G0027940.1 mouse_genomes_project 3 146957708 146966088 - Adgrl2 protein_coding retained_intron MGP_AJ_T0064313.1 MGP_AJ_G0027940.1 mouse_genomes_project 3 146991679 147085867 - MGP_AJ_P0064313 Adgrl2 protein_coding unknown_likely_coding MGP_AJ_T0064314.1 MGP_AJ_G0027940.1 mouse_genomes_project 3 147019653 147120541 - Adgrl2 protein_coding retained_intron MGP_AJ_T0064315.1 MGP_AJ_G0027940.1 mouse_genomes_project 3 147085191 147120707 - Adgrl2 protein_coding retained_intron MGP_AJ_T0061939.1 MGP_AJ_G0027407.1 mouse_genomes_project 3 86770794 86920487 + MGP_AJ_P0061939 Kcnn3 protein_coding protein_coding MGP_AJ_T0061940.1 MGP_AJ_G0027407.1 mouse_genomes_project 3 86915243 86927891 + Kcnn3 protein_coding retained_intron MGP_AJ_T0060298.1 MGP_AJ_G0027077.1 mouse_genomes_project 3 25902744 25920677 + MGP_AJ_P0060298 Eif5a2 protein_coding protein_coding MGP_AJ_T0007733.1 MGP_AJ_G0006323.1 mouse_genomes_project 3 137788407 137792061 - Gm32693 lincRNA lincRNA MGP_AJ_T0014328.1 MGP_AJ_G0012423.1 mouse_genomes_project 3 133191048 133191724 + processed_pseudogene processed_pseudogene MGP_AJ_T0014008.1 MGP_AJ_G0012103.1 mouse_genomes_project 3 36346285 36346571 - processed_pseudogene processed_pseudogene MGP_AJ_T0102543.1 MGP_AJ_G0040285.1 mouse_genomes_project 3 80922124 80942558 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0063153.1 MGP_AJ_G0027715.1 mouse_genomes_project 3 105792076 105811498 - MGP_AJ_P0063153 Csf1 protein_coding protein_coding MGP_AJ_T0063154.1 MGP_AJ_G0027715.1 mouse_genomes_project 3 105792076 105811265 - MGP_AJ_P0063154 Csf1 protein_coding protein_coding MGP_AJ_T0063155.1 MGP_AJ_G0027715.1 mouse_genomes_project 3 105794042 105802008 - MGP_AJ_P0063155 Csf1 protein_coding protein_coding MGP_AJ_T0063156.1 MGP_AJ_G0027715.1 mouse_genomes_project 3 105796623 105811271 - MGP_AJ_P0063156 Csf1 protein_coding protein_coding MGP_AJ_T0063157.1 MGP_AJ_G0027715.1 mouse_genomes_project 3 105798761 105811271 - Csf1 protein_coding retained_intron MGP_AJ_T0063158.1 MGP_AJ_G0027715.1 mouse_genomes_project 3 105799570 105801770 - MGP_AJ_P0063158 Csf1 protein_coding protein_coding MGP_AJ_T0063159.1 MGP_AJ_G0027715.1 mouse_genomes_project 3 105801408 105811250 - MGP_AJ_P0063159 Csf1 protein_coding protein_coding MGP_AJ_T0062931.1 MGP_AJ_G0027659.1 mouse_genomes_project 3 101752898 101765992 + MGP_AJ_P0062931 protein_coding protein_coding MGP_AJ_T0062933.1 MGP_AJ_G0027659.1 mouse_genomes_project 3 101752971 101765797 + MGP_AJ_P0062933 protein_coding protein_coding MGP_AJ_T0062934.1 MGP_AJ_G0027659.1 mouse_genomes_project 3 101752978 101765992 + MGP_AJ_P0062934 protein_coding protein_coding MGP_AJ_T0062935.1 MGP_AJ_G0027659.1 mouse_genomes_project 3 101753006 101765994 + MGP_AJ_P0062935 protein_coding protein_coding MGP_AJ_T0062936.1 MGP_AJ_G0027659.1 mouse_genomes_project 3 101753214 101765730 + MGP_AJ_P0062936 protein_coding protein_coding MGP_AJ_T0062937.1 MGP_AJ_G0027659.1 mouse_genomes_project 3 101753242 101758266 + protein_coding processed_transcript MGP_AJ_T0062938.1 MGP_AJ_G0027659.1 mouse_genomes_project 3 101758455 101764653 + MGP_AJ_P0062938 protein_coding nonsense_mediated_decay MGP_AJ_T0001223.1 MGP_AJ_G0001147.1 mouse_genomes_project 3 54685088 54689039 - TEC TEC MGP_AJ_T0007636.1 MGP_AJ_G0006242.1 mouse_genomes_project 3 94180334 94181199 - 4930477E14Rik lincRNA lincRNA MGP_AJ_T0007589.1 MGP_AJ_G0006209.1 mouse_genomes_project 3 77382142 77432428 - Gm37971 lincRNA lincRNA MGP_AJ_T0017986.1 MGP_AJ_G0015496.1 mouse_genomes_project 3 107196851 107199214 - Gm43223 processed_transcript lincRNA MGP_AJ_T0017987.1 MGP_AJ_G0015496.1 mouse_genomes_project 3 107196860 107198992 - Gm43223 processed_transcript processed_transcript MGP_AJ_T0102531.1 MGP_AJ_G0040273.1 mouse_genomes_project 3 56579073 56579310 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0064109.1 MGP_AJ_G0027899.1 mouse_genomes_project 3 140559725 140577306 + MGP_AJ_P0064109 Gbp7 protein_coding protein_coding MGP_AJ_T0064110.1 MGP_AJ_G0027899.1 mouse_genomes_project 3 140559725 140580403 + MGP_AJ_P0064110 Gbp7 protein_coding protein_coding MGP_AJ_T0014183.1 MGP_AJ_G0012278.1 mouse_genomes_project 3 91078579 91079067 - processed_pseudogene processed_pseudogene MGP_AJ_T0099810.1 MGP_AJ_G0037776.1 mouse_genomes_project 3 15277219 15277383 - Gm23686 snRNA snRNA MGP_AJ_T0007716.1 MGP_AJ_G0006307.1 mouse_genomes_project 3 131635443 131656703 - Gm42563 lincRNA lincRNA MGP_AJ_T0001319.1 MGP_AJ_G0001243.1 mouse_genomes_project 3 124459962 124464775 + TEC TEC MGP_AJ_T0099883.1 MGP_AJ_G0037849.1 mouse_genomes_project 3 140815336 140815441 - Gm24457 snRNA snRNA MGP_AJ_T0062716.1 MGP_AJ_G0027608.1 mouse_genomes_project 3 95703747 95725835 + MGP_AJ_P0062716 Sec22b protein_coding protein_coding MGP_AJ_T0062717.1 MGP_AJ_G0027608.1 mouse_genomes_project 3 95703773 95724410 + MGP_AJ_P0062717 Sec22b protein_coding nonsense_mediated_decay MGP_AJ_T0062718.1 MGP_AJ_G0027608.1 mouse_genomes_project 3 95703782 95710222 + MGP_AJ_P0062718 Sec22b protein_coding protein_coding MGP_AJ_T0062719.1 MGP_AJ_G0027608.1 mouse_genomes_project 3 95703784 95717769 + MGP_AJ_P0062719 Sec22b protein_coding protein_coding MGP_AJ_T0062720.1 MGP_AJ_G0027608.1 mouse_genomes_project 3 95709511 95710222 + Sec22b protein_coding processed_transcript MGP_AJ_T0061958.1 MGP_AJ_G0027413.1 mouse_genomes_project 3 87205969 87227274 - MGP_AJ_P0061958 Atp8b2 protein_coding protein_coding MGP_AJ_T0061959.1 MGP_AJ_G0027413.1 mouse_genomes_project 3 87205969 87230153 - MGP_AJ_P0061959 Atp8b2 protein_coding protein_coding MGP_AJ_T0061960.1 MGP_AJ_G0027413.1 mouse_genomes_project 3 87205977 87220010 - Atp8b2 protein_coding retained_intron MGP_AJ_T0061961.1 MGP_AJ_G0027413.1 mouse_genomes_project 3 87206644 87229924 - Atp8b2 protein_coding retained_intron MGP_AJ_T0061962.1 MGP_AJ_G0027413.1 mouse_genomes_project 3 87207337 87230153 - MGP_AJ_P0061962 Atp8b2 protein_coding protein_coding MGP_AJ_T0061963.1 MGP_AJ_G0027413.1 mouse_genomes_project 3 87207685 87210246 - MGP_AJ_P0061963 Atp8b2 protein_coding protein_coding MGP_AJ_T0061964.1 MGP_AJ_G0027413.1 mouse_genomes_project 3 87210202 87212252 - Atp8b2 protein_coding retained_intron MGP_AJ_T0061965.1 MGP_AJ_G0027413.1 mouse_genomes_project 3 87211676 87212961 - MGP_AJ_P0061965 Atp8b2 protein_coding protein_coding MGP_AJ_T0061966.1 MGP_AJ_G0027413.1 mouse_genomes_project 3 87212528 87213044 - Atp8b2 protein_coding retained_intron MGP_AJ_T0061967.1 MGP_AJ_G0027413.1 mouse_genomes_project 3 87212924 87213840 - Atp8b2 protein_coding retained_intron MGP_AJ_T0061968.1 MGP_AJ_G0027413.1 mouse_genomes_project 3 87212951 87214928 - MGP_AJ_P0061968 Atp8b2 protein_coding nonsense_mediated_decay MGP_AJ_T0061969.1 MGP_AJ_G0027413.1 mouse_genomes_project 3 87213015 87215058 - Atp8b2 protein_coding retained_intron MGP_AJ_T0061970.1 MGP_AJ_G0027413.1 mouse_genomes_project 3 87215070 87216979 - Atp8b2 protein_coding retained_intron MGP_AJ_T0061971.1 MGP_AJ_G0027413.1 mouse_genomes_project 3 87220483 87221284 - Atp8b2 protein_coding retained_intron MGP_AJ_T0061972.1 MGP_AJ_G0027413.1 mouse_genomes_project 3 87220914 87226199 - MGP_AJ_P0061972 Atp8b2 protein_coding protein_coding MGP_AJ_T0061973.1 MGP_AJ_G0027413.1 mouse_genomes_project 3 87224651 87229759 - MGP_AJ_P0061973 Atp8b2 protein_coding protein_coding MGP_AJ_T0061974.1 MGP_AJ_G0027413.1 mouse_genomes_project 3 87225198 87228460 - MGP_AJ_P0061974 Atp8b2 protein_coding protein_coding MGP_AJ_T0014121.1 MGP_AJ_G0012216.1 mouse_genomes_project 3 69806785 69807299 - processed_pseudogene processed_pseudogene MGP_AJ_T0001193.1 MGP_AJ_G0001119.1 mouse_genomes_project 3 48709787 48711224 + TEC TEC MGP_AJ_T0001194.1 MGP_AJ_G0001119.1 mouse_genomes_project 3 48709842 48711224 + TEC TEC MGP_AJ_T0064172.1 MGP_AJ_G0027912.1 mouse_genomes_project 3 142935063 142977180 - MGP_AJ_P0064172 Clca3b protein_coding protein_coding MGP_AJ_T0063615.1 MGP_AJ_G0027808.1 mouse_genomes_project 3 121468069 121486208 - MGP_AJ_P0063615 Mettl14 protein_coding protein_coding MGP_AJ_T0063616.1 MGP_AJ_G0027808.1 mouse_genomes_project 3 121468075 121486312 - MGP_AJ_P0063616 Mettl14 protein_coding protein_coding MGP_AJ_T0063617.1 MGP_AJ_G0027808.1 mouse_genomes_project 3 121469280 121475235 - MGP_AJ_P0063617 Mettl14 protein_coding protein_coding MGP_AJ_T0063618.1 MGP_AJ_G0027808.1 mouse_genomes_project 3 121486097 121486479 - Mettl14 protein_coding retained_intron MGP_AJ_T0014081.1 MGP_AJ_G0012176.1 mouse_genomes_project 3 60342121 60342740 - processed_pseudogene processed_pseudogene MGP_AJ_T0060308.1 MGP_AJ_G0027079.1 mouse_genomes_project 3 26221670 26287899 + MGP_AJ_P0060308 Egfem1 protein_coding protein_coding MGP_AJ_T0060309.1 MGP_AJ_G0027079.1 mouse_genomes_project 3 26221947 26714506 + MGP_AJ_P0060309 Egfem1 protein_coding protein_coding MGP_AJ_T0060310.1 MGP_AJ_G0027079.1 mouse_genomes_project 3 26222210 26809974 + Egfem1 protein_coding retained_intron MGP_AJ_T0060311.1 MGP_AJ_G0027079.1 mouse_genomes_project 3 26222366 26827298 + MGP_AJ_P0060311 Egfem1 protein_coding protein_coding MGP_AJ_T0060312.1 MGP_AJ_G0027079.1 mouse_genomes_project 3 26222404 26826599 + MGP_AJ_P0060312 Egfem1 protein_coding protein_coding MGP_AJ_T0060313.1 MGP_AJ_G0027079.1 mouse_genomes_project 3 26600549 26781746 + Egfem1 protein_coding processed_transcript MGP_AJ_T0060314.1 MGP_AJ_G0027079.1 mouse_genomes_project 3 26650932 26827137 + MGP_AJ_P0060314 Egfem1 protein_coding unknown_likely_coding MGP_AJ_T0060315.1 MGP_AJ_G0027079.1 mouse_genomes_project 3 26650957 26809081 + MGP_AJ_P0060315 Egfem1 protein_coding protein_coding MGP_AJ_T0101147.1 MGP_AJ_G0039113.1 mouse_genomes_project 3 94495272 94495408 - Gm22581 snoRNA snoRNA MGP_AJ_T0062758.1 MGP_AJ_G0027623.1 mouse_genomes_project 3 97780133 97852175 + Spag17 protein_coding processed_transcript MGP_AJ_T0062759.1 MGP_AJ_G0027623.1 mouse_genomes_project 3 97780144 98042412 + MGP_AJ_P0062759 Spag17 protein_coding protein_coding MGP_AJ_T0062760.1 MGP_AJ_G0027623.1 mouse_genomes_project 3 97912924 97919885 + Spag17 protein_coding retained_intron MGP_AJ_T0062761.1 MGP_AJ_G0027623.1 mouse_genomes_project 3 97919828 97933034 + Spag17 protein_coding retained_intron MGP_AJ_T0062706.1 MGP_AJ_G0027606.1 mouse_genomes_project 3 95472210 95473874 - MGP_AJ_P0062706 Gm17651 protein_coding protein_coding MGP_AJ_T0014364.1 MGP_AJ_G0012459.1 mouse_genomes_project 3 142957901 142958538 + processed_pseudogene processed_pseudogene MGP_AJ_T0062149.1 MGP_AJ_G0027451.1 mouse_genomes_project 3 89604725 89612468 - MGP_AJ_P0062149 Lelp1 protein_coding protein_coding MGP_AJ_T0064251.1 MGP_AJ_G0027931.1 mouse_genomes_project 3 144586037 144599775 - MGP_AJ_P0064251 Spata1 protein_coding protein_coding MGP_AJ_T0064252.1 MGP_AJ_G0027931.1 mouse_genomes_project 3 144586043 144622181 - MGP_AJ_P0064252 Spata1 protein_coding protein_coding MGP_AJ_T0064253.1 MGP_AJ_G0027931.1 mouse_genomes_project 3 144586044 144628087 - MGP_AJ_P0064253 Spata1 protein_coding protein_coding MGP_AJ_T0064254.1 MGP_AJ_G0027931.1 mouse_genomes_project 3 144595984 144606529 - MGP_AJ_P0064254 Spata1 protein_coding protein_coding MGP_AJ_T0064255.1 MGP_AJ_G0027931.1 mouse_genomes_project 3 144599661 144612083 - Spata1 protein_coding processed_transcript MGP_AJ_T0064256.1 MGP_AJ_G0027931.1 mouse_genomes_project 3 144605616 144628043 - Spata1 protein_coding processed_transcript MGP_AJ_T0064257.1 MGP_AJ_G0027931.1 mouse_genomes_project 3 144613972 144623451 - MGP_AJ_P0064257 Spata1 protein_coding protein_coding MGP_AJ_T0007555.1 MGP_AJ_G0006184.1 mouse_genomes_project 3 51684965 51688154 + Gm26678 lincRNA lincRNA MGP_AJ_T0061763.1 MGP_AJ_G0027377.1 mouse_genomes_project 3 86320239 86340738 - MGP_AJ_P0061763 Gm43738 protein_coding protein_coding MGP_AJ_T0001295.1 MGP_AJ_G0001219.1 mouse_genomes_project 3 114994848 114998820 - TEC TEC MGP_AJ_T0062583.1 MGP_AJ_G0027568.1 mouse_genomes_project 3 93980776 93981220 + MGP_AJ_P0062583 Hist2h2ab protein_coding protein_coding MGP_AJ_T0014315.1 MGP_AJ_G0012410.1 mouse_genomes_project 3 129353484 129354502 - processed_pseudogene processed_pseudogene MGP_AJ_T0014251.1 MGP_AJ_G0012346.1 mouse_genomes_project 3 108330281 108330618 - processed_pseudogene processed_pseudogene MGP_AJ_T0060978.1 MGP_AJ_G0027201.1 mouse_genomes_project 3 56066950 56155630 + MGP_AJ_P0060978 Med12l protein_coding protein_coding MGP_AJ_T0060979.1 MGP_AJ_G0027201.1 mouse_genomes_project 3 56067612 56370820 + MGP_AJ_P0060979 Med12l protein_coding protein_coding MGP_AJ_T0060980.1 MGP_AJ_G0027201.1 mouse_genomes_project 3 56068103 56370548 + MGP_AJ_P0060980 Med12l protein_coding protein_coding MGP_AJ_T0060981.1 MGP_AJ_G0027201.1 mouse_genomes_project 3 56068103 56370548 + MGP_AJ_P0060981 Med12l protein_coding protein_coding MGP_AJ_T0060982.1 MGP_AJ_G0027201.1 mouse_genomes_project 3 56068103 56154530 + MGP_AJ_P0060982 Med12l protein_coding protein_coding MGP_AJ_T0061002.1 MGP_AJ_G0027201.1 mouse_genomes_project 3 56317958 56368040 + MGP_AJ_P0061002 Med12l protein_coding nonsense_mediated_decay MGP_AJ_T0062787.1 MGP_AJ_G0027630.1 mouse_genomes_project 3 98860515 98891211 - MGP_AJ_P0062787 Ttf2 protein_coding protein_coding MGP_AJ_T0062788.1 MGP_AJ_G0027630.1 mouse_genomes_project 3 98863503 98868006 - Ttf2 protein_coding retained_intron MGP_AJ_T0062789.1 MGP_AJ_G0027630.1 mouse_genomes_project 3 98867998 98891211 - Ttf2 protein_coding retained_intron MGP_AJ_T0062790.1 MGP_AJ_G0027630.1 mouse_genomes_project 3 98869111 98874137 - MGP_AJ_P0062790 Ttf2 protein_coding protein_coding MGP_AJ_T0062791.1 MGP_AJ_G0027630.1 mouse_genomes_project 3 98880294 98881530 - Ttf2 protein_coding retained_intron MGP_AJ_T0061445.1 MGP_AJ_G0027317.1 mouse_genomes_project 3 83260826 83265496 - MGP_AJ_P0061445 Rps3a1 protein_coding protein_coding MGP_AJ_T0007667.1 MGP_AJ_G0006268.1 mouse_genomes_project 3 106225362 106246427 + Gm12524 lincRNA lincRNA MGP_AJ_T0060268.1 MGP_AJ_G0027074.1 mouse_genomes_project 3 25089953 25097608 + Pld1 protein_coding processed_transcript MGP_AJ_T0060269.1 MGP_AJ_G0027074.1 mouse_genomes_project 3 25089954 25173329 + MGP_AJ_P0060269 Pld1 protein_coding protein_coding MGP_AJ_T0060270.1 MGP_AJ_G0027074.1 mouse_genomes_project 3 25126833 25267173 + MGP_AJ_P0060270 Pld1 protein_coding protein_coding MGP_AJ_T0060271.1 MGP_AJ_G0027074.1 mouse_genomes_project 3 25163531 25268361 + MGP_AJ_P0060271 Pld1 protein_coding protein_coding MGP_AJ_T0060272.1 MGP_AJ_G0027074.1 mouse_genomes_project 3 25175900 25268485 + MGP_AJ_P0060272 Pld1 protein_coding protein_coding MGP_AJ_T0060273.1 MGP_AJ_G0027074.1 mouse_genomes_project 3 25185863 25193386 + Pld1 protein_coding processed_transcript MGP_AJ_T0060274.1 MGP_AJ_G0027074.1 mouse_genomes_project 3 25208318 25223000 + Pld1 protein_coding retained_intron MGP_AJ_T0060275.1 MGP_AJ_G0027074.1 mouse_genomes_project 3 25215495 25218808 + Pld1 protein_coding retained_intron MGP_AJ_T0060276.1 MGP_AJ_G0027074.1 mouse_genomes_project 3 25245987 25265918 + MGP_AJ_P0060276 Pld1 protein_coding protein_coding MGP_AJ_T0007451.1 MGP_AJ_G0006107.1 mouse_genomes_project 3 5718537 5723695 + Gm32496 lincRNA lincRNA MGP_AJ_T0004374.1 MGP_AJ_G0003816.1 mouse_genomes_project 3 127797382 127808723 + Gm42697 antisense antisense MGP_AJ_T0061109.1 MGP_AJ_G0027235.1 mouse_genomes_project 3 63195466 63207515 - Ccnl1 protein_coding retained_intron MGP_AJ_T0061110.1 MGP_AJ_G0027235.1 mouse_genomes_project 3 63195466 63207565 - MGP_AJ_P0061110 Ccnl1 protein_coding protein_coding MGP_AJ_T0061111.1 MGP_AJ_G0027235.1 mouse_genomes_project 3 63195510 63207348 - MGP_AJ_P0061111 Ccnl1 protein_coding nonsense_mediated_decay MGP_AJ_T0061112.1 MGP_AJ_G0027235.1 mouse_genomes_project 3 63195824 63207479 - Ccnl1 protein_coding retained_intron MGP_AJ_T0061113.1 MGP_AJ_G0027235.1 mouse_genomes_project 3 63196097 63197314 - Ccnl1 protein_coding retained_intron MGP_AJ_T0061114.1 MGP_AJ_G0027235.1 mouse_genomes_project 3 63197269 63206172 - MGP_AJ_P0061114 Ccnl1 protein_coding nonsense_mediated_decay MGP_AJ_T0061115.1 MGP_AJ_G0027235.1 mouse_genomes_project 3 63197823 63200294 - Ccnl1 protein_coding retained_intron MGP_AJ_T0061116.1 MGP_AJ_G0027235.1 mouse_genomes_project 3 63198207 63207497 - Ccnl1 protein_coding retained_intron MGP_AJ_T0061117.1 MGP_AJ_G0027235.1 mouse_genomes_project 3 63199216 63206205 - MGP_AJ_P0061117 Ccnl1 protein_coding nonsense_mediated_decay MGP_AJ_T0061118.1 MGP_AJ_G0027235.1 mouse_genomes_project 3 63199722 63201184 - Ccnl1 protein_coding retained_intron MGP_AJ_T0061119.1 MGP_AJ_G0027235.1 mouse_genomes_project 3 63200564 63202309 - Ccnl1 protein_coding retained_intron MGP_AJ_T0061120.1 MGP_AJ_G0027235.1 mouse_genomes_project 3 63200749 63206969 - Ccnl1 protein_coding retained_intron MGP_AJ_T0061121.1 MGP_AJ_G0027235.1 mouse_genomes_project 3 63204561 63207444 - MGP_AJ_P0061121 Ccnl1 protein_coding unknown_likely_coding MGP_AJ_T0101118.1 MGP_AJ_G0039084.1 mouse_genomes_project 3 44256099 44256237 + Gm23891 snoRNA snoRNA MGP_AJ_T0007671.1 MGP_AJ_G0006272.1 mouse_genomes_project 3 109883632 110087321 + lincRNA lincRNA MGP_AJ_T0063266.1 MGP_AJ_G0027742.1 mouse_genomes_project 3 106657464 106719069 + MGP_AJ_P0063266 Wdr47 protein_coding protein_coding MGP_AJ_T0063267.1 MGP_AJ_G0027742.1 mouse_genomes_project 3 106657537 106691819 + MGP_AJ_P0063267 Wdr47 protein_coding nonsense_mediated_decay MGP_AJ_T0063268.1 MGP_AJ_G0027742.1 mouse_genomes_project 3 106657574 106687521 + Wdr47 protein_coding retained_intron MGP_AJ_T0063269.1 MGP_AJ_G0027742.1 mouse_genomes_project 3 106692015 106697818 + Wdr47 protein_coding processed_transcript MGP_AJ_T0063270.1 MGP_AJ_G0027742.1 mouse_genomes_project 3 106692396 106700708 + Wdr47 protein_coding retained_intron MGP_AJ_T0063271.1 MGP_AJ_G0027742.1 mouse_genomes_project 3 106696511 106706293 + Wdr47 protein_coding processed_transcript MGP_AJ_T0063272.1 MGP_AJ_G0027742.1 mouse_genomes_project 3 106700356 106711079 + Wdr47 protein_coding retained_intron MGP_AJ_T0099842.1 MGP_AJ_G0037808.1 mouse_genomes_project 3 83082704 83082768 - Gm27811 snRNA snRNA MGP_AJ_T0063033.1 MGP_AJ_G0027682.1 mouse_genomes_project 3 103820004 103821734 + Tmigd3 protein_coding processed_transcript MGP_AJ_T0063034.1 MGP_AJ_G0027682.1 mouse_genomes_project 3 103820008 103873446 + MGP_AJ_P0063034 Tmigd3 protein_coding protein_coding MGP_AJ_T0063035.1 MGP_AJ_G0027682.1 mouse_genomes_project 3 103820008 103873365 + MGP_AJ_P0063035 Tmigd3 protein_coding nonsense_mediated_decay MGP_AJ_T0063036.1 MGP_AJ_G0027682.1 mouse_genomes_project 3 103820078 103820964 + Tmigd3 protein_coding processed_transcript MGP_AJ_T0063038.1 MGP_AJ_G0027682.1 mouse_genomes_project 3 103853749 103868115 + MGP_AJ_P0063038 Tmigd3 protein_coding nonsense_mediated_decay MGP_AJ_T0063040.1 MGP_AJ_G0027682.1 mouse_genomes_project 3 103863493 103873449 + MGP_AJ_P0063040 Tmigd3 protein_coding protein_coding MGP_AJ_T0063041.1 MGP_AJ_G0027682.1 mouse_genomes_project 3 103863493 103873452 + MGP_AJ_P0063041 Tmigd3 protein_coding protein_coding MGP_AJ_T0014336.1 MGP_AJ_G0012431.1 mouse_genomes_project 3 134398604 134398763 + processed_pseudogene processed_pseudogene MGP_AJ_T0007626.1 MGP_AJ_G0006233.1 mouse_genomes_project 3 92092904 92096428 - 1700040D17Rik lincRNA lincRNA MGP_AJ_T0007701.1 MGP_AJ_G0006294.1 mouse_genomes_project 3 126676502 126940314 + lincRNA lincRNA MGP_AJ_T0064431.1 MGP_AJ_G0027957.1 mouse_genomes_project 3 152073804 152123654 - MGP_AJ_P0064431 Msh4 protein_coding protein_coding MGP_AJ_T0064432.1 MGP_AJ_G0027957.1 mouse_genomes_project 3 152073924 152092608 - Msh4 protein_coding retained_intron MGP_AJ_T0064433.1 MGP_AJ_G0027957.1 mouse_genomes_project 3 152073924 152097794 - Msh4 protein_coding retained_intron MGP_AJ_T0064434.1 MGP_AJ_G0027957.1 mouse_genomes_project 3 152073924 152082200 - Msh4 protein_coding processed_transcript MGP_AJ_T0064435.1 MGP_AJ_G0027957.1 mouse_genomes_project 3 152073924 152097794 - Msh4 protein_coding retained_intron MGP_AJ_T0064436.1 MGP_AJ_G0027957.1 mouse_genomes_project 3 152073924 152082226 - Msh4 protein_coding retained_intron MGP_AJ_T0064437.1 MGP_AJ_G0027957.1 mouse_genomes_project 3 152073924 152122247 - MGP_AJ_P0064437 Msh4 protein_coding protein_coding MGP_AJ_T0064438.1 MGP_AJ_G0027957.1 mouse_genomes_project 3 152073928 152122407 - MGP_AJ_P0064438 Msh4 protein_coding protein_coding MGP_AJ_T0102551.1 MGP_AJ_G0040293.1 mouse_genomes_project 3 87759182 87761244 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0004314.1 MGP_AJ_G0003780.1 mouse_genomes_project 3 97124739 97131336 - Gm43120 antisense antisense MGP_AJ_T0007753.1 MGP_AJ_G0006339.1 mouse_genomes_project 3 141804686 141889205 + Gm42705 lincRNA lincRNA MGP_AJ_T0001280.1 MGP_AJ_G0001204.1 mouse_genomes_project 3 102648666 102653140 + TEC TEC MGP_AJ_T0004389.1 MGP_AJ_G0003827.1 mouse_genomes_project 3 136151747 136162751 + Gm43691 antisense antisense MGP_AJ_T0013933.1 MGP_AJ_G0012028.1 mouse_genomes_project 3 11499399 11499878 - processed_pseudogene processed_pseudogene MGP_AJ_T0063078.1 MGP_AJ_G0027694.1 mouse_genomes_project 3 104538053 104584026 - MGP_AJ_P0063078 Cept1 protein_coding protein_coding MGP_AJ_T0063079.1 MGP_AJ_G0027694.1 mouse_genomes_project 3 104538776 104583955 - MGP_AJ_P0063079 Cept1 protein_coding protein_coding MGP_AJ_T0063080.1 MGP_AJ_G0027694.1 mouse_genomes_project 3 104538776 104583806 - MGP_AJ_P0063080 Cept1 protein_coding protein_coding MGP_AJ_T0063081.1 MGP_AJ_G0027694.1 mouse_genomes_project 3 104541047 104583923 - MGP_AJ_P0063081 Cept1 protein_coding protein_coding MGP_AJ_T0063082.1 MGP_AJ_G0027694.1 mouse_genomes_project 3 104556150 104583967 - MGP_AJ_P0063082 Cept1 protein_coding protein_coding MGP_AJ_T0063083.1 MGP_AJ_G0027694.1 mouse_genomes_project 3 104567443 104583942 - MGP_AJ_P0063083 Cept1 protein_coding nonsense_mediated_decay MGP_AJ_T0063084.1 MGP_AJ_G0027694.1 mouse_genomes_project 3 104575560 104583816 - MGP_AJ_P0063084 Cept1 protein_coding protein_coding MGP_AJ_T0101113.1 MGP_AJ_G0039079.1 mouse_genomes_project 3 34949666 34949775 - Gm26404 snoRNA snoRNA MGP_AJ_T0007725.1 MGP_AJ_G0006315.1 mouse_genomes_project 3 135008392 135011700 - Gm43357 lincRNA lincRNA MGP_AJ_T0014167.1 MGP_AJ_G0012262.1 mouse_genomes_project 3 88059065 88059897 + processed_pseudogene processed_pseudogene MGP_AJ_T0014061.1 MGP_AJ_G0012156.1 mouse_genomes_project 3 55017056 55018235 + processed_pseudogene processed_pseudogene MGP_AJ_T0061227.1 MGP_AJ_G0027263.1 mouse_genomes_project 3 70239314 70248924 - MGP_AJ_P0061227 Slitrk3 protein_coding protein_coding MGP_AJ_T0061228.1 MGP_AJ_G0027263.1 mouse_genomes_project 3 70240179 70249784 - MGP_AJ_P0061228 Slitrk3 protein_coding protein_coding MGP_AJ_T0001123.1 MGP_AJ_G0001049.1 mouse_genomes_project 3 22214523 22214717 + TEC TEC MGP_AJ_T0001404.1 MGP_AJ_G0001327.1 mouse_genomes_project 3 158112204 158114545 + TEC TEC MGP_AJ_T0014083.1 MGP_AJ_G0012178.1 mouse_genomes_project 3 61006661 61007607 + processed_pseudogene processed_pseudogene MGP_AJ_T0063759.1 MGP_AJ_G0027830.1 mouse_genomes_project 3 127858354 127874445 - MGP_AJ_P0063759 Lrit3 protein_coding protein_coding MGP_AJ_T0063760.1 MGP_AJ_G0027830.1 mouse_genomes_project 3 127858764 127874445 - MGP_AJ_P0063760 Lrit3 protein_coding protein_coding MGP_AJ_T0063761.1 MGP_AJ_G0027830.1 mouse_genomes_project 3 127861369 127870936 - Lrit3 protein_coding retained_intron MGP_AJ_T0014102.1 MGP_AJ_G0012197.1 mouse_genomes_project 3 66037873 66039192 + processed_pseudogene processed_pseudogene MGP_AJ_T0010499.1 MGP_AJ_G0008621.1 mouse_genomes_project 3 24715134 24715230 - Mir3092 miRNA miRNA MGP_AJ_T0061838.1 MGP_AJ_G0027387.1 mouse_genomes_project 3 86455026 86472009 + MGP_AJ_P0061838 Thbs3 protein_coding protein_coding MGP_AJ_T0061839.1 MGP_AJ_G0027387.1 mouse_genomes_project 3 86455051 86459312 + MGP_AJ_P0061839 Thbs3 protein_coding protein_coding MGP_AJ_T0061840.1 MGP_AJ_G0027387.1 mouse_genomes_project 3 86455073 86472009 + Thbs3 protein_coding retained_intron MGP_AJ_T0061841.1 MGP_AJ_G0027387.1 mouse_genomes_project 3 86455079 86471976 + MGP_AJ_P0061841 Thbs3 protein_coding protein_coding MGP_AJ_T0061842.1 MGP_AJ_G0027387.1 mouse_genomes_project 3 86458645 86460316 + Thbs3 protein_coding retained_intron MGP_AJ_T0061843.1 MGP_AJ_G0027387.1 mouse_genomes_project 3 86462180 86468338 + Thbs3 protein_coding processed_transcript MGP_AJ_T0061845.1 MGP_AJ_G0027387.1 mouse_genomes_project 3 86469302 86470724 + Thbs3 protein_coding retained_intron MGP_AJ_T0061846.1 MGP_AJ_G0027387.1 mouse_genomes_project 3 86469451 86471875 + MGP_AJ_P0061846 Thbs3 protein_coding nonsense_mediated_decay MGP_AJ_T0061847.1 MGP_AJ_G0027387.1 mouse_genomes_project 3 86469492 86470592 + Thbs3 protein_coding retained_intron MGP_AJ_T0061848.1 MGP_AJ_G0027387.1 mouse_genomes_project 3 86470343 86471735 + Thbs3 protein_coding retained_intron MGP_AJ_T0061849.1 MGP_AJ_G0027387.1 mouse_genomes_project 3 86471421 86471958 + Thbs3 protein_coding retained_intron MGP_AJ_T0060772.1 MGP_AJ_G0027157.1 mouse_genomes_project 3 48428899 48486674 + Naa15 protein_coding processed_transcript MGP_AJ_T0060773.1 MGP_AJ_G0027157.1 mouse_genomes_project 3 48428926 48491092 + MGP_AJ_P0060773 Naa15 protein_coding protein_coding MGP_AJ_T0060774.1 MGP_AJ_G0027157.1 mouse_genomes_project 3 48429217 48457369 + MGP_AJ_P0060774 Naa15 protein_coding protein_coding MGP_AJ_T0060775.1 MGP_AJ_G0027157.1 mouse_genomes_project 3 48455422 48458397 + Naa15 protein_coding retained_intron MGP_AJ_T0060776.1 MGP_AJ_G0027157.1 mouse_genomes_project 3 48456411 48463067 + MGP_AJ_P0060776 Naa15 protein_coding protein_coding MGP_AJ_T0060777.1 MGP_AJ_G0027157.1 mouse_genomes_project 3 48474573 48478189 + Naa15 protein_coding retained_intron MGP_AJ_T0060778.1 MGP_AJ_G0027157.1 mouse_genomes_project 3 48475606 48477925 + Naa15 protein_coding retained_intron MGP_AJ_T0060779.1 MGP_AJ_G0027157.1 mouse_genomes_project 3 48484249 48487322 + Naa15 protein_coding retained_intron MGP_AJ_T0061374.1 MGP_AJ_G0027302.1 mouse_genomes_project 3 81012673 81154978 - MGP_AJ_P0061374 D930015E06Rik protein_coding protein_coding MGP_AJ_T0061375.1 MGP_AJ_G0027302.1 mouse_genomes_project 3 81013227 81154940 - MGP_AJ_P0061375 D930015E06Rik protein_coding protein_coding MGP_AJ_T0061376.1 MGP_AJ_G0027302.1 mouse_genomes_project 3 81013227 81154978 - MGP_AJ_P0061376 D930015E06Rik protein_coding protein_coding MGP_AJ_T0061377.1 MGP_AJ_G0027302.1 mouse_genomes_project 3 81013228 81025685 - D930015E06Rik protein_coding processed_transcript MGP_AJ_T0061378.1 MGP_AJ_G0027302.1 mouse_genomes_project 3 81016807 81024057 - D930015E06Rik protein_coding retained_intron MGP_AJ_T0061379.1 MGP_AJ_G0027302.1 mouse_genomes_project 3 81016821 81026011 - D930015E06Rik protein_coding retained_intron MGP_AJ_T0061380.1 MGP_AJ_G0027302.1 mouse_genomes_project 3 81037836 81083725 - D930015E06Rik protein_coding processed_transcript MGP_AJ_T0061381.1 MGP_AJ_G0027302.1 mouse_genomes_project 3 81056215 81059475 - D930015E06Rik protein_coding processed_transcript MGP_AJ_T0061382.1 MGP_AJ_G0027302.1 mouse_genomes_project 3 81145134 81154931 - D930015E06Rik protein_coding retained_intron MGP_AJ_T0061383.1 MGP_AJ_G0027302.1 mouse_genomes_project 3 81151980 81154964 - D930015E06Rik protein_coding retained_intron MGP_AJ_T0061384.1 MGP_AJ_G0027302.1 mouse_genomes_project 3 81152178 81154937 - D930015E06Rik protein_coding retained_intron MGP_AJ_T0014308.1 MGP_AJ_G0012403.1 mouse_genomes_project 3 127503199 127504242 + processed_pseudogene processed_pseudogene MGP_AJ_T0060834.1 MGP_AJ_G0027171.1 mouse_genomes_project 3 51403498 51433422 + MGP_AJ_P0060834 Postn protein_coding protein_coding MGP_AJ_T0060835.1 MGP_AJ_G0027171.1 mouse_genomes_project 3 51403498 51433425 + MGP_AJ_P0060835 Postn protein_coding protein_coding MGP_AJ_T0060836.1 MGP_AJ_G0027171.1 mouse_genomes_project 3 51403514 51433422 + MGP_AJ_P0060836 Postn protein_coding protein_coding MGP_AJ_T0060837.1 MGP_AJ_G0027171.1 mouse_genomes_project 3 51403532 51432840 + MGP_AJ_P0060837 Postn protein_coding protein_coding MGP_AJ_T0060838.1 MGP_AJ_G0027171.1 mouse_genomes_project 3 51419949 51433035 + MGP_AJ_P0060838 Postn protein_coding protein_coding MGP_AJ_T0060839.1 MGP_AJ_G0027171.1 mouse_genomes_project 3 51420873 51427100 + Postn protein_coding retained_intron MGP_AJ_T0060840.1 MGP_AJ_G0027171.1 mouse_genomes_project 3 51425496 51432875 + Postn protein_coding retained_intron MGP_AJ_T0060841.1 MGP_AJ_G0027171.1 mouse_genomes_project 3 51425498 51432970 + Postn protein_coding retained_intron MGP_AJ_T0060842.1 MGP_AJ_G0027171.1 mouse_genomes_project 3 51431276 51432781 + Postn protein_coding retained_intron MGP_AJ_T0014297.1 MGP_AJ_G0012392.1 mouse_genomes_project 3 122035543 122037319 - processed_pseudogene processed_pseudogene MGP_AJ_T0060242.1 MGP_AJ_G0027068.1 mouse_genomes_project 3 24226612 24282356 - MGP_AJ_P0060242 Ect2 protein_coding protein_coding MGP_AJ_T0060243.1 MGP_AJ_G0027068.1 mouse_genomes_project 3 24226612 24282373 - MGP_AJ_P0060243 Ect2 protein_coding protein_coding MGP_AJ_T0060244.1 MGP_AJ_G0027068.1 mouse_genomes_project 3 24226613 24282349 - MGP_AJ_P0060244 Ect2 protein_coding protein_coding MGP_AJ_T0060245.1 MGP_AJ_G0027068.1 mouse_genomes_project 3 24226616 24282345 - MGP_AJ_P0060245 Ect2 protein_coding nonsense_mediated_decay MGP_AJ_T0060246.1 MGP_AJ_G0027068.1 mouse_genomes_project 3 24227696 24246307 - MGP_AJ_P0060246 Ect2 protein_coding nonsense_mediated_decay MGP_AJ_T0060247.1 MGP_AJ_G0027068.1 mouse_genomes_project 3 24246351 24251188 - Ect2 protein_coding retained_intron MGP_AJ_T0060248.1 MGP_AJ_G0027068.1 mouse_genomes_project 3 24250373 24282307 - Ect2 protein_coding retained_intron MGP_AJ_T0060249.1 MGP_AJ_G0027068.1 mouse_genomes_project 3 24259932 24265459 - Ect2 protein_coding retained_intron MGP_AJ_T0060250.1 MGP_AJ_G0027068.1 mouse_genomes_project 3 24273235 24275500 - Ect2 protein_coding retained_intron MGP_AJ_T0060251.1 MGP_AJ_G0027068.1 mouse_genomes_project 3 24273305 24282349 - MGP_AJ_P0060251 Ect2 protein_coding protein_coding MGP_AJ_T0060252.1 MGP_AJ_G0027068.1 mouse_genomes_project 3 24274254 24282323 - MGP_AJ_P0060252 Ect2 protein_coding protein_coding MGP_AJ_T0060253.1 MGP_AJ_G0027068.1 mouse_genomes_project 3 24274270 24282305 - MGP_AJ_P0060253 Ect2 protein_coding protein_coding MGP_AJ_T0060254.1 MGP_AJ_G0027068.1 mouse_genomes_project 3 24274314 24282277 - MGP_AJ_P0060254 Ect2 protein_coding protein_coding MGP_AJ_T0014377.1 MGP_AJ_G0012472.1 mouse_genomes_project 3 151074439 151074606 - processed_pseudogene processed_pseudogene MGP_AJ_T0014366.1 MGP_AJ_G0012461.1 mouse_genomes_project 3 144693619 144694011 - processed_pseudogene processed_pseudogene MGP_AJ_T0060920.1 MGP_AJ_G0027186.1 mouse_genomes_project 3 52851757 52854249 + MGP_AJ_P0060920 Mab21l1 protein_coding protein_coding MGP_AJ_T0001151.1 MGP_AJ_G0001077.1 mouse_genomes_project 3 34382052 34382532 + TEC TEC MGP_AJ_T0101156.1 MGP_AJ_G0039122.1 mouse_genomes_project 3 112847052 112847184 - Gm23750 snoRNA snoRNA MGP_AJ_T0061099.1 MGP_AJ_G0027233.1 mouse_genomes_project 3 62770248 62797384 + MGP_AJ_P0061099 Tiparp protein_coding protein_coding MGP_AJ_T0061100.1 MGP_AJ_G0027233.1 mouse_genomes_project 3 62770298 62789445 + MGP_AJ_P0061100 Tiparp protein_coding protein_coding MGP_AJ_T0061101.1 MGP_AJ_G0027233.1 mouse_genomes_project 3 62787887 62794498 + Tiparp protein_coding processed_transcript MGP_AJ_T0007485.1 MGP_AJ_G0006128.1 mouse_genomes_project 3 19441517 19454574 - Gm38324 lincRNA lincRNA MGP_AJ_T0060085.1 MGP_AJ_G0027027.1 mouse_genomes_project 3 7331664 7336153 - MGP_AJ_P0060085 Fabp4 protein_coding protein_coding MGP_AJ_T0060086.1 MGP_AJ_G0027027.1 mouse_genomes_project 3 7331904 7336135 - Fabp4 protein_coding retained_intron MGP_AJ_T0010524.1 MGP_AJ_G0008646.1 mouse_genomes_project 3 85615317 85615390 - Mir7011 miRNA miRNA MGP_AJ_T0060956.1 MGP_AJ_G0027194.1 mouse_genomes_project 3 55473973 55526051 + MGP_AJ_P0060956 Tsc22d2 protein_coding protein_coding MGP_AJ_T0060957.1 MGP_AJ_G0027194.1 mouse_genomes_project 3 55473978 55520987 + MGP_AJ_P0060957 Tsc22d2 protein_coding protein_coding MGP_AJ_T0060958.1 MGP_AJ_G0027194.1 mouse_genomes_project 3 55475136 55478158 + Tsc22d2 protein_coding retained_intron MGP_AJ_T0060959.1 MGP_AJ_G0027194.1 mouse_genomes_project 3 55476742 55519576 + MGP_AJ_P0060959 Tsc22d2 protein_coding nonsense_mediated_decay MGP_AJ_T0063430.1 MGP_AJ_G0027773.1 mouse_genomes_project 3 114659934 114691572 - MGP_AJ_P0063430 Mfsd14a protein_coding protein_coding MGP_AJ_T0063431.1 MGP_AJ_G0027773.1 mouse_genomes_project 3 114661371 114665259 - Mfsd14a protein_coding retained_intron MGP_AJ_T0063432.1 MGP_AJ_G0027773.1 mouse_genomes_project 3 114670127 114674565 - Mfsd14a protein_coding retained_intron MGP_AJ_T0063434.1 MGP_AJ_G0027773.1 mouse_genomes_project 3 114676951 114691386 - Mfsd14a protein_coding retained_intron MGP_AJ_T0063435.1 MGP_AJ_G0027773.1 mouse_genomes_project 3 114679711 114691505 - Mfsd14a protein_coding retained_intron MGP_AJ_T0007747.1 MGP_AJ_G0006334.1 mouse_genomes_project 3 141633539 141635008 - Gm43616 lincRNA lincRNA MGP_AJ_T0064017.1 MGP_AJ_G0027880.1 mouse_genomes_project 3 136112384 136128889 + MGP_AJ_P0064017 1110002E22Rik protein_coding protein_coding MGP_AJ_T0064018.1 MGP_AJ_G0027880.1 mouse_genomes_project 3 136118960 136124743 + 1110002E22Rik protein_coding processed_transcript MGP_AJ_T0004258.1 MGP_AJ_G0003741.1 mouse_genomes_project 3 63075352 63119898 - Gm37359 antisense antisense MGP_AJ_T0062423.1 MGP_AJ_G0027541.1 mouse_genomes_project 3 93058140 93068634 + MGP_AJ_P0062423 Cers2 protein_coding protein_coding MGP_AJ_T0062424.1 MGP_AJ_G0027541.1 mouse_genomes_project 3 93058433 93070353 + MGP_AJ_P0062424 Cers2 protein_coding protein_coding MGP_AJ_T0062425.1 MGP_AJ_G0027541.1 mouse_genomes_project 3 93058596 93067527 + Cers2 protein_coding retained_intron MGP_AJ_T0062426.1 MGP_AJ_G0027541.1 mouse_genomes_project 3 93058616 93068077 + Cers2 protein_coding retained_intron MGP_AJ_T0062427.1 MGP_AJ_G0027541.1 mouse_genomes_project 3 93064103 93067304 + Cers2 protein_coding retained_intron MGP_AJ_T0062428.1 MGP_AJ_G0027541.1 mouse_genomes_project 3 93064774 93067796 + MGP_AJ_P0062428 Cers2 protein_coding protein_coding MGP_AJ_T0062429.1 MGP_AJ_G0027541.1 mouse_genomes_project 3 93065545 93068709 + MGP_AJ_P0062429 Cers2 protein_coding protein_coding MGP_AJ_T0062430.1 MGP_AJ_G0027541.1 mouse_genomes_project 3 93066886 93069426 + Cers2 protein_coding retained_intron MGP_AJ_T0062431.1 MGP_AJ_G0027541.1 mouse_genomes_project 3 93067693 93068711 + Cers2 protein_coding retained_intron MGP_AJ_T0063461.1 MGP_AJ_G0027779.1 mouse_genomes_project 3 115022790 115038649 + MGP_AJ_P0063461 4930455H04Rik protein_coding protein_coding MGP_AJ_T0060968.1 MGP_AJ_G0027197.1 mouse_genomes_project 3 55634263 55649226 + MGP_AJ_P0060968 Selt protein_coding unknown_likely_coding MGP_AJ_T0060969.1 MGP_AJ_G0027197.1 mouse_genomes_project 3 55634307 55645966 + Selt protein_coding retained_intron MGP_AJ_T0063723.1 MGP_AJ_G0027824.1 mouse_genomes_project 3 125851798 125882426 - MGP_AJ_P0063723 Ap1ar protein_coding protein_coding MGP_AJ_T0063724.1 MGP_AJ_G0027824.1 mouse_genomes_project 3 125851803 125882414 - MGP_AJ_P0063724 Ap1ar protein_coding protein_coding MGP_AJ_T0063725.1 MGP_AJ_G0027824.1 mouse_genomes_project 3 125852057 125853704 - Ap1ar protein_coding retained_intron MGP_AJ_T0063726.1 MGP_AJ_G0027824.1 mouse_genomes_project 3 125856979 125857614 - Ap1ar protein_coding retained_intron MGP_AJ_T0063727.1 MGP_AJ_G0027824.1 mouse_genomes_project 3 125858182 125862440 - Ap1ar protein_coding retained_intron MGP_AJ_T0063728.1 MGP_AJ_G0027824.1 mouse_genomes_project 3 125860466 125862129 - Ap1ar protein_coding retained_intron MGP_AJ_T0063729.1 MGP_AJ_G0027824.1 mouse_genomes_project 3 125864493 125870965 - Ap1ar protein_coding retained_intron MGP_AJ_T0063730.1 MGP_AJ_G0027824.1 mouse_genomes_project 3 125865550 125882134 - Ap1ar protein_coding retained_intron MGP_AJ_T0063731.1 MGP_AJ_G0027824.1 mouse_genomes_project 3 125865551 125868103 - Ap1ar protein_coding retained_intron MGP_AJ_T0063732.1 MGP_AJ_G0027824.1 mouse_genomes_project 3 125865586 125882159 - MGP_AJ_P0063732 Ap1ar protein_coding nonsense_mediated_decay MGP_AJ_T0063109.1 MGP_AJ_G0027700.1 mouse_genomes_project 3 105131385 105137975 + MGP_AJ_P0063109 Kcna2 protein_coding protein_coding MGP_AJ_T0063110.1 MGP_AJ_G0027700.1 mouse_genomes_project 3 105131806 105145339 + MGP_AJ_P0063110 Kcna2 protein_coding protein_coding MGP_AJ_T0063111.1 MGP_AJ_G0027700.1 mouse_genomes_project 3 105132921 105136211 + MGP_AJ_P0063111 Kcna2 protein_coding protein_coding MGP_AJ_T0004412.1 MGP_AJ_G0003844.1 mouse_genomes_project 3 152933406 152936099 - Gm20389 antisense antisense MGP_AJ_T0011549.1 MGP_AJ_G0009671.1 mouse_genomes_project 3 105461424 105461757 - Gm24383 misc_RNA misc_RNA MGP_AJ_T0013956.1 MGP_AJ_G0012051.1 mouse_genomes_project 3 17946094 17946304 - processed_pseudogene processed_pseudogene MGP_AJ_T0063557.1 MGP_AJ_G0027796.1 mouse_genomes_project 3 120361694 120372578 + MGP_AJ_P0063557 Dnttip2 protein_coding protein_coding MGP_AJ_T0063558.1 MGP_AJ_G0027796.1 mouse_genomes_project 3 120361724 120363517 + Dnttip2 protein_coding processed_transcript MGP_AJ_T0063559.1 MGP_AJ_G0027796.1 mouse_genomes_project 3 120363323 120372556 + Dnttip2 protein_coding processed_transcript MGP_AJ_T0063560.1 MGP_AJ_G0027796.1 mouse_genomes_project 3 120364079 120366920 + Dnttip2 protein_coding retained_intron MGP_AJ_T0063561.1 MGP_AJ_G0027796.1 mouse_genomes_project 3 120367884 120372405 + Dnttip2 protein_coding retained_intron MGP_AJ_T0064059.1 MGP_AJ_G0027890.1 mouse_genomes_project 3 136566599 136597119 + MGP_AJ_P0064059 Eif4e protein_coding protein_coding MGP_AJ_T0064060.1 MGP_AJ_G0027890.1 mouse_genomes_project 3 136567508 136598046 + MGP_AJ_P0064060 Eif4e protein_coding protein_coding MGP_AJ_T0064061.1 MGP_AJ_G0027890.1 mouse_genomes_project 3 136567519 136597506 + MGP_AJ_P0064061 Eif4e protein_coding protein_coding MGP_AJ_T0064062.1 MGP_AJ_G0027890.1 mouse_genomes_project 3 136576961 136597224 + MGP_AJ_P0064062 Eif4e protein_coding protein_coding MGP_AJ_T0064063.1 MGP_AJ_G0027890.1 mouse_genomes_project 3 136586328 136601520 + MGP_AJ_P0064063 Eif4e protein_coding protein_coding MGP_AJ_T0064064.1 MGP_AJ_G0027890.1 mouse_genomes_project 3 136592459 136595445 + Eif4e protein_coding retained_intron MGP_AJ_T0004277.1 MGP_AJ_G0003755.1 mouse_genomes_project 3 86418740 86420352 - Gm16069 antisense antisense MGP_AJ_T0014276.1 MGP_AJ_G0012371.1 mouse_genomes_project 3 115152483 115153164 - processed_pseudogene processed_pseudogene MGP_AJ_T0017948.1 MGP_AJ_G0015479.1 mouse_genomes_project 3 47576088 47665818 - Gm6209 processed_transcript lincRNA MGP_AJ_T0017949.1 MGP_AJ_G0015479.1 mouse_genomes_project 3 47637748 47642308 - Gm6209 processed_transcript retained_intron MGP_AJ_T0060972.1 MGP_AJ_G0027199.1 mouse_genomes_project 3 55741833 55759216 - MGP_AJ_P0060972 Siah2 protein_coding protein_coding MGP_AJ_T0060973.1 MGP_AJ_G0027199.1 mouse_genomes_project 3 55743071 55752952 - Siah2 protein_coding processed_transcript MGP_AJ_T0061590.1 MGP_AJ_G0027351.1 mouse_genomes_project 3 85436190 85452721 - MGP_AJ_P0061590 Tsacc protein_coding protein_coding MGP_AJ_T0061591.1 MGP_AJ_G0027351.1 mouse_genomes_project 3 85436193 85452560 - MGP_AJ_P0061591 Tsacc protein_coding protein_coding MGP_AJ_T0060240.1 MGP_AJ_G0027067.1 mouse_genomes_project 3 23785460 24124964 + MGP_AJ_P0060240 Spata16 protein_coding protein_coding MGP_AJ_T0060241.1 MGP_AJ_G0027067.1 mouse_genomes_project 3 23785490 24072447 + MGP_AJ_P0060241 Spata16 protein_coding protein_coding MGP_AJ_T0007566.1 MGP_AJ_G0006190.1 mouse_genomes_project 3 57985730 57992097 + Gm38326 lincRNA lincRNA MGP_AJ_T0001206.1 MGP_AJ_G0001130.1 mouse_genomes_project 3 49095419 49097218 - TEC TEC MGP_AJ_T0102010.1 MGP_AJ_G0039821.1 mouse_genomes_project 3 62020024 62020257 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_AJ_T0014318.1 MGP_AJ_G0012413.1 mouse_genomes_project 3 130840705 130842924 + processed_pseudogene processed_pseudogene MGP_AJ_T0001272.1 MGP_AJ_G0001196.1 mouse_genomes_project 3 94557522 94558046 + TEC TEC MGP_AJ_T0060333.1 MGP_AJ_G0027081.1 mouse_genomes_project 3 27721746 27724605 - MGP_AJ_P0060333 Actrt3 protein_coding protein_coding MGP_AJ_T0061266.1 MGP_AJ_G0027272.1 mouse_genomes_project 3 76165193 76253506 - MGP_AJ_P0061266 Rapgef2 protein_coding protein_coding MGP_AJ_T0061267.1 MGP_AJ_G0027272.1 mouse_genomes_project 3 76165193 76252606 - MGP_AJ_P0061267 Rapgef2 protein_coding protein_coding MGP_AJ_T0061268.1 MGP_AJ_G0027272.1 mouse_genomes_project 3 76165193 76397999 - MGP_AJ_P0061268 Rapgef2 protein_coding protein_coding MGP_AJ_T0061269.1 MGP_AJ_G0027272.1 mouse_genomes_project 3 76216896 76280412 - Rapgef2 protein_coding retained_intron MGP_AJ_T0061270.1 MGP_AJ_G0027272.1 mouse_genomes_project 3 76219986 76280514 - Rapgef2 protein_coding processed_transcript MGP_AJ_T0061271.1 MGP_AJ_G0027272.1 mouse_genomes_project 3 76276733 76289088 - Rapgef2 protein_coding retained_intron MGP_AJ_T0004384.1 MGP_AJ_G0003824.1 mouse_genomes_project 3 133948262 133974375 + antisense antisense MGP_AJ_T0004385.1 MGP_AJ_G0003824.1 mouse_genomes_project 3 133973605 134226691 + antisense antisense MGP_AJ_T0064439.1 MGP_AJ_G0027958.1 mouse_genomes_project 3 152124802 152129827 - MGP_AJ_P0064439 Rabggtb protein_coding nonsense_mediated_decay MGP_AJ_T0064440.1 MGP_AJ_G0027958.1 mouse_genomes_project 3 152124804 152129661 - MGP_AJ_P0064440 Rabggtb protein_coding protein_coding MGP_AJ_T0064441.1 MGP_AJ_G0027958.1 mouse_genomes_project 3 152124804 152130525 - MGP_AJ_P0064441 Rabggtb protein_coding protein_coding MGP_AJ_T0064442.1 MGP_AJ_G0027958.1 mouse_genomes_project 3 152124806 152130443 - MGP_AJ_P0064442 Rabggtb protein_coding nonsense_mediated_decay MGP_AJ_T0064443.1 MGP_AJ_G0027958.1 mouse_genomes_project 3 152124808 152130509 - MGP_AJ_P0064443 Rabggtb protein_coding nonsense_mediated_decay MGP_AJ_T0064444.1 MGP_AJ_G0027958.1 mouse_genomes_project 3 152124969 152129597 - MGP_AJ_P0064444 Rabggtb protein_coding nonsense_mediated_decay MGP_AJ_T0064445.1 MGP_AJ_G0027958.1 mouse_genomes_project 3 152125087 152129597 - MGP_AJ_P0064445 Rabggtb protein_coding nonsense_mediated_decay MGP_AJ_T0064446.1 MGP_AJ_G0027958.1 mouse_genomes_project 3 152125087 152129597 - MGP_AJ_P0064446 Rabggtb protein_coding nonsense_mediated_decay MGP_AJ_T0064447.1 MGP_AJ_G0027958.1 mouse_genomes_project 3 152125087 152129597 - MGP_AJ_P0064447 Rabggtb protein_coding nonsense_mediated_decay MGP_AJ_T0064448.1 MGP_AJ_G0027958.1 mouse_genomes_project 3 152125590 152129549 - MGP_AJ_P0064448 Rabggtb protein_coding nonsense_mediated_decay MGP_AJ_T0064449.1 MGP_AJ_G0027958.1 mouse_genomes_project 3 152126929 152130471 - MGP_AJ_P0064449 Rabggtb protein_coding nonsense_mediated_decay MGP_AJ_T0064450.1 MGP_AJ_G0027958.1 mouse_genomes_project 3 152127104 152130452 - MGP_AJ_P0064450 Rabggtb protein_coding unknown_likely_coding MGP_AJ_T0064451.1 MGP_AJ_G0027958.1 mouse_genomes_project 3 152129501 152130447 - Rabggtb protein_coding processed_transcript MGP_AJ_T0013904.1 MGP_AJ_G0011999.1 mouse_genomes_project 3 3874043 3874389 - processed_pseudogene processed_pseudogene MGP_AJ_T0060352.1 MGP_AJ_G0027087.1 mouse_genomes_project 3 27927477 27955834 + MGP_AJ_P0060352 Sec62 protein_coding protein_coding MGP_AJ_T0060353.1 MGP_AJ_G0027087.1 mouse_genomes_project 3 27927938 27936325 + Sec62 protein_coding retained_intron MGP_AJ_T0060354.1 MGP_AJ_G0027087.1 mouse_genomes_project 3 27953421 27954603 + Sec62 protein_coding processed_transcript MGP_AJ_T0062611.1 MGP_AJ_G0027586.1 mouse_genomes_project 3 94396424 94400382 + MGP_AJ_P0062611 Rbm8a protein_coding protein_coding MGP_AJ_T0062612.1 MGP_AJ_G0027586.1 mouse_genomes_project 3 94396431 94400382 + MGP_AJ_P0062612 Rbm8a protein_coding protein_coding MGP_AJ_T0062613.1 MGP_AJ_G0027586.1 mouse_genomes_project 3 94396453 94399401 + MGP_AJ_P0062613 Rbm8a protein_coding protein_coding MGP_AJ_T0062614.1 MGP_AJ_G0027586.1 mouse_genomes_project 3 94396464 94397046 + Rbm8a protein_coding retained_intron MGP_AJ_T0062615.1 MGP_AJ_G0027586.1 mouse_genomes_project 3 94397713 94398393 + Rbm8a protein_coding retained_intron MGP_AJ_T0064474.1 MGP_AJ_G0027963.1 mouse_genomes_project 3 152823100 152850225 + MGP_AJ_P0064474 Cryz protein_coding nonsense_mediated_decay MGP_AJ_T0064475.1 MGP_AJ_G0027963.1 mouse_genomes_project 3 152823100 152850225 + MGP_AJ_P0064475 Cryz protein_coding protein_coding MGP_AJ_T0064476.1 MGP_AJ_G0027963.1 mouse_genomes_project 3 152823100 152850223 + MGP_AJ_P0064476 Cryz protein_coding protein_coding MGP_AJ_T0064477.1 MGP_AJ_G0027963.1 mouse_genomes_project 3 152823533 152849210 + MGP_AJ_P0064477 Cryz protein_coding protein_coding MGP_AJ_T0064478.1 MGP_AJ_G0027963.1 mouse_genomes_project 3 152823586 152838579 + MGP_AJ_P0064478 Cryz protein_coding protein_coding MGP_AJ_T0064479.1 MGP_AJ_G0027963.1 mouse_genomes_project 3 152823611 152845654 + MGP_AJ_P0064479 Cryz protein_coding nonsense_mediated_decay MGP_AJ_T0064480.1 MGP_AJ_G0027963.1 mouse_genomes_project 3 152823741 152838461 + MGP_AJ_P0064480 Cryz protein_coding protein_coding MGP_AJ_T0064481.1 MGP_AJ_G0027963.1 mouse_genomes_project 3 152823791 152840863 + MGP_AJ_P0064481 Cryz protein_coding protein_coding MGP_AJ_T0064482.1 MGP_AJ_G0027963.1 mouse_genomes_project 3 152823827 152845554 + MGP_AJ_P0064482 Cryz protein_coding protein_coding MGP_AJ_T0064483.1 MGP_AJ_G0027963.1 mouse_genomes_project 3 152833085 152849213 + MGP_AJ_P0064483 Cryz protein_coding protein_coding MGP_AJ_T0064484.1 MGP_AJ_G0027963.1 mouse_genomes_project 3 152842896 152846415 + Cryz protein_coding retained_intron MGP_AJ_T0063583.1 MGP_AJ_G0027802.1 mouse_genomes_project 3 121017395 121023678 - MGP_AJ_P0063583 Gm10959 protein_coding protein_coding MGP_AJ_T0061471.1 MGP_AJ_G0027325.1 mouse_genomes_project 3 84478260 84491246 + MGP_AJ_P0061471 Cd5l protein_coding protein_coding MGP_AJ_T0014310.1 MGP_AJ_G0012405.1 mouse_genomes_project 3 128212828 128216499 + processed_pseudogene processed_pseudogene MGP_AJ_T0014165.1 MGP_AJ_G0012260.1 mouse_genomes_project 3 88007668 88008402 - processed_pseudogene processed_pseudogene MGP_AJ_T0060146.1 MGP_AJ_G0027047.1 mouse_genomes_project 3 15060506 15061056 + MGP_AJ_P0060146 Cypt12 protein_coding protein_coding MGP_AJ_T0014284.1 MGP_AJ_G0012379.1 mouse_genomes_project 3 119345279 119346051 + processed_pseudogene processed_pseudogene MGP_AJ_T0060912.1 MGP_AJ_G0027184.1 mouse_genomes_project 3 52524062 52534326 - MGP_AJ_P0060912 Gm21954 protein_coding protein_coding MGP_AJ_T0013996.1 MGP_AJ_G0012091.1 mouse_genomes_project 3 34258054 34258908 + processed_pseudogene processed_pseudogene MGP_AJ_T0001334.1 MGP_AJ_G0001258.1 mouse_genomes_project 3 125301002 125306963 - TEC TEC MGP_AJ_T0004357.1 MGP_AJ_G0003804.1 mouse_genomes_project 3 119603774 119609462 + A530020G20Rik antisense antisense MGP_AJ_T0004358.1 MGP_AJ_G0003804.1 mouse_genomes_project 3 119603784 119604639 + A530020G20Rik antisense antisense MGP_AJ_T0004359.1 MGP_AJ_G0003804.1 mouse_genomes_project 3 119603834 119606872 + A530020G20Rik antisense antisense MGP_AJ_T0064080.1 MGP_AJ_G0027893.1 mouse_genomes_project 3 137250942 137719143 + MGP_AJ_P0064080 Stpg2 protein_coding protein_coding MGP_AJ_T0064081.1 MGP_AJ_G0027893.1 mouse_genomes_project 3 137251141 137719832 + MGP_AJ_P0064081 Stpg2 protein_coding protein_coding MGP_AJ_T0001192.1 MGP_AJ_G0001118.1 mouse_genomes_project 3 48688606 48689707 + TEC TEC MGP_AJ_T0001396.1 MGP_AJ_G0001319.1 mouse_genomes_project 3 155452203 155453402 - TEC TEC MGP_AJ_T0007637.1 MGP_AJ_G0006243.1 mouse_genomes_project 3 94181565 94182134 + Gm26654 lincRNA lincRNA MGP_AJ_T0062605.1 MGP_AJ_G0027583.1 mouse_genomes_project 3 94340177 94356503 - MGP_AJ_P0062605 Polr3gl protein_coding protein_coding MGP_AJ_T0062606.1 MGP_AJ_G0027583.1 mouse_genomes_project 3 94340710 94343992 - Polr3gl protein_coding retained_intron MGP_AJ_T0062607.1 MGP_AJ_G0027583.1 mouse_genomes_project 3 94340718 94342473 - Polr3gl protein_coding retained_intron MGP_AJ_T0014129.1 MGP_AJ_G0012224.1 mouse_genomes_project 3 74050695 74051525 + processed_pseudogene processed_pseudogene MGP_AJ_T0060591.1 MGP_AJ_G0027127.1 mouse_genomes_project 3 34372089 34381804 - MGP_AJ_P0060591 Il21 protein_coding protein_coding MGP_AJ_T0060592.1 MGP_AJ_G0027127.1 mouse_genomes_project 3 34374595 34381751 - MGP_AJ_P0060592 Il21 protein_coding protein_coding MGP_AJ_T0060593.1 MGP_AJ_G0027127.1 mouse_genomes_project 3 34379480 34381822 - Il21 protein_coding retained_intron MGP_AJ_T0061571.1 MGP_AJ_G0027345.1 mouse_genomes_project 3 85201237 85203213 - MGP_AJ_P0061571 Apoa1bp protein_coding protein_coding MGP_AJ_T0063139.1 MGP_AJ_G0027712.1 mouse_genomes_project 3 105655962 105657512 - Strip1 protein_coding retained_intron MGP_AJ_T0063140.1 MGP_AJ_G0027712.1 mouse_genomes_project 3 105655962 105675125 - MGP_AJ_P0063140 Strip1 protein_coding protein_coding MGP_AJ_T0063141.1 MGP_AJ_G0027712.1 mouse_genomes_project 3 105655965 105670275 - Strip1 protein_coding processed_transcript MGP_AJ_T0063142.1 MGP_AJ_G0027712.1 mouse_genomes_project 3 105660324 105663506 - Strip1 protein_coding processed_transcript MGP_AJ_T0063143.1 MGP_AJ_G0027712.1 mouse_genomes_project 3 105663882 105675125 - Strip1 protein_coding retained_intron MGP_AJ_T0014122.1 MGP_AJ_G0012217.1 mouse_genomes_project 3 71113135 71114212 + processed_pseudogene processed_pseudogene MGP_AJ_T0017962.1 MGP_AJ_G0015486.1 mouse_genomes_project 3 85957386 86071416 - processed_transcript lincRNA MGP_AJ_T0017963.1 MGP_AJ_G0015486.1 mouse_genomes_project 3 85994018 86071355 - processed_transcript lincRNA MGP_AJ_T0017964.1 MGP_AJ_G0015486.1 mouse_genomes_project 3 85994024 86071236 - processed_transcript lincRNA MGP_AJ_T0017965.1 MGP_AJ_G0015486.1 mouse_genomes_project 3 86008903 86071380 - processed_transcript lincRNA MGP_AJ_T0017966.1 MGP_AJ_G0015486.1 mouse_genomes_project 3 86055697 86071399 - processed_transcript retained_intron MGP_AJ_T0004200.1 MGP_AJ_G0003699.1 mouse_genomes_project 3 2314271 2357783 - 2700069I18Rik antisense antisense MGP_AJ_T0004201.1 MGP_AJ_G0003699.1 mouse_genomes_project 3 2315665 2357801 - 2700069I18Rik antisense antisense MGP_AJ_T0004287.1 MGP_AJ_G0003762.1 mouse_genomes_project 3 89583377 89589503 + Gm43735 antisense antisense MGP_AJ_T0007481.1 MGP_AJ_G0006124.1 mouse_genomes_project 3 17651339 17654446 - Gm31466 lincRNA lincRNA MGP_AJ_T0098798.1 MGP_AJ_G0036782.1 mouse_genomes_project 3 19410684 19410974 + Rprl2 ribozyme ribozyme MGP_AJ_T0013920.1 MGP_AJ_G0012015.1 mouse_genomes_project 3 7897172 7897683 - processed_pseudogene processed_pseudogene MGP_AJ_T0011541.1 MGP_AJ_G0009663.1 mouse_genomes_project 3 70393012 70393311 - Gm22538 misc_RNA misc_RNA MGP_AJ_T0014208.1 MGP_AJ_G0012303.1 mouse_genomes_project 3 97333744 97333978 - processed_pseudogene processed_pseudogene MGP_AJ_T0063406.1 MGP_AJ_G0027769.1 mouse_genomes_project 3 114538428 114577237 + MGP_AJ_P0063406 Dbt protein_coding protein_coding MGP_AJ_T0063407.1 MGP_AJ_G0027769.1 mouse_genomes_project 3 114538477 114566421 + MGP_AJ_P0063407 Dbt protein_coding protein_coding MGP_AJ_T0063408.1 MGP_AJ_G0027769.1 mouse_genomes_project 3 114538486 114566443 + MGP_AJ_P0063408 Dbt protein_coding nonsense_mediated_decay MGP_AJ_T0063409.1 MGP_AJ_G0027769.1 mouse_genomes_project 3 114546331 114562178 + Dbt protein_coding retained_intron MGP_AJ_T0014108.1 MGP_AJ_G0012203.1 mouse_genomes_project 3 66842873 66843270 + processed_pseudogene processed_pseudogene MGP_AJ_T0062486.1 MGP_AJ_G0027552.1 mouse_genomes_project 3 93493046 93504024 - Tars2 protein_coding retained_intron MGP_AJ_T0062487.1 MGP_AJ_G0027552.1 mouse_genomes_project 3 93493046 93507909 - MGP_AJ_P0062487 Tars2 protein_coding protein_coding MGP_AJ_T0062488.1 MGP_AJ_G0027552.1 mouse_genomes_project 3 93493046 93507909 - MGP_AJ_P0062488 Tars2 protein_coding protein_coding MGP_AJ_T0062489.1 MGP_AJ_G0027552.1 mouse_genomes_project 3 93493046 93507900 - MGP_AJ_P0062489 Tars2 protein_coding protein_coding MGP_AJ_T0062490.1 MGP_AJ_G0027552.1 mouse_genomes_project 3 93493046 93507873 - MGP_AJ_P0062490 Tars2 protein_coding nonsense_mediated_decay MGP_AJ_T0062491.1 MGP_AJ_G0027552.1 mouse_genomes_project 3 93493046 93507889 - MGP_AJ_P0062491 Tars2 protein_coding nonsense_mediated_decay MGP_AJ_T0062492.1 MGP_AJ_G0027552.1 mouse_genomes_project 3 93493089 93495217 - Tars2 protein_coding processed_transcript MGP_AJ_T0062493.1 MGP_AJ_G0027552.1 mouse_genomes_project 3 93496923 93507921 - MGP_AJ_P0062493 Tars2 protein_coding protein_coding MGP_AJ_T0062494.1 MGP_AJ_G0027552.1 mouse_genomes_project 3 93498855 93501604 - Tars2 protein_coding processed_transcript MGP_AJ_T0062495.1 MGP_AJ_G0027552.1 mouse_genomes_project 3 93500586 93507909 - MGP_AJ_P0062495 Tars2 protein_coding protein_coding MGP_AJ_T0062496.1 MGP_AJ_G0027552.1 mouse_genomes_project 3 93500620 93507876 - MGP_AJ_P0062496 Tars2 protein_coding protein_coding MGP_AJ_T0062497.1 MGP_AJ_G0027552.1 mouse_genomes_project 3 93501623 93507909 - MGP_AJ_P0062497 Tars2 protein_coding protein_coding MGP_AJ_T0062498.1 MGP_AJ_G0027552.1 mouse_genomes_project 3 93501646 93507393 - Tars2 protein_coding processed_transcript MGP_AJ_T0062499.1 MGP_AJ_G0027552.1 mouse_genomes_project 3 93501648 93507887 - MGP_AJ_P0062499 Tars2 protein_coding protein_coding MGP_AJ_T0062500.1 MGP_AJ_G0027552.1 mouse_genomes_project 3 93503284 93504024 - Tars2 protein_coding retained_intron MGP_AJ_T0062501.1 MGP_AJ_G0027552.1 mouse_genomes_project 3 93503410 93507855 - Tars2 protein_coding processed_transcript MGP_AJ_T0062502.1 MGP_AJ_G0027552.1 mouse_genomes_project 3 93503745 93507510 - Tars2 protein_coding retained_intron MGP_AJ_T0062503.1 MGP_AJ_G0027552.1 mouse_genomes_project 3 93503809 93507887 - MGP_AJ_P0062503 Tars2 protein_coding nonsense_mediated_decay MGP_AJ_T0062504.1 MGP_AJ_G0027552.1 mouse_genomes_project 3 93507843 93513240 - MGP_AJ_P0062504 Tars2 protein_coding protein_coding MGP_AJ_T0099007.1 MGP_AJ_G0036984.1 mouse_genomes_project 3 103452396 103454345 + Gm43847 sense_intronic sense_intronic MGP_AJ_T0014180.1 MGP_AJ_G0012275.1 mouse_genomes_project 3 90885032 90885487 + processed_pseudogene processed_pseudogene MGP_AJ_T0001358.1 MGP_AJ_G0001281.1 mouse_genomes_project 3 131050522 131052368 - TEC TEC MGP_AJ_T0098995.1 MGP_AJ_G0036972.1 mouse_genomes_project 3 102099013 102099729 - C030032O16Rik sense_intronic sense_intronic MGP_AJ_T0061877.1 MGP_AJ_G0027394.1 mouse_genomes_project 3 86560292 86569372 - MGP_AJ_P0061877 Efna3 protein_coding protein_coding MGP_AJ_T0061878.1 MGP_AJ_G0027394.1 mouse_genomes_project 3 86561757 86569294 - MGP_AJ_P0061878 Efna3 protein_coding protein_coding MGP_AJ_T0061879.1 MGP_AJ_G0027394.1 mouse_genomes_project 3 86562252 86568038 - Efna3 protein_coding processed_transcript MGP_AJ_T0062627.1 MGP_AJ_G0027590.1 mouse_genomes_project 3 94436892 94457814 + MGP_AJ_P0062627 protein_coding nonsense_mediated_decay MGP_AJ_T0062628.1 MGP_AJ_G0027590.1 mouse_genomes_project 3 94436976 94457844 + MGP_AJ_P0062628 protein_coding unknown_likely_coding MGP_AJ_T0062629.1 MGP_AJ_G0027590.1 mouse_genomes_project 3 94446749 94449882 + protein_coding processed_transcript MGP_AJ_T0007489.1 MGP_AJ_G0006132.1 mouse_genomes_project 3 25924879 25927405 - Gm32950 lincRNA lincRNA MGP_AJ_T0004378.1 MGP_AJ_G0003820.1 mouse_genomes_project 3 129373701 129387713 + 4930534D22Rik antisense antisense MGP_AJ_T0013995.1 MGP_AJ_G0012090.1 mouse_genomes_project 3 34230393 34231089 + processed_pseudogene processed_pseudogene MGP_AJ_T0013945.1 MGP_AJ_G0012040.1 mouse_genomes_project 3 15033369 15034285 + processed_pseudogene processed_pseudogene MGP_AJ_T0102573.1 MGP_AJ_G0040315.1 mouse_genomes_project 3 120213683 120317368 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0014227.1 MGP_AJ_G0012322.1 mouse_genomes_project 3 101182428 101182717 - processed_pseudogene processed_pseudogene MGP_AJ_T0007511.1 MGP_AJ_G0006152.1 mouse_genomes_project 3 33661530 33668292 - Gm11549 lincRNA lincRNA MGP_AJ_T0001304.1 MGP_AJ_G0001228.1 mouse_genomes_project 3 119499329 119500617 + TEC TEC MGP_AJ_T0060025.1 MGP_AJ_G0027008.1 mouse_genomes_project 3 1315637 1317780 + MGP_AJ_P0060025 Hnrnph2 protein_coding protein_coding MGP_AJ_T0014260.1 MGP_AJ_G0012355.1 mouse_genomes_project 3 110613080 110613473 + processed_pseudogene processed_pseudogene MGP_AJ_T0007577.1 MGP_AJ_G0006200.1 mouse_genomes_project 3 70502532 70650049 + Gm38353 lincRNA lincRNA MGP_AJ_T0062932.1 MGP_AJ_G0027660.1 mouse_genomes_project 3 101752951 101782821 + MGP_AJ_P0062932 protein_coding nonsense_mediated_decay MGP_AJ_T0060334.1 MGP_AJ_G0027082.1 mouse_genomes_project 3 27726729 27745292 + MGP_AJ_P0060334 Mynn protein_coding protein_coding MGP_AJ_T0060335.1 MGP_AJ_G0027082.1 mouse_genomes_project 3 27727295 27745292 + MGP_AJ_P0060335 Mynn protein_coding nonsense_mediated_decay MGP_AJ_T0060336.1 MGP_AJ_G0027082.1 mouse_genomes_project 3 27727301 27743787 + MGP_AJ_P0060336 Mynn protein_coding protein_coding MGP_AJ_T0060337.1 MGP_AJ_G0027082.1 mouse_genomes_project 3 27727303 27728823 + Mynn protein_coding retained_intron MGP_AJ_T0060338.1 MGP_AJ_G0027082.1 mouse_genomes_project 3 27727308 27743920 + MGP_AJ_P0060338 Mynn protein_coding nonsense_mediated_decay MGP_AJ_T0060339.1 MGP_AJ_G0027082.1 mouse_genomes_project 3 27738280 27742214 + Mynn protein_coding retained_intron MGP_AJ_T0060054.1 MGP_AJ_G0027017.1 mouse_genomes_project 3 5751527 5755425 - MGP_AJ_P0060054 Hey1 protein_coding protein_coding MGP_AJ_T0060055.1 MGP_AJ_G0027017.1 mouse_genomes_project 3 5752867 5755153 - Hey1 protein_coding retained_intron MGP_AJ_T0060056.1 MGP_AJ_G0027017.1 mouse_genomes_project 3 5752964 5754794 - Hey1 protein_coding retained_intron MGP_AJ_T0060057.1 MGP_AJ_G0027017.1 mouse_genomes_project 3 5753710 5755133 - Hey1 protein_coding retained_intron MGP_AJ_T0098973.1 MGP_AJ_G0036950.1 mouse_genomes_project 3 99010945 99013589 - Gm43465 sense_intronic sense_intronic MGP_AJ_T0061416.1 MGP_AJ_G0027310.1 mouse_genomes_project 3 81777031 81818266 + MGP_AJ_P0061416 Tmem154 protein_coding protein_coding MGP_AJ_T0061417.1 MGP_AJ_G0027310.1 mouse_genomes_project 3 81777049 81796821 + Tmem154 protein_coding retained_intron MGP_AJ_T0061418.1 MGP_AJ_G0027310.1 mouse_genomes_project 3 81777209 81796711 + Tmem154 protein_coding processed_transcript MGP_AJ_T0061419.1 MGP_AJ_G0027310.1 mouse_genomes_project 3 81801356 81803665 + Tmem154 protein_coding retained_intron MGP_AJ_T0007668.1 MGP_AJ_G0006269.1 mouse_genomes_project 3 106287221 106300666 + Gm42754 lincRNA lincRNA MGP_AJ_T0062918.1 MGP_AJ_G0027657.1 mouse_genomes_project 3 101683147 101734914 - MGP_AJ_P0062918 Hipk1 protein_coding protein_coding MGP_AJ_T0062919.1 MGP_AJ_G0027657.1 mouse_genomes_project 3 101686894 101734432 - MGP_AJ_P0062919 Hipk1 protein_coding protein_coding MGP_AJ_T0062920.1 MGP_AJ_G0027657.1 mouse_genomes_project 3 101686992 101734607 - MGP_AJ_P0062920 Hipk1 protein_coding protein_coding MGP_AJ_T0062921.1 MGP_AJ_G0027657.1 mouse_genomes_project 3 101688488 101734912 - MGP_AJ_P0062921 Hipk1 protein_coding nonsense_mediated_decay MGP_AJ_T0062922.1 MGP_AJ_G0027657.1 mouse_genomes_project 3 101691447 101694371 - Hipk1 protein_coding retained_intron MGP_AJ_T0062923.1 MGP_AJ_G0027657.1 mouse_genomes_project 3 101692696 101694320 - Hipk1 protein_coding retained_intron MGP_AJ_T0062924.1 MGP_AJ_G0027657.1 mouse_genomes_project 3 101697465 101734626 - Hipk1 protein_coding retained_intron MGP_AJ_T0011552.1 MGP_AJ_G0009674.1 mouse_genomes_project 3 124168427 124168695 - Gm26275 misc_RNA misc_RNA MGP_AJ_T0014219.1 MGP_AJ_G0012314.1 mouse_genomes_project 3 99995683 99995961 + processed_pseudogene processed_pseudogene MGP_AJ_T0001351.1 MGP_AJ_G0001274.1 mouse_genomes_project 3 128967873 128969252 + TEC TEC MGP_AJ_T0099011.1 MGP_AJ_G0036988.1 mouse_genomes_project 3 103964561 103966084 - Gm42721 sense_intronic sense_intronic MGP_AJ_T0014147.1 MGP_AJ_G0012242.1 mouse_genomes_project 3 80795074 80795663 + processed_pseudogene processed_pseudogene MGP_AJ_T0014048.1 MGP_AJ_G0012143.1 mouse_genomes_project 3 50375516 50376254 - processed_pseudogene processed_pseudogene MGP_AJ_T0062944.1 MGP_AJ_G0027662.1 mouse_genomes_project 3 101807333 101861794 + MGP_AJ_P0062944 Ptpn22 protein_coding unknown_likely_coding MGP_AJ_T0062945.1 MGP_AJ_G0027662.1 mouse_genomes_project 3 101809014 101861781 + MGP_AJ_P0062945 Ptpn22 protein_coding nonsense_mediated_decay MGP_AJ_T0062946.1 MGP_AJ_G0027662.1 mouse_genomes_project 3 101809774 101826223 + Ptpn22 protein_coding processed_transcript MGP_AJ_T0062947.1 MGP_AJ_G0027662.1 mouse_genomes_project 3 101827526 101829409 + Ptpn22 protein_coding retained_intron MGP_AJ_T0062948.1 MGP_AJ_G0027662.1 mouse_genomes_project 3 101835721 101837903 + Ptpn22 protein_coding retained_intron MGP_AJ_T0062949.1 MGP_AJ_G0027662.1 mouse_genomes_project 3 101835811 101852936 + Ptpn22 protein_coding processed_transcript MGP_AJ_T0062950.1 MGP_AJ_G0027662.1 mouse_genomes_project 3 101838361 101858995 + Ptpn22 protein_coding retained_intron MGP_AJ_T0062951.1 MGP_AJ_G0027662.1 mouse_genomes_project 3 101851588 101861783 + Ptpn22 protein_coding retained_intron MGP_AJ_T0007519.1 MGP_AJ_G0006159.1 mouse_genomes_project 3 35497673 35501918 + Gm42920 lincRNA lincRNA MGP_AJ_T0014154.1 MGP_AJ_G0012249.1 mouse_genomes_project 3 83779965 83780101 - processed_pseudogene processed_pseudogene MGP_AJ_T0064492.1 MGP_AJ_G0027966.1 mouse_genomes_project 3 153320786 153329303 - MGP_AJ_P0064492 Fpgt protein_coding protein_coding MGP_AJ_T0064493.1 MGP_AJ_G0027966.1 mouse_genomes_project 3 153323587 153329097 - Fpgt protein_coding processed_transcript MGP_AJ_T0064494.1 MGP_AJ_G0027966.1 mouse_genomes_project 3 153324896 153326388 - Fpgt protein_coding retained_intron MGP_AJ_T0064495.1 MGP_AJ_G0027966.1 mouse_genomes_project 3 153326811 153329268 - Fpgt protein_coding retained_intron MGP_AJ_T0064496.1 MGP_AJ_G0027966.1 mouse_genomes_project 3 153327224 153328455 - Fpgt protein_coding processed_transcript MGP_AJ_T0064497.1 MGP_AJ_G0027966.1 mouse_genomes_project 3 153327309 153329127 - Fpgt protein_coding processed_transcript MGP_AJ_T0004401.1 MGP_AJ_G0003836.1 mouse_genomes_project 3 144773348 144783136 + Gm16325 antisense antisense MGP_AJ_T0004402.1 MGP_AJ_G0003836.1 mouse_genomes_project 3 144780029 144780933 + Gm16325 antisense antisense MGP_AJ_T0102545.1 MGP_AJ_G0040287.1 mouse_genomes_project 3 85523673 85528085 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0014041.1 MGP_AJ_G0012136.1 mouse_genomes_project 3 48381714 48382099 + processed_pseudogene processed_pseudogene MGP_AJ_T0010565.1 MGP_AJ_G0008687.1 mouse_genomes_project 3 155793062 155793133 + Mir186 miRNA miRNA MGP_AJ_T0014044.1 MGP_AJ_G0012139.1 mouse_genomes_project 3 48651992 48652425 - processed_pseudogene processed_pseudogene MGP_AJ_T0098993.1 MGP_AJ_G0036970.1 mouse_genomes_project 3 102089041 102090698 - Gm42701 sense_intronic sense_intronic MGP_AJ_T0004299.1 MGP_AJ_G0003770.1 mouse_genomes_project 3 93625290 93641361 + C920021L13Rik antisense antisense MGP_AJ_T0004300.1 MGP_AJ_G0003770.1 mouse_genomes_project 3 93625293 93642498 + C920021L13Rik antisense antisense MGP_AJ_T0004301.1 MGP_AJ_G0003770.1 mouse_genomes_project 3 93625299 93628659 + C920021L13Rik antisense antisense MGP_AJ_T0062695.1 MGP_AJ_G0027604.1 mouse_genomes_project 3 95427975 95454455 + MGP_AJ_P0062695 Fmo5 protein_coding protein_coding MGP_AJ_T0062696.1 MGP_AJ_G0027604.1 mouse_genomes_project 3 95428009 95451727 + MGP_AJ_P0062696 Fmo5 protein_coding protein_coding MGP_AJ_T0062697.1 MGP_AJ_G0027604.1 mouse_genomes_project 3 95428019 95429104 + Fmo5 protein_coding retained_intron MGP_AJ_T0062698.1 MGP_AJ_G0027604.1 mouse_genomes_project 3 95428028 95451777 + MGP_AJ_P0062698 Fmo5 protein_coding protein_coding MGP_AJ_T0062699.1 MGP_AJ_G0027604.1 mouse_genomes_project 3 95428054 95438174 + Fmo5 protein_coding processed_transcript MGP_AJ_T0013947.1 MGP_AJ_G0012042.1 mouse_genomes_project 3 15688217 15689416 + processed_pseudogene processed_pseudogene MGP_AJ_T0001290.1 MGP_AJ_G0001214.1 mouse_genomes_project 3 108672677 108676420 + TEC TEC MGP_AJ_T0061853.1 MGP_AJ_G0027389.1 mouse_genomes_project 3 86479320 86490210 - MGP_AJ_P0061853 Trim46 protein_coding protein_coding MGP_AJ_T0061854.1 MGP_AJ_G0027389.1 mouse_genomes_project 3 86479320 86491098 - MGP_AJ_P0061854 Trim46 protein_coding protein_coding MGP_AJ_T0061855.1 MGP_AJ_G0027389.1 mouse_genomes_project 3 86479320 86490396 - MGP_AJ_P0061855 Trim46 protein_coding protein_coding MGP_AJ_T0061856.1 MGP_AJ_G0027389.1 mouse_genomes_project 3 86479978 86484486 - Trim46 protein_coding processed_transcript MGP_AJ_T0061857.1 MGP_AJ_G0027389.1 mouse_genomes_project 3 86480011 86491073 - MGP_AJ_P0061857 Trim46 protein_coding nonsense_mediated_decay MGP_AJ_T0061858.1 MGP_AJ_G0027389.1 mouse_genomes_project 3 86489490 86491510 - MGP_AJ_P0061858 Trim46 protein_coding protein_coding MGP_AJ_T0101170.1 MGP_AJ_G0039136.1 mouse_genomes_project 3 141735978 141736103 + Gm24728 snoRNA snoRNA MGP_AJ_T0060659.1 MGP_AJ_G0027141.1 mouse_genomes_project 3 37837800 37918637 - MGP_AJ_P0060659 Mfsd8 protein_coding protein_coding MGP_AJ_T0060660.1 MGP_AJ_G0027141.1 mouse_genomes_project 3 37839194 37870234 - MGP_AJ_P0060660 Mfsd8 protein_coding nonsense_mediated_decay MGP_AJ_T0060661.1 MGP_AJ_G0027141.1 mouse_genomes_project 3 37847136 37850651 - Mfsd8 protein_coding retained_intron MGP_AJ_T0060662.1 MGP_AJ_G0027141.1 mouse_genomes_project 3 37862517 37870318 - Mfsd8 protein_coding retained_intron MGP_AJ_T0060663.1 MGP_AJ_G0027141.1 mouse_genomes_project 3 37863642 37870248 - MGP_AJ_P0060663 Mfsd8 protein_coding protein_coding MGP_AJ_T0061321.1 MGP_AJ_G0027283.1 mouse_genomes_project 3 78132644 78319783 + MGP_AJ_P0061321 Pdgfc protein_coding protein_coding MGP_AJ_T0061322.1 MGP_AJ_G0027283.1 mouse_genomes_project 3 78133400 78319777 + MGP_AJ_P0061322 Pdgfc protein_coding nonsense_mediated_decay MGP_AJ_T0061323.1 MGP_AJ_G0027283.1 mouse_genomes_project 3 78133652 78316513 + MGP_AJ_P0061323 Pdgfc protein_coding nonsense_mediated_decay MGP_AJ_T0007606.1 MGP_AJ_G0006225.1 mouse_genomes_project 3 85356595 85361072 + Gm3764 lincRNA lincRNA MGP_AJ_T0007607.1 MGP_AJ_G0006225.1 mouse_genomes_project 3 85356608 85375333 + Gm3764 lincRNA lincRNA MGP_AJ_T0007608.1 MGP_AJ_G0006225.1 mouse_genomes_project 3 85357088 85375890 + Gm3764 lincRNA lincRNA MGP_AJ_T0007609.1 MGP_AJ_G0006225.1 mouse_genomes_project 3 85359248 85374183 + Gm3764 lincRNA lincRNA MGP_AJ_T0007610.1 MGP_AJ_G0006225.1 mouse_genomes_project 3 85364363 85371755 + Gm3764 lincRNA lincRNA MGP_AJ_T0007611.1 MGP_AJ_G0006225.1 mouse_genomes_project 3 85364373 85375941 + Gm3764 lincRNA lincRNA MGP_AJ_T0007612.1 MGP_AJ_G0006225.1 mouse_genomes_project 3 85372558 85374197 + Gm3764 lincRNA lincRNA MGP_AJ_T0007613.1 MGP_AJ_G0006225.1 mouse_genomes_project 3 85374174 85379843 + Gm3764 lincRNA lincRNA MGP_AJ_T0007614.1 MGP_AJ_G0006225.1 mouse_genomes_project 3 85375827 85377904 + Gm3764 lincRNA lincRNA MGP_AJ_T0007615.1 MGP_AJ_G0006225.1 mouse_genomes_project 3 85378455 85379654 + Gm3764 lincRNA lincRNA MGP_AJ_T0007616.1 MGP_AJ_G0006225.1 mouse_genomes_project 3 85378670 85379843 + Gm3764 lincRNA lincRNA MGP_AJ_T0061729.1 MGP_AJ_G0027371.1 mouse_genomes_project 3 85888846 85902443 + MGP_AJ_P0061729 Rit1 protein_coding protein_coding MGP_AJ_T0061730.1 MGP_AJ_G0027371.1 mouse_genomes_project 3 85888858 85897884 + MGP_AJ_P0061730 Rit1 protein_coding protein_coding MGP_AJ_T0061731.1 MGP_AJ_G0027371.1 mouse_genomes_project 3 85888863 85889985 + Rit1 protein_coding retained_intron MGP_AJ_T0061732.1 MGP_AJ_G0027371.1 mouse_genomes_project 3 85888876 85902429 + MGP_AJ_P0061732 Rit1 protein_coding nonsense_mediated_decay MGP_AJ_T0061733.1 MGP_AJ_G0027371.1 mouse_genomes_project 3 85888880 85902437 + Rit1 protein_coding retained_intron MGP_AJ_T0061734.1 MGP_AJ_G0027371.1 mouse_genomes_project 3 85888881 85900936 + MGP_AJ_P0061734 Rit1 protein_coding nonsense_mediated_decay MGP_AJ_T0061735.1 MGP_AJ_G0027371.1 mouse_genomes_project 3 85888893 85897834 + Rit1 protein_coding retained_intron MGP_AJ_T0007746.1 MGP_AJ_G0006333.1 mouse_genomes_project 3 141458509 141460641 + 1700001N15Rik lincRNA lincRNA MGP_AJ_T0062132.1 MGP_AJ_G0027441.1 mouse_genomes_project 3 87909522 87911055 + MGP_AJ_P0062132 S100a6 protein_coding protein_coding MGP_AJ_T0062133.1 MGP_AJ_G0027441.1 mouse_genomes_project 3 87909794 87910648 + S100a6 protein_coding retained_intron MGP_AJ_T0062134.1 MGP_AJ_G0027441.1 mouse_genomes_project 3 87909945 87911055 + MGP_AJ_P0062134 S100a6 protein_coding protein_coding MGP_AJ_T0062135.1 MGP_AJ_G0027441.1 mouse_genomes_project 3 87910400 87920867 + MGP_AJ_P0062135 S100a6 protein_coding nonsense_mediated_decay MGP_AJ_T0064502.1 MGP_AJ_G0027968.1 mouse_genomes_project 3 154810305 155569071 + MGP_AJ_P0064502 Negr1 protein_coding protein_coding MGP_AJ_T0064503.1 MGP_AJ_G0027968.1 mouse_genomes_project 3 154810470 155416432 + MGP_AJ_P0064503 Negr1 protein_coding protein_coding MGP_AJ_T0064504.1 MGP_AJ_G0027968.1 mouse_genomes_project 3 154810480 155443785 + MGP_AJ_P0064504 Negr1 protein_coding protein_coding MGP_AJ_T0064505.1 MGP_AJ_G0027968.1 mouse_genomes_project 3 154810657 154814722 + Negr1 protein_coding retained_intron MGP_AJ_T0064506.1 MGP_AJ_G0027968.1 mouse_genomes_project 3 154810661 155258867 + MGP_AJ_P0064506 Negr1 protein_coding protein_coding MGP_AJ_T0014351.1 MGP_AJ_G0012446.1 mouse_genomes_project 3 138525935 138526485 - processed_pseudogene processed_pseudogene MGP_AJ_T0061612.1 MGP_AJ_G0027354.1 mouse_genomes_project 3 85485585 85491321 - MGP_AJ_P0061612 Tmem79 protein_coding protein_coding MGP_AJ_T0061613.1 MGP_AJ_G0027354.1 mouse_genomes_project 3 85485976 85491085 - MGP_AJ_P0061613 Tmem79 protein_coding protein_coding MGP_AJ_T0061614.1 MGP_AJ_G0027354.1 mouse_genomes_project 3 85485977 85491271 - MGP_AJ_P0061614 Tmem79 protein_coding protein_coding MGP_AJ_T0061615.1 MGP_AJ_G0027354.1 mouse_genomes_project 3 85489954 85492959 - MGP_AJ_P0061615 Tmem79 protein_coding protein_coding MGP_AJ_T0101145.1 MGP_AJ_G0039111.1 mouse_genomes_project 3 92828427 92828512 - Gm24920 snoRNA snoRNA MGP_AJ_T0007544.1 MGP_AJ_G0006174.1 mouse_genomes_project 3 49159593 49248519 - Gm37202 lincRNA lincRNA MGP_AJ_T0004268.1 MGP_AJ_G0003748.1 mouse_genomes_project 3 80884047 80900140 - Gm26771 antisense antisense MGP_AJ_T0007588.1 MGP_AJ_G0006208.1 mouse_genomes_project 3 77154415 77311945 + A330069K06Rik lincRNA lincRNA MGP_AJ_T0014201.1 MGP_AJ_G0012296.1 mouse_genomes_project 3 94913090 94913693 - processed_pseudogene processed_pseudogene MGP_AJ_T0063126.1 MGP_AJ_G0027708.1 mouse_genomes_project 3 105483879 105505077 - MGP_AJ_P0063126 Kcnc4 protein_coding protein_coding MGP_AJ_T0063178.1 MGP_AJ_G0027720.1 mouse_genomes_project 3 106019520 106025138 - MGP_AJ_P0063178 Gstm3 protein_coding protein_coding MGP_AJ_T0063585.1 MGP_AJ_G0027804.1 mouse_genomes_project 3 121036084 121089039 - MGP_AJ_P0063585 Usp53 protein_coding protein_coding MGP_AJ_T0063586.1 MGP_AJ_G0027804.1 mouse_genomes_project 3 121051788 121054219 - Usp53 protein_coding retained_intron MGP_AJ_T0063587.1 MGP_AJ_G0027804.1 mouse_genomes_project 3 121055888 121088852 - MGP_AJ_P0063587 Usp53 protein_coding nonsense_mediated_decay MGP_AJ_T0063588.1 MGP_AJ_G0027804.1 mouse_genomes_project 3 121057235 121089035 - MGP_AJ_P0063588 Usp53 protein_coding protein_coding MGP_AJ_T0063589.1 MGP_AJ_G0027804.1 mouse_genomes_project 3 121060206 121089033 - MGP_AJ_P0063589 Usp53 protein_coding protein_coding MGP_AJ_T0063590.1 MGP_AJ_G0027804.1 mouse_genomes_project 3 121061645 121089039 - Usp53 protein_coding retained_intron MGP_AJ_T0063591.1 MGP_AJ_G0027804.1 mouse_genomes_project 3 121064020 121066423 - Usp53 protein_coding retained_intron MGP_AJ_T0063592.1 MGP_AJ_G0027804.1 mouse_genomes_project 3 121064063 121089000 - MGP_AJ_P0063592 Usp53 protein_coding protein_coding MGP_AJ_T0063593.1 MGP_AJ_G0027804.1 mouse_genomes_project 3 121064734 121067937 - Usp53 protein_coding retained_intron MGP_AJ_T0063594.1 MGP_AJ_G0027804.1 mouse_genomes_project 3 121072397 121088422 - Usp53 protein_coding retained_intron MGP_AJ_T0007678.1 MGP_AJ_G0006278.1 mouse_genomes_project 3 115110607 115127202 - 1700061I17Rik lincRNA lincRNA MGP_AJ_T0001163.1 MGP_AJ_G0001089.1 mouse_genomes_project 3 38049742 38053402 + TEC TEC MGP_AJ_T0014316.1 MGP_AJ_G0012411.1 mouse_genomes_project 3 129432389 129432584 + processed_pseudogene processed_pseudogene MGP_AJ_T0099879.1 MGP_AJ_G0037845.1 mouse_genomes_project 3 135133675 135133782 + Gm26107 snRNA snRNA MGP_AJ_T0004291.1 MGP_AJ_G0003766.1 mouse_genomes_project 3 92731222 92733809 - A730011C13Rik antisense antisense MGP_AJ_T0004292.1 MGP_AJ_G0003766.1 mouse_genomes_project 3 92731855 92734163 - A730011C13Rik antisense antisense MGP_AJ_T0099868.1 MGP_AJ_G0037834.1 mouse_genomes_project 3 107934104 107934210 + Gm25681 snRNA snRNA MGP_AJ_T0014098.1 MGP_AJ_G0012193.1 mouse_genomes_project 3 64818014 64818962 - processed_pseudogene processed_pseudogene MGP_AJ_T0014228.1 MGP_AJ_G0012323.1 mouse_genomes_project 3 101642102 101642502 + processed_pseudogene processed_pseudogene MGP_AJ_T0013913.1 MGP_AJ_G0012008.1 mouse_genomes_project 3 6171552 6171943 + processed_pseudogene processed_pseudogene MGP_AJ_T0101144.1 MGP_AJ_G0039110.1 mouse_genomes_project 3 87400764 87400896 + Gm23723 snoRNA snoRNA MGP_AJ_T0063462.1 MGP_AJ_G0027780.1 mouse_genomes_project 3 115364329 115406678 - MGP_AJ_P0063462 Plppr4 protein_coding protein_coding MGP_AJ_T0063463.1 MGP_AJ_G0027780.1 mouse_genomes_project 3 115366299 115406678 - Plppr4 protein_coding retained_intron MGP_AJ_T0063464.1 MGP_AJ_G0027780.1 mouse_genomes_project 3 115367183 115406050 - MGP_AJ_P0063464 Plppr4 protein_coding protein_coding MGP_AJ_T0061588.1 MGP_AJ_G0027350.1 mouse_genomes_project 3 85394035 85441653 - MGP_AJ_P0061588 Gm38392 protein_coding protein_coding MGP_AJ_T0061589.1 MGP_AJ_G0027350.1 mouse_genomes_project 3 85395850 85441653 - MGP_AJ_P0061589 Gm38392 protein_coding nonsense_mediated_decay MGP_AJ_T0001293.1 MGP_AJ_G0001217.1 mouse_genomes_project 3 114559413 114559852 + TEC TEC MGP_AJ_T0060192.1 MGP_AJ_G0027058.1 mouse_genomes_project 3 17121224 17163991 - MGP_AJ_P0060192 Hps3 protein_coding protein_coding MGP_AJ_T0060193.1 MGP_AJ_G0027058.1 mouse_genomes_project 3 17121230 17163956 - Hps3 protein_coding retained_intron MGP_AJ_T0060194.1 MGP_AJ_G0027058.1 mouse_genomes_project 3 17121485 17142572 - Hps3 protein_coding processed_transcript MGP_AJ_T0060195.1 MGP_AJ_G0027058.1 mouse_genomes_project 3 17121488 17163978 - MGP_AJ_P0060195 Hps3 protein_coding protein_coding MGP_AJ_T0060196.1 MGP_AJ_G0027058.1 mouse_genomes_project 3 17130249 17141378 - Hps3 protein_coding processed_transcript MGP_AJ_T0060197.1 MGP_AJ_G0027058.1 mouse_genomes_project 3 17139675 17163978 - Hps3 protein_coding retained_intron MGP_AJ_T0060198.1 MGP_AJ_G0027058.1 mouse_genomes_project 3 17140970 17163970 - Hps3 protein_coding retained_intron MGP_AJ_T0060199.1 MGP_AJ_G0027058.1 mouse_genomes_project 3 17143397 17163978 - Hps3 protein_coding retained_intron MGP_AJ_T0060200.1 MGP_AJ_G0027058.1 mouse_genomes_project 3 17143662 17163972 - Hps3 protein_coding processed_transcript MGP_AJ_T0060201.1 MGP_AJ_G0027058.1 mouse_genomes_project 3 17144805 17163970 - Hps3 protein_coding retained_intron MGP_AJ_T0060202.1 MGP_AJ_G0027058.1 mouse_genomes_project 3 17163503 17163978 - Hps3 protein_coding processed_transcript MGP_AJ_T0010523.1 MGP_AJ_G0008645.1 mouse_genomes_project 3 85365476 85365565 + Mir9-1 miRNA miRNA MGP_AJ_T0014020.1 MGP_AJ_G0012115.1 mouse_genomes_project 3 41525661 41526070 - processed_pseudogene processed_pseudogene MGP_AJ_T0007516.1 MGP_AJ_G0006156.1 mouse_genomes_project 3 35047960 35136911 + lincRNA lincRNA MGP_AJ_T0099874.1 MGP_AJ_G0037840.1 mouse_genomes_project 3 122445066 122445176 + Gm22575 snRNA snRNA MGP_AJ_T0062166.1 MGP_AJ_G0027465.1 mouse_genomes_project 3 89980970 89983332 - MGP_AJ_P0062166 Sprr3 protein_coding protein_coding MGP_AJ_T0014270.1 MGP_AJ_G0012365.1 mouse_genomes_project 3 113533181 113533804 + processed_pseudogene processed_pseudogene MGP_AJ_T0004386.1 MGP_AJ_G0003825.1 mouse_genomes_project 3 135910263 135912061 - Gm43403 antisense antisense MGP_AJ_T0004387.1 MGP_AJ_G0003825.1 mouse_genomes_project 3 135911374 135911871 - Gm43403 antisense antisense MGP_AJ_T0004312.1 MGP_AJ_G0003779.1 mouse_genomes_project 3 95530015 95535813 + Gm43076 antisense antisense MGP_AJ_T0004313.1 MGP_AJ_G0003779.1 mouse_genomes_project 3 95530205 95532748 + Gm43076 antisense antisense MGP_AJ_T0062776.1 MGP_AJ_G0027627.1 mouse_genomes_project 3 98470636 98600013 - MGP_AJ_P0062776 Man1a2 protein_coding protein_coding MGP_AJ_T0062777.1 MGP_AJ_G0027627.1 mouse_genomes_project 3 98497380 98562009 - Man1a2 protein_coding processed_transcript MGP_AJ_T0062778.1 MGP_AJ_G0027627.1 mouse_genomes_project 3 98529507 98599122 - MGP_AJ_P0062778 Man1a2 protein_coding protein_coding MGP_AJ_T0062779.1 MGP_AJ_G0027627.1 mouse_genomes_project 3 98553962 98599635 - MGP_AJ_P0062779 Man1a2 protein_coding nonsense_mediated_decay MGP_AJ_T0062780.1 MGP_AJ_G0027627.1 mouse_genomes_project 3 98565477 98599818 - Man1a2 protein_coding processed_transcript MGP_AJ_T0062781.1 MGP_AJ_G0027627.1 mouse_genomes_project 3 98599102 98599969 - Man1a2 protein_coding processed_transcript MGP_AJ_T0060388.1 MGP_AJ_G0027094.1 mouse_genomes_project 3 29090596 29403718 + MGP_AJ_P0060388 Kcnmb2 protein_coding protein_coding MGP_AJ_T0060389.1 MGP_AJ_G0027094.1 mouse_genomes_project 3 29354861 29402313 + MGP_AJ_P0060389 Kcnmb2 protein_coding protein_coding MGP_AJ_T0060960.1 MGP_AJ_G0027195.1 mouse_genomes_project 3 55577628 55583705 - MGP_AJ_P0060960 Serp1 protein_coding protein_coding MGP_AJ_T0001276.1 MGP_AJ_G0001200.1 mouse_genomes_project 3 95408684 95412585 + TEC TEC MGP_AJ_T0063371.1 MGP_AJ_G0027762.1 mouse_genomes_project 3 113911563 113938832 + MGP_AJ_P0063371 Dph5 protein_coding protein_coding MGP_AJ_T0063372.1 MGP_AJ_G0027762.1 mouse_genomes_project 3 113911578 113912205 + MGP_AJ_P0063372 Dph5 protein_coding protein_coding MGP_AJ_T0063373.1 MGP_AJ_G0027762.1 mouse_genomes_project 3 113911872 113923508 + MGP_AJ_P0063373 Dph5 protein_coding protein_coding MGP_AJ_T0063374.1 MGP_AJ_G0027762.1 mouse_genomes_project 3 113911890 113944974 + MGP_AJ_P0063374 Dph5 protein_coding nonsense_mediated_decay MGP_AJ_T0063375.1 MGP_AJ_G0027762.1 mouse_genomes_project 3 113911898 113924874 + MGP_AJ_P0063375 Dph5 protein_coding protein_coding MGP_AJ_T0063376.1 MGP_AJ_G0027762.1 mouse_genomes_project 3 113911908 113939939 + MGP_AJ_P0063376 Dph5 protein_coding protein_coding MGP_AJ_T0063377.1 MGP_AJ_G0027762.1 mouse_genomes_project 3 113911919 113916000 + Dph5 protein_coding retained_intron MGP_AJ_T0063378.1 MGP_AJ_G0027762.1 mouse_genomes_project 3 113911920 113916715 + Dph5 protein_coding retained_intron MGP_AJ_T0061158.1 MGP_AJ_G0027247.1 mouse_genomes_project 3 65080587 65837655 + MGP_AJ_P0061158 Gm21949 protein_coding protein_coding MGP_AJ_T0007766.1 MGP_AJ_G0006350.1 mouse_genomes_project 3 145512682 145523847 + Gm36831 lincRNA lincRNA MGP_AJ_T0001158.1 MGP_AJ_G0001084.1 mouse_genomes_project 3 34989288 34990557 + TEC TEC MGP_AJ_T0001372.1 MGP_AJ_G0001295.1 mouse_genomes_project 3 145527372 145531880 - TEC TEC MGP_AJ_T0060441.1 MGP_AJ_G0027104.1 mouse_genomes_project 3 30011457 30136645 + MGP_AJ_P0060441 Usp13 protein_coding protein_coding MGP_AJ_T0060442.1 MGP_AJ_G0027104.1 mouse_genomes_project 3 30011482 30131610 + MGP_AJ_P0060442 Usp13 protein_coding protein_coding MGP_AJ_T0060443.1 MGP_AJ_G0027104.1 mouse_genomes_project 3 30011622 30113486 + MGP_AJ_P0060443 Usp13 protein_coding nonsense_mediated_decay MGP_AJ_T0060444.1 MGP_AJ_G0027104.1 mouse_genomes_project 3 30113455 30131618 + MGP_AJ_P0060444 Usp13 protein_coding protein_coding MGP_AJ_T0102008.1 MGP_AJ_G0039819.1 mouse_genomes_project 3 57083941 57122020 + transcribed_unprocessed_pseudogene processed_transcript MGP_AJ_T0007629.1 MGP_AJ_G0006236.1 mouse_genomes_project 3 93172878 93176514 + Gm4349 lincRNA lincRNA MGP_AJ_T0102536.1 MGP_AJ_G0040278.1 mouse_genomes_project 3 61704861 61707163 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0101126.1 MGP_AJ_G0039092.1 mouse_genomes_project 3 62141990 62142116 - Gm25222 snoRNA snoRNA MGP_AJ_T0102569.1 MGP_AJ_G0040311.1 mouse_genomes_project 3 106006260 106008587 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0011530.1 MGP_AJ_G0009652.1 mouse_genomes_project 3 10966482 10966777 + Gm25981 misc_RNA misc_RNA MGP_AJ_T0061634.1 MGP_AJ_G0027359.1 mouse_genomes_project 3 85568700 85584865 - MGP_AJ_P0061634 Pmf1 protein_coding protein_coding MGP_AJ_T0061635.1 MGP_AJ_G0027359.1 mouse_genomes_project 3 85568700 85584860 - MGP_AJ_P0061635 Pmf1 protein_coding protein_coding MGP_AJ_T0061636.1 MGP_AJ_G0027359.1 mouse_genomes_project 3 85568936 85584799 - Pmf1 protein_coding processed_transcript MGP_AJ_T0061637.1 MGP_AJ_G0027359.1 mouse_genomes_project 3 85570300 85571278 - Pmf1 protein_coding retained_intron MGP_AJ_T0061638.1 MGP_AJ_G0027359.1 mouse_genomes_project 3 85570625 85584820 - MGP_AJ_P0061638 Pmf1 protein_coding nonsense_mediated_decay MGP_AJ_T0061639.1 MGP_AJ_G0027359.1 mouse_genomes_project 3 85571922 85574267 - Pmf1 protein_coding retained_intron MGP_AJ_T0061640.1 MGP_AJ_G0027359.1 mouse_genomes_project 3 85574089 85584842 - Pmf1 protein_coding retained_intron MGP_AJ_T0014182.1 MGP_AJ_G0012277.1 mouse_genomes_project 3 91012668 91013220 - processed_pseudogene processed_pseudogene MGP_AJ_T0063750.1 MGP_AJ_G0027829.1 mouse_genomes_project 3 127745911 127824237 - MGP_AJ_P0063750 Egf protein_coding protein_coding MGP_AJ_T0063751.1 MGP_AJ_G0027829.1 mouse_genomes_project 3 127745924 127793624 - MGP_AJ_P0063751 Egf protein_coding protein_coding MGP_AJ_T0063752.1 MGP_AJ_G0027829.1 mouse_genomes_project 3 127745926 127793614 - MGP_AJ_P0063752 Egf protein_coding protein_coding MGP_AJ_T0063753.1 MGP_AJ_G0027829.1 mouse_genomes_project 3 127746683 127749897 - Egf protein_coding retained_intron MGP_AJ_T0063754.1 MGP_AJ_G0027829.1 mouse_genomes_project 3 127754610 127761659 - Egf protein_coding retained_intron MGP_AJ_T0063755.1 MGP_AJ_G0027829.1 mouse_genomes_project 3 127760940 127763855 - Egf protein_coding retained_intron MGP_AJ_T0063756.1 MGP_AJ_G0027829.1 mouse_genomes_project 3 127768038 127793623 - MGP_AJ_P0063756 Egf protein_coding nonsense_mediated_decay MGP_AJ_T0063757.1 MGP_AJ_G0027829.1 mouse_genomes_project 3 127803984 127824237 - Egf protein_coding retained_intron MGP_AJ_T0063758.1 MGP_AJ_G0027829.1 mouse_genomes_project 3 127805456 127824237 - Egf protein_coding processed_transcript MGP_AJ_T0060534.1 MGP_AJ_G0027118.1 mouse_genomes_project 3 33594406 33621182 - MGP_AJ_P0060534 Anxa5 protein_coding protein_coding MGP_AJ_T0060535.1 MGP_AJ_G0027118.1 mouse_genomes_project 3 33594647 33597818 - Anxa5 protein_coding retained_intron MGP_AJ_T0060536.1 MGP_AJ_G0027118.1 mouse_genomes_project 3 33597694 33620947 - MGP_AJ_P0060536 Anxa5 protein_coding protein_coding MGP_AJ_T0064168.1 MGP_AJ_G0027911.1 mouse_genomes_project 3 142832294 142916810 - Clca3a2 protein_coding retained_intron MGP_AJ_T0064169.1 MGP_AJ_G0027911.1 mouse_genomes_project 3 142874076 142931971 - MGP_AJ_P0064169 Clca3a2 protein_coding protein_coding MGP_AJ_T0064170.1 MGP_AJ_G0027911.1 mouse_genomes_project 3 142881357 142884692 - MGP_AJ_P0064170 Clca3a2 protein_coding protein_coding MGP_AJ_T0064171.1 MGP_AJ_G0027911.1 mouse_genomes_project 3 142881584 142919787 - MGP_AJ_P0064171 Clca3a2 protein_coding protein_coding MGP_AJ_T0014210.1 MGP_AJ_G0012305.1 mouse_genomes_project 3 97439149 97439804 - processed_pseudogene processed_pseudogene MGP_AJ_T0063114.1 MGP_AJ_G0027702.1 mouse_genomes_project 3 105247109 105257608 - MGP_AJ_P0063114 Cym protein_coding protein_coding MGP_AJ_T0060641.1 MGP_AJ_G0027139.1 mouse_genomes_project 3 37761166 37773748 + MGP_AJ_P0060641 Hspa4l protein_coding protein_coding MGP_AJ_T0060642.1 MGP_AJ_G0027139.1 mouse_genomes_project 3 37762056 37800103 + MGP_AJ_P0060642 Hspa4l protein_coding protein_coding MGP_AJ_T0060643.1 MGP_AJ_G0027139.1 mouse_genomes_project 3 37762104 37815237 + MGP_AJ_P0060643 Hspa4l protein_coding protein_coding MGP_AJ_T0060644.1 MGP_AJ_G0027139.1 mouse_genomes_project 3 37762158 37779381 + MGP_AJ_P0060644 Hspa4l protein_coding protein_coding MGP_AJ_T0060645.1 MGP_AJ_G0027139.1 mouse_genomes_project 3 37762257 37775275 + Hspa4l protein_coding retained_intron MGP_AJ_T0060646.1 MGP_AJ_G0027139.1 mouse_genomes_project 3 37762542 37808337 + MGP_AJ_P0060646 Hspa4l protein_coding protein_coding MGP_AJ_T0060647.1 MGP_AJ_G0027139.1 mouse_genomes_project 3 37791144 37800345 + Hspa4l protein_coding retained_intron MGP_AJ_T0060648.1 MGP_AJ_G0027139.1 mouse_genomes_project 3 37802513 37805323 + Hspa4l protein_coding retained_intron MGP_AJ_T0004280.1 MGP_AJ_G0003758.1 mouse_genomes_project 3 86638149 86645294 + Gm15417 antisense antisense MGP_AJ_T0004281.1 MGP_AJ_G0003758.1 mouse_genomes_project 3 86638269 86645294 + Gm15417 antisense antisense MGP_AJ_T0004282.1 MGP_AJ_G0003758.1 mouse_genomes_project 3 86641356 86645844 + Gm15417 antisense antisense MGP_AJ_T0004283.1 MGP_AJ_G0003758.1 mouse_genomes_project 3 86643062 86645216 + Gm15417 antisense antisense MGP_AJ_T0062707.1 MGP_AJ_G0027607.1 mouse_genomes_project 3 95489616 95691205 - MGP_AJ_P0062707 Pde4dip protein_coding protein_coding MGP_AJ_T0062708.1 MGP_AJ_G0027607.1 mouse_genomes_project 3 95489622 95494816 - Pde4dip protein_coding processed_transcript MGP_AJ_T0062709.1 MGP_AJ_G0027607.1 mouse_genomes_project 3 95489657 95691205 - MGP_AJ_P0062709 Pde4dip protein_coding protein_coding MGP_AJ_T0062710.1 MGP_AJ_G0027607.1 mouse_genomes_project 3 95494773 95497060 - Pde4dip protein_coding processed_transcript MGP_AJ_T0062711.1 MGP_AJ_G0027607.1 mouse_genomes_project 3 95538490 95567664 - MGP_AJ_P0062711 Pde4dip protein_coding protein_coding MGP_AJ_T0062712.1 MGP_AJ_G0027607.1 mouse_genomes_project 3 95540453 95567586 - MGP_AJ_P0062712 Pde4dip protein_coding nonsense_mediated_decay MGP_AJ_T0062713.1 MGP_AJ_G0027607.1 mouse_genomes_project 3 95546363 95670756 - MGP_AJ_P0062713 Pde4dip protein_coding protein_coding MGP_AJ_T0062714.1 MGP_AJ_G0027607.1 mouse_genomes_project 3 95597973 95626207 - MGP_AJ_P0062714 Pde4dip protein_coding protein_coding MGP_AJ_T0062715.1 MGP_AJ_G0027607.1 mouse_genomes_project 3 95622562 95670705 - Pde4dip protein_coding retained_intron MGP_AJ_T0098985.1 MGP_AJ_G0036962.1 mouse_genomes_project 3 101724858 101725924 - Gm43387 sense_intronic sense_intronic MGP_AJ_T0063257.1 MGP_AJ_G0027739.1 mouse_genomes_project 3 106598857 106603373 + 1700013F07Rik protein_coding processed_transcript MGP_AJ_T0063258.1 MGP_AJ_G0027739.1 mouse_genomes_project 3 106603213 106608697 + 1700013F07Rik protein_coding processed_transcript MGP_AJ_T0063259.1 MGP_AJ_G0027739.1 mouse_genomes_project 3 106603220 106610339 + MGP_AJ_P0063259 1700013F07Rik protein_coding protein_coding MGP_AJ_T0010536.1 MGP_AJ_G0008658.1 mouse_genomes_project 3 93981412 93981553 + Gm44492 miRNA miRNA MGP_AJ_T0014106.1 MGP_AJ_G0012201.1 mouse_genomes_project 3 66622994 66624354 - processed_pseudogene processed_pseudogene MGP_AJ_T0060069.1 MGP_AJ_G0027020.1 mouse_genomes_project 3 6345008 6382035 + MGP_AJ_P0060069 Zbtb10 protein_coding protein_coding MGP_AJ_T0062167.1 MGP_AJ_G0027466.1 mouse_genomes_project 3 90008811 90010755 - MGP_AJ_P0062167 Sprr1a protein_coding protein_coding MGP_AJ_T0004239.1 MGP_AJ_G0003727.1 mouse_genomes_project 3 50069366 50072538 - Gm42901 antisense antisense MGP_AJ_T0007665.1 MGP_AJ_G0006266.1 mouse_genomes_project 3 105873929 105887552 - Gm36211 lincRNA lincRNA MGP_AJ_T0001363.1 MGP_AJ_G0001286.1 mouse_genomes_project 3 133902940 133905191 + TEC TEC MGP_AJ_T0001369.1 MGP_AJ_G0001292.1 mouse_genomes_project 3 139721797 139724409 + TEC TEC MGP_AJ_T0062180.1 MGP_AJ_G0027477.1 mouse_genomes_project 3 90213418 90215130 - MGP_AJ_P0062180 Lce1d protein_coding protein_coding MGP_AJ_T0001254.1 MGP_AJ_G0001178.1 mouse_genomes_project 3 81989403 81993291 + TEC TEC MGP_AJ_T0010545.1 MGP_AJ_G0008667.1 mouse_genomes_project 3 116504746 116504856 + Gm24155 miRNA miRNA MGP_AJ_T0062630.1 MGP_AJ_G0027591.1 mouse_genomes_project 3 94465661 94475210 + MGP_AJ_P0062630 Pias3 protein_coding protein_coding MGP_AJ_T0062631.1 MGP_AJ_G0027591.1 mouse_genomes_project 3 94465719 94474722 + MGP_AJ_P0062631 Pias3 protein_coding nonsense_mediated_decay MGP_AJ_T0062632.1 MGP_AJ_G0027591.1 mouse_genomes_project 3 94466352 94468952 + MGP_AJ_P0062632 Pias3 protein_coding protein_coding MGP_AJ_T0062633.1 MGP_AJ_G0027591.1 mouse_genomes_project 3 94466359 94475318 + MGP_AJ_P0062633 Pias3 protein_coding protein_coding MGP_AJ_T0062634.1 MGP_AJ_G0027591.1 mouse_genomes_project 3 94466393 94475221 + MGP_AJ_P0062634 Pias3 protein_coding protein_coding MGP_AJ_T0062635.1 MGP_AJ_G0027591.1 mouse_genomes_project 3 94466409 94469243 + Pias3 protein_coding retained_intron MGP_AJ_T0062636.1 MGP_AJ_G0027591.1 mouse_genomes_project 3 94466470 94470953 + MGP_AJ_P0062636 Pias3 protein_coding nonsense_mediated_decay MGP_AJ_T0062637.1 MGP_AJ_G0027591.1 mouse_genomes_project 3 94469738 94473068 + Pias3 protein_coding retained_intron MGP_AJ_T0062638.1 MGP_AJ_G0027591.1 mouse_genomes_project 3 94470614 94473133 + Pias3 protein_coding retained_intron MGP_AJ_T0062639.1 MGP_AJ_G0027591.1 mouse_genomes_project 3 94473412 94474381 + MGP_AJ_P0062639 Pias3 protein_coding protein_coding MGP_AJ_T0099872.1 MGP_AJ_G0037838.1 mouse_genomes_project 3 120557930 120558086 + Gm25153 snRNA snRNA MGP_AJ_T0061369.1 MGP_AJ_G0027299.1 mouse_genomes_project 3 80216676 80454124 + MGP_AJ_P0061369 Dchs2 protein_coding protein_coding MGP_AJ_T0061212.1 MGP_AJ_G0027259.1 mouse_genomes_project 3 66909240 66911716 + Nmd3 protein_coding retained_intron MGP_AJ_T0061213.1 MGP_AJ_G0027259.1 mouse_genomes_project 3 66909240 66943325 + MGP_AJ_P0061213 Nmd3 protein_coding protein_coding MGP_AJ_T0061214.1 MGP_AJ_G0027259.1 mouse_genomes_project 3 66909287 66922136 + MGP_AJ_P0061214 Nmd3 protein_coding nonsense_mediated_decay MGP_AJ_T0061215.1 MGP_AJ_G0027259.1 mouse_genomes_project 3 66909338 66917622 + MGP_AJ_P0061215 Nmd3 protein_coding nonsense_mediated_decay MGP_AJ_T0061216.1 MGP_AJ_G0027259.1 mouse_genomes_project 3 66909345 66919062 + Nmd3 protein_coding retained_intron MGP_AJ_T0061217.1 MGP_AJ_G0027259.1 mouse_genomes_project 3 66909510 66913497 + MGP_AJ_P0061217 Nmd3 protein_coding protein_coding MGP_AJ_T0061218.1 MGP_AJ_G0027259.1 mouse_genomes_project 3 66911497 66926852 + Nmd3 protein_coding retained_intron MGP_AJ_T0061219.1 MGP_AJ_G0027259.1 mouse_genomes_project 3 66933212 66935843 + Nmd3 protein_coding retained_intron MGP_AJ_T0014314.1 MGP_AJ_G0012409.1 mouse_genomes_project 3 128994751 128996052 - processed_pseudogene processed_pseudogene MGP_AJ_T0060983.1 MGP_AJ_G0027202.1 mouse_genomes_project 3 56157189 56162563 - MGP_AJ_P0060983 Gpr171 protein_coding protein_coding MGP_AJ_T0007494.1 MGP_AJ_G0006137.1 mouse_genomes_project 3 30870951 30926612 - lincRNA lincRNA MGP_AJ_T0062190.1 MGP_AJ_G0027486.1 mouse_genomes_project 3 90349464 90353680 - MGP_AJ_P0062190 Kprp protein_coding protein_coding MGP_AJ_T0098958.1 MGP_AJ_G0036936.1 mouse_genomes_project 3 82680486 82698369 - Gm15535 sense_intronic sense_intronic MGP_AJ_T0098959.1 MGP_AJ_G0036936.1 mouse_genomes_project 3 82682622 82698275 - Gm15535 sense_intronic sense_intronic MGP_AJ_T0063872.1 MGP_AJ_G0027854.1 mouse_genomes_project 3 131088868 131108129 + MGP_AJ_P0063872 Ints12 protein_coding protein_coding MGP_AJ_T0063873.1 MGP_AJ_G0027854.1 mouse_genomes_project 3 131088966 131099124 + Ints12 protein_coding retained_intron MGP_AJ_T0063874.1 MGP_AJ_G0027854.1 mouse_genomes_project 3 131097416 131104226 + Ints12 protein_coding processed_transcript MGP_AJ_T0007758.1 MGP_AJ_G0006343.1 mouse_genomes_project 3 142162528 142197579 - Gm42709 lincRNA lincRNA MGP_AJ_T0063507.1 MGP_AJ_G0027787.1 mouse_genomes_project 3 119359747 119388170 + MGP_AJ_P0063507 Alg14 protein_coding nonsense_mediated_decay MGP_AJ_T0063508.1 MGP_AJ_G0027787.1 mouse_genomes_project 3 119359797 119430591 + MGP_AJ_P0063508 Alg14 protein_coding protein_coding MGP_AJ_T0063509.1 MGP_AJ_G0027787.1 mouse_genomes_project 3 119359839 119388632 + MGP_AJ_P0063509 Alg14 protein_coding protein_coding MGP_AJ_T0014325.1 MGP_AJ_G0012420.1 mouse_genomes_project 3 132992168 132993470 + processed_pseudogene processed_pseudogene MGP_AJ_T0064568.1 MGP_AJ_G0027977.1 mouse_genomes_project 3 157854695 157881280 + MGP_AJ_P0064568 Rpe65 protein_coding protein_coding MGP_AJ_T0064569.1 MGP_AJ_G0027977.1 mouse_genomes_project 3 157854738 157862893 + MGP_AJ_P0064569 Rpe65 protein_coding nonsense_mediated_decay MGP_AJ_T0064570.1 MGP_AJ_G0027977.1 mouse_genomes_project 3 157854753 157880736 + MGP_AJ_P0064570 Rpe65 protein_coding protein_coding MGP_AJ_T0061580.1 MGP_AJ_G0027348.1 mouse_genomes_project 3 85288284 85318947 + MGP_AJ_P0061580 Mef2d protein_coding protein_coding MGP_AJ_T0061581.1 MGP_AJ_G0027348.1 mouse_genomes_project 3 85288328 85316792 + MGP_AJ_P0061581 Mef2d protein_coding protein_coding MGP_AJ_T0061582.1 MGP_AJ_G0027348.1 mouse_genomes_project 3 85288484 85315517 + MGP_AJ_P0061582 Mef2d protein_coding protein_coding MGP_AJ_T0061583.1 MGP_AJ_G0027348.1 mouse_genomes_project 3 85288484 85315517 + MGP_AJ_P0061583 Mef2d protein_coding protein_coding MGP_AJ_T0061584.1 MGP_AJ_G0027348.1 mouse_genomes_project 3 85288486 85302746 + Mef2d protein_coding retained_intron MGP_AJ_T0061585.1 MGP_AJ_G0027348.1 mouse_genomes_project 3 85309702 85315647 + Mef2d protein_coding processed_transcript MGP_AJ_T0061586.1 MGP_AJ_G0027348.1 mouse_genomes_project 3 85315113 85315768 + Mef2d protein_coding processed_transcript MGP_AJ_T0013931.1 MGP_AJ_G0012026.1 mouse_genomes_project 3 10958939 10960296 - processed_pseudogene processed_pseudogene MGP_AJ_T0014053.1 MGP_AJ_G0012148.1 mouse_genomes_project 3 53833620 53834091 - processed_pseudogene processed_pseudogene MGP_AJ_T0014009.1 MGP_AJ_G0012104.1 mouse_genomes_project 3 36964475 36964755 - processed_pseudogene processed_pseudogene MGP_AJ_T0063203.1 MGP_AJ_G0027726.1 mouse_genomes_project 3 106164892 106205044 - MGP_AJ_P0063203 Gnai3 protein_coding protein_coding MGP_AJ_T0061087.1 MGP_AJ_G0027229.1 mouse_genomes_project 3 61454206 61496052 - MGP_AJ_P0061087 Vmn2r3 protein_coding protein_coding MGP_AJ_T0061088.1 MGP_AJ_G0027229.1 mouse_genomes_project 3 61454206 61496215 - MGP_AJ_P0061088 Vmn2r3 protein_coding protein_coding MGP_AJ_T0062808.1 MGP_AJ_G0027637.1 mouse_genomes_project 3 99786918 99848659 - MGP_AJ_P0062808 Slc22a15 protein_coding protein_coding MGP_AJ_T0062809.1 MGP_AJ_G0027637.1 mouse_genomes_project 3 99790078 99848715 - MGP_AJ_P0062809 Slc22a15 protein_coding protein_coding MGP_AJ_T0062810.1 MGP_AJ_G0027637.1 mouse_genomes_project 3 99790102 99821632 - Slc22a15 protein_coding processed_transcript MGP_AJ_T0062811.1 MGP_AJ_G0027637.1 mouse_genomes_project 3 99793646 99809041 - Slc22a15 protein_coding retained_intron MGP_AJ_T0062812.1 MGP_AJ_G0027637.1 mouse_genomes_project 3 99794884 99848645 - MGP_AJ_P0062812 Slc22a15 protein_coding nonsense_mediated_decay MGP_AJ_T0062813.1 MGP_AJ_G0027637.1 mouse_genomes_project 3 99802794 99807768 - Slc22a15 protein_coding retained_intron MGP_AJ_T0062814.1 MGP_AJ_G0027637.1 mouse_genomes_project 3 99845270 99848719 - Slc22a15 protein_coding processed_transcript MGP_AJ_T0062211.1 MGP_AJ_G0027500.1 mouse_genomes_project 3 91046178 91049405 + MGP_AJ_P0062211 Tchhl1 protein_coding protein_coding MGP_AJ_T0063785.1 MGP_AJ_G0027836.1 mouse_genomes_project 3 127985822 128040515 - MGP_AJ_P0063785 Ccdc109b protein_coding protein_coding MGP_AJ_T0063786.1 MGP_AJ_G0027836.1 mouse_genomes_project 3 127985837 128040357 - MGP_AJ_P0063786 Ccdc109b protein_coding protein_coding MGP_AJ_T0063787.1 MGP_AJ_G0027836.1 mouse_genomes_project 3 127987942 128040298 - MGP_AJ_P0063787 Ccdc109b protein_coding protein_coding MGP_AJ_T0063788.1 MGP_AJ_G0027836.1 mouse_genomes_project 3 127997117 128040433 - MGP_AJ_P0063788 Ccdc109b protein_coding nonsense_mediated_decay MGP_AJ_T0004311.1 MGP_AJ_G0003778.1 mouse_genomes_project 3 94769627 94771677 - 9230114J08Rik antisense antisense MGP_AJ_T0098838.1 MGP_AJ_G0036822.1 mouse_genomes_project 3 66273180 66273529 - Gm22009 scaRNA scaRNA MGP_AJ_T0007579.1 MGP_AJ_G0006202.1 mouse_genomes_project 3 71192906 71200947 - Gm20356 lincRNA lincRNA MGP_AJ_T0001246.1 MGP_AJ_G0001170.1 mouse_genomes_project 3 73095262 73097439 + TEC TEC MGP_AJ_T0011554.1 MGP_AJ_G0009676.1 mouse_genomes_project 3 153327917 153328028 + Gm26456 misc_RNA misc_RNA MGP_AJ_T0099820.1 MGP_AJ_G0037786.1 mouse_genomes_project 3 46010854 46011019 + Gm23511 snRNA snRNA MGP_AJ_T0011534.1 MGP_AJ_G0009656.1 mouse_genomes_project 3 27720015 27720427 - 1600017P15Rik misc_RNA misc_RNA MGP_AJ_T0013962.1 MGP_AJ_G0012057.1 mouse_genomes_project 3 19498615 19499519 - processed_pseudogene processed_pseudogene MGP_AJ_T0001335.1 MGP_AJ_G0001259.1 mouse_genomes_project 3 125424287 125427486 - TEC TEC MGP_AJ_T0004328.1 MGP_AJ_G0003789.1 mouse_genomes_project 3 102933322 102943304 + Gm42956 antisense antisense MGP_AJ_T0001166.1 MGP_AJ_G0001092.1 mouse_genomes_project 3 38811680 38814290 + TEC TEC MGP_AJ_T0062803.1 MGP_AJ_G0027635.1 mouse_genomes_project 3 99505583 99534057 - MGP_AJ_P0062803 Atp1a1 protein_coding protein_coding MGP_AJ_T0062804.1 MGP_AJ_G0027635.1 mouse_genomes_project 3 99505680 99506927 - Atp1a1 protein_coding retained_intron MGP_AJ_T0062805.1 MGP_AJ_G0027635.1 mouse_genomes_project 3 99515156 99518398 - Atp1a1 protein_coding retained_intron MGP_AJ_T0061075.1 MGP_AJ_G0027223.1 mouse_genomes_project 3 61078943 61093534 - MGP_AJ_P0061075 E130311K13Rik protein_coding protein_coding MGP_AJ_T0061076.1 MGP_AJ_G0027223.1 mouse_genomes_project 3 61088080 61093453 - E130311K13Rik protein_coding processed_transcript MGP_AJ_T0061077.1 MGP_AJ_G0027223.1 mouse_genomes_project 3 61090855 61093453 - E130311K13Rik protein_coding retained_intron MGP_AJ_T0063026.1 MGP_AJ_G0027679.1 mouse_genomes_project 3 103652283 103669266 + MGP_AJ_P0063026 Fam212b protein_coding protein_coding MGP_AJ_T0063027.1 MGP_AJ_G0027679.1 mouse_genomes_project 3 103653143 103666572 + MGP_AJ_P0063027 Fam212b protein_coding protein_coding MGP_AJ_T0061188.1 MGP_AJ_G0027253.1 mouse_genomes_project 3 66190436 66220373 + MGP_AJ_P0061188 Smc4 protein_coding protein_coding MGP_AJ_T0061189.1 MGP_AJ_G0027253.1 mouse_genomes_project 3 66190668 66203891 + MGP_AJ_P0061189 Smc4 protein_coding protein_coding MGP_AJ_T0061190.1 MGP_AJ_G0027253.1 mouse_genomes_project 3 66190689 66220368 + MGP_AJ_P0061190 Smc4 protein_coding protein_coding MGP_AJ_T0061191.1 MGP_AJ_G0027253.1 mouse_genomes_project 3 66190706 66220373 + MGP_AJ_P0061191 Smc4 protein_coding nonsense_mediated_decay MGP_AJ_T0061192.1 MGP_AJ_G0027253.1 mouse_genomes_project 3 66190713 66214192 + MGP_AJ_P0061192 Smc4 protein_coding nonsense_mediated_decay MGP_AJ_T0061193.1 MGP_AJ_G0027253.1 mouse_genomes_project 3 66202272 66203956 + Smc4 protein_coding retained_intron MGP_AJ_T0061194.1 MGP_AJ_G0027253.1 mouse_genomes_project 3 66202478 66205100 + Smc4 protein_coding processed_transcript MGP_AJ_T0061195.1 MGP_AJ_G0027253.1 mouse_genomes_project 3 66204694 66207176 + Smc4 protein_coding retained_intron MGP_AJ_T0061196.1 MGP_AJ_G0027253.1 mouse_genomes_project 3 66207823 66210054 + Smc4 protein_coding retained_intron MGP_AJ_T0061197.1 MGP_AJ_G0027253.1 mouse_genomes_project 3 66209946 66213635 + MGP_AJ_P0061197 Smc4 protein_coding nonsense_mediated_decay MGP_AJ_T0061198.1 MGP_AJ_G0027253.1 mouse_genomes_project 3 66216098 66218826 + Smc4 protein_coding retained_intron MGP_AJ_T0001266.1 MGP_AJ_G0001190.1 mouse_genomes_project 3 93339889 93341493 + TEC TEC MGP_AJ_T0001116.1 MGP_AJ_G0001042.1 mouse_genomes_project 3 10396899 10400709 + TEC TEC MGP_AJ_T0018018.1 MGP_AJ_G0015506.1 mouse_genomes_project 3 147136731 147138677 + Gm43572 processed_transcript processed_transcript MGP_AJ_T0060023.1 MGP_AJ_G0027007.1 mouse_genomes_project 3 594686 754017 + MGP_AJ_P0060023 Hnf4g protein_coding protein_coding MGP_AJ_T0060024.1 MGP_AJ_G0027007.1 mouse_genomes_project 3 730342 754225 + MGP_AJ_P0060024 Hnf4g protein_coding protein_coding MGP_AJ_T0007765.1 MGP_AJ_G0006349.1 mouse_genomes_project 3 145233942 145264084 + Gm29771 lincRNA lincRNA MGP_AJ_T0098968.1 MGP_AJ_G0036945.1 mouse_genomes_project 3 98405173 98407870 + Gm42868 sense_intronic sense_intronic MGP_AJ_T0014302.1 MGP_AJ_G0012397.1 mouse_genomes_project 3 124468425 124468633 + processed_pseudogene processed_pseudogene MGP_AJ_T0013983.1 MGP_AJ_G0012078.1 mouse_genomes_project 3 31237034 31240769 - processed_pseudogene processed_pseudogene MGP_AJ_T0063367.1 MGP_AJ_G0027760.1 mouse_genomes_project 3 112921004 113133304 + MGP_AJ_P0063367 Olfm3 protein_coding protein_coding MGP_AJ_T0063368.1 MGP_AJ_G0027760.1 mouse_genomes_project 3 112921561 113128556 + MGP_AJ_P0063368 Olfm3 protein_coding protein_coding MGP_AJ_T0063369.1 MGP_AJ_G0027760.1 mouse_genomes_project 3 113088592 113132838 + MGP_AJ_P0063369 Olfm3 protein_coding protein_coding MGP_AJ_T0063443.1 MGP_AJ_G0027776.1 mouse_genomes_project 3 114769785 114832869 - MGP_AJ_P0063443 Agl protein_coding unknown_likely_coding MGP_AJ_T0063444.1 MGP_AJ_G0027776.1 mouse_genomes_project 3 114769798 114832974 - MGP_AJ_P0063444 Agl protein_coding protein_coding MGP_AJ_T0063445.1 MGP_AJ_G0027776.1 mouse_genomes_project 3 114772279 114832230 - MGP_AJ_P0063445 Agl protein_coding protein_coding MGP_AJ_T0063446.1 MGP_AJ_G0027776.1 mouse_genomes_project 3 114772823 114806331 - MGP_AJ_P0063446 Agl protein_coding protein_coding MGP_AJ_T0063447.1 MGP_AJ_G0027776.1 mouse_genomes_project 3 114777831 114832850 - MGP_AJ_P0063447 Agl protein_coding nonsense_mediated_decay MGP_AJ_T0063448.1 MGP_AJ_G0027776.1 mouse_genomes_project 3 114784937 114832937 - MGP_AJ_P0063448 Agl protein_coding protein_coding MGP_AJ_T0063449.1 MGP_AJ_G0027776.1 mouse_genomes_project 3 114805093 114806831 - MGP_AJ_P0063449 Agl protein_coding protein_coding MGP_AJ_T0063450.1 MGP_AJ_G0027776.1 mouse_genomes_project 3 114815868 114832839 - Agl protein_coding retained_intron MGP_AJ_T0063451.1 MGP_AJ_G0027776.1 mouse_genomes_project 3 114817204 114832659 - MGP_AJ_P0063451 Agl protein_coding protein_coding MGP_AJ_T0010521.1 MGP_AJ_G0008643.1 mouse_genomes_project 3 85365049 85365136 + Mir3093 miRNA miRNA MGP_AJ_T0060130.1 MGP_AJ_G0027040.1 mouse_genomes_project 3 11757741 11778993 + MGP_AJ_P0060130 Car13 protein_coding protein_coding MGP_AJ_T0014080.1 MGP_AJ_G0012175.1 mouse_genomes_project 3 60106700 60107450 - processed_pseudogene processed_pseudogene MGP_AJ_T0061538.1 MGP_AJ_G0027338.1 mouse_genomes_project 3 85065365 85072673 - Rrnad1 protein_coding retained_intron MGP_AJ_T0061539.1 MGP_AJ_G0027338.1 mouse_genomes_project 3 85065365 85072673 - MGP_AJ_P0061539 Rrnad1 protein_coding nonsense_mediated_decay MGP_AJ_T0061540.1 MGP_AJ_G0027338.1 mouse_genomes_project 3 85065671 85072690 - MGP_AJ_P0061540 Rrnad1 protein_coding protein_coding MGP_AJ_T0061541.1 MGP_AJ_G0027338.1 mouse_genomes_project 3 85066079 85071907 - Rrnad1 protein_coding retained_intron MGP_AJ_T0061542.1 MGP_AJ_G0027338.1 mouse_genomes_project 3 85066421 85070804 - MGP_AJ_P0061542 Rrnad1 protein_coding protein_coding MGP_AJ_T0061543.1 MGP_AJ_G0027338.1 mouse_genomes_project 3 85066422 85068039 - Rrnad1 protein_coding processed_transcript MGP_AJ_T0061544.1 MGP_AJ_G0027338.1 mouse_genomes_project 3 85066426 85072690 - Rrnad1 protein_coding retained_intron MGP_AJ_T0061545.1 MGP_AJ_G0027338.1 mouse_genomes_project 3 85066426 85073263 - Rrnad1 protein_coding retained_intron MGP_AJ_T0061546.1 MGP_AJ_G0027338.1 mouse_genomes_project 3 85066546 85073129 - MGP_AJ_P0061546 Rrnad1 protein_coding protein_coding MGP_AJ_T0061547.1 MGP_AJ_G0027338.1 mouse_genomes_project 3 85067816 85069638 - Rrnad1 protein_coding retained_intron MGP_AJ_T0061548.1 MGP_AJ_G0027338.1 mouse_genomes_project 3 85067989 85070254 - Rrnad1 protein_coding processed_transcript MGP_AJ_T0061549.1 MGP_AJ_G0027338.1 mouse_genomes_project 3 85068019 85072684 - MGP_AJ_P0061549 Rrnad1 protein_coding nonsense_mediated_decay MGP_AJ_T0014255.1 MGP_AJ_G0012350.1 mouse_genomes_project 3 109359333 109360861 - processed_pseudogene processed_pseudogene MGP_AJ_T0014306.1 MGP_AJ_G0012401.1 mouse_genomes_project 3 127010721 127012041 - processed_pseudogene processed_pseudogene MGP_AJ_T0007711.1 MGP_AJ_G0006302.1 mouse_genomes_project 3 128988980 128990335 - Gm43349 lincRNA lincRNA MGP_AJ_T0062213.1 MGP_AJ_G0027502.1 mouse_genomes_project 3 91132856 91147871 + MGP_AJ_P0062213 S100a10 protein_coding protein_coding MGP_AJ_T0062214.1 MGP_AJ_G0027502.1 mouse_genomes_project 3 91132939 91141562 + S100a10 protein_coding retained_intron MGP_AJ_T0062215.1 MGP_AJ_G0027502.1 mouse_genomes_project 3 91140783 91147678 + MGP_AJ_P0062215 S100a10 protein_coding protein_coding MGP_AJ_T0099010.1 MGP_AJ_G0036987.1 mouse_genomes_project 3 103736409 103738098 - Gm43331 sense_intronic sense_intronic MGP_AJ_T0014300.1 MGP_AJ_G0012395.1 mouse_genomes_project 3 123052461 123053473 - processed_pseudogene processed_pseudogene MGP_AJ_T0061438.1 MGP_AJ_G0027316.1 mouse_genomes_project 3 83114446 83123151 - MGP_AJ_P0061438 Prss48 protein_coding protein_coding MGP_AJ_T0001168.1 MGP_AJ_G0001094.1 mouse_genomes_project 3 39622826 39623371 + TEC TEC MGP_AJ_T0007703.1 MGP_AJ_G0006296.1 mouse_genomes_project 3 127121141 127123881 - Gm28543 lincRNA lincRNA MGP_AJ_T0062128.1 MGP_AJ_G0027439.1 mouse_genomes_project 3 87900273 87902580 + MGP_AJ_P0062128 S100a4 protein_coding protein_coding MGP_AJ_T0062129.1 MGP_AJ_G0027439.1 mouse_genomes_project 3 87901445 87902368 + MGP_AJ_P0062129 S100a4 protein_coding protein_coding MGP_AJ_T0007679.1 MGP_AJ_G0006279.1 mouse_genomes_project 3 115307803 115308492 + Gm42891 lincRNA lincRNA MGP_AJ_T0060750.1 MGP_AJ_G0027154.1 mouse_genomes_project 3 48261238 48351780 - MGP_AJ_P0060750 Elf2 protein_coding protein_coding MGP_AJ_T0060751.1 MGP_AJ_G0027154.1 mouse_genomes_project 3 48263748 48336410 - MGP_AJ_P0060751 Elf2 protein_coding nonsense_mediated_decay MGP_AJ_T0060752.1 MGP_AJ_G0027154.1 mouse_genomes_project 3 48263749 48351761 - MGP_AJ_P0060752 Elf2 protein_coding protein_coding MGP_AJ_T0060753.1 MGP_AJ_G0027154.1 mouse_genomes_project 3 48264181 48285863 - MGP_AJ_P0060753 Elf2 protein_coding protein_coding MGP_AJ_T0060754.1 MGP_AJ_G0027154.1 mouse_genomes_project 3 48264183 48286023 - MGP_AJ_P0060754 Elf2 protein_coding protein_coding MGP_AJ_T0060755.1 MGP_AJ_G0027154.1 mouse_genomes_project 3 48264183 48285962 - MGP_AJ_P0060755 Elf2 protein_coding protein_coding MGP_AJ_T0060756.1 MGP_AJ_G0027154.1 mouse_genomes_project 3 48264203 48336368 - MGP_AJ_P0060756 Elf2 protein_coding protein_coding MGP_AJ_T0060757.1 MGP_AJ_G0027154.1 mouse_genomes_project 3 48267203 48268760 - Elf2 protein_coding retained_intron MGP_AJ_T0060758.1 MGP_AJ_G0027154.1 mouse_genomes_project 3 48273438 48351775 - MGP_AJ_P0060758 Elf2 protein_coding nonsense_mediated_decay MGP_AJ_T0060759.1 MGP_AJ_G0027154.1 mouse_genomes_project 3 48273438 48285816 - MGP_AJ_P0060759 Elf2 protein_coding protein_coding MGP_AJ_T0060760.1 MGP_AJ_G0027154.1 mouse_genomes_project 3 48273454 48351678 - Elf2 protein_coding processed_transcript MGP_AJ_T0060761.1 MGP_AJ_G0027154.1 mouse_genomes_project 3 48273454 48285872 - MGP_AJ_P0060761 Elf2 protein_coding nonsense_mediated_decay MGP_AJ_T0060762.1 MGP_AJ_G0027154.1 mouse_genomes_project 3 48273618 48285892 - MGP_AJ_P0060762 Elf2 protein_coding protein_coding MGP_AJ_T0062747.1 MGP_AJ_G0027619.1 mouse_genomes_project 3 96728696 96737075 - MGP_AJ_P0062747 Hsd3b1 protein_coding protein_coding MGP_AJ_T0062748.1 MGP_AJ_G0027619.1 mouse_genomes_project 3 96728698 96737075 - MGP_AJ_P0062748 Hsd3b1 protein_coding protein_coding MGP_AJ_T0004231.1 MGP_AJ_G0003719.1 mouse_genomes_project 3 34485746 34500215 - Fgf2os antisense antisense MGP_AJ_T0101778.1 MGP_AJ_G0039699.1 mouse_genomes_project 3 18904964 18953846 - transcribed_processed_pseudogene processed_transcript MGP_AJ_T0101779.1 MGP_AJ_G0039699.1 mouse_genomes_project 3 18905162 18914179 - transcribed_processed_pseudogene processed_transcript MGP_AJ_T0101780.1 MGP_AJ_G0039699.1 mouse_genomes_project 3 18905352 18905517 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0061523.1 MGP_AJ_G0027334.1 mouse_genomes_project 3 84986843 84992868 + MGP_AJ_P0061523 Sh2d2a protein_coding protein_coding MGP_AJ_T0061524.1 MGP_AJ_G0027334.1 mouse_genomes_project 3 84987093 84995842 + MGP_AJ_P0061524 Sh2d2a protein_coding protein_coding MGP_AJ_T0061525.1 MGP_AJ_G0027334.1 mouse_genomes_project 3 84987099 84990033 + Sh2d2a protein_coding retained_intron MGP_AJ_T0007632.1 MGP_AJ_G0006239.1 mouse_genomes_project 3 94103341 94118064 + lincRNA lincRNA MGP_AJ_T0007635.1 MGP_AJ_G0006239.1 mouse_genomes_project 3 94107973 94118063 + lincRNA lincRNA MGP_AJ_T0014359.1 MGP_AJ_G0012454.1 mouse_genomes_project 3 142493398 142493864 - processed_pseudogene processed_pseudogene MGP_AJ_T0014058.1 MGP_AJ_G0012153.1 mouse_genomes_project 3 54760136 54760613 - processed_pseudogene processed_pseudogene MGP_AJ_T0007763.1 MGP_AJ_G0006347.1 mouse_genomes_project 3 144178376 144179779 + Gm43861 lincRNA lincRNA MGP_AJ_T0013926.1 MGP_AJ_G0012021.1 mouse_genomes_project 3 10006340 10007304 - processed_pseudogene processed_pseudogene MGP_AJ_T0001320.1 MGP_AJ_G0001244.1 mouse_genomes_project 3 124629203 124633708 + TEC TEC MGP_AJ_T0014163.1 MGP_AJ_G0012258.1 mouse_genomes_project 3 87077177 87077703 + processed_pseudogene processed_pseudogene MGP_AJ_T0063107.1 MGP_AJ_G0027698.1 mouse_genomes_project 3 104858536 104859563 - MGP_AJ_P0063107 Olfr266 protein_coding protein_coding MGP_AJ_T0007672.1 MGP_AJ_G0006273.1 mouse_genomes_project 3 113734538 113736116 + Gm9889 lincRNA pseudogene MGP_AJ_T0007673.1 MGP_AJ_G0006273.1 mouse_genomes_project 3 113734538 113736117 + Gm9889 lincRNA lincRNA MGP_AJ_T0014078.1 MGP_AJ_G0012173.1 mouse_genomes_project 3 59284010 59286249 - processed_pseudogene processed_pseudogene MGP_AJ_T0007625.1 MGP_AJ_G0006232.1 mouse_genomes_project 3 90886485 91042793 - lincRNA lincRNA MGP_AJ_T0013960.1 MGP_AJ_G0012055.1 mouse_genomes_project 3 18799577 18800349 + processed_pseudogene processed_pseudogene MGP_AJ_T0013971.1 MGP_AJ_G0012066.1 mouse_genomes_project 3 24443179 24443448 - processed_pseudogene processed_pseudogene MGP_AJ_T0007567.1 MGP_AJ_G0006191.1 mouse_genomes_project 3 60609788 60628193 + Gm34240 lincRNA lincRNA MGP_AJ_T0014288.1 MGP_AJ_G0012383.1 mouse_genomes_project 3 120241030 120241442 - processed_pseudogene processed_pseudogene MGP_AJ_T0004264.1 MGP_AJ_G0003747.1 mouse_genomes_project 3 79969531 80036451 + Rbm46os antisense antisense MGP_AJ_T0004265.1 MGP_AJ_G0003747.1 mouse_genomes_project 3 79969531 80034533 + Rbm46os antisense antisense MGP_AJ_T0004266.1 MGP_AJ_G0003747.1 mouse_genomes_project 3 79969572 80034568 + Rbm46os antisense antisense MGP_AJ_T0004267.1 MGP_AJ_G0003747.1 mouse_genomes_project 3 79997221 80037096 + Rbm46os antisense antisense MGP_AJ_T0010516.1 MGP_AJ_G0008638.1 mouse_genomes_project 3 66195610 66195705 + Mir16-2 miRNA miRNA MGP_AJ_T0061689.1 MGP_AJ_G0027368.1 mouse_genomes_project 3 85785356 85793312 + Arhgef2 protein_coding processed_transcript MGP_AJ_T0061690.1 MGP_AJ_G0027368.1 mouse_genomes_project 3 85785561 85796074 + Arhgef2 protein_coding processed_transcript MGP_AJ_T0061691.1 MGP_AJ_G0027368.1 mouse_genomes_project 3 85785693 85825580 + MGP_AJ_P0061691 Arhgef2 protein_coding protein_coding MGP_AJ_T0061692.1 MGP_AJ_G0027368.1 mouse_genomes_project 3 85793155 85796236 + Arhgef2 protein_coding processed_transcript MGP_AJ_T0061693.1 MGP_AJ_G0027368.1 mouse_genomes_project 3 85793343 85812351 + MGP_AJ_P0061693 Arhgef2 protein_coding protein_coding MGP_AJ_T0061694.1 MGP_AJ_G0027368.1 mouse_genomes_project 3 85794101 85813255 + MGP_AJ_P0061694 Arhgef2 protein_coding protein_coding MGP_AJ_T0061695.1 MGP_AJ_G0027368.1 mouse_genomes_project 3 85794877 85826705 + MGP_AJ_P0061695 Arhgef2 protein_coding protein_coding MGP_AJ_T0061696.1 MGP_AJ_G0027368.1 mouse_genomes_project 3 85794877 85826183 + MGP_AJ_P0061696 Arhgef2 protein_coding protein_coding MGP_AJ_T0061697.1 MGP_AJ_G0027368.1 mouse_genomes_project 3 85795251 85825546 + MGP_AJ_P0061697 Arhgef2 protein_coding protein_coding MGP_AJ_T0061698.1 MGP_AJ_G0027368.1 mouse_genomes_project 3 85799855 85825514 + MGP_AJ_P0061698 Arhgef2 protein_coding protein_coding MGP_AJ_T0061699.1 MGP_AJ_G0027368.1 mouse_genomes_project 3 85799868 85818204 + Arhgef2 protein_coding retained_intron MGP_AJ_T0061700.1 MGP_AJ_G0027368.1 mouse_genomes_project 3 85799989 85825514 + MGP_AJ_P0061700 Arhgef2 protein_coding protein_coding MGP_AJ_T0061701.1 MGP_AJ_G0027368.1 mouse_genomes_project 3 85800022 85826703 + MGP_AJ_P0061701 Arhgef2 protein_coding protein_coding MGP_AJ_T0061702.1 MGP_AJ_G0027368.1 mouse_genomes_project 3 85800190 85813218 + Arhgef2 protein_coding retained_intron MGP_AJ_T0061703.1 MGP_AJ_G0027368.1 mouse_genomes_project 3 85800278 85811816 + Arhgef2 protein_coding retained_intron MGP_AJ_T0061704.1 MGP_AJ_G0027368.1 mouse_genomes_project 3 85801189 85811682 + MGP_AJ_P0061704 Arhgef2 protein_coding protein_coding MGP_AJ_T0061705.1 MGP_AJ_G0027368.1 mouse_genomes_project 3 85801650 85819376 + MGP_AJ_P0061705 Arhgef2 protein_coding protein_coding MGP_AJ_T0061706.1 MGP_AJ_G0027368.1 mouse_genomes_project 3 85802094 85812373 + MGP_AJ_P0061706 Arhgef2 protein_coding protein_coding MGP_AJ_T0061707.1 MGP_AJ_G0027368.1 mouse_genomes_project 3 85808196 85811732 + MGP_AJ_P0061707 Arhgef2 protein_coding protein_coding MGP_AJ_T0061708.1 MGP_AJ_G0027368.1 mouse_genomes_project 3 85808223 85810857 + Arhgef2 protein_coding retained_intron MGP_AJ_T0061709.1 MGP_AJ_G0027368.1 mouse_genomes_project 3 85808227 85811748 + MGP_AJ_P0061709 Arhgef2 protein_coding protein_coding MGP_AJ_T0061710.1 MGP_AJ_G0027368.1 mouse_genomes_project 3 85808325 85811090 + MGP_AJ_P0061710 Arhgef2 protein_coding protein_coding MGP_AJ_T0061711.1 MGP_AJ_G0027368.1 mouse_genomes_project 3 85810666 85813418 + Arhgef2 protein_coding processed_transcript MGP_AJ_T0061712.1 MGP_AJ_G0027368.1 mouse_genomes_project 3 85810951 85812346 + Arhgef2 protein_coding retained_intron MGP_AJ_T0061713.1 MGP_AJ_G0027368.1 mouse_genomes_project 3 85811488 85812394 + Arhgef2 protein_coding retained_intron MGP_AJ_T0061714.1 MGP_AJ_G0027368.1 mouse_genomes_project 3 85811673 85816571 + Arhgef2 protein_coding retained_intron MGP_AJ_T0061715.1 MGP_AJ_G0027368.1 mouse_genomes_project 3 85813078 85813832 + Arhgef2 protein_coding retained_intron MGP_AJ_T0061716.1 MGP_AJ_G0027368.1 mouse_genomes_project 3 85821064 85822551 + Arhgef2 protein_coding retained_intron MGP_AJ_T0061717.1 MGP_AJ_G0027368.1 mouse_genomes_project 3 85822570 85825616 + Arhgef2 protein_coding processed_transcript MGP_AJ_T0001318.1 MGP_AJ_G0001242.1 mouse_genomes_project 3 123218506 123221485 - TEC TEC MGP_AJ_T0062762.1 MGP_AJ_G0027624.1 mouse_genomes_project 3 98037269 98063876 - MGP_AJ_P0062762 Wdr3 protein_coding protein_coding MGP_AJ_T0062763.1 MGP_AJ_G0027624.1 mouse_genomes_project 3 98037824 98040711 - Wdr3 protein_coding retained_intron MGP_AJ_T0062764.1 MGP_AJ_G0027624.1 mouse_genomes_project 3 98041588 98063876 - Wdr3 protein_coding retained_intron MGP_AJ_T0062765.1 MGP_AJ_G0027624.1 mouse_genomes_project 3 98041590 98042672 - Wdr3 protein_coding retained_intron MGP_AJ_T0062766.1 MGP_AJ_G0027624.1 mouse_genomes_project 3 98056735 98063866 - MGP_AJ_P0062766 Wdr3 protein_coding nonsense_mediated_decay MGP_AJ_T0062767.1 MGP_AJ_G0027624.1 mouse_genomes_project 3 98056735 98063801 - MGP_AJ_P0062767 Wdr3 protein_coding nonsense_mediated_decay MGP_AJ_T0010507.1 MGP_AJ_G0008629.1 mouse_genomes_project 3 32450776 32450868 + Gm25442 miRNA miRNA MGP_AJ_T0001343.1 MGP_AJ_G0001266.1 mouse_genomes_project 3 127420377 127421480 + TEC TEC MGP_AJ_T0014213.1 MGP_AJ_G0012308.1 mouse_genomes_project 3 98594774 98595065 + processed_pseudogene processed_pseudogene MGP_AJ_T0001393.1 MGP_AJ_G0001316.1 mouse_genomes_project 3 154987274 154988949 + TEC TEC MGP_AJ_T0060804.1 MGP_AJ_G0027164.1 mouse_genomes_project 3 50072310 50288480 + MGP_AJ_P0060804 Lhfp protein_coding protein_coding MGP_AJ_T0060805.1 MGP_AJ_G0027164.1 mouse_genomes_project 3 50072341 50288476 + Lhfp protein_coding processed_transcript MGP_AJ_T0060806.1 MGP_AJ_G0027164.1 mouse_genomes_project 3 50072365 50288480 + MGP_AJ_P0060806 Lhfp protein_coding protein_coding MGP_AJ_T0060807.1 MGP_AJ_G0027164.1 mouse_genomes_project 3 50254227 50257489 + Lhfp protein_coding retained_intron MGP_AJ_T0063169.1 MGP_AJ_G0027718.1 mouse_genomes_project 3 105981273 105986759 - MGP_AJ_P0063169 Gstm7 protein_coding protein_coding MGP_AJ_T0063170.1 MGP_AJ_G0027718.1 mouse_genomes_project 3 105981646 105986609 - MGP_AJ_P0063170 Gstm7 protein_coding protein_coding MGP_AJ_T0063171.1 MGP_AJ_G0027718.1 mouse_genomes_project 3 105981749 105986556 - MGP_AJ_P0063171 Gstm7 protein_coding protein_coding MGP_AJ_T0063172.1 MGP_AJ_G0027718.1 mouse_genomes_project 3 105984002 105986521 - MGP_AJ_P0063172 Gstm7 protein_coding protein_coding MGP_AJ_T0063173.1 MGP_AJ_G0027718.1 mouse_genomes_project 3 105984071 105986552 - MGP_AJ_P0063173 Gstm7 protein_coding protein_coding MGP_AJ_T0001359.1 MGP_AJ_G0001282.1 mouse_genomes_project 3 131621528 131630443 - TEC TEC MGP_AJ_T0098965.1 MGP_AJ_G0036942.1 mouse_genomes_project 3 96102218 96105279 + Gm43189 sense_intronic sense_intronic MGP_AJ_T0001176.1 MGP_AJ_G0001102.1 mouse_genomes_project 3 46173195 46174261 + TEC TEC MGP_AJ_T0061941.1 MGP_AJ_G0027408.1 mouse_genomes_project 3 86969672 86971398 + Adar protein_coding retained_intron MGP_AJ_T0061942.1 MGP_AJ_G0027408.1 mouse_genomes_project 3 86969982 86990047 + Adar protein_coding processed_transcript MGP_AJ_T0061943.1 MGP_AJ_G0027408.1 mouse_genomes_project 3 86985606 87006912 + MGP_AJ_P0061943 Adar protein_coding protein_coding MGP_AJ_T0061944.1 MGP_AJ_G0027408.1 mouse_genomes_project 3 86985606 87006912 + MGP_AJ_P0061944 Adar protein_coding protein_coding MGP_AJ_T0061945.1 MGP_AJ_G0027408.1 mouse_genomes_project 3 86985606 87006912 + MGP_AJ_P0061945 Adar protein_coding protein_coding MGP_AJ_T0061946.1 MGP_AJ_G0027408.1 mouse_genomes_project 3 86985669 87006681 + MGP_AJ_P0061946 Adar protein_coding protein_coding MGP_AJ_T0061947.1 MGP_AJ_G0027408.1 mouse_genomes_project 3 86992479 86994183 + Adar protein_coding retained_intron MGP_AJ_T0061948.1 MGP_AJ_G0027408.1 mouse_genomes_project 3 87001131 87002698 + Adar protein_coding retained_intron MGP_AJ_T0061798.1 MGP_AJ_G0027383.1 mouse_genomes_project 3 86415458 86420824 + MGP_AJ_P0061798 Scamp3 protein_coding protein_coding MGP_AJ_T0061799.1 MGP_AJ_G0027383.1 mouse_genomes_project 3 86415475 86420824 + MGP_AJ_P0061799 Scamp3 protein_coding protein_coding MGP_AJ_T0061800.1 MGP_AJ_G0027383.1 mouse_genomes_project 3 86415481 86417651 + Scamp3 protein_coding retained_intron MGP_AJ_T0061801.1 MGP_AJ_G0027383.1 mouse_genomes_project 3 86415505 86420822 + MGP_AJ_P0061801 Scamp3 protein_coding protein_coding MGP_AJ_T0061802.1 MGP_AJ_G0027383.1 mouse_genomes_project 3 86415516 86417438 + Scamp3 protein_coding retained_intron MGP_AJ_T0061803.1 MGP_AJ_G0027383.1 mouse_genomes_project 3 86415522 86417650 + Scamp3 protein_coding retained_intron MGP_AJ_T0061804.1 MGP_AJ_G0027383.1 mouse_genomes_project 3 86415606 86419335 + Scamp3 protein_coding retained_intron MGP_AJ_T0061805.1 MGP_AJ_G0027383.1 mouse_genomes_project 3 86415743 86418371 + Scamp3 protein_coding retained_intron MGP_AJ_T0007670.1 MGP_AJ_G0006271.1 mouse_genomes_project 3 107154904 107156731 - 4930408K08Rik lincRNA lincRNA MGP_AJ_T0060794.1 MGP_AJ_G0027161.1 mouse_genomes_project 3 48701980 48815689 - MGP_AJ_P0060794 Maml3 protein_coding protein_coding MGP_AJ_T0060795.1 MGP_AJ_G0027161.1 mouse_genomes_project 3 48701980 49129025 - MGP_AJ_P0060795 Maml3 protein_coding protein_coding MGP_AJ_T0060796.1 MGP_AJ_G0027161.1 mouse_genomes_project 3 48813529 48815727 - Maml3 protein_coding retained_intron MGP_AJ_T0099824.1 MGP_AJ_G0037790.1 mouse_genomes_project 3 52364745 52364852 + Gm25132 snRNA snRNA MGP_AJ_T0007547.1 MGP_AJ_G0006177.1 mouse_genomes_project 3 49546758 49580919 + Gm30173 lincRNA lincRNA MGP_AJ_T0004370.1 MGP_AJ_G0003813.1 mouse_genomes_project 3 125599565 125600898 - Gm43729 antisense antisense MGP_AJ_T0001340.1 MGP_AJ_G0001264.1 mouse_genomes_project 3 126092941 126094907 + TEC TEC MGP_AJ_T0001341.1 MGP_AJ_G0001264.1 mouse_genomes_project 3 126092942 126094907 + TEC TEC MGP_AJ_T0014222.1 MGP_AJ_G0012317.1 mouse_genomes_project 3 100613692 100614490 - processed_pseudogene processed_pseudogene MGP_AJ_T0001299.1 MGP_AJ_G0001223.1 mouse_genomes_project 3 116947241 116949475 + TEC TEC MGP_AJ_T0010512.1 MGP_AJ_G0008634.1 mouse_genomes_project 3 48305724 48305790 + Gm24282 miRNA miRNA MGP_AJ_T0010495.1 MGP_AJ_G0008617.1 mouse_genomes_project 3 14907081 14907190 + Mir124a-2 miRNA miRNA MGP_AJ_T0007718.1 MGP_AJ_G0006309.1 mouse_genomes_project 3 131817355 131826632 - lincRNA lincRNA MGP_AJ_T0061806.1 MGP_AJ_G0027384.1 mouse_genomes_project 3 86421201 86422740 + MGP_AJ_P0061806 Fam189b protein_coding protein_coding MGP_AJ_T0061807.1 MGP_AJ_G0027384.1 mouse_genomes_project 3 86421261 86427298 + MGP_AJ_P0061807 Fam189b protein_coding protein_coding MGP_AJ_T0061808.1 MGP_AJ_G0027384.1 mouse_genomes_project 3 86421262 86427296 + MGP_AJ_P0061808 Fam189b protein_coding nonsense_mediated_decay MGP_AJ_T0061809.1 MGP_AJ_G0027384.1 mouse_genomes_project 3 86421638 86427297 + MGP_AJ_P0061809 Fam189b protein_coding nonsense_mediated_decay MGP_AJ_T0061810.1 MGP_AJ_G0027384.1 mouse_genomes_project 3 86421691 86427295 + MGP_AJ_P0061810 Fam189b protein_coding protein_coding MGP_AJ_T0061811.1 MGP_AJ_G0027384.1 mouse_genomes_project 3 86421699 86427302 + MGP_AJ_P0061811 Fam189b protein_coding protein_coding MGP_AJ_T0061812.1 MGP_AJ_G0027384.1 mouse_genomes_project 3 86422287 86423830 + Fam189b protein_coding retained_intron MGP_AJ_T0061813.1 MGP_AJ_G0027384.1 mouse_genomes_project 3 86425382 86426484 + Fam189b protein_coding retained_intron MGP_AJ_T0061814.1 MGP_AJ_G0027384.1 mouse_genomes_project 3 86425940 86426483 + Fam189b protein_coding retained_intron MGP_AJ_T0061815.1 MGP_AJ_G0027384.1 mouse_genomes_project 3 86425990 86426787 + Fam189b protein_coding processed_transcript MGP_AJ_T0063410.1 MGP_AJ_G0027770.1 mouse_genomes_project 3 114589821 114600772 + Lrrc39 protein_coding retained_intron MGP_AJ_T0063411.1 MGP_AJ_G0027770.1 mouse_genomes_project 3 114589826 114610773 + MGP_AJ_P0063411 Lrrc39 protein_coding protein_coding MGP_AJ_T0014249.1 MGP_AJ_G0012344.1 mouse_genomes_project 3 107265412 107266277 - processed_pseudogene processed_pseudogene MGP_AJ_T0062815.1 MGP_AJ_G0027638.1 mouse_genomes_project 3 99936139 99940795 + MGP_AJ_P0062815 Nhlh2 protein_coding protein_coding MGP_AJ_T0062816.1 MGP_AJ_G0027638.1 mouse_genomes_project 3 99936209 99941570 + MGP_AJ_P0062816 Nhlh2 protein_coding protein_coding MGP_AJ_T0062817.1 MGP_AJ_G0027638.1 mouse_genomes_project 3 99936218 99940569 + MGP_AJ_P0062817 Nhlh2 protein_coding protein_coding MGP_AJ_T0013892.1 MGP_AJ_G0011987.1 mouse_genomes_project 3 888699 889015 + processed_pseudogene processed_pseudogene MGP_AJ_T0063115.1 MGP_AJ_G0027703.1 mouse_genomes_project 3 105266509 105270617 + MGP_AJ_P0063115 A630076J17Rik protein_coding protein_coding MGP_AJ_T0013968.1 MGP_AJ_G0012063.1 mouse_genomes_project 3 24153905 24154016 + processed_pseudogene processed_pseudogene MGP_AJ_T0099818.1 MGP_AJ_G0037784.1 mouse_genomes_project 3 42839457 42839620 + Gm25796 snRNA snRNA MGP_AJ_T0007764.1 MGP_AJ_G0006348.1 mouse_genomes_project 3 144494530 144506297 - Gm10636 lincRNA lincRNA MGP_AJ_T0062344.1 MGP_AJ_G0027526.1 mouse_genomes_project 3 92849140 92861272 + MGP_AJ_P0062344 Vps72 protein_coding protein_coding MGP_AJ_T0062345.1 MGP_AJ_G0027526.1 mouse_genomes_project 3 92849160 92856795 + Vps72 protein_coding processed_transcript MGP_AJ_T0062346.1 MGP_AJ_G0027526.1 mouse_genomes_project 3 92849191 92860942 + Vps72 protein_coding processed_transcript MGP_AJ_T0062347.1 MGP_AJ_G0027526.1 mouse_genomes_project 3 92853471 92857611 + Vps72 protein_coding processed_transcript MGP_AJ_T0062348.1 MGP_AJ_G0027526.1 mouse_genomes_project 3 92855213 92857730 + Vps72 protein_coding retained_intron MGP_AJ_T0060038.1 MGP_AJ_G0027012.1 mouse_genomes_project 3 3742654 3747676 - MGP_AJ_P0060038 1700008P02Rik protein_coding protein_coding MGP_AJ_T0013916.1 MGP_AJ_G0012011.1 mouse_genomes_project 3 7074312 7075126 - processed_pseudogene processed_pseudogene MGP_AJ_T0063011.1 MGP_AJ_G0027674.1 mouse_genomes_project 3 102887228 102904201 - MGP_AJ_P0063011 Wnt2b protein_coding protein_coding MGP_AJ_T0063012.1 MGP_AJ_G0027674.1 mouse_genomes_project 3 102902692 102904001 - Wnt2b protein_coding retained_intron MGP_AJ_T0014269.1 MGP_AJ_G0012364.1 mouse_genomes_project 3 113180308 113180729 - processed_pseudogene processed_pseudogene MGP_AJ_T0061668.1 MGP_AJ_G0027364.1 mouse_genomes_project 3 85716220 85723769 - MGP_AJ_P0061668 Rab25 protein_coding protein_coding MGP_AJ_T0061669.1 MGP_AJ_G0027364.1 mouse_genomes_project 3 85716500 85723718 - MGP_AJ_P0061669 Rab25 protein_coding protein_coding MGP_AJ_T0061670.1 MGP_AJ_G0027364.1 mouse_genomes_project 3 85716867 85717706 - Rab25 protein_coding retained_intron MGP_AJ_T0061671.1 MGP_AJ_G0027364.1 mouse_genomes_project 3 85718833 85723751 - Rab25 protein_coding retained_intron MGP_AJ_T0014209.1 MGP_AJ_G0012304.1 mouse_genomes_project 3 97384309 97385105 + processed_pseudogene processed_pseudogene MGP_AJ_T0060813.1 MGP_AJ_G0027166.1 mouse_genomes_project 3 50488122 50507025 + MGP_AJ_P0060813 Proser1 protein_coding protein_coding MGP_AJ_T0060814.1 MGP_AJ_G0027166.1 mouse_genomes_project 3 50488263 50489203 + Proser1 protein_coding retained_intron MGP_AJ_T0060815.1 MGP_AJ_G0027166.1 mouse_genomes_project 3 50488388 50498621 + Proser1 protein_coding retained_intron MGP_AJ_T0060816.1 MGP_AJ_G0027166.1 mouse_genomes_project 3 50503400 50505190 + Proser1 protein_coding retained_intron MGP_AJ_T0014118.1 MGP_AJ_G0012213.1 mouse_genomes_project 3 69085420 69085579 + processed_pseudogene processed_pseudogene MGP_AJ_T0101140.1 MGP_AJ_G0039106.1 mouse_genomes_project 3 84723928 84724048 - Gm25167 snoRNA snoRNA MGP_AJ_T0007479.1 MGP_AJ_G0006123.1 mouse_genomes_project 3 17016493 17017576 + 4632415L05Rik lincRNA lincRNA MGP_AJ_T0007480.1 MGP_AJ_G0006123.1 mouse_genomes_project 3 17016505 17021436 + 4632415L05Rik lincRNA lincRNA MGP_AJ_T0063908.1 MGP_AJ_G0027861.1 mouse_genomes_project 3 133302476 133326731 + MGP_AJ_P0063908 Bdh2 protein_coding protein_coding MGP_AJ_T0063909.1 MGP_AJ_G0027861.1 mouse_genomes_project 3 133302516 133326731 + MGP_AJ_P0063909 Bdh2 protein_coding protein_coding MGP_AJ_T0063910.1 MGP_AJ_G0027861.1 mouse_genomes_project 3 133302538 133305673 + Bdh2 protein_coding retained_intron MGP_AJ_T0063911.1 MGP_AJ_G0027861.1 mouse_genomes_project 3 133309995 133326728 + Bdh2 protein_coding processed_transcript MGP_AJ_T0017944.1 MGP_AJ_G0015477.1 mouse_genomes_project 3 34463209 34550375 + Gm43439 processed_transcript processed_transcript MGP_AJ_T0061437.1 MGP_AJ_G0027315.1 mouse_genomes_project 3 83091848 83204590 + Sh3d19 protein_coding processed_transcript MGP_AJ_T0061439.1 MGP_AJ_G0027315.1 mouse_genomes_project 3 83159855 83204346 + Sh3d19 protein_coding processed_transcript MGP_AJ_T0061440.1 MGP_AJ_G0027315.1 mouse_genomes_project 3 83161593 83204634 + Sh3d19 protein_coding processed_transcript MGP_AJ_T0061441.1 MGP_AJ_G0027315.1 mouse_genomes_project 3 83161701 83204623 + Sh3d19 protein_coding processed_transcript MGP_AJ_T0061442.1 MGP_AJ_G0027315.1 mouse_genomes_project 3 83191987 83249804 + MGP_AJ_P0061442 Sh3d19 protein_coding protein_coding MGP_AJ_T0061443.1 MGP_AJ_G0027315.1 mouse_genomes_project 3 83205485 83249800 + MGP_AJ_P0061443 Sh3d19 protein_coding protein_coding MGP_AJ_T0061444.1 MGP_AJ_G0027315.1 mouse_genomes_project 3 83244620 83248392 + Sh3d19 protein_coding retained_intron MGP_AJ_T0013979.1 MGP_AJ_G0012074.1 mouse_genomes_project 3 30075694 30076292 - processed_pseudogene processed_pseudogene MGP_AJ_T0014094.1 MGP_AJ_G0012189.1 mouse_genomes_project 3 63792995 63793740 - processed_pseudogene processed_pseudogene MGP_AJ_T0061451.1 MGP_AJ_G0027319.1 mouse_genomes_project 3 83653821 83656528 - MGP_AJ_P0061451 Mab21l2 protein_coding protein_coding MGP_AJ_T0061452.1 MGP_AJ_G0027319.1 mouse_genomes_project 3 83654293 83656873 - Mab21l2 protein_coding processed_pseudogene MGP_AJ_T0004305.1 MGP_AJ_G0003773.1 mouse_genomes_project 3 94000305 94008707 + antisense antisense MGP_AJ_T0001268.1 MGP_AJ_G0001192.1 mouse_genomes_project 3 93698014 93700494 + TEC TEC MGP_AJ_T0060557.1 MGP_AJ_G0027123.1 mouse_genomes_project 3 33770830 33840102 - MGP_AJ_P0060557 Trpc3 protein_coding protein_coding MGP_AJ_T0060558.1 MGP_AJ_G0027123.1 mouse_genomes_project 3 33770911 33771713 - Trpc3 protein_coding processed_transcript MGP_AJ_T0060559.1 MGP_AJ_G0027123.1 mouse_genomes_project 3 33770911 33771691 - Trpc3 protein_coding processed_transcript MGP_AJ_T0060560.1 MGP_AJ_G0027123.1 mouse_genomes_project 3 33788524 33790772 - Trpc3 protein_coding retained_intron MGP_AJ_T0060561.1 MGP_AJ_G0027123.1 mouse_genomes_project 3 33819090 33840102 - Trpc3 protein_coding retained_intron MGP_AJ_T0063321.1 MGP_AJ_G0027752.1 mouse_genomes_project 3 107156785 107193006 + MGP_AJ_P0063321 Slc25a54 protein_coding protein_coding MGP_AJ_T0063322.1 MGP_AJ_G0027752.1 mouse_genomes_project 3 107156815 107192901 + MGP_AJ_P0063322 Slc25a54 protein_coding nonsense_mediated_decay MGP_AJ_T0001294.1 MGP_AJ_G0001218.1 mouse_genomes_project 3 114599722 114602079 - TEC TEC MGP_AJ_T0062069.1 MGP_AJ_G0027426.1 mouse_genomes_project 3 87674366 87679153 - Slc27a3 protein_coding retained_intron MGP_AJ_T0062070.1 MGP_AJ_G0027426.1 mouse_genomes_project 3 87674366 87679142 - MGP_AJ_P0062070 Slc27a3 protein_coding protein_coding MGP_AJ_T0062071.1 MGP_AJ_G0027426.1 mouse_genomes_project 3 87674368 87678879 - MGP_AJ_P0062071 Slc27a3 protein_coding protein_coding MGP_AJ_T0062072.1 MGP_AJ_G0027426.1 mouse_genomes_project 3 87676649 87678196 - Slc27a3 protein_coding retained_intron MGP_AJ_T0062073.1 MGP_AJ_G0027426.1 mouse_genomes_project 3 87677577 87678845 - Slc27a3 protein_coding processed_transcript MGP_AJ_T0007500.1 MGP_AJ_G0006142.1 mouse_genomes_project 3 31583224 31590949 - Gm20515 lincRNA lincRNA MGP_AJ_T0004307.1 MGP_AJ_G0003775.1 mouse_genomes_project 3 94032610 94035825 - Gm20628 antisense antisense MGP_AJ_T0014257.1 MGP_AJ_G0012352.1 mouse_genomes_project 3 110212160 110212460 - processed_pseudogene processed_pseudogene MGP_AJ_T0013910.1 MGP_AJ_G0012005.1 mouse_genomes_project 3 5761578 5761891 + processed_pseudogene processed_pseudogene MGP_AJ_T0014150.1 MGP_AJ_G0012245.1 mouse_genomes_project 3 82278199 82278860 - processed_pseudogene processed_pseudogene MGP_AJ_T0007556.1 MGP_AJ_G0006185.1 mouse_genomes_project 3 54661348 54674538 - Gm26671 lincRNA lincRNA MGP_AJ_T0007557.1 MGP_AJ_G0006185.1 mouse_genomes_project 3 54669701 54674599 - Gm26671 lincRNA lincRNA MGP_AJ_T0007558.1 MGP_AJ_G0006185.1 mouse_genomes_project 3 54670055 54674569 - Gm26671 lincRNA lincRNA MGP_AJ_T0007559.1 MGP_AJ_G0006185.1 mouse_genomes_project 3 54671620 54674605 - Gm26671 lincRNA lincRNA MGP_AJ_T0101122.1 MGP_AJ_G0039088.1 mouse_genomes_project 3 53025733 53025865 - Gm22784 snoRNA snoRNA MGP_AJ_T0007584.1 MGP_AJ_G0006206.1 mouse_genomes_project 3 76398654 76399655 + 6430573P05Rik lincRNA lincRNA MGP_AJ_T0007585.1 MGP_AJ_G0006206.1 mouse_genomes_project 3 76398873 76401326 + 6430573P05Rik lincRNA lincRNA MGP_AJ_T0007586.1 MGP_AJ_G0006206.1 mouse_genomes_project 3 76399209 76400286 + 6430573P05Rik lincRNA lincRNA MGP_AJ_T0062721.1 MGP_AJ_G0027609.1 mouse_genomes_project 3 95818355 95905939 + Notch2 protein_coding retained_intron MGP_AJ_T0062722.1 MGP_AJ_G0027609.1 mouse_genomes_project 3 95818366 95956393 + MGP_AJ_P0062722 Notch2 protein_coding protein_coding MGP_AJ_T0001374.1 MGP_AJ_G0001297.1 mouse_genomes_project 3 146707734 146708274 + TEC TEC MGP_AJ_T0014335.1 MGP_AJ_G0012430.1 mouse_genomes_project 3 134383690 134385195 + processed_pseudogene processed_pseudogene MGP_AJ_T0062451.1 MGP_AJ_G0027545.1 mouse_genomes_project 3 93274877 93305426 + MGP_AJ_P0062451 Ctss protein_coding protein_coding MGP_AJ_T0062452.1 MGP_AJ_G0027545.1 mouse_genomes_project 3 93274985 93305432 + MGP_AJ_P0062452 Ctss protein_coding protein_coding MGP_AJ_T0062171.1 MGP_AJ_G0027470.1 mouse_genomes_project 3 90105536 90107872 - MGP_AJ_P0062171 Smcp protein_coding protein_coding MGP_AJ_T0062172.1 MGP_AJ_G0027470.1 mouse_genomes_project 3 90105536 90110593 - MGP_AJ_P0062172 Smcp protein_coding protein_coding MGP_AJ_T0062725.1 MGP_AJ_G0027611.1 mouse_genomes_project 3 96032281 96046875 + MGP_AJ_P0062725 Reg4 protein_coding protein_coding MGP_AJ_T0063781.1 MGP_AJ_G0027835.1 mouse_genomes_project 3 127972328 127984966 + MGP_AJ_P0063781 Casp6 protein_coding protein_coding MGP_AJ_T0063782.1 MGP_AJ_G0027835.1 mouse_genomes_project 3 127972361 127979607 + Casp6 protein_coding processed_transcript MGP_AJ_T0063783.1 MGP_AJ_G0027835.1 mouse_genomes_project 3 127972404 127976318 + Casp6 protein_coding retained_intron MGP_AJ_T0063784.1 MGP_AJ_G0027835.1 mouse_genomes_project 3 127981324 127984464 + Casp6 protein_coding retained_intron MGP_AJ_T0010506.1 MGP_AJ_G0008628.1 mouse_genomes_project 3 32064344 32064451 - Mir6378 miRNA miRNA MGP_AJ_T0101160.1 MGP_AJ_G0039126.1 mouse_genomes_project 3 117739326 117739457 - Gm23432 snoRNA snoRNA MGP_AJ_T0061353.1 MGP_AJ_G0027291.1 mouse_genomes_project 3 79788817 79789812 + MGP_AJ_P0061353 protein_coding protein_coding MGP_AJ_T0099002.1 MGP_AJ_G0036979.1 mouse_genomes_project 3 102585290 102588154 + Gm43581 sense_intronic sense_intronic MGP_AJ_T0060747.1 MGP_AJ_G0027153.1 mouse_genomes_project 3 48237325 48260163 + MGP_AJ_P0060747 Noct protein_coding protein_coding MGP_AJ_T0060748.1 MGP_AJ_G0027153.1 mouse_genomes_project 3 48237348 48260150 + MGP_AJ_P0060748 Noct protein_coding protein_coding MGP_AJ_T0060749.1 MGP_AJ_G0027153.1 mouse_genomes_project 3 48253839 48260150 + MGP_AJ_P0060749 Noct protein_coding protein_coding MGP_AJ_T0098994.1 MGP_AJ_G0036971.1 mouse_genomes_project 3 102094598 102096508 - Gm43258 sense_intronic sense_intronic MGP_AJ_T0014025.1 MGP_AJ_G0012120.1 mouse_genomes_project 3 43438675 43439394 + processed_pseudogene processed_pseudogene MGP_AJ_T0060532.1 MGP_AJ_G0027117.1 mouse_genomes_project 3 33323551 33366087 - MGP_AJ_P0060532 Qrfpr protein_coding protein_coding MGP_AJ_T0060533.1 MGP_AJ_G0027117.1 mouse_genomes_project 3 33331453 33366028 - Qrfpr protein_coding retained_intron MGP_AJ_T0007751.1 MGP_AJ_G0006338.1 mouse_genomes_project 3 141731929 141773215 - Gm6260 lincRNA lincRNA MGP_AJ_T0007752.1 MGP_AJ_G0006338.1 mouse_genomes_project 3 141754298 141773282 - Gm6260 lincRNA lincRNA MGP_AJ_T0099871.1 MGP_AJ_G0037837.1 mouse_genomes_project 3 118393913 118394019 - Gm23733 snRNA snRNA MGP_AJ_T0062179.1 MGP_AJ_G0027476.1 mouse_genomes_project 3 90207054 90208838 + MGP_AJ_P0062179 Lce1c protein_coding protein_coding MGP_AJ_T0001196.1 MGP_AJ_G0001121.1 mouse_genomes_project 3 48848852 48849873 - TEC TEC MGP_AJ_T0062027.1 MGP_AJ_G0027418.1 mouse_genomes_project 3 87376020 87488447 + MGP_AJ_P0062027 Nup210l protein_coding protein_coding MGP_AJ_T0062028.1 MGP_AJ_G0027418.1 mouse_genomes_project 3 87376022 87488478 + MGP_AJ_P0062028 Nup210l protein_coding protein_coding MGP_AJ_T0017956.1 MGP_AJ_G0015483.1 mouse_genomes_project 3 79003030 79010098 - Gm9989 processed_transcript lincRNA MGP_AJ_T0017957.1 MGP_AJ_G0015483.1 mouse_genomes_project 3 79006967 79010163 - Gm9989 processed_transcript retained_intron MGP_AJ_T0011529.1 MGP_AJ_G0009651.1 mouse_genomes_project 3 6504973 6505282 + Gm22604 misc_RNA misc_RNA MGP_AJ_T0013957.1 MGP_AJ_G0012052.1 mouse_genomes_project 3 17950139 17951751 + processed_pseudogene processed_pseudogene MGP_AJ_T0098972.1 MGP_AJ_G0036949.1 mouse_genomes_project 3 98592411 98594215 - Gm43463 sense_intronic sense_intronic MGP_AJ_T0014378.1 MGP_AJ_G0012473.1 mouse_genomes_project 3 151962403 151962696 + processed_pseudogene processed_pseudogene MGP_AJ_T0099866.1 MGP_AJ_G0037832.1 mouse_genomes_project 3 102642980 102643070 + Gm24223 snRNA snRNA MGP_AJ_T0014386.1 MGP_AJ_G0012481.1 mouse_genomes_project 3 157749468 157749690 + processed_pseudogene processed_pseudogene MGP_AJ_T0063323.1 MGP_AJ_G0027753.1 mouse_genomes_project 3 107200008 107241183 + MGP_AJ_P0063323 Slc25a24 protein_coding protein_coding MGP_AJ_T0063324.1 MGP_AJ_G0027753.1 mouse_genomes_project 3 107200021 107231262 + MGP_AJ_P0063324 Slc25a24 protein_coding nonsense_mediated_decay MGP_AJ_T0062842.1 MGP_AJ_G0027644.1 mouse_genomes_project 3 100752545 100862091 - MGP_AJ_P0062842 Sycp1 protein_coding protein_coding MGP_AJ_T0062843.1 MGP_AJ_G0027644.1 mouse_genomes_project 3 100753159 100755332 - Sycp1 protein_coding processed_transcript MGP_AJ_T0062844.1 MGP_AJ_G0027644.1 mouse_genomes_project 3 100753195 100862091 - MGP_AJ_P0062844 Sycp1 protein_coding protein_coding MGP_AJ_T0062845.1 MGP_AJ_G0027644.1 mouse_genomes_project 3 100848780 100862081 - MGP_AJ_P0062845 Sycp1 protein_coding protein_coding MGP_AJ_T0060037.1 MGP_AJ_G0027011.1 mouse_genomes_project 3 2883546 2884035 + MGP_AJ_P0060037 Gm8797 protein_coding protein_coding MGP_AJ_T0007739.1 MGP_AJ_G0006327.1 mouse_genomes_project 3 140925651 140936216 + 9530052C20Rik lincRNA lincRNA MGP_AJ_T0099812.1 MGP_AJ_G0037778.1 mouse_genomes_project 3 21656475 21656582 + Gm24704 snRNA snRNA MGP_AJ_T0062054.1 MGP_AJ_G0027424.1 mouse_genomes_project 3 87549166 87564772 + MGP_AJ_P0062054 Dennd4b protein_coding protein_coding MGP_AJ_T0062055.1 MGP_AJ_G0027424.1 mouse_genomes_project 3 87550495 87564772 + MGP_AJ_P0062055 Dennd4b protein_coding protein_coding MGP_AJ_T0062056.1 MGP_AJ_G0027424.1 mouse_genomes_project 3 87551442 87559630 + MGP_AJ_P0062056 Dennd4b protein_coding nonsense_mediated_decay MGP_AJ_T0062057.1 MGP_AJ_G0027424.1 mouse_genomes_project 3 87552997 87555679 + MGP_AJ_P0062057 Dennd4b protein_coding nonsense_mediated_decay MGP_AJ_T0062058.1 MGP_AJ_G0027424.1 mouse_genomes_project 3 87559447 87561581 + MGP_AJ_P0062058 Dennd4b protein_coding protein_coding MGP_AJ_T0062059.1 MGP_AJ_G0027424.1 mouse_genomes_project 3 87561505 87562446 + Dennd4b protein_coding retained_intron MGP_AJ_T0062060.1 MGP_AJ_G0027424.1 mouse_genomes_project 3 87562110 87562773 + Dennd4b protein_coding retained_intron MGP_AJ_T0062552.1 MGP_AJ_G0027561.1 mouse_genomes_project 3 93746151 93753699 - MGP_AJ_P0062552 Plekho1 protein_coding protein_coding MGP_AJ_T0062553.1 MGP_AJ_G0027561.1 mouse_genomes_project 3 93746540 93753373 - MGP_AJ_P0062553 Plekho1 protein_coding protein_coding MGP_AJ_T0062554.1 MGP_AJ_G0027561.1 mouse_genomes_project 3 93747111 93753425 - MGP_AJ_P0062554 Plekho1 protein_coding protein_coding MGP_AJ_T0062555.1 MGP_AJ_G0027561.1 mouse_genomes_project 3 93749176 93753564 - MGP_AJ_P0062555 Plekho1 protein_coding protein_coding MGP_AJ_T0062556.1 MGP_AJ_G0027561.1 mouse_genomes_project 3 93753039 93753373 - Plekho1 protein_coding retained_intron MGP_AJ_T0007622.1 MGP_AJ_G0006229.1 mouse_genomes_project 3 89567857 89570138 + Gm43736 lincRNA lincRNA MGP_AJ_T0062683.1 MGP_AJ_G0027601.1 mouse_genomes_project 3 94994635 95018349 - MGP_AJ_P0062683 Bcl9 protein_coding protein_coding MGP_AJ_T0062684.1 MGP_AJ_G0027601.1 mouse_genomes_project 3 94995601 95007492 - MGP_AJ_P0062684 Bcl9 protein_coding protein_coding MGP_AJ_T0062685.1 MGP_AJ_G0027601.1 mouse_genomes_project 3 95001436 95004983 - Bcl9 protein_coding processed_transcript MGP_AJ_T0062686.1 MGP_AJ_G0027601.1 mouse_genomes_project 3 95005480 95019315 - Bcl9 protein_coding retained_intron MGP_AJ_T0062687.1 MGP_AJ_G0027601.1 mouse_genomes_project 3 95007512 95019831 - Bcl9 protein_coding processed_transcript MGP_AJ_T0062688.1 MGP_AJ_G0027601.1 mouse_genomes_project 3 95007537 95086789 - Bcl9 protein_coding processed_transcript MGP_AJ_T0062689.1 MGP_AJ_G0027601.1 mouse_genomes_project 3 95007537 95018520 - Bcl9 protein_coding processed_transcript MGP_AJ_T0062690.1 MGP_AJ_G0027601.1 mouse_genomes_project 3 95012809 95015194 - Bcl9 protein_coding retained_intron MGP_AJ_T0101169.1 MGP_AJ_G0039135.1 mouse_genomes_project 3 140837381 140837474 + Gm25965 snoRNA snoRNA MGP_AJ_T0001321.1 MGP_AJ_G0001245.1 mouse_genomes_project 3 124655080 124657559 + TEC TEC MGP_AJ_T0062259.1 MGP_AJ_G0027513.1 mouse_genomes_project 3 92185132 92264781 - MGP_AJ_P0062259 Snx27 protein_coding protein_coding MGP_AJ_T0062260.1 MGP_AJ_G0027513.1 mouse_genomes_project 3 92186900 92264614 - MGP_AJ_P0062260 Snx27 protein_coding protein_coding MGP_AJ_T0062261.1 MGP_AJ_G0027513.1 mouse_genomes_project 3 92188629 92212286 - Snx27 protein_coding processed_transcript MGP_AJ_T0062262.1 MGP_AJ_G0027513.1 mouse_genomes_project 3 92188715 92264744 - MGP_AJ_P0062262 Snx27 protein_coding nonsense_mediated_decay MGP_AJ_T0062263.1 MGP_AJ_G0027513.1 mouse_genomes_project 3 92188725 92207095 - Snx27 protein_coding processed_transcript MGP_AJ_T0062264.1 MGP_AJ_G0027513.1 mouse_genomes_project 3 92189644 92244132 - MGP_AJ_P0062264 Snx27 protein_coding protein_coding MGP_AJ_T0062265.1 MGP_AJ_G0027513.1 mouse_genomes_project 3 92207113 92243895 - MGP_AJ_P0062265 Snx27 protein_coding nonsense_mediated_decay MGP_AJ_T0062266.1 MGP_AJ_G0027513.1 mouse_genomes_project 3 92219198 92219847 - Snx27 protein_coding processed_transcript MGP_AJ_T0062674.1 MGP_AJ_G0027600.1 mouse_genomes_project 3 94944277 94962071 + MGP_AJ_P0062674 Acp6 protein_coding protein_coding MGP_AJ_T0062675.1 MGP_AJ_G0027600.1 mouse_genomes_project 3 94944596 94945896 + Acp6 protein_coding retained_intron MGP_AJ_T0062676.1 MGP_AJ_G0027600.1 mouse_genomes_project 3 94944603 94953809 + Acp6 protein_coding retained_intron MGP_AJ_T0062677.1 MGP_AJ_G0027600.1 mouse_genomes_project 3 94944603 94952548 + Acp6 protein_coding retained_intron MGP_AJ_T0062678.1 MGP_AJ_G0027600.1 mouse_genomes_project 3 94952875 94953951 + Acp6 protein_coding retained_intron MGP_AJ_T0062679.1 MGP_AJ_G0027600.1 mouse_genomes_project 3 94953592 94959366 + Acp6 protein_coding retained_intron MGP_AJ_T0062680.1 MGP_AJ_G0027600.1 mouse_genomes_project 3 94956648 94959395 + Acp6 protein_coding retained_intron MGP_AJ_T0062681.1 MGP_AJ_G0027600.1 mouse_genomes_project 3 94958140 94962015 + Acp6 protein_coding retained_intron MGP_AJ_T0062682.1 MGP_AJ_G0027600.1 mouse_genomes_project 3 94959505 94962796 + Acp6 protein_coding retained_intron MGP_AJ_T0014195.1 MGP_AJ_G0012290.1 mouse_genomes_project 3 93721908 93722268 - processed_pseudogene processed_pseudogene MGP_AJ_T0014312.1 MGP_AJ_G0012407.1 mouse_genomes_project 3 128911937 128912449 - processed_pseudogene processed_pseudogene MGP_AJ_T0001179.1 MGP_AJ_G0001105.1 mouse_genomes_project 3 47682976 47687068 - TEC TEC MGP_AJ_T0007640.1 MGP_AJ_G0006246.1 mouse_genomes_project 3 96813999 96817607 - 5730437C11Rik lincRNA lincRNA MGP_AJ_T0001308.1 MGP_AJ_G0001232.1 mouse_genomes_project 3 119871117 119872190 - TEC TEC MGP_AJ_T0061616.1 MGP_AJ_G0027355.1 mouse_genomes_project 3 85493070 85519129 + MGP_AJ_P0061616 Smg5 protein_coding protein_coding MGP_AJ_T0061617.1 MGP_AJ_G0027355.1 mouse_genomes_project 3 85493121 85509520 + Smg5 protein_coding retained_intron MGP_AJ_T0061618.1 MGP_AJ_G0027355.1 mouse_genomes_project 3 85493175 85500112 + Smg5 protein_coding retained_intron MGP_AJ_T0061619.1 MGP_AJ_G0027355.1 mouse_genomes_project 3 85497515 85504391 + Smg5 protein_coding processed_transcript MGP_AJ_T0061620.1 MGP_AJ_G0027355.1 mouse_genomes_project 3 85499236 85507522 + MGP_AJ_P0061620 Smg5 protein_coding nonsense_mediated_decay MGP_AJ_T0061621.1 MGP_AJ_G0027355.1 mouse_genomes_project 3 85509281 85511428 + Smg5 protein_coding retained_intron MGP_AJ_T0061622.1 MGP_AJ_G0027355.1 mouse_genomes_project 3 85514984 85516428 + Smg5 protein_coding retained_intron MGP_AJ_T0061623.1 MGP_AJ_G0027355.1 mouse_genomes_project 3 85515137 85518061 + Smg5 protein_coding processed_transcript MGP_AJ_T0061624.1 MGP_AJ_G0027355.1 mouse_genomes_project 3 85517326 85517882 + Smg5 protein_coding retained_intron MGP_AJ_T0061286.1 MGP_AJ_G0027276.1 mouse_genomes_project 3 76718900 76744565 - MGP_AJ_P0061286 Etfdh protein_coding protein_coding MGP_AJ_T0061287.1 MGP_AJ_G0027276.1 mouse_genomes_project 3 76718915 76744399 - MGP_AJ_P0061287 Etfdh protein_coding protein_coding MGP_AJ_T0061288.1 MGP_AJ_G0027276.1 mouse_genomes_project 3 76730807 76744385 - Etfdh protein_coding retained_intron MGP_AJ_T0061289.1 MGP_AJ_G0027276.1 mouse_genomes_project 3 76732402 76744565 - Etfdh protein_coding retained_intron MGP_AJ_T0061290.1 MGP_AJ_G0027276.1 mouse_genomes_project 3 76734581 76744420 - Etfdh protein_coding retained_intron MGP_AJ_T0061291.1 MGP_AJ_G0027276.1 mouse_genomes_project 3 76743950 76745202 - Etfdh protein_coding retained_intron MGP_AJ_T0061292.1 MGP_AJ_G0027276.1 mouse_genomes_project 3 76743968 76744441 - Etfdh protein_coding processed_transcript MGP_AJ_T0060932.1 MGP_AJ_G0027189.1 mouse_genomes_project 3 54494218 54617253 - MGP_AJ_P0060932 Wwtr1 protein_coding protein_coding MGP_AJ_T0060933.1 MGP_AJ_G0027189.1 mouse_genomes_project 3 54494351 54617335 - MGP_AJ_P0060933 Wwtr1 protein_coding protein_coding MGP_AJ_T0060883.1 MGP_AJ_G0027180.1 mouse_genomes_project 3 52173436 52198755 + MGP_AJ_P0060883 Spg20 protein_coding protein_coding MGP_AJ_T0060884.1 MGP_AJ_G0027180.1 mouse_genomes_project 3 52173441 52190759 + Spg20 protein_coding retained_intron MGP_AJ_T0060885.1 MGP_AJ_G0027180.1 mouse_genomes_project 3 52173457 52198744 + MGP_AJ_P0060885 Spg20 protein_coding protein_coding MGP_AJ_T0060886.1 MGP_AJ_G0027180.1 mouse_genomes_project 3 52173466 52175581 + Spg20 protein_coding retained_intron MGP_AJ_T0060887.1 MGP_AJ_G0027180.1 mouse_genomes_project 3 52173494 52198750 + MGP_AJ_P0060887 Spg20 protein_coding protein_coding MGP_AJ_T0060888.1 MGP_AJ_G0027180.1 mouse_genomes_project 3 52173715 52191127 + MGP_AJ_P0060888 Spg20 protein_coding protein_coding MGP_AJ_T0060889.1 MGP_AJ_G0027180.1 mouse_genomes_project 3 52173924 52178591 + MGP_AJ_P0060889 Spg20 protein_coding protein_coding MGP_AJ_T0060890.1 MGP_AJ_G0027180.1 mouse_genomes_project 3 52177506 52178663 + MGP_AJ_P0060890 Spg20 protein_coding protein_coding MGP_AJ_T0013992.1 MGP_AJ_G0012087.1 mouse_genomes_project 3 33687349 33688048 - processed_pseudogene processed_pseudogene MGP_AJ_T0098970.1 MGP_AJ_G0036947.1 mouse_genomes_project 3 98534311 98536432 - Gm42869 sense_intronic sense_intronic MGP_AJ_T0099826.1 MGP_AJ_G0037792.1 mouse_genomes_project 3 54978904 54979004 - Gm24531 snRNA snRNA MGP_AJ_T0013943.1 MGP_AJ_G0012038.1 mouse_genomes_project 3 14511974 14512479 + processed_pseudogene processed_pseudogene MGP_AJ_T0014348.1 MGP_AJ_G0012443.1 mouse_genomes_project 3 137436662 137437106 + processed_pseudogene processed_pseudogene MGP_AJ_T0060031.1 MGP_AJ_G0027010.1 mouse_genomes_project 3 2686804 2703957 - MGP_AJ_P0060031 Pex2 protein_coding protein_coding MGP_AJ_T0060032.1 MGP_AJ_G0027010.1 mouse_genomes_project 3 2686804 2703957 - MGP_AJ_P0060032 Pex2 protein_coding protein_coding MGP_AJ_T0060033.1 MGP_AJ_G0027010.1 mouse_genomes_project 3 2687115 2690352 - MGP_AJ_P0060033 Pex2 protein_coding protein_coding MGP_AJ_T0060034.1 MGP_AJ_G0027010.1 mouse_genomes_project 3 2687116 2703952 - MGP_AJ_P0060034 Pex2 protein_coding protein_coding MGP_AJ_T0060035.1 MGP_AJ_G0027010.1 mouse_genomes_project 3 2687116 2704046 - MGP_AJ_P0060035 Pex2 protein_coding protein_coding MGP_AJ_T0060036.1 MGP_AJ_G0027010.1 mouse_genomes_project 3 2687120 2703935 - MGP_AJ_P0060036 Pex2 protein_coding protein_coding MGP_AJ_T0061602.1 MGP_AJ_G0027353.1 mouse_genomes_project 3 85480755 85488244 + MGP_AJ_P0061602 Glmp protein_coding protein_coding MGP_AJ_T0061603.1 MGP_AJ_G0027353.1 mouse_genomes_project 3 85480787 85486442 + Glmp protein_coding retained_intron MGP_AJ_T0061604.1 MGP_AJ_G0027353.1 mouse_genomes_project 3 85480790 85482311 + Glmp protein_coding retained_intron MGP_AJ_T0061605.1 MGP_AJ_G0027353.1 mouse_genomes_project 3 85480792 85484518 + Glmp protein_coding retained_intron MGP_AJ_T0061606.1 MGP_AJ_G0027353.1 mouse_genomes_project 3 85480804 85482200 + MGP_AJ_P0061606 Glmp protein_coding nonsense_mediated_decay MGP_AJ_T0061607.1 MGP_AJ_G0027353.1 mouse_genomes_project 3 85480814 85485299 + MGP_AJ_P0061607 Glmp protein_coding protein_coding MGP_AJ_T0061608.1 MGP_AJ_G0027353.1 mouse_genomes_project 3 85480814 85485294 + MGP_AJ_P0061608 Glmp protein_coding protein_coding MGP_AJ_T0061609.1 MGP_AJ_G0027353.1 mouse_genomes_project 3 85480814 85485299 + MGP_AJ_P0061609 Glmp protein_coding protein_coding MGP_AJ_T0061610.1 MGP_AJ_G0027353.1 mouse_genomes_project 3 85481776 85485249 + Glmp protein_coding retained_intron MGP_AJ_T0061611.1 MGP_AJ_G0027353.1 mouse_genomes_project 3 85485003 85485512 + MGP_AJ_P0061611 Glmp protein_coding protein_coding MGP_AJ_T0007455.1 MGP_AJ_G0006110.1 mouse_genomes_project 3 6505860 6540068 + C030034L19Rik lincRNA lincRNA MGP_AJ_T0007456.1 MGP_AJ_G0006110.1 mouse_genomes_project 3 6505864 6540983 + C030034L19Rik lincRNA lincRNA MGP_AJ_T0007457.1 MGP_AJ_G0006110.1 mouse_genomes_project 3 6505876 6516710 + C030034L19Rik lincRNA lincRNA MGP_AJ_T0101124.1 MGP_AJ_G0039090.1 mouse_genomes_project 3 54088147 54088277 + Gm22269 snoRNA snoRNA MGP_AJ_T0062979.1 MGP_AJ_G0027667.1 mouse_genomes_project 3 102581055 102600910 + MGP_AJ_P0062979 Slc16a1 protein_coding protein_coding MGP_AJ_T0099836.1 MGP_AJ_G0037802.1 mouse_genomes_project 3 65759361 65759550 - Gm22073 snRNA snRNA MGP_AJ_T0013922.1 MGP_AJ_G0012017.1 mouse_genomes_project 3 8203439 8203628 - processed_pseudogene processed_pseudogene MGP_AJ_T0004379.1 MGP_AJ_G0003821.1 mouse_genomes_project 3 131541907 131581089 + Gm42567 antisense antisense MGP_AJ_T0014321.1 MGP_AJ_G0012416.1 mouse_genomes_project 3 132187783 132188224 + processed_pseudogene processed_pseudogene MGP_AJ_T0004285.1 MGP_AJ_G0003760.1 mouse_genomes_project 3 87576797 87578565 - 4930537H20Rik antisense antisense MGP_AJ_T0001361.1 MGP_AJ_G0001284.1 mouse_genomes_project 3 133451867 133459694 - TEC TEC MGP_AJ_T0064036.1 MGP_AJ_G0027885.1 mouse_genomes_project 3 136305523 136324857 + Adh1 protein_coding processed_transcript MGP_AJ_T0064037.1 MGP_AJ_G0027885.1 mouse_genomes_project 3 136319536 136332885 + MGP_AJ_P0064037 Adh1 protein_coding protein_coding MGP_AJ_T0064038.1 MGP_AJ_G0027885.1 mouse_genomes_project 3 136319687 136323021 + Adh1 protein_coding retained_intron MGP_AJ_T0064039.1 MGP_AJ_G0027885.1 mouse_genomes_project 3 136319693 136332885 + MGP_AJ_P0064039 Adh1 protein_coding nonsense_mediated_decay MGP_AJ_T0062557.1 MGP_AJ_G0027562.1 mouse_genomes_project 3 93757545 93817798 - MGP_AJ_P0062557 Vps45 protein_coding protein_coding MGP_AJ_T0062558.1 MGP_AJ_G0027562.1 mouse_genomes_project 3 93804438 93817162 - Vps45 protein_coding retained_intron MGP_AJ_T0062559.1 MGP_AJ_G0027562.1 mouse_genomes_project 3 93816218 93817051 - Vps45 protein_coding processed_transcript MGP_AJ_T0013944.1 MGP_AJ_G0012039.1 mouse_genomes_project 3 14786888 14787228 + processed_pseudogene processed_pseudogene MGP_AJ_T0007726.1 MGP_AJ_G0006316.1 mouse_genomes_project 3 135018012 135020315 - Gm43356 lincRNA lincRNA MGP_AJ_T0004230.1 MGP_AJ_G0003718.1 mouse_genomes_project 3 34380515 34381655 + Gm12534 antisense antisense MGP_AJ_T0007618.1 MGP_AJ_G0006227.1 mouse_genomes_project 3 87023048 87028884 - 4632404H12Rik lincRNA lincRNA MGP_AJ_T0007619.1 MGP_AJ_G0006227.1 mouse_genomes_project 3 87023658 87028435 - 4632404H12Rik lincRNA lincRNA MGP_AJ_T0063028.1 MGP_AJ_G0027680.1 mouse_genomes_project 3 103676737 103699568 - MGP_AJ_P0063028 Rap1a protein_coding nonsense_mediated_decay MGP_AJ_T0063029.1 MGP_AJ_G0027680.1 mouse_genomes_project 3 103677811 103750113 - MGP_AJ_P0063029 Rap1a protein_coding unknown_likely_coding MGP_AJ_T0063030.1 MGP_AJ_G0027680.1 mouse_genomes_project 3 103678010 103750067 - MGP_AJ_P0063030 Rap1a protein_coding protein_coding MGP_AJ_T0063031.1 MGP_AJ_G0027680.1 mouse_genomes_project 3 103687271 103750092 - MGP_AJ_P0063031 Rap1a protein_coding protein_coding MGP_AJ_T0007645.1 MGP_AJ_G0006251.1 mouse_genomes_project 3 99620845 99628689 + Gm43135 lincRNA lincRNA MGP_AJ_T0014292.1 MGP_AJ_G0012387.1 mouse_genomes_project 3 121028703 121028898 + processed_pseudogene processed_pseudogene MGP_AJ_T0061672.1 MGP_AJ_G0027365.1 mouse_genomes_project 3 85725287 85726563 - Lamtor2 protein_coding retained_intron MGP_AJ_T0061673.1 MGP_AJ_G0027365.1 mouse_genomes_project 3 85725287 85728504 - MGP_AJ_P0061673 Lamtor2 protein_coding protein_coding MGP_AJ_T0061674.1 MGP_AJ_G0027365.1 mouse_genomes_project 3 85725288 85728339 - MGP_AJ_P0061674 Lamtor2 protein_coding protein_coding MGP_AJ_T0061675.1 MGP_AJ_G0027365.1 mouse_genomes_project 3 85725289 85728373 - Lamtor2 protein_coding processed_transcript MGP_AJ_T0061676.1 MGP_AJ_G0027365.1 mouse_genomes_project 3 85727709 85728554 - Lamtor2 protein_coding retained_intron MGP_AJ_T0099881.1 MGP_AJ_G0037847.1 mouse_genomes_project 3 135960527 135960626 - Gm25920 snRNA snRNA MGP_AJ_T0014204.1 MGP_AJ_G0012299.1 mouse_genomes_project 3 96723003 96723189 - processed_pseudogene processed_pseudogene MGP_AJ_T0014152.1 MGP_AJ_G0012247.1 mouse_genomes_project 3 83267714 83268147 - processed_pseudogene processed_pseudogene MGP_AJ_T0004262.1 MGP_AJ_G0003745.1 mouse_genomes_project 3 77301436 77304537 - Gm37892 antisense antisense MGP_AJ_T0061233.1 MGP_AJ_G0027265.1 mouse_genomes_project 3 72192956 72299191 - MGP_AJ_P0061233 Zbbx protein_coding protein_coding MGP_AJ_T0061234.1 MGP_AJ_G0027265.1 mouse_genomes_project 3 72193012 72310857 - MGP_AJ_P0061234 Zbbx protein_coding protein_coding MGP_AJ_T0061235.1 MGP_AJ_G0027265.1 mouse_genomes_project 3 72215896 72299122 - MGP_AJ_P0061235 Zbbx protein_coding protein_coding MGP_AJ_T0061236.1 MGP_AJ_G0027265.1 mouse_genomes_project 3 72232548 72299191 - MGP_AJ_P0061236 Zbbx protein_coding protein_coding MGP_AJ_T0061237.1 MGP_AJ_G0027265.1 mouse_genomes_project 3 72265127 72320949 - MGP_AJ_P0061237 Zbbx protein_coding protein_coding MGP_AJ_T0001364.1 MGP_AJ_G0001287.1 mouse_genomes_project 3 133914809 133918652 + TEC TEC MGP_AJ_T0102532.1 MGP_AJ_G0040274.1 mouse_genomes_project 3 61229436 61232037 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0062543.1 MGP_AJ_G0027560.1 mouse_genomes_project 3 93685271 93703461 + MGP_AJ_P0062543 Anp32e protein_coding protein_coding MGP_AJ_T0062544.1 MGP_AJ_G0027560.1 mouse_genomes_project 3 93685276 93703531 + MGP_AJ_P0062544 Anp32e protein_coding protein_coding MGP_AJ_T0062545.1 MGP_AJ_G0027560.1 mouse_genomes_project 3 93685318 93703338 + MGP_AJ_P0062545 Anp32e protein_coding protein_coding MGP_AJ_T0062546.1 MGP_AJ_G0027560.1 mouse_genomes_project 3 93685379 93705165 + MGP_AJ_P0062546 Anp32e protein_coding protein_coding MGP_AJ_T0062547.1 MGP_AJ_G0027560.1 mouse_genomes_project 3 93685534 93703443 + MGP_AJ_P0062547 Anp32e protein_coding nonsense_mediated_decay MGP_AJ_T0062548.1 MGP_AJ_G0027560.1 mouse_genomes_project 3 93685575 93703214 + MGP_AJ_P0062548 Anp32e protein_coding protein_coding MGP_AJ_T0062549.1 MGP_AJ_G0027560.1 mouse_genomes_project 3 93685590 93705287 + MGP_AJ_P0062549 Anp32e protein_coding protein_coding MGP_AJ_T0062550.1 MGP_AJ_G0027560.1 mouse_genomes_project 3 93686529 93694164 + MGP_AJ_P0062550 Anp32e protein_coding protein_coding MGP_AJ_T0062551.1 MGP_AJ_G0027560.1 mouse_genomes_project 3 93702117 93703419 + Anp32e protein_coding retained_intron MGP_AJ_T0014091.1 MGP_AJ_G0012186.1 mouse_genomes_project 3 63348366 63348625 + processed_pseudogene processed_pseudogene MGP_AJ_T0062608.1 MGP_AJ_G0027584.1 mouse_genomes_project 3 94360034 94364697 + MGP_AJ_P0062608 Ankrd34a protein_coding protein_coding MGP_AJ_T0102539.1 MGP_AJ_G0040281.1 mouse_genomes_project 3 62146698 62147274 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0060594.1 MGP_AJ_G0027128.1 mouse_genomes_project 3 34458444 34463137 - MGP_AJ_P0060594 Cetn4 protein_coding protein_coding MGP_AJ_T0060595.1 MGP_AJ_G0027128.1 mouse_genomes_project 3 34459310 34463137 - MGP_AJ_P0060595 Cetn4 protein_coding protein_coding MGP_AJ_T0060596.1 MGP_AJ_G0027128.1 mouse_genomes_project 3 34459310 34463137 - MGP_AJ_P0060596 Cetn4 protein_coding protein_coding MGP_AJ_T0060597.1 MGP_AJ_G0027128.1 mouse_genomes_project 3 34459445 34463111 - MGP_AJ_P0060597 Cetn4 protein_coding protein_coding MGP_AJ_T0060598.1 MGP_AJ_G0027128.1 mouse_genomes_project 3 34460041 34463399 - MGP_AJ_P0060598 Cetn4 protein_coding protein_coding MGP_AJ_T0001129.1 MGP_AJ_G0001055.1 mouse_genomes_project 3 27349965 27352078 - TEC TEC MGP_AJ_T0060108.1 MGP_AJ_G0027035.1 mouse_genomes_project 3 10899876 11236765 + MGP_AJ_P0060108 Ralyl protein_coding unknown_likely_coding MGP_AJ_T0060109.1 MGP_AJ_G0027035.1 mouse_genomes_project 3 11063840 11302433 + MGP_AJ_P0060109 Ralyl protein_coding protein_coding MGP_AJ_T0060110.1 MGP_AJ_G0027035.1 mouse_genomes_project 3 11063851 11303289 + MGP_AJ_P0060110 Ralyl protein_coding protein_coding MGP_AJ_T0060111.1 MGP_AJ_G0027035.1 mouse_genomes_project 3 11063858 11303596 + MGP_AJ_P0060111 Ralyl protein_coding protein_coding MGP_AJ_T0007723.1 MGP_AJ_G0006313.1 mouse_genomes_project 3 132472328 132633519 - lincRNA lincRNA MGP_AJ_T0001119.1 MGP_AJ_G0001045.1 mouse_genomes_project 3 16267340 16268052 - TEC TEC MGP_AJ_T0013969.1 MGP_AJ_G0012064.1 mouse_genomes_project 3 24181006 24182171 - processed_pseudogene processed_pseudogene MGP_AJ_T0014202.1 MGP_AJ_G0012297.1 mouse_genomes_project 3 95995995 95997132 - processed_pseudogene processed_pseudogene MGP_AJ_T0013973.1 MGP_AJ_G0012068.1 mouse_genomes_project 3 26900573 26900712 + processed_pseudogene processed_pseudogene MGP_AJ_T0063490.1 MGP_AJ_G0027785.1 mouse_genomes_project 3 119217297 119233395 - MGP_AJ_P0063490 Rwdd3 protein_coding protein_coding MGP_AJ_T0063491.1 MGP_AJ_G0027785.1 mouse_genomes_project 3 119217299 119218720 - Rwdd3 protein_coding retained_intron MGP_AJ_T0063492.1 MGP_AJ_G0027785.1 mouse_genomes_project 3 119217742 119220766 - MGP_AJ_P0063492 Rwdd3 protein_coding protein_coding MGP_AJ_T0063493.1 MGP_AJ_G0027785.1 mouse_genomes_project 3 119217745 119233388 - MGP_AJ_P0063493 Rwdd3 protein_coding protein_coding MGP_AJ_T0063494.1 MGP_AJ_G0027785.1 mouse_genomes_project 3 119217764 119233394 - MGP_AJ_P0063494 Rwdd3 protein_coding protein_coding MGP_AJ_T0063495.1 MGP_AJ_G0027785.1 mouse_genomes_project 3 119217838 119233394 - MGP_AJ_P0063495 Rwdd3 protein_coding protein_coding MGP_AJ_T0063496.1 MGP_AJ_G0027785.1 mouse_genomes_project 3 119218177 119233395 - MGP_AJ_P0063496 Rwdd3 protein_coding protein_coding MGP_AJ_T0063497.1 MGP_AJ_G0027785.1 mouse_genomes_project 3 119219918 119233395 - Rwdd3 protein_coding retained_intron MGP_AJ_T0063498.1 MGP_AJ_G0027785.1 mouse_genomes_project 3 119230869 119233394 - Rwdd3 protein_coding retained_intron MGP_AJ_T0014019.1 MGP_AJ_G0012114.1 mouse_genomes_project 3 40991173 40991516 - processed_pseudogene processed_pseudogene MGP_AJ_T0060787.1 MGP_AJ_G0027160.1 mouse_genomes_project 3 48675984 48697881 + Mgst2 protein_coding processed_transcript MGP_AJ_T0060788.1 MGP_AJ_G0027160.1 mouse_genomes_project 3 48676802 48693085 + Mgst2 protein_coding processed_transcript MGP_AJ_T0060789.1 MGP_AJ_G0027160.1 mouse_genomes_project 3 48676873 48698757 + MGP_AJ_P0060789 Mgst2 protein_coding protein_coding MGP_AJ_T0060790.1 MGP_AJ_G0027160.1 mouse_genomes_project 3 48687268 48698746 + Mgst2 protein_coding processed_transcript MGP_AJ_T0060791.1 MGP_AJ_G0027160.1 mouse_genomes_project 3 48687720 48698593 + Mgst2 protein_coding processed_transcript MGP_AJ_T0060792.1 MGP_AJ_G0027160.1 mouse_genomes_project 3 48691075 48698748 + Mgst2 protein_coding retained_intron MGP_AJ_T0060793.1 MGP_AJ_G0027160.1 mouse_genomes_project 3 48697695 48698751 + Mgst2 protein_coding retained_intron MGP_AJ_T0007561.1 MGP_AJ_G0006187.1 mouse_genomes_project 3 55173173 55221896 + 4921539H07Rik lincRNA lincRNA MGP_AJ_T0007563.1 MGP_AJ_G0006187.1 mouse_genomes_project 3 55220754 55224439 + 4921539H07Rik lincRNA lincRNA MGP_AJ_T0007535.1 MGP_AJ_G0006168.1 mouse_genomes_project 3 38561362 38568564 - Gm43733 lincRNA lincRNA MGP_AJ_T0007536.1 MGP_AJ_G0006168.1 mouse_genomes_project 3 38562319 38568594 - Gm43733 lincRNA lincRNA MGP_AJ_T0007537.1 MGP_AJ_G0006168.1 mouse_genomes_project 3 38562402 38563333 - Gm43733 lincRNA lincRNA MGP_AJ_T0007692.1 MGP_AJ_G0006287.1 mouse_genomes_project 3 120716849 120724748 - Gm43568 lincRNA lincRNA MGP_AJ_T0007693.1 MGP_AJ_G0006287.1 mouse_genomes_project 3 120721796 120724243 - Gm43568 lincRNA lincRNA MGP_AJ_T0007694.1 MGP_AJ_G0006287.1 mouse_genomes_project 3 120723212 120724465 - Gm43568 lincRNA lincRNA MGP_AJ_T0060058.1 MGP_AJ_G0027018.1 mouse_genomes_project 3 5897602 6011042 - MGP_AJ_P0060058 Mrps28 protein_coding protein_coding MGP_AJ_T0060087.1 MGP_AJ_G0027028.1 mouse_genomes_project 3 7370621 7429940 - MGP_AJ_P0060087 Fabp12 protein_coding protein_coding MGP_AJ_T0060088.1 MGP_AJ_G0027028.1 mouse_genomes_project 3 7372330 7380720 - MGP_AJ_P0060088 Fabp12 protein_coding protein_coding MGP_AJ_T0060089.1 MGP_AJ_G0027028.1 mouse_genomes_project 3 7372330 7380693 - MGP_AJ_P0060089 Fabp12 protein_coding protein_coding MGP_AJ_T0060090.1 MGP_AJ_G0027028.1 mouse_genomes_project 3 7372363 7429931 - MGP_AJ_P0060090 Fabp12 protein_coding protein_coding MGP_AJ_T0017977.1 MGP_AJ_G0015492.1 mouse_genomes_project 3 102695006 102715186 - Gm43584 processed_transcript processed_transcript MGP_AJ_T0062700.1 MGP_AJ_G0027605.1 mouse_genomes_project 3 95457365 95469979 + MGP_AJ_P0062700 Prkab2 protein_coding nonsense_mediated_decay MGP_AJ_T0062701.1 MGP_AJ_G0027605.1 mouse_genomes_project 3 95457386 95470113 + MGP_AJ_P0062701 Prkab2 protein_coding nonsense_mediated_decay MGP_AJ_T0062702.1 MGP_AJ_G0027605.1 mouse_genomes_project 3 95457532 95472995 + MGP_AJ_P0062702 Prkab2 protein_coding unknown_likely_coding MGP_AJ_T0062703.1 MGP_AJ_G0027605.1 mouse_genomes_project 3 95465709 95472285 + Prkab2 protein_coding retained_intron MGP_AJ_T0062704.1 MGP_AJ_G0027605.1 mouse_genomes_project 3 95466519 95472261 + Prkab2 protein_coding retained_intron MGP_AJ_T0062705.1 MGP_AJ_G0027605.1 mouse_genomes_project 3 95469377 95470228 + Prkab2 protein_coding processed_transcript MGP_AJ_T0061900.1 MGP_AJ_G0027398.1 mouse_genomes_project 3 86612301 86617969 + MGP_AJ_P0061900 unknown_likely_coding unknown_likely_coding MGP_AJ_T0007487.1 MGP_AJ_G0006130.1 mouse_genomes_project 3 20589267 20643688 + 4930412E21Rik lincRNA lincRNA MGP_AJ_T0064045.1 MGP_AJ_G0027888.1 mouse_genomes_project 3 136482578 136495255 + MGP_AJ_P0064045 Adh5 protein_coding protein_coding MGP_AJ_T0064046.1 MGP_AJ_G0027888.1 mouse_genomes_project 3 136482596 136485553 + Adh5 protein_coding retained_intron MGP_AJ_T0064047.1 MGP_AJ_G0027888.1 mouse_genomes_project 3 136482597 136486441 + Adh5 protein_coding retained_intron MGP_AJ_T0064048.1 MGP_AJ_G0027888.1 mouse_genomes_project 3 136482655 136485008 + Adh5 protein_coding retained_intron MGP_AJ_T0064049.1 MGP_AJ_G0027888.1 mouse_genomes_project 3 136482655 136487662 + MGP_AJ_P0064049 Adh5 protein_coding nonsense_mediated_decay MGP_AJ_T0064050.1 MGP_AJ_G0027888.1 mouse_genomes_project 3 136482666 136494444 + MGP_AJ_P0064050 Adh5 protein_coding nonsense_mediated_decay MGP_AJ_T0064051.1 MGP_AJ_G0027888.1 mouse_genomes_project 3 136494114 136494999 + Adh5 protein_coding retained_intron MGP_AJ_T0099856.1 MGP_AJ_G0037822.1 mouse_genomes_project 3 92641948 92642050 - Gm26279 snRNA snRNA MGP_AJ_T0061207.1 MGP_AJ_G0027257.1 mouse_genomes_project 3 66508941 66754788 + MGP_AJ_P0061207 Ppm1l protein_coding protein_coding MGP_AJ_T0061208.1 MGP_AJ_G0027257.1 mouse_genomes_project 3 66689604 66690366 + Ppm1l protein_coding retained_intron MGP_AJ_T0061209.1 MGP_AJ_G0027257.1 mouse_genomes_project 3 66736274 66746900 + Ppm1l protein_coding processed_transcript MGP_AJ_T0061210.1 MGP_AJ_G0027257.1 mouse_genomes_project 3 66742986 66747081 + Ppm1l protein_coding retained_intron MGP_AJ_T0007778.1 MGP_AJ_G0006358.1 mouse_genomes_project 3 149231091 149234243 + Gm43468 lincRNA lincRNA MGP_AJ_T0060396.1 MGP_AJ_G0027097.1 mouse_genomes_project 3 29652116 29673103 - MGP_AJ_P0060396 Kcnmb3 protein_coding protein_coding MGP_AJ_T0062609.1 MGP_AJ_G0027585.1 mouse_genomes_project 3 94366068 94392235 + MGP_AJ_P0062609 Lix1l protein_coding protein_coding MGP_AJ_T0062610.1 MGP_AJ_G0027585.1 mouse_genomes_project 3 94384478 94388293 + Lix1l protein_coding retained_intron MGP_AJ_T0102553.1 MGP_AJ_G0040295.1 mouse_genomes_project 3 88302748 88309850 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0063769.1 MGP_AJ_G0027832.1 mouse_genomes_project 3 127894493 127900978 - MGP_AJ_P0063769 Gar1 protein_coding protein_coding MGP_AJ_T0063770.1 MGP_AJ_G0027832.1 mouse_genomes_project 3 127894497 127898948 - MGP_AJ_P0063770 Gar1 protein_coding protein_coding MGP_AJ_T0063771.1 MGP_AJ_G0027832.1 mouse_genomes_project 3 127894500 127895256 - Gar1 protein_coding retained_intron MGP_AJ_T0063772.1 MGP_AJ_G0027832.1 mouse_genomes_project 3 127895133 127896862 - Gar1 protein_coding retained_intron MGP_AJ_T0063773.1 MGP_AJ_G0027832.1 mouse_genomes_project 3 127895152 127900942 - Gar1 protein_coding processed_transcript MGP_AJ_T0063774.1 MGP_AJ_G0027832.1 mouse_genomes_project 3 127896424 127900514 - MGP_AJ_P0063774 Gar1 protein_coding protein_coding MGP_AJ_T0014294.1 MGP_AJ_G0012389.1 mouse_genomes_project 3 121248480 121249168 + processed_pseudogene processed_pseudogene MGP_AJ_T0062015.1 MGP_AJ_G0027417.1 mouse_genomes_project 3 87343904 87363566 + MGP_AJ_P0062015 Tpm3 protein_coding protein_coding MGP_AJ_T0062016.1 MGP_AJ_G0027417.1 mouse_genomes_project 3 87350971 87361032 + Tpm3 protein_coding retained_intron MGP_AJ_T0062017.1 MGP_AJ_G0027417.1 mouse_genomes_project 3 87350971 87359234 + Tpm3 protein_coding retained_intron MGP_AJ_T0062018.1 MGP_AJ_G0027417.1 mouse_genomes_project 3 87351021 87370450 + MGP_AJ_P0062018 Tpm3 protein_coding protein_coding MGP_AJ_T0062019.1 MGP_AJ_G0027417.1 mouse_genomes_project 3 87351038 87371277 + MGP_AJ_P0062019 Tpm3 protein_coding protein_coding MGP_AJ_T0062020.1 MGP_AJ_G0027417.1 mouse_genomes_project 3 87357727 87358904 + Tpm3 protein_coding retained_intron MGP_AJ_T0062021.1 MGP_AJ_G0027417.1 mouse_genomes_project 3 87358665 87361243 + Tpm3 protein_coding retained_intron MGP_AJ_T0062022.1 MGP_AJ_G0027417.1 mouse_genomes_project 3 87358795 87359272 + Tpm3 protein_coding retained_intron MGP_AJ_T0062023.1 MGP_AJ_G0027417.1 mouse_genomes_project 3 87358812 87359957 + Tpm3 protein_coding retained_intron MGP_AJ_T0062024.1 MGP_AJ_G0027417.1 mouse_genomes_project 3 87359417 87361478 + Tpm3 protein_coding retained_intron MGP_AJ_T0062025.1 MGP_AJ_G0027417.1 mouse_genomes_project 3 87361066 87361908 + Tpm3 protein_coding retained_intron MGP_AJ_T0062026.1 MGP_AJ_G0027417.1 mouse_genomes_project 3 87361494 87370450 + Tpm3 protein_coding processed_transcript MGP_AJ_T0013997.1 MGP_AJ_G0012092.1 mouse_genomes_project 3 34258086 34258911 + processed_pseudogene processed_pseudogene MGP_AJ_T0014345.1 MGP_AJ_G0012440.1 mouse_genomes_project 3 136688832 136689021 - processed_pseudogene processed_pseudogene MGP_AJ_T0007658.1 MGP_AJ_G0006262.1 mouse_genomes_project 3 103764295 103766132 + Gm5547 lincRNA lincRNA MGP_AJ_T0007659.1 MGP_AJ_G0006262.1 mouse_genomes_project 3 103764322 103766125 + Gm5547 lincRNA lincRNA MGP_AJ_T0007660.1 MGP_AJ_G0006262.1 mouse_genomes_project 3 103765384 103766133 + Gm5547 lincRNA lincRNA MGP_AJ_T0010532.1 MGP_AJ_G0008654.1 mouse_genomes_project 3 91012650 91012759 - Gm22752 miRNA miRNA MGP_AJ_T0063974.1 MGP_AJ_G0027870.1 mouse_genomes_project 3 134731124 134862077 + Ppp3ca protein_coding processed_transcript MGP_AJ_T0063975.1 MGP_AJ_G0027870.1 mouse_genomes_project 3 134731124 135003025 + MGP_AJ_P0063975 Ppp3ca protein_coding protein_coding MGP_AJ_T0063976.1 MGP_AJ_G0027870.1 mouse_genomes_project 3 134731770 135001074 + MGP_AJ_P0063976 Ppp3ca protein_coding protein_coding MGP_AJ_T0063977.1 MGP_AJ_G0027870.1 mouse_genomes_project 3 134899510 134946293 + Ppp3ca protein_coding processed_transcript MGP_AJ_T0063978.1 MGP_AJ_G0027870.1 mouse_genomes_project 3 134945226 134947873 + Ppp3ca protein_coding retained_intron MGP_AJ_T0063979.1 MGP_AJ_G0027870.1 mouse_genomes_project 3 134952746 134954783 + Ppp3ca protein_coding retained_intron MGP_AJ_T0063980.1 MGP_AJ_G0027870.1 mouse_genomes_project 3 134967119 134993494 + Ppp3ca protein_coding processed_transcript MGP_AJ_T0063981.1 MGP_AJ_G0027870.1 mouse_genomes_project 3 134967935 134970446 + Ppp3ca protein_coding retained_intron MGP_AJ_T0007502.1 MGP_AJ_G0006144.1 mouse_genomes_project 3 31713205 31720144 - Gm42695 lincRNA lincRNA MGP_AJ_T0007603.1 MGP_AJ_G0006222.1 mouse_genomes_project 3 83265550 83268323 + Gm37933 lincRNA lincRNA MGP_AJ_T0004320.1 MGP_AJ_G0003784.1 mouse_genomes_project 3 100648641 100664530 - Tspan2os antisense antisense MGP_AJ_T0001240.1 MGP_AJ_G0001164.1 mouse_genomes_project 3 66307680 66310662 - TEC TEC MGP_AJ_T0013909.1 MGP_AJ_G0012004.1 mouse_genomes_project 3 5705771 5707001 - processed_pseudogene processed_pseudogene MGP_AJ_T0004408.1 MGP_AJ_G0003841.1 mouse_genomes_project 3 151142085 151142721 + Gm16231 antisense antisense MGP_AJ_T0062457.1 MGP_AJ_G0027547.1 mouse_genomes_project 3 93339852 93371256 + MGP_AJ_P0062457 Golph3l protein_coding protein_coding MGP_AJ_T0062458.1 MGP_AJ_G0027547.1 mouse_genomes_project 3 93339852 93371251 + MGP_AJ_P0062458 Golph3l protein_coding protein_coding MGP_AJ_T0062459.1 MGP_AJ_G0027547.1 mouse_genomes_project 3 93339852 93371256 + MGP_AJ_P0062459 Golph3l protein_coding protein_coding MGP_AJ_T0062460.1 MGP_AJ_G0027547.1 mouse_genomes_project 3 93339887 93369573 + MGP_AJ_P0062460 Golph3l protein_coding protein_coding MGP_AJ_T0062461.1 MGP_AJ_G0027547.1 mouse_genomes_project 3 93339887 93371250 + MGP_AJ_P0062461 Golph3l protein_coding protein_coding MGP_AJ_T0062462.1 MGP_AJ_G0027547.1 mouse_genomes_project 3 93339892 93371249 + MGP_AJ_P0062462 Golph3l protein_coding protein_coding MGP_AJ_T0062463.1 MGP_AJ_G0027547.1 mouse_genomes_project 3 93339899 93371250 + MGP_AJ_P0062463 Golph3l protein_coding nonsense_mediated_decay MGP_AJ_T0062464.1 MGP_AJ_G0027547.1 mouse_genomes_project 3 93339908 93369504 + MGP_AJ_P0062464 Golph3l protein_coding protein_coding MGP_AJ_T0060733.1 MGP_AJ_G0027150.1 mouse_genomes_project 3 43467108 43473557 - MGP_AJ_P0060733 Pabpc4l protein_coding protein_coding MGP_AJ_T0060734.1 MGP_AJ_G0027150.1 mouse_genomes_project 3 43467108 43473279 - MGP_AJ_P0060734 Pabpc4l protein_coding protein_coding MGP_AJ_T0060735.1 MGP_AJ_G0027150.1 mouse_genomes_project 3 43472012 43473279 - MGP_AJ_P0060735 Pabpc4l protein_coding protein_coding MGP_AJ_T0060736.1 MGP_AJ_G0027150.1 mouse_genomes_project 3 43472376 43473258 - MGP_AJ_P0060736 Pabpc4l protein_coding protein_coding MGP_AJ_T0013907.1 MGP_AJ_G0012002.1 mouse_genomes_project 3 5306921 5308773 + processed_pseudogene processed_pseudogene MGP_AJ_T0010518.1 MGP_AJ_G0008640.1 mouse_genomes_project 3 77789941 77790052 - Gm25749 miRNA miRNA MGP_AJ_T0061875.1 MGP_AJ_G0027393.1 mouse_genomes_project 3 86516975 86524778 - MGP_AJ_P0061875 Efna1 protein_coding protein_coding MGP_AJ_T0061876.1 MGP_AJ_G0027393.1 mouse_genomes_project 3 86516984 86524877 - MGP_AJ_P0061876 Efna1 protein_coding protein_coding MGP_AJ_T0062210.1 MGP_AJ_G0027499.1 mouse_genomes_project 3 91020211 91028722 + MGP_AJ_P0062210 Tchh protein_coding protein_coding MGP_AJ_T0014137.1 MGP_AJ_G0012232.1 mouse_genomes_project 3 75881028 75881873 + processed_pseudogene processed_pseudogene MGP_AJ_T0013918.1 MGP_AJ_G0012013.1 mouse_genomes_project 3 7358004 7358136 + processed_pseudogene processed_pseudogene MGP_AJ_T0014065.1 MGP_AJ_G0012160.1 mouse_genomes_project 3 55732000 55732912 - processed_pseudogene processed_pseudogene MGP_AJ_T0007583.1 MGP_AJ_G0006205.1 mouse_genomes_project 3 73099247 73142913 + Gm37256 lincRNA lincRNA MGP_AJ_T0060432.1 MGP_AJ_G0027102.1 mouse_genomes_project 3 29918916 29932203 - MGP_AJ_P0060432 Mrpl47 protein_coding protein_coding MGP_AJ_T0060433.1 MGP_AJ_G0027102.1 mouse_genomes_project 3 29921094 29926029 - Mrpl47 protein_coding processed_transcript MGP_AJ_T0060434.1 MGP_AJ_G0027102.1 mouse_genomes_project 3 29931156 29932659 - Mrpl47 protein_coding retained_intron MGP_AJ_T0014076.1 MGP_AJ_G0012171.1 mouse_genomes_project 3 58481323 58481615 - processed_pseudogene processed_pseudogene MGP_AJ_T0007689.1 MGP_AJ_G0006284.1 mouse_genomes_project 3 119775361 119785748 - Gm43608 lincRNA lincRNA MGP_AJ_T0062212.1 MGP_AJ_G0027501.1 mouse_genomes_project 3 91099222 91105105 + MGP_AJ_P0062212 S100a11 protein_coding protein_coding MGP_AJ_T0102552.1 MGP_AJ_G0040294.1 mouse_genomes_project 3 88140204 88142087 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0064167.1 MGP_AJ_G0027910.1 mouse_genomes_project 3 142801776 142817334 - MGP_AJ_P0064167 protein_coding unknown_likely_coding MGP_AJ_T0001195.1 MGP_AJ_G0001120.1 mouse_genomes_project 3 48775478 48780443 - TEC TEC MGP_AJ_T0014187.1 MGP_AJ_G0012282.1 mouse_genomes_project 3 93103858 93104052 + processed_pseudogene processed_pseudogene MGP_AJ_T0007580.1 MGP_AJ_G0006203.1 mouse_genomes_project 3 72793994 72803909 - Platr10 lincRNA lincRNA MGP_AJ_T0007581.1 MGP_AJ_G0006203.1 mouse_genomes_project 3 72794388 72795201 - Platr10 lincRNA lincRNA MGP_AJ_T0004284.1 MGP_AJ_G0003759.1 mouse_genomes_project 3 87173778 87174916 + Gm42809 antisense antisense MGP_AJ_T0062750.1 MGP_AJ_G0027621.1 mouse_genomes_project 3 97009141 97086347 + MGP_AJ_P0062750 Wars2 protein_coding protein_coding MGP_AJ_T0062751.1 MGP_AJ_G0027621.1 mouse_genomes_project 3 97009183 97088643 + MGP_AJ_P0062751 Wars2 protein_coding nonsense_mediated_decay MGP_AJ_T0062752.1 MGP_AJ_G0027621.1 mouse_genomes_project 3 97009204 97109031 + MGP_AJ_P0062752 Wars2 protein_coding nonsense_mediated_decay MGP_AJ_T0062753.1 MGP_AJ_G0027621.1 mouse_genomes_project 3 97009207 97086041 + MGP_AJ_P0062753 Wars2 protein_coding protein_coding MGP_AJ_T0062754.1 MGP_AJ_G0027621.1 mouse_genomes_project 3 97009276 97075063 + Wars2 protein_coding retained_intron MGP_AJ_T0011533.1 MGP_AJ_G0009655.1 mouse_genomes_project 3 21811044 21811310 + Gm24062 misc_RNA misc_RNA MGP_AJ_T0099013.1 MGP_AJ_G0036990.1 mouse_genomes_project 3 127275460 127276936 + Gm27195 sense_intronic sense_intronic MGP_AJ_T0001270.1 MGP_AJ_G0001194.1 mouse_genomes_project 3 94237926 94240791 - TEC TEC MGP_AJ_T0014155.1 MGP_AJ_G0012250.1 mouse_genomes_project 3 84050243 84050539 - processed_pseudogene processed_pseudogene MGP_AJ_T0007591.1 MGP_AJ_G0006211.1 mouse_genomes_project 3 78129208 78130031 + Gm42476 lincRNA lincRNA MGP_AJ_T0064258.1 MGP_AJ_G0027932.1 mouse_genomes_project 3 144628140 144633906 + MGP_AJ_P0064258 Gng5 protein_coding protein_coding MGP_AJ_T0064259.1 MGP_AJ_G0027932.1 mouse_genomes_project 3 144628223 144633881 + MGP_AJ_P0064259 Gng5 protein_coding protein_coding MGP_AJ_T0064260.1 MGP_AJ_G0027932.1 mouse_genomes_project 3 144628442 144633882 + MGP_AJ_P0064260 Gng5 protein_coding protein_coding MGP_AJ_T0001275.1 MGP_AJ_G0001199.1 mouse_genomes_project 3 95208811 95209774 + TEC TEC MGP_AJ_T0001360.1 MGP_AJ_G0001283.1 mouse_genomes_project 3 133448941 133451637 - TEC TEC MGP_AJ_T0062768.1 MGP_AJ_G0027625.1 mouse_genomes_project 3 98063849 98112325 + MGP_AJ_P0062768 Gdap2 protein_coding protein_coding MGP_AJ_T0062769.1 MGP_AJ_G0027625.1 mouse_genomes_project 3 98063986 98107816 + MGP_AJ_P0062769 Gdap2 protein_coding protein_coding MGP_AJ_T0062770.1 MGP_AJ_G0027625.1 mouse_genomes_project 3 98064012 98071421 + Gdap2 protein_coding processed_transcript MGP_AJ_T0062771.1 MGP_AJ_G0027625.1 mouse_genomes_project 3 98099931 98111999 + MGP_AJ_P0062771 Gdap2 protein_coding protein_coding MGP_AJ_T0062772.1 MGP_AJ_G0027625.1 mouse_genomes_project 3 98106032 98107816 + Gdap2 protein_coding retained_intron MGP_AJ_T0014199.1 MGP_AJ_G0012294.1 mouse_genomes_project 3 94232773 94233890 + processed_pseudogene processed_pseudogene MGP_AJ_T0063629.1 MGP_AJ_G0027811.1 mouse_genomes_project 3 122351700 122355589 + MGP_AJ_P0063629 Tram1l1 protein_coding protein_coding MGP_AJ_T0014368.1 MGP_AJ_G0012463.1 mouse_genomes_project 3 144936863 144937542 + processed_pseudogene processed_pseudogene MGP_AJ_T0004290.1 MGP_AJ_G0003765.1 mouse_genomes_project 3 92696064 92698999 - B230398E01Rik antisense antisense MGP_AJ_T0001114.1 MGP_AJ_G0001040.1 mouse_genomes_project 3 7782712 7784499 + TEC TEC MGP_AJ_T0101103.1 MGP_AJ_G0039069.1 mouse_genomes_project 3 4603380 4603497 - Gm23592 snoRNA snoRNA MGP_AJ_T0007483.1 MGP_AJ_G0006126.1 mouse_genomes_project 3 19153422 19154188 - Gm43674 lincRNA lincRNA MGP_AJ_T0098956.1 MGP_AJ_G0036934.1 mouse_genomes_project 3 76665731 76666593 - Gm3513 sense_intronic sense_intronic MGP_AJ_T0014052.1 MGP_AJ_G0012147.1 mouse_genomes_project 3 51686407 51688095 - processed_pseudogene processed_pseudogene MGP_AJ_T0014056.1 MGP_AJ_G0012151.1 mouse_genomes_project 3 54399846 54400865 + processed_pseudogene processed_pseudogene MGP_AJ_T0001330.1 MGP_AJ_G0001254.1 mouse_genomes_project 3 125081025 125084210 - TEC TEC MGP_AJ_T0063676.1 MGP_AJ_G0027818.1 mouse_genomes_project 3 124953366 125030573 - MGP_AJ_P0063676 protein_coding protein_coding MGP_AJ_T0063677.1 MGP_AJ_G0027818.1 mouse_genomes_project 3 124953368 124955749 - protein_coding retained_intron MGP_AJ_T0063678.1 MGP_AJ_G0027818.1 mouse_genomes_project 3 124953368 124975178 - MGP_AJ_P0063678 protein_coding protein_coding MGP_AJ_T0063679.1 MGP_AJ_G0027818.1 mouse_genomes_project 3 124955688 124961655 - MGP_AJ_P0063679 protein_coding protein_coding MGP_AJ_T0063680.1 MGP_AJ_G0027818.1 mouse_genomes_project 3 124955689 124961655 - MGP_AJ_P0063680 protein_coding protein_coding MGP_AJ_T0063681.1 MGP_AJ_G0027818.1 mouse_genomes_project 3 124957443 124960211 - protein_coding retained_intron MGP_AJ_T0063682.1 MGP_AJ_G0027818.1 mouse_genomes_project 3 124965025 124966947 - protein_coding retained_intron MGP_AJ_T0063683.1 MGP_AJ_G0027818.1 mouse_genomes_project 3 124969563 124988235 - MGP_AJ_P0063683 protein_coding protein_coding MGP_AJ_T0063684.1 MGP_AJ_G0027818.1 mouse_genomes_project 3 124971910 124988034 - MGP_AJ_P0063684 protein_coding nonsense_mediated_decay MGP_AJ_T0063685.1 MGP_AJ_G0027818.1 mouse_genomes_project 3 124978903 125447358 - MGP_AJ_P0063685 protein_coding protein_coding MGP_AJ_T0063686.1 MGP_AJ_G0027818.1 mouse_genomes_project 3 124981962 125030549 - protein_coding retained_intron MGP_AJ_T0063687.1 MGP_AJ_G0027818.1 mouse_genomes_project 3 124991189 125539551 - MGP_AJ_P0063687 protein_coding protein_coding MGP_AJ_T0063688.1 MGP_AJ_G0027818.1 mouse_genomes_project 3 124991979 125447297 - MGP_AJ_P0063688 protein_coding protein_coding MGP_AJ_T0063689.1 MGP_AJ_G0027818.1 mouse_genomes_project 3 125047338 125056276 - protein_coding retained_intron MGP_AJ_T0063690.1 MGP_AJ_G0027818.1 mouse_genomes_project 3 125056801 125447330 - MGP_AJ_P0063690 protein_coding protein_coding MGP_AJ_T0063691.1 MGP_AJ_G0027818.1 mouse_genomes_project 3 125056871 125447330 - MGP_AJ_P0063691 protein_coding protein_coding MGP_AJ_T0063692.1 MGP_AJ_G0027818.1 mouse_genomes_project 3 125063340 125194021 - MGP_AJ_P0063692 protein_coding protein_coding MGP_AJ_T0063693.1 MGP_AJ_G0027818.1 mouse_genomes_project 3 125063340 125447266 - MGP_AJ_P0063693 protein_coding protein_coding MGP_AJ_T0063694.1 MGP_AJ_G0027818.1 mouse_genomes_project 3 125114878 125256974 - MGP_AJ_P0063694 protein_coding protein_coding MGP_AJ_T0063695.1 MGP_AJ_G0027818.1 mouse_genomes_project 3 125115483 125193914 - protein_coding retained_intron MGP_AJ_T0063696.1 MGP_AJ_G0027818.1 mouse_genomes_project 3 125117293 125447253 - MGP_AJ_P0063696 protein_coding protein_coding MGP_AJ_T0063697.1 MGP_AJ_G0027818.1 mouse_genomes_project 3 125191394 125193880 - protein_coding retained_intron MGP_AJ_T0063698.1 MGP_AJ_G0027818.1 mouse_genomes_project 3 125369478 125447294 - protein_coding retained_intron MGP_AJ_T0063699.1 MGP_AJ_G0027818.1 mouse_genomes_project 3 125371108 125539203 - protein_coding retained_intron MGP_AJ_T0063700.1 MGP_AJ_G0027818.1 mouse_genomes_project 3 125536307 125539461 - protein_coding retained_intron MGP_AJ_T0063701.1 MGP_AJ_G0027818.1 mouse_genomes_project 3 125538863 125539202 - MGP_AJ_P0063701 protein_coding protein_coding MGP_AJ_T0060131.1 MGP_AJ_G0027041.1 mouse_genomes_project 3 11865984 11909569 - MGP_AJ_P0060131 Car1 protein_coding protein_coding MGP_AJ_T0060132.1 MGP_AJ_G0027041.1 mouse_genomes_project 3 11865985 11878528 - MGP_AJ_P0060132 Car1 protein_coding protein_coding MGP_AJ_T0060133.1 MGP_AJ_G0027041.1 mouse_genomes_project 3 11870124 11909572 - MGP_AJ_P0060133 Car1 protein_coding protein_coding MGP_AJ_T0060828.1 MGP_AJ_G0027170.1 mouse_genomes_project 3 51192886 51216800 + Trpc4 protein_coding processed_transcript MGP_AJ_T0060829.1 MGP_AJ_G0027170.1 mouse_genomes_project 3 51192908 51360234 + MGP_AJ_P0060829 Trpc4 protein_coding protein_coding MGP_AJ_T0060830.1 MGP_AJ_G0027170.1 mouse_genomes_project 3 51192917 51309716 + Trpc4 protein_coding retained_intron MGP_AJ_T0060831.1 MGP_AJ_G0027170.1 mouse_genomes_project 3 51192955 51360230 + MGP_AJ_P0060831 Trpc4 protein_coding protein_coding MGP_AJ_T0060832.1 MGP_AJ_G0027170.1 mouse_genomes_project 3 51193224 51265377 + Trpc4 protein_coding retained_intron MGP_AJ_T0060833.1 MGP_AJ_G0027170.1 mouse_genomes_project 3 51193466 51360179 + MGP_AJ_P0060833 Trpc4 protein_coding nonsense_mediated_decay MGP_AJ_T0060363.1 MGP_AJ_G0027089.1 mouse_genomes_project 3 28036826 28109722 - MGP_AJ_P0060363 Phc3 protein_coding protein_coding MGP_AJ_T0060364.1 MGP_AJ_G0027089.1 mouse_genomes_project 3 28036979 28109726 - MGP_AJ_P0060364 Phc3 protein_coding nonsense_mediated_decay MGP_AJ_T0060365.1 MGP_AJ_G0027089.1 mouse_genomes_project 3 28044239 28109726 - MGP_AJ_P0060365 Phc3 protein_coding protein_coding MGP_AJ_T0060366.1 MGP_AJ_G0027089.1 mouse_genomes_project 3 28044440 28109726 - MGP_AJ_P0060366 Phc3 protein_coding nonsense_mediated_decay MGP_AJ_T0060367.1 MGP_AJ_G0027089.1 mouse_genomes_project 3 28044766 28109720 - MGP_AJ_P0060367 Phc3 protein_coding protein_coding MGP_AJ_T0060368.1 MGP_AJ_G0027089.1 mouse_genomes_project 3 28044766 28109720 - MGP_AJ_P0060368 Phc3 protein_coding protein_coding MGP_AJ_T0060369.1 MGP_AJ_G0027089.1 mouse_genomes_project 3 28044766 28109720 - MGP_AJ_P0060369 Phc3 protein_coding protein_coding MGP_AJ_T0060370.1 MGP_AJ_G0027089.1 mouse_genomes_project 3 28059473 28071954 - Phc3 protein_coding retained_intron MGP_AJ_T0060371.1 MGP_AJ_G0027089.1 mouse_genomes_project 3 28067802 28109736 - MGP_AJ_P0060371 Phc3 protein_coding protein_coding MGP_AJ_T0060372.1 MGP_AJ_G0027089.1 mouse_genomes_project 3 28098640 28106261 - Phc3 protein_coding retained_intron MGP_AJ_T0061411.1 MGP_AJ_G0027307.1 mouse_genomes_project 3 81603756 81690708 - MGP_AJ_P0061411 protein_coding protein_coding MGP_AJ_T0061413.1 MGP_AJ_G0027307.1 mouse_genomes_project 3 81604867 81690659 - MGP_AJ_P0061413 protein_coding protein_coding MGP_AJ_T0061414.1 MGP_AJ_G0027307.1 mouse_genomes_project 3 81605399 81690799 - MGP_AJ_P0061414 protein_coding protein_coding MGP_AJ_T0062106.1 MGP_AJ_G0027432.1 mouse_genomes_project 3 87805261 87808620 - MGP_AJ_P0062106 S100a1 protein_coding protein_coding MGP_AJ_T0062107.1 MGP_AJ_G0027432.1 mouse_genomes_project 3 87805264 87808506 - MGP_AJ_P0062107 S100a1 protein_coding protein_coding MGP_AJ_T0062152.1 MGP_AJ_G0027454.1 mouse_genomes_project 3 89763333 89766482 + MGP_AJ_P0062152 Sprr2a2 protein_coding protein_coding MGP_AJ_T0062154.1 MGP_AJ_G0027454.1 mouse_genomes_project 3 89764050 89764729 + MGP_AJ_P0062154 Sprr2a2 protein_coding protein_coding MGP_AJ_T0098672.1 MGP_AJ_G0036656.1 mouse_genomes_project 3 94259341 94259458 + Gm28001 rRNA rRNA MGP_AJ_T0001271.1 MGP_AJ_G0001195.1 mouse_genomes_project 3 94495741 94496536 - TEC TEC MGP_AJ_T0099821.1 MGP_AJ_G0037787.1 mouse_genomes_project 3 46701272 46701379 + Gm23096 snRNA snRNA MGP_AJ_T0061364.1 MGP_AJ_G0027298.1 mouse_genomes_project 3 80149160 80165710 + MGP_AJ_P0061364 Plrg1 protein_coding protein_coding MGP_AJ_T0061365.1 MGP_AJ_G0027298.1 mouse_genomes_project 3 80149170 80165644 + MGP_AJ_P0061365 Plrg1 protein_coding nonsense_mediated_decay MGP_AJ_T0061366.1 MGP_AJ_G0027298.1 mouse_genomes_project 3 80149193 80165527 + MGP_AJ_P0061366 Plrg1 protein_coding protein_coding MGP_AJ_T0061367.1 MGP_AJ_G0027298.1 mouse_genomes_project 3 80161389 80162411 + Plrg1 protein_coding retained_intron MGP_AJ_T0061368.1 MGP_AJ_G0027298.1 mouse_genomes_project 3 80162318 80163508 + Plrg1 protein_coding retained_intron MGP_AJ_T0099890.1 MGP_AJ_G0037856.1 mouse_genomes_project 3 155620097 155620204 + Gm22458 snRNA snRNA MGP_AJ_T0001203.1 MGP_AJ_G0001127.1 mouse_genomes_project 3 49013243 49013862 - TEC TEC MGP_AJ_T0063982.1 MGP_AJ_G0027871.1 mouse_genomes_project 3 135421891 135507845 + MGP_AJ_P0063982 Emcn protein_coding protein_coding MGP_AJ_T0063983.1 MGP_AJ_G0027871.1 mouse_genomes_project 3 135421914 135497602 + Emcn protein_coding retained_intron MGP_AJ_T0063984.1 MGP_AJ_G0027871.1 mouse_genomes_project 3 135421967 135506729 + MGP_AJ_P0063984 Emcn protein_coding protein_coding MGP_AJ_T0063985.1 MGP_AJ_G0027871.1 mouse_genomes_project 3 135421998 135503004 + MGP_AJ_P0063985 Emcn protein_coding protein_coding MGP_AJ_T0062898.1 MGP_AJ_G0027652.1 mouse_genomes_project 3 101216858 101296976 + MGP_AJ_P0062898 Trim33 protein_coding protein_coding MGP_AJ_T0062899.1 MGP_AJ_G0027652.1 mouse_genomes_project 3 101249320 101266989 + MGP_AJ_P0062899 Trim33 protein_coding protein_coding MGP_AJ_T0062900.1 MGP_AJ_G0027652.1 mouse_genomes_project 3 101259308 101264262 + Trim33 protein_coding retained_intron MGP_AJ_T0062901.1 MGP_AJ_G0027652.1 mouse_genomes_project 3 101263918 101265271 + Trim33 protein_coding retained_intron MGP_AJ_T0062902.1 MGP_AJ_G0027652.1 mouse_genomes_project 3 101264010 101292357 + MGP_AJ_P0062902 Trim33 protein_coding nonsense_mediated_decay MGP_AJ_T0062568.1 MGP_AJ_G0027564.1 mouse_genomes_project 3 93928925 93938666 + Mtmr11 protein_coding retained_intron MGP_AJ_T0062569.1 MGP_AJ_G0027564.1 mouse_genomes_project 3 93928925 93938667 + MGP_AJ_P0062569 Mtmr11 protein_coding protein_coding MGP_AJ_T0062570.1 MGP_AJ_G0027564.1 mouse_genomes_project 3 93929006 93938667 + MGP_AJ_P0062570 Mtmr11 protein_coding nonsense_mediated_decay MGP_AJ_T0062571.1 MGP_AJ_G0027564.1 mouse_genomes_project 3 93929087 93930315 + Mtmr11 protein_coding retained_intron MGP_AJ_T0062572.1 MGP_AJ_G0027564.1 mouse_genomes_project 3 93929507 93938667 + Mtmr11 protein_coding processed_transcript MGP_AJ_T0062573.1 MGP_AJ_G0027564.1 mouse_genomes_project 3 93935824 93936943 + Mtmr11 protein_coding processed_transcript MGP_AJ_T0062574.1 MGP_AJ_G0027564.1 mouse_genomes_project 3 93937534 93938419 + Mtmr11 protein_coding processed_transcript MGP_AJ_T0101115.1 MGP_AJ_G0039081.1 mouse_genomes_project 3 36936787 36936872 - Gm23831 snoRNA snoRNA MGP_AJ_T0013938.1 MGP_AJ_G0012033.1 mouse_genomes_project 3 12067724 12068708 - processed_pseudogene processed_pseudogene MGP_AJ_T0060220.1 MGP_AJ_G0027064.1 mouse_genomes_project 3 19232902 19375057 + MGP_AJ_P0060220 Tbl1xr1 protein_coding protein_coding MGP_AJ_T0060221.1 MGP_AJ_G0027064.1 mouse_genomes_project 3 19232977 19371214 + MGP_AJ_P0060221 Tbl1xr1 protein_coding protein_coding MGP_AJ_T0060222.1 MGP_AJ_G0027064.1 mouse_genomes_project 3 19233006 19346900 + Tbl1xr1 protein_coding processed_transcript MGP_AJ_T0060223.1 MGP_AJ_G0027064.1 mouse_genomes_project 3 19233082 19349318 + MGP_AJ_P0060223 Tbl1xr1 protein_coding protein_coding MGP_AJ_T0060224.1 MGP_AJ_G0027064.1 mouse_genomes_project 3 19233131 19348199 + Tbl1xr1 protein_coding processed_transcript MGP_AJ_T0060225.1 MGP_AJ_G0027064.1 mouse_genomes_project 3 19233186 19346868 + MGP_AJ_P0060225 Tbl1xr1 protein_coding protein_coding MGP_AJ_T0060226.1 MGP_AJ_G0027064.1 mouse_genomes_project 3 19233534 19373756 + MGP_AJ_P0060226 Tbl1xr1 protein_coding protein_coding MGP_AJ_T0060227.1 MGP_AJ_G0027064.1 mouse_genomes_project 3 19272356 19370431 + MGP_AJ_P0060227 Tbl1xr1 protein_coding protein_coding MGP_AJ_T0060228.1 MGP_AJ_G0027064.1 mouse_genomes_project 3 19297248 19348192 + MGP_AJ_P0060228 Tbl1xr1 protein_coding protein_coding MGP_AJ_T0060229.1 MGP_AJ_G0027064.1 mouse_genomes_project 3 19306918 19371538 + MGP_AJ_P0060229 Tbl1xr1 protein_coding nonsense_mediated_decay MGP_AJ_T0060230.1 MGP_AJ_G0027064.1 mouse_genomes_project 3 19361654 19369042 + MGP_AJ_P0060230 Tbl1xr1 protein_coding protein_coding MGP_AJ_T0001185.1 MGP_AJ_G0001111.1 mouse_genomes_project 3 48285206 48286831 + TEC TEC MGP_AJ_T0063138.1 MGP_AJ_G0027711.1 mouse_genomes_project 3 105638570 105649207 + MGP_AJ_P0063138 Alx3 protein_coding protein_coding MGP_AJ_T0001111.1 MGP_AJ_G0001037.1 mouse_genomes_project 3 6599874 6603641 + TEC TEC MGP_AJ_T0001162.1 MGP_AJ_G0001088.1 mouse_genomes_project 3 37893723 37894686 - TEC TEC MGP_AJ_T0001306.1 MGP_AJ_G0001230.1 mouse_genomes_project 3 119838495 119842098 - TEC TEC MGP_AJ_T0001134.1 MGP_AJ_G0001060.1 mouse_genomes_project 3 27719513 27720403 - TEC TEC MGP_AJ_T0064328.1 MGP_AJ_G0027944.1 mouse_genomes_project 3 149981575 150023881 - MGP_AJ_P0064328 Ptgfr protein_coding protein_coding MGP_AJ_T0064329.1 MGP_AJ_G0027944.1 mouse_genomes_project 3 149986457 150022216 - MGP_AJ_P0064329 Ptgfr protein_coding protein_coding MGP_AJ_T0064330.1 MGP_AJ_G0027944.1 mouse_genomes_project 3 149986829 150020348 - Ptgfr protein_coding processed_transcript MGP_AJ_T0017980.1 MGP_AJ_G0015494.1 mouse_genomes_project 3 104517688 104521678 - 2010016I18Rik processed_transcript antisense MGP_AJ_T0017981.1 MGP_AJ_G0015494.1 mouse_genomes_project 3 104517706 104519591 - 2010016I18Rik processed_transcript antisense MGP_AJ_T0017982.1 MGP_AJ_G0015494.1 mouse_genomes_project 3 104517719 104519144 - 2010016I18Rik processed_transcript processed_transcript MGP_AJ_T0017983.1 MGP_AJ_G0015494.1 mouse_genomes_project 3 104517719 104519218 - 2010016I18Rik processed_transcript retained_intron MGP_AJ_T0017984.1 MGP_AJ_G0015494.1 mouse_genomes_project 3 104519826 104521613 - 2010016I18Rik processed_transcript retained_intron MGP_AJ_T0013900.1 MGP_AJ_G0011995.1 mouse_genomes_project 3 3296333 3299263 - processed_pseudogene processed_pseudogene MGP_AJ_T0014324.1 MGP_AJ_G0012419.1 mouse_genomes_project 3 132989431 132989885 + processed_pseudogene processed_pseudogene MGP_AJ_T0007541.1 MGP_AJ_G0006172.1 mouse_genomes_project 3 48067638 48083796 - Gm29230 lincRNA lincRNA MGP_AJ_T0063823.1 MGP_AJ_G0027843.1 mouse_genomes_project 3 129177307 129293757 + MGP_AJ_P0063823 Lef1 protein_coding protein_coding MGP_AJ_T0063824.1 MGP_AJ_G0027843.1 mouse_genomes_project 3 129177307 129293757 + MGP_AJ_P0063824 Lef1 protein_coding protein_coding MGP_AJ_T0063825.1 MGP_AJ_G0027843.1 mouse_genomes_project 3 129177307 129293757 + MGP_AJ_P0063825 Lef1 protein_coding protein_coding MGP_AJ_T0063826.1 MGP_AJ_G0027843.1 mouse_genomes_project 3 129179639 129184230 + Lef1 protein_coding retained_intron MGP_AJ_T0063827.1 MGP_AJ_G0027843.1 mouse_genomes_project 3 129179639 129293757 + MGP_AJ_P0063827 Lef1 protein_coding protein_coding MGP_AJ_T0063828.1 MGP_AJ_G0027843.1 mouse_genomes_project 3 129179648 129256842 + Lef1 protein_coding retained_intron MGP_AJ_T0063829.1 MGP_AJ_G0027843.1 mouse_genomes_project 3 129180656 129253504 + Lef1 protein_coding retained_intron MGP_AJ_T0063830.1 MGP_AJ_G0027843.1 mouse_genomes_project 3 129180698 129275017 + Lef1 protein_coding processed_transcript MGP_AJ_T0099817.1 MGP_AJ_G0037783.1 mouse_genomes_project 3 41983480 41983585 + Gm24997 snRNA snRNA MGP_AJ_T0064424.1 MGP_AJ_G0027955.1 mouse_genomes_project 3 151399612 151937317 - MGP_AJ_P0064424 St6galnac3 protein_coding protein_coding MGP_AJ_T0064425.1 MGP_AJ_G0027955.1 mouse_genomes_project 3 151406718 151427439 - MGP_AJ_P0064425 St6galnac3 protein_coding protein_coding MGP_AJ_T0064426.1 MGP_AJ_G0027955.1 mouse_genomes_project 3 151407969 151937256 - MGP_AJ_P0064426 St6galnac3 protein_coding protein_coding MGP_AJ_T0064427.1 MGP_AJ_G0027955.1 mouse_genomes_project 3 151714895 151715761 - St6galnac3 protein_coding retained_intron MGP_AJ_T0064428.1 MGP_AJ_G0027955.1 mouse_genomes_project 3 151715150 151933139 - St6galnac3 protein_coding retained_intron MGP_AJ_T0007507.1 MGP_AJ_G0006148.1 mouse_genomes_project 3 32389403 32408653 - Gm43003 lincRNA lincRNA MGP_AJ_T0007696.1 MGP_AJ_G0006289.1 mouse_genomes_project 3 122857352 122952136 + Gm42825 lincRNA lincRNA MGP_AJ_T0014192.1 MGP_AJ_G0012287.1 mouse_genomes_project 3 93533574 93533721 + processed_pseudogene processed_pseudogene MGP_AJ_T0062029.1 MGP_AJ_G0027419.1 mouse_genomes_project 3 87488951 87490019 - MGP_AJ_P0062029 protein_coding protein_coding MGP_AJ_T0062030.1 MGP_AJ_G0027419.1 mouse_genomes_project 3 87489096 87490351 - protein_coding retained_intron MGP_AJ_T0062031.1 MGP_AJ_G0027419.1 mouse_genomes_project 3 87489096 87490352 - protein_coding retained_intron MGP_AJ_T0062032.1 MGP_AJ_G0027419.1 mouse_genomes_project 3 87489096 87490365 - MGP_AJ_P0062032 protein_coding protein_coding MGP_AJ_T0062033.1 MGP_AJ_G0027419.1 mouse_genomes_project 3 87489100 87490341 - protein_coding retained_intron MGP_AJ_T0062034.1 MGP_AJ_G0027419.1 mouse_genomes_project 3 87489100 87490366 - MGP_AJ_P0062034 protein_coding protein_coding MGP_AJ_T0062035.1 MGP_AJ_G0027419.1 mouse_genomes_project 3 87489100 87490369 - MGP_AJ_P0062035 protein_coding protein_coding MGP_AJ_T0062036.1 MGP_AJ_G0027419.1 mouse_genomes_project 3 87489376 87490364 - protein_coding retained_intron MGP_AJ_T0062037.1 MGP_AJ_G0027419.1 mouse_genomes_project 3 87489765 87490363 - protein_coding retained_intron MGP_AJ_T0060039.1 MGP_AJ_G0027013.1 mouse_genomes_project 3 4462764 4537324 + MGP_AJ_P0060039 Pkia protein_coding protein_coding MGP_AJ_T0060040.1 MGP_AJ_G0027013.1 mouse_genomes_project 3 4462765 4545118 + MGP_AJ_P0060040 Pkia protein_coding protein_coding MGP_AJ_T0060041.1 MGP_AJ_G0027013.1 mouse_genomes_project 3 4528977 4542164 + MGP_AJ_P0060041 Pkia protein_coding protein_coding MGP_AJ_T0064331.1 MGP_AJ_G0027945.1 mouse_genomes_project 3 150283771 150298891 - Gipc2 protein_coding processed_transcript MGP_AJ_T0064332.1 MGP_AJ_G0027945.1 mouse_genomes_project 3 150284077 150358190 - MGP_AJ_P0064332 Gipc2 protein_coding protein_coding MGP_AJ_T0064333.1 MGP_AJ_G0027945.1 mouse_genomes_project 3 150284079 150297363 - Gipc2 protein_coding processed_transcript MGP_AJ_T0064334.1 MGP_AJ_G0027945.1 mouse_genomes_project 3 150284120 150296911 - Gipc2 protein_coding processed_transcript MGP_AJ_T0064335.1 MGP_AJ_G0027945.1 mouse_genomes_project 3 150284257 150293185 - Gipc2 protein_coding retained_intron MGP_AJ_T0064336.1 MGP_AJ_G0027945.1 mouse_genomes_project 3 150284432 150338667 - Gipc2 protein_coding processed_transcript MGP_AJ_T0064337.1 MGP_AJ_G0027945.1 mouse_genomes_project 3 150292204 150298705 - Gipc2 protein_coding retained_intron MGP_AJ_T0064338.1 MGP_AJ_G0027945.1 mouse_genomes_project 3 150321168 150357710 - Gipc2 protein_coding processed_transcript MGP_AJ_T0061908.1 MGP_AJ_G0027400.1 mouse_genomes_project 3 86648059 86649865 - MGP_AJ_P0061908 Lenep protein_coding protein_coding MGP_AJ_T0014146.1 MGP_AJ_G0012241.1 mouse_genomes_project 3 79756458 79757038 - processed_pseudogene processed_pseudogene MGP_AJ_T0014198.1 MGP_AJ_G0012293.1 mouse_genomes_project 3 94192126 94192578 - processed_pseudogene processed_pseudogene MGP_AJ_T0010509.1 MGP_AJ_G0008631.1 mouse_genomes_project 3 35704892 35704998 - Gm24462 miRNA miRNA MGP_AJ_T0064429.1 MGP_AJ_G0027956.1 mouse_genomes_project 3 152060893 152071760 + MGP_AJ_P0064429 Asb17 protein_coding protein_coding MGP_AJ_T0064430.1 MGP_AJ_G0027956.1 mouse_genomes_project 3 152060950 152070289 + MGP_AJ_P0064430 Asb17 protein_coding nonsense_mediated_decay MGP_AJ_T0061740.1 MGP_AJ_G0027373.1 mouse_genomes_project 3 86009864 86146638 + MGP_AJ_P0061740 protein_coding unknown_likely_coding MGP_AJ_T0061741.1 MGP_AJ_G0027373.1 mouse_genomes_project 3 86018073 86137734 + protein_coding retained_intron MGP_AJ_T0062511.1 MGP_AJ_G0027554.1 mouse_genomes_project 3 93583255 93609003 - MGP_AJ_P0062511 Prpf3 protein_coding protein_coding MGP_AJ_T0062512.1 MGP_AJ_G0027554.1 mouse_genomes_project 3 93583720 93588796 - MGP_AJ_P0062512 Prpf3 protein_coding protein_coding MGP_AJ_T0062513.1 MGP_AJ_G0027554.1 mouse_genomes_project 3 93583749 93602697 - Prpf3 protein_coding retained_intron MGP_AJ_T0062514.1 MGP_AJ_G0027554.1 mouse_genomes_project 3 93583753 93585939 - Prpf3 protein_coding retained_intron MGP_AJ_T0062515.1 MGP_AJ_G0027554.1 mouse_genomes_project 3 93583753 93608871 - MGP_AJ_P0062515 Prpf3 protein_coding protein_coding MGP_AJ_T0062516.1 MGP_AJ_G0027554.1 mouse_genomes_project 3 93589619 93598290 - Prpf3 protein_coding processed_transcript MGP_AJ_T0062517.1 MGP_AJ_G0027554.1 mouse_genomes_project 3 93596927 93599299 - Prpf3 protein_coding retained_intron MGP_AJ_T0062518.1 MGP_AJ_G0027554.1 mouse_genomes_project 3 93600565 93606755 - MGP_AJ_P0062518 Prpf3 protein_coding nonsense_mediated_decay MGP_AJ_T0062519.1 MGP_AJ_G0027554.1 mouse_genomes_project 3 93602658 93608899 - Prpf3 protein_coding retained_intron MGP_AJ_T0004234.1 MGP_AJ_G0003722.1 mouse_genomes_project 3 38602889 38604309 - Gm31266 antisense antisense MGP_AJ_T0061863.1 MGP_AJ_G0027391.1 mouse_genomes_project 3 86504592 86512250 + MGP_AJ_P0061863 Dpm3 protein_coding protein_coding MGP_AJ_T0061864.1 MGP_AJ_G0027391.1 mouse_genomes_project 3 86511724 86512250 + MGP_AJ_P0061864 Dpm3 protein_coding protein_coding MGP_AJ_T0061865.1 MGP_AJ_G0027391.1 mouse_genomes_project 3 86511811 86512252 + Dpm3 protein_coding retained_intron MGP_AJ_T0004286.1 MGP_AJ_G0003761.1 mouse_genomes_project 3 87741569 87747312 + Gm16048 antisense antisense MGP_AJ_T0099809.1 MGP_AJ_G0037775.1 mouse_genomes_project 3 14915050 14915177 - Gm23441 snRNA snRNA MGP_AJ_T0014038.1 MGP_AJ_G0012133.1 mouse_genomes_project 3 47224756 47224988 - processed_pseudogene processed_pseudogene MGP_AJ_T0014350.1 MGP_AJ_G0012445.1 mouse_genomes_project 3 138177489 138179129 + processed_pseudogene processed_pseudogene MGP_AJ_T0014279.1 MGP_AJ_G0012374.1 mouse_genomes_project 3 115952322 115952764 - processed_pseudogene processed_pseudogene MGP_AJ_T0001236.1 MGP_AJ_G0001160.1 mouse_genomes_project 3 63219768 63221833 + TEC TEC MGP_AJ_T0001227.1 MGP_AJ_G0001151.1 mouse_genomes_project 3 55764371 55765481 + TEC TEC MGP_AJ_T0061501.1 MGP_AJ_G0027331.1 mouse_genomes_project 3 84888756 84909730 - MGP_AJ_P0061501 Pear1 protein_coding nonsense_mediated_decay MGP_AJ_T0061502.1 MGP_AJ_G0027331.1 mouse_genomes_project 3 84889961 84909735 - MGP_AJ_P0061502 Pear1 protein_coding protein_coding MGP_AJ_T0061503.1 MGP_AJ_G0027331.1 mouse_genomes_project 3 84889961 84964794 - MGP_AJ_P0061503 Pear1 protein_coding protein_coding MGP_AJ_T0061504.1 MGP_AJ_G0027331.1 mouse_genomes_project 3 84889961 84964743 - MGP_AJ_P0061504 Pear1 protein_coding protein_coding MGP_AJ_T0061505.1 MGP_AJ_G0027331.1 mouse_genomes_project 3 84889962 84902983 - Pear1 protein_coding retained_intron MGP_AJ_T0061506.1 MGP_AJ_G0027331.1 mouse_genomes_project 3 84889962 84909725 - MGP_AJ_P0061506 Pear1 protein_coding protein_coding MGP_AJ_T0061507.1 MGP_AJ_G0027331.1 mouse_genomes_project 3 84889962 84909731 - MGP_AJ_P0061507 Pear1 protein_coding nonsense_mediated_decay MGP_AJ_T0061508.1 MGP_AJ_G0027331.1 mouse_genomes_project 3 84889970 84895363 - Pear1 protein_coding retained_intron MGP_AJ_T0061509.1 MGP_AJ_G0027331.1 mouse_genomes_project 3 84890764 84909725 - MGP_AJ_P0061509 Pear1 protein_coding protein_coding MGP_AJ_T0061510.1 MGP_AJ_G0027331.1 mouse_genomes_project 3 84892509 84894992 - MGP_AJ_P0061510 Pear1 protein_coding nonsense_mediated_decay MGP_AJ_T0061511.1 MGP_AJ_G0027331.1 mouse_genomes_project 3 84893490 84897984 - MGP_AJ_P0061511 Pear1 protein_coding nonsense_mediated_decay MGP_AJ_T0061512.1 MGP_AJ_G0027331.1 mouse_genomes_project 3 84897682 84909725 - MGP_AJ_P0061512 Pear1 protein_coding nonsense_mediated_decay MGP_AJ_T0061513.1 MGP_AJ_G0027331.1 mouse_genomes_project 3 84899001 84909737 - Pear1 protein_coding retained_intron MGP_AJ_T0061514.1 MGP_AJ_G0027331.1 mouse_genomes_project 3 84899441 84909725 - MGP_AJ_P0061514 Pear1 protein_coding protein_coding MGP_AJ_T0061515.1 MGP_AJ_G0027331.1 mouse_genomes_project 3 84899454 84909725 - MGP_AJ_P0061515 Pear1 protein_coding nonsense_mediated_decay MGP_AJ_T0061516.1 MGP_AJ_G0027331.1 mouse_genomes_project 3 84899468 84909748 - MGP_AJ_P0061516 Pear1 protein_coding protein_coding MGP_AJ_T0061517.1 MGP_AJ_G0027331.1 mouse_genomes_project 3 84900184 84909717 - MGP_AJ_P0061517 Pear1 protein_coding protein_coding MGP_AJ_T0099831.1 MGP_AJ_G0037797.1 mouse_genomes_project 3 60659273 60659379 + Gm24946 snRNA snRNA MGP_AJ_T0014087.1 MGP_AJ_G0012182.1 mouse_genomes_project 3 63182429 63182853 - processed_pseudogene processed_pseudogene MGP_AJ_T0062169.1 MGP_AJ_G0027468.1 mouse_genomes_project 3 90056824 90058782 - MGP_AJ_P0062169 2310046K23Rik protein_coding protein_coding MGP_AJ_T0010553.1 MGP_AJ_G0008675.1 mouse_genomes_project 3 127752499 127752658 - Gm24515 miRNA miRNA MGP_AJ_T0010557.1 MGP_AJ_G0008679.1 mouse_genomes_project 3 134862500 134862617 - Gm44327 miRNA miRNA MGP_AJ_T0014353.1 MGP_AJ_G0012448.1 mouse_genomes_project 3 138866433 138866974 - processed_pseudogene processed_pseudogene MGP_AJ_T0064489.1 MGP_AJ_G0027965.1 mouse_genomes_project 3 153011612 153291433 - MGP_AJ_P0064489 Tnni3k protein_coding nonsense_mediated_decay MGP_AJ_T0064490.1 MGP_AJ_G0027965.1 mouse_genomes_project 3 153011620 153291433 - MGP_AJ_P0064490 Tnni3k protein_coding protein_coding MGP_AJ_T0064491.1 MGP_AJ_G0027965.1 mouse_genomes_project 3 153266532 153291376 - Tnni3k protein_coding retained_intron MGP_AJ_T0004409.1 MGP_AJ_G0003842.1 mouse_genomes_project 3 152052844 152069079 - Asb17os antisense antisense MGP_AJ_T0004410.1 MGP_AJ_G0003842.1 mouse_genomes_project 3 152067050 152069102 - Asb17os antisense antisense MGP_AJ_T0062398.1 MGP_AJ_G0027536.1 mouse_genomes_project 3 92978959 92983692 - MGP_AJ_P0062398 Gm128 protein_coding protein_coding MGP_AJ_T0062399.1 MGP_AJ_G0027536.1 mouse_genomes_project 3 92979146 92983692 - MGP_AJ_P0062399 Gm128 protein_coding protein_coding MGP_AJ_T0001279.1 MGP_AJ_G0001203.1 mouse_genomes_project 3 102609271 102612253 - TEC TEC MGP_AJ_T0099131.1 MGP_AJ_G0037098.1 mouse_genomes_project 3 62195792 62462726 + sense_overlapping sense_overlapping MGP_AJ_T0011551.1 MGP_AJ_G0009673.1 mouse_genomes_project 3 122866189 122866487 + Gm23673 misc_RNA misc_RNA MGP_AJ_T0004310.1 MGP_AJ_G0003777.1 mouse_genomes_project 3 94604322 94606593 - 4930442L01Rik antisense antisense MGP_AJ_T0098966.1 MGP_AJ_G0036943.1 mouse_genomes_project 3 97012714 97017076 + Gm43024 sense_intronic sense_intronic MGP_AJ_T0014172.1 MGP_AJ_G0012267.1 mouse_genomes_project 3 89849994 89850295 + processed_pseudogene processed_pseudogene MGP_AJ_T0007788.1 MGP_AJ_G0006364.1 mouse_genomes_project 3 152004470 152007253 - 5730460C07Rik lincRNA lincRNA MGP_AJ_T0063094.1 MGP_AJ_G0027696.1 mouse_genomes_project 3 104724135 104774833 + MGP_AJ_P0063094 Lrif1 protein_coding protein_coding MGP_AJ_T0063095.1 MGP_AJ_G0027696.1 mouse_genomes_project 3 104724146 104771127 + Lrif1 protein_coding processed_transcript MGP_AJ_T0063096.1 MGP_AJ_G0027696.1 mouse_genomes_project 3 104760833 104771140 + MGP_AJ_P0063096 Lrif1 protein_coding protein_coding MGP_AJ_T0063097.1 MGP_AJ_G0027696.1 mouse_genomes_project 3 104760998 104773311 + MGP_AJ_P0063097 Lrif1 protein_coding nonsense_mediated_decay MGP_AJ_T0063098.1 MGP_AJ_G0027696.1 mouse_genomes_project 3 104760998 104775506 + MGP_AJ_P0063098 Lrif1 protein_coding protein_coding MGP_AJ_T0063099.1 MGP_AJ_G0027696.1 mouse_genomes_project 3 104761013 104770978 + MGP_AJ_P0063099 Lrif1 protein_coding protein_coding MGP_AJ_T0063100.1 MGP_AJ_G0027696.1 mouse_genomes_project 3 104761030 104773547 + Lrif1 protein_coding retained_intron MGP_AJ_T0063101.1 MGP_AJ_G0027696.1 mouse_genomes_project 3 104761031 104765768 + Lrif1 protein_coding retained_intron MGP_AJ_T0063102.1 MGP_AJ_G0027696.1 mouse_genomes_project 3 104761031 104772516 + Lrif1 protein_coding processed_transcript MGP_AJ_T0063103.1 MGP_AJ_G0027696.1 mouse_genomes_project 3 104761041 104775503 + MGP_AJ_P0063103 Lrif1 protein_coding protein_coding MGP_AJ_T0063104.1 MGP_AJ_G0027696.1 mouse_genomes_project 3 104761072 104770992 + MGP_AJ_P0063104 Lrif1 protein_coding protein_coding MGP_AJ_T0063105.1 MGP_AJ_G0027696.1 mouse_genomes_project 3 104771842 104772756 + Lrif1 protein_coding retained_intron MGP_AJ_T0004288.1 MGP_AJ_G0003763.1 mouse_genomes_project 3 92050634 92059428 - Gm43306 antisense antisense MGP_AJ_T0060996.1 MGP_AJ_G0027205.1 mouse_genomes_project 3 56268649 56271640 - MGP_AJ_P0060996 P2ry13 protein_coding protein_coding MGP_AJ_T0007542.1 MGP_AJ_G0006173.1 mouse_genomes_project 3 48389622 48397900 + Gm5103 lincRNA lincRNA MGP_AJ_T0007543.1 MGP_AJ_G0006173.1 mouse_genomes_project 3 48389674 48397907 + Gm5103 lincRNA lincRNA MGP_AJ_T0099012.1 MGP_AJ_G0036989.1 mouse_genomes_project 3 117836635 117839875 - Gm42664 sense_intronic sense_intronic MGP_AJ_T0060783.1 MGP_AJ_G0027159.1 mouse_genomes_project 3 48531046 48576830 - MGP_AJ_P0060783 Setd7 protein_coding protein_coding MGP_AJ_T0060784.1 MGP_AJ_G0027159.1 mouse_genomes_project 3 48545948 48552514 - Setd7 protein_coding retained_intron MGP_AJ_T0060785.1 MGP_AJ_G0027159.1 mouse_genomes_project 3 48551367 48552995 - Setd7 protein_coding retained_intron MGP_AJ_T0060786.1 MGP_AJ_G0027159.1 mouse_genomes_project 3 48564510 48567149 - Setd7 protein_coding retained_intron MGP_AJ_T0014185.1 MGP_AJ_G0012280.1 mouse_genomes_project 3 92272175 92272369 + processed_pseudogene processed_pseudogene MGP_AJ_T0061160.1 MGP_AJ_G0027248.1 mouse_genomes_project 3 65257454 65837653 + MGP_AJ_P0061160 Schip1 protein_coding protein_coding MGP_AJ_T0061161.1 MGP_AJ_G0027248.1 mouse_genomes_project 3 65257454 65837653 + MGP_AJ_P0061161 Schip1 protein_coding protein_coding MGP_AJ_T0061162.1 MGP_AJ_G0027248.1 mouse_genomes_project 3 65678822 65837670 + MGP_AJ_P0061162 Schip1 protein_coding protein_coding MGP_AJ_T0061163.1 MGP_AJ_G0027248.1 mouse_genomes_project 3 65704194 65829859 + MGP_AJ_P0061163 Schip1 protein_coding protein_coding MGP_AJ_T0061164.1 MGP_AJ_G0027248.1 mouse_genomes_project 3 65704911 65837652 + MGP_AJ_P0061164 Schip1 protein_coding protein_coding MGP_AJ_T0061165.1 MGP_AJ_G0027248.1 mouse_genomes_project 3 65783420 65837653 + MGP_AJ_P0061165 Schip1 protein_coding protein_coding MGP_AJ_T0061166.1 MGP_AJ_G0027248.1 mouse_genomes_project 3 65795423 65837653 + MGP_AJ_P0061166 Schip1 protein_coding protein_coding MGP_AJ_T0061167.1 MGP_AJ_G0027248.1 mouse_genomes_project 3 65807418 65809407 + Schip1 protein_coding retained_intron MGP_AJ_T0010527.1 MGP_AJ_G0008649.1 mouse_genomes_project 3 87279533 87279591 - Mir7669 miRNA miRNA MGP_AJ_T0102007.1 MGP_AJ_G0039818.1 mouse_genomes_project 3 56850314 56912154 + transcribed_unprocessed_pseudogene processed_transcript MGP_AJ_T0001204.1 MGP_AJ_G0001128.1 mouse_genomes_project 3 49023536 49026873 - TEC TEC MGP_AJ_T0062591.1 MGP_AJ_G0027576.1 mouse_genomes_project 3 94034204 94034689 + MGP_AJ_P0062591 Hist2h3c2 protein_coding protein_coding MGP_AJ_T0001385.1 MGP_AJ_G0001308.1 mouse_genomes_project 3 151512060 151515436 - TEC TEC MGP_AJ_T0060385.1 MGP_AJ_G0027092.1 mouse_genomes_project 3 28299655 28314724 + MGP_AJ_P0060385 Cldn11 protein_coding protein_coding MGP_AJ_T0014021.1 MGP_AJ_G0012116.1 mouse_genomes_project 3 41736315 41736703 - processed_pseudogene processed_pseudogene MGP_AJ_T0101164.1 MGP_AJ_G0039130.1 mouse_genomes_project 3 125037482 125037614 + Gm25501 snoRNA snoRNA MGP_AJ_T0064204.1 MGP_AJ_G0027919.1 mouse_genomes_project 3 143698528 143724559 + MGP_AJ_P0064204 Znhit6 protein_coding protein_coding MGP_AJ_T0064205.1 MGP_AJ_G0027919.1 mouse_genomes_project 3 143698555 143725241 + MGP_AJ_P0064205 Znhit6 protein_coding protein_coding MGP_AJ_T0064206.1 MGP_AJ_G0027919.1 mouse_genomes_project 3 143698570 143700854 + MGP_AJ_P0064206 Znhit6 protein_coding protein_coding MGP_AJ_T0064207.1 MGP_AJ_G0027919.1 mouse_genomes_project 3 143698581 143715971 + MGP_AJ_P0064207 Znhit6 protein_coding protein_coding MGP_AJ_T0064208.1 MGP_AJ_G0027919.1 mouse_genomes_project 3 143698597 143704960 + MGP_AJ_P0064208 Znhit6 protein_coding nonsense_mediated_decay MGP_AJ_T0064209.1 MGP_AJ_G0027919.1 mouse_genomes_project 3 143698659 143714190 + MGP_AJ_P0064209 Znhit6 protein_coding protein_coding MGP_AJ_T0064210.1 MGP_AJ_G0027919.1 mouse_genomes_project 3 143717173 143724458 + Znhit6 protein_coding retained_intron MGP_AJ_T0064498.1 MGP_AJ_G0027967.1 mouse_genomes_project 3 153329338 153338532 + Lrriq3 protein_coding retained_intron MGP_AJ_T0064499.1 MGP_AJ_G0027967.1 mouse_genomes_project 3 153329338 153434552 + MGP_AJ_P0064499 Lrriq3 protein_coding protein_coding MGP_AJ_T0064500.1 MGP_AJ_G0027967.1 mouse_genomes_project 3 153329442 153422480 + MGP_AJ_P0064500 Lrriq3 protein_coding protein_coding MGP_AJ_T0064501.1 MGP_AJ_G0027967.1 mouse_genomes_project 3 153329492 153373614 + MGP_AJ_P0064501 Lrriq3 protein_coding protein_coding MGP_AJ_T0060664.1 MGP_AJ_G0027142.1 mouse_genomes_project 3 37870401 37983779 + MGP_AJ_P0060664 protein_coding protein_coding MGP_AJ_T0060665.1 MGP_AJ_G0027142.1 mouse_genomes_project 3 37924980 37985608 + MGP_AJ_P0060665 protein_coding protein_coding MGP_AJ_T0060666.1 MGP_AJ_G0027142.1 mouse_genomes_project 3 37925098 37955554 + MGP_AJ_P0060666 protein_coding protein_coding MGP_AJ_T0060667.1 MGP_AJ_G0027142.1 mouse_genomes_project 3 37925112 37985606 + MGP_AJ_P0060667 protein_coding nonsense_mediated_decay MGP_AJ_T0060668.1 MGP_AJ_G0027142.1 mouse_genomes_project 3 37925124 37955523 + MGP_AJ_P0060668 protein_coding nonsense_mediated_decay MGP_AJ_T0060669.1 MGP_AJ_G0027142.1 mouse_genomes_project 3 37925141 37967089 + MGP_AJ_P0060669 protein_coding protein_coding MGP_AJ_T0060670.1 MGP_AJ_G0027142.1 mouse_genomes_project 3 37925157 37984609 + MGP_AJ_P0060670 protein_coding protein_coding MGP_AJ_T0060671.1 MGP_AJ_G0027142.1 mouse_genomes_project 3 37925159 37984626 + MGP_AJ_P0060671 protein_coding nonsense_mediated_decay MGP_AJ_T0060672.1 MGP_AJ_G0027142.1 mouse_genomes_project 3 37925180 37955879 + MGP_AJ_P0060672 protein_coding protein_coding MGP_AJ_T0060674.1 MGP_AJ_G0027142.1 mouse_genomes_project 3 37950777 37964669 + protein_coding retained_intron MGP_AJ_T0060675.1 MGP_AJ_G0027142.1 mouse_genomes_project 3 37978014 37984167 + protein_coding processed_transcript MGP_AJ_T0101148.1 MGP_AJ_G0039114.1 mouse_genomes_project 3 96980829 96980958 - Gm22341 snoRNA snoRNA MGP_AJ_T0001300.1 MGP_AJ_G0001224.1 mouse_genomes_project 3 117820385 117822425 - TEC TEC MGP_AJ_T0007790.1 MGP_AJ_G0006366.1 mouse_genomes_project 3 154287780 154293436 - Gm42947 lincRNA lincRNA MGP_AJ_T0004260.1 MGP_AJ_G0003743.1 mouse_genomes_project 3 76322531 76365326 + 4921511C10Rik antisense antisense MGP_AJ_T0101168.1 MGP_AJ_G0039134.1 mouse_genomes_project 3 131584710 131584842 - Gm23011 snoRNA snoRNA MGP_AJ_T0061866.1 MGP_AJ_G0027392.1 mouse_genomes_project 3 86513418 86515696 - Slc50a1 protein_coding retained_intron MGP_AJ_T0061867.1 MGP_AJ_G0027392.1 mouse_genomes_project 3 86513418 86515699 - Slc50a1 protein_coding retained_intron MGP_AJ_T0061868.1 MGP_AJ_G0027392.1 mouse_genomes_project 3 86513418 86515668 - MGP_AJ_P0061868 Slc50a1 protein_coding protein_coding MGP_AJ_T0061869.1 MGP_AJ_G0027392.1 mouse_genomes_project 3 86513418 86515743 - MGP_AJ_P0061869 Slc50a1 protein_coding protein_coding MGP_AJ_T0061870.1 MGP_AJ_G0027392.1 mouse_genomes_project 3 86513418 86515652 - MGP_AJ_P0061870 Slc50a1 protein_coding nonsense_mediated_decay MGP_AJ_T0061871.1 MGP_AJ_G0027392.1 mouse_genomes_project 3 86513420 86515698 - Slc50a1 protein_coding retained_intron MGP_AJ_T0061872.1 MGP_AJ_G0027392.1 mouse_genomes_project 3 86513420 86515742 - Slc50a1 protein_coding retained_intron MGP_AJ_T0061873.1 MGP_AJ_G0027392.1 mouse_genomes_project 3 86514243 86515743 - MGP_AJ_P0061873 Slc50a1 protein_coding protein_coding MGP_AJ_T0061874.1 MGP_AJ_G0027392.1 mouse_genomes_project 3 86514317 86515400 - Slc50a1 protein_coding processed_transcript MGP_AJ_T0062846.1 MGP_AJ_G0027645.1 mouse_genomes_project 3 100865650 100890131 - MGP_AJ_P0062846 Nr1h5 protein_coding protein_coding MGP_AJ_T0062847.1 MGP_AJ_G0027645.1 mouse_genomes_project 3 100866862 100884369 - MGP_AJ_P0062847 Nr1h5 protein_coding protein_coding MGP_AJ_T0062848.1 MGP_AJ_G0027645.1 mouse_genomes_project 3 100866862 100884369 - MGP_AJ_P0062848 Nr1h5 protein_coding nonsense_mediated_decay MGP_AJ_T0062849.1 MGP_AJ_G0027645.1 mouse_genomes_project 3 100866862 100884369 - MGP_AJ_P0062849 Nr1h5 protein_coding protein_coding MGP_AJ_T0062850.1 MGP_AJ_G0027645.1 mouse_genomes_project 3 100866862 100884369 - MGP_AJ_P0062850 Nr1h5 protein_coding nonsense_mediated_decay MGP_AJ_T0061465.1 MGP_AJ_G0027322.1 mouse_genomes_project 3 84103149 84105529 - MGP_AJ_P0061465 protein_coding protein_coding MGP_AJ_T0099892.1 MGP_AJ_G0037858.1 mouse_genomes_project 3 158152225 158152332 - Gm23941 snRNA snRNA MGP_AJ_T0007708.1 MGP_AJ_G0006299.1 mouse_genomes_project 3 128903357 128907669 - lincRNA lincRNA MGP_AJ_T0099849.1 MGP_AJ_G0037815.1 mouse_genomes_project 3 86441025 86441132 - Gm23269 snRNA snRNA MGP_AJ_T0061142.1 MGP_AJ_G0027240.1 mouse_genomes_project 3 64567534 64578521 - MGP_AJ_P0061142 protein_coding protein_coding MGP_AJ_T0060267.1 MGP_AJ_G0027073.1 mouse_genomes_project 3 25006553 25036915 - MGP_AJ_P0060267 Tmem212 protein_coding protein_coding MGP_AJ_T0060394.1 MGP_AJ_G0027096.1 mouse_genomes_project 3 29613446 29647323 + MGP_AJ_P0060394 Pik3ca protein_coding protein_coding MGP_AJ_T0060395.1 MGP_AJ_G0027096.1 mouse_genomes_project 3 29642173 29643325 + Pik3ca protein_coding retained_intron MGP_AJ_T0004209.1 MGP_AJ_G0003705.1 mouse_genomes_project 3 27144175 27179032 + Mecomos antisense antisense MGP_AJ_T0004210.1 MGP_AJ_G0003705.1 mouse_genomes_project 3 27149425 27155112 + Mecomos antisense antisense MGP_AJ_T0060070.1 MGP_AJ_G0027021.1 mouse_genomes_project 3 6530729 6712453 - MGP_AJ_P0060070 Zfp704 protein_coding protein_coding MGP_AJ_T0060071.1 MGP_AJ_G0027021.1 mouse_genomes_project 3 6542041 6667536 - MGP_AJ_P0060071 Zfp704 protein_coding protein_coding MGP_AJ_T0060072.1 MGP_AJ_G0027021.1 mouse_genomes_project 3 6542449 6544790 - Zfp704 protein_coding retained_intron MGP_AJ_T0063457.1 MGP_AJ_G0027778.1 mouse_genomes_project 3 114972850 115023511 - MGP_AJ_P0063457 Palmd protein_coding protein_coding MGP_AJ_T0063458.1 MGP_AJ_G0027778.1 mouse_genomes_project 3 114976215 115023382 - MGP_AJ_P0063458 Palmd protein_coding protein_coding MGP_AJ_T0063459.1 MGP_AJ_G0027778.1 mouse_genomes_project 3 114981624 115023510 - MGP_AJ_P0063459 Palmd protein_coding protein_coding MGP_AJ_T0063460.1 MGP_AJ_G0027778.1 mouse_genomes_project 3 115019568 115023267 - Palmd protein_coding retained_intron MGP_AJ_T0007493.1 MGP_AJ_G0006136.1 mouse_genomes_project 3 27680807 27682193 - lincRNA lincRNA MGP_AJ_T0064322.1 MGP_AJ_G0027942.1 mouse_genomes_project 3 149901348 149922809 - MGP_AJ_P0064322 Ifi44 protein_coding protein_coding MGP_AJ_T0064323.1 MGP_AJ_G0027942.1 mouse_genomes_project 3 149902852 149922731 - Ifi44 protein_coding processed_transcript MGP_AJ_T0064324.1 MGP_AJ_G0027942.1 mouse_genomes_project 3 149918539 149922796 - Ifi44 protein_coding retained_intron MGP_AJ_T0064325.1 MGP_AJ_G0027942.1 mouse_genomes_project 3 149918640 149922752 - Ifi44 protein_coding processed_transcript MGP_AJ_T0098664.1 MGP_AJ_G0036648.1 mouse_genomes_project 3 1449968 1450083 + n-R5s194 rRNA rRNA MGP_AJ_T0063119.1 MGP_AJ_G0027705.1 mouse_genomes_project 3 105314482 105319704 + MGP_AJ_P0063119 Lamtor5 protein_coding protein_coding MGP_AJ_T0063120.1 MGP_AJ_G0027705.1 mouse_genomes_project 3 105314623 105319707 + MGP_AJ_P0063120 Lamtor5 protein_coding protein_coding MGP_AJ_T0004302.1 MGP_AJ_G0003771.1 mouse_genomes_project 3 93934412 93939363 - Gm17690 antisense antisense MGP_AJ_T0004303.1 MGP_AJ_G0003771.1 mouse_genomes_project 3 93938323 93939365 - Gm17690 antisense antisense MGP_AJ_T0062168.1 MGP_AJ_G0027467.1 mouse_genomes_project 3 90024843 90025074 - MGP_AJ_P0062168 Sprr4 protein_coding protein_coding MGP_AJ_T0014332.1 MGP_AJ_G0012427.1 mouse_genomes_project 3 133946217 133946764 - processed_pseudogene processed_pseudogene MGP_AJ_T0063013.1 MGP_AJ_G0027675.1 mouse_genomes_project 3 102941213 102990557 - MGP_AJ_P0063013 Cttnbp2nl protein_coding protein_coding MGP_AJ_T0063014.1 MGP_AJ_G0027675.1 mouse_genomes_project 3 102941215 102990362 - MGP_AJ_P0063014 Cttnbp2nl protein_coding protein_coding MGP_AJ_T0063015.1 MGP_AJ_G0027675.1 mouse_genomes_project 3 102945363 102990365 - MGP_AJ_P0063015 Cttnbp2nl protein_coding protein_coding MGP_AJ_T0063016.1 MGP_AJ_G0027675.1 mouse_genomes_project 3 102945393 102990336 - Cttnbp2nl protein_coding retained_intron MGP_AJ_T0102576.1 MGP_AJ_G0040318.1 mouse_genomes_project 3 155061566 155062041 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0007539.1 MGP_AJ_G0006170.1 mouse_genomes_project 3 45808487 45820906 - Gm37190 lincRNA lincRNA MGP_AJ_T0060262.1 MGP_AJ_G0027071.1 mouse_genomes_project 3 24506736 24513398 + MGP_AJ_P0060262 Ghsr protein_coding protein_coding MGP_AJ_T0014123.1 MGP_AJ_G0012218.1 mouse_genomes_project 3 71421579 71421916 - processed_pseudogene processed_pseudogene MGP_AJ_T0014304.1 MGP_AJ_G0012399.1 mouse_genomes_project 3 125742076 125742665 - processed_pseudogene processed_pseudogene MGP_AJ_T0063108.1 MGP_AJ_G0027699.1 mouse_genomes_project 3 105065050 105066952 + MGP_AJ_P0063108 Kcna3 protein_coding protein_coding MGP_AJ_T0001173.1 MGP_AJ_G0001099.1 mouse_genomes_project 3 42469999 42473138 + TEC TEC MGP_AJ_T0001401.1 MGP_AJ_G0001324.1 mouse_genomes_project 3 156457679 156459369 + TEC TEC MGP_AJ_T0101137.1 MGP_AJ_G0039103.1 mouse_genomes_project 3 83263423 83263494 - Rnu73b snoRNA snoRNA MGP_AJ_T0098976.1 MGP_AJ_G0036953.1 mouse_genomes_project 3 99509670 99510422 - Gm42937 sense_intronic sense_intronic MGP_AJ_T0062644.1 MGP_AJ_G0027593.1 mouse_genomes_project 3 94480729 94498843 - MGP_AJ_P0062644 Polr3c protein_coding protein_coding MGP_AJ_T0062645.1 MGP_AJ_G0027593.1 mouse_genomes_project 3 94480762 94498656 - MGP_AJ_P0062645 Polr3c protein_coding protein_coding MGP_AJ_T0062646.1 MGP_AJ_G0027593.1 mouse_genomes_project 3 94485691 94494827 - MGP_AJ_P0062646 Polr3c protein_coding nonsense_mediated_decay MGP_AJ_T0062647.1 MGP_AJ_G0027593.1 mouse_genomes_project 3 94489729 94498691 - Polr3c protein_coding retained_intron MGP_AJ_T0062648.1 MGP_AJ_G0027593.1 mouse_genomes_project 3 94494427 94498669 - MGP_AJ_P0062648 Polr3c protein_coding protein_coding MGP_AJ_T0062649.1 MGP_AJ_G0027593.1 mouse_genomes_project 3 94494430 94498690 - MGP_AJ_P0062649 Polr3c protein_coding protein_coding MGP_AJ_T0061041.1 MGP_AJ_G0027217.1 mouse_genomes_project 3 58552771 58556473 - MGP_AJ_P0061041 B430305J03Rik protein_coding protein_coding MGP_AJ_T0004289.1 MGP_AJ_G0003764.1 mouse_genomes_project 3 92076246 92086343 - Gm43401 antisense antisense MGP_AJ_T0102009.1 MGP_AJ_G0039820.1 mouse_genomes_project 3 61295943 61322847 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_AJ_T0099867.1 MGP_AJ_G0037833.1 mouse_genomes_project 3 106562807 106562930 + Gm23336 snRNA snRNA MGP_AJ_T0060172.1 MGP_AJ_G0027054.1 mouse_genomes_project 3 16731477 16749689 - MGP_AJ_P0060172 1700064H15Rik protein_coding protein_coding MGP_AJ_T0014090.1 MGP_AJ_G0012185.1 mouse_genomes_project 3 63281136 63283247 - processed_pseudogene processed_pseudogene MGP_AJ_T0014385.1 MGP_AJ_G0012480.1 mouse_genomes_project 3 157207728 157208725 + processed_pseudogene processed_pseudogene MGP_AJ_T0102575.1 MGP_AJ_G0040317.1 mouse_genomes_project 3 153748833 153749704 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0004275.1 MGP_AJ_G0003753.1 mouse_genomes_project 3 85857115 85858483 - Gm43714 antisense antisense MGP_AJ_T0064211.1 MGP_AJ_G0027920.1 mouse_genomes_project 3 143769532 143772193 - MGP_AJ_P0064211 Cyr61 protein_coding protein_coding MGP_AJ_T0061007.1 MGP_AJ_G0027208.1 mouse_genomes_project 3 56792485 56823584 + MGP_AJ_P0061007 Gm5538 protein_coding protein_coding MGP_AJ_T0062755.1 MGP_AJ_G0027622.1 mouse_genomes_project 3 97110256 97183919 + MGP_AJ_P0062755 Tbx15 protein_coding protein_coding MGP_AJ_T0062756.1 MGP_AJ_G0027622.1 mouse_genomes_project 3 97123801 97225210 + MGP_AJ_P0062756 Tbx15 protein_coding protein_coding MGP_AJ_T0062757.1 MGP_AJ_G0027622.1 mouse_genomes_project 3 97167218 97187034 + MGP_AJ_P0062757 Tbx15 protein_coding protein_coding MGP_AJ_T0061175.1 MGP_AJ_G0027251.1 mouse_genomes_project 3 66061125 66063703 + MGP_AJ_P0061175 1110032F04Rik protein_coding protein_coding MGP_AJ_T0064155.1 MGP_AJ_G0027908.1 mouse_genomes_project 3 142636165 142663592 + protein_coding processed_transcript MGP_AJ_T0064156.1 MGP_AJ_G0027908.1 mouse_genomes_project 3 142636287 142664015 + MGP_AJ_P0064156 protein_coding protein_coding MGP_AJ_T0064157.1 MGP_AJ_G0027908.1 mouse_genomes_project 3 142636554 142663996 + MGP_AJ_P0064157 protein_coding protein_coding MGP_AJ_T0064158.1 MGP_AJ_G0027908.1 mouse_genomes_project 3 142636575 142639274 + protein_coding retained_intron MGP_AJ_T0064159.1 MGP_AJ_G0027908.1 mouse_genomes_project 3 142643513 142661767 + MGP_AJ_P0064159 protein_coding protein_coding MGP_AJ_T0064160.1 MGP_AJ_G0027908.1 mouse_genomes_project 3 142656759 142657925 + protein_coding retained_intron MGP_AJ_T0063775.1 MGP_AJ_G0027833.1 mouse_genomes_project 3 127905465 127922010 + MGP_AJ_P0063775 Cfi protein_coding protein_coding MGP_AJ_T0063776.1 MGP_AJ_G0027833.1 mouse_genomes_project 3 127906703 127946444 + MGP_AJ_P0063776 Cfi protein_coding protein_coding MGP_AJ_T0062366.1 MGP_AJ_G0027532.1 mouse_genomes_project 3 92901846 92905922 + Sema6c protein_coding processed_transcript MGP_AJ_T0062367.1 MGP_AJ_G0027532.1 mouse_genomes_project 3 92901883 92905807 + Sema6c protein_coding processed_transcript MGP_AJ_T0062368.1 MGP_AJ_G0027532.1 mouse_genomes_project 3 92901883 92915046 + MGP_AJ_P0062368 Sema6c protein_coding nonsense_mediated_decay MGP_AJ_T0062369.1 MGP_AJ_G0027532.1 mouse_genomes_project 3 92901883 92909723 + MGP_AJ_P0062369 Sema6c protein_coding nonsense_mediated_decay MGP_AJ_T0062370.1 MGP_AJ_G0027532.1 mouse_genomes_project 3 92901890 92905861 + MGP_AJ_P0062370 Sema6c protein_coding protein_coding MGP_AJ_T0062371.1 MGP_AJ_G0027532.1 mouse_genomes_project 3 92901894 92915417 + Sema6c protein_coding retained_intron MGP_AJ_T0062372.1 MGP_AJ_G0027532.1 mouse_genomes_project 3 92901894 92915417 + MGP_AJ_P0062372 Sema6c protein_coding nonsense_mediated_decay MGP_AJ_T0062373.1 MGP_AJ_G0027532.1 mouse_genomes_project 3 92901894 92915417 + MGP_AJ_P0062373 Sema6c protein_coding protein_coding MGP_AJ_T0062374.1 MGP_AJ_G0027532.1 mouse_genomes_project 3 92901894 92915417 + MGP_AJ_P0062374 Sema6c protein_coding protein_coding MGP_AJ_T0062375.1 MGP_AJ_G0027532.1 mouse_genomes_project 3 92905685 92915417 + MGP_AJ_P0062375 Sema6c protein_coding protein_coding MGP_AJ_T0062376.1 MGP_AJ_G0027532.1 mouse_genomes_project 3 92905685 92915255 + MGP_AJ_P0062376 Sema6c protein_coding protein_coding MGP_AJ_T0062377.1 MGP_AJ_G0027532.1 mouse_genomes_project 3 92905753 92914709 + MGP_AJ_P0062377 Sema6c protein_coding protein_coding MGP_AJ_T0062378.1 MGP_AJ_G0027532.1 mouse_genomes_project 3 92909588 92911533 + Sema6c protein_coding processed_transcript MGP_AJ_T0062379.1 MGP_AJ_G0027532.1 mouse_genomes_project 3 92911715 92913288 + Sema6c protein_coding retained_intron MGP_AJ_T0062380.1 MGP_AJ_G0027532.1 mouse_genomes_project 3 92912197 92913369 + Sema6c protein_coding retained_intron MGP_AJ_T0064129.1 MGP_AJ_G0027904.1 mouse_genomes_project 3 140807467 140825879 + MGP_AJ_P0064129 Gtf2b protein_coding protein_coding MGP_AJ_T0064130.1 MGP_AJ_G0027904.1 mouse_genomes_project 3 140807645 140810837 + Gtf2b protein_coding retained_intron MGP_AJ_T0004238.1 MGP_AJ_G0003726.1 mouse_genomes_project 3 49294724 49295725 - Gm20402 antisense antisense MGP_AJ_T0063067.1 MGP_AJ_G0027690.1 mouse_genomes_project 3 104112355 104210848 - MGP_AJ_P0063067 Chil3 protein_coding protein_coding MGP_AJ_T0063068.1 MGP_AJ_G0027690.1 mouse_genomes_project 3 104113398 104114563 - MGP_AJ_P0063068 Chil3 protein_coding protein_coding MGP_AJ_T0007755.1 MGP_AJ_G0006341.1 mouse_genomes_project 3 141937955 142015619 - Gm42707 lincRNA lincRNA MGP_AJ_T0007757.1 MGP_AJ_G0006341.1 mouse_genomes_project 3 141969849 142015243 - Gm42707 lincRNA lincRNA MGP_AJ_T0010517.1 MGP_AJ_G0008639.1 mouse_genomes_project 3 70329690 70329800 + Gm24544 miRNA miRNA MGP_AJ_T0060631.1 MGP_AJ_G0027135.1 mouse_genomes_project 3 35595095 35630733 - MGP_AJ_P0060631 protein_coding protein_coding MGP_AJ_T0060632.1 MGP_AJ_G0027135.1 mouse_genomes_project 3 35595488 35628982 - MGP_AJ_P0060632 protein_coding protein_coding MGP_AJ_T0060633.1 MGP_AJ_G0027135.1 mouse_genomes_project 3 35597918 35601394 - MGP_AJ_P0060633 protein_coding protein_coding MGP_AJ_T0060634.1 MGP_AJ_G0027135.1 mouse_genomes_project 3 35629141 35630704 - protein_coding processed_transcript MGP_AJ_T0014234.1 MGP_AJ_G0012329.1 mouse_genomes_project 3 103915000 103922580 + processed_pseudogene processed_pseudogene MGP_AJ_T0063064.1 MGP_AJ_G0027689.1 mouse_genomes_project 3 104075929 104096149 + MGP_AJ_P0063064 Chia1 protein_coding protein_coding MGP_AJ_T0063065.1 MGP_AJ_G0027689.1 mouse_genomes_project 3 104076090 104092743 + MGP_AJ_P0063065 Chia1 protein_coding protein_coding MGP_AJ_T0063066.1 MGP_AJ_G0027689.1 mouse_genomes_project 3 104086265 104092359 + Chia1 protein_coding retained_intron MGP_AJ_T0001144.1 MGP_AJ_G0001070.1 mouse_genomes_project 3 31793681 31796553 + TEC TEC MGP_AJ_T0004355.1 MGP_AJ_G0003802.1 mouse_genomes_project 3 114657926 114659755 - Gm42893 antisense antisense MGP_AJ_T0007452.1 MGP_AJ_G0006108.1 mouse_genomes_project 3 5820126 5823457 - C230057A21Rik lincRNA lincRNA MGP_AJ_T0007453.1 MGP_AJ_G0006108.1 mouse_genomes_project 3 5820321 5823617 - C230057A21Rik lincRNA lincRNA MGP_AJ_T0014138.1 MGP_AJ_G0012233.1 mouse_genomes_project 3 75969897 75970563 - processed_pseudogene processed_pseudogene MGP_AJ_T0007633.1 MGP_AJ_G0006240.1 mouse_genomes_project 3 94103341 94118007 + lincRNA lincRNA MGP_AJ_T0061280.1 MGP_AJ_G0027275.1 mouse_genomes_project 3 76706460 76718389 + Ppid protein_coding retained_intron MGP_AJ_T0061281.1 MGP_AJ_G0027275.1 mouse_genomes_project 3 76706483 76718763 + MGP_AJ_P0061281 Ppid protein_coding protein_coding MGP_AJ_T0061282.1 MGP_AJ_G0027275.1 mouse_genomes_project 3 76706606 76710426 + Ppid protein_coding processed_transcript MGP_AJ_T0061283.1 MGP_AJ_G0027275.1 mouse_genomes_project 3 76708807 76712879 + MGP_AJ_P0061283 Ppid protein_coding nonsense_mediated_decay MGP_AJ_T0061284.1 MGP_AJ_G0027275.1 mouse_genomes_project 3 76711274 76713306 + Ppid protein_coding retained_intron MGP_AJ_T0061285.1 MGP_AJ_G0027275.1 mouse_genomes_project 3 76713826 76717441 + Ppid protein_coding retained_intron MGP_AJ_T0014275.1 MGP_AJ_G0012370.1 mouse_genomes_project 3 115052914 115053644 - processed_pseudogene processed_pseudogene MGP_AJ_T0014045.1 MGP_AJ_G0012140.1 mouse_genomes_project 3 49262942 49263693 - processed_pseudogene processed_pseudogene MGP_AJ_T0007624.1 MGP_AJ_G0006231.1 mouse_genomes_project 3 90369897 90370284 - Gm38201 lincRNA lincRNA MGP_AJ_T0001283.1 MGP_AJ_G0001207.1 mouse_genomes_project 3 104764704 104769205 + TEC TEC MGP_AJ_T0062833.1 MGP_AJ_G0027642.1 mouse_genomes_project 3 100664109 100701560 + MGP_AJ_P0062833 Tspan2 protein_coding protein_coding MGP_AJ_T0062834.1 MGP_AJ_G0027642.1 mouse_genomes_project 3 100664327 100698528 + MGP_AJ_P0062834 Tspan2 protein_coding protein_coding MGP_AJ_T0062835.1 MGP_AJ_G0027642.1 mouse_genomes_project 3 100688582 100746541 + MGP_AJ_P0062835 Tspan2 protein_coding protein_coding MGP_AJ_T0099016.1 MGP_AJ_G0036993.1 mouse_genomes_project 3 142589792 142590565 - Gm43560 sense_intronic sense_intronic MGP_AJ_T0061736.1 MGP_AJ_G0027372.1 mouse_genomes_project 3 85917181 85925112 - MGP_AJ_P0061736 Syt11 protein_coding protein_coding MGP_AJ_T0061737.1 MGP_AJ_G0027372.1 mouse_genomes_project 3 85917181 86075105 - MGP_AJ_P0061737 Syt11 protein_coding protein_coding MGP_AJ_T0061738.1 MGP_AJ_G0027372.1 mouse_genomes_project 3 85917182 86071440 - MGP_AJ_P0061738 Syt11 protein_coding protein_coding MGP_AJ_T0061739.1 MGP_AJ_G0027372.1 mouse_genomes_project 3 85920537 85936324 - MGP_AJ_P0061739 Syt11 protein_coding protein_coding MGP_AJ_T0061742.1 MGP_AJ_G0027372.1 mouse_genomes_project 3 86071554 86075093 - Syt11 protein_coding processed_transcript MGP_AJ_T0062147.1 MGP_AJ_G0027449.1 mouse_genomes_project 3 89550777 89553649 - MGP_AJ_P0062147 Lor protein_coding protein_coding MGP_AJ_T0013908.1 MGP_AJ_G0012003.1 mouse_genomes_project 3 5555760 5556568 - processed_pseudogene processed_pseudogene MGP_AJ_T0062749.1 MGP_AJ_G0027620.1 mouse_genomes_project 3 96750636 96771376 - MGP_AJ_P0062749 Hao2 protein_coding protein_coding MGP_AJ_T0101138.1 MGP_AJ_G0039104.1 mouse_genomes_project 3 83398961 83399092 - Gm26343 snoRNA snoRNA MGP_AJ_T0014181.1 MGP_AJ_G0012276.1 mouse_genomes_project 3 91000099 91000882 - processed_pseudogene processed_pseudogene MGP_AJ_T0064381.1 MGP_AJ_G0027949.1 mouse_genomes_project 3 150468062 150528322 - MGP_AJ_P0064381 Fam73a protein_coding protein_coding MGP_AJ_T0064382.1 MGP_AJ_G0027949.1 mouse_genomes_project 3 150470144 150528320 - MGP_AJ_P0064382 Fam73a protein_coding protein_coding MGP_AJ_T0064383.1 MGP_AJ_G0027949.1 mouse_genomes_project 3 150476746 150528298 - MGP_AJ_P0064383 Fam73a protein_coding protein_coding MGP_AJ_T0064384.1 MGP_AJ_G0027949.1 mouse_genomes_project 3 150476913 150480795 - Fam73a protein_coding retained_intron MGP_AJ_T0064385.1 MGP_AJ_G0027949.1 mouse_genomes_project 3 150485791 150514332 - MGP_AJ_P0064385 Fam73a protein_coding protein_coding MGP_AJ_T0064386.1 MGP_AJ_G0027949.1 mouse_genomes_project 3 150485965 150494217 - Fam73a protein_coding retained_intron MGP_AJ_T0064387.1 MGP_AJ_G0027949.1 mouse_genomes_project 3 150493759 150525814 - MGP_AJ_P0064387 Fam73a protein_coding nonsense_mediated_decay MGP_AJ_T0064388.1 MGP_AJ_G0027949.1 mouse_genomes_project 3 150525360 150528299 - Fam73a protein_coding retained_intron MGP_AJ_T0063124.1 MGP_AJ_G0027707.1 mouse_genomes_project 3 105361086 105369352 - MGP_AJ_P0063124 Rbm15 protein_coding protein_coding MGP_AJ_T0063125.1 MGP_AJ_G0027707.1 mouse_genomes_project 3 105362804 105368780 - Rbm15 protein_coding retained_intron MGP_AJ_T0060817.1 MGP_AJ_G0027167.1 mouse_genomes_project 3 50513946 50526863 + Stoml3 protein_coding retained_intron MGP_AJ_T0060818.1 MGP_AJ_G0027167.1 mouse_genomes_project 3 50514020 50536919 + MGP_AJ_P0060818 Stoml3 protein_coding protein_coding MGP_AJ_T0062046.1 MGP_AJ_G0027423.1 mouse_genomes_project 3 87538144 87548107 + MGP_AJ_P0062046 Crtc2 protein_coding protein_coding MGP_AJ_T0062047.1 MGP_AJ_G0027423.1 mouse_genomes_project 3 87538277 87548102 + Crtc2 protein_coding retained_intron MGP_AJ_T0062048.1 MGP_AJ_G0027423.1 mouse_genomes_project 3 87538277 87548102 + Crtc2 protein_coding retained_intron MGP_AJ_T0062049.1 MGP_AJ_G0027423.1 mouse_genomes_project 3 87538305 87542615 + Crtc2 protein_coding retained_intron MGP_AJ_T0062050.1 MGP_AJ_G0027423.1 mouse_genomes_project 3 87538322 87548102 + Crtc2 protein_coding processed_transcript MGP_AJ_T0062051.1 MGP_AJ_G0027423.1 mouse_genomes_project 3 87541276 87548102 + MGP_AJ_P0062051 Crtc2 protein_coding nonsense_mediated_decay MGP_AJ_T0062052.1 MGP_AJ_G0027423.1 mouse_genomes_project 3 87542032 87543474 + Crtc2 protein_coding retained_intron MGP_AJ_T0062053.1 MGP_AJ_G0027423.1 mouse_genomes_project 3 87542946 87544303 + Crtc2 protein_coding retained_intron MGP_AJ_T0063644.1 MGP_AJ_G0027815.1 mouse_genomes_project 3 123884279 123952995 - MGP_AJ_P0063644 Ugt8a protein_coding protein_coding MGP_AJ_T0063645.1 MGP_AJ_G0027815.1 mouse_genomes_project 3 123884514 123928071 - MGP_AJ_P0063645 Ugt8a protein_coding protein_coding MGP_AJ_T0063646.1 MGP_AJ_G0027815.1 mouse_genomes_project 3 123926451 123952927 - Ugt8a protein_coding retained_intron MGP_AJ_T0014162.1 MGP_AJ_G0012257.1 mouse_genomes_project 3 86355917 86356170 + processed_pseudogene processed_pseudogene MGP_AJ_T0102533.1 MGP_AJ_G0040275.1 mouse_genomes_project 3 61295943 61322847 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0063285.1 MGP_AJ_G0027745.1 mouse_genomes_project 3 106812645 106856078 + MGP_AJ_P0063285 Aknad1 protein_coding protein_coding MGP_AJ_T0063286.1 MGP_AJ_G0027745.1 mouse_genomes_project 3 106817260 106848375 + MGP_AJ_P0063286 Aknad1 protein_coding nonsense_mediated_decay MGP_AJ_T0063287.1 MGP_AJ_G0027745.1 mouse_genomes_project 3 106825413 106834991 + Aknad1 protein_coding retained_intron MGP_AJ_T0063288.1 MGP_AJ_G0027745.1 mouse_genomes_project 3 106833108 106848080 + Aknad1 protein_coding retained_intron MGP_AJ_T0061660.1 MGP_AJ_G0027362.1 mouse_genomes_project 3 85654394 85658854 - Lmna protein_coding retained_intron MGP_AJ_T0061661.1 MGP_AJ_G0027362.1 mouse_genomes_project 3 85655395 85677459 - MGP_AJ_P0061661 Lmna protein_coding protein_coding MGP_AJ_T0061662.1 MGP_AJ_G0027362.1 mouse_genomes_project 3 85656093 85677461 - Lmna protein_coding processed_transcript MGP_AJ_T0061663.1 MGP_AJ_G0027362.1 mouse_genomes_project 3 85656323 85657111 - Lmna protein_coding retained_intron MGP_AJ_T0061664.1 MGP_AJ_G0027362.1 mouse_genomes_project 3 85657451 85677431 - MGP_AJ_P0061664 Lmna protein_coding protein_coding MGP_AJ_T0061665.1 MGP_AJ_G0027362.1 mouse_genomes_project 3 85657452 85667435 - MGP_AJ_P0061665 Lmna protein_coding protein_coding MGP_AJ_T0061666.1 MGP_AJ_G0027362.1 mouse_genomes_project 3 85676876 85684009 - MGP_AJ_P0061666 Lmna protein_coding protein_coding MGP_AJ_T0004233.1 MGP_AJ_G0003721.1 mouse_genomes_project 3 36142328 36143410 - Gm43539 antisense antisense MGP_AJ_T0004363.1 MGP_AJ_G0003808.1 mouse_genomes_project 3 120964951 121028360 - 4933405D12Rik antisense antisense MGP_AJ_T0004364.1 MGP_AJ_G0003808.1 mouse_genomes_project 3 120983772 121028360 - 4933405D12Rik antisense antisense MGP_AJ_T0060378.1 MGP_AJ_G0027091.1 mouse_genomes_project 3 28243486 28271343 + MGP_AJ_P0060378 Skil protein_coding protein_coding MGP_AJ_T0060379.1 MGP_AJ_G0027091.1 mouse_genomes_project 3 28243489 28249823 + Skil protein_coding retained_intron MGP_AJ_T0060380.1 MGP_AJ_G0027091.1 mouse_genomes_project 3 28243489 28271347 + MGP_AJ_P0060380 Skil protein_coding protein_coding MGP_AJ_T0060381.1 MGP_AJ_G0027091.1 mouse_genomes_project 3 28243493 28246322 + MGP_AJ_P0060381 Skil protein_coding protein_coding MGP_AJ_T0060382.1 MGP_AJ_G0027091.1 mouse_genomes_project 3 28243553 28268017 + MGP_AJ_P0060382 Skil protein_coding protein_coding MGP_AJ_T0060383.1 MGP_AJ_G0027091.1 mouse_genomes_project 3 28245262 28267728 + MGP_AJ_P0060383 Skil protein_coding protein_coding MGP_AJ_T0060384.1 MGP_AJ_G0027091.1 mouse_genomes_project 3 28245760 28271350 + MGP_AJ_P0060384 Skil protein_coding unknown_likely_coding MGP_AJ_T0014363.1 MGP_AJ_G0012458.1 mouse_genomes_project 3 142855303 142856978 + processed_pseudogene processed_pseudogene MGP_AJ_T0014013.1 MGP_AJ_G0012108.1 mouse_genomes_project 3 38525534 38525997 + processed_pseudogene processed_pseudogene MGP_AJ_T0061010.1 MGP_AJ_G0027211.1 mouse_genomes_project 3 57170332 57188302 + MGP_AJ_P0061010 Aadacl2 protein_coding protein_coding MGP_AJ_T0061975.1 MGP_AJ_G0027414.1 mouse_genomes_project 3 87263407 87266770 - MGP_AJ_P0061975 Hax1 protein_coding protein_coding MGP_AJ_T0061976.1 MGP_AJ_G0027414.1 mouse_genomes_project 3 87263701 87267065 - MGP_AJ_P0061976 Hax1 protein_coding unknown_likely_coding MGP_AJ_T0061977.1 MGP_AJ_G0027414.1 mouse_genomes_project 3 87263701 87267001 - MGP_AJ_P0061977 Hax1 protein_coding protein_coding MGP_AJ_T0061978.1 MGP_AJ_G0027414.1 mouse_genomes_project 3 87264043 87267061 - MGP_AJ_P0061978 Hax1 protein_coding nonsense_mediated_decay MGP_AJ_T0061979.1 MGP_AJ_G0027414.1 mouse_genomes_project 3 87265900 87267161 - Hax1 protein_coding retained_intron MGP_AJ_T0061980.1 MGP_AJ_G0027414.1 mouse_genomes_project 3 87266150 87266743 - MGP_AJ_P0061980 Hax1 protein_coding protein_coding MGP_AJ_T0014069.1 MGP_AJ_G0012164.1 mouse_genomes_project 3 56806695 56806837 - processed_pseudogene processed_pseudogene MGP_AJ_T0061743.1 MGP_AJ_G0027374.1 mouse_genomes_project 3 86142314 86151182 - MGP_AJ_P0061743 Msto1 protein_coding protein_coding MGP_AJ_T0061744.1 MGP_AJ_G0027374.1 mouse_genomes_project 3 86145835 86149325 - Msto1 protein_coding retained_intron MGP_AJ_T0061745.1 MGP_AJ_G0027374.1 mouse_genomes_project 3 86146865 86151250 - MGP_AJ_P0061745 Msto1 protein_coding protein_coding MGP_AJ_T0061746.1 MGP_AJ_G0027374.1 mouse_genomes_project 3 86146894 86151154 - Msto1 protein_coding retained_intron MGP_AJ_T0061747.1 MGP_AJ_G0027374.1 mouse_genomes_project 3 86148609 86151133 - Msto1 protein_coding retained_intron MGP_AJ_T0061518.1 MGP_AJ_G0027332.1 mouse_genomes_project 3 84919025 84935956 - MGP_AJ_P0061518 Ntrk1 protein_coding protein_coding MGP_AJ_T0001149.1 MGP_AJ_G0001075.1 mouse_genomes_project 3 33097418 33100061 - TEC TEC MGP_AJ_T0013934.1 MGP_AJ_G0012029.1 mouse_genomes_project 3 11541966 11548470 - processed_pseudogene processed_pseudogene MGP_AJ_T0099850.1 MGP_AJ_G0037816.1 mouse_genomes_project 3 87234680 87234845 - Gm24046 snRNA snRNA MGP_AJ_T0018016.1 MGP_AJ_G0015504.1 mouse_genomes_project 3 140924744 140941756 + Gm43646 processed_transcript processed_transcript MGP_AJ_T0099005.1 MGP_AJ_G0036982.1 mouse_genomes_project 3 102776475 102778216 - Gm42659 sense_intronic sense_intronic MGP_AJ_T0004354.1 MGP_AJ_G0003801.1 mouse_genomes_project 3 114373283 114376069 + Gm29151 antisense antisense MGP_AJ_T0007523.1 MGP_AJ_G0006161.1 mouse_genomes_project 3 35758958 35760266 + Gm43538 lincRNA lincRNA MGP_AJ_T0061556.1 MGP_AJ_G0027342.1 mouse_genomes_project 3 85131728 85144422 - MGP_AJ_P0061556 Bcan protein_coding protein_coding MGP_AJ_T0061557.1 MGP_AJ_G0027342.1 mouse_genomes_project 3 85136707 85138659 - Bcan protein_coding retained_intron MGP_AJ_T0061558.1 MGP_AJ_G0027342.1 mouse_genomes_project 3 85136707 85142045 - Bcan protein_coding retained_intron MGP_AJ_T0061559.1 MGP_AJ_G0027342.1 mouse_genomes_project 3 85137787 85140555 - Bcan protein_coding retained_intron MGP_AJ_T0061560.1 MGP_AJ_G0027342.1 mouse_genomes_project 3 85140634 85141455 - Bcan protein_coding retained_intron MGP_AJ_T0061561.1 MGP_AJ_G0027342.1 mouse_genomes_project 3 85141322 85143826 - MGP_AJ_P0061561 Bcan protein_coding protein_coding MGP_AJ_T0060277.1 MGP_AJ_G0027075.1 mouse_genomes_project 3 25395211 25790988 + MGP_AJ_P0060277 Tnik protein_coding nonsense_mediated_decay MGP_AJ_T0060278.1 MGP_AJ_G0027075.1 mouse_genomes_project 3 25395212 25796262 + MGP_AJ_P0060278 Tnik protein_coding protein_coding MGP_AJ_T0060279.1 MGP_AJ_G0027075.1 mouse_genomes_project 3 25395273 25492496 + Tnik protein_coding retained_intron MGP_AJ_T0060280.1 MGP_AJ_G0027075.1 mouse_genomes_project 3 25395273 25626342 + Tnik protein_coding retained_intron MGP_AJ_T0060281.1 MGP_AJ_G0027075.1 mouse_genomes_project 3 25395560 25786853 + Tnik protein_coding retained_intron MGP_AJ_T0060282.1 MGP_AJ_G0027075.1 mouse_genomes_project 3 25395560 25788626 + MGP_AJ_P0060282 Tnik protein_coding protein_coding MGP_AJ_T0060283.1 MGP_AJ_G0027075.1 mouse_genomes_project 3 25395560 25788626 + MGP_AJ_P0060283 Tnik protein_coding protein_coding MGP_AJ_T0060284.1 MGP_AJ_G0027075.1 mouse_genomes_project 3 25395579 25396860 + Tnik protein_coding retained_intron MGP_AJ_T0060285.1 MGP_AJ_G0027075.1 mouse_genomes_project 3 25395640 25788385 + MGP_AJ_P0060285 Tnik protein_coding protein_coding MGP_AJ_T0060286.1 MGP_AJ_G0027075.1 mouse_genomes_project 3 25395640 25788385 + MGP_AJ_P0060286 Tnik protein_coding protein_coding MGP_AJ_T0060287.1 MGP_AJ_G0027075.1 mouse_genomes_project 3 25395640 25788385 + MGP_AJ_P0060287 Tnik protein_coding protein_coding MGP_AJ_T0060288.1 MGP_AJ_G0027075.1 mouse_genomes_project 3 25395640 25788385 + MGP_AJ_P0060288 Tnik protein_coding protein_coding MGP_AJ_T0060289.1 MGP_AJ_G0027075.1 mouse_genomes_project 3 25395640 25788385 + MGP_AJ_P0060289 Tnik protein_coding protein_coding MGP_AJ_T0060290.1 MGP_AJ_G0027075.1 mouse_genomes_project 3 25541551 25719073 + Tnik protein_coding processed_transcript MGP_AJ_T0060291.1 MGP_AJ_G0027075.1 mouse_genomes_project 3 25661278 25663093 + Tnik protein_coding retained_intron MGP_AJ_T0060292.1 MGP_AJ_G0027075.1 mouse_genomes_project 3 25750772 25759338 + Tnik protein_coding retained_intron MGP_AJ_T0060293.1 MGP_AJ_G0027075.1 mouse_genomes_project 3 25770745 25786349 + Tnik protein_coding retained_intron MGP_AJ_T0060294.1 MGP_AJ_G0027075.1 mouse_genomes_project 3 25787248 25789152 + Tnik protein_coding retained_intron MGP_AJ_T0101166.1 MGP_AJ_G0039132.1 mouse_genomes_project 3 128936249 128936377 - Gm26090 snoRNA snoRNA MGP_AJ_T0062806.1 MGP_AJ_G0027636.1 mouse_genomes_project 3 99743306 99766344 - MGP_AJ_P0062806 Mab21l3 protein_coding protein_coding MGP_AJ_T0062807.1 MGP_AJ_G0027636.1 mouse_genomes_project 3 99743913 99780129 - MGP_AJ_P0062807 Mab21l3 protein_coding protein_coding MGP_AJ_T0061455.1 MGP_AJ_G0027320.1 mouse_genomes_project 3 83895226 84036341 - MGP_AJ_P0061455 Dclk2 protein_coding protein_coding MGP_AJ_T0061456.1 MGP_AJ_G0027320.1 mouse_genomes_project 3 83895228 84036150 - MGP_AJ_P0061456 Dclk2 protein_coding nonsense_mediated_decay MGP_AJ_T0061457.1 MGP_AJ_G0027320.1 mouse_genomes_project 3 83895228 84036814 - MGP_AJ_P0061457 Dclk2 protein_coding protein_coding MGP_AJ_T0061458.1 MGP_AJ_G0027320.1 mouse_genomes_project 3 83895234 84036297 - MGP_AJ_P0061458 Dclk2 protein_coding protein_coding MGP_AJ_T0061459.1 MGP_AJ_G0027320.1 mouse_genomes_project 3 83896287 84036132 - MGP_AJ_P0061459 Dclk2 protein_coding protein_coding MGP_AJ_T0061460.1 MGP_AJ_G0027320.1 mouse_genomes_project 3 83896316 83901391 - Dclk2 protein_coding processed_transcript MGP_AJ_T0061461.1 MGP_AJ_G0027320.1 mouse_genomes_project 3 83896424 83908236 - Dclk2 protein_coding processed_transcript MGP_AJ_T0061462.1 MGP_AJ_G0027320.1 mouse_genomes_project 3 83898421 83907088 - Dclk2 protein_coding processed_transcript MGP_AJ_T0061463.1 MGP_AJ_G0027320.1 mouse_genomes_project 3 83907996 84036336 - MGP_AJ_P0061463 Dclk2 protein_coding protein_coding MGP_AJ_T0014120.1 MGP_AJ_G0012215.1 mouse_genomes_project 3 69372678 69372897 + processed_pseudogene processed_pseudogene MGP_AJ_T0061275.1 MGP_AJ_G0027274.1 mouse_genomes_project 3 76569115 76682518 - MGP_AJ_P0061275 Fnip2 protein_coding unknown_likely_coding MGP_AJ_T0061276.1 MGP_AJ_G0027274.1 mouse_genomes_project 3 76571142 76682566 - MGP_AJ_P0061276 Fnip2 protein_coding protein_coding MGP_AJ_T0061277.1 MGP_AJ_G0027274.1 mouse_genomes_project 3 76571441 76612440 - Fnip2 protein_coding retained_intron MGP_AJ_T0061278.1 MGP_AJ_G0027274.1 mouse_genomes_project 3 76616145 76626984 - Fnip2 protein_coding processed_transcript MGP_AJ_T0061279.1 MGP_AJ_G0027274.1 mouse_genomes_project 3 76617734 76682563 - Fnip2 protein_coding retained_intron MGP_AJ_T0001202.1 MGP_AJ_G0001126.1 mouse_genomes_project 3 49008734 49010951 - TEC TEC MGP_AJ_T0101114.1 MGP_AJ_G0039080.1 mouse_genomes_project 3 35139289 35139420 - Gm22899 snoRNA snoRNA MGP_AJ_T0099886.1 MGP_AJ_G0037852.1 mouse_genomes_project 3 147476229 147476335 - Gm26468 snRNA snRNA MGP_AJ_T0007653.1 MGP_AJ_G0006257.1 mouse_genomes_project 3 100642481 100643746 + Gm42682 lincRNA lincRNA MGP_AJ_T0061054.1 MGP_AJ_G0027221.1 mouse_genomes_project 3 60411787 60497409 + MGP_AJ_P0061054 Mme protein_coding protein_coding MGP_AJ_T0061055.1 MGP_AJ_G0027221.1 mouse_genomes_project 3 60464855 60497778 + MGP_AJ_P0061055 Mme protein_coding protein_coding MGP_AJ_T0061056.1 MGP_AJ_G0027221.1 mouse_genomes_project 3 60465037 60497770 + MGP_AJ_P0061056 Mme protein_coding protein_coding MGP_AJ_T0061057.1 MGP_AJ_G0027221.1 mouse_genomes_project 3 60465150 60550228 + MGP_AJ_P0061057 Mme protein_coding protein_coding MGP_AJ_T0061058.1 MGP_AJ_G0027221.1 mouse_genomes_project 3 60465461 60555465 + MGP_AJ_P0061058 Mme protein_coding protein_coding MGP_AJ_T0061059.1 MGP_AJ_G0027221.1 mouse_genomes_project 3 60465684 60550755 + MGP_AJ_P0061059 Mme protein_coding protein_coding MGP_AJ_T0061060.1 MGP_AJ_G0027221.1 mouse_genomes_project 3 60466641 60497650 + MGP_AJ_P0061060 Mme protein_coding protein_coding MGP_AJ_T0061061.1 MGP_AJ_G0027221.1 mouse_genomes_project 3 60469749 60514406 + Mme protein_coding retained_intron MGP_AJ_T0007460.1 MGP_AJ_G0006113.1 mouse_genomes_project 3 8951437 8977925 - Gm10745 lincRNA lincRNA MGP_AJ_T0001239.1 MGP_AJ_G0001163.1 mouse_genomes_project 3 65611557 65618475 + TEC TEC MGP_AJ_T0062653.1 MGP_AJ_G0027595.1 mouse_genomes_project 3 94571955 94603848 - MGP_AJ_P0062653 Cd160 protein_coding protein_coding MGP_AJ_T0062654.1 MGP_AJ_G0027595.1 mouse_genomes_project 3 94571955 94603848 - MGP_AJ_P0062654 Cd160 protein_coding protein_coding MGP_AJ_T0062655.1 MGP_AJ_G0027595.1 mouse_genomes_project 3 94573347 94589159 - MGP_AJ_P0062655 Cd160 protein_coding protein_coding MGP_AJ_T0062656.1 MGP_AJ_G0027595.1 mouse_genomes_project 3 94573795 94583506 - MGP_AJ_P0062656 Cd160 protein_coding unknown_likely_coding MGP_AJ_T0060344.1 MGP_AJ_G0027085.1 mouse_genomes_project 3 27808815 27830036 - MGP_AJ_P0060344 Lrrc31 protein_coding protein_coding MGP_AJ_T0060345.1 MGP_AJ_G0027085.1 mouse_genomes_project 3 27812434 27830049 - MGP_AJ_P0060345 Lrrc31 protein_coding protein_coding MGP_AJ_T0060346.1 MGP_AJ_G0027085.1 mouse_genomes_project 3 27828147 27829974 - Lrrc31 protein_coding retained_intron MGP_AJ_T0060347.1 MGP_AJ_G0027085.1 mouse_genomes_project 3 27828322 27830016 - Lrrc31 protein_coding processed_transcript MGP_AJ_T0063421.1 MGP_AJ_G0027772.1 mouse_genomes_project 3 114622610 114650399 + MGP_AJ_P0063421 Sass6 protein_coding protein_coding MGP_AJ_T0063422.1 MGP_AJ_G0027772.1 mouse_genomes_project 3 114622631 114634235 + Sass6 protein_coding processed_transcript MGP_AJ_T0063423.1 MGP_AJ_G0027772.1 mouse_genomes_project 3 114622640 114659775 + MGP_AJ_P0063423 Sass6 protein_coding nonsense_mediated_decay MGP_AJ_T0063424.1 MGP_AJ_G0027772.1 mouse_genomes_project 3 114622699 114657571 + MGP_AJ_P0063424 Sass6 protein_coding protein_coding MGP_AJ_T0063426.1 MGP_AJ_G0027772.1 mouse_genomes_project 3 114642127 114648048 + Sass6 protein_coding processed_transcript MGP_AJ_T0063428.1 MGP_AJ_G0027772.1 mouse_genomes_project 3 114650255 114656323 + Sass6 protein_coding retained_intron MGP_AJ_T0063429.1 MGP_AJ_G0027772.1 mouse_genomes_project 3 114654705 114657889 + Sass6 protein_coding retained_intron MGP_AJ_T0101139.1 MGP_AJ_G0039105.1 mouse_genomes_project 3 84178007 84178139 + Gm24472 snoRNA snoRNA MGP_AJ_T0001146.1 MGP_AJ_G0001072.1 mouse_genomes_project 3 31832965 31833079 + TEC TEC MGP_AJ_T0014339.1 MGP_AJ_G0012434.1 mouse_genomes_project 3 135952601 135952959 + processed_pseudogene processed_pseudogene MGP_AJ_T0004346.1 MGP_AJ_G0003794.1 mouse_genomes_project 3 106143180 106145608 + Gm12500 antisense antisense MGP_AJ_T0004347.1 MGP_AJ_G0003794.1 mouse_genomes_project 3 106143572 106145606 + Gm12500 antisense antisense MGP_AJ_T0001377.1 MGP_AJ_G0001300.1 mouse_genomes_project 3 150022755 150026234 + TEC TEC MGP_AJ_T0014370.1 MGP_AJ_G0012465.1 mouse_genomes_project 3 146796111 146796627 + processed_pseudogene processed_pseudogene MGP_AJ_T0098671.1 MGP_AJ_G0036655.1 mouse_genomes_project 3 86143717 86143836 + n-R5s197 rRNA rRNA MGP_AJ_T0007477.1 MGP_AJ_G0006121.1 mouse_genomes_project 3 15441139 15561519 - lincRNA lincRNA MGP_AJ_T0061532.1 MGP_AJ_G0027337.1 mouse_genomes_project 3 85061574 85066436 + MGP_AJ_P0061532 Mrpl24 protein_coding protein_coding MGP_AJ_T0061533.1 MGP_AJ_G0027337.1 mouse_genomes_project 3 85061574 85066426 + MGP_AJ_P0061533 Mrpl24 protein_coding protein_coding MGP_AJ_T0061534.1 MGP_AJ_G0027337.1 mouse_genomes_project 3 85061604 85064817 + MGP_AJ_P0061534 Mrpl24 protein_coding protein_coding MGP_AJ_T0061535.1 MGP_AJ_G0027337.1 mouse_genomes_project 3 85061625 85062590 + Mrpl24 protein_coding retained_intron MGP_AJ_T0061536.1 MGP_AJ_G0027337.1 mouse_genomes_project 3 85061631 85066436 + MGP_AJ_P0061536 Mrpl24 protein_coding protein_coding MGP_AJ_T0061537.1 MGP_AJ_G0027337.1 mouse_genomes_project 3 85064419 85066436 + MGP_AJ_P0061537 Mrpl24 protein_coding protein_coding MGP_AJ_T0063620.1 MGP_AJ_G0027810.1 mouse_genomes_project 3 121623322 121765154 - MGP_AJ_P0063620 Ndst3 protein_coding protein_coding MGP_AJ_T0063621.1 MGP_AJ_G0027810.1 mouse_genomes_project 3 121623328 121783036 - MGP_AJ_P0063621 Ndst3 protein_coding nonsense_mediated_decay MGP_AJ_T0063622.1 MGP_AJ_G0027810.1 mouse_genomes_project 3 121623330 121783036 - MGP_AJ_P0063622 Ndst3 protein_coding protein_coding MGP_AJ_T0063623.1 MGP_AJ_G0027810.1 mouse_genomes_project 3 121623331 121765069 - MGP_AJ_P0063623 Ndst3 protein_coding protein_coding MGP_AJ_T0063624.1 MGP_AJ_G0027810.1 mouse_genomes_project 3 121625720 121713326 - MGP_AJ_P0063624 Ndst3 protein_coding protein_coding MGP_AJ_T0063625.1 MGP_AJ_G0027810.1 mouse_genomes_project 3 121625849 121782464 - MGP_AJ_P0063625 Ndst3 protein_coding protein_coding MGP_AJ_T0063626.1 MGP_AJ_G0027810.1 mouse_genomes_project 3 121648501 121765254 - Ndst3 protein_coding retained_intron MGP_AJ_T0063627.1 MGP_AJ_G0027810.1 mouse_genomes_project 3 121652336 121655796 - Ndst3 protein_coding retained_intron MGP_AJ_T0063628.1 MGP_AJ_G0027810.1 mouse_genomes_project 3 121652507 121670605 - Ndst3 protein_coding processed_transcript MGP_AJ_T0062381.1 MGP_AJ_G0027533.1 mouse_genomes_project 3 92929043 92933188 - Gabpb2 protein_coding retained_intron MGP_AJ_T0062382.1 MGP_AJ_G0027533.1 mouse_genomes_project 3 92929179 92959598 - Gabpb2 protein_coding retained_intron MGP_AJ_T0062383.1 MGP_AJ_G0027533.1 mouse_genomes_project 3 92930124 92960027 - MGP_AJ_P0062383 Gabpb2 protein_coding protein_coding MGP_AJ_T0062384.1 MGP_AJ_G0027533.1 mouse_genomes_project 3 92939394 92959805 - Gabpb2 protein_coding retained_intron MGP_AJ_T0062385.1 MGP_AJ_G0027533.1 mouse_genomes_project 3 92941544 92959805 - Gabpb2 protein_coding retained_intron MGP_AJ_T0062386.1 MGP_AJ_G0027533.1 mouse_genomes_project 3 92944987 92959643 - MGP_AJ_P0062386 Gabpb2 protein_coding protein_coding MGP_AJ_T0062387.1 MGP_AJ_G0027533.1 mouse_genomes_project 3 92957124 92959583 - Gabpb2 protein_coding processed_transcript MGP_AJ_T0062912.1 MGP_AJ_G0027654.1 mouse_genomes_project 3 101590597 101592154 - MGP_AJ_P0062912 Atg4a-ps protein_coding protein_coding MGP_AJ_T0007697.1 MGP_AJ_G0006290.1 mouse_genomes_project 3 124233169 124235192 + Gm42827 lincRNA lincRNA MGP_AJ_T0062589.1 MGP_AJ_G0027574.1 mouse_genomes_project 3 94034189 94034677 + MGP_AJ_P0062589 Hist2h3b protein_coding protein_coding MGP_AJ_T0007740.1 MGP_AJ_G0006328.1 mouse_genomes_project 3 141059547 141082243 + 4930519L02Rik lincRNA lincRNA MGP_AJ_T0060993.1 MGP_AJ_G0027204.1 mouse_genomes_project 3 56239697 56240889 - Gpr87 protein_coding retained_intron MGP_AJ_T0060994.1 MGP_AJ_G0027204.1 mouse_genomes_project 3 56239697 56255870 - MGP_AJ_P0060994 Gpr87 protein_coding protein_coding MGP_AJ_T0060995.1 MGP_AJ_G0027204.1 mouse_genomes_project 3 56239780 56240860 - MGP_AJ_P0060995 Gpr87 protein_coding protein_coding MGP_AJ_T0101109.1 MGP_AJ_G0039075.1 mouse_genomes_project 3 24238381 24238495 + Gm25152 snoRNA snoRNA MGP_AJ_T0064224.1 MGP_AJ_G0027924.1 mouse_genomes_project 3 144124308 144161002 + MGP_AJ_P0064224 Syde2 protein_coding protein_coding MGP_AJ_T0064225.1 MGP_AJ_G0027924.1 mouse_genomes_project 3 144125091 144161002 + MGP_AJ_P0064225 Syde2 protein_coding protein_coding MGP_AJ_T0064226.1 MGP_AJ_G0027924.1 mouse_genomes_project 3 144125241 144161009 + MGP_AJ_P0064226 Syde2 protein_coding unknown_likely_coding MGP_AJ_T0064227.1 MGP_AJ_G0027924.1 mouse_genomes_project 3 144130800 144135427 + Syde2 protein_coding processed_transcript MGP_AJ_T0064532.1 MGP_AJ_G0027973.1 mouse_genomes_project 3 156258404 156284640 - MGP_AJ_P0064532 Srsf11 protein_coding protein_coding MGP_AJ_T0064533.1 MGP_AJ_G0027973.1 mouse_genomes_project 3 156258575 156271484 - Srsf11 protein_coding retained_intron MGP_AJ_T0064534.1 MGP_AJ_G0027973.1 mouse_genomes_project 3 156258850 156279766 - MGP_AJ_P0064534 Srsf11 protein_coding protein_coding MGP_AJ_T0064535.1 MGP_AJ_G0027973.1 mouse_genomes_project 3 156259434 156271202 - Srsf11 protein_coding retained_intron MGP_AJ_T0064536.1 MGP_AJ_G0027973.1 mouse_genomes_project 3 156259800 156284552 - MGP_AJ_P0064536 Srsf11 protein_coding protein_coding MGP_AJ_T0064537.1 MGP_AJ_G0027973.1 mouse_genomes_project 3 156259825 156260452 - Srsf11 protein_coding retained_intron MGP_AJ_T0064538.1 MGP_AJ_G0027973.1 mouse_genomes_project 3 156260274 156261079 - Srsf11 protein_coding retained_intron MGP_AJ_T0064539.1 MGP_AJ_G0027973.1 mouse_genomes_project 3 156260282 156270066 - MGP_AJ_P0064539 Srsf11 protein_coding protein_coding MGP_AJ_T0064540.1 MGP_AJ_G0027973.1 mouse_genomes_project 3 156261919 156271731 - Srsf11 protein_coding retained_intron MGP_AJ_T0064541.1 MGP_AJ_G0027973.1 mouse_genomes_project 3 156264251 156266044 - Srsf11 protein_coding retained_intron MGP_AJ_T0064542.1 MGP_AJ_G0027973.1 mouse_genomes_project 3 156267320 156284597 - MGP_AJ_P0064542 Srsf11 protein_coding nonsense_mediated_decay MGP_AJ_T0064543.1 MGP_AJ_G0027973.1 mouse_genomes_project 3 156267360 156284616 - MGP_AJ_P0064543 Srsf11 protein_coding protein_coding MGP_AJ_T0064544.1 MGP_AJ_G0027973.1 mouse_genomes_project 3 156270074 156279455 - MGP_AJ_P0064544 Srsf11 protein_coding nonsense_mediated_decay MGP_AJ_T0064545.1 MGP_AJ_G0027973.1 mouse_genomes_project 3 156270991 156279571 - MGP_AJ_P0064545 Srsf11 protein_coding nonsense_mediated_decay MGP_AJ_T0064546.1 MGP_AJ_G0027973.1 mouse_genomes_project 3 156271470 156284607 - Srsf11 protein_coding retained_intron MGP_AJ_T0064547.1 MGP_AJ_G0027973.1 mouse_genomes_project 3 156272796 156284612 - Srsf11 protein_coding retained_intron MGP_AJ_T0064548.1 MGP_AJ_G0027973.1 mouse_genomes_project 3 156274585 156279760 - Srsf11 protein_coding retained_intron MGP_AJ_T0064549.1 MGP_AJ_G0027973.1 mouse_genomes_project 3 156278196 156279754 - Srsf11 protein_coding retained_intron MGP_AJ_T0064550.1 MGP_AJ_G0027973.1 mouse_genomes_project 3 156278817 156284615 - Srsf11 protein_coding retained_intron MGP_AJ_T0011532.1 MGP_AJ_G0009654.1 mouse_genomes_project 3 16462413 16462725 + Gm22282 misc_RNA misc_RNA MGP_AJ_T0007508.1 MGP_AJ_G0006149.1 mouse_genomes_project 3 32734010 32787060 - Gm6639 lincRNA lincRNA MGP_AJ_T0014105.1 MGP_AJ_G0012200.1 mouse_genomes_project 3 66527690 66527949 - processed_pseudogene processed_pseudogene MGP_AJ_T0060373.1 MGP_AJ_G0027090.1 mouse_genomes_project 3 28137682 28194580 + MGP_AJ_P0060373 Prkci protein_coding protein_coding MGP_AJ_T0060374.1 MGP_AJ_G0027090.1 mouse_genomes_project 3 28147128 28176172 + MGP_AJ_P0060374 Prkci protein_coding protein_coding MGP_AJ_T0060375.1 MGP_AJ_G0027090.1 mouse_genomes_project 3 28173380 28181085 + Prkci protein_coding processed_transcript MGP_AJ_T0060376.1 MGP_AJ_G0027090.1 mouse_genomes_project 3 28180137 28182912 + MGP_AJ_P0060376 Prkci protein_coding protein_coding MGP_AJ_T0060377.1 MGP_AJ_G0027090.1 mouse_genomes_project 3 28180202 28181657 + Prkci protein_coding retained_intron MGP_AJ_T0017967.1 MGP_AJ_G0015487.1 mouse_genomes_project 3 92038530 92042867 - Gm36070 processed_transcript lincRNA MGP_AJ_T0017968.1 MGP_AJ_G0015487.1 mouse_genomes_project 3 92039349 92041237 - Gm36070 processed_transcript retained_intron MGP_AJ_T0001317.1 MGP_AJ_G0001241.1 mouse_genomes_project 3 122431691 122432626 - TEC TEC MGP_AJ_T0004308.1 MGP_AJ_G0003776.1 mouse_genomes_project 3 94318123 94320164 - Gm15441 antisense antisense MGP_AJ_T0004309.1 MGP_AJ_G0003776.1 mouse_genomes_project 3 94318146 94329169 - Gm15441 antisense antisense MGP_AJ_T0007587.1 MGP_AJ_G0006207.1 mouse_genomes_project 3 76683075 76687495 + 4930589L23Rik lincRNA lincRNA MGP_AJ_T0063018.1 MGP_AJ_G0027677.1 mouse_genomes_project 3 103401910 103621872 + MGP_AJ_P0063018 Kcnd3 protein_coding protein_coding MGP_AJ_T0063019.1 MGP_AJ_G0027677.1 mouse_genomes_project 3 103402167 103615458 + Kcnd3 protein_coding retained_intron MGP_AJ_T0063020.1 MGP_AJ_G0027677.1 mouse_genomes_project 3 103402680 103617330 + MGP_AJ_P0063020 Kcnd3 protein_coding protein_coding MGP_AJ_T0063021.1 MGP_AJ_G0027677.1 mouse_genomes_project 3 103408352 103617179 + MGP_AJ_P0063021 Kcnd3 protein_coding protein_coding MGP_AJ_T0063022.1 MGP_AJ_G0027677.1 mouse_genomes_project 3 103616874 103617714 + Kcnd3 protein_coding processed_transcript MGP_AJ_T0063521.1 MGP_AJ_G0027790.1 mouse_genomes_project 3 119745192 119757397 + MGP_AJ_P0063521 4930432M17Rik protein_coding protein_coding MGP_AJ_T0063522.1 MGP_AJ_G0027790.1 mouse_genomes_project 3 119745747 119757250 + MGP_AJ_P0063522 4930432M17Rik protein_coding protein_coding MGP_AJ_T0060213.1 MGP_AJ_G0027061.1 mouse_genomes_project 3 17348763 17376553 - MGP_AJ_P0060213 Cpa3 protein_coding protein_coding MGP_AJ_T0060214.1 MGP_AJ_G0027061.1 mouse_genomes_project 3 17362165 17375119 - Cpa3 protein_coding processed_transcript MGP_AJ_T0018009.1 MGP_AJ_G0015502.1 mouse_genomes_project 3 126171243 126286791 - D030025E07Rik processed_transcript lincRNA MGP_AJ_T0018010.1 MGP_AJ_G0015502.1 mouse_genomes_project 3 126178433 126187688 - D030025E07Rik processed_transcript lincRNA MGP_AJ_T0018011.1 MGP_AJ_G0015502.1 mouse_genomes_project 3 126178810 126286794 - D030025E07Rik processed_transcript retained_intron MGP_AJ_T0018012.1 MGP_AJ_G0015502.1 mouse_genomes_project 3 126197473 126286741 - D030025E07Rik processed_transcript retained_intron MGP_AJ_T0018013.1 MGP_AJ_G0015502.1 mouse_genomes_project 3 126250662 126286780 - D030025E07Rik processed_transcript lincRNA MGP_AJ_T0014132.1 MGP_AJ_G0012227.1 mouse_genomes_project 3 75108571 75109984 + processed_pseudogene processed_pseudogene MGP_AJ_T0001186.1 MGP_AJ_G0001112.1 mouse_genomes_project 3 48310814 48311230 - TEC TEC MGP_AJ_T0061307.1 MGP_AJ_G0027281.1 mouse_genomes_project 3 77779218 77895500 - MGP_AJ_P0061307 Gria2 protein_coding protein_coding MGP_AJ_T0061308.1 MGP_AJ_G0027281.1 mouse_genomes_project 3 77785574 77895500 - MGP_AJ_P0061308 Gria2 protein_coding protein_coding MGP_AJ_T0061309.1 MGP_AJ_G0027281.1 mouse_genomes_project 3 77785819 77895244 - MGP_AJ_P0061309 Gria2 protein_coding nonsense_mediated_decay MGP_AJ_T0061310.1 MGP_AJ_G0027281.1 mouse_genomes_project 3 77789259 77895456 - Gria2 protein_coding retained_intron MGP_AJ_T0061311.1 MGP_AJ_G0027281.1 mouse_genomes_project 3 77802370 77895315 - Gria2 protein_coding retained_intron MGP_AJ_T0061312.1 MGP_AJ_G0027281.1 mouse_genomes_project 3 77804051 77895389 - Gria2 protein_coding retained_intron MGP_AJ_T0061313.1 MGP_AJ_G0027281.1 mouse_genomes_project 3 77805291 77895445 - Gria2 protein_coding retained_intron MGP_AJ_T0061314.1 MGP_AJ_G0027281.1 mouse_genomes_project 3 77892701 77895358 - Gria2 protein_coding retained_intron MGP_AJ_T0061632.1 MGP_AJ_G0027358.1 mouse_genomes_project 3 85546304 85547263 - MGP_AJ_P0061632 Bglap protein_coding protein_coding MGP_AJ_T0063348.1 MGP_AJ_G0027757.1 mouse_genomes_project 3 111610115 111632139 - MGP_AJ_P0063348 Amy1 protein_coding protein_coding MGP_AJ_T0063349.1 MGP_AJ_G0027757.1 mouse_genomes_project 3 111610358 111629071 - MGP_AJ_P0063349 Amy1 protein_coding protein_coding MGP_AJ_T0063350.1 MGP_AJ_G0027757.1 mouse_genomes_project 3 111610554 111616312 - Amy1 protein_coding retained_intron MGP_AJ_T0063351.1 MGP_AJ_G0027757.1 mouse_genomes_project 3 111616983 111628581 - MGP_AJ_P0063351 Amy1 protein_coding protein_coding MGP_AJ_T0063352.1 MGP_AJ_G0027757.1 mouse_genomes_project 3 111619280 111663820 - MGP_AJ_P0063352 Amy1 protein_coding protein_coding MGP_AJ_T0061040.1 MGP_AJ_G0027216.1 mouse_genomes_project 3 58552160 58558952 + MGP_AJ_P0061040 Rap2b protein_coding protein_coding MGP_AJ_T0064282.1 MGP_AJ_G0027938.1 mouse_genomes_project 3 144862253 144946657 - MGP_AJ_P0064282 Prkacb protein_coding protein_coding MGP_AJ_T0064283.1 MGP_AJ_G0027938.1 mouse_genomes_project 3 144862544 144903029 - MGP_AJ_P0064283 Prkacb protein_coding protein_coding MGP_AJ_T0064284.1 MGP_AJ_G0027938.1 mouse_genomes_project 3 144862544 144902509 - MGP_AJ_P0064284 Prkacb protein_coding protein_coding MGP_AJ_T0064285.1 MGP_AJ_G0027938.1 mouse_genomes_project 3 144862546 144913651 - MGP_AJ_P0064285 Prkacb protein_coding protein_coding MGP_AJ_T0064286.1 MGP_AJ_G0027938.1 mouse_genomes_project 3 144865007 144877863 - Prkacb protein_coding retained_intron MGP_AJ_T0064287.1 MGP_AJ_G0027938.1 mouse_genomes_project 3 144880208 144921751 - MGP_AJ_P0064287 Prkacb protein_coding protein_coding MGP_AJ_T0064288.1 MGP_AJ_G0027938.1 mouse_genomes_project 3 144880208 144896818 - MGP_AJ_P0064288 Prkacb protein_coding protein_coding MGP_AJ_T0064289.1 MGP_AJ_G0027938.1 mouse_genomes_project 3 144943214 144946687 - Prkacb protein_coding retained_intron MGP_AJ_T0099004.1 MGP_AJ_G0036981.1 mouse_genomes_project 3 102766466 102767997 - Gm42658 sense_intronic sense_intronic MGP_AJ_T0063879.1 MGP_AJ_G0027856.1 mouse_genomes_project 3 131301178 131370408 + MGP_AJ_P0063879 Ppa2 protein_coding protein_coding MGP_AJ_T0063880.1 MGP_AJ_G0027856.1 mouse_genomes_project 3 131301190 131370565 + MGP_AJ_P0063880 Ppa2 protein_coding protein_coding MGP_AJ_T0063881.1 MGP_AJ_G0027856.1 mouse_genomes_project 3 131301550 131362736 + Ppa2 protein_coding processed_transcript MGP_AJ_T0063882.1 MGP_AJ_G0027856.1 mouse_genomes_project 3 131312583 131317683 + Ppa2 protein_coding retained_intron MGP_AJ_T0063883.1 MGP_AJ_G0027856.1 mouse_genomes_project 3 131330054 131360218 + Ppa2 protein_coding processed_transcript MGP_AJ_T0063884.1 MGP_AJ_G0027856.1 mouse_genomes_project 3 131330227 131370412 + Ppa2 protein_coding retained_intron MGP_AJ_T0063885.1 MGP_AJ_G0027856.1 mouse_genomes_project 3 131339931 131370397 + MGP_AJ_P0063885 Ppa2 protein_coding protein_coding MGP_AJ_T0063886.1 MGP_AJ_G0027856.1 mouse_genomes_project 3 131364702 131366736 + Ppa2 protein_coding retained_intron MGP_AJ_T0001225.1 MGP_AJ_G0001149.1 mouse_genomes_project 3 54742933 54744230 - TEC TEC MGP_AJ_T0064462.1 MGP_AJ_G0027960.1 mouse_genomes_project 3 152190634 152497494 + MGP_AJ_P0064462 Slc44a5 protein_coding protein_coding MGP_AJ_T0064463.1 MGP_AJ_G0027960.1 mouse_genomes_project 3 152392183 152493552 + MGP_AJ_P0064463 Slc44a5 protein_coding unknown_likely_coding MGP_AJ_T0064464.1 MGP_AJ_G0027960.1 mouse_genomes_project 3 152448467 152451563 + Slc44a5 protein_coding processed_transcript MGP_AJ_T0064465.1 MGP_AJ_G0027960.1 mouse_genomes_project 3 152483255 152497494 + Slc44a5 protein_coding retained_intron MGP_AJ_T0014299.1 MGP_AJ_G0012394.1 mouse_genomes_project 3 122618256 122618930 - processed_pseudogene processed_pseudogene MGP_AJ_T0064413.1 MGP_AJ_G0027953.1 mouse_genomes_project 3 150913410 150990017 + MGP_AJ_P0064413 Pigk protein_coding protein_coding MGP_AJ_T0064414.1 MGP_AJ_G0027953.1 mouse_genomes_project 3 150913416 150941411 + Pigk protein_coding retained_intron MGP_AJ_T0064415.1 MGP_AJ_G0027953.1 mouse_genomes_project 3 150913423 150986539 + MGP_AJ_P0064415 Pigk protein_coding protein_coding MGP_AJ_T0064416.1 MGP_AJ_G0027953.1 mouse_genomes_project 3 150913423 151041466 + MGP_AJ_P0064416 Pigk protein_coding nonsense_mediated_decay MGP_AJ_T0064417.1 MGP_AJ_G0027953.1 mouse_genomes_project 3 150913430 151180286 + MGP_AJ_P0064417 Pigk protein_coding nonsense_mediated_decay MGP_AJ_T0064418.1 MGP_AJ_G0027953.1 mouse_genomes_project 3 150913433 150986270 + MGP_AJ_P0064418 Pigk protein_coding nonsense_mediated_decay MGP_AJ_T0064419.1 MGP_AJ_G0027953.1 mouse_genomes_project 3 150938170 150940324 + Pigk protein_coding processed_transcript MGP_AJ_T0064420.1 MGP_AJ_G0027953.1 mouse_genomes_project 3 150938389 150986465 + MGP_AJ_P0064420 Pigk protein_coding nonsense_mediated_decay MGP_AJ_T0064421.1 MGP_AJ_G0027953.1 mouse_genomes_project 3 150963595 150966896 + Pigk protein_coding processed_transcript MGP_AJ_T0013923.1 MGP_AJ_G0012018.1 mouse_genomes_project 3 8788830 8789844 - processed_pseudogene processed_pseudogene MGP_AJ_T0013903.1 MGP_AJ_G0011998.1 mouse_genomes_project 3 3738441 3738700 - processed_pseudogene processed_pseudogene MGP_AJ_T0007727.1 MGP_AJ_G0006317.1 mouse_genomes_project 3 135369004 135379911 + Gm567 lincRNA lincRNA MGP_AJ_T0007595.1 MGP_AJ_G0006215.1 mouse_genomes_project 3 80018789 80102108 - Gm30097 lincRNA lincRNA MGP_AJ_T0007596.1 MGP_AJ_G0006215.1 mouse_genomes_project 3 80018891 80089458 - Gm30097 lincRNA lincRNA MGP_AJ_T0064030.1 MGP_AJ_G0027883.1 mouse_genomes_project 3 136215025 136232422 - MGP_AJ_P0064030 4930579F01Rik protein_coding protein_coding MGP_AJ_T0064031.1 MGP_AJ_G0027883.1 mouse_genomes_project 3 136215082 136232462 - MGP_AJ_P0064031 4930579F01Rik protein_coding protein_coding MGP_AJ_T0064032.1 MGP_AJ_G0027883.1 mouse_genomes_project 3 136228756 136239581 - 4930579F01Rik protein_coding processed_transcript MGP_AJ_T0007712.1 MGP_AJ_G0006303.1 mouse_genomes_project 3 129746450 130022620 + lincRNA lincRNA MGP_AJ_T0061252.1 MGP_AJ_G0027270.1 mouse_genomes_project 3 73018864 73100076 - MGP_AJ_P0061252 Golim4 protein_coding protein_coding MGP_AJ_T0061253.1 MGP_AJ_G0027270.1 mouse_genomes_project 3 73019962 73100096 - MGP_AJ_P0061253 Golim4 protein_coding protein_coding MGP_AJ_T0061254.1 MGP_AJ_G0027270.1 mouse_genomes_project 3 73020258 73022751 - Golim4 protein_coding retained_intron MGP_AJ_T0061255.1 MGP_AJ_G0027270.1 mouse_genomes_project 3 73021439 73100084 - MGP_AJ_P0061255 Golim4 protein_coding protein_coding MGP_AJ_T0061256.1 MGP_AJ_G0027270.1 mouse_genomes_project 3 73030405 73036924 - Golim4 protein_coding retained_intron MGP_AJ_T0061257.1 MGP_AJ_G0027270.1 mouse_genomes_project 3 73038688 73046154 - MGP_AJ_P0061257 Golim4 protein_coding protein_coding MGP_AJ_T0061258.1 MGP_AJ_G0027270.1 mouse_genomes_project 3 73042935 73100055 - Golim4 protein_coding retained_intron MGP_AJ_T0061259.1 MGP_AJ_G0027270.1 mouse_genomes_project 3 73053542 73099797 - Golim4 protein_coding retained_intron MGP_AJ_T0061260.1 MGP_AJ_G0027270.1 mouse_genomes_project 3 73098262 73100078 - Golim4 protein_coding retained_intron MGP_AJ_T0001141.1 MGP_AJ_G0001067.1 mouse_genomes_project 3 31108692 31109640 + TEC TEC MGP_AJ_T0001269.1 MGP_AJ_G0001193.1 mouse_genomes_project 3 94029305 94030919 + TEC TEC MGP_AJ_T0099015.1 MGP_AJ_G0036992.1 mouse_genomes_project 3 142559930 142563117 - Gm43707 sense_intronic sense_intronic MGP_AJ_T0061917.1 MGP_AJ_G0027403.1 mouse_genomes_project 3 86666655 86674500 + MGP_AJ_P0061917 Shc1 protein_coding protein_coding MGP_AJ_T0061918.1 MGP_AJ_G0027403.1 mouse_genomes_project 3 86666671 86678876 + MGP_AJ_P0061918 Shc1 protein_coding protein_coding MGP_AJ_T0061919.1 MGP_AJ_G0027403.1 mouse_genomes_project 3 86666675 86672198 + MGP_AJ_P0061919 Shc1 protein_coding protein_coding MGP_AJ_T0061920.1 MGP_AJ_G0027403.1 mouse_genomes_project 3 86666698 86674656 + MGP_AJ_P0061920 Shc1 protein_coding protein_coding MGP_AJ_T0061921.1 MGP_AJ_G0027403.1 mouse_genomes_project 3 86668586 86671997 + Shc1 protein_coding retained_intron MGP_AJ_T0061922.1 MGP_AJ_G0027403.1 mouse_genomes_project 3 86669581 86677053 + MGP_AJ_P0061922 Shc1 protein_coding protein_coding MGP_AJ_T0061923.1 MGP_AJ_G0027403.1 mouse_genomes_project 3 86669595 86674656 + MGP_AJ_P0061923 Shc1 protein_coding protein_coding MGP_AJ_T0061924.1 MGP_AJ_G0027403.1 mouse_genomes_project 3 86672479 86675312 + Shc1 protein_coding processed_transcript MGP_AJ_T0101150.1 MGP_AJ_G0039116.1 mouse_genomes_project 3 98208606 98208683 + Gm25802 snoRNA snoRNA MGP_AJ_T0011535.1 MGP_AJ_G0009657.1 mouse_genomes_project 3 31708289 31708503 + Gm27403 misc_RNA misc_RNA MGP_AJ_T0001235.1 MGP_AJ_G0001159.1 mouse_genomes_project 3 63110143 63111704 - TEC TEC MGP_AJ_T0007734.1 MGP_AJ_G0006324.1 mouse_genomes_project 3 138722815 138795859 - lincRNA lincRNA MGP_AJ_T0007735.1 MGP_AJ_G0006324.1 mouse_genomes_project 3 138795225 138795859 - lincRNA lincRNA MGP_AJ_T0064131.1 MGP_AJ_G0027905.1 mouse_genomes_project 3 140833171 140925161 - MGP_AJ_P0064131 Pkn2 protein_coding protein_coding MGP_AJ_T0064132.1 MGP_AJ_G0027905.1 mouse_genomes_project 3 140835980 140925072 - MGP_AJ_P0064132 Pkn2 protein_coding nonsense_mediated_decay MGP_AJ_T0064133.1 MGP_AJ_G0027905.1 mouse_genomes_project 3 140836082 140924815 - MGP_AJ_P0064133 Pkn2 protein_coding protein_coding MGP_AJ_T0064134.1 MGP_AJ_G0027905.1 mouse_genomes_project 3 140836082 140924815 - MGP_AJ_P0064134 Pkn2 protein_coding protein_coding MGP_AJ_T0064135.1 MGP_AJ_G0027905.1 mouse_genomes_project 3 140842203 140925077 - Pkn2 protein_coding processed_transcript MGP_AJ_T0064136.1 MGP_AJ_G0027905.1 mouse_genomes_project 3 140842285 140845353 - Pkn2 protein_coding retained_intron MGP_AJ_T0064137.1 MGP_AJ_G0027905.1 mouse_genomes_project 3 140847030 140925147 - Pkn2 protein_coding processed_transcript MGP_AJ_T0064138.1 MGP_AJ_G0027905.1 mouse_genomes_project 3 140851804 140863761 - MGP_AJ_P0064138 Pkn2 protein_coding nonsense_mediated_decay MGP_AJ_T0064139.1 MGP_AJ_G0027905.1 mouse_genomes_project 3 140852921 140854745 - Pkn2 protein_coding retained_intron MGP_AJ_T0064140.1 MGP_AJ_G0027905.1 mouse_genomes_project 3 140853715 140871452 - MGP_AJ_P0064140 Pkn2 protein_coding protein_coding MGP_AJ_T0064141.1 MGP_AJ_G0027905.1 mouse_genomes_project 3 140863471 140871415 - Pkn2 protein_coding retained_intron MGP_AJ_T0064142.1 MGP_AJ_G0027905.1 mouse_genomes_project 3 140872392 140925140 - Pkn2 protein_coding retained_intron MGP_AJ_T0064143.1 MGP_AJ_G0027905.1 mouse_genomes_project 3 140896070 140898864 - Pkn2 protein_coding retained_intron MGP_AJ_T0062286.1 MGP_AJ_G0027518.1 mouse_genomes_project 3 92606385 92609254 - MGP_AJ_P0062286 Psmb4 protein_coding protein_coding MGP_AJ_T0062287.1 MGP_AJ_G0027518.1 mouse_genomes_project 3 92606614 92607136 - Psmb4 protein_coding retained_intron MGP_AJ_T0062288.1 MGP_AJ_G0027518.1 mouse_genomes_project 3 92607190 92609155 - Psmb4 protein_coding retained_intron MGP_AJ_T0062289.1 MGP_AJ_G0027518.1 mouse_genomes_project 3 92607209 92609038 - Psmb4 protein_coding retained_intron MGP_AJ_T0062290.1 MGP_AJ_G0027518.1 mouse_genomes_project 3 92607599 92608248 - Psmb4 protein_coding retained_intron MGP_AJ_T0001189.1 MGP_AJ_G0001115.1 mouse_genomes_project 3 48505297 48508501 + TEC TEC MGP_AJ_T0064515.1 MGP_AJ_G0027970.1 mouse_genomes_project 3 155813238 155896700 + MGP_AJ_P0064515 Ptger3 protein_coding protein_coding MGP_AJ_T0064516.1 MGP_AJ_G0027970.1 mouse_genomes_project 3 155813246 155857358 + Ptger3 protein_coding retained_intron MGP_AJ_T0064517.1 MGP_AJ_G0027970.1 mouse_genomes_project 3 155813246 155895568 + MGP_AJ_P0064517 Ptger3 protein_coding protein_coding MGP_AJ_T0062191.1 MGP_AJ_G0027487.1 mouse_genomes_project 3 90376543 90378002 - MGP_AJ_P0062191 Lce1l protein_coding protein_coding MGP_AJ_T0001243.1 MGP_AJ_G0001167.1 mouse_genomes_project 3 72177577 72179797 - TEC TEC MGP_AJ_T0061925.1 MGP_AJ_G0027404.1 mouse_genomes_project 3 86679068 86681598 + Pygo2 protein_coding processed_transcript MGP_AJ_T0061926.1 MGP_AJ_G0027404.1 mouse_genomes_project 3 86679115 86683983 + MGP_AJ_P0061926 Pygo2 protein_coding protein_coding MGP_AJ_T0061927.1 MGP_AJ_G0027404.1 mouse_genomes_project 3 86679278 86680024 + Pygo2 protein_coding processed_transcript MGP_AJ_T0061928.1 MGP_AJ_G0027404.1 mouse_genomes_project 3 86679594 86681537 + Pygo2 protein_coding processed_transcript MGP_AJ_T0061929.1 MGP_AJ_G0027404.1 mouse_genomes_project 3 86679691 86683983 + MGP_AJ_P0061929 Pygo2 protein_coding protein_coding MGP_AJ_T0061930.1 MGP_AJ_G0027404.1 mouse_genomes_project 3 86679886 86681847 + Pygo2 protein_coding processed_transcript MGP_AJ_T0001124.1 MGP_AJ_G0001050.1 mouse_genomes_project 3 24676149 24677373 + TEC TEC MGP_AJ_T0061125.1 MGP_AJ_G0027237.1 mouse_genomes_project 3 63470355 63476251 + MGP_AJ_P0061125 Ptx3 protein_coding protein_coding MGP_AJ_T0061126.1 MGP_AJ_G0027237.1 mouse_genomes_project 3 63470690 63471876 + Ptx3 protein_coding retained_intron MGP_AJ_T0063137.1 MGP_AJ_G0027710.1 mouse_genomes_project 3 105597192 105598579 - MGP_AJ_P0063137 Ubl4b protein_coding protein_coding MGP_AJ_T0101106.1 MGP_AJ_G0039072.1 mouse_genomes_project 3 11381995 11382120 - Gm23112 snoRNA snoRNA MGP_AJ_T0014238.1 MGP_AJ_G0012333.1 mouse_genomes_project 3 105380941 105381686 + processed_pseudogene processed_pseudogene MGP_AJ_T0098975.1 MGP_AJ_G0036952.1 mouse_genomes_project 3 99339236 99340312 + Gm42938 sense_intronic sense_intronic MGP_AJ_T0013917.1 MGP_AJ_G0012012.1 mouse_genomes_project 3 7202020 7202120 - processed_pseudogene processed_pseudogene MGP_AJ_T0063902.1 MGP_AJ_G0027859.1 mouse_genomes_project 3 132857470 132955480 + MGP_AJ_P0063902 Tacr3 protein_coding protein_coding MGP_AJ_T0007560.1 MGP_AJ_G0006186.1 mouse_genomes_project 3 55008521 55013094 - Gm42512 lincRNA lincRNA MGP_AJ_T0064261.1 MGP_AJ_G0027933.1 mouse_genomes_project 3 144634289 144649727 - MGP_AJ_P0064261 Rpf1 protein_coding protein_coding MGP_AJ_T0064262.1 MGP_AJ_G0027933.1 mouse_genomes_project 3 144634677 144636558 - MGP_AJ_P0064262 Rpf1 protein_coding protein_coding MGP_AJ_T0064263.1 MGP_AJ_G0027933.1 mouse_genomes_project 3 144634756 144636826 - Rpf1 protein_coding retained_intron MGP_AJ_T0064264.1 MGP_AJ_G0027933.1 mouse_genomes_project 3 144636506 144649349 - Rpf1 protein_coding processed_transcript MGP_AJ_T0064265.1 MGP_AJ_G0027933.1 mouse_genomes_project 3 144639128 144649709 - MGP_AJ_P0064265 Rpf1 protein_coding protein_coding MGP_AJ_T0010537.1 MGP_AJ_G0008659.1 mouse_genomes_project 3 95490301 95490355 - Mir7225 miRNA miRNA MGP_AJ_T0102544.1 MGP_AJ_G0040286.1 mouse_genomes_project 3 84696047 84696572 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0101171.1 MGP_AJ_G0039137.1 mouse_genomes_project 3 142652680 142652808 - Gm24406 snoRNA snoRNA MGP_AJ_T0001257.1 MGP_AJ_G0001181.1 mouse_genomes_project 3 85175338 85177606 + TEC TEC MGP_AJ_T0063523.1 MGP_AJ_G0027791.1 mouse_genomes_project 3 119799036 119810535 + MGP_AJ_P0063523 F3 protein_coding protein_coding MGP_AJ_T0063524.1 MGP_AJ_G0027791.1 mouse_genomes_project 3 119799069 119805034 + F3 protein_coding processed_transcript MGP_AJ_T0063525.1 MGP_AJ_G0027791.1 mouse_genomes_project 3 119804821 119807668 + F3 protein_coding retained_intron MGP_AJ_T0063526.1 MGP_AJ_G0027791.1 mouse_genomes_project 3 119805045 119810535 + MGP_AJ_P0063526 F3 protein_coding protein_coding MGP_AJ_T0062903.1 MGP_AJ_G0027653.1 mouse_genomes_project 3 101521650 101577572 + MGP_AJ_P0062903 Syt6 protein_coding protein_coding MGP_AJ_T0062904.1 MGP_AJ_G0027653.1 mouse_genomes_project 3 101521700 101581819 + MGP_AJ_P0062904 Syt6 protein_coding protein_coding MGP_AJ_T0062905.1 MGP_AJ_G0027653.1 mouse_genomes_project 3 101521701 101581819 + MGP_AJ_P0062905 Syt6 protein_coding nonsense_mediated_decay MGP_AJ_T0062906.1 MGP_AJ_G0027653.1 mouse_genomes_project 3 101521719 101579409 + MGP_AJ_P0062906 Syt6 protein_coding nonsense_mediated_decay MGP_AJ_T0062907.1 MGP_AJ_G0027653.1 mouse_genomes_project 3 101521797 101577553 + MGP_AJ_P0062907 Syt6 protein_coding nonsense_mediated_decay MGP_AJ_T0062908.1 MGP_AJ_G0027653.1 mouse_genomes_project 3 101522488 101533665 + MGP_AJ_P0062908 Syt6 protein_coding protein_coding MGP_AJ_T0062909.1 MGP_AJ_G0027653.1 mouse_genomes_project 3 101522549 101591655 + MGP_AJ_P0062909 Syt6 protein_coding protein_coding MGP_AJ_T0062910.1 MGP_AJ_G0027653.1 mouse_genomes_project 3 101522549 101574191 + MGP_AJ_P0062910 Syt6 protein_coding protein_coding MGP_AJ_T0062911.1 MGP_AJ_G0027653.1 mouse_genomes_project 3 101526241 101581823 + MGP_AJ_P0062911 Syt6 protein_coding unknown_likely_coding MGP_AJ_T0001113.1 MGP_AJ_G0001039.1 mouse_genomes_project 3 7433536 7433866 + TEC TEC MGP_AJ_T0102554.1 MGP_AJ_G0040296.1 mouse_genomes_project 3 90625355 90625580 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0007700.1 MGP_AJ_G0006293.1 mouse_genomes_project 3 126021397 126023501 + Gm43053 lincRNA lincRNA MGP_AJ_T0001125.1 MGP_AJ_G0001051.1 mouse_genomes_project 3 25456218 25457956 + TEC TEC MGP_AJ_T0007551.1 MGP_AJ_G0006180.1 mouse_genomes_project 3 49942430 49956148 - Gm20750 lincRNA lincRNA MGP_AJ_T0099853.1 MGP_AJ_G0037819.1 mouse_genomes_project 3 87855839 87855986 - Gm23464 snRNA snRNA MGP_AJ_T0014277.1 MGP_AJ_G0012372.1 mouse_genomes_project 3 115233342 115233985 + processed_pseudogene processed_pseudogene MGP_AJ_T0061349.1 MGP_AJ_G0027290.1 mouse_genomes_project 3 79627968 79638680 - MGP_AJ_P0061349 Npy2r protein_coding protein_coding MGP_AJ_T0061350.1 MGP_AJ_G0027290.1 mouse_genomes_project 3 79627971 79638648 - MGP_AJ_P0061350 Npy2r protein_coding protein_coding MGP_AJ_T0061351.1 MGP_AJ_G0027290.1 mouse_genomes_project 3 79629534 79638556 - MGP_AJ_P0061351 Npy2r protein_coding protein_coding MGP_AJ_T0061352.1 MGP_AJ_G0027290.1 mouse_genomes_project 3 79629534 79638556 - MGP_AJ_P0061352 Npy2r protein_coding protein_coding MGP_AJ_T0007550.1 MGP_AJ_G0006179.1 mouse_genomes_project 3 49826016 49834916 - Gm30292 lincRNA lincRNA MGP_AJ_T0001199.1 MGP_AJ_G0001124.1 mouse_genomes_project 3 48904608 48907224 - TEC TEC MGP_AJ_T0063831.1 MGP_AJ_G0027844.1 mouse_genomes_project 3 129302937 129341594 - MGP_AJ_P0063831 Hadh protein_coding protein_coding MGP_AJ_T0063832.1 MGP_AJ_G0027844.1 mouse_genomes_project 3 129314619 129341517 - Hadh protein_coding retained_intron MGP_AJ_T0063705.1 MGP_AJ_G0027820.1 mouse_genomes_project 3 125595798 125667643 + MGP_AJ_P0063705 Zgrf1 protein_coding nonsense_mediated_decay MGP_AJ_T0063706.1 MGP_AJ_G0027820.1 mouse_genomes_project 3 125595798 125667648 + MGP_AJ_P0063706 Zgrf1 protein_coding protein_coding MGP_AJ_T0063707.1 MGP_AJ_G0027820.1 mouse_genomes_project 3 125595811 125666760 + MGP_AJ_P0063707 Zgrf1 protein_coding nonsense_mediated_decay MGP_AJ_T0063708.1 MGP_AJ_G0027820.1 mouse_genomes_project 3 125595811 125667650 + MGP_AJ_P0063708 Zgrf1 protein_coding protein_coding MGP_AJ_T0063709.1 MGP_AJ_G0027820.1 mouse_genomes_project 3 125595942 125608546 + MGP_AJ_P0063709 Zgrf1 protein_coding protein_coding MGP_AJ_T0063710.1 MGP_AJ_G0027820.1 mouse_genomes_project 3 125629728 125666611 + MGP_AJ_P0063710 Zgrf1 protein_coding nonsense_mediated_decay MGP_AJ_T0063121.1 MGP_AJ_G0027706.1 mouse_genomes_project 3 105326881 105347767 + MGP_AJ_P0063121 Slc16a4 protein_coding protein_coding MGP_AJ_T0063122.1 MGP_AJ_G0027706.1 mouse_genomes_project 3 105326945 105338205 + Slc16a4 protein_coding retained_intron MGP_AJ_T0063123.1 MGP_AJ_G0027706.1 mouse_genomes_project 3 105326966 105343369 + MGP_AJ_P0063123 Slc16a4 protein_coding protein_coding MGP_AJ_T0001255.1 MGP_AJ_G0001179.1 mouse_genomes_project 3 82323511 82324749 - TEC TEC MGP_AJ_T0014075.1 MGP_AJ_G0012170.1 mouse_genomes_project 3 58059495 58059874 + processed_pseudogene processed_pseudogene MGP_AJ_T0062450.1 MGP_AJ_G0027544.1 mouse_genomes_project 3 93247451 93257436 + MGP_AJ_P0062450 Ctsk protein_coding protein_coding MGP_AJ_T0062092.1 MGP_AJ_G0027430.1 mouse_genomes_project 3 87779162 87781564 - Snapin protein_coding retained_intron MGP_AJ_T0062093.1 MGP_AJ_G0027430.1 mouse_genomes_project 3 87779170 87782169 - MGP_AJ_P0062093 Snapin protein_coding protein_coding MGP_AJ_T0062094.1 MGP_AJ_G0027430.1 mouse_genomes_project 3 87779506 87782129 - MGP_AJ_P0062094 Snapin protein_coding nonsense_mediated_decay MGP_AJ_T0062095.1 MGP_AJ_G0027430.1 mouse_genomes_project 3 87779509 87782160 - MGP_AJ_P0062095 Snapin protein_coding nonsense_mediated_decay MGP_AJ_T0062096.1 MGP_AJ_G0027430.1 mouse_genomes_project 3 87780135 87781928 - Snapin protein_coding retained_intron MGP_AJ_T0062794.1 MGP_AJ_G0027632.1 mouse_genomes_project 3 98965624 99035950 - MGP_AJ_P0062794 Ptgfrn protein_coding protein_coding MGP_AJ_T0062795.1 MGP_AJ_G0027632.1 mouse_genomes_project 3 98987387 98999803 - Ptgfrn protein_coding processed_transcript MGP_AJ_T0062796.1 MGP_AJ_G0027632.1 mouse_genomes_project 3 99000289 99005075 - Ptgfrn protein_coding retained_intron MGP_AJ_T0099838.1 MGP_AJ_G0037804.1 mouse_genomes_project 3 76306110 76306214 + Gm24150 snRNA snRNA MGP_AJ_T0062157.1 MGP_AJ_G0027457.1 mouse_genomes_project 3 89875413 89876720 + MGP_AJ_P0062157 Sprr2e protein_coding protein_coding MGP_AJ_T0098667.1 MGP_AJ_G0036651.1 mouse_genomes_project 3 22655898 22656006 + Gm22832 rRNA rRNA MGP_AJ_T0007728.1 MGP_AJ_G0006318.1 mouse_genomes_project 3 135738213 135746455 + Gm42610 lincRNA lincRNA MGP_AJ_T0014089.1 MGP_AJ_G0012184.1 mouse_genomes_project 3 63237214 63239927 - processed_pseudogene processed_pseudogene MGP_AJ_T0102556.1 MGP_AJ_G0040298.1 mouse_genomes_project 3 91547490 91547896 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0064346.1 MGP_AJ_G0027947.1 mouse_genomes_project 3 150403892 150430513 + MGP_AJ_P0064346 Fubp1 protein_coding protein_coding MGP_AJ_T0064347.1 MGP_AJ_G0027947.1 mouse_genomes_project 3 150403943 150413963 + MGP_AJ_P0064347 Fubp1 protein_coding protein_coding MGP_AJ_T0064348.1 MGP_AJ_G0027947.1 mouse_genomes_project 3 150403952 150426442 + MGP_AJ_P0064348 Fubp1 protein_coding protein_coding MGP_AJ_T0064349.1 MGP_AJ_G0027947.1 mouse_genomes_project 3 150403962 150418330 + MGP_AJ_P0064349 Fubp1 protein_coding protein_coding MGP_AJ_T0064350.1 MGP_AJ_G0027947.1 mouse_genomes_project 3 150403968 150426441 + MGP_AJ_P0064350 Fubp1 protein_coding protein_coding MGP_AJ_T0064351.1 MGP_AJ_G0027947.1 mouse_genomes_project 3 150403984 150413179 + MGP_AJ_P0064351 Fubp1 protein_coding nonsense_mediated_decay MGP_AJ_T0064352.1 MGP_AJ_G0027947.1 mouse_genomes_project 3 150403989 150429455 + MGP_AJ_P0064352 Fubp1 protein_coding nonsense_mediated_decay MGP_AJ_T0064353.1 MGP_AJ_G0027947.1 mouse_genomes_project 3 150403989 150426441 + MGP_AJ_P0064353 Fubp1 protein_coding protein_coding MGP_AJ_T0064354.1 MGP_AJ_G0027947.1 mouse_genomes_project 3 150403991 150430513 + MGP_AJ_P0064354 Fubp1 protein_coding nonsense_mediated_decay MGP_AJ_T0064355.1 MGP_AJ_G0027947.1 mouse_genomes_project 3 150410894 150411968 + Fubp1 protein_coding retained_intron MGP_AJ_T0064356.1 MGP_AJ_G0027947.1 mouse_genomes_project 3 150414826 150417598 + MGP_AJ_P0064356 Fubp1 protein_coding protein_coding MGP_AJ_T0064357.1 MGP_AJ_G0027947.1 mouse_genomes_project 3 150415348 150416444 + Fubp1 protein_coding retained_intron MGP_AJ_T0064358.1 MGP_AJ_G0027947.1 mouse_genomes_project 3 150416761 150426442 + MGP_AJ_P0064358 Fubp1 protein_coding protein_coding MGP_AJ_T0064359.1 MGP_AJ_G0027947.1 mouse_genomes_project 3 150416774 150426459 + MGP_AJ_P0064359 Fubp1 protein_coding protein_coding MGP_AJ_T0064360.1 MGP_AJ_G0027947.1 mouse_genomes_project 3 150416784 150429521 + MGP_AJ_P0064360 Fubp1 protein_coding protein_coding MGP_AJ_T0064361.1 MGP_AJ_G0027947.1 mouse_genomes_project 3 150418191 150429089 + Fubp1 protein_coding retained_intron MGP_AJ_T0064362.1 MGP_AJ_G0027947.1 mouse_genomes_project 3 150419334 150421815 + Fubp1 protein_coding retained_intron MGP_AJ_T0064363.1 MGP_AJ_G0027947.1 mouse_genomes_project 3 150420872 150424980 + Fubp1 protein_coding retained_intron MGP_AJ_T0064364.1 MGP_AJ_G0027947.1 mouse_genomes_project 3 150421408 150426178 + Fubp1 protein_coding retained_intron MGP_AJ_T0004253.1 MGP_AJ_G0003738.1 mouse_genomes_project 3 61126758 61132106 + Gm26850 antisense antisense MGP_AJ_T0004254.1 MGP_AJ_G0003738.1 mouse_genomes_project 3 61126760 61128576 + Gm26850 antisense antisense MGP_AJ_T0060103.1 MGP_AJ_G0027033.1 mouse_genomes_project 3 7498949 7527092 + MGP_AJ_P0060103 Chmp4c protein_coding protein_coding MGP_AJ_T0060104.1 MGP_AJ_G0027033.1 mouse_genomes_project 3 7499000 7560504 + MGP_AJ_P0060104 Chmp4c protein_coding nonsense_mediated_decay MGP_AJ_T0101783.1 MGP_AJ_G0039701.1 mouse_genomes_project 3 62748863 62770023 - transcribed_processed_pseudogene processed_transcript MGP_AJ_T0101784.1 MGP_AJ_G0039701.1 mouse_genomes_project 3 62750297 62750878 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0101785.1 MGP_AJ_G0039701.1 mouse_genomes_project 3 62757032 62771210 - transcribed_processed_pseudogene processed_transcript MGP_AJ_T0101786.1 MGP_AJ_G0039701.1 mouse_genomes_project 3 62769327 62771052 - transcribed_processed_pseudogene processed_transcript MGP_AJ_T0101787.1 MGP_AJ_G0039701.1 mouse_genomes_project 3 62769361 62771218 - transcribed_processed_pseudogene processed_transcript MGP_AJ_T0004327.1 MGP_AJ_G0003788.1 mouse_genomes_project 3 102351577 102364194 + Gm43257 antisense antisense MGP_AJ_T0001356.1 MGP_AJ_G0001279.1 mouse_genomes_project 3 130807775 130810990 + TEC TEC MGP_AJ_T0062970.1 MGP_AJ_G0027666.1 mouse_genomes_project 3 102338754 102408005 - MGP_AJ_P0062970 Lrig2 protein_coding protein_coding MGP_AJ_T0062971.1 MGP_AJ_G0027666.1 mouse_genomes_project 3 102400489 102458968 - MGP_AJ_P0062971 Lrig2 protein_coding protein_coding MGP_AJ_T0062972.1 MGP_AJ_G0027666.1 mouse_genomes_project 3 102400490 102458956 - MGP_AJ_P0062972 Lrig2 protein_coding protein_coding MGP_AJ_T0062973.1 MGP_AJ_G0027666.1 mouse_genomes_project 3 102403065 102427218 - Lrig2 protein_coding retained_intron MGP_AJ_T0062974.1 MGP_AJ_G0027666.1 mouse_genomes_project 3 102403623 102458984 - MGP_AJ_P0062974 Lrig2 protein_coding protein_coding MGP_AJ_T0062975.1 MGP_AJ_G0027666.1 mouse_genomes_project 3 102403839 102459046 - Lrig2 protein_coding retained_intron MGP_AJ_T0062976.1 MGP_AJ_G0027666.1 mouse_genomes_project 3 102405700 102409303 - Lrig2 protein_coding retained_intron MGP_AJ_T0062977.1 MGP_AJ_G0027666.1 mouse_genomes_project 3 102428619 102458789 - Lrig2 protein_coding retained_intron MGP_AJ_T0062978.1 MGP_AJ_G0027666.1 mouse_genomes_project 3 102437778 102438816 - Lrig2 protein_coding retained_intron MGP_AJ_T0001344.1 MGP_AJ_G0001267.1 mouse_genomes_project 3 127442518 127445966 + TEC TEC MGP_AJ_T0098797.1 MGP_AJ_G0036781.1 mouse_genomes_project 3 13256118 13256447 - Gm25863 ribozyme ribozyme MGP_AJ_T0011536.1 MGP_AJ_G0009658.1 mouse_genomes_project 3 31788764 31789036 + Mir1897 misc_RNA misc_RNA MGP_AJ_T0061385.1 MGP_AJ_G0027303.1 mouse_genomes_project 3 81205190 81266732 - MGP_AJ_P0061385 Mnd1 protein_coding protein_coding MGP_AJ_T0062670.1 MGP_AJ_G0027598.1 mouse_genomes_project 3 94672518 94852946 + MGP_AJ_P0062670 Gja5 protein_coding protein_coding MGP_AJ_T0062672.1 MGP_AJ_G0027598.1 mouse_genomes_project 3 94803805 94822233 + MGP_AJ_P0062672 Gja5 protein_coding protein_coding MGP_AJ_T0062673.1 MGP_AJ_G0027598.1 mouse_genomes_project 3 94803805 94824996 + MGP_AJ_P0062673 Gja5 protein_coding protein_coding MGP_AJ_T0014068.1 MGP_AJ_G0012163.1 mouse_genomes_project 3 56806265 56806379 - processed_pseudogene processed_pseudogene MGP_AJ_T0007528.1 MGP_AJ_G0006165.1 mouse_genomes_project 3 38394462 38409536 + Gm30852 lincRNA lincRNA MGP_AJ_T0007529.1 MGP_AJ_G0006165.1 mouse_genomes_project 3 38408020 38433556 + Gm30852 lincRNA lincRNA MGP_AJ_T0014151.1 MGP_AJ_G0012246.1 mouse_genomes_project 3 83034895 83035370 + processed_pseudogene processed_pseudogene MGP_AJ_T0007656.1 MGP_AJ_G0006260.1 mouse_genomes_project 3 102603792 102606593 - Gm29561 lincRNA lincRNA MGP_AJ_T0013978.1 MGP_AJ_G0012073.1 mouse_genomes_project 3 29444701 29445473 + processed_pseudogene processed_pseudogene MGP_AJ_T0099823.1 MGP_AJ_G0037789.1 mouse_genomes_project 3 50870294 50870397 + Gm24851 snRNA snRNA MGP_AJ_T0014230.1 MGP_AJ_G0012325.1 mouse_genomes_project 3 102074331 102075169 + processed_pseudogene processed_pseudogene MGP_AJ_T0014361.1 MGP_AJ_G0012456.1 mouse_genomes_project 3 142791566 142792133 + processed_pseudogene processed_pseudogene MGP_AJ_T0014033.1 MGP_AJ_G0012128.1 mouse_genomes_project 3 46565834 46566396 + processed_pseudogene processed_pseudogene MGP_AJ_T0014274.1 MGP_AJ_G0012369.1 mouse_genomes_project 3 114869392 114869782 + processed_pseudogene processed_pseudogene MGP_AJ_T0064144.1 MGP_AJ_G0027906.1 mouse_genomes_project 3 142250842 142264697 - MGP_AJ_P0064144 Lmo4 protein_coding protein_coding MGP_AJ_T0064145.1 MGP_AJ_G0027906.1 mouse_genomes_project 3 142250842 142267496 - MGP_AJ_P0064145 Lmo4 protein_coding protein_coding MGP_AJ_T0064146.1 MGP_AJ_G0027906.1 mouse_genomes_project 3 142250944 142264633 - MGP_AJ_P0064146 Lmo4 protein_coding protein_coding MGP_AJ_T0064147.1 MGP_AJ_G0027906.1 mouse_genomes_project 3 142250995 142267496 - MGP_AJ_P0064147 Lmo4 protein_coding protein_coding MGP_AJ_T0064148.1 MGP_AJ_G0027906.1 mouse_genomes_project 3 142251374 142257131 - Lmo4 protein_coding retained_intron MGP_AJ_T0064149.1 MGP_AJ_G0027906.1 mouse_genomes_project 3 142256300 142265264 - MGP_AJ_P0064149 Lmo4 protein_coding protein_coding MGP_AJ_T0064150.1 MGP_AJ_G0027906.1 mouse_genomes_project 3 142263083 142267456 - Lmo4 protein_coding retained_intron MGP_AJ_T0064151.1 MGP_AJ_G0027906.1 mouse_genomes_project 3 142263923 142264601 - Lmo4 protein_coding retained_intron MGP_AJ_T0099000.1 MGP_AJ_G0036977.1 mouse_genomes_project 3 102446591 102448767 - A530041M06Rik sense_intronic sense_intronic MGP_AJ_T0014236.1 MGP_AJ_G0012331.1 mouse_genomes_project 3 103999165 103999633 - processed_pseudogene processed_pseudogene MGP_AJ_T0014073.1 MGP_AJ_G0012168.1 mouse_genomes_project 3 57931198 57931356 - processed_pseudogene processed_pseudogene MGP_AJ_T0060081.1 MGP_AJ_G0027025.1 mouse_genomes_project 3 7304542 7324217 - MGP_AJ_P0060081 Gm37389 protein_coding nonsense_mediated_decay MGP_AJ_T0004331.1 MGP_AJ_G0003791.1 mouse_genomes_project 3 103957055 103974192 + Gm42722 antisense antisense MGP_AJ_T0007520.1 MGP_AJ_G0006160.1 mouse_genomes_project 3 35570923 35589493 - Gm43536 lincRNA lincRNA MGP_AJ_T0007521.1 MGP_AJ_G0006160.1 mouse_genomes_project 3 35573511 35589495 - Gm43536 lincRNA lincRNA MGP_AJ_T0007522.1 MGP_AJ_G0006160.1 mouse_genomes_project 3 35575166 35589735 - Gm43536 lincRNA lincRNA MGP_AJ_T0001394.1 MGP_AJ_G0001317.1 mouse_genomes_project 3 155245786 155248961 + TEC TEC MGP_AJ_T0099833.1 MGP_AJ_G0037799.1 mouse_genomes_project 3 62767541 62767634 + Gm22279 snRNA snRNA MGP_AJ_T0007499.1 MGP_AJ_G0006141.1 mouse_genomes_project 3 31572348 31574016 + Gm43208 lincRNA lincRNA MGP_AJ_T0004306.1 MGP_AJ_G0003774.1 mouse_genomes_project 3 94010438 94012904 - Gm20632 antisense antisense MGP_AJ_T0001132.1 MGP_AJ_G0001058.1 mouse_genomes_project 3 27616330 27617198 + TEC TEC MGP_AJ_T0001292.1 MGP_AJ_G0001216.1 mouse_genomes_project 3 114161141 114162165 + TEC TEC MGP_AJ_T0062692.1 MGP_AJ_G0027603.1 mouse_genomes_project 3 95358849 95408956 - MGP_AJ_P0062692 Chd1l protein_coding protein_coding MGP_AJ_T0062693.1 MGP_AJ_G0027603.1 mouse_genomes_project 3 95360760 95365193 - Chd1l protein_coding retained_intron MGP_AJ_T0062694.1 MGP_AJ_G0027603.1 mouse_genomes_project 3 95369115 95408945 - Chd1l protein_coding retained_intron MGP_AJ_T0004263.1 MGP_AJ_G0003746.1 mouse_genomes_project 3 78133636 78136670 - Gm16000 antisense antisense MGP_AJ_T0014271.1 MGP_AJ_G0012366.1 mouse_genomes_project 3 113953140 113954305 + processed_pseudogene processed_pseudogene MGP_AJ_T0061206.1 MGP_AJ_G0027256.1 mouse_genomes_project 3 66407272 66408472 + MGP_AJ_P0061206 Arl14 protein_coding protein_coding MGP_AJ_T0099865.1 MGP_AJ_G0037831.1 mouse_genomes_project 3 102545647 102545729 - Gm26091 snRNA snRNA MGP_AJ_T0061199.1 MGP_AJ_G0027254.1 mouse_genomes_project 3 66221024 66233017 - MGP_AJ_P0061199 Trim59 protein_coding protein_coding MGP_AJ_T0061200.1 MGP_AJ_G0027254.1 mouse_genomes_project 3 66222391 66232977 - MGP_AJ_P0061200 Trim59 protein_coding protein_coding MGP_AJ_T0061201.1 MGP_AJ_G0027254.1 mouse_genomes_project 3 66231797 66232977 - Trim59 protein_coding retained_intron MGP_AJ_T0061202.1 MGP_AJ_G0027254.1 mouse_genomes_project 3 66232023 66232985 - Trim59 protein_coding processed_transcript MGP_AJ_T0001400.1 MGP_AJ_G0001323.1 mouse_genomes_project 3 156430699 156432059 + TEC TEC MGP_AJ_T0001200.1 MGP_AJ_G0001125.1 mouse_genomes_project 3 48927537 48929425 - TEC TEC MGP_AJ_T0001201.1 MGP_AJ_G0001125.1 mouse_genomes_project 3 48927538 48929425 - TEC pseudogene MGP_AJ_T0001397.1 MGP_AJ_G0001320.1 mouse_genomes_project 3 156143287 156145518 - TEC TEC MGP_AJ_T0014341.1 MGP_AJ_G0012436.1 mouse_genomes_project 3 136544064 136544433 - processed_pseudogene processed_pseudogene MGP_AJ_T0014293.1 MGP_AJ_G0012388.1 mouse_genomes_project 3 121148311 121148735 - processed_pseudogene processed_pseudogene MGP_AJ_T0063163.1 MGP_AJ_G0027717.1 mouse_genomes_project 3 105950440 105953306 + MGP_AJ_P0063163 Gstm5 protein_coding protein_coding MGP_AJ_T0063164.1 MGP_AJ_G0027717.1 mouse_genomes_project 3 105950455 105953195 + MGP_AJ_P0063164 Gstm5 protein_coding nonsense_mediated_decay MGP_AJ_T0063165.1 MGP_AJ_G0027717.1 mouse_genomes_project 3 105950465 105953306 + MGP_AJ_P0063165 Gstm5 protein_coding nonsense_mediated_decay MGP_AJ_T0063166.1 MGP_AJ_G0027717.1 mouse_genomes_project 3 105950560 105952965 + MGP_AJ_P0063166 Gstm5 protein_coding protein_coding MGP_AJ_T0063167.1 MGP_AJ_G0027717.1 mouse_genomes_project 3 105950573 105953169 + MGP_AJ_P0063167 Gstm5 protein_coding protein_coding MGP_AJ_T0063168.1 MGP_AJ_G0027717.1 mouse_genomes_project 3 105950866 105953298 + MGP_AJ_P0063168 Gstm5 protein_coding protein_coding MGP_AJ_T0098444.1 MGP_AJ_G0036428.1 mouse_genomes_project 3 86600042 86601312 + pseudogene pseudogene MGP_AJ_T0062209.1 MGP_AJ_G0027498.1 mouse_genomes_project 3 90971931 90977747 + MGP_AJ_P0062209 Rptn protein_coding protein_coding MGP_AJ_T0001281.1 MGP_AJ_G0001205.1 mouse_genomes_project 3 104513991 104516575 + TEC TEC MGP_AJ_T0013982.1 MGP_AJ_G0012077.1 mouse_genomes_project 3 30897617 30900563 + processed_pseudogene processed_pseudogene MGP_AJ_T0099891.1 MGP_AJ_G0037857.1 mouse_genomes_project 3 155656596 155656703 - Gm23379 snRNA snRNA MGP_AJ_T0063542.1 MGP_AJ_G0027794.1 mouse_genomes_project 3 120130961 120268692 + MGP_AJ_P0063542 protein_coding protein_coding MGP_AJ_T0063543.1 MGP_AJ_G0027794.1 mouse_genomes_project 3 120134044 120186130 + protein_coding processed_transcript MGP_AJ_T0063544.1 MGP_AJ_G0027794.1 mouse_genomes_project 3 120162565 120176036 + protein_coding processed_transcript MGP_AJ_T0063545.1 MGP_AJ_G0027794.1 mouse_genomes_project 3 120208606 120217235 + protein_coding retained_intron MGP_AJ_T0063546.1 MGP_AJ_G0027794.1 mouse_genomes_project 3 120210320 120215045 + protein_coding retained_intron MGP_AJ_T0063547.1 MGP_AJ_G0027794.1 mouse_genomes_project 3 120220579 120268694 + MGP_AJ_P0063547 protein_coding protein_coding MGP_AJ_T0063548.1 MGP_AJ_G0027794.1 mouse_genomes_project 3 120251145 120253187 + protein_coding retained_intron MGP_AJ_T0063549.1 MGP_AJ_G0027794.1 mouse_genomes_project 3 120252685 120258982 + protein_coding retained_intron MGP_AJ_T0063550.1 MGP_AJ_G0027794.1 mouse_genomes_project 3 120258621 120259649 + protein_coding processed_transcript MGP_AJ_T0063551.1 MGP_AJ_G0027794.1 mouse_genomes_project 3 120261642 120268756 + protein_coding retained_intron MGP_AJ_T0098986.1 MGP_AJ_G0036963.1 mouse_genomes_project 3 101812384 101813644 + Gm15472 sense_intronic sense_intronic MGP_AJ_T0004232.1 MGP_AJ_G0003720.1 mouse_genomes_project 3 36008490 36022092 - C230034O21Rik antisense antisense MGP_AJ_T0099884.1 MGP_AJ_G0037850.1 mouse_genomes_project 3 144250646 144250799 - Gm25627 snRNA snRNA MGP_AJ_T0013899.1 MGP_AJ_G0011994.1 mouse_genomes_project 3 3266125 3266541 - processed_pseudogene processed_pseudogene MGP_AJ_T0010534.1 MGP_AJ_G0008656.1 mouse_genomes_project 3 92880155 92880282 - Mir8099-1 miRNA miRNA MGP_AJ_T0013951.1 MGP_AJ_G0012046.1 mouse_genomes_project 3 16711683 16712431 + processed_pseudogene processed_pseudogene MGP_AJ_T0001342.1 MGP_AJ_G0001265.1 mouse_genomes_project 3 127289746 127292326 - TEC TEC MGP_AJ_T0001379.1 MGP_AJ_G0001302.1 mouse_genomes_project 3 150444098 150446865 - TEC TEC MGP_AJ_T0007506.1 MGP_AJ_G0006147.1 mouse_genomes_project 3 31923245 31933068 + Gm38509 lincRNA lincRNA MGP_AJ_T0063798.1 MGP_AJ_G0027838.1 mouse_genomes_project 3 128203949 128258481 + Col25a1 protein_coding processed_transcript MGP_AJ_T0063799.1 MGP_AJ_G0027838.1 mouse_genomes_project 3 128256489 128624296 + Col25a1 protein_coding retained_intron MGP_AJ_T0063800.1 MGP_AJ_G0027838.1 mouse_genomes_project 3 128256489 128668405 + MGP_AJ_P0063800 Col25a1 protein_coding protein_coding MGP_AJ_T0063801.1 MGP_AJ_G0027838.1 mouse_genomes_project 3 128256489 128673150 + MGP_AJ_P0063801 Col25a1 protein_coding protein_coding MGP_AJ_T0063802.1 MGP_AJ_G0027838.1 mouse_genomes_project 3 128256489 128669594 + MGP_AJ_P0063802 Col25a1 protein_coding nonsense_mediated_decay MGP_AJ_T0063803.1 MGP_AJ_G0027838.1 mouse_genomes_project 3 128257082 128673160 + MGP_AJ_P0063803 Col25a1 protein_coding unknown_likely_coding MGP_AJ_T0063804.1 MGP_AJ_G0027838.1 mouse_genomes_project 3 128554907 128557630 + Col25a1 protein_coding retained_intron MGP_AJ_T0063789.1 MGP_AJ_G0027837.1 mouse_genomes_project 3 128055169 128131661 - MGP_AJ_P0063789 Sec24b protein_coding protein_coding MGP_AJ_T0063790.1 MGP_AJ_G0027837.1 mouse_genomes_project 3 128055853 128056931 - Sec24b protein_coding retained_intron MGP_AJ_T0063791.1 MGP_AJ_G0027837.1 mouse_genomes_project 3 128056022 128056693 - Sec24b protein_coding processed_transcript MGP_AJ_T0063792.1 MGP_AJ_G0027837.1 mouse_genomes_project 3 128060979 128062720 - Sec24b protein_coding retained_intron MGP_AJ_T0063793.1 MGP_AJ_G0027837.1 mouse_genomes_project 3 128062634 128113935 - MGP_AJ_P0063793 Sec24b protein_coding protein_coding MGP_AJ_T0063794.1 MGP_AJ_G0027837.1 mouse_genomes_project 3 128079599 128113905 - Sec24b protein_coding retained_intron MGP_AJ_T0063795.1 MGP_AJ_G0027837.1 mouse_genomes_project 3 128079625 128114211 - MGP_AJ_P0063795 Sec24b protein_coding protein_coding MGP_AJ_T0063796.1 MGP_AJ_G0027837.1 mouse_genomes_project 3 128081999 128103082 - Sec24b protein_coding retained_intron MGP_AJ_T0063797.1 MGP_AJ_G0027837.1 mouse_genomes_project 3 128114327 128132307 - Sec24b protein_coding processed_transcript MGP_AJ_T0061016.1 MGP_AJ_G0027214.1 mouse_genomes_project 3 57662167 57792882 + MGP_AJ_P0061016 Mbnl1 protein_coding protein_coding MGP_AJ_T0061017.1 MGP_AJ_G0027214.1 mouse_genomes_project 3 57662379 57801012 + MGP_AJ_P0061017 Mbnl1 protein_coding protein_coding MGP_AJ_T0061018.1 MGP_AJ_G0027214.1 mouse_genomes_project 3 57662405 57665132 + Mbnl1 protein_coding retained_intron MGP_AJ_T0061019.1 MGP_AJ_G0027214.1 mouse_genomes_project 3 57662411 57818627 + MGP_AJ_P0061019 Mbnl1 protein_coding protein_coding MGP_AJ_T0061020.1 MGP_AJ_G0027214.1 mouse_genomes_project 3 57662414 57792867 + MGP_AJ_P0061020 Mbnl1 protein_coding protein_coding MGP_AJ_T0061021.1 MGP_AJ_G0027214.1 mouse_genomes_project 3 57685007 57743941 + Mbnl1 protein_coding processed_transcript MGP_AJ_T0061022.1 MGP_AJ_G0027214.1 mouse_genomes_project 3 57685292 57795218 + Mbnl1 protein_coding retained_intron MGP_AJ_T0061023.1 MGP_AJ_G0027214.1 mouse_genomes_project 3 57685309 57824693 + Mbnl1 protein_coding processed_transcript MGP_AJ_T0061024.1 MGP_AJ_G0027214.1 mouse_genomes_project 3 57685337 57743919 + Mbnl1 protein_coding processed_transcript MGP_AJ_T0061025.1 MGP_AJ_G0027214.1 mouse_genomes_project 3 57685337 57716509 + Mbnl1 protein_coding retained_intron MGP_AJ_T0061026.1 MGP_AJ_G0027214.1 mouse_genomes_project 3 57685350 57826884 + MGP_AJ_P0061026 Mbnl1 protein_coding protein_coding MGP_AJ_T0061027.1 MGP_AJ_G0027214.1 mouse_genomes_project 3 57713026 57713988 + Mbnl1 protein_coding processed_transcript MGP_AJ_T0061028.1 MGP_AJ_G0027214.1 mouse_genomes_project 3 57713295 57826884 + MGP_AJ_P0061028 Mbnl1 protein_coding protein_coding MGP_AJ_T0061029.1 MGP_AJ_G0027214.1 mouse_genomes_project 3 57713927 57826899 + MGP_AJ_P0061029 Mbnl1 protein_coding protein_coding MGP_AJ_T0061030.1 MGP_AJ_G0027214.1 mouse_genomes_project 3 57713927 57826334 + MGP_AJ_P0061030 Mbnl1 protein_coding protein_coding MGP_AJ_T0061031.1 MGP_AJ_G0027214.1 mouse_genomes_project 3 57714453 57816216 + Mbnl1 protein_coding retained_intron MGP_AJ_T0061032.1 MGP_AJ_G0027214.1 mouse_genomes_project 3 57714517 57822343 + Mbnl1 protein_coding processed_transcript MGP_AJ_T0061033.1 MGP_AJ_G0027214.1 mouse_genomes_project 3 57792758 57810571 + MGP_AJ_P0061033 Mbnl1 protein_coding protein_coding MGP_AJ_T0061034.1 MGP_AJ_G0027214.1 mouse_genomes_project 3 57792828 57823958 + MGP_AJ_P0061034 Mbnl1 protein_coding protein_coding MGP_AJ_T0061035.1 MGP_AJ_G0027214.1 mouse_genomes_project 3 57800655 57812941 + Mbnl1 protein_coding retained_intron MGP_AJ_T0061036.1 MGP_AJ_G0027214.1 mouse_genomes_project 3 57820446 57823674 + Mbnl1 protein_coding retained_intron MGP_AJ_T0099844.1 MGP_AJ_G0037810.1 mouse_genomes_project 3 83483286 83483455 + Gm23850 snRNA snRNA MGP_AJ_T0010525.1 MGP_AJ_G0008647.1 mouse_genomes_project 3 85710476 85710558 - Mir1905 miRNA miRNA MGP_AJ_T0063897.1 MGP_AJ_G0027858.1 mouse_genomes_project 3 132243452 132266652 + Cxxc4 protein_coding processed_transcript MGP_AJ_T0063898.1 MGP_AJ_G0027858.1 mouse_genomes_project 3 132243459 132269193 + MGP_AJ_P0063898 Cxxc4 protein_coding protein_coding MGP_AJ_T0063899.1 MGP_AJ_G0027858.1 mouse_genomes_project 3 132243463 132245354 + Cxxc4 protein_coding retained_intron MGP_AJ_T0063900.1 MGP_AJ_G0027858.1 mouse_genomes_project 3 132243788 132265263 + MGP_AJ_P0063900 Cxxc4 protein_coding protein_coding MGP_AJ_T0063901.1 MGP_AJ_G0027858.1 mouse_genomes_project 3 132247558 132253886 + Cxxc4 protein_coding retained_intron MGP_AJ_T0060176.1 MGP_AJ_G0027057.1 mouse_genomes_project 3 17082180 17118417 + MGP_AJ_P0060176 Cp protein_coding protein_coding MGP_AJ_T0060177.1 MGP_AJ_G0027057.1 mouse_genomes_project 3 17082180 17135315 + MGP_AJ_P0060177 Cp protein_coding protein_coding MGP_AJ_T0060178.1 MGP_AJ_G0027057.1 mouse_genomes_project 3 17082187 17094628 + Cp protein_coding retained_intron MGP_AJ_T0060179.1 MGP_AJ_G0027057.1 mouse_genomes_project 3 17082195 17136846 + MGP_AJ_P0060179 Cp protein_coding protein_coding MGP_AJ_T0060180.1 MGP_AJ_G0027057.1 mouse_genomes_project 3 17082237 17135315 + MGP_AJ_P0060180 Cp protein_coding protein_coding MGP_AJ_T0060181.1 MGP_AJ_G0027057.1 mouse_genomes_project 3 17082345 17094296 + Cp protein_coding retained_intron MGP_AJ_T0060182.1 MGP_AJ_G0027057.1 mouse_genomes_project 3 17082410 17117804 + MGP_AJ_P0060182 Cp protein_coding protein_coding MGP_AJ_T0060183.1 MGP_AJ_G0027057.1 mouse_genomes_project 3 17095132 17114340 + Cp protein_coding retained_intron MGP_AJ_T0060184.1 MGP_AJ_G0027057.1 mouse_genomes_project 3 17096175 17100344 + Cp protein_coding retained_intron MGP_AJ_T0060185.1 MGP_AJ_G0027057.1 mouse_genomes_project 3 17100050 17106016 + Cp protein_coding retained_intron MGP_AJ_T0060186.1 MGP_AJ_G0027057.1 mouse_genomes_project 3 17105902 17112671 + MGP_AJ_P0060186 Cp protein_coding nonsense_mediated_decay MGP_AJ_T0060187.1 MGP_AJ_G0027057.1 mouse_genomes_project 3 17106702 17108762 + Cp protein_coding retained_intron MGP_AJ_T0060188.1 MGP_AJ_G0027057.1 mouse_genomes_project 3 17107277 17111178 + MGP_AJ_P0060188 Cp protein_coding protein_coding MGP_AJ_T0060189.1 MGP_AJ_G0027057.1 mouse_genomes_project 3 17110886 17117861 + MGP_AJ_P0060189 Cp protein_coding protein_coding MGP_AJ_T0060190.1 MGP_AJ_G0027057.1 mouse_genomes_project 3 17112819 17114902 + Cp protein_coding retained_intron MGP_AJ_T0060191.1 MGP_AJ_G0027057.1 mouse_genomes_project 3 17114426 17134064 + MGP_AJ_P0060191 Cp protein_coding protein_coding MGP_AJ_T0011537.1 MGP_AJ_G0009659.1 mouse_genomes_project 3 31803626 31803734 + Gm27611 misc_RNA misc_RNA MGP_AJ_T0014126.1 MGP_AJ_G0012221.1 mouse_genomes_project 3 72549591 72550893 + processed_pseudogene processed_pseudogene MGP_AJ_T0013981.1 MGP_AJ_G0012076.1 mouse_genomes_project 3 30857083 30857441 - processed_pseudogene processed_pseudogene MGP_AJ_T0060941.1 MGP_AJ_G0027192.1 mouse_genomes_project 3 54787474 54890933 + MGP_AJ_P0060941 Rnf13 protein_coding protein_coding MGP_AJ_T0060942.1 MGP_AJ_G0027192.1 mouse_genomes_project 3 54787475 54826828 + MGP_AJ_P0060942 Rnf13 protein_coding protein_coding MGP_AJ_T0060943.1 MGP_AJ_G0027192.1 mouse_genomes_project 3 54787487 54866725 + Rnf13 protein_coding processed_transcript MGP_AJ_T0060944.1 MGP_AJ_G0027192.1 mouse_genomes_project 3 54787494 54889587 + Rnf13 protein_coding processed_transcript MGP_AJ_T0060945.1 MGP_AJ_G0027192.1 mouse_genomes_project 3 54787494 54890935 + MGP_AJ_P0060945 Rnf13 protein_coding protein_coding MGP_AJ_T0060946.1 MGP_AJ_G0027192.1 mouse_genomes_project 3 54787497 54881997 + MGP_AJ_P0060946 Rnf13 protein_coding protein_coding MGP_AJ_T0060947.1 MGP_AJ_G0027192.1 mouse_genomes_project 3 54787525 54890821 + MGP_AJ_P0060947 Rnf13 protein_coding nonsense_mediated_decay MGP_AJ_T0060948.1 MGP_AJ_G0027192.1 mouse_genomes_project 3 54787532 54816379 + MGP_AJ_P0060948 Rnf13 protein_coding protein_coding MGP_AJ_T0060949.1 MGP_AJ_G0027192.1 mouse_genomes_project 3 54787532 54857210 + MGP_AJ_P0060949 Rnf13 protein_coding protein_coding MGP_AJ_T0060950.1 MGP_AJ_G0027192.1 mouse_genomes_project 3 54787532 54888931 + MGP_AJ_P0060950 Rnf13 protein_coding protein_coding MGP_AJ_T0060951.1 MGP_AJ_G0027192.1 mouse_genomes_project 3 54855505 54859376 + Rnf13 protein_coding retained_intron MGP_AJ_T0099828.1 MGP_AJ_G0037794.1 mouse_genomes_project 3 56036669 56036771 + Gm22491 snRNA snRNA MGP_AJ_T0102005.1 MGP_AJ_G0039817.1 mouse_genomes_project 3 55853545 55857169 - transcribed_unprocessed_pseudogene processed_transcript MGP_AJ_T0102006.1 MGP_AJ_G0039817.1 mouse_genomes_project 3 55855285 55878389 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_AJ_T0062364.1 MGP_AJ_G0027530.1 mouse_genomes_project 3 92873881 92880624 + MGP_AJ_P0062364 protein_coding protein_coding MGP_AJ_T0099133.1 MGP_AJ_G0037100.1 mouse_genomes_project 3 143534450 143535485 + D530037P16Rik sense_overlapping sense_overlapping MGP_AJ_T0064174.1 MGP_AJ_G0027914.1 mouse_genomes_project 3 143021612 143043611 - MGP_AJ_P0064174 Clca4b protein_coding protein_coding MGP_AJ_T0101121.1 MGP_AJ_G0039087.1 mouse_genomes_project 3 50540952 50541077 + Gm23675 snoRNA snoRNA MGP_AJ_T0001205.1 MGP_AJ_G0001129.1 mouse_genomes_project 3 49080976 49087936 - TEC TEC MGP_AJ_T0001242.1 MGP_AJ_G0001166.1 mouse_genomes_project 3 70346664 70348789 + TEC TEC MGP_AJ_T0064217.1 MGP_AJ_G0027923.1 mouse_genomes_project 3 144072256 144079073 + MGP_AJ_P0064217 2410004B18Rik protein_coding protein_coding MGP_AJ_T0064218.1 MGP_AJ_G0027923.1 mouse_genomes_project 3 144072284 144079071 + MGP_AJ_P0064218 2410004B18Rik protein_coding nonsense_mediated_decay MGP_AJ_T0064219.1 MGP_AJ_G0027923.1 mouse_genomes_project 3 144072432 144078054 + MGP_AJ_P0064219 2410004B18Rik protein_coding nonsense_mediated_decay MGP_AJ_T0064220.1 MGP_AJ_G0027923.1 mouse_genomes_project 3 144072478 144073030 + 2410004B18Rik protein_coding retained_intron MGP_AJ_T0064221.1 MGP_AJ_G0027923.1 mouse_genomes_project 3 144072527 144078486 + MGP_AJ_P0064221 2410004B18Rik protein_coding protein_coding MGP_AJ_T0064222.1 MGP_AJ_G0027923.1 mouse_genomes_project 3 144072886 144078097 + 2410004B18Rik protein_coding retained_intron MGP_AJ_T0064223.1 MGP_AJ_G0027923.1 mouse_genomes_project 3 144073328 144078442 + MGP_AJ_P0064223 2410004B18Rik protein_coding protein_coding MGP_AJ_T0061243.1 MGP_AJ_G0027268.1 mouse_genomes_project 3 72661857 72703278 - MGP_AJ_P0061243 Pdcd10 protein_coding protein_coding MGP_AJ_T0061244.1 MGP_AJ_G0027268.1 mouse_genomes_project 3 72662643 72667664 - Pdcd10 protein_coding retained_intron MGP_AJ_T0061245.1 MGP_AJ_G0027268.1 mouse_genomes_project 3 72663633 72687893 - MGP_AJ_P0061245 Pdcd10 protein_coding protein_coding MGP_AJ_T0061246.1 MGP_AJ_G0027268.1 mouse_genomes_project 3 72675513 72703181 - MGP_AJ_P0061246 Pdcd10 protein_coding protein_coding MGP_AJ_T0061247.1 MGP_AJ_G0027268.1 mouse_genomes_project 3 72680020 72703259 - Pdcd10 protein_coding retained_intron MGP_AJ_T0062913.1 MGP_AJ_G0027655.1 mouse_genomes_project 3 101665493 101677566 - Olfml3 protein_coding processed_transcript MGP_AJ_T0062914.1 MGP_AJ_G0027655.1 mouse_genomes_project 3 101675003 101681333 - MGP_AJ_P0062914 Olfml3 protein_coding protein_coding MGP_AJ_T0062915.1 MGP_AJ_G0027655.1 mouse_genomes_project 3 101675019 101675893 - MGP_AJ_P0062915 Olfml3 protein_coding protein_coding MGP_AJ_T0062916.1 MGP_AJ_G0027655.1 mouse_genomes_project 3 101677036 101681300 - Olfml3 protein_coding retained_intron MGP_AJ_T0001169.1 MGP_AJ_G0001095.1 mouse_genomes_project 3 41684270 41687560 + TEC TEC MGP_AJ_T0001258.1 MGP_AJ_G0001182.1 mouse_genomes_project 3 85911136 85912084 - TEC TEC MGP_AJ_T0001282.1 MGP_AJ_G0001206.1 mouse_genomes_project 3 104603614 104605647 + TEC TEC MGP_AJ_T0013975.1 MGP_AJ_G0012070.1 mouse_genomes_project 3 27689683 27690156 - processed_pseudogene processed_pseudogene MGP_AJ_T0102541.1 MGP_AJ_G0040283.1 mouse_genomes_project 3 77294294 77294445 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0007773.1 MGP_AJ_G0006355.1 mouse_genomes_project 3 147436732 147481009 + Gm42649 lincRNA lincRNA MGP_AJ_T0001198.1 MGP_AJ_G0001123.1 mouse_genomes_project 3 48893256 48896160 - TEC TEC MGP_AJ_T0001402.1 MGP_AJ_G0001325.1 mouse_genomes_project 3 156550450 156554789 + TEC TEC MGP_AJ_T0014006.1 MGP_AJ_G0012101.1 mouse_genomes_project 3 35704920 35705455 - processed_pseudogene processed_pseudogene MGP_AJ_T0014111.1 MGP_AJ_G0012206.1 mouse_genomes_project 3 67163747 67163903 + processed_pseudogene processed_pseudogene MGP_AJ_T0007568.1 MGP_AJ_G0006192.1 mouse_genomes_project 3 60651405 60654173 - lincRNA lincRNA MGP_AJ_T0062618.1 MGP_AJ_G0027588.1 mouse_genomes_project 3 94402060 94419694 + MGP_AJ_P0062618 Gm42957 protein_coding nonsense_mediated_decay MGP_AJ_T0007548.1 MGP_AJ_G0006178.1 mouse_genomes_project 3 49776105 49813675 + Gm2447 lincRNA lincRNA MGP_AJ_T0007549.1 MGP_AJ_G0006178.1 mouse_genomes_project 3 49801620 49813673 + Gm2447 lincRNA lincRNA MGP_AJ_T0061358.1 MGP_AJ_G0027294.1 mouse_genomes_project 3 79985272 79996718 - MGP_AJ_P0061358 Lrat protein_coding protein_coding MGP_AJ_T0014246.1 MGP_AJ_G0012341.1 mouse_genomes_project 3 106516184 106516563 - processed_pseudogene processed_pseudogene MGP_AJ_T0061203.1 MGP_AJ_G0027255.1 mouse_genomes_project 3 66255413 66315043 - MGP_AJ_P0061203 Kpna4 protein_coding protein_coding MGP_AJ_T0061204.1 MGP_AJ_G0027255.1 mouse_genomes_project 3 66260485 66315022 - MGP_AJ_P0061204 Kpna4 protein_coding protein_coding MGP_AJ_T0061205.1 MGP_AJ_G0027255.1 mouse_genomes_project 3 66282810 66314560 - MGP_AJ_P0061205 Kpna4 protein_coding protein_coding MGP_AJ_T0014004.1 MGP_AJ_G0012099.1 mouse_genomes_project 3 35349565 35349908 + processed_pseudogene processed_pseudogene MGP_AJ_T0063262.1 MGP_AJ_G0027741.1 mouse_genomes_project 3 106637662 106647288 + Taf13 protein_coding processed_transcript MGP_AJ_T0063263.1 MGP_AJ_G0027741.1 mouse_genomes_project 3 106637663 106648258 + Taf13 protein_coding processed_transcript MGP_AJ_T0063264.1 MGP_AJ_G0027741.1 mouse_genomes_project 3 106637663 106649411 + MGP_AJ_P0063264 Taf13 protein_coding protein_coding MGP_AJ_T0063265.1 MGP_AJ_G0027741.1 mouse_genomes_project 3 106637675 106639269 + Taf13 protein_coding retained_intron MGP_AJ_T0001128.1 MGP_AJ_G0001054.1 mouse_genomes_project 3 27285017 27286652 - TEC TEC MGP_AJ_T0014298.1 MGP_AJ_G0012393.1 mouse_genomes_project 3 122332675 122332922 - processed_pseudogene processed_pseudogene MGP_AJ_T0014051.1 MGP_AJ_G0012146.1 mouse_genomes_project 3 51065209 51065617 + processed_pseudogene processed_pseudogene MGP_AJ_T0001164.1 MGP_AJ_G0001090.1 mouse_genomes_project 3 38052827 38053750 - TEC TEC MGP_AJ_T0001136.1 MGP_AJ_G0001062.1 mouse_genomes_project 3 29142026 29145077 + TEC TEC MGP_AJ_T0014212.1 MGP_AJ_G0012307.1 mouse_genomes_project 3 98320642 98321662 + processed_pseudogene processed_pseudogene MGP_AJ_T0061667.1 MGP_AJ_G0027363.1 mouse_genomes_project 3 85706546 85715581 + MGP_AJ_P0061667 Mex3a protein_coding protein_coding MGP_AJ_T0061132.1 MGP_AJ_G0027239.1 mouse_genomes_project 3 64188672 64558754 + MGP_AJ_P0061132 Rsrc1 protein_coding protein_coding MGP_AJ_T0061133.1 MGP_AJ_G0027239.1 mouse_genomes_project 3 64192996 64203922 + MGP_AJ_P0061133 Rsrc1 protein_coding protein_coding MGP_AJ_T0061134.1 MGP_AJ_G0027239.1 mouse_genomes_project 3 64192998 64560590 + MGP_AJ_P0061134 Rsrc1 protein_coding protein_coding MGP_AJ_T0061135.1 MGP_AJ_G0027239.1 mouse_genomes_project 3 64193011 64291869 + Rsrc1 protein_coding retained_intron MGP_AJ_T0061136.1 MGP_AJ_G0027239.1 mouse_genomes_project 3 64193011 64555917 + MGP_AJ_P0061136 Rsrc1 protein_coding protein_coding MGP_AJ_T0061137.1 MGP_AJ_G0027239.1 mouse_genomes_project 3 64193029 64560585 + MGP_AJ_P0061137 Rsrc1 protein_coding protein_coding MGP_AJ_T0061138.1 MGP_AJ_G0027239.1 mouse_genomes_project 3 64193030 64558753 + MGP_AJ_P0061138 Rsrc1 protein_coding protein_coding MGP_AJ_T0061139.1 MGP_AJ_G0027239.1 mouse_genomes_project 3 64193293 64560591 + MGP_AJ_P0061139 Rsrc1 protein_coding protein_coding MGP_AJ_T0061140.1 MGP_AJ_G0027239.1 mouse_genomes_project 3 64193304 64202160 + MGP_AJ_P0061140 Rsrc1 protein_coding protein_coding MGP_AJ_T0061141.1 MGP_AJ_G0027239.1 mouse_genomes_project 3 64198422 64202341 + Rsrc1 protein_coding retained_intron MGP_AJ_T0007769.1 MGP_AJ_G0006353.1 mouse_genomes_project 3 147351275 147355359 - Gm10287 lincRNA lincRNA MGP_AJ_T0007770.1 MGP_AJ_G0006353.1 mouse_genomes_project 3 147351281 147355359 - Gm10287 lincRNA lincRNA MGP_AJ_T0014011.1 MGP_AJ_G0012106.1 mouse_genomes_project 3 37900489 37900760 - processed_pseudogene processed_pseudogene MGP_AJ_T0064212.1 MGP_AJ_G0027921.1 mouse_genomes_project 3 143892525 144023978 + MGP_AJ_P0064212 Ddah1 protein_coding protein_coding MGP_AJ_T0064213.1 MGP_AJ_G0027921.1 mouse_genomes_project 3 143944203 144019100 + Ddah1 protein_coding processed_transcript MGP_AJ_T0007545.1 MGP_AJ_G0006175.1 mouse_genomes_project 3 49197886 49205829 - Gm30074 lincRNA lincRNA MGP_AJ_T0014307.1 MGP_AJ_G0012402.1 mouse_genomes_project 3 127350680 127351444 + processed_pseudogene processed_pseudogene MGP_AJ_T0061324.1 MGP_AJ_G0027284.1 mouse_genomes_project 3 79018310 79043542 + MGP_AJ_P0061324 Ctso protein_coding protein_coding MGP_AJ_T0061325.1 MGP_AJ_G0027284.1 mouse_genomes_project 3 79018332 79019034 + Ctso protein_coding retained_intron MGP_AJ_T0061326.1 MGP_AJ_G0027284.1 mouse_genomes_project 3 79018351 79028753 + Ctso protein_coding processed_transcript MGP_AJ_T0061327.1 MGP_AJ_G0027284.1 mouse_genomes_project 3 79037533 79041119 + Ctso protein_coding retained_intron MGP_AJ_T0063361.1 MGP_AJ_G0027759.1 mouse_genomes_project 3 112054054 112247020 + MGP_AJ_P0063361 Col11a1 protein_coding protein_coding MGP_AJ_T0063362.1 MGP_AJ_G0027759.1 mouse_genomes_project 3 112054054 112133103 + MGP_AJ_P0063362 Col11a1 protein_coding protein_coding MGP_AJ_T0063363.1 MGP_AJ_G0027759.1 mouse_genomes_project 3 112054148 112056659 + Col11a1 protein_coding retained_intron MGP_AJ_T0063364.1 MGP_AJ_G0027759.1 mouse_genomes_project 3 112083928 112084896 + Col11a1 protein_coding retained_intron MGP_AJ_T0063365.1 MGP_AJ_G0027759.1 mouse_genomes_project 3 112171723 112178619 + Col11a1 protein_coding retained_intron MGP_AJ_T0063366.1 MGP_AJ_G0027759.1 mouse_genomes_project 3 112189956 112245617 + MGP_AJ_P0063366 Col11a1 protein_coding nonsense_mediated_decay MGP_AJ_T0062471.1 MGP_AJ_G0027550.1 mouse_genomes_project 3 93428925 93440625 - MGP_AJ_P0062471 Adamtsl4 protein_coding protein_coding MGP_AJ_T0062472.1 MGP_AJ_G0027550.1 mouse_genomes_project 3 93428928 93440566 - MGP_AJ_P0062472 Adamtsl4 protein_coding protein_coding MGP_AJ_T0062473.1 MGP_AJ_G0027550.1 mouse_genomes_project 3 93429474 93429876 - Adamtsl4 protein_coding processed_transcript MGP_AJ_T0062474.1 MGP_AJ_G0027550.1 mouse_genomes_project 3 93431749 93432821 - Adamtsl4 protein_coding processed_transcript MGP_AJ_T0062475.1 MGP_AJ_G0027550.1 mouse_genomes_project 3 93437298 93440573 - MGP_AJ_P0062475 Adamtsl4 protein_coding protein_coding MGP_AJ_T0060098.1 MGP_AJ_G0027032.1 mouse_genomes_project 3 7471964 7476854 - Zfand1 protein_coding retained_intron MGP_AJ_T0060099.1 MGP_AJ_G0027032.1 mouse_genomes_project 3 7472941 7480738 - MGP_AJ_P0060099 Zfand1 protein_coding protein_coding MGP_AJ_T0060100.1 MGP_AJ_G0027032.1 mouse_genomes_project 3 7476784 7478338 - Zfand1 protein_coding retained_intron MGP_AJ_T0060101.1 MGP_AJ_G0027032.1 mouse_genomes_project 3 7478058 7483427 - Zfand1 protein_coding processed_transcript MGP_AJ_T0060102.1 MGP_AJ_G0027032.1 mouse_genomes_project 3 7482603 7483429 - Zfand1 protein_coding processed_transcript MGP_AJ_T0001338.1 MGP_AJ_G0001262.1 mouse_genomes_project 3 125874409 125877818 - TEC TEC MGP_AJ_T0007572.1 MGP_AJ_G0006196.1 mouse_genomes_project 3 65952095 65953268 + Gm35584 lincRNA lincRNA MGP_AJ_T0063059.1 MGP_AJ_G0027687.1 mouse_genomes_project 3 103952467 103971307 - MGP_AJ_P0063059 Pifo protein_coding protein_coding MGP_AJ_T0063060.1 MGP_AJ_G0027687.1 mouse_genomes_project 3 103952476 103956992 - MGP_AJ_P0063060 Pifo protein_coding protein_coding MGP_AJ_T0013914.1 MGP_AJ_G0012009.1 mouse_genomes_project 3 6759268 6759651 + processed_pseudogene processed_pseudogene MGP_AJ_T0010539.1 MGP_AJ_G0008661.1 mouse_genomes_project 3 101613596 101613682 - Gm25325 miRNA miRNA MGP_AJ_T0063251.1 MGP_AJ_G0027738.1 mouse_genomes_project 3 106520600 106601154 - MGP_AJ_P0063251 5330417C22Rik protein_coding protein_coding MGP_AJ_T0063252.1 MGP_AJ_G0027738.1 mouse_genomes_project 3 106522983 106601230 - MGP_AJ_P0063252 5330417C22Rik protein_coding nonsense_mediated_decay MGP_AJ_T0063253.1 MGP_AJ_G0027738.1 mouse_genomes_project 3 106523089 106601234 - MGP_AJ_P0063253 5330417C22Rik protein_coding protein_coding MGP_AJ_T0063254.1 MGP_AJ_G0027738.1 mouse_genomes_project 3 106528272 106529701 - 5330417C22Rik protein_coding retained_intron MGP_AJ_T0063255.1 MGP_AJ_G0027738.1 mouse_genomes_project 3 106532485 106534812 - 5330417C22Rik protein_coding retained_intron MGP_AJ_T0063256.1 MGP_AJ_G0027738.1 mouse_genomes_project 3 106556633 106601165 - 5330417C22Rik protein_coding retained_intron MGP_AJ_T0061909.1 MGP_AJ_G0027401.1 mouse_genomes_project 3 86648075 86659949 - MGP_AJ_P0061909 Flad1 protein_coding protein_coding MGP_AJ_T0061910.1 MGP_AJ_G0027401.1 mouse_genomes_project 3 86649040 86659942 - MGP_AJ_P0061910 Flad1 protein_coding protein_coding MGP_AJ_T0061911.1 MGP_AJ_G0027401.1 mouse_genomes_project 3 86649738 86659948 - MGP_AJ_P0061911 Flad1 protein_coding protein_coding MGP_AJ_T0061912.1 MGP_AJ_G0027401.1 mouse_genomes_project 3 86656808 86659860 - MGP_AJ_P0061912 Flad1 protein_coding protein_coding MGP_AJ_T0061913.1 MGP_AJ_G0027401.1 mouse_genomes_project 3 86657033 86659949 - MGP_AJ_P0061913 Flad1 protein_coding protein_coding MGP_AJ_T0062243.1 MGP_AJ_G0027511.1 mouse_genomes_project 3 92151041 92160688 - MGP_AJ_P0062243 Riiad1 protein_coding protein_coding MGP_AJ_T0062244.1 MGP_AJ_G0027511.1 mouse_genomes_project 3 92151043 92167948 - Riiad1 protein_coding processed_transcript MGP_AJ_T0062245.1 MGP_AJ_G0027511.1 mouse_genomes_project 3 92153723 92160019 - Riiad1 protein_coding processed_transcript MGP_AJ_T0014283.1 MGP_AJ_G0012378.1 mouse_genomes_project 3 119317132 119317736 - processed_pseudogene processed_pseudogene MGP_AJ_T0001115.1 MGP_AJ_G0001041.1 mouse_genomes_project 3 7927022 7928703 - TEC TEC MGP_AJ_T0001274.1 MGP_AJ_G0001198.1 mouse_genomes_project 3 95062118 95063307 - TEC TEC MGP_AJ_T0063085.1 MGP_AJ_G0027695.1 mouse_genomes_project 3 104584021 104611906 + MGP_AJ_P0063085 Dram2 protein_coding protein_coding MGP_AJ_T0063086.1 MGP_AJ_G0027695.1 mouse_genomes_project 3 104584050 104602422 + Dram2 protein_coding retained_intron MGP_AJ_T0063087.1 MGP_AJ_G0027695.1 mouse_genomes_project 3 104584054 104591498 + MGP_AJ_P0063087 Dram2 protein_coding protein_coding MGP_AJ_T0063088.1 MGP_AJ_G0027695.1 mouse_genomes_project 3 104584087 104610853 + MGP_AJ_P0063088 Dram2 protein_coding protein_coding MGP_AJ_T0063089.1 MGP_AJ_G0027695.1 mouse_genomes_project 3 104584093 104602263 + Dram2 protein_coding retained_intron MGP_AJ_T0063090.1 MGP_AJ_G0027695.1 mouse_genomes_project 3 104584095 104610853 + MGP_AJ_P0063090 Dram2 protein_coding protein_coding MGP_AJ_T0063091.1 MGP_AJ_G0027695.1 mouse_genomes_project 3 104584100 104591466 + MGP_AJ_P0063091 Dram2 protein_coding protein_coding MGP_AJ_T0063092.1 MGP_AJ_G0027695.1 mouse_genomes_project 3 104584100 104606893 + MGP_AJ_P0063092 Dram2 protein_coding protein_coding MGP_AJ_T0063093.1 MGP_AJ_G0027695.1 mouse_genomes_project 3 104584104 104606830 + MGP_AJ_P0063093 Dram2 protein_coding protein_coding MGP_AJ_T0064565.1 MGP_AJ_G0027976.1 mouse_genomes_project 3 157753498 157789526 + MGP_AJ_P0064565 Depdc1a protein_coding protein_coding MGP_AJ_T0064566.1 MGP_AJ_G0027976.1 mouse_genomes_project 3 157753516 157789149 + MGP_AJ_P0064566 Depdc1a protein_coding protein_coding MGP_AJ_T0064567.1 MGP_AJ_G0027976.1 mouse_genomes_project 3 157753523 157789032 + MGP_AJ_P0064567 Depdc1a protein_coding protein_coding MGP_AJ_T0101107.1 MGP_AJ_G0039073.1 mouse_genomes_project 3 14364799 14364938 - Gm24963 snoRNA snoRNA MGP_AJ_T0061223.1 MGP_AJ_G0027262.1 mouse_genomes_project 3 70097408 70174221 - MGP_AJ_P0061223 Sis protein_coding protein_coding MGP_AJ_T0061224.1 MGP_AJ_G0027262.1 mouse_genomes_project 3 70097411 70173306 - MGP_AJ_P0061224 Sis protein_coding protein_coding MGP_AJ_T0061225.1 MGP_AJ_G0027262.1 mouse_genomes_project 3 70156062 70157196 - Sis protein_coding retained_intron MGP_AJ_T0061226.1 MGP_AJ_G0027262.1 mouse_genomes_project 3 70171449 70174218 - Sis protein_coding retained_intron MGP_AJ_T0004293.1 MGP_AJ_G0003767.1 mouse_genomes_project 3 92735612 92741435 - Gm15265 antisense antisense MGP_AJ_T0004294.1 MGP_AJ_G0003767.1 mouse_genomes_project 3 92735646 92741858 - Gm15265 antisense antisense MGP_AJ_T0098665.1 MGP_AJ_G0036649.1 mouse_genomes_project 3 6934624 6934733 - Gm24786 rRNA rRNA MGP_AJ_T0007490.1 MGP_AJ_G0006133.1 mouse_genomes_project 3 25981425 25982323 - lincRNA lincRNA MGP_AJ_T0060856.1 MGP_AJ_G0027174.1 mouse_genomes_project 3 51784575 51791291 - MGP_AJ_P0060856 Exosc8 protein_coding protein_coding MGP_AJ_T0060857.1 MGP_AJ_G0027174.1 mouse_genomes_project 3 51784578 51785356 - Exosc8 protein_coding retained_intron MGP_AJ_T0060858.1 MGP_AJ_G0027174.1 mouse_genomes_project 3 51784579 51790935 - Exosc8 protein_coding retained_intron MGP_AJ_T0060859.1 MGP_AJ_G0027174.1 mouse_genomes_project 3 51785738 51790700 - Exosc8 protein_coding retained_intron MGP_AJ_T0060860.1 MGP_AJ_G0027174.1 mouse_genomes_project 3 51785750 51790211 - MGP_AJ_P0060860 Exosc8 protein_coding nonsense_mediated_decay MGP_AJ_T0060861.1 MGP_AJ_G0027174.1 mouse_genomes_project 3 51787195 51791265 - Exosc8 protein_coding retained_intron MGP_AJ_T0060862.1 MGP_AJ_G0027174.1 mouse_genomes_project 3 51787890 51790944 - MGP_AJ_P0060862 Exosc8 protein_coding protein_coding MGP_AJ_T0060863.1 MGP_AJ_G0027174.1 mouse_genomes_project 3 51788039 51790235 - Exosc8 protein_coding retained_intron MGP_AJ_T0060864.1 MGP_AJ_G0027174.1 mouse_genomes_project 3 51788049 51789121 - Exosc8 protein_coding retained_intron MGP_AJ_T0060865.1 MGP_AJ_G0027174.1 mouse_genomes_project 3 51789498 51790933 - Exosc8 protein_coding retained_intron MGP_AJ_T0060866.1 MGP_AJ_G0027174.1 mouse_genomes_project 3 51789840 51790933 - Exosc8 protein_coding retained_intron MGP_AJ_T0063647.1 MGP_AJ_G0027816.1 mouse_genomes_project 3 124384264 124459326 + MGP_AJ_P0063647 Arsj protein_coding protein_coding MGP_AJ_T0014157.1 MGP_AJ_G0012252.1 mouse_genomes_project 3 84165634 84166163 + processed_pseudogene processed_pseudogene MGP_AJ_T0007630.1 MGP_AJ_G0006237.1 mouse_genomes_project 3 93609083 93615254 + Gm26594 lincRNA lincRNA MGP_AJ_T0063127.1 MGP_AJ_G0027709.1 mouse_genomes_project 3 105513068 105561786 - MGP_AJ_P0063127 Slc6a17 protein_coding protein_coding MGP_AJ_T0063128.1 MGP_AJ_G0027709.1 mouse_genomes_project 3 105513073 105561786 - MGP_AJ_P0063128 Slc6a17 protein_coding protein_coding MGP_AJ_T0063129.1 MGP_AJ_G0027709.1 mouse_genomes_project 3 105513074 105544294 - MGP_AJ_P0063129 Slc6a17 protein_coding nonsense_mediated_decay MGP_AJ_T0063130.1 MGP_AJ_G0027709.1 mouse_genomes_project 3 105513076 105514231 - Slc6a17 protein_coding processed_transcript MGP_AJ_T0063131.1 MGP_AJ_G0027709.1 mouse_genomes_project 3 105525857 105561517 - Slc6a17 protein_coding processed_transcript MGP_AJ_T0063132.1 MGP_AJ_G0027709.1 mouse_genomes_project 3 105533534 105536960 - Slc6a17 protein_coding processed_transcript MGP_AJ_T0063133.1 MGP_AJ_G0027709.1 mouse_genomes_project 3 105533536 105561786 - Slc6a17 protein_coding retained_intron MGP_AJ_T0063134.1 MGP_AJ_G0027709.1 mouse_genomes_project 3 105539478 105561713 - Slc6a17 protein_coding processed_transcript MGP_AJ_T0063135.1 MGP_AJ_G0027709.1 mouse_genomes_project 3 105539524 105561105 - MGP_AJ_P0063135 Slc6a17 protein_coding protein_coding MGP_AJ_T0063136.1 MGP_AJ_G0027709.1 mouse_genomes_project 3 105544434 105561095 - Slc6a17 protein_coding processed_transcript MGP_AJ_T0101161.1 MGP_AJ_G0039127.1 mouse_genomes_project 3 118707461 118707589 - Gm25013 snoRNA snoRNA MGP_AJ_T0061587.1 MGP_AJ_G0027349.1 mouse_genomes_project 3 85393529 85405365 - MGP_AJ_P0061587 Rhbg protein_coding protein_coding MGP_AJ_T0014097.1 MGP_AJ_G0012192.1 mouse_genomes_project 3 64801703 64802279 - processed_pseudogene processed_pseudogene MGP_AJ_T0007582.1 MGP_AJ_G0006204.1 mouse_genomes_project 3 72907211 72932630 + lincRNA lincRNA MGP_AJ_T0001314.1 MGP_AJ_G0001238.1 mouse_genomes_project 3 121310369 121312929 - TEC TEC MGP_AJ_T0063845.1 MGP_AJ_G0027848.1 mouse_genomes_project 3 130084794 130180898 + MGP_AJ_P0063845 Dkk2 protein_coding protein_coding MGP_AJ_T0061355.1 MGP_AJ_G0027293.1 mouse_genomes_project 3 79930118 79969310 - MGP_AJ_P0061355 Rbm46 protein_coding protein_coding MGP_AJ_T0061356.1 MGP_AJ_G0027293.1 mouse_genomes_project 3 79930705 79959343 - MGP_AJ_P0061356 Rbm46 protein_coding protein_coding MGP_AJ_T0061357.1 MGP_AJ_G0027293.1 mouse_genomes_project 3 79930708 79959343 - MGP_AJ_P0061357 Rbm46 protein_coding protein_coding MGP_AJ_T0014372.1 MGP_AJ_G0012467.1 mouse_genomes_project 3 150146284 150146762 - processed_pseudogene processed_pseudogene MGP_AJ_T0004237.1 MGP_AJ_G0003725.1 mouse_genomes_project 3 49001974 49011179 + Gm20089 antisense antisense MGP_AJ_T0001366.1 MGP_AJ_G0001289.1 mouse_genomes_project 3 134823410 134824413 - TEC TEC MGP_AJ_T0064033.1 MGP_AJ_G0027884.1 mouse_genomes_project 3 136261809 136277569 + MGP_AJ_P0064033 Adh7 protein_coding protein_coding MGP_AJ_T0064034.1 MGP_AJ_G0027884.1 mouse_genomes_project 3 136265627 136267244 + Adh7 protein_coding retained_intron MGP_AJ_T0064035.1 MGP_AJ_G0027884.1 mouse_genomes_project 3 136272205 136275596 + Adh7 protein_coding processed_transcript MGP_AJ_T0098969.1 MGP_AJ_G0036946.1 mouse_genomes_project 3 98491783 98496998 - Gm43466 sense_intronic sense_intronic MGP_AJ_T0063533.1 MGP_AJ_G0027793.1 mouse_genomes_project 3 120037686 120059059 + MGP_AJ_P0063533 Arhgap29 protein_coding protein_coding MGP_AJ_T0063534.1 MGP_AJ_G0027793.1 mouse_genomes_project 3 120038374 120101896 + MGP_AJ_P0063534 Arhgap29 protein_coding protein_coding MGP_AJ_T0063535.1 MGP_AJ_G0027793.1 mouse_genomes_project 3 120038375 120074057 + MGP_AJ_P0063535 Arhgap29 protein_coding protein_coding MGP_AJ_T0063536.1 MGP_AJ_G0027793.1 mouse_genomes_project 3 120052958 120077940 + MGP_AJ_P0063536 Arhgap29 protein_coding protein_coding MGP_AJ_T0063537.1 MGP_AJ_G0027793.1 mouse_genomes_project 3 120052958 120095057 + MGP_AJ_P0063537 Arhgap29 protein_coding protein_coding MGP_AJ_T0063538.1 MGP_AJ_G0027793.1 mouse_genomes_project 3 120052977 120100118 + MGP_AJ_P0063538 Arhgap29 protein_coding protein_coding MGP_AJ_T0063539.1 MGP_AJ_G0027793.1 mouse_genomes_project 3 120066690 120078035 + Arhgap29 protein_coding retained_intron MGP_AJ_T0063540.1 MGP_AJ_G0027793.1 mouse_genomes_project 3 120074009 120077709 + Arhgap29 protein_coding retained_intron MGP_AJ_T0063541.1 MGP_AJ_G0027793.1 mouse_genomes_project 3 120088131 120090941 + Arhgap29 protein_coding retained_intron MGP_AJ_T0004206.1 MGP_AJ_G0003703.1 mouse_genomes_project 3 25822726 25902577 - antisense antisense MGP_AJ_T0004207.1 MGP_AJ_G0003703.1 mouse_genomes_project 3 25859834 25863277 - antisense antisense MGP_AJ_T0014036.1 MGP_AJ_G0012131.1 mouse_genomes_project 3 46819197 46819660 - processed_pseudogene processed_pseudogene MGP_AJ_T0014347.1 MGP_AJ_G0012442.1 mouse_genomes_project 3 137176608 137177046 - processed_pseudogene processed_pseudogene MGP_AJ_T0060457.1 MGP_AJ_G0027106.1 mouse_genomes_project 3 30958706 30978499 + MGP_AJ_P0060457 Ttc14 protein_coding protein_coding MGP_AJ_T0060458.1 MGP_AJ_G0027106.1 mouse_genomes_project 3 30959049 30959746 + Ttc14 protein_coding retained_intron MGP_AJ_T0060459.1 MGP_AJ_G0027106.1 mouse_genomes_project 3 30959057 30960359 + Ttc14 protein_coding retained_intron MGP_AJ_T0060460.1 MGP_AJ_G0027106.1 mouse_genomes_project 3 30959065 30971213 + MGP_AJ_P0060460 Ttc14 protein_coding protein_coding MGP_AJ_T0060461.1 MGP_AJ_G0027106.1 mouse_genomes_project 3 30959065 30961821 + MGP_AJ_P0060461 Ttc14 protein_coding protein_coding MGP_AJ_T0060462.1 MGP_AJ_G0027106.1 mouse_genomes_project 3 30959084 30971065 + MGP_AJ_P0060462 Ttc14 protein_coding protein_coding MGP_AJ_T0060463.1 MGP_AJ_G0027106.1 mouse_genomes_project 3 30959087 30972846 + MGP_AJ_P0060463 Ttc14 protein_coding nonsense_mediated_decay MGP_AJ_T0060464.1 MGP_AJ_G0027106.1 mouse_genomes_project 3 30959087 30975935 + MGP_AJ_P0060464 Ttc14 protein_coding protein_coding MGP_AJ_T0060465.1 MGP_AJ_G0027106.1 mouse_genomes_project 3 30959125 30973587 + MGP_AJ_P0060465 Ttc14 protein_coding protein_coding MGP_AJ_T0060466.1 MGP_AJ_G0027106.1 mouse_genomes_project 3 30959137 30970663 + MGP_AJ_P0060466 Ttc14 protein_coding protein_coding MGP_AJ_T0060467.1 MGP_AJ_G0027106.1 mouse_genomes_project 3 30960081 30971197 + MGP_AJ_P0060467 Ttc14 protein_coding nonsense_mediated_decay MGP_AJ_T0060468.1 MGP_AJ_G0027106.1 mouse_genomes_project 3 30961426 30962002 + Ttc14 protein_coding retained_intron MGP_AJ_T0014331.1 MGP_AJ_G0012426.1 mouse_genomes_project 3 133562815 133563374 - processed_pseudogene processed_pseudogene MGP_AJ_T0014161.1 MGP_AJ_G0012256.1 mouse_genomes_project 3 85752500 85753230 - processed_pseudogene processed_pseudogene MGP_AJ_T0001139.1 MGP_AJ_G0001065.1 mouse_genomes_project 3 30275069 30277507 - TEC TEC MGP_AJ_T0001388.1 MGP_AJ_G0001311.1 mouse_genomes_project 3 152473358 152475362 - TEC TEC MGP_AJ_T0001349.1 MGP_AJ_G0001272.1 mouse_genomes_project 3 128770459 128772830 - TEC TEC MGP_AJ_T0014027.1 MGP_AJ_G0012122.1 mouse_genomes_project 3 44067344 44069886 - processed_pseudogene processed_pseudogene MGP_AJ_T0060435.1 MGP_AJ_G0027103.1 mouse_genomes_project 3 29932126 29943833 + MGP_AJ_P0060435 Ndufb5 protein_coding protein_coding MGP_AJ_T0060436.1 MGP_AJ_G0027103.1 mouse_genomes_project 3 29932131 29935256 + Ndufb5 protein_coding retained_intron MGP_AJ_T0060437.1 MGP_AJ_G0027103.1 mouse_genomes_project 3 29932137 29946498 + MGP_AJ_P0060437 Ndufb5 protein_coding protein_coding MGP_AJ_T0060438.1 MGP_AJ_G0027103.1 mouse_genomes_project 3 29932161 29946179 + MGP_AJ_P0060438 Ndufb5 protein_coding nonsense_mediated_decay MGP_AJ_T0060439.1 MGP_AJ_G0027103.1 mouse_genomes_project 3 29932162 29943404 + MGP_AJ_P0060439 Ndufb5 protein_coding nonsense_mediated_decay MGP_AJ_T0060440.1 MGP_AJ_G0027103.1 mouse_genomes_project 3 29936648 29946035 + MGP_AJ_P0060440 Ndufb5 protein_coding protein_coding MGP_AJ_T0011547.1 MGP_AJ_G0009669.1 mouse_genomes_project 3 98655054 98655316 - Gm23465 misc_RNA misc_RNA MGP_AJ_T0014337.1 MGP_AJ_G0012432.1 mouse_genomes_project 3 135013827 135014143 + processed_pseudogene processed_pseudogene MGP_AJ_T0062365.1 MGP_AJ_G0027531.1 mouse_genomes_project 3 92880616 92883459 - MGP_AJ_P0062365 Tnfaip8l2 protein_coding protein_coding MGP_AJ_T0064410.1 MGP_AJ_G0027952.1 mouse_genomes_project 3 150666250 150866510 - MGP_AJ_P0064410 Ak5 protein_coding protein_coding MGP_AJ_T0064411.1 MGP_AJ_G0027952.1 mouse_genomes_project 3 150667298 150731336 - MGP_AJ_P0064411 Ak5 protein_coding protein_coding MGP_AJ_T0064412.1 MGP_AJ_G0027952.1 mouse_genomes_project 3 150676129 150681906 - Ak5 protein_coding retained_intron MGP_AJ_T0004395.1 MGP_AJ_G0003830.1 mouse_genomes_project 3 139491961 139499321 - Gm15688 antisense antisense MGP_AJ_T0007654.1 MGP_AJ_G0006258.1 mouse_genomes_project 3 101000816 101002126 + Gm43062 lincRNA lincRNA MGP_AJ_T0064016.1 MGP_AJ_G0027879.1 mouse_genomes_project 3 136096084 136114718 - MGP_AJ_P0064016 Gm5105 protein_coding protein_coding MGP_AJ_T0004218.1 MGP_AJ_G0003711.1 mouse_genomes_project 3 30137888 30183556 + Gm37459 antisense antisense MGP_AJ_T0014010.1 MGP_AJ_G0012105.1 mouse_genomes_project 3 37674174 37674474 - processed_pseudogene processed_pseudogene MGP_AJ_T0061527.1 MGP_AJ_G0027336.1 mouse_genomes_project 3 85048716 85058229 + MGP_AJ_P0061527 Hdgf protein_coding protein_coding MGP_AJ_T0061528.1 MGP_AJ_G0027336.1 mouse_genomes_project 3 85049137 85056745 + MGP_AJ_P0061528 Hdgf protein_coding nonsense_mediated_decay MGP_AJ_T0061529.1 MGP_AJ_G0027336.1 mouse_genomes_project 3 85049619 85056262 + Hdgf protein_coding processed_transcript MGP_AJ_T0061530.1 MGP_AJ_G0027336.1 mouse_genomes_project 3 85052128 85056278 + Hdgf protein_coding processed_transcript MGP_AJ_T0061531.1 MGP_AJ_G0027336.1 mouse_genomes_project 3 85056056 85056873 + Hdgf protein_coding retained_intron MGP_AJ_T0014086.1 MGP_AJ_G0012181.1 mouse_genomes_project 3 62860203 62861010 - processed_pseudogene processed_pseudogene MGP_AJ_T0001127.1 MGP_AJ_G0001053.1 mouse_genomes_project 3 26360964 26362320 + TEC TEC MGP_AJ_T0004259.1 MGP_AJ_G0003742.1 mouse_genomes_project 3 63207073 63211352 + Gm37305 antisense antisense MGP_AJ_T0014360.1 MGP_AJ_G0012455.1 mouse_genomes_project 3 142689796 142690358 - processed_pseudogene processed_pseudogene MGP_AJ_T0062291.1 MGP_AJ_G0027519.1 mouse_genomes_project 3 92652292 92672954 + MGP_AJ_P0062291 protein_coding unknown_likely_coding MGP_AJ_T0062292.1 MGP_AJ_G0027519.1 mouse_genomes_project 3 92653657 92672736 + protein_coding retained_intron MGP_AJ_T0062293.1 MGP_AJ_G0027519.1 mouse_genomes_project 3 92653750 92672736 + protein_coding processed_transcript MGP_AJ_T0001137.1 MGP_AJ_G0001063.1 mouse_genomes_project 3 29635100 29636257 + TEC TEC MGP_AJ_T0101163.1 MGP_AJ_G0039129.1 mouse_genomes_project 3 122535942 122536072 + Gm22900 snoRNA snoRNA MGP_AJ_T0007754.1 MGP_AJ_G0006340.1 mouse_genomes_project 3 141831814 141833724 + Gm42706 lincRNA lincRNA MGP_AJ_T0014134.1 MGP_AJ_G0012229.1 mouse_genomes_project 3 75230514 75232078 - processed_pseudogene processed_pseudogene MGP_AJ_T0101795.1 MGP_AJ_G0039705.1 mouse_genomes_project 3 120887171 120887465 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0007564.1 MGP_AJ_G0006189.1 mouse_genomes_project 3 55759404 55853664 + 4930593A02Rik lincRNA lincRNA MGP_AJ_T0007565.1 MGP_AJ_G0006189.1 mouse_genomes_project 3 55798987 55862409 + 4930593A02Rik lincRNA lincRNA MGP_AJ_T0001326.1 MGP_AJ_G0001250.1 mouse_genomes_project 3 124998598 124999638 - TEC TEC MGP_AJ_T0063581.1 MGP_AJ_G0027800.1 mouse_genomes_project 3 120962146 120962601 + MGP_AJ_P0063581 protein_coding protein_coding MGP_AJ_T0063072.1 MGP_AJ_G0027693.1 mouse_genomes_project 3 104518111 104524352 + Dennd2d protein_coding processed_transcript MGP_AJ_T0063073.1 MGP_AJ_G0027693.1 mouse_genomes_project 3 104518137 104538824 + MGP_AJ_P0063073 Dennd2d protein_coding protein_coding MGP_AJ_T0063074.1 MGP_AJ_G0027693.1 mouse_genomes_project 3 104518156 104524370 + MGP_AJ_P0063074 Dennd2d protein_coding nonsense_mediated_decay MGP_AJ_T0063075.1 MGP_AJ_G0027693.1 mouse_genomes_project 3 104521814 104536829 + MGP_AJ_P0063075 Dennd2d protein_coding protein_coding MGP_AJ_T0063076.1 MGP_AJ_G0027693.1 mouse_genomes_project 3 104523182 104524406 + Dennd2d protein_coding retained_intron MGP_AJ_T0063077.1 MGP_AJ_G0027693.1 mouse_genomes_project 3 104528937 104531058 + Dennd2d protein_coding retained_intron MGP_AJ_T0062206.1 MGP_AJ_G0027497.1 mouse_genomes_project 3 90860489 90865006 + Flg protein_coding TEC MGP_AJ_T0062207.1 MGP_AJ_G0027497.1 mouse_genomes_project 3 90860507 90867271 + MGP_AJ_P0062207 Flg protein_coding protein_coding MGP_AJ_T0062208.1 MGP_AJ_G0027497.1 mouse_genomes_project 3 90864528 90867271 + MGP_AJ_P0062208 Flg protein_coding protein_coding MGP_AJ_T0061052.1 MGP_AJ_G0027220.1 mouse_genomes_project 3 59722946 59795628 - MGP_AJ_P0061052 Gpr149 protein_coding protein_coding MGP_AJ_T0061053.1 MGP_AJ_G0027220.1 mouse_genomes_project 3 59784777 59793271 - Gpr149 protein_coding retained_intron MGP_AJ_T0099880.1 MGP_AJ_G0037846.1 mouse_genomes_project 3 135764096 135764201 + Gm25080 snRNA snRNA MGP_AJ_T0001277.1 MGP_AJ_G0001201.1 mouse_genomes_project 3 95835505 95840626 + TEC TEC MGP_AJ_T0007784.1 MGP_AJ_G0006361.1 mouse_genomes_project 3 150075050 150082919 + Gm43617 lincRNA lincRNA MGP_AJ_T0060475.1 MGP_AJ_G0027108.1 mouse_genomes_project 3 31179152 31228931 + MGP_AJ_P0060475 Fxr1 protein_coding protein_coding MGP_AJ_T0060476.1 MGP_AJ_G0027108.1 mouse_genomes_project 3 31179307 31228960 + MGP_AJ_P0060476 Fxr1 protein_coding nonsense_mediated_decay MGP_AJ_T0060477.1 MGP_AJ_G0027108.1 mouse_genomes_project 3 31179314 31228934 + MGP_AJ_P0060477 Fxr1 protein_coding protein_coding MGP_AJ_T0060478.1 MGP_AJ_G0027108.1 mouse_genomes_project 3 31179317 31228934 + MGP_AJ_P0060478 Fxr1 protein_coding protein_coding MGP_AJ_T0060479.1 MGP_AJ_G0027108.1 mouse_genomes_project 3 31179317 31229911 + MGP_AJ_P0060479 Fxr1 protein_coding protein_coding MGP_AJ_T0060480.1 MGP_AJ_G0027108.1 mouse_genomes_project 3 31179322 31223916 + MGP_AJ_P0060480 Fxr1 protein_coding protein_coding MGP_AJ_T0060481.1 MGP_AJ_G0027108.1 mouse_genomes_project 3 31199194 31201328 + Fxr1 protein_coding retained_intron MGP_AJ_T0060482.1 MGP_AJ_G0027108.1 mouse_genomes_project 3 31199197 31206195 + MGP_AJ_P0060482 Fxr1 protein_coding protein_coding MGP_AJ_T0060483.1 MGP_AJ_G0027108.1 mouse_genomes_project 3 31206289 31208777 + Fxr1 protein_coding retained_intron MGP_AJ_T0063433.1 MGP_AJ_G0027774.1 mouse_genomes_project 3 114670729 114710992 - MGP_AJ_P0063433 Gm43191 protein_coding protein_coding MGP_AJ_T0007715.1 MGP_AJ_G0006306.1 mouse_genomes_project 3 131298586 131301077 - Gm43254 lincRNA lincRNA MGP_AJ_T0001353.1 MGP_AJ_G0001276.1 mouse_genomes_project 3 129204281 129206539 + TEC TEC MGP_AJ_T0101151.1 MGP_AJ_G0039117.1 mouse_genomes_project 3 101332226 101332328 + Gm25009 snoRNA snoRNA MGP_AJ_T0102523.1 MGP_AJ_G0040265.1 mouse_genomes_project 3 639475 639903 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0060706.1 MGP_AJ_G0027147.1 mouse_genomes_project 3 38667825 38783545 - MGP_AJ_P0060706 Sclt1 protein_coding protein_coding MGP_AJ_T0060707.1 MGP_AJ_G0027147.1 mouse_genomes_project 3 38668047 38783059 - MGP_AJ_P0060707 Sclt1 protein_coding nonsense_mediated_decay MGP_AJ_T0060708.1 MGP_AJ_G0027147.1 mouse_genomes_project 3 38668047 38783512 - MGP_AJ_P0060708 Sclt1 protein_coding nonsense_mediated_decay MGP_AJ_T0060709.1 MGP_AJ_G0027147.1 mouse_genomes_project 3 38668211 38671216 - Sclt1 protein_coding retained_intron MGP_AJ_T0060710.1 MGP_AJ_G0027147.1 mouse_genomes_project 3 38670492 38714529 - Sclt1 protein_coding retained_intron MGP_AJ_T0060711.1 MGP_AJ_G0027147.1 mouse_genomes_project 3 38698687 38705459 - MGP_AJ_P0060711 Sclt1 protein_coding nonsense_mediated_decay MGP_AJ_T0060712.1 MGP_AJ_G0027147.1 mouse_genomes_project 3 38715037 38759465 - Sclt1 protein_coding retained_intron MGP_AJ_T0060713.1 MGP_AJ_G0027147.1 mouse_genomes_project 3 38782549 38783436 - Sclt1 protein_coding retained_intron MGP_AJ_T0001395.1 MGP_AJ_G0001318.1 mouse_genomes_project 3 155317577 155319158 + TEC TEC MGP_AJ_T0001228.1 MGP_AJ_G0001152.1 mouse_genomes_project 3 56330628 56332151 + TEC TEC MGP_AJ_T0004334.1 MGP_AJ_G0003793.1 mouse_genomes_project 3 105943465 105950833 - 4933431E20Rik antisense antisense MGP_AJ_T0004335.1 MGP_AJ_G0003793.1 mouse_genomes_project 3 105944652 105950386 - 4933431E20Rik antisense antisense MGP_AJ_T0004336.1 MGP_AJ_G0003793.1 mouse_genomes_project 3 105946090 105950418 - 4933431E20Rik antisense antisense MGP_AJ_T0004337.1 MGP_AJ_G0003793.1 mouse_genomes_project 3 105947483 105950312 - 4933431E20Rik antisense antisense MGP_AJ_T0004338.1 MGP_AJ_G0003793.1 mouse_genomes_project 3 105947514 105950393 - 4933431E20Rik antisense antisense MGP_AJ_T0004339.1 MGP_AJ_G0003793.1 mouse_genomes_project 3 105947743 105950429 - 4933431E20Rik antisense antisense MGP_AJ_T0004340.1 MGP_AJ_G0003793.1 mouse_genomes_project 3 105947842 105950394 - 4933431E20Rik antisense antisense MGP_AJ_T0004341.1 MGP_AJ_G0003793.1 mouse_genomes_project 3 105947886 105950403 - 4933431E20Rik antisense antisense MGP_AJ_T0004342.1 MGP_AJ_G0003793.1 mouse_genomes_project 3 105948038 105950409 - 4933431E20Rik antisense antisense MGP_AJ_T0004343.1 MGP_AJ_G0003793.1 mouse_genomes_project 3 105948092 105950420 - 4933431E20Rik antisense antisense MGP_AJ_T0004344.1 MGP_AJ_G0003793.1 mouse_genomes_project 3 105948122 105950383 - 4933431E20Rik antisense antisense MGP_AJ_T0004345.1 MGP_AJ_G0003793.1 mouse_genomes_project 3 105948748 105950432 - 4933431E20Rik antisense antisense MGP_AJ_T0004399.1 MGP_AJ_G0003834.1 mouse_genomes_project 3 142919558 142920113 + Gm34866 antisense antisense MGP_AJ_T0099001.1 MGP_AJ_G0036978.1 mouse_genomes_project 3 102457230 102458441 - 4930509H03Rik sense_intronic sense_intronic MGP_AJ_T0014012.1 MGP_AJ_G0012107.1 mouse_genomes_project 3 37940869 37941317 - processed_pseudogene processed_pseudogene MGP_AJ_T0014159.1 MGP_AJ_G0012254.1 mouse_genomes_project 3 85111995 85112416 + processed_pseudogene processed_pseudogene MGP_AJ_T0001159.1 MGP_AJ_G0001085.1 mouse_genomes_project 3 35127488 35128044 + TEC TEC MGP_AJ_T0099857.1 MGP_AJ_G0037823.1 mouse_genomes_project 3 92837804 92837911 + Gm22301 snRNA snRNA MGP_AJ_T0063383.1 MGP_AJ_G0027764.1 mouse_genomes_project 3 114020113 114021125 + Extl2 protein_coding processed_transcript MGP_AJ_T0063384.1 MGP_AJ_G0027764.1 mouse_genomes_project 3 114020151 114036741 + Extl2 protein_coding processed_transcript MGP_AJ_T0063385.1 MGP_AJ_G0027764.1 mouse_genomes_project 3 114020456 114023496 + Extl2 protein_coding processed_transcript MGP_AJ_T0063386.1 MGP_AJ_G0027764.1 mouse_genomes_project 3 114023319 114041627 + MGP_AJ_P0063386 Extl2 protein_coding protein_coding MGP_AJ_T0001171.1 MGP_AJ_G0001097.1 mouse_genomes_project 3 42290741 42292286 - TEC TEC MGP_AJ_T0062737.1 MGP_AJ_G0027616.1 mouse_genomes_project 3 96594353 96608885 - MGP_AJ_P0062737 Hsd3b2 protein_coding protein_coding MGP_AJ_T0062738.1 MGP_AJ_G0027616.1 mouse_genomes_project 3 96595425 96608873 - MGP_AJ_P0062738 Hsd3b2 protein_coding protein_coding MGP_AJ_T0007466.1 MGP_AJ_G0006116.1 mouse_genomes_project 3 10590214 10592905 - Gm2464 lincRNA lincRNA MGP_AJ_T0007722.1 MGP_AJ_G0006312.1 mouse_genomes_project 3 132415040 132435049 - 4930539C22Rik lincRNA lincRNA MGP_AJ_T0062792.1 MGP_AJ_G0027631.1 mouse_genomes_project 3 98915019 98954212 - MGP_AJ_P0062792 Cd101 protein_coding protein_coding MGP_AJ_T0062793.1 MGP_AJ_G0027631.1 mouse_genomes_project 3 98915022 98945566 - MGP_AJ_P0062793 Cd101 protein_coding protein_coding MGP_AJ_T0102565.1 MGP_AJ_G0040307.1 mouse_genomes_project 3 104280811 104302451 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0001367.1 MGP_AJ_G0001290.1 mouse_genomes_project 3 135944851 135947146 + TEC TEC MGP_AJ_T0004411.1 MGP_AJ_G0003843.1 mouse_genomes_project 3 152130610 152134374 + Gm43400 antisense antisense MGP_AJ_T0004376.1 MGP_AJ_G0003818.1 mouse_genomes_project 3 127822650 127833302 + 6330410L21Rik antisense antisense MGP_AJ_T0007779.1 MGP_AJ_G0006359.1 mouse_genomes_project 3 149454308 149456824 + 4930555A03Rik lincRNA lincRNA MGP_AJ_T0007780.1 MGP_AJ_G0006359.1 mouse_genomes_project 3 149454344 149456488 + 4930555A03Rik lincRNA lincRNA MGP_AJ_T0007781.1 MGP_AJ_G0006359.1 mouse_genomes_project 3 149454345 149455774 + 4930555A03Rik lincRNA lincRNA MGP_AJ_T0007782.1 MGP_AJ_G0006359.1 mouse_genomes_project 3 149455185 149456486 + 4930555A03Rik lincRNA lincRNA MGP_AJ_T0011553.1 MGP_AJ_G0009675.1 mouse_genomes_project 3 151830760 151831028 + Gm22136 misc_RNA misc_RNA MGP_AJ_T0061008.1 MGP_AJ_G0027209.1 mouse_genomes_project 3 56977959 56994319 + protein_coding unprocessed_pseudogene MGP_AJ_T0007570.1 MGP_AJ_G0006194.1 mouse_genomes_project 3 64764206 64766463 - 4930402C01Rik lincRNA lincRNA MGP_AJ_T0063860.1 MGP_AJ_G0027852.1 mouse_genomes_project 3 130880438 130950411 - MGP_AJ_P0063860 Npnt protein_coding protein_coding MGP_AJ_T0063861.1 MGP_AJ_G0027852.1 mouse_genomes_project 3 130880455 130950163 - MGP_AJ_P0063861 Npnt protein_coding protein_coding MGP_AJ_T0063862.1 MGP_AJ_G0027852.1 mouse_genomes_project 3 130881376 130950280 - MGP_AJ_P0063862 Npnt protein_coding protein_coding MGP_AJ_T0063863.1 MGP_AJ_G0027852.1 mouse_genomes_project 3 130883123 130950163 - MGP_AJ_P0063863 Npnt protein_coding protein_coding MGP_AJ_T0063864.1 MGP_AJ_G0027852.1 mouse_genomes_project 3 130883123 130950163 - MGP_AJ_P0063864 Npnt protein_coding protein_coding MGP_AJ_T0063865.1 MGP_AJ_G0027852.1 mouse_genomes_project 3 130889857 130905038 - Npnt protein_coding retained_intron MGP_AJ_T0014082.1 MGP_AJ_G0012177.1 mouse_genomes_project 3 60989194 60989845 + processed_pseudogene processed_pseudogene MGP_AJ_T0061519.1 MGP_AJ_G0027333.1 mouse_genomes_project 3 84937752 84956896 + MGP_AJ_P0061519 Insrr protein_coding protein_coding MGP_AJ_T0061520.1 MGP_AJ_G0027333.1 mouse_genomes_project 3 84937766 84945918 + Insrr protein_coding retained_intron MGP_AJ_T0061521.1 MGP_AJ_G0027333.1 mouse_genomes_project 3 84937895 84956847 + MGP_AJ_P0061521 Insrr protein_coding protein_coding MGP_AJ_T0061522.1 MGP_AJ_G0027333.1 mouse_genomes_project 3 84942775 84943641 + Insrr protein_coding processed_transcript MGP_AJ_T0004407.1 MGP_AJ_G0003840.1 mouse_genomes_project 3 151119014 151120175 + Gm16213 antisense antisense MGP_AJ_T0001265.1 MGP_AJ_G0001189.1 mouse_genomes_project 3 93107311 93108753 + TEC TEC MGP_AJ_T0062121.1 MGP_AJ_G0027436.1 mouse_genomes_project 3 87855861 87881653 + S100a3 protein_coding processed_transcript MGP_AJ_T0062122.1 MGP_AJ_G0027436.1 mouse_genomes_project 3 87880986 87898981 + MGP_AJ_P0062122 S100a3 protein_coding protein_coding MGP_AJ_T0062123.1 MGP_AJ_G0027436.1 mouse_genomes_project 3 87883279 87899027 + MGP_AJ_P0062123 S100a3 protein_coding protein_coding MGP_AJ_T0062125.1 MGP_AJ_G0027436.1 mouse_genomes_project 3 87896717 87899205 + MGP_AJ_P0062125 S100a3 protein_coding protein_coding MGP_AJ_T0062126.1 MGP_AJ_G0027436.1 mouse_genomes_project 3 87896747 87899205 + S100a3 protein_coding retained_intron MGP_AJ_T0061370.1 MGP_AJ_G0027300.1 mouse_genomes_project 3 80876511 80884511 + MGP_AJ_P0061370 Sfrp2 protein_coding protein_coding MGP_AJ_T0061371.1 MGP_AJ_G0027300.1 mouse_genomes_project 3 80876755 80880334 + Sfrp2 protein_coding processed_transcript MGP_AJ_T0061372.1 MGP_AJ_G0027300.1 mouse_genomes_project 3 80877043 80882344 + Sfrp2 protein_coding processed_transcript MGP_AJ_T0014216.1 MGP_AJ_G0012311.1 mouse_genomes_project 3 99159417 99159853 + processed_pseudogene processed_pseudogene MGP_AJ_T0062982.1 MGP_AJ_G0027669.1 mouse_genomes_project 3 102722985 102727947 + MGP_AJ_P0062982 Ppm1j protein_coding protein_coding MGP_AJ_T0062983.1 MGP_AJ_G0027669.1 mouse_genomes_project 3 102727537 102727947 + Ppm1j protein_coding retained_intron MGP_AJ_T0061764.1 MGP_AJ_G0027378.1 mouse_genomes_project 3 86323615 86329692 - MGP_AJ_P0061764 Rusc1 protein_coding protein_coding MGP_AJ_T0061765.1 MGP_AJ_G0027378.1 mouse_genomes_project 3 86323615 86332937 - MGP_AJ_P0061765 Rusc1 protein_coding protein_coding MGP_AJ_T0061766.1 MGP_AJ_G0027378.1 mouse_genomes_project 3 86323615 86332958 - MGP_AJ_P0061766 Rusc1 protein_coding protein_coding MGP_AJ_T0061767.1 MGP_AJ_G0027378.1 mouse_genomes_project 3 86326767 86329388 - Rusc1 protein_coding retained_intron MGP_AJ_T0061768.1 MGP_AJ_G0027378.1 mouse_genomes_project 3 86327867 86329622 - MGP_AJ_P0061768 Rusc1 protein_coding protein_coding MGP_AJ_T0061769.1 MGP_AJ_G0027378.1 mouse_genomes_project 3 86328701 86329402 - Rusc1 protein_coding retained_intron MGP_AJ_T0061770.1 MGP_AJ_G0027378.1 mouse_genomes_project 3 86328885 86329622 - MGP_AJ_P0061770 Rusc1 protein_coding protein_coding MGP_AJ_T0001323.1 MGP_AJ_G0001247.1 mouse_genomes_project 3 124697068 124697720 + TEC TEC MGP_AJ_T0010563.1 MGP_AJ_G0008685.1 mouse_genomes_project 3 149183865 149183936 - Mir3963 miRNA miRNA MGP_AJ_T0064173.1 MGP_AJ_G0027913.1 mouse_genomes_project 3 142969868 143082405 - MGP_AJ_P0064173 Clca4a protein_coding protein_coding MGP_AJ_T0098963.1 MGP_AJ_G0036940.1 mouse_genomes_project 3 92224586 92225464 - Gm43774 sense_intronic sense_intronic MGP_AJ_T0099841.1 MGP_AJ_G0037807.1 mouse_genomes_project 3 83082628 83082690 - Gm24501 snRNA snRNA MGP_AJ_T0001217.1 MGP_AJ_G0001141.1 mouse_genomes_project 3 52580798 52582816 + TEC TEC MGP_AJ_T0001213.1 MGP_AJ_G0001137.1 mouse_genomes_project 3 50537262 50538438 + TEC TEC MGP_AJ_T0007785.1 MGP_AJ_G0006362.1 mouse_genomes_project 3 150175076 150178904 + Gm43619 lincRNA lincRNA MGP_AJ_T0010513.1 MGP_AJ_G0008635.1 mouse_genomes_project 3 54665225 54665339 + Mir6377 miRNA miRNA MGP_AJ_T0014096.1 MGP_AJ_G0012191.1 mouse_genomes_project 3 64160038 64160360 + processed_pseudogene processed_pseudogene MGP_AJ_T0098998.1 MGP_AJ_G0036975.1 mouse_genomes_project 3 102132467 102135555 - Gm43256 sense_intronic sense_intronic MGP_AJ_T0060416.1 MGP_AJ_G0027100.1 mouse_genomes_project 3 29767902 29804492 - MGP_AJ_P0060416 Gnb4 protein_coding protein_coding MGP_AJ_T0060417.1 MGP_AJ_G0027100.1 mouse_genomes_project 3 29771567 29804432 - Gnb4 protein_coding retained_intron MGP_AJ_T0060418.1 MGP_AJ_G0027100.1 mouse_genomes_project 3 29771567 29804424 - MGP_AJ_P0060418 Gnb4 protein_coding protein_coding MGP_AJ_T0060419.1 MGP_AJ_G0027100.1 mouse_genomes_project 3 29772630 29804429 - MGP_AJ_P0060419 Gnb4 protein_coding nonsense_mediated_decay MGP_AJ_T0060420.1 MGP_AJ_G0027100.1 mouse_genomes_project 3 29775297 29785770 - Gnb4 protein_coding retained_intron MGP_AJ_T0060421.1 MGP_AJ_G0027100.1 mouse_genomes_project 3 29778727 29804386 - MGP_AJ_P0060421 Gnb4 protein_coding protein_coding MGP_AJ_T0060422.1 MGP_AJ_G0027100.1 mouse_genomes_project 3 29779803 29804432 - Gnb4 protein_coding retained_intron MGP_AJ_T0060423.1 MGP_AJ_G0027100.1 mouse_genomes_project 3 29787426 29804436 - Gnb4 protein_coding retained_intron MGP_AJ_T0004352.1 MGP_AJ_G0003799.1 mouse_genomes_project 3 108304207 108307899 + C130013H08Rik antisense antisense MGP_AJ_T0001288.1 MGP_AJ_G0001212.1 mouse_genomes_project 3 106621605 106623043 + TEC TEC MGP_AJ_T0001310.1 MGP_AJ_G0001234.1 mouse_genomes_project 3 120669097 120671646 - TEC TEC MGP_AJ_T0004250.1 MGP_AJ_G0003735.1 mouse_genomes_project 3 58200150 58202298 - Gm37035 antisense antisense MGP_AJ_T0013929.1 MGP_AJ_G0012024.1 mouse_genomes_project 3 10876340 10876899 + processed_pseudogene processed_pseudogene MGP_AJ_T0007447.1 MGP_AJ_G0006104.1 mouse_genomes_project 3 2221706 2226207 + Gm17308 lincRNA lincRNA MGP_AJ_T0007546.1 MGP_AJ_G0006176.1 mouse_genomes_project 3 49224096 49226338 + Gm37170 lincRNA lincRNA MGP_AJ_T0004246.1 MGP_AJ_G0003732.1 mouse_genomes_project 3 52960995 53004769 + Gm43376 antisense antisense MGP_AJ_T0004247.1 MGP_AJ_G0003732.1 mouse_genomes_project 3 52961066 52962953 + Gm43376 antisense antisense MGP_AJ_T0101136.1 MGP_AJ_G0039102.1 mouse_genomes_project 3 83261646 83261714 - Snord73a snoRNA snoRNA MGP_AJ_T0007459.1 MGP_AJ_G0006112.1 mouse_genomes_project 3 7133711 7136710 - Gm38335 lincRNA lincRNA MGP_AJ_T0014221.1 MGP_AJ_G0012316.1 mouse_genomes_project 3 100326189 100326773 - processed_pseudogene processed_pseudogene MGP_AJ_T0014367.1 MGP_AJ_G0012462.1 mouse_genomes_project 3 144828345 144829676 + processed_pseudogene processed_pseudogene MGP_AJ_T0007704.1 MGP_AJ_G0006297.1 mouse_genomes_project 3 128797340 128798325 + Gm42997 lincRNA lincRNA MGP_AJ_T0007705.1 MGP_AJ_G0006297.1 mouse_genomes_project 3 128797481 128842967 + Gm42997 lincRNA lincRNA MGP_AJ_T0001165.1 MGP_AJ_G0001091.1 mouse_genomes_project 3 38689642 38690730 - TEC TEC MGP_AJ_T0001329.1 MGP_AJ_G0001253.1 mouse_genomes_project 3 125040400 125042888 - TEC TEC MGP_AJ_T0061778.1 MGP_AJ_G0027380.1 mouse_genomes_project 3 86374053 86385003 + MGP_AJ_P0061778 Pklr protein_coding protein_coding MGP_AJ_T0061779.1 MGP_AJ_G0027380.1 mouse_genomes_project 3 86374085 86375367 + Pklr protein_coding processed_transcript MGP_AJ_T0061780.1 MGP_AJ_G0027380.1 mouse_genomes_project 3 86374483 86385188 + MGP_AJ_P0061780 Pklr protein_coding protein_coding MGP_AJ_T0061781.1 MGP_AJ_G0027380.1 mouse_genomes_project 3 86374490 86379948 + MGP_AJ_P0061781 Pklr protein_coding protein_coding MGP_AJ_T0061782.1 MGP_AJ_G0027380.1 mouse_genomes_project 3 86374534 86379316 + Pklr protein_coding processed_transcript MGP_AJ_T0007699.1 MGP_AJ_G0006292.1 mouse_genomes_project 3 125962933 126005163 + 9830132P13Rik lincRNA lincRNA MGP_AJ_T0064267.1 MGP_AJ_G0027935.1 mouse_genomes_project 3 144711252 144745836 - MGP_AJ_P0064267 Dnase2b protein_coding protein_coding MGP_AJ_T0064268.1 MGP_AJ_G0027935.1 mouse_genomes_project 3 144711252 144726843 - MGP_AJ_P0064268 Dnase2b protein_coding protein_coding MGP_AJ_T0014171.1 MGP_AJ_G0012266.1 mouse_genomes_project 3 89844326 89844463 + processed_pseudogene processed_pseudogene MGP_AJ_T0014220.1 MGP_AJ_G0012315.1 mouse_genomes_project 3 100002159 100002844 + processed_pseudogene processed_pseudogene MGP_AJ_T0014317.1 MGP_AJ_G0012412.1 mouse_genomes_project 3 130653316 130653704 - processed_pseudogene processed_pseudogene MGP_AJ_T0014060.1 MGP_AJ_G0012155.1 mouse_genomes_project 3 54997293 54997527 + processed_pseudogene processed_pseudogene MGP_AJ_T0014145.1 MGP_AJ_G0012240.1 mouse_genomes_project 3 79668533 79669032 + processed_pseudogene processed_pseudogene MGP_AJ_T0014241.1 MGP_AJ_G0012336.1 mouse_genomes_project 3 105974943 105975091 + processed_pseudogene processed_pseudogene MGP_AJ_T0060914.1 MGP_AJ_G0027185.1 mouse_genomes_project 3 52693409 53231407 - MGP_AJ_P0060914 Nbea protein_coding protein_coding MGP_AJ_T0060915.1 MGP_AJ_G0027185.1 mouse_genomes_project 3 52693413 52759529 - Nbea protein_coding processed_transcript MGP_AJ_T0060916.1 MGP_AJ_G0027185.1 mouse_genomes_project 3 52694734 52856150 - Nbea protein_coding processed_transcript MGP_AJ_T0060917.1 MGP_AJ_G0027185.1 mouse_genomes_project 3 52764946 52793407 - Nbea protein_coding retained_intron MGP_AJ_T0060918.1 MGP_AJ_G0027185.1 mouse_genomes_project 3 52847969 52857193 - Nbea protein_coding retained_intron MGP_AJ_T0060919.1 MGP_AJ_G0027185.1 mouse_genomes_project 3 52848878 52852738 - Nbea protein_coding retained_intron MGP_AJ_T0060921.1 MGP_AJ_G0027185.1 mouse_genomes_project 3 53029972 53037298 - Nbea protein_coding retained_intron MGP_AJ_T0060922.1 MGP_AJ_G0027185.1 mouse_genomes_project 3 53071835 53074260 - Nbea protein_coding retained_intron MGP_AJ_T0060923.1 MGP_AJ_G0027185.1 mouse_genomes_project 3 53087505 53090580 - Nbea protein_coding retained_intron MGP_AJ_T0060924.1 MGP_AJ_G0027185.1 mouse_genomes_project 3 53097326 53105717 - Nbea protein_coding retained_intron MGP_AJ_T0010549.1 MGP_AJ_G0008671.1 mouse_genomes_project 3 125587209 125587277 + Mir302c miRNA miRNA MGP_AJ_T0001387.1 MGP_AJ_G0001310.1 mouse_genomes_project 3 152359750 152361973 + TEC TEC MGP_AJ_T0001386.1 MGP_AJ_G0001309.1 mouse_genomes_project 3 151679026 151679937 - TEC TEC MGP_AJ_T0010556.1 MGP_AJ_G0008678.1 mouse_genomes_project 3 133171300 133171406 + Gm24048 miRNA miRNA MGP_AJ_T0014144.1 MGP_AJ_G0012239.1 mouse_genomes_project 3 78648303 78649088 - processed_pseudogene processed_pseudogene MGP_AJ_T0014024.1 MGP_AJ_G0012119.1 mouse_genomes_project 3 42793255 42793514 - processed_pseudogene processed_pseudogene MGP_AJ_T0010546.1 MGP_AJ_G0008668.1 mouse_genomes_project 3 120383640 120383759 - Mir760 miRNA miRNA MGP_AJ_T0064082.1 MGP_AJ_G0027894.1 mouse_genomes_project 3 139237979 139240331 - MGP_AJ_P0064082 Pdha2 protein_coding protein_coding MGP_AJ_T0062438.1 MGP_AJ_G0027543.1 mouse_genomes_project 3 93179522 93237744 + Arnt protein_coding retained_intron MGP_AJ_T0062439.1 MGP_AJ_G0027543.1 mouse_genomes_project 3 93179522 93241689 + MGP_AJ_P0062439 Arnt protein_coding protein_coding MGP_AJ_T0062440.1 MGP_AJ_G0027543.1 mouse_genomes_project 3 93179524 93243362 + MGP_AJ_P0062440 Arnt protein_coding protein_coding MGP_AJ_T0062441.1 MGP_AJ_G0027543.1 mouse_genomes_project 3 93179538 93243359 + MGP_AJ_P0062441 Arnt protein_coding protein_coding MGP_AJ_T0062442.1 MGP_AJ_G0027543.1 mouse_genomes_project 3 93179562 93241693 + MGP_AJ_P0062442 Arnt protein_coding protein_coding MGP_AJ_T0062443.1 MGP_AJ_G0027543.1 mouse_genomes_project 3 93179562 93205846 + MGP_AJ_P0062443 Arnt protein_coding protein_coding MGP_AJ_T0062444.1 MGP_AJ_G0027543.1 mouse_genomes_project 3 93179567 93243140 + MGP_AJ_P0062444 Arnt protein_coding unknown_likely_coding MGP_AJ_T0062445.1 MGP_AJ_G0027543.1 mouse_genomes_project 3 93179653 93238812 + Arnt protein_coding retained_intron MGP_AJ_T0062446.1 MGP_AJ_G0027543.1 mouse_genomes_project 3 93211265 93241689 + Arnt protein_coding retained_intron MGP_AJ_T0062447.1 MGP_AJ_G0027543.1 mouse_genomes_project 3 93219693 93226439 + Arnt protein_coding retained_intron MGP_AJ_T0062448.1 MGP_AJ_G0027543.1 mouse_genomes_project 3 93222314 93233433 + MGP_AJ_P0062448 Arnt protein_coding protein_coding MGP_AJ_T0062449.1 MGP_AJ_G0027543.1 mouse_genomes_project 3 93235526 93236528 + Arnt protein_coding retained_intron MGP_AJ_T0014067.1 MGP_AJ_G0012162.1 mouse_genomes_project 3 56522494 56527621 - processed_pseudogene processed_pseudogene MGP_AJ_T0061143.1 MGP_AJ_G0027241.1 mouse_genomes_project 3 64576271 64605670 + MGP_AJ_P0061143 Mlf1 protein_coding protein_coding MGP_AJ_T0061144.1 MGP_AJ_G0027241.1 mouse_genomes_project 3 64576299 64582565 + Mlf1 protein_coding processed_transcript MGP_AJ_T0061145.1 MGP_AJ_G0027241.1 mouse_genomes_project 3 64576316 64600971 + MGP_AJ_P0061145 Mlf1 protein_coding nonsense_mediated_decay MGP_AJ_T0061146.1 MGP_AJ_G0027241.1 mouse_genomes_project 3 64576322 64605675 + MGP_AJ_P0061146 Mlf1 protein_coding protein_coding MGP_AJ_T0063465.1 MGP_AJ_G0027781.1 mouse_genomes_project 3 115628553 115747043 + MGP_AJ_P0063465 Plppr5 protein_coding protein_coding MGP_AJ_T0063466.1 MGP_AJ_G0027781.1 mouse_genomes_project 3 115628944 115747043 + MGP_AJ_P0063466 Plppr5 protein_coding protein_coding MGP_AJ_T0007599.1 MGP_AJ_G0006218.1 mouse_genomes_project 3 80661875 80680904 - 1700028M03Rik lincRNA lincRNA MGP_AJ_T0063452.1 MGP_AJ_G0027777.1 mouse_genomes_project 3 114884993 114925871 + MGP_AJ_P0063452 protein_coding nonsense_mediated_decay MGP_AJ_T0063453.1 MGP_AJ_G0027777.1 mouse_genomes_project 3 114887136 114944553 + MGP_AJ_P0063453 protein_coding unknown_likely_coding MGP_AJ_T0063454.1 MGP_AJ_G0027777.1 mouse_genomes_project 3 114925791 114931584 + protein_coding retained_intron MGP_AJ_T0063455.1 MGP_AJ_G0027777.1 mouse_genomes_project 3 114926541 114940071 + protein_coding retained_intron MGP_AJ_T0063456.1 MGP_AJ_G0027777.1 mouse_genomes_project 3 114931572 114943831 + MGP_AJ_P0063456 protein_coding protein_coding MGP_AJ_T0061298.1 MGP_AJ_G0027279.1 mouse_genomes_project 3 76916499 76945844 - MGP_AJ_P0061298 protein_coding unknown_likely_coding MGP_AJ_T0061299.1 MGP_AJ_G0027279.1 mouse_genomes_project 3 76934568 76955655 - MGP_AJ_P0061299 protein_coding protein_coding MGP_AJ_T0061300.1 MGP_AJ_G0027279.1 mouse_genomes_project 3 76941631 76955650 - MGP_AJ_P0061300 protein_coding protein_coding MGP_AJ_T0061301.1 MGP_AJ_G0027279.1 mouse_genomes_project 3 76941760 76945875 - protein_coding processed_transcript MGP_AJ_T0062297.1 MGP_AJ_G0027521.1 mouse_genomes_project 3 92691107 92696527 + MGP_AJ_P0062297 Rfx5 protein_coding protein_coding MGP_AJ_T0062298.1 MGP_AJ_G0027521.1 mouse_genomes_project 3 92691140 92693560 + MGP_AJ_P0062298 Rfx5 protein_coding protein_coding MGP_AJ_T0062299.1 MGP_AJ_G0027521.1 mouse_genomes_project 3 92691140 92698592 + MGP_AJ_P0062299 Rfx5 protein_coding protein_coding MGP_AJ_T0062300.1 MGP_AJ_G0027521.1 mouse_genomes_project 3 92691141 92693344 + MGP_AJ_P0062300 Rfx5 protein_coding protein_coding MGP_AJ_T0062301.1 MGP_AJ_G0027521.1 mouse_genomes_project 3 92691167 92698380 + MGP_AJ_P0062301 Rfx5 protein_coding nonsense_mediated_decay MGP_AJ_T0062302.1 MGP_AJ_G0027521.1 mouse_genomes_project 3 92691192 92692734 + Rfx5 protein_coding processed_transcript MGP_AJ_T0062303.1 MGP_AJ_G0027521.1 mouse_genomes_project 3 92691192 92694179 + MGP_AJ_P0062303 Rfx5 protein_coding nonsense_mediated_decay MGP_AJ_T0062304.1 MGP_AJ_G0027521.1 mouse_genomes_project 3 92691202 92698380 + MGP_AJ_P0062304 Rfx5 protein_coding protein_coding MGP_AJ_T0062305.1 MGP_AJ_G0027521.1 mouse_genomes_project 3 92691227 92693422 + MGP_AJ_P0062305 Rfx5 protein_coding nonsense_mediated_decay MGP_AJ_T0062306.1 MGP_AJ_G0027521.1 mouse_genomes_project 3 92691233 92698377 + Rfx5 protein_coding retained_intron MGP_AJ_T0062307.1 MGP_AJ_G0027521.1 mouse_genomes_project 3 92691258 92698380 + MGP_AJ_P0062307 Rfx5 protein_coding protein_coding MGP_AJ_T0062308.1 MGP_AJ_G0027521.1 mouse_genomes_project 3 92691416 92693826 + MGP_AJ_P0062308 Rfx5 protein_coding protein_coding MGP_AJ_T0062309.1 MGP_AJ_G0027521.1 mouse_genomes_project 3 92691510 92693358 + MGP_AJ_P0062309 Rfx5 protein_coding protein_coding MGP_AJ_T0062310.1 MGP_AJ_G0027521.1 mouse_genomes_project 3 92691559 92693389 + MGP_AJ_P0062310 Rfx5 protein_coding protein_coding MGP_AJ_T0062311.1 MGP_AJ_G0027521.1 mouse_genomes_project 3 92691793 92696637 + MGP_AJ_P0062311 Rfx5 protein_coding protein_coding MGP_AJ_T0062312.1 MGP_AJ_G0027521.1 mouse_genomes_project 3 92692045 92698592 + MGP_AJ_P0062312 Rfx5 protein_coding protein_coding MGP_AJ_T0062313.1 MGP_AJ_G0027521.1 mouse_genomes_project 3 92692501 92693833 + Rfx5 protein_coding retained_intron MGP_AJ_T0098997.1 MGP_AJ_G0036974.1 mouse_genomes_project 3 102125984 102128414 - Gm43260 sense_intronic sense_intronic MGP_AJ_T0098979.1 MGP_AJ_G0036956.1 mouse_genomes_project 3 100061887 100064769 + 4632404M16Rik sense_intronic sense_intronic MGP_AJ_T0101130.1 MGP_AJ_G0039096.1 mouse_genomes_project 3 72862494 72862630 + Gm25846 snoRNA snoRNA MGP_AJ_T0013963.1 MGP_AJ_G0012058.1 mouse_genomes_project 3 19675629 19676399 + processed_pseudogene processed_pseudogene MGP_AJ_T0060341.1 MGP_AJ_G0027084.1 mouse_genomes_project 3 27771503 27802325 + MGP_AJ_P0060341 Lrriq4 protein_coding protein_coding MGP_AJ_T0060342.1 MGP_AJ_G0027084.1 mouse_genomes_project 3 27772404 27802193 + MGP_AJ_P0060342 Lrriq4 protein_coding protein_coding MGP_AJ_T0060343.1 MGP_AJ_G0027084.1 mouse_genomes_project 3 27774959 27802193 + MGP_AJ_P0060343 Lrriq4 protein_coding protein_coding MGP_AJ_T0001273.1 MGP_AJ_G0001197.1 mouse_genomes_project 3 95046570 95049873 + TEC TEC MGP_AJ_T0060970.1 MGP_AJ_G0027198.1 mouse_genomes_project 3 55677236 55702933 - MGP_AJ_P0060970 Erich6 protein_coding protein_coding MGP_AJ_T0060971.1 MGP_AJ_G0027198.1 mouse_genomes_project 3 55677246 55696407 - MGP_AJ_P0060971 Erich6 protein_coding unknown_likely_coding MGP_AJ_T0062723.1 MGP_AJ_G0027610.1 mouse_genomes_project 3 95966661 95968103 + MGP_AJ_P0062723 Adam30 protein_coding protein_coding MGP_AJ_T0062724.1 MGP_AJ_G0027610.1 mouse_genomes_project 3 95966691 95970201 + MGP_AJ_P0062724 Adam30 protein_coding protein_coding MGP_AJ_T0007600.1 MGP_AJ_G0006219.1 mouse_genomes_project 3 81463346 81486521 - 4930565D16Rik lincRNA lincRNA MGP_AJ_T0063179.1 MGP_AJ_G0027721.1 mouse_genomes_project 3 106037887 106042232 - MGP_AJ_P0063179 protein_coding protein_coding MGP_AJ_T0063180.1 MGP_AJ_G0027721.1 mouse_genomes_project 3 106040899 106042260 - protein_coding retained_intron MGP_AJ_T0063181.1 MGP_AJ_G0027721.1 mouse_genomes_project 3 106041320 106042260 - protein_coding retained_intron MGP_AJ_T0062952.1 MGP_AJ_G0027663.1 mouse_genomes_project 3 101863659 101914948 + MGP_AJ_P0062952 Rsbn1 protein_coding protein_coding MGP_AJ_T0062953.1 MGP_AJ_G0027663.1 mouse_genomes_project 3 101863690 101914971 + MGP_AJ_P0062953 Rsbn1 protein_coding protein_coding MGP_AJ_T0062954.1 MGP_AJ_G0027663.1 mouse_genomes_project 3 101864106 101912206 + MGP_AJ_P0062954 Rsbn1 protein_coding nonsense_mediated_decay MGP_AJ_T0062955.1 MGP_AJ_G0027663.1 mouse_genomes_project 3 101877490 101908471 + MGP_AJ_P0062955 Rsbn1 protein_coding protein_coding MGP_AJ_T0062530.1 MGP_AJ_G0027557.1 mouse_genomes_project 3 93637360 93645410 - MGP_AJ_P0062530 BC028528 protein_coding protein_coding MGP_AJ_T0062531.1 MGP_AJ_G0027557.1 mouse_genomes_project 3 93637364 93645360 - MGP_AJ_P0062531 BC028528 protein_coding protein_coding MGP_AJ_T0062532.1 MGP_AJ_G0027557.1 mouse_genomes_project 3 93638377 93645335 - MGP_AJ_P0062532 BC028528 protein_coding protein_coding MGP_AJ_T0062533.1 MGP_AJ_G0027557.1 mouse_genomes_project 3 93641363 93645356 - BC028528 protein_coding processed_transcript MGP_AJ_T0062534.1 MGP_AJ_G0027557.1 mouse_genomes_project 3 93641850 93645386 - BC028528 protein_coding retained_intron MGP_AJ_T0014014.1 MGP_AJ_G0012109.1 mouse_genomes_project 3 39408431 39408579 - processed_pseudogene processed_pseudogene MGP_AJ_T0062194.1 MGP_AJ_G0027490.1 mouse_genomes_project 3 90461455 90462686 + MGP_AJ_P0062194 Lce3b protein_coding protein_coding MGP_AJ_T0060078.1 MGP_AJ_G0027023.1 mouse_genomes_project 3 7116318 7128020 + MGP_AJ_P0060078 Fabp5 protein_coding protein_coding MGP_AJ_T0060079.1 MGP_AJ_G0027023.1 mouse_genomes_project 3 7116375 7127748 + Fabp5 protein_coding retained_intron MGP_AJ_T0099847.1 MGP_AJ_G0037813.1 mouse_genomes_project 3 86100039 86100201 + Gm23054 snRNA snRNA MGP_AJ_T0004220.1 MGP_AJ_G0003713.1 mouse_genomes_project 3 30980899 30981590 + Gm43140 antisense antisense MGP_AJ_T0018014.1 MGP_AJ_G0015503.1 mouse_genomes_project 3 133875846 133882881 - 4933401H06Rik processed_transcript macro_lncRNA MGP_AJ_T0018015.1 MGP_AJ_G0015503.1 mouse_genomes_project 3 133875949 133882881 - 4933401H06Rik processed_transcript antisense MGP_AJ_T0060714.1 MGP_AJ_G0027148.1 mouse_genomes_project 3 38783592 38799971 + MGP_AJ_P0060714 D3Ertd751e protein_coding protein_coding MGP_AJ_T0060715.1 MGP_AJ_G0027148.1 mouse_genomes_project 3 38783641 38797362 + MGP_AJ_P0060715 D3Ertd751e protein_coding protein_coding MGP_AJ_T0060716.1 MGP_AJ_G0027148.1 mouse_genomes_project 3 38783644 38799961 + MGP_AJ_P0060716 D3Ertd751e protein_coding protein_coding MGP_AJ_T0060717.1 MGP_AJ_G0027148.1 mouse_genomes_project 3 38783647 38800420 + MGP_AJ_P0060717 D3Ertd751e protein_coding nonsense_mediated_decay MGP_AJ_T0060718.1 MGP_AJ_G0027148.1 mouse_genomes_project 3 38783648 38799970 + MGP_AJ_P0060718 D3Ertd751e protein_coding protein_coding MGP_AJ_T0060719.1 MGP_AJ_G0027148.1 mouse_genomes_project 3 38783648 38799970 + MGP_AJ_P0060719 D3Ertd751e protein_coding protein_coding MGP_AJ_T0060720.1 MGP_AJ_G0027148.1 mouse_genomes_project 3 38783684 38799970 + MGP_AJ_P0060720 D3Ertd751e protein_coding protein_coding MGP_AJ_T0060721.1 MGP_AJ_G0027148.1 mouse_genomes_project 3 38783686 38784951 + D3Ertd751e protein_coding retained_intron MGP_AJ_T0060722.1 MGP_AJ_G0027148.1 mouse_genomes_project 3 38783693 38798691 + MGP_AJ_P0060722 D3Ertd751e protein_coding protein_coding MGP_AJ_T0060723.1 MGP_AJ_G0027148.1 mouse_genomes_project 3 38783756 38794815 + MGP_AJ_P0060723 D3Ertd751e protein_coding protein_coding MGP_AJ_T0060724.1 MGP_AJ_G0027148.1 mouse_genomes_project 3 38785700 38797186 + MGP_AJ_P0060724 D3Ertd751e protein_coding protein_coding MGP_AJ_T0060725.1 MGP_AJ_G0027148.1 mouse_genomes_project 3 38787515 38797202 + MGP_AJ_P0060725 D3Ertd751e protein_coding protein_coding MGP_AJ_T0060726.1 MGP_AJ_G0027148.1 mouse_genomes_project 3 38787745 38799988 + MGP_AJ_P0060726 D3Ertd751e protein_coding nonsense_mediated_decay MGP_AJ_T0060727.1 MGP_AJ_G0027148.1 mouse_genomes_project 3 38789613 38797537 + D3Ertd751e protein_coding retained_intron MGP_AJ_T0014164.1 MGP_AJ_G0012259.1 mouse_genomes_project 3 87948783 87948936 - processed_pseudogene processed_pseudogene MGP_AJ_T0014259.1 MGP_AJ_G0012354.1 mouse_genomes_project 3 110351210 110352075 - processed_pseudogene processed_pseudogene MGP_AJ_T0064214.1 MGP_AJ_G0027922.1 mouse_genomes_project 3 144056512 144058880 + Bcl10 protein_coding retained_intron MGP_AJ_T0064215.1 MGP_AJ_G0027922.1 mouse_genomes_project 3 144057970 144068053 + MGP_AJ_P0064215 Bcl10 protein_coding protein_coding MGP_AJ_T0064216.1 MGP_AJ_G0027922.1 mouse_genomes_project 3 144058065 144061640 + Bcl10 protein_coding processed_transcript MGP_AJ_T0001232.1 MGP_AJ_G0001156.1 mouse_genomes_project 3 60654177 60654663 + TEC TEC MGP_AJ_T0010510.1 MGP_AJ_G0008632.1 mouse_genomes_project 3 37633745 37633817 + Gm23810 miRNA miRNA MGP_AJ_T0060042.1 MGP_AJ_G0027014.1 mouse_genomes_project 3 4604961 4653774 + MGP_AJ_P0060042 Zc2hc1a protein_coding protein_coding MGP_AJ_T0060043.1 MGP_AJ_G0027014.1 mouse_genomes_project 3 4604964 4652016 + MGP_AJ_P0060043 Zc2hc1a protein_coding protein_coding MGP_AJ_T0060044.1 MGP_AJ_G0027014.1 mouse_genomes_project 3 4639294 4651441 + Zc2hc1a protein_coding retained_intron MGP_AJ_T0062783.1 MGP_AJ_G0027629.1 mouse_genomes_project 3 98843932 98853358 + MGP_AJ_P0062783 Trim45 protein_coding protein_coding MGP_AJ_T0062784.1 MGP_AJ_G0027629.1 mouse_genomes_project 3 98844205 98855667 + MGP_AJ_P0062784 Trim45 protein_coding protein_coding MGP_AJ_T0062785.1 MGP_AJ_G0027629.1 mouse_genomes_project 3 98844223 98858575 + MGP_AJ_P0062785 Trim45 protein_coding protein_coding MGP_AJ_T0062786.1 MGP_AJ_G0027629.1 mouse_genomes_project 3 98844650 98853713 + MGP_AJ_P0062786 Trim45 protein_coding protein_coding MGP_AJ_T0063510.1 MGP_AJ_G0027788.1 mouse_genomes_project 3 119497768 119530373 + MGP_AJ_P0063510 Cnn3 protein_coding protein_coding MGP_AJ_T0063511.1 MGP_AJ_G0027788.1 mouse_genomes_project 3 119497816 119530365 + Cnn3 protein_coding retained_intron MGP_AJ_T0063512.1 MGP_AJ_G0027788.1 mouse_genomes_project 3 119498053 119529978 + MGP_AJ_P0063512 Cnn3 protein_coding protein_coding MGP_AJ_T0063513.1 MGP_AJ_G0027788.1 mouse_genomes_project 3 119498565 119522672 + Cnn3 protein_coding processed_transcript MGP_AJ_T0063514.1 MGP_AJ_G0027788.1 mouse_genomes_project 3 119522079 119529313 + MGP_AJ_P0063514 Cnn3 protein_coding protein_coding MGP_AJ_T0063515.1 MGP_AJ_G0027788.1 mouse_genomes_project 3 119523285 119529524 + Cnn3 protein_coding retained_intron MGP_AJ_T0063516.1 MGP_AJ_G0027788.1 mouse_genomes_project 3 119529253 119530114 + MGP_AJ_P0063516 Cnn3 protein_coding protein_coding MGP_AJ_T0063517.1 MGP_AJ_G0027788.1 mouse_genomes_project 3 119529282 119530116 + MGP_AJ_P0063517 Cnn3 protein_coding protein_coding MGP_AJ_T0062823.1 MGP_AJ_G0027640.1 mouse_genomes_project 3 100086340 100095032 - MGP_AJ_P0062823 Vangl1 protein_coding protein_coding MGP_AJ_T0062824.1 MGP_AJ_G0027640.1 mouse_genomes_project 3 100086399 100132933 - MGP_AJ_P0062824 Vangl1 protein_coding protein_coding MGP_AJ_T0062825.1 MGP_AJ_G0027640.1 mouse_genomes_project 3 100091285 100095075 - Vangl1 protein_coding retained_intron MGP_AJ_T0062826.1 MGP_AJ_G0027640.1 mouse_genomes_project 3 100091462 100094043 - Vangl1 protein_coding processed_transcript MGP_AJ_T0062827.1 MGP_AJ_G0027640.1 mouse_genomes_project 3 100112515 100126157 - MGP_AJ_P0062827 Vangl1 protein_coding protein_coding MGP_AJ_T0062828.1 MGP_AJ_G0027640.1 mouse_genomes_project 3 100125074 100132287 - MGP_AJ_P0062828 Vangl1 protein_coding protein_coding MGP_AJ_T0061952.1 MGP_AJ_G0027410.1 mouse_genomes_project 3 87029355 87039652 + MGP_AJ_P0061952 Ube2q1 protein_coding protein_coding MGP_AJ_T0061953.1 MGP_AJ_G0027410.1 mouse_genomes_project 3 87029503 87033063 + Ube2q1 protein_coding retained_intron MGP_AJ_T0061332.1 MGP_AJ_G0027286.1 mouse_genomes_project 3 79070185 79087495 + Asic5 protein_coding processed_transcript MGP_AJ_T0061333.1 MGP_AJ_G0027286.1 mouse_genomes_project 3 79083534 79108996 + MGP_AJ_P0061333 Asic5 protein_coding protein_coding MGP_AJ_T0001313.1 MGP_AJ_G0001237.1 mouse_genomes_project 3 121297377 121299974 - TEC TEC MGP_AJ_T0099845.1 MGP_AJ_G0037811.1 mouse_genomes_project 3 83503064 83503171 + Gm25039 snRNA snRNA MGP_AJ_T0011548.1 MGP_AJ_G0009670.1 mouse_genomes_project 3 101012508 101012808 + Gm23820 misc_RNA misc_RNA MGP_AJ_T0017973.1 MGP_AJ_G0015490.1 mouse_genomes_project 3 98333501 98335962 + 4930406D18Rik processed_transcript retained_intron MGP_AJ_T0017974.1 MGP_AJ_G0015490.1 mouse_genomes_project 3 98333535 98345010 + 4930406D18Rik processed_transcript lincRNA MGP_AJ_T0014026.1 MGP_AJ_G0012121.1 mouse_genomes_project 3 43657706 43657948 + processed_pseudogene processed_pseudogene MGP_AJ_T0060255.1 MGP_AJ_G0027069.1 mouse_genomes_project 3 24311170 24374609 + MGP_AJ_P0060255 Nceh1 protein_coding protein_coding MGP_AJ_T0060256.1 MGP_AJ_G0027069.1 mouse_genomes_project 3 24311209 24355972 + Nceh1 protein_coding retained_intron MGP_AJ_T0060257.1 MGP_AJ_G0027069.1 mouse_genomes_project 3 24311209 24411502 + MGP_AJ_P0060257 Nceh1 protein_coding protein_coding MGP_AJ_T0060258.1 MGP_AJ_G0027069.1 mouse_genomes_project 3 24311209 24352324 + MGP_AJ_P0060258 Nceh1 protein_coding nonsense_mediated_decay MGP_AJ_T0060259.1 MGP_AJ_G0027069.1 mouse_genomes_project 3 24316657 24369234 + Nceh1 protein_coding processed_transcript MGP_AJ_T0010550.1 MGP_AJ_G0008672.1 mouse_genomes_project 3 125587342 125587411 + Mir302a miRNA miRNA MGP_AJ_T0062097.1 MGP_AJ_G0027431.1 mouse_genomes_project 3 87791144 87802263 - MGP_AJ_P0062097 Chtop protein_coding protein_coding MGP_AJ_T0062098.1 MGP_AJ_G0027431.1 mouse_genomes_project 3 87791144 87802265 - MGP_AJ_P0062098 Chtop protein_coding protein_coding MGP_AJ_T0062099.1 MGP_AJ_G0027431.1 mouse_genomes_project 3 87791144 87802264 - MGP_AJ_P0062099 Chtop protein_coding protein_coding MGP_AJ_T0062100.1 MGP_AJ_G0027431.1 mouse_genomes_project 3 87791146 87802275 - MGP_AJ_P0062100 Chtop protein_coding protein_coding MGP_AJ_T0062101.1 MGP_AJ_G0027431.1 mouse_genomes_project 3 87791153 87802311 - MGP_AJ_P0062101 Chtop protein_coding protein_coding MGP_AJ_T0062102.1 MGP_AJ_G0027431.1 mouse_genomes_project 3 87791825 87802287 - MGP_AJ_P0062102 Chtop protein_coding protein_coding MGP_AJ_T0062103.1 MGP_AJ_G0027431.1 mouse_genomes_project 3 87792026 87802298 - MGP_AJ_P0062103 Chtop protein_coding protein_coding MGP_AJ_T0062104.1 MGP_AJ_G0027431.1 mouse_genomes_project 3 87794831 87802289 - MGP_AJ_P0062104 Chtop protein_coding protein_coding MGP_AJ_T0062105.1 MGP_AJ_G0027431.1 mouse_genomes_project 3 87795804 87801824 - MGP_AJ_P0062105 Chtop protein_coding protein_coding MGP_AJ_T0001117.1 MGP_AJ_G0001043.1 mouse_genomes_project 3 15398720 15403550 + TEC TEC MGP_AJ_T0014194.1 MGP_AJ_G0012289.1 mouse_genomes_project 3 93647567 93651087 + processed_pseudogene processed_pseudogene MGP_AJ_T0064422.1 MGP_AJ_G0027954.1 mouse_genomes_project 3 151015675 151182217 - MGP_AJ_P0064422 St6galnac5 protein_coding protein_coding MGP_AJ_T0064423.1 MGP_AJ_G0027954.1 mouse_genomes_project 3 151175247 151182023 - St6galnac5 protein_coding processed_transcript MGP_AJ_T0014166.1 MGP_AJ_G0012261.1 mouse_genomes_project 3 88021453 88022356 - processed_pseudogene processed_pseudogene MGP_AJ_T0099808.1 MGP_AJ_G0037774.1 mouse_genomes_project 3 13946675 13946739 - Gm26485 snRNA snRNA MGP_AJ_T0062586.1 MGP_AJ_G0027571.1 mouse_genomes_project 3 94000607 94001193 - MGP_AJ_P0062586 Hist2h2aa1 protein_coding protein_coding MGP_AJ_T0004261.1 MGP_AJ_G0003744.1 mouse_genomes_project 3 76962732 76990215 - Gm36569 antisense antisense MGP_AJ_T0014272.1 MGP_AJ_G0012367.1 mouse_genomes_project 3 114555392 114555834 - processed_pseudogene processed_pseudogene MGP_AJ_T0014769.1 MGP_AJ_G0012864.1 mouse_genomes_project 4 123444223 123445166 - processed_pseudogene processed_pseudogene MGP_AJ_T0101269.1 MGP_AJ_G0039235.1 mouse_genomes_project 4 151474878 151475010 + Gm25880 snoRNA snoRNA MGP_AJ_T0098677.1 MGP_AJ_G0036661.1 mouse_genomes_project 4 45453499 45453611 - Gm24573 rRNA rRNA MGP_AJ_T0066350.1 MGP_AJ_G0028396.1 mouse_genomes_project 4 85608567 85609260 + MGP_AJ_P0066350 protein_coding protein_coding MGP_AJ_T0066681.1 MGP_AJ_G0028478.1 mouse_genomes_project 4 101959869 102035656 + MGP_AJ_P0066681 Plpp3 protein_coding protein_coding MGP_AJ_T0069302.1 MGP_AJ_G0029087.1 mouse_genomes_project 4 145662737 145710435 - MGP_AJ_P0069302 Ptchd2 protein_coding protein_coding MGP_AJ_T0069303.1 MGP_AJ_G0029087.1 mouse_genomes_project 4 145680667 145683296 - Ptchd2 protein_coding retained_intron MGP_AJ_T0069304.1 MGP_AJ_G0029087.1 mouse_genomes_project 4 145682335 145683776 - Ptchd2 protein_coding processed_transcript MGP_AJ_T0067645.1 MGP_AJ_G0028680.1 mouse_genomes_project 4 117529591 117569137 - MGP_AJ_P0067645 Zmpste24 protein_coding protein_coding MGP_AJ_T0067646.1 MGP_AJ_G0028680.1 mouse_genomes_project 4 117538415 117548654 - Zmpste24 protein_coding processed_transcript MGP_AJ_T0067647.1 MGP_AJ_G0028680.1 mouse_genomes_project 4 117553851 117566594 - MGP_AJ_P0067647 Zmpste24 protein_coding protein_coding MGP_AJ_T0101212.1 MGP_AJ_G0039178.1 mouse_genomes_project 4 51928425 51928746 - Gm25419 snoRNA snoRNA MGP_AJ_T0069065.1 MGP_AJ_G0029003.1 mouse_genomes_project 4 138135601 138151489 + MGP_AJ_P0069065 Fam131c protein_coding protein_coding MGP_AJ_T0014789.1 MGP_AJ_G0012884.1 mouse_genomes_project 4 130934044 130934305 - processed_pseudogene processed_pseudogene MGP_AJ_T0066820.1 MGP_AJ_G0028505.1 mouse_genomes_project 4 104605732 104677554 + MGP_AJ_P0066820 Lrp8 protein_coding nonsense_mediated_decay MGP_AJ_T0066821.1 MGP_AJ_G0028505.1 mouse_genomes_project 4 104605748 104676203 + MGP_AJ_P0066821 Lrp8 protein_coding protein_coding MGP_AJ_T0066822.1 MGP_AJ_G0028505.1 mouse_genomes_project 4 104605785 104677286 + MGP_AJ_P0066822 Lrp8 protein_coding protein_coding MGP_AJ_T0066823.1 MGP_AJ_G0028505.1 mouse_genomes_project 4 104605884 104675739 + MGP_AJ_P0066823 Lrp8 protein_coding protein_coding MGP_AJ_T0066824.1 MGP_AJ_G0028505.1 mouse_genomes_project 4 104605884 104676203 + MGP_AJ_P0066824 Lrp8 protein_coding protein_coding MGP_AJ_T0066825.1 MGP_AJ_G0028505.1 mouse_genomes_project 4 104606314 104654730 + Lrp8 protein_coding processed_transcript MGP_AJ_T0066826.1 MGP_AJ_G0028505.1 mouse_genomes_project 4 104606723 104676203 + Lrp8 protein_coding processed_transcript MGP_AJ_T0066827.1 MGP_AJ_G0028505.1 mouse_genomes_project 4 104626611 104676203 + Lrp8 protein_coding processed_transcript MGP_AJ_T0066828.1 MGP_AJ_G0028505.1 mouse_genomes_project 4 104634408 104640669 + Lrp8 protein_coding retained_intron MGP_AJ_T0066829.1 MGP_AJ_G0028505.1 mouse_genomes_project 4 104634428 104680227 + MGP_AJ_P0066829 Lrp8 protein_coding protein_coding MGP_AJ_T0066830.1 MGP_AJ_G0028505.1 mouse_genomes_project 4 104649569 104651664 + Lrp8 protein_coding retained_intron MGP_AJ_T0066831.1 MGP_AJ_G0028505.1 mouse_genomes_project 4 104653495 104660230 + Lrp8 protein_coding processed_transcript MGP_AJ_T0007819.1 MGP_AJ_G0006386.1 mouse_genomes_project 4 16587680 16596346 - 4930598A11Rik lincRNA lincRNA MGP_AJ_T0010627.1 MGP_AJ_G0008749.1 mouse_genomes_project 4 130135816 130135942 - Gm23158 miRNA miRNA MGP_AJ_T0064804.1 MGP_AJ_G0028027.1 mouse_genomes_project 4 11417565 11459013 + MGP_AJ_P0064804 protein_coding protein_coding MGP_AJ_T0068998.1 MGP_AJ_G0028988.1 mouse_genomes_project 4 137493336 137522116 - MGP_AJ_P0068998 Padi4 protein_coding protein_coding MGP_AJ_T0068999.1 MGP_AJ_G0028988.1 mouse_genomes_project 4 137499745 137505364 - Padi4 protein_coding processed_transcript MGP_AJ_T0069000.1 MGP_AJ_G0028988.1 mouse_genomes_project 4 137503341 137509216 - Padi4 protein_coding processed_transcript MGP_AJ_T0069001.1 MGP_AJ_G0028988.1 mouse_genomes_project 4 137505532 137509209 - Padi4 protein_coding processed_transcript MGP_AJ_T0014673.1 MGP_AJ_G0012768.1 mouse_genomes_project 4 96193027 96193424 + processed_pseudogene processed_pseudogene MGP_AJ_T0069261.1 MGP_AJ_G0029077.1 mouse_genomes_project 4 145402770 145404188 + MGP_AJ_P0069261 Nppb protein_coding protein_coding MGP_AJ_T0067888.1 MGP_AJ_G0028744.1 mouse_genomes_project 4 123324503 123357117 + MGP_AJ_P0067888 Psmb2 protein_coding protein_coding MGP_AJ_T0067889.1 MGP_AJ_G0028744.1 mouse_genomes_project 4 123324552 123334131 + Psmb2 protein_coding processed_transcript MGP_AJ_T0067890.1 MGP_AJ_G0028744.1 mouse_genomes_project 4 123324577 123355166 + Psmb2 protein_coding processed_transcript MGP_AJ_T0066124.1 MGP_AJ_G0028347.1 mouse_genomes_project 4 70520129 70591477 - MGP_AJ_P0066124 Rasef protein_coding protein_coding MGP_AJ_T0066125.1 MGP_AJ_G0028347.1 mouse_genomes_project 4 70520129 70591584 - MGP_AJ_P0066125 Rasef protein_coding protein_coding MGP_AJ_T0067572.1 MGP_AJ_G0028662.1 mouse_genomes_project 4 115999098 116036348 + MGP_AJ_P0067572 Foxj3 protein_coding protein_coding MGP_AJ_T0067573.1 MGP_AJ_G0028662.1 mouse_genomes_project 4 116001759 116090788 + MGP_AJ_P0067573 Foxj3 protein_coding protein_coding MGP_AJ_T0067574.1 MGP_AJ_G0028662.1 mouse_genomes_project 4 116001783 116051446 + MGP_AJ_P0067574 Foxj3 protein_coding protein_coding MGP_AJ_T0067575.1 MGP_AJ_G0028662.1 mouse_genomes_project 4 116001786 116090788 + MGP_AJ_P0067575 Foxj3 protein_coding protein_coding MGP_AJ_T0067576.1 MGP_AJ_G0028662.1 mouse_genomes_project 4 116001790 116063927 + Foxj3 protein_coding retained_intron MGP_AJ_T0067577.1 MGP_AJ_G0028662.1 mouse_genomes_project 4 116001796 116051455 + MGP_AJ_P0067577 Foxj3 protein_coding protein_coding MGP_AJ_T0067578.1 MGP_AJ_G0028662.1 mouse_genomes_project 4 116001811 116025565 + Foxj3 protein_coding retained_intron MGP_AJ_T0067579.1 MGP_AJ_G0028662.1 mouse_genomes_project 4 116001883 116036375 + MGP_AJ_P0067579 Foxj3 protein_coding protein_coding MGP_AJ_T0067580.1 MGP_AJ_G0028662.1 mouse_genomes_project 4 116002629 116036476 + MGP_AJ_P0067580 Foxj3 protein_coding protein_coding MGP_AJ_T0067581.1 MGP_AJ_G0028662.1 mouse_genomes_project 4 116082750 116084821 + Foxj3 protein_coding processed_transcript MGP_AJ_T0001410.1 MGP_AJ_G0001333.1 mouse_genomes_project 4 38150296 38150774 - TEC TEC MGP_AJ_T0004522.1 MGP_AJ_G0003928.1 mouse_genomes_project 4 115584111 115584821 - Gm12867 antisense antisense MGP_AJ_T0011587.1 MGP_AJ_G0009709.1 mouse_genomes_project 4 149757669 149758005 - Gm27500 misc_RNA misc_RNA MGP_AJ_T0066936.1 MGP_AJ_G0028527.1 mouse_genomes_project 4 105653266 105654895 + MGP_AJ_P0066936 Kti12 protein_coding protein_coding MGP_AJ_T0066570.1 MGP_AJ_G0028455.1 mouse_genomes_project 4 98166417 98214705 + MGP_AJ_P0066570 Ak4 protein_coding protein_coding MGP_AJ_T0066571.1 MGP_AJ_G0028455.1 mouse_genomes_project 4 98166834 98209280 + MGP_AJ_P0066571 Ak4 protein_coding protein_coding MGP_AJ_T0066572.1 MGP_AJ_G0028455.1 mouse_genomes_project 4 98166861 98211701 + MGP_AJ_P0066572 Ak4 protein_coding protein_coding MGP_AJ_T0066573.1 MGP_AJ_G0028455.1 mouse_genomes_project 4 98167625 98212393 + Ak4 protein_coding processed_transcript MGP_AJ_T0066574.1 MGP_AJ_G0028455.1 mouse_genomes_project 4 98195933 98212492 + MGP_AJ_P0066574 Ak4 protein_coding protein_coding MGP_AJ_T0004590.1 MGP_AJ_G0003981.1 mouse_genomes_project 4 146388417 146389855 - Gm13205 antisense antisense MGP_AJ_T0101233.1 MGP_AJ_G0039199.1 mouse_genomes_project 4 87792570 87792702 - Gm25244 snoRNA snoRNA MGP_AJ_T0014607.1 MGP_AJ_G0012702.1 mouse_genomes_project 4 72087846 72089026 + processed_pseudogene processed_pseudogene MGP_AJ_T0014570.1 MGP_AJ_G0012665.1 mouse_genomes_project 4 54109794 54111783 - processed_pseudogene processed_pseudogene MGP_AJ_T0066781.1 MGP_AJ_G0028499.1 mouse_genomes_project 4 104063378 104090505 + MGP_AJ_P0066781 Hspb11 protein_coding protein_coding MGP_AJ_T0066782.1 MGP_AJ_G0028499.1 mouse_genomes_project 4 104063683 104075460 + Hspb11 protein_coding processed_transcript MGP_AJ_T0066783.1 MGP_AJ_G0028499.1 mouse_genomes_project 4 104063688 104090606 + MGP_AJ_P0066783 Hspb11 protein_coding protein_coding MGP_AJ_T0066784.1 MGP_AJ_G0028499.1 mouse_genomes_project 4 104063710 104090596 + MGP_AJ_P0066784 Hspb11 protein_coding protein_coding MGP_AJ_T0066785.1 MGP_AJ_G0028499.1 mouse_genomes_project 4 104072997 104090600 + Hspb11 protein_coding processed_transcript MGP_AJ_T0068155.1 MGP_AJ_G0028800.1 mouse_genomes_project 4 126672529 126711035 + MGP_AJ_P0068155 Adgrb2 protein_coding protein_coding MGP_AJ_T0068156.1 MGP_AJ_G0028800.1 mouse_genomes_project 4 126672812 126711035 + MGP_AJ_P0068156 Adgrb2 protein_coding protein_coding MGP_AJ_T0068157.1 MGP_AJ_G0028800.1 mouse_genomes_project 4 126672916 126711035 + MGP_AJ_P0068157 Adgrb2 protein_coding protein_coding MGP_AJ_T0068158.1 MGP_AJ_G0028800.1 mouse_genomes_project 4 126679701 126711035 + MGP_AJ_P0068158 Adgrb2 protein_coding protein_coding MGP_AJ_T0068159.1 MGP_AJ_G0028800.1 mouse_genomes_project 4 126679702 126710741 + MGP_AJ_P0068159 Adgrb2 protein_coding protein_coding MGP_AJ_T0068160.1 MGP_AJ_G0028800.1 mouse_genomes_project 4 126679702 126710741 + MGP_AJ_P0068160 Adgrb2 protein_coding protein_coding MGP_AJ_T0068161.1 MGP_AJ_G0028800.1 mouse_genomes_project 4 126679702 126710741 + MGP_AJ_P0068161 Adgrb2 protein_coding protein_coding MGP_AJ_T0068162.1 MGP_AJ_G0028800.1 mouse_genomes_project 4 126698262 126700255 + Adgrb2 protein_coding retained_intron MGP_AJ_T0068163.1 MGP_AJ_G0028800.1 mouse_genomes_project 4 126698455 126700935 + Adgrb2 protein_coding retained_intron MGP_AJ_T0068164.1 MGP_AJ_G0028800.1 mouse_genomes_project 4 126700589 126700966 + Adgrb2 protein_coding retained_intron MGP_AJ_T0068165.1 MGP_AJ_G0028800.1 mouse_genomes_project 4 126702028 126702972 + Adgrb2 protein_coding retained_intron MGP_AJ_T0068166.1 MGP_AJ_G0028800.1 mouse_genomes_project 4 126707179 126709966 + Adgrb2 protein_coding retained_intron MGP_AJ_T0068167.1 MGP_AJ_G0028800.1 mouse_genomes_project 4 126709517 126710833 + Adgrb2 protein_coding retained_intron MGP_AJ_T0067208.1 MGP_AJ_G0028583.1 mouse_genomes_project 4 112567884 112568803 + MGP_AJ_P0067208 1700042G07Rik protein_coding protein_coding MGP_AJ_T0001435.1 MGP_AJ_G0001356.1 mouse_genomes_project 4 153628425 153632539 - TEC TEC MGP_AJ_T0069653.1 MGP_AJ_G0029148.1 mouse_genomes_project 4 150038223 150126403 + Nphp4 protein_coding processed_transcript MGP_AJ_T0069654.1 MGP_AJ_G0029148.1 mouse_genomes_project 4 150039417 150126132 + MGP_AJ_P0069654 Nphp4 protein_coding unknown_likely_coding MGP_AJ_T0069655.1 MGP_AJ_G0029148.1 mouse_genomes_project 4 150039695 150051978 + Nphp4 protein_coding processed_transcript MGP_AJ_T0069656.1 MGP_AJ_G0029148.1 mouse_genomes_project 4 150049882 150059782 + Nphp4 protein_coding processed_transcript MGP_AJ_T0069657.1 MGP_AJ_G0029148.1 mouse_genomes_project 4 150064454 150079753 + Nphp4 protein_coding processed_transcript MGP_AJ_T0068590.1 MGP_AJ_G0028890.1 mouse_genomes_project 4 131141388 131156616 - MGP_AJ_P0068590 Sepn1 protein_coding protein_coding MGP_AJ_T0068591.1 MGP_AJ_G0028890.1 mouse_genomes_project 4 131143075 131145469 - Sepn1 protein_coding processed_transcript MGP_AJ_T0007988.1 MGP_AJ_G0006520.1 mouse_genomes_project 4 128820173 128822993 + Gm28874 lincRNA lincRNA MGP_AJ_T0069213.1 MGP_AJ_G0029064.1 mouse_genomes_project 4 141772650 141796869 - MGP_AJ_P0069213 Gm436 protein_coding protein_coding MGP_AJ_T0101807.1 MGP_AJ_G0039715.1 mouse_genomes_project 4 128448064 128448586 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0068107.1 MGP_AJ_G0028791.1 mouse_genomes_project 4 126285754 126291659 - MGP_AJ_P0068107 Dcdc2b protein_coding protein_coding MGP_AJ_T0068108.1 MGP_AJ_G0028791.1 mouse_genomes_project 4 126285952 126286672 - Dcdc2b protein_coding retained_intron MGP_AJ_T0068109.1 MGP_AJ_G0028791.1 mouse_genomes_project 4 126286171 126291656 - MGP_AJ_P0068109 Dcdc2b protein_coding protein_coding MGP_AJ_T0014688.1 MGP_AJ_G0012783.1 mouse_genomes_project 4 100743854 100744095 - processed_pseudogene processed_pseudogene MGP_AJ_T0069702.1 MGP_AJ_G0029157.1 mouse_genomes_project 4 151746368 151760734 + MGP_AJ_P0069702 Wrap73 protein_coding protein_coding MGP_AJ_T0069703.1 MGP_AJ_G0029157.1 mouse_genomes_project 4 151746405 151760734 + Wrap73 protein_coding processed_transcript MGP_AJ_T0069704.1 MGP_AJ_G0029157.1 mouse_genomes_project 4 151755814 151759198 + MGP_AJ_P0069704 Wrap73 protein_coding protein_coding MGP_AJ_T0069705.1 MGP_AJ_G0029157.1 mouse_genomes_project 4 151759132 151771314 + Wrap73 protein_coding processed_transcript MGP_AJ_T0069832.1 MGP_AJ_G0029179.1 mouse_genomes_project 4 153088494 153089796 + Tmem52 protein_coding retained_intron MGP_AJ_T0069833.1 MGP_AJ_G0029179.1 mouse_genomes_project 4 153088494 153090239 + MGP_AJ_P0069833 Tmem52 protein_coding protein_coding MGP_AJ_T0069834.1 MGP_AJ_G0029179.1 mouse_genomes_project 4 153088494 153090239 + MGP_AJ_P0069834 Tmem52 protein_coding protein_coding MGP_AJ_T0069835.1 MGP_AJ_G0029179.1 mouse_genomes_project 4 153088511 153090238 + MGP_AJ_P0069835 Tmem52 protein_coding protein_coding MGP_AJ_T0069836.1 MGP_AJ_G0029179.1 mouse_genomes_project 4 153088527 153090170 + Tmem52 protein_coding retained_intron MGP_AJ_T0014475.1 MGP_AJ_G0012570.1 mouse_genomes_project 4 25066672 25067590 - processed_pseudogene processed_pseudogene MGP_AJ_T0069134.1 MGP_AJ_G0029022.1 mouse_genomes_project 4 138677371 138798055 - MGP_AJ_P0069134 Fhad1 protein_coding protein_coding MGP_AJ_T0069135.1 MGP_AJ_G0029022.1 mouse_genomes_project 4 138677784 138794625 - MGP_AJ_P0069135 Fhad1 protein_coding protein_coding MGP_AJ_T0069136.1 MGP_AJ_G0029022.1 mouse_genomes_project 4 138677784 138794625 - MGP_AJ_P0069136 Fhad1 protein_coding unknown_likely_coding MGP_AJ_T0069137.1 MGP_AJ_G0029022.1 mouse_genomes_project 4 138703023 138709360 - Fhad1 protein_coding processed_transcript MGP_AJ_T0069138.1 MGP_AJ_G0029022.1 mouse_genomes_project 4 138703023 138720021 - MGP_AJ_P0069138 Fhad1 protein_coding protein_coding MGP_AJ_T0069139.1 MGP_AJ_G0029022.1 mouse_genomes_project 4 138715319 138739907 - Fhad1 protein_coding processed_transcript MGP_AJ_T0069140.1 MGP_AJ_G0029022.1 mouse_genomes_project 4 138719714 138742025 - Fhad1 protein_coding processed_transcript MGP_AJ_T0069141.1 MGP_AJ_G0029022.1 mouse_genomes_project 4 138750714 138798070 - Fhad1 protein_coding retained_intron MGP_AJ_T0069142.1 MGP_AJ_G0029022.1 mouse_genomes_project 4 138796765 138798027 - Fhad1 protein_coding processed_transcript MGP_AJ_T0065793.1 MGP_AJ_G0028256.1 mouse_genomes_project 4 49606915 49607860 + MGP_AJ_P0065793 Olfr270 protein_coding protein_coding MGP_AJ_T0065794.1 MGP_AJ_G0028256.1 mouse_genomes_project 4 49606921 49607860 + MGP_AJ_P0065794 Olfr270 protein_coding protein_coding MGP_AJ_T0066313.1 MGP_AJ_G0028379.1 mouse_genomes_project 4 84580495 84612905 - MGP_AJ_P0066313 Mllt3 protein_coding protein_coding MGP_AJ_T0066314.1 MGP_AJ_G0028379.1 mouse_genomes_project 4 84580532 84612876 - MGP_AJ_P0066314 Mllt3 protein_coding protein_coding MGP_AJ_T0066315.1 MGP_AJ_G0028379.1 mouse_genomes_project 4 84580594 84837397 - MGP_AJ_P0066315 Mllt3 protein_coding protein_coding MGP_AJ_T0066316.1 MGP_AJ_G0028379.1 mouse_genomes_project 4 84598432 84837583 - Mllt3 protein_coding processed_transcript MGP_AJ_T0066317.1 MGP_AJ_G0028379.1 mouse_genomes_project 4 84637499 84679256 - Mllt3 protein_coding processed_transcript MGP_AJ_T0066318.1 MGP_AJ_G0028379.1 mouse_genomes_project 4 84642137 84836014 - Mllt3 protein_coding retained_intron MGP_AJ_T0066319.1 MGP_AJ_G0028379.1 mouse_genomes_project 4 84645802 84836014 - MGP_AJ_P0066319 Mllt3 protein_coding nonsense_mediated_decay MGP_AJ_T0068911.1 MGP_AJ_G0028966.1 mouse_genomes_project 4 135606827 135625376 - MGP_AJ_P0068911 Otud3 protein_coding protein_coding MGP_AJ_T0068533.1 MGP_AJ_G0028876.1 mouse_genomes_project 4 130820100 130830464 - MGP_AJ_P0068533 Cnksr1 protein_coding protein_coding MGP_AJ_T0068534.1 MGP_AJ_G0028876.1 mouse_genomes_project 4 130820108 130830404 - Cnksr1 protein_coding processed_transcript MGP_AJ_T0068535.1 MGP_AJ_G0028876.1 mouse_genomes_project 4 130821416 130822491 - Cnksr1 protein_coding processed_transcript MGP_AJ_T0068536.1 MGP_AJ_G0028876.1 mouse_genomes_project 4 130822480 130825228 - Cnksr1 protein_coding processed_transcript MGP_AJ_T0068537.1 MGP_AJ_G0028876.1 mouse_genomes_project 4 130824539 130828014 - Cnksr1 protein_coding processed_transcript MGP_AJ_T0064676.1 MGP_AJ_G0028000.1 mouse_genomes_project 4 5924515 5951310 - Asph protein_coding processed_transcript MGP_AJ_T0064677.1 MGP_AJ_G0028000.1 mouse_genomes_project 4 5925525 6143614 - MGP_AJ_P0064677 Asph protein_coding protein_coding MGP_AJ_T0064678.1 MGP_AJ_G0028000.1 mouse_genomes_project 4 5925525 6143614 - MGP_AJ_P0064678 Asph protein_coding protein_coding MGP_AJ_T0064679.1 MGP_AJ_G0028000.1 mouse_genomes_project 4 5925525 6143796 - MGP_AJ_P0064679 Asph protein_coding protein_coding MGP_AJ_T0064680.1 MGP_AJ_G0028000.1 mouse_genomes_project 4 6051717 6069659 - Asph protein_coding processed_transcript MGP_AJ_T0064681.1 MGP_AJ_G0028000.1 mouse_genomes_project 4 6052112 6143614 - MGP_AJ_P0064681 Asph protein_coding protein_coding MGP_AJ_T0064682.1 MGP_AJ_G0028000.1 mouse_genomes_project 4 6052112 6118129 - MGP_AJ_P0064682 Asph protein_coding protein_coding MGP_AJ_T0064683.1 MGP_AJ_G0028000.1 mouse_genomes_project 4 6052112 6143614 - MGP_AJ_P0064683 Asph protein_coding protein_coding MGP_AJ_T0064684.1 MGP_AJ_G0028000.1 mouse_genomes_project 4 6052112 6118129 - MGP_AJ_P0064684 Asph protein_coding protein_coding MGP_AJ_T0064685.1 MGP_AJ_G0028000.1 mouse_genomes_project 4 6052112 6118129 - MGP_AJ_P0064685 Asph protein_coding protein_coding MGP_AJ_T0064686.1 MGP_AJ_G0028000.1 mouse_genomes_project 4 6078803 6113673 - Asph protein_coding processed_transcript MGP_AJ_T0064687.1 MGP_AJ_G0028000.1 mouse_genomes_project 4 6082084 6118129 - MGP_AJ_P0064687 Asph protein_coding protein_coding MGP_AJ_T0064688.1 MGP_AJ_G0028000.1 mouse_genomes_project 4 6085130 6143614 - MGP_AJ_P0064688 Asph protein_coding protein_coding MGP_AJ_T0064689.1 MGP_AJ_G0028000.1 mouse_genomes_project 4 6095326 6118129 - MGP_AJ_P0064689 Asph protein_coding protein_coding MGP_AJ_T0064690.1 MGP_AJ_G0028000.1 mouse_genomes_project 4 6096113 6143614 - MGP_AJ_P0064690 Asph protein_coding protein_coding MGP_AJ_T0064691.1 MGP_AJ_G0028000.1 mouse_genomes_project 4 6103439 6143614 - MGP_AJ_P0064691 Asph protein_coding protein_coding MGP_AJ_T0064692.1 MGP_AJ_G0028000.1 mouse_genomes_project 4 6104969 6143614 - MGP_AJ_P0064692 Asph protein_coding protein_coding MGP_AJ_T0064693.1 MGP_AJ_G0028000.1 mouse_genomes_project 4 6105348 6143773 - MGP_AJ_P0064693 Asph protein_coding protein_coding MGP_AJ_T0064694.1 MGP_AJ_G0028000.1 mouse_genomes_project 4 6107538 6118129 - Asph protein_coding processed_transcript MGP_AJ_T0064695.1 MGP_AJ_G0028000.1 mouse_genomes_project 4 6142764 6143538 - Asph protein_coding processed_transcript MGP_AJ_T0069263.1 MGP_AJ_G0029079.1 mouse_genomes_project 4 145420946 145456519 - MGP_AJ_P0069263 Clcn6 protein_coding protein_coding MGP_AJ_T0069264.1 MGP_AJ_G0029079.1 mouse_genomes_project 4 145422821 145456511 - MGP_AJ_P0069264 Clcn6 protein_coding protein_coding MGP_AJ_T0069265.1 MGP_AJ_G0029079.1 mouse_genomes_project 4 145423276 145456468 - MGP_AJ_P0069265 Clcn6 protein_coding nonsense_mediated_decay MGP_AJ_T0069266.1 MGP_AJ_G0029079.1 mouse_genomes_project 4 145442153 145456461 - Clcn6 protein_coding processed_transcript MGP_AJ_T0069267.1 MGP_AJ_G0029079.1 mouse_genomes_project 4 145444279 145456260 - MGP_AJ_P0069267 Clcn6 protein_coding nonsense_mediated_decay MGP_AJ_T0102603.1 MGP_AJ_G0040345.1 mouse_genomes_project 4 111499145 111517190 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0067935.1 MGP_AJ_G0028753.1 mouse_genomes_project 4 123823266 123895417 + MGP_AJ_P0067935 Dlgap3 protein_coding protein_coding MGP_AJ_T0067936.1 MGP_AJ_G0028753.1 mouse_genomes_project 4 123826826 123895417 + MGP_AJ_P0067936 Dlgap3 protein_coding protein_coding MGP_AJ_T0067937.1 MGP_AJ_G0028753.1 mouse_genomes_project 4 123848581 123894763 + MGP_AJ_P0067937 Dlgap3 protein_coding protein_coding MGP_AJ_T0067938.1 MGP_AJ_G0028753.1 mouse_genomes_project 4 123857724 123872230 + Dlgap3 protein_coding processed_transcript MGP_AJ_T0099936.1 MGP_AJ_G0037902.1 mouse_genomes_project 4 96651557 96651639 + Gm26425 snRNA snRNA MGP_AJ_T0014458.1 MGP_AJ_G0012553.1 mouse_genomes_project 4 21804236 21805064 - processed_pseudogene processed_pseudogene MGP_AJ_T0099908.1 MGP_AJ_G0037874.1 mouse_genomes_project 4 36419872 36419934 - Gm26087 snRNA snRNA MGP_AJ_T0010653.1 MGP_AJ_G0008775.1 mouse_genomes_project 4 153666300 153666390 - Mir200a miRNA miRNA MGP_AJ_T0069660.1 MGP_AJ_G0029150.1 mouse_genomes_project 4 151561502 151566191 + MGP_AJ_P0069660 A430005L14Rik protein_coding protein_coding MGP_AJ_T0069661.1 MGP_AJ_G0029150.1 mouse_genomes_project 4 151561502 151566184 + MGP_AJ_P0069661 A430005L14Rik protein_coding protein_coding MGP_AJ_T0069662.1 MGP_AJ_G0029150.1 mouse_genomes_project 4 151561520 151564332 + A430005L14Rik protein_coding retained_intron MGP_AJ_T0069663.1 MGP_AJ_G0029150.1 mouse_genomes_project 4 151561531 151565777 + MGP_AJ_P0069663 A430005L14Rik protein_coding protein_coding MGP_AJ_T0069664.1 MGP_AJ_G0029150.1 mouse_genomes_project 4 151561531 151566069 + MGP_AJ_P0069664 A430005L14Rik protein_coding nonsense_mediated_decay MGP_AJ_T0069665.1 MGP_AJ_G0029150.1 mouse_genomes_project 4 151561594 151565000 + A430005L14Rik protein_coding processed_transcript MGP_AJ_T0069666.1 MGP_AJ_G0029150.1 mouse_genomes_project 4 151564057 151565355 + A430005L14Rik protein_coding retained_intron MGP_AJ_T0067422.1 MGP_AJ_G0028622.1 mouse_genomes_project 4 114346236 114349838 - MGP_AJ_P0067422 Artn protein_coding protein_coding MGP_AJ_T0067423.1 MGP_AJ_G0028622.1 mouse_genomes_project 4 114346237 114349572 - MGP_AJ_P0067423 Artn protein_coding protein_coding MGP_AJ_T0067424.1 MGP_AJ_G0028622.1 mouse_genomes_project 4 114348116 114349552 - Artn protein_coding processed_transcript MGP_AJ_T0067425.1 MGP_AJ_G0028622.1 mouse_genomes_project 4 114348218 114349488 - Artn protein_coding processed_transcript MGP_AJ_T0068529.1 MGP_AJ_G0028875.1 mouse_genomes_project 4 130803781 130819452 - MGP_AJ_P0068529 Catsper4 protein_coding protein_coding MGP_AJ_T0068530.1 MGP_AJ_G0028875.1 mouse_genomes_project 4 130803781 130819452 - MGP_AJ_P0068530 Catsper4 protein_coding protein_coding MGP_AJ_T0068531.1 MGP_AJ_G0028875.1 mouse_genomes_project 4 130817726 130819441 - MGP_AJ_P0068531 Catsper4 protein_coding protein_coding MGP_AJ_T0068532.1 MGP_AJ_G0028875.1 mouse_genomes_project 4 130818566 130819419 - Catsper4 protein_coding processed_transcript MGP_AJ_T0065795.1 MGP_AJ_G0028257.1 mouse_genomes_project 4 49625518 49636428 + MGP_AJ_P0065795 Nipsnap3a protein_coding nonsense_mediated_decay MGP_AJ_T0065796.1 MGP_AJ_G0028257.1 mouse_genomes_project 4 49625530 49636435 + MGP_AJ_P0065796 Nipsnap3a protein_coding protein_coding MGP_AJ_T0065797.1 MGP_AJ_G0028257.1 mouse_genomes_project 4 49625664 49636744 + MGP_AJ_P0065797 Nipsnap3a protein_coding protein_coding MGP_AJ_T0065798.1 MGP_AJ_G0028257.1 mouse_genomes_project 4 49635829 49636427 + Nipsnap3a protein_coding retained_intron MGP_AJ_T0065588.1 MGP_AJ_G0028200.1 mouse_genomes_project 4 41967353 41985810 + MGP_AJ_P0065588 Trmt10b protein_coding protein_coding MGP_AJ_T0065589.1 MGP_AJ_G0028200.1 mouse_genomes_project 4 41967381 41974618 + MGP_AJ_P0065589 Trmt10b protein_coding protein_coding MGP_AJ_T0065590.1 MGP_AJ_G0028200.1 mouse_genomes_project 4 41970643 41978781 + Trmt10b protein_coding processed_transcript MGP_AJ_T0065591.1 MGP_AJ_G0028200.1 mouse_genomes_project 4 41970663 41984821 + Trmt10b protein_coding processed_transcript MGP_AJ_T0065592.1 MGP_AJ_G0028200.1 mouse_genomes_project 4 41970663 41974615 + Trmt10b protein_coding processed_transcript MGP_AJ_T0065593.1 MGP_AJ_G0028200.1 mouse_genomes_project 4 41970663 41984821 + MGP_AJ_P0065593 Trmt10b protein_coding protein_coding MGP_AJ_T0065594.1 MGP_AJ_G0028200.1 mouse_genomes_project 4 41983776 41984727 + Trmt10b protein_coding processed_transcript MGP_AJ_T0007833.1 MGP_AJ_G0006400.1 mouse_genomes_project 4 35037352 35334651 - lincRNA lincRNA MGP_AJ_T0014733.1 MGP_AJ_G0012828.1 mouse_genomes_project 4 114242457 114242934 - processed_pseudogene processed_pseudogene MGP_AJ_T0069481.1 MGP_AJ_G0029119.1 mouse_genomes_project 4 147767104 148114816 + MGP_AJ_P0069481 Rere protein_coding protein_coding MGP_AJ_T0069482.1 MGP_AJ_G0029119.1 mouse_genomes_project 4 147767269 147767924 + Rere protein_coding processed_transcript MGP_AJ_T0069483.1 MGP_AJ_G0029119.1 mouse_genomes_project 4 147860519 148112505 + MGP_AJ_P0069483 Rere protein_coding unknown_likely_coding MGP_AJ_T0069484.1 MGP_AJ_G0029119.1 mouse_genomes_project 4 147895117 147959630 + MGP_AJ_P0069484 Rere protein_coding protein_coding MGP_AJ_T0069485.1 MGP_AJ_G0029119.1 mouse_genomes_project 4 147977930 148114812 + MGP_AJ_P0069485 Rere protein_coding protein_coding MGP_AJ_T0069486.1 MGP_AJ_G0029119.1 mouse_genomes_project 4 148061770 148062678 + Rere protein_coding processed_transcript MGP_AJ_T0069487.1 MGP_AJ_G0029119.1 mouse_genomes_project 4 148061839 148105094 + Rere protein_coding processed_transcript MGP_AJ_T0069488.1 MGP_AJ_G0029119.1 mouse_genomes_project 4 148110281 148112844 + MGP_AJ_P0069488 Rere protein_coding protein_coding MGP_AJ_T0067080.1 MGP_AJ_G0028550.1 mouse_genomes_project 4 110736133 110945573 + MGP_AJ_P0067080 Trabd2b protein_coding protein_coding MGP_AJ_T0008020.1 MGP_AJ_G0006542.1 mouse_genomes_project 4 137421232 137425879 + Gm13025 lincRNA lincRNA MGP_AJ_T0067232.1 MGP_AJ_G0028588.1 mouse_genomes_project 4 112955769 112992679 + MGP_AJ_P0067232 Gpbp1l1 protein_coding protein_coding MGP_AJ_T0067233.1 MGP_AJ_G0028588.1 mouse_genomes_project 4 112956190 112991297 + MGP_AJ_P0067233 Gpbp1l1 protein_coding protein_coding MGP_AJ_T0067234.1 MGP_AJ_G0028588.1 mouse_genomes_project 4 112976958 112979595 + Gpbp1l1 protein_coding processed_transcript MGP_AJ_T0067235.1 MGP_AJ_G0028588.1 mouse_genomes_project 4 112979505 112987080 + Gpbp1l1 protein_coding processed_transcript MGP_AJ_T0064837.1 MGP_AJ_G0028041.1 mouse_genomes_project 4 16169926 16263805 - MGP_AJ_P0064837 Wwp1 protein_coding protein_coding MGP_AJ_T0064838.1 MGP_AJ_G0028041.1 mouse_genomes_project 4 16171296 16233361 - MGP_AJ_P0064838 Wwp1 protein_coding protein_coding MGP_AJ_T0011567.1 MGP_AJ_G0009689.1 mouse_genomes_project 4 50354228 50354527 - Gm25445 misc_RNA misc_RNA MGP_AJ_T0065446.1 MGP_AJ_G0028171.1 mouse_genomes_project 4 40220418 40230274 + MGP_AJ_P0065446 Rgp1 protein_coding protein_coding MGP_AJ_T0065447.1 MGP_AJ_G0028171.1 mouse_genomes_project 4 40220438 40230272 + MGP_AJ_P0065447 Rgp1 protein_coding protein_coding MGP_AJ_T0065448.1 MGP_AJ_G0028171.1 mouse_genomes_project 4 40220657 40222625 + Rgp1 protein_coding processed_transcript MGP_AJ_T0065449.1 MGP_AJ_G0028171.1 mouse_genomes_project 4 40220661 40224832 + MGP_AJ_P0065449 Rgp1 protein_coding protein_coding MGP_AJ_T0065450.1 MGP_AJ_G0028171.1 mouse_genomes_project 4 40220686 40221324 + Rgp1 protein_coding retained_intron MGP_AJ_T0065451.1 MGP_AJ_G0028171.1 mouse_genomes_project 4 40221438 40222621 + Rgp1 protein_coding retained_intron MGP_AJ_T0065452.1 MGP_AJ_G0028171.1 mouse_genomes_project 4 40222915 40223422 + Rgp1 protein_coding retained_intron MGP_AJ_T0014546.1 MGP_AJ_G0012641.1 mouse_genomes_project 4 48872215 48874626 + processed_pseudogene processed_pseudogene MGP_AJ_T0065396.1 MGP_AJ_G0028164.1 mouse_genomes_project 4 40134792 40136098 + Ccdc107 protein_coding processed_transcript MGP_AJ_T0065397.1 MGP_AJ_G0028164.1 mouse_genomes_project 4 40135254 40137814 + MGP_AJ_P0065397 Ccdc107 protein_coding protein_coding MGP_AJ_T0065398.1 MGP_AJ_G0028164.1 mouse_genomes_project 4 40135269 40135703 + Ccdc107 protein_coding processed_transcript MGP_AJ_T0065399.1 MGP_AJ_G0028164.1 mouse_genomes_project 4 40135281 40137814 + MGP_AJ_P0065399 Ccdc107 protein_coding protein_coding MGP_AJ_T0065400.1 MGP_AJ_G0028164.1 mouse_genomes_project 4 40135309 40137757 + Ccdc107 protein_coding processed_transcript MGP_AJ_T0065401.1 MGP_AJ_G0028164.1 mouse_genomes_project 4 40135309 40137764 + Ccdc107 protein_coding processed_transcript MGP_AJ_T0065028.1 MGP_AJ_G0028087.1 mouse_genomes_project 4 31079883 31109297 - MGP_AJ_P0065028 Slc35a1 protein_coding protein_coding MGP_AJ_T0065029.1 MGP_AJ_G0028087.1 mouse_genomes_project 4 31080505 31105329 - Slc35a1 protein_coding processed_transcript MGP_AJ_T0065030.1 MGP_AJ_G0028087.1 mouse_genomes_project 4 31086106 31105236 - MGP_AJ_P0065030 Slc35a1 protein_coding protein_coding MGP_AJ_T0065031.1 MGP_AJ_G0028087.1 mouse_genomes_project 4 31091684 31109114 - Slc35a1 protein_coding processed_transcript MGP_AJ_T0065032.1 MGP_AJ_G0028087.1 mouse_genomes_project 4 31105207 31109255 - Slc35a1 protein_coding processed_transcript MGP_AJ_T0065744.1 MGP_AJ_G0028237.1 mouse_genomes_project 4 45350801 45360797 + MGP_AJ_P0065744 Murc protein_coding protein_coding MGP_AJ_T0068824.1 MGP_AJ_G0028946.1 mouse_genomes_project 4 134426342 134482655 - MGP_AJ_P0068824 Alpl protein_coding protein_coding MGP_AJ_T0068825.1 MGP_AJ_G0028946.1 mouse_genomes_project 4 134431055 134431783 - Alpl protein_coding processed_transcript MGP_AJ_T0068826.1 MGP_AJ_G0028946.1 mouse_genomes_project 4 134437175 134451558 - MGP_AJ_P0068826 Alpl protein_coding protein_coding MGP_AJ_T0068827.1 MGP_AJ_G0028946.1 mouse_genomes_project 4 134438491 134468538 - MGP_AJ_P0068827 Alpl protein_coding protein_coding MGP_AJ_T0068828.1 MGP_AJ_G0028946.1 mouse_genomes_project 4 134439700 134471714 - MGP_AJ_P0068828 Alpl protein_coding protein_coding MGP_AJ_T0068829.1 MGP_AJ_G0028946.1 mouse_genomes_project 4 134440244 134482501 - Alpl protein_coding processed_transcript MGP_AJ_T0068830.1 MGP_AJ_G0028946.1 mouse_genomes_project 4 134443281 134454832 - Alpl protein_coding processed_transcript MGP_AJ_T0068831.1 MGP_AJ_G0028946.1 mouse_genomes_project 4 134443281 134455037 - Alpl protein_coding processed_transcript MGP_AJ_T0064702.1 MGP_AJ_G0028003.1 mouse_genomes_project 4 7505262 7524072 - MGP_AJ_P0064702 Plekhf2 protein_coding protein_coding MGP_AJ_T0064703.1 MGP_AJ_G0028003.1 mouse_genomes_project 4 7507349 7524323 - MGP_AJ_P0064703 Plekhf2 protein_coding protein_coding MGP_AJ_T0068358.1 MGP_AJ_G0028837.1 mouse_genomes_project 4 129298222 129322556 - MGP_AJ_P0068358 Smpdl3b protein_coding protein_coding MGP_AJ_T0008008.1 MGP_AJ_G0006531.1 mouse_genomes_project 4 133820764 133826767 - Gm13003 lincRNA lincRNA MGP_AJ_T0069117.1 MGP_AJ_G0029017.1 mouse_genomes_project 4 138543989 138574688 - MGP_AJ_P0069117 Dnajc16 protein_coding protein_coding MGP_AJ_T0069118.1 MGP_AJ_G0029017.1 mouse_genomes_project 4 138553899 138558477 - Dnajc16 protein_coding processed_transcript MGP_AJ_T0069119.1 MGP_AJ_G0029017.1 mouse_genomes_project 4 138566838 138574728 - MGP_AJ_P0069119 Dnajc16 protein_coding protein_coding MGP_AJ_T0066743.1 MGP_AJ_G0028492.1 mouse_genomes_project 4 103864070 103875065 - MGP_AJ_P0066743 Mrpl37 protein_coding protein_coding MGP_AJ_T0066744.1 MGP_AJ_G0028492.1 mouse_genomes_project 4 103864081 103868147 - Mrpl37 protein_coding retained_intron MGP_AJ_T0066745.1 MGP_AJ_G0028492.1 mouse_genomes_project 4 103864164 103872967 - Mrpl37 protein_coding processed_transcript MGP_AJ_T0066746.1 MGP_AJ_G0028492.1 mouse_genomes_project 4 103864171 103875017 - Mrpl37 protein_coding processed_transcript MGP_AJ_T0066747.1 MGP_AJ_G0028492.1 mouse_genomes_project 4 103872592 103873554 - Mrpl37 protein_coding retained_intron MGP_AJ_T0001426.1 MGP_AJ_G0001348.1 mouse_genomes_project 4 133282449 133296098 + TEC TEC MGP_AJ_T0004596.1 MGP_AJ_G0003985.1 mouse_genomes_project 4 146795767 146813360 + Ube4bos1 antisense antisense MGP_AJ_T0004597.1 MGP_AJ_G0003985.1 mouse_genomes_project 4 146795796 146807243 + Ube4bos1 antisense antisense MGP_AJ_T0067192.1 MGP_AJ_G0028581.1 mouse_genomes_project 4 112526591 112538795 - MGP_AJ_P0067192 Lurap1 protein_coding protein_coding MGP_AJ_T0067195.1 MGP_AJ_G0028581.1 mouse_genomes_project 4 112531705 112546009 - Lurap1 protein_coding processed_transcript MGP_AJ_T0065172.1 MGP_AJ_G0028122.1 mouse_genomes_project 4 37962081 38016415 - MGP_AJ_P0065172 Fam219a protein_coding unknown_likely_coding MGP_AJ_T0065173.1 MGP_AJ_G0028122.1 mouse_genomes_project 4 37962087 38016688 - MGP_AJ_P0065173 Fam219a protein_coding protein_coding MGP_AJ_T0065174.1 MGP_AJ_G0028122.1 mouse_genomes_project 4 37962087 38016716 - MGP_AJ_P0065174 Fam219a protein_coding protein_coding MGP_AJ_T0065175.1 MGP_AJ_G0028122.1 mouse_genomes_project 4 37962087 38016716 - MGP_AJ_P0065175 Fam219a protein_coding protein_coding MGP_AJ_T0065176.1 MGP_AJ_G0028122.1 mouse_genomes_project 4 37964736 37969184 - Fam219a protein_coding processed_transcript MGP_AJ_T0065177.1 MGP_AJ_G0028122.1 mouse_genomes_project 4 37968529 38016717 - Fam219a protein_coding processed_transcript MGP_AJ_T0018038.1 MGP_AJ_G0015517.1 mouse_genomes_project 4 31335635 31341228 - Platr9 processed_transcript processed_transcript MGP_AJ_T0018039.1 MGP_AJ_G0015517.1 mouse_genomes_project 4 31339301 31341228 - Platr9 processed_transcript processed_transcript MGP_AJ_T0007989.1 MGP_AJ_G0006521.1 mouse_genomes_project 4 128824207 128824365 + Gm28872 lincRNA lincRNA MGP_AJ_T0069115.1 MGP_AJ_G0029015.1 mouse_genomes_project 4 138460751 138462500 - MGP_AJ_P0069115 Rsc1a1 protein_coding protein_coding MGP_AJ_T0067632.1 MGP_AJ_G0028676.1 mouse_genomes_project 4 117397090 117397919 - MGP_AJ_P0067632 Exo5 protein_coding protein_coding MGP_AJ_T0067633.1 MGP_AJ_G0028676.1 mouse_genomes_project 4 117397090 117400893 - MGP_AJ_P0067633 Exo5 protein_coding protein_coding MGP_AJ_T0067634.1 MGP_AJ_G0028676.1 mouse_genomes_project 4 117397096 117400893 - MGP_AJ_P0067634 Exo5 protein_coding protein_coding MGP_AJ_T0067635.1 MGP_AJ_G0028676.1 mouse_genomes_project 4 117398163 117400905 - MGP_AJ_P0067635 Exo5 protein_coding protein_coding MGP_AJ_T0014579.1 MGP_AJ_G0012674.1 mouse_genomes_project 4 60669243 60670352 - processed_pseudogene processed_pseudogene MGP_AJ_T0066091.1 MGP_AJ_G0028338.1 mouse_genomes_project 4 62150349 63178141 - MGP_AJ_P0066091 Astn2 protein_coding protein_coding MGP_AJ_T0066092.1 MGP_AJ_G0028338.1 mouse_genomes_project 4 62150349 63178013 - MGP_AJ_P0066092 Astn2 protein_coding protein_coding MGP_AJ_T0007842.1 MGP_AJ_G0006409.1 mouse_genomes_project 4 42316901 42319269 + lincRNA lincRNA MGP_AJ_T0014428.1 MGP_AJ_G0012523.1 mouse_genomes_project 4 12686068 12686198 - processed_pseudogene processed_pseudogene MGP_AJ_T0068288.1 MGP_AJ_G0028824.1 mouse_genomes_project 4 128774098 128806077 - MGP_AJ_P0068288 Gmeb1 protein_coding protein_coding MGP_AJ_T0068289.1 MGP_AJ_G0028824.1 mouse_genomes_project 4 128776068 128816175 - MGP_AJ_P0068289 Gmeb1 protein_coding protein_coding MGP_AJ_T0068290.1 MGP_AJ_G0028824.1 mouse_genomes_project 4 128778141 128805435 - MGP_AJ_P0068290 Gmeb1 protein_coding protein_coding MGP_AJ_T0068291.1 MGP_AJ_G0028824.1 mouse_genomes_project 4 128778793 128816256 - MGP_AJ_P0068291 Gmeb1 protein_coding protein_coding MGP_AJ_T0068292.1 MGP_AJ_G0028824.1 mouse_genomes_project 4 128784638 128787867 - Gmeb1 protein_coding retained_intron MGP_AJ_T0068293.1 MGP_AJ_G0028824.1 mouse_genomes_project 4 128789653 128799651 - Gmeb1 protein_coding retained_intron MGP_AJ_T0068294.1 MGP_AJ_G0028824.1 mouse_genomes_project 4 128805346 128808457 - Gmeb1 protein_coding processed_transcript MGP_AJ_T0065810.1 MGP_AJ_G0028261.1 mouse_genomes_project 4 50268647 50340336 + MGP_AJ_P0065810 Fsd1l protein_coding protein_coding MGP_AJ_T0065811.1 MGP_AJ_G0028261.1 mouse_genomes_project 4 50268666 50288982 + Fsd1l protein_coding retained_intron MGP_AJ_T0065812.1 MGP_AJ_G0028261.1 mouse_genomes_project 4 50268667 50285088 + Fsd1l protein_coding retained_intron MGP_AJ_T0065813.1 MGP_AJ_G0028261.1 mouse_genomes_project 4 50268745 50334486 + MGP_AJ_P0065813 Fsd1l protein_coding protein_coding MGP_AJ_T0065814.1 MGP_AJ_G0028261.1 mouse_genomes_project 4 50268750 50334484 + MGP_AJ_P0065814 Fsd1l protein_coding protein_coding MGP_AJ_T0065815.1 MGP_AJ_G0028261.1 mouse_genomes_project 4 50268892 50296878 + MGP_AJ_P0065815 Fsd1l protein_coding nonsense_mediated_decay MGP_AJ_T0065816.1 MGP_AJ_G0028261.1 mouse_genomes_project 4 50280468 50340336 + MGP_AJ_P0065816 Fsd1l protein_coding protein_coding MGP_AJ_T0064632.1 MGP_AJ_G0027991.1 mouse_genomes_project 4 2723116 2755359 + MGP_AJ_P0064632 Ubxn2b protein_coding protein_coding MGP_AJ_T0065864.1 MGP_AJ_G0028276.1 mouse_genomes_project 4 53640438 53793178 - MGP_AJ_P0065864 protein_coding protein_coding MGP_AJ_T0065865.1 MGP_AJ_G0028276.1 mouse_genomes_project 4 53644140 53676584 - MGP_AJ_P0065865 protein_coding protein_coding MGP_AJ_T0065866.1 MGP_AJ_G0028276.1 mouse_genomes_project 4 53710865 53793178 - MGP_AJ_P0065866 protein_coding protein_coding MGP_AJ_T0065867.1 MGP_AJ_G0028276.1 mouse_genomes_project 4 53712171 53719663 - protein_coding processed_transcript MGP_AJ_T0065868.1 MGP_AJ_G0028276.1 mouse_genomes_project 4 53722408 53752662 - protein_coding processed_transcript MGP_AJ_T0065869.1 MGP_AJ_G0028276.1 mouse_genomes_project 4 53727924 53787954 - protein_coding processed_transcript MGP_AJ_T0065870.1 MGP_AJ_G0028276.1 mouse_genomes_project 4 53737128 53769224 - protein_coding processed_transcript MGP_AJ_T0099971.1 MGP_AJ_G0037937.1 mouse_genomes_project 4 133992176 133992265 + Gm25772 snRNA snRNA MGP_AJ_T0065467.1 MGP_AJ_G0028175.1 mouse_genomes_project 4 40298162 40300384 - Hint2 protein_coding processed_transcript MGP_AJ_T0065468.1 MGP_AJ_G0028175.1 mouse_genomes_project 4 40298162 40300379 - Hint2 protein_coding processed_transcript MGP_AJ_T0065469.1 MGP_AJ_G0028175.1 mouse_genomes_project 4 40298163 40298892 - Hint2 protein_coding processed_transcript MGP_AJ_T0065470.1 MGP_AJ_G0028175.1 mouse_genomes_project 4 40298164 40298663 - Hint2 protein_coding processed_transcript MGP_AJ_T0065471.1 MGP_AJ_G0028175.1 mouse_genomes_project 4 40298164 40300402 - MGP_AJ_P0065471 Hint2 protein_coding protein_coding MGP_AJ_T0065472.1 MGP_AJ_G0028175.1 mouse_genomes_project 4 40298165 40300384 - Hint2 protein_coding processed_transcript MGP_AJ_T0065473.1 MGP_AJ_G0028175.1 mouse_genomes_project 4 40298609 40299679 - Hint2 protein_coding processed_transcript MGP_AJ_T0001418.1 MGP_AJ_G0001341.1 mouse_genomes_project 4 105433097 105435385 - TEC TEC MGP_AJ_T0099983.1 MGP_AJ_G0037949.1 mouse_genomes_project 4 153632995 153633096 - Gm25982 snRNA snRNA MGP_AJ_T0014831.1 MGP_AJ_G0012926.1 mouse_genomes_project 4 147264221 147264362 - processed_pseudogene processed_pseudogene MGP_AJ_T0014505.1 MGP_AJ_G0012600.1 mouse_genomes_project 4 33648828 33649296 - processed_pseudogene processed_pseudogene MGP_AJ_T0007863.1 MGP_AJ_G0006425.1 mouse_genomes_project 4 52862757 52866647 - 2310081O03Rik lincRNA lincRNA MGP_AJ_T0004558.1 MGP_AJ_G0003957.1 mouse_genomes_project 4 134113329 134115133 - Gm13010 antisense antisense MGP_AJ_T0069125.1 MGP_AJ_G0029019.1 mouse_genomes_project 4 138598890 138603131 - Cela2a protein_coding retained_intron MGP_AJ_T0069126.1 MGP_AJ_G0029019.1 mouse_genomes_project 4 138598890 138610089 - MGP_AJ_P0069126 Cela2a protein_coding protein_coding MGP_AJ_T0069128.1 MGP_AJ_G0029019.1 mouse_genomes_project 4 138608880 138609930 - Cela2a protein_coding retained_intron MGP_AJ_T0065379.1 MGP_AJ_G0028161.1 mouse_genomes_project 4 40080405 40086496 + MGP_AJ_P0065379 Tesk1 protein_coding protein_coding MGP_AJ_T0065380.1 MGP_AJ_G0028161.1 mouse_genomes_project 4 40081751 40086226 + MGP_AJ_P0065380 Tesk1 protein_coding nonsense_mediated_decay MGP_AJ_T0065381.1 MGP_AJ_G0028161.1 mouse_genomes_project 4 40083005 40083811 + Tesk1 protein_coding retained_intron MGP_AJ_T0065382.1 MGP_AJ_G0028161.1 mouse_genomes_project 4 40083138 40084248 + Tesk1 protein_coding retained_intron MGP_AJ_T0065383.1 MGP_AJ_G0028161.1 mouse_genomes_project 4 40083380 40084442 + Tesk1 protein_coding retained_intron MGP_AJ_T0065745.1 MGP_AJ_G0028238.1 mouse_genomes_project 4 45727424 45878330 + protein_coding retained_intron MGP_AJ_T0065746.1 MGP_AJ_G0028238.1 mouse_genomes_project 4 45727607 45971552 + protein_coding retained_intron MGP_AJ_T0066506.1 MGP_AJ_G0028440.1 mouse_genomes_project 4 95695581 95885460 - MGP_AJ_P0066506 Dock7 protein_coding protein_coding MGP_AJ_T0066507.1 MGP_AJ_G0028440.1 mouse_genomes_project 4 95695764 95711639 - Dock7 protein_coding processed_transcript MGP_AJ_T0066508.1 MGP_AJ_G0028440.1 mouse_genomes_project 4 95695765 95885319 - MGP_AJ_P0066508 Dock7 protein_coding protein_coding MGP_AJ_T0066509.1 MGP_AJ_G0028440.1 mouse_genomes_project 4 95695767 95885319 - MGP_AJ_P0066509 Dock7 protein_coding protein_coding MGP_AJ_T0066510.1 MGP_AJ_G0028440.1 mouse_genomes_project 4 95695767 95785066 - MGP_AJ_P0066510 Dock7 protein_coding nonsense_mediated_decay MGP_AJ_T0066511.1 MGP_AJ_G0028440.1 mouse_genomes_project 4 95696168 95885319 - MGP_AJ_P0066511 Dock7 protein_coding protein_coding MGP_AJ_T0066512.1 MGP_AJ_G0028440.1 mouse_genomes_project 4 95703398 95704351 - Dock7 protein_coding retained_intron MGP_AJ_T0066513.1 MGP_AJ_G0028440.1 mouse_genomes_project 4 95703401 95707532 - Dock7 protein_coding retained_intron MGP_AJ_T0066514.1 MGP_AJ_G0028440.1 mouse_genomes_project 4 95703803 95714043 - Dock7 protein_coding processed_transcript MGP_AJ_T0066515.1 MGP_AJ_G0028440.1 mouse_genomes_project 4 95704708 95717315 - MGP_AJ_P0066515 Dock7 protein_coding nonsense_mediated_decay MGP_AJ_T0066516.1 MGP_AJ_G0028440.1 mouse_genomes_project 4 95714408 95721698 - Dock7 protein_coding retained_intron MGP_AJ_T0066517.1 MGP_AJ_G0028440.1 mouse_genomes_project 4 95718306 95719633 - Dock7 protein_coding processed_transcript MGP_AJ_T0066518.1 MGP_AJ_G0028440.1 mouse_genomes_project 4 95749543 95769978 - MGP_AJ_P0066518 Dock7 protein_coding protein_coding MGP_AJ_T0066519.1 MGP_AJ_G0028440.1 mouse_genomes_project 4 95751627 95769943 - MGP_AJ_P0066519 Dock7 protein_coding protein_coding MGP_AJ_T0066520.1 MGP_AJ_G0028440.1 mouse_genomes_project 4 95752862 95755192 - Dock7 protein_coding retained_intron MGP_AJ_T0066521.1 MGP_AJ_G0028440.1 mouse_genomes_project 4 95761503 95769153 - Dock7 protein_coding processed_transcript MGP_AJ_T0066522.1 MGP_AJ_G0028440.1 mouse_genomes_project 4 95768613 95817024 - MGP_AJ_P0066522 Dock7 protein_coding nonsense_mediated_decay MGP_AJ_T0066526.1 MGP_AJ_G0028440.1 mouse_genomes_project 4 95825431 95828809 - Dock7 protein_coding retained_intron MGP_AJ_T0066543.1 MGP_AJ_G0028447.1 mouse_genomes_project 4 96601182 96603565 + MGP_AJ_P0066543 Efcab7 protein_coding protein_coding MGP_AJ_T0066544.1 MGP_AJ_G0028447.1 mouse_genomes_project 4 96601421 96654371 + MGP_AJ_P0066544 Efcab7 protein_coding unknown_likely_coding MGP_AJ_T0066545.1 MGP_AJ_G0028447.1 mouse_genomes_project 4 96601424 96603565 + MGP_AJ_P0066545 Efcab7 protein_coding protein_coding MGP_AJ_T0066546.1 MGP_AJ_G0028447.1 mouse_genomes_project 4 96601484 96603565 + MGP_AJ_P0066546 Efcab7 protein_coding protein_coding MGP_AJ_T0066547.1 MGP_AJ_G0028447.1 mouse_genomes_project 4 96603378 96654371 + MGP_AJ_P0066547 Efcab7 protein_coding protein_coding MGP_AJ_T0066548.1 MGP_AJ_G0028447.1 mouse_genomes_project 4 96651340 96654549 + MGP_AJ_P0066548 Efcab7 protein_coding protein_coding MGP_AJ_T0099980.1 MGP_AJ_G0037946.1 mouse_genomes_project 4 147808374 147808484 + Gm23209 snRNA snRNA MGP_AJ_T0068187.1 MGP_AJ_G0028804.1 mouse_genomes_project 4 126854695 126865041 - MGP_AJ_P0068187 Tinagl1 protein_coding nonsense_mediated_decay MGP_AJ_T0068188.1 MGP_AJ_G0028804.1 mouse_genomes_project 4 126855843 126865041 - MGP_AJ_P0068188 Tinagl1 protein_coding protein_coding MGP_AJ_T0068189.1 MGP_AJ_G0028804.1 mouse_genomes_project 4 126855845 126856853 - Tinagl1 protein_coding retained_intron MGP_AJ_T0068190.1 MGP_AJ_G0028804.1 mouse_genomes_project 4 126855845 126865031 - MGP_AJ_P0068190 Tinagl1 protein_coding protein_coding MGP_AJ_T0068191.1 MGP_AJ_G0028804.1 mouse_genomes_project 4 126855960 126865361 - MGP_AJ_P0068191 Tinagl1 protein_coding protein_coding MGP_AJ_T0068192.1 MGP_AJ_G0028804.1 mouse_genomes_project 4 126857218 126859724 - Tinagl1 protein_coding retained_intron MGP_AJ_T0068193.1 MGP_AJ_G0028804.1 mouse_genomes_project 4 126859352 126864930 - MGP_AJ_P0068193 Tinagl1 protein_coding protein_coding MGP_AJ_T0068194.1 MGP_AJ_G0028804.1 mouse_genomes_project 4 126861645 126865031 - Tinagl1 protein_coding processed_transcript MGP_AJ_T0068195.1 MGP_AJ_G0028804.1 mouse_genomes_project 4 126863948 126865059 - Tinagl1 protein_coding retained_intron MGP_AJ_T0066475.1 MGP_AJ_G0028434.1 mouse_genomes_project 4 95086268 95108022 - MGP_AJ_P0066475 Tm2d1 protein_coding nonsense_mediated_decay MGP_AJ_T0066476.1 MGP_AJ_G0028434.1 mouse_genomes_project 4 95086268 95116054 - MGP_AJ_P0066476 Tm2d1 protein_coding protein_coding MGP_AJ_T0066477.1 MGP_AJ_G0028434.1 mouse_genomes_project 4 95086268 95116240 - MGP_AJ_P0066477 Tm2d1 protein_coding protein_coding MGP_AJ_T0066478.1 MGP_AJ_G0028434.1 mouse_genomes_project 4 95086268 95116300 - MGP_AJ_P0066478 Tm2d1 protein_coding protein_coding MGP_AJ_T0066479.1 MGP_AJ_G0028434.1 mouse_genomes_project 4 95086503 95116226 - MGP_AJ_P0066479 Tm2d1 protein_coding protein_coding MGP_AJ_T0065243.1 MGP_AJ_G0028138.1 mouse_genomes_project 4 38226495 38231778 - MGP_AJ_P0065243 protein_coding protein_coding MGP_AJ_T0065255.1 MGP_AJ_G0028138.1 mouse_genomes_project 4 38231487 38236521 - MGP_AJ_P0065255 protein_coding protein_coding MGP_AJ_T0065164.1 MGP_AJ_G0028121.1 mouse_genomes_project 4 37948764 37951519 - 1110017D15Rik protein_coding processed_transcript MGP_AJ_T0065165.1 MGP_AJ_G0028121.1 mouse_genomes_project 4 37948764 37951509 - 1110017D15Rik protein_coding processed_transcript MGP_AJ_T0065166.1 MGP_AJ_G0028121.1 mouse_genomes_project 4 37948764 37951514 - 1110017D15Rik protein_coding processed_transcript MGP_AJ_T0065167.1 MGP_AJ_G0028121.1 mouse_genomes_project 4 37948764 37955208 - MGP_AJ_P0065167 1110017D15Rik protein_coding protein_coding MGP_AJ_T0065168.1 MGP_AJ_G0028121.1 mouse_genomes_project 4 37948764 37961730 - MGP_AJ_P0065168 1110017D15Rik protein_coding protein_coding MGP_AJ_T0065169.1 MGP_AJ_G0028121.1 mouse_genomes_project 4 37948764 37961730 - MGP_AJ_P0065169 1110017D15Rik protein_coding protein_coding MGP_AJ_T0065170.1 MGP_AJ_G0028121.1 mouse_genomes_project 4 37950879 37961725 - 1110017D15Rik protein_coding processed_transcript MGP_AJ_T0065171.1 MGP_AJ_G0028121.1 mouse_genomes_project 4 37952272 37952703 - 1110017D15Rik protein_coding processed_transcript MGP_AJ_T0068896.1 MGP_AJ_G0028962.1 mouse_genomes_project 4 135484156 135491187 + MGP_AJ_P0068896 Pla2g2d protein_coding protein_coding MGP_AJ_T0068897.1 MGP_AJ_G0028962.1 mouse_genomes_project 4 135486315 135489547 + MGP_AJ_P0068897 Pla2g2d protein_coding protein_coding MGP_AJ_T0065936.1 MGP_AJ_G0028295.1 mouse_genomes_project 4 55843564 55881088 + MGP_AJ_P0065936 Ugcg protein_coding protein_coding MGP_AJ_T0065937.1 MGP_AJ_G0028295.1 mouse_genomes_project 4 55843862 55869515 + Ugcg protein_coding processed_transcript MGP_AJ_T0065938.1 MGP_AJ_G0028295.1 mouse_genomes_project 4 55869031 55871223 + Ugcg protein_coding processed_transcript MGP_AJ_T0065939.1 MGP_AJ_G0028295.1 mouse_genomes_project 4 55869967 55871607 + Ugcg protein_coding processed_transcript MGP_AJ_T0102583.1 MGP_AJ_G0040325.1 mouse_genomes_project 4 49571515 49572466 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0014664.1 MGP_AJ_G0012759.1 mouse_genomes_project 4 92792704 92792984 - processed_pseudogene processed_pseudogene MGP_AJ_T0101247.1 MGP_AJ_G0039213.1 mouse_genomes_project 4 115427037 115427162 + Gm24352 snoRNA snoRNA MGP_AJ_T0004551.1 MGP_AJ_G0003951.1 mouse_genomes_project 4 130453483 130458181 + Gm12977 antisense antisense MGP_AJ_T0004552.1 MGP_AJ_G0003951.1 mouse_genomes_project 4 130454125 130457407 + Gm12977 antisense antisense MGP_AJ_T0067999.1 MGP_AJ_G0028771.1 mouse_genomes_project 4 125778444 125784523 + MGP_AJ_P0067999 Tmem54 protein_coding protein_coding MGP_AJ_T0068000.1 MGP_AJ_G0028771.1 mouse_genomes_project 4 125778470 125784523 + MGP_AJ_P0068000 Tmem54 protein_coding protein_coding MGP_AJ_T0068001.1 MGP_AJ_G0028771.1 mouse_genomes_project 4 125778497 125784414 + MGP_AJ_P0068001 Tmem54 protein_coding protein_coding MGP_AJ_T0068002.1 MGP_AJ_G0028771.1 mouse_genomes_project 4 125779765 125783441 + MGP_AJ_P0068002 Tmem54 protein_coding protein_coding MGP_AJ_T0018094.1 MGP_AJ_G0015553.1 mouse_genomes_project 4 122960624 122962261 + Gm12945 processed_transcript processed_transcript MGP_AJ_T0101262.1 MGP_AJ_G0039228.1 mouse_genomes_project 4 128866137 128866267 + Snora61 snoRNA snoRNA MGP_AJ_T0066334.1 MGP_AJ_G0028384.1 mouse_genomes_project 4 85360089 85360659 - MGP_AJ_P0066334 Ifna14 protein_coding protein_coding MGP_AJ_T0010637.1 MGP_AJ_G0008759.1 mouse_genomes_project 4 135016949 135017018 - Mir7019 miRNA miRNA MGP_AJ_T0066056.1 MGP_AJ_G0028327.1 mouse_genomes_project 4 60125567 60128985 + MGP_AJ_P0066056 Orm2 protein_coding protein_coding MGP_AJ_T0065617.1 MGP_AJ_G0028206.1 mouse_genomes_project 4 42486614 42505698 - MGP_AJ_P0065617 Igfbpl1 protein_coding protein_coding MGP_AJ_T0065618.1 MGP_AJ_G0028206.1 mouse_genomes_project 4 42490916 42494268 - Igfbpl1 protein_coding processed_transcript MGP_AJ_T0065280.1 MGP_AJ_G0028150.1 mouse_genomes_project 4 39588311 39589142 + Dnajb5 protein_coding processed_transcript MGP_AJ_T0065281.1 MGP_AJ_G0028150.1 mouse_genomes_project 4 39588748 39597171 + Dnajb5 protein_coding retained_intron MGP_AJ_T0065282.1 MGP_AJ_G0028150.1 mouse_genomes_project 4 39588837 39591700 + Dnajb5 protein_coding processed_transcript MGP_AJ_T0065283.1 MGP_AJ_G0028150.1 mouse_genomes_project 4 39589159 39597177 + MGP_AJ_P0065283 Dnajb5 protein_coding protein_coding MGP_AJ_T0065284.1 MGP_AJ_G0028150.1 mouse_genomes_project 4 39591491 39597162 + MGP_AJ_P0065284 Dnajb5 protein_coding protein_coding MGP_AJ_T0007953.1 MGP_AJ_G0006497.1 mouse_genomes_project 4 121154162 121160562 + 4933407E24Rik lincRNA lincRNA MGP_AJ_T0010622.1 MGP_AJ_G0008744.1 mouse_genomes_project 4 128537415 128537487 - Gm27445 miRNA miRNA MGP_AJ_T0065482.1 MGP_AJ_G0028178.1 mouse_genomes_project 4 40338707 40344536 - MGP_AJ_P0065482 Olfr70 protein_coding protein_coding MGP_AJ_T0014398.1 MGP_AJ_G0012493.1 mouse_genomes_project 4 4683205 4683665 - processed_pseudogene processed_pseudogene MGP_AJ_T0069605.1 MGP_AJ_G0029141.1 mouse_genomes_project 4 149832338 149843553 + MGP_AJ_P0069605 Gpr153 protein_coding protein_coding MGP_AJ_T0069606.1 MGP_AJ_G0029141.1 mouse_genomes_project 4 149832468 149843553 + MGP_AJ_P0069606 Gpr153 protein_coding protein_coding MGP_AJ_T0069607.1 MGP_AJ_G0029141.1 mouse_genomes_project 4 149837228 149843553 + MGP_AJ_P0069607 Gpr153 protein_coding protein_coding MGP_AJ_T0069608.1 MGP_AJ_G0029141.1 mouse_genomes_project 4 149840585 149843552 + Gpr153 protein_coding processed_transcript MGP_AJ_T0001414.1 MGP_AJ_G0001337.1 mouse_genomes_project 4 96043863 96046328 + TEC TEC MGP_AJ_T0067681.1 MGP_AJ_G0028693.1 mouse_genomes_project 4 119675273 119676831 + MGP_AJ_P0067681 Oxct2b protein_coding protein_coding MGP_AJ_T0014529.1 MGP_AJ_G0012624.1 mouse_genomes_project 4 42945412 42946351 - processed_pseudogene processed_pseudogene MGP_AJ_T0067035.1 MGP_AJ_G0028542.1 mouse_genomes_project 4 108491886 108601712 + MGP_AJ_P0067035 Spata6 protein_coding protein_coding MGP_AJ_T0067036.1 MGP_AJ_G0028542.1 mouse_genomes_project 4 108491911 108539632 + MGP_AJ_P0067036 Spata6 protein_coding protein_coding MGP_AJ_T0067037.1 MGP_AJ_G0028542.1 mouse_genomes_project 4 108491912 108578896 + Spata6 protein_coding processed_transcript MGP_AJ_T0067038.1 MGP_AJ_G0028542.1 mouse_genomes_project 4 108491940 108549155 + MGP_AJ_P0067038 Spata6 protein_coding protein_coding MGP_AJ_T0067039.1 MGP_AJ_G0028542.1 mouse_genomes_project 4 108491961 108539692 + Spata6 protein_coding processed_transcript MGP_AJ_T0067040.1 MGP_AJ_G0028542.1 mouse_genomes_project 4 108491965 108549875 + Spata6 protein_coding processed_transcript MGP_AJ_T0067041.1 MGP_AJ_G0028542.1 mouse_genomes_project 4 108492005 108550460 + Spata6 protein_coding processed_transcript MGP_AJ_T0067042.1 MGP_AJ_G0028542.1 mouse_genomes_project 4 108492031 108549925 + Spata6 protein_coding processed_transcript MGP_AJ_T0067043.1 MGP_AJ_G0028542.1 mouse_genomes_project 4 108492079 108600936 + MGP_AJ_P0067043 Spata6 protein_coding unknown_likely_coding MGP_AJ_T0067044.1 MGP_AJ_G0028542.1 mouse_genomes_project 4 108492107 108601754 + MGP_AJ_P0067044 Spata6 protein_coding protein_coding MGP_AJ_T0067045.1 MGP_AJ_G0028542.1 mouse_genomes_project 4 108545664 108600764 + Spata6 protein_coding processed_transcript MGP_AJ_T0067046.1 MGP_AJ_G0028542.1 mouse_genomes_project 4 108548425 108601704 + Spata6 protein_coding processed_transcript MGP_AJ_T0067047.1 MGP_AJ_G0028542.1 mouse_genomes_project 4 108548464 108551159 + Spata6 protein_coding processed_transcript MGP_AJ_T0067048.1 MGP_AJ_G0028542.1 mouse_genomes_project 4 108577702 108595378 + Spata6 protein_coding processed_transcript MGP_AJ_T0067049.1 MGP_AJ_G0028542.1 mouse_genomes_project 4 108594838 108600772 + Spata6 protein_coding processed_transcript MGP_AJ_T0068265.1 MGP_AJ_G0028820.1 mouse_genomes_project 4 128468607 128482548 - MGP_AJ_P0068265 Epb41 protein_coding protein_coding MGP_AJ_T0068266.1 MGP_AJ_G0028820.1 mouse_genomes_project 4 128468609 128482585 - Epb41 protein_coding processed_transcript MGP_AJ_T0068267.1 MGP_AJ_G0028820.1 mouse_genomes_project 4 128468609 128622680 - Epb41 protein_coding processed_transcript MGP_AJ_T0068268.1 MGP_AJ_G0028820.1 mouse_genomes_project 4 128468609 128513043 - MGP_AJ_P0068268 Epb41 protein_coding protein_coding MGP_AJ_T0068269.1 MGP_AJ_G0028820.1 mouse_genomes_project 4 128468609 128622651 - MGP_AJ_P0068269 Epb41 protein_coding protein_coding MGP_AJ_T0068270.1 MGP_AJ_G0028820.1 mouse_genomes_project 4 128468609 128548994 - MGP_AJ_P0068270 Epb41 protein_coding protein_coding MGP_AJ_T0068271.1 MGP_AJ_G0028820.1 mouse_genomes_project 4 128468609 128552638 - MGP_AJ_P0068271 Epb41 protein_coding protein_coding MGP_AJ_T0068272.1 MGP_AJ_G0028820.1 mouse_genomes_project 4 128468609 128513074 - MGP_AJ_P0068272 Epb41 protein_coding protein_coding MGP_AJ_T0068273.1 MGP_AJ_G0028820.1 mouse_genomes_project 4 128468609 128552637 - MGP_AJ_P0068273 Epb41 protein_coding protein_coding MGP_AJ_T0068274.1 MGP_AJ_G0028820.1 mouse_genomes_project 4 128468609 128622651 - MGP_AJ_P0068274 Epb41 protein_coding protein_coding MGP_AJ_T0068275.1 MGP_AJ_G0028820.1 mouse_genomes_project 4 128468625 128594181 - MGP_AJ_P0068275 Epb41 protein_coding protein_coding MGP_AJ_T0068276.1 MGP_AJ_G0028820.1 mouse_genomes_project 4 128468625 128618089 - MGP_AJ_P0068276 Epb41 protein_coding protein_coding MGP_AJ_T0068277.1 MGP_AJ_G0028820.1 mouse_genomes_project 4 128468625 128594181 - MGP_AJ_P0068277 Epb41 protein_coding protein_coding MGP_AJ_T0068278.1 MGP_AJ_G0028820.1 mouse_genomes_project 4 128469325 128618089 - Epb41 protein_coding processed_transcript MGP_AJ_T0068279.1 MGP_AJ_G0028820.1 mouse_genomes_project 4 128471706 128552631 - MGP_AJ_P0068279 Epb41 protein_coding protein_coding MGP_AJ_T0068280.1 MGP_AJ_G0028820.1 mouse_genomes_project 4 128500225 128555837 - MGP_AJ_P0068280 Epb41 protein_coding unknown_likely_coding MGP_AJ_T0068281.1 MGP_AJ_G0028820.1 mouse_genomes_project 4 128502817 128594194 - MGP_AJ_P0068281 Epb41 protein_coding protein_coding MGP_AJ_T0068282.1 MGP_AJ_G0028820.1 mouse_genomes_project 4 128534748 128545504 - Epb41 protein_coding processed_transcript MGP_AJ_T0068283.1 MGP_AJ_G0028820.1 mouse_genomes_project 4 128548975 128622623 - Epb41 protein_coding processed_transcript MGP_AJ_T0066206.1 MGP_AJ_G0028363.1 mouse_genomes_project 4 79919046 80026594 - MGP_AJ_P0066206 Ttc39b protein_coding protein_coding MGP_AJ_T0066207.1 MGP_AJ_G0028363.1 mouse_genomes_project 4 79925189 79931974 - Ttc39b protein_coding retained_intron MGP_AJ_T0066208.1 MGP_AJ_G0028363.1 mouse_genomes_project 4 79938546 80026578 - MGP_AJ_P0066208 Ttc39b protein_coding protein_coding MGP_AJ_T0066209.1 MGP_AJ_G0028363.1 mouse_genomes_project 4 79946316 79964604 - Ttc39b protein_coding processed_transcript MGP_AJ_T0066210.1 MGP_AJ_G0028363.1 mouse_genomes_project 4 79951699 79983584 - MGP_AJ_P0066210 Ttc39b protein_coding protein_coding MGP_AJ_T0066211.1 MGP_AJ_G0028363.1 mouse_genomes_project 4 79957893 80026528 - MGP_AJ_P0066211 Ttc39b protein_coding protein_coding MGP_AJ_T0066212.1 MGP_AJ_G0028363.1 mouse_genomes_project 4 79958024 79977892 - MGP_AJ_P0066212 Ttc39b protein_coding protein_coding MGP_AJ_T0066391.1 MGP_AJ_G0028414.1 mouse_genomes_project 4 91355853 91408206 + MGP_AJ_P0066391 Ift74 protein_coding protein_coding MGP_AJ_T0066392.1 MGP_AJ_G0028414.1 mouse_genomes_project 4 91355853 91438078 + MGP_AJ_P0066392 Ift74 protein_coding protein_coding MGP_AJ_T0066395.1 MGP_AJ_G0028414.1 mouse_genomes_project 4 91423022 91431459 + Ift74 protein_coding processed_transcript MGP_AJ_T0066692.1 MGP_AJ_G0028484.1 mouse_genomes_project 4 103395659 103422587 - MGP_AJ_P0066692 Lexm protein_coding protein_coding MGP_AJ_T0066693.1 MGP_AJ_G0028484.1 mouse_genomes_project 4 103395659 103422590 - MGP_AJ_P0066693 Lexm protein_coding nonsense_mediated_decay MGP_AJ_T0066694.1 MGP_AJ_G0028484.1 mouse_genomes_project 4 103395659 103412817 - MGP_AJ_P0066694 Lexm protein_coding nonsense_mediated_decay MGP_AJ_T0066695.1 MGP_AJ_G0028484.1 mouse_genomes_project 4 103396060 103422587 - MGP_AJ_P0066695 Lexm protein_coding protein_coding MGP_AJ_T0069937.1 MGP_AJ_G0029201.1 mouse_genomes_project 4 153487881 153507704 + Cpsf3l protein_coding processed_transcript MGP_AJ_T0069938.1 MGP_AJ_G0029201.1 mouse_genomes_project 4 153487881 153508318 + MGP_AJ_P0069938 Cpsf3l protein_coding protein_coding MGP_AJ_T0069939.1 MGP_AJ_G0029201.1 mouse_genomes_project 4 153487881 153507690 + MGP_AJ_P0069939 Cpsf3l protein_coding protein_coding MGP_AJ_T0069940.1 MGP_AJ_G0029201.1 mouse_genomes_project 4 153487902 153490679 + Cpsf3l protein_coding retained_intron MGP_AJ_T0069941.1 MGP_AJ_G0029201.1 mouse_genomes_project 4 153487950 153505930 + MGP_AJ_P0069941 Cpsf3l protein_coding nonsense_mediated_decay MGP_AJ_T0069942.1 MGP_AJ_G0029201.1 mouse_genomes_project 4 153506789 153507492 + Cpsf3l protein_coding retained_intron MGP_AJ_T0069944.1 MGP_AJ_G0029201.1 mouse_genomes_project 4 153507127 153507738 + Cpsf3l protein_coding retained_intron MGP_AJ_T0067072.1 MGP_AJ_G0028547.1 mouse_genomes_project 4 108879382 108894324 + MGP_AJ_P0067072 Skint2 protein_coding protein_coding MGP_AJ_T0067073.1 MGP_AJ_G0028547.1 mouse_genomes_project 4 108879525 108919932 + MGP_AJ_P0067073 Skint2 protein_coding protein_coding MGP_AJ_T0067074.1 MGP_AJ_G0028547.1 mouse_genomes_project 4 108879536 108915466 + Skint2 protein_coding processed_transcript MGP_AJ_T0067075.1 MGP_AJ_G0028547.1 mouse_genomes_project 4 108882369 108915466 + MGP_AJ_P0067075 Skint2 protein_coding protein_coding MGP_AJ_T0069120.1 MGP_AJ_G0029018.1 mouse_genomes_project 4 138577411 138581883 + Casp9 protein_coding processed_transcript MGP_AJ_T0069121.1 MGP_AJ_G0029018.1 mouse_genomes_project 4 138577509 138589371 + MGP_AJ_P0069121 Casp9 protein_coding protein_coding MGP_AJ_T0069122.1 MGP_AJ_G0029018.1 mouse_genomes_project 4 138577643 138580371 + Casp9 protein_coding processed_transcript MGP_AJ_T0069123.1 MGP_AJ_G0029018.1 mouse_genomes_project 4 138577654 138599907 + MGP_AJ_P0069123 Casp9 protein_coding protein_coding MGP_AJ_T0069124.1 MGP_AJ_G0029018.1 mouse_genomes_project 4 138598686 138599905 + Casp9 protein_coding processed_transcript MGP_AJ_T0018047.1 MGP_AJ_G0015523.1 mouse_genomes_project 4 49446824 49461706 + 4930552N02Rik processed_transcript processed_transcript MGP_AJ_T0069074.1 MGP_AJ_G0029006.1 mouse_genomes_project 4 138189706 138194235 + MGP_AJ_P0069074 Hspb7 protein_coding protein_coding MGP_AJ_T0069718.1 MGP_AJ_G0029160.1 mouse_genomes_project 4 151883117 151905751 - Arhgef16 protein_coding retained_intron MGP_AJ_T0069719.1 MGP_AJ_G0029160.1 mouse_genomes_project 4 151883117 151887127 - Arhgef16 protein_coding retained_intron MGP_AJ_T0069720.1 MGP_AJ_G0029160.1 mouse_genomes_project 4 151883117 151905913 - MGP_AJ_P0069720 Arhgef16 protein_coding protein_coding MGP_AJ_T0069721.1 MGP_AJ_G0029160.1 mouse_genomes_project 4 151883381 151907519 - MGP_AJ_P0069721 Arhgef16 protein_coding protein_coding MGP_AJ_T0069722.1 MGP_AJ_G0029160.1 mouse_genomes_project 4 151886645 151892952 - Arhgef16 protein_coding processed_transcript MGP_AJ_T0069723.1 MGP_AJ_G0029160.1 mouse_genomes_project 4 151892903 151905751 - MGP_AJ_P0069723 Arhgef16 protein_coding protein_coding MGP_AJ_T0069724.1 MGP_AJ_G0029160.1 mouse_genomes_project 4 151896902 151907532 - MGP_AJ_P0069724 Arhgef16 protein_coding protein_coding MGP_AJ_T0010591.1 MGP_AJ_G0008713.1 mouse_genomes_project 4 55086382 55086469 - Mir3095 miRNA miRNA MGP_AJ_T0101183.1 MGP_AJ_G0039149.1 mouse_genomes_project 4 415294 415431 - Gm24125 snoRNA snoRNA MGP_AJ_T0099919.1 MGP_AJ_G0037885.1 mouse_genomes_project 4 54419680 54419784 + Gm24277 snRNA snRNA MGP_AJ_T0069254.1 MGP_AJ_G0029075.1 mouse_genomes_project 4 145318201 145348335 - MGP_AJ_P0069254 Plod1 protein_coding protein_coding MGP_AJ_T0069255.1 MGP_AJ_G0029075.1 mouse_genomes_project 4 145327392 145332692 - MGP_AJ_P0069255 Plod1 protein_coding protein_coding MGP_AJ_T0069256.1 MGP_AJ_G0029075.1 mouse_genomes_project 4 145334058 145348310 - Plod1 protein_coding retained_intron MGP_AJ_T0069257.1 MGP_AJ_G0029075.1 mouse_genomes_project 4 145334445 145335323 - Plod1 protein_coding retained_intron MGP_AJ_T0069258.1 MGP_AJ_G0029075.1 mouse_genomes_project 4 145339200 145348293 - MGP_AJ_P0069258 Plod1 protein_coding protein_coding MGP_AJ_T0069259.1 MGP_AJ_G0029075.1 mouse_genomes_project 4 145343264 145348276 - Plod1 protein_coding processed_transcript MGP_AJ_T0014767.1 MGP_AJ_G0012862.1 mouse_genomes_project 4 123167721 123168064 - processed_pseudogene processed_pseudogene MGP_AJ_T0067495.1 MGP_AJ_G0028645.1 mouse_genomes_project 4 115340221 115341163 - MGP_AJ_P0067495 Olfr1329 protein_coding protein_coding MGP_AJ_T0018068.1 MGP_AJ_G0015538.1 mouse_genomes_project 4 92688123 92696557 - 9530080O11Rik processed_transcript processed_transcript MGP_AJ_T0018069.1 MGP_AJ_G0015538.1 mouse_genomes_project 4 92688651 92695937 - 9530080O11Rik processed_transcript processed_transcript MGP_AJ_T0069455.1 MGP_AJ_G0029113.1 mouse_genomes_project 4 147453030 147476941 - MGP_AJ_P0069455 H6pd protein_coding protein_coding MGP_AJ_T0069456.1 MGP_AJ_G0029113.1 mouse_genomes_project 4 147453030 147483183 - MGP_AJ_P0069456 H6pd protein_coding protein_coding MGP_AJ_T0069457.1 MGP_AJ_G0029113.1 mouse_genomes_project 4 147469667 147475076 - MGP_AJ_P0069457 H6pd protein_coding protein_coding MGP_AJ_T0069458.1 MGP_AJ_G0029113.1 mouse_genomes_project 4 147473595 147475101 - H6pd protein_coding processed_transcript MGP_AJ_T0065464.1 MGP_AJ_G0028174.1 mouse_genomes_project 4 40295270 40296095 - MGP_AJ_P0065464 Spag8 protein_coding protein_coding MGP_AJ_T0065465.1 MGP_AJ_G0028174.1 mouse_genomes_project 4 40295270 40297488 - MGP_AJ_P0065465 Spag8 protein_coding protein_coding MGP_AJ_T0065466.1 MGP_AJ_G0028174.1 mouse_genomes_project 4 40295611 40297530 - MGP_AJ_P0065466 Spag8 protein_coding protein_coding MGP_AJ_T0064765.1 MGP_AJ_G0028017.1 mouse_genomes_project 4 8594277 8643638 - MGP_AJ_P0064765 Tmem67 protein_coding protein_coding MGP_AJ_T0064766.1 MGP_AJ_G0028017.1 mouse_genomes_project 4 8594285 8643619 - MGP_AJ_P0064766 Tmem67 protein_coding nonsense_mediated_decay MGP_AJ_T0064767.1 MGP_AJ_G0028017.1 mouse_genomes_project 4 8594567 8645696 - MGP_AJ_P0064767 Tmem67 protein_coding protein_coding MGP_AJ_T0064768.1 MGP_AJ_G0028017.1 mouse_genomes_project 4 8616870 8643688 - Tmem67 protein_coding retained_intron MGP_AJ_T0064769.1 MGP_AJ_G0028017.1 mouse_genomes_project 4 8624768 8643608 - Tmem67 protein_coding retained_intron MGP_AJ_T0064770.1 MGP_AJ_G0028017.1 mouse_genomes_project 4 8634265 8643613 - Tmem67 protein_coding retained_intron MGP_AJ_T0067974.1 MGP_AJ_G0028765.1 mouse_genomes_project 4 125423649 125436860 + MGP_AJ_P0067974 A3galt2 protein_coding protein_coding MGP_AJ_T0067975.1 MGP_AJ_G0028765.1 mouse_genomes_project 4 125427543 125437570 + MGP_AJ_P0067975 A3galt2 protein_coding protein_coding MGP_AJ_T0014694.1 MGP_AJ_G0012789.1 mouse_genomes_project 4 102900050 102900382 + processed_pseudogene processed_pseudogene MGP_AJ_T0069761.1 MGP_AJ_G0029169.1 mouse_genomes_project 4 152567789 152584513 + MGP_AJ_P0069761 Pank4 protein_coding protein_coding MGP_AJ_T0069762.1 MGP_AJ_G0029169.1 mouse_genomes_project 4 152567799 152584580 + MGP_AJ_P0069762 Pank4 protein_coding protein_coding MGP_AJ_T0069763.1 MGP_AJ_G0029169.1 mouse_genomes_project 4 152573641 152584531 + MGP_AJ_P0069763 Pank4 protein_coding nonsense_mediated_decay MGP_AJ_T0069764.1 MGP_AJ_G0029169.1 mouse_genomes_project 4 152578175 152584580 + Pank4 protein_coding retained_intron MGP_AJ_T0069765.1 MGP_AJ_G0029169.1 mouse_genomes_project 4 152579913 152582797 + Pank4 protein_coding retained_intron MGP_AJ_T0069766.1 MGP_AJ_G0029169.1 mouse_genomes_project 4 152579921 152582867 + Pank4 protein_coding retained_intron MGP_AJ_T0069767.1 MGP_AJ_G0029169.1 mouse_genomes_project 4 152580220 152584576 + Pank4 protein_coding retained_intron MGP_AJ_T0010621.1 MGP_AJ_G0008743.1 mouse_genomes_project 4 126446405 126446531 - Gm28017 miRNA miRNA MGP_AJ_T0067058.1 MGP_AJ_G0028544.1 mouse_genomes_project 4 108682797 108698267 + Skint8 protein_coding processed_transcript MGP_AJ_T0067059.1 MGP_AJ_G0028544.1 mouse_genomes_project 4 108682803 108702755 + MGP_AJ_P0067059 Skint8 protein_coding protein_coding MGP_AJ_T0067060.1 MGP_AJ_G0028544.1 mouse_genomes_project 4 108682898 108700959 + Skint8 protein_coding retained_intron MGP_AJ_T0067061.1 MGP_AJ_G0028544.1 mouse_genomes_project 4 108682962 108713203 + MGP_AJ_P0067061 Skint8 protein_coding protein_coding MGP_AJ_T0067062.1 MGP_AJ_G0028544.1 mouse_genomes_project 4 108694703 108698415 + Skint8 protein_coding processed_transcript MGP_AJ_T0014658.1 MGP_AJ_G0012753.1 mouse_genomes_project 4 90571577 90571835 + processed_pseudogene processed_pseudogene MGP_AJ_T0014586.1 MGP_AJ_G0012681.1 mouse_genomes_project 4 65090853 65092898 - processed_pseudogene processed_pseudogene MGP_AJ_T0065238.1 MGP_AJ_G0028136.1 mouse_genomes_project 4 38226474 38227222 - MGP_AJ_P0065238 protein_coding protein_coding MGP_AJ_T0065240.1 MGP_AJ_G0028136.1 mouse_genomes_project 4 38226478 38231895 - MGP_AJ_P0065240 protein_coding protein_coding MGP_AJ_T0065252.1 MGP_AJ_G0028136.1 mouse_genomes_project 4 38231483 38236901 - protein_coding processed_transcript MGP_AJ_T0065350.1 MGP_AJ_G0028158.1 mouse_genomes_project 4 39905570 39979695 + Atp8b5 protein_coding retained_intron MGP_AJ_T0065351.1 MGP_AJ_G0028158.1 mouse_genomes_project 4 39905581 40011864 + MGP_AJ_P0065351 Atp8b5 protein_coding protein_coding MGP_AJ_T0065352.1 MGP_AJ_G0028158.1 mouse_genomes_project 4 39905596 40011866 + MGP_AJ_P0065352 Atp8b5 protein_coding nonsense_mediated_decay MGP_AJ_T0065353.1 MGP_AJ_G0028158.1 mouse_genomes_project 4 39905596 39959987 + MGP_AJ_P0065353 Atp8b5 protein_coding nonsense_mediated_decay MGP_AJ_T0065354.1 MGP_AJ_G0028158.1 mouse_genomes_project 4 39905602 39961673 + MGP_AJ_P0065354 Atp8b5 protein_coding protein_coding MGP_AJ_T0068561.1 MGP_AJ_G0028883.1 mouse_genomes_project 4 130943620 130953231 + MGP_AJ_P0068561 Slc30a2 protein_coding protein_coding MGP_AJ_T0068562.1 MGP_AJ_G0028883.1 mouse_genomes_project 4 130943725 130953091 + MGP_AJ_P0068562 Slc30a2 protein_coding protein_coding MGP_AJ_T0004420.1 MGP_AJ_G0003851.1 mouse_genomes_project 4 5759901 5763453 - Gm11816 antisense antisense MGP_AJ_T0004421.1 MGP_AJ_G0003851.1 mouse_genomes_project 4 5761799 5763395 - Gm11816 antisense antisense MGP_AJ_T0067831.1 MGP_AJ_G0028733.1 mouse_genomes_project 4 122788294 122830685 - MGP_AJ_P0067831 Thrap3 protein_coding protein_coding MGP_AJ_T0067832.1 MGP_AJ_G0028733.1 mouse_genomes_project 4 122788541 122830567 - MGP_AJ_P0067832 Thrap3 protein_coding unknown_likely_coding MGP_AJ_T0067833.1 MGP_AJ_G0028733.1 mouse_genomes_project 4 122789753 122801630 - MGP_AJ_P0067833 Thrap3 protein_coding protein_coding MGP_AJ_T0067834.1 MGP_AJ_G0028733.1 mouse_genomes_project 4 122789767 122791689 - Thrap3 protein_coding processed_transcript MGP_AJ_T0067835.1 MGP_AJ_G0028733.1 mouse_genomes_project 4 122791260 122799685 - MGP_AJ_P0067835 Thrap3 protein_coding nonsense_mediated_decay MGP_AJ_T0067836.1 MGP_AJ_G0028733.1 mouse_genomes_project 4 122804473 122830537 - Thrap3 protein_coding retained_intron MGP_AJ_T0067837.1 MGP_AJ_G0028733.1 mouse_genomes_project 4 122806257 122820851 - MGP_AJ_P0067837 Thrap3 protein_coding nonsense_mediated_decay MGP_AJ_T0067838.1 MGP_AJ_G0028733.1 mouse_genomes_project 4 122806485 122829065 - MGP_AJ_P0067838 Thrap3 protein_coding protein_coding MGP_AJ_T0067839.1 MGP_AJ_G0028733.1 mouse_genomes_project 4 122806494 122830514 - MGP_AJ_P0067839 Thrap3 protein_coding protein_coding MGP_AJ_T0067840.1 MGP_AJ_G0028733.1 mouse_genomes_project 4 122812527 122830548 - Thrap3 protein_coding retained_intron MGP_AJ_T0067841.1 MGP_AJ_G0028733.1 mouse_genomes_project 4 122812708 122830584 - Thrap3 protein_coding retained_intron MGP_AJ_T0067842.1 MGP_AJ_G0028733.1 mouse_genomes_project 4 122812946 122830572 - MGP_AJ_P0067842 Thrap3 protein_coding protein_coding MGP_AJ_T0067843.1 MGP_AJ_G0028733.1 mouse_genomes_project 4 122812952 122830301 - MGP_AJ_P0067843 Thrap3 protein_coding protein_coding MGP_AJ_T0067844.1 MGP_AJ_G0028733.1 mouse_genomes_project 4 122812958 122830315 - MGP_AJ_P0067844 Thrap3 protein_coding protein_coding MGP_AJ_T0067845.1 MGP_AJ_G0028733.1 mouse_genomes_project 4 122820375 122830595 - Thrap3 protein_coding processed_transcript MGP_AJ_T0008026.1 MGP_AJ_G0006548.1 mouse_genomes_project 4 145728985 145738597 + Gm13206 lincRNA lincRNA MGP_AJ_T0010619.1 MGP_AJ_G0008741.1 mouse_genomes_project 4 126235412 126235541 - Mir8119 miRNA miRNA MGP_AJ_T0065006.1 MGP_AJ_G0028083.1 mouse_genomes_project 4 30458637 30483130 - MGP_AJ_P0065006 Spaca1 protein_coding protein_coding MGP_AJ_T0065007.1 MGP_AJ_G0028083.1 mouse_genomes_project 4 30458639 30474120 - MGP_AJ_P0065007 Spaca1 protein_coding protein_coding MGP_AJ_T0065008.1 MGP_AJ_G0028083.1 mouse_genomes_project 4 30462076 30483282 - MGP_AJ_P0065008 Spaca1 protein_coding protein_coding MGP_AJ_T0067118.1 MGP_AJ_G0028565.1 mouse_genomes_project 4 112001475 112009512 + protein_coding processed_transcript MGP_AJ_T0067119.1 MGP_AJ_G0028565.1 mouse_genomes_project 4 112001481 112009042 + MGP_AJ_P0067119 protein_coding unknown_likely_coding MGP_AJ_T0066086.1 MGP_AJ_G0028336.1 mouse_genomes_project 4 60732519 60794045 - MGP_AJ_P0066086 Tnc protein_coding protein_coding MGP_AJ_T0066087.1 MGP_AJ_G0028336.1 mouse_genomes_project 4 60732519 60821166 - MGP_AJ_P0066087 Tnc protein_coding protein_coding MGP_AJ_T0066088.1 MGP_AJ_G0028336.1 mouse_genomes_project 4 60732519 60794045 - MGP_AJ_P0066088 Tnc protein_coding protein_coding MGP_AJ_T0066089.1 MGP_AJ_G0028336.1 mouse_genomes_project 4 60785988 60794045 - MGP_AJ_P0066089 Tnc protein_coding protein_coding MGP_AJ_T0014461.1 MGP_AJ_G0012556.1 mouse_genomes_project 4 21996121 21996612 - processed_pseudogene processed_pseudogene MGP_AJ_T0014770.1 MGP_AJ_G0012865.1 mouse_genomes_project 4 123643171 123643336 + processed_pseudogene processed_pseudogene MGP_AJ_T0007862.1 MGP_AJ_G0006424.1 mouse_genomes_project 4 52608953 52634283 - Gm12519 lincRNA lincRNA MGP_AJ_T0064771.1 MGP_AJ_G0028018.1 mouse_genomes_project 4 8645061 8650545 + protein_coding processed_transcript MGP_AJ_T0064772.1 MGP_AJ_G0028018.1 mouse_genomes_project 4 8645064 8657808 + MGP_AJ_P0064772 protein_coding protein_coding MGP_AJ_T0064773.1 MGP_AJ_G0028018.1 mouse_genomes_project 4 8645082 8650885 + protein_coding processed_transcript MGP_AJ_T0064774.1 MGP_AJ_G0028018.1 mouse_genomes_project 4 8645114 8657839 + MGP_AJ_P0064774 protein_coding protein_coding MGP_AJ_T0067088.1 MGP_AJ_G0028555.1 mouse_genomes_project 4 111353415 111401576 + MGP_AJ_P0067088 Stil protein_coding protein_coding MGP_AJ_T0067089.1 MGP_AJ_G0028555.1 mouse_genomes_project 4 111353438 111397764 + MGP_AJ_P0067089 Stil protein_coding protein_coding MGP_AJ_T0067090.1 MGP_AJ_G0028555.1 mouse_genomes_project 4 111353438 111401576 + MGP_AJ_P0067090 Stil protein_coding nonsense_mediated_decay MGP_AJ_T0067091.1 MGP_AJ_G0028555.1 mouse_genomes_project 4 111360016 111370440 + MGP_AJ_P0067091 Stil protein_coding nonsense_mediated_decay MGP_AJ_T0067092.1 MGP_AJ_G0028555.1 mouse_genomes_project 4 111363372 111377177 + Stil protein_coding processed_transcript MGP_AJ_T0067093.1 MGP_AJ_G0028555.1 mouse_genomes_project 4 111370374 111378719 + Stil protein_coding retained_intron MGP_AJ_T0010580.1 MGP_AJ_G0008702.1 mouse_genomes_project 4 33077187 33077264 + Mir873b miRNA miRNA MGP_AJ_T0068045.1 MGP_AJ_G0028779.1 mouse_genomes_project 4 126010257 126028986 + MGP_AJ_P0068045 Zbtb8os protein_coding nonsense_mediated_decay MGP_AJ_T0068046.1 MGP_AJ_G0028779.1 mouse_genomes_project 4 126010569 126021427 + MGP_AJ_P0068046 Zbtb8os protein_coding protein_coding MGP_AJ_T0068047.1 MGP_AJ_G0028779.1 mouse_genomes_project 4 126010609 126021570 + MGP_AJ_P0068047 Zbtb8os protein_coding nonsense_mediated_decay MGP_AJ_T0068048.1 MGP_AJ_G0028779.1 mouse_genomes_project 4 126018495 126021467 + Zbtb8os protein_coding retained_intron MGP_AJ_T0066327.1 MGP_AJ_G0028381.1 mouse_genomes_project 4 85186800 85230018 - MGP_AJ_P0066327 Hacd4 protein_coding protein_coding MGP_AJ_T0066330.1 MGP_AJ_G0028381.1 mouse_genomes_project 4 85201455 85230031 - MGP_AJ_P0066330 Hacd4 protein_coding protein_coding MGP_AJ_T0066331.1 MGP_AJ_G0028381.1 mouse_genomes_project 4 85204044 85230029 - MGP_AJ_P0066331 Hacd4 protein_coding protein_coding MGP_AJ_T0066101.1 MGP_AJ_G0028341.1 mouse_genomes_project 4 65544637 65750839 - MGP_AJ_P0066101 Brinp1 protein_coding protein_coding MGP_AJ_T0066102.1 MGP_AJ_G0028341.1 mouse_genomes_project 4 65579258 65629426 - Brinp1 protein_coding processed_transcript MGP_AJ_T0066103.1 MGP_AJ_G0028341.1 mouse_genomes_project 4 65611485 65614307 - Brinp1 protein_coding processed_transcript MGP_AJ_T0067659.1 MGP_AJ_G0028687.1 mouse_genomes_project 4 119395022 119422125 - MGP_AJ_P0067659 Cap1 protein_coding protein_coding MGP_AJ_T0067660.1 MGP_AJ_G0028687.1 mouse_genomes_project 4 119395022 119422258 - MGP_AJ_P0067660 Cap1 protein_coding protein_coding MGP_AJ_T0067661.1 MGP_AJ_G0028687.1 mouse_genomes_project 4 119395022 119422270 - MGP_AJ_P0067661 Cap1 protein_coding protein_coding MGP_AJ_T0067662.1 MGP_AJ_G0028687.1 mouse_genomes_project 4 119398725 119400938 - Cap1 protein_coding processed_transcript MGP_AJ_T0067663.1 MGP_AJ_G0028687.1 mouse_genomes_project 4 119403637 119422179 - MGP_AJ_P0067663 Cap1 protein_coding protein_coding MGP_AJ_T0067664.1 MGP_AJ_G0028687.1 mouse_genomes_project 4 119406985 119422074 - Cap1 protein_coding processed_transcript MGP_AJ_T0067665.1 MGP_AJ_G0028687.1 mouse_genomes_project 4 119408076 119422078 - Cap1 protein_coding processed_transcript MGP_AJ_T0067962.1 MGP_AJ_G0028764.1 mouse_genomes_project 4 125321339 125421274 + MGP_AJ_P0067962 Phc2 protein_coding protein_coding MGP_AJ_T0067963.1 MGP_AJ_G0028764.1 mouse_genomes_project 4 125321375 125379384 + MGP_AJ_P0067963 Phc2 protein_coding protein_coding MGP_AJ_T0067964.1 MGP_AJ_G0028764.1 mouse_genomes_project 4 125355942 125372853 + Phc2 protein_coding retained_intron MGP_AJ_T0067965.1 MGP_AJ_G0028764.1 mouse_genomes_project 4 125355999 125421274 + MGP_AJ_P0067965 Phc2 protein_coding protein_coding MGP_AJ_T0067966.1 MGP_AJ_G0028764.1 mouse_genomes_project 4 125377353 125392252 + Phc2 protein_coding retained_intron MGP_AJ_T0067967.1 MGP_AJ_G0028764.1 mouse_genomes_project 4 125395404 125421274 + MGP_AJ_P0067967 Phc2 protein_coding nonsense_mediated_decay MGP_AJ_T0067968.1 MGP_AJ_G0028764.1 mouse_genomes_project 4 125395408 125421274 + MGP_AJ_P0067968 Phc2 protein_coding protein_coding MGP_AJ_T0067969.1 MGP_AJ_G0028764.1 mouse_genomes_project 4 125395505 125416614 + MGP_AJ_P0067969 Phc2 protein_coding nonsense_mediated_decay MGP_AJ_T0067970.1 MGP_AJ_G0028764.1 mouse_genomes_project 4 125395533 125413411 + MGP_AJ_P0067970 Phc2 protein_coding protein_coding MGP_AJ_T0067971.1 MGP_AJ_G0028764.1 mouse_genomes_project 4 125395756 125416471 + MGP_AJ_P0067971 Phc2 protein_coding protein_coding MGP_AJ_T0067972.1 MGP_AJ_G0028764.1 mouse_genomes_project 4 125395794 125411874 + MGP_AJ_P0067972 Phc2 protein_coding protein_coding MGP_AJ_T0067973.1 MGP_AJ_G0028764.1 mouse_genomes_project 4 125395805 125415529 + MGP_AJ_P0067973 Phc2 protein_coding protein_coding MGP_AJ_T0014666.1 MGP_AJ_G0012761.1 mouse_genomes_project 4 94864517 94864973 - processed_pseudogene processed_pseudogene MGP_AJ_T0011576.1 MGP_AJ_G0009698.1 mouse_genomes_project 4 98303688 98303962 + Gm22533 misc_RNA misc_RNA MGP_AJ_T0069076.1 MGP_AJ_G0029008.1 mouse_genomes_project 4 138213669 138235936 + MGP_AJ_P0069076 Zbtb17 protein_coding protein_coding MGP_AJ_T0069077.1 MGP_AJ_G0029008.1 mouse_genomes_project 4 138213699 138236641 + Zbtb17 protein_coding processed_transcript MGP_AJ_T0069078.1 MGP_AJ_G0029008.1 mouse_genomes_project 4 138213714 138235936 + Zbtb17 protein_coding processed_transcript MGP_AJ_T0069079.1 MGP_AJ_G0029008.1 mouse_genomes_project 4 138213721 138228040 + Zbtb17 protein_coding processed_transcript MGP_AJ_T0069080.1 MGP_AJ_G0029008.1 mouse_genomes_project 4 138232093 138233758 + Zbtb17 protein_coding processed_transcript MGP_AJ_T0069081.1 MGP_AJ_G0029008.1 mouse_genomes_project 4 138233528 138234779 + Zbtb17 protein_coding processed_transcript MGP_AJ_T0069082.1 MGP_AJ_G0029008.1 mouse_genomes_project 4 138234125 138235780 + Zbtb17 protein_coding processed_transcript MGP_AJ_T0101204.1 MGP_AJ_G0039170.1 mouse_genomes_project 4 41071753 41071880 - Gm24376 snoRNA snoRNA MGP_AJ_T0098675.1 MGP_AJ_G0036659.1 mouse_genomes_project 4 37750544 37750659 + n-R5s183 rRNA rRNA MGP_AJ_T0098682.1 MGP_AJ_G0036666.1 mouse_genomes_project 4 91791379 91791493 + n-R5s189 rRNA rRNA MGP_AJ_T0099966.1 MGP_AJ_G0037932.1 mouse_genomes_project 4 129503103 129503210 - Gm24913 snRNA snRNA MGP_AJ_T0099026.1 MGP_AJ_G0037003.1 mouse_genomes_project 4 127293357 127297285 + Gm12971 sense_intronic sense_intronic MGP_AJ_T0007900.1 MGP_AJ_G0006457.1 mouse_genomes_project 4 90235143 90458793 - Gm12649 lincRNA lincRNA MGP_AJ_T0099968.1 MGP_AJ_G0037934.1 mouse_genomes_project 4 130465076 130465176 - Gm22523 snRNA snRNA MGP_AJ_T0066988.1 MGP_AJ_G0028533.1 mouse_genomes_project 4 106213625 106235099 + MGP_AJ_P0066988 Ttc39a protein_coding protein_coding MGP_AJ_T0066989.1 MGP_AJ_G0028533.1 mouse_genomes_project 4 106214087 106251544 + MGP_AJ_P0066989 Ttc39a protein_coding protein_coding MGP_AJ_T0066990.1 MGP_AJ_G0028533.1 mouse_genomes_project 4 106214110 106231206 + MGP_AJ_P0066990 Ttc39a protein_coding protein_coding MGP_AJ_T0066991.1 MGP_AJ_G0028533.1 mouse_genomes_project 4 106214129 106229911 + Ttc39a protein_coding processed_transcript MGP_AJ_T0066992.1 MGP_AJ_G0028533.1 mouse_genomes_project 4 106221762 106235167 + MGP_AJ_P0066992 Ttc39a protein_coding protein_coding MGP_AJ_T0066993.1 MGP_AJ_G0028533.1 mouse_genomes_project 4 106222635 106251181 + MGP_AJ_P0066993 Ttc39a protein_coding protein_coding MGP_AJ_T0066994.1 MGP_AJ_G0028533.1 mouse_genomes_project 4 106222761 106228349 + Ttc39a protein_coding processed_transcript MGP_AJ_T0066995.1 MGP_AJ_G0028533.1 mouse_genomes_project 4 106227913 106233330 + MGP_AJ_P0066995 Ttc39a protein_coding protein_coding MGP_AJ_T0014838.1 MGP_AJ_G0012933.1 mouse_genomes_project 4 151646089 151646779 - processed_pseudogene processed_pseudogene MGP_AJ_T0066385.1 MGP_AJ_G0028413.1 mouse_genomes_project 4 91309036 91317976 - Plaa protein_coding processed_transcript MGP_AJ_T0066386.1 MGP_AJ_G0028413.1 mouse_genomes_project 4 91310689 91344533 - MGP_AJ_P0066386 Plaa protein_coding protein_coding MGP_AJ_T0066387.1 MGP_AJ_G0028413.1 mouse_genomes_project 4 91313209 91325218 - MGP_AJ_P0066387 Plaa protein_coding protein_coding MGP_AJ_T0066388.1 MGP_AJ_G0028413.1 mouse_genomes_project 4 91315449 91325197 - Plaa protein_coding processed_transcript MGP_AJ_T0066389.1 MGP_AJ_G0028413.1 mouse_genomes_project 4 91327479 91344424 - Plaa protein_coding processed_transcript MGP_AJ_T0066390.1 MGP_AJ_G0028413.1 mouse_genomes_project 4 91331413 91344470 - Plaa protein_coding processed_transcript MGP_AJ_T0068168.1 MGP_AJ_G0028801.1 mouse_genomes_project 4 126736132 126788839 + MGP_AJ_P0068168 Col16a1 protein_coding protein_coding MGP_AJ_T0068169.1 MGP_AJ_G0028801.1 mouse_genomes_project 4 126736167 126738009 + MGP_AJ_P0068169 Col16a1 protein_coding protein_coding MGP_AJ_T0068170.1 MGP_AJ_G0028801.1 mouse_genomes_project 4 126736177 126783184 + Col16a1 protein_coding processed_transcript MGP_AJ_T0068171.1 MGP_AJ_G0028801.1 mouse_genomes_project 4 126736201 126770076 + Col16a1 protein_coding processed_transcript MGP_AJ_T0068172.1 MGP_AJ_G0028801.1 mouse_genomes_project 4 126736237 126740138 + MGP_AJ_P0068172 Col16a1 protein_coding protein_coding MGP_AJ_T0068173.1 MGP_AJ_G0028801.1 mouse_genomes_project 4 126736254 126788845 + MGP_AJ_P0068173 Col16a1 protein_coding nonsense_mediated_decay MGP_AJ_T0068174.1 MGP_AJ_G0028801.1 mouse_genomes_project 4 126743277 126746838 + MGP_AJ_P0068174 Col16a1 protein_coding protein_coding MGP_AJ_T0068175.1 MGP_AJ_G0028801.1 mouse_genomes_project 4 126743322 126744284 + Col16a1 protein_coding retained_intron MGP_AJ_T0068176.1 MGP_AJ_G0028801.1 mouse_genomes_project 4 126744246 126788839 + MGP_AJ_P0068176 Col16a1 protein_coding protein_coding MGP_AJ_T0068177.1 MGP_AJ_G0028801.1 mouse_genomes_project 4 126757329 126771174 + Col16a1 protein_coding processed_transcript MGP_AJ_T0068178.1 MGP_AJ_G0028801.1 mouse_genomes_project 4 126766772 126769883 + Col16a1 protein_coding processed_transcript MGP_AJ_T0068179.1 MGP_AJ_G0028801.1 mouse_genomes_project 4 126768697 126770295 + Col16a1 protein_coding processed_transcript MGP_AJ_T0068180.1 MGP_AJ_G0028801.1 mouse_genomes_project 4 126787165 126788838 + Col16a1 protein_coding processed_transcript MGP_AJ_T0069578.1 MGP_AJ_G0029138.1 mouse_genomes_project 4 149661127 149701796 - MGP_AJ_P0069578 Espn protein_coding protein_coding MGP_AJ_T0069579.1 MGP_AJ_G0029138.1 mouse_genomes_project 4 149661132 149701960 - MGP_AJ_P0069579 Espn protein_coding protein_coding MGP_AJ_T0069580.1 MGP_AJ_G0029138.1 mouse_genomes_project 4 149661653 149669928 - MGP_AJ_P0069580 Espn protein_coding protein_coding MGP_AJ_T0069581.1 MGP_AJ_G0029138.1 mouse_genomes_project 4 149661664 149701811 - MGP_AJ_P0069581 Espn protein_coding protein_coding MGP_AJ_T0069582.1 MGP_AJ_G0029138.1 mouse_genomes_project 4 149661666 149672872 - MGP_AJ_P0069582 Espn protein_coding protein_coding MGP_AJ_T0069583.1 MGP_AJ_G0029138.1 mouse_genomes_project 4 149661678 149673344 - Espn protein_coding processed_transcript MGP_AJ_T0069584.1 MGP_AJ_G0029138.1 mouse_genomes_project 4 149661917 149677385 - MGP_AJ_P0069584 Espn protein_coding protein_coding MGP_AJ_T0069585.1 MGP_AJ_G0029138.1 mouse_genomes_project 4 149661917 149677428 - MGP_AJ_P0069585 Espn protein_coding protein_coding MGP_AJ_T0069586.1 MGP_AJ_G0029138.1 mouse_genomes_project 4 149661917 149677428 - MGP_AJ_P0069586 Espn protein_coding protein_coding MGP_AJ_T0069587.1 MGP_AJ_G0029138.1 mouse_genomes_project 4 149661917 149677428 - MGP_AJ_P0069587 Espn protein_coding protein_coding MGP_AJ_T0069588.1 MGP_AJ_G0029138.1 mouse_genomes_project 4 149661917 149677385 - MGP_AJ_P0069588 Espn protein_coding protein_coding MGP_AJ_T0069589.1 MGP_AJ_G0029138.1 mouse_genomes_project 4 149661917 149677385 - MGP_AJ_P0069589 Espn protein_coding protein_coding MGP_AJ_T0069590.1 MGP_AJ_G0029138.1 mouse_genomes_project 4 149661917 149677428 - MGP_AJ_P0069590 Espn protein_coding protein_coding MGP_AJ_T0069591.1 MGP_AJ_G0029138.1 mouse_genomes_project 4 149661917 149677385 - MGP_AJ_P0069591 Espn protein_coding protein_coding MGP_AJ_T0069592.1 MGP_AJ_G0029138.1 mouse_genomes_project 4 149661928 149672848 - Espn protein_coding processed_transcript MGP_AJ_T0069593.1 MGP_AJ_G0029138.1 mouse_genomes_project 4 149663843 149672873 - Espn protein_coding processed_transcript MGP_AJ_T0069594.1 MGP_AJ_G0029138.1 mouse_genomes_project 4 149664658 149698646 - MGP_AJ_P0069594 Espn protein_coding protein_coding MGP_AJ_T0069595.1 MGP_AJ_G0029138.1 mouse_genomes_project 4 149668796 149672864 - Espn protein_coding processed_transcript MGP_AJ_T0069596.1 MGP_AJ_G0029138.1 mouse_genomes_project 4 149669144 149672237 - Espn protein_coding processed_transcript MGP_AJ_T0099027.1 MGP_AJ_G0037004.1 mouse_genomes_project 4 132048298 132049014 - Gm15979 sense_intronic sense_intronic MGP_AJ_T0064815.1 MGP_AJ_G0028032.1 mouse_genomes_project 4 12508737 12543230 + MGP_AJ_P0064815 Nbn protein_coding protein_coding MGP_AJ_T0064816.1 MGP_AJ_G0028032.1 mouse_genomes_project 4 12508779 12532193 + MGP_AJ_P0064816 Nbn protein_coding protein_coding MGP_AJ_T0065838.1 MGP_AJ_G0028271.1 mouse_genomes_project 4 53389692 53442991 - MGP_AJ_P0065838 Ikbkap protein_coding protein_coding MGP_AJ_T0065839.1 MGP_AJ_G0028271.1 mouse_genomes_project 4 53391024 53397406 - Ikbkap protein_coding retained_intron MGP_AJ_T0065840.1 MGP_AJ_G0028271.1 mouse_genomes_project 4 53391027 53403447 - Ikbkap protein_coding retained_intron MGP_AJ_T0065841.1 MGP_AJ_G0028271.1 mouse_genomes_project 4 53394975 53398512 - Ikbkap protein_coding retained_intron MGP_AJ_T0065842.1 MGP_AJ_G0028271.1 mouse_genomes_project 4 53407988 53412752 - Ikbkap protein_coding retained_intron MGP_AJ_T0065843.1 MGP_AJ_G0028271.1 mouse_genomes_project 4 53416601 53419875 - Ikbkap protein_coding retained_intron MGP_AJ_T0102609.1 MGP_AJ_G0040351.1 mouse_genomes_project 4 115271239 115272193 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0068475.1 MGP_AJ_G0028866.1 mouse_genomes_project 4 130549897 130581213 - MGP_AJ_P0068475 Dhdds protein_coding protein_coding MGP_AJ_T0068476.1 MGP_AJ_G0028866.1 mouse_genomes_project 4 130549926 130581210 - MGP_AJ_P0068476 Dhdds protein_coding protein_coding MGP_AJ_T0068477.1 MGP_AJ_G0028866.1 mouse_genomes_project 4 130549927 130561301 - Dhdds protein_coding processed_transcript MGP_AJ_T0068478.1 MGP_AJ_G0028866.1 mouse_genomes_project 4 130549932 130580716 - Dhdds protein_coding processed_transcript MGP_AJ_T0068479.1 MGP_AJ_G0028866.1 mouse_genomes_project 4 130550044 130581194 - Dhdds protein_coding processed_transcript MGP_AJ_T0068480.1 MGP_AJ_G0028866.1 mouse_genomes_project 4 130551061 130581194 - MGP_AJ_P0068480 Dhdds protein_coding protein_coding MGP_AJ_T0068481.1 MGP_AJ_G0028866.1 mouse_genomes_project 4 130551789 130574697 - MGP_AJ_P0068481 Dhdds protein_coding protein_coding MGP_AJ_T0068482.1 MGP_AJ_G0028866.1 mouse_genomes_project 4 130551817 130580716 - MGP_AJ_P0068482 Dhdds protein_coding protein_coding MGP_AJ_T0068483.1 MGP_AJ_G0028866.1 mouse_genomes_project 4 130551849 130580716 - MGP_AJ_P0068483 Dhdds protein_coding protein_coding MGP_AJ_T0068484.1 MGP_AJ_G0028866.1 mouse_genomes_project 4 130552111 130581241 - MGP_AJ_P0068484 Dhdds protein_coding protein_coding MGP_AJ_T0068485.1 MGP_AJ_G0028866.1 mouse_genomes_project 4 130560883 130577451 - Dhdds protein_coding processed_transcript MGP_AJ_T0014537.1 MGP_AJ_G0012632.1 mouse_genomes_project 4 45651514 45651852 + processed_pseudogene processed_pseudogene MGP_AJ_T0070015.1 MGP_AJ_G0029214.1 mouse_genomes_project 4 153808181 153810031 + MGP_AJ_P0070015 AW011738 protein_coding protein_coding MGP_AJ_T0065476.1 MGP_AJ_G0028177.1 mouse_genomes_project 4 40313308 40330178 + protein_coding processed_transcript MGP_AJ_T0065477.1 MGP_AJ_G0028177.1 mouse_genomes_project 4 40313372 40338285 + MGP_AJ_P0065477 protein_coding protein_coding MGP_AJ_T0065478.1 MGP_AJ_G0028177.1 mouse_genomes_project 4 40313606 40329381 + MGP_AJ_P0065478 protein_coding protein_coding MGP_AJ_T0065479.1 MGP_AJ_G0028177.1 mouse_genomes_project 4 40313667 40325057 + protein_coding processed_transcript MGP_AJ_T0065480.1 MGP_AJ_G0028177.1 mouse_genomes_project 4 40318204 40329970 + protein_coding processed_transcript MGP_AJ_T0065481.1 MGP_AJ_G0028177.1 mouse_genomes_project 4 40333447 40334254 + protein_coding processed_transcript MGP_AJ_T0014583.1 MGP_AJ_G0012678.1 mouse_genomes_project 4 63476567 63477042 - processed_pseudogene processed_pseudogene MGP_AJ_T0014809.1 MGP_AJ_G0012904.1 mouse_genomes_project 4 137846793 137847608 + processed_pseudogene processed_pseudogene MGP_AJ_T0007926.1 MGP_AJ_G0006478.1 mouse_genomes_project 4 104493496 104562666 + 1700047F07Rik lincRNA lincRNA MGP_AJ_T0007927.1 MGP_AJ_G0006478.1 mouse_genomes_project 4 104493528 104512282 + 1700047F07Rik lincRNA lincRNA MGP_AJ_T0007928.1 MGP_AJ_G0006478.1 mouse_genomes_project 4 104510728 104520658 + 1700047F07Rik lincRNA lincRNA MGP_AJ_T0007929.1 MGP_AJ_G0006478.1 mouse_genomes_project 4 104510751 104512339 + 1700047F07Rik lincRNA lincRNA MGP_AJ_T0014707.1 MGP_AJ_G0012802.1 mouse_genomes_project 4 105740839 105741075 - processed_pseudogene processed_pseudogene MGP_AJ_T0065599.1 MGP_AJ_G0028202.1 mouse_genomes_project 4 42011812 42050055 + MGP_AJ_P0065599 Dcaf10 protein_coding protein_coding MGP_AJ_T0065600.1 MGP_AJ_G0028202.1 mouse_genomes_project 4 42011831 42040465 + Dcaf10 protein_coding processed_transcript MGP_AJ_T0065601.1 MGP_AJ_G0028202.1 mouse_genomes_project 4 42011893 42045241 + Dcaf10 protein_coding processed_transcript MGP_AJ_T0065602.1 MGP_AJ_G0028202.1 mouse_genomes_project 4 42040331 42045952 + MGP_AJ_P0065602 Dcaf10 protein_coding protein_coding MGP_AJ_T0064993.1 MGP_AJ_G0028079.1 mouse_genomes_project 4 29618623 29643567 + MGP_AJ_P0064993 Srsf12 protein_coding protein_coding MGP_AJ_T0064994.1 MGP_AJ_G0028079.1 mouse_genomes_project 4 29618881 29643577 + MGP_AJ_P0064994 Srsf12 protein_coding protein_coding MGP_AJ_T0101220.1 MGP_AJ_G0039186.1 mouse_genomes_project 4 59699995 59700129 + Gm25391 snoRNA snoRNA MGP_AJ_T0065663.1 MGP_AJ_G0028218.1 mouse_genomes_project 4 43164386 43178774 + MGP_AJ_P0065663 Nans protein_coding protein_coding MGP_AJ_T0065664.1 MGP_AJ_G0028218.1 mouse_genomes_project 4 43164457 43170275 + Nans protein_coding processed_transcript MGP_AJ_T0065665.1 MGP_AJ_G0028218.1 mouse_genomes_project 4 43164512 43174221 + Nans protein_coding processed_transcript MGP_AJ_T0065666.1 MGP_AJ_G0028218.1 mouse_genomes_project 4 43165123 43175884 + Nans protein_coding processed_transcript MGP_AJ_T0014716.1 MGP_AJ_G0012811.1 mouse_genomes_project 4 108561476 108562466 - processed_pseudogene processed_pseudogene MGP_AJ_T0067108.1 MGP_AJ_G0028560.1 mouse_genomes_project 4 111819586 111829139 + MGP_AJ_P0067108 Cyp4a30b protein_coding protein_coding MGP_AJ_T0065673.1 MGP_AJ_G0028220.1 mouse_genomes_project 4 43205432 43234814 - MGP_AJ_P0065673 Coro2a protein_coding protein_coding MGP_AJ_T0065674.1 MGP_AJ_G0028220.1 mouse_genomes_project 4 43205438 43234832 - MGP_AJ_P0065674 Coro2a protein_coding protein_coding MGP_AJ_T0065675.1 MGP_AJ_G0028220.1 mouse_genomes_project 4 43205438 43260417 - MGP_AJ_P0065675 Coro2a protein_coding protein_coding MGP_AJ_T0065676.1 MGP_AJ_G0028220.1 mouse_genomes_project 4 43209032 43211234 - Coro2a protein_coding processed_transcript MGP_AJ_T0065677.1 MGP_AJ_G0028220.1 mouse_genomes_project 4 43209799 43211370 - Coro2a protein_coding retained_intron MGP_AJ_T0065678.1 MGP_AJ_G0028220.1 mouse_genomes_project 4 43211568 43260106 - Coro2a protein_coding retained_intron MGP_AJ_T0069312.1 MGP_AJ_G0029091.1 mouse_genomes_project 4 145992235 146016034 + MGP_AJ_P0069312 Exosc10 protein_coding protein_coding MGP_AJ_T0069313.1 MGP_AJ_G0029091.1 mouse_genomes_project 4 145992237 146016023 + Exosc10 protein_coding processed_transcript MGP_AJ_T0069314.1 MGP_AJ_G0029091.1 mouse_genomes_project 4 145992261 146016026 + MGP_AJ_P0069314 Exosc10 protein_coding nonsense_mediated_decay MGP_AJ_T0069315.1 MGP_AJ_G0029091.1 mouse_genomes_project 4 145992268 146016034 + MGP_AJ_P0069315 Exosc10 protein_coding protein_coding MGP_AJ_T0069316.1 MGP_AJ_G0029091.1 mouse_genomes_project 4 145996562 145997654 + MGP_AJ_P0069316 Exosc10 protein_coding nonsense_mediated_decay MGP_AJ_T0069317.1 MGP_AJ_G0029091.1 mouse_genomes_project 4 145999838 146010200 + Exosc10 protein_coding retained_intron MGP_AJ_T0069318.1 MGP_AJ_G0029091.1 mouse_genomes_project 4 146002010 146010090 + Exosc10 protein_coding retained_intron MGP_AJ_T0069319.1 MGP_AJ_G0029091.1 mouse_genomes_project 4 146009753 146015954 + Exosc10 protein_coding processed_transcript MGP_AJ_T0014661.1 MGP_AJ_G0012756.1 mouse_genomes_project 4 91766384 91767045 - processed_pseudogene processed_pseudogene MGP_AJ_T0065871.1 MGP_AJ_G0028277.1 mouse_genomes_project 4 53841256 53953533 - MGP_AJ_P0065871 Ptpn3 protein_coding protein_coding MGP_AJ_T0065872.1 MGP_AJ_G0028277.1 mouse_genomes_project 4 53868881 53872590 - Ptpn3 protein_coding processed_transcript MGP_AJ_T0065873.1 MGP_AJ_G0028277.1 mouse_genomes_project 4 53895813 53952071 - MGP_AJ_P0065873 Ptpn3 protein_coding protein_coding MGP_AJ_T0065874.1 MGP_AJ_G0028277.1 mouse_genomes_project 4 53905688 53952611 - Ptpn3 protein_coding processed_transcript MGP_AJ_T0065875.1 MGP_AJ_G0028277.1 mouse_genomes_project 4 53915892 53953203 - MGP_AJ_P0065875 Ptpn3 protein_coding protein_coding MGP_AJ_T0065876.1 MGP_AJ_G0028277.1 mouse_genomes_project 4 53920929 53952452 - MGP_AJ_P0065876 Ptpn3 protein_coding protein_coding MGP_AJ_T0014800.1 MGP_AJ_G0012895.1 mouse_genomes_project 4 132936755 132937278 - processed_pseudogene processed_pseudogene MGP_AJ_T0014454.1 MGP_AJ_G0012549.1 mouse_genomes_project 4 20150941 20151358 - processed_pseudogene processed_pseudogene MGP_AJ_T0000001.1 MGP_AJ_G0000001.1 mouse_genomes_project 4 114252587 114285858 - Gm17114 3prime_overlapping_ncRNA 3prime_overlapping_ncRNA MGP_AJ_T0066873.1 MGP_AJ_G0028512.1 mouse_genomes_project 4 104972041 104985933 + MGP_AJ_P0066873 Echdc2 protein_coding protein_coding MGP_AJ_T0066874.1 MGP_AJ_G0028512.1 mouse_genomes_project 4 104972070 104985932 + MGP_AJ_P0066874 Echdc2 protein_coding protein_coding MGP_AJ_T0066875.1 MGP_AJ_G0028512.1 mouse_genomes_project 4 104972070 104985696 + MGP_AJ_P0066875 Echdc2 protein_coding nonsense_mediated_decay MGP_AJ_T0066876.1 MGP_AJ_G0028512.1 mouse_genomes_project 4 104972092 104985931 + MGP_AJ_P0066876 Echdc2 protein_coding nonsense_mediated_decay MGP_AJ_T0066877.1 MGP_AJ_G0028512.1 mouse_genomes_project 4 104972122 104985693 + MGP_AJ_P0066877 Echdc2 protein_coding protein_coding MGP_AJ_T0066878.1 MGP_AJ_G0028512.1 mouse_genomes_project 4 104976334 104985557 + MGP_AJ_P0066878 Echdc2 protein_coding protein_coding MGP_AJ_T0066879.1 MGP_AJ_G0028512.1 mouse_genomes_project 4 104976406 104982029 + Echdc2 protein_coding retained_intron MGP_AJ_T0066880.1 MGP_AJ_G0028512.1 mouse_genomes_project 4 104976762 104985932 + Echdc2 protein_coding processed_transcript MGP_AJ_T0066881.1 MGP_AJ_G0028512.1 mouse_genomes_project 4 104976773 104980473 + Echdc2 protein_coding processed_transcript MGP_AJ_T0066882.1 MGP_AJ_G0028512.1 mouse_genomes_project 4 104978781 104985784 + MGP_AJ_P0066882 Echdc2 protein_coding nonsense_mediated_decay MGP_AJ_T0066883.1 MGP_AJ_G0028512.1 mouse_genomes_project 4 104979284 104983724 + Echdc2 protein_coding retained_intron MGP_AJ_T0066884.1 MGP_AJ_G0028512.1 mouse_genomes_project 4 104980311 104985684 + Echdc2 protein_coding retained_intron MGP_AJ_T0066885.1 MGP_AJ_G0028512.1 mouse_genomes_project 4 104980431 104985713 + MGP_AJ_P0066885 Echdc2 protein_coding protein_coding MGP_AJ_T0101250.1 MGP_AJ_G0039216.1 mouse_genomes_project 4 119867338 119867469 + Gm25788 snoRNA snoRNA MGP_AJ_T0010598.1 MGP_AJ_G0008720.1 mouse_genomes_project 4 85716814 85716920 - Mir31 miRNA miRNA MGP_AJ_T0068467.1 MGP_AJ_G0028865.1 mouse_genomes_project 4 130546364 130549520 - MGP_AJ_P0068467 protein_coding protein_coding MGP_AJ_T0068468.1 MGP_AJ_G0028865.1 mouse_genomes_project 4 130546396 130548766 - protein_coding retained_intron MGP_AJ_T0068469.1 MGP_AJ_G0028865.1 mouse_genomes_project 4 130546396 130548136 - protein_coding processed_transcript MGP_AJ_T0068470.1 MGP_AJ_G0028865.1 mouse_genomes_project 4 130546396 130548112 - protein_coding processed_transcript MGP_AJ_T0068471.1 MGP_AJ_G0028865.1 mouse_genomes_project 4 130546396 130549520 - protein_coding processed_transcript MGP_AJ_T0068472.1 MGP_AJ_G0028865.1 mouse_genomes_project 4 130546396 130548751 - MGP_AJ_P0068472 protein_coding protein_coding MGP_AJ_T0068473.1 MGP_AJ_G0028865.1 mouse_genomes_project 4 130546450 130548748 - protein_coding retained_intron MGP_AJ_T0068474.1 MGP_AJ_G0028865.1 mouse_genomes_project 4 130546460 130548718 - protein_coding retained_intron MGP_AJ_T0066674.1 MGP_AJ_G0028474.1 mouse_genomes_project 4 101622020 101658749 - C8a protein_coding processed_transcript MGP_AJ_T0066675.1 MGP_AJ_G0028474.1 mouse_genomes_project 4 101622020 101678681 - MGP_AJ_P0066675 C8a protein_coding protein_coding MGP_AJ_T0066676.1 MGP_AJ_G0028474.1 mouse_genomes_project 4 101622022 101678639 - MGP_AJ_P0066676 C8a protein_coding protein_coding MGP_AJ_T0067560.1 MGP_AJ_G0028658.1 mouse_genomes_project 4 115876128 115881148 - Ppcs protein_coding retained_intron MGP_AJ_T0067561.1 MGP_AJ_G0028658.1 mouse_genomes_project 4 115876128 115881210 - MGP_AJ_P0067561 Ppcs protein_coding protein_coding MGP_AJ_T0067562.1 MGP_AJ_G0028658.1 mouse_genomes_project 4 115876128 115881166 - MGP_AJ_P0067562 Ppcs protein_coding protein_coding MGP_AJ_T0010650.1 MGP_AJ_G0008772.1 mouse_genomes_project 4 150593899 150593994 - Gm25779 miRNA miRNA MGP_AJ_T0102604.1 MGP_AJ_G0040346.1 mouse_genomes_project 4 111531186 111532232 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0014765.1 MGP_AJ_G0012860.1 mouse_genomes_project 4 122114269 122114820 + processed_pseudogene processed_pseudogene MGP_AJ_T0102601.1 MGP_AJ_G0040343.1 mouse_genomes_project 4 108966522 108967590 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0064995.1 MGP_AJ_G0028080.1 mouse_genomes_project 4 29655646 29658734 - MGP_AJ_P0064995 Pnrc1 protein_coding protein_coding MGP_AJ_T0064996.1 MGP_AJ_G0028080.1 mouse_genomes_project 4 29656227 29657799 - Pnrc1 protein_coding processed_transcript MGP_AJ_T0064997.1 MGP_AJ_G0028080.1 mouse_genomes_project 4 29656235 29701191 - Pnrc1 protein_coding processed_transcript MGP_AJ_T0014504.1 MGP_AJ_G0012599.1 mouse_genomes_project 4 32852354 32853160 + processed_pseudogene processed_pseudogene MGP_AJ_T0014654.1 MGP_AJ_G0012749.1 mouse_genomes_project 4 89770610 89771100 - processed_pseudogene processed_pseudogene MGP_AJ_T0068408.1 MGP_AJ_G0028849.1 mouse_genomes_project 4 129822758 129832803 - MGP_AJ_P0068408 Sytl1 protein_coding protein_coding MGP_AJ_T0068409.1 MGP_AJ_G0028849.1 mouse_genomes_project 4 129822758 129832777 - MGP_AJ_P0068409 Sytl1 protein_coding protein_coding MGP_AJ_T0068410.1 MGP_AJ_G0028849.1 mouse_genomes_project 4 129822766 129832777 - Sytl1 protein_coding processed_transcript MGP_AJ_T0068411.1 MGP_AJ_G0028849.1 mouse_genomes_project 4 129822829 129832742 - Sytl1 protein_coding processed_transcript MGP_AJ_T0007922.1 MGP_AJ_G0006475.1 mouse_genomes_project 4 103093815 103094802 + Gm12730 lincRNA lincRNA MGP_AJ_T0065957.1 MGP_AJ_G0028299.1 mouse_genomes_project 4 56287460 56423454 + MGP_AJ_P0065957 E130308A19Rik protein_coding protein_coding MGP_AJ_T0065958.1 MGP_AJ_G0028299.1 mouse_genomes_project 4 56287492 56383373 + MGP_AJ_P0065958 E130308A19Rik protein_coding protein_coding MGP_AJ_T0065959.1 MGP_AJ_G0028299.1 mouse_genomes_project 4 56352125 56382215 + E130308A19Rik protein_coding processed_transcript MGP_AJ_T0007865.1 MGP_AJ_G0006427.1 mouse_genomes_project 4 54014212 54017637 - 1700042G15Rik lincRNA lincRNA MGP_AJ_T0007866.1 MGP_AJ_G0006427.1 mouse_genomes_project 4 54014536 54017656 - 1700042G15Rik lincRNA lincRNA MGP_AJ_T0007867.1 MGP_AJ_G0006427.1 mouse_genomes_project 4 54014638 54017616 - 1700042G15Rik lincRNA lincRNA MGP_AJ_T0067852.1 MGP_AJ_G0028735.1 mouse_genomes_project 4 122898552 122912613 + MGP_AJ_P0067852 Trappc3 protein_coding protein_coding MGP_AJ_T0067853.1 MGP_AJ_G0028735.1 mouse_genomes_project 4 122898627 122909729 + Trappc3 protein_coding processed_transcript MGP_AJ_T0069695.1 MGP_AJ_G0029155.1 mouse_genomes_project 4 151629385 151645032 - MGP_AJ_P0069695 Ccdc27 protein_coding protein_coding MGP_AJ_T0007828.1 MGP_AJ_G0006395.1 mouse_genomes_project 4 26863348 26953920 + Gm11924 lincRNA lincRNA MGP_AJ_T0014674.1 MGP_AJ_G0012769.1 mouse_genomes_project 4 96204836 96205835 - processed_pseudogene processed_pseudogene MGP_AJ_T0014738.1 MGP_AJ_G0012833.1 mouse_genomes_project 4 115433767 115434772 + processed_pseudogene processed_pseudogene MGP_AJ_T0066040.1 MGP_AJ_G0028323.1 mouse_genomes_project 4 59921568 59927996 - Kif12 protein_coding processed_transcript MGP_AJ_T0066041.1 MGP_AJ_G0028323.1 mouse_genomes_project 4 59921571 59928081 - MGP_AJ_P0066041 Kif12 protein_coding protein_coding MGP_AJ_T0066042.1 MGP_AJ_G0028323.1 mouse_genomes_project 4 59923411 59926732 - Kif12 protein_coding processed_transcript MGP_AJ_T0066043.1 MGP_AJ_G0028323.1 mouse_genomes_project 4 59923663 59927124 - Kif12 protein_coding processed_transcript MGP_AJ_T0066044.1 MGP_AJ_G0028323.1 mouse_genomes_project 4 59925341 59927680 - Kif12 protein_coding processed_transcript MGP_AJ_T0065296.1 MGP_AJ_G0028153.1 mouse_genomes_project 4 39642107 39650174 - Fancg protein_coding retained_intron MGP_AJ_T0065297.1 MGP_AJ_G0028153.1 mouse_genomes_project 4 39642107 39650041 - MGP_AJ_P0065297 Fancg protein_coding protein_coding MGP_AJ_T0065298.1 MGP_AJ_G0028153.1 mouse_genomes_project 4 39642686 39643697 - Fancg protein_coding retained_intron MGP_AJ_T0065299.1 MGP_AJ_G0028153.1 mouse_genomes_project 4 39642775 39646211 - Fancg protein_coding processed_transcript MGP_AJ_T0065300.1 MGP_AJ_G0028153.1 mouse_genomes_project 4 39643024 39646256 - Fancg protein_coding processed_transcript MGP_AJ_T0065301.1 MGP_AJ_G0028153.1 mouse_genomes_project 4 39643677 39646524 - Fancg protein_coding processed_transcript MGP_AJ_T0065302.1 MGP_AJ_G0028153.1 mouse_genomes_project 4 39644973 39648843 - Fancg protein_coding processed_transcript MGP_AJ_T0065303.1 MGP_AJ_G0028153.1 mouse_genomes_project 4 39648756 39649856 - Fancg protein_coding retained_intron MGP_AJ_T0065304.1 MGP_AJ_G0028153.1 mouse_genomes_project 4 39648847 39649908 - Fancg protein_coding retained_intron MGP_AJ_T0065305.1 MGP_AJ_G0028153.1 mouse_genomes_project 4 39649728 39650192 - Fancg protein_coding processed_transcript MGP_AJ_T0099023.1 MGP_AJ_G0037000.1 mouse_genomes_project 4 91881516 91887277 + Gm28096 sense_intronic sense_intronic MGP_AJ_T0007986.1 MGP_AJ_G0006518.1 mouse_genomes_project 4 128236886 128252941 - Gm16080 lincRNA lincRNA MGP_AJ_T0004448.1 MGP_AJ_G0003873.1 mouse_genomes_project 4 41324129 41345044 + Gm12462 antisense antisense MGP_AJ_T0007873.1 MGP_AJ_G0006433.1 mouse_genomes_project 4 60373548 60382063 - lincRNA lincRNA MGP_AJ_T0068445.1 MGP_AJ_G0028861.1 mouse_genomes_project 4 130187641 130215446 - MGP_AJ_P0068445 Zdhhc18 protein_coding protein_coding MGP_AJ_T0068446.1 MGP_AJ_G0028861.1 mouse_genomes_project 4 130191007 130197916 - Zdhhc18 protein_coding retained_intron MGP_AJ_T0068447.1 MGP_AJ_G0028861.1 mouse_genomes_project 4 130191077 130195382 - Zdhhc18 protein_coding processed_transcript MGP_AJ_T0068448.1 MGP_AJ_G0028861.1 mouse_genomes_project 4 130195663 130197691 - Zdhhc18 protein_coding retained_intron MGP_AJ_T0068449.1 MGP_AJ_G0028861.1 mouse_genomes_project 4 130209461 130231485 - Zdhhc18 protein_coding processed_transcript MGP_AJ_T0099895.1 MGP_AJ_G0037861.1 mouse_genomes_project 4 7814747 7814902 - Gm22940 snRNA snRNA MGP_AJ_T0069191.1 MGP_AJ_G0029049.1 mouse_genomes_project 4 141193026 141198000 + MGP_AJ_P0069191 protein_coding protein_coding MGP_AJ_T0068687.1 MGP_AJ_G0028913.1 mouse_genomes_project 4 132564241 132580295 + MGP_AJ_P0068687 Hmgcl protein_coding protein_coding MGP_AJ_T0068688.1 MGP_AJ_G0028913.1 mouse_genomes_project 4 132564258 132578586 + Hmgcl protein_coding processed_transcript MGP_AJ_T0068689.1 MGP_AJ_G0028913.1 mouse_genomes_project 4 132566360 132576427 + Hmgcl protein_coding processed_transcript MGP_AJ_T0068690.1 MGP_AJ_G0028913.1 mouse_genomes_project 4 132577404 132580295 + Hmgcl protein_coding processed_transcript MGP_AJ_T0068691.1 MGP_AJ_G0028913.1 mouse_genomes_project 4 132578009 132579894 + Hmgcl protein_coding processed_transcript MGP_AJ_T0102621.1 MGP_AJ_G0040363.1 mouse_genomes_project 4 140338506 140341032 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0014470.1 MGP_AJ_G0012565.1 mouse_genomes_project 4 24475223 24475546 - processed_pseudogene processed_pseudogene MGP_AJ_T0065619.1 MGP_AJ_G0028207.1 mouse_genomes_project 4 42522494 42560588 + MGP_AJ_P0065619 Stra6l protein_coding protein_coding MGP_AJ_T0065620.1 MGP_AJ_G0028207.1 mouse_genomes_project 4 42522646 42560588 + MGP_AJ_P0065620 Stra6l protein_coding protein_coding MGP_AJ_T0065621.1 MGP_AJ_G0028207.1 mouse_genomes_project 4 42522777 42560588 + MGP_AJ_P0065621 Stra6l protein_coding protein_coding MGP_AJ_T0065622.1 MGP_AJ_G0028207.1 mouse_genomes_project 4 42522827 42534006 + Stra6l protein_coding processed_transcript MGP_AJ_T0065623.1 MGP_AJ_G0028207.1 mouse_genomes_project 4 42547786 42560198 + Stra6l protein_coding retained_intron MGP_AJ_T0064984.1 MGP_AJ_G0028075.1 mouse_genomes_project 4 29432797 29446984 + MGP_AJ_P0064984 Ube2j1 protein_coding protein_coding MGP_AJ_T0064985.1 MGP_AJ_G0028075.1 mouse_genomes_project 4 29432855 29454131 + MGP_AJ_P0064985 Ube2j1 protein_coding protein_coding MGP_AJ_T0065773.1 MGP_AJ_G0028247.1 mouse_genomes_project 4 46370406 46548883 - MGP_AJ_P0065773 Grin3a protein_coding protein_coding MGP_AJ_T0065774.1 MGP_AJ_G0028247.1 mouse_genomes_project 4 46370406 46548883 - MGP_AJ_P0065774 Grin3a protein_coding protein_coding MGP_AJ_T0065776.1 MGP_AJ_G0028247.1 mouse_genomes_project 4 46412895 46427877 - Grin3a protein_coding processed_transcript MGP_AJ_T0065777.1 MGP_AJ_G0028247.1 mouse_genomes_project 4 46472422 46549078 - Grin3a protein_coding processed_transcript MGP_AJ_T0018082.1 MGP_AJ_G0015547.1 mouse_genomes_project 4 113620577 113621026 - 1700012C08Rik processed_transcript processed_transcript MGP_AJ_T0067906.1 MGP_AJ_G0028748.1 mouse_genomes_project 4 123512215 123627228 - MGP_AJ_P0067906 Zmym4 protein_coding protein_coding MGP_AJ_T0067907.1 MGP_AJ_G0028748.1 mouse_genomes_project 4 123518942 123520753 - Zmym4 protein_coding processed_transcript MGP_AJ_T0067908.1 MGP_AJ_G0028748.1 mouse_genomes_project 4 123555608 123571709 - Zmym4 protein_coding processed_transcript MGP_AJ_T0067909.1 MGP_AJ_G0028748.1 mouse_genomes_project 4 123560809 123571597 - Zmym4 protein_coding processed_transcript MGP_AJ_T0067910.1 MGP_AJ_G0028748.1 mouse_genomes_project 4 123571426 123579674 - Zmym4 protein_coding processed_transcript MGP_AJ_T0067911.1 MGP_AJ_G0028748.1 mouse_genomes_project 4 123579312 123582039 - Zmym4 protein_coding processed_transcript MGP_AJ_T0067912.1 MGP_AJ_G0028748.1 mouse_genomes_project 4 123582037 123627273 - Zmym4 protein_coding processed_transcript MGP_AJ_T0067913.1 MGP_AJ_G0028748.1 mouse_genomes_project 4 123582070 123627297 - Zmym4 protein_coding processed_transcript MGP_AJ_T0098676.1 MGP_AJ_G0036660.1 mouse_genomes_project 4 40336394 40336526 + Gm23257 rRNA rRNA MGP_AJ_T0068699.1 MGP_AJ_G0028915.1 mouse_genomes_project 4 132585902 132590305 - MGP_AJ_P0068699 Lypla2 protein_coding protein_coding MGP_AJ_T0068700.1 MGP_AJ_G0028915.1 mouse_genomes_project 4 132585902 132589608 - MGP_AJ_P0068700 Lypla2 protein_coding protein_coding MGP_AJ_T0068701.1 MGP_AJ_G0028915.1 mouse_genomes_project 4 132586379 132588149 - Lypla2 protein_coding retained_intron MGP_AJ_T0068702.1 MGP_AJ_G0028915.1 mouse_genomes_project 4 132586442 132590267 - Lypla2 protein_coding retained_intron MGP_AJ_T0068703.1 MGP_AJ_G0028915.1 mouse_genomes_project 4 132588328 132590282 - Lypla2 protein_coding retained_intron MGP_AJ_T0004470.1 MGP_AJ_G0003893.1 mouse_genomes_project 4 80081599 80097927 - Gm11413 antisense antisense MGP_AJ_T0004505.1 MGP_AJ_G0003914.1 mouse_genomes_project 4 106210793 106211207 - Ttc39aos1 antisense antisense MGP_AJ_T0004506.1 MGP_AJ_G0003914.1 mouse_genomes_project 4 106210806 106213158 - Ttc39aos1 antisense antisense MGP_AJ_T0066080.1 MGP_AJ_G0028332.1 mouse_genomes_project 4 60383890 60398830 - MGP_AJ_P0066080 1700018C11Rik protein_coding protein_coding MGP_AJ_T0066081.1 MGP_AJ_G0028332.1 mouse_genomes_project 4 60383890 60398842 - MGP_AJ_P0066081 1700018C11Rik protein_coding protein_coding MGP_AJ_T0014724.1 MGP_AJ_G0012819.1 mouse_genomes_project 4 112850936 112851353 + processed_pseudogene processed_pseudogene MGP_AJ_T0014511.1 MGP_AJ_G0012606.1 mouse_genomes_project 4 35734869 35735630 + processed_pseudogene processed_pseudogene MGP_AJ_T0064775.1 MGP_AJ_G0028019.1 mouse_genomes_project 4 8645114 8657841 + MGP_AJ_P0064775 protein_coding protein_coding MGP_AJ_T0064776.1 MGP_AJ_G0028019.1 mouse_genomes_project 4 8645116 8658162 + MGP_AJ_P0064776 protein_coding protein_coding MGP_AJ_T0068548.1 MGP_AJ_G0028879.1 mouse_genomes_project 4 130838805 130841904 + MGP_AJ_P0068548 Gm30191 protein_coding protein_coding MGP_AJ_T0007978.1 MGP_AJ_G0006512.1 mouse_genomes_project 4 127309621 127314048 - Gm26516 lincRNA lincRNA MGP_AJ_T0099976.1 MGP_AJ_G0037942.1 mouse_genomes_project 4 145874458 145874610 - Gm23303 snRNA snRNA MGP_AJ_T0069216.1 MGP_AJ_G0029067.1 mouse_genomes_project 4 142004923 142031489 + Dhrs3 protein_coding processed_transcript MGP_AJ_T0069217.1 MGP_AJ_G0029067.1 mouse_genomes_project 4 142004929 142031415 + MGP_AJ_P0069217 Dhrs3 protein_coding protein_coding MGP_AJ_T0069218.1 MGP_AJ_G0029067.1 mouse_genomes_project 4 142005011 142039363 + MGP_AJ_P0069218 Dhrs3 protein_coding nonsense_mediated_decay MGP_AJ_T0069219.1 MGP_AJ_G0029067.1 mouse_genomes_project 4 142005307 142039373 + MGP_AJ_P0069219 Dhrs3 protein_coding protein_coding MGP_AJ_T0069220.1 MGP_AJ_G0029067.1 mouse_genomes_project 4 142030395 142031489 + Dhrs3 protein_coding retained_intron MGP_AJ_T0099950.1 MGP_AJ_G0037916.1 mouse_genomes_project 4 113603940 113604056 + Gm25099 snRNA snRNA MGP_AJ_T0066663.1 MGP_AJ_G0028472.1 mouse_genomes_project 4 100418503 100978297 + Dab1 protein_coding processed_transcript MGP_AJ_T0066664.1 MGP_AJ_G0028472.1 mouse_genomes_project 4 100418809 101483303 + MGP_AJ_P0066664 Dab1 protein_coding protein_coding MGP_AJ_T0066665.1 MGP_AJ_G0028472.1 mouse_genomes_project 4 101165197 101482417 + MGP_AJ_P0066665 Dab1 protein_coding protein_coding MGP_AJ_T0066666.1 MGP_AJ_G0028472.1 mouse_genomes_project 4 101165673 101549098 + MGP_AJ_P0066666 Dab1 protein_coding protein_coding MGP_AJ_T0066667.1 MGP_AJ_G0028472.1 mouse_genomes_project 4 101165673 101546051 + MGP_AJ_P0066667 Dab1 protein_coding nonsense_mediated_decay MGP_AJ_T0066668.1 MGP_AJ_G0028472.1 mouse_genomes_project 4 101311246 101483303 + MGP_AJ_P0066668 Dab1 protein_coding protein_coding MGP_AJ_T0066669.1 MGP_AJ_G0028472.1 mouse_genomes_project 4 101393154 101481713 + Dab1 protein_coding processed_transcript MGP_AJ_T0066670.1 MGP_AJ_G0028472.1 mouse_genomes_project 4 101407224 101518004 + MGP_AJ_P0066670 Dab1 protein_coding protein_coding MGP_AJ_T0068325.1 MGP_AJ_G0028830.1 mouse_genomes_project 4 129020453 129025649 - MGP_AJ_P0068325 Med18 protein_coding protein_coding MGP_AJ_T0068326.1 MGP_AJ_G0028830.1 mouse_genomes_project 4 129021682 129025059 - MGP_AJ_P0068326 Med18 protein_coding protein_coding MGP_AJ_T0014797.1 MGP_AJ_G0012892.1 mouse_genomes_project 4 132508506 132508720 - processed_pseudogene processed_pseudogene MGP_AJ_T0004575.1 MGP_AJ_G0003970.1 mouse_genomes_project 4 138630602 138633268 + Ctrcos antisense antisense MGP_AJ_T0014675.1 MGP_AJ_G0012770.1 mouse_genomes_project 4 96387455 96388161 - processed_pseudogene processed_pseudogene MGP_AJ_T0065181.1 MGP_AJ_G0028124.1 mouse_genomes_project 4 38084952 38087143 - MGP_AJ_P0065181 Enho protein_coding protein_coding MGP_AJ_T0065585.1 MGP_AJ_G0028199.1 mouse_genomes_project 4 41855050 41934965 + MGP_AJ_P0065585 Frmpd1 protein_coding protein_coding MGP_AJ_T0065586.1 MGP_AJ_G0028199.1 mouse_genomes_project 4 41855081 41958973 + MGP_AJ_P0065586 Frmpd1 protein_coding protein_coding MGP_AJ_T0065587.1 MGP_AJ_G0028199.1 mouse_genomes_project 4 41876554 41958973 + MGP_AJ_P0065587 Frmpd1 protein_coding protein_coding MGP_AJ_T0007797.1 MGP_AJ_G0006370.1 mouse_genomes_project 4 171530 185292 - Gm26857 lincRNA lincRNA MGP_AJ_T0014569.1 MGP_AJ_G0012664.1 mouse_genomes_project 4 54069299 54069785 - processed_pseudogene processed_pseudogene MGP_AJ_T0014519.1 MGP_AJ_G0012614.1 mouse_genomes_project 4 37158204 37158601 - processed_pseudogene processed_pseudogene MGP_AJ_T0068627.1 MGP_AJ_G0028900.1 mouse_genomes_project 4 131934702 131968661 - MGP_AJ_P0068627 Srrm1 protein_coding protein_coding MGP_AJ_T0068628.1 MGP_AJ_G0028900.1 mouse_genomes_project 4 131934709 131968584 - MGP_AJ_P0068628 Srrm1 protein_coding protein_coding MGP_AJ_T0068629.1 MGP_AJ_G0028900.1 mouse_genomes_project 4 131935312 131968584 - MGP_AJ_P0068629 Srrm1 protein_coding protein_coding MGP_AJ_T0068630.1 MGP_AJ_G0028900.1 mouse_genomes_project 4 131936272 131968476 - MGP_AJ_P0068630 Srrm1 protein_coding protein_coding MGP_AJ_T0068631.1 MGP_AJ_G0028900.1 mouse_genomes_project 4 131936528 131941492 - MGP_AJ_P0068631 Srrm1 protein_coding protein_coding MGP_AJ_T0068632.1 MGP_AJ_G0028900.1 mouse_genomes_project 4 131936714 131968474 - Srrm1 protein_coding retained_intron MGP_AJ_T0068633.1 MGP_AJ_G0028900.1 mouse_genomes_project 4 131938027 131939095 - Srrm1 protein_coding retained_intron MGP_AJ_T0068634.1 MGP_AJ_G0028900.1 mouse_genomes_project 4 131943435 131946517 - Srrm1 protein_coding retained_intron MGP_AJ_T0068635.1 MGP_AJ_G0028900.1 mouse_genomes_project 4 131945742 131953425 - Srrm1 protein_coding retained_intron MGP_AJ_T0068636.1 MGP_AJ_G0028900.1 mouse_genomes_project 4 131946441 131957825 - MGP_AJ_P0068636 Srrm1 protein_coding nonsense_mediated_decay MGP_AJ_T0068637.1 MGP_AJ_G0028900.1 mouse_genomes_project 4 131953620 131957881 - Srrm1 protein_coding retained_intron MGP_AJ_T0068638.1 MGP_AJ_G0028900.1 mouse_genomes_project 4 131957773 131968482 - MGP_AJ_P0068638 Srrm1 protein_coding protein_coding MGP_AJ_T0068639.1 MGP_AJ_G0028900.1 mouse_genomes_project 4 131958995 131968491 - Srrm1 protein_coding retained_intron MGP_AJ_T0068640.1 MGP_AJ_G0028900.1 mouse_genomes_project 4 131959885 131962562 - MGP_AJ_P0068640 Srrm1 protein_coding nonsense_mediated_decay MGP_AJ_T0068641.1 MGP_AJ_G0028900.1 mouse_genomes_project 4 131961049 131968542 - Srrm1 protein_coding processed_transcript MGP_AJ_T0069004.1 MGP_AJ_G0028990.1 mouse_genomes_project 4 137561486 137595415 - MGP_AJ_P0069004 Padi1 protein_coding protein_coding MGP_AJ_T0018043.1 MGP_AJ_G0015519.1 mouse_genomes_project 4 37965109 37970234 + Gm12404 processed_transcript processed_transcript MGP_AJ_T0014567.1 MGP_AJ_G0012662.1 mouse_genomes_project 4 52803877 52804193 + processed_pseudogene processed_pseudogene MGP_AJ_T0065603.1 MGP_AJ_G0028203.1 mouse_genomes_project 4 42065989 42081443 - MGP_AJ_P0065603 Slc25a51 protein_coding protein_coding MGP_AJ_T0065604.1 MGP_AJ_G0028203.1 mouse_genomes_project 4 42065989 42081448 - MGP_AJ_P0065604 Slc25a51 protein_coding protein_coding MGP_AJ_T0065605.1 MGP_AJ_G0028203.1 mouse_genomes_project 4 42071409 42081442 - MGP_AJ_P0065605 Slc25a51 protein_coding protein_coding MGP_AJ_T0065606.1 MGP_AJ_G0028203.1 mouse_genomes_project 4 42071740 42081328 - MGP_AJ_P0065606 Slc25a51 protein_coding protein_coding MGP_AJ_T0065607.1 MGP_AJ_G0028203.1 mouse_genomes_project 4 42071770 42077572 - MGP_AJ_P0065607 Slc25a51 protein_coding protein_coding MGP_AJ_T0065608.1 MGP_AJ_G0028203.1 mouse_genomes_project 4 42079814 42081417 - Slc25a51 protein_coding processed_transcript MGP_AJ_T0066074.1 MGP_AJ_G0028330.1 mouse_genomes_project 4 60313096 60319171 + MGP_AJ_P0066074 Atp6v1g1 protein_coding protein_coding MGP_AJ_T0014610.1 MGP_AJ_G0012705.1 mouse_genomes_project 4 72669592 72670488 - processed_pseudogene processed_pseudogene MGP_AJ_T0069221.1 MGP_AJ_G0029068.1 mouse_genomes_project 4 142085210 142310399 - MGP_AJ_P0069221 Vps13d protein_coding protein_coding MGP_AJ_T0069222.1 MGP_AJ_G0029068.1 mouse_genomes_project 4 142085214 142306060 - MGP_AJ_P0069222 Vps13d protein_coding protein_coding MGP_AJ_T0069223.1 MGP_AJ_G0029068.1 mouse_genomes_project 4 142085214 142204748 - MGP_AJ_P0069223 Vps13d protein_coding nonsense_mediated_decay MGP_AJ_T0069224.1 MGP_AJ_G0029068.1 mouse_genomes_project 4 142087184 142270180 - MGP_AJ_P0069224 Vps13d protein_coding protein_coding MGP_AJ_T0069225.1 MGP_AJ_G0029068.1 mouse_genomes_project 4 142087514 142096535 - Vps13d protein_coding processed_transcript MGP_AJ_T0069226.1 MGP_AJ_G0029068.1 mouse_genomes_project 4 142092886 142166963 - Vps13d protein_coding retained_intron MGP_AJ_T0069227.1 MGP_AJ_G0029068.1 mouse_genomes_project 4 142129531 142163854 - Vps13d protein_coding processed_transcript MGP_AJ_T0069228.1 MGP_AJ_G0029068.1 mouse_genomes_project 4 142165801 142171018 - Vps13d protein_coding retained_intron MGP_AJ_T0069229.1 MGP_AJ_G0029068.1 mouse_genomes_project 4 142182784 142185419 - Vps13d protein_coding retained_intron MGP_AJ_T0069230.1 MGP_AJ_G0029068.1 mouse_genomes_project 4 142290748 142310389 - Vps13d protein_coding retained_intron MGP_AJ_T0069214.1 MGP_AJ_G0029065.1 mouse_genomes_project 4 141812506 141835553 - MGP_AJ_P0069214 Gm13178 protein_coding protein_coding MGP_AJ_T0067802.1 MGP_AJ_G0028726.1 mouse_genomes_project 4 122641833 122661800 + MGP_AJ_P0067802 Csf3r protein_coding protein_coding MGP_AJ_T0067803.1 MGP_AJ_G0028726.1 mouse_genomes_project 4 122642009 122649194 + Csf3r protein_coding processed_transcript MGP_AJ_T0067804.1 MGP_AJ_G0028726.1 mouse_genomes_project 4 122644577 122661799 + MGP_AJ_P0067804 Csf3r protein_coding protein_coding MGP_AJ_T0067805.1 MGP_AJ_G0028726.1 mouse_genomes_project 4 122655550 122661354 + Csf3r protein_coding processed_transcript MGP_AJ_T0069005.1 MGP_AJ_G0028991.1 mouse_genomes_project 4 137656980 137711467 + MGP_AJ_P0069005 Padi2 protein_coding protein_coding MGP_AJ_T0069006.1 MGP_AJ_G0028991.1 mouse_genomes_project 4 137675435 137691639 + Padi2 protein_coding processed_transcript MGP_AJ_T0069007.1 MGP_AJ_G0028991.1 mouse_genomes_project 4 137705376 137708616 + Padi2 protein_coding processed_transcript MGP_AJ_T0010571.1 MGP_AJ_G0008693.1 mouse_genomes_project 4 9825330 9825396 - Gm26250 miRNA miRNA MGP_AJ_T0007892.1 MGP_AJ_G0006451.1 mouse_genomes_project 4 85859470 85894149 + Gm12603 lincRNA lincRNA MGP_AJ_T0007893.1 MGP_AJ_G0006451.1 mouse_genomes_project 4 85868100 85894252 + Gm12603 lincRNA lincRNA MGP_AJ_T0004608.1 MGP_AJ_G0003995.1 mouse_genomes_project 4 151696854 151701727 + Trp73os antisense antisense MGP_AJ_T0004560.1 MGP_AJ_G0003959.1 mouse_genomes_project 4 134589907 134591498 - Gm13012 antisense antisense MGP_AJ_T0004561.1 MGP_AJ_G0003959.1 mouse_genomes_project 4 134589907 134590973 - Gm13012 antisense antisense MGP_AJ_T0004562.1 MGP_AJ_G0003959.1 mouse_genomes_project 4 134589907 134591487 - Gm13012 antisense antisense MGP_AJ_T0065402.1 MGP_AJ_G0028165.1 mouse_genomes_project 4 40138036 40139129 - MGP_AJ_P0065402 Arhgef39 protein_coding protein_coding MGP_AJ_T0065403.1 MGP_AJ_G0028165.1 mouse_genomes_project 4 40138036 40141590 - MGP_AJ_P0065403 Arhgef39 protein_coding protein_coding MGP_AJ_T0065404.1 MGP_AJ_G0028165.1 mouse_genomes_project 4 40138040 40141514 - Arhgef39 protein_coding processed_transcript MGP_AJ_T0065405.1 MGP_AJ_G0028165.1 mouse_genomes_project 4 40138042 40139108 - Arhgef39 protein_coding processed_transcript MGP_AJ_T0065406.1 MGP_AJ_G0028165.1 mouse_genomes_project 4 40138418 40141556 - Arhgef39 protein_coding processed_transcript MGP_AJ_T0065407.1 MGP_AJ_G0028165.1 mouse_genomes_project 4 40138715 40141503 - MGP_AJ_P0065407 Arhgef39 protein_coding protein_coding MGP_AJ_T0065408.1 MGP_AJ_G0028165.1 mouse_genomes_project 4 40139114 40141010 - Arhgef39 protein_coding processed_transcript MGP_AJ_T0065409.1 MGP_AJ_G0028165.1 mouse_genomes_project 4 40139155 40140970 - Arhgef39 protein_coding processed_transcript MGP_AJ_T0065410.1 MGP_AJ_G0028165.1 mouse_genomes_project 4 40139626 40141506 - Arhgef39 protein_coding processed_transcript MGP_AJ_T0065411.1 MGP_AJ_G0028165.1 mouse_genomes_project 4 40141041 40141556 - Arhgef39 protein_coding processed_transcript MGP_AJ_T0101265.1 MGP_AJ_G0039231.1 mouse_genomes_project 4 128909272 128909477 - Snora73a snoRNA snoRNA MGP_AJ_T0011586.1 MGP_AJ_G0009708.1 mouse_genomes_project 4 140176693 140177001 + Gm26313 misc_RNA misc_RNA MGP_AJ_T0014784.1 MGP_AJ_G0012879.1 mouse_genomes_project 4 129371102 129371387 - processed_pseudogene processed_pseudogene MGP_AJ_T0007871.1 MGP_AJ_G0006431.1 mouse_genomes_project 4 59468585 59481729 + Gm11210 lincRNA lincRNA MGP_AJ_T0066938.1 MGP_AJ_G0028528.1 mouse_genomes_project 4 105687736 105750612 + MGP_AJ_P0066938 Rab3b protein_coding protein_coding MGP_AJ_T0066939.1 MGP_AJ_G0028528.1 mouse_genomes_project 4 105687873 105748477 + MGP_AJ_P0066939 Rab3b protein_coding protein_coding MGP_AJ_T0066940.1 MGP_AJ_G0028528.1 mouse_genomes_project 4 105697638 105748480 + MGP_AJ_P0066940 Rab3b protein_coding protein_coding MGP_AJ_T0066941.1 MGP_AJ_G0028528.1 mouse_genomes_project 4 105746420 105748197 + Rab3b protein_coding processed_transcript MGP_AJ_T0010601.1 MGP_AJ_G0008723.1 mouse_genomes_project 4 95289504 95289658 - Gm22625 miRNA miRNA MGP_AJ_T0069187.1 MGP_AJ_G0029046.1 mouse_genomes_project 4 140822040 140825225 - MGP_AJ_P0069187 protein_coding protein_coding MGP_AJ_T0099921.1 MGP_AJ_G0037887.1 mouse_genomes_project 4 59016609 59016716 + Gm23148 snRNA snRNA MGP_AJ_T0066562.1 MGP_AJ_G0028454.1 mouse_genomes_project 4 97897712 98012122 - MGP_AJ_P0066562 Jak1 protein_coding protein_coding MGP_AJ_T0066563.1 MGP_AJ_G0028454.1 mouse_genomes_project 4 97899594 97900465 - Jak1 protein_coding processed_transcript MGP_AJ_T0066564.1 MGP_AJ_G0028454.1 mouse_genomes_project 4 97925696 97931531 - Jak1 protein_coding processed_transcript MGP_AJ_T0066565.1 MGP_AJ_G0028454.1 mouse_genomes_project 4 97927124 97931556 - Jak1 protein_coding processed_transcript MGP_AJ_T0066566.1 MGP_AJ_G0028454.1 mouse_genomes_project 4 97927977 98012121 - Jak1 protein_coding processed_transcript MGP_AJ_T0066567.1 MGP_AJ_G0028454.1 mouse_genomes_project 4 97928017 98012063 - Jak1 protein_coding processed_transcript MGP_AJ_T0066568.1 MGP_AJ_G0028454.1 mouse_genomes_project 4 97937731 98012113 - MGP_AJ_P0066568 Jak1 protein_coding protein_coding MGP_AJ_T0066569.1 MGP_AJ_G0028454.1 mouse_genomes_project 4 97943943 98012066 - Jak1 protein_coding processed_transcript MGP_AJ_T0068995.1 MGP_AJ_G0028987.1 mouse_genomes_project 4 137474937 137490117 - MGP_AJ_P0068995 Padi6 protein_coding protein_coding MGP_AJ_T0068996.1 MGP_AJ_G0028987.1 mouse_genomes_project 4 137479812 137480527 - Padi6 protein_coding processed_transcript MGP_AJ_T0068997.1 MGP_AJ_G0028987.1 mouse_genomes_project 4 137483249 137489121 - MGP_AJ_P0068997 Padi6 protein_coding protein_coding MGP_AJ_T0101241.1 MGP_AJ_G0039207.1 mouse_genomes_project 4 106344569 106344700 + Gm22497 snoRNA snoRNA MGP_AJ_T0067596.1 MGP_AJ_G0028668.1 mouse_genomes_project 4 116868238 116918496 + Scmh1 protein_coding processed_transcript MGP_AJ_T0067597.1 MGP_AJ_G0028668.1 mouse_genomes_project 4 116868263 116995505 + MGP_AJ_P0067597 Scmh1 protein_coding protein_coding MGP_AJ_T0067598.1 MGP_AJ_G0028668.1 mouse_genomes_project 4 116868322 116927101 + Scmh1 protein_coding processed_transcript MGP_AJ_T0067599.1 MGP_AJ_G0028668.1 mouse_genomes_project 4 116868337 116911692 + Scmh1 protein_coding processed_transcript MGP_AJ_T0067600.1 MGP_AJ_G0028668.1 mouse_genomes_project 4 116868384 116927066 + MGP_AJ_P0067600 Scmh1 protein_coding protein_coding MGP_AJ_T0067601.1 MGP_AJ_G0028668.1 mouse_genomes_project 4 116910106 116995505 + MGP_AJ_P0067601 Scmh1 protein_coding protein_coding MGP_AJ_T0067602.1 MGP_AJ_G0028668.1 mouse_genomes_project 4 116917223 116995483 + MGP_AJ_P0067602 Scmh1 protein_coding protein_coding MGP_AJ_T0067603.1 MGP_AJ_G0028668.1 mouse_genomes_project 4 116926061 116994580 + MGP_AJ_P0067603 Scmh1 protein_coding protein_coding MGP_AJ_T0067604.1 MGP_AJ_G0028668.1 mouse_genomes_project 4 116967838 116995505 + Scmh1 protein_coding processed_transcript MGP_AJ_T0067605.1 MGP_AJ_G0028668.1 mouse_genomes_project 4 116969364 116987397 + MGP_AJ_P0067605 Scmh1 protein_coding protein_coding MGP_AJ_T0067606.1 MGP_AJ_G0028668.1 mouse_genomes_project 4 116982450 116995505 + Scmh1 protein_coding processed_transcript MGP_AJ_T0067607.1 MGP_AJ_G0028668.1 mouse_genomes_project 4 116982503 116995122 + Scmh1 protein_coding processed_transcript MGP_AJ_T0067608.1 MGP_AJ_G0028668.1 mouse_genomes_project 4 116993149 116994541 + Scmh1 protein_coding processed_transcript MGP_AJ_T0067609.1 MGP_AJ_G0028668.1 mouse_genomes_project 4 116994475 116995507 + Scmh1 protein_coding processed_transcript MGP_AJ_T0010613.1 MGP_AJ_G0008735.1 mouse_genomes_project 4 117250198 117250290 - Mir30e miRNA miRNA MGP_AJ_T0068879.1 MGP_AJ_G0028956.1 mouse_genomes_project 4 135136894 135141193 + MGP_AJ_P0068879 Mul1 protein_coding protein_coding MGP_AJ_T0068880.1 MGP_AJ_G0028956.1 mouse_genomes_project 4 135136931 135144427 + MGP_AJ_P0068880 Mul1 protein_coding protein_coding MGP_AJ_T0066197.1 MGP_AJ_G0028361.1 mouse_genomes_project 4 79604218 79608507 - MGP_AJ_P0066197 Cer1 protein_coding protein_coding MGP_AJ_T0014628.1 MGP_AJ_G0012723.1 mouse_genomes_project 4 80206708 80206971 - processed_pseudogene processed_pseudogene MGP_AJ_T0004437.1 MGP_AJ_G0003863.1 mouse_genomes_project 4 31392367 31397113 + Gm12364 antisense antisense MGP_AJ_T0067724.1 MGP_AJ_G0028703.1 mouse_genomes_project 4 120367234 120392657 + Rhbdl2 protein_coding processed_transcript MGP_AJ_T0067725.1 MGP_AJ_G0028703.1 mouse_genomes_project 4 120367235 120413433 + MGP_AJ_P0067725 Rhbdl2 protein_coding protein_coding MGP_AJ_T0067726.1 MGP_AJ_G0028703.1 mouse_genomes_project 4 120377569 120391300 + Rhbdl2 protein_coding processed_transcript MGP_AJ_T0067727.1 MGP_AJ_G0028703.1 mouse_genomes_project 4 120391072 120413433 + MGP_AJ_P0067727 Rhbdl2 protein_coding protein_coding MGP_AJ_T0067728.1 MGP_AJ_G0028703.1 mouse_genomes_project 4 120394489 120397456 + Rhbdl2 protein_coding processed_transcript MGP_AJ_T0099894.1 MGP_AJ_G0037860.1 mouse_genomes_project 4 6171903 6172066 - Gm24152 snRNA snRNA MGP_AJ_T0008036.1 MGP_AJ_G0006558.1 mouse_genomes_project 4 150727205 150728559 - Gm13173 lincRNA lincRNA MGP_AJ_T0004554.1 MGP_AJ_G0003953.1 mouse_genomes_project 4 131753772 131754637 - Gm16224 antisense antisense MGP_AJ_T0014559.1 MGP_AJ_G0012654.1 mouse_genomes_project 4 51471441 51473127 + processed_pseudogene processed_pseudogene MGP_AJ_T0014793.1 MGP_AJ_G0012888.1 mouse_genomes_project 4 131994678 131994756 + processed_pseudogene processed_pseudogene MGP_AJ_T0007850.1 MGP_AJ_G0006416.1 mouse_genomes_project 4 49893112 49901987 - AI427809 lincRNA lincRNA MGP_AJ_T0007851.1 MGP_AJ_G0006416.1 mouse_genomes_project 4 49893649 49894304 - AI427809 lincRNA lincRNA MGP_AJ_T0007852.1 MGP_AJ_G0006416.1 mouse_genomes_project 4 49894211 49897247 - AI427809 lincRNA lincRNA MGP_AJ_T0007853.1 MGP_AJ_G0006416.1 mouse_genomes_project 4 49894488 49895588 - AI427809 lincRNA lincRNA MGP_AJ_T0068054.1 MGP_AJ_G0028782.1 mouse_genomes_project 4 126139662 126167112 + MGP_AJ_P0068054 Bsdc1 protein_coding protein_coding MGP_AJ_T0068055.1 MGP_AJ_G0028782.1 mouse_genomes_project 4 126139753 126145072 + Bsdc1 protein_coding processed_transcript MGP_AJ_T0068056.1 MGP_AJ_G0028782.1 mouse_genomes_project 4 126139765 126148256 + Bsdc1 protein_coding retained_intron MGP_AJ_T0068057.1 MGP_AJ_G0028782.1 mouse_genomes_project 4 126139765 126145060 + Bsdc1 protein_coding processed_transcript MGP_AJ_T0068058.1 MGP_AJ_G0028782.1 mouse_genomes_project 4 126139768 126144045 + Bsdc1 protein_coding retained_intron MGP_AJ_T0068059.1 MGP_AJ_G0028782.1 mouse_genomes_project 4 126139917 126145072 + MGP_AJ_P0068059 Bsdc1 protein_coding protein_coding MGP_AJ_T0068060.1 MGP_AJ_G0028782.1 mouse_genomes_project 4 126142623 126143624 + Bsdc1 protein_coding processed_transcript MGP_AJ_T0068061.1 MGP_AJ_G0028782.1 mouse_genomes_project 4 126149946 126151986 + Bsdc1 protein_coding retained_intron MGP_AJ_T0064990.1 MGP_AJ_G0028077.1 mouse_genomes_project 4 29539669 29571569 + MGP_AJ_P0064990 Gabrr1 protein_coding protein_coding MGP_AJ_T0099022.1 MGP_AJ_G0036999.1 mouse_genomes_project 4 80444958 80445439 + Gm26968 sense_intronic sense_intronic MGP_AJ_T0014790.1 MGP_AJ_G0012885.1 mouse_genomes_project 4 131093579 131094332 + processed_pseudogene processed_pseudogene MGP_AJ_T0066759.1 MGP_AJ_G0028494.1 mouse_genomes_project 4 103905040 103915905 + MGP_AJ_P0066759 Cdcp2 protein_coding protein_coding MGP_AJ_T0099904.1 MGP_AJ_G0037870.1 mouse_genomes_project 4 30519921 30520029 + Gm25623 snRNA snRNA MGP_AJ_T0066054.1 MGP_AJ_G0028326.1 mouse_genomes_project 4 60110033 60120746 + MGP_AJ_P0066054 Orm3 protein_coding unknown_likely_coding MGP_AJ_T0066055.1 MGP_AJ_G0028326.1 mouse_genomes_project 4 60116717 60120860 + MGP_AJ_P0066055 Orm3 protein_coding protein_coding MGP_AJ_T0014446.1 MGP_AJ_G0012541.1 mouse_genomes_project 4 18129914 18130183 + processed_pseudogene processed_pseudogene MGP_AJ_T0014776.1 MGP_AJ_G0012871.1 mouse_genomes_project 4 126054284 126054620 + processed_pseudogene processed_pseudogene MGP_AJ_T0068286.1 MGP_AJ_G0028823.1 mouse_genomes_project 4 128736633 128765077 - MGP_AJ_P0068286 protein_coding protein_coding MGP_AJ_T0068287.1 MGP_AJ_G0028823.1 mouse_genomes_project 4 128738011 128764865 - MGP_AJ_P0068287 protein_coding protein_coding MGP_AJ_T0101225.1 MGP_AJ_G0039191.1 mouse_genomes_project 4 70383775 70383908 - Gm24170 snoRNA snoRNA MGP_AJ_T0014457.1 MGP_AJ_G0012552.1 mouse_genomes_project 4 21757958 21758652 + processed_pseudogene processed_pseudogene MGP_AJ_T0008025.1 MGP_AJ_G0006547.1 mouse_genomes_project 4 139097567 139137972 - Gm13052 lincRNA lincRNA MGP_AJ_T0065780.1 MGP_AJ_G0028250.1 mouse_genomes_project 4 49062385 49115486 + MGP_AJ_P0065780 Smc2 protein_coding protein_coding MGP_AJ_T0065781.1 MGP_AJ_G0028250.1 mouse_genomes_project 4 49062385 49115486 + MGP_AJ_P0065781 Smc2 protein_coding protein_coding MGP_AJ_T0065782.1 MGP_AJ_G0028250.1 mouse_genomes_project 4 49062394 49070701 + Smc2 protein_coding processed_transcript MGP_AJ_T0065783.1 MGP_AJ_G0028250.1 mouse_genomes_project 4 49062408 49078597 + Smc2 protein_coding processed_transcript MGP_AJ_T0065784.1 MGP_AJ_G0028250.1 mouse_genomes_project 4 49062411 49085843 + MGP_AJ_P0065784 Smc2 protein_coding protein_coding MGP_AJ_T0067801.1 MGP_AJ_G0028725.1 mouse_genomes_project 4 122099175 122321340 + MGP_AJ_P0067801 Grik3 protein_coding protein_coding MGP_AJ_T0065011.1 MGP_AJ_G0028085.1 mouse_genomes_project 4 30971659 31031611 - MGP_AJ_P0065011 Orc3 protein_coding protein_coding MGP_AJ_T0065012.1 MGP_AJ_G0028085.1 mouse_genomes_project 4 30971659 31031580 - MGP_AJ_P0065012 Orc3 protein_coding protein_coding MGP_AJ_T0065013.1 MGP_AJ_G0028085.1 mouse_genomes_project 4 30972428 31013051 - Orc3 protein_coding processed_transcript MGP_AJ_T0065014.1 MGP_AJ_G0028085.1 mouse_genomes_project 4 30973249 30977747 - Orc3 protein_coding processed_transcript MGP_AJ_T0065015.1 MGP_AJ_G0028085.1 mouse_genomes_project 4 30978493 31031578 - Orc3 protein_coding processed_transcript MGP_AJ_T0065016.1 MGP_AJ_G0028085.1 mouse_genomes_project 4 31006659 31009322 - Orc3 protein_coding processed_transcript MGP_AJ_T0065017.1 MGP_AJ_G0028085.1 mouse_genomes_project 4 31007185 31031560 - MGP_AJ_P0065017 Orc3 protein_coding protein_coding MGP_AJ_T0065018.1 MGP_AJ_G0028085.1 mouse_genomes_project 4 31013001 31031570 - Orc3 protein_coding processed_transcript MGP_AJ_T0065019.1 MGP_AJ_G0028085.1 mouse_genomes_project 4 31013089 31031576 - Orc3 protein_coding processed_transcript MGP_AJ_T0065020.1 MGP_AJ_G0028085.1 mouse_genomes_project 4 31013675 31031571 - Orc3 protein_coding processed_transcript MGP_AJ_T0069867.1 MGP_AJ_G0029185.1 mouse_genomes_project 4 153272444 153275174 - MGP_AJ_P0069867 Mmp23 protein_coding protein_coding MGP_AJ_T0069868.1 MGP_AJ_G0029185.1 mouse_genomes_project 4 153272446 153273815 - Mmp23 protein_coding retained_intron MGP_AJ_T0069869.1 MGP_AJ_G0029185.1 mouse_genomes_project 4 153274042 153274997 - Mmp23 protein_coding retained_intron MGP_AJ_T0069870.1 MGP_AJ_G0029185.1 mouse_genomes_project 4 153274059 153274682 - Mmp23 protein_coding retained_intron MGP_AJ_T0000340.1 MGP_AJ_G0000284.1 mouse_genomes_project 4 76775569 76775632 + mt-Tt Mt_tRNA Mt_tRNA MGP_AJ_T0014397.1 MGP_AJ_G0012492.1 mouse_genomes_project 4 3588432 3588900 - processed_pseudogene processed_pseudogene MGP_AJ_T0067254.1 MGP_AJ_G0028592.1 mouse_genomes_project 4 113086677 113101688 + MGP_AJ_P0067254 Prdx1 protein_coding protein_coding MGP_AJ_T0067255.1 MGP_AJ_G0028592.1 mouse_genomes_project 4 113086732 113089028 + Prdx1 protein_coding retained_intron MGP_AJ_T0067256.1 MGP_AJ_G0028592.1 mouse_genomes_project 4 113086732 113094973 + MGP_AJ_P0067256 Prdx1 protein_coding protein_coding MGP_AJ_T0067257.1 MGP_AJ_G0028592.1 mouse_genomes_project 4 113086994 113094123 + MGP_AJ_P0067257 Prdx1 protein_coding protein_coding MGP_AJ_T0067258.1 MGP_AJ_G0028592.1 mouse_genomes_project 4 113087020 113100403 + MGP_AJ_P0067258 Prdx1 protein_coding protein_coding MGP_AJ_T0067259.1 MGP_AJ_G0028592.1 mouse_genomes_project 4 113088442 113100317 + MGP_AJ_P0067259 Prdx1 protein_coding protein_coding MGP_AJ_T0069207.1 MGP_AJ_G0029058.1 mouse_genomes_project 4 141501645 141521888 - MGP_AJ_P0069207 1700012P22Rik protein_coding protein_coding MGP_AJ_T0014746.1 MGP_AJ_G0012841.1 mouse_genomes_project 4 117601401 117601824 - processed_pseudogene processed_pseudogene MGP_AJ_T0099024.1 MGP_AJ_G0037001.1 mouse_genomes_project 4 96861328 96862549 + Gm12701 sense_intronic sense_intronic MGP_AJ_T0014757.1 MGP_AJ_G0012852.1 mouse_genomes_project 4 119838417 119838990 - processed_pseudogene processed_pseudogene MGP_AJ_T0014626.1 MGP_AJ_G0012721.1 mouse_genomes_project 4 79379098 79379365 + processed_pseudogene processed_pseudogene MGP_AJ_T0101200.1 MGP_AJ_G0039166.1 mouse_genomes_project 4 37650388 37650465 - Gm22888 snoRNA snoRNA MGP_AJ_T0007875.1 MGP_AJ_G0006435.1 mouse_genomes_project 4 60849678 60857922 + Gm11216 lincRNA lincRNA MGP_AJ_T0098674.1 MGP_AJ_G0036658.1 mouse_genomes_project 4 9371742 9371849 + n-R5s182 rRNA rRNA MGP_AJ_T0014412.1 MGP_AJ_G0012507.1 mouse_genomes_project 4 8191532 8192385 - processed_pseudogene processed_pseudogene MGP_AJ_T0007937.1 MGP_AJ_G0006485.1 mouse_genomes_project 4 112209030 112212824 + Gm12847 lincRNA lincRNA MGP_AJ_T0068954.1 MGP_AJ_G0028977.1 mouse_genomes_project 4 136071340 136187842 + MGP_AJ_P0068954 Ubr4 protein_coding protein_coding MGP_AJ_T0068956.1 MGP_AJ_G0028977.1 mouse_genomes_project 4 136098942 136207610 + MGP_AJ_P0068956 Ubr4 protein_coding protein_coding MGP_AJ_T0068957.1 MGP_AJ_G0028977.1 mouse_genomes_project 4 136098942 136207668 + MGP_AJ_P0068957 Ubr4 protein_coding protein_coding MGP_AJ_T0068958.1 MGP_AJ_G0028977.1 mouse_genomes_project 4 136098952 136115812 + Ubr4 protein_coding processed_transcript MGP_AJ_T0068959.1 MGP_AJ_G0028977.1 mouse_genomes_project 4 136132571 136170052 + MGP_AJ_P0068959 Ubr4 protein_coding protein_coding MGP_AJ_T0068960.1 MGP_AJ_G0028977.1 mouse_genomes_project 4 136134313 136135128 + Ubr4 protein_coding retained_intron MGP_AJ_T0068961.1 MGP_AJ_G0028977.1 mouse_genomes_project 4 136153099 136156232 + MGP_AJ_P0068961 Ubr4 protein_coding protein_coding MGP_AJ_T0068962.1 MGP_AJ_G0028977.1 mouse_genomes_project 4 136181337 136182054 + Ubr4 protein_coding retained_intron MGP_AJ_T0068963.1 MGP_AJ_G0028977.1 mouse_genomes_project 4 136195131 136198895 + Ubr4 protein_coding retained_intron MGP_AJ_T0068964.1 MGP_AJ_G0028977.1 mouse_genomes_project 4 136197028 136200685 + Ubr4 protein_coding processed_transcript MGP_AJ_T0068965.1 MGP_AJ_G0028977.1 mouse_genomes_project 4 136197211 136199138 + Ubr4 protein_coding retained_intron MGP_AJ_T0068966.1 MGP_AJ_G0028977.1 mouse_genomes_project 4 136198464 136200767 + Ubr4 protein_coding retained_intron MGP_AJ_T0007845.1 MGP_AJ_G0006411.1 mouse_genomes_project 4 42390287 42391541 + Gm12410 lincRNA lincRNA MGP_AJ_T0099020.1 MGP_AJ_G0036997.1 mouse_genomes_project 4 55782445 55784830 - Gm12594 sense_intronic sense_intronic MGP_AJ_T0011581.1 MGP_AJ_G0009703.1 mouse_genomes_project 4 113126534 113126625 + Gm27688 misc_RNA misc_RNA MGP_AJ_T0098448.1 MGP_AJ_G0036432.1 mouse_genomes_project 4 56209118 56209590 + pseudogene pseudogene MGP_AJ_T0065092.1 MGP_AJ_G0028103.1 mouse_genomes_project 4 37122867 37143653 - MGP_AJ_P0065092 Aptx protein_coding protein_coding MGP_AJ_T0065093.1 MGP_AJ_G0028103.1 mouse_genomes_project 4 37122867 37143933 - MGP_AJ_P0065093 Aptx protein_coding protein_coding MGP_AJ_T0065094.1 MGP_AJ_G0028103.1 mouse_genomes_project 4 37125423 37143901 - MGP_AJ_P0065094 Aptx protein_coding protein_coding MGP_AJ_T0065095.1 MGP_AJ_G0028103.1 mouse_genomes_project 4 37126460 37143926 - MGP_AJ_P0065095 Aptx protein_coding nonsense_mediated_decay MGP_AJ_T0065096.1 MGP_AJ_G0028103.1 mouse_genomes_project 4 37131986 37135192 - Aptx protein_coding processed_transcript MGP_AJ_T0065097.1 MGP_AJ_G0028103.1 mouse_genomes_project 4 37135704 37143455 - MGP_AJ_P0065097 Aptx protein_coding nonsense_mediated_decay MGP_AJ_T0069597.1 MGP_AJ_G0029139.1 mouse_genomes_project 4 149708489 149712092 + MGP_AJ_P0069597 Hes2 protein_coding protein_coding MGP_AJ_T0069598.1 MGP_AJ_G0029139.1 mouse_genomes_project 4 149709171 149710223 + Hes2 protein_coding processed_transcript MGP_AJ_T0068615.1 MGP_AJ_G0028897.1 mouse_genomes_project 4 131539922 131546619 + MGP_AJ_P0068615 Syf2 protein_coding protein_coding MGP_AJ_T0068616.1 MGP_AJ_G0028897.1 mouse_genomes_project 4 131539926 131544084 + Syf2 protein_coding retained_intron MGP_AJ_T0068617.1 MGP_AJ_G0028897.1 mouse_genomes_project 4 131540034 131545113 + Syf2 protein_coding retained_intron MGP_AJ_T0068506.1 MGP_AJ_G0028871.1 mouse_genomes_project 4 130689031 130714640 + MGP_AJ_P0068506 Ubxn11 protein_coding protein_coding MGP_AJ_T0068507.1 MGP_AJ_G0028871.1 mouse_genomes_project 4 130689036 130713048 + Ubxn11 protein_coding processed_transcript MGP_AJ_T0068508.1 MGP_AJ_G0028871.1 mouse_genomes_project 4 130689069 130713657 + Ubxn11 protein_coding processed_transcript MGP_AJ_T0068509.1 MGP_AJ_G0028871.1 mouse_genomes_project 4 130689081 130714658 + Ubxn11 protein_coding processed_transcript MGP_AJ_T0068510.1 MGP_AJ_G0028871.1 mouse_genomes_project 4 130689084 130704036 + MGP_AJ_P0068510 Ubxn11 protein_coding protein_coding MGP_AJ_T0068511.1 MGP_AJ_G0028871.1 mouse_genomes_project 4 130689085 130698137 + Ubxn11 protein_coding processed_transcript MGP_AJ_T0068512.1 MGP_AJ_G0028871.1 mouse_genomes_project 4 130696291 130700848 + Ubxn11 protein_coding processed_transcript MGP_AJ_T0068513.1 MGP_AJ_G0028871.1 mouse_genomes_project 4 130700428 130711481 + Ubxn11 protein_coding processed_transcript MGP_AJ_T0068514.1 MGP_AJ_G0028871.1 mouse_genomes_project 4 130711351 130714657 + Ubxn11 protein_coding processed_transcript MGP_AJ_T0068515.1 MGP_AJ_G0028871.1 mouse_genomes_project 4 130711933 130714383 + MGP_AJ_P0068515 Ubxn11 protein_coding protein_coding MGP_AJ_T0068516.1 MGP_AJ_G0028871.1 mouse_genomes_project 4 130713809 130714658 + Ubxn11 protein_coding processed_transcript MGP_AJ_T0004548.1 MGP_AJ_G0003948.1 mouse_genomes_project 4 129065805 129071905 - Gm12981 antisense antisense MGP_AJ_T0069610.1 MGP_AJ_G0029143.1 mouse_genomes_project 4 149856343 149866238 + MGP_AJ_P0069610 Icmt protein_coding protein_coding MGP_AJ_T0069611.1 MGP_AJ_G0029143.1 mouse_genomes_project 4 149856420 149866237 + MGP_AJ_P0069611 Icmt protein_coding nonsense_mediated_decay MGP_AJ_T0069612.1 MGP_AJ_G0029143.1 mouse_genomes_project 4 149856772 149859871 + Icmt protein_coding processed_transcript MGP_AJ_T0069613.1 MGP_AJ_G0029143.1 mouse_genomes_project 4 149864503 149866185 + Icmt protein_coding processed_transcript MGP_AJ_T0014449.1 MGP_AJ_G0012544.1 mouse_genomes_project 4 18760495 18761001 + processed_pseudogene processed_pseudogene MGP_AJ_T0068873.1 MGP_AJ_G0028953.1 mouse_genomes_project 4 135014223 135017236 - MGP_AJ_P0068873 Pink1 protein_coding protein_coding MGP_AJ_T0068874.1 MGP_AJ_G0028953.1 mouse_genomes_project 4 135014226 135027181 - MGP_AJ_P0068874 Pink1 protein_coding protein_coding MGP_AJ_T0068875.1 MGP_AJ_G0028953.1 mouse_genomes_project 4 135014736 135027114 - MGP_AJ_P0068875 Pink1 protein_coding protein_coding MGP_AJ_T0004476.1 MGP_AJ_G0003898.1 mouse_genomes_project 4 91779303 91796150 + Junos antisense antisense MGP_AJ_T0004477.1 MGP_AJ_G0003898.1 mouse_genomes_project 4 91780738 91789388 + Junos antisense antisense MGP_AJ_T0004478.1 MGP_AJ_G0003898.1 mouse_genomes_project 4 91781027 91888863 + Junos antisense antisense MGP_AJ_T0004479.1 MGP_AJ_G0003898.1 mouse_genomes_project 4 91805152 91886052 + Junos antisense antisense MGP_AJ_T0004480.1 MGP_AJ_G0003898.1 mouse_genomes_project 4 91805299 91867567 + Junos antisense antisense MGP_AJ_T0004481.1 MGP_AJ_G0003898.1 mouse_genomes_project 4 91823134 91890929 + Junos antisense antisense MGP_AJ_T0004482.1 MGP_AJ_G0003898.1 mouse_genomes_project 4 91828348 91895596 + Junos antisense antisense MGP_AJ_T0004483.1 MGP_AJ_G0003898.1 mouse_genomes_project 4 91853777 91898912 + Junos antisense antisense MGP_AJ_T0066281.1 MGP_AJ_G0028373.1 mouse_genomes_project 4 83334112 83367391 - MGP_AJ_P0066281 Haus6 protein_coding protein_coding MGP_AJ_T0066282.1 MGP_AJ_G0028373.1 mouse_genomes_project 4 83340279 83367391 - Haus6 protein_coding processed_transcript MGP_AJ_T0066283.1 MGP_AJ_G0028373.1 mouse_genomes_project 4 83358159 83367355 - Haus6 protein_coding processed_transcript MGP_AJ_T0066284.1 MGP_AJ_G0028373.1 mouse_genomes_project 4 83360919 83367385 - MGP_AJ_P0066284 Haus6 protein_coding protein_coding MGP_AJ_T0014484.1 MGP_AJ_G0012579.1 mouse_genomes_project 4 28442586 28443828 + processed_pseudogene processed_pseudogene MGP_AJ_T0068863.1 MGP_AJ_G0028950.1 mouse_genomes_project 4 134949515 134960458 + MGP_AJ_P0068863 Sh2d5 protein_coding protein_coding MGP_AJ_T0068864.1 MGP_AJ_G0028950.1 mouse_genomes_project 4 134949525 134956414 + MGP_AJ_P0068864 Sh2d5 protein_coding protein_coding MGP_AJ_T0068865.1 MGP_AJ_G0028950.1 mouse_genomes_project 4 134949535 134954823 + Sh2d5 protein_coding processed_transcript MGP_AJ_T0068867.1 MGP_AJ_G0028950.1 mouse_genomes_project 4 134949576 134960458 + MGP_AJ_P0068867 Sh2d5 protein_coding protein_coding MGP_AJ_T0068868.1 MGP_AJ_G0028950.1 mouse_genomes_project 4 134955869 134958237 + Sh2d5 protein_coding retained_intron MGP_AJ_T0069383.1 MGP_AJ_G0029102.1 mouse_genomes_project 4 146616569 146754373 - MGP_AJ_P0069383 Kif1b protein_coding protein_coding MGP_AJ_T0069384.1 MGP_AJ_G0029102.1 mouse_genomes_project 4 146618268 146629929 - Kif1b protein_coding retained_intron MGP_AJ_T0069385.1 MGP_AJ_G0029102.1 mouse_genomes_project 4 146619113 146642030 - MGP_AJ_P0069385 Kif1b protein_coding protein_coding MGP_AJ_T0069386.1 MGP_AJ_G0029102.1 mouse_genomes_project 4 146620486 146754187 - MGP_AJ_P0069386 Kif1b protein_coding protein_coding MGP_AJ_T0069387.1 MGP_AJ_G0029102.1 mouse_genomes_project 4 146650136 146653801 - Kif1b protein_coding retained_intron MGP_AJ_T0069388.1 MGP_AJ_G0029102.1 mouse_genomes_project 4 146650535 146657494 - Kif1b protein_coding retained_intron MGP_AJ_T0069389.1 MGP_AJ_G0029102.1 mouse_genomes_project 4 146658674 146667177 - Kif1b protein_coding retained_intron MGP_AJ_T0069390.1 MGP_AJ_G0029102.1 mouse_genomes_project 4 146677870 146754379 - MGP_AJ_P0069390 Kif1b protein_coding unknown_likely_coding MGP_AJ_T0069391.1 MGP_AJ_G0029102.1 mouse_genomes_project 4 146677877 146754304 - MGP_AJ_P0069391 Kif1b protein_coding protein_coding MGP_AJ_T0069392.1 MGP_AJ_G0029102.1 mouse_genomes_project 4 146689565 146692189 - Kif1b protein_coding retained_intron MGP_AJ_T0069393.1 MGP_AJ_G0029102.1 mouse_genomes_project 4 146709009 146754374 - Kif1b protein_coding retained_intron MGP_AJ_T0069394.1 MGP_AJ_G0029102.1 mouse_genomes_project 4 146737628 146754345 - Kif1b protein_coding retained_intron MGP_AJ_T0067083.1 MGP_AJ_G0028553.1 mouse_genomes_project 4 111268938 111269805 - MGP_AJ_P0067083 Foxe3 protein_coding protein_coding MGP_AJ_T0101264.1 MGP_AJ_G0039230.1 mouse_genomes_project 4 128908819 128909024 - Snora73b snoRNA snoRNA MGP_AJ_T0014490.1 MGP_AJ_G0012585.1 mouse_genomes_project 4 29362893 29363318 + processed_pseudogene processed_pseudogene MGP_AJ_T0069711.1 MGP_AJ_G0029159.1 mouse_genomes_project 4 151774627 151880349 + MGP_AJ_P0069711 Megf6 protein_coding protein_coding MGP_AJ_T0069712.1 MGP_AJ_G0029159.1 mouse_genomes_project 4 151842162 151876375 + MGP_AJ_P0069712 Megf6 protein_coding protein_coding MGP_AJ_T0069713.1 MGP_AJ_G0029159.1 mouse_genomes_project 4 151854014 151856937 + Megf6 protein_coding retained_intron MGP_AJ_T0069714.1 MGP_AJ_G0029159.1 mouse_genomes_project 4 151869253 151879820 + Megf6 protein_coding processed_transcript MGP_AJ_T0069715.1 MGP_AJ_G0029159.1 mouse_genomes_project 4 151870809 151875169 + MGP_AJ_P0069715 Megf6 protein_coding protein_coding MGP_AJ_T0069716.1 MGP_AJ_G0029159.1 mouse_genomes_project 4 151874424 151878764 + Megf6 protein_coding retained_intron MGP_AJ_T0069717.1 MGP_AJ_G0029159.1 mouse_genomes_project 4 151874519 151875675 + Megf6 protein_coding retained_intron MGP_AJ_T0067291.1 MGP_AJ_G0028598.1 mouse_genomes_project 4 113220696 113222500 - MGP_AJ_P0067291 Hpdl protein_coding protein_coding MGP_AJ_T0008019.1 MGP_AJ_G0006541.1 mouse_genomes_project 4 137172992 137196152 + Gm13026 lincRNA lincRNA MGP_AJ_T0065333.1 MGP_AJ_G0028157.1 mouse_genomes_project 4 39699318 39801533 + Unc13b protein_coding retained_intron MGP_AJ_T0065334.1 MGP_AJ_G0028157.1 mouse_genomes_project 4 39699334 39903307 + MGP_AJ_P0065334 Unc13b protein_coding protein_coding MGP_AJ_T0065335.1 MGP_AJ_G0028157.1 mouse_genomes_project 4 39699341 39806883 + Unc13b protein_coding processed_transcript MGP_AJ_T0065336.1 MGP_AJ_G0028157.1 mouse_genomes_project 4 39699349 39803966 + Unc13b protein_coding retained_intron MGP_AJ_T0065337.1 MGP_AJ_G0028157.1 mouse_genomes_project 4 39699438 39902064 + MGP_AJ_P0065337 Unc13b protein_coding protein_coding MGP_AJ_T0065338.1 MGP_AJ_G0028157.1 mouse_genomes_project 4 39699438 39902064 + MGP_AJ_P0065338 Unc13b protein_coding protein_coding MGP_AJ_T0065339.1 MGP_AJ_G0028157.1 mouse_genomes_project 4 39699445 39902047 + MGP_AJ_P0065339 Unc13b protein_coding protein_coding MGP_AJ_T0065340.1 MGP_AJ_G0028157.1 mouse_genomes_project 4 39699629 39818545 + MGP_AJ_P0065340 Unc13b protein_coding unknown_likely_coding MGP_AJ_T0065341.1 MGP_AJ_G0028157.1 mouse_genomes_project 4 39757329 39872057 + Unc13b protein_coding processed_transcript MGP_AJ_T0065342.1 MGP_AJ_G0028157.1 mouse_genomes_project 4 39813378 39866823 + Unc13b protein_coding processed_transcript MGP_AJ_T0065343.1 MGP_AJ_G0028157.1 mouse_genomes_project 4 39815991 39871375 + MGP_AJ_P0065343 Unc13b protein_coding protein_coding MGP_AJ_T0065344.1 MGP_AJ_G0028157.1 mouse_genomes_project 4 39850092 39903316 + MGP_AJ_P0065344 Unc13b protein_coding unknown_likely_coding MGP_AJ_T0065345.1 MGP_AJ_G0028157.1 mouse_genomes_project 4 39864387 39867238 + Unc13b protein_coding retained_intron MGP_AJ_T0065346.1 MGP_AJ_G0028157.1 mouse_genomes_project 4 39868087 39884095 + Unc13b protein_coding retained_intron MGP_AJ_T0065347.1 MGP_AJ_G0028157.1 mouse_genomes_project 4 39886826 39893924 + Unc13b protein_coding retained_intron MGP_AJ_T0065348.1 MGP_AJ_G0028157.1 mouse_genomes_project 4 39893202 39896081 + MGP_AJ_P0065348 Unc13b protein_coding protein_coding MGP_AJ_T0065349.1 MGP_AJ_G0028157.1 mouse_genomes_project 4 39894489 39899400 + Unc13b protein_coding retained_intron MGP_AJ_T0066126.1 MGP_AJ_G0028348.1 mouse_genomes_project 4 70720229 70722612 - 2310002L09Rik protein_coding processed_transcript MGP_AJ_T0066127.1 MGP_AJ_G0028348.1 mouse_genomes_project 4 70720229 70731657 - MGP_AJ_P0066127 2310002L09Rik protein_coding protein_coding MGP_AJ_T0066128.1 MGP_AJ_G0028348.1 mouse_genomes_project 4 70722389 70731656 - MGP_AJ_P0066128 2310002L09Rik protein_coding protein_coding MGP_AJ_T0065229.1 MGP_AJ_G0028134.1 mouse_genomes_project 4 38226464 38227267 - protein_coding processed_transcript MGP_AJ_T0065230.1 MGP_AJ_G0028134.1 mouse_genomes_project 4 38226464 38231831 - protein_coding processed_transcript MGP_AJ_T0065231.1 MGP_AJ_G0028134.1 mouse_genomes_project 4 38226464 38236843 - protein_coding processed_transcript MGP_AJ_T0065232.1 MGP_AJ_G0028134.1 mouse_genomes_project 4 38226464 38231895 - protein_coding processed_transcript MGP_AJ_T0065233.1 MGP_AJ_G0028134.1 mouse_genomes_project 4 38226464 38236840 - MGP_AJ_P0065233 protein_coding protein_coding MGP_AJ_T0065234.1 MGP_AJ_G0028134.1 mouse_genomes_project 4 38226464 38236885 - MGP_AJ_P0065234 protein_coding protein_coding MGP_AJ_T0065235.1 MGP_AJ_G0028134.1 mouse_genomes_project 4 38226464 38228546 - MGP_AJ_P0065235 protein_coding protein_coding MGP_AJ_T0065236.1 MGP_AJ_G0028134.1 mouse_genomes_project 4 38226464 38227222 - MGP_AJ_P0065236 protein_coding protein_coding MGP_AJ_T0065239.1 MGP_AJ_G0028134.1 mouse_genomes_project 4 38226475 38227210 - MGP_AJ_P0065239 protein_coding protein_coding MGP_AJ_T0065244.1 MGP_AJ_G0028134.1 mouse_genomes_project 4 38226866 38236913 - protein_coding processed_transcript MGP_AJ_T0065245.1 MGP_AJ_G0028134.1 mouse_genomes_project 4 38226900 38232231 - protein_coding processed_transcript MGP_AJ_T0065248.1 MGP_AJ_G0028134.1 mouse_genomes_project 4 38231461 38236940 - protein_coding processed_transcript MGP_AJ_T0065249.1 MGP_AJ_G0028134.1 mouse_genomes_project 4 38231481 38236990 - protein_coding processed_transcript MGP_AJ_T0065250.1 MGP_AJ_G0028134.1 mouse_genomes_project 4 38231481 38236912 - protein_coding processed_transcript MGP_AJ_T0065251.1 MGP_AJ_G0028134.1 mouse_genomes_project 4 38231481 38236901 - MGP_AJ_P0065251 protein_coding protein_coding MGP_AJ_T0065256.1 MGP_AJ_G0028134.1 mouse_genomes_project 4 38231708 38236940 - protein_coding processed_transcript MGP_AJ_T0065257.1 MGP_AJ_G0028134.1 mouse_genomes_project 4 38231770 38236972 - protein_coding processed_transcript MGP_AJ_T0066356.1 MGP_AJ_G0028402.1 mouse_genomes_project 4 85948354 85993918 + MGP_AJ_P0066356 Mtap protein_coding protein_coding MGP_AJ_T0066357.1 MGP_AJ_G0028402.1 mouse_genomes_project 4 85989210 85992311 + Mtap protein_coding processed_transcript MGP_AJ_T0066589.1 MGP_AJ_G0028459.1 mouse_genomes_project 4 98627325 98640368 - MGP_AJ_P0066589 C130073F10Rik protein_coding protein_coding MGP_AJ_T0014448.1 MGP_AJ_G0012543.1 mouse_genomes_project 4 18589552 18589951 - processed_pseudogene processed_pseudogene MGP_AJ_T0014782.1 MGP_AJ_G0012877.1 mouse_genomes_project 4 128772618 128773511 - processed_pseudogene processed_pseudogene MGP_AJ_T0014717.1 MGP_AJ_G0012812.1 mouse_genomes_project 4 111584514 111587343 - processed_pseudogene processed_pseudogene MGP_AJ_T0069169.1 MGP_AJ_G0029033.1 mouse_genomes_project 4 140384871 140440473 + MGP_AJ_P0069169 protein_coding protein_coding MGP_AJ_T0067691.1 MGP_AJ_G0028696.1 mouse_genomes_project 4 119763755 119778566 + MGP_AJ_P0067691 Nt5c1a protein_coding protein_coding MGP_AJ_T0007980.1 MGP_AJ_G0006514.1 mouse_genomes_project 4 127510419 127538772 + Gm12973 lincRNA lincRNA MGP_AJ_T0007827.1 MGP_AJ_G0006394.1 mouse_genomes_project 4 25555384 25556442 + Gm11916 lincRNA lincRNA MGP_AJ_T0098451.1 MGP_AJ_G0036435.1 mouse_genomes_project 4 126541224 126542867 + pseudogene pseudogene MGP_AJ_T0014699.1 MGP_AJ_G0012794.1 mouse_genomes_project 4 104139055 104140066 - processed_pseudogene processed_pseudogene MGP_AJ_T0011571.1 MGP_AJ_G0009693.1 mouse_genomes_project 4 75436688 75436774 + Gm22262 misc_RNA misc_RNA MGP_AJ_T0004599.1 MGP_AJ_G0003987.1 mouse_genomes_project 4 147022471 147024726 - Gm13066 antisense antisense MGP_AJ_T0067490.1 MGP_AJ_G0028641.1 mouse_genomes_project 4 115175519 115176461 - MGP_AJ_P0067490 Olfr1338 protein_coding protein_coding MGP_AJ_T0014737.1 MGP_AJ_G0012832.1 mouse_genomes_project 4 115212753 115213248 - processed_pseudogene processed_pseudogene MGP_AJ_T0069301.1 MGP_AJ_G0029086.1 mouse_genomes_project 4 145579988 145585520 + MGP_AJ_P0069301 protein_coding protein_coding MGP_AJ_T0018085.1 MGP_AJ_G0015550.1 mouse_genomes_project 4 119500019 119502177 + 4933421A08Rik processed_transcript processed_transcript MGP_AJ_T0014487.1 MGP_AJ_G0012582.1 mouse_genomes_project 4 29015602 29015977 + processed_pseudogene processed_pseudogene MGP_AJ_T0014840.1 MGP_AJ_G0012935.1 mouse_genomes_project 4 151825122 151825594 + processed_pseudogene processed_pseudogene MGP_AJ_T0065003.1 MGP_AJ_G0028082.1 mouse_genomes_project 4 30360545 30371221 + Cnr1 protein_coding processed_transcript MGP_AJ_T0065004.1 MGP_AJ_G0028082.1 mouse_genomes_project 4 30360584 30384735 + MGP_AJ_P0065004 Cnr1 protein_coding protein_coding MGP_AJ_T0065005.1 MGP_AJ_G0028082.1 mouse_genomes_project 4 30362154 30384723 + MGP_AJ_P0065005 Cnr1 protein_coding protein_coding MGP_AJ_T0067306.1 MGP_AJ_G0028602.1 mouse_genomes_project 4 113423260 113478622 + MGP_AJ_P0067306 Eif2b3 protein_coding protein_coding MGP_AJ_T0067307.1 MGP_AJ_G0028602.1 mouse_genomes_project 4 113423264 113491734 + MGP_AJ_P0067307 Eif2b3 protein_coding protein_coding MGP_AJ_T0067308.1 MGP_AJ_G0028602.1 mouse_genomes_project 4 113447864 113464139 + Eif2b3 protein_coding processed_transcript MGP_AJ_T0067309.1 MGP_AJ_G0028602.1 mouse_genomes_project 4 113471393 113479662 + Eif2b3 protein_coding processed_transcript MGP_AJ_T0067310.1 MGP_AJ_G0028602.1 mouse_genomes_project 4 113472386 113492299 + Eif2b3 protein_coding processed_transcript MGP_AJ_T0067311.1 MGP_AJ_G0028602.1 mouse_genomes_project 4 113486651 113491841 + Eif2b3 protein_coding processed_transcript MGP_AJ_T0068224.1 MGP_AJ_G0028813.1 mouse_genomes_project 4 127327316 127360845 + MGP_AJ_P0068224 Sdc3 protein_coding protein_coding MGP_AJ_T0068225.1 MGP_AJ_G0028813.1 mouse_genomes_project 4 127327483 127351799 + Sdc3 protein_coding retained_intron MGP_AJ_T0068226.1 MGP_AJ_G0028813.1 mouse_genomes_project 4 127346466 127353585 + MGP_AJ_P0068226 Sdc3 protein_coding protein_coding MGP_AJ_T0068227.1 MGP_AJ_G0028813.1 mouse_genomes_project 4 127348831 127353585 + MGP_AJ_P0068227 Sdc3 protein_coding protein_coding MGP_AJ_T0068228.1 MGP_AJ_G0028813.1 mouse_genomes_project 4 127351370 127356776 + Sdc3 protein_coding retained_intron MGP_AJ_T0065258.1 MGP_AJ_G0028142.1 mouse_genomes_project 4 38232498 39482582 + MGP_AJ_P0065258 4930578G10Rik protein_coding protein_coding MGP_AJ_T0065266.1 MGP_AJ_G0028142.1 mouse_genomes_project 4 39318047 39482834 + MGP_AJ_P0065266 4930578G10Rik protein_coding protein_coding MGP_AJ_T0065991.1 MGP_AJ_G0028312.1 mouse_genomes_project 4 59168547 59186556 + MGP_AJ_P0065991 Prpf4 protein_coding protein_coding MGP_AJ_T0065992.1 MGP_AJ_G0028312.1 mouse_genomes_project 4 59181495 59182897 + Prpf4 protein_coding processed_transcript MGP_AJ_T0014489.1 MGP_AJ_G0012584.1 mouse_genomes_project 4 29288631 29289241 + processed_pseudogene processed_pseudogene MGP_AJ_T0014584.1 MGP_AJ_G0012679.1 mouse_genomes_project 4 63916660 63917029 + processed_pseudogene processed_pseudogene MGP_AJ_T0066097.1 MGP_AJ_G0028340.1 mouse_genomes_project 4 63573801 63589688 + MGP_AJ_P0066097 Tlr4 protein_coding protein_coding MGP_AJ_T0066098.1 MGP_AJ_G0028340.1 mouse_genomes_project 4 63573830 63677117 + MGP_AJ_P0066098 Tlr4 protein_coding protein_coding MGP_AJ_T0066099.1 MGP_AJ_G0028340.1 mouse_genomes_project 4 63573836 63586326 + Tlr4 protein_coding processed_transcript MGP_AJ_T0066100.1 MGP_AJ_G0028340.1 mouse_genomes_project 4 63574419 63586515 + Tlr4 protein_coding processed_transcript MGP_AJ_T0066457.1 MGP_AJ_G0028431.1 mouse_genomes_project 4 93885223 93885550 - MGP_AJ_P0066457 Gm10192 protein_coding protein_coding MGP_AJ_T0004525.1 MGP_AJ_G0003931.1 mouse_genomes_project 4 116754468 116766953 + Foxo6os antisense antisense MGP_AJ_T0099909.1 MGP_AJ_G0037875.1 mouse_genomes_project 4 37494649 37494756 + Gm25637 snRNA snRNA MGP_AJ_T0066235.1 MGP_AJ_G0028367.1 mouse_genomes_project 4 80982436 81386604 - MGP_AJ_P0066235 Bnc2 protein_coding protein_coding MGP_AJ_T0066236.1 MGP_AJ_G0028367.1 mouse_genomes_project 4 80982570 81386637 - MGP_AJ_P0066236 Bnc2 protein_coding protein_coding MGP_AJ_T0066237.1 MGP_AJ_G0028367.1 mouse_genomes_project 4 80982693 81386845 - MGP_AJ_P0066237 Bnc2 protein_coding protein_coding MGP_AJ_T0066238.1 MGP_AJ_G0028367.1 mouse_genomes_project 4 80982722 80999585 - MGP_AJ_P0066238 Bnc2 protein_coding protein_coding MGP_AJ_T0066239.1 MGP_AJ_G0028367.1 mouse_genomes_project 4 80982950 81386656 - MGP_AJ_P0066239 Bnc2 protein_coding protein_coding MGP_AJ_T0066240.1 MGP_AJ_G0028367.1 mouse_genomes_project 4 80983499 80999758 - MGP_AJ_P0066240 Bnc2 protein_coding protein_coding MGP_AJ_T0066241.1 MGP_AJ_G0028367.1 mouse_genomes_project 4 80983585 80999974 - MGP_AJ_P0066241 Bnc2 protein_coding protein_coding MGP_AJ_T0066242.1 MGP_AJ_G0028367.1 mouse_genomes_project 4 80983784 80999696 - MGP_AJ_P0066242 Bnc2 protein_coding protein_coding MGP_AJ_T0066243.1 MGP_AJ_G0028367.1 mouse_genomes_project 4 80983784 80999696 - MGP_AJ_P0066243 Bnc2 protein_coding protein_coding MGP_AJ_T0066244.1 MGP_AJ_G0028367.1 mouse_genomes_project 4 81001041 81386566 - MGP_AJ_P0066244 Bnc2 protein_coding protein_coding MGP_AJ_T0066245.1 MGP_AJ_G0028367.1 mouse_genomes_project 4 81001041 81386566 - MGP_AJ_P0066245 Bnc2 protein_coding protein_coding MGP_AJ_T0066246.1 MGP_AJ_G0028367.1 mouse_genomes_project 4 81001065 81215399 - Bnc2 protein_coding processed_transcript MGP_AJ_T0066247.1 MGP_AJ_G0028367.1 mouse_genomes_project 4 81001404 81386597 - MGP_AJ_P0066247 Bnc2 protein_coding protein_coding MGP_AJ_T0066248.1 MGP_AJ_G0028367.1 mouse_genomes_project 4 81001431 81386567 - MGP_AJ_P0066248 Bnc2 protein_coding protein_coding MGP_AJ_T0066249.1 MGP_AJ_G0028367.1 mouse_genomes_project 4 81001462 81241635 - Bnc2 protein_coding processed_transcript MGP_AJ_T0066250.1 MGP_AJ_G0028367.1 mouse_genomes_project 4 81096312 81386569 - Bnc2 protein_coding retained_intron MGP_AJ_T0066251.1 MGP_AJ_G0028367.1 mouse_genomes_project 4 81098551 81386567 - MGP_AJ_P0066251 Bnc2 protein_coding nonsense_mediated_decay MGP_AJ_T0066252.1 MGP_AJ_G0028367.1 mouse_genomes_project 4 81098583 81254845 - Bnc2 protein_coding processed_transcript MGP_AJ_T0066253.1 MGP_AJ_G0028367.1 mouse_genomes_project 4 81098676 81386648 - MGP_AJ_P0066253 Bnc2 protein_coding protein_coding MGP_AJ_T0066254.1 MGP_AJ_G0028367.1 mouse_genomes_project 4 81118591 81254516 - MGP_AJ_P0066254 Bnc2 protein_coding protein_coding MGP_AJ_T0066255.1 MGP_AJ_G0028367.1 mouse_genomes_project 4 81118616 81231966 - Bnc2 protein_coding processed_transcript MGP_AJ_T0066256.1 MGP_AJ_G0028367.1 mouse_genomes_project 4 81254437 81386569 - MGP_AJ_P0066256 Bnc2 protein_coding protein_coding MGP_AJ_T0066452.1 MGP_AJ_G0028427.1 mouse_genomes_project 4 93211366 93248522 - MGP_AJ_P0066452 Cyp2j6 protein_coding protein_coding MGP_AJ_T0064758.1 MGP_AJ_G0028015.1 mouse_genomes_project 4 8509039 8517305 - MGP_AJ_P0064758 Pdp1 protein_coding protein_coding MGP_AJ_T0064759.1 MGP_AJ_G0028015.1 mouse_genomes_project 4 8510660 8516834 - MGP_AJ_P0064759 Pdp1 protein_coding protein_coding MGP_AJ_T0064760.1 MGP_AJ_G0028015.1 mouse_genomes_project 4 8510660 8516674 - MGP_AJ_P0064760 Pdp1 protein_coding protein_coding MGP_AJ_T0064761.1 MGP_AJ_G0028015.1 mouse_genomes_project 4 8510660 8516780 - MGP_AJ_P0064761 Pdp1 protein_coding protein_coding MGP_AJ_T0064762.1 MGP_AJ_G0028015.1 mouse_genomes_project 4 8510660 8517280 - MGP_AJ_P0064762 Pdp1 protein_coding protein_coding MGP_AJ_T0064763.1 MGP_AJ_G0028015.1 mouse_genomes_project 4 8510664 8517273 - MGP_AJ_P0064763 Pdp1 protein_coding protein_coding MGP_AJ_T0014740.1 MGP_AJ_G0012835.1 mouse_genomes_project 4 115961591 115962274 - processed_pseudogene processed_pseudogene MGP_AJ_T0069759.1 MGP_AJ_G0029168.1 mouse_genomes_project 4 152564589 152566038 + MGP_AJ_P0069759 Hes5 protein_coding protein_coding MGP_AJ_T0069760.1 MGP_AJ_G0029168.1 mouse_genomes_project 4 152564637 152565073 + Hes5 protein_coding processed_transcript MGP_AJ_T0068204.1 MGP_AJ_G0028808.1 mouse_genomes_project 4 127001785 127008654 + MGP_AJ_P0068204 Fabp3 protein_coding protein_coding MGP_AJ_T0066467.1 MGP_AJ_G0028433.1 mouse_genomes_project 4 94484722 94718811 + MGP_AJ_P0066467 Nfia protein_coding protein_coding MGP_AJ_T0066468.1 MGP_AJ_G0028433.1 mouse_genomes_project 4 94489597 94838143 + MGP_AJ_P0066468 Nfia protein_coding protein_coding MGP_AJ_T0066469.1 MGP_AJ_G0028433.1 mouse_genomes_project 4 94489615 94838146 + MGP_AJ_P0066469 Nfia protein_coding protein_coding MGP_AJ_T0066470.1 MGP_AJ_G0028433.1 mouse_genomes_project 4 94489792 94838143 + MGP_AJ_P0066470 Nfia protein_coding protein_coding MGP_AJ_T0066471.1 MGP_AJ_G0028433.1 mouse_genomes_project 4 94489808 94838143 + MGP_AJ_P0066471 Nfia protein_coding protein_coding MGP_AJ_T0066472.1 MGP_AJ_G0028433.1 mouse_genomes_project 4 94489823 94838143 + MGP_AJ_P0066472 Nfia protein_coding protein_coding MGP_AJ_T0066473.1 MGP_AJ_G0028433.1 mouse_genomes_project 4 94593034 94783956 + MGP_AJ_P0066473 Nfia protein_coding protein_coding MGP_AJ_T0066474.1 MGP_AJ_G0028433.1 mouse_genomes_project 4 94623929 94760744 + Nfia protein_coding processed_transcript MGP_AJ_T0069165.1 MGP_AJ_G0029030.1 mouse_genomes_project 4 140275858 140288743 - MGP_AJ_P0069165 Oog4 protein_coding protein_coding MGP_AJ_T0069166.1 MGP_AJ_G0029030.1 mouse_genomes_project 4 140275859 140288723 - MGP_AJ_P0069166 Oog4 protein_coding protein_coding MGP_AJ_T0014795.1 MGP_AJ_G0012890.1 mouse_genomes_project 4 132370573 132371051 - processed_pseudogene processed_pseudogene MGP_AJ_T0014492.1 MGP_AJ_G0012587.1 mouse_genomes_project 4 29455620 29456067 - processed_pseudogene processed_pseudogene MGP_AJ_T0099901.1 MGP_AJ_G0037867.1 mouse_genomes_project 4 24180263 24180360 + Gm25173 snRNA snRNA MGP_AJ_T0014710.1 MGP_AJ_G0012805.1 mouse_genomes_project 4 106551231 106551635 - processed_pseudogene processed_pseudogene MGP_AJ_T0018084.1 MGP_AJ_G0015549.1 mouse_genomes_project 4 115676579 115678254 + Gm12898 processed_transcript processed_transcript MGP_AJ_T0099941.1 MGP_AJ_G0037907.1 mouse_genomes_project 4 105276163 105276270 - Gm24967 snRNA snRNA MGP_AJ_T0066786.1 MGP_AJ_G0028500.1 mouse_genomes_project 4 104102049 104117498 - MGP_AJ_P0066786 Dio1 protein_coding protein_coding MGP_AJ_T0066787.1 MGP_AJ_G0028500.1 mouse_genomes_project 4 104102751 104117471 - MGP_AJ_P0066787 Dio1 protein_coding nonsense_mediated_decay MGP_AJ_T0066788.1 MGP_AJ_G0028500.1 mouse_genomes_project 4 104102918 104117453 - MGP_AJ_P0066788 Dio1 protein_coding nonsense_mediated_decay MGP_AJ_T0066789.1 MGP_AJ_G0028500.1 mouse_genomes_project 4 104102922 104117453 - MGP_AJ_P0066789 Dio1 protein_coding protein_coding MGP_AJ_T0066790.1 MGP_AJ_G0028500.1 mouse_genomes_project 4 104102952 104117447 - MGP_AJ_P0066790 Dio1 protein_coding protein_coding MGP_AJ_T0066791.1 MGP_AJ_G0028500.1 mouse_genomes_project 4 104102952 104117447 - MGP_AJ_P0066791 Dio1 protein_coding nonsense_mediated_decay MGP_AJ_T0066792.1 MGP_AJ_G0028500.1 mouse_genomes_project 4 104102952 104117447 - MGP_AJ_P0066792 Dio1 protein_coding protein_coding MGP_AJ_T0066793.1 MGP_AJ_G0028500.1 mouse_genomes_project 4 104110264 104117395 - Dio1 protein_coding processed_transcript MGP_AJ_T0004573.1 MGP_AJ_G0003969.1 mouse_genomes_project 4 138388431 138390010 + AI507597 antisense antisense MGP_AJ_T0004574.1 MGP_AJ_G0003969.1 mouse_genomes_project 4 138388759 138390010 + AI507597 antisense antisense MGP_AJ_T0010579.1 MGP_AJ_G0008701.1 mouse_genomes_project 4 33053022 33053103 - Mir876 miRNA miRNA MGP_AJ_T0069276.1 MGP_AJ_G0029082.1 mouse_genomes_project 4 145516535 145548853 - MGP_AJ_P0069276 Draxin protein_coding protein_coding MGP_AJ_T0004605.1 MGP_AJ_G0003992.1 mouse_genomes_project 4 148892994 148896107 + 4930589P08Rik antisense antisense MGP_AJ_T0065098.1 MGP_AJ_G0028104.1 mouse_genomes_project 4 37163740 37165386 + Dnaja1 protein_coding processed_transcript MGP_AJ_T0065099.1 MGP_AJ_G0028104.1 mouse_genomes_project 4 37164070 37176673 + MGP_AJ_P0065099 Dnaja1 protein_coding protein_coding MGP_AJ_T0065100.1 MGP_AJ_G0028104.1 mouse_genomes_project 4 37164149 37171681 + Dnaja1 protein_coding processed_transcript MGP_AJ_T0065101.1 MGP_AJ_G0028104.1 mouse_genomes_project 4 37164512 37175609 + Dnaja1 protein_coding processed_transcript MGP_AJ_T0065102.1 MGP_AJ_G0028104.1 mouse_genomes_project 4 37164512 37178859 + MGP_AJ_P0065102 Dnaja1 protein_coding protein_coding MGP_AJ_T0065103.1 MGP_AJ_G0028104.1 mouse_genomes_project 4 37164520 37173247 + MGP_AJ_P0065103 Dnaja1 protein_coding protein_coding MGP_AJ_T0065104.1 MGP_AJ_G0028104.1 mouse_genomes_project 4 37164535 37169654 + MGP_AJ_P0065104 Dnaja1 protein_coding protein_coding MGP_AJ_T0065105.1 MGP_AJ_G0028104.1 mouse_genomes_project 4 37164707 37167771 + MGP_AJ_P0065105 Dnaja1 protein_coding protein_coding MGP_AJ_T0065106.1 MGP_AJ_G0028104.1 mouse_genomes_project 4 37164952 37165702 + Dnaja1 protein_coding processed_transcript MGP_AJ_T0065107.1 MGP_AJ_G0028104.1 mouse_genomes_project 4 37165639 37173751 + Dnaja1 protein_coding processed_transcript MGP_AJ_T0014650.1 MGP_AJ_G0012745.1 mouse_genomes_project 4 87945240 87945846 + processed_pseudogene processed_pseudogene MGP_AJ_T0064795.1 MGP_AJ_G0028024.1 mouse_genomes_project 4 11072193 11192908 - MGP_AJ_P0064795 Slc26a7 protein_coding protein_coding MGP_AJ_T0064796.1 MGP_AJ_G0028024.1 mouse_genomes_project 4 11075052 11087023 - Slc26a7 protein_coding processed_transcript MGP_AJ_T0064797.1 MGP_AJ_G0028024.1 mouse_genomes_project 4 11142572 11192636 - MGP_AJ_P0064797 Slc26a7 protein_coding protein_coding MGP_AJ_T0064798.1 MGP_AJ_G0028024.1 mouse_genomes_project 4 11164259 11192772 - MGP_AJ_P0064798 Slc26a7 protein_coding protein_coding MGP_AJ_T0011557.1 MGP_AJ_G0009679.1 mouse_genomes_project 4 15270803 15271134 - Gm24419 misc_RNA misc_RNA MGP_AJ_T0014708.1 MGP_AJ_G0012803.1 mouse_genomes_project 4 106181067 106182226 - processed_pseudogene processed_pseudogene MGP_AJ_T0066112.1 MGP_AJ_G0028345.1 mouse_genomes_project 4 68901753 68985432 - MGP_AJ_P0066112 Tle1 protein_coding protein_coding MGP_AJ_T0066113.1 MGP_AJ_G0028345.1 mouse_genomes_project 4 68902416 68985370 - MGP_AJ_P0066113 Tle1 protein_coding protein_coding MGP_AJ_T0066114.1 MGP_AJ_G0028345.1 mouse_genomes_project 4 68902418 68985367 - MGP_AJ_P0066114 Tle1 protein_coding protein_coding MGP_AJ_T0066115.1 MGP_AJ_G0028345.1 mouse_genomes_project 4 68902421 68983605 - Tle1 protein_coding retained_intron MGP_AJ_T0066116.1 MGP_AJ_G0028345.1 mouse_genomes_project 4 68902816 68984665 - MGP_AJ_P0066116 Tle1 protein_coding protein_coding MGP_AJ_T0066117.1 MGP_AJ_G0028345.1 mouse_genomes_project 4 68902831 68905346 - Tle1 protein_coding processed_transcript MGP_AJ_T0066118.1 MGP_AJ_G0028345.1 mouse_genomes_project 4 68923088 68925814 - MGP_AJ_P0066118 Tle1 protein_coding protein_coding MGP_AJ_T0066119.1 MGP_AJ_G0028345.1 mouse_genomes_project 4 68942144 68985375 - MGP_AJ_P0066119 Tle1 protein_coding protein_coding MGP_AJ_T0066120.1 MGP_AJ_G0028345.1 mouse_genomes_project 4 68942836 68984005 - MGP_AJ_P0066120 Tle1 protein_coding protein_coding MGP_AJ_T0066121.1 MGP_AJ_G0028345.1 mouse_genomes_project 4 68951746 68985406 - Tle1 protein_coding processed_transcript MGP_AJ_T0014425.1 MGP_AJ_G0012520.1 mouse_genomes_project 4 12288664 12289509 - processed_pseudogene processed_pseudogene MGP_AJ_T0014524.1 MGP_AJ_G0012619.1 mouse_genomes_project 4 40977972 40978604 - processed_pseudogene processed_pseudogene MGP_AJ_T0007834.1 MGP_AJ_G0006401.1 mouse_genomes_project 4 36757624 36762110 + 4930509K18Rik lincRNA lincRNA MGP_AJ_T0014613.1 MGP_AJ_G0012708.1 mouse_genomes_project 4 73559611 73560005 + processed_pseudogene processed_pseudogene MGP_AJ_T0014609.1 MGP_AJ_G0012704.1 mouse_genomes_project 4 72621400 72622229 + processed_pseudogene processed_pseudogene MGP_AJ_T0068049.1 MGP_AJ_G0028780.1 mouse_genomes_project 4 126028066 126052557 - MGP_AJ_P0068049 Zbtb8a protein_coding protein_coding MGP_AJ_T0068501.1 MGP_AJ_G0028870.1 mouse_genomes_project 4 130667984 130681639 - Cd52 protein_coding processed_transcript MGP_AJ_T0068504.1 MGP_AJ_G0028870.1 mouse_genomes_project 4 130680133 130681680 - MGP_AJ_P0068504 Cd52 protein_coding protein_coding MGP_AJ_T0068505.1 MGP_AJ_G0028870.1 mouse_genomes_project 4 130680673 130681636 - Cd52 protein_coding processed_transcript MGP_AJ_T0004568.1 MGP_AJ_G0003965.1 mouse_genomes_project 4 137706555 137716911 - Gm13031 antisense antisense MGP_AJ_T0098680.1 MGP_AJ_G0036664.1 mouse_genomes_project 4 78666340 78666451 + n-R5s187 rRNA rRNA MGP_AJ_T0101221.1 MGP_AJ_G0039187.1 mouse_genomes_project 4 61196334 61196463 + Gm23950 snoRNA snoRNA MGP_AJ_T0068704.1 MGP_AJ_G0028916.1 mouse_genomes_project 4 132593138 132604478 - MGP_AJ_P0068704 Pithd1 protein_coding protein_coding MGP_AJ_T0068705.1 MGP_AJ_G0028916.1 mouse_genomes_project 4 132593744 132603152 - Pithd1 protein_coding processed_transcript MGP_AJ_T0068706.1 MGP_AJ_G0028916.1 mouse_genomes_project 4 132594072 132596500 - Pithd1 protein_coding retained_intron MGP_AJ_T0068707.1 MGP_AJ_G0028916.1 mouse_genomes_project 4 132594074 132603536 - MGP_AJ_P0068707 Pithd1 protein_coding protein_coding MGP_AJ_T0068708.1 MGP_AJ_G0028916.1 mouse_genomes_project 4 132594885 132604131 - MGP_AJ_P0068708 Pithd1 protein_coding protein_coding MGP_AJ_T0068709.1 MGP_AJ_G0028916.1 mouse_genomes_project 4 132595927 132604295 - Pithd1 protein_coding retained_intron MGP_AJ_T0068710.1 MGP_AJ_G0028916.1 mouse_genomes_project 4 132603627 132604301 - Pithd1 protein_coding processed_transcript MGP_AJ_T0007815.1 MGP_AJ_G0006383.1 mouse_genomes_project 4 10780441 10792770 - 1700120G11Rik lincRNA lincRNA MGP_AJ_T0067349.1 MGP_AJ_G0028610.1 mouse_genomes_project 4 113657875 113673955 + MGP_AJ_P0067349 Tmem53 protein_coding protein_coding MGP_AJ_T0067350.1 MGP_AJ_G0028610.1 mouse_genomes_project 4 113657964 113673889 + MGP_AJ_P0067350 Tmem53 protein_coding protein_coding MGP_AJ_T0067351.1 MGP_AJ_G0028610.1 mouse_genomes_project 4 113657966 113673957 + MGP_AJ_P0067351 Tmem53 protein_coding protein_coding MGP_AJ_T0067352.1 MGP_AJ_G0028610.1 mouse_genomes_project 4 113657986 113673271 + Tmem53 protein_coding processed_transcript MGP_AJ_T0067353.1 MGP_AJ_G0028610.1 mouse_genomes_project 4 113658265 113673955 + MGP_AJ_P0067353 Tmem53 protein_coding protein_coding MGP_AJ_T0067354.1 MGP_AJ_G0028610.1 mouse_genomes_project 4 113670745 113673957 + Tmem53 protein_coding processed_transcript MGP_AJ_T0068540.1 MGP_AJ_G0028878.1 mouse_genomes_project 4 130835531 130836943 + MGP_AJ_P0068540 E130218I03Rik protein_coding protein_coding MGP_AJ_T0068541.1 MGP_AJ_G0028878.1 mouse_genomes_project 4 130835632 130837743 + MGP_AJ_P0068541 E130218I03Rik protein_coding nonsense_mediated_decay MGP_AJ_T0068542.1 MGP_AJ_G0028878.1 mouse_genomes_project 4 130835632 130837739 + MGP_AJ_P0068542 E130218I03Rik protein_coding protein_coding MGP_AJ_T0068543.1 MGP_AJ_G0028878.1 mouse_genomes_project 4 130835645 130836859 + MGP_AJ_P0068543 E130218I03Rik protein_coding protein_coding MGP_AJ_T0068544.1 MGP_AJ_G0028878.1 mouse_genomes_project 4 130835645 130837182 + MGP_AJ_P0068544 E130218I03Rik protein_coding protein_coding MGP_AJ_T0068545.1 MGP_AJ_G0028878.1 mouse_genomes_project 4 130835646 130837422 + MGP_AJ_P0068545 E130218I03Rik protein_coding protein_coding MGP_AJ_T0068546.1 MGP_AJ_G0028878.1 mouse_genomes_project 4 130835647 130837389 + MGP_AJ_P0068546 E130218I03Rik protein_coding protein_coding MGP_AJ_T0068547.1 MGP_AJ_G0028878.1 mouse_genomes_project 4 130835852 130837147 + E130218I03Rik protein_coding processed_transcript MGP_AJ_T0102587.1 MGP_AJ_G0040329.1 mouse_genomes_project 4 70645310 70646006 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0066413.1 MGP_AJ_G0028419.1 mouse_genomes_project 4 91776804 91779992 - MGP_AJ_P0066413 Jun protein_coding protein_coding MGP_AJ_T0007979.1 MGP_AJ_G0006513.1 mouse_genomes_project 4 127320883 127322670 + Gm12972 lincRNA lincRNA MGP_AJ_T0068490.1 MGP_AJ_G0028868.1 mouse_genomes_project 4 130639016 130644594 + MGP_AJ_P0068490 Zfp683 protein_coding protein_coding MGP_AJ_T0014652.1 MGP_AJ_G0012747.1 mouse_genomes_project 4 88475783 88477115 + processed_pseudogene processed_pseudogene MGP_AJ_T0014491.1 MGP_AJ_G0012586.1 mouse_genomes_project 4 29401106 29401433 - processed_pseudogene processed_pseudogene MGP_AJ_T0069053.1 MGP_AJ_G0029001.1 mouse_genomes_project 4 138006028 138012904 + MGP_AJ_P0069053 Arhgef19 protein_coding protein_coding MGP_AJ_T0069054.1 MGP_AJ_G0029001.1 mouse_genomes_project 4 138006179 138013982 + Arhgef19 protein_coding retained_intron MGP_AJ_T0069055.1 MGP_AJ_G0029001.1 mouse_genomes_project 4 138009384 138012848 + MGP_AJ_P0069055 Arhgef19 protein_coding protein_coding MGP_AJ_T0069056.1 MGP_AJ_G0029001.1 mouse_genomes_project 4 138009398 138023897 + MGP_AJ_P0069056 Arhgef19 protein_coding protein_coding MGP_AJ_T0069057.1 MGP_AJ_G0029001.1 mouse_genomes_project 4 138009422 138013493 + MGP_AJ_P0069057 Arhgef19 protein_coding protein_coding MGP_AJ_T0069058.1 MGP_AJ_G0029001.1 mouse_genomes_project 4 138011954 138013936 + MGP_AJ_P0069058 Arhgef19 protein_coding protein_coding MGP_AJ_T0069059.1 MGP_AJ_G0029001.1 mouse_genomes_project 4 138012887 138014601 + MGP_AJ_P0069059 Arhgef19 protein_coding protein_coding MGP_AJ_T0069060.1 MGP_AJ_G0029001.1 mouse_genomes_project 4 138013417 138014468 + Arhgef19 protein_coding retained_intron MGP_AJ_T0064805.1 MGP_AJ_G0028028.1 mouse_genomes_project 4 11495226 11697057 - MGP_AJ_P0064805 Necab1 protein_coding protein_coding MGP_AJ_T0064806.1 MGP_AJ_G0028028.1 mouse_genomes_project 4 11497910 11697720 - MGP_AJ_P0064806 Necab1 protein_coding protein_coding MGP_AJ_T0064807.1 MGP_AJ_G0028028.1 mouse_genomes_project 4 11657139 11696887 - Necab1 protein_coding processed_transcript MGP_AJ_T0004467.1 MGP_AJ_G0003890.1 mouse_genomes_project 4 71038253 71039644 - A230083N12Rik antisense antisense MGP_AJ_T0014508.1 MGP_AJ_G0012603.1 mouse_genomes_project 4 34459992 34460421 + processed_pseudogene processed_pseudogene MGP_AJ_T0007969.1 MGP_AJ_G0006508.1 mouse_genomes_project 4 125936164 125939217 + Gm12976 lincRNA lincRNA MGP_AJ_T0007970.1 MGP_AJ_G0006508.1 mouse_genomes_project 4 125937921 125939217 + Gm12976 lincRNA lincRNA MGP_AJ_T0067007.1 MGP_AJ_G0028539.1 mouse_genomes_project 4 107001898 107084907 - MGP_AJ_P0067007 Elavl4 protein_coding protein_coding MGP_AJ_T0067008.1 MGP_AJ_G0028539.1 mouse_genomes_project 4 107001913 107084907 - MGP_AJ_P0067008 Elavl4 protein_coding protein_coding MGP_AJ_T0067009.1 MGP_AJ_G0028539.1 mouse_genomes_project 4 107001913 107084269 - MGP_AJ_P0067009 Elavl4 protein_coding protein_coding MGP_AJ_T0067010.1 MGP_AJ_G0028539.1 mouse_genomes_project 4 107001913 107090116 - MGP_AJ_P0067010 Elavl4 protein_coding protein_coding MGP_AJ_T0067011.1 MGP_AJ_G0028539.1 mouse_genomes_project 4 107001913 107087641 - MGP_AJ_P0067011 Elavl4 protein_coding protein_coding MGP_AJ_T0067012.1 MGP_AJ_G0028539.1 mouse_genomes_project 4 107001913 107147316 - MGP_AJ_P0067012 Elavl4 protein_coding protein_coding MGP_AJ_T0067013.1 MGP_AJ_G0028539.1 mouse_genomes_project 4 107001913 107084269 - MGP_AJ_P0067013 Elavl4 protein_coding protein_coding MGP_AJ_T0067014.1 MGP_AJ_G0028539.1 mouse_genomes_project 4 107004535 107021326 - Elavl4 protein_coding processed_transcript MGP_AJ_T0067015.1 MGP_AJ_G0028539.1 mouse_genomes_project 4 107011391 107083996 - MGP_AJ_P0067015 Elavl4 protein_coding protein_coding MGP_AJ_T0067016.1 MGP_AJ_G0028539.1 mouse_genomes_project 4 107023757 107071572 - Elavl4 protein_coding processed_transcript MGP_AJ_T0067017.1 MGP_AJ_G0028539.1 mouse_genomes_project 4 107024786 107084907 - MGP_AJ_P0067017 Elavl4 protein_coding protein_coding MGP_AJ_T0067018.1 MGP_AJ_G0028539.1 mouse_genomes_project 4 107049454 107088265 - MGP_AJ_P0067018 Elavl4 protein_coding protein_coding MGP_AJ_T0014783.1 MGP_AJ_G0012878.1 mouse_genomes_project 4 128798528 128798849 - processed_pseudogene processed_pseudogene MGP_AJ_T0014591.1 MGP_AJ_G0012686.1 mouse_genomes_project 4 67864100 67864571 + processed_pseudogene processed_pseudogene MGP_AJ_T0018112.1 MGP_AJ_G0015563.1 mouse_genomes_project 4 153014942 153038368 - 5830444B04Rik processed_transcript processed_transcript MGP_AJ_T0018113.1 MGP_AJ_G0015563.1 mouse_genomes_project 4 153025130 153031565 - 5830444B04Rik processed_transcript processed_transcript MGP_AJ_T0018114.1 MGP_AJ_G0015563.1 mouse_genomes_project 4 153025131 153038359 - 5830444B04Rik processed_transcript processed_transcript MGP_AJ_T0018115.1 MGP_AJ_G0015563.1 mouse_genomes_project 4 153026339 153031544 - 5830444B04Rik processed_transcript processed_transcript MGP_AJ_T0004471.1 MGP_AJ_G0003894.1 mouse_genomes_project 4 83313753 83315107 + Saxo1os antisense antisense MGP_AJ_T0067615.1 MGP_AJ_G0028672.1 mouse_genomes_project 4 117142255 117143504 + MGP_AJ_P0067615 Cited4 protein_coding protein_coding MGP_AJ_T0004518.1 MGP_AJ_G0003924.1 mouse_genomes_project 4 114300925 114303300 + Gm12841 antisense antisense MGP_AJ_T0014781.1 MGP_AJ_G0012876.1 mouse_genomes_project 4 128700065 128700532 - processed_pseudogene processed_pseudogene MGP_AJ_T0069420.1 MGP_AJ_G0029108.1 mouse_genomes_project 4 147043531 147111542 + MGP_AJ_P0069420 Clstn1 protein_coding protein_coding MGP_AJ_T0069421.1 MGP_AJ_G0029108.1 mouse_genomes_project 4 147043745 147111546 + MGP_AJ_P0069421 Clstn1 protein_coding protein_coding MGP_AJ_T0069422.1 MGP_AJ_G0029108.1 mouse_genomes_project 4 147044311 147088743 + Clstn1 protein_coding processed_transcript MGP_AJ_T0069423.1 MGP_AJ_G0029108.1 mouse_genomes_project 4 147088547 147093907 + Clstn1 protein_coding retained_intron MGP_AJ_T0004484.1 MGP_AJ_G0003899.1 mouse_genomes_project 4 95045329 95046782 + 0610025J13Rik antisense antisense MGP_AJ_T0004485.1 MGP_AJ_G0003899.1 mouse_genomes_project 4 95045379 95055747 + 0610025J13Rik antisense antisense MGP_AJ_T0004486.1 MGP_AJ_G0003899.1 mouse_genomes_project 4 95045379 95055747 + 0610025J13Rik antisense antisense MGP_AJ_T0068926.1 MGP_AJ_G0028972.1 mouse_genomes_project 4 135907640 136006261 + MGP_AJ_P0068926 Capzb protein_coding protein_coding MGP_AJ_T0068927.1 MGP_AJ_G0028972.1 mouse_genomes_project 4 135907655 135953723 + Capzb protein_coding retained_intron MGP_AJ_T0068928.1 MGP_AJ_G0028972.1 mouse_genomes_project 4 135907685 136006317 + Capzb protein_coding processed_transcript MGP_AJ_T0068929.1 MGP_AJ_G0028972.1 mouse_genomes_project 4 135907742 136006326 + MGP_AJ_P0068929 Capzb protein_coding protein_coding MGP_AJ_T0068930.1 MGP_AJ_G0028972.1 mouse_genomes_project 4 135908712 136005943 + MGP_AJ_P0068930 Capzb protein_coding protein_coding MGP_AJ_T0068931.1 MGP_AJ_G0028972.1 mouse_genomes_project 4 135908827 135953983 + Capzb protein_coding retained_intron MGP_AJ_T0068932.1 MGP_AJ_G0028972.1 mouse_genomes_project 4 135913983 135976649 + MGP_AJ_P0068932 Capzb protein_coding protein_coding MGP_AJ_T0068933.1 MGP_AJ_G0028972.1 mouse_genomes_project 4 135941512 136001592 + MGP_AJ_P0068933 Capzb protein_coding protein_coding MGP_AJ_T0068934.1 MGP_AJ_G0028972.1 mouse_genomes_project 4 136003448 136004318 + Capzb protein_coding processed_transcript MGP_AJ_T0068181.1 MGP_AJ_G0028802.1 mouse_genomes_project 4 126792119 126817691 + MGP_AJ_P0068181 Pef1 protein_coding protein_coding MGP_AJ_T0068182.1 MGP_AJ_G0028802.1 mouse_genomes_project 4 126797117 126817690 + MGP_AJ_P0068182 Pef1 protein_coding protein_coding MGP_AJ_T0064991.1 MGP_AJ_G0028078.1 mouse_genomes_project 4 29582210 29597424 - MGP_AJ_P0064991 Pm20d2 protein_coding protein_coding MGP_AJ_T0064992.1 MGP_AJ_G0028078.1 mouse_genomes_project 4 29589604 29597728 - MGP_AJ_P0064992 Pm20d2 protein_coding protein_coding MGP_AJ_T0014506.1 MGP_AJ_G0012601.1 mouse_genomes_project 4 34320265 34330096 - processed_pseudogene processed_pseudogene MGP_AJ_T0067303.1 MGP_AJ_G0028601.1 mouse_genomes_project 4 113398755 113409473 + MGP_AJ_P0067303 Hectd3 protein_coding protein_coding MGP_AJ_T0067304.1 MGP_AJ_G0028601.1 mouse_genomes_project 4 113402728 113404533 + Hectd3 protein_coding retained_intron MGP_AJ_T0067305.1 MGP_AJ_G0028601.1 mouse_genomes_project 4 113407048 113407644 + Hectd3 protein_coding retained_intron MGP_AJ_T0066381.1 MGP_AJ_G0028410.1 mouse_genomes_project 4 90113243 90114620 - MGP_AJ_P0066381 Tusc1 protein_coding protein_coding MGP_AJ_T0004594.1 MGP_AJ_G0003983.1 mouse_genomes_project 4 146781814 146783073 + Ube4bos3 antisense antisense MGP_AJ_T0014533.1 MGP_AJ_G0012628.1 mouse_genomes_project 4 43827494 43827629 + processed_pseudogene processed_pseudogene MGP_AJ_T0065039.1 MGP_AJ_G0028089.1 mouse_genomes_project 4 31174917 31188518 - MGP_AJ_P0065039 Gm136 protein_coding protein_coding MGP_AJ_T0065681.1 MGP_AJ_G0028222.1 mouse_genomes_project 4 43319556 43650854 - MGP_AJ_P0065681 Gabbr2 protein_coding protein_coding MGP_AJ_T0065682.1 MGP_AJ_G0028222.1 mouse_genomes_project 4 43321759 43345402 - Gabbr2 protein_coding processed_transcript MGP_AJ_T0065683.1 MGP_AJ_G0028222.1 mouse_genomes_project 4 43334462 43381408 - MGP_AJ_P0065683 Gabbr2 protein_coding protein_coding MGP_AJ_T0065684.1 MGP_AJ_G0028222.1 mouse_genomes_project 4 43455831 43517038 - Gabbr2 protein_coding processed_transcript MGP_AJ_T0014520.1 MGP_AJ_G0012615.1 mouse_genomes_project 4 37577945 37578279 - processed_pseudogene processed_pseudogene MGP_AJ_T0102616.1 MGP_AJ_G0040358.1 mouse_genomes_project 4 119270481 119275047 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0007987.1 MGP_AJ_G0006519.1 mouse_genomes_project 4 128593280 128594064 + Gm13063 lincRNA lincRNA MGP_AJ_T0018099.1 MGP_AJ_G0015555.1 mouse_genomes_project 4 128444752 128465226 - Gm12992 processed_transcript processed_transcript MGP_AJ_T0018100.1 MGP_AJ_G0015555.1 mouse_genomes_project 4 128457621 128460717 - Gm12992 processed_transcript processed_transcript MGP_AJ_T0014517.1 MGP_AJ_G0012612.1 mouse_genomes_project 4 36550566 36550984 - processed_pseudogene processed_pseudogene MGP_AJ_T0067741.1 MGP_AJ_G0028709.1 mouse_genomes_project 4 121243755 121247604 + MGP_AJ_P0067741 Pou3f1 protein_coding protein_coding MGP_AJ_T0004466.1 MGP_AJ_G0003889.1 mouse_genomes_project 4 68953332 68954014 + Gm11250 antisense antisense MGP_AJ_T0010610.1 MGP_AJ_G0008732.1 mouse_genomes_project 4 115583598 115583664 + Mir1957a miRNA miRNA MGP_AJ_T0069262.1 MGP_AJ_G0029078.1 mouse_genomes_project 4 145417409 145418767 + MGP_AJ_P0069262 Nppa protein_coding protein_coding MGP_AJ_T0010647.1 MGP_AJ_G0008769.1 mouse_genomes_project 4 146993596 146993656 + Mir5616 miRNA miRNA MGP_AJ_T0068367.1 MGP_AJ_G0028840.1 mouse_genomes_project 4 129397909 129414437 - MGP_AJ_P0068367 Ppp1r8 protein_coding protein_coding MGP_AJ_T0068368.1 MGP_AJ_G0028840.1 mouse_genomes_project 4 129398807 129414391 - MGP_AJ_P0068368 Ppp1r8 protein_coding protein_coding MGP_AJ_T0068369.1 MGP_AJ_G0028840.1 mouse_genomes_project 4 129399948 129403884 - Ppp1r8 protein_coding processed_transcript MGP_AJ_T0068370.1 MGP_AJ_G0028840.1 mouse_genomes_project 4 129401356 129414392 - Ppp1r8 protein_coding processed_transcript MGP_AJ_T0068371.1 MGP_AJ_G0028840.1 mouse_genomes_project 4 129405599 129414402 - Ppp1r8 protein_coding processed_transcript MGP_AJ_T0065747.1 MGP_AJ_G0028239.1 mouse_genomes_project 4 46076715 46106521 - MGP_AJ_P0065747 protein_coding protein_coding MGP_AJ_T0065748.1 MGP_AJ_G0028239.1 mouse_genomes_project 4 46081734 46156713 - protein_coding processed_transcript MGP_AJ_T0001406.1 MGP_AJ_G0001329.1 mouse_genomes_project 4 4933626 4942076 - TEC TEC MGP_AJ_T0064961.1 MGP_AJ_G0028070.1 mouse_genomes_project 4 29062376 29180557 + MGP_AJ_P0064961 Mdn1 protein_coding protein_coding MGP_AJ_T0064962.1 MGP_AJ_G0028070.1 mouse_genomes_project 4 29062376 29180567 + MGP_AJ_P0064962 Mdn1 protein_coding protein_coding MGP_AJ_T0064963.1 MGP_AJ_G0028070.1 mouse_genomes_project 4 29062440 29069431 + Mdn1 protein_coding processed_transcript MGP_AJ_T0064964.1 MGP_AJ_G0028070.1 mouse_genomes_project 4 29076821 29084874 + Mdn1 protein_coding processed_transcript MGP_AJ_T0064965.1 MGP_AJ_G0028070.1 mouse_genomes_project 4 29100804 29101885 + Mdn1 protein_coding processed_transcript MGP_AJ_T0064966.1 MGP_AJ_G0028070.1 mouse_genomes_project 4 29109865 29180548 + Mdn1 protein_coding processed_transcript MGP_AJ_T0064967.1 MGP_AJ_G0028070.1 mouse_genomes_project 4 29128123 29136668 + Mdn1 protein_coding processed_transcript MGP_AJ_T0064968.1 MGP_AJ_G0028070.1 mouse_genomes_project 4 29131087 29133443 + Mdn1 protein_coding processed_transcript MGP_AJ_T0064969.1 MGP_AJ_G0028070.1 mouse_genomes_project 4 29155725 29159499 + Mdn1 protein_coding processed_transcript MGP_AJ_T0064970.1 MGP_AJ_G0028070.1 mouse_genomes_project 4 29155725 29156806 + Mdn1 protein_coding processed_transcript MGP_AJ_T0064971.1 MGP_AJ_G0028070.1 mouse_genomes_project 4 29168431 29170566 + Mdn1 protein_coding processed_transcript MGP_AJ_T0068749.1 MGP_AJ_G0028927.1 mouse_genomes_project 4 133106859 133186969 + MGP_AJ_P0068749 Luzp1 protein_coding protein_coding MGP_AJ_T0068750.1 MGP_AJ_G0028927.1 mouse_genomes_project 4 133106859 133186965 + MGP_AJ_P0068750 Luzp1 protein_coding protein_coding MGP_AJ_T0068751.1 MGP_AJ_G0028927.1 mouse_genomes_project 4 133106902 133158726 + Luzp1 protein_coding retained_intron MGP_AJ_T0068752.1 MGP_AJ_G0028927.1 mouse_genomes_project 4 133106949 133178317 + MGP_AJ_P0068752 Luzp1 protein_coding protein_coding MGP_AJ_T0068753.1 MGP_AJ_G0028927.1 mouse_genomes_project 4 133158409 133184041 + MGP_AJ_P0068753 Luzp1 protein_coding protein_coding MGP_AJ_T0068754.1 MGP_AJ_G0028927.1 mouse_genomes_project 4 133178003 133186968 + MGP_AJ_P0068754 Luzp1 protein_coding protein_coding MGP_AJ_T0068755.1 MGP_AJ_G0028927.1 mouse_genomes_project 4 133182911 133192426 + MGP_AJ_P0068755 Luzp1 protein_coding protein_coding MGP_AJ_T0068013.1 MGP_AJ_G0028774.1 mouse_genomes_project 4 125821647 125863230 - MGP_AJ_P0068013 S100pbp protein_coding protein_coding MGP_AJ_T0068014.1 MGP_AJ_G0028774.1 mouse_genomes_project 4 125821647 125863193 - MGP_AJ_P0068014 S100pbp protein_coding protein_coding MGP_AJ_T0068015.1 MGP_AJ_G0028774.1 mouse_genomes_project 4 125821647 125863378 - MGP_AJ_P0068015 S100pbp protein_coding protein_coding MGP_AJ_T0068016.1 MGP_AJ_G0028774.1 mouse_genomes_project 4 125823014 125856181 - MGP_AJ_P0068016 S100pbp protein_coding protein_coding MGP_AJ_T0068017.1 MGP_AJ_G0028774.1 mouse_genomes_project 4 125824189 125863228 - S100pbp protein_coding processed_transcript MGP_AJ_T0068018.1 MGP_AJ_G0028774.1 mouse_genomes_project 4 125824468 125863228 - S100pbp protein_coding retained_intron MGP_AJ_T0068019.1 MGP_AJ_G0028774.1 mouse_genomes_project 4 125824468 125854073 - S100pbp protein_coding retained_intron MGP_AJ_T0068020.1 MGP_AJ_G0028774.1 mouse_genomes_project 4 125824674 125863163 - MGP_AJ_P0068020 S100pbp protein_coding protein_coding MGP_AJ_T0068021.1 MGP_AJ_G0028774.1 mouse_genomes_project 4 125824674 125863260 - MGP_AJ_P0068021 S100pbp protein_coding protein_coding MGP_AJ_T0068022.1 MGP_AJ_G0028774.1 mouse_genomes_project 4 125836737 125863268 - S100pbp protein_coding processed_transcript MGP_AJ_T0068023.1 MGP_AJ_G0028774.1 mouse_genomes_project 4 125841963 125851949 - S100pbp protein_coding processed_transcript MGP_AJ_T0068024.1 MGP_AJ_G0028774.1 mouse_genomes_project 4 125850808 125863277 - MGP_AJ_P0068024 S100pbp protein_coding protein_coding MGP_AJ_T0068025.1 MGP_AJ_G0028774.1 mouse_genomes_project 4 125855392 125863321 - S100pbp protein_coding processed_transcript MGP_AJ_T0068026.1 MGP_AJ_G0028774.1 mouse_genomes_project 4 125855450 125863149 - S100pbp protein_coding processed_transcript MGP_AJ_T0004468.1 MGP_AJ_G0003891.1 mouse_genomes_project 4 79241628 79281739 + Gm11266 antisense antisense MGP_AJ_T0014605.1 MGP_AJ_G0012700.1 mouse_genomes_project 4 71893458 71893773 + processed_pseudogene processed_pseudogene MGP_AJ_T0065131.1 MGP_AJ_G0028112.1 mouse_genomes_project 4 37538214 37543677 - MGP_AJ_P0065131 Aqp3 protein_coding protein_coding MGP_AJ_T0065132.1 MGP_AJ_G0028112.1 mouse_genomes_project 4 37539275 37539942 - Aqp3 protein_coding retained_intron MGP_AJ_T0099945.1 MGP_AJ_G0037911.1 mouse_genomes_project 4 105809683 105809788 - Gm23589 snRNA snRNA MGP_AJ_T0064616.1 MGP_AJ_G0027986.1 mouse_genomes_project 4 578124 592340 - MGP_AJ_P0064616 Sdr16c5 protein_coding protein_coding MGP_AJ_T0064617.1 MGP_AJ_G0027986.1 mouse_genomes_project 4 585009 589298 - Sdr16c5 protein_coding processed_transcript MGP_AJ_T0007930.1 MGP_AJ_G0006479.1 mouse_genomes_project 4 104568761 104574286 + Gm12907 lincRNA lincRNA MGP_AJ_T0007905.1 MGP_AJ_G0006461.1 mouse_genomes_project 4 92137464 92138277 - Gm29064 lincRNA lincRNA MGP_AJ_T0069676.1 MGP_AJ_G0029153.1 mouse_genomes_project 4 151614466 151624260 + MGP_AJ_P0069676 Lrrc47 protein_coding protein_coding MGP_AJ_T0069677.1 MGP_AJ_G0029153.1 mouse_genomes_project 4 151614538 151624259 + MGP_AJ_P0069677 Lrrc47 protein_coding protein_coding MGP_AJ_T0069678.1 MGP_AJ_G0029153.1 mouse_genomes_project 4 151620153 151621817 + Lrrc47 protein_coding retained_intron MGP_AJ_T0069679.1 MGP_AJ_G0029153.1 mouse_genomes_project 4 151621699 151623638 + MGP_AJ_P0069679 Lrrc47 protein_coding protein_coding MGP_AJ_T0069680.1 MGP_AJ_G0029153.1 mouse_genomes_project 4 151622385 151623414 + MGP_AJ_P0069680 Lrrc47 protein_coding protein_coding MGP_AJ_T0068724.1 MGP_AJ_G0028920.1 mouse_genomes_project 4 132805125 132828786 + MGP_AJ_P0068724 E2f2 protein_coding protein_coding MGP_AJ_T0068725.1 MGP_AJ_G0028920.1 mouse_genomes_project 4 132813513 132819536 + E2f2 protein_coding processed_transcript MGP_AJ_T0102614.1 MGP_AJ_G0040356.1 mouse_genomes_project 4 119178961 119187034 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0067960.1 MGP_AJ_G0028763.1 mouse_genomes_project 4 125276563 125279740 - MGP_AJ_P0067960 Tlr12 protein_coding protein_coding MGP_AJ_T0067961.1 MGP_AJ_G0028763.1 mouse_genomes_project 4 125278622 125279713 - Tlr12 protein_coding processed_transcript MGP_AJ_T0011563.1 MGP_AJ_G0009685.1 mouse_genomes_project 4 42790889 42791156 + Gm23250 misc_RNA misc_RNA MGP_AJ_T0101186.1 MGP_AJ_G0039152.1 mouse_genomes_project 4 3171915 3172047 - Gm22473 snoRNA snoRNA MGP_AJ_T0102577.1 MGP_AJ_G0040319.1 mouse_genomes_project 4 240904 275265 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0099933.1 MGP_AJ_G0037899.1 mouse_genomes_project 4 93618821 93618884 + Gm27579 snRNA snRNA MGP_AJ_T0102590.1 MGP_AJ_G0040332.1 mouse_genomes_project 4 85398899 85400291 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0066332.1 MGP_AJ_G0028382.1 mouse_genomes_project 4 85310571 85311321 - MGP_AJ_P0066332 Ifnb1 protein_coding protein_coding MGP_AJ_T0066198.1 MGP_AJ_G0028362.1 mouse_genomes_project 4 79622647 79775205 - MGP_AJ_P0066198 Frem1 protein_coding protein_coding MGP_AJ_T0066199.1 MGP_AJ_G0028362.1 mouse_genomes_project 4 79622654 79744352 - MGP_AJ_P0066199 Frem1 protein_coding protein_coding MGP_AJ_T0066200.1 MGP_AJ_G0028362.1 mouse_genomes_project 4 79622654 79775377 - MGP_AJ_P0066200 Frem1 protein_coding protein_coding MGP_AJ_T0066201.1 MGP_AJ_G0028362.1 mouse_genomes_project 4 79625291 79639696 - Frem1 protein_coding processed_transcript MGP_AJ_T0066202.1 MGP_AJ_G0028362.1 mouse_genomes_project 4 79640894 79650051 - Frem1 protein_coding retained_intron MGP_AJ_T0066203.1 MGP_AJ_G0028362.1 mouse_genomes_project 4 79660320 79665098 - Frem1 protein_coding retained_intron MGP_AJ_T0066204.1 MGP_AJ_G0028362.1 mouse_genomes_project 4 79662641 79694879 - MGP_AJ_P0066204 Frem1 protein_coding protein_coding MGP_AJ_T0066205.1 MGP_AJ_G0028362.1 mouse_genomes_project 4 79715415 79775377 - Frem1 protein_coding processed_transcript MGP_AJ_T0011578.1 MGP_AJ_G0009700.1 mouse_genomes_project 4 105973069 105973343 - Gm23743 misc_RNA misc_RNA MGP_AJ_T0014465.1 MGP_AJ_G0012560.1 mouse_genomes_project 4 22966787 22967004 - processed_pseudogene processed_pseudogene MGP_AJ_T0065844.1 MGP_AJ_G0028272.1 mouse_genomes_project 4 53443004 53445285 + Fam206a protein_coding retained_intron MGP_AJ_T0065845.1 MGP_AJ_G0028272.1 mouse_genomes_project 4 53443008 53450261 + MGP_AJ_P0065845 Fam206a protein_coding protein_coding MGP_AJ_T0065846.1 MGP_AJ_G0028272.1 mouse_genomes_project 4 53443011 53450261 + MGP_AJ_P0065846 Fam206a protein_coding nonsense_mediated_decay MGP_AJ_T0065847.1 MGP_AJ_G0028272.1 mouse_genomes_project 4 53443277 53446607 + MGP_AJ_P0065847 Fam206a protein_coding nonsense_mediated_decay MGP_AJ_T0064622.1 MGP_AJ_G0027989.1 mouse_genomes_project 4 1340982 1371873 - MGP_AJ_P0064622 Impad1 protein_coding protein_coding MGP_AJ_T0065820.1 MGP_AJ_G0028264.1 mouse_genomes_project 4 50457469 50496817 + MGP_AJ_P0065820 Tmem38b protein_coding protein_coding MGP_AJ_T0065821.1 MGP_AJ_G0028264.1 mouse_genomes_project 4 50457479 50465549 + Tmem38b protein_coding processed_transcript MGP_AJ_T0065822.1 MGP_AJ_G0028264.1 mouse_genomes_project 4 50457481 50481954 + Tmem38b protein_coding processed_transcript MGP_AJ_T0065823.1 MGP_AJ_G0028264.1 mouse_genomes_project 4 50474579 50489511 + MGP_AJ_P0065823 Tmem38b protein_coding protein_coding MGP_AJ_T0067469.1 MGP_AJ_G0028631.1 mouse_genomes_project 4 114893092 114912364 - MGP_AJ_P0067469 protein_coding unknown_likely_coding MGP_AJ_T0067470.1 MGP_AJ_G0028631.1 mouse_genomes_project 4 114893101 114911641 - MGP_AJ_P0067470 protein_coding protein_coding MGP_AJ_T0067471.1 MGP_AJ_G0028631.1 mouse_genomes_project 4 114899955 114911679 - protein_coding processed_transcript MGP_AJ_T0067124.1 MGP_AJ_G0028567.1 mouse_genomes_project 4 112128365 112165027 + MGP_AJ_P0067124 Efcab14 protein_coding protein_coding MGP_AJ_T0067125.1 MGP_AJ_G0028567.1 mouse_genomes_project 4 112128400 112148912 + Efcab14 protein_coding processed_transcript MGP_AJ_T0067126.1 MGP_AJ_G0028567.1 mouse_genomes_project 4 112128400 112159682 + MGP_AJ_P0067126 Efcab14 protein_coding protein_coding MGP_AJ_T0067127.1 MGP_AJ_G0028567.1 mouse_genomes_project 4 112128401 112144554 + Efcab14 protein_coding processed_transcript MGP_AJ_T0067128.1 MGP_AJ_G0028567.1 mouse_genomes_project 4 112128694 112167919 + MGP_AJ_P0067128 Efcab14 protein_coding protein_coding MGP_AJ_T0067129.1 MGP_AJ_G0028567.1 mouse_genomes_project 4 112129064 112164670 + MGP_AJ_P0067129 Efcab14 protein_coding protein_coding MGP_AJ_T0067130.1 MGP_AJ_G0028567.1 mouse_genomes_project 4 112157059 112165780 + Efcab14 protein_coding processed_transcript MGP_AJ_T0064855.1 MGP_AJ_G0028048.1 mouse_genomes_project 4 18186232 18208565 + MGP_AJ_P0064855 Ccnc protein_coding protein_coding MGP_AJ_T0064856.1 MGP_AJ_G0028048.1 mouse_genomes_project 4 18186257 18208565 + MGP_AJ_P0064856 Ccnc protein_coding protein_coding MGP_AJ_T0064857.1 MGP_AJ_G0028048.1 mouse_genomes_project 4 18186257 18217943 + MGP_AJ_P0064857 Ccnc protein_coding protein_coding MGP_AJ_T0064858.1 MGP_AJ_G0028048.1 mouse_genomes_project 4 18186272 18196544 + Ccnc protein_coding processed_transcript MGP_AJ_T0064859.1 MGP_AJ_G0028048.1 mouse_genomes_project 4 18186284 18205981 + Ccnc protein_coding processed_transcript MGP_AJ_T0064860.1 MGP_AJ_G0028048.1 mouse_genomes_project 4 18186286 18205981 + MGP_AJ_P0064860 Ccnc protein_coding protein_coding MGP_AJ_T0064861.1 MGP_AJ_G0028048.1 mouse_genomes_project 4 18186289 18190604 + Ccnc protein_coding processed_transcript MGP_AJ_T0064862.1 MGP_AJ_G0028048.1 mouse_genomes_project 4 18186298 18206573 + Ccnc protein_coding processed_transcript MGP_AJ_T0014450.1 MGP_AJ_G0012545.1 mouse_genomes_project 4 19015670 19016242 - processed_pseudogene processed_pseudogene MGP_AJ_T0004446.1 MGP_AJ_G0003871.1 mouse_genomes_project 4 40274545 40285454 - Gm12473 antisense antisense MGP_AJ_T0014711.1 MGP_AJ_G0012806.1 mouse_genomes_project 4 107292350 107292618 + processed_pseudogene processed_pseudogene MGP_AJ_T0004462.1 MGP_AJ_G0003885.1 mouse_genomes_project 4 58829415 58831590 + Gm12909 antisense antisense MGP_AJ_T0064722.1 MGP_AJ_G0028007.1 mouse_genomes_project 4 7734548 7789993 - MGP_AJ_P0064722 Ints8 protein_coding protein_coding MGP_AJ_T0064723.1 MGP_AJ_G0028007.1 mouse_genomes_project 4 7739486 7749007 - Ints8 protein_coding processed_transcript MGP_AJ_T0064724.1 MGP_AJ_G0028007.1 mouse_genomes_project 4 7739757 7771374 - Ints8 protein_coding processed_transcript MGP_AJ_T0064725.1 MGP_AJ_G0028007.1 mouse_genomes_project 4 7739759 7789993 - MGP_AJ_P0064725 Ints8 protein_coding protein_coding MGP_AJ_T0064726.1 MGP_AJ_G0028007.1 mouse_genomes_project 4 7739759 7789993 - MGP_AJ_P0064726 Ints8 protein_coding protein_coding MGP_AJ_T0064727.1 MGP_AJ_G0028007.1 mouse_genomes_project 4 7739760 7749574 - Ints8 protein_coding processed_transcript MGP_AJ_T0064728.1 MGP_AJ_G0028007.1 mouse_genomes_project 4 7744131 7755722 - Ints8 protein_coding processed_transcript MGP_AJ_T0064729.1 MGP_AJ_G0028007.1 mouse_genomes_project 4 7768377 7771783 - Ints8 protein_coding processed_transcript MGP_AJ_T0014421.1 MGP_AJ_G0012516.1 mouse_genomes_project 4 11702311 11702638 + processed_pseudogene processed_pseudogene MGP_AJ_T0014712.1 MGP_AJ_G0012807.1 mouse_genomes_project 4 108056880 108057879 + processed_pseudogene processed_pseudogene MGP_AJ_T0007962.1 MGP_AJ_G0006501.1 mouse_genomes_project 4 124192103 124193367 + 1700080G11Rik lincRNA lincRNA MGP_AJ_T0067789.1 MGP_AJ_G0028722.1 mouse_genomes_project 4 121670183 121677553 + MGP_AJ_P0067789 Snip1 protein_coding protein_coding MGP_AJ_T0067790.1 MGP_AJ_G0028722.1 mouse_genomes_project 4 121670213 121674812 + Snip1 protein_coding processed_transcript MGP_AJ_T0067174.1 MGP_AJ_G0028577.1 mouse_genomes_project 4 112460456 112468371 - Uqcrh protein_coding processed_transcript MGP_AJ_T0067175.1 MGP_AJ_G0028577.1 mouse_genomes_project 4 112460456 112468408 - MGP_AJ_P0067175 Uqcrh protein_coding protein_coding MGP_AJ_T0067176.1 MGP_AJ_G0028577.1 mouse_genomes_project 4 112460456 112468368 - MGP_AJ_P0067176 Uqcrh protein_coding protein_coding MGP_AJ_T0067177.1 MGP_AJ_G0028577.1 mouse_genomes_project 4 112460457 112463570 - Uqcrh protein_coding retained_intron MGP_AJ_T0067178.1 MGP_AJ_G0028577.1 mouse_genomes_project 4 112463592 112468396 - Uqcrh protein_coding retained_intron MGP_AJ_T0008031.1 MGP_AJ_G0006553.1 mouse_genomes_project 4 147526028 147534096 + Gm13067 lincRNA lincRNA MGP_AJ_T0102595.1 MGP_AJ_G0040337.1 mouse_genomes_project 4 92878697 92878876 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0004546.1 MGP_AJ_G0003946.1 mouse_genomes_project 4 127346145 127346855 - Gm12970 antisense antisense MGP_AJ_T0068666.1 MGP_AJ_G0028907.1 mouse_genomes_project 4 132342542 132366496 + MGP_AJ_P0068666 Il22ra1 protein_coding protein_coding MGP_AJ_T0007877.1 MGP_AJ_G0006437.1 mouse_genomes_project 4 64817299 64931402 + lincRNA lincRNA MGP_AJ_T0010652.1 MGP_AJ_G0008774.1 mouse_genomes_project 4 153665309 153665392 - Mir429 miRNA miRNA MGP_AJ_T0007886.1 MGP_AJ_G0006445.1 mouse_genomes_project 4 80086598 80099614 + lincRNA lincRNA MGP_AJ_T0014702.1 MGP_AJ_G0012797.1 mouse_genomes_project 4 105113497 105114293 - processed_pseudogene processed_pseudogene MGP_AJ_T0067636.1 MGP_AJ_G0028677.1 mouse_genomes_project 4 117406463 117422295 - MGP_AJ_P0067636 Zfp69 protein_coding protein_coding MGP_AJ_T0067637.1 MGP_AJ_G0028677.1 mouse_genomes_project 4 117406559 117420054 - MGP_AJ_P0067637 Zfp69 protein_coding protein_coding MGP_AJ_T0067638.1 MGP_AJ_G0028677.1 mouse_genomes_project 4 117406679 117422167 - MGP_AJ_P0067638 Zfp69 protein_coding protein_coding MGP_AJ_T0067639.1 MGP_AJ_G0028677.1 mouse_genomes_project 4 117407633 117411015 - Zfp69 protein_coding retained_intron MGP_AJ_T0004531.1 MGP_AJ_G0003935.1 mouse_genomes_project 4 120471794 120484600 - Gm12905 antisense antisense MGP_AJ_T0004532.1 MGP_AJ_G0003935.1 mouse_genomes_project 4 120471962 120472241 - Gm12905 antisense antisense MGP_AJ_T0014806.1 MGP_AJ_G0012901.1 mouse_genomes_project 4 135127389 135127568 + processed_pseudogene processed_pseudogene MGP_AJ_T0014577.1 MGP_AJ_G0012672.1 mouse_genomes_project 4 59700175 59700430 + processed_pseudogene processed_pseudogene MGP_AJ_T0101254.1 MGP_AJ_G0039220.1 mouse_genomes_project 4 127284429 127284502 + Snord85 snoRNA snoRNA MGP_AJ_T0101261.1 MGP_AJ_G0039227.1 mouse_genomes_project 4 128865838 128865967 + Snora44 snoRNA snoRNA MGP_AJ_T0014720.1 MGP_AJ_G0012815.1 mouse_genomes_project 4 111849001 111849478 + processed_pseudogene processed_pseudogene MGP_AJ_T0014751.1 MGP_AJ_G0012846.1 mouse_genomes_project 4 117852423 117852748 + processed_pseudogene processed_pseudogene MGP_AJ_T0014825.1 MGP_AJ_G0012920.1 mouse_genomes_project 4 145300326 145300647 + processed_pseudogene processed_pseudogene MGP_AJ_T0014679.1 MGP_AJ_G0012774.1 mouse_genomes_project 4 97956582 97956754 - processed_pseudogene processed_pseudogene MGP_AJ_T0065993.1 MGP_AJ_G0028313.1 mouse_genomes_project 4 59187105 59194788 - MGP_AJ_P0065993 Rnf183 protein_coding protein_coding MGP_AJ_T0065994.1 MGP_AJ_G0028313.1 mouse_genomes_project 4 59187107 59194262 - MGP_AJ_P0065994 Rnf183 protein_coding protein_coding MGP_AJ_T0065995.1 MGP_AJ_G0028313.1 mouse_genomes_project 4 59187552 59188125 - MGP_AJ_P0065995 Rnf183 protein_coding protein_coding MGP_AJ_T0067654.1 MGP_AJ_G0028685.1 mouse_genomes_project 4 119227885 119243727 + MGP_AJ_P0067654 9530002B09Rik protein_coding protein_coding MGP_AJ_T0065802.1 MGP_AJ_G0028259.1 mouse_genomes_project 4 49666453 49790031 - MGP_AJ_P0065802 Abca1 protein_coding protein_coding MGP_AJ_T0065803.1 MGP_AJ_G0028259.1 mouse_genomes_project 4 49671154 49676551 - Abca1 protein_coding processed_transcript MGP_AJ_T0010588.1 MGP_AJ_G0008710.1 mouse_genomes_project 4 42173278 42173346 - Gm22518 miRNA miRNA MGP_AJ_T0066261.1 MGP_AJ_G0028369.1 mouse_genomes_project 4 81932315 82125288 + MGP_AJ_P0066261 Sh3gl2 protein_coding protein_coding MGP_AJ_T0066262.1 MGP_AJ_G0028369.1 mouse_genomes_project 4 81932630 82114913 + MGP_AJ_P0066262 Sh3gl2 protein_coding protein_coding MGP_AJ_T0066263.1 MGP_AJ_G0028369.1 mouse_genomes_project 4 81932658 82358336 + MGP_AJ_P0066263 Sh3gl2 protein_coding protein_coding MGP_AJ_T0066264.1 MGP_AJ_G0028369.1 mouse_genomes_project 4 81932724 82103177 + MGP_AJ_P0066264 Sh3gl2 protein_coding protein_coding MGP_AJ_T0066265.1 MGP_AJ_G0028369.1 mouse_genomes_project 4 82101822 82113109 + MGP_AJ_P0066265 Sh3gl2 protein_coding protein_coding MGP_AJ_T0001411.1 MGP_AJ_G0001334.1 mouse_genomes_project 4 41329044 41330612 + TEC TEC MGP_AJ_T0069203.1 MGP_AJ_G0029055.1 mouse_genomes_project 4 141426491 141445513 + MGP_AJ_P0069203 protein_coding protein_coding MGP_AJ_T0010649.1 MGP_AJ_G0008771.1 mouse_genomes_project 4 147545772 147545874 + Mir34a miRNA miRNA MGP_AJ_T0007902.1 MGP_AJ_G0006459.1 mouse_genomes_project 4 91818702 91821040 - 4930551L18Rik lincRNA lincRNA MGP_AJ_T0069846.1 MGP_AJ_G0029181.1 mouse_genomes_project 4 153182145 153210646 + MGP_AJ_P0069846 Nadk protein_coding protein_coding MGP_AJ_T0069847.1 MGP_AJ_G0029181.1 mouse_genomes_project 4 153183483 153210650 + MGP_AJ_P0069847 Nadk protein_coding protein_coding MGP_AJ_T0069848.1 MGP_AJ_G0029181.1 mouse_genomes_project 4 153183609 153196855 + Nadk protein_coding processed_transcript MGP_AJ_T0069849.1 MGP_AJ_G0029181.1 mouse_genomes_project 4 153183625 153196849 + MGP_AJ_P0069849 Nadk protein_coding protein_coding MGP_AJ_T0069850.1 MGP_AJ_G0029181.1 mouse_genomes_project 4 153183691 153199145 + MGP_AJ_P0069850 Nadk protein_coding protein_coding MGP_AJ_T0069851.1 MGP_AJ_G0029181.1 mouse_genomes_project 4 153183855 153199099 + MGP_AJ_P0069851 Nadk protein_coding protein_coding MGP_AJ_T0069852.1 MGP_AJ_G0029181.1 mouse_genomes_project 4 153202143 153210650 + MGP_AJ_P0069852 Nadk protein_coding protein_coding MGP_AJ_T0069853.1 MGP_AJ_G0029181.1 mouse_genomes_project 4 153206425 153209269 + Nadk protein_coding processed_transcript MGP_AJ_T0004419.1 MGP_AJ_G0003850.1 mouse_genomes_project 4 3219618 3235607 + Gm11802 antisense antisense MGP_AJ_T0064789.1 MGP_AJ_G0028023.1 mouse_genomes_project 4 10313314 10465684 + MGP_AJ_P0064789 Runx1t1 protein_coding protein_coding MGP_AJ_T0064790.1 MGP_AJ_G0028023.1 mouse_genomes_project 4 10321287 10414365 + Runx1t1 protein_coding processed_transcript MGP_AJ_T0064791.1 MGP_AJ_G0028023.1 mouse_genomes_project 4 10321287 10465659 + MGP_AJ_P0064791 Runx1t1 protein_coding protein_coding MGP_AJ_T0064792.1 MGP_AJ_G0028023.1 mouse_genomes_project 4 10341495 10462280 + MGP_AJ_P0064792 Runx1t1 protein_coding protein_coding MGP_AJ_T0064793.1 MGP_AJ_G0028023.1 mouse_genomes_project 4 10354954 10463091 + MGP_AJ_P0064793 Runx1t1 protein_coding protein_coding MGP_AJ_T0064794.1 MGP_AJ_G0028023.1 mouse_genomes_project 4 10461176 10461919 + Runx1t1 protein_coding processed_transcript MGP_AJ_T0008028.1 MGP_AJ_G0006550.1 mouse_genomes_project 4 146155662 146158573 + Gm13203 lincRNA lincRNA MGP_AJ_T0067826.1 MGP_AJ_G0028732.1 mouse_genomes_project 4 122773608 122786878 - Sh3d21 protein_coding processed_transcript MGP_AJ_T0067827.1 MGP_AJ_G0028732.1 mouse_genomes_project 4 122773608 122786839 - MGP_AJ_P0067827 Sh3d21 protein_coding protein_coding MGP_AJ_T0067828.1 MGP_AJ_G0028732.1 mouse_genomes_project 4 122773608 122787704 - MGP_AJ_P0067828 Sh3d21 protein_coding protein_coding MGP_AJ_T0067829.1 MGP_AJ_G0028732.1 mouse_genomes_project 4 122773614 122786814 - Sh3d21 protein_coding processed_transcript MGP_AJ_T0067830.1 MGP_AJ_G0028732.1 mouse_genomes_project 4 122774564 122786869 - Sh3d21 protein_coding processed_transcript MGP_AJ_T0067388.1 MGP_AJ_G0028617.1 mouse_genomes_project 4 114283826 114289535 - MGP_AJ_P0067388 Ccdc24 protein_coding protein_coding MGP_AJ_T0067389.1 MGP_AJ_G0028617.1 mouse_genomes_project 4 114284955 114286274 - Ccdc24 protein_coding processed_transcript MGP_AJ_T0067390.1 MGP_AJ_G0028617.1 mouse_genomes_project 4 114286048 114288601 - Ccdc24 protein_coding retained_intron MGP_AJ_T0067392.1 MGP_AJ_G0028617.1 mouse_genomes_project 4 114286560 114289858 - MGP_AJ_P0067392 Ccdc24 protein_coding protein_coding MGP_AJ_T0067393.1 MGP_AJ_G0028617.1 mouse_genomes_project 4 114286809 114288407 - MGP_AJ_P0067393 Ccdc24 protein_coding protein_coding MGP_AJ_T0067394.1 MGP_AJ_G0028617.1 mouse_genomes_project 4 114286924 114289824 - MGP_AJ_P0067394 Ccdc24 protein_coding protein_coding MGP_AJ_T0067395.1 MGP_AJ_G0028617.1 mouse_genomes_project 4 114287065 114288635 - Ccdc24 protein_coding processed_transcript MGP_AJ_T0067396.1 MGP_AJ_G0028617.1 mouse_genomes_project 4 114287443 114289861 - MGP_AJ_P0067396 Ccdc24 protein_coding nonsense_mediated_decay MGP_AJ_T0067397.1 MGP_AJ_G0028617.1 mouse_genomes_project 4 114287839 114289824 - MGP_AJ_P0067397 Ccdc24 protein_coding protein_coding MGP_AJ_T0101185.1 MGP_AJ_G0039151.1 mouse_genomes_project 4 2232230 2232356 - Gm24337 snoRNA snoRNA MGP_AJ_T0065394.1 MGP_AJ_G0028163.1 mouse_genomes_project 4 40124393 40126040 - MGP_AJ_P0065394 Sit1 protein_coding protein_coding MGP_AJ_T0065395.1 MGP_AJ_G0028163.1 mouse_genomes_project 4 40124499 40125528 - Sit1 protein_coding processed_transcript MGP_AJ_T0067761.1 MGP_AJ_G0028714.1 mouse_genomes_project 4 121450432 121451683 - protein_coding retained_intron MGP_AJ_T0067762.1 MGP_AJ_G0028714.1 mouse_genomes_project 4 121450837 121452162 - MGP_AJ_P0067762 protein_coding protein_coding MGP_AJ_T0067763.1 MGP_AJ_G0028714.1 mouse_genomes_project 4 121450837 121452083 - MGP_AJ_P0067763 protein_coding protein_coding MGP_AJ_T0067764.1 MGP_AJ_G0028714.1 mouse_genomes_project 4 121450838 121452014 - MGP_AJ_P0067764 protein_coding protein_coding MGP_AJ_T0067765.1 MGP_AJ_G0028714.1 mouse_genomes_project 4 121450842 121452560 - MGP_AJ_P0067765 protein_coding protein_coding MGP_AJ_T0067766.1 MGP_AJ_G0028714.1 mouse_genomes_project 4 121450898 121451826 - MGP_AJ_P0067766 protein_coding protein_coding MGP_AJ_T0101219.1 MGP_AJ_G0039185.1 mouse_genomes_project 4 59569843 59569976 + Gm24117 snoRNA snoRNA MGP_AJ_T0068895.1 MGP_AJ_G0028961.1 mouse_genomes_project 4 135458656 135465750 - MGP_AJ_P0068895 Pla2g2f protein_coding protein_coding MGP_AJ_T0014696.1 MGP_AJ_G0012791.1 mouse_genomes_project 4 103054845 103055110 + processed_pseudogene processed_pseudogene MGP_AJ_T0069495.1 MGP_AJ_G0029122.1 mouse_genomes_project 4 148403059 148421373 - MGP_AJ_P0069495 Park7 protein_coding protein_coding MGP_AJ_T0069496.1 MGP_AJ_G0029122.1 mouse_genomes_project 4 148403059 148416917 - MGP_AJ_P0069496 Park7 protein_coding protein_coding MGP_AJ_T0069497.1 MGP_AJ_G0029122.1 mouse_genomes_project 4 148403071 148416617 - MGP_AJ_P0069497 Park7 protein_coding protein_coding MGP_AJ_T0069498.1 MGP_AJ_G0029122.1 mouse_genomes_project 4 148403162 148414160 - MGP_AJ_P0069498 Park7 protein_coding protein_coding MGP_AJ_T0069499.1 MGP_AJ_G0029122.1 mouse_genomes_project 4 148403165 148416642 - MGP_AJ_P0069499 Park7 protein_coding protein_coding MGP_AJ_T0069500.1 MGP_AJ_G0029122.1 mouse_genomes_project 4 148403310 148407762 - Park7 protein_coding processed_transcript MGP_AJ_T0069501.1 MGP_AJ_G0029122.1 mouse_genomes_project 4 148406936 148416474 - MGP_AJ_P0069501 Park7 protein_coding protein_coding MGP_AJ_T0069502.1 MGP_AJ_G0029122.1 mouse_genomes_project 4 148409485 148416819 - Park7 protein_coding retained_intron MGP_AJ_T0069503.1 MGP_AJ_G0029122.1 mouse_genomes_project 4 148410872 148416859 - MGP_AJ_P0069503 Park7 protein_coding protein_coding MGP_AJ_T0069504.1 MGP_AJ_G0029122.1 mouse_genomes_project 4 148410996 148421142 - MGP_AJ_P0069504 Park7 protein_coding protein_coding MGP_AJ_T0066336.1 MGP_AJ_G0028386.1 mouse_genomes_project 4 85388770 85389567 - MGP_AJ_P0066336 Ifna12 protein_coding protein_coding MGP_AJ_T0018109.1 MGP_AJ_G0015560.1 mouse_genomes_project 4 149979645 149983197 - Gm16334 processed_transcript processed_transcript MGP_AJ_T0069858.1 MGP_AJ_G0029183.1 mouse_genomes_project 4 153234140 153267210 - MGP_AJ_P0069858 Gm10563 protein_coding protein_coding MGP_AJ_T0068592.1 MGP_AJ_G0028891.1 mouse_genomes_project 4 131165779 131310691 - MGP_AJ_P0068592 Man1c1 protein_coding protein_coding MGP_AJ_T0068593.1 MGP_AJ_G0028891.1 mouse_genomes_project 4 131165779 131310691 - MGP_AJ_P0068593 Man1c1 protein_coding protein_coding MGP_AJ_T0068594.1 MGP_AJ_G0028891.1 mouse_genomes_project 4 131171971 131310168 - Man1c1 protein_coding retained_intron MGP_AJ_T0102605.1 MGP_AJ_G0040347.1 mouse_genomes_project 4 111976219 111977090 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0101214.1 MGP_AJ_G0039180.1 mouse_genomes_project 4 53322846 53322978 - Gm26144 snoRNA snoRNA MGP_AJ_T0067098.1 MGP_AJ_G0028557.1 mouse_genomes_project 4 111449706 111454892 + MGP_AJ_P0067098 Pdzk1ip1 protein_coding protein_coding MGP_AJ_T0067099.1 MGP_AJ_G0028557.1 mouse_genomes_project 4 111449706 111454892 + MGP_AJ_P0067099 Pdzk1ip1 protein_coding protein_coding MGP_AJ_T0067100.1 MGP_AJ_G0028557.1 mouse_genomes_project 4 111449721 111454897 + MGP_AJ_P0067100 Pdzk1ip1 protein_coding protein_coding MGP_AJ_T0067101.1 MGP_AJ_G0028557.1 mouse_genomes_project 4 111449721 111454897 + MGP_AJ_P0067101 Pdzk1ip1 protein_coding protein_coding MGP_AJ_T0067102.1 MGP_AJ_G0028557.1 mouse_genomes_project 4 111450041 111452346 + Pdzk1ip1 protein_coding processed_transcript MGP_AJ_T0067103.1 MGP_AJ_G0028557.1 mouse_genomes_project 4 111451186 111454862 + Pdzk1ip1 protein_coding processed_transcript MGP_AJ_T0067104.1 MGP_AJ_G0028557.1 mouse_genomes_project 4 111451253 111452231 + Pdzk1ip1 protein_coding processed_transcript MGP_AJ_T0067105.1 MGP_AJ_G0028557.1 mouse_genomes_project 4 111451931 111454862 + Pdzk1ip1 protein_coding processed_transcript MGP_AJ_T0069658.1 MGP_AJ_G0029149.1 mouse_genomes_project 4 150960376 151077781 - MGP_AJ_P0069658 Ajap1 protein_coding protein_coding MGP_AJ_T0069659.1 MGP_AJ_G0029149.1 mouse_genomes_project 4 150961380 151077149 - MGP_AJ_P0069659 Ajap1 protein_coding nonsense_mediated_decay MGP_AJ_T0004423.1 MGP_AJ_G0003853.1 mouse_genomes_project 4 8039684 8041063 - Gm11831 antisense antisense MGP_AJ_T0068680.1 MGP_AJ_G0028911.1 mouse_genomes_project 4 132512617 132538154 + MGP_AJ_P0068680 Cnr2 protein_coding protein_coding MGP_AJ_T0068681.1 MGP_AJ_G0028911.1 mouse_genomes_project 4 132529799 132538153 + MGP_AJ_P0068681 Cnr2 protein_coding protein_coding MGP_AJ_T0069395.1 MGP_AJ_G0029103.1 mouse_genomes_project 4 146775591 146877521 - MGP_AJ_P0069395 Ube4b protein_coding protein_coding MGP_AJ_T0069396.1 MGP_AJ_G0029103.1 mouse_genomes_project 4 146775597 146782290 - MGP_AJ_P0069396 Ube4b protein_coding nonsense_mediated_decay MGP_AJ_T0069397.1 MGP_AJ_G0029103.1 mouse_genomes_project 4 146776674 146779008 - Ube4b protein_coding processed_transcript MGP_AJ_T0069398.1 MGP_AJ_G0029103.1 mouse_genomes_project 4 146776851 146876677 - MGP_AJ_P0069398 Ube4b protein_coding nonsense_mediated_decay MGP_AJ_T0069399.1 MGP_AJ_G0029103.1 mouse_genomes_project 4 146776851 146876677 - MGP_AJ_P0069399 Ube4b protein_coding nonsense_mediated_decay MGP_AJ_T0069400.1 MGP_AJ_G0029103.1 mouse_genomes_project 4 146782377 146783284 - Ube4b protein_coding processed_transcript MGP_AJ_T0069401.1 MGP_AJ_G0029103.1 mouse_genomes_project 4 146798636 146799614 - Ube4b protein_coding retained_intron MGP_AJ_T0069402.1 MGP_AJ_G0029103.1 mouse_genomes_project 4 146813483 146877403 - Ube4b protein_coding retained_intron MGP_AJ_T0069403.1 MGP_AJ_G0029103.1 mouse_genomes_project 4 146833531 146877372 - Ube4b protein_coding processed_transcript MGP_AJ_T0069404.1 MGP_AJ_G0029103.1 mouse_genomes_project 4 146835592 146836174 - Ube4b protein_coding processed_transcript MGP_AJ_T0069405.1 MGP_AJ_G0029103.1 mouse_genomes_project 4 146848061 146876988 - Ube4b protein_coding retained_intron MGP_AJ_T0069406.1 MGP_AJ_G0029103.1 mouse_genomes_project 4 146848073 146848996 - Ube4b protein_coding processed_transcript MGP_AJ_T0010606.1 MGP_AJ_G0008728.1 mouse_genomes_project 4 104897825 104897918 + Mir6397 miRNA miRNA MGP_AJ_T0065271.1 MGP_AJ_G0028149.1 mouse_genomes_project 4 39554931 39576269 + Phf24 protein_coding processed_transcript MGP_AJ_T0065272.1 MGP_AJ_G0028149.1 mouse_genomes_project 4 39554952 39572278 + MGP_AJ_P0065272 Phf24 protein_coding protein_coding MGP_AJ_T0065273.1 MGP_AJ_G0028149.1 mouse_genomes_project 4 39554965 39583121 + MGP_AJ_P0065273 Phf24 protein_coding protein_coding MGP_AJ_T0065274.1 MGP_AJ_G0028149.1 mouse_genomes_project 4 39555522 39583121 + MGP_AJ_P0065274 Phf24 protein_coding protein_coding MGP_AJ_T0065275.1 MGP_AJ_G0028149.1 mouse_genomes_project 4 39555541 39583121 + MGP_AJ_P0065275 Phf24 protein_coding protein_coding MGP_AJ_T0065276.1 MGP_AJ_G0028149.1 mouse_genomes_project 4 39555605 39578726 + MGP_AJ_P0065276 Phf24 protein_coding nonsense_mediated_decay MGP_AJ_T0065277.1 MGP_AJ_G0028149.1 mouse_genomes_project 4 39560507 39572244 + MGP_AJ_P0065277 Phf24 protein_coding protein_coding MGP_AJ_T0065278.1 MGP_AJ_G0028149.1 mouse_genomes_project 4 39572365 39577882 + MGP_AJ_P0065278 Phf24 protein_coding protein_coding MGP_AJ_T0065279.1 MGP_AJ_G0028149.1 mouse_genomes_project 4 39576622 39578202 + MGP_AJ_P0065279 Phf24 protein_coding protein_coding MGP_AJ_T0007848.1 MGP_AJ_G0006414.1 mouse_genomes_project 4 45574809 45641736 + lincRNA lincRNA MGP_AJ_T0069106.1 MGP_AJ_G0029012.1 mouse_genomes_project 4 138393934 138398761 - MGP_AJ_P0069106 Slc25a34 protein_coding protein_coding MGP_AJ_T0067872.1 MGP_AJ_G0028740.1 mouse_genomes_project 4 123078425 123111926 - MGP_AJ_P0067872 Ago1 protein_coding protein_coding MGP_AJ_T0067873.1 MGP_AJ_G0028740.1 mouse_genomes_project 4 123081733 123105110 - MGP_AJ_P0067873 Ago1 protein_coding nonsense_mediated_decay MGP_AJ_T0067874.1 MGP_AJ_G0028740.1 mouse_genomes_project 4 123082915 123102531 - MGP_AJ_P0067874 Ago1 protein_coding protein_coding MGP_AJ_T0067875.1 MGP_AJ_G0028740.1 mouse_genomes_project 4 123086012 123086774 - Ago1 protein_coding retained_intron MGP_AJ_T0067876.1 MGP_AJ_G0028740.1 mouse_genomes_project 4 123102638 123103448 - Ago1 protein_coding retained_intron MGP_AJ_T0064824.1 MGP_AJ_G0028035.1 mouse_genomes_project 4 14402289 14658879 + MGP_AJ_P0064824 Mmp16 protein_coding nonsense_mediated_decay MGP_AJ_T0064825.1 MGP_AJ_G0028035.1 mouse_genomes_project 4 14402487 14544277 + MGP_AJ_P0064825 Mmp16 protein_coding protein_coding MGP_AJ_T0064826.1 MGP_AJ_G0028035.1 mouse_genomes_project 4 14402870 14660567 + MGP_AJ_P0064826 Mmp16 protein_coding protein_coding MGP_AJ_T0064827.1 MGP_AJ_G0028035.1 mouse_genomes_project 4 14403005 14596905 + Mmp16 protein_coding retained_intron MGP_AJ_T0064828.1 MGP_AJ_G0028035.1 mouse_genomes_project 4 14593980 14635241 + Mmp16 protein_coding retained_intron MGP_AJ_T0001425.1 MGP_AJ_G0001347.1 mouse_genomes_project 4 132069808 132070138 + TEC TEC MGP_AJ_T0099937.1 MGP_AJ_G0037903.1 mouse_genomes_project 4 97852881 97852944 - Gm22100 snRNA snRNA MGP_AJ_T0102620.1 MGP_AJ_G0040362.1 mouse_genomes_project 4 140303623 140304124 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0010594.1 MGP_AJ_G0008716.1 mouse_genomes_project 4 73732988 73733065 - Gm23159 miRNA miRNA MGP_AJ_T0064831.1 MGP_AJ_G0028038.1 mouse_genomes_project 4 16080592 16131509 - MGP_AJ_P0064831 Cpne3 protein_coding protein_coding MGP_AJ_T0064832.1 MGP_AJ_G0028038.1 mouse_genomes_project 4 16101987 16105046 - Cpne3 protein_coding processed_transcript MGP_AJ_T0064833.1 MGP_AJ_G0028038.1 mouse_genomes_project 4 16110585 16131484 - Cpne3 protein_coding retained_intron MGP_AJ_T0007840.1 MGP_AJ_G0006407.1 mouse_genomes_project 4 40373874 40378386 + lincRNA lincRNA MGP_AJ_T0014644.1 MGP_AJ_G0012739.1 mouse_genomes_project 4 86243877 86246305 - processed_pseudogene processed_pseudogene MGP_AJ_T0007829.1 MGP_AJ_G0006396.1 mouse_genomes_project 4 27091129 27220876 + 4930556G01Rik lincRNA lincRNA MGP_AJ_T0066996.1 MGP_AJ_G0028534.1 mouse_genomes_project 4 106258211 106283790 - MGP_AJ_P0066996 Rnf11 protein_coding protein_coding MGP_AJ_T0066997.1 MGP_AJ_G0028534.1 mouse_genomes_project 4 106260012 106284097 - MGP_AJ_P0066997 Rnf11 protein_coding protein_coding MGP_AJ_T0066998.1 MGP_AJ_G0028534.1 mouse_genomes_project 4 106261397 106291819 - MGP_AJ_P0066998 Rnf11 protein_coding protein_coding MGP_AJ_T0064756.1 MGP_AJ_G0028014.1 mouse_genomes_project 4 8310991 8366030 + MGP_AJ_P0064756 Cdh17 protein_coding protein_coding MGP_AJ_T0064757.1 MGP_AJ_G0028014.1 mouse_genomes_project 4 8311037 8359644 + MGP_AJ_P0064757 Cdh17 protein_coding protein_coding MGP_AJ_T0064892.1 MGP_AJ_G0028054.1 mouse_genomes_project 4 18846976 18867296 + Fbxl4 protein_coding processed_transcript MGP_AJ_T0064893.1 MGP_AJ_G0028054.1 mouse_genomes_project 4 18846976 18920549 + MGP_AJ_P0064893 Fbxl4 protein_coding protein_coding MGP_AJ_T0064894.1 MGP_AJ_G0028054.1 mouse_genomes_project 4 18846993 18920522 + MGP_AJ_P0064894 Fbxl4 protein_coding nonsense_mediated_decay MGP_AJ_T0064895.1 MGP_AJ_G0028054.1 mouse_genomes_project 4 18847004 18920546 + MGP_AJ_P0064895 Fbxl4 protein_coding nonsense_mediated_decay MGP_AJ_T0064896.1 MGP_AJ_G0028054.1 mouse_genomes_project 4 18847049 18920533 + MGP_AJ_P0064896 Fbxl4 protein_coding nonsense_mediated_decay MGP_AJ_T0004555.1 MGP_AJ_G0003954.1 mouse_genomes_project 4 131921633 131923797 + Gm12984 antisense antisense MGP_AJ_T0065088.1 MGP_AJ_G0028101.1 mouse_genomes_project 4 36713654 36722797 - MGP_AJ_P0065088 Ndufb6 protein_coding protein_coding MGP_AJ_T0065089.1 MGP_AJ_G0028101.1 mouse_genomes_project 4 36713728 36722785 - MGP_AJ_P0065089 Ndufb6 protein_coding protein_coding MGP_AJ_T0010577.1 MGP_AJ_G0008699.1 mouse_genomes_project 4 27128560 27128669 - Gm22831 miRNA miRNA MGP_AJ_T0007814.1 MGP_AJ_G0006382.1 mouse_genomes_project 4 10494215 10565284 - Gm11823 lincRNA lincRNA MGP_AJ_T0069083.1 MGP_AJ_G0029009.1 mouse_genomes_project 4 138236600 138312252 - MGP_AJ_P0069083 Spen protein_coding protein_coding MGP_AJ_T0069084.1 MGP_AJ_G0029009.1 mouse_genomes_project 4 138236600 138312104 - MGP_AJ_P0069084 Spen protein_coding protein_coding MGP_AJ_T0069085.1 MGP_AJ_G0029009.1 mouse_genomes_project 4 138237165 138240194 - Spen protein_coding processed_transcript MGP_AJ_T0069086.1 MGP_AJ_G0029009.1 mouse_genomes_project 4 138267589 138289639 - Spen protein_coding processed_transcript MGP_AJ_T0069087.1 MGP_AJ_G0029009.1 mouse_genomes_project 4 138295250 138311908 - Spen protein_coding processed_transcript MGP_AJ_T0068650.1 MGP_AJ_G0028902.1 mouse_genomes_project 4 132030530 132052025 - MGP_AJ_P0068650 Rcan3 protein_coding protein_coding MGP_AJ_T0068651.1 MGP_AJ_G0028902.1 mouse_genomes_project 4 132030530 132043440 - MGP_AJ_P0068651 Rcan3 protein_coding protein_coding MGP_AJ_T0068652.1 MGP_AJ_G0028902.1 mouse_genomes_project 4 132036662 132051995 - MGP_AJ_P0068652 Rcan3 protein_coding protein_coding MGP_AJ_T0018086.1 MGP_AJ_G0015551.1 mouse_genomes_project 4 121332200 121347757 - Gm12915 processed_transcript processed_transcript MGP_AJ_T0102592.1 MGP_AJ_G0040334.1 mouse_genomes_project 4 85479825 85480333 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0067284.1 MGP_AJ_G0028597.1 mouse_genomes_project 4 113208217 113220223 + MGP_AJ_P0067284 Mutyh protein_coding protein_coding MGP_AJ_T0067285.1 MGP_AJ_G0028597.1 mouse_genomes_project 4 113208219 113216424 + MGP_AJ_P0067285 Mutyh protein_coding protein_coding MGP_AJ_T0067286.1 MGP_AJ_G0028597.1 mouse_genomes_project 4 113208232 113220230 + Mutyh protein_coding retained_intron MGP_AJ_T0067287.1 MGP_AJ_G0028597.1 mouse_genomes_project 4 113208242 113219568 + Mutyh protein_coding retained_intron MGP_AJ_T0067288.1 MGP_AJ_G0028597.1 mouse_genomes_project 4 113214900 113220175 + MGP_AJ_P0067288 Mutyh protein_coding nonsense_mediated_decay MGP_AJ_T0067289.1 MGP_AJ_G0028597.1 mouse_genomes_project 4 113214958 113217828 + Mutyh protein_coding retained_intron MGP_AJ_T0067290.1 MGP_AJ_G0028597.1 mouse_genomes_project 4 113218486 113220232 + Mutyh protein_coding retained_intron MGP_AJ_T0018079.1 MGP_AJ_G0015545.1 mouse_genomes_project 4 111252125 111264164 + Foxd2os processed_transcript processed_transcript MGP_AJ_T0018080.1 MGP_AJ_G0015545.1 mouse_genomes_project 4 111252125 111265759 + Foxd2os processed_transcript processed_transcript MGP_AJ_T0014608.1 MGP_AJ_G0012703.1 mouse_genomes_project 4 72144672 72145387 + processed_pseudogene processed_pseudogene MGP_AJ_T0069786.1 MGP_AJ_G0029172.1 mouse_genomes_project 4 152682156 152694274 - MGP_AJ_P0069786 Rer1 protein_coding unknown_likely_coding MGP_AJ_T0069787.1 MGP_AJ_G0029172.1 mouse_genomes_project 4 152682157 152694258 - Rer1 protein_coding processed_transcript MGP_AJ_T0069788.1 MGP_AJ_G0029172.1 mouse_genomes_project 4 152690571 152694269 - Rer1 protein_coding processed_transcript MGP_AJ_T0014632.1 MGP_AJ_G0012727.1 mouse_genomes_project 4 81636868 81637810 + processed_pseudogene processed_pseudogene MGP_AJ_T0099898.1 MGP_AJ_G0037864.1 mouse_genomes_project 4 14099569 14099672 - Gm23384 snRNA snRNA MGP_AJ_T0065710.1 MGP_AJ_G0028229.1 mouse_genomes_project 4 44721845 44763670 + MGP_AJ_P0065710 Nr4a3 protein_coding protein_coding MGP_AJ_T0065711.1 MGP_AJ_G0028229.1 mouse_genomes_project 4 44721923 44726858 + Nr4a3 protein_coding processed_transcript MGP_AJ_T0065712.1 MGP_AJ_G0028229.1 mouse_genomes_project 4 44725806 44763672 + MGP_AJ_P0065712 Nr4a3 protein_coding protein_coding MGP_AJ_T0065713.1 MGP_AJ_G0028229.1 mouse_genomes_project 4 44727940 44733432 + Nr4a3 protein_coding processed_transcript MGP_AJ_T0014411.1 MGP_AJ_G0012506.1 mouse_genomes_project 4 7956768 7957183 - processed_pseudogene processed_pseudogene MGP_AJ_T0064812.1 MGP_AJ_G0028031.1 mouse_genomes_project 4 12468067 12496351 - MGP_AJ_P0064812 Decr1 protein_coding protein_coding MGP_AJ_T0064813.1 MGP_AJ_G0028031.1 mouse_genomes_project 4 12483822 12496119 - Decr1 protein_coding processed_transcript MGP_AJ_T0064814.1 MGP_AJ_G0028031.1 mouse_genomes_project 4 12494534 12495333 - Decr1 protein_coding processed_transcript MGP_AJ_T0069022.1 MGP_AJ_G0028995.1 mouse_genomes_project 4 137777380 137789917 - Crocc protein_coding retained_intron MGP_AJ_T0069023.1 MGP_AJ_G0028995.1 mouse_genomes_project 4 137777380 137782868 - Crocc protein_coding retained_intron MGP_AJ_T0069024.1 MGP_AJ_G0028995.1 mouse_genomes_project 4 137777722 137779544 - Crocc protein_coding retained_intron MGP_AJ_T0069025.1 MGP_AJ_G0028995.1 mouse_genomes_project 4 137777789 137813900 - MGP_AJ_P0069025 Crocc protein_coding protein_coding MGP_AJ_T0069026.1 MGP_AJ_G0028995.1 mouse_genomes_project 4 137780468 137783260 - Crocc protein_coding retained_intron MGP_AJ_T0069027.1 MGP_AJ_G0028995.1 mouse_genomes_project 4 137782281 137783290 - Crocc protein_coding retained_intron MGP_AJ_T0069028.1 MGP_AJ_G0028995.1 mouse_genomes_project 4 137805180 137820867 - MGP_AJ_P0069028 Crocc protein_coding protein_coding MGP_AJ_T0069029.1 MGP_AJ_G0028995.1 mouse_genomes_project 4 137806415 137818430 - Crocc protein_coding retained_intron MGP_AJ_T0066382.1 MGP_AJ_G0028411.1 mouse_genomes_project 4 91243276 91301144 - MGP_AJ_P0066382 Caap1 protein_coding protein_coding MGP_AJ_T0066383.1 MGP_AJ_G0028411.1 mouse_genomes_project 4 91293965 91301114 - Caap1 protein_coding processed_transcript MGP_AJ_T0069209.1 MGP_AJ_G0029060.1 mouse_genomes_project 4 141537219 141547205 - MGP_AJ_P0069209 Aadacl3 protein_coding protein_coding MGP_AJ_T0069372.1 MGP_AJ_G0029100.1 mouse_genomes_project 4 146568006 146578115 - MGP_AJ_P0069372 Apitd1 protein_coding nonsense_mediated_decay MGP_AJ_T0069373.1 MGP_AJ_G0029100.1 mouse_genomes_project 4 146569235 146578090 - MGP_AJ_P0069373 Apitd1 protein_coding protein_coding MGP_AJ_T0069374.1 MGP_AJ_G0029100.1 mouse_genomes_project 4 146569349 146578136 - MGP_AJ_P0069374 Apitd1 protein_coding protein_coding MGP_AJ_T0069375.1 MGP_AJ_G0029100.1 mouse_genomes_project 4 146569356 146571266 - Apitd1 protein_coding retained_intron MGP_AJ_T0069376.1 MGP_AJ_G0029100.1 mouse_genomes_project 4 146569585 146578132 - MGP_AJ_P0069376 Apitd1 protein_coding protein_coding MGP_AJ_T0069377.1 MGP_AJ_G0029100.1 mouse_genomes_project 4 146572163 146578144 - MGP_AJ_P0069377 Apitd1 protein_coding protein_coding MGP_AJ_T0014589.1 MGP_AJ_G0012684.1 mouse_genomes_project 4 66727019 66728130 - processed_pseudogene processed_pseudogene MGP_AJ_T0099967.1 MGP_AJ_G0037933.1 mouse_genomes_project 4 130383363 130383511 - Gm25270 snRNA snRNA MGP_AJ_T0064597.1 MGP_AJ_G0027984.1 mouse_genomes_project 4 458764 500988 - MGP_AJ_P0064597 Plag1 protein_coding protein_coding MGP_AJ_T0064598.1 MGP_AJ_G0027984.1 mouse_genomes_project 4 462619 501011 - MGP_AJ_P0064598 Plag1 protein_coding nonsense_mediated_decay MGP_AJ_T0064599.1 MGP_AJ_G0027984.1 mouse_genomes_project 4 463278 501029 - MGP_AJ_P0064599 Plag1 protein_coding nonsense_mediated_decay MGP_AJ_T0064600.1 MGP_AJ_G0027984.1 mouse_genomes_project 4 469586 500999 - Plag1 protein_coding retained_intron MGP_AJ_T0099943.1 MGP_AJ_G0037909.1 mouse_genomes_project 4 105331522 105331629 - Gm25827 snRNA snRNA MGP_AJ_T0065373.1 MGP_AJ_G0028160.1 mouse_genomes_project 4 40064669 40066785 - MGP_AJ_P0065373 Fam166b protein_coding protein_coding MGP_AJ_T0065374.1 MGP_AJ_G0028160.1 mouse_genomes_project 4 40064726 40066768 - MGP_AJ_P0065374 Fam166b protein_coding protein_coding MGP_AJ_T0065375.1 MGP_AJ_G0028160.1 mouse_genomes_project 4 40064790 40066740 - MGP_AJ_P0065375 Fam166b protein_coding protein_coding MGP_AJ_T0065376.1 MGP_AJ_G0028160.1 mouse_genomes_project 4 40064790 40065675 - MGP_AJ_P0065376 Fam166b protein_coding protein_coding MGP_AJ_T0065377.1 MGP_AJ_G0028160.1 mouse_genomes_project 4 40064833 40066740 - MGP_AJ_P0065377 Fam166b protein_coding protein_coding MGP_AJ_T0065378.1 MGP_AJ_G0028160.1 mouse_genomes_project 4 40065238 40066740 - MGP_AJ_P0065378 Fam166b protein_coding nonsense_mediated_decay MGP_AJ_T0014532.1 MGP_AJ_G0012627.1 mouse_genomes_project 4 43700221 43700584 + processed_pseudogene processed_pseudogene MGP_AJ_T0067700.1 MGP_AJ_G0028699.1 mouse_genomes_project 4 119889299 119924751 - MGP_AJ_P0067700 Bmp8a protein_coding protein_coding MGP_AJ_T0064933.1 MGP_AJ_G0028065.1 mouse_genomes_project 4 25283527 25438534 + MGP_AJ_P0064933 Epha7 protein_coding protein_coding MGP_AJ_T0064934.1 MGP_AJ_G0028065.1 mouse_genomes_project 4 25283527 25417607 + MGP_AJ_P0064934 Epha7 protein_coding protein_coding MGP_AJ_T0064935.1 MGP_AJ_G0028065.1 mouse_genomes_project 4 25283548 25437850 + MGP_AJ_P0064935 Epha7 protein_coding protein_coding MGP_AJ_T0064936.1 MGP_AJ_G0028065.1 mouse_genomes_project 4 25283646 25438534 + MGP_AJ_P0064936 Epha7 protein_coding protein_coding MGP_AJ_T0064937.1 MGP_AJ_G0028065.1 mouse_genomes_project 4 25283722 25344135 + Epha7 protein_coding processed_transcript MGP_AJ_T0064938.1 MGP_AJ_G0028065.1 mouse_genomes_project 4 25285825 25291593 + Epha7 protein_coding processed_transcript MGP_AJ_T0064939.1 MGP_AJ_G0028065.1 mouse_genomes_project 4 25342175 25414060 + Epha7 protein_coding processed_transcript MGP_AJ_T0064940.1 MGP_AJ_G0028065.1 mouse_genomes_project 4 25342258 25416894 + Epha7 protein_coding processed_transcript MGP_AJ_T0067094.1 MGP_AJ_G0028556.1 mouse_genomes_project 4 111415790 111432255 + MGP_AJ_P0067094 Tal1 protein_coding protein_coding MGP_AJ_T0067095.1 MGP_AJ_G0028556.1 mouse_genomes_project 4 111416802 111424029 + MGP_AJ_P0067095 Tal1 protein_coding protein_coding MGP_AJ_T0067096.1 MGP_AJ_G0028556.1 mouse_genomes_project 4 111417175 111431727 + MGP_AJ_P0067096 Tal1 protein_coding protein_coding MGP_AJ_T0067097.1 MGP_AJ_G0028556.1 mouse_genomes_project 4 111418872 111430895 + MGP_AJ_P0067097 Tal1 protein_coding protein_coding MGP_AJ_T0069505.1 MGP_AJ_G0029123.1 mouse_genomes_project 4 148421497 148441667 + MGP_AJ_P0069505 Tnfrsf9 protein_coding protein_coding MGP_AJ_T0069507.1 MGP_AJ_G0029123.1 mouse_genomes_project 4 148427187 148454100 + MGP_AJ_P0069507 Tnfrsf9 protein_coding protein_coding MGP_AJ_T0069508.1 MGP_AJ_G0029123.1 mouse_genomes_project 4 148427222 148454100 + MGP_AJ_P0069508 Tnfrsf9 protein_coding protein_coding MGP_AJ_T0069509.1 MGP_AJ_G0029123.1 mouse_genomes_project 4 148432332 148453230 + MGP_AJ_P0069509 Tnfrsf9 protein_coding protein_coding MGP_AJ_T0069510.1 MGP_AJ_G0029123.1 mouse_genomes_project 4 148434930 148441658 + MGP_AJ_P0069510 Tnfrsf9 protein_coding protein_coding MGP_AJ_T0069511.1 MGP_AJ_G0029123.1 mouse_genomes_project 4 148435011 148437084 + Tnfrsf9 protein_coding processed_transcript MGP_AJ_T0069512.1 MGP_AJ_G0029123.1 mouse_genomes_project 4 148435011 148454100 + MGP_AJ_P0069512 Tnfrsf9 protein_coding protein_coding MGP_AJ_T0069513.1 MGP_AJ_G0029123.1 mouse_genomes_project 4 148436811 148453065 + MGP_AJ_P0069513 Tnfrsf9 protein_coding protein_coding MGP_AJ_T0069514.1 MGP_AJ_G0029123.1 mouse_genomes_project 4 148436932 148442812 + MGP_AJ_P0069514 Tnfrsf9 protein_coding protein_coding MGP_AJ_T0069320.1 MGP_AJ_G0029092.1 mouse_genomes_project 4 146027459 146030592 + MGP_AJ_P0069320 Srm protein_coding protein_coding MGP_AJ_T0069321.1 MGP_AJ_G0029092.1 mouse_genomes_project 4 146027873 146030162 + Srm protein_coding retained_intron MGP_AJ_T0069322.1 MGP_AJ_G0029092.1 mouse_genomes_project 4 146029856 146030966 + Srm protein_coding processed_transcript MGP_AJ_T0014735.1 MGP_AJ_G0012830.1 mouse_genomes_project 4 114912667 114913094 - processed_pseudogene processed_pseudogene MGP_AJ_T0004493.1 MGP_AJ_G0003906.1 mouse_genomes_project 4 103358722 103361951 - 2700068H02Rik antisense antisense MGP_AJ_T0069030.1 MGP_AJ_G0028996.1 mouse_genomes_project 4 137826787 137839691 - Necap2 protein_coding processed_transcript MGP_AJ_T0069031.1 MGP_AJ_G0028996.1 mouse_genomes_project 4 137826787 137839706 - MGP_AJ_P0069031 Necap2 protein_coding protein_coding MGP_AJ_T0069032.1 MGP_AJ_G0028996.1 mouse_genomes_project 4 137827622 137836406 - Necap2 protein_coding retained_intron MGP_AJ_T0069033.1 MGP_AJ_G0028996.1 mouse_genomes_project 4 137827670 137829114 - Necap2 protein_coding retained_intron MGP_AJ_T0069034.1 MGP_AJ_G0028996.1 mouse_genomes_project 4 137827791 137832115 - Necap2 protein_coding retained_intron MGP_AJ_T0069035.1 MGP_AJ_G0028996.1 mouse_genomes_project 4 137827838 137833981 - MGP_AJ_P0069035 Necap2 protein_coding nonsense_mediated_decay MGP_AJ_T0069036.1 MGP_AJ_G0028996.1 mouse_genomes_project 4 137828484 137839706 - Necap2 protein_coding processed_transcript MGP_AJ_T0069037.1 MGP_AJ_G0028996.1 mouse_genomes_project 4 137830357 137839706 - Necap2 protein_coding processed_transcript MGP_AJ_T0069038.1 MGP_AJ_G0028996.1 mouse_genomes_project 4 137830427 137832049 - Necap2 protein_coding retained_intron MGP_AJ_T0069039.1 MGP_AJ_G0028996.1 mouse_genomes_project 4 137830455 137839643 - Necap2 protein_coding retained_intron MGP_AJ_T0069040.1 MGP_AJ_G0028996.1 mouse_genomes_project 4 137832604 137839706 - Necap2 protein_coding retained_intron MGP_AJ_T0065609.1 MGP_AJ_G0028204.1 mouse_genomes_project 4 42095856 42155557 - Shb protein_coding processed_transcript MGP_AJ_T0065610.1 MGP_AJ_G0028204.1 mouse_genomes_project 4 42095856 42202915 - MGP_AJ_P0065610 Shb protein_coding protein_coding MGP_AJ_T0065611.1 MGP_AJ_G0028204.1 mouse_genomes_project 4 42117256 42165606 - Shb protein_coding processed_transcript MGP_AJ_T0065612.1 MGP_AJ_G0028204.1 mouse_genomes_project 4 42120052 42162165 - Shb protein_coding retained_intron MGP_AJ_T0065613.1 MGP_AJ_G0028204.1 mouse_genomes_project 4 42130728 42162557 - MGP_AJ_P0065613 Shb protein_coding protein_coding MGP_AJ_T0065614.1 MGP_AJ_G0028204.1 mouse_genomes_project 4 42130919 42205055 - MGP_AJ_P0065614 Shb protein_coding protein_coding MGP_AJ_T0066848.1 MGP_AJ_G0028508.1 mouse_genomes_project 4 104707847 104727469 - MGP_AJ_P0066848 Cpt2 protein_coding protein_coding MGP_AJ_T0066849.1 MGP_AJ_G0028508.1 mouse_genomes_project 4 104707849 104727419 - MGP_AJ_P0066849 Cpt2 protein_coding protein_coding MGP_AJ_T0066850.1 MGP_AJ_G0028508.1 mouse_genomes_project 4 104711482 104727404 - MGP_AJ_P0066850 Cpt2 protein_coding protein_coding MGP_AJ_T0066851.1 MGP_AJ_G0028508.1 mouse_genomes_project 4 104711569 104716638 - Cpt2 protein_coding retained_intron MGP_AJ_T0066852.1 MGP_AJ_G0028508.1 mouse_genomes_project 4 104711716 104727306 - Cpt2 protein_coding processed_transcript MGP_AJ_T0066853.1 MGP_AJ_G0028508.1 mouse_genomes_project 4 104712071 104727447 - MGP_AJ_P0066853 Cpt2 protein_coding protein_coding MGP_AJ_T0064920.1 MGP_AJ_G0028060.1 mouse_genomes_project 4 21644371 21701655 - MGP_AJ_P0064920 Fhl5 protein_coding protein_coding MGP_AJ_T0064921.1 MGP_AJ_G0028060.1 mouse_genomes_project 4 21644371 21701655 - MGP_AJ_P0064921 Fhl5 protein_coding protein_coding MGP_AJ_T0007897.1 MGP_AJ_G0006454.1 mouse_genomes_project 4 88418585 88423467 + Gm12670 lincRNA lincRNA MGP_AJ_T0099907.1 MGP_AJ_G0037873.1 mouse_genomes_project 4 36310584 36310666 + Gm22850 snRNA snRNA MGP_AJ_T0069159.1 MGP_AJ_G0029028.1 mouse_genomes_project 4 140233595 140239311 + MGP_AJ_P0069159 Pramel1 protein_coding protein_coding MGP_AJ_T0067474.1 MGP_AJ_G0028633.1 mouse_genomes_project 4 114958406 114961194 - MGP_AJ_P0067474 Tmem125 protein_coding protein_coding MGP_AJ_T0067475.1 MGP_AJ_G0028633.1 mouse_genomes_project 4 114959324 114961510 - MGP_AJ_P0067475 Tmem125 protein_coding protein_coding MGP_AJ_T0067476.1 MGP_AJ_G0028633.1 mouse_genomes_project 4 114959482 114960428 - MGP_AJ_P0067476 Tmem125 protein_coding protein_coding MGP_AJ_T0067477.1 MGP_AJ_G0028633.1 mouse_genomes_project 4 114959532 114960755 - MGP_AJ_P0067477 Tmem125 protein_coding protein_coding MGP_AJ_T0067478.1 MGP_AJ_G0028633.1 mouse_genomes_project 4 114960067 114960715 - Tmem125 protein_coding processed_transcript MGP_AJ_T0067771.1 MGP_AJ_G0028717.1 mouse_genomes_project 4 121481948 121487914 + MGP_AJ_P0067771 protein_coding protein_coding MGP_AJ_T0067772.1 MGP_AJ_G0028717.1 mouse_genomes_project 4 121486800 121518724 + MGP_AJ_P0067772 protein_coding protein_coding MGP_AJ_T0067773.1 MGP_AJ_G0028717.1 mouse_genomes_project 4 121500026 121503682 + protein_coding processed_transcript MGP_AJ_T0004422.1 MGP_AJ_G0003852.1 mouse_genomes_project 4 5908071 5923646 - Gm11817 antisense antisense MGP_AJ_T0069188.1 MGP_AJ_G0029047.1 mouse_genomes_project 4 140822040 140825225 - MGP_AJ_P0069188 protein_coding protein_coding MGP_AJ_T0065914.1 MGP_AJ_G0028288.1 mouse_genomes_project 4 55442103 55561647 - MGP_AJ_P0065914 AI314180 protein_coding protein_coding MGP_AJ_T0065915.1 MGP_AJ_G0028288.1 mouse_genomes_project 4 55453868 55455090 - AI314180 protein_coding processed_transcript MGP_AJ_T0065916.1 MGP_AJ_G0028288.1 mouse_genomes_project 4 55454674 55560840 - MGP_AJ_P0065916 AI314180 protein_coding protein_coding MGP_AJ_T0065917.1 MGP_AJ_G0028288.1 mouse_genomes_project 4 55458560 55462816 - AI314180 protein_coding processed_transcript MGP_AJ_T0065918.1 MGP_AJ_G0028288.1 mouse_genomes_project 4 55462566 55477273 - AI314180 protein_coding processed_transcript MGP_AJ_T0065919.1 MGP_AJ_G0028288.1 mouse_genomes_project 4 55473751 55560837 - MGP_AJ_P0065919 AI314180 protein_coding protein_coding MGP_AJ_T0065920.1 MGP_AJ_G0028288.1 mouse_genomes_project 4 55475910 55478122 - AI314180 protein_coding processed_transcript MGP_AJ_T0065921.1 MGP_AJ_G0028288.1 mouse_genomes_project 4 55479301 55489284 - AI314180 protein_coding processed_transcript MGP_AJ_T0065922.1 MGP_AJ_G0028288.1 mouse_genomes_project 4 55488533 55561602 - MGP_AJ_P0065922 AI314180 protein_coding protein_coding MGP_AJ_T0065923.1 MGP_AJ_G0028288.1 mouse_genomes_project 4 55508720 55561647 - MGP_AJ_P0065923 AI314180 protein_coding protein_coding MGP_AJ_T0065924.1 MGP_AJ_G0028288.1 mouse_genomes_project 4 55517293 55560812 - MGP_AJ_P0065924 AI314180 protein_coding protein_coding MGP_AJ_T0004609.1 MGP_AJ_G0003996.1 mouse_genomes_project 4 152161143 152168509 + Gm13133 antisense antisense MGP_AJ_T0101205.1 MGP_AJ_G0039171.1 mouse_genomes_project 4 43170293 43170424 + Gm22247 snoRNA snoRNA MGP_AJ_T0065960.1 MGP_AJ_G0028300.1 mouse_genomes_project 4 56431647 56445896 - MGP_AJ_P0065960 Inip protein_coding protein_coding MGP_AJ_T0065961.1 MGP_AJ_G0028300.1 mouse_genomes_project 4 56436099 56445848 - Inip protein_coding processed_transcript MGP_AJ_T0065962.1 MGP_AJ_G0028300.1 mouse_genomes_project 4 56443018 56445859 - Inip protein_coding processed_transcript MGP_AJ_T0066163.1 MGP_AJ_G0028356.1 mouse_genomes_project 4 77601128 77604685 + MGP_AJ_P0066163 Tyrp1 protein_coding protein_coding MGP_AJ_T0066164.1 MGP_AJ_G0028356.1 mouse_genomes_project 4 77601235 77618708 + MGP_AJ_P0066164 Tyrp1 protein_coding protein_coding MGP_AJ_T0066165.1 MGP_AJ_G0028356.1 mouse_genomes_project 4 77601309 77618709 + MGP_AJ_P0066165 Tyrp1 protein_coding protein_coding MGP_AJ_T0066166.1 MGP_AJ_G0028356.1 mouse_genomes_project 4 77613576 77617990 + MGP_AJ_P0066166 Tyrp1 protein_coding protein_coding MGP_AJ_T0067327.1 MGP_AJ_G0028605.1 mouse_genomes_project 4 113537822 113539381 + MGP_AJ_P0067327 Tctex1d4 protein_coding protein_coding MGP_AJ_T0067328.1 MGP_AJ_G0028605.1 mouse_genomes_project 4 113537841 113539783 + MGP_AJ_P0067328 Tctex1d4 protein_coding protein_coding MGP_AJ_T0067329.1 MGP_AJ_G0028605.1 mouse_genomes_project 4 113538202 113539560 + MGP_AJ_P0067329 Tctex1d4 protein_coding protein_coding MGP_AJ_T0014796.1 MGP_AJ_G0012891.1 mouse_genomes_project 4 132469787 132470285 + processed_pseudogene processed_pseudogene MGP_AJ_T0010569.1 MGP_AJ_G0008691.1 mouse_genomes_project 4 7385070 7385177 + n-TSaga9 miRNA miRNA MGP_AJ_T0014835.1 MGP_AJ_G0012930.1 mouse_genomes_project 4 149692115 149692652 - processed_pseudogene processed_pseudogene MGP_AJ_T0099923.1 MGP_AJ_G0037889.1 mouse_genomes_project 4 60408081 60408188 - Gm24234 snRNA snRNA MGP_AJ_T0068765.1 MGP_AJ_G0028929.1 mouse_genomes_project 4 133251183 133254128 + MGP_AJ_P0068765 4930549C01Rik protein_coding protein_coding MGP_AJ_T0066344.1 MGP_AJ_G0028390.1 mouse_genomes_project 4 85457074 85457644 - MGP_AJ_P0066344 protein_coding protein_coding MGP_AJ_T0018062.1 MGP_AJ_G0015533.1 mouse_genomes_project 4 86223481 86265655 + Gm12610 processed_transcript processed_transcript MGP_AJ_T0066396.1 MGP_AJ_G0028416.1 mouse_genomes_project 4 91484883 91610030 + MGP_AJ_P0066396 Tek protein_coding protein_coding MGP_AJ_T0066397.1 MGP_AJ_G0028416.1 mouse_genomes_project 4 91484894 91609993 + MGP_AJ_P0066397 Tek protein_coding protein_coding MGP_AJ_T0066398.1 MGP_AJ_G0028416.1 mouse_genomes_project 4 91485112 91609736 + MGP_AJ_P0066398 Tek protein_coding protein_coding MGP_AJ_T0066399.1 MGP_AJ_G0028416.1 mouse_genomes_project 4 91485235 91609998 + MGP_AJ_P0066399 Tek protein_coding unknown_likely_coding MGP_AJ_T0066400.1 MGP_AJ_G0028416.1 mouse_genomes_project 4 91485235 91609998 + MGP_AJ_P0066400 Tek protein_coding unknown_likely_coding MGP_AJ_T0066401.1 MGP_AJ_G0028416.1 mouse_genomes_project 4 91548797 91557984 + Tek protein_coding processed_transcript MGP_AJ_T0064643.1 MGP_AJ_G0027994.1 mouse_genomes_project 4 2923938 2982000 - Nsmaf protein_coding retained_intron MGP_AJ_T0064644.1 MGP_AJ_G0027994.1 mouse_genomes_project 4 2923938 2982000 - MGP_AJ_P0064644 Nsmaf protein_coding protein_coding MGP_AJ_T0064645.1 MGP_AJ_G0027994.1 mouse_genomes_project 4 2924142 2926739 - Nsmaf protein_coding retained_intron MGP_AJ_T0064646.1 MGP_AJ_G0027994.1 mouse_genomes_project 4 2924500 2981825 - Nsmaf protein_coding processed_transcript MGP_AJ_T0064647.1 MGP_AJ_G0027994.1 mouse_genomes_project 4 2934882 2981984 - Nsmaf protein_coding processed_transcript MGP_AJ_T0064648.1 MGP_AJ_G0027994.1 mouse_genomes_project 4 2937494 2952886 - Nsmaf protein_coding retained_intron MGP_AJ_T0064649.1 MGP_AJ_G0027994.1 mouse_genomes_project 4 2953464 2960602 - Nsmaf protein_coding retained_intron MGP_AJ_T0064650.1 MGP_AJ_G0027994.1 mouse_genomes_project 4 2957341 2981308 - Nsmaf protein_coding processed_transcript MGP_AJ_T0064651.1 MGP_AJ_G0027994.1 mouse_genomes_project 4 2958613 2973990 - Nsmaf protein_coding processed_transcript MGP_AJ_T0064652.1 MGP_AJ_G0027994.1 mouse_genomes_project 4 2961175 2981826 - MGP_AJ_P0064652 Nsmaf protein_coding protein_coding MGP_AJ_T0064653.1 MGP_AJ_G0027994.1 mouse_genomes_project 4 2965815 2972060 - Nsmaf protein_coding processed_transcript MGP_AJ_T0064932.1 MGP_AJ_G0028064.1 mouse_genomes_project 4 22825894 22827451 - MGP_AJ_P0064932 Bhmt protein_coding protein_coding MGP_AJ_T0068027.1 MGP_AJ_G0028775.1 mouse_genomes_project 4 125863410 125893071 + MGP_AJ_P0068027 Yars protein_coding protein_coding MGP_AJ_T0068028.1 MGP_AJ_G0028775.1 mouse_genomes_project 4 125863552 125871092 + Yars protein_coding retained_intron MGP_AJ_T0068029.1 MGP_AJ_G0028775.1 mouse_genomes_project 4 125870765 125884020 + MGP_AJ_P0068029 Yars protein_coding nonsense_mediated_decay MGP_AJ_T0068030.1 MGP_AJ_G0028775.1 mouse_genomes_project 4 125870884 125882058 + Yars protein_coding processed_transcript MGP_AJ_T0068031.1 MGP_AJ_G0028775.1 mouse_genomes_project 4 125882980 125884294 + Yars protein_coding retained_intron MGP_AJ_T0068032.1 MGP_AJ_G0028775.1 mouse_genomes_project 4 125885685 125889190 + Yars protein_coding retained_intron MGP_AJ_T0068033.1 MGP_AJ_G0028775.1 mouse_genomes_project 4 125886137 125892127 + Yars protein_coding processed_transcript MGP_AJ_T0068034.1 MGP_AJ_G0028775.1 mouse_genomes_project 4 125887204 125888398 + Yars protein_coding retained_intron MGP_AJ_T0067209.1 MGP_AJ_G0028584.1 mouse_genomes_project 4 112617826 112663429 + MGP_AJ_P0067209 Pik3r3 protein_coding protein_coding MGP_AJ_T0067210.1 MGP_AJ_G0028584.1 mouse_genomes_project 4 112617869 112702473 + MGP_AJ_P0067210 Pik3r3 protein_coding protein_coding MGP_AJ_T0067211.1 MGP_AJ_G0028584.1 mouse_genomes_project 4 112617904 112699258 + MGP_AJ_P0067211 Pik3r3 protein_coding protein_coding MGP_AJ_T0007882.1 MGP_AJ_G0006442.1 mouse_genomes_project 4 78677172 78679070 - Gm12914 lincRNA lincRNA MGP_AJ_T0007917.1 MGP_AJ_G0006471.1 mouse_genomes_project 4 100018575 100021293 + Gm44037 lincRNA lincRNA MGP_AJ_T0011820.1 MGP_AJ_G0009927.1 mouse_genomes_project 4 135542163 135545490 + MGP_AJ_P0011820 Pla2g2a polymorphic_pseudogene protein_coding MGP_AJ_T0011821.1 MGP_AJ_G0009927.1 mouse_genomes_project 4 135542182 135544176 + Pla2g2a polymorphic_pseudogene processed_transcript MGP_AJ_T0011822.1 MGP_AJ_G0009927.1 mouse_genomes_project 4 135543565 135545493 + Pla2g2a polymorphic_pseudogene retained_intron MGP_AJ_T0099930.1 MGP_AJ_G0037896.1 mouse_genomes_project 4 89650199 89650307 - Gm22605 snRNA snRNA MGP_AJ_T0102588.1 MGP_AJ_G0040330.1 mouse_genomes_project 4 83380525 83412867 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0069897.1 MGP_AJ_G0029192.1 mouse_genomes_project 4 153400152 153404433 - MGP_AJ_P0069897 Tmem88b protein_coding protein_coding MGP_AJ_T0069310.1 MGP_AJ_G0029090.1 mouse_genomes_project 4 145926801 145932597 - MGP_AJ_P0069310 Angptl7 protein_coding protein_coding MGP_AJ_T0014572.1 MGP_AJ_G0012667.1 mouse_genomes_project 4 55238615 55239032 + processed_pseudogene processed_pseudogene MGP_AJ_T0014534.1 MGP_AJ_G0012629.1 mouse_genomes_project 4 44111536 44112858 + processed_pseudogene processed_pseudogene MGP_AJ_T0069880.1 MGP_AJ_G0029187.1 mouse_genomes_project 4 153312236 153314376 + MGP_AJ_P0069880 Fndc10 protein_coding protein_coding MGP_AJ_T0068284.1 MGP_AJ_G0028821.1 mouse_genomes_project 4 128622055 128624351 + MGP_AJ_P0068284 Gm10300 protein_coding protein_coding MGP_AJ_T0066004.1 MGP_AJ_G0028315.1 mouse_genomes_project 4 59235213 59253084 + MGP_AJ_P0066004 Bspry protein_coding protein_coding MGP_AJ_T0066005.1 MGP_AJ_G0028315.1 mouse_genomes_project 4 59235213 59253084 + MGP_AJ_P0066005 Bspry protein_coding protein_coding MGP_AJ_T0066006.1 MGP_AJ_G0028315.1 mouse_genomes_project 4 59235249 59241578 + MGP_AJ_P0066006 Bspry protein_coding nonsense_mediated_decay MGP_AJ_T0014627.1 MGP_AJ_G0012722.1 mouse_genomes_project 4 79834562 79834763 + processed_pseudogene processed_pseudogene MGP_AJ_T0065454.1 MGP_AJ_G0028173.1 mouse_genomes_project 4 40274941 40295180 + MGP_AJ_P0065454 Npr2 protein_coding protein_coding MGP_AJ_T0065455.1 MGP_AJ_G0028173.1 mouse_genomes_project 4 40275191 40295180 + MGP_AJ_P0065455 Npr2 protein_coding protein_coding MGP_AJ_T0065456.1 MGP_AJ_G0028173.1 mouse_genomes_project 4 40285036 40295180 + Npr2 protein_coding processed_transcript MGP_AJ_T0065457.1 MGP_AJ_G0028173.1 mouse_genomes_project 4 40285175 40287020 + Npr2 protein_coding processed_transcript MGP_AJ_T0065458.1 MGP_AJ_G0028173.1 mouse_genomes_project 4 40285182 40288308 + MGP_AJ_P0065458 Npr2 protein_coding protein_coding MGP_AJ_T0065459.1 MGP_AJ_G0028173.1 mouse_genomes_project 4 40285204 40295180 + MGP_AJ_P0065459 Npr2 protein_coding protein_coding MGP_AJ_T0065460.1 MGP_AJ_G0028173.1 mouse_genomes_project 4 40288064 40292107 + Npr2 protein_coding processed_transcript MGP_AJ_T0065461.1 MGP_AJ_G0028173.1 mouse_genomes_project 4 40290488 40294245 + Npr2 protein_coding processed_transcript MGP_AJ_T0065462.1 MGP_AJ_G0028173.1 mouse_genomes_project 4 40291125 40292334 + Npr2 protein_coding processed_transcript MGP_AJ_T0065463.1 MGP_AJ_G0028173.1 mouse_genomes_project 4 40291933 40294166 + Npr2 protein_coding processed_transcript MGP_AJ_T0066300.1 MGP_AJ_G0028377.1 mouse_genomes_project 4 83683332 83725571 + MGP_AJ_P0066300 Acer2 protein_coding protein_coding MGP_AJ_T0066301.1 MGP_AJ_G0028377.1 mouse_genomes_project 4 83683350 83736757 + Acer2 protein_coding processed_transcript MGP_AJ_T0066302.1 MGP_AJ_G0028377.1 mouse_genomes_project 4 83683350 83725571 + MGP_AJ_P0066302 Acer2 protein_coding protein_coding MGP_AJ_T0066303.1 MGP_AJ_G0028377.1 mouse_genomes_project 4 83734223 83739087 + Acer2 protein_coding processed_transcript MGP_AJ_T0007941.1 MGP_AJ_G0006489.1 mouse_genomes_project 4 115449004 115449830 - Gm12862 lincRNA lincRNA MGP_AJ_T0064915.1 MGP_AJ_G0028058.1 mouse_genomes_project 4 21368187 21375074 + MGP_AJ_P0064915 Ndufaf4 protein_coding protein_coding MGP_AJ_T0064916.1 MGP_AJ_G0028058.1 mouse_genomes_project 4 21368235 21373578 + Ndufaf4 protein_coding processed_transcript MGP_AJ_T0064917.1 MGP_AJ_G0028058.1 mouse_genomes_project 4 21368280 21373558 + MGP_AJ_P0064917 Ndufaf4 protein_coding protein_coding MGP_AJ_T0065890.1 MGP_AJ_G0028283.1 mouse_genomes_project 4 54642632 54672366 - Txndc8 protein_coding processed_transcript MGP_AJ_T0065891.1 MGP_AJ_G0028283.1 mouse_genomes_project 4 54642632 54672465 - MGP_AJ_P0065891 Txndc8 protein_coding protein_coding MGP_AJ_T0065892.1 MGP_AJ_G0028283.1 mouse_genomes_project 4 54642634 54659484 - MGP_AJ_P0065892 Txndc8 protein_coding protein_coding MGP_AJ_T0065133.1 MGP_AJ_G0028113.1 mouse_genomes_project 4 37559873 37569947 - MGP_AJ_P0065133 Nol6 protein_coding protein_coding MGP_AJ_T0065134.1 MGP_AJ_G0028113.1 mouse_genomes_project 4 37566777 37568746 - Nol6 protein_coding processed_transcript MGP_AJ_T0065135.1 MGP_AJ_G0028113.1 mouse_genomes_project 4 37566993 37568981 - Nol6 protein_coding processed_transcript MGP_AJ_T0065136.1 MGP_AJ_G0028113.1 mouse_genomes_project 4 37567325 37568201 - Nol6 protein_coding processed_transcript MGP_AJ_T0065087.1 MGP_AJ_G0028100.1 mouse_genomes_project 4 36702688 36712939 - MGP_AJ_P0065087 Topors protein_coding protein_coding MGP_AJ_T0014549.1 MGP_AJ_G0012644.1 mouse_genomes_project 4 49125347 49125653 - processed_pseudogene processed_pseudogene MGP_AJ_T0067496.1 MGP_AJ_G0028646.1 mouse_genomes_project 4 115408367 115415722 + MGP_AJ_P0067496 Lao1 protein_coding protein_coding MGP_AJ_T0067497.1 MGP_AJ_G0028646.1 mouse_genomes_project 4 115412184 115414893 + Lao1 protein_coding processed_transcript MGP_AJ_T0067379.1 MGP_AJ_G0028616.1 mouse_genomes_project 4 114252283 114260393 + MGP_AJ_P0067379 Slc6a9 protein_coding protein_coding MGP_AJ_T0067380.1 MGP_AJ_G0028616.1 mouse_genomes_project 4 114252621 114292496 + MGP_AJ_P0067380 Slc6a9 protein_coding nonsense_mediated_decay MGP_AJ_T0067381.1 MGP_AJ_G0028616.1 mouse_genomes_project 4 114252664 114286597 + MGP_AJ_P0067381 Slc6a9 protein_coding protein_coding MGP_AJ_T0067382.1 MGP_AJ_G0028616.1 mouse_genomes_project 4 114252726 114274474 + Slc6a9 protein_coding processed_transcript MGP_AJ_T0067383.1 MGP_AJ_G0028616.1 mouse_genomes_project 4 114266484 114281307 + MGP_AJ_P0067383 Slc6a9 protein_coding protein_coding MGP_AJ_T0067384.1 MGP_AJ_G0028616.1 mouse_genomes_project 4 114266490 114281307 + MGP_AJ_P0067384 Slc6a9 protein_coding protein_coding MGP_AJ_T0067385.1 MGP_AJ_G0028616.1 mouse_genomes_project 4 114266661 114285725 + MGP_AJ_P0067385 Slc6a9 protein_coding protein_coding MGP_AJ_T0067386.1 MGP_AJ_G0028616.1 mouse_genomes_project 4 114272782 114274730 + MGP_AJ_P0067386 Slc6a9 protein_coding protein_coding MGP_AJ_T0067387.1 MGP_AJ_G0028616.1 mouse_genomes_project 4 114272834 114273318 + Slc6a9 protein_coding processed_transcript MGP_AJ_T0067401.1 MGP_AJ_G0028616.1 mouse_genomes_project 4 114291385 114292498 + Slc6a9 protein_coding retained_intron MGP_AJ_T0008000.1 MGP_AJ_G0006526.1 mouse_genomes_project 4 131728574 131730801 - Gm16225 lincRNA lincRNA MGP_AJ_T0066652.1 MGP_AJ_G0028469.1 mouse_genomes_project 4 99970937 100016038 - MGP_AJ_P0066652 Slc35d1 protein_coding protein_coding MGP_AJ_T0066653.1 MGP_AJ_G0028469.1 mouse_genomes_project 4 99970944 100015677 - MGP_AJ_P0066653 Slc35d1 protein_coding protein_coding MGP_AJ_T0066654.1 MGP_AJ_G0028469.1 mouse_genomes_project 4 100001460 100015677 - MGP_AJ_P0066654 Slc35d1 protein_coding nonsense_mediated_decay MGP_AJ_T0066655.1 MGP_AJ_G0028469.1 mouse_genomes_project 4 100011207 100015673 - Slc35d1 protein_coding retained_intron MGP_AJ_T0066656.1 MGP_AJ_G0028469.1 mouse_genomes_project 4 100011428 100015546 - Slc35d1 protein_coding retained_intron MGP_AJ_T0008014.1 MGP_AJ_G0006537.1 mouse_genomes_project 4 136657248 136675089 - 4933427I22Rik lincRNA lincRNA MGP_AJ_T0008015.1 MGP_AJ_G0006537.1 mouse_genomes_project 4 136657820 136664063 - 4933427I22Rik lincRNA lincRNA MGP_AJ_T0064817.1 MGP_AJ_G0028033.1 mouse_genomes_project 4 12547765 12564494 - MGP_AJ_P0064817 Osgin2 protein_coding protein_coding MGP_AJ_T0064818.1 MGP_AJ_G0028033.1 mouse_genomes_project 4 12547871 12552729 - Osgin2 protein_coding processed_transcript MGP_AJ_T0064819.1 MGP_AJ_G0028033.1 mouse_genomes_project 4 12552571 12564402 - MGP_AJ_P0064819 Osgin2 protein_coding protein_coding MGP_AJ_T0064820.1 MGP_AJ_G0028033.1 mouse_genomes_project 4 12553151 12564427 - Osgin2 protein_coding processed_transcript MGP_AJ_T0064821.1 MGP_AJ_G0028033.1 mouse_genomes_project 4 12555496 12557011 - Osgin2 protein_coding processed_transcript MGP_AJ_T0014801.1 MGP_AJ_G0012896.1 mouse_genomes_project 4 133221825 133222314 - processed_pseudogene processed_pseudogene MGP_AJ_T0067523.1 MGP_AJ_G0028653.1 mouse_genomes_project 4 115686410 115702479 + MGP_AJ_P0067523 P3h1 protein_coding protein_coding MGP_AJ_T0067524.1 MGP_AJ_G0028653.1 mouse_genomes_project 4 115686434 115702482 + MGP_AJ_P0067524 P3h1 protein_coding protein_coding MGP_AJ_T0067525.1 MGP_AJ_G0028653.1 mouse_genomes_project 4 115686441 115701874 + P3h1 protein_coding processed_transcript MGP_AJ_T0067526.1 MGP_AJ_G0028653.1 mouse_genomes_project 4 115686441 115702479 + MGP_AJ_P0067526 P3h1 protein_coding protein_coding MGP_AJ_T0067527.1 MGP_AJ_G0028653.1 mouse_genomes_project 4 115686449 115701876 + MGP_AJ_P0067527 P3h1 protein_coding nonsense_mediated_decay MGP_AJ_T0067528.1 MGP_AJ_G0028653.1 mouse_genomes_project 4 115687295 115690435 + P3h1 protein_coding processed_transcript MGP_AJ_T0067529.1 MGP_AJ_G0028653.1 mouse_genomes_project 4 115687327 115702480 + MGP_AJ_P0067529 P3h1 protein_coding protein_coding MGP_AJ_T0067530.1 MGP_AJ_G0028653.1 mouse_genomes_project 4 115688839 115695002 + P3h1 protein_coding processed_transcript MGP_AJ_T0067531.1 MGP_AJ_G0028653.1 mouse_genomes_project 4 115691444 115697656 + P3h1 protein_coding processed_transcript MGP_AJ_T0067532.1 MGP_AJ_G0028653.1 mouse_genomes_project 4 115698530 115701640 + P3h1 protein_coding processed_transcript MGP_AJ_T0067533.1 MGP_AJ_G0028653.1 mouse_genomes_project 4 115700145 115701879 + P3h1 protein_coding processed_transcript MGP_AJ_T0067534.1 MGP_AJ_G0028653.1 mouse_genomes_project 4 115700368 115701561 + P3h1 protein_coding retained_intron MGP_AJ_T0010623.1 MGP_AJ_G0008745.1 mouse_genomes_project 4 128771011 128771101 - Gm22033 miRNA miRNA MGP_AJ_T0014518.1 MGP_AJ_G0012613.1 mouse_genomes_project 4 37118279 37118726 + processed_pseudogene processed_pseudogene MGP_AJ_T0068851.1 MGP_AJ_G0028949.1 mouse_genomes_project 4 134914852 134943178 + MGP_AJ_P0068851 Hp1bp3 protein_coding protein_coding MGP_AJ_T0068852.1 MGP_AJ_G0028949.1 mouse_genomes_project 4 134915093 134943181 + MGP_AJ_P0068852 Hp1bp3 protein_coding protein_coding MGP_AJ_T0068853.1 MGP_AJ_G0028949.1 mouse_genomes_project 4 134915156 134920240 + Hp1bp3 protein_coding processed_transcript MGP_AJ_T0068854.1 MGP_AJ_G0028949.1 mouse_genomes_project 4 134915182 134924736 + MGP_AJ_P0068854 Hp1bp3 protein_coding protein_coding MGP_AJ_T0068855.1 MGP_AJ_G0028949.1 mouse_genomes_project 4 134915183 134941643 + MGP_AJ_P0068855 Hp1bp3 protein_coding protein_coding MGP_AJ_T0068856.1 MGP_AJ_G0028949.1 mouse_genomes_project 4 134915190 134927473 + MGP_AJ_P0068856 Hp1bp3 protein_coding protein_coding MGP_AJ_T0068857.1 MGP_AJ_G0028949.1 mouse_genomes_project 4 134915191 134943178 + MGP_AJ_P0068857 Hp1bp3 protein_coding protein_coding MGP_AJ_T0068858.1 MGP_AJ_G0028949.1 mouse_genomes_project 4 134915683 134928447 + MGP_AJ_P0068858 Hp1bp3 protein_coding protein_coding MGP_AJ_T0068859.1 MGP_AJ_G0028949.1 mouse_genomes_project 4 134915830 134928434 + Hp1bp3 protein_coding retained_intron MGP_AJ_T0068860.1 MGP_AJ_G0028949.1 mouse_genomes_project 4 134915856 134922119 + MGP_AJ_P0068860 Hp1bp3 protein_coding protein_coding MGP_AJ_T0068861.1 MGP_AJ_G0028949.1 mouse_genomes_project 4 134927280 134939234 + MGP_AJ_P0068861 Hp1bp3 protein_coding protein_coding MGP_AJ_T0068862.1 MGP_AJ_G0028949.1 mouse_genomes_project 4 134928346 134933106 + Hp1bp3 protein_coding processed_transcript MGP_AJ_T0066453.1 MGP_AJ_G0028428.1 mouse_genomes_project 4 93263289 93286344 - MGP_AJ_P0066453 Cyp2j9 protein_coding protein_coding MGP_AJ_T0066454.1 MGP_AJ_G0028428.1 mouse_genomes_project 4 93271059 93286344 - Cyp2j9 protein_coding retained_intron MGP_AJ_T0101199.1 MGP_AJ_G0039165.1 mouse_genomes_project 4 36909069 36909164 - Gm23338 snoRNA snoRNA MGP_AJ_T0014573.1 MGP_AJ_G0012668.1 mouse_genomes_project 4 55738176 55738921 + processed_pseudogene processed_pseudogene MGP_AJ_T0069960.1 MGP_AJ_G0029204.1 mouse_genomes_project 4 153551139 153567975 + MGP_AJ_P0069960 protein_coding protein_coding MGP_AJ_T0069961.1 MGP_AJ_G0029204.1 mouse_genomes_project 4 153551139 153570163 + MGP_AJ_P0069961 protein_coding protein_coding MGP_AJ_T0069962.1 MGP_AJ_G0029204.1 mouse_genomes_project 4 153551158 153570163 + MGP_AJ_P0069962 protein_coding protein_coding MGP_AJ_T0069963.1 MGP_AJ_G0029204.1 mouse_genomes_project 4 153551169 153558902 + MGP_AJ_P0069963 protein_coding protein_coding MGP_AJ_T0069964.1 MGP_AJ_G0029204.1 mouse_genomes_project 4 153551177 153567975 + MGP_AJ_P0069964 protein_coding protein_coding MGP_AJ_T0069965.1 MGP_AJ_G0029204.1 mouse_genomes_project 4 153551218 153567360 + MGP_AJ_P0069965 protein_coding protein_coding MGP_AJ_T0069966.1 MGP_AJ_G0029204.1 mouse_genomes_project 4 153551300 153567829 + MGP_AJ_P0069966 protein_coding protein_coding MGP_AJ_T0069967.1 MGP_AJ_G0029204.1 mouse_genomes_project 4 153551308 153561466 + protein_coding retained_intron MGP_AJ_T0069968.1 MGP_AJ_G0029204.1 mouse_genomes_project 4 153551474 153567978 + MGP_AJ_P0069968 protein_coding protein_coding MGP_AJ_T0069969.1 MGP_AJ_G0029204.1 mouse_genomes_project 4 153551474 153567975 + MGP_AJ_P0069969 protein_coding protein_coding MGP_AJ_T0069970.1 MGP_AJ_G0029204.1 mouse_genomes_project 4 153565102 153566655 + protein_coding retained_intron MGP_AJ_T0069971.1 MGP_AJ_G0029204.1 mouse_genomes_project 4 153566264 153567746 + protein_coding processed_transcript MGP_AJ_T0067745.1 MGP_AJ_G0028711.1 mouse_genomes_project 4 121309572 121328950 + MGP_AJ_P0067745 Sf3a3 protein_coding protein_coding MGP_AJ_T0067746.1 MGP_AJ_G0028711.1 mouse_genomes_project 4 121309679 121314535 + Sf3a3 protein_coding processed_transcript MGP_AJ_T0067747.1 MGP_AJ_G0028711.1 mouse_genomes_project 4 121317552 121319203 + Sf3a3 protein_coding processed_transcript MGP_AJ_T0007884.1 MGP_AJ_G0006444.1 mouse_genomes_project 4 78799242 78801117 + Gm5860 lincRNA lincRNA MGP_AJ_T0007885.1 MGP_AJ_G0006444.1 mouse_genomes_project 4 78799326 78840274 + Gm5860 lincRNA lincRNA MGP_AJ_T0066973.1 MGP_AJ_G0028531.1 mouse_genomes_project 4 106031136 106066855 + MGP_AJ_P0066973 Calr4 protein_coding protein_coding MGP_AJ_T0066974.1 MGP_AJ_G0028531.1 mouse_genomes_project 4 106047573 106067105 + MGP_AJ_P0066974 Calr4 protein_coding protein_coding MGP_AJ_T0066975.1 MGP_AJ_G0028531.1 mouse_genomes_project 4 106048720 106067105 + MGP_AJ_P0066975 Calr4 protein_coding protein_coding MGP_AJ_T0066976.1 MGP_AJ_G0028531.1 mouse_genomes_project 4 106057672 106066677 + Calr4 protein_coding processed_transcript MGP_AJ_T0066691.1 MGP_AJ_G0028483.1 mouse_genomes_project 4 103365093 103393864 + MGP_AJ_P0066691 Dhcr24 protein_coding protein_coding MGP_AJ_T0014709.1 MGP_AJ_G0012804.1 mouse_genomes_project 4 106425997 106427141 + processed_pseudogene processed_pseudogene MGP_AJ_T0066345.1 MGP_AJ_G0028391.1 mouse_genomes_project 4 85473011 85474994 - MGP_AJ_P0066345 Ifnab protein_coding protein_coding MGP_AJ_T0014665.1 MGP_AJ_G0012760.1 mouse_genomes_project 4 94264444 94265111 - processed_pseudogene processed_pseudogene MGP_AJ_T0069205.1 MGP_AJ_G0029057.1 mouse_genomes_project 4 141475154 141491913 - MGP_AJ_P0069205 Pramef12 protein_coding protein_coding MGP_AJ_T0069206.1 MGP_AJ_G0029057.1 mouse_genomes_project 4 141478539 141491866 - MGP_AJ_P0069206 Pramef12 protein_coding protein_coding MGP_AJ_T0067945.1 MGP_AJ_G0028758.1 mouse_genomes_project 4 124014791 124018164 - MGP_AJ_P0067945 Gjb5 protein_coding protein_coding MGP_AJ_T0065056.1 MGP_AJ_G0028095.1 mouse_genomes_project 4 31612311 31645819 - MGP_AJ_P0065056 3110043O21Rik protein_coding protein_coding MGP_AJ_T0065057.1 MGP_AJ_G0028095.1 mouse_genomes_project 4 31612316 31646106 - MGP_AJ_P0065057 3110043O21Rik protein_coding protein_coding MGP_AJ_T0065058.1 MGP_AJ_G0028095.1 mouse_genomes_project 4 31618133 31627247 - 3110043O21Rik protein_coding retained_intron MGP_AJ_T0065059.1 MGP_AJ_G0028095.1 mouse_genomes_project 4 31632218 31646158 - 3110043O21Rik protein_coding retained_intron MGP_AJ_T0065060.1 MGP_AJ_G0028095.1 mouse_genomes_project 4 31638371 31646106 - 3110043O21Rik protein_coding processed_transcript MGP_AJ_T0065061.1 MGP_AJ_G0028095.1 mouse_genomes_project 4 31638555 31646106 - 3110043O21Rik protein_coding processed_transcript MGP_AJ_T0070019.1 MGP_AJ_G0029217.1 mouse_genomes_project 4 153835137 153840855 - MGP_AJ_P0070019 Klhl17 protein_coding protein_coding MGP_AJ_T0065154.1 MGP_AJ_G0028118.1 mouse_genomes_project 4 37839721 37908869 - MGP_AJ_P0065154 Kif24 protein_coding protein_coding MGP_AJ_T0065155.1 MGP_AJ_G0028118.1 mouse_genomes_project 4 37840587 37908877 - MGP_AJ_P0065155 Kif24 protein_coding protein_coding MGP_AJ_T0065156.1 MGP_AJ_G0028118.1 mouse_genomes_project 4 37844161 37859196 - Kif24 protein_coding processed_transcript MGP_AJ_T0065157.1 MGP_AJ_G0028118.1 mouse_genomes_project 4 37852885 37854371 - Kif24 protein_coding processed_transcript MGP_AJ_T0065158.1 MGP_AJ_G0028118.1 mouse_genomes_project 4 37862965 37908869 - Kif24 protein_coding processed_transcript MGP_AJ_T0065159.1 MGP_AJ_G0028118.1 mouse_genomes_project 4 37877919 37908875 - MGP_AJ_P0065159 Kif24 protein_coding protein_coding MGP_AJ_T0065160.1 MGP_AJ_G0028118.1 mouse_genomes_project 4 37896627 37908875 - Kif24 protein_coding processed_transcript MGP_AJ_T0014536.1 MGP_AJ_G0012631.1 mouse_genomes_project 4 45436108 45436444 - processed_pseudogene processed_pseudogene MGP_AJ_T0008013.1 MGP_AJ_G0006536.1 mouse_genomes_project 4 136654486 136664159 + Gm13028 lincRNA lincRNA MGP_AJ_T0007923.1 MGP_AJ_G0006476.1 mouse_genomes_project 4 103302730 103310243 - Tmem61 lincRNA lincRNA MGP_AJ_T0007924.1 MGP_AJ_G0006476.1 mouse_genomes_project 4 103302962 103307020 - Tmem61 lincRNA lincRNA MGP_AJ_T0007872.1 MGP_AJ_G0006432.1 mouse_genomes_project 4 59479507 59483529 - Gm11211 lincRNA lincRNA MGP_AJ_T0014557.1 MGP_AJ_G0012652.1 mouse_genomes_project 4 50876051 50876258 - processed_pseudogene processed_pseudogene MGP_AJ_T0065571.1 MGP_AJ_G0028196.1 mouse_genomes_project 4 41684121 41699230 + MGP_AJ_P0065571 Polr1e protein_coding protein_coding MGP_AJ_T0065572.1 MGP_AJ_G0028196.1 mouse_genomes_project 4 41684200 41697903 + MGP_AJ_P0065572 Polr1e protein_coding protein_coding MGP_AJ_T0065573.1 MGP_AJ_G0028196.1 mouse_genomes_project 4 41684201 41702103 + MGP_AJ_P0065573 Polr1e protein_coding protein_coding MGP_AJ_T0065574.1 MGP_AJ_G0028196.1 mouse_genomes_project 4 41684235 41692409 + Polr1e protein_coding processed_transcript MGP_AJ_T0065575.1 MGP_AJ_G0028196.1 mouse_genomes_project 4 41684773 41697650 + MGP_AJ_P0065575 Polr1e protein_coding protein_coding MGP_AJ_T0065576.1 MGP_AJ_G0028196.1 mouse_genomes_project 4 41694682 41696923 + Polr1e protein_coding processed_transcript MGP_AJ_T0065577.1 MGP_AJ_G0028196.1 mouse_genomes_project 4 41696800 41697898 + Polr1e protein_coding processed_transcript MGP_AJ_T0068327.1 MGP_AJ_G0028831.1 mouse_genomes_project 4 129054621 129072757 - MGP_AJ_P0068327 Sesn2 protein_coding protein_coding MGP_AJ_T0065727.1 MGP_AJ_G0028233.1 mouse_genomes_project 4 45017726 45019953 - MGP_AJ_P0065727 protein_coding protein_coding MGP_AJ_T0004453.1 MGP_AJ_G0003877.1 mouse_genomes_project 4 41907464 41916781 - Frmpd1os antisense antisense MGP_AJ_T0008041.1 MGP_AJ_G0006563.1 mouse_genomes_project 4 153387926 153394135 + Gm26840 lincRNA lincRNA MGP_AJ_T0069991.1 MGP_AJ_G0029210.1 mouse_genomes_project 4 153644539 153662244 - MGP_AJ_P0069991 Ttll10 protein_coding protein_coding MGP_AJ_T0069992.1 MGP_AJ_G0029210.1 mouse_genomes_project 4 153644612 153670853 - MGP_AJ_P0069992 Ttll10 protein_coding protein_coding MGP_AJ_T0069993.1 MGP_AJ_G0029210.1 mouse_genomes_project 4 153644999 153661891 - MGP_AJ_P0069993 Ttll10 protein_coding protein_coding MGP_AJ_T0069994.1 MGP_AJ_G0029210.1 mouse_genomes_project 4 153645504 153655416 - Ttll10 protein_coding processed_transcript MGP_AJ_T0069995.1 MGP_AJ_G0029210.1 mouse_genomes_project 4 153653758 153670780 - Ttll10 protein_coding retained_intron MGP_AJ_T0069996.1 MGP_AJ_G0029210.1 mouse_genomes_project 4 153654491 153656276 - Ttll10 protein_coding processed_transcript MGP_AJ_T0069997.1 MGP_AJ_G0029210.1 mouse_genomes_project 4 153654501 153659401 - Ttll10 protein_coding processed_transcript MGP_AJ_T0069998.1 MGP_AJ_G0029210.1 mouse_genomes_project 4 153658215 153659369 - Ttll10 protein_coding retained_intron MGP_AJ_T0007879.1 MGP_AJ_G0006439.1 mouse_genomes_project 4 67868003 67923167 - Gm11228 lincRNA lincRNA MGP_AJ_T0069116.1 MGP_AJ_G0029016.1 mouse_genomes_project 4 138527200 138543064 + MGP_AJ_P0069116 Agmat protein_coding protein_coding MGP_AJ_T0004432.1 MGP_AJ_G0003860.1 mouse_genomes_project 4 21259078 21266696 + Gm11899 antisense antisense MGP_AJ_T0014752.1 MGP_AJ_G0012847.1 mouse_genomes_project 4 118100036 118100368 + processed_pseudogene processed_pseudogene MGP_AJ_T0004523.1 MGP_AJ_G0003929.1 mouse_genomes_project 4 115587558 115592606 - Gm12868 antisense antisense MGP_AJ_T0014418.1 MGP_AJ_G0012513.1 mouse_genomes_project 4 10735900 10737118 + processed_pseudogene processed_pseudogene MGP_AJ_T0102610.1 MGP_AJ_G0040352.1 mouse_genomes_project 4 117863998 117867555 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0066898.1 MGP_AJ_G0028518.1 mouse_genomes_project 4 105268671 105368692 + MGP_AJ_P0066898 Zcchc11 protein_coding protein_coding MGP_AJ_T0066899.1 MGP_AJ_G0028518.1 mouse_genomes_project 4 105268671 105288613 + MGP_AJ_P0066899 Zcchc11 protein_coding protein_coding MGP_AJ_T0066900.1 MGP_AJ_G0028518.1 mouse_genomes_project 4 105269255 105368698 + MGP_AJ_P0066900 Zcchc11 protein_coding protein_coding MGP_AJ_T0066901.1 MGP_AJ_G0028518.1 mouse_genomes_project 4 105288540 105333949 + MGP_AJ_P0066901 Zcchc11 protein_coding protein_coding MGP_AJ_T0066902.1 MGP_AJ_G0028518.1 mouse_genomes_project 4 105336077 105338940 + Zcchc11 protein_coding processed_transcript MGP_AJ_T0066903.1 MGP_AJ_G0028518.1 mouse_genomes_project 4 105351892 105357919 + Zcchc11 protein_coding processed_transcript MGP_AJ_T0066904.1 MGP_AJ_G0028518.1 mouse_genomes_project 4 105351991 105352859 + Zcchc11 protein_coding processed_transcript MGP_AJ_T0066905.1 MGP_AJ_G0028518.1 mouse_genomes_project 4 105352044 105352852 + Zcchc11 protein_coding processed_transcript MGP_AJ_T0066906.1 MGP_AJ_G0028518.1 mouse_genomes_project 4 105358717 105364710 + Zcchc11 protein_coding processed_transcript MGP_AJ_T0066907.1 MGP_AJ_G0028518.1 mouse_genomes_project 4 105364726 105368692 + Zcchc11 protein_coding processed_transcript MGP_AJ_T0066908.1 MGP_AJ_G0028518.1 mouse_genomes_project 4 105365010 105368330 + MGP_AJ_P0066908 Zcchc11 protein_coding protein_coding MGP_AJ_T0065517.1 MGP_AJ_G0028190.1 mouse_genomes_project 4 40774735 40815593 - MGP_AJ_P0065517 Rnf38 protein_coding protein_coding MGP_AJ_T0065518.1 MGP_AJ_G0028190.1 mouse_genomes_project 4 40774738 40815311 - MGP_AJ_P0065518 Rnf38 protein_coding protein_coding MGP_AJ_T0065519.1 MGP_AJ_G0028190.1 mouse_genomes_project 4 40777945 40806928 - MGP_AJ_P0065519 Rnf38 protein_coding protein_coding MGP_AJ_T0065520.1 MGP_AJ_G0028190.1 mouse_genomes_project 4 40777949 40815633 - MGP_AJ_P0065520 Rnf38 protein_coding nonsense_mediated_decay MGP_AJ_T0065521.1 MGP_AJ_G0028190.1 mouse_genomes_project 4 40778031 40787482 - Rnf38 protein_coding processed_transcript MGP_AJ_T0065522.1 MGP_AJ_G0028190.1 mouse_genomes_project 4 40778033 40787361 - Rnf38 protein_coding processed_transcript MGP_AJ_T0065523.1 MGP_AJ_G0028190.1 mouse_genomes_project 4 40789159 40816714 - MGP_AJ_P0065523 Rnf38 protein_coding protein_coding MGP_AJ_T0065524.1 MGP_AJ_G0028190.1 mouse_genomes_project 4 40789213 40807039 - MGP_AJ_P0065524 Rnf38 protein_coding protein_coding MGP_AJ_T0065525.1 MGP_AJ_G0028190.1 mouse_genomes_project 4 40789257 40815990 - MGP_AJ_P0065525 Rnf38 protein_coding protein_coding MGP_AJ_T0065526.1 MGP_AJ_G0028190.1 mouse_genomes_project 4 40796324 40815520 - Rnf38 protein_coding processed_transcript MGP_AJ_T0065527.1 MGP_AJ_G0028190.1 mouse_genomes_project 4 40796331 40877096 - Rnf38 protein_coding processed_transcript MGP_AJ_T0065528.1 MGP_AJ_G0028190.1 mouse_genomes_project 4 40796360 40815907 - Rnf38 protein_coding processed_transcript MGP_AJ_T0065529.1 MGP_AJ_G0028190.1 mouse_genomes_project 4 40806957 40815477 - Rnf38 protein_coding processed_transcript MGP_AJ_T0101194.1 MGP_AJ_G0039160.1 mouse_genomes_project 4 24847637 24847766 + Gm25378 snoRNA snoRNA MGP_AJ_T0067980.1 MGP_AJ_G0028767.1 mouse_genomes_project 4 125554291 125574269 + MGP_AJ_P0067980 Trim62 protein_coding nonsense_mediated_decay MGP_AJ_T0067981.1 MGP_AJ_G0028767.1 mouse_genomes_project 4 125554299 125582721 + MGP_AJ_P0067981 Trim62 protein_coding protein_coding MGP_AJ_T0014821.1 MGP_AJ_G0012916.1 mouse_genomes_project 4 141655461 141658472 - processed_pseudogene processed_pseudogene MGP_AJ_T0067486.1 MGP_AJ_G0028637.1 mouse_genomes_project 4 115105509 115106484 - MGP_AJ_P0067486 Olfr1342 protein_coding protein_coding MGP_AJ_T0007906.1 MGP_AJ_G0006462.1 mouse_genomes_project 4 95917059 95932293 - Gm12681 lincRNA lincRNA MGP_AJ_T0066354.1 MGP_AJ_G0028400.1 mouse_genomes_project 4 85674029 85674527 - MGP_AJ_P0066354 4930553M12Rik protein_coding protein_coding MGP_AJ_T0069156.1 MGP_AJ_G0029026.1 mouse_genomes_project 4 140101394 140134909 - MGP_AJ_P0069156 Pdpn protein_coding protein_coding MGP_AJ_T0069157.1 MGP_AJ_G0029026.1 mouse_genomes_project 4 140102309 140134808 - MGP_AJ_P0069157 Pdpn protein_coding protein_coding MGP_AJ_T0066361.1 MGP_AJ_G0028405.1 mouse_genomes_project 4 86481873 86494330 + Dmrta1 protein_coding processed_transcript MGP_AJ_T0066362.1 MGP_AJ_G0028405.1 mouse_genomes_project 4 86490634 86497183 + MGP_AJ_P0066362 Dmrta1 protein_coding protein_coding MGP_AJ_T0014646.1 MGP_AJ_G0012741.1 mouse_genomes_project 4 87171918 87172910 + processed_pseudogene processed_pseudogene MGP_AJ_T0010578.1 MGP_AJ_G0008700.1 mouse_genomes_project 4 29852949 29853078 + Mir8118 miRNA miRNA MGP_AJ_T0065182.1 MGP_AJ_G0028125.1 mouse_genomes_project 4 38103863 38148471 - MGP_AJ_P0065182 Cntfr protein_coding protein_coding MGP_AJ_T0065183.1 MGP_AJ_G0028125.1 mouse_genomes_project 4 38103863 38150078 - MGP_AJ_P0065183 Cntfr protein_coding protein_coding MGP_AJ_T0065184.1 MGP_AJ_G0028125.1 mouse_genomes_project 4 38109636 38110404 - Cntfr protein_coding processed_transcript MGP_AJ_T0065185.1 MGP_AJ_G0028125.1 mouse_genomes_project 4 38117443 38148474 - MGP_AJ_P0065185 Cntfr protein_coding protein_coding MGP_AJ_T0065186.1 MGP_AJ_G0028125.1 mouse_genomes_project 4 38117443 38150121 - MGP_AJ_P0065186 Cntfr protein_coding protein_coding MGP_AJ_T0065187.1 MGP_AJ_G0028125.1 mouse_genomes_project 4 38118751 38148964 - MGP_AJ_P0065187 Cntfr protein_coding protein_coding MGP_AJ_T0069198.1 MGP_AJ_G0029051.1 mouse_genomes_project 4 141402945 141407092 + MGP_AJ_P0069198 protein_coding protein_coding MGP_AJ_T0064746.1 MGP_AJ_G0028011.1 mouse_genomes_project 4 8097961 8133796 + Rad54b protein_coding processed_transcript MGP_AJ_T0064747.1 MGP_AJ_G0028011.1 mouse_genomes_project 4 8097981 8125910 + MGP_AJ_P0064747 Rad54b protein_coding protein_coding MGP_AJ_T0064748.1 MGP_AJ_G0028011.1 mouse_genomes_project 4 8097988 8119125 + MGP_AJ_P0064748 Rad54b protein_coding protein_coding MGP_AJ_T0064749.1 MGP_AJ_G0028011.1 mouse_genomes_project 4 8098011 8157228 + MGP_AJ_P0064749 Rad54b protein_coding protein_coding MGP_AJ_T0064750.1 MGP_AJ_G0028011.1 mouse_genomes_project 4 8116810 8135927 + Rad54b protein_coding processed_transcript MGP_AJ_T0064752.1 MGP_AJ_G0028011.1 mouse_genomes_project 4 8136026 8147585 + MGP_AJ_P0064752 Rad54b protein_coding nonsense_mediated_decay MGP_AJ_T0064753.1 MGP_AJ_G0028011.1 mouse_genomes_project 4 8150815 8152204 + Rad54b protein_coding retained_intron MGP_AJ_T0004429.1 MGP_AJ_G0003857.1 mouse_genomes_project 4 11551225 11567380 + antisense antisense MGP_AJ_T0066320.1 MGP_AJ_G0028380.1 mouse_genomes_project 4 84895038 84922835 + Focad protein_coding retained_intron MGP_AJ_T0066321.1 MGP_AJ_G0028380.1 mouse_genomes_project 4 84895039 85202121 + MGP_AJ_P0066321 Focad protein_coding protein_coding MGP_AJ_T0066322.1 MGP_AJ_G0028380.1 mouse_genomes_project 4 84895054 84983710 + Focad protein_coding retained_intron MGP_AJ_T0066323.1 MGP_AJ_G0028380.1 mouse_genomes_project 4 84922321 85202119 + MGP_AJ_P0066323 Focad protein_coding protein_coding MGP_AJ_T0066324.1 MGP_AJ_G0028380.1 mouse_genomes_project 4 84925838 84953861 + Focad protein_coding retained_intron MGP_AJ_T0066325.1 MGP_AJ_G0028380.1 mouse_genomes_project 4 85099619 85125807 + Focad protein_coding retained_intron MGP_AJ_T0066326.1 MGP_AJ_G0028380.1 mouse_genomes_project 4 85144657 85202124 + Focad protein_coding retained_intron MGP_AJ_T0066328.1 MGP_AJ_G0028380.1 mouse_genomes_project 4 85190998 85198334 + Focad protein_coding processed_transcript MGP_AJ_T0066329.1 MGP_AJ_G0028380.1 mouse_genomes_project 4 85191213 85202126 + MGP_AJ_P0066329 Focad protein_coding protein_coding MGP_AJ_T0099928.1 MGP_AJ_G0037894.1 mouse_genomes_project 4 82764289 82764390 - Gm25811 snRNA snRNA MGP_AJ_T0068035.1 MGP_AJ_G0028776.1 mouse_genomes_project 4 125893041 125901375 - MGP_AJ_P0068035 C77080 protein_coding protein_coding MGP_AJ_T0068036.1 MGP_AJ_G0028776.1 mouse_genomes_project 4 125893041 125913410 - MGP_AJ_P0068036 C77080 protein_coding protein_coding MGP_AJ_T0068037.1 MGP_AJ_G0028776.1 mouse_genomes_project 4 125893046 125922613 - MGP_AJ_P0068037 C77080 protein_coding protein_coding MGP_AJ_T0068038.1 MGP_AJ_G0028776.1 mouse_genomes_project 4 125898823 125935604 - MGP_AJ_P0068038 C77080 protein_coding protein_coding MGP_AJ_T0099962.1 MGP_AJ_G0037928.1 mouse_genomes_project 4 126581611 126581763 + Gm23845 snRNA snRNA MGP_AJ_T0068969.1 MGP_AJ_G0028980.1 mouse_genomes_project 4 136345296 136372181 + MGP_AJ_P0068969 Aldh4a1 protein_coding protein_coding MGP_AJ_T0068970.1 MGP_AJ_G0028980.1 mouse_genomes_project 4 136345324 136372178 + Aldh4a1 protein_coding processed_transcript MGP_AJ_T0068971.1 MGP_AJ_G0028980.1 mouse_genomes_project 4 136345539 136358022 + Aldh4a1 protein_coding processed_transcript MGP_AJ_T0099029.1 MGP_AJ_G0037006.1 mouse_genomes_project 4 149759778 149760088 + sense_intronic sense_intronic MGP_AJ_T0014747.1 MGP_AJ_G0012842.1 mouse_genomes_project 4 117612190 117613493 + processed_pseudogene processed_pseudogene MGP_AJ_T0011580.1 MGP_AJ_G0009702.1 mouse_genomes_project 4 111341483 111341581 + Gm24045 misc_RNA misc_RNA MGP_AJ_T0065685.1 MGP_AJ_G0028223.1 mouse_genomes_project 4 43674245 43716142 - MGP_AJ_P0065685 Anks6 protein_coding protein_coding MGP_AJ_T0065686.1 MGP_AJ_G0028223.1 mouse_genomes_project 4 43674265 43716142 - MGP_AJ_P0065686 Anks6 protein_coding protein_coding MGP_AJ_T0065687.1 MGP_AJ_G0028223.1 mouse_genomes_project 4 43675594 43684329 - Anks6 protein_coding processed_transcript MGP_AJ_T0065688.1 MGP_AJ_G0028223.1 mouse_genomes_project 4 43697047 43698732 - Anks6 protein_coding processed_transcript MGP_AJ_T0068217.1 MGP_AJ_G0028812.1 mouse_genomes_project 4 127193141 127316365 + MGP_AJ_P0068217 Pum1 protein_coding protein_coding MGP_AJ_T0068218.1 MGP_AJ_G0028812.1 mouse_genomes_project 4 127193179 127316363 + MGP_AJ_P0068218 Pum1 protein_coding protein_coding MGP_AJ_T0068219.1 MGP_AJ_G0028812.1 mouse_genomes_project 4 127193179 127316363 + MGP_AJ_P0068219 Pum1 protein_coding protein_coding MGP_AJ_T0068220.1 MGP_AJ_G0028812.1 mouse_genomes_project 4 127193186 127253676 + Pum1 protein_coding retained_intron MGP_AJ_T0068221.1 MGP_AJ_G0028812.1 mouse_genomes_project 4 127193187 127281799 + MGP_AJ_P0068221 Pum1 protein_coding protein_coding MGP_AJ_T0068222.1 MGP_AJ_G0028812.1 mouse_genomes_project 4 127193206 127315068 + MGP_AJ_P0068222 Pum1 protein_coding protein_coding MGP_AJ_T0068223.1 MGP_AJ_G0028812.1 mouse_genomes_project 4 127193226 127315056 + MGP_AJ_P0068223 Pum1 protein_coding protein_coding MGP_AJ_T0099915.1 MGP_AJ_G0037881.1 mouse_genomes_project 4 42221251 42221358 + Gm22055 snRNA snRNA MGP_AJ_T0099922.1 MGP_AJ_G0037888.1 mouse_genomes_project 4 60345676 60345783 - Gm24448 snRNA snRNA MGP_AJ_T0066499.1 MGP_AJ_G0028438.1 mouse_genomes_project 4 95562776 95568139 - MGP_AJ_P0066499 I0C0044D17Rik protein_coding protein_coding MGP_AJ_T0066500.1 MGP_AJ_G0028438.1 mouse_genomes_project 4 95564114 95564624 - MGP_AJ_P0066500 I0C0044D17Rik protein_coding protein_coding MGP_AJ_T0008006.1 MGP_AJ_G0006529.1 mouse_genomes_project 4 133775203 133776073 - 1700037C06Rik lincRNA lincRNA MGP_AJ_T0066811.1 MGP_AJ_G0028503.1 mouse_genomes_project 4 104248453 104249923 + Glis1 protein_coding processed_transcript MGP_AJ_T0066812.1 MGP_AJ_G0028503.1 mouse_genomes_project 4 104248479 104373919 + MGP_AJ_P0066812 Glis1 protein_coding protein_coding MGP_AJ_T0066813.1 MGP_AJ_G0028503.1 mouse_genomes_project 4 104248581 104446120 + MGP_AJ_P0066813 Glis1 protein_coding protein_coding MGP_AJ_T0066814.1 MGP_AJ_G0028503.1 mouse_genomes_project 4 104252884 104446120 + MGP_AJ_P0066814 Glis1 protein_coding protein_coding MGP_AJ_T0066815.1 MGP_AJ_G0028503.1 mouse_genomes_project 4 104391902 104438519 + Glis1 protein_coding processed_transcript MGP_AJ_T0066816.1 MGP_AJ_G0028503.1 mouse_genomes_project 4 104426056 104443440 + Glis1 protein_coding processed_transcript MGP_AJ_T0068881.1 MGP_AJ_G0028957.1 mouse_genomes_project 4 135156524 135162358 + MGP_AJ_P0068881 Camk2n1 protein_coding protein_coding MGP_AJ_T0007869.1 MGP_AJ_G0006429.1 mouse_genomes_project 4 55302530 55312707 - Gm12580 lincRNA lincRNA MGP_AJ_T0067027.1 MGP_AJ_G0028541.1 mouse_genomes_project 4 108190582 108234913 + MGP_AJ_P0067027 Bend5 protein_coding protein_coding MGP_AJ_T0067028.1 MGP_AJ_G0028541.1 mouse_genomes_project 4 108190623 108208791 + Bend5 protein_coding processed_transcript MGP_AJ_T0067029.1 MGP_AJ_G0028541.1 mouse_genomes_project 4 108190664 108234535 + Bend5 protein_coding processed_transcript MGP_AJ_T0067030.1 MGP_AJ_G0028541.1 mouse_genomes_project 4 108190783 108196119 + Bend5 protein_coding processed_transcript MGP_AJ_T0067031.1 MGP_AJ_G0028541.1 mouse_genomes_project 4 108208741 108234911 + MGP_AJ_P0067031 Bend5 protein_coding protein_coding MGP_AJ_T0067032.1 MGP_AJ_G0028541.1 mouse_genomes_project 4 108208863 108234542 + Bend5 protein_coding processed_transcript MGP_AJ_T0069982.1 MGP_AJ_G0029208.1 mouse_genomes_project 4 153623699 153626481 + MGP_AJ_P0069982 Tnfrsf4 protein_coding protein_coding MGP_AJ_T0069983.1 MGP_AJ_G0029208.1 mouse_genomes_project 4 153623712 153626468 + Tnfrsf4 protein_coding processed_transcript MGP_AJ_T0069984.1 MGP_AJ_G0029208.1 mouse_genomes_project 4 153624105 153625115 + Tnfrsf4 protein_coding processed_transcript MGP_AJ_T0065760.1 MGP_AJ_G0028245.1 mouse_genomes_project 4 46286421 46299795 - MGP_AJ_P0065760 Tmem246 protein_coding protein_coding MGP_AJ_T0065761.1 MGP_AJ_G0028245.1 mouse_genomes_project 4 46288681 46299389 - MGP_AJ_P0065761 Tmem246 protein_coding protein_coding MGP_AJ_T0065762.1 MGP_AJ_G0028245.1 mouse_genomes_project 4 46288967 46295806 - MGP_AJ_P0065762 Tmem246 protein_coding protein_coding MGP_AJ_T0064668.1 MGP_AJ_G0027999.1 mouse_genomes_project 4 5744991 5758089 + Clvs1 protein_coding processed_transcript MGP_AJ_T0064669.1 MGP_AJ_G0027999.1 mouse_genomes_project 4 5745015 5829498 + Clvs1 protein_coding processed_transcript MGP_AJ_T0064670.1 MGP_AJ_G0027999.1 mouse_genomes_project 4 5745015 5928143 + MGP_AJ_P0064670 Clvs1 protein_coding protein_coding MGP_AJ_T0064671.1 MGP_AJ_G0027999.1 mouse_genomes_project 4 5745028 5758087 + Clvs1 protein_coding processed_transcript MGP_AJ_T0064672.1 MGP_AJ_G0027999.1 mouse_genomes_project 4 5745045 5757249 + Clvs1 protein_coding processed_transcript MGP_AJ_T0064673.1 MGP_AJ_G0027999.1 mouse_genomes_project 4 5747154 5928143 + MGP_AJ_P0064673 Clvs1 protein_coding protein_coding MGP_AJ_T0064674.1 MGP_AJ_G0027999.1 mouse_genomes_project 4 5787047 5905918 + Clvs1 protein_coding processed_transcript MGP_AJ_T0064675.1 MGP_AJ_G0027999.1 mouse_genomes_project 4 5811011 5905955 + Clvs1 protein_coding processed_transcript MGP_AJ_T0064809.1 MGP_AJ_G0028030.1 mouse_genomes_project 4 12430417 12457813 + MGP_AJ_P0064809 Calb1 protein_coding protein_coding MGP_AJ_T0064810.1 MGP_AJ_G0028030.1 mouse_genomes_project 4 12430419 12445527 + Calb1 protein_coding retained_intron MGP_AJ_T0064811.1 MGP_AJ_G0028030.1 mouse_genomes_project 4 12435218 12445847 + Calb1 protein_coding retained_intron MGP_AJ_T0014556.1 MGP_AJ_G0012651.1 mouse_genomes_project 4 50513588 50513992 + processed_pseudogene processed_pseudogene MGP_AJ_T0018061.1 MGP_AJ_G0015532.1 mouse_genomes_project 4 86181907 86200710 + Gm12609 processed_transcript processed_transcript MGP_AJ_T0014615.1 MGP_AJ_G0012710.1 mouse_genomes_project 4 73606963 73608000 + processed_pseudogene processed_pseudogene MGP_AJ_T0068041.1 MGP_AJ_G0028778.1 mouse_genomes_project 4 125981617 126009933 - MGP_AJ_P0068041 Rbbp4 protein_coding protein_coding MGP_AJ_T0068042.1 MGP_AJ_G0028778.1 mouse_genomes_project 4 125984028 126009207 - Rbbp4 protein_coding processed_transcript MGP_AJ_T0068043.1 MGP_AJ_G0028778.1 mouse_genomes_project 4 125999186 126009812 - Rbbp4 protein_coding retained_intron MGP_AJ_T0068044.1 MGP_AJ_G0028778.1 mouse_genomes_project 4 126003011 126009646 - MGP_AJ_P0068044 Rbbp4 protein_coding protein_coding MGP_AJ_T0014423.1 MGP_AJ_G0012518.1 mouse_genomes_project 4 12071947 12072402 - processed_pseudogene processed_pseudogene MGP_AJ_T0014408.1 MGP_AJ_G0012503.1 mouse_genomes_project 4 7649192 7649474 + processed_pseudogene processed_pseudogene MGP_AJ_T0004604.1 MGP_AJ_G0003991.1 mouse_genomes_project 4 148331583 148359213 - 1700045H11Rik antisense antisense MGP_AJ_T0067156.1 MGP_AJ_G0028573.1 mouse_genomes_project 4 112280761 112289337 + MGP_AJ_P0067156 6430628N08Rik protein_coding protein_coding MGP_AJ_T0014440.1 MGP_AJ_G0012535.1 mouse_genomes_project 4 15516905 15517843 + processed_pseudogene processed_pseudogene MGP_AJ_T0014473.1 MGP_AJ_G0012568.1 mouse_genomes_project 4 24960489 24960836 - processed_pseudogene processed_pseudogene MGP_AJ_T0018051.1 MGP_AJ_G0015526.1 mouse_genomes_project 4 60753258 60918070 + 8030451A03Rik processed_transcript processed_transcript MGP_AJ_T0018052.1 MGP_AJ_G0015526.1 mouse_genomes_project 4 60753347 60824041 + 8030451A03Rik processed_transcript processed_transcript MGP_AJ_T0018053.1 MGP_AJ_G0015526.1 mouse_genomes_project 4 60753364 60756755 + 8030451A03Rik processed_transcript processed_transcript MGP_AJ_T0018054.1 MGP_AJ_G0015526.1 mouse_genomes_project 4 60916698 60917091 + 8030451A03Rik processed_transcript processed_transcript MGP_AJ_T0007960.1 MGP_AJ_G0006500.1 mouse_genomes_project 4 124135331 124137348 + 4930471C06Rik lincRNA lincRNA MGP_AJ_T0007961.1 MGP_AJ_G0006500.1 mouse_genomes_project 4 124135417 124137348 + 4930471C06Rik lincRNA lincRNA MGP_AJ_T0014403.1 MGP_AJ_G0012498.1 mouse_genomes_project 4 6431698 6432361 + processed_pseudogene processed_pseudogene MGP_AJ_T0067082.1 MGP_AJ_G0028552.1 mouse_genomes_project 4 111249151 111251742 - MGP_AJ_P0067082 Foxd2 protein_coding protein_coding MGP_AJ_T0065433.1 MGP_AJ_G0028169.1 mouse_genomes_project 4 40204029 40208750 + MGP_AJ_P0065433 Creb3 protein_coding protein_coding MGP_AJ_T0065434.1 MGP_AJ_G0028169.1 mouse_genomes_project 4 40204509 40208487 + MGP_AJ_P0065434 Creb3 protein_coding protein_coding MGP_AJ_T0065435.1 MGP_AJ_G0028169.1 mouse_genomes_project 4 40204643 40207009 + MGP_AJ_P0065435 Creb3 protein_coding protein_coding MGP_AJ_T0065436.1 MGP_AJ_G0028169.1 mouse_genomes_project 4 40204963 40208217 + Creb3 protein_coding retained_intron MGP_AJ_T0065437.1 MGP_AJ_G0028169.1 mouse_genomes_project 4 40205126 40207243 + Creb3 protein_coding retained_intron MGP_AJ_T0065438.1 MGP_AJ_G0028169.1 mouse_genomes_project 4 40207704 40208394 + Creb3 protein_coding retained_intron MGP_AJ_T0010596.1 MGP_AJ_G0008718.1 mouse_genomes_project 4 84246702 84247667 + miRNA miRNA MGP_AJ_T0069066.1 MGP_AJ_G0029004.1 mouse_genomes_project 4 138151923 138165542 - MGP_AJ_P0069066 Clcnka protein_coding protein_coding MGP_AJ_T0069067.1 MGP_AJ_G0029004.1 mouse_genomes_project 4 138151923 138166062 - MGP_AJ_P0069067 Clcnka protein_coding protein_coding MGP_AJ_T0069068.1 MGP_AJ_G0029004.1 mouse_genomes_project 4 138158733 138162165 - Clcnka protein_coding retained_intron MGP_AJ_T0069069.1 MGP_AJ_G0029004.1 mouse_genomes_project 4 138162456 138165912 - MGP_AJ_P0069069 Clcnka protein_coding protein_coding MGP_AJ_T0010590.1 MGP_AJ_G0008712.1 mouse_genomes_project 4 53538797 53538867 - Mir32 miRNA miRNA MGP_AJ_T0014741.1 MGP_AJ_G0012836.1 mouse_genomes_project 4 115971348 115971762 - processed_pseudogene processed_pseudogene MGP_AJ_T0101242.1 MGP_AJ_G0039208.1 mouse_genomes_project 4 113564277 113564346 - Gm22980 snoRNA snoRNA MGP_AJ_T0101804.1 MGP_AJ_G0039712.1 mouse_genomes_project 4 56495623 56496166 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0067670.1 MGP_AJ_G0028689.1 mouse_genomes_project 4 119535787 119536875 + MGP_AJ_P0067670 Mycl protein_coding protein_coding MGP_AJ_T0067671.1 MGP_AJ_G0028689.1 mouse_genomes_project 4 119536079 119542656 + MGP_AJ_P0067671 Mycl protein_coding protein_coding MGP_AJ_T0067672.1 MGP_AJ_G0028689.1 mouse_genomes_project 4 119536234 119542656 + MGP_AJ_P0067672 Mycl protein_coding protein_coding MGP_AJ_T0067673.1 MGP_AJ_G0028689.1 mouse_genomes_project 4 119539050 119540638 + Mycl protein_coding processed_transcript MGP_AJ_T0067674.1 MGP_AJ_G0028689.1 mouse_genomes_project 4 119539509 119540688 + Mycl protein_coding processed_transcript MGP_AJ_T0068205.1 MGP_AJ_G0028809.1 mouse_genomes_project 4 127008573 127053662 - MGP_AJ_P0068205 Zcchc17 protein_coding protein_coding MGP_AJ_T0068206.1 MGP_AJ_G0028809.1 mouse_genomes_project 4 127009469 127011930 - Zcchc17 protein_coding processed_transcript MGP_AJ_T0068207.1 MGP_AJ_G0028809.1 mouse_genomes_project 4 127009885 127038574 - Zcchc17 protein_coding processed_transcript MGP_AJ_T0068208.1 MGP_AJ_G0028809.1 mouse_genomes_project 4 127030487 127032216 - Zcchc17 protein_coding processed_transcript MGP_AJ_T0068209.1 MGP_AJ_G0028809.1 mouse_genomes_project 4 127045882 127053635 - Zcchc17 protein_coding retained_intron MGP_AJ_T0007830.1 MGP_AJ_G0006397.1 mouse_genomes_project 4 30564690 30568638 + Gm12753 lincRNA lincRNA MGP_AJ_T0014749.1 MGP_AJ_G0012844.1 mouse_genomes_project 4 117850787 117851028 + processed_pseudogene processed_pseudogene MGP_AJ_T0004472.1 MGP_AJ_G0003895.1 mouse_genomes_project 4 84837802 84839300 + Gm12631 antisense antisense MGP_AJ_T0066293.1 MGP_AJ_G0028375.1 mouse_genomes_project 4 83558332 83637133 + MGP_AJ_P0066293 Dennd4c protein_coding protein_coding MGP_AJ_T0066294.1 MGP_AJ_G0028375.1 mouse_genomes_project 4 83558332 83659185 + MGP_AJ_P0066294 Dennd4c protein_coding protein_coding MGP_AJ_T0066295.1 MGP_AJ_G0028375.1 mouse_genomes_project 4 83577266 83657637 + MGP_AJ_P0066295 Dennd4c protein_coding protein_coding MGP_AJ_T0066296.1 MGP_AJ_G0028375.1 mouse_genomes_project 4 83580888 83584783 + Dennd4c protein_coding processed_transcript MGP_AJ_T0014813.1 MGP_AJ_G0012908.1 mouse_genomes_project 4 140072559 140077194 - processed_pseudogene processed_pseudogene MGP_AJ_T0068726.1 MGP_AJ_G0028921.1 mouse_genomes_project 4 132839693 132878385 + MGP_AJ_P0068726 Asap3 protein_coding protein_coding MGP_AJ_T0007889.1 MGP_AJ_G0006448.1 mouse_genomes_project 4 80826493 80830433 - Gm12414 lincRNA lincRNA MGP_AJ_T0069186.1 MGP_AJ_G0029045.1 mouse_genomes_project 4 140768014 140772562 + MGP_AJ_P0069186 Gm13088 protein_coding protein_coding MGP_AJ_T0014798.1 MGP_AJ_G0012893.1 mouse_genomes_project 4 132615781 132616146 + processed_pseudogene processed_pseudogene MGP_AJ_T0014480.1 MGP_AJ_G0012575.1 mouse_genomes_project 4 25958087 25958595 + processed_pseudogene processed_pseudogene MGP_AJ_T0064986.1 MGP_AJ_G0028076.1 mouse_genomes_project 4 29465498 29498764 + MGP_AJ_P0064986 Gabrr2 protein_coding protein_coding MGP_AJ_T0064987.1 MGP_AJ_G0028076.1 mouse_genomes_project 4 29465611 29498764 + MGP_AJ_P0064987 Gabrr2 protein_coding protein_coding MGP_AJ_T0064988.1 MGP_AJ_G0028076.1 mouse_genomes_project 4 29481716 29488483 + MGP_AJ_P0064988 Gabrr2 protein_coding protein_coding MGP_AJ_T0064989.1 MGP_AJ_G0028076.1 mouse_genomes_project 4 29484425 29488739 + MGP_AJ_P0064989 Gabrr2 protein_coding protein_coding MGP_AJ_T0004458.1 MGP_AJ_G0003881.1 mouse_genomes_project 4 49877954 49882892 + 4930522O17Rik antisense antisense MGP_AJ_T0065628.1 MGP_AJ_G0028209.1 mouse_genomes_project 4 42639430 42707952 + MGP_AJ_P0065628 Tdrd7 protein_coding protein_coding MGP_AJ_T0065629.1 MGP_AJ_G0028209.1 mouse_genomes_project 4 42646348 42707952 + MGP_AJ_P0065629 Tdrd7 protein_coding protein_coding MGP_AJ_T0065630.1 MGP_AJ_G0028209.1 mouse_genomes_project 4 42646949 42661639 + Tdrd7 protein_coding processed_transcript MGP_AJ_T0065631.1 MGP_AJ_G0028209.1 mouse_genomes_project 4 42664136 42679550 + Tdrd7 protein_coding processed_transcript MGP_AJ_T0065632.1 MGP_AJ_G0028209.1 mouse_genomes_project 4 42699482 42707952 + Tdrd7 protein_coding processed_transcript MGP_AJ_T0007838.1 MGP_AJ_G0006405.1 mouse_genomes_project 4 39672067 39673549 + Gm26643 lincRNA lincRNA MGP_AJ_T0068912.1 MGP_AJ_G0028967.1 mouse_genomes_project 4 135679398 135680647 + MGP_AJ_P0068912 Rnf186 protein_coding protein_coding MGP_AJ_T0007981.1 MGP_AJ_G0006515.1 mouse_genomes_project 4 127538264 127543385 - A930031H19Rik lincRNA lincRNA MGP_AJ_T0007982.1 MGP_AJ_G0006515.1 mouse_genomes_project 4 127538264 127548002 - A930031H19Rik lincRNA lincRNA MGP_AJ_T0068203.1 MGP_AJ_G0028807.1 mouse_genomes_project 4 127001352 127001865 - MGP_AJ_P0068203 Gm10570 protein_coding protein_coding MGP_AJ_T0066657.1 MGP_AJ_G0028470.1 mouse_genomes_project 4 100032096 100085669 - MGP_AJ_P0066657 4921539E11Rik protein_coding protein_coding MGP_AJ_T0066658.1 MGP_AJ_G0028470.1 mouse_genomes_project 4 100032096 100085669 - MGP_AJ_P0066658 4921539E11Rik protein_coding protein_coding MGP_AJ_T0066659.1 MGP_AJ_G0028470.1 mouse_genomes_project 4 100036690 100085669 - MGP_AJ_P0066659 4921539E11Rik protein_coding protein_coding MGP_AJ_T0014486.1 MGP_AJ_G0012581.1 mouse_genomes_project 4 28600884 28601828 + processed_pseudogene processed_pseudogene MGP_AJ_T0069050.1 MGP_AJ_G0029000.1 mouse_genomes_project 4 137978495 137985584 + MGP_AJ_P0069050 Rsg1 protein_coding protein_coding MGP_AJ_T0069051.1 MGP_AJ_G0029000.1 mouse_genomes_project 4 137978984 137984110 + Rsg1 protein_coding processed_transcript MGP_AJ_T0069052.1 MGP_AJ_G0029000.1 mouse_genomes_project 4 137984081 137993176 + Rsg1 protein_coding processed_transcript MGP_AJ_T0014427.1 MGP_AJ_G0012522.1 mouse_genomes_project 4 12561610 12562932 - processed_pseudogene processed_pseudogene MGP_AJ_T0018031.1 MGP_AJ_G0015512.1 mouse_genomes_project 4 14968954 15435977 + processed_transcript processed_transcript MGP_AJ_T0065913.1 MGP_AJ_G0028287.1 mouse_genomes_project 4 55427978 55428920 - MGP_AJ_P0065913 Olfr267 protein_coding protein_coding MGP_AJ_T0014606.1 MGP_AJ_G0012701.1 mouse_genomes_project 4 71906603 71907984 + processed_pseudogene processed_pseudogene MGP_AJ_T0007855.1 MGP_AJ_G0006418.1 mouse_genomes_project 4 51280991 51281466 - Gm29067 lincRNA lincRNA MGP_AJ_T0008032.1 MGP_AJ_G0006554.1 mouse_genomes_project 4 147592956 147598360 - Gm13093 lincRNA lincRNA MGP_AJ_T0066355.1 MGP_AJ_G0028401.1 mouse_genomes_project 4 85685930 85686594 - MGP_AJ_P0066355 Ifne protein_coding protein_coding MGP_AJ_T0068776.1 MGP_AJ_G0028934.1 mouse_genomes_project 4 133553989 133556782 - MGP_AJ_P0068776 C1qa protein_coding protein_coding MGP_AJ_T0065204.1 MGP_AJ_G0028130.1 mouse_genomes_project 4 38211680 38215148 + MGP_AJ_P0065204 Galt protein_coding protein_coding MGP_AJ_T0065205.1 MGP_AJ_G0028130.1 mouse_genomes_project 4 38211680 38215148 + MGP_AJ_P0065205 Galt protein_coding protein_coding MGP_AJ_T0065206.1 MGP_AJ_G0028130.1 mouse_genomes_project 4 38211705 38214002 + Galt protein_coding processed_transcript MGP_AJ_T0065207.1 MGP_AJ_G0028130.1 mouse_genomes_project 4 38211705 38212900 + Galt protein_coding processed_transcript MGP_AJ_T0065208.1 MGP_AJ_G0028130.1 mouse_genomes_project 4 38212210 38213933 + Galt protein_coding processed_transcript MGP_AJ_T0065209.1 MGP_AJ_G0028130.1 mouse_genomes_project 4 38212292 38213725 + Galt protein_coding processed_transcript MGP_AJ_T0065210.1 MGP_AJ_G0028130.1 mouse_genomes_project 4 38212413 38213933 + Galt protein_coding processed_transcript MGP_AJ_T0065211.1 MGP_AJ_G0028130.1 mouse_genomes_project 4 38212662 38215148 + Galt protein_coding processed_transcript MGP_AJ_T0065212.1 MGP_AJ_G0028130.1 mouse_genomes_project 4 38212706 38214691 + Galt protein_coding processed_transcript MGP_AJ_T0065213.1 MGP_AJ_G0028130.1 mouse_genomes_project 4 38212714 38214231 + Galt protein_coding processed_transcript MGP_AJ_T0010587.1 MGP_AJ_G0008709.1 mouse_genomes_project 4 41527965 41528090 + Gm22639 miRNA miRNA MGP_AJ_T0010575.1 MGP_AJ_G0008697.1 mouse_genomes_project 4 20124879 20124969 - Gm25978 miRNA miRNA MGP_AJ_T0014472.1 MGP_AJ_G0012567.1 mouse_genomes_project 4 24836193 24837200 + processed_pseudogene processed_pseudogene MGP_AJ_T0067229.1 MGP_AJ_G0028587.1 mouse_genomes_project 4 112949691 112954048 - MGP_AJ_P0067229 Tmem69 protein_coding protein_coding MGP_AJ_T0067230.1 MGP_AJ_G0028587.1 mouse_genomes_project 4 112949963 112951227 - Tmem69 protein_coding processed_transcript MGP_AJ_T0067231.1 MGP_AJ_G0028587.1 mouse_genomes_project 4 112951066 112954047 - MGP_AJ_P0067231 Tmem69 protein_coding protein_coding MGP_AJ_T0067678.1 MGP_AJ_G0028691.1 mouse_genomes_project 4 119657283 119685041 + MGP_AJ_P0067678 Bmp8b protein_coding protein_coding MGP_AJ_T0067680.1 MGP_AJ_G0028691.1 mouse_genomes_project 4 119673890 119691645 + Bmp8b protein_coding processed_transcript MGP_AJ_T0004570.1 MGP_AJ_G0003967.1 mouse_genomes_project 4 138028068 138032228 - Gm13055 antisense antisense MGP_AJ_T0007809.1 MGP_AJ_G0006377.1 mouse_genomes_project 4 7856972 7877831 + Gm26663 lincRNA lincRNA MGP_AJ_T0099970.1 MGP_AJ_G0037936.1 mouse_genomes_project 4 132756233 132756336 + Gm26001 snRNA snRNA MGP_AJ_T0065009.1 MGP_AJ_G0028084.1 mouse_genomes_project 4 30952146 30967771 + MGP_AJ_P0065009 Akirin2 protein_coding protein_coding MGP_AJ_T0065010.1 MGP_AJ_G0028084.1 mouse_genomes_project 4 30952160 30963632 + Akirin2 protein_coding processed_transcript MGP_AJ_T0068665.1 MGP_AJ_G0028906.1 mouse_genomes_project 4 132300958 132322709 + MGP_AJ_P0068665 Ifnlr1 protein_coding protein_coding MGP_AJ_T0011577.1 MGP_AJ_G0009699.1 mouse_genomes_project 4 102774990 102775301 - Gm24363 misc_RNA misc_RNA MGP_AJ_T0064754.1 MGP_AJ_G0028013.1 mouse_genomes_project 4 8249334 8259768 + MGP_AJ_P0064754 Gem protein_coding protein_coding MGP_AJ_T0064755.1 MGP_AJ_G0028013.1 mouse_genomes_project 4 8250685 8259768 + MGP_AJ_P0064755 Gem protein_coding protein_coding MGP_AJ_T0001424.1 MGP_AJ_G0001346.1 mouse_genomes_project 4 128653680 128657682 - TEC TEC MGP_AJ_T0010567.1 MGP_AJ_G0008689.1 mouse_genomes_project 4 6143730 6143802 + Gm25677 miRNA miRNA MGP_AJ_T0069181.1 MGP_AJ_G0029042.1 mouse_genomes_project 4 140662557 140674231 + MGP_AJ_P0069181 protein_coding protein_coding MGP_AJ_T0004595.1 MGP_AJ_G0003984.1 mouse_genomes_project 4 146785292 146785737 + Ube4bos2 antisense antisense MGP_AJ_T0068299.1 MGP_AJ_G0028827.1 mouse_genomes_project 4 128867579 128886021 - MGP_AJ_P0068299 Trnau1ap protein_coding protein_coding MGP_AJ_T0068300.1 MGP_AJ_G0028827.1 mouse_genomes_project 4 128867579 128886070 - MGP_AJ_P0068300 Trnau1ap protein_coding protein_coding MGP_AJ_T0068301.1 MGP_AJ_G0028827.1 mouse_genomes_project 4 128867581 128886048 - Trnau1ap protein_coding retained_intron MGP_AJ_T0068302.1 MGP_AJ_G0028827.1 mouse_genomes_project 4 128867665 128886026 - Trnau1ap protein_coding processed_transcript MGP_AJ_T0068303.1 MGP_AJ_G0028827.1 mouse_genomes_project 4 128867681 128885921 - MGP_AJ_P0068303 Trnau1ap protein_coding nonsense_mediated_decay MGP_AJ_T0068304.1 MGP_AJ_G0028827.1 mouse_genomes_project 4 128870023 128885946 - MGP_AJ_P0068304 Trnau1ap protein_coding protein_coding MGP_AJ_T0068305.1 MGP_AJ_G0028827.1 mouse_genomes_project 4 128870129 128886036 - MGP_AJ_P0068305 Trnau1ap protein_coding nonsense_mediated_decay MGP_AJ_T0068306.1 MGP_AJ_G0028827.1 mouse_genomes_project 4 128870166 128886014 - Trnau1ap protein_coding processed_transcript MGP_AJ_T0068307.1 MGP_AJ_G0028827.1 mouse_genomes_project 4 128870169 128886070 - MGP_AJ_P0068307 Trnau1ap protein_coding nonsense_mediated_decay MGP_AJ_T0068308.1 MGP_AJ_G0028827.1 mouse_genomes_project 4 128877732 128881808 - Trnau1ap protein_coding retained_intron MGP_AJ_T0068309.1 MGP_AJ_G0028827.1 mouse_genomes_project 4 128878210 128886070 - MGP_AJ_P0068309 Trnau1ap protein_coding protein_coding MGP_AJ_T0068310.1 MGP_AJ_G0028827.1 mouse_genomes_project 4 128884640 128886047 - Trnau1ap protein_coding retained_intron MGP_AJ_T0099956.1 MGP_AJ_G0037922.1 mouse_genomes_project 4 120921998 120922102 - Gm22983 snRNA snRNA MGP_AJ_T0066090.1 MGP_AJ_G0028337.1 mouse_genomes_project 4 61889863 62126158 + MGP_AJ_P0066090 Pappa protein_coding protein_coding MGP_AJ_T0069881.1 MGP_AJ_G0029188.1 mouse_genomes_project 4 153322683 153352209 + MGP_AJ_P0069881 Ssu72 protein_coding protein_coding MGP_AJ_T0069882.1 MGP_AJ_G0029188.1 mouse_genomes_project 4 153323007 153334932 + Ssu72 protein_coding retained_intron MGP_AJ_T0069883.1 MGP_AJ_G0029188.1 mouse_genomes_project 4 153323018 153350526 + MGP_AJ_P0069883 Ssu72 protein_coding protein_coding MGP_AJ_T0102611.1 MGP_AJ_G0040353.1 mouse_genomes_project 4 117944319 117946964 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0065836.1 MGP_AJ_G0028269.1 mouse_genomes_project 4 53379813 53381121 + MGP_AJ_P0065836 Gm26657 protein_coding protein_coding MGP_AJ_T0066138.1 MGP_AJ_G0028351.1 mouse_genomes_project 4 72037913 72038865 - MGP_AJ_P0066138 Tmem261 protein_coding protein_coding MGP_AJ_T0018046.1 MGP_AJ_G0015522.1 mouse_genomes_project 4 43204399 43208294 + Gm16731 processed_transcript processed_transcript MGP_AJ_T0014815.1 MGP_AJ_G0012910.1 mouse_genomes_project 4 140296771 140298650 - processed_pseudogene processed_pseudogene MGP_AJ_T0101222.1 MGP_AJ_G0039188.1 mouse_genomes_project 4 63319036 63319169 + Gm25480 snoRNA snoRNA MGP_AJ_T0004425.1 MGP_AJ_G0003855.1 mouse_genomes_project 4 8581166 8595817 + Gm11842 antisense antisense MGP_AJ_T0010630.1 MGP_AJ_G0008752.1 mouse_genomes_project 4 131171805 131171934 - Mir6403 miRNA miRNA MGP_AJ_T0010604.1 MGP_AJ_G0008726.1 mouse_genomes_project 4 98095497 98095580 - Mir101a miRNA miRNA MGP_AJ_T0014396.1 MGP_AJ_G0012491.1 mouse_genomes_project 4 3069291 3070037 + processed_pseudogene processed_pseudogene MGP_AJ_T0068152.1 MGP_AJ_G0028799.1 mouse_genomes_project 4 126616289 126644993 + MGP_AJ_P0068152 Spocd1 protein_coding unknown_likely_coding MGP_AJ_T0068153.1 MGP_AJ_G0028799.1 mouse_genomes_project 4 126635612 126641581 + MGP_AJ_P0068153 Spocd1 protein_coding protein_coding MGP_AJ_T0068154.1 MGP_AJ_G0028799.1 mouse_genomes_project 4 126635786 126645115 + MGP_AJ_P0068154 Spocd1 protein_coding protein_coding MGP_AJ_T0004610.1 MGP_AJ_G0003997.1 mouse_genomes_project 4 152212057 152215063 + Gm13134 antisense antisense MGP_AJ_T0004611.1 MGP_AJ_G0003997.1 mouse_genomes_project 4 152212175 152213565 + Gm13134 antisense antisense MGP_AJ_T0004533.1 MGP_AJ_G0003936.1 mouse_genomes_project 4 121113954 121244118 - Gm27247 antisense antisense MGP_AJ_T0066393.1 MGP_AJ_G0028415.1 mouse_genomes_project 4 91379622 91393311 - MGP_AJ_P0066393 Lrrc19 protein_coding protein_coding MGP_AJ_T0066394.1 MGP_AJ_G0028415.1 mouse_genomes_project 4 91379622 91393339 - MGP_AJ_P0066394 Lrrc19 protein_coding protein_coding MGP_AJ_T0067927.1 MGP_AJ_G0028751.1 mouse_genomes_project 4 123729342 123778136 + MGP_AJ_P0067927 Zmym6 protein_coding protein_coding MGP_AJ_T0067928.1 MGP_AJ_G0028751.1 mouse_genomes_project 4 123729356 123778138 + MGP_AJ_P0067928 Zmym6 protein_coding protein_coding MGP_AJ_T0067929.1 MGP_AJ_G0028751.1 mouse_genomes_project 4 123729401 123761041 + Zmym6 protein_coding processed_transcript MGP_AJ_T0067930.1 MGP_AJ_G0028751.1 mouse_genomes_project 4 123730250 123740135 + Zmym6 protein_coding processed_transcript MGP_AJ_T0067931.1 MGP_AJ_G0028751.1 mouse_genomes_project 4 123738562 123740278 + Zmym6 protein_coding processed_transcript MGP_AJ_T0067932.1 MGP_AJ_G0028751.1 mouse_genomes_project 4 123757387 123760919 + Zmym6 protein_coding processed_transcript MGP_AJ_T0068787.1 MGP_AJ_G0028941.1 mouse_genomes_project 4 134130821 134132994 + MGP_AJ_P0068787 1700013G24Rik protein_coding protein_coding MGP_AJ_T0068295.1 MGP_AJ_G0028825.1 mouse_genomes_project 4 128828511 128850019 + MGP_AJ_P0068295 Taf12 protein_coding protein_coding MGP_AJ_T0068296.1 MGP_AJ_G0028825.1 mouse_genomes_project 4 128828549 128830925 + Taf12 protein_coding processed_transcript MGP_AJ_T0068297.1 MGP_AJ_G0028825.1 mouse_genomes_project 4 128828552 128846923 + MGP_AJ_P0068297 Taf12 protein_coding protein_coding MGP_AJ_T0069070.1 MGP_AJ_G0029005.1 mouse_genomes_project 4 138172465 138184948 - MGP_AJ_P0069070 Clcnkb protein_coding protein_coding MGP_AJ_T0069071.1 MGP_AJ_G0029005.1 mouse_genomes_project 4 138172465 138184948 - MGP_AJ_P0069071 Clcnkb protein_coding protein_coding MGP_AJ_T0069072.1 MGP_AJ_G0029005.1 mouse_genomes_project 4 138172465 138173470 - MGP_AJ_P0069072 Clcnkb protein_coding protein_coding MGP_AJ_T0069073.1 MGP_AJ_G0029005.1 mouse_genomes_project 4 138183229 138184895 - Clcnkb protein_coding processed_transcript MGP_AJ_T0007874.1 MGP_AJ_G0006434.1 mouse_genomes_project 4 60410820 60415840 + Gm11482 lincRNA lincRNA MGP_AJ_T0065978.1 MGP_AJ_G0028308.1 mouse_genomes_project 4 59045258 59057104 + MGP_AJ_P0065978 Slc31a2 protein_coding protein_coding MGP_AJ_T0018045.1 MGP_AJ_G0015521.1 mouse_genomes_project 4 42437874 42439721 - Gm12409 processed_transcript processed_transcript MGP_AJ_T0101246.1 MGP_AJ_G0039212.1 mouse_genomes_project 4 114590402 114590506 + Gm23382 snoRNA snoRNA MGP_AJ_T0066213.1 MGP_AJ_G0028364.1 mouse_genomes_project 4 80126469 80164984 + MGP_AJ_P0066213 Snapc3 protein_coding nonsense_mediated_decay MGP_AJ_T0066214.1 MGP_AJ_G0028364.1 mouse_genomes_project 4 80126469 80156494 + MGP_AJ_P0066214 Snapc3 protein_coding protein_coding MGP_AJ_T0066215.1 MGP_AJ_G0028364.1 mouse_genomes_project 4 80126476 80151661 + MGP_AJ_P0066215 Snapc3 protein_coding protein_coding MGP_AJ_T0066216.1 MGP_AJ_G0028364.1 mouse_genomes_project 4 80126489 80157187 + MGP_AJ_P0066216 Snapc3 protein_coding nonsense_mediated_decay MGP_AJ_T0066217.1 MGP_AJ_G0028364.1 mouse_genomes_project 4 80126489 80170357 + MGP_AJ_P0066217 Snapc3 protein_coding nonsense_mediated_decay MGP_AJ_T0066218.1 MGP_AJ_G0028364.1 mouse_genomes_project 4 80126494 80172020 + MGP_AJ_P0066218 Snapc3 protein_coding nonsense_mediated_decay MGP_AJ_T0066219.1 MGP_AJ_G0028364.1 mouse_genomes_project 4 80156959 80170304 + Snapc3 protein_coding processed_transcript MGP_AJ_T0066220.1 MGP_AJ_G0028364.1 mouse_genomes_project 4 80157107 80169265 + Snapc3 protein_coding processed_transcript MGP_AJ_T0066227.1 MGP_AJ_G0028364.1 mouse_genomes_project 4 80167113 80170349 + Snapc3 protein_coding retained_intron MGP_AJ_T0007984.1 MGP_AJ_G0006517.1 mouse_genomes_project 4 128188895 128215402 - Gm12962 lincRNA lincRNA MGP_AJ_T0007985.1 MGP_AJ_G0006517.1 mouse_genomes_project 4 128189223 128220122 - Gm12962 lincRNA lincRNA MGP_AJ_T0014451.1 MGP_AJ_G0012546.1 mouse_genomes_project 4 19186660 19187362 + processed_pseudogene processed_pseudogene MGP_AJ_T0067856.1 MGP_AJ_G0028737.1 mouse_genomes_project 4 122953070 122958395 - Adprhl2 protein_coding processed_transcript MGP_AJ_T0067857.1 MGP_AJ_G0028737.1 mouse_genomes_project 4 122953070 122958729 - MGP_AJ_P0067857 Adprhl2 protein_coding protein_coding MGP_AJ_T0067858.1 MGP_AJ_G0028737.1 mouse_genomes_project 4 122953075 122958493 - Adprhl2 protein_coding processed_transcript MGP_AJ_T0067859.1 MGP_AJ_G0028737.1 mouse_genomes_project 4 122955174 122958387 - Adprhl2 protein_coding processed_transcript MGP_AJ_T0067518.1 MGP_AJ_G0028651.1 mouse_genomes_project 4 115656994 115686205 - AU022252 protein_coding processed_transcript MGP_AJ_T0067520.1 MGP_AJ_G0028651.1 mouse_genomes_project 4 115673661 115686209 - MGP_AJ_P0067520 AU022252 protein_coding protein_coding MGP_AJ_T0067521.1 MGP_AJ_G0028651.1 mouse_genomes_project 4 115679919 115686175 - AU022252 protein_coding processed_transcript MGP_AJ_T0067522.1 MGP_AJ_G0028651.1 mouse_genomes_project 4 115680009 115686182 - AU022252 protein_coding processed_transcript MGP_AJ_T0067241.1 MGP_AJ_G0028590.1 mouse_genomes_project 4 112999926 113026670 - MGP_AJ_P0067241 Nasp protein_coding unknown_likely_coding MGP_AJ_T0067242.1 MGP_AJ_G0028590.1 mouse_genomes_project 4 112999933 113027418 - MGP_AJ_P0067242 Nasp protein_coding protein_coding MGP_AJ_T0067243.1 MGP_AJ_G0028590.1 mouse_genomes_project 4 113000490 113027862 - MGP_AJ_P0067243 Nasp protein_coding protein_coding MGP_AJ_T0067244.1 MGP_AJ_G0028590.1 mouse_genomes_project 4 113000490 113027399 - MGP_AJ_P0067244 Nasp protein_coding protein_coding MGP_AJ_T0067245.1 MGP_AJ_G0028590.1 mouse_genomes_project 4 113001607 113005129 - Nasp protein_coding processed_transcript MGP_AJ_T0067246.1 MGP_AJ_G0028590.1 mouse_genomes_project 4 113001673 113003806 - Nasp protein_coding processed_transcript MGP_AJ_T0067247.1 MGP_AJ_G0028590.1 mouse_genomes_project 4 113010351 113027414 - Nasp protein_coding processed_transcript MGP_AJ_T0067248.1 MGP_AJ_G0028590.1 mouse_genomes_project 4 113015972 113023204 - Nasp protein_coding processed_transcript MGP_AJ_T0067249.1 MGP_AJ_G0028590.1 mouse_genomes_project 4 113017575 113027369 - Nasp protein_coding processed_transcript MGP_AJ_T0007946.1 MGP_AJ_G0006494.1 mouse_genomes_project 4 120889489 120898111 - 1700021L23Rik lincRNA lincRNA MGP_AJ_T0065932.1 MGP_AJ_G0028293.1 mouse_genomes_project 4 55683866 55690497 + MGP_AJ_P0065932 Gng10 protein_coding protein_coding MGP_AJ_T0065933.1 MGP_AJ_G0028293.1 mouse_genomes_project 4 55684550 55690497 + Gng10 protein_coding processed_transcript MGP_AJ_T0014676.1 MGP_AJ_G0012771.1 mouse_genomes_project 4 97113321 97114072 - processed_pseudogene processed_pseudogene MGP_AJ_T0099973.1 MGP_AJ_G0037939.1 mouse_genomes_project 4 135537682 135537783 - Gm25280 snRNA snRNA MGP_AJ_T0065412.1 MGP_AJ_G0028166.1 mouse_genomes_project 4 40148879 40154991 + MGP_AJ_P0065412 Car9 protein_coding protein_coding MGP_AJ_T0065413.1 MGP_AJ_G0028166.1 mouse_genomes_project 4 40148898 40155610 + Car9 protein_coding processed_transcript MGP_AJ_T0065414.1 MGP_AJ_G0028166.1 mouse_genomes_project 4 40149186 40154939 + MGP_AJ_P0065414 Car9 protein_coding protein_coding MGP_AJ_T0065415.1 MGP_AJ_G0028166.1 mouse_genomes_project 4 40149761 40150859 + Car9 protein_coding processed_transcript MGP_AJ_T0065416.1 MGP_AJ_G0028166.1 mouse_genomes_project 4 40150427 40150920 + Car9 protein_coding processed_transcript MGP_AJ_T0065417.1 MGP_AJ_G0028166.1 mouse_genomes_project 4 40150821 40154336 + Car9 protein_coding processed_transcript MGP_AJ_T0065418.1 MGP_AJ_G0028166.1 mouse_genomes_project 4 40154012 40154823 + Car9 protein_coding processed_transcript MGP_AJ_T0064998.1 MGP_AJ_G0028081.1 mouse_genomes_project 4 29723931 29924433 + MGP_AJ_P0064998 Rngtt protein_coding protein_coding MGP_AJ_T0064999.1 MGP_AJ_G0028081.1 mouse_genomes_project 4 29723948 29922733 + MGP_AJ_P0064999 Rngtt protein_coding protein_coding MGP_AJ_T0065000.1 MGP_AJ_G0028081.1 mouse_genomes_project 4 29736874 29740677 + Rngtt protein_coding processed_transcript MGP_AJ_T0065001.1 MGP_AJ_G0028081.1 mouse_genomes_project 4 29739536 29753788 + Rngtt protein_coding processed_transcript MGP_AJ_T0065002.1 MGP_AJ_G0028081.1 mouse_genomes_project 4 29745644 29772953 + Rngtt protein_coding processed_transcript MGP_AJ_T0065905.1 MGP_AJ_G0028286.1 mouse_genomes_project 4 55080793 55201795 - MGP_AJ_P0065905 Lpar1 protein_coding protein_coding MGP_AJ_T0065906.1 MGP_AJ_G0028286.1 mouse_genomes_project 4 55080793 55147412 - MGP_AJ_P0065906 Lpar1 protein_coding protein_coding MGP_AJ_T0065907.1 MGP_AJ_G0028286.1 mouse_genomes_project 4 55080794 55201991 - MGP_AJ_P0065907 Lpar1 protein_coding protein_coding MGP_AJ_T0065908.1 MGP_AJ_G0028286.1 mouse_genomes_project 4 55080794 55201749 - MGP_AJ_P0065908 Lpar1 protein_coding protein_coding MGP_AJ_T0065909.1 MGP_AJ_G0028286.1 mouse_genomes_project 4 55080794 55202066 - MGP_AJ_P0065909 Lpar1 protein_coding protein_coding MGP_AJ_T0065910.1 MGP_AJ_G0028286.1 mouse_genomes_project 4 55133429 55196828 - MGP_AJ_P0065910 Lpar1 protein_coding protein_coding MGP_AJ_T0065911.1 MGP_AJ_G0028286.1 mouse_genomes_project 4 55133484 55202336 - MGP_AJ_P0065911 Lpar1 protein_coding protein_coding MGP_AJ_T0065912.1 MGP_AJ_G0028286.1 mouse_genomes_project 4 55133518 55201622 - MGP_AJ_P0065912 Lpar1 protein_coding protein_coding MGP_AJ_T0014739.1 MGP_AJ_G0012834.1 mouse_genomes_project 4 115789923 115791545 - processed_pseudogene processed_pseudogene MGP_AJ_T0069283.1 MGP_AJ_G0029084.1 mouse_genomes_project 4 145564781 145571197 - MGP_AJ_P0069283 Fbxo6 protein_coding protein_coding MGP_AJ_T0069284.1 MGP_AJ_G0029084.1 mouse_genomes_project 4 145564781 145570972 - MGP_AJ_P0069284 Fbxo6 protein_coding protein_coding MGP_AJ_T0069285.1 MGP_AJ_G0029084.1 mouse_genomes_project 4 145564852 145570977 - MGP_AJ_P0069285 Fbxo6 protein_coding protein_coding MGP_AJ_T0069286.1 MGP_AJ_G0029084.1 mouse_genomes_project 4 145564853 145571121 - MGP_AJ_P0069286 Fbxo6 protein_coding protein_coding MGP_AJ_T0069287.1 MGP_AJ_G0029084.1 mouse_genomes_project 4 145565074 145571202 - MGP_AJ_P0069287 Fbxo6 protein_coding protein_coding MGP_AJ_T0069288.1 MGP_AJ_G0029084.1 mouse_genomes_project 4 145565157 145568783 - MGP_AJ_P0069288 Fbxo6 protein_coding protein_coding MGP_AJ_T0069289.1 MGP_AJ_G0029084.1 mouse_genomes_project 4 145565183 145570989 - MGP_AJ_P0069289 Fbxo6 protein_coding protein_coding MGP_AJ_T0069290.1 MGP_AJ_G0029084.1 mouse_genomes_project 4 145568507 145570710 - MGP_AJ_P0069290 Fbxo6 protein_coding protein_coding MGP_AJ_T0102613.1 MGP_AJ_G0040355.1 mouse_genomes_project 4 119121631 119144434 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0068773.1 MGP_AJ_G0028932.1 mouse_genomes_project 4 133538318 133544476 - MGP_AJ_P0068773 C1qb protein_coding protein_coding MGP_AJ_T0004512.1 MGP_AJ_G0003919.1 mouse_genomes_project 4 112949798 112950739 + Gm12953 antisense antisense MGP_AJ_T0067132.1 MGP_AJ_G0028569.1 mouse_genomes_project 4 112175376 112189098 + MGP_AJ_P0067132 Atpaf1 protein_coding protein_coding MGP_AJ_T0067133.1 MGP_AJ_G0028569.1 mouse_genomes_project 4 112175378 112201923 + MGP_AJ_P0067133 Atpaf1 protein_coding protein_coding MGP_AJ_T0067134.1 MGP_AJ_G0028569.1 mouse_genomes_project 4 112175615 112200689 + MGP_AJ_P0067134 Atpaf1 protein_coding protein_coding MGP_AJ_T0067135.1 MGP_AJ_G0028569.1 mouse_genomes_project 4 112175776 112205192 + MGP_AJ_P0067135 Atpaf1 protein_coding nonsense_mediated_decay MGP_AJ_T0067136.1 MGP_AJ_G0028569.1 mouse_genomes_project 4 112191475 112209002 + MGP_AJ_P0067136 Atpaf1 protein_coding nonsense_mediated_decay MGP_AJ_T0004461.1 MGP_AJ_G0003884.1 mouse_genomes_project 4 56552185 56557122 - Gm12542 antisense antisense MGP_AJ_T0014722.1 MGP_AJ_G0012817.1 mouse_genomes_project 4 112106684 112107736 + processed_pseudogene processed_pseudogene MGP_AJ_T0066769.1 MGP_AJ_G0028496.1 mouse_genomes_project 4 103987148 104009718 + MGP_AJ_P0066769 Tmem59 protein_coding protein_coding MGP_AJ_T0066770.1 MGP_AJ_G0028496.1 mouse_genomes_project 4 103987276 103999421 + MGP_AJ_P0066770 Tmem59 protein_coding protein_coding MGP_AJ_T0066771.1 MGP_AJ_G0028496.1 mouse_genomes_project 4 103987276 104009420 + MGP_AJ_P0066771 Tmem59 protein_coding protein_coding MGP_AJ_T0066772.1 MGP_AJ_G0028496.1 mouse_genomes_project 4 103987416 103999624 + Tmem59 protein_coding retained_intron MGP_AJ_T0066773.1 MGP_AJ_G0028496.1 mouse_genomes_project 4 103987475 104009228 + MGP_AJ_P0066773 Tmem59 protein_coding nonsense_mediated_decay MGP_AJ_T0066774.1 MGP_AJ_G0028496.1 mouse_genomes_project 4 103987767 104009716 + Tmem59 protein_coding processed_transcript MGP_AJ_T0066458.1 MGP_AJ_G0028432.1 mouse_genomes_project 4 94276074 94294654 - E130114P18Rik protein_coding processed_transcript MGP_AJ_T0066459.1 MGP_AJ_G0028432.1 mouse_genomes_project 4 94276074 94294630 - E130114P18Rik protein_coding processed_transcript MGP_AJ_T0066460.1 MGP_AJ_G0028432.1 mouse_genomes_project 4 94276074 94294670 - E130114P18Rik protein_coding processed_transcript MGP_AJ_T0066461.1 MGP_AJ_G0028432.1 mouse_genomes_project 4 94276074 94294641 - MGP_AJ_P0066461 E130114P18Rik protein_coding protein_coding MGP_AJ_T0066462.1 MGP_AJ_G0028432.1 mouse_genomes_project 4 94276074 94294663 - MGP_AJ_P0066462 E130114P18Rik protein_coding protein_coding MGP_AJ_T0066463.1 MGP_AJ_G0028432.1 mouse_genomes_project 4 94276074 94490038 - MGP_AJ_P0066463 E130114P18Rik protein_coding protein_coding MGP_AJ_T0066464.1 MGP_AJ_G0028432.1 mouse_genomes_project 4 94277131 94401495 - MGP_AJ_P0066464 E130114P18Rik protein_coding protein_coding MGP_AJ_T0066465.1 MGP_AJ_G0028432.1 mouse_genomes_project 4 94284501 94294646 - E130114P18Rik protein_coding processed_transcript MGP_AJ_T0066466.1 MGP_AJ_G0028432.1 mouse_genomes_project 4 94390027 94490068 - E130114P18Rik protein_coding processed_transcript MGP_AJ_T0068792.1 MGP_AJ_G0028943.1 mouse_genomes_project 4 134254960 134257452 - MGP_AJ_P0068792 Ldlrad2 protein_coding protein_coding MGP_AJ_T0068435.1 MGP_AJ_G0028856.1 mouse_genomes_project 4 130109656 130123108 - MGP_AJ_P0068435 Nudc protein_coding protein_coding MGP_AJ_T0068436.1 MGP_AJ_G0028856.1 mouse_genomes_project 4 130110253 130110549 - Nudc protein_coding processed_transcript MGP_AJ_T0068437.1 MGP_AJ_G0028856.1 mouse_genomes_project 4 130111351 130113016 - Nudc protein_coding processed_transcript MGP_AJ_T0067212.1 MGP_AJ_G0028585.1 mouse_genomes_project 4 112706199 112865902 - MGP_AJ_P0067212 Mast2 protein_coding protein_coding MGP_AJ_T0067213.1 MGP_AJ_G0028585.1 mouse_genomes_project 4 112706200 112866334 - MGP_AJ_P0067213 Mast2 protein_coding protein_coding MGP_AJ_T0067214.1 MGP_AJ_G0028585.1 mouse_genomes_project 4 112706200 112866334 - MGP_AJ_P0067214 Mast2 protein_coding protein_coding MGP_AJ_T0067215.1 MGP_AJ_G0028585.1 mouse_genomes_project 4 112706252 112866066 - MGP_AJ_P0067215 Mast2 protein_coding protein_coding MGP_AJ_T0067216.1 MGP_AJ_G0028585.1 mouse_genomes_project 4 112707445 112708643 - Mast2 protein_coding processed_transcript MGP_AJ_T0067217.1 MGP_AJ_G0028585.1 mouse_genomes_project 4 112709017 112710239 - Mast2 protein_coding processed_transcript MGP_AJ_T0067218.1 MGP_AJ_G0028585.1 mouse_genomes_project 4 112709049 112710086 - Mast2 protein_coding processed_transcript MGP_AJ_T0067219.1 MGP_AJ_G0028585.1 mouse_genomes_project 4 112711728 112715514 - Mast2 protein_coding processed_transcript MGP_AJ_T0067220.1 MGP_AJ_G0028585.1 mouse_genomes_project 4 112712290 112717198 - Mast2 protein_coding processed_transcript MGP_AJ_T0067221.1 MGP_AJ_G0028585.1 mouse_genomes_project 4 112717157 112727252 - Mast2 protein_coding processed_transcript MGP_AJ_T0067222.1 MGP_AJ_G0028585.1 mouse_genomes_project 4 112719286 112730101 - Mast2 protein_coding processed_transcript MGP_AJ_T0067223.1 MGP_AJ_G0028585.1 mouse_genomes_project 4 112721870 112807749 - MGP_AJ_P0067223 Mast2 protein_coding protein_coding MGP_AJ_T0067224.1 MGP_AJ_G0028585.1 mouse_genomes_project 4 112727072 112807765 - MGP_AJ_P0067224 Mast2 protein_coding protein_coding MGP_AJ_T0067225.1 MGP_AJ_G0028585.1 mouse_genomes_project 4 112732351 112808570 - Mast2 protein_coding processed_transcript MGP_AJ_T0067226.1 MGP_AJ_G0028585.1 mouse_genomes_project 4 112732640 112837747 - Mast2 protein_coding processed_transcript MGP_AJ_T0007983.1 MGP_AJ_G0006516.1 mouse_genomes_project 4 128027248 128045604 + Gm831 lincRNA lincRNA MGP_AJ_T0068229.1 MGP_AJ_G0028814.1 mouse_genomes_project 4 127447279 127471550 + MGP_AJ_P0068229 Laptm5 protein_coding protein_coding MGP_AJ_T0068230.1 MGP_AJ_G0028814.1 mouse_genomes_project 4 127447461 127462745 + MGP_AJ_P0068230 Laptm5 protein_coding protein_coding MGP_AJ_T0068231.1 MGP_AJ_G0028814.1 mouse_genomes_project 4 127447467 127459122 + Laptm5 protein_coding processed_transcript MGP_AJ_T0068232.1 MGP_AJ_G0028814.1 mouse_genomes_project 4 127447473 127462748 + Laptm5 protein_coding processed_transcript MGP_AJ_T0068233.1 MGP_AJ_G0028814.1 mouse_genomes_project 4 127447474 127460421 + Laptm5 protein_coding processed_transcript MGP_AJ_T0068234.1 MGP_AJ_G0028814.1 mouse_genomes_project 4 127447511 127468927 + MGP_AJ_P0068234 Laptm5 protein_coding protein_coding MGP_AJ_T0068235.1 MGP_AJ_G0028814.1 mouse_genomes_project 4 127449621 127462766 + Laptm5 protein_coding processed_transcript MGP_AJ_T0068236.1 MGP_AJ_G0028814.1 mouse_genomes_project 4 127449819 127460908 + Laptm5 protein_coding processed_transcript MGP_AJ_T0068237.1 MGP_AJ_G0028814.1 mouse_genomes_project 4 127450102 127470339 + MGP_AJ_P0068237 Laptm5 protein_coding protein_coding MGP_AJ_T0068238.1 MGP_AJ_G0028814.1 mouse_genomes_project 4 127466107 127469211 + Laptm5 protein_coding processed_transcript MGP_AJ_T0014525.1 MGP_AJ_G0012620.1 mouse_genomes_project 4 41042169 41042585 + processed_pseudogene processed_pseudogene MGP_AJ_T0014545.1 MGP_AJ_G0012640.1 mouse_genomes_project 4 48871406 48872026 + processed_pseudogene processed_pseudogene MGP_AJ_T0014395.1 MGP_AJ_G0012490.1 mouse_genomes_project 4 3035719 3036163 - processed_pseudogene processed_pseudogene MGP_AJ_T0068605.1 MGP_AJ_G0028895.1 mouse_genomes_project 4 131505556 131523886 - MGP_AJ_P0068605 Tmem50a protein_coding protein_coding MGP_AJ_T0068606.1 MGP_AJ_G0028895.1 mouse_genomes_project 4 131506098 131523877 - MGP_AJ_P0068606 Tmem50a protein_coding protein_coding MGP_AJ_T0066592.1 MGP_AJ_G0028462.1 mouse_genomes_project 4 98762513 98765941 + MGP_AJ_P0066592 Gm12789 protein_coding protein_coding MGP_AJ_T0066593.1 MGP_AJ_G0028462.1 mouse_genomes_project 4 98762747 98764972 + Gm12789 protein_coding processed_transcript MGP_AJ_T0066594.1 MGP_AJ_G0028462.1 mouse_genomes_project 4 98764003 98765902 + MGP_AJ_P0066594 Gm12789 protein_coding protein_coding MGP_AJ_T0065735.1 MGP_AJ_G0028235.1 mouse_genomes_project 4 45221820 45243943 + MGP_AJ_P0065735 Msantd3 protein_coding protein_coding MGP_AJ_T0065736.1 MGP_AJ_G0028235.1 mouse_genomes_project 4 45221964 45243602 + MGP_AJ_P0065736 Msantd3 protein_coding protein_coding MGP_AJ_T0065737.1 MGP_AJ_G0028235.1 mouse_genomes_project 4 45222422 45243944 + MGP_AJ_P0065737 Msantd3 protein_coding protein_coding MGP_AJ_T0065738.1 MGP_AJ_G0028235.1 mouse_genomes_project 4 45222431 45234461 + Msantd3 protein_coding processed_transcript MGP_AJ_T0065739.1 MGP_AJ_G0028235.1 mouse_genomes_project 4 45241971 45243943 + Msantd3 protein_coding processed_transcript MGP_AJ_T0014547.1 MGP_AJ_G0012642.1 mouse_genomes_project 4 48993424 48994813 - processed_pseudogene processed_pseudogene MGP_AJ_T0069144.1 MGP_AJ_G0029024.1 mouse_genomes_project 4 138888382 138997061 - MGP_AJ_P0069144 protein_coding protein_coding MGP_AJ_T0069145.1 MGP_AJ_G0029024.1 mouse_genomes_project 4 138897563 138903458 - protein_coding processed_transcript MGP_AJ_T0069146.1 MGP_AJ_G0029024.1 mouse_genomes_project 4 138903579 138944513 - MGP_AJ_P0069146 protein_coding protein_coding MGP_AJ_T0069147.1 MGP_AJ_G0029024.1 mouse_genomes_project 4 138924750 139027313 - MGP_AJ_P0069147 protein_coding protein_coding MGP_AJ_T0069148.1 MGP_AJ_G0029024.1 mouse_genomes_project 4 138924757 138996963 - MGP_AJ_P0069148 protein_coding protein_coding MGP_AJ_T0069149.1 MGP_AJ_G0029024.1 mouse_genomes_project 4 138924758 138931969 - protein_coding retained_intron MGP_AJ_T0069150.1 MGP_AJ_G0029024.1 mouse_genomes_project 4 138927056 138997061 - MGP_AJ_P0069150 protein_coding protein_coding MGP_AJ_T0069151.1 MGP_AJ_G0029024.1 mouse_genomes_project 4 138932273 138940138 - protein_coding retained_intron MGP_AJ_T0064781.1 MGP_AJ_G0028021.1 mouse_genomes_project 4 8688196 8690586 + MGP_AJ_P0064781 protein_coding protein_coding MGP_AJ_T0008034.1 MGP_AJ_G0006556.1 mouse_genomes_project 4 148329054 148342987 + Gm13049 lincRNA lincRNA MGP_AJ_T0014601.1 MGP_AJ_G0012696.1 mouse_genomes_project 4 71014773 71016329 + processed_pseudogene processed_pseudogene MGP_AJ_T0004612.1 MGP_AJ_G0003998.1 mouse_genomes_project 4 152248422 152255561 + Gm13111 antisense antisense MGP_AJ_T0098453.1 MGP_AJ_G0036437.1 mouse_genomes_project 4 153312236 153314376 + pseudogene pseudogene MGP_AJ_T0067431.1 MGP_AJ_G0028624.1 mouse_genomes_project 4 114562855 114607460 - MGP_AJ_P0067431 Kdm4a protein_coding protein_coding MGP_AJ_T0067432.1 MGP_AJ_G0028624.1 mouse_genomes_project 4 114562857 114607071 - MGP_AJ_P0067432 Kdm4a protein_coding protein_coding MGP_AJ_T0067433.1 MGP_AJ_G0028624.1 mouse_genomes_project 4 114562904 114607395 - MGP_AJ_P0067433 Kdm4a protein_coding protein_coding MGP_AJ_T0067434.1 MGP_AJ_G0028624.1 mouse_genomes_project 4 114567916 114607363 - MGP_AJ_P0067434 Kdm4a protein_coding protein_coding MGP_AJ_T0067435.1 MGP_AJ_G0028624.1 mouse_genomes_project 4 114571656 114572631 - Kdm4a protein_coding processed_transcript MGP_AJ_T0067436.1 MGP_AJ_G0028624.1 mouse_genomes_project 4 114574922 114587484 - Kdm4a protein_coding processed_transcript MGP_AJ_T0065162.1 MGP_AJ_G0028120.1 mouse_genomes_project 4 37939362 37946836 - MGP_AJ_P0065162 AI464131 protein_coding protein_coding MGP_AJ_T0065163.1 MGP_AJ_G0028120.1 mouse_genomes_project 4 37943254 37946428 - MGP_AJ_P0065163 AI464131 protein_coding protein_coding MGP_AJ_T0014687.1 MGP_AJ_G0012782.1 mouse_genomes_project 4 100342618 100343972 - processed_pseudogene processed_pseudogene MGP_AJ_T0065848.1 MGP_AJ_G0028273.1 mouse_genomes_project 4 53451594 53507986 - MGP_AJ_P0065848 Ctnnal1 protein_coding protein_coding MGP_AJ_T0065849.1 MGP_AJ_G0028273.1 mouse_genomes_project 4 53452799 53454978 - Ctnnal1 protein_coding processed_transcript MGP_AJ_T0065850.1 MGP_AJ_G0028273.1 mouse_genomes_project 4 53457646 53458314 - Ctnnal1 protein_coding processed_transcript MGP_AJ_T0065851.1 MGP_AJ_G0028273.1 mouse_genomes_project 4 53464681 53482396 - Ctnnal1 protein_coding processed_transcript MGP_AJ_T0065852.1 MGP_AJ_G0028273.1 mouse_genomes_project 4 53466626 53507966 - Ctnnal1 protein_coding processed_transcript MGP_AJ_T0065853.1 MGP_AJ_G0028273.1 mouse_genomes_project 4 53466889 53471868 - Ctnnal1 protein_coding processed_transcript MGP_AJ_T0065854.1 MGP_AJ_G0028273.1 mouse_genomes_project 4 53471539 53481224 - Ctnnal1 protein_coding processed_transcript MGP_AJ_T0065855.1 MGP_AJ_G0028273.1 mouse_genomes_project 4 53483504 53507952 - MGP_AJ_P0065855 Ctnnal1 protein_coding protein_coding MGP_AJ_T0065856.1 MGP_AJ_G0028273.1 mouse_genomes_project 4 53487472 53489108 - Ctnnal1 protein_coding processed_transcript MGP_AJ_T0066711.1 MGP_AJ_G0028488.1 mouse_genomes_project 4 103485590 103530603 - MGP_AJ_P0066711 Mroh7 protein_coding protein_coding MGP_AJ_T0066712.1 MGP_AJ_G0028488.1 mouse_genomes_project 4 103485597 103513016 - Mroh7 protein_coding processed_transcript MGP_AJ_T0066713.1 MGP_AJ_G0028488.1 mouse_genomes_project 4 103485597 103511533 - Mroh7 protein_coding retained_intron MGP_AJ_T0066714.1 MGP_AJ_G0028488.1 mouse_genomes_project 4 103485810 103512700 - Mroh7 protein_coding processed_transcript MGP_AJ_T0066715.1 MGP_AJ_G0028488.1 mouse_genomes_project 4 103495625 103503070 - Mroh7 protein_coding processed_transcript MGP_AJ_T0066716.1 MGP_AJ_G0028488.1 mouse_genomes_project 4 103511474 103530649 - MGP_AJ_P0066716 Mroh7 protein_coding protein_coding MGP_AJ_T0066717.1 MGP_AJ_G0028488.1 mouse_genomes_project 4 103524038 103533518 - MGP_AJ_P0066717 Mroh7 protein_coding protein_coding MGP_AJ_T0008029.1 MGP_AJ_G0006551.1 mouse_genomes_project 4 147246429 147254078 + Gm16188 lincRNA lincRNA MGP_AJ_T0007909.1 MGP_AJ_G0006465.1 mouse_genomes_project 4 96793805 96807408 + Gm12702 lincRNA lincRNA MGP_AJ_T0101182.1 MGP_AJ_G0039148.1 mouse_genomes_project 4 393174 393242 - Gm24016 snoRNA snoRNA MGP_AJ_T0069667.1 MGP_AJ_G0029151.1 mouse_genomes_project 4 151568704 151576141 - MGP_AJ_P0069667 Dffb protein_coding unknown_likely_coding MGP_AJ_T0069668.1 MGP_AJ_G0029151.1 mouse_genomes_project 4 151568712 151579359 - MGP_AJ_P0069668 Dffb protein_coding protein_coding MGP_AJ_T0069669.1 MGP_AJ_G0029151.1 mouse_genomes_project 4 151573336 151579284 - Dffb protein_coding processed_transcript MGP_AJ_T0069670.1 MGP_AJ_G0029151.1 mouse_genomes_project 4 151576692 151579290 - Dffb protein_coding retained_intron MGP_AJ_T0069671.1 MGP_AJ_G0029151.1 mouse_genomes_project 4 151576840 151579222 - MGP_AJ_P0069671 Dffb protein_coding unknown_likely_coding MGP_AJ_T0069672.1 MGP_AJ_G0029151.1 mouse_genomes_project 4 151578735 151579314 - Dffb protein_coding retained_intron MGP_AJ_T0067312.1 MGP_AJ_G0028603.1 mouse_genomes_project 4 113502460 113525774 + MGP_AJ_P0067312 Ptch2 protein_coding protein_coding MGP_AJ_T0067313.1 MGP_AJ_G0028603.1 mouse_genomes_project 4 113502481 113525774 + MGP_AJ_P0067313 Ptch2 protein_coding nonsense_mediated_decay MGP_AJ_T0067314.1 MGP_AJ_G0028603.1 mouse_genomes_project 4 113511562 113512974 + Ptch2 protein_coding retained_intron MGP_AJ_T0067315.1 MGP_AJ_G0028603.1 mouse_genomes_project 4 113511889 113515184 + MGP_AJ_P0067315 Ptch2 protein_coding nonsense_mediated_decay MGP_AJ_T0067316.1 MGP_AJ_G0028603.1 mouse_genomes_project 4 113516903 113517757 + Ptch2 protein_coding retained_intron MGP_AJ_T0067317.1 MGP_AJ_G0028603.1 mouse_genomes_project 4 113522586 113526695 + Ptch2 protein_coding retained_intron MGP_AJ_T0004491.1 MGP_AJ_G0003904.1 mouse_genomes_project 4 99768090 99790524 - Gm12709 antisense antisense MGP_AJ_T0064659.1 MGP_AJ_G0027997.1 mouse_genomes_project 4 5014590 5087470 + MGP_AJ_P0064659 Rab2a protein_coding protein_coding MGP_AJ_T0067721.1 MGP_AJ_G0028702.1 mouse_genomes_project 4 120319776 120336541 - MGP_AJ_P0067721 Akirin1 protein_coding protein_coding MGP_AJ_T0067722.1 MGP_AJ_G0028702.1 mouse_genomes_project 4 120323982 120329676 - Akirin1 protein_coding processed_transcript MGP_AJ_T0067723.1 MGP_AJ_G0028702.1 mouse_genomes_project 4 120325108 120336427 - Akirin1 protein_coding processed_transcript MGP_AJ_T0067111.1 MGP_AJ_G0028562.1 mouse_genomes_project 4 111894743 111911137 + MGP_AJ_P0067111 Cyp4a10 protein_coding protein_coding MGP_AJ_T0067112.1 MGP_AJ_G0028562.1 mouse_genomes_project 4 111894767 111911134 + MGP_AJ_P0067112 Cyp4a10 protein_coding protein_coding MGP_AJ_T0014637.1 MGP_AJ_G0012732.1 mouse_genomes_project 4 83182363 83182945 - processed_pseudogene processed_pseudogene MGP_AJ_T0004438.1 MGP_AJ_G0003864.1 mouse_genomes_project 4 35853916 35908142 - Gm17094 antisense antisense MGP_AJ_T0014561.1 MGP_AJ_G0012656.1 mouse_genomes_project 4 51788539 51789148 + processed_pseudogene processed_pseudogene MGP_AJ_T0014481.1 MGP_AJ_G0012576.1 mouse_genomes_project 4 26658129 26658664 + processed_pseudogene processed_pseudogene MGP_AJ_T0069563.1 MGP_AJ_G0029135.1 mouse_genomes_project 4 149574398 149588463 + Nol9 protein_coding retained_intron MGP_AJ_T0069564.1 MGP_AJ_G0029135.1 mouse_genomes_project 4 149574404 149596428 + MGP_AJ_P0069564 Nol9 protein_coding protein_coding MGP_AJ_T0069565.1 MGP_AJ_G0029135.1 mouse_genomes_project 4 149574413 149592807 + Nol9 protein_coding retained_intron MGP_AJ_T0069566.1 MGP_AJ_G0029135.1 mouse_genomes_project 4 149574413 149597955 + MGP_AJ_P0069566 Nol9 protein_coding protein_coding MGP_AJ_T0069567.1 MGP_AJ_G0029135.1 mouse_genomes_project 4 149574440 149596446 + MGP_AJ_P0069567 Nol9 protein_coding nonsense_mediated_decay MGP_AJ_T0008033.1 MGP_AJ_G0006555.1 mouse_genomes_project 4 148163698 148174958 - Gm16079 lincRNA lincRNA MGP_AJ_T0066380.1 MGP_AJ_G0028409.1 mouse_genomes_project 4 88968720 88969876 - MGP_AJ_P0066380 Gm12666 protein_coding protein_coding MGP_AJ_T0014405.1 MGP_AJ_G0012500.1 mouse_genomes_project 4 7077286 7077577 + processed_pseudogene processed_pseudogene MGP_AJ_T0067946.1 MGP_AJ_G0028759.1 mouse_genomes_project 4 124593397 124636700 - MGP_AJ_P0067946 CK137956 protein_coding protein_coding MGP_AJ_T0099959.1 MGP_AJ_G0037925.1 mouse_genomes_project 4 123761858 123761964 - Gm25600 snRNA snRNA MGP_AJ_T0099934.1 MGP_AJ_G0037900.1 mouse_genomes_project 4 93618896 93618960 + Gm27521 snRNA snRNA MGP_AJ_T0014636.1 MGP_AJ_G0012731.1 mouse_genomes_project 4 83174972 83175301 - processed_pseudogene processed_pseudogene MGP_AJ_T0069466.1 MGP_AJ_G0029117.1 mouse_genomes_project 4 147669576 147684156 - MGP_AJ_P0069466 Car6 protein_coding protein_coding MGP_AJ_T0069467.1 MGP_AJ_G0029117.1 mouse_genomes_project 4 147669576 147681278 - MGP_AJ_P0069467 Car6 protein_coding protein_coding MGP_AJ_T0069468.1 MGP_AJ_G0029117.1 mouse_genomes_project 4 147669773 147678935 - Car6 protein_coding processed_transcript MGP_AJ_T0069469.1 MGP_AJ_G0029117.1 mouse_genomes_project 4 147670842 147681011 - Car6 protein_coding processed_transcript MGP_AJ_T0066191.1 MGP_AJ_G0028360.1 mouse_genomes_project 4 79519539 79580800 - MGP_AJ_P0066191 Zdhhc21 protein_coding protein_coding MGP_AJ_T0066192.1 MGP_AJ_G0028360.1 mouse_genomes_project 4 79524844 79580688 - MGP_AJ_P0066192 Zdhhc21 protein_coding nonsense_mediated_decay MGP_AJ_T0066193.1 MGP_AJ_G0028360.1 mouse_genomes_project 4 79527006 79581085 - MGP_AJ_P0066193 Zdhhc21 protein_coding protein_coding MGP_AJ_T0066194.1 MGP_AJ_G0028360.1 mouse_genomes_project 4 79558863 79571986 - MGP_AJ_P0066194 Zdhhc21 protein_coding protein_coding MGP_AJ_T0066195.1 MGP_AJ_G0028360.1 mouse_genomes_project 4 79560920 79580681 - Zdhhc21 protein_coding retained_intron MGP_AJ_T0066196.1 MGP_AJ_G0028360.1 mouse_genomes_project 4 79568789 79580700 - MGP_AJ_P0066196 Zdhhc21 protein_coding protein_coding MGP_AJ_T0007868.1 MGP_AJ_G0006428.1 mouse_genomes_project 4 54838427 54868331 + Gm26889 lincRNA lincRNA MGP_AJ_T0066678.1 MGP_AJ_G0028476.1 mouse_genomes_project 4 101716328 101821112 + MGP_AJ_P0066678 1700024P16Rik protein_coding protein_coding MGP_AJ_T0066679.1 MGP_AJ_G0028476.1 mouse_genomes_project 4 101716396 101821112 + MGP_AJ_P0066679 1700024P16Rik protein_coding protein_coding MGP_AJ_T0014422.1 MGP_AJ_G0012517.1 mouse_genomes_project 4 12023185 12023615 + processed_pseudogene processed_pseudogene MGP_AJ_T0011561.1 MGP_AJ_G0009683.1 mouse_genomes_project 4 31105745 31106052 + Gm22849 misc_RNA misc_RNA MGP_AJ_T0067489.1 MGP_AJ_G0028640.1 mouse_genomes_project 4 115148196 115149144 + MGP_AJ_P0067489 Olfr1339 protein_coding protein_coding MGP_AJ_T0099893.1 MGP_AJ_G0037859.1 mouse_genomes_project 4 5682948 5683054 + Gm23423 snRNA snRNA MGP_AJ_T0014763.1 MGP_AJ_G0012858.1 mouse_genomes_project 4 121314806 121315460 + processed_pseudogene processed_pseudogene MGP_AJ_T0099019.1 MGP_AJ_G0036996.1 mouse_genomes_project 4 28646189 28661605 + Bach2it1 sense_intronic sense_intronic MGP_AJ_T0067157.1 MGP_AJ_G0028574.1 mouse_genomes_project 4 112305158 112315518 - MGP_AJ_P0067157 Dmbx1 protein_coding protein_coding MGP_AJ_T0067158.1 MGP_AJ_G0028574.1 mouse_genomes_project 4 112305158 112329459 - MGP_AJ_P0067158 Dmbx1 protein_coding protein_coding MGP_AJ_T0067159.1 MGP_AJ_G0028574.1 mouse_genomes_project 4 112305159 112329459 - MGP_AJ_P0067159 Dmbx1 protein_coding protein_coding MGP_AJ_T0066832.1 MGP_AJ_G0028506.1 mouse_genomes_project 4 104683141 104690801 + MGP_AJ_P0066832 Magoh protein_coding protein_coding MGP_AJ_T0066833.1 MGP_AJ_G0028506.1 mouse_genomes_project 4 104686375 104690764 + Magoh protein_coding processed_transcript MGP_AJ_T0008037.1 MGP_AJ_G0006559.1 mouse_genomes_project 4 150801976 150802396 + Gm13174 lincRNA lincRNA MGP_AJ_T0069553.1 MGP_AJ_G0029133.1 mouse_genomes_project 4 149553857 149561745 - MGP_AJ_P0069553 Zbtb48 protein_coding nonsense_mediated_decay MGP_AJ_T0069554.1 MGP_AJ_G0029133.1 mouse_genomes_project 4 149553857 149561745 - MGP_AJ_P0069554 Zbtb48 protein_coding protein_coding MGP_AJ_T0069555.1 MGP_AJ_G0029133.1 mouse_genomes_project 4 149553859 149561755 - Zbtb48 protein_coding retained_intron MGP_AJ_T0069556.1 MGP_AJ_G0029133.1 mouse_genomes_project 4 149553883 149554700 - Zbtb48 protein_coding processed_transcript MGP_AJ_T0069557.1 MGP_AJ_G0029133.1 mouse_genomes_project 4 149555192 149556190 - Zbtb48 protein_coding processed_transcript MGP_AJ_T0069558.1 MGP_AJ_G0029133.1 mouse_genomes_project 4 149555675 149560528 - MGP_AJ_P0069558 Zbtb48 protein_coding nonsense_mediated_decay MGP_AJ_T0069559.1 MGP_AJ_G0029133.1 mouse_genomes_project 4 149556569 149560131 - Zbtb48 protein_coding retained_intron MGP_AJ_T0069560.1 MGP_AJ_G0029133.1 mouse_genomes_project 4 149560561 149561721 - MGP_AJ_P0069560 Zbtb48 protein_coding protein_coding MGP_AJ_T0066333.1 MGP_AJ_G0028383.1 mouse_genomes_project 4 85345872 85348068 - MGP_AJ_P0066333 Ifna15 protein_coding protein_coding MGP_AJ_T0068866.1 MGP_AJ_G0028951.1 mouse_genomes_project 4 134949547 135002902 + MGP_AJ_P0068866 Kif17 protein_coding protein_coding MGP_AJ_T0068869.1 MGP_AJ_G0028951.1 mouse_genomes_project 4 134961335 135002427 + MGP_AJ_P0068869 Kif17 protein_coding protein_coding MGP_AJ_T0068870.1 MGP_AJ_G0028951.1 mouse_genomes_project 4 134961575 135002317 + MGP_AJ_P0068870 Kif17 protein_coding protein_coding MGP_AJ_T0068871.1 MGP_AJ_G0028951.1 mouse_genomes_project 4 134961602 134985971 + Kif17 protein_coding retained_intron MGP_AJ_T0014459.1 MGP_AJ_G0012554.1 mouse_genomes_project 4 21866239 21866566 + processed_pseudogene processed_pseudogene MGP_AJ_T0004464.1 MGP_AJ_G0003887.1 mouse_genomes_project 4 59387386 59393409 - Gm11209 antisense antisense MGP_AJ_T0069548.1 MGP_AJ_G0029130.1 mouse_genomes_project 4 149514384 149521391 - MGP_AJ_P0069548 Thap3 protein_coding protein_coding MGP_AJ_T0069549.1 MGP_AJ_G0029130.1 mouse_genomes_project 4 149514547 149521364 - MGP_AJ_P0069549 Thap3 protein_coding protein_coding MGP_AJ_T0069550.1 MGP_AJ_G0029130.1 mouse_genomes_project 4 149517396 149521374 - Thap3 protein_coding retained_intron MGP_AJ_T0014803.1 MGP_AJ_G0012898.1 mouse_genomes_project 4 133888673 133889360 - processed_pseudogene processed_pseudogene MGP_AJ_T0069019.1 MGP_AJ_G0028994.1 mouse_genomes_project 4 137771161 137776558 + MGP_AJ_P0069019 Mfap2 protein_coding protein_coding MGP_AJ_T0069020.1 MGP_AJ_G0028994.1 mouse_genomes_project 4 137771380 137775756 + Mfap2 protein_coding processed_transcript MGP_AJ_T0069021.1 MGP_AJ_G0028994.1 mouse_genomes_project 4 137771387 137776728 + MGP_AJ_P0069021 Mfap2 protein_coding protein_coding MGP_AJ_T0007912.1 MGP_AJ_G0006468.1 mouse_genomes_project 4 98094750 98104841 - E130102H24Rik lincRNA lincRNA MGP_AJ_T0007914.1 MGP_AJ_G0006468.1 mouse_genomes_project 4 98104634 98105328 - E130102H24Rik lincRNA lincRNA MGP_AJ_T0069614.1 MGP_AJ_G0029144.1 mouse_genomes_project 4 149866135 149877725 - MGP_AJ_P0069614 Rnf207 protein_coding protein_coding MGP_AJ_T0069615.1 MGP_AJ_G0029144.1 mouse_genomes_project 4 149866427 149868150 - Rnf207 protein_coding retained_intron MGP_AJ_T0069616.1 MGP_AJ_G0029144.1 mouse_genomes_project 4 149870500 149877575 - MGP_AJ_P0069616 Rnf207 protein_coding protein_coding MGP_AJ_T0069617.1 MGP_AJ_G0029144.1 mouse_genomes_project 4 149870673 149872520 - Rnf207 protein_coding retained_intron MGP_AJ_T0069618.1 MGP_AJ_G0029144.1 mouse_genomes_project 4 149870832 149872465 - Rnf207 protein_coding retained_intron MGP_AJ_T0069619.1 MGP_AJ_G0029144.1 mouse_genomes_project 4 149871950 149872517 - Rnf207 protein_coding retained_intron MGP_AJ_T0069620.1 MGP_AJ_G0029144.1 mouse_genomes_project 4 149872509 149877598 - MGP_AJ_P0069620 Rnf207 protein_coding nonsense_mediated_decay MGP_AJ_T0069621.1 MGP_AJ_G0029144.1 mouse_genomes_project 4 149872519 149875082 - Rnf207 protein_coding retained_intron MGP_AJ_T0069622.1 MGP_AJ_G0029144.1 mouse_genomes_project 4 149873669 149878110 - Rnf207 protein_coding retained_intron MGP_AJ_T0069623.1 MGP_AJ_G0029144.1 mouse_genomes_project 4 149873671 149877736 - Rnf207 protein_coding retained_intron MGP_AJ_T0069624.1 MGP_AJ_G0029144.1 mouse_genomes_project 4 149874002 149877742 - Rnf207 protein_coding retained_intron MGP_AJ_T0069625.1 MGP_AJ_G0029144.1 mouse_genomes_project 4 149874577 149875445 - Rnf207 protein_coding retained_intron MGP_AJ_T0004451.1 MGP_AJ_G0003876.1 mouse_genomes_project 4 41677223 41680943 + 1700055D18Rik antisense antisense MGP_AJ_T0004452.1 MGP_AJ_G0003876.1 mouse_genomes_project 4 41678366 41679936 + 1700055D18Rik antisense antisense MGP_AJ_T0065819.1 MGP_AJ_G0028263.1 mouse_genomes_project 4 50412787 50421625 + MGP_AJ_P0065819 Tal2 protein_coding protein_coding MGP_AJ_T0014697.1 MGP_AJ_G0012792.1 mouse_genomes_project 4 103576651 103576865 + processed_pseudogene processed_pseudogene MGP_AJ_T0069975.1 MGP_AJ_G0029206.1 mouse_genomes_project 4 153599669 153602823 - MGP_AJ_P0069975 B3galt6 protein_coding protein_coding MGP_AJ_T0004520.1 MGP_AJ_G0003926.1 mouse_genomes_project 4 115050129 115053400 - Gm12853 antisense antisense MGP_AJ_T0014695.1 MGP_AJ_G0012790.1 mouse_genomes_project 4 102937019 102938687 - processed_pseudogene processed_pseudogene MGP_AJ_T0066726.1 MGP_AJ_G0028491.1 mouse_genomes_project 4 103717728 103837885 + Ssbp3 protein_coding processed_transcript MGP_AJ_T0066727.1 MGP_AJ_G0028491.1 mouse_genomes_project 4 103718497 103857057 + MGP_AJ_P0066727 Ssbp3 protein_coding protein_coding MGP_AJ_T0066728.1 MGP_AJ_G0028491.1 mouse_genomes_project 4 103718538 103845560 + MGP_AJ_P0066728 Ssbp3 protein_coding protein_coding MGP_AJ_T0066729.1 MGP_AJ_G0028491.1 mouse_genomes_project 4 103718560 103855930 + MGP_AJ_P0066729 Ssbp3 protein_coding protein_coding MGP_AJ_T0066730.1 MGP_AJ_G0028491.1 mouse_genomes_project 4 103718694 103855861 + MGP_AJ_P0066730 Ssbp3 protein_coding protein_coding MGP_AJ_T0066731.1 MGP_AJ_G0028491.1 mouse_genomes_project 4 103718894 103817406 + Ssbp3 protein_coding processed_transcript MGP_AJ_T0066732.1 MGP_AJ_G0028491.1 mouse_genomes_project 4 103719331 103855878 + Ssbp3 protein_coding processed_transcript MGP_AJ_T0066733.1 MGP_AJ_G0028491.1 mouse_genomes_project 4 103730208 103837837 + Ssbp3 protein_coding processed_transcript MGP_AJ_T0066734.1 MGP_AJ_G0028491.1 mouse_genomes_project 4 103730248 103845066 + Ssbp3 protein_coding processed_transcript MGP_AJ_T0066735.1 MGP_AJ_G0028491.1 mouse_genomes_project 4 103748664 103855906 + Ssbp3 protein_coding processed_transcript MGP_AJ_T0066736.1 MGP_AJ_G0028491.1 mouse_genomes_project 4 103762632 103856055 + Ssbp3 protein_coding processed_transcript MGP_AJ_T0066737.1 MGP_AJ_G0028491.1 mouse_genomes_project 4 103773096 103837883 + MGP_AJ_P0066737 Ssbp3 protein_coding protein_coding MGP_AJ_T0066738.1 MGP_AJ_G0028491.1 mouse_genomes_project 4 103835014 103844181 + Ssbp3 protein_coding processed_transcript MGP_AJ_T0066739.1 MGP_AJ_G0028491.1 mouse_genomes_project 4 103837647 103838301 + Ssbp3 protein_coding processed_transcript MGP_AJ_T0066740.1 MGP_AJ_G0028491.1 mouse_genomes_project 4 103845019 103855882 + Ssbp3 protein_coding processed_transcript MGP_AJ_T0066741.1 MGP_AJ_G0028491.1 mouse_genomes_project 4 103845050 103847475 + Ssbp3 protein_coding processed_transcript MGP_AJ_T0066742.1 MGP_AJ_G0028491.1 mouse_genomes_project 4 103854316 103855813 + Ssbp3 protein_coding processed_transcript MGP_AJ_T0069378.1 MGP_AJ_G0029101.1 mouse_genomes_project 4 146590380 146607035 - MGP_AJ_P0069378 Pgd protein_coding protein_coding MGP_AJ_T0069379.1 MGP_AJ_G0029101.1 mouse_genomes_project 4 146595519 146600327 - Pgd protein_coding retained_intron MGP_AJ_T0069380.1 MGP_AJ_G0029101.1 mouse_genomes_project 4 146600254 146607099 - Pgd protein_coding retained_intron MGP_AJ_T0069381.1 MGP_AJ_G0029101.1 mouse_genomes_project 4 146600620 146601982 - Pgd protein_coding retained_intron MGP_AJ_T0069382.1 MGP_AJ_G0029101.1 mouse_genomes_project 4 146601711 146606988 - Pgd protein_coding retained_intron MGP_AJ_T0001427.1 MGP_AJ_G0001349.1 mouse_genomes_project 4 137054265 137056912 - TEC TEC MGP_AJ_T0067437.1 MGP_AJ_G0028625.1 mouse_genomes_project 4 114629059 114712187 - MGP_AJ_P0067437 Ptprf protein_coding protein_coding MGP_AJ_T0067438.1 MGP_AJ_G0028625.1 mouse_genomes_project 4 114629835 114638523 - Ptprf protein_coding processed_transcript MGP_AJ_T0067439.1 MGP_AJ_G0028625.1 mouse_genomes_project 4 114629851 114657238 - MGP_AJ_P0067439 Ptprf protein_coding protein_coding MGP_AJ_T0067440.1 MGP_AJ_G0028625.1 mouse_genomes_project 4 114629856 114656809 - MGP_AJ_P0067440 Ptprf protein_coding protein_coding MGP_AJ_T0067441.1 MGP_AJ_G0028625.1 mouse_genomes_project 4 114630706 114631588 - Ptprf protein_coding processed_transcript MGP_AJ_T0067442.1 MGP_AJ_G0028625.1 mouse_genomes_project 4 114646957 114651915 - Ptprf protein_coding processed_transcript MGP_AJ_T0014805.1 MGP_AJ_G0012900.1 mouse_genomes_project 4 135127387 135127568 + processed_pseudogene processed_pseudogene MGP_AJ_T0011556.1 MGP_AJ_G0009678.1 mouse_genomes_project 4 15257081 15257369 + Gm25971 misc_RNA misc_RNA MGP_AJ_T0067943.1 MGP_AJ_G0028757.1 mouse_genomes_project 4 124011066 124014064 - MGP_AJ_P0067943 Gjb4 protein_coding protein_coding MGP_AJ_T0067944.1 MGP_AJ_G0028757.1 mouse_genomes_project 4 124011066 124014064 - MGP_AJ_P0067944 Gjb4 protein_coding protein_coding MGP_AJ_T0067585.1 MGP_AJ_G0028665.1 mouse_genomes_project 4 116187603 116330852 + Hivep3 protein_coding processed_transcript MGP_AJ_T0067586.1 MGP_AJ_G0028665.1 mouse_genomes_project 4 116187603 116271491 + Hivep3 protein_coding processed_transcript MGP_AJ_T0067587.1 MGP_AJ_G0028665.1 mouse_genomes_project 4 116187615 116190591 + MGP_AJ_P0067587 Hivep3 protein_coding protein_coding MGP_AJ_T0067588.1 MGP_AJ_G0028665.1 mouse_genomes_project 4 116187660 116329746 + Hivep3 protein_coding processed_transcript MGP_AJ_T0067589.1 MGP_AJ_G0028665.1 mouse_genomes_project 4 116215534 116330215 + Hivep3 protein_coding processed_transcript MGP_AJ_T0067590.1 MGP_AJ_G0028665.1 mouse_genomes_project 4 116271073 116457033 + Hivep3 protein_coding processed_transcript MGP_AJ_T0067591.1 MGP_AJ_G0028665.1 mouse_genomes_project 4 116271097 116330852 + Hivep3 protein_coding processed_transcript MGP_AJ_T0067592.1 MGP_AJ_G0028665.1 mouse_genomes_project 4 116271237 116596551 + MGP_AJ_P0067592 Hivep3 protein_coding protein_coding MGP_AJ_T0067593.1 MGP_AJ_G0028665.1 mouse_genomes_project 4 116553366 116591048 + MGP_AJ_P0067593 Hivep3 protein_coding protein_coding MGP_AJ_T0067583.1 MGP_AJ_G0028664.1 mouse_genomes_project 4 116110689 116113818 - MGP_AJ_P0067583 Guca2b protein_coding protein_coding MGP_AJ_T0067584.1 MGP_AJ_G0028664.1 mouse_genomes_project 4 116110689 116113991 - MGP_AJ_P0067584 Guca2b protein_coding protein_coding MGP_AJ_T0067618.1 MGP_AJ_G0028674.1 mouse_genomes_project 4 117234499 117294020 - MGP_AJ_P0067618 Nfyc protein_coding protein_coding MGP_AJ_T0067619.1 MGP_AJ_G0028674.1 mouse_genomes_project 4 117234499 117310621 - MGP_AJ_P0067619 Nfyc protein_coding protein_coding MGP_AJ_T0067620.1 MGP_AJ_G0028674.1 mouse_genomes_project 4 117234499 117304008 - MGP_AJ_P0067620 Nfyc protein_coding protein_coding MGP_AJ_T0067621.1 MGP_AJ_G0028674.1 mouse_genomes_project 4 117235014 117239708 - Nfyc protein_coding processed_transcript MGP_AJ_T0067622.1 MGP_AJ_G0028674.1 mouse_genomes_project 4 117235237 117268953 - MGP_AJ_P0067622 Nfyc protein_coding protein_coding MGP_AJ_T0067623.1 MGP_AJ_G0028674.1 mouse_genomes_project 4 117235257 117242936 - Nfyc protein_coding processed_transcript MGP_AJ_T0067624.1 MGP_AJ_G0028674.1 mouse_genomes_project 4 117239197 117245810 - Nfyc protein_coding processed_transcript MGP_AJ_T0067625.1 MGP_AJ_G0028674.1 mouse_genomes_project 4 117242759 117303986 - MGP_AJ_P0067625 Nfyc protein_coding protein_coding MGP_AJ_T0067626.1 MGP_AJ_G0028674.1 mouse_genomes_project 4 117246471 117303998 - MGP_AJ_P0067626 Nfyc protein_coding protein_coding MGP_AJ_T0067627.1 MGP_AJ_G0028674.1 mouse_genomes_project 4 117257640 117304009 - MGP_AJ_P0067627 Nfyc protein_coding protein_coding MGP_AJ_T0066590.1 MGP_AJ_G0028460.1 mouse_genomes_project 4 98656663 98676559 + MGP_AJ_P0066590 Gm12800 protein_coding protein_coding MGP_AJ_T0069531.1 MGP_AJ_G0029128.1 mouse_genomes_project 4 148600925 148602805 + MGP_AJ_P0069531 Gm13090 protein_coding protein_coding MGP_AJ_T0014836.1 MGP_AJ_G0012931.1 mouse_genomes_project 4 149692117 149692652 - processed_pseudogene processed_pseudogene MGP_AJ_T0068917.1 MGP_AJ_G0028969.1 mouse_genomes_project 4 135772714 135787076 - MGP_AJ_P0068917 Htr6 protein_coding protein_coding MGP_AJ_T0068918.1 MGP_AJ_G0028969.1 mouse_genomes_project 4 135773015 135786295 - MGP_AJ_P0068918 Htr6 protein_coding protein_coding MGP_AJ_T0007907.1 MGP_AJ_G0006463.1 mouse_genomes_project 4 96340686 96344202 + Gm12690 lincRNA lincRNA MGP_AJ_T0014471.1 MGP_AJ_G0012566.1 mouse_genomes_project 4 24540798 24541821 + processed_pseudogene processed_pseudogene MGP_AJ_T0068744.1 MGP_AJ_G0028925.1 mouse_genomes_project 4 133058850 133080428 + MGP_AJ_P0068744 Htr1d protein_coding protein_coding MGP_AJ_T0068745.1 MGP_AJ_G0028925.1 mouse_genomes_project 4 133058852 133079789 + MGP_AJ_P0068745 Htr1d protein_coding protein_coding MGP_AJ_T0068746.1 MGP_AJ_G0028925.1 mouse_genomes_project 4 133058856 133079789 + MGP_AJ_P0068746 Htr1d protein_coding protein_coding MGP_AJ_T0068747.1 MGP_AJ_G0028925.1 mouse_genomes_project 4 133059924 133078003 + Htr1d protein_coding processed_transcript MGP_AJ_T0014495.1 MGP_AJ_G0012590.1 mouse_genomes_project 4 30803101 30803999 - processed_pseudogene processed_pseudogene MGP_AJ_T0068878.1 MGP_AJ_G0028955.1 mouse_genomes_project 4 135096950 135099388 - MGP_AJ_P0068878 Fam43b protein_coding protein_coding MGP_AJ_T0014788.1 MGP_AJ_G0012883.1 mouse_genomes_project 4 130789630 130789951 - processed_pseudogene processed_pseudogene MGP_AJ_T0004538.1 MGP_AJ_G0003941.1 mouse_genomes_project 4 124801471 124835174 - Csmd2os antisense antisense MGP_AJ_T0004539.1 MGP_AJ_G0003941.1 mouse_genomes_project 4 124801471 124832791 - Csmd2os antisense antisense MGP_AJ_T0004469.1 MGP_AJ_G0003892.1 mouse_genomes_project 4 79426684 79427591 + Gm11269 antisense antisense MGP_AJ_T0065439.1 MGP_AJ_G0028170.1 mouse_genomes_project 4 40208617 40220241 - Gba2 protein_coding retained_intron MGP_AJ_T0065440.1 MGP_AJ_G0028170.1 mouse_genomes_project 4 40208617 40219793 - Gba2 protein_coding retained_intron MGP_AJ_T0065441.1 MGP_AJ_G0028170.1 mouse_genomes_project 4 40208617 40220577 - MGP_AJ_P0065441 Gba2 protein_coding protein_coding MGP_AJ_T0065442.1 MGP_AJ_G0028170.1 mouse_genomes_project 4 40208618 40219793 - Gba2 protein_coding retained_intron MGP_AJ_T0065443.1 MGP_AJ_G0028170.1 mouse_genomes_project 4 40210083 40211332 - Gba2 protein_coding retained_intron MGP_AJ_T0065444.1 MGP_AJ_G0028170.1 mouse_genomes_project 4 40212052 40215758 - Gba2 protein_coding processed_transcript MGP_AJ_T0065445.1 MGP_AJ_G0028170.1 mouse_genomes_project 4 40212465 40220340 - MGP_AJ_P0065445 Gba2 protein_coding protein_coding MGP_AJ_T0007947.1 MGP_AJ_G0006495.1 mouse_genomes_project 4 120912841 120918981 - 4933435F18Rik lincRNA lincRNA MGP_AJ_T0007948.1 MGP_AJ_G0006495.1 mouse_genomes_project 4 120917878 120918940 - 4933435F18Rik lincRNA lincRNA MGP_AJ_T0014621.1 MGP_AJ_G0012716.1 mouse_genomes_project 4 76773106 76773605 - processed_pseudogene processed_pseudogene MGP_AJ_T0066085.1 MGP_AJ_G0028335.1 mouse_genomes_project 4 60601652 60633747 - MGP_AJ_P0066085 Tnfsf8 protein_coding protein_coding MGP_AJ_T0065192.1 MGP_AJ_G0028128.1 mouse_genomes_project 4 38177432 38185013 - MGP_AJ_P0065192 Arid3c protein_coding protein_coding MGP_AJ_T0065193.1 MGP_AJ_G0028128.1 mouse_genomes_project 4 38177735 38183878 - MGP_AJ_P0065193 Arid3c protein_coding protein_coding MGP_AJ_T0065194.1 MGP_AJ_G0028128.1 mouse_genomes_project 4 38177735 38183878 - MGP_AJ_P0065194 Arid3c protein_coding protein_coding MGP_AJ_T0065195.1 MGP_AJ_G0028128.1 mouse_genomes_project 4 38183517 38185013 - MGP_AJ_P0065195 Arid3c protein_coding protein_coding MGP_AJ_T0101195.1 MGP_AJ_G0039161.1 mouse_genomes_project 4 30113051 30113176 - Gm24341 snoRNA snoRNA MGP_AJ_T0004603.1 MGP_AJ_G0003990.1 mouse_genomes_project 4 148059058 148060727 - Gm13091 antisense antisense MGP_AJ_T0099910.1 MGP_AJ_G0037876.1 mouse_genomes_project 4 37619504 37619607 - Gm24650 snRNA snRNA MGP_AJ_T0069739.1 MGP_AJ_G0029163.1 mouse_genomes_project 4 152277789 152279224 - MGP_AJ_P0069739 Actrt2 protein_coding protein_coding MGP_AJ_T0067318.1 MGP_AJ_G0028604.1 mouse_genomes_project 4 113529820 113532932 - Btbd19 protein_coding processed_transcript MGP_AJ_T0067319.1 MGP_AJ_G0028604.1 mouse_genomes_project 4 113530478 113532987 - Btbd19 protein_coding processed_transcript MGP_AJ_T0067320.1 MGP_AJ_G0028604.1 mouse_genomes_project 4 113530776 113536249 - MGP_AJ_P0067320 Btbd19 protein_coding protein_coding MGP_AJ_T0067321.1 MGP_AJ_G0028604.1 mouse_genomes_project 4 113531252 113532961 - Btbd19 protein_coding processed_transcript MGP_AJ_T0067322.1 MGP_AJ_G0028604.1 mouse_genomes_project 4 113531307 113531867 - Btbd19 protein_coding retained_intron MGP_AJ_T0067323.1 MGP_AJ_G0028604.1 mouse_genomes_project 4 113531330 113532479 - Btbd19 protein_coding retained_intron MGP_AJ_T0067324.1 MGP_AJ_G0028604.1 mouse_genomes_project 4 113531914 113536356 - MGP_AJ_P0067324 Btbd19 protein_coding nonsense_mediated_decay MGP_AJ_T0067325.1 MGP_AJ_G0028604.1 mouse_genomes_project 4 113532041 113536289 - MGP_AJ_P0067325 Btbd19 protein_coding nonsense_mediated_decay MGP_AJ_T0067326.1 MGP_AJ_G0028604.1 mouse_genomes_project 4 113534607 113535797 - Btbd19 protein_coding processed_transcript MGP_AJ_T0068486.1 MGP_AJ_G0028867.1 mouse_genomes_project 4 130583617 130604141 - MGP_AJ_P0068486 Lin28a protein_coding protein_coding MGP_AJ_T0068487.1 MGP_AJ_G0028867.1 mouse_genomes_project 4 130588000 130594085 - MGP_AJ_P0068487 Lin28a protein_coding protein_coding MGP_AJ_T0068488.1 MGP_AJ_G0028867.1 mouse_genomes_project 4 130588006 130591099 - MGP_AJ_P0068488 Lin28a protein_coding protein_coding MGP_AJ_T0068489.1 MGP_AJ_G0028867.1 mouse_genomes_project 4 130589628 130603682 - MGP_AJ_P0068489 Lin28a protein_coding protein_coding MGP_AJ_T0010592.1 MGP_AJ_G0008714.1 mouse_genomes_project 4 60013733 60013815 + Mir455 miRNA miRNA MGP_AJ_T0067262.1 MGP_AJ_G0028594.1 mouse_genomes_project 4 113109160 113110365 + MGP_AJ_P0067262 Ccdc163 protein_coding protein_coding MGP_AJ_T0067263.1 MGP_AJ_G0028594.1 mouse_genomes_project 4 113109171 113110842 + MGP_AJ_P0067263 Ccdc163 protein_coding protein_coding MGP_AJ_T0067264.1 MGP_AJ_G0028594.1 mouse_genomes_project 4 113109177 113110320 + Ccdc163 protein_coding processed_transcript MGP_AJ_T0067265.1 MGP_AJ_G0028594.1 mouse_genomes_project 4 113109186 113111064 + Ccdc163 protein_coding retained_intron MGP_AJ_T0067266.1 MGP_AJ_G0028594.1 mouse_genomes_project 4 113109266 113110068 + MGP_AJ_P0067266 Ccdc163 protein_coding protein_coding MGP_AJ_T0067267.1 MGP_AJ_G0028594.1 mouse_genomes_project 4 113109491 113115742 + MGP_AJ_P0067267 Ccdc163 protein_coding nonsense_mediated_decay MGP_AJ_T0067268.1 MGP_AJ_G0028594.1 mouse_genomes_project 4 113109579 113115745 + MGP_AJ_P0067268 Ccdc163 protein_coding protein_coding MGP_AJ_T0067269.1 MGP_AJ_G0028594.1 mouse_genomes_project 4 113113012 113142676 + Ccdc163 protein_coding processed_transcript MGP_AJ_T0067270.1 MGP_AJ_G0028594.1 mouse_genomes_project 4 113113310 113151831 + Ccdc163 protein_coding processed_transcript MGP_AJ_T0067271.1 MGP_AJ_G0028594.1 mouse_genomes_project 4 113113377 113115737 + MGP_AJ_P0067271 Ccdc163 protein_coding protein_coding MGP_AJ_T0007990.1 MGP_AJ_G0006522.1 mouse_genomes_project 4 128864575 128866867 + Snhg12 lincRNA lincRNA MGP_AJ_T0007991.1 MGP_AJ_G0006522.1 mouse_genomes_project 4 128864575 128866867 + Snhg12 lincRNA lincRNA MGP_AJ_T0007992.1 MGP_AJ_G0006522.1 mouse_genomes_project 4 128864575 128865869 + Snhg12 lincRNA lincRNA MGP_AJ_T0007993.1 MGP_AJ_G0006522.1 mouse_genomes_project 4 128864590 128866657 + Snhg12 lincRNA lincRNA MGP_AJ_T0007994.1 MGP_AJ_G0006522.1 mouse_genomes_project 4 128865526 128866867 + Snhg12 lincRNA lincRNA MGP_AJ_T0007995.1 MGP_AJ_G0006522.1 mouse_genomes_project 4 128865715 128866867 + Snhg12 lincRNA lincRNA MGP_AJ_T0007996.1 MGP_AJ_G0006522.1 mouse_genomes_project 4 128866084 128866867 + Snhg12 lincRNA lincRNA MGP_AJ_T0068039.1 MGP_AJ_G0028777.1 mouse_genomes_project 4 125961875 125983077 + MGP_AJ_P0068039 Sync protein_coding protein_coding MGP_AJ_T0068040.1 MGP_AJ_G0028777.1 mouse_genomes_project 4 125961889 125981881 + Sync protein_coding retained_intron MGP_AJ_T0065489.1 MGP_AJ_G0028184.1 mouse_genomes_project 4 40489632 40494409 + MGP_AJ_P0065489 Olfr155 protein_coding protein_coding MGP_AJ_T0065490.1 MGP_AJ_G0028184.1 mouse_genomes_project 4 40493430 40494602 + MGP_AJ_P0065490 Olfr155 protein_coding protein_coding MGP_AJ_T0014804.1 MGP_AJ_G0012899.1 mouse_genomes_project 4 134056180 134056547 + processed_pseudogene processed_pseudogene MGP_AJ_T0010608.1 MGP_AJ_G0008730.1 mouse_genomes_project 4 113993171 113993245 + Gm25559 miRNA miRNA MGP_AJ_T0065786.1 MGP_AJ_G0028252.1 mouse_genomes_project 4 49221359 49238780 + MGP_AJ_P0065786 Toporsl protein_coding protein_coding MGP_AJ_T0065787.1 MGP_AJ_G0028252.1 mouse_genomes_project 4 49233601 49238777 + MGP_AJ_P0065787 Toporsl protein_coding protein_coding MGP_AJ_T0069133.1 MGP_AJ_G0029021.1 mouse_genomes_project 4 138641128 138657877 - MGP_AJ_P0069133 Efhd2 protein_coding protein_coding MGP_AJ_T0070020.1 MGP_AJ_G0029218.1 mouse_genomes_project 4 153842004 153854240 + MGP_AJ_P0070020 Noc2l protein_coding protein_coding MGP_AJ_T0070021.1 MGP_AJ_G0029218.1 mouse_genomes_project 4 153842045 153854227 + MGP_AJ_P0070021 Noc2l protein_coding protein_coding MGP_AJ_T0065419.1 MGP_AJ_G0028167.1 mouse_genomes_project 4 40156591 40165328 - Tpm2 protein_coding processed_transcript MGP_AJ_T0065420.1 MGP_AJ_G0028167.1 mouse_genomes_project 4 40156591 40165485 - MGP_AJ_P0065420 Tpm2 protein_coding protein_coding MGP_AJ_T0065421.1 MGP_AJ_G0028167.1 mouse_genomes_project 4 40156591 40165354 - MGP_AJ_P0065421 Tpm2 protein_coding protein_coding MGP_AJ_T0065422.1 MGP_AJ_G0028167.1 mouse_genomes_project 4 40156592 40165278 - MGP_AJ_P0065422 Tpm2 protein_coding protein_coding MGP_AJ_T0065423.1 MGP_AJ_G0028167.1 mouse_genomes_project 4 40157562 40161560 - Tpm2 protein_coding processed_transcript MGP_AJ_T0065424.1 MGP_AJ_G0028167.1 mouse_genomes_project 4 40161558 40165655 - MGP_AJ_P0065424 Tpm2 protein_coding protein_coding MGP_AJ_T0067137.1 MGP_AJ_G0028570.1 mouse_genomes_project 4 112218256 112226328 + MGP_AJ_P0067137 Mob3c protein_coding protein_coding MGP_AJ_T0067138.1 MGP_AJ_G0028570.1 mouse_genomes_project 4 112218261 112221868 + Mob3c protein_coding retained_intron MGP_AJ_T0067139.1 MGP_AJ_G0028570.1 mouse_genomes_project 4 112218822 112221698 + MGP_AJ_P0067139 Mob3c protein_coding protein_coding MGP_AJ_T0069174.1 MGP_AJ_G0029038.1 mouse_genomes_project 4 140609455 140612629 + MGP_AJ_P0069174 protein_coding protein_coding MGP_AJ_T0069175.1 MGP_AJ_G0029038.1 mouse_genomes_project 4 140609457 140612980 + MGP_AJ_P0069175 protein_coding protein_coding MGP_AJ_T0069061.1 MGP_AJ_G0029002.1 mouse_genomes_project 4 138067525 138095628 + MGP_AJ_P0069061 Epha2 protein_coding protein_coding MGP_AJ_T0069062.1 MGP_AJ_G0029002.1 mouse_genomes_project 4 138068692 138075014 + Epha2 protein_coding processed_transcript MGP_AJ_T0069063.1 MGP_AJ_G0029002.1 mouse_genomes_project 4 138075173 138077238 + Epha2 protein_coding processed_transcript MGP_AJ_T0069064.1 MGP_AJ_G0029002.1 mouse_genomes_project 4 138083162 138087147 + Epha2 protein_coding processed_transcript MGP_AJ_T0099957.1 MGP_AJ_G0037923.1 mouse_genomes_project 4 121291844 121291947 - Gm24480 snRNA snRNA MGP_AJ_T0068259.1 MGP_AJ_G0028818.1 mouse_genomes_project 4 128419995 128446981 + MGP_AJ_P0068259 Srsf4 protein_coding protein_coding MGP_AJ_T0068260.1 MGP_AJ_G0028818.1 mouse_genomes_project 4 128420194 128438523 + MGP_AJ_P0068260 Srsf4 protein_coding nonsense_mediated_decay MGP_AJ_T0068261.1 MGP_AJ_G0028818.1 mouse_genomes_project 4 128430673 128443109 + MGP_AJ_P0068261 Srsf4 protein_coding nonsense_mediated_decay MGP_AJ_T0068262.1 MGP_AJ_G0028818.1 mouse_genomes_project 4 128431317 128446982 + MGP_AJ_P0068262 Srsf4 protein_coding unknown_likely_coding MGP_AJ_T0068263.1 MGP_AJ_G0028818.1 mouse_genomes_project 4 128431586 128446981 + Srsf4 protein_coding retained_intron MGP_AJ_T0008027.1 MGP_AJ_G0006549.1 mouse_genomes_project 4 145778767 145781855 - Gm13200 lincRNA lincRNA MGP_AJ_T0007801.1 MGP_AJ_G0006373.1 mouse_genomes_project 4 4089579 4102712 + 8430436N08Rik lincRNA lincRNA MGP_AJ_T0099944.1 MGP_AJ_G0037910.1 mouse_genomes_project 4 105347120 105347227 - Gm22345 snRNA snRNA MGP_AJ_T0066348.1 MGP_AJ_G0028394.1 mouse_genomes_project 4 85604716 85605303 + MGP_AJ_P0066348 protein_coding protein_coding MGP_AJ_T0069183.1 MGP_AJ_G0029044.1 mouse_genomes_project 4 140761980 140774009 + MGP_AJ_P0069183 Gm13103 protein_coding protein_coding MGP_AJ_T0069184.1 MGP_AJ_G0029044.1 mouse_genomes_project 4 140761990 140769597 + MGP_AJ_P0069184 Gm13103 protein_coding protein_coding MGP_AJ_T0069185.1 MGP_AJ_G0029044.1 mouse_genomes_project 4 140761992 140773607 + MGP_AJ_P0069185 Gm13103 protein_coding protein_coding MGP_AJ_T0014736.1 MGP_AJ_G0012831.1 mouse_genomes_project 4 114939498 114940090 + processed_pseudogene processed_pseudogene MGP_AJ_T0067954.1 MGP_AJ_G0028762.1 mouse_genomes_project 4 125244743 125251167 - Zscan20 protein_coding processed_transcript MGP_AJ_T0067955.1 MGP_AJ_G0028762.1 mouse_genomes_project 4 125244751 125271216 - MGP_AJ_P0067955 Zscan20 protein_coding protein_coding MGP_AJ_T0067956.1 MGP_AJ_G0028762.1 mouse_genomes_project 4 125246579 125271160 - MGP_AJ_P0067956 Zscan20 protein_coding nonsense_mediated_decay MGP_AJ_T0067957.1 MGP_AJ_G0028762.1 mouse_genomes_project 4 125262636 125271152 - Zscan20 protein_coding retained_intron MGP_AJ_T0067958.1 MGP_AJ_G0028762.1 mouse_genomes_project 4 125265574 125271113 - MGP_AJ_P0067958 Zscan20 protein_coding protein_coding MGP_AJ_T0067959.1 MGP_AJ_G0028762.1 mouse_genomes_project 4 125265608 125271099 - MGP_AJ_P0067959 Zscan20 protein_coding protein_coding MGP_AJ_T0007965.1 MGP_AJ_G0006504.1 mouse_genomes_project 4 125304162 125305139 + Gm12958 lincRNA lincRNA MGP_AJ_T0065503.1 MGP_AJ_G0028189.1 mouse_genomes_project 4 40680100 40731459 - MGP_AJ_P0065503 Gne protein_coding protein_coding MGP_AJ_T0065504.1 MGP_AJ_G0028189.1 mouse_genomes_project 4 40682835 40702070 - MGP_AJ_P0065504 Gne protein_coding nonsense_mediated_decay MGP_AJ_T0065505.1 MGP_AJ_G0028189.1 mouse_genomes_project 4 40682851 40719346 - MGP_AJ_P0065505 Gne protein_coding protein_coding MGP_AJ_T0065506.1 MGP_AJ_G0028189.1 mouse_genomes_project 4 40682855 40712990 - MGP_AJ_P0065506 Gne protein_coding nonsense_mediated_decay MGP_AJ_T0065507.1 MGP_AJ_G0028189.1 mouse_genomes_project 4 40682983 40713030 - MGP_AJ_P0065507 Gne protein_coding protein_coding MGP_AJ_T0065508.1 MGP_AJ_G0028189.1 mouse_genomes_project 4 40692729 40719192 - MGP_AJ_P0065508 Gne protein_coding nonsense_mediated_decay MGP_AJ_T0065509.1 MGP_AJ_G0028189.1 mouse_genomes_project 4 40699647 40713131 - MGP_AJ_P0065509 Gne protein_coding protein_coding MGP_AJ_T0065510.1 MGP_AJ_G0028189.1 mouse_genomes_project 4 40702077 40709946 - Gne protein_coding retained_intron MGP_AJ_T0065511.1 MGP_AJ_G0028189.1 mouse_genomes_project 4 40706472 40731449 - Gne protein_coding retained_intron MGP_AJ_T0065512.1 MGP_AJ_G0028189.1 mouse_genomes_project 4 40706640 40731205 - MGP_AJ_P0065512 Gne protein_coding protein_coding MGP_AJ_T0065513.1 MGP_AJ_G0028189.1 mouse_genomes_project 4 40706744 40719304 - Gne protein_coding processed_transcript MGP_AJ_T0065514.1 MGP_AJ_G0028189.1 mouse_genomes_project 4 40706763 40719170 - MGP_AJ_P0065514 Gne protein_coding protein_coding MGP_AJ_T0065515.1 MGP_AJ_G0028189.1 mouse_genomes_project 4 40706875 40719585 - MGP_AJ_P0065515 Gne protein_coding protein_coding MGP_AJ_T0065516.1 MGP_AJ_G0028189.1 mouse_genomes_project 4 40706884 40719586 - MGP_AJ_P0065516 Gne protein_coding protein_coding MGP_AJ_T0064601.1 MGP_AJ_G0027985.1 mouse_genomes_project 4 503599 508236 + MGP_AJ_P0064601 Chchd7 protein_coding protein_coding MGP_AJ_T0064602.1 MGP_AJ_G0027985.1 mouse_genomes_project 4 503599 508231 + MGP_AJ_P0064602 Chchd7 protein_coding protein_coding MGP_AJ_T0064603.1 MGP_AJ_G0027985.1 mouse_genomes_project 4 503601 508180 + MGP_AJ_P0064603 Chchd7 protein_coding protein_coding MGP_AJ_T0064604.1 MGP_AJ_G0027985.1 mouse_genomes_project 4 503625 508236 + MGP_AJ_P0064604 Chchd7 protein_coding protein_coding MGP_AJ_T0064605.1 MGP_AJ_G0027985.1 mouse_genomes_project 4 503625 508229 + MGP_AJ_P0064605 Chchd7 protein_coding protein_coding MGP_AJ_T0064606.1 MGP_AJ_G0027985.1 mouse_genomes_project 4 503625 515742 + MGP_AJ_P0064606 Chchd7 protein_coding nonsense_mediated_decay MGP_AJ_T0064607.1 MGP_AJ_G0027985.1 mouse_genomes_project 4 503625 508236 + MGP_AJ_P0064607 Chchd7 protein_coding protein_coding MGP_AJ_T0064608.1 MGP_AJ_G0027985.1 mouse_genomes_project 4 503625 507758 + MGP_AJ_P0064608 Chchd7 protein_coding protein_coding MGP_AJ_T0064609.1 MGP_AJ_G0027985.1 mouse_genomes_project 4 503631 508212 + MGP_AJ_P0064609 Chchd7 protein_coding protein_coding MGP_AJ_T0064610.1 MGP_AJ_G0027985.1 mouse_genomes_project 4 503754 508114 + MGP_AJ_P0064610 Chchd7 protein_coding protein_coding MGP_AJ_T0064611.1 MGP_AJ_G0027985.1 mouse_genomes_project 4 504133 506122 + Chchd7 protein_coding retained_intron MGP_AJ_T0064612.1 MGP_AJ_G0027985.1 mouse_genomes_project 4 504211 508234 + MGP_AJ_P0064612 Chchd7 protein_coding nonsense_mediated_decay MGP_AJ_T0064613.1 MGP_AJ_G0027985.1 mouse_genomes_project 4 505556 508233 + MGP_AJ_P0064613 Chchd7 protein_coding protein_coding MGP_AJ_T0064614.1 MGP_AJ_G0027985.1 mouse_genomes_project 4 508121 514907 + Chchd7 protein_coding processed_transcript MGP_AJ_T0064615.1 MGP_AJ_G0027985.1 mouse_genomes_project 4 511513 514568 + Chchd7 protein_coding retained_intron MGP_AJ_T0066539.1 MGP_AJ_G0028446.1 mouse_genomes_project 4 96537373 96601171 - MGP_AJ_P0066539 Itgb3bp protein_coding protein_coding MGP_AJ_T0066540.1 MGP_AJ_G0028446.1 mouse_genomes_project 4 96537873 96672415 - Itgb3bp protein_coding processed_transcript MGP_AJ_T0066541.1 MGP_AJ_G0028446.1 mouse_genomes_project 4 96539302 96601077 - Itgb3bp protein_coding processed_transcript MGP_AJ_T0066542.1 MGP_AJ_G0028446.1 mouse_genomes_project 4 96543969 96601119 - Itgb3bp protein_coding processed_transcript MGP_AJ_T0101206.1 MGP_AJ_G0039172.1 mouse_genomes_project 4 44595535 44595678 + Gm22670 snoRNA snoRNA MGP_AJ_T0067814.1 MGP_AJ_G0028729.1 mouse_genomes_project 4 122713370 122715332 + MGP_AJ_P0067814 Lsm10 protein_coding protein_coding MGP_AJ_T0067815.1 MGP_AJ_G0028729.1 mouse_genomes_project 4 122713400 122715329 + MGP_AJ_P0067815 Lsm10 protein_coding protein_coding MGP_AJ_T0067816.1 MGP_AJ_G0028729.1 mouse_genomes_project 4 122713407 122714880 + MGP_AJ_P0067816 Lsm10 protein_coding protein_coding MGP_AJ_T0068062.1 MGP_AJ_G0028783.1 mouse_genomes_project 4 126167627 126169636 - MGP_AJ_P0068062 Tssk3 protein_coding protein_coding MGP_AJ_T0066627.1 MGP_AJ_G0028466.1 mouse_genomes_project 4 99818898 99823239 - MGP_AJ_P0066627 Insl5 protein_coding protein_coding MGP_AJ_T0066628.1 MGP_AJ_G0028466.1 mouse_genomes_project 4 99819140 99823344 - MGP_AJ_P0066628 Insl5 protein_coding protein_coding MGP_AJ_T0068137.1 MGP_AJ_G0028796.1 mouse_genomes_project 4 126356840 126378006 - MGP_AJ_P0068137 Tmem39b protein_coding nonsense_mediated_decay MGP_AJ_T0068138.1 MGP_AJ_G0028796.1 mouse_genomes_project 4 126356840 126378048 - MGP_AJ_P0068138 Tmem39b protein_coding protein_coding MGP_AJ_T0068139.1 MGP_AJ_G0028796.1 mouse_genomes_project 4 126357084 126359434 - Tmem39b protein_coding retained_intron MGP_AJ_T0068140.1 MGP_AJ_G0028796.1 mouse_genomes_project 4 126373272 126377830 - MGP_AJ_P0068140 Tmem39b protein_coding protein_coding MGP_AJ_T0068141.1 MGP_AJ_G0028796.1 mouse_genomes_project 4 126373348 126377954 - MGP_AJ_P0068141 Tmem39b protein_coding nonsense_mediated_decay MGP_AJ_T0014760.1 MGP_AJ_G0012855.1 mouse_genomes_project 4 120421635 120423034 + processed_pseudogene processed_pseudogene MGP_AJ_T0101270.1 MGP_AJ_G0039236.1 mouse_genomes_project 4 151738037 151738181 + Gm26036 snoRNA snoRNA MGP_AJ_T0101255.1 MGP_AJ_G0039221.1 mouse_genomes_project 4 127301236 127301319 + Gm24091 snoRNA snoRNA MGP_AJ_T0010607.1 MGP_AJ_G0008729.1 mouse_genomes_project 4 105828963 105829039 + Mir761 miRNA miRNA MGP_AJ_T0064872.1 MGP_AJ_G0028051.1 mouse_genomes_project 4 18310814 18339491 + MGP_AJ_P0064872 Pnisr protein_coding protein_coding MGP_AJ_T0064873.1 MGP_AJ_G0028051.1 mouse_genomes_project 4 18311279 18336771 + MGP_AJ_P0064873 Pnisr protein_coding nonsense_mediated_decay MGP_AJ_T0064874.1 MGP_AJ_G0028051.1 mouse_genomes_project 4 18311286 18339483 + MGP_AJ_P0064874 Pnisr protein_coding protein_coding MGP_AJ_T0064875.1 MGP_AJ_G0028051.1 mouse_genomes_project 4 18311289 18323700 + Pnisr protein_coding processed_transcript MGP_AJ_T0064876.1 MGP_AJ_G0028051.1 mouse_genomes_project 4 18311289 18334358 + MGP_AJ_P0064876 Pnisr protein_coding protein_coding MGP_AJ_T0064877.1 MGP_AJ_G0028051.1 mouse_genomes_project 4 18311295 18321222 + Pnisr protein_coding processed_transcript MGP_AJ_T0064878.1 MGP_AJ_G0028051.1 mouse_genomes_project 4 18311304 18318156 + Pnisr protein_coding processed_transcript MGP_AJ_T0064879.1 MGP_AJ_G0028051.1 mouse_genomes_project 4 18311312 18325355 + Pnisr protein_coding processed_transcript MGP_AJ_T0064880.1 MGP_AJ_G0028051.1 mouse_genomes_project 4 18317299 18322434 + Pnisr protein_coding processed_transcript MGP_AJ_T0064881.1 MGP_AJ_G0028051.1 mouse_genomes_project 4 18321957 18325275 + Pnisr protein_coding processed_transcript MGP_AJ_T0064882.1 MGP_AJ_G0028051.1 mouse_genomes_project 4 18322230 18324118 + Pnisr protein_coding processed_transcript MGP_AJ_T0064883.1 MGP_AJ_G0028051.1 mouse_genomes_project 4 18334049 18336880 + Pnisr protein_coding processed_transcript MGP_AJ_T0064884.1 MGP_AJ_G0028051.1 mouse_genomes_project 4 18337219 18338272 + Pnisr protein_coding processed_transcript MGP_AJ_T0067276.1 MGP_AJ_G0028596.1 mouse_genomes_project 4 113195014 113208043 - MGP_AJ_P0067276 Toe1 protein_coding protein_coding MGP_AJ_T0067277.1 MGP_AJ_G0028596.1 mouse_genomes_project 4 113204496 113208135 - MGP_AJ_P0067277 Toe1 protein_coding protein_coding MGP_AJ_T0067278.1 MGP_AJ_G0028596.1 mouse_genomes_project 4 113204506 113205687 - Toe1 protein_coding processed_transcript MGP_AJ_T0067279.1 MGP_AJ_G0028596.1 mouse_genomes_project 4 113205168 113206100 - Toe1 protein_coding retained_intron MGP_AJ_T0067280.1 MGP_AJ_G0028596.1 mouse_genomes_project 4 113205276 113207018 - MGP_AJ_P0067280 Toe1 protein_coding nonsense_mediated_decay MGP_AJ_T0067281.1 MGP_AJ_G0028596.1 mouse_genomes_project 4 113205770 113207095 - Toe1 protein_coding retained_intron MGP_AJ_T0067282.1 MGP_AJ_G0028596.1 mouse_genomes_project 4 113206205 113208101 - Toe1 protein_coding processed_transcript MGP_AJ_T0067283.1 MGP_AJ_G0028596.1 mouse_genomes_project 4 113206311 113208043 - Toe1 protein_coding retained_intron MGP_AJ_T0101203.1 MGP_AJ_G0039169.1 mouse_genomes_project 4 39771866 39771996 - Gm23709 snoRNA snoRNA MGP_AJ_T0004492.1 MGP_AJ_G0003905.1 mouse_genomes_project 4 99804597 99812447 - BB031773 antisense antisense MGP_AJ_T0067933.1 MGP_AJ_G0028752.1 mouse_genomes_project 4 123777456 123783376 + MGP_AJ_P0067933 Tmem35b protein_coding protein_coding MGP_AJ_T0067934.1 MGP_AJ_G0028752.1 mouse_genomes_project 4 123779794 123783376 + MGP_AJ_P0067934 Tmem35b protein_coding protein_coding MGP_AJ_T0065752.1 MGP_AJ_G0028241.1 mouse_genomes_project 4 46193950 46209519 - MGP_AJ_P0065752 Baat protein_coding protein_coding MGP_AJ_T0065753.1 MGP_AJ_G0028241.1 mouse_genomes_project 4 46194348 46206174 - MGP_AJ_P0065753 Baat protein_coding protein_coding MGP_AJ_T0068836.1 MGP_AJ_G0028948.1 mouse_genomes_project 4 134690803 134814977 + MGP_AJ_P0068836 Eif4g3 protein_coding protein_coding MGP_AJ_T0068837.1 MGP_AJ_G0028948.1 mouse_genomes_project 4 134690803 134825849 + MGP_AJ_P0068837 Eif4g3 protein_coding protein_coding MGP_AJ_T0068838.1 MGP_AJ_G0028948.1 mouse_genomes_project 4 134690803 134804157 + MGP_AJ_P0068838 Eif4g3 protein_coding protein_coding MGP_AJ_T0068839.1 MGP_AJ_G0028948.1 mouse_genomes_project 4 134691237 134905667 + MGP_AJ_P0068839 Eif4g3 protein_coding protein_coding MGP_AJ_T0068840.1 MGP_AJ_G0028948.1 mouse_genomes_project 4 134691237 134905667 + MGP_AJ_P0068840 Eif4g3 protein_coding protein_coding MGP_AJ_T0068841.1 MGP_AJ_G0028948.1 mouse_genomes_project 4 134691257 134691959 + Eif4g3 protein_coding processed_transcript MGP_AJ_T0068842.1 MGP_AJ_G0028948.1 mouse_genomes_project 4 134691265 134758079 + Eif4g3 protein_coding processed_transcript MGP_AJ_T0068843.1 MGP_AJ_G0028948.1 mouse_genomes_project 4 134691294 134904757 + MGP_AJ_P0068843 Eif4g3 protein_coding protein_coding MGP_AJ_T0068844.1 MGP_AJ_G0028948.1 mouse_genomes_project 4 134691744 134905650 + MGP_AJ_P0068844 Eif4g3 protein_coding protein_coding MGP_AJ_T0068845.1 MGP_AJ_G0028948.1 mouse_genomes_project 4 134702698 134802126 + MGP_AJ_P0068845 Eif4g3 protein_coding protein_coding MGP_AJ_T0068846.1 MGP_AJ_G0028948.1 mouse_genomes_project 4 134849608 134907078 + MGP_AJ_P0068846 Eif4g3 protein_coding protein_coding MGP_AJ_T0068847.1 MGP_AJ_G0028948.1 mouse_genomes_project 4 134876490 134907078 + Eif4g3 protein_coding processed_transcript MGP_AJ_T0068848.1 MGP_AJ_G0028948.1 mouse_genomes_project 4 134879144 134887251 + Eif4g3 protein_coding retained_intron MGP_AJ_T0068849.1 MGP_AJ_G0028948.1 mouse_genomes_project 4 134883098 134887029 + Eif4g3 protein_coding processed_transcript MGP_AJ_T0068850.1 MGP_AJ_G0028948.1 mouse_genomes_project 4 134900327 134902058 + Eif4g3 protein_coding processed_transcript MGP_AJ_T0068110.1 MGP_AJ_G0028792.1 mouse_genomes_project 4 126292352 126296317 - MGP_AJ_P0068110 protein_coding protein_coding MGP_AJ_T0068111.1 MGP_AJ_G0028792.1 mouse_genomes_project 4 126292986 126294248 - protein_coding processed_transcript MGP_AJ_T0068112.1 MGP_AJ_G0028792.1 mouse_genomes_project 4 126294556 126296294 - protein_coding retained_intron MGP_AJ_T0068113.1 MGP_AJ_G0028792.1 mouse_genomes_project 4 126295315 126296314 - MGP_AJ_P0068113 protein_coding protein_coding MGP_AJ_T0068114.1 MGP_AJ_G0028792.1 mouse_genomes_project 4 126295459 126296298 - protein_coding processed_transcript MGP_AJ_T0066139.1 MGP_AJ_G0028352.1 mouse_genomes_project 4 72705181 73221085 - MGP_AJ_P0066139 Ptprd protein_coding protein_coding MGP_AJ_T0066140.1 MGP_AJ_G0028352.1 mouse_genomes_project 4 72705182 72899126 - MGP_AJ_P0066140 Ptprd protein_coding protein_coding MGP_AJ_T0066141.1 MGP_AJ_G0028352.1 mouse_genomes_project 4 72709115 73365441 - MGP_AJ_P0066141 Ptprd protein_coding protein_coding MGP_AJ_T0066142.1 MGP_AJ_G0028352.1 mouse_genomes_project 4 72709267 73093426 - MGP_AJ_P0066142 Ptprd protein_coding protein_coding MGP_AJ_T0066143.1 MGP_AJ_G0028352.1 mouse_genomes_project 4 72709267 73093426 - MGP_AJ_P0066143 Ptprd protein_coding protein_coding MGP_AJ_T0066144.1 MGP_AJ_G0028352.1 mouse_genomes_project 4 72709267 73093426 - MGP_AJ_P0066144 Ptprd protein_coding protein_coding MGP_AJ_T0066145.1 MGP_AJ_G0028352.1 mouse_genomes_project 4 72709267 73111927 - MGP_AJ_P0066145 Ptprd protein_coding protein_coding MGP_AJ_T0066146.1 MGP_AJ_G0028352.1 mouse_genomes_project 4 72709267 73093426 - MGP_AJ_P0066146 Ptprd protein_coding protein_coding MGP_AJ_T0066147.1 MGP_AJ_G0028352.1 mouse_genomes_project 4 72709267 73093405 - MGP_AJ_P0066147 Ptprd protein_coding protein_coding MGP_AJ_T0066148.1 MGP_AJ_G0028352.1 mouse_genomes_project 4 72848233 72867343 - Ptprd protein_coding retained_intron MGP_AJ_T0066149.1 MGP_AJ_G0028352.1 mouse_genomes_project 4 72850360 72852506 - MGP_AJ_P0066149 Ptprd protein_coding protein_coding MGP_AJ_T0066150.1 MGP_AJ_G0028352.1 mouse_genomes_project 4 72865321 72873118 - MGP_AJ_P0066150 Ptprd protein_coding nonsense_mediated_decay MGP_AJ_T0066151.1 MGP_AJ_G0028352.1 mouse_genomes_project 4 72898404 72899385 - MGP_AJ_P0066151 Ptprd protein_coding protein_coding MGP_AJ_T0066152.1 MGP_AJ_G0028352.1 mouse_genomes_project 4 72904618 74984689 - Ptprd protein_coding processed_transcript MGP_AJ_T0066153.1 MGP_AJ_G0028352.1 mouse_genomes_project 4 72905594 73093450 - Ptprd protein_coding processed_transcript MGP_AJ_T0066154.1 MGP_AJ_G0028352.1 mouse_genomes_project 4 73362446 74984661 - Ptprd protein_coding processed_transcript MGP_AJ_T0066155.1 MGP_AJ_G0028352.1 mouse_genomes_project 4 73364681 74984533 - Ptprd protein_coding processed_transcript MGP_AJ_T0066156.1 MGP_AJ_G0028352.1 mouse_genomes_project 4 73979822 74984533 - Ptprd protein_coding retained_intron MGP_AJ_T0066157.1 MGP_AJ_G0028352.1 mouse_genomes_project 4 74140292 74984755 - Ptprd protein_coding processed_transcript MGP_AJ_T0066158.1 MGP_AJ_G0028352.1 mouse_genomes_project 4 74700367 74984646 - Ptprd protein_coding processed_transcript MGP_AJ_T0066159.1 MGP_AJ_G0028352.1 mouse_genomes_project 4 74708440 74984637 - Ptprd protein_coding retained_intron MGP_AJ_T0067879.1 MGP_AJ_G0028742.1 mouse_genomes_project 4 123200348 123238965 + MGP_AJ_P0067879 Clspn protein_coding protein_coding MGP_AJ_T0067880.1 MGP_AJ_G0028742.1 mouse_genomes_project 4 123200408 123203680 + MGP_AJ_P0067880 Clspn protein_coding protein_coding MGP_AJ_T0067881.1 MGP_AJ_G0028742.1 mouse_genomes_project 4 123200418 123207221 + Clspn protein_coding processed_transcript MGP_AJ_T0067882.1 MGP_AJ_G0028742.1 mouse_genomes_project 4 123203671 123209657 + MGP_AJ_P0067882 Clspn protein_coding protein_coding MGP_AJ_T0067883.1 MGP_AJ_G0028742.1 mouse_genomes_project 4 123209941 123221219 + MGP_AJ_P0067883 Clspn protein_coding protein_coding MGP_AJ_T0067884.1 MGP_AJ_G0028742.1 mouse_genomes_project 4 123215888 123218719 + Clspn protein_coding processed_transcript MGP_AJ_T0067885.1 MGP_AJ_G0028742.1 mouse_genomes_project 4 123224787 123236373 + Clspn protein_coding processed_transcript MGP_AJ_T0068712.1 MGP_AJ_G0028918.1 mouse_genomes_project 4 132648588 132649122 - Rpl11 protein_coding processed_transcript MGP_AJ_T0068713.1 MGP_AJ_G0028918.1 mouse_genomes_project 4 132648588 132672574 - Rpl11 protein_coding processed_transcript MGP_AJ_T0068714.1 MGP_AJ_G0028918.1 mouse_genomes_project 4 132669620 132673282 - MGP_AJ_P0068714 Rpl11 protein_coding protein_coding MGP_AJ_T0068715.1 MGP_AJ_G0028918.1 mouse_genomes_project 4 132669836 132670416 - Rpl11 protein_coding processed_transcript MGP_AJ_T0068716.1 MGP_AJ_G0028918.1 mouse_genomes_project 4 132669879 132672885 - Rpl11 protein_coding processed_transcript MGP_AJ_T0068717.1 MGP_AJ_G0028918.1 mouse_genomes_project 4 132670169 132672979 - MGP_AJ_P0068717 Rpl11 protein_coding protein_coding MGP_AJ_T0068718.1 MGP_AJ_G0028918.1 mouse_genomes_project 4 132670221 132672643 - Rpl11 protein_coding processed_transcript MGP_AJ_T0068719.1 MGP_AJ_G0028918.1 mouse_genomes_project 4 132670522 132672595 - Rpl11 protein_coding processed_transcript MGP_AJ_T0068720.1 MGP_AJ_G0028918.1 mouse_genomes_project 4 132670917 132672605 - Rpl11 protein_coding processed_transcript MGP_AJ_T0068721.1 MGP_AJ_G0028918.1 mouse_genomes_project 4 132671130 132673317 - Rpl11 protein_coding processed_transcript MGP_AJ_T0010654.1 MGP_AJ_G0008776.1 mouse_genomes_project 4 153667085 153667155 - Mir200b miRNA miRNA MGP_AJ_T0098800.1 MGP_AJ_G0036784.1 mouse_genomes_project 4 40134680 40134951 - Rmrp ribozyme ribozyme MGP_AJ_T0067444.1 MGP_AJ_G0028626.1 mouse_genomes_project 4 114784241 114831626 - MGP_AJ_P0067444 Szt2 protein_coding protein_coding MGP_AJ_T0067445.1 MGP_AJ_G0028626.1 mouse_genomes_project 4 114784245 114795737 - MGP_AJ_P0067445 Szt2 protein_coding nonsense_mediated_decay MGP_AJ_T0067446.1 MGP_AJ_G0028626.1 mouse_genomes_project 4 114784277 114831542 - MGP_AJ_P0067446 Szt2 protein_coding unknown_likely_coding MGP_AJ_T0067447.1 MGP_AJ_G0028626.1 mouse_genomes_project 4 114784905 114786561 - Szt2 protein_coding processed_transcript MGP_AJ_T0067448.1 MGP_AJ_G0028626.1 mouse_genomes_project 4 114790341 114791228 - Szt2 protein_coding retained_intron MGP_AJ_T0067449.1 MGP_AJ_G0028626.1 mouse_genomes_project 4 114794135 114795288 - Szt2 protein_coding retained_intron MGP_AJ_T0067450.1 MGP_AJ_G0028626.1 mouse_genomes_project 4 114812063 114812867 - Szt2 protein_coding processed_transcript MGP_AJ_T0014818.1 MGP_AJ_G0012913.1 mouse_genomes_project 4 140618896 140619152 - processed_pseudogene processed_pseudogene MGP_AJ_T0069599.1 MGP_AJ_G0029140.1 mouse_genomes_project 4 149728494 149829959 + MGP_AJ_P0069599 Acot7 protein_coding protein_coding MGP_AJ_T0069600.1 MGP_AJ_G0029140.1 mouse_genomes_project 4 149736125 149774890 + Acot7 protein_coding processed_transcript MGP_AJ_T0069601.1 MGP_AJ_G0029140.1 mouse_genomes_project 4 149736494 149829962 + MGP_AJ_P0069601 Acot7 protein_coding protein_coding MGP_AJ_T0069602.1 MGP_AJ_G0029140.1 mouse_genomes_project 4 149736566 149829954 + MGP_AJ_P0069602 Acot7 protein_coding protein_coding MGP_AJ_T0069603.1 MGP_AJ_G0029140.1 mouse_genomes_project 4 149755672 149829954 + MGP_AJ_P0069603 Acot7 protein_coding protein_coding MGP_AJ_T0069604.1 MGP_AJ_G0029140.1 mouse_genomes_project 4 149755730 149774970 + Acot7 protein_coding processed_transcript MGP_AJ_T0101234.1 MGP_AJ_G0039200.1 mouse_genomes_project 4 90339537 90339665 - Gm23443 snoRNA snoRNA MGP_AJ_T0014540.1 MGP_AJ_G0012635.1 mouse_genomes_project 4 46449700 46450216 - processed_pseudogene processed_pseudogene MGP_AJ_T0069305.1 MGP_AJ_G0029088.1 mouse_genomes_project 4 145865540 145875896 - MGP_AJ_P0069305 Ubiad1 protein_coding protein_coding MGP_AJ_T0069306.1 MGP_AJ_G0029088.1 mouse_genomes_project 4 145867535 145875886 - Ubiad1 protein_coding processed_transcript MGP_AJ_T0068908.1 MGP_AJ_G0028965.1 mouse_genomes_project 4 135589427 135594303 + MGP_AJ_P0068908 Pla2g2e protein_coding protein_coding MGP_AJ_T0068909.1 MGP_AJ_G0028965.1 mouse_genomes_project 4 135589456 135594008 + MGP_AJ_P0068909 Pla2g2e protein_coding protein_coding MGP_AJ_T0068910.1 MGP_AJ_G0028965.1 mouse_genomes_project 4 135590845 135594303 + MGP_AJ_P0068910 Pla2g2e protein_coding protein_coding MGP_AJ_T0065968.1 MGP_AJ_G0028303.1 mouse_genomes_project 4 56661330 56663993 + MGP_AJ_P0065968 Mup6 protein_coding unknown_likely_coding MGP_AJ_T0065969.1 MGP_AJ_G0028303.1 mouse_genomes_project 4 56661332 56663871 + MGP_AJ_P0065969 Mup6 protein_coding protein_coding MGP_AJ_T0014660.1 MGP_AJ_G0012755.1 mouse_genomes_project 4 91240182 91240759 + processed_pseudogene processed_pseudogene MGP_AJ_T0014684.1 MGP_AJ_G0012779.1 mouse_genomes_project 4 98642542 98643559 - processed_pseudogene processed_pseudogene MGP_AJ_T0065934.1 MGP_AJ_G0028294.1 mouse_genomes_project 4 55692365 55761318 - MGP_AJ_P0065934 AI481877 protein_coding protein_coding MGP_AJ_T0065935.1 MGP_AJ_G0028294.1 mouse_genomes_project 4 55729304 55758456 - AI481877 protein_coding retained_intron MGP_AJ_T0004564.1 MGP_AJ_G0003961.1 mouse_genomes_project 4 135098057 135100624 + AB041806 antisense antisense MGP_AJ_T0064908.1 MGP_AJ_G0028057.1 mouse_genomes_project 4 21075003 21267278 - MGP_AJ_P0064908 Klhl32 protein_coding protein_coding MGP_AJ_T0064909.1 MGP_AJ_G0028057.1 mouse_genomes_project 4 21075003 21321433 - MGP_AJ_P0064909 Klhl32 protein_coding protein_coding MGP_AJ_T0064910.1 MGP_AJ_G0028057.1 mouse_genomes_project 4 21078379 21209306 - MGP_AJ_P0064910 Klhl32 protein_coding nonsense_mediated_decay MGP_AJ_T0064911.1 MGP_AJ_G0028057.1 mouse_genomes_project 4 21078468 21321240 - MGP_AJ_P0064911 Klhl32 protein_coding nonsense_mediated_decay MGP_AJ_T0064912.1 MGP_AJ_G0028057.1 mouse_genomes_project 4 21079686 21321395 - MGP_AJ_P0064912 Klhl32 protein_coding protein_coding MGP_AJ_T0064913.1 MGP_AJ_G0028057.1 mouse_genomes_project 4 21111623 21321240 - Klhl32 protein_coding retained_intron MGP_AJ_T0064914.1 MGP_AJ_G0028057.1 mouse_genomes_project 4 21112165 21135919 - Klhl32 protein_coding processed_transcript MGP_AJ_T0014761.1 MGP_AJ_G0012856.1 mouse_genomes_project 4 120469161 120469700 + processed_pseudogene processed_pseudogene MGP_AJ_T0004433.1 MGP_AJ_G0003861.1 mouse_genomes_project 4 25284693 25285473 - Gm11915 antisense antisense MGP_AJ_T0069371.1 MGP_AJ_G0029099.1 mouse_genomes_project 4 146565915 146567649 - MGP_AJ_P0069371 Cort protein_coding protein_coding MGP_AJ_T0099964.1 MGP_AJ_G0037930.1 mouse_genomes_project 4 128999615 128999709 + Gm23055 snRNA snRNA MGP_AJ_T0101211.1 MGP_AJ_G0039177.1 mouse_genomes_project 4 50637620 50637751 + Gm24177 snoRNA snoRNA MGP_AJ_T0066075.1 MGP_AJ_G0028331.1 mouse_genomes_project 4 60336281 60361855 + MGP_AJ_P0066075 Tmem268 protein_coding protein_coding MGP_AJ_T0066076.1 MGP_AJ_G0028331.1 mouse_genomes_project 4 60336356 60339992 + Tmem268 protein_coding processed_transcript MGP_AJ_T0066077.1 MGP_AJ_G0028331.1 mouse_genomes_project 4 60337727 60348077 + MGP_AJ_P0066077 Tmem268 protein_coding protein_coding MGP_AJ_T0066078.1 MGP_AJ_G0028331.1 mouse_genomes_project 4 60337727 60348108 + MGP_AJ_P0066078 Tmem268 protein_coding protein_coding MGP_AJ_T0066079.1 MGP_AJ_G0028331.1 mouse_genomes_project 4 60337860 60361851 + MGP_AJ_P0066079 Tmem268 protein_coding protein_coding MGP_AJ_T0004526.1 MGP_AJ_G0003932.1 mouse_genomes_project 4 119639011 119639994 - antisense antisense MGP_AJ_T0010628.1 MGP_AJ_G0008750.1 mouse_genomes_project 4 130300297 130300356 - Mir7227 miRNA miRNA MGP_AJ_T0065788.1 MGP_AJ_G0028253.1 mouse_genomes_project 4 49458833 49459793 + MGP_AJ_P0065788 Olfr275 protein_coding protein_coding MGP_AJ_T0007799.1 MGP_AJ_G0006372.1 mouse_genomes_project 4 2176165 2186422 + 4930423M02Rik lincRNA lincRNA MGP_AJ_T0007800.1 MGP_AJ_G0006372.1 mouse_genomes_project 4 2176173 2185894 + 4930423M02Rik lincRNA lincRNA MGP_AJ_T0070016.1 MGP_AJ_G0029215.1 mouse_genomes_project 4 153821856 153827408 + MGP_AJ_P0070016 Perm1 protein_coding protein_coding MGP_AJ_T0007939.1 MGP_AJ_G0006487.1 mouse_genomes_project 4 113917088 113921250 + Gm12827 lincRNA lincRNA MGP_AJ_T0068081.1 MGP_AJ_G0028789.1 mouse_genomes_project 4 126269592 126278259 - MGP_AJ_P0068081 Eif3i protein_coding protein_coding MGP_AJ_T0068082.1 MGP_AJ_G0028789.1 mouse_genomes_project 4 126270963 126273386 - Eif3i protein_coding retained_intron MGP_AJ_T0068083.1 MGP_AJ_G0028789.1 mouse_genomes_project 4 126271160 126278210 - MGP_AJ_P0068083 Eif3i protein_coding protein_coding MGP_AJ_T0068084.1 MGP_AJ_G0028789.1 mouse_genomes_project 4 126272744 126278210 - Eif3i protein_coding processed_transcript MGP_AJ_T0068085.1 MGP_AJ_G0028789.1 mouse_genomes_project 4 126275807 126278227 - Eif3i protein_coding retained_intron MGP_AJ_T0068566.1 MGP_AJ_G0028885.1 mouse_genomes_project 4 130993478 131014922 + Pafah2 protein_coding processed_transcript MGP_AJ_T0068567.1 MGP_AJ_G0028885.1 mouse_genomes_project 4 130993515 131008707 + Pafah2 protein_coding processed_transcript MGP_AJ_T0068568.1 MGP_AJ_G0028885.1 mouse_genomes_project 4 130994390 131007904 + Pafah2 protein_coding processed_transcript MGP_AJ_T0068569.1 MGP_AJ_G0028885.1 mouse_genomes_project 4 130994624 131024213 + MGP_AJ_P0068569 Pafah2 protein_coding protein_coding MGP_AJ_T0068570.1 MGP_AJ_G0028885.1 mouse_genomes_project 4 130999785 131001939 + MGP_AJ_P0068570 Pafah2 protein_coding protein_coding MGP_AJ_T0068571.1 MGP_AJ_G0028885.1 mouse_genomes_project 4 130999843 131019367 + Pafah2 protein_coding processed_transcript MGP_AJ_T0007824.1 MGP_AJ_G0006391.1 mouse_genomes_project 4 20908135 20908644 - Gm27243 lincRNA lincRNA MGP_AJ_T0004494.1 MGP_AJ_G0003907.1 mouse_genomes_project 4 103391109 103393859 - Gm12744 antisense antisense MGP_AJ_T0007998.1 MGP_AJ_G0006524.1 mouse_genomes_project 4 129659105 129662287 + Gm26615 lincRNA lincRNA MGP_AJ_T0007861.1 MGP_AJ_G0006423.1 mouse_genomes_project 4 52239657 52273505 + Gm12506 lincRNA lincRNA MGP_AJ_T0018044.1 MGP_AJ_G0015520.1 mouse_genomes_project 4 40739917 40757751 + Gm12503 processed_transcript processed_transcript MGP_AJ_T0067346.1 MGP_AJ_G0028609.1 mouse_genomes_project 4 113620576 113657842 - MGP_AJ_P0067346 Gm1661 protein_coding protein_coding MGP_AJ_T0067347.1 MGP_AJ_G0028609.1 mouse_genomes_project 4 113622434 113657842 - MGP_AJ_P0067347 Gm1661 protein_coding protein_coding MGP_AJ_T0067348.1 MGP_AJ_G0028609.1 mouse_genomes_project 4 113649715 113658050 - Gm1661 protein_coding processed_transcript MGP_AJ_T0068214.1 MGP_AJ_G0028811.1 mouse_genomes_project 4 127098550 127140801 + MGP_AJ_P0068214 Nkain1 protein_coding protein_coding MGP_AJ_T0068215.1 MGP_AJ_G0028811.1 mouse_genomes_project 4 127098757 127140817 + MGP_AJ_P0068215 Nkain1 protein_coding nonsense_mediated_decay MGP_AJ_T0068216.1 MGP_AJ_G0028811.1 mouse_genomes_project 4 127114440 127133358 + Nkain1 protein_coding processed_transcript MGP_AJ_T0066480.1 MGP_AJ_G0028435.1 mouse_genomes_project 4 95127673 95137592 + Inadl protein_coding processed_transcript MGP_AJ_T0066481.1 MGP_AJ_G0028435.1 mouse_genomes_project 4 95127679 95456190 + MGP_AJ_P0066481 Inadl protein_coding protein_coding MGP_AJ_T0066482.1 MGP_AJ_G0028435.1 mouse_genomes_project 4 95127743 95286416 + MGP_AJ_P0066482 Inadl protein_coding protein_coding MGP_AJ_T0066483.1 MGP_AJ_G0028435.1 mouse_genomes_project 4 95127743 95409962 + MGP_AJ_P0066483 Inadl protein_coding protein_coding MGP_AJ_T0066484.1 MGP_AJ_G0028435.1 mouse_genomes_project 4 95127780 95187972 + MGP_AJ_P0066484 Inadl protein_coding protein_coding MGP_AJ_T0066485.1 MGP_AJ_G0028435.1 mouse_genomes_project 4 95148674 95163946 + Inadl protein_coding processed_transcript MGP_AJ_T0066486.1 MGP_AJ_G0028435.1 mouse_genomes_project 4 95169089 95174022 + Inadl protein_coding processed_transcript MGP_AJ_T0066487.1 MGP_AJ_G0028435.1 mouse_genomes_project 4 95173960 95232208 + MGP_AJ_P0066487 Inadl protein_coding protein_coding MGP_AJ_T0066488.1 MGP_AJ_G0028435.1 mouse_genomes_project 4 95183779 95454945 + MGP_AJ_P0066488 Inadl protein_coding protein_coding MGP_AJ_T0066489.1 MGP_AJ_G0028435.1 mouse_genomes_project 4 95229629 95242827 + Inadl protein_coding processed_transcript MGP_AJ_T0066490.1 MGP_AJ_G0028435.1 mouse_genomes_project 4 95253782 95270918 + MGP_AJ_P0066490 Inadl protein_coding protein_coding MGP_AJ_T0066491.1 MGP_AJ_G0028435.1 mouse_genomes_project 4 95278497 95456190 + MGP_AJ_P0066491 Inadl protein_coding protein_coding MGP_AJ_T0066492.1 MGP_AJ_G0028435.1 mouse_genomes_project 4 95278736 95424814 + MGP_AJ_P0066492 Inadl protein_coding protein_coding MGP_AJ_T0007812.1 MGP_AJ_G0006380.1 mouse_genomes_project 4 8842214 8891444 + Gm11846 lincRNA lincRNA MGP_AJ_T0067877.1 MGP_AJ_G0028741.1 mouse_genomes_project 4 123132872 123176871 - MGP_AJ_P0067877 Ago4 protein_coding protein_coding MGP_AJ_T0067878.1 MGP_AJ_G0028741.1 mouse_genomes_project 4 123158502 123159931 - Ago4 protein_coding processed_transcript MGP_AJ_T0067120.1 MGP_AJ_G0028566.1 mouse_genomes_project 4 112027650 112049213 - MGP_AJ_P0067120 protein_coding protein_coding MGP_AJ_T0067121.1 MGP_AJ_G0028566.1 mouse_genomes_project 4 112027650 112042353 - MGP_AJ_P0067121 protein_coding nonsense_mediated_decay MGP_AJ_T0067122.1 MGP_AJ_G0028566.1 mouse_genomes_project 4 112028563 112043513 - MGP_AJ_P0067122 protein_coding protein_coding MGP_AJ_T0067123.1 MGP_AJ_G0028566.1 mouse_genomes_project 4 112031435 112037850 - protein_coding retained_intron MGP_AJ_T0067892.1 MGP_AJ_G0028746.1 mouse_genomes_project 4 123392425 123402625 - MGP_AJ_P0067892 Ncdn protein_coding protein_coding MGP_AJ_T0067893.1 MGP_AJ_G0028746.1 mouse_genomes_project 4 123393406 123402654 - Ncdn protein_coding processed_transcript MGP_AJ_T0067894.1 MGP_AJ_G0028746.1 mouse_genomes_project 4 123393406 123402643 - MGP_AJ_P0067894 Ncdn protein_coding protein_coding MGP_AJ_T0068355.1 MGP_AJ_G0028836.1 mouse_genomes_project 4 129289902 129297802 - MGP_AJ_P0068355 Xkr8 protein_coding protein_coding MGP_AJ_T0068356.1 MGP_AJ_G0028836.1 mouse_genomes_project 4 129293762 129297784 - Xkr8 protein_coding processed_transcript MGP_AJ_T0068357.1 MGP_AJ_G0028836.1 mouse_genomes_project 4 129296159 129297739 - Xkr8 protein_coding processed_transcript MGP_AJ_T0007901.1 MGP_AJ_G0006458.1 mouse_genomes_project 4 90840672 91167897 - lincRNA lincRNA MGP_AJ_T0014816.1 MGP_AJ_G0012911.1 mouse_genomes_project 4 140544804 140545222 - processed_pseudogene processed_pseudogene MGP_AJ_T0067748.1 MGP_AJ_G0028712.1 mouse_genomes_project 4 121338271 121397252 + MGP_AJ_P0067748 Inpp5b protein_coding protein_coding MGP_AJ_T0067749.1 MGP_AJ_G0028712.1 mouse_genomes_project 4 121338279 121347882 + MGP_AJ_P0067749 Inpp5b protein_coding protein_coding MGP_AJ_T0067750.1 MGP_AJ_G0028712.1 mouse_genomes_project 4 121338293 121397246 + MGP_AJ_P0067750 Inpp5b protein_coding nonsense_mediated_decay MGP_AJ_T0067751.1 MGP_AJ_G0028712.1 mouse_genomes_project 4 121338299 121347844 + MGP_AJ_P0067751 Inpp5b protein_coding protein_coding MGP_AJ_T0067752.1 MGP_AJ_G0028712.1 mouse_genomes_project 4 121365158 121378255 + Inpp5b protein_coding processed_transcript MGP_AJ_T0067753.1 MGP_AJ_G0028712.1 mouse_genomes_project 4 121365264 121378308 + Inpp5b protein_coding processed_transcript MGP_AJ_T0067754.1 MGP_AJ_G0028712.1 mouse_genomes_project 4 121391024 121393634 + Inpp5b protein_coding processed_transcript MGP_AJ_T0067755.1 MGP_AJ_G0028712.1 mouse_genomes_project 4 121395288 121396851 + Inpp5b protein_coding processed_transcript MGP_AJ_T0014463.1 MGP_AJ_G0012558.1 mouse_genomes_project 4 22301678 22302145 - processed_pseudogene processed_pseudogene MGP_AJ_T0099955.1 MGP_AJ_G0037921.1 mouse_genomes_project 4 117554894 117555058 - Gm23540 snRNA snRNA MGP_AJ_T0014550.1 MGP_AJ_G0012645.1 mouse_genomes_project 4 49454924 49455554 + processed_pseudogene processed_pseudogene MGP_AJ_T0068198.1 MGP_AJ_G0028806.1 mouse_genomes_project 4 126945862 126967922 - MGP_AJ_P0068198 Serinc2 protein_coding protein_coding MGP_AJ_T0068199.1 MGP_AJ_G0028806.1 mouse_genomes_project 4 126945862 126967554 - MGP_AJ_P0068199 Serinc2 protein_coding protein_coding MGP_AJ_T0068200.1 MGP_AJ_G0028806.1 mouse_genomes_project 4 126946266 126971410 - MGP_AJ_P0068200 Serinc2 protein_coding protein_coding MGP_AJ_T0068201.1 MGP_AJ_G0028806.1 mouse_genomes_project 4 126955361 126967868 - MGP_AJ_P0068201 Serinc2 protein_coding protein_coding MGP_AJ_T0068202.1 MGP_AJ_G0028806.1 mouse_genomes_project 4 126955976 126967881 - MGP_AJ_P0068202 Serinc2 protein_coding protein_coding MGP_AJ_T0069464.1 MGP_AJ_G0029116.1 mouse_genomes_project 4 147630061 147650648 + MGP_AJ_P0069464 Slc2a7 protein_coding protein_coding MGP_AJ_T0069465.1 MGP_AJ_G0029116.1 mouse_genomes_project 4 147638759 147639632 + Slc2a7 protein_coding retained_intron MGP_AJ_T0101259.1 MGP_AJ_G0039225.1 mouse_genomes_project 4 128865361 128865498 + Snora16a snoRNA snoRNA MGP_AJ_T0008040.1 MGP_AJ_G0006562.1 mouse_genomes_project 4 152449224 152450744 + lincRNA lincRNA MGP_AJ_T0004447.1 MGP_AJ_G0003872.1 mouse_genomes_project 4 40399107 40402702 + antisense antisense MGP_AJ_T0067451.1 MGP_AJ_G0028627.1 mouse_genomes_project 4 114831689 114838105 + MGP_AJ_P0067451 Med8 protein_coding protein_coding MGP_AJ_T0067452.1 MGP_AJ_G0028627.1 mouse_genomes_project 4 114831707 114837436 + MGP_AJ_P0067452 Med8 protein_coding protein_coding MGP_AJ_T0067453.1 MGP_AJ_G0028627.1 mouse_genomes_project 4 114831708 114836193 + Med8 protein_coding processed_transcript MGP_AJ_T0067454.1 MGP_AJ_G0028627.1 mouse_genomes_project 4 114831733 114837439 + MGP_AJ_P0067454 Med8 protein_coding protein_coding MGP_AJ_T0067455.1 MGP_AJ_G0028627.1 mouse_genomes_project 4 114832700 114834149 + Med8 protein_coding processed_transcript MGP_AJ_T0067456.1 MGP_AJ_G0028627.1 mouse_genomes_project 4 114833789 114834870 + Med8 protein_coding processed_transcript MGP_AJ_T0067457.1 MGP_AJ_G0028627.1 mouse_genomes_project 4 114833980 114836403 + Med8 protein_coding processed_transcript MGP_AJ_T0014764.1 MGP_AJ_G0012859.1 mouse_genomes_project 4 121620072 121620396 + processed_pseudogene processed_pseudogene MGP_AJ_T0099951.1 MGP_AJ_G0037917.1 mouse_genomes_project 4 113609264 113609380 + Gm23143 snRNA snRNA MGP_AJ_T0011565.1 MGP_AJ_G0009687.1 mouse_genomes_project 4 44269482 44269602 + Gm27668 misc_RNA misc_RNA MGP_AJ_T0099946.1 MGP_AJ_G0037912.1 mouse_genomes_project 4 111188336 111188469 - Gm23230 snRNA snRNA MGP_AJ_T0067770.1 MGP_AJ_G0028716.1 mouse_genomes_project 4 121456600 121463533 - MGP_AJ_P0067770 Maneal protein_coding protein_coding MGP_AJ_T0004613.1 MGP_AJ_G0003999.1 mouse_genomes_project 4 152464454 152473051 - antisense antisense MGP_AJ_T0004614.1 MGP_AJ_G0003999.1 mouse_genomes_project 4 152468247 152475565 - antisense antisense MGP_AJ_T0004510.1 MGP_AJ_G0003917.1 mouse_genomes_project 4 111494595 111498442 + Cyp4x1os antisense antisense MGP_AJ_T0014565.1 MGP_AJ_G0012660.1 mouse_genomes_project 4 52035631 52035983 - processed_pseudogene processed_pseudogene MGP_AJ_T0065925.1 MGP_AJ_G0028289.1 mouse_genomes_project 4 55592815 55607450 + MGP_AJ_P0065925 Zkscan16 protein_coding protein_coding MGP_AJ_T0065497.1 MGP_AJ_G0028188.1 mouse_genomes_project 4 40649160 40678872 + MGP_AJ_P0065497 Clta protein_coding protein_coding MGP_AJ_T0065498.1 MGP_AJ_G0028188.1 mouse_genomes_project 4 40658673 40678872 + MGP_AJ_P0065498 Clta protein_coding protein_coding MGP_AJ_T0065499.1 MGP_AJ_G0028188.1 mouse_genomes_project 4 40658678 40678871 + MGP_AJ_P0065499 Clta protein_coding protein_coding MGP_AJ_T0065500.1 MGP_AJ_G0028188.1 mouse_genomes_project 4 40658713 40678872 + MGP_AJ_P0065500 Clta protein_coding protein_coding MGP_AJ_T0065501.1 MGP_AJ_G0028188.1 mouse_genomes_project 4 40658713 40678872 + MGP_AJ_P0065501 Clta protein_coding protein_coding MGP_AJ_T0065502.1 MGP_AJ_G0028188.1 mouse_genomes_project 4 40658721 40678872 + MGP_AJ_P0065502 Clta protein_coding protein_coding MGP_AJ_T0067649.1 MGP_AJ_G0028682.1 mouse_genomes_project 4 117629974 117670527 - MGP_AJ_P0067649 Rlf protein_coding protein_coding MGP_AJ_T0067650.1 MGP_AJ_G0028682.1 mouse_genomes_project 4 117630485 117697116 - MGP_AJ_P0067650 Rlf protein_coding protein_coding MGP_AJ_T0067651.1 MGP_AJ_G0028682.1 mouse_genomes_project 4 117657942 117670527 - MGP_AJ_P0067651 Rlf protein_coding protein_coding MGP_AJ_T0068907.1 MGP_AJ_G0028964.1 mouse_genomes_project 4 135582074 135585047 - MGP_AJ_P0068907 Gm13030 protein_coding protein_coding MGP_AJ_T0067595.1 MGP_AJ_G0028667.1 mouse_genomes_project 4 116730191 116750468 - MGP_AJ_P0067595 Foxo6 protein_coding protein_coding MGP_AJ_T0014478.1 MGP_AJ_G0012573.1 mouse_genomes_project 4 25591903 25592082 + processed_pseudogene processed_pseudogene MGP_AJ_T0066168.1 MGP_AJ_G0028358.1 mouse_genomes_project 4 78028359 78180955 - MGP_AJ_P0066168 Mpdz protein_coding protein_coding MGP_AJ_T0066169.1 MGP_AJ_G0028358.1 mouse_genomes_project 4 78028364 78085118 - MGP_AJ_P0066169 Mpdz protein_coding protein_coding MGP_AJ_T0066170.1 MGP_AJ_G0028358.1 mouse_genomes_project 4 78028364 78180957 - MGP_AJ_P0066170 Mpdz protein_coding protein_coding MGP_AJ_T0066171.1 MGP_AJ_G0028358.1 mouse_genomes_project 4 78028371 78180872 - MGP_AJ_P0066171 Mpdz protein_coding unknown_likely_coding MGP_AJ_T0066172.1 MGP_AJ_G0028358.1 mouse_genomes_project 4 78029090 78035353 - Mpdz protein_coding retained_intron MGP_AJ_T0066173.1 MGP_AJ_G0028358.1 mouse_genomes_project 4 78029193 78045386 - MGP_AJ_P0066173 Mpdz protein_coding protein_coding MGP_AJ_T0066174.1 MGP_AJ_G0028358.1 mouse_genomes_project 4 78032807 78034515 - Mpdz protein_coding retained_intron MGP_AJ_T0066175.1 MGP_AJ_G0028358.1 mouse_genomes_project 4 78033191 78042414 - MGP_AJ_P0066175 Mpdz protein_coding protein_coding MGP_AJ_T0066176.1 MGP_AJ_G0028358.1 mouse_genomes_project 4 78034392 78037872 - Mpdz protein_coding retained_intron MGP_AJ_T0066177.1 MGP_AJ_G0028358.1 mouse_genomes_project 4 78039693 78042631 - Mpdz protein_coding retained_intron MGP_AJ_T0066178.1 MGP_AJ_G0028358.1 mouse_genomes_project 4 78042360 78042976 - Mpdz protein_coding retained_intron MGP_AJ_T0066179.1 MGP_AJ_G0028358.1 mouse_genomes_project 4 78056719 78070384 - MGP_AJ_P0066179 Mpdz protein_coding protein_coding MGP_AJ_T0066180.1 MGP_AJ_G0028358.1 mouse_genomes_project 4 78070206 78082287 - MGP_AJ_P0066180 Mpdz protein_coding protein_coding MGP_AJ_T0066181.1 MGP_AJ_G0028358.1 mouse_genomes_project 4 78070228 78085076 - MGP_AJ_P0066181 Mpdz protein_coding protein_coding MGP_AJ_T0066182.1 MGP_AJ_G0028358.1 mouse_genomes_project 4 78096580 78110781 - MGP_AJ_P0066182 Mpdz protein_coding protein_coding MGP_AJ_T0066183.1 MGP_AJ_G0028358.1 mouse_genomes_project 4 78154903 78180965 - Mpdz protein_coding retained_intron MGP_AJ_T0065033.1 MGP_AJ_G0028088.1 mouse_genomes_project 4 31115220 31160142 - MGP_AJ_P0065033 Cfap206 protein_coding protein_coding MGP_AJ_T0065034.1 MGP_AJ_G0028088.1 mouse_genomes_project 4 31115622 31149286 - Cfap206 protein_coding processed_transcript MGP_AJ_T0065035.1 MGP_AJ_G0028088.1 mouse_genomes_project 4 31139426 31160114 - MGP_AJ_P0065035 Cfap206 protein_coding protein_coding MGP_AJ_T0065036.1 MGP_AJ_G0028088.1 mouse_genomes_project 4 31151071 31160131 - MGP_AJ_P0065036 Cfap206 protein_coding nonsense_mediated_decay MGP_AJ_T0065037.1 MGP_AJ_G0028088.1 mouse_genomes_project 4 31151102 31160131 - MGP_AJ_P0065037 Cfap206 protein_coding protein_coding MGP_AJ_T0065038.1 MGP_AJ_G0028088.1 mouse_genomes_project 4 31153218 31160131 - Cfap206 protein_coding processed_transcript MGP_AJ_T0014634.1 MGP_AJ_G0012729.1 mouse_genomes_project 4 81904734 81905137 + processed_pseudogene processed_pseudogene MGP_AJ_T0064898.1 MGP_AJ_G0028056.1 mouse_genomes_project 4 20958588 21043346 + Mms22l protein_coding retained_intron MGP_AJ_T0064899.1 MGP_AJ_G0028056.1 mouse_genomes_project 4 20958588 21064981 + MGP_AJ_P0064899 Mms22l protein_coding protein_coding MGP_AJ_T0064900.1 MGP_AJ_G0028056.1 mouse_genomes_project 4 20958599 20965662 + MGP_AJ_P0064900 Mms22l protein_coding protein_coding MGP_AJ_T0064901.1 MGP_AJ_G0028056.1 mouse_genomes_project 4 20958602 20959182 + Mms22l protein_coding processed_transcript MGP_AJ_T0064902.1 MGP_AJ_G0028056.1 mouse_genomes_project 4 20958681 21064977 + MGP_AJ_P0064902 Mms22l protein_coding protein_coding MGP_AJ_T0064903.1 MGP_AJ_G0028056.1 mouse_genomes_project 4 20960032 20991358 + MGP_AJ_P0064903 Mms22l protein_coding protein_coding MGP_AJ_T0064904.1 MGP_AJ_G0028056.1 mouse_genomes_project 4 20967407 21064980 + Mms22l protein_coding retained_intron MGP_AJ_T0064905.1 MGP_AJ_G0028056.1 mouse_genomes_project 4 20969681 21062016 + MGP_AJ_P0064905 Mms22l protein_coding nonsense_mediated_decay MGP_AJ_T0064906.1 MGP_AJ_G0028056.1 mouse_genomes_project 4 20998543 21036899 + MGP_AJ_P0064906 Mms22l protein_coding protein_coding MGP_AJ_T0064907.1 MGP_AJ_G0028056.1 mouse_genomes_project 4 21040855 21053226 + Mms22l protein_coding processed_transcript MGP_AJ_T0014630.1 MGP_AJ_G0012725.1 mouse_genomes_project 4 81136255 81136562 - processed_pseudogene processed_pseudogene MGP_AJ_T0007997.1 MGP_AJ_G0006523.1 mouse_genomes_project 4 128908269 128909880 + Gm17300 lincRNA lincRNA MGP_AJ_T0068404.1 MGP_AJ_G0028848.1 mouse_genomes_project 4 129810358 129822413 + MGP_AJ_P0068404 Map3k6 protein_coding protein_coding MGP_AJ_T0068405.1 MGP_AJ_G0028848.1 mouse_genomes_project 4 129816720 129817569 + Map3k6 protein_coding processed_transcript MGP_AJ_T0068406.1 MGP_AJ_G0028848.1 mouse_genomes_project 4 129816796 129817597 + Map3k6 protein_coding processed_transcript MGP_AJ_T0068407.1 MGP_AJ_G0028848.1 mouse_genomes_project 4 129820331 129822412 + Map3k6 protein_coding processed_transcript MGP_AJ_T0067378.1 MGP_AJ_G0028615.1 mouse_genomes_project 4 114172246 114180337 - MGP_AJ_P0067378 Klf17 protein_coding protein_coding MGP_AJ_T0065656.1 MGP_AJ_G0028214.1 mouse_genomes_project 4 43016492 43019297 + MGP_AJ_P0065656 Foxe1 protein_coding protein_coding MGP_AJ_T0014703.1 MGP_AJ_G0012798.1 mouse_genomes_project 4 105125424 105125732 + processed_pseudogene processed_pseudogene MGP_AJ_T0101257.1 MGP_AJ_G0039223.1 mouse_genomes_project 4 127391747 127391877 - Gm22660 snoRNA snoRNA MGP_AJ_T0007898.1 MGP_AJ_G0006455.1 mouse_genomes_project 4 88703799 88704898 - 4930577H14Rik lincRNA lincRNA MGP_AJ_T0068667.1 MGP_AJ_G0028908.1 mouse_genomes_project 4 132373946 132430728 + MGP_AJ_P0068667 Myom3 protein_coding protein_coding MGP_AJ_T0068668.1 MGP_AJ_G0028908.1 mouse_genomes_project 4 132413698 132430728 + Myom3 protein_coding retained_intron MGP_AJ_T0068669.1 MGP_AJ_G0028908.1 mouse_genomes_project 4 132416025 132421316 + Myom3 protein_coding retained_intron MGP_AJ_T0068459.1 MGP_AJ_G0028864.1 mouse_genomes_project 4 130429539 130469318 - MGP_AJ_P0068459 Rps6ka1 protein_coding protein_coding MGP_AJ_T0068460.1 MGP_AJ_G0028864.1 mouse_genomes_project 4 130429548 130469470 - MGP_AJ_P0068460 Rps6ka1 protein_coding protein_coding MGP_AJ_T0068461.1 MGP_AJ_G0028864.1 mouse_genomes_project 4 130429548 130456383 - MGP_AJ_P0068461 Rps6ka1 protein_coding protein_coding MGP_AJ_T0068462.1 MGP_AJ_G0028864.1 mouse_genomes_project 4 130430070 130453967 - MGP_AJ_P0068462 Rps6ka1 protein_coding protein_coding MGP_AJ_T0068463.1 MGP_AJ_G0028864.1 mouse_genomes_project 4 130430302 130454683 - MGP_AJ_P0068463 Rps6ka1 protein_coding protein_coding MGP_AJ_T0068464.1 MGP_AJ_G0028864.1 mouse_genomes_project 4 130432677 130442653 - Rps6ka1 protein_coding retained_intron MGP_AJ_T0068465.1 MGP_AJ_G0028864.1 mouse_genomes_project 4 130441890 130442765 - Rps6ka1 protein_coding retained_intron MGP_AJ_T0068466.1 MGP_AJ_G0028864.1 mouse_genomes_project 4 130453617 130469260 - Rps6ka1 protein_coding processed_transcript MGP_AJ_T0004442.1 MGP_AJ_G0003868.1 mouse_genomes_project 4 38089003 38089896 + Gm12405 antisense antisense MGP_AJ_T0001416.1 MGP_AJ_G0001339.1 mouse_genomes_project 4 96296299 96300980 + TEC TEC MGP_AJ_T0065263.1 MGP_AJ_G0028145.1 mouse_genomes_project 4 38253879 38290219 - MGP_AJ_P0065263 protein_coding protein_coding MGP_AJ_T0069043.1 MGP_AJ_G0028998.1 mouse_genomes_project 4 137874785 137903548 - Szrd1 protein_coding processed_transcript MGP_AJ_T0069044.1 MGP_AJ_G0028998.1 mouse_genomes_project 4 137874785 137903548 - Szrd1 protein_coding processed_transcript MGP_AJ_T0069045.1 MGP_AJ_G0028998.1 mouse_genomes_project 4 137874785 137903539 - MGP_AJ_P0069045 Szrd1 protein_coding protein_coding MGP_AJ_T0069046.1 MGP_AJ_G0028998.1 mouse_genomes_project 4 137874785 137903500 - MGP_AJ_P0069046 Szrd1 protein_coding protein_coding MGP_AJ_T0069047.1 MGP_AJ_G0028998.1 mouse_genomes_project 4 137878351 137903513 - Szrd1 protein_coding processed_transcript MGP_AJ_T0102589.1 MGP_AJ_G0040331.1 mouse_genomes_project 4 85365442 85367131 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0067154.1 MGP_AJ_G0028572.1 mouse_genomes_project 4 112274512 112278062 + MGP_AJ_P0067154 Kncn protein_coding protein_coding MGP_AJ_T0067155.1 MGP_AJ_G0028572.1 mouse_genomes_project 4 112275979 112279623 + Kncn protein_coding processed_transcript MGP_AJ_T0004460.1 MGP_AJ_G0003883.1 mouse_genomes_project 4 53822263 53826747 + Gm12530 antisense antisense MGP_AJ_T0102584.1 MGP_AJ_G0040326.1 mouse_genomes_project 4 58685853 58688173 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0069609.1 MGP_AJ_G0029142.1 mouse_genomes_project 4 149845103 149846597 - MGP_AJ_P0069609 Hes3 protein_coding protein_coding MGP_AJ_T0014824.1 MGP_AJ_G0012919.1 mouse_genomes_project 4 142525661 142525755 + processed_pseudogene processed_pseudogene MGP_AJ_T0067003.1 MGP_AJ_G0028537.1 mouse_genomes_project 4 106474175 106761975 + MGP_AJ_P0067003 Faf1 protein_coding protein_coding MGP_AJ_T0067004.1 MGP_AJ_G0028537.1 mouse_genomes_project 4 106474584 106480923 + Faf1 protein_coding processed_transcript MGP_AJ_T0067005.1 MGP_AJ_G0028537.1 mouse_genomes_project 4 106639142 106722419 + Faf1 protein_coding processed_transcript MGP_AJ_T0065108.1 MGP_AJ_G0028105.1 mouse_genomes_project 4 37178251 37202775 - MGP_AJ_P0065108 Smu1 protein_coding protein_coding MGP_AJ_T0065109.1 MGP_AJ_G0028105.1 mouse_genomes_project 4 37185360 37202735 - Smu1 protein_coding processed_transcript MGP_AJ_T0065110.1 MGP_AJ_G0028105.1 mouse_genomes_project 4 37199261 37202683 - Smu1 protein_coding processed_transcript MGP_AJ_T0065111.1 MGP_AJ_G0028105.1 mouse_genomes_project 4 37200585 37202250 - Smu1 protein_coding processed_transcript MGP_AJ_T0068974.1 MGP_AJ_G0028982.1 mouse_genomes_project 4 136460750 136560161 - MGP_AJ_P0068974 Pax7 protein_coding protein_coding MGP_AJ_T0068975.1 MGP_AJ_G0028982.1 mouse_genomes_project 4 136464364 136559640 - MGP_AJ_P0068975 Pax7 protein_coding protein_coding MGP_AJ_T0014811.1 MGP_AJ_G0012906.1 mouse_genomes_project 4 138759474 138760039 + processed_pseudogene processed_pseudogene MGP_AJ_T0068003.1 MGP_AJ_G0028772.1 mouse_genomes_project 4 125784465 125794883 - MGP_AJ_P0068003 Hpca protein_coding protein_coding MGP_AJ_T0068004.1 MGP_AJ_G0028772.1 mouse_genomes_project 4 125784466 125791814 - MGP_AJ_P0068004 Hpca protein_coding protein_coding MGP_AJ_T0068005.1 MGP_AJ_G0028772.1 mouse_genomes_project 4 125784472 125794587 - MGP_AJ_P0068005 Hpca protein_coding protein_coding MGP_AJ_T0068006.1 MGP_AJ_G0028772.1 mouse_genomes_project 4 125784472 125794138 - MGP_AJ_P0068006 Hpca protein_coding protein_coding MGP_AJ_T0068007.1 MGP_AJ_G0028772.1 mouse_genomes_project 4 125785156 125793793 - MGP_AJ_P0068007 Hpca protein_coding protein_coding MGP_AJ_T0068008.1 MGP_AJ_G0028772.1 mouse_genomes_project 4 125785170 125794736 - MGP_AJ_P0068008 Hpca protein_coding protein_coding MGP_AJ_T0068009.1 MGP_AJ_G0028772.1 mouse_genomes_project 4 125785345 125794772 - MGP_AJ_P0068009 Hpca protein_coding protein_coding MGP_AJ_T0068010.1 MGP_AJ_G0028772.1 mouse_genomes_project 4 125785536 125794586 - MGP_AJ_P0068010 Hpca protein_coding protein_coding MGP_AJ_T0068011.1 MGP_AJ_G0028772.1 mouse_genomes_project 4 125791451 125794555 - MGP_AJ_P0068011 Hpca protein_coding protein_coding MGP_AJ_T0069781.1 MGP_AJ_G0029171.1 mouse_genomes_project 4 152675054 152680472 + MGP_AJ_P0069781 Pex10 protein_coding protein_coding MGP_AJ_T0069782.1 MGP_AJ_G0029171.1 mouse_genomes_project 4 152675092 152676920 + Pex10 protein_coding processed_transcript MGP_AJ_T0069783.1 MGP_AJ_G0029171.1 mouse_genomes_project 4 152675095 152680220 + Pex10 protein_coding processed_transcript MGP_AJ_T0069784.1 MGP_AJ_G0029171.1 mouse_genomes_project 4 152675097 152676062 + Pex10 protein_coding processed_transcript MGP_AJ_T0069785.1 MGP_AJ_G0029171.1 mouse_genomes_project 4 152675097 152677155 + Pex10 protein_coding processed_transcript MGP_AJ_T0065491.1 MGP_AJ_G0028185.1 mouse_genomes_project 4 40515116 40586824 + Reck protein_coding processed_transcript MGP_AJ_T0065492.1 MGP_AJ_G0028185.1 mouse_genomes_project 4 40515116 40586885 + MGP_AJ_P0065492 Reck protein_coding protein_coding MGP_AJ_T0065493.1 MGP_AJ_G0028185.1 mouse_genomes_project 4 40582476 40584461 + Reck protein_coding processed_transcript MGP_AJ_T0066595.1 MGP_AJ_G0028463.1 mouse_genomes_project 4 98867359 99405102 + MGP_AJ_P0066595 Pde4b protein_coding protein_coding MGP_AJ_T0066596.1 MGP_AJ_G0028463.1 mouse_genomes_project 4 98867541 98984226 + Pde4b protein_coding retained_intron MGP_AJ_T0066597.1 MGP_AJ_G0028463.1 mouse_genomes_project 4 98867557 99356142 + MGP_AJ_P0066597 Pde4b protein_coding nonsense_mediated_decay MGP_AJ_T0066598.1 MGP_AJ_G0028463.1 mouse_genomes_project 4 99043853 99354469 + MGP_AJ_P0066598 Pde4b protein_coding protein_coding MGP_AJ_T0066599.1 MGP_AJ_G0028463.1 mouse_genomes_project 4 99044113 99406528 + MGP_AJ_P0066599 Pde4b protein_coding protein_coding MGP_AJ_T0066600.1 MGP_AJ_G0028463.1 mouse_genomes_project 4 99044340 99304245 + MGP_AJ_P0066600 Pde4b protein_coding nonsense_mediated_decay MGP_AJ_T0066601.1 MGP_AJ_G0028463.1 mouse_genomes_project 4 99216625 99404805 + MGP_AJ_P0066601 Pde4b protein_coding protein_coding MGP_AJ_T0066602.1 MGP_AJ_G0028463.1 mouse_genomes_project 4 99225181 99340341 + MGP_AJ_P0066602 Pde4b protein_coding protein_coding MGP_AJ_T0066603.1 MGP_AJ_G0028463.1 mouse_genomes_project 4 99266054 99285958 + Pde4b protein_coding retained_intron MGP_AJ_T0066604.1 MGP_AJ_G0028463.1 mouse_genomes_project 4 99368613 99405116 + MGP_AJ_P0066604 Pde4b protein_coding protein_coding MGP_AJ_T0066605.1 MGP_AJ_G0028463.1 mouse_genomes_project 4 99386821 99404972 + MGP_AJ_P0066605 Pde4b protein_coding protein_coding MGP_AJ_T0066606.1 MGP_AJ_G0028463.1 mouse_genomes_project 4 99388990 99405130 + MGP_AJ_P0066606 Pde4b protein_coding protein_coding MGP_AJ_T0066607.1 MGP_AJ_G0028463.1 mouse_genomes_project 4 99389110 99402715 + MGP_AJ_P0066607 Pde4b protein_coding protein_coding MGP_AJ_T0010616.1 MGP_AJ_G0008738.1 mouse_genomes_project 4 121340202 121340311 + Mir698 miRNA miRNA MGP_AJ_T0065973.1 MGP_AJ_G0028307.1 mouse_genomes_project 4 58936758 58955633 - MGP_AJ_P0065973 Zfp37 protein_coding protein_coding MGP_AJ_T0065974.1 MGP_AJ_G0028307.1 mouse_genomes_project 4 58938192 58955548 - MGP_AJ_P0065974 Zfp37 protein_coding unknown_likely_coding MGP_AJ_T0065975.1 MGP_AJ_G0028307.1 mouse_genomes_project 4 58938192 58955548 - MGP_AJ_P0065975 Zfp37 protein_coding unknown_likely_coding MGP_AJ_T0065976.1 MGP_AJ_G0028307.1 mouse_genomes_project 4 58939756 58955389 - Zfp37 protein_coding processed_transcript MGP_AJ_T0065977.1 MGP_AJ_G0028307.1 mouse_genomes_project 4 58939807 58955076 - Zfp37 protein_coding processed_transcript MGP_AJ_T0064842.1 MGP_AJ_G0028044.1 mouse_genomes_project 4 16561750 16575405 + MGP_AJ_P0064842 Ttpa protein_coding protein_coding MGP_AJ_T0064843.1 MGP_AJ_G0028044.1 mouse_genomes_project 4 16561822 16585305 + MGP_AJ_P0064843 Ttpa protein_coding protein_coding MGP_AJ_T0064844.1 MGP_AJ_G0028044.1 mouse_genomes_project 4 16562172 16585620 + MGP_AJ_P0064844 Ttpa protein_coding protein_coding MGP_AJ_T0064845.1 MGP_AJ_G0028044.1 mouse_genomes_project 4 16562243 16585620 + MGP_AJ_P0064845 Ttpa protein_coding protein_coding MGP_AJ_T0010633.1 MGP_AJ_G0008755.1 mouse_genomes_project 4 133250555 133250614 - Gm22180 miRNA miRNA MGP_AJ_T0101197.1 MGP_AJ_G0039163.1 mouse_genomes_project 4 33703884 33704005 + Gm22732 snoRNA snoRNA MGP_AJ_T0004565.1 MGP_AJ_G0003962.1 mouse_genomes_project 4 135888858 135894105 - Gm16287 antisense antisense MGP_AJ_T0014409.1 MGP_AJ_G0012504.1 mouse_genomes_project 4 7661217 7661780 + processed_pseudogene processed_pseudogene MGP_AJ_T0099924.1 MGP_AJ_G0037890.1 mouse_genomes_project 4 64978306 64978477 + Gm23738 snRNA snRNA MGP_AJ_T0067076.1 MGP_AJ_G0028548.1 mouse_genomes_project 4 108972539 109035372 - MGP_AJ_P0067076 Skint10 protein_coding protein_coding MGP_AJ_T0067077.1 MGP_AJ_G0028548.1 mouse_genomes_project 4 109030160 109035413 - MGP_AJ_P0067077 Skint10 protein_coding protein_coding MGP_AJ_T0067078.1 MGP_AJ_G0028548.1 mouse_genomes_project 4 109031585 109035374 - Skint10 protein_coding processed_transcript MGP_AJ_T0068563.1 MGP_AJ_G0028884.1 mouse_genomes_project 4 130956936 130974648 - MGP_AJ_P0068563 Extl1 protein_coding protein_coding MGP_AJ_T0068564.1 MGP_AJ_G0028884.1 mouse_genomes_project 4 130961917 130985830 - Extl1 protein_coding processed_transcript MGP_AJ_T0068565.1 MGP_AJ_G0028884.1 mouse_genomes_project 4 130964053 130966765 - Extl1 protein_coding processed_transcript MGP_AJ_T0067860.1 MGP_AJ_G0028738.1 mouse_genomes_project 4 122959146 122962713 - MGP_AJ_P0067860 Tekt2 protein_coding protein_coding MGP_AJ_T0067861.1 MGP_AJ_G0028738.1 mouse_genomes_project 4 122959148 122962223 - MGP_AJ_P0067861 Tekt2 protein_coding protein_coding MGP_AJ_T0067862.1 MGP_AJ_G0028738.1 mouse_genomes_project 4 122960733 122962655 - Tekt2 protein_coding retained_intron MGP_AJ_T0067863.1 MGP_AJ_G0028738.1 mouse_genomes_project 4 122961363 122962668 - MGP_AJ_P0067863 Tekt2 protein_coding protein_coding MGP_AJ_T0067864.1 MGP_AJ_G0028738.1 mouse_genomes_project 4 122961907 122962460 - MGP_AJ_P0067864 Tekt2 protein_coding protein_coding MGP_AJ_T0066365.1 MGP_AJ_G0028407.1 mouse_genomes_project 4 88035828 88184792 - MGP_AJ_P0066365 Elavl2 protein_coding protein_coding MGP_AJ_T0066366.1 MGP_AJ_G0028407.1 mouse_genomes_project 4 88035828 88156786 - MGP_AJ_P0066366 Elavl2 protein_coding protein_coding MGP_AJ_T0066367.1 MGP_AJ_G0028407.1 mouse_genomes_project 4 88035828 88156821 - MGP_AJ_P0066367 Elavl2 protein_coding protein_coding MGP_AJ_T0066368.1 MGP_AJ_G0028407.1 mouse_genomes_project 4 88035828 88156806 - MGP_AJ_P0066368 Elavl2 protein_coding protein_coding MGP_AJ_T0066369.1 MGP_AJ_G0028407.1 mouse_genomes_project 4 88038145 88039648 - Elavl2 protein_coding retained_intron MGP_AJ_T0066370.1 MGP_AJ_G0028407.1 mouse_genomes_project 4 88038305 88096726 - MGP_AJ_P0066370 Elavl2 protein_coding protein_coding MGP_AJ_T0066371.1 MGP_AJ_G0028407.1 mouse_genomes_project 4 88038305 88098493 - MGP_AJ_P0066371 Elavl2 protein_coding protein_coding MGP_AJ_T0066372.1 MGP_AJ_G0028407.1 mouse_genomes_project 4 88043731 88161069 - Elavl2 protein_coding retained_intron MGP_AJ_T0066373.1 MGP_AJ_G0028407.1 mouse_genomes_project 4 88049174 88141715 - MGP_AJ_P0066373 Elavl2 protein_coding protein_coding MGP_AJ_T0066374.1 MGP_AJ_G0028407.1 mouse_genomes_project 4 88093755 88157782 - MGP_AJ_P0066374 Elavl2 protein_coding protein_coding MGP_AJ_T0066375.1 MGP_AJ_G0028407.1 mouse_genomes_project 4 88093849 88156708 - MGP_AJ_P0066375 Elavl2 protein_coding protein_coding MGP_AJ_T0066376.1 MGP_AJ_G0028407.1 mouse_genomes_project 4 88165193 88184784 - Elavl2 protein_coding processed_transcript MGP_AJ_T0066377.1 MGP_AJ_G0028407.1 mouse_genomes_project 4 88184702 88187027 - Elavl2 protein_coding processed_transcript MGP_AJ_T0064847.1 MGP_AJ_G0028046.1 mouse_genomes_project 4 16667570 17309691 - MGP_AJ_P0064847 Nkain3 protein_coding protein_coding MGP_AJ_T0064848.1 MGP_AJ_G0028046.1 mouse_genomes_project 4 16780729 17309990 - MGP_AJ_P0064848 Nkain3 protein_coding protein_coding MGP_AJ_T0014726.1 MGP_AJ_G0012821.1 mouse_genomes_project 4 113280570 113281448 - processed_pseudogene processed_pseudogene MGP_AJ_T0004443.1 MGP_AJ_G0003869.1 mouse_genomes_project 4 40146306 40150609 - Gm12454 antisense antisense MGP_AJ_T0004444.1 MGP_AJ_G0003869.1 mouse_genomes_project 4 40147535 40150632 - Gm12454 antisense antisense MGP_AJ_T0066637.1 MGP_AJ_G0028468.1 mouse_genomes_project 4 99914143 99915658 + Mier1 protein_coding processed_transcript MGP_AJ_T0066638.1 MGP_AJ_G0028468.1 mouse_genomes_project 4 99914148 99966086 + MGP_AJ_P0066638 Mier1 protein_coding protein_coding MGP_AJ_T0066639.1 MGP_AJ_G0028468.1 mouse_genomes_project 4 99914184 99930776 + Mier1 protein_coding processed_transcript MGP_AJ_T0066640.1 MGP_AJ_G0028468.1 mouse_genomes_project 4 99914218 99943501 + Mier1 protein_coding processed_transcript MGP_AJ_T0066641.1 MGP_AJ_G0028468.1 mouse_genomes_project 4 99914515 99918056 + MGP_AJ_P0066641 Mier1 protein_coding protein_coding MGP_AJ_T0066642.1 MGP_AJ_G0028468.1 mouse_genomes_project 4 99914709 99918420 + Mier1 protein_coding processed_transcript MGP_AJ_T0066643.1 MGP_AJ_G0028468.1 mouse_genomes_project 4 99915025 99927052 + MGP_AJ_P0066643 Mier1 protein_coding protein_coding MGP_AJ_T0066644.1 MGP_AJ_G0028468.1 mouse_genomes_project 4 99915313 99966081 + MGP_AJ_P0066644 Mier1 protein_coding protein_coding MGP_AJ_T0066645.1 MGP_AJ_G0028468.1 mouse_genomes_project 4 99915391 99966081 + MGP_AJ_P0066645 Mier1 protein_coding protein_coding MGP_AJ_T0066646.1 MGP_AJ_G0028468.1 mouse_genomes_project 4 99917048 99918344 + Mier1 protein_coding processed_transcript MGP_AJ_T0066647.1 MGP_AJ_G0028468.1 mouse_genomes_project 4 99919039 99966084 + MGP_AJ_P0066647 Mier1 protein_coding protein_coding MGP_AJ_T0066648.1 MGP_AJ_G0028468.1 mouse_genomes_project 4 99919143 99942881 + Mier1 protein_coding retained_intron MGP_AJ_T0066649.1 MGP_AJ_G0028468.1 mouse_genomes_project 4 99919163 99944754 + Mier1 protein_coding retained_intron MGP_AJ_T0066650.1 MGP_AJ_G0028468.1 mouse_genomes_project 4 99943364 99963077 + MGP_AJ_P0066650 Mier1 protein_coding protein_coding MGP_AJ_T0066651.1 MGP_AJ_G0028468.1 mouse_genomes_project 4 99958888 99963146 + Mier1 protein_coding processed_transcript MGP_AJ_T0067519.1 MGP_AJ_G0028652.1 mouse_genomes_project 4 115658531 115672034 - MGP_AJ_P0067519 4930538K18Rik protein_coding protein_coding MGP_AJ_T0007807.1 MGP_AJ_G0006376.1 mouse_genomes_project 4 7638490 7642693 + Gm11827 lincRNA lincRNA MGP_AJ_T0007808.1 MGP_AJ_G0006376.1 mouse_genomes_project 4 7639626 7642693 + Gm11827 lincRNA lincRNA MGP_AJ_T0066929.1 MGP_AJ_G0028523.1 mouse_genomes_project 4 105523033 105585724 + MGP_AJ_P0066929 3110021N24Rik protein_coding protein_coding MGP_AJ_T0004607.1 MGP_AJ_G0003994.1 mouse_genomes_project 4 151548428 151554609 - antisense antisense MGP_AJ_T0014669.1 MGP_AJ_G0012764.1 mouse_genomes_project 4 95083574 95083882 + processed_pseudogene processed_pseudogene MGP_AJ_T0004602.1 MGP_AJ_G0003989.1 mouse_genomes_project 4 147375093 147379233 + Gm13070 antisense antisense MGP_AJ_T0065578.1 MGP_AJ_G0028197.1 mouse_genomes_project 4 41699784 41751133 - MGP_AJ_P0065578 Fbxo10 protein_coding protein_coding MGP_AJ_T0065579.1 MGP_AJ_G0028197.1 mouse_genomes_project 4 41699785 41728418 - MGP_AJ_P0065579 Fbxo10 protein_coding protein_coding MGP_AJ_T0065580.1 MGP_AJ_G0028197.1 mouse_genomes_project 4 41712701 41725032 - Fbxo10 protein_coding processed_transcript MGP_AJ_T0101213.1 MGP_AJ_G0039179.1 mouse_genomes_project 4 52098155 52098289 - Gm22150 snoRNA snoRNA MGP_AJ_T0014791.1 MGP_AJ_G0012886.1 mouse_genomes_project 4 131904669 131904979 - processed_pseudogene processed_pseudogene MGP_AJ_T0066451.1 MGP_AJ_G0028426.1 mouse_genomes_project 4 93147567 93204755 - MGP_AJ_P0066451 Cyp2j8 protein_coding protein_coding MGP_AJ_T0068748.1 MGP_AJ_G0028926.1 mouse_genomes_project 4 133099454 133101152 + MGP_AJ_P0068748 protein_coding protein_coding MGP_AJ_T0014693.1 MGP_AJ_G0012788.1 mouse_genomes_project 4 102379195 102379796 + processed_pseudogene processed_pseudogene MGP_AJ_T0014641.1 MGP_AJ_G0012736.1 mouse_genomes_project 4 84950836 84951111 + processed_pseudogene processed_pseudogene MGP_AJ_T0068990.1 MGP_AJ_G0028986.1 mouse_genomes_project 4 137448254 137470803 + MGP_AJ_P0068990 Rcc2 protein_coding protein_coding MGP_AJ_T0068991.1 MGP_AJ_G0028986.1 mouse_genomes_project 4 137449186 137470803 + MGP_AJ_P0068991 Rcc2 protein_coding protein_coding MGP_AJ_T0068992.1 MGP_AJ_G0028986.1 mouse_genomes_project 4 137449186 137458055 + MGP_AJ_P0068992 Rcc2 protein_coding protein_coding MGP_AJ_T0068993.1 MGP_AJ_G0028986.1 mouse_genomes_project 4 137461935 137464769 + Rcc2 protein_coding processed_transcript MGP_AJ_T0068994.1 MGP_AJ_G0028986.1 mouse_genomes_project 4 137461962 137464677 + Rcc2 protein_coding processed_transcript MGP_AJ_T0065985.1 MGP_AJ_G0028310.1 mouse_genomes_project 4 59118968 59150207 + MGP_AJ_P0065985 Slc31a1 protein_coding protein_coding MGP_AJ_T0065987.1 MGP_AJ_G0028310.1 mouse_genomes_project 4 59143929 59150207 + MGP_AJ_P0065987 Slc31a1 protein_coding protein_coding MGP_AJ_T0069768.1 MGP_AJ_G0029170.1 mouse_genomes_project 4 152586773 152618009 - MGP_AJ_P0069768 Plch2 protein_coding protein_coding MGP_AJ_T0069769.1 MGP_AJ_G0029170.1 mouse_genomes_project 4 152586778 152626301 - MGP_AJ_P0069769 Plch2 protein_coding unknown_likely_coding MGP_AJ_T0069770.1 MGP_AJ_G0029170.1 mouse_genomes_project 4 152586784 152603208 - Plch2 protein_coding retained_intron MGP_AJ_T0069771.1 MGP_AJ_G0029170.1 mouse_genomes_project 4 152587025 152614032 - MGP_AJ_P0069771 Plch2 protein_coding protein_coding MGP_AJ_T0069772.1 MGP_AJ_G0029170.1 mouse_genomes_project 4 152587025 152593476 - MGP_AJ_P0069772 Plch2 protein_coding protein_coding MGP_AJ_T0069773.1 MGP_AJ_G0029170.1 mouse_genomes_project 4 152587025 152626491 - MGP_AJ_P0069773 Plch2 protein_coding protein_coding MGP_AJ_T0069774.1 MGP_AJ_G0029170.1 mouse_genomes_project 4 152587031 152599665 - Plch2 protein_coding retained_intron MGP_AJ_T0069775.1 MGP_AJ_G0029170.1 mouse_genomes_project 4 152587035 152618009 - MGP_AJ_P0069775 Plch2 protein_coding protein_coding MGP_AJ_T0069776.1 MGP_AJ_G0029170.1 mouse_genomes_project 4 152587320 152650153 - MGP_AJ_P0069776 Plch2 protein_coding protein_coding MGP_AJ_T0069777.1 MGP_AJ_G0029170.1 mouse_genomes_project 4 152589357 152661754 - MGP_AJ_P0069777 Plch2 protein_coding protein_coding MGP_AJ_T0069778.1 MGP_AJ_G0029170.1 mouse_genomes_project 4 152605187 152618009 - MGP_AJ_P0069778 Plch2 protein_coding protein_coding MGP_AJ_T0069779.1 MGP_AJ_G0029170.1 mouse_genomes_project 4 152614095 152663771 - MGP_AJ_P0069779 Plch2 protein_coding protein_coding MGP_AJ_T0069780.1 MGP_AJ_G0029170.1 mouse_genomes_project 4 152616101 152626487 - MGP_AJ_P0069780 Plch2 protein_coding protein_coding MGP_AJ_T0068444.1 MGP_AJ_G0028860.1 mouse_genomes_project 4 130183262 130184696 - MGP_AJ_P0068444 Sfn protein_coding protein_coding MGP_AJ_T0067640.1 MGP_AJ_G0028678.1 mouse_genomes_project 4 117438736 117487364 - MGP_AJ_P0067640 Smap2 protein_coding protein_coding MGP_AJ_T0067641.1 MGP_AJ_G0028678.1 mouse_genomes_project 4 117442300 117446070 - Smap2 protein_coding processed_transcript MGP_AJ_T0101181.1 MGP_AJ_G0039147.1 mouse_genomes_project 4 320442 320579 - Gm22781 snoRNA snoRNA MGP_AJ_T0099942.1 MGP_AJ_G0037908.1 mouse_genomes_project 4 105307025 105307128 + Gm23138 snRNA snRNA MGP_AJ_T0014588.1 MGP_AJ_G0012683.1 mouse_genomes_project 4 66629286 66630024 + processed_pseudogene processed_pseudogene MGP_AJ_T0014721.1 MGP_AJ_G0012816.1 mouse_genomes_project 4 112053622 112054714 + processed_pseudogene processed_pseudogene MGP_AJ_T0066748.1 MGP_AJ_G0028493.1 mouse_genomes_project 4 103875184 103886445 + Cyb5rl protein_coding retained_intron MGP_AJ_T0066749.1 MGP_AJ_G0028493.1 mouse_genomes_project 4 103875192 103895704 + MGP_AJ_P0066749 Cyb5rl protein_coding protein_coding MGP_AJ_T0066750.1 MGP_AJ_G0028493.1 mouse_genomes_project 4 103875192 103879112 + MGP_AJ_P0066750 Cyb5rl protein_coding protein_coding MGP_AJ_T0066751.1 MGP_AJ_G0028493.1 mouse_genomes_project 4 103875215 103896411 + MGP_AJ_P0066751 Cyb5rl protein_coding nonsense_mediated_decay MGP_AJ_T0066752.1 MGP_AJ_G0028493.1 mouse_genomes_project 4 103875220 103879128 + MGP_AJ_P0066752 Cyb5rl protein_coding protein_coding MGP_AJ_T0066753.1 MGP_AJ_G0028493.1 mouse_genomes_project 4 103875563 103893976 + MGP_AJ_P0066753 Cyb5rl protein_coding unknown_likely_coding MGP_AJ_T0066754.1 MGP_AJ_G0028493.1 mouse_genomes_project 4 103876801 103893969 + MGP_AJ_P0066754 Cyb5rl protein_coding protein_coding MGP_AJ_T0066755.1 MGP_AJ_G0028493.1 mouse_genomes_project 4 103876839 103896134 + MGP_AJ_P0066755 Cyb5rl protein_coding nonsense_mediated_decay MGP_AJ_T0066756.1 MGP_AJ_G0028493.1 mouse_genomes_project 4 103878364 103892948 + MGP_AJ_P0066756 Cyb5rl protein_coding protein_coding MGP_AJ_T0066757.1 MGP_AJ_G0028493.1 mouse_genomes_project 4 103879066 103892483 + MGP_AJ_P0066757 Cyb5rl protein_coding protein_coding MGP_AJ_T0066758.1 MGP_AJ_G0028493.1 mouse_genomes_project 4 103889158 103895920 + MGP_AJ_P0066758 Cyb5rl protein_coding protein_coding MGP_AJ_T0069972.1 MGP_AJ_G0029205.1 mouse_genomes_project 4 153572885 153577168 + MGP_AJ_P0069972 Fam132a protein_coding protein_coding MGP_AJ_T0069973.1 MGP_AJ_G0029205.1 mouse_genomes_project 4 153575111 153575733 + Fam132a protein_coding processed_transcript MGP_AJ_T0069974.1 MGP_AJ_G0029205.1 mouse_genomes_project 4 153575647 153577160 + Fam132a protein_coding processed_transcript MGP_AJ_T0010638.1 MGP_AJ_G0008760.1 mouse_genomes_project 4 135026853 135026963 - Gm27646 miRNA miRNA MGP_AJ_T0067191.1 MGP_AJ_G0028580.1 mouse_genomes_project 4 112516971 112533036 + Pomgnt1 protein_coding processed_transcript MGP_AJ_T0067193.1 MGP_AJ_G0028580.1 mouse_genomes_project 4 112531422 112554519 + MGP_AJ_P0067193 Pomgnt1 protein_coding protein_coding MGP_AJ_T0067194.1 MGP_AJ_G0028580.1 mouse_genomes_project 4 112531437 112554520 + Pomgnt1 protein_coding retained_intron MGP_AJ_T0067196.1 MGP_AJ_G0028580.1 mouse_genomes_project 4 112531940 112554515 + MGP_AJ_P0067196 Pomgnt1 protein_coding protein_coding MGP_AJ_T0067197.1 MGP_AJ_G0028580.1 mouse_genomes_project 4 112545188 112554515 + MGP_AJ_P0067197 Pomgnt1 protein_coding protein_coding MGP_AJ_T0067198.1 MGP_AJ_G0028580.1 mouse_genomes_project 4 112545195 112554515 + MGP_AJ_P0067198 Pomgnt1 protein_coding protein_coding MGP_AJ_T0067199.1 MGP_AJ_G0028580.1 mouse_genomes_project 4 112546101 112554108 + MGP_AJ_P0067199 Pomgnt1 protein_coding protein_coding MGP_AJ_T0067200.1 MGP_AJ_G0028580.1 mouse_genomes_project 4 112549265 112550463 + Pomgnt1 protein_coding processed_transcript MGP_AJ_T0067201.1 MGP_AJ_G0028580.1 mouse_genomes_project 4 112549989 112553665 + Pomgnt1 protein_coding retained_intron MGP_AJ_T0067202.1 MGP_AJ_G0028580.1 mouse_genomes_project 4 112550607 112551324 + Pomgnt1 protein_coding retained_intron MGP_AJ_T0067203.1 MGP_AJ_G0028580.1 mouse_genomes_project 4 112550619 112553729 + Pomgnt1 protein_coding processed_transcript MGP_AJ_T0067204.1 MGP_AJ_G0028580.1 mouse_genomes_project 4 112552062 112553696 + Pomgnt1 protein_coding retained_intron MGP_AJ_T0007822.1 MGP_AJ_G0006389.1 mouse_genomes_project 4 19747679 19885066 + Gm11884 lincRNA lincRNA MGP_AJ_T0099953.1 MGP_AJ_G0037919.1 mouse_genomes_project 4 115990316 115990423 + Rnu6-ps2 snRNA snRNA MGP_AJ_T0065828.1 MGP_AJ_G0028266.1 mouse_genomes_project 4 51973669 52017353 + MGP_AJ_P0065828 Rad23b protein_coding protein_coding MGP_AJ_T0065829.1 MGP_AJ_G0028266.1 mouse_genomes_project 4 51973676 51992919 + Rad23b protein_coding processed_transcript MGP_AJ_T0065830.1 MGP_AJ_G0028266.1 mouse_genomes_project 4 51973678 51974811 + Rad23b protein_coding processed_transcript MGP_AJ_T0065831.1 MGP_AJ_G0028266.1 mouse_genomes_project 4 51973716 52005460 + Rad23b protein_coding processed_transcript MGP_AJ_T0068977.1 MGP_AJ_G0028984.1 mouse_genomes_project 4 136756380 136979317 - MGP_AJ_P0068977 Igsf21 protein_coding protein_coding MGP_AJ_T0069260.1 MGP_AJ_G0029076.1 mouse_genomes_project 4 145352465 145358885 + MGP_AJ_P0069260 2510039O18Rik protein_coding protein_coding MGP_AJ_T0069204.1 MGP_AJ_G0029056.1 mouse_genomes_project 4 141455739 141461443 - MGP_AJ_P0069204 Gm13125 protein_coding protein_coding MGP_AJ_T0014705.1 MGP_AJ_G0012800.1 mouse_genomes_project 4 105293216 105293598 - processed_pseudogene processed_pseudogene MGP_AJ_T0066162.1 MGP_AJ_G0028355.1 mouse_genomes_project 4 76773699 76775569 + MGP_AJ_P0066162 protein_coding protein_coding MGP_AJ_T0067989.1 MGP_AJ_G0028769.1 mouse_genomes_project 4 125665518 125675818 + Ak2 protein_coding processed_transcript MGP_AJ_T0067990.1 MGP_AJ_G0028769.1 mouse_genomes_project 4 125666784 125685086 + MGP_AJ_P0067990 Ak2 protein_coding protein_coding MGP_AJ_T0067991.1 MGP_AJ_G0028769.1 mouse_genomes_project 4 125666784 125681958 + MGP_AJ_P0067991 Ak2 protein_coding protein_coding MGP_AJ_T0067992.1 MGP_AJ_G0028769.1 mouse_genomes_project 4 125666913 125681786 + MGP_AJ_P0067992 Ak2 protein_coding nonsense_mediated_decay MGP_AJ_T0068976.1 MGP_AJ_G0028983.1 mouse_genomes_project 4 136686738 136695487 - MGP_AJ_P0068976 Klhdc7a protein_coding protein_coding MGP_AJ_T0069898.1 MGP_AJ_G0029193.1 mouse_genomes_project 4 153408573 153411307 + MGP_AJ_P0069898 Ankrd65 protein_coding protein_coding MGP_AJ_T0069899.1 MGP_AJ_G0029193.1 mouse_genomes_project 4 153409306 153418135 + MGP_AJ_P0069899 Ankrd65 protein_coding protein_coding MGP_AJ_T0014635.1 MGP_AJ_G0012730.1 mouse_genomes_project 4 81966696 81967008 - processed_pseudogene processed_pseudogene MGP_AJ_T0010614.1 MGP_AJ_G0008736.1 mouse_genomes_project 4 120211560 120211662 + Mir6398 miRNA miRNA MGP_AJ_T0014778.1 MGP_AJ_G0012873.1 mouse_genomes_project 4 128642694 128643102 + processed_pseudogene processed_pseudogene MGP_AJ_T0102612.1 MGP_AJ_G0040354.1 mouse_genomes_project 4 118704173 119111175 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0064981.1 MGP_AJ_G0028074.1 mouse_genomes_project 4 29382239 29422811 + MGP_AJ_P0064981 Rragd protein_coding protein_coding MGP_AJ_T0064982.1 MGP_AJ_G0028074.1 mouse_genomes_project 4 29382543 29419429 + MGP_AJ_P0064982 Rragd protein_coding protein_coding MGP_AJ_T0064983.1 MGP_AJ_G0028074.1 mouse_genomes_project 4 29405345 29419449 + Rragd protein_coding processed_transcript MGP_AJ_T0064980.1 MGP_AJ_G0028073.1 mouse_genomes_project 4 29362783 29363335 + MGP_AJ_P0064980 protein_coding protein_coding MGP_AJ_T0069075.1 MGP_AJ_G0029007.1 mouse_genomes_project 4 138201595 138205029 - MGP_AJ_P0069075 Gm694 protein_coding protein_coding MGP_AJ_T0010599.1 MGP_AJ_G0008721.1 mouse_genomes_project 4 88158035 88158115 - Mir6402 miRNA miRNA MGP_AJ_T0018030.1 MGP_AJ_G0015511.1 mouse_genomes_project 4 12729323 12826740 + A530072M11Rik processed_transcript processed_transcript MGP_AJ_T0065494.1 MGP_AJ_G0028186.1 mouse_genomes_project 4 40599353 40621287 + MGP_AJ_P0065494 Glipr2 protein_coding protein_coding MGP_AJ_T0065495.1 MGP_AJ_G0028186.1 mouse_genomes_project 4 40599644 40621287 + MGP_AJ_P0065495 Glipr2 protein_coding protein_coding MGP_AJ_T0014753.1 MGP_AJ_G0012848.1 mouse_genomes_project 4 118498090 118499196 + processed_pseudogene processed_pseudogene MGP_AJ_T0011570.1 MGP_AJ_G0009692.1 mouse_genomes_project 4 67183704 67184010 - Gm26320 misc_RNA misc_RNA MGP_AJ_T0101209.1 MGP_AJ_G0039175.1 mouse_genomes_project 4 48308227 48308336 + Gm23043 snoRNA snoRNA MGP_AJ_T0067686.1 MGP_AJ_G0028695.1 mouse_genomes_project 4 119745374 119756943 + MGP_AJ_P0067686 Hpcal4 protein_coding protein_coding MGP_AJ_T0067687.1 MGP_AJ_G0028695.1 mouse_genomes_project 4 119745386 119753755 + MGP_AJ_P0067687 Hpcal4 protein_coding protein_coding MGP_AJ_T0067688.1 MGP_AJ_G0028695.1 mouse_genomes_project 4 119745646 119751040 + MGP_AJ_P0067688 Hpcal4 protein_coding protein_coding MGP_AJ_T0067689.1 MGP_AJ_G0028695.1 mouse_genomes_project 4 119745663 119746297 + Hpcal4 protein_coding processed_transcript MGP_AJ_T0067690.1 MGP_AJ_G0028695.1 mouse_genomes_project 4 119745876 119752986 + MGP_AJ_P0067690 Hpcal4 protein_coding protein_coding MGP_AJ_T0014575.1 MGP_AJ_G0012670.1 mouse_genomes_project 4 56192704 56192972 + processed_pseudogene processed_pseudogene MGP_AJ_T0014394.1 MGP_AJ_G0012489.1 mouse_genomes_project 4 2792797 2793672 - processed_pseudogene processed_pseudogene MGP_AJ_T0014469.1 MGP_AJ_G0012564.1 mouse_genomes_project 4 24013651 24014088 + processed_pseudogene processed_pseudogene MGP_AJ_T0068086.1 MGP_AJ_G0028790.1 mouse_genomes_project 4 126278278 126284971 + MGP_AJ_P0068086 Tmem234 protein_coding nonsense_mediated_decay MGP_AJ_T0068087.1 MGP_AJ_G0028790.1 mouse_genomes_project 4 126278278 126285541 + MGP_AJ_P0068087 Tmem234 protein_coding nonsense_mediated_decay MGP_AJ_T0068088.1 MGP_AJ_G0028790.1 mouse_genomes_project 4 126278279 126296830 + MGP_AJ_P0068088 Tmem234 protein_coding nonsense_mediated_decay MGP_AJ_T0068089.1 MGP_AJ_G0028790.1 mouse_genomes_project 4 126278290 126285952 + MGP_AJ_P0068089 Tmem234 protein_coding protein_coding MGP_AJ_T0068090.1 MGP_AJ_G0028790.1 mouse_genomes_project 4 126278291 126284960 + MGP_AJ_P0068090 Tmem234 protein_coding protein_coding MGP_AJ_T0068091.1 MGP_AJ_G0028790.1 mouse_genomes_project 4 126278297 126285150 + MGP_AJ_P0068091 Tmem234 protein_coding nonsense_mediated_decay MGP_AJ_T0068092.1 MGP_AJ_G0028790.1 mouse_genomes_project 4 126278301 126301098 + MGP_AJ_P0068092 Tmem234 protein_coding nonsense_mediated_decay MGP_AJ_T0068093.1 MGP_AJ_G0028790.1 mouse_genomes_project 4 126278301 126285229 + MGP_AJ_P0068093 Tmem234 protein_coding nonsense_mediated_decay MGP_AJ_T0068094.1 MGP_AJ_G0028790.1 mouse_genomes_project 4 126278301 126284995 + MGP_AJ_P0068094 Tmem234 protein_coding protein_coding MGP_AJ_T0068095.1 MGP_AJ_G0028790.1 mouse_genomes_project 4 126278305 126285238 + MGP_AJ_P0068095 Tmem234 protein_coding nonsense_mediated_decay MGP_AJ_T0068096.1 MGP_AJ_G0028790.1 mouse_genomes_project 4 126278310 126285945 + MGP_AJ_P0068096 Tmem234 protein_coding nonsense_mediated_decay MGP_AJ_T0068097.1 MGP_AJ_G0028790.1 mouse_genomes_project 4 126278311 126284575 + MGP_AJ_P0068097 Tmem234 protein_coding nonsense_mediated_decay MGP_AJ_T0068098.1 MGP_AJ_G0028790.1 mouse_genomes_project 4 126278312 126285290 + Tmem234 protein_coding retained_intron MGP_AJ_T0068099.1 MGP_AJ_G0028790.1 mouse_genomes_project 4 126278313 126284592 + MGP_AJ_P0068099 Tmem234 protein_coding nonsense_mediated_decay MGP_AJ_T0068100.1 MGP_AJ_G0028790.1 mouse_genomes_project 4 126278314 126280310 + Tmem234 protein_coding processed_transcript MGP_AJ_T0068101.1 MGP_AJ_G0028790.1 mouse_genomes_project 4 126278317 126279060 + MGP_AJ_P0068101 Tmem234 protein_coding nonsense_mediated_decay MGP_AJ_T0068102.1 MGP_AJ_G0028790.1 mouse_genomes_project 4 126278593 126285106 + MGP_AJ_P0068102 Tmem234 protein_coding nonsense_mediated_decay MGP_AJ_T0068103.1 MGP_AJ_G0028790.1 mouse_genomes_project 4 126278593 126279541 + MGP_AJ_P0068103 Tmem234 protein_coding nonsense_mediated_decay MGP_AJ_T0068104.1 MGP_AJ_G0028790.1 mouse_genomes_project 4 126278698 126279361 + Tmem234 protein_coding retained_intron MGP_AJ_T0068105.1 MGP_AJ_G0028790.1 mouse_genomes_project 4 126278802 126279828 + Tmem234 protein_coding retained_intron MGP_AJ_T0068106.1 MGP_AJ_G0028790.1 mouse_genomes_project 4 126279621 126284743 + Tmem234 protein_coding retained_intron MGP_AJ_T0067391.1 MGP_AJ_G0028618.1 mouse_genomes_project 4 114286560 114300460 - MGP_AJ_P0067391 B4galt2 protein_coding nonsense_mediated_decay MGP_AJ_T0067398.1 MGP_AJ_G0028618.1 mouse_genomes_project 4 114290324 114300781 - MGP_AJ_P0067398 B4galt2 protein_coding nonsense_mediated_decay MGP_AJ_T0067399.1 MGP_AJ_G0028618.1 mouse_genomes_project 4 114290434 114300792 - MGP_AJ_P0067399 B4galt2 protein_coding protein_coding MGP_AJ_T0067400.1 MGP_AJ_G0028618.1 mouse_genomes_project 4 114290605 114300417 - MGP_AJ_P0067400 B4galt2 protein_coding protein_coding MGP_AJ_T0067402.1 MGP_AJ_G0028618.1 mouse_genomes_project 4 114294875 114300460 - MGP_AJ_P0067402 B4galt2 protein_coding protein_coding MGP_AJ_T0067403.1 MGP_AJ_G0028618.1 mouse_genomes_project 4 114298323 114300524 - B4galt2 protein_coding processed_transcript MGP_AJ_T0067404.1 MGP_AJ_G0028618.1 mouse_genomes_project 4 114298697 114299596 - MGP_AJ_P0067404 B4galt2 protein_coding protein_coding MGP_AJ_T0068196.1 MGP_AJ_G0028805.1 mouse_genomes_project 4 126901293 126902041 - Gm853 protein_coding processed_transcript MGP_AJ_T0068197.1 MGP_AJ_G0028805.1 mouse_genomes_project 4 126901293 126914726 - MGP_AJ_P0068197 Gm853 protein_coding protein_coding MGP_AJ_T0004489.1 MGP_AJ_G0003902.1 mouse_genomes_project 4 96436048 96488037 - Gm12682 antisense antisense MGP_AJ_T0004584.1 MGP_AJ_G0003976.1 mouse_genomes_project 4 141488316 141489750 + Pramef12os antisense antisense MGP_AJ_T0069521.1 MGP_AJ_G0029127.1 mouse_genomes_project 4 148557901 148569253 - MGP_AJ_P0069521 Vamp3 protein_coding protein_coding MGP_AJ_T0069522.1 MGP_AJ_G0029127.1 mouse_genomes_project 4 148561133 148569246 - Vamp3 protein_coding retained_intron MGP_AJ_T0069523.1 MGP_AJ_G0029127.1 mouse_genomes_project 4 148567209 148569263 - Vamp3 protein_coding retained_intron MGP_AJ_T0068653.1 MGP_AJ_G0028903.1 mouse_genomes_project 4 132064347 132106933 - MGP_AJ_P0068653 Nipal3 protein_coding nonsense_mediated_decay MGP_AJ_T0068654.1 MGP_AJ_G0028903.1 mouse_genomes_project 4 132065064 132106933 - MGP_AJ_P0068654 Nipal3 protein_coding protein_coding MGP_AJ_T0068655.1 MGP_AJ_G0028903.1 mouse_genomes_project 4 132067819 132107050 - MGP_AJ_P0068655 Nipal3 protein_coding protein_coding MGP_AJ_T0068656.1 MGP_AJ_G0028903.1 mouse_genomes_project 4 132070813 132086264 - MGP_AJ_P0068656 Nipal3 protein_coding protein_coding MGP_AJ_T0068657.1 MGP_AJ_G0028903.1 mouse_genomes_project 4 132071104 132073991 - Nipal3 protein_coding processed_transcript MGP_AJ_T0068658.1 MGP_AJ_G0028903.1 mouse_genomes_project 4 132071194 132074263 - Nipal3 protein_coding processed_transcript MGP_AJ_T0068659.1 MGP_AJ_G0028903.1 mouse_genomes_project 4 132091583 132107396 - MGP_AJ_P0068659 Nipal3 protein_coding protein_coding MGP_AJ_T0068660.1 MGP_AJ_G0028903.1 mouse_genomes_project 4 132094500 132107465 - MGP_AJ_P0068660 Nipal3 protein_coding protein_coding MGP_AJ_T0007899.1 MGP_AJ_G0006456.1 mouse_genomes_project 4 89311004 89334406 + Gm12637 lincRNA lincRNA MGP_AJ_T0014715.1 MGP_AJ_G0012810.1 mouse_genomes_project 4 108561473 108562466 - processed_pseudogene processed_pseudogene MGP_AJ_T0101244.1 MGP_AJ_G0039210.1 mouse_genomes_project 4 113565503 113565607 - Gm26330 snoRNA snoRNA MGP_AJ_T0064654.1 MGP_AJ_G0027995.1 mouse_genomes_project 4 3219495 3220802 - Tox protein_coding processed_transcript MGP_AJ_T0064655.1 MGP_AJ_G0027995.1 mouse_genomes_project 4 3219874 3533302 - MGP_AJ_P0064655 Tox protein_coding unknown_likely_coding MGP_AJ_T0064656.1 MGP_AJ_G0027995.1 mouse_genomes_project 4 3271695 3534081 - Tox protein_coding retained_intron MGP_AJ_T0064657.1 MGP_AJ_G0027995.1 mouse_genomes_project 4 3353668 3529811 - Tox protein_coding retained_intron MGP_AJ_T0014670.1 MGP_AJ_G0012765.1 mouse_genomes_project 4 95603192 95603612 + processed_pseudogene processed_pseudogene MGP_AJ_T0007888.1 MGP_AJ_G0006447.1 mouse_genomes_project 4 80735930 80738771 - 6030471H07Rik lincRNA lincRNA MGP_AJ_T0101229.1 MGP_AJ_G0039195.1 mouse_genomes_project 4 76018608 76018731 - Gm25836 snoRNA snoRNA MGP_AJ_T0099929.1 MGP_AJ_G0037895.1 mouse_genomes_project 4 83264420 83264494 + Gm26017 snRNA snRNA MGP_AJ_T0069884.1 MGP_AJ_G0029189.1 mouse_genomes_project 4 153353130 153358497 + MGP_AJ_P0069884 Tmem240 protein_coding protein_coding MGP_AJ_T0069885.1 MGP_AJ_G0029189.1 mouse_genomes_project 4 153353134 153358919 + Tmem240 protein_coding retained_intron MGP_AJ_T0069886.1 MGP_AJ_G0029189.1 mouse_genomes_project 4 153353204 153358919 + MGP_AJ_P0069886 Tmem240 protein_coding protein_coding MGP_AJ_T0066864.1 MGP_AJ_G0028511.1 mouse_genomes_project 4 104849079 104929008 - MGP_AJ_P0066864 Scp2 protein_coding protein_coding MGP_AJ_T0066865.1 MGP_AJ_G0028511.1 mouse_genomes_project 4 104852935 104857298 - Scp2 protein_coding processed_transcript MGP_AJ_T0066866.1 MGP_AJ_G0028511.1 mouse_genomes_project 4 104853045 104881722 - Scp2 protein_coding processed_transcript MGP_AJ_T0066867.1 MGP_AJ_G0028511.1 mouse_genomes_project 4 104853217 104881778 - MGP_AJ_P0066867 Scp2 protein_coding protein_coding MGP_AJ_T0066868.1 MGP_AJ_G0028511.1 mouse_genomes_project 4 104853516 104928952 - Scp2 protein_coding processed_transcript MGP_AJ_T0066869.1 MGP_AJ_G0028511.1 mouse_genomes_project 4 104897480 104928980 - MGP_AJ_P0066869 Scp2 protein_coding protein_coding MGP_AJ_T0066870.1 MGP_AJ_G0028511.1 mouse_genomes_project 4 104901474 104928871 - Scp2 protein_coding processed_transcript MGP_AJ_T0066871.1 MGP_AJ_G0028511.1 mouse_genomes_project 4 104901783 104960795 - Scp2 protein_coding processed_transcript MGP_AJ_T0066872.1 MGP_AJ_G0028511.1 mouse_genomes_project 4 104912751 104960799 - MGP_AJ_P0066872 Scp2 protein_coding protein_coding MGP_AJ_T0007913.1 MGP_AJ_G0006469.1 mouse_genomes_project 4 98102325 98150811 + 0610043K17Rik lincRNA lincRNA MGP_AJ_T0007915.1 MGP_AJ_G0006469.1 mouse_genomes_project 4 98116237 98142709 + 0610043K17Rik lincRNA lincRNA MGP_AJ_T0001415.1 MGP_AJ_G0001338.1 mouse_genomes_project 4 96149724 96159288 - TEC TEC MGP_AJ_T0068922.1 MGP_AJ_G0028971.1 mouse_genomes_project 4 135813336 135842626 - MGP_AJ_P0068922 Minos1 protein_coding protein_coding MGP_AJ_T0068923.1 MGP_AJ_G0028971.1 mouse_genomes_project 4 135815313 135817482 - Minos1 protein_coding processed_transcript MGP_AJ_T0068924.1 MGP_AJ_G0028971.1 mouse_genomes_project 4 135815345 135822766 - Minos1 protein_coding processed_transcript MGP_AJ_T0068925.1 MGP_AJ_G0028971.1 mouse_genomes_project 4 135815424 135842507 - Minos1 protein_coding processed_transcript MGP_AJ_T0007954.1 MGP_AJ_G0006498.1 mouse_genomes_project 4 121839223 121852469 + 1700041M05Rik lincRNA lincRNA MGP_AJ_T0065285.1 MGP_AJ_G0028151.1 mouse_genomes_project 4 39608262 39609989 + 1700022I11Rik protein_coding processed_transcript MGP_AJ_T0065286.1 MGP_AJ_G0028151.1 mouse_genomes_project 4 39608289 39609955 + MGP_AJ_P0065286 1700022I11Rik protein_coding protein_coding MGP_AJ_T0065287.1 MGP_AJ_G0028151.1 mouse_genomes_project 4 39608590 39610145 + MGP_AJ_P0065287 1700022I11Rik protein_coding protein_coding MGP_AJ_T0065288.1 MGP_AJ_G0028151.1 mouse_genomes_project 4 39608602 39622919 + MGP_AJ_P0065288 1700022I11Rik protein_coding nonsense_mediated_decay MGP_AJ_T0065289.1 MGP_AJ_G0028151.1 mouse_genomes_project 4 39608602 39612983 + MGP_AJ_P0065289 1700022I11Rik protein_coding protein_coding MGP_AJ_T0065581.1 MGP_AJ_G0028198.1 mouse_genomes_project 4 41772588 41775507 - MGP_AJ_P0065581 protein_coding protein_coding MGP_AJ_T0065582.1 MGP_AJ_G0028198.1 mouse_genomes_project 4 41772592 41775501 - MGP_AJ_P0065582 protein_coding protein_coding MGP_AJ_T0065583.1 MGP_AJ_G0028198.1 mouse_genomes_project 4 41772592 41775431 - MGP_AJ_P0065583 protein_coding protein_coding MGP_AJ_T0065584.1 MGP_AJ_G0028198.1 mouse_genomes_project 4 41772775 41775501 - MGP_AJ_P0065584 protein_coding protein_coding MGP_AJ_T0066531.1 MGP_AJ_G0028444.1 mouse_genomes_project 4 96429699 96432023 + MGP_AJ_P0066531 Foxd3 protein_coding protein_coding MGP_AJ_T0014432.1 MGP_AJ_G0012527.1 mouse_genomes_project 4 13577883 13578856 - processed_pseudogene processed_pseudogene MGP_AJ_T0010620.1 MGP_AJ_G0008742.1 mouse_genomes_project 4 126365061 126365133 - Mir7016 miRNA miRNA MGP_AJ_T0068538.1 MGP_AJ_G0028877.1 mouse_genomes_project 4 130835154 130837462 - MGP_AJ_P0068538 Zfp593 protein_coding protein_coding MGP_AJ_T0068539.1 MGP_AJ_G0028877.1 mouse_genomes_project 4 130835172 130837412 - Zfp593 protein_coding processed_transcript MGP_AJ_T0007835.1 MGP_AJ_G0006402.1 mouse_genomes_project 4 36928331 36970856 - 4933428C19Rik lincRNA lincRNA MGP_AJ_T0099906.1 MGP_AJ_G0037872.1 mouse_genomes_project 4 35727267 35727431 - Gm25581 snRNA snRNA MGP_AJ_T0066856.1 MGP_AJ_G0028510.1 mouse_genomes_project 4 104818688 104835999 - MGP_AJ_P0066856 Podn protein_coding protein_coding MGP_AJ_T0066857.1 MGP_AJ_G0028510.1 mouse_genomes_project 4 104818690 104828220 - MGP_AJ_P0066857 Podn protein_coding protein_coding MGP_AJ_T0066858.1 MGP_AJ_G0028510.1 mouse_genomes_project 4 104818694 104906874 - MGP_AJ_P0066858 Podn protein_coding protein_coding MGP_AJ_T0066859.1 MGP_AJ_G0028510.1 mouse_genomes_project 4 104818748 104835862 - MGP_AJ_P0066859 Podn protein_coding protein_coding MGP_AJ_T0066860.1 MGP_AJ_G0028510.1 mouse_genomes_project 4 104818751 104835863 - Podn protein_coding processed_transcript MGP_AJ_T0066861.1 MGP_AJ_G0028510.1 mouse_genomes_project 4 104821620 104825431 - MGP_AJ_P0066861 Podn protein_coding protein_coding MGP_AJ_T0066862.1 MGP_AJ_G0028510.1 mouse_genomes_project 4 104830927 104834895 - Podn protein_coding processed_transcript MGP_AJ_T0066863.1 MGP_AJ_G0028510.1 mouse_genomes_project 4 104831099 104836246 - Podn protein_coding processed_transcript MGP_AJ_T0067982.1 MGP_AJ_G0028768.1 mouse_genomes_project 4 125602629 125635937 - MGP_AJ_P0067982 Azin2 protein_coding protein_coding MGP_AJ_T0067983.1 MGP_AJ_G0028768.1 mouse_genomes_project 4 125604418 125635945 - MGP_AJ_P0067983 Azin2 protein_coding protein_coding MGP_AJ_T0067984.1 MGP_AJ_G0028768.1 mouse_genomes_project 4 125604418 125635956 - MGP_AJ_P0067984 Azin2 protein_coding protein_coding MGP_AJ_T0067985.1 MGP_AJ_G0028768.1 mouse_genomes_project 4 125619233 125635956 - Azin2 protein_coding retained_intron MGP_AJ_T0067986.1 MGP_AJ_G0028768.1 mouse_genomes_project 4 125619675 125634915 - MGP_AJ_P0067986 Azin2 protein_coding protein_coding MGP_AJ_T0067987.1 MGP_AJ_G0028768.1 mouse_genomes_project 4 125620773 125635959 - Azin2 protein_coding retained_intron MGP_AJ_T0067988.1 MGP_AJ_G0028768.1 mouse_genomes_project 4 125634221 125635945 - Azin2 protein_coding retained_intron MGP_AJ_T0010648.1 MGP_AJ_G0008770.1 mouse_genomes_project 4 147118128 147118192 - Mir7023 miRNA miRNA MGP_AJ_T0066942.1 MGP_AJ_G0028529.1 mouse_genomes_project 4 105811744 105873533 + MGP_AJ_P0066942 Nrd1 protein_coding protein_coding MGP_AJ_T0066943.1 MGP_AJ_G0028529.1 mouse_genomes_project 4 105811744 105873533 + MGP_AJ_P0066943 Nrd1 protein_coding protein_coding MGP_AJ_T0066944.1 MGP_AJ_G0028529.1 mouse_genomes_project 4 105811859 105872917 + MGP_AJ_P0066944 Nrd1 protein_coding protein_coding MGP_AJ_T0066945.1 MGP_AJ_G0028529.1 mouse_genomes_project 4 105828082 105856435 + MGP_AJ_P0066945 Nrd1 protein_coding protein_coding MGP_AJ_T0066946.1 MGP_AJ_G0028529.1 mouse_genomes_project 4 105835459 105843981 + Nrd1 protein_coding retained_intron MGP_AJ_T0066947.1 MGP_AJ_G0028529.1 mouse_genomes_project 4 105843675 105855196 + Nrd1 protein_coding retained_intron MGP_AJ_T0066948.1 MGP_AJ_G0028529.1 mouse_genomes_project 4 105851537 105855897 + Nrd1 protein_coding retained_intron MGP_AJ_T0066949.1 MGP_AJ_G0028529.1 mouse_genomes_project 4 105851982 105873231 + Nrd1 protein_coding processed_transcript MGP_AJ_T0066950.1 MGP_AJ_G0028529.1 mouse_genomes_project 4 105858097 105862680 + Nrd1 protein_coding processed_transcript MGP_AJ_T0066951.1 MGP_AJ_G0028529.1 mouse_genomes_project 4 105866700 105868623 + Nrd1 protein_coding retained_intron MGP_AJ_T0066952.1 MGP_AJ_G0028529.1 mouse_genomes_project 4 105870689 105871556 + Nrd1 protein_coding retained_intron MGP_AJ_T0066953.1 MGP_AJ_G0028529.1 mouse_genomes_project 4 105870746 105872436 + Nrd1 protein_coding retained_intron MGP_AJ_T0068365.1 MGP_AJ_G0028839.1 mouse_genomes_project 4 129347887 129365317 - MGP_AJ_P0068365 Themis2 protein_coding unknown_likely_coding MGP_AJ_T0068366.1 MGP_AJ_G0028839.1 mouse_genomes_project 4 129347887 129365351 - MGP_AJ_P0068366 Themis2 protein_coding protein_coding MGP_AJ_T0066414.1 MGP_AJ_G0028420.1 mouse_genomes_project 4 92283673 92655405 + MGP_AJ_P0066414 Fggy protein_coding protein_coding MGP_AJ_T0066415.1 MGP_AJ_G0028420.1 mouse_genomes_project 4 92283677 92570462 + Fggy protein_coding processed_transcript MGP_AJ_T0066416.1 MGP_AJ_G0028420.1 mouse_genomes_project 4 92283685 92655401 + Fggy protein_coding processed_transcript MGP_AJ_T0066417.1 MGP_AJ_G0028420.1 mouse_genomes_project 4 92283686 92322998 + MGP_AJ_P0066417 Fggy protein_coding protein_coding MGP_AJ_T0066418.1 MGP_AJ_G0028420.1 mouse_genomes_project 4 92305502 92552401 + MGP_AJ_P0066418 Fggy protein_coding protein_coding MGP_AJ_T0066419.1 MGP_AJ_G0028420.1 mouse_genomes_project 4 92305565 92326393 + Fggy protein_coding processed_transcript MGP_AJ_T0066420.1 MGP_AJ_G0028420.1 mouse_genomes_project 4 92305570 92323004 + MGP_AJ_P0066420 Fggy protein_coding protein_coding MGP_AJ_T0066421.1 MGP_AJ_G0028420.1 mouse_genomes_project 4 92305575 92496760 + MGP_AJ_P0066421 Fggy protein_coding protein_coding MGP_AJ_T0066422.1 MGP_AJ_G0028420.1 mouse_genomes_project 4 92311635 92539676 + MGP_AJ_P0066422 Fggy protein_coding nonsense_mediated_decay MGP_AJ_T0066423.1 MGP_AJ_G0028420.1 mouse_genomes_project 4 92311635 92655270 + MGP_AJ_P0066423 Fggy protein_coding protein_coding MGP_AJ_T0066424.1 MGP_AJ_G0028420.1 mouse_genomes_project 4 92313306 92466108 + Fggy protein_coding processed_transcript MGP_AJ_T0066425.1 MGP_AJ_G0028420.1 mouse_genomes_project 4 92350296 92606721 + Fggy protein_coding processed_transcript MGP_AJ_T0066426.1 MGP_AJ_G0028420.1 mouse_genomes_project 4 92350303 92466165 + MGP_AJ_P0066426 Fggy protein_coding nonsense_mediated_decay MGP_AJ_T0066427.1 MGP_AJ_G0028420.1 mouse_genomes_project 4 92364085 92552814 + Fggy protein_coding processed_transcript MGP_AJ_T0066428.1 MGP_AJ_G0028420.1 mouse_genomes_project 4 92465650 92496769 + Fggy protein_coding processed_transcript MGP_AJ_T0066429.1 MGP_AJ_G0028420.1 mouse_genomes_project 4 92496832 92655405 + MGP_AJ_P0066429 Fggy protein_coding protein_coding MGP_AJ_T0066430.1 MGP_AJ_G0028420.1 mouse_genomes_project 4 92552809 92655270 + MGP_AJ_P0066430 Fggy protein_coding protein_coding MGP_AJ_T0066431.1 MGP_AJ_G0028420.1 mouse_genomes_project 4 92579617 92655400 + MGP_AJ_P0066431 Fggy protein_coding nonsense_mediated_decay MGP_AJ_T0065077.1 MGP_AJ_G0028099.1 mouse_genomes_project 4 36646232 36650958 - Ddx58 protein_coding processed_transcript MGP_AJ_T0065078.1 MGP_AJ_G0028099.1 mouse_genomes_project 4 36646236 36662935 - Ddx58 protein_coding processed_transcript MGP_AJ_T0065079.1 MGP_AJ_G0028099.1 mouse_genomes_project 4 36647308 36682371 - MGP_AJ_P0065079 Ddx58 protein_coding protein_coding MGP_AJ_T0065080.1 MGP_AJ_G0028099.1 mouse_genomes_project 4 36650640 36651212 - Ddx58 protein_coding processed_transcript MGP_AJ_T0065081.1 MGP_AJ_G0028099.1 mouse_genomes_project 4 36651187 36656398 - Ddx58 protein_coding processed_transcript MGP_AJ_T0065082.1 MGP_AJ_G0028099.1 mouse_genomes_project 4 36651269 36682243 - MGP_AJ_P0065082 Ddx58 protein_coding protein_coding MGP_AJ_T0065083.1 MGP_AJ_G0028099.1 mouse_genomes_project 4 36665765 36682298 - Ddx58 protein_coding processed_transcript MGP_AJ_T0065084.1 MGP_AJ_G0028099.1 mouse_genomes_project 4 36666210 36682265 - Ddx58 protein_coding processed_transcript MGP_AJ_T0065085.1 MGP_AJ_G0028099.1 mouse_genomes_project 4 36668930 36670717 - Ddx58 protein_coding processed_transcript MGP_AJ_T0065086.1 MGP_AJ_G0028099.1 mouse_genomes_project 4 36669419 36682368 - Ddx58 protein_coding processed_transcript MGP_AJ_T0069235.1 MGP_AJ_G0029071.1 mouse_genomes_project 4 145230279 145254733 - MGP_AJ_P0069235 Zfp933 protein_coding protein_coding MGP_AJ_T0069236.1 MGP_AJ_G0029071.1 mouse_genomes_project 4 145235175 145254733 - MGP_AJ_P0069236 Zfp933 protein_coding protein_coding MGP_AJ_T0004588.1 MGP_AJ_G0003979.1 mouse_genomes_project 4 146018355 146019638 - Gm13209 antisense antisense MGP_AJ_T0018070.1 MGP_AJ_G0015539.1 mouse_genomes_project 4 94466248 94469446 - Gm12676 processed_transcript processed_transcript MGP_AJ_T0069327.1 MGP_AJ_G0029094.1 mouse_genomes_project 4 146048045 146062550 - MGP_AJ_P0069327 Tardbp protein_coding protein_coding MGP_AJ_T0069328.1 MGP_AJ_G0029094.1 mouse_genomes_project 4 146048045 146062527 - MGP_AJ_P0069328 Tardbp protein_coding protein_coding MGP_AJ_T0069329.1 MGP_AJ_G0029094.1 mouse_genomes_project 4 146048045 146062527 - MGP_AJ_P0069329 Tardbp protein_coding protein_coding MGP_AJ_T0069330.1 MGP_AJ_G0029094.1 mouse_genomes_project 4 146048045 146062527 - MGP_AJ_P0069330 Tardbp protein_coding protein_coding MGP_AJ_T0069331.1 MGP_AJ_G0029094.1 mouse_genomes_project 4 146048050 146062293 - MGP_AJ_P0069331 Tardbp protein_coding nonsense_mediated_decay MGP_AJ_T0069332.1 MGP_AJ_G0029094.1 mouse_genomes_project 4 146048051 146051804 - Tardbp protein_coding processed_transcript MGP_AJ_T0069333.1 MGP_AJ_G0029094.1 mouse_genomes_project 4 146048051 146054263 - MGP_AJ_P0069333 Tardbp protein_coding protein_coding MGP_AJ_T0069334.1 MGP_AJ_G0029094.1 mouse_genomes_project 4 146048148 146054772 - MGP_AJ_P0069334 Tardbp protein_coding nonsense_mediated_decay MGP_AJ_T0069335.1 MGP_AJ_G0029094.1 mouse_genomes_project 4 146051131 146053567 - Tardbp protein_coding processed_transcript MGP_AJ_T0069336.1 MGP_AJ_G0029094.1 mouse_genomes_project 4 146051275 146052634 - Tardbp protein_coding processed_transcript MGP_AJ_T0069337.1 MGP_AJ_G0029094.1 mouse_genomes_project 4 146051424 146053344 - Tardbp protein_coding processed_transcript MGP_AJ_T0069338.1 MGP_AJ_G0029094.1 mouse_genomes_project 4 146051584 146062296 - MGP_AJ_P0069338 Tardbp protein_coding nonsense_mediated_decay MGP_AJ_T0069339.1 MGP_AJ_G0029094.1 mouse_genomes_project 4 146052301 146053859 - MGP_AJ_P0069339 Tardbp protein_coding nonsense_mediated_decay MGP_AJ_T0069340.1 MGP_AJ_G0029094.1 mouse_genomes_project 4 146052381 146057498 - MGP_AJ_P0069340 Tardbp protein_coding nonsense_mediated_decay MGP_AJ_T0069341.1 MGP_AJ_G0029094.1 mouse_genomes_project 4 146052386 146056191 - MGP_AJ_P0069341 Tardbp protein_coding nonsense_mediated_decay MGP_AJ_T0069342.1 MGP_AJ_G0029094.1 mouse_genomes_project 4 146052390 146056186 - MGP_AJ_P0069342 Tardbp protein_coding nonsense_mediated_decay MGP_AJ_T0069343.1 MGP_AJ_G0029094.1 mouse_genomes_project 4 146052390 146062289 - MGP_AJ_P0069343 Tardbp protein_coding nonsense_mediated_decay MGP_AJ_T0069344.1 MGP_AJ_G0029094.1 mouse_genomes_project 4 146052391 146054846 - MGP_AJ_P0069344 Tardbp protein_coding nonsense_mediated_decay MGP_AJ_T0069345.1 MGP_AJ_G0029094.1 mouse_genomes_project 4 146052391 146062289 - MGP_AJ_P0069345 Tardbp protein_coding protein_coding MGP_AJ_T0069346.1 MGP_AJ_G0029094.1 mouse_genomes_project 4 146052528 146056113 - MGP_AJ_P0069346 Tardbp protein_coding protein_coding MGP_AJ_T0069347.1 MGP_AJ_G0029094.1 mouse_genomes_project 4 146052799 146054782 - MGP_AJ_P0069347 Tardbp protein_coding protein_coding MGP_AJ_T0069348.1 MGP_AJ_G0029094.1 mouse_genomes_project 4 146052942 146060897 - MGP_AJ_P0069348 Tardbp protein_coding protein_coding MGP_AJ_T0069349.1 MGP_AJ_G0029094.1 mouse_genomes_project 4 146053045 146060897 - MGP_AJ_P0069349 Tardbp protein_coding protein_coding MGP_AJ_T0069350.1 MGP_AJ_G0029094.1 mouse_genomes_project 4 146053045 146060897 - MGP_AJ_P0069350 Tardbp protein_coding protein_coding MGP_AJ_T0069351.1 MGP_AJ_G0029094.1 mouse_genomes_project 4 146053099 146057605 - MGP_AJ_P0069351 Tardbp protein_coding protein_coding MGP_AJ_T0069352.1 MGP_AJ_G0029094.1 mouse_genomes_project 4 146053526 146062301 - MGP_AJ_P0069352 Tardbp protein_coding nonsense_mediated_decay MGP_AJ_T0069353.1 MGP_AJ_G0029094.1 mouse_genomes_project 4 146054096 146062285 - MGP_AJ_P0069353 Tardbp protein_coding protein_coding MGP_AJ_T0069354.1 MGP_AJ_G0029094.1 mouse_genomes_project 4 146056188 146061857 - MGP_AJ_P0069354 Tardbp protein_coding protein_coding MGP_AJ_T0069355.1 MGP_AJ_G0029094.1 mouse_genomes_project 4 146060619 146062289 - Tardbp protein_coding retained_intron MGP_AJ_T0014768.1 MGP_AJ_G0012863.1 mouse_genomes_project 4 123228283 123228584 - processed_pseudogene processed_pseudogene MGP_AJ_T0069976.1 MGP_AJ_G0029207.1 mouse_genomes_project 4 153603013 153620106 + MGP_AJ_P0069976 Sdf4 protein_coding protein_coding MGP_AJ_T0069977.1 MGP_AJ_G0029207.1 mouse_genomes_project 4 153603052 153623467 + MGP_AJ_P0069977 Sdf4 protein_coding protein_coding MGP_AJ_T0069978.1 MGP_AJ_G0029207.1 mouse_genomes_project 4 153603311 153612795 + MGP_AJ_P0069978 Sdf4 protein_coding protein_coding MGP_AJ_T0069979.1 MGP_AJ_G0029207.1 mouse_genomes_project 4 153603518 153620214 + MGP_AJ_P0069979 Sdf4 protein_coding protein_coding MGP_AJ_T0069980.1 MGP_AJ_G0029207.1 mouse_genomes_project 4 153610158 153611696 + Sdf4 protein_coding retained_intron MGP_AJ_T0069981.1 MGP_AJ_G0029207.1 mouse_genomes_project 4 153618405 153619753 + Sdf4 protein_coding retained_intron MGP_AJ_T0066559.1 MGP_AJ_G0028453.1 mouse_genomes_project 4 97818166 97897716 + MGP_AJ_P0066559 Raver2 protein_coding protein_coding MGP_AJ_T0066560.1 MGP_AJ_G0028453.1 mouse_genomes_project 4 97818166 97880704 + MGP_AJ_P0066560 Raver2 protein_coding protein_coding MGP_AJ_T0066561.1 MGP_AJ_G0028453.1 mouse_genomes_project 4 97818662 97853100 + Raver2 protein_coding processed_transcript MGP_AJ_T0067160.1 MGP_AJ_G0028575.1 mouse_genomes_project 4 112360670 112410547 - Faah protein_coding retained_intron MGP_AJ_T0067161.1 MGP_AJ_G0028575.1 mouse_genomes_project 4 112390090 112410588 - Faah protein_coding retained_intron MGP_AJ_T0067162.1 MGP_AJ_G0028575.1 mouse_genomes_project 4 112390090 112410798 - MGP_AJ_P0067162 Faah protein_coding protein_coding MGP_AJ_T0067163.1 MGP_AJ_G0028575.1 mouse_genomes_project 4 112391614 112410599 - Faah protein_coding retained_intron MGP_AJ_T0067164.1 MGP_AJ_G0028575.1 mouse_genomes_project 4 112391727 112393490 - Faah protein_coding retained_intron MGP_AJ_T0067165.1 MGP_AJ_G0028575.1 mouse_genomes_project 4 112392135 112393359 - Faah protein_coding retained_intron MGP_AJ_T0067166.1 MGP_AJ_G0028575.1 mouse_genomes_project 4 112395146 112410547 - Faah protein_coding processed_transcript MGP_AJ_T0067167.1 MGP_AJ_G0028575.1 mouse_genomes_project 4 112399151 112410569 - Faah protein_coding processed_transcript MGP_AJ_T0065877.1 MGP_AJ_G0028278.1 mouse_genomes_project 4 54221015 54365717 + MGP_AJ_P0065877 protein_coding unknown_likely_coding MGP_AJ_T0065879.1 MGP_AJ_G0028278.1 mouse_genomes_project 4 54221451 54365759 + MGP_AJ_P0065879 protein_coding nonsense_mediated_decay MGP_AJ_T0065882.1 MGP_AJ_G0028278.1 mouse_genomes_project 4 54293727 54365019 + protein_coding retained_intron MGP_AJ_T0069822.1 MGP_AJ_G0029178.1 mouse_genomes_project 4 153026011 153032775 + protein_coding retained_intron MGP_AJ_T0069823.1 MGP_AJ_G0029178.1 mouse_genomes_project 4 153026079 153061658 + protein_coding processed_transcript MGP_AJ_T0069824.1 MGP_AJ_G0029178.1 mouse_genomes_project 4 153026079 153038454 + MGP_AJ_P0069824 protein_coding protein_coding MGP_AJ_T0069825.1 MGP_AJ_G0029178.1 mouse_genomes_project 4 153026079 153086206 + MGP_AJ_P0069825 protein_coding protein_coding MGP_AJ_T0069826.1 MGP_AJ_G0029178.1 mouse_genomes_project 4 153038402 153066663 + protein_coding retained_intron MGP_AJ_T0069827.1 MGP_AJ_G0029178.1 mouse_genomes_project 4 153038749 153085788 + MGP_AJ_P0069827 protein_coding protein_coding MGP_AJ_T0069828.1 MGP_AJ_G0029178.1 mouse_genomes_project 4 153046329 153066496 + protein_coding processed_transcript MGP_AJ_T0069829.1 MGP_AJ_G0029178.1 mouse_genomes_project 4 153071006 153085788 + protein_coding retained_intron MGP_AJ_T0069830.1 MGP_AJ_G0029178.1 mouse_genomes_project 4 153081272 153085913 + protein_coding retained_intron MGP_AJ_T0069831.1 MGP_AJ_G0029178.1 mouse_genomes_project 4 153081319 153085863 + protein_coding retained_intron MGP_AJ_T0014542.1 MGP_AJ_G0012637.1 mouse_genomes_project 4 47867312 47867669 + processed_pseudogene processed_pseudogene MGP_AJ_T0007802.1 MGP_AJ_G0006374.1 mouse_genomes_project 4 5743021 5745614 - Gm26548 lincRNA lincRNA MGP_AJ_T0011585.1 MGP_AJ_G0009707.1 mouse_genomes_project 4 129739920 129740208 - Gm24636 misc_RNA misc_RNA MGP_AJ_T0008039.1 MGP_AJ_G0006561.1 mouse_genomes_project 4 152256420 152257039 - Gm27202 lincRNA lincRNA MGP_AJ_T0004440.1 MGP_AJ_G0003866.1 mouse_genomes_project 4 37961833 37963326 + Fam219aos antisense antisense MGP_AJ_T0065090.1 MGP_AJ_G0028102.1 mouse_genomes_project 4 36917740 36922674 + MGP_AJ_P0065090 Tmem215 protein_coding protein_coding MGP_AJ_T0065091.1 MGP_AJ_G0028102.1 mouse_genomes_project 4 36918691 36921166 + MGP_AJ_P0065091 Tmem215 protein_coding protein_coding MGP_AJ_T0065116.1 MGP_AJ_G0028108.1 mouse_genomes_project 4 37380124 37392009 - MGP_AJ_P0065116 Bag1 protein_coding protein_coding MGP_AJ_T0065117.1 MGP_AJ_G0028108.1 mouse_genomes_project 4 37380125 37392022 - MGP_AJ_P0065117 Bag1 protein_coding protein_coding MGP_AJ_T0065118.1 MGP_AJ_G0028108.1 mouse_genomes_project 4 37380127 37391971 - MGP_AJ_P0065118 Bag1 protein_coding protein_coding MGP_AJ_T0067535.1 MGP_AJ_G0028654.1 mouse_genomes_project 4 115708896 115713298 + MGP_AJ_P0067535 Cldn19 protein_coding protein_coding MGP_AJ_T0067536.1 MGP_AJ_G0028654.1 mouse_genomes_project 4 115708991 115715858 + MGP_AJ_P0067536 Cldn19 protein_coding protein_coding MGP_AJ_T0004540.1 MGP_AJ_G0003942.1 mouse_genomes_project 4 124931219 124933170 + Hmgb4os antisense antisense MGP_AJ_T0018035.1 MGP_AJ_G0015514.1 mouse_genomes_project 4 21434752 21734678 + processed_transcript processed_transcript MGP_AJ_T0014552.1 MGP_AJ_G0012647.1 mouse_genomes_project 4 49532147 49534923 + processed_pseudogene processed_pseudogene MGP_AJ_T0001422.1 MGP_AJ_G0001344.1 mouse_genomes_project 4 120863585 120864865 - TEC TEC MGP_AJ_T0068328.1 MGP_AJ_G0028832.1 mouse_genomes_project 4 129093317 129096236 - MGP_AJ_P0068328 Atpif1 protein_coding protein_coding MGP_AJ_T0068329.1 MGP_AJ_G0028832.1 mouse_genomes_project 4 129093317 129096407 - MGP_AJ_P0068329 Atpif1 protein_coding protein_coding MGP_AJ_T0068330.1 MGP_AJ_G0028832.1 mouse_genomes_project 4 129095235 129096343 - Atpif1 protein_coding retained_intron MGP_AJ_T0101180.1 MGP_AJ_G0039146.1 mouse_genomes_project 4 97924 98051 + Gm22541 snoRNA snoRNA MGP_AJ_T0069887.1 MGP_AJ_G0029190.1 mouse_genomes_project 4 153358995 153379220 - MGP_AJ_P0069887 Atad3a protein_coding protein_coding MGP_AJ_T0069888.1 MGP_AJ_G0029190.1 mouse_genomes_project 4 153359188 153364705 - Atad3a protein_coding retained_intron MGP_AJ_T0069889.1 MGP_AJ_G0029190.1 mouse_genomes_project 4 153364427 153367685 - Atad3a protein_coding retained_intron MGP_AJ_T0069890.1 MGP_AJ_G0029190.1 mouse_genomes_project 4 153365561 153367553 - Atad3a protein_coding retained_intron MGP_AJ_T0069891.1 MGP_AJ_G0029190.1 mouse_genomes_project 4 153368577 153374210 - MGP_AJ_P0069891 Atad3a protein_coding nonsense_mediated_decay MGP_AJ_T0069892.1 MGP_AJ_G0029190.1 mouse_genomes_project 4 153368879 153372901 - MGP_AJ_P0069892 Atad3a protein_coding nonsense_mediated_decay MGP_AJ_T0069893.1 MGP_AJ_G0029190.1 mouse_genomes_project 4 153369859 153379055 - MGP_AJ_P0069893 Atad3a protein_coding nonsense_mediated_decay MGP_AJ_T0069894.1 MGP_AJ_G0029190.1 mouse_genomes_project 4 153371749 153379195 - MGP_AJ_P0069894 Atad3a protein_coding nonsense_mediated_decay MGP_AJ_T0069895.1 MGP_AJ_G0029190.1 mouse_genomes_project 4 153373971 153379214 - Atad3a protein_coding retained_intron MGP_AJ_T0014535.1 MGP_AJ_G0012630.1 mouse_genomes_project 4 45362450 45362815 + processed_pseudogene processed_pseudogene MGP_AJ_T0014638.1 MGP_AJ_G0012733.1 mouse_genomes_project 4 83624763 83625547 - processed_pseudogene processed_pseudogene MGP_AJ_T0014792.1 MGP_AJ_G0012887.1 mouse_genomes_project 4 131922065 131922255 - processed_pseudogene processed_pseudogene MGP_AJ_T0066886.1 MGP_AJ_G0028513.1 mouse_genomes_project 4 104988582 105024505 - MGP_AJ_P0066886 Zyg11a protein_coding protein_coding MGP_AJ_T0066887.1 MGP_AJ_G0028513.1 mouse_genomes_project 4 104988582 105024480 - MGP_AJ_P0066887 Zyg11a protein_coding protein_coding MGP_AJ_T0069470.1 MGP_AJ_G0029118.1 mouse_genomes_project 4 147720594 147728272 + MGP_AJ_P0069470 Eno1 protein_coding protein_coding MGP_AJ_T0069471.1 MGP_AJ_G0029118.1 mouse_genomes_project 4 147720825 147733337 + MGP_AJ_P0069471 Eno1 protein_coding protein_coding MGP_AJ_T0069472.1 MGP_AJ_G0029118.1 mouse_genomes_project 4 147721113 147726711 + Eno1 protein_coding retained_intron MGP_AJ_T0069473.1 MGP_AJ_G0029118.1 mouse_genomes_project 4 147721113 147729522 + MGP_AJ_P0069473 Eno1 protein_coding protein_coding MGP_AJ_T0069474.1 MGP_AJ_G0029118.1 mouse_genomes_project 4 147721116 147723942 + Eno1 protein_coding retained_intron MGP_AJ_T0069475.1 MGP_AJ_G0029118.1 mouse_genomes_project 4 147721578 147726126 + MGP_AJ_P0069475 Eno1 protein_coding protein_coding MGP_AJ_T0069476.1 MGP_AJ_G0029118.1 mouse_genomes_project 4 147727468 147733331 + MGP_AJ_P0069476 Eno1 protein_coding protein_coding MGP_AJ_T0069477.1 MGP_AJ_G0029118.1 mouse_genomes_project 4 147728217 147731012 + Eno1 protein_coding retained_intron MGP_AJ_T0069478.1 MGP_AJ_G0029118.1 mouse_genomes_project 4 147730538 147731728 + Eno1 protein_coding retained_intron MGP_AJ_T0069479.1 MGP_AJ_G0029118.1 mouse_genomes_project 4 147731579 147732742 + Eno1 protein_coding retained_intron MGP_AJ_T0069480.1 MGP_AJ_G0029118.1 mouse_genomes_project 4 147731735 147733164 + Eno1 protein_coding retained_intron MGP_AJ_T0018032.1 MGP_AJ_G0015513.1 mouse_genomes_project 4 21429029 21434852 - C230012O17Rik processed_transcript processed_transcript MGP_AJ_T0018033.1 MGP_AJ_G0015513.1 mouse_genomes_project 4 21430565 21435319 - C230012O17Rik processed_transcript processed_transcript MGP_AJ_T0018034.1 MGP_AJ_G0015513.1 mouse_genomes_project 4 21434607 21435685 - C230012O17Rik processed_transcript processed_transcript MGP_AJ_T0014642.1 MGP_AJ_G0012737.1 mouse_genomes_project 4 85385362 85385998 - processed_pseudogene processed_pseudogene MGP_AJ_T0067465.1 MGP_AJ_G0028630.1 mouse_genomes_project 4 114863752 114879245 - MGP_AJ_P0067465 Mpl protein_coding protein_coding MGP_AJ_T0067466.1 MGP_AJ_G0028630.1 mouse_genomes_project 4 114863754 114879227 - MGP_AJ_P0067466 Mpl protein_coding protein_coding MGP_AJ_T0067467.1 MGP_AJ_G0028630.1 mouse_genomes_project 4 114864609 114879189 - MGP_AJ_P0067467 Mpl protein_coding protein_coding MGP_AJ_T0067468.1 MGP_AJ_G0028630.1 mouse_genomes_project 4 114864766 114879182 - MGP_AJ_P0067468 Mpl protein_coding protein_coding MGP_AJ_T0065667.1 MGP_AJ_G0028219.1 mouse_genomes_project 4 43168919 43204621 - MGP_AJ_P0065667 Trim14 protein_coding nonsense_mediated_decay MGP_AJ_T0065668.1 MGP_AJ_G0028219.1 mouse_genomes_project 4 43169957 43202913 - Trim14 protein_coding processed_transcript MGP_AJ_T0065669.1 MGP_AJ_G0028219.1 mouse_genomes_project 4 43181988 43204640 - MGP_AJ_P0065669 Trim14 protein_coding protein_coding MGP_AJ_T0065670.1 MGP_AJ_G0028219.1 mouse_genomes_project 4 43182529 43202941 - Trim14 protein_coding processed_transcript MGP_AJ_T0065671.1 MGP_AJ_G0028219.1 mouse_genomes_project 4 43184820 43204613 - MGP_AJ_P0065671 Trim14 protein_coding protein_coding MGP_AJ_T0065672.1 MGP_AJ_G0028219.1 mouse_genomes_project 4 43192207 43203103 - Trim14 protein_coding processed_transcript MGP_AJ_T0064635.1 MGP_AJ_G0027993.1 mouse_genomes_project 4 2893569 2924016 + MGP_AJ_P0064635 Sdcbp protein_coding protein_coding MGP_AJ_T0064636.1 MGP_AJ_G0027993.1 mouse_genomes_project 4 2893596 2923387 + MGP_AJ_P0064636 Sdcbp protein_coding protein_coding MGP_AJ_T0064637.1 MGP_AJ_G0027993.1 mouse_genomes_project 4 2893627 2902039 + Sdcbp protein_coding processed_transcript MGP_AJ_T0064638.1 MGP_AJ_G0027993.1 mouse_genomes_project 4 2893628 2920844 + MGP_AJ_P0064638 Sdcbp protein_coding protein_coding MGP_AJ_T0064639.1 MGP_AJ_G0027993.1 mouse_genomes_project 4 2893631 2911960 + Sdcbp protein_coding processed_transcript MGP_AJ_T0064640.1 MGP_AJ_G0027993.1 mouse_genomes_project 4 2893632 2936899 + MGP_AJ_P0064640 Sdcbp protein_coding protein_coding MGP_AJ_T0064641.1 MGP_AJ_G0027993.1 mouse_genomes_project 4 2893632 2912795 + MGP_AJ_P0064641 Sdcbp protein_coding protein_coding MGP_AJ_T0064642.1 MGP_AJ_G0027993.1 mouse_genomes_project 4 2904750 2920728 + MGP_AJ_P0064642 Sdcbp protein_coding protein_coding MGP_AJ_T0066558.1 MGP_AJ_G0028452.1 mouse_genomes_project 4 97772453 97772852 - MGP_AJ_P0066558 Gm10577 protein_coding protein_coding MGP_AJ_T0069896.1 MGP_AJ_G0029191.1 mouse_genomes_project 4 153386121 153392670 - MGP_AJ_P0069896 Vwa1 protein_coding protein_coding MGP_AJ_T0014620.1 MGP_AJ_G0012715.1 mouse_genomes_project 4 76768419 76773099 + processed_pseudogene processed_pseudogene MGP_AJ_T0068396.1 MGP_AJ_G0028846.1 mouse_genomes_project 4 129778566 129781084 - MGP_AJ_P0068396 Gpr3 protein_coding protein_coding MGP_AJ_T0068397.1 MGP_AJ_G0028846.1 mouse_genomes_project 4 129779593 129781762 - MGP_AJ_P0068397 Gpr3 protein_coding protein_coding MGP_AJ_T0068398.1 MGP_AJ_G0028846.1 mouse_genomes_project 4 129780296 129781540 - MGP_AJ_P0068398 Gpr3 protein_coding protein_coding MGP_AJ_T0064743.1 MGP_AJ_G0028010.1 mouse_genomes_project 4 8024219 8089159 + MGP_AJ_P0064743 1110037F02Rik protein_coding protein_coding MGP_AJ_T0064744.1 MGP_AJ_G0028010.1 mouse_genomes_project 4 8024219 8066657 + MGP_AJ_P0064744 1110037F02Rik protein_coding protein_coding MGP_AJ_T0064745.1 MGP_AJ_G0028010.1 mouse_genomes_project 4 8024304 8089159 + MGP_AJ_P0064745 1110037F02Rik protein_coding protein_coding MGP_AJ_T0018081.1 MGP_AJ_G0015546.1 mouse_genomes_project 4 112987994 112996516 - C530005A16Rik processed_transcript processed_transcript MGP_AJ_T0067717.1 MGP_AJ_G0028701.1 mouse_genomes_project 4 120304140 120307752 - MGP_AJ_P0067717 Ndufs5 protein_coding protein_coding MGP_AJ_T0067718.1 MGP_AJ_G0028701.1 mouse_genomes_project 4 120304140 120310389 - MGP_AJ_P0067718 Ndufs5 protein_coding protein_coding MGP_AJ_T0067719.1 MGP_AJ_G0028701.1 mouse_genomes_project 4 120304140 120310373 - MGP_AJ_P0067719 Ndufs5 protein_coding protein_coding MGP_AJ_T0067720.1 MGP_AJ_G0028701.1 mouse_genomes_project 4 120304299 120310368 - MGP_AJ_P0067720 Ndufs5 protein_coding protein_coding MGP_AJ_T0068777.1 MGP_AJ_G0028935.1 mouse_genomes_project 4 133588476 133615884 - MGP_AJ_P0068777 Epha8 protein_coding protein_coding MGP_AJ_T0014539.1 MGP_AJ_G0012634.1 mouse_genomes_project 4 46049181 46050187 + processed_pseudogene processed_pseudogene MGP_AJ_T0065893.1 MGP_AJ_G0028284.1 mouse_genomes_project 4 54701565 54868292 - MGP_AJ_P0065893 Svep1 protein_coding protein_coding MGP_AJ_T0065894.1 MGP_AJ_G0028284.1 mouse_genomes_project 4 54803221 54868308 - Svep1 protein_coding processed_transcript MGP_AJ_T0065895.1 MGP_AJ_G0028284.1 mouse_genomes_project 4 54804582 54868555 - Svep1 protein_coding processed_transcript MGP_AJ_T0065896.1 MGP_AJ_G0028284.1 mouse_genomes_project 4 54838283 54868384 - Svep1 protein_coding processed_transcript MGP_AJ_T0008024.1 MGP_AJ_G0006546.1 mouse_genomes_project 4 138658663 138659990 + Gm29367 lincRNA lincRNA MGP_AJ_T0004459.1 MGP_AJ_G0003882.1 mouse_genomes_project 4 50204832 50206547 - 1700060J05Rik antisense antisense MGP_AJ_T0004557.1 MGP_AJ_G0003956.1 mouse_genomes_project 4 132636409 132636801 - Gm24362 antisense antisense MGP_AJ_T0067493.1 MGP_AJ_G0028644.1 mouse_genomes_project 4 115312034 115315114 + MGP_AJ_P0067493 Olfr1335 protein_coding protein_coding MGP_AJ_T0067494.1 MGP_AJ_G0028644.1 mouse_genomes_project 4 115313719 115314831 + MGP_AJ_P0067494 Olfr1335 protein_coding protein_coding MGP_AJ_T0098452.1 MGP_AJ_G0036436.1 mouse_genomes_project 4 138319846 138321550 + pseudogene pseudogene MGP_AJ_T0065967.1 MGP_AJ_G0028302.1 mouse_genomes_project 4 56567322 56577243 - MGP_AJ_P0065967 Slc46a2 protein_coding protein_coding MGP_AJ_T0068872.1 MGP_AJ_G0028952.1 mouse_genomes_project 4 135005638 135013446 + MGP_AJ_P0068872 Ddost protein_coding protein_coding MGP_AJ_T0007803.1 MGP_AJ_G0006375.1 mouse_genomes_project 4 6979576 7251593 - lincRNA lincRNA MGP_AJ_T0007804.1 MGP_AJ_G0006375.1 mouse_genomes_project 4 7000799 7312782 - lincRNA lincRNA MGP_AJ_T0007805.1 MGP_AJ_G0006375.1 mouse_genomes_project 4 7254402 7312766 - lincRNA lincRNA MGP_AJ_T0007806.1 MGP_AJ_G0006375.1 mouse_genomes_project 4 7254678 7312769 - lincRNA lincRNA MGP_AJ_T0065633.1 MGP_AJ_G0028210.1 mouse_genomes_project 4 42712121 42788739 + MGP_AJ_P0065633 Tmod1 protein_coding protein_coding MGP_AJ_T0065634.1 MGP_AJ_G0028210.1 mouse_genomes_project 4 42712395 42763512 + MGP_AJ_P0065634 Tmod1 protein_coding protein_coding MGP_AJ_T0065635.1 MGP_AJ_G0028210.1 mouse_genomes_project 4 42750097 42772375 + Tmod1 protein_coding processed_transcript MGP_AJ_T0065636.1 MGP_AJ_G0028210.1 mouse_genomes_project 4 42755548 42763496 + Tmod1 protein_coding processed_transcript MGP_AJ_T0065637.1 MGP_AJ_G0028210.1 mouse_genomes_project 4 42772909 42787150 + Tmod1 protein_coding processed_transcript MGP_AJ_T0004439.1 MGP_AJ_G0003865.1 mouse_genomes_project 4 36712657 36714004 + antisense antisense MGP_AJ_T0067506.1 MGP_AJ_G0028649.1 mouse_genomes_project 4 115628924 115643467 - MGP_AJ_P0067506 Ermap protein_coding protein_coding MGP_AJ_T0067507.1 MGP_AJ_G0028649.1 mouse_genomes_project 4 115629058 115643432 - MGP_AJ_P0067507 Ermap protein_coding nonsense_mediated_decay MGP_AJ_T0067508.1 MGP_AJ_G0028649.1 mouse_genomes_project 4 115631013 115643432 - Ermap protein_coding retained_intron MGP_AJ_T0067509.1 MGP_AJ_G0028649.1 mouse_genomes_project 4 115632021 115643412 - Ermap protein_coding processed_transcript MGP_AJ_T0067510.1 MGP_AJ_G0028649.1 mouse_genomes_project 4 115639162 115642207 - MGP_AJ_P0067510 Ermap protein_coding protein_coding MGP_AJ_T0067511.1 MGP_AJ_G0028649.1 mouse_genomes_project 4 115639223 115643407 - MGP_AJ_P0067511 Ermap protein_coding protein_coding MGP_AJ_T0067512.1 MGP_AJ_G0028649.1 mouse_genomes_project 4 115640654 115643452 - MGP_AJ_P0067512 Ermap protein_coding nonsense_mediated_decay MGP_AJ_T0067513.1 MGP_AJ_G0028649.1 mouse_genomes_project 4 115640787 115643449 - MGP_AJ_P0067513 Ermap protein_coding nonsense_mediated_decay MGP_AJ_T0067514.1 MGP_AJ_G0028649.1 mouse_genomes_project 4 115640795 115643467 - MGP_AJ_P0067514 Ermap protein_coding protein_coding MGP_AJ_T0018066.1 MGP_AJ_G0015536.1 mouse_genomes_project 4 92198767 92224037 - Gm830 processed_transcript processed_transcript MGP_AJ_T0010631.1 MGP_AJ_G0008753.1 mouse_genomes_project 4 132034777 132034856 - Mir700 miRNA miRNA MGP_AJ_T0067131.1 MGP_AJ_G0028568.1 mouse_genomes_project 4 112170388 112171573 - MGP_AJ_P0067131 Tex38 protein_coding protein_coding MGP_AJ_T0064660.1 MGP_AJ_G0027998.1 mouse_genomes_project 4 5164480 5232198 + Chd7 protein_coding retained_intron MGP_AJ_T0064661.1 MGP_AJ_G0027998.1 mouse_genomes_project 4 5164544 5262465 + MGP_AJ_P0064661 Chd7 protein_coding protein_coding MGP_AJ_T0064662.1 MGP_AJ_G0027998.1 mouse_genomes_project 4 5164995 5344203 + MGP_AJ_P0064662 Chd7 protein_coding protein_coding MGP_AJ_T0064663.1 MGP_AJ_G0027998.1 mouse_genomes_project 4 5165439 5345051 + MGP_AJ_P0064663 Chd7 protein_coding protein_coding MGP_AJ_T0064664.1 MGP_AJ_G0027998.1 mouse_genomes_project 4 5184445 5226946 + MGP_AJ_P0064664 Chd7 protein_coding protein_coding MGP_AJ_T0064665.1 MGP_AJ_G0027998.1 mouse_genomes_project 4 5226821 5344618 + MGP_AJ_P0064665 Chd7 protein_coding protein_coding MGP_AJ_T0064666.1 MGP_AJ_G0027998.1 mouse_genomes_project 4 5226888 5344047 + MGP_AJ_P0064666 Chd7 protein_coding unknown_likely_coding MGP_AJ_T0064667.1 MGP_AJ_G0027998.1 mouse_genomes_project 4 5317709 5322106 + Chd7 protein_coding processed_transcript MGP_AJ_T0101208.1 MGP_AJ_G0039174.1 mouse_genomes_project 4 46997647 46997779 + Gm25485 snoRNA snoRNA MGP_AJ_T0069011.1 MGP_AJ_G0028993.1 mouse_genomes_project 4 137746678 137766032 + MGP_AJ_P0069011 Atp13a2 protein_coding protein_coding MGP_AJ_T0069012.1 MGP_AJ_G0028993.1 mouse_genomes_project 4 137746705 137768275 + Atp13a2 protein_coding retained_intron MGP_AJ_T0069013.1 MGP_AJ_G0028993.1 mouse_genomes_project 4 137746795 137757973 + Atp13a2 protein_coding retained_intron MGP_AJ_T0069014.1 MGP_AJ_G0028993.1 mouse_genomes_project 4 137746872 137768281 + MGP_AJ_P0069014 Atp13a2 protein_coding protein_coding MGP_AJ_T0069015.1 MGP_AJ_G0028993.1 mouse_genomes_project 4 137755407 137762879 + Atp13a2 protein_coding processed_transcript MGP_AJ_T0069016.1 MGP_AJ_G0028993.1 mouse_genomes_project 4 137756017 137761818 + Atp13a2 protein_coding processed_transcript MGP_AJ_T0069017.1 MGP_AJ_G0028993.1 mouse_genomes_project 4 137761655 137763035 + Atp13a2 protein_coding processed_transcript MGP_AJ_T0069018.1 MGP_AJ_G0028993.1 mouse_genomes_project 4 137765361 137767668 + Atp13a2 protein_coding retained_intron MGP_AJ_T0064956.1 MGP_AJ_G0028069.1 mouse_genomes_project 4 29020708 29036854 + Casp8ap2 protein_coding processed_transcript MGP_AJ_T0064957.1 MGP_AJ_G0028069.1 mouse_genomes_project 4 29020727 29044610 + Casp8ap2 protein_coding processed_transcript MGP_AJ_T0064958.1 MGP_AJ_G0028069.1 mouse_genomes_project 4 29020730 29058396 + MGP_AJ_P0064958 Casp8ap2 protein_coding protein_coding MGP_AJ_T0064959.1 MGP_AJ_G0028069.1 mouse_genomes_project 4 29020735 29058396 + MGP_AJ_P0064959 Casp8ap2 protein_coding protein_coding MGP_AJ_T0064960.1 MGP_AJ_G0028069.1 mouse_genomes_project 4 29029313 29058396 + MGP_AJ_P0064960 Casp8ap2 protein_coding protein_coding MGP_AJ_T0014774.1 MGP_AJ_G0012869.1 mouse_genomes_project 4 124068083 124068503 - processed_pseudogene processed_pseudogene MGP_AJ_T0068285.1 MGP_AJ_G0028822.1 mouse_genomes_project 4 128659044 128693208 - MGP_AJ_P0068285 Oprd1 protein_coding protein_coding MGP_AJ_T0099974.1 MGP_AJ_G0037940.1 mouse_genomes_project 4 137670127 137670243 + Gm26226 snRNA snRNA MGP_AJ_T0004513.1 MGP_AJ_G0003920.1 mouse_genomes_project 4 113225672 113231560 + Gm12996 antisense antisense MGP_AJ_T0065040.1 MGP_AJ_G0028090.1 mouse_genomes_project 4 31196902 31206614 - MGP_AJ_P0065040 Smim8 protein_coding protein_coding MGP_AJ_T0065041.1 MGP_AJ_G0028090.1 mouse_genomes_project 4 31196902 31206629 - MGP_AJ_P0065041 Smim8 protein_coding protein_coding MGP_AJ_T0065042.1 MGP_AJ_G0028090.1 mouse_genomes_project 4 31196902 31206736 - MGP_AJ_P0065042 Smim8 protein_coding protein_coding MGP_AJ_T0065043.1 MGP_AJ_G0028090.1 mouse_genomes_project 4 31196902 31206602 - MGP_AJ_P0065043 Smim8 protein_coding protein_coding MGP_AJ_T0065044.1 MGP_AJ_G0028090.1 mouse_genomes_project 4 31196902 31206535 - MGP_AJ_P0065044 Smim8 protein_coding protein_coding MGP_AJ_T0065045.1 MGP_AJ_G0028090.1 mouse_genomes_project 4 31196913 31206596 - Smim8 protein_coding processed_transcript MGP_AJ_T0065046.1 MGP_AJ_G0028090.1 mouse_genomes_project 4 31199126 31206620 - Smim8 protein_coding retained_intron MGP_AJ_T0065047.1 MGP_AJ_G0028090.1 mouse_genomes_project 4 31199484 31206483 - Smim8 protein_coding processed_transcript MGP_AJ_T0014439.1 MGP_AJ_G0012534.1 mouse_genomes_project 4 15385655 15388772 - processed_pseudogene processed_pseudogene MGP_AJ_T0065237.1 MGP_AJ_G0028135.1 mouse_genomes_project 4 38226467 38227222 - MGP_AJ_P0065237 Ccl27b protein_coding protein_coding MGP_AJ_T0064808.1 MGP_AJ_G0028029.1 mouse_genomes_project 4 11810535 11833370 + MGP_AJ_P0064808 Tmem64 protein_coding protein_coding MGP_AJ_T0010655.1 MGP_AJ_G0008777.1 mouse_genomes_project 4 153836141 153836198 - Mir7658 miRNA miRNA MGP_AJ_T0068832.1 MGP_AJ_G0028947.1 mouse_genomes_project 4 134570038 134620486 + MGP_AJ_P0068832 Ece1 protein_coding protein_coding MGP_AJ_T0068833.1 MGP_AJ_G0028947.1 mouse_genomes_project 4 134620102 134641805 + MGP_AJ_P0068833 Ece1 protein_coding protein_coding MGP_AJ_T0068834.1 MGP_AJ_G0028947.1 mouse_genomes_project 4 134620313 134632697 + Ece1 protein_coding processed_transcript MGP_AJ_T0068835.1 MGP_AJ_G0028947.1 mouse_genomes_project 4 134620357 134671883 + MGP_AJ_P0068835 Ece1 protein_coding protein_coding MGP_AJ_T0068935.1 MGP_AJ_G0028973.1 mouse_genomes_project 4 136008531 136026080 - MGP_AJ_P0068935 Pqlc2 protein_coding nonsense_mediated_decay MGP_AJ_T0068936.1 MGP_AJ_G0028973.1 mouse_genomes_project 4 136013030 136026103 - MGP_AJ_P0068936 Pqlc2 protein_coding protein_coding MGP_AJ_T0068937.1 MGP_AJ_G0028973.1 mouse_genomes_project 4 136013032 136026060 - MGP_AJ_P0068937 Pqlc2 protein_coding protein_coding MGP_AJ_T0068938.1 MGP_AJ_G0028973.1 mouse_genomes_project 4 136013032 136026073 - MGP_AJ_P0068938 Pqlc2 protein_coding protein_coding MGP_AJ_T0068939.1 MGP_AJ_G0028973.1 mouse_genomes_project 4 136015812 136026032 - MGP_AJ_P0068939 Pqlc2 protein_coding nonsense_mediated_decay MGP_AJ_T0068940.1 MGP_AJ_G0028974.1 mouse_genomes_project 4 136026138 136033646 + MGP_AJ_P0068940 Akr7a5 protein_coding protein_coding MGP_AJ_T0068941.1 MGP_AJ_G0028974.1 mouse_genomes_project 4 136031801 136032630 + Akr7a5 protein_coding processed_transcript MGP_AJ_T0068919.1 MGP_AJ_G0028970.1 mouse_genomes_project 4 135793769 135804516 - MGP_AJ_P0068919 Nbl1 protein_coding protein_coding MGP_AJ_T0068920.1 MGP_AJ_G0028970.1 mouse_genomes_project 4 135794692 135803629 - Nbl1 protein_coding processed_transcript MGP_AJ_T0068921.1 MGP_AJ_G0028970.1 mouse_genomes_project 4 135803598 135804491 - Nbl1 protein_coding processed_transcript MGP_AJ_T0010635.1 MGP_AJ_G0008757.1 mouse_genomes_project 4 134221147 134221232 + Mir7018 miRNA miRNA MGP_AJ_T0068677.1 MGP_AJ_G0028910.1 mouse_genomes_project 4 132487796 132490722 - MGP_AJ_P0068677 Pnrc2 protein_coding protein_coding MGP_AJ_T0068678.1 MGP_AJ_G0028910.1 mouse_genomes_project 4 132489195 132490442 - MGP_AJ_P0068678 Pnrc2 protein_coding protein_coding MGP_AJ_T0068679.1 MGP_AJ_G0028910.1 mouse_genomes_project 4 132489322 132489933 - MGP_AJ_P0068679 Pnrc2 protein_coding protein_coding MGP_AJ_T0001412.1 MGP_AJ_G0001335.1 mouse_genomes_project 4 41362664 41364975 + TEC TEC MGP_AJ_T0007976.1 MGP_AJ_G0006511.1 mouse_genomes_project 4 126647978 126651131 + 1700003M07Rik lincRNA lincRNA MGP_AJ_T0007977.1 MGP_AJ_G0006511.1 mouse_genomes_project 4 126648412 126651268 + 1700003M07Rik lincRNA lincRNA MGP_AJ_T0066834.1 MGP_AJ_G0028507.1 mouse_genomes_project 4 104693189 104702763 + MGP_AJ_P0066834 0610037L13Rik protein_coding protein_coding MGP_AJ_T0066835.1 MGP_AJ_G0028507.1 mouse_genomes_project 4 104693201 104700359 + MGP_AJ_P0066835 0610037L13Rik protein_coding protein_coding MGP_AJ_T0066836.1 MGP_AJ_G0028507.1 mouse_genomes_project 4 104693225 104700641 + 0610037L13Rik protein_coding processed_transcript MGP_AJ_T0066837.1 MGP_AJ_G0028507.1 mouse_genomes_project 4 104693239 104700497 + MGP_AJ_P0066837 0610037L13Rik protein_coding protein_coding MGP_AJ_T0066838.1 MGP_AJ_G0028507.1 mouse_genomes_project 4 104693242 104699240 + MGP_AJ_P0066838 0610037L13Rik protein_coding protein_coding MGP_AJ_T0066839.1 MGP_AJ_G0028507.1 mouse_genomes_project 4 104693245 104698725 + MGP_AJ_P0066839 0610037L13Rik protein_coding protein_coding MGP_AJ_T0066840.1 MGP_AJ_G0028507.1 mouse_genomes_project 4 104693274 104700497 + MGP_AJ_P0066840 0610037L13Rik protein_coding nonsense_mediated_decay MGP_AJ_T0066841.1 MGP_AJ_G0028507.1 mouse_genomes_project 4 104693275 104701181 + MGP_AJ_P0066841 0610037L13Rik protein_coding protein_coding MGP_AJ_T0066842.1 MGP_AJ_G0028507.1 mouse_genomes_project 4 104693284 104695382 + MGP_AJ_P0066842 0610037L13Rik protein_coding protein_coding MGP_AJ_T0066843.1 MGP_AJ_G0028507.1 mouse_genomes_project 4 104693495 104700543 + 0610037L13Rik protein_coding processed_transcript MGP_AJ_T0066844.1 MGP_AJ_G0028507.1 mouse_genomes_project 4 104693603 104700436 + 0610037L13Rik protein_coding processed_transcript MGP_AJ_T0066845.1 MGP_AJ_G0028507.1 mouse_genomes_project 4 104693616 104700497 + 0610037L13Rik protein_coding processed_transcript MGP_AJ_T0066846.1 MGP_AJ_G0028507.1 mouse_genomes_project 4 104696552 104700432 + 0610037L13Rik protein_coding retained_intron MGP_AJ_T0066847.1 MGP_AJ_G0028507.1 mouse_genomes_project 4 104696748 104700497 + MGP_AJ_P0066847 0610037L13Rik protein_coding protein_coding MGP_AJ_T0068788.1 MGP_AJ_G0028942.1 mouse_genomes_project 4 134146191 134253511 + MGP_AJ_P0068788 Hspg2 protein_coding protein_coding MGP_AJ_T0068789.1 MGP_AJ_G0028942.1 mouse_genomes_project 4 134146225 134253510 + MGP_AJ_P0068789 Hspg2 protein_coding protein_coding MGP_AJ_T0068790.1 MGP_AJ_G0028942.1 mouse_genomes_project 4 134146249 134253516 + MGP_AJ_P0068790 Hspg2 protein_coding unknown_likely_coding MGP_AJ_T0068791.1 MGP_AJ_G0028942.1 mouse_genomes_project 4 134252037 134252991 + Hspg2 protein_coding processed_transcript MGP_AJ_T0014723.1 MGP_AJ_G0012818.1 mouse_genomes_project 4 112460759 112461056 + processed_pseudogene processed_pseudogene MGP_AJ_T0065857.1 MGP_AJ_G0028274.1 mouse_genomes_project 4 53509720 53593799 - MGP_AJ_P0065857 Tmem245 protein_coding protein_coding MGP_AJ_T0065858.1 MGP_AJ_G0028274.1 mouse_genomes_project 4 53523286 53582962 - Tmem245 protein_coding processed_transcript MGP_AJ_T0065859.1 MGP_AJ_G0028274.1 mouse_genomes_project 4 53523286 53567870 - MGP_AJ_P0065859 Tmem245 protein_coding protein_coding MGP_AJ_T0065860.1 MGP_AJ_G0028274.1 mouse_genomes_project 4 53523657 53593773 - MGP_AJ_P0065860 Tmem245 protein_coding protein_coding MGP_AJ_T0065861.1 MGP_AJ_G0028274.1 mouse_genomes_project 4 53529040 53593786 - Tmem245 protein_coding processed_transcript MGP_AJ_T0068063.1 MGP_AJ_G0028784.1 mouse_genomes_project 4 126169803 126170570 + MGP_AJ_P0068063 Fam229a protein_coding protein_coding MGP_AJ_T0068064.1 MGP_AJ_G0028784.1 mouse_genomes_project 4 126169853 126170570 + Fam229a protein_coding retained_intron MGP_AJ_T0014499.1 MGP_AJ_G0012594.1 mouse_genomes_project 4 31348364 31350100 + processed_pseudogene processed_pseudogene MGP_AJ_T0011583.1 MGP_AJ_G0009705.1 mouse_genomes_project 4 117616846 117617165 + Gm22982 misc_RNA misc_RNA MGP_AJ_T0068767.1 MGP_AJ_G0028931.1 mouse_genomes_project 4 133301650 133493607 - MGP_AJ_P0068767 Ephb2 protein_coding protein_coding MGP_AJ_T0068768.1 MGP_AJ_G0028931.1 mouse_genomes_project 4 133307719 133493575 - MGP_AJ_P0068768 Ephb2 protein_coding protein_coding MGP_AJ_T0068769.1 MGP_AJ_G0028931.1 mouse_genomes_project 4 133308756 133493462 - MGP_AJ_P0068769 Ephb2 protein_coding protein_coding MGP_AJ_T0068770.1 MGP_AJ_G0028931.1 mouse_genomes_project 4 133313829 133316331 - Ephb2 protein_coding retained_intron MGP_AJ_T0068771.1 MGP_AJ_G0028931.1 mouse_genomes_project 4 133316141 133352020 - MGP_AJ_P0068771 Ephb2 protein_coding protein_coding MGP_AJ_T0068772.1 MGP_AJ_G0028931.1 mouse_genomes_project 4 133427018 133493593 - Ephb2 protein_coding retained_intron MGP_AJ_T0099918.1 MGP_AJ_G0037884.1 mouse_genomes_project 4 48462082 48462247 - Gm22042 snRNA snRNA MGP_AJ_T0102624.1 MGP_AJ_G0040366.1 mouse_genomes_project 4 141413037 141413490 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0069211.1 MGP_AJ_G0029062.1 mouse_genomes_project 4 141664780 141674853 - MGP_AJ_P0069211 Gm13124 protein_coding protein_coding MGP_AJ_T0065775.1 MGP_AJ_G0028248.1 mouse_genomes_project 4 46387539 46390817 - MGP_AJ_P0065775 Ppp3r2 protein_coding protein_coding MGP_AJ_T0065050.1 MGP_AJ_G0028092.1 mouse_genomes_project 4 31322586 31336884 + MGP_AJ_P0065050 Cga protein_coding protein_coding MGP_AJ_T0065051.1 MGP_AJ_G0028092.1 mouse_genomes_project 4 31322595 31336646 + MGP_AJ_P0065051 Cga protein_coding protein_coding MGP_AJ_T0065052.1 MGP_AJ_G0028092.1 mouse_genomes_project 4 31322595 31336692 + MGP_AJ_P0065052 Cga protein_coding protein_coding MGP_AJ_T0011579.1 MGP_AJ_G0009701.1 mouse_genomes_project 4 108749199 108749525 - Gm25844 misc_RNA misc_RNA MGP_AJ_T0069008.1 MGP_AJ_G0028992.1 mouse_genomes_project 4 137720211 137739253 + MGP_AJ_P0069008 Sdhb protein_coding protein_coding MGP_AJ_T0069009.1 MGP_AJ_G0028992.1 mouse_genomes_project 4 137720409 137736856 + Sdhb protein_coding processed_transcript MGP_AJ_T0069010.1 MGP_AJ_G0028992.1 mouse_genomes_project 4 137720411 137734357 + Sdhb protein_coding processed_transcript MGP_AJ_T0014701.1 MGP_AJ_G0012796.1 mouse_genomes_project 4 104563704 104564145 - processed_pseudogene processed_pseudogene MGP_AJ_T0068595.1 MGP_AJ_G0028892.1 mouse_genomes_project 4 131348188 131374797 - MGP_AJ_P0068595 Ldlrap1 protein_coding protein_coding MGP_AJ_T0068596.1 MGP_AJ_G0028892.1 mouse_genomes_project 4 131353207 131356739 - Ldlrap1 protein_coding retained_intron MGP_AJ_T0068597.1 MGP_AJ_G0028892.1 mouse_genomes_project 4 131356047 131357481 - Ldlrap1 protein_coding retained_intron MGP_AJ_T0014832.1 MGP_AJ_G0012927.1 mouse_genomes_project 4 147285841 147286398 - processed_pseudogene processed_pseudogene MGP_AJ_T0014599.1 MGP_AJ_G0012694.1 mouse_genomes_project 4 70289271 70290134 - processed_pseudogene processed_pseudogene MGP_AJ_T0102585.1 MGP_AJ_G0040327.1 mouse_genomes_project 4 58755955 58758582 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0018071.1 MGP_AJ_G0015540.1 mouse_genomes_project 4 100337073 100349927 - Gm12720 processed_transcript processed_transcript MGP_AJ_T0007817.1 MGP_AJ_G0006385.1 mouse_genomes_project 4 16271536 16274691 - Gm12354 lincRNA lincRNA MGP_AJ_T0007818.1 MGP_AJ_G0006385.1 mouse_genomes_project 4 16271536 16275004 - Gm12354 lincRNA lincRNA MGP_AJ_T0101216.1 MGP_AJ_G0039182.1 mouse_genomes_project 4 53541188 53541321 - Gm25053 snoRNA snoRNA MGP_AJ_T0069268.1 MGP_AJ_G0029080.1 mouse_genomes_project 4 145456875 145477254 + MGP_AJ_P0069268 Mthfr protein_coding unknown_likely_coding MGP_AJ_T0069269.1 MGP_AJ_G0029080.1 mouse_genomes_project 4 145458507 145461146 + Mthfr protein_coding retained_intron MGP_AJ_T0069270.1 MGP_AJ_G0029080.1 mouse_genomes_project 4 145458888 145477252 + MGP_AJ_P0069270 Mthfr protein_coding protein_coding MGP_AJ_T0069271.1 MGP_AJ_G0029080.1 mouse_genomes_project 4 145458984 145477252 + MGP_AJ_P0069271 Mthfr protein_coding nonsense_mediated_decay MGP_AJ_T0069272.1 MGP_AJ_G0029080.1 mouse_genomes_project 4 145470373 145477249 + MGP_AJ_P0069272 Mthfr protein_coding nonsense_mediated_decay MGP_AJ_T0102623.1 MGP_AJ_G0040365.1 mouse_genomes_project 4 141339350 141341760 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0068441.1 MGP_AJ_G0028859.1 mouse_genomes_project 4 130165465 130172922 + MGP_AJ_P0068441 Gpn2 protein_coding protein_coding MGP_AJ_T0068442.1 MGP_AJ_G0028859.1 mouse_genomes_project 4 130165522 130172672 + MGP_AJ_P0068442 Gpn2 protein_coding protein_coding MGP_AJ_T0068443.1 MGP_AJ_G0028859.1 mouse_genomes_project 4 130165531 130167331 + Gpn2 protein_coding processed_transcript MGP_AJ_T0068778.1 MGP_AJ_G0028936.1 mouse_genomes_project 4 133638222 133707003 - MGP_AJ_P0068778 Zbtb40 protein_coding unknown_likely_coding MGP_AJ_T0068779.1 MGP_AJ_G0028936.1 mouse_genomes_project 4 133638225 133706916 - MGP_AJ_P0068779 Zbtb40 protein_coding protein_coding MGP_AJ_T0068780.1 MGP_AJ_G0028936.1 mouse_genomes_project 4 133672658 133707022 - Zbtb40 protein_coding retained_intron MGP_AJ_T0066280.1 MGP_AJ_G0028372.1 mouse_genomes_project 4 83330924 83332543 + MGP_AJ_P0066280 Rraga protein_coding protein_coding MGP_AJ_T0099938.1 MGP_AJ_G0037904.1 mouse_genomes_project 4 97932869 97932973 + Gm24468 snRNA snRNA MGP_AJ_T0066266.1 MGP_AJ_G0028370.1 mouse_genomes_project 4 82774776 82813103 + Adamtsl1 protein_coding retained_intron MGP_AJ_T0066267.1 MGP_AJ_G0028370.1 mouse_genomes_project 4 82774776 83153704 + MGP_AJ_P0066267 Adamtsl1 protein_coding protein_coding MGP_AJ_T0066268.1 MGP_AJ_G0028370.1 mouse_genomes_project 4 82774784 82980633 + MGP_AJ_P0066268 Adamtsl1 protein_coding protein_coding MGP_AJ_T0066269.1 MGP_AJ_G0028370.1 mouse_genomes_project 4 82774789 83153707 + MGP_AJ_P0066269 Adamtsl1 protein_coding protein_coding MGP_AJ_T0066270.1 MGP_AJ_G0028370.1 mouse_genomes_project 4 82774836 82924537 + MGP_AJ_P0066270 Adamtsl1 protein_coding protein_coding MGP_AJ_T0066271.1 MGP_AJ_G0028370.1 mouse_genomes_project 4 82774881 82962093 + Adamtsl1 protein_coding retained_intron MGP_AJ_T0066272.1 MGP_AJ_G0028370.1 mouse_genomes_project 4 82812940 82837498 + Adamtsl1 protein_coding retained_intron MGP_AJ_T0066273.1 MGP_AJ_G0028370.1 mouse_genomes_project 4 82924158 82975808 + MGP_AJ_P0066273 Adamtsl1 protein_coding protein_coding MGP_AJ_T0066274.1 MGP_AJ_G0028370.1 mouse_genomes_project 4 82998458 82999072 + Adamtsl1 protein_coding processed_transcript MGP_AJ_T0066275.1 MGP_AJ_G0028370.1 mouse_genomes_project 4 82998735 83153704 + Adamtsl1 protein_coding retained_intron MGP_AJ_T0068913.1 MGP_AJ_G0028968.1 mouse_genomes_project 4 135685881 135703501 + MGP_AJ_P0068913 Tmco4 protein_coding protein_coding MGP_AJ_T0068914.1 MGP_AJ_G0028968.1 mouse_genomes_project 4 135685885 135770742 + MGP_AJ_P0068914 Tmco4 protein_coding protein_coding MGP_AJ_T0068915.1 MGP_AJ_G0028968.1 mouse_genomes_project 4 135685898 135770738 + MGP_AJ_P0068915 Tmco4 protein_coding protein_coding MGP_AJ_T0068916.1 MGP_AJ_G0028968.1 mouse_genomes_project 4 135685902 135747140 + Tmco4 protein_coding processed_transcript MGP_AJ_T0099905.1 MGP_AJ_G0037871.1 mouse_genomes_project 4 33173568 33173675 + Gm23314 snRNA snRNA MGP_AJ_T0068331.1 MGP_AJ_G0028833.1 mouse_genomes_project 4 129098265 129117713 + MGP_AJ_P0068331 Dnajc8 protein_coding protein_coding MGP_AJ_T0068332.1 MGP_AJ_G0028833.1 mouse_genomes_project 4 129098265 129109284 + MGP_AJ_P0068332 Dnajc8 protein_coding nonsense_mediated_decay MGP_AJ_T0068333.1 MGP_AJ_G0028833.1 mouse_genomes_project 4 129098282 129117632 + Dnajc8 protein_coding retained_intron MGP_AJ_T0068334.1 MGP_AJ_G0028833.1 mouse_genomes_project 4 129098291 129106841 + MGP_AJ_P0068334 Dnajc8 protein_coding nonsense_mediated_decay MGP_AJ_T0068335.1 MGP_AJ_G0028833.1 mouse_genomes_project 4 129098292 129117168 + MGP_AJ_P0068335 Dnajc8 protein_coding protein_coding MGP_AJ_T0068336.1 MGP_AJ_G0028833.1 mouse_genomes_project 4 129098296 129114550 + MGP_AJ_P0068336 Dnajc8 protein_coding nonsense_mediated_decay MGP_AJ_T0068337.1 MGP_AJ_G0028833.1 mouse_genomes_project 4 129098296 129117191 + MGP_AJ_P0068337 Dnajc8 protein_coding protein_coding MGP_AJ_T0068338.1 MGP_AJ_G0028833.1 mouse_genomes_project 4 129098355 129117110 + MGP_AJ_P0068338 Dnajc8 protein_coding nonsense_mediated_decay MGP_AJ_T0068339.1 MGP_AJ_G0028833.1 mouse_genomes_project 4 129098374 129117429 + MGP_AJ_P0068339 Dnajc8 protein_coding protein_coding MGP_AJ_T0068340.1 MGP_AJ_G0028833.1 mouse_genomes_project 4 129098743 129107258 + Dnajc8 protein_coding retained_intron MGP_AJ_T0068341.1 MGP_AJ_G0028833.1 mouse_genomes_project 4 129109296 129117165 + MGP_AJ_P0068341 Dnajc8 protein_coding protein_coding MGP_AJ_T0068342.1 MGP_AJ_G0028833.1 mouse_genomes_project 4 129115288 129117414 + Dnajc8 protein_coding retained_intron MGP_AJ_T0011568.1 MGP_AJ_G0009690.1 mouse_genomes_project 4 51103845 51104087 + Gm25687 misc_RNA misc_RNA MGP_AJ_T0067701.1 MGP_AJ_G0028700.1 mouse_genomes_project 4 119931130 119951278 - MGP_AJ_P0067701 Macf1 protein_coding protein_coding MGP_AJ_T0067702.1 MGP_AJ_G0028700.1 mouse_genomes_project 4 119931130 120282563 - MGP_AJ_P0067702 Macf1 protein_coding protein_coding MGP_AJ_T0067703.1 MGP_AJ_G0028700.1 mouse_genomes_project 4 119931213 120137611 - MGP_AJ_P0067703 Macf1 protein_coding protein_coding MGP_AJ_T0067704.1 MGP_AJ_G0028700.1 mouse_genomes_project 4 119931213 119947758 - MGP_AJ_P0067704 Macf1 protein_coding protein_coding MGP_AJ_T0067705.1 MGP_AJ_G0028700.1 mouse_genomes_project 4 119931213 120282563 - MGP_AJ_P0067705 Macf1 protein_coding protein_coding MGP_AJ_T0067706.1 MGP_AJ_G0028700.1 mouse_genomes_project 4 119931213 120061805 - MGP_AJ_P0067706 Macf1 protein_coding protein_coding MGP_AJ_T0067707.1 MGP_AJ_G0028700.1 mouse_genomes_project 4 119931213 120085931 - MGP_AJ_P0067707 Macf1 protein_coding protein_coding MGP_AJ_T0067708.1 MGP_AJ_G0028700.1 mouse_genomes_project 4 119931213 119953714 - MGP_AJ_P0067708 Macf1 protein_coding protein_coding MGP_AJ_T0067709.1 MGP_AJ_G0028700.1 mouse_genomes_project 4 119931215 120282563 - MGP_AJ_P0067709 Macf1 protein_coding protein_coding MGP_AJ_T0067710.1 MGP_AJ_G0028700.1 mouse_genomes_project 4 119931215 120119430 - MGP_AJ_P0067710 Macf1 protein_coding protein_coding MGP_AJ_T0067711.1 MGP_AJ_G0028700.1 mouse_genomes_project 4 119931217 120282563 - MGP_AJ_P0067711 Macf1 protein_coding protein_coding MGP_AJ_T0067712.1 MGP_AJ_G0028700.1 mouse_genomes_project 4 119964378 119971782 - MGP_AJ_P0067712 Macf1 protein_coding protein_coding MGP_AJ_T0067713.1 MGP_AJ_G0028700.1 mouse_genomes_project 4 119978507 119988772 - Macf1 protein_coding processed_transcript MGP_AJ_T0067714.1 MGP_AJ_G0028700.1 mouse_genomes_project 4 120038389 120119578 - MGP_AJ_P0067714 Macf1 protein_coding protein_coding MGP_AJ_T0067715.1 MGP_AJ_G0028700.1 mouse_genomes_project 4 120038389 120261406 - MGP_AJ_P0067715 Macf1 protein_coding protein_coding MGP_AJ_T0067716.1 MGP_AJ_G0028700.1 mouse_genomes_project 4 120131437 120157490 - Macf1 protein_coding processed_transcript MGP_AJ_T0067891.1 MGP_AJ_G0028745.1 mouse_genomes_project 4 123364662 123384894 - MGP_AJ_P0067891 Tfap2e protein_coding protein_coding MGP_AJ_T0018106.1 MGP_AJ_G0015557.1 mouse_genomes_project 4 130603446 130605149 + Gm13061 processed_transcript processed_transcript MGP_AJ_T0010645.1 MGP_AJ_G0008767.1 mouse_genomes_project 4 139951450 139951513 - Mir7021 miRNA miRNA MGP_AJ_T0067416.1 MGP_AJ_G0028621.1 mouse_genomes_project 4 114311981 114318158 - Ipo13 protein_coding processed_transcript MGP_AJ_T0067417.1 MGP_AJ_G0028621.1 mouse_genomes_project 4 114311981 114335091 - MGP_AJ_P0067417 Ipo13 protein_coding protein_coding MGP_AJ_T0067418.1 MGP_AJ_G0028621.1 mouse_genomes_project 4 114312122 114312610 - Ipo13 protein_coding processed_transcript MGP_AJ_T0067419.1 MGP_AJ_G0028621.1 mouse_genomes_project 4 114312387 114313369 - Ipo13 protein_coding processed_transcript MGP_AJ_T0067420.1 MGP_AJ_G0028621.1 mouse_genomes_project 4 114312835 114313388 - Ipo13 protein_coding processed_transcript MGP_AJ_T0067421.1 MGP_AJ_G0028621.1 mouse_genomes_project 4 114318450 114321363 - Ipo13 protein_coding processed_transcript MGP_AJ_T0067084.1 MGP_AJ_G0028554.1 mouse_genomes_project 4 111312058 111340760 - MGP_AJ_P0067084 Cmpk1 protein_coding protein_coding MGP_AJ_T0067085.1 MGP_AJ_G0028554.1 mouse_genomes_project 4 111315626 111340668 - MGP_AJ_P0067085 Cmpk1 protein_coding nonsense_mediated_decay MGP_AJ_T0067086.1 MGP_AJ_G0028554.1 mouse_genomes_project 4 111321550 111340591 - MGP_AJ_P0067086 Cmpk1 protein_coding nonsense_mediated_decay MGP_AJ_T0067087.1 MGP_AJ_G0028554.1 mouse_genomes_project 4 111338337 111340668 - Cmpk1 protein_coding processed_transcript MGP_AJ_T0014551.1 MGP_AJ_G0012646.1 mouse_genomes_project 4 49454933 49455554 + processed_pseudogene processed_pseudogene MGP_AJ_T0067941.1 MGP_AJ_G0028756.1 mouse_genomes_project 4 123985274 123989189 - MGP_AJ_P0067941 Gjb3 protein_coding protein_coding MGP_AJ_T0067942.1 MGP_AJ_G0028756.1 mouse_genomes_project 4 123985274 123990872 - MGP_AJ_P0067942 Gjb3 protein_coding protein_coding MGP_AJ_T0014568.1 MGP_AJ_G0012663.1 mouse_genomes_project 4 53034292 53035071 + processed_pseudogene processed_pseudogene MGP_AJ_T0064696.1 MGP_AJ_G0028001.1 mouse_genomes_project 4 6312911 6330866 + MGP_AJ_P0064696 Gdf6 protein_coding protein_coding MGP_AJ_T0069413.1 MGP_AJ_G0029106.1 mouse_genomes_project 4 146939106 146942045 + MGP_AJ_P0069413 Lzic protein_coding protein_coding MGP_AJ_T0069414.1 MGP_AJ_G0029106.1 mouse_genomes_project 4 146939108 146942073 + MGP_AJ_P0069414 Lzic protein_coding protein_coding MGP_AJ_T0069415.1 MGP_AJ_G0029106.1 mouse_genomes_project 4 146939117 146939619 + Lzic protein_coding processed_transcript MGP_AJ_T0069416.1 MGP_AJ_G0029106.1 mouse_genomes_project 4 146939171 146950624 + MGP_AJ_P0069416 Lzic protein_coding protein_coding MGP_AJ_T0069417.1 MGP_AJ_G0029106.1 mouse_genomes_project 4 146939210 146939881 + Lzic protein_coding processed_transcript MGP_AJ_T0007945.1 MGP_AJ_G0006493.1 mouse_genomes_project 4 120879088 120886684 - Gm12916 lincRNA lincRNA MGP_AJ_T0014402.1 MGP_AJ_G0012497.1 mouse_genomes_project 4 6430552 6431475 + processed_pseudogene processed_pseudogene MGP_AJ_T0069743.1 MGP_AJ_G0029165.1 mouse_genomes_project 4 152473148 152498579 + MGP_AJ_P0069743 Mmel1 protein_coding protein_coding MGP_AJ_T0069744.1 MGP_AJ_G0029165.1 mouse_genomes_project 4 152473148 152498572 + MGP_AJ_P0069744 Mmel1 protein_coding protein_coding MGP_AJ_T0069745.1 MGP_AJ_G0029165.1 mouse_genomes_project 4 152473199 152498579 + MGP_AJ_P0069745 Mmel1 protein_coding protein_coding MGP_AJ_T0069746.1 MGP_AJ_G0029165.1 mouse_genomes_project 4 152475159 152498572 + MGP_AJ_P0069746 Mmel1 protein_coding protein_coding MGP_AJ_T0069747.1 MGP_AJ_G0029165.1 mouse_genomes_project 4 152475193 152498572 + MGP_AJ_P0069747 Mmel1 protein_coding protein_coding MGP_AJ_T0069748.1 MGP_AJ_G0029165.1 mouse_genomes_project 4 152484439 152487915 + MGP_AJ_P0069748 Mmel1 protein_coding protein_coding MGP_AJ_T0069749.1 MGP_AJ_G0029165.1 mouse_genomes_project 4 152495875 152497006 + Mmel1 protein_coding retained_intron MGP_AJ_T0067682.1 MGP_AJ_G0028694.1 mouse_genomes_project 4 119686064 119699456 - MGP_AJ_P0067682 Ppie protein_coding protein_coding MGP_AJ_T0067683.1 MGP_AJ_G0028694.1 mouse_genomes_project 4 119686269 119696444 - Ppie protein_coding processed_transcript MGP_AJ_T0067684.1 MGP_AJ_G0028694.1 mouse_genomes_project 4 119686650 119698531 - Ppie protein_coding processed_transcript MGP_AJ_T0067685.1 MGP_AJ_G0028694.1 mouse_genomes_project 4 119695947 119699435 - Ppie protein_coding processed_transcript MGP_AJ_T0014633.1 MGP_AJ_G0012728.1 mouse_genomes_project 4 81643655 81644758 - processed_pseudogene processed_pseudogene MGP_AJ_T0004541.1 MGP_AJ_G0003943.1 mouse_genomes_project 4 125608402 125613429 + Gm15904 antisense antisense MGP_AJ_T0098446.1 MGP_AJ_G0036430.1 mouse_genomes_project 4 2972701 2975575 - pseudogene pseudogene MGP_AJ_T0004591.1 MGP_AJ_G0003982.1 mouse_genomes_project 4 146401221 146408879 + Gm17029 antisense antisense MGP_AJ_T0004592.1 MGP_AJ_G0003982.1 mouse_genomes_project 4 146401250 146426229 + Gm17029 antisense antisense MGP_AJ_T0004593.1 MGP_AJ_G0003982.1 mouse_genomes_project 4 146401284 146407914 + Gm17029 antisense antisense MGP_AJ_T0066575.1 MGP_AJ_G0028456.1 mouse_genomes_project 4 98245469 98356793 + MGP_AJ_P0066575 Dnajc6 protein_coding protein_coding MGP_AJ_T0066576.1 MGP_AJ_G0028456.1 mouse_genomes_project 4 98256584 98393598 + MGP_AJ_P0066576 Dnajc6 protein_coding protein_coding MGP_AJ_T0066577.1 MGP_AJ_G0028456.1 mouse_genomes_project 4 98256689 98362162 + MGP_AJ_P0066577 Dnajc6 protein_coding protein_coding MGP_AJ_T0066578.1 MGP_AJ_G0028456.1 mouse_genomes_project 4 98256743 98347594 + Dnajc6 protein_coding processed_transcript MGP_AJ_T0066579.1 MGP_AJ_G0028456.1 mouse_genomes_project 4 98299263 98393606 + MGP_AJ_P0066579 Dnajc6 protein_coding protein_coding MGP_AJ_T0014474.1 MGP_AJ_G0012569.1 mouse_genomes_project 4 25036137 25036896 - processed_pseudogene processed_pseudogene MGP_AJ_T0067050.1 MGP_AJ_G0028543.1 mouse_genomes_project 4 108637998 108666338 - MGP_AJ_P0067050 Slc5a9 protein_coding protein_coding MGP_AJ_T0067051.1 MGP_AJ_G0028543.1 mouse_genomes_project 4 108638052 108646593 - Slc5a9 protein_coding processed_transcript MGP_AJ_T0067052.1 MGP_AJ_G0028543.1 mouse_genomes_project 4 108638896 108662189 - MGP_AJ_P0067052 Slc5a9 protein_coding protein_coding MGP_AJ_T0067053.1 MGP_AJ_G0028543.1 mouse_genomes_project 4 108639870 108666174 - MGP_AJ_P0067053 Slc5a9 protein_coding protein_coding MGP_AJ_T0067054.1 MGP_AJ_G0028543.1 mouse_genomes_project 4 108640114 108643251 - Slc5a9 protein_coding processed_transcript MGP_AJ_T0067055.1 MGP_AJ_G0028543.1 mouse_genomes_project 4 108652308 108659770 - MGP_AJ_P0067055 Slc5a9 protein_coding protein_coding MGP_AJ_T0067056.1 MGP_AJ_G0028543.1 mouse_genomes_project 4 108652637 108654137 - Slc5a9 protein_coding processed_transcript MGP_AJ_T0067057.1 MGP_AJ_G0028543.1 mouse_genomes_project 4 108652676 108653402 - Slc5a9 protein_coding processed_transcript MGP_AJ_T0007826.1 MGP_AJ_G0006393.1 mouse_genomes_project 4 25533913 25553591 + Gm11917 lincRNA lincRNA MGP_AJ_T0014528.1 MGP_AJ_G0012623.1 mouse_genomes_project 4 42452377 42452705 - processed_pseudogene processed_pseudogene MGP_AJ_T0010625.1 MGP_AJ_G0008747.1 mouse_genomes_project 4 129764974 129765036 + Mir7017 miRNA miRNA MGP_AJ_T0067462.1 MGP_AJ_G0028629.1 mouse_genomes_project 4 114854807 114859270 - MGP_AJ_P0067462 Cdc20 protein_coding protein_coding MGP_AJ_T0067463.1 MGP_AJ_G0028629.1 mouse_genomes_project 4 114855011 114858496 - MGP_AJ_P0067463 Cdc20 protein_coding nonsense_mediated_decay MGP_AJ_T0067464.1 MGP_AJ_G0028629.1 mouse_genomes_project 4 114855454 114857739 - Cdc20 protein_coding retained_intron MGP_AJ_T0069626.1 MGP_AJ_G0029145.1 mouse_genomes_project 4 149885047 149891902 + Rpl22 protein_coding processed_transcript MGP_AJ_T0069627.1 MGP_AJ_G0029145.1 mouse_genomes_project 4 149885158 149891906 + MGP_AJ_P0069627 Rpl22 protein_coding protein_coding MGP_AJ_T0069628.1 MGP_AJ_G0029145.1 mouse_genomes_project 4 149885172 149893497 + MGP_AJ_P0069628 Rpl22 protein_coding protein_coding MGP_AJ_T0069629.1 MGP_AJ_G0029145.1 mouse_genomes_project 4 149885174 149893496 + MGP_AJ_P0069629 Rpl22 protein_coding protein_coding MGP_AJ_T0069630.1 MGP_AJ_G0029145.1 mouse_genomes_project 4 149886372 149889352 + Rpl22 protein_coding processed_transcript MGP_AJ_T0069631.1 MGP_AJ_G0029145.1 mouse_genomes_project 4 149886431 149889581 + Rpl22 protein_coding processed_transcript MGP_AJ_T0069632.1 MGP_AJ_G0029145.1 mouse_genomes_project 4 149886785 149891899 + Rpl22 protein_coding processed_transcript MGP_AJ_T0069633.1 MGP_AJ_G0029145.1 mouse_genomes_project 4 149886862 149891900 + Rpl22 protein_coding processed_transcript MGP_AJ_T0101202.1 MGP_AJ_G0039168.1 mouse_genomes_project 4 37661108 37661186 - Gm23090 snoRNA snoRNA MGP_AJ_T0004465.1 MGP_AJ_G0003888.1 mouse_genomes_project 4 60145509 60158164 + Aknaos antisense antisense MGP_AJ_T0066221.1 MGP_AJ_G0028365.1 mouse_genomes_project 4 80158833 80192639 - MGP_AJ_P0066221 Psip1 protein_coding protein_coding MGP_AJ_T0066222.1 MGP_AJ_G0028365.1 mouse_genomes_project 4 80161228 80163430 - Psip1 protein_coding retained_intron MGP_AJ_T0066223.1 MGP_AJ_G0028365.1 mouse_genomes_project 4 80165008 80168102 - MGP_AJ_P0066223 Psip1 protein_coding protein_coding MGP_AJ_T0066224.1 MGP_AJ_G0028365.1 mouse_genomes_project 4 80165008 80192638 - MGP_AJ_P0066224 Psip1 protein_coding protein_coding MGP_AJ_T0066225.1 MGP_AJ_G0028365.1 mouse_genomes_project 4 80165008 80192633 - MGP_AJ_P0066225 Psip1 protein_coding protein_coding MGP_AJ_T0066226.1 MGP_AJ_G0028365.1 mouse_genomes_project 4 80165967 80168181 - Psip1 protein_coding retained_intron MGP_AJ_T0066228.1 MGP_AJ_G0028365.1 mouse_genomes_project 4 80180661 80192364 - MGP_AJ_P0066228 Psip1 protein_coding protein_coding MGP_AJ_T0014614.1 MGP_AJ_G0012709.1 mouse_genomes_project 4 73582591 73582828 - processed_pseudogene processed_pseudogene MGP_AJ_T0068379.1 MGP_AJ_G0028844.1 mouse_genomes_project 4 129585615 129634660 + Ahdc1 protein_coding processed_transcript MGP_AJ_T0068380.1 MGP_AJ_G0028844.1 mouse_genomes_project 4 129585861 129651777 + MGP_AJ_P0068380 Ahdc1 protein_coding protein_coding MGP_AJ_T0068381.1 MGP_AJ_G0028844.1 mouse_genomes_project 4 129585861 129652024 + MGP_AJ_P0068381 Ahdc1 protein_coding protein_coding MGP_AJ_T0068382.1 MGP_AJ_G0028844.1 mouse_genomes_project 4 129585898 129634951 + Ahdc1 protein_coding processed_transcript MGP_AJ_T0068383.1 MGP_AJ_G0028844.1 mouse_genomes_project 4 129585920 129629131 + Ahdc1 protein_coding processed_transcript MGP_AJ_T0068384.1 MGP_AJ_G0028844.1 mouse_genomes_project 4 129586193 129651566 + Ahdc1 protein_coding processed_transcript MGP_AJ_T0068385.1 MGP_AJ_G0028844.1 mouse_genomes_project 4 129586405 129634662 + Ahdc1 protein_coding processed_transcript MGP_AJ_T0068386.1 MGP_AJ_G0028844.1 mouse_genomes_project 4 129586447 129635616 + Ahdc1 protein_coding processed_transcript MGP_AJ_T0068387.1 MGP_AJ_G0028844.1 mouse_genomes_project 4 129586559 129651567 + MGP_AJ_P0068387 Ahdc1 protein_coding protein_coding MGP_AJ_T0068388.1 MGP_AJ_G0028844.1 mouse_genomes_project 4 129613575 129651178 + MGP_AJ_P0068388 Ahdc1 protein_coding protein_coding MGP_AJ_T0068389.1 MGP_AJ_G0028844.1 mouse_genomes_project 4 129640091 129645982 + Ahdc1 protein_coding processed_transcript MGP_AJ_T0064578.1 MGP_AJ_G0027979.1 mouse_genomes_project 4 13088 52238 - MGP_AJ_P0064578 Tmem68 protein_coding protein_coding MGP_AJ_T0064579.1 MGP_AJ_G0027979.1 mouse_genomes_project 4 13088 52194 - MGP_AJ_P0064579 Tmem68 protein_coding nonsense_mediated_decay MGP_AJ_T0064580.1 MGP_AJ_G0027979.1 mouse_genomes_project 4 14375 16344 - Tmem68 protein_coding retained_intron MGP_AJ_T0064581.1 MGP_AJ_G0027979.1 mouse_genomes_project 4 40816 52189 - Tmem68 protein_coding retained_intron MGP_AJ_T0064582.1 MGP_AJ_G0027979.1 mouse_genomes_project 4 40835 52189 - Tmem68 protein_coding processed_transcript MGP_AJ_T0064583.1 MGP_AJ_G0027979.1 mouse_genomes_project 4 41010 51118 - MGP_AJ_P0064583 Tmem68 protein_coding protein_coding MGP_AJ_T0067993.1 MGP_AJ_G0028770.1 mouse_genomes_project 4 125729953 125756040 + MGP_AJ_P0067993 Rnf19b protein_coding protein_coding MGP_AJ_T0067994.1 MGP_AJ_G0028770.1 mouse_genomes_project 4 125729953 125757249 + MGP_AJ_P0067994 Rnf19b protein_coding protein_coding MGP_AJ_T0067995.1 MGP_AJ_G0028770.1 mouse_genomes_project 4 125730091 125752071 + MGP_AJ_P0067995 Rnf19b protein_coding protein_coding MGP_AJ_T0067996.1 MGP_AJ_G0028770.1 mouse_genomes_project 4 125730496 125756040 + MGP_AJ_P0067996 Rnf19b protein_coding protein_coding MGP_AJ_T0067997.1 MGP_AJ_G0028770.1 mouse_genomes_project 4 125750492 125757400 + MGP_AJ_P0067997 Rnf19b protein_coding protein_coding MGP_AJ_T0067998.1 MGP_AJ_G0028770.1 mouse_genomes_project 4 125755398 125757400 + Rnf19b protein_coding processed_transcript MGP_AJ_T0014602.1 MGP_AJ_G0012697.1 mouse_genomes_project 4 71440980 71441633 + processed_pseudogene processed_pseudogene MGP_AJ_T0004509.1 MGP_AJ_G0003916.1 mouse_genomes_project 4 111160028 111245764 - 9130410C08Rik antisense antisense MGP_AJ_T0004578.1 MGP_AJ_G0003973.1 mouse_genomes_project 4 138800883 138811838 + 4930455G09Rik antisense antisense MGP_AJ_T0014672.1 MGP_AJ_G0012767.1 mouse_genomes_project 4 96192752 96192966 - processed_pseudogene processed_pseudogene MGP_AJ_T0099902.1 MGP_AJ_G0037868.1 mouse_genomes_project 4 27584797 27584901 - Gm25705 snRNA snRNA MGP_AJ_T0008030.1 MGP_AJ_G0006552.1 mouse_genomes_project 4 147250781 147251469 - Gm13073 lincRNA lincRNA MGP_AJ_T0014689.1 MGP_AJ_G0012784.1 mouse_genomes_project 4 100745474 100746457 + processed_pseudogene processed_pseudogene MGP_AJ_T0014748.1 MGP_AJ_G0012843.1 mouse_genomes_project 4 117708760 117709133 - processed_pseudogene processed_pseudogene MGP_AJ_T0018111.1 MGP_AJ_G0015562.1 mouse_genomes_project 4 152564436 152565345 - Gm20421 processed_transcript processed_transcript MGP_AJ_T0101188.1 MGP_AJ_G0039154.1 mouse_genomes_project 4 10642984 10643116 - Gm24068 snoRNA snoRNA MGP_AJ_T0010646.1 MGP_AJ_G0008768.1 mouse_genomes_project 4 145566001 145566062 - Mir7022 miRNA miRNA MGP_AJ_T0065703.1 MGP_AJ_G0028227.1 mouse_genomes_project 4 44122682 44128386 - Alg2 protein_coding processed_transcript MGP_AJ_T0065704.1 MGP_AJ_G0028227.1 mouse_genomes_project 4 44127448 44131985 - MGP_AJ_P0065704 Alg2 protein_coding protein_coding MGP_AJ_T0065705.1 MGP_AJ_G0028227.1 mouse_genomes_project 4 44129509 44131629 - MGP_AJ_P0065705 Alg2 protein_coding protein_coding MGP_AJ_T0014653.1 MGP_AJ_G0012748.1 mouse_genomes_project 4 89156488 89156786 - processed_pseudogene processed_pseudogene MGP_AJ_T0014775.1 MGP_AJ_G0012870.1 mouse_genomes_project 4 125538498 125539372 - processed_pseudogene processed_pseudogene MGP_AJ_T0067113.1 MGP_AJ_G0028563.1 mouse_genomes_project 4 111895684 111907826 + MGP_AJ_P0067113 unknown_likely_coding unknown_likely_coding MGP_AJ_T0018116.1 MGP_AJ_G0015564.1 mouse_genomes_project 4 153228071 153245974 - Gm16023 processed_transcript processed_transcript MGP_AJ_T0018117.1 MGP_AJ_G0015564.1 mouse_genomes_project 4 153236670 153245699 - Gm16023 processed_transcript processed_transcript MGP_AJ_T0065660.1 MGP_AJ_G0028216.1 mouse_genomes_project 4 43066837 43086434 - MGP_AJ_P0065660 Hemgn protein_coding protein_coding MGP_AJ_T0065661.1 MGP_AJ_G0028216.1 mouse_genomes_project 4 43066837 43077329 - MGP_AJ_P0065661 Hemgn protein_coding protein_coding MGP_AJ_T0007931.1 MGP_AJ_G0006480.1 mouse_genomes_project 4 104587365 104593567 + 4933424M12Rik lincRNA lincRNA MGP_AJ_T0007932.1 MGP_AJ_G0006480.1 mouse_genomes_project 4 104591494 104593567 + 4933424M12Rik lincRNA lincRNA MGP_AJ_T0014731.1 MGP_AJ_G0012826.1 mouse_genomes_project 4 114175080 114175403 - processed_pseudogene processed_pseudogene MGP_AJ_T0064928.1 MGP_AJ_G0028063.1 mouse_genomes_project 4 22778330 22803056 - MGP_AJ_P0064928 Manea protein_coding protein_coding MGP_AJ_T0064929.1 MGP_AJ_G0028063.1 mouse_genomes_project 4 22781873 22797147 - Manea protein_coding processed_transcript MGP_AJ_T0064930.1 MGP_AJ_G0028063.1 mouse_genomes_project 4 22796711 22803019 - Manea protein_coding processed_transcript MGP_AJ_T0064931.1 MGP_AJ_G0028063.1 mouse_genomes_project 4 22797002 22803056 - MGP_AJ_P0064931 Manea protein_coding protein_coding MGP_AJ_T0069277.1 MGP_AJ_G0029083.1 mouse_genomes_project 4 145548538 145559857 + Mad2l2 protein_coding processed_transcript MGP_AJ_T0069278.1 MGP_AJ_G0029083.1 mouse_genomes_project 4 145559247 145564187 + MGP_AJ_P0069278 Mad2l2 protein_coding protein_coding MGP_AJ_T0069279.1 MGP_AJ_G0029083.1 mouse_genomes_project 4 145559789 145564186 + MGP_AJ_P0069279 Mad2l2 protein_coding protein_coding MGP_AJ_T0069280.1 MGP_AJ_G0029083.1 mouse_genomes_project 4 145559827 145562526 + Mad2l2 protein_coding retained_intron MGP_AJ_T0069281.1 MGP_AJ_G0029083.1 mouse_genomes_project 4 145559860 145564750 + MGP_AJ_P0069281 Mad2l2 protein_coding protein_coding MGP_AJ_T0069282.1 MGP_AJ_G0029083.1 mouse_genomes_project 4 145563855 145564517 + Mad2l2 protein_coding retained_intron MGP_AJ_T0101231.1 MGP_AJ_G0039197.1 mouse_genomes_project 4 79795252 79795371 + Gm24884 snoRNA snoRNA MGP_AJ_T0101256.1 MGP_AJ_G0039222.1 mouse_genomes_project 4 127310545 127310628 + Gm23711 snoRNA snoRNA MGP_AJ_T0068784.1 MGP_AJ_G0028939.1 mouse_genomes_project 4 134075371 134083086 - MGP_AJ_P0068784 Cela3a protein_coding protein_coding MGP_AJ_T0066455.1 MGP_AJ_G0028429.1 mouse_genomes_project 4 93324053 93358303 - MGP_AJ_P0066455 Cyp2j5 protein_coding protein_coding MGP_AJ_T0066335.1 MGP_AJ_G0028385.1 mouse_genomes_project 4 85378000 85378573 - MGP_AJ_P0066335 Ifna9 protein_coding protein_coding MGP_AJ_T0008007.1 MGP_AJ_G0006530.1 mouse_genomes_project 4 133775638 133776640 - Gm13001 lincRNA lincRNA MGP_AJ_T0004511.1 MGP_AJ_G0003918.1 mouse_genomes_project 4 112268433 112268693 - Gm29434 antisense antisense MGP_AJ_T0067292.1 MGP_AJ_G0028599.1 mouse_genomes_project 4 113283358 113392727 + MGP_AJ_P0067292 Zswim5 protein_coding protein_coding MGP_AJ_T0014691.1 MGP_AJ_G0012786.1 mouse_genomes_project 4 102176755 102177248 - processed_pseudogene processed_pseudogene MGP_AJ_T0064623.1 MGP_AJ_G0027990.1 mouse_genomes_project 4 2188227 2340561 + Fam110b protein_coding processed_transcript MGP_AJ_T0064624.1 MGP_AJ_G0027990.1 mouse_genomes_project 4 2188258 2343280 + MGP_AJ_P0064624 Fam110b protein_coding protein_coding MGP_AJ_T0064625.1 MGP_AJ_G0027990.1 mouse_genomes_project 4 2188262 2275203 + Fam110b protein_coding retained_intron MGP_AJ_T0064626.1 MGP_AJ_G0027990.1 mouse_genomes_project 4 2188327 2340673 + Fam110b protein_coding processed_transcript MGP_AJ_T0064627.1 MGP_AJ_G0027990.1 mouse_genomes_project 4 2188372 2648609 + Fam110b protein_coding processed_transcript MGP_AJ_T0064628.1 MGP_AJ_G0027990.1 mouse_genomes_project 4 2265981 2343280 + MGP_AJ_P0064628 Fam110b protein_coding protein_coding MGP_AJ_T0064629.1 MGP_AJ_G0027990.1 mouse_genomes_project 4 2314419 2341024 + MGP_AJ_P0064629 Fam110b protein_coding protein_coding MGP_AJ_T0064630.1 MGP_AJ_G0027990.1 mouse_genomes_project 4 2314419 2342125 + MGP_AJ_P0064630 Fam110b protein_coding protein_coding MGP_AJ_T0064631.1 MGP_AJ_G0027990.1 mouse_genomes_project 4 2340262 2340710 + Fam110b protein_coding processed_transcript MGP_AJ_T0004550.1 MGP_AJ_G0003950.1 mouse_genomes_project 4 130056674 130059853 - Gm13257 antisense antisense MGP_AJ_T0007966.1 MGP_AJ_G0006505.1 mouse_genomes_project 4 125515239 125544113 + Gm12968 lincRNA lincRNA MGP_AJ_T0066895.1 MGP_AJ_G0028516.1 mouse_genomes_project 4 105174684 105190998 - MGP_AJ_P0066895 Fam159a protein_coding protein_coding MGP_AJ_T0014698.1 MGP_AJ_G0012793.1 mouse_genomes_project 4 104081117 104081553 + processed_pseudogene processed_pseudogene MGP_AJ_T0067611.1 MGP_AJ_G0028670.1 mouse_genomes_project 4 117005940 117038363 - MGP_AJ_P0067611 Ctps protein_coding protein_coding MGP_AJ_T0067612.1 MGP_AJ_G0028670.1 mouse_genomes_project 4 117008058 117013320 - Ctps protein_coding processed_transcript MGP_AJ_T0067613.1 MGP_AJ_G0028670.1 mouse_genomes_project 4 117008116 117016355 - Ctps protein_coding processed_transcript MGP_AJ_T0066775.1 MGP_AJ_G0028497.1 mouse_genomes_project 4 104017909 104027758 + MGP_AJ_P0066775 Ldlrad1 protein_coding protein_coding MGP_AJ_T0007883.1 MGP_AJ_G0006443.1 mouse_genomes_project 4 78773619 78799260 - Gm11264 lincRNA lincRNA MGP_AJ_T0101184.1 MGP_AJ_G0039150.1 mouse_genomes_project 4 1309166 1309298 + Gm26436 snoRNA snoRNA MGP_AJ_T0099028.1 MGP_AJ_G0037005.1 mouse_genomes_project 4 138825481 138831144 - Gm13053 sense_intronic sense_intronic MGP_AJ_T0014822.1 MGP_AJ_G0012917.1 mouse_genomes_project 4 141697318 141699360 + processed_pseudogene processed_pseudogene MGP_AJ_T0008023.1 MGP_AJ_G0006545.1 mouse_genomes_project 4 138115188 138118228 + Gm13074 lincRNA lincRNA MGP_AJ_T0066229.1 MGP_AJ_G0028366.1 mouse_genomes_project 4 80230495 80560893 + MGP_AJ_P0066229 Ccdc171 protein_coding protein_coding MGP_AJ_T0066230.1 MGP_AJ_G0028366.1 mouse_genomes_project 4 80230555 80560670 + MGP_AJ_P0066230 Ccdc171 protein_coding unknown_likely_coding MGP_AJ_T0066231.1 MGP_AJ_G0028366.1 mouse_genomes_project 4 80230564 80254999 + MGP_AJ_P0066231 Ccdc171 protein_coding protein_coding MGP_AJ_T0066232.1 MGP_AJ_G0028366.1 mouse_genomes_project 4 80230589 80560808 + MGP_AJ_P0066232 Ccdc171 protein_coding nonsense_mediated_decay MGP_AJ_T0066233.1 MGP_AJ_G0028366.1 mouse_genomes_project 4 80249392 80258293 + Ccdc171 protein_coding processed_transcript MGP_AJ_T0066234.1 MGP_AJ_G0028366.1 mouse_genomes_project 4 80391078 80491968 + Ccdc171 protein_coding processed_transcript MGP_AJ_T0069291.1 MGP_AJ_G0029085.1 mouse_genomes_project 4 145571861 145578963 - MGP_AJ_P0069291 Fbxo44 protein_coding protein_coding MGP_AJ_T0069292.1 MGP_AJ_G0029085.1 mouse_genomes_project 4 145571864 145579451 - MGP_AJ_P0069292 Fbxo44 protein_coding protein_coding MGP_AJ_T0069293.1 MGP_AJ_G0029085.1 mouse_genomes_project 4 145571864 145579462 - MGP_AJ_P0069293 Fbxo44 protein_coding nonsense_mediated_decay MGP_AJ_T0069294.1 MGP_AJ_G0029085.1 mouse_genomes_project 4 145572328 145579245 - MGP_AJ_P0069294 Fbxo44 protein_coding protein_coding MGP_AJ_T0069295.1 MGP_AJ_G0029085.1 mouse_genomes_project 4 145572598 145577967 - MGP_AJ_P0069295 Fbxo44 protein_coding nonsense_mediated_decay MGP_AJ_T0069296.1 MGP_AJ_G0029085.1 mouse_genomes_project 4 145572633 145579243 - MGP_AJ_P0069296 Fbxo44 protein_coding nonsense_mediated_decay MGP_AJ_T0069297.1 MGP_AJ_G0029085.1 mouse_genomes_project 4 145572633 145579017 - MGP_AJ_P0069297 Fbxo44 protein_coding protein_coding MGP_AJ_T0069298.1 MGP_AJ_G0029085.1 mouse_genomes_project 4 145574559 145579219 - MGP_AJ_P0069298 Fbxo44 protein_coding protein_coding MGP_AJ_T0069299.1 MGP_AJ_G0029085.1 mouse_genomes_project 4 145575207 145579217 - MGP_AJ_P0069299 Fbxo44 protein_coding nonsense_mediated_decay MGP_AJ_T0069300.1 MGP_AJ_G0029085.1 mouse_genomes_project 4 145575227 145579850 - MGP_AJ_P0069300 Fbxo44 protein_coding protein_coding MGP_AJ_T0014597.1 MGP_AJ_G0012692.1 mouse_genomes_project 4 69810895 69817623 + processed_pseudogene processed_pseudogene MGP_AJ_T0069168.1 MGP_AJ_G0029032.1 mouse_genomes_project 4 140384867 140440473 + MGP_AJ_P0069168 protein_coding protein_coding MGP_AJ_T0065647.1 MGP_AJ_G0028213.1 mouse_genomes_project 4 42828435 42869260 - MGP_AJ_P0065647 Xpa protein_coding protein_coding MGP_AJ_T0065650.1 MGP_AJ_G0028213.1 mouse_genomes_project 4 42848277 42858743 - Xpa protein_coding processed_transcript MGP_AJ_T0065651.1 MGP_AJ_G0028213.1 mouse_genomes_project 4 42848277 42858710 - MGP_AJ_P0065651 Xpa protein_coding nonsense_mediated_decay MGP_AJ_T0065652.1 MGP_AJ_G0028213.1 mouse_genomes_project 4 42848277 42869260 - MGP_AJ_P0065652 Xpa protein_coding protein_coding MGP_AJ_T0065653.1 MGP_AJ_G0028213.1 mouse_genomes_project 4 42853398 42869169 - MGP_AJ_P0065653 Xpa protein_coding unknown_likely_coding MGP_AJ_T0065654.1 MGP_AJ_G0028213.1 mouse_genomes_project 4 42856029 42869253 - MGP_AJ_P0065654 Xpa protein_coding protein_coding MGP_AJ_T0065655.1 MGP_AJ_G0028213.1 mouse_genomes_project 4 42857472 42859637 - Xpa protein_coding processed_transcript MGP_AJ_T0014643.1 MGP_AJ_G0012738.1 mouse_genomes_project 4 85973470 85973963 - processed_pseudogene processed_pseudogene MGP_AJ_T0101806.1 MGP_AJ_G0039714.1 mouse_genomes_project 4 83644628 83658024 + transcribed_processed_pseudogene processed_transcript MGP_AJ_T0068978.1 MGP_AJ_G0028985.1 mouse_genomes_project 4 137248493 137388100 - MGP_AJ_P0068978 Arhgef10l protein_coding protein_coding MGP_AJ_T0068979.1 MGP_AJ_G0028985.1 mouse_genomes_project 4 137248493 137313136 - MGP_AJ_P0068979 Arhgef10l protein_coding nonsense_mediated_decay MGP_AJ_T0068980.1 MGP_AJ_G0028985.1 mouse_genomes_project 4 137248493 137407896 - MGP_AJ_P0068980 Arhgef10l protein_coding protein_coding MGP_AJ_T0068981.1 MGP_AJ_G0028985.1 mouse_genomes_project 4 137248493 137388106 - MGP_AJ_P0068981 Arhgef10l protein_coding protein_coding MGP_AJ_T0068982.1 MGP_AJ_G0028985.1 mouse_genomes_project 4 137248493 137320385 - MGP_AJ_P0068982 Arhgef10l protein_coding protein_coding MGP_AJ_T0068983.1 MGP_AJ_G0028985.1 mouse_genomes_project 4 137248493 137388100 - MGP_AJ_P0068983 Arhgef10l protein_coding protein_coding MGP_AJ_T0068984.1 MGP_AJ_G0028985.1 mouse_genomes_project 4 137248493 137317860 - MGP_AJ_P0068984 Arhgef10l protein_coding protein_coding MGP_AJ_T0068985.1 MGP_AJ_G0028985.1 mouse_genomes_project 4 137278786 137304402 - MGP_AJ_P0068985 Arhgef10l protein_coding nonsense_mediated_decay MGP_AJ_T0068986.1 MGP_AJ_G0028985.1 mouse_genomes_project 4 137311467 137317844 - MGP_AJ_P0068986 Arhgef10l protein_coding protein_coding MGP_AJ_T0068987.1 MGP_AJ_G0028985.1 mouse_genomes_project 4 137316906 137329914 - Arhgef10l protein_coding retained_intron MGP_AJ_T0068988.1 MGP_AJ_G0028985.1 mouse_genomes_project 4 137329805 137388710 - MGP_AJ_P0068988 Arhgef10l protein_coding protein_coding MGP_AJ_T0068989.1 MGP_AJ_G0028985.1 mouse_genomes_project 4 137331042 137355000 - MGP_AJ_P0068989 Arhgef10l protein_coding protein_coding MGP_AJ_T0066109.1 MGP_AJ_G0028343.1 mouse_genomes_project 4 67198878 67304956 - MGP_AJ_P0066109 Megf9 protein_coding protein_coding MGP_AJ_T0066110.1 MGP_AJ_G0028343.1 mouse_genomes_project 4 67233829 67305023 - MGP_AJ_P0066110 Megf9 protein_coding nonsense_mediated_decay MGP_AJ_T0068412.1 MGP_AJ_G0028850.1 mouse_genomes_project 4 129835692 129847640 - MGP_AJ_P0068412 Tmem222 protein_coding protein_coding MGP_AJ_T0068413.1 MGP_AJ_G0028850.1 mouse_genomes_project 4 129836477 129847510 - MGP_AJ_P0068413 Tmem222 protein_coding nonsense_mediated_decay MGP_AJ_T0068414.1 MGP_AJ_G0028850.1 mouse_genomes_project 4 129836523 129847618 - MGP_AJ_P0068414 Tmem222 protein_coding nonsense_mediated_decay MGP_AJ_T0068415.1 MGP_AJ_G0028850.1 mouse_genomes_project 4 129836534 129847466 - MGP_AJ_P0068415 Tmem222 protein_coding nonsense_mediated_decay MGP_AJ_T0068416.1 MGP_AJ_G0028850.1 mouse_genomes_project 4 129836549 129839754 - Tmem222 protein_coding retained_intron MGP_AJ_T0068417.1 MGP_AJ_G0028850.1 mouse_genomes_project 4 129840529 129847599 - Tmem222 protein_coding retained_intron MGP_AJ_T0101252.1 MGP_AJ_G0039218.1 mouse_genomes_project 4 123465449 123465579 - Gm24161 snoRNA snoRNA MGP_AJ_T0069934.1 MGP_AJ_G0029200.1 mouse_genomes_project 4 153483057 153487776 - MGP_AJ_P0069934 Cptp protein_coding protein_coding MGP_AJ_T0069935.1 MGP_AJ_G0029200.1 mouse_genomes_project 4 153483632 153487698 - Cptp protein_coding processed_transcript MGP_AJ_T0069936.1 MGP_AJ_G0029200.1 mouse_genomes_project 4 153484699 153487154 - MGP_AJ_P0069936 Cptp protein_coding protein_coding MGP_AJ_T0066680.1 MGP_AJ_G0028477.1 mouse_genomes_project 4 101834421 101911689 - MGP_AJ_P0066680 Prkaa2 protein_coding protein_coding MGP_AJ_T0014772.1 MGP_AJ_G0012867.1 mouse_genomes_project 4 123795011 123795221 - processed_pseudogene processed_pseudogene MGP_AJ_T0001434.1 MGP_AJ_G0001355.1 mouse_genomes_project 4 149540766 149543627 - TEC TEC MGP_AJ_T0004507.1 MGP_AJ_G0003915.1 mouse_genomes_project 4 106775985 106777060 - Dmrta2os antisense antisense MGP_AJ_T0004508.1 MGP_AJ_G0003915.1 mouse_genomes_project 4 106775994 106776738 - Dmrta2os antisense antisense MGP_AJ_T0064834.1 MGP_AJ_G0028039.1 mouse_genomes_project 4 16136542 16159976 + MGP_AJ_P0064834 Rmdn1 protein_coding protein_coding MGP_AJ_T0064835.1 MGP_AJ_G0028039.1 mouse_genomes_project 4 16136587 16168556 + MGP_AJ_P0064835 Rmdn1 protein_coding protein_coding MGP_AJ_T0004519.1 MGP_AJ_G0003925.1 mouse_genomes_project 4 114396985 114415930 + 9530034E10Rik antisense antisense MGP_AJ_T0098447.1 MGP_AJ_G0036431.1 mouse_genomes_project 4 33370833 33371171 - pseudogene pseudogene MGP_AJ_T0011558.1 MGP_AJ_G0009680.1 mouse_genomes_project 4 16075828 16076118 - Gm25655 misc_RNA misc_RNA MGP_AJ_T0065971.1 MGP_AJ_G0028305.1 mouse_genomes_project 4 58685703 58758627 - MGP_AJ_P0065971 protein_coding protein_coding MGP_AJ_T0065940.1 MGP_AJ_G0028296.1 mouse_genomes_project 4 55978262 55979546 - Susd1 protein_coding retained_intron MGP_AJ_T0065941.1 MGP_AJ_G0028296.1 mouse_genomes_project 4 55978262 56099881 - MGP_AJ_P0065941 Susd1 protein_coding protein_coding MGP_AJ_T0065942.1 MGP_AJ_G0028296.1 mouse_genomes_project 4 55978333 56099881 - MGP_AJ_P0065942 Susd1 protein_coding protein_coding MGP_AJ_T0065943.1 MGP_AJ_G0028296.1 mouse_genomes_project 4 55992783 55996545 - Susd1 protein_coding retained_intron MGP_AJ_T0065944.1 MGP_AJ_G0028296.1 mouse_genomes_project 4 55995479 56020997 - Susd1 protein_coding retained_intron MGP_AJ_T0064751.1 MGP_AJ_G0028012.1 mouse_genomes_project 4 8119832 8127756 + MGP_AJ_P0064751 Fsbp protein_coding protein_coding MGP_AJ_T0014417.1 MGP_AJ_G0012512.1 mouse_genomes_project 4 10171304 10172040 + processed_pseudogene processed_pseudogene MGP_AJ_T0067498.1 MGP_AJ_G0028647.1 mouse_genomes_project 4 115562525 115591790 + MGP_AJ_P0067498 Slc2a1 protein_coding protein_coding MGP_AJ_T0067499.1 MGP_AJ_G0028647.1 mouse_genomes_project 4 115562618 115586420 + MGP_AJ_P0067499 Slc2a1 protein_coding protein_coding MGP_AJ_T0067500.1 MGP_AJ_G0028647.1 mouse_genomes_project 4 115562673 115586392 + MGP_AJ_P0067500 Slc2a1 protein_coding protein_coding MGP_AJ_T0067501.1 MGP_AJ_G0028647.1 mouse_genomes_project 4 115562728 115591137 + MGP_AJ_P0067501 Slc2a1 protein_coding nonsense_mediated_decay MGP_AJ_T0014582.1 MGP_AJ_G0012677.1 mouse_genomes_project 4 63134503 63134841 + processed_pseudogene processed_pseudogene MGP_AJ_T0102600.1 MGP_AJ_G0040342.1 mouse_genomes_project 4 108891643 108914515 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0068551.1 MGP_AJ_G0028881.1 mouse_genomes_project 4 130867221 130879488 - MGP_AJ_P0068551 Pdik1l protein_coding protein_coding MGP_AJ_T0068552.1 MGP_AJ_G0028881.1 mouse_genomes_project 4 130867221 130880144 - MGP_AJ_P0068552 Pdik1l protein_coding protein_coding MGP_AJ_T0068553.1 MGP_AJ_G0028881.1 mouse_genomes_project 4 130867222 130879502 - MGP_AJ_P0068553 Pdik1l protein_coding protein_coding MGP_AJ_T0068554.1 MGP_AJ_G0028881.1 mouse_genomes_project 4 130870755 130879474 - MGP_AJ_P0068554 Pdik1l protein_coding protein_coding MGP_AJ_T0068555.1 MGP_AJ_G0028881.1 mouse_genomes_project 4 130871569 130879499 - MGP_AJ_P0068555 Pdik1l protein_coding protein_coding MGP_AJ_T0068556.1 MGP_AJ_G0028881.1 mouse_genomes_project 4 130875819 130879474 - Pdik1l protein_coding processed_transcript MGP_AJ_T0066378.1 MGP_AJ_G0028408.1 mouse_genomes_project 4 88920429 88923322 - MGP_AJ_P0066378 Izumo3 protein_coding protein_coding MGP_AJ_T0066379.1 MGP_AJ_G0028408.1 mouse_genomes_project 4 88920438 88923335 - MGP_AJ_P0066379 Izumo3 protein_coding protein_coding MGP_AJ_T0069681.1 MGP_AJ_G0029154.1 mouse_genomes_project 4 151623216 151628363 - MGP_AJ_P0069681 Smim1 protein_coding protein_coding MGP_AJ_T0069682.1 MGP_AJ_G0029154.1 mouse_genomes_project 4 151623334 151628659 - MGP_AJ_P0069682 Smim1 protein_coding protein_coding MGP_AJ_T0069683.1 MGP_AJ_G0029154.1 mouse_genomes_project 4 151623334 151628713 - MGP_AJ_P0069683 Smim1 protein_coding protein_coding MGP_AJ_T0069684.1 MGP_AJ_G0029154.1 mouse_genomes_project 4 151624202 151628977 - MGP_AJ_P0069684 Smim1 protein_coding protein_coding MGP_AJ_T0069685.1 MGP_AJ_G0029154.1 mouse_genomes_project 4 151624207 151628899 - MGP_AJ_P0069685 Smim1 protein_coding protein_coding MGP_AJ_T0069686.1 MGP_AJ_G0029154.1 mouse_genomes_project 4 151626056 151628683 - MGP_AJ_P0069686 Smim1 protein_coding protein_coding MGP_AJ_T0069687.1 MGP_AJ_G0029154.1 mouse_genomes_project 4 151626056 151628614 - MGP_AJ_P0069687 Smim1 protein_coding protein_coding MGP_AJ_T0069688.1 MGP_AJ_G0029154.1 mouse_genomes_project 4 151626056 151628363 - MGP_AJ_P0069688 Smim1 protein_coding protein_coding MGP_AJ_T0069689.1 MGP_AJ_G0029154.1 mouse_genomes_project 4 151626057 151627102 - MGP_AJ_P0069689 Smim1 protein_coding protein_coding MGP_AJ_T0069690.1 MGP_AJ_G0029154.1 mouse_genomes_project 4 151626057 151628897 - MGP_AJ_P0069690 Smim1 protein_coding protein_coding MGP_AJ_T0069691.1 MGP_AJ_G0029154.1 mouse_genomes_project 4 151626327 151628784 - MGP_AJ_P0069691 Smim1 protein_coding protein_coding MGP_AJ_T0069692.1 MGP_AJ_G0029154.1 mouse_genomes_project 4 151626445 151628410 - MGP_AJ_P0069692 Smim1 protein_coding protein_coding MGP_AJ_T0069693.1 MGP_AJ_G0029154.1 mouse_genomes_project 4 151626470 151627070 - MGP_AJ_P0069693 Smim1 protein_coding protein_coding MGP_AJ_T0069694.1 MGP_AJ_G0029154.1 mouse_genomes_project 4 151628052 151628659 - Smim1 protein_coding processed_transcript MGP_AJ_T0010566.1 MGP_AJ_G0008688.1 mouse_genomes_project 4 4236 4338 + Mir3471-2 miRNA miRNA MGP_AJ_T0001420.1 MGP_AJ_G0001343.1 mouse_genomes_project 4 119666938 119675595 - TEC TEC MGP_AJ_T0001421.1 MGP_AJ_G0001343.1 mouse_genomes_project 4 119669902 119675517 - TEC TEC MGP_AJ_T0014657.1 MGP_AJ_G0012752.1 mouse_genomes_project 4 90392823 90393133 + processed_pseudogene processed_pseudogene MGP_AJ_T0014755.1 MGP_AJ_G0012850.1 mouse_genomes_project 4 119463346 119463586 + processed_pseudogene processed_pseudogene MGP_AJ_T0011572.1 MGP_AJ_G0009694.1 mouse_genomes_project 4 82634716 82634993 + Gm26069 misc_RNA misc_RNA MGP_AJ_T0018027.1 MGP_AJ_G0015510.1 mouse_genomes_project 4 8517417 8545043 + 1700123M08Rik processed_transcript processed_transcript MGP_AJ_T0018028.1 MGP_AJ_G0015510.1 mouse_genomes_project 4 8517426 8544758 + 1700123M08Rik processed_transcript processed_transcript MGP_AJ_T0018029.1 MGP_AJ_G0015510.1 mouse_genomes_project 4 8531041 8532539 + 1700123M08Rik processed_transcript processed_transcript MGP_AJ_T0066304.1 MGP_AJ_G0028378.1 mouse_genomes_project 4 83802919 84057725 - MGP_AJ_P0066304 Slc24a2 protein_coding protein_coding MGP_AJ_T0066305.1 MGP_AJ_G0028378.1 mouse_genomes_project 4 83802924 84055210 - MGP_AJ_P0066305 Slc24a2 protein_coding protein_coding MGP_AJ_T0066306.1 MGP_AJ_G0028378.1 mouse_genomes_project 4 83810995 84055124 - MGP_AJ_P0066306 Slc24a2 protein_coding protein_coding MGP_AJ_T0066307.1 MGP_AJ_G0028378.1 mouse_genomes_project 4 83810995 84055120 - MGP_AJ_P0066307 Slc24a2 protein_coding protein_coding MGP_AJ_T0066308.1 MGP_AJ_G0028378.1 mouse_genomes_project 4 83815966 83831847 - Slc24a2 protein_coding processed_transcript MGP_AJ_T0066309.1 MGP_AJ_G0028378.1 mouse_genomes_project 4 83848772 83999992 - MGP_AJ_P0066309 Slc24a2 protein_coding protein_coding MGP_AJ_T0066310.1 MGP_AJ_G0028378.1 mouse_genomes_project 4 83892753 84057671 - Slc24a2 protein_coding processed_transcript MGP_AJ_T0066311.1 MGP_AJ_G0028378.1 mouse_genomes_project 4 83893141 84057670 - Slc24a2 protein_coding processed_transcript MGP_AJ_T0066312.1 MGP_AJ_G0028378.1 mouse_genomes_project 4 83999491 84057715 - Slc24a2 protein_coding processed_transcript MGP_AJ_T0007921.1 MGP_AJ_G0006474.1 mouse_genomes_project 4 102889856 102906164 - Gm12729 lincRNA lincRNA MGP_AJ_T0069237.1 MGP_AJ_G0029072.1 mouse_genomes_project 4 145266922 145274945 - MGP_AJ_P0069237 Miip protein_coding protein_coding MGP_AJ_T0069238.1 MGP_AJ_G0029072.1 mouse_genomes_project 4 145266930 145275042 - MGP_AJ_P0069238 Miip protein_coding protein_coding MGP_AJ_T0069239.1 MGP_AJ_G0029072.1 mouse_genomes_project 4 145266934 145268927 - Miip protein_coding retained_intron MGP_AJ_T0069240.1 MGP_AJ_G0029072.1 mouse_genomes_project 4 145266935 145274725 - Miip protein_coding retained_intron MGP_AJ_T0069241.1 MGP_AJ_G0029072.1 mouse_genomes_project 4 145266935 145274709 - MGP_AJ_P0069241 Miip protein_coding protein_coding MGP_AJ_T0069242.1 MGP_AJ_G0029072.1 mouse_genomes_project 4 145268964 145274892 - Miip protein_coding retained_intron MGP_AJ_T0069243.1 MGP_AJ_G0029072.1 mouse_genomes_project 4 145269717 145271763 - Miip protein_coding retained_intron MGP_AJ_T0069244.1 MGP_AJ_G0029072.1 mouse_genomes_project 4 145272348 145274749 - Miip protein_coding retained_intron MGP_AJ_T0069445.1 MGP_AJ_G0029112.1 mouse_genomes_project 4 147367366 147427305 - MGP_AJ_P0069445 Spsb1 protein_coding protein_coding MGP_AJ_T0069446.1 MGP_AJ_G0029112.1 mouse_genomes_project 4 147369050 147380900 - MGP_AJ_P0069446 Spsb1 protein_coding protein_coding MGP_AJ_T0069447.1 MGP_AJ_G0029112.1 mouse_genomes_project 4 147369297 147378373 - MGP_AJ_P0069447 Spsb1 protein_coding protein_coding MGP_AJ_T0069448.1 MGP_AJ_G0029112.1 mouse_genomes_project 4 147377590 147426067 - MGP_AJ_P0069448 Spsb1 protein_coding protein_coding MGP_AJ_T0069449.1 MGP_AJ_G0029112.1 mouse_genomes_project 4 147378074 147394175 - MGP_AJ_P0069449 Spsb1 protein_coding protein_coding MGP_AJ_T0069450.1 MGP_AJ_G0029112.1 mouse_genomes_project 4 147378078 147403703 - MGP_AJ_P0069450 Spsb1 protein_coding protein_coding MGP_AJ_T0069451.1 MGP_AJ_G0029112.1 mouse_genomes_project 4 147378083 147414808 - MGP_AJ_P0069451 Spsb1 protein_coding protein_coding MGP_AJ_T0069452.1 MGP_AJ_G0029112.1 mouse_genomes_project 4 147378132 147418436 - MGP_AJ_P0069452 Spsb1 protein_coding protein_coding MGP_AJ_T0069453.1 MGP_AJ_G0029112.1 mouse_genomes_project 4 147378225 147427305 - Spsb1 protein_coding processed_transcript MGP_AJ_T0069454.1 MGP_AJ_G0029112.1 mouse_genomes_project 4 147380648 147427293 - Spsb1 protein_coding processed_transcript MGP_AJ_T0066854.1 MGP_AJ_G0028509.1 mouse_genomes_project 4 104772535 104817430 + MGP_AJ_P0066854 Slc1a7 protein_coding protein_coding MGP_AJ_T0066855.1 MGP_AJ_G0028509.1 mouse_genomes_project 4 104813914 104817424 + Slc1a7 protein_coding retained_intron MGP_AJ_T0065837.1 MGP_AJ_G0028270.1 mouse_genomes_project 4 53383201 53384714 + MGP_AJ_P0065837 Actl7a protein_coding protein_coding MGP_AJ_T0007925.1 MGP_AJ_G0006477.1 mouse_genomes_project 4 103644737 103650916 - Gm12746 lincRNA lincRNA MGP_AJ_T0014625.1 MGP_AJ_G0012720.1 mouse_genomes_project 4 78443848 78444706 + processed_pseudogene processed_pseudogene MGP_AJ_T0068430.1 MGP_AJ_G0028855.1 mouse_genomes_project 4 130096353 130106154 + MGP_AJ_P0068430 Kdf1 protein_coding protein_coding MGP_AJ_T0068431.1 MGP_AJ_G0028855.1 mouse_genomes_project 4 130096382 130107963 + MGP_AJ_P0068431 Kdf1 protein_coding protein_coding MGP_AJ_T0068432.1 MGP_AJ_G0028855.1 mouse_genomes_project 4 130096413 130105877 + MGP_AJ_P0068432 Kdf1 protein_coding protein_coding MGP_AJ_T0068433.1 MGP_AJ_G0028855.1 mouse_genomes_project 4 130096445 130107958 + MGP_AJ_P0068433 Kdf1 protein_coding protein_coding MGP_AJ_T0068434.1 MGP_AJ_G0028855.1 mouse_genomes_project 4 130096473 130107960 + MGP_AJ_P0068434 Kdf1 protein_coding protein_coding MGP_AJ_T0099978.1 MGP_AJ_G0037944.1 mouse_genomes_project 4 145989521 145989629 + Gm23318 snRNA snRNA MGP_AJ_T0014538.1 MGP_AJ_G0012633.1 mouse_genomes_project 4 46020997 46021328 + processed_pseudogene processed_pseudogene MGP_AJ_T0067788.1 MGP_AJ_G0028721.1 mouse_genomes_project 4 121656730 121668507 - MGP_AJ_P0067788 Dnali1 protein_coding protein_coding MGP_AJ_T0066671.1 MGP_AJ_G0028473.1 mouse_genomes_project 4 101571144 101609554 + MGP_AJ_P0066671 C8b protein_coding protein_coding MGP_AJ_T0066672.1 MGP_AJ_G0028473.1 mouse_genomes_project 4 101571217 101609565 + MGP_AJ_P0066672 C8b protein_coding protein_coding MGP_AJ_T0066673.1 MGP_AJ_G0028473.1 mouse_genomes_project 4 101604601 101609934 + C8b protein_coding processed_transcript MGP_AJ_T0014814.1 MGP_AJ_G0012909.1 mouse_genomes_project 4 140228172 140228930 + processed_pseudogene processed_pseudogene MGP_AJ_T0101251.1 MGP_AJ_G0039217.1 mouse_genomes_project 4 119869146 119869277 + Gm22154 snoRNA snoRNA MGP_AJ_T0065954.1 MGP_AJ_G0028298.1 mouse_genomes_project 4 56241170 56279940 + MGP_AJ_P0065954 Hsdl2 protein_coding protein_coding MGP_AJ_T0065955.1 MGP_AJ_G0028298.1 mouse_genomes_project 4 56241252 56279939 + MGP_AJ_P0065955 Hsdl2 protein_coding protein_coding MGP_AJ_T0065956.1 MGP_AJ_G0028298.1 mouse_genomes_project 4 56253907 56261048 + MGP_AJ_P0065956 Hsdl2 protein_coding protein_coding MGP_AJ_T0067895.1 MGP_AJ_G0028747.1 mouse_genomes_project 4 123402759 123440645 + MGP_AJ_P0067895 AU040320 protein_coding protein_coding MGP_AJ_T0067896.1 MGP_AJ_G0028747.1 mouse_genomes_project 4 123402768 123440756 + MGP_AJ_P0067896 AU040320 protein_coding protein_coding MGP_AJ_T0067897.1 MGP_AJ_G0028747.1 mouse_genomes_project 4 123402770 123520350 + MGP_AJ_P0067897 AU040320 protein_coding protein_coding MGP_AJ_T0067898.1 MGP_AJ_G0028747.1 mouse_genomes_project 4 123402985 123504610 + MGP_AJ_P0067898 AU040320 protein_coding protein_coding MGP_AJ_T0067899.1 MGP_AJ_G0028747.1 mouse_genomes_project 4 123402985 123520350 + MGP_AJ_P0067899 AU040320 protein_coding protein_coding MGP_AJ_T0067900.1 MGP_AJ_G0028747.1 mouse_genomes_project 4 123403009 123440659 + MGP_AJ_P0067900 AU040320 protein_coding protein_coding MGP_AJ_T0067901.1 MGP_AJ_G0028747.1 mouse_genomes_project 4 123403029 123437085 + AU040320 protein_coding processed_transcript MGP_AJ_T0067902.1 MGP_AJ_G0028747.1 mouse_genomes_project 4 123403041 123403949 + AU040320 protein_coding processed_transcript MGP_AJ_T0067903.1 MGP_AJ_G0028747.1 mouse_genomes_project 4 123463696 123480947 + AU040320 protein_coding processed_transcript MGP_AJ_T0067904.1 MGP_AJ_G0028747.1 mouse_genomes_project 4 123484127 123488770 + AU040320 protein_coding processed_transcript MGP_AJ_T0067905.1 MGP_AJ_G0028747.1 mouse_genomes_project 4 123500127 123503825 + AU040320 protein_coding processed_transcript MGP_AJ_T0065926.1 MGP_AJ_G0028290.1 mouse_genomes_project 4 55615814 55637530 - MGP_AJ_P0065926 Ptgr1 protein_coding protein_coding MGP_AJ_T0065021.1 MGP_AJ_G0028086.1 mouse_genomes_project 4 31031623 31076795 + MGP_AJ_P0065021 Rars2 protein_coding protein_coding MGP_AJ_T0065022.1 MGP_AJ_G0028086.1 mouse_genomes_project 4 31031627 31035572 + Rars2 protein_coding processed_transcript MGP_AJ_T0065023.1 MGP_AJ_G0028086.1 mouse_genomes_project 4 31031635 31042049 + Rars2 protein_coding processed_transcript MGP_AJ_T0065024.1 MGP_AJ_G0028086.1 mouse_genomes_project 4 31031640 31076791 + Rars2 protein_coding processed_transcript MGP_AJ_T0065025.1 MGP_AJ_G0028086.1 mouse_genomes_project 4 31031642 31047174 + MGP_AJ_P0065025 Rars2 protein_coding protein_coding MGP_AJ_T0065026.1 MGP_AJ_G0028086.1 mouse_genomes_project 4 31031644 31040041 + Rars2 protein_coding processed_transcript MGP_AJ_T0065027.1 MGP_AJ_G0028086.1 mouse_genomes_project 4 31064335 31072789 + Rars2 protein_coding processed_transcript MGP_AJ_T0066696.1 MGP_AJ_G0028485.1 mouse_genomes_project 4 103427795 103445503 + MGP_AJ_P0066696 Ttc22 protein_coding protein_coding MGP_AJ_T0066697.1 MGP_AJ_G0028485.1 mouse_genomes_project 4 103441287 103442942 + Ttc22 protein_coding processed_transcript MGP_AJ_T0066552.1 MGP_AJ_G0028450.1 mouse_genomes_project 4 97230669 97300739 + MGP_AJ_P0066552 Ube2u protein_coding protein_coding MGP_AJ_T0066553.1 MGP_AJ_G0028450.1 mouse_genomes_project 4 97230687 97300737 + MGP_AJ_P0066553 Ube2u protein_coding protein_coding MGP_AJ_T0018037.1 MGP_AJ_G0015516.1 mouse_genomes_project 4 29717198 29723758 - Gm11934 processed_transcript processed_transcript MGP_AJ_T0067782.1 MGP_AJ_G0028720.1 mouse_genomes_project 4 121617157 121637641 + MGP_AJ_P0067782 Gnl2 protein_coding protein_coding MGP_AJ_T0067783.1 MGP_AJ_G0028720.1 mouse_genomes_project 4 121630488 121656769 + MGP_AJ_P0067783 Gnl2 protein_coding protein_coding MGP_AJ_T0067784.1 MGP_AJ_G0028720.1 mouse_genomes_project 4 121630554 121642642 + Gnl2 protein_coding processed_transcript MGP_AJ_T0067785.1 MGP_AJ_G0028720.1 mouse_genomes_project 4 121642355 121644318 + Gnl2 protein_coding processed_transcript MGP_AJ_T0067786.1 MGP_AJ_G0028720.1 mouse_genomes_project 4 121644629 121647662 + Gnl2 protein_coding processed_transcript MGP_AJ_T0067787.1 MGP_AJ_G0028720.1 mouse_genomes_project 4 121654543 121656773 + Gnl2 protein_coding processed_transcript MGP_AJ_T0065646.1 MGP_AJ_G0028212.1 mouse_genomes_project 4 42811759 42845466 + MGP_AJ_P0065646 Ncbp1 protein_coding protein_coding MGP_AJ_T0065648.1 MGP_AJ_G0028212.1 mouse_genomes_project 4 42830969 42833163 + Ncbp1 protein_coding processed_transcript MGP_AJ_T0065649.1 MGP_AJ_G0028212.1 mouse_genomes_project 4 42838260 42845042 + Ncbp1 protein_coding processed_transcript MGP_AJ_T0102586.1 MGP_AJ_G0040328.1 mouse_genomes_project 4 60110033 60128872 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0065140.1 MGP_AJ_G0028115.1 mouse_genomes_project 4 37641645 37723025 - MGP_AJ_P0065140 Ubap2 protein_coding protein_coding MGP_AJ_T0065141.1 MGP_AJ_G0028115.1 mouse_genomes_project 4 37641648 37723016 - MGP_AJ_P0065141 Ubap2 protein_coding protein_coding MGP_AJ_T0065142.1 MGP_AJ_G0028115.1 mouse_genomes_project 4 37642525 37643098 - MGP_AJ_P0065142 Ubap2 protein_coding protein_coding MGP_AJ_T0065143.1 MGP_AJ_G0028115.1 mouse_genomes_project 4 37646550 37647410 - Ubap2 protein_coding processed_transcript MGP_AJ_T0065144.1 MGP_AJ_G0028115.1 mouse_genomes_project 4 37654226 37661161 - MGP_AJ_P0065144 Ubap2 protein_coding protein_coding MGP_AJ_T0065145.1 MGP_AJ_G0028115.1 mouse_genomes_project 4 37668889 37698917 - MGP_AJ_P0065145 Ubap2 protein_coding protein_coding MGP_AJ_T0065146.1 MGP_AJ_G0028115.1 mouse_genomes_project 4 37668892 37722997 - Ubap2 protein_coding processed_transcript MGP_AJ_T0065147.1 MGP_AJ_G0028115.1 mouse_genomes_project 4 37721946 37723008 - Ubap2 protein_coding processed_transcript MGP_AJ_T0067019.1 MGP_AJ_G0028540.1 mouse_genomes_project 4 107197460 107750043 + MGP_AJ_P0067019 Agbl4 protein_coding protein_coding MGP_AJ_T0067020.1 MGP_AJ_G0028540.1 mouse_genomes_project 4 107197497 108435013 + MGP_AJ_P0067020 Agbl4 protein_coding protein_coding MGP_AJ_T0067021.1 MGP_AJ_G0028540.1 mouse_genomes_project 4 107197497 108342522 + MGP_AJ_P0067021 Agbl4 protein_coding protein_coding MGP_AJ_T0067022.1 MGP_AJ_G0028540.1 mouse_genomes_project 4 107197497 107442630 + MGP_AJ_P0067022 Agbl4 protein_coding protein_coding MGP_AJ_T0067023.1 MGP_AJ_G0028540.1 mouse_genomes_project 4 107197590 108428283 + MGP_AJ_P0067023 Agbl4 protein_coding protein_coding MGP_AJ_T0067024.1 MGP_AJ_G0028540.1 mouse_genomes_project 4 107197590 108428283 + MGP_AJ_P0067024 Agbl4 protein_coding protein_coding MGP_AJ_T0067025.1 MGP_AJ_G0028540.1 mouse_genomes_project 4 107904046 108026800 + Agbl4 protein_coding processed_transcript MGP_AJ_T0067026.1 MGP_AJ_G0028540.1 mouse_genomes_project 4 107904116 108390558 + MGP_AJ_P0067026 Agbl4 protein_coding protein_coding MGP_AJ_T0067033.1 MGP_AJ_G0028540.1 mouse_genomes_project 4 108342206 108427342 + Agbl4 protein_coding processed_transcript MGP_AJ_T0067034.1 MGP_AJ_G0028540.1 mouse_genomes_project 4 108342236 108428280 + Agbl4 protein_coding processed_transcript MGP_AJ_T0068264.1 MGP_AJ_G0028819.1 mouse_genomes_project 4 128466967 128468337 + MGP_AJ_P0068264 Tmem200b protein_coding protein_coding MGP_AJ_T0018021.1 MGP_AJ_G0015508.1 mouse_genomes_project 4 700788 741029 + A830012C17Rik processed_transcript processed_transcript MGP_AJ_T0004514.1 MGP_AJ_G0003921.1 mouse_genomes_project 4 113406358 113407205 - 1700021J08Rik antisense antisense MGP_AJ_T0069725.1 MGP_AJ_G0029161.1 mouse_genomes_project 4 151923523 152247713 - Prdm16 protein_coding processed_transcript MGP_AJ_T0069726.1 MGP_AJ_G0029161.1 mouse_genomes_project 4 151923523 152247713 - MGP_AJ_P0069726 Prdm16 protein_coding protein_coding MGP_AJ_T0069727.1 MGP_AJ_G0029161.1 mouse_genomes_project 4 151923523 152247713 - MGP_AJ_P0069727 Prdm16 protein_coding protein_coding MGP_AJ_T0069728.1 MGP_AJ_G0029161.1 mouse_genomes_project 4 151923523 152247713 - MGP_AJ_P0069728 Prdm16 protein_coding protein_coding MGP_AJ_T0069729.1 MGP_AJ_G0029161.1 mouse_genomes_project 4 151923523 152247713 - MGP_AJ_P0069729 Prdm16 protein_coding protein_coding MGP_AJ_T0069730.1 MGP_AJ_G0029161.1 mouse_genomes_project 4 151923523 152247713 - MGP_AJ_P0069730 Prdm16 protein_coding protein_coding MGP_AJ_T0069731.1 MGP_AJ_G0029161.1 mouse_genomes_project 4 151923523 152247713 - MGP_AJ_P0069731 Prdm16 protein_coding protein_coding MGP_AJ_T0069732.1 MGP_AJ_G0029161.1 mouse_genomes_project 4 151930789 151942332 - Prdm16 protein_coding processed_transcript MGP_AJ_T0069733.1 MGP_AJ_G0029161.1 mouse_genomes_project 4 151935700 151942402 - Prdm16 protein_coding processed_transcript MGP_AJ_T0069735.1 MGP_AJ_G0029161.1 mouse_genomes_project 4 151953600 151955919 - Prdm16 protein_coding processed_transcript MGP_AJ_T0069736.1 MGP_AJ_G0029161.1 mouse_genomes_project 4 151962753 152247720 - MGP_AJ_P0069736 Prdm16 protein_coding protein_coding MGP_AJ_T0069737.1 MGP_AJ_G0029161.1 mouse_genomes_project 4 152084435 152137702 - Prdm16 protein_coding processed_transcript MGP_AJ_T0069738.1 MGP_AJ_G0029161.1 mouse_genomes_project 4 152084466 152247644 - Prdm16 protein_coding processed_transcript MGP_AJ_T0014399.1 MGP_AJ_G0012494.1 mouse_genomes_project 4 4943985 4944317 - processed_pseudogene processed_pseudogene MGP_AJ_T0069706.1 MGP_AJ_G0029158.1 mouse_genomes_project 4 151761402 151764584 - MGP_AJ_P0069706 Tprgl protein_coding protein_coding MGP_AJ_T0069707.1 MGP_AJ_G0029158.1 mouse_genomes_project 4 151762057 151764584 - Tprgl protein_coding processed_transcript MGP_AJ_T0069708.1 MGP_AJ_G0029158.1 mouse_genomes_project 4 151762273 151764550 - MGP_AJ_P0069708 Tprgl protein_coding protein_coding MGP_AJ_T0069709.1 MGP_AJ_G0029158.1 mouse_genomes_project 4 151762390 151764084 - Tprgl protein_coding processed_transcript MGP_AJ_T0069710.1 MGP_AJ_G0029158.1 mouse_genomes_project 4 151763484 151764524 - Tprgl protein_coding processed_transcript MGP_AJ_T0066012.1 MGP_AJ_G0028318.1 mouse_genomes_project 4 59281412 59284375 - MGP_AJ_P0066012 Pole3 protein_coding protein_coding MGP_AJ_T0066013.1 MGP_AJ_G0028318.1 mouse_genomes_project 4 59281412 59284375 - MGP_AJ_P0066013 Pole3 protein_coding nonsense_mediated_decay MGP_AJ_T0066014.1 MGP_AJ_G0028318.1 mouse_genomes_project 4 59283641 59284345 - Pole3 protein_coding retained_intron MGP_AJ_T0007849.1 MGP_AJ_G0006415.1 mouse_genomes_project 4 48605942 48693717 - C630028M04Rik lincRNA lincRNA MGP_AJ_T0010602.1 MGP_AJ_G0008724.1 mouse_genomes_project 4 95396638 95396734 + Gm26154 miRNA miRNA MGP_AJ_T0098449.1 MGP_AJ_G0036433.1 mouse_genomes_project 4 95486332 95486420 + pseudogene pseudogene MGP_AJ_T0014624.1 MGP_AJ_G0012719.1 mouse_genomes_project 4 78196042 78202084 - processed_pseudogene processed_pseudogene MGP_AJ_T0066582.1 MGP_AJ_G0028458.1 mouse_genomes_project 4 98469343 98554412 + MGP_AJ_P0066582 Lepr protein_coding protein_coding MGP_AJ_T0066583.1 MGP_AJ_G0028458.1 mouse_genomes_project 4 98469343 98556097 + MGP_AJ_P0066583 Lepr protein_coding protein_coding MGP_AJ_T0066584.1 MGP_AJ_G0028458.1 mouse_genomes_project 4 98469343 98539103 + MGP_AJ_P0066584 Lepr protein_coding protein_coding MGP_AJ_T0066585.1 MGP_AJ_G0028458.1 mouse_genomes_project 4 98469346 98484576 + MGP_AJ_P0066585 Lepr protein_coding protein_coding MGP_AJ_T0066586.1 MGP_AJ_G0028458.1 mouse_genomes_project 4 98513192 98524125 + Lepr protein_coding processed_transcript MGP_AJ_T0066587.1 MGP_AJ_G0028458.1 mouse_genomes_project 4 98516567 98527427 + Lepr protein_coding processed_transcript MGP_AJ_T0066588.1 MGP_AJ_G0028458.1 mouse_genomes_project 4 98535798 98539001 + Lepr protein_coding processed_transcript MGP_AJ_T0014435.1 MGP_AJ_G0012530.1 mouse_genomes_project 4 14557557 14558567 - processed_pseudogene processed_pseudogene MGP_AJ_T0064704.1 MGP_AJ_G0028004.1 mouse_genomes_project 4 7568261 7591920 - MGP_AJ_P0064704 Ndufaf6 protein_coding protein_coding MGP_AJ_T0064705.1 MGP_AJ_G0028004.1 mouse_genomes_project 4 7568266 7574324 - Ndufaf6 protein_coding processed_transcript MGP_AJ_T0064706.1 MGP_AJ_G0028004.1 mouse_genomes_project 4 7568429 7591865 - Ndufaf6 protein_coding processed_transcript MGP_AJ_T0064707.1 MGP_AJ_G0028004.1 mouse_genomes_project 4 7574313 7591865 - Ndufaf6 protein_coding processed_transcript MGP_AJ_T0064708.1 MGP_AJ_G0028004.1 mouse_genomes_project 4 7577293 7591899 - Ndufaf6 protein_coding processed_transcript MGP_AJ_T0064709.1 MGP_AJ_G0028004.1 mouse_genomes_project 4 7585953 7591921 - Ndufaf6 protein_coding processed_transcript MGP_AJ_T0064710.1 MGP_AJ_G0028004.1 mouse_genomes_project 4 7588707 7591904 - Ndufaf6 protein_coding processed_transcript MGP_AJ_T0004569.1 MGP_AJ_G0003966.1 mouse_genomes_project 4 137877444 137879872 + 4921514A10Rik antisense antisense MGP_AJ_T0008010.1 MGP_AJ_G0006533.1 mouse_genomes_project 4 134914259 134914735 + 2310026L22Rik lincRNA lincRNA MGP_AJ_T0068376.1 MGP_AJ_G0028843.1 mouse_genomes_project 4 129546279 129557152 + Fgr protein_coding processed_transcript MGP_AJ_T0068377.1 MGP_AJ_G0028843.1 mouse_genomes_project 4 129546286 129576540 + MGP_AJ_P0068377 Fgr protein_coding protein_coding MGP_AJ_T0068378.1 MGP_AJ_G0028843.1 mouse_genomes_project 4 129549320 129575397 + Fgr protein_coding processed_transcript MGP_AJ_T0099920.1 MGP_AJ_G0037886.1 mouse_genomes_project 4 54535381 54535488 - Gm26138 snRNA snRNA MGP_AJ_T0010639.1 MGP_AJ_G0008761.1 mouse_genomes_project 4 136310499 136310582 - Gm25571 miRNA miRNA MGP_AJ_T0066890.1 MGP_AJ_G0028515.1 mouse_genomes_project 4 105132829 105147680 + MGP_AJ_P0066890 Coa7 protein_coding protein_coding MGP_AJ_T0066891.1 MGP_AJ_G0028515.1 mouse_genomes_project 4 105132842 105144587 + Coa7 protein_coding processed_transcript MGP_AJ_T0066892.1 MGP_AJ_G0028515.1 mouse_genomes_project 4 105132845 105144819 + Coa7 protein_coding processed_transcript MGP_AJ_T0066893.1 MGP_AJ_G0028515.1 mouse_genomes_project 4 105132867 105144314 + Coa7 protein_coding processed_transcript MGP_AJ_T0066894.1 MGP_AJ_G0028515.1 mouse_genomes_project 4 105132878 105137328 + Coa7 protein_coding processed_transcript MGP_AJ_T0066549.1 MGP_AJ_G0028448.1 mouse_genomes_project 4 96672015 96734787 + MGP_AJ_P0066549 Pgm2 protein_coding protein_coding MGP_AJ_T0066550.1 MGP_AJ_G0028448.1 mouse_genomes_project 4 96699093 96734787 + MGP_AJ_P0066550 Pgm2 protein_coding protein_coding MGP_AJ_T0102599.1 MGP_AJ_G0040341.1 mouse_genomes_project 4 98621346 98621619 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0068664.1 MGP_AJ_G0028905.1 mouse_genomes_project 4 132154254 132185955 - MGP_AJ_P0068664 Grhl3 protein_coding protein_coding MGP_AJ_T0099948.1 MGP_AJ_G0037914.1 mouse_genomes_project 4 113310244 113310349 + Gm26355 snRNA snRNA MGP_AJ_T0066352.1 MGP_AJ_G0028398.1 mouse_genomes_project 4 85632122 85632805 + MGP_AJ_P0066352 Ifna6 protein_coding protein_coding MGP_AJ_T0065073.1 MGP_AJ_G0028098.1 mouse_genomes_project 4 36577233 36640798 + MGP_AJ_P0065073 Aco1 protein_coding protein_coding MGP_AJ_T0065074.1 MGP_AJ_G0028098.1 mouse_genomes_project 4 36597845 36603477 + Aco1 protein_coding processed_transcript MGP_AJ_T0065075.1 MGP_AJ_G0028098.1 mouse_genomes_project 4 36600993 36618280 + Aco1 protein_coding processed_transcript MGP_AJ_T0065076.1 MGP_AJ_G0028098.1 mouse_genomes_project 4 36632943 36638864 + Aco1 protein_coding processed_transcript MGP_AJ_T0065267.1 MGP_AJ_G0028148.1 mouse_genomes_project 4 39505911 39512111 - MGP_AJ_P0065267 Fam205c protein_coding protein_coding MGP_AJ_T0065268.1 MGP_AJ_G0028148.1 mouse_genomes_project 4 39506110 39512103 - MGP_AJ_P0065268 Fam205c protein_coding protein_coding MGP_AJ_T0065269.1 MGP_AJ_G0028148.1 mouse_genomes_project 4 39509407 39511629 - Fam205c protein_coding processed_transcript MGP_AJ_T0065270.1 MGP_AJ_G0028148.1 mouse_genomes_project 4 39509595 39512142 - Fam205c protein_coding processed_transcript MGP_AJ_T0018083.1 MGP_AJ_G0015548.1 mouse_genomes_project 4 115418111 115448803 + Gm12861 processed_transcript processed_transcript MGP_AJ_T0065817.1 MGP_AJ_G0028262.1 mouse_genomes_project 4 50347488 50395999 + MGP_AJ_P0065817 Fktn protein_coding nonsense_mediated_decay MGP_AJ_T0065818.1 MGP_AJ_G0028262.1 mouse_genomes_project 4 50347853 50398960 + MGP_AJ_P0065818 Fktn protein_coding protein_coding MGP_AJ_T0014777.1 MGP_AJ_G0012872.1 mouse_genomes_project 4 126445720 126446008 - processed_pseudogene processed_pseudogene MGP_AJ_T0065260.1 MGP_AJ_G0028143.1 mouse_genomes_project 4 38253674 39337877 - protein_coding processed_transcript MGP_AJ_T0065261.1 MGP_AJ_G0028143.1 mouse_genomes_project 4 38253674 39337843 - MGP_AJ_P0065261 protein_coding protein_coding MGP_AJ_T0067365.1 MGP_AJ_G0028612.1 mouse_genomes_project 4 113973215 114098558 + MGP_AJ_P0067365 Eri3 protein_coding protein_coding MGP_AJ_T0067366.1 MGP_AJ_G0028612.1 mouse_genomes_project 4 113975450 114005718 + MGP_AJ_P0067366 Eri3 protein_coding protein_coding MGP_AJ_T0067367.1 MGP_AJ_G0028612.1 mouse_genomes_project 4 113987788 114098558 + Eri3 protein_coding processed_transcript MGP_AJ_T0067368.1 MGP_AJ_G0028612.1 mouse_genomes_project 4 114005687 114038747 + MGP_AJ_P0067368 Eri3 protein_coding protein_coding MGP_AJ_T0067369.1 MGP_AJ_G0028612.1 mouse_genomes_project 4 114012098 114038406 + Eri3 protein_coding processed_transcript MGP_AJ_T0067370.1 MGP_AJ_G0028612.1 mouse_genomes_project 4 114061336 114098542 + Eri3 protein_coding processed_transcript MGP_AJ_T0066926.1 MGP_AJ_G0028522.1 mouse_genomes_project 4 105447662 105584333 - MGP_AJ_P0066926 protein_coding protein_coding MGP_AJ_T0066927.1 MGP_AJ_G0028522.1 mouse_genomes_project 4 105447662 105584618 - MGP_AJ_P0066927 protein_coding protein_coding MGP_AJ_T0066928.1 MGP_AJ_G0028522.1 mouse_genomes_project 4 105449453 105527219 - MGP_AJ_P0066928 protein_coding protein_coding MGP_AJ_T0065740.1 MGP_AJ_G0028236.1 mouse_genomes_project 4 45269996 45350419 + MGP_AJ_P0065740 Tmeff1 protein_coding protein_coding MGP_AJ_T0065741.1 MGP_AJ_G0028236.1 mouse_genomes_project 4 45270187 45349373 + MGP_AJ_P0065741 Tmeff1 protein_coding protein_coding MGP_AJ_T0065742.1 MGP_AJ_G0028236.1 mouse_genomes_project 4 45270373 45349758 + MGP_AJ_P0065742 Tmeff1 protein_coding protein_coding MGP_AJ_T0065743.1 MGP_AJ_G0028236.1 mouse_genomes_project 4 45324238 45347527 + MGP_AJ_P0065743 Tmeff1 protein_coding protein_coding MGP_AJ_T0069925.1 MGP_AJ_G0029198.1 mouse_genomes_project 4 153465417 153477667 + MGP_AJ_P0069925 Dvl1 protein_coding protein_coding MGP_AJ_T0069926.1 MGP_AJ_G0029198.1 mouse_genomes_project 4 153465476 153477242 + MGP_AJ_P0069926 Dvl1 protein_coding protein_coding MGP_AJ_T0069927.1 MGP_AJ_G0029198.1 mouse_genomes_project 4 153465481 153477666 + Dvl1 protein_coding retained_intron MGP_AJ_T0069928.1 MGP_AJ_G0029198.1 mouse_genomes_project 4 153465581 153477667 + Dvl1 protein_coding retained_intron MGP_AJ_T0069929.1 MGP_AJ_G0029198.1 mouse_genomes_project 4 153465601 153477667 + Dvl1 protein_coding retained_intron MGP_AJ_T0069930.1 MGP_AJ_G0029198.1 mouse_genomes_project 4 153465686 153477667 + Dvl1 protein_coding retained_intron MGP_AJ_T0069931.1 MGP_AJ_G0029198.1 mouse_genomes_project 4 153471775 153472317 + Dvl1 protein_coding processed_transcript MGP_AJ_T0069932.1 MGP_AJ_G0029198.1 mouse_genomes_project 4 153472936 153474596 + Dvl1 protein_coding retained_intron MGP_AJ_T0064846.1 MGP_AJ_G0028045.1 mouse_genomes_project 4 16596831 16623362 + MGP_AJ_P0064846 Ggh protein_coding protein_coding MGP_AJ_T0066497.1 MGP_AJ_G0028437.1 mouse_genomes_project 4 95496093 95561844 - MGP_AJ_P0066497 Kank4 protein_coding protein_coding MGP_AJ_T0066498.1 MGP_AJ_G0028437.1 mouse_genomes_project 4 95497500 95512828 - Kank4 protein_coding processed_transcript MGP_AJ_T0066447.1 MGP_AJ_G0028423.1 mouse_genomes_project 4 92814644 92858785 - MGP_AJ_P0066447 Cyp2j12 protein_coding nonsense_mediated_decay MGP_AJ_T0066448.1 MGP_AJ_G0028423.1 mouse_genomes_project 4 92814901 92858771 - MGP_AJ_P0066448 Cyp2j12 protein_coding protein_coding MGP_AJ_T0101238.1 MGP_AJ_G0039204.1 mouse_genomes_project 4 100386893 100387022 - Gm25877 snoRNA snoRNA MGP_AJ_T0014841.1 MGP_AJ_G0012936.1 mouse_genomes_project 4 153120982 153121373 - processed_pseudogene processed_pseudogene MGP_AJ_T0010570.1 MGP_AJ_G0008692.1 mouse_genomes_project 4 7649962 7650048 + Mir684-2 miRNA miRNA MGP_AJ_T0010626.1 MGP_AJ_G0008748.1 mouse_genomes_project 4 129943086 129943175 + Mir5122 miRNA miRNA MGP_AJ_T0011566.1 MGP_AJ_G0009688.1 mouse_genomes_project 4 48198703 48198972 + Gm22563 misc_RNA misc_RNA MGP_AJ_T0101805.1 MGP_AJ_G0039713.1 mouse_genomes_project 4 83183818 83188639 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0004583.1 MGP_AJ_G0003975.1 mouse_genomes_project 4 138966758 138970305 + Gm13062 antisense antisense MGP_AJ_T0010617.1 MGP_AJ_G0008739.1 mouse_genomes_project 4 123203253 123203312 + Mir7119 miRNA miRNA MGP_AJ_T0069444.1 MGP_AJ_G0029111.1 mouse_genomes_project 4 147209460 147244455 - MGP_AJ_P0069444 Slc25a33 protein_coding protein_coding MGP_AJ_T0014391.1 MGP_AJ_G0012486.1 mouse_genomes_project 4 2146779 2147251 - processed_pseudogene processed_pseudogene MGP_AJ_T0069506.1 MGP_AJ_G0029124.1 mouse_genomes_project 4 148424259 149385194 - MGP_AJ_P0069506 Camta1 protein_coding protein_coding MGP_AJ_T0069524.1 MGP_AJ_G0029124.1 mouse_genomes_project 4 148570825 149385401 - MGP_AJ_P0069524 Camta1 protein_coding protein_coding MGP_AJ_T0069525.1 MGP_AJ_G0029124.1 mouse_genomes_project 4 148570826 149385271 - MGP_AJ_P0069525 Camta1 protein_coding protein_coding MGP_AJ_T0069526.1 MGP_AJ_G0029124.1 mouse_genomes_project 4 148570826 148591094 - MGP_AJ_P0069526 Camta1 protein_coding protein_coding MGP_AJ_T0069527.1 MGP_AJ_G0029124.1 mouse_genomes_project 4 148571114 148640940 - MGP_AJ_P0069527 Camta1 protein_coding protein_coding MGP_AJ_T0069528.1 MGP_AJ_G0029124.1 mouse_genomes_project 4 148571114 148619970 - MGP_AJ_P0069528 Camta1 protein_coding protein_coding MGP_AJ_T0069529.1 MGP_AJ_G0029124.1 mouse_genomes_project 4 148597396 148651226 - Camta1 protein_coding processed_transcript MGP_AJ_T0069530.1 MGP_AJ_G0029124.1 mouse_genomes_project 4 148597481 148619697 - MGP_AJ_P0069530 Camta1 protein_coding protein_coding MGP_AJ_T0069532.1 MGP_AJ_G0029124.1 mouse_genomes_project 4 148990152 149385175 - Camta1 protein_coding processed_transcript MGP_AJ_T0069533.1 MGP_AJ_G0029124.1 mouse_genomes_project 4 149313764 149385229 - Camta1 protein_coding processed_transcript MGP_AJ_T0069534.1 MGP_AJ_G0029124.1 mouse_genomes_project 4 149315428 149385263 - Camta1 protein_coding processed_transcript MGP_AJ_T0069535.1 MGP_AJ_G0029124.1 mouse_genomes_project 4 149315692 149385194 - MGP_AJ_P0069535 Camta1 protein_coding unknown_likely_coding MGP_AJ_T0014744.1 MGP_AJ_G0012839.1 mouse_genomes_project 4 116015312 116015714 - processed_pseudogene processed_pseudogene MGP_AJ_T0064596.1 MGP_AJ_G0027983.1 mouse_genomes_project 4 428472 429921 - MGP_AJ_P0064596 Mos protein_coding protein_coding MGP_AJ_T0066794.1 MGP_AJ_G0028501.1 mouse_genomes_project 4 104124556 104170491 + MGP_AJ_P0066794 Yipf1 protein_coding protein_coding MGP_AJ_T0066795.1 MGP_AJ_G0028501.1 mouse_genomes_project 4 104124562 104131483 + Yipf1 protein_coding processed_transcript MGP_AJ_T0066796.1 MGP_AJ_G0028501.1 mouse_genomes_project 4 104124577 104161429 + MGP_AJ_P0066796 Yipf1 protein_coding protein_coding MGP_AJ_T0066797.1 MGP_AJ_G0028501.1 mouse_genomes_project 4 104124605 104156076 + MGP_AJ_P0066797 Yipf1 protein_coding protein_coding MGP_AJ_T0066798.1 MGP_AJ_G0028501.1 mouse_genomes_project 4 104124630 104129063 + MGP_AJ_P0066798 Yipf1 protein_coding protein_coding MGP_AJ_T0066799.1 MGP_AJ_G0028501.1 mouse_genomes_project 4 104125325 104126031 + Yipf1 protein_coding processed_transcript MGP_AJ_T0066800.1 MGP_AJ_G0028501.1 mouse_genomes_project 4 104125956 104155687 + Yipf1 protein_coding processed_transcript MGP_AJ_T0066801.1 MGP_AJ_G0028501.1 mouse_genomes_project 4 104129017 104170492 + Yipf1 protein_coding processed_transcript MGP_AJ_T0066802.1 MGP_AJ_G0028501.1 mouse_genomes_project 4 104134659 104147510 + Yipf1 protein_coding processed_transcript MGP_AJ_T0066803.1 MGP_AJ_G0028501.1 mouse_genomes_project 4 104154119 104162546 + Yipf1 protein_coding processed_transcript MGP_AJ_T0066804.1 MGP_AJ_G0028501.1 mouse_genomes_project 4 104155562 104170491 + Yipf1 protein_coding processed_transcript MGP_AJ_T0014827.1 MGP_AJ_G0012922.1 mouse_genomes_project 4 146002662 146003483 - processed_pseudogene processed_pseudogene MGP_AJ_T0067480.1 MGP_AJ_G0028635.1 mouse_genomes_project 4 115038087 115045068 + MGP_AJ_P0067480 Ebna1bp2 protein_coding protein_coding MGP_AJ_T0067481.1 MGP_AJ_G0028635.1 mouse_genomes_project 4 115038136 115039220 + Ebna1bp2 protein_coding processed_transcript MGP_AJ_T0067482.1 MGP_AJ_G0028635.1 mouse_genomes_project 4 115038138 115038951 + Ebna1bp2 protein_coding processed_transcript MGP_AJ_T0067483.1 MGP_AJ_G0028635.1 mouse_genomes_project 4 115038448 115041483 + MGP_AJ_P0067483 Ebna1bp2 protein_coding protein_coding MGP_AJ_T0067484.1 MGP_AJ_G0028635.1 mouse_genomes_project 4 115038514 115042909 + Ebna1bp2 protein_coding processed_transcript MGP_AJ_T0004515.1 MGP_AJ_G0003922.1 mouse_genomes_project 4 113701165 113703074 + Gm12843 antisense antisense MGP_AJ_T0004516.1 MGP_AJ_G0003922.1 mouse_genomes_project 4 113701492 113702722 + Gm12843 antisense antisense MGP_AJ_T0007857.1 MGP_AJ_G0006420.1 mouse_genomes_project 4 51756770 51906170 - Gm12514 lincRNA lincRNA MGP_AJ_T0007858.1 MGP_AJ_G0006420.1 mouse_genomes_project 4 51757007 51761069 - Gm12514 lincRNA lincRNA MGP_AJ_T0014718.1 MGP_AJ_G0012813.1 mouse_genomes_project 4 111779034 111779407 - processed_pseudogene processed_pseudogene MGP_AJ_T0014443.1 MGP_AJ_G0012538.1 mouse_genomes_project 4 16929107 16930411 + processed_pseudogene processed_pseudogene MGP_AJ_T0069551.1 MGP_AJ_G0029131.1 mouse_genomes_project 4 149522026 149528652 - MGP_AJ_P0069551 Phf13 protein_coding protein_coding MGP_AJ_T0065624.1 MGP_AJ_G0028208.1 mouse_genomes_project 4 42563889 42583114 + Ccdc180 protein_coding processed_transcript MGP_AJ_T0065625.1 MGP_AJ_G0028208.1 mouse_genomes_project 4 42563889 42624872 + MGP_AJ_P0065625 Ccdc180 protein_coding protein_coding MGP_AJ_T0065626.1 MGP_AJ_G0028208.1 mouse_genomes_project 4 42564437 42624865 + MGP_AJ_P0065626 Ccdc180 protein_coding protein_coding MGP_AJ_T0065627.1 MGP_AJ_G0028208.1 mouse_genomes_project 4 42587865 42595404 + MGP_AJ_P0065627 Ccdc180 protein_coding protein_coding MGP_AJ_T0065832.1 MGP_AJ_G0028267.1 mouse_genomes_project 4 52156424 52161421 - MGP_AJ_P0065832 Klf4 protein_coding protein_coding MGP_AJ_T0065833.1 MGP_AJ_G0028267.1 mouse_genomes_project 4 52159560 52160728 - MGP_AJ_P0065833 Klf4 protein_coding protein_coding MGP_AJ_T0065834.1 MGP_AJ_G0028267.1 mouse_genomes_project 4 52159669 52161408 - MGP_AJ_P0065834 Klf4 protein_coding protein_coding MGP_AJ_T0068766.1 MGP_AJ_G0028930.1 mouse_genomes_project 4 133263470 133282106 + MGP_AJ_P0068766 Lactbl1 protein_coding protein_coding MGP_AJ_T0066360.1 MGP_AJ_G0028404.1 mouse_genomes_project 4 86123379 86128157 - MGP_AJ_P0066360 Cdkn2b protein_coding protein_coding MGP_AJ_T0068125.1 MGP_AJ_G0028794.1 mouse_genomes_project 4 126303123 126317953 - MGP_AJ_P0068125 Txlna protein_coding protein_coding MGP_AJ_T0068126.1 MGP_AJ_G0028794.1 mouse_genomes_project 4 126303128 126317530 - Txlna protein_coding retained_intron MGP_AJ_T0068127.1 MGP_AJ_G0028794.1 mouse_genomes_project 4 126303128 126317693 - MGP_AJ_P0068127 Txlna protein_coding protein_coding MGP_AJ_T0068128.1 MGP_AJ_G0028794.1 mouse_genomes_project 4 126309212 126317953 - MGP_AJ_P0068128 Txlna protein_coding protein_coding MGP_AJ_T0068129.1 MGP_AJ_G0028794.1 mouse_genomes_project 4 126311467 126317866 - MGP_AJ_P0068129 Txlna protein_coding protein_coding MGP_AJ_T0068130.1 MGP_AJ_G0028794.1 mouse_genomes_project 4 126311483 126317847 - MGP_AJ_P0068130 Txlna protein_coding protein_coding MGP_AJ_T0068131.1 MGP_AJ_G0028794.1 mouse_genomes_project 4 126316351 126317848 - MGP_AJ_P0068131 Txlna protein_coding protein_coding MGP_AJ_T0069900.1 MGP_AJ_G0029194.1 mouse_genomes_project 4 153421264 153422035 + Mrpl20 protein_coding processed_transcript MGP_AJ_T0069901.1 MGP_AJ_G0029194.1 mouse_genomes_project 4 153421913 153427459 + MGP_AJ_P0069901 Mrpl20 protein_coding protein_coding MGP_AJ_T0069902.1 MGP_AJ_G0029194.1 mouse_genomes_project 4 153422039 153427426 + MGP_AJ_P0069902 Mrpl20 protein_coding protein_coding MGP_AJ_T0069903.1 MGP_AJ_G0029194.1 mouse_genomes_project 4 153422042 153428603 + MGP_AJ_P0069903 Mrpl20 protein_coding nonsense_mediated_decay MGP_AJ_T0069904.1 MGP_AJ_G0029194.1 mouse_genomes_project 4 153422044 153425786 + MGP_AJ_P0069904 Mrpl20 protein_coding protein_coding MGP_AJ_T0069905.1 MGP_AJ_G0029194.1 mouse_genomes_project 4 153422151 153427422 + Mrpl20 protein_coding processed_transcript MGP_AJ_T0069568.1 MGP_AJ_G0029136.1 mouse_genomes_project 4 149627246 149656193 + MGP_AJ_P0069568 Plekhg5 protein_coding protein_coding MGP_AJ_T0069569.1 MGP_AJ_G0029136.1 mouse_genomes_project 4 149637209 149656197 + MGP_AJ_P0069569 Plekhg5 protein_coding protein_coding MGP_AJ_T0069570.1 MGP_AJ_G0029136.1 mouse_genomes_project 4 149637209 149656187 + MGP_AJ_P0069570 Plekhg5 protein_coding protein_coding MGP_AJ_T0069571.1 MGP_AJ_G0029136.1 mouse_genomes_project 4 149645076 149646770 + Plekhg5 protein_coding retained_intron MGP_AJ_T0069572.1 MGP_AJ_G0029136.1 mouse_genomes_project 4 149648315 149656191 + Plekhg5 protein_coding retained_intron MGP_AJ_T0069573.1 MGP_AJ_G0029136.1 mouse_genomes_project 4 149648408 149648889 + Plekhg5 protein_coding retained_intron MGP_AJ_T0004579.1 MGP_AJ_G0003974.1 mouse_genomes_project 4 138869341 138873423 + Tmem51os1 antisense antisense MGP_AJ_T0004580.1 MGP_AJ_G0003974.1 mouse_genomes_project 4 138869667 138873463 + Tmem51os1 antisense antisense MGP_AJ_T0004581.1 MGP_AJ_G0003974.1 mouse_genomes_project 4 138869709 138873416 + Tmem51os1 antisense antisense MGP_AJ_T0004582.1 MGP_AJ_G0003974.1 mouse_genomes_project 4 138870225 138873441 + Tmem51os1 antisense antisense MGP_AJ_T0064618.1 MGP_AJ_G0027987.1 mouse_genomes_project 4 620972 646327 - MGP_AJ_P0064618 Sdr16c6 protein_coding protein_coding MGP_AJ_T0064619.1 MGP_AJ_G0027987.1 mouse_genomes_project 4 620975 646918 - MGP_AJ_P0064619 Sdr16c6 protein_coding protein_coding MGP_AJ_T0065615.1 MGP_AJ_G0028205.1 mouse_genomes_project 4 42474590 42481775 + MGP_AJ_P0065615 Aldh1b1 protein_coding protein_coding MGP_AJ_T0065616.1 MGP_AJ_G0028205.1 mouse_genomes_project 4 42474689 42480029 + MGP_AJ_P0065616 Aldh1b1 protein_coding protein_coding MGP_AJ_T0014671.1 MGP_AJ_G0012766.1 mouse_genomes_project 4 95866866 95867585 - processed_pseudogene processed_pseudogene MGP_AJ_T0008012.1 MGP_AJ_G0006535.1 mouse_genomes_project 4 136639273 136641368 + Gm1667 lincRNA lincRNA MGP_AJ_T0099927.1 MGP_AJ_G0037893.1 mouse_genomes_project 4 80232568 80232709 - Gm25899 snRNA snRNA MGP_AJ_T0099972.1 MGP_AJ_G0037938.1 mouse_genomes_project 4 135291547 135291653 - Gm22961 snRNA snRNA MGP_AJ_T0010643.1 MGP_AJ_G0008765.1 mouse_genomes_project 4 137464611 137464675 + Gm25951 miRNA miRNA MGP_AJ_T0010618.1 MGP_AJ_G0008740.1 mouse_genomes_project 4 125957307 125957389 - Gm22994 miRNA miRNA MGP_AJ_T0069143.1 MGP_AJ_G0029023.1 mouse_genomes_project 4 138813833 138869674 - MGP_AJ_P0069143 Tmem51 protein_coding protein_coding MGP_AJ_T0099952.1 MGP_AJ_G0037918.1 mouse_genomes_project 4 113618269 113618385 + Gm23287 snRNA snRNA MGP_AJ_T0014617.1 MGP_AJ_G0012712.1 mouse_genomes_project 4 75006389 75007315 + processed_pseudogene processed_pseudogene MGP_AJ_T0014618.1 MGP_AJ_G0012713.1 mouse_genomes_project 4 75463383 75464660 + processed_pseudogene processed_pseudogene MGP_AJ_T0007823.1 MGP_AJ_G0006390.1 mouse_genomes_project 4 20428907 20429374 - Gm28448 lincRNA lincRNA MGP_AJ_T0014629.1 MGP_AJ_G0012724.1 mouse_genomes_project 4 80298049 80298512 + processed_pseudogene processed_pseudogene MGP_AJ_T0069943.1 MGP_AJ_G0029202.1 mouse_genomes_project 4 153506883 153508728 - Pusl1 protein_coding processed_transcript MGP_AJ_T0069945.1 MGP_AJ_G0029202.1 mouse_genomes_project 4 153507866 153510990 - MGP_AJ_P0069945 Pusl1 protein_coding protein_coding MGP_AJ_T0069946.1 MGP_AJ_G0029202.1 mouse_genomes_project 4 153509594 153510418 - Pusl1 protein_coding retained_intron MGP_AJ_T0069947.1 MGP_AJ_G0029202.1 mouse_genomes_project 4 153509705 153510935 - Pusl1 protein_coding retained_intron MGP_AJ_T0069948.1 MGP_AJ_G0029202.1 mouse_genomes_project 4 153509989 153510964 - Pusl1 protein_coding retained_intron MGP_AJ_T0069949.1 MGP_AJ_G0029202.1 mouse_genomes_project 4 153510050 153510978 - Pusl1 protein_coding processed_transcript MGP_AJ_T0069950.1 MGP_AJ_G0029202.1 mouse_genomes_project 4 153510260 153510937 - Pusl1 protein_coding retained_intron MGP_AJ_T0004624.1 MGP_AJ_G0004005.1 mouse_genomes_project 4 153631886 153633762 - Gm16008 antisense antisense MGP_AJ_T0004625.1 MGP_AJ_G0004005.1 mouse_genomes_project 4 153633664 153641329 - Gm16008 antisense antisense MGP_AJ_T0004626.1 MGP_AJ_G0004005.1 mouse_genomes_project 4 153636001 153641308 - Gm16008 antisense antisense MGP_AJ_T0014631.1 MGP_AJ_G0012726.1 mouse_genomes_project 4 81410117 81411165 + processed_pseudogene processed_pseudogene MGP_AJ_T0014445.1 MGP_AJ_G0012540.1 mouse_genomes_project 4 18088864 18089663 + processed_pseudogene processed_pseudogene MGP_AJ_T0099903.1 MGP_AJ_G0037869.1 mouse_genomes_project 4 28401476 28401594 - Gm26254 snRNA snRNA MGP_AJ_T0010651.1 MGP_AJ_G0008773.1 mouse_genomes_project 4 153407712 153407838 + Gm27743 miRNA miRNA MGP_AJ_T0068146.1 MGP_AJ_G0028798.1 mouse_genomes_project 4 126498175 126525946 + Ptp4a2 protein_coding processed_transcript MGP_AJ_T0068147.1 MGP_AJ_G0028798.1 mouse_genomes_project 4 126498178 126499482 + Ptp4a2 protein_coding retained_intron MGP_AJ_T0068148.1 MGP_AJ_G0028798.1 mouse_genomes_project 4 126506916 126536142 + MGP_AJ_P0068148 Ptp4a2 protein_coding protein_coding MGP_AJ_T0068149.1 MGP_AJ_G0028798.1 mouse_genomes_project 4 126507379 126525910 + Ptp4a2 protein_coding processed_transcript MGP_AJ_T0068150.1 MGP_AJ_G0028798.1 mouse_genomes_project 4 126507420 126526080 + Ptp4a2 protein_coding processed_transcript MGP_AJ_T0068151.1 MGP_AJ_G0028798.1 mouse_genomes_project 4 126526210 126536149 + MGP_AJ_P0068151 Ptp4a2 protein_coding unknown_likely_coding MGP_AJ_T0014514.1 MGP_AJ_G0012609.1 mouse_genomes_project 4 36293228 36293916 - processed_pseudogene processed_pseudogene MGP_AJ_T0014441.1 MGP_AJ_G0012536.1 mouse_genomes_project 4 15809976 15810824 + processed_pseudogene processed_pseudogene MGP_AJ_T0067914.1 MGP_AJ_G0028749.1 mouse_genomes_project 4 123674365 123684334 + MGP_AJ_P0067914 Sfpq protein_coding protein_coding MGP_AJ_T0067915.1 MGP_AJ_G0028749.1 mouse_genomes_project 4 123676424 123680359 + Sfpq protein_coding processed_transcript MGP_AJ_T0067916.1 MGP_AJ_G0028749.1 mouse_genomes_project 4 123676568 123690261 + Sfpq protein_coding processed_transcript MGP_AJ_T0067917.1 MGP_AJ_G0028749.1 mouse_genomes_project 4 123678966 123679657 + Sfpq protein_coding processed_transcript MGP_AJ_T0067918.1 MGP_AJ_G0028749.1 mouse_genomes_project 4 123678998 123681058 + Sfpq protein_coding processed_transcript MGP_AJ_T0067919.1 MGP_AJ_G0028749.1 mouse_genomes_project 4 123679487 123680592 + Sfpq protein_coding processed_transcript MGP_AJ_T0068071.1 MGP_AJ_G0028787.1 mouse_genomes_project 4 126225863 126236102 - MGP_AJ_P0068071 Lck protein_coding protein_coding MGP_AJ_T0068072.1 MGP_AJ_G0028787.1 mouse_genomes_project 4 126225868 126251421 - MGP_AJ_P0068072 Lck protein_coding protein_coding MGP_AJ_T0068073.1 MGP_AJ_G0028787.1 mouse_genomes_project 4 126225868 126236121 - MGP_AJ_P0068073 Lck protein_coding protein_coding MGP_AJ_T0068074.1 MGP_AJ_G0028787.1 mouse_genomes_project 4 126226414 126233587 - Lck protein_coding retained_intron MGP_AJ_T0068075.1 MGP_AJ_G0028787.1 mouse_genomes_project 4 126229548 126233970 - Lck protein_coding retained_intron MGP_AJ_T0068076.1 MGP_AJ_G0028787.1 mouse_genomes_project 4 126233214 126234200 - Lck protein_coding retained_intron MGP_AJ_T0068077.1 MGP_AJ_G0028787.1 mouse_genomes_project 4 126234592 126235817 - Lck protein_coding retained_intron MGP_AJ_T0068078.1 MGP_AJ_G0028787.1 mouse_genomes_project 4 126235094 126236102 - MGP_AJ_P0068078 Lck protein_coding protein_coding MGP_AJ_T0014677.1 MGP_AJ_G0012772.1 mouse_genomes_project 4 97314319 97315253 - processed_pseudogene processed_pseudogene MGP_AJ_T0066660.1 MGP_AJ_G0028471.1 mouse_genomes_project 4 100109244 100162545 + MGP_AJ_P0066660 Oma1 protein_coding protein_coding MGP_AJ_T0066661.1 MGP_AJ_G0028471.1 mouse_genomes_project 4 100120675 100125157 + Oma1 protein_coding processed_transcript MGP_AJ_T0066662.1 MGP_AJ_G0028471.1 mouse_genomes_project 4 100125175 100167970 + Oma1 protein_coding processed_transcript MGP_AJ_T0014732.1 MGP_AJ_G0012827.1 mouse_genomes_project 4 114175088 114175403 - processed_pseudogene processed_pseudogene MGP_AJ_T0004530.1 MGP_AJ_G0003934.1 mouse_genomes_project 4 120417150 120435158 - 1700121C08Rik antisense antisense MGP_AJ_T0067742.1 MGP_AJ_G0028710.1 mouse_genomes_project 4 121267110 121288105 - MGP_AJ_P0067742 Utp11l protein_coding protein_coding MGP_AJ_T0067743.1 MGP_AJ_G0028710.1 mouse_genomes_project 4 121267841 121288072 - MGP_AJ_P0067743 Utp11l protein_coding unknown_likely_coding MGP_AJ_T0067744.1 MGP_AJ_G0028710.1 mouse_genomes_project 4 121268357 121288039 - Utp11l protein_coding processed_transcript MGP_AJ_T0069210.1 MGP_AJ_G0029061.1 mouse_genomes_project 4 141622187 141637934 + MGP_AJ_P0069210 9430007A20Rik protein_coding protein_coding MGP_AJ_T0068682.1 MGP_AJ_G0028912.1 mouse_genomes_project 4 132538680 132558271 + MGP_AJ_P0068682 Fuca1 protein_coding protein_coding MGP_AJ_T0068683.1 MGP_AJ_G0028912.1 mouse_genomes_project 4 132547806 132552672 + Fuca1 protein_coding processed_transcript MGP_AJ_T0068684.1 MGP_AJ_G0028912.1 mouse_genomes_project 4 132550898 132557253 + Fuca1 protein_coding processed_transcript MGP_AJ_T0068685.1 MGP_AJ_G0028912.1 mouse_genomes_project 4 132551025 132553256 + Fuca1 protein_coding processed_transcript MGP_AJ_T0068686.1 MGP_AJ_G0028912.1 mouse_genomes_project 4 132554612 132557253 + Fuca1 protein_coding processed_transcript MGP_AJ_T0069190.1 MGP_AJ_G0029048.1 mouse_genomes_project 4 141163990 141169102 - MGP_AJ_P0069190 Oog3 protein_coding protein_coding MGP_AJ_T0014812.1 MGP_AJ_G0012907.1 mouse_genomes_project 4 139968257 139968716 + processed_pseudogene processed_pseudogene MGP_AJ_T0065662.1 MGP_AJ_G0028217.1 mouse_genomes_project 4 43123141 43145787 + MGP_AJ_P0065662 Anp32b protein_coding protein_coding MGP_AJ_T0066702.1 MGP_AJ_G0028487.1 mouse_genomes_project 4 103467427 103484118 - MGP_AJ_P0066702 Ttc4 protein_coding protein_coding MGP_AJ_T0066703.1 MGP_AJ_G0028487.1 mouse_genomes_project 4 103467431 103483860 - Ttc4 protein_coding processed_transcript MGP_AJ_T0066704.1 MGP_AJ_G0028487.1 mouse_genomes_project 4 103467604 103472716 - Ttc4 protein_coding processed_transcript MGP_AJ_T0066705.1 MGP_AJ_G0028487.1 mouse_genomes_project 4 103468235 103484040 - MGP_AJ_P0066705 Ttc4 protein_coding protein_coding MGP_AJ_T0066706.1 MGP_AJ_G0028487.1 mouse_genomes_project 4 103472812 103476850 - Ttc4 protein_coding processed_transcript MGP_AJ_T0066707.1 MGP_AJ_G0028487.1 mouse_genomes_project 4 103473315 103476198 - Ttc4 protein_coding processed_transcript MGP_AJ_T0066708.1 MGP_AJ_G0028487.1 mouse_genomes_project 4 103475629 103484065 - MGP_AJ_P0066708 Ttc4 protein_coding protein_coding MGP_AJ_T0066709.1 MGP_AJ_G0028487.1 mouse_genomes_project 4 103476904 103484075 - Ttc4 protein_coding processed_transcript MGP_AJ_T0066710.1 MGP_AJ_G0028487.1 mouse_genomes_project 4 103481455 103484063 - Ttc4 protein_coding processed_transcript MGP_AJ_T0004617.1 MGP_AJ_G0004002.1 mouse_genomes_project 4 153350881 153353058 - 1500002C15Rik antisense antisense MGP_AJ_T0004618.1 MGP_AJ_G0004002.1 mouse_genomes_project 4 153350884 153352958 - 1500002C15Rik antisense antisense MGP_AJ_T0004571.1 MGP_AJ_G0003968.1 mouse_genomes_project 4 138166166 138178944 + Gm13075 antisense antisense MGP_AJ_T0004572.1 MGP_AJ_G0003968.1 mouse_genomes_project 4 138166194 138180120 + Gm13075 antisense antisense MGP_AJ_T0014830.1 MGP_AJ_G0012925.1 mouse_genomes_project 4 146954979 146955355 + processed_pseudogene processed_pseudogene MGP_AJ_T0066111.1 MGP_AJ_G0028344.1 mouse_genomes_project 4 68543227 68545550 - MGP_AJ_P0066111 Gm11232 protein_coding protein_coding MGP_AJ_T0066384.1 MGP_AJ_G0028412.1 mouse_genomes_project 4 91300893 91301426 + MGP_AJ_P0066384 Gm10306 protein_coding protein_coding MGP_AJ_T0014433.1 MGP_AJ_G0012528.1 mouse_genomes_project 4 13590791 13591270 - processed_pseudogene processed_pseudogene MGP_AJ_T0004487.1 MGP_AJ_G0003900.1 mouse_genomes_project 4 95537377 95543024 + Kank4os antisense antisense MGP_AJ_T0065161.1 MGP_AJ_G0028119.1 mouse_genomes_project 4 37909180 37924956 + MGP_AJ_P0065161 Nudt2 protein_coding protein_coding MGP_AJ_T0099931.1 MGP_AJ_G0037897.1 mouse_genomes_project 4 90394617 90394724 + Gm24796 snRNA snRNA MGP_AJ_T0004586.1 MGP_AJ_G0003978.1 mouse_genomes_project 4 145489716 145491341 - Gm13201 antisense antisense MGP_AJ_T0004587.1 MGP_AJ_G0003978.1 mouse_genomes_project 4 145489931 145493606 - Gm13201 antisense antisense MGP_AJ_T0068240.1 MGP_AJ_G0028816.1 mouse_genomes_project 4 128311115 128382665 - MGP_AJ_P0068240 Ptpru protein_coding unknown_likely_coding MGP_AJ_T0068241.1 MGP_AJ_G0028816.1 mouse_genomes_project 4 128311119 128382797 - MGP_AJ_P0068241 Ptpru protein_coding protein_coding MGP_AJ_T0068242.1 MGP_AJ_G0028816.1 mouse_genomes_project 4 128311120 128311584 - Ptpru protein_coding processed_transcript MGP_AJ_T0068243.1 MGP_AJ_G0028816.1 mouse_genomes_project 4 128312160 128382740 - MGP_AJ_P0068243 Ptpru protein_coding protein_coding MGP_AJ_T0068244.1 MGP_AJ_G0028816.1 mouse_genomes_project 4 128314798 128382761 - Ptpru protein_coding processed_transcript MGP_AJ_T0068245.1 MGP_AJ_G0028816.1 mouse_genomes_project 4 128325892 128366013 - MGP_AJ_P0068245 Ptpru protein_coding protein_coding MGP_AJ_T0068246.1 MGP_AJ_G0028816.1 mouse_genomes_project 4 128331196 128346484 - Ptpru protein_coding processed_transcript MGP_AJ_T0068247.1 MGP_AJ_G0028816.1 mouse_genomes_project 4 128336263 128341035 - Ptpru protein_coding retained_intron MGP_AJ_T0068248.1 MGP_AJ_G0028816.1 mouse_genomes_project 4 128343227 128347108 - Ptpru protein_coding retained_intron MGP_AJ_T0068661.1 MGP_AJ_G0028904.1 mouse_genomes_project 4 132107216 132131796 + Stpg1 protein_coding processed_transcript MGP_AJ_T0068662.1 MGP_AJ_G0028904.1 mouse_genomes_project 4 132108403 132146359 + Stpg1 protein_coding processed_transcript MGP_AJ_T0068663.1 MGP_AJ_G0028904.1 mouse_genomes_project 4 132108413 132150170 + MGP_AJ_P0068663 Stpg1 protein_coding protein_coding MGP_AJ_T0014503.1 MGP_AJ_G0012598.1 mouse_genomes_project 4 32412120 32413062 - processed_pseudogene processed_pseudogene MGP_AJ_T0099899.1 MGP_AJ_G0037865.1 mouse_genomes_project 4 22263305 22263408 - Gm24042 snRNA snRNA MGP_AJ_T0068343.1 MGP_AJ_G0028834.1 mouse_genomes_project 4 129127987 129146979 + MGP_AJ_P0068343 Ptafr protein_coding protein_coding MGP_AJ_T0007916.1 MGP_AJ_G0006470.1 mouse_genomes_project 4 98154710 98161419 + lincRNA lincRNA MGP_AJ_T0065714.1 MGP_AJ_G0028230.1 mouse_genomes_project 4 44801869 44861013 + MGP_AJ_P0065714 Stx17 protein_coding protein_coding MGP_AJ_T0065715.1 MGP_AJ_G0028230.1 mouse_genomes_project 4 44801877 44836187 + MGP_AJ_P0065715 Stx17 protein_coding protein_coding MGP_AJ_T0065716.1 MGP_AJ_G0028230.1 mouse_genomes_project 4 44801880 44861609 + MGP_AJ_P0065716 Stx17 protein_coding protein_coding MGP_AJ_T0065717.1 MGP_AJ_G0028230.1 mouse_genomes_project 4 44801889 44857333 + MGP_AJ_P0065717 Stx17 protein_coding protein_coding MGP_AJ_T0001407.1 MGP_AJ_G0001330.1 mouse_genomes_project 4 9152293 9231640 + TEC TEC MGP_AJ_T0007911.1 MGP_AJ_G0006467.1 mouse_genomes_project 4 98039437 98069717 - Gm12796 lincRNA lincRNA MGP_AJ_T0065569.1 MGP_AJ_G0028195.1 mouse_genomes_project 4 41656169 41677949 - MGP_AJ_P0065569 Zbtb5 protein_coding protein_coding MGP_AJ_T0065570.1 MGP_AJ_G0028195.1 mouse_genomes_project 4 41660440 41677682 - MGP_AJ_P0065570 Zbtb5 protein_coding protein_coding MGP_AJ_T0069489.1 MGP_AJ_G0029120.1 mouse_genomes_project 4 148121460 148147245 - MGP_AJ_P0069489 Slc45a1 protein_coding protein_coding MGP_AJ_T0069490.1 MGP_AJ_G0029120.1 mouse_genomes_project 4 148122935 148147168 - MGP_AJ_P0069490 Slc45a1 protein_coding protein_coding MGP_AJ_T0069491.1 MGP_AJ_G0029120.1 mouse_genomes_project 4 148137551 148138352 - Slc45a1 protein_coding retained_intron MGP_AJ_T0014729.1 MGP_AJ_G0012824.1 mouse_genomes_project 4 113936675 113937054 - processed_pseudogene processed_pseudogene MGP_AJ_T0014564.1 MGP_AJ_G0012659.1 mouse_genomes_project 4 52017436 52017821 - processed_pseudogene processed_pseudogene MGP_AJ_T0067666.1 MGP_AJ_G0028688.1 mouse_genomes_project 4 119485499 119499863 - Mfsd2a protein_coding processed_transcript MGP_AJ_T0067667.1 MGP_AJ_G0028688.1 mouse_genomes_project 4 119485499 119499899 - MGP_AJ_P0067667 Mfsd2a protein_coding protein_coding MGP_AJ_T0067668.1 MGP_AJ_G0028688.1 mouse_genomes_project 4 119495465 119498699 - Mfsd2a protein_coding processed_transcript MGP_AJ_T0067669.1 MGP_AJ_G0028688.1 mouse_genomes_project 4 119495492 119499899 - MGP_AJ_P0067669 Mfsd2a protein_coding protein_coding MGP_AJ_T0064955.1 MGP_AJ_G0028068.1 mouse_genomes_project 4 29004972 29007085 - MGP_AJ_P0064955 Gja10 protein_coding protein_coding MGP_AJ_T0099916.1 MGP_AJ_G0037882.1 mouse_genomes_project 4 45959073 45959179 + Gm22685 snRNA snRNA MGP_AJ_T0064620.1 MGP_AJ_G0027988.1 mouse_genomes_project 4 695999 700945 - MGP_AJ_P0064620 Penk protein_coding protein_coding MGP_AJ_T0064621.1 MGP_AJ_G0027988.1 mouse_genomes_project 4 696000 701287 - MGP_AJ_P0064621 Penk protein_coding protein_coding MGP_AJ_T0014649.1 MGP_AJ_G0012744.1 mouse_genomes_project 4 87653163 87653658 + processed_pseudogene processed_pseudogene MGP_AJ_T0069734.1 MGP_AJ_G0029162.1 mouse_genomes_project 4 151943588 151957392 + MGP_AJ_P0069734 B230104I21Rik protein_coding protein_coding MGP_AJ_T0064764.1 MGP_AJ_G0028016.1 mouse_genomes_project 4 8530434 8532143 - MGP_AJ_P0064764 Gm10604 protein_coding protein_coding MGP_AJ_T0014555.1 MGP_AJ_G0012650.1 mouse_genomes_project 4 50423981 50424368 - processed_pseudogene processed_pseudogene MGP_AJ_T0011559.1 MGP_AJ_G0009681.1 mouse_genomes_project 4 28919407 28919674 + Gm24371 misc_RNA misc_RNA MGP_AJ_T0014562.1 MGP_AJ_G0012657.1 mouse_genomes_project 4 51881582 51882165 + processed_pseudogene processed_pseudogene MGP_AJ_T0066677.1 MGP_AJ_G0028475.1 mouse_genomes_project 4 101659554 101661109 + MGP_AJ_P0066677 Gm17662 protein_coding protein_coding MGP_AJ_T0004559.1 MGP_AJ_G0003958.1 mouse_genomes_project 4 134381751 134391461 - Rap1gapos antisense antisense MGP_AJ_T0018055.1 MGP_AJ_G0015527.1 mouse_genomes_project 4 68985860 68999841 + C630043F03Rik processed_transcript processed_transcript MGP_AJ_T0064918.1 MGP_AJ_G0028059.1 mouse_genomes_project 4 21434642 21477792 + Gpr63 protein_coding processed_transcript MGP_AJ_T0064919.1 MGP_AJ_G0028059.1 mouse_genomes_project 4 21441647 21479725 + MGP_AJ_P0064919 Gpr63 protein_coding protein_coding MGP_AJ_T0066527.1 MGP_AJ_G0028442.1 mouse_genomes_project 4 95965946 96030975 + MGP_AJ_P0066527 Atg4c protein_coding protein_coding MGP_AJ_T0066528.1 MGP_AJ_G0028442.1 mouse_genomes_project 4 95966159 96030971 + MGP_AJ_P0066528 Atg4c protein_coding protein_coding MGP_AJ_T0066529.1 MGP_AJ_G0028442.1 mouse_genomes_project 4 95991751 95996099 + Atg4c protein_coding processed_transcript MGP_AJ_T0014581.1 MGP_AJ_G0012676.1 mouse_genomes_project 4 61771962 61772320 + processed_pseudogene processed_pseudogene MGP_AJ_T0099975.1 MGP_AJ_G0037941.1 mouse_genomes_project 4 141876861 141877027 - Gm25938 snRNA snRNA MGP_AJ_T0098678.1 MGP_AJ_G0036662.1 mouse_genomes_project 4 50495449 50495568 + n-R5s185 rRNA rRNA MGP_AJ_T0008009.1 MGP_AJ_G0006532.1 mouse_genomes_project 4 134048130 134049247 - 2810405F17Rik lincRNA lincRNA MGP_AJ_T0066896.1 MGP_AJ_G0028517.1 mouse_genomes_project 4 105208775 105215331 - MGP_AJ_P0066896 Gpx7 protein_coding protein_coding MGP_AJ_T0066897.1 MGP_AJ_G0028517.1 mouse_genomes_project 4 105209234 105215094 - MGP_AJ_P0066897 Gpx7 protein_coding protein_coding MGP_AJ_T0007825.1 MGP_AJ_G0006392.1 mouse_genomes_project 4 23089213 23156266 - 4930548K13Rik lincRNA lincRNA MGP_AJ_T0065763.1 MGP_AJ_G0028246.1 mouse_genomes_project 4 46340815 46347512 + MGP_AJ_P0065763 Rnf20 protein_coding protein_coding MGP_AJ_T0065764.1 MGP_AJ_G0028246.1 mouse_genomes_project 4 46340869 46365684 + MGP_AJ_P0065764 Rnf20 protein_coding protein_coding MGP_AJ_T0065765.1 MGP_AJ_G0028246.1 mouse_genomes_project 4 46340869 46359059 + MGP_AJ_P0065765 Rnf20 protein_coding protein_coding MGP_AJ_T0065766.1 MGP_AJ_G0028246.1 mouse_genomes_project 4 46340875 46365685 + MGP_AJ_P0065766 Rnf20 protein_coding protein_coding MGP_AJ_T0065767.1 MGP_AJ_G0028246.1 mouse_genomes_project 4 46340902 46353349 + MGP_AJ_P0065767 Rnf20 protein_coding protein_coding MGP_AJ_T0065768.1 MGP_AJ_G0028246.1 mouse_genomes_project 4 46340946 46348823 + Rnf20 protein_coding processed_transcript MGP_AJ_T0065769.1 MGP_AJ_G0028246.1 mouse_genomes_project 4 46340968 46351769 + Rnf20 protein_coding processed_transcript MGP_AJ_T0065770.1 MGP_AJ_G0028246.1 mouse_genomes_project 4 46350527 46357247 + Rnf20 protein_coding processed_transcript MGP_AJ_T0065771.1 MGP_AJ_G0028246.1 mouse_genomes_project 4 46359070 46361634 + Rnf20 protein_coding processed_transcript MGP_AJ_T0065772.1 MGP_AJ_G0028246.1 mouse_genomes_project 4 46359775 46361358 + Rnf20 protein_coding processed_transcript MGP_AJ_T0068491.1 MGP_AJ_G0028869.1 mouse_genomes_project 4 130646411 130679005 + MGP_AJ_P0068491 Aim1l protein_coding unknown_likely_coding MGP_AJ_T0068492.1 MGP_AJ_G0028869.1 mouse_genomes_project 4 130651486 130658255 + MGP_AJ_P0068492 Aim1l protein_coding protein_coding MGP_AJ_T0068493.1 MGP_AJ_G0028869.1 mouse_genomes_project 4 130653934 130679102 + MGP_AJ_P0068493 Aim1l protein_coding protein_coding MGP_AJ_T0068494.1 MGP_AJ_G0028869.1 mouse_genomes_project 4 130664374 130668223 + Aim1l protein_coding processed_transcript MGP_AJ_T0068495.1 MGP_AJ_G0028869.1 mouse_genomes_project 4 130664455 130674117 + MGP_AJ_P0068495 Aim1l protein_coding protein_coding MGP_AJ_T0068496.1 MGP_AJ_G0028869.1 mouse_genomes_project 4 130667848 130677697 + Aim1l protein_coding retained_intron MGP_AJ_T0068497.1 MGP_AJ_G0028869.1 mouse_genomes_project 4 130667848 130679099 + Aim1l protein_coding retained_intron MGP_AJ_T0068498.1 MGP_AJ_G0028869.1 mouse_genomes_project 4 130667851 130676111 + Aim1l protein_coding retained_intron MGP_AJ_T0068499.1 MGP_AJ_G0028869.1 mouse_genomes_project 4 130667886 130675675 + Aim1l protein_coding retained_intron MGP_AJ_T0068500.1 MGP_AJ_G0028869.1 mouse_genomes_project 4 130667972 130668406 + Aim1l protein_coding retained_intron MGP_AJ_T0068502.1 MGP_AJ_G0028869.1 mouse_genomes_project 4 130677415 130678984 + Aim1l protein_coding retained_intron MGP_AJ_T0068503.1 MGP_AJ_G0028869.1 mouse_genomes_project 4 130677750 130679094 + Aim1l protein_coding processed_transcript MGP_AJ_T0067675.1 MGP_AJ_G0028690.1 mouse_genomes_project 4 119556823 119596502 + Trit1 protein_coding processed_transcript MGP_AJ_T0067676.1 MGP_AJ_G0028690.1 mouse_genomes_project 4 119556823 119596502 + MGP_AJ_P0067676 Trit1 protein_coding protein_coding MGP_AJ_T0067677.1 MGP_AJ_G0028690.1 mouse_genomes_project 4 119590308 119595756 + Trit1 protein_coding processed_transcript MGP_AJ_T0014526.1 MGP_AJ_G0012621.1 mouse_genomes_project 4 41805773 41806132 - processed_pseudogene processed_pseudogene MGP_AJ_T0065729.1 MGP_AJ_G0028234.1 mouse_genomes_project 4 45108608 45146923 - MGP_AJ_P0065729 Tex10 protein_coding nonsense_mediated_decay MGP_AJ_T0065730.1 MGP_AJ_G0028234.1 mouse_genomes_project 4 45108608 45151574 - MGP_AJ_P0065730 Tex10 protein_coding protein_coding MGP_AJ_T0065731.1 MGP_AJ_G0028234.1 mouse_genomes_project 4 45108706 45151537 - MGP_AJ_P0065731 Tex10 protein_coding protein_coding MGP_AJ_T0065732.1 MGP_AJ_G0028234.1 mouse_genomes_project 4 45136125 45137260 - Tex10 protein_coding retained_intron MGP_AJ_T0065733.1 MGP_AJ_G0028234.1 mouse_genomes_project 4 45145705 45147995 - Tex10 protein_coding processed_transcript MGP_AJ_T0065734.1 MGP_AJ_G0028234.1 mouse_genomes_project 4 45147207 45151458 - Tex10 protein_coding retained_intron MGP_AJ_T0101217.1 MGP_AJ_G0039183.1 mouse_genomes_project 4 53541189 53541321 - Gm25053 snoRNA snoRNA MGP_AJ_T0069492.1 MGP_AJ_G0029121.1 mouse_genomes_project 4 148358182 148373142 + MGP_AJ_P0069492 Errfi1 protein_coding protein_coding MGP_AJ_T0069493.1 MGP_AJ_G0029121.1 mouse_genomes_project 4 148359336 148360078 + Errfi1 protein_coding processed_transcript MGP_AJ_T0069494.1 MGP_AJ_G0029121.1 mouse_genomes_project 4 148359336 148373137 + MGP_AJ_P0069494 Errfi1 protein_coding protein_coding MGP_AJ_T0004615.1 MGP_AJ_G0004000.1 mouse_genomes_project 4 152649044 152652422 + Gm10564 antisense antisense MGP_AJ_T0014531.1 MGP_AJ_G0012626.1 mouse_genomes_project 4 43092906 43093229 - processed_pseudogene processed_pseudogene MGP_AJ_T0068298.1 MGP_AJ_G0028826.1 mouse_genomes_project 4 128857063 128858252 - MGP_AJ_P0068298 Rab42 protein_coding protein_coding MGP_AJ_T0010612.1 MGP_AJ_G0008734.1 mouse_genomes_project 4 117250198 117250290 + Mir30f miRNA miRNA MGP_AJ_T0004426.1 MGP_AJ_G0003856.1 mouse_genomes_project 4 11473611 11495875 + Gm11837 antisense antisense MGP_AJ_T0004427.1 MGP_AJ_G0003856.1 mouse_genomes_project 4 11474370 11496012 + Gm11837 antisense antisense MGP_AJ_T0004428.1 MGP_AJ_G0003856.1 mouse_genomes_project 4 11474385 11495887 + Gm11837 antisense antisense MGP_AJ_T0069231.1 MGP_AJ_G0029069.1 mouse_genomes_project 4 142328836 142363036 - MGP_AJ_P0069231 Tnfrsf1b protein_coding protein_coding MGP_AJ_T0069232.1 MGP_AJ_G0029069.1 mouse_genomes_project 4 142340773 142363036 - MGP_AJ_P0069232 Tnfrsf1b protein_coding nonsense_mediated_decay MGP_AJ_T0018074.1 MGP_AJ_G0015543.1 mouse_genomes_project 4 106371519 106453795 + Gm12811 processed_transcript processed_transcript MGP_AJ_T0102591.1 MGP_AJ_G0040333.1 mouse_genomes_project 4 85434353 85434920 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0014400.1 MGP_AJ_G0012495.1 mouse_genomes_project 4 5147211 5148161 - processed_pseudogene processed_pseudogene MGP_AJ_T0069160.1 MGP_AJ_G0029029.1 mouse_genomes_project 4 140251264 140259928 + MGP_AJ_P0069160 Pramef8 protein_coding protein_coding MGP_AJ_T0069161.1 MGP_AJ_G0029029.1 mouse_genomes_project 4 140251810 140255679 + MGP_AJ_P0069161 Pramef8 protein_coding protein_coding MGP_AJ_T0069162.1 MGP_AJ_G0029029.1 mouse_genomes_project 4 140251825 140259928 + MGP_AJ_P0069162 Pramef8 protein_coding protein_coding MGP_AJ_T0069163.1 MGP_AJ_G0029029.1 mouse_genomes_project 4 140251847 140256506 + MGP_AJ_P0069163 Pramef8 protein_coding protein_coding MGP_AJ_T0069164.1 MGP_AJ_G0029029.1 mouse_genomes_project 4 140251848 140253211 + Pramef8 protein_coding processed_transcript MGP_AJ_T0065749.1 MGP_AJ_G0028240.1 mouse_genomes_project 4 46152567 46156716 - MGP_AJ_P0065749 protein_coding protein_coding MGP_AJ_T0065750.1 MGP_AJ_G0028240.1 mouse_genomes_project 4 46156544 46177580 - MGP_AJ_P0065750 protein_coding protein_coding MGP_AJ_T0065751.1 MGP_AJ_G0028240.1 mouse_genomes_project 4 46166412 46177547 - protein_coding processed_transcript MGP_AJ_T0014743.1 MGP_AJ_G0012838.1 mouse_genomes_project 4 115983305 115983682 + processed_pseudogene processed_pseudogene MGP_AJ_T0010585.1 MGP_AJ_G0008707.1 mouse_genomes_project 4 40869998 40870071 - Mir5106 miRNA miRNA MGP_AJ_T0064830.1 MGP_AJ_G0028037.1 mouse_genomes_project 4 15831476 16071961 + MGP_AJ_P0064830 Cngb3 protein_coding protein_coding MGP_AJ_T0101191.1 MGP_AJ_G0039157.1 mouse_genomes_project 4 17811625 17811710 + Gm25977 snoRNA snoRNA MGP_AJ_T0069797.1 MGP_AJ_G0029174.1 mouse_genomes_project 4 152763740 152798579 - Ski protein_coding processed_transcript MGP_AJ_T0069798.1 MGP_AJ_G0029174.1 mouse_genomes_project 4 152763740 152832706 - MGP_AJ_P0069798 Ski protein_coding protein_coding MGP_AJ_T0069799.1 MGP_AJ_G0029174.1 mouse_genomes_project 4 152763740 152832763 - MGP_AJ_P0069799 Ski protein_coding protein_coding MGP_AJ_T0068972.1 MGP_AJ_G0028981.1 mouse_genomes_project 4 136376816 136393490 + MGP_AJ_P0068972 Tas1r2 protein_coding protein_coding MGP_AJ_T0068973.1 MGP_AJ_G0028981.1 mouse_genomes_project 4 136376827 136393065 + MGP_AJ_P0068973 Tas1r2 protein_coding protein_coding MGP_AJ_T0014595.1 MGP_AJ_G0012690.1 mouse_genomes_project 4 69347350 69347683 + processed_pseudogene processed_pseudogene MGP_AJ_T0014523.1 MGP_AJ_G0012618.1 mouse_genomes_project 4 40442243 40443603 - processed_pseudogene processed_pseudogene MGP_AJ_T0067485.1 MGP_AJ_G0028636.1 mouse_genomes_project 4 115085793 115086741 + MGP_AJ_P0067485 Olfr62 protein_coding protein_coding MGP_AJ_T0064822.1 MGP_AJ_G0028034.1 mouse_genomes_project 4 12688038 12728861 - MGP_AJ_P0064822 Ripk2 protein_coding protein_coding MGP_AJ_T0064823.1 MGP_AJ_G0028034.1 mouse_genomes_project 4 12688046 12728857 - MGP_AJ_P0064823 Ripk2 protein_coding nonsense_mediated_decay MGP_AJ_T0098684.1 MGP_AJ_G0036668.1 mouse_genomes_project 4 121416129 121416248 + n-R5s192 rRNA rRNA MGP_AJ_T0011560.1 MGP_AJ_G0009682.1 mouse_genomes_project 4 30853469 30853574 + Gm23466 misc_RNA misc_RNA MGP_AJ_T0066608.1 MGP_AJ_G0028464.1 mouse_genomes_project 4 99543866 99673110 + Sgip1 protein_coding retained_intron MGP_AJ_T0066609.1 MGP_AJ_G0028464.1 mouse_genomes_project 4 99559774 99772787 + MGP_AJ_P0066609 Sgip1 protein_coding protein_coding MGP_AJ_T0066610.1 MGP_AJ_G0028464.1 mouse_genomes_project 4 99559967 99666006 + Sgip1 protein_coding processed_transcript MGP_AJ_T0066611.1 MGP_AJ_G0028464.1 mouse_genomes_project 4 99559984 99772668 + MGP_AJ_P0066611 Sgip1 protein_coding protein_coding MGP_AJ_T0066612.1 MGP_AJ_G0028464.1 mouse_genomes_project 4 99559991 99672093 + MGP_AJ_P0066612 Sgip1 protein_coding protein_coding MGP_AJ_T0066613.1 MGP_AJ_G0028464.1 mouse_genomes_project 4 99559994 99663443 + Sgip1 protein_coding processed_transcript MGP_AJ_T0066614.1 MGP_AJ_G0028464.1 mouse_genomes_project 4 99560002 99771982 + MGP_AJ_P0066614 Sgip1 protein_coding protein_coding MGP_AJ_T0066615.1 MGP_AJ_G0028464.1 mouse_genomes_project 4 99560014 99672406 + Sgip1 protein_coding processed_transcript MGP_AJ_T0066616.1 MGP_AJ_G0028464.1 mouse_genomes_project 4 99560104 99719957 + MGP_AJ_P0066616 Sgip1 protein_coding nonsense_mediated_decay MGP_AJ_T0066617.1 MGP_AJ_G0028464.1 mouse_genomes_project 4 99560164 99774424 + MGP_AJ_P0066617 Sgip1 protein_coding protein_coding MGP_AJ_T0066618.1 MGP_AJ_G0028464.1 mouse_genomes_project 4 99560195 99770884 + MGP_AJ_P0066618 Sgip1 protein_coding unknown_likely_coding MGP_AJ_T0066619.1 MGP_AJ_G0028464.1 mouse_genomes_project 4 99672847 99771408 + MGP_AJ_P0066619 Sgip1 protein_coding protein_coding MGP_AJ_T0066620.1 MGP_AJ_G0028464.1 mouse_genomes_project 4 99722132 99729591 + Sgip1 protein_coding processed_transcript MGP_AJ_T0066621.1 MGP_AJ_G0028464.1 mouse_genomes_project 4 99728041 99729764 + Sgip1 protein_coding processed_transcript MGP_AJ_T0066622.1 MGP_AJ_G0028464.1 mouse_genomes_project 4 99763188 99768739 + Sgip1 protein_coding processed_transcript MGP_AJ_T0018073.1 MGP_AJ_G0015542.1 mouse_genomes_project 4 105402232 105430018 - Gm12743 processed_transcript processed_transcript MGP_AJ_T0102618.1 MGP_AJ_G0040360.1 mouse_genomes_project 4 136059349 136060500 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0069854.1 MGP_AJ_G0029182.1 mouse_genomes_project 4 153221177 153244559 + MGP_AJ_P0069854 Slc35e2 protein_coding protein_coding MGP_AJ_T0069855.1 MGP_AJ_G0029182.1 mouse_genomes_project 4 153221372 153241151 + MGP_AJ_P0069855 Slc35e2 protein_coding protein_coding MGP_AJ_T0069856.1 MGP_AJ_G0029182.1 mouse_genomes_project 4 153221704 153240380 + MGP_AJ_P0069856 Slc35e2 protein_coding protein_coding MGP_AJ_T0069857.1 MGP_AJ_G0029182.1 mouse_genomes_project 4 153229974 153240257 + Slc35e2 protein_coding processed_transcript MGP_AJ_T0014829.1 MGP_AJ_G0012924.1 mouse_genomes_project 4 146582872 146583760 - processed_pseudogene processed_pseudogene MGP_AJ_T0066017.1 MGP_AJ_G0028320.1 mouse_genomes_project 4 59323482 59419539 + MGP_AJ_P0066017 protein_coding protein_coding MGP_AJ_T0066018.1 MGP_AJ_G0028320.1 mouse_genomes_project 4 59341735 59417138 + MGP_AJ_P0066018 protein_coding protein_coding MGP_AJ_T0066019.1 MGP_AJ_G0028320.1 mouse_genomes_project 4 59363791 59383627 + protein_coding processed_transcript MGP_AJ_T0066020.1 MGP_AJ_G0028320.1 mouse_genomes_project 4 59379296 59419539 + MGP_AJ_P0066020 protein_coding protein_coding MGP_AJ_T0066021.1 MGP_AJ_G0028320.1 mouse_genomes_project 4 59383241 59391018 + protein_coding processed_transcript MGP_AJ_T0066022.1 MGP_AJ_G0028320.1 mouse_genomes_project 4 59383419 59386241 + protein_coding retained_intron MGP_AJ_T0066023.1 MGP_AJ_G0028320.1 mouse_genomes_project 4 59394074 59459511 + protein_coding retained_intron MGP_AJ_T0066024.1 MGP_AJ_G0028320.1 mouse_genomes_project 4 59394074 59465623 + protein_coding retained_intron MGP_AJ_T0066025.1 MGP_AJ_G0028320.1 mouse_genomes_project 4 59412272 59419539 + protein_coding retained_intron MGP_AJ_T0066026.1 MGP_AJ_G0028320.1 mouse_genomes_project 4 59423322 59450140 + MGP_AJ_P0066026 protein_coding protein_coding MGP_AJ_T0066027.1 MGP_AJ_G0028320.1 mouse_genomes_project 4 59428593 59450599 + MGP_AJ_P0066027 protein_coding protein_coding MGP_AJ_T0066028.1 MGP_AJ_G0028320.1 mouse_genomes_project 4 59434029 59450318 + protein_coding processed_transcript MGP_AJ_T0066029.1 MGP_AJ_G0028320.1 mouse_genomes_project 4 59445149 59464959 + MGP_AJ_P0066029 protein_coding protein_coding MGP_AJ_T0066030.1 MGP_AJ_G0028320.1 mouse_genomes_project 4 59456309 59463837 + MGP_AJ_P0066030 protein_coding unknown_likely_coding MGP_AJ_T0066031.1 MGP_AJ_G0028320.1 mouse_genomes_project 4 59461056 59465623 + protein_coding retained_intron MGP_AJ_T0066032.1 MGP_AJ_G0028320.1 mouse_genomes_project 4 59461270 59462744 + protein_coding processed_transcript MGP_AJ_T0066033.1 MGP_AJ_G0028320.1 mouse_genomes_project 4 59462285 59466606 + MGP_AJ_P0066033 protein_coding protein_coding MGP_AJ_T0101239.1 MGP_AJ_G0039205.1 mouse_genomes_project 4 102920041 102920156 - Gm26047 snoRNA snoRNA MGP_AJ_T0066045.1 MGP_AJ_G0028324.1 mouse_genomes_project 4 59971024 60050793 + Col27a1 protein_coding retained_intron MGP_AJ_T0066046.1 MGP_AJ_G0028324.1 mouse_genomes_project 4 59972432 60032008 + Col27a1 protein_coding retained_intron MGP_AJ_T0066047.1 MGP_AJ_G0028324.1 mouse_genomes_project 4 59972455 60092568 + MGP_AJ_P0066047 Col27a1 protein_coding protein_coding MGP_AJ_T0066048.1 MGP_AJ_G0028324.1 mouse_genomes_project 4 59972846 60092567 + MGP_AJ_P0066048 Col27a1 protein_coding unknown_likely_coding MGP_AJ_T0066049.1 MGP_AJ_G0028324.1 mouse_genomes_project 4 59991279 60091290 + MGP_AJ_P0066049 Col27a1 protein_coding nonsense_mediated_decay MGP_AJ_T0066050.1 MGP_AJ_G0028324.1 mouse_genomes_project 4 60039619 60091297 + MGP_AJ_P0066050 Col27a1 protein_coding nonsense_mediated_decay MGP_AJ_T0066051.1 MGP_AJ_G0028324.1 mouse_genomes_project 4 60040465 60091326 + Col27a1 protein_coding retained_intron MGP_AJ_T0066052.1 MGP_AJ_G0028324.1 mouse_genomes_project 4 60088561 60091715 + Col27a1 protein_coding processed_transcript MGP_AJ_T0066930.1 MGP_AJ_G0028524.1 mouse_genomes_project 4 105622474 105639218 - MGP_AJ_P0066930 Btf3l4 protein_coding protein_coding MGP_AJ_T0066931.1 MGP_AJ_G0028524.1 mouse_genomes_project 4 105624407 105631826 - Btf3l4 protein_coding processed_transcript MGP_AJ_T0066932.1 MGP_AJ_G0028524.1 mouse_genomes_project 4 105631333 105636168 - Btf3l4 protein_coding processed_transcript MGP_AJ_T0068727.1 MGP_AJ_G0028922.1 mouse_genomes_project 4 132880918 132904726 + Tcea3 protein_coding processed_transcript MGP_AJ_T0068728.1 MGP_AJ_G0028922.1 mouse_genomes_project 4 132881141 132908386 + MGP_AJ_P0068728 Tcea3 protein_coding protein_coding MGP_AJ_T0068729.1 MGP_AJ_G0028922.1 mouse_genomes_project 4 132881162 132897811 + MGP_AJ_P0068729 Tcea3 protein_coding protein_coding MGP_AJ_T0007940.1 MGP_AJ_G0006488.1 mouse_genomes_project 4 115430771 115446542 - Gm12865 lincRNA lincRNA MGP_AJ_T0065384.1 MGP_AJ_G0028162.1 mouse_genomes_project 4 40084893 40093049 - MGP_AJ_P0065384 Cd72 protein_coding protein_coding MGP_AJ_T0065385.1 MGP_AJ_G0028162.1 mouse_genomes_project 4 40086155 40092985 - MGP_AJ_P0065385 Cd72 protein_coding protein_coding MGP_AJ_T0065386.1 MGP_AJ_G0028162.1 mouse_genomes_project 4 40086155 40093006 - MGP_AJ_P0065386 Cd72 protein_coding protein_coding MGP_AJ_T0065387.1 MGP_AJ_G0028162.1 mouse_genomes_project 4 40086155 40093050 - MGP_AJ_P0065387 Cd72 protein_coding protein_coding MGP_AJ_T0065388.1 MGP_AJ_G0028162.1 mouse_genomes_project 4 40086166 40093048 - MGP_AJ_P0065388 Cd72 protein_coding protein_coding MGP_AJ_T0065389.1 MGP_AJ_G0028162.1 mouse_genomes_project 4 40086461 40088364 - Cd72 protein_coding retained_intron MGP_AJ_T0065390.1 MGP_AJ_G0028162.1 mouse_genomes_project 4 40088266 40090794 - Cd72 protein_coding retained_intron MGP_AJ_T0065391.1 MGP_AJ_G0028162.1 mouse_genomes_project 4 40090731 40093034 - Cd72 protein_coding retained_intron MGP_AJ_T0065392.1 MGP_AJ_G0028162.1 mouse_genomes_project 4 40090742 40092745 - Cd72 protein_coding processed_transcript MGP_AJ_T0065393.1 MGP_AJ_G0028162.1 mouse_genomes_project 4 40091022 40093048 - Cd72 protein_coding processed_transcript MGP_AJ_T0101258.1 MGP_AJ_G0039224.1 mouse_genomes_project 4 127776287 127776421 + Gm25261 snoRNA snoRNA MGP_AJ_T0069985.1 MGP_AJ_G0029209.1 mouse_genomes_project 4 153635868 153638596 + MGP_AJ_P0069985 Tnfrsf18 protein_coding protein_coding MGP_AJ_T0069986.1 MGP_AJ_G0029209.1 mouse_genomes_project 4 153636036 153638592 + Tnfrsf18 protein_coding retained_intron MGP_AJ_T0069987.1 MGP_AJ_G0029209.1 mouse_genomes_project 4 153636046 153638592 + MGP_AJ_P0069987 Tnfrsf18 protein_coding protein_coding MGP_AJ_T0069988.1 MGP_AJ_G0029209.1 mouse_genomes_project 4 153636046 153638592 + MGP_AJ_P0069988 Tnfrsf18 protein_coding protein_coding MGP_AJ_T0069989.1 MGP_AJ_G0029209.1 mouse_genomes_project 4 153636082 153638076 + Tnfrsf18 protein_coding processed_transcript MGP_AJ_T0069990.1 MGP_AJ_G0029209.1 mouse_genomes_project 4 153638072 153638596 + Tnfrsf18 protein_coding processed_transcript MGP_AJ_T0010581.1 MGP_AJ_G0008703.1 mouse_genomes_project 4 33077187 33077264 - Mir873a miRNA miRNA MGP_AJ_T0066912.1 MGP_AJ_G0028520.1 mouse_genomes_project 4 105388928 105405299 + Orc1 protein_coding processed_transcript MGP_AJ_T0066913.1 MGP_AJ_G0028520.1 mouse_genomes_project 4 105388939 105405440 + Orc1 protein_coding processed_transcript MGP_AJ_T0066914.1 MGP_AJ_G0028520.1 mouse_genomes_project 4 105388959 105424947 + MGP_AJ_P0066914 Orc1 protein_coding protein_coding MGP_AJ_T0066915.1 MGP_AJ_G0028520.1 mouse_genomes_project 4 105397803 105398586 + Orc1 protein_coding processed_transcript MGP_AJ_T0066916.1 MGP_AJ_G0028520.1 mouse_genomes_project 4 105414476 105416429 + Orc1 protein_coding processed_transcript MGP_AJ_T0102581.1 MGP_AJ_G0040323.1 mouse_genomes_project 4 40410528 40410830 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0066129.1 MGP_AJ_G0028349.1 mouse_genomes_project 4 70798196 70985469 + MGP_AJ_P0066129 Frmd3 protein_coding protein_coding MGP_AJ_T0066130.1 MGP_AJ_G0028349.1 mouse_genomes_project 4 70798198 70973307 + MGP_AJ_P0066130 Frmd3 protein_coding protein_coding MGP_AJ_T0066131.1 MGP_AJ_G0028349.1 mouse_genomes_project 4 70951518 70972392 + Frmd3 protein_coding processed_transcript MGP_AJ_T0065246.1 MGP_AJ_G0028139.1 mouse_genomes_project 4 38230359 38236927 - MGP_AJ_P0065246 protein_coding protein_coding MGP_AJ_T0067405.1 MGP_AJ_G0028619.1 mouse_genomes_project 4 114301628 114304634 - MGP_AJ_P0067405 Atp6v0b protein_coding protein_coding MGP_AJ_T0067406.1 MGP_AJ_G0028619.1 mouse_genomes_project 4 114301634 114303199 - Atp6v0b protein_coding retained_intron MGP_AJ_T0067407.1 MGP_AJ_G0028619.1 mouse_genomes_project 4 114301749 114303105 - Atp6v0b protein_coding retained_intron MGP_AJ_T0067408.1 MGP_AJ_G0028619.1 mouse_genomes_project 4 114302468 114303941 - Atp6v0b protein_coding retained_intron MGP_AJ_T0067409.1 MGP_AJ_G0028619.1 mouse_genomes_project 4 114302535 114303863 - MGP_AJ_P0067409 Atp6v0b protein_coding protein_coding MGP_AJ_T0067410.1 MGP_AJ_G0028619.1 mouse_genomes_project 4 114302939 114304594 - MGP_AJ_P0067410 Atp6v0b protein_coding protein_coding MGP_AJ_T0067411.1 MGP_AJ_G0028619.1 mouse_genomes_project 4 114303585 114304640 - MGP_AJ_P0067411 Atp6v0b protein_coding protein_coding MGP_AJ_T0004535.1 MGP_AJ_G0003938.1 mouse_genomes_project 4 121558350 121587638 - Gm12930 antisense antisense MGP_AJ_T0007821.1 MGP_AJ_G0006388.1 mouse_genomes_project 4 19413725 19423983 - 1700025O08Rik lincRNA lincRNA MGP_AJ_T0067179.1 MGP_AJ_G0028578.1 mouse_genomes_project 4 112468605 112490372 + MGP_AJ_P0067179 Lrrc41 protein_coding protein_coding MGP_AJ_T0067180.1 MGP_AJ_G0028578.1 mouse_genomes_project 4 112468799 112476377 + Lrrc41 protein_coding processed_transcript MGP_AJ_T0067181.1 MGP_AJ_G0028578.1 mouse_genomes_project 4 112468881 112481858 + Lrrc41 protein_coding processed_transcript MGP_AJ_T0067182.1 MGP_AJ_G0028578.1 mouse_genomes_project 4 112470221 112481927 + Lrrc41 protein_coding processed_transcript MGP_AJ_T0067183.1 MGP_AJ_G0028578.1 mouse_genomes_project 4 112472736 112476375 + Lrrc41 protein_coding processed_transcript MGP_AJ_T0067184.1 MGP_AJ_G0028578.1 mouse_genomes_project 4 112482810 112486638 + Lrrc41 protein_coding processed_transcript MGP_AJ_T0099961.1 MGP_AJ_G0037927.1 mouse_genomes_project 4 126136292 126136432 + Gm24621 snRNA snRNA MGP_AJ_T0007876.1 MGP_AJ_G0006436.1 mouse_genomes_project 4 61014799 61037292 - Gm11217 lincRNA lincRNA MGP_AJ_T0067537.1 MGP_AJ_G0028655.1 mouse_genomes_project 4 115731259 115749302 - MGP_AJ_P0067537 Ybx1 protein_coding protein_coding MGP_AJ_T0067538.1 MGP_AJ_G0028655.1 mouse_genomes_project 4 115731268 115736066 - MGP_AJ_P0067538 Ybx1 protein_coding protein_coding MGP_AJ_T0067539.1 MGP_AJ_G0028655.1 mouse_genomes_project 4 115731444 115732728 - Ybx1 protein_coding processed_transcript MGP_AJ_T0067540.1 MGP_AJ_G0028655.1 mouse_genomes_project 4 115734416 115735460 - Ybx1 protein_coding processed_transcript MGP_AJ_T0007934.1 MGP_AJ_G0006482.1 mouse_genomes_project 4 105444014 105447639 - Gm17354 lincRNA lincRNA MGP_AJ_T0099925.1 MGP_AJ_G0037891.1 mouse_genomes_project 4 65921043 65921150 + Gm24697 snRNA snRNA MGP_AJ_T0011555.1 MGP_AJ_G0009677.1 mouse_genomes_project 4 8477718 8478034 + Gm22477 misc_RNA misc_RNA MGP_AJ_T0010605.1 MGP_AJ_G0008727.1 mouse_genomes_project 4 104248434 104248519 + Gm24804 miRNA miRNA MGP_AJ_T0064887.1 MGP_AJ_G0028053.1 mouse_genomes_project 4 18400465 18464525 + Faxc protein_coding processed_transcript MGP_AJ_T0064888.1 MGP_AJ_G0028053.1 mouse_genomes_project 4 18400467 18465130 + MGP_AJ_P0064888 Faxc protein_coding protein_coding MGP_AJ_T0064889.1 MGP_AJ_G0028053.1 mouse_genomes_project 4 18400469 18422193 + Faxc protein_coding processed_transcript MGP_AJ_T0064890.1 MGP_AJ_G0028053.1 mouse_genomes_project 4 18400493 18467217 + Faxc protein_coding processed_transcript MGP_AJ_T0064891.1 MGP_AJ_G0028053.1 mouse_genomes_project 4 18429929 18432281 + Faxc protein_coding processed_transcript MGP_AJ_T0007870.1 MGP_AJ_G0006430.1 mouse_genomes_project 4 55922602 55929070 + lincRNA lincRNA MGP_AJ_T0068374.1 MGP_AJ_G0028842.1 mouse_genomes_project 4 129471615 129493891 - MGP_AJ_P0068374 protein_coding unknown_likely_coding MGP_AJ_T0068375.1 MGP_AJ_G0028842.1 mouse_genomes_project 4 129485371 129492528 - MGP_AJ_P0068375 protein_coding protein_coding MGP_AJ_T0068692.1 MGP_AJ_G0028914.1 mouse_genomes_project 4 132581404 132585857 + MGP_AJ_P0068692 Gale protein_coding protein_coding MGP_AJ_T0068693.1 MGP_AJ_G0028914.1 mouse_genomes_project 4 132581434 132583307 + MGP_AJ_P0068693 Gale protein_coding protein_coding MGP_AJ_T0068694.1 MGP_AJ_G0028914.1 mouse_genomes_project 4 132581437 132584550 + Gale protein_coding retained_intron MGP_AJ_T0068695.1 MGP_AJ_G0028914.1 mouse_genomes_project 4 132581494 132583297 + MGP_AJ_P0068695 Gale protein_coding protein_coding MGP_AJ_T0068696.1 MGP_AJ_G0028914.1 mouse_genomes_project 4 132582842 132585857 + MGP_AJ_P0068696 Gale protein_coding protein_coding MGP_AJ_T0068697.1 MGP_AJ_G0028914.1 mouse_genomes_project 4 132582872 132584604 + Gale protein_coding retained_intron MGP_AJ_T0068698.1 MGP_AJ_G0028914.1 mouse_genomes_project 4 132583296 132585382 + Gale protein_coding retained_intron MGP_AJ_T0067679.1 MGP_AJ_G0028692.1 mouse_genomes_project 4 119672381 119676831 + MGP_AJ_P0067679 Oxct2a protein_coding protein_coding MGP_AJ_T0065488.1 MGP_AJ_G0028183.1 mouse_genomes_project 4 40473717 40474674 - MGP_AJ_P0065488 Olfr157 protein_coding protein_coding MGP_AJ_T0004497.1 MGP_AJ_G0003910.1 mouse_genomes_project 4 104159995 104162310 - Gm12869 antisense antisense MGP_AJ_T0069173.1 MGP_AJ_G0029037.1 mouse_genomes_project 4 140590411 140612629 + MGP_AJ_P0069173 protein_coding protein_coding MGP_AJ_T0011573.1 MGP_AJ_G0009695.1 mouse_genomes_project 4 86246879 86247028 + Gm27580 misc_RNA misc_RNA MGP_AJ_T0065178.1 MGP_AJ_G0028123.1 mouse_genomes_project 4 38016952 38084967 + MGP_AJ_P0065178 Dnaic1 protein_coding protein_coding MGP_AJ_T0065179.1 MGP_AJ_G0028123.1 mouse_genomes_project 4 38078451 38084967 + Dnaic1 protein_coding retained_intron MGP_AJ_T0065180.1 MGP_AJ_G0028123.1 mouse_genomes_project 4 38080156 38084967 + MGP_AJ_P0065180 Dnaic1 protein_coding protein_coding MGP_AJ_T0001409.1 MGP_AJ_G0001332.1 mouse_genomes_project 4 18898558 18902189 + TEC TEC MGP_AJ_T0066093.1 MGP_AJ_G0028339.1 mouse_genomes_project 4 62378166 62389428 + MGP_AJ_P0066093 Trim32 protein_coding protein_coding MGP_AJ_T0066094.1 MGP_AJ_G0028339.1 mouse_genomes_project 4 62378166 62389428 + MGP_AJ_P0066094 Trim32 protein_coding protein_coding MGP_AJ_T0066095.1 MGP_AJ_G0028339.1 mouse_genomes_project 4 62378429 62386806 + MGP_AJ_P0066095 Trim32 protein_coding protein_coding MGP_AJ_T0066096.1 MGP_AJ_G0028339.1 mouse_genomes_project 4 62378429 62386946 + MGP_AJ_P0066096 Trim32 protein_coding protein_coding MGP_AJ_T0065264.1 MGP_AJ_G0028146.1 mouse_genomes_project 4 38253970 38290207 - MGP_AJ_P0065264 protein_coding protein_coding MGP_AJ_T0068115.1 MGP_AJ_G0028793.1 mouse_genomes_project 4 126296492 126297654 - Ccdc28b protein_coding processed_transcript MGP_AJ_T0068116.1 MGP_AJ_G0028793.1 mouse_genomes_project 4 126296492 126300986 - MGP_AJ_P0068116 Ccdc28b protein_coding protein_coding MGP_AJ_T0068117.1 MGP_AJ_G0028793.1 mouse_genomes_project 4 126296493 126297977 - Ccdc28b protein_coding retained_intron MGP_AJ_T0068118.1 MGP_AJ_G0028793.1 mouse_genomes_project 4 126296494 126298483 - Ccdc28b protein_coding processed_transcript MGP_AJ_T0068119.1 MGP_AJ_G0028793.1 mouse_genomes_project 4 126296494 126300876 - MGP_AJ_P0068119 Ccdc28b protein_coding nonsense_mediated_decay MGP_AJ_T0068120.1 MGP_AJ_G0028793.1 mouse_genomes_project 4 126297537 126300917 - MGP_AJ_P0068120 Ccdc28b protein_coding protein_coding MGP_AJ_T0068121.1 MGP_AJ_G0028793.1 mouse_genomes_project 4 126297810 126299764 - Ccdc28b protein_coding processed_transcript MGP_AJ_T0068122.1 MGP_AJ_G0028793.1 mouse_genomes_project 4 126298064 126300925 - MGP_AJ_P0068122 Ccdc28b protein_coding protein_coding MGP_AJ_T0068123.1 MGP_AJ_G0028793.1 mouse_genomes_project 4 126299216 126300883 - Ccdc28b protein_coding retained_intron MGP_AJ_T0068124.1 MGP_AJ_G0028793.1 mouse_genomes_project 4 126300338 126300938 - Ccdc28b protein_coding retained_intron MGP_AJ_T0014500.1 MGP_AJ_G0012595.1 mouse_genomes_project 4 31370440 31370782 - processed_pseudogene processed_pseudogene MGP_AJ_T0069438.1 MGP_AJ_G0029110.1 mouse_genomes_project 4 147180499 147203380 - MGP_AJ_P0069438 Tmem201 protein_coding protein_coding MGP_AJ_T0069439.1 MGP_AJ_G0029110.1 mouse_genomes_project 4 147180507 147203380 - MGP_AJ_P0069439 Tmem201 protein_coding protein_coding MGP_AJ_T0069440.1 MGP_AJ_G0029110.1 mouse_genomes_project 4 147190045 147195905 - Tmem201 protein_coding retained_intron MGP_AJ_T0069441.1 MGP_AJ_G0029110.1 mouse_genomes_project 4 147190045 147203380 - MGP_AJ_P0069441 Tmem201 protein_coding protein_coding MGP_AJ_T0069442.1 MGP_AJ_G0029110.1 mouse_genomes_project 4 147193969 147203334 - Tmem201 protein_coding retained_intron MGP_AJ_T0069443.1 MGP_AJ_G0029110.1 mouse_genomes_project 4 147196381 147203106 - Tmem201 protein_coding processed_transcript MGP_AJ_T0064589.1 MGP_AJ_G0027981.1 mouse_genomes_project 4 171528 315648 + MGP_AJ_P0064589 Lyn protein_coding protein_coding MGP_AJ_T0064590.1 MGP_AJ_G0027981.1 mouse_genomes_project 4 171540 315647 + MGP_AJ_P0064590 Lyn protein_coding protein_coding MGP_AJ_T0064591.1 MGP_AJ_G0027981.1 mouse_genomes_project 4 171543 241351 + Lyn protein_coding processed_transcript MGP_AJ_T0102582.1 MGP_AJ_G0040324.1 mouse_genomes_project 4 40427780 40428728 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0101248.1 MGP_AJ_G0039214.1 mouse_genomes_project 4 117546713 117546838 - Gm26186 snoRNA snoRNA MGP_AJ_T0099912.1 MGP_AJ_G0037878.1 mouse_genomes_project 4 37794621 37794725 - Gm26084 snRNA snRNA MGP_AJ_T0004576.1 MGP_AJ_G0003971.1 mouse_genomes_project 4 138669301 138684216 + Fhad1os2 antisense antisense MGP_AJ_T0067491.1 MGP_AJ_G0028642.1 mouse_genomes_project 4 115234360 115249191 - MGP_AJ_P0067491 protein_coding protein_coding MGP_AJ_T0065706.1 MGP_AJ_G0028228.1 mouse_genomes_project 4 44132309 44140868 + MGP_AJ_P0065706 protein_coding protein_coding MGP_AJ_T0065707.1 MGP_AJ_G0028228.1 mouse_genomes_project 4 44132415 44140754 + MGP_AJ_P0065707 protein_coding protein_coding MGP_AJ_T0065708.1 MGP_AJ_G0028228.1 mouse_genomes_project 4 44132459 44140720 + MGP_AJ_P0065708 protein_coding protein_coding MGP_AJ_T0065709.1 MGP_AJ_G0028228.1 mouse_genomes_project 4 44132599 44138417 + protein_coding retained_intron MGP_AJ_T0014482.1 MGP_AJ_G0012577.1 mouse_genomes_project 4 27128584 27129147 - processed_pseudogene processed_pseudogene MGP_AJ_T0066443.1 MGP_AJ_G0028422.1 mouse_genomes_project 4 92753124 92782685 - MGP_AJ_P0066443 Cyp2j13 protein_coding protein_coding MGP_AJ_T0066444.1 MGP_AJ_G0028422.1 mouse_genomes_project 4 92768254 92798346 - MGP_AJ_P0066444 Cyp2j13 protein_coding protein_coding MGP_AJ_T0066445.1 MGP_AJ_G0028422.1 mouse_genomes_project 4 92770825 92798352 - MGP_AJ_P0066445 Cyp2j13 protein_coding protein_coding MGP_AJ_T0066446.1 MGP_AJ_G0028422.1 mouse_genomes_project 4 92770825 92798330 - MGP_AJ_P0066446 Cyp2j13 protein_coding protein_coding MGP_AJ_T0010574.1 MGP_AJ_G0008696.1 mouse_genomes_project 4 19230936 19231039 + Gm24078 miRNA miRNA MGP_AJ_T0007971.1 MGP_AJ_G0006509.1 mouse_genomes_project 4 125983592 125992926 + Gm26722 lincRNA lincRNA MGP_AJ_T0001432.1 MGP_AJ_G0001353.1 mouse_genomes_project 4 147545857 147548331 + TEC TEC MGP_AJ_T0065757.1 MGP_AJ_G0028244.1 mouse_genomes_project 4 46239560 46253113 - MGP_AJ_P0065757 Aldob protein_coding protein_coding MGP_AJ_T0065758.1 MGP_AJ_G0028244.1 mouse_genomes_project 4 46240599 46242432 - Aldob protein_coding processed_transcript MGP_AJ_T0065759.1 MGP_AJ_G0028244.1 mouse_genomes_project 4 46242102 46243452 - Aldob protein_coding processed_transcript MGP_AJ_T0067487.1 MGP_AJ_G0028638.1 mouse_genomes_project 4 115125320 115126259 + MGP_AJ_P0067487 Olfr1341 protein_coding protein_coding MGP_AJ_T0004496.1 MGP_AJ_G0003909.1 mouse_genomes_project 4 103935003 103944717 + Gm12802 antisense antisense MGP_AJ_T0068344.1 MGP_AJ_G0028835.1 mouse_genomes_project 4 129204583 129260507 + MGP_AJ_P0068344 Eya3 protein_coding protein_coding MGP_AJ_T0068345.1 MGP_AJ_G0028835.1 mouse_genomes_project 4 129204652 129289768 + MGP_AJ_P0068345 Eya3 protein_coding protein_coding MGP_AJ_T0068346.1 MGP_AJ_G0028835.1 mouse_genomes_project 4 129204654 129264714 + Eya3 protein_coding processed_transcript MGP_AJ_T0068347.1 MGP_AJ_G0028835.1 mouse_genomes_project 4 129204660 129258719 + Eya3 protein_coding processed_transcript MGP_AJ_T0068348.1 MGP_AJ_G0028835.1 mouse_genomes_project 4 129204675 129287161 + Eya3 protein_coding processed_transcript MGP_AJ_T0068349.1 MGP_AJ_G0028835.1 mouse_genomes_project 4 129204675 129289777 + MGP_AJ_P0068349 Eya3 protein_coding protein_coding MGP_AJ_T0068350.1 MGP_AJ_G0028835.1 mouse_genomes_project 4 129204681 129288492 + Eya3 protein_coding processed_transcript MGP_AJ_T0068351.1 MGP_AJ_G0028835.1 mouse_genomes_project 4 129204713 129260692 + Eya3 protein_coding processed_transcript MGP_AJ_T0068352.1 MGP_AJ_G0028835.1 mouse_genomes_project 4 129222257 129288469 + Eya3 protein_coding processed_transcript MGP_AJ_T0068353.1 MGP_AJ_G0028835.1 mouse_genomes_project 4 129266645 129278004 + Eya3 protein_coding processed_transcript MGP_AJ_T0068354.1 MGP_AJ_G0028835.1 mouse_genomes_project 4 129270027 129286672 + Eya3 protein_coding processed_transcript MGP_AJ_T0014680.1 MGP_AJ_G0012775.1 mouse_genomes_project 4 98089808 98090100 + processed_pseudogene processed_pseudogene MGP_AJ_T0014571.1 MGP_AJ_G0012666.1 mouse_genomes_project 4 55129635 55130209 - processed_pseudogene processed_pseudogene MGP_AJ_T0068583.1 MGP_AJ_G0028889.1 mouse_genomes_project 4 131129067 131138766 - MGP_AJ_P0068583 Mtfr1l protein_coding protein_coding MGP_AJ_T0068584.1 MGP_AJ_G0028889.1 mouse_genomes_project 4 131129074 131138885 - MGP_AJ_P0068584 Mtfr1l protein_coding protein_coding MGP_AJ_T0068585.1 MGP_AJ_G0028889.1 mouse_genomes_project 4 131129081 131138796 - MGP_AJ_P0068585 Mtfr1l protein_coding nonsense_mediated_decay MGP_AJ_T0068586.1 MGP_AJ_G0028889.1 mouse_genomes_project 4 131131879 131138756 - Mtfr1l protein_coding retained_intron MGP_AJ_T0068587.1 MGP_AJ_G0028889.1 mouse_genomes_project 4 131132620 131138594 - MGP_AJ_P0068587 Mtfr1l protein_coding protein_coding MGP_AJ_T0068588.1 MGP_AJ_G0028889.1 mouse_genomes_project 4 131132655 131138885 - MGP_AJ_P0068588 Mtfr1l protein_coding protein_coding MGP_AJ_T0068589.1 MGP_AJ_G0028889.1 mouse_genomes_project 4 131132727 131138542 - Mtfr1l protein_coding retained_intron MGP_AJ_T0065120.1 MGP_AJ_G0028110.1 mouse_genomes_project 4 37414564 37469738 + MGP_AJ_P0065120 Nfx1 protein_coding protein_coding MGP_AJ_T0065121.1 MGP_AJ_G0028110.1 mouse_genomes_project 4 37414564 37456254 + MGP_AJ_P0065121 Nfx1 protein_coding protein_coding MGP_AJ_T0065122.1 MGP_AJ_G0028110.1 mouse_genomes_project 4 37414564 37457517 + MGP_AJ_P0065122 Nfx1 protein_coding protein_coding MGP_AJ_T0065123.1 MGP_AJ_G0028110.1 mouse_genomes_project 4 37446155 37455815 + Nfx1 protein_coding processed_transcript MGP_AJ_T0065124.1 MGP_AJ_G0028110.1 mouse_genomes_project 4 37452852 37465953 + Nfx1 protein_coding processed_transcript MGP_AJ_T0065125.1 MGP_AJ_G0028110.1 mouse_genomes_project 4 37464997 37468923 + Nfx1 protein_coding processed_transcript MGP_AJ_T0065126.1 MGP_AJ_G0028110.1 mouse_genomes_project 4 37466948 37468285 + Nfx1 protein_coding processed_transcript MGP_AJ_T0099926.1 MGP_AJ_G0037892.1 mouse_genomes_project 4 79984219 79984326 - Gm23412 snRNA snRNA MGP_AJ_T0014714.1 MGP_AJ_G0012809.1 mouse_genomes_project 4 108561473 108562519 - processed_pseudogene processed_pseudogene MGP_AJ_T0010600.1 MGP_AJ_G0008722.1 mouse_genomes_project 4 91408659 91408740 + Mir872 miRNA miRNA MGP_AJ_T0014678.1 MGP_AJ_G0012773.1 mouse_genomes_project 4 97331760 97332217 + processed_pseudogene processed_pseudogene MGP_AJ_T0101227.1 MGP_AJ_G0039193.1 mouse_genomes_project 4 71411848 71411980 + Gm26379 snoRNA snoRNA MGP_AJ_T0099896.1 MGP_AJ_G0037862.1 mouse_genomes_project 4 11924215 11924322 + Gm24317 snRNA snRNA MGP_AJ_T0068624.1 MGP_AJ_G0028899.1 mouse_genomes_project 4 131822964 131885041 - MGP_AJ_P0068624 Clic4 protein_coding unknown_likely_coding MGP_AJ_T0068625.1 MGP_AJ_G0028899.1 mouse_genomes_project 4 131822968 131885265 - MGP_AJ_P0068625 Clic4 protein_coding protein_coding MGP_AJ_T0068626.1 MGP_AJ_G0028899.1 mouse_genomes_project 4 131833575 131885265 - Clic4 protein_coding retained_intron MGP_AJ_T0014497.1 MGP_AJ_G0012592.1 mouse_genomes_project 4 30871791 30872083 + processed_pseudogene processed_pseudogene MGP_AJ_T0065055.1 MGP_AJ_G0028094.1 mouse_genomes_project 4 31575859 31577731 + MGP_AJ_P0065055 Ifnk protein_coding protein_coding MGP_AJ_T0004536.1 MGP_AJ_G0003939.1 mouse_genomes_project 4 121686375 121690032 - antisense antisense MGP_AJ_T0066257.1 MGP_AJ_G0028368.1 mouse_genomes_project 4 81610014 81857252 + MGP_AJ_P0066257 Cntln protein_coding protein_coding MGP_AJ_T0066258.1 MGP_AJ_G0028368.1 mouse_genomes_project 4 81610109 81678287 + MGP_AJ_P0066258 Cntln protein_coding protein_coding MGP_AJ_T0066259.1 MGP_AJ_G0028368.1 mouse_genomes_project 4 81610170 81857248 + MGP_AJ_P0066259 Cntln protein_coding protein_coding MGP_AJ_T0066260.1 MGP_AJ_G0028368.1 mouse_genomes_project 4 81822802 81857249 + MGP_AJ_P0066260 Cntln protein_coding protein_coding MGP_AJ_T0004463.1 MGP_AJ_G0003886.1 mouse_genomes_project 4 58853036 58860246 + Gm12910 antisense antisense MGP_AJ_T0067006.1 MGP_AJ_G0028538.1 mouse_genomes_project 4 106777299 106782933 + MGP_AJ_P0067006 Dmrta2 protein_coding protein_coding MGP_AJ_T0011569.1 MGP_AJ_G0009691.1 mouse_genomes_project 4 51325833 51326121 + Gm24628 misc_RNA misc_RNA MGP_AJ_T0065789.1 MGP_AJ_G0028254.1 mouse_genomes_project 4 49492388 49493448 - MGP_AJ_P0065789 Olfr273 protein_coding protein_coding MGP_AJ_T0065790.1 MGP_AJ_G0028254.1 mouse_genomes_project 4 49492433 49495341 - MGP_AJ_P0065790 Olfr273 protein_coding protein_coding MGP_AJ_T0014426.1 MGP_AJ_G0012521.1 mouse_genomes_project 4 12520381 12520739 - processed_pseudogene processed_pseudogene MGP_AJ_T0014455.1 MGP_AJ_G0012550.1 mouse_genomes_project 4 20715529 20716732 + processed_pseudogene processed_pseudogene MGP_AJ_T0069750.1 MGP_AJ_G0029166.1 mouse_genomes_project 4 152498554 152502089 - Fam213b protein_coding processed_transcript MGP_AJ_T0069751.1 MGP_AJ_G0029166.1 mouse_genomes_project 4 152499449 152502161 - MGP_AJ_P0069751 Fam213b protein_coding protein_coding MGP_AJ_T0069752.1 MGP_AJ_G0029166.1 mouse_genomes_project 4 152500385 152502186 - MGP_AJ_P0069752 Fam213b protein_coding protein_coding MGP_AJ_T0014826.1 MGP_AJ_G0012921.1 mouse_genomes_project 4 145449255 145450028 + processed_pseudogene processed_pseudogene MGP_AJ_T0004553.1 MGP_AJ_G0003952.1 mouse_genomes_project 4 131046383 131047958 - 1700021N21Rik antisense antisense MGP_AJ_T0065755.1 MGP_AJ_G0028243.1 mouse_genomes_project 4 46224109 46235083 + MGP_AJ_P0065755 Zfp189 protein_coding protein_coding MGP_AJ_T0065756.1 MGP_AJ_G0028243.1 mouse_genomes_project 4 46224150 46235083 + MGP_AJ_P0065756 Zfp189 protein_coding protein_coding MGP_AJ_T0101253.1 MGP_AJ_G0039219.1 mouse_genomes_project 4 123511257 123511390 - Gm25604 snoRNA snoRNA MGP_AJ_T0014522.1 MGP_AJ_G0012617.1 mouse_genomes_project 4 37699914 37700142 + processed_pseudogene processed_pseudogene MGP_AJ_T0007942.1 MGP_AJ_G0006490.1 mouse_genomes_project 4 115505565 115520890 - Gm12866 lincRNA lincRNA MGP_AJ_T0102615.1 MGP_AJ_G0040357.1 mouse_genomes_project 4 119201510 119217840 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0067426.1 MGP_AJ_G0028623.1 mouse_genomes_project 4 114352224 114560790 - MGP_AJ_P0067426 St3gal3 protein_coding protein_coding MGP_AJ_T0067427.1 MGP_AJ_G0028623.1 mouse_genomes_project 4 114352228 114560814 - MGP_AJ_P0067427 St3gal3 protein_coding protein_coding MGP_AJ_T0067428.1 MGP_AJ_G0028623.1 mouse_genomes_project 4 114352230 114560782 - MGP_AJ_P0067428 St3gal3 protein_coding protein_coding MGP_AJ_T0067429.1 MGP_AJ_G0028623.1 mouse_genomes_project 4 114360585 114454594 - MGP_AJ_P0067429 St3gal3 protein_coding protein_coding MGP_AJ_T0067430.1 MGP_AJ_G0028623.1 mouse_genomes_project 4 114360677 114389955 - MGP_AJ_P0067430 St3gal3 protein_coding protein_coding MGP_AJ_T0067488.1 MGP_AJ_G0028639.1 mouse_genomes_project 4 115139890 115140838 + MGP_AJ_P0067488 Olfr1340 protein_coding protein_coding MGP_AJ_T0069789.1 MGP_AJ_G0029173.1 mouse_genomes_project 4 152694463 152755213 + MGP_AJ_P0069789 Morn1 protein_coding protein_coding MGP_AJ_T0069790.1 MGP_AJ_G0029173.1 mouse_genomes_project 4 152694463 152720087 + MGP_AJ_P0069790 Morn1 protein_coding nonsense_mediated_decay MGP_AJ_T0069791.1 MGP_AJ_G0029173.1 mouse_genomes_project 4 152694475 152701009 + MGP_AJ_P0069791 Morn1 protein_coding protein_coding MGP_AJ_T0069792.1 MGP_AJ_G0029173.1 mouse_genomes_project 4 152694489 152701290 + MGP_AJ_P0069792 Morn1 protein_coding protein_coding MGP_AJ_T0069793.1 MGP_AJ_G0029173.1 mouse_genomes_project 4 152694500 152750446 + Morn1 protein_coding processed_transcript MGP_AJ_T0069794.1 MGP_AJ_G0029173.1 mouse_genomes_project 4 152694514 152750424 + Morn1 protein_coding processed_transcript MGP_AJ_T0069795.1 MGP_AJ_G0029173.1 mouse_genomes_project 4 152710107 152738148 + Morn1 protein_coding retained_intron MGP_AJ_T0069796.1 MGP_AJ_G0029173.1 mouse_genomes_project 4 152718595 152737712 + Morn1 protein_coding retained_intron MGP_AJ_T0099982.1 MGP_AJ_G0037948.1 mouse_genomes_project 4 153338384 153338486 - Gm22573 snRNA snRNA MGP_AJ_T0007938.1 MGP_AJ_G0006486.1 mouse_genomes_project 4 112570758 112572249 + Gm12951 lincRNA lincRNA MGP_AJ_T0064836.1 MGP_AJ_G0028040.1 mouse_genomes_project 4 16167073 16212485 + MGP_AJ_P0064836 Gm12353 protein_coding protein_coding MGP_AJ_T0068730.1 MGP_AJ_G0028923.1 mouse_genomes_project 4 132918587 132924241 + MGP_AJ_P0068730 Zfp46 protein_coding protein_coding MGP_AJ_T0068731.1 MGP_AJ_G0028923.1 mouse_genomes_project 4 132918679 132923998 + MGP_AJ_P0068731 Zfp46 protein_coding protein_coding MGP_AJ_T0068732.1 MGP_AJ_G0028923.1 mouse_genomes_project 4 132918973 132920378 + Zfp46 protein_coding processed_transcript MGP_AJ_T0068733.1 MGP_AJ_G0028923.1 mouse_genomes_project 4 132919969 132927880 + MGP_AJ_P0068733 Zfp46 protein_coding protein_coding MGP_AJ_T0068734.1 MGP_AJ_G0028923.1 mouse_genomes_project 4 132920006 132924162 + MGP_AJ_P0068734 Zfp46 protein_coding protein_coding MGP_AJ_T0014766.1 MGP_AJ_G0012861.1 mouse_genomes_project 4 123164648 123165067 + processed_pseudogene processed_pseudogene MGP_AJ_T0069212.1 MGP_AJ_G0029063.1 mouse_genomes_project 4 141710692 141720360 + MGP_AJ_P0069212 Gm13177 protein_coding protein_coding MGP_AJ_T0065214.1 MGP_AJ_G0028131.1 mouse_genomes_project 4 38216648 38226472 + MGP_AJ_P0065214 protein_coding protein_coding MGP_AJ_T0065215.1 MGP_AJ_G0028131.1 mouse_genomes_project 4 38216906 38226472 + MGP_AJ_P0065215 protein_coding protein_coding MGP_AJ_T0065216.1 MGP_AJ_G0028131.1 mouse_genomes_project 4 38216950 38223122 + protein_coding retained_intron MGP_AJ_T0065217.1 MGP_AJ_G0028131.1 mouse_genomes_project 4 38216964 38221005 + protein_coding retained_intron MGP_AJ_T0065218.1 MGP_AJ_G0028131.1 mouse_genomes_project 4 38218761 38226472 + MGP_AJ_P0065218 protein_coding protein_coding MGP_AJ_T0065219.1 MGP_AJ_G0028131.1 mouse_genomes_project 4 38218847 38225048 + protein_coding retained_intron MGP_AJ_T0065220.1 MGP_AJ_G0028131.1 mouse_genomes_project 4 38220542 38226472 + MGP_AJ_P0065220 protein_coding protein_coding MGP_AJ_T0065225.1 MGP_AJ_G0028131.1 mouse_genomes_project 4 38224786 38226472 + protein_coding retained_intron MGP_AJ_T0065228.1 MGP_AJ_G0028131.1 mouse_genomes_project 4 38225435 38226472 + protein_coding retained_intron MGP_AJ_T0067610.1 MGP_AJ_G0028669.1 mouse_genomes_project 4 116998296 117002727 + MGP_AJ_P0067610 Slfnl1 protein_coding protein_coding MGP_AJ_T0069113.1 MGP_AJ_G0029014.1 mouse_genomes_project 4 138454448 138501093 - MGP_AJ_P0069113 Ddi2 protein_coding protein_coding MGP_AJ_T0069114.1 MGP_AJ_G0029014.1 mouse_genomes_project 4 138460463 138501093 - MGP_AJ_P0069114 Ddi2 protein_coding protein_coding MGP_AJ_T0014659.1 MGP_AJ_G0012754.1 mouse_genomes_project 4 91137810 91138398 + processed_pseudogene processed_pseudogene MGP_AJ_T0099947.1 MGP_AJ_G0037913.1 mouse_genomes_project 4 113075178 113075288 + Gm25137 snRNA snRNA MGP_AJ_T0066935.1 MGP_AJ_G0028526.1 mouse_genomes_project 4 105652879 105654101 - MGP_AJ_P0066935 A730015C16Rik protein_coding protein_coding MGP_AJ_T0004542.1 MGP_AJ_G0003944.1 mouse_genomes_project 4 126170582 126188569 - Gm12979 antisense antisense MGP_AJ_T0069819.1 MGP_AJ_G0029177.1 mouse_genomes_project 4 152998959 153014227 - Gabrd protein_coding processed_transcript MGP_AJ_T0069820.1 MGP_AJ_G0029177.1 mouse_genomes_project 4 152998959 153014292 - MGP_AJ_P0069820 Gabrd protein_coding protein_coding MGP_AJ_T0069821.1 MGP_AJ_G0029177.1 mouse_genomes_project 4 153002544 153014216 - Gabrd protein_coding processed_transcript MGP_AJ_T0004567.1 MGP_AJ_G0003964.1 mouse_genomes_project 4 136874237 136875998 + Gm13029 antisense antisense MGP_AJ_T0064633.1 MGP_AJ_G0027992.1 mouse_genomes_project 4 2798315 2808507 - MGP_AJ_P0064633 Cyp7a1 protein_coding protein_coding MGP_AJ_T0064634.1 MGP_AJ_G0027992.1 mouse_genomes_project 4 2805668 2808509 - Cyp7a1 protein_coding processed_transcript MGP_AJ_T0069152.1 MGP_AJ_G0029025.1 mouse_genomes_project 4 139922790 140040505 - MGP_AJ_P0069152 Prdm2 protein_coding protein_coding MGP_AJ_T0069153.1 MGP_AJ_G0029025.1 mouse_genomes_project 4 139977734 140022643 - MGP_AJ_P0069153 Prdm2 protein_coding protein_coding MGP_AJ_T0069154.1 MGP_AJ_G0029025.1 mouse_genomes_project 4 139977758 140040509 - MGP_AJ_P0069154 Prdm2 protein_coding protein_coding MGP_AJ_T0069155.1 MGP_AJ_G0029025.1 mouse_genomes_project 4 139996444 140040795 - Prdm2 protein_coding processed_transcript MGP_AJ_T0067653.1 MGP_AJ_G0028684.1 mouse_genomes_project 4 117885729 118080380 - MGP_AJ_P0067653 Gm12886 protein_coding protein_coding MGP_AJ_T0065265.1 MGP_AJ_G0028147.1 mouse_genomes_project 4 39158142 39158749 - MGP_AJ_P0065265 Gm10931 protein_coding protein_coding MGP_AJ_T0067168.1 MGP_AJ_G0028576.1 mouse_genomes_project 4 112425825 112446278 - MGP_AJ_P0067168 protein_coding protein_coding MGP_AJ_T0067169.1 MGP_AJ_G0028576.1 mouse_genomes_project 4 112425988 112440892 - MGP_AJ_P0067169 protein_coding nonsense_mediated_decay MGP_AJ_T0067170.1 MGP_AJ_G0028576.1 mouse_genomes_project 4 112426890 112445782 - MGP_AJ_P0067170 protein_coding protein_coding MGP_AJ_T0067171.1 MGP_AJ_G0028576.1 mouse_genomes_project 4 112433748 112439362 - protein_coding processed_transcript MGP_AJ_T0067172.1 MGP_AJ_G0028576.1 mouse_genomes_project 4 112438234 112440761 - protein_coding retained_intron MGP_AJ_T0067173.1 MGP_AJ_G0028576.1 mouse_genomes_project 4 112440861 112441798 - protein_coding processed_transcript MGP_AJ_T0007813.1 MGP_AJ_G0006381.1 mouse_genomes_project 4 9634848 9656180 + Gm11820 lincRNA lincRNA MGP_AJ_T0065554.1 MGP_AJ_G0028193.1 mouse_genomes_project 4 41417514 41423609 + MGP_AJ_P0065554 Zcchc7 protein_coding protein_coding MGP_AJ_T0065555.1 MGP_AJ_G0028193.1 mouse_genomes_project 4 41418205 41594321 + MGP_AJ_P0065555 Zcchc7 protein_coding protein_coding MGP_AJ_T0065556.1 MGP_AJ_G0028193.1 mouse_genomes_project 4 41418225 41573113 + Zcchc7 protein_coding retained_intron MGP_AJ_T0065557.1 MGP_AJ_G0028193.1 mouse_genomes_project 4 41418276 41423866 + MGP_AJ_P0065557 Zcchc7 protein_coding protein_coding MGP_AJ_T0065558.1 MGP_AJ_G0028193.1 mouse_genomes_project 4 41418284 41571932 + MGP_AJ_P0065558 Zcchc7 protein_coding nonsense_mediated_decay MGP_AJ_T0065559.1 MGP_AJ_G0028193.1 mouse_genomes_project 4 41422081 41574175 + Zcchc7 protein_coding retained_intron MGP_AJ_T0065560.1 MGP_AJ_G0028193.1 mouse_genomes_project 4 41569317 41593480 + Zcchc7 protein_coding processed_transcript MGP_AJ_T0065561.1 MGP_AJ_G0028193.1 mouse_genomes_project 4 41585233 41594333 + MGP_AJ_P0065561 Zcchc7 protein_coding protein_coding MGP_AJ_T0065562.1 MGP_AJ_G0028193.1 mouse_genomes_project 4 41588110 41593480 + MGP_AJ_P0065562 Zcchc7 protein_coding nonsense_mediated_decay MGP_AJ_T0008038.1 MGP_AJ_G0006560.1 mouse_genomes_project 4 151508290 151509571 + Gm13115 lincRNA lincRNA MGP_AJ_T0004418.1 MGP_AJ_G0003849.1 mouse_genomes_project 4 2881093 2885460 - 4930430E12Rik antisense antisense MGP_AJ_T0004424.1 MGP_AJ_G0003854.1 mouse_genomes_project 4 8152561 8156430 - Gm11832 antisense antisense MGP_AJ_T0007964.1 MGP_AJ_G0006503.1 mouse_genomes_project 4 124474840 124476376 - 1700112K13Rik lincRNA lincRNA MGP_AJ_T0102598.1 MGP_AJ_G0040340.1 mouse_genomes_project 4 93072229 93089415 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0014515.1 MGP_AJ_G0012610.1 mouse_genomes_project 4 36340004 36340959 - processed_pseudogene processed_pseudogene MGP_AJ_T0102596.1 MGP_AJ_G0040338.1 mouse_genomes_project 4 92899315 92899493 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0070007.1 MGP_AJ_G0029212.1 mouse_genomes_project 4 153769426 153773223 - Agrn protein_coding retained_intron MGP_AJ_T0070008.1 MGP_AJ_G0029212.1 mouse_genomes_project 4 153769426 153790020 - MGP_AJ_P0070008 Agrn protein_coding protein_coding MGP_AJ_T0070009.1 MGP_AJ_G0029212.1 mouse_genomes_project 4 153769426 153790020 - MGP_AJ_P0070009 Agrn protein_coding protein_coding MGP_AJ_T0070010.1 MGP_AJ_G0029212.1 mouse_genomes_project 4 153769426 153790020 - MGP_AJ_P0070010 Agrn protein_coding protein_coding MGP_AJ_T0070011.1 MGP_AJ_G0029212.1 mouse_genomes_project 4 153769430 153790226 - Agrn protein_coding retained_intron MGP_AJ_T0070012.1 MGP_AJ_G0029212.1 mouse_genomes_project 4 153769914 153801593 - MGP_AJ_P0070012 Agrn protein_coding protein_coding MGP_AJ_T0070013.1 MGP_AJ_G0029212.1 mouse_genomes_project 4 153776431 153777863 - Agrn protein_coding processed_transcript MGP_AJ_T0018050.1 MGP_AJ_G0015525.1 mouse_genomes_project 4 54414484 54420975 - Gm12526 processed_transcript processed_transcript MGP_AJ_T0008001.1 MGP_AJ_G0006527.1 mouse_genomes_project 4 132241133 132244677 + 1700029M20Rik lincRNA lincRNA MGP_AJ_T0008002.1 MGP_AJ_G0006527.1 mouse_genomes_project 4 132241252 132242964 + 1700029M20Rik lincRNA lincRNA MGP_AJ_T0008003.1 MGP_AJ_G0006527.1 mouse_genomes_project 4 132241296 132242964 + 1700029M20Rik lincRNA lincRNA MGP_AJ_T0008004.1 MGP_AJ_G0006527.1 mouse_genomes_project 4 132241731 132242464 + 1700029M20Rik lincRNA lincRNA MGP_AJ_T0010644.1 MGP_AJ_G0008766.1 mouse_genomes_project 4 138113538 138113615 + Gm25690 miRNA miRNA MGP_AJ_T0014466.1 MGP_AJ_G0012561.1 mouse_genomes_project 4 23041705 23042383 - processed_pseudogene processed_pseudogene MGP_AJ_T0066404.1 MGP_AJ_G0028418.1 mouse_genomes_project 4 91659728 91698522 - MGP_AJ_P0066404 Mysm1 protein_coding protein_coding MGP_AJ_T0066405.1 MGP_AJ_G0028418.1 mouse_genomes_project 4 91659751 91671832 - Mysm1 protein_coding processed_transcript MGP_AJ_T0066406.1 MGP_AJ_G0028418.1 mouse_genomes_project 4 91664889 91671963 - Mysm1 protein_coding processed_transcript MGP_AJ_T0066407.1 MGP_AJ_G0028418.1 mouse_genomes_project 4 91682824 91698497 - Mysm1 protein_coding processed_transcript MGP_AJ_T0066408.1 MGP_AJ_G0028418.1 mouse_genomes_project 4 91684051 91698464 - Mysm1 protein_coding processed_transcript MGP_AJ_T0066409.1 MGP_AJ_G0028418.1 mouse_genomes_project 4 91684091 91689117 - Mysm1 protein_coding processed_transcript MGP_AJ_T0066410.1 MGP_AJ_G0028418.1 mouse_genomes_project 4 91684183 91698500 - Mysm1 protein_coding processed_transcript MGP_AJ_T0066411.1 MGP_AJ_G0028418.1 mouse_genomes_project 4 91688744 91698475 - Mysm1 protein_coding processed_transcript MGP_AJ_T0066412.1 MGP_AJ_G0028418.1 mouse_genomes_project 4 91690910 91698497 - Mysm1 protein_coding processed_transcript MGP_AJ_T0004623.1 MGP_AJ_G0004004.1 mouse_genomes_project 4 153457788 153458475 - Mxra8os antisense antisense MGP_AJ_T0067079.1 MGP_AJ_G0028549.1 mouse_genomes_project 4 110270716 110319343 - protein_coding retained_intron MGP_AJ_T0067272.1 MGP_AJ_G0028595.1 mouse_genomes_project 4 113121583 113204737 + MGP_AJ_P0067272 Tesk2 protein_coding protein_coding MGP_AJ_T0067273.1 MGP_AJ_G0028595.1 mouse_genomes_project 4 113121604 113206451 + MGP_AJ_P0067273 Tesk2 protein_coding protein_coding MGP_AJ_T0067274.1 MGP_AJ_G0028595.1 mouse_genomes_project 4 113142499 113204597 + MGP_AJ_P0067274 Tesk2 protein_coding protein_coding MGP_AJ_T0067275.1 MGP_AJ_G0028595.1 mouse_genomes_project 4 113172359 113202758 + Tesk2 protein_coding processed_transcript MGP_AJ_T0101802.1 MGP_AJ_G0039711.1 mouse_genomes_project 4 40770419 40772650 + transcribed_processed_pseudogene processed_transcript MGP_AJ_T0101803.1 MGP_AJ_G0039711.1 mouse_genomes_project 4 40771764 40772070 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0014516.1 MGP_AJ_G0012611.1 mouse_genomes_project 4 36507695 36509581 + processed_pseudogene processed_pseudogene MGP_AJ_T0066285.1 MGP_AJ_G0028374.1 mouse_genomes_project 4 83429954 83436798 - Plin2 protein_coding processed_transcript MGP_AJ_T0066286.1 MGP_AJ_G0028374.1 mouse_genomes_project 4 83434679 83448635 - MGP_AJ_P0066286 Plin2 protein_coding protein_coding MGP_AJ_T0066287.1 MGP_AJ_G0028374.1 mouse_genomes_project 4 83435021 83436759 - Plin2 protein_coding processed_transcript MGP_AJ_T0066288.1 MGP_AJ_G0028374.1 mouse_genomes_project 4 83435270 83437263 - Plin2 protein_coding processed_transcript MGP_AJ_T0066289.1 MGP_AJ_G0028374.1 mouse_genomes_project 4 83438235 83443573 - MGP_AJ_P0066289 Plin2 protein_coding protein_coding MGP_AJ_T0066290.1 MGP_AJ_G0028374.1 mouse_genomes_project 4 83440058 83448135 - MGP_AJ_P0066290 Plin2 protein_coding protein_coding MGP_AJ_T0066291.1 MGP_AJ_G0028374.1 mouse_genomes_project 4 83440058 83448343 - MGP_AJ_P0066291 Plin2 protein_coding protein_coding MGP_AJ_T0066292.1 MGP_AJ_G0028374.1 mouse_genomes_project 4 83446239 83448561 - Plin2 protein_coding processed_transcript MGP_AJ_T0068598.1 MGP_AJ_G0028893.1 mouse_genomes_project 4 131410307 131418769 - Tmem57 protein_coding processed_transcript MGP_AJ_T0068599.1 MGP_AJ_G0028893.1 mouse_genomes_project 4 131410307 131460887 - MGP_AJ_P0068599 Tmem57 protein_coding protein_coding MGP_AJ_T0068600.1 MGP_AJ_G0028893.1 mouse_genomes_project 4 131418749 131460691 - MGP_AJ_P0068600 Tmem57 protein_coding nonsense_mediated_decay MGP_AJ_T0068601.1 MGP_AJ_G0028893.1 mouse_genomes_project 4 131435913 131460805 - MGP_AJ_P0068601 Tmem57 protein_coding nonsense_mediated_decay MGP_AJ_T0068602.1 MGP_AJ_G0028893.1 mouse_genomes_project 4 131444795 131460859 - Tmem57 protein_coding retained_intron MGP_AJ_T0069199.1 MGP_AJ_G0029052.1 mouse_genomes_project 4 141402945 141407100 + MGP_AJ_P0069199 protein_coding protein_coding MGP_AJ_T0067920.1 MGP_AJ_G0028750.1 mouse_genomes_project 4 123700966 123715350 - MGP_AJ_P0067920 Zmym1 protein_coding protein_coding MGP_AJ_T0067921.1 MGP_AJ_G0028750.1 mouse_genomes_project 4 123701465 123713189 - MGP_AJ_P0067921 Zmym1 protein_coding protein_coding MGP_AJ_T0067922.1 MGP_AJ_G0028750.1 mouse_genomes_project 4 123701514 123715258 - Zmym1 protein_coding processed_transcript MGP_AJ_T0067923.1 MGP_AJ_G0028750.1 mouse_genomes_project 4 123701514 123715322 - MGP_AJ_P0067923 Zmym1 protein_coding protein_coding MGP_AJ_T0067924.1 MGP_AJ_G0028750.1 mouse_genomes_project 4 123702537 123713084 - Zmym1 protein_coding processed_transcript MGP_AJ_T0067925.1 MGP_AJ_G0028750.1 mouse_genomes_project 4 123708399 123711777 - Zmym1 protein_coding processed_transcript MGP_AJ_T0067926.1 MGP_AJ_G0028750.1 mouse_genomes_project 4 123708438 123715284 - MGP_AJ_P0067926 Zmym1 protein_coding protein_coding MGP_AJ_T0098681.1 MGP_AJ_G0036665.1 mouse_genomes_project 4 79172501 79172606 + n-R5s188 rRNA rRNA MGP_AJ_T0007843.1 MGP_AJ_G0006410.1 mouse_genomes_project 4 42358669 42398503 + Gm829 lincRNA lincRNA MGP_AJ_T0007844.1 MGP_AJ_G0006410.1 mouse_genomes_project 4 42358669 42368047 + Gm829 lincRNA lincRNA MGP_AJ_T0014604.1 MGP_AJ_G0012699.1 mouse_genomes_project 4 71843469 71843670 - processed_pseudogene processed_pseudogene MGP_AJ_T0067817.1 MGP_AJ_G0028730.1 mouse_genomes_project 4 122720695 122761265 + MGP_AJ_P0067817 Stk40 protein_coding protein_coding MGP_AJ_T0067818.1 MGP_AJ_G0028730.1 mouse_genomes_project 4 122720710 122761265 + MGP_AJ_P0067818 Stk40 protein_coding protein_coding MGP_AJ_T0067819.1 MGP_AJ_G0028730.1 mouse_genomes_project 4 122720739 122745272 + MGP_AJ_P0067819 Stk40 protein_coding protein_coding MGP_AJ_T0067820.1 MGP_AJ_G0028730.1 mouse_genomes_project 4 122720773 122736909 + Stk40 protein_coding processed_transcript MGP_AJ_T0067821.1 MGP_AJ_G0028730.1 mouse_genomes_project 4 122737482 122749105 + MGP_AJ_P0067821 Stk40 protein_coding protein_coding MGP_AJ_T0067822.1 MGP_AJ_G0028730.1 mouse_genomes_project 4 122748955 122753049 + Stk40 protein_coding processed_transcript MGP_AJ_T0014794.1 MGP_AJ_G0012889.1 mouse_genomes_project 4 132020709 132021177 - processed_pseudogene processed_pseudogene MGP_AJ_T0067472.1 MGP_AJ_G0028632.1 mouse_genomes_project 4 114944496 114947354 + MGP_AJ_P0067472 2610528J11Rik protein_coding protein_coding MGP_AJ_T0067473.1 MGP_AJ_G0028632.1 mouse_genomes_project 4 114944740 114947727 + MGP_AJ_P0067473 2610528J11Rik protein_coding protein_coding MGP_AJ_T0067648.1 MGP_AJ_G0028681.1 mouse_genomes_project 4 117577695 117581271 - MGP_AJ_P0067648 Tmco2 protein_coding protein_coding MGP_AJ_T0064839.1 MGP_AJ_G0028042.1 mouse_genomes_project 4 16361331 16393098 + MGP_AJ_P0064839 Slc7a13 protein_coding protein_coding MGP_AJ_T0068065.1 MGP_AJ_G0028785.1 mouse_genomes_project 4 126192350 126194754 + MGP_AJ_P0068065 Marcksl1 protein_coding protein_coding MGP_AJ_T0014802.1 MGP_AJ_G0012897.1 mouse_genomes_project 4 133885831 133886477 - processed_pseudogene processed_pseudogene MGP_AJ_T0064658.1 MGP_AJ_G0027996.1 mouse_genomes_project 4 4658375 4749965 - MGP_AJ_P0064658 Car8 protein_coding protein_coding MGP_AJ_T0007944.1 MGP_AJ_G0006492.1 mouse_genomes_project 4 120465371 120471575 - Gm26606 lincRNA lincRNA MGP_AJ_T0014745.1 MGP_AJ_G0012840.1 mouse_genomes_project 4 117377129 117377567 + processed_pseudogene processed_pseudogene MGP_AJ_T0014541.1 MGP_AJ_G0012636.1 mouse_genomes_project 4 46760380 46760875 - processed_pseudogene processed_pseudogene MGP_AJ_T0069918.1 MGP_AJ_G0029197.1 mouse_genomes_project 4 153457976 153460424 + MGP_AJ_P0069918 Mxra8 protein_coding protein_coding MGP_AJ_T0069919.1 MGP_AJ_G0029197.1 mouse_genomes_project 4 153458022 153462328 + MGP_AJ_P0069919 Mxra8 protein_coding protein_coding MGP_AJ_T0069920.1 MGP_AJ_G0029197.1 mouse_genomes_project 4 153458126 153459575 + Mxra8 protein_coding retained_intron MGP_AJ_T0069921.1 MGP_AJ_G0029197.1 mouse_genomes_project 4 153460589 153461196 + Mxra8 protein_coding retained_intron MGP_AJ_T0069922.1 MGP_AJ_G0029197.1 mouse_genomes_project 4 153460672 153461696 + Mxra8 protein_coding retained_intron MGP_AJ_T0069923.1 MGP_AJ_G0029197.1 mouse_genomes_project 4 153460693 153461813 + Mxra8 protein_coding retained_intron MGP_AJ_T0069924.1 MGP_AJ_G0029197.1 mouse_genomes_project 4 153461144 153462005 + Mxra8 protein_coding processed_transcript MGP_AJ_T0101198.1 MGP_AJ_G0039164.1 mouse_genomes_project 4 35761975 35762101 + Gm23607 snoRNA snoRNA MGP_AJ_T0068557.1 MGP_AJ_G0028882.1 mouse_genomes_project 4 130913161 130927670 + MGP_AJ_P0068557 Trim63 protein_coding protein_coding MGP_AJ_T0068558.1 MGP_AJ_G0028882.1 mouse_genomes_project 4 130913163 130927648 + MGP_AJ_P0068558 Trim63 protein_coding protein_coding MGP_AJ_T0068559.1 MGP_AJ_G0028882.1 mouse_genomes_project 4 130913253 130915419 + Trim63 protein_coding retained_intron MGP_AJ_T0068560.1 MGP_AJ_G0028882.1 mouse_genomes_project 4 130918029 130927667 + Trim63 protein_coding processed_transcript MGP_AJ_T0014810.1 MGP_AJ_G0012905.1 mouse_genomes_project 4 138124196 138124400 - processed_pseudogene processed_pseudogene MGP_AJ_T0007890.1 MGP_AJ_G0006449.1 mouse_genomes_project 4 81455499 81456316 + Gm12415 lincRNA lincRNA MGP_AJ_T0066082.1 MGP_AJ_G0028333.1 mouse_genomes_project 4 60432104 60433125 - Gm11214 protein_coding translated_processed_pseudogene MGP_AJ_T0066083.1 MGP_AJ_G0028333.1 mouse_genomes_project 4 60432104 60432656 - MGP_AJ_P0066083 Gm11214 protein_coding protein_coding MGP_AJ_T0067767.1 MGP_AJ_G0028715.1 mouse_genomes_project 4 121452031 121456604 + MGP_AJ_P0067767 Yrdc protein_coding protein_coding MGP_AJ_T0067768.1 MGP_AJ_G0028715.1 mouse_genomes_project 4 121452178 121456437 + MGP_AJ_P0067768 Yrdc protein_coding protein_coding MGP_AJ_T0067769.1 MGP_AJ_G0028715.1 mouse_genomes_project 4 121453258 121456080 + Yrdc protein_coding retained_intron MGP_AJ_T0014771.1 MGP_AJ_G0012866.1 mouse_genomes_project 4 123700255 123700475 + processed_pseudogene processed_pseudogene MGP_AJ_T0068249.1 MGP_AJ_G0028817.1 mouse_genomes_project 4 128387977 128412105 + MGP_AJ_P0068249 Mecr protein_coding protein_coding MGP_AJ_T0068250.1 MGP_AJ_G0028817.1 mouse_genomes_project 4 128388000 128405186 + MGP_AJ_P0068250 Mecr protein_coding protein_coding MGP_AJ_T0068251.1 MGP_AJ_G0028817.1 mouse_genomes_project 4 128388012 128388515 + Mecr protein_coding processed_transcript MGP_AJ_T0068252.1 MGP_AJ_G0028817.1 mouse_genomes_project 4 128398011 128405321 + Mecr protein_coding processed_transcript MGP_AJ_T0068253.1 MGP_AJ_G0028817.1 mouse_genomes_project 4 128398070 128402494 + Mecr protein_coding processed_transcript MGP_AJ_T0068254.1 MGP_AJ_G0028817.1 mouse_genomes_project 4 128402059 128409651 + Mecr protein_coding processed_transcript MGP_AJ_T0068255.1 MGP_AJ_G0028817.1 mouse_genomes_project 4 128402085 128412105 + Mecr protein_coding processed_transcript MGP_AJ_T0068256.1 MGP_AJ_G0028817.1 mouse_genomes_project 4 128404555 128409393 + Mecr protein_coding processed_transcript MGP_AJ_T0068257.1 MGP_AJ_G0028817.1 mouse_genomes_project 4 128406032 128411920 + Mecr protein_coding processed_transcript MGP_AJ_T0068258.1 MGP_AJ_G0028817.1 mouse_genomes_project 4 128409096 128412095 + Mecr protein_coding processed_transcript MGP_AJ_T0099979.1 MGP_AJ_G0037945.1 mouse_genomes_project 4 146972657 146972761 - Gm24381 snRNA snRNA MGP_AJ_T0068898.1 MGP_AJ_G0028963.1 mouse_genomes_project 4 135508352 135528627 - MGP_AJ_P0068898 Pla2g5 protein_coding protein_coding MGP_AJ_T0068899.1 MGP_AJ_G0028963.1 mouse_genomes_project 4 135508352 135528621 - MGP_AJ_P0068899 Pla2g5 protein_coding protein_coding MGP_AJ_T0068900.1 MGP_AJ_G0028963.1 mouse_genomes_project 4 135508357 135574554 - MGP_AJ_P0068900 Pla2g5 protein_coding protein_coding MGP_AJ_T0068901.1 MGP_AJ_G0028963.1 mouse_genomes_project 4 135509459 135521531 - MGP_AJ_P0068901 Pla2g5 protein_coding protein_coding MGP_AJ_T0068902.1 MGP_AJ_G0028963.1 mouse_genomes_project 4 135509676 135521577 - Pla2g5 protein_coding processed_transcript MGP_AJ_T0068903.1 MGP_AJ_G0028963.1 mouse_genomes_project 4 135513671 135528623 - Pla2g5 protein_coding processed_transcript MGP_AJ_T0068904.1 MGP_AJ_G0028963.1 mouse_genomes_project 4 135513685 135528594 - Pla2g5 protein_coding processed_transcript MGP_AJ_T0068905.1 MGP_AJ_G0028963.1 mouse_genomes_project 4 135515291 135519189 - Pla2g5 protein_coding processed_transcript MGP_AJ_T0068906.1 MGP_AJ_G0028963.1 mouse_genomes_project 4 135570277 135574534 - Pla2g5 protein_coding processed_transcript MGP_AJ_T0101235.1 MGP_AJ_G0039201.1 mouse_genomes_project 4 90849172 90849301 + Gm23836 snoRNA snoRNA MGP_AJ_T0099914.1 MGP_AJ_G0037880.1 mouse_genomes_project 4 40728570 40728682 - Gm22706 snRNA snRNA MGP_AJ_T0007919.1 MGP_AJ_G0006473.1 mouse_genomes_project 4 100175771 100288579 + Gm12718 lincRNA lincRNA MGP_AJ_T0007920.1 MGP_AJ_G0006473.1 mouse_genomes_project 4 100175792 100288561 + Gm12718 lincRNA lincRNA MGP_AJ_T0068876.1 MGP_AJ_G0028954.1 mouse_genomes_project 4 135038997 135044222 - Cda protein_coding retained_intron MGP_AJ_T0068877.1 MGP_AJ_G0028954.1 mouse_genomes_project 4 135039101 135071185 - MGP_AJ_P0068877 Cda protein_coding protein_coding MGP_AJ_T0068781.1 MGP_AJ_G0028937.1 mouse_genomes_project 4 133942842 133966092 + MGP_AJ_P0068781 Wnt4 protein_coding protein_coding MGP_AJ_T0014434.1 MGP_AJ_G0012529.1 mouse_genomes_project 4 13789357 13789618 - processed_pseudogene processed_pseudogene MGP_AJ_T0067515.1 MGP_AJ_G0028650.1 mouse_genomes_project 4 115648758 115654748 + MGP_AJ_P0067515 Svbp protein_coding protein_coding MGP_AJ_T0067516.1 MGP_AJ_G0028650.1 mouse_genomes_project 4 115648859 115654748 + MGP_AJ_P0067516 Svbp protein_coding protein_coding MGP_AJ_T0067517.1 MGP_AJ_G0028650.1 mouse_genomes_project 4 115648948 115654748 + MGP_AJ_P0067517 Svbp protein_coding protein_coding MGP_AJ_T0102580.1 MGP_AJ_G0040322.1 mouse_genomes_project 4 38253879 39337628 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0014554.1 MGP_AJ_G0012649.1 mouse_genomes_project 4 50299497 50300546 + processed_pseudogene processed_pseudogene MGP_AJ_T0064736.1 MGP_AJ_G0028009.1 mouse_genomes_project 4 7866933 7921525 - MGP_AJ_P0064736 Esrp1 protein_coding protein_coding MGP_AJ_T0064737.1 MGP_AJ_G0028009.1 mouse_genomes_project 4 7866933 7921629 - MGP_AJ_P0064737 Esrp1 protein_coding protein_coding MGP_AJ_T0064738.1 MGP_AJ_G0028009.1 mouse_genomes_project 4 7867038 7921629 - MGP_AJ_P0064738 Esrp1 protein_coding protein_coding MGP_AJ_T0064739.1 MGP_AJ_G0028009.1 mouse_genomes_project 4 7868005 7902043 - MGP_AJ_P0064739 Esrp1 protein_coding protein_coding MGP_AJ_T0064740.1 MGP_AJ_G0028009.1 mouse_genomes_project 4 7868005 7921525 - MGP_AJ_P0064740 Esrp1 protein_coding protein_coding MGP_AJ_T0064741.1 MGP_AJ_G0028009.1 mouse_genomes_project 4 7875577 7879123 - Esrp1 protein_coding processed_transcript MGP_AJ_T0064742.1 MGP_AJ_G0028009.1 mouse_genomes_project 4 7892452 7921240 - MGP_AJ_P0064742 Esrp1 protein_coding protein_coding MGP_AJ_T0065453.1 MGP_AJ_G0028172.1 mouse_genomes_project 4 40224917 40226196 - MGP_AJ_P0065453 Msmp protein_coding protein_coding MGP_AJ_T0069245.1 MGP_AJ_G0029073.1 mouse_genomes_project 4 145275204 145276514 + MGP_AJ_P0069245 Fv1 protein_coding protein_coding MGP_AJ_T0014640.1 MGP_AJ_G0012735.1 mouse_genomes_project 4 84848104 84848342 + processed_pseudogene processed_pseudogene MGP_AJ_T0004600.1 MGP_AJ_G0003988.1 mouse_genomes_project 4 147211765 147214285 + antisense antisense MGP_AJ_T0004601.1 MGP_AJ_G0003988.1 mouse_genomes_project 4 147211765 147214160 + antisense antisense MGP_AJ_T0018048.1 MGP_AJ_G0015524.1 mouse_genomes_project 4 49835511 49847828 - 4930412L05Rik processed_transcript processed_transcript MGP_AJ_T0018049.1 MGP_AJ_G0015524.1 mouse_genomes_project 4 49844965 49848124 - 4930412L05Rik processed_transcript processed_transcript MGP_AJ_T0065425.1 MGP_AJ_G0028168.1 mouse_genomes_project 4 40173303 40204120 - MGP_AJ_P0065425 Tln1 protein_coding protein_coding MGP_AJ_T0065426.1 MGP_AJ_G0028168.1 mouse_genomes_project 4 40187085 40189323 - MGP_AJ_P0065426 Tln1 protein_coding protein_coding MGP_AJ_T0065427.1 MGP_AJ_G0028168.1 mouse_genomes_project 4 40188497 40192947 - MGP_AJ_P0065427 Tln1 protein_coding protein_coding MGP_AJ_T0065428.1 MGP_AJ_G0028168.1 mouse_genomes_project 4 40195139 40196139 - Tln1 protein_coding processed_transcript MGP_AJ_T0065429.1 MGP_AJ_G0028168.1 mouse_genomes_project 4 40196201 40203855 - Tln1 protein_coding processed_transcript MGP_AJ_T0065430.1 MGP_AJ_G0028168.1 mouse_genomes_project 4 40196793 40200145 - MGP_AJ_P0065430 Tln1 protein_coding protein_coding MGP_AJ_T0065431.1 MGP_AJ_G0028168.1 mouse_genomes_project 4 40197251 40197634 - Tln1 protein_coding processed_transcript MGP_AJ_T0065432.1 MGP_AJ_G0028168.1 mouse_genomes_project 4 40201027 40204388 - Tln1 protein_coding processed_transcript MGP_AJ_T0065897.1 MGP_AJ_G0028285.1 mouse_genomes_project 4 54943383 55032208 + MGP_AJ_P0065897 Musk protein_coding protein_coding MGP_AJ_T0065898.1 MGP_AJ_G0028285.1 mouse_genomes_project 4 54943385 55032208 + MGP_AJ_P0065898 Musk protein_coding protein_coding MGP_AJ_T0065899.1 MGP_AJ_G0028285.1 mouse_genomes_project 4 54943385 55032208 + MGP_AJ_P0065899 Musk protein_coding protein_coding MGP_AJ_T0065900.1 MGP_AJ_G0028285.1 mouse_genomes_project 4 54943385 55032209 + MGP_AJ_P0065900 Musk protein_coding protein_coding MGP_AJ_T0065901.1 MGP_AJ_G0028285.1 mouse_genomes_project 4 54943385 55032209 + MGP_AJ_P0065901 Musk protein_coding protein_coding MGP_AJ_T0065902.1 MGP_AJ_G0028285.1 mouse_genomes_project 4 54943385 55032209 + MGP_AJ_P0065902 Musk protein_coding protein_coding MGP_AJ_T0065903.1 MGP_AJ_G0028285.1 mouse_genomes_project 4 54943385 55032208 + MGP_AJ_P0065903 Musk protein_coding protein_coding MGP_AJ_T0065904.1 MGP_AJ_G0028285.1 mouse_genomes_project 4 54943588 54962887 + Musk protein_coding processed_transcript MGP_AJ_T0066432.1 MGP_AJ_G0028421.1 mouse_genomes_project 4 92696141 92751004 + MGP_AJ_P0066432 Hook1 protein_coding protein_coding MGP_AJ_T0066433.1 MGP_AJ_G0028421.1 mouse_genomes_project 4 92696264 92741071 + Hook1 protein_coding processed_transcript MGP_AJ_T0066434.1 MGP_AJ_G0028421.1 mouse_genomes_project 4 92696270 92725132 + MGP_AJ_P0066434 Hook1 protein_coding protein_coding MGP_AJ_T0066435.1 MGP_AJ_G0028421.1 mouse_genomes_project 4 92703306 92747933 + Hook1 protein_coding processed_transcript MGP_AJ_T0066436.1 MGP_AJ_G0028421.1 mouse_genomes_project 4 92728039 92735116 + Hook1 protein_coding processed_transcript MGP_AJ_T0066437.1 MGP_AJ_G0028421.1 mouse_genomes_project 4 92729213 92735509 + Hook1 protein_coding processed_transcript MGP_AJ_T0066438.1 MGP_AJ_G0028421.1 mouse_genomes_project 4 92729928 92748075 + Hook1 protein_coding processed_transcript MGP_AJ_T0066439.1 MGP_AJ_G0028421.1 mouse_genomes_project 4 92738883 92745218 + Hook1 protein_coding processed_transcript MGP_AJ_T0066440.1 MGP_AJ_G0028421.1 mouse_genomes_project 4 92741774 92743268 + Hook1 protein_coding processed_transcript MGP_AJ_T0066441.1 MGP_AJ_G0028421.1 mouse_genomes_project 4 92745601 92747822 + Hook1 protein_coding processed_transcript MGP_AJ_T0066442.1 MGP_AJ_G0028421.1 mouse_genomes_project 4 92746831 92750982 + Hook1 protein_coding processed_transcript MGP_AJ_T0068520.1 MGP_AJ_G0028873.1 mouse_genomes_project 4 130717739 130776138 - MGP_AJ_P0068520 Cep85 protein_coding protein_coding MGP_AJ_T0068521.1 MGP_AJ_G0028873.1 mouse_genomes_project 4 130717747 130776007 - MGP_AJ_P0068521 Cep85 protein_coding protein_coding MGP_AJ_T0068522.1 MGP_AJ_G0028873.1 mouse_genomes_project 4 130718976 130721472 - Cep85 protein_coding processed_transcript MGP_AJ_T0068523.1 MGP_AJ_G0028873.1 mouse_genomes_project 4 130721061 130728095 - Cep85 protein_coding retained_intron MGP_AJ_T0068524.1 MGP_AJ_G0028873.1 mouse_genomes_project 4 130746399 130748613 - Cep85 protein_coding retained_intron MGP_AJ_T0068525.1 MGP_AJ_G0028873.1 mouse_genomes_project 4 130750037 130751060 - Cep85 protein_coding processed_transcript MGP_AJ_T0068526.1 MGP_AJ_G0028873.1 mouse_genomes_project 4 130750233 130776111 - MGP_AJ_P0068526 Cep85 protein_coding nonsense_mediated_decay MGP_AJ_T0068527.1 MGP_AJ_G0028873.1 mouse_genomes_project 4 130761524 130776077 - Cep85 protein_coding retained_intron MGP_AJ_T0066591.1 MGP_AJ_G0028461.1 mouse_genomes_project 4 98741898 98744806 - MGP_AJ_P0066591 Gm12790 protein_coding protein_coding MGP_AJ_T0067250.1 MGP_AJ_G0028591.1 mouse_genomes_project 4 113037429 113052459 - MGP_AJ_P0067250 Akr1a1 protein_coding protein_coding MGP_AJ_T0067251.1 MGP_AJ_G0028591.1 mouse_genomes_project 4 113037430 113052175 - Akr1a1 protein_coding processed_transcript MGP_AJ_T0067252.1 MGP_AJ_G0028591.1 mouse_genomes_project 4 113037430 113038941 - Akr1a1 protein_coding processed_transcript MGP_AJ_T0067253.1 MGP_AJ_G0028591.1 mouse_genomes_project 4 113040024 113050252 - MGP_AJ_P0067253 Akr1a1 protein_coding protein_coding MGP_AJ_T0099935.1 MGP_AJ_G0037901.1 mouse_genomes_project 4 95116395 95116485 - Gm24960 snRNA snRNA MGP_AJ_T0007847.1 MGP_AJ_G0006413.1 mouse_genomes_project 4 44672438 44674244 + Gm12434 lincRNA lincRNA MGP_AJ_T0001405.1 MGP_AJ_G0001328.1 mouse_genomes_project 4 2905910 2906185 + TEC TEC MGP_AJ_T0018072.1 MGP_AJ_G0015541.1 mouse_genomes_project 4 103038841 103092577 + Gm12724 processed_transcript processed_transcript MGP_AJ_T0001428.1 MGP_AJ_G0001350.1 mouse_genomes_project 4 138004708 138005983 - TEC TEC MGP_AJ_T0001429.1 MGP_AJ_G0001350.1 mouse_genomes_project 4 138004714 138005983 - TEC TEC MGP_AJ_T0007820.1 MGP_AJ_G0006387.1 mouse_genomes_project 4 18975348 18977910 + Gm30731 lincRNA lincRNA MGP_AJ_T0007999.1 MGP_AJ_G0006525.1 mouse_genomes_project 4 130399638 130400834 + Gm12974 lincRNA lincRNA MGP_AJ_T0069639.1 MGP_AJ_G0029147.1 mouse_genomes_project 4 149951912 150010361 - MGP_AJ_P0069639 Kcnab2 protein_coding protein_coding MGP_AJ_T0069640.1 MGP_AJ_G0029147.1 mouse_genomes_project 4 149951914 150039389 - MGP_AJ_P0069640 Kcnab2 protein_coding protein_coding MGP_AJ_T0069641.1 MGP_AJ_G0029147.1 mouse_genomes_project 4 149951915 150039043 - MGP_AJ_P0069641 Kcnab2 protein_coding protein_coding MGP_AJ_T0069642.1 MGP_AJ_G0029147.1 mouse_genomes_project 4 149953891 150038951 - MGP_AJ_P0069642 Kcnab2 protein_coding protein_coding MGP_AJ_T0069643.1 MGP_AJ_G0029147.1 mouse_genomes_project 4 149953952 150010361 - MGP_AJ_P0069643 Kcnab2 protein_coding protein_coding MGP_AJ_T0069644.1 MGP_AJ_G0029147.1 mouse_genomes_project 4 149956158 149984107 - Kcnab2 protein_coding processed_transcript MGP_AJ_T0069645.1 MGP_AJ_G0029147.1 mouse_genomes_project 4 149962322 149992011 - Kcnab2 protein_coding processed_transcript MGP_AJ_T0069646.1 MGP_AJ_G0029147.1 mouse_genomes_project 4 149963242 150016662 - MGP_AJ_P0069646 Kcnab2 protein_coding protein_coding MGP_AJ_T0069647.1 MGP_AJ_G0029147.1 mouse_genomes_project 4 149964342 150010262 - Kcnab2 protein_coding processed_transcript MGP_AJ_T0069648.1 MGP_AJ_G0029147.1 mouse_genomes_project 4 149973205 150039062 - Kcnab2 protein_coding retained_intron MGP_AJ_T0069649.1 MGP_AJ_G0029147.1 mouse_genomes_project 4 149973359 149987208 - Kcnab2 protein_coding processed_transcript MGP_AJ_T0069650.1 MGP_AJ_G0029147.1 mouse_genomes_project 4 149974189 149979770 - Kcnab2 protein_coding processed_transcript MGP_AJ_T0069651.1 MGP_AJ_G0029147.1 mouse_genomes_project 4 149987777 150010262 - Kcnab2 protein_coding processed_transcript MGP_AJ_T0069652.1 MGP_AJ_G0029147.1 mouse_genomes_project 4 149996149 150039013 - MGP_AJ_P0069652 Kcnab2 protein_coding protein_coding MGP_AJ_T0007864.1 MGP_AJ_G0006426.1 mouse_genomes_project 4 53951791 53959054 + Gm12536 lincRNA lincRNA MGP_AJ_T0004563.1 MGP_AJ_G0003960.1 mouse_genomes_project 4 134835540 134836465 - 1700095J12Rik antisense antisense MGP_AJ_T0068359.1 MGP_AJ_G0028838.1 mouse_genomes_project 4 129333815 129342107 + Rpa2 protein_coding processed_transcript MGP_AJ_T0068360.1 MGP_AJ_G0028838.1 mouse_genomes_project 4 129333818 129344141 + MGP_AJ_P0068360 Rpa2 protein_coding protein_coding MGP_AJ_T0068361.1 MGP_AJ_G0028838.1 mouse_genomes_project 4 129333859 129339632 + Rpa2 protein_coding retained_intron MGP_AJ_T0068362.1 MGP_AJ_G0028838.1 mouse_genomes_project 4 129334118 129337505 + Rpa2 protein_coding retained_intron MGP_AJ_T0068363.1 MGP_AJ_G0028838.1 mouse_genomes_project 4 129335901 129337693 + Rpa2 protein_coding retained_intron MGP_AJ_T0068364.1 MGP_AJ_G0028838.1 mouse_genomes_project 4 129340524 129342551 + MGP_AJ_P0068364 Rpa2 protein_coding protein_coding MGP_AJ_T0064730.1 MGP_AJ_G0028008.1 mouse_genomes_project 4 7797225 7837422 - MGP_AJ_P0064730 Dpy19l4 protein_coding protein_coding MGP_AJ_T0064731.1 MGP_AJ_G0028008.1 mouse_genomes_project 4 7797225 7857166 - MGP_AJ_P0064731 Dpy19l4 protein_coding protein_coding MGP_AJ_T0064732.1 MGP_AJ_G0028008.1 mouse_genomes_project 4 7812354 7857166 - MGP_AJ_P0064732 Dpy19l4 protein_coding protein_coding MGP_AJ_T0064733.1 MGP_AJ_G0028008.1 mouse_genomes_project 4 7815457 7857104 - MGP_AJ_P0064733 Dpy19l4 protein_coding nonsense_mediated_decay MGP_AJ_T0064734.1 MGP_AJ_G0028008.1 mouse_genomes_project 4 7837483 7857076 - Dpy19l4 protein_coding processed_transcript MGP_AJ_T0064735.1 MGP_AJ_G0028008.1 mouse_genomes_project 4 7852308 7857129 - Dpy19l4 protein_coding processed_transcript MGP_AJ_T0001408.1 MGP_AJ_G0001331.1 mouse_genomes_project 4 12937951 12938557 + TEC TEC MGP_AJ_T0014566.1 MGP_AJ_G0012661.1 mouse_genomes_project 4 52137540 52137968 + processed_pseudogene processed_pseudogene MGP_AJ_T0067492.1 MGP_AJ_G0028643.1 mouse_genomes_project 4 115234360 115259304 - MGP_AJ_P0067492 protein_coding protein_coding MGP_AJ_T0099900.1 MGP_AJ_G0037866.1 mouse_genomes_project 4 22378407 22378513 + Gm24965 snRNA snRNA MGP_AJ_T0014655.1 MGP_AJ_G0012750.1 mouse_genomes_project 4 89888525 89891452 + processed_pseudogene processed_pseudogene MGP_AJ_T0014407.1 MGP_AJ_G0012502.1 mouse_genomes_project 4 7460429 7460915 + processed_pseudogene processed_pseudogene MGP_AJ_T0066530.1 MGP_AJ_G0028443.1 mouse_genomes_project 4 96068227 96069652 + MGP_AJ_P0066530 Gm12689 protein_coding protein_coding MGP_AJ_T0069192.1 MGP_AJ_G0029050.1 mouse_genomes_project 4 141193040 141198062 + MGP_AJ_P0069192 protein_coding protein_coding MGP_AJ_T0069561.1 MGP_AJ_G0029134.1 mouse_genomes_project 4 149561988 149572369 - MGP_AJ_P0069561 Tas1r1 protein_coding unknown_likely_coding MGP_AJ_T0069562.1 MGP_AJ_G0029134.1 mouse_genomes_project 4 149561997 149573646 - MGP_AJ_P0069562 Tas1r1 protein_coding protein_coding MGP_AJ_T0102607.1 MGP_AJ_G0040349.1 mouse_genomes_project 4 113555969 113559357 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0007891.1 MGP_AJ_G0006450.1 mouse_genomes_project 4 84120557 84123466 + Gm12600 lincRNA lincRNA MGP_AJ_T0065323.1 MGP_AJ_G0028156.1 mouse_genomes_project 4 39673481 39686628 - MGP_AJ_P0065323 Fam214b protein_coding protein_coding MGP_AJ_T0065324.1 MGP_AJ_G0028156.1 mouse_genomes_project 4 39673481 39687023 - MGP_AJ_P0065324 Fam214b protein_coding protein_coding MGP_AJ_T0065325.1 MGP_AJ_G0028156.1 mouse_genomes_project 4 39673481 39681347 - MGP_AJ_P0065325 Fam214b protein_coding protein_coding MGP_AJ_T0065326.1 MGP_AJ_G0028156.1 mouse_genomes_project 4 39673481 39686600 - MGP_AJ_P0065326 Fam214b protein_coding protein_coding MGP_AJ_T0065327.1 MGP_AJ_G0028156.1 mouse_genomes_project 4 39673481 39681350 - MGP_AJ_P0065327 Fam214b protein_coding protein_coding MGP_AJ_T0065328.1 MGP_AJ_G0028156.1 mouse_genomes_project 4 39673481 39687023 - MGP_AJ_P0065328 Fam214b protein_coding nonsense_mediated_decay MGP_AJ_T0065329.1 MGP_AJ_G0028156.1 mouse_genomes_project 4 39677392 39681354 - MGP_AJ_P0065329 Fam214b protein_coding protein_coding MGP_AJ_T0065330.1 MGP_AJ_G0028156.1 mouse_genomes_project 4 39677673 39678375 - MGP_AJ_P0065330 Fam214b protein_coding protein_coding MGP_AJ_T0065331.1 MGP_AJ_G0028156.1 mouse_genomes_project 4 39677776 39680390 - MGP_AJ_P0065331 Fam214b protein_coding protein_coding MGP_AJ_T0065332.1 MGP_AJ_G0028156.1 mouse_genomes_project 4 39678050 39686562 - Fam214b protein_coding processed_transcript MGP_AJ_T0067734.1 MGP_AJ_G0028706.1 mouse_genomes_project 4 120484776 120504324 + MGP_AJ_P0067734 Rragc protein_coding protein_coding MGP_AJ_T0067735.1 MGP_AJ_G0028706.1 mouse_genomes_project 4 120484804 120504320 + MGP_AJ_P0067735 Rragc protein_coding nonsense_mediated_decay MGP_AJ_T0067737.1 MGP_AJ_G0028706.1 mouse_genomes_project 4 120486415 120488320 + Rragc protein_coding processed_transcript MGP_AJ_T0067738.1 MGP_AJ_G0028706.1 mouse_genomes_project 4 120488235 120497298 + Rragc protein_coding retained_intron MGP_AJ_T0067739.1 MGP_AJ_G0028706.1 mouse_genomes_project 4 120488610 120502873 + Rragc protein_coding processed_transcript MGP_AJ_T0067865.1 MGP_AJ_G0028739.1 mouse_genomes_project 4 122968441 122989251 - MGP_AJ_P0067865 Ago3 protein_coding protein_coding MGP_AJ_T0067866.1 MGP_AJ_G0028739.1 mouse_genomes_project 4 122969469 123072968 - MGP_AJ_P0067866 Ago3 protein_coding protein_coding MGP_AJ_T0067867.1 MGP_AJ_G0028739.1 mouse_genomes_project 4 122982910 122989833 - MGP_AJ_P0067867 Ago3 protein_coding protein_coding MGP_AJ_T0067868.1 MGP_AJ_G0028739.1 mouse_genomes_project 4 123014230 123046715 - Ago3 protein_coding processed_transcript MGP_AJ_T0067869.1 MGP_AJ_G0028739.1 mouse_genomes_project 4 123014470 123072698 - MGP_AJ_P0067869 Ago3 protein_coding unknown_likely_coding MGP_AJ_T0067870.1 MGP_AJ_G0028739.1 mouse_genomes_project 4 123040372 123046756 - Ago3 protein_coding processed_transcript MGP_AJ_T0067871.1 MGP_AJ_G0028739.1 mouse_genomes_project 4 123050116 123072953 - Ago3 protein_coding processed_transcript MGP_AJ_T0067067.1 MGP_AJ_G0028546.1 mouse_genomes_project 4 108763650 108782226 + MGP_AJ_P0067067 Skint1 protein_coding protein_coding MGP_AJ_T0067068.1 MGP_AJ_G0028546.1 mouse_genomes_project 4 108763650 108786090 + MGP_AJ_P0067068 Skint1 protein_coding protein_coding MGP_AJ_T0067069.1 MGP_AJ_G0028546.1 mouse_genomes_project 4 108763650 108776571 + MGP_AJ_P0067069 Skint1 protein_coding protein_coding MGP_AJ_T0067070.1 MGP_AJ_G0028546.1 mouse_genomes_project 4 108763650 108782226 + MGP_AJ_P0067070 Skint1 protein_coding protein_coding MGP_AJ_T0067071.1 MGP_AJ_G0028546.1 mouse_genomes_project 4 108763663 108769782 + Skint1 protein_coding retained_intron MGP_AJ_T0014438.1 MGP_AJ_G0012533.1 mouse_genomes_project 4 15043329 15045439 + processed_pseudogene processed_pseudogene MGP_AJ_T0067774.1 MGP_AJ_G0028718.1 mouse_genomes_project 4 121519388 121536502 - MGP_AJ_P0067774 Cdca8 protein_coding protein_coding MGP_AJ_T0067775.1 MGP_AJ_G0028718.1 mouse_genomes_project 4 121520034 121536458 - MGP_AJ_P0067775 Cdca8 protein_coding protein_coding MGP_AJ_T0067776.1 MGP_AJ_G0028718.1 mouse_genomes_project 4 121520479 121535992 - Cdca8 protein_coding processed_transcript MGP_AJ_T0067777.1 MGP_AJ_G0028718.1 mouse_genomes_project 4 121524547 121536366 - Cdca8 protein_coding processed_transcript MGP_AJ_T0067778.1 MGP_AJ_G0028718.1 mouse_genomes_project 4 121524727 121536427 - Cdca8 protein_coding retained_intron MGP_AJ_T0067779.1 MGP_AJ_G0028718.1 mouse_genomes_project 4 121527617 121538896 - MGP_AJ_P0067779 Cdca8 protein_coding protein_coding MGP_AJ_T0068183.1 MGP_AJ_G0028803.1 mouse_genomes_project 4 126819772 126828770 - MGP_AJ_P0068183 Hcrtr1 protein_coding protein_coding MGP_AJ_T0068184.1 MGP_AJ_G0028803.1 mouse_genomes_project 4 126819772 126828159 - MGP_AJ_P0068184 Hcrtr1 protein_coding protein_coding MGP_AJ_T0068185.1 MGP_AJ_G0028803.1 mouse_genomes_project 4 126819772 126828967 - MGP_AJ_P0068185 Hcrtr1 protein_coding protein_coding MGP_AJ_T0068186.1 MGP_AJ_G0028803.1 mouse_genomes_project 4 126820396 126827184 - MGP_AJ_P0068186 Hcrtr1 protein_coding protein_coding MGP_AJ_T0014401.1 MGP_AJ_G0012496.1 mouse_genomes_project 4 5419493 5419891 + processed_pseudogene processed_pseudogene MGP_AJ_T0101236.1 MGP_AJ_G0039202.1 mouse_genomes_project 4 91230929 91231030 + Gm22804 snoRNA snoRNA MGP_AJ_T0010584.1 MGP_AJ_G0008706.1 mouse_genomes_project 4 40274431 40274564 + Gm25262 miRNA miRNA MGP_AJ_T0014464.1 MGP_AJ_G0012559.1 mouse_genomes_project 4 22904779 22905507 + processed_pseudogene processed_pseudogene MGP_AJ_T0014587.1 MGP_AJ_G0012682.1 mouse_genomes_project 4 66104436 66107929 - processed_pseudogene processed_pseudogene MGP_AJ_T0007963.1 MGP_AJ_G0006502.1 mouse_genomes_project 4 124205587 124232952 + A630031M04Rik lincRNA lincRNA MGP_AJ_T0068239.1 MGP_AJ_G0028815.1 mouse_genomes_project 4 127480187 127490613 + MGP_AJ_P0068239 Matn1 protein_coding protein_coding MGP_AJ_T0008005.1 MGP_AJ_G0006528.1 mouse_genomes_project 4 132979237 132980823 - Gm27022 lincRNA lincRNA MGP_AJ_T0067730.1 MGP_AJ_G0028705.1 mouse_genomes_project 4 120471646 120477797 + MGP_AJ_P0067730 Mycbp protein_coding protein_coding MGP_AJ_T0067731.1 MGP_AJ_G0028705.1 mouse_genomes_project 4 120471736 120477858 + MGP_AJ_P0067731 Mycbp protein_coding protein_coding MGP_AJ_T0067732.1 MGP_AJ_G0028705.1 mouse_genomes_project 4 120471773 120476446 + Mycbp protein_coding processed_transcript MGP_AJ_T0067733.1 MGP_AJ_G0028705.1 mouse_genomes_project 4 120471868 120477963 + Mycbp protein_coding processed_transcript MGP_AJ_T0068453.1 MGP_AJ_G0028863.1 mouse_genomes_project 4 130262571 130336728 - MGP_AJ_P0068453 Arid1a protein_coding protein_coding MGP_AJ_T0068454.1 MGP_AJ_G0028863.1 mouse_genomes_project 4 130262571 130336728 - MGP_AJ_P0068454 Arid1a protein_coding protein_coding MGP_AJ_T0068455.1 MGP_AJ_G0028863.1 mouse_genomes_project 4 130263491 130339780 - MGP_AJ_P0068455 Arid1a protein_coding protein_coding MGP_AJ_T0068456.1 MGP_AJ_G0028863.1 mouse_genomes_project 4 130273027 130306262 - Arid1a protein_coding retained_intron MGP_AJ_T0068457.1 MGP_AJ_G0028863.1 mouse_genomes_project 4 130302611 130304025 - Arid1a protein_coding retained_intron MGP_AJ_T0068458.1 MGP_AJ_G0028863.1 mouse_genomes_project 4 130304027 130307091 - MGP_AJ_P0068458 Arid1a protein_coding protein_coding MGP_AJ_T0099911.1 MGP_AJ_G0037877.1 mouse_genomes_project 4 37759465 37759573 - Gm26049 snRNA snRNA MGP_AJ_T0014590.1 MGP_AJ_G0012685.1 mouse_genomes_project 4 66821675 66822725 + processed_pseudogene processed_pseudogene MGP_AJ_T0069740.1 MGP_AJ_G0029164.1 mouse_genomes_project 4 152450205 152468978 + MGP_AJ_P0069740 Ttc34 protein_coding unknown_likely_coding MGP_AJ_T0069741.1 MGP_AJ_G0029164.1 mouse_genomes_project 4 152456082 152470665 + MGP_AJ_P0069741 Ttc34 protein_coding protein_coding MGP_AJ_T0069742.1 MGP_AJ_G0029164.1 mouse_genomes_project 4 152460550 152461629 + Ttc34 protein_coding processed_transcript MGP_AJ_T0068618.1 MGP_AJ_G0028898.1 mouse_genomes_project 4 131731005 131789530 + MGP_AJ_P0068618 Runx3 protein_coding protein_coding MGP_AJ_T0068619.1 MGP_AJ_G0028898.1 mouse_genomes_project 4 131764022 131787776 + MGP_AJ_P0068619 Runx3 protein_coding protein_coding MGP_AJ_T0068620.1 MGP_AJ_G0028898.1 mouse_genomes_project 4 131764464 131767110 + Runx3 protein_coding retained_intron MGP_AJ_T0068621.1 MGP_AJ_G0028898.1 mouse_genomes_project 4 131764686 131766872 + Runx3 protein_coding processed_transcript MGP_AJ_T0068622.1 MGP_AJ_G0028898.1 mouse_genomes_project 4 131765031 131766927 + Runx3 protein_coding processed_transcript MGP_AJ_T0068623.1 MGP_AJ_G0028898.1 mouse_genomes_project 4 131765936 131766843 + Runx3 protein_coding processed_transcript MGP_AJ_T0099969.1 MGP_AJ_G0037935.1 mouse_genomes_project 4 132197054 132197155 + Gm23106 snRNA snRNA MGP_AJ_T0004517.1 MGP_AJ_G0003923.1 mouse_genomes_project 4 113853332 113862913 + Gm12828 antisense antisense MGP_AJ_T0066351.1 MGP_AJ_G0028397.1 mouse_genomes_project 4 85626207 85626829 + MGP_AJ_P0066351 Ifna5 protein_coding protein_coding MGP_AJ_T0102594.1 MGP_AJ_G0040336.1 mouse_genomes_project 4 92869295 92869501 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0010629.1 MGP_AJ_G0008751.1 mouse_genomes_project 4 131067716 131067807 + Gm23634 miRNA miRNA MGP_AJ_T0007846.1 MGP_AJ_G0006412.1 mouse_genomes_project 4 43666868 43669351 - Gm568 lincRNA lincRNA MGP_AJ_T0068132.1 MGP_AJ_G0028795.1 mouse_genomes_project 4 126320869 126352447 - MGP_AJ_P0068132 Kpna6 protein_coding protein_coding MGP_AJ_T0068133.1 MGP_AJ_G0028795.1 mouse_genomes_project 4 126330561 126331842 - Kpna6 protein_coding retained_intron MGP_AJ_T0068134.1 MGP_AJ_G0028795.1 mouse_genomes_project 4 126331209 126333651 - Kpna6 protein_coding retained_intron MGP_AJ_T0068135.1 MGP_AJ_G0028795.1 mouse_genomes_project 4 126334371 126352210 - MGP_AJ_P0068135 Kpna6 protein_coding protein_coding MGP_AJ_T0068136.1 MGP_AJ_G0028795.1 mouse_genomes_project 4 126337906 126352449 - Kpna6 protein_coding retained_intron MGP_AJ_T0068810.1 MGP_AJ_G0028945.1 mouse_genomes_project 4 134350098 134401289 + Rap1gap protein_coding processed_transcript MGP_AJ_T0068811.1 MGP_AJ_G0028945.1 mouse_genomes_project 4 134350126 134396605 + Rap1gap protein_coding retained_intron MGP_AJ_T0068812.1 MGP_AJ_G0028945.1 mouse_genomes_project 4 134365766 134414636 + MGP_AJ_P0068812 Rap1gap protein_coding protein_coding MGP_AJ_T0068813.1 MGP_AJ_G0028945.1 mouse_genomes_project 4 134365766 134402684 + MGP_AJ_P0068813 Rap1gap protein_coding protein_coding MGP_AJ_T0068814.1 MGP_AJ_G0028945.1 mouse_genomes_project 4 134365766 134400509 + MGP_AJ_P0068814 Rap1gap protein_coding protein_coding MGP_AJ_T0068815.1 MGP_AJ_G0028945.1 mouse_genomes_project 4 134366680 134414635 + MGP_AJ_P0068815 Rap1gap protein_coding protein_coding MGP_AJ_T0068816.1 MGP_AJ_G0028945.1 mouse_genomes_project 4 134372425 134400540 + Rap1gap protein_coding processed_transcript MGP_AJ_T0068817.1 MGP_AJ_G0028945.1 mouse_genomes_project 4 134392383 134414636 + MGP_AJ_P0068817 Rap1gap protein_coding protein_coding MGP_AJ_T0068818.1 MGP_AJ_G0028945.1 mouse_genomes_project 4 134403599 134413133 + MGP_AJ_P0068818 Rap1gap protein_coding protein_coding MGP_AJ_T0068819.1 MGP_AJ_G0028945.1 mouse_genomes_project 4 134408721 134414636 + Rap1gap protein_coding retained_intron MGP_AJ_T0068820.1 MGP_AJ_G0028945.1 mouse_genomes_project 4 134410059 134411786 + Rap1gap protein_coding retained_intron MGP_AJ_T0068821.1 MGP_AJ_G0028945.1 mouse_genomes_project 4 134412490 134413711 + Rap1gap protein_coding retained_intron MGP_AJ_T0068822.1 MGP_AJ_G0028945.1 mouse_genomes_project 4 134412955 134413594 + Rap1gap protein_coding retained_intron MGP_AJ_T0068823.1 MGP_AJ_G0028945.1 mouse_genomes_project 4 134412985 134414477 + Rap1gap protein_coding retained_intron MGP_AJ_T0014596.1 MGP_AJ_G0012691.1 mouse_genomes_project 4 69678337 69678935 + processed_pseudogene processed_pseudogene MGP_AJ_T0067502.1 MGP_AJ_G0028648.1 mouse_genomes_project 4 115622995 115627307 - MGP_AJ_P0067502 Zfp691 protein_coding protein_coding MGP_AJ_T0067503.1 MGP_AJ_G0028648.1 mouse_genomes_project 4 115622995 115627646 - MGP_AJ_P0067503 Zfp691 protein_coding protein_coding MGP_AJ_T0067504.1 MGP_AJ_G0028648.1 mouse_genomes_project 4 115622998 115627307 - MGP_AJ_P0067504 Zfp691 protein_coding protein_coding MGP_AJ_T0067505.1 MGP_AJ_G0028648.1 mouse_genomes_project 4 115624465 115627307 - MGP_AJ_P0067505 Zfp691 protein_coding protein_coding MGP_AJ_T0010597.1 MGP_AJ_G0008719.1 mouse_genomes_project 4 84923062 84923148 + Mir491 miRNA miRNA MGP_AJ_T0068439.1 MGP_AJ_G0028858.1 mouse_genomes_project 4 130153384 130165347 + MGP_AJ_P0068439 Gpatch3 protein_coding protein_coding MGP_AJ_T0068440.1 MGP_AJ_G0028858.1 mouse_genomes_project 4 130158297 130164095 + Gpatch3 protein_coding processed_transcript MGP_AJ_T0067642.1 MGP_AJ_G0028679.1 mouse_genomes_project 4 117509748 117525668 + MGP_AJ_P0067642 Col9a2 protein_coding protein_coding MGP_AJ_T0067643.1 MGP_AJ_G0028679.1 mouse_genomes_project 4 117510111 117514702 + Col9a2 protein_coding retained_intron MGP_AJ_T0067644.1 MGP_AJ_G0028679.1 mouse_genomes_project 4 117523344 117525165 + Col9a2 protein_coding processed_transcript MGP_AJ_T0066297.1 MGP_AJ_G0028376.1 mouse_genomes_project 4 83663456 83665918 - protein_coding processed_transcript MGP_AJ_T0066298.1 MGP_AJ_G0028376.1 mouse_genomes_project 4 83664320 83665927 - protein_coding processed_transcript MGP_AJ_T0066299.1 MGP_AJ_G0028376.1 mouse_genomes_project 4 83664430 83665905 - protein_coding processed_transcript MGP_AJ_T0014414.1 MGP_AJ_G0012509.1 mouse_genomes_project 4 8699884 8700244 - processed_pseudogene processed_pseudogene MGP_AJ_T0066917.1 MGP_AJ_G0028521.1 mouse_genomes_project 4 105430108 105444295 + MGP_AJ_P0066917 Cc2d1b protein_coding protein_coding MGP_AJ_T0066918.1 MGP_AJ_G0028521.1 mouse_genomes_project 4 105433680 105436175 + MGP_AJ_P0066918 Cc2d1b protein_coding nonsense_mediated_decay MGP_AJ_T0066919.1 MGP_AJ_G0028521.1 mouse_genomes_project 4 105433731 105444295 + MGP_AJ_P0066919 Cc2d1b protein_coding protein_coding MGP_AJ_T0066920.1 MGP_AJ_G0028521.1 mouse_genomes_project 4 105435923 105436931 + Cc2d1b protein_coding retained_intron MGP_AJ_T0066921.1 MGP_AJ_G0028521.1 mouse_genomes_project 4 105436188 105437272 + Cc2d1b protein_coding retained_intron MGP_AJ_T0066922.1 MGP_AJ_G0028521.1 mouse_genomes_project 4 105436216 105444277 + Cc2d1b protein_coding retained_intron MGP_AJ_T0066923.1 MGP_AJ_G0028521.1 mouse_genomes_project 4 105439758 105440571 + Cc2d1b protein_coding retained_intron MGP_AJ_T0066924.1 MGP_AJ_G0028521.1 mouse_genomes_project 4 105439792 105440602 + Cc2d1b protein_coding processed_transcript MGP_AJ_T0066925.1 MGP_AJ_G0028521.1 mouse_genomes_project 4 105440618 105443435 + Cc2d1b protein_coding retained_intron MGP_AJ_T0065699.1 MGP_AJ_G0028226.1 mouse_genomes_project 4 44009012 44068441 + MGP_AJ_P0065699 Tgfbr1 protein_coding protein_coding MGP_AJ_T0065700.1 MGP_AJ_G0028226.1 mouse_genomes_project 4 44009017 44071238 + MGP_AJ_P0065700 Tgfbr1 protein_coding protein_coding MGP_AJ_T0065701.1 MGP_AJ_G0028226.1 mouse_genomes_project 4 44009303 44017019 + Tgfbr1 protein_coding processed_transcript MGP_AJ_T0065702.1 MGP_AJ_G0028226.1 mouse_genomes_project 4 44042514 44067343 + MGP_AJ_P0065702 Tgfbr1 protein_coding protein_coding MGP_AJ_T0067736.1 MGP_AJ_G0028707.1 mouse_genomes_project 4 120484834 120485353 - MGP_AJ_P0067736 4930535I16Rik protein_coding protein_coding MGP_AJ_T0014823.1 MGP_AJ_G0012918.1 mouse_genomes_project 4 141903013 141903795 + processed_pseudogene processed_pseudogene MGP_AJ_T0014756.1 MGP_AJ_G0012851.1 mouse_genomes_project 4 119821413 119822378 + processed_pseudogene processed_pseudogene MGP_AJ_T0065306.1 MGP_AJ_G0028154.1 mouse_genomes_project 4 39658722 39666156 - MGP_AJ_P0065306 Pigo protein_coding protein_coding MGP_AJ_T0065307.1 MGP_AJ_G0028154.1 mouse_genomes_project 4 39658722 39666895 - MGP_AJ_P0065307 Pigo protein_coding protein_coding MGP_AJ_T0065308.1 MGP_AJ_G0028154.1 mouse_genomes_project 4 39658722 39666832 - MGP_AJ_P0065308 Pigo protein_coding protein_coding MGP_AJ_T0065309.1 MGP_AJ_G0028154.1 mouse_genomes_project 4 39658994 39660794 - Pigo protein_coding processed_transcript MGP_AJ_T0065310.1 MGP_AJ_G0028154.1 mouse_genomes_project 4 39658996 39666858 - MGP_AJ_P0065310 Pigo protein_coding unknown_likely_coding MGP_AJ_T0065311.1 MGP_AJ_G0028154.1 mouse_genomes_project 4 39665778 39666543 - Pigo protein_coding processed_transcript MGP_AJ_T0069552.1 MGP_AJ_G0029132.1 mouse_genomes_project 4 149542810 149551764 + MGP_AJ_P0069552 Klhl21 protein_coding protein_coding MGP_AJ_T0067566.1 MGP_AJ_G0028660.1 mouse_genomes_project 4 115924554 115952377 - MGP_AJ_P0067566 Rimkla protein_coding protein_coding MGP_AJ_T0067567.1 MGP_AJ_G0028660.1 mouse_genomes_project 4 115933794 115952258 - Rimkla protein_coding processed_transcript MGP_AJ_T0067809.1 MGP_AJ_G0028728.1 mouse_genomes_project 4 122675953 122708950 + MGP_AJ_P0067809 Oscp1 protein_coding protein_coding MGP_AJ_T0067810.1 MGP_AJ_G0028728.1 mouse_genomes_project 4 122676069 122704700 + MGP_AJ_P0067810 Oscp1 protein_coding unknown_likely_coding MGP_AJ_T0067811.1 MGP_AJ_G0028728.1 mouse_genomes_project 4 122682113 122704703 + Oscp1 protein_coding processed_transcript MGP_AJ_T0067812.1 MGP_AJ_G0028728.1 mouse_genomes_project 4 122699264 122700763 + Oscp1 protein_coding processed_transcript MGP_AJ_T0067813.1 MGP_AJ_G0028728.1 mouse_genomes_project 4 122703940 122704921 + Oscp1 protein_coding processed_transcript MGP_AJ_T0101232.1 MGP_AJ_G0039198.1 mouse_genomes_project 4 85995907 85996047 - Gm26490 snoRNA snoRNA MGP_AJ_T0004473.1 MGP_AJ_G0003896.1 mouse_genomes_project 4 85527619 85533046 - Gm13274 antisense antisense MGP_AJ_T0004474.1 MGP_AJ_G0003896.1 mouse_genomes_project 4 85527712 85533045 - Gm13274 antisense antisense MGP_AJ_T0067293.1 MGP_AJ_G0028600.1 mouse_genomes_project 4 113393427 113397852 - MGP_AJ_P0067293 Urod protein_coding protein_coding MGP_AJ_T0067294.1 MGP_AJ_G0028600.1 mouse_genomes_project 4 113393655 113395104 - Urod protein_coding retained_intron MGP_AJ_T0067295.1 MGP_AJ_G0028600.1 mouse_genomes_project 4 113393723 113395325 - Urod protein_coding retained_intron MGP_AJ_T0067296.1 MGP_AJ_G0028600.1 mouse_genomes_project 4 113394514 113397803 - Urod protein_coding retained_intron MGP_AJ_T0067297.1 MGP_AJ_G0028600.1 mouse_genomes_project 4 113394899 113397796 - MGP_AJ_P0067297 Urod protein_coding protein_coding MGP_AJ_T0067298.1 MGP_AJ_G0028600.1 mouse_genomes_project 4 113395722 113397785 - Urod protein_coding retained_intron MGP_AJ_T0067299.1 MGP_AJ_G0028600.1 mouse_genomes_project 4 113396222 113397784 - Urod protein_coding retained_intron MGP_AJ_T0067300.1 MGP_AJ_G0028600.1 mouse_genomes_project 4 113396391 113397036 - Urod protein_coding processed_transcript MGP_AJ_T0067301.1 MGP_AJ_G0028600.1 mouse_genomes_project 4 113396546 113397779 - Urod protein_coding retained_intron MGP_AJ_T0067302.1 MGP_AJ_G0028600.1 mouse_genomes_project 4 113396718 113397819 - Urod protein_coding retained_intron MGP_AJ_T0066760.1 MGP_AJ_G0028495.1 mouse_genomes_project 4 103942541 103987297 - MGP_AJ_P0066760 Tceanc2 protein_coding protein_coding MGP_AJ_T0066761.1 MGP_AJ_G0028495.1 mouse_genomes_project 4 103947734 103987116 - MGP_AJ_P0066761 Tceanc2 protein_coding nonsense_mediated_decay MGP_AJ_T0066762.1 MGP_AJ_G0028495.1 mouse_genomes_project 4 103947789 103987033 - Tceanc2 protein_coding processed_transcript MGP_AJ_T0066763.1 MGP_AJ_G0028495.1 mouse_genomes_project 4 103947997 103987853 - MGP_AJ_P0066763 Tceanc2 protein_coding protein_coding MGP_AJ_T0066764.1 MGP_AJ_G0028495.1 mouse_genomes_project 4 103948041 103987032 - MGP_AJ_P0066764 Tceanc2 protein_coding protein_coding MGP_AJ_T0066765.1 MGP_AJ_G0028495.1 mouse_genomes_project 4 103948161 103987866 - MGP_AJ_P0066765 Tceanc2 protein_coding protein_coding MGP_AJ_T0066766.1 MGP_AJ_G0028495.1 mouse_genomes_project 4 103974384 103986601 - Tceanc2 protein_coding processed_transcript MGP_AJ_T0066767.1 MGP_AJ_G0028495.1 mouse_genomes_project 4 103981754 103986958 - Tceanc2 protein_coding processed_transcript MGP_AJ_T0066768.1 MGP_AJ_G0028495.1 mouse_genomes_project 4 103985365 103986418 - Tceanc2 protein_coding processed_transcript MGP_AJ_T0067582.1 MGP_AJ_G0028663.1 mouse_genomes_project 4 116099395 116102738 + MGP_AJ_P0067582 Guca2a protein_coding protein_coding MGP_AJ_T0065970.1 MGP_AJ_G0028304.1 mouse_genomes_project 4 58684759 58828383 - MGP_AJ_P0065970 Mup3 protein_coding unknown_likely_coding MGP_AJ_T0007896.1 MGP_AJ_G0006453.1 mouse_genomes_project 4 86982248 86986731 + Gm12629 lincRNA lincRNA MGP_AJ_T0014527.1 MGP_AJ_G0012622.1 mouse_genomes_project 4 42008457 42008751 - processed_pseudogene processed_pseudogene MGP_AJ_T0014483.1 MGP_AJ_G0012578.1 mouse_genomes_project 4 27794263 27794738 + processed_pseudogene processed_pseudogene MGP_AJ_T0007880.1 MGP_AJ_G0006440.1 mouse_genomes_project 4 68765989 68785986 + lincRNA lincRNA MGP_AJ_T0014787.1 MGP_AJ_G0012882.1 mouse_genomes_project 4 130464604 130464787 - processed_pseudogene processed_pseudogene MGP_AJ_T0069409.1 MGP_AJ_G0029105.1 mouse_genomes_project 4 146920429 146939080 - MGP_AJ_P0069409 Nmnat1 protein_coding protein_coding MGP_AJ_T0069410.1 MGP_AJ_G0029105.1 mouse_genomes_project 4 146921432 146939076 - MGP_AJ_P0069410 Nmnat1 protein_coding protein_coding MGP_AJ_T0069411.1 MGP_AJ_G0029105.1 mouse_genomes_project 4 146921472 146939050 - MGP_AJ_P0069411 Nmnat1 protein_coding protein_coding MGP_AJ_T0069412.1 MGP_AJ_G0029105.1 mouse_genomes_project 4 146928344 146939041 - MGP_AJ_P0069412 Nmnat1 protein_coding protein_coding MGP_AJ_T0069158.1 MGP_AJ_G0029027.1 mouse_genomes_project 4 140186051 140207841 + MGP_AJ_P0069158 Lrrc38 protein_coding protein_coding MGP_AJ_T0011582.1 MGP_AJ_G0009704.1 mouse_genomes_project 4 113320823 113321090 + Gm25435 misc_RNA misc_RNA MGP_AJ_T0018108.1 MGP_AJ_G0015559.1 mouse_genomes_project 4 149911753 149913344 - Gm13645 processed_transcript processed_transcript MGP_AJ_T0069424.1 MGP_AJ_G0029109.1 mouse_genomes_project 4 147111810 147162442 - MGP_AJ_P0069424 Pik3cd protein_coding protein_coding MGP_AJ_T0069425.1 MGP_AJ_G0029109.1 mouse_genomes_project 4 147111810 147162452 - MGP_AJ_P0069425 Pik3cd protein_coding protein_coding MGP_AJ_T0069426.1 MGP_AJ_G0029109.1 mouse_genomes_project 4 147111812 147165329 - MGP_AJ_P0069426 Pik3cd protein_coding protein_coding MGP_AJ_T0069427.1 MGP_AJ_G0029109.1 mouse_genomes_project 4 147111812 147137603 - MGP_AJ_P0069427 Pik3cd protein_coding protein_coding MGP_AJ_T0069428.1 MGP_AJ_G0029109.1 mouse_genomes_project 4 147111813 147139453 - MGP_AJ_P0069428 Pik3cd protein_coding protein_coding MGP_AJ_T0069429.1 MGP_AJ_G0029109.1 mouse_genomes_project 4 147112459 147162349 - MGP_AJ_P0069429 Pik3cd protein_coding protein_coding MGP_AJ_T0069430.1 MGP_AJ_G0029109.1 mouse_genomes_project 4 147113282 147125915 - MGP_AJ_P0069430 Pik3cd protein_coding protein_coding MGP_AJ_T0069431.1 MGP_AJ_G0029109.1 mouse_genomes_project 4 147122371 147138595 - MGP_AJ_P0069431 Pik3cd protein_coding protein_coding MGP_AJ_T0069432.1 MGP_AJ_G0029109.1 mouse_genomes_project 4 147122450 147139034 - MGP_AJ_P0069432 Pik3cd protein_coding protein_coding MGP_AJ_T0069433.1 MGP_AJ_G0029109.1 mouse_genomes_project 4 147122612 147162348 - MGP_AJ_P0069433 Pik3cd protein_coding protein_coding MGP_AJ_T0069434.1 MGP_AJ_G0029109.1 mouse_genomes_project 4 147122777 147162296 - MGP_AJ_P0069434 Pik3cd protein_coding protein_coding MGP_AJ_T0069435.1 MGP_AJ_G0029109.1 mouse_genomes_project 4 147125783 147166314 - MGP_AJ_P0069435 Pik3cd protein_coding protein_coding MGP_AJ_T0069436.1 MGP_AJ_G0029109.1 mouse_genomes_project 4 147136847 147139502 - Pik3cd protein_coding processed_transcript MGP_AJ_T0069437.1 MGP_AJ_G0029109.1 mouse_genomes_project 4 147137173 147165329 - Pik3cd protein_coding processed_transcript MGP_AJ_T0010603.1 MGP_AJ_G0008725.1 mouse_genomes_project 4 96431142 96431231 + Gm23366 miRNA miRNA MGP_AJ_T0069516.1 MGP_AJ_G0029126.1 mouse_genomes_project 4 148513996 148555267 - MGP_AJ_P0069516 Per3 protein_coding protein_coding MGP_AJ_T0069517.1 MGP_AJ_G0029126.1 mouse_genomes_project 4 148514130 148526617 - Per3 protein_coding processed_transcript MGP_AJ_T0069518.1 MGP_AJ_G0029126.1 mouse_genomes_project 4 148521908 148541969 - Per3 protein_coding retained_intron MGP_AJ_T0069519.1 MGP_AJ_G0029126.1 mouse_genomes_project 4 148521908 148555267 - MGP_AJ_P0069519 Per3 protein_coding nonsense_mediated_decay MGP_AJ_T0069520.1 MGP_AJ_G0029126.1 mouse_genomes_project 4 148534661 148555267 - Per3 protein_coding retained_intron MGP_AJ_T0014574.1 MGP_AJ_G0012669.1 mouse_genomes_project 4 56026320 56027040 - processed_pseudogene processed_pseudogene MGP_AJ_T0065048.1 MGP_AJ_G0028091.1 mouse_genomes_project 4 31232176 31311832 - MGP_AJ_P0065048 Zfp292 protein_coding protein_coding MGP_AJ_T0065049.1 MGP_AJ_G0028091.1 mouse_genomes_project 4 31232176 31311802 - MGP_AJ_P0065049 Zfp292 protein_coding protein_coding MGP_AJ_T0004521.1 MGP_AJ_G0003927.1 mouse_genomes_project 4 115401045 115401691 - Gm12863 antisense antisense MGP_AJ_T0004504.1 MGP_AJ_G0003913.1 mouse_genomes_project 4 105750130 105778559 - 8030443G20Rik antisense antisense MGP_AJ_T0014662.1 MGP_AJ_G0012757.1 mouse_genomes_project 4 91766384 91767026 - processed_pseudogene processed_pseudogene MGP_AJ_T0065927.1 MGP_AJ_G0028291.1 mouse_genomes_project 4 55646073 55671455 + MGP_AJ_P0065927 Dnajc25 protein_coding protein_coding MGP_AJ_T0065928.1 MGP_AJ_G0028291.1 mouse_genomes_project 4 55654580 55674939 + MGP_AJ_P0065928 Dnajc25 protein_coding nonsense_mediated_decay MGP_AJ_T0065929.1 MGP_AJ_G0028291.1 mouse_genomes_project 4 55654591 55674939 + MGP_AJ_P0065929 Dnajc25 protein_coding nonsense_mediated_decay MGP_AJ_T0065931.1 MGP_AJ_G0028291.1 mouse_genomes_project 4 55654629 55673926 + MGP_AJ_P0065931 Dnajc25 protein_coding protein_coding MGP_AJ_T0065355.1 MGP_AJ_G0028159.1 mouse_genomes_project 4 40020166 40064739 + MGP_AJ_P0065355 Rusc2 protein_coding protein_coding MGP_AJ_T0065356.1 MGP_AJ_G0028159.1 mouse_genomes_project 4 40020244 40052450 + MGP_AJ_P0065356 Rusc2 protein_coding protein_coding MGP_AJ_T0065357.1 MGP_AJ_G0028159.1 mouse_genomes_project 4 40020257 40053844 + Rusc2 protein_coding processed_transcript MGP_AJ_T0065358.1 MGP_AJ_G0028159.1 mouse_genomes_project 4 40021630 40052494 + MGP_AJ_P0065358 Rusc2 protein_coding protein_coding MGP_AJ_T0065359.1 MGP_AJ_G0028159.1 mouse_genomes_project 4 40021691 40052409 + MGP_AJ_P0065359 Rusc2 protein_coding protein_coding MGP_AJ_T0065360.1 MGP_AJ_G0028159.1 mouse_genomes_project 4 40022463 40059570 + Rusc2 protein_coding processed_transcript MGP_AJ_T0065361.1 MGP_AJ_G0028159.1 mouse_genomes_project 4 40022516 40052547 + MGP_AJ_P0065361 Rusc2 protein_coding protein_coding MGP_AJ_T0065362.1 MGP_AJ_G0028159.1 mouse_genomes_project 4 40038824 40064724 + Rusc2 protein_coding retained_intron MGP_AJ_T0065363.1 MGP_AJ_G0028159.1 mouse_genomes_project 4 40038839 40052393 + MGP_AJ_P0065363 Rusc2 protein_coding protein_coding MGP_AJ_T0065364.1 MGP_AJ_G0028159.1 mouse_genomes_project 4 40044018 40064739 + MGP_AJ_P0065364 Rusc2 protein_coding protein_coding MGP_AJ_T0065365.1 MGP_AJ_G0028159.1 mouse_genomes_project 4 40044085 40060106 + Rusc2 protein_coding processed_transcript MGP_AJ_T0065366.1 MGP_AJ_G0028159.1 mouse_genomes_project 4 40044140 40052833 + MGP_AJ_P0065366 Rusc2 protein_coding protein_coding MGP_AJ_T0065367.1 MGP_AJ_G0028159.1 mouse_genomes_project 4 40044920 40059453 + MGP_AJ_P0065367 Rusc2 protein_coding protein_coding MGP_AJ_T0065368.1 MGP_AJ_G0028159.1 mouse_genomes_project 4 40052349 40064300 + MGP_AJ_P0065368 Rusc2 protein_coding nonsense_mediated_decay MGP_AJ_T0065369.1 MGP_AJ_G0028159.1 mouse_genomes_project 4 40052349 40064739 + MGP_AJ_P0065369 Rusc2 protein_coding protein_coding MGP_AJ_T0065370.1 MGP_AJ_G0028159.1 mouse_genomes_project 4 40054091 40064016 + Rusc2 protein_coding processed_transcript MGP_AJ_T0065371.1 MGP_AJ_G0028159.1 mouse_genomes_project 4 40060142 40062024 + Rusc2 protein_coding retained_intron MGP_AJ_T0065372.1 MGP_AJ_G0028159.1 mouse_genomes_project 4 40061241 40061662 + Rusc2 protein_coding retained_intron MGP_AJ_T0014728.1 MGP_AJ_G0012823.1 mouse_genomes_project 4 113418978 113419618 - processed_pseudogene processed_pseudogene MGP_AJ_T0067332.1 MGP_AJ_G0028607.1 mouse_genomes_project 4 113564012 113566559 - MGP_AJ_P0067332 Rps8 protein_coding protein_coding MGP_AJ_T0067333.1 MGP_AJ_G0028607.1 mouse_genomes_project 4 113564019 113564701 - Rps8 protein_coding retained_intron MGP_AJ_T0067334.1 MGP_AJ_G0028607.1 mouse_genomes_project 4 113564576 113565499 - Rps8 protein_coding retained_intron MGP_AJ_T0067335.1 MGP_AJ_G0028607.1 mouse_genomes_project 4 113564595 113566400 - Rps8 protein_coding retained_intron MGP_AJ_T0067336.1 MGP_AJ_G0028607.1 mouse_genomes_project 4 113564713 113566385 - Rps8 protein_coding retained_intron MGP_AJ_T0067337.1 MGP_AJ_G0028607.1 mouse_genomes_project 4 113564889 113566388 - Rps8 protein_coding retained_intron MGP_AJ_T0007832.1 MGP_AJ_G0006399.1 mouse_genomes_project 4 33659464 33739545 + Gm12374 lincRNA lincRNA MGP_AJ_T0069368.1 MGP_AJ_G0029098.1 mouse_genomes_project 4 146546357 146561658 + MGP_AJ_P0069368 Dffa protein_coding protein_coding MGP_AJ_T0069369.1 MGP_AJ_G0029098.1 mouse_genomes_project 4 146546357 146559781 + MGP_AJ_P0069369 Dffa protein_coding protein_coding MGP_AJ_T0069370.1 MGP_AJ_G0029098.1 mouse_genomes_project 4 146550191 146550657 + Dffa protein_coding processed_transcript MGP_AJ_T0018057.1 MGP_AJ_G0015529.1 mouse_genomes_project 4 74984748 74986984 + B230208B08Rik processed_transcript processed_transcript MGP_AJ_T0065262.1 MGP_AJ_G0028144.1 mouse_genomes_project 4 38253674 38290394 - MGP_AJ_P0065262 protein_coding protein_coding MGP_AJ_T0014713.1 MGP_AJ_G0012808.1 mouse_genomes_project 4 108092845 108093893 - processed_pseudogene processed_pseudogene MGP_AJ_T0011562.1 MGP_AJ_G0009684.1 mouse_genomes_project 4 40546799 40546876 + Gm27265 misc_RNA misc_RNA MGP_AJ_T0068311.1 MGP_AJ_G0028828.1 mouse_genomes_project 4 128888447 128902271 - MGP_AJ_P0068311 Rcc1 protein_coding protein_coding MGP_AJ_T0068312.1 MGP_AJ_G0028828.1 mouse_genomes_project 4 128888451 128902229 - MGP_AJ_P0068312 Rcc1 protein_coding protein_coding MGP_AJ_T0068313.1 MGP_AJ_G0028828.1 mouse_genomes_project 4 128888451 128908134 - MGP_AJ_P0068313 Rcc1 protein_coding protein_coding MGP_AJ_T0068314.1 MGP_AJ_G0028828.1 mouse_genomes_project 4 128894179 128896456 - Rcc1 protein_coding processed_transcript MGP_AJ_T0068315.1 MGP_AJ_G0028828.1 mouse_genomes_project 4 128894346 128910103 - MGP_AJ_P0068315 Rcc1 protein_coding protein_coding MGP_AJ_T0068316.1 MGP_AJ_G0028828.1 mouse_genomes_project 4 128895238 128902225 - Rcc1 protein_coding retained_intron MGP_AJ_T0068317.1 MGP_AJ_G0028828.1 mouse_genomes_project 4 128895484 128901881 - Rcc1 protein_coding retained_intron MGP_AJ_T0068318.1 MGP_AJ_G0028828.1 mouse_genomes_project 4 128896014 128902216 - Rcc1 protein_coding retained_intron MGP_AJ_T0067547.1 MGP_AJ_G0028657.1 mouse_genomes_project 4 115778421 115816822 - Ccdc30 protein_coding retained_intron MGP_AJ_T0067548.1 MGP_AJ_G0028657.1 mouse_genomes_project 4 115779371 115873148 - MGP_AJ_P0067548 Ccdc30 protein_coding protein_coding MGP_AJ_T0067549.1 MGP_AJ_G0028657.1 mouse_genomes_project 4 115795832 115809056 - Ccdc30 protein_coding retained_intron MGP_AJ_T0067550.1 MGP_AJ_G0028657.1 mouse_genomes_project 4 115808190 115872946 - MGP_AJ_P0067550 Ccdc30 protein_coding unknown_likely_coding MGP_AJ_T0067551.1 MGP_AJ_G0028657.1 mouse_genomes_project 4 115808197 115841398 - MGP_AJ_P0067551 Ccdc30 protein_coding protein_coding MGP_AJ_T0067552.1 MGP_AJ_G0028657.1 mouse_genomes_project 4 115808198 115816615 - Ccdc30 protein_coding processed_transcript MGP_AJ_T0067553.1 MGP_AJ_G0028657.1 mouse_genomes_project 4 115809145 115851454 - MGP_AJ_P0067553 Ccdc30 protein_coding protein_coding MGP_AJ_T0067554.1 MGP_AJ_G0028657.1 mouse_genomes_project 4 115816726 115834273 - Ccdc30 protein_coding processed_transcript MGP_AJ_T0067555.1 MGP_AJ_G0028657.1 mouse_genomes_project 4 115824650 115841472 - Ccdc30 protein_coding processed_transcript MGP_AJ_T0067556.1 MGP_AJ_G0028657.1 mouse_genomes_project 4 115824652 115836238 - Ccdc30 protein_coding retained_intron MGP_AJ_T0067557.1 MGP_AJ_G0028657.1 mouse_genomes_project 4 115824660 115841398 - MGP_AJ_P0067557 Ccdc30 protein_coding protein_coding MGP_AJ_T0067558.1 MGP_AJ_G0028657.1 mouse_genomes_project 4 115830460 115841384 - Ccdc30 protein_coding retained_intron MGP_AJ_T0067559.1 MGP_AJ_G0028657.1 mouse_genomes_project 4 115850671 115858493 - Ccdc30 protein_coding processed_transcript MGP_AJ_T0064885.1 MGP_AJ_G0028052.1 mouse_genomes_project 4 18342690 18379971 + MGP_AJ_P0064885 Coq3 protein_coding protein_coding MGP_AJ_T0064886.1 MGP_AJ_G0028052.1 mouse_genomes_project 4 18363108 18364842 + Coq3 protein_coding processed_transcript MGP_AJ_T0004566.1 MGP_AJ_G0003963.1 mouse_genomes_project 4 136863379 136864854 + Gm13027 antisense antisense MGP_AJ_T0066034.1 MGP_AJ_G0028321.1 mouse_genomes_project 4 59726871 59895304 + MGP_AJ_P0066034 Zfp618 protein_coding protein_coding MGP_AJ_T0066035.1 MGP_AJ_G0028321.1 mouse_genomes_project 4 59726871 59871380 + MGP_AJ_P0066035 Zfp618 protein_coding protein_coding MGP_AJ_T0066036.1 MGP_AJ_G0028321.1 mouse_genomes_project 4 59726872 59889622 + MGP_AJ_P0066036 Zfp618 protein_coding protein_coding MGP_AJ_T0066037.1 MGP_AJ_G0028321.1 mouse_genomes_project 4 59876033 59877062 + Zfp618 protein_coding processed_transcript MGP_AJ_T0064849.1 MGP_AJ_G0028047.1 mouse_genomes_project 4 18136389 18144869 - Prdm13 protein_coding processed_transcript MGP_AJ_T0064850.1 MGP_AJ_G0028047.1 mouse_genomes_project 4 18136390 18144869 - MGP_AJ_P0064850 Prdm13 protein_coding protein_coding MGP_AJ_T0064851.1 MGP_AJ_G0028047.1 mouse_genomes_project 4 18136390 18144689 - MGP_AJ_P0064851 Prdm13 protein_coding protein_coding MGP_AJ_T0064852.1 MGP_AJ_G0028047.1 mouse_genomes_project 4 18138574 18144689 - Prdm13 protein_coding processed_transcript MGP_AJ_T0064853.1 MGP_AJ_G0028047.1 mouse_genomes_project 4 18138656 18144687 - Prdm13 protein_coding processed_transcript MGP_AJ_T0064854.1 MGP_AJ_G0028047.1 mouse_genomes_project 4 18141202 18144751 - Prdm13 protein_coding retained_intron MGP_AJ_T0014437.1 MGP_AJ_G0012532.1 mouse_genomes_project 4 15042809 15043255 - processed_pseudogene processed_pseudogene MGP_AJ_T0018036.1 MGP_AJ_G0015515.1 mouse_genomes_project 4 29428411 29432593 - 4933421O10Rik processed_transcript processed_transcript MGP_AJ_T0099977.1 MGP_AJ_G0037943.1 mouse_genomes_project 4 145971036 145971140 + Gm24002 snRNA snRNA MGP_AJ_T0065986.1 MGP_AJ_G0028311.1 mouse_genomes_project 4 59142082 59168393 - MGP_AJ_P0065986 Cdc26 protein_coding nonsense_mediated_decay MGP_AJ_T0065988.1 MGP_AJ_G0028311.1 mouse_genomes_project 4 59153020 59168393 - MGP_AJ_P0065988 Cdc26 protein_coding protein_coding MGP_AJ_T0065989.1 MGP_AJ_G0028311.1 mouse_genomes_project 4 59153071 59168376 - MGP_AJ_P0065989 Cdc26 protein_coding protein_coding MGP_AJ_T0065990.1 MGP_AJ_G0028311.1 mouse_genomes_project 4 59163368 59167667 - Cdc26 protein_coding retained_intron MGP_AJ_T0069634.1 MGP_AJ_G0029146.1 mouse_genomes_project 4 149898076 149951365 + MGP_AJ_P0069634 Chd5 protein_coding protein_coding MGP_AJ_T0069635.1 MGP_AJ_G0029146.1 mouse_genomes_project 4 149898076 149951365 + MGP_AJ_P0069635 Chd5 protein_coding protein_coding MGP_AJ_T0069636.1 MGP_AJ_G0029146.1 mouse_genomes_project 4 149898312 149951352 + MGP_AJ_P0069636 Chd5 protein_coding protein_coding MGP_AJ_T0069637.1 MGP_AJ_G0029146.1 mouse_genomes_project 4 149901019 149913329 + Chd5 protein_coding processed_transcript MGP_AJ_T0069638.1 MGP_AJ_G0029146.1 mouse_genomes_project 4 149933185 149951352 + Chd5 protein_coding processed_transcript MGP_AJ_T0018022.1 MGP_AJ_G0015509.1 mouse_genomes_project 4 6234940 6286270 + 4930412C18Rik processed_transcript processed_transcript MGP_AJ_T0018023.1 MGP_AJ_G0015509.1 mouse_genomes_project 4 6234940 6287731 + 4930412C18Rik processed_transcript processed_transcript MGP_AJ_T0018024.1 MGP_AJ_G0015509.1 mouse_genomes_project 4 6235006 6241361 + 4930412C18Rik processed_transcript processed_transcript MGP_AJ_T0018025.1 MGP_AJ_G0015509.1 mouse_genomes_project 4 6235034 6245212 + 4930412C18Rik processed_transcript processed_transcript MGP_AJ_T0018026.1 MGP_AJ_G0015509.1 mouse_genomes_project 4 6235152 6284605 + 4930412C18Rik processed_transcript processed_transcript MGP_AJ_T0014648.1 MGP_AJ_G0012743.1 mouse_genomes_project 4 87345347 87345971 - processed_pseudogene processed_pseudogene MGP_AJ_T0014420.1 MGP_AJ_G0012515.1 mouse_genomes_project 4 11363705 11364436 - processed_pseudogene processed_pseudogene MGP_AJ_T0004434.1 MGP_AJ_G0003862.1 mouse_genomes_project 4 28964235 28976200 - Bach2os antisense antisense MGP_AJ_T0004435.1 MGP_AJ_G0003862.1 mouse_genomes_project 4 28967656 28976155 - Bach2os antisense antisense MGP_AJ_T0004436.1 MGP_AJ_G0003862.1 mouse_genomes_project 4 28970199 28976246 - Bach2os antisense antisense MGP_AJ_T0066629.1 MGP_AJ_G0028467.1 mouse_genomes_project 4 99834570 99871308 - Wdr78 protein_coding retained_intron MGP_AJ_T0066630.1 MGP_AJ_G0028467.1 mouse_genomes_project 4 99834570 99914053 - MGP_AJ_P0066630 Wdr78 protein_coding protein_coding MGP_AJ_T0066631.1 MGP_AJ_G0028467.1 mouse_genomes_project 4 99834574 99914309 - MGP_AJ_P0066631 Wdr78 protein_coding protein_coding MGP_AJ_T0066632.1 MGP_AJ_G0028467.1 mouse_genomes_project 4 99834574 99913978 - MGP_AJ_P0066632 Wdr78 protein_coding nonsense_mediated_decay MGP_AJ_T0066633.1 MGP_AJ_G0028467.1 mouse_genomes_project 4 99834606 99873927 - Wdr78 protein_coding retained_intron MGP_AJ_T0066634.1 MGP_AJ_G0028467.1 mouse_genomes_project 4 99835777 99838116 - Wdr78 protein_coding processed_transcript MGP_AJ_T0066635.1 MGP_AJ_G0028467.1 mouse_genomes_project 4 99835796 99871129 - MGP_AJ_P0066635 Wdr78 protein_coding protein_coding MGP_AJ_T0066636.1 MGP_AJ_G0028467.1 mouse_genomes_project 4 99881469 99886888 - MGP_AJ_P0066636 Wdr78 protein_coding protein_coding MGP_AJ_T0066358.1 MGP_AJ_G0028403.1 mouse_genomes_project 4 86090737 86098616 - MGP_AJ_P0066358 Cdkn2a protein_coding protein_coding MGP_AJ_T0066359.1 MGP_AJ_G0028403.1 mouse_genomes_project 4 86090807 86111617 - MGP_AJ_P0066359 Cdkn2a protein_coding protein_coding MGP_AJ_T0007841.1 MGP_AJ_G0006408.1 mouse_genomes_project 4 41605870 41610620 + Gm12678 lincRNA lincRNA MGP_AJ_T0098842.1 MGP_AJ_G0036826.1 mouse_genomes_project 4 83341706 83341837 - Scarna8 scaRNA scaRNA MGP_AJ_T0066685.1 MGP_AJ_G0028480.1 mouse_genomes_project 4 103120998 103245047 + MGP_AJ_P0066685 Usp24 protein_coding protein_coding MGP_AJ_T0066686.1 MGP_AJ_G0028480.1 mouse_genomes_project 4 103121005 103166178 + Usp24 protein_coding retained_intron MGP_AJ_T0066687.1 MGP_AJ_G0028480.1 mouse_genomes_project 4 103121019 103245052 + MGP_AJ_P0066687 Usp24 protein_coding protein_coding MGP_AJ_T0066688.1 MGP_AJ_G0028480.1 mouse_genomes_project 4 103232225 103234585 + Usp24 protein_coding processed_transcript MGP_AJ_T0010609.1 MGP_AJ_G0008731.1 mouse_genomes_project 4 114631351 114631411 - Mir7226 miRNA miRNA MGP_AJ_T0068079.1 MGP_AJ_G0028788.1 mouse_genomes_project 4 126254291 126254934 - Fam167b protein_coding processed_transcript MGP_AJ_T0068080.1 MGP_AJ_G0028788.1 mouse_genomes_project 4 126254291 126256026 - MGP_AJ_P0068080 Fam167b protein_coding protein_coding MGP_AJ_T0066347.1 MGP_AJ_G0028393.1 mouse_genomes_project 4 85508005 85509043 + MGP_AJ_P0066347 Gm26566 protein_coding protein_coding MGP_AJ_T0014390.1 MGP_AJ_G0012485.1 mouse_genomes_project 4 1541999 1542367 - processed_pseudogene processed_pseudogene MGP_AJ_T0065883.1 MGP_AJ_G0028280.1 mouse_genomes_project 4 54374089 54516301 + protein_coding processed_transcript MGP_AJ_T0065884.1 MGP_AJ_G0028280.1 mouse_genomes_project 4 54409124 54554984 + MGP_AJ_P0065884 protein_coding protein_coding MGP_AJ_T0065885.1 MGP_AJ_G0028280.1 mouse_genomes_project 4 54439644 54514581 + MGP_AJ_P0065885 protein_coding protein_coding MGP_AJ_T0065886.1 MGP_AJ_G0028280.1 mouse_genomes_project 4 54487685 54514428 + MGP_AJ_P0065886 protein_coding protein_coding MGP_AJ_T0001417.1 MGP_AJ_G0001340.1 mouse_genomes_project 4 103095894 103096930 - TEC TEC MGP_AJ_T0064972.1 MGP_AJ_G0028071.1 mouse_genomes_project 4 29196755 29197887 + MGP_AJ_P0064972 Lyrm2 protein_coding protein_coding MGP_AJ_T0064973.1 MGP_AJ_G0028071.1 mouse_genomes_project 4 29196781 29198063 + Lyrm2 protein_coding retained_intron MGP_AJ_T0064974.1 MGP_AJ_G0028071.1 mouse_genomes_project 4 29196784 29197479 + Lyrm2 protein_coding retained_intron MGP_AJ_T0014553.1 MGP_AJ_G0012648.1 mouse_genomes_project 4 49947099 49947546 + processed_pseudogene processed_pseudogene MGP_AJ_T0099965.1 MGP_AJ_G0037931.1 mouse_genomes_project 4 129109741 129109845 - Gm24762 snRNA snRNA MGP_AJ_T0068942.1 MGP_AJ_G0028975.1 mouse_genomes_project 4 136064714 136068335 - Mrto4 protein_coding processed_transcript MGP_AJ_T0068943.1 MGP_AJ_G0028975.1 mouse_genomes_project 4 136064714 136071308 - MGP_AJ_P0068943 Mrto4 protein_coding protein_coding MGP_AJ_T0068944.1 MGP_AJ_G0028975.1 mouse_genomes_project 4 136064724 136071030 - MGP_AJ_P0068944 Mrto4 protein_coding protein_coding MGP_AJ_T0068945.1 MGP_AJ_G0028975.1 mouse_genomes_project 4 136064735 136071028 - MGP_AJ_P0068945 Mrto4 protein_coding unknown_likely_coding MGP_AJ_T0068946.1 MGP_AJ_G0028975.1 mouse_genomes_project 4 136066893 136068353 - Mrto4 protein_coding retained_intron MGP_AJ_T0068947.1 MGP_AJ_G0028975.1 mouse_genomes_project 4 136067429 136071043 - MGP_AJ_P0068947 Mrto4 protein_coding protein_coding MGP_AJ_T0068948.1 MGP_AJ_G0028975.1 mouse_genomes_project 4 136067491 136071265 - Mrto4 protein_coding retained_intron MGP_AJ_T0068949.1 MGP_AJ_G0028975.1 mouse_genomes_project 4 136068606 136071042 - Mrto4 protein_coding retained_intron MGP_AJ_T0014786.1 MGP_AJ_G0012881.1 mouse_genomes_project 4 129851474 129851929 - processed_pseudogene processed_pseudogene MGP_AJ_T0067846.1 MGP_AJ_G0028734.1 mouse_genomes_project 4 122867110 122875064 - MGP_AJ_P0067846 Map7d1 protein_coding protein_coding MGP_AJ_T0067847.1 MGP_AJ_G0028734.1 mouse_genomes_project 4 122867110 122892306 - MGP_AJ_P0067847 Map7d1 protein_coding protein_coding MGP_AJ_T0067848.1 MGP_AJ_G0028734.1 mouse_genomes_project 4 122867110 122892312 - MGP_AJ_P0067848 Map7d1 protein_coding protein_coding MGP_AJ_T0067849.1 MGP_AJ_G0028734.1 mouse_genomes_project 4 122867110 122892372 - MGP_AJ_P0067849 Map7d1 protein_coding protein_coding MGP_AJ_T0067850.1 MGP_AJ_G0028734.1 mouse_genomes_project 4 122867906 122868492 - Map7d1 protein_coding retained_intron MGP_AJ_T0067851.1 MGP_AJ_G0028734.1 mouse_genomes_project 4 122868563 122869720 - Map7d1 protein_coding retained_intron MGP_AJ_T0007935.1 MGP_AJ_G0006483.1 mouse_genomes_project 4 111008791 111009435 - Gm28864 lincRNA lincRNA MGP_AJ_T0069200.1 MGP_AJ_G0029053.1 mouse_genomes_project 4 141426460 141445512 + MGP_AJ_P0069200 protein_coding protein_coding MGP_AJ_T0069202.1 MGP_AJ_G0029053.1 mouse_genomes_project 4 141426468 141445513 + MGP_AJ_P0069202 protein_coding protein_coding MGP_AJ_T0064715.1 MGP_AJ_G0028006.1 mouse_genomes_project 4 7726739 7729352 + Ccne2 protein_coding processed_transcript MGP_AJ_T0064716.1 MGP_AJ_G0028006.1 mouse_genomes_project 4 7726742 7740052 + MGP_AJ_P0064716 Ccne2 protein_coding protein_coding MGP_AJ_T0064717.1 MGP_AJ_G0028006.1 mouse_genomes_project 4 7727097 7730548 + Ccne2 protein_coding processed_transcript MGP_AJ_T0064718.1 MGP_AJ_G0028006.1 mouse_genomes_project 4 7727114 7740156 + MGP_AJ_P0064718 Ccne2 protein_coding protein_coding MGP_AJ_T0064719.1 MGP_AJ_G0028006.1 mouse_genomes_project 4 7727118 7740059 + MGP_AJ_P0064719 Ccne2 protein_coding protein_coding MGP_AJ_T0064720.1 MGP_AJ_G0028006.1 mouse_genomes_project 4 7727124 7730430 + Ccne2 protein_coding processed_transcript MGP_AJ_T0064721.1 MGP_AJ_G0028006.1 mouse_genomes_project 4 7727987 7728626 + Ccne2 protein_coding processed_transcript MGP_AJ_T0098801.1 MGP_AJ_G0036785.1 mouse_genomes_project 4 48451130 48451563 + Gm24943 ribozyme ribozyme MGP_AJ_T0065679.1 MGP_AJ_G0028221.1 mouse_genomes_project 4 43262605 43307680 - MGP_AJ_P0065679 Tbc1d2 protein_coding protein_coding MGP_AJ_T0065680.1 MGP_AJ_G0028221.1 mouse_genomes_project 4 43290709 43307680 - MGP_AJ_P0065680 Tbc1d2 protein_coding protein_coding MGP_AJ_T0068774.1 MGP_AJ_G0028933.1 mouse_genomes_project 4 133547900 133551171 - MGP_AJ_P0068774 C1qc protein_coding protein_coding MGP_AJ_T0068775.1 MGP_AJ_G0028933.1 mouse_genomes_project 4 133549757 133550982 - C1qc protein_coding processed_transcript MGP_AJ_T0065722.1 MGP_AJ_G0028232.1 mouse_genomes_project 4 44956258 44982243 + Invs protein_coding processed_transcript MGP_AJ_T0065723.1 MGP_AJ_G0028232.1 mouse_genomes_project 4 44956298 44957554 + Invs protein_coding processed_transcript MGP_AJ_T0065724.1 MGP_AJ_G0028232.1 mouse_genomes_project 4 44956300 45109705 + MGP_AJ_P0065724 Invs protein_coding protein_coding MGP_AJ_T0065725.1 MGP_AJ_G0028232.1 mouse_genomes_project 4 44956314 44963606 + Invs protein_coding processed_transcript MGP_AJ_T0065726.1 MGP_AJ_G0028232.1 mouse_genomes_project 4 44956324 45105102 + MGP_AJ_P0065726 Invs protein_coding nonsense_mediated_decay MGP_AJ_T0065728.1 MGP_AJ_G0028232.1 mouse_genomes_project 4 45058054 45073059 + Invs protein_coding processed_transcript MGP_AJ_T0067114.1 MGP_AJ_G0028564.1 mouse_genomes_project 4 111951426 111954364 + MGP_AJ_P0067114 Cyp4a31 protein_coding protein_coding MGP_AJ_T0067115.1 MGP_AJ_G0028564.1 mouse_genomes_project 4 111951426 111972947 + MGP_AJ_P0067115 Cyp4a31 protein_coding protein_coding MGP_AJ_T0067116.1 MGP_AJ_G0028564.1 mouse_genomes_project 4 111951461 111959599 + MGP_AJ_P0067116 Cyp4a31 protein_coding protein_coding MGP_AJ_T0067117.1 MGP_AJ_G0028564.1 mouse_genomes_project 4 111951475 111972945 + MGP_AJ_P0067117 Cyp4a31 protein_coding protein_coding MGP_AJ_T0066038.1 MGP_AJ_G0028322.1 mouse_genomes_project 4 59898851 59909720 - MGP_AJ_P0066038 Ambp protein_coding protein_coding MGP_AJ_T0066039.1 MGP_AJ_G0028322.1 mouse_genomes_project 4 59908280 59910346 - MGP_AJ_P0066039 Ambp protein_coding protein_coding MGP_AJ_T0007854.1 MGP_AJ_G0006417.1 mouse_genomes_project 4 50804162 50804660 - lincRNA lincRNA MGP_AJ_T0004488.1 MGP_AJ_G0003901.1 mouse_genomes_project 4 95880800 95882858 + Gm12705 antisense antisense MGP_AJ_T0099960.1 MGP_AJ_G0037926.1 mouse_genomes_project 4 123943923 123944026 - Gm22221 snRNA snRNA MGP_AJ_T0007816.1 MGP_AJ_G0006384.1 mouse_genomes_project 4 13019347 13066816 + Gm11861 lincRNA lincRNA MGP_AJ_T0014651.1 MGP_AJ_G0012746.1 mouse_genomes_project 4 88150130 88150691 + processed_pseudogene processed_pseudogene MGP_AJ_T0065072.1 MGP_AJ_G0028097.1 mouse_genomes_project 4 35908187 35909669 + MGP_AJ_P0065072 1700009N14Rik protein_coding protein_coding MGP_AJ_T0065930.1 MGP_AJ_G0028292.1 mouse_genomes_project 4 55654608 55690482 + MGP_AJ_P0065930 Gm20503 protein_coding protein_coding MGP_AJ_T0101207.1 MGP_AJ_G0039173.1 mouse_genomes_project 4 45572715 45572840 + Gm23746 snoRNA snoRNA MGP_AJ_T0066276.1 MGP_AJ_G0028371.1 mouse_genomes_project 4 83177527 83294437 - Saxo1 protein_coding processed_transcript MGP_AJ_T0066277.1 MGP_AJ_G0028371.1 mouse_genomes_project 4 83177527 83313611 - MGP_AJ_P0066277 Saxo1 protein_coding protein_coding MGP_AJ_T0066278.1 MGP_AJ_G0028371.1 mouse_genomes_project 4 83233997 83313303 - Saxo1 protein_coding processed_transcript MGP_AJ_T0066279.1 MGP_AJ_G0028371.1 mouse_genomes_project 4 83236585 83313636 - Saxo1 protein_coding processed_transcript MGP_AJ_T0014668.1 MGP_AJ_G0012763.1 mouse_genomes_project 4 94993775 94994268 - processed_pseudogene processed_pseudogene MGP_AJ_T0018107.1 MGP_AJ_G0015558.1 mouse_genomes_project 4 137559480 137566015 + Gm13032 processed_transcript processed_transcript MGP_AJ_T0001419.1 MGP_AJ_G0001342.1 mouse_genomes_project 4 115749725 115750159 - TEC TEC MGP_AJ_T0064802.1 MGP_AJ_G0028026.1 mouse_genomes_project 4 11361371 11380237 - MGP_AJ_P0064802 Otud6b protein_coding protein_coding MGP_AJ_T0064803.1 MGP_AJ_G0028026.1 mouse_genomes_project 4 11361915 11380045 - MGP_AJ_P0064803 Otud6b protein_coding nonsense_mediated_decay MGP_AJ_T0014493.1 MGP_AJ_G0012588.1 mouse_genomes_project 4 29610743 29610933 + processed_pseudogene processed_pseudogene MGP_AJ_T0065149.1 MGP_AJ_G0028117.1 mouse_genomes_project 4 37797543 37839502 + MGP_AJ_P0065149 Ubap1 protein_coding protein_coding MGP_AJ_T0065150.1 MGP_AJ_G0028117.1 mouse_genomes_project 4 37797543 37838743 + MGP_AJ_P0065150 Ubap1 protein_coding protein_coding MGP_AJ_T0065151.1 MGP_AJ_G0028117.1 mouse_genomes_project 4 37797595 37820260 + Ubap1 protein_coding processed_transcript MGP_AJ_T0065152.1 MGP_AJ_G0028117.1 mouse_genomes_project 4 37820222 37828367 + Ubap1 protein_coding processed_transcript MGP_AJ_T0065153.1 MGP_AJ_G0028117.1 mouse_genomes_project 4 37820699 37837669 + MGP_AJ_P0065153 Ubap1 protein_coding protein_coding MGP_AJ_T0069323.1 MGP_AJ_G0029093.1 mouse_genomes_project 4 146038226 146040090 + MGP_AJ_P0069323 Masp2 protein_coding protein_coding MGP_AJ_T0069324.1 MGP_AJ_G0029093.1 mouse_genomes_project 4 146038236 146051165 + MGP_AJ_P0069324 Masp2 protein_coding protein_coding MGP_AJ_T0069325.1 MGP_AJ_G0029093.1 mouse_genomes_project 4 146038240 146045863 + Masp2 protein_coding retained_intron MGP_AJ_T0069326.1 MGP_AJ_G0029093.1 mouse_genomes_project 4 146038247 146040090 + Masp2 protein_coding retained_intron MGP_AJ_T0014759.1 MGP_AJ_G0012854.1 mouse_genomes_project 4 120225356 120225765 + processed_pseudogene processed_pseudogene MGP_AJ_T0065112.1 MGP_AJ_G0028106.1 mouse_genomes_project 4 37249738 37298736 - MGP_AJ_P0065112 B4galt1 protein_coding protein_coding MGP_AJ_T0065113.1 MGP_AJ_G0028106.1 mouse_genomes_project 4 37254292 37298736 - MGP_AJ_P0065113 B4galt1 protein_coding protein_coding MGP_AJ_T0014758.1 MGP_AJ_G0012853.1 mouse_genomes_project 4 120017718 120018036 + processed_pseudogene processed_pseudogene MGP_AJ_T0018087.1 MGP_AJ_G0015552.1 mouse_genomes_project 4 121536632 121538223 + 9930104L06Rik processed_transcript processed_transcript MGP_AJ_T0018088.1 MGP_AJ_G0015552.1 mouse_genomes_project 4 121536642 121539039 + 9930104L06Rik processed_transcript retained_intron MGP_AJ_T0018089.1 MGP_AJ_G0015552.1 mouse_genomes_project 4 121536646 121541992 + 9930104L06Rik processed_transcript processed_transcript MGP_AJ_T0018090.1 MGP_AJ_G0015552.1 mouse_genomes_project 4 121536649 121544037 + 9930104L06Rik processed_transcript retained_intron MGP_AJ_T0018091.1 MGP_AJ_G0015552.1 mouse_genomes_project 4 121536658 121544038 + 9930104L06Rik processed_transcript processed_transcript MGP_AJ_T0018092.1 MGP_AJ_G0015552.1 mouse_genomes_project 4 121538362 121542141 + 9930104L06Rik processed_transcript processed_transcript MGP_AJ_T0018093.1 MGP_AJ_G0015552.1 mouse_genomes_project 4 121542512 121543246 + 9930104L06Rik processed_transcript processed_transcript MGP_AJ_T0065486.1 MGP_AJ_G0028181.1 mouse_genomes_project 4 40413102 40417419 - MGP_AJ_P0065486 Olfr159 protein_coding protein_coding MGP_AJ_T0102593.1 MGP_AJ_G0040335.1 mouse_genomes_project 4 85491493 85492038 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0066805.1 MGP_AJ_G0028502.1 mouse_genomes_project 4 104179678 104229110 + MGP_AJ_P0066805 Ndc1 protein_coding protein_coding MGP_AJ_T0066806.1 MGP_AJ_G0028502.1 mouse_genomes_project 4 104179774 104227097 + MGP_AJ_P0066806 Ndc1 protein_coding nonsense_mediated_decay MGP_AJ_T0066807.1 MGP_AJ_G0028502.1 mouse_genomes_project 4 104179809 104229087 + MGP_AJ_P0066807 Ndc1 protein_coding nonsense_mediated_decay MGP_AJ_T0066808.1 MGP_AJ_G0028502.1 mouse_genomes_project 4 104179946 104223914 + MGP_AJ_P0066808 Ndc1 protein_coding nonsense_mediated_decay MGP_AJ_T0066809.1 MGP_AJ_G0028502.1 mouse_genomes_project 4 104192923 104198417 + Ndc1 protein_coding processed_transcript MGP_AJ_T0066810.1 MGP_AJ_G0028502.1 mouse_genomes_project 4 104193300 104202102 + Ndc1 protein_coding retained_intron MGP_AJ_T0014576.1 MGP_AJ_G0012671.1 mouse_genomes_project 4 59449830 59463837 + processed_pseudogene processed_pseudogene MGP_AJ_T0014468.1 MGP_AJ_G0012563.1 mouse_genomes_project 4 23667721 23667991 - processed_pseudogene processed_pseudogene MGP_AJ_T0101228.1 MGP_AJ_G0039194.1 mouse_genomes_project 4 72041185 72041315 - Gm22864 snoRNA snoRNA MGP_AJ_T0010615.1 MGP_AJ_G0008737.1 mouse_genomes_project 4 121328185 121328294 + Mir697 miRNA miRNA MGP_AJ_T0014600.1 MGP_AJ_G0012695.1 mouse_genomes_project 4 70829132 70829928 + processed_pseudogene processed_pseudogene MGP_AJ_T0069906.1 MGP_AJ_G0029195.1 mouse_genomes_project 4 153431061 153443020 + MGP_AJ_P0069906 Ccnl2 protein_coding protein_coding MGP_AJ_T0069907.1 MGP_AJ_G0029195.1 mouse_genomes_project 4 153431073 153443020 + Ccnl2 protein_coding retained_intron MGP_AJ_T0069908.1 MGP_AJ_G0029195.1 mouse_genomes_project 4 153431091 153440371 + Ccnl2 protein_coding retained_intron MGP_AJ_T0069909.1 MGP_AJ_G0029195.1 mouse_genomes_project 4 153431350 153434419 + Ccnl2 protein_coding retained_intron MGP_AJ_T0069910.1 MGP_AJ_G0029195.1 mouse_genomes_project 4 153432057 153442780 + MGP_AJ_P0069910 Ccnl2 protein_coding nonsense_mediated_decay MGP_AJ_T0069911.1 MGP_AJ_G0029195.1 mouse_genomes_project 4 153438063 153442830 + MGP_AJ_P0069911 Ccnl2 protein_coding unknown_likely_coding MGP_AJ_T0066532.1 MGP_AJ_G0028445.1 mouse_genomes_project 4 96490763 96505354 + Alg6 protein_coding retained_intron MGP_AJ_T0066533.1 MGP_AJ_G0028445.1 mouse_genomes_project 4 96490764 96534316 + Alg6 protein_coding retained_intron MGP_AJ_T0066534.1 MGP_AJ_G0028445.1 mouse_genomes_project 4 96490764 96535465 + MGP_AJ_P0066534 Alg6 protein_coding protein_coding MGP_AJ_T0066535.1 MGP_AJ_G0028445.1 mouse_genomes_project 4 96490775 96518383 + Alg6 protein_coding processed_transcript MGP_AJ_T0066536.1 MGP_AJ_G0028445.1 mouse_genomes_project 4 96490775 96525081 + MGP_AJ_P0066536 Alg6 protein_coding protein_coding MGP_AJ_T0066537.1 MGP_AJ_G0028445.1 mouse_genomes_project 4 96490775 96524890 + MGP_AJ_P0066537 Alg6 protein_coding protein_coding MGP_AJ_T0066538.1 MGP_AJ_G0028445.1 mouse_genomes_project 4 96494243 96511234 + Alg6 protein_coding retained_intron MGP_AJ_T0010640.1 MGP_AJ_G0008762.1 mouse_genomes_project 4 136366532 136366602 + Mir7020 miRNA miRNA MGP_AJ_T0067541.1 MGP_AJ_G0028656.1 mouse_genomes_project 4 115755544 115776014 - MGP_AJ_P0067541 Ppih protein_coding protein_coding MGP_AJ_T0067542.1 MGP_AJ_G0028656.1 mouse_genomes_project 4 115755544 115776001 - MGP_AJ_P0067542 Ppih protein_coding protein_coding MGP_AJ_T0067543.1 MGP_AJ_G0028656.1 mouse_genomes_project 4 115755544 115776063 - MGP_AJ_P0067543 Ppih protein_coding protein_coding MGP_AJ_T0067544.1 MGP_AJ_G0028656.1 mouse_genomes_project 4 115762106 115775934 - MGP_AJ_P0067544 Ppih protein_coding protein_coding MGP_AJ_T0067545.1 MGP_AJ_G0028656.1 mouse_genomes_project 4 115762680 115776001 - MGP_AJ_P0067545 Ppih protein_coding protein_coding MGP_AJ_T0067546.1 MGP_AJ_G0028656.1 mouse_genomes_project 4 115766981 115776016 - MGP_AJ_P0067546 Ppih protein_coding protein_coding MGP_AJ_T0014442.1 MGP_AJ_G0012537.1 mouse_genomes_project 4 15848385 15849237 + processed_pseudogene processed_pseudogene MGP_AJ_T0069273.1 MGP_AJ_G0029081.1 mouse_genomes_project 4 145495246 145506522 - MGP_AJ_P0069273 Agtrap protein_coding protein_coding MGP_AJ_T0069274.1 MGP_AJ_G0029081.1 mouse_genomes_project 4 145498702 145503001 - Agtrap protein_coding processed_transcript MGP_AJ_T0069275.1 MGP_AJ_G0029081.1 mouse_genomes_project 4 145502100 145506522 - Agtrap protein_coding retained_intron MGP_AJ_T0005624.1 MGP_AJ_G0004737.1 mouse_genomes_project 4 104596766 104605536 - Lrp8os3 bidirectional_promoter_lncRNA bidirectional_promoter_lncRNA MGP_AJ_T0014742.1 MGP_AJ_G0012837.1 mouse_genomes_project 4 115981446 115982402 - processed_pseudogene processed_pseudogene MGP_AJ_T0065254.1 MGP_AJ_G0028141.1 mouse_genomes_project 4 38231487 38232076 - MGP_AJ_P0065254 protein_coding protein_coding MGP_AJ_T0068517.1 MGP_AJ_G0028872.1 mouse_genomes_project 4 130715288 130716672 - MGP_AJ_P0068517 Sh3bgrl3 protein_coding protein_coding MGP_AJ_T0068518.1 MGP_AJ_G0028872.1 mouse_genomes_project 4 130715295 130716622 - MGP_AJ_P0068518 Sh3bgrl3 protein_coding protein_coding MGP_AJ_T0068519.1 MGP_AJ_G0028872.1 mouse_genomes_project 4 130715722 130716620 - Sh3bgrl3 protein_coding retained_intron MGP_AJ_T0065137.1 MGP_AJ_G0028114.1 mouse_genomes_project 4 37581178 37640716 + MGP_AJ_P0065137 Ube2r2 protein_coding protein_coding MGP_AJ_T0065138.1 MGP_AJ_G0028114.1 mouse_genomes_project 4 37630098 37638159 + Ube2r2 protein_coding retained_intron MGP_AJ_T0065139.1 MGP_AJ_G0028114.1 mouse_genomes_project 4 37636231 37638372 + Ube2r2 protein_coding retained_intron MGP_AJ_T0014430.1 MGP_AJ_G0012525.1 mouse_genomes_project 4 12944286 12945503 - processed_pseudogene processed_pseudogene MGP_AJ_T0067947.1 MGP_AJ_G0028760.1 mouse_genomes_project 4 124654619 125011981 + Csmd2 protein_coding processed_transcript MGP_AJ_T0067948.1 MGP_AJ_G0028760.1 mouse_genomes_project 4 124654803 125086776 + Csmd2 protein_coding retained_intron MGP_AJ_T0067949.1 MGP_AJ_G0028760.1 mouse_genomes_project 4 124654829 125228190 + MGP_AJ_P0067949 Csmd2 protein_coding protein_coding MGP_AJ_T0067951.1 MGP_AJ_G0028760.1 mouse_genomes_project 4 125137148 125160634 + Csmd2 protein_coding processed_transcript MGP_AJ_T0067952.1 MGP_AJ_G0028760.1 mouse_genomes_project 4 125179090 125188946 + Csmd2 protein_coding processed_transcript MGP_AJ_T0067953.1 MGP_AJ_G0028760.1 mouse_genomes_project 4 125208475 125213277 + Csmd2 protein_coding processed_transcript MGP_AJ_T0069933.1 MGP_AJ_G0029199.1 mouse_genomes_project 4 153477632 153481713 - MGP_AJ_P0069933 Tas1r3 protein_coding protein_coding MGP_AJ_T0067081.1 MGP_AJ_G0028551.1 mouse_genomes_project 4 111164589 111199404 + MGP_AJ_P0067081 Gm12830 protein_coding protein_coding MGP_AJ_T0014762.1 MGP_AJ_G0012857.1 mouse_genomes_project 4 120493560 120493882 + processed_pseudogene processed_pseudogene MGP_AJ_T0099981.1 MGP_AJ_G0037947.1 mouse_genomes_project 4 148472982 148473142 + Gm23405 snRNA snRNA MGP_AJ_T0102617.1 MGP_AJ_G0040359.1 mouse_genomes_project 4 119313841 119328592 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0066053.1 MGP_AJ_G0028325.1 mouse_genomes_project 4 60103352 60106956 + MGP_AJ_P0066053 Orm1 protein_coding protein_coding MGP_AJ_T0099939.1 MGP_AJ_G0037905.1 mouse_genomes_project 4 98018527 98018691 + Gm25124 snRNA snRNA MGP_AJ_T0099913.1 MGP_AJ_G0037879.1 mouse_genomes_project 4 39835763 39835828 - Gm25010 snRNA snRNA MGP_AJ_T0066690.1 MGP_AJ_G0028482.1 mouse_genomes_project 4 103287439 103296190 - MGP_AJ_P0066690 Bsnd protein_coding protein_coding MGP_AJ_T0008021.1 MGP_AJ_G0006543.1 mouse_genomes_project 4 137624024 137629379 + 4930515B02Rik lincRNA lincRNA MGP_AJ_T0068950.1 MGP_AJ_G0028976.1 mouse_genomes_project 4 136071318 136097014 + MGP_AJ_P0068950 Emc1 protein_coding protein_coding MGP_AJ_T0068951.1 MGP_AJ_G0028976.1 mouse_genomes_project 4 136071324 136097014 + MGP_AJ_P0068951 Emc1 protein_coding protein_coding MGP_AJ_T0068952.1 MGP_AJ_G0028976.1 mouse_genomes_project 4 136071324 136097014 + MGP_AJ_P0068952 Emc1 protein_coding protein_coding MGP_AJ_T0068953.1 MGP_AJ_G0028976.1 mouse_genomes_project 4 136071340 136073196 + Emc1 protein_coding processed_transcript MGP_AJ_T0068955.1 MGP_AJ_G0028976.1 mouse_genomes_project 4 136077931 136094211 + Emc1 protein_coding processed_transcript MGP_AJ_T0014828.1 MGP_AJ_G0012923.1 mouse_genomes_project 4 146538789 146539109 + processed_pseudogene processed_pseudogene MGP_AJ_T0066977.1 MGP_AJ_G0028532.1 mouse_genomes_project 4 106096456 106195178 + MGP_AJ_P0066977 Eps15 protein_coding protein_coding MGP_AJ_T0066978.1 MGP_AJ_G0028532.1 mouse_genomes_project 4 106096491 106193048 + MGP_AJ_P0066978 Eps15 protein_coding nonsense_mediated_decay MGP_AJ_T0066979.1 MGP_AJ_G0028532.1 mouse_genomes_project 4 106096564 106126566 + MGP_AJ_P0066979 Eps15 protein_coding protein_coding MGP_AJ_T0066980.1 MGP_AJ_G0028532.1 mouse_genomes_project 4 106096600 106192828 + MGP_AJ_P0066980 Eps15 protein_coding protein_coding MGP_AJ_T0066981.1 MGP_AJ_G0028532.1 mouse_genomes_project 4 106096600 106192828 + MGP_AJ_P0066981 Eps15 protein_coding protein_coding MGP_AJ_T0066982.1 MGP_AJ_G0028532.1 mouse_genomes_project 4 106118136 106119598 + Eps15 protein_coding retained_intron MGP_AJ_T0066983.1 MGP_AJ_G0028532.1 mouse_genomes_project 4 106122807 106126865 + Eps15 protein_coding retained_intron MGP_AJ_T0066984.1 MGP_AJ_G0028532.1 mouse_genomes_project 4 106156746 106193927 + MGP_AJ_P0066984 Eps15 protein_coding protein_coding MGP_AJ_T0066985.1 MGP_AJ_G0028532.1 mouse_genomes_project 4 106156940 106174268 + Eps15 protein_coding retained_intron MGP_AJ_T0066986.1 MGP_AJ_G0028532.1 mouse_genomes_project 4 106177990 106193144 + MGP_AJ_P0066986 Eps15 protein_coding protein_coding MGP_AJ_T0066987.1 MGP_AJ_G0028532.1 mouse_genomes_project 4 106178034 106190221 + Eps15 protein_coding processed_transcript MGP_AJ_T0065496.1 MGP_AJ_G0028187.1 mouse_genomes_project 4 40625651 40627592 + MGP_AJ_P0065496 Ccin protein_coding protein_coding MGP_AJ_T0008017.1 MGP_AJ_G0006539.1 mouse_genomes_project 4 137125207 137130625 + Gm13017 lincRNA lincRNA MGP_AJ_T0065534.1 MGP_AJ_G0028192.1 mouse_genomes_project 4 41185045 41370356 - MGP_AJ_P0065534 Pax5 protein_coding protein_coding MGP_AJ_T0065535.1 MGP_AJ_G0028192.1 mouse_genomes_project 4 41191431 41370287 - MGP_AJ_P0065535 Pax5 protein_coding nonsense_mediated_decay MGP_AJ_T0065536.1 MGP_AJ_G0028192.1 mouse_genomes_project 4 41191431 41370287 - MGP_AJ_P0065536 Pax5 protein_coding protein_coding MGP_AJ_T0065537.1 MGP_AJ_G0028192.1 mouse_genomes_project 4 41191431 41370287 - MGP_AJ_P0065537 Pax5 protein_coding protein_coding MGP_AJ_T0065538.1 MGP_AJ_G0028192.1 mouse_genomes_project 4 41191431 41370287 - MGP_AJ_P0065538 Pax5 protein_coding protein_coding MGP_AJ_T0065539.1 MGP_AJ_G0028192.1 mouse_genomes_project 4 41191431 41370287 - MGP_AJ_P0065539 Pax5 protein_coding protein_coding MGP_AJ_T0065540.1 MGP_AJ_G0028192.1 mouse_genomes_project 4 41191783 41370277 - MGP_AJ_P0065540 Pax5 protein_coding protein_coding MGP_AJ_T0065541.1 MGP_AJ_G0028192.1 mouse_genomes_project 4 41191783 41370277 - MGP_AJ_P0065541 Pax5 protein_coding protein_coding MGP_AJ_T0065542.1 MGP_AJ_G0028192.1 mouse_genomes_project 4 41191783 41370277 - MGP_AJ_P0065542 Pax5 protein_coding protein_coding MGP_AJ_T0065543.1 MGP_AJ_G0028192.1 mouse_genomes_project 4 41191783 41370277 - MGP_AJ_P0065543 Pax5 protein_coding protein_coding MGP_AJ_T0065544.1 MGP_AJ_G0028192.1 mouse_genomes_project 4 41191783 41370277 - MGP_AJ_P0065544 Pax5 protein_coding protein_coding MGP_AJ_T0065545.1 MGP_AJ_G0028192.1 mouse_genomes_project 4 41191783 41370277 - MGP_AJ_P0065545 Pax5 protein_coding protein_coding MGP_AJ_T0065546.1 MGP_AJ_G0028192.1 mouse_genomes_project 4 41191783 41370277 - MGP_AJ_P0065546 Pax5 protein_coding nonsense_mediated_decay MGP_AJ_T0065547.1 MGP_AJ_G0028192.1 mouse_genomes_project 4 41191790 41305482 - MGP_AJ_P0065547 Pax5 protein_coding protein_coding MGP_AJ_T0065548.1 MGP_AJ_G0028192.1 mouse_genomes_project 4 41229840 41343512 - Pax5 protein_coding processed_transcript MGP_AJ_T0065549.1 MGP_AJ_G0028192.1 mouse_genomes_project 4 41339136 41363871 - MGP_AJ_P0065549 Pax5 protein_coding protein_coding MGP_AJ_T0065550.1 MGP_AJ_G0028192.1 mouse_genomes_project 4 41339150 41363278 - Pax5 protein_coding processed_transcript MGP_AJ_T0065551.1 MGP_AJ_G0028192.1 mouse_genomes_project 4 41339150 41363278 - Pax5 protein_coding processed_transcript MGP_AJ_T0065552.1 MGP_AJ_G0028192.1 mouse_genomes_project 4 41339150 41363278 - Pax5 protein_coding processed_transcript MGP_AJ_T0065553.1 MGP_AJ_G0028192.1 mouse_genomes_project 4 41339150 41363278 - MGP_AJ_P0065553 Pax5 protein_coding protein_coding MGP_AJ_T0010632.1 MGP_AJ_G0008754.1 mouse_genomes_project 4 132124815 132124944 - Gm25317 miRNA miRNA MGP_AJ_T0007903.1 MGP_AJ_G0006460.1 mouse_genomes_project 4 91925345 91941622 + Gm12708 lincRNA lincRNA MGP_AJ_T0007904.1 MGP_AJ_G0006460.1 mouse_genomes_project 4 91925394 91938143 + Gm12708 lincRNA lincRNA MGP_AJ_T0101240.1 MGP_AJ_G0039206.1 mouse_genomes_project 4 102920041 102920154 - Gm26047 snoRNA snoRNA MGP_AJ_T0101263.1 MGP_AJ_G0039229.1 mouse_genomes_project 4 128866588 128866662 + Snord99 snoRNA snoRNA MGP_AJ_T0099932.1 MGP_AJ_G0037898.1 mouse_genomes_project 4 92251646 92251815 + Gm25004 snRNA snRNA MGP_AJ_T0064863.1 MGP_AJ_G0028049.1 mouse_genomes_project 4 18215402 18224277 - MGP_AJ_P0064863 Tstd3 protein_coding protein_coding MGP_AJ_T0065963.1 MGP_AJ_G0028301.1 mouse_genomes_project 4 56467858 56566942 + MGP_AJ_P0065963 Snx30 protein_coding protein_coding MGP_AJ_T0065964.1 MGP_AJ_G0028301.1 mouse_genomes_project 4 56467898 56496053 + Snx30 protein_coding processed_transcript MGP_AJ_T0065965.1 MGP_AJ_G0028301.1 mouse_genomes_project 4 56546880 56562728 + Snx30 protein_coding processed_transcript MGP_AJ_T0065966.1 MGP_AJ_G0028301.1 mouse_genomes_project 4 56546966 56556752 + Snx30 protein_coding processed_transcript MGP_AJ_T0102622.1 MGP_AJ_G0040364.1 mouse_genomes_project 4 141289348 141291257 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0065778.1 MGP_AJ_G0028249.1 mouse_genomes_project 4 47894187 47906222 + MGP_AJ_P0065778 Cylc2 protein_coding protein_coding MGP_AJ_T0065779.1 MGP_AJ_G0028249.1 mouse_genomes_project 4 47894187 47905878 + MGP_AJ_P0065779 Cylc2 protein_coding protein_coding MGP_AJ_T0066402.1 MGP_AJ_G0028417.1 mouse_genomes_project 4 91632302 91647217 - MGP_AJ_P0066402 Eqtn protein_coding protein_coding MGP_AJ_T0066403.1 MGP_AJ_G0028417.1 mouse_genomes_project 4 91632466 91647168 - MGP_AJ_P0066403 Eqtn protein_coding protein_coding MGP_AJ_T0014639.1 MGP_AJ_G0012734.1 mouse_genomes_project 4 84392798 84393580 + processed_pseudogene processed_pseudogene MGP_AJ_T0007943.1 MGP_AJ_G0006491.1 mouse_genomes_project 4 117087963 117094904 + Gm12860 lincRNA lincRNA MGP_AJ_T0066554.1 MGP_AJ_G0028451.1 mouse_genomes_project 4 97526259 97763656 + MGP_AJ_P0066554 Cachd1 protein_coding protein_coding MGP_AJ_T0066555.1 MGP_AJ_G0028451.1 mouse_genomes_project 4 97526259 97781361 + MGP_AJ_P0066555 Cachd1 protein_coding protein_coding MGP_AJ_T0066556.1 MGP_AJ_G0028451.1 mouse_genomes_project 4 97753699 97762170 + Cachd1 protein_coding processed_transcript MGP_AJ_T0066557.1 MGP_AJ_G0028451.1 mouse_genomes_project 4 97753798 97762340 + Cachd1 protein_coding processed_transcript MGP_AJ_T0067886.1 MGP_AJ_G0028743.1 mouse_genomes_project 4 123256798 123261236 + MGP_AJ_P0067886 5730409E04Rik protein_coding protein_coding MGP_AJ_T0067887.1 MGP_AJ_G0028743.1 mouse_genomes_project 4 123256834 123261236 + MGP_AJ_P0067887 5730409E04Rik protein_coding protein_coding MGP_AJ_T0067756.1 MGP_AJ_G0028713.1 mouse_genomes_project 4 121397844 121450732 + MGP_AJ_P0067756 Mtf1 protein_coding protein_coding MGP_AJ_T0067757.1 MGP_AJ_G0028713.1 mouse_genomes_project 4 121398289 121415536 + MGP_AJ_P0067757 Mtf1 protein_coding protein_coding MGP_AJ_T0067758.1 MGP_AJ_G0028713.1 mouse_genomes_project 4 121398289 121451153 + MGP_AJ_P0067758 Mtf1 protein_coding protein_coding MGP_AJ_T0067759.1 MGP_AJ_G0028713.1 mouse_genomes_project 4 121398322 121400911 + Mtf1 protein_coding retained_intron MGP_AJ_T0067760.1 MGP_AJ_G0028713.1 mouse_genomes_project 4 121398418 121400273 + MGP_AJ_P0067760 Mtf1 protein_coding protein_coding MGP_AJ_T0066933.1 MGP_AJ_G0028525.1 mouse_genomes_project 4 105640218 105667234 + MGP_AJ_P0066933 Txndc12 protein_coding protein_coding MGP_AJ_T0066934.1 MGP_AJ_G0028525.1 mouse_genomes_project 4 105640252 105652150 + Txndc12 protein_coding processed_transcript MGP_AJ_T0066937.1 MGP_AJ_G0028525.1 mouse_genomes_project 4 105662593 105664389 + Txndc12 protein_coding processed_transcript MGP_AJ_T0067780.1 MGP_AJ_G0028719.1 mouse_genomes_project 4 121587058 121609677 + MGP_AJ_P0067780 Rspo1 protein_coding protein_coding MGP_AJ_T0067781.1 MGP_AJ_G0028719.1 mouse_genomes_project 4 121608057 121609103 + Rspo1 protein_coding processed_transcript MGP_AJ_T0007810.1 MGP_AJ_G0006378.1 mouse_genomes_project 4 8531548 8539239 + Gm26895 lincRNA lincRNA MGP_AJ_T0068050.1 MGP_AJ_G0028781.1 mouse_genomes_project 4 126102549 126118036 - MGP_AJ_P0068050 Zbtb8b protein_coding protein_coding MGP_AJ_T0068051.1 MGP_AJ_G0028781.1 mouse_genomes_project 4 126102549 126118001 - MGP_AJ_P0068051 Zbtb8b protein_coding protein_coding MGP_AJ_T0068052.1 MGP_AJ_G0028781.1 mouse_genomes_project 4 126103053 126109314 - Zbtb8b protein_coding processed_transcript MGP_AJ_T0068053.1 MGP_AJ_G0028781.1 mouse_genomes_project 4 126105929 126118003 - Zbtb8b protein_coding retained_intron MGP_AJ_T0014507.1 MGP_AJ_G0012602.1 mouse_genomes_project 4 34403068 34405006 + processed_pseudogene processed_pseudogene MGP_AJ_T0014521.1 MGP_AJ_G0012616.1 mouse_genomes_project 4 37615408 37616367 + processed_pseudogene processed_pseudogene MGP_AJ_T0007856.1 MGP_AJ_G0006419.1 mouse_genomes_project 4 51281729 51311021 + Gm12478 lincRNA lincRNA MGP_AJ_T0014429.1 MGP_AJ_G0012524.1 mouse_genomes_project 4 12808215 12810048 + processed_pseudogene processed_pseudogene MGP_AJ_T0068210.1 MGP_AJ_G0028810.1 mouse_genomes_project 4 127053850 127084806 + MGP_AJ_P0068210 Snrnp40 protein_coding protein_coding MGP_AJ_T0068211.1 MGP_AJ_G0028810.1 mouse_genomes_project 4 127053912 127070355 + Snrnp40 protein_coding processed_transcript MGP_AJ_T0068212.1 MGP_AJ_G0028810.1 mouse_genomes_project 4 127056345 127059151 + Snrnp40 protein_coding processed_transcript MGP_AJ_T0068213.1 MGP_AJ_G0028810.1 mouse_genomes_project 4 127079800 127083408 + Snrnp40 protein_coding processed_transcript MGP_AJ_T0065889.1 MGP_AJ_G0028282.1 mouse_genomes_project 4 54603404 54616407 - MGP_AJ_P0065889 Txn1 protein_coding protein_coding MGP_AJ_T0101226.1 MGP_AJ_G0039192.1 mouse_genomes_project 4 71411843 71411981 + Gm26379 snoRNA snoRNA MGP_AJ_T0066456.1 MGP_AJ_G0028430.1 mouse_genomes_project 4 93421194 93484813 - MGP_AJ_P0066456 Gm12695 protein_coding protein_coding MGP_AJ_T0007908.1 MGP_AJ_G0006464.1 mouse_genomes_project 4 96426913 96428290 - Gm12688 lincRNA lincRNA MGP_AJ_T0101210.1 MGP_AJ_G0039176.1 mouse_genomes_project 4 50541403 50541528 + Gm23745 snoRNA snoRNA MGP_AJ_T0066353.1 MGP_AJ_G0028399.1 mouse_genomes_project 4 85646920 85647481 + MGP_AJ_P0066353 Ifna4 protein_coding protein_coding MGP_AJ_T0011564.1 MGP_AJ_G0009686.1 mouse_genomes_project 4 44258936 44259063 + Gm27601 misc_RNA misc_RNA MGP_AJ_T0010641.1 MGP_AJ_G0008763.1 mouse_genomes_project 4 136694986 136695081 - Mir2139 miRNA miRNA MGP_AJ_T0101243.1 MGP_AJ_G0039209.1 mouse_genomes_project 4 113564717 113564788 - Snord38a snoRNA snoRNA MGP_AJ_T0007933.1 MGP_AJ_G0006481.1 mouse_genomes_project 4 104758064 104764868 + 4930407G08Rik lincRNA lincRNA MGP_AJ_T0007894.1 MGP_AJ_G0006452.1 mouse_genomes_project 4 86046306 86088766 - Gm12606 lincRNA lincRNA MGP_AJ_T0007895.1 MGP_AJ_G0006452.1 mouse_genomes_project 4 86046324 86089670 - Gm12606 lincRNA lincRNA MGP_AJ_T0069418.1 MGP_AJ_G0029107.1 mouse_genomes_project 4 146973714 147023289 + MGP_AJ_P0069418 Ctnnbip1 protein_coding protein_coding MGP_AJ_T0069419.1 MGP_AJ_G0029107.1 mouse_genomes_project 4 147001023 147021359 + MGP_AJ_P0069419 Ctnnbip1 protein_coding protein_coding MGP_AJ_T0066349.1 MGP_AJ_G0028395.1 mouse_genomes_project 4 85608434 85609601 + MGP_AJ_P0066349 protein_coding protein_coding MGP_AJ_T0066337.1 MGP_AJ_G0028387.1 mouse_genomes_project 4 85410157 85416879 - MGP_AJ_P0066337 C87499 protein_coding protein_coding MGP_AJ_T0066338.1 MGP_AJ_G0028387.1 mouse_genomes_project 4 85410157 85416831 - MGP_AJ_P0066338 C87499 protein_coding protein_coding MGP_AJ_T0066339.1 MGP_AJ_G0028387.1 mouse_genomes_project 4 85411006 85417031 - MGP_AJ_P0066339 C87499 protein_coding protein_coding MGP_AJ_T0066340.1 MGP_AJ_G0028387.1 mouse_genomes_project 4 85411735 85416762 - MGP_AJ_P0066340 C87499 protein_coding protein_coding MGP_AJ_T0066341.1 MGP_AJ_G0028387.1 mouse_genomes_project 4 85412025 85416811 - MGP_AJ_P0066341 C87499 protein_coding protein_coding MGP_AJ_T0004606.1 MGP_AJ_G0003993.1 mouse_genomes_project 4 149972162 149972625 + Gm16333 antisense antisense MGP_AJ_T0065862.1 MGP_AJ_G0028275.1 mouse_genomes_project 4 53603969 53638859 - MGP_AJ_P0065862 Frrs1l protein_coding protein_coding MGP_AJ_T0065863.1 MGP_AJ_G0028275.1 mouse_genomes_project 4 53606958 53638604 - MGP_AJ_P0065863 Frrs1l protein_coding nonsense_mediated_decay MGP_AJ_T0014686.1 MGP_AJ_G0012781.1 mouse_genomes_project 4 99903272 99903488 + processed_pseudogene processed_pseudogene MGP_AJ_T0018058.1 MGP_AJ_G0015530.1 mouse_genomes_project 4 82230142 82508489 + processed_transcript processed_transcript MGP_AJ_T0066719.1 MGP_AJ_G0028490.1 mouse_genomes_project 4 103546879 103601565 - MGP_AJ_P0066719 Acot11 protein_coding protein_coding MGP_AJ_T0066720.1 MGP_AJ_G0028490.1 mouse_genomes_project 4 103549563 103607507 - MGP_AJ_P0066720 Acot11 protein_coding protein_coding MGP_AJ_T0066721.1 MGP_AJ_G0028490.1 mouse_genomes_project 4 103549719 103573438 - MGP_AJ_P0066721 Acot11 protein_coding nonsense_mediated_decay MGP_AJ_T0066722.1 MGP_AJ_G0028490.1 mouse_genomes_project 4 103556042 103558289 - Acot11 protein_coding processed_transcript MGP_AJ_T0066723.1 MGP_AJ_G0028490.1 mouse_genomes_project 4 103564133 103601562 - MGP_AJ_P0066723 Acot11 protein_coding nonsense_mediated_decay MGP_AJ_T0066724.1 MGP_AJ_G0028490.1 mouse_genomes_project 4 103565541 103601509 - MGP_AJ_P0066724 Acot11 protein_coding protein_coding MGP_AJ_T0066725.1 MGP_AJ_G0028490.1 mouse_genomes_project 4 103565584 103601968 - MGP_AJ_P0066725 Acot11 protein_coding protein_coding MGP_AJ_T0066888.1 MGP_AJ_G0028514.1 mouse_genomes_project 4 105036916 105104525 - MGP_AJ_P0066888 Zyg11b protein_coding protein_coding MGP_AJ_T0066889.1 MGP_AJ_G0028514.1 mouse_genomes_project 4 105048658 105049231 - Zyg11b protein_coding processed_transcript MGP_AJ_T0004585.1 MGP_AJ_G0003977.1 mouse_genomes_project 4 145417778 145420702 - Gm13054 antisense antisense MGP_AJ_T0010634.1 MGP_AJ_G0008756.1 mouse_genomes_project 4 133846866 133846936 + Gm25399 miRNA miRNA MGP_AJ_T0018059.1 MGP_AJ_G0015531.1 mouse_genomes_project 4 85911141 85939117 - Gm12602 processed_transcript processed_transcript MGP_AJ_T0018060.1 MGP_AJ_G0015531.1 mouse_genomes_project 4 85934704 85939072 - Gm12602 processed_transcript processed_transcript MGP_AJ_T0010593.1 MGP_AJ_G0008715.1 mouse_genomes_project 4 64407484 64407555 + Gm44497 miRNA miRNA MGP_AJ_T0065888.1 MGP_AJ_G0028281.1 mouse_genomes_project 4 54566483 54576370 - MGP_AJ_P0065888 D630039A03Rik protein_coding protein_coding MGP_AJ_T0068967.1 MGP_AJ_G0028978.1 mouse_genomes_project 4 136295572 136342827 + MGP_AJ_P0068967 Iffo2 protein_coding protein_coding MGP_AJ_T0004543.1 MGP_AJ_G0003945.1 mouse_genomes_project 4 126712675 126736067 - Gm12963 antisense antisense MGP_AJ_T0004544.1 MGP_AJ_G0003945.1 mouse_genomes_project 4 126715282 126736067 - Gm12963 antisense antisense MGP_AJ_T0004545.1 MGP_AJ_G0003945.1 mouse_genomes_project 4 126715286 126716899 - Gm12963 antisense antisense MGP_AJ_T0102579.1 MGP_AJ_G0040321.1 mouse_genomes_project 4 38253879 38290216 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0069356.1 MGP_AJ_G0029095.1 mouse_genomes_project 4 146083461 146112890 + MGP_AJ_P0069356 Gm572 protein_coding protein_coding MGP_AJ_T0007798.1 MGP_AJ_G0006371.1 mouse_genomes_project 4 2092807 2098792 - Gm11782 lincRNA lincRNA MGP_AJ_T0065196.1 MGP_AJ_G0028129.1 mouse_genomes_project 4 38194915 38197779 - MGP_AJ_P0065196 Sigmar1 protein_coding protein_coding MGP_AJ_T0065197.1 MGP_AJ_G0028129.1 mouse_genomes_project 4 38194915 38197779 - MGP_AJ_P0065197 Sigmar1 protein_coding protein_coding MGP_AJ_T0065198.1 MGP_AJ_G0028129.1 mouse_genomes_project 4 38195520 38201497 - Sigmar1 protein_coding processed_transcript MGP_AJ_T0065199.1 MGP_AJ_G0028129.1 mouse_genomes_project 4 38195925 38211852 - Sigmar1 protein_coding processed_transcript MGP_AJ_T0065200.1 MGP_AJ_G0028129.1 mouse_genomes_project 4 38196868 38197606 - Sigmar1 protein_coding retained_intron MGP_AJ_T0065201.1 MGP_AJ_G0028129.1 mouse_genomes_project 4 38197000 38197468 - Sigmar1 protein_coding retained_intron MGP_AJ_T0065202.1 MGP_AJ_G0028129.1 mouse_genomes_project 4 38197022 38197740 - Sigmar1 protein_coding processed_transcript MGP_AJ_T0065203.1 MGP_AJ_G0028129.1 mouse_genomes_project 4 38211280 38212610 - Sigmar1 protein_coding processed_transcript MGP_AJ_T0068450.1 MGP_AJ_G0028862.1 mouse_genomes_project 4 130243545 130255970 - MGP_AJ_P0068450 Pigv protein_coding protein_coding MGP_AJ_T0068451.1 MGP_AJ_G0028862.1 mouse_genomes_project 4 130245403 130255970 - MGP_AJ_P0068451 Pigv protein_coding protein_coding MGP_AJ_T0068452.1 MGP_AJ_G0028862.1 mouse_genomes_project 4 130252070 130255970 - Pigv protein_coding processed_transcript MGP_AJ_T0066015.1 MGP_AJ_G0028319.1 mouse_genomes_project 4 59285401 59308826 + MGP_AJ_P0066015 4933430I17Rik protein_coding protein_coding MGP_AJ_T0066016.1 MGP_AJ_G0028319.1 mouse_genomes_project 4 59285840 59308595 + MGP_AJ_P0066016 4933430I17Rik protein_coding unknown_likely_coding MGP_AJ_T0008018.1 MGP_AJ_G0006540.1 mouse_genomes_project 4 137159673 137166961 + Gm13021 lincRNA lincRNA MGP_AJ_T0066954.1 MGP_AJ_G0028530.1 mouse_genomes_project 4 105872900 105930322 - MGP_AJ_P0066954 Osbpl9 protein_coding protein_coding MGP_AJ_T0066955.1 MGP_AJ_G0028530.1 mouse_genomes_project 4 105873370 106014920 - MGP_AJ_P0066955 Osbpl9 protein_coding protein_coding MGP_AJ_T0066956.1 MGP_AJ_G0028530.1 mouse_genomes_project 4 105873405 105930336 - MGP_AJ_P0066956 Osbpl9 protein_coding protein_coding MGP_AJ_T0066957.1 MGP_AJ_G0028530.1 mouse_genomes_project 4 105873410 106014920 - MGP_AJ_P0066957 Osbpl9 protein_coding nonsense_mediated_decay MGP_AJ_T0066958.1 MGP_AJ_G0028530.1 mouse_genomes_project 4 105873410 106014903 - MGP_AJ_P0066958 Osbpl9 protein_coding protein_coding MGP_AJ_T0066959.1 MGP_AJ_G0028530.1 mouse_genomes_project 4 105873410 106014958 - MGP_AJ_P0066959 Osbpl9 protein_coding protein_coding MGP_AJ_T0066960.1 MGP_AJ_G0028530.1 mouse_genomes_project 4 105873729 105899205 - Osbpl9 protein_coding processed_transcript MGP_AJ_T0066961.1 MGP_AJ_G0028530.1 mouse_genomes_project 4 105873834 106014958 - MGP_AJ_P0066961 Osbpl9 protein_coding protein_coding MGP_AJ_T0066962.1 MGP_AJ_G0028530.1 mouse_genomes_project 4 105873842 105968769 - MGP_AJ_P0066962 Osbpl9 protein_coding protein_coding MGP_AJ_T0066963.1 MGP_AJ_G0028530.1 mouse_genomes_project 4 105876189 105877742 - Osbpl9 protein_coding processed_transcript MGP_AJ_T0066964.1 MGP_AJ_G0028530.1 mouse_genomes_project 4 105879760 105883841 - Osbpl9 protein_coding processed_transcript MGP_AJ_T0066965.1 MGP_AJ_G0028530.1 mouse_genomes_project 4 105880114 105929998 - Osbpl9 protein_coding processed_transcript MGP_AJ_T0066966.1 MGP_AJ_G0028530.1 mouse_genomes_project 4 105894844 105922073 - Osbpl9 protein_coding processed_transcript MGP_AJ_T0066967.1 MGP_AJ_G0028530.1 mouse_genomes_project 4 105894968 105968955 - Osbpl9 protein_coding retained_intron MGP_AJ_T0066968.1 MGP_AJ_G0028530.1 mouse_genomes_project 4 105898157 105900535 - Osbpl9 protein_coding retained_intron MGP_AJ_T0066969.1 MGP_AJ_G0028530.1 mouse_genomes_project 4 105899165 105920340 - Osbpl9 protein_coding processed_transcript MGP_AJ_T0066970.1 MGP_AJ_G0028530.1 mouse_genomes_project 4 105899202 105969284 - Osbpl9 protein_coding processed_transcript MGP_AJ_T0066971.1 MGP_AJ_G0028530.1 mouse_genomes_project 4 105946001 106014922 - Osbpl9 protein_coding processed_transcript MGP_AJ_T0066972.1 MGP_AJ_G0028530.1 mouse_genomes_project 4 105984809 106014920 - Osbpl9 protein_coding retained_intron MGP_AJ_T0014436.1 MGP_AJ_G0012531.1 mouse_genomes_project 4 14736711 14736933 + processed_pseudogene processed_pseudogene MGP_AJ_T0067063.1 MGP_AJ_G0028545.1 mouse_genomes_project 4 108734840 108745704 + MGP_AJ_P0067063 Skint7 protein_coding protein_coding MGP_AJ_T0067064.1 MGP_AJ_G0028545.1 mouse_genomes_project 4 108734844 108748779 + MGP_AJ_P0067064 Skint7 protein_coding protein_coding MGP_AJ_T0067065.1 MGP_AJ_G0028545.1 mouse_genomes_project 4 108734844 108743820 + MGP_AJ_P0067065 Skint7 protein_coding protein_coding MGP_AJ_T0067066.1 MGP_AJ_G0028545.1 mouse_genomes_project 4 108744615 108747071 + Skint7 protein_coding retained_intron MGP_AJ_T0067806.1 MGP_AJ_G0028727.1 mouse_genomes_project 4 122664321 122672924 + MGP_AJ_P0067806 Mrps15 protein_coding protein_coding MGP_AJ_T0067807.1 MGP_AJ_G0028727.1 mouse_genomes_project 4 122664373 122669362 + Mrps15 protein_coding processed_transcript MGP_AJ_T0067808.1 MGP_AJ_G0028727.1 mouse_genomes_project 4 122664630 122667880 + Mrps15 protein_coding processed_transcript MGP_AJ_T0069459.1 MGP_AJ_G0029114.1 mouse_genomes_project 4 147565581 147584625 + MGP_AJ_P0069459 Gpr157 protein_coding protein_coding MGP_AJ_T0014467.1 MGP_AJ_G0012562.1 mouse_genomes_project 4 23576357 23576605 - processed_pseudogene processed_pseudogene MGP_AJ_T0065878.1 MGP_AJ_G0028279.1 mouse_genomes_project 4 54221310 54554979 + MGP_AJ_P0065878 protein_coding nonsense_mediated_decay MGP_AJ_T0065880.1 MGP_AJ_G0028279.1 mouse_genomes_project 4 54221461 54513963 + MGP_AJ_P0065880 protein_coding nonsense_mediated_decay MGP_AJ_T0065881.1 MGP_AJ_G0028279.1 mouse_genomes_project 4 54293577 54552715 + MGP_AJ_P0065881 protein_coding protein_coding MGP_AJ_T0065887.1 MGP_AJ_G0028279.1 mouse_genomes_project 4 54503525 54554981 + MGP_AJ_P0065887 protein_coding protein_coding MGP_AJ_T0007881.1 MGP_AJ_G0006441.1 mouse_genomes_project 4 78491553 78495939 + Gm11412 lincRNA lincRNA MGP_AJ_T0014410.1 MGP_AJ_G0012505.1 mouse_genomes_project 4 7935870 7936849 + processed_pseudogene processed_pseudogene MGP_AJ_T0014389.1 MGP_AJ_G0012484.1 mouse_genomes_project 4 1111737 1112253 - processed_pseudogene processed_pseudogene MGP_AJ_T0018075.1 MGP_AJ_G0015544.1 mouse_genomes_project 4 106448532 106454831 - 9630013D21Rik processed_transcript processed_transcript MGP_AJ_T0018076.1 MGP_AJ_G0015544.1 mouse_genomes_project 4 106449487 106454857 - 9630013D21Rik processed_transcript processed_transcript MGP_AJ_T0018077.1 MGP_AJ_G0015544.1 mouse_genomes_project 4 106449616 106451135 - 9630013D21Rik processed_transcript processed_transcript MGP_AJ_T0018078.1 MGP_AJ_G0015544.1 mouse_genomes_project 4 106449954 106454612 - 9630013D21Rik processed_transcript processed_transcript MGP_AJ_T0014585.1 MGP_AJ_G0012680.1 mouse_genomes_project 4 64292874 64293501 - processed_pseudogene processed_pseudogene MGP_AJ_T0004502.1 MGP_AJ_G0003912.1 mouse_genomes_project 4 104631339 104634288 - Lrp8os1 antisense antisense MGP_AJ_T0004503.1 MGP_AJ_G0003912.1 mouse_genomes_project 4 104631360 104634288 - Lrp8os1 antisense antisense MGP_AJ_T0004616.1 MGP_AJ_G0004001.1 mouse_genomes_project 4 152957692 152958475 + Gm27200 antisense antisense MGP_AJ_T0064697.1 MGP_AJ_G0028002.1 mouse_genomes_project 4 7385504 7410413 + MGP_AJ_P0064697 2610301B20Rik protein_coding protein_coding MGP_AJ_T0064698.1 MGP_AJ_G0028002.1 mouse_genomes_project 4 7385531 7404460 + 2610301B20Rik protein_coding processed_transcript MGP_AJ_T0064699.1 MGP_AJ_G0028002.1 mouse_genomes_project 4 7385571 7409072 + 2610301B20Rik protein_coding processed_transcript MGP_AJ_T0064700.1 MGP_AJ_G0028002.1 mouse_genomes_project 4 7385574 7410417 + MGP_AJ_P0064700 2610301B20Rik protein_coding protein_coding MGP_AJ_T0064701.1 MGP_AJ_G0028002.1 mouse_genomes_project 4 7389975 7402822 + 2610301B20Rik protein_coding processed_transcript MGP_AJ_T0069696.1 MGP_AJ_G0029156.1 mouse_genomes_project 4 151658335 151700549 - MGP_AJ_P0069696 Trp73 protein_coding protein_coding MGP_AJ_T0069697.1 MGP_AJ_G0029156.1 mouse_genomes_project 4 151660594 151700549 - MGP_AJ_P0069697 Trp73 protein_coding protein_coding MGP_AJ_T0069698.1 MGP_AJ_G0029156.1 mouse_genomes_project 4 151661071 151700543 - MGP_AJ_P0069698 Trp73 protein_coding nonsense_mediated_decay MGP_AJ_T0069699.1 MGP_AJ_G0029156.1 mouse_genomes_project 4 151661073 151708269 - MGP_AJ_P0069699 Trp73 protein_coding protein_coding MGP_AJ_T0069700.1 MGP_AJ_G0029156.1 mouse_genomes_project 4 151666277 151688696 - MGP_AJ_P0069700 Trp73 protein_coding protein_coding MGP_AJ_T0069701.1 MGP_AJ_G0029156.1 mouse_genomes_project 4 151669525 151719979 - MGP_AJ_P0069701 Trp73 protein_coding protein_coding MGP_AJ_T0101187.1 MGP_AJ_G0039153.1 mouse_genomes_project 4 4350486 4350618 + Gm23860 snoRNA snoRNA MGP_AJ_T0014578.1 MGP_AJ_G0012673.1 mouse_genomes_project 4 59700566 59701230 + processed_pseudogene processed_pseudogene MGP_AJ_T0067412.1 MGP_AJ_G0028620.1 mouse_genomes_project 4 114305949 114309339 - MGP_AJ_P0067412 Dph2 protein_coding protein_coding MGP_AJ_T0067413.1 MGP_AJ_G0028620.1 mouse_genomes_project 4 114306213 114309327 - Dph2 protein_coding retained_intron MGP_AJ_T0067414.1 MGP_AJ_G0028620.1 mouse_genomes_project 4 114306222 114309330 - MGP_AJ_P0067414 Dph2 protein_coding nonsense_mediated_decay MGP_AJ_T0067415.1 MGP_AJ_G0028620.1 mouse_genomes_project 4 114308384 114309293 - Dph2 protein_coding retained_intron MGP_AJ_T0010624.1 MGP_AJ_G0008746.1 mouse_genomes_project 4 128966188 128966284 + Gm25707 miRNA miRNA MGP_AJ_T0010572.1 MGP_AJ_G0008694.1 mouse_genomes_project 4 12493743 12493835 - Mir6400 miRNA miRNA MGP_AJ_T0070014.1 MGP_AJ_G0029213.1 mouse_genomes_project 4 153804422 153805823 - MGP_AJ_P0070014 Isg15 protein_coding protein_coding MGP_AJ_T0069363.1 MGP_AJ_G0029097.1 mouse_genomes_project 4 146401459 146542150 - MGP_AJ_P0069363 Pex14 protein_coding protein_coding MGP_AJ_T0069364.1 MGP_AJ_G0029097.1 mouse_genomes_project 4 146404161 146542090 - Pex14 protein_coding retained_intron MGP_AJ_T0069365.1 MGP_AJ_G0029097.1 mouse_genomes_project 4 146424911 146542089 - Pex14 protein_coding processed_transcript MGP_AJ_T0069366.1 MGP_AJ_G0029097.1 mouse_genomes_project 4 146425662 146542083 - MGP_AJ_P0069366 Pex14 protein_coding nonsense_mediated_decay MGP_AJ_T0069367.1 MGP_AJ_G0029097.1 mouse_genomes_project 4 146456923 146542102 - Pex14 protein_coding processed_transcript MGP_AJ_T0065690.1 MGP_AJ_G0028225.1 mouse_genomes_project 4 43863949 43968979 + MGP_AJ_P0065690 Col15a1 protein_coding protein_coding MGP_AJ_T0065691.1 MGP_AJ_G0028225.1 mouse_genomes_project 4 43863949 43968975 + MGP_AJ_P0065691 Col15a1 protein_coding protein_coding MGP_AJ_T0065692.1 MGP_AJ_G0028225.1 mouse_genomes_project 4 43889143 43901274 + Col15a1 protein_coding processed_transcript MGP_AJ_T0065693.1 MGP_AJ_G0028225.1 mouse_genomes_project 4 43914298 43917916 + Col15a1 protein_coding processed_transcript MGP_AJ_T0065694.1 MGP_AJ_G0028225.1 mouse_genomes_project 4 43914619 43918105 + Col15a1 protein_coding processed_transcript MGP_AJ_T0065695.1 MGP_AJ_G0028225.1 mouse_genomes_project 4 43943663 43948829 + MGP_AJ_P0065695 Col15a1 protein_coding protein_coding MGP_AJ_T0065696.1 MGP_AJ_G0028225.1 mouse_genomes_project 4 43943675 43968979 + MGP_AJ_P0065696 Col15a1 protein_coding protein_coding MGP_AJ_T0065697.1 MGP_AJ_G0028225.1 mouse_genomes_project 4 43943893 43954897 + MGP_AJ_P0065697 Col15a1 protein_coding protein_coding MGP_AJ_T0065698.1 MGP_AJ_G0028225.1 mouse_genomes_project 4 43959338 43968974 + MGP_AJ_P0065698 Col15a1 protein_coding protein_coding MGP_AJ_T0014799.1 MGP_AJ_G0012894.1 mouse_genomes_project 4 132694197 132694657 - processed_pseudogene processed_pseudogene MGP_AJ_T0007949.1 MGP_AJ_G0006496.1 mouse_genomes_project 4 120998826 121036421 - 1700057H15Rik lincRNA lincRNA MGP_AJ_T0007950.1 MGP_AJ_G0006496.1 mouse_genomes_project 4 120998826 121003110 - 1700057H15Rik lincRNA lincRNA MGP_AJ_T0007951.1 MGP_AJ_G0006496.1 mouse_genomes_project 4 121035027 121070844 - 1700057H15Rik lincRNA lincRNA MGP_AJ_T0007952.1 MGP_AJ_G0006496.1 mouse_genomes_project 4 121035360 121036411 - 1700057H15Rik lincRNA lincRNA MGP_AJ_T0070022.1 MGP_AJ_G0029219.1 mouse_genomes_project 4 153853592 153863429 - MGP_AJ_P0070022 Samd11 protein_coding protein_coding MGP_AJ_T0070023.1 MGP_AJ_G0029219.1 mouse_genomes_project 4 153854347 153862628 - MGP_AJ_P0070023 Samd11 protein_coding unknown_likely_coding MGP_AJ_T0098679.1 MGP_AJ_G0036663.1 mouse_genomes_project 4 55586909 55586994 + Gm26400 rRNA rRNA MGP_AJ_T0069107.1 MGP_AJ_G0029013.1 mouse_genomes_project 4 138400668 138440641 - MGP_AJ_P0069107 Plekhm2 protein_coding protein_coding MGP_AJ_T0069108.1 MGP_AJ_G0029013.1 mouse_genomes_project 4 138400668 138441422 - MGP_AJ_P0069108 Plekhm2 protein_coding protein_coding MGP_AJ_T0069109.1 MGP_AJ_G0029013.1 mouse_genomes_project 4 138403266 138404471 - Plekhm2 protein_coding retained_intron MGP_AJ_T0069110.1 MGP_AJ_G0029013.1 mouse_genomes_project 4 138405381 138405982 - Plekhm2 protein_coding retained_intron MGP_AJ_T0069111.1 MGP_AJ_G0029013.1 mouse_genomes_project 4 138407401 138417553 - Plekhm2 protein_coding retained_intron MGP_AJ_T0069112.1 MGP_AJ_G0029013.1 mouse_genomes_project 4 138416674 138418120 - Plekhm2 protein_coding retained_intron MGP_AJ_T0007860.1 MGP_AJ_G0006422.1 mouse_genomes_project 4 52195874 52233792 + Gm12511 lincRNA lincRNA MGP_AJ_T0069182.1 MGP_AJ_G0029043.1 mouse_genomes_project 4 140662557 140674231 + MGP_AJ_P0069182 Gm13023 protein_coding protein_coding MGP_AJ_T0099917.1 MGP_AJ_G0037883.1 mouse_genomes_project 4 46177974 46178078 + Gm26424 snRNA snRNA MGP_AJ_T0014780.1 MGP_AJ_G0012875.1 mouse_genomes_project 4 128700060 128700532 - processed_pseudogene processed_pseudogene MGP_AJ_T0068528.1 MGP_AJ_G0028874.1 mouse_genomes_project 4 130780586 130792714 - MGP_AJ_P0068528 Gm7534 protein_coding protein_coding MGP_AJ_T0010568.1 MGP_AJ_G0008690.1 mouse_genomes_project 4 7359688 7359819 - Mir3471-1 miRNA miRNA MGP_AJ_T0011584.1 MGP_AJ_G0009706.1 mouse_genomes_project 4 120076086 120076192 + Gm23548 misc_RNA misc_RNA MGP_AJ_T0014700.1 MGP_AJ_G0012795.1 mouse_genomes_project 4 104491379 104491930 + processed_pseudogene processed_pseudogene MGP_AJ_T0014719.1 MGP_AJ_G0012814.1 mouse_genomes_project 4 111820849 111821174 - processed_pseudogene processed_pseudogene MGP_AJ_T0069951.1 MGP_AJ_G0029203.1 mouse_genomes_project 4 153511030 153526929 + MGP_AJ_P0069951 Acap3 protein_coding protein_coding MGP_AJ_T0069952.1 MGP_AJ_G0029203.1 mouse_genomes_project 4 153511083 153526930 + MGP_AJ_P0069952 Acap3 protein_coding protein_coding MGP_AJ_T0069953.1 MGP_AJ_G0029203.1 mouse_genomes_project 4 153511110 153519159 + Acap3 protein_coding processed_transcript MGP_AJ_T0069954.1 MGP_AJ_G0029203.1 mouse_genomes_project 4 153511480 153519301 + Acap3 protein_coding processed_transcript MGP_AJ_T0069955.1 MGP_AJ_G0029203.1 mouse_genomes_project 4 153511520 153526930 + Acap3 protein_coding processed_transcript MGP_AJ_T0069956.1 MGP_AJ_G0029203.1 mouse_genomes_project 4 153521274 153522377 + Acap3 protein_coding retained_intron MGP_AJ_T0069957.1 MGP_AJ_G0029203.1 mouse_genomes_project 4 153522265 153524784 + Acap3 protein_coding retained_intron MGP_AJ_T0069958.1 MGP_AJ_G0029203.1 mouse_genomes_project 4 153522927 153525015 + Acap3 protein_coding processed_transcript MGP_AJ_T0069959.1 MGP_AJ_G0029203.1 mouse_genomes_project 4 153525032 153525591 + Acap3 protein_coding processed_transcript MGP_AJ_T0014476.1 MGP_AJ_G0012571.1 mouse_genomes_project 4 25067594 25067858 + processed_pseudogene processed_pseudogene MGP_AJ_T0014447.1 MGP_AJ_G0012542.1 mouse_genomes_project 4 18476872 18478300 - processed_pseudogene processed_pseudogene MGP_AJ_T0066132.1 MGP_AJ_G0028350.1 mouse_genomes_project 4 71030538 71195324 + MGP_AJ_P0066132 Kdm4c protein_coding protein_coding MGP_AJ_T0066133.1 MGP_AJ_G0028350.1 mouse_genomes_project 4 71039865 71195324 + MGP_AJ_P0066133 Kdm4c protein_coding protein_coding MGP_AJ_T0066134.1 MGP_AJ_G0028350.1 mouse_genomes_project 4 71050737 71120832 + Kdm4c protein_coding processed_transcript MGP_AJ_T0066135.1 MGP_AJ_G0028350.1 mouse_genomes_project 4 71050737 71123014 + MGP_AJ_P0066135 Kdm4c protein_coding protein_coding MGP_AJ_T0066136.1 MGP_AJ_G0028350.1 mouse_genomes_project 4 71050738 71061631 + Kdm4c protein_coding processed_transcript MGP_AJ_T0066137.1 MGP_AJ_G0028350.1 mouse_genomes_project 4 71050738 71057653 + Kdm4c protein_coding processed_transcript MGP_AJ_T0007955.1 MGP_AJ_G0006499.1 mouse_genomes_project 4 122501530 122535930 - 2610028E06Rik lincRNA lincRNA MGP_AJ_T0007956.1 MGP_AJ_G0006499.1 mouse_genomes_project 4 122501530 122512689 - 2610028E06Rik lincRNA lincRNA MGP_AJ_T0007957.1 MGP_AJ_G0006499.1 mouse_genomes_project 4 122501875 122536037 - 2610028E06Rik lincRNA lincRNA MGP_AJ_T0007958.1 MGP_AJ_G0006499.1 mouse_genomes_project 4 122504093 122530785 - 2610028E06Rik lincRNA lincRNA MGP_AJ_T0007959.1 MGP_AJ_G0006499.1 mouse_genomes_project 4 122532194 122536037 - 2610028E06Rik lincRNA lincRNA MGP_AJ_T0014807.1 MGP_AJ_G0012902.1 mouse_genomes_project 4 135862898 135863507 + processed_pseudogene processed_pseudogene MGP_AJ_T0066009.1 MGP_AJ_G0028317.1 mouse_genomes_project 4 59265345 59278777 - Alad protein_coding processed_transcript MGP_AJ_T0066010.1 MGP_AJ_G0028317.1 mouse_genomes_project 4 59265345 59278814 - MGP_AJ_P0066010 Alad protein_coding protein_coding MGP_AJ_T0066011.1 MGP_AJ_G0028317.1 mouse_genomes_project 4 59265345 59278790 - MGP_AJ_P0066011 Alad protein_coding protein_coding MGP_AJ_T0004450.1 MGP_AJ_G0003875.1 mouse_genomes_project 4 41632985 41641508 - Gm12679 antisense antisense MGP_AJ_T0010582.1 MGP_AJ_G0008704.1 mouse_genomes_project 4 37164507 37164586 + Mir207 miRNA miRNA MGP_AJ_T0001423.1 MGP_AJ_G0001345.1 mouse_genomes_project 4 128425006 128429616 + TEC TEC MGP_AJ_T0066343.1 MGP_AJ_G0028389.1 mouse_genomes_project 4 85456782 85457712 - MGP_AJ_P0066343 protein_coding protein_coding MGP_AJ_T0010583.1 MGP_AJ_G0008705.1 mouse_genomes_project 4 37437342 37437406 + Mir3094 miRNA miRNA MGP_AJ_T0065188.1 MGP_AJ_G0028126.1 mouse_genomes_project 4 38165630 38167132 - MGP_AJ_P0065188 Rpp25l protein_coding protein_coding MGP_AJ_T0066342.1 MGP_AJ_G0028388.1 mouse_genomes_project 4 85429509 85430328 - MGP_AJ_P0066342 Ifna13 protein_coding protein_coding MGP_AJ_T0067655.1 MGP_AJ_G0028686.1 mouse_genomes_project 4 119372040 119395054 + MGP_AJ_P0067655 Ppt1 protein_coding protein_coding MGP_AJ_T0067656.1 MGP_AJ_G0028686.1 mouse_genomes_project 4 119372044 119384895 + MGP_AJ_P0067656 Ppt1 protein_coding protein_coding MGP_AJ_T0067657.1 MGP_AJ_G0028686.1 mouse_genomes_project 4 119372048 119395151 + MGP_AJ_P0067657 Ppt1 protein_coding nonsense_mediated_decay MGP_AJ_T0067658.1 MGP_AJ_G0028686.1 mouse_genomes_project 4 119372052 119386184 + MGP_AJ_P0067658 Ppt1 protein_coding protein_coding MGP_AJ_T0066718.1 MGP_AJ_G0028489.1 mouse_genomes_project 4 103536174 103550621 + MGP_AJ_P0066718 Fam151a protein_coding protein_coding MGP_AJ_T0067227.1 MGP_AJ_G0028586.1 mouse_genomes_project 4 112910524 112942568 + MGP_AJ_P0067227 Ipp protein_coding protein_coding MGP_AJ_T0067228.1 MGP_AJ_G0028586.1 mouse_genomes_project 4 112910527 112942576 + MGP_AJ_P0067228 Ipp protein_coding protein_coding MGP_AJ_T0066501.1 MGP_AJ_G0028439.1 mouse_genomes_project 4 95682364 95694454 + MGP_AJ_P0066501 protein_coding protein_coding MGP_AJ_T0066502.1 MGP_AJ_G0028439.1 mouse_genomes_project 4 95682433 95694454 + MGP_AJ_P0066502 protein_coding protein_coding MGP_AJ_T0066503.1 MGP_AJ_G0028439.1 mouse_genomes_project 4 95682518 95686849 + MGP_AJ_P0066503 protein_coding protein_coding MGP_AJ_T0066504.1 MGP_AJ_G0028439.1 mouse_genomes_project 4 95686675 95689563 + MGP_AJ_P0066504 protein_coding protein_coding MGP_AJ_T0066505.1 MGP_AJ_G0028439.1 mouse_genomes_project 4 95689554 95694453 + MGP_AJ_P0066505 protein_coding unknown_likely_coding MGP_AJ_T0068427.1 MGP_AJ_G0028853.1 mouse_genomes_project 4 130057451 130065306 + MGP_AJ_P0068427 Fam46b protein_coding protein_coding MGP_AJ_T0014424.1 MGP_AJ_G0012519.1 mouse_genomes_project 4 12178027 12178351 + processed_pseudogene processed_pseudogene MGP_AJ_T0098683.1 MGP_AJ_G0036667.1 mouse_genomes_project 4 108203377 108203493 - n-R5s191 rRNA rRNA MGP_AJ_T0014598.1 MGP_AJ_G0012693.1 mouse_genomes_project 4 70208895 70210070 - processed_pseudogene processed_pseudogene MGP_AJ_T0014593.1 MGP_AJ_G0012688.1 mouse_genomes_project 4 68470384 68472078 + processed_pseudogene processed_pseudogene MGP_AJ_T0066909.1 MGP_AJ_G0028519.1 mouse_genomes_project 4 105372444 105376283 - Prpf38a protein_coding processed_transcript MGP_AJ_T0066910.1 MGP_AJ_G0028519.1 mouse_genomes_project 4 105374142 105388842 - MGP_AJ_P0066910 Prpf38a protein_coding protein_coding MGP_AJ_T0066911.1 MGP_AJ_G0028519.1 mouse_genomes_project 4 105374145 105382658 - Prpf38a protein_coding processed_transcript MGP_AJ_T0014453.1 MGP_AJ_G0012548.1 mouse_genomes_project 4 20014745 20015660 - processed_pseudogene processed_pseudogene MGP_AJ_T0014496.1 MGP_AJ_G0012591.1 mouse_genomes_project 4 30812640 30813093 - processed_pseudogene processed_pseudogene MGP_AJ_T0007811.1 MGP_AJ_G0006379.1 mouse_genomes_project 4 8552156 8561726 - Gm11840 lincRNA lincRNA MGP_AJ_T0068372.1 MGP_AJ_G0028841.1 mouse_genomes_project 4 129424783 129456529 - MGP_AJ_P0068372 Stx12 protein_coding protein_coding MGP_AJ_T0068373.1 MGP_AJ_G0028841.1 mouse_genomes_project 4 129428328 129434545 - Stx12 protein_coding processed_transcript MGP_AJ_T0067205.1 MGP_AJ_G0028582.1 mouse_genomes_project 4 112556539 112562271 - MGP_AJ_P0067205 Tspan1 protein_coding protein_coding MGP_AJ_T0067206.1 MGP_AJ_G0028582.1 mouse_genomes_project 4 112557978 112562272 - MGP_AJ_P0067206 Tspan1 protein_coding protein_coding MGP_AJ_T0067207.1 MGP_AJ_G0028582.1 mouse_genomes_project 4 112558002 112559504 - Tspan1 protein_coding retained_intron MGP_AJ_T0010595.1 MGP_AJ_G0008717.1 mouse_genomes_project 4 77726871 77726967 + Gm27452 miRNA miRNA MGP_AJ_T0004431.1 MGP_AJ_G0003859.1 mouse_genomes_project 4 16884625 16888738 + Gm11872 antisense antisense MGP_AJ_T0066363.1 MGP_AJ_G0028406.1 mouse_genomes_project 4 87013525 87020378 + MGP_AJ_P0066363 Zfp352 protein_coding protein_coding MGP_AJ_T0066364.1 MGP_AJ_G0028406.1 mouse_genomes_project 4 87018300 87019956 + MGP_AJ_P0066364 Zfp352 protein_coding protein_coding MGP_AJ_T0014456.1 MGP_AJ_G0012551.1 mouse_genomes_project 4 20901242 20902958 + processed_pseudogene processed_pseudogene MGP_AJ_T0065221.1 MGP_AJ_G0028132.1 mouse_genomes_project 4 38220542 38226475 + MGP_AJ_P0065221 protein_coding protein_coding MGP_AJ_T0065791.1 MGP_AJ_G0028255.1 mouse_genomes_project 4 49543068 49544030 - MGP_AJ_P0065791 Olfr272 protein_coding protein_coding MGP_AJ_T0065792.1 MGP_AJ_G0028255.1 mouse_genomes_project 4 49543068 49552258 - MGP_AJ_P0065792 Olfr272 protein_coding protein_coding MGP_AJ_T0066698.1 MGP_AJ_G0028486.1 mouse_genomes_project 4 103456222 103458693 + MGP_AJ_P0066698 Pars2 protein_coding protein_coding MGP_AJ_T0066699.1 MGP_AJ_G0028486.1 mouse_genomes_project 4 103456251 103460434 + MGP_AJ_P0066699 Pars2 protein_coding protein_coding MGP_AJ_T0066700.1 MGP_AJ_G0028486.1 mouse_genomes_project 4 103456256 103458020 + Pars2 protein_coding processed_transcript MGP_AJ_T0066701.1 MGP_AJ_G0028486.1 mouse_genomes_project 4 103456259 103460436 + MGP_AJ_P0066701 Pars2 protein_coding protein_coding MGP_AJ_T0067185.1 MGP_AJ_G0028579.1 mouse_genomes_project 4 112487592 112493387 - Rad54l protein_coding processed_transcript MGP_AJ_T0067186.1 MGP_AJ_G0028579.1 mouse_genomes_project 4 112490244 112516817 - MGP_AJ_P0067186 Rad54l protein_coding protein_coding MGP_AJ_T0067187.1 MGP_AJ_G0028579.1 mouse_genomes_project 4 112490303 112516791 - MGP_AJ_P0067187 Rad54l protein_coding protein_coding MGP_AJ_T0067188.1 MGP_AJ_G0028579.1 mouse_genomes_project 4 112503200 112516114 - Rad54l protein_coding processed_transcript MGP_AJ_T0067189.1 MGP_AJ_G0028579.1 mouse_genomes_project 4 112504499 112505995 - Rad54l protein_coding processed_transcript MGP_AJ_T0067190.1 MGP_AJ_G0028579.1 mouse_genomes_project 4 112510962 112516822 - Rad54l protein_coding processed_transcript MGP_AJ_T0101193.1 MGP_AJ_G0039159.1 mouse_genomes_project 4 21957373 21957498 - Gm25975 snoRNA snoRNA MGP_AJ_T0066184.1 MGP_AJ_G0028359.1 mouse_genomes_project 4 79027749 79238373 - MGP_AJ_P0066184 Nfib protein_coding protein_coding MGP_AJ_T0066185.1 MGP_AJ_G0028359.1 mouse_genomes_project 4 79057682 79238923 - Nfib protein_coding retained_intron MGP_AJ_T0066186.1 MGP_AJ_G0028359.1 mouse_genomes_project 4 79059451 79238923 - Nfib protein_coding retained_intron MGP_AJ_T0066187.1 MGP_AJ_G0028359.1 mouse_genomes_project 4 79084769 79239377 - Nfib protein_coding retained_intron MGP_AJ_T0066188.1 MGP_AJ_G0028359.1 mouse_genomes_project 4 79229589 79239392 - Nfib protein_coding retained_intron MGP_AJ_T0066189.1 MGP_AJ_G0028359.1 mouse_genomes_project 4 79231926 79439655 - MGP_AJ_P0066189 Nfib protein_coding protein_coding MGP_AJ_T0066190.1 MGP_AJ_G0028359.1 mouse_genomes_project 4 79232149 79232922 - Nfib protein_coding processed_transcript MGP_AJ_T0067692.1 MGP_AJ_G0028697.1 mouse_genomes_project 4 119795968 119812407 + MGP_AJ_P0067692 Heyl protein_coding protein_coding MGP_AJ_T0067693.1 MGP_AJ_G0028697.1 mouse_genomes_project 4 119796265 119803071 + Heyl protein_coding processed_transcript MGP_AJ_T0067694.1 MGP_AJ_G0028697.1 mouse_genomes_project 4 119802168 119808521 + Heyl protein_coding processed_transcript MGP_AJ_T0014785.1 MGP_AJ_G0012880.1 mouse_genomes_project 4 129456767 129458631 + processed_pseudogene processed_pseudogene MGP_AJ_T0014494.1 MGP_AJ_G0012589.1 mouse_genomes_project 4 29868298 29868697 - processed_pseudogene processed_pseudogene MGP_AJ_T0014690.1 MGP_AJ_G0012785.1 mouse_genomes_project 4 101773780 101774048 - processed_pseudogene processed_pseudogene MGP_AJ_T0068582.1 MGP_AJ_G0028888.1 mouse_genomes_project 4 131114066 131127468 + MGP_AJ_P0068582 Aunip protein_coding protein_coding MGP_AJ_T0102597.1 MGP_AJ_G0040339.1 mouse_genomes_project 4 92951133 92973683 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0007836.1 MGP_AJ_G0006403.1 mouse_genomes_project 4 37161744 37163989 - Gm6297 lincRNA lincRNA MGP_AJ_T0066623.1 MGP_AJ_G0028465.1 mouse_genomes_project 4 99781032 99804836 + MGP_AJ_P0066623 Tctex1d1 protein_coding protein_coding MGP_AJ_T0066624.1 MGP_AJ_G0028465.1 mouse_genomes_project 4 99787119 99805066 + MGP_AJ_P0066624 Tctex1d1 protein_coding protein_coding MGP_AJ_T0066625.1 MGP_AJ_G0028465.1 mouse_genomes_project 4 99789342 99806087 + MGP_AJ_P0066625 Tctex1d1 protein_coding protein_coding MGP_AJ_T0066626.1 MGP_AJ_G0028465.1 mouse_genomes_project 4 99792576 99793643 + Tctex1d1 protein_coding processed_transcript MGP_AJ_T0004524.1 MGP_AJ_G0003930.1 mouse_genomes_project 4 115706041 115710434 - Gm12927 antisense antisense MGP_AJ_T0007839.1 MGP_AJ_G0006406.1 mouse_genomes_project 4 39686836 39693807 + Gm26881 lincRNA lincRNA MGP_AJ_T0068968.1 MGP_AJ_G0028979.1 mouse_genomes_project 4 136325677 136385847 + MGP_AJ_P0068968 Gm21969 protein_coding nonsense_mediated_decay MGP_AJ_T0069837.1 MGP_AJ_G0029180.1 mouse_genomes_project 4 153110273 153179036 + MGP_AJ_P0069837 Gnb1 protein_coding protein_coding MGP_AJ_T0069838.1 MGP_AJ_G0029180.1 mouse_genomes_project 4 153110276 153179036 + MGP_AJ_P0069838 Gnb1 protein_coding protein_coding MGP_AJ_T0069839.1 MGP_AJ_G0029180.1 mouse_genomes_project 4 153110282 153179036 + MGP_AJ_P0069839 Gnb1 protein_coding protein_coding MGP_AJ_T0069840.1 MGP_AJ_G0029180.1 mouse_genomes_project 4 153111823 153162943 + MGP_AJ_P0069840 Gnb1 protein_coding protein_coding MGP_AJ_T0069841.1 MGP_AJ_G0029180.1 mouse_genomes_project 4 153134324 153179034 + MGP_AJ_P0069841 Gnb1 protein_coding protein_coding MGP_AJ_T0069842.1 MGP_AJ_G0029180.1 mouse_genomes_project 4 153141093 153174906 + MGP_AJ_P0069842 Gnb1 protein_coding protein_coding MGP_AJ_T0069843.1 MGP_AJ_G0029180.1 mouse_genomes_project 4 153141267 153160431 + Gnb1 protein_coding retained_intron MGP_AJ_T0069844.1 MGP_AJ_G0029180.1 mouse_genomes_project 4 153162783 153174975 + Gnb1 protein_coding retained_intron MGP_AJ_T0069845.1 MGP_AJ_G0029180.1 mouse_genomes_project 4 153172993 153177423 + Gnb1 protein_coding retained_intron MGP_AJ_T0069999.1 MGP_AJ_G0029211.1 mouse_genomes_project 4 153722498 153739791 + MGP_AJ_P0069999 9430015G10Rik protein_coding protein_coding MGP_AJ_T0070000.1 MGP_AJ_G0029211.1 mouse_genomes_project 4 153722501 153739791 + 9430015G10Rik protein_coding processed_transcript MGP_AJ_T0070001.1 MGP_AJ_G0029211.1 mouse_genomes_project 4 153722514 153739789 + MGP_AJ_P0070001 9430015G10Rik protein_coding protein_coding MGP_AJ_T0070002.1 MGP_AJ_G0029211.1 mouse_genomes_project 4 153722515 153738745 + MGP_AJ_P0070002 9430015G10Rik protein_coding protein_coding MGP_AJ_T0070003.1 MGP_AJ_G0029211.1 mouse_genomes_project 4 153722535 153734703 + 9430015G10Rik protein_coding processed_transcript MGP_AJ_T0070004.1 MGP_AJ_G0029211.1 mouse_genomes_project 4 153722546 153734937 + 9430015G10Rik protein_coding processed_transcript MGP_AJ_T0070005.1 MGP_AJ_G0029211.1 mouse_genomes_project 4 153722555 153729095 + 9430015G10Rik protein_coding processed_transcript MGP_AJ_T0070006.1 MGP_AJ_G0029211.1 mouse_genomes_project 4 153726410 153732042 + 9430015G10Rik protein_coding processed_transcript MGP_AJ_T0014387.1 MGP_AJ_G0012482.1 mouse_genomes_project 4 214960 215560 - processed_pseudogene processed_pseudogene MGP_AJ_T0069002.1 MGP_AJ_G0028989.1 mouse_genomes_project 4 137534015 137559136 - MGP_AJ_P0069002 Padi3 protein_coding protein_coding MGP_AJ_T0069003.1 MGP_AJ_G0028989.1 mouse_genomes_project 4 137534019 137552641 - MGP_AJ_P0069003 Padi3 protein_coding protein_coding MGP_AJ_T0068782.1 MGP_AJ_G0028938.1 mouse_genomes_project 4 133986367 134025106 - MGP_AJ_P0068782 Cdc42 protein_coding protein_coding MGP_AJ_T0068783.1 MGP_AJ_G0028938.1 mouse_genomes_project 4 133988433 134025085 - MGP_AJ_P0068783 Cdc42 protein_coding protein_coding MGP_AJ_T0067371.1 MGP_AJ_G0028613.1 mouse_genomes_project 4 114098941 114106514 - Dmap1 protein_coding processed_transcript MGP_AJ_T0067372.1 MGP_AJ_G0028613.1 mouse_genomes_project 4 114098941 114106534 - MGP_AJ_P0067372 Dmap1 protein_coding protein_coding MGP_AJ_T0067373.1 MGP_AJ_G0028613.1 mouse_genomes_project 4 114098946 114106244 - Dmap1 protein_coding processed_transcript MGP_AJ_T0067374.1 MGP_AJ_G0028613.1 mouse_genomes_project 4 114105180 114106482 - Dmap1 protein_coding processed_transcript MGP_AJ_T0067375.1 MGP_AJ_G0028613.1 mouse_genomes_project 4 114105562 114106472 - Dmap1 protein_coding processed_transcript MGP_AJ_T0067376.1 MGP_AJ_G0028613.1 mouse_genomes_project 4 114105847 114106532 - Dmap1 protein_coding processed_transcript MGP_AJ_T0004556.1 MGP_AJ_G0003955.1 mouse_genomes_project 4 132621825 132629567 + Gm13008 antisense antisense MGP_AJ_T0068891.1 MGP_AJ_G0028960.1 mouse_genomes_project 4 135432915 135454256 + MGP_AJ_P0068891 Pla2g2c protein_coding protein_coding MGP_AJ_T0068892.1 MGP_AJ_G0028960.1 mouse_genomes_project 4 135433448 135451818 + MGP_AJ_P0068892 Pla2g2c protein_coding protein_coding MGP_AJ_T0068893.1 MGP_AJ_G0028960.1 mouse_genomes_project 4 135433448 135452699 + MGP_AJ_P0068893 Pla2g2c protein_coding protein_coding MGP_AJ_T0101237.1 MGP_AJ_G0039203.1 mouse_genomes_project 4 99539333 99539461 + Gm24869 snoRNA snoRNA MGP_AJ_T0101266.1 MGP_AJ_G0039232.1 mouse_genomes_project 4 130756656 130756744 - Gm27619 snoRNA snoRNA MGP_AJ_T0068607.1 MGP_AJ_G0028896.1 mouse_genomes_project 4 131532641 131536712 + Rsrp1 protein_coding retained_intron MGP_AJ_T0068608.1 MGP_AJ_G0028896.1 mouse_genomes_project 4 131532641 131536712 + MGP_AJ_P0068608 Rsrp1 protein_coding protein_coding MGP_AJ_T0068609.1 MGP_AJ_G0028896.1 mouse_genomes_project 4 131532642 131534470 + Rsrp1 protein_coding processed_transcript MGP_AJ_T0068610.1 MGP_AJ_G0028896.1 mouse_genomes_project 4 131532675 131534380 + Rsrp1 protein_coding processed_transcript MGP_AJ_T0068611.1 MGP_AJ_G0028896.1 mouse_genomes_project 4 131532694 131536413 + Rsrp1 protein_coding processed_transcript MGP_AJ_T0068612.1 MGP_AJ_G0028896.1 mouse_genomes_project 4 131533509 131536413 + Rsrp1 protein_coding processed_transcript MGP_AJ_T0068613.1 MGP_AJ_G0028896.1 mouse_genomes_project 4 131533759 131534402 + Rsrp1 protein_coding processed_transcript MGP_AJ_T0068614.1 MGP_AJ_G0028896.1 mouse_genomes_project 4 131534492 131535994 + Rsrp1 protein_coding processed_transcript MGP_AJ_T0065222.1 MGP_AJ_G0028133.1 mouse_genomes_project 4 38220575 38222550 + protein_coding retained_intron MGP_AJ_T0065223.1 MGP_AJ_G0028133.1 mouse_genomes_project 4 38220577 38225048 + protein_coding retained_intron MGP_AJ_T0065224.1 MGP_AJ_G0028133.1 mouse_genomes_project 4 38224786 38226396 + protein_coding retained_intron MGP_AJ_T0065226.1 MGP_AJ_G0028133.1 mouse_genomes_project 4 38224921 38225456 + protein_coding retained_intron MGP_AJ_T0065227.1 MGP_AJ_G0028133.1 mouse_genomes_project 4 38225435 38226471 + protein_coding retained_intron MGP_AJ_T0066493.1 MGP_AJ_G0028436.1 mouse_genomes_project 4 95464106 95470949 + MGP_AJ_P0066493 L1td1 protein_coding protein_coding MGP_AJ_T0066494.1 MGP_AJ_G0028436.1 mouse_genomes_project 4 95464120 95475746 + MGP_AJ_P0066494 L1td1 protein_coding protein_coding MGP_AJ_T0066495.1 MGP_AJ_G0028436.1 mouse_genomes_project 4 95464165 95470865 + MGP_AJ_P0066495 L1td1 protein_coding protein_coding MGP_AJ_T0066496.1 MGP_AJ_G0028436.1 mouse_genomes_project 4 95470507 95475382 + MGP_AJ_P0066496 L1td1 protein_coding protein_coding MGP_AJ_T0067939.1 MGP_AJ_G0028754.1 mouse_genomes_project 4 123902178 123906196 + MGP_AJ_P0067939 Smim12 protein_coding protein_coding MGP_AJ_T0067614.1 MGP_AJ_G0028671.1 mouse_genomes_project 4 117057334 117081823 + MGP_AJ_P0067614 Gm8439 protein_coding protein_coding MGP_AJ_T0069177.1 MGP_AJ_G0029040.1 mouse_genomes_project 4 140662482 140674232 + MGP_AJ_P0069177 protein_coding protein_coding MGP_AJ_T0065638.1 MGP_AJ_G0028211.1 mouse_genomes_project 4 42787456 42811622 - MGP_AJ_P0065638 Tstd2 protein_coding protein_coding MGP_AJ_T0065639.1 MGP_AJ_G0028211.1 mouse_genomes_project 4 42788438 42811585 - MGP_AJ_P0065639 Tstd2 protein_coding protein_coding MGP_AJ_T0065640.1 MGP_AJ_G0028211.1 mouse_genomes_project 4 42796115 42811560 - Tstd2 protein_coding retained_intron MGP_AJ_T0065641.1 MGP_AJ_G0028211.1 mouse_genomes_project 4 42801418 42804060 - Tstd2 protein_coding retained_intron MGP_AJ_T0065642.1 MGP_AJ_G0028211.1 mouse_genomes_project 4 42804070 42811841 - MGP_AJ_P0065642 Tstd2 protein_coding protein_coding MGP_AJ_T0065643.1 MGP_AJ_G0028211.1 mouse_genomes_project 4 42804133 42811556 - MGP_AJ_P0065643 Tstd2 protein_coding protein_coding MGP_AJ_T0065644.1 MGP_AJ_G0028211.1 mouse_genomes_project 4 42804282 42808930 - MGP_AJ_P0065644 Tstd2 protein_coding protein_coding MGP_AJ_T0065645.1 MGP_AJ_G0028211.1 mouse_genomes_project 4 42808653 42811602 - MGP_AJ_P0065645 Tstd2 protein_coding protein_coding MGP_AJ_T0004457.1 MGP_AJ_G0003880.1 mouse_genomes_project 4 49053560 49062108 - Smc2os antisense antisense MGP_AJ_T0102619.1 MGP_AJ_G0040361.1 mouse_genomes_project 4 140241266 140242336 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0066161.1 MGP_AJ_G0028354.1 mouse_genomes_project 4 76769482 76769983 - MGP_AJ_P0066161 mt-Nd6 protein_coding protein_coding MGP_AJ_T0064948.1 MGP_AJ_G0028067.1 mouse_genomes_project 4 28632008 28990537 + MGP_AJ_P0064948 Bach2 protein_coding protein_coding MGP_AJ_T0064949.1 MGP_AJ_G0028067.1 mouse_genomes_project 4 28632154 28985597 + MGP_AJ_P0064949 Bach2 protein_coding protein_coding MGP_AJ_T0064950.1 MGP_AJ_G0028067.1 mouse_genomes_project 4 28632281 28906066 + Bach2 protein_coding processed_transcript MGP_AJ_T0064951.1 MGP_AJ_G0028067.1 mouse_genomes_project 4 28640971 28712757 + Bach2 protein_coding processed_transcript MGP_AJ_T0064952.1 MGP_AJ_G0028067.1 mouse_genomes_project 4 28812142 28990541 + MGP_AJ_P0064952 Bach2 protein_coding protein_coding MGP_AJ_T0064953.1 MGP_AJ_G0028067.1 mouse_genomes_project 4 28905934 28907056 + Bach2 protein_coding processed_transcript MGP_AJ_T0064954.1 MGP_AJ_G0028067.1 mouse_genomes_project 4 28979473 28984236 + Bach2 protein_coding processed_transcript MGP_AJ_T0101218.1 MGP_AJ_G0039184.1 mouse_genomes_project 4 53557485 53557611 + Gm22300 snoRNA snoRNA MGP_AJ_T0101260.1 MGP_AJ_G0039226.1 mouse_genomes_project 4 128865362 128865498 + Snora16a snoRNA snoRNA MGP_AJ_T0069201.1 MGP_AJ_G0029054.1 mouse_genomes_project 4 141426468 141445504 + MGP_AJ_P0069201 protein_coding protein_coding MGP_AJ_T0014460.1 MGP_AJ_G0012555.1 mouse_genomes_project 4 21993182 21997117 + processed_pseudogene processed_pseudogene MGP_AJ_T0101192.1 MGP_AJ_G0039158.1 mouse_genomes_project 4 18887143 18887276 + Gm24607 snoRNA snoRNA MGP_AJ_T0010642.1 MGP_AJ_G0008764.1 mouse_genomes_project 4 137434566 137434662 + Gm23045 miRNA miRNA MGP_AJ_T0014656.1 MGP_AJ_G0012751.1 mouse_genomes_project 4 90045029 90045905 - processed_pseudogene processed_pseudogene MGP_AJ_T0014683.1 MGP_AJ_G0012778.1 mouse_genomes_project 4 98607198 98607793 + processed_pseudogene processed_pseudogene MGP_AJ_T0068319.1 MGP_AJ_G0028829.1 mouse_genomes_project 4 128912436 128980223 - MGP_AJ_P0068319 Phactr4 protein_coding protein_coding MGP_AJ_T0068320.1 MGP_AJ_G0028829.1 mouse_genomes_project 4 128912443 128980180 - MGP_AJ_P0068320 Phactr4 protein_coding protein_coding MGP_AJ_T0068321.1 MGP_AJ_G0028829.1 mouse_genomes_project 4 128914775 128956090 - MGP_AJ_P0068321 Phactr4 protein_coding protein_coding MGP_AJ_T0068322.1 MGP_AJ_G0028829.1 mouse_genomes_project 4 128917195 128927537 - Phactr4 protein_coding processed_transcript MGP_AJ_T0068323.1 MGP_AJ_G0028829.1 mouse_genomes_project 4 128927956 128980175 - MGP_AJ_P0068323 Phactr4 protein_coding protein_coding MGP_AJ_T0068324.1 MGP_AJ_G0028829.1 mouse_genomes_project 4 128934590 128956078 - MGP_AJ_P0068324 Phactr4 protein_coding protein_coding MGP_AJ_T0065979.1 MGP_AJ_G0028309.1 mouse_genomes_project 4 59059032 59089262 - Fkbp15 protein_coding processed_transcript MGP_AJ_T0065980.1 MGP_AJ_G0028309.1 mouse_genomes_project 4 59059032 59118712 - MGP_AJ_P0065980 Fkbp15 protein_coding protein_coding MGP_AJ_T0065981.1 MGP_AJ_G0028309.1 mouse_genomes_project 4 59068239 59118790 - MGP_AJ_P0065981 Fkbp15 protein_coding protein_coding MGP_AJ_T0065982.1 MGP_AJ_G0028309.1 mouse_genomes_project 4 59075593 59118736 - MGP_AJ_P0065982 Fkbp15 protein_coding protein_coding MGP_AJ_T0065983.1 MGP_AJ_G0028309.1 mouse_genomes_project 4 59077609 59118776 - MGP_AJ_P0065983 Fkbp15 protein_coding protein_coding MGP_AJ_T0065984.1 MGP_AJ_G0028309.1 mouse_genomes_project 4 59101863 59118711 - Fkbp15 protein_coding processed_transcript MGP_AJ_T0014779.1 MGP_AJ_G0012874.1 mouse_genomes_project 4 128698466 128698937 - processed_pseudogene processed_pseudogene MGP_AJ_T0067616.1 MGP_AJ_G0028673.1 mouse_genomes_project 4 117173286 117224400 - MGP_AJ_P0067616 Kcnq4 protein_coding protein_coding MGP_AJ_T0067617.1 MGP_AJ_G0028673.1 mouse_genomes_project 4 117192385 117225764 - Kcnq4 protein_coding processed_transcript MGP_AJ_T0014462.1 MGP_AJ_G0012557.1 mouse_genomes_project 4 22288202 22288587 - processed_pseudogene processed_pseudogene MGP_AJ_T0069407.1 MGP_AJ_G0029104.1 mouse_genomes_project 4 146900289 146906990 - MGP_AJ_P0069407 Rbp7 protein_coding protein_coding MGP_AJ_T0069408.1 MGP_AJ_G0029104.1 mouse_genomes_project 4 146900305 146906982 - Rbp7 protein_coding processed_transcript MGP_AJ_T0065053.1 MGP_AJ_G0028093.1 mouse_genomes_project 4 31379214 31582830 - MGP_AJ_P0065053 Mob3b protein_coding protein_coding MGP_AJ_T0065054.1 MGP_AJ_G0028093.1 mouse_genomes_project 4 31503404 31582830 - Mob3b protein_coding processed_transcript MGP_AJ_T0065799.1 MGP_AJ_G0028258.1 mouse_genomes_project 4 49647221 49657727 + MGP_AJ_P0065799 Nipsnap3b protein_coding protein_coding MGP_AJ_T0065800.1 MGP_AJ_G0028258.1 mouse_genomes_project 4 49647291 49657243 + MGP_AJ_P0065800 Nipsnap3b protein_coding protein_coding MGP_AJ_T0065801.1 MGP_AJ_G0028258.1 mouse_genomes_project 4 49656642 49657172 + Nipsnap3b protein_coding processed_transcript MGP_AJ_T0014616.1 MGP_AJ_G0012711.1 mouse_genomes_project 4 73699887 73700232 + processed_pseudogene processed_pseudogene MGP_AJ_T0010589.1 MGP_AJ_G0008711.1 mouse_genomes_project 4 44888242 44888339 - Mir1958 miRNA miRNA MGP_AJ_T0014543.1 MGP_AJ_G0012638.1 mouse_genomes_project 4 48531710 48532949 + processed_pseudogene processed_pseudogene MGP_AJ_T0069859.1 MGP_AJ_G0029184.1 mouse_genomes_project 4 153246072 153251404 + Cdk11b protein_coding processed_transcript MGP_AJ_T0069860.1 MGP_AJ_G0029184.1 mouse_genomes_project 4 153246087 153271728 + MGP_AJ_P0069860 Cdk11b protein_coding protein_coding MGP_AJ_T0069861.1 MGP_AJ_G0029184.1 mouse_genomes_project 4 153246098 153246915 + Cdk11b protein_coding processed_transcript MGP_AJ_T0069862.1 MGP_AJ_G0029184.1 mouse_genomes_project 4 153246101 153271728 + MGP_AJ_P0069862 Cdk11b protein_coding protein_coding MGP_AJ_T0069863.1 MGP_AJ_G0029184.1 mouse_genomes_project 4 153246128 153271728 + MGP_AJ_P0069863 Cdk11b protein_coding protein_coding MGP_AJ_T0069864.1 MGP_AJ_G0029184.1 mouse_genomes_project 4 153255233 153260889 + Cdk11b protein_coding processed_transcript MGP_AJ_T0069865.1 MGP_AJ_G0029184.1 mouse_genomes_project 4 153268992 153270195 + Cdk11b protein_coding processed_transcript MGP_AJ_T0069866.1 MGP_AJ_G0029184.1 mouse_genomes_project 4 153269157 153270082 + Cdk11b protein_coding processed_transcript MGP_AJ_T0004498.1 MGP_AJ_G0003911.1 mouse_genomes_project 4 104609502 104626473 - Lrp8os2 antisense antisense MGP_AJ_T0004499.1 MGP_AJ_G0003911.1 mouse_genomes_project 4 104609502 104614418 - Lrp8os2 antisense antisense MGP_AJ_T0004500.1 MGP_AJ_G0003911.1 mouse_genomes_project 4 104611457 104626425 - Lrp8os2 antisense antisense MGP_AJ_T0004501.1 MGP_AJ_G0003911.1 mouse_genomes_project 4 104614277 104626461 - Lrp8os2 antisense antisense MGP_AJ_T0004490.1 MGP_AJ_G0003903.1 mouse_genomes_project 4 97273607 97278162 - Ube2uos antisense antisense MGP_AJ_T0068549.1 MGP_AJ_G0028880.1 mouse_genomes_project 4 130842971 130845965 - MGP_AJ_P0068549 Grrp1 protein_coding protein_coding MGP_AJ_T0068550.1 MGP_AJ_G0028880.1 mouse_genomes_project 4 130843567 130844881 - Grrp1 protein_coding processed_transcript MGP_AJ_T0065148.1 MGP_AJ_G0028116.1 mouse_genomes_project 4 37738721 37762254 - MGP_AJ_P0065148 Dcaf12 protein_coding protein_coding MGP_AJ_T0069171.1 MGP_AJ_G0029035.1 mouse_genomes_project 4 140492514 140495342 + MGP_AJ_P0069171 protein_coding protein_coding MGP_AJ_T0014431.1 MGP_AJ_G0012526.1 mouse_genomes_project 4 13266279 13266938 + processed_pseudogene processed_pseudogene MGP_AJ_T0014685.1 MGP_AJ_G0012780.1 mouse_genomes_project 4 98824060 98827894 - processed_pseudogene processed_pseudogene MGP_AJ_T0066160.1 MGP_AJ_G0028353.1 mouse_genomes_project 4 76768416 76768893 + MGP_AJ_P0066160 protein_coding protein_coding MGP_AJ_T0069172.1 MGP_AJ_G0029036.1 mouse_genomes_project 4 140568246 140574431 - MGP_AJ_P0069172 Gm13089 protein_coding protein_coding MGP_AJ_T0007968.1 MGP_AJ_G0006507.1 mouse_genomes_project 4 125808738 125810558 + Gm15906 lincRNA lincRNA MGP_AJ_T0099954.1 MGP_AJ_G0037920.1 mouse_genomes_project 4 117379354 117379458 + Gm24678 snRNA snRNA MGP_AJ_T0069307.1 MGP_AJ_G0029089.1 mouse_genomes_project 4 145879738 145886252 + Mtor protein_coding retained_intron MGP_AJ_T0069308.1 MGP_AJ_G0029089.1 mouse_genomes_project 4 145879738 145991499 + MGP_AJ_P0069308 Mtor protein_coding protein_coding MGP_AJ_T0069309.1 MGP_AJ_G0029089.1 mouse_genomes_project 4 145879752 145886256 + MGP_AJ_P0069309 Mtor protein_coding protein_coding MGP_AJ_T0069311.1 MGP_AJ_G0029089.1 mouse_genomes_project 4 145976141 145980625 + Mtor protein_coding retained_intron MGP_AJ_T0102608.1 MGP_AJ_G0040350.1 mouse_genomes_project 4 115092859 115093774 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0068711.1 MGP_AJ_G0028917.1 mouse_genomes_project 4 132621627 132640077 - MGP_AJ_P0068711 Tceb3 protein_coding protein_coding MGP_AJ_T0102606.1 MGP_AJ_G0040348.1 mouse_genomes_project 4 112042248 112043601 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0067338.1 MGP_AJ_G0028608.1 mouse_genomes_project 4 113569631 113594325 - MGP_AJ_P0067338 Kif2c protein_coding protein_coding MGP_AJ_T0067339.1 MGP_AJ_G0028608.1 mouse_genomes_project 4 113570123 113589568 - MGP_AJ_P0067339 Kif2c protein_coding protein_coding MGP_AJ_T0067340.1 MGP_AJ_G0028608.1 mouse_genomes_project 4 113575538 113576272 - Kif2c protein_coding retained_intron MGP_AJ_T0067341.1 MGP_AJ_G0028608.1 mouse_genomes_project 4 113584512 113594228 - Kif2c protein_coding retained_intron MGP_AJ_T0067342.1 MGP_AJ_G0028608.1 mouse_genomes_project 4 113584514 113594292 - Kif2c protein_coding processed_transcript MGP_AJ_T0067343.1 MGP_AJ_G0028608.1 mouse_genomes_project 4 113585257 113594278 - Kif2c protein_coding retained_intron MGP_AJ_T0067344.1 MGP_AJ_G0028608.1 mouse_genomes_project 4 113585792 113589550 - Kif2c protein_coding processed_transcript MGP_AJ_T0067345.1 MGP_AJ_G0028608.1 mouse_genomes_project 4 113585835 113589566 - MGP_AJ_P0067345 Kif2c protein_coding protein_coding MGP_AJ_T0069170.1 MGP_AJ_G0029034.1 mouse_genomes_project 4 140408182 140440867 + MGP_AJ_P0069170 protein_coding protein_coding MGP_AJ_T0067976.1 MGP_AJ_G0028766.1 mouse_genomes_project 4 125441387 125474356 - MGP_AJ_P0067976 Zfp362 protein_coding protein_coding MGP_AJ_T0067977.1 MGP_AJ_G0028766.1 mouse_genomes_project 4 125441403 125463195 - MGP_AJ_P0067977 Zfp362 protein_coding protein_coding MGP_AJ_T0067978.1 MGP_AJ_G0028766.1 mouse_genomes_project 4 125445383 125474356 - MGP_AJ_P0067978 Zfp362 protein_coding protein_coding MGP_AJ_T0067979.1 MGP_AJ_G0028766.1 mouse_genomes_project 4 125457625 125458397 - Zfp362 protein_coding processed_transcript MGP_AJ_T0014513.1 MGP_AJ_G0012608.1 mouse_genomes_project 4 36270024 36270943 + processed_pseudogene processed_pseudogene MGP_AJ_T0014419.1 MGP_AJ_G0012514.1 mouse_genomes_project 4 11318503 11318734 + processed_pseudogene processed_pseudogene MGP_AJ_T0065689.1 MGP_AJ_G0028224.1 mouse_genomes_project 4 43748530 43776721 + MGP_AJ_P0065689 Galnt12 protein_coding protein_coding MGP_AJ_T0065824.1 MGP_AJ_G0028265.1 mouse_genomes_project 4 51563542 51629982 + MGP_AJ_P0065824 protein_coding protein_coding MGP_AJ_T0065825.1 MGP_AJ_G0028265.1 mouse_genomes_project 4 51629070 51705564 + MGP_AJ_P0065825 protein_coding unknown_likely_coding MGP_AJ_T0065826.1 MGP_AJ_G0028265.1 mouse_genomes_project 4 51633048 51703348 + MGP_AJ_P0065826 protein_coding protein_coding MGP_AJ_T0065827.1 MGP_AJ_G0028265.1 mouse_genomes_project 4 51633162 51703320 + MGP_AJ_P0065827 protein_coding protein_coding MGP_AJ_T0069048.1 MGP_AJ_G0028999.1 mouse_genomes_project 4 137913050 137971454 + MGP_AJ_P0069048 Fbxo42 protein_coding protein_coding MGP_AJ_T0069049.1 MGP_AJ_G0028999.1 mouse_genomes_project 4 137913059 137962678 + Fbxo42 protein_coding processed_transcript MGP_AJ_T0068390.1 MGP_AJ_G0028845.1 mouse_genomes_project 4 129699218 129769076 + MGP_AJ_P0068390 Wasf2 protein_coding protein_coding MGP_AJ_T0068391.1 MGP_AJ_G0028845.1 mouse_genomes_project 4 129699253 129754451 + MGP_AJ_P0068391 Wasf2 protein_coding protein_coding MGP_AJ_T0068392.1 MGP_AJ_G0028845.1 mouse_genomes_project 4 129699342 129745906 + Wasf2 protein_coding processed_transcript MGP_AJ_T0068393.1 MGP_AJ_G0028845.1 mouse_genomes_project 4 129745346 129745958 + Wasf2 protein_coding processed_transcript MGP_AJ_T0068394.1 MGP_AJ_G0028845.1 mouse_genomes_project 4 129745716 129765824 + MGP_AJ_P0068394 Wasf2 protein_coding protein_coding MGP_AJ_T0068395.1 MGP_AJ_G0028845.1 mouse_genomes_project 4 129758403 129759948 + Wasf2 protein_coding processed_transcript MGP_AJ_T0004598.1 MGP_AJ_G0003986.1 mouse_genomes_project 4 146932543 146937409 + antisense antisense MGP_AJ_T0069460.1 MGP_AJ_G0029115.1 mouse_genomes_project 4 147598379 147625191 + MGP_AJ_P0069460 Slc2a5 protein_coding protein_coding MGP_AJ_T0069461.1 MGP_AJ_G0029115.1 mouse_genomes_project 4 147608007 147620931 + Slc2a5 protein_coding processed_transcript MGP_AJ_T0069462.1 MGP_AJ_G0029115.1 mouse_genomes_project 4 147620243 147623220 + Slc2a5 protein_coding retained_intron MGP_AJ_T0069463.1 MGP_AJ_G0029115.1 mouse_genomes_project 4 147620444 147623805 + Slc2a5 protein_coding processed_transcript MGP_AJ_T0065996.1 MGP_AJ_G0028314.1 mouse_genomes_project 4 59207300 59226060 - MGP_AJ_P0065996 Wdr31 protein_coding protein_coding MGP_AJ_T0065997.1 MGP_AJ_G0028314.1 mouse_genomes_project 4 59208302 59226060 - MGP_AJ_P0065997 Wdr31 protein_coding protein_coding MGP_AJ_T0065998.1 MGP_AJ_G0028314.1 mouse_genomes_project 4 59208302 59215585 - MGP_AJ_P0065998 Wdr31 protein_coding protein_coding MGP_AJ_T0065999.1 MGP_AJ_G0028314.1 mouse_genomes_project 4 59208302 59226060 - MGP_AJ_P0065999 Wdr31 protein_coding protein_coding MGP_AJ_T0066000.1 MGP_AJ_G0028314.1 mouse_genomes_project 4 59212210 59213943 - Wdr31 protein_coding retained_intron MGP_AJ_T0066001.1 MGP_AJ_G0028314.1 mouse_genomes_project 4 59213055 59216026 - Wdr31 protein_coding retained_intron MGP_AJ_T0066002.1 MGP_AJ_G0028314.1 mouse_genomes_project 4 59218520 59226069 - MGP_AJ_P0066002 Wdr31 protein_coding protein_coding MGP_AJ_T0066003.1 MGP_AJ_G0028314.1 mouse_genomes_project 4 59219175 59226047 - MGP_AJ_P0066003 Wdr31 protein_coding protein_coding MGP_AJ_T0014667.1 MGP_AJ_G0012762.1 mouse_genomes_project 4 94952906 94953452 - processed_pseudogene processed_pseudogene MGP_AJ_T0069041.1 MGP_AJ_G0028997.1 mouse_genomes_project 4 137850256 137874545 + MGP_AJ_P0069041 Spata21 protein_coding protein_coding MGP_AJ_T0069042.1 MGP_AJ_G0028997.1 mouse_genomes_project 4 137865774 137873331 + Spata21 protein_coding retained_intron MGP_AJ_T0014477.1 MGP_AJ_G0012572.1 mouse_genomes_project 4 25089355 25089772 + processed_pseudogene processed_pseudogene MGP_AJ_T0068438.1 MGP_AJ_G0028857.1 mouse_genomes_project 4 130130393 130133525 + MGP_AJ_P0068438 Nr0b2 protein_coding protein_coding MGP_AJ_T0007878.1 MGP_AJ_G0006438.1 mouse_genomes_project 4 65102281 65111499 - Gm12911 lincRNA lincRNA MGP_AJ_T0101190.1 MGP_AJ_G0039156.1 mouse_genomes_project 4 12461315 12461383 - Gm26148 snoRNA snoRNA MGP_AJ_T0068642.1 MGP_AJ_G0028901.1 mouse_genomes_project 4 131987096 132015742 - MGP_AJ_P0068642 Ncmap protein_coding protein_coding MGP_AJ_T0068643.1 MGP_AJ_G0028901.1 mouse_genomes_project 4 131987096 132003176 - MGP_AJ_P0068643 Ncmap protein_coding protein_coding MGP_AJ_T0068644.1 MGP_AJ_G0028901.1 mouse_genomes_project 4 131987096 132015711 - MGP_AJ_P0068644 Ncmap protein_coding protein_coding MGP_AJ_T0068645.1 MGP_AJ_G0028901.1 mouse_genomes_project 4 131987097 132003193 - MGP_AJ_P0068645 Ncmap protein_coding protein_coding MGP_AJ_T0068646.1 MGP_AJ_G0028901.1 mouse_genomes_project 4 131987747 132003166 - MGP_AJ_P0068646 Ncmap protein_coding protein_coding MGP_AJ_T0068647.1 MGP_AJ_G0028901.1 mouse_genomes_project 4 131988037 131992209 - Ncmap protein_coding processed_transcript MGP_AJ_T0068648.1 MGP_AJ_G0028901.1 mouse_genomes_project 4 131988172 132003193 - MGP_AJ_P0068648 Ncmap protein_coding protein_coding MGP_AJ_T0068649.1 MGP_AJ_G0028901.1 mouse_genomes_project 4 131989457 132015748 - MGP_AJ_P0068649 Ncmap protein_coding protein_coding MGP_AJ_T0014773.1 MGP_AJ_G0012868.1 mouse_genomes_project 4 123956837 123957519 - processed_pseudogene processed_pseudogene MGP_AJ_T0067106.1 MGP_AJ_G0028558.1 mouse_genomes_project 4 111469440 111494741 - MGP_AJ_P0067106 Cyp4x1 protein_coding protein_coding MGP_AJ_T0098843.1 MGP_AJ_G0036827.1 mouse_genomes_project 4 129409616 129409781 - Gm22767 scaRNA scaRNA MGP_AJ_T0014817.1 MGP_AJ_G0012912.1 mouse_genomes_project 4 140552202 140552763 + processed_pseudogene processed_pseudogene MGP_AJ_T0069800.1 MGP_AJ_G0029175.1 mouse_genomes_project 4 152861486 152868093 + Faap20 protein_coding processed_transcript MGP_AJ_T0069801.1 MGP_AJ_G0029175.1 mouse_genomes_project 4 152861545 152862623 + Faap20 protein_coding processed_transcript MGP_AJ_T0069802.1 MGP_AJ_G0029175.1 mouse_genomes_project 4 152861561 152862481 + Faap20 protein_coding processed_transcript MGP_AJ_T0069803.1 MGP_AJ_G0029175.1 mouse_genomes_project 4 152861581 152868137 + Faap20 protein_coding processed_transcript MGP_AJ_T0069804.1 MGP_AJ_G0029175.1 mouse_genomes_project 4 152861648 152868361 + MGP_AJ_P0069804 Faap20 protein_coding protein_coding MGP_AJ_T0069805.1 MGP_AJ_G0029175.1 mouse_genomes_project 4 152861648 152868357 + MGP_AJ_P0069805 Faap20 protein_coding nonsense_mediated_decay MGP_AJ_T0069806.1 MGP_AJ_G0029175.1 mouse_genomes_project 4 152861671 152868057 + MGP_AJ_P0069806 Faap20 protein_coding protein_coding MGP_AJ_T0069807.1 MGP_AJ_G0029175.1 mouse_genomes_project 4 152861685 152868358 + MGP_AJ_P0069807 Faap20 protein_coding protein_coding MGP_AJ_T0069808.1 MGP_AJ_G0029175.1 mouse_genomes_project 4 152862002 152868092 + MGP_AJ_P0069808 Faap20 protein_coding protein_coding MGP_AJ_T0069809.1 MGP_AJ_G0029175.1 mouse_genomes_project 4 152862366 152868122 + Faap20 protein_coding retained_intron MGP_AJ_T0067107.1 MGP_AJ_G0028559.1 mouse_genomes_project 4 111587758 111600666 + MGP_AJ_P0067107 Cyp4a29 protein_coding protein_coding MGP_AJ_T0065563.1 MGP_AJ_G0028194.1 mouse_genomes_project 4 41644583 41653923 + MGP_AJ_P0065563 Grhpr protein_coding protein_coding MGP_AJ_T0065564.1 MGP_AJ_G0028194.1 mouse_genomes_project 4 41644591 41647132 + MGP_AJ_P0065564 Grhpr protein_coding protein_coding MGP_AJ_T0065565.1 MGP_AJ_G0028194.1 mouse_genomes_project 4 41644620 41652199 + MGP_AJ_P0065565 Grhpr protein_coding protein_coding MGP_AJ_T0065566.1 MGP_AJ_G0028194.1 mouse_genomes_project 4 41644621 41650516 + Grhpr protein_coding processed_transcript MGP_AJ_T0065567.1 MGP_AJ_G0028194.1 mouse_genomes_project 4 41644649 41650437 + MGP_AJ_P0065567 Grhpr protein_coding nonsense_mediated_decay MGP_AJ_T0065568.1 MGP_AJ_G0028194.1 mouse_genomes_project 4 41644688 41649579 + Grhpr protein_coding processed_transcript MGP_AJ_T0068756.1 MGP_AJ_G0028928.1 mouse_genomes_project 4 133188184 133240972 - MGP_AJ_P0068756 Kdm1a protein_coding protein_coding MGP_AJ_T0068757.1 MGP_AJ_G0028928.1 mouse_genomes_project 4 133188188 133240936 - MGP_AJ_P0068757 Kdm1a protein_coding protein_coding MGP_AJ_T0068758.1 MGP_AJ_G0028928.1 mouse_genomes_project 4 133188495 133240557 - MGP_AJ_P0068758 Kdm1a protein_coding protein_coding MGP_AJ_T0068759.1 MGP_AJ_G0028928.1 mouse_genomes_project 4 133188524 133190188 - Kdm1a protein_coding retained_intron MGP_AJ_T0068760.1 MGP_AJ_G0028928.1 mouse_genomes_project 4 133189519 133190818 - Kdm1a protein_coding retained_intron MGP_AJ_T0068761.1 MGP_AJ_G0028928.1 mouse_genomes_project 4 133190766 133192968 - Kdm1a protein_coding retained_intron MGP_AJ_T0068762.1 MGP_AJ_G0028928.1 mouse_genomes_project 4 133192850 133198958 - Kdm1a protein_coding retained_intron MGP_AJ_T0068763.1 MGP_AJ_G0028928.1 mouse_genomes_project 4 133192878 133206064 - MGP_AJ_P0068763 Kdm1a protein_coding protein_coding MGP_AJ_T0068764.1 MGP_AJ_G0028928.1 mouse_genomes_project 4 133195989 133214957 - MGP_AJ_P0068764 Kdm1a protein_coding protein_coding MGP_AJ_T0066450.1 MGP_AJ_G0028425.1 mouse_genomes_project 4 93001781 93064600 - MGP_AJ_P0066450 Cyp2j11 protein_coding protein_coding MGP_AJ_T0007910.1 MGP_AJ_G0006466.1 mouse_genomes_project 4 98031209 98032192 + Gm12801 lincRNA lincRNA MGP_AJ_T0004495.1 MGP_AJ_G0003908.1 mouse_genomes_project 4 103824826 103829348 - Gm12786 antisense antisense MGP_AJ_T0067594.1 MGP_AJ_G0028666.1 mouse_genomes_project 4 116620705 116626860 + MGP_AJ_P0067594 Edn2 protein_coding protein_coding MGP_AJ_T0067950.1 MGP_AJ_G0028761.1 mouse_genomes_project 4 124930387 124931133 - MGP_AJ_P0067950 Hmgb4 protein_coding protein_coding MGP_AJ_T0064584.1 MGP_AJ_G0027980.1 mouse_genomes_project 4 52259 95356 + MGP_AJ_P0064584 Tgs1 protein_coding protein_coding MGP_AJ_T0064585.1 MGP_AJ_G0027980.1 mouse_genomes_project 4 52334 61312 + Tgs1 protein_coding retained_intron MGP_AJ_T0064586.1 MGP_AJ_G0027980.1 mouse_genomes_project 4 70974 76054 + Tgs1 protein_coding processed_transcript MGP_AJ_T0064587.1 MGP_AJ_G0027980.1 mouse_genomes_project 4 76001 79999 + Tgs1 protein_coding retained_intron MGP_AJ_T0064588.1 MGP_AJ_G0027980.1 mouse_genomes_project 4 83084 92862 + Tgs1 protein_coding retained_intron MGP_AJ_T0066059.1 MGP_AJ_G0028329.1 mouse_genomes_project 4 60179707 60260669 - MGP_AJ_P0066059 Whrn protein_coding protein_coding MGP_AJ_T0066060.1 MGP_AJ_G0028329.1 mouse_genomes_project 4 60179712 60259035 - Whrn protein_coding processed_transcript MGP_AJ_T0066061.1 MGP_AJ_G0028329.1 mouse_genomes_project 4 60179712 60198124 - Whrn protein_coding retained_intron MGP_AJ_T0066062.1 MGP_AJ_G0028329.1 mouse_genomes_project 4 60179712 60198124 - Whrn protein_coding retained_intron MGP_AJ_T0066063.1 MGP_AJ_G0028329.1 mouse_genomes_project 4 60179712 60261387 - MGP_AJ_P0066063 Whrn protein_coding protein_coding MGP_AJ_T0066064.1 MGP_AJ_G0028329.1 mouse_genomes_project 4 60179712 60261387 - MGP_AJ_P0066064 Whrn protein_coding protein_coding MGP_AJ_T0066065.1 MGP_AJ_G0028329.1 mouse_genomes_project 4 60179712 60261387 - MGP_AJ_P0066065 Whrn protein_coding protein_coding MGP_AJ_T0066066.1 MGP_AJ_G0028329.1 mouse_genomes_project 4 60179712 60261387 - MGP_AJ_P0066066 Whrn protein_coding protein_coding MGP_AJ_T0066067.1 MGP_AJ_G0028329.1 mouse_genomes_project 4 60184271 60196731 - MGP_AJ_P0066067 Whrn protein_coding nonsense_mediated_decay MGP_AJ_T0066068.1 MGP_AJ_G0028329.1 mouse_genomes_project 4 60190514 60196804 - Whrn protein_coding processed_transcript MGP_AJ_T0066069.1 MGP_AJ_G0028329.1 mouse_genomes_project 4 60196234 60261427 - MGP_AJ_P0066069 Whrn protein_coding protein_coding MGP_AJ_T0066070.1 MGP_AJ_G0028329.1 mouse_genomes_project 4 60199602 60226850 - Whrn protein_coding retained_intron MGP_AJ_T0066071.1 MGP_AJ_G0028329.1 mouse_genomes_project 4 60201030 60238173 - MGP_AJ_P0066071 Whrn protein_coding protein_coding MGP_AJ_T0066072.1 MGP_AJ_G0028329.1 mouse_genomes_project 4 60225710 60260195 - MGP_AJ_P0066072 Whrn protein_coding protein_coding MGP_AJ_T0066073.1 MGP_AJ_G0028329.1 mouse_genomes_project 4 60226367 60260113 - Whrn protein_coding retained_intron MGP_AJ_T0014837.1 MGP_AJ_G0012932.1 mouse_genomes_project 4 150244664 150244920 - processed_pseudogene processed_pseudogene MGP_AJ_T0069753.1 MGP_AJ_G0029167.1 mouse_genomes_project 4 152525560 152531596 - MGP_AJ_P0069753 Tnfrsf14 protein_coding protein_coding MGP_AJ_T0069754.1 MGP_AJ_G0029167.1 mouse_genomes_project 4 152525560 152531471 - MGP_AJ_P0069754 Tnfrsf14 protein_coding protein_coding MGP_AJ_T0069755.1 MGP_AJ_G0029167.1 mouse_genomes_project 4 152525594 152531440 - MGP_AJ_P0069755 Tnfrsf14 protein_coding unknown_likely_coding MGP_AJ_T0069756.1 MGP_AJ_G0029167.1 mouse_genomes_project 4 152525611 152531946 - MGP_AJ_P0069756 Tnfrsf14 protein_coding protein_coding MGP_AJ_T0069757.1 MGP_AJ_G0029167.1 mouse_genomes_project 4 152527821 152531946 - Tnfrsf14 protein_coding processed_transcript MGP_AJ_T0069758.1 MGP_AJ_G0029167.1 mouse_genomes_project 4 152530021 152531957 - Tnfrsf14 protein_coding processed_transcript MGP_AJ_T0018110.1 MGP_AJ_G0015561.1 mouse_genomes_project 4 152257091 152266839 - Gm13110 processed_transcript processed_transcript MGP_AJ_T0066084.1 MGP_AJ_G0028334.1 mouse_genomes_project 4 60498389 60516415 - MGP_AJ_P0066084 Tnfsf15 protein_coding protein_coding MGP_AJ_T0007972.1 MGP_AJ_G0006510.1 mouse_genomes_project 4 126592822 126595752 + E330017L17Rik lincRNA lincRNA MGP_AJ_T0007973.1 MGP_AJ_G0006510.1 mouse_genomes_project 4 126592832 126595617 + E330017L17Rik lincRNA lincRNA MGP_AJ_T0007974.1 MGP_AJ_G0006510.1 mouse_genomes_project 4 126592864 126595371 + E330017L17Rik lincRNA lincRNA MGP_AJ_T0007975.1 MGP_AJ_G0006510.1 mouse_genomes_project 4 126593039 126606029 + E330017L17Rik lincRNA lincRNA MGP_AJ_T0014704.1 MGP_AJ_G0012799.1 mouse_genomes_project 4 105259989 105260525 - processed_pseudogene processed_pseudogene MGP_AJ_T0004430.1 MGP_AJ_G0003858.1 mouse_genomes_project 4 16536707 16542534 - 4930480G23Rik antisense antisense MGP_AJ_T0004456.1 MGP_AJ_G0003879.1 mouse_genomes_project 4 43853281 43864248 - Gm12426 antisense antisense MGP_AJ_T0065114.1 MGP_AJ_G0028107.1 mouse_genomes_project 4 37364289 37375373 + MGP_AJ_P0065114 Spink4 protein_coding protein_coding MGP_AJ_T0065115.1 MGP_AJ_G0028107.1 mouse_genomes_project 4 37364291 37369050 + Spink4 protein_coding processed_transcript MGP_AJ_T0018065.1 MGP_AJ_G0015535.1 mouse_genomes_project 4 91757013 91776141 - Gm12703 processed_transcript processed_transcript MGP_AJ_T0014734.1 MGP_AJ_G0012829.1 mouse_genomes_project 4 114862350 114862558 - processed_pseudogene processed_pseudogene MGP_AJ_T0011575.1 MGP_AJ_G0009697.1 mouse_genomes_project 4 95000859 95000973 + Gm24203 misc_RNA misc_RNA MGP_AJ_T0014833.1 MGP_AJ_G0012928.1 mouse_genomes_project 4 147711307 147711716 + processed_pseudogene processed_pseudogene MGP_AJ_T0067940.1 MGP_AJ_G0028755.1 mouse_genomes_project 4 123971468 123974087 - MGP_AJ_P0067940 Gja4 protein_coding protein_coding MGP_AJ_T0069103.1 MGP_AJ_G0029011.1 mouse_genomes_project 4 138387781 138392980 - MGP_AJ_P0069103 Tmem82 protein_coding nonsense_mediated_decay MGP_AJ_T0069104.1 MGP_AJ_G0029011.1 mouse_genomes_project 4 138388638 138392642 - MGP_AJ_P0069104 Tmem82 protein_coding protein_coding MGP_AJ_T0069105.1 MGP_AJ_G0029011.1 mouse_genomes_project 4 138388642 138392385 - Tmem82 protein_coding retained_intron MGP_AJ_T0065754.1 MGP_AJ_G0028242.1 mouse_genomes_project 4 46215529 46224027 - MGP_AJ_P0065754 Mrpl50 protein_coding protein_coding MGP_AJ_T0064975.1 MGP_AJ_G0028072.1 mouse_genomes_project 4 29200661 29260594 - MGP_AJ_P0064975 Ankrd6 protein_coding unknown_likely_coding MGP_AJ_T0064976.1 MGP_AJ_G0028072.1 mouse_genomes_project 4 29200668 29348405 - MGP_AJ_P0064976 Ankrd6 protein_coding protein_coding MGP_AJ_T0064977.1 MGP_AJ_G0028072.1 mouse_genomes_project 4 29202373 29256841 - MGP_AJ_P0064977 Ankrd6 protein_coding protein_coding MGP_AJ_T0064978.1 MGP_AJ_G0028072.1 mouse_genomes_project 4 29221052 29319658 - Ankrd6 protein_coding processed_transcript MGP_AJ_T0064979.1 MGP_AJ_G0028072.1 mouse_genomes_project 4 29223723 29257082 - Ankrd6 protein_coding processed_transcript MGP_AJ_T0007796.1 MGP_AJ_G0006369.1 mouse_genomes_project 4 136075 144539 + 2210414B05Rik lincRNA lincRNA MGP_AJ_T0067479.1 MGP_AJ_G0028634.1 mouse_genomes_project 4 114970999 115038014 - MGP_AJ_P0067479 Cfap57 protein_coding unknown_likely_coding MGP_AJ_T0069088.1 MGP_AJ_G0029010.1 mouse_genomes_project 4 138350112 138373574 - MGP_AJ_P0069088 Fblim1 protein_coding protein_coding MGP_AJ_T0069089.1 MGP_AJ_G0029010.1 mouse_genomes_project 4 138350112 138371874 - MGP_AJ_P0069089 Fblim1 protein_coding protein_coding MGP_AJ_T0069090.1 MGP_AJ_G0029010.1 mouse_genomes_project 4 138350112 138379702 - MGP_AJ_P0069090 Fblim1 protein_coding protein_coding MGP_AJ_T0069091.1 MGP_AJ_G0029010.1 mouse_genomes_project 4 138362997 138373485 - MGP_AJ_P0069091 Fblim1 protein_coding protein_coding MGP_AJ_T0069092.1 MGP_AJ_G0029010.1 mouse_genomes_project 4 138363019 138379746 - MGP_AJ_P0069092 Fblim1 protein_coding protein_coding MGP_AJ_T0069093.1 MGP_AJ_G0029010.1 mouse_genomes_project 4 138363019 138379687 - MGP_AJ_P0069093 Fblim1 protein_coding protein_coding MGP_AJ_T0069094.1 MGP_AJ_G0029010.1 mouse_genomes_project 4 138363042 138372167 - MGP_AJ_P0069094 Fblim1 protein_coding protein_coding MGP_AJ_T0069095.1 MGP_AJ_G0029010.1 mouse_genomes_project 4 138363686 138373682 - MGP_AJ_P0069095 Fblim1 protein_coding protein_coding MGP_AJ_T0069096.1 MGP_AJ_G0029010.1 mouse_genomes_project 4 138363749 138370119 - Fblim1 protein_coding processed_transcript MGP_AJ_T0069097.1 MGP_AJ_G0029010.1 mouse_genomes_project 4 138363765 138373538 - MGP_AJ_P0069097 Fblim1 protein_coding protein_coding MGP_AJ_T0069098.1 MGP_AJ_G0029010.1 mouse_genomes_project 4 138363766 138371874 - MGP_AJ_P0069098 Fblim1 protein_coding protein_coding MGP_AJ_T0069099.1 MGP_AJ_G0029010.1 mouse_genomes_project 4 138363776 138371856 - MGP_AJ_P0069099 Fblim1 protein_coding protein_coding MGP_AJ_T0069100.1 MGP_AJ_G0029010.1 mouse_genomes_project 4 138368901 138379675 - MGP_AJ_P0069100 Fblim1 protein_coding protein_coding MGP_AJ_T0069101.1 MGP_AJ_G0029010.1 mouse_genomes_project 4 138368952 138379686 - MGP_AJ_P0069101 Fblim1 protein_coding protein_coding MGP_AJ_T0069102.1 MGP_AJ_G0029010.1 mouse_genomes_project 4 138369019 138379677 - MGP_AJ_P0069102 Fblim1 protein_coding protein_coding MGP_AJ_T0014603.1 MGP_AJ_G0012698.1 mouse_genomes_project 4 71460186 71461404 - processed_pseudogene processed_pseudogene MGP_AJ_T0067740.1 MGP_AJ_G0028708.1 mouse_genomes_project 4 121197383 121198256 - MGP_AJ_P0067740 3100002H09Rik protein_coding protein_coding MGP_AJ_T0065718.1 MGP_AJ_G0028231.1 mouse_genomes_project 4 44868446 44956057 - MGP_AJ_P0065718 Erp44 protein_coding protein_coding MGP_AJ_T0065719.1 MGP_AJ_G0028231.1 mouse_genomes_project 4 44869613 44872148 - Erp44 protein_coding processed_transcript MGP_AJ_T0065720.1 MGP_AJ_G0028231.1 mouse_genomes_project 4 44913971 44920270 - Erp44 protein_coding processed_transcript MGP_AJ_T0065721.1 MGP_AJ_G0028231.1 mouse_genomes_project 4 44916614 44955951 - Erp44 protein_coding processed_transcript MGP_AJ_T0067140.1 MGP_AJ_G0028571.1 mouse_genomes_project 4 112229328 112269367 + Mknk1 protein_coding processed_transcript MGP_AJ_T0067141.1 MGP_AJ_G0028571.1 mouse_genomes_project 4 112229328 112269367 + MGP_AJ_P0067141 Mknk1 protein_coding protein_coding MGP_AJ_T0067142.1 MGP_AJ_G0028571.1 mouse_genomes_project 4 112229351 112254731 + MGP_AJ_P0067142 Mknk1 protein_coding protein_coding MGP_AJ_T0067143.1 MGP_AJ_G0028571.1 mouse_genomes_project 4 112229353 112263987 + Mknk1 protein_coding processed_transcript MGP_AJ_T0067144.1 MGP_AJ_G0028571.1 mouse_genomes_project 4 112229363 112238717 + Mknk1 protein_coding processed_transcript MGP_AJ_T0067145.1 MGP_AJ_G0028571.1 mouse_genomes_project 4 112229363 112269367 + MGP_AJ_P0067145 Mknk1 protein_coding protein_coding MGP_AJ_T0067146.1 MGP_AJ_G0028571.1 mouse_genomes_project 4 112229365 112256698 + MGP_AJ_P0067146 Mknk1 protein_coding protein_coding MGP_AJ_T0067147.1 MGP_AJ_G0028571.1 mouse_genomes_project 4 112229370 112254768 + MGP_AJ_P0067147 Mknk1 protein_coding protein_coding MGP_AJ_T0067148.1 MGP_AJ_G0028571.1 mouse_genomes_project 4 112229374 112247241 + MGP_AJ_P0067148 Mknk1 protein_coding protein_coding MGP_AJ_T0067149.1 MGP_AJ_G0028571.1 mouse_genomes_project 4 112229390 112253427 + Mknk1 protein_coding processed_transcript MGP_AJ_T0067150.1 MGP_AJ_G0028571.1 mouse_genomes_project 4 112247175 112268781 + Mknk1 protein_coding processed_transcript MGP_AJ_T0067151.1 MGP_AJ_G0028571.1 mouse_genomes_project 4 112247249 112266727 + Mknk1 protein_coding processed_transcript MGP_AJ_T0067152.1 MGP_AJ_G0028571.1 mouse_genomes_project 4 112256432 112257493 + Mknk1 protein_coding processed_transcript MGP_AJ_T0067153.1 MGP_AJ_G0028571.1 mouse_genomes_project 4 112264887 112267169 + Mknk1 protein_coding processed_transcript MGP_AJ_T0069233.1 MGP_AJ_G0029070.1 mouse_genomes_project 4 142383944 142432108 - MGP_AJ_P0069233 Tnfrsf8 protein_coding protein_coding MGP_AJ_T0069234.1 MGP_AJ_G0029070.1 mouse_genomes_project 4 142383946 142432125 - MGP_AJ_P0069234 Tnfrsf8 protein_coding nonsense_mediated_decay MGP_AJ_T0098450.1 MGP_AJ_G0036434.1 mouse_genomes_project 4 120468868 120470367 - pseudogene pseudogene MGP_AJ_T0064829.1 MGP_AJ_G0028036.1 mouse_genomes_project 4 15403246 15672082 - MGP_AJ_P0064829 Cnbd1 protein_coding protein_coding MGP_AJ_T0068882.1 MGP_AJ_G0028958.1 mouse_genomes_project 4 135273070 135339586 - MGP_AJ_P0068882 Vwa5b1 protein_coding protein_coding MGP_AJ_T0068883.1 MGP_AJ_G0028958.1 mouse_genomes_project 4 135275049 135285104 - MGP_AJ_P0068883 Vwa5b1 protein_coding protein_coding MGP_AJ_T0068884.1 MGP_AJ_G0028958.1 mouse_genomes_project 4 135285650 135339737 - MGP_AJ_P0068884 Vwa5b1 protein_coding nonsense_mediated_decay MGP_AJ_T0068885.1 MGP_AJ_G0028958.1 mouse_genomes_project 4 135298249 135310398 - Vwa5b1 protein_coding processed_transcript MGP_AJ_T0068886.1 MGP_AJ_G0028958.1 mouse_genomes_project 4 135304011 135310867 - Vwa5b1 protein_coding processed_transcript MGP_AJ_T0010611.1 MGP_AJ_G0008733.1 mouse_genomes_project 4 117247126 117247215 - Mir30c-1 miRNA miRNA MGP_AJ_T0001431.1 MGP_AJ_G0001352.1 mouse_genomes_project 4 142070229 142071923 - TEC TEC MGP_AJ_T0014647.1 MGP_AJ_G0012742.1 mouse_genomes_project 4 87252299 87253051 + processed_pseudogene processed_pseudogene MGP_AJ_T0069574.1 MGP_AJ_G0029137.1 mouse_genomes_project 4 149656730 149660916 + MGP_AJ_P0069574 Tnfrsf25 protein_coding protein_coding MGP_AJ_T0069575.1 MGP_AJ_G0029137.1 mouse_genomes_project 4 149657139 149660908 + MGP_AJ_P0069575 Tnfrsf25 protein_coding protein_coding MGP_AJ_T0069576.1 MGP_AJ_G0029137.1 mouse_genomes_project 4 149657195 149657783 + Tnfrsf25 protein_coding processed_transcript MGP_AJ_T0069577.1 MGP_AJ_G0029137.1 mouse_genomes_project 4 149658767 149660120 + Tnfrsf25 protein_coding processed_transcript MGP_AJ_T0004577.1 MGP_AJ_G0003972.1 mouse_genomes_project 4 138765671 138769477 + Fhad1os1 antisense antisense MGP_AJ_T0010586.1 MGP_AJ_G0008708.1 mouse_genomes_project 4 41267246 41267324 - Mir5120 miRNA miRNA MGP_AJ_T0066817.1 MGP_AJ_G0028504.1 mouse_genomes_project 4 104479608 104486823 - MGP_AJ_P0066817 Dmrtb1 protein_coding protein_coding MGP_AJ_T0066818.1 MGP_AJ_G0028504.1 mouse_genomes_project 4 104479610 104487473 - MGP_AJ_P0066818 Dmrtb1 protein_coding protein_coding MGP_AJ_T0066819.1 MGP_AJ_G0028504.1 mouse_genomes_project 4 104480222 104484215 - Dmrtb1 protein_coding retained_intron MGP_AJ_T0067823.1 MGP_AJ_G0028731.1 mouse_genomes_project 4 122770750 122772881 + MGP_AJ_P0067823 Eva1b protein_coding protein_coding MGP_AJ_T0067824.1 MGP_AJ_G0028731.1 mouse_genomes_project 4 122771009 122772882 + MGP_AJ_P0067824 Eva1b protein_coding protein_coding MGP_AJ_T0067825.1 MGP_AJ_G0028731.1 mouse_genomes_project 4 122771538 122772872 + MGP_AJ_P0067825 Eva1b protein_coding protein_coding MGP_AJ_T0014544.1 MGP_AJ_G0012639.1 mouse_genomes_project 4 48713480 48713780 - processed_pseudogene processed_pseudogene MGP_AJ_T0014512.1 MGP_AJ_G0012607.1 mouse_genomes_project 4 36221359 36222154 + processed_pseudogene processed_pseudogene MGP_AJ_T0065530.1 MGP_AJ_G0028191.1 mouse_genomes_project 4 40961659 41023534 + MGP_AJ_P0065530 Melk protein_coding protein_coding MGP_AJ_T0065531.1 MGP_AJ_G0028191.1 mouse_genomes_project 4 40963442 40990259 + MGP_AJ_P0065531 Melk protein_coding protein_coding MGP_AJ_T0065532.1 MGP_AJ_G0028191.1 mouse_genomes_project 4 40964343 40988834 + Melk protein_coding processed_transcript MGP_AJ_T0065533.1 MGP_AJ_G0028191.1 mouse_genomes_project 4 40964343 40982646 + MGP_AJ_P0065533 Melk protein_coding protein_coding MGP_AJ_T0014404.1 MGP_AJ_G0012499.1 mouse_genomes_project 4 6932327 6933256 - processed_pseudogene processed_pseudogene MGP_AJ_T0066580.1 MGP_AJ_G0028457.1 mouse_genomes_project 4 98398687 98410344 + MGP_AJ_P0066580 Leprot protein_coding protein_coding MGP_AJ_T0066581.1 MGP_AJ_G0028457.1 mouse_genomes_project 4 98398762 98410344 + MGP_AJ_P0066581 Leprot protein_coding protein_coding MGP_AJ_T0065595.1 MGP_AJ_G0028201.1 mouse_genomes_project 4 41986291 41990304 - MGP_AJ_P0065595 Exosc3 protein_coding protein_coding MGP_AJ_T0065596.1 MGP_AJ_G0028201.1 mouse_genomes_project 4 41986472 41990011 - Exosc3 protein_coding processed_transcript MGP_AJ_T0065597.1 MGP_AJ_G0028201.1 mouse_genomes_project 4 41986632 42012444 - MGP_AJ_P0065597 Exosc3 protein_coding protein_coding MGP_AJ_T0065598.1 MGP_AJ_G0028201.1 mouse_genomes_project 4 41987143 41990279 - Exosc3 protein_coding processed_transcript MGP_AJ_T0014485.1 MGP_AJ_G0012580.1 mouse_genomes_project 4 28541464 28541901 + processed_pseudogene processed_pseudogene MGP_AJ_T0099897.1 MGP_AJ_G0037863.1 mouse_genomes_project 4 13406713 13406819 - Gm23975 snRNA snRNA MGP_AJ_T0101268.1 MGP_AJ_G0039234.1 mouse_genomes_project 4 140031868 140032000 + Gm22039 snoRNA snoRNA MGP_AJ_T0004445.1 MGP_AJ_G0003870.1 mouse_genomes_project 4 40230859 40251623 + Gm12472 antisense antisense MGP_AJ_T0068066.1 MGP_AJ_G0028786.1 mouse_genomes_project 4 126194871 126220328 - MGP_AJ_P0068066 protein_coding protein_coding MGP_AJ_T0068067.1 MGP_AJ_G0028786.1 mouse_genomes_project 4 126196872 126201270 - protein_coding retained_intron MGP_AJ_T0068068.1 MGP_AJ_G0028786.1 mouse_genomes_project 4 126200970 126206415 - protein_coding retained_intron MGP_AJ_T0068069.1 MGP_AJ_G0028786.1 mouse_genomes_project 4 126201117 126203350 - protein_coding retained_intron MGP_AJ_T0068070.1 MGP_AJ_G0028786.1 mouse_genomes_project 4 126206004 126220306 - protein_coding retained_intron MGP_AJ_T0007887.1 MGP_AJ_G0006446.1 mouse_genomes_project 4 80580963 80585080 - Gm11415 lincRNA lincRNA MGP_AJ_T0101800.1 MGP_AJ_G0039710.1 mouse_genomes_project 4 6389655 6391088 - transcribed_processed_pseudogene processed_transcript MGP_AJ_T0101801.1 MGP_AJ_G0039710.1 mouse_genomes_project 4 6390328 6391326 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0014808.1 MGP_AJ_G0012903.1 mouse_genomes_project 4 136062528 136063409 - processed_pseudogene processed_pseudogene MGP_AJ_T0065483.1 MGP_AJ_G0028179.1 mouse_genomes_project 4 40349372 40353979 - MGP_AJ_P0065483 Olfr71 protein_coding protein_coding MGP_AJ_T0065484.1 MGP_AJ_G0028179.1 mouse_genomes_project 4 40349372 40350311 - MGP_AJ_P0065484 Olfr71 protein_coding protein_coding MGP_AJ_T0014681.1 MGP_AJ_G0012776.1 mouse_genomes_project 4 98110760 98111474 - processed_pseudogene processed_pseudogene MGP_AJ_T0067791.1 MGP_AJ_G0028723.1 mouse_genomes_project 4 121690218 121718925 + MGP_AJ_P0067791 Meaf6 protein_coding protein_coding MGP_AJ_T0067792.1 MGP_AJ_G0028723.1 mouse_genomes_project 4 121690235 121715600 + MGP_AJ_P0067792 Meaf6 protein_coding protein_coding MGP_AJ_T0067793.1 MGP_AJ_G0028723.1 mouse_genomes_project 4 121690248 121715425 + MGP_AJ_P0067793 Meaf6 protein_coding nonsense_mediated_decay MGP_AJ_T0067794.1 MGP_AJ_G0028723.1 mouse_genomes_project 4 121690249 121695245 + Meaf6 protein_coding processed_transcript MGP_AJ_T0067795.1 MGP_AJ_G0028723.1 mouse_genomes_project 4 121690345 121715163 + MGP_AJ_P0067795 Meaf6 protein_coding protein_coding MGP_AJ_T0067796.1 MGP_AJ_G0028723.1 mouse_genomes_project 4 121691272 121715168 + MGP_AJ_P0067796 Meaf6 protein_coding nonsense_mediated_decay MGP_AJ_T0067797.1 MGP_AJ_G0028723.1 mouse_genomes_project 4 121694982 121708503 + Meaf6 protein_coding processed_transcript MGP_AJ_T0067798.1 MGP_AJ_G0028723.1 mouse_genomes_project 4 121713694 121715139 + Meaf6 protein_coding retained_intron MGP_AJ_T0014488.1 MGP_AJ_G0012583.1 mouse_genomes_project 4 29061186 29061346 - processed_pseudogene processed_pseudogene MGP_AJ_T0068428.1 MGP_AJ_G0028854.1 mouse_genomes_project 4 130068527 130075920 - MGP_AJ_P0068428 Trnp1 protein_coding protein_coding MGP_AJ_T0068429.1 MGP_AJ_G0028854.1 mouse_genomes_project 4 130068545 130075089 - Trnp1 protein_coding processed_transcript MGP_AJ_T0064925.1 MGP_AJ_G0028062.1 mouse_genomes_project 4 22054032 22243768 - MGP_AJ_P0064925 Fut9 protein_coding protein_coding MGP_AJ_T0064926.1 MGP_AJ_G0028062.1 mouse_genomes_project 4 22063594 22243866 - MGP_AJ_P0064926 Fut9 protein_coding protein_coding MGP_AJ_T0064927.1 MGP_AJ_G0028062.1 mouse_genomes_project 4 22241324 22243477 - Fut9 protein_coding processed_transcript MGP_AJ_T0068399.1 MGP_AJ_G0028847.1 mouse_genomes_project 4 129781357 129791090 + Cd164l2 protein_coding processed_transcript MGP_AJ_T0068400.1 MGP_AJ_G0028847.1 mouse_genomes_project 4 129782131 129793562 + MGP_AJ_P0068400 Cd164l2 protein_coding unknown_likely_coding MGP_AJ_T0068401.1 MGP_AJ_G0028847.1 mouse_genomes_project 4 129790130 129793859 + MGP_AJ_P0068401 Cd164l2 protein_coding protein_coding MGP_AJ_T0068402.1 MGP_AJ_G0028847.1 mouse_genomes_project 4 129790767 129793859 + Cd164l2 protein_coding processed_transcript MGP_AJ_T0068403.1 MGP_AJ_G0028847.1 mouse_genomes_project 4 129790853 129793546 + Cd164l2 protein_coding retained_intron MGP_AJ_T0014592.1 MGP_AJ_G0012687.1 mouse_genomes_project 4 68082207 68082644 + processed_pseudogene processed_pseudogene MGP_AJ_T0065804.1 MGP_AJ_G0028260.1 mouse_genomes_project 4 50076123 50191542 + MGP_AJ_P0065804 Slc44a1 protein_coding protein_coding MGP_AJ_T0065805.1 MGP_AJ_G0028260.1 mouse_genomes_project 4 50076123 50258332 + MGP_AJ_P0065805 Slc44a1 protein_coding protein_coding MGP_AJ_T0065806.1 MGP_AJ_G0028260.1 mouse_genomes_project 4 50076297 50209658 + MGP_AJ_P0065806 Slc44a1 protein_coding protein_coding MGP_AJ_T0065807.1 MGP_AJ_G0028260.1 mouse_genomes_project 4 50076381 50169943 + Slc44a1 protein_coding processed_transcript MGP_AJ_T0065808.1 MGP_AJ_G0028260.1 mouse_genomes_project 4 50076394 50205300 + MGP_AJ_P0065808 Slc44a1 protein_coding protein_coding MGP_AJ_T0065809.1 MGP_AJ_G0028260.1 mouse_genomes_project 4 50237930 50257841 + Slc44a1 protein_coding processed_transcript MGP_AJ_T0004547.1 MGP_AJ_G0003947.1 mouse_genomes_project 4 127358919 127360839 - Gm26716 antisense antisense MGP_AJ_T0065945.1 MGP_AJ_G0028297.1 mouse_genomes_project 4 56133182 56209120 - MGP_AJ_P0065945 Ptbp3 protein_coding protein_coding MGP_AJ_T0065946.1 MGP_AJ_G0028297.1 mouse_genomes_project 4 56136570 56209249 - MGP_AJ_P0065946 Ptbp3 protein_coding protein_coding MGP_AJ_T0065947.1 MGP_AJ_G0028297.1 mouse_genomes_project 4 56138246 56145938 - Ptbp3 protein_coding retained_intron MGP_AJ_T0065948.1 MGP_AJ_G0028297.1 mouse_genomes_project 4 56141903 56153451 - MGP_AJ_P0065948 Ptbp3 protein_coding protein_coding MGP_AJ_T0065949.1 MGP_AJ_G0028297.1 mouse_genomes_project 4 56141908 56209217 - MGP_AJ_P0065949 Ptbp3 protein_coding nonsense_mediated_decay MGP_AJ_T0065950.1 MGP_AJ_G0028297.1 mouse_genomes_project 4 56153354 56209222 - MGP_AJ_P0065950 Ptbp3 protein_coding nonsense_mediated_decay MGP_AJ_T0065951.1 MGP_AJ_G0028297.1 mouse_genomes_project 4 56153404 56209230 - MGP_AJ_P0065951 Ptbp3 protein_coding protein_coding MGP_AJ_T0065952.1 MGP_AJ_G0028297.1 mouse_genomes_project 4 56160935 56174763 - Ptbp3 protein_coding retained_intron MGP_AJ_T0065953.1 MGP_AJ_G0028297.1 mouse_genomes_project 4 56177430 56208702 - MGP_AJ_P0065953 Ptbp3 protein_coding protein_coding MGP_AJ_T0014612.1 MGP_AJ_G0012707.1 mouse_genomes_project 4 73461318 73463771 + processed_pseudogene processed_pseudogene MGP_AJ_T0099021.1 MGP_AJ_G0036998.1 mouse_genomes_project 4 79320178 79322449 - Gm11267 sense_intronic sense_intronic MGP_AJ_T0064941.1 MGP_AJ_G0028066.1 mouse_genomes_project 4 28368378 28426254 + MGP_AJ_P0064941 Map3k7 protein_coding protein_coding MGP_AJ_T0064942.1 MGP_AJ_G0028066.1 mouse_genomes_project 4 28368521 28426260 + MGP_AJ_P0064942 Map3k7 protein_coding protein_coding MGP_AJ_T0064943.1 MGP_AJ_G0028066.1 mouse_genomes_project 4 28381600 28391571 + Map3k7 protein_coding processed_transcript MGP_AJ_T0064944.1 MGP_AJ_G0028066.1 mouse_genomes_project 4 28383835 28388598 + Map3k7 protein_coding processed_transcript MGP_AJ_T0064945.1 MGP_AJ_G0028066.1 mouse_genomes_project 4 28385906 28395589 + Map3k7 protein_coding processed_transcript MGP_AJ_T0064946.1 MGP_AJ_G0028066.1 mouse_genomes_project 4 28388543 28418807 + Map3k7 protein_coding processed_transcript MGP_AJ_T0064947.1 MGP_AJ_G0028066.1 mouse_genomes_project 4 28395286 28422359 + Map3k7 protein_coding processed_transcript MGP_AJ_T0064799.1 MGP_AJ_G0028025.1 mouse_genomes_project 4 11194724 11347000 - MGP_AJ_P0064799 Lrrc69 protein_coding protein_coding MGP_AJ_T0064800.1 MGP_AJ_G0028025.1 mouse_genomes_project 4 11225971 11309014 - Lrrc69 protein_coding processed_transcript MGP_AJ_T0064801.1 MGP_AJ_G0028025.1 mouse_genomes_project 4 11225971 11346992 - MGP_AJ_P0064801 Lrrc69 protein_coding protein_coding MGP_AJ_T0010576.1 MGP_AJ_G0008698.1 mouse_genomes_project 4 22294928 22295038 - Gm26067 miRNA miRNA MGP_AJ_T0065189.1 MGP_AJ_G0028127.1 mouse_genomes_project 4 38168395 38176767 - MGP_AJ_P0065189 Dctn3 protein_coding protein_coding MGP_AJ_T0065190.1 MGP_AJ_G0028127.1 mouse_genomes_project 4 38168395 38176760 - MGP_AJ_P0065190 Dctn3 protein_coding protein_coding MGP_AJ_T0065191.1 MGP_AJ_G0028127.1 mouse_genomes_project 4 38173367 38176734 - Dctn3 protein_coding processed_transcript MGP_AJ_T0004449.1 MGP_AJ_G0003874.1 mouse_genomes_project 4 41630145 41633506 + Gm12493 antisense antisense MGP_AJ_T0014623.1 MGP_AJ_G0012718.1 mouse_genomes_project 4 77213537 77214021 + processed_pseudogene processed_pseudogene MGP_AJ_T0004589.1 MGP_AJ_G0003980.1 mouse_genomes_project 4 146354473 146355288 - Gm15969 antisense antisense MGP_AJ_T0018095.1 MGP_AJ_G0015554.1 mouse_genomes_project 4 123686828 123690261 + Gm12940 processed_transcript processed_transcript MGP_AJ_T0018096.1 MGP_AJ_G0015554.1 mouse_genomes_project 4 123688545 123690261 + Gm12940 processed_transcript processed_transcript MGP_AJ_T0018097.1 MGP_AJ_G0015554.1 mouse_genomes_project 4 123688766 123703271 + Gm12940 processed_transcript processed_transcript MGP_AJ_T0018098.1 MGP_AJ_G0015554.1 mouse_genomes_project 4 123688867 123690199 + Gm12940 processed_transcript processed_transcript MGP_AJ_T0066104.1 MGP_AJ_G0028342.1 mouse_genomes_project 4 66986950 67181530 - MGP_AJ_P0066104 Cdk5rap2 protein_coding protein_coding MGP_AJ_T0066105.1 MGP_AJ_G0028342.1 mouse_genomes_project 4 66993121 67181505 - MGP_AJ_P0066105 Cdk5rap2 protein_coding nonsense_mediated_decay MGP_AJ_T0066106.1 MGP_AJ_G0028342.1 mouse_genomes_project 4 67008448 67041210 - MGP_AJ_P0066106 Cdk5rap2 protein_coding protein_coding MGP_AJ_T0066107.1 MGP_AJ_G0028342.1 mouse_genomes_project 4 67012569 67013951 - Cdk5rap2 protein_coding processed_transcript MGP_AJ_T0066108.1 MGP_AJ_G0028342.1 mouse_genomes_project 4 67170007 67174663 - Cdk5rap2 protein_coding processed_transcript MGP_AJ_T0068785.1 MGP_AJ_G0028940.1 mouse_genomes_project 4 134093459 134107289 - MGP_AJ_P0068785 Cela3b protein_coding protein_coding MGP_AJ_T0068786.1 MGP_AJ_G0028940.1 mouse_genomes_project 4 134093468 134095252 - Cela3b protein_coding processed_transcript MGP_AJ_T0018056.1 MGP_AJ_G0015528.1 mouse_genomes_project 4 70592120 70599247 + Gm11240 processed_transcript processed_transcript MGP_AJ_T0014406.1 MGP_AJ_G0012501.1 mouse_genomes_project 4 7328377 7329563 + processed_pseudogene processed_pseudogene MGP_AJ_T0014725.1 MGP_AJ_G0012820.1 mouse_genomes_project 4 113259090 113259537 + processed_pseudogene processed_pseudogene MGP_AJ_T0014509.1 MGP_AJ_G0012604.1 mouse_genomes_project 4 34702148 34702692 + processed_pseudogene processed_pseudogene MGP_AJ_T0014392.1 MGP_AJ_G0012487.1 mouse_genomes_project 4 2397482 2398454 - processed_pseudogene processed_pseudogene MGP_AJ_T0067563.1 MGP_AJ_G0028659.1 mouse_genomes_project 4 115881603 115912676 + MGP_AJ_P0067563 Zmynd12 protein_coding protein_coding MGP_AJ_T0067564.1 MGP_AJ_G0028659.1 mouse_genomes_project 4 115881661 115909009 + Zmynd12 protein_coding processed_transcript MGP_AJ_T0067565.1 MGP_AJ_G0028659.1 mouse_genomes_project 4 115903456 115926716 + Zmynd12 protein_coding processed_transcript MGP_AJ_T0014580.1 MGP_AJ_G0012675.1 mouse_genomes_project 4 61620116 61621330 - processed_pseudogene processed_pseudogene MGP_AJ_T0014558.1 MGP_AJ_G0012653.1 mouse_genomes_project 4 51297960 51298528 - processed_pseudogene processed_pseudogene MGP_AJ_T0014415.1 MGP_AJ_G0012510.1 mouse_genomes_project 4 8699884 8700290 - processed_pseudogene processed_pseudogene MGP_AJ_T0068577.1 MGP_AJ_G0028887.1 mouse_genomes_project 4 131097022 131111921 + MGP_AJ_P0068577 Paqr7 protein_coding protein_coding MGP_AJ_T0068578.1 MGP_AJ_G0028887.1 mouse_genomes_project 4 131097300 131110645 + MGP_AJ_P0068578 Paqr7 protein_coding protein_coding MGP_AJ_T0068579.1 MGP_AJ_G0028887.1 mouse_genomes_project 4 131097306 131110374 + MGP_AJ_P0068579 Paqr7 protein_coding protein_coding MGP_AJ_T0068580.1 MGP_AJ_G0028887.1 mouse_genomes_project 4 131097329 131113305 + MGP_AJ_P0068580 Paqr7 protein_coding protein_coding MGP_AJ_T0068581.1 MGP_AJ_G0028887.1 mouse_genomes_project 4 131097366 131110094 + Paqr7 protein_coding processed_transcript MGP_AJ_T0064777.1 MGP_AJ_G0028020.1 mouse_genomes_project 4 8656082 8746330 - MGP_AJ_P0064777 Fam92a protein_coding protein_coding MGP_AJ_T0064778.1 MGP_AJ_G0028020.1 mouse_genomes_project 4 8656211 8746330 - MGP_AJ_P0064778 Fam92a protein_coding protein_coding MGP_AJ_T0064779.1 MGP_AJ_G0028020.1 mouse_genomes_project 4 8656212 8746310 - MGP_AJ_P0064779 Fam92a protein_coding protein_coding MGP_AJ_T0064780.1 MGP_AJ_G0028020.1 mouse_genomes_project 4 8656345 8735240 - Fam92a protein_coding processed_transcript MGP_AJ_T0064782.1 MGP_AJ_G0028020.1 mouse_genomes_project 4 8729746 8745483 - MGP_AJ_P0064782 Fam92a protein_coding protein_coding MGP_AJ_T0064783.1 MGP_AJ_G0028020.1 mouse_genomes_project 4 8738308 8746186 - MGP_AJ_P0064783 Fam92a protein_coding nonsense_mediated_decay MGP_AJ_T0064784.1 MGP_AJ_G0028020.1 mouse_genomes_project 4 8739532 8746310 - Fam92a protein_coding retained_intron MGP_AJ_T0064785.1 MGP_AJ_G0028020.1 mouse_genomes_project 4 8739799 8746049 - Fam92a protein_coding retained_intron MGP_AJ_T0068012.1 MGP_AJ_G0028773.1 mouse_genomes_project 4 125810646 125818220 + MGP_AJ_P0068012 Fndc5 protein_coding protein_coding MGP_AJ_T0102602.1 MGP_AJ_G0040344.1 mouse_genomes_project 4 110427148 110428158 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0004527.1 MGP_AJ_G0003933.1 mouse_genomes_project 4 120262534 120265391 + Gm12925 antisense antisense MGP_AJ_T0004528.1 MGP_AJ_G0003933.1 mouse_genomes_project 4 120264107 120267872 + Gm12925 antisense antisense MGP_AJ_T0004529.1 MGP_AJ_G0003933.1 mouse_genomes_project 4 120264269 120267879 + Gm12925 antisense antisense MGP_AJ_T0069912.1 MGP_AJ_G0029196.1 mouse_genomes_project 4 153449327 153450788 + MGP_AJ_P0069912 Aurkaip1 protein_coding protein_coding MGP_AJ_T0069913.1 MGP_AJ_G0029196.1 mouse_genomes_project 4 153449406 153451180 + MGP_AJ_P0069913 Aurkaip1 protein_coding protein_coding MGP_AJ_T0069914.1 MGP_AJ_G0029196.1 mouse_genomes_project 4 153449668 153450514 + Aurkaip1 protein_coding retained_intron MGP_AJ_T0069915.1 MGP_AJ_G0029196.1 mouse_genomes_project 4 153449708 153451111 + MGP_AJ_P0069915 Aurkaip1 protein_coding protein_coding MGP_AJ_T0069916.1 MGP_AJ_G0029196.1 mouse_genomes_project 4 153449714 153450578 + Aurkaip1 protein_coding processed_transcript MGP_AJ_T0069917.1 MGP_AJ_G0029196.1 mouse_genomes_project 4 153449718 153451081 + MGP_AJ_P0069917 Aurkaip1 protein_coding protein_coding MGP_AJ_T0067799.1 MGP_AJ_G0028724.1 mouse_genomes_project 4 121724107 121733524 - MGP_AJ_P0067799 Zc3h12a protein_coding protein_coding MGP_AJ_T0067800.1 MGP_AJ_G0028724.1 mouse_genomes_project 4 121725777 121728204 - Zc3h12a protein_coding retained_intron MGP_AJ_T0099949.1 MGP_AJ_G0037915.1 mouse_genomes_project 4 113431056 113431155 + Gm22335 snRNA snRNA MGP_AJ_T0099963.1 MGP_AJ_G0037929.1 mouse_genomes_project 4 128824231 128824365 - Rnu11 snRNA snRNA MGP_AJ_T0067652.1 MGP_AJ_G0028683.1 mouse_genomes_project 4 117787412 117800470 - MGP_AJ_P0067652 Gm12888 protein_coding protein_coding MGP_AJ_T0064786.1 MGP_AJ_G0028022.1 mouse_genomes_project 4 9463811 9534295 + MGP_AJ_P0064786 Triqk protein_coding protein_coding MGP_AJ_T0064787.1 MGP_AJ_G0028022.1 mouse_genomes_project 4 9463831 9536919 + MGP_AJ_P0064787 Triqk protein_coding protein_coding MGP_AJ_T0064788.1 MGP_AJ_G0028022.1 mouse_genomes_project 4 9475071 9534492 + Triqk protein_coding processed_transcript MGP_AJ_T0007831.1 MGP_AJ_G0006398.1 mouse_genomes_project 4 33372393 33407566 + Gm12371 lincRNA lincRNA MGP_AJ_T0067377.1 MGP_AJ_G0028614.1 mouse_genomes_project 4 114137655 114140116 + MGP_AJ_P0067377 Gm12845 protein_coding protein_coding MGP_AJ_T0014645.1 MGP_AJ_G0012740.1 mouse_genomes_project 4 87162487 87164192 - processed_pseudogene processed_pseudogene MGP_AJ_T0004534.1 MGP_AJ_G0003937.1 mouse_genomes_project 4 121491549 121495441 - 1700125G02Rik antisense antisense MGP_AJ_T0069246.1 MGP_AJ_G0029074.1 mouse_genomes_project 4 145279830 145311377 - MGP_AJ_P0069246 Mfn2 protein_coding protein_coding MGP_AJ_T0069247.1 MGP_AJ_G0029074.1 mouse_genomes_project 4 145279830 145311394 - MGP_AJ_P0069247 Mfn2 protein_coding protein_coding MGP_AJ_T0069248.1 MGP_AJ_G0029074.1 mouse_genomes_project 4 145280247 145311388 - MGP_AJ_P0069248 Mfn2 protein_coding protein_coding MGP_AJ_T0069249.1 MGP_AJ_G0029074.1 mouse_genomes_project 4 145281620 145311435 - MGP_AJ_P0069249 Mfn2 protein_coding unknown_likely_coding MGP_AJ_T0069250.1 MGP_AJ_G0029074.1 mouse_genomes_project 4 145287525 145311388 - MGP_AJ_P0069250 Mfn2 protein_coding protein_coding MGP_AJ_T0069251.1 MGP_AJ_G0029074.1 mouse_genomes_project 4 145291739 145293555 - Mfn2 protein_coding processed_transcript MGP_AJ_T0069252.1 MGP_AJ_G0029074.1 mouse_genomes_project 4 145293365 145310085 - MGP_AJ_P0069252 Mfn2 protein_coding protein_coding MGP_AJ_T0069253.1 MGP_AJ_G0029074.1 mouse_genomes_project 4 145301236 145311348 - MGP_AJ_P0069253 Mfn2 protein_coding protein_coding MGP_AJ_T0004549.1 MGP_AJ_G0003949.1 mouse_genomes_project 4 129095434 129096349 + Gm12999 antisense antisense MGP_AJ_T0065062.1 MGP_AJ_G0028096.1 mouse_genomes_project 4 32112448 32249931 - MGP_AJ_P0065062 Lingo2 protein_coding protein_coding MGP_AJ_T0065063.1 MGP_AJ_G0028096.1 mouse_genomes_project 4 32113207 33370651 - MGP_AJ_P0065063 Lingo2 protein_coding protein_coding MGP_AJ_T0065064.1 MGP_AJ_G0028096.1 mouse_genomes_project 4 32113207 32540982 - MGP_AJ_P0065064 Lingo2 protein_coding protein_coding MGP_AJ_T0065065.1 MGP_AJ_G0028096.1 mouse_genomes_project 4 32113207 32249931 - MGP_AJ_P0065065 Lingo2 protein_coding protein_coding MGP_AJ_T0065066.1 MGP_AJ_G0028096.1 mouse_genomes_project 4 32113644 32460271 - MGP_AJ_P0065066 Lingo2 protein_coding protein_coding MGP_AJ_T0065067.1 MGP_AJ_G0028096.1 mouse_genomes_project 4 32460268 33369914 - Lingo2 protein_coding processed_transcript MGP_AJ_T0065068.1 MGP_AJ_G0028096.1 mouse_genomes_project 4 33129909 33371172 - Lingo2 protein_coding processed_transcript MGP_AJ_T0065069.1 MGP_AJ_G0028096.1 mouse_genomes_project 4 33132646 33369895 - Lingo2 protein_coding processed_transcript MGP_AJ_T0065070.1 MGP_AJ_G0028096.1 mouse_genomes_project 4 33132891 33369917 - Lingo2 protein_coding processed_transcript MGP_AJ_T0065071.1 MGP_AJ_G0028096.1 mouse_genomes_project 4 33370527 33371175 - Lingo2 protein_coding processed_transcript MGP_AJ_T0065835.1 MGP_AJ_G0028268.1 mouse_genomes_project 4 53379748 53381187 - MGP_AJ_P0065835 Actl7b protein_coding protein_coding MGP_AJ_T0014444.1 MGP_AJ_G0012539.1 mouse_genomes_project 4 17519057 17520118 - processed_pseudogene processed_pseudogene MGP_AJ_T0101224.1 MGP_AJ_G0039190.1 mouse_genomes_project 4 69897249 69897376 + Gm25769 snoRNA snoRNA MGP_AJ_T0065487.1 MGP_AJ_G0028182.1 mouse_genomes_project 4 40458595 40459552 - MGP_AJ_P0065487 Olfr156 protein_coding protein_coding MGP_AJ_T0065785.1 MGP_AJ_G0028251.1 mouse_genomes_project 4 49125347 49125653 - MGP_AJ_P0065785 Vma21-ps protein_coding protein_coding MGP_AJ_T0067568.1 MGP_AJ_G0028661.1 mouse_genomes_project 4 115992624 116000864 - MGP_AJ_P0067568 AA415398 protein_coding protein_coding MGP_AJ_T0067569.1 MGP_AJ_G0028661.1 mouse_genomes_project 4 115993755 115997342 - AA415398 protein_coding processed_transcript MGP_AJ_T0067570.1 MGP_AJ_G0028661.1 mouse_genomes_project 4 115993982 116001229 - AA415398 protein_coding processed_transcript MGP_AJ_T0067571.1 MGP_AJ_G0028661.1 mouse_genomes_project 4 115995639 116001628 - AA415398 protein_coding processed_transcript MGP_AJ_T0014501.1 MGP_AJ_G0012596.1 mouse_genomes_project 4 31816542 31816976 + processed_pseudogene processed_pseudogene MGP_AJ_T0007918.1 MGP_AJ_G0006472.1 mouse_genomes_project 4 100085765 100107256 + 4930456L15Rik lincRNA lincRNA MGP_AJ_T0069215.1 MGP_AJ_G0029066.1 mouse_genomes_project 4 141888396 141897762 - MGP_AJ_P0069215 Gm438 protein_coding protein_coding MGP_AJ_T0066346.1 MGP_AJ_G0028392.1 mouse_genomes_project 4 85504492 85508666 - MGP_AJ_P0066346 Klhl9 protein_coding protein_coding MGP_AJ_T0099025.1 MGP_AJ_G0037002.1 mouse_genomes_project 4 105323367 105326414 + Gm12737 sense_intronic sense_intronic MGP_AJ_T0101267.1 MGP_AJ_G0039233.1 mouse_genomes_project 4 133683839 133683968 + Gm23834 snoRNA snoRNA MGP_AJ_T0014452.1 MGP_AJ_G0012547.1 mouse_genomes_project 4 19982108 19983309 + processed_pseudogene processed_pseudogene MGP_AJ_T0014416.1 MGP_AJ_G0012511.1 mouse_genomes_project 4 10000247 10000619 + processed_pseudogene processed_pseudogene MGP_AJ_T0014479.1 MGP_AJ_G0012574.1 mouse_genomes_project 4 25661501 25662222 + processed_pseudogene processed_pseudogene MGP_AJ_T0069208.1 MGP_AJ_G0029059.1 mouse_genomes_project 4 141536457 141536766 - MGP_AJ_P0069208 Gm9944 protein_coding protein_coding MGP_AJ_T0007859.1 MGP_AJ_G0006421.1 mouse_genomes_project 4 52078280 52095027 - Gm12510 lincRNA lincRNA MGP_AJ_T0014502.1 MGP_AJ_G0012597.1 mouse_genomes_project 4 31847021 31847589 + processed_pseudogene processed_pseudogene MGP_AJ_T0014619.1 MGP_AJ_G0012714.1 mouse_genomes_project 4 76627736 76628139 + processed_pseudogene processed_pseudogene MGP_AJ_T0065241.1 MGP_AJ_G0028137.1 mouse_genomes_project 4 38226495 38228236 - MGP_AJ_P0065241 protein_coding protein_coding MGP_AJ_T0065242.1 MGP_AJ_G0028137.1 mouse_genomes_project 4 38226495 38227188 - MGP_AJ_P0065242 protein_coding protein_coding MGP_AJ_T0101245.1 MGP_AJ_G0039211.1 mouse_genomes_project 4 113566087 113566164 - Snord55 snoRNA snoRNA MGP_AJ_T0014498.1 MGP_AJ_G0012593.1 mouse_genomes_project 4 31272040 31272708 + processed_pseudogene processed_pseudogene MGP_AJ_T0004475.1 MGP_AJ_G0003897.1 mouse_genomes_project 4 91698624 91755593 + Gm12694 antisense antisense MGP_AJ_T0101215.1 MGP_AJ_G0039181.1 mouse_genomes_project 4 53402058 53402178 - Gm22952 snoRNA snoRNA MGP_AJ_T0066057.1 MGP_AJ_G0028328.1 mouse_genomes_project 4 60130231 60167497 - MGP_AJ_P0066057 Akna protein_coding protein_coding MGP_AJ_T0066058.1 MGP_AJ_G0028328.1 mouse_genomes_project 4 60144075 60145355 - Akna protein_coding processed_transcript MGP_AJ_T0014393.1 MGP_AJ_G0012488.1 mouse_genomes_project 4 2610901 2611655 + processed_pseudogene processed_pseudogene MGP_AJ_T0014663.1 MGP_AJ_G0012758.1 mouse_genomes_project 4 92287971 92288300 - processed_pseudogene processed_pseudogene MGP_AJ_T0067236.1 MGP_AJ_G0028589.1 mouse_genomes_project 4 112995539 112999087 + Ccdc17 protein_coding processed_transcript MGP_AJ_T0067237.1 MGP_AJ_G0028589.1 mouse_genomes_project 4 112995615 112999152 + MGP_AJ_P0067237 Ccdc17 protein_coding protein_coding MGP_AJ_T0067238.1 MGP_AJ_G0028589.1 mouse_genomes_project 4 112995688 112997086 + Ccdc17 protein_coding processed_transcript MGP_AJ_T0067239.1 MGP_AJ_G0028589.1 mouse_genomes_project 4 112996645 112999108 + Ccdc17 protein_coding processed_transcript MGP_AJ_T0067240.1 MGP_AJ_G0028589.1 mouse_genomes_project 4 112997377 112998050 + Ccdc17 protein_coding processed_transcript MGP_AJ_T0014819.1 MGP_AJ_G0012914.1 mouse_genomes_project 4 140631137 140636736 + processed_pseudogene processed_pseudogene MGP_AJ_T0001430.1 MGP_AJ_G0001351.1 mouse_genomes_project 4 139600015 139600234 + TEC TEC MGP_AJ_T0069871.1 MGP_AJ_G0029186.1 mouse_genomes_project 4 153276470 153279773 - Mib2 protein_coding processed_transcript MGP_AJ_T0069872.1 MGP_AJ_G0029186.1 mouse_genomes_project 4 153276475 153288887 - Mib2 protein_coding processed_transcript MGP_AJ_T0069873.1 MGP_AJ_G0029186.1 mouse_genomes_project 4 153276475 153291567 - MGP_AJ_P0069873 Mib2 protein_coding protein_coding MGP_AJ_T0069874.1 MGP_AJ_G0029186.1 mouse_genomes_project 4 153276476 153278521 - Mib2 protein_coding processed_transcript MGP_AJ_T0069875.1 MGP_AJ_G0029186.1 mouse_genomes_project 4 153277631 153278521 - Mib2 protein_coding processed_transcript MGP_AJ_T0069876.1 MGP_AJ_G0029186.1 mouse_genomes_project 4 153278736 153281377 - MGP_AJ_P0069876 Mib2 protein_coding protein_coding MGP_AJ_T0069877.1 MGP_AJ_G0029186.1 mouse_genomes_project 4 153279417 153280133 - Mib2 protein_coding processed_transcript MGP_AJ_T0069878.1 MGP_AJ_G0029186.1 mouse_genomes_project 4 153283113 153291566 - Mib2 protein_coding processed_transcript MGP_AJ_T0069879.1 MGP_AJ_G0029186.1 mouse_genomes_project 4 153288824 153291562 - Mib2 protein_coding processed_transcript MGP_AJ_T0018067.1 MGP_AJ_G0015537.1 mouse_genomes_project 4 92220595 92224044 + Gm12707 processed_transcript processed_transcript MGP_AJ_T0065312.1 MGP_AJ_G0028155.1 mouse_genomes_project 4 39668762 39672778 - MGP_AJ_P0065312 Stoml2 protein_coding protein_coding MGP_AJ_T0065313.1 MGP_AJ_G0028155.1 mouse_genomes_project 4 39669098 39670906 - Stoml2 protein_coding processed_transcript MGP_AJ_T0065314.1 MGP_AJ_G0028155.1 mouse_genomes_project 4 39669114 39670983 - Stoml2 protein_coding processed_transcript MGP_AJ_T0065315.1 MGP_AJ_G0028155.1 mouse_genomes_project 4 39669301 39672524 - MGP_AJ_P0065315 Stoml2 protein_coding protein_coding MGP_AJ_T0065316.1 MGP_AJ_G0028155.1 mouse_genomes_project 4 39669313 39671662 - MGP_AJ_P0065316 Stoml2 protein_coding protein_coding MGP_AJ_T0065317.1 MGP_AJ_G0028155.1 mouse_genomes_project 4 39670632 39672518 - Stoml2 protein_coding processed_transcript MGP_AJ_T0065318.1 MGP_AJ_G0028155.1 mouse_genomes_project 4 39670665 39672438 - MGP_AJ_P0065318 Stoml2 protein_coding protein_coding MGP_AJ_T0065319.1 MGP_AJ_G0028155.1 mouse_genomes_project 4 39670683 39671568 - Stoml2 protein_coding processed_transcript MGP_AJ_T0065320.1 MGP_AJ_G0028155.1 mouse_genomes_project 4 39670841 39671669 - Stoml2 protein_coding processed_transcript MGP_AJ_T0065321.1 MGP_AJ_G0028155.1 mouse_genomes_project 4 39671109 39672426 - Stoml2 protein_coding processed_transcript MGP_AJ_T0065322.1 MGP_AJ_G0028155.1 mouse_genomes_project 4 39671561 39672504 - Stoml2 protein_coding processed_transcript MGP_AJ_T0014820.1 MGP_AJ_G0012915.1 mouse_genomes_project 4 141582164 141582713 - processed_pseudogene processed_pseudogene MGP_AJ_T0067330.1 MGP_AJ_G0028606.1 mouse_genomes_project 4 113539691 113544909 - MGP_AJ_P0067330 Plk3 protein_coding protein_coding MGP_AJ_T0067331.1 MGP_AJ_G0028606.1 mouse_genomes_project 4 113539699 113544989 - Plk3 protein_coding processed_transcript MGP_AJ_T0101196.1 MGP_AJ_G0039162.1 mouse_genomes_project 4 30442474 30442561 + Gm22010 snoRNA snoRNA MGP_AJ_T0014530.1 MGP_AJ_G0012625.1 mouse_genomes_project 4 42999953 43000364 + processed_pseudogene processed_pseudogene MGP_AJ_T0099940.1 MGP_AJ_G0037906.1 mouse_genomes_project 4 104847004 104847108 - Gm23354 snRNA snRNA MGP_AJ_T0066776.1 MGP_AJ_G0028498.1 mouse_genomes_project 4 104043169 104063318 - MGP_AJ_P0066776 Lrrc42 protein_coding protein_coding MGP_AJ_T0066777.1 MGP_AJ_G0028498.1 mouse_genomes_project 4 104043172 104053318 - Lrrc42 protein_coding retained_intron MGP_AJ_T0066778.1 MGP_AJ_G0028498.1 mouse_genomes_project 4 104043412 104045634 - Lrrc42 protein_coding retained_intron MGP_AJ_T0066779.1 MGP_AJ_G0028498.1 mouse_genomes_project 4 104043592 104049544 - MGP_AJ_P0066779 Lrrc42 protein_coding protein_coding MGP_AJ_T0066780.1 MGP_AJ_G0028498.1 mouse_genomes_project 4 104057198 104062946 - MGP_AJ_P0066780 Lrrc42 protein_coding protein_coding MGP_AJ_T0067355.1 MGP_AJ_G0028611.1 mouse_genomes_project 4 113676831 113694641 - MGP_AJ_P0067355 Rnf220 protein_coding protein_coding MGP_AJ_T0067356.1 MGP_AJ_G0028611.1 mouse_genomes_project 4 113676839 113917689 - MGP_AJ_P0067356 Rnf220 protein_coding protein_coding MGP_AJ_T0067357.1 MGP_AJ_G0028611.1 mouse_genomes_project 4 113677303 113782181 - MGP_AJ_P0067357 Rnf220 protein_coding protein_coding MGP_AJ_T0067358.1 MGP_AJ_G0028611.1 mouse_genomes_project 4 113681895 113690855 - Rnf220 protein_coding processed_transcript MGP_AJ_T0067359.1 MGP_AJ_G0028611.1 mouse_genomes_project 4 113682803 113695215 - MGP_AJ_P0067359 Rnf220 protein_coding protein_coding MGP_AJ_T0067360.1 MGP_AJ_G0028611.1 mouse_genomes_project 4 113690472 113694827 - Rnf220 protein_coding processed_transcript MGP_AJ_T0067361.1 MGP_AJ_G0028611.1 mouse_genomes_project 4 113690759 113694496 - Rnf220 protein_coding processed_transcript MGP_AJ_T0067362.1 MGP_AJ_G0028611.1 mouse_genomes_project 4 113691269 113705374 - Rnf220 protein_coding processed_transcript MGP_AJ_T0067363.1 MGP_AJ_G0028611.1 mouse_genomes_project 4 113711396 113917586 - Rnf220 protein_coding processed_transcript MGP_AJ_T0067364.1 MGP_AJ_G0028611.1 mouse_genomes_project 4 113910876 113915655 - Rnf220 protein_coding processed_transcript MGP_AJ_T0011574.1 MGP_AJ_G0009696.1 mouse_genomes_project 4 91176591 91176853 - Gm26410 misc_RNA misc_RNA MGP_AJ_T0010636.1 MGP_AJ_G0008758.1 mouse_genomes_project 4 134861909 134861993 + Mir6399 miRNA miRNA MGP_AJ_T0008011.1 MGP_AJ_G0006534.1 mouse_genomes_project 4 136094832 136098663 - 2700016F22Rik lincRNA lincRNA MGP_AJ_T0068572.1 MGP_AJ_G0028886.1 mouse_genomes_project 4 131067672 131073406 + MGP_AJ_P0068572 Stmn1 protein_coding protein_coding MGP_AJ_T0068573.1 MGP_AJ_G0028886.1 mouse_genomes_project 4 131067751 131070039 + Stmn1 protein_coding processed_transcript MGP_AJ_T0068574.1 MGP_AJ_G0028886.1 mouse_genomes_project 4 131067758 131072489 + MGP_AJ_P0068574 Stmn1 protein_coding protein_coding MGP_AJ_T0068575.1 MGP_AJ_G0028886.1 mouse_genomes_project 4 131067761 131073228 + MGP_AJ_P0068575 Stmn1 protein_coding protein_coding MGP_AJ_T0068576.1 MGP_AJ_G0028886.1 mouse_genomes_project 4 131069097 131073063 + MGP_AJ_P0068576 Stmn1 protein_coding protein_coding MGP_AJ_T0014682.1 MGP_AJ_G0012777.1 mouse_genomes_project 4 98166949 98212380 + processed_pseudogene processed_pseudogene MGP_AJ_T0001413.1 MGP_AJ_G0001336.1 mouse_genomes_project 4 44499994 44602136 - TEC TEC MGP_AJ_T0064840.1 MGP_AJ_G0028043.1 mouse_genomes_project 4 16427704 16477837 - MGP_AJ_P0064840 Atp6v0d2 protein_coding protein_coding MGP_AJ_T0064841.1 MGP_AJ_G0028043.1 mouse_genomes_project 4 16441714 16472173 - MGP_AJ_P0064841 Atp6v0d2 protein_coding protein_coding MGP_AJ_T0101189.1 MGP_AJ_G0039155.1 mouse_genomes_project 4 10794952 10795079 + Gm24908 snoRNA snoRNA MGP_AJ_T0069515.1 MGP_AJ_G0029125.1 mouse_genomes_project 4 148507441 148512155 + MGP_AJ_P0069515 Uts2 protein_coding protein_coding MGP_AJ_T0070017.1 MGP_AJ_G0029216.1 mouse_genomes_project 4 153827556 153834631 - MGP_AJ_P0070017 Plekhn1 protein_coding protein_coding MGP_AJ_T0070018.1 MGP_AJ_G0029216.1 mouse_genomes_project 4 153827879 153834580 - MGP_AJ_P0070018 Plekhn1 protein_coding unknown_likely_coding MGP_AJ_T0065119.1 MGP_AJ_G0028109.1 mouse_genomes_project 4 37392134 37408976 + MGP_AJ_P0065119 Chmp5 protein_coding protein_coding MGP_AJ_T0069127.1 MGP_AJ_G0029020.1 mouse_genomes_project 4 138598890 138632541 - MGP_AJ_P0069127 Ctrc protein_coding nonsense_mediated_decay MGP_AJ_T0069129.1 MGP_AJ_G0029020.1 mouse_genomes_project 4 138622137 138632635 - Ctrc protein_coding processed_transcript MGP_AJ_T0069130.1 MGP_AJ_G0029020.1 mouse_genomes_project 4 138622137 138632561 - MGP_AJ_P0069130 Ctrc protein_coding protein_coding MGP_AJ_T0069131.1 MGP_AJ_G0029020.1 mouse_genomes_project 4 138622142 138632637 - MGP_AJ_P0069131 Ctrc protein_coding protein_coding MGP_AJ_T0069132.1 MGP_AJ_G0029020.1 mouse_genomes_project 4 138631117 138631510 - Ctrc protein_coding processed_transcript MGP_AJ_T0007967.1 MGP_AJ_G0006506.1 mouse_genomes_project 4 125721800 125729666 - 1700086P04Rik lincRNA lincRNA MGP_AJ_T0065127.1 MGP_AJ_G0028111.1 mouse_genomes_project 4 37476841 37489872 - MGP_AJ_P0065127 Aqp7 protein_coding protein_coding MGP_AJ_T0065128.1 MGP_AJ_G0028111.1 mouse_genomes_project 4 37476841 37492563 - MGP_AJ_P0065128 Aqp7 protein_coding protein_coding MGP_AJ_T0065129.1 MGP_AJ_G0028111.1 mouse_genomes_project 4 37479346 37484854 - Aqp7 protein_coding processed_transcript MGP_AJ_T0065130.1 MGP_AJ_G0028111.1 mouse_genomes_project 4 37479588 37480763 - Aqp7 protein_coding processed_transcript MGP_AJ_T0014754.1 MGP_AJ_G0012849.1 mouse_genomes_project 4 119132474 119133624 + processed_pseudogene processed_pseudogene MGP_AJ_T0004441.1 MGP_AJ_G0003867.1 mouse_genomes_project 4 38086186 38088235 + Gm12406 antisense antisense MGP_AJ_T0066122.1 MGP_AJ_G0028346.1 mouse_genomes_project 4 69635449 69637501 - MGP_AJ_P0066122 Aldoart1 protein_coding protein_coding MGP_AJ_T0066123.1 MGP_AJ_G0028346.1 mouse_genomes_project 4 69635449 69637499 - MGP_AJ_P0066123 Aldoart1 protein_coding protein_coding MGP_AJ_T0014692.1 MGP_AJ_G0012787.1 mouse_genomes_project 4 102313491 102313942 + processed_pseudogene processed_pseudogene MGP_AJ_T0098799.1 MGP_AJ_G0036783.1 mouse_genomes_project 4 17755444 17755800 + Gm22817 ribozyme ribozyme MGP_AJ_T0014594.1 MGP_AJ_G0012689.1 mouse_genomes_project 4 68658126 68659116 + processed_pseudogene processed_pseudogene MGP_AJ_T0064897.1 MGP_AJ_G0028055.1 mouse_genomes_project 4 18967619 18973187 - MGP_AJ_P0064897 Pou3f2 protein_coding protein_coding MGP_AJ_T0066523.1 MGP_AJ_G0028441.1 mouse_genomes_project 4 95792628 95799745 + MGP_AJ_P0066523 Angptl3 protein_coding protein_coding MGP_AJ_T0066524.1 MGP_AJ_G0028441.1 mouse_genomes_project 4 95794853 95799639 + Angptl3 protein_coding processed_transcript MGP_AJ_T0066525.1 MGP_AJ_G0028441.1 mouse_genomes_project 4 95794877 95807791 + Angptl3 protein_coding processed_transcript MGP_AJ_T0068603.1 MGP_AJ_G0028894.1 mouse_genomes_project 4 131471763 131503880 + MGP_AJ_P0068603 Rhd protein_coding protein_coding MGP_AJ_T0068604.1 MGP_AJ_G0028894.1 mouse_genomes_project 4 131487444 131498054 + Rhd protein_coding retained_intron MGP_AJ_T0099958.1 MGP_AJ_G0037924.1 mouse_genomes_project 4 122829119 122829216 - Gm25323 snRNA snRNA MGP_AJ_T0101201.1 MGP_AJ_G0039167.1 mouse_genomes_project 4 37658834 37658915 - Gm24837 snoRNA snoRNA MGP_AJ_T0067729.1 MGP_AJ_G0028704.1 mouse_genomes_project 4 120435323 120438365 + MGP_AJ_P0067729 4933427I04Rik protein_coding protein_coding MGP_AJ_T0101230.1 MGP_AJ_G0039196.1 mouse_genomes_project 4 78087513 78087644 - Gm25803 snoRNA snoRNA MGP_AJ_T0018063.1 MGP_AJ_G0015534.1 mouse_genomes_project 4 91203686 91220054 - Gm12655 processed_transcript processed_transcript MGP_AJ_T0018064.1 MGP_AJ_G0015534.1 mouse_genomes_project 4 91204782 91220041 - Gm12655 processed_transcript processed_transcript MGP_AJ_T0007837.1 MGP_AJ_G0006404.1 mouse_genomes_project 4 38236949 38237354 + Gm21980 lincRNA lincRNA MGP_AJ_T0014611.1 MGP_AJ_G0012706.1 mouse_genomes_project 4 73165617 73166564 + processed_pseudogene processed_pseudogene MGP_AJ_T0014834.1 MGP_AJ_G0012929.1 mouse_genomes_project 4 148350635 148351659 + processed_pseudogene processed_pseudogene MGP_AJ_T0008016.1 MGP_AJ_G0006538.1 mouse_genomes_project 4 137114689 137119634 + Gm13016 lincRNA lincRNA MGP_AJ_T0068793.1 MGP_AJ_G0028944.1 mouse_genomes_project 4 134277405 134289050 + MGP_AJ_P0068793 Usp48 protein_coding protein_coding MGP_AJ_T0068794.1 MGP_AJ_G0028944.1 mouse_genomes_project 4 134277790 134343186 + MGP_AJ_P0068794 Usp48 protein_coding protein_coding MGP_AJ_T0068795.1 MGP_AJ_G0028944.1 mouse_genomes_project 4 134277857 134309770 + MGP_AJ_P0068795 Usp48 protein_coding protein_coding MGP_AJ_T0068796.1 MGP_AJ_G0028944.1 mouse_genomes_project 4 134277857 134343186 + MGP_AJ_P0068796 Usp48 protein_coding protein_coding MGP_AJ_T0068797.1 MGP_AJ_G0028944.1 mouse_genomes_project 4 134277878 134309770 + MGP_AJ_P0068797 Usp48 protein_coding protein_coding MGP_AJ_T0068798.1 MGP_AJ_G0028944.1 mouse_genomes_project 4 134303006 134309770 + MGP_AJ_P0068798 Usp48 protein_coding protein_coding MGP_AJ_T0068799.1 MGP_AJ_G0028944.1 mouse_genomes_project 4 134304246 134307861 + Usp48 protein_coding processed_transcript MGP_AJ_T0068800.1 MGP_AJ_G0028944.1 mouse_genomes_project 4 134305690 134317693 + Usp48 protein_coding processed_transcript MGP_AJ_T0068801.1 MGP_AJ_G0028944.1 mouse_genomes_project 4 134307861 134318127 + MGP_AJ_P0068801 Usp48 protein_coding protein_coding MGP_AJ_T0068802.1 MGP_AJ_G0028944.1 mouse_genomes_project 4 134309641 134343192 + Usp48 protein_coding processed_transcript MGP_AJ_T0068803.1 MGP_AJ_G0028944.1 mouse_genomes_project 4 134317866 134339918 + MGP_AJ_P0068803 Usp48 protein_coding protein_coding MGP_AJ_T0068804.1 MGP_AJ_G0028944.1 mouse_genomes_project 4 134317937 134321924 + MGP_AJ_P0068804 Usp48 protein_coding protein_coding MGP_AJ_T0068805.1 MGP_AJ_G0028944.1 mouse_genomes_project 4 134318341 134337587 + MGP_AJ_P0068805 Usp48 protein_coding protein_coding MGP_AJ_T0068806.1 MGP_AJ_G0028944.1 mouse_genomes_project 4 134328902 134339911 + MGP_AJ_P0068806 Usp48 protein_coding protein_coding MGP_AJ_T0068807.1 MGP_AJ_G0028944.1 mouse_genomes_project 4 134328987 134337421 + MGP_AJ_P0068807 Usp48 protein_coding protein_coding MGP_AJ_T0068808.1 MGP_AJ_G0028944.1 mouse_genomes_project 4 134334871 134340994 + MGP_AJ_P0068808 Usp48 protein_coding protein_coding MGP_AJ_T0068809.1 MGP_AJ_G0028944.1 mouse_genomes_project 4 134342052 134343185 + Usp48 protein_coding processed_transcript MGP_AJ_T0014839.1 MGP_AJ_G0012934.1 mouse_genomes_project 4 151650564 151650670 - processed_pseudogene processed_pseudogene MGP_AJ_T0069810.1 MGP_AJ_G0029176.1 mouse_genomes_project 4 152872086 152975155 - MGP_AJ_P0069810 Prkcz protein_coding protein_coding MGP_AJ_T0069811.1 MGP_AJ_G0029176.1 mouse_genomes_project 4 152874073 152880309 - Prkcz protein_coding processed_transcript MGP_AJ_T0069812.1 MGP_AJ_G0029176.1 mouse_genomes_project 4 152883112 152885022 - Prkcz protein_coding processed_transcript MGP_AJ_T0069813.1 MGP_AJ_G0029176.1 mouse_genomes_project 4 152902234 152959392 - MGP_AJ_P0069813 Prkcz protein_coding protein_coding MGP_AJ_T0069814.1 MGP_AJ_G0029176.1 mouse_genomes_project 4 152902234 152959175 - MGP_AJ_P0069814 Prkcz protein_coding protein_coding MGP_AJ_T0069815.1 MGP_AJ_G0029176.1 mouse_genomes_project 4 152902237 152959272 - Prkcz protein_coding processed_transcript MGP_AJ_T0069816.1 MGP_AJ_G0029176.1 mouse_genomes_project 4 152905998 152912915 - Prkcz protein_coding processed_transcript MGP_AJ_T0069817.1 MGP_AJ_G0029176.1 mouse_genomes_project 4 152906073 152958750 - Prkcz protein_coding processed_transcript MGP_AJ_T0069818.1 MGP_AJ_G0029176.1 mouse_genomes_project 4 152970106 152975273 - MGP_AJ_P0069818 Prkcz protein_coding protein_coding MGP_AJ_T0068670.1 MGP_AJ_G0028909.1 mouse_genomes_project 4 132471857 132486847 + MGP_AJ_P0068670 Srsf10 protein_coding protein_coding MGP_AJ_T0068671.1 MGP_AJ_G0028909.1 mouse_genomes_project 4 132471857 132485323 + MGP_AJ_P0068671 Srsf10 protein_coding protein_coding MGP_AJ_T0068672.1 MGP_AJ_G0028909.1 mouse_genomes_project 4 132471988 132485323 + Srsf10 protein_coding processed_transcript MGP_AJ_T0068673.1 MGP_AJ_G0028909.1 mouse_genomes_project 4 132472222 132475100 + Srsf10 protein_coding processed_transcript MGP_AJ_T0068674.1 MGP_AJ_G0028909.1 mouse_genomes_project 4 132472242 132475530 + Srsf10 protein_coding processed_transcript MGP_AJ_T0068675.1 MGP_AJ_G0028909.1 mouse_genomes_project 4 132478082 132479918 + Srsf10 protein_coding processed_transcript MGP_AJ_T0068676.1 MGP_AJ_G0028909.1 mouse_genomes_project 4 132478114 132479990 + Srsf10 protein_coding processed_transcript MGP_AJ_T0018118.1 MGP_AJ_G0015565.1 mouse_genomes_project 4 153664120 153671241 - Gm13648 processed_transcript processed_transcript MGP_AJ_T0066449.1 MGP_AJ_G0028424.1 mouse_genomes_project 4 92904445 92940571 - MGP_AJ_P0066449 Cyp2j7 protein_coding protein_coding MGP_AJ_T0065290.1 MGP_AJ_G0028152.1 mouse_genomes_project 4 39618609 39640368 - MGP_AJ_P0065290 Vcp protein_coding unknown_likely_coding MGP_AJ_T0065291.1 MGP_AJ_G0028152.1 mouse_genomes_project 4 39618614 39640269 - MGP_AJ_P0065291 Vcp protein_coding protein_coding MGP_AJ_T0065292.1 MGP_AJ_G0028152.1 mouse_genomes_project 4 39623644 39625100 - Vcp protein_coding processed_transcript MGP_AJ_T0065293.1 MGP_AJ_G0028152.1 mouse_genomes_project 4 39625521 39628611 - Vcp protein_coding processed_transcript MGP_AJ_T0065294.1 MGP_AJ_G0028152.1 mouse_genomes_project 4 39631955 39632979 - Vcp protein_coding processed_transcript MGP_AJ_T0065295.1 MGP_AJ_G0028152.1 mouse_genomes_project 4 39632932 39640195 - Vcp protein_coding processed_transcript MGP_AJ_T0004619.1 MGP_AJ_G0004003.1 mouse_genomes_project 4 153379304 153387222 + Atad3aos antisense antisense MGP_AJ_T0004620.1 MGP_AJ_G0004003.1 mouse_genomes_project 4 153379318 153380394 + Atad3aos antisense antisense MGP_AJ_T0004621.1 MGP_AJ_G0004003.1 mouse_genomes_project 4 153379336 153381683 + Atad3aos antisense antisense MGP_AJ_T0004622.1 MGP_AJ_G0004003.1 mouse_genomes_project 4 153379347 153381694 + Atad3aos antisense antisense MGP_AJ_T0102578.1 MGP_AJ_G0040320.1 mouse_genomes_project 4 38253879 39337631 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0014560.1 MGP_AJ_G0012655.1 mouse_genomes_project 4 51742201 51742562 + processed_pseudogene processed_pseudogene MGP_AJ_T0069536.1 MGP_AJ_G0029129.1 mouse_genomes_project 4 149463660 149513812 + MGP_AJ_P0069536 Dnajc11 protein_coding protein_coding MGP_AJ_T0069537.1 MGP_AJ_G0029129.1 mouse_genomes_project 4 149463700 149508295 + Dnajc11 protein_coding retained_intron MGP_AJ_T0069538.1 MGP_AJ_G0029129.1 mouse_genomes_project 4 149463703 149488288 + Dnajc11 protein_coding retained_intron MGP_AJ_T0069539.1 MGP_AJ_G0029129.1 mouse_genomes_project 4 149463708 149512893 + Dnajc11 protein_coding retained_intron MGP_AJ_T0069540.1 MGP_AJ_G0029129.1 mouse_genomes_project 4 149463713 149512897 + MGP_AJ_P0069540 Dnajc11 protein_coding nonsense_mediated_decay MGP_AJ_T0069541.1 MGP_AJ_G0029129.1 mouse_genomes_project 4 149477040 149500046 + MGP_AJ_P0069541 Dnajc11 protein_coding protein_coding MGP_AJ_T0069542.1 MGP_AJ_G0029129.1 mouse_genomes_project 4 149487935 149503029 + Dnajc11 protein_coding processed_transcript MGP_AJ_T0069543.1 MGP_AJ_G0029129.1 mouse_genomes_project 4 149499267 149505771 + Dnajc11 protein_coding processed_transcript MGP_AJ_T0069544.1 MGP_AJ_G0029129.1 mouse_genomes_project 4 149501232 149508656 + Dnajc11 protein_coding retained_intron MGP_AJ_T0069545.1 MGP_AJ_G0029129.1 mouse_genomes_project 4 149501301 149503026 + Dnajc11 protein_coding retained_intron MGP_AJ_T0069546.1 MGP_AJ_G0029129.1 mouse_genomes_project 4 149510658 149512411 + Dnajc11 protein_coding retained_intron MGP_AJ_T0069547.1 MGP_AJ_G0029129.1 mouse_genomes_project 4 149511417 149512902 + Dnajc11 protein_coding retained_intron MGP_AJ_T0014622.1 MGP_AJ_G0012717.1 mouse_genomes_project 4 76773699 76775568 + processed_pseudogene processed_pseudogene MGP_AJ_T0101223.1 MGP_AJ_G0039189.1 mouse_genomes_project 4 69690755 69690893 - Gm25653 snoRNA snoRNA MGP_AJ_T0065485.1 MGP_AJ_G0028180.1 mouse_genomes_project 4 40371026 40372478 + MGP_AJ_P0065485 Hrct1 protein_coding protein_coding MGP_AJ_T0064922.1 MGP_AJ_G0028061.1 mouse_genomes_project 4 21711505 21745360 - Ufl1 protein_coding retained_intron MGP_AJ_T0064923.1 MGP_AJ_G0028061.1 mouse_genomes_project 4 21713387 21745352 - MGP_AJ_P0064923 Ufl1 protein_coding protein_coding MGP_AJ_T0064924.1 MGP_AJ_G0028061.1 mouse_genomes_project 4 21732735 21745348 - Ufl1 protein_coding processed_transcript MGP_AJ_T0011815.1 MGP_AJ_G0009926.1 mouse_genomes_project 4 114781462 114784243 + MGP_AJ_P0011815 Hyi polymorphic_pseudogene polymorphic_pseudogene MGP_AJ_T0011816.1 MGP_AJ_G0009926.1 mouse_genomes_project 4 114781471 114784243 + MGP_AJ_P0011816 Hyi polymorphic_pseudogene nonsense_mediated_decay MGP_AJ_T0011817.1 MGP_AJ_G0009926.1 mouse_genomes_project 4 114781471 114782792 + Hyi polymorphic_pseudogene retained_intron MGP_AJ_T0011818.1 MGP_AJ_G0009926.1 mouse_genomes_project 4 114781486 114784243 + MGP_AJ_P0011818 Hyi polymorphic_pseudogene protein_coding MGP_AJ_T0011819.1 MGP_AJ_G0009926.1 mouse_genomes_project 4 114782815 114783994 + Hyi polymorphic_pseudogene retained_intron MGP_AJ_T0067443.1 MGP_AJ_G0009926.1 mouse_genomes_project 4 114781505 114784250 + MGP_AJ_P0067443 Hyi polymorphic_pseudogene unknown_likely_coding MGP_AJ_T0067854.1 MGP_AJ_G0028736.1 mouse_genomes_project 4 122923533 122951373 + MGP_AJ_P0067854 Col8a2 protein_coding protein_coding MGP_AJ_T0067855.1 MGP_AJ_G0028736.1 mouse_genomes_project 4 122937519 122946832 + MGP_AJ_P0067855 Col8a2 protein_coding protein_coding MGP_AJ_T0008022.1 MGP_AJ_G0006544.1 mouse_genomes_project 4 138044499 138045751 + Gm13056 lincRNA lincRNA MGP_AJ_T0068422.1 MGP_AJ_G0028852.1 mouse_genomes_project 4 129943016 129996503 + MGP_AJ_P0068422 Slc9a1 protein_coding protein_coding MGP_AJ_T0068423.1 MGP_AJ_G0028852.1 mouse_genomes_project 4 129943954 129985096 + Slc9a1 protein_coding processed_transcript MGP_AJ_T0068424.1 MGP_AJ_G0028852.1 mouse_genomes_project 4 129989268 129993379 + Slc9a1 protein_coding processed_transcript MGP_AJ_T0068425.1 MGP_AJ_G0028852.1 mouse_genomes_project 4 129992310 129992995 + Slc9a1 protein_coding processed_transcript MGP_AJ_T0068426.1 MGP_AJ_G0028852.1 mouse_genomes_project 4 129992801 129995144 + Slc9a1 protein_coding processed_transcript MGP_AJ_T0068887.1 MGP_AJ_G0028959.1 mouse_genomes_project 4 135417569 135433345 - MGP_AJ_P0068887 Ubxn10 protein_coding nonsense_mediated_decay MGP_AJ_T0068888.1 MGP_AJ_G0028959.1 mouse_genomes_project 4 135426661 135433389 - MGP_AJ_P0068888 Ubxn10 protein_coding protein_coding MGP_AJ_T0068889.1 MGP_AJ_G0028959.1 mouse_genomes_project 4 135426661 135445291 - MGP_AJ_P0068889 Ubxn10 protein_coding protein_coding MGP_AJ_T0068890.1 MGP_AJ_G0028959.1 mouse_genomes_project 4 135426961 135432980 - MGP_AJ_P0068890 Ubxn10 protein_coding protein_coding MGP_AJ_T0068894.1 MGP_AJ_G0028959.1 mouse_genomes_project 4 135440000 135445260 - Ubxn10 protein_coding processed_transcript MGP_AJ_T0014413.1 MGP_AJ_G0012508.1 mouse_genomes_project 4 8689943 8690218 + processed_pseudogene processed_pseudogene MGP_AJ_T0018101.1 MGP_AJ_G0015556.1 mouse_genomes_project 4 128904511 128910161 - Snhg3 processed_transcript processed_transcript MGP_AJ_T0018102.1 MGP_AJ_G0015556.1 mouse_genomes_project 4 128908430 128910184 - Snhg3 processed_transcript processed_transcript MGP_AJ_T0018103.1 MGP_AJ_G0015556.1 mouse_genomes_project 4 128908431 128910131 - Snhg3 processed_transcript processed_transcript MGP_AJ_T0018104.1 MGP_AJ_G0015556.1 mouse_genomes_project 4 128908431 128909431 - Snhg3 processed_transcript processed_transcript MGP_AJ_T0018105.1 MGP_AJ_G0015556.1 mouse_genomes_project 4 128908501 128909834 - Snhg3 processed_transcript processed_transcript MGP_AJ_T0014730.1 MGP_AJ_G0012825.1 mouse_genomes_project 4 114141986 114142553 - processed_pseudogene processed_pseudogene MGP_AJ_T0068418.1 MGP_AJ_G0028851.1 mouse_genomes_project 4 129862987 129911155 - MGP_AJ_P0068418 Wdtc1 protein_coding protein_coding MGP_AJ_T0068419.1 MGP_AJ_G0028851.1 mouse_genomes_project 4 129879058 129924718 - Wdtc1 protein_coding processed_transcript MGP_AJ_T0068420.1 MGP_AJ_G0028851.1 mouse_genomes_project 4 129883403 129892820 - Wdtc1 protein_coding processed_transcript MGP_AJ_T0068421.1 MGP_AJ_G0028851.1 mouse_genomes_project 4 129884028 129925315 - Wdtc1 protein_coding processed_transcript MGP_AJ_T0066682.1 MGP_AJ_G0028479.1 mouse_genomes_project 4 102583555 102588111 + MGP_AJ_P0066682 Gm12728 protein_coding protein_coding MGP_AJ_T0066683.1 MGP_AJ_G0028479.1 mouse_genomes_project 4 102584220 102588111 + MGP_AJ_P0066683 Gm12728 protein_coding protein_coding MGP_AJ_T0066684.1 MGP_AJ_G0028479.1 mouse_genomes_project 4 102587901 102588393 + Gm12728 protein_coding translated_processed_pseudogene MGP_AJ_T0065657.1 MGP_AJ_G0028215.1 mouse_genomes_project 4 43049239 43062271 - MGP_AJ_P0065657 Trmo protein_coding nonsense_mediated_decay MGP_AJ_T0065658.1 MGP_AJ_G0028215.1 mouse_genomes_project 4 43049713 43062276 - MGP_AJ_P0065658 Trmo protein_coding protein_coding MGP_AJ_T0065659.1 MGP_AJ_G0028215.1 mouse_genomes_project 4 43052597 43062290 - MGP_AJ_P0065659 Trmo protein_coding protein_coding MGP_AJ_T0014706.1 MGP_AJ_G0012801.1 mouse_genomes_project 4 105534643 105535199 + processed_pseudogene processed_pseudogene MGP_AJ_T0014548.1 MGP_AJ_G0012643.1 mouse_genomes_project 4 49066839 49067097 - processed_pseudogene processed_pseudogene MGP_AJ_T0018040.1 MGP_AJ_G0015518.1 mouse_genomes_project 4 31645879 31655746 + Gm12367 processed_transcript processed_transcript MGP_AJ_T0018041.1 MGP_AJ_G0015518.1 mouse_genomes_project 4 31645897 31655844 + Gm12367 processed_transcript processed_transcript MGP_AJ_T0018042.1 MGP_AJ_G0015518.1 mouse_genomes_project 4 31645914 31682605 + Gm12367 processed_transcript processed_transcript MGP_AJ_T0064592.1 MGP_AJ_G0027982.1 mouse_genomes_project 4 386608 393761 - MGP_AJ_P0064592 Rps20 protein_coding protein_coding MGP_AJ_T0064593.1 MGP_AJ_G0027982.1 mouse_genomes_project 4 389791 393582 - MGP_AJ_P0064593 Rps20 protein_coding unknown_likely_coding MGP_AJ_T0064594.1 MGP_AJ_G0027982.1 mouse_genomes_project 4 392565 393329 - Rps20 protein_coding retained_intron MGP_AJ_T0064595.1 MGP_AJ_G0027982.1 mouse_genomes_project 4 392568 393584 - Rps20 protein_coding retained_intron MGP_AJ_T0001433.1 MGP_AJ_G0001354.1 mouse_genomes_project 4 149442790 149443212 - TEC TEC MGP_AJ_T0007936.1 MGP_AJ_G0006484.1 mouse_genomes_project 4 111016900 111023670 + Gm12829 lincRNA lincRNA MGP_AJ_T0065474.1 MGP_AJ_G0028176.1 mouse_genomes_project 4 40303885 40312894 - MGP_AJ_P0065474 Fam221b protein_coding protein_coding MGP_AJ_T0065475.1 MGP_AJ_G0028176.1 mouse_genomes_project 4 40307369 40312898 - Fam221b protein_coding retained_intron MGP_AJ_T0014388.1 MGP_AJ_G0012483.1 mouse_genomes_project 4 542337 542837 - processed_pseudogene processed_pseudogene MGP_AJ_T0004537.1 MGP_AJ_G0003940.1 mouse_genomes_project 4 122768991 122770742 + Gm12946 antisense antisense MGP_AJ_T0069357.1 MGP_AJ_G0029096.1 mouse_genomes_project 4 146246939 146395836 + MGP_AJ_P0069357 Casz1 protein_coding protein_coding MGP_AJ_T0069358.1 MGP_AJ_G0029096.1 mouse_genomes_project 4 146246939 146386055 + MGP_AJ_P0069358 Casz1 protein_coding protein_coding MGP_AJ_T0069359.1 MGP_AJ_G0029096.1 mouse_genomes_project 4 146246975 146282191 + Casz1 protein_coding processed_transcript MGP_AJ_T0069360.1 MGP_AJ_G0029096.1 mouse_genomes_project 4 146330400 146332958 + Casz1 protein_coding processed_transcript MGP_AJ_T0069361.1 MGP_AJ_G0029096.1 mouse_genomes_project 4 146342171 146373822 + MGP_AJ_P0069361 Casz1 protein_coding protein_coding MGP_AJ_T0069362.1 MGP_AJ_G0029096.1 mouse_genomes_project 4 146374039 146381438 + MGP_AJ_P0069362 Casz1 protein_coding protein_coding MGP_AJ_T0066007.1 MGP_AJ_G0028316.1 mouse_genomes_project 4 59254793 59258062 - MGP_AJ_P0066007 Hdhd3 protein_coding protein_coding MGP_AJ_T0066008.1 MGP_AJ_G0028316.1 mouse_genomes_project 4 59255728 59259253 - Hdhd3 protein_coding processed_transcript MGP_AJ_T0069673.1 MGP_AJ_G0029152.1 mouse_genomes_project 4 151579426 151611469 + MGP_AJ_P0069673 Cep104 protein_coding protein_coding MGP_AJ_T0069674.1 MGP_AJ_G0029152.1 mouse_genomes_project 4 151592551 151611469 + MGP_AJ_P0069674 Cep104 protein_coding nonsense_mediated_decay MGP_AJ_T0069675.1 MGP_AJ_G0029152.1 mouse_genomes_project 4 151593291 151594162 + Cep104 protein_coding retained_intron MGP_AJ_T0068142.1 MGP_AJ_G0028797.1 mouse_genomes_project 4 126384387 126423429 - MGP_AJ_P0068142 Khdrbs1 protein_coding nonsense_mediated_decay MGP_AJ_T0068143.1 MGP_AJ_G0028797.1 mouse_genomes_project 4 126385046 126395055 - Khdrbs1 protein_coding retained_intron MGP_AJ_T0068144.1 MGP_AJ_G0028797.1 mouse_genomes_project 4 126395053 126423428 - MGP_AJ_P0068144 Khdrbs1 protein_coding protein_coding MGP_AJ_T0068145.1 MGP_AJ_G0028797.1 mouse_genomes_project 4 126410308 126423435 - Khdrbs1 protein_coding retained_intron MGP_AJ_T0014750.1 MGP_AJ_G0012845.1 mouse_genomes_project 4 117851588 117851917 + processed_pseudogene processed_pseudogene MGP_AJ_T0067628.1 MGP_AJ_G0028675.1 mouse_genomes_project 4 117331253 117360488 + Rims3 protein_coding processed_transcript MGP_AJ_T0067629.1 MGP_AJ_G0028675.1 mouse_genomes_project 4 117331256 117372595 + MGP_AJ_P0067629 Rims3 protein_coding protein_coding MGP_AJ_T0067630.1 MGP_AJ_G0028675.1 mouse_genomes_project 4 117338213 117372595 + MGP_AJ_P0067630 Rims3 protein_coding protein_coding MGP_AJ_T0067631.1 MGP_AJ_G0028675.1 mouse_genomes_project 4 117353906 117367576 + MGP_AJ_P0067631 Rims3 protein_coding protein_coding MGP_AJ_T0066689.1 MGP_AJ_G0028481.1 mouse_genomes_project 4 103246058 103268394 - MGP_AJ_P0066689 Pcsk9 protein_coding protein_coding MGP_AJ_T0014510.1 MGP_AJ_G0012605.1 mouse_genomes_project 4 35134271 35135207 + processed_pseudogene processed_pseudogene MGP_AJ_T0010573.1 MGP_AJ_G0008695.1 mouse_genomes_project 4 12694043 12694153 - Gm22690 miRNA miRNA MGP_AJ_T0014563.1 MGP_AJ_G0012658.1 mouse_genomes_project 4 51908758 51909001 - processed_pseudogene processed_pseudogene MGP_AJ_T0101249.1 MGP_AJ_G0039215.1 mouse_genomes_project 4 117973794 117973926 + Gm26162 snoRNA snoRNA MGP_AJ_T0008035.1 MGP_AJ_G0006557.1 mouse_genomes_project 4 150267014 150269990 + Gm833 lincRNA lincRNA MGP_AJ_T0064864.1 MGP_AJ_G0028050.1 mouse_genomes_project 4 18224220 18239476 + Usp45 protein_coding processed_transcript MGP_AJ_T0064865.1 MGP_AJ_G0028050.1 mouse_genomes_project 4 18233271 18241824 + Usp45 protein_coding retained_intron MGP_AJ_T0064866.1 MGP_AJ_G0028050.1 mouse_genomes_project 4 18233282 18300553 + MGP_AJ_P0064866 Usp45 protein_coding protein_coding MGP_AJ_T0064867.1 MGP_AJ_G0028050.1 mouse_genomes_project 4 18233282 18300555 + MGP_AJ_P0064867 Usp45 protein_coding protein_coding MGP_AJ_T0064868.1 MGP_AJ_G0028050.1 mouse_genomes_project 4 18233291 18255651 + MGP_AJ_P0064868 Usp45 protein_coding protein_coding MGP_AJ_T0064869.1 MGP_AJ_G0028050.1 mouse_genomes_project 4 18233308 18300555 + MGP_AJ_P0064869 Usp45 protein_coding nonsense_mediated_decay MGP_AJ_T0064870.1 MGP_AJ_G0028050.1 mouse_genomes_project 4 18238736 18300553 + MGP_AJ_P0064870 Usp45 protein_coding nonsense_mediated_decay MGP_AJ_T0064871.1 MGP_AJ_G0028050.1 mouse_genomes_project 4 18241707 18273888 + MGP_AJ_P0064871 Usp45 protein_coding nonsense_mediated_decay MGP_AJ_T0066167.1 MGP_AJ_G0028357.1 mouse_genomes_project 4 77679030 77721270 + MGP_AJ_P0066167 Lurap1l protein_coding protein_coding MGP_AJ_T0066999.1 MGP_AJ_G0028535.1 mouse_genomes_project 4 106312249 106337801 - MGP_AJ_P0066999 4930522H14Rik protein_coding protein_coding MGP_AJ_T0067000.1 MGP_AJ_G0028535.1 mouse_genomes_project 4 106312277 106337708 - MGP_AJ_P0067000 4930522H14Rik protein_coding protein_coding MGP_AJ_T0067001.1 MGP_AJ_G0028536.1 mouse_genomes_project 4 106457867 106462344 - MGP_AJ_P0067001 Cdkn2c protein_coding protein_coding MGP_AJ_T0067002.1 MGP_AJ_G0028536.1 mouse_genomes_project 4 106457867 106464161 - MGP_AJ_P0067002 Cdkn2c protein_coding protein_coding MGP_AJ_T0065972.1 MGP_AJ_G0028306.1 mouse_genomes_project 4 58884535 58887278 - MGP_AJ_P0065972 Mup21 protein_coding protein_coding MGP_AJ_T0014727.1 MGP_AJ_G0012822.1 mouse_genomes_project 4 113346489 113347292 - processed_pseudogene processed_pseudogene MGP_AJ_T0067458.1 MGP_AJ_G0028628.1 mouse_genomes_project 4 114849954 114854529 + MGP_AJ_P0067458 Elovl1 protein_coding protein_coding MGP_AJ_T0067459.1 MGP_AJ_G0028628.1 mouse_genomes_project 4 114850039 114850740 + Elovl1 protein_coding processed_transcript MGP_AJ_T0067460.1 MGP_AJ_G0028628.1 mouse_genomes_project 4 114850083 114853856 + Elovl1 protein_coding processed_transcript MGP_AJ_T0067461.1 MGP_AJ_G0028628.1 mouse_genomes_project 4 114850117 114852984 + Elovl1 protein_coding processed_transcript MGP_AJ_T0066551.1 MGP_AJ_G0028449.1 mouse_genomes_project 4 96836387 97198607 + MGP_AJ_P0066551 Ror1 protein_coding protein_coding MGP_AJ_T0067109.1 MGP_AJ_G0028561.1 mouse_genomes_project 4 111854389 111864324 - MGP_AJ_P0067109 Cyp4a14 protein_coding protein_coding MGP_AJ_T0067110.1 MGP_AJ_G0028561.1 mouse_genomes_project 4 111862253 111864322 - Cyp4a14 protein_coding processed_transcript MGP_AJ_T0064711.1 MGP_AJ_G0028005.1 mouse_genomes_project 4 7673671 7691669 + MGP_AJ_P0064711 Trp53inp1 protein_coding protein_coding MGP_AJ_T0064712.1 MGP_AJ_G0028005.1 mouse_genomes_project 4 7673681 7691669 + Trp53inp1 protein_coding processed_transcript MGP_AJ_T0064713.1 MGP_AJ_G0028005.1 mouse_genomes_project 4 7673684 7683662 + Trp53inp1 protein_coding processed_transcript MGP_AJ_T0064714.1 MGP_AJ_G0028005.1 mouse_genomes_project 4 7681711 7685276 + Trp53inp1 protein_coding processed_transcript MGP_AJ_T0067260.1 MGP_AJ_G0028593.1 mouse_genomes_project 4 113103081 113108969 - MGP_AJ_P0067260 Mmachc protein_coding protein_coding MGP_AJ_T0067261.1 MGP_AJ_G0028593.1 mouse_genomes_project 4 113105191 113108851 - Mmachc protein_coding processed_transcript MGP_AJ_T0004454.1 MGP_AJ_G0003878.1 mouse_genomes_project 4 42973098 43015908 - Gm12446 antisense antisense MGP_AJ_T0004455.1 MGP_AJ_G0003878.1 mouse_genomes_project 4 43000965 43018399 - Gm12446 antisense antisense MGP_AJ_T0015142.1 MGP_AJ_G0013237.1 mouse_genomes_project 5 118887868 118888079 + processed_pseudogene processed_pseudogene MGP_AJ_T0004672.1 MGP_AJ_G0004044.1 mouse_genomes_project 5 32910556 32912487 + Gm15650 antisense antisense MGP_AJ_T0008093.1 MGP_AJ_G0006600.1 mouse_genomes_project 5 29471776 29479676 - Gm7596 lincRNA lincRNA MGP_AJ_T0008094.1 MGP_AJ_G0006600.1 mouse_genomes_project 5 29471802 29475072 - Gm7596 lincRNA lincRNA MGP_AJ_T0070647.1 MGP_AJ_G0029335.1 mouse_genomes_project 5 25184920 25191362 + MGP_AJ_P0070647 En2 protein_coding protein_coding MGP_AJ_T0008150.1 MGP_AJ_G0006642.1 mouse_genomes_project 5 57133006 57154282 - 4933402J10Rik lincRNA lincRNA MGP_AJ_T0008151.1 MGP_AJ_G0006642.1 mouse_genomes_project 5 57133011 57154276 - 4933402J10Rik lincRNA lincRNA MGP_AJ_T0098456.1 MGP_AJ_G0036440.1 mouse_genomes_project 5 120272193 120272609 - pseudogene pseudogene MGP_AJ_T0071219.1 MGP_AJ_G0029428.1 mouse_genomes_project 5 31350639 31444107 - MGP_AJ_P0071219 Zfyve28 protein_coding protein_coding MGP_AJ_T0071220.1 MGP_AJ_G0029428.1 mouse_genomes_project 5 31374520 31391538 - Zfyve28 protein_coding retained_intron MGP_AJ_T0071221.1 MGP_AJ_G0029428.1 mouse_genomes_project 5 31374605 31392000 - Zfyve28 protein_coding processed_transcript MGP_AJ_T0071222.1 MGP_AJ_G0029428.1 mouse_genomes_project 5 31380955 31402543 - Zfyve28 protein_coding retained_intron MGP_AJ_T0071223.1 MGP_AJ_G0029428.1 mouse_genomes_project 5 31385570 31444230 - Zfyve28 protein_coding processed_transcript MGP_AJ_T0071224.1 MGP_AJ_G0029428.1 mouse_genomes_project 5 31393393 31444218 - MGP_AJ_P0071224 Zfyve28 protein_coding protein_coding MGP_AJ_T0014919.1 MGP_AJ_G0013014.1 mouse_genomes_project 5 24835743 24836224 + processed_pseudogene processed_pseudogene MGP_AJ_T0008334.1 MGP_AJ_G0006771.1 mouse_genomes_project 5 114575026 114577149 - 4930562A09Rik lincRNA lincRNA MGP_AJ_T0070822.1 MGP_AJ_G0029368.1 mouse_genomes_project 5 27955219 27968081 - MGP_AJ_P0070822 Cgref1 protein_coding protein_coding MGP_AJ_T0070823.1 MGP_AJ_G0029368.1 mouse_genomes_project 5 27957294 27967896 - Cgref1 protein_coding retained_intron MGP_AJ_T0073575.1 MGP_AJ_G0029897.1 mouse_genomes_project 5 112260657 112269595 + MGP_AJ_P0073575 Ung protein_coding protein_coding MGP_AJ_T0073576.1 MGP_AJ_G0029897.1 mouse_genomes_project 5 112261500 112269599 + MGP_AJ_P0073576 Ung protein_coding protein_coding MGP_AJ_T0073577.1 MGP_AJ_G0029897.1 mouse_genomes_project 5 112261500 112268652 + MGP_AJ_P0073577 Ung protein_coding nonsense_mediated_decay MGP_AJ_T0073578.1 MGP_AJ_G0029897.1 mouse_genomes_project 5 112262279 112268577 + MGP_AJ_P0073578 Ung protein_coding protein_coding MGP_AJ_T0073579.1 MGP_AJ_G0029897.1 mouse_genomes_project 5 112262351 112265450 + Ung protein_coding retained_intron MGP_AJ_T0001442.1 MGP_AJ_G0001363.1 mouse_genomes_project 5 5502841 5506456 + TEC TEC MGP_AJ_T0008234.1 MGP_AJ_G0006709.1 mouse_genomes_project 5 97619018 97628215 + lincRNA lincRNA MGP_AJ_T0099040.1 MGP_AJ_G0037017.1 mouse_genomes_project 5 27835341 27838143 + Gm19409 sense_intronic sense_intronic MGP_AJ_T0073032.1 MGP_AJ_G0029782.1 mouse_genomes_project 5 102535481 102584994 - MGP_AJ_P0073032 Abcg3 protein_coding protein_coding MGP_AJ_T0073033.1 MGP_AJ_G0029782.1 mouse_genomes_project 5 102536114 102580103 - MGP_AJ_P0073033 Abcg3 protein_coding protein_coding MGP_AJ_T0074746.1 MGP_AJ_G0030106.1 mouse_genomes_project 5 128464147 128477296 - MGP_AJ_P0074746 Asl protein_coding protein_coding MGP_AJ_T0074747.1 MGP_AJ_G0030106.1 mouse_genomes_project 5 128464381 128467653 - MGP_AJ_P0074747 Asl protein_coding protein_coding MGP_AJ_T0074748.1 MGP_AJ_G0030106.1 mouse_genomes_project 5 128464382 128482108 - MGP_AJ_P0074748 Asl protein_coding protein_coding MGP_AJ_T0074749.1 MGP_AJ_G0030106.1 mouse_genomes_project 5 128464391 128477933 - MGP_AJ_P0074749 Asl protein_coding protein_coding MGP_AJ_T0074750.1 MGP_AJ_G0030106.1 mouse_genomes_project 5 128466377 128477215 - MGP_AJ_P0074750 Asl protein_coding protein_coding MGP_AJ_T0074751.1 MGP_AJ_G0030106.1 mouse_genomes_project 5 128469680 128477288 - Asl protein_coding processed_transcript MGP_AJ_T0074752.1 MGP_AJ_G0030106.1 mouse_genomes_project 5 128472643 128477232 - MGP_AJ_P0074752 Asl protein_coding protein_coding MGP_AJ_T0074753.1 MGP_AJ_G0030106.1 mouse_genomes_project 5 128475212 128477260 - Asl protein_coding retained_intron MGP_AJ_T0010737.1 MGP_AJ_G0008859.1 mouse_genomes_project 5 143818073 143818158 - Mir7039 miRNA miRNA MGP_AJ_T0001606.1 MGP_AJ_G0001523.1 mouse_genomes_project 5 54909051 54911640 + TEC TEC MGP_AJ_T0074354.1 MGP_AJ_G0030037.1 mouse_genomes_project 5 121952490 121972083 + MGP_AJ_P0074354 Lrrc43 protein_coding protein_coding MGP_AJ_T0074355.1 MGP_AJ_G0030037.1 mouse_genomes_project 5 121952510 121972096 + MGP_AJ_P0074355 Lrrc43 protein_coding protein_coding MGP_AJ_T0074356.1 MGP_AJ_G0030037.1 mouse_genomes_project 5 121952512 121972089 + MGP_AJ_P0074356 Lrrc43 protein_coding protein_coding MGP_AJ_T0008492.1 MGP_AJ_G0006881.1 mouse_genomes_project 5 150112415 150132090 - Gm43298 lincRNA lincRNA MGP_AJ_T0004808.1 MGP_AJ_G0004142.1 mouse_genomes_project 5 118646680 118675760 - antisense antisense MGP_AJ_T0015166.1 MGP_AJ_G0013261.1 mouse_genomes_project 5 135993805 135994082 + processed_pseudogene processed_pseudogene MGP_AJ_T0008427.1 MGP_AJ_G0006831.1 mouse_genomes_project 5 136063736 136064692 + 9130604C24Rik lincRNA lincRNA MGP_AJ_T0015171.1 MGP_AJ_G0013266.1 mouse_genomes_project 5 136476908 136477143 - processed_pseudogene processed_pseudogene MGP_AJ_T0072391.1 MGP_AJ_G0029628.1 mouse_genomes_project 5 78301616 78663461 + Adgrl3 protein_coding retained_intron MGP_AJ_T0072392.1 MGP_AJ_G0029628.1 mouse_genomes_project 5 78302049 79057423 + MGP_AJ_P0072392 Adgrl3 protein_coding nonsense_mediated_decay MGP_AJ_T0072393.1 MGP_AJ_G0029628.1 mouse_genomes_project 5 78302230 78953743 + Adgrl3 protein_coding retained_intron MGP_AJ_T0072394.1 MGP_AJ_G0029628.1 mouse_genomes_project 5 78302233 78953740 + Adgrl3 protein_coding retained_intron MGP_AJ_T0072395.1 MGP_AJ_G0029628.1 mouse_genomes_project 5 78302474 78349710 + Adgrl3 protein_coding retained_intron MGP_AJ_T0072396.1 MGP_AJ_G0029628.1 mouse_genomes_project 5 78302677 78739245 + Adgrl3 protein_coding retained_intron MGP_AJ_T0072397.1 MGP_AJ_G0029628.1 mouse_genomes_project 5 78302680 79053769 + MGP_AJ_P0072397 Adgrl3 protein_coding protein_coding MGP_AJ_T0072398.1 MGP_AJ_G0029628.1 mouse_genomes_project 5 78302718 79057434 + MGP_AJ_P0072398 Adgrl3 protein_coding protein_coding MGP_AJ_T0072399.1 MGP_AJ_G0029628.1 mouse_genomes_project 5 78303071 79057424 + MGP_AJ_P0072399 Adgrl3 protein_coding protein_coding MGP_AJ_T0072400.1 MGP_AJ_G0029628.1 mouse_genomes_project 5 78303269 78480257 + Adgrl3 protein_coding processed_transcript MGP_AJ_T0072401.1 MGP_AJ_G0029628.1 mouse_genomes_project 5 78303270 79057423 + Adgrl3 protein_coding processed_transcript MGP_AJ_T0072402.1 MGP_AJ_G0029628.1 mouse_genomes_project 5 78303288 78833396 + Adgrl3 protein_coding retained_intron MGP_AJ_T0072403.1 MGP_AJ_G0029628.1 mouse_genomes_project 5 78591228 79056136 + MGP_AJ_P0072403 Adgrl3 protein_coding protein_coding MGP_AJ_T0072404.1 MGP_AJ_G0029628.1 mouse_genomes_project 5 78591229 79056136 + MGP_AJ_P0072404 Adgrl3 protein_coding protein_coding MGP_AJ_T0072405.1 MGP_AJ_G0029628.1 mouse_genomes_project 5 78591229 79056136 + MGP_AJ_P0072405 Adgrl3 protein_coding protein_coding MGP_AJ_T0072406.1 MGP_AJ_G0029628.1 mouse_genomes_project 5 78591229 79056136 + MGP_AJ_P0072406 Adgrl3 protein_coding protein_coding MGP_AJ_T0072407.1 MGP_AJ_G0029628.1 mouse_genomes_project 5 78591229 79056136 + MGP_AJ_P0072407 Adgrl3 protein_coding protein_coding MGP_AJ_T0072408.1 MGP_AJ_G0029628.1 mouse_genomes_project 5 78591229 79056136 + MGP_AJ_P0072408 Adgrl3 protein_coding protein_coding MGP_AJ_T0072409.1 MGP_AJ_G0029628.1 mouse_genomes_project 5 78591229 79056136 + MGP_AJ_P0072409 Adgrl3 protein_coding protein_coding MGP_AJ_T0072410.1 MGP_AJ_G0029628.1 mouse_genomes_project 5 78591229 79056136 + MGP_AJ_P0072410 Adgrl3 protein_coding protein_coding MGP_AJ_T0072411.1 MGP_AJ_G0029628.1 mouse_genomes_project 5 78591229 79056136 + MGP_AJ_P0072411 Adgrl3 protein_coding protein_coding MGP_AJ_T0072412.1 MGP_AJ_G0029628.1 mouse_genomes_project 5 78591237 78627686 + Adgrl3 protein_coding processed_transcript MGP_AJ_T0072413.1 MGP_AJ_G0029628.1 mouse_genomes_project 5 78591267 79056005 + MGP_AJ_P0072413 Adgrl3 protein_coding protein_coding MGP_AJ_T0072414.1 MGP_AJ_G0029628.1 mouse_genomes_project 5 78591267 79056005 + MGP_AJ_P0072414 Adgrl3 protein_coding protein_coding MGP_AJ_T0072415.1 MGP_AJ_G0029628.1 mouse_genomes_project 5 78591267 79056676 + MGP_AJ_P0072415 Adgrl3 protein_coding protein_coding MGP_AJ_T0072416.1 MGP_AJ_G0029628.1 mouse_genomes_project 5 78591267 79056005 + MGP_AJ_P0072416 Adgrl3 protein_coding protein_coding MGP_AJ_T0072417.1 MGP_AJ_G0029628.1 mouse_genomes_project 5 78591292 79056505 + MGP_AJ_P0072417 Adgrl3 protein_coding protein_coding MGP_AJ_T0072418.1 MGP_AJ_G0029628.1 mouse_genomes_project 5 78591380 79057423 + MGP_AJ_P0072418 Adgrl3 protein_coding protein_coding MGP_AJ_T0072419.1 MGP_AJ_G0029628.1 mouse_genomes_project 5 78591380 79057423 + MGP_AJ_P0072419 Adgrl3 protein_coding protein_coding MGP_AJ_T0072420.1 MGP_AJ_G0029628.1 mouse_genomes_project 5 78910997 78953522 + Adgrl3 protein_coding processed_transcript MGP_AJ_T0072421.1 MGP_AJ_G0029628.1 mouse_genomes_project 5 78924948 78926304 + Adgrl3 protein_coding retained_intron MGP_AJ_T0072422.1 MGP_AJ_G0029628.1 mouse_genomes_project 5 78925307 79057423 + MGP_AJ_P0072422 Adgrl3 protein_coding protein_coding MGP_AJ_T0072423.1 MGP_AJ_G0029628.1 mouse_genomes_project 5 78983521 78985603 + Adgrl3 protein_coding retained_intron MGP_AJ_T0072424.1 MGP_AJ_G0029628.1 mouse_genomes_project 5 79032454 79084566 + Adgrl3 protein_coding processed_transcript MGP_AJ_T0072425.1 MGP_AJ_G0029628.1 mouse_genomes_project 5 79052351 79054386 + Adgrl3 protein_coding retained_intron MGP_AJ_T0100030.1 MGP_AJ_G0037996.1 mouse_genomes_project 5 84184420 84184527 - Gm25211 snRNA snRNA MGP_AJ_T0010735.1 MGP_AJ_G0008857.1 mouse_genomes_project 5 139970454 139970533 + Gm26113 miRNA miRNA MGP_AJ_T0008123.1 MGP_AJ_G0006617.1 mouse_genomes_project 5 37162702 37175208 - Gm35191 lincRNA lincRNA MGP_AJ_T0004877.1 MGP_AJ_G0004193.1 mouse_genomes_project 5 142274495 142277953 + 0610040B10Rik antisense antisense MGP_AJ_T0004878.1 MGP_AJ_G0004193.1 mouse_genomes_project 5 142274556 142276199 + 0610040B10Rik antisense antisense MGP_AJ_T0004879.1 MGP_AJ_G0004193.1 mouse_genomes_project 5 142274575 142277950 + 0610040B10Rik antisense antisense MGP_AJ_T0008391.1 MGP_AJ_G0006808.1 mouse_genomes_project 5 125257368 125275620 - Gm42953 lincRNA lincRNA MGP_AJ_T0008223.1 MGP_AJ_G0006702.1 mouse_genomes_project 5 95045923 95295036 + 4930467D21Rik lincRNA lincRNA MGP_AJ_T0008224.1 MGP_AJ_G0006702.1 mouse_genomes_project 5 95045953 95242118 + 4930467D21Rik lincRNA lincRNA MGP_AJ_T0073701.1 MGP_AJ_G0029921.1 mouse_genomes_project 5 113255411 113256018 - MGP_AJ_P0073701 Gm10401 protein_coding protein_coding MGP_AJ_T0001842.1 MGP_AJ_G0001756.1 mouse_genomes_project 5 128683056 128684507 + TEC TEC MGP_AJ_T0001481.1 MGP_AJ_G0001401.1 mouse_genomes_project 5 24206676 24209907 + TEC TEC MGP_AJ_T0008116.1 MGP_AJ_G0006612.1 mouse_genomes_project 5 35528256 35534064 + 4930487D11Rik lincRNA lincRNA MGP_AJ_T0075314.1 MGP_AJ_G0030204.1 mouse_genomes_project 5 136194315 136206756 + MGP_AJ_P0075314 Gm20605 protein_coding protein_coding MGP_AJ_T0075315.1 MGP_AJ_G0030204.1 mouse_genomes_project 5 136194337 136202461 + Gm20605 protein_coding retained_intron MGP_AJ_T0075316.1 MGP_AJ_G0030204.1 mouse_genomes_project 5 136194346 136203276 + MGP_AJ_P0075316 Gm20605 protein_coding nonsense_mediated_decay MGP_AJ_T0075318.1 MGP_AJ_G0030204.1 mouse_genomes_project 5 136194372 136206761 + MGP_AJ_P0075318 Gm20605 protein_coding protein_coding MGP_AJ_T0075319.1 MGP_AJ_G0030204.1 mouse_genomes_project 5 136194372 136199082 + MGP_AJ_P0075319 Gm20605 protein_coding nonsense_mediated_decay MGP_AJ_T0075320.1 MGP_AJ_G0030204.1 mouse_genomes_project 5 136195324 136205842 + MGP_AJ_P0075320 Gm20605 protein_coding protein_coding MGP_AJ_T0075321.1 MGP_AJ_G0030204.1 mouse_genomes_project 5 136203981 136205025 + MGP_AJ_P0075321 Gm20605 protein_coding protein_coding MGP_AJ_T0075322.1 MGP_AJ_G0030204.1 mouse_genomes_project 5 136205027 136205901 + MGP_AJ_P0075322 Gm20605 protein_coding protein_coding MGP_AJ_T0071394.1 MGP_AJ_G0029452.1 mouse_genomes_project 5 33081875 33194075 + MGP_AJ_P0071394 Afap1 protein_coding protein_coding MGP_AJ_T0071395.1 MGP_AJ_G0029452.1 mouse_genomes_project 5 33082021 33093644 + Afap1 protein_coding processed_transcript MGP_AJ_T0071396.1 MGP_AJ_G0029452.1 mouse_genomes_project 5 33101057 33186191 + MGP_AJ_P0071396 Afap1 protein_coding protein_coding MGP_AJ_T0071397.1 MGP_AJ_G0029452.1 mouse_genomes_project 5 33121240 33194032 + MGP_AJ_P0071397 Afap1 protein_coding unknown_likely_coding MGP_AJ_T0071398.1 MGP_AJ_G0029452.1 mouse_genomes_project 5 33176778 33180998 + Afap1 protein_coding retained_intron MGP_AJ_T0075438.1 MGP_AJ_G0030234.1 mouse_genomes_project 5 136994041 137009040 - MGP_AJ_P0075438 Gm43720 protein_coding nonsense_mediated_decay MGP_AJ_T0070284.1 MGP_AJ_G0029259.1 mouse_genomes_project 5 10613964 10642399 + MGP_AJ_P0070284 protein_coding protein_coding MGP_AJ_T0072761.1 MGP_AJ_G0029721.1 mouse_genomes_project 5 90069620 90073723 - Ccdc158 protein_coding retained_intron MGP_AJ_T0072762.1 MGP_AJ_G0029721.1 mouse_genomes_project 5 90069919 90131268 - MGP_AJ_P0072762 Ccdc158 protein_coding protein_coding MGP_AJ_T0072763.1 MGP_AJ_G0029721.1 mouse_genomes_project 5 90108206 90131408 - MGP_AJ_P0072763 Ccdc158 protein_coding protein_coding MGP_AJ_T0072764.1 MGP_AJ_G0029721.1 mouse_genomes_project 5 90108206 90131414 - MGP_AJ_P0072764 Ccdc158 protein_coding protein_coding MGP_AJ_T0001477.1 MGP_AJ_G0001398.1 mouse_genomes_project 5 21422419 21424521 - TEC TEC MGP_AJ_T0001478.1 MGP_AJ_G0001398.1 mouse_genomes_project 5 21423985 21424519 - TEC TEC MGP_AJ_T0075656.1 MGP_AJ_G0030279.1 mouse_genomes_project 5 141313618 141333139 + MGP_AJ_P0075656 Foxk1 protein_coding protein_coding MGP_AJ_T0075657.1 MGP_AJ_G0030279.1 mouse_genomes_project 5 141313621 141376562 + MGP_AJ_P0075657 Foxk1 protein_coding protein_coding MGP_AJ_T0075900.1 MGP_AJ_G0030328.1 mouse_genomes_project 5 144104108 144124655 - MGP_AJ_P0075900 Ptcd1 protein_coding protein_coding MGP_AJ_T0075901.1 MGP_AJ_G0030328.1 mouse_genomes_project 5 144122998 144124503 - MGP_AJ_P0075901 Ptcd1 protein_coding protein_coding MGP_AJ_T0015160.1 MGP_AJ_G0013255.1 mouse_genomes_project 5 134188217 134188575 - processed_pseudogene processed_pseudogene MGP_AJ_T0098688.1 MGP_AJ_G0036672.1 mouse_genomes_project 5 34278599 34278702 - Gm25551 rRNA rRNA MGP_AJ_T0074789.1 MGP_AJ_G0030114.1 mouse_genomes_project 5 128829120 129310320 + MGP_AJ_P0074789 Caln1 protein_coding protein_coding MGP_AJ_T0074792.1 MGP_AJ_G0030114.1 mouse_genomes_project 5 128845422 128969147 + MGP_AJ_P0074792 Caln1 protein_coding protein_coding MGP_AJ_T0074793.1 MGP_AJ_G0030114.1 mouse_genomes_project 5 128911986 129081847 + MGP_AJ_P0074793 Caln1 protein_coding protein_coding MGP_AJ_T0074794.1 MGP_AJ_G0030114.1 mouse_genomes_project 5 128912549 129310782 + MGP_AJ_P0074794 Caln1 protein_coding protein_coding MGP_AJ_T0074795.1 MGP_AJ_G0030114.1 mouse_genomes_project 5 128913338 129318135 + MGP_AJ_P0074795 Caln1 protein_coding protein_coding MGP_AJ_T0072049.1 MGP_AJ_G0029563.1 mouse_genomes_project 5 64644106 64680675 - MGP_AJ_P0072049 Bend4 protein_coding protein_coding MGP_AJ_T0072050.1 MGP_AJ_G0029563.1 mouse_genomes_project 5 64644107 64680493 - MGP_AJ_P0072050 Bend4 protein_coding nonsense_mediated_decay MGP_AJ_T0072051.1 MGP_AJ_G0029563.1 mouse_genomes_project 5 64644107 64680493 - MGP_AJ_P0072051 Bend4 protein_coding nonsense_mediated_decay MGP_AJ_T0072052.1 MGP_AJ_G0029563.1 mouse_genomes_project 5 64644107 64680206 - MGP_AJ_P0072052 Bend4 protein_coding protein_coding MGP_AJ_T0072053.1 MGP_AJ_G0029563.1 mouse_genomes_project 5 64644107 64681186 - MGP_AJ_P0072053 Bend4 protein_coding protein_coding MGP_AJ_T0008166.1 MGP_AJ_G0006654.1 mouse_genomes_project 5 64618772 64624141 + Gm43698 lincRNA lincRNA MGP_AJ_T0008167.1 MGP_AJ_G0006654.1 mouse_genomes_project 5 64623868 64624962 + Gm43698 lincRNA lincRNA MGP_AJ_T0073117.1 MGP_AJ_G0029801.1 mouse_genomes_project 5 105267708 105271199 + MGP_AJ_P0073117 Lpcat2b protein_coding protein_coding MGP_AJ_T0101814.1 MGP_AJ_G0039720.1 mouse_genomes_project 5 30286601 30287763 - transcribed_processed_pseudogene processed_transcript MGP_AJ_T0101815.1 MGP_AJ_G0039720.1 mouse_genomes_project 5 30287288 30288075 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0001754.1 MGP_AJ_G0001669.1 mouse_genomes_project 5 109125118 109125852 + TEC TEC MGP_AJ_T0008103.1 MGP_AJ_G0006607.1 mouse_genomes_project 5 33639745 33657993 - 2210406O10Rik lincRNA lincRNA MGP_AJ_T0008104.1 MGP_AJ_G0006607.1 mouse_genomes_project 5 33647752 33657984 - 2210406O10Rik lincRNA lincRNA MGP_AJ_T0008105.1 MGP_AJ_G0006607.1 mouse_genomes_project 5 33648555 33657983 - 2210406O10Rik lincRNA lincRNA MGP_AJ_T0008106.1 MGP_AJ_G0006607.1 mouse_genomes_project 5 33651054 33658025 - 2210406O10Rik lincRNA lincRNA MGP_AJ_T0072568.1 MGP_AJ_G0029676.1 mouse_genomes_project 5 86021339 86106377 + MGP_AJ_P0072568 Rufy3 protein_coding protein_coding MGP_AJ_T0072569.1 MGP_AJ_G0029676.1 mouse_genomes_project 5 86021339 86115078 + MGP_AJ_P0072569 Rufy3 protein_coding protein_coding MGP_AJ_T0072570.1 MGP_AJ_G0029676.1 mouse_genomes_project 5 86045348 86104609 + MGP_AJ_P0072570 Rufy3 protein_coding protein_coding MGP_AJ_T0072571.1 MGP_AJ_G0029676.1 mouse_genomes_project 5 86045371 86106378 + MGP_AJ_P0072571 Rufy3 protein_coding protein_coding MGP_AJ_T0072572.1 MGP_AJ_G0029676.1 mouse_genomes_project 5 86045412 86047748 + Rufy3 protein_coding retained_intron MGP_AJ_T0072573.1 MGP_AJ_G0029676.1 mouse_genomes_project 5 86045413 86081470 + Rufy3 protein_coding retained_intron MGP_AJ_T0072574.1 MGP_AJ_G0029676.1 mouse_genomes_project 5 86045629 86104610 + MGP_AJ_P0072574 Rufy3 protein_coding protein_coding MGP_AJ_T0072575.1 MGP_AJ_G0029676.1 mouse_genomes_project 5 86110372 86112000 + Rufy3 protein_coding retained_intron MGP_AJ_T0073839.1 MGP_AJ_G0029945.1 mouse_genomes_project 5 114592952 114607214 - MGP_AJ_P0073839 Hspb8 protein_coding protein_coding MGP_AJ_T0073840.1 MGP_AJ_G0029945.1 mouse_genomes_project 5 114593401 114600287 - Hspb8 protein_coding processed_transcript MGP_AJ_T0010699.1 MGP_AJ_G0008821.1 mouse_genomes_project 5 108755840 108755907 - Mir7026 miRNA miRNA MGP_AJ_T0014997.1 MGP_AJ_G0013092.1 mouse_genomes_project 5 57904963 57906756 + processed_pseudogene processed_pseudogene MGP_AJ_T0001890.1 MGP_AJ_G0001803.1 mouse_genomes_project 5 139197593 139199803 - TEC TEC MGP_AJ_T0010739.1 MGP_AJ_G0008861.1 mouse_genomes_project 5 148459334 148459412 - miRNA miRNA MGP_AJ_T0074545.1 MGP_AJ_G0030066.1 mouse_genomes_project 5 123043550 123052543 - MGP_AJ_P0074545 Eif2b1 protein_coding protein_coding MGP_AJ_T0074546.1 MGP_AJ_G0030066.1 mouse_genomes_project 5 123045091 123048257 - Eif2b1 protein_coding retained_intron MGP_AJ_T0074547.1 MGP_AJ_G0030066.1 mouse_genomes_project 5 123046421 123052473 - MGP_AJ_P0074547 Eif2b1 protein_coding nonsense_mediated_decay MGP_AJ_T0074548.1 MGP_AJ_G0030066.1 mouse_genomes_project 5 123047071 123052487 - MGP_AJ_P0074548 Eif2b1 protein_coding protein_coding MGP_AJ_T0074549.1 MGP_AJ_G0030066.1 mouse_genomes_project 5 123050236 123052404 - MGP_AJ_P0074549 Eif2b1 protein_coding protein_coding MGP_AJ_T0074550.1 MGP_AJ_G0030066.1 mouse_genomes_project 5 123051930 123052444 - MGP_AJ_P0074550 Eif2b1 protein_coding nonsense_mediated_decay MGP_AJ_T0072373.1 MGP_AJ_G0029622.1 mouse_genomes_project 5 74349282 74358042 - MGP_AJ_P0072373 Hopx protein_coding protein_coding MGP_AJ_T0072374.1 MGP_AJ_G0029622.1 mouse_genomes_project 5 74349282 74378146 - MGP_AJ_P0072374 Hopx protein_coding protein_coding MGP_AJ_T0072375.1 MGP_AJ_G0029622.1 mouse_genomes_project 5 74349282 74358018 - MGP_AJ_P0072375 Hopx protein_coding protein_coding MGP_AJ_T0102639.1 MGP_AJ_G0040381.1 mouse_genomes_project 5 84565424 84598323 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0004750.1 MGP_AJ_G0004102.1 mouse_genomes_project 5 97658540 97660342 + Gm17092 antisense antisense MGP_AJ_T0075673.1 MGP_AJ_G0030283.1 mouse_genomes_project 5 141477974 141525872 - MGP_AJ_P0075673 Mmd2 protein_coding protein_coding MGP_AJ_T0075674.1 MGP_AJ_G0030283.1 mouse_genomes_project 5 141497587 141499463 - Mmd2 protein_coding retained_intron MGP_AJ_T0075675.1 MGP_AJ_G0030283.1 mouse_genomes_project 5 141498889 141525872 - Mmd2 protein_coding processed_transcript MGP_AJ_T0001447.1 MGP_AJ_G0001368.1 mouse_genomes_project 5 8946298 8953686 - TEC TEC MGP_AJ_T0102634.1 MGP_AJ_G0040376.1 mouse_genomes_project 5 84254083 84268963 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0101292.1 MGP_AJ_G0039258.1 mouse_genomes_project 5 71349871 71349992 + Snora26 snoRNA snoRNA MGP_AJ_T0001540.1 MGP_AJ_G0001458.1 mouse_genomes_project 5 41800863 41804650 - TEC TEC MGP_AJ_T0071405.1 MGP_AJ_G0029455.1 mouse_genomes_project 5 33658170 33667176 + MGP_AJ_P0071405 Grpel1 protein_coding protein_coding MGP_AJ_T0075735.1 MGP_AJ_G0030296.1 mouse_genomes_project 5 142233072 142237670 - MGP_AJ_P0075735 Zfp853 protein_coding protein_coding MGP_AJ_T0073560.1 MGP_AJ_G0029894.1 mouse_genomes_project 5 112155523 112221296 - MGP_AJ_P0073560 Svop protein_coding protein_coding MGP_AJ_T0073561.1 MGP_AJ_G0029894.1 mouse_genomes_project 5 112156738 112194785 - Svop protein_coding processed_transcript MGP_AJ_T0073562.1 MGP_AJ_G0029894.1 mouse_genomes_project 5 112163560 112171565 - Svop protein_coding retained_intron MGP_AJ_T0073563.1 MGP_AJ_G0029894.1 mouse_genomes_project 5 112182450 112221106 - Svop protein_coding retained_intron MGP_AJ_T0073564.1 MGP_AJ_G0029894.1 mouse_genomes_project 5 112183217 112221093 - MGP_AJ_P0073564 Svop protein_coding protein_coding MGP_AJ_T0101274.1 MGP_AJ_G0039240.1 mouse_genomes_project 5 18052343 18052462 - Gm22490 snoRNA snoRNA MGP_AJ_T0001671.1 MGP_AJ_G0001587.1 mouse_genomes_project 5 65339295 65341004 - TEC TEC MGP_AJ_T0001626.1 MGP_AJ_G0001542.1 mouse_genomes_project 5 61438424 61440737 + TEC TEC MGP_AJ_T0074358.1 MGP_AJ_G0030039.1 mouse_genomes_project 5 121975594 121987995 - MGP_AJ_P0074358 Diablo protein_coding nonsense_mediated_decay MGP_AJ_T0074359.1 MGP_AJ_G0030039.1 mouse_genomes_project 5 121975620 121987973 - MGP_AJ_P0074359 Diablo protein_coding protein_coding MGP_AJ_T0074360.1 MGP_AJ_G0030039.1 mouse_genomes_project 5 121975971 121989282 - MGP_AJ_P0074360 Diablo protein_coding nonsense_mediated_decay MGP_AJ_T0074361.1 MGP_AJ_G0030039.1 mouse_genomes_project 5 121979699 121987989 - MGP_AJ_P0074361 Diablo protein_coding protein_coding MGP_AJ_T0074362.1 MGP_AJ_G0030039.1 mouse_genomes_project 5 121980154 121987986 - MGP_AJ_P0074362 Diablo protein_coding protein_coding MGP_AJ_T0074363.1 MGP_AJ_G0030039.1 mouse_genomes_project 5 121981477 121987986 - MGP_AJ_P0074363 Diablo protein_coding protein_coding MGP_AJ_T0074364.1 MGP_AJ_G0030039.1 mouse_genomes_project 5 121981828 121987348 - Diablo protein_coding retained_intron MGP_AJ_T0074365.1 MGP_AJ_G0030039.1 mouse_genomes_project 5 121981929 121984647 - Diablo protein_coding retained_intron MGP_AJ_T0074366.1 MGP_AJ_G0030039.1 mouse_genomes_project 5 121988350 121989341 - Diablo protein_coding processed_transcript MGP_AJ_T0015050.1 MGP_AJ_G0013145.1 mouse_genomes_project 5 84385351 84385427 - processed_pseudogene processed_pseudogene MGP_AJ_T0014867.1 MGP_AJ_G0012962.1 mouse_genomes_project 5 12795847 12796256 + processed_pseudogene processed_pseudogene MGP_AJ_T0001603.1 MGP_AJ_G0001520.1 mouse_genomes_project 5 52967753 52971457 - TEC TEC MGP_AJ_T0015110.1 MGP_AJ_G0013205.1 mouse_genomes_project 5 106382741 106383073 + processed_pseudogene processed_pseudogene MGP_AJ_T0074608.1 MGP_AJ_G0030075.1 mouse_genomes_project 5 123818126 123819522 - MGP_AJ_P0074608 protein_coding protein_coding MGP_AJ_T0004876.1 MGP_AJ_G0004192.1 mouse_genomes_project 5 140496972 140519938 - Gm16036 antisense antisense MGP_AJ_T0015045.1 MGP_AJ_G0013140.1 mouse_genomes_project 5 81913282 81914396 + processed_pseudogene processed_pseudogene MGP_AJ_T0001461.1 MGP_AJ_G0001382.1 mouse_genomes_project 5 11476383 11480941 + TEC TEC MGP_AJ_T0071480.1 MGP_AJ_G0029470.1 mouse_genomes_project 5 35004478 35008552 - MGP_AJ_P0071480 Msx1 protein_coding protein_coding MGP_AJ_T0071481.1 MGP_AJ_G0029470.1 mouse_genomes_project 5 35006692 35008551 - Msx1 protein_coding retained_intron MGP_AJ_T0100031.1 MGP_AJ_G0037997.1 mouse_genomes_project 5 84200029 84200135 - Gm24121 snRNA snRNA MGP_AJ_T0015092.1 MGP_AJ_G0013187.1 mouse_genomes_project 5 102589552 102590059 - processed_pseudogene processed_pseudogene MGP_AJ_T0015074.1 MGP_AJ_G0013169.1 mouse_genomes_project 5 90844350 90846811 - processed_pseudogene processed_pseudogene MGP_AJ_T0075727.1 MGP_AJ_G0030294.1 mouse_genomes_project 5 142178263 142191708 + MGP_AJ_P0075727 Zfp12 protein_coding protein_coding MGP_AJ_T0075728.1 MGP_AJ_G0030294.1 mouse_genomes_project 5 142178274 142192594 + MGP_AJ_P0075728 Zfp12 protein_coding protein_coding MGP_AJ_T0075729.1 MGP_AJ_G0030294.1 mouse_genomes_project 5 142178347 142191716 + MGP_AJ_P0075729 Zfp12 protein_coding nonsense_mediated_decay MGP_AJ_T0075730.1 MGP_AJ_G0030294.1 mouse_genomes_project 5 142178879 142183840 + MGP_AJ_P0075730 Zfp12 protein_coding protein_coding MGP_AJ_T0075731.1 MGP_AJ_G0030294.1 mouse_genomes_project 5 142183798 142188390 + Zfp12 protein_coding processed_transcript MGP_AJ_T0001555.1 MGP_AJ_G0001473.1 mouse_genomes_project 5 45304932 45306545 + TEC TEC MGP_AJ_T0074141.1 MGP_AJ_G0030006.1 mouse_genomes_project 5 120515745 120521761 + MGP_AJ_P0074141 Myl2 protein_coding protein_coding MGP_AJ_T0074142.1 MGP_AJ_G0030006.1 mouse_genomes_project 5 120515751 120520067 + MGP_AJ_P0074142 Myl2 protein_coding protein_coding MGP_AJ_T0074143.1 MGP_AJ_G0030006.1 mouse_genomes_project 5 120515774 120519679 + MGP_AJ_P0074143 Myl2 protein_coding protein_coding MGP_AJ_T0074144.1 MGP_AJ_G0030006.1 mouse_genomes_project 5 120515777 120528405 + MGP_AJ_P0074144 Myl2 protein_coding protein_coding MGP_AJ_T0074145.1 MGP_AJ_G0030006.1 mouse_genomes_project 5 120515826 120519810 + MGP_AJ_P0074145 Myl2 protein_coding protein_coding MGP_AJ_T0074146.1 MGP_AJ_G0030006.1 mouse_genomes_project 5 120515955 120517548 + Myl2 protein_coding processed_transcript MGP_AJ_T0074147.1 MGP_AJ_G0030006.1 mouse_genomes_project 5 120516179 120519662 + MGP_AJ_P0074147 Myl2 protein_coding protein_coding MGP_AJ_T0074148.1 MGP_AJ_G0030006.1 mouse_genomes_project 5 120516374 120518704 + MGP_AJ_P0074148 Myl2 protein_coding protein_coding MGP_AJ_T0074149.1 MGP_AJ_G0030006.1 mouse_genomes_project 5 120516591 120519480 + MGP_AJ_P0074149 Myl2 protein_coding protein_coding MGP_AJ_T0074150.1 MGP_AJ_G0030006.1 mouse_genomes_project 5 120517974 120521755 + Myl2 protein_coding processed_transcript MGP_AJ_T0074151.1 MGP_AJ_G0030006.1 mouse_genomes_project 5 120517976 120521761 + Myl2 protein_coding processed_transcript MGP_AJ_T0074152.1 MGP_AJ_G0030006.1 mouse_genomes_project 5 120518688 120519777 + MGP_AJ_P0074152 Myl2 protein_coding protein_coding MGP_AJ_T0008457.1 MGP_AJ_G0006858.1 mouse_genomes_project 5 147967835 147972771 + 4930505K14Rik lincRNA lincRNA MGP_AJ_T0001523.1 MGP_AJ_G0001441.1 mouse_genomes_project 5 40426025 40427598 + TEC TEC MGP_AJ_T0101303.1 MGP_AJ_G0039269.1 mouse_genomes_project 5 97330242 97330374 + Gm25969 snoRNA snoRNA MGP_AJ_T0072385.1 MGP_AJ_G0029626.1 mouse_genomes_project 5 74581575 74621435 + MGP_AJ_P0072385 Polr2b protein_coding protein_coding MGP_AJ_T0072386.1 MGP_AJ_G0029626.1 mouse_genomes_project 5 74581919 74584709 + Polr2b protein_coding retained_intron MGP_AJ_T0072387.1 MGP_AJ_G0029626.1 mouse_genomes_project 5 74598009 74599225 + Polr2b protein_coding retained_intron MGP_AJ_T0072388.1 MGP_AJ_G0029626.1 mouse_genomes_project 5 74612479 74615048 + Polr2b protein_coding retained_intron MGP_AJ_T0015123.1 MGP_AJ_G0013218.1 mouse_genomes_project 5 108970935 108971606 + processed_pseudogene processed_pseudogene MGP_AJ_T0008218.1 MGP_AJ_G0006697.1 mouse_genomes_project 5 94567660 94583395 + Gm8013 lincRNA lincRNA MGP_AJ_T0018135.1 MGP_AJ_G0015572.1 mouse_genomes_project 5 41242336 41263730 - Gm42716 processed_transcript sense_intronic MGP_AJ_T0018136.1 MGP_AJ_G0015572.1 mouse_genomes_project 5 41258490 41263674 - Gm42716 processed_transcript sense_intronic MGP_AJ_T0018137.1 MGP_AJ_G0015572.1 mouse_genomes_project 5 41263225 41264995 - Gm42716 processed_transcript retained_intron MGP_AJ_T0014910.1 MGP_AJ_G0013005.1 mouse_genomes_project 5 22416713 22416963 - processed_pseudogene processed_pseudogene MGP_AJ_T0075945.1 MGP_AJ_G0030346.1 mouse_genomes_project 5 145275350 145277048 - MGP_AJ_P0075945 Gm3404 protein_coding protein_coding MGP_AJ_T0001768.1 MGP_AJ_G0001683.1 mouse_genomes_project 5 111982374 111985603 + TEC TEC MGP_AJ_T0072458.1 MGP_AJ_G0029637.1 mouse_genomes_project 5 83684635 83737845 - MGP_AJ_P0072458 Tmprss11a protein_coding protein_coding MGP_AJ_T0072459.1 MGP_AJ_G0029637.1 mouse_genomes_project 5 83689509 83692566 - Tmprss11a protein_coding retained_intron MGP_AJ_T0070876.1 MGP_AJ_G0029377.1 mouse_genomes_project 5 28164440 28165207 - MGP_AJ_P0070876 Ucn protein_coding protein_coding MGP_AJ_T0070877.1 MGP_AJ_G0029377.1 mouse_genomes_project 5 28164440 28165207 - MGP_AJ_P0070877 Ucn protein_coding protein_coding MGP_AJ_T0008086.1 MGP_AJ_G0006595.1 mouse_genomes_project 5 26916146 26921457 - Gm42450 lincRNA lincRNA MGP_AJ_T0073841.1 MGP_AJ_G0029946.1 mouse_genomes_project 5 114624771 114639209 - MGP_AJ_P0073841 Srrm4 protein_coding protein_coding MGP_AJ_T0073842.1 MGP_AJ_G0029946.1 mouse_genomes_project 5 114624781 114639333 - Srrm4 protein_coding retained_intron MGP_AJ_T0073843.1 MGP_AJ_G0029946.1 mouse_genomes_project 5 114624782 114781349 - MGP_AJ_P0073843 Srrm4 protein_coding protein_coding MGP_AJ_T0073844.1 MGP_AJ_G0029946.1 mouse_genomes_project 5 114662899 114663678 - Srrm4 protein_coding retained_intron MGP_AJ_T0074706.1 MGP_AJ_G0030097.1 mouse_genomes_project 5 128214038 128247156 + MGP_AJ_P0074706 Gbas protein_coding protein_coding MGP_AJ_T0074707.1 MGP_AJ_G0030097.1 mouse_genomes_project 5 128214074 128247079 + MGP_AJ_P0074707 Gbas protein_coding nonsense_mediated_decay MGP_AJ_T0074708.1 MGP_AJ_G0030097.1 mouse_genomes_project 5 128214076 128246206 + MGP_AJ_P0074708 Gbas protein_coding nonsense_mediated_decay MGP_AJ_T0074709.1 MGP_AJ_G0030097.1 mouse_genomes_project 5 128241513 128246035 + Gbas protein_coding retained_intron MGP_AJ_T0074710.1 MGP_AJ_G0030097.1 mouse_genomes_project 5 128242085 128243690 + Gbas protein_coding processed_transcript MGP_AJ_T0072010.1 MGP_AJ_G0029558.1 mouse_genomes_project 5 63925620 63936960 + MGP_AJ_P0072010 Uchl1 protein_coding protein_coding MGP_AJ_T0072011.1 MGP_AJ_G0029558.1 mouse_genomes_project 5 63925771 63926377 + Uchl1 protein_coding retained_intron MGP_AJ_T0072012.1 MGP_AJ_G0029558.1 mouse_genomes_project 5 63926423 63936955 + Uchl1 protein_coding retained_intron MGP_AJ_T0072013.1 MGP_AJ_G0029558.1 mouse_genomes_project 5 63933224 63936663 + Uchl1 protein_coding retained_intron MGP_AJ_T0075323.1 MGP_AJ_G0030206.1 mouse_genomes_project 5 136206995 136208529 + MGP_AJ_P0075323 Sap25 protein_coding protein_coding MGP_AJ_T0075324.1 MGP_AJ_G0030206.1 mouse_genomes_project 5 136207098 136208563 + MGP_AJ_P0075324 Sap25 protein_coding protein_coding MGP_AJ_T0075325.1 MGP_AJ_G0030206.1 mouse_genomes_project 5 136207156 136208002 + Sap25 protein_coding retained_intron MGP_AJ_T0075326.1 MGP_AJ_G0030206.1 mouse_genomes_project 5 136207604 136208208 + Sap25 protein_coding retained_intron MGP_AJ_T0075327.1 MGP_AJ_G0030206.1 mouse_genomes_project 5 136207838 136208498 + Sap25 protein_coding retained_intron MGP_AJ_T0075328.1 MGP_AJ_G0030206.1 mouse_genomes_project 5 136208009 136208560 + Sap25 protein_coding retained_intron MGP_AJ_T0073269.1 MGP_AJ_G0029830.1 mouse_genomes_project 5 106646079 106994031 - MGP_AJ_P0073269 protein_coding protein_coding MGP_AJ_T0071521.1 MGP_AJ_G0029476.1 mouse_genomes_project 5 35459379 35488281 + MGP_AJ_P0071521 Otop1 protein_coding protein_coding MGP_AJ_T0071522.1 MGP_AJ_G0029476.1 mouse_genomes_project 5 35460808 35488289 + Otop1 protein_coding processed_transcript MGP_AJ_T0071523.1 MGP_AJ_G0029476.1 mouse_genomes_project 5 35460808 35488280 + MGP_AJ_P0071523 Otop1 protein_coding protein_coding MGP_AJ_T0071524.1 MGP_AJ_G0029476.1 mouse_genomes_project 5 35469394 35487449 + Otop1 protein_coding processed_transcript MGP_AJ_T0074170.1 MGP_AJ_G0030009.1 mouse_genomes_project 5 120619331 120647533 + MGP_AJ_P0074170 Hvcn1 protein_coding protein_coding MGP_AJ_T0074171.1 MGP_AJ_G0030009.1 mouse_genomes_project 5 120622260 120656879 + MGP_AJ_P0074171 Hvcn1 protein_coding protein_coding MGP_AJ_T0074172.1 MGP_AJ_G0030009.1 mouse_genomes_project 5 120622440 120653075 + MGP_AJ_P0074172 Hvcn1 protein_coding protein_coding MGP_AJ_T0074173.1 MGP_AJ_G0030009.1 mouse_genomes_project 5 120622644 120651777 + MGP_AJ_P0074173 Hvcn1 protein_coding protein_coding MGP_AJ_T0074174.1 MGP_AJ_G0030009.1 mouse_genomes_project 5 120622665 120656879 + MGP_AJ_P0074174 Hvcn1 protein_coding protein_coding MGP_AJ_T0102650.1 MGP_AJ_G0040392.1 mouse_genomes_project 5 139338722 139361233 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0001856.1 MGP_AJ_G0001770.1 mouse_genomes_project 5 130413545 130416974 - TEC TEC MGP_AJ_T0010720.1 MGP_AJ_G0008842.1 mouse_genomes_project 5 134396725 134396803 - Gm23268 miRNA miRNA MGP_AJ_T0098694.1 MGP_AJ_G0036678.1 mouse_genomes_project 5 88358526 88358643 + Gm22816 rRNA rRNA MGP_AJ_T0099053.1 MGP_AJ_G0037030.1 mouse_genomes_project 5 120817321 120819908 + Gm42829 sense_intronic sense_intronic MGP_AJ_T0008281.1 MGP_AJ_G0006741.1 mouse_genomes_project 5 108469130 108471372 + Gm26711 lincRNA lincRNA MGP_AJ_T0010697.1 MGP_AJ_G0008819.1 mouse_genomes_project 5 101986604 101986714 + Gm23616 miRNA miRNA MGP_AJ_T0071074.1 MGP_AJ_G0029406.1 mouse_genomes_project 5 30005506 30029203 + MGP_AJ_P0071074 Depdc5 protein_coding protein_coding MGP_AJ_T0071075.1 MGP_AJ_G0029406.1 mouse_genomes_project 5 30005511 30038753 + MGP_AJ_P0071075 Depdc5 protein_coding protein_coding MGP_AJ_T0071076.1 MGP_AJ_G0029406.1 mouse_genomes_project 5 30005518 30009813 + MGP_AJ_P0071076 Depdc5 protein_coding protein_coding MGP_AJ_T0071077.1 MGP_AJ_G0029406.1 mouse_genomes_project 5 30005526 30098911 + MGP_AJ_P0071077 Depdc5 protein_coding protein_coding MGP_AJ_T0071078.1 MGP_AJ_G0029406.1 mouse_genomes_project 5 30005527 30137312 + MGP_AJ_P0071078 Depdc5 protein_coding protein_coding MGP_AJ_T0071079.1 MGP_AJ_G0029406.1 mouse_genomes_project 5 30005539 30137530 + MGP_AJ_P0071079 Depdc5 protein_coding protein_coding MGP_AJ_T0071080.1 MGP_AJ_G0029406.1 mouse_genomes_project 5 30005565 30049706 + Depdc5 protein_coding retained_intron MGP_AJ_T0071081.1 MGP_AJ_G0029406.1 mouse_genomes_project 5 30005575 30029822 + Depdc5 protein_coding retained_intron MGP_AJ_T0071082.1 MGP_AJ_G0029406.1 mouse_genomes_project 5 30005575 30066700 + MGP_AJ_P0071082 Depdc5 protein_coding nonsense_mediated_decay MGP_AJ_T0071083.1 MGP_AJ_G0029406.1 mouse_genomes_project 5 30005577 30020743 + MGP_AJ_P0071083 Depdc5 protein_coding protein_coding MGP_AJ_T0071084.1 MGP_AJ_G0029406.1 mouse_genomes_project 5 30005582 30098909 + Depdc5 protein_coding processed_transcript MGP_AJ_T0071085.1 MGP_AJ_G0029406.1 mouse_genomes_project 5 30005960 30009825 + MGP_AJ_P0071085 Depdc5 protein_coding protein_coding MGP_AJ_T0071086.1 MGP_AJ_G0029406.1 mouse_genomes_project 5 30006392 30134964 + MGP_AJ_P0071086 Depdc5 protein_coding protein_coding MGP_AJ_T0071087.1 MGP_AJ_G0029406.1 mouse_genomes_project 5 30047222 30060895 + MGP_AJ_P0071087 Depdc5 protein_coding nonsense_mediated_decay MGP_AJ_T0071088.1 MGP_AJ_G0029406.1 mouse_genomes_project 5 30066725 30134957 + MGP_AJ_P0071088 Depdc5 protein_coding nonsense_mediated_decay MGP_AJ_T0071089.1 MGP_AJ_G0029406.1 mouse_genomes_project 5 30066823 30134964 + MGP_AJ_P0071089 Depdc5 protein_coding protein_coding MGP_AJ_T0071090.1 MGP_AJ_G0029406.1 mouse_genomes_project 5 30086343 30087557 + Depdc5 protein_coding retained_intron MGP_AJ_T0071091.1 MGP_AJ_G0029406.1 mouse_genomes_project 5 30086638 30107311 + MGP_AJ_P0071091 Depdc5 protein_coding protein_coding MGP_AJ_T0071092.1 MGP_AJ_G0029406.1 mouse_genomes_project 5 30110302 30116500 + Depdc5 protein_coding retained_intron MGP_AJ_T0073633.1 MGP_AJ_G0029908.1 mouse_genomes_project 5 112850595 112865137 + MGP_AJ_P0073633 Tchp protein_coding protein_coding MGP_AJ_T0073634.1 MGP_AJ_G0029908.1 mouse_genomes_project 5 112850654 112852250 + Tchp protein_coding processed_transcript MGP_AJ_T0073635.1 MGP_AJ_G0029908.1 mouse_genomes_project 5 112850699 112865137 + Tchp protein_coding retained_intron MGP_AJ_T0073636.1 MGP_AJ_G0029908.1 mouse_genomes_project 5 112853875 112856708 + Tchp protein_coding retained_intron MGP_AJ_T0073637.1 MGP_AJ_G0029908.1 mouse_genomes_project 5 112857446 112862499 + MGP_AJ_P0073637 Tchp protein_coding protein_coding MGP_AJ_T0073638.1 MGP_AJ_G0029908.1 mouse_genomes_project 5 112857770 112865137 + Tchp protein_coding processed_transcript MGP_AJ_T0073639.1 MGP_AJ_G0029908.1 mouse_genomes_project 5 112860369 112861529 + Tchp protein_coding retained_intron MGP_AJ_T0073640.1 MGP_AJ_G0029908.1 mouse_genomes_project 5 112862493 112863968 + Tchp protein_coding retained_intron MGP_AJ_T0004894.1 MGP_AJ_G0004205.1 mouse_genomes_project 5 149515373 149530666 - Gm42556 antisense antisense MGP_AJ_T0001579.1 MGP_AJ_G0001496.1 mouse_genomes_project 5 46385571 46385959 - TEC TEC MGP_AJ_T0014913.1 MGP_AJ_G0013008.1 mouse_genomes_project 5 22696362 22696723 + processed_pseudogene processed_pseudogene MGP_AJ_T0004813.1 MGP_AJ_G0004147.1 mouse_genomes_project 5 119726848 119728420 + Gm42918 antisense antisense MGP_AJ_T0074644.1 MGP_AJ_G0030085.1 mouse_genomes_project 5 126234455 126884175 - MGP_AJ_P0074644 Tmem132d protein_coding protein_coding MGP_AJ_T0074645.1 MGP_AJ_G0030085.1 mouse_genomes_project 5 126716189 126723254 - Tmem132d protein_coding processed_transcript MGP_AJ_T0074646.1 MGP_AJ_G0030085.1 mouse_genomes_project 5 126716294 126723192 - Tmem132d protein_coding processed_transcript MGP_AJ_T0015133.1 MGP_AJ_G0013228.1 mouse_genomes_project 5 113207643 113208015 - processed_pseudogene processed_pseudogene MGP_AJ_T0101279.1 MGP_AJ_G0039245.1 mouse_genomes_project 5 50147030 50147142 - Gm23532 snoRNA snoRNA MGP_AJ_T0004708.1 MGP_AJ_G0004071.1 mouse_genomes_project 5 64247296 64247847 - Gm15949 antisense antisense MGP_AJ_T0072796.1 MGP_AJ_G0029729.1 mouse_genomes_project 5 93725199 93736550 - Cnot6l protein_coding retained_intron MGP_AJ_T0072797.1 MGP_AJ_G0029729.1 mouse_genomes_project 5 93725212 93823857 - MGP_AJ_P0072797 Cnot6l protein_coding nonsense_mediated_decay MGP_AJ_T0072798.1 MGP_AJ_G0029729.1 mouse_genomes_project 5 93725360 93823857 - MGP_AJ_P0072798 Cnot6l protein_coding protein_coding MGP_AJ_T0072799.1 MGP_AJ_G0029729.1 mouse_genomes_project 5 93726803 93824055 - MGP_AJ_P0072799 Cnot6l protein_coding protein_coding MGP_AJ_T0072800.1 MGP_AJ_G0029729.1 mouse_genomes_project 5 93761488 93786739 - Cnot6l protein_coding retained_intron MGP_AJ_T0072801.1 MGP_AJ_G0029729.1 mouse_genomes_project 5 93762177 93823844 - MGP_AJ_P0072801 Cnot6l protein_coding protein_coding MGP_AJ_T0072802.1 MGP_AJ_G0029729.1 mouse_genomes_project 5 93786739 93823973 - MGP_AJ_P0072802 Cnot6l protein_coding protein_coding MGP_AJ_T0072803.1 MGP_AJ_G0029729.1 mouse_genomes_project 5 93786775 93826273 - MGP_AJ_P0072803 Cnot6l protein_coding protein_coding MGP_AJ_T0072804.1 MGP_AJ_G0029729.1 mouse_genomes_project 5 93786886 93823865 - MGP_AJ_P0072804 Cnot6l protein_coding protein_coding MGP_AJ_T0072596.1 MGP_AJ_G0029682.1 mouse_genomes_project 5 86981110 87029450 + MGP_AJ_P0072596 Npffr2 protein_coding protein_coding MGP_AJ_T0101278.1 MGP_AJ_G0039244.1 mouse_genomes_project 5 36712621 36712750 - Gm25377 snoRNA snoRNA MGP_AJ_T0100013.1 MGP_AJ_G0037979.1 mouse_genomes_project 5 66633391 66633498 - Gm23932 snRNA snRNA MGP_AJ_T0100032.1 MGP_AJ_G0037998.1 mouse_genomes_project 5 89768552 89768671 + Gm23031 snRNA snRNA MGP_AJ_T0074086.1 MGP_AJ_G0029999.1 mouse_genomes_project 5 119951167 120005596 - MGP_AJ_P0074086 protein_coding protein_coding MGP_AJ_T0074087.1 MGP_AJ_G0029999.1 mouse_genomes_project 5 119951297 119952372 - protein_coding processed_transcript MGP_AJ_T0074088.1 MGP_AJ_G0029999.1 mouse_genomes_project 5 119991858 120001075 - MGP_AJ_P0074088 protein_coding protein_coding MGP_AJ_T0008370.1 MGP_AJ_G0006795.1 mouse_genomes_project 5 121572382 121575014 + 4932422M17Rik lincRNA lincRNA MGP_AJ_T0011609.1 MGP_AJ_G0009731.1 mouse_genomes_project 5 110318426 110318576 - Gm27627 misc_RNA misc_RNA MGP_AJ_T0072454.1 MGP_AJ_G0029635.1 mouse_genomes_project 5 83499046 83561682 - MGP_AJ_P0072454 Tmprss11c protein_coding protein_coding MGP_AJ_T0072455.1 MGP_AJ_G0029635.1 mouse_genomes_project 5 83499317 83561634 - MGP_AJ_P0072455 Tmprss11c protein_coding protein_coding MGP_AJ_T0004661.1 MGP_AJ_G0004033.1 mouse_genomes_project 5 29077373 29082261 - Gm17130 antisense antisense MGP_AJ_T0010689.1 MGP_AJ_G0008811.1 mouse_genomes_project 5 80727234 80727317 + Gm44303 miRNA miRNA MGP_AJ_T0073989.1 MGP_AJ_G0029977.1 mouse_genomes_project 5 118979304 118998610 - MGP_AJ_P0073989 Oas2 protein_coding protein_coding MGP_AJ_T0073990.1 MGP_AJ_G0029977.1 mouse_genomes_project 5 118979305 118998610 - MGP_AJ_P0073990 Oas2 protein_coding protein_coding MGP_AJ_T0073991.1 MGP_AJ_G0029977.1 mouse_genomes_project 5 118979307 118984555 - Oas2 protein_coding retained_intron MGP_AJ_T0073992.1 MGP_AJ_G0029977.1 mouse_genomes_project 5 118982255 118987365 - MGP_AJ_P0073992 Oas2 protein_coding protein_coding MGP_AJ_T0075763.1 MGP_AJ_G0030302.1 mouse_genomes_project 5 142452839 142477400 - MGP_AJ_P0075763 Rac1 protein_coding protein_coding MGP_AJ_T0075764.1 MGP_AJ_G0030302.1 mouse_genomes_project 5 142454687 142477357 - MGP_AJ_P0075764 Rac1 protein_coding protein_coding MGP_AJ_T0075765.1 MGP_AJ_G0030302.1 mouse_genomes_project 5 142456265 142467475 - Rac1 protein_coding processed_transcript MGP_AJ_T0075766.1 MGP_AJ_G0030302.1 mouse_genomes_project 5 142463888 142466901 - Rac1 protein_coding processed_transcript MGP_AJ_T0001645.1 MGP_AJ_G0001561.1 mouse_genomes_project 5 63095547 63096248 + TEC TEC MGP_AJ_T0014916.1 MGP_AJ_G0013011.1 mouse_genomes_project 5 23831012 23831418 - processed_pseudogene processed_pseudogene MGP_AJ_T0001700.1 MGP_AJ_G0001615.1 mouse_genomes_project 5 72276449 72279295 - TEC TEC MGP_AJ_T0075058.1 MGP_AJ_G0030159.1 mouse_genomes_project 5 134362108 134401257 + Srrm3 protein_coding retained_intron MGP_AJ_T0075059.1 MGP_AJ_G0030159.1 mouse_genomes_project 5 134362115 134411526 + MGP_AJ_P0075059 Srrm3 protein_coding protein_coding MGP_AJ_T0075060.1 MGP_AJ_G0030159.1 mouse_genomes_project 5 134373383 134432400 + MGP_AJ_P0075060 Srrm3 protein_coding nonsense_mediated_decay MGP_AJ_T0075061.1 MGP_AJ_G0030159.1 mouse_genomes_project 5 134373383 134434063 + MGP_AJ_P0075061 Srrm3 protein_coding protein_coding MGP_AJ_T0075062.1 MGP_AJ_G0030159.1 mouse_genomes_project 5 134413724 134416836 + Srrm3 protein_coding retained_intron MGP_AJ_T0075063.1 MGP_AJ_G0030159.1 mouse_genomes_project 5 134425917 134427509 + Srrm3 protein_coding retained_intron MGP_AJ_T0070757.1 MGP_AJ_G0029359.1 mouse_genomes_project 5 27664832 27675136 + MGP_AJ_P0070757 Slc35f6 protein_coding protein_coding MGP_AJ_T0070758.1 MGP_AJ_G0029359.1 mouse_genomes_project 5 27664844 27670176 + Slc35f6 protein_coding retained_intron MGP_AJ_T0070759.1 MGP_AJ_G0029359.1 mouse_genomes_project 5 27664858 27675083 + MGP_AJ_P0070759 Slc35f6 protein_coding nonsense_mediated_decay MGP_AJ_T0070760.1 MGP_AJ_G0029359.1 mouse_genomes_project 5 27664867 27672992 + Slc35f6 protein_coding retained_intron MGP_AJ_T0070761.1 MGP_AJ_G0029359.1 mouse_genomes_project 5 27664903 27675083 + MGP_AJ_P0070761 Slc35f6 protein_coding nonsense_mediated_decay MGP_AJ_T0070762.1 MGP_AJ_G0029359.1 mouse_genomes_project 5 27664913 27676672 + MGP_AJ_P0070762 Slc35f6 protein_coding protein_coding MGP_AJ_T0001465.1 MGP_AJ_G0001386.1 mouse_genomes_project 5 13037568 13040220 + TEC TEC MGP_AJ_T0070314.1 MGP_AJ_G0029268.1 mouse_genomes_project 5 14302976 14308715 + MGP_AJ_P0070314 protein_coding protein_coding MGP_AJ_T0073641.1 MGP_AJ_G0029909.1 mouse_genomes_project 5 112870214 112916270 - MGP_AJ_P0073641 Git2 protein_coding protein_coding MGP_AJ_T0073642.1 MGP_AJ_G0029909.1 mouse_genomes_project 5 112870215 112916267 - MGP_AJ_P0073642 Git2 protein_coding protein_coding MGP_AJ_T0073643.1 MGP_AJ_G0029909.1 mouse_genomes_project 5 112870218 112886599 - MGP_AJ_P0073643 Git2 protein_coding protein_coding MGP_AJ_T0073644.1 MGP_AJ_G0029909.1 mouse_genomes_project 5 112870218 112916209 - MGP_AJ_P0073644 Git2 protein_coding protein_coding MGP_AJ_T0073645.1 MGP_AJ_G0029909.1 mouse_genomes_project 5 112870218 112916267 - MGP_AJ_P0073645 Git2 protein_coding protein_coding MGP_AJ_T0073646.1 MGP_AJ_G0029909.1 mouse_genomes_project 5 112872382 112916237 - MGP_AJ_P0073646 Git2 protein_coding protein_coding MGP_AJ_T0073647.1 MGP_AJ_G0029909.1 mouse_genomes_project 5 112872677 112916270 - MGP_AJ_P0073647 Git2 protein_coding protein_coding MGP_AJ_T0073648.1 MGP_AJ_G0029909.1 mouse_genomes_project 5 112876025 112876976 - Git2 protein_coding processed_transcript MGP_AJ_T0073649.1 MGP_AJ_G0029909.1 mouse_genomes_project 5 112876673 112891000 - MGP_AJ_P0073649 Git2 protein_coding protein_coding MGP_AJ_T0073650.1 MGP_AJ_G0029909.1 mouse_genomes_project 5 112881109 112884093 - Git2 protein_coding retained_intron MGP_AJ_T0073651.1 MGP_AJ_G0029909.1 mouse_genomes_project 5 112890049 112916270 - Git2 protein_coding retained_intron MGP_AJ_T0073652.1 MGP_AJ_G0029909.1 mouse_genomes_project 5 112890937 112909290 - MGP_AJ_P0073652 Git2 protein_coding protein_coding MGP_AJ_T0073653.1 MGP_AJ_G0029909.1 mouse_genomes_project 5 112897020 112904458 - Git2 protein_coding retained_intron MGP_AJ_T0073654.1 MGP_AJ_G0029909.1 mouse_genomes_project 5 112907117 112918292 - MGP_AJ_P0073654 Git2 protein_coding protein_coding MGP_AJ_T0073655.1 MGP_AJ_G0029909.1 mouse_genomes_project 5 112907221 112916270 - Git2 protein_coding processed_transcript MGP_AJ_T0073656.1 MGP_AJ_G0029909.1 mouse_genomes_project 5 112907308 112909922 - Git2 protein_coding processed_transcript MGP_AJ_T0073657.1 MGP_AJ_G0029909.1 mouse_genomes_project 5 112908441 112916242 - Git2 protein_coding retained_intron MGP_AJ_T0073471.1 MGP_AJ_G0029877.1 mouse_genomes_project 5 111030090 111137522 - MGP_AJ_P0073471 Adrbk2 protein_coding protein_coding MGP_AJ_T0073472.1 MGP_AJ_G0029877.1 mouse_genomes_project 5 111032207 111137522 - MGP_AJ_P0073472 Adrbk2 protein_coding nonsense_mediated_decay MGP_AJ_T0073473.1 MGP_AJ_G0029877.1 mouse_genomes_project 5 111035717 111043976 - Adrbk2 protein_coding retained_intron MGP_AJ_T0073474.1 MGP_AJ_G0029877.1 mouse_genomes_project 5 111037333 111137799 - MGP_AJ_P0073474 Adrbk2 protein_coding protein_coding MGP_AJ_T0073475.1 MGP_AJ_G0029877.1 mouse_genomes_project 5 111039665 111045402 - Adrbk2 protein_coding retained_intron MGP_AJ_T0073476.1 MGP_AJ_G0029877.1 mouse_genomes_project 5 111079137 111137511 - MGP_AJ_P0073476 Adrbk2 protein_coding protein_coding MGP_AJ_T0010736.1 MGP_AJ_G0008858.1 mouse_genomes_project 5 142094519 142094645 + Gm44405 miRNA miRNA MGP_AJ_T0008378.1 MGP_AJ_G0006802.1 mouse_genomes_project 5 124366270 124391202 + 1700048F04Rik lincRNA lincRNA MGP_AJ_T0001519.1 MGP_AJ_G0001437.1 mouse_genomes_project 5 36636541 36638114 - TEC TEC MGP_AJ_T0070466.1 MGP_AJ_G0029298.1 mouse_genomes_project 5 20752952 20755245 + MGP_AJ_P0070466 Rint1 protein_coding protein_coding MGP_AJ_T0070467.1 MGP_AJ_G0029298.1 mouse_genomes_project 5 20752952 20785366 + MGP_AJ_P0070467 Rint1 protein_coding protein_coding MGP_AJ_T0070468.1 MGP_AJ_G0029298.1 mouse_genomes_project 5 20752953 20759142 + MGP_AJ_P0070468 Rint1 protein_coding protein_coding MGP_AJ_T0070469.1 MGP_AJ_G0029298.1 mouse_genomes_project 5 20752956 20785294 + MGP_AJ_P0070469 Rint1 protein_coding protein_coding MGP_AJ_T0070470.1 MGP_AJ_G0029298.1 mouse_genomes_project 5 20752960 20785365 + Rint1 protein_coding retained_intron MGP_AJ_T0070471.1 MGP_AJ_G0029298.1 mouse_genomes_project 5 20752962 20755270 + Rint1 protein_coding retained_intron MGP_AJ_T0070472.1 MGP_AJ_G0029298.1 mouse_genomes_project 5 20752982 20762299 + Rint1 protein_coding processed_transcript MGP_AJ_T0070473.1 MGP_AJ_G0029298.1 mouse_genomes_project 5 20771623 20775094 + Rint1 protein_coding retained_intron MGP_AJ_T0070474.1 MGP_AJ_G0029298.1 mouse_genomes_project 5 20776689 20780633 + Rint1 protein_coding processed_transcript MGP_AJ_T0075758.1 MGP_AJ_G0030300.1 mouse_genomes_project 5 142355485 142372955 + MGP_AJ_P0075758 Kdelr2 protein_coding protein_coding MGP_AJ_T0015108.1 MGP_AJ_G0013203.1 mouse_genomes_project 5 106004519 106005104 - processed_pseudogene processed_pseudogene MGP_AJ_T0010684.1 MGP_AJ_G0008806.1 mouse_genomes_project 5 66582077 66582183 + Gm24368 miRNA miRNA MGP_AJ_T0014991.1 MGP_AJ_G0013086.1 mouse_genomes_project 5 56689660 56690039 + processed_pseudogene processed_pseudogene MGP_AJ_T0071071.1 MGP_AJ_G0029405.1 mouse_genomes_project 5 29929748 29995360 - MGP_AJ_P0071071 Prr14l protein_coding protein_coding MGP_AJ_T0071072.1 MGP_AJ_G0029405.1 mouse_genomes_project 5 29934169 29936635 - Prr14l protein_coding retained_intron MGP_AJ_T0071073.1 MGP_AJ_G0029405.1 mouse_genomes_project 5 29975372 29995301 - MGP_AJ_P0071073 Prr14l protein_coding protein_coding MGP_AJ_T0071100.1 MGP_AJ_G0029410.1 mouse_genomes_project 5 30390780 30418082 - MGP_AJ_P0071100 Ctbp1 protein_coding protein_coding MGP_AJ_T0071101.1 MGP_AJ_G0029410.1 mouse_genomes_project 5 30390811 30418080 - MGP_AJ_P0071101 Ctbp1 protein_coding protein_coding MGP_AJ_T0071102.1 MGP_AJ_G0029410.1 mouse_genomes_project 5 30391082 30418069 - MGP_AJ_P0071102 Ctbp1 protein_coding protein_coding MGP_AJ_T0071103.1 MGP_AJ_G0029410.1 mouse_genomes_project 5 30391225 30392308 - Ctbp1 protein_coding retained_intron MGP_AJ_T0071104.1 MGP_AJ_G0029410.1 mouse_genomes_project 5 30391318 30392611 - Ctbp1 protein_coding retained_intron MGP_AJ_T0071105.1 MGP_AJ_G0029410.1 mouse_genomes_project 5 30391557 30418032 - MGP_AJ_P0071105 Ctbp1 protein_coding protein_coding MGP_AJ_T0071106.1 MGP_AJ_G0029410.1 mouse_genomes_project 5 30393440 30412568 - MGP_AJ_P0071106 Ctbp1 protein_coding nonsense_mediated_decay MGP_AJ_T0071107.1 MGP_AJ_G0029410.1 mouse_genomes_project 5 30393915 30418067 - MGP_AJ_P0071107 Ctbp1 protein_coding protein_coding MGP_AJ_T0071108.1 MGP_AJ_G0029410.1 mouse_genomes_project 5 30402356 30412716 - MGP_AJ_P0071108 Ctbp1 protein_coding protein_coding MGP_AJ_T0071109.1 MGP_AJ_G0029410.1 mouse_genomes_project 5 30403698 30412604 - Ctbp1 protein_coding retained_intron MGP_AJ_T0071110.1 MGP_AJ_G0029410.1 mouse_genomes_project 5 30404114 30417669 - MGP_AJ_P0071110 Ctbp1 protein_coding protein_coding MGP_AJ_T0071111.1 MGP_AJ_G0029410.1 mouse_genomes_project 5 30410031 30417680 - MGP_AJ_P0071111 Ctbp1 protein_coding protein_coding MGP_AJ_T0008129.1 MGP_AJ_G0006623.1 mouse_genomes_project 5 40976867 40977906 - Gm42555 lincRNA lincRNA MGP_AJ_T0015114.1 MGP_AJ_G0013209.1 mouse_genomes_project 5 106944078 106944796 - processed_pseudogene processed_pseudogene MGP_AJ_T0074230.1 MGP_AJ_G0030020.1 mouse_genomes_project 5 121055249 121095546 + MGP_AJ_P0074230 P2rx7 protein_coding protein_coding MGP_AJ_T0074231.1 MGP_AJ_G0030020.1 mouse_genomes_project 5 121055249 121095538 + MGP_AJ_P0074231 P2rx7 protein_coding protein_coding MGP_AJ_T0074232.1 MGP_AJ_G0030020.1 mouse_genomes_project 5 121055277 121102671 + MGP_AJ_P0074232 P2rx7 protein_coding protein_coding MGP_AJ_T0074233.1 MGP_AJ_G0030020.1 mouse_genomes_project 5 121055347 121066827 + MGP_AJ_P0074233 P2rx7 protein_coding protein_coding MGP_AJ_T0074234.1 MGP_AJ_G0030020.1 mouse_genomes_project 5 121055503 121059129 + P2rx7 protein_coding processed_transcript MGP_AJ_T0074235.1 MGP_AJ_G0030020.1 mouse_genomes_project 5 121061982 121092629 + P2rx7 protein_coding processed_transcript MGP_AJ_T0074236.1 MGP_AJ_G0030020.1 mouse_genomes_project 5 121093197 121094795 + P2rx7 protein_coding processed_transcript MGP_AJ_T0074237.1 MGP_AJ_G0030020.1 mouse_genomes_project 5 121093437 121095533 + P2rx7 protein_coding retained_intron MGP_AJ_T0004768.1 MGP_AJ_G0004116.1 mouse_genomes_project 5 108344198 108357699 + Gm15788 antisense antisense MGP_AJ_T0075293.1 MGP_AJ_G0030201.1 mouse_genomes_project 5 136160003 136164799 - MGP_AJ_P0075293 Mospd3 protein_coding protein_coding MGP_AJ_T0075294.1 MGP_AJ_G0030201.1 mouse_genomes_project 5 136160005 136165135 - MGP_AJ_P0075294 Mospd3 protein_coding protein_coding MGP_AJ_T0075295.1 MGP_AJ_G0030201.1 mouse_genomes_project 5 136160577 136164891 - Mospd3 protein_coding processed_transcript MGP_AJ_T0075296.1 MGP_AJ_G0030201.1 mouse_genomes_project 5 136160629 136165149 - MGP_AJ_P0075296 Mospd3 protein_coding protein_coding MGP_AJ_T0075297.1 MGP_AJ_G0030201.1 mouse_genomes_project 5 136164124 136164815 - MGP_AJ_P0075297 Mospd3 protein_coding protein_coding MGP_AJ_T0075298.1 MGP_AJ_G0030201.1 mouse_genomes_project 5 136164173 136164782 - Mospd3 protein_coding retained_intron MGP_AJ_T0075434.1 MGP_AJ_G0030233.1 mouse_genomes_project 5 136994010 137001922 - MGP_AJ_P0075434 Gal3st4 protein_coding protein_coding MGP_AJ_T0075435.1 MGP_AJ_G0030233.1 mouse_genomes_project 5 136994014 137001836 - MGP_AJ_P0075435 Gal3st4 protein_coding protein_coding MGP_AJ_T0075436.1 MGP_AJ_G0030233.1 mouse_genomes_project 5 136994027 137001883 - Gal3st4 protein_coding processed_transcript MGP_AJ_T0075437.1 MGP_AJ_G0030233.1 mouse_genomes_project 5 136994027 137001883 - MGP_AJ_P0075437 Gal3st4 protein_coding protein_coding MGP_AJ_T0075439.1 MGP_AJ_G0030233.1 mouse_genomes_project 5 137000074 137001831 - MGP_AJ_P0075439 Gal3st4 protein_coding protein_coding MGP_AJ_T0014954.1 MGP_AJ_G0013049.1 mouse_genomes_project 5 38581988 38583854 + processed_pseudogene processed_pseudogene MGP_AJ_T0075555.1 MGP_AJ_G0030255.1 mouse_genomes_project 5 138333697 138346996 - MGP_AJ_P0075555 Zfand2a protein_coding protein_coding MGP_AJ_T0075556.1 MGP_AJ_G0030255.1 mouse_genomes_project 5 138333702 138346964 - MGP_AJ_P0075556 Zfand2a protein_coding protein_coding MGP_AJ_T0075557.1 MGP_AJ_G0030255.1 mouse_genomes_project 5 138337404 138341429 - Zfand2a protein_coding processed_transcript MGP_AJ_T0075558.1 MGP_AJ_G0030255.1 mouse_genomes_project 5 138340967 138346911 - MGP_AJ_P0075558 Zfand2a protein_coding protein_coding MGP_AJ_T0075559.1 MGP_AJ_G0030255.1 mouse_genomes_project 5 138341562 138346875 - Zfand2a protein_coding processed_transcript MGP_AJ_T0004633.1 MGP_AJ_G0004011.1 mouse_genomes_project 5 4838383 4854612 - Gm15731 antisense antisense MGP_AJ_T0074490.1 MGP_AJ_G0030057.1 mouse_genomes_project 5 122798833 122811353 + MGP_AJ_P0074490 2810006K23Rik protein_coding protein_coding MGP_AJ_T0074491.1 MGP_AJ_G0030057.1 mouse_genomes_project 5 122798842 122813075 + MGP_AJ_P0074491 2810006K23Rik protein_coding protein_coding MGP_AJ_T0008272.1 MGP_AJ_G0006736.1 mouse_genomes_project 5 106222276 106225973 + Gm43082 lincRNA lincRNA MGP_AJ_T0099036.1 MGP_AJ_G0037013.1 mouse_genomes_project 5 2116379 2119010 - Gm43727 sense_intronic sense_intronic MGP_AJ_T0100014.1 MGP_AJ_G0037980.1 mouse_genomes_project 5 66984861 66984987 - Gm26044 snRNA snRNA MGP_AJ_T0001742.1 MGP_AJ_G0001657.1 mouse_genomes_project 5 103295601 103297786 + TEC TEC MGP_AJ_T0014955.1 MGP_AJ_G0013050.1 mouse_genomes_project 5 38670952 38671421 - processed_pseudogene processed_pseudogene MGP_AJ_T0015193.1 MGP_AJ_G0013288.1 mouse_genomes_project 5 143324081 143324294 + processed_pseudogene processed_pseudogene MGP_AJ_T0073929.1 MGP_AJ_G0029963.1 mouse_genomes_project 5 118060328 118068385 + MGP_AJ_P0073929 Tbx5 protein_coding protein_coding MGP_AJ_T0073930.1 MGP_AJ_G0029963.1 mouse_genomes_project 5 118062303 118112637 + MGP_AJ_P0073930 Tbx5 protein_coding protein_coding MGP_AJ_T0073931.1 MGP_AJ_G0029963.1 mouse_genomes_project 5 118063658 118072563 + MGP_AJ_P0073931 Tbx5 protein_coding protein_coding MGP_AJ_T0071399.1 MGP_AJ_G0029453.1 mouse_genomes_project 5 33208831 33589533 - MGP_AJ_P0071399 Sorcs2 protein_coding protein_coding MGP_AJ_T0071400.1 MGP_AJ_G0029453.1 mouse_genomes_project 5 33253479 33589516 - Sorcs2 protein_coding retained_intron MGP_AJ_T0071401.1 MGP_AJ_G0029453.1 mouse_genomes_project 5 33257767 33458710 - MGP_AJ_P0071401 Sorcs2 protein_coding protein_coding MGP_AJ_T0071402.1 MGP_AJ_G0029453.1 mouse_genomes_project 5 33344554 33589548 - MGP_AJ_P0071402 Sorcs2 protein_coding protein_coding MGP_AJ_T0071403.1 MGP_AJ_G0029453.1 mouse_genomes_project 5 33345584 33556424 - Sorcs2 protein_coding processed_transcript MGP_AJ_T0075405.1 MGP_AJ_G0030226.1 mouse_genomes_project 5 136786372 136794800 + MGP_AJ_P0075405 Ap4m1 protein_coding protein_coding MGP_AJ_T0075406.1 MGP_AJ_G0030226.1 mouse_genomes_project 5 136786375 136789391 + MGP_AJ_P0075406 Ap4m1 protein_coding protein_coding MGP_AJ_T0075407.1 MGP_AJ_G0030226.1 mouse_genomes_project 5 136786417 136788750 + Ap4m1 protein_coding retained_intron MGP_AJ_T0075408.1 MGP_AJ_G0030226.1 mouse_genomes_project 5 136786438 136793059 + MGP_AJ_P0075408 Ap4m1 protein_coding nonsense_mediated_decay MGP_AJ_T0075409.1 MGP_AJ_G0030226.1 mouse_genomes_project 5 136786953 136789322 + Ap4m1 protein_coding retained_intron MGP_AJ_T0075410.1 MGP_AJ_G0030226.1 mouse_genomes_project 5 136789163 136791578 + Ap4m1 protein_coding retained_intron MGP_AJ_T0075411.1 MGP_AJ_G0030226.1 mouse_genomes_project 5 136790946 136793065 + Ap4m1 protein_coding retained_intron MGP_AJ_T0072873.1 MGP_AJ_G0029748.1 mouse_genomes_project 5 97709019 97711511 - Hnrnpdl protein_coding processed_transcript MGP_AJ_T0072874.1 MGP_AJ_G0029748.1 mouse_genomes_project 5 97709019 97714659 - MGP_AJ_P0072874 Hnrnpdl protein_coding protein_coding MGP_AJ_T0072875.1 MGP_AJ_G0029748.1 mouse_genomes_project 5 97710163 97714306 - MGP_AJ_P0072875 Hnrnpdl protein_coding protein_coding MGP_AJ_T0072876.1 MGP_AJ_G0029748.1 mouse_genomes_project 5 97710169 97715101 - MGP_AJ_P0072876 Hnrnpdl protein_coding nonsense_mediated_decay MGP_AJ_T0072877.1 MGP_AJ_G0029748.1 mouse_genomes_project 5 97710270 97712168 - Hnrnpdl protein_coding retained_intron MGP_AJ_T0072878.1 MGP_AJ_G0029748.1 mouse_genomes_project 5 97711402 97712566 - Hnrnpdl protein_coding retained_intron MGP_AJ_T0008099.1 MGP_AJ_G0006605.1 mouse_genomes_project 5 32542868 32549192 + 4930478P22Rik lincRNA lincRNA MGP_AJ_T0008100.1 MGP_AJ_G0006605.1 mouse_genomes_project 5 32542880 32549428 + 4930478P22Rik lincRNA lincRNA MGP_AJ_T0008101.1 MGP_AJ_G0006605.1 mouse_genomes_project 5 32542886 32548654 + 4930478P22Rik lincRNA lincRNA MGP_AJ_T0075206.1 MGP_AJ_G0030185.1 mouse_genomes_project 5 135679105 135689681 - MGP_AJ_P0075206 Trim56 protein_coding protein_coding MGP_AJ_T0075207.1 MGP_AJ_G0030185.1 mouse_genomes_project 5 135687497 135689683 - MGP_AJ_P0075207 Trim56 protein_coding protein_coding MGP_AJ_T0073668.1 MGP_AJ_G0029915.1 mouse_genomes_project 5 113013557 113016482 - MGP_AJ_P0073668 Gm9936 protein_coding protein_coding MGP_AJ_T0001744.1 MGP_AJ_G0001659.1 mouse_genomes_project 5 104467948 104470886 - TEC TEC MGP_AJ_T0098849.1 MGP_AJ_G0036833.1 mouse_genomes_project 5 133578323 133578452 - Gm25492 scaRNA scaRNA MGP_AJ_T0075641.1 MGP_AJ_G0030275.1 mouse_genomes_project 5 139609174 139613392 + Amz1 protein_coding processed_transcript MGP_AJ_T0075642.1 MGP_AJ_G0030275.1 mouse_genomes_project 5 139609174 139641220 + MGP_AJ_P0075642 Amz1 protein_coding protein_coding MGP_AJ_T0075643.1 MGP_AJ_G0030275.1 mouse_genomes_project 5 139609185 139609845 + Amz1 protein_coding processed_transcript MGP_AJ_T0075644.1 MGP_AJ_G0030275.1 mouse_genomes_project 5 139621490 139642601 + MGP_AJ_P0075644 Amz1 protein_coding protein_coding MGP_AJ_T0075645.1 MGP_AJ_G0030275.1 mouse_genomes_project 5 139621531 139627941 + Amz1 protein_coding processed_transcript MGP_AJ_T0075646.1 MGP_AJ_G0030275.1 mouse_genomes_project 5 139631169 139636175 + Amz1 protein_coding retained_intron MGP_AJ_T0075647.1 MGP_AJ_G0030275.1 mouse_genomes_project 5 139637243 139649349 + MGP_AJ_P0075647 Amz1 protein_coding nonsense_mediated_decay MGP_AJ_T0070733.1 MGP_AJ_G0029353.1 mouse_genomes_project 5 27286541 27326781 + MGP_AJ_P0070733 protein_coding protein_coding MGP_AJ_T0070734.1 MGP_AJ_G0029353.1 mouse_genomes_project 5 27286595 27288634 + protein_coding retained_intron MGP_AJ_T0070735.1 MGP_AJ_G0029353.1 mouse_genomes_project 5 27286600 27305331 + protein_coding retained_intron MGP_AJ_T0070736.1 MGP_AJ_G0029353.1 mouse_genomes_project 5 27286607 27312839 + protein_coding retained_intron MGP_AJ_T0070737.1 MGP_AJ_G0029353.1 mouse_genomes_project 5 27286610 27312078 + MGP_AJ_P0070737 protein_coding nonsense_mediated_decay MGP_AJ_T0070738.1 MGP_AJ_G0029353.1 mouse_genomes_project 5 27286634 27323327 + MGP_AJ_P0070738 protein_coding nonsense_mediated_decay MGP_AJ_T0070739.1 MGP_AJ_G0029353.1 mouse_genomes_project 5 27317370 27321348 + protein_coding retained_intron MGP_AJ_T0070740.1 MGP_AJ_G0029353.1 mouse_genomes_project 5 27317850 27321602 + protein_coding processed_transcript MGP_AJ_T0001756.1 MGP_AJ_G0001671.1 mouse_genomes_project 5 109286000 109286540 + TEC TEC MGP_AJ_T0099049.1 MGP_AJ_G0037026.1 mouse_genomes_project 5 103381663 103382994 + C230066G23Rik sense_intronic sense_intronic MGP_AJ_T0004677.1 MGP_AJ_G0004049.1 mouse_genomes_project 5 35915501 35929115 + Clnkos antisense antisense MGP_AJ_T0004678.1 MGP_AJ_G0004049.1 mouse_genomes_project 5 35915502 35929115 + Clnkos antisense antisense MGP_AJ_T0004857.1 MGP_AJ_G0004179.1 mouse_genomes_project 5 134402382 134404262 - Srrm3os antisense antisense MGP_AJ_T0001542.1 MGP_AJ_G0001460.1 mouse_genomes_project 5 41856630 41860917 - TEC TEC MGP_AJ_T0073069.1 MGP_AJ_G0029793.1 mouse_genomes_project 5 104262578 104268219 - MGP_AJ_P0073069 Barhl2 protein_coding protein_coding MGP_AJ_T0074691.1 MGP_AJ_G0030094.1 mouse_genomes_project 5 128143979 128159492 - MGP_AJ_P0074691 Zfp11 protein_coding protein_coding MGP_AJ_T0070688.1 MGP_AJ_G0029344.1 mouse_genomes_project 5 26758483 26758783 - MGP_AJ_P0070688 Gm5129 protein_coding protein_coding MGP_AJ_T0004811.1 MGP_AJ_G0004145.1 mouse_genomes_project 5 119026547 119056086 + Gm43069 antisense antisense MGP_AJ_T0072625.1 MGP_AJ_G0029688.1 mouse_genomes_project 5 87949195 87967354 + MGP_AJ_P0072625 Afp protein_coding protein_coding MGP_AJ_T0072626.1 MGP_AJ_G0029688.1 mouse_genomes_project 5 87949197 87954500 + MGP_AJ_P0072626 Afp protein_coding protein_coding MGP_AJ_T0072627.1 MGP_AJ_G0029688.1 mouse_genomes_project 5 87949684 87954550 + Afp protein_coding retained_intron MGP_AJ_T0072628.1 MGP_AJ_G0029688.1 mouse_genomes_project 5 87959977 87962616 + Afp protein_coding retained_intron MGP_AJ_T0072629.1 MGP_AJ_G0029688.1 mouse_genomes_project 5 87965877 87967299 + Afp protein_coding retained_intron MGP_AJ_T0099034.1 MGP_AJ_G0037011.1 mouse_genomes_project 5 1664952 1666871 - Gm43111 sense_intronic sense_intronic MGP_AJ_T0008418.1 MGP_AJ_G0006825.1 mouse_genomes_project 5 133442509 133443362 + 4933439J24Rik lincRNA lincRNA MGP_AJ_T0076173.1 MGP_AJ_G0030386.1 mouse_genomes_project 5 149908356 150058218 + MGP_AJ_P0076173 Pds5b protein_coding protein_coding MGP_AJ_T0076174.1 MGP_AJ_G0030386.1 mouse_genomes_project 5 149908356 150059043 + MGP_AJ_P0076174 Pds5b protein_coding protein_coding MGP_AJ_T0076175.1 MGP_AJ_G0030386.1 mouse_genomes_project 5 149908444 150059020 + MGP_AJ_P0076175 Pds5b protein_coding protein_coding MGP_AJ_T0076176.1 MGP_AJ_G0030386.1 mouse_genomes_project 5 149994938 149995730 + Pds5b protein_coding retained_intron MGP_AJ_T0076177.1 MGP_AJ_G0030386.1 mouse_genomes_project 5 150004181 150045151 + MGP_AJ_P0076177 Pds5b protein_coding protein_coding MGP_AJ_T0076178.1 MGP_AJ_G0030386.1 mouse_genomes_project 5 150007242 150017727 + Pds5b protein_coding processed_transcript MGP_AJ_T0076179.1 MGP_AJ_G0030386.1 mouse_genomes_project 5 150041422 150047440 + Pds5b protein_coding processed_transcript MGP_AJ_T0076180.1 MGP_AJ_G0030386.1 mouse_genomes_project 5 150052540 150058833 + Pds5b protein_coding retained_intron MGP_AJ_T0015059.1 MGP_AJ_G0013154.1 mouse_genomes_project 5 85571816 85572195 + processed_pseudogene processed_pseudogene MGP_AJ_T0001584.1 MGP_AJ_G0001501.1 mouse_genomes_project 5 47217958 47220525 + TEC TEC MGP_AJ_T0011606.1 MGP_AJ_G0009728.1 mouse_genomes_project 5 109422058 109422218 - Gm27680 misc_RNA misc_RNA MGP_AJ_T0072955.1 MGP_AJ_G0029761.1 mouse_genomes_project 5 99371011 99377859 - MGP_AJ_P0072955 Nkx6-1 protein_coding protein_coding MGP_AJ_T0001537.1 MGP_AJ_G0001455.1 mouse_genomes_project 5 41686854 41687757 - TEC TEC MGP_AJ_T0071956.1 MGP_AJ_G0029552.1 mouse_genomes_project 5 63097509 63133483 + MGP_AJ_P0071956 Rhoh protein_coding protein_coding MGP_AJ_T0071957.1 MGP_AJ_G0029552.1 mouse_genomes_project 5 63099662 63130226 + MGP_AJ_P0071957 Rhoh protein_coding protein_coding MGP_AJ_T0071958.1 MGP_AJ_G0029552.1 mouse_genomes_project 5 63100235 63104591 + Rhoh protein_coding processed_transcript MGP_AJ_T0071959.1 MGP_AJ_G0029552.1 mouse_genomes_project 5 63100273 63105051 + Rhoh protein_coding retained_intron MGP_AJ_T0102661.1 MGP_AJ_G0040403.1 mouse_genomes_project 5 150868697 150876115 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0008158.1 MGP_AJ_G0006649.1 mouse_genomes_project 5 61687651 61694616 + C030018K13Rik lincRNA lincRNA MGP_AJ_T0008159.1 MGP_AJ_G0006649.1 mouse_genomes_project 5 61687657 61690394 + C030018K13Rik lincRNA lincRNA MGP_AJ_T0008160.1 MGP_AJ_G0006649.1 mouse_genomes_project 5 61687678 61693114 + C030018K13Rik lincRNA lincRNA MGP_AJ_T0008178.1 MGP_AJ_G0006662.1 mouse_genomes_project 5 71987788 71990697 - Gm15985 lincRNA lincRNA MGP_AJ_T0101308.1 MGP_AJ_G0039274.1 mouse_genomes_project 5 105747544 105747676 + Gm22270 snoRNA snoRNA MGP_AJ_T0001539.1 MGP_AJ_G0001457.1 mouse_genomes_project 5 41762190 41762329 + TEC TEC MGP_AJ_T0099993.1 MGP_AJ_G0037959.1 mouse_genomes_project 5 20801674 20801829 - Gm22054 snRNA snRNA MGP_AJ_T0100057.1 MGP_AJ_G0038023.1 mouse_genomes_project 5 124831331 124831438 - Gm23151 snRNA snRNA MGP_AJ_T0014845.1 MGP_AJ_G0012940.1 mouse_genomes_project 5 1558312 1559144 + processed_pseudogene processed_pseudogene MGP_AJ_T0074386.1 MGP_AJ_G0030042.1 mouse_genomes_project 5 122155180 122178150 - MGP_AJ_P0074386 Zcchc8 protein_coding protein_coding MGP_AJ_T0074387.1 MGP_AJ_G0030042.1 mouse_genomes_project 5 122155188 122178094 - MGP_AJ_P0074387 Zcchc8 protein_coding protein_coding MGP_AJ_T0074388.1 MGP_AJ_G0030042.1 mouse_genomes_project 5 122156684 122160304 - Zcchc8 protein_coding retained_intron MGP_AJ_T0074389.1 MGP_AJ_G0030042.1 mouse_genomes_project 5 122161385 122176553 - MGP_AJ_P0074389 Zcchc8 protein_coding nonsense_mediated_decay MGP_AJ_T0074390.1 MGP_AJ_G0030042.1 mouse_genomes_project 5 122161402 122165347 - Zcchc8 protein_coding retained_intron MGP_AJ_T0074391.1 MGP_AJ_G0030042.1 mouse_genomes_project 5 122165152 122170916 - MGP_AJ_P0074391 Zcchc8 protein_coding protein_coding MGP_AJ_T0074392.1 MGP_AJ_G0030042.1 mouse_genomes_project 5 122166059 122177873 - MGP_AJ_P0074392 Zcchc8 protein_coding nonsense_mediated_decay MGP_AJ_T0074393.1 MGP_AJ_G0030042.1 mouse_genomes_project 5 122167600 122177912 - MGP_AJ_P0074393 Zcchc8 protein_coding nonsense_mediated_decay MGP_AJ_T0074394.1 MGP_AJ_G0030042.1 mouse_genomes_project 5 122170924 122177824 - MGP_AJ_P0074394 Zcchc8 protein_coding protein_coding MGP_AJ_T0072668.1 MGP_AJ_G0029704.1 mouse_genomes_project 5 88983090 89093960 + MGP_AJ_P0072668 Parm1 protein_coding protein_coding MGP_AJ_T0015220.1 MGP_AJ_G0013315.1 mouse_genomes_project 5 149681532 149682097 + processed_pseudogene processed_pseudogene MGP_AJ_T0008414.1 MGP_AJ_G0006821.1 mouse_genomes_project 5 131022222 131023381 + Gm28616 lincRNA lincRNA MGP_AJ_T0001576.1 MGP_AJ_G0001493.1 mouse_genomes_project 5 46246042 46248939 - TEC TEC MGP_AJ_T0014949.1 MGP_AJ_G0013044.1 mouse_genomes_project 5 35678536 35678740 + processed_pseudogene processed_pseudogene MGP_AJ_T0001807.1 MGP_AJ_G0001722.1 mouse_genomes_project 5 120892487 120894649 - TEC TEC MGP_AJ_T0075549.1 MGP_AJ_G0030253.1 mouse_genomes_project 5 138264205 138275271 + MGP_AJ_P0075549 C130050O18Rik protein_coding protein_coding MGP_AJ_T0075550.1 MGP_AJ_G0030253.1 mouse_genomes_project 5 138265300 138275268 + MGP_AJ_P0075550 C130050O18Rik protein_coding protein_coding MGP_AJ_T0075551.1 MGP_AJ_G0030253.1 mouse_genomes_project 5 138265378 138275273 + MGP_AJ_P0075551 C130050O18Rik protein_coding nonsense_mediated_decay MGP_AJ_T0070754.1 MGP_AJ_G0029357.1 mouse_genomes_project 5 27496955 27560072 - MGP_AJ_P0070754 Cib4 protein_coding protein_coding MGP_AJ_T0072114.1 MGP_AJ_G0029578.1 mouse_genomes_project 5 69369473 69381081 - MGP_AJ_P0072114 Commd8 protein_coding protein_coding MGP_AJ_T0072115.1 MGP_AJ_G0029578.1 mouse_genomes_project 5 69370083 69381056 - MGP_AJ_P0072115 Commd8 protein_coding nonsense_mediated_decay MGP_AJ_T0072116.1 MGP_AJ_G0029578.1 mouse_genomes_project 5 69371909 69374037 - Commd8 protein_coding retained_intron MGP_AJ_T0072117.1 MGP_AJ_G0029578.1 mouse_genomes_project 5 69372774 69378612 - Commd8 protein_coding processed_transcript MGP_AJ_T0072118.1 MGP_AJ_G0029578.1 mouse_genomes_project 5 69373860 69381048 - MGP_AJ_P0072118 Commd8 protein_coding protein_coding MGP_AJ_T0073493.1 MGP_AJ_G0029880.1 mouse_genomes_project 5 111208549 111286794 - MGP_AJ_P0073493 2900026A02Rik protein_coding protein_coding MGP_AJ_T0073494.1 MGP_AJ_G0029880.1 mouse_genomes_project 5 111214624 111260176 - MGP_AJ_P0073494 2900026A02Rik protein_coding unknown_likely_coding MGP_AJ_T0101282.1 MGP_AJ_G0039248.1 mouse_genomes_project 5 54288162 54288285 + Gm24902 snoRNA snoRNA MGP_AJ_T0076181.1 MGP_AJ_G0030387.1 mouse_genomes_project 5 150203659 150245259 + MGP_AJ_P0076181 Kl protein_coding protein_coding MGP_AJ_T0076182.1 MGP_AJ_G0030387.1 mouse_genomes_project 5 150203756 150238421 + Kl protein_coding retained_intron MGP_AJ_T0008262.1 MGP_AJ_G0006727.1 mouse_genomes_project 5 104158361 104171197 + Gm42914 lincRNA lincRNA MGP_AJ_T0101287.1 MGP_AJ_G0039253.1 mouse_genomes_project 5 59690365 59690497 - Gm24079 snoRNA snoRNA MGP_AJ_T0001816.1 MGP_AJ_G0001731.1 mouse_genomes_project 5 121861772 121862637 + TEC TEC MGP_AJ_T0075618.1 MGP_AJ_G0030272.1 mouse_genomes_project 5 139506847 139510961 - MGP_AJ_P0075618 Ttyh3 protein_coding protein_coding MGP_AJ_T0075619.1 MGP_AJ_G0030272.1 mouse_genomes_project 5 139507220 139532493 - MGP_AJ_P0075619 Ttyh3 protein_coding protein_coding MGP_AJ_T0075620.1 MGP_AJ_G0030272.1 mouse_genomes_project 5 139514810 139515282 - Ttyh3 protein_coding retained_intron MGP_AJ_T0075621.1 MGP_AJ_G0030272.1 mouse_genomes_project 5 139515191 139520131 - Ttyh3 protein_coding retained_intron MGP_AJ_T0075622.1 MGP_AJ_G0030272.1 mouse_genomes_project 5 139532136 139532663 - Ttyh3 protein_coding processed_transcript MGP_AJ_T0008076.1 MGP_AJ_G0006590.1 mouse_genomes_project 5 22641686 22643145 + Gm43972 lincRNA lincRNA MGP_AJ_T0004812.1 MGP_AJ_G0004146.1 mouse_genomes_project 5 119724819 119734538 + Gm42917 antisense antisense MGP_AJ_T0073150.1 MGP_AJ_G0029809.1 mouse_genomes_project 5 105579989 105715097 - MGP_AJ_P0073150 Evi5 protein_coding protein_coding MGP_AJ_T0073151.1 MGP_AJ_G0029809.1 mouse_genomes_project 5 105582470 105647127 - Evi5 protein_coding retained_intron MGP_AJ_T0073152.1 MGP_AJ_G0029809.1 mouse_genomes_project 5 105601219 105636893 - Evi5 protein_coding retained_intron MGP_AJ_T0073153.1 MGP_AJ_G0029809.1 mouse_genomes_project 5 105625427 105709097 - MGP_AJ_P0073153 Evi5 protein_coding protein_coding MGP_AJ_T0073154.1 MGP_AJ_G0029809.1 mouse_genomes_project 5 105650960 105709097 - MGP_AJ_P0073154 Evi5 protein_coding protein_coding MGP_AJ_T0073155.1 MGP_AJ_G0029809.1 mouse_genomes_project 5 105652545 105654194 - Evi5 protein_coding retained_intron MGP_AJ_T0073156.1 MGP_AJ_G0029809.1 mouse_genomes_project 5 105652995 105715034 - Evi5 protein_coding processed_transcript MGP_AJ_T0073157.1 MGP_AJ_G0029809.1 mouse_genomes_project 5 105652995 105715049 - MGP_AJ_P0073157 Evi5 protein_coding protein_coding MGP_AJ_T0073158.1 MGP_AJ_G0029809.1 mouse_genomes_project 5 105657015 105676241 - Evi5 protein_coding retained_intron MGP_AJ_T0073159.1 MGP_AJ_G0029809.1 mouse_genomes_project 5 105657051 105708317 - MGP_AJ_P0073159 Evi5 protein_coding protein_coding MGP_AJ_T0073160.1 MGP_AJ_G0029809.1 mouse_genomes_project 5 105659610 105708828 - Evi5 protein_coding processed_transcript MGP_AJ_T0073162.1 MGP_AJ_G0029809.1 mouse_genomes_project 5 105689459 105715046 - Evi5 protein_coding processed_transcript MGP_AJ_T0073163.1 MGP_AJ_G0029809.1 mouse_genomes_project 5 105712547 105715042 - Evi5 protein_coding processed_transcript MGP_AJ_T0072586.1 MGP_AJ_G0029680.1 mouse_genomes_project 5 86354135 86706542 + MGP_AJ_P0072586 Slc4a4 protein_coding protein_coding MGP_AJ_T0072587.1 MGP_AJ_G0029680.1 mouse_genomes_project 5 86354578 86355604 + Slc4a4 protein_coding processed_transcript MGP_AJ_T0072588.1 MGP_AJ_G0029680.1 mouse_genomes_project 5 86354614 86701757 + MGP_AJ_P0072588 Slc4a4 protein_coding protein_coding MGP_AJ_T0072589.1 MGP_AJ_G0029680.1 mouse_genomes_project 5 86354616 86702683 + MGP_AJ_P0072589 Slc4a4 protein_coding protein_coding MGP_AJ_T0072590.1 MGP_AJ_G0029680.1 mouse_genomes_project 5 86402108 86425597 + MGP_AJ_P0072590 Slc4a4 protein_coding protein_coding MGP_AJ_T0072591.1 MGP_AJ_G0029680.1 mouse_genomes_project 5 86488825 86701751 + MGP_AJ_P0072591 Slc4a4 protein_coding protein_coding MGP_AJ_T0072592.1 MGP_AJ_G0029680.1 mouse_genomes_project 5 86488936 86503220 + MGP_AJ_P0072592 Slc4a4 protein_coding protein_coding MGP_AJ_T0072593.1 MGP_AJ_G0029680.1 mouse_genomes_project 5 86488951 86579097 + MGP_AJ_P0072593 Slc4a4 protein_coding protein_coding MGP_AJ_T0075946.1 MGP_AJ_G0030347.1 mouse_genomes_project 5 145357903 145370944 - MGP_AJ_P0075946 Rnf6 protein_coding protein_coding MGP_AJ_T0075947.1 MGP_AJ_G0030347.1 mouse_genomes_project 5 145357907 145370285 - MGP_AJ_P0075947 Rnf6 protein_coding protein_coding MGP_AJ_T0075948.1 MGP_AJ_G0030347.1 mouse_genomes_project 5 145358667 145370360 - MGP_AJ_P0075948 Rnf6 protein_coding protein_coding MGP_AJ_T0075949.1 MGP_AJ_G0030347.1 mouse_genomes_project 5 145360013 145367201 - MGP_AJ_P0075949 Rnf6 protein_coding protein_coding MGP_AJ_T0075950.1 MGP_AJ_G0030347.1 mouse_genomes_project 5 145360386 145370807 - MGP_AJ_P0075950 Rnf6 protein_coding protein_coding MGP_AJ_T0075951.1 MGP_AJ_G0030347.1 mouse_genomes_project 5 145360414 145370319 - MGP_AJ_P0075951 Rnf6 protein_coding protein_coding MGP_AJ_T0075952.1 MGP_AJ_G0030347.1 mouse_genomes_project 5 145360563 145370332 - MGP_AJ_P0075952 Rnf6 protein_coding protein_coding MGP_AJ_T0075953.1 MGP_AJ_G0030347.1 mouse_genomes_project 5 145367290 145370330 - Rnf6 protein_coding processed_transcript MGP_AJ_T0072597.1 MGP_AJ_G0029683.1 mouse_genomes_project 5 87124457 87337319 - MGP_AJ_P0072597 Adamts3 protein_coding protein_coding MGP_AJ_T0072598.1 MGP_AJ_G0029683.1 mouse_genomes_project 5 87124457 87337319 - MGP_AJ_P0072598 Adamts3 protein_coding protein_coding MGP_AJ_T0072599.1 MGP_AJ_G0029683.1 mouse_genomes_project 5 87281067 87337718 - MGP_AJ_P0072599 Adamts3 protein_coding protein_coding MGP_AJ_T0072600.1 MGP_AJ_G0029683.1 mouse_genomes_project 5 87315666 87336531 - Adamts3 protein_coding processed_transcript MGP_AJ_T0074623.1 MGP_AJ_G0030081.1 mouse_genomes_project 5 123966059 124058008 + MGP_AJ_P0074623 Tmem132b protein_coding protein_coding MGP_AJ_T0074624.1 MGP_AJ_G0030081.1 mouse_genomes_project 5 123966670 124222249 + MGP_AJ_P0074624 Tmem132b protein_coding protein_coding MGP_AJ_T0074625.1 MGP_AJ_G0030081.1 mouse_genomes_project 5 124057715 124136054 + Tmem132b protein_coding retained_intron MGP_AJ_T0001895.1 MGP_AJ_G0001808.1 mouse_genomes_project 5 142347146 142349888 + TEC TEC MGP_AJ_T0075603.1 MGP_AJ_G0030267.1 mouse_genomes_project 5 139216252 139270232 - MGP_AJ_P0075603 Snx8 protein_coding protein_coding MGP_AJ_T0075604.1 MGP_AJ_G0030267.1 mouse_genomes_project 5 139216257 139240236 - MGP_AJ_P0075604 Snx8 protein_coding nonsense_mediated_decay MGP_AJ_T0075605.1 MGP_AJ_G0030267.1 mouse_genomes_project 5 139216261 139270253 - MGP_AJ_P0075605 Snx8 protein_coding protein_coding MGP_AJ_T0075606.1 MGP_AJ_G0030267.1 mouse_genomes_project 5 139231009 139231768 - Snx8 protein_coding retained_intron MGP_AJ_T0075607.1 MGP_AJ_G0030267.1 mouse_genomes_project 5 139231685 139247717 - MGP_AJ_P0075607 Snx8 protein_coding protein_coding MGP_AJ_T0075608.1 MGP_AJ_G0030267.1 mouse_genomes_project 5 139231701 139270232 - MGP_AJ_P0075608 Snx8 protein_coding protein_coding MGP_AJ_T0070530.1 MGP_AJ_G0029310.1 mouse_genomes_project 5 21411251 21418006 - MGP_AJ_P0070530 Fastk protein_coding protein_coding MGP_AJ_T0070531.1 MGP_AJ_G0029310.1 mouse_genomes_project 5 21411252 21417998 - Fastk protein_coding retained_intron MGP_AJ_T0070533.1 MGP_AJ_G0029310.1 mouse_genomes_project 5 21413850 21415027 - Fastk protein_coding retained_intron MGP_AJ_T0070534.1 MGP_AJ_G0029310.1 mouse_genomes_project 5 21413850 21418099 - MGP_AJ_P0070534 Fastk protein_coding protein_coding MGP_AJ_T0070535.1 MGP_AJ_G0029310.1 mouse_genomes_project 5 21413850 21418018 - MGP_AJ_P0070535 Fastk protein_coding nonsense_mediated_decay MGP_AJ_T0070536.1 MGP_AJ_G0029310.1 mouse_genomes_project 5 21413851 21417999 - Fastk protein_coding retained_intron MGP_AJ_T0070537.1 MGP_AJ_G0029310.1 mouse_genomes_project 5 21413851 21414336 - Fastk protein_coding retained_intron MGP_AJ_T0070538.1 MGP_AJ_G0029310.1 mouse_genomes_project 5 21413854 21418020 - MGP_AJ_P0070538 Fastk protein_coding protein_coding MGP_AJ_T0070539.1 MGP_AJ_G0029310.1 mouse_genomes_project 5 21414339 21414913 - Fastk protein_coding retained_intron MGP_AJ_T0070540.1 MGP_AJ_G0029310.1 mouse_genomes_project 5 21414431 21415110 - Fastk protein_coding processed_transcript MGP_AJ_T0070541.1 MGP_AJ_G0029310.1 mouse_genomes_project 5 21414735 21416770 - Fastk protein_coding retained_intron MGP_AJ_T0070542.1 MGP_AJ_G0029310.1 mouse_genomes_project 5 21414882 21418050 - Fastk protein_coding processed_transcript MGP_AJ_T0070543.1 MGP_AJ_G0029310.1 mouse_genomes_project 5 21416112 21418020 - Fastk protein_coding retained_intron MGP_AJ_T0070544.1 MGP_AJ_G0029310.1 mouse_genomes_project 5 21416180 21418009 - Fastk protein_coding processed_transcript MGP_AJ_T0070545.1 MGP_AJ_G0029310.1 mouse_genomes_project 5 21416742 21418009 - Fastk protein_coding processed_transcript MGP_AJ_T0004739.1 MGP_AJ_G0004098.1 mouse_genomes_project 5 95849001 95851853 - A730035I17Rik antisense antisense MGP_AJ_T0004740.1 MGP_AJ_G0004098.1 mouse_genomes_project 5 95849017 95851079 - A730035I17Rik antisense antisense MGP_AJ_T0004741.1 MGP_AJ_G0004098.1 mouse_genomes_project 5 95849904 95851651 - A730035I17Rik antisense antisense MGP_AJ_T0004742.1 MGP_AJ_G0004098.1 mouse_genomes_project 5 95850327 95851082 - A730035I17Rik antisense antisense MGP_AJ_T0004743.1 MGP_AJ_G0004098.1 mouse_genomes_project 5 95851164 95851853 - A730035I17Rik antisense pseudogene MGP_AJ_T0072981.1 MGP_AJ_G0029765.1 mouse_genomes_project 5 101293994 101317943 - MGP_AJ_P0072981 Slc10a6 protein_coding protein_coding MGP_AJ_T0001544.1 MGP_AJ_G0001462.1 mouse_genomes_project 5 41927316 41929833 - TEC TEC MGP_AJ_T0073845.1 MGP_AJ_G0029947.1 mouse_genomes_project 5 115281195 115305693 - MGP_AJ_P0073845 Suds3 protein_coding protein_coding MGP_AJ_T0073846.1 MGP_AJ_G0029947.1 mouse_genomes_project 5 115281200 115293983 - Suds3 protein_coding retained_intron MGP_AJ_T0073847.1 MGP_AJ_G0029947.1 mouse_genomes_project 5 115281952 115305808 - MGP_AJ_P0073847 Suds3 protein_coding protein_coding MGP_AJ_T0073848.1 MGP_AJ_G0029947.1 mouse_genomes_project 5 115284473 115288325 - Suds3 protein_coding retained_intron MGP_AJ_T0073849.1 MGP_AJ_G0029947.1 mouse_genomes_project 5 115294869 115303246 - Suds3 protein_coding retained_intron MGP_AJ_T0073850.1 MGP_AJ_G0029947.1 mouse_genomes_project 5 115294875 115299433 - Suds3 protein_coding retained_intron MGP_AJ_T0070629.1 MGP_AJ_G0029331.1 mouse_genomes_project 5 23819265 23853635 + Dpp6 protein_coding processed_transcript MGP_AJ_T0070630.1 MGP_AJ_G0029331.1 mouse_genomes_project 5 23819419 24741692 + MGP_AJ_P0070630 Dpp6 protein_coding protein_coding MGP_AJ_T0070631.1 MGP_AJ_G0029331.1 mouse_genomes_project 5 23819496 24452959 + Dpp6 protein_coding retained_intron MGP_AJ_T0070632.1 MGP_AJ_G0029331.1 mouse_genomes_project 5 23908645 24742736 + MGP_AJ_P0070632 Dpp6 protein_coding protein_coding MGP_AJ_T0070633.1 MGP_AJ_G0029331.1 mouse_genomes_project 5 24053250 24742732 + MGP_AJ_P0070633 Dpp6 protein_coding protein_coding MGP_AJ_T0070634.1 MGP_AJ_G0029331.1 mouse_genomes_project 5 24053444 24056182 + Dpp6 protein_coding retained_intron MGP_AJ_T0070635.1 MGP_AJ_G0029331.1 mouse_genomes_project 5 24269381 24742731 + MGP_AJ_P0070635 Dpp6 protein_coding protein_coding MGP_AJ_T0070636.1 MGP_AJ_G0029331.1 mouse_genomes_project 5 24269381 24397638 + MGP_AJ_P0070636 Dpp6 protein_coding nonsense_mediated_decay MGP_AJ_T0070637.1 MGP_AJ_G0029331.1 mouse_genomes_project 5 24542580 24712370 + Dpp6 protein_coding retained_intron MGP_AJ_T0098693.1 MGP_AJ_G0036677.1 mouse_genomes_project 5 73271007 73271130 - Gm24738 rRNA rRNA MGP_AJ_T0071143.1 MGP_AJ_G0029418.1 mouse_genomes_project 5 30811061 30832752 + MGP_AJ_P0071143 Tacc3 protein_coding protein_coding MGP_AJ_T0071144.1 MGP_AJ_G0029418.1 mouse_genomes_project 5 30811061 30825958 + MGP_AJ_P0071144 Tacc3 protein_coding protein_coding MGP_AJ_T0071145.1 MGP_AJ_G0029418.1 mouse_genomes_project 5 30811080 30818898 + MGP_AJ_P0071145 Tacc3 protein_coding protein_coding MGP_AJ_T0071146.1 MGP_AJ_G0029418.1 mouse_genomes_project 5 30811487 30818433 + MGP_AJ_P0071146 Tacc3 protein_coding protein_coding MGP_AJ_T0071147.1 MGP_AJ_G0029418.1 mouse_genomes_project 5 30811519 30825955 + MGP_AJ_P0071147 Tacc3 protein_coding protein_coding MGP_AJ_T0071148.1 MGP_AJ_G0029418.1 mouse_genomes_project 5 30811567 30816345 + Tacc3 protein_coding retained_intron MGP_AJ_T0071149.1 MGP_AJ_G0029418.1 mouse_genomes_project 5 30822453 30825958 + MGP_AJ_P0071149 Tacc3 protein_coding protein_coding MGP_AJ_T0071150.1 MGP_AJ_G0029418.1 mouse_genomes_project 5 30822516 30832742 + MGP_AJ_P0071150 Tacc3 protein_coding protein_coding MGP_AJ_T0010662.1 MGP_AJ_G0008784.1 mouse_genomes_project 5 10751094 10751199 - Gm24054 miRNA miRNA MGP_AJ_T0076072.1 MGP_AJ_G0030372.1 mouse_genomes_project 5 148250653 148253421 - MGP_AJ_P0076072 Hmgb1 protein_coding protein_coding MGP_AJ_T0076073.1 MGP_AJ_G0030372.1 mouse_genomes_project 5 148250653 148389807 - MGP_AJ_P0076073 Hmgb1 protein_coding protein_coding MGP_AJ_T0076074.1 MGP_AJ_G0030372.1 mouse_genomes_project 5 148250970 148252265 - Hmgb1 protein_coding retained_intron MGP_AJ_T0076075.1 MGP_AJ_G0030372.1 mouse_genomes_project 5 148251218 148254654 - MGP_AJ_P0076075 Hmgb1 protein_coding protein_coding MGP_AJ_T0076076.1 MGP_AJ_G0030372.1 mouse_genomes_project 5 148251641 148254018 - MGP_AJ_P0076076 Hmgb1 protein_coding protein_coding MGP_AJ_T0076077.1 MGP_AJ_G0030372.1 mouse_genomes_project 5 148251885 148254659 - Hmgb1 protein_coding retained_intron MGP_AJ_T0076078.1 MGP_AJ_G0030372.1 mouse_genomes_project 5 148252132 148255158 - MGP_AJ_P0076078 Hmgb1 protein_coding protein_coding MGP_AJ_T0076079.1 MGP_AJ_G0030372.1 mouse_genomes_project 5 148252190 148254624 - Hmgb1 protein_coding retained_intron MGP_AJ_T0014880.1 MGP_AJ_G0012975.1 mouse_genomes_project 5 18054409 18054783 - processed_pseudogene processed_pseudogene MGP_AJ_T0004890.1 MGP_AJ_G0004201.1 mouse_genomes_project 5 148625153 148626862 - Gm43151 antisense antisense MGP_AJ_T0001559.1 MGP_AJ_G0001477.1 mouse_genomes_project 5 45713275 45715856 - TEC TEC MGP_AJ_T0098703.1 MGP_AJ_G0036687.1 mouse_genomes_project 5 148492203 148492309 - n-R5s180 rRNA rRNA MGP_AJ_T0074054.1 MGP_AJ_G0029993.1 mouse_genomes_project 5 119793699 119868089 + MGP_AJ_P0074054 Tmem116 protein_coding protein_coding MGP_AJ_T0074055.1 MGP_AJ_G0029993.1 mouse_genomes_project 5 119794381 119836068 + MGP_AJ_P0074055 Tmem116 protein_coding nonsense_mediated_decay MGP_AJ_T0074056.1 MGP_AJ_G0029993.1 mouse_genomes_project 5 119794381 119837028 + MGP_AJ_P0074056 Tmem116 protein_coding protein_coding MGP_AJ_T0074057.1 MGP_AJ_G0029993.1 mouse_genomes_project 5 119794431 119824121 + MGP_AJ_P0074057 Tmem116 protein_coding nonsense_mediated_decay MGP_AJ_T0074058.1 MGP_AJ_G0029993.1 mouse_genomes_project 5 119794512 119824121 + Tmem116 protein_coding processed_transcript MGP_AJ_T0074059.1 MGP_AJ_G0029993.1 mouse_genomes_project 5 119804699 119837035 + MGP_AJ_P0074059 Tmem116 protein_coding protein_coding MGP_AJ_T0074060.1 MGP_AJ_G0029993.1 mouse_genomes_project 5 119804699 119837008 + MGP_AJ_P0074060 Tmem116 protein_coding protein_coding MGP_AJ_T0074061.1 MGP_AJ_G0029993.1 mouse_genomes_project 5 119804770 119835900 + MGP_AJ_P0074061 Tmem116 protein_coding protein_coding MGP_AJ_T0075221.1 MGP_AJ_G0030189.1 mouse_genomes_project 5 135846504 135847541 + MGP_AJ_P0075221 Ufsp1 protein_coding protein_coding MGP_AJ_T0072071.1 MGP_AJ_G0029567.1 mouse_genomes_project 5 65197783 65234158 + MGP_AJ_P0072071 Gm5108 protein_coding protein_coding MGP_AJ_T0072072.1 MGP_AJ_G0029567.1 mouse_genomes_project 5 65197853 65234088 + Gm5108 protein_coding antisense MGP_AJ_T0072073.1 MGP_AJ_G0029567.1 mouse_genomes_project 5 65197853 65234093 + Gm5108 protein_coding antisense MGP_AJ_T0071583.1 MGP_AJ_G0029490.1 mouse_genomes_project 5 40912384 40949911 - MGP_AJ_P0071583 Fbxl5 protein_coding protein_coding MGP_AJ_T0071584.1 MGP_AJ_G0029490.1 mouse_genomes_project 5 40912385 40949918 - MGP_AJ_P0071584 Fbxl5 protein_coding protein_coding MGP_AJ_T0071585.1 MGP_AJ_G0029490.1 mouse_genomes_project 5 40912385 40941369 - MGP_AJ_P0071585 Fbxl5 protein_coding protein_coding MGP_AJ_T0071586.1 MGP_AJ_G0029490.1 mouse_genomes_project 5 40912385 40949877 - MGP_AJ_P0071586 Fbxl5 protein_coding protein_coding MGP_AJ_T0071587.1 MGP_AJ_G0029490.1 mouse_genomes_project 5 40912393 40990742 - MGP_AJ_P0071587 Fbxl5 protein_coding protein_coding MGP_AJ_T0071588.1 MGP_AJ_G0029490.1 mouse_genomes_project 5 40918375 40949870 - MGP_AJ_P0071588 Fbxl5 protein_coding protein_coding MGP_AJ_T0071589.1 MGP_AJ_G0029490.1 mouse_genomes_project 5 40923672 40949889 - MGP_AJ_P0071589 Fbxl5 protein_coding protein_coding MGP_AJ_T0071590.1 MGP_AJ_G0029490.1 mouse_genomes_project 5 40925652 40949905 - MGP_AJ_P0071590 Fbxl5 protein_coding protein_coding MGP_AJ_T0071591.1 MGP_AJ_G0029490.1 mouse_genomes_project 5 40926457 40927652 - Fbxl5 protein_coding retained_intron MGP_AJ_T0071592.1 MGP_AJ_G0029490.1 mouse_genomes_project 5 40928799 40949870 - Fbxl5 protein_coding retained_intron MGP_AJ_T0071593.1 MGP_AJ_G0029490.1 mouse_genomes_project 5 40930079 40949886 - Fbxl5 protein_coding retained_intron MGP_AJ_T0071594.1 MGP_AJ_G0029490.1 mouse_genomes_project 5 40935877 40949868 - MGP_AJ_P0071594 Fbxl5 protein_coding protein_coding MGP_AJ_T0008246.1 MGP_AJ_G0006717.1 mouse_genomes_project 5 99783112 99784677 + Gm29707 lincRNA lincRNA MGP_AJ_T0008247.1 MGP_AJ_G0006717.1 mouse_genomes_project 5 99783744 99784235 + Gm29707 lincRNA lincRNA MGP_AJ_T0070763.1 MGP_AJ_G0029360.1 mouse_genomes_project 5 27683976 27692030 + MGP_AJ_P0070763 Cenpa protein_coding protein_coding MGP_AJ_T0070764.1 MGP_AJ_G0029360.1 mouse_genomes_project 5 27684096 27691578 + MGP_AJ_P0070764 Cenpa protein_coding nonsense_mediated_decay MGP_AJ_T0070765.1 MGP_AJ_G0029360.1 mouse_genomes_project 5 27684111 27691515 + MGP_AJ_P0070765 Cenpa protein_coding nonsense_mediated_decay MGP_AJ_T0070766.1 MGP_AJ_G0029360.1 mouse_genomes_project 5 27684134 27691609 + Cenpa protein_coding retained_intron MGP_AJ_T0070767.1 MGP_AJ_G0029360.1 mouse_genomes_project 5 27684142 27686959 + MGP_AJ_P0070767 Cenpa protein_coding protein_coding MGP_AJ_T0070768.1 MGP_AJ_G0029360.1 mouse_genomes_project 5 27684156 27691264 + MGP_AJ_P0070768 Cenpa protein_coding protein_coding MGP_AJ_T0070769.1 MGP_AJ_G0029360.1 mouse_genomes_project 5 27684159 27687965 + Cenpa protein_coding retained_intron MGP_AJ_T0070770.1 MGP_AJ_G0029360.1 mouse_genomes_project 5 27684173 27691609 + MGP_AJ_P0070770 Cenpa protein_coding nonsense_mediated_decay MGP_AJ_T0070771.1 MGP_AJ_G0029360.1 mouse_genomes_project 5 27684176 27691608 + MGP_AJ_P0070771 Cenpa protein_coding unknown_likely_coding MGP_AJ_T0070772.1 MGP_AJ_G0029360.1 mouse_genomes_project 5 27684197 27691586 + MGP_AJ_P0070772 Cenpa protein_coding nonsense_mediated_decay MGP_AJ_T0070773.1 MGP_AJ_G0029360.1 mouse_genomes_project 5 27689154 27691402 + Cenpa protein_coding retained_intron MGP_AJ_T0073390.1 MGP_AJ_G0029859.1 mouse_genomes_project 5 108875209 108900781 - MGP_AJ_P0073390 Ulk1 protein_coding protein_coding MGP_AJ_T0073391.1 MGP_AJ_G0029859.1 mouse_genomes_project 5 108876715 108878661 - MGP_AJ_P0073391 Ulk1 protein_coding nonsense_mediated_decay MGP_AJ_T0073392.1 MGP_AJ_G0029859.1 mouse_genomes_project 5 108876737 108879769 - MGP_AJ_P0073392 Ulk1 protein_coding nonsense_mediated_decay MGP_AJ_T0073393.1 MGP_AJ_G0029859.1 mouse_genomes_project 5 108876754 108877937 - Ulk1 protein_coding retained_intron MGP_AJ_T0073394.1 MGP_AJ_G0029859.1 mouse_genomes_project 5 108876809 108900737 - MGP_AJ_P0073394 Ulk1 protein_coding protein_coding MGP_AJ_T0073395.1 MGP_AJ_G0029859.1 mouse_genomes_project 5 108878606 108879383 - Ulk1 protein_coding retained_intron MGP_AJ_T0073396.1 MGP_AJ_G0029859.1 mouse_genomes_project 5 108878972 108880182 - Ulk1 protein_coding retained_intron MGP_AJ_T0073397.1 MGP_AJ_G0029859.1 mouse_genomes_project 5 108882115 108882910 - Ulk1 protein_coding retained_intron MGP_AJ_T0073398.1 MGP_AJ_G0029859.1 mouse_genomes_project 5 108882390 108884124 - Ulk1 protein_coding retained_intron MGP_AJ_T0073399.1 MGP_AJ_G0029859.1 mouse_genomes_project 5 108883113 108886515 - Ulk1 protein_coding processed_transcript MGP_AJ_T0073400.1 MGP_AJ_G0029859.1 mouse_genomes_project 5 108884319 108886552 - Ulk1 protein_coding retained_intron MGP_AJ_T0008343.1 MGP_AJ_G0006778.1 mouse_genomes_project 5 117137432 117145219 + Gm43342 lincRNA lincRNA MGP_AJ_T0001582.1 MGP_AJ_G0001499.1 mouse_genomes_project 5 46689079 46692188 - TEC TEC MGP_AJ_T0015076.1 MGP_AJ_G0013171.1 mouse_genomes_project 5 95710179 95710489 + processed_pseudogene processed_pseudogene MGP_AJ_T0098845.1 MGP_AJ_G0036829.1 mouse_genomes_project 5 1779559 1779686 - Gm22897 scaRNA scaRNA MGP_AJ_T0099031.1 MGP_AJ_G0037008.1 mouse_genomes_project 5 791168 793057 + Gm43031 sense_intronic sense_intronic MGP_AJ_T0008287.1 MGP_AJ_G0006743.1 mouse_genomes_project 5 108751179 108752786 + Gm42595 lincRNA lincRNA MGP_AJ_T0008400.1 MGP_AJ_G0006814.1 mouse_genomes_project 5 126021995 126023355 + Gm42980 lincRNA lincRNA MGP_AJ_T0015097.1 MGP_AJ_G0013192.1 mouse_genomes_project 5 104077891 104078747 + processed_pseudogene processed_pseudogene MGP_AJ_T0101808.1 MGP_AJ_G0039716.1 mouse_genomes_project 5 19464391 19464790 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0101809.1 MGP_AJ_G0039716.1 mouse_genomes_project 5 19464413 19465315 - transcribed_processed_pseudogene processed_transcript MGP_AJ_T0008315.1 MGP_AJ_G0006758.1 mouse_genomes_project 5 110789093 110794322 + Gm42865 lincRNA lincRNA MGP_AJ_T0015026.1 MGP_AJ_G0013121.1 mouse_genomes_project 5 72304266 72305821 + processed_pseudogene processed_pseudogene MGP_AJ_T0001503.1 MGP_AJ_G0001421.1 mouse_genomes_project 5 29940448 29941486 - TEC TEC MGP_AJ_T0072541.1 MGP_AJ_G0029660.1 mouse_genomes_project 5 85166808 85187459 + MGP_AJ_P0072541 Prr27 protein_coding protein_coding MGP_AJ_T0072542.1 MGP_AJ_G0029660.1 mouse_genomes_project 5 85166808 85187459 + MGP_AJ_P0072542 Prr27 protein_coding protein_coding MGP_AJ_T0073462.1 MGP_AJ_G0029874.1 mouse_genomes_project 5 110523766 110683992 - MGP_AJ_P0073462 Sez6l protein_coding protein_coding MGP_AJ_T0073463.1 MGP_AJ_G0029874.1 mouse_genomes_project 5 110523771 110684099 - MGP_AJ_P0073463 Sez6l protein_coding protein_coding MGP_AJ_T0073464.1 MGP_AJ_G0029874.1 mouse_genomes_project 5 110523780 110684309 - MGP_AJ_P0073464 Sez6l protein_coding protein_coding MGP_AJ_T0073465.1 MGP_AJ_G0029874.1 mouse_genomes_project 5 110526433 110684301 - MGP_AJ_P0073465 Sez6l protein_coding protein_coding MGP_AJ_T0070413.1 MGP_AJ_G0029291.1 mouse_genomes_project 5 18827725 19294099 - MGP_AJ_P0070413 Reln protein_coding protein_coding MGP_AJ_T0070414.1 MGP_AJ_G0029291.1 mouse_genomes_project 5 18828166 18839227 - Reln protein_coding processed_transcript MGP_AJ_T0070415.1 MGP_AJ_G0029291.1 mouse_genomes_project 5 18828521 19294087 - MGP_AJ_P0070415 Reln protein_coding protein_coding MGP_AJ_T0070416.1 MGP_AJ_G0029291.1 mouse_genomes_project 5 18833700 18837053 - Reln protein_coding retained_intron MGP_AJ_T0070417.1 MGP_AJ_G0029291.1 mouse_genomes_project 5 18838061 18842205 - Reln protein_coding processed_transcript MGP_AJ_T0070418.1 MGP_AJ_G0029291.1 mouse_genomes_project 5 18838791 18839147 - Reln protein_coding retained_intron MGP_AJ_T0070419.1 MGP_AJ_G0029291.1 mouse_genomes_project 5 18841882 18879086 - Reln protein_coding retained_intron MGP_AJ_T0070420.1 MGP_AJ_G0029291.1 mouse_genomes_project 5 18926528 18958982 - Reln protein_coding retained_intron MGP_AJ_T0070421.1 MGP_AJ_G0029291.1 mouse_genomes_project 5 18951757 19294087 - Reln protein_coding retained_intron MGP_AJ_T0070422.1 MGP_AJ_G0029291.1 mouse_genomes_project 5 18998743 18999973 - Reln protein_coding retained_intron MGP_AJ_T0070423.1 MGP_AJ_G0029291.1 mouse_genomes_project 5 19011522 19083483 - MGP_AJ_P0070423 Reln protein_coding nonsense_mediated_decay MGP_AJ_T0070424.1 MGP_AJ_G0029291.1 mouse_genomes_project 5 19076886 19294087 - Reln protein_coding retained_intron MGP_AJ_T0070425.1 MGP_AJ_G0029291.1 mouse_genomes_project 5 19119137 19294087 - Reln protein_coding retained_intron MGP_AJ_T0070426.1 MGP_AJ_G0029291.1 mouse_genomes_project 5 19163059 19294087 - Reln protein_coding retained_intron MGP_AJ_T0070427.1 MGP_AJ_G0029291.1 mouse_genomes_project 5 19291467 19294099 - Reln protein_coding processed_transcript MGP_AJ_T0008339.1 MGP_AJ_G0006775.1 mouse_genomes_project 5 115572731 115577094 + Gm15728 lincRNA lincRNA MGP_AJ_T0008340.1 MGP_AJ_G0006775.1 mouse_genomes_project 5 115572807 115574181 + Gm15728 lincRNA lincRNA MGP_AJ_T0015170.1 MGP_AJ_G0013265.1 mouse_genomes_project 5 136468268 136469020 + processed_pseudogene processed_pseudogene MGP_AJ_T0075943.1 MGP_AJ_G0030344.1 mouse_genomes_project 5 145275350 145290581 - MGP_AJ_P0075943 protein_coding protein_coding MGP_AJ_T0014873.1 MGP_AJ_G0012968.1 mouse_genomes_project 5 15281118 15281578 + processed_pseudogene processed_pseudogene MGP_AJ_T0070509.1 MGP_AJ_G0029307.1 mouse_genomes_project 5 21386143 21390586 + MGP_AJ_P0070509 Asic3 protein_coding protein_coding MGP_AJ_T0070510.1 MGP_AJ_G0029307.1 mouse_genomes_project 5 21386202 21390586 + Asic3 protein_coding retained_intron MGP_AJ_T0070511.1 MGP_AJ_G0029307.1 mouse_genomes_project 5 21386463 21390498 + MGP_AJ_P0070511 Asic3 protein_coding protein_coding MGP_AJ_T0070512.1 MGP_AJ_G0029307.1 mouse_genomes_project 5 21388491 21390586 + Asic3 protein_coding retained_intron MGP_AJ_T0070513.1 MGP_AJ_G0029307.1 mouse_genomes_project 5 21389328 21390587 + MGP_AJ_P0070513 Asic3 protein_coding nonsense_mediated_decay MGP_AJ_T0073283.1 MGP_AJ_G0029842.1 mouse_genomes_project 5 108177474 108181327 + MGP_AJ_P0073283 Plcxd1 protein_coding protein_coding MGP_AJ_T0073284.1 MGP_AJ_G0029842.1 mouse_genomes_project 5 108177927 108179391 + MGP_AJ_P0073284 Plcxd1 protein_coding protein_coding MGP_AJ_T0073285.1 MGP_AJ_G0029842.1 mouse_genomes_project 5 108178064 108183460 + MGP_AJ_P0073285 Plcxd1 protein_coding nonsense_mediated_decay MGP_AJ_T0073286.1 MGP_AJ_G0029842.1 mouse_genomes_project 5 108178715 108183465 + Plcxd1 protein_coding processed_transcript MGP_AJ_T0075239.1 MGP_AJ_G0030191.1 mouse_genomes_project 5 135861537 135866278 - MGP_AJ_P0075239 Trip6 protein_coding protein_coding MGP_AJ_T0075240.1 MGP_AJ_G0030191.1 mouse_genomes_project 5 135864826 135866065 - MGP_AJ_P0075240 Trip6 protein_coding protein_coding MGP_AJ_T0075241.1 MGP_AJ_G0030191.1 mouse_genomes_project 5 135864853 135866036 - Trip6 protein_coding retained_intron MGP_AJ_T0075242.1 MGP_AJ_G0030191.1 mouse_genomes_project 5 135865232 135866082 - Trip6 protein_coding processed_transcript MGP_AJ_T0018215.1 MGP_AJ_G0015598.1 mouse_genomes_project 5 150610117 150625455 + processed_transcript retained_intron MGP_AJ_T0018216.1 MGP_AJ_G0015598.1 mouse_genomes_project 5 150610151 150640914 + processed_transcript lincRNA MGP_AJ_T0018217.1 MGP_AJ_G0015598.1 mouse_genomes_project 5 150610160 150658669 + processed_transcript lincRNA MGP_AJ_T0018218.1 MGP_AJ_G0015598.1 mouse_genomes_project 5 150644893 150658462 + processed_transcript lincRNA MGP_AJ_T0018219.1 MGP_AJ_G0015598.1 mouse_genomes_project 5 150651251 150678150 + processed_transcript lincRNA MGP_AJ_T0018220.1 MGP_AJ_G0015598.1 mouse_genomes_project 5 150651273 150676545 + processed_transcript lincRNA MGP_AJ_T0100002.1 MGP_AJ_G0037968.1 mouse_genomes_project 5 33831226 33831330 - Gm24878 snRNA snRNA MGP_AJ_T0015147.1 MGP_AJ_G0013242.1 mouse_genomes_project 5 120847673 120847993 - processed_pseudogene processed_pseudogene MGP_AJ_T0001541.1 MGP_AJ_G0001459.1 mouse_genomes_project 5 41841165 41843172 - TEC TEC MGP_AJ_T0004791.1 MGP_AJ_G0004133.1 mouse_genomes_project 5 114427212 114438405 + Gm14507 antisense antisense MGP_AJ_T0070645.1 MGP_AJ_G0029333.1 mouse_genomes_project 5 24859721 24873488 + MGP_AJ_P0070645 Htr5a protein_coding protein_coding MGP_AJ_T0073527.1 MGP_AJ_G0029888.1 mouse_genomes_project 5 111889665 111898953 + MGP_AJ_P0073527 Iscu protein_coding protein_coding MGP_AJ_T0073528.1 MGP_AJ_G0029888.1 mouse_genomes_project 5 111889665 111898574 + MGP_AJ_P0073528 Iscu protein_coding protein_coding MGP_AJ_T0073529.1 MGP_AJ_G0029888.1 mouse_genomes_project 5 111889680 111897815 + MGP_AJ_P0073529 Iscu protein_coding nonsense_mediated_decay MGP_AJ_T0073530.1 MGP_AJ_G0029888.1 mouse_genomes_project 5 111889867 111898790 + MGP_AJ_P0073530 Iscu protein_coding protein_coding MGP_AJ_T0073531.1 MGP_AJ_G0029888.1 mouse_genomes_project 5 111889887 111898721 + MGP_AJ_P0073531 Iscu protein_coding nonsense_mediated_decay MGP_AJ_T0073532.1 MGP_AJ_G0029888.1 mouse_genomes_project 5 111890709 111898617 + MGP_AJ_P0073532 Iscu protein_coding protein_coding MGP_AJ_T0001834.1 MGP_AJ_G0001748.1 mouse_genomes_project 5 126973112 126974588 + TEC TEC MGP_AJ_T0074011.1 MGP_AJ_G0029986.1 mouse_genomes_project 5 119272306 119342806 - MGP_AJ_P0074011 Rph3a protein_coding protein_coding MGP_AJ_T0074012.1 MGP_AJ_G0029986.1 mouse_genomes_project 5 119272306 119342264 - MGP_AJ_P0074012 Rph3a protein_coding protein_coding MGP_AJ_T0074013.1 MGP_AJ_G0029986.1 mouse_genomes_project 5 119273654 119341269 - MGP_AJ_P0074013 Rph3a protein_coding protein_coding MGP_AJ_T0074014.1 MGP_AJ_G0029986.1 mouse_genomes_project 5 119305181 119342818 - MGP_AJ_P0074014 Rph3a protein_coding protein_coding MGP_AJ_T0008203.1 MGP_AJ_G0006682.1 mouse_genomes_project 5 83992046 84083202 + Gm43055 lincRNA lincRNA MGP_AJ_T0008251.1 MGP_AJ_G0006721.1 mouse_genomes_project 5 101930714 101937970 - Gm42792 lincRNA lincRNA MGP_AJ_T0102651.1 MGP_AJ_G0040393.1 mouse_genomes_project 5 141472060 141472571 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0071465.1 MGP_AJ_G0029466.1 mouse_genomes_project 5 34490856 34529272 - MGP_AJ_P0071465 Evc protein_coding protein_coding MGP_AJ_T0071466.1 MGP_AJ_G0029466.1 mouse_genomes_project 5 34491413 34498938 - MGP_AJ_P0071466 Evc protein_coding protein_coding MGP_AJ_T0071467.1 MGP_AJ_G0029466.1 mouse_genomes_project 5 34492130 34504071 - Evc protein_coding retained_intron MGP_AJ_T0071468.1 MGP_AJ_G0029466.1 mouse_genomes_project 5 34492175 34493305 - MGP_AJ_P0071468 Evc protein_coding protein_coding MGP_AJ_T0071469.1 MGP_AJ_G0029466.1 mouse_genomes_project 5 34504975 34529345 - MGP_AJ_P0071469 Evc protein_coding protein_coding MGP_AJ_T0071470.1 MGP_AJ_G0029466.1 mouse_genomes_project 5 34506225 34510026 - Evc protein_coding retained_intron MGP_AJ_T0071471.1 MGP_AJ_G0029466.1 mouse_genomes_project 5 34507861 34510145 - Evc protein_coding retained_intron MGP_AJ_T0071472.1 MGP_AJ_G0029466.1 mouse_genomes_project 5 34510838 34529357 - Evc protein_coding retained_intron MGP_AJ_T0075198.1 MGP_AJ_G0030183.1 mouse_genomes_project 5 135608091 135619194 - MGP_AJ_P0075198 Ap1s1 protein_coding protein_coding MGP_AJ_T0075199.1 MGP_AJ_G0030183.1 mouse_genomes_project 5 135608440 135610750 - Ap1s1 protein_coding retained_intron MGP_AJ_T0075200.1 MGP_AJ_G0030183.1 mouse_genomes_project 5 135610478 135618854 - MGP_AJ_P0075200 Ap1s1 protein_coding protein_coding MGP_AJ_T0075201.1 MGP_AJ_G0030183.1 mouse_genomes_project 5 135610495 135619101 - MGP_AJ_P0075201 Ap1s1 protein_coding protein_coding MGP_AJ_T0075202.1 MGP_AJ_G0030183.1 mouse_genomes_project 5 135616126 135618466 - MGP_AJ_P0075202 Ap1s1 protein_coding protein_coding MGP_AJ_T0001473.1 MGP_AJ_G0001394.1 mouse_genomes_project 5 19795823 19800557 - TEC TEC MGP_AJ_T0010656.1 MGP_AJ_G0008778.1 mouse_genomes_project 5 348460 348577 + Gm26238 miRNA miRNA MGP_AJ_T0008168.1 MGP_AJ_G0006655.1 mouse_genomes_project 5 69714612 69715517 - AU023070 lincRNA lincRNA MGP_AJ_T0100047.1 MGP_AJ_G0038013.1 mouse_genomes_project 5 112053011 112053092 - Gm22056 snRNA snRNA MGP_AJ_T0001525.1 MGP_AJ_G0001443.1 mouse_genomes_project 5 40698638 40702906 + TEC TEC MGP_AJ_T0075048.1 MGP_AJ_G0030157.1 mouse_genomes_project 5 134303756 134333895 - MGP_AJ_P0075048 Styxl1 protein_coding protein_coding MGP_AJ_T0075049.1 MGP_AJ_G0030157.1 mouse_genomes_project 5 134303786 134325961 - MGP_AJ_P0075049 Styxl1 protein_coding protein_coding MGP_AJ_T0075050.1 MGP_AJ_G0030157.1 mouse_genomes_project 5 134312657 134333973 - MGP_AJ_P0075050 Styxl1 protein_coding protein_coding MGP_AJ_T0008047.1 MGP_AJ_G0006569.1 mouse_genomes_project 5 6119162 6120963 - Gm15734 lincRNA lincRNA MGP_AJ_T0001727.1 MGP_AJ_G0001642.1 mouse_genomes_project 5 95661720 95663292 - TEC TEC MGP_AJ_T0102654.1 MGP_AJ_G0040396.1 mouse_genomes_project 5 144397624 144684433 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0014995.1 MGP_AJ_G0013090.1 mouse_genomes_project 5 57345782 57346416 - processed_pseudogene processed_pseudogene MGP_AJ_T0001648.1 MGP_AJ_G0001564.1 mouse_genomes_project 5 63203467 63205049 + TEC TEC MGP_AJ_T0075954.1 MGP_AJ_G0030348.1 mouse_genomes_project 5 145380671 145446257 + MGP_AJ_P0075954 protein_coding protein_coding MGP_AJ_T0075955.1 MGP_AJ_G0030348.1 mouse_genomes_project 5 145380768 145423353 + MGP_AJ_P0075955 protein_coding protein_coding MGP_AJ_T0075956.1 MGP_AJ_G0030348.1 mouse_genomes_project 5 145407980 145410175 + protein_coding retained_intron MGP_AJ_T0075957.1 MGP_AJ_G0030348.1 mouse_genomes_project 5 145439412 145456347 + MGP_AJ_P0075957 protein_coding unknown_likely_coding MGP_AJ_T0075958.1 MGP_AJ_G0030348.1 mouse_genomes_project 5 145441889 145445681 + protein_coding processed_transcript MGP_AJ_T0075959.1 MGP_AJ_G0030348.1 mouse_genomes_project 5 145449877 145453025 + protein_coding retained_intron MGP_AJ_T0074692.1 MGP_AJ_G0030095.1 mouse_genomes_project 5 128172734 128182579 - Sept14 protein_coding processed_transcript MGP_AJ_T0074693.1 MGP_AJ_G0030095.1 mouse_genomes_project 5 128172745 128194458 - MGP_AJ_P0074693 Sept14 protein_coding protein_coding MGP_AJ_T0074694.1 MGP_AJ_G0030095.1 mouse_genomes_project 5 128172782 128197219 - MGP_AJ_P0074694 Sept14 protein_coding protein_coding MGP_AJ_T0070711.1 MGP_AJ_G0029349.1 mouse_genomes_project 5 27149795 27163053 + MGP_AJ_P0070711 Gareml protein_coding protein_coding MGP_AJ_T0008399.1 MGP_AJ_G0006813.1 mouse_genomes_project 5 125648024 125648430 - Gm43476 lincRNA lincRNA MGP_AJ_T0070557.1 MGP_AJ_G0029313.1 mouse_genomes_project 5 21476334 21500345 - MGP_AJ_P0070557 Gbx1 protein_coding protein_coding MGP_AJ_T0070042.1 MGP_AJ_G0029223.1 mouse_genomes_project 5 279862 292460 - MGP_AJ_P0070042 Rbm48 protein_coding protein_coding MGP_AJ_T0070043.1 MGP_AJ_G0029223.1 mouse_genomes_project 5 280660 291934 - MGP_AJ_P0070043 Rbm48 protein_coding nonsense_mediated_decay MGP_AJ_T0070044.1 MGP_AJ_G0029223.1 mouse_genomes_project 5 286652 288016 - Rbm48 protein_coding retained_intron MGP_AJ_T0070045.1 MGP_AJ_G0029223.1 mouse_genomes_project 5 287356 291957 - Rbm48 protein_coding retained_intron MGP_AJ_T0070046.1 MGP_AJ_G0029223.1 mouse_genomes_project 5 288130 292077 - MGP_AJ_P0070046 Rbm48 protein_coding protein_coding MGP_AJ_T0001640.1 MGP_AJ_G0001556.1 mouse_genomes_project 5 62895397 62896949 - TEC TEC MGP_AJ_T0070591.1 MGP_AJ_G0029322.1 mouse_genomes_project 5 21775078 21815219 - MGP_AJ_P0070591 Rheb protein_coding protein_coding MGP_AJ_T0070592.1 MGP_AJ_G0029322.1 mouse_genomes_project 5 21775922 21786207 - Rheb protein_coding retained_intron MGP_AJ_T0070593.1 MGP_AJ_G0029322.1 mouse_genomes_project 5 21782382 21815023 - Rheb protein_coding retained_intron MGP_AJ_T0070594.1 MGP_AJ_G0029322.1 mouse_genomes_project 5 21812598 21815204 - Rheb protein_coding retained_intron MGP_AJ_T0008447.1 MGP_AJ_G0006848.1 mouse_genomes_project 5 145351962 145353501 - Gm43625 lincRNA lincRNA MGP_AJ_T0000002.1 MGP_AJ_G0000002.1 mouse_genomes_project 5 17644031 17647807 + Gm29254 3prime_overlapping_ncRNA 3prime_overlapping_ncRNA MGP_AJ_T0000003.1 MGP_AJ_G0000002.1 mouse_genomes_project 5 17644031 17647804 + Gm29254 3prime_overlapping_ncRNA 3prime_overlapping_ncRNA MGP_AJ_T0010728.1 MGP_AJ_G0008850.1 mouse_genomes_project 5 136779893 136779981 - Mir93 miRNA miRNA MGP_AJ_T0071752.1 MGP_AJ_G0029517.1 mouse_genomes_project 5 49970283 50018626 + Zcchc4 protein_coding processed_transcript MGP_AJ_T0071753.1 MGP_AJ_G0029517.1 mouse_genomes_project 5 49978008 50018369 + MGP_AJ_P0071753 Zcchc4 protein_coding protein_coding MGP_AJ_T0071754.1 MGP_AJ_G0029517.1 mouse_genomes_project 5 49978008 50019463 + MGP_AJ_P0071754 Zcchc4 protein_coding protein_coding MGP_AJ_T0071755.1 MGP_AJ_G0029517.1 mouse_genomes_project 5 49978040 49995166 + Zcchc4 protein_coding retained_intron MGP_AJ_T0071756.1 MGP_AJ_G0029517.1 mouse_genomes_project 5 49978070 49991097 + MGP_AJ_P0071756 Zcchc4 protein_coding protein_coding MGP_AJ_T0071757.1 MGP_AJ_G0029517.1 mouse_genomes_project 5 49978076 49991129 + Zcchc4 protein_coding processed_transcript MGP_AJ_T0071758.1 MGP_AJ_G0029517.1 mouse_genomes_project 5 49993027 50013982 + Zcchc4 protein_coding processed_transcript MGP_AJ_T0071759.1 MGP_AJ_G0029517.1 mouse_genomes_project 5 49999113 50010646 + Zcchc4 protein_coding retained_intron MGP_AJ_T0070962.1 MGP_AJ_G0029388.1 mouse_genomes_project 5 28284305 28323247 - MGP_AJ_P0070962 Ift172 protein_coding protein_coding MGP_AJ_T0070963.1 MGP_AJ_G0029388.1 mouse_genomes_project 5 28284308 28285682 - Ift172 protein_coding retained_intron MGP_AJ_T0070964.1 MGP_AJ_G0029388.1 mouse_genomes_project 5 28284581 28285839 - Ift172 protein_coding retained_intron MGP_AJ_T0070965.1 MGP_AJ_G0029388.1 mouse_genomes_project 5 28291717 28292483 - Ift172 protein_coding retained_intron MGP_AJ_T0070966.1 MGP_AJ_G0029388.1 mouse_genomes_project 5 28292591 28295160 - Ift172 protein_coding retained_intron MGP_AJ_T0070967.1 MGP_AJ_G0029388.1 mouse_genomes_project 5 28294068 28294868 - Ift172 protein_coding retained_intron MGP_AJ_T0070968.1 MGP_AJ_G0029388.1 mouse_genomes_project 5 28297575 28312384 - MGP_AJ_P0070968 Ift172 protein_coding protein_coding MGP_AJ_T0070969.1 MGP_AJ_G0029388.1 mouse_genomes_project 5 28303631 28313405 - MGP_AJ_P0070969 Ift172 protein_coding protein_coding MGP_AJ_T0070970.1 MGP_AJ_G0029388.1 mouse_genomes_project 5 28307472 28323179 - Ift172 protein_coding retained_intron MGP_AJ_T0070971.1 MGP_AJ_G0029388.1 mouse_genomes_project 5 28317429 28318542 - Ift172 protein_coding retained_intron MGP_AJ_T0070972.1 MGP_AJ_G0029388.1 mouse_genomes_project 5 28318069 28323256 - MGP_AJ_P0070972 Ift172 protein_coding protein_coding MGP_AJ_T0101276.1 MGP_AJ_G0039242.1 mouse_genomes_project 5 20816184 20816250 + Mir3096 snoRNA snoRNA MGP_AJ_T0071564.1 MGP_AJ_G0029484.1 mouse_genomes_project 5 38994406 38997425 - MGP_AJ_P0071564 Nkx3-2 protein_coding protein_coding MGP_AJ_T0004766.1 MGP_AJ_G0004114.1 mouse_genomes_project 5 108231363 108231999 - Gm43136 antisense antisense MGP_AJ_T0014859.1 MGP_AJ_G0012954.1 mouse_genomes_project 5 6967248 6968713 + processed_pseudogene processed_pseudogene MGP_AJ_T0010666.1 MGP_AJ_G0008788.1 mouse_genomes_project 5 27216229 27216307 + Mir1960 miRNA miRNA MGP_AJ_T0001516.1 MGP_AJ_G0001434.1 mouse_genomes_project 5 34355394 34358212 + TEC TEC MGP_AJ_T0070627.1 MGP_AJ_G0029330.1 mouse_genomes_project 5 22746059 22763706 + Actr3b protein_coding processed_transcript MGP_AJ_T0070628.1 MGP_AJ_G0029330.1 mouse_genomes_project 5 22746105 22835141 + MGP_AJ_P0070628 Actr3b protein_coding protein_coding MGP_AJ_T0010707.1 MGP_AJ_G0008829.1 mouse_genomes_project 5 116617628 116617720 - Gm26455 miRNA miRNA MGP_AJ_T0001627.1 MGP_AJ_G0001543.1 mouse_genomes_project 5 61678703 61679657 + TEC TEC MGP_AJ_T0001779.1 MGP_AJ_G0001694.1 mouse_genomes_project 5 114641867 114643229 - TEC TEC MGP_AJ_T0015016.1 MGP_AJ_G0013111.1 mouse_genomes_project 5 67155403 67155687 - processed_pseudogene processed_pseudogene MGP_AJ_T0072789.1 MGP_AJ_G0029727.1 mouse_genomes_project 5 90739036 90748000 + MGP_AJ_P0072789 Ccng2 protein_coding protein_coding MGP_AJ_T0072790.1 MGP_AJ_G0029727.1 mouse_genomes_project 5 90739368 90740234 + Ccng2 protein_coding processed_transcript MGP_AJ_T0072791.1 MGP_AJ_G0029727.1 mouse_genomes_project 5 90739380 90741496 + Ccng2 protein_coding processed_transcript MGP_AJ_T0072792.1 MGP_AJ_G0029727.1 mouse_genomes_project 5 90739418 90747994 + Ccng2 protein_coding retained_intron MGP_AJ_T0072793.1 MGP_AJ_G0029727.1 mouse_genomes_project 5 90740093 90747993 + MGP_AJ_P0072793 Ccng2 protein_coding protein_coding MGP_AJ_T0072794.1 MGP_AJ_G0029727.1 mouse_genomes_project 5 90740487 90745254 + Ccng2 protein_coding retained_intron MGP_AJ_T0071047.1 MGP_AJ_G0029399.1 mouse_genomes_project 5 29208051 29230090 + MGP_AJ_P0071047 Fosl2 protein_coding protein_coding MGP_AJ_T0071048.1 MGP_AJ_G0029399.1 mouse_genomes_project 5 29208423 29211898 + Fosl2 protein_coding retained_intron MGP_AJ_T0071049.1 MGP_AJ_G0029399.1 mouse_genomes_project 5 29218770 29225961 + Fosl2 protein_coding retained_intron MGP_AJ_T0008481.1 MGP_AJ_G0006873.1 mouse_genomes_project 5 149023936 149033681 - Gm21221 lincRNA lincRNA MGP_AJ_T0101314.1 MGP_AJ_G0039280.1 mouse_genomes_project 5 128282035 128282170 + Gm23245 snoRNA snoRNA MGP_AJ_T0072498.1 MGP_AJ_G0029654.1 mouse_genomes_project 5 84890228 84904611 - MGP_AJ_P0072498 Sult1d1 protein_coding protein_coding MGP_AJ_T0072499.1 MGP_AJ_G0029654.1 mouse_genomes_project 5 84891523 84895775 - Sult1d1 protein_coding processed_transcript MGP_AJ_T0008312.1 MGP_AJ_G0006756.1 mouse_genomes_project 5 110690036 110697274 - 1700034G24Rik lincRNA lincRNA MGP_AJ_T0008313.1 MGP_AJ_G0006756.1 mouse_genomes_project 5 110690125 110697274 - 1700034G24Rik lincRNA lincRNA MGP_AJ_T0008052.1 MGP_AJ_G0006574.1 mouse_genomes_project 5 12789684 12809891 - 4930519H02Rik lincRNA lincRNA MGP_AJ_T0008053.1 MGP_AJ_G0006574.1 mouse_genomes_project 5 12792804 12809954 - 4930519H02Rik lincRNA lincRNA MGP_AJ_T0075609.1 MGP_AJ_G0030268.1 mouse_genomes_project 5 139298903 139325582 + MGP_AJ_P0075609 Eif3b protein_coding protein_coding MGP_AJ_T0075610.1 MGP_AJ_G0030268.1 mouse_genomes_project 5 139306666 139310250 + Eif3b protein_coding retained_intron MGP_AJ_T0075611.1 MGP_AJ_G0030268.1 mouse_genomes_project 5 139322160 139324919 + MGP_AJ_P0075611 Eif3b protein_coding protein_coding MGP_AJ_T0070741.1 MGP_AJ_G0029354.1 mouse_genomes_project 5 27336075 27374671 + MGP_AJ_P0070741 Drc1 protein_coding protein_coding MGP_AJ_T0070742.1 MGP_AJ_G0029354.1 mouse_genomes_project 5 27348659 27349648 + Drc1 protein_coding processed_transcript MGP_AJ_T0070743.1 MGP_AJ_G0029354.1 mouse_genomes_project 5 27352793 27363352 + Drc1 protein_coding processed_transcript MGP_AJ_T0070744.1 MGP_AJ_G0029354.1 mouse_genomes_project 5 27361082 27363985 + Drc1 protein_coding processed_transcript MGP_AJ_T0004662.1 MGP_AJ_G0004034.1 mouse_genomes_project 5 29400390 29434371 - Gm36840 antisense antisense MGP_AJ_T0015005.1 MGP_AJ_G0013100.1 mouse_genomes_project 5 61389777 61390729 - processed_pseudogene processed_pseudogene MGP_AJ_T0010673.1 MGP_AJ_G0008795.1 mouse_genomes_project 5 33492225 33492284 + Mir7689 miRNA miRNA MGP_AJ_T0072074.1 MGP_AJ_G0029568.1 mouse_genomes_project 5 65288405 65417129 + MGP_AJ_P0072074 Grxcr1 protein_coding protein_coding MGP_AJ_T0001651.1 MGP_AJ_G0001567.1 mouse_genomes_project 5 63458245 63461195 + TEC TEC MGP_AJ_T0001887.1 MGP_AJ_G0001800.1 mouse_genomes_project 5 137563753 137564544 + TEC TEC MGP_AJ_T0073923.1 MGP_AJ_G0029962.1 mouse_genomes_project 5 117890158 117893153 + Tbx3 protein_coding retained_intron MGP_AJ_T0073924.1 MGP_AJ_G0029962.1 mouse_genomes_project 5 117890158 117904806 + MGP_AJ_P0073924 Tbx3 protein_coding protein_coding MGP_AJ_T0073925.1 MGP_AJ_G0029962.1 mouse_genomes_project 5 117890351 117904968 + MGP_AJ_P0073925 Tbx3 protein_coding protein_coding MGP_AJ_T0073926.1 MGP_AJ_G0029962.1 mouse_genomes_project 5 117890507 117904968 + MGP_AJ_P0073926 Tbx3 protein_coding protein_coding MGP_AJ_T0073927.1 MGP_AJ_G0029962.1 mouse_genomes_project 5 117894931 117900887 + Tbx3 protein_coding retained_intron MGP_AJ_T0073928.1 MGP_AJ_G0029962.1 mouse_genomes_project 5 117900505 117901089 + Tbx3 protein_coding processed_transcript MGP_AJ_T0004674.1 MGP_AJ_G0004046.1 mouse_genomes_project 5 34054601 34057886 - Ppp2r2cos antisense antisense MGP_AJ_T0075969.1 MGP_AJ_G0030352.1 mouse_genomes_project 5 145992909 145997074 + MGP_AJ_P0075969 Rpl21 protein_coding protein_coding MGP_AJ_T0075970.1 MGP_AJ_G0030352.1 mouse_genomes_project 5 145993165 145994625 + Rpl21 protein_coding retained_intron MGP_AJ_T0075971.1 MGP_AJ_G0030352.1 mouse_genomes_project 5 145993214 145996013 + MGP_AJ_P0075971 Rpl21 protein_coding protein_coding MGP_AJ_T0075972.1 MGP_AJ_G0030352.1 mouse_genomes_project 5 145993221 145996014 + MGP_AJ_P0075972 Rpl21 protein_coding protein_coding MGP_AJ_T0075973.1 MGP_AJ_G0030352.1 mouse_genomes_project 5 145994211 145994984 + Rpl21 protein_coding retained_intron MGP_AJ_T0075974.1 MGP_AJ_G0030352.1 mouse_genomes_project 5 145995225 145996014 + Rpl21 protein_coding retained_intron MGP_AJ_T0101281.1 MGP_AJ_G0039247.1 mouse_genomes_project 5 53909909 53910039 + Gm23896 snoRNA snoRNA MGP_AJ_T0076091.1 MGP_AJ_G0030375.1 mouse_genomes_project 5 148613584 148624795 + Medag protein_coding retained_intron MGP_AJ_T0076092.1 MGP_AJ_G0030375.1 mouse_genomes_project 5 148613790 148631678 + MGP_AJ_P0076092 Medag protein_coding protein_coding MGP_AJ_T0101818.1 MGP_AJ_G0039723.1 mouse_genomes_project 5 53595629 53666356 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0072999.1 MGP_AJ_G0029769.1 mouse_genomes_project 5 101642564 101665881 - MGP_AJ_P0072999 Hsd17b13 protein_coding protein_coding MGP_AJ_T0073000.1 MGP_AJ_G0029769.1 mouse_genomes_project 5 101650578 101665927 - MGP_AJ_P0073000 Hsd17b13 protein_coding protein_coding MGP_AJ_T0073001.1 MGP_AJ_G0029769.1 mouse_genomes_project 5 101650578 101665843 - MGP_AJ_P0073001 Hsd17b13 protein_coding protein_coding MGP_AJ_T0001475.1 MGP_AJ_G0001396.1 mouse_genomes_project 5 20755943 20756827 + TEC TEC MGP_AJ_T0008472.1 MGP_AJ_G0006870.1 mouse_genomes_project 5 148446190 148459067 - Gm29264 lincRNA lincRNA MGP_AJ_T0001832.1 MGP_AJ_G0001746.1 mouse_genomes_project 5 126685992 126687991 - TEC TEC MGP_AJ_T0001562.1 MGP_AJ_G0001480.1 mouse_genomes_project 5 45964418 45966685 - TEC TEC MGP_AJ_T0010714.1 MGP_AJ_G0008836.1 mouse_genomes_project 5 123912568 123912645 + Gm27551 miRNA miRNA MGP_AJ_T0014953.1 MGP_AJ_G0013048.1 mouse_genomes_project 5 37541100 37542057 + processed_pseudogene processed_pseudogene MGP_AJ_T0015115.1 MGP_AJ_G0013210.1 mouse_genomes_project 5 107181852 107183737 + processed_pseudogene processed_pseudogene MGP_AJ_T0072632.1 MGP_AJ_G0029690.1 mouse_genomes_project 5 88022220 88059941 + MGP_AJ_P0072632 5830473C10Rik protein_coding protein_coding MGP_AJ_T0072633.1 MGP_AJ_G0029690.1 mouse_genomes_project 5 88022330 88039719 + MGP_AJ_P0072633 5830473C10Rik protein_coding protein_coding MGP_AJ_T0001716.1 MGP_AJ_G0001631.1 mouse_genomes_project 5 89653363 89653921 - TEC TEC MGP_AJ_T0015008.1 MGP_AJ_G0013103.1 mouse_genomes_project 5 61530222 61530721 + processed_pseudogene processed_pseudogene MGP_AJ_T0070029.1 MGP_AJ_G0029221.1 mouse_genomes_project 5 239715 266123 + MGP_AJ_P0070029 Fam133b protein_coding protein_coding MGP_AJ_T0070030.1 MGP_AJ_G0029221.1 mouse_genomes_project 5 239718 256932 + Fam133b protein_coding retained_intron MGP_AJ_T0070031.1 MGP_AJ_G0029221.1 mouse_genomes_project 5 239720 265625 + MGP_AJ_P0070031 Fam133b protein_coding nonsense_mediated_decay MGP_AJ_T0070032.1 MGP_AJ_G0029221.1 mouse_genomes_project 5 239720 265625 + MGP_AJ_P0070032 Fam133b protein_coding protein_coding MGP_AJ_T0070033.1 MGP_AJ_G0029221.1 mouse_genomes_project 5 239726 265698 + Fam133b protein_coding retained_intron MGP_AJ_T0070034.1 MGP_AJ_G0029221.1 mouse_genomes_project 5 255547 260603 + Fam133b protein_coding retained_intron MGP_AJ_T0070035.1 MGP_AJ_G0029221.1 mouse_genomes_project 5 260918 261610 + Fam133b protein_coding retained_intron MGP_AJ_T0070036.1 MGP_AJ_G0029221.1 mouse_genomes_project 5 262721 264916 + Fam133b protein_coding retained_intron MGP_AJ_T0001545.1 MGP_AJ_G0001463.1 mouse_genomes_project 5 42700373 42702776 + TEC TEC MGP_AJ_T0100012.1 MGP_AJ_G0037978.1 mouse_genomes_project 5 63405935 63406042 - Gm22929 snRNA snRNA MGP_AJ_T0008082.1 MGP_AJ_G0006592.1 mouse_genomes_project 5 25036272 25087942 - Gm26608 lincRNA lincRNA MGP_AJ_T0008083.1 MGP_AJ_G0006592.1 mouse_genomes_project 5 25070702 25072210 - Gm26608 lincRNA lincRNA MGP_AJ_T0073796.1 MGP_AJ_G0029940.1 mouse_genomes_project 5 113826825 113909891 - MGP_AJ_P0073796 Ccdc64 protein_coding unknown_likely_coding MGP_AJ_T0073797.1 MGP_AJ_G0029940.1 mouse_genomes_project 5 113826832 113828452 - Ccdc64 protein_coding retained_intron MGP_AJ_T0073798.1 MGP_AJ_G0029940.1 mouse_genomes_project 5 113826832 113910022 - MGP_AJ_P0073798 Ccdc64 protein_coding protein_coding MGP_AJ_T0073799.1 MGP_AJ_G0029940.1 mouse_genomes_project 5 113826834 113831644 - MGP_AJ_P0073799 Ccdc64 protein_coding protein_coding MGP_AJ_T0073800.1 MGP_AJ_G0029940.1 mouse_genomes_project 5 113826837 113831639 - MGP_AJ_P0073800 Ccdc64 protein_coding protein_coding MGP_AJ_T0073801.1 MGP_AJ_G0029940.1 mouse_genomes_project 5 113827924 113831644 - MGP_AJ_P0073801 Ccdc64 protein_coding nonsense_mediated_decay MGP_AJ_T0073802.1 MGP_AJ_G0029940.1 mouse_genomes_project 5 113828004 113848781 - MGP_AJ_P0073802 Ccdc64 protein_coding protein_coding MGP_AJ_T0073803.1 MGP_AJ_G0029940.1 mouse_genomes_project 5 113838865 113848985 - Ccdc64 protein_coding retained_intron MGP_AJ_T0073804.1 MGP_AJ_G0029940.1 mouse_genomes_project 5 113845710 113894960 - Ccdc64 protein_coding processed_transcript MGP_AJ_T0073805.1 MGP_AJ_G0029940.1 mouse_genomes_project 5 113848639 113909768 - MGP_AJ_P0073805 Ccdc64 protein_coding protein_coding MGP_AJ_T0073806.1 MGP_AJ_G0029940.1 mouse_genomes_project 5 113902864 113909829 - Ccdc64 protein_coding retained_intron MGP_AJ_T0100033.1 MGP_AJ_G0037999.1 mouse_genomes_project 5 90477314 90477422 - Gm25521 snRNA snRNA MGP_AJ_T0001472.1 MGP_AJ_G0001393.1 mouse_genomes_project 5 18902477 18904374 - TEC TEC MGP_AJ_T0010665.1 MGP_AJ_G0008787.1 mouse_genomes_project 5 26347190 26347293 - Gm23801 miRNA miRNA MGP_AJ_T0008071.1 MGP_AJ_G0006585.1 mouse_genomes_project 5 21420719 21421301 + 2310074N15Rik lincRNA lincRNA MGP_AJ_T0101315.1 MGP_AJ_G0039281.1 mouse_genomes_project 5 128286812 128286943 + Snora15 snoRNA snoRNA MGP_AJ_T0074066.1 MGP_AJ_G0029997.1 mouse_genomes_project 5 119868943 119890485 - MGP_AJ_P0074066 Mapkapk5 protein_coding protein_coding MGP_AJ_T0074067.1 MGP_AJ_G0029997.1 mouse_genomes_project 5 119868953 119889780 - MGP_AJ_P0074067 Mapkapk5 protein_coding protein_coding MGP_AJ_T0074068.1 MGP_AJ_G0029997.1 mouse_genomes_project 5 119868957 119871225 - Mapkapk5 protein_coding retained_intron MGP_AJ_T0074069.1 MGP_AJ_G0029997.1 mouse_genomes_project 5 119868957 119869798 - Mapkapk5 protein_coding retained_intron MGP_AJ_T0074070.1 MGP_AJ_G0029997.1 mouse_genomes_project 5 119868957 119871158 - MGP_AJ_P0074070 Mapkapk5 protein_coding protein_coding MGP_AJ_T0074071.1 MGP_AJ_G0029997.1 mouse_genomes_project 5 119868961 119882202 - Mapkapk5 protein_coding processed_transcript MGP_AJ_T0074072.1 MGP_AJ_G0029997.1 mouse_genomes_project 5 119869050 119889780 - MGP_AJ_P0074072 Mapkapk5 protein_coding protein_coding MGP_AJ_T0074073.1 MGP_AJ_G0029997.1 mouse_genomes_project 5 119869050 119889780 - MGP_AJ_P0074073 Mapkapk5 protein_coding protein_coding MGP_AJ_T0074074.1 MGP_AJ_G0029997.1 mouse_genomes_project 5 119869723 119889780 - Mapkapk5 protein_coding processed_transcript MGP_AJ_T0074075.1 MGP_AJ_G0029997.1 mouse_genomes_project 5 119870519 119876088 - Mapkapk5 protein_coding retained_intron MGP_AJ_T0074076.1 MGP_AJ_G0029997.1 mouse_genomes_project 5 119877629 119880332 - MGP_AJ_P0074076 Mapkapk5 protein_coding nonsense_mediated_decay MGP_AJ_T0074077.1 MGP_AJ_G0029997.1 mouse_genomes_project 5 119877824 119889811 - MGP_AJ_P0074077 Mapkapk5 protein_coding protein_coding MGP_AJ_T0074078.1 MGP_AJ_G0029997.1 mouse_genomes_project 5 119878913 119881665 - Mapkapk5 protein_coding processed_transcript MGP_AJ_T0075710.1 MGP_AJ_G0030290.1 mouse_genomes_project 5 141929595 142050283 - MGP_AJ_P0075710 Rnf216 protein_coding protein_coding MGP_AJ_T0075711.1 MGP_AJ_G0030290.1 mouse_genomes_project 5 141930522 142050269 - MGP_AJ_P0075711 Rnf216 protein_coding protein_coding MGP_AJ_T0075712.1 MGP_AJ_G0030290.1 mouse_genomes_project 5 141931319 142035949 - MGP_AJ_P0075712 Rnf216 protein_coding nonsense_mediated_decay MGP_AJ_T0075713.1 MGP_AJ_G0030290.1 mouse_genomes_project 5 141931351 142035949 - MGP_AJ_P0075713 Rnf216 protein_coding nonsense_mediated_decay MGP_AJ_T0075714.1 MGP_AJ_G0030290.1 mouse_genomes_project 5 141950489 141951891 - Rnf216 protein_coding retained_intron MGP_AJ_T0075715.1 MGP_AJ_G0030290.1 mouse_genomes_project 5 142002778 142050269 - Rnf216 protein_coding retained_intron MGP_AJ_T0075716.1 MGP_AJ_G0030290.1 mouse_genomes_project 5 142018465 142025265 - Rnf216 protein_coding retained_intron MGP_AJ_T0075717.1 MGP_AJ_G0030290.1 mouse_genomes_project 5 142027710 142050269 - Rnf216 protein_coding processed_transcript MGP_AJ_T0075718.1 MGP_AJ_G0030290.1 mouse_genomes_project 5 142027899 142050271 - Rnf216 protein_coding processed_transcript MGP_AJ_T0074532.1 MGP_AJ_G0030063.1 mouse_genomes_project 5 122967163 123005518 - MGP_AJ_P0074532 Rilpl1 protein_coding protein_coding MGP_AJ_T0074533.1 MGP_AJ_G0030063.1 mouse_genomes_project 5 122967620 122977972 - MGP_AJ_P0074533 Rilpl1 protein_coding nonsense_mediated_decay MGP_AJ_T0074534.1 MGP_AJ_G0030063.1 mouse_genomes_project 5 122967735 122989356 - MGP_AJ_P0074534 Rilpl1 protein_coding protein_coding MGP_AJ_T0074535.1 MGP_AJ_G0030063.1 mouse_genomes_project 5 122967747 122989440 - MGP_AJ_P0074535 Rilpl1 protein_coding protein_coding MGP_AJ_T0070182.1 MGP_AJ_G0029245.1 mouse_genomes_project 5 4874878 5179160 - MGP_AJ_P0070182 Adam22 protein_coding protein_coding MGP_AJ_T0070183.1 MGP_AJ_G0029245.1 mouse_genomes_project 5 4874878 5179160 - MGP_AJ_P0070183 Adam22 protein_coding protein_coding MGP_AJ_T0070184.1 MGP_AJ_G0029245.1 mouse_genomes_project 5 4874878 5179160 - MGP_AJ_P0070184 Adam22 protein_coding protein_coding MGP_AJ_T0070185.1 MGP_AJ_G0029245.1 mouse_genomes_project 5 4874878 5179259 - MGP_AJ_P0070185 Adam22 protein_coding protein_coding MGP_AJ_T0070186.1 MGP_AJ_G0029245.1 mouse_genomes_project 5 4874878 5179259 - MGP_AJ_P0070186 Adam22 protein_coding protein_coding MGP_AJ_T0070187.1 MGP_AJ_G0029245.1 mouse_genomes_project 5 4880365 4917763 - MGP_AJ_P0070187 Adam22 protein_coding protein_coding MGP_AJ_T0070188.1 MGP_AJ_G0029245.1 mouse_genomes_project 5 4881277 4913273 - MGP_AJ_P0070188 Adam22 protein_coding nonsense_mediated_decay MGP_AJ_T0070189.1 MGP_AJ_G0029245.1 mouse_genomes_project 5 4881277 4913273 - MGP_AJ_P0070189 Adam22 protein_coding protein_coding MGP_AJ_T0070190.1 MGP_AJ_G0029245.1 mouse_genomes_project 5 4884755 4913273 - MGP_AJ_P0070190 Adam22 protein_coding protein_coding MGP_AJ_T0070191.1 MGP_AJ_G0029245.1 mouse_genomes_project 5 4884755 4913273 - MGP_AJ_P0070191 Adam22 protein_coding protein_coding MGP_AJ_T0070192.1 MGP_AJ_G0029245.1 mouse_genomes_project 5 4884755 4913273 - MGP_AJ_P0070192 Adam22 protein_coding protein_coding MGP_AJ_T0070193.1 MGP_AJ_G0029245.1 mouse_genomes_project 5 4884755 4913273 - MGP_AJ_P0070193 Adam22 protein_coding protein_coding MGP_AJ_T0070194.1 MGP_AJ_G0029245.1 mouse_genomes_project 5 4884755 4913273 - MGP_AJ_P0070194 Adam22 protein_coding protein_coding MGP_AJ_T0070195.1 MGP_AJ_G0029245.1 mouse_genomes_project 5 4884755 4913273 - MGP_AJ_P0070195 Adam22 protein_coding protein_coding MGP_AJ_T0070196.1 MGP_AJ_G0029245.1 mouse_genomes_project 5 4884755 4913273 - MGP_AJ_P0070196 Adam22 protein_coding protein_coding MGP_AJ_T0070197.1 MGP_AJ_G0029245.1 mouse_genomes_project 5 4884755 4913273 - MGP_AJ_P0070197 Adam22 protein_coding protein_coding MGP_AJ_T0070198.1 MGP_AJ_G0029245.1 mouse_genomes_project 5 4884755 4913273 - MGP_AJ_P0070198 Adam22 protein_coding protein_coding MGP_AJ_T0070199.1 MGP_AJ_G0029245.1 mouse_genomes_project 5 4890582 4892885 - Adam22 protein_coding retained_intron MGP_AJ_T0070200.1 MGP_AJ_G0029245.1 mouse_genomes_project 5 4894904 5179255 - MGP_AJ_P0070200 Adam22 protein_coding protein_coding MGP_AJ_T0070201.1 MGP_AJ_G0029245.1 mouse_genomes_project 5 4894967 4913273 - MGP_AJ_P0070201 Adam22 protein_coding protein_coding MGP_AJ_T0070202.1 MGP_AJ_G0029245.1 mouse_genomes_project 5 4942366 5179259 - MGP_AJ_P0070202 Adam22 protein_coding protein_coding MGP_AJ_T0070203.1 MGP_AJ_G0029245.1 mouse_genomes_project 5 5038661 5179312 - Adam22 protein_coding processed_transcript MGP_AJ_T0070204.1 MGP_AJ_G0029245.1 mouse_genomes_project 5 5178117 5179338 - Adam22 protein_coding retained_intron MGP_AJ_T0071927.1 MGP_AJ_G0029549.1 mouse_genomes_project 5 62763969 62821970 + MGP_AJ_P0071927 Ube2k protein_coding protein_coding MGP_AJ_T0071928.1 MGP_AJ_G0029549.1 mouse_genomes_project 5 62763991 62821164 + MGP_AJ_P0071928 Ube2k protein_coding protein_coding MGP_AJ_T0071929.1 MGP_AJ_G0029549.1 mouse_genomes_project 5 62763999 62821970 + MGP_AJ_P0071929 Ube2k protein_coding protein_coding MGP_AJ_T0071930.1 MGP_AJ_G0029549.1 mouse_genomes_project 5 62764042 62821360 + MGP_AJ_P0071930 Ube2k protein_coding nonsense_mediated_decay MGP_AJ_T0071931.1 MGP_AJ_G0029549.1 mouse_genomes_project 5 62764192 62822243 + MGP_AJ_P0071931 Ube2k protein_coding protein_coding MGP_AJ_T0071932.1 MGP_AJ_G0029549.1 mouse_genomes_project 5 62796066 62798733 + Ube2k protein_coding retained_intron MGP_AJ_T0071933.1 MGP_AJ_G0029549.1 mouse_genomes_project 5 62817810 62821360 + Ube2k protein_coding retained_intron MGP_AJ_T0011612.1 MGP_AJ_G0009734.1 mouse_genomes_project 5 122728907 122729171 + Gm23171 misc_RNA misc_RNA MGP_AJ_T0073437.1 MGP_AJ_G0029869.1 mouse_genomes_project 5 110430197 110441949 + MGP_AJ_P0073437 Tfip11 protein_coding protein_coding MGP_AJ_T0073438.1 MGP_AJ_G0029869.1 mouse_genomes_project 5 110430260 110435791 + MGP_AJ_P0073438 Tfip11 protein_coding protein_coding MGP_AJ_T0073439.1 MGP_AJ_G0029869.1 mouse_genomes_project 5 110430331 110432060 + MGP_AJ_P0073439 Tfip11 protein_coding protein_coding MGP_AJ_T0073440.1 MGP_AJ_G0029869.1 mouse_genomes_project 5 110439517 110441149 + Tfip11 protein_coding retained_intron MGP_AJ_T0101288.1 MGP_AJ_G0039254.1 mouse_genomes_project 5 61209905 61210037 - Gm25608 snoRNA snoRNA MGP_AJ_T0099051.1 MGP_AJ_G0037028.1 mouse_genomes_project 5 113689871 113690556 + Gm13840 sense_intronic sense_intronic MGP_AJ_T0075374.1 MGP_AJ_G0030219.1 mouse_genomes_project 5 136615164 136670890 + MGP_AJ_P0075374 protein_coding protein_coding MGP_AJ_T0075575.1 MGP_AJ_G0030259.1 mouse_genomes_project 5 138657652 138668801 + MGP_AJ_P0075575 Mafk protein_coding protein_coding MGP_AJ_T0075576.1 MGP_AJ_G0030259.1 mouse_genomes_project 5 138657673 138665648 + Mafk protein_coding processed_transcript MGP_AJ_T0075577.1 MGP_AJ_G0030259.1 mouse_genomes_project 5 138663645 138668479 + MGP_AJ_P0075577 Mafk protein_coding protein_coding MGP_AJ_T0075090.1 MGP_AJ_G0030166.1 mouse_genomes_project 5 134617614 134627439 + Upk3bl protein_coding processed_transcript MGP_AJ_T0075091.1 MGP_AJ_G0030166.1 mouse_genomes_project 5 134620313 134627439 + MGP_AJ_P0075091 Upk3bl protein_coding protein_coding MGP_AJ_T0075092.1 MGP_AJ_G0030166.1 mouse_genomes_project 5 134620389 134627434 + MGP_AJ_P0075092 Upk3bl protein_coding protein_coding MGP_AJ_T0075093.1 MGP_AJ_G0030166.1 mouse_genomes_project 5 134620389 134627441 + MGP_AJ_P0075093 Upk3bl protein_coding protein_coding MGP_AJ_T0075094.1 MGP_AJ_G0030166.1 mouse_genomes_project 5 134623174 134627425 + Upk3bl protein_coding processed_transcript MGP_AJ_T0075095.1 MGP_AJ_G0030166.1 mouse_genomes_project 5 134623247 134627427 + MGP_AJ_P0075095 Upk3bl protein_coding nonsense_mediated_decay MGP_AJ_T0001733.1 MGP_AJ_G0001648.1 mouse_genomes_project 5 98581927 98584277 + TEC TEC MGP_AJ_T0073340.1 MGP_AJ_G0029851.1 mouse_genomes_project 5 108421364 108424508 - MGP_AJ_P0073340 P2rx2 protein_coding protein_coding MGP_AJ_T0073341.1 MGP_AJ_G0029851.1 mouse_genomes_project 5 108421364 108424765 - MGP_AJ_P0073341 P2rx2 protein_coding protein_coding MGP_AJ_T0073342.1 MGP_AJ_G0029851.1 mouse_genomes_project 5 108421364 108424508 - MGP_AJ_P0073342 P2rx2 protein_coding protein_coding MGP_AJ_T0073343.1 MGP_AJ_G0029851.1 mouse_genomes_project 5 108421365 108424529 - MGP_AJ_P0073343 P2rx2 protein_coding protein_coding MGP_AJ_T0073344.1 MGP_AJ_G0029851.1 mouse_genomes_project 5 108421522 108424702 - P2rx2 protein_coding retained_intron MGP_AJ_T0073345.1 MGP_AJ_G0029851.1 mouse_genomes_project 5 108421522 108424702 - MGP_AJ_P0073345 P2rx2 protein_coding protein_coding MGP_AJ_T0015105.1 MGP_AJ_G0013200.1 mouse_genomes_project 5 105847096 105847323 + processed_pseudogene processed_pseudogene MGP_AJ_T0008293.1 MGP_AJ_G0006746.1 mouse_genomes_project 5 109683515 109684184 + Gm42489 lincRNA lincRNA MGP_AJ_T0070213.1 MGP_AJ_G0029247.1 mouse_genomes_project 5 5241865 5279530 + protein_coding retained_intron MGP_AJ_T0070214.1 MGP_AJ_G0029247.1 mouse_genomes_project 5 5273878 5305211 + MGP_AJ_P0070214 protein_coding unknown_likely_coding MGP_AJ_T0070215.1 MGP_AJ_G0029247.1 mouse_genomes_project 5 5275727 5294347 + MGP_AJ_P0070215 protein_coding protein_coding MGP_AJ_T0070216.1 MGP_AJ_G0029247.1 mouse_genomes_project 5 5281019 5281441 + protein_coding retained_intron MGP_AJ_T0070217.1 MGP_AJ_G0029247.1 mouse_genomes_project 5 5295677 5301828 + protein_coding retained_intron MGP_AJ_T0074430.1 MGP_AJ_G0030048.1 mouse_genomes_project 5 122396032 122407109 + MGP_AJ_P0074430 Gm43518 protein_coding protein_coding MGP_AJ_T0075350.1 MGP_AJ_G0030211.1 mouse_genomes_project 5 136354506 136355420 + MGP_AJ_P0075350 Ppp1r35 protein_coding protein_coding MGP_AJ_T0075351.1 MGP_AJ_G0030211.1 mouse_genomes_project 5 136354561 136355768 + MGP_AJ_P0075351 Ppp1r35 protein_coding protein_coding MGP_AJ_T0075352.1 MGP_AJ_G0030211.1 mouse_genomes_project 5 136355094 136355764 + MGP_AJ_P0075352 Ppp1r35 protein_coding protein_coding MGP_AJ_T0075353.1 MGP_AJ_G0030211.1 mouse_genomes_project 5 136355201 136355768 + Ppp1r35 protein_coding retained_intron MGP_AJ_T0070843.1 MGP_AJ_G0029372.1 mouse_genomes_project 5 28073583 28078137 + MGP_AJ_P0070843 Atraid protein_coding protein_coding MGP_AJ_T0070844.1 MGP_AJ_G0029372.1 mouse_genomes_project 5 28073592 28079906 + Atraid protein_coding retained_intron MGP_AJ_T0070845.1 MGP_AJ_G0029372.1 mouse_genomes_project 5 28073906 28079912 + MGP_AJ_P0070845 Atraid protein_coding protein_coding MGP_AJ_T0070846.1 MGP_AJ_G0029372.1 mouse_genomes_project 5 28073911 28079910 + MGP_AJ_P0070846 Atraid protein_coding protein_coding MGP_AJ_T0070847.1 MGP_AJ_G0029372.1 mouse_genomes_project 5 28073919 28079282 + MGP_AJ_P0070847 Atraid protein_coding protein_coding MGP_AJ_T0070848.1 MGP_AJ_G0029372.1 mouse_genomes_project 5 28073930 28079907 + MGP_AJ_P0070848 Atraid protein_coding nonsense_mediated_decay MGP_AJ_T0070849.1 MGP_AJ_G0029372.1 mouse_genomes_project 5 28073993 28079633 + MGP_AJ_P0070849 Atraid protein_coding protein_coding MGP_AJ_T0070850.1 MGP_AJ_G0029372.1 mouse_genomes_project 5 28079158 28079912 + Atraid protein_coding processed_transcript MGP_AJ_T0014974.1 MGP_AJ_G0013069.1 mouse_genomes_project 5 50105807 50106988 - processed_pseudogene processed_pseudogene MGP_AJ_T0004828.1 MGP_AJ_G0004158.1 mouse_genomes_project 5 122665842 122666763 + Pitpnm2os2 antisense antisense MGP_AJ_T0004829.1 MGP_AJ_G0004158.1 mouse_genomes_project 5 122665895 122671285 + Pitpnm2os2 antisense antisense MGP_AJ_T0004830.1 MGP_AJ_G0004158.1 mouse_genomes_project 5 122666577 122669046 + Pitpnm2os2 antisense antisense MGP_AJ_T0014854.1 MGP_AJ_G0012949.1 mouse_genomes_project 5 4857041 4857563 + processed_pseudogene processed_pseudogene MGP_AJ_T0014861.1 MGP_AJ_G0012956.1 mouse_genomes_project 5 7506947 7507416 - processed_pseudogene processed_pseudogene MGP_AJ_T0001855.1 MGP_AJ_G0001769.1 mouse_genomes_project 5 130386162 130386910 - TEC TEC MGP_AJ_T0073282.1 MGP_AJ_G0029841.1 mouse_genomes_project 5 108150273 108171664 - MGP_AJ_P0073282 unknown_likely_coding unknown_likely_coding MGP_AJ_T0010695.1 MGP_AJ_G0008817.1 mouse_genomes_project 5 98191581 98191657 - Gm23222 miRNA miRNA MGP_AJ_T0010658.1 MGP_AJ_G0008780.1 mouse_genomes_project 5 1597118 1597206 + Gm44483 miRNA miRNA MGP_AJ_T0070681.1 MGP_AJ_G0029342.1 mouse_genomes_project 5 26487627 26493192 - MGP_AJ_P0070681 Mnx1 protein_coding protein_coding MGP_AJ_T0070682.1 MGP_AJ_G0029342.1 mouse_genomes_project 5 26487854 26493192 - MGP_AJ_P0070682 Mnx1 protein_coding protein_coding MGP_AJ_T0010659.1 MGP_AJ_G0008781.1 mouse_genomes_project 5 1650545 1650655 - Gm25037 miRNA miRNA MGP_AJ_T0004627.1 MGP_AJ_G0004006.1 mouse_genomes_project 5 167413 175901 - Gm17590 antisense antisense MGP_AJ_T0004628.1 MGP_AJ_G0004006.1 mouse_genomes_project 5 167623 167731 - Gm17590 antisense antisense MGP_AJ_T0102660.1 MGP_AJ_G0040402.1 mouse_genomes_project 5 150747928 150784064 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0001587.1 MGP_AJ_G0001504.1 mouse_genomes_project 5 48649613 48651433 - TEC TEC MGP_AJ_T0101307.1 MGP_AJ_G0039273.1 mouse_genomes_project 5 105746922 105747016 + Snord21 snoRNA snoRNA MGP_AJ_T0102659.1 MGP_AJ_G0040401.1 mouse_genomes_project 5 150681763 150702848 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0071473.1 MGP_AJ_G0029467.1 mouse_genomes_project 5 34530970 34617411 + MGP_AJ_P0071473 Evc2 protein_coding protein_coding MGP_AJ_T0071474.1 MGP_AJ_G0029467.1 mouse_genomes_project 5 34531079 34580101 + Evc2 protein_coding retained_intron MGP_AJ_T0071475.1 MGP_AJ_G0029467.1 mouse_genomes_project 5 34582263 34584375 + Evc2 protein_coding processed_transcript MGP_AJ_T0071476.1 MGP_AJ_G0029467.1 mouse_genomes_project 5 34608234 34610290 + Evc2 protein_coding retained_intron MGP_AJ_T0014904.1 MGP_AJ_G0012999.1 mouse_genomes_project 5 21055356 21055841 + processed_pseudogene processed_pseudogene MGP_AJ_T0015052.1 MGP_AJ_G0013147.1 mouse_genomes_project 5 84672378 84673059 - processed_pseudogene processed_pseudogene MGP_AJ_T0001769.1 MGP_AJ_G0001684.1 mouse_genomes_project 5 112023763 112028257 - TEC TEC MGP_AJ_T0010668.1 MGP_AJ_G0008790.1 mouse_genomes_project 5 28741183 28741293 - Mir3473e miRNA miRNA MGP_AJ_T0001664.1 MGP_AJ_G0001580.1 mouse_genomes_project 5 64680868 64683279 + TEC TEC MGP_AJ_T0001823.1 MGP_AJ_G0001738.1 mouse_genomes_project 5 122898309 122900363 + TEC TEC MGP_AJ_T0001824.1 MGP_AJ_G0001738.1 mouse_genomes_project 5 122899318 122900492 + TEC TEC MGP_AJ_T0075785.1 MGP_AJ_G0030306.1 mouse_genomes_project 5 142764718 142802698 + MGP_AJ_P0075785 Eif2ak1 protein_coding protein_coding MGP_AJ_T0075786.1 MGP_AJ_G0030306.1 mouse_genomes_project 5 142764761 142778920 + Eif2ak1 protein_coding retained_intron MGP_AJ_T0075787.1 MGP_AJ_G0030306.1 mouse_genomes_project 5 142764877 142772714 + Eif2ak1 protein_coding retained_intron MGP_AJ_T0004767.1 MGP_AJ_G0004115.1 mouse_genomes_project 5 108307790 108308384 - Gm43137 antisense antisense MGP_AJ_T0071709.1 MGP_AJ_G0029508.1 mouse_genomes_project 5 45572588 45919793 - Kcnip4 protein_coding processed_transcript MGP_AJ_T0071710.1 MGP_AJ_G0029508.1 mouse_genomes_project 5 45572588 45777172 - MGP_AJ_P0071710 Kcnip4 protein_coding protein_coding MGP_AJ_T0071711.1 MGP_AJ_G0029508.1 mouse_genomes_project 5 45572588 46698333 - MGP_AJ_P0071711 Kcnip4 protein_coding protein_coding MGP_AJ_T0071712.1 MGP_AJ_G0029508.1 mouse_genomes_project 5 45572588 46052776 - MGP_AJ_P0071712 Kcnip4 protein_coding protein_coding MGP_AJ_T0071713.1 MGP_AJ_G0029508.1 mouse_genomes_project 5 45572589 45674558 - Kcnip4 protein_coding processed_transcript MGP_AJ_T0071714.1 MGP_AJ_G0029508.1 mouse_genomes_project 5 45572593 46698190 - MGP_AJ_P0071714 Kcnip4 protein_coding protein_coding MGP_AJ_T0071715.1 MGP_AJ_G0029508.1 mouse_genomes_project 5 45572598 46454681 - MGP_AJ_P0071715 Kcnip4 protein_coding protein_coding MGP_AJ_T0071718.1 MGP_AJ_G0029508.1 mouse_genomes_project 5 45579120 45919793 - Kcnip4 protein_coding processed_transcript MGP_AJ_T0100039.1 MGP_AJ_G0038005.1 mouse_genomes_project 5 101587139 101587246 + Gm24897 snRNA snRNA MGP_AJ_T0008359.1 MGP_AJ_G0006791.1 mouse_genomes_project 5 118894778 118895488 + Gm15749 lincRNA lincRNA MGP_AJ_T0075134.1 MGP_AJ_G0030173.1 mouse_genomes_project 5 134779391 134807077 - MGP_AJ_P0075134 Sh2b2 protein_coding protein_coding MGP_AJ_T0075135.1 MGP_AJ_G0030173.1 mouse_genomes_project 5 134779393 134807126 - MGP_AJ_P0075135 Sh2b2 protein_coding protein_coding MGP_AJ_T0075136.1 MGP_AJ_G0030173.1 mouse_genomes_project 5 134781611 134783907 - Sh2b2 protein_coding retained_intron MGP_AJ_T0075137.1 MGP_AJ_G0030173.1 mouse_genomes_project 5 134785013 134807060 - MGP_AJ_P0075137 Sh2b2 protein_coding protein_coding MGP_AJ_T0075138.1 MGP_AJ_G0030173.1 mouse_genomes_project 5 134793408 134808816 - MGP_AJ_P0075138 Sh2b2 protein_coding protein_coding MGP_AJ_T0008333.1 MGP_AJ_G0006770.1 mouse_genomes_project 5 114495712 114501613 + B230112J18Rik lincRNA lincRNA MGP_AJ_T0100061.1 MGP_AJ_G0038027.1 mouse_genomes_project 5 134661309 134661481 - Gm22214 snRNA snRNA MGP_AJ_T0073964.1 MGP_AJ_G0029971.1 mouse_genomes_project 5 118834711 118852685 + MGP_AJ_P0073964 Iqcd protein_coding protein_coding MGP_AJ_T0073965.1 MGP_AJ_G0029971.1 mouse_genomes_project 5 118834718 118852689 + MGP_AJ_P0073965 Iqcd protein_coding protein_coding MGP_AJ_T0008294.1 MGP_AJ_G0006747.1 mouse_genomes_project 5 109826211 109854541 - E130006D01Rik lincRNA lincRNA MGP_AJ_T0008295.1 MGP_AJ_G0006747.1 mouse_genomes_project 5 109826230 109854563 - E130006D01Rik lincRNA lincRNA MGP_AJ_T0008296.1 MGP_AJ_G0006747.1 mouse_genomes_project 5 109826337 109854538 - E130006D01Rik lincRNA lincRNA MGP_AJ_T0015134.1 MGP_AJ_G0013229.1 mouse_genomes_project 5 113361248 113361611 + processed_pseudogene processed_pseudogene MGP_AJ_T0100021.1 MGP_AJ_G0037987.1 mouse_genomes_project 5 72820340 72820445 - Gm24502 snRNA snRNA MGP_AJ_T0008362.1 MGP_AJ_G0006794.1 mouse_genomes_project 5 121567395 121569384 + Gm38102 lincRNA lincRNA MGP_AJ_T0008366.1 MGP_AJ_G0006794.1 mouse_genomes_project 5 121569214 121571149 + Gm38102 lincRNA lincRNA MGP_AJ_T0075740.1 MGP_AJ_G0030298.1 mouse_genomes_project 5 142261905 142274505 - MGP_AJ_P0075740 Zdhhc4 protein_coding protein_coding MGP_AJ_T0075741.1 MGP_AJ_G0030298.1 mouse_genomes_project 5 142261906 142274469 - MGP_AJ_P0075741 Zdhhc4 protein_coding nonsense_mediated_decay MGP_AJ_T0075742.1 MGP_AJ_G0030298.1 mouse_genomes_project 5 142261913 142271605 - MGP_AJ_P0075742 Zdhhc4 protein_coding protein_coding MGP_AJ_T0075743.1 MGP_AJ_G0030298.1 mouse_genomes_project 5 142265798 142274460 - Zdhhc4 protein_coding processed_transcript MGP_AJ_T0075744.1 MGP_AJ_G0030298.1 mouse_genomes_project 5 142265853 142274472 - MGP_AJ_P0075744 Zdhhc4 protein_coding protein_coding MGP_AJ_T0075745.1 MGP_AJ_G0030298.1 mouse_genomes_project 5 142265859 142274463 - MGP_AJ_P0075745 Zdhhc4 protein_coding protein_coding MGP_AJ_T0075746.1 MGP_AJ_G0030298.1 mouse_genomes_project 5 142269383 142274478 - MGP_AJ_P0075746 Zdhhc4 protein_coding protein_coding MGP_AJ_T0075747.1 MGP_AJ_G0030298.1 mouse_genomes_project 5 142269470 142274478 - Zdhhc4 protein_coding processed_transcript MGP_AJ_T0075748.1 MGP_AJ_G0030298.1 mouse_genomes_project 5 142269485 142274477 - MGP_AJ_P0075748 Zdhhc4 protein_coding protein_coding MGP_AJ_T0075749.1 MGP_AJ_G0030298.1 mouse_genomes_project 5 142269583 142273818 - Zdhhc4 protein_coding retained_intron MGP_AJ_T0075750.1 MGP_AJ_G0030298.1 mouse_genomes_project 5 142271243 142274438 - Zdhhc4 protein_coding processed_transcript MGP_AJ_T0075751.1 MGP_AJ_G0030298.1 mouse_genomes_project 5 142271306 142274441 - Zdhhc4 protein_coding processed_transcript MGP_AJ_T0075752.1 MGP_AJ_G0030298.1 mouse_genomes_project 5 142273543 142274451 - Zdhhc4 protein_coding processed_transcript MGP_AJ_T0008139.1 MGP_AJ_G0006631.1 mouse_genomes_project 5 47694754 47851483 + Gm43016 lincRNA lincRNA MGP_AJ_T0001697.1 MGP_AJ_G0001612.1 mouse_genomes_project 5 71624214 71626971 - TEC TEC MGP_AJ_T0074121.1 MGP_AJ_G0030003.1 mouse_genomes_project 5 120229415 120250679 - MGP_AJ_P0074121 Sh2b3 protein_coding nonsense_mediated_decay MGP_AJ_T0074122.1 MGP_AJ_G0030003.1 mouse_genomes_project 5 120229575 120250713 - MGP_AJ_P0074122 Sh2b3 protein_coding protein_coding MGP_AJ_T0074123.1 MGP_AJ_G0030003.1 mouse_genomes_project 5 120230239 120242664 - MGP_AJ_P0074123 Sh2b3 protein_coding protein_coding MGP_AJ_T0074124.1 MGP_AJ_G0030003.1 mouse_genomes_project 5 120230937 120249983 - MGP_AJ_P0074124 Sh2b3 protein_coding protein_coding MGP_AJ_T0074125.1 MGP_AJ_G0030003.1 mouse_genomes_project 5 120231143 120250704 - MGP_AJ_P0074125 Sh2b3 protein_coding protein_coding MGP_AJ_T0074126.1 MGP_AJ_G0030003.1 mouse_genomes_project 5 120231217 120250671 - MGP_AJ_P0074126 Sh2b3 protein_coding protein_coding MGP_AJ_T0074127.1 MGP_AJ_G0030003.1 mouse_genomes_project 5 120233034 120251500 - MGP_AJ_P0074127 Sh2b3 protein_coding protein_coding MGP_AJ_T0074128.1 MGP_AJ_G0030003.1 mouse_genomes_project 5 120242490 120250143 - MGP_AJ_P0074128 Sh2b3 protein_coding protein_coding MGP_AJ_T0014941.1 MGP_AJ_G0013036.1 mouse_genomes_project 5 31213119 31213576 - processed_pseudogene processed_pseudogene MGP_AJ_T0074827.1 MGP_AJ_G0030121.1 mouse_genomes_project 5 132685090 132726142 + MGP_AJ_P0074827 Gtf2ird2 protein_coding nonsense_mediated_decay MGP_AJ_T0074828.1 MGP_AJ_G0030121.1 mouse_genomes_project 5 132685098 132719933 + MGP_AJ_P0074828 Gtf2ird2 protein_coding protein_coding MGP_AJ_T0074829.1 MGP_AJ_G0030121.1 mouse_genomes_project 5 132685119 132719939 + MGP_AJ_P0074829 Gtf2ird2 protein_coding protein_coding MGP_AJ_T0074830.1 MGP_AJ_G0030121.1 mouse_genomes_project 5 132699459 132700087 + Gtf2ird2 protein_coding processed_transcript MGP_AJ_T0074831.1 MGP_AJ_G0030121.1 mouse_genomes_project 5 132708518 132718001 + Gtf2ird2 protein_coding retained_intron MGP_AJ_T0074832.1 MGP_AJ_G0030121.1 mouse_genomes_project 5 132715895 132718399 + MGP_AJ_P0074832 Gtf2ird2 protein_coding protein_coding MGP_AJ_T0001632.1 MGP_AJ_G0001548.1 mouse_genomes_project 5 62630297 62632674 - TEC TEC MGP_AJ_T0015156.1 MGP_AJ_G0013251.1 mouse_genomes_project 5 132008282 132009248 + processed_pseudogene processed_pseudogene MGP_AJ_T0102645.1 MGP_AJ_G0040387.1 mouse_genomes_project 5 97898618 98045335 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0071632.1 MGP_AJ_G0029498.1 mouse_genomes_project 5 41641455 41978702 - MGP_AJ_P0071632 Ldb2 protein_coding protein_coding MGP_AJ_T0071633.1 MGP_AJ_G0029498.1 mouse_genomes_project 5 41641455 41978722 - MGP_AJ_P0071633 Ldb2 protein_coding protein_coding MGP_AJ_T0071634.1 MGP_AJ_G0029498.1 mouse_genomes_project 5 41641455 41978763 - MGP_AJ_P0071634 Ldb2 protein_coding protein_coding MGP_AJ_T0071635.1 MGP_AJ_G0029498.1 mouse_genomes_project 5 41641463 41978685 - MGP_AJ_P0071635 Ldb2 protein_coding protein_coding MGP_AJ_T0071636.1 MGP_AJ_G0029498.1 mouse_genomes_project 5 41648462 41770822 - Ldb2 protein_coding processed_transcript MGP_AJ_T0071637.1 MGP_AJ_G0029498.1 mouse_genomes_project 5 41699909 41707963 - Ldb2 protein_coding processed_transcript MGP_AJ_T0071638.1 MGP_AJ_G0029498.1 mouse_genomes_project 5 41714468 41978735 - Ldb2 protein_coding retained_intron MGP_AJ_T0074277.1 MGP_AJ_G0030025.1 mouse_genomes_project 5 121290356 121318535 - MGP_AJ_P0074277 Kdm2b protein_coding protein_coding MGP_AJ_T0074278.1 MGP_AJ_G0030025.1 mouse_genomes_project 5 121290367 121409333 - MGP_AJ_P0074278 Kdm2b protein_coding protein_coding MGP_AJ_T0074279.1 MGP_AJ_G0030025.1 mouse_genomes_project 5 121290369 121408570 - MGP_AJ_P0074279 Kdm2b protein_coding protein_coding MGP_AJ_T0074280.1 MGP_AJ_G0030025.1 mouse_genomes_project 5 121291790 121409821 - MGP_AJ_P0074280 Kdm2b protein_coding nonsense_mediated_decay MGP_AJ_T0074281.1 MGP_AJ_G0030025.1 mouse_genomes_project 5 121292196 121408937 - MGP_AJ_P0074281 Kdm2b protein_coding protein_coding MGP_AJ_T0074282.1 MGP_AJ_G0030025.1 mouse_genomes_project 5 121295962 121301551 - Kdm2b protein_coding retained_intron MGP_AJ_T0074283.1 MGP_AJ_G0030025.1 mouse_genomes_project 5 121300973 121306773 - MGP_AJ_P0074283 Kdm2b protein_coding protein_coding MGP_AJ_T0074284.1 MGP_AJ_G0030025.1 mouse_genomes_project 5 121301100 121302699 - Kdm2b protein_coding retained_intron MGP_AJ_T0074285.1 MGP_AJ_G0030025.1 mouse_genomes_project 5 121302681 121336082 - Kdm2b protein_coding processed_transcript MGP_AJ_T0074286.1 MGP_AJ_G0030025.1 mouse_genomes_project 5 121303893 121340465 - Kdm2b protein_coding processed_transcript MGP_AJ_T0074287.1 MGP_AJ_G0030025.1 mouse_genomes_project 5 121303903 121339906 - Kdm2b protein_coding retained_intron MGP_AJ_T0074288.1 MGP_AJ_G0030025.1 mouse_genomes_project 5 121306197 121409129 - Kdm2b protein_coding retained_intron MGP_AJ_T0074289.1 MGP_AJ_G0030025.1 mouse_genomes_project 5 121350684 121408573 - MGP_AJ_P0074289 Kdm2b protein_coding protein_coding MGP_AJ_T0074290.1 MGP_AJ_G0030025.1 mouse_genomes_project 5 121350787 121370528 - MGP_AJ_P0074290 Kdm2b protein_coding protein_coding MGP_AJ_T0074291.1 MGP_AJ_G0030025.1 mouse_genomes_project 5 121350870 121366007 - Kdm2b protein_coding processed_transcript MGP_AJ_T0074292.1 MGP_AJ_G0030025.1 mouse_genomes_project 5 121353039 121371136 - Kdm2b protein_coding processed_transcript MGP_AJ_T0074293.1 MGP_AJ_G0030025.1 mouse_genomes_project 5 121353059 121370012 - Kdm2b protein_coding processed_transcript MGP_AJ_T0074294.1 MGP_AJ_G0030025.1 mouse_genomes_project 5 121358749 121409136 - Kdm2b protein_coding retained_intron MGP_AJ_T0074295.1 MGP_AJ_G0030025.1 mouse_genomes_project 5 121365747 121405023 - Kdm2b protein_coding processed_transcript MGP_AJ_T0075260.1 MGP_AJ_G0030196.1 mouse_genomes_project 5 136062501 136063489 - MGP_AJ_P0075260 Pop7 protein_coding protein_coding MGP_AJ_T0075261.1 MGP_AJ_G0030196.1 mouse_genomes_project 5 136062502 136063582 - MGP_AJ_P0075261 Pop7 protein_coding protein_coding MGP_AJ_T0001755.1 MGP_AJ_G0001670.1 mouse_genomes_project 5 109247280 109249659 + TEC TEC MGP_AJ_T0015150.1 MGP_AJ_G0013245.1 mouse_genomes_project 5 121928794 121929172 + processed_pseudogene processed_pseudogene MGP_AJ_T0070428.1 MGP_AJ_G0029292.1 mouse_genomes_project 5 19426823 19486329 - MGP_AJ_P0070428 Orc5 protein_coding unknown_likely_coding MGP_AJ_T0070429.1 MGP_AJ_G0029292.1 mouse_genomes_project 5 19426828 19486370 - Orc5 protein_coding retained_intron MGP_AJ_T0070430.1 MGP_AJ_G0029292.1 mouse_genomes_project 5 19426832 19486441 - MGP_AJ_P0070430 Orc5 protein_coding protein_coding MGP_AJ_T0070431.1 MGP_AJ_G0029292.1 mouse_genomes_project 5 19452726 19458737 - Orc5 protein_coding retained_intron MGP_AJ_T0070432.1 MGP_AJ_G0029292.1 mouse_genomes_project 5 19459586 19485584 - MGP_AJ_P0070432 Orc5 protein_coding protein_coding MGP_AJ_T0070433.1 MGP_AJ_G0029292.1 mouse_genomes_project 5 19459621 19486441 - Orc5 protein_coding processed_transcript MGP_AJ_T0070434.1 MGP_AJ_G0029292.1 mouse_genomes_project 5 19482463 19486495 - Orc5 protein_coding processed_transcript MGP_AJ_T0008216.1 MGP_AJ_G0006695.1 mouse_genomes_project 5 94523438 94535989 + Gm42601 lincRNA lincRNA MGP_AJ_T0001738.1 MGP_AJ_G0001653.1 mouse_genomes_project 5 101734053 101736834 - TEC TEC MGP_AJ_T0075174.1 MGP_AJ_G0030178.1 mouse_genomes_project 5 135523409 135537039 + MGP_AJ_P0075174 Fis1 protein_coding protein_coding MGP_AJ_T0075175.1 MGP_AJ_G0030178.1 mouse_genomes_project 5 135523540 135536956 + MGP_AJ_P0075175 Fis1 protein_coding protein_coding MGP_AJ_T0075176.1 MGP_AJ_G0030178.1 mouse_genomes_project 5 135532896 135537041 + MGP_AJ_P0075176 Fis1 protein_coding protein_coding MGP_AJ_T0075177.1 MGP_AJ_G0030178.1 mouse_genomes_project 5 135533252 135536764 + Fis1 protein_coding processed_transcript MGP_AJ_T0075178.1 MGP_AJ_G0030178.1 mouse_genomes_project 5 135533263 135536917 + Fis1 protein_coding processed_transcript MGP_AJ_T0075179.1 MGP_AJ_G0030178.1 mouse_genomes_project 5 135533664 135536818 + Fis1 protein_coding processed_transcript MGP_AJ_T0014878.1 MGP_AJ_G0012973.1 mouse_genomes_project 5 17527241 17527546 + processed_pseudogene processed_pseudogene MGP_AJ_T0008222.1 MGP_AJ_G0006701.1 mouse_genomes_project 5 94979600 95002039 + Gm33969 lincRNA lincRNA MGP_AJ_T0070595.1 MGP_AJ_G0029323.1 mouse_genomes_project 5 21835820 22086702 - MGP_AJ_P0070595 Prkag2 protein_coding protein_coding MGP_AJ_T0070596.1 MGP_AJ_G0029323.1 mouse_genomes_project 5 21835824 21977490 - MGP_AJ_P0070596 Prkag2 protein_coding protein_coding MGP_AJ_T0070597.1 MGP_AJ_G0029323.1 mouse_genomes_project 5 21835824 21888045 - MGP_AJ_P0070597 Prkag2 protein_coding protein_coding MGP_AJ_T0070598.1 MGP_AJ_G0029323.1 mouse_genomes_project 5 21836849 21844374 - Prkag2 protein_coding retained_intron MGP_AJ_T0070599.1 MGP_AJ_G0029323.1 mouse_genomes_project 5 21841820 21888085 - MGP_AJ_P0070599 Prkag2 protein_coding protein_coding MGP_AJ_T0070600.1 MGP_AJ_G0029323.1 mouse_genomes_project 5 21844157 21873186 - MGP_AJ_P0070600 Prkag2 protein_coding protein_coding MGP_AJ_T0070601.1 MGP_AJ_G0029323.1 mouse_genomes_project 5 21847495 21861545 - Prkag2 protein_coding retained_intron MGP_AJ_T0070602.1 MGP_AJ_G0029323.1 mouse_genomes_project 5 21848021 21888028 - Prkag2 protein_coding retained_intron MGP_AJ_T0070603.1 MGP_AJ_G0029323.1 mouse_genomes_project 5 21861553 21888760 - MGP_AJ_P0070603 Prkag2 protein_coding protein_coding MGP_AJ_T0070604.1 MGP_AJ_G0029323.1 mouse_genomes_project 5 21885806 21888026 - Prkag2 protein_coding processed_transcript MGP_AJ_T0072832.1 MGP_AJ_G0029736.1 mouse_genomes_project 5 95113790 95115670 - MGP_AJ_P0072832 Gk2 protein_coding protein_coding MGP_AJ_T0001708.1 MGP_AJ_G0001623.1 mouse_genomes_project 5 79086248 79087256 + TEC TEC MGP_AJ_T0100035.1 MGP_AJ_G0038001.1 mouse_genomes_project 5 94552883 94553078 + Gm24623 snRNA snRNA MGP_AJ_T0004782.1 MGP_AJ_G0004127.1 mouse_genomes_project 5 113069137 113075140 - Gm13822 antisense antisense MGP_AJ_T0070327.1 MGP_AJ_G0029272.1 mouse_genomes_project 5 14893920 14952297 + MGP_AJ_P0070327 Gnat3 protein_coding protein_coding MGP_AJ_T0008405.1 MGP_AJ_G0006818.1 mouse_genomes_project 5 127033335 127054905 - 5930412G12Rik lincRNA lincRNA MGP_AJ_T0008406.1 MGP_AJ_G0006818.1 mouse_genomes_project 5 127033335 127039656 - 5930412G12Rik lincRNA lincRNA MGP_AJ_T0008407.1 MGP_AJ_G0006818.1 mouse_genomes_project 5 127033357 127054905 - 5930412G12Rik lincRNA lincRNA MGP_AJ_T0008408.1 MGP_AJ_G0006818.1 mouse_genomes_project 5 127033407 127039656 - 5930412G12Rik lincRNA lincRNA MGP_AJ_T0008409.1 MGP_AJ_G0006818.1 mouse_genomes_project 5 127037317 127054911 - 5930412G12Rik lincRNA lincRNA MGP_AJ_T0008410.1 MGP_AJ_G0006818.1 mouse_genomes_project 5 127038428 127054872 - 5930412G12Rik lincRNA lincRNA MGP_AJ_T0071843.1 MGP_AJ_G0029533.1 mouse_genomes_project 5 61295034 61327194 + MGP_AJ_P0071843 Pgm1 protein_coding protein_coding MGP_AJ_T0071844.1 MGP_AJ_G0029533.1 mouse_genomes_project 5 61305585 61312911 + MGP_AJ_P0071844 Pgm1 protein_coding nonsense_mediated_decay MGP_AJ_T0071845.1 MGP_AJ_G0029533.1 mouse_genomes_project 5 61308641 61310518 + Pgm1 protein_coding retained_intron MGP_AJ_T0071846.1 MGP_AJ_G0029533.1 mouse_genomes_project 5 61314410 61327007 + MGP_AJ_P0071846 Pgm1 protein_coding protein_coding MGP_AJ_T0001493.1 MGP_AJ_G0001412.1 mouse_genomes_project 5 28532494 28533882 + TEC TEC MGP_AJ_T0072683.1 MGP_AJ_G0029708.1 mouse_genomes_project 5 89509421 89540797 - MGP_AJ_P0072683 G3bp2 protein_coding protein_coding MGP_AJ_T0072684.1 MGP_AJ_G0029708.1 mouse_genomes_project 5 89509439 89540959 - MGP_AJ_P0072684 G3bp2 protein_coding protein_coding MGP_AJ_T0072685.1 MGP_AJ_G0029708.1 mouse_genomes_project 5 89510992 89540478 - MGP_AJ_P0072685 G3bp2 protein_coding protein_coding MGP_AJ_T0072686.1 MGP_AJ_G0029708.1 mouse_genomes_project 5 89510992 89540753 - MGP_AJ_P0072686 G3bp2 protein_coding protein_coding MGP_AJ_T0072687.1 MGP_AJ_G0029708.1 mouse_genomes_project 5 89511775 89540898 - MGP_AJ_P0072687 G3bp2 protein_coding protein_coding MGP_AJ_T0072688.1 MGP_AJ_G0029708.1 mouse_genomes_project 5 89513635 89524898 - G3bp2 protein_coding processed_transcript MGP_AJ_T0072689.1 MGP_AJ_G0029708.1 mouse_genomes_project 5 89515096 89524889 - G3bp2 protein_coding retained_intron MGP_AJ_T0072690.1 MGP_AJ_G0029708.1 mouse_genomes_project 5 89523900 89530770 - MGP_AJ_P0072690 G3bp2 protein_coding protein_coding MGP_AJ_T0072691.1 MGP_AJ_G0029708.1 mouse_genomes_project 5 89525690 89540503 - MGP_AJ_P0072691 G3bp2 protein_coding protein_coding MGP_AJ_T0072692.1 MGP_AJ_G0029708.1 mouse_genomes_project 5 89527167 89540957 - G3bp2 protein_coding retained_intron MGP_AJ_T0015135.1 MGP_AJ_G0013230.1 mouse_genomes_project 5 113427545 113427847 + processed_pseudogene processed_pseudogene MGP_AJ_T0008494.1 MGP_AJ_G0006883.1 mouse_genomes_project 5 150609162 150674282 - D730045B01Rik lincRNA lincRNA MGP_AJ_T0008495.1 MGP_AJ_G0006883.1 mouse_genomes_project 5 150610306 150610615 - D730045B01Rik lincRNA lincRNA MGP_AJ_T0008195.1 MGP_AJ_G0006677.1 mouse_genomes_project 5 74740935 74744288 + 1700017L05Rik lincRNA lincRNA MGP_AJ_T0008043.1 MGP_AJ_G0006565.1 mouse_genomes_project 5 2384081 2387229 + lincRNA lincRNA MGP_AJ_T0075543.1 MGP_AJ_G0030252.1 mouse_genomes_project 5 138235523 138237880 + Gpr146 protein_coding processed_transcript MGP_AJ_T0075544.1 MGP_AJ_G0030252.1 mouse_genomes_project 5 138235568 138237881 + Gpr146 protein_coding processed_transcript MGP_AJ_T0075545.1 MGP_AJ_G0030252.1 mouse_genomes_project 5 138235989 138251690 + MGP_AJ_P0075545 Gpr146 protein_coding protein_coding MGP_AJ_T0075546.1 MGP_AJ_G0030252.1 mouse_genomes_project 5 138236046 138237086 + MGP_AJ_P0075546 Gpr146 protein_coding protein_coding MGP_AJ_T0075547.1 MGP_AJ_G0030252.1 mouse_genomes_project 5 138238407 138255342 + MGP_AJ_P0075547 Gpr146 protein_coding protein_coding MGP_AJ_T0075548.1 MGP_AJ_G0030252.1 mouse_genomes_project 5 138248983 138255341 + MGP_AJ_P0075548 Gpr146 protein_coding protein_coding MGP_AJ_T0100040.1 MGP_AJ_G0038006.1 mouse_genomes_project 5 102537086 102537193 + Gm24097 snRNA snRNA MGP_AJ_T0015118.1 MGP_AJ_G0013213.1 mouse_genomes_project 5 107567246 107567823 - processed_pseudogene processed_pseudogene MGP_AJ_T0001615.1 MGP_AJ_G0001532.1 mouse_genomes_project 5 55151652 55153756 + TEC TEC MGP_AJ_T0001788.1 MGP_AJ_G0001703.1 mouse_genomes_project 5 116821325 116822345 + TEC TEC MGP_AJ_T0008266.1 MGP_AJ_G0006731.1 mouse_genomes_project 5 104312263 104389800 - Gm28050 lincRNA lincRNA MGP_AJ_T0008267.1 MGP_AJ_G0006731.1 mouse_genomes_project 5 104369903 104389803 - Gm28050 lincRNA lincRNA MGP_AJ_T0075051.1 MGP_AJ_G0030158.1 mouse_genomes_project 5 134334083 134345995 + MGP_AJ_P0075051 Mdh2 protein_coding protein_coding MGP_AJ_T0075052.1 MGP_AJ_G0030158.1 mouse_genomes_project 5 134334239 134335845 + Mdh2 protein_coding retained_intron MGP_AJ_T0075053.1 MGP_AJ_G0030158.1 mouse_genomes_project 5 134334265 134346002 + MGP_AJ_P0075053 Mdh2 protein_coding nonsense_mediated_decay MGP_AJ_T0075054.1 MGP_AJ_G0030158.1 mouse_genomes_project 5 134334280 134340218 + Mdh2 protein_coding retained_intron MGP_AJ_T0075055.1 MGP_AJ_G0030158.1 mouse_genomes_project 5 134334288 134343255 + MGP_AJ_P0075055 Mdh2 protein_coding protein_coding MGP_AJ_T0075056.1 MGP_AJ_G0030158.1 mouse_genomes_project 5 134334292 134341950 + MGP_AJ_P0075056 Mdh2 protein_coding protein_coding MGP_AJ_T0075057.1 MGP_AJ_G0030158.1 mouse_genomes_project 5 134334325 134339356 + Mdh2 protein_coding retained_intron MGP_AJ_T0070167.1 MGP_AJ_G0029240.1 mouse_genomes_project 5 2600933 2610728 + MGP_AJ_P0070167 protein_coding protein_coding MGP_AJ_T0073131.1 MGP_AJ_G0029806.1 mouse_genomes_project 5 105386695 105430681 - MGP_AJ_P0073131 Glmn protein_coding protein_coding MGP_AJ_T0073132.1 MGP_AJ_G0029806.1 mouse_genomes_project 5 105386697 105430619 - MGP_AJ_P0073132 Glmn protein_coding protein_coding MGP_AJ_T0073133.1 MGP_AJ_G0029806.1 mouse_genomes_project 5 105386750 105389073 - Glmn protein_coding retained_intron MGP_AJ_T0073134.1 MGP_AJ_G0029806.1 mouse_genomes_project 5 105386751 105430930 - MGP_AJ_P0073134 Glmn protein_coding protein_coding MGP_AJ_T0073135.1 MGP_AJ_G0029806.1 mouse_genomes_project 5 105386752 105430586 - MGP_AJ_P0073135 Glmn protein_coding nonsense_mediated_decay MGP_AJ_T0073136.1 MGP_AJ_G0029806.1 mouse_genomes_project 5 105410041 105430608 - Glmn protein_coding processed_transcript MGP_AJ_T0073137.1 MGP_AJ_G0029806.1 mouse_genomes_project 5 105413048 105430681 - Glmn protein_coding processed_transcript MGP_AJ_T0073138.1 MGP_AJ_G0029806.1 mouse_genomes_project 5 105413082 105430588 - MGP_AJ_P0073138 Glmn protein_coding protein_coding MGP_AJ_T0072304.1 MGP_AJ_G0029611.1 mouse_genomes_project 5 73561927 73581708 - MGP_AJ_P0072304 Pdcl2 protein_coding protein_coding MGP_AJ_T0072305.1 MGP_AJ_G0029611.1 mouse_genomes_project 5 73561939 73581731 - MGP_AJ_P0072305 Pdcl2 protein_coding protein_coding MGP_AJ_T0099987.1 MGP_AJ_G0037953.1 mouse_genomes_project 5 6613035 6613137 - Gm23312 snRNA snRNA MGP_AJ_T0100049.1 MGP_AJ_G0038015.1 mouse_genomes_project 5 113664280 113664421 + Gm24407 snRNA snRNA MGP_AJ_T0001838.1 MGP_AJ_G0001752.1 mouse_genomes_project 5 128040928 128043152 + TEC TEC MGP_AJ_T0008396.1 MGP_AJ_G0006811.1 mouse_genomes_project 5 125557478 125558266 + Gm43475 lincRNA lincRNA MGP_AJ_T0014888.1 MGP_AJ_G0012983.1 mouse_genomes_project 5 18832938 18833223 + processed_pseudogene processed_pseudogene MGP_AJ_T0101312.1 MGP_AJ_G0039278.1 mouse_genomes_project 5 116462419 116462551 + Gm25076 snoRNA snoRNA MGP_AJ_T0073585.1 MGP_AJ_G0029899.1 mouse_genomes_project 5 112387575 112407691 - MGP_AJ_P0073585 Foxn4 protein_coding protein_coding MGP_AJ_T0073586.1 MGP_AJ_G0029899.1 mouse_genomes_project 5 112388996 112396560 - MGP_AJ_P0073586 Foxn4 protein_coding nonsense_mediated_decay MGP_AJ_T0073587.1 MGP_AJ_G0029899.1 mouse_genomes_project 5 112393779 112407586 - MGP_AJ_P0073587 Foxn4 protein_coding protein_coding MGP_AJ_T0073588.1 MGP_AJ_G0029899.1 mouse_genomes_project 5 112396145 112407633 - Foxn4 protein_coding retained_intron MGP_AJ_T0070781.1 MGP_AJ_G0029362.1 mouse_genomes_project 5 27834330 27887522 + MGP_AJ_P0070781 Mapre3 protein_coding protein_coding MGP_AJ_T0070782.1 MGP_AJ_G0029362.1 mouse_genomes_project 5 27834422 27887475 + Mapre3 protein_coding retained_intron MGP_AJ_T0070783.1 MGP_AJ_G0029362.1 mouse_genomes_project 5 27834443 27887475 + MGP_AJ_P0070783 Mapre3 protein_coding protein_coding MGP_AJ_T0070784.1 MGP_AJ_G0029362.1 mouse_genomes_project 5 27834449 27883993 + Mapre3 protein_coding retained_intron MGP_AJ_T0070785.1 MGP_AJ_G0029362.1 mouse_genomes_project 5 27875060 27884774 + MGP_AJ_P0070785 Mapre3 protein_coding protein_coding MGP_AJ_T0070786.1 MGP_AJ_G0029362.1 mouse_genomes_project 5 27885937 27886671 + Mapre3 protein_coding retained_intron MGP_AJ_T0098689.1 MGP_AJ_G0036673.1 mouse_genomes_project 5 50333073 50333152 + n-R5s171 rRNA rRNA MGP_AJ_T0074416.1 MGP_AJ_G0030044.1 mouse_genomes_project 5 122206952 122211188 + Kntc1 protein_coding retained_intron MGP_AJ_T0074417.1 MGP_AJ_G0030044.1 mouse_genomes_project 5 122206962 122280704 + MGP_AJ_P0074417 Kntc1 protein_coding protein_coding MGP_AJ_T0074418.1 MGP_AJ_G0030044.1 mouse_genomes_project 5 122231225 122238067 + Kntc1 protein_coding processed_transcript MGP_AJ_T0074419.1 MGP_AJ_G0030044.1 mouse_genomes_project 5 122239613 122240504 + MGP_AJ_P0074419 Kntc1 protein_coding protein_coding MGP_AJ_T0074420.1 MGP_AJ_G0030044.1 mouse_genomes_project 5 122245635 122248550 + Kntc1 protein_coding retained_intron MGP_AJ_T0074421.1 MGP_AJ_G0030044.1 mouse_genomes_project 5 122270569 122280702 + MGP_AJ_P0074421 Kntc1 protein_coding nonsense_mediated_decay MGP_AJ_T0074422.1 MGP_AJ_G0030044.1 mouse_genomes_project 5 122278643 122280703 + Kntc1 protein_coding retained_intron MGP_AJ_T0001815.1 MGP_AJ_G0001730.1 mouse_genomes_project 5 121858042 121860190 + TEC TEC MGP_AJ_T0073747.1 MGP_AJ_G0029931.1 mouse_genomes_project 5 113498284 113506684 - MGP_AJ_P0073747 Gatc protein_coding protein_coding MGP_AJ_T0075203.1 MGP_AJ_G0030184.1 mouse_genomes_project 5 135634271 135644829 - MGP_AJ_P0075203 Serpine1 protein_coding protein_coding MGP_AJ_T0075204.1 MGP_AJ_G0030184.1 mouse_genomes_project 5 135634279 135644824 - MGP_AJ_P0075204 Serpine1 protein_coding protein_coding MGP_AJ_T0075205.1 MGP_AJ_G0030184.1 mouse_genomes_project 5 135642873 135644838 - Serpine1 protein_coding retained_intron MGP_AJ_T0008417.1 MGP_AJ_G0006824.1 mouse_genomes_project 5 132586525 132587322 - Gm15627 lincRNA lincRNA MGP_AJ_T0008318.1 MGP_AJ_G0006761.1 mouse_genomes_project 5 112690265 112692993 + Gm13790 lincRNA lincRNA MGP_AJ_T0075391.1 MGP_AJ_G0030224.1 mouse_genomes_project 5 136775440 136779016 + MGP_AJ_P0075391 Cops6 protein_coding protein_coding MGP_AJ_T0075392.1 MGP_AJ_G0030224.1 mouse_genomes_project 5 136775469 136778348 + MGP_AJ_P0075392 Cops6 protein_coding protein_coding MGP_AJ_T0075393.1 MGP_AJ_G0030224.1 mouse_genomes_project 5 136775478 136776754 + Cops6 protein_coding retained_intron MGP_AJ_T0075394.1 MGP_AJ_G0030224.1 mouse_genomes_project 5 136775538 136778509 + Cops6 protein_coding retained_intron MGP_AJ_T0075395.1 MGP_AJ_G0030224.1 mouse_genomes_project 5 136777146 136778289 + MGP_AJ_P0075395 Cops6 protein_coding protein_coding MGP_AJ_T0073287.1 MGP_AJ_G0029843.1 mouse_genomes_project 5 108181489 108182847 - Gtpbp6 protein_coding retained_intron MGP_AJ_T0073288.1 MGP_AJ_G0029843.1 mouse_genomes_project 5 108181490 108184714 - Gtpbp6 protein_coding retained_intron MGP_AJ_T0073289.1 MGP_AJ_G0029843.1 mouse_genomes_project 5 108181532 108185682 - MGP_AJ_P0073289 Gtpbp6 protein_coding protein_coding MGP_AJ_T0073290.1 MGP_AJ_G0029843.1 mouse_genomes_project 5 108182419 108184688 - Gtpbp6 protein_coding processed_transcript MGP_AJ_T0073291.1 MGP_AJ_G0029843.1 mouse_genomes_project 5 108182743 108184928 - MGP_AJ_P0073291 Gtpbp6 protein_coding protein_coding MGP_AJ_T0073292.1 MGP_AJ_G0029843.1 mouse_genomes_project 5 108183302 108184436 - Gtpbp6 protein_coding retained_intron MGP_AJ_T0073293.1 MGP_AJ_G0029843.1 mouse_genomes_project 5 108184160 108185651 - Gtpbp6 protein_coding processed_transcript MGP_AJ_T0073294.1 MGP_AJ_G0029843.1 mouse_genomes_project 5 108184212 108185118 - Gtpbp6 protein_coding retained_intron MGP_AJ_T0073295.1 MGP_AJ_G0029843.1 mouse_genomes_project 5 108184359 108184944 - Gtpbp6 protein_coding retained_intron MGP_AJ_T0073296.1 MGP_AJ_G0029843.1 mouse_genomes_project 5 108184547 108185222 - Gtpbp6 protein_coding retained_intron MGP_AJ_T0073297.1 MGP_AJ_G0029843.1 mouse_genomes_project 5 108184560 108185672 - Gtpbp6 protein_coding retained_intron MGP_AJ_T0071093.1 MGP_AJ_G0029407.1 mouse_genomes_project 5 30162081 30164262 + protein_coding retained_intron MGP_AJ_T0001868.1 MGP_AJ_G0001782.1 mouse_genomes_project 5 130970776 130972936 - TEC TEC MGP_AJ_T0072718.1 MGP_AJ_G0029715.1 mouse_genomes_project 5 89798194 89862787 + MGP_AJ_P0072718 Art3 protein_coding protein_coding MGP_AJ_T0072719.1 MGP_AJ_G0029715.1 mouse_genomes_project 5 89798197 89862984 + MGP_AJ_P0072719 Art3 protein_coding protein_coding MGP_AJ_T0072720.1 MGP_AJ_G0029715.1 mouse_genomes_project 5 89798208 89813929 + Art3 protein_coding processed_transcript MGP_AJ_T0072721.1 MGP_AJ_G0029715.1 mouse_genomes_project 5 89798208 89889926 + MGP_AJ_P0072721 Art3 protein_coding protein_coding MGP_AJ_T0072722.1 MGP_AJ_G0029715.1 mouse_genomes_project 5 89798208 89889923 + MGP_AJ_P0072722 Art3 protein_coding protein_coding MGP_AJ_T0072727.1 MGP_AJ_G0029715.1 mouse_genomes_project 5 89846841 89862899 + MGP_AJ_P0072727 Art3 protein_coding protein_coding MGP_AJ_T0072728.1 MGP_AJ_G0029715.1 mouse_genomes_project 5 89856739 89862870 + MGP_AJ_P0072728 Art3 protein_coding protein_coding MGP_AJ_T0072729.1 MGP_AJ_G0029715.1 mouse_genomes_project 5 89857615 89862578 + MGP_AJ_P0072729 Art3 protein_coding protein_coding MGP_AJ_T0072730.1 MGP_AJ_G0029715.1 mouse_genomes_project 5 89857698 89862448 + MGP_AJ_P0072730 Art3 protein_coding protein_coding MGP_AJ_T0072731.1 MGP_AJ_G0029715.1 mouse_genomes_project 5 89857703 89862829 + MGP_AJ_P0072731 Art3 protein_coding protein_coding MGP_AJ_T0072732.1 MGP_AJ_G0029715.1 mouse_genomes_project 5 89857995 89889920 + Art3 protein_coding processed_transcript MGP_AJ_T0072733.1 MGP_AJ_G0029715.1 mouse_genomes_project 5 89857995 89889920 + MGP_AJ_P0072733 Art3 protein_coding protein_coding MGP_AJ_T0072734.1 MGP_AJ_G0029715.1 mouse_genomes_project 5 89857995 89889920 + MGP_AJ_P0072734 Art3 protein_coding protein_coding MGP_AJ_T0072735.1 MGP_AJ_G0029715.1 mouse_genomes_project 5 89857995 89889921 + MGP_AJ_P0072735 Art3 protein_coding protein_coding MGP_AJ_T0072736.1 MGP_AJ_G0029715.1 mouse_genomes_project 5 89857995 89889920 + MGP_AJ_P0072736 Art3 protein_coding protein_coding MGP_AJ_T0072737.1 MGP_AJ_G0029715.1 mouse_genomes_project 5 89857995 89889920 + MGP_AJ_P0072737 Art3 protein_coding protein_coding MGP_AJ_T0072738.1 MGP_AJ_G0029715.1 mouse_genomes_project 5 89862437 89889920 + MGP_AJ_P0072738 Art3 protein_coding protein_coding MGP_AJ_T0072739.1 MGP_AJ_G0029715.1 mouse_genomes_project 5 89862911 89889921 + MGP_AJ_P0072739 Art3 protein_coding protein_coding MGP_AJ_T0072740.1 MGP_AJ_G0029715.1 mouse_genomes_project 5 89877336 89889745 + MGP_AJ_P0072740 Art3 protein_coding protein_coding MGP_AJ_T0015068.1 MGP_AJ_G0013163.1 mouse_genomes_project 5 89200578 89200953 - processed_pseudogene processed_pseudogene MGP_AJ_T0072900.1 MGP_AJ_G0029752.1 mouse_genomes_project 5 98132938 98192045 - MGP_AJ_P0072900 Lin54 protein_coding protein_coding MGP_AJ_T0072901.1 MGP_AJ_G0029752.1 mouse_genomes_project 5 98132948 98190030 - MGP_AJ_P0072901 Lin54 protein_coding protein_coding MGP_AJ_T0072902.1 MGP_AJ_G0029752.1 mouse_genomes_project 5 98133053 98192081 - MGP_AJ_P0072902 Lin54 protein_coding protein_coding MGP_AJ_T0072903.1 MGP_AJ_G0029752.1 mouse_genomes_project 5 98133053 98190072 - MGP_AJ_P0072903 Lin54 protein_coding protein_coding MGP_AJ_T0072904.1 MGP_AJ_G0029752.1 mouse_genomes_project 5 98133062 98190017 - MGP_AJ_P0072904 Lin54 protein_coding protein_coding MGP_AJ_T0072905.1 MGP_AJ_G0029752.1 mouse_genomes_project 5 98133220 98192094 - MGP_AJ_P0072905 Lin54 protein_coding nonsense_mediated_decay MGP_AJ_T0072906.1 MGP_AJ_G0029752.1 mouse_genomes_project 5 98134572 98189962 - MGP_AJ_P0072906 Lin54 protein_coding nonsense_mediated_decay MGP_AJ_T0072907.1 MGP_AJ_G0029752.1 mouse_genomes_project 5 98134572 98189962 - MGP_AJ_P0072907 Lin54 protein_coding protein_coding MGP_AJ_T0072908.1 MGP_AJ_G0029752.1 mouse_genomes_project 5 98150521 98177152 - MGP_AJ_P0072908 Lin54 protein_coding nonsense_mediated_decay MGP_AJ_T0072909.1 MGP_AJ_G0029752.1 mouse_genomes_project 5 98176069 98190017 - Lin54 protein_coding retained_intron MGP_AJ_T0010724.1 MGP_AJ_G0008846.1 mouse_genomes_project 5 135845655 135845752 + Mir8116 miRNA miRNA MGP_AJ_T0101310.1 MGP_AJ_G0039276.1 mouse_genomes_project 5 108409633 108409785 + Gm26277 snoRNA snoRNA MGP_AJ_T0004780.1 MGP_AJ_G0004125.1 mouse_genomes_project 5 112858363 112858930 - Gm42789 antisense antisense MGP_AJ_T0008257.1 MGP_AJ_G0006723.1 mouse_genomes_project 5 103208544 103214218 + Gm26519 lincRNA lincRNA MGP_AJ_T0071404.1 MGP_AJ_G0029454.1 mouse_genomes_project 5 33400760 33403307 + MGP_AJ_P0071404 Psapl1 protein_coding protein_coding MGP_AJ_T0008430.1 MGP_AJ_G0006834.1 mouse_genomes_project 5 136818641 136914333 - lincRNA lincRNA MGP_AJ_T0004872.1 MGP_AJ_G0004189.1 mouse_genomes_project 5 138968052 138974445 + Gm16121 antisense antisense MGP_AJ_T0073200.1 MGP_AJ_G0029816.1 mouse_genomes_project 5 106125257 106137135 + MGP_AJ_P0073200 Dr1 protein_coding protein_coding MGP_AJ_T0073201.1 MGP_AJ_G0029816.1 mouse_genomes_project 5 106133419 106135110 + Dr1 protein_coding processed_transcript MGP_AJ_T0001881.1 MGP_AJ_G0001794.1 mouse_genomes_project 5 134020263 134021904 - TEC TEC MGP_AJ_T0015191.1 MGP_AJ_G0013286.1 mouse_genomes_project 5 143016866 143017823 - processed_pseudogene processed_pseudogene MGP_AJ_T0001771.1 MGP_AJ_G0001686.1 mouse_genomes_project 5 112984846 112991073 - TEC TEC MGP_AJ_T0072936.1 MGP_AJ_G0029758.1 mouse_genomes_project 5 98495997 98501735 + MGP_AJ_P0072936 Mrps18c protein_coding protein_coding MGP_AJ_T0072937.1 MGP_AJ_G0029758.1 mouse_genomes_project 5 98496042 98496989 + Mrps18c protein_coding retained_intron MGP_AJ_T0072938.1 MGP_AJ_G0029758.1 mouse_genomes_project 5 98496042 98501795 + MGP_AJ_P0072938 Mrps18c protein_coding nonsense_mediated_decay MGP_AJ_T0072939.1 MGP_AJ_G0029758.1 mouse_genomes_project 5 98496046 98501798 + MGP_AJ_P0072939 Mrps18c protein_coding protein_coding MGP_AJ_T0072940.1 MGP_AJ_G0029758.1 mouse_genomes_project 5 98501236 98501796 + Mrps18c protein_coding retained_intron MGP_AJ_T0015139.1 MGP_AJ_G0013234.1 mouse_genomes_project 5 115248705 115249286 + processed_pseudogene processed_pseudogene MGP_AJ_T0075825.1 MGP_AJ_G0030316.1 mouse_genomes_project 5 143103715 143132596 - MGP_AJ_P0075825 Tecpr1 protein_coding protein_coding MGP_AJ_T0075826.1 MGP_AJ_G0030316.1 mouse_genomes_project 5 143104621 143132528 - Tecpr1 protein_coding retained_intron MGP_AJ_T0075827.1 MGP_AJ_G0030316.1 mouse_genomes_project 5 143105397 143107466 - Tecpr1 protein_coding retained_intron MGP_AJ_T0075828.1 MGP_AJ_G0030316.1 mouse_genomes_project 5 143105402 143108282 - Tecpr1 protein_coding retained_intron MGP_AJ_T0075829.1 MGP_AJ_G0030316.1 mouse_genomes_project 5 143107854 143109057 - Tecpr1 protein_coding retained_intron MGP_AJ_T0075830.1 MGP_AJ_G0030316.1 mouse_genomes_project 5 143109758 143112854 - Tecpr1 protein_coding retained_intron MGP_AJ_T0075831.1 MGP_AJ_G0030316.1 mouse_genomes_project 5 143116755 143117912 - Tecpr1 protein_coding processed_transcript MGP_AJ_T0075832.1 MGP_AJ_G0030316.1 mouse_genomes_project 5 143118517 143124539 - Tecpr1 protein_coding retained_intron MGP_AJ_T0075833.1 MGP_AJ_G0030316.1 mouse_genomes_project 5 143118526 143132533 - Tecpr1 protein_coding retained_intron MGP_AJ_T0075834.1 MGP_AJ_G0030316.1 mouse_genomes_project 5 143121239 143132587 - Tecpr1 protein_coding retained_intron MGP_AJ_T0075835.1 MGP_AJ_G0030316.1 mouse_genomes_project 5 143127298 143132539 - Tecpr1 protein_coding retained_intron MGP_AJ_T0075836.1 MGP_AJ_G0030316.1 mouse_genomes_project 5 143129368 143132504 - Tecpr1 protein_coding retained_intron MGP_AJ_T0010677.1 MGP_AJ_G0008799.1 mouse_genomes_project 5 49307658 49307774 - Mir6417 miRNA miRNA MGP_AJ_T0001800.1 MGP_AJ_G0001715.1 mouse_genomes_project 5 119846588 119847677 + TEC TEC MGP_AJ_T0071018.1 MGP_AJ_G0029396.1 mouse_genomes_project 5 28670412 28728823 + Mrpl33 protein_coding processed_transcript MGP_AJ_T0071019.1 MGP_AJ_G0029396.1 mouse_genomes_project 5 28672151 28696624 + Mrpl33 protein_coding processed_transcript MGP_AJ_T0071020.1 MGP_AJ_G0029396.1 mouse_genomes_project 5 28687922 28696624 + MGP_AJ_P0071020 Mrpl33 protein_coding protein_coding MGP_AJ_T0071021.1 MGP_AJ_G0029396.1 mouse_genomes_project 5 28687939 28715764 + Mrpl33 protein_coding processed_transcript MGP_AJ_T0071022.1 MGP_AJ_G0029396.1 mouse_genomes_project 5 28687955 28728823 + Mrpl33 protein_coding processed_transcript MGP_AJ_T0071023.1 MGP_AJ_G0029396.1 mouse_genomes_project 5 28687968 28738347 + MGP_AJ_P0071023 Mrpl33 protein_coding nonsense_mediated_decay MGP_AJ_T0071024.1 MGP_AJ_G0029396.1 mouse_genomes_project 5 28687996 28696622 + Mrpl33 protein_coding retained_intron MGP_AJ_T0071025.1 MGP_AJ_G0029396.1 mouse_genomes_project 5 28688000 28696617 + Mrpl33 protein_coding processed_transcript MGP_AJ_T0071026.1 MGP_AJ_G0029396.1 mouse_genomes_project 5 28688135 28696552 + Mrpl33 protein_coding retained_intron MGP_AJ_T0071029.1 MGP_AJ_G0029396.1 mouse_genomes_project 5 28728586 28732093 + Mrpl33 protein_coding processed_transcript MGP_AJ_T0071030.1 MGP_AJ_G0029396.1 mouse_genomes_project 5 28729457 28737394 + Mrpl33 protein_coding processed_transcript MGP_AJ_T0099058.1 MGP_AJ_G0037034.1 mouse_genomes_project 5 132801828 132802244 - Gm43480 sense_intronic sense_intronic MGP_AJ_T0071680.1 MGP_AJ_G0029506.1 mouse_genomes_project 5 45155934 45486440 + MGP_AJ_P0071680 Slit2 protein_coding protein_coding MGP_AJ_T0071681.1 MGP_AJ_G0029506.1 mouse_genomes_project 5 45155950 45163122 + Slit2 protein_coding retained_intron MGP_AJ_T0071682.1 MGP_AJ_G0029506.1 mouse_genomes_project 5 45155950 45361099 + Slit2 protein_coding retained_intron MGP_AJ_T0071683.1 MGP_AJ_G0029506.1 mouse_genomes_project 5 45155950 45484217 + MGP_AJ_P0071683 Slit2 protein_coding protein_coding MGP_AJ_T0071684.1 MGP_AJ_G0029506.1 mouse_genomes_project 5 45155950 45484217 + MGP_AJ_P0071684 Slit2 protein_coding protein_coding MGP_AJ_T0071685.1 MGP_AJ_G0029506.1 mouse_genomes_project 5 45155950 45483102 + MGP_AJ_P0071685 Slit2 protein_coding nonsense_mediated_decay MGP_AJ_T0071686.1 MGP_AJ_G0029506.1 mouse_genomes_project 5 45155950 45484217 + MGP_AJ_P0071686 Slit2 protein_coding protein_coding MGP_AJ_T0071687.1 MGP_AJ_G0029506.1 mouse_genomes_project 5 45155954 45258289 + Slit2 protein_coding processed_transcript MGP_AJ_T0071688.1 MGP_AJ_G0029506.1 mouse_genomes_project 5 45155973 45158465 + Slit2 protein_coding retained_intron MGP_AJ_T0071689.1 MGP_AJ_G0029506.1 mouse_genomes_project 5 45157790 45351107 + Slit2 protein_coding processed_transcript MGP_AJ_T0071690.1 MGP_AJ_G0029506.1 mouse_genomes_project 5 45160631 45368948 + MGP_AJ_P0071690 Slit2 protein_coding nonsense_mediated_decay MGP_AJ_T0071691.1 MGP_AJ_G0029506.1 mouse_genomes_project 5 45347103 45370155 + Slit2 protein_coding processed_transcript MGP_AJ_T0071692.1 MGP_AJ_G0029506.1 mouse_genomes_project 5 45352181 45356979 + Slit2 protein_coding retained_intron MGP_AJ_T0071693.1 MGP_AJ_G0029506.1 mouse_genomes_project 5 45360042 45397887 + Slit2 protein_coding retained_intron MGP_AJ_T0071694.1 MGP_AJ_G0029506.1 mouse_genomes_project 5 45367408 45408178 + Slit2 protein_coding processed_transcript MGP_AJ_T0071695.1 MGP_AJ_G0029506.1 mouse_genomes_project 5 45401629 45416510 + Slit2 protein_coding processed_transcript MGP_AJ_T0071696.1 MGP_AJ_G0029506.1 mouse_genomes_project 5 45409542 45461655 + Slit2 protein_coding retained_intron MGP_AJ_T0071697.1 MGP_AJ_G0029506.1 mouse_genomes_project 5 45416558 45438264 + MGP_AJ_P0071697 Slit2 protein_coding protein_coding MGP_AJ_T0071698.1 MGP_AJ_G0029506.1 mouse_genomes_project 5 45423674 45426542 + Slit2 protein_coding retained_intron MGP_AJ_T0071699.1 MGP_AJ_G0029506.1 mouse_genomes_project 5 45427106 45441349 + Slit2 protein_coding retained_intron MGP_AJ_T0071700.1 MGP_AJ_G0029506.1 mouse_genomes_project 5 45435270 45438218 + Slit2 protein_coding retained_intron MGP_AJ_T0071701.1 MGP_AJ_G0029506.1 mouse_genomes_project 5 45453944 45460507 + Slit2 protein_coding retained_intron MGP_AJ_T0071702.1 MGP_AJ_G0029506.1 mouse_genomes_project 5 45460485 45481218 + MGP_AJ_P0071702 Slit2 protein_coding nonsense_mediated_decay MGP_AJ_T0073174.1 MGP_AJ_G0029813.1 mouse_genomes_project 5 105913751 105955623 + Mtf2 protein_coding processed_transcript MGP_AJ_T0073175.1 MGP_AJ_G0029813.1 mouse_genomes_project 5 105913788 105955918 + MGP_AJ_P0073175 Mtf2 protein_coding nonsense_mediated_decay MGP_AJ_T0073176.1 MGP_AJ_G0029813.1 mouse_genomes_project 5 105913793 105956084 + Mtf2 protein_coding processed_transcript MGP_AJ_T0073177.1 MGP_AJ_G0029813.1 mouse_genomes_project 5 105913793 105956729 + Mtf2 protein_coding processed_transcript MGP_AJ_T0073178.1 MGP_AJ_G0029813.1 mouse_genomes_project 5 105913794 105917857 + Mtf2 protein_coding retained_intron MGP_AJ_T0073179.1 MGP_AJ_G0029813.1 mouse_genomes_project 5 105913806 105935658 + MGP_AJ_P0073179 Mtf2 protein_coding protein_coding MGP_AJ_T0073180.1 MGP_AJ_G0029813.1 mouse_genomes_project 5 105913819 105955427 + MGP_AJ_P0073180 Mtf2 protein_coding nonsense_mediated_decay MGP_AJ_T0073181.1 MGP_AJ_G0029813.1 mouse_genomes_project 5 105913819 105956730 + MGP_AJ_P0073181 Mtf2 protein_coding nonsense_mediated_decay MGP_AJ_T0073182.1 MGP_AJ_G0029813.1 mouse_genomes_project 5 105913819 105957464 + MGP_AJ_P0073182 Mtf2 protein_coding protein_coding MGP_AJ_T0073183.1 MGP_AJ_G0029813.1 mouse_genomes_project 5 105913821 105955545 + MGP_AJ_P0073183 Mtf2 protein_coding protein_coding MGP_AJ_T0073184.1 MGP_AJ_G0029813.1 mouse_genomes_project 5 105913821 105942584 + MGP_AJ_P0073184 Mtf2 protein_coding protein_coding MGP_AJ_T0073185.1 MGP_AJ_G0029813.1 mouse_genomes_project 5 105913834 105936246 + Mtf2 protein_coding processed_transcript MGP_AJ_T0073186.1 MGP_AJ_G0029813.1 mouse_genomes_project 5 105921184 105929490 + Mtf2 protein_coding processed_transcript MGP_AJ_T0073187.1 MGP_AJ_G0029813.1 mouse_genomes_project 5 105926407 105955930 + Mtf2 protein_coding processed_transcript MGP_AJ_T0073188.1 MGP_AJ_G0029813.1 mouse_genomes_project 5 105935285 105949172 + MGP_AJ_P0073188 Mtf2 protein_coding protein_coding MGP_AJ_T0073189.1 MGP_AJ_G0029813.1 mouse_genomes_project 5 105940401 105952383 + MGP_AJ_P0073189 Mtf2 protein_coding nonsense_mediated_decay MGP_AJ_T0071896.1 MGP_AJ_G0029543.1 mouse_genomes_project 5 62566900 62603633 + MGP_AJ_P0071896 Klb protein_coding protein_coding MGP_AJ_T0071897.1 MGP_AJ_G0029543.1 mouse_genomes_project 5 62566993 62568832 + Klb protein_coding retained_intron MGP_AJ_T0071898.1 MGP_AJ_G0029543.1 mouse_genomes_project 5 62566994 62599129 + MGP_AJ_P0071898 Klb protein_coding nonsense_mediated_decay MGP_AJ_T0004701.1 MGP_AJ_G0004065.1 mouse_genomes_project 5 50738508 50739477 - Gm42747 antisense antisense MGP_AJ_T0001535.1 MGP_AJ_G0001453.1 mouse_genomes_project 5 41520767 41521110 + TEC TEC MGP_AJ_T0074626.1 MGP_AJ_G0030082.1 mouse_genomes_project 5 125691255 126009038 + MGP_AJ_P0074626 Tmem132c protein_coding protein_coding MGP_AJ_T0074627.1 MGP_AJ_G0030082.1 mouse_genomes_project 5 125691273 125732179 + Tmem132c protein_coding processed_transcript MGP_AJ_T0074628.1 MGP_AJ_G0030082.1 mouse_genomes_project 5 125994669 126008111 + Tmem132c protein_coding processed_transcript MGP_AJ_T0074629.1 MGP_AJ_G0030082.1 mouse_genomes_project 5 125996420 126007731 + MGP_AJ_P0074629 Tmem132c protein_coding protein_coding MGP_AJ_T0073004.1 MGP_AJ_G0029771.1 mouse_genomes_project 5 101735742 101748291 + MGP_AJ_P0073004 Nudt9 protein_coding protein_coding MGP_AJ_T0073005.1 MGP_AJ_G0029771.1 mouse_genomes_project 5 101735962 101749871 + MGP_AJ_P0073005 Nudt9 protein_coding protein_coding MGP_AJ_T0073006.1 MGP_AJ_G0029771.1 mouse_genomes_project 5 101736305 101755468 + MGP_AJ_P0073006 Nudt9 protein_coding protein_coding MGP_AJ_T0073007.1 MGP_AJ_G0029771.1 mouse_genomes_project 5 101736404 101748525 + Nudt9 protein_coding retained_intron MGP_AJ_T0073008.1 MGP_AJ_G0029771.1 mouse_genomes_project 5 101736590 101748271 + MGP_AJ_P0073008 Nudt9 protein_coding protein_coding MGP_AJ_T0073009.1 MGP_AJ_G0029771.1 mouse_genomes_project 5 101737057 101745614 + MGP_AJ_P0073009 Nudt9 protein_coding protein_coding MGP_AJ_T0001753.1 MGP_AJ_G0001668.1 mouse_genomes_project 5 109074265 109074817 + TEC TEC MGP_AJ_T0008175.1 MGP_AJ_G0006660.1 mouse_genomes_project 5 71205207 71207203 + C78283 lincRNA lincRNA MGP_AJ_T0008141.1 MGP_AJ_G0006633.1 mouse_genomes_project 5 49373358 49390004 - C130083M11Rik lincRNA lincRNA MGP_AJ_T0001806.1 MGP_AJ_G0001721.1 mouse_genomes_project 5 120792258 120792571 + TEC TEC MGP_AJ_T0008252.1 MGP_AJ_G0006722.1 mouse_genomes_project 5 102224199 102255592 + D930016D06Rik lincRNA lincRNA MGP_AJ_T0008253.1 MGP_AJ_G0006722.1 mouse_genomes_project 5 102224333 102238732 + D930016D06Rik lincRNA lincRNA MGP_AJ_T0008254.1 MGP_AJ_G0006722.1 mouse_genomes_project 5 102239978 102253222 + D930016D06Rik lincRNA lincRNA MGP_AJ_T0008255.1 MGP_AJ_G0006722.1 mouse_genomes_project 5 102240528 102252632 + D930016D06Rik lincRNA lincRNA MGP_AJ_T0008256.1 MGP_AJ_G0006722.1 mouse_genomes_project 5 102240570 102254832 + D930016D06Rik lincRNA lincRNA MGP_AJ_T0018158.1 MGP_AJ_G0015579.1 mouse_genomes_project 5 64724933 64732659 + C330024D21Rik processed_transcript retained_intron MGP_AJ_T0018159.1 MGP_AJ_G0015579.1 mouse_genomes_project 5 64724936 64739471 + C330024D21Rik processed_transcript lincRNA MGP_AJ_T0018160.1 MGP_AJ_G0015579.1 mouse_genomes_project 5 64724939 64739137 + C330024D21Rik processed_transcript lincRNA MGP_AJ_T0100029.1 MGP_AJ_G0037995.1 mouse_genomes_project 5 83506176 83506283 - Gm25473 snRNA snRNA MGP_AJ_T0015100.1 MGP_AJ_G0013195.1 mouse_genomes_project 5 104558969 104559617 - processed_pseudogene processed_pseudogene MGP_AJ_T0073018.1 MGP_AJ_G0029777.1 mouse_genomes_project 5 102010257 102021997 + MGP_AJ_P0073018 Mepe protein_coding protein_coding MGP_AJ_T0101284.1 MGP_AJ_G0039250.1 mouse_genomes_project 5 55601099 55601233 + Gm22536 snoRNA snoRNA MGP_AJ_T0073495.1 MGP_AJ_G0029881.1 mouse_genomes_project 5 111352072 111364256 + MGP_AJ_P0073495 Tmem211 protein_coding protein_coding MGP_AJ_T0001449.1 MGP_AJ_G0001370.1 mouse_genomes_project 5 9401943 9405564 + TEC TEC MGP_AJ_T0071738.1 MGP_AJ_G0029512.1 mouse_genomes_project 5 49546978 49554605 + MGP_AJ_P0071738 Sod3 protein_coding protein_coding MGP_AJ_T0004700.1 MGP_AJ_G0004064.1 mouse_genomes_project 5 50711270 50714740 - Gm10441 antisense antisense MGP_AJ_T0072220.1 MGP_AJ_G0029597.1 mouse_genomes_project 5 70901284 70930467 + MGP_AJ_P0072220 Spata18 protein_coding protein_coding MGP_AJ_T0072221.1 MGP_AJ_G0029597.1 mouse_genomes_project 5 70901287 70926378 + MGP_AJ_P0072221 Spata18 protein_coding non_stop_decay MGP_AJ_T0072222.1 MGP_AJ_G0029597.1 mouse_genomes_project 5 70908537 70930437 + MGP_AJ_P0072222 Spata18 protein_coding protein_coding MGP_AJ_T0072223.1 MGP_AJ_G0029597.1 mouse_genomes_project 5 70910271 70930439 + MGP_AJ_P0072223 Spata18 protein_coding protein_coding MGP_AJ_T0010716.1 MGP_AJ_G0008838.1 mouse_genomes_project 5 133087400 133087439 + Mir7228 miRNA miRNA MGP_AJ_T0074035.1 MGP_AJ_G0029990.1 mouse_genomes_project 5 119712591 119713998 - Trafd1 protein_coding retained_intron MGP_AJ_T0074036.1 MGP_AJ_G0029990.1 mouse_genomes_project 5 119712591 119719629 - MGP_AJ_P0074036 Trafd1 protein_coding nonsense_mediated_decay MGP_AJ_T0074037.1 MGP_AJ_G0029990.1 mouse_genomes_project 5 119712591 119726959 - MGP_AJ_P0074037 Trafd1 protein_coding protein_coding MGP_AJ_T0074038.1 MGP_AJ_G0029990.1 mouse_genomes_project 5 119712596 119726898 - MGP_AJ_P0074038 Trafd1 protein_coding protein_coding MGP_AJ_T0074039.1 MGP_AJ_G0029990.1 mouse_genomes_project 5 119712598 119714341 - MGP_AJ_P0074039 Trafd1 protein_coding protein_coding MGP_AJ_T0074040.1 MGP_AJ_G0029990.1 mouse_genomes_project 5 119719436 119726224 - MGP_AJ_P0074040 Trafd1 protein_coding protein_coding MGP_AJ_T0074041.1 MGP_AJ_G0029990.1 mouse_genomes_project 5 119719682 119726904 - MGP_AJ_P0074041 Trafd1 protein_coding protein_coding MGP_AJ_T0074042.1 MGP_AJ_G0029990.1 mouse_genomes_project 5 119720401 119726956 - MGP_AJ_P0074042 Trafd1 protein_coding protein_coding MGP_AJ_T0074043.1 MGP_AJ_G0029990.1 mouse_genomes_project 5 119724970 119726175 - Trafd1 protein_coding processed_transcript MGP_AJ_T0001590.1 MGP_AJ_G0001507.1 mouse_genomes_project 5 49021857 49025400 - TEC TEC MGP_AJ_T0010721.1 MGP_AJ_G0008843.1 mouse_genomes_project 5 134671480 134671562 + Mir7035 miRNA miRNA MGP_AJ_T0001812.1 MGP_AJ_G0001727.1 mouse_genomes_project 5 121324985 121326567 - TEC TEC MGP_AJ_T0070755.1 MGP_AJ_G0029358.1 mouse_genomes_project 5 27603344 27642218 + MGP_AJ_P0070755 Kcnk3 protein_coding protein_coding MGP_AJ_T0070756.1 MGP_AJ_G0029358.1 mouse_genomes_project 5 27638319 27639179 + Kcnk3 protein_coding processed_transcript MGP_AJ_T0072482.1 MGP_AJ_G0029646.1 mouse_genomes_project 5 84336326 84364733 - MGP_AJ_P0072482 Ugt2b36 protein_coding protein_coding MGP_AJ_T0072483.1 MGP_AJ_G0029646.1 mouse_genomes_project 5 84336837 84364726 - MGP_AJ_P0072483 Ugt2b36 protein_coding protein_coding MGP_AJ_T0072484.1 MGP_AJ_G0029646.1 mouse_genomes_project 5 84336840 84363335 - Ugt2b36 protein_coding retained_intron MGP_AJ_T0072485.1 MGP_AJ_G0029646.1 mouse_genomes_project 5 84352862 84364724 - MGP_AJ_P0072485 Ugt2b36 protein_coding protein_coding MGP_AJ_T0071348.1 MGP_AJ_G0029445.1 mouse_genomes_project 5 32570764 32582260 + MGP_AJ_P0071348 Hmx1 protein_coding protein_coding MGP_AJ_T0071349.1 MGP_AJ_G0029445.1 mouse_genomes_project 5 32570773 32574546 + MGP_AJ_P0071349 Hmx1 protein_coding protein_coding MGP_AJ_T0004891.1 MGP_AJ_G0004202.1 mouse_genomes_project 5 148627413 148630729 - Gm43150 antisense antisense MGP_AJ_T0015094.1 MGP_AJ_G0013189.1 mouse_genomes_project 5 103603207 103604816 - processed_pseudogene processed_pseudogene MGP_AJ_T0015034.1 MGP_AJ_G0013129.1 mouse_genomes_project 5 74012047 74012488 - processed_pseudogene processed_pseudogene MGP_AJ_T0001839.1 MGP_AJ_G0001753.1 mouse_genomes_project 5 128396927 128400299 + TEC TEC MGP_AJ_T0101833.1 MGP_AJ_G0039733.1 mouse_genomes_project 5 112973758 112974378 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0071330.1 MGP_AJ_G0029441.1 mouse_genomes_project 5 32219885 32226803 + MGP_AJ_P0071330 Hgfac protein_coding protein_coding MGP_AJ_T0071331.1 MGP_AJ_G0029441.1 mouse_genomes_project 5 32219953 32226840 + Hgfac protein_coding retained_intron MGP_AJ_T0071332.1 MGP_AJ_G0029441.1 mouse_genomes_project 5 32219953 32222061 + MGP_AJ_P0071332 Hgfac protein_coding protein_coding MGP_AJ_T0071333.1 MGP_AJ_G0029441.1 mouse_genomes_project 5 32221985 32223825 + Hgfac protein_coding retained_intron MGP_AJ_T0071334.1 MGP_AJ_G0029441.1 mouse_genomes_project 5 32222727 32225342 + MGP_AJ_P0071334 Hgfac protein_coding protein_coding MGP_AJ_T0071335.1 MGP_AJ_G0029441.1 mouse_genomes_project 5 32223204 32224290 + Hgfac protein_coding retained_intron MGP_AJ_T0071336.1 MGP_AJ_G0029441.1 mouse_genomes_project 5 32224943 32226785 + Hgfac protein_coding retained_intron MGP_AJ_T0074350.1 MGP_AJ_G0030036.1 mouse_genomes_project 5 121943513 121945455 - MGP_AJ_P0074350 Il31 protein_coding protein_coding MGP_AJ_T0074351.1 MGP_AJ_G0030036.1 mouse_genomes_project 5 121943514 121945949 - MGP_AJ_P0074351 Il31 protein_coding protein_coding MGP_AJ_T0074352.1 MGP_AJ_G0030036.1 mouse_genomes_project 5 121943757 121952675 - MGP_AJ_P0074352 Il31 protein_coding protein_coding MGP_AJ_T0074353.1 MGP_AJ_G0030036.1 mouse_genomes_project 5 121945517 121945878 - Il31 protein_coding processed_transcript MGP_AJ_T0075159.1 MGP_AJ_G0030176.1 mouse_genomes_project 5 135304618 135452001 - MGP_AJ_P0075159 Col26a1 protein_coding protein_coding MGP_AJ_T0075160.1 MGP_AJ_G0030176.1 mouse_genomes_project 5 135304618 135452064 - MGP_AJ_P0075160 Col26a1 protein_coding protein_coding MGP_AJ_T0075161.1 MGP_AJ_G0030176.1 mouse_genomes_project 5 135305614 135307409 - Col26a1 protein_coding retained_intron MGP_AJ_T0075162.1 MGP_AJ_G0030176.1 mouse_genomes_project 5 135305933 135310561 - Col26a1 protein_coding retained_intron MGP_AJ_T0075163.1 MGP_AJ_G0030176.1 mouse_genomes_project 5 135317385 135451790 - Col26a1 protein_coding retained_intron MGP_AJ_T0075164.1 MGP_AJ_G0030176.1 mouse_genomes_project 5 135318104 135319251 - Col26a1 protein_coding retained_intron MGP_AJ_T0075165.1 MGP_AJ_G0030176.1 mouse_genomes_project 5 135321991 135452089 - Col26a1 protein_coding retained_intron MGP_AJ_T0075166.1 MGP_AJ_G0030176.1 mouse_genomes_project 5 135322165 135337079 - Col26a1 protein_coding processed_transcript MGP_AJ_T0075167.1 MGP_AJ_G0030176.1 mouse_genomes_project 5 135329551 135451623 - Col26a1 protein_coding processed_transcript MGP_AJ_T0075168.1 MGP_AJ_G0030176.1 mouse_genomes_project 5 135402572 135405027 - Col26a1 protein_coding retained_intron MGP_AJ_T0075169.1 MGP_AJ_G0030176.1 mouse_genomes_project 5 135403352 135451810 - Col26a1 protein_coding retained_intron MGP_AJ_T0074730.1 MGP_AJ_G0030102.1 mouse_genomes_project 5 128325853 128333411 - MGP_AJ_P0074730 Chchd2 protein_coding protein_coding MGP_AJ_T0070165.1 MGP_AJ_G0029239.1 mouse_genomes_project 5 2540896 2554092 - MGP_AJ_P0070165 Steap1 protein_coding protein_coding MGP_AJ_T0070166.1 MGP_AJ_G0029239.1 mouse_genomes_project 5 2540904 2544975 - MGP_AJ_P0070166 Steap1 protein_coding protein_coding MGP_AJ_T0070750.1 MGP_AJ_G0029356.1 mouse_genomes_project 5 27477266 27492215 + MGP_AJ_P0070750 1700001C02Rik protein_coding protein_coding MGP_AJ_T0070751.1 MGP_AJ_G0029356.1 mouse_genomes_project 5 27477274 27495417 + MGP_AJ_P0070751 1700001C02Rik protein_coding nonsense_mediated_decay MGP_AJ_T0070752.1 MGP_AJ_G0029356.1 mouse_genomes_project 5 27477278 27495461 + MGP_AJ_P0070752 1700001C02Rik protein_coding protein_coding MGP_AJ_T0070753.1 MGP_AJ_G0029356.1 mouse_genomes_project 5 27477303 27495440 + MGP_AJ_P0070753 1700001C02Rik protein_coding protein_coding MGP_AJ_T0004870.1 MGP_AJ_G0004187.1 mouse_genomes_project 5 138068434 138069322 - 4930520M14Rik antisense antisense MGP_AJ_T0004773.1 MGP_AJ_G0004121.1 mouse_genomes_project 5 110478568 110481839 - Gm20636 antisense antisense MGP_AJ_T0001723.1 MGP_AJ_G0001638.1 mouse_genomes_project 5 94558586 94559132 - TEC TEC MGP_AJ_T0010680.1 MGP_AJ_G0008802.1 mouse_genomes_project 5 61843645 61843762 - Gm25306 miRNA miRNA MGP_AJ_T0074912.1 MGP_AJ_G0030129.1 mouse_genomes_project 5 133139278 133160350 - MGP_AJ_P0074912 Eif4h protein_coding protein_coding MGP_AJ_T0074913.1 MGP_AJ_G0030129.1 mouse_genomes_project 5 133139435 133160207 - MGP_AJ_P0074913 Eif4h protein_coding protein_coding MGP_AJ_T0074914.1 MGP_AJ_G0030129.1 mouse_genomes_project 5 133143425 133160185 - Eif4h protein_coding retained_intron MGP_AJ_T0074915.1 MGP_AJ_G0030129.1 mouse_genomes_project 5 133144428 133160162 - Eif4h protein_coding retained_intron MGP_AJ_T0074916.1 MGP_AJ_G0030129.1 mouse_genomes_project 5 133158320 133160170 - Eif4h protein_coding retained_intron MGP_AJ_T0015218.1 MGP_AJ_G0013313.1 mouse_genomes_project 5 149227304 149228850 - processed_pseudogene processed_pseudogene MGP_AJ_T0071743.1 MGP_AJ_G0029515.1 mouse_genomes_project 5 49829544 49858875 - MGP_AJ_P0071743 Sepsecs protein_coding protein_coding MGP_AJ_T0071744.1 MGP_AJ_G0029515.1 mouse_genomes_project 5 49829544 49858875 - MGP_AJ_P0071744 Sepsecs protein_coding nonsense_mediated_decay MGP_AJ_T0071745.1 MGP_AJ_G0029515.1 mouse_genomes_project 5 49830633 49855167 - MGP_AJ_P0071745 Sepsecs protein_coding nonsense_mediated_decay MGP_AJ_T0071746.1 MGP_AJ_G0029515.1 mouse_genomes_project 5 49836094 49837969 - Sepsecs protein_coding retained_intron MGP_AJ_T0071747.1 MGP_AJ_G0029515.1 mouse_genomes_project 5 49845520 49858782 - MGP_AJ_P0071747 Sepsecs protein_coding nonsense_mediated_decay MGP_AJ_T0001739.1 MGP_AJ_G0001654.1 mouse_genomes_project 5 101759782 101762043 - TEC TEC MGP_AJ_T0075960.1 MGP_AJ_G0030349.1 mouse_genomes_project 5 145542848 145627078 + MGP_AJ_P0075960 Wasf3 protein_coding protein_coding MGP_AJ_T0015022.1 MGP_AJ_G0013117.1 mouse_genomes_project 5 69961600 69961910 + processed_pseudogene processed_pseudogene MGP_AJ_T0008117.1 MGP_AJ_G0006613.1 mouse_genomes_project 5 36446010 36498515 - Gm43453 lincRNA lincRNA MGP_AJ_T0074000.1 MGP_AJ_G0029980.1 mouse_genomes_project 5 119050656 119062945 - MGP_AJ_P0074000 Oas1c protein_coding protein_coding MGP_AJ_T0074001.1 MGP_AJ_G0029980.1 mouse_genomes_project 5 119053466 119062919 - MGP_AJ_P0074001 Oas1c protein_coding protein_coding MGP_AJ_T0074002.1 MGP_AJ_G0029980.1 mouse_genomes_project 5 119055862 119062945 - Oas1c protein_coding processed_transcript MGP_AJ_T0004859.1 MGP_AJ_G0004181.1 mouse_genomes_project 5 134686966 134687671 - Gm43604 antisense antisense MGP_AJ_T0001652.1 MGP_AJ_G0001568.1 mouse_genomes_project 5 63570527 63572551 - TEC TEC MGP_AJ_T0004704.1 MGP_AJ_G0004068.1 mouse_genomes_project 5 63392316 63416379 + Gm26725 antisense antisense MGP_AJ_T0010693.1 MGP_AJ_G0008815.1 mouse_genomes_project 5 90245962 90246074 - Mir1961 miRNA miRNA MGP_AJ_T0070380.1 MGP_AJ_G0029283.1 mouse_genomes_project 5 18420220 18584275 - MGP_AJ_P0070380 Fbxl13 protein_coding protein_coding MGP_AJ_T0070381.1 MGP_AJ_G0029283.1 mouse_genomes_project 5 18426573 18584257 - Fbxl13 protein_coding retained_intron MGP_AJ_T0070382.1 MGP_AJ_G0029283.1 mouse_genomes_project 5 18456820 18584225 - MGP_AJ_P0070382 Fbxl13 protein_coding protein_coding MGP_AJ_T0070385.1 MGP_AJ_G0029283.1 mouse_genomes_project 5 18520159 18524275 - Fbxl13 protein_coding processed_transcript MGP_AJ_T0070386.1 MGP_AJ_G0029283.1 mouse_genomes_project 5 18582219 18584304 - Fbxl13 protein_coding retained_intron MGP_AJ_T0001870.1 MGP_AJ_G0001784.1 mouse_genomes_project 5 131272752 131273040 + TEC TEC MGP_AJ_T0075877.1 MGP_AJ_G0030325.1 mouse_genomes_project 5 144071091 144086497 + MGP_AJ_P0075877 Arpc1b protein_coding protein_coding MGP_AJ_T0075878.1 MGP_AJ_G0030325.1 mouse_genomes_project 5 144071134 144079868 + Arpc1b protein_coding processed_transcript MGP_AJ_T0075879.1 MGP_AJ_G0030325.1 mouse_genomes_project 5 144071177 144081328 + Arpc1b protein_coding retained_intron MGP_AJ_T0075880.1 MGP_AJ_G0030325.1 mouse_genomes_project 5 144071188 144085019 + MGP_AJ_P0075880 Arpc1b protein_coding protein_coding MGP_AJ_T0075881.1 MGP_AJ_G0030325.1 mouse_genomes_project 5 144071192 144079708 + MGP_AJ_P0075881 Arpc1b protein_coding protein_coding MGP_AJ_T0075882.1 MGP_AJ_G0030325.1 mouse_genomes_project 5 144080751 144083859 + MGP_AJ_P0075882 Arpc1b protein_coding protein_coding MGP_AJ_T0075883.1 MGP_AJ_G0030325.1 mouse_genomes_project 5 144081046 144082779 + Arpc1b protein_coding retained_intron MGP_AJ_T0075884.1 MGP_AJ_G0030325.1 mouse_genomes_project 5 144081046 144084005 + Arpc1b protein_coding processed_transcript MGP_AJ_T0075885.1 MGP_AJ_G0030325.1 mouse_genomes_project 5 144082963 144084403 + Arpc1b protein_coding retained_intron MGP_AJ_T0075886.1 MGP_AJ_G0030325.1 mouse_genomes_project 5 144083830 144087504 + MGP_AJ_P0075886 Arpc1b protein_coding protein_coding MGP_AJ_T0075887.1 MGP_AJ_G0030325.1 mouse_genomes_project 5 144084295 144085019 + Arpc1b protein_coding retained_intron MGP_AJ_T0008381.1 MGP_AJ_G0006804.1 mouse_genomes_project 5 124402108 124426791 + Gm42952 lincRNA lincRNA MGP_AJ_T0008382.1 MGP_AJ_G0006804.1 mouse_genomes_project 5 124405736 124426992 + Gm42952 lincRNA lincRNA MGP_AJ_T0008383.1 MGP_AJ_G0006804.1 mouse_genomes_project 5 124405748 124420386 + Gm42952 lincRNA lincRNA MGP_AJ_T0008384.1 MGP_AJ_G0006804.1 mouse_genomes_project 5 124405753 124419040 + Gm42952 lincRNA lincRNA MGP_AJ_T0008385.1 MGP_AJ_G0006804.1 mouse_genomes_project 5 124405758 124426935 + Gm42952 lincRNA lincRNA MGP_AJ_T0008386.1 MGP_AJ_G0006804.1 mouse_genomes_project 5 124405772 124420017 + Gm42952 lincRNA lincRNA MGP_AJ_T0071355.1 MGP_AJ_G0029448.1 mouse_genomes_project 5 32763846 32794551 + MGP_AJ_P0071355 Acox3 protein_coding protein_coding MGP_AJ_T0071356.1 MGP_AJ_G0029448.1 mouse_genomes_project 5 32763857 32793357 + MGP_AJ_P0071356 Acox3 protein_coding protein_coding MGP_AJ_T0071357.1 MGP_AJ_G0029448.1 mouse_genomes_project 5 32763884 32769512 + MGP_AJ_P0071357 Acox3 protein_coding protein_coding MGP_AJ_T0071358.1 MGP_AJ_G0029448.1 mouse_genomes_project 5 32763885 32796110 + MGP_AJ_P0071358 Acox3 protein_coding protein_coding MGP_AJ_T0071359.1 MGP_AJ_G0029448.1 mouse_genomes_project 5 32763898 32768207 + Acox3 protein_coding retained_intron MGP_AJ_T0071360.1 MGP_AJ_G0029448.1 mouse_genomes_project 5 32763908 32792626 + MGP_AJ_P0071360 Acox3 protein_coding protein_coding MGP_AJ_T0071361.1 MGP_AJ_G0029448.1 mouse_genomes_project 5 32764329 32792619 + MGP_AJ_P0071361 Acox3 protein_coding protein_coding MGP_AJ_T0071362.1 MGP_AJ_G0029448.1 mouse_genomes_project 5 32782363 32789085 + MGP_AJ_P0071362 Acox3 protein_coding protein_coding MGP_AJ_T0071363.1 MGP_AJ_G0029448.1 mouse_genomes_project 5 32787692 32790670 + Acox3 protein_coding retained_intron MGP_AJ_T0071364.1 MGP_AJ_G0029448.1 mouse_genomes_project 5 32790849 32792637 + Acox3 protein_coding retained_intron MGP_AJ_T0070457.1 MGP_AJ_G0029297.1 mouse_genomes_project 5 20706179 20748957 - MGP_AJ_P0070457 Pus7 protein_coding protein_coding MGP_AJ_T0070458.1 MGP_AJ_G0029297.1 mouse_genomes_project 5 20706180 20748799 - MGP_AJ_P0070458 Pus7 protein_coding protein_coding MGP_AJ_T0070459.1 MGP_AJ_G0029297.1 mouse_genomes_project 5 20706187 20744835 - MGP_AJ_P0070459 Pus7 protein_coding protein_coding MGP_AJ_T0070460.1 MGP_AJ_G0029297.1 mouse_genomes_project 5 20707896 20715644 - Pus7 protein_coding processed_transcript MGP_AJ_T0070461.1 MGP_AJ_G0029297.1 mouse_genomes_project 5 20708953 20727812 - MGP_AJ_P0070461 Pus7 protein_coding nonsense_mediated_decay MGP_AJ_T0070462.1 MGP_AJ_G0029297.1 mouse_genomes_project 5 20714909 20727849 - Pus7 protein_coding processed_transcript MGP_AJ_T0070463.1 MGP_AJ_G0029297.1 mouse_genomes_project 5 20716062 20720118 - Pus7 protein_coding processed_transcript MGP_AJ_T0070464.1 MGP_AJ_G0029297.1 mouse_genomes_project 5 20725803 20743653 - MGP_AJ_P0070464 Pus7 protein_coding nonsense_mediated_decay MGP_AJ_T0070465.1 MGP_AJ_G0029297.1 mouse_genomes_project 5 20737825 20740943 - Pus7 protein_coding retained_intron MGP_AJ_T0073905.1 MGP_AJ_G0029957.1 mouse_genomes_project 5 116257891 116349608 - MGP_AJ_P0073905 Fbxw8 protein_coding protein_coding MGP_AJ_T0073906.1 MGP_AJ_G0029957.1 mouse_genomes_project 5 116269981 116349570 - Fbxw8 protein_coding retained_intron MGP_AJ_T0072322.1 MGP_AJ_G0029615.1 mouse_genomes_project 5 73925000 73926849 + MGP_AJ_P0072322 C530008M17Rik protein_coding protein_coding MGP_AJ_T0072323.1 MGP_AJ_G0029615.1 mouse_genomes_project 5 73926176 74112535 + MGP_AJ_P0072323 C530008M17Rik protein_coding protein_coding MGP_AJ_T0072324.1 MGP_AJ_G0029615.1 mouse_genomes_project 5 73926178 73927604 + C530008M17Rik protein_coding processed_transcript MGP_AJ_T0072325.1 MGP_AJ_G0029615.1 mouse_genomes_project 5 73926214 74059905 + C530008M17Rik protein_coding processed_transcript MGP_AJ_T0072326.1 MGP_AJ_G0029615.1 mouse_genomes_project 5 74022344 74145064 + MGP_AJ_P0072326 C530008M17Rik protein_coding protein_coding MGP_AJ_T0072327.1 MGP_AJ_G0029615.1 mouse_genomes_project 5 74081307 74114243 + MGP_AJ_P0072327 C530008M17Rik protein_coding protein_coding MGP_AJ_T0072328.1 MGP_AJ_G0029615.1 mouse_genomes_project 5 74112252 74145279 + MGP_AJ_P0072328 C530008M17Rik protein_coding protein_coding MGP_AJ_T0072329.1 MGP_AJ_G0029615.1 mouse_genomes_project 5 74112252 74145288 + MGP_AJ_P0072329 C530008M17Rik protein_coding protein_coding MGP_AJ_T0072330.1 MGP_AJ_G0029615.1 mouse_genomes_project 5 74112272 74114245 + MGP_AJ_P0072330 C530008M17Rik protein_coding protein_coding MGP_AJ_T0072331.1 MGP_AJ_G0029615.1 mouse_genomes_project 5 74130544 74138208 + C530008M17Rik protein_coding retained_intron MGP_AJ_T0072332.1 MGP_AJ_G0029615.1 mouse_genomes_project 5 74137810 74140134 + MGP_AJ_P0072332 C530008M17Rik protein_coding protein_coding MGP_AJ_T0072333.1 MGP_AJ_G0029615.1 mouse_genomes_project 5 74140902 74142409 + C530008M17Rik protein_coding processed_transcript MGP_AJ_T0008176.1 MGP_AJ_G0006661.1 mouse_genomes_project 5 71349401 71351747 + Dancr lincRNA lincRNA MGP_AJ_T0008177.1 MGP_AJ_G0006661.1 mouse_genomes_project 5 71349401 71351746 + Dancr lincRNA lincRNA MGP_AJ_T0015172.1 MGP_AJ_G0013267.1 mouse_genomes_project 5 136508383 136509125 + processed_pseudogene processed_pseudogene MGP_AJ_T0001759.1 MGP_AJ_G0001674.1 mouse_genomes_project 5 110471407 110472668 + TEC TEC MGP_AJ_T0070354.1 MGP_AJ_G0029278.1 mouse_genomes_project 5 17928584 17998784 - MGP_AJ_P0070354 Ptpn12 protein_coding protein_coding MGP_AJ_T0070355.1 MGP_AJ_G0029278.1 mouse_genomes_project 5 17940193 17943426 - Ptpn12 protein_coding retained_intron MGP_AJ_T0070356.1 MGP_AJ_G0029278.1 mouse_genomes_project 5 17940367 17951620 - Ptpn12 protein_coding retained_intron MGP_AJ_T0070357.1 MGP_AJ_G0029278.1 mouse_genomes_project 5 17943302 17998626 - MGP_AJ_P0070357 Ptpn12 protein_coding nonsense_mediated_decay MGP_AJ_T0070358.1 MGP_AJ_G0029278.1 mouse_genomes_project 5 17947375 17998770 - MGP_AJ_P0070358 Ptpn12 protein_coding nonsense_mediated_decay MGP_AJ_T0070359.1 MGP_AJ_G0029278.1 mouse_genomes_project 5 17951457 17998598 - MGP_AJ_P0070359 Ptpn12 protein_coding nonsense_mediated_decay MGP_AJ_T0008221.1 MGP_AJ_G0006700.1 mouse_genomes_project 5 94849116 94861428 + Gm2861 lincRNA lincRNA MGP_AJ_T0004675.1 MGP_AJ_G0004047.1 mouse_genomes_project 5 34221279 34224762 - Gm26647 antisense antisense MGP_AJ_T0004744.1 MGP_AJ_G0004099.1 mouse_genomes_project 5 97299444 97300671 + 4930405H06Rik antisense antisense MGP_AJ_T0071302.1 MGP_AJ_G0029438.1 mouse_genomes_project 5 31924699 31988150 + Htt protein_coding retained_intron MGP_AJ_T0071303.1 MGP_AJ_G0029438.1 mouse_genomes_project 5 31924703 32084539 + MGP_AJ_P0071303 Htt protein_coding protein_coding MGP_AJ_T0071304.1 MGP_AJ_G0029438.1 mouse_genomes_project 5 31924720 31977777 + Htt protein_coding retained_intron MGP_AJ_T0071305.1 MGP_AJ_G0029438.1 mouse_genomes_project 5 31958847 31961461 + Htt protein_coding retained_intron MGP_AJ_T0071306.1 MGP_AJ_G0029438.1 mouse_genomes_project 5 31969795 31974861 + Htt protein_coding retained_intron MGP_AJ_T0071307.1 MGP_AJ_G0029438.1 mouse_genomes_project 5 31973076 31975347 + Htt protein_coding retained_intron MGP_AJ_T0071308.1 MGP_AJ_G0029438.1 mouse_genomes_project 5 32046076 32053863 + Htt protein_coding retained_intron MGP_AJ_T0071309.1 MGP_AJ_G0029438.1 mouse_genomes_project 5 32055335 32072607 + Htt protein_coding retained_intron MGP_AJ_T0008070.1 MGP_AJ_G0006584.1 mouse_genomes_project 5 20816095 20820731 + 2700038G22Rik lincRNA lincRNA MGP_AJ_T0071352.1 MGP_AJ_G0029447.1 mouse_genomes_project 5 32738286 32755876 - MGP_AJ_P0071352 Trmt44 protein_coding protein_coding MGP_AJ_T0071353.1 MGP_AJ_G0029447.1 mouse_genomes_project 5 32753297 32755857 - Trmt44 protein_coding retained_intron MGP_AJ_T0071354.1 MGP_AJ_G0029447.1 mouse_genomes_project 5 32753549 32755544 - MGP_AJ_P0071354 Trmt44 protein_coding protein_coding MGP_AJ_T0015071.1 MGP_AJ_G0013166.1 mouse_genomes_project 5 89833771 89835379 + processed_pseudogene processed_pseudogene MGP_AJ_T0008161.1 MGP_AJ_G0006650.1 mouse_genomes_project 5 61789272 61806120 - Gm3716 lincRNA lincRNA MGP_AJ_T0008162.1 MGP_AJ_G0006650.1 mouse_genomes_project 5 61790643 61798568 - Gm3716 lincRNA lincRNA MGP_AJ_T0073735.1 MGP_AJ_G0029928.1 mouse_genomes_project 5 113444833 113462416 + MGP_AJ_P0073735 Coq5 protein_coding protein_coding MGP_AJ_T0073736.1 MGP_AJ_G0029928.1 mouse_genomes_project 5 113444862 113446082 + Coq5 protein_coding retained_intron MGP_AJ_T0073737.1 MGP_AJ_G0029928.1 mouse_genomes_project 5 113448962 113461753 + MGP_AJ_P0073737 Coq5 protein_coding nonsense_mediated_decay MGP_AJ_T0001436.1 MGP_AJ_G0001357.1 mouse_genomes_project 5 447977 451601 - TEC TEC MGP_AJ_T0073410.1 MGP_AJ_G0029862.1 mouse_genomes_project 5 108974130 109379704 + MGP_AJ_P0073410 Ttc28 protein_coding protein_coding MGP_AJ_T0073411.1 MGP_AJ_G0029862.1 mouse_genomes_project 5 108974130 109379703 + MGP_AJ_P0073411 Ttc28 protein_coding protein_coding MGP_AJ_T0073412.1 MGP_AJ_G0029862.1 mouse_genomes_project 5 108974149 109009953 + Ttc28 protein_coding processed_transcript MGP_AJ_T0073413.1 MGP_AJ_G0029862.1 mouse_genomes_project 5 109314201 109318121 + Ttc28 protein_coding retained_intron MGP_AJ_T0073414.1 MGP_AJ_G0029862.1 mouse_genomes_project 5 109321974 109326955 + Ttc28 protein_coding processed_transcript MGP_AJ_T0073415.1 MGP_AJ_G0029862.1 mouse_genomes_project 5 109323805 109356372 + Ttc28 protein_coding retained_intron MGP_AJ_T0004658.1 MGP_AJ_G0004031.1 mouse_genomes_project 5 28162099 28163683 - Gm15469 antisense antisense MGP_AJ_T0001591.1 MGP_AJ_G0001508.1 mouse_genomes_project 5 49042103 49046253 - TEC TEC MGP_AJ_T0001843.1 MGP_AJ_G0001757.1 mouse_genomes_project 5 129082035 129082463 - TEC TEC MGP_AJ_T0070973.1 MGP_AJ_G0029389.1 mouse_genomes_project 5 28324381 28328076 - MGP_AJ_P0070973 Fndc4 protein_coding protein_coding MGP_AJ_T0070974.1 MGP_AJ_G0029389.1 mouse_genomes_project 5 28325025 28328011 - MGP_AJ_P0070974 Fndc4 protein_coding protein_coding MGP_AJ_T0070975.1 MGP_AJ_G0029389.1 mouse_genomes_project 5 28325025 28325853 - MGP_AJ_P0070975 Fndc4 protein_coding nonsense_mediated_decay MGP_AJ_T0070976.1 MGP_AJ_G0029389.1 mouse_genomes_project 5 28325411 28326106 - Fndc4 protein_coding retained_intron MGP_AJ_T0070977.1 MGP_AJ_G0029389.1 mouse_genomes_project 5 28325825 28327573 - MGP_AJ_P0070977 Fndc4 protein_coding protein_coding MGP_AJ_T0070978.1 MGP_AJ_G0029389.1 mouse_genomes_project 5 28326225 28327399 - Fndc4 protein_coding retained_intron MGP_AJ_T0070979.1 MGP_AJ_G0029389.1 mouse_genomes_project 5 28326854 28328220 - MGP_AJ_P0070979 Fndc4 protein_coding protein_coding MGP_AJ_T0004676.1 MGP_AJ_G0004048.1 mouse_genomes_project 5 35501413 35504978 - Gm26560 antisense antisense MGP_AJ_T0008297.1 MGP_AJ_G0006748.1 mouse_genomes_project 5 109834889 109840239 + Gm16019 lincRNA lincRNA MGP_AJ_T0076158.1 MGP_AJ_G0030384.1 mouse_genomes_project 5 149805784 149828598 - MGP_AJ_P0076158 N4bp2l1 protein_coding protein_coding MGP_AJ_T0076159.1 MGP_AJ_G0030384.1 mouse_genomes_project 5 149805787 149811124 - MGP_AJ_P0076159 N4bp2l1 protein_coding protein_coding MGP_AJ_T0076160.1 MGP_AJ_G0030384.1 mouse_genomes_project 5 149806805 149828535 - MGP_AJ_P0076160 N4bp2l1 protein_coding nonsense_mediated_decay MGP_AJ_T0076161.1 MGP_AJ_G0030384.1 mouse_genomes_project 5 149808140 149831261 - MGP_AJ_P0076161 N4bp2l1 protein_coding protein_coding MGP_AJ_T0076162.1 MGP_AJ_G0030384.1 mouse_genomes_project 5 149825824 149828601 - MGP_AJ_P0076162 N4bp2l1 protein_coding nonsense_mediated_decay MGP_AJ_T0076163.1 MGP_AJ_G0030384.1 mouse_genomes_project 5 149825827 149828573 - MGP_AJ_P0076163 N4bp2l1 protein_coding nonsense_mediated_decay MGP_AJ_T0076164.1 MGP_AJ_G0030384.1 mouse_genomes_project 5 149826515 149827842 - N4bp2l1 protein_coding retained_intron MGP_AJ_T0074160.1 MGP_AJ_G0030008.1 mouse_genomes_project 5 120575173 120594320 + MGP_AJ_P0074160 Ppp1cc protein_coding protein_coding MGP_AJ_T0074161.1 MGP_AJ_G0030008.1 mouse_genomes_project 5 120575251 120594320 + MGP_AJ_P0074161 Ppp1cc protein_coding protein_coding MGP_AJ_T0074162.1 MGP_AJ_G0030008.1 mouse_genomes_project 5 120575251 120594316 + MGP_AJ_P0074162 Ppp1cc protein_coding nonsense_mediated_decay MGP_AJ_T0074163.1 MGP_AJ_G0030008.1 mouse_genomes_project 5 120575251 120594320 + MGP_AJ_P0074163 Ppp1cc protein_coding nonsense_mediated_decay MGP_AJ_T0074164.1 MGP_AJ_G0030008.1 mouse_genomes_project 5 120575488 120594143 + MGP_AJ_P0074164 Ppp1cc protein_coding protein_coding MGP_AJ_T0074165.1 MGP_AJ_G0030008.1 mouse_genomes_project 5 120575852 120586956 + Ppp1cc protein_coding retained_intron MGP_AJ_T0074166.1 MGP_AJ_G0030008.1 mouse_genomes_project 5 120586157 120594312 + MGP_AJ_P0074166 Ppp1cc protein_coding nonsense_mediated_decay MGP_AJ_T0074167.1 MGP_AJ_G0030008.1 mouse_genomes_project 5 120588870 120590059 + Ppp1cc protein_coding retained_intron MGP_AJ_T0074168.1 MGP_AJ_G0030008.1 mouse_genomes_project 5 120589145 120594312 + MGP_AJ_P0074168 Ppp1cc protein_coding nonsense_mediated_decay MGP_AJ_T0074169.1 MGP_AJ_G0030008.1 mouse_genomes_project 5 120589930 120593722 + MGP_AJ_P0074169 Ppp1cc protein_coding nonsense_mediated_decay MGP_AJ_T0001901.1 MGP_AJ_G0001814.1 mouse_genomes_project 5 146599425 146600472 + TEC TEC MGP_AJ_T0015173.1 MGP_AJ_G0013268.1 mouse_genomes_project 5 136605631 136606131 + processed_pseudogene processed_pseudogene MGP_AJ_T0071122.1 MGP_AJ_G0029413.1 mouse_genomes_project 5 30576410 30579653 - MGP_AJ_P0071122 Nkx1-1 protein_coding protein_coding MGP_AJ_T0001470.1 MGP_AJ_G0001391.1 mouse_genomes_project 5 17973780 17975113 + TEC TEC MGP_AJ_T0015157.1 MGP_AJ_G0013252.1 mouse_genomes_project 5 132412869 132413713 - processed_pseudogene processed_pseudogene MGP_AJ_T0072467.1 MGP_AJ_G0029641.1 mouse_genomes_project 5 83968124 84008956 - MGP_AJ_P0072467 Tmprss11e protein_coding protein_coding MGP_AJ_T0070447.1 MGP_AJ_G0029296.1 mouse_genomes_project 5 20477996 20585124 - MGP_AJ_P0070447 Srpk2 protein_coding protein_coding MGP_AJ_T0070448.1 MGP_AJ_G0029296.1 mouse_genomes_project 5 20480184 20644798 - MGP_AJ_P0070448 Srpk2 protein_coding nonsense_mediated_decay MGP_AJ_T0070449.1 MGP_AJ_G0029296.1 mouse_genomes_project 5 20499902 20516316 - Srpk2 protein_coding processed_transcript MGP_AJ_T0070450.1 MGP_AJ_G0029296.1 mouse_genomes_project 5 20502118 20644364 - MGP_AJ_P0070450 Srpk2 protein_coding protein_coding MGP_AJ_T0070451.1 MGP_AJ_G0029296.1 mouse_genomes_project 5 20518337 20644317 - Srpk2 protein_coding retained_intron MGP_AJ_T0070452.1 MGP_AJ_G0029296.1 mouse_genomes_project 5 20520756 20523442 - Srpk2 protein_coding retained_intron MGP_AJ_T0070453.1 MGP_AJ_G0029296.1 mouse_genomes_project 5 20521154 20653723 - MGP_AJ_P0070453 Srpk2 protein_coding protein_coding MGP_AJ_T0070454.1 MGP_AJ_G0029296.1 mouse_genomes_project 5 20539027 20644705 - MGP_AJ_P0070454 Srpk2 protein_coding protein_coding MGP_AJ_T0070455.1 MGP_AJ_G0029296.1 mouse_genomes_project 5 20539132 20653706 - MGP_AJ_P0070455 Srpk2 protein_coding protein_coding MGP_AJ_T0070456.1 MGP_AJ_G0029296.1 mouse_genomes_project 5 20583319 20585145 - Srpk2 protein_coding retained_intron MGP_AJ_T0099055.1 MGP_AJ_G0037032.1 mouse_genomes_project 5 128216030 128217371 + Gm15903 sense_intronic sense_intronic MGP_AJ_T0099056.1 MGP_AJ_G0037032.1 mouse_genomes_project 5 128217157 128220687 + Gm15903 sense_intronic sense_intronic MGP_AJ_T0001467.1 MGP_AJ_G0001388.1 mouse_genomes_project 5 13536945 13538436 + TEC TEC MGP_AJ_T0001565.1 MGP_AJ_G0001483.1 mouse_genomes_project 5 46087995 46091782 - TEC TEC MGP_AJ_T0001566.1 MGP_AJ_G0001483.1 mouse_genomes_project 5 46090902 46091276 - TEC pseudogene MGP_AJ_T0001600.1 MGP_AJ_G0001517.1 mouse_genomes_project 5 51136679 51138450 + TEC TEC MGP_AJ_T0070312.1 MGP_AJ_G0029266.1 mouse_genomes_project 5 14299684 14308703 + MGP_AJ_P0070312 protein_coding protein_coding MGP_AJ_T0001780.1 MGP_AJ_G0001695.1 mouse_genomes_project 5 114687650 114688986 - TEC TEC MGP_AJ_T0070517.1 MGP_AJ_G0029309.1 mouse_genomes_project 5 21396588 21400424 + MGP_AJ_P0070517 Slc4a2 protein_coding protein_coding MGP_AJ_T0070518.1 MGP_AJ_G0029309.1 mouse_genomes_project 5 21396604 21402961 + Slc4a2 protein_coding processed_transcript MGP_AJ_T0070519.1 MGP_AJ_G0029309.1 mouse_genomes_project 5 21396610 21402694 + MGP_AJ_P0070519 Slc4a2 protein_coding protein_coding MGP_AJ_T0070520.1 MGP_AJ_G0029309.1 mouse_genomes_project 5 21397983 21413762 + MGP_AJ_P0070520 Slc4a2 protein_coding protein_coding MGP_AJ_T0070521.1 MGP_AJ_G0029309.1 mouse_genomes_project 5 21398036 21400515 + Slc4a2 protein_coding processed_transcript MGP_AJ_T0070522.1 MGP_AJ_G0029309.1 mouse_genomes_project 5 21399642 21402664 + MGP_AJ_P0070522 Slc4a2 protein_coding protein_coding MGP_AJ_T0070523.1 MGP_AJ_G0029309.1 mouse_genomes_project 5 21401019 21413759 + MGP_AJ_P0070523 Slc4a2 protein_coding protein_coding MGP_AJ_T0070524.1 MGP_AJ_G0029309.1 mouse_genomes_project 5 21401074 21402650 + Slc4a2 protein_coding processed_transcript MGP_AJ_T0070525.1 MGP_AJ_G0029309.1 mouse_genomes_project 5 21401234 21413759 + MGP_AJ_P0070525 Slc4a2 protein_coding protein_coding MGP_AJ_T0070526.1 MGP_AJ_G0029309.1 mouse_genomes_project 5 21401829 21402591 + Slc4a2 protein_coding retained_intron MGP_AJ_T0070527.1 MGP_AJ_G0029309.1 mouse_genomes_project 5 21404147 21407164 + Slc4a2 protein_coding retained_intron MGP_AJ_T0070528.1 MGP_AJ_G0029309.1 mouse_genomes_project 5 21408356 21409299 + Slc4a2 protein_coding retained_intron MGP_AJ_T0070529.1 MGP_AJ_G0029309.1 mouse_genomes_project 5 21409571 21412068 + Slc4a2 protein_coding retained_intron MGP_AJ_T0070532.1 MGP_AJ_G0029309.1 mouse_genomes_project 5 21412557 21413384 + Slc4a2 protein_coding retained_intron MGP_AJ_T0071971.1 MGP_AJ_G0029555.1 mouse_genomes_project 5 63256979 63339839 - MGP_AJ_P0071971 Rbm47 protein_coding protein_coding MGP_AJ_T0071972.1 MGP_AJ_G0029555.1 mouse_genomes_project 5 63256979 63414520 - MGP_AJ_P0071972 Rbm47 protein_coding protein_coding MGP_AJ_T0071973.1 MGP_AJ_G0029555.1 mouse_genomes_project 5 63256986 63322347 - MGP_AJ_P0071973 Rbm47 protein_coding protein_coding MGP_AJ_T0071974.1 MGP_AJ_G0029555.1 mouse_genomes_project 5 63256987 63393030 - MGP_AJ_P0071974 Rbm47 protein_coding protein_coding MGP_AJ_T0071975.1 MGP_AJ_G0029555.1 mouse_genomes_project 5 63259143 63392184 - MGP_AJ_P0071975 Rbm47 protein_coding protein_coding MGP_AJ_T0071976.1 MGP_AJ_G0029555.1 mouse_genomes_project 5 63259143 63392184 - MGP_AJ_P0071976 Rbm47 protein_coding protein_coding MGP_AJ_T0071977.1 MGP_AJ_G0029555.1 mouse_genomes_project 5 63259551 63322446 - MGP_AJ_P0071977 Rbm47 protein_coding protein_coding MGP_AJ_T0071978.1 MGP_AJ_G0029555.1 mouse_genomes_project 5 63266293 63392062 - Rbm47 protein_coding retained_intron MGP_AJ_T0071979.1 MGP_AJ_G0029555.1 mouse_genomes_project 5 63267525 63295321 - MGP_AJ_P0071979 Rbm47 protein_coding protein_coding MGP_AJ_T0071980.1 MGP_AJ_G0029555.1 mouse_genomes_project 5 63267768 63323337 - Rbm47 protein_coding processed_transcript MGP_AJ_T0071981.1 MGP_AJ_G0029555.1 mouse_genomes_project 5 63267960 63322331 - MGP_AJ_P0071981 Rbm47 protein_coding protein_coding MGP_AJ_T0071982.1 MGP_AJ_G0029555.1 mouse_genomes_project 5 63267980 63392428 - MGP_AJ_P0071982 Rbm47 protein_coding protein_coding MGP_AJ_T0071983.1 MGP_AJ_G0029555.1 mouse_genomes_project 5 63286942 63392894 - Rbm47 protein_coding processed_transcript MGP_AJ_T0071984.1 MGP_AJ_G0029555.1 mouse_genomes_project 5 63287057 63392888 - Rbm47 protein_coding processed_transcript MGP_AJ_T0001715.1 MGP_AJ_G0001630.1 mouse_genomes_project 5 89415832 89416792 - TEC TEC MGP_AJ_T0004789.1 MGP_AJ_G0004131.1 mouse_genomes_project 5 114191009 114197483 + Gm14508 antisense antisense MGP_AJ_T0001633.1 MGP_AJ_G0001549.1 mouse_genomes_project 5 62650997 62652472 - TEC TEC MGP_AJ_T0001662.1 MGP_AJ_G0001578.1 mouse_genomes_project 5 64231632 64233789 + TEC TEC MGP_AJ_T0004751.1 MGP_AJ_G0004103.1 mouse_genomes_project 5 97753994 97774202 + Tmem150cos antisense antisense MGP_AJ_T0004752.1 MGP_AJ_G0004103.1 mouse_genomes_project 5 97770952 97774326 + Tmem150cos antisense antisense MGP_AJ_T0008411.1 MGP_AJ_G0006819.1 mouse_genomes_project 5 127851807 127852967 + Gm43001 lincRNA lincRNA MGP_AJ_T0008412.1 MGP_AJ_G0006819.1 mouse_genomes_project 5 127852365 127852878 + Gm43001 lincRNA lincRNA MGP_AJ_T0014984.1 MGP_AJ_G0013079.1 mouse_genomes_project 5 54411337 54412687 + processed_pseudogene processed_pseudogene MGP_AJ_T0074551.1 MGP_AJ_G0030067.1 mouse_genomes_project 5 123052551 123074107 + MGP_AJ_P0074551 Gtf2h3 protein_coding protein_coding MGP_AJ_T0074552.1 MGP_AJ_G0030067.1 mouse_genomes_project 5 123052553 123055085 + Gtf2h3 protein_coding retained_intron MGP_AJ_T0074553.1 MGP_AJ_G0030067.1 mouse_genomes_project 5 123052577 123068954 + Gtf2h3 protein_coding retained_intron MGP_AJ_T0074554.1 MGP_AJ_G0030067.1 mouse_genomes_project 5 123057266 123071898 + Gtf2h3 protein_coding retained_intron MGP_AJ_T0074555.1 MGP_AJ_G0030067.1 mouse_genomes_project 5 123066705 123072883 + Gtf2h3 protein_coding retained_intron MGP_AJ_T0074556.1 MGP_AJ_G0030067.1 mouse_genomes_project 5 123070589 123071907 + Gtf2h3 protein_coding retained_intron MGP_AJ_T0102124.1 MGP_AJ_G0039877.1 mouse_genomes_project 5 89420204 89424278 + unitary_pseudogene retained_intron MGP_AJ_T0102125.1 MGP_AJ_G0039877.1 mouse_genomes_project 5 89420705 89427330 + unitary_pseudogene processed_transcript MGP_AJ_T0102126.1 MGP_AJ_G0039877.1 mouse_genomes_project 5 89420719 89428249 + unitary_pseudogene processed_transcript MGP_AJ_T0102127.1 MGP_AJ_G0039877.1 mouse_genomes_project 5 89421148 89429730 + unitary_pseudogene unitary_pseudogene MGP_AJ_T0070490.1 MGP_AJ_G0029303.1 mouse_genomes_project 5 21289769 21321778 - MGP_AJ_P0070490 Kcnh2 protein_coding protein_coding MGP_AJ_T0070491.1 MGP_AJ_G0029303.1 mouse_genomes_project 5 21289769 21299754 - MGP_AJ_P0070491 Kcnh2 protein_coding protein_coding MGP_AJ_T0070492.1 MGP_AJ_G0029303.1 mouse_genomes_project 5 21290263 21292435 - Kcnh2 protein_coding processed_transcript MGP_AJ_T0070493.1 MGP_AJ_G0029303.1 mouse_genomes_project 5 21294670 21295970 - Kcnh2 protein_coding processed_transcript MGP_AJ_T0070494.1 MGP_AJ_G0029303.1 mouse_genomes_project 5 21295628 21296700 - Kcnh2 protein_coding processed_transcript MGP_AJ_T0004640.1 MGP_AJ_G0004017.1 mouse_genomes_project 5 16119205 16143245 - 4921504A21Rik antisense antisense MGP_AJ_T0004641.1 MGP_AJ_G0004017.1 mouse_genomes_project 5 16120130 16142858 - 4921504A21Rik antisense antisense MGP_AJ_T0008451.1 MGP_AJ_G0006852.1 mouse_genomes_project 5 146448991 146449535 + Gm27033 lincRNA lincRNA MGP_AJ_T0004665.1 MGP_AJ_G0004037.1 mouse_genomes_project 5 31271377 31287861 + 4930557J02Rik antisense antisense MGP_AJ_T0014847.1 MGP_AJ_G0012942.1 mouse_genomes_project 5 3164966 3165321 + processed_pseudogene processed_pseudogene MGP_AJ_T0015181.1 MGP_AJ_G0013276.1 mouse_genomes_project 5 139335251 139335725 - processed_pseudogene processed_pseudogene MGP_AJ_T0014914.1 MGP_AJ_G0013009.1 mouse_genomes_project 5 23368867 23370680 + processed_pseudogene processed_pseudogene MGP_AJ_T0070672.1 MGP_AJ_G0029340.1 mouse_genomes_project 5 26232727 26386384 - MGP_AJ_P0070672 Lmbr1 protein_coding protein_coding MGP_AJ_T0070673.1 MGP_AJ_G0029340.1 mouse_genomes_project 5 26232739 26386390 - MGP_AJ_P0070673 Lmbr1 protein_coding protein_coding MGP_AJ_T0070674.1 MGP_AJ_G0029340.1 mouse_genomes_project 5 26235044 26386302 - MGP_AJ_P0070674 Lmbr1 protein_coding protein_coding MGP_AJ_T0070675.1 MGP_AJ_G0029340.1 mouse_genomes_project 5 26235298 26386384 - MGP_AJ_P0070675 Lmbr1 protein_coding protein_coding MGP_AJ_T0070676.1 MGP_AJ_G0029340.1 mouse_genomes_project 5 26235766 26386330 - MGP_AJ_P0070676 Lmbr1 protein_coding protein_coding MGP_AJ_T0070677.1 MGP_AJ_G0029340.1 mouse_genomes_project 5 26237943 26297682 - MGP_AJ_P0070677 Lmbr1 protein_coding nonsense_mediated_decay MGP_AJ_T0070678.1 MGP_AJ_G0029340.1 mouse_genomes_project 5 26261258 26369060 - Lmbr1 protein_coding processed_transcript MGP_AJ_T0099999.1 MGP_AJ_G0037965.1 mouse_genomes_project 5 30056544 30056644 + Gm24003 snRNA snRNA MGP_AJ_T0001518.1 MGP_AJ_G0001436.1 mouse_genomes_project 5 35313751 35315158 - TEC TEC MGP_AJ_T0010722.1 MGP_AJ_G0008844.1 mouse_genomes_project 5 134940736 134940824 - Mir721 miRNA miRNA MGP_AJ_T0008243.1 MGP_AJ_G0006714.1 mouse_genomes_project 5 99315881 99318943 + Gm20484 lincRNA lincRNA MGP_AJ_T0018172.1 MGP_AJ_G0015586.1 mouse_genomes_project 5 108232276 108240315 - Gm15787 processed_transcript antisense MGP_AJ_T0018173.1 MGP_AJ_G0015586.1 mouse_genomes_project 5 108232888 108258022 - Gm15787 processed_transcript processed_transcript MGP_AJ_T0018174.1 MGP_AJ_G0015586.1 mouse_genomes_project 5 108240325 108257961 - Gm15787 processed_transcript antisense MGP_AJ_T0018175.1 MGP_AJ_G0015586.1 mouse_genomes_project 5 108248262 108258022 - Gm15787 processed_transcript antisense MGP_AJ_T0018176.1 MGP_AJ_G0015586.1 mouse_genomes_project 5 108248949 108257984 - Gm15787 processed_transcript antisense MGP_AJ_T0018177.1 MGP_AJ_G0015586.1 mouse_genomes_project 5 108249011 108250650 - Gm15787 processed_transcript antisense MGP_AJ_T0018178.1 MGP_AJ_G0015586.1 mouse_genomes_project 5 108250351 108258022 - Gm15787 processed_transcript antisense MGP_AJ_T0018179.1 MGP_AJ_G0015586.1 mouse_genomes_project 5 108250874 108257958 - Gm15787 processed_transcript antisense MGP_AJ_T0073466.1 MGP_AJ_G0029875.1 mouse_genomes_project 5 110554462 110556774 + MGP_AJ_P0073466 Gm6588 protein_coding protein_coding MGP_AJ_T0015212.1 MGP_AJ_G0013307.1 mouse_genomes_project 5 146998686 146999180 + processed_pseudogene processed_pseudogene MGP_AJ_T0102625.1 MGP_AJ_G0040367.1 mouse_genomes_project 5 117445 117622 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0001850.1 MGP_AJ_G0001764.1 mouse_genomes_project 5 130096536 130097236 - TEC TEC MGP_AJ_T0001617.1 MGP_AJ_G0001534.1 mouse_genomes_project 5 55229708 55231450 + TEC TEC MGP_AJ_T0001827.1 MGP_AJ_G0001741.1 mouse_genomes_project 5 123904673 123907533 + TEC TEC MGP_AJ_T0072641.1 MGP_AJ_G0029692.1 mouse_genomes_project 5 88223783 88226183 + Cxcl5 protein_coding retained_intron MGP_AJ_T0072642.1 MGP_AJ_G0029692.1 mouse_genomes_project 5 88223801 88226183 + MGP_AJ_P0072642 Cxcl5 protein_coding protein_coding MGP_AJ_T0008208.1 MGP_AJ_G0006687.1 mouse_genomes_project 5 88386567 88388738 + Gm42530 lincRNA lincRNA MGP_AJ_T0075893.1 MGP_AJ_G0030327.1 mouse_genomes_project 5 144096860 144104673 + MGP_AJ_P0075893 Bud31 protein_coding protein_coding MGP_AJ_T0075894.1 MGP_AJ_G0030327.1 mouse_genomes_project 5 144096894 144098160 + Bud31 protein_coding retained_intron MGP_AJ_T0075895.1 MGP_AJ_G0030327.1 mouse_genomes_project 5 144096895 144104669 + MGP_AJ_P0075895 Bud31 protein_coding protein_coding MGP_AJ_T0075896.1 MGP_AJ_G0030327.1 mouse_genomes_project 5 144096906 144104669 + MGP_AJ_P0075896 Bud31 protein_coding protein_coding MGP_AJ_T0075897.1 MGP_AJ_G0030327.1 mouse_genomes_project 5 144096913 144104666 + MGP_AJ_P0075897 Bud31 protein_coding protein_coding MGP_AJ_T0075898.1 MGP_AJ_G0030327.1 mouse_genomes_project 5 144098645 144101542 + Bud31 protein_coding retained_intron MGP_AJ_T0075899.1 MGP_AJ_G0030327.1 mouse_genomes_project 5 144101315 144104578 + Bud31 protein_coding retained_intron MGP_AJ_T0074763.1 MGP_AJ_G0030109.1 mouse_genomes_project 5 128599421 128610357 + MGP_AJ_P0074763 Kctd7 protein_coding protein_coding MGP_AJ_T0074764.1 MGP_AJ_G0030109.1 mouse_genomes_project 5 128599484 128606283 + MGP_AJ_P0074764 Kctd7 protein_coding nonsense_mediated_decay MGP_AJ_T0074765.1 MGP_AJ_G0030109.1 mouse_genomes_project 5 128599664 128607045 + MGP_AJ_P0074765 Kctd7 protein_coding protein_coding MGP_AJ_T0015042.1 MGP_AJ_G0013137.1 mouse_genomes_project 5 78178094 78178968 - processed_pseudogene processed_pseudogene MGP_AJ_T0100053.1 MGP_AJ_G0038019.1 mouse_genomes_project 5 120916486 120916587 + Gm22965 snRNA snRNA MGP_AJ_T0008269.1 MGP_AJ_G0006733.1 mouse_genomes_project 5 104872500 104880525 + Gm43419 lincRNA lincRNA MGP_AJ_T0004631.1 MGP_AJ_G0004009.1 mouse_genomes_project 5 319665 320399 - Gm43825 antisense antisense MGP_AJ_T0070075.1 MGP_AJ_G0029228.1 mouse_genomes_project 5 493775 532623 + Krit1 protein_coding retained_intron MGP_AJ_T0070076.1 MGP_AJ_G0029228.1 mouse_genomes_project 5 493775 532698 + MGP_AJ_P0070076 Krit1 protein_coding protein_coding MGP_AJ_T0070077.1 MGP_AJ_G0029228.1 mouse_genomes_project 5 493776 502309 + Krit1 protein_coding retained_intron MGP_AJ_T0070078.1 MGP_AJ_G0029228.1 mouse_genomes_project 5 493780 532698 + MGP_AJ_P0070078 Krit1 protein_coding nonsense_mediated_decay MGP_AJ_T0070079.1 MGP_AJ_G0029228.1 mouse_genomes_project 5 493781 536903 + MGP_AJ_P0070079 Krit1 protein_coding protein_coding MGP_AJ_T0070080.1 MGP_AJ_G0029228.1 mouse_genomes_project 5 493996 535642 + MGP_AJ_P0070080 Krit1 protein_coding protein_coding MGP_AJ_T0070081.1 MGP_AJ_G0029228.1 mouse_genomes_project 5 494831 500302 + MGP_AJ_P0070081 Krit1 protein_coding protein_coding MGP_AJ_T0070082.1 MGP_AJ_G0029228.1 mouse_genomes_project 5 495884 502102 + Krit1 protein_coding retained_intron MGP_AJ_T0070083.1 MGP_AJ_G0029228.1 mouse_genomes_project 5 503370 509162 + Krit1 protein_coding retained_intron MGP_AJ_T0070084.1 MGP_AJ_G0029228.1 mouse_genomes_project 5 506283 510581 + Krit1 protein_coding retained_intron MGP_AJ_T0070085.1 MGP_AJ_G0029228.1 mouse_genomes_project 5 513786 515818 + Krit1 protein_coding retained_intron MGP_AJ_T0014993.1 MGP_AJ_G0013088.1 mouse_genomes_project 5 57191263 57191697 - processed_pseudogene processed_pseudogene MGP_AJ_T0008415.1 MGP_AJ_G0006822.1 mouse_genomes_project 5 131023843 131028420 + Gm42626 lincRNA lincRNA MGP_AJ_T0011598.1 MGP_AJ_G0009720.1 mouse_genomes_project 5 89440120 89440396 + Gm24113 misc_RNA misc_RNA MGP_AJ_T0073314.1 MGP_AJ_G0029846.1 mouse_genomes_project 5 108258213 108303689 + MGP_AJ_P0073314 Golga3 protein_coding protein_coding MGP_AJ_T0073315.1 MGP_AJ_G0029846.1 mouse_genomes_project 5 108258369 108268004 + Golga3 protein_coding retained_intron MGP_AJ_T0073316.1 MGP_AJ_G0029846.1 mouse_genomes_project 5 108258391 108266071 + MGP_AJ_P0073316 Golga3 protein_coding protein_coding MGP_AJ_T0073317.1 MGP_AJ_G0029846.1 mouse_genomes_project 5 108258391 108300419 + MGP_AJ_P0073317 Golga3 protein_coding protein_coding MGP_AJ_T0073318.1 MGP_AJ_G0029846.1 mouse_genomes_project 5 108258409 108269917 + Golga3 protein_coding retained_intron MGP_AJ_T0008446.1 MGP_AJ_G0006847.1 mouse_genomes_project 5 145307302 145343511 - lincRNA lincRNA MGP_AJ_T0008236.1 MGP_AJ_G0006711.1 mouse_genomes_project 5 97888936 97896244 + 2310034O05Rik lincRNA lincRNA MGP_AJ_T0008237.1 MGP_AJ_G0006711.1 mouse_genomes_project 5 97888952 97894936 + 2310034O05Rik lincRNA lincRNA MGP_AJ_T0008209.1 MGP_AJ_G0006688.1 mouse_genomes_project 5 88720099 88746745 - Gm19619 lincRNA lincRNA MGP_AJ_T0015138.1 MGP_AJ_G0013233.1 mouse_genomes_project 5 114822420 114823077 - processed_pseudogene processed_pseudogene MGP_AJ_T0072910.1 MGP_AJ_G0029753.1 mouse_genomes_project 5 98209743 98239614 + MGP_AJ_P0072910 Cops4 protein_coding protein_coding MGP_AJ_T0072911.1 MGP_AJ_G0029753.1 mouse_genomes_project 5 98209877 98224005 + Cops4 protein_coding retained_intron MGP_AJ_T0072912.1 MGP_AJ_G0029753.1 mouse_genomes_project 5 98209891 98229768 + MGP_AJ_P0072912 Cops4 protein_coding protein_coding MGP_AJ_T0072913.1 MGP_AJ_G0029753.1 mouse_genomes_project 5 98209906 98225301 + MGP_AJ_P0072913 Cops4 protein_coding nonsense_mediated_decay MGP_AJ_T0072914.1 MGP_AJ_G0029753.1 mouse_genomes_project 5 98210171 98229654 + MGP_AJ_P0072914 Cops4 protein_coding protein_coding MGP_AJ_T0072915.1 MGP_AJ_G0029753.1 mouse_genomes_project 5 98220552 98235879 + MGP_AJ_P0072915 Cops4 protein_coding nonsense_mediated_decay MGP_AJ_T0072916.1 MGP_AJ_G0029753.1 mouse_genomes_project 5 98224151 98239591 + Cops4 protein_coding retained_intron MGP_AJ_T0018181.1 MGP_AJ_G0015588.1 mouse_genomes_project 5 121825842 121827329 + 5830487J09Rik processed_transcript sense_intronic MGP_AJ_T0018182.1 MGP_AJ_G0015588.1 mouse_genomes_project 5 121826369 121828288 + 5830487J09Rik processed_transcript TEC MGP_AJ_T0075932.1 MGP_AJ_G0030336.1 mouse_genomes_project 5 144397624 144910589 - MGP_AJ_P0075932 protein_coding protein_coding MGP_AJ_T0100006.1 MGP_AJ_G0037972.1 mouse_genomes_project 5 47438118 47438225 - Gm22618 snRNA snRNA MGP_AJ_T0070874.1 MGP_AJ_G0029376.1 mouse_genomes_project 5 28142823 28164006 + MGP_AJ_P0070874 Trim54 protein_coding protein_coding MGP_AJ_T0070875.1 MGP_AJ_G0029376.1 mouse_genomes_project 5 28142845 28164008 + MGP_AJ_P0070875 Trim54 protein_coding protein_coding MGP_AJ_T0073238.1 MGP_AJ_G0029825.1 mouse_genomes_project 5 106514248 106528369 - Dgkq protein_coding retained_intron MGP_AJ_T0073239.1 MGP_AJ_G0029825.1 mouse_genomes_project 5 106514248 106537809 - MGP_AJ_P0073239 Dgkq protein_coding nonsense_mediated_decay MGP_AJ_T0073240.1 MGP_AJ_G0029825.1 mouse_genomes_project 5 106514248 106528369 - MGP_AJ_P0073240 Dgkq protein_coding protein_coding MGP_AJ_T0073241.1 MGP_AJ_G0029825.1 mouse_genomes_project 5 106514248 106528369 - MGP_AJ_P0073241 Dgkq protein_coding nonsense_mediated_decay MGP_AJ_T0073242.1 MGP_AJ_G0029825.1 mouse_genomes_project 5 106514248 106528369 - MGP_AJ_P0073242 Dgkq protein_coding nonsense_mediated_decay MGP_AJ_T0073243.1 MGP_AJ_G0029825.1 mouse_genomes_project 5 106514602 106528369 - Dgkq protein_coding retained_intron MGP_AJ_T0073244.1 MGP_AJ_G0029825.1 mouse_genomes_project 5 106514602 106521205 - Dgkq protein_coding retained_intron MGP_AJ_T0073245.1 MGP_AJ_G0029825.1 mouse_genomes_project 5 106514829 106517484 - Dgkq protein_coding retained_intron MGP_AJ_T0073246.1 MGP_AJ_G0029825.1 mouse_genomes_project 5 106518413 106521049 - Dgkq protein_coding retained_intron MGP_AJ_T0073247.1 MGP_AJ_G0029825.1 mouse_genomes_project 5 106521049 106522690 - Dgkq protein_coding retained_intron MGP_AJ_T0073248.1 MGP_AJ_G0029825.1 mouse_genomes_project 5 106522100 106523554 - Dgkq protein_coding retained_intron MGP_AJ_T0070870.1 MGP_AJ_G0029375.1 mouse_genomes_project 5 28133703 28139393 + MGP_AJ_P0070870 Dnajc5g protein_coding nonsense_mediated_decay MGP_AJ_T0070871.1 MGP_AJ_G0029375.1 mouse_genomes_project 5 28135709 28139148 + MGP_AJ_P0070871 Dnajc5g protein_coding protein_coding MGP_AJ_T0070872.1 MGP_AJ_G0029375.1 mouse_genomes_project 5 28135719 28139252 + MGP_AJ_P0070872 Dnajc5g protein_coding nonsense_mediated_decay MGP_AJ_T0070873.1 MGP_AJ_G0029375.1 mouse_genomes_project 5 28135721 28139935 + MGP_AJ_P0070873 Dnajc5g protein_coding protein_coding MGP_AJ_T0001581.1 MGP_AJ_G0001498.1 mouse_genomes_project 5 46578196 46583516 - TEC TEC MGP_AJ_T0075987.1 MGP_AJ_G0030356.1 mouse_genomes_project 5 146179798 146242468 - MGP_AJ_P0075987 Lnx2 protein_coding protein_coding MGP_AJ_T0075988.1 MGP_AJ_G0030356.1 mouse_genomes_project 5 146181409 146182181 - Lnx2 protein_coding processed_transcript MGP_AJ_T0072553.1 MGP_AJ_G0029665.1 mouse_genomes_project 5 85327216 85329322 + MGP_AJ_P0072553 Cabs1 protein_coding protein_coding MGP_AJ_T0004817.1 MGP_AJ_G0004151.1 mouse_genomes_project 5 120462166 120470253 + Gm15637 antisense antisense MGP_AJ_T0072716.1 MGP_AJ_G0029714.1 mouse_genomes_project 5 89787721 89794447 - MGP_AJ_P0072716 Cxcl9 protein_coding protein_coding MGP_AJ_T0072717.1 MGP_AJ_G0029714.1 mouse_genomes_project 5 89792990 89794446 - Cxcl9 protein_coding retained_intron MGP_AJ_T0100001.1 MGP_AJ_G0037967.1 mouse_genomes_project 5 31689238 31689343 + Gm22847 snRNA snRNA MGP_AJ_T0070292.1 MGP_AJ_G0029262.1 mouse_genomes_project 5 12863088 13305405 + MGP_AJ_P0070292 Cacna2d1 protein_coding protein_coding MGP_AJ_T0070293.1 MGP_AJ_G0029262.1 mouse_genomes_project 5 12863185 13301963 + MGP_AJ_P0070293 Cacna2d1 protein_coding protein_coding MGP_AJ_T0070294.1 MGP_AJ_G0029262.1 mouse_genomes_project 5 12863185 13301963 + MGP_AJ_P0070294 Cacna2d1 protein_coding protein_coding MGP_AJ_T0070295.1 MGP_AJ_G0029262.1 mouse_genomes_project 5 12863185 13305398 + MGP_AJ_P0070295 Cacna2d1 protein_coding protein_coding MGP_AJ_T0070296.1 MGP_AJ_G0029262.1 mouse_genomes_project 5 12863185 13301945 + MGP_AJ_P0070296 Cacna2d1 protein_coding protein_coding MGP_AJ_T0070297.1 MGP_AJ_G0029262.1 mouse_genomes_project 5 12863185 13301963 + MGP_AJ_P0070297 Cacna2d1 protein_coding protein_coding MGP_AJ_T0070298.1 MGP_AJ_G0029262.1 mouse_genomes_project 5 12863226 13301621 + MGP_AJ_P0070298 Cacna2d1 protein_coding protein_coding MGP_AJ_T0070299.1 MGP_AJ_G0029262.1 mouse_genomes_project 5 12863308 13018785 + MGP_AJ_P0070299 Cacna2d1 protein_coding protein_coding MGP_AJ_T0070300.1 MGP_AJ_G0029262.1 mouse_genomes_project 5 12953217 13202810 + Cacna2d1 protein_coding retained_intron MGP_AJ_T0070301.1 MGP_AJ_G0029262.1 mouse_genomes_project 5 13257257 13261012 + Cacna2d1 protein_coding retained_intron MGP_AJ_T0070302.1 MGP_AJ_G0029262.1 mouse_genomes_project 5 13257417 13272326 + Cacna2d1 protein_coding retained_intron MGP_AJ_T0070303.1 MGP_AJ_G0029262.1 mouse_genomes_project 5 13292604 13293536 + Cacna2d1 protein_coding retained_intron MGP_AJ_T0010657.1 MGP_AJ_G0008779.1 mouse_genomes_project 5 392310 392378 + Gm22926 miRNA miRNA MGP_AJ_T0001710.1 MGP_AJ_G0001625.1 mouse_genomes_project 5 84658400 84659487 + TEC TEC MGP_AJ_T0098700.1 MGP_AJ_G0036684.1 mouse_genomes_project 5 130049005 130049128 + Gm27266 rRNA rRNA MGP_AJ_T0004655.1 MGP_AJ_G0004029.1 mouse_genomes_project 5 27543120 27555256 + Gm42765 antisense antisense MGP_AJ_T0004656.1 MGP_AJ_G0004029.1 mouse_genomes_project 5 27543163 27557514 + Gm42765 antisense antisense MGP_AJ_T0076001.1 MGP_AJ_G0030363.1 mouse_genomes_project 5 146600746 146721377 + MGP_AJ_P0076001 Pan3 protein_coding protein_coding MGP_AJ_T0076002.1 MGP_AJ_G0030363.1 mouse_genomes_project 5 146601038 146721371 + MGP_AJ_P0076002 Pan3 protein_coding protein_coding MGP_AJ_T0076003.1 MGP_AJ_G0030363.1 mouse_genomes_project 5 146601481 146626130 + Pan3 protein_coding retained_intron MGP_AJ_T0076004.1 MGP_AJ_G0030363.1 mouse_genomes_project 5 146601481 146624520 + Pan3 protein_coding processed_transcript MGP_AJ_T0076005.1 MGP_AJ_G0030363.1 mouse_genomes_project 5 146601481 146700008 + MGP_AJ_P0076005 Pan3 protein_coding nonsense_mediated_decay MGP_AJ_T0076006.1 MGP_AJ_G0030363.1 mouse_genomes_project 5 146621339 146660510 + Pan3 protein_coding retained_intron MGP_AJ_T0076007.1 MGP_AJ_G0030363.1 mouse_genomes_project 5 146621343 146718823 + MGP_AJ_P0076007 Pan3 protein_coding protein_coding MGP_AJ_T0076008.1 MGP_AJ_G0030363.1 mouse_genomes_project 5 146621343 146718823 + MGP_AJ_P0076008 Pan3 protein_coding nonsense_mediated_decay MGP_AJ_T0076009.1 MGP_AJ_G0030363.1 mouse_genomes_project 5 146621423 146699631 + MGP_AJ_P0076009 Pan3 protein_coding protein_coding MGP_AJ_T0076010.1 MGP_AJ_G0030363.1 mouse_genomes_project 5 146622423 146624898 + Pan3 protein_coding retained_intron MGP_AJ_T0076011.1 MGP_AJ_G0030363.1 mouse_genomes_project 5 146624046 146664575 + Pan3 protein_coding processed_transcript MGP_AJ_T0076012.1 MGP_AJ_G0030363.1 mouse_genomes_project 5 146624077 146721371 + MGP_AJ_P0076012 Pan3 protein_coding nonsense_mediated_decay MGP_AJ_T0076013.1 MGP_AJ_G0030363.1 mouse_genomes_project 5 146689488 146693250 + Pan3 protein_coding retained_intron MGP_AJ_T0076014.1 MGP_AJ_G0030363.1 mouse_genomes_project 5 146691272 146699661 + Pan3 protein_coding retained_intron MGP_AJ_T0076015.1 MGP_AJ_G0030363.1 mouse_genomes_project 5 146691673 146721371 + MGP_AJ_P0076015 Pan3 protein_coding protein_coding MGP_AJ_T0076016.1 MGP_AJ_G0030363.1 mouse_genomes_project 5 146699073 146699989 + Pan3 protein_coding retained_intron MGP_AJ_T0076017.1 MGP_AJ_G0030363.1 mouse_genomes_project 5 146702685 146721363 + Pan3 protein_coding retained_intron MGP_AJ_T0076018.1 MGP_AJ_G0030363.1 mouse_genomes_project 5 146702890 146704645 + Pan3 protein_coding retained_intron MGP_AJ_T0076019.1 MGP_AJ_G0030363.1 mouse_genomes_project 5 146702966 146706258 + Pan3 protein_coding processed_transcript MGP_AJ_T0076020.1 MGP_AJ_G0030363.1 mouse_genomes_project 5 146704300 146706203 + Pan3 protein_coding retained_intron MGP_AJ_T0076021.1 MGP_AJ_G0030363.1 mouse_genomes_project 5 146709206 146716011 + Pan3 protein_coding retained_intron MGP_AJ_T0076022.1 MGP_AJ_G0030363.1 mouse_genomes_project 5 146710098 146718554 + Pan3 protein_coding processed_transcript MGP_AJ_T0076023.1 MGP_AJ_G0030363.1 mouse_genomes_project 5 146712159 146721368 + MGP_AJ_P0076023 Pan3 protein_coding protein_coding MGP_AJ_T0004698.1 MGP_AJ_G0004062.1 mouse_genomes_project 5 49728445 49729694 + Gm43685 antisense antisense MGP_AJ_T0001826.1 MGP_AJ_G0001740.1 mouse_genomes_project 5 123750343 123753103 - TEC TEC MGP_AJ_T0073696.1 MGP_AJ_G0029920.1 mouse_genomes_project 5 113163417 113256513 + MGP_AJ_P0073696 Sppl3 protein_coding protein_coding MGP_AJ_T0073697.1 MGP_AJ_G0029920.1 mouse_genomes_project 5 113163426 113215775 + Sppl3 protein_coding processed_transcript MGP_AJ_T0073698.1 MGP_AJ_G0029920.1 mouse_genomes_project 5 113163777 113242603 + MGP_AJ_P0073698 Sppl3 protein_coding nonsense_mediated_decay MGP_AJ_T0073699.1 MGP_AJ_G0029920.1 mouse_genomes_project 5 113231055 113233550 + Sppl3 protein_coding retained_intron MGP_AJ_T0073700.1 MGP_AJ_G0029920.1 mouse_genomes_project 5 113252479 113255979 + Sppl3 protein_coding retained_intron MGP_AJ_T0070582.1 MGP_AJ_G0029319.1 mouse_genomes_project 5 21661335 21690645 + MGP_AJ_P0070582 Nub1 protein_coding protein_coding MGP_AJ_T0070583.1 MGP_AJ_G0029319.1 mouse_genomes_project 5 21661627 21690647 + MGP_AJ_P0070583 Nub1 protein_coding protein_coding MGP_AJ_T0070584.1 MGP_AJ_G0029319.1 mouse_genomes_project 5 21661790 21690645 + Nub1 protein_coding retained_intron MGP_AJ_T0001740.1 MGP_AJ_G0001655.1 mouse_genomes_project 5 102126321 102127571 + TEC TEC MGP_AJ_T0074527.1 MGP_AJ_G0030061.1 mouse_genomes_project 5 122937610 122952467 - MGP_AJ_P0074527 Rilpl2 protein_coding protein_coding MGP_AJ_T0074528.1 MGP_AJ_G0030061.1 mouse_genomes_project 5 122949376 122952411 - Rilpl2 protein_coding retained_intron MGP_AJ_T0008207.1 MGP_AJ_G0006686.1 mouse_genomes_project 5 88287645 88291269 + Gm43086 lincRNA lincRNA MGP_AJ_T0074424.1 MGP_AJ_G0030046.1 mouse_genomes_project 5 122346455 122349741 - MGP_AJ_P0074424 Hcar1 protein_coding protein_coding MGP_AJ_T0070321.1 MGP_AJ_G0029271.1 mouse_genomes_project 5 14718385 14782050 - MGP_AJ_P0070321 Cd36 protein_coding protein_coding MGP_AJ_T0070322.1 MGP_AJ_G0029271.1 mouse_genomes_project 5 14718711 14767950 - MGP_AJ_P0070322 Cd36 protein_coding protein_coding MGP_AJ_T0070323.1 MGP_AJ_G0029271.1 mouse_genomes_project 5 14719062 14821229 - MGP_AJ_P0070323 Cd36 protein_coding protein_coding MGP_AJ_T0070324.1 MGP_AJ_G0029271.1 mouse_genomes_project 5 14719064 14781987 - MGP_AJ_P0070324 Cd36 protein_coding protein_coding MGP_AJ_T0070325.1 MGP_AJ_G0029271.1 mouse_genomes_project 5 14719181 14767971 - MGP_AJ_P0070325 Cd36 protein_coding protein_coding MGP_AJ_T0070326.1 MGP_AJ_G0029271.1 mouse_genomes_project 5 14743136 14821283 - MGP_AJ_P0070326 Cd36 protein_coding protein_coding MGP_AJ_T0015161.1 MGP_AJ_G0013256.1 mouse_genomes_project 5 134253141 134253998 - processed_pseudogene processed_pseudogene MGP_AJ_T0070220.1 MGP_AJ_G0029249.1 mouse_genomes_project 5 5493342 5586261 + MGP_AJ_P0070220 Abcb1a protein_coding unknown_likely_coding MGP_AJ_T0070221.1 MGP_AJ_G0029249.1 mouse_genomes_project 5 5552594 5587270 + Abcb1a protein_coding retained_intron MGP_AJ_T0070222.1 MGP_AJ_G0029249.1 mouse_genomes_project 5 5552624 5555950 + Abcb1a protein_coding processed_transcript MGP_AJ_T0075589.1 MGP_AJ_G0030264.1 mouse_genomes_project 5 138874193 139197524 - MGP_AJ_P0075589 Mad1l1 protein_coding protein_coding MGP_AJ_T0075590.1 MGP_AJ_G0030264.1 mouse_genomes_project 5 138874193 139197522 - MGP_AJ_P0075590 Mad1l1 protein_coding nonsense_mediated_decay MGP_AJ_T0075591.1 MGP_AJ_G0030264.1 mouse_genomes_project 5 138874198 139047055 - Mad1l1 protein_coding processed_transcript MGP_AJ_T0075592.1 MGP_AJ_G0030264.1 mouse_genomes_project 5 138955522 138982313 - Mad1l1 protein_coding processed_transcript MGP_AJ_T0075593.1 MGP_AJ_G0030264.1 mouse_genomes_project 5 139011524 139046796 - Mad1l1 protein_coding processed_transcript MGP_AJ_T0075594.1 MGP_AJ_G0030264.1 mouse_genomes_project 5 139036421 139134801 - Mad1l1 protein_coding processed_transcript MGP_AJ_T0071112.1 MGP_AJ_G0029411.1 mouse_genomes_project 5 30480577 30518364 + MGP_AJ_P0071112 Maea protein_coding protein_coding MGP_AJ_T0071113.1 MGP_AJ_G0029411.1 mouse_genomes_project 5 30480629 30507767 + MGP_AJ_P0071113 Maea protein_coding protein_coding MGP_AJ_T0071114.1 MGP_AJ_G0029411.1 mouse_genomes_project 5 30480633 30505424 + MGP_AJ_P0071114 Maea protein_coding nonsense_mediated_decay MGP_AJ_T0071115.1 MGP_AJ_G0029411.1 mouse_genomes_project 5 30481253 30505475 + MGP_AJ_P0071115 Maea protein_coding protein_coding MGP_AJ_T0071116.1 MGP_AJ_G0029411.1 mouse_genomes_project 5 30507642 30516889 + Maea protein_coding retained_intron MGP_AJ_T0071117.1 MGP_AJ_G0029411.1 mouse_genomes_project 5 30516664 30517617 + Maea protein_coding retained_intron MGP_AJ_T0070133.1 MGP_AJ_G0029236.1 mouse_genomes_project 5 2348121 2369829 - MGP_AJ_P0070133 Gtpbp10 protein_coding protein_coding MGP_AJ_T0070134.1 MGP_AJ_G0029236.1 mouse_genomes_project 5 2349809 2369814 - MGP_AJ_P0070134 Gtpbp10 protein_coding protein_coding MGP_AJ_T0070135.1 MGP_AJ_G0029236.1 mouse_genomes_project 5 2350027 2369804 - MGP_AJ_P0070135 Gtpbp10 protein_coding protein_coding MGP_AJ_T0070136.1 MGP_AJ_G0029236.1 mouse_genomes_project 5 2352478 2354768 - Gtpbp10 protein_coding retained_intron MGP_AJ_T0070137.1 MGP_AJ_G0029236.1 mouse_genomes_project 5 2352498 2354023 - Gtpbp10 protein_coding retained_intron MGP_AJ_T0070138.1 MGP_AJ_G0029236.1 mouse_genomes_project 5 2352915 2367533 - MGP_AJ_P0070138 Gtpbp10 protein_coding nonsense_mediated_decay MGP_AJ_T0070139.1 MGP_AJ_G0029236.1 mouse_genomes_project 5 2354642 2369752 - MGP_AJ_P0070139 Gtpbp10 protein_coding nonsense_mediated_decay MGP_AJ_T0070140.1 MGP_AJ_G0029236.1 mouse_genomes_project 5 2354686 2366045 - Gtpbp10 protein_coding retained_intron MGP_AJ_T0070141.1 MGP_AJ_G0029236.1 mouse_genomes_project 5 2354723 2357846 - Gtpbp10 protein_coding retained_intron MGP_AJ_T0070142.1 MGP_AJ_G0029236.1 mouse_genomes_project 5 2356927 2369773 - MGP_AJ_P0070142 Gtpbp10 protein_coding nonsense_mediated_decay MGP_AJ_T0070143.1 MGP_AJ_G0029236.1 mouse_genomes_project 5 2369159 2369807 - MGP_AJ_P0070143 Gtpbp10 protein_coding protein_coding MGP_AJ_T0071908.1 MGP_AJ_G0029545.1 mouse_genomes_project 5 62611168 62615846 + Lias protein_coding retained_intron MGP_AJ_T0071909.1 MGP_AJ_G0029545.1 mouse_genomes_project 5 62611171 62628439 + MGP_AJ_P0071909 Lias protein_coding protein_coding MGP_AJ_T0071910.1 MGP_AJ_G0029545.1 mouse_genomes_project 5 62611188 62615275 + Lias protein_coding retained_intron MGP_AJ_T0071911.1 MGP_AJ_G0029545.1 mouse_genomes_project 5 62611189 62617349 + MGP_AJ_P0071911 Lias protein_coding protein_coding MGP_AJ_T0071912.1 MGP_AJ_G0029545.1 mouse_genomes_project 5 62617204 62619581 + Lias protein_coding retained_intron MGP_AJ_T0014986.1 MGP_AJ_G0013081.1 mouse_genomes_project 5 54553270 54554714 + processed_pseudogene processed_pseudogene MGP_AJ_T0004632.1 MGP_AJ_G0004010.1 mouse_genomes_project 5 324826 326772 - 4833413G10Rik antisense antisense MGP_AJ_T0001751.1 MGP_AJ_G0001666.1 mouse_genomes_project 5 106415838 106419120 - TEC TEC MGP_AJ_T0015051.1 MGP_AJ_G0013146.1 mouse_genomes_project 5 84469660 84471212 - processed_pseudogene processed_pseudogene MGP_AJ_T0004875.1 MGP_AJ_G0004191.1 mouse_genomes_project 5 140269377 140277125 - Gm16035 antisense antisense MGP_AJ_T0004822.1 MGP_AJ_G0004155.1 mouse_genomes_project 5 121753631 121770103 - Gm15857 antisense antisense MGP_AJ_T0072545.1 MGP_AJ_G0029662.1 mouse_genomes_project 5 85270018 85277490 + MGP_AJ_P0072545 Csn3 protein_coding protein_coding MGP_AJ_T0072546.1 MGP_AJ_G0029662.1 mouse_genomes_project 5 85270046 85275257 + MGP_AJ_P0072546 Csn3 protein_coding protein_coding MGP_AJ_T0072547.1 MGP_AJ_G0029662.1 mouse_genomes_project 5 85270051 85273694 + Csn3 protein_coding retained_intron MGP_AJ_T0072548.1 MGP_AJ_G0029662.1 mouse_genomes_project 5 85270066 85273694 + Csn3 protein_coding retained_intron MGP_AJ_T0072549.1 MGP_AJ_G0029662.1 mouse_genomes_project 5 85270074 85277090 + MGP_AJ_P0072549 Csn3 protein_coding protein_coding MGP_AJ_T0072550.1 MGP_AJ_G0029662.1 mouse_genomes_project 5 85272250 85274380 + Csn3 protein_coding retained_intron MGP_AJ_T0001892.1 MGP_AJ_G0001805.1 mouse_genomes_project 5 140208584 140209265 - TEC TEC MGP_AJ_T0099069.1 MGP_AJ_G0037042.1 mouse_genomes_project 5 149796468 149800516 + Gm42531 sense_intronic sense_intronic MGP_AJ_T0072622.1 MGP_AJ_G0029687.1 mouse_genomes_project 5 87918597 87934584 + MGP_AJ_P0072622 Alb protein_coding protein_coding MGP_AJ_T0072623.1 MGP_AJ_G0029687.1 mouse_genomes_project 5 87920019 87920423 + Alb protein_coding processed_transcript MGP_AJ_T0072624.1 MGP_AJ_G0029687.1 mouse_genomes_project 5 87920400 87932643 + Alb protein_coding processed_transcript MGP_AJ_T0008474.1 MGP_AJ_G0006871.1 mouse_genomes_project 5 148567285 148595374 + BC028471 lincRNA lincRNA MGP_AJ_T0008475.1 MGP_AJ_G0006871.1 mouse_genomes_project 5 148568695 148576384 + BC028471 lincRNA lincRNA MGP_AJ_T0008476.1 MGP_AJ_G0006871.1 mouse_genomes_project 5 148568697 148587391 + BC028471 lincRNA lincRNA MGP_AJ_T0008477.1 MGP_AJ_G0006871.1 mouse_genomes_project 5 148568912 148594264 + BC028471 lincRNA lincRNA MGP_AJ_T0008478.1 MGP_AJ_G0006871.1 mouse_genomes_project 5 148576349 148595374 + BC028471 lincRNA lincRNA MGP_AJ_T0008479.1 MGP_AJ_G0006871.1 mouse_genomes_project 5 148576361 148577183 + BC028471 lincRNA lincRNA MGP_AJ_T0072451.1 MGP_AJ_G0029634.1 mouse_genomes_project 5 83454220 83470899 - MGP_AJ_P0072451 Gnrhr protein_coding protein_coding MGP_AJ_T0072452.1 MGP_AJ_G0029634.1 mouse_genomes_project 5 83455460 83470868 - MGP_AJ_P0072452 Gnrhr protein_coding protein_coding MGP_AJ_T0072453.1 MGP_AJ_G0029634.1 mouse_genomes_project 5 83458022 83470844 - MGP_AJ_P0072453 Gnrhr protein_coding protein_coding MGP_AJ_T0074780.1 MGP_AJ_G0030112.1 mouse_genomes_project 5 128703377 128711565 - MGP_AJ_P0074780 Sbds protein_coding protein_coding MGP_AJ_T0074781.1 MGP_AJ_G0030112.1 mouse_genomes_project 5 128704051 128711440 - MGP_AJ_P0074781 Sbds protein_coding nonsense_mediated_decay MGP_AJ_T0074782.1 MGP_AJ_G0030112.1 mouse_genomes_project 5 128705530 128710118 - MGP_AJ_P0074782 Sbds protein_coding protein_coding MGP_AJ_T0074783.1 MGP_AJ_G0030112.1 mouse_genomes_project 5 128706077 128711527 - Sbds protein_coding processed_transcript MGP_AJ_T0074784.1 MGP_AJ_G0030112.1 mouse_genomes_project 5 128708494 128711513 - Sbds protein_coding processed_transcript MGP_AJ_T0001794.1 MGP_AJ_G0001709.1 mouse_genomes_project 5 118478680 118479827 + TEC TEC MGP_AJ_T0099067.1 MGP_AJ_G0037040.1 mouse_genomes_project 5 148644031 148645752 + 4933425D22Rik sense_intronic sense_intronic MGP_AJ_T0001682.1 MGP_AJ_G0001598.1 mouse_genomes_project 5 69815492 69817986 - TEC TEC MGP_AJ_T0071875.1 MGP_AJ_G0029540.1 mouse_genomes_project 5 62352073 62389139 + MGP_AJ_P0071875 Klhl5 protein_coding protein_coding MGP_AJ_T0071876.1 MGP_AJ_G0029540.1 mouse_genomes_project 5 62352149 62354580 + Klhl5 protein_coding retained_intron MGP_AJ_T0071877.1 MGP_AJ_G0029540.1 mouse_genomes_project 5 62352394 62389144 + MGP_AJ_P0071877 Klhl5 protein_coding protein_coding MGP_AJ_T0071878.1 MGP_AJ_G0029540.1 mouse_genomes_project 5 62352400 62355530 + Klhl5 protein_coding processed_transcript MGP_AJ_T0071879.1 MGP_AJ_G0029540.1 mouse_genomes_project 5 62352668 62374635 + Klhl5 protein_coding processed_transcript MGP_AJ_T0071880.1 MGP_AJ_G0029540.1 mouse_genomes_project 5 62377074 62389139 + MGP_AJ_P0071880 Klhl5 protein_coding nonsense_mediated_decay MGP_AJ_T0001492.1 MGP_AJ_G0001411.1 mouse_genomes_project 5 28239513 28243685 - TEC TEC MGP_AJ_T0072741.1 MGP_AJ_G0029717.1 mouse_genomes_project 5 89890837 89915076 - MGP_AJ_P0072741 Nup54 protein_coding protein_coding MGP_AJ_T0072742.1 MGP_AJ_G0029717.1 mouse_genomes_project 5 89892123 89893887 - Nup54 protein_coding retained_intron MGP_AJ_T0072743.1 MGP_AJ_G0029717.1 mouse_genomes_project 5 89898907 89900862 - Nup54 protein_coding retained_intron MGP_AJ_T0072744.1 MGP_AJ_G0029717.1 mouse_genomes_project 5 89901680 89914403 - Nup54 protein_coding processed_transcript MGP_AJ_T0072745.1 MGP_AJ_G0029717.1 mouse_genomes_project 5 89903966 89914948 - Nup54 protein_coding retained_intron MGP_AJ_T0072746.1 MGP_AJ_G0029717.1 mouse_genomes_project 5 89904237 89914971 - MGP_AJ_P0072746 Nup54 protein_coding nonsense_mediated_decay MGP_AJ_T0072747.1 MGP_AJ_G0029717.1 mouse_genomes_project 5 89906845 89914980 - MGP_AJ_P0072747 Nup54 protein_coding protein_coding MGP_AJ_T0072748.1 MGP_AJ_G0029717.1 mouse_genomes_project 5 89906853 89914614 - MGP_AJ_P0072748 Nup54 protein_coding protein_coding MGP_AJ_T0073273.1 MGP_AJ_G0029834.1 mouse_genomes_project 5 107089748 107101024 - MGP_AJ_P0073273 protein_coding protein_coding MGP_AJ_T0101285.1 MGP_AJ_G0039251.1 mouse_genomes_project 5 57948289 57948412 - Gm23708 snoRNA snoRNA MGP_AJ_T0001483.1 MGP_AJ_G0001403.1 mouse_genomes_project 5 25048836 25053188 - TEC TEC MGP_AJ_T0072584.1 MGP_AJ_G0029679.1 mouse_genomes_project 5 86235838 86254719 + MGP_AJ_P0072584 Dck protein_coding protein_coding MGP_AJ_T0072585.1 MGP_AJ_G0029679.1 mouse_genomes_project 5 86240513 86241332 + Dck protein_coding retained_intron MGP_AJ_T0074895.1 MGP_AJ_G0030126.1 mouse_genomes_project 5 133073366 133075392 - MGP_AJ_P0074895 Syna protein_coding protein_coding MGP_AJ_T0015222.1 MGP_AJ_G0013317.1 mouse_genomes_project 5 150258859 150260715 - processed_pseudogene processed_pseudogene MGP_AJ_T0073039.1 MGP_AJ_G0029786.1 mouse_genomes_project 5 102730800 102792441 - MGP_AJ_P0073039 protein_coding protein_coding MGP_AJ_T0008448.1 MGP_AJ_G0006849.1 mouse_genomes_project 5 145744023 145757501 - Gm34333 lincRNA lincRNA MGP_AJ_T0071985.1 MGP_AJ_G0029556.1 mouse_genomes_project 5 63506667 63546453 + MGP_AJ_P0071985 Nsun7 protein_coding protein_coding MGP_AJ_T0071986.1 MGP_AJ_G0029556.1 mouse_genomes_project 5 63506682 63547416 + MGP_AJ_P0071986 Nsun7 protein_coding protein_coding MGP_AJ_T0071987.1 MGP_AJ_G0029556.1 mouse_genomes_project 5 63506788 63512541 + Nsun7 protein_coding retained_intron MGP_AJ_T0071988.1 MGP_AJ_G0029556.1 mouse_genomes_project 5 63507082 63547405 + MGP_AJ_P0071988 Nsun7 protein_coding protein_coding MGP_AJ_T0071478.1 MGP_AJ_G0029469.1 mouse_genomes_project 5 34918768 34923010 + MGP_AJ_P0071478 Cytl1 protein_coding protein_coding MGP_AJ_T0071479.1 MGP_AJ_G0029469.1 mouse_genomes_project 5 34920510 34923005 + Cytl1 protein_coding retained_intron MGP_AJ_T0075753.1 MGP_AJ_G0030299.1 mouse_genomes_project 5 142304206 142343112 + MGP_AJ_P0075753 Grid2ip protein_coding protein_coding MGP_AJ_T0075754.1 MGP_AJ_G0030299.1 mouse_genomes_project 5 142310638 142343442 + MGP_AJ_P0075754 Grid2ip protein_coding protein_coding MGP_AJ_T0075755.1 MGP_AJ_G0030299.1 mouse_genomes_project 5 142316409 142343796 + MGP_AJ_P0075755 Grid2ip protein_coding protein_coding MGP_AJ_T0075756.1 MGP_AJ_G0030299.1 mouse_genomes_project 5 142319291 142322051 + Grid2ip protein_coding retained_intron MGP_AJ_T0075757.1 MGP_AJ_G0030299.1 mouse_genomes_project 5 142321778 142326702 + Grid2ip protein_coding retained_intron MGP_AJ_T0014844.1 MGP_AJ_G0012939.1 mouse_genomes_project 5 706712 708421 + processed_pseudogene processed_pseudogene MGP_AJ_T0010671.1 MGP_AJ_G0008793.1 mouse_genomes_project 5 31895402 31895524 - Mir467g miRNA miRNA MGP_AJ_T0076144.1 MGP_AJ_G0030383.1 mouse_genomes_project 5 149756897 149762592 + Brca2 protein_coding retained_intron MGP_AJ_T0076145.1 MGP_AJ_G0030383.1 mouse_genomes_project 5 149756897 149803887 + MGP_AJ_P0076145 Brca2 protein_coding protein_coding MGP_AJ_T0076146.1 MGP_AJ_G0030383.1 mouse_genomes_project 5 149756899 149771140 + Brca2 protein_coding retained_intron MGP_AJ_T0076147.1 MGP_AJ_G0030383.1 mouse_genomes_project 5 149756899 149773912 + MGP_AJ_P0076147 Brca2 protein_coding protein_coding MGP_AJ_T0076148.1 MGP_AJ_G0030383.1 mouse_genomes_project 5 149756911 149803888 + MGP_AJ_P0076148 Brca2 protein_coding protein_coding MGP_AJ_T0076149.1 MGP_AJ_G0030383.1 mouse_genomes_project 5 149756957 149760929 + Brca2 protein_coding processed_transcript MGP_AJ_T0076150.1 MGP_AJ_G0030383.1 mouse_genomes_project 5 149761936 149765154 + Brca2 protein_coding processed_transcript MGP_AJ_T0076151.1 MGP_AJ_G0030383.1 mouse_genomes_project 5 149786422 149788657 + Brca2 protein_coding retained_intron MGP_AJ_T0076152.1 MGP_AJ_G0030383.1 mouse_genomes_project 5 149787932 149791045 + Brca2 protein_coding retained_intron MGP_AJ_T0076153.1 MGP_AJ_G0030383.1 mouse_genomes_project 5 149790531 149791400 + Brca2 protein_coding retained_intron MGP_AJ_T0076154.1 MGP_AJ_G0030383.1 mouse_genomes_project 5 149791115 149794230 + Brca2 protein_coding retained_intron MGP_AJ_T0076155.1 MGP_AJ_G0030383.1 mouse_genomes_project 5 149800698 149803887 + Brca2 protein_coding processed_transcript MGP_AJ_T0076156.1 MGP_AJ_G0030383.1 mouse_genomes_project 5 149800979 149803473 + Brca2 protein_coding retained_intron MGP_AJ_T0076157.1 MGP_AJ_G0030383.1 mouse_genomes_project 5 149802741 149804470 + Brca2 protein_coding retained_intron MGP_AJ_T0014911.1 MGP_AJ_G0013006.1 mouse_genomes_project 5 22425303 22425905 + processed_pseudogene processed_pseudogene MGP_AJ_T0008210.1 MGP_AJ_G0006689.1 mouse_genomes_project 5 89226882 89231472 - Gm28271 lincRNA lincRNA MGP_AJ_T0008214.1 MGP_AJ_G0006693.1 mouse_genomes_project 5 90261713 90266982 - 4932430I15Rik lincRNA lincRNA MGP_AJ_T0073367.1 MGP_AJ_G0029856.1 mouse_genomes_project 5 108743243 108750289 + MGP_AJ_P0073367 Ddx51 protein_coding protein_coding MGP_AJ_T0073368.1 MGP_AJ_G0029856.1 mouse_genomes_project 5 108743338 108744938 + Ddx51 protein_coding retained_intron MGP_AJ_T0073369.1 MGP_AJ_G0029856.1 mouse_genomes_project 5 108744929 108745698 + Ddx51 protein_coding retained_intron MGP_AJ_T0073370.1 MGP_AJ_G0029856.1 mouse_genomes_project 5 108746427 108746903 + Ddx51 protein_coding retained_intron MGP_AJ_T0073371.1 MGP_AJ_G0029856.1 mouse_genomes_project 5 108746654 108747664 + MGP_AJ_P0073371 Ddx51 protein_coding nonsense_mediated_decay MGP_AJ_T0100067.1 MGP_AJ_G0038033.1 mouse_genomes_project 5 149785763 149785864 - Gm23641 snRNA snRNA MGP_AJ_T0070817.1 MGP_AJ_G0029367.1 mouse_genomes_project 5 27943365 27953232 + MGP_AJ_P0070817 Khk protein_coding protein_coding MGP_AJ_T0070818.1 MGP_AJ_G0029367.1 mouse_genomes_project 5 27943571 27953030 + MGP_AJ_P0070818 Khk protein_coding protein_coding MGP_AJ_T0070819.1 MGP_AJ_G0029367.1 mouse_genomes_project 5 27943814 27953173 + MGP_AJ_P0070819 Khk protein_coding protein_coding MGP_AJ_T0070820.1 MGP_AJ_G0029367.1 mouse_genomes_project 5 27943839 27952777 + MGP_AJ_P0070820 Khk protein_coding protein_coding MGP_AJ_T0070821.1 MGP_AJ_G0029367.1 mouse_genomes_project 5 27952597 27953229 + Khk protein_coding retained_intron MGP_AJ_T0101826.1 MGP_AJ_G0039729.1 mouse_genomes_project 5 73448903 73449373 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0010686.1 MGP_AJ_G0008808.1 mouse_genomes_project 5 73172901 73173002 + Gm25374 miRNA miRNA MGP_AJ_T0015209.1 MGP_AJ_G0013304.1 mouse_genomes_project 5 146495043 146495509 - processed_pseudogene processed_pseudogene MGP_AJ_T0001437.1 MGP_AJ_G0001358.1 mouse_genomes_project 5 2500157 2502094 + TEC TEC MGP_AJ_T0008275.1 MGP_AJ_G0006739.1 mouse_genomes_project 5 106229856 106231767 + Gm10419 lincRNA lincRNA MGP_AJ_T0008276.1 MGP_AJ_G0006739.1 mouse_genomes_project 5 106229878 106234895 + Gm10419 lincRNA lincRNA MGP_AJ_T0008277.1 MGP_AJ_G0006739.1 mouse_genomes_project 5 106230323 106237950 + Gm10419 lincRNA lincRNA MGP_AJ_T0008278.1 MGP_AJ_G0006739.1 mouse_genomes_project 5 106231945 106240316 + Gm10419 lincRNA lincRNA MGP_AJ_T0008279.1 MGP_AJ_G0006739.1 mouse_genomes_project 5 106232949 106234896 + Gm10419 lincRNA lincRNA MGP_AJ_T0014855.1 MGP_AJ_G0012950.1 mouse_genomes_project 5 5812650 5812845 + processed_pseudogene processed_pseudogene MGP_AJ_T0018120.1 MGP_AJ_G0015567.1 mouse_genomes_project 5 22087042 22089058 + 2900005J15Rik processed_transcript processed_transcript MGP_AJ_T0018121.1 MGP_AJ_G0015567.1 mouse_genomes_project 5 22087517 22097786 + 2900005J15Rik processed_transcript processed_transcript MGP_AJ_T0011602.1 MGP_AJ_G0009724.1 mouse_genomes_project 5 98120357 98120536 + Gm27286 misc_RNA misc_RNA MGP_AJ_T0004720.1 MGP_AJ_G0004082.1 mouse_genomes_project 5 71959006 71984866 + Gm15984 antisense antisense MGP_AJ_T0004721.1 MGP_AJ_G0004082.1 mouse_genomes_project 5 71959428 71969538 + Gm15984 antisense antisense MGP_AJ_T0074323.1 MGP_AJ_G0030032.1 mouse_genomes_project 5 121605309 121616224 - MGP_AJ_P0074323 Hpd protein_coding protein_coding MGP_AJ_T0074324.1 MGP_AJ_G0030032.1 mouse_genomes_project 5 121605374 121606421 - Hpd protein_coding processed_transcript MGP_AJ_T0074325.1 MGP_AJ_G0030032.1 mouse_genomes_project 5 121605603 121609416 - MGP_AJ_P0074325 Hpd protein_coding protein_coding MGP_AJ_T0074326.1 MGP_AJ_G0030032.1 mouse_genomes_project 5 121611029 121616219 - Hpd protein_coding retained_intron MGP_AJ_T0074327.1 MGP_AJ_G0030032.1 mouse_genomes_project 5 121611029 121616220 - MGP_AJ_P0074327 Hpd protein_coding protein_coding MGP_AJ_T0074328.1 MGP_AJ_G0030032.1 mouse_genomes_project 5 121614155 121615564 - Hpd protein_coding processed_transcript MGP_AJ_T0073865.1 MGP_AJ_G0029950.1 mouse_genomes_project 5 115502068 115538024 + MGP_AJ_P0073865 Vsig10 protein_coding protein_coding MGP_AJ_T0073866.1 MGP_AJ_G0029950.1 mouse_genomes_project 5 115502278 115536130 + MGP_AJ_P0073866 Vsig10 protein_coding protein_coding MGP_AJ_T0073867.1 MGP_AJ_G0029950.1 mouse_genomes_project 5 115502304 115521897 + Vsig10 protein_coding retained_intron MGP_AJ_T0073868.1 MGP_AJ_G0029950.1 mouse_genomes_project 5 115502347 115508061 + Vsig10 protein_coding retained_intron MGP_AJ_T0073869.1 MGP_AJ_G0029950.1 mouse_genomes_project 5 115506544 115538016 + Vsig10 protein_coding processed_transcript MGP_AJ_T0073870.1 MGP_AJ_G0029950.1 mouse_genomes_project 5 115532742 115538024 + Vsig10 protein_coding processed_transcript MGP_AJ_T0071989.1 MGP_AJ_G0029557.1 mouse_genomes_project 5 63548072 63563136 - Apbb2 protein_coding retained_intron MGP_AJ_T0071990.1 MGP_AJ_G0029557.1 mouse_genomes_project 5 63548094 63865710 - MGP_AJ_P0071990 Apbb2 protein_coding protein_coding MGP_AJ_T0071991.1 MGP_AJ_G0029557.1 mouse_genomes_project 5 63548097 63865736 - MGP_AJ_P0071991 Apbb2 protein_coding protein_coding MGP_AJ_T0071992.1 MGP_AJ_G0029557.1 mouse_genomes_project 5 63548097 63865633 - MGP_AJ_P0071992 Apbb2 protein_coding protein_coding MGP_AJ_T0071993.1 MGP_AJ_G0029557.1 mouse_genomes_project 5 63548209 63865615 - MGP_AJ_P0071993 Apbb2 protein_coding protein_coding MGP_AJ_T0071994.1 MGP_AJ_G0029557.1 mouse_genomes_project 5 63550028 63744451 - Apbb2 protein_coding retained_intron MGP_AJ_T0071995.1 MGP_AJ_G0029557.1 mouse_genomes_project 5 63551239 63587384 - Apbb2 protein_coding processed_transcript MGP_AJ_T0071996.1 MGP_AJ_G0029557.1 mouse_genomes_project 5 63551255 63865623 - MGP_AJ_P0071996 Apbb2 protein_coding protein_coding MGP_AJ_T0071997.1 MGP_AJ_G0029557.1 mouse_genomes_project 5 63551255 63865623 - MGP_AJ_P0071997 Apbb2 protein_coding protein_coding MGP_AJ_T0071998.1 MGP_AJ_G0029557.1 mouse_genomes_project 5 63551572 63744450 - MGP_AJ_P0071998 Apbb2 protein_coding nonsense_mediated_decay MGP_AJ_T0071999.1 MGP_AJ_G0029557.1 mouse_genomes_project 5 63556944 63587182 - Apbb2 protein_coding processed_transcript MGP_AJ_T0072000.1 MGP_AJ_G0029557.1 mouse_genomes_project 5 63649641 63865635 - Apbb2 protein_coding retained_intron MGP_AJ_T0072001.1 MGP_AJ_G0029557.1 mouse_genomes_project 5 63649641 63865622 - Apbb2 protein_coding retained_intron MGP_AJ_T0072002.1 MGP_AJ_G0029557.1 mouse_genomes_project 5 63703699 63865592 - MGP_AJ_P0072002 Apbb2 protein_coding protein_coding MGP_AJ_T0072003.1 MGP_AJ_G0029557.1 mouse_genomes_project 5 63703712 63760041 - MGP_AJ_P0072003 Apbb2 protein_coding protein_coding MGP_AJ_T0072004.1 MGP_AJ_G0029557.1 mouse_genomes_project 5 63703741 63865623 - MGP_AJ_P0072004 Apbb2 protein_coding protein_coding MGP_AJ_T0072005.1 MGP_AJ_G0029557.1 mouse_genomes_project 5 63703945 63865726 - MGP_AJ_P0072005 Apbb2 protein_coding protein_coding MGP_AJ_T0072006.1 MGP_AJ_G0029557.1 mouse_genomes_project 5 63703978 63760048 - MGP_AJ_P0072006 Apbb2 protein_coding protein_coding MGP_AJ_T0072007.1 MGP_AJ_G0029557.1 mouse_genomes_project 5 63703984 63792981 - MGP_AJ_P0072007 Apbb2 protein_coding protein_coding MGP_AJ_T0072008.1 MGP_AJ_G0029557.1 mouse_genomes_project 5 63713738 63865624 - Apbb2 protein_coding retained_intron MGP_AJ_T0072009.1 MGP_AJ_G0029557.1 mouse_genomes_project 5 63786754 63865640 - Apbb2 protein_coding retained_intron MGP_AJ_T0073452.1 MGP_AJ_G0029872.1 mouse_genomes_project 5 110457702 110459935 - MGP_AJ_P0073452 Gm6583 protein_coding protein_coding MGP_AJ_T0073943.1 MGP_AJ_G0029966.1 mouse_genomes_project 5 118702178 118716831 - MGP_AJ_P0073943 Sdsl protein_coding protein_coding MGP_AJ_T0073944.1 MGP_AJ_G0029966.1 mouse_genomes_project 5 118702194 118716878 - MGP_AJ_P0073944 Sdsl protein_coding protein_coding MGP_AJ_T0073945.1 MGP_AJ_G0029966.1 mouse_genomes_project 5 118704680 118711484 - MGP_AJ_P0073945 Sdsl protein_coding protein_coding MGP_AJ_T0072650.1 MGP_AJ_G0029697.1 mouse_genomes_project 5 88356387 88358262 + MGP_AJ_P0072650 Cxcl1 protein_coding protein_coding MGP_AJ_T0072651.1 MGP_AJ_G0029697.1 mouse_genomes_project 5 88356389 88358260 + Cxcl1 protein_coding retained_intron MGP_AJ_T0071050.1 MGP_AJ_G0029400.1 mouse_genomes_project 5 29307203 29409906 + Plb1 protein_coding retained_intron MGP_AJ_T0071051.1 MGP_AJ_G0029400.1 mouse_genomes_project 5 29307205 29310101 + Plb1 protein_coding retained_intron MGP_AJ_T0071052.1 MGP_AJ_G0029400.1 mouse_genomes_project 5 29307205 29327593 + Plb1 protein_coding processed_transcript MGP_AJ_T0071053.1 MGP_AJ_G0029400.1 mouse_genomes_project 5 29307209 29443746 + MGP_AJ_P0071053 Plb1 protein_coding protein_coding MGP_AJ_T0071054.1 MGP_AJ_G0029400.1 mouse_genomes_project 5 29307243 29372277 + Plb1 protein_coding retained_intron MGP_AJ_T0071055.1 MGP_AJ_G0029400.1 mouse_genomes_project 5 29316533 29401871 + MGP_AJ_P0071055 Plb1 protein_coding protein_coding MGP_AJ_T0071056.1 MGP_AJ_G0029400.1 mouse_genomes_project 5 29324802 29443748 + MGP_AJ_P0071056 Plb1 protein_coding protein_coding MGP_AJ_T0071057.1 MGP_AJ_G0029400.1 mouse_genomes_project 5 29433056 29445912 + Plb1 protein_coding processed_transcript MGP_AJ_T0071058.1 MGP_AJ_G0029400.1 mouse_genomes_project 5 29434181 29443741 + Plb1 protein_coding processed_transcript MGP_AJ_T0008110.1 MGP_AJ_G0006610.1 mouse_genomes_project 5 35079343 35083484 + Gm20052 lincRNA lincRNA MGP_AJ_T0008111.1 MGP_AJ_G0006610.1 mouse_genomes_project 5 35079510 35080546 + Gm20052 lincRNA lincRNA MGP_AJ_T0008112.1 MGP_AJ_G0006610.1 mouse_genomes_project 5 35079921 35082366 + Gm20052 lincRNA lincRNA MGP_AJ_T0008113.1 MGP_AJ_G0006610.1 mouse_genomes_project 5 35080268 35082843 + Gm20052 lincRNA lincRNA MGP_AJ_T0008114.1 MGP_AJ_G0006610.1 mouse_genomes_project 5 35080279 35082704 + Gm20052 lincRNA lincRNA MGP_AJ_T0073333.1 MGP_AJ_G0029850.1 mouse_genomes_project 5 108366928 108419023 + MGP_AJ_P0073333 Pole protein_coding protein_coding MGP_AJ_T0073334.1 MGP_AJ_G0029850.1 mouse_genomes_project 5 108366963 108372446 + MGP_AJ_P0073334 Pole protein_coding protein_coding MGP_AJ_T0073335.1 MGP_AJ_G0029850.1 mouse_genomes_project 5 108366999 108389466 + Pole protein_coding retained_intron MGP_AJ_T0073336.1 MGP_AJ_G0029850.1 mouse_genomes_project 5 108398338 108400467 + Pole protein_coding retained_intron MGP_AJ_T0073337.1 MGP_AJ_G0029850.1 mouse_genomes_project 5 108409220 108419000 + Pole protein_coding retained_intron MGP_AJ_T0073338.1 MGP_AJ_G0029850.1 mouse_genomes_project 5 108412328 108419002 + MGP_AJ_P0073338 Pole protein_coding protein_coding MGP_AJ_T0073339.1 MGP_AJ_G0029850.1 mouse_genomes_project 5 108415003 108418985 + Pole protein_coding retained_intron MGP_AJ_T0071623.1 MGP_AJ_G0029496.1 mouse_genomes_project 5 41340580 41391992 - MGP_AJ_P0071623 Tapt1 protein_coding protein_coding MGP_AJ_T0071624.1 MGP_AJ_G0029496.1 mouse_genomes_project 5 41340585 41391987 - MGP_AJ_P0071624 Tapt1 protein_coding nonsense_mediated_decay MGP_AJ_T0071625.1 MGP_AJ_G0029496.1 mouse_genomes_project 5 41341922 41348243 - Tapt1 protein_coding retained_intron MGP_AJ_T0071626.1 MGP_AJ_G0029496.1 mouse_genomes_project 5 41349649 41357529 - Tapt1 protein_coding retained_intron MGP_AJ_T0071627.1 MGP_AJ_G0029496.1 mouse_genomes_project 5 41354098 41383583 - MGP_AJ_P0071627 Tapt1 protein_coding nonsense_mediated_decay MGP_AJ_T0071628.1 MGP_AJ_G0029496.1 mouse_genomes_project 5 41354113 41369713 - Tapt1 protein_coding retained_intron MGP_AJ_T0071629.1 MGP_AJ_G0029496.1 mouse_genomes_project 5 41357805 41369883 - Tapt1 protein_coding retained_intron MGP_AJ_T0071630.1 MGP_AJ_G0029496.1 mouse_genomes_project 5 41383199 41391996 - Tapt1 protein_coding retained_intron MGP_AJ_T0072676.1 MGP_AJ_G0029707.1 mouse_genomes_project 5 89463802 89500619 - MGP_AJ_P0072676 Cdkl2 protein_coding protein_coding MGP_AJ_T0072677.1 MGP_AJ_G0029707.1 mouse_genomes_project 5 89463802 89500620 - MGP_AJ_P0072677 Cdkl2 protein_coding protein_coding MGP_AJ_T0072678.1 MGP_AJ_G0029707.1 mouse_genomes_project 5 89465532 89500274 - MGP_AJ_P0072678 Cdkl2 protein_coding protein_coding MGP_AJ_T0072679.1 MGP_AJ_G0029707.1 mouse_genomes_project 5 89465551 89500250 - MGP_AJ_P0072679 Cdkl2 protein_coding protein_coding MGP_AJ_T0072680.1 MGP_AJ_G0029707.1 mouse_genomes_project 5 89465764 89475363 - Cdkl2 protein_coding retained_intron MGP_AJ_T0072681.1 MGP_AJ_G0029707.1 mouse_genomes_project 5 89479943 89488607 - MGP_AJ_P0072681 Cdkl2 protein_coding protein_coding MGP_AJ_T0072682.1 MGP_AJ_G0029707.1 mouse_genomes_project 5 89499844 89501461 - Cdkl2 protein_coding TEC MGP_AJ_T0018147.1 MGP_AJ_G0015576.1 mouse_genomes_project 5 54764772 54902581 - 4932441J04Rik processed_transcript antisense MGP_AJ_T0018148.1 MGP_AJ_G0015576.1 mouse_genomes_project 5 54900799 54904863 - 4932441J04Rik processed_transcript retained_intron MGP_AJ_T0070486.1 MGP_AJ_G0029302.1 mouse_genomes_project 5 21136889 21156432 + MGP_AJ_P0070486 Nupl2 protein_coding protein_coding MGP_AJ_T0070487.1 MGP_AJ_G0029302.1 mouse_genomes_project 5 21136926 21155256 + MGP_AJ_P0070487 Nupl2 protein_coding nonsense_mediated_decay MGP_AJ_T0070488.1 MGP_AJ_G0029302.1 mouse_genomes_project 5 21139434 21141808 + Nupl2 protein_coding retained_intron MGP_AJ_T0070489.1 MGP_AJ_G0029302.1 mouse_genomes_project 5 21150376 21153851 + Nupl2 protein_coding retained_intron MGP_AJ_T0001680.1 MGP_AJ_G0001596.1 mouse_genomes_project 5 66796875 66797201 - TEC TEC MGP_AJ_T0074999.1 MGP_AJ_G0030147.1 mouse_genomes_project 5 133825513 133884046 - MGP_AJ_P0074999 Fkbp6 protein_coding protein_coding MGP_AJ_T0075000.1 MGP_AJ_G0030147.1 mouse_genomes_project 5 133825513 133884016 - MGP_AJ_P0075000 Fkbp6 protein_coding protein_coding MGP_AJ_T0075001.1 MGP_AJ_G0030147.1 mouse_genomes_project 5 133871368 133883877 - MGP_AJ_P0075001 Fkbp6 protein_coding protein_coding MGP_AJ_T0075002.1 MGP_AJ_G0030147.1 mouse_genomes_project 5 133871368 133884045 - MGP_AJ_P0075002 Fkbp6 protein_coding protein_coding MGP_AJ_T0074304.1 MGP_AJ_G0030028.1 mouse_genomes_project 5 121502408 121550385 + Tmem120b protein_coding processed_transcript MGP_AJ_T0074305.1 MGP_AJ_G0030028.1 mouse_genomes_project 5 121510030 121551452 + MGP_AJ_P0074305 Tmem120b protein_coding protein_coding MGP_AJ_T0074306.1 MGP_AJ_G0030028.1 mouse_genomes_project 5 121510080 121548833 + MGP_AJ_P0074306 Tmem120b protein_coding nonsense_mediated_decay MGP_AJ_T0074307.1 MGP_AJ_G0030028.1 mouse_genomes_project 5 121510081 121550712 + MGP_AJ_P0074307 Tmem120b protein_coding protein_coding MGP_AJ_T0074308.1 MGP_AJ_G0030028.1 mouse_genomes_project 5 121510096 121548851 + MGP_AJ_P0074308 Tmem120b protein_coding protein_coding MGP_AJ_T0074309.1 MGP_AJ_G0030028.1 mouse_genomes_project 5 121510106 121538417 + Tmem120b protein_coding retained_intron MGP_AJ_T0074310.1 MGP_AJ_G0030028.1 mouse_genomes_project 5 121510125 121534194 + Tmem120b protein_coding retained_intron MGP_AJ_T0074311.1 MGP_AJ_G0030028.1 mouse_genomes_project 5 121533726 121549523 + Tmem120b protein_coding retained_intron MGP_AJ_T0001683.1 MGP_AJ_G0001599.1 mouse_genomes_project 5 70046826 70048933 - TEC TEC MGP_AJ_T0018206.1 MGP_AJ_G0015594.1 mouse_genomes_project 5 148192794 148212897 - Gm15411 processed_transcript lincRNA MGP_AJ_T0018207.1 MGP_AJ_G0015594.1 mouse_genomes_project 5 148195485 148212868 - Gm15411 processed_transcript lincRNA MGP_AJ_T0018208.1 MGP_AJ_G0015594.1 mouse_genomes_project 5 148210880 148212897 - Gm15411 processed_transcript retained_intron MGP_AJ_T0071847.1 MGP_AJ_G0029534.1 mouse_genomes_project 5 61355617 61373037 + MGP_AJ_P0071847 Tbc1d1 protein_coding protein_coding MGP_AJ_T0071848.1 MGP_AJ_G0029534.1 mouse_genomes_project 5 61358817 61564918 + MGP_AJ_P0071848 Tbc1d1 protein_coding protein_coding MGP_AJ_T0071849.1 MGP_AJ_G0029534.1 mouse_genomes_project 5 61359186 61564918 + MGP_AJ_P0071849 Tbc1d1 protein_coding protein_coding MGP_AJ_T0071850.1 MGP_AJ_G0029534.1 mouse_genomes_project 5 61359577 61373778 + Tbc1d1 protein_coding retained_intron MGP_AJ_T0071851.1 MGP_AJ_G0029534.1 mouse_genomes_project 5 61359577 61564918 + MGP_AJ_P0071851 Tbc1d1 protein_coding protein_coding MGP_AJ_T0071852.1 MGP_AJ_G0029534.1 mouse_genomes_project 5 61434842 61564918 + MGP_AJ_P0071852 Tbc1d1 protein_coding protein_coding MGP_AJ_T0071853.1 MGP_AJ_G0029534.1 mouse_genomes_project 5 61484846 61494163 + MGP_AJ_P0071853 Tbc1d1 protein_coding nonsense_mediated_decay MGP_AJ_T0071854.1 MGP_AJ_G0029534.1 mouse_genomes_project 5 61508186 61564913 + Tbc1d1 protein_coding processed_transcript MGP_AJ_T0070940.1 MGP_AJ_G0029385.1 mouse_genomes_project 5 28271567 28272125 - MGP_AJ_P0070940 Gm9970 protein_coding protein_coding MGP_AJ_T0014846.1 MGP_AJ_G0012941.1 mouse_genomes_project 5 2377612 2378042 + processed_pseudogene processed_pseudogene MGP_AJ_T0070156.1 MGP_AJ_G0029238.1 mouse_genomes_project 5 2467053 2497879 - MGP_AJ_P0070156 Steap2 protein_coding protein_coding MGP_AJ_T0070157.1 MGP_AJ_G0029238.1 mouse_genomes_project 5 2467055 2485282 - MGP_AJ_P0070157 Steap2 protein_coding protein_coding MGP_AJ_T0070158.1 MGP_AJ_G0029238.1 mouse_genomes_project 5 2468178 2497361 - MGP_AJ_P0070158 Steap2 protein_coding protein_coding MGP_AJ_T0070159.1 MGP_AJ_G0029238.1 mouse_genomes_project 5 2473156 2497353 - MGP_AJ_P0070159 Steap2 protein_coding protein_coding MGP_AJ_T0070160.1 MGP_AJ_G0029238.1 mouse_genomes_project 5 2473709 2497368 - MGP_AJ_P0070160 Steap2 protein_coding protein_coding MGP_AJ_T0070161.1 MGP_AJ_G0029238.1 mouse_genomes_project 5 2473943 2479504 - Steap2 protein_coding processed_transcript MGP_AJ_T0070162.1 MGP_AJ_G0029238.1 mouse_genomes_project 5 2473948 2497361 - MGP_AJ_P0070162 Steap2 protein_coding protein_coding MGP_AJ_T0070163.1 MGP_AJ_G0029238.1 mouse_genomes_project 5 2475723 2497627 - MGP_AJ_P0070163 Steap2 protein_coding protein_coding MGP_AJ_T0070164.1 MGP_AJ_G0029238.1 mouse_genomes_project 5 2478313 2497834 - Steap2 protein_coding retained_intron MGP_AJ_T0072307.1 MGP_AJ_G0029613.1 mouse_genomes_project 5 73796572 73838290 + MGP_AJ_P0072307 Exoc1 protein_coding protein_coding MGP_AJ_T0072308.1 MGP_AJ_G0029613.1 mouse_genomes_project 5 73796584 73838281 + MGP_AJ_P0072308 Exoc1 protein_coding protein_coding MGP_AJ_T0072309.1 MGP_AJ_G0029613.1 mouse_genomes_project 5 73796589 73807822 + Exoc1 protein_coding retained_intron MGP_AJ_T0072310.1 MGP_AJ_G0029613.1 mouse_genomes_project 5 73796605 73829912 + Exoc1 protein_coding processed_transcript MGP_AJ_T0072311.1 MGP_AJ_G0029613.1 mouse_genomes_project 5 73796619 73809204 + Exoc1 protein_coding retained_intron MGP_AJ_T0072312.1 MGP_AJ_G0029613.1 mouse_genomes_project 5 73796619 73838283 + MGP_AJ_P0072312 Exoc1 protein_coding protein_coding MGP_AJ_T0072313.1 MGP_AJ_G0029613.1 mouse_genomes_project 5 73810290 73817864 + Exoc1 protein_coding retained_intron MGP_AJ_T0072314.1 MGP_AJ_G0029613.1 mouse_genomes_project 5 73820981 73823753 + Exoc1 protein_coding retained_intron MGP_AJ_T0072315.1 MGP_AJ_G0029613.1 mouse_genomes_project 5 73828482 73835227 + Exoc1 protein_coding retained_intron MGP_AJ_T0072316.1 MGP_AJ_G0029613.1 mouse_genomes_project 5 73829345 73836047 + Exoc1 protein_coding retained_intron MGP_AJ_T0072317.1 MGP_AJ_G0029613.1 mouse_genomes_project 5 73829483 73834991 + MGP_AJ_P0072317 Exoc1 protein_coding protein_coding MGP_AJ_T0072318.1 MGP_AJ_G0029613.1 mouse_genomes_project 5 73835912 73837985 + Exoc1 protein_coding retained_intron MGP_AJ_T0001654.1 MGP_AJ_G0001570.1 mouse_genomes_project 5 63680488 63682698 - TEC TEC MGP_AJ_T0011588.1 MGP_AJ_G0009710.1 mouse_genomes_project 5 5838508 5838650 - Gm27941 misc_RNA misc_RNA MGP_AJ_T0008072.1 MGP_AJ_G0006586.1 mouse_genomes_project 5 21967514 21979910 + 1500035N22Rik lincRNA lincRNA MGP_AJ_T0001618.1 MGP_AJ_G0001535.1 mouse_genomes_project 5 55305709 55309212 + TEC TEC MGP_AJ_T0004889.1 MGP_AJ_G0004200.1 mouse_genomes_project 5 148493837 148498954 - Gm19719 antisense antisense MGP_AJ_T0004689.1 MGP_AJ_G0004056.1 mouse_genomes_project 5 41818366 41837214 + Gm43507 antisense antisense MGP_AJ_T0004690.1 MGP_AJ_G0004056.1 mouse_genomes_project 5 41828243 41838625 + Gm43507 antisense antisense MGP_AJ_T0008329.1 MGP_AJ_G0006767.1 mouse_genomes_project 5 114207941 114210971 - Gm13842 lincRNA lincRNA MGP_AJ_T0008330.1 MGP_AJ_G0006767.1 mouse_genomes_project 5 114208376 114211365 - Gm13842 lincRNA lincRNA MGP_AJ_T0075941.1 MGP_AJ_G0030342.1 mouse_genomes_project 5 145275350 145290678 - MGP_AJ_P0075941 Gm3402 protein_coding protein_coding MGP_AJ_T0001558.1 MGP_AJ_G0001476.1 mouse_genomes_project 5 45505397 45506784 + TEC TEC MGP_AJ_T0073917.1 MGP_AJ_G0029961.1 mouse_genomes_project 5 116761202 116922969 + Med13l protein_coding retained_intron MGP_AJ_T0073918.1 MGP_AJ_G0029961.1 mouse_genomes_project 5 116761242 116968560 + MGP_AJ_P0073918 Med13l protein_coding protein_coding MGP_AJ_T0073919.1 MGP_AJ_G0029961.1 mouse_genomes_project 5 116761262 116967037 + MGP_AJ_P0073919 Med13l protein_coding protein_coding MGP_AJ_T0073920.1 MGP_AJ_G0029961.1 mouse_genomes_project 5 116762104 116796642 + Med13l protein_coding processed_transcript MGP_AJ_T0073921.1 MGP_AJ_G0029961.1 mouse_genomes_project 5 116950471 116967037 + Med13l protein_coding retained_intron MGP_AJ_T0073922.1 MGP_AJ_G0029961.1 mouse_genomes_project 5 116953479 116967037 + Med13l protein_coding retained_intron MGP_AJ_T0015167.1 MGP_AJ_G0013262.1 mouse_genomes_project 5 136165683 136166201 + processed_pseudogene processed_pseudogene MGP_AJ_T0015072.1 MGP_AJ_G0013167.1 mouse_genomes_project 5 90466977 90467551 + processed_pseudogene processed_pseudogene MGP_AJ_T0015179.1 MGP_AJ_G0013274.1 mouse_genomes_project 5 138568197 138568573 + processed_pseudogene processed_pseudogene MGP_AJ_T0014898.1 MGP_AJ_G0012993.1 mouse_genomes_project 5 19864251 19864861 + processed_pseudogene processed_pseudogene MGP_AJ_T0010725.1 MGP_AJ_G0008847.1 mouse_genomes_project 5 135848499 135848564 - Mir7036 miRNA miRNA MGP_AJ_T0014968.1 MGP_AJ_G0013063.1 mouse_genomes_project 5 46595559 46595872 + processed_pseudogene processed_pseudogene MGP_AJ_T0001730.1 MGP_AJ_G0001645.1 mouse_genomes_project 5 98120754 98122589 + TEC TEC MGP_AJ_T0008388.1 MGP_AJ_G0006806.1 mouse_genomes_project 5 125161799 125195548 + Gm43757 lincRNA lincRNA MGP_AJ_T0008389.1 MGP_AJ_G0006806.1 mouse_genomes_project 5 125161821 125166696 + Gm43757 lincRNA lincRNA MGP_AJ_T0074923.1 MGP_AJ_G0030131.1 mouse_genomes_project 5 133225218 133270533 - MGP_AJ_P0074923 Eln protein_coding protein_coding MGP_AJ_T0074924.1 MGP_AJ_G0030131.1 mouse_genomes_project 5 133225463 133248411 - Eln protein_coding retained_intron MGP_AJ_T0074925.1 MGP_AJ_G0030131.1 mouse_genomes_project 5 133225463 133270456 - MGP_AJ_P0074925 Eln protein_coding nonsense_mediated_decay MGP_AJ_T0074926.1 MGP_AJ_G0030131.1 mouse_genomes_project 5 133248713 133252319 - Eln protein_coding retained_intron MGP_AJ_T0074927.1 MGP_AJ_G0030131.1 mouse_genomes_project 5 133267935 133270463 - Eln protein_coding retained_intron MGP_AJ_T0011616.1 MGP_AJ_G0009738.1 mouse_genomes_project 5 148459336 148459629 - Gm24105 misc_RNA misc_RNA MGP_AJ_T0074982.1 MGP_AJ_G0030143.1 mouse_genomes_project 5 133676285 133693274 + MGP_AJ_P0074982 Tbl2 protein_coding protein_coding MGP_AJ_T0074983.1 MGP_AJ_G0030143.1 mouse_genomes_project 5 133676314 133687335 + MGP_AJ_P0074983 Tbl2 protein_coding nonsense_mediated_decay MGP_AJ_T0074984.1 MGP_AJ_G0030143.1 mouse_genomes_project 5 133676314 133684184 + MGP_AJ_P0074984 Tbl2 protein_coding nonsense_mediated_decay MGP_AJ_T0074985.1 MGP_AJ_G0030143.1 mouse_genomes_project 5 133676319 133681031 + MGP_AJ_P0074985 Tbl2 protein_coding nonsense_mediated_decay MGP_AJ_T0074986.1 MGP_AJ_G0030143.1 mouse_genomes_project 5 133679346 133684222 + MGP_AJ_P0074986 Tbl2 protein_coding protein_coding MGP_AJ_T0072030.1 MGP_AJ_G0029560.1 mouse_genomes_project 5 64352129 64357008 - MGP_AJ_P0072030 Phox2b protein_coding protein_coding MGP_AJ_T0072031.1 MGP_AJ_G0029560.1 mouse_genomes_project 5 64354746 64356764 - MGP_AJ_P0072031 Phox2b protein_coding protein_coding MGP_AJ_T0008153.1 MGP_AJ_G0006644.1 mouse_genomes_project 5 61243405 61248634 + 5830416I19Rik lincRNA lincRNA MGP_AJ_T0072287.1 MGP_AJ_G0029608.1 mouse_genomes_project 5 73393395 73404911 + Srd5a3 protein_coding retained_intron MGP_AJ_T0072288.1 MGP_AJ_G0029608.1 mouse_genomes_project 5 73393430 73393987 + Srd5a3 protein_coding processed_transcript MGP_AJ_T0072289.1 MGP_AJ_G0029608.1 mouse_genomes_project 5 73393452 73408775 + MGP_AJ_P0072289 Srd5a3 protein_coding protein_coding MGP_AJ_T0072290.1 MGP_AJ_G0029608.1 mouse_genomes_project 5 73393824 73403194 + MGP_AJ_P0072290 Srd5a3 protein_coding protein_coding MGP_AJ_T0072291.1 MGP_AJ_G0029608.1 mouse_genomes_project 5 73393854 73403386 + MGP_AJ_P0072291 Srd5a3 protein_coding protein_coding MGP_AJ_T0072292.1 MGP_AJ_G0029608.1 mouse_genomes_project 5 73400075 73408544 + MGP_AJ_P0072292 Srd5a3 protein_coding protein_coding MGP_AJ_T0072293.1 MGP_AJ_G0029608.1 mouse_genomes_project 5 73406095 73408804 + Srd5a3 protein_coding retained_intron MGP_AJ_T0075367.1 MGP_AJ_G0030215.1 mouse_genomes_project 5 136473129 136501758 - MGP_AJ_P0075367 Cyp3a13 protein_coding protein_coding MGP_AJ_T0018144.1 MGP_AJ_G0015575.1 mouse_genomes_project 5 50160670 50183551 - 5033403H07Rik processed_transcript lincRNA MGP_AJ_T0018145.1 MGP_AJ_G0015575.1 mouse_genomes_project 5 50160682 50181417 - 5033403H07Rik processed_transcript lincRNA MGP_AJ_T0018146.1 MGP_AJ_G0015575.1 mouse_genomes_project 5 50179483 50181468 - 5033403H07Rik processed_transcript retained_intron MGP_AJ_T0015120.1 MGP_AJ_G0013215.1 mouse_genomes_project 5 108409811 108410130 + processed_pseudogene processed_pseudogene MGP_AJ_T0075671.1 MGP_AJ_G0030282.1 mouse_genomes_project 5 141440808 141445047 - MGP_AJ_P0075671 Papolb protein_coding protein_coding MGP_AJ_T0070926.1 MGP_AJ_G0029383.1 mouse_genomes_project 5 28228166 28231489 - MGP_AJ_P0070926 Zfp513 protein_coding protein_coding MGP_AJ_T0070927.1 MGP_AJ_G0029383.1 mouse_genomes_project 5 28228168 28231228 - MGP_AJ_P0070927 Zfp513 protein_coding protein_coding MGP_AJ_T0070928.1 MGP_AJ_G0029383.1 mouse_genomes_project 5 28228685 28229947 - Zfp513 protein_coding processed_transcript MGP_AJ_T0070929.1 MGP_AJ_G0029383.1 mouse_genomes_project 5 28228966 28229472 - MGP_AJ_P0070929 Zfp513 protein_coding protein_coding MGP_AJ_T0070930.1 MGP_AJ_G0029383.1 mouse_genomes_project 5 28229066 28229948 - Zfp513 protein_coding processed_transcript MGP_AJ_T0070931.1 MGP_AJ_G0029383.1 mouse_genomes_project 5 28229174 28229948 - Zfp513 protein_coding processed_transcript MGP_AJ_T0070932.1 MGP_AJ_G0029383.1 mouse_genomes_project 5 28229854 28231401 - MGP_AJ_P0070932 Zfp513 protein_coding protein_coding MGP_AJ_T0070933.1 MGP_AJ_G0029383.1 mouse_genomes_project 5 28229941 28231411 - MGP_AJ_P0070933 Zfp513 protein_coding protein_coding MGP_AJ_T0070122.1 MGP_AJ_G0029234.1 mouse_genomes_project 5 2244306 2283279 - MGP_AJ_P0070122 1700015F17Rik protein_coding protein_coding MGP_AJ_T0070123.1 MGP_AJ_G0029234.1 mouse_genomes_project 5 2244306 2267543 - MGP_AJ_P0070123 1700015F17Rik protein_coding protein_coding MGP_AJ_T0070124.1 MGP_AJ_G0029234.1 mouse_genomes_project 5 2244311 2283216 - MGP_AJ_P0070124 1700015F17Rik protein_coding nonsense_mediated_decay MGP_AJ_T0075170.1 MGP_AJ_G0030177.1 mouse_genomes_project 5 135477240 135482101 + MGP_AJ_P0075170 Ift22 protein_coding protein_coding MGP_AJ_T0075171.1 MGP_AJ_G0030177.1 mouse_genomes_project 5 135477280 135482100 + MGP_AJ_P0075171 Ift22 protein_coding protein_coding MGP_AJ_T0075172.1 MGP_AJ_G0030177.1 mouse_genomes_project 5 135477284 135481250 + MGP_AJ_P0075172 Ift22 protein_coding protein_coding MGP_AJ_T0075173.1 MGP_AJ_G0030177.1 mouse_genomes_project 5 135479958 135480532 + Ift22 protein_coding retained_intron MGP_AJ_T0018180.1 MGP_AJ_G0015587.1 mouse_genomes_project 5 121407730 121433695 - Gm44574 processed_transcript processed_transcript MGP_AJ_T0072843.1 MGP_AJ_G0029741.1 mouse_genomes_project 5 96220298 96221348 + MGP_AJ_P0072843 Gm11111 protein_coding protein_coding MGP_AJ_T0098690.1 MGP_AJ_G0036674.1 mouse_genomes_project 5 50536303 50536417 - n-R5s172 rRNA rRNA MGP_AJ_T0070646.1 MGP_AJ_G0029334.1 mouse_genomes_project 5 25091502 25093888 + protein_coding retained_intron MGP_AJ_T0015206.1 MGP_AJ_G0013301.1 mouse_genomes_project 5 145348656 145349130 - processed_pseudogene processed_pseudogene MGP_AJ_T0001745.1 MGP_AJ_G0001660.1 mouse_genomes_project 5 104956952 104960522 - TEC TEC MGP_AJ_T0072112.1 MGP_AJ_G0029577.1 mouse_genomes_project 5 68865519 69326381 + MGP_AJ_P0072112 Gabrb1 protein_coding protein_coding MGP_AJ_T0072113.1 MGP_AJ_G0029577.1 mouse_genomes_project 5 68907202 69361936 + MGP_AJ_P0072113 Gabrb1 protein_coding protein_coding MGP_AJ_T0015165.1 MGP_AJ_G0013260.1 mouse_genomes_project 5 135861279 135861526 + processed_pseudogene processed_pseudogene MGP_AJ_T0074614.1 MGP_AJ_G0030078.1 mouse_genomes_project 5 123872731 123891525 + MGP_AJ_P0074614 Bri3bp protein_coding protein_coding MGP_AJ_T0074615.1 MGP_AJ_G0030078.1 mouse_genomes_project 5 123872913 123885873 + MGP_AJ_P0074615 Bri3bp protein_coding protein_coding MGP_AJ_T0071657.1 MGP_AJ_G0029502.1 mouse_genomes_project 5 42689605 42694896 + MGP_AJ_P0071657 Med28 protein_coding protein_coding MGP_AJ_T0071658.1 MGP_AJ_G0029502.1 mouse_genomes_project 5 42689636 42698579 + MGP_AJ_P0071658 Med28 protein_coding protein_coding MGP_AJ_T0071659.1 MGP_AJ_G0029502.1 mouse_genomes_project 5 42690317 42694903 + Med28 protein_coding processed_transcript MGP_AJ_T0071660.1 MGP_AJ_G0029502.1 mouse_genomes_project 5 42691440 42694476 + Med28 protein_coding retained_intron MGP_AJ_T0071095.1 MGP_AJ_G0029409.1 mouse_genomes_project 5 30340649 30359175 - protein_coding retained_intron MGP_AJ_T0071096.1 MGP_AJ_G0029409.1 mouse_genomes_project 5 30357162 30361408 - protein_coding retained_intron MGP_AJ_T0071097.1 MGP_AJ_G0029409.1 mouse_genomes_project 5 30357163 30359186 - protein_coding retained_intron MGP_AJ_T0071098.1 MGP_AJ_G0029409.1 mouse_genomes_project 5 30357693 30362182 - MGP_AJ_P0071098 protein_coding unknown_likely_coding MGP_AJ_T0071099.1 MGP_AJ_G0029409.1 mouse_genomes_project 5 30359651 30361418 - MGP_AJ_P0071099 protein_coding protein_coding MGP_AJ_T0100066.1 MGP_AJ_G0038032.1 mouse_genomes_project 5 149781384 149781525 - Gm25284 snRNA snRNA MGP_AJ_T0008465.1 MGP_AJ_G0006864.1 mouse_genomes_project 5 148204061 148209862 + Gm15408 lincRNA lincRNA MGP_AJ_T0075024.1 MGP_AJ_G0030152.1 mouse_genomes_project 5 134114632 134117436 - MGP_AJ_P0075024 Ccl26 protein_coding protein_coding MGP_AJ_T0001729.1 MGP_AJ_G0001644.1 mouse_genomes_project 5 96011663 96014573 + TEC TEC MGP_AJ_T0074299.1 MGP_AJ_G0030027.1 mouse_genomes_project 5 121456549 121469907 - MGP_AJ_P0074299 Morn3 protein_coding nonsense_mediated_decay MGP_AJ_T0074300.1 MGP_AJ_G0030027.1 mouse_genomes_project 5 121456569 121460801 - MGP_AJ_P0074300 Morn3 protein_coding protein_coding MGP_AJ_T0074301.1 MGP_AJ_G0030027.1 mouse_genomes_project 5 121456642 121460809 - MGP_AJ_P0074301 Morn3 protein_coding protein_coding MGP_AJ_T0074302.1 MGP_AJ_G0030027.1 mouse_genomes_project 5 121460379 121469666 - MGP_AJ_P0074302 Morn3 protein_coding protein_coding MGP_AJ_T0074303.1 MGP_AJ_G0030027.1 mouse_genomes_project 5 121460401 121469896 - MGP_AJ_P0074303 Morn3 protein_coding nonsense_mediated_decay MGP_AJ_T0014982.1 MGP_AJ_G0013077.1 mouse_genomes_project 5 52909899 52910704 - processed_pseudogene processed_pseudogene MGP_AJ_T0015144.1 MGP_AJ_G0013239.1 mouse_genomes_project 5 119875069 119875402 - processed_pseudogene processed_pseudogene MGP_AJ_T0001561.1 MGP_AJ_G0001479.1 mouse_genomes_project 5 45877456 45881258 - TEC TEC MGP_AJ_T0004772.1 MGP_AJ_G0004120.1 mouse_genomes_project 5 109474387 109475147 - Gm43118 antisense antisense MGP_AJ_T0014906.1 MGP_AJ_G0013001.1 mouse_genomes_project 5 21202984 21203623 + processed_pseudogene processed_pseudogene MGP_AJ_T0014874.1 MGP_AJ_G0012969.1 mouse_genomes_project 5 15733196 15733794 + processed_pseudogene processed_pseudogene MGP_AJ_T0075354.1 MGP_AJ_G0030212.1 mouse_genomes_project 5 136357563 136362321 - MGP_AJ_P0075354 Mepce protein_coding protein_coding MGP_AJ_T0075355.1 MGP_AJ_G0030212.1 mouse_genomes_project 5 136358086 136362373 - MGP_AJ_P0075355 Mepce protein_coding protein_coding MGP_AJ_T0075356.1 MGP_AJ_G0030212.1 mouse_genomes_project 5 136358140 136359008 - Mepce protein_coding retained_intron MGP_AJ_T0075357.1 MGP_AJ_G0030212.1 mouse_genomes_project 5 136358787 136363313 - MGP_AJ_P0075357 Mepce protein_coding protein_coding MGP_AJ_T0075358.1 MGP_AJ_G0030212.1 mouse_genomes_project 5 136360543 136362349 - Mepce protein_coding processed_transcript MGP_AJ_T0073506.1 MGP_AJ_G0029883.1 mouse_genomes_project 5 111613730 111616540 + Wscd2 protein_coding retained_intron MGP_AJ_T0073507.1 MGP_AJ_G0029883.1 mouse_genomes_project 5 111613844 111705206 + MGP_AJ_P0073507 Wscd2 protein_coding protein_coding MGP_AJ_T0073508.1 MGP_AJ_G0029883.1 mouse_genomes_project 5 111614149 111669643 + Wscd2 protein_coding retained_intron MGP_AJ_T0073509.1 MGP_AJ_G0029883.1 mouse_genomes_project 5 111665043 111671568 + Wscd2 protein_coding retained_intron MGP_AJ_T0073510.1 MGP_AJ_G0029883.1 mouse_genomes_project 5 111686393 111705199 + Wscd2 protein_coding processed_transcript MGP_AJ_T0073511.1 MGP_AJ_G0029883.1 mouse_genomes_project 5 111694262 111697348 + Wscd2 protein_coding processed_transcript MGP_AJ_T0073015.1 MGP_AJ_G0029774.1 mouse_genomes_project 5 101861852 101871026 + MGP_AJ_P0073015 Dspp protein_coding protein_coding MGP_AJ_T0004636.1 MGP_AJ_G0004014.1 mouse_genomes_project 5 11393133 11412407 - Gm26918 antisense antisense MGP_AJ_T0075845.1 MGP_AJ_G0030321.1 mouse_genomes_project 5 143690564 143691484 + Trrap protein_coding processed_transcript MGP_AJ_T0075846.1 MGP_AJ_G0030321.1 mouse_genomes_project 5 143690884 143710512 + Trrap protein_coding retained_intron MGP_AJ_T0075847.1 MGP_AJ_G0030321.1 mouse_genomes_project 5 143690947 143784728 + MGP_AJ_P0075847 Trrap protein_coding unknown_likely_coding MGP_AJ_T0075848.1 MGP_AJ_G0030321.1 mouse_genomes_project 5 143691336 143699815 + MGP_AJ_P0075848 Trrap protein_coding protein_coding MGP_AJ_T0075849.1 MGP_AJ_G0030321.1 mouse_genomes_project 5 143691586 143784721 + MGP_AJ_P0075849 Trrap protein_coding protein_coding MGP_AJ_T0075850.1 MGP_AJ_G0030321.1 mouse_genomes_project 5 143693881 143784694 + MGP_AJ_P0075850 Trrap protein_coding protein_coding MGP_AJ_T0075851.1 MGP_AJ_G0030321.1 mouse_genomes_project 5 143693881 143784719 + MGP_AJ_P0075851 Trrap protein_coding protein_coding MGP_AJ_T0075852.1 MGP_AJ_G0030321.1 mouse_genomes_project 5 143708137 143784719 + MGP_AJ_P0075852 Trrap protein_coding protein_coding MGP_AJ_T0075853.1 MGP_AJ_G0030321.1 mouse_genomes_project 5 143716534 143718727 + Trrap protein_coding retained_intron MGP_AJ_T0075854.1 MGP_AJ_G0030321.1 mouse_genomes_project 5 143729762 143759565 + Trrap protein_coding retained_intron MGP_AJ_T0075855.1 MGP_AJ_G0030321.1 mouse_genomes_project 5 143737063 143738815 + Trrap protein_coding retained_intron MGP_AJ_T0075856.1 MGP_AJ_G0030321.1 mouse_genomes_project 5 143744826 143748164 + Trrap protein_coding retained_intron MGP_AJ_T0075857.1 MGP_AJ_G0030321.1 mouse_genomes_project 5 143764035 143765495 + Trrap protein_coding retained_intron MGP_AJ_T0075858.1 MGP_AJ_G0030321.1 mouse_genomes_project 5 143780629 143784720 + Trrap protein_coding retained_intron MGP_AJ_T0075859.1 MGP_AJ_G0030321.1 mouse_genomes_project 5 143782232 143784286 + Trrap protein_coding processed_transcript MGP_AJ_T0070407.1 MGP_AJ_G0029289.1 mouse_genomes_project 5 18727552 18745323 + MGP_AJ_P0070407 Psmc2 protein_coding protein_coding MGP_AJ_T0001709.1 MGP_AJ_G0001624.1 mouse_genomes_project 5 79382692 79384109 - TEC TEC MGP_AJ_T0100041.1 MGP_AJ_G0038007.1 mouse_genomes_project 5 103870311 103870415 - Gm25672 snRNA snRNA MGP_AJ_T0001829.1 MGP_AJ_G0001743.1 mouse_genomes_project 5 125474453 125477840 + TEC TEC MGP_AJ_T0098699.1 MGP_AJ_G0036683.1 mouse_genomes_project 5 118286236 118286345 + n-R5s176 rRNA rRNA MGP_AJ_T0001903.1 MGP_AJ_G0001816.1 mouse_genomes_project 5 147716334 147716980 - TEC TEC MGP_AJ_T0075923.1 MGP_AJ_G0030333.1 mouse_genomes_project 5 144189479 144205206 + MGP_AJ_P0075923 Zfp655 protein_coding protein_coding MGP_AJ_T0075924.1 MGP_AJ_G0030333.1 mouse_genomes_project 5 144189511 144205205 + MGP_AJ_P0075924 Zfp655 protein_coding protein_coding MGP_AJ_T0075925.1 MGP_AJ_G0030333.1 mouse_genomes_project 5 144189512 144195175 + MGP_AJ_P0075925 Zfp655 protein_coding protein_coding MGP_AJ_T0075926.1 MGP_AJ_G0030333.1 mouse_genomes_project 5 144189513 144195045 + MGP_AJ_P0075926 Zfp655 protein_coding protein_coding MGP_AJ_T0075927.1 MGP_AJ_G0030333.1 mouse_genomes_project 5 144191196 144195009 + MGP_AJ_P0075927 Zfp655 protein_coding protein_coding MGP_AJ_T0015024.1 MGP_AJ_G0013119.1 mouse_genomes_project 5 70723522 70724429 - processed_pseudogene processed_pseudogene MGP_AJ_T0014932.1 MGP_AJ_G0013027.1 mouse_genomes_project 5 29622142 29622537 - processed_pseudogene processed_pseudogene MGP_AJ_T0073997.1 MGP_AJ_G0029979.1 mouse_genomes_project 5 119035848 119045473 - MGP_AJ_P0073997 Oas1e protein_coding protein_coding MGP_AJ_T0073998.1 MGP_AJ_G0029979.1 mouse_genomes_project 5 119036063 119045446 - MGP_AJ_P0073998 Oas1e protein_coding protein_coding MGP_AJ_T0073999.1 MGP_AJ_G0029979.1 mouse_genomes_project 5 119038361 119045455 - MGP_AJ_P0073999 Oas1e protein_coding nonsense_mediated_decay MGP_AJ_T0001527.1 MGP_AJ_G0001445.1 mouse_genomes_project 5 40920678 40922039 - TEC TEC MGP_AJ_T0014948.1 MGP_AJ_G0013043.1 mouse_genomes_project 5 34596809 34597289 - processed_pseudogene processed_pseudogene MGP_AJ_T0102023.1 MGP_AJ_G0039829.1 mouse_genomes_project 5 71613896 71615473 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_AJ_T0074175.1 MGP_AJ_G0030010.1 mouse_genomes_project 5 120651841 120679036 - MGP_AJ_P0074175 Tctn1 protein_coding protein_coding MGP_AJ_T0074176.1 MGP_AJ_G0030010.1 mouse_genomes_project 5 120654069 120678945 - MGP_AJ_P0074176 Tctn1 protein_coding unknown_likely_coding MGP_AJ_T0074177.1 MGP_AJ_G0030010.1 mouse_genomes_project 5 120655868 120679036 - MGP_AJ_P0074177 Tctn1 protein_coding nonsense_mediated_decay MGP_AJ_T0074178.1 MGP_AJ_G0030010.1 mouse_genomes_project 5 120660152 120666257 - Tctn1 protein_coding processed_transcript MGP_AJ_T0074179.1 MGP_AJ_G0030010.1 mouse_genomes_project 5 120663021 120669142 - Tctn1 protein_coding retained_intron MGP_AJ_T0074180.1 MGP_AJ_G0030010.1 mouse_genomes_project 5 120666902 120678991 - Tctn1 protein_coding retained_intron MGP_AJ_T0071516.1 MGP_AJ_G0029475.1 mouse_genomes_project 5 35443605 35453083 + MGP_AJ_P0071516 Tmem128 protein_coding protein_coding MGP_AJ_T0071517.1 MGP_AJ_G0029475.1 mouse_genomes_project 5 35443791 35445746 + Tmem128 protein_coding retained_intron MGP_AJ_T0071518.1 MGP_AJ_G0029475.1 mouse_genomes_project 5 35443804 35451360 + MGP_AJ_P0071518 Tmem128 protein_coding protein_coding MGP_AJ_T0071519.1 MGP_AJ_G0029475.1 mouse_genomes_project 5 35443807 35448844 + Tmem128 protein_coding retained_intron MGP_AJ_T0071520.1 MGP_AJ_G0029475.1 mouse_genomes_project 5 35448347 35451357 + MGP_AJ_P0071520 Tmem128 protein_coding protein_coding MGP_AJ_T0001484.1 MGP_AJ_G0001404.1 mouse_genomes_project 5 25187680 25188045 - TEC TEC MGP_AJ_T0010669.1 MGP_AJ_G0008791.1 mouse_genomes_project 5 31055204 31055266 - Mir7024 miRNA miRNA MGP_AJ_T0071661.1 MGP_AJ_G0029503.1 mouse_genomes_project 5 42699006 42706187 - Fam184b protein_coding retained_intron MGP_AJ_T0071662.1 MGP_AJ_G0029503.1 mouse_genomes_project 5 42699006 42815947 - MGP_AJ_P0071662 Fam184b protein_coding protein_coding MGP_AJ_T0011829.1 MGP_AJ_G0009929.1 mouse_genomes_project 5 89829407 89835353 - MGP_AJ_P0011829 polymorphic_pseudogene polymorphic_pseudogene MGP_AJ_T0011830.1 MGP_AJ_G0009929.1 mouse_genomes_project 5 89829410 89833145 - MGP_AJ_P0011830 polymorphic_pseudogene protein_coding MGP_AJ_T0102631.1 MGP_AJ_G0040373.1 mouse_genomes_project 5 65812040 65839684 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0074102.1 MGP_AJ_G0030002.1 mouse_genomes_project 5 120120823 120160491 + Atxn2 protein_coding processed_transcript MGP_AJ_T0074103.1 MGP_AJ_G0030002.1 mouse_genomes_project 5 120121249 120228878 + MGP_AJ_P0074103 Atxn2 protein_coding protein_coding MGP_AJ_T0074104.1 MGP_AJ_G0030002.1 mouse_genomes_project 5 120122619 120186226 + Atxn2 protein_coding processed_transcript MGP_AJ_T0074105.1 MGP_AJ_G0030002.1 mouse_genomes_project 5 120160503 120228877 + MGP_AJ_P0074105 Atxn2 protein_coding protein_coding MGP_AJ_T0074106.1 MGP_AJ_G0030002.1 mouse_genomes_project 5 120191363 120208323 + MGP_AJ_P0074106 Atxn2 protein_coding protein_coding MGP_AJ_T0074107.1 MGP_AJ_G0030002.1 mouse_genomes_project 5 120193624 120196746 + Atxn2 protein_coding retained_intron MGP_AJ_T0074108.1 MGP_AJ_G0030002.1 mouse_genomes_project 5 120197330 120228649 + MGP_AJ_P0074108 Atxn2 protein_coding protein_coding MGP_AJ_T0074109.1 MGP_AJ_G0030002.1 mouse_genomes_project 5 120198497 120208734 + Atxn2 protein_coding retained_intron MGP_AJ_T0074110.1 MGP_AJ_G0030002.1 mouse_genomes_project 5 120210674 120217364 + Atxn2 protein_coding retained_intron MGP_AJ_T0074111.1 MGP_AJ_G0030002.1 mouse_genomes_project 5 120214576 120216194 + Atxn2 protein_coding processed_transcript MGP_AJ_T0074112.1 MGP_AJ_G0030002.1 mouse_genomes_project 5 120215674 120224880 + Atxn2 protein_coding retained_intron MGP_AJ_T0074113.1 MGP_AJ_G0030002.1 mouse_genomes_project 5 120216039 120222985 + Atxn2 protein_coding retained_intron MGP_AJ_T0074114.1 MGP_AJ_G0030002.1 mouse_genomes_project 5 120216158 120228560 + MGP_AJ_P0074114 Atxn2 protein_coding protein_coding MGP_AJ_T0074115.1 MGP_AJ_G0030002.1 mouse_genomes_project 5 120219507 120228662 + Atxn2 protein_coding retained_intron MGP_AJ_T0074116.1 MGP_AJ_G0030002.1 mouse_genomes_project 5 120220173 120227384 + MGP_AJ_P0074116 Atxn2 protein_coding nonsense_mediated_decay MGP_AJ_T0074117.1 MGP_AJ_G0030002.1 mouse_genomes_project 5 120224592 120225462 + Atxn2 protein_coding retained_intron MGP_AJ_T0074118.1 MGP_AJ_G0030002.1 mouse_genomes_project 5 120224893 120225859 + Atxn2 protein_coding retained_intron MGP_AJ_T0074119.1 MGP_AJ_G0030002.1 mouse_genomes_project 5 120225388 120230421 + MGP_AJ_P0074119 Atxn2 protein_coding nonsense_mediated_decay MGP_AJ_T0074120.1 MGP_AJ_G0030002.1 mouse_genomes_project 5 120225435 120228826 + MGP_AJ_P0074120 Atxn2 protein_coding protein_coding MGP_AJ_T0074840.1 MGP_AJ_G0030123.1 mouse_genomes_project 5 132740575 132818710 - MGP_AJ_P0074840 Gtf2i protein_coding protein_coding MGP_AJ_T0074841.1 MGP_AJ_G0030123.1 mouse_genomes_project 5 132740578 132818698 - MGP_AJ_P0074841 Gtf2i protein_coding protein_coding MGP_AJ_T0074842.1 MGP_AJ_G0030123.1 mouse_genomes_project 5 132740583 132798800 - MGP_AJ_P0074842 Gtf2i protein_coding protein_coding MGP_AJ_T0074843.1 MGP_AJ_G0030123.1 mouse_genomes_project 5 132740584 132782356 - Gtf2i protein_coding processed_transcript MGP_AJ_T0074844.1 MGP_AJ_G0030123.1 mouse_genomes_project 5 132740584 132818579 - MGP_AJ_P0074844 Gtf2i protein_coding protein_coding MGP_AJ_T0074845.1 MGP_AJ_G0030123.1 mouse_genomes_project 5 132740584 132818579 - MGP_AJ_P0074845 Gtf2i protein_coding protein_coding MGP_AJ_T0074846.1 MGP_AJ_G0030123.1 mouse_genomes_project 5 132741238 132746309 - MGP_AJ_P0074846 Gtf2i protein_coding protein_coding MGP_AJ_T0074847.1 MGP_AJ_G0030123.1 mouse_genomes_project 5 132741584 132745158 - Gtf2i protein_coding retained_intron MGP_AJ_T0074848.1 MGP_AJ_G0030123.1 mouse_genomes_project 5 132742254 132798800 - MGP_AJ_P0074848 Gtf2i protein_coding protein_coding MGP_AJ_T0074849.1 MGP_AJ_G0030123.1 mouse_genomes_project 5 132742396 132743787 - Gtf2i protein_coding retained_intron MGP_AJ_T0074850.1 MGP_AJ_G0030123.1 mouse_genomes_project 5 132743378 132747493 - Gtf2i protein_coding retained_intron MGP_AJ_T0074851.1 MGP_AJ_G0030123.1 mouse_genomes_project 5 132745498 132746484 - Gtf2i protein_coding retained_intron MGP_AJ_T0074852.1 MGP_AJ_G0030123.1 mouse_genomes_project 5 132758231 132775101 - Gtf2i protein_coding retained_intron MGP_AJ_T0074853.1 MGP_AJ_G0030123.1 mouse_genomes_project 5 132758257 132798750 - MGP_AJ_P0074853 Gtf2i protein_coding protein_coding MGP_AJ_T0074854.1 MGP_AJ_G0030123.1 mouse_genomes_project 5 132760466 132761795 - Gtf2i protein_coding processed_transcript MGP_AJ_T0074855.1 MGP_AJ_G0030123.1 mouse_genomes_project 5 132761560 132768245 - Gtf2i protein_coding processed_transcript MGP_AJ_T0074856.1 MGP_AJ_G0030123.1 mouse_genomes_project 5 132765976 132777506 - Gtf2i protein_coding processed_transcript MGP_AJ_T0074857.1 MGP_AJ_G0030123.1 mouse_genomes_project 5 132789463 132818328 - MGP_AJ_P0074857 Gtf2i protein_coding protein_coding MGP_AJ_T0074858.1 MGP_AJ_G0030123.1 mouse_genomes_project 5 132789494 132815649 - MGP_AJ_P0074858 Gtf2i protein_coding protein_coding MGP_AJ_T0074859.1 MGP_AJ_G0030123.1 mouse_genomes_project 5 132789494 132815944 - MGP_AJ_P0074859 Gtf2i protein_coding nonsense_mediated_decay MGP_AJ_T0074860.1 MGP_AJ_G0030123.1 mouse_genomes_project 5 132789520 132818579 - MGP_AJ_P0074860 Gtf2i protein_coding protein_coding MGP_AJ_T0074861.1 MGP_AJ_G0030123.1 mouse_genomes_project 5 132789574 132818579 - MGP_AJ_P0074861 Gtf2i protein_coding nonsense_mediated_decay MGP_AJ_T0074862.1 MGP_AJ_G0030123.1 mouse_genomes_project 5 132791595 132809663 - Gtf2i protein_coding retained_intron MGP_AJ_T0074863.1 MGP_AJ_G0030123.1 mouse_genomes_project 5 132798202 132800364 - Gtf2i protein_coding retained_intron MGP_AJ_T0008084.1 MGP_AJ_G0006593.1 mouse_genomes_project 5 25479873 25494151 + Gm26894 lincRNA lincRNA MGP_AJ_T0001770.1 MGP_AJ_G0001685.1 mouse_genomes_project 5 112246079 112247932 + TEC TEC MGP_AJ_T0073621.1 MGP_AJ_G0029905.1 mouse_genomes_project 5 112706921 112751694 + MGP_AJ_P0073621 Fam222a protein_coding protein_coding MGP_AJ_T0073622.1 MGP_AJ_G0029905.1 mouse_genomes_project 5 112706922 112733143 + Fam222a protein_coding processed_transcript MGP_AJ_T0074153.1 MGP_AJ_G0030007.1 mouse_genomes_project 5 120522946 120554279 - MGP_AJ_P0074153 Ccdc63 protein_coding protein_coding MGP_AJ_T0074154.1 MGP_AJ_G0030007.1 mouse_genomes_project 5 120522976 120526044 - Ccdc63 protein_coding retained_intron MGP_AJ_T0074155.1 MGP_AJ_G0030007.1 mouse_genomes_project 5 120522991 120551039 - MGP_AJ_P0074155 Ccdc63 protein_coding nonsense_mediated_decay MGP_AJ_T0074156.1 MGP_AJ_G0030007.1 mouse_genomes_project 5 120541453 120548263 - MGP_AJ_P0074156 Ccdc63 protein_coding protein_coding MGP_AJ_T0074157.1 MGP_AJ_G0030007.1 mouse_genomes_project 5 120546157 120548263 - MGP_AJ_P0074157 Ccdc63 protein_coding protein_coding MGP_AJ_T0074158.1 MGP_AJ_G0030007.1 mouse_genomes_project 5 120550660 120555174 - Ccdc63 protein_coding retained_intron MGP_AJ_T0074159.1 MGP_AJ_G0030007.1 mouse_genomes_project 5 120552335 120557033 - Ccdc63 protein_coding retained_intron MGP_AJ_T0015099.1 MGP_AJ_G0013194.1 mouse_genomes_project 5 104425401 104426143 + processed_pseudogene processed_pseudogene MGP_AJ_T0004770.1 MGP_AJ_G0004118.1 mouse_genomes_project 5 108532136 108534094 + Gm42596 antisense antisense MGP_AJ_T0008136.1 MGP_AJ_G0006628.1 mouse_genomes_project 5 42372201 42427325 - Gm43303 lincRNA lincRNA MGP_AJ_T0015176.1 MGP_AJ_G0013271.1 mouse_genomes_project 5 137355705 137356563 + processed_pseudogene processed_pseudogene MGP_AJ_T0008264.1 MGP_AJ_G0006729.1 mouse_genomes_project 5 104176174 104177998 + Gm42916 lincRNA lincRNA MGP_AJ_T0072805.1 MGP_AJ_G0029730.1 mouse_genomes_project 5 93870721 93927884 + MGP_AJ_P0072805 Mrpl1 protein_coding protein_coding MGP_AJ_T0072806.1 MGP_AJ_G0029730.1 mouse_genomes_project 5 93871343 93927866 + MGP_AJ_P0072806 Mrpl1 protein_coding protein_coding MGP_AJ_T0072807.1 MGP_AJ_G0029730.1 mouse_genomes_project 5 93871372 93900914 + MGP_AJ_P0072807 Mrpl1 protein_coding protein_coding MGP_AJ_T0074759.1 MGP_AJ_G0030108.1 mouse_genomes_project 5 128527852 128590273 + MGP_AJ_P0074759 Tpst1 protein_coding protein_coding MGP_AJ_T0074760.1 MGP_AJ_G0030108.1 mouse_genomes_project 5 128533908 128590273 + MGP_AJ_P0074760 Tpst1 protein_coding protein_coding MGP_AJ_T0074761.1 MGP_AJ_G0030108.1 mouse_genomes_project 5 128548225 128556609 + MGP_AJ_P0074761 Tpst1 protein_coding protein_coding MGP_AJ_T0074762.1 MGP_AJ_G0030108.1 mouse_genomes_project 5 128588500 128590256 + Tpst1 protein_coding retained_intron MGP_AJ_T0011614.1 MGP_AJ_G0009736.1 mouse_genomes_project 5 132706114 132706402 + Gm24139 misc_RNA misc_RNA MGP_AJ_T0008089.1 MGP_AJ_G0006597.1 mouse_genomes_project 5 27136932 27142169 + Gm4961 lincRNA lincRNA MGP_AJ_T0015208.1 MGP_AJ_G0013303.1 mouse_genomes_project 5 146266523 146267015 - processed_pseudogene processed_pseudogene MGP_AJ_T0008061.1 MGP_AJ_G0006580.1 mouse_genomes_project 5 19671853 19679809 - A930003O13Rik lincRNA lincRNA MGP_AJ_T0008062.1 MGP_AJ_G0006580.1 mouse_genomes_project 5 19672291 19675388 - A930003O13Rik lincRNA lincRNA MGP_AJ_T0008063.1 MGP_AJ_G0006580.1 mouse_genomes_project 5 19676943 19679829 - A930003O13Rik lincRNA lincRNA MGP_AJ_T0008374.1 MGP_AJ_G0006799.1 mouse_genomes_project 5 122577685 122578841 - Gm16001 lincRNA lincRNA MGP_AJ_T0008375.1 MGP_AJ_G0006799.1 mouse_genomes_project 5 122577714 122578794 - Gm16001 lincRNA lincRNA MGP_AJ_T0100042.1 MGP_AJ_G0038008.1 mouse_genomes_project 5 104485145 104485267 + Gm24191 snRNA snRNA MGP_AJ_T0072879.1 MGP_AJ_G0029749.1 mouse_genomes_project 5 97715420 97744989 + MGP_AJ_P0072879 Enoph1 protein_coding protein_coding MGP_AJ_T0072880.1 MGP_AJ_G0029749.1 mouse_genomes_project 5 97715479 97744989 + MGP_AJ_P0072880 Enoph1 protein_coding protein_coding MGP_AJ_T0072881.1 MGP_AJ_G0029749.1 mouse_genomes_project 5 97715503 97737616 + Enoph1 protein_coding retained_intron MGP_AJ_T0072882.1 MGP_AJ_G0029749.1 mouse_genomes_project 5 97738230 97740427 + Enoph1 protein_coding processed_transcript MGP_AJ_T0072088.1 MGP_AJ_G0029572.1 mouse_genomes_project 5 66813411 66831094 - MGP_AJ_P0072088 Gnpda2 protein_coding nonsense_mediated_decay MGP_AJ_T0072089.1 MGP_AJ_G0029572.1 mouse_genomes_project 5 66815304 66832633 - MGP_AJ_P0072089 Gnpda2 protein_coding protein_coding MGP_AJ_T0072090.1 MGP_AJ_G0029572.1 mouse_genomes_project 5 66815473 66831130 - MGP_AJ_P0072090 Gnpda2 protein_coding protein_coding MGP_AJ_T0072091.1 MGP_AJ_G0029572.1 mouse_genomes_project 5 66815478 66832539 - Gnpda2 protein_coding retained_intron MGP_AJ_T0072092.1 MGP_AJ_G0029572.1 mouse_genomes_project 5 66816115 66832567 - MGP_AJ_P0072092 Gnpda2 protein_coding protein_coding MGP_AJ_T0072093.1 MGP_AJ_G0029572.1 mouse_genomes_project 5 66817045 66832586 - MGP_AJ_P0072093 Gnpda2 protein_coding protein_coding MGP_AJ_T0072094.1 MGP_AJ_G0029572.1 mouse_genomes_project 5 66825302 66832582 - MGP_AJ_P0072094 Gnpda2 protein_coding nonsense_mediated_decay MGP_AJ_T0004871.1 MGP_AJ_G0004188.1 mouse_genomes_project 5 138939901 138952364 + Gm16122 antisense antisense MGP_AJ_T0070514.1 MGP_AJ_G0029308.1 mouse_genomes_project 5 21390992 21396282 - MGP_AJ_P0070514 Cdk5 protein_coding protein_coding MGP_AJ_T0070515.1 MGP_AJ_G0029308.1 mouse_genomes_project 5 21392127 21396237 - MGP_AJ_P0070515 Cdk5 protein_coding protein_coding MGP_AJ_T0070516.1 MGP_AJ_G0029308.1 mouse_genomes_project 5 21393750 21395447 - Cdk5 protein_coding retained_intron MGP_AJ_T0015056.1 MGP_AJ_G0013151.1 mouse_genomes_project 5 85408703 85410561 + processed_pseudogene processed_pseudogene MGP_AJ_T0071960.1 MGP_AJ_G0029553.1 mouse_genomes_project 5 63173765 63208951 + MGP_AJ_P0071960 Chrna9 protein_coding protein_coding MGP_AJ_T0071961.1 MGP_AJ_G0029553.1 mouse_genomes_project 5 63173772 63211029 + MGP_AJ_P0071961 Chrna9 protein_coding protein_coding MGP_AJ_T0071962.1 MGP_AJ_G0029553.1 mouse_genomes_project 5 63173792 63174760 + Chrna9 protein_coding retained_intron MGP_AJ_T0071963.1 MGP_AJ_G0029553.1 mouse_genomes_project 5 63173817 63183277 + Chrna9 protein_coding processed_transcript MGP_AJ_T0071964.1 MGP_AJ_G0029553.1 mouse_genomes_project 5 63173819 63183293 + Chrna9 protein_coding processed_transcript MGP_AJ_T0071965.1 MGP_AJ_G0029553.1 mouse_genomes_project 5 63206792 63217158 + MGP_AJ_P0071965 Chrna9 protein_coding protein_coding MGP_AJ_T0071966.1 MGP_AJ_G0029553.1 mouse_genomes_project 5 63215726 63216972 + Chrna9 protein_coding processed_transcript MGP_AJ_T0075080.1 MGP_AJ_G0030164.1 mouse_genomes_project 5 134556062 134594181 + MGP_AJ_P0075080 Dtx2 protein_coding protein_coding MGP_AJ_T0075081.1 MGP_AJ_G0030164.1 mouse_genomes_project 5 134556073 134594173 + MGP_AJ_P0075081 Dtx2 protein_coding protein_coding MGP_AJ_T0075082.1 MGP_AJ_G0030164.1 mouse_genomes_project 5 134556106 134594180 + MGP_AJ_P0075082 Dtx2 protein_coding protein_coding MGP_AJ_T0075083.1 MGP_AJ_G0030164.1 mouse_genomes_project 5 134556109 134573736 + MGP_AJ_P0075083 Dtx2 protein_coding protein_coding MGP_AJ_T0075084.1 MGP_AJ_G0030164.1 mouse_genomes_project 5 134556120 134594175 + MGP_AJ_P0075084 Dtx2 protein_coding nonsense_mediated_decay MGP_AJ_T0075085.1 MGP_AJ_G0030164.1 mouse_genomes_project 5 134556139 134594173 + MGP_AJ_P0075085 Dtx2 protein_coding protein_coding MGP_AJ_T0075086.1 MGP_AJ_G0030164.1 mouse_genomes_project 5 134556144 134571650 + MGP_AJ_P0075086 Dtx2 protein_coding protein_coding MGP_AJ_T0075087.1 MGP_AJ_G0030164.1 mouse_genomes_project 5 134556368 134557669 + Dtx2 protein_coding processed_transcript MGP_AJ_T0075088.1 MGP_AJ_G0030164.1 mouse_genomes_project 5 134581081 134594173 + Dtx2 protein_coding retained_intron MGP_AJ_T0014860.1 MGP_AJ_G0012955.1 mouse_genomes_project 5 7405193 7406230 + processed_pseudogene processed_pseudogene MGP_AJ_T0015103.1 MGP_AJ_G0013198.1 mouse_genomes_project 5 105315182 105316085 - processed_pseudogene processed_pseudogene MGP_AJ_T0011613.1 MGP_AJ_G0009735.1 mouse_genomes_project 5 131278277 131278556 + Gm25722 misc_RNA misc_RNA MGP_AJ_T0014928.1 MGP_AJ_G0013023.1 mouse_genomes_project 5 27294186 27294553 - processed_pseudogene processed_pseudogene MGP_AJ_T0073002.1 MGP_AJ_G0029770.1 mouse_genomes_project 5 101677436 101710973 - MGP_AJ_P0073002 Hsd17b11 protein_coding protein_coding MGP_AJ_T0073003.1 MGP_AJ_G0029770.1 mouse_genomes_project 5 101690029 101710892 - MGP_AJ_P0073003 Hsd17b11 protein_coding protein_coding MGP_AJ_T0098702.1 MGP_AJ_G0036686.1 mouse_genomes_project 5 147942693 147942811 - n-R5s179 rRNA rRNA MGP_AJ_T0072701.1 MGP_AJ_G0029711.1 mouse_genomes_project 5 89691354 89721511 - MGP_AJ_P0072701 Ppef2 protein_coding protein_coding MGP_AJ_T0072702.1 MGP_AJ_G0029711.1 mouse_genomes_project 5 89691364 89693687 - Ppef2 protein_coding processed_transcript MGP_AJ_T0072703.1 MGP_AJ_G0029711.1 mouse_genomes_project 5 89691649 89718392 - MGP_AJ_P0072703 Ppef2 protein_coding protein_coding MGP_AJ_T0015211.1 MGP_AJ_G0013306.1 mouse_genomes_project 5 146609948 146610170 + processed_pseudogene processed_pseudogene MGP_AJ_T0070483.1 MGP_AJ_G0029301.1 mouse_genomes_project 5 21072128 21132711 + MGP_AJ_P0070483 Klhl7 protein_coding nonsense_mediated_decay MGP_AJ_T0070484.1 MGP_AJ_G0029301.1 mouse_genomes_project 5 21072170 21108617 + Klhl7 protein_coding retained_intron MGP_AJ_T0070485.1 MGP_AJ_G0029301.1 mouse_genomes_project 5 21072277 21135300 + MGP_AJ_P0070485 Klhl7 protein_coding protein_coding MGP_AJ_T0001497.1 MGP_AJ_G0001416.1 mouse_genomes_project 5 29201816 29204717 - TEC TEC MGP_AJ_T0001498.1 MGP_AJ_G0001416.1 mouse_genomes_project 5 29201816 29204714 - TEC TEC MGP_AJ_T0001521.1 MGP_AJ_G0001439.1 mouse_genomes_project 5 38497627 38499292 + TEC TEC MGP_AJ_T0008235.1 MGP_AJ_G0006710.1 mouse_genomes_project 5 97875093 97879206 + Gm9932 lincRNA lincRNA MGP_AJ_T0070168.1 MGP_AJ_G0029241.1 mouse_genomes_project 5 3583132 4161262 - MGP_AJ_P0070168 Zfp804b protein_coding protein_coding MGP_AJ_T0070169.1 MGP_AJ_G0029241.1 mouse_genomes_project 5 3583152 3686512 - MGP_AJ_P0070169 Zfp804b protein_coding protein_coding MGP_AJ_T0008454.1 MGP_AJ_G0006855.1 mouse_genomes_project 5 147135130 147142194 - Gm15721 lincRNA lincRNA MGP_AJ_T0008338.1 MGP_AJ_G0006774.1 mouse_genomes_project 5 115495714 115498648 - BC051077 lincRNA lincRNA MGP_AJ_T0015143.1 MGP_AJ_G0013238.1 mouse_genomes_project 5 119814016 119814838 - processed_pseudogene processed_pseudogene MGP_AJ_T0001714.1 MGP_AJ_G0001629.1 mouse_genomes_project 5 89250948 89251770 - TEC TEC MGP_AJ_T0075096.1 MGP_AJ_G0030167.1 mouse_genomes_project 5 134648134 134677823 + MGP_AJ_P0075096 Rasa4 protein_coding protein_coding MGP_AJ_T0075097.1 MGP_AJ_G0030167.1 mouse_genomes_project 5 134648172 134677823 + Rasa4 protein_coding retained_intron MGP_AJ_T0075098.1 MGP_AJ_G0030167.1 mouse_genomes_project 5 134648216 134677818 + Rasa4 protein_coding retained_intron MGP_AJ_T0075099.1 MGP_AJ_G0030167.1 mouse_genomes_project 5 134648216 134675920 + Rasa4 protein_coding retained_intron MGP_AJ_T0075100.1 MGP_AJ_G0030167.1 mouse_genomes_project 5 134648217 134657858 + Rasa4 protein_coding retained_intron MGP_AJ_T0075101.1 MGP_AJ_G0030167.1 mouse_genomes_project 5 134648236 134677818 + Rasa4 protein_coding retained_intron MGP_AJ_T0075102.1 MGP_AJ_G0030167.1 mouse_genomes_project 5 134648250 134677823 + MGP_AJ_P0075102 Rasa4 protein_coding protein_coding MGP_AJ_T0075103.1 MGP_AJ_G0030167.1 mouse_genomes_project 5 134648307 134673470 + Rasa4 protein_coding retained_intron MGP_AJ_T0075104.1 MGP_AJ_G0030167.1 mouse_genomes_project 5 134649288 134655675 + Rasa4 protein_coding processed_transcript MGP_AJ_T0075105.1 MGP_AJ_G0030167.1 mouse_genomes_project 5 134655512 134656982 + Rasa4 protein_coding retained_intron MGP_AJ_T0075106.1 MGP_AJ_G0030167.1 mouse_genomes_project 5 134660639 134668254 + MGP_AJ_P0075106 Rasa4 protein_coding nonsense_mediated_decay MGP_AJ_T0075107.1 MGP_AJ_G0030167.1 mouse_genomes_project 5 134669852 134671992 + MGP_AJ_P0075107 Rasa4 protein_coding protein_coding MGP_AJ_T0075108.1 MGP_AJ_G0030167.1 mouse_genomes_project 5 134676894 134677493 + Rasa4 protein_coding retained_intron MGP_AJ_T0008335.1 MGP_AJ_G0006772.1 mouse_genomes_project 5 114832207 115020026 - Gm43122 lincRNA lincRNA MGP_AJ_T0008337.1 MGP_AJ_G0006772.1 mouse_genomes_project 5 115007719 115020060 - Gm43122 lincRNA lincRNA MGP_AJ_T0001871.1 MGP_AJ_G0001785.1 mouse_genomes_project 5 131934755 131935677 + TEC TEC MGP_AJ_T0008314.1 MGP_AJ_G0006757.1 mouse_genomes_project 5 110761096 110763838 + Gm42864 lincRNA lincRNA MGP_AJ_T0071809.1 MGP_AJ_G0029525.1 mouse_genomes_project 5 51214358 51340057 + MGP_AJ_P0071809 Stim2 protein_coding protein_coding MGP_AJ_T0071810.1 MGP_AJ_G0029525.1 mouse_genomes_project 5 51214667 51340066 + MGP_AJ_P0071810 Stim2 protein_coding protein_coding MGP_AJ_T0071811.1 MGP_AJ_G0029525.1 mouse_genomes_project 5 51290351 51323498 + Stim2 protein_coding processed_transcript MGP_AJ_T0071812.1 MGP_AJ_G0029525.1 mouse_genomes_project 5 51334856 51337587 + Stim2 protein_coding retained_intron MGP_AJ_T0073298.1 MGP_AJ_G0029844.1 mouse_genomes_project 5 108187527 108207999 + MGP_AJ_P0073298 Zfp605 protein_coding protein_coding MGP_AJ_T0073299.1 MGP_AJ_G0029844.1 mouse_genomes_project 5 108187771 108205665 + Zfp605 protein_coding processed_transcript MGP_AJ_T0073300.1 MGP_AJ_G0029844.1 mouse_genomes_project 5 108187786 108205623 + MGP_AJ_P0073300 Zfp605 protein_coding protein_coding MGP_AJ_T0073301.1 MGP_AJ_G0029844.1 mouse_genomes_project 5 108189487 108207307 + MGP_AJ_P0073301 Zfp605 protein_coding protein_coding MGP_AJ_T0098686.1 MGP_AJ_G0036670.1 mouse_genomes_project 5 19366219 19366332 - n-R5s170 rRNA rRNA MGP_AJ_T0014908.1 MGP_AJ_G0013003.1 mouse_genomes_project 5 22115156 22115722 + processed_pseudogene processed_pseudogene MGP_AJ_T0001894.1 MGP_AJ_G0001807.1 mouse_genomes_project 5 142260256 142261282 + TEC TEC MGP_AJ_T0101813.1 MGP_AJ_G0039719.1 mouse_genomes_project 5 26215110 26215952 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0074616.1 MGP_AJ_G0030079.1 mouse_genomes_project 5 123909012 123950474 + MGP_AJ_P0074616 Aacs protein_coding protein_coding MGP_AJ_T0074617.1 MGP_AJ_G0030079.1 mouse_genomes_project 5 123938301 123945803 + Aacs protein_coding retained_intron MGP_AJ_T0074619.1 MGP_AJ_G0030079.1 mouse_genomes_project 5 123942575 123944961 + Aacs protein_coding retained_intron MGP_AJ_T0074620.1 MGP_AJ_G0030079.1 mouse_genomes_project 5 123945764 123946267 + Aacs protein_coding processed_transcript MGP_AJ_T0074621.1 MGP_AJ_G0030079.1 mouse_genomes_project 5 123947262 123948060 + Aacs protein_coding processed_transcript MGP_AJ_T0074622.1 MGP_AJ_G0030079.1 mouse_genomes_project 5 123948308 123949419 + Aacs protein_coding processed_transcript MGP_AJ_T0071579.1 MGP_AJ_G0029489.1 mouse_genomes_project 5 40829630 40908742 + MGP_AJ_P0071579 Cc2d2a protein_coding protein_coding MGP_AJ_T0071580.1 MGP_AJ_G0029489.1 mouse_genomes_project 5 40839573 40856384 + Cc2d2a protein_coding retained_intron MGP_AJ_T0071581.1 MGP_AJ_G0029489.1 mouse_genomes_project 5 40839573 40907087 + MGP_AJ_P0071581 Cc2d2a protein_coding protein_coding MGP_AJ_T0071582.1 MGP_AJ_G0029489.1 mouse_genomes_project 5 40864234 40885125 + Cc2d2a protein_coding retained_intron MGP_AJ_T0072608.1 MGP_AJ_G0029685.1 mouse_genomes_project 5 87681025 87821945 - MGP_AJ_P0072608 Ankrd17 protein_coding protein_coding MGP_AJ_T0072609.1 MGP_AJ_G0029685.1 mouse_genomes_project 5 87681678 87686324 - Ankrd17 protein_coding retained_intron MGP_AJ_T0072610.1 MGP_AJ_G0029685.1 mouse_genomes_project 5 87682156 87821932 - MGP_AJ_P0072610 Ankrd17 protein_coding protein_coding MGP_AJ_T0072611.1 MGP_AJ_G0029685.1 mouse_genomes_project 5 87682324 87821596 - MGP_AJ_P0072611 Ankrd17 protein_coding protein_coding MGP_AJ_T0072612.1 MGP_AJ_G0029685.1 mouse_genomes_project 5 87682600 87795022 - MGP_AJ_P0072612 Ankrd17 protein_coding protein_coding MGP_AJ_T0072613.1 MGP_AJ_G0029685.1 mouse_genomes_project 5 87690273 87693548 - Ankrd17 protein_coding retained_intron MGP_AJ_T0072614.1 MGP_AJ_G0029685.1 mouse_genomes_project 5 87707146 87759196 - Ankrd17 protein_coding retained_intron MGP_AJ_T0072615.1 MGP_AJ_G0029685.1 mouse_genomes_project 5 87707790 87718115 - Ankrd17 protein_coding retained_intron MGP_AJ_T0072616.1 MGP_AJ_G0029685.1 mouse_genomes_project 5 87714664 87721299 - Ankrd17 protein_coding retained_intron MGP_AJ_T0072617.1 MGP_AJ_G0029685.1 mouse_genomes_project 5 87722017 87730419 - Ankrd17 protein_coding retained_intron MGP_AJ_T0072618.1 MGP_AJ_G0029685.1 mouse_genomes_project 5 87731263 87733543 - Ankrd17 protein_coding retained_intron MGP_AJ_T0072619.1 MGP_AJ_G0029685.1 mouse_genomes_project 5 87747316 87750158 - Ankrd17 protein_coding retained_intron MGP_AJ_T0072620.1 MGP_AJ_G0029685.1 mouse_genomes_project 5 87819462 87821553 - Ankrd17 protein_coding retained_intron MGP_AJ_T0071555.1 MGP_AJ_G0029482.1 mouse_genomes_project 5 36808056 36948076 - MGP_AJ_P0071555 Hs3st1 protein_coding protein_coding MGP_AJ_T0071556.1 MGP_AJ_G0029482.1 mouse_genomes_project 5 36808060 36839090 - MGP_AJ_P0071556 Hs3st1 protein_coding protein_coding MGP_AJ_T0071557.1 MGP_AJ_G0029482.1 mouse_genomes_project 5 36808890 36839702 - MGP_AJ_P0071557 Hs3st1 protein_coding protein_coding MGP_AJ_T0071558.1 MGP_AJ_G0029482.1 mouse_genomes_project 5 36809195 36839053 - MGP_AJ_P0071558 Hs3st1 protein_coding protein_coding MGP_AJ_T0004728.1 MGP_AJ_G0004088.1 mouse_genomes_project 5 79052699 79059215 - Gm16054 antisense antisense MGP_AJ_T0074079.1 MGP_AJ_G0029998.1 mouse_genomes_project 5 119911257 119948216 - MGP_AJ_P0074079 Aldh2 protein_coding protein_coding MGP_AJ_T0074080.1 MGP_AJ_G0029998.1 mouse_genomes_project 5 119913102 119916409 - Aldh2 protein_coding retained_intron MGP_AJ_T0074081.1 MGP_AJ_G0029998.1 mouse_genomes_project 5 119913103 119924887 - MGP_AJ_P0074081 Aldh2 protein_coding protein_coding MGP_AJ_T0074082.1 MGP_AJ_G0029998.1 mouse_genomes_project 5 119913181 119918060 - MGP_AJ_P0074082 Aldh2 protein_coding protein_coding MGP_AJ_T0074083.1 MGP_AJ_G0029998.1 mouse_genomes_project 5 119915537 119947972 - MGP_AJ_P0074083 Aldh2 protein_coding protein_coding MGP_AJ_T0074084.1 MGP_AJ_G0029998.1 mouse_genomes_project 5 119916693 119920349 - Aldh2 protein_coding retained_intron MGP_AJ_T0074085.1 MGP_AJ_G0029998.1 mouse_genomes_project 5 119921678 119947974 - MGP_AJ_P0074085 Aldh2 protein_coding protein_coding MGP_AJ_T0070223.1 MGP_AJ_G0029250.1 mouse_genomes_project 5 5634380 5687963 + MGP_AJ_P0070223 Abcb1b protein_coding nonsense_mediated_decay MGP_AJ_T0070224.1 MGP_AJ_G0029250.1 mouse_genomes_project 5 5634386 5650938 + MGP_AJ_P0070224 Abcb1b protein_coding nonsense_mediated_decay MGP_AJ_T0070225.1 MGP_AJ_G0029250.1 mouse_genomes_project 5 5634419 5704954 + MGP_AJ_P0070225 Abcb1b protein_coding protein_coding MGP_AJ_T0070226.1 MGP_AJ_G0029250.1 mouse_genomes_project 5 5662547 5665017 + Abcb1b protein_coding retained_intron MGP_AJ_T0070227.1 MGP_AJ_G0029250.1 mouse_genomes_project 5 5678617 5692275 + Abcb1b protein_coding processed_transcript MGP_AJ_T0070228.1 MGP_AJ_G0029250.1 mouse_genomes_project 5 5687474 5687963 + Abcb1b protein_coding retained_intron MGP_AJ_T0070229.1 MGP_AJ_G0029250.1 mouse_genomes_project 5 5690035 5692434 + Abcb1b protein_coding retained_intron MGP_AJ_T0070230.1 MGP_AJ_G0029250.1 mouse_genomes_project 5 5690240 5704574 + MGP_AJ_P0070230 Abcb1b protein_coding protein_coding MGP_AJ_T0070231.1 MGP_AJ_G0029250.1 mouse_genomes_project 5 5690508 5693534 + Abcb1b protein_coding retained_intron MGP_AJ_T0011608.1 MGP_AJ_G0009730.1 mouse_genomes_project 5 110317848 110317922 - Gm27882 misc_RNA misc_RNA MGP_AJ_T0001818.1 MGP_AJ_G0001733.1 mouse_genomes_project 5 122138167 122139506 - TEC TEC MGP_AJ_T0001796.1 MGP_AJ_G0001711.1 mouse_genomes_project 5 118994793 118996066 + TEC TEC MGP_AJ_T0099064.1 MGP_AJ_G0037039.1 mouse_genomes_project 5 143273879 143277003 + Dmrt1i sense_intronic sense_intronic MGP_AJ_T0099065.1 MGP_AJ_G0037039.1 mouse_genomes_project 5 143274481 143276960 + Dmrt1i sense_intronic sense_intronic MGP_AJ_T0099066.1 MGP_AJ_G0037039.1 mouse_genomes_project 5 143274481 143276960 + Dmrt1i sense_intronic sense_intronic MGP_AJ_T0074089.1 MGP_AJ_G0030000.1 mouse_genomes_project 5 119999407 120043196 - MGP_AJ_P0074089 protein_coding unknown_likely_coding MGP_AJ_T0074090.1 MGP_AJ_G0030000.1 mouse_genomes_project 5 119999943 120041466 - MGP_AJ_P0074090 protein_coding unknown_likely_coding MGP_AJ_T0074091.1 MGP_AJ_G0030000.1 mouse_genomes_project 5 119999943 120043196 - MGP_AJ_P0074091 protein_coding unknown_likely_coding MGP_AJ_T0074092.1 MGP_AJ_G0030000.1 mouse_genomes_project 5 120014102 120016676 - protein_coding retained_intron MGP_AJ_T0074093.1 MGP_AJ_G0030000.1 mouse_genomes_project 5 120024037 120030667 - protein_coding processed_transcript MGP_AJ_T0004781.1 MGP_AJ_G0004126.1 mouse_genomes_project 5 112916511 112917758 - 4930515G01Rik antisense antisense MGP_AJ_T0072856.1 MGP_AJ_G0029745.1 mouse_genomes_project 5 96969758 97404087 - MGP_AJ_P0072856 protein_coding protein_coding MGP_AJ_T0072857.1 MGP_AJ_G0029745.1 mouse_genomes_project 5 97041594 97404104 - MGP_AJ_P0072857 protein_coding protein_coding MGP_AJ_T0072858.1 MGP_AJ_G0029745.1 mouse_genomes_project 5 97227953 97404107 - protein_coding retained_intron MGP_AJ_T0072859.1 MGP_AJ_G0029745.1 mouse_genomes_project 5 97354756 97403863 - protein_coding processed_transcript MGP_AJ_T0072860.1 MGP_AJ_G0029745.1 mouse_genomes_project 5 97398508 97404098 - MGP_AJ_P0072860 protein_coding protein_coding MGP_AJ_T0008090.1 MGP_AJ_G0006598.1 mouse_genomes_project 5 28634386 28642648 - Gm43660 lincRNA lincRNA MGP_AJ_T0073827.1 MGP_AJ_G0029942.1 mouse_genomes_project 5 114195106 114205994 - MGP_AJ_P0073827 Prkab1 protein_coding protein_coding MGP_AJ_T0073828.1 MGP_AJ_G0029942.1 mouse_genomes_project 5 114195110 114206040 - MGP_AJ_P0073828 Prkab1 protein_coding protein_coding MGP_AJ_T0073829.1 MGP_AJ_G0029942.1 mouse_genomes_project 5 114195687 114196682 - Prkab1 protein_coding retained_intron MGP_AJ_T0073830.1 MGP_AJ_G0029942.1 mouse_genomes_project 5 114195836 114199747 - Prkab1 protein_coding retained_intron MGP_AJ_T0073831.1 MGP_AJ_G0029942.1 mouse_genomes_project 5 114195955 114205888 - MGP_AJ_P0073831 Prkab1 protein_coding nonsense_mediated_decay MGP_AJ_T0073832.1 MGP_AJ_G0029942.1 mouse_genomes_project 5 114196170 114205983 - MGP_AJ_P0073832 Prkab1 protein_coding nonsense_mediated_decay MGP_AJ_T0073833.1 MGP_AJ_G0029942.1 mouse_genomes_project 5 114199350 114205929 - Prkab1 protein_coding retained_intron MGP_AJ_T0073834.1 MGP_AJ_G0029942.1 mouse_genomes_project 5 114201241 114203182 - Prkab1 protein_coding retained_intron MGP_AJ_T0073835.1 MGP_AJ_G0029942.1 mouse_genomes_project 5 114205430 114205991 - Prkab1 protein_coding retained_intron MGP_AJ_T0071225.1 MGP_AJ_G0029429.1 mouse_genomes_project 5 31453398 31483069 + MGP_AJ_P0071225 unknown_likely_coding unknown_likely_coding MGP_AJ_T0072095.1 MGP_AJ_G0029573.1 mouse_genomes_project 5 67984612 68071489 - MGP_AJ_P0072095 Gabrg1 protein_coding protein_coding MGP_AJ_T0072096.1 MGP_AJ_G0029573.1 mouse_genomes_project 5 67985340 68071076 - MGP_AJ_P0072096 Gabrg1 protein_coding protein_coding MGP_AJ_T0072097.1 MGP_AJ_G0029573.1 mouse_genomes_project 5 68000705 68071186 - Gabrg1 protein_coding retained_intron MGP_AJ_T0072098.1 MGP_AJ_G0029573.1 mouse_genomes_project 5 68041745 68071186 - Gabrg1 protein_coding retained_intron MGP_AJ_T0008065.1 MGP_AJ_G0006582.1 mouse_genomes_project 5 20362141 20363634 + 4930580E04Rik lincRNA lincRNA MGP_AJ_T0011831.1 MGP_AJ_G0009930.1 mouse_genomes_project 5 103081553 103108970 - MGP_AJ_P0011831 Gbp11 polymorphic_pseudogene polymorphic_pseudogene MGP_AJ_T0073044.1 MGP_AJ_G0009930.1 mouse_genomes_project 5 103081527 103109101 - MGP_AJ_P0073044 Gbp11 polymorphic_pseudogene unknown_likely_coding MGP_AJ_T0098455.1 MGP_AJ_G0036439.1 mouse_genomes_project 5 114214256 114214427 - pseudogene pseudogene MGP_AJ_T0008428.1 MGP_AJ_G0006832.1 mouse_genomes_project 5 136071278 136078527 + Gm8066 lincRNA lincRNA MGP_AJ_T0001531.1 MGP_AJ_G0001449.1 mouse_genomes_project 5 41118162 41118704 - TEC TEC MGP_AJ_T0070174.1 MGP_AJ_G0029243.1 mouse_genomes_project 5 4752959 4774476 + MGP_AJ_P0070174 Steap4 protein_coding protein_coding MGP_AJ_T0073346.1 MGP_AJ_G0029852.1 mouse_genomes_project 5 108426282 108438377 + Lrcol1 protein_coding retained_intron MGP_AJ_T0073347.1 MGP_AJ_G0029852.1 mouse_genomes_project 5 108426282 108438377 + MGP_AJ_P0073347 Lrcol1 protein_coding nonsense_mediated_decay MGP_AJ_T0073348.1 MGP_AJ_G0029852.1 mouse_genomes_project 5 108426282 108438377 + MGP_AJ_P0073348 Lrcol1 protein_coding protein_coding MGP_AJ_T0073349.1 MGP_AJ_G0029852.1 mouse_genomes_project 5 108436455 108438450 + MGP_AJ_P0073349 Lrcol1 protein_coding protein_coding MGP_AJ_T0073350.1 MGP_AJ_G0029852.1 mouse_genomes_project 5 108436517 108438387 + MGP_AJ_P0073350 Lrcol1 protein_coding nonsense_mediated_decay MGP_AJ_T0015217.1 MGP_AJ_G0013312.1 mouse_genomes_project 5 148878941 148879400 - processed_pseudogene processed_pseudogene MGP_AJ_T0008169.1 MGP_AJ_G0006656.1 mouse_genomes_project 5 69877766 69879909 + 4933408A14Rik lincRNA lincRNA MGP_AJ_T0071786.1 MGP_AJ_G0029522.1 mouse_genomes_project 5 50658064 50846378 + MGP_AJ_P0071786 Rbpj protein_coding protein_coding MGP_AJ_T0071787.1 MGP_AJ_G0029522.1 mouse_genomes_project 5 50747221 50748752 + Rbpj protein_coding retained_intron MGP_AJ_T0071788.1 MGP_AJ_G0029522.1 mouse_genomes_project 5 50747349 50864067 + MGP_AJ_P0071788 Rbpj protein_coding protein_coding MGP_AJ_T0071789.1 MGP_AJ_G0029522.1 mouse_genomes_project 5 50779528 50864071 + MGP_AJ_P0071789 Rbpj protein_coding protein_coding MGP_AJ_T0071790.1 MGP_AJ_G0029522.1 mouse_genomes_project 5 50779682 50864071 + MGP_AJ_P0071790 Rbpj protein_coding protein_coding MGP_AJ_T0071791.1 MGP_AJ_G0029522.1 mouse_genomes_project 5 50779785 50864071 + MGP_AJ_P0071791 Rbpj protein_coding protein_coding MGP_AJ_T0071792.1 MGP_AJ_G0029522.1 mouse_genomes_project 5 50780019 50859561 + MGP_AJ_P0071792 Rbpj protein_coding protein_coding MGP_AJ_T0071793.1 MGP_AJ_G0029522.1 mouse_genomes_project 5 50813687 50838415 + Rbpj protein_coding processed_transcript MGP_AJ_T0071794.1 MGP_AJ_G0029522.1 mouse_genomes_project 5 50819165 50834477 + Rbpj protein_coding processed_transcript MGP_AJ_T0071795.1 MGP_AJ_G0029522.1 mouse_genomes_project 5 50819328 50834477 + Rbpj protein_coding processed_transcript MGP_AJ_T0071796.1 MGP_AJ_G0029522.1 mouse_genomes_project 5 50831073 50834479 + Rbpj protein_coding retained_intron MGP_AJ_T0071797.1 MGP_AJ_G0029522.1 mouse_genomes_project 5 50838173 50849098 + Rbpj protein_coding retained_intron MGP_AJ_T0074573.1 MGP_AJ_G0030071.1 mouse_genomes_project 5 123285299 123311212 + MGP_AJ_P0074573 Zfp664 protein_coding protein_coding MGP_AJ_T0074574.1 MGP_AJ_G0030071.1 mouse_genomes_project 5 123285372 123326358 + Zfp664 protein_coding processed_transcript MGP_AJ_T0074575.1 MGP_AJ_G0030071.1 mouse_genomes_project 5 123285647 123307889 + Zfp664 protein_coding processed_transcript MGP_AJ_T0074576.1 MGP_AJ_G0030071.1 mouse_genomes_project 5 123296757 123298902 + Zfp664 protein_coding processed_transcript MGP_AJ_T0074577.1 MGP_AJ_G0030071.1 mouse_genomes_project 5 123298574 123308059 + Zfp664 protein_coding processed_transcript MGP_AJ_T0074578.1 MGP_AJ_G0030071.1 mouse_genomes_project 5 123307150 123311212 + Zfp664 protein_coding processed_transcript MGP_AJ_T0099068.1 MGP_AJ_G0037041.1 mouse_genomes_project 5 149249086 149249351 + Gm42558 sense_intronic sense_intronic MGP_AJ_T0015021.1 MGP_AJ_G0013116.1 mouse_genomes_project 5 69788197 69788456 + processed_pseudogene processed_pseudogene MGP_AJ_T0074312.1 MGP_AJ_G0030029.1 mouse_genomes_project 5 121536873 121565918 - MGP_AJ_P0074312 Rhof protein_coding nonsense_mediated_decay MGP_AJ_T0074313.1 MGP_AJ_G0030029.1 mouse_genomes_project 5 121536873 121565853 - MGP_AJ_P0074313 Rhof protein_coding protein_coding MGP_AJ_T0074314.1 MGP_AJ_G0030029.1 mouse_genomes_project 5 121544966 121565886 - Rhof protein_coding processed_transcript MGP_AJ_T0074315.1 MGP_AJ_G0030029.1 mouse_genomes_project 5 121551880 121566149 - MGP_AJ_P0074315 Rhof protein_coding protein_coding MGP_AJ_T0075683.1 MGP_AJ_G0030286.1 mouse_genomes_project 5 141652553 141717942 - MGP_AJ_P0075683 protein_coding protein_coding MGP_AJ_T0075684.1 MGP_AJ_G0030286.1 mouse_genomes_project 5 141659996 141664492 - protein_coding processed_transcript MGP_AJ_T0075685.1 MGP_AJ_G0030286.1 mouse_genomes_project 5 141660851 141665035 - protein_coding retained_intron MGP_AJ_T0075686.1 MGP_AJ_G0030286.1 mouse_genomes_project 5 141684527 141747101 - MGP_AJ_P0075686 protein_coding protein_coding MGP_AJ_T0075687.1 MGP_AJ_G0030286.1 mouse_genomes_project 5 141694163 141695871 - protein_coding retained_intron MGP_AJ_T0075688.1 MGP_AJ_G0030286.1 mouse_genomes_project 5 141717727 141729857 - protein_coding processed_transcript MGP_AJ_T0075689.1 MGP_AJ_G0030286.1 mouse_genomes_project 5 141722430 141746819 - MGP_AJ_P0075689 protein_coding protein_coding MGP_AJ_T0008484.1 MGP_AJ_G0006876.1 mouse_genomes_project 5 149733170 149735553 - Gm5 lincRNA lincRNA MGP_AJ_T0008485.1 MGP_AJ_G0006876.1 mouse_genomes_project 5 149733238 149735724 - Gm5 lincRNA lincRNA MGP_AJ_T0074785.1 MGP_AJ_G0030113.1 mouse_genomes_project 5 128711653 128741418 + Tyw1 protein_coding retained_intron MGP_AJ_T0074786.1 MGP_AJ_G0030113.1 mouse_genomes_project 5 128713066 128733781 + MGP_AJ_P0074786 Tyw1 protein_coding protein_coding MGP_AJ_T0074787.1 MGP_AJ_G0030113.1 mouse_genomes_project 5 128713066 128801394 + MGP_AJ_P0074787 Tyw1 protein_coding protein_coding MGP_AJ_T0074788.1 MGP_AJ_G0030113.1 mouse_genomes_project 5 128714964 128725431 + MGP_AJ_P0074788 Tyw1 protein_coding protein_coding MGP_AJ_T0018164.1 MGP_AJ_G0015581.1 mouse_genomes_project 5 71349418 71350679 + Dancr processed_transcript lincRNA MGP_AJ_T0018165.1 MGP_AJ_G0015581.1 mouse_genomes_project 5 71349424 71350678 + Dancr processed_transcript retained_intron MGP_AJ_T0073516.1 MGP_AJ_G0029885.1 mouse_genomes_project 5 111807513 111841409 - MGP_AJ_P0073516 1700069L16Rik protein_coding protein_coding MGP_AJ_T0073517.1 MGP_AJ_G0029885.1 mouse_genomes_project 5 111815363 111820237 - 1700069L16Rik protein_coding processed_transcript MGP_AJ_T0073518.1 MGP_AJ_G0029885.1 mouse_genomes_project 5 111819490 111841386 - MGP_AJ_P0073518 1700069L16Rik protein_coding protein_coding MGP_AJ_T0010730.1 MGP_AJ_G0008852.1 mouse_genomes_project 5 137449034 137449117 + Gm24082 miRNA miRNA MGP_AJ_T0072105.1 MGP_AJ_G0029575.1 mouse_genomes_project 5 68655400 68758804 - protein_coding processed_transcript MGP_AJ_T0072106.1 MGP_AJ_G0029575.1 mouse_genomes_project 5 68655555 68655787 - protein_coding transcribed_processed_pseudogene MGP_AJ_T0101319.1 MGP_AJ_G0039285.1 mouse_genomes_project 5 146368336 146368466 - Gm24556 snoRNA snoRNA MGP_AJ_T0098695.1 MGP_AJ_G0036679.1 mouse_genomes_project 5 89579328 89579435 - Gm24931 rRNA rRNA MGP_AJ_T0001595.1 MGP_AJ_G0001512.1 mouse_genomes_project 5 49311341 49314309 - TEC TEC MGP_AJ_T0001501.1 MGP_AJ_G0001419.1 mouse_genomes_project 5 29680350 29685461 - TEC TEC MGP_AJ_T0004793.1 MGP_AJ_G0004135.1 mouse_genomes_project 5 114624226 114652113 + Srrm4os antisense antisense MGP_AJ_T0004794.1 MGP_AJ_G0004135.1 mouse_genomes_project 5 114624226 114648638 + Srrm4os antisense antisense MGP_AJ_T0099988.1 MGP_AJ_G0037954.1 mouse_genomes_project 5 16431427 16431530 - Gm25335 snRNA snRNA MGP_AJ_T0070088.1 MGP_AJ_G0029230.1 mouse_genomes_project 5 644444 671143 + Akap9 protein_coding retained_intron MGP_AJ_T0070089.1 MGP_AJ_G0029230.1 mouse_genomes_project 5 644568 677358 + MGP_AJ_P0070089 Akap9 protein_coding protein_coding MGP_AJ_T0070090.1 MGP_AJ_G0029230.1 mouse_genomes_project 5 644664 665286 + Akap9 protein_coding retained_intron MGP_AJ_T0070091.1 MGP_AJ_G0029230.1 mouse_genomes_project 5 644664 798898 + MGP_AJ_P0070091 Akap9 protein_coding protein_coding MGP_AJ_T0070092.1 MGP_AJ_G0029230.1 mouse_genomes_project 5 667616 674033 + Akap9 protein_coding processed_transcript MGP_AJ_T0070093.1 MGP_AJ_G0029230.1 mouse_genomes_project 5 667627 668208 + Akap9 protein_coding retained_intron MGP_AJ_T0070094.1 MGP_AJ_G0029230.1 mouse_genomes_project 5 671092 674089 + Akap9 protein_coding retained_intron MGP_AJ_T0070095.1 MGP_AJ_G0029230.1 mouse_genomes_project 5 696535 706067 + Akap9 protein_coding retained_intron MGP_AJ_T0070096.1 MGP_AJ_G0029230.1 mouse_genomes_project 5 700177 701093 + MGP_AJ_P0070096 Akap9 protein_coding protein_coding MGP_AJ_T0070097.1 MGP_AJ_G0029230.1 mouse_genomes_project 5 751677 753839 + Akap9 protein_coding retained_intron MGP_AJ_T0070098.1 MGP_AJ_G0029230.1 mouse_genomes_project 5 776715 778391 + Akap9 protein_coding retained_intron MGP_AJ_T0070099.1 MGP_AJ_G0029230.1 mouse_genomes_project 5 781935 782938 + MGP_AJ_P0070099 Akap9 protein_coding protein_coding MGP_AJ_T0070100.1 MGP_AJ_G0029230.1 mouse_genomes_project 5 782057 782536 + Akap9 protein_coding retained_intron MGP_AJ_T0070101.1 MGP_AJ_G0029230.1 mouse_genomes_project 5 782857 788042 + MGP_AJ_P0070101 Akap9 protein_coding nonsense_mediated_decay MGP_AJ_T0070102.1 MGP_AJ_G0029230.1 mouse_genomes_project 5 785046 785516 + Akap9 protein_coding retained_intron MGP_AJ_T0074658.1 MGP_AJ_G0030089.1 mouse_genomes_project 5 127447769 127471896 - MGP_AJ_P0074658 Stx2 protein_coding protein_coding MGP_AJ_T0074659.1 MGP_AJ_G0030089.1 mouse_genomes_project 5 127447775 127471857 - MGP_AJ_P0074659 Stx2 protein_coding protein_coding MGP_AJ_T0074660.1 MGP_AJ_G0030089.1 mouse_genomes_project 5 127449472 127452488 - Stx2 protein_coding retained_intron MGP_AJ_T0074661.1 MGP_AJ_G0030089.1 mouse_genomes_project 5 127451994 127453179 - Stx2 protein_coding retained_intron MGP_AJ_T0074662.1 MGP_AJ_G0030089.1 mouse_genomes_project 5 127452237 127471745 - Stx2 protein_coding processed_transcript MGP_AJ_T0074663.1 MGP_AJ_G0030089.1 mouse_genomes_project 5 127453971 127471871 - Stx2 protein_coding retained_intron MGP_AJ_T0074664.1 MGP_AJ_G0030089.1 mouse_genomes_project 5 127456825 127471766 - MGP_AJ_P0074664 Stx2 protein_coding nonsense_mediated_decay MGP_AJ_T0074665.1 MGP_AJ_G0030089.1 mouse_genomes_project 5 127456839 127462952 - MGP_AJ_P0074665 Stx2 protein_coding protein_coding MGP_AJ_T0074666.1 MGP_AJ_G0030089.1 mouse_genomes_project 5 127462404 127471868 - Stx2 protein_coding retained_intron MGP_AJ_T0100017.1 MGP_AJ_G0037983.1 mouse_genomes_project 5 67781630 67781737 - Gm26072 snRNA snRNA MGP_AJ_T0001732.1 MGP_AJ_G0001647.1 mouse_genomes_project 5 98511555 98512631 - TEC TEC MGP_AJ_T0070103.1 MGP_AJ_G0029231.1 mouse_genomes_project 5 798731 822404 - MGP_AJ_P0070103 Cyp51 protein_coding protein_coding MGP_AJ_T0070104.1 MGP_AJ_G0029231.1 mouse_genomes_project 5 800854 822001 - Cyp51 protein_coding processed_transcript MGP_AJ_T0070105.1 MGP_AJ_G0029231.1 mouse_genomes_project 5 816933 821039 - Cyp51 protein_coding retained_intron MGP_AJ_T0070106.1 MGP_AJ_G0029231.1 mouse_genomes_project 5 818706 822079 - Cyp51 protein_coding retained_intron MGP_AJ_T0074004.1 MGP_AJ_G0029981.1 mouse_genomes_project 5 119105518 119117626 + MGP_AJ_P0074004 Oas1f protein_coding protein_coding MGP_AJ_T0074005.1 MGP_AJ_G0029981.1 mouse_genomes_project 5 119106521 119117502 + MGP_AJ_P0074005 Oas1f protein_coding nonsense_mediated_decay MGP_AJ_T0102644.1 MGP_AJ_G0040386.1 mouse_genomes_project 5 93500112 93502602 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0001684.1 MGP_AJ_G0001600.1 mouse_genomes_project 5 70152505 70154861 - TEC TEC MGP_AJ_T0001685.1 MGP_AJ_G0001600.1 mouse_genomes_project 5 70154214 70154861 - TEC pseudogene MGP_AJ_T0001670.1 MGP_AJ_G0001586.1 mouse_genomes_project 5 65237758 65241438 + TEC TEC MGP_AJ_T0011591.1 MGP_AJ_G0009713.1 mouse_genomes_project 5 22171047 22171330 - Gm26356 misc_RNA misc_RNA MGP_AJ_T0070107.1 MGP_AJ_G0029232.1 mouse_genomes_project 5 1547406 1551603 - MGP_AJ_P0070107 Fzd1 protein_coding protein_coding MGP_AJ_T0072164.1 MGP_AJ_G0029586.1 mouse_genomes_project 5 70154222 70216172 + MGP_AJ_P0072164 Slain2 protein_coding protein_coding MGP_AJ_T0072165.1 MGP_AJ_G0029586.1 mouse_genomes_project 5 70154287 70216154 + MGP_AJ_P0072165 Slain2 protein_coding protein_coding MGP_AJ_T0072166.1 MGP_AJ_G0029586.1 mouse_genomes_project 5 70154334 70158404 + Slain2 protein_coding retained_intron MGP_AJ_T0072167.1 MGP_AJ_G0029586.1 mouse_genomes_project 5 70154586 70194756 + MGP_AJ_P0072167 Slain2 protein_coding protein_coding MGP_AJ_T0072168.1 MGP_AJ_G0029586.1 mouse_genomes_project 5 70185729 70212045 + Slain2 protein_coding retained_intron MGP_AJ_T0008260.1 MGP_AJ_G0006725.1 mouse_genomes_project 5 103893000 103901260 + Gm32736 lincRNA lincRNA MGP_AJ_T0073026.1 MGP_AJ_G0029779.1 mouse_genomes_project 5 102151800 102202103 + MGP_AJ_P0073026 Pkd2 protein_coding protein_coding MGP_AJ_T0073027.1 MGP_AJ_G0029779.1 mouse_genomes_project 5 102151920 102184799 + Pkd2 protein_coding processed_transcript MGP_AJ_T0073028.1 MGP_AJ_G0029779.1 mouse_genomes_project 5 102187249 102197496 + Pkd2 protein_coding retained_intron MGP_AJ_T0074371.1 MGP_AJ_G0030041.1 mouse_genomes_project 5 122033081 122140659 - MGP_AJ_P0074371 Clip1 protein_coding protein_coding MGP_AJ_T0074372.1 MGP_AJ_G0030041.1 mouse_genomes_project 5 122033081 122140363 - MGP_AJ_P0074372 Clip1 protein_coding protein_coding MGP_AJ_T0074373.1 MGP_AJ_G0030041.1 mouse_genomes_project 5 122033093 122140313 - MGP_AJ_P0074373 Clip1 protein_coding protein_coding MGP_AJ_T0074374.1 MGP_AJ_G0030041.1 mouse_genomes_project 5 122033093 122103990 - MGP_AJ_P0074374 Clip1 protein_coding protein_coding MGP_AJ_T0074375.1 MGP_AJ_G0030041.1 mouse_genomes_project 5 122033104 122059215 - Clip1 protein_coding retained_intron MGP_AJ_T0074376.1 MGP_AJ_G0030041.1 mouse_genomes_project 5 122033153 122033840 - Clip1 protein_coding processed_transcript MGP_AJ_T0074377.1 MGP_AJ_G0030041.1 mouse_genomes_project 5 122034115 122140366 - MGP_AJ_P0074377 Clip1 protein_coding protein_coding MGP_AJ_T0074378.1 MGP_AJ_G0030041.1 mouse_genomes_project 5 122034356 122067557 - Clip1 protein_coding retained_intron MGP_AJ_T0074379.1 MGP_AJ_G0030041.1 mouse_genomes_project 5 122034526 122111992 - MGP_AJ_P0074379 Clip1 protein_coding protein_coding MGP_AJ_T0074380.1 MGP_AJ_G0030041.1 mouse_genomes_project 5 122034733 122073207 - MGP_AJ_P0074380 Clip1 protein_coding protein_coding MGP_AJ_T0074381.1 MGP_AJ_G0030041.1 mouse_genomes_project 5 122041468 122072848 - Clip1 protein_coding retained_intron MGP_AJ_T0074382.1 MGP_AJ_G0030041.1 mouse_genomes_project 5 122045362 122059124 - Clip1 protein_coding retained_intron MGP_AJ_T0074383.1 MGP_AJ_G0030041.1 mouse_genomes_project 5 122073041 122111882 - MGP_AJ_P0074383 Clip1 protein_coding nonsense_mediated_decay MGP_AJ_T0074384.1 MGP_AJ_G0030041.1 mouse_genomes_project 5 122073090 122122618 - MGP_AJ_P0074384 Clip1 protein_coding protein_coding MGP_AJ_T0074385.1 MGP_AJ_G0030041.1 mouse_genomes_project 5 122089346 122092036 - Clip1 protein_coding retained_intron MGP_AJ_T0102019.1 MGP_AJ_G0039826.1 mouse_genomes_project 5 29624860 29631609 + transcribed_unprocessed_pseudogene processed_transcript MGP_AJ_T0102020.1 MGP_AJ_G0039826.1 mouse_genomes_project 5 29624864 29631665 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_AJ_T0004729.1 MGP_AJ_G0004089.1 mouse_genomes_project 5 83992039 84023336 + Gm16579 antisense antisense MGP_AJ_T0075540.1 MGP_AJ_G0030251.1 mouse_genomes_project 5 138214416 138323089 - MGP_AJ_P0075540 3110082I17Rik protein_coding protein_coding MGP_AJ_T0075541.1 MGP_AJ_G0030251.1 mouse_genomes_project 5 138214416 138323114 - MGP_AJ_P0075541 3110082I17Rik protein_coding protein_coding MGP_AJ_T0075542.1 MGP_AJ_G0030251.1 mouse_genomes_project 5 138220303 138323098 - 3110082I17Rik protein_coding retained_intron MGP_AJ_T0075552.1 MGP_AJ_G0030251.1 mouse_genomes_project 5 138274532 138318127 - 3110082I17Rik protein_coding processed_transcript MGP_AJ_T0072107.1 MGP_AJ_G0029576.1 mouse_genomes_project 5 68776729 68865715 - MGP_AJ_P0072107 Gabra4 protein_coding protein_coding MGP_AJ_T0072108.1 MGP_AJ_G0029576.1 mouse_genomes_project 5 68778181 68865388 - MGP_AJ_P0072108 Gabra4 protein_coding protein_coding MGP_AJ_T0072109.1 MGP_AJ_G0029576.1 mouse_genomes_project 5 68778586 68865297 - MGP_AJ_P0072109 Gabra4 protein_coding nonsense_mediated_decay MGP_AJ_T0072110.1 MGP_AJ_G0029576.1 mouse_genomes_project 5 68779035 68865282 - MGP_AJ_P0072110 Gabra4 protein_coding protein_coding MGP_AJ_T0072111.1 MGP_AJ_G0029576.1 mouse_genomes_project 5 68862602 68865227 - Gabra4 protein_coding retained_intron MGP_AJ_T0015007.1 MGP_AJ_G0013102.1 mouse_genomes_project 5 61457050 61457720 - processed_pseudogene processed_pseudogene MGP_AJ_T0001706.1 MGP_AJ_G0001621.1 mouse_genomes_project 5 78525606 78529048 + TEC TEC MGP_AJ_T0018198.1 MGP_AJ_G0015593.1 mouse_genomes_project 5 148144675 148151124 - 1810059H22Rik processed_transcript lincRNA MGP_AJ_T0018199.1 MGP_AJ_G0015593.1 mouse_genomes_project 5 148145593 148147454 - 1810059H22Rik processed_transcript retained_intron MGP_AJ_T0018200.1 MGP_AJ_G0015593.1 mouse_genomes_project 5 148149515 148150618 - 1810059H22Rik processed_transcript lincRNA MGP_AJ_T0018201.1 MGP_AJ_G0015593.1 mouse_genomes_project 5 148149587 148160788 - 1810059H22Rik processed_transcript lincRNA MGP_AJ_T0018202.1 MGP_AJ_G0015593.1 mouse_genomes_project 5 148149806 148150594 - 1810059H22Rik processed_transcript retained_intron MGP_AJ_T0018203.1 MGP_AJ_G0015593.1 mouse_genomes_project 5 148150049 148155192 - 1810059H22Rik processed_transcript retained_intron MGP_AJ_T0018204.1 MGP_AJ_G0015593.1 mouse_genomes_project 5 148154859 148160802 - 1810059H22Rik processed_transcript lincRNA MGP_AJ_T0018205.1 MGP_AJ_G0015593.1 mouse_genomes_project 5 148155678 148161028 - 1810059H22Rik processed_transcript lincRNA MGP_AJ_T0004819.1 MGP_AJ_G0004153.1 mouse_genomes_project 5 121409380 121420503 + A930024E05Rik antisense antisense MGP_AJ_T0071455.1 MGP_AJ_G0029465.1 mouse_genomes_project 5 34432111 34460440 + MGP_AJ_P0071455 Crmp1 protein_coding protein_coding MGP_AJ_T0071456.1 MGP_AJ_G0029465.1 mouse_genomes_project 5 34432256 34483877 + MGP_AJ_P0071456 Crmp1 protein_coding protein_coding MGP_AJ_T0071457.1 MGP_AJ_G0029465.1 mouse_genomes_project 5 34432910 34469894 + MGP_AJ_P0071457 Crmp1 protein_coding protein_coding MGP_AJ_T0071458.1 MGP_AJ_G0029465.1 mouse_genomes_project 5 34435946 34483845 + MGP_AJ_P0071458 Crmp1 protein_coding protein_coding MGP_AJ_T0071459.1 MGP_AJ_G0029465.1 mouse_genomes_project 5 34436027 34457177 + Crmp1 protein_coding retained_intron MGP_AJ_T0071460.1 MGP_AJ_G0029465.1 mouse_genomes_project 5 34437467 34470633 + MGP_AJ_P0071460 Crmp1 protein_coding protein_coding MGP_AJ_T0071461.1 MGP_AJ_G0029465.1 mouse_genomes_project 5 34460395 34468484 + Crmp1 protein_coding retained_intron MGP_AJ_T0071462.1 MGP_AJ_G0029465.1 mouse_genomes_project 5 34471508 34474931 + Crmp1 protein_coding retained_intron MGP_AJ_T0071463.1 MGP_AJ_G0029465.1 mouse_genomes_project 5 34472168 34474439 + Crmp1 protein_coding retained_intron MGP_AJ_T0071464.1 MGP_AJ_G0029465.1 mouse_genomes_project 5 34475632 34478406 + Crmp1 protein_coding retained_intron MGP_AJ_T0072836.1 MGP_AJ_G0029738.1 mouse_genomes_project 5 95846850 95854858 + MGP_AJ_P0072836 Prdm8 protein_coding protein_coding MGP_AJ_T0073171.1 MGP_AJ_G0029812.1 mouse_genomes_project 5 105751006 105831818 - MGP_AJ_P0073171 Fam69a protein_coding protein_coding MGP_AJ_T0073172.1 MGP_AJ_G0029812.1 mouse_genomes_project 5 105752656 105831766 - MGP_AJ_P0073172 Fam69a protein_coding protein_coding MGP_AJ_T0073173.1 MGP_AJ_G0029812.1 mouse_genomes_project 5 105757506 105817402 - MGP_AJ_P0073173 Fam69a protein_coding protein_coding MGP_AJ_T0001701.1 MGP_AJ_G0001616.1 mouse_genomes_project 5 72420575 72421026 - TEC TEC MGP_AJ_T0101834.1 MGP_AJ_G0039734.1 mouse_genomes_project 5 116686063 116702295 + transcribed_processed_pseudogene processed_transcript MGP_AJ_T0101835.1 MGP_AJ_G0039734.1 mouse_genomes_project 5 116701634 116702112 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0001486.1 MGP_AJ_G0001406.1 mouse_genomes_project 5 26281499 26285795 - TEC TEC MGP_AJ_T0071168.1 MGP_AJ_G0029420.1 mouse_genomes_project 5 30893946 30938015 - MGP_AJ_P0071168 Letm1 protein_coding protein_coding MGP_AJ_T0071169.1 MGP_AJ_G0029420.1 mouse_genomes_project 5 30896807 30907800 - Letm1 protein_coding retained_intron MGP_AJ_T0071170.1 MGP_AJ_G0029420.1 mouse_genomes_project 5 30916344 30933846 - MGP_AJ_P0071170 Letm1 protein_coding nonsense_mediated_decay MGP_AJ_T0071171.1 MGP_AJ_G0029420.1 mouse_genomes_project 5 30924560 30937912 - Letm1 protein_coding processed_transcript MGP_AJ_T0071172.1 MGP_AJ_G0029420.1 mouse_genomes_project 5 30924759 30925652 - Letm1 protein_coding processed_transcript MGP_AJ_T0071173.1 MGP_AJ_G0029420.1 mouse_genomes_project 5 30931656 30937935 - MGP_AJ_P0071173 Letm1 protein_coding protein_coding MGP_AJ_T0070377.1 MGP_AJ_G0029282.1 mouse_genomes_project 5 18361811 18418499 + MGP_AJ_P0070377 Fam185a protein_coding protein_coding MGP_AJ_T0070378.1 MGP_AJ_G0029282.1 mouse_genomes_project 5 18361854 18370380 + Fam185a protein_coding retained_intron MGP_AJ_T0070379.1 MGP_AJ_G0029282.1 mouse_genomes_project 5 18370514 18417179 + Fam185a protein_coding processed_transcript MGP_AJ_T0001563.1 MGP_AJ_G0001481.1 mouse_genomes_project 5 45968136 45969369 - TEC TEC MGP_AJ_T0075257.1 MGP_AJ_G0030195.1 mouse_genomes_project 5 136044112 136046909 - MGP_AJ_P0075257 Epo protein_coding protein_coding MGP_AJ_T0075258.1 MGP_AJ_G0030195.1 mouse_genomes_project 5 136044112 136094272 - MGP_AJ_P0075258 Epo protein_coding protein_coding MGP_AJ_T0075259.1 MGP_AJ_G0030195.1 mouse_genomes_project 5 136044118 136046909 - MGP_AJ_P0075259 Epo protein_coding protein_coding MGP_AJ_T0076183.1 MGP_AJ_G0030388.1 mouse_genomes_project 5 150288796 150441518 - MGP_AJ_P0076183 Stard13 protein_coding protein_coding MGP_AJ_T0076184.1 MGP_AJ_G0030388.1 mouse_genomes_project 5 150290823 150441418 - MGP_AJ_P0076184 Stard13 protein_coding protein_coding MGP_AJ_T0076185.1 MGP_AJ_G0030388.1 mouse_genomes_project 5 150314644 150441524 - Stard13 protein_coding processed_transcript MGP_AJ_T0076186.1 MGP_AJ_G0030388.1 mouse_genomes_project 5 150314745 150340457 - Stard13 protein_coding processed_transcript MGP_AJ_T0076188.1 MGP_AJ_G0030388.1 mouse_genomes_project 5 150314748 150484894 - MGP_AJ_P0076188 Stard13 protein_coding protein_coding MGP_AJ_T0076189.1 MGP_AJ_G0030388.1 mouse_genomes_project 5 150314795 150346837 - Stard13 protein_coding processed_transcript MGP_AJ_T0076190.1 MGP_AJ_G0030388.1 mouse_genomes_project 5 150322461 150441474 - Stard13 protein_coding retained_intron MGP_AJ_T0076191.1 MGP_AJ_G0030388.1 mouse_genomes_project 5 150324505 150484956 - MGP_AJ_P0076191 Stard13 protein_coding protein_coding MGP_AJ_T0076192.1 MGP_AJ_G0030388.1 mouse_genomes_project 5 150346510 150359817 - Stard13 protein_coding processed_transcript MGP_AJ_T0010708.1 MGP_AJ_G0008830.1 mouse_genomes_project 5 119110310 119110436 - Gm22907 miRNA miRNA MGP_AJ_T0074463.1 MGP_AJ_G0030054.1 mouse_genomes_project 5 122583182 122584136 + MGP_AJ_P0074463 Arl6ip4 protein_coding protein_coding MGP_AJ_T0074464.1 MGP_AJ_G0030054.1 mouse_genomes_project 5 122583192 122585290 + MGP_AJ_P0074464 Arl6ip4 protein_coding protein_coding MGP_AJ_T0074465.1 MGP_AJ_G0030054.1 mouse_genomes_project 5 122583215 122585190 + MGP_AJ_P0074465 Arl6ip4 protein_coding protein_coding MGP_AJ_T0074466.1 MGP_AJ_G0030054.1 mouse_genomes_project 5 122583772 122585128 + MGP_AJ_P0074466 Arl6ip4 protein_coding protein_coding MGP_AJ_T0074467.1 MGP_AJ_G0030054.1 mouse_genomes_project 5 122584404 122585285 + MGP_AJ_P0074467 Arl6ip4 protein_coding protein_coding MGP_AJ_T0004712.1 MGP_AJ_G0004075.1 mouse_genomes_project 5 64904811 64909193 + Gm15478 antisense antisense MGP_AJ_T0018149.1 MGP_AJ_G0015577.1 mouse_genomes_project 5 61909248 62006819 - Gm20033 processed_transcript antisense MGP_AJ_T0018150.1 MGP_AJ_G0015577.1 mouse_genomes_project 5 61909252 61910017 - Gm20033 processed_transcript retained_intron MGP_AJ_T0018151.1 MGP_AJ_G0015577.1 mouse_genomes_project 5 61909364 61915406 - Gm20033 processed_transcript retained_intron MGP_AJ_T0018152.1 MGP_AJ_G0015577.1 mouse_genomes_project 5 61910856 61922510 - Gm20033 processed_transcript processed_transcript MGP_AJ_T0018153.1 MGP_AJ_G0015577.1 mouse_genomes_project 5 62005079 62006539 - Gm20033 processed_transcript retained_intron MGP_AJ_T0018154.1 MGP_AJ_G0015577.1 mouse_genomes_project 5 62005175 62006818 - Gm20033 processed_transcript antisense MGP_AJ_T0008098.1 MGP_AJ_G0006604.1 mouse_genomes_project 5 31464999 31483272 - Gm43458 lincRNA lincRNA MGP_AJ_T0001596.1 MGP_AJ_G0001513.1 mouse_genomes_project 5 49346943 49348329 - TEC TEC MGP_AJ_T0072649.1 MGP_AJ_G0029696.1 mouse_genomes_project 5 88259454 88268128 + MGP_AJ_P0072649 Cxcl15 protein_coding protein_coding MGP_AJ_T0015086.1 MGP_AJ_G0013181.1 mouse_genomes_project 5 99872236 99873005 + processed_pseudogene processed_pseudogene MGP_AJ_T0001847.1 MGP_AJ_G0001761.1 mouse_genomes_project 5 129515528 129517163 - TEC TEC MGP_AJ_T0001439.1 MGP_AJ_G0001360.1 mouse_genomes_project 5 4077651 4079196 - TEC TEC MGP_AJ_T0001902.1 MGP_AJ_G0001815.1 mouse_genomes_project 5 147375418 147376103 + TEC TEC MGP_AJ_T0073973.1 MGP_AJ_G0029973.1 mouse_genomes_project 5 118858421 118874257 + MGP_AJ_P0073973 Ddx54 protein_coding protein_coding MGP_AJ_T0073974.1 MGP_AJ_G0029973.1 mouse_genomes_project 5 118858809 118873292 + Ddx54 protein_coding retained_intron MGP_AJ_T0073975.1 MGP_AJ_G0029973.1 mouse_genomes_project 5 118864586 118867481 + Ddx54 protein_coding retained_intron MGP_AJ_T0073976.1 MGP_AJ_G0029973.1 mouse_genomes_project 5 118867009 118867480 + Ddx54 protein_coding retained_intron MGP_AJ_T0004787.1 MGP_AJ_G0004130.1 mouse_genomes_project 5 113604426 113605005 - 4930430O22Rik antisense antisense MGP_AJ_T0004788.1 MGP_AJ_G0004130.1 mouse_genomes_project 5 113604428 113604967 - 4930430O22Rik antisense antisense MGP_AJ_T0001679.1 MGP_AJ_G0001595.1 mouse_genomes_project 5 66553132 66557493 - TEC TEC MGP_AJ_T0010660.1 MGP_AJ_G0008782.1 mouse_genomes_project 5 4692131 4692240 + Gm22196 miRNA miRNA MGP_AJ_T0072515.1 MGP_AJ_G0029657.1 mouse_genomes_project 5 85027126 85034133 - MGP_AJ_P0072515 Csn2 protein_coding protein_coding MGP_AJ_T0072516.1 MGP_AJ_G0029657.1 mouse_genomes_project 5 85027127 85033912 - Csn2 protein_coding retained_intron MGP_AJ_T0072517.1 MGP_AJ_G0029657.1 mouse_genomes_project 5 85027130 85031159 - Csn2 protein_coding retained_intron MGP_AJ_T0072518.1 MGP_AJ_G0029657.1 mouse_genomes_project 5 85027130 85033928 - MGP_AJ_P0072518 Csn2 protein_coding protein_coding MGP_AJ_T0072519.1 MGP_AJ_G0029657.1 mouse_genomes_project 5 85027307 85033912 - MGP_AJ_P0072519 Csn2 protein_coding protein_coding MGP_AJ_T0072520.1 MGP_AJ_G0029657.1 mouse_genomes_project 5 85027371 85033924 - MGP_AJ_P0072520 Csn2 protein_coding protein_coding MGP_AJ_T0072521.1 MGP_AJ_G0029657.1 mouse_genomes_project 5 85027431 85033924 - MGP_AJ_P0072521 Csn2 protein_coding protein_coding MGP_AJ_T0072522.1 MGP_AJ_G0029657.1 mouse_genomes_project 5 85028338 85032595 - MGP_AJ_P0072522 Csn2 protein_coding protein_coding MGP_AJ_T0072523.1 MGP_AJ_G0029657.1 mouse_genomes_project 5 85029066 85031034 - Csn2 protein_coding processed_transcript MGP_AJ_T0072524.1 MGP_AJ_G0029657.1 mouse_genomes_project 5 85032311 85033924 - Csn2 protein_coding retained_intron MGP_AJ_T0072525.1 MGP_AJ_G0029657.1 mouse_genomes_project 5 85032395 85033924 - Csn2 protein_coding retained_intron MGP_AJ_T0098844.1 MGP_AJ_G0036828.1 mouse_genomes_project 5 1779559 1779687 - Gm22897 scaRNA scaRNA MGP_AJ_T0099054.1 MGP_AJ_G0037031.1 mouse_genomes_project 5 127229968 127230998 - Gm42871 sense_intronic sense_intronic MGP_AJ_T0075914.1 MGP_AJ_G0030331.1 mouse_genomes_project 5 144152997 144159733 - MGP_AJ_P0075914 Zkscan14 protein_coding protein_coding MGP_AJ_T0075915.1 MGP_AJ_G0030331.1 mouse_genomes_project 5 144153674 144159722 - MGP_AJ_P0075915 Zkscan14 protein_coding protein_coding MGP_AJ_T0075916.1 MGP_AJ_G0030331.1 mouse_genomes_project 5 144157490 144159733 - MGP_AJ_P0075916 Zkscan14 protein_coding protein_coding MGP_AJ_T0008228.1 MGP_AJ_G0006704.1 mouse_genomes_project 5 96708942 96840967 - Gm43251 lincRNA lincRNA MGP_AJ_T0008206.1 MGP_AJ_G0006685.1 mouse_genomes_project 5 86264545 86283837 + Gm42912 lincRNA lincRNA MGP_AJ_T0015202.1 MGP_AJ_G0013297.1 mouse_genomes_project 5 144988784 144988944 + processed_pseudogene processed_pseudogene MGP_AJ_T0073893.1 MGP_AJ_G0029955.1 mouse_genomes_project 5 116166194 116199577 + MGP_AJ_P0073893 Fbxo21 protein_coding protein_coding MGP_AJ_T0073894.1 MGP_AJ_G0029955.1 mouse_genomes_project 5 116166238 116177054 + Fbxo21 protein_coding retained_intron MGP_AJ_T0073895.1 MGP_AJ_G0029955.1 mouse_genomes_project 5 116166248 116199576 + MGP_AJ_P0073895 Fbxo21 protein_coding protein_coding MGP_AJ_T0073896.1 MGP_AJ_G0029955.1 mouse_genomes_project 5 116166292 116199578 + MGP_AJ_P0073896 Fbxo21 protein_coding protein_coding MGP_AJ_T0073897.1 MGP_AJ_G0029955.1 mouse_genomes_project 5 116166778 116175707 + Fbxo21 protein_coding processed_transcript MGP_AJ_T0073898.1 MGP_AJ_G0029955.1 mouse_genomes_project 5 116168802 116175593 + Fbxo21 protein_coding processed_transcript MGP_AJ_T0001704.1 MGP_AJ_G0001619.1 mouse_genomes_project 5 73547392 73551568 - TEC TEC MGP_AJ_T0004774.1 MGP_AJ_G0004122.1 mouse_genomes_project 5 110910273 110918640 + 1700095B10Rik antisense antisense MGP_AJ_T0004775.1 MGP_AJ_G0004122.1 mouse_genomes_project 5 110910281 110912646 + 1700095B10Rik antisense antisense MGP_AJ_T0004776.1 MGP_AJ_G0004122.1 mouse_genomes_project 5 110910290 110918588 + 1700095B10Rik antisense antisense MGP_AJ_T0004777.1 MGP_AJ_G0004122.1 mouse_genomes_project 5 110910313 110912897 + 1700095B10Rik antisense antisense MGP_AJ_T0008192.1 MGP_AJ_G0006674.1 mouse_genomes_project 5 74379834 74385782 - Gm15831 lincRNA lincRNA MGP_AJ_T0001634.1 MGP_AJ_G0001550.1 mouse_genomes_project 5 62698026 62699578 - TEC TEC MGP_AJ_T0098692.1 MGP_AJ_G0036676.1 mouse_genomes_project 5 62357299 62357418 + Gm25154 rRNA rRNA MGP_AJ_T0008434.1 MGP_AJ_G0006838.1 mouse_genomes_project 5 139425874 139426781 - Gm42808 lincRNA lincRNA MGP_AJ_T0015185.1 MGP_AJ_G0013280.1 mouse_genomes_project 5 141782244 141782828 - processed_pseudogene processed_pseudogene MGP_AJ_T0071741.1 MGP_AJ_G0029514.1 mouse_genomes_project 5 49723124 49755912 - MGP_AJ_P0071741 Lgi2 protein_coding protein_coding MGP_AJ_T0071742.1 MGP_AJ_G0029514.1 mouse_genomes_project 5 49723124 49756072 - MGP_AJ_P0071742 Lgi2 protein_coding protein_coding MGP_AJ_T0075264.1 MGP_AJ_G0030198.1 mouse_genomes_project 5 136089157 136091783 - MGP_AJ_P0075264 Gnb2 protein_coding protein_coding MGP_AJ_T0075265.1 MGP_AJ_G0030198.1 mouse_genomes_project 5 136089159 136089952 - Gnb2 protein_coding retained_intron MGP_AJ_T0075266.1 MGP_AJ_G0030198.1 mouse_genomes_project 5 136089188 136092790 - MGP_AJ_P0075266 Gnb2 protein_coding protein_coding MGP_AJ_T0075267.1 MGP_AJ_G0030198.1 mouse_genomes_project 5 136089534 136094214 - MGP_AJ_P0075267 Gnb2 protein_coding protein_coding MGP_AJ_T0075268.1 MGP_AJ_G0030198.1 mouse_genomes_project 5 136089596 136091931 - Gnb2 protein_coding retained_intron MGP_AJ_T0075269.1 MGP_AJ_G0030198.1 mouse_genomes_project 5 136089803 136090894 - Gnb2 protein_coding retained_intron MGP_AJ_T0075270.1 MGP_AJ_G0030198.1 mouse_genomes_project 5 136089827 136090852 - Gnb2 protein_coding retained_intron MGP_AJ_T0075271.1 MGP_AJ_G0030198.1 mouse_genomes_project 5 136089904 136090808 - Gnb2 protein_coding retained_intron MGP_AJ_T0075272.1 MGP_AJ_G0030198.1 mouse_genomes_project 5 136090051 136092070 - MGP_AJ_P0075272 Gnb2 protein_coding protein_coding MGP_AJ_T0075273.1 MGP_AJ_G0030198.1 mouse_genomes_project 5 136090169 136092984 - MGP_AJ_P0075273 Gnb2 protein_coding protein_coding MGP_AJ_T0073010.1 MGP_AJ_G0029772.1 mouse_genomes_project 5 101759782 101767895 - MGP_AJ_P0073010 Gm17660 protein_coding protein_coding MGP_AJ_T0073011.1 MGP_AJ_G0029772.1 mouse_genomes_project 5 101759808 101767879 - MGP_AJ_P0073011 Gm17660 protein_coding protein_coding MGP_AJ_T0073012.1 MGP_AJ_G0029772.1 mouse_genomes_project 5 101760967 101767895 - MGP_AJ_P0073012 Gm17660 protein_coding protein_coding MGP_AJ_T0014875.1 MGP_AJ_G0012970.1 mouse_genomes_project 5 16120509 16120750 + processed_pseudogene processed_pseudogene MGP_AJ_T0008074.1 MGP_AJ_G0006588.1 mouse_genomes_project 5 22509723 22511177 + 1700096K18Rik lincRNA lincRNA MGP_AJ_T0075139.1 MGP_AJ_G0030174.1 mouse_genomes_project 5 134810439 135135219 - MGP_AJ_P0075139 Cux1 protein_coding protein_coding MGP_AJ_T0075140.1 MGP_AJ_G0030174.1 mouse_genomes_project 5 134810439 134924367 - MGP_AJ_P0075140 Cux1 protein_coding protein_coding MGP_AJ_T0075141.1 MGP_AJ_G0030174.1 mouse_genomes_project 5 134810439 135135203 - MGP_AJ_P0075141 Cux1 protein_coding protein_coding MGP_AJ_T0075142.1 MGP_AJ_G0030174.1 mouse_genomes_project 5 134810814 135135233 - MGP_AJ_P0075142 Cux1 protein_coding nonsense_mediated_decay MGP_AJ_T0075143.1 MGP_AJ_G0030174.1 mouse_genomes_project 5 134812725 135135218 - MGP_AJ_P0075143 Cux1 protein_coding nonsense_mediated_decay MGP_AJ_T0075144.1 MGP_AJ_G0030174.1 mouse_genomes_project 5 134828142 135135400 - MGP_AJ_P0075144 Cux1 protein_coding protein_coding MGP_AJ_T0075145.1 MGP_AJ_G0030174.1 mouse_genomes_project 5 134830094 135135201 - MGP_AJ_P0075145 Cux1 protein_coding protein_coding MGP_AJ_T0075146.1 MGP_AJ_G0030174.1 mouse_genomes_project 5 134836182 135134291 - MGP_AJ_P0075146 Cux1 protein_coding protein_coding MGP_AJ_T0075147.1 MGP_AJ_G0030174.1 mouse_genomes_project 5 134836213 135133372 - MGP_AJ_P0075147 Cux1 protein_coding protein_coding MGP_AJ_T0075148.1 MGP_AJ_G0030174.1 mouse_genomes_project 5 134836220 134864193 - Cux1 protein_coding processed_transcript MGP_AJ_T0075149.1 MGP_AJ_G0030174.1 mouse_genomes_project 5 134836518 135135174 - MGP_AJ_P0075149 Cux1 protein_coding protein_coding MGP_AJ_T0075150.1 MGP_AJ_G0030174.1 mouse_genomes_project 5 134874800 134928358 - MGP_AJ_P0075150 Cux1 protein_coding protein_coding MGP_AJ_T0075151.1 MGP_AJ_G0030174.1 mouse_genomes_project 5 134927388 135135207 - Cux1 protein_coding retained_intron MGP_AJ_T0075152.1 MGP_AJ_G0030174.1 mouse_genomes_project 5 135049711 135135445 - Cux1 protein_coding retained_intron MGP_AJ_T0001480.1 MGP_AJ_G0001400.1 mouse_genomes_project 5 22673559 22675582 - TEC TEC MGP_AJ_T0072563.1 MGP_AJ_G0029673.1 mouse_genomes_project 5 85949098 85965787 + MGP_AJ_P0072563 Enam protein_coding protein_coding MGP_AJ_T0072564.1 MGP_AJ_G0029673.1 mouse_genomes_project 5 85949105 85967106 + MGP_AJ_P0072564 Enam protein_coding protein_coding MGP_AJ_T0004692.1 MGP_AJ_G0004058.1 mouse_genomes_project 5 42815045 42820108 + 9630001P10Rik antisense antisense MGP_AJ_T0004693.1 MGP_AJ_G0004058.1 mouse_genomes_project 5 42815619 42821809 + 9630001P10Rik antisense antisense MGP_AJ_T0004694.1 MGP_AJ_G0004058.1 mouse_genomes_project 5 42815713 42820431 + 9630001P10Rik antisense antisense MGP_AJ_T0015018.1 MGP_AJ_G0013113.1 mouse_genomes_project 5 69252077 69252848 - processed_pseudogene processed_pseudogene MGP_AJ_T0014933.1 MGP_AJ_G0013028.1 mouse_genomes_project 5 29977902 29978188 + processed_pseudogene processed_pseudogene MGP_AJ_T0070387.1 MGP_AJ_G0029285.1 mouse_genomes_project 5 18584410 18600360 + MGP_AJ_P0070387 Armc10 protein_coding protein_coding MGP_AJ_T0070388.1 MGP_AJ_G0029285.1 mouse_genomes_project 5 18584476 18601438 + MGP_AJ_P0070388 Armc10 protein_coding protein_coding MGP_AJ_T0070389.1 MGP_AJ_G0029285.1 mouse_genomes_project 5 18584614 18587265 + Armc10 protein_coding processed_transcript MGP_AJ_T0070390.1 MGP_AJ_G0029285.1 mouse_genomes_project 5 18584650 18601352 + MGP_AJ_P0070390 Armc10 protein_coding protein_coding MGP_AJ_T0070391.1 MGP_AJ_G0029285.1 mouse_genomes_project 5 18587114 18590616 + Armc10 protein_coding retained_intron MGP_AJ_T0010698.1 MGP_AJ_G0008820.1 mouse_genomes_project 5 104708330 104708429 - Gm27527 miRNA miRNA MGP_AJ_T0004814.1 MGP_AJ_G0004148.1 mouse_genomes_project 5 120127319 120136867 - Gm16552 antisense antisense MGP_AJ_T0014939.1 MGP_AJ_G0013034.1 mouse_genomes_project 5 30914401 30914572 + processed_pseudogene processed_pseudogene MGP_AJ_T0102630.1 MGP_AJ_G0040372.1 mouse_genomes_project 5 55554566 55557074 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0073281.1 MGP_AJ_G0029840.1 mouse_genomes_project 5 107650882 107670261 - MGP_AJ_P0073281 5430403G16Rik protein_coding protein_coding MGP_AJ_T0073541.1 MGP_AJ_G0029891.1 mouse_genomes_project 5 111964590 112032064 - MGP_AJ_P0073541 Coro1c protein_coding nonsense_mediated_decay MGP_AJ_T0073542.1 MGP_AJ_G0029891.1 mouse_genomes_project 5 111964590 112032117 - MGP_AJ_P0073542 Coro1c protein_coding protein_coding MGP_AJ_T0073543.1 MGP_AJ_G0029891.1 mouse_genomes_project 5 111967385 111972983 - Coro1c protein_coding retained_intron MGP_AJ_T0073544.1 MGP_AJ_G0029891.1 mouse_genomes_project 5 111967396 111971993 - Coro1c protein_coding retained_intron MGP_AJ_T0073545.1 MGP_AJ_G0029891.1 mouse_genomes_project 5 111968331 111969764 - Coro1c protein_coding retained_intron MGP_AJ_T0073546.1 MGP_AJ_G0029891.1 mouse_genomes_project 5 111970251 111971798 - Coro1c protein_coding retained_intron MGP_AJ_T0073547.1 MGP_AJ_G0029891.1 mouse_genomes_project 5 111970668 111997823 - Coro1c protein_coding processed_transcript MGP_AJ_T0073548.1 MGP_AJ_G0029891.1 mouse_genomes_project 5 111970727 111980943 - Coro1c protein_coding processed_transcript MGP_AJ_T0073549.1 MGP_AJ_G0029891.1 mouse_genomes_project 5 111987880 112005993 - MGP_AJ_P0073549 Coro1c protein_coding protein_coding MGP_AJ_T0073550.1 MGP_AJ_G0029891.1 mouse_genomes_project 5 111987938 112005479 - MGP_AJ_P0073550 Coro1c protein_coding protein_coding MGP_AJ_T0073551.1 MGP_AJ_G0029891.1 mouse_genomes_project 5 112000137 112032004 - Coro1c protein_coding retained_intron MGP_AJ_T0075966.1 MGP_AJ_G0030351.1 mouse_genomes_project 5 145898539 145953640 - MGP_AJ_P0075966 Usp12 protein_coding protein_coding MGP_AJ_T0075967.1 MGP_AJ_G0030351.1 mouse_genomes_project 5 145898569 145917547 - Usp12 protein_coding processed_transcript MGP_AJ_T0075968.1 MGP_AJ_G0030351.1 mouse_genomes_project 5 145905461 145917555 - Usp12 protein_coding processed_transcript MGP_AJ_T0015129.1 MGP_AJ_G0013224.1 mouse_genomes_project 5 112369482 112370528 - processed_pseudogene processed_pseudogene MGP_AJ_T0074215.1 MGP_AJ_G0030018.1 mouse_genomes_project 5 120862591 120911320 - MGP_AJ_P0074215 Atp2a2 protein_coding unknown_likely_coding MGP_AJ_T0074216.1 MGP_AJ_G0030018.1 mouse_genomes_project 5 120862591 120911809 - MGP_AJ_P0074216 Atp2a2 protein_coding nonsense_mediated_decay MGP_AJ_T0074217.1 MGP_AJ_G0030018.1 mouse_genomes_project 5 120862592 120911530 - MGP_AJ_P0074217 Atp2a2 protein_coding protein_coding MGP_AJ_T0074218.1 MGP_AJ_G0030018.1 mouse_genomes_project 5 120865418 120911860 - MGP_AJ_P0074218 Atp2a2 protein_coding protein_coding MGP_AJ_T0074219.1 MGP_AJ_G0030018.1 mouse_genomes_project 5 120898522 120911256 - Atp2a2 protein_coding processed_transcript MGP_AJ_T0074220.1 MGP_AJ_G0030018.1 mouse_genomes_project 5 120898575 120911252 - Atp2a2 protein_coding retained_intron MGP_AJ_T0008390.1 MGP_AJ_G0006807.1 mouse_genomes_project 5 125180260 125183225 - Gm43754 lincRNA lincRNA MGP_AJ_T0075578.1 MGP_AJ_G0030260.1 mouse_genomes_project 5 138668632 138679371 - MGP_AJ_P0075578 Tmem184a protein_coding protein_coding MGP_AJ_T0075579.1 MGP_AJ_G0030260.1 mouse_genomes_project 5 138671099 138680371 - MGP_AJ_P0075579 Tmem184a protein_coding protein_coding MGP_AJ_T0075580.1 MGP_AJ_G0030260.1 mouse_genomes_project 5 138673414 138674128 - Tmem184a protein_coding retained_intron MGP_AJ_T0075582.1 MGP_AJ_G0030260.1 mouse_genomes_project 5 138674637 138680130 - MGP_AJ_P0075582 Tmem184a protein_coding protein_coding MGP_AJ_T0075583.1 MGP_AJ_G0030260.1 mouse_genomes_project 5 138679135 138686545 - MGP_AJ_P0075583 Tmem184a protein_coding protein_coding MGP_AJ_T0072526.1 MGP_AJ_G0029658.1 mouse_genomes_project 5 85115583 85129821 + MGP_AJ_P0072526 Csn1s2a protein_coding protein_coding MGP_AJ_T0072527.1 MGP_AJ_G0029658.1 mouse_genomes_project 5 85115583 85129821 + MGP_AJ_P0072527 Csn1s2a protein_coding protein_coding MGP_AJ_T0072528.1 MGP_AJ_G0029658.1 mouse_genomes_project 5 85115583 85129722 + MGP_AJ_P0072528 Csn1s2a protein_coding protein_coding MGP_AJ_T0072529.1 MGP_AJ_G0029658.1 mouse_genomes_project 5 85115597 85129722 + MGP_AJ_P0072529 Csn1s2a protein_coding protein_coding MGP_AJ_T0072530.1 MGP_AJ_G0029658.1 mouse_genomes_project 5 85115598 85121601 + Csn1s2a protein_coding retained_intron MGP_AJ_T0072531.1 MGP_AJ_G0029658.1 mouse_genomes_project 5 85116800 85119822 + Csn1s2a protein_coding retained_intron MGP_AJ_T0072532.1 MGP_AJ_G0029658.1 mouse_genomes_project 5 85118479 85121413 + Csn1s2a protein_coding retained_intron MGP_AJ_T0072533.1 MGP_AJ_G0029658.1 mouse_genomes_project 5 85120622 85122909 + Csn1s2a protein_coding retained_intron MGP_AJ_T0072534.1 MGP_AJ_G0029658.1 mouse_genomes_project 5 85122879 85129800 + Csn1s2a protein_coding retained_intron MGP_AJ_T0072535.1 MGP_AJ_G0029658.1 mouse_genomes_project 5 85126183 85128120 + Csn1s2a protein_coding retained_intron MGP_AJ_T0073040.1 MGP_AJ_G0029787.1 mouse_genomes_project 5 102767224 102792478 - MGP_AJ_P0073040 Gbp4 protein_coding nonsense_mediated_decay MGP_AJ_T0073041.1 MGP_AJ_G0029787.1 mouse_genomes_project 5 102767224 102792478 - MGP_AJ_P0073041 Gbp4 protein_coding protein_coding MGP_AJ_T0071407.1 MGP_AJ_G0029457.1 mouse_genomes_project 5 33678438 33682025 + MGP_AJ_P0071407 Ccdc96 protein_coding protein_coding MGP_AJ_T0074570.1 MGP_AJ_G0030070.1 mouse_genomes_project 5 123256105 123285033 - MGP_AJ_P0074570 Ccdc92 protein_coding protein_coding MGP_AJ_T0074571.1 MGP_AJ_G0030070.1 mouse_genomes_project 5 123257580 123284494 - MGP_AJ_P0074571 Ccdc92 protein_coding nonsense_mediated_decay MGP_AJ_T0074572.1 MGP_AJ_G0030070.1 mouse_genomes_project 5 123257756 123274191 - MGP_AJ_P0074572 Ccdc92 protein_coding protein_coding MGP_AJ_T0101811.1 MGP_AJ_G0039718.1 mouse_genomes_project 5 21621021 21624782 + transcribed_processed_pseudogene processed_transcript MGP_AJ_T0101812.1 MGP_AJ_G0039718.1 mouse_genomes_project 5 21623605 21624656 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0001711.1 MGP_AJ_G0001626.1 mouse_genomes_project 5 86976450 86978591 + TEC TEC MGP_AJ_T0098696.1 MGP_AJ_G0036680.1 mouse_genomes_project 5 105237347 105237466 + n-R5s173 rRNA rRNA MGP_AJ_T0072204.1 MGP_AJ_G0029593.1 mouse_genomes_project 5 70659158 70707926 + MGP_AJ_P0072204 Cwh43 protein_coding protein_coding MGP_AJ_T0072205.1 MGP_AJ_G0029593.1 mouse_genomes_project 5 70659310 70707936 + MGP_AJ_P0072205 Cwh43 protein_coding protein_coding MGP_AJ_T0072206.1 MGP_AJ_G0029593.1 mouse_genomes_project 5 70659445 70707783 + MGP_AJ_P0072206 Cwh43 protein_coding unknown_likely_coding MGP_AJ_T0072207.1 MGP_AJ_G0029593.1 mouse_genomes_project 5 70683572 70689083 + Cwh43 protein_coding retained_intron MGP_AJ_T0001743.1 MGP_AJ_G0001658.1 mouse_genomes_project 5 103680289 103682551 + TEC TEC MGP_AJ_T0073277.1 MGP_AJ_G0029838.1 mouse_genomes_project 5 107293057 107332039 + MGP_AJ_P0073277 Vmn2r16 protein_coding protein_coding MGP_AJ_T0008225.1 MGP_AJ_G0006703.1 mouse_genomes_project 5 96221232 96234576 - 1700010H22Rik lincRNA lincRNA MGP_AJ_T0008226.1 MGP_AJ_G0006703.1 mouse_genomes_project 5 96230393 96234654 - 1700010H22Rik lincRNA lincRNA MGP_AJ_T0008227.1 MGP_AJ_G0006703.1 mouse_genomes_project 5 96231838 96234412 - 1700010H22Rik lincRNA lincRNA MGP_AJ_T0015119.1 MGP_AJ_G0013214.1 mouse_genomes_project 5 107778211 107778571 - processed_pseudogene processed_pseudogene MGP_AJ_T0014935.1 MGP_AJ_G0013030.1 mouse_genomes_project 5 30219504 30221448 + processed_pseudogene processed_pseudogene MGP_AJ_T0071365.1 MGP_AJ_G0029449.1 mouse_genomes_project 5 32839383 32866612 - MGP_AJ_P0071365 Htra3 protein_coding protein_coding MGP_AJ_T0071366.1 MGP_AJ_G0029449.1 mouse_genomes_project 5 32840368 32866360 - MGP_AJ_P0071366 Htra3 protein_coding nonsense_mediated_decay MGP_AJ_T0071367.1 MGP_AJ_G0029449.1 mouse_genomes_project 5 32848906 32866738 - MGP_AJ_P0071367 Htra3 protein_coding protein_coding MGP_AJ_T0071368.1 MGP_AJ_G0029449.1 mouse_genomes_project 5 32855546 32858906 - MGP_AJ_P0071368 Htra3 protein_coding protein_coding MGP_AJ_T0071369.1 MGP_AJ_G0029449.1 mouse_genomes_project 5 32865648 32866728 - Htra3 protein_coding retained_intron MGP_AJ_T0004634.1 MGP_AJ_G0004012.1 mouse_genomes_project 5 5612231 5634757 - Gm5106 antisense antisense MGP_AJ_T0004668.1 MGP_AJ_G0004040.1 mouse_genomes_project 5 31811715 31813475 + Gm15522 antisense antisense MGP_AJ_T0075005.1 MGP_AJ_G0030149.1 mouse_genomes_project 5 133905057 133911903 + MGP_AJ_P0075005 Nsun5 protein_coding protein_coding MGP_AJ_T0075006.1 MGP_AJ_G0030149.1 mouse_genomes_project 5 133905074 133906508 + Nsun5 protein_coding processed_transcript MGP_AJ_T0075007.1 MGP_AJ_G0030149.1 mouse_genomes_project 5 133905079 133909309 + MGP_AJ_P0075007 Nsun5 protein_coding nonsense_mediated_decay MGP_AJ_T0075008.1 MGP_AJ_G0030149.1 mouse_genomes_project 5 133905095 133909170 + MGP_AJ_P0075008 Nsun5 protein_coding nonsense_mediated_decay MGP_AJ_T0075009.1 MGP_AJ_G0030149.1 mouse_genomes_project 5 133905681 133907646 + Nsun5 protein_coding retained_intron MGP_AJ_T0075010.1 MGP_AJ_G0030149.1 mouse_genomes_project 5 133906031 133909189 + Nsun5 protein_coding retained_intron MGP_AJ_T0075011.1 MGP_AJ_G0030149.1 mouse_genomes_project 5 133906163 133906913 + Nsun5 protein_coding retained_intron MGP_AJ_T0075012.1 MGP_AJ_G0030149.1 mouse_genomes_project 5 133908746 133911910 + Nsun5 protein_coding retained_intron MGP_AJ_T0075013.1 MGP_AJ_G0030149.1 mouse_genomes_project 5 133909283 133911248 + Nsun5 protein_coding retained_intron MGP_AJ_T0074648.1 MGP_AJ_G0030087.1 mouse_genomes_project 5 127156686 127202730 + MGP_AJ_P0074648 Piwil1 protein_coding protein_coding MGP_AJ_T0074649.1 MGP_AJ_G0030087.1 mouse_genomes_project 5 127191238 127210879 + MGP_AJ_P0074649 Piwil1 protein_coding protein_coding MGP_AJ_T0074650.1 MGP_AJ_G0030087.1 mouse_genomes_project 5 127192554 127209988 + MGP_AJ_P0074650 Piwil1 protein_coding protein_coding MGP_AJ_T0076063.1 MGP_AJ_G0030370.1 mouse_genomes_project 5 148063250 148119818 - MGP_AJ_P0076063 Katnal1 protein_coding unknown_likely_coding MGP_AJ_T0076064.1 MGP_AJ_G0030370.1 mouse_genomes_project 5 148063257 148119830 - MGP_AJ_P0076064 Katnal1 protein_coding protein_coding MGP_AJ_T0076065.1 MGP_AJ_G0030370.1 mouse_genomes_project 5 148067352 148070647 - Katnal1 protein_coding retained_intron MGP_AJ_T0076066.1 MGP_AJ_G0030370.1 mouse_genomes_project 5 148077055 148120183 - Katnal1 protein_coding processed_transcript MGP_AJ_T0076067.1 MGP_AJ_G0030370.1 mouse_genomes_project 5 148084949 148120502 - MGP_AJ_P0076067 Katnal1 protein_coding protein_coding MGP_AJ_T0076069.1 MGP_AJ_G0030370.1 mouse_genomes_project 5 148095763 148119811 - MGP_AJ_P0076069 Katnal1 protein_coding protein_coding MGP_AJ_T0076070.1 MGP_AJ_G0030370.1 mouse_genomes_project 5 148115803 148119848 - Katnal1 protein_coding processed_transcript MGP_AJ_T0010727.1 MGP_AJ_G0008849.1 mouse_genomes_project 5 136779691 136779775 - Mir25 miRNA miRNA MGP_AJ_T0004667.1 MGP_AJ_G0004039.1 mouse_genomes_project 5 31380148 31384969 + Gm42848 antisense antisense MGP_AJ_T0071525.1 MGP_AJ_G0029477.1 mouse_genomes_project 5 35503447 35506601 + MGP_AJ_P0071525 Drd5 protein_coding protein_coding MGP_AJ_T0008197.1 MGP_AJ_G0006679.1 mouse_genomes_project 5 79385188 79387491 - 1700031L13Rik lincRNA lincRNA MGP_AJ_T0008198.1 MGP_AJ_G0006679.1 mouse_genomes_project 5 79385207 79387494 - 1700031L13Rik lincRNA lincRNA MGP_AJ_T0008199.1 MGP_AJ_G0006679.1 mouse_genomes_project 5 79385217 79386126 - 1700031L13Rik lincRNA lincRNA MGP_AJ_T0008200.1 MGP_AJ_G0006679.1 mouse_genomes_project 5 79385466 79386118 - 1700031L13Rik lincRNA lincRNA MGP_AJ_T0018167.1 MGP_AJ_G0015583.1 mouse_genomes_project 5 88014187 88050958 - Gm43448 processed_transcript processed_transcript MGP_AJ_T0018168.1 MGP_AJ_G0015583.1 mouse_genomes_project 5 88032212 88050978 - Gm43448 processed_transcript processed_transcript MGP_AJ_T0001848.1 MGP_AJ_G0001762.1 mouse_genomes_project 5 130074326 130076077 - TEC TEC MGP_AJ_T0004893.1 MGP_AJ_G0004204.1 mouse_genomes_project 5 149293783 149310152 - Gm42557 antisense antisense MGP_AJ_T0001767.1 MGP_AJ_G0001682.1 mouse_genomes_project 5 111450173 111451492 + TEC TEC MGP_AJ_T0008311.1 MGP_AJ_G0006755.1 mouse_genomes_project 5 110689745 110690479 + Gm27004 lincRNA lincRNA MGP_AJ_T0076117.1 MGP_AJ_G0030379.1 mouse_genomes_project 5 148896971 148984775 + MGP_AJ_P0076117 B3glct protein_coding protein_coding MGP_AJ_T0076118.1 MGP_AJ_G0030379.1 mouse_genomes_project 5 148959857 148972604 + B3glct protein_coding processed_transcript MGP_AJ_T0076119.1 MGP_AJ_G0030379.1 mouse_genomes_project 5 148976134 148982785 + B3glct protein_coding retained_intron MGP_AJ_T0102640.1 MGP_AJ_G0040382.1 mouse_genomes_project 5 84567807 84586208 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0074695.1 MGP_AJ_G0030096.1 mouse_genomes_project 5 128204170 128211243 + MGP_AJ_P0074695 Mrps17 protein_coding protein_coding MGP_AJ_T0074696.1 MGP_AJ_G0030096.1 mouse_genomes_project 5 128204176 128207158 + MGP_AJ_P0074696 Mrps17 protein_coding protein_coding MGP_AJ_T0074697.1 MGP_AJ_G0030096.1 mouse_genomes_project 5 128204177 128207075 + MGP_AJ_P0074697 Mrps17 protein_coding protein_coding MGP_AJ_T0074698.1 MGP_AJ_G0030096.1 mouse_genomes_project 5 128204182 128206697 + MGP_AJ_P0074698 Mrps17 protein_coding protein_coding MGP_AJ_T0074699.1 MGP_AJ_G0030096.1 mouse_genomes_project 5 128204184 128207553 + MGP_AJ_P0074699 Mrps17 protein_coding protein_coding MGP_AJ_T0074700.1 MGP_AJ_G0030096.1 mouse_genomes_project 5 128204189 128207369 + MGP_AJ_P0074700 Mrps17 protein_coding protein_coding MGP_AJ_T0074701.1 MGP_AJ_G0030096.1 mouse_genomes_project 5 128204191 128206019 + Mrps17 protein_coding retained_intron MGP_AJ_T0074702.1 MGP_AJ_G0030096.1 mouse_genomes_project 5 128204207 128206732 + MGP_AJ_P0074702 Mrps17 protein_coding protein_coding MGP_AJ_T0074703.1 MGP_AJ_G0030096.1 mouse_genomes_project 5 128204231 128206968 + MGP_AJ_P0074703 Mrps17 protein_coding protein_coding MGP_AJ_T0074704.1 MGP_AJ_G0030096.1 mouse_genomes_project 5 128204250 128207125 + MGP_AJ_P0074704 Mrps17 protein_coding protein_coding MGP_AJ_T0074705.1 MGP_AJ_G0030096.1 mouse_genomes_project 5 128204370 128205507 + MGP_AJ_P0074705 Mrps17 protein_coding protein_coding MGP_AJ_T0015214.1 MGP_AJ_G0013309.1 mouse_genomes_project 5 147351624 147353541 - processed_pseudogene processed_pseudogene MGP_AJ_T0101277.1 MGP_AJ_G0039243.1 mouse_genomes_project 5 33838384 33838508 + snoRNA snoRNA MGP_AJ_T0100020.1 MGP_AJ_G0037986.1 mouse_genomes_project 5 72632808 72632913 - Gm22084 snRNA snRNA MGP_AJ_T0014900.1 MGP_AJ_G0012995.1 mouse_genomes_project 5 19864281 19864862 - processed_pseudogene processed_pseudogene MGP_AJ_T0102629.1 MGP_AJ_G0040371.1 mouse_genomes_project 5 47373750 47538577 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0101289.1 MGP_AJ_G0039255.1 mouse_genomes_project 5 61343175 61343309 + Gm22559 snoRNA snoRNA MGP_AJ_T0001495.1 MGP_AJ_G0001414.1 mouse_genomes_project 5 28783282 28783514 + TEC TEC MGP_AJ_T0001688.1 MGP_AJ_G0001603.1 mouse_genomes_project 5 70523378 70524256 + TEC TEC MGP_AJ_T0014871.1 MGP_AJ_G0012966.1 mouse_genomes_project 5 13921781 13922034 + processed_pseudogene processed_pseudogene MGP_AJ_T0072941.1 MGP_AJ_G0029759.1 mouse_genomes_project 5 98502518 98518284 - MGP_AJ_P0072941 Fam175a protein_coding nonsense_mediated_decay MGP_AJ_T0072942.1 MGP_AJ_G0029759.1 mouse_genomes_project 5 98502518 98518309 - MGP_AJ_P0072942 Fam175a protein_coding protein_coding MGP_AJ_T0072943.1 MGP_AJ_G0029759.1 mouse_genomes_project 5 98502518 98518287 - MGP_AJ_P0072943 Fam175a protein_coding nonsense_mediated_decay MGP_AJ_T0072944.1 MGP_AJ_G0029759.1 mouse_genomes_project 5 98502518 98518284 - MGP_AJ_P0072944 Fam175a protein_coding nonsense_mediated_decay MGP_AJ_T0072945.1 MGP_AJ_G0029759.1 mouse_genomes_project 5 98502529 98518284 - MGP_AJ_P0072945 Fam175a protein_coding protein_coding MGP_AJ_T0072946.1 MGP_AJ_G0029759.1 mouse_genomes_project 5 98503651 98504641 - Fam175a protein_coding retained_intron MGP_AJ_T0072947.1 MGP_AJ_G0029759.1 mouse_genomes_project 5 98507109 98518285 - MGP_AJ_P0072947 Fam175a protein_coding nonsense_mediated_decay MGP_AJ_T0072948.1 MGP_AJ_G0029759.1 mouse_genomes_project 5 98515098 98518291 - Fam175a protein_coding retained_intron MGP_AJ_T0072949.1 MGP_AJ_G0029759.1 mouse_genomes_project 5 98515701 98518284 - Fam175a protein_coding retained_intron MGP_AJ_T0071605.1 MGP_AJ_G0029495.1 mouse_genomes_project 5 41167607 41276095 - MGP_AJ_P0071605 Prom1 protein_coding protein_coding MGP_AJ_T0071606.1 MGP_AJ_G0029495.1 mouse_genomes_project 5 41167609 41276173 - MGP_AJ_P0071606 Prom1 protein_coding protein_coding MGP_AJ_T0071607.1 MGP_AJ_G0029495.1 mouse_genomes_project 5 41167609 41273366 - MGP_AJ_P0071607 Prom1 protein_coding protein_coding MGP_AJ_T0071608.1 MGP_AJ_G0029495.1 mouse_genomes_project 5 41167609 41275822 - MGP_AJ_P0071608 Prom1 protein_coding protein_coding MGP_AJ_T0071609.1 MGP_AJ_G0029495.1 mouse_genomes_project 5 41167609 41179105 - MGP_AJ_P0071609 Prom1 protein_coding protein_coding MGP_AJ_T0071610.1 MGP_AJ_G0029495.1 mouse_genomes_project 5 41167612 41268909 - MGP_AJ_P0071610 Prom1 protein_coding protein_coding MGP_AJ_T0071611.1 MGP_AJ_G0029495.1 mouse_genomes_project 5 41167612 41268909 - MGP_AJ_P0071611 Prom1 protein_coding protein_coding MGP_AJ_T0071612.1 MGP_AJ_G0029495.1 mouse_genomes_project 5 41175259 41273333 - MGP_AJ_P0071612 Prom1 protein_coding protein_coding MGP_AJ_T0071613.1 MGP_AJ_G0029495.1 mouse_genomes_project 5 41175422 41268854 - MGP_AJ_P0071613 Prom1 protein_coding protein_coding MGP_AJ_T0071614.1 MGP_AJ_G0029495.1 mouse_genomes_project 5 41175422 41268909 - MGP_AJ_P0071614 Prom1 protein_coding protein_coding MGP_AJ_T0071615.1 MGP_AJ_G0029495.1 mouse_genomes_project 5 41175422 41268854 - MGP_AJ_P0071615 Prom1 protein_coding protein_coding MGP_AJ_T0071616.1 MGP_AJ_G0029495.1 mouse_genomes_project 5 41187008 41207295 - Prom1 protein_coding retained_intron MGP_AJ_T0071617.1 MGP_AJ_G0029495.1 mouse_genomes_project 5 41201069 41219651 - MGP_AJ_P0071617 Prom1 protein_coding nonsense_mediated_decay MGP_AJ_T0071618.1 MGP_AJ_G0029495.1 mouse_genomes_project 5 41203954 41218725 - Prom1 protein_coding retained_intron MGP_AJ_T0071619.1 MGP_AJ_G0029495.1 mouse_genomes_project 5 41218101 41276099 - Prom1 protein_coding retained_intron MGP_AJ_T0071620.1 MGP_AJ_G0029495.1 mouse_genomes_project 5 41221670 41241824 - Prom1 protein_coding processed_transcript MGP_AJ_T0071621.1 MGP_AJ_G0029495.1 mouse_genomes_project 5 41230140 41273327 - MGP_AJ_P0071621 Prom1 protein_coding protein_coding MGP_AJ_T0071622.1 MGP_AJ_G0029495.1 mouse_genomes_project 5 41273795 41276099 - Prom1 protein_coding processed_transcript MGP_AJ_T0072621.1 MGP_AJ_G0029686.1 mouse_genomes_project 5 87822571 87823855 + MGP_AJ_P0072621 Gm9958 protein_coding protein_coding MGP_AJ_T0070795.1 MGP_AJ_G0029364.1 mouse_genomes_project 5 27910668 27913182 + MGP_AJ_P0070795 Agbl5 protein_coding protein_coding MGP_AJ_T0070796.1 MGP_AJ_G0029364.1 mouse_genomes_project 5 27910826 27918662 + MGP_AJ_P0070796 Agbl5 protein_coding protein_coding MGP_AJ_T0070797.1 MGP_AJ_G0029364.1 mouse_genomes_project 5 27910909 27928945 + MGP_AJ_P0070797 Agbl5 protein_coding protein_coding MGP_AJ_T0070798.1 MGP_AJ_G0029364.1 mouse_genomes_project 5 27910915 27915808 + Agbl5 protein_coding retained_intron MGP_AJ_T0070799.1 MGP_AJ_G0029364.1 mouse_genomes_project 5 27910930 27928647 + Agbl5 protein_coding retained_intron MGP_AJ_T0070800.1 MGP_AJ_G0029364.1 mouse_genomes_project 5 27910943 27918059 + Agbl5 protein_coding retained_intron MGP_AJ_T0070801.1 MGP_AJ_G0029364.1 mouse_genomes_project 5 27910943 27928646 + MGP_AJ_P0070801 Agbl5 protein_coding protein_coding MGP_AJ_T0070802.1 MGP_AJ_G0029364.1 mouse_genomes_project 5 27910948 27925344 + MGP_AJ_P0070802 Agbl5 protein_coding protein_coding MGP_AJ_T0070803.1 MGP_AJ_G0029364.1 mouse_genomes_project 5 27910975 27928646 + MGP_AJ_P0070803 Agbl5 protein_coding nonsense_mediated_decay MGP_AJ_T0070804.1 MGP_AJ_G0029364.1 mouse_genomes_project 5 27910980 27925344 + MGP_AJ_P0070804 Agbl5 protein_coding protein_coding MGP_AJ_T0070805.1 MGP_AJ_G0029364.1 mouse_genomes_project 5 27910980 27928646 + MGP_AJ_P0070805 Agbl5 protein_coding protein_coding MGP_AJ_T0070806.1 MGP_AJ_G0029364.1 mouse_genomes_project 5 27911300 27913844 + MGP_AJ_P0070806 Agbl5 protein_coding protein_coding MGP_AJ_T0070807.1 MGP_AJ_G0029364.1 mouse_genomes_project 5 27912256 27914422 + Agbl5 protein_coding processed_transcript MGP_AJ_T0070808.1 MGP_AJ_G0029364.1 mouse_genomes_project 5 27916178 27918069 + Agbl5 protein_coding retained_intron MGP_AJ_T0070810.1 MGP_AJ_G0029364.1 mouse_genomes_project 5 27917113 27918090 + Agbl5 protein_coding retained_intron MGP_AJ_T0070811.1 MGP_AJ_G0029364.1 mouse_genomes_project 5 27917907 27927890 + MGP_AJ_P0070811 Agbl5 protein_coding protein_coding MGP_AJ_T0011590.1 MGP_AJ_G0009712.1 mouse_genomes_project 5 21793251 21793496 - Gm25363 misc_RNA misc_RNA MGP_AJ_T0015088.1 MGP_AJ_G0013183.1 mouse_genomes_project 5 100639820 100640075 - processed_pseudogene processed_pseudogene MGP_AJ_T0071430.1 MGP_AJ_G0029460.1 mouse_genomes_project 5 33921027 33922300 - MGP_AJ_P0071430 Bloc1s4 protein_coding protein_coding MGP_AJ_T0101301.1 MGP_AJ_G0039267.1 mouse_genomes_project 5 90535787 90535923 + Gm22915 snoRNA snoRNA MGP_AJ_T0100062.1 MGP_AJ_G0038028.1 mouse_genomes_project 5 137110840 137110947 + Gm25525 snRNA snRNA MGP_AJ_T0004863.1 MGP_AJ_G0004185.1 mouse_genomes_project 5 136993132 136995751 + 6330418K02Rik antisense antisense MGP_AJ_T0004864.1 MGP_AJ_G0004185.1 mouse_genomes_project 5 136993143 136995422 + 6330418K02Rik antisense antisense MGP_AJ_T0004865.1 MGP_AJ_G0004185.1 mouse_genomes_project 5 136993158 136995751 + 6330418K02Rik antisense antisense MGP_AJ_T0004866.1 MGP_AJ_G0004185.1 mouse_genomes_project 5 136993197 136995319 + 6330418K02Rik antisense antisense MGP_AJ_T0004867.1 MGP_AJ_G0004185.1 mouse_genomes_project 5 136994633 136995173 + 6330418K02Rik antisense antisense MGP_AJ_T0001860.1 MGP_AJ_G0001774.1 mouse_genomes_project 5 130480094 130482329 - TEC TEC MGP_AJ_T0072491.1 MGP_AJ_G0029650.1 mouse_genomes_project 5 84778154 84818302 - MGP_AJ_P0072491 Ugt2a1 protein_coding protein_coding MGP_AJ_T0008289.1 MGP_AJ_G0006745.1 mouse_genomes_project 5 109671649 109678164 + C130026L21Rik lincRNA lincRNA MGP_AJ_T0008290.1 MGP_AJ_G0006745.1 mouse_genomes_project 5 109671788 109677372 + C130026L21Rik lincRNA lincRNA MGP_AJ_T0008291.1 MGP_AJ_G0006745.1 mouse_genomes_project 5 109671795 109673101 + C130026L21Rik lincRNA lincRNA MGP_AJ_T0008292.1 MGP_AJ_G0006745.1 mouse_genomes_project 5 109672658 109695227 + C130026L21Rik lincRNA lincRNA MGP_AJ_T0010688.1 MGP_AJ_G0008810.1 mouse_genomes_project 5 80070544 80070666 - Mir1187 miRNA miRNA MGP_AJ_T0075014.1 MGP_AJ_G0030150.1 mouse_genomes_project 5 133911245 133937908 - MGP_AJ_P0075014 Pom121 protein_coding protein_coding MGP_AJ_T0100004.1 MGP_AJ_G0037970.1 mouse_genomes_project 5 35876366 35876473 - Gm22779 snRNA snRNA MGP_AJ_T0015223.1 MGP_AJ_G0013318.1 mouse_genomes_project 5 150529608 150530132 + processed_pseudogene processed_pseudogene MGP_AJ_T0008304.1 MGP_AJ_G0006753.1 mouse_genomes_project 5 110314336 110331310 - Miat lincRNA lincRNA MGP_AJ_T0008305.1 MGP_AJ_G0006753.1 mouse_genomes_project 5 110314338 110330863 - Miat lincRNA lincRNA MGP_AJ_T0008307.1 MGP_AJ_G0006753.1 mouse_genomes_project 5 110322508 110330559 - Miat lincRNA lincRNA MGP_AJ_T0008308.1 MGP_AJ_G0006753.1 mouse_genomes_project 5 110322799 110330844 - Miat lincRNA lincRNA MGP_AJ_T0008309.1 MGP_AJ_G0006753.1 mouse_genomes_project 5 110322997 110330590 - Miat lincRNA lincRNA MGP_AJ_T0008310.1 MGP_AJ_G0006753.1 mouse_genomes_project 5 110330020 110330556 - Miat lincRNA lincRNA MGP_AJ_T0072844.1 MGP_AJ_G0029742.1 mouse_genomes_project 5 96529293 96549778 + MGP_AJ_P0072844 Bmp3 protein_coding protein_coding MGP_AJ_T0072845.1 MGP_AJ_G0029742.1 mouse_genomes_project 5 96529317 96560464 + MGP_AJ_P0072845 Bmp3 protein_coding protein_coding MGP_AJ_T0072846.1 MGP_AJ_G0029742.1 mouse_genomes_project 5 96529329 96560464 + MGP_AJ_P0072846 Bmp3 protein_coding protein_coding MGP_AJ_T0015058.1 MGP_AJ_G0013153.1 mouse_genomes_project 5 85516087 85516442 + processed_pseudogene processed_pseudogene MGP_AJ_T0008263.1 MGP_AJ_G0006728.1 mouse_genomes_project 5 104171530 104174082 - 4930432H08Rik lincRNA lincRNA MGP_AJ_T0076088.1 MGP_AJ_G0030374.1 mouse_genomes_project 5 148475848 148499136 + MGP_AJ_P0076088 Alox5ap protein_coding protein_coding MGP_AJ_T0076089.1 MGP_AJ_G0030374.1 mouse_genomes_project 5 148490097 148498836 + MGP_AJ_P0076089 Alox5ap protein_coding protein_coding MGP_AJ_T0076090.1 MGP_AJ_G0030374.1 mouse_genomes_project 5 148498500 148499130 + Alox5ap protein_coding processed_transcript MGP_AJ_T0004815.1 MGP_AJ_G0004149.1 mouse_genomes_project 5 120249073 120249707 + 1700008B11Rik antisense antisense MGP_AJ_T0073658.1 MGP_AJ_G0029910.1 mouse_genomes_project 5 112917451 112948615 + MGP_AJ_P0073658 Ankrd13a protein_coding protein_coding MGP_AJ_T0073659.1 MGP_AJ_G0029910.1 mouse_genomes_project 5 112917719 112948990 + Ankrd13a protein_coding processed_transcript MGP_AJ_T0073660.1 MGP_AJ_G0029910.1 mouse_genomes_project 5 112928833 112946404 + MGP_AJ_P0073660 Ankrd13a protein_coding protein_coding MGP_AJ_T0073661.1 MGP_AJ_G0029910.1 mouse_genomes_project 5 112938531 112948990 + Ankrd13a protein_coding processed_transcript MGP_AJ_T0073662.1 MGP_AJ_G0029910.1 mouse_genomes_project 5 112942249 112948990 + Ankrd13a protein_coding processed_transcript MGP_AJ_T0073663.1 MGP_AJ_G0029910.1 mouse_genomes_project 5 112942363 112944356 + Ankrd13a protein_coding retained_intron MGP_AJ_T0071132.1 MGP_AJ_G0029416.1 mouse_genomes_project 5 30786979 30805288 - MGP_AJ_P0071132 Slbp protein_coding protein_coding MGP_AJ_T0071133.1 MGP_AJ_G0029416.1 mouse_genomes_project 5 30792083 30805517 - MGP_AJ_P0071133 Slbp protein_coding protein_coding MGP_AJ_T0071134.1 MGP_AJ_G0029416.1 mouse_genomes_project 5 30792083 30805249 - MGP_AJ_P0071134 Slbp protein_coding protein_coding MGP_AJ_T0071135.1 MGP_AJ_G0029416.1 mouse_genomes_project 5 30794540 30805281 - Slbp protein_coding retained_intron MGP_AJ_T0071136.1 MGP_AJ_G0029416.1 mouse_genomes_project 5 30795805 30805243 - MGP_AJ_P0071136 Slbp protein_coding protein_coding MGP_AJ_T0071137.1 MGP_AJ_G0029416.1 mouse_genomes_project 5 30798032 30805239 - MGP_AJ_P0071137 Slbp protein_coding protein_coding MGP_AJ_T0071138.1 MGP_AJ_G0029416.1 mouse_genomes_project 5 30799719 30805296 - Slbp protein_coding retained_intron MGP_AJ_T0071139.1 MGP_AJ_G0029416.1 mouse_genomes_project 5 30804567 30805244 - Slbp protein_coding retained_intron MGP_AJ_T0014965.1 MGP_AJ_G0013060.1 mouse_genomes_project 5 44877818 44878266 + processed_pseudogene processed_pseudogene MGP_AJ_T0072070.1 MGP_AJ_G0029566.1 mouse_genomes_project 5 65183355 65202536 - MGP_AJ_P0072070 Gm21905 protein_coding protein_coding MGP_AJ_T0001452.1 MGP_AJ_G0001373.1 mouse_genomes_project 5 10371287 10374027 + TEC TEC MGP_AJ_T0011823.1 MGP_AJ_G0009928.1 mouse_genomes_project 5 69416040 69444199 + MGP_AJ_P0011823 Atp10d polymorphic_pseudogene protein_coding MGP_AJ_T0011824.1 MGP_AJ_G0009928.1 mouse_genomes_project 5 69416040 69513972 + MGP_AJ_P0011824 Atp10d polymorphic_pseudogene polymorphic_pseudogene MGP_AJ_T0011825.1 MGP_AJ_G0009928.1 mouse_genomes_project 5 69416064 69443335 + Atp10d polymorphic_pseudogene retained_intron MGP_AJ_T0011826.1 MGP_AJ_G0009928.1 mouse_genomes_project 5 69479949 69513972 + Atp10d polymorphic_pseudogene processed_transcript MGP_AJ_T0011827.1 MGP_AJ_G0009928.1 mouse_genomes_project 5 69495352 69513958 + MGP_AJ_P0011827 Atp10d polymorphic_pseudogene protein_coding MGP_AJ_T0011828.1 MGP_AJ_G0009928.1 mouse_genomes_project 5 69495352 69513959 + Atp10d polymorphic_pseudogene processed_transcript MGP_AJ_T0073946.1 MGP_AJ_G0029967.1 mouse_genomes_project 5 118720744 118728122 + MGP_AJ_P0073946 Sds protein_coding protein_coding MGP_AJ_T0073947.1 MGP_AJ_G0029967.1 mouse_genomes_project 5 118720749 118728122 + MGP_AJ_P0073947 Sds protein_coding protein_coding MGP_AJ_T0073948.1 MGP_AJ_G0029967.1 mouse_genomes_project 5 118723076 118724878 + MGP_AJ_P0073948 Sds protein_coding protein_coding MGP_AJ_T0073949.1 MGP_AJ_G0029967.1 mouse_genomes_project 5 118724553 118725079 + Sds protein_coding retained_intron MGP_AJ_T0070980.1 MGP_AJ_G0029390.1 mouse_genomes_project 5 28329549 28361789 + MGP_AJ_P0070980 Gckr protein_coding protein_coding MGP_AJ_T0070981.1 MGP_AJ_G0029390.1 mouse_genomes_project 5 28329660 28361770 + Gckr protein_coding retained_intron MGP_AJ_T0070982.1 MGP_AJ_G0029390.1 mouse_genomes_project 5 28329687 28361777 + MGP_AJ_P0070982 Gckr protein_coding protein_coding MGP_AJ_T0070983.1 MGP_AJ_G0029390.1 mouse_genomes_project 5 28329718 28332689 + MGP_AJ_P0070983 Gckr protein_coding protein_coding MGP_AJ_T0070984.1 MGP_AJ_G0029390.1 mouse_genomes_project 5 28330809 28338701 + Gckr protein_coding retained_intron MGP_AJ_T0070985.1 MGP_AJ_G0029390.1 mouse_genomes_project 5 28331614 28337607 + Gckr protein_coding retained_intron MGP_AJ_T0070986.1 MGP_AJ_G0029390.1 mouse_genomes_project 5 28360705 28361772 + Gckr protein_coding retained_intron MGP_AJ_T0074597.1 MGP_AJ_G0030074.1 mouse_genomes_project 5 123708056 123772556 - MGP_AJ_P0074597 Scarb1 protein_coding protein_coding MGP_AJ_T0074598.1 MGP_AJ_G0030074.1 mouse_genomes_project 5 123708058 123772533 - MGP_AJ_P0074598 Scarb1 protein_coding protein_coding MGP_AJ_T0074599.1 MGP_AJ_G0030074.1 mouse_genomes_project 5 123708535 123725663 - MGP_AJ_P0074599 Scarb1 protein_coding protein_coding MGP_AJ_T0074600.1 MGP_AJ_G0030074.1 mouse_genomes_project 5 123708756 123715123 - Scarb1 protein_coding processed_transcript MGP_AJ_T0074601.1 MGP_AJ_G0030074.1 mouse_genomes_project 5 123713913 123717636 - Scarb1 protein_coding retained_intron MGP_AJ_T0074602.1 MGP_AJ_G0030074.1 mouse_genomes_project 5 123714318 123772481 - Scarb1 protein_coding retained_intron MGP_AJ_T0074603.1 MGP_AJ_G0030074.1 mouse_genomes_project 5 123728723 123736056 - Scarb1 protein_coding retained_intron MGP_AJ_T0074604.1 MGP_AJ_G0030074.1 mouse_genomes_project 5 123731855 123748289 - Scarb1 protein_coding processed_transcript MGP_AJ_T0074605.1 MGP_AJ_G0030074.1 mouse_genomes_project 5 123734702 123771461 - MGP_AJ_P0074605 Scarb1 protein_coding protein_coding MGP_AJ_T0074606.1 MGP_AJ_G0030074.1 mouse_genomes_project 5 123735762 123757929 - Scarb1 protein_coding processed_transcript MGP_AJ_T0074607.1 MGP_AJ_G0030074.1 mouse_genomes_project 5 123756922 123759393 - Scarb1 protein_coding retained_intron MGP_AJ_T0071570.1 MGP_AJ_G0029487.1 mouse_genomes_project 5 40411024 40466013 + MGP_AJ_P0071570 Cpeb2 protein_coding protein_coding MGP_AJ_T0071571.1 MGP_AJ_G0029487.1 mouse_genomes_project 5 40411317 40466018 + MGP_AJ_P0071571 Cpeb2 protein_coding protein_coding MGP_AJ_T0071572.1 MGP_AJ_G0029487.1 mouse_genomes_project 5 40411781 40415774 + Cpeb2 protein_coding retained_intron MGP_AJ_T0071573.1 MGP_AJ_G0029487.1 mouse_genomes_project 5 40412892 40457499 + MGP_AJ_P0071573 Cpeb2 protein_coding protein_coding MGP_AJ_T0071574.1 MGP_AJ_G0029487.1 mouse_genomes_project 5 40412904 40413740 + Cpeb2 protein_coding processed_transcript MGP_AJ_T0071575.1 MGP_AJ_G0029487.1 mouse_genomes_project 5 40415169 40424300 + Cpeb2 protein_coding processed_transcript MGP_AJ_T0075871.1 MGP_AJ_G0030324.1 mouse_genomes_project 5 144039832 144065637 + MGP_AJ_P0075871 Arpc1a protein_coding protein_coding MGP_AJ_T0075872.1 MGP_AJ_G0030324.1 mouse_genomes_project 5 144039886 144052093 + Arpc1a protein_coding processed_transcript MGP_AJ_T0075873.1 MGP_AJ_G0030324.1 mouse_genomes_project 5 144039908 144065632 + MGP_AJ_P0075873 Arpc1a protein_coding nonsense_mediated_decay MGP_AJ_T0075874.1 MGP_AJ_G0030324.1 mouse_genomes_project 5 144040101 144053138 + MGP_AJ_P0075874 Arpc1a protein_coding protein_coding MGP_AJ_T0075875.1 MGP_AJ_G0030324.1 mouse_genomes_project 5 144052166 144055786 + Arpc1a protein_coding retained_intron MGP_AJ_T0075876.1 MGP_AJ_G0030324.1 mouse_genomes_project 5 144061144 144065468 + Arpc1a protein_coding retained_intron MGP_AJ_T0072723.1 MGP_AJ_G0029716.1 mouse_genomes_project 5 89813796 89816026 - Cxcl10 protein_coding retained_intron MGP_AJ_T0072724.1 MGP_AJ_G0029716.1 mouse_genomes_project 5 89813796 89816041 - MGP_AJ_P0072724 Cxcl10 protein_coding protein_coding MGP_AJ_T0072725.1 MGP_AJ_G0029716.1 mouse_genomes_project 5 89813963 89816048 - MGP_AJ_P0072725 Cxcl10 protein_coding protein_coding MGP_AJ_T0072726.1 MGP_AJ_G0029716.1 mouse_genomes_project 5 89815159 89816041 - Cxcl10 protein_coding retained_intron MGP_AJ_T0074367.1 MGP_AJ_G0030040.1 mouse_genomes_project 5 121992511 122028167 - MGP_AJ_P0074367 Vps33a protein_coding protein_coding MGP_AJ_T0074368.1 MGP_AJ_G0030040.1 mouse_genomes_project 5 122006390 122012095 - Vps33a protein_coding retained_intron MGP_AJ_T0074369.1 MGP_AJ_G0030040.1 mouse_genomes_project 5 122016627 122022210 - Vps33a protein_coding retained_intron MGP_AJ_T0074370.1 MGP_AJ_G0030040.1 mouse_genomes_project 5 122018329 122028108 - MGP_AJ_P0074370 Vps33a protein_coding nonsense_mediated_decay MGP_AJ_T0015020.1 MGP_AJ_G0013115.1 mouse_genomes_project 5 69626497 69627011 + processed_pseudogene processed_pseudogene MGP_AJ_T0004881.1 MGP_AJ_G0004195.1 mouse_genomes_project 5 142821103 142893866 - Gm17135 antisense antisense MGP_AJ_T0073706.1 MGP_AJ_G0029923.1 mouse_genomes_project 5 113282874 113296423 - MGP_AJ_P0073706 Unc119b protein_coding protein_coding MGP_AJ_T0073707.1 MGP_AJ_G0029923.1 mouse_genomes_project 5 113286357 113288961 - Unc119b protein_coding retained_intron MGP_AJ_T0073708.1 MGP_AJ_G0029923.1 mouse_genomes_project 5 113291070 113296373 - Unc119b protein_coding retained_intron MGP_AJ_T0014929.1 MGP_AJ_G0013024.1 mouse_genomes_project 5 29258418 29259001 + processed_pseudogene processed_pseudogene MGP_AJ_T0004779.1 MGP_AJ_G0004124.1 mouse_genomes_project 5 111964755 111965271 + Gm17122 antisense antisense MGP_AJ_T0015198.1 MGP_AJ_G0013293.1 mouse_genomes_project 5 144364112 144364305 + processed_pseudogene processed_pseudogene MGP_AJ_T0001857.1 MGP_AJ_G0001771.1 mouse_genomes_project 5 130440784 130441758 - TEC TEC MGP_AJ_T0008154.1 MGP_AJ_G0006645.1 mouse_genomes_project 5 61573951 61577115 + Gm43838 lincRNA lincRNA MGP_AJ_T0008179.1 MGP_AJ_G0006663.1 mouse_genomes_project 5 72005655 72010215 + Gm42575 lincRNA lincRNA MGP_AJ_T0001666.1 MGP_AJ_G0001582.1 mouse_genomes_project 5 64895503 64897137 - TEC TEC MGP_AJ_T0073430.1 MGP_AJ_G0029868.1 mouse_genomes_project 5 110379331 110418824 + MGP_AJ_P0073430 Tpst2 protein_coding protein_coding MGP_AJ_T0073431.1 MGP_AJ_G0029868.1 mouse_genomes_project 5 110379344 110412442 + Tpst2 protein_coding retained_intron MGP_AJ_T0073432.1 MGP_AJ_G0029868.1 mouse_genomes_project 5 110379347 110418818 + MGP_AJ_P0073432 Tpst2 protein_coding protein_coding MGP_AJ_T0073433.1 MGP_AJ_G0029868.1 mouse_genomes_project 5 110391524 110411146 + MGP_AJ_P0073433 Tpst2 protein_coding protein_coding MGP_AJ_T0073434.1 MGP_AJ_G0029868.1 mouse_genomes_project 5 110407259 110418420 + MGP_AJ_P0073434 Tpst2 protein_coding protein_coding MGP_AJ_T0073435.1 MGP_AJ_G0029868.1 mouse_genomes_project 5 110411700 110413222 + MGP_AJ_P0073435 Tpst2 protein_coding nonsense_mediated_decay MGP_AJ_T0073436.1 MGP_AJ_G0029868.1 mouse_genomes_project 5 110416289 110418427 + Tpst2 protein_coding retained_intron MGP_AJ_T0076120.1 MGP_AJ_G0030380.1 mouse_genomes_project 5 149245283 149294577 + Rxfp2 protein_coding retained_intron MGP_AJ_T0076121.1 MGP_AJ_G0030380.1 mouse_genomes_project 5 149245283 149308689 + MGP_AJ_P0076121 Rxfp2 protein_coding protein_coding MGP_AJ_T0076122.1 MGP_AJ_G0030380.1 mouse_genomes_project 5 149245283 149308689 + MGP_AJ_P0076122 Rxfp2 protein_coding protein_coding MGP_AJ_T0076123.1 MGP_AJ_G0030380.1 mouse_genomes_project 5 149245314 149308681 + MGP_AJ_P0076123 Rxfp2 protein_coding protein_coding MGP_AJ_T0076124.1 MGP_AJ_G0030380.1 mouse_genomes_project 5 149292399 149295899 + Rxfp2 protein_coding retained_intron MGP_AJ_T0076125.1 MGP_AJ_G0030380.1 mouse_genomes_project 5 149308023 149309544 + Rxfp2 protein_coding processed_transcript MGP_AJ_T0073447.1 MGP_AJ_G0029871.1 mouse_genomes_project 5 110446967 110482614 + MGP_AJ_P0073447 Hps4 protein_coding protein_coding MGP_AJ_T0073448.1 MGP_AJ_G0029871.1 mouse_genomes_project 5 110446977 110448633 + Hps4 protein_coding processed_transcript MGP_AJ_T0073449.1 MGP_AJ_G0029871.1 mouse_genomes_project 5 110446979 110482614 + Hps4 protein_coding retained_intron MGP_AJ_T0073450.1 MGP_AJ_G0029871.1 mouse_genomes_project 5 110446979 110482614 + MGP_AJ_P0073450 Hps4 protein_coding protein_coding MGP_AJ_T0073451.1 MGP_AJ_G0029871.1 mouse_genomes_project 5 110446984 110448773 + Hps4 protein_coding processed_transcript MGP_AJ_T0073453.1 MGP_AJ_G0029871.1 mouse_genomes_project 5 110472940 110473970 + Hps4 protein_coding retained_intron MGP_AJ_T0073454.1 MGP_AJ_G0029871.1 mouse_genomes_project 5 110479534 110482601 + Hps4 protein_coding retained_intron MGP_AJ_T0100010.1 MGP_AJ_G0037976.1 mouse_genomes_project 5 57677613 57677721 - Gm23331 snRNA snRNA MGP_AJ_T0075487.1 MGP_AJ_G0030244.1 mouse_genomes_project 5 137863928 137979935 - MGP_AJ_P0075487 Prkar1b protein_coding protein_coding MGP_AJ_T0075488.1 MGP_AJ_G0030244.1 mouse_genomes_project 5 137865285 137870430 - Prkar1b protein_coding processed_transcript MGP_AJ_T0075489.1 MGP_AJ_G0030244.1 mouse_genomes_project 5 137890240 137978042 - MGP_AJ_P0075489 Prkar1b protein_coding protein_coding MGP_AJ_T0075490.1 MGP_AJ_G0030244.1 mouse_genomes_project 5 137898451 137980411 - MGP_AJ_P0075490 Prkar1b protein_coding protein_coding MGP_AJ_T0075491.1 MGP_AJ_G0030244.1 mouse_genomes_project 5 137910067 137962298 - MGP_AJ_P0075491 Prkar1b protein_coding protein_coding MGP_AJ_T0075492.1 MGP_AJ_G0030244.1 mouse_genomes_project 5 137958137 137980828 - MGP_AJ_P0075492 Prkar1b protein_coding protein_coding MGP_AJ_T0075493.1 MGP_AJ_G0030244.1 mouse_genomes_project 5 137958164 138000674 - MGP_AJ_P0075493 Prkar1b protein_coding protein_coding MGP_AJ_T0075494.1 MGP_AJ_G0030244.1 mouse_genomes_project 5 137958230 137980635 - MGP_AJ_P0075494 Prkar1b protein_coding protein_coding MGP_AJ_T0075495.1 MGP_AJ_G0030244.1 mouse_genomes_project 5 137998726 138000630 - Prkar1b protein_coding processed_transcript MGP_AJ_T0018125.1 MGP_AJ_G0015569.1 mouse_genomes_project 5 27972549 27975896 + Abhd1 processed_transcript processed_transcript MGP_AJ_T0018126.1 MGP_AJ_G0015569.1 mouse_genomes_project 5 27972549 27977584 + Abhd1 processed_transcript processed_transcript MGP_AJ_T0018127.1 MGP_AJ_G0015569.1 mouse_genomes_project 5 27972572 27976206 + Abhd1 processed_transcript processed_transcript MGP_AJ_T0018128.1 MGP_AJ_G0015569.1 mouse_genomes_project 5 27972572 27977582 + Abhd1 processed_transcript retained_intron MGP_AJ_T0018129.1 MGP_AJ_G0015569.1 mouse_genomes_project 5 27972575 27977192 + Abhd1 processed_transcript processed_transcript MGP_AJ_T0018130.1 MGP_AJ_G0015569.1 mouse_genomes_project 5 27972589 27977582 + Abhd1 processed_transcript processed_transcript MGP_AJ_T0018131.1 MGP_AJ_G0015569.1 mouse_genomes_project 5 27975866 27976677 + Abhd1 processed_transcript retained_intron MGP_AJ_T0008376.1 MGP_AJ_G0006800.1 mouse_genomes_project 5 123667572 123703878 - Gm42637 lincRNA lincRNA MGP_AJ_T0004758.1 MGP_AJ_G0004108.1 mouse_genomes_project 5 101801023 101807836 + Gm26703 antisense antisense MGP_AJ_T0004759.1 MGP_AJ_G0004108.1 mouse_genomes_project 5 101801097 101802734 + Gm26703 antisense antisense MGP_AJ_T0004760.1 MGP_AJ_G0004108.1 mouse_genomes_project 5 101805704 101811496 + Gm26703 antisense antisense MGP_AJ_T0071760.1 MGP_AJ_G0029518.1 mouse_genomes_project 5 50028576 50062640 + MGP_AJ_P0071760 Anapc4 protein_coding protein_coding MGP_AJ_T0071761.1 MGP_AJ_G0029518.1 mouse_genomes_project 5 50028690 50061585 + MGP_AJ_P0071761 Anapc4 protein_coding nonsense_mediated_decay MGP_AJ_T0071762.1 MGP_AJ_G0029518.1 mouse_genomes_project 5 50037502 50043410 + Anapc4 protein_coding retained_intron MGP_AJ_T0071763.1 MGP_AJ_G0029518.1 mouse_genomes_project 5 50037618 50045309 + MGP_AJ_P0071763 Anapc4 protein_coding protein_coding MGP_AJ_T0071764.1 MGP_AJ_G0029518.1 mouse_genomes_project 5 50037631 50045296 + MGP_AJ_P0071764 Anapc4 protein_coding protein_coding MGP_AJ_T0071765.1 MGP_AJ_G0029518.1 mouse_genomes_project 5 50042347 50043485 + Anapc4 protein_coding retained_intron MGP_AJ_T0071766.1 MGP_AJ_G0029518.1 mouse_genomes_project 5 50044933 50054005 + Anapc4 protein_coding retained_intron MGP_AJ_T0071767.1 MGP_AJ_G0029518.1 mouse_genomes_project 5 50050207 50051791 + Anapc4 protein_coding retained_intron MGP_AJ_T0071768.1 MGP_AJ_G0029518.1 mouse_genomes_project 5 50053897 50060839 + Anapc4 protein_coding retained_intron MGP_AJ_T0071769.1 MGP_AJ_G0029518.1 mouse_genomes_project 5 50055751 50057393 + Anapc4 protein_coding retained_intron MGP_AJ_T0071770.1 MGP_AJ_G0029518.1 mouse_genomes_project 5 50055993 50059498 + Anapc4 protein_coding retained_intron MGP_AJ_T0071771.1 MGP_AJ_G0029518.1 mouse_genomes_project 5 50060455 50061577 + Anapc4 protein_coding retained_intron MGP_AJ_T0015152.1 MGP_AJ_G0013247.1 mouse_genomes_project 5 123866273 123866970 + processed_pseudogene processed_pseudogene MGP_AJ_T0004754.1 MGP_AJ_G0004105.1 mouse_genomes_project 5 98538464 98544832 - 4930458D05Rik antisense antisense MGP_AJ_T0001613.1 MGP_AJ_G0001530.1 mouse_genomes_project 5 55131287 55133150 + TEC TEC MGP_AJ_T0075424.1 MGP_AJ_G0030230.1 mouse_genomes_project 5 136844715 136876847 - MGP_AJ_P0075424 protein_coding protein_coding MGP_AJ_T0070383.1 MGP_AJ_G0029284.1 mouse_genomes_project 5 18480949 18489828 + Lrrc17 protein_coding processed_transcript MGP_AJ_T0070384.1 MGP_AJ_G0029284.1 mouse_genomes_project 5 18480953 18514235 + MGP_AJ_P0070384 Lrrc17 protein_coding protein_coding MGP_AJ_T0001749.1 MGP_AJ_G0001664.1 mouse_genomes_project 5 105708402 105709567 + TEC TEC MGP_AJ_T0074998.1 MGP_AJ_G0030146.1 mouse_genomes_project 5 133780460 133782753 - MGP_AJ_P0074998 Fzd9 protein_coding protein_coding MGP_AJ_T0004697.1 MGP_AJ_G0004061.1 mouse_genomes_project 5 49626091 49627952 + Gm43683 antisense antisense MGP_AJ_T0102643.1 MGP_AJ_G0040385.1 mouse_genomes_project 5 85557547 85561967 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0102642.1 MGP_AJ_G0040384.1 mouse_genomes_project 5 84698072 84699732 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0001667.1 MGP_AJ_G0001583.1 mouse_genomes_project 5 65020805 65022560 - TEC TEC MGP_AJ_T0072982.1 MGP_AJ_G0029766.1 mouse_genomes_project 5 101332303 101340277 - MGP_AJ_P0072982 1700016H13Rik protein_coding protein_coding MGP_AJ_T0072983.1 MGP_AJ_G0029766.1 mouse_genomes_project 5 101332693 101339999 - MGP_AJ_P0072983 1700016H13Rik protein_coding protein_coding MGP_AJ_T0072984.1 MGP_AJ_G0029766.1 mouse_genomes_project 5 101332851 101339990 - MGP_AJ_P0072984 1700016H13Rik protein_coding nonsense_mediated_decay MGP_AJ_T0072985.1 MGP_AJ_G0029766.1 mouse_genomes_project 5 101332857 101340015 - MGP_AJ_P0072985 1700016H13Rik protein_coding protein_coding MGP_AJ_T0072986.1 MGP_AJ_G0029766.1 mouse_genomes_project 5 101332962 101339990 - MGP_AJ_P0072986 1700016H13Rik protein_coding nonsense_mediated_decay MGP_AJ_T0072987.1 MGP_AJ_G0029766.1 mouse_genomes_project 5 101333035 101339990 - MGP_AJ_P0072987 1700016H13Rik protein_coding protein_coding MGP_AJ_T0072988.1 MGP_AJ_G0029766.1 mouse_genomes_project 5 101333035 101339991 - MGP_AJ_P0072988 1700016H13Rik protein_coding nonsense_mediated_decay MGP_AJ_T0001750.1 MGP_AJ_G0001665.1 mouse_genomes_project 5 106173291 106174672 - TEC TEC MGP_AJ_T0004637.1 MGP_AJ_G0004015.1 mouse_genomes_project 5 11567357 11594031 - Gm26954 antisense antisense MGP_AJ_T0004638.1 MGP_AJ_G0004015.1 mouse_genomes_project 5 11584322 11594016 - Gm26954 antisense antisense MGP_AJ_T0070270.1 MGP_AJ_G0029256.1 mouse_genomes_project 5 6336340 6579951 - MGP_AJ_P0070270 Grm3 protein_coding protein_coding MGP_AJ_T0070285.1 MGP_AJ_G0029260.1 mouse_genomes_project 5 10891779 11129187 + Sema3e protein_coding retained_intron MGP_AJ_T0070286.1 MGP_AJ_G0029260.1 mouse_genomes_project 5 10891779 11131562 + MGP_AJ_P0070286 Sema3e protein_coding protein_coding MGP_AJ_T0070287.1 MGP_AJ_G0029260.1 mouse_genomes_project 5 11104990 11106840 + Sema3e protein_coding retained_intron MGP_AJ_T0014930.1 MGP_AJ_G0013025.1 mouse_genomes_project 5 29391557 29391746 - processed_pseudogene processed_pseudogene MGP_AJ_T0076165.1 MGP_AJ_G0030385.1 mouse_genomes_project 5 149842079 149881616 - N4bp2l2 protein_coding processed_transcript MGP_AJ_T0076166.1 MGP_AJ_G0030385.1 mouse_genomes_project 5 149870024 149899703 - MGP_AJ_P0076166 N4bp2l2 protein_coding protein_coding MGP_AJ_T0076167.1 MGP_AJ_G0030385.1 mouse_genomes_project 5 149874788 149882358 - N4bp2l2 protein_coding retained_intron MGP_AJ_T0076168.1 MGP_AJ_G0030385.1 mouse_genomes_project 5 149877052 149895578 - MGP_AJ_P0076168 N4bp2l2 protein_coding protein_coding MGP_AJ_T0076169.1 MGP_AJ_G0030385.1 mouse_genomes_project 5 149877065 149881890 - N4bp2l2 protein_coding retained_intron MGP_AJ_T0076170.1 MGP_AJ_G0030385.1 mouse_genomes_project 5 149882306 149899668 - N4bp2l2 protein_coding retained_intron MGP_AJ_T0076171.1 MGP_AJ_G0030385.1 mouse_genomes_project 5 149896507 149899437 - MGP_AJ_P0076171 N4bp2l2 protein_coding protein_coding MGP_AJ_T0076172.1 MGP_AJ_G0030385.1 mouse_genomes_project 5 149899265 149900274 - N4bp2l2 protein_coding retained_intron MGP_AJ_T0010713.1 MGP_AJ_G0008835.1 mouse_genomes_project 5 122899122 122899202 - Gm27486 miRNA miRNA MGP_AJ_T0072500.1 MGP_AJ_G0029655.1 mouse_genomes_project 5 84911460 84927089 - MGP_AJ_P0072500 Sult1e1 protein_coding protein_coding MGP_AJ_T0001858.1 MGP_AJ_G0001772.1 mouse_genomes_project 5 130455150 130458987 - TEC TEC MGP_AJ_T0015096.1 MGP_AJ_G0013191.1 mouse_genomes_project 5 103782661 103783271 - processed_pseudogene processed_pseudogene MGP_AJ_T0073423.1 MGP_AJ_G0029865.1 mouse_genomes_project 5 109825851 109826502 + MGP_AJ_P0073423 Gm26897 protein_coding protein_coding MGP_AJ_T0014973.1 MGP_AJ_G0013068.1 mouse_genomes_project 5 48208718 48209199 + processed_pseudogene processed_pseudogene MGP_AJ_T0008372.1 MGP_AJ_G0006797.1 mouse_genomes_project 5 122503195 122548259 + Gm34086 lincRNA lincRNA MGP_AJ_T0008436.1 MGP_AJ_G0006840.1 mouse_genomes_project 5 142102038 142103011 - Rbakdn lincRNA lincRNA MGP_AJ_T0008437.1 MGP_AJ_G0006840.1 mouse_genomes_project 5 142102038 142102963 - Rbakdn lincRNA lincRNA MGP_AJ_T0001599.1 MGP_AJ_G0001516.1 mouse_genomes_project 5 51122849 51126909 + TEC TEC MGP_AJ_T0004653.1 MGP_AJ_G0004028.1 mouse_genomes_project 5 25471791 25928650 + antisense antisense MGP_AJ_T0004654.1 MGP_AJ_G0004028.1 mouse_genomes_project 5 25480492 25709849 + antisense antisense MGP_AJ_T0008459.1 MGP_AJ_G0006860.1 mouse_genomes_project 5 148139807 148193710 - Gm15406 lincRNA lincRNA MGP_AJ_T0008461.1 MGP_AJ_G0006860.1 mouse_genomes_project 5 148145573 148193653 - Gm15406 lincRNA lincRNA MGP_AJ_T0074209.1 MGP_AJ_G0030017.1 mouse_genomes_project 5 120831148 120853990 + MGP_AJ_P0074209 Anapc7 protein_coding protein_coding MGP_AJ_T0074210.1 MGP_AJ_G0030017.1 mouse_genomes_project 5 120831899 120853990 + MGP_AJ_P0074210 Anapc7 protein_coding protein_coding MGP_AJ_T0074211.1 MGP_AJ_G0030017.1 mouse_genomes_project 5 120831936 120852512 + MGP_AJ_P0074211 Anapc7 protein_coding protein_coding MGP_AJ_T0074212.1 MGP_AJ_G0030017.1 mouse_genomes_project 5 120848451 120849563 + Anapc7 protein_coding retained_intron MGP_AJ_T0074213.1 MGP_AJ_G0030017.1 mouse_genomes_project 5 120849216 120850881 + Anapc7 protein_coding retained_intron MGP_AJ_T0074214.1 MGP_AJ_G0030017.1 mouse_genomes_project 5 120850452 120850860 + MGP_AJ_P0074214 Anapc7 protein_coding protein_coding MGP_AJ_T0001747.1 MGP_AJ_G0001662.1 mouse_genomes_project 5 105522527 105523524 + TEC TEC MGP_AJ_T0101831.1 MGP_AJ_G0039732.1 mouse_genomes_project 5 85191428 85194085 + transcribed_processed_pseudogene processed_transcript MGP_AJ_T0101832.1 MGP_AJ_G0039732.1 mouse_genomes_project 5 85191587 85192712 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0008306.1 MGP_AJ_G0006754.1 mouse_genomes_project 5 110318168 110319583 + lincRNA lincRNA MGP_AJ_T0070551.1 MGP_AJ_G0029312.1 mouse_genomes_project 5 21424812 21475625 + MGP_AJ_P0070551 Agap3 protein_coding protein_coding MGP_AJ_T0070552.1 MGP_AJ_G0029312.1 mouse_genomes_project 5 21424842 21456770 + MGP_AJ_P0070552 Agap3 protein_coding unknown_likely_coding MGP_AJ_T0070553.1 MGP_AJ_G0029312.1 mouse_genomes_project 5 21424969 21455906 + Agap3 protein_coding processed_transcript MGP_AJ_T0070554.1 MGP_AJ_G0029312.1 mouse_genomes_project 5 21447914 21456762 + MGP_AJ_P0070554 Agap3 protein_coding protein_coding MGP_AJ_T0070555.1 MGP_AJ_G0029312.1 mouse_genomes_project 5 21453453 21475615 + MGP_AJ_P0070555 Agap3 protein_coding protein_coding MGP_AJ_T0070556.1 MGP_AJ_G0029312.1 mouse_genomes_project 5 21453872 21456760 + Agap3 protein_coding processed_transcript MGP_AJ_T0015013.1 MGP_AJ_G0013108.1 mouse_genomes_project 5 65245179 65245746 - processed_pseudogene processed_pseudogene MGP_AJ_T0011610.1 MGP_AJ_G0009732.1 mouse_genomes_project 5 110330522 110330657 - Gm27357 misc_RNA misc_RNA MGP_AJ_T0014876.1 MGP_AJ_G0012971.1 mouse_genomes_project 5 16420477 16422146 - processed_pseudogene processed_pseudogene MGP_AJ_T0075252.1 MGP_AJ_G0030194.1 mouse_genomes_project 5 135936654 136038195 - MGP_AJ_P0075252 Zan protein_coding protein_coding MGP_AJ_T0075253.1 MGP_AJ_G0030194.1 mouse_genomes_project 5 135936654 136037726 - MGP_AJ_P0075253 Zan protein_coding protein_coding MGP_AJ_T0075254.1 MGP_AJ_G0030194.1 mouse_genomes_project 5 135957043 135961068 - Zan protein_coding retained_intron MGP_AJ_T0075255.1 MGP_AJ_G0030194.1 mouse_genomes_project 5 135969897 135972582 - MGP_AJ_P0075255 Zan protein_coding nonsense_mediated_decay MGP_AJ_T0075256.1 MGP_AJ_G0030194.1 mouse_genomes_project 5 135996667 136012374 - Zan protein_coding retained_intron MGP_AJ_T0001469.1 MGP_AJ_G0001390.1 mouse_genomes_project 5 17670105 17670604 + TEC TEC MGP_AJ_T0072426.1 MGP_AJ_G0029629.1 mouse_genomes_project 5 80537325 80617064 - MGP_AJ_P0072426 Tecrl protein_coding protein_coding MGP_AJ_T0072427.1 MGP_AJ_G0029629.1 mouse_genomes_project 5 80549176 80616825 - MGP_AJ_P0072427 Tecrl protein_coding protein_coding MGP_AJ_T0008392.1 MGP_AJ_G0006809.1 mouse_genomes_project 5 125306260 125339362 + Gm42954 lincRNA lincRNA MGP_AJ_T0004836.1 MGP_AJ_G0004163.1 mouse_genomes_project 5 123485066 123485596 + Gm42838 antisense antisense MGP_AJ_T0073784.1 MGP_AJ_G0029938.1 mouse_genomes_project 5 113743827 113762891 + Gcn1l1 protein_coding retained_intron MGP_AJ_T0073785.1 MGP_AJ_G0029938.1 mouse_genomes_project 5 113743829 113759933 + Gcn1l1 protein_coding retained_intron MGP_AJ_T0073786.1 MGP_AJ_G0029938.1 mouse_genomes_project 5 113743831 113763400 + Gcn1l1 protein_coding retained_intron MGP_AJ_T0073787.1 MGP_AJ_G0029938.1 mouse_genomes_project 5 113743844 113801330 + MGP_AJ_P0073787 Gcn1l1 protein_coding protein_coding MGP_AJ_T0073788.1 MGP_AJ_G0029938.1 mouse_genomes_project 5 113743858 113745776 + Gcn1l1 protein_coding retained_intron MGP_AJ_T0073789.1 MGP_AJ_G0029938.1 mouse_genomes_project 5 113761049 113766071 + Gcn1l1 protein_coding processed_transcript MGP_AJ_T0073790.1 MGP_AJ_G0029938.1 mouse_genomes_project 5 113784351 113801324 + Gcn1l1 protein_coding processed_transcript MGP_AJ_T0073791.1 MGP_AJ_G0029938.1 mouse_genomes_project 5 113788494 113789277 + Gcn1l1 protein_coding retained_intron MGP_AJ_T0073792.1 MGP_AJ_G0029938.1 mouse_genomes_project 5 113790503 113792062 + Gcn1l1 protein_coding processed_transcript MGP_AJ_T0073793.1 MGP_AJ_G0029938.1 mouse_genomes_project 5 113793544 113794692 + Gcn1l1 protein_coding retained_intron MGP_AJ_T0102646.1 MGP_AJ_G0040388.1 mouse_genomes_project 5 107367979 107373745 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0072783.1 MGP_AJ_G0029725.1 mouse_genomes_project 5 90653313 90677136 - MGP_AJ_P0072783 Ccni protein_coding protein_coding MGP_AJ_T0072784.1 MGP_AJ_G0029725.1 mouse_genomes_project 5 90658085 90658853 - Ccni protein_coding retained_intron MGP_AJ_T0072785.1 MGP_AJ_G0029725.1 mouse_genomes_project 5 90658394 90673992 - MGP_AJ_P0072785 Ccni protein_coding protein_coding MGP_AJ_T0072786.1 MGP_AJ_G0029725.1 mouse_genomes_project 5 90660196 90677069 - MGP_AJ_P0072786 Ccni protein_coding protein_coding MGP_AJ_T0072376.1 MGP_AJ_G0029623.1 mouse_genomes_project 5 74473972 74481191 - MGP_AJ_P0072376 Spink2 protein_coding protein_coding MGP_AJ_T0072377.1 MGP_AJ_G0029623.1 mouse_genomes_project 5 74473972 74481158 - MGP_AJ_P0072377 Spink2 protein_coding protein_coding MGP_AJ_T0072378.1 MGP_AJ_G0029623.1 mouse_genomes_project 5 74473977 74480925 - MGP_AJ_P0072378 Spink2 protein_coding protein_coding MGP_AJ_T0073071.1 MGP_AJ_G0029795.1 mouse_genomes_project 5 104431849 104511348 - MGP_AJ_P0073071 Zfp644 protein_coding protein_coding MGP_AJ_T0073072.1 MGP_AJ_G0029795.1 mouse_genomes_project 5 104431850 104512203 - MGP_AJ_P0073072 Zfp644 protein_coding protein_coding MGP_AJ_T0073073.1 MGP_AJ_G0029795.1 mouse_genomes_project 5 104431852 104511970 - MGP_AJ_P0073073 Zfp644 protein_coding protein_coding MGP_AJ_T0073074.1 MGP_AJ_G0029795.1 mouse_genomes_project 5 104432181 104439491 - Zfp644 protein_coding processed_transcript MGP_AJ_T0073075.1 MGP_AJ_G0029795.1 mouse_genomes_project 5 104433075 104512178 - Zfp644 protein_coding processed_transcript MGP_AJ_T0073076.1 MGP_AJ_G0029795.1 mouse_genomes_project 5 104433341 104492267 - MGP_AJ_P0073076 Zfp644 protein_coding unknown_likely_coding MGP_AJ_T0073077.1 MGP_AJ_G0029795.1 mouse_genomes_project 5 104451901 104512199 - MGP_AJ_P0073077 Zfp644 protein_coding protein_coding MGP_AJ_T0073078.1 MGP_AJ_G0029795.1 mouse_genomes_project 5 104452912 104511937 - MGP_AJ_P0073078 Zfp644 protein_coding protein_coding MGP_AJ_T0073079.1 MGP_AJ_G0029795.1 mouse_genomes_project 5 104453163 104483002 - MGP_AJ_P0073079 Zfp644 protein_coding protein_coding MGP_AJ_T0073080.1 MGP_AJ_G0029795.1 mouse_genomes_project 5 104453331 104512023 - MGP_AJ_P0073080 Zfp644 protein_coding protein_coding MGP_AJ_T0073081.1 MGP_AJ_G0029795.1 mouse_genomes_project 5 104453378 104511937 - MGP_AJ_P0073081 Zfp644 protein_coding protein_coding MGP_AJ_T0073082.1 MGP_AJ_G0029795.1 mouse_genomes_project 5 104453521 104512023 - MGP_AJ_P0073082 Zfp644 protein_coding protein_coding MGP_AJ_T0073083.1 MGP_AJ_G0029795.1 mouse_genomes_project 5 104504112 104510389 - Zfp644 protein_coding retained_intron MGP_AJ_T0073084.1 MGP_AJ_G0029795.1 mouse_genomes_project 5 104505194 104511539 - Zfp644 protein_coding retained_intron MGP_AJ_T0073085.1 MGP_AJ_G0029795.1 mouse_genomes_project 5 104505965 104511919 - Zfp644 protein_coding processed_transcript MGP_AJ_T0073086.1 MGP_AJ_G0029795.1 mouse_genomes_project 5 104505978 104511917 - Zfp644 protein_coding processed_transcript MGP_AJ_T0073087.1 MGP_AJ_G0029795.1 mouse_genomes_project 5 104510420 104512660 - Zfp644 protein_coding processed_transcript MGP_AJ_T0073088.1 MGP_AJ_G0029795.1 mouse_genomes_project 5 104510725 104511385 - Zfp644 protein_coding processed_transcript MGP_AJ_T0073070.1 MGP_AJ_G0029794.1 mouse_genomes_project 5 104424129 104424233 + MGP_AJ_P0073070 Gm17304 protein_coding protein_coding MGP_AJ_T0075518.1 MGP_AJ_G0030247.1 mouse_genomes_project 5 138104458 138122775 + MGP_AJ_P0075518 Get4 protein_coding protein_coding MGP_AJ_T0075519.1 MGP_AJ_G0030247.1 mouse_genomes_project 5 138104504 138119637 + MGP_AJ_P0075519 Get4 protein_coding protein_coding MGP_AJ_T0075520.1 MGP_AJ_G0030247.1 mouse_genomes_project 5 138104599 138122663 + MGP_AJ_P0075520 Get4 protein_coding unknown_likely_coding MGP_AJ_T0075521.1 MGP_AJ_G0030247.1 mouse_genomes_project 5 138105645 138121825 + MGP_AJ_P0075521 Get4 protein_coding protein_coding MGP_AJ_T0075522.1 MGP_AJ_G0030247.1 mouse_genomes_project 5 138119362 138119934 + Get4 protein_coding retained_intron MGP_AJ_T0075523.1 MGP_AJ_G0030247.1 mouse_genomes_project 5 138119426 138122198 + Get4 protein_coding retained_intron MGP_AJ_T0015078.1 MGP_AJ_G0013173.1 mouse_genomes_project 5 96121974 96122355 + processed_pseudogene processed_pseudogene MGP_AJ_T0075795.1 MGP_AJ_G0030309.1 mouse_genomes_project 5 142808508 142833083 + Pms2 protein_coding retained_intron MGP_AJ_T0075796.1 MGP_AJ_G0030309.1 mouse_genomes_project 5 142808508 142833083 + Pms2 protein_coding processed_transcript MGP_AJ_T0075797.1 MGP_AJ_G0030309.1 mouse_genomes_project 5 142808508 142833083 + MGP_AJ_P0075797 Pms2 protein_coding protein_coding MGP_AJ_T0075798.1 MGP_AJ_G0030309.1 mouse_genomes_project 5 142808534 142830325 + Pms2 protein_coding processed_transcript MGP_AJ_T0075799.1 MGP_AJ_G0030309.1 mouse_genomes_project 5 142808534 142830563 + Pms2 protein_coding processed_transcript MGP_AJ_T0075800.1 MGP_AJ_G0030309.1 mouse_genomes_project 5 142808543 142816185 + Pms2 protein_coding processed_transcript MGP_AJ_T0075801.1 MGP_AJ_G0030309.1 mouse_genomes_project 5 142808548 142813309 + Pms2 protein_coding processed_transcript MGP_AJ_T0075802.1 MGP_AJ_G0030309.1 mouse_genomes_project 5 142808569 142825397 + Pms2 protein_coding retained_intron MGP_AJ_T0075803.1 MGP_AJ_G0030309.1 mouse_genomes_project 5 142808569 142812846 + Pms2 protein_coding retained_intron MGP_AJ_T0075804.1 MGP_AJ_G0030309.1 mouse_genomes_project 5 142808601 142830279 + MGP_AJ_P0075804 Pms2 protein_coding protein_coding MGP_AJ_T0075805.1 MGP_AJ_G0030309.1 mouse_genomes_project 5 142808705 142812015 + Pms2 protein_coding processed_transcript MGP_AJ_T0075806.1 MGP_AJ_G0030309.1 mouse_genomes_project 5 142811872 142812467 + Pms2 protein_coding retained_intron MGP_AJ_T0075807.1 MGP_AJ_G0030309.1 mouse_genomes_project 5 142818105 142824006 + MGP_AJ_P0075807 Pms2 protein_coding protein_coding MGP_AJ_T0001789.1 MGP_AJ_G0001704.1 mouse_genomes_project 5 116846925 116851878 + TEC TEC MGP_AJ_T0071250.1 MGP_AJ_G0029433.1 mouse_genomes_project 5 31684427 31710272 + MGP_AJ_P0071250 Sh3bp2 protein_coding protein_coding MGP_AJ_T0071251.1 MGP_AJ_G0029433.1 mouse_genomes_project 5 31684435 31722213 + MGP_AJ_P0071251 Sh3bp2 protein_coding protein_coding MGP_AJ_T0071252.1 MGP_AJ_G0029433.1 mouse_genomes_project 5 31701954 31716293 + Sh3bp2 protein_coding retained_intron MGP_AJ_T0071253.1 MGP_AJ_G0029433.1 mouse_genomes_project 5 31701954 31711318 + MGP_AJ_P0071253 Sh3bp2 protein_coding nonsense_mediated_decay MGP_AJ_T0071254.1 MGP_AJ_G0029433.1 mouse_genomes_project 5 31701954 31722197 + MGP_AJ_P0071254 Sh3bp2 protein_coding protein_coding MGP_AJ_T0071255.1 MGP_AJ_G0029433.1 mouse_genomes_project 5 31708165 31722197 + MGP_AJ_P0071255 Sh3bp2 protein_coding protein_coding MGP_AJ_T0071256.1 MGP_AJ_G0029433.1 mouse_genomes_project 5 31708277 31722210 + MGP_AJ_P0071256 Sh3bp2 protein_coding protein_coding MGP_AJ_T0071257.1 MGP_AJ_G0029433.1 mouse_genomes_project 5 31710116 31711364 + Sh3bp2 protein_coding retained_intron MGP_AJ_T0075003.1 MGP_AJ_G0030148.1 mouse_genomes_project 5 133887292 133902759 + MGP_AJ_P0075003 Trim50 protein_coding protein_coding MGP_AJ_T0075004.1 MGP_AJ_G0030148.1 mouse_genomes_project 5 133887293 133903110 + MGP_AJ_P0075004 Trim50 protein_coding protein_coding MGP_AJ_T0001471.1 MGP_AJ_G0001392.1 mouse_genomes_project 5 18073867 18074814 + TEC TEC MGP_AJ_T0073113.1 MGP_AJ_G0029800.1 mouse_genomes_project 5 105238764 105249649 + MGP_AJ_P0073113 Ephx4 protein_coding protein_coding MGP_AJ_T0073114.1 MGP_AJ_G0029800.1 mouse_genomes_project 5 105239524 105266195 + MGP_AJ_P0073114 Ephx4 protein_coding protein_coding MGP_AJ_T0073115.1 MGP_AJ_G0029800.1 mouse_genomes_project 5 105239803 105249557 + MGP_AJ_P0073115 Ephx4 protein_coding protein_coding MGP_AJ_T0073116.1 MGP_AJ_G0029800.1 mouse_genomes_project 5 105241813 105249617 + MGP_AJ_P0073116 Ephx4 protein_coding protein_coding MGP_AJ_T0074322.1 MGP_AJ_G0030031.1 mouse_genomes_project 5 121602887 121695639 + Psmd9 protein_coding processed_transcript MGP_AJ_T0074329.1 MGP_AJ_G0030031.1 mouse_genomes_project 5 121684265 121701339 + Psmd9 protein_coding processed_transcript MGP_AJ_T0074330.1 MGP_AJ_G0030031.1 mouse_genomes_project 5 121684333 121685102 + Psmd9 protein_coding retained_intron MGP_AJ_T0074331.1 MGP_AJ_G0030031.1 mouse_genomes_project 5 121684347 121706095 + MGP_AJ_P0074331 Psmd9 protein_coding protein_coding MGP_AJ_T0074332.1 MGP_AJ_G0030031.1 mouse_genomes_project 5 121685024 121686930 + Psmd9 protein_coding TEC MGP_AJ_T0074333.1 MGP_AJ_G0030031.1 mouse_genomes_project 5 121697892 121706065 + MGP_AJ_P0074333 Psmd9 protein_coding protein_coding MGP_AJ_T0074610.1 MGP_AJ_G0030077.1 mouse_genomes_project 5 123845104 123865344 - MGP_AJ_P0074610 Dhx37 protein_coding protein_coding MGP_AJ_T0074611.1 MGP_AJ_G0030077.1 mouse_genomes_project 5 123845993 123847103 - MGP_AJ_P0074611 Dhx37 protein_coding protein_coding MGP_AJ_T0074612.1 MGP_AJ_G0030077.1 mouse_genomes_project 5 123847505 123850055 - Dhx37 protein_coding retained_intron MGP_AJ_T0074613.1 MGP_AJ_G0030077.1 mouse_genomes_project 5 123854768 123857938 - MGP_AJ_P0074613 Dhx37 protein_coding nonsense_mediated_decay MGP_AJ_T0001851.1 MGP_AJ_G0001765.1 mouse_genomes_project 5 130112603 130115461 - TEC TEC MGP_AJ_T0011599.1 MGP_AJ_G0009721.1 mouse_genomes_project 5 98112169 98112243 + Gm27553 misc_RNA misc_RNA MGP_AJ_T0073950.1 MGP_AJ_G0029968.1 mouse_genomes_project 5 118727471 118747716 - MGP_AJ_P0073950 Plbd2 protein_coding protein_coding MGP_AJ_T0073951.1 MGP_AJ_G0029968.1 mouse_genomes_project 5 118729436 118747692 - Plbd2 protein_coding retained_intron MGP_AJ_T0073952.1 MGP_AJ_G0029968.1 mouse_genomes_project 5 118731488 118747703 - Plbd2 protein_coding retained_intron MGP_AJ_T0073572.1 MGP_AJ_G0029896.1 mouse_genomes_project 5 112254176 112258448 - MGP_AJ_P0073572 Alkbh2 protein_coding protein_coding MGP_AJ_T0073573.1 MGP_AJ_G0029896.1 mouse_genomes_project 5 112254185 112258490 - MGP_AJ_P0073573 Alkbh2 protein_coding protein_coding MGP_AJ_T0073574.1 MGP_AJ_G0029896.1 mouse_genomes_project 5 112257877 112258453 - MGP_AJ_P0073574 Alkbh2 protein_coding protein_coding MGP_AJ_T0014909.1 MGP_AJ_G0013004.1 mouse_genomes_project 5 22365510 22365787 + processed_pseudogene processed_pseudogene MGP_AJ_T0100022.1 MGP_AJ_G0037988.1 mouse_genomes_project 5 77066809 77066958 - Gm23429 snRNA snRNA MGP_AJ_T0071191.1 MGP_AJ_G0029423.1 mouse_genomes_project 5 31133509 31135100 + MGP_AJ_P0071191 Gm1673 protein_coding protein_coding MGP_AJ_T0071192.1 MGP_AJ_G0029423.1 mouse_genomes_project 5 31133513 31135096 + Gm1673 protein_coding retained_intron MGP_AJ_T0071193.1 MGP_AJ_G0029423.1 mouse_genomes_project 5 31133546 31135096 + MGP_AJ_P0071193 Gm1673 protein_coding protein_coding MGP_AJ_T0071194.1 MGP_AJ_G0029423.1 mouse_genomes_project 5 31133550 31135093 + MGP_AJ_P0071194 Gm1673 protein_coding protein_coding MGP_AJ_T0071195.1 MGP_AJ_G0029423.1 mouse_genomes_project 5 31133586 31135097 + MGP_AJ_P0071195 Gm1673 protein_coding nonsense_mediated_decay MGP_AJ_T0071196.1 MGP_AJ_G0029423.1 mouse_genomes_project 5 31133610 31135096 + MGP_AJ_P0071196 Gm1673 protein_coding protein_coding MGP_AJ_T0001859.1 MGP_AJ_G0001773.1 mouse_genomes_project 5 130470468 130477300 - TEC TEC MGP_AJ_T0075247.1 MGP_AJ_G0030193.1 mouse_genomes_project 5 135907083 135931584 + MGP_AJ_P0075247 Ephb4 protein_coding protein_coding MGP_AJ_T0075248.1 MGP_AJ_G0030193.1 mouse_genomes_project 5 135907115 135936687 + MGP_AJ_P0075248 Ephb4 protein_coding nonsense_mediated_decay MGP_AJ_T0075249.1 MGP_AJ_G0030193.1 mouse_genomes_project 5 135907146 135931576 + MGP_AJ_P0075249 Ephb4 protein_coding protein_coding MGP_AJ_T0075250.1 MGP_AJ_G0030193.1 mouse_genomes_project 5 135907404 135931368 + MGP_AJ_P0075250 Ephb4 protein_coding protein_coding MGP_AJ_T0075251.1 MGP_AJ_G0030193.1 mouse_genomes_project 5 135907487 135931588 + MGP_AJ_P0075251 Ephb4 protein_coding protein_coding MGP_AJ_T0100069.1 MGP_AJ_G0038035.1 mouse_genomes_project 5 150924040 150924147 - Gm24242 snRNA snRNA MGP_AJ_T0076080.1 MGP_AJ_G0030373.1 mouse_genomes_project 5 148389984 148421535 + MGP_AJ_P0076080 Uspl1 protein_coding protein_coding MGP_AJ_T0076081.1 MGP_AJ_G0030373.1 mouse_genomes_project 5 148389995 148399645 + MGP_AJ_P0076081 Uspl1 protein_coding protein_coding MGP_AJ_T0076082.1 MGP_AJ_G0030373.1 mouse_genomes_project 5 148389995 148421535 + MGP_AJ_P0076082 Uspl1 protein_coding nonsense_mediated_decay MGP_AJ_T0076083.1 MGP_AJ_G0030373.1 mouse_genomes_project 5 148390098 148399412 + Uspl1 protein_coding processed_transcript MGP_AJ_T0076084.1 MGP_AJ_G0030373.1 mouse_genomes_project 5 148391570 148394322 + Uspl1 protein_coding retained_intron MGP_AJ_T0076085.1 MGP_AJ_G0030373.1 mouse_genomes_project 5 148393092 148421546 + MGP_AJ_P0076085 Uspl1 protein_coding protein_coding MGP_AJ_T0076086.1 MGP_AJ_G0030373.1 mouse_genomes_project 5 148394176 148395458 + Uspl1 protein_coding retained_intron MGP_AJ_T0076087.1 MGP_AJ_G0030373.1 mouse_genomes_project 5 148396653 148421539 + Uspl1 protein_coding retained_intron MGP_AJ_T0073202.1 MGP_AJ_G0029817.1 mouse_genomes_project 5 106174531 106210240 + MGP_AJ_P0073202 Pigg protein_coding protein_coding MGP_AJ_T0073203.1 MGP_AJ_G0029817.1 mouse_genomes_project 5 106174531 106211362 + MGP_AJ_P0073203 Pigg protein_coding protein_coding MGP_AJ_T0073204.1 MGP_AJ_G0029817.1 mouse_genomes_project 5 106174558 106210245 + MGP_AJ_P0073204 Pigg protein_coding protein_coding MGP_AJ_T0075652.1 MGP_AJ_G0030278.1 mouse_genomes_project 5 140140483 141122344 + MGP_AJ_P0075652 Sdk1 protein_coding protein_coding MGP_AJ_T0075653.1 MGP_AJ_G0030278.1 mouse_genomes_project 5 140140911 140482171 + Sdk1 protein_coding retained_intron MGP_AJ_T0075654.1 MGP_AJ_G0030278.1 mouse_genomes_project 5 140269852 140860730 + Sdk1 protein_coding retained_intron MGP_AJ_T0075655.1 MGP_AJ_G0030278.1 mouse_genomes_project 5 140760824 141119951 + MGP_AJ_P0075655 Sdk1 protein_coding protein_coding MGP_AJ_T0075222.1 MGP_AJ_G0030190.1 mouse_genomes_project 5 135847579 135859558 - MGP_AJ_P0075222 Srrt protein_coding protein_coding MGP_AJ_T0075223.1 MGP_AJ_G0030190.1 mouse_genomes_project 5 135847586 135859550 - MGP_AJ_P0075223 Srrt protein_coding protein_coding MGP_AJ_T0075224.1 MGP_AJ_G0030190.1 mouse_genomes_project 5 135847590 135859550 - MGP_AJ_P0075224 Srrt protein_coding protein_coding MGP_AJ_T0075225.1 MGP_AJ_G0030190.1 mouse_genomes_project 5 135847592 135859311 - MGP_AJ_P0075225 Srrt protein_coding nonsense_mediated_decay MGP_AJ_T0075226.1 MGP_AJ_G0030190.1 mouse_genomes_project 5 135847600 135851521 - MGP_AJ_P0075226 Srrt protein_coding protein_coding MGP_AJ_T0075227.1 MGP_AJ_G0030190.1 mouse_genomes_project 5 135847862 135849301 - MGP_AJ_P0075227 Srrt protein_coding protein_coding MGP_AJ_T0075228.1 MGP_AJ_G0030190.1 mouse_genomes_project 5 135847893 135848810 - Srrt protein_coding retained_intron MGP_AJ_T0075229.1 MGP_AJ_G0030190.1 mouse_genomes_project 5 135848111 135849093 - Srrt protein_coding retained_intron MGP_AJ_T0075230.1 MGP_AJ_G0030190.1 mouse_genomes_project 5 135848154 135848729 - Srrt protein_coding retained_intron MGP_AJ_T0075231.1 MGP_AJ_G0030190.1 mouse_genomes_project 5 135848342 135849443 - Srrt protein_coding retained_intron MGP_AJ_T0075232.1 MGP_AJ_G0030190.1 mouse_genomes_project 5 135849499 135850423 - Srrt protein_coding retained_intron MGP_AJ_T0075233.1 MGP_AJ_G0030190.1 mouse_genomes_project 5 135849707 135852194 - MGP_AJ_P0075233 Srrt protein_coding nonsense_mediated_decay MGP_AJ_T0075234.1 MGP_AJ_G0030190.1 mouse_genomes_project 5 135849707 135851885 - MGP_AJ_P0075234 Srrt protein_coding nonsense_mediated_decay MGP_AJ_T0075235.1 MGP_AJ_G0030190.1 mouse_genomes_project 5 135850134 135851762 - Srrt protein_coding retained_intron MGP_AJ_T0075236.1 MGP_AJ_G0030190.1 mouse_genomes_project 5 135851461 135859363 - Srrt protein_coding retained_intron MGP_AJ_T0075237.1 MGP_AJ_G0030190.1 mouse_genomes_project 5 135851748 135852607 - Srrt protein_coding retained_intron MGP_AJ_T0075238.1 MGP_AJ_G0030190.1 mouse_genomes_project 5 135854529 135859524 - MGP_AJ_P0075238 Srrt protein_coding nonsense_mediated_decay MGP_AJ_T0001462.1 MGP_AJ_G0001383.1 mouse_genomes_project 5 11652960 11655231 + TEC TEC MGP_AJ_T0001790.1 MGP_AJ_G0001705.1 mouse_genomes_project 5 116889579 116891198 + TEC TEC MGP_AJ_T0015121.1 MGP_AJ_G0013216.1 mouse_genomes_project 5 108568794 108570241 - processed_pseudogene processed_pseudogene MGP_AJ_T0008435.1 MGP_AJ_G0006839.1 mouse_genomes_project 5 139486977 139487740 - Gm43703 lincRNA lincRNA MGP_AJ_T0075064.1 MGP_AJ_G0030160.1 mouse_genomes_project 5 134447225 134448870 + MGP_AJ_P0075064 Hspb1 protein_coding protein_coding MGP_AJ_T0075065.1 MGP_AJ_G0030160.1 mouse_genomes_project 5 134447324 134448868 + MGP_AJ_P0075065 Hspb1 protein_coding protein_coding MGP_AJ_T0015213.1 MGP_AJ_G0013308.1 mouse_genomes_project 5 147049565 147050040 - processed_pseudogene processed_pseudogene MGP_AJ_T0070329.1 MGP_AJ_G0029274.1 mouse_genomes_project 5 16143725 17644674 + MGP_AJ_P0070329 Magi2 protein_coding protein_coding MGP_AJ_T0070330.1 MGP_AJ_G0029274.1 mouse_genomes_project 5 16143735 16711212 + Magi2 protein_coding processed_transcript MGP_AJ_T0070331.1 MGP_AJ_G0029274.1 mouse_genomes_project 5 16143740 17644658 + MGP_AJ_P0070331 Magi2 protein_coding protein_coding MGP_AJ_T0070332.1 MGP_AJ_G0029274.1 mouse_genomes_project 5 16143744 17646528 + MGP_AJ_P0070332 Magi2 protein_coding protein_coding MGP_AJ_T0070333.1 MGP_AJ_G0029274.1 mouse_genomes_project 5 16144086 16147211 + Magi2 protein_coding retained_intron MGP_AJ_T0070334.1 MGP_AJ_G0029274.1 mouse_genomes_project 5 16845696 17123690 + MGP_AJ_P0070334 Magi2 protein_coding protein_coding MGP_AJ_T0070335.1 MGP_AJ_G0029274.1 mouse_genomes_project 5 16994635 17643881 + MGP_AJ_P0070335 Magi2 protein_coding protein_coding MGP_AJ_T0070336.1 MGP_AJ_G0029274.1 mouse_genomes_project 5 17134723 17402910 + Magi2 protein_coding processed_transcript MGP_AJ_T0070337.1 MGP_AJ_G0029274.1 mouse_genomes_project 5 17159404 17590939 + Magi2 protein_coding retained_intron MGP_AJ_T0070338.1 MGP_AJ_G0029274.1 mouse_genomes_project 5 17471049 17539531 + Magi2 protein_coding processed_transcript MGP_AJ_T0070339.1 MGP_AJ_G0029274.1 mouse_genomes_project 5 17541217 17644108 + MGP_AJ_P0070339 Magi2 protein_coding protein_coding MGP_AJ_T0070340.1 MGP_AJ_G0029274.1 mouse_genomes_project 5 17643423 17644558 + Magi2 protein_coding processed_transcript MGP_AJ_T0075180.1 MGP_AJ_G0030179.1 mouse_genomes_project 5 135537421 135548499 + MGP_AJ_P0075180 Cldn15 protein_coding protein_coding MGP_AJ_T0075181.1 MGP_AJ_G0030179.1 mouse_genomes_project 5 135538669 135548485 + MGP_AJ_P0075181 Cldn15 protein_coding protein_coding MGP_AJ_T0075182.1 MGP_AJ_G0030179.1 mouse_genomes_project 5 135546596 135547654 + Cldn15 protein_coding processed_transcript MGP_AJ_T0072490.1 MGP_AJ_G0029649.1 mouse_genomes_project 5 84623467 84635603 - MGP_AJ_P0072490 Ugt2a3 protein_coding protein_coding MGP_AJ_T0001661.1 MGP_AJ_G0001577.1 mouse_genomes_project 5 64174803 64177506 + TEC TEC MGP_AJ_T0072352.1 MGP_AJ_G0029618.1 mouse_genomes_project 5 74214750 74230954 + MGP_AJ_P0072352 Paics protein_coding protein_coding MGP_AJ_T0072353.1 MGP_AJ_G0029618.1 mouse_genomes_project 5 74214791 74230958 + MGP_AJ_P0072353 Paics protein_coding protein_coding MGP_AJ_T0072354.1 MGP_AJ_G0029618.1 mouse_genomes_project 5 74214811 74230762 + MGP_AJ_P0072354 Paics protein_coding protein_coding MGP_AJ_T0072355.1 MGP_AJ_G0029618.1 mouse_genomes_project 5 74214825 74222737 + MGP_AJ_P0072355 Paics protein_coding protein_coding MGP_AJ_T0072356.1 MGP_AJ_G0029618.1 mouse_genomes_project 5 74215220 74225866 + MGP_AJ_P0072356 Paics protein_coding nonsense_mediated_decay MGP_AJ_T0072357.1 MGP_AJ_G0029618.1 mouse_genomes_project 5 74224862 74226357 + Paics protein_coding retained_intron MGP_AJ_T0072358.1 MGP_AJ_G0029618.1 mouse_genomes_project 5 74229605 74230290 + Paics protein_coding retained_intron MGP_AJ_T0008350.1 MGP_AJ_G0006785.1 mouse_genomes_project 5 117905338 117913445 - Tbx3os2 lincRNA lincRNA MGP_AJ_T0071881.1 MGP_AJ_G0029541.1 mouse_genomes_project 5 62419623 62480227 + MGP_AJ_P0071881 Wdr19 protein_coding protein_coding MGP_AJ_T0071882.1 MGP_AJ_G0029541.1 mouse_genomes_project 5 62419625 62480236 + MGP_AJ_P0071882 Wdr19 protein_coding protein_coding MGP_AJ_T0071883.1 MGP_AJ_G0029541.1 mouse_genomes_project 5 62419627 62425242 + Wdr19 protein_coding retained_intron MGP_AJ_T0071884.1 MGP_AJ_G0029541.1 mouse_genomes_project 5 62419644 62464605 + Wdr19 protein_coding retained_intron MGP_AJ_T0071885.1 MGP_AJ_G0029541.1 mouse_genomes_project 5 62419658 62451129 + Wdr19 protein_coding retained_intron MGP_AJ_T0071886.1 MGP_AJ_G0029541.1 mouse_genomes_project 5 62419667 62444418 + Wdr19 protein_coding retained_intron MGP_AJ_T0071887.1 MGP_AJ_G0029541.1 mouse_genomes_project 5 62422542 62480231 + Wdr19 protein_coding retained_intron MGP_AJ_T0071888.1 MGP_AJ_G0029541.1 mouse_genomes_project 5 62476245 62480230 + MGP_AJ_P0071888 Wdr19 protein_coding protein_coding MGP_AJ_T0073565.1 MGP_AJ_G0029895.1 mouse_genomes_project 5 112195027 112219192 + Usp30 protein_coding processed_transcript MGP_AJ_T0073566.1 MGP_AJ_G0029895.1 mouse_genomes_project 5 112195080 112236110 + MGP_AJ_P0073566 Usp30 protein_coding protein_coding MGP_AJ_T0073567.1 MGP_AJ_G0029895.1 mouse_genomes_project 5 112195316 112216727 + Usp30 protein_coding processed_transcript MGP_AJ_T0073568.1 MGP_AJ_G0029895.1 mouse_genomes_project 5 112230573 112254971 + MGP_AJ_P0073568 Usp30 protein_coding protein_coding MGP_AJ_T0073569.1 MGP_AJ_G0029895.1 mouse_genomes_project 5 112230618 112251347 + MGP_AJ_P0073569 Usp30 protein_coding protein_coding MGP_AJ_T0073570.1 MGP_AJ_G0029895.1 mouse_genomes_project 5 112233970 112242579 + Usp30 protein_coding retained_intron MGP_AJ_T0073571.1 MGP_AJ_G0029895.1 mouse_genomes_project 5 112241388 112241908 + Usp30 protein_coding retained_intron MGP_AJ_T0099042.1 MGP_AJ_G0037019.1 mouse_genomes_project 5 41039958 41041233 + Gm16014 sense_intronic sense_intronic MGP_AJ_T0072224.1 MGP_AJ_G0029598.1 mouse_genomes_project 5 71253766 71324981 - MGP_AJ_P0072224 Usp46 protein_coding protein_coding MGP_AJ_T0072225.1 MGP_AJ_G0029598.1 mouse_genomes_project 5 71254037 71324992 - MGP_AJ_P0072225 Usp46 protein_coding protein_coding MGP_AJ_T0072226.1 MGP_AJ_G0029598.1 mouse_genomes_project 5 71257113 71292650 - Usp46 protein_coding processed_transcript MGP_AJ_T0072227.1 MGP_AJ_G0029598.1 mouse_genomes_project 5 71283359 71286436 - MGP_AJ_P0072227 Usp46 protein_coding protein_coding MGP_AJ_T0072228.1 MGP_AJ_G0029598.1 mouse_genomes_project 5 71286337 71289591 - Usp46 protein_coding retained_intron MGP_AJ_T0072229.1 MGP_AJ_G0029598.1 mouse_genomes_project 5 71286383 71322307 - MGP_AJ_P0072229 Usp46 protein_coding protein_coding MGP_AJ_T0075420.1 MGP_AJ_G0030228.1 mouse_genomes_project 5 136801847 136808270 + MGP_AJ_P0075420 Cnpy4 protein_coding protein_coding MGP_AJ_T0075421.1 MGP_AJ_G0030228.1 mouse_genomes_project 5 136804267 136806949 + MGP_AJ_P0075421 Cnpy4 protein_coding protein_coding MGP_AJ_T0075422.1 MGP_AJ_G0030228.1 mouse_genomes_project 5 136804462 136806502 + Cnpy4 protein_coding retained_intron MGP_AJ_T0073960.1 MGP_AJ_G0029970.1 mouse_genomes_project 5 118779360 118834369 - MGP_AJ_P0073960 Tpcn1 protein_coding protein_coding MGP_AJ_T0073961.1 MGP_AJ_G0029970.1 mouse_genomes_project 5 118792136 118834308 - Tpcn1 protein_coding retained_intron MGP_AJ_T0073962.1 MGP_AJ_G0029970.1 mouse_genomes_project 5 118828656 118834290 - Tpcn1 protein_coding retained_intron MGP_AJ_T0073963.1 MGP_AJ_G0029970.1 mouse_genomes_project 5 118832852 118834295 - Tpcn1 protein_coding retained_intron MGP_AJ_T0070392.1 MGP_AJ_G0029286.1 mouse_genomes_project 5 18601644 18643541 - MGP_AJ_P0070392 Napepld protein_coding protein_coding MGP_AJ_T0070393.1 MGP_AJ_G0029286.1 mouse_genomes_project 5 18601646 18643543 - MGP_AJ_P0070393 Napepld protein_coding protein_coding MGP_AJ_T0010663.1 MGP_AJ_G0008785.1 mouse_genomes_project 5 20213600 20213646 - Gm28022 miRNA miRNA MGP_AJ_T0073837.1 MGP_AJ_G0029944.1 mouse_genomes_project 5 114308546 114472319 - MGP_AJ_P0073837 Ccdc60 protein_coding protein_coding MGP_AJ_T0073838.1 MGP_AJ_G0029944.1 mouse_genomes_project 5 114350896 114472297 - MGP_AJ_P0073838 Ccdc60 protein_coding protein_coding MGP_AJ_T0074478.1 MGP_AJ_G0030056.1 mouse_genomes_project 5 122722097 122798630 - MGP_AJ_P0074478 Mphosph9 protein_coding unknown_likely_coding MGP_AJ_T0074479.1 MGP_AJ_G0030056.1 mouse_genomes_project 5 122722103 122798717 - MGP_AJ_P0074479 Mphosph9 protein_coding protein_coding MGP_AJ_T0074480.1 MGP_AJ_G0030056.1 mouse_genomes_project 5 122723814 122798594 - MGP_AJ_P0074480 Mphosph9 protein_coding nonsense_mediated_decay MGP_AJ_T0074481.1 MGP_AJ_G0030056.1 mouse_genomes_project 5 122724812 122798597 - MGP_AJ_P0074481 Mphosph9 protein_coding protein_coding MGP_AJ_T0074482.1 MGP_AJ_G0030056.1 mouse_genomes_project 5 122725762 122732248 - Mphosph9 protein_coding processed_transcript MGP_AJ_T0074483.1 MGP_AJ_G0030056.1 mouse_genomes_project 5 122730137 122736470 - Mphosph9 protein_coding processed_transcript MGP_AJ_T0074484.1 MGP_AJ_G0030056.1 mouse_genomes_project 5 122732084 122734163 - Mphosph9 protein_coding processed_transcript MGP_AJ_T0074485.1 MGP_AJ_G0030056.1 mouse_genomes_project 5 122733095 122734534 - Mphosph9 protein_coding retained_intron MGP_AJ_T0074486.1 MGP_AJ_G0030056.1 mouse_genomes_project 5 122760385 122798615 - MGP_AJ_P0074486 Mphosph9 protein_coding nonsense_mediated_decay MGP_AJ_T0074487.1 MGP_AJ_G0030056.1 mouse_genomes_project 5 122767738 122795873 - MGP_AJ_P0074487 Mphosph9 protein_coding nonsense_mediated_decay MGP_AJ_T0074488.1 MGP_AJ_G0030056.1 mouse_genomes_project 5 122783937 122798717 - Mphosph9 protein_coding processed_transcript MGP_AJ_T0074489.1 MGP_AJ_G0030056.1 mouse_genomes_project 5 122783937 122798597 - Mphosph9 protein_coding processed_transcript MGP_AJ_T0015141.1 MGP_AJ_G0013236.1 mouse_genomes_project 5 115531739 115532176 - processed_pseudogene processed_pseudogene MGP_AJ_T0001889.1 MGP_AJ_G0001802.1 mouse_genomes_project 5 139018360 139020692 - TEC TEC MGP_AJ_T0075194.1 MGP_AJ_G0030182.1 mouse_genomes_project 5 135599491 135606450 + MGP_AJ_P0075194 Vgf protein_coding protein_coding MGP_AJ_T0075195.1 MGP_AJ_G0030182.1 mouse_genomes_project 5 135603393 135606450 + MGP_AJ_P0075195 Vgf protein_coding protein_coding MGP_AJ_T0075196.1 MGP_AJ_G0030182.1 mouse_genomes_project 5 135603462 135606127 + MGP_AJ_P0075196 Vgf protein_coding protein_coding MGP_AJ_T0075197.1 MGP_AJ_G0030182.1 mouse_genomes_project 5 135603799 135604506 + MGP_AJ_P0075197 Vgf protein_coding protein_coding MGP_AJ_T0008433.1 MGP_AJ_G0006837.1 mouse_genomes_project 5 138761199 138768400 + Gm42423 lincRNA lincRNA MGP_AJ_T0008332.1 MGP_AJ_G0006769.1 mouse_genomes_project 5 114489038 114492717 - Gm13838 lincRNA lincRNA MGP_AJ_T0001556.1 MGP_AJ_G0001474.1 mouse_genomes_project 5 45389874 45392451 + TEC TEC MGP_AJ_T0001809.1 MGP_AJ_G0001724.1 mouse_genomes_project 5 120905794 120910483 + TEC TEC MGP_AJ_T0073666.1 MGP_AJ_G0029913.1 mouse_genomes_project 5 112969811 112971327 - MGP_AJ_P0073666 2610524H06Rik protein_coding protein_coding MGP_AJ_T0001578.1 MGP_AJ_G0001495.1 mouse_genomes_project 5 46287678 46291833 - TEC TEC MGP_AJ_T0075282.1 MGP_AJ_G0030200.1 mouse_genomes_project 5 136131024 136148642 + MGP_AJ_P0075282 Tfr2 protein_coding protein_coding MGP_AJ_T0075283.1 MGP_AJ_G0030200.1 mouse_genomes_project 5 136131035 136148644 + MGP_AJ_P0075283 Tfr2 protein_coding protein_coding MGP_AJ_T0075284.1 MGP_AJ_G0030200.1 mouse_genomes_project 5 136131048 136132547 + Tfr2 protein_coding retained_intron MGP_AJ_T0075285.1 MGP_AJ_G0030200.1 mouse_genomes_project 5 136131053 136148642 + MGP_AJ_P0075285 Tfr2 protein_coding protein_coding MGP_AJ_T0075286.1 MGP_AJ_G0030200.1 mouse_genomes_project 5 136131904 136148628 + MGP_AJ_P0075286 Tfr2 protein_coding protein_coding MGP_AJ_T0075287.1 MGP_AJ_G0030200.1 mouse_genomes_project 5 136131989 136148639 + MGP_AJ_P0075287 Tfr2 protein_coding protein_coding MGP_AJ_T0075288.1 MGP_AJ_G0030200.1 mouse_genomes_project 5 136132635 136135614 + Tfr2 protein_coding retained_intron MGP_AJ_T0075289.1 MGP_AJ_G0030200.1 mouse_genomes_project 5 136135706 136138934 + Tfr2 protein_coding retained_intron MGP_AJ_T0075290.1 MGP_AJ_G0030200.1 mouse_genomes_project 5 136140038 136141978 + MGP_AJ_P0075290 Tfr2 protein_coding protein_coding MGP_AJ_T0075291.1 MGP_AJ_G0030200.1 mouse_genomes_project 5 136144394 136148152 + Tfr2 protein_coding retained_intron MGP_AJ_T0075292.1 MGP_AJ_G0030200.1 mouse_genomes_project 5 136144394 136145219 + Tfr2 protein_coding retained_intron MGP_AJ_T0075375.1 MGP_AJ_G0030220.1 mouse_genomes_project 5 136668677 136670371 + MGP_AJ_P0075375 protein_coding protein_coding MGP_AJ_T0001897.1 MGP_AJ_G0001810.1 mouse_genomes_project 5 142474948 142476037 + TEC TEC MGP_AJ_T0001543.1 MGP_AJ_G0001461.1 mouse_genomes_project 5 41912598 41914817 - TEC TEC MGP_AJ_T0008142.1 MGP_AJ_G0006634.1 mouse_genomes_project 5 49525271 49525546 - Gm43179 lincRNA lincRNA MGP_AJ_T0099030.1 MGP_AJ_G0037007.1 mouse_genomes_project 5 239919 240671 + Gm43017 sense_intronic sense_intronic MGP_AJ_T0004757.1 MGP_AJ_G0004107.1 mouse_genomes_project 5 101201188 101221443 - Gm42620 antisense antisense MGP_AJ_T0004657.1 MGP_AJ_G0004030.1 mouse_genomes_project 5 27837642 27842278 - Gm15461 antisense antisense MGP_AJ_T0101317.1 MGP_AJ_G0039283.1 mouse_genomes_project 5 145994853 145994924 + Gm25091 snoRNA snoRNA MGP_AJ_T0001616.1 MGP_AJ_G0001533.1 mouse_genomes_project 5 55169810 55170865 + TEC TEC MGP_AJ_T0001814.1 MGP_AJ_G0001729.1 mouse_genomes_project 5 121544495 121546060 + TEC TEC MGP_AJ_T0071775.1 MGP_AJ_G0029520.1 mouse_genomes_project 5 50296993 50405866 - MGP_AJ_P0071775 Sel1l3 protein_coding protein_coding MGP_AJ_T0071776.1 MGP_AJ_G0029520.1 mouse_genomes_project 5 50336966 50405729 - Sel1l3 protein_coding retained_intron MGP_AJ_T0071777.1 MGP_AJ_G0029520.1 mouse_genomes_project 5 50345159 50348530 - Sel1l3 protein_coding retained_intron MGP_AJ_T0071778.1 MGP_AJ_G0029520.1 mouse_genomes_project 5 50347444 50364949 - Sel1l3 protein_coding processed_transcript MGP_AJ_T0071779.1 MGP_AJ_G0029520.1 mouse_genomes_project 5 50390643 50406510 - Sel1l3 protein_coding retained_intron MGP_AJ_T0072147.1 MGP_AJ_G0029584.1 mouse_genomes_project 5 69931495 69988922 - MGP_AJ_P0072147 Txk protein_coding protein_coding MGP_AJ_T0072148.1 MGP_AJ_G0029584.1 mouse_genomes_project 5 69931495 69973076 - MGP_AJ_P0072148 Txk protein_coding protein_coding MGP_AJ_T0072149.1 MGP_AJ_G0029584.1 mouse_genomes_project 5 69931495 69988926 - MGP_AJ_P0072149 Txk protein_coding protein_coding MGP_AJ_T0072150.1 MGP_AJ_G0029584.1 mouse_genomes_project 5 69931497 69988922 - MGP_AJ_P0072150 Txk protein_coding protein_coding MGP_AJ_T0072151.1 MGP_AJ_G0029584.1 mouse_genomes_project 5 69931503 69972380 - Txk protein_coding processed_transcript MGP_AJ_T0072152.1 MGP_AJ_G0029584.1 mouse_genomes_project 5 69931503 69972380 - Txk protein_coding processed_transcript MGP_AJ_T0072153.1 MGP_AJ_G0029584.1 mouse_genomes_project 5 69939165 69988923 - Txk protein_coding retained_intron MGP_AJ_T0072154.1 MGP_AJ_G0029584.1 mouse_genomes_project 5 69984709 69988919 - Txk protein_coding retained_intron MGP_AJ_T0001707.1 MGP_AJ_G0001622.1 mouse_genomes_project 5 78807826 78808773 + TEC TEC MGP_AJ_T0001819.1 MGP_AJ_G0001734.1 mouse_genomes_project 5 122140815 122141347 + TEC TEC MGP_AJ_T0100034.1 MGP_AJ_G0038000.1 mouse_genomes_project 5 93526169 93526276 + Gm25937 snRNA snRNA MGP_AJ_T0001553.1 MGP_AJ_G0001471.1 mouse_genomes_project 5 43978695 43980549 + TEC TEC MGP_AJ_T0010726.1 MGP_AJ_G0008848.1 mouse_genomes_project 5 136090511 136090626 - Mir6418 miRNA miRNA MGP_AJ_T0004809.1 MGP_AJ_G0004143.1 mouse_genomes_project 5 118724032 118725094 - Gm15690 antisense antisense MGP_AJ_T0075581.1 MGP_AJ_G0030261.1 mouse_genomes_project 5 138674125 138692992 - MGP_AJ_P0075581 Gm26938 protein_coding protein_coding MGP_AJ_T0001489.1 MGP_AJ_G0001409.1 mouse_genomes_project 5 27919274 27921488 + TEC TEC MGP_AJ_T0072054.1 MGP_AJ_G0029564.1 mouse_genomes_project 5 64867947 64874120 + MGP_AJ_P0072054 Shisa3 protein_coding protein_coding MGP_AJ_T0072055.1 MGP_AJ_G0029564.1 mouse_genomes_project 5 64868034 64885403 + MGP_AJ_P0072055 Shisa3 protein_coding nonsense_mediated_decay MGP_AJ_T0004798.1 MGP_AJ_G0004138.1 mouse_genomes_project 5 116125549 116129344 - Gm26995 antisense antisense MGP_AJ_T0015177.1 MGP_AJ_G0013272.1 mouse_genomes_project 5 137453113 137453665 + processed_pseudogene processed_pseudogene MGP_AJ_T0075337.1 MGP_AJ_G0030209.1 mouse_genomes_project 5 136302822 136312952 - MGP_AJ_P0075337 Nyap1 protein_coding protein_coding MGP_AJ_T0075338.1 MGP_AJ_G0030209.1 mouse_genomes_project 5 136303798 136312672 - MGP_AJ_P0075338 Nyap1 protein_coding unknown_likely_coding MGP_AJ_T0075339.1 MGP_AJ_G0030209.1 mouse_genomes_project 5 136303836 136314561 - MGP_AJ_P0075339 Nyap1 protein_coding protein_coding MGP_AJ_T0075340.1 MGP_AJ_G0030209.1 mouse_genomes_project 5 136305840 136314056 - MGP_AJ_P0075340 Nyap1 protein_coding protein_coding MGP_AJ_T0075274.1 MGP_AJ_G0030199.1 mouse_genomes_project 5 136114445 136124389 + MGP_AJ_P0075274 Actl6b protein_coding protein_coding MGP_AJ_T0075275.1 MGP_AJ_G0030199.1 mouse_genomes_project 5 136114466 136115275 + Actl6b protein_coding retained_intron MGP_AJ_T0075276.1 MGP_AJ_G0030199.1 mouse_genomes_project 5 136114466 136127829 + MGP_AJ_P0075276 Actl6b protein_coding nonsense_mediated_decay MGP_AJ_T0075277.1 MGP_AJ_G0030199.1 mouse_genomes_project 5 136114467 136126963 + MGP_AJ_P0075277 Actl6b protein_coding protein_coding MGP_AJ_T0075278.1 MGP_AJ_G0030199.1 mouse_genomes_project 5 136114483 136115961 + MGP_AJ_P0075278 Actl6b protein_coding protein_coding MGP_AJ_T0075279.1 MGP_AJ_G0030199.1 mouse_genomes_project 5 136114485 136117584 + Actl6b protein_coding retained_intron MGP_AJ_T0075280.1 MGP_AJ_G0030199.1 mouse_genomes_project 5 136114485 136130742 + MGP_AJ_P0075280 Actl6b protein_coding nonsense_mediated_decay MGP_AJ_T0075281.1 MGP_AJ_G0030199.1 mouse_genomes_project 5 136114563 136130571 + MGP_AJ_P0075281 Actl6b protein_coding protein_coding MGP_AJ_T0073029.1 MGP_AJ_G0029780.1 mouse_genomes_project 5 102204652 102218913 + MGP_AJ_P0073029 BC005561 protein_coding protein_coding MGP_AJ_T0001657.1 MGP_AJ_G0001573.1 mouse_genomes_project 5 63777717 63780202 - TEC TEC MGP_AJ_T0001601.1 MGP_AJ_G0001518.1 mouse_genomes_project 5 52000213 52002915 + TEC TEC MGP_AJ_T0073909.1 MGP_AJ_G0029959.1 mouse_genomes_project 5 116386304 116440726 - MGP_AJ_P0073909 Rnft2 protein_coding protein_coding MGP_AJ_T0073910.1 MGP_AJ_G0029959.1 mouse_genomes_project 5 116386310 116440981 - MGP_AJ_P0073910 Rnft2 protein_coding protein_coding MGP_AJ_T0073911.1 MGP_AJ_G0029959.1 mouse_genomes_project 5 116389199 116424514 - Rnft2 protein_coding retained_intron MGP_AJ_T0073912.1 MGP_AJ_G0029959.1 mouse_genomes_project 5 116389681 116396759 - MGP_AJ_P0073912 Rnft2 protein_coding protein_coding MGP_AJ_T0073913.1 MGP_AJ_G0029959.1 mouse_genomes_project 5 116429520 116440859 - MGP_AJ_P0073913 Rnft2 protein_coding protein_coding MGP_AJ_T0073914.1 MGP_AJ_G0029959.1 mouse_genomes_project 5 116432291 116438778 - Rnft2 protein_coding retained_intron MGP_AJ_T0073915.1 MGP_AJ_G0029959.1 mouse_genomes_project 5 116432869 116440857 - MGP_AJ_P0073915 Rnft2 protein_coding protein_coding MGP_AJ_T0075995.1 MGP_AJ_G0030358.1 mouse_genomes_project 5 146356405 146359159 + MGP_AJ_P0075995 Gsx1 protein_coding protein_coding MGP_AJ_T0001884.1 MGP_AJ_G0001797.1 mouse_genomes_project 5 135097624 135104565 - TEC TEC MGP_AJ_T0072263.1 MGP_AJ_G0029603.1 mouse_genomes_project 5 72253235 72300584 - MGP_AJ_P0072263 Chic2 protein_coding protein_coding MGP_AJ_T0072264.1 MGP_AJ_G0029603.1 mouse_genomes_project 5 72266432 72300122 - Chic2 protein_coding retained_intron MGP_AJ_T0075942.1 MGP_AJ_G0030343.1 mouse_genomes_project 5 145275350 145290678 - MGP_AJ_P0075942 Gm3415 protein_coding protein_coding MGP_AJ_T0099043.1 MGP_AJ_G0037020.1 mouse_genomes_project 5 41878069 41883721 - Gm3364 sense_intronic sense_intronic MGP_AJ_T0073780.1 MGP_AJ_G0029937.1 mouse_genomes_project 5 113735841 113742037 + MGP_AJ_P0073780 Rplp0 protein_coding unknown_likely_coding MGP_AJ_T0073781.1 MGP_AJ_G0029937.1 mouse_genomes_project 5 113735865 113739360 + MGP_AJ_P0073781 Rplp0 protein_coding protein_coding MGP_AJ_T0073782.1 MGP_AJ_G0029937.1 mouse_genomes_project 5 113735906 113738015 + MGP_AJ_P0073782 Rplp0 protein_coding protein_coding MGP_AJ_T0073783.1 MGP_AJ_G0029937.1 mouse_genomes_project 5 113735951 113737872 + Rplp0 protein_coding retained_intron MGP_AJ_T0004838.1 MGP_AJ_G0004165.1 mouse_genomes_project 5 125706355 125726468 - Tmem132cos antisense antisense MGP_AJ_T0004839.1 MGP_AJ_G0004165.1 mouse_genomes_project 5 125706371 125726428 - Tmem132cos antisense antisense MGP_AJ_T0004840.1 MGP_AJ_G0004165.1 mouse_genomes_project 5 125706433 125726431 - Tmem132cos antisense antisense MGP_AJ_T0001557.1 MGP_AJ_G0001475.1 mouse_genomes_project 5 45458370 45460128 + TEC TEC MGP_AJ_T0070865.1 MGP_AJ_G0029374.1 mouse_genomes_project 5 28113131 28120440 - MGP_AJ_P0070865 Slc30a3 protein_coding protein_coding MGP_AJ_T0070866.1 MGP_AJ_G0029374.1 mouse_genomes_project 5 28114416 28115440 - MGP_AJ_P0070866 Slc30a3 protein_coding protein_coding MGP_AJ_T0070867.1 MGP_AJ_G0029374.1 mouse_genomes_project 5 28115865 28120552 - MGP_AJ_P0070867 Slc30a3 protein_coding nonsense_mediated_decay MGP_AJ_T0070868.1 MGP_AJ_G0029374.1 mouse_genomes_project 5 28116423 28121846 - MGP_AJ_P0070868 Slc30a3 protein_coding protein_coding MGP_AJ_T0070869.1 MGP_AJ_G0029374.1 mouse_genomes_project 5 28116459 28135621 - MGP_AJ_P0070869 Slc30a3 protein_coding protein_coding MGP_AJ_T0070497.1 MGP_AJ_G0029305.1 mouse_genomes_project 5 21355931 21363893 - MGP_AJ_P0070497 Atg9b protein_coding protein_coding MGP_AJ_T0070498.1 MGP_AJ_G0029305.1 mouse_genomes_project 5 21356370 21362385 - Atg9b protein_coding processed_transcript MGP_AJ_T0070499.1 MGP_AJ_G0029305.1 mouse_genomes_project 5 21358855 21359717 - Atg9b protein_coding processed_transcript MGP_AJ_T0015014.1 MGP_AJ_G0013109.1 mouse_genomes_project 5 65531918 65532243 + processed_pseudogene processed_pseudogene MGP_AJ_T0008452.1 MGP_AJ_G0006853.1 mouse_genomes_project 5 146590277 146593851 + D5Ertd605e lincRNA lincRNA MGP_AJ_T0072138.1 MGP_AJ_G0029582.1 mouse_genomes_project 5 69836361 69876106 - MGP_AJ_P0072138 Cnga1 protein_coding protein_coding MGP_AJ_T0072139.1 MGP_AJ_G0029582.1 mouse_genomes_project 5 69836361 69851843 - MGP_AJ_P0072139 Cnga1 protein_coding protein_coding MGP_AJ_T0072140.1 MGP_AJ_G0029582.1 mouse_genomes_project 5 69836780 69870282 - MGP_AJ_P0072140 Cnga1 protein_coding protein_coding MGP_AJ_T0072141.1 MGP_AJ_G0029582.1 mouse_genomes_project 5 69847822 69870287 - MGP_AJ_P0072141 Cnga1 protein_coding protein_coding MGP_AJ_T0072142.1 MGP_AJ_G0029582.1 mouse_genomes_project 5 69851717 69863518 - MGP_AJ_P0072142 Cnga1 protein_coding protein_coding MGP_AJ_T0072143.1 MGP_AJ_G0029582.1 mouse_genomes_project 5 69875640 69877632 - Cnga1 protein_coding retained_intron MGP_AJ_T0070745.1 MGP_AJ_G0029355.1 mouse_genomes_project 5 27375037 27473154 - MGP_AJ_P0070745 Otof protein_coding protein_coding MGP_AJ_T0070746.1 MGP_AJ_G0029355.1 mouse_genomes_project 5 27375037 27473124 - MGP_AJ_P0070746 Otof protein_coding protein_coding MGP_AJ_T0070747.1 MGP_AJ_G0029355.1 mouse_genomes_project 5 27375043 27473154 - Otof protein_coding retained_intron MGP_AJ_T0070748.1 MGP_AJ_G0029355.1 mouse_genomes_project 5 27375270 27473081 - Otof protein_coding retained_intron MGP_AJ_T0070749.1 MGP_AJ_G0029355.1 mouse_genomes_project 5 27414211 27417362 - Otof protein_coding retained_intron MGP_AJ_T0102021.1 MGP_AJ_G0039827.1 mouse_genomes_project 5 29814813 29877195 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_AJ_T0001468.1 MGP_AJ_G0001389.1 mouse_genomes_project 5 16115319 16118443 - TEC TEC MGP_AJ_T0001510.1 MGP_AJ_G0001428.1 mouse_genomes_project 5 32572329 32573569 - TEC TEC MGP_AJ_T0014877.1 MGP_AJ_G0012972.1 mouse_genomes_project 5 17194425 17194765 - processed_pseudogene processed_pseudogene MGP_AJ_T0070605.1 MGP_AJ_G0029324.1 mouse_genomes_project 5 22164141 22204370 + MGP_AJ_P0070605 Galntl5 protein_coding protein_coding MGP_AJ_T0070606.1 MGP_AJ_G0029324.1 mouse_genomes_project 5 22164183 22204368 + MGP_AJ_P0070606 Galntl5 protein_coding protein_coding MGP_AJ_T0008245.1 MGP_AJ_G0006716.1 mouse_genomes_project 5 99417799 99420064 + Gm43270 lincRNA lincRNA MGP_AJ_T0073807.1 MGP_AJ_G0029941.1 mouse_genomes_project 5 114024878 114106846 + Cit protein_coding retained_intron MGP_AJ_T0073808.1 MGP_AJ_G0029941.1 mouse_genomes_project 5 114024880 114054123 + MGP_AJ_P0073808 Cit protein_coding protein_coding MGP_AJ_T0073809.1 MGP_AJ_G0029941.1 mouse_genomes_project 5 114024881 114054141 + MGP_AJ_P0073809 Cit protein_coding protein_coding MGP_AJ_T0073810.1 MGP_AJ_G0029941.1 mouse_genomes_project 5 114025244 114106853 + Cit protein_coding retained_intron MGP_AJ_T0073811.1 MGP_AJ_G0029941.1 mouse_genomes_project 5 114025244 114188209 + MGP_AJ_P0073811 Cit protein_coding protein_coding MGP_AJ_T0073812.1 MGP_AJ_G0029941.1 mouse_genomes_project 5 114025244 114190761 + MGP_AJ_P0073812 Cit protein_coding protein_coding MGP_AJ_T0073813.1 MGP_AJ_G0029941.1 mouse_genomes_project 5 114025971 114188184 + MGP_AJ_P0073813 Cit protein_coding protein_coding MGP_AJ_T0073814.1 MGP_AJ_G0029941.1 mouse_genomes_project 5 114025971 114188184 + MGP_AJ_P0073814 Cit protein_coding protein_coding MGP_AJ_T0073815.1 MGP_AJ_G0029941.1 mouse_genomes_project 5 114026061 114035016 + Cit protein_coding processed_transcript MGP_AJ_T0073816.1 MGP_AJ_G0029941.1 mouse_genomes_project 5 114030597 114043331 + Cit protein_coding retained_intron MGP_AJ_T0073817.1 MGP_AJ_G0029941.1 mouse_genomes_project 5 114067382 114068583 + Cit protein_coding retained_intron MGP_AJ_T0073818.1 MGP_AJ_G0029941.1 mouse_genomes_project 5 114089052 114106744 + Cit protein_coding retained_intron MGP_AJ_T0073819.1 MGP_AJ_G0029941.1 mouse_genomes_project 5 114089081 114190756 + MGP_AJ_P0073819 Cit protein_coding unknown_likely_coding MGP_AJ_T0073820.1 MGP_AJ_G0029941.1 mouse_genomes_project 5 114106784 114188652 + Cit protein_coding processed_transcript MGP_AJ_T0073821.1 MGP_AJ_G0029941.1 mouse_genomes_project 5 114107231 114188224 + Cit protein_coding processed_transcript MGP_AJ_T0073822.1 MGP_AJ_G0029941.1 mouse_genomes_project 5 114114771 114128179 + Cit protein_coding processed_transcript MGP_AJ_T0073823.1 MGP_AJ_G0029941.1 mouse_genomes_project 5 114126526 114180013 + Cit protein_coding retained_intron MGP_AJ_T0073824.1 MGP_AJ_G0029941.1 mouse_genomes_project 5 114132335 114133895 + Cit protein_coding processed_transcript MGP_AJ_T0073825.1 MGP_AJ_G0029941.1 mouse_genomes_project 5 114149688 114188221 + MGP_AJ_P0073825 Cit protein_coding nonsense_mediated_decay MGP_AJ_T0073826.1 MGP_AJ_G0029941.1 mouse_genomes_project 5 114168945 114172558 + Cit protein_coding retained_intron MGP_AJ_T0001718.1 MGP_AJ_G0001633.1 mouse_genomes_project 5 90554287 90554880 - TEC TEC MGP_AJ_T0073672.1 MGP_AJ_G0029916.1 mouse_genomes_project 5 113048927 113064106 + MGP_AJ_P0073672 Oasl2 protein_coding protein_coding MGP_AJ_T0073673.1 MGP_AJ_G0029916.1 mouse_genomes_project 5 113048992 113051838 + MGP_AJ_P0073673 Oasl2 protein_coding protein_coding MGP_AJ_T0073674.1 MGP_AJ_G0029916.1 mouse_genomes_project 5 113049021 113051963 + MGP_AJ_P0073674 Oasl2 protein_coding protein_coding MGP_AJ_T0073675.1 MGP_AJ_G0029916.1 mouse_genomes_project 5 113049523 113050342 + Oasl2 protein_coding retained_intron MGP_AJ_T0073676.1 MGP_AJ_G0029916.1 mouse_genomes_project 5 113049567 113052275 + Oasl2 protein_coding retained_intron MGP_AJ_T0073677.1 MGP_AJ_G0029916.1 mouse_genomes_project 5 113049733 113064098 + MGP_AJ_P0073677 Oasl2 protein_coding nonsense_mediated_decay MGP_AJ_T0073678.1 MGP_AJ_G0029916.1 mouse_genomes_project 5 113053360 113063092 + MGP_AJ_P0073678 Oasl2 protein_coding protein_coding MGP_AJ_T0073679.1 MGP_AJ_G0029916.1 mouse_genomes_project 5 113053841 113055953 + Oasl2 protein_coding retained_intron MGP_AJ_T0073680.1 MGP_AJ_G0029916.1 mouse_genomes_project 5 113056441 113058751 + Oasl2 protein_coding retained_intron MGP_AJ_T0008342.1 MGP_AJ_G0006777.1 mouse_genomes_project 5 117081198 117083867 - Gm43782 lincRNA lincRNA MGP_AJ_T0008144.1 MGP_AJ_G0006636.1 mouse_genomes_project 5 50170065 50184868 + Gm42746 lincRNA lincRNA MGP_AJ_T0099048.1 MGP_AJ_G0037025.1 mouse_genomes_project 5 98517671 98518097 - Gm43514 sense_intronic sense_intronic MGP_AJ_T0075823.1 MGP_AJ_G0030314.1 mouse_genomes_project 5 143006488 143097500 + MGP_AJ_P0075823 Lmtk2 protein_coding protein_coding MGP_AJ_T0008087.1 MGP_AJ_G0006596.1 mouse_genomes_project 5 27030206 27042975 - Gm42806 lincRNA lincRNA MGP_AJ_T0008088.1 MGP_AJ_G0006596.1 mouse_genomes_project 5 27038621 27041952 - Gm42806 lincRNA lincRNA MGP_AJ_T0070572.1 MGP_AJ_G0029318.1 mouse_genomes_project 5 21565479 21576706 - Smarcd3 protein_coding retained_intron MGP_AJ_T0070573.1 MGP_AJ_G0029318.1 mouse_genomes_project 5 21567284 21598879 - MGP_AJ_P0070573 Smarcd3 protein_coding protein_coding MGP_AJ_T0070574.1 MGP_AJ_G0029318.1 mouse_genomes_project 5 21567284 21576742 - MGP_AJ_P0070574 Smarcd3 protein_coding protein_coding MGP_AJ_T0070576.1 MGP_AJ_G0029318.1 mouse_genomes_project 5 21569357 21571512 - Smarcd3 protein_coding retained_intron MGP_AJ_T0070577.1 MGP_AJ_G0029318.1 mouse_genomes_project 5 21569826 21576665 - Smarcd3 protein_coding retained_intron MGP_AJ_T0070578.1 MGP_AJ_G0029318.1 mouse_genomes_project 5 21570397 21573605 - Smarcd3 protein_coding retained_intron MGP_AJ_T0070579.1 MGP_AJ_G0029318.1 mouse_genomes_project 5 21570408 21571652 - Smarcd3 protein_coding retained_intron MGP_AJ_T0070580.1 MGP_AJ_G0029318.1 mouse_genomes_project 5 21570529 21576630 - Smarcd3 protein_coding retained_intron MGP_AJ_T0070581.1 MGP_AJ_G0029318.1 mouse_genomes_project 5 21597014 21597625 - Smarcd3 protein_coding processed_transcript MGP_AJ_T0015033.1 MGP_AJ_G0013128.1 mouse_genomes_project 5 73721503 73722577 - processed_pseudogene processed_pseudogene MGP_AJ_T0001630.1 MGP_AJ_G0001546.1 mouse_genomes_project 5 62526017 62527204 - TEC TEC MGP_AJ_T0014987.1 MGP_AJ_G0013082.1 mouse_genomes_project 5 54652983 54653614 + processed_pseudogene processed_pseudogene MGP_AJ_T0004644.1 MGP_AJ_G0004020.1 mouse_genomes_project 5 19283834 19285511 + Gm16110 antisense antisense MGP_AJ_T0014902.1 MGP_AJ_G0012997.1 mouse_genomes_project 5 20362652 20363277 - processed_pseudogene processed_pseudogene MGP_AJ_T0076126.1 MGP_AJ_G0030381.1 mouse_genomes_project 5 149343331 149572509 + MGP_AJ_P0076126 Fry protein_coding protein_coding MGP_AJ_T0076127.1 MGP_AJ_G0030381.1 mouse_genomes_project 5 149343353 149581046 + Fry protein_coding retained_intron MGP_AJ_T0076128.1 MGP_AJ_G0030381.1 mouse_genomes_project 5 149343353 149577968 + MGP_AJ_P0076128 Fry protein_coding protein_coding MGP_AJ_T0076129.1 MGP_AJ_G0030381.1 mouse_genomes_project 5 149421948 149572484 + MGP_AJ_P0076129 Fry protein_coding protein_coding MGP_AJ_T0076130.1 MGP_AJ_G0030381.1 mouse_genomes_project 5 149487392 149490722 + Fry protein_coding retained_intron MGP_AJ_T0076131.1 MGP_AJ_G0030381.1 mouse_genomes_project 5 149490583 149730981 + MGP_AJ_P0076131 Fry protein_coding protein_coding MGP_AJ_T0076132.1 MGP_AJ_G0030381.1 mouse_genomes_project 5 149526606 149623121 + Fry protein_coding retained_intron MGP_AJ_T0076133.1 MGP_AJ_G0030381.1 mouse_genomes_project 5 149632721 149635392 + Fry protein_coding retained_intron MGP_AJ_T0076134.1 MGP_AJ_G0030381.1 mouse_genomes_project 5 149642953 149647177 + Fry protein_coding retained_intron MGP_AJ_T0076135.1 MGP_AJ_G0030381.1 mouse_genomes_project 5 149663470 149665611 + Fry protein_coding retained_intron MGP_AJ_T0076136.1 MGP_AJ_G0030381.1 mouse_genomes_project 5 149671845 149730981 + MGP_AJ_P0076136 Fry protein_coding protein_coding MGP_AJ_T0076137.1 MGP_AJ_G0030381.1 mouse_genomes_project 5 149685840 149730981 + MGP_AJ_P0076137 Fry protein_coding protein_coding MGP_AJ_T0076138.1 MGP_AJ_G0030381.1 mouse_genomes_project 5 149692458 149730029 + Fry protein_coding retained_intron MGP_AJ_T0076139.1 MGP_AJ_G0030381.1 mouse_genomes_project 5 149695393 149699077 + Fry protein_coding retained_intron MGP_AJ_T0076140.1 MGP_AJ_G0030381.1 mouse_genomes_project 5 149720447 149723065 + Fry protein_coding retained_intron MGP_AJ_T0076141.1 MGP_AJ_G0030381.1 mouse_genomes_project 5 149723376 149725254 + Fry protein_coding retained_intron MGP_AJ_T0076142.1 MGP_AJ_G0030381.1 mouse_genomes_project 5 149729102 149730863 + Fry protein_coding retained_intron MGP_AJ_T0074196.1 MGP_AJ_G0030015.1 mouse_genomes_project 5 120786760 120798161 + MGP_AJ_P0074196 Gpn3 protein_coding nonsense_mediated_decay MGP_AJ_T0074197.1 MGP_AJ_G0030015.1 mouse_genomes_project 5 120787335 120798222 + MGP_AJ_P0074197 Gpn3 protein_coding protein_coding MGP_AJ_T0074198.1 MGP_AJ_G0030015.1 mouse_genomes_project 5 120787411 120794047 + Gpn3 protein_coding retained_intron MGP_AJ_T0074199.1 MGP_AJ_G0030015.1 mouse_genomes_project 5 120788868 120797619 + MGP_AJ_P0074199 Gpn3 protein_coding nonsense_mediated_decay MGP_AJ_T0074200.1 MGP_AJ_G0030015.1 mouse_genomes_project 5 120796587 120798222 + MGP_AJ_P0074200 Gpn3 protein_coding nonsense_mediated_decay MGP_AJ_T0074201.1 MGP_AJ_G0030015.1 mouse_genomes_project 5 120796612 120797852 + MGP_AJ_P0074201 Gpn3 protein_coding protein_coding MGP_AJ_T0004664.1 MGP_AJ_G0004036.1 mouse_genomes_project 5 29807523 29808832 - antisense antisense MGP_AJ_T0015109.1 MGP_AJ_G0013204.1 mouse_genomes_project 5 106063682 106064158 - processed_pseudogene processed_pseudogene MGP_AJ_T0070436.1 MGP_AJ_G0029294.1 mouse_genomes_project 5 19864144 19864906 - MGP_AJ_P0070436 protein_coding protein_coding MGP_AJ_T0072561.1 MGP_AJ_G0029672.1 mouse_genomes_project 5 85917852 85929916 + MGP_AJ_P0072561 Ambn protein_coding protein_coding MGP_AJ_T0072562.1 MGP_AJ_G0029672.1 mouse_genomes_project 5 85917872 85930265 + MGP_AJ_P0072562 Ambn protein_coding protein_coding MGP_AJ_T0071273.1 MGP_AJ_G0029435.1 mouse_genomes_project 5 31795168 31798720 - MGP_AJ_P0071273 Mfsd10 protein_coding protein_coding MGP_AJ_T0071274.1 MGP_AJ_G0029435.1 mouse_genomes_project 5 31795172 31798743 - MGP_AJ_P0071274 Mfsd10 protein_coding protein_coding MGP_AJ_T0071275.1 MGP_AJ_G0029435.1 mouse_genomes_project 5 31795173 31796254 - Mfsd10 protein_coding retained_intron MGP_AJ_T0071276.1 MGP_AJ_G0029435.1 mouse_genomes_project 5 31795174 31796156 - Mfsd10 protein_coding retained_intron MGP_AJ_T0071277.1 MGP_AJ_G0029435.1 mouse_genomes_project 5 31795175 31798723 - MGP_AJ_P0071277 Mfsd10 protein_coding protein_coding MGP_AJ_T0071278.1 MGP_AJ_G0029435.1 mouse_genomes_project 5 31795251 31798334 - MGP_AJ_P0071278 Mfsd10 protein_coding nonsense_mediated_decay MGP_AJ_T0071279.1 MGP_AJ_G0029435.1 mouse_genomes_project 5 31795441 31796418 - Mfsd10 protein_coding retained_intron MGP_AJ_T0071280.1 MGP_AJ_G0029435.1 mouse_genomes_project 5 31795521 31797651 - Mfsd10 protein_coding retained_intron MGP_AJ_T0071281.1 MGP_AJ_G0029435.1 mouse_genomes_project 5 31795840 31797052 - MGP_AJ_P0071281 Mfsd10 protein_coding nonsense_mediated_decay MGP_AJ_T0071282.1 MGP_AJ_G0029435.1 mouse_genomes_project 5 31796157 31796592 - MGP_AJ_P0071282 Mfsd10 protein_coding protein_coding MGP_AJ_T0071283.1 MGP_AJ_G0029435.1 mouse_genomes_project 5 31796181 31797643 - MGP_AJ_P0071283 Mfsd10 protein_coding nonsense_mediated_decay MGP_AJ_T0071284.1 MGP_AJ_G0029435.1 mouse_genomes_project 5 31796377 31797282 - MGP_AJ_P0071284 Mfsd10 protein_coding protein_coding MGP_AJ_T0071285.1 MGP_AJ_G0029435.1 mouse_genomes_project 5 31796458 31798720 - MGP_AJ_P0071285 Mfsd10 protein_coding protein_coding MGP_AJ_T0071286.1 MGP_AJ_G0029435.1 mouse_genomes_project 5 31796583 31798368 - MGP_AJ_P0071286 Mfsd10 protein_coding protein_coding MGP_AJ_T0071287.1 MGP_AJ_G0029435.1 mouse_genomes_project 5 31796590 31797150 - MGP_AJ_P0071287 Mfsd10 protein_coding protein_coding MGP_AJ_T0071288.1 MGP_AJ_G0029435.1 mouse_genomes_project 5 31796614 31797028 - Mfsd10 protein_coding retained_intron MGP_AJ_T0071289.1 MGP_AJ_G0029435.1 mouse_genomes_project 5 31796636 31798656 - MGP_AJ_P0071289 Mfsd10 protein_coding nonsense_mediated_decay MGP_AJ_T0071290.1 MGP_AJ_G0029435.1 mouse_genomes_project 5 31796912 31798049 - Mfsd10 protein_coding processed_transcript MGP_AJ_T0071291.1 MGP_AJ_G0029435.1 mouse_genomes_project 5 31797139 31798062 - Mfsd10 protein_coding processed_transcript MGP_AJ_T0071292.1 MGP_AJ_G0029435.1 mouse_genomes_project 5 31797555 31798587 - Mfsd10 protein_coding retained_intron MGP_AJ_T0071293.1 MGP_AJ_G0029435.1 mouse_genomes_project 5 31798120 31798671 - MGP_AJ_P0071293 Mfsd10 protein_coding protein_coding MGP_AJ_T0070328.1 MGP_AJ_G0029273.1 mouse_genomes_project 5 15201315 15291655 - MGP_AJ_P0070328 Gnai1 protein_coding protein_coding MGP_AJ_T0015029.1 MGP_AJ_G0013124.1 mouse_genomes_project 5 72603223 72604613 + processed_pseudogene processed_pseudogene MGP_AJ_T0072552.1 MGP_AJ_G0029664.1 mouse_genomes_project 5 85317294 85356310 + MGP_AJ_P0072552 Gm28434 protein_coding protein_coding MGP_AJ_T0101827.1 MGP_AJ_G0039730.1 mouse_genomes_project 5 74786214 74786601 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0101828.1 MGP_AJ_G0039730.1 mouse_genomes_project 5 74786230 74786785 - transcribed_processed_pseudogene processed_transcript MGP_AJ_T0001536.1 MGP_AJ_G0001454.1 mouse_genomes_project 5 41661632 41665248 - TEC TEC MGP_AJ_T0070638.1 MGP_AJ_G0029332.1 mouse_genomes_project 5 24755326 24806331 - MGP_AJ_P0070638 Paxip1 protein_coding protein_coding MGP_AJ_T0070639.1 MGP_AJ_G0029332.1 mouse_genomes_project 5 24759321 24766427 - Paxip1 protein_coding retained_intron MGP_AJ_T0070640.1 MGP_AJ_G0029332.1 mouse_genomes_project 5 24774508 24780510 - Paxip1 protein_coding retained_intron MGP_AJ_T0070641.1 MGP_AJ_G0029332.1 mouse_genomes_project 5 24787250 24806176 - MGP_AJ_P0070641 Paxip1 protein_coding nonsense_mediated_decay MGP_AJ_T0070642.1 MGP_AJ_G0029332.1 mouse_genomes_project 5 24796221 24806472 - Paxip1 protein_coding processed_transcript MGP_AJ_T0070643.1 MGP_AJ_G0029332.1 mouse_genomes_project 5 24798352 24806164 - Paxip1 protein_coding retained_intron MGP_AJ_T0070644.1 MGP_AJ_G0029332.1 mouse_genomes_project 5 24801318 24805145 - Paxip1 protein_coding retained_intron MGP_AJ_T0001904.1 MGP_AJ_G0001817.1 mouse_genomes_project 5 148601259 148602897 + TEC TEC MGP_AJ_T0001864.1 MGP_AJ_G0001778.1 mouse_genomes_project 5 130842400 130844707 - TEC TEC MGP_AJ_T0010681.1 MGP_AJ_G0008803.1 mouse_genomes_project 5 62183041 62183119 + Mir574 miRNA miRNA MGP_AJ_T0074992.1 MGP_AJ_G0030145.1 mouse_genomes_project 5 133715654 133777652 + MGP_AJ_P0074992 Baz1b protein_coding protein_coding MGP_AJ_T0074993.1 MGP_AJ_G0030145.1 mouse_genomes_project 5 133716040 133777631 + MGP_AJ_P0074993 Baz1b protein_coding unknown_likely_coding MGP_AJ_T0074994.1 MGP_AJ_G0030145.1 mouse_genomes_project 5 133727666 133730684 + Baz1b protein_coding retained_intron MGP_AJ_T0074995.1 MGP_AJ_G0030145.1 mouse_genomes_project 5 133735806 133741782 + Baz1b protein_coding retained_intron MGP_AJ_T0074996.1 MGP_AJ_G0030145.1 mouse_genomes_project 5 133738329 133747979 + Baz1b protein_coding retained_intron MGP_AJ_T0074997.1 MGP_AJ_G0030145.1 mouse_genomes_project 5 133773911 133775705 + Baz1b protein_coding retained_intron MGP_AJ_T0001867.1 MGP_AJ_G0001781.1 mouse_genomes_project 5 130963441 130965838 - TEC TEC MGP_AJ_T0004682.1 MGP_AJ_G0004051.1 mouse_genomes_project 5 40719917 40727758 - Gm15866 antisense antisense MGP_AJ_T0004683.1 MGP_AJ_G0004051.1 mouse_genomes_project 5 40727273 40776911 - Gm15866 antisense antisense MGP_AJ_T0071434.1 MGP_AJ_G0029462.1 mouse_genomes_project 5 34049516 34135216 + MGP_AJ_P0071434 Ppp2r2c protein_coding protein_coding MGP_AJ_T0071435.1 MGP_AJ_G0029462.1 mouse_genomes_project 5 34049666 34111786 + MGP_AJ_P0071435 Ppp2r2c protein_coding protein_coding MGP_AJ_T0071436.1 MGP_AJ_G0029462.1 mouse_genomes_project 5 34119796 34120554 + Ppp2r2c protein_coding processed_transcript MGP_AJ_T0001614.1 MGP_AJ_G0001531.1 mouse_genomes_project 5 55147832 55149027 + TEC TEC MGP_AJ_T0071377.1 MGP_AJ_G0029451.1 mouse_genomes_project 5 32945759 33073421 + MGP_AJ_P0071377 Ablim2 protein_coding protein_coding MGP_AJ_T0071378.1 MGP_AJ_G0029451.1 mouse_genomes_project 5 32945759 33073928 + MGP_AJ_P0071378 Ablim2 protein_coding protein_coding MGP_AJ_T0071379.1 MGP_AJ_G0029451.1 mouse_genomes_project 5 32945803 33073104 + MGP_AJ_P0071379 Ablim2 protein_coding protein_coding MGP_AJ_T0071380.1 MGP_AJ_G0029451.1 mouse_genomes_project 5 32945810 33073928 + MGP_AJ_P0071380 Ablim2 protein_coding protein_coding MGP_AJ_T0071381.1 MGP_AJ_G0029451.1 mouse_genomes_project 5 32945810 33073420 + MGP_AJ_P0071381 Ablim2 protein_coding nonsense_mediated_decay MGP_AJ_T0071382.1 MGP_AJ_G0029451.1 mouse_genomes_project 5 32945845 33073421 + MGP_AJ_P0071382 Ablim2 protein_coding protein_coding MGP_AJ_T0071383.1 MGP_AJ_G0029451.1 mouse_genomes_project 5 32945930 33072374 + MGP_AJ_P0071383 Ablim2 protein_coding protein_coding MGP_AJ_T0071384.1 MGP_AJ_G0029451.1 mouse_genomes_project 5 33002208 33031696 + MGP_AJ_P0071384 Ablim2 protein_coding protein_coding MGP_AJ_T0071385.1 MGP_AJ_G0029451.1 mouse_genomes_project 5 33002275 33072374 + MGP_AJ_P0071385 Ablim2 protein_coding protein_coding MGP_AJ_T0071386.1 MGP_AJ_G0029451.1 mouse_genomes_project 5 33002289 33021594 + MGP_AJ_P0071386 Ablim2 protein_coding protein_coding MGP_AJ_T0071387.1 MGP_AJ_G0029451.1 mouse_genomes_project 5 33016821 33063847 + MGP_AJ_P0071387 Ablim2 protein_coding protein_coding MGP_AJ_T0071388.1 MGP_AJ_G0029451.1 mouse_genomes_project 5 33016852 33030019 + Ablim2 protein_coding retained_intron MGP_AJ_T0071389.1 MGP_AJ_G0029451.1 mouse_genomes_project 5 33016852 33047081 + MGP_AJ_P0071389 Ablim2 protein_coding protein_coding MGP_AJ_T0071390.1 MGP_AJ_G0029451.1 mouse_genomes_project 5 33029839 33047408 + MGP_AJ_P0071390 Ablim2 protein_coding protein_coding MGP_AJ_T0071391.1 MGP_AJ_G0029451.1 mouse_genomes_project 5 33038031 33058129 + Ablim2 protein_coding retained_intron MGP_AJ_T0071392.1 MGP_AJ_G0029451.1 mouse_genomes_project 5 33046287 33047408 + Ablim2 protein_coding retained_intron MGP_AJ_T0071393.1 MGP_AJ_G0029451.1 mouse_genomes_project 5 33047115 33072474 + MGP_AJ_P0071393 Ablim2 protein_coding protein_coding MGP_AJ_T0004755.1 MGP_AJ_G0004106.1 mouse_genomes_project 5 100165686 100174686 - 1700013M08Rik antisense antisense MGP_AJ_T0004756.1 MGP_AJ_G0004106.1 mouse_genomes_project 5 100170595 100171393 - 1700013M08Rik antisense antisense MGP_AJ_T0073441.1 MGP_AJ_G0029870.1 mouse_genomes_project 5 110441267 110443907 - Srrd protein_coding processed_transcript MGP_AJ_T0073442.1 MGP_AJ_G0029870.1 mouse_genomes_project 5 110441267 110446905 - MGP_AJ_P0073442 Srrd protein_coding protein_coding MGP_AJ_T0073443.1 MGP_AJ_G0029870.1 mouse_genomes_project 5 110441267 110446925 - MGP_AJ_P0073443 Srrd protein_coding protein_coding MGP_AJ_T0073444.1 MGP_AJ_G0029870.1 mouse_genomes_project 5 110441784 110443817 - Srrd protein_coding retained_intron MGP_AJ_T0073445.1 MGP_AJ_G0029870.1 mouse_genomes_project 5 110441847 110446903 - Srrd protein_coding processed_transcript MGP_AJ_T0073446.1 MGP_AJ_G0029870.1 mouse_genomes_project 5 110443603 110444104 - Srrd protein_coding processed_transcript MGP_AJ_T0072468.1 MGP_AJ_G0029642.1 mouse_genomes_project 5 84069411 84103345 + MGP_AJ_P0072468 Ythdc1 protein_coding protein_coding MGP_AJ_T0072469.1 MGP_AJ_G0029642.1 mouse_genomes_project 5 84069423 84103350 + MGP_AJ_P0072469 Ythdc1 protein_coding protein_coding MGP_AJ_T0072470.1 MGP_AJ_G0029642.1 mouse_genomes_project 5 84069686 84103350 + MGP_AJ_P0072470 Ythdc1 protein_coding nonsense_mediated_decay MGP_AJ_T0072471.1 MGP_AJ_G0029642.1 mouse_genomes_project 5 84069754 84103352 + MGP_AJ_P0072471 Ythdc1 protein_coding unknown_likely_coding MGP_AJ_T0072472.1 MGP_AJ_G0029642.1 mouse_genomes_project 5 84069754 84103348 + MGP_AJ_P0072472 Ythdc1 protein_coding protein_coding MGP_AJ_T0072473.1 MGP_AJ_G0029642.1 mouse_genomes_project 5 84071758 84075774 + Ythdc1 protein_coding retained_intron MGP_AJ_T0072474.1 MGP_AJ_G0029642.1 mouse_genomes_project 5 84081750 84103350 + Ythdc1 protein_coding retained_intron MGP_AJ_T0072475.1 MGP_AJ_G0029642.1 mouse_genomes_project 5 84089280 84094429 + Ythdc1 protein_coding retained_intron MGP_AJ_T0072476.1 MGP_AJ_G0029642.1 mouse_genomes_project 5 84095413 84101828 + Ythdc1 protein_coding processed_transcript MGP_AJ_T0072477.1 MGP_AJ_G0029642.1 mouse_genomes_project 5 84097858 84103348 + Ythdc1 protein_coding retained_intron MGP_AJ_T0071350.1 MGP_AJ_G0029446.1 mouse_genomes_project 5 32685033 32708617 - MGP_AJ_P0071350 Cpz protein_coding protein_coding MGP_AJ_T0071351.1 MGP_AJ_G0029446.1 mouse_genomes_project 5 32700757 32708493 - MGP_AJ_P0071351 Cpz protein_coding protein_coding MGP_AJ_T0073871.1 MGP_AJ_G0029951.1 mouse_genomes_project 5 115540378 115549773 + Wsb2 protein_coding retained_intron MGP_AJ_T0073872.1 MGP_AJ_G0029951.1 mouse_genomes_project 5 115540485 115561658 + MGP_AJ_P0073872 Wsb2 protein_coding unknown_likely_coding MGP_AJ_T0073873.1 MGP_AJ_G0029951.1 mouse_genomes_project 5 115544043 115553919 + Wsb2 protein_coding processed_transcript MGP_AJ_T0073874.1 MGP_AJ_G0029951.1 mouse_genomes_project 5 115546529 115561913 + MGP_AJ_P0073874 Wsb2 protein_coding protein_coding MGP_AJ_T0073875.1 MGP_AJ_G0029951.1 mouse_genomes_project 5 115558622 115561586 + Wsb2 protein_coding retained_intron MGP_AJ_T0073876.1 MGP_AJ_G0029951.1 mouse_genomes_project 5 115559420 115561621 + Wsb2 protein_coding retained_intron MGP_AJ_T0098457.1 MGP_AJ_G0036441.1 mouse_genomes_project 5 134195024 134195406 - pseudogene pseudogene MGP_AJ_T0070824.1 MGP_AJ_G0029369.1 mouse_genomes_project 5 27977490 27981529 - MGP_AJ_P0070824 Preb protein_coding protein_coding MGP_AJ_T0070825.1 MGP_AJ_G0029369.1 mouse_genomes_project 5 27977533 27982937 - MGP_AJ_P0070825 Preb protein_coding protein_coding MGP_AJ_T0070826.1 MGP_AJ_G0029369.1 mouse_genomes_project 5 27977859 27980875 - Preb protein_coding processed_transcript MGP_AJ_T0070827.1 MGP_AJ_G0029369.1 mouse_genomes_project 5 27977985 27978676 - Preb protein_coding retained_intron MGP_AJ_T0070828.1 MGP_AJ_G0029369.1 mouse_genomes_project 5 27978424 27981452 - Preb protein_coding retained_intron MGP_AJ_T0070829.1 MGP_AJ_G0029369.1 mouse_genomes_project 5 27980763 27981450 - Preb protein_coding retained_intron MGP_AJ_T0070830.1 MGP_AJ_G0029369.1 mouse_genomes_project 5 27980911 27982014 - Preb protein_coding retained_intron MGP_AJ_T0070831.1 MGP_AJ_G0029369.1 mouse_genomes_project 5 27981498 27983102 - Preb protein_coding processed_transcript MGP_AJ_T0070832.1 MGP_AJ_G0029369.1 mouse_genomes_project 5 27981668 27982387 - Preb protein_coding processed_transcript MGP_AJ_T0070833.1 MGP_AJ_G0029369.1 mouse_genomes_project 5 27981726 27983084 - Preb protein_coding retained_intron MGP_AJ_T0070834.1 MGP_AJ_G0029369.1 mouse_genomes_project 5 27982148 27983094 - Preb protein_coding processed_transcript MGP_AJ_T0073966.1 MGP_AJ_G0029972.1 mouse_genomes_project 5 118840013 118858022 - MGP_AJ_P0073966 Rita1 protein_coding protein_coding MGP_AJ_T0073967.1 MGP_AJ_G0029972.1 mouse_genomes_project 5 118847814 118857320 - MGP_AJ_P0073967 Rita1 protein_coding protein_coding MGP_AJ_T0073968.1 MGP_AJ_G0029972.1 mouse_genomes_project 5 118847815 118851294 - Rita1 protein_coding processed_transcript MGP_AJ_T0073969.1 MGP_AJ_G0029972.1 mouse_genomes_project 5 118852612 118858272 - Rita1 protein_coding processed_transcript MGP_AJ_T0073970.1 MGP_AJ_G0029972.1 mouse_genomes_project 5 118854629 118858272 - MGP_AJ_P0073970 Rita1 protein_coding protein_coding MGP_AJ_T0073971.1 MGP_AJ_G0029972.1 mouse_genomes_project 5 118854629 118858272 - MGP_AJ_P0073971 Rita1 protein_coding protein_coding MGP_AJ_T0073972.1 MGP_AJ_G0029972.1 mouse_genomes_project 5 118855482 118858253 - MGP_AJ_P0073972 Rita1 protein_coding protein_coding MGP_AJ_T0001577.1 MGP_AJ_G0001494.1 mouse_genomes_project 5 46278403 46280509 - TEC TEC MGP_AJ_T0001574.1 MGP_AJ_G0001491.1 mouse_genomes_project 5 46232025 46235491 + TEC TEC MGP_AJ_T0001674.1 MGP_AJ_G0001590.1 mouse_genomes_project 5 66420506 66421537 - TEC TEC MGP_AJ_T0001863.1 MGP_AJ_G0001777.1 mouse_genomes_project 5 130675865 130677501 - TEC TEC MGP_AJ_T0004851.1 MGP_AJ_G0004175.1 mouse_genomes_project 5 133270251 133347180 + Gm43278 antisense antisense MGP_AJ_T0014905.1 MGP_AJ_G0013000.1 mouse_genomes_project 5 21180642 21181040 - processed_pseudogene processed_pseudogene MGP_AJ_T0100037.1 MGP_AJ_G0038003.1 mouse_genomes_project 5 98208718 98208878 - Gm23173 snRNA snRNA MGP_AJ_T0008377.1 MGP_AJ_G0006801.1 mouse_genomes_project 5 123793015 123803122 + Gm42485 lincRNA lincRNA MGP_AJ_T0008073.1 MGP_AJ_G0006587.1 mouse_genomes_project 5 22478969 22481445 + 4831440E17Rik lincRNA lincRNA MGP_AJ_T0015041.1 MGP_AJ_G0013136.1 mouse_genomes_project 5 76826041 76827152 + processed_pseudogene processed_pseudogene MGP_AJ_T0008439.1 MGP_AJ_G0006842.1 mouse_genomes_project 5 142214440 142216879 + BC030343 lincRNA lincRNA MGP_AJ_T0074064.1 MGP_AJ_G0029996.1 mouse_genomes_project 5 119861659 119890062 - MGP_AJ_P0074064 Gm42878 protein_coding protein_coding MGP_AJ_T0074065.1 MGP_AJ_G0029996.1 mouse_genomes_project 5 119861659 119890062 - MGP_AJ_P0074065 Gm42878 protein_coding nonsense_mediated_decay MGP_AJ_T0073109.1 MGP_AJ_G0029799.1 mouse_genomes_project 5 105166205 105222811 + MGP_AJ_P0073109 Brdt protein_coding protein_coding MGP_AJ_T0073110.1 MGP_AJ_G0029799.1 mouse_genomes_project 5 105166221 105185959 + MGP_AJ_P0073110 Brdt protein_coding protein_coding MGP_AJ_T0073111.1 MGP_AJ_G0029799.1 mouse_genomes_project 5 105166238 105177186 + Brdt protein_coding processed_transcript MGP_AJ_T0073112.1 MGP_AJ_G0029799.1 mouse_genomes_project 5 105204872 105222060 + Brdt protein_coding processed_transcript MGP_AJ_T0004842.1 MGP_AJ_G0004167.1 mouse_genomes_project 5 127224920 127233289 + Gm42875 antisense antisense MGP_AJ_T0010738.1 MGP_AJ_G0008860.1 mouse_genomes_project 5 146451292 146451402 - Mir7k miRNA miRNA MGP_AJ_T0001624.1 MGP_AJ_G0001541.1 mouse_genomes_project 5 60847615 60852340 - TEC TEC MGP_AJ_T0001625.1 MGP_AJ_G0001541.1 mouse_genomes_project 5 60851395 60851710 - TEC TEC MGP_AJ_T0071507.1 MGP_AJ_G0029474.1 mouse_genomes_project 5 35399509 35409742 + MGP_AJ_P0071507 Lyar protein_coding protein_coding MGP_AJ_T0071508.1 MGP_AJ_G0029474.1 mouse_genomes_project 5 35399547 35406954 + MGP_AJ_P0071508 Lyar protein_coding protein_coding MGP_AJ_T0071509.1 MGP_AJ_G0029474.1 mouse_genomes_project 5 35399554 35409743 + MGP_AJ_P0071509 Lyar protein_coding protein_coding MGP_AJ_T0071510.1 MGP_AJ_G0029474.1 mouse_genomes_project 5 35399556 35410027 + MGP_AJ_P0071510 Lyar protein_coding nonsense_mediated_decay MGP_AJ_T0071511.1 MGP_AJ_G0029474.1 mouse_genomes_project 5 35399566 35413344 + MGP_AJ_P0071511 Lyar protein_coding protein_coding MGP_AJ_T0071512.1 MGP_AJ_G0029474.1 mouse_genomes_project 5 35399577 35404952 + MGP_AJ_P0071512 Lyar protein_coding protein_coding MGP_AJ_T0071513.1 MGP_AJ_G0029474.1 mouse_genomes_project 5 35399581 35407138 + MGP_AJ_P0071513 Lyar protein_coding protein_coding MGP_AJ_T0071514.1 MGP_AJ_G0029474.1 mouse_genomes_project 5 35402002 35409722 + MGP_AJ_P0071514 Lyar protein_coding nonsense_mediated_decay MGP_AJ_T0071515.1 MGP_AJ_G0029474.1 mouse_genomes_project 5 35403686 35405499 + Lyar protein_coding retained_intron MGP_AJ_T0073977.1 MGP_AJ_G0029974.1 mouse_genomes_project 5 118873999 118879899 - MGP_AJ_P0073977 Cfap73 protein_coding protein_coding MGP_AJ_T0008402.1 MGP_AJ_G0006816.1 mouse_genomes_project 5 126900491 126901364 + Gm42500 lincRNA lincRNA MGP_AJ_T0001687.1 MGP_AJ_G0001602.1 mouse_genomes_project 5 70436544 70439006 - TEC TEC MGP_AJ_T0001717.1 MGP_AJ_G0001632.1 mouse_genomes_project 5 90552522 90554659 + TEC TEC MGP_AJ_T0015111.1 MGP_AJ_G0013206.1 mouse_genomes_project 5 106689351 106690754 + processed_pseudogene processed_pseudogene MGP_AJ_T0014946.1 MGP_AJ_G0013041.1 mouse_genomes_project 5 33105846 33106152 + processed_pseudogene processed_pseudogene MGP_AJ_T0073319.1 MGP_AJ_G0029847.1 mouse_genomes_project 5 108308186 108336470 + MGP_AJ_P0073319 Ankle2 protein_coding protein_coding MGP_AJ_T0073320.1 MGP_AJ_G0029847.1 mouse_genomes_project 5 108308186 108335283 + MGP_AJ_P0073320 Ankle2 protein_coding protein_coding MGP_AJ_T0073321.1 MGP_AJ_G0029847.1 mouse_genomes_project 5 108308223 108336466 + MGP_AJ_P0073321 Ankle2 protein_coding protein_coding MGP_AJ_T0073322.1 MGP_AJ_G0029847.1 mouse_genomes_project 5 108308345 108315363 + Ankle2 protein_coding retained_intron MGP_AJ_T0073323.1 MGP_AJ_G0029847.1 mouse_genomes_project 5 108314703 108315445 + Ankle2 protein_coding retained_intron MGP_AJ_T0073324.1 MGP_AJ_G0029847.1 mouse_genomes_project 5 108329767 108332877 + Ankle2 protein_coding processed_transcript MGP_AJ_T0014947.1 MGP_AJ_G0013042.1 mouse_genomes_project 5 34489387 34489538 - processed_pseudogene processed_pseudogene MGP_AJ_T0001797.1 MGP_AJ_G0001712.1 mouse_genomes_project 5 119301834 119304139 - TEC TEC MGP_AJ_T0008127.1 MGP_AJ_G0006621.1 mouse_genomes_project 5 40543145 40546269 + Gm43699 lincRNA lincRNA MGP_AJ_T0018166.1 MGP_AJ_G0015582.1 mouse_genomes_project 5 73581812 73592461 + 4930432L08Rik processed_transcript processed_transcript MGP_AJ_T0073482.1 MGP_AJ_G0029879.1 mouse_genomes_project 5 111197964 111203220 - MGP_AJ_P0073482 Crybb3 protein_coding protein_coding MGP_AJ_T0073483.1 MGP_AJ_G0029879.1 mouse_genomes_project 5 111197964 111202777 - MGP_AJ_P0073483 Crybb3 protein_coding protein_coding MGP_AJ_T0073484.1 MGP_AJ_G0029879.1 mouse_genomes_project 5 111197964 111203694 - MGP_AJ_P0073484 Crybb3 protein_coding protein_coding MGP_AJ_T0073485.1 MGP_AJ_G0029879.1 mouse_genomes_project 5 111197968 111203220 - MGP_AJ_P0073485 Crybb3 protein_coding protein_coding MGP_AJ_T0073486.1 MGP_AJ_G0029879.1 mouse_genomes_project 5 111197972 111203693 - MGP_AJ_P0073486 Crybb3 protein_coding protein_coding MGP_AJ_T0073487.1 MGP_AJ_G0029879.1 mouse_genomes_project 5 111199147 111202501 - Crybb3 protein_coding retained_intron MGP_AJ_T0073488.1 MGP_AJ_G0029879.1 mouse_genomes_project 5 111199412 111202776 - Crybb3 protein_coding retained_intron MGP_AJ_T0073489.1 MGP_AJ_G0029879.1 mouse_genomes_project 5 111200498 111202763 - MGP_AJ_P0073489 Crybb3 protein_coding protein_coding MGP_AJ_T0073490.1 MGP_AJ_G0029879.1 mouse_genomes_project 5 111200581 111203689 - MGP_AJ_P0073490 Crybb3 protein_coding protein_coding MGP_AJ_T0073491.1 MGP_AJ_G0029879.1 mouse_genomes_project 5 111200647 111203690 - Crybb3 protein_coding processed_transcript MGP_AJ_T0073492.1 MGP_AJ_G0029879.1 mouse_genomes_project 5 111201866 111203169 - MGP_AJ_P0073492 Crybb3 protein_coding protein_coding MGP_AJ_T0074343.1 MGP_AJ_G0030034.1 mouse_genomes_project 5 121803297 121833589 + Bcl7a protein_coding processed_transcript MGP_AJ_T0074344.1 MGP_AJ_G0030034.1 mouse_genomes_project 5 121803911 121834490 + MGP_AJ_P0074344 Bcl7a protein_coding protein_coding MGP_AJ_T0074345.1 MGP_AJ_G0030034.1 mouse_genomes_project 5 121803963 121819648 + MGP_AJ_P0074345 Bcl7a protein_coding protein_coding MGP_AJ_T0073017.1 MGP_AJ_G0029776.1 mouse_genomes_project 5 101988532 102000871 + MGP_AJ_P0073017 Ibsp protein_coding protein_coding MGP_AJ_T0004850.1 MGP_AJ_G0004174.1 mouse_genomes_project 5 133198534 133202199 + Gm10369 antisense antisense MGP_AJ_T0015002.1 MGP_AJ_G0013097.1 mouse_genomes_project 5 59187989 59188605 + processed_pseudogene processed_pseudogene MGP_AJ_T0004635.1 MGP_AJ_G0004013.1 mouse_genomes_project 5 10923326 10941320 - Gm4128 antisense antisense MGP_AJ_T0014970.1 MGP_AJ_G0013065.1 mouse_genomes_project 5 47053060 47055357 - processed_pseudogene processed_pseudogene MGP_AJ_T0075183.1 MGP_AJ_G0030180.1 mouse_genomes_project 5 135554994 135560923 - MGP_AJ_P0075183 Znhit1 protein_coding protein_coding MGP_AJ_T0075184.1 MGP_AJ_G0030180.1 mouse_genomes_project 5 135555019 135559727 - MGP_AJ_P0075184 Znhit1 protein_coding protein_coding MGP_AJ_T0075185.1 MGP_AJ_G0030180.1 mouse_genomes_project 5 135555024 135559724 - MGP_AJ_P0075185 Znhit1 protein_coding protein_coding MGP_AJ_T0075186.1 MGP_AJ_G0030180.1 mouse_genomes_project 5 135555151 135560127 - MGP_AJ_P0075186 Znhit1 protein_coding protein_coding MGP_AJ_T0075187.1 MGP_AJ_G0030180.1 mouse_genomes_project 5 135555813 135560403 - MGP_AJ_P0075187 Znhit1 protein_coding protein_coding MGP_AJ_T0001764.1 MGP_AJ_G0001679.1 mouse_genomes_project 5 111264639 111265020 + TEC TEC MGP_AJ_T0072169.1 MGP_AJ_G0029587.1 mouse_genomes_project 5 70203149 70212045 - MGP_AJ_P0072169 Gm10135 protein_coding protein_coding MGP_AJ_T0070064.1 MGP_AJ_G0029226.1 mouse_genomes_project 5 347097 369596 + MGP_AJ_P0070064 Tmbim7 protein_coding protein_coding MGP_AJ_T0070065.1 MGP_AJ_G0029226.1 mouse_genomes_project 5 352576 375763 + MGP_AJ_P0070065 Tmbim7 protein_coding protein_coding MGP_AJ_T0070066.1 MGP_AJ_G0029226.1 mouse_genomes_project 5 352751 362649 + Tmbim7 protein_coding retained_intron MGP_AJ_T0070067.1 MGP_AJ_G0029226.1 mouse_genomes_project 5 352752 375891 + MGP_AJ_P0070067 Tmbim7 protein_coding protein_coding MGP_AJ_T0070068.1 MGP_AJ_G0029226.1 mouse_genomes_project 5 357302 376672 + MGP_AJ_P0070068 Tmbim7 protein_coding protein_coding MGP_AJ_T0075933.1 MGP_AJ_G0030337.1 mouse_genomes_project 5 144397717 144789725 - MGP_AJ_P0075933 Cyp3a44 protein_coding protein_coding MGP_AJ_T0014852.1 MGP_AJ_G0012947.1 mouse_genomes_project 5 4660102 4660842 + processed_pseudogene processed_pseudogene MGP_AJ_T0075066.1 MGP_AJ_G0030161.1 mouse_genomes_project 5 134468615 134494506 - MGP_AJ_P0075066 Ywhag protein_coding protein_coding MGP_AJ_T0075067.1 MGP_AJ_G0030161.1 mouse_genomes_project 5 134468615 134494461 - MGP_AJ_P0075067 Ywhag protein_coding protein_coding MGP_AJ_T0075068.1 MGP_AJ_G0030161.1 mouse_genomes_project 5 134490586 134494504 - Ywhag protein_coding retained_intron MGP_AJ_T0075069.1 MGP_AJ_G0030161.1 mouse_genomes_project 5 134490591 134494523 - Ywhag protein_coding processed_transcript MGP_AJ_T0075070.1 MGP_AJ_G0030161.1 mouse_genomes_project 5 134490667 134494457 - Ywhag protein_coding processed_transcript MGP_AJ_T0004722.1 MGP_AJ_G0004083.1 mouse_genomes_project 5 72418747 72419346 - Gm42802 antisense antisense MGP_AJ_T0073126.1 MGP_AJ_G0029804.1 mouse_genomes_project 5 105346291 105389212 + MGP_AJ_P0073126 protein_coding protein_coding MGP_AJ_T0004856.1 MGP_AJ_G0004178.1 mouse_genomes_project 5 133648628 133649512 - Gm43500 antisense antisense MGP_AJ_T0001585.1 MGP_AJ_G0001502.1 mouse_genomes_project 5 48002761 48005432 + TEC TEC MGP_AJ_T0001650.1 MGP_AJ_G0001566.1 mouse_genomes_project 5 63321555 63325803 - TEC TEC MGP_AJ_T0072126.1 MGP_AJ_G0029580.1 mouse_genomes_project 5 69731720 69774299 - MGP_AJ_P0072126 Nfxl1 protein_coding protein_coding MGP_AJ_T0072127.1 MGP_AJ_G0029580.1 mouse_genomes_project 5 69731723 69774260 - MGP_AJ_P0072127 Nfxl1 protein_coding nonsense_mediated_decay MGP_AJ_T0072128.1 MGP_AJ_G0029580.1 mouse_genomes_project 5 69731934 69735005 - Nfxl1 protein_coding retained_intron MGP_AJ_T0072129.1 MGP_AJ_G0029580.1 mouse_genomes_project 5 69734559 69739905 - Nfxl1 protein_coding retained_intron MGP_AJ_T0072130.1 MGP_AJ_G0029580.1 mouse_genomes_project 5 69739445 69742366 - Nfxl1 protein_coding retained_intron MGP_AJ_T0072131.1 MGP_AJ_G0029580.1 mouse_genomes_project 5 69758065 69774214 - MGP_AJ_P0072131 Nfxl1 protein_coding protein_coding MGP_AJ_T0072132.1 MGP_AJ_G0029580.1 mouse_genomes_project 5 69764836 69774027 - Nfxl1 protein_coding retained_intron MGP_AJ_T0072133.1 MGP_AJ_G0029580.1 mouse_genomes_project 5 69764838 69774263 - Nfxl1 protein_coding retained_intron MGP_AJ_T0072134.1 MGP_AJ_G0029580.1 mouse_genomes_project 5 69770066 69774238 - Nfxl1 protein_coding retained_intron MGP_AJ_T0075373.1 MGP_AJ_G0030218.1 mouse_genomes_project 5 136614995 136670890 + MGP_AJ_P0075373 protein_coding protein_coding MGP_AJ_T0008397.1 MGP_AJ_G0006812.1 mouse_genomes_project 5 125617927 125631666 + 4930572K03Rik lincRNA lincRNA MGP_AJ_T0008398.1 MGP_AJ_G0006812.1 mouse_genomes_project 5 125617932 125631680 + 4930572K03Rik lincRNA lincRNA MGP_AJ_T0008242.1 MGP_AJ_G0006713.1 mouse_genomes_project 5 98609551 98613257 - Gm36793 lincRNA lincRNA MGP_AJ_T0073302.1 MGP_AJ_G0029845.1 mouse_genomes_project 5 108213578 108214303 + MGP_AJ_P0073302 Chfr protein_coding protein_coding MGP_AJ_T0073303.1 MGP_AJ_G0029845.1 mouse_genomes_project 5 108213585 108252725 + MGP_AJ_P0073303 Chfr protein_coding protein_coding MGP_AJ_T0073304.1 MGP_AJ_G0029845.1 mouse_genomes_project 5 108213585 108241682 + MGP_AJ_P0073304 Chfr protein_coding nonsense_mediated_decay MGP_AJ_T0073305.1 MGP_AJ_G0029845.1 mouse_genomes_project 5 108213587 108252274 + MGP_AJ_P0073305 Chfr protein_coding nonsense_mediated_decay MGP_AJ_T0073306.1 MGP_AJ_G0029845.1 mouse_genomes_project 5 108213593 108252413 + MGP_AJ_P0073306 Chfr protein_coding protein_coding MGP_AJ_T0073307.1 MGP_AJ_G0029845.1 mouse_genomes_project 5 108213596 108249156 + Chfr protein_coding retained_intron MGP_AJ_T0073308.1 MGP_AJ_G0029845.1 mouse_genomes_project 5 108213596 108252726 + MGP_AJ_P0073308 Chfr protein_coding protein_coding MGP_AJ_T0073309.1 MGP_AJ_G0029845.1 mouse_genomes_project 5 108213614 108252723 + MGP_AJ_P0073309 Chfr protein_coding nonsense_mediated_decay MGP_AJ_T0073310.1 MGP_AJ_G0029845.1 mouse_genomes_project 5 108213643 108224293 + MGP_AJ_P0073310 Chfr protein_coding nonsense_mediated_decay MGP_AJ_T0073311.1 MGP_AJ_G0029845.1 mouse_genomes_project 5 108213661 108221401 + MGP_AJ_P0073311 Chfr protein_coding protein_coding MGP_AJ_T0073312.1 MGP_AJ_G0029845.1 mouse_genomes_project 5 108232710 108240829 + Chfr protein_coding retained_intron MGP_AJ_T0073313.1 MGP_AJ_G0029845.1 mouse_genomes_project 5 108241680 108251759 + Chfr protein_coding retained_intron MGP_AJ_T0073045.1 MGP_AJ_G0029789.1 mouse_genomes_project 5 103223921 103290278 + MGP_AJ_P0073045 Lrrc8b protein_coding protein_coding MGP_AJ_T0015174.1 MGP_AJ_G0013269.1 mouse_genomes_project 5 136711552 136711754 + processed_pseudogene processed_pseudogene MGP_AJ_T0001513.1 MGP_AJ_G0001431.1 mouse_genomes_project 5 32737176 32737822 - TEC TEC MGP_AJ_T0071244.1 MGP_AJ_G0029432.1 mouse_genomes_project 5 31654721 31672450 - MGP_AJ_P0071244 Tnip2 protein_coding protein_coding MGP_AJ_T0071245.1 MGP_AJ_G0029432.1 mouse_genomes_project 5 31654721 31672422 - MGP_AJ_P0071245 Tnip2 protein_coding protein_coding MGP_AJ_T0071246.1 MGP_AJ_G0029432.1 mouse_genomes_project 5 31654764 31672397 - MGP_AJ_P0071246 Tnip2 protein_coding protein_coding MGP_AJ_T0071247.1 MGP_AJ_G0029432.1 mouse_genomes_project 5 31658239 31660253 - Tnip2 protein_coding retained_intron MGP_AJ_T0071248.1 MGP_AJ_G0029432.1 mouse_genomes_project 5 31659806 31672308 - Tnip2 protein_coding retained_intron MGP_AJ_T0071249.1 MGP_AJ_G0029432.1 mouse_genomes_project 5 31661920 31672119 - Tnip2 protein_coding retained_intron MGP_AJ_T0072647.1 MGP_AJ_G0029695.1 mouse_genomes_project 5 88250981 88254587 + Cxcl3 protein_coding retained_intron MGP_AJ_T0072648.1 MGP_AJ_G0029695.1 mouse_genomes_project 5 88250981 88253080 + MGP_AJ_P0072648 Cxcl3 protein_coding protein_coding MGP_AJ_T0075562.1 MGP_AJ_G0030257.1 mouse_genomes_project 5 138573033 138603576 - MGP_AJ_P0075562 Micall2 protein_coding protein_coding MGP_AJ_T0075563.1 MGP_AJ_G0030257.1 mouse_genomes_project 5 138573231 138576521 - Micall2 protein_coding retained_intron MGP_AJ_T0075564.1 MGP_AJ_G0030257.1 mouse_genomes_project 5 138576428 138577913 - MGP_AJ_P0075564 Micall2 protein_coding nonsense_mediated_decay MGP_AJ_T0004702.1 MGP_AJ_G0004066.1 mouse_genomes_project 5 61126933 61128003 + Gm15819 antisense antisense MGP_AJ_T0073121.1 MGP_AJ_G0029803.1 mouse_genomes_project 5 105334626 105348555 + MGP_AJ_P0073121 protein_coding protein_coding MGP_AJ_T0073122.1 MGP_AJ_G0029803.1 mouse_genomes_project 5 105334993 105349904 + MGP_AJ_P0073122 protein_coding protein_coding MGP_AJ_T0073123.1 MGP_AJ_G0029803.1 mouse_genomes_project 5 105335024 105344438 + MGP_AJ_P0073123 protein_coding protein_coding MGP_AJ_T0073124.1 MGP_AJ_G0029803.1 mouse_genomes_project 5 105335027 105347556 + MGP_AJ_P0073124 protein_coding protein_coding MGP_AJ_T0073125.1 MGP_AJ_G0029803.1 mouse_genomes_project 5 105341290 105344570 + protein_coding processed_transcript MGP_AJ_T0008171.1 MGP_AJ_G0006658.1 mouse_genomes_project 5 70519087 70534647 - 1700025M24Rik lincRNA lincRNA MGP_AJ_T0008172.1 MGP_AJ_G0006658.1 mouse_genomes_project 5 70519087 70534659 - 1700025M24Rik lincRNA lincRNA MGP_AJ_T0008173.1 MGP_AJ_G0006658.1 mouse_genomes_project 5 70519105 70534653 - 1700025M24Rik lincRNA lincRNA MGP_AJ_T0072155.1 MGP_AJ_G0029585.1 mouse_genomes_project 5 69991864 70106226 - MGP_AJ_P0072155 Tec protein_coding protein_coding MGP_AJ_T0072156.1 MGP_AJ_G0029585.1 mouse_genomes_project 5 69991871 70106241 - MGP_AJ_P0072156 Tec protein_coding protein_coding MGP_AJ_T0072157.1 MGP_AJ_G0029585.1 mouse_genomes_project 5 69991882 70106178 - MGP_AJ_P0072157 Tec protein_coding nonsense_mediated_decay MGP_AJ_T0072158.1 MGP_AJ_G0029585.1 mouse_genomes_project 5 69991886 70106228 - MGP_AJ_P0072158 Tec protein_coding protein_coding MGP_AJ_T0072159.1 MGP_AJ_G0029585.1 mouse_genomes_project 5 69991886 70106265 - MGP_AJ_P0072159 Tec protein_coding nonsense_mediated_decay MGP_AJ_T0072160.1 MGP_AJ_G0029585.1 mouse_genomes_project 5 69991886 70022173 - MGP_AJ_P0072160 Tec protein_coding nonsense_mediated_decay MGP_AJ_T0072161.1 MGP_AJ_G0029585.1 mouse_genomes_project 5 70009399 70106231 - MGP_AJ_P0072161 Tec protein_coding nonsense_mediated_decay MGP_AJ_T0072162.1 MGP_AJ_G0029585.1 mouse_genomes_project 5 70060006 70106225 - Tec protein_coding retained_intron MGP_AJ_T0072163.1 MGP_AJ_G0029585.1 mouse_genomes_project 5 70060310 70081213 - MGP_AJ_P0072163 Tec protein_coding protein_coding MGP_AJ_T0072557.1 MGP_AJ_G0029668.1 mouse_genomes_project 5 85481548 85482512 - MGP_AJ_P0072557 Gm11116 protein_coding protein_coding MGP_AJ_T0071639.1 MGP_AJ_G0029499.1 mouse_genomes_project 5 42600006 42618338 - MGP_AJ_P0071639 Qdpr protein_coding protein_coding MGP_AJ_T0071640.1 MGP_AJ_G0029499.1 mouse_genomes_project 5 42600013 42618283 - MGP_AJ_P0071640 Qdpr protein_coding protein_coding MGP_AJ_T0071641.1 MGP_AJ_G0029499.1 mouse_genomes_project 5 42600038 42618333 - MGP_AJ_P0071641 Qdpr protein_coding protein_coding MGP_AJ_T0071642.1 MGP_AJ_G0029499.1 mouse_genomes_project 5 42600038 42616335 - MGP_AJ_P0071642 Qdpr protein_coding protein_coding MGP_AJ_T0071643.1 MGP_AJ_G0029499.1 mouse_genomes_project 5 42600038 42618127 - MGP_AJ_P0071643 Qdpr protein_coding protein_coding MGP_AJ_T0071644.1 MGP_AJ_G0029499.1 mouse_genomes_project 5 42600038 42618394 - MGP_AJ_P0071644 Qdpr protein_coding protein_coding MGP_AJ_T0071645.1 MGP_AJ_G0029499.1 mouse_genomes_project 5 42600130 42611730 - Qdpr protein_coding retained_intron MGP_AJ_T0071646.1 MGP_AJ_G0029499.1 mouse_genomes_project 5 42601114 42618445 - MGP_AJ_P0071646 Qdpr protein_coding unknown_likely_coding MGP_AJ_T0071647.1 MGP_AJ_G0029499.1 mouse_genomes_project 5 42602684 42612721 - Qdpr protein_coding processed_transcript MGP_AJ_T0071648.1 MGP_AJ_G0029499.1 mouse_genomes_project 5 42607526 42618316 - MGP_AJ_P0071648 Qdpr protein_coding protein_coding MGP_AJ_T0071649.1 MGP_AJ_G0029499.1 mouse_genomes_project 5 42611693 42618300 - MGP_AJ_P0071649 Qdpr protein_coding protein_coding MGP_AJ_T0071070.1 MGP_AJ_G0029404.1 mouse_genomes_project 5 29902534 29924136 - protein_coding retained_intron MGP_AJ_T0075840.1 MGP_AJ_G0030318.1 mouse_genomes_project 5 143175450 143274069 - MGP_AJ_P0075840 Baiap2l1 protein_coding protein_coding MGP_AJ_T0075841.1 MGP_AJ_G0030318.1 mouse_genomes_project 5 143194196 143201108 - Baiap2l1 protein_coding processed_transcript MGP_AJ_T0015066.1 MGP_AJ_G0013161.1 mouse_genomes_project 5 88214848 88215162 + processed_pseudogene processed_pseudogene MGP_AJ_T0070589.1 MGP_AJ_G0029321.1 mouse_genomes_project 5 21731436 21731752 - Crygn protein_coding processed_transcript MGP_AJ_T0070590.1 MGP_AJ_G0029321.1 mouse_genomes_project 5 21731436 21738522 - MGP_AJ_P0070590 Crygn protein_coding protein_coding MGP_AJ_T0074062.1 MGP_AJ_G0029994.1 mouse_genomes_project 5 119842344 119846511 - MGP_AJ_P0074062 Adam1b protein_coding protein_coding MGP_AJ_T0015190.1 MGP_AJ_G0013285.1 mouse_genomes_project 5 142405080 142405617 + processed_pseudogene processed_pseudogene MGP_AJ_T0001593.1 MGP_AJ_G0001510.1 mouse_genomes_project 5 49074584 49078434 - TEC TEC MGP_AJ_T0014870.1 MGP_AJ_G0012965.1 mouse_genomes_project 5 13438443 13439462 - processed_pseudogene processed_pseudogene MGP_AJ_T0074445.1 MGP_AJ_G0030051.1 mouse_genomes_project 5 122475148 122503105 - MGP_AJ_P0074445 Vps37b protein_coding protein_coding MGP_AJ_T0074446.1 MGP_AJ_G0030051.1 mouse_genomes_project 5 122476645 122482208 - Vps37b protein_coding processed_transcript MGP_AJ_T0074447.1 MGP_AJ_G0030051.1 mouse_genomes_project 5 122498600 122503093 - Vps37b protein_coding processed_transcript MGP_AJ_T0071855.1 MGP_AJ_G0029535.1 mouse_genomes_project 5 62006090 62036800 + MGP_AJ_P0071855 Klf3 protein_coding protein_coding MGP_AJ_T0071856.1 MGP_AJ_G0029535.1 mouse_genomes_project 5 62006279 62026544 + Klf3 protein_coding retained_intron MGP_AJ_T0071857.1 MGP_AJ_G0029535.1 mouse_genomes_project 5 62006324 62025607 + Klf3 protein_coding processed_transcript MGP_AJ_T0071858.1 MGP_AJ_G0029535.1 mouse_genomes_project 5 62015800 62033379 + MGP_AJ_P0071858 Klf3 protein_coding protein_coding MGP_AJ_T0071859.1 MGP_AJ_G0029535.1 mouse_genomes_project 5 62015801 62022762 + Klf3 protein_coding retained_intron MGP_AJ_T0071860.1 MGP_AJ_G0029535.1 mouse_genomes_project 5 62015845 62025678 + MGP_AJ_P0071860 Klf3 protein_coding protein_coding MGP_AJ_T0071861.1 MGP_AJ_G0029535.1 mouse_genomes_project 5 62019304 62029343 + Klf3 protein_coding retained_intron MGP_AJ_T0071862.1 MGP_AJ_G0029535.1 mouse_genomes_project 5 62025782 62031062 + MGP_AJ_P0071862 Klf3 protein_coding nonsense_mediated_decay MGP_AJ_T0071863.1 MGP_AJ_G0029535.1 mouse_genomes_project 5 62030722 62033447 + MGP_AJ_P0071863 Klf3 protein_coding protein_coding MGP_AJ_T0070903.1 MGP_AJ_G0029381.1 mouse_genomes_project 5 28216719 28222628 - MGP_AJ_P0070903 Eif2b4 protein_coding protein_coding MGP_AJ_T0070904.1 MGP_AJ_G0029381.1 mouse_genomes_project 5 28216720 28222337 - MGP_AJ_P0070904 Eif2b4 protein_coding protein_coding MGP_AJ_T0070905.1 MGP_AJ_G0029381.1 mouse_genomes_project 5 28216728 28222206 - MGP_AJ_P0070905 Eif2b4 protein_coding protein_coding MGP_AJ_T0070906.1 MGP_AJ_G0029381.1 mouse_genomes_project 5 28216729 28222212 - MGP_AJ_P0070906 Eif2b4 protein_coding protein_coding MGP_AJ_T0070907.1 MGP_AJ_G0029381.1 mouse_genomes_project 5 28216730 28220838 - MGP_AJ_P0070907 Eif2b4 protein_coding protein_coding MGP_AJ_T0070908.1 MGP_AJ_G0029381.1 mouse_genomes_project 5 28218592 28220052 - Eif2b4 protein_coding retained_intron MGP_AJ_T0070909.1 MGP_AJ_G0029381.1 mouse_genomes_project 5 28218759 28219107 - MGP_AJ_P0070909 Eif2b4 protein_coding protein_coding MGP_AJ_T0070910.1 MGP_AJ_G0029381.1 mouse_genomes_project 5 28218779 28220342 - MGP_AJ_P0070910 Eif2b4 protein_coding protein_coding MGP_AJ_T0070911.1 MGP_AJ_G0029381.1 mouse_genomes_project 5 28219588 28220390 - MGP_AJ_P0070911 Eif2b4 protein_coding protein_coding MGP_AJ_T0070912.1 MGP_AJ_G0029381.1 mouse_genomes_project 5 28220390 28222337 - Eif2b4 protein_coding processed_transcript MGP_AJ_T0070913.1 MGP_AJ_G0029381.1 mouse_genomes_project 5 28220520 28222197 - Eif2b4 protein_coding retained_intron MGP_AJ_T0070914.1 MGP_AJ_G0029381.1 mouse_genomes_project 5 28220908 28222616 - MGP_AJ_P0070914 Eif2b4 protein_coding protein_coding MGP_AJ_T0008468.1 MGP_AJ_G0006866.1 mouse_genomes_project 5 148331896 148333270 + Gm42787 lincRNA lincRNA MGP_AJ_T0071342.1 MGP_AJ_G0029443.1 mouse_genomes_project 5 32270703 32284978 - MGP_AJ_P0071342 Lrpap1 protein_coding protein_coding MGP_AJ_T0071343.1 MGP_AJ_G0029443.1 mouse_genomes_project 5 32272271 32281727 - MGP_AJ_P0071343 Lrpap1 protein_coding protein_coding MGP_AJ_T0071344.1 MGP_AJ_G0029443.1 mouse_genomes_project 5 32272497 32284901 - Lrpap1 protein_coding retained_intron MGP_AJ_T0071345.1 MGP_AJ_G0029443.1 mouse_genomes_project 5 32281340 32284908 - Lrpap1 protein_coding retained_intron MGP_AJ_T0071346.1 MGP_AJ_G0029443.1 mouse_genomes_project 5 32281721 32283753 - Lrpap1 protein_coding processed_transcript MGP_AJ_T0008215.1 MGP_AJ_G0006694.1 mouse_genomes_project 5 94492641 94496081 + 1700016F12Rik lincRNA lincRNA MGP_AJ_T0072567.1 MGP_AJ_G0029675.1 mouse_genomes_project 5 86006072 86007701 + MGP_AJ_P0072567 Utp3 protein_coding protein_coding MGP_AJ_T0008244.1 MGP_AJ_G0006715.1 mouse_genomes_project 5 99411616 99418277 - Gm43271 lincRNA lincRNA MGP_AJ_T0072861.1 MGP_AJ_G0029746.1 mouse_genomes_project 5 97633057 97660422 - MGP_AJ_P0072861 Hnrnpd protein_coding protein_coding MGP_AJ_T0072862.1 MGP_AJ_G0029746.1 mouse_genomes_project 5 97641468 97660421 - MGP_AJ_P0072862 Hnrnpd protein_coding protein_coding MGP_AJ_T0072863.1 MGP_AJ_G0029746.1 mouse_genomes_project 5 97641868 97660401 - MGP_AJ_P0072863 Hnrnpd protein_coding protein_coding MGP_AJ_T0072864.1 MGP_AJ_G0029746.1 mouse_genomes_project 5 97641872 97660419 - MGP_AJ_P0072864 Hnrnpd protein_coding protein_coding MGP_AJ_T0072865.1 MGP_AJ_G0029746.1 mouse_genomes_project 5 97641873 97657405 - MGP_AJ_P0072865 Hnrnpd protein_coding nonsense_mediated_decay MGP_AJ_T0072866.1 MGP_AJ_G0029746.1 mouse_genomes_project 5 97642021 97647045 - MGP_AJ_P0072866 Hnrnpd protein_coding nonsense_mediated_decay MGP_AJ_T0072867.1 MGP_AJ_G0029746.1 mouse_genomes_project 5 97642038 97645621 - MGP_AJ_P0072867 Hnrnpd protein_coding nonsense_mediated_decay MGP_AJ_T0072868.1 MGP_AJ_G0029746.1 mouse_genomes_project 5 97643153 97660108 - MGP_AJ_P0072868 Hnrnpd protein_coding nonsense_mediated_decay MGP_AJ_T0072869.1 MGP_AJ_G0029746.1 mouse_genomes_project 5 97645613 97647258 - Hnrnpd protein_coding retained_intron MGP_AJ_T0072870.1 MGP_AJ_G0029746.1 mouse_genomes_project 5 97646897 97660418 - MGP_AJ_P0072870 Hnrnpd protein_coding protein_coding MGP_AJ_T0072871.1 MGP_AJ_G0029746.1 mouse_genomes_project 5 97648178 97660343 - MGP_AJ_P0072871 Hnrnpd protein_coding protein_coding MGP_AJ_T0015116.1 MGP_AJ_G0013211.1 mouse_genomes_project 5 107445686 107446270 + processed_pseudogene processed_pseudogene MGP_AJ_T0014858.1 MGP_AJ_G0012953.1 mouse_genomes_project 5 6816960 6817705 + processed_pseudogene processed_pseudogene MGP_AJ_T0008180.1 MGP_AJ_G0006664.1 mouse_genomes_project 5 72200139 72220746 + Gm6116 lincRNA lincRNA MGP_AJ_T0001487.1 MGP_AJ_G0001407.1 mouse_genomes_project 5 26979293 26983294 - TEC TEC MGP_AJ_T0074917.1 MGP_AJ_G0030130.1 mouse_genomes_project 5 133177195 133210659 - MGP_AJ_P0074917 Limk1 protein_coding protein_coding MGP_AJ_T0074918.1 MGP_AJ_G0030130.1 mouse_genomes_project 5 133177196 133200297 - MGP_AJ_P0074918 Limk1 protein_coding protein_coding MGP_AJ_T0074919.1 MGP_AJ_G0030130.1 mouse_genomes_project 5 133177355 133200269 - MGP_AJ_P0074919 Limk1 protein_coding nonsense_mediated_decay MGP_AJ_T0074920.1 MGP_AJ_G0030130.1 mouse_genomes_project 5 133181151 133185145 - MGP_AJ_P0074920 Limk1 protein_coding protein_coding MGP_AJ_T0074921.1 MGP_AJ_G0030130.1 mouse_genomes_project 5 133184883 133189368 - Limk1 protein_coding retained_intron MGP_AJ_T0074922.1 MGP_AJ_G0030130.1 mouse_genomes_project 5 133189121 133210635 - Limk1 protein_coding retained_intron MGP_AJ_T0072267.1 MGP_AJ_G0029605.1 mouse_genomes_project 5 72417984 72449000 + MGP_AJ_P0072267 Pdgfra protein_coding protein_coding MGP_AJ_T0072268.1 MGP_AJ_G0029605.1 mouse_genomes_project 5 72417998 72463684 + MGP_AJ_P0072268 Pdgfra protein_coding protein_coding MGP_AJ_T0072269.1 MGP_AJ_G0029605.1 mouse_genomes_project 5 72418044 72440641 + MGP_AJ_P0072269 Pdgfra protein_coding non_stop_decay MGP_AJ_T0072270.1 MGP_AJ_G0029605.1 mouse_genomes_project 5 72418627 72449614 + MGP_AJ_P0072270 Pdgfra protein_coding protein_coding MGP_AJ_T0072271.1 MGP_AJ_G0029605.1 mouse_genomes_project 5 72419278 72428207 + Pdgfra protein_coding retained_intron MGP_AJ_T0072272.1 MGP_AJ_G0029605.1 mouse_genomes_project 5 72420766 72429236 + MGP_AJ_P0072272 Pdgfra protein_coding protein_coding MGP_AJ_T0072273.1 MGP_AJ_G0029605.1 mouse_genomes_project 5 72421520 72463670 + MGP_AJ_P0072273 Pdgfra protein_coding protein_coding MGP_AJ_T0072274.1 MGP_AJ_G0029605.1 mouse_genomes_project 5 72422450 72432053 + MGP_AJ_P0072274 Pdgfra protein_coding protein_coding MGP_AJ_T0072275.1 MGP_AJ_G0029605.1 mouse_genomes_project 5 72427320 72433430 + MGP_AJ_P0072275 Pdgfra protein_coding protein_coding MGP_AJ_T0001748.1 MGP_AJ_G0001663.1 mouse_genomes_project 5 105643706 105645052 - TEC TEC MGP_AJ_T0071829.1 MGP_AJ_G0029529.1 mouse_genomes_project 5 59986421 60058726 + MGP_AJ_P0071829 Dthd1 protein_coding protein_coding MGP_AJ_T0015175.1 MGP_AJ_G0013270.1 mouse_genomes_project 5 137091706 137091910 + processed_pseudogene processed_pseudogene MGP_AJ_T0099047.1 MGP_AJ_G0037024.1 mouse_genomes_project 5 97180079 97180818 - Gm16227 sense_intronic sense_intronic MGP_AJ_T0072233.1 MGP_AJ_G0029600.1 mouse_genomes_project 5 71463021 71788192 - MGP_AJ_P0072233 Scfd2 protein_coding protein_coding MGP_AJ_T0072234.1 MGP_AJ_G0029600.1 mouse_genomes_project 5 71464203 71483610 - Scfd2 protein_coding retained_intron MGP_AJ_T0072235.1 MGP_AJ_G0029600.1 mouse_genomes_project 5 71464206 71788195 - MGP_AJ_P0072235 Scfd2 protein_coding protein_coding MGP_AJ_T0072236.1 MGP_AJ_G0029600.1 mouse_genomes_project 5 71652198 71654800 - MGP_AJ_P0072236 Scfd2 protein_coding protein_coding MGP_AJ_T0072237.1 MGP_AJ_G0029600.1 mouse_genomes_project 5 71705388 71788172 - MGP_AJ_P0072237 Scfd2 protein_coding nonsense_mediated_decay MGP_AJ_T0072238.1 MGP_AJ_G0029600.1 mouse_genomes_project 5 71713866 71788202 - MGP_AJ_P0072238 Scfd2 protein_coding protein_coding MGP_AJ_T0072239.1 MGP_AJ_G0029600.1 mouse_genomes_project 5 71715979 71737225 - Scfd2 protein_coding retained_intron MGP_AJ_T0072240.1 MGP_AJ_G0029600.1 mouse_genomes_project 5 71771603 71788185 - Scfd2 protein_coding processed_transcript MGP_AJ_T0008231.1 MGP_AJ_G0006707.1 mouse_genomes_project 5 97405563 97428678 - Gm43248 lincRNA lincRNA MGP_AJ_T0008232.1 MGP_AJ_G0006707.1 mouse_genomes_project 5 97417134 97428216 - Gm43248 lincRNA lincRNA MGP_AJ_T0008319.1 MGP_AJ_G0006762.1 mouse_genomes_project 5 113466598 113484294 + Gm13830 lincRNA lincRNA MGP_AJ_T0008320.1 MGP_AJ_G0006762.1 mouse_genomes_project 5 113466614 113467781 + Gm13830 lincRNA lincRNA MGP_AJ_T0008321.1 MGP_AJ_G0006762.1 mouse_genomes_project 5 113466615 113482669 + Gm13830 lincRNA lincRNA MGP_AJ_T0008322.1 MGP_AJ_G0006762.1 mouse_genomes_project 5 113466625 113467814 + Gm13830 lincRNA lincRNA MGP_AJ_T0008323.1 MGP_AJ_G0006762.1 mouse_genomes_project 5 113466685 113467215 + Gm13830 lincRNA lincRNA MGP_AJ_T0101829.1 MGP_AJ_G0039731.1 mouse_genomes_project 5 83338225 83339225 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0101830.1 MGP_AJ_G0039731.1 mouse_genomes_project 5 83338280 83339364 + transcribed_processed_pseudogene processed_transcript MGP_AJ_T0070288.1 MGP_AJ_G0029261.1 mouse_genomes_project 5 11387378 11737888 + MGP_AJ_P0070288 protein_coding protein_coding MGP_AJ_T0070289.1 MGP_AJ_G0029261.1 mouse_genomes_project 5 11387378 11671743 + MGP_AJ_P0070289 protein_coding protein_coding MGP_AJ_T0070290.1 MGP_AJ_G0029261.1 mouse_genomes_project 5 11387453 11734586 + protein_coding retained_intron MGP_AJ_T0070291.1 MGP_AJ_G0029261.1 mouse_genomes_project 5 11551219 11671754 + MGP_AJ_P0070291 protein_coding protein_coding MGP_AJ_T0075027.1 MGP_AJ_G0030154.1 mouse_genomes_project 5 134183702 134197446 + MGP_AJ_P0075027 Rhbdd2 protein_coding protein_coding MGP_AJ_T0075028.1 MGP_AJ_G0030154.1 mouse_genomes_project 5 134183738 134197518 + MGP_AJ_P0075028 Rhbdd2 protein_coding nonsense_mediated_decay MGP_AJ_T0075029.1 MGP_AJ_G0030154.1 mouse_genomes_project 5 134183788 134188697 + Rhbdd2 protein_coding processed_transcript MGP_AJ_T0075030.1 MGP_AJ_G0030154.1 mouse_genomes_project 5 134183800 134186700 + Rhbdd2 protein_coding retained_intron MGP_AJ_T0075031.1 MGP_AJ_G0030154.1 mouse_genomes_project 5 134183807 134187630 + Rhbdd2 protein_coding retained_intron MGP_AJ_T0075032.1 MGP_AJ_G0030154.1 mouse_genomes_project 5 134186186 134191386 + MGP_AJ_P0075032 Rhbdd2 protein_coding nonsense_mediated_decay MGP_AJ_T0075033.1 MGP_AJ_G0030154.1 mouse_genomes_project 5 134187616 134195597 + Rhbdd2 protein_coding retained_intron MGP_AJ_T0008057.1 MGP_AJ_G0006578.1 mouse_genomes_project 5 19342222 19346057 - Gm43657 lincRNA lincRNA MGP_AJ_T0001509.1 MGP_AJ_G0001427.1 mouse_genomes_project 5 31734286 31734755 + TEC TEC MGP_AJ_T0073211.1 MGP_AJ_G0029820.1 mouse_genomes_project 5 106304595 106312427 - MGP_AJ_P0073211 Mfsd7a protein_coding protein_coding MGP_AJ_T0072601.1 MGP_AJ_G0029684.1 mouse_genomes_project 5 87668549 87677820 - MGP_AJ_P0072601 Cox18 protein_coding protein_coding MGP_AJ_T0072602.1 MGP_AJ_G0029684.1 mouse_genomes_project 5 87668549 87677791 - MGP_AJ_P0072602 Cox18 protein_coding protein_coding MGP_AJ_T0072603.1 MGP_AJ_G0029684.1 mouse_genomes_project 5 87668552 87669407 - Cox18 protein_coding processed_transcript MGP_AJ_T0072604.1 MGP_AJ_G0029684.1 mouse_genomes_project 5 87668552 87671698 - Cox18 protein_coding retained_intron MGP_AJ_T0072605.1 MGP_AJ_G0029684.1 mouse_genomes_project 5 87668555 87669848 - Cox18 protein_coding retained_intron MGP_AJ_T0072606.1 MGP_AJ_G0029684.1 mouse_genomes_project 5 87671352 87673610 - Cox18 protein_coding retained_intron MGP_AJ_T0072607.1 MGP_AJ_G0029684.1 mouse_genomes_project 5 87672753 87677758 - MGP_AJ_P0072607 Cox18 protein_coding nonsense_mediated_decay MGP_AJ_T0015009.1 MGP_AJ_G0013104.1 mouse_genomes_project 5 63440444 63443975 - processed_pseudogene processed_pseudogene MGP_AJ_T0075043.1 MGP_AJ_G0030156.1 mouse_genomes_project 5 134290692 134300468 - MGP_AJ_P0075043 Tmem120a protein_coding protein_coding MGP_AJ_T0075044.1 MGP_AJ_G0030156.1 mouse_genomes_project 5 134290711 134291798 - Tmem120a protein_coding retained_intron MGP_AJ_T0075045.1 MGP_AJ_G0030156.1 mouse_genomes_project 5 134290745 134292444 - Tmem120a protein_coding processed_transcript MGP_AJ_T0075046.1 MGP_AJ_G0030156.1 mouse_genomes_project 5 134291462 134298419 - Tmem120a protein_coding retained_intron MGP_AJ_T0075047.1 MGP_AJ_G0030156.1 mouse_genomes_project 5 134292415 134300228 - MGP_AJ_P0075047 Tmem120a protein_coding protein_coding MGP_AJ_T0001547.1 MGP_AJ_G0001465.1 mouse_genomes_project 5 42845002 42846009 - TEC TEC MGP_AJ_T0070892.1 MGP_AJ_G0029380.1 mouse_genomes_project 5 28184575 28208950 - Gtf3c2 protein_coding retained_intron MGP_AJ_T0070893.1 MGP_AJ_G0029380.1 mouse_genomes_project 5 28184575 28208962 - MGP_AJ_P0070893 Gtf3c2 protein_coding protein_coding MGP_AJ_T0070894.1 MGP_AJ_G0029380.1 mouse_genomes_project 5 28185091 28208935 - MGP_AJ_P0070894 Gtf3c2 protein_coding protein_coding MGP_AJ_T0070895.1 MGP_AJ_G0029380.1 mouse_genomes_project 5 28186014 28187952 - Gtf3c2 protein_coding retained_intron MGP_AJ_T0070896.1 MGP_AJ_G0029380.1 mouse_genomes_project 5 28188066 28194808 - Gtf3c2 protein_coding retained_intron MGP_AJ_T0070897.1 MGP_AJ_G0029380.1 mouse_genomes_project 5 28195806 28208727 - Gtf3c2 protein_coding retained_intron MGP_AJ_T0070898.1 MGP_AJ_G0029380.1 mouse_genomes_project 5 28201397 28208729 - Gtf3c2 protein_coding retained_intron MGP_AJ_T0070899.1 MGP_AJ_G0029380.1 mouse_genomes_project 5 28201717 28203205 - MGP_AJ_P0070899 Gtf3c2 protein_coding protein_coding MGP_AJ_T0070900.1 MGP_AJ_G0029380.1 mouse_genomes_project 5 28202094 28208729 - MGP_AJ_P0070900 Gtf3c2 protein_coding protein_coding MGP_AJ_T0070901.1 MGP_AJ_G0029380.1 mouse_genomes_project 5 28202507 28208667 - MGP_AJ_P0070901 Gtf3c2 protein_coding protein_coding MGP_AJ_T0070902.1 MGP_AJ_G0029380.1 mouse_genomes_project 5 28202624 28203525 - MGP_AJ_P0070902 Gtf3c2 protein_coding protein_coding MGP_AJ_T0014896.1 MGP_AJ_G0012991.1 mouse_genomes_project 5 19864222 19864841 - processed_pseudogene processed_pseudogene MGP_AJ_T0001798.1 MGP_AJ_G0001713.1 mouse_genomes_project 5 119519032 119522300 - TEC TEC MGP_AJ_T0008324.1 MGP_AJ_G0006763.1 mouse_genomes_project 5 113514613 113518521 + Gm42903 lincRNA lincRNA MGP_AJ_T0075498.1 MGP_AJ_G0030246.1 mouse_genomes_project 5 138053654 138101975 + MGP_AJ_P0075498 Sun1 protein_coding protein_coding MGP_AJ_T0075499.1 MGP_AJ_G0030246.1 mouse_genomes_project 5 138053660 138101930 + MGP_AJ_P0075499 Sun1 protein_coding protein_coding MGP_AJ_T0075500.1 MGP_AJ_G0030246.1 mouse_genomes_project 5 138053677 138101930 + MGP_AJ_P0075500 Sun1 protein_coding protein_coding MGP_AJ_T0075501.1 MGP_AJ_G0030246.1 mouse_genomes_project 5 138053684 138080474 + Sun1 protein_coding retained_intron MGP_AJ_T0075502.1 MGP_AJ_G0030246.1 mouse_genomes_project 5 138053684 138080475 + MGP_AJ_P0075502 Sun1 protein_coding protein_coding MGP_AJ_T0075503.1 MGP_AJ_G0030246.1 mouse_genomes_project 5 138053686 138075874 + MGP_AJ_P0075503 Sun1 protein_coding protein_coding MGP_AJ_T0075504.1 MGP_AJ_G0030246.1 mouse_genomes_project 5 138053688 138078733 + MGP_AJ_P0075504 Sun1 protein_coding protein_coding MGP_AJ_T0075505.1 MGP_AJ_G0030246.1 mouse_genomes_project 5 138053692 138068741 + Sun1 protein_coding retained_intron MGP_AJ_T0075506.1 MGP_AJ_G0030246.1 mouse_genomes_project 5 138053697 138100684 + MGP_AJ_P0075506 Sun1 protein_coding protein_coding MGP_AJ_T0075507.1 MGP_AJ_G0030246.1 mouse_genomes_project 5 138053702 138078739 + MGP_AJ_P0075507 Sun1 protein_coding protein_coding MGP_AJ_T0075508.1 MGP_AJ_G0030246.1 mouse_genomes_project 5 138064909 138065257 + Sun1 protein_coding processed_transcript MGP_AJ_T0075509.1 MGP_AJ_G0030246.1 mouse_genomes_project 5 138064941 138077532 + MGP_AJ_P0075509 Sun1 protein_coding protein_coding MGP_AJ_T0075510.1 MGP_AJ_G0030246.1 mouse_genomes_project 5 138064995 138100778 + MGP_AJ_P0075510 Sun1 protein_coding protein_coding MGP_AJ_T0075511.1 MGP_AJ_G0030246.1 mouse_genomes_project 5 138065235 138077496 + MGP_AJ_P0075511 Sun1 protein_coding protein_coding MGP_AJ_T0075512.1 MGP_AJ_G0030246.1 mouse_genomes_project 5 138075812 138082967 + Sun1 protein_coding processed_transcript MGP_AJ_T0075513.1 MGP_AJ_G0030246.1 mouse_genomes_project 5 138077410 138082074 + MGP_AJ_P0075513 Sun1 protein_coding protein_coding MGP_AJ_T0075514.1 MGP_AJ_G0030246.1 mouse_genomes_project 5 138078877 138087760 + MGP_AJ_P0075514 Sun1 protein_coding protein_coding MGP_AJ_T0075515.1 MGP_AJ_G0030246.1 mouse_genomes_project 5 138083238 138086678 + Sun1 protein_coding retained_intron MGP_AJ_T0075516.1 MGP_AJ_G0030246.1 mouse_genomes_project 5 138087711 138097502 + MGP_AJ_P0075516 Sun1 protein_coding protein_coding MGP_AJ_T0075517.1 MGP_AJ_G0030246.1 mouse_genomes_project 5 138093488 138100641 + MGP_AJ_P0075517 Sun1 protein_coding nonsense_mediated_decay MGP_AJ_T0008126.1 MGP_AJ_G0006620.1 mouse_genomes_project 5 40519295 40521473 - Gm43020 lincRNA lincRNA MGP_AJ_T0099050.1 MGP_AJ_G0037027.1 mouse_genomes_project 5 108283521 108284229 + Gm43138 sense_intronic sense_intronic MGP_AJ_T0073372.1 MGP_AJ_G0029857.1 mouse_genomes_project 5 108754138 108861235 - MGP_AJ_P0073372 Ep400 protein_coding protein_coding MGP_AJ_T0073373.1 MGP_AJ_G0029857.1 mouse_genomes_project 5 108754138 108861425 - MGP_AJ_P0073373 Ep400 protein_coding protein_coding MGP_AJ_T0073374.1 MGP_AJ_G0029857.1 mouse_genomes_project 5 108754143 108861425 - MGP_AJ_P0073374 Ep400 protein_coding protein_coding MGP_AJ_T0073375.1 MGP_AJ_G0029857.1 mouse_genomes_project 5 108757135 108757954 - Ep400 protein_coding processed_transcript MGP_AJ_T0073376.1 MGP_AJ_G0029857.1 mouse_genomes_project 5 108757299 108758573 - Ep400 protein_coding retained_intron MGP_AJ_T0073377.1 MGP_AJ_G0029857.1 mouse_genomes_project 5 108777651 108781897 - Ep400 protein_coding retained_intron MGP_AJ_T0073378.1 MGP_AJ_G0029857.1 mouse_genomes_project 5 108785690 108788862 - Ep400 protein_coding retained_intron MGP_AJ_T0073379.1 MGP_AJ_G0029857.1 mouse_genomes_project 5 108787069 108797671 - MGP_AJ_P0073379 Ep400 protein_coding protein_coding MGP_AJ_T0073380.1 MGP_AJ_G0029857.1 mouse_genomes_project 5 108828475 108861293 - MGP_AJ_P0073380 Ep400 protein_coding protein_coding MGP_AJ_T0073381.1 MGP_AJ_G0029857.1 mouse_genomes_project 5 108828873 108860863 - MGP_AJ_P0073381 Ep400 protein_coding protein_coding MGP_AJ_T0073382.1 MGP_AJ_G0029857.1 mouse_genomes_project 5 108847227 108861425 - Ep400 protein_coding processed_transcript MGP_AJ_T0071347.1 MGP_AJ_G0029444.1 mouse_genomes_project 5 32460343 32463789 + MGP_AJ_P0071347 Adra2c protein_coding protein_coding MGP_AJ_T0018132.1 MGP_AJ_G0015570.1 mouse_genomes_project 5 28670415 28775961 + Gm43809 processed_transcript processed_transcript MGP_AJ_T0018133.1 MGP_AJ_G0015570.1 mouse_genomes_project 5 28687955 28775941 + Gm43809 processed_transcript processed_transcript MGP_AJ_T0001813.1 MGP_AJ_G0001728.1 mouse_genomes_project 5 121456780 121461911 + TEC TEC MGP_AJ_T0073580.1 MGP_AJ_G0029898.1 mouse_genomes_project 5 112276819 112383377 + MGP_AJ_P0073580 Acacb protein_coding protein_coding MGP_AJ_T0073581.1 MGP_AJ_G0029898.1 mouse_genomes_project 5 112295852 112383371 + MGP_AJ_P0073581 Acacb protein_coding protein_coding MGP_AJ_T0073582.1 MGP_AJ_G0029898.1 mouse_genomes_project 5 112306131 112321043 + MGP_AJ_P0073582 Acacb protein_coding protein_coding MGP_AJ_T0073583.1 MGP_AJ_G0029898.1 mouse_genomes_project 5 112330488 112383375 + Acacb protein_coding retained_intron MGP_AJ_T0073584.1 MGP_AJ_G0029898.1 mouse_genomes_project 5 112380951 112381577 + Acacb protein_coding retained_intron MGP_AJ_T0001607.1 MGP_AJ_G0001524.1 mouse_genomes_project 5 54962877 54965055 + TEC TEC MGP_AJ_T0008355.1 MGP_AJ_G0006788.1 mouse_genomes_project 5 118136647 118138504 + Gm43269 lincRNA lincRNA MGP_AJ_T0008213.1 MGP_AJ_G0006692.1 mouse_genomes_project 5 89500641 89513236 + Gm26582 lincRNA lincRNA MGP_AJ_T0102636.1 MGP_AJ_G0040378.1 mouse_genomes_project 5 84369359 84370182 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0072189.1 MGP_AJ_G0029591.1 mouse_genomes_project 5 70543237 70564181 + MGP_AJ_P0072189 Ociad1 protein_coding protein_coding MGP_AJ_T0072190.1 MGP_AJ_G0029591.1 mouse_genomes_project 5 70543245 70564293 + MGP_AJ_P0072190 Ociad1 protein_coding protein_coding MGP_AJ_T0072191.1 MGP_AJ_G0029591.1 mouse_genomes_project 5 70543246 70559818 + MGP_AJ_P0072191 Ociad1 protein_coding protein_coding MGP_AJ_T0072192.1 MGP_AJ_G0029591.1 mouse_genomes_project 5 70543260 70557235 + MGP_AJ_P0072192 Ociad1 protein_coding protein_coding MGP_AJ_T0072193.1 MGP_AJ_G0029591.1 mouse_genomes_project 5 70543285 70564138 + MGP_AJ_P0072193 Ociad1 protein_coding protein_coding MGP_AJ_T0072194.1 MGP_AJ_G0029591.1 mouse_genomes_project 5 70543294 70560869 + MGP_AJ_P0072194 Ociad1 protein_coding protein_coding MGP_AJ_T0072195.1 MGP_AJ_G0029591.1 mouse_genomes_project 5 70543348 70564165 + MGP_AJ_P0072195 Ociad1 protein_coding protein_coding MGP_AJ_T0072196.1 MGP_AJ_G0029591.1 mouse_genomes_project 5 70543506 70545433 + MGP_AJ_P0072196 Ociad1 protein_coding protein_coding MGP_AJ_T0072197.1 MGP_AJ_G0029591.1 mouse_genomes_project 5 70545456 70564165 + MGP_AJ_P0072197 Ociad1 protein_coding nonsense_mediated_decay MGP_AJ_T0072198.1 MGP_AJ_G0029591.1 mouse_genomes_project 5 70554577 70555610 + Ociad1 protein_coding retained_intron MGP_AJ_T0004713.1 MGP_AJ_G0004076.1 mouse_genomes_project 5 65110372 65177151 + Gm15477 antisense antisense MGP_AJ_T0004714.1 MGP_AJ_G0004076.1 mouse_genomes_project 5 65110442 65172615 + Gm15477 antisense antisense MGP_AJ_T0070660.1 MGP_AJ_G0029339.1 mouse_genomes_project 5 26193105 26200370 + MGP_AJ_P0070660 Rnf32 protein_coding protein_coding MGP_AJ_T0070661.1 MGP_AJ_G0029339.1 mouse_genomes_project 5 26193106 26228289 + MGP_AJ_P0070661 Rnf32 protein_coding nonsense_mediated_decay MGP_AJ_T0070662.1 MGP_AJ_G0029339.1 mouse_genomes_project 5 26193108 26195861 + MGP_AJ_P0070662 Rnf32 protein_coding protein_coding MGP_AJ_T0070663.1 MGP_AJ_G0029339.1 mouse_genomes_project 5 26193110 26228330 + MGP_AJ_P0070663 Rnf32 protein_coding protein_coding MGP_AJ_T0070664.1 MGP_AJ_G0029339.1 mouse_genomes_project 5 26193116 26200430 + MGP_AJ_P0070664 Rnf32 protein_coding protein_coding MGP_AJ_T0070665.1 MGP_AJ_G0029339.1 mouse_genomes_project 5 26193119 26228332 + MGP_AJ_P0070665 Rnf32 protein_coding protein_coding MGP_AJ_T0070666.1 MGP_AJ_G0029339.1 mouse_genomes_project 5 26193171 26204886 + Rnf32 protein_coding retained_intron MGP_AJ_T0070667.1 MGP_AJ_G0029339.1 mouse_genomes_project 5 26193197 26195105 + Rnf32 protein_coding processed_transcript MGP_AJ_T0070668.1 MGP_AJ_G0029339.1 mouse_genomes_project 5 26193700 26200319 + MGP_AJ_P0070668 Rnf32 protein_coding protein_coding MGP_AJ_T0070669.1 MGP_AJ_G0029339.1 mouse_genomes_project 5 26195119 26228099 + MGP_AJ_P0070669 Rnf32 protein_coding protein_coding MGP_AJ_T0070670.1 MGP_AJ_G0029339.1 mouse_genomes_project 5 26195784 26228109 + MGP_AJ_P0070670 Rnf32 protein_coding protein_coding MGP_AJ_T0070671.1 MGP_AJ_G0029339.1 mouse_genomes_project 5 26226593 26231265 + Rnf32 protein_coding retained_intron MGP_AJ_T0014994.1 MGP_AJ_G0013089.1 mouse_genomes_project 5 57192057 57192251 - processed_pseudogene processed_pseudogene MGP_AJ_T0073208.1 MGP_AJ_G0029819.1 mouse_genomes_project 5 106296779 106297984 - MGP_AJ_P0073208 Atp5k protein_coding protein_coding MGP_AJ_T0073209.1 MGP_AJ_G0029819.1 mouse_genomes_project 5 106296779 106297984 - MGP_AJ_P0073209 Atp5k protein_coding protein_coding MGP_AJ_T0073210.1 MGP_AJ_G0029819.1 mouse_genomes_project 5 106296781 106297933 - Atp5k protein_coding retained_intron MGP_AJ_T0075759.1 MGP_AJ_G0030301.1 mouse_genomes_project 5 142412760 142455148 + MGP_AJ_P0075759 Daglb protein_coding protein_coding MGP_AJ_T0075760.1 MGP_AJ_G0030301.1 mouse_genomes_project 5 142412789 142423654 + Daglb protein_coding retained_intron MGP_AJ_T0075761.1 MGP_AJ_G0030301.1 mouse_genomes_project 5 142421209 142426101 + Daglb protein_coding retained_intron MGP_AJ_T0075762.1 MGP_AJ_G0030301.1 mouse_genomes_project 5 142435901 142439218 + Daglb protein_coding retained_intron MGP_AJ_T0074931.1 MGP_AJ_G0030134.1 mouse_genomes_project 5 133455069 133464908 + MGP_AJ_P0074931 Wbscr27 protein_coding protein_coding MGP_AJ_T0074932.1 MGP_AJ_G0030134.1 mouse_genomes_project 5 133455074 133463994 + MGP_AJ_P0074932 Wbscr27 protein_coding protein_coding MGP_AJ_T0074933.1 MGP_AJ_G0030134.1 mouse_genomes_project 5 133455074 133463994 + MGP_AJ_P0074933 Wbscr27 protein_coding protein_coding MGP_AJ_T0074934.1 MGP_AJ_G0030134.1 mouse_genomes_project 5 133455086 133463994 + MGP_AJ_P0074934 Wbscr27 protein_coding protein_coding MGP_AJ_T0074935.1 MGP_AJ_G0030134.1 mouse_genomes_project 5 133455093 133463473 + MGP_AJ_P0074935 Wbscr27 protein_coding protein_coding MGP_AJ_T0074936.1 MGP_AJ_G0030134.1 mouse_genomes_project 5 133455107 133457126 + MGP_AJ_P0074936 Wbscr27 protein_coding protein_coding MGP_AJ_T0074937.1 MGP_AJ_G0030134.1 mouse_genomes_project 5 133455225 133462905 + MGP_AJ_P0074937 Wbscr27 protein_coding protein_coding MGP_AJ_T0074938.1 MGP_AJ_G0030134.1 mouse_genomes_project 5 133455485 133459976 + Wbscr27 protein_coding processed_transcript MGP_AJ_T0074939.1 MGP_AJ_G0030134.1 mouse_genomes_project 5 133462732 133463503 + MGP_AJ_P0074939 Wbscr27 protein_coding protein_coding MGP_AJ_T0015219.1 MGP_AJ_G0013314.1 mouse_genomes_project 5 149470677 149471065 + processed_pseudogene processed_pseudogene MGP_AJ_T0001877.1 MGP_AJ_G0001790.1 mouse_genomes_project 5 133032682 133034147 - TEC TEC MGP_AJ_T0073139.1 MGP_AJ_G0029807.1 mouse_genomes_project 5 105430737 105496372 + MGP_AJ_P0073139 Rpap2 protein_coding protein_coding MGP_AJ_T0073140.1 MGP_AJ_G0029807.1 mouse_genomes_project 5 105430758 105477538 + MGP_AJ_P0073140 Rpap2 protein_coding protein_coding MGP_AJ_T0073141.1 MGP_AJ_G0029807.1 mouse_genomes_project 5 105430762 105435021 + Rpap2 protein_coding processed_transcript MGP_AJ_T0073142.1 MGP_AJ_G0029807.1 mouse_genomes_project 5 105430770 105496376 + MGP_AJ_P0073142 Rpap2 protein_coding protein_coding MGP_AJ_T0073143.1 MGP_AJ_G0029807.1 mouse_genomes_project 5 105430815 105477538 + MGP_AJ_P0073143 Rpap2 protein_coding protein_coding MGP_AJ_T0073144.1 MGP_AJ_G0029807.1 mouse_genomes_project 5 105431002 105434849 + MGP_AJ_P0073144 Rpap2 protein_coding protein_coding MGP_AJ_T0073145.1 MGP_AJ_G0029807.1 mouse_genomes_project 5 105431023 105440052 + MGP_AJ_P0073145 Rpap2 protein_coding protein_coding MGP_AJ_T0072241.1 MGP_AJ_G0029601.1 mouse_genomes_project 5 71791892 71855041 + MGP_AJ_P0072241 Fip1l1 protein_coding protein_coding MGP_AJ_T0072242.1 MGP_AJ_G0029601.1 mouse_genomes_project 5 71791914 71855051 + MGP_AJ_P0072242 Fip1l1 protein_coding protein_coding MGP_AJ_T0072243.1 MGP_AJ_G0029601.1 mouse_genomes_project 5 71791922 71848681 + MGP_AJ_P0072243 Fip1l1 protein_coding protein_coding MGP_AJ_T0072244.1 MGP_AJ_G0029601.1 mouse_genomes_project 5 71791924 71852396 + MGP_AJ_P0072244 Fip1l1 protein_coding protein_coding MGP_AJ_T0072245.1 MGP_AJ_G0029601.1 mouse_genomes_project 5 71791927 71797012 + Fip1l1 protein_coding retained_intron MGP_AJ_T0072246.1 MGP_AJ_G0029601.1 mouse_genomes_project 5 71791946 71848063 + MGP_AJ_P0072246 Fip1l1 protein_coding protein_coding MGP_AJ_T0072247.1 MGP_AJ_G0029601.1 mouse_genomes_project 5 71792127 71841798 + Fip1l1 protein_coding retained_intron MGP_AJ_T0072248.1 MGP_AJ_G0029601.1 mouse_genomes_project 5 71792422 71801900 + Fip1l1 protein_coding processed_transcript MGP_AJ_T0072249.1 MGP_AJ_G0029601.1 mouse_genomes_project 5 71841103 71848163 + Fip1l1 protein_coding retained_intron MGP_AJ_T0072250.1 MGP_AJ_G0029601.1 mouse_genomes_project 5 71841148 71844588 + Fip1l1 protein_coding retained_intron MGP_AJ_T0072251.1 MGP_AJ_G0029601.1 mouse_genomes_project 5 71842495 71844783 + Fip1l1 protein_coding retained_intron MGP_AJ_T0072252.1 MGP_AJ_G0029601.1 mouse_genomes_project 5 71843169 71848253 + Fip1l1 protein_coding retained_intron MGP_AJ_T0072257.1 MGP_AJ_G0029601.1 mouse_genomes_project 5 71850970 71852181 + Fip1l1 protein_coding retained_intron MGP_AJ_T0071720.1 MGP_AJ_G0029509.1 mouse_genomes_project 5 47120251 47217869 - MGP_AJ_P0071720 Adgra3 protein_coding protein_coding MGP_AJ_T0071721.1 MGP_AJ_G0029509.1 mouse_genomes_project 5 47126403 47132368 - Adgra3 protein_coding processed_transcript MGP_AJ_T0071722.1 MGP_AJ_G0029509.1 mouse_genomes_project 5 47147852 47161591 - Adgra3 protein_coding processed_transcript MGP_AJ_T0071723.1 MGP_AJ_G0029509.1 mouse_genomes_project 5 47167155 47169739 - Adgra3 protein_coding retained_intron MGP_AJ_T0071724.1 MGP_AJ_G0029509.1 mouse_genomes_project 5 47209245 47212234 - Adgra3 protein_coding retained_intron MGP_AJ_T0071725.1 MGP_AJ_G0029509.1 mouse_genomes_project 5 47209725 47217508 - Adgra3 protein_coding processed_transcript MGP_AJ_T0071726.1 MGP_AJ_G0029509.1 mouse_genomes_project 5 47216986 47217508 - Adgra3 protein_coding retained_intron MGP_AJ_T0075560.1 MGP_AJ_G0030256.1 mouse_genomes_project 5 138408024 138412573 + MGP_AJ_P0075560 Uncx protein_coding protein_coding MGP_AJ_T0075561.1 MGP_AJ_G0030256.1 mouse_genomes_project 5 138408428 138409799 + MGP_AJ_P0075561 Uncx protein_coding protein_coding MGP_AJ_T0008066.1 MGP_AJ_G0006583.1 mouse_genomes_project 5 20374766 20408281 - lincRNA lincRNA MGP_AJ_T0008067.1 MGP_AJ_G0006583.1 mouse_genomes_project 5 20397367 20408254 - lincRNA lincRNA MGP_AJ_T0008068.1 MGP_AJ_G0006583.1 mouse_genomes_project 5 20406754 20408864 - lincRNA lincRNA MGP_AJ_T0008069.1 MGP_AJ_G0006583.1 mouse_genomes_project 5 20407231 20409214 - lincRNA lincRNA MGP_AJ_T0008056.1 MGP_AJ_G0006577.1 mouse_genomes_project 5 15411781 15420275 - Gm43030 lincRNA lincRNA MGP_AJ_T0001681.1 MGP_AJ_G0001597.1 mouse_genomes_project 5 69768854 69769844 - TEC TEC MGP_AJ_T0014940.1 MGP_AJ_G0013035.1 mouse_genomes_project 5 30930113 30930425 + processed_pseudogene processed_pseudogene MGP_AJ_T0100065.1 MGP_AJ_G0038031.1 mouse_genomes_project 5 142873915 142874019 + Gm24311 snRNA snRNA MGP_AJ_T0010692.1 MGP_AJ_G0008814.1 mouse_genomes_project 5 89939358 89939458 + Mir6415 miRNA miRNA MGP_AJ_T0008460.1 MGP_AJ_G0006861.1 mouse_genomes_project 5 148141160 148142576 + 8430423G03Rik lincRNA lincRNA MGP_AJ_T0004784.1 MGP_AJ_G0004129.1 mouse_genomes_project 5 113121127 113123707 + Hnf1aos2 antisense antisense MGP_AJ_T0008165.1 MGP_AJ_G0006653.1 mouse_genomes_project 5 61896563 61899623 - Gm26761 lincRNA lincRNA MGP_AJ_T0075317.1 MGP_AJ_G0030205.1 mouse_genomes_project 5 136194369 136208560 + MGP_AJ_P0075317 protein_coding nonsense_mediated_decay MGP_AJ_T0014881.1 MGP_AJ_G0012976.1 mouse_genomes_project 5 18063989 18065385 + processed_pseudogene processed_pseudogene MGP_AJ_T0099984.1 MGP_AJ_G0037950.1 mouse_genomes_project 5 3214099 3214192 + Gm24686 snRNA snRNA MGP_AJ_T0075341.1 MGP_AJ_G0030210.1 mouse_genomes_project 5 136318626 136344370 + MGP_AJ_P0075341 Tsc22d4 protein_coding protein_coding MGP_AJ_T0075342.1 MGP_AJ_G0030210.1 mouse_genomes_project 5 136318855 136325996 + Tsc22d4 protein_coding retained_intron MGP_AJ_T0075343.1 MGP_AJ_G0030210.1 mouse_genomes_project 5 136318892 136336678 + MGP_AJ_P0075343 Tsc22d4 protein_coding protein_coding MGP_AJ_T0075344.1 MGP_AJ_G0030210.1 mouse_genomes_project 5 136324449 136334168 + Tsc22d4 protein_coding retained_intron MGP_AJ_T0075345.1 MGP_AJ_G0030210.1 mouse_genomes_project 5 136333414 136334818 + MGP_AJ_P0075345 Tsc22d4 protein_coding protein_coding MGP_AJ_T0075346.1 MGP_AJ_G0030210.1 mouse_genomes_project 5 136333454 136334702 + MGP_AJ_P0075346 Tsc22d4 protein_coding protein_coding MGP_AJ_T0075347.1 MGP_AJ_G0030210.1 mouse_genomes_project 5 136336968 136344313 + MGP_AJ_P0075347 Tsc22d4 protein_coding protein_coding MGP_AJ_T0075348.1 MGP_AJ_G0030210.1 mouse_genomes_project 5 136336979 136344313 + MGP_AJ_P0075348 Tsc22d4 protein_coding protein_coding MGP_AJ_T0075349.1 MGP_AJ_G0030210.1 mouse_genomes_project 5 136343610 136344203 + Tsc22d4 protein_coding processed_transcript MGP_AJ_T0075587.1 MGP_AJ_G0030263.1 mouse_genomes_project 5 138773567 138839833 + MGP_AJ_P0075587 Elfn1 protein_coding protein_coding MGP_AJ_T0075588.1 MGP_AJ_G0030263.1 mouse_genomes_project 5 138774098 138836159 + Elfn1 protein_coding processed_transcript MGP_AJ_T0072833.1 MGP_AJ_G0029737.1 mouse_genomes_project 5 95550960 95685917 - MGP_AJ_P0072833 Antxr2 protein_coding protein_coding MGP_AJ_T0072834.1 MGP_AJ_G0029737.1 mouse_genomes_project 5 95582890 95685998 - MGP_AJ_P0072834 Antxr2 protein_coding protein_coding MGP_AJ_T0072835.1 MGP_AJ_G0029737.1 mouse_genomes_project 5 95617520 95658318 - Antxr2 protein_coding processed_transcript MGP_AJ_T0074651.1 MGP_AJ_G0030088.1 mouse_genomes_project 5 127213195 127276548 - MGP_AJ_P0074651 Rimbp2 protein_coding protein_coding MGP_AJ_T0074652.1 MGP_AJ_G0030088.1 mouse_genomes_project 5 127213199 127276501 - MGP_AJ_P0074652 Rimbp2 protein_coding protein_coding MGP_AJ_T0074653.1 MGP_AJ_G0030088.1 mouse_genomes_project 5 127215804 127415044 - MGP_AJ_P0074653 Rimbp2 protein_coding protein_coding MGP_AJ_T0074654.1 MGP_AJ_G0030088.1 mouse_genomes_project 5 127215804 127415855 - MGP_AJ_P0074654 Rimbp2 protein_coding protein_coding MGP_AJ_T0074655.1 MGP_AJ_G0030088.1 mouse_genomes_project 5 127216085 127415983 - MGP_AJ_P0074655 Rimbp2 protein_coding protein_coding MGP_AJ_T0074656.1 MGP_AJ_G0030088.1 mouse_genomes_project 5 127262924 127336418 - MGP_AJ_P0074656 Rimbp2 protein_coding protein_coding MGP_AJ_T0074657.1 MGP_AJ_G0030088.1 mouse_genomes_project 5 127296099 127415022 - Rimbp2 protein_coding processed_transcript MGP_AJ_T0072883.1 MGP_AJ_G0029750.1 mouse_genomes_project 5 97753904 97836968 - MGP_AJ_P0072883 Tmem150c protein_coding protein_coding MGP_AJ_T0072884.1 MGP_AJ_G0029750.1 mouse_genomes_project 5 97763000 97836594 - Tmem150c protein_coding retained_intron MGP_AJ_T0072885.1 MGP_AJ_G0029750.1 mouse_genomes_project 5 97763001 97801807 - Tmem150c protein_coding retained_intron MGP_AJ_T0072886.1 MGP_AJ_G0029750.1 mouse_genomes_project 5 97765060 97836730 - Tmem150c protein_coding retained_intron MGP_AJ_T0072887.1 MGP_AJ_G0029750.1 mouse_genomes_project 5 97765181 97836443 - MGP_AJ_P0072887 Tmem150c protein_coding protein_coding MGP_AJ_T0073664.1 MGP_AJ_G0029911.1 mouse_genomes_project 5 112950985 112956771 - MGP_AJ_P0073664 1500011B03Rik protein_coding protein_coding MGP_AJ_T0004763.1 MGP_AJ_G0004111.1 mouse_genomes_project 5 105240851 105268070 - Gm17202 antisense antisense MGP_AJ_T0008046.1 MGP_AJ_G0006568.1 mouse_genomes_project 5 5839611 5840879 - Gm15611 lincRNA lincRNA MGP_AJ_T0011603.1 MGP_AJ_G0009725.1 mouse_genomes_project 5 101290891 101291184 + Gm23085 misc_RNA misc_RNA MGP_AJ_T0015125.1 MGP_AJ_G0013220.1 mouse_genomes_project 5 109103773 109104140 - processed_pseudogene processed_pseudogene MGP_AJ_T0015065.1 MGP_AJ_G0013160.1 mouse_genomes_project 5 88019962 88020533 + processed_pseudogene processed_pseudogene MGP_AJ_T0073533.1 MGP_AJ_G0029889.1 mouse_genomes_project 5 111914393 111921190 - MGP_AJ_P0073533 Tmem119 protein_coding protein_coding MGP_AJ_T0073534.1 MGP_AJ_G0029889.1 mouse_genomes_project 5 111916302 111921120 - MGP_AJ_P0073534 Tmem119 protein_coding protein_coding MGP_AJ_T0100009.1 MGP_AJ_G0037975.1 mouse_genomes_project 5 52474399 52474561 - Gm25513 snRNA snRNA MGP_AJ_T0074670.1 MGP_AJ_G0030091.1 mouse_genomes_project 5 127564743 127687202 + MGP_AJ_P0074670 Adgrd1 protein_coding protein_coding MGP_AJ_T0074671.1 MGP_AJ_G0030091.1 mouse_genomes_project 5 127564750 127568498 + Adgrd1 protein_coding retained_intron MGP_AJ_T0074672.1 MGP_AJ_G0030091.1 mouse_genomes_project 5 127564750 127686278 + MGP_AJ_P0074672 Adgrd1 protein_coding protein_coding MGP_AJ_T0010729.1 MGP_AJ_G0008851.1 mouse_genomes_project 5 136780107 136780189 - Mir106b miRNA miRNA MGP_AJ_T0073416.1 MGP_AJ_G0029863.1 mouse_genomes_project 5 109422348 109475217 + MGP_AJ_P0073416 Pitpnb protein_coding protein_coding MGP_AJ_T0073417.1 MGP_AJ_G0029863.1 mouse_genomes_project 5 109422392 109475217 + MGP_AJ_P0073417 Pitpnb protein_coding protein_coding MGP_AJ_T0073418.1 MGP_AJ_G0029863.1 mouse_genomes_project 5 109422399 109475223 + MGP_AJ_P0073418 Pitpnb protein_coding unknown_likely_coding MGP_AJ_T0073419.1 MGP_AJ_G0029863.1 mouse_genomes_project 5 109438125 109469987 + Pitpnb protein_coding processed_transcript MGP_AJ_T0073420.1 MGP_AJ_G0029863.1 mouse_genomes_project 5 109467038 109470577 + Pitpnb protein_coding retained_intron MGP_AJ_T0008248.1 MGP_AJ_G0006718.1 mouse_genomes_project 5 100918086 100987642 - 4930429D17Rik lincRNA lincRNA MGP_AJ_T0100055.1 MGP_AJ_G0038021.1 mouse_genomes_project 5 122083952 122084099 + Gm24840 snRNA snRNA MGP_AJ_T0001830.1 MGP_AJ_G0001744.1 mouse_genomes_project 5 125755369 125756457 + TEC TEC MGP_AJ_T0075975.1 MGP_AJ_G0030353.1 mouse_genomes_project 5 146005414 146008052 + MGP_AJ_P0075975 Rasl11a protein_coding protein_coding MGP_AJ_T0075976.1 MGP_AJ_G0030353.1 mouse_genomes_project 5 146006092 146007711 + Rasl11a protein_coding retained_intron MGP_AJ_T0075989.1 MGP_AJ_G0030357.1 mouse_genomes_project 5 146242931 146244966 + MGP_AJ_P0075989 Polr1d protein_coding protein_coding MGP_AJ_T0075990.1 MGP_AJ_G0030357.1 mouse_genomes_project 5 146243228 146277337 + MGP_AJ_P0075990 Polr1d protein_coding protein_coding MGP_AJ_T0075991.1 MGP_AJ_G0030357.1 mouse_genomes_project 5 146243430 146277573 + MGP_AJ_P0075991 Polr1d protein_coding protein_coding MGP_AJ_T0075992.1 MGP_AJ_G0030357.1 mouse_genomes_project 5 146243446 146277550 + MGP_AJ_P0075992 Polr1d protein_coding nonsense_mediated_decay MGP_AJ_T0075993.1 MGP_AJ_G0030357.1 mouse_genomes_project 5 146267125 146276846 + Polr1d protein_coding retained_intron MGP_AJ_T0075994.1 MGP_AJ_G0030357.1 mouse_genomes_project 5 146271344 146276962 + Polr1d protein_coding processed_transcript MGP_AJ_T0008373.1 MGP_AJ_G0006798.1 mouse_genomes_project 5 122506035 122523076 - Gm43661 lincRNA lincRNA MGP_AJ_T0072439.1 MGP_AJ_G0029631.1 mouse_genomes_project 5 83262182 83337052 - MGP_AJ_P0072439 Cenpc1 protein_coding protein_coding MGP_AJ_T0072440.1 MGP_AJ_G0029631.1 mouse_genomes_project 5 83315132 83337020 - Cenpc1 protein_coding retained_intron MGP_AJ_T0072441.1 MGP_AJ_G0029631.1 mouse_genomes_project 5 83315133 83337016 - Cenpc1 protein_coding retained_intron MGP_AJ_T0072442.1 MGP_AJ_G0029631.1 mouse_genomes_project 5 83327165 83336991 - Cenpc1 protein_coding retained_intron MGP_AJ_T0004718.1 MGP_AJ_G0004080.1 mouse_genomes_project 5 70405785 70406657 + 1700071G01Rik antisense antisense MGP_AJ_T0001876.1 MGP_AJ_G0001789.1 mouse_genomes_project 5 132993722 132997946 - TEC TEC MGP_AJ_T0008217.1 MGP_AJ_G0006696.1 mouse_genomes_project 5 94555733 94568565 - Gm33370 lincRNA lincRNA MGP_AJ_T0070175.1 MGP_AJ_G0029244.1 mouse_genomes_project 5 4847466 4871906 + MGP_AJ_P0070175 Sri protein_coding protein_coding MGP_AJ_T0070176.1 MGP_AJ_G0029244.1 mouse_genomes_project 5 4858536 4871678 + MGP_AJ_P0070176 Sri protein_coding protein_coding MGP_AJ_T0070177.1 MGP_AJ_G0029244.1 mouse_genomes_project 5 4858567 4859865 + Sri protein_coding retained_intron MGP_AJ_T0070178.1 MGP_AJ_G0029244.1 mouse_genomes_project 5 4858571 4861731 + Sri protein_coding retained_intron MGP_AJ_T0070179.1 MGP_AJ_G0029244.1 mouse_genomes_project 5 4858617 4866656 + Sri protein_coding retained_intron MGP_AJ_T0070180.1 MGP_AJ_G0029244.1 mouse_genomes_project 5 4861351 4870179 + Sri protein_coding retained_intron MGP_AJ_T0070181.1 MGP_AJ_G0029244.1 mouse_genomes_project 5 4863278 4864484 + Sri protein_coding retained_intron MGP_AJ_T0004647.1 MGP_AJ_G0004023.1 mouse_genomes_project 5 21336365 21355334 - Gm15587 antisense antisense MGP_AJ_T0004648.1 MGP_AJ_G0004023.1 mouse_genomes_project 5 21339360 21355366 - Gm15587 antisense antisense MGP_AJ_T0001573.1 MGP_AJ_G0001490.1 mouse_genomes_project 5 46231032 46233489 - TEC TEC MGP_AJ_T0075112.1 MGP_AJ_G0030169.1 mouse_genomes_project 5 134688772 134702499 - MGP_AJ_P0075112 Lrwd1 protein_coding protein_coding MGP_AJ_T0075113.1 MGP_AJ_G0030169.1 mouse_genomes_project 5 134689067 134702426 - Lrwd1 protein_coding retained_intron MGP_AJ_T0075114.1 MGP_AJ_G0030169.1 mouse_genomes_project 5 134689075 134691560 - Lrwd1 protein_coding retained_intron MGP_AJ_T0075115.1 MGP_AJ_G0030169.1 mouse_genomes_project 5 134689692 134696245 - MGP_AJ_P0075115 Lrwd1 protein_coding protein_coding MGP_AJ_T0075116.1 MGP_AJ_G0030169.1 mouse_genomes_project 5 134695401 134702447 - Lrwd1 protein_coding retained_intron MGP_AJ_T0075117.1 MGP_AJ_G0030169.1 mouse_genomes_project 5 134696675 134702427 - Lrwd1 protein_coding retained_intron MGP_AJ_T0075118.1 MGP_AJ_G0030169.1 mouse_genomes_project 5 134697667 134702487 - Lrwd1 protein_coding retained_intron MGP_AJ_T0075119.1 MGP_AJ_G0030169.1 mouse_genomes_project 5 134698299 134699870 - Lrwd1 protein_coding retained_intron MGP_AJ_T0075120.1 MGP_AJ_G0030169.1 mouse_genomes_project 5 134699024 134702422 - MGP_AJ_P0075120 Lrwd1 protein_coding protein_coding MGP_AJ_T0014885.1 MGP_AJ_G0012980.1 mouse_genomes_project 5 18552609 18553110 - processed_pseudogene processed_pseudogene MGP_AJ_T0074238.1 MGP_AJ_G0030021.1 mouse_genomes_project 5 121117905 121140166 + MGP_AJ_P0074238 P2rx4 protein_coding protein_coding MGP_AJ_T0074239.1 MGP_AJ_G0030021.1 mouse_genomes_project 5 121117930 121122040 + P2rx4 protein_coding retained_intron MGP_AJ_T0074240.1 MGP_AJ_G0030021.1 mouse_genomes_project 5 121117931 121129903 + P2rx4 protein_coding retained_intron MGP_AJ_T0074241.1 MGP_AJ_G0030021.1 mouse_genomes_project 5 121117941 121135792 + MGP_AJ_P0074241 P2rx4 protein_coding nonsense_mediated_decay MGP_AJ_T0074242.1 MGP_AJ_G0030021.1 mouse_genomes_project 5 121117945 121139472 + MGP_AJ_P0074242 P2rx4 protein_coding protein_coding MGP_AJ_T0074243.1 MGP_AJ_G0030021.1 mouse_genomes_project 5 121118015 121138751 + MGP_AJ_P0074243 P2rx4 protein_coding protein_coding MGP_AJ_T0074244.1 MGP_AJ_G0030021.1 mouse_genomes_project 5 121118015 121138751 + MGP_AJ_P0074244 P2rx4 protein_coding protein_coding MGP_AJ_T0074245.1 MGP_AJ_G0030021.1 mouse_genomes_project 5 121135080 121135691 + P2rx4 protein_coding retained_intron MGP_AJ_T0074246.1 MGP_AJ_G0030021.1 mouse_genomes_project 5 121138091 121139013 + P2rx4 protein_coding processed_transcript MGP_AJ_T0014903.1 MGP_AJ_G0012998.1 mouse_genomes_project 5 20975997 20976523 - processed_pseudogene processed_pseudogene MGP_AJ_T0075732.1 MGP_AJ_G0030295.1 mouse_genomes_project 5 142193456 142214388 - MGP_AJ_P0075732 Zfp316 protein_coding protein_coding MGP_AJ_T0075733.1 MGP_AJ_G0030295.1 mouse_genomes_project 5 142194048 142199960 - Zfp316 protein_coding retained_intron MGP_AJ_T0075734.1 MGP_AJ_G0030295.1 mouse_genomes_project 5 142196968 142209171 - MGP_AJ_P0075734 Zfp316 protein_coding protein_coding MGP_AJ_T0014980.1 MGP_AJ_G0013075.1 mouse_genomes_project 5 52764846 52765153 + processed_pseudogene processed_pseudogene MGP_AJ_T0004790.1 MGP_AJ_G0004132.1 mouse_genomes_project 5 114307519 114313056 + C330018A13Rik antisense antisense MGP_AJ_T0074006.1 MGP_AJ_G0029982.1 mouse_genomes_project 5 119121078 119139960 + MGP_AJ_P0074006 Oas1h protein_coding protein_coding MGP_AJ_T0074007.1 MGP_AJ_G0029982.1 mouse_genomes_project 5 119121095 119139595 + MGP_AJ_P0074007 Oas1h protein_coding protein_coding MGP_AJ_T0074019.1 MGP_AJ_G0029988.1 mouse_genomes_project 5 119542182 119546947 + MGP_AJ_P0074019 Rpl6 protein_coding protein_coding MGP_AJ_T0074020.1 MGP_AJ_G0029988.1 mouse_genomes_project 5 119542222 119543901 + Rpl6 protein_coding retained_intron MGP_AJ_T0074021.1 MGP_AJ_G0029988.1 mouse_genomes_project 5 119542247 119542961 + Rpl6 protein_coding retained_intron MGP_AJ_T0074022.1 MGP_AJ_G0029988.1 mouse_genomes_project 5 119543107 119544144 + Rpl6 protein_coding retained_intron MGP_AJ_T0074023.1 MGP_AJ_G0029988.1 mouse_genomes_project 5 119543308 119546680 + MGP_AJ_P0074023 Rpl6 protein_coding unknown_likely_coding MGP_AJ_T0074024.1 MGP_AJ_G0029988.1 mouse_genomes_project 5 119544336 119545083 + Rpl6 protein_coding retained_intron MGP_AJ_T0074025.1 MGP_AJ_G0029988.1 mouse_genomes_project 5 119544422 119546671 + MGP_AJ_P0074025 Rpl6 protein_coding nonsense_mediated_decay MGP_AJ_T0074026.1 MGP_AJ_G0029988.1 mouse_genomes_project 5 119544775 119546261 + Rpl6 protein_coding retained_intron MGP_AJ_T0074027.1 MGP_AJ_G0029988.1 mouse_genomes_project 5 119545894 119546672 + Rpl6 protein_coding retained_intron MGP_AJ_T0001773.1 MGP_AJ_G0001688.1 mouse_genomes_project 5 113192002 113193317 + TEC TEC MGP_AJ_T0001453.1 MGP_AJ_G0001374.1 mouse_genomes_project 5 10392507 10396541 + TEC TEC MGP_AJ_T0071772.1 MGP_AJ_G0029519.1 mouse_genomes_project 5 50225891 50249211 + MGP_AJ_P0071772 Slc34a2 protein_coding protein_coding MGP_AJ_T0071773.1 MGP_AJ_G0029519.1 mouse_genomes_project 5 50237154 50260428 + MGP_AJ_P0071773 Slc34a2 protein_coding protein_coding MGP_AJ_T0071774.1 MGP_AJ_G0029519.1 mouse_genomes_project 5 50237155 50254084 + Slc34a2 protein_coding retained_intron MGP_AJ_T0001758.1 MGP_AJ_G0001673.1 mouse_genomes_project 5 109510633 109512753 + TEC TEC MGP_AJ_T0008379.1 MGP_AJ_G0006803.1 mouse_genomes_project 5 124396983 124400942 - Gm42945 lincRNA lincRNA MGP_AJ_T0008380.1 MGP_AJ_G0006803.1 mouse_genomes_project 5 124396997 124404426 - Gm42945 lincRNA lincRNA MGP_AJ_T0073993.1 MGP_AJ_G0029978.1 mouse_genomes_project 5 119001854 119026413 - MGP_AJ_P0073993 Oas3 protein_coding protein_coding MGP_AJ_T0073994.1 MGP_AJ_G0029978.1 mouse_genomes_project 5 119002972 119005015 - MGP_AJ_P0073994 Oas3 protein_coding protein_coding MGP_AJ_T0073995.1 MGP_AJ_G0029978.1 mouse_genomes_project 5 119004155 119006411 - Oas3 protein_coding retained_intron MGP_AJ_T0073996.1 MGP_AJ_G0029978.1 mouse_genomes_project 5 119012678 119026392 - Oas3 protein_coding retained_intron MGP_AJ_T0014882.1 MGP_AJ_G0012977.1 mouse_genomes_project 5 18157547 18157799 + processed_pseudogene processed_pseudogene MGP_AJ_T0075596.1 MGP_AJ_G0030266.1 mouse_genomes_project 5 139203627 139207852 - MGP_AJ_P0075596 Mrm2 protein_coding protein_coding MGP_AJ_T0014918.1 MGP_AJ_G0013013.1 mouse_genomes_project 5 24009626 24011308 - processed_pseudogene processed_pseudogene MGP_AJ_T0015006.1 MGP_AJ_G0013101.1 mouse_genomes_project 5 61389778 61390727 - processed_pseudogene processed_pseudogene MGP_AJ_T0075998.1 MGP_AJ_G0030361.1 mouse_genomes_project 5 146484682 146492107 - MGP_AJ_P0075998 Urad protein_coding protein_coding MGP_AJ_T0001840.1 MGP_AJ_G0001754.1 mouse_genomes_project 5 128416599 128418460 + TEC TEC MGP_AJ_T0001592.1 MGP_AJ_G0001509.1 mouse_genomes_project 5 49058684 49059913 - TEC TEC MGP_AJ_T0072576.1 MGP_AJ_G0029677.1 mouse_genomes_project 5 86121410 86145883 - MGP_AJ_P0072576 Grsf1 protein_coding protein_coding MGP_AJ_T0072577.1 MGP_AJ_G0029677.1 mouse_genomes_project 5 86123131 86146557 - MGP_AJ_P0072577 Grsf1 protein_coding protein_coding MGP_AJ_T0072578.1 MGP_AJ_G0029677.1 mouse_genomes_project 5 86126218 86141542 - Grsf1 protein_coding retained_intron MGP_AJ_T0072579.1 MGP_AJ_G0029677.1 mouse_genomes_project 5 86144093 86145585 - Grsf1 protein_coding processed_transcript MGP_AJ_T0001761.1 MGP_AJ_G0001676.1 mouse_genomes_project 5 110751228 110752529 + TEC TEC MGP_AJ_T0073667.1 MGP_AJ_G0029914.1 mouse_genomes_project 5 113011539 113039328 + MGP_AJ_P0073667 4930519G04Rik protein_coding protein_coding MGP_AJ_T0073669.1 MGP_AJ_G0029914.1 mouse_genomes_project 5 113017509 113034475 + 4930519G04Rik protein_coding retained_intron MGP_AJ_T0073670.1 MGP_AJ_G0029914.1 mouse_genomes_project 5 113021292 113037525 + MGP_AJ_P0073670 4930519G04Rik protein_coding protein_coding MGP_AJ_T0073671.1 MGP_AJ_G0029914.1 mouse_genomes_project 5 113023260 113037525 + MGP_AJ_P0073671 4930519G04Rik protein_coding protein_coding MGP_AJ_T0014868.1 MGP_AJ_G0012963.1 mouse_genomes_project 5 12824948 12825192 - processed_pseudogene processed_pseudogene MGP_AJ_T0008174.1 MGP_AJ_G0006659.1 mouse_genomes_project 5 71173090 71180580 + Gm43801 lincRNA lincRNA MGP_AJ_T0015077.1 MGP_AJ_G0013172.1 mouse_genomes_project 5 95818808 95819804 + processed_pseudogene processed_pseudogene MGP_AJ_T0001532.1 MGP_AJ_G0001450.1 mouse_genomes_project 5 41279989 41281680 + TEC TEC MGP_AJ_T0015113.1 MGP_AJ_G0013208.1 mouse_genomes_project 5 106894355 106897454 + processed_pseudogene processed_pseudogene MGP_AJ_T0008220.1 MGP_AJ_G0006699.1 mouse_genomes_project 5 94794636 94801436 + Gm43146 lincRNA lincRNA MGP_AJ_T0001785.1 MGP_AJ_G0001700.1 mouse_genomes_project 5 116215477 116216399 - TEC TEC MGP_AJ_T0015055.1 MGP_AJ_G0013150.1 mouse_genomes_project 5 85074492 85074597 - processed_pseudogene processed_pseudogene MGP_AJ_T0001841.1 MGP_AJ_G0001755.1 mouse_genomes_project 5 128585891 128586389 + TEC TEC MGP_AJ_T0014893.1 MGP_AJ_G0012988.1 mouse_genomes_project 5 19622868 19623940 - processed_pseudogene processed_pseudogene MGP_AJ_T0072481.1 MGP_AJ_G0029645.1 mouse_genomes_project 5 84278762 84291469 + MGP_AJ_P0072481 Ugt2b35 protein_coding protein_coding MGP_AJ_T0008270.1 MGP_AJ_G0006734.1 mouse_genomes_project 5 105493994 105522367 - Gm26692 lincRNA lincRNA MGP_AJ_T0010732.1 MGP_AJ_G0008854.1 mouse_genomes_project 5 138634646 138634711 - Mir7037 miRNA miRNA MGP_AJ_T0015136.1 MGP_AJ_G0013231.1 mouse_genomes_project 5 113457220 113457358 - processed_pseudogene processed_pseudogene MGP_AJ_T0101309.1 MGP_AJ_G0039275.1 mouse_genomes_project 5 105749908 105750040 + Gm26387 snoRNA snoRNA MGP_AJ_T0015063.1 MGP_AJ_G0013158.1 mouse_genomes_project 5 86956167 86956993 - processed_pseudogene processed_pseudogene MGP_AJ_T0073932.1 MGP_AJ_G0029964.1 mouse_genomes_project 5 118338504 118421107 + MGP_AJ_P0073932 Rbm19 protein_coding protein_coding MGP_AJ_T0073933.1 MGP_AJ_G0029964.1 mouse_genomes_project 5 118338556 118341021 + Rbm19 protein_coding retained_intron MGP_AJ_T0073934.1 MGP_AJ_G0029964.1 mouse_genomes_project 5 118338559 118421105 + MGP_AJ_P0073934 Rbm19 protein_coding nonsense_mediated_decay MGP_AJ_T0073935.1 MGP_AJ_G0029964.1 mouse_genomes_project 5 118340635 118342333 + Rbm19 protein_coding retained_intron MGP_AJ_T0073936.1 MGP_AJ_G0029964.1 mouse_genomes_project 5 118378863 118421097 + Rbm19 protein_coding processed_transcript MGP_AJ_T0073937.1 MGP_AJ_G0029964.1 mouse_genomes_project 5 118384755 118420319 + Rbm19 protein_coding processed_transcript MGP_AJ_T0073938.1 MGP_AJ_G0029964.1 mouse_genomes_project 5 118390393 118408366 + Rbm19 protein_coding processed_transcript MGP_AJ_T0073939.1 MGP_AJ_G0029964.1 mouse_genomes_project 5 118391987 118421103 + Rbm19 protein_coding processed_transcript MGP_AJ_T0073940.1 MGP_AJ_G0029964.1 mouse_genomes_project 5 118395176 118420116 + Rbm19 protein_coding processed_transcript MGP_AJ_T0073941.1 MGP_AJ_G0029964.1 mouse_genomes_project 5 118397801 118420095 + Rbm19 protein_coding processed_transcript MGP_AJ_T0008132.1 MGP_AJ_G0006626.1 mouse_genomes_project 5 42139533 42152863 + 4930431F12Rik lincRNA lincRNA MGP_AJ_T0008133.1 MGP_AJ_G0006626.1 mouse_genomes_project 5 42139581 42141893 + 4930431F12Rik lincRNA lincRNA MGP_AJ_T0001567.1 MGP_AJ_G0001484.1 mouse_genomes_project 5 46111925 46113872 - TEC TEC MGP_AJ_T0001778.1 MGP_AJ_G0001693.1 mouse_genomes_project 5 114564538 114566001 - TEC TEC MGP_AJ_T0001647.1 MGP_AJ_G0001563.1 mouse_genomes_project 5 63190331 63191232 + TEC TEC MGP_AJ_T0004762.1 MGP_AJ_G0004110.1 mouse_genomes_project 5 105228640 105239509 - Gm42902 antisense antisense MGP_AJ_T0001673.1 MGP_AJ_G0001589.1 mouse_genomes_project 5 66408095 66409672 - TEC TEC MGP_AJ_T0075078.1 MGP_AJ_G0030163.1 mouse_genomes_project 5 134541218 134549685 + MGP_AJ_P0075078 Zp3 protein_coding protein_coding MGP_AJ_T0075079.1 MGP_AJ_G0030163.1 mouse_genomes_project 5 134541287 134548246 + MGP_AJ_P0075079 Zp3 protein_coding nonsense_mediated_decay MGP_AJ_T0074618.1 MGP_AJ_G0030080.1 mouse_genomes_project 5 123939097 123939500 - MGP_AJ_P0074618 Rpl36-ps3 protein_coding protein_coding MGP_AJ_T0014894.1 MGP_AJ_G0012989.1 mouse_genomes_project 5 19657793 19658228 - processed_pseudogene processed_pseudogene MGP_AJ_T0015049.1 MGP_AJ_G0013144.1 mouse_genomes_project 5 84292353 84293413 + processed_pseudogene processed_pseudogene MGP_AJ_T0102647.1 MGP_AJ_G0040389.1 mouse_genomes_project 5 107532062 107534280 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0073089.1 MGP_AJ_G0029796.1 mouse_genomes_project 5 104670395 104724564 - MGP_AJ_P0073089 Hfm1 protein_coding nonsense_mediated_decay MGP_AJ_T0073090.1 MGP_AJ_G0029796.1 mouse_genomes_project 5 104670397 104755773 - MGP_AJ_P0073090 Hfm1 protein_coding protein_coding MGP_AJ_T0073091.1 MGP_AJ_G0029796.1 mouse_genomes_project 5 104670400 104755335 - MGP_AJ_P0073091 Hfm1 protein_coding protein_coding MGP_AJ_T0073092.1 MGP_AJ_G0029796.1 mouse_genomes_project 5 104670862 104755337 - MGP_AJ_P0073092 Hfm1 protein_coding unknown_likely_coding MGP_AJ_T0073093.1 MGP_AJ_G0029796.1 mouse_genomes_project 5 104671765 104719225 - MGP_AJ_P0073093 Hfm1 protein_coding protein_coding MGP_AJ_T0073094.1 MGP_AJ_G0029796.1 mouse_genomes_project 5 104731677 104755711 - Hfm1 protein_coding retained_intron MGP_AJ_T0073095.1 MGP_AJ_G0029796.1 mouse_genomes_project 5 104731677 104755335 - MGP_AJ_P0073095 Hfm1 protein_coding nonsense_mediated_decay MGP_AJ_T0073096.1 MGP_AJ_G0029796.1 mouse_genomes_project 5 104731861 104755297 - MGP_AJ_P0073096 Hfm1 protein_coding protein_coding MGP_AJ_T0075025.1 MGP_AJ_G0030153.1 mouse_genomes_project 5 134125073 134128186 - MGP_AJ_P0075025 Ccl24 protein_coding protein_coding MGP_AJ_T0075026.1 MGP_AJ_G0030153.1 mouse_genomes_project 5 134125716 134128186 - MGP_AJ_P0075026 Ccl24 protein_coding protein_coding MGP_AJ_T0014951.1 MGP_AJ_G0013046.1 mouse_genomes_project 5 36528451 36528908 - processed_pseudogene processed_pseudogene MGP_AJ_T0099994.1 MGP_AJ_G0037960.1 mouse_genomes_project 5 21411297 21411398 - Gm22333 snRNA snRNA MGP_AJ_T0073877.1 MGP_AJ_G0029952.1 mouse_genomes_project 5 115562012 115572615 - Rfc5 protein_coding retained_intron MGP_AJ_T0073878.1 MGP_AJ_G0029952.1 mouse_genomes_project 5 115562012 115572640 - MGP_AJ_P0073878 Rfc5 protein_coding protein_coding MGP_AJ_T0073879.1 MGP_AJ_G0029952.1 mouse_genomes_project 5 115563204 115564439 - Rfc5 protein_coding retained_intron MGP_AJ_T0073880.1 MGP_AJ_G0029952.1 mouse_genomes_project 5 115563428 115563804 - Rfc5 protein_coding retained_intron MGP_AJ_T0073881.1 MGP_AJ_G0029952.1 mouse_genomes_project 5 115565321 115570425 - Rfc5 protein_coding retained_intron MGP_AJ_T0073882.1 MGP_AJ_G0029952.1 mouse_genomes_project 5 115569874 115572638 - MGP_AJ_P0073882 Rfc5 protein_coding protein_coding MGP_AJ_T0071370.1 MGP_AJ_G0029450.1 mouse_genomes_project 5 32884401 32917000 - MGP_AJ_P0071370 Sh3tc1 protein_coding protein_coding MGP_AJ_T0071371.1 MGP_AJ_G0029450.1 mouse_genomes_project 5 32884409 32917278 - MGP_AJ_P0071371 Sh3tc1 protein_coding protein_coding MGP_AJ_T0071372.1 MGP_AJ_G0029450.1 mouse_genomes_project 5 32884410 32911948 - MGP_AJ_P0071372 Sh3tc1 protein_coding nonsense_mediated_decay MGP_AJ_T0071373.1 MGP_AJ_G0029450.1 mouse_genomes_project 5 32884412 32904253 - MGP_AJ_P0071373 Sh3tc1 protein_coding nonsense_mediated_decay MGP_AJ_T0071374.1 MGP_AJ_G0029450.1 mouse_genomes_project 5 32884412 32927989 - MGP_AJ_P0071374 Sh3tc1 protein_coding protein_coding MGP_AJ_T0071375.1 MGP_AJ_G0029450.1 mouse_genomes_project 5 32884414 32907240 - Sh3tc1 protein_coding retained_intron MGP_AJ_T0071376.1 MGP_AJ_G0029450.1 mouse_genomes_project 5 32911069 32917014 - Sh3tc1 protein_coding processed_transcript MGP_AJ_T0073611.1 MGP_AJ_G0029903.1 mouse_genomes_project 5 112568956 112582057 - MGP_AJ_P0073611 Mmab protein_coding protein_coding MGP_AJ_T0073612.1 MGP_AJ_G0029903.1 mouse_genomes_project 5 112571119 112582018 - MGP_AJ_P0073612 Mmab protein_coding protein_coding MGP_AJ_T0073613.1 MGP_AJ_G0029903.1 mouse_genomes_project 5 112572550 112581989 - MGP_AJ_P0073613 Mmab protein_coding protein_coding MGP_AJ_T0072814.1 MGP_AJ_G0029732.1 mouse_genomes_project 5 94437289 94460988 + MGP_AJ_P0072814 Anxa3 protein_coding protein_coding MGP_AJ_T0072815.1 MGP_AJ_G0029732.1 mouse_genomes_project 5 94437335 94490013 + MGP_AJ_P0072815 Anxa3 protein_coding protein_coding MGP_AJ_T0072816.1 MGP_AJ_G0029732.1 mouse_genomes_project 5 94437391 94469509 + MGP_AJ_P0072816 Anxa3 protein_coding protein_coding MGP_AJ_T0072817.1 MGP_AJ_G0029732.1 mouse_genomes_project 5 94437450 94470450 + MGP_AJ_P0072817 Anxa3 protein_coding protein_coding MGP_AJ_T0072818.1 MGP_AJ_G0029732.1 mouse_genomes_project 5 94455717 94479346 + Anxa3 protein_coding retained_intron MGP_AJ_T0072819.1 MGP_AJ_G0029732.1 mouse_genomes_project 5 94460879 94482392 + Anxa3 protein_coding retained_intron MGP_AJ_T0072820.1 MGP_AJ_G0029732.1 mouse_genomes_project 5 94472470 94474987 + Anxa3 protein_coding retained_intron MGP_AJ_T0072821.1 MGP_AJ_G0029732.1 mouse_genomes_project 5 94474581 94489729 + Anxa3 protein_coding retained_intron MGP_AJ_T0072822.1 MGP_AJ_G0029732.1 mouse_genomes_project 5 94486042 94489907 + MGP_AJ_P0072822 Anxa3 protein_coding protein_coding MGP_AJ_T0001460.1 MGP_AJ_G0001381.1 mouse_genomes_project 5 11472250 11474897 + TEC TEC MGP_AJ_T0010672.1 MGP_AJ_G0008794.1 mouse_genomes_project 5 32198078 32198145 + Mir3097 miRNA miRNA MGP_AJ_T0004669.1 MGP_AJ_G0004041.1 mouse_genomes_project 5 31843126 31872137 - Gm42560 antisense antisense MGP_AJ_T0074182.1 MGP_AJ_G0030012.1 mouse_genomes_project 5 120737689 120769198 - MGP_AJ_P0074182 Rad9b protein_coding protein_coding MGP_AJ_T0074183.1 MGP_AJ_G0030012.1 mouse_genomes_project 5 120739981 120766260 - MGP_AJ_P0074183 Rad9b protein_coding protein_coding MGP_AJ_T0074184.1 MGP_AJ_G0030012.1 mouse_genomes_project 5 120739983 120769199 - MGP_AJ_P0074184 Rad9b protein_coding protein_coding MGP_AJ_T0074185.1 MGP_AJ_G0030012.1 mouse_genomes_project 5 120766237 120767751 - MGP_AJ_P0074185 Rad9b protein_coding protein_coding MGP_AJ_T0074186.1 MGP_AJ_G0030012.1 mouse_genomes_project 5 120767460 120769186 - Rad9b protein_coding retained_intron MGP_AJ_T0076050.1 MGP_AJ_G0030368.1 mouse_genomes_project 5 147489224 147560967 - MGP_AJ_P0076050 Slc7a1 protein_coding protein_coding MGP_AJ_T0076051.1 MGP_AJ_G0030368.1 mouse_genomes_project 5 147496321 147553876 - MGP_AJ_P0076051 Slc7a1 protein_coding protein_coding MGP_AJ_T0076052.1 MGP_AJ_G0030368.1 mouse_genomes_project 5 147502239 147504390 - Slc7a1 protein_coding retained_intron MGP_AJ_T0076053.1 MGP_AJ_G0030368.1 mouse_genomes_project 5 147503741 147560854 - MGP_AJ_P0076053 Slc7a1 protein_coding protein_coding MGP_AJ_T0076054.1 MGP_AJ_G0030368.1 mouse_genomes_project 5 147513824 147533013 - MGP_AJ_P0076054 Slc7a1 protein_coding protein_coding MGP_AJ_T0076055.1 MGP_AJ_G0030368.1 mouse_genomes_project 5 147552477 147554710 - Slc7a1 protein_coding retained_intron MGP_AJ_T0018170.1 MGP_AJ_G0015585.1 mouse_genomes_project 5 105560230 105562178 + A430072P03Rik processed_transcript processed_transcript MGP_AJ_T0018171.1 MGP_AJ_G0015585.1 mouse_genomes_project 5 105561471 105563875 + A430072P03Rik processed_transcript processed_transcript MGP_AJ_T0008131.1 MGP_AJ_G0006625.1 mouse_genomes_project 5 42044371 42056100 + Gm42750 lincRNA lincRNA MGP_AJ_T0015107.1 MGP_AJ_G0013202.1 mouse_genomes_project 5 105994332 105996014 - processed_pseudogene processed_pseudogene MGP_AJ_T0018183.1 MGP_AJ_G0015589.1 mouse_genomes_project 5 121867175 121869884 + Gm43813 processed_transcript sense_intronic MGP_AJ_T0018184.1 MGP_AJ_G0015589.1 mouse_genomes_project 5 121867175 121872476 + Gm43813 processed_transcript TEC MGP_AJ_T0071871.1 MGP_AJ_G0029539.1 mouse_genomes_project 5 62273853 62311807 - Tmem156 protein_coding processed_transcript MGP_AJ_T0071872.1 MGP_AJ_G0029539.1 mouse_genomes_project 5 62282021 62311762 - MGP_AJ_P0071872 Tmem156 protein_coding protein_coding MGP_AJ_T0071873.1 MGP_AJ_G0029539.1 mouse_genomes_project 5 62284569 62300175 - MGP_AJ_P0071873 Tmem156 protein_coding unknown_likely_coding MGP_AJ_T0071874.1 MGP_AJ_G0029539.1 mouse_genomes_project 5 62310892 62311803 - Tmem156 protein_coding retained_intron MGP_AJ_T0015048.1 MGP_AJ_G0013143.1 mouse_genomes_project 5 84232229 84233823 - processed_pseudogene processed_pseudogene MGP_AJ_T0070787.1 MGP_AJ_G0029363.1 mouse_genomes_project 5 27889427 27900924 + MGP_AJ_P0070787 Tmem214 protein_coding protein_coding MGP_AJ_T0070788.1 MGP_AJ_G0029363.1 mouse_genomes_project 5 27891046 27898730 + MGP_AJ_P0070788 Tmem214 protein_coding protein_coding MGP_AJ_T0070789.1 MGP_AJ_G0029363.1 mouse_genomes_project 5 27891048 27900050 + Tmem214 protein_coding retained_intron MGP_AJ_T0070790.1 MGP_AJ_G0029363.1 mouse_genomes_project 5 27891050 27899154 + Tmem214 protein_coding retained_intron MGP_AJ_T0070791.1 MGP_AJ_G0029363.1 mouse_genomes_project 5 27891083 27898476 + MGP_AJ_P0070791 Tmem214 protein_coding unknown_likely_coding MGP_AJ_T0070792.1 MGP_AJ_G0029363.1 mouse_genomes_project 5 27891779 27893003 + Tmem214 protein_coding retained_intron MGP_AJ_T0070793.1 MGP_AJ_G0029363.1 mouse_genomes_project 5 27893290 27895112 + Tmem214 protein_coding processed_transcript MGP_AJ_T0070794.1 MGP_AJ_G0029363.1 mouse_genomes_project 5 27893335 27899149 + Tmem214 protein_coding retained_intron MGP_AJ_T0070047.1 MGP_AJ_G0029224.1 mouse_genomes_project 5 291940 332283 + MGP_AJ_P0070047 Pex1 protein_coding protein_coding MGP_AJ_T0070048.1 MGP_AJ_G0029224.1 mouse_genomes_project 5 291940 332281 + MGP_AJ_P0070048 Pex1 protein_coding protein_coding MGP_AJ_T0070049.1 MGP_AJ_G0029224.1 mouse_genomes_project 5 292073 301817 + MGP_AJ_P0070049 Pex1 protein_coding protein_coding MGP_AJ_T0070050.1 MGP_AJ_G0029224.1 mouse_genomes_project 5 292245 319068 + MGP_AJ_P0070050 Pex1 protein_coding protein_coding MGP_AJ_T0070051.1 MGP_AJ_G0029224.1 mouse_genomes_project 5 300776 302076 + Pex1 protein_coding retained_intron MGP_AJ_T0070052.1 MGP_AJ_G0029224.1 mouse_genomes_project 5 302156 315747 + MGP_AJ_P0070052 Pex1 protein_coding protein_coding MGP_AJ_T0070053.1 MGP_AJ_G0029224.1 mouse_genomes_project 5 305573 313158 + Pex1 protein_coding retained_intron MGP_AJ_T0070054.1 MGP_AJ_G0029224.1 mouse_genomes_project 5 313933 319541 + MGP_AJ_P0070054 Pex1 protein_coding nonsense_mediated_decay MGP_AJ_T0070055.1 MGP_AJ_G0029224.1 mouse_genomes_project 5 314806 315793 + Pex1 protein_coding retained_intron MGP_AJ_T0070056.1 MGP_AJ_G0029224.1 mouse_genomes_project 5 319102 319505 + Pex1 protein_coding retained_intron MGP_AJ_T0070057.1 MGP_AJ_G0029224.1 mouse_genomes_project 5 322240 322878 + Pex1 protein_coding retained_intron MGP_AJ_T0070059.1 MGP_AJ_G0029224.1 mouse_genomes_project 5 330221 330962 + Pex1 protein_coding retained_intron MGP_AJ_T0070060.1 MGP_AJ_G0029224.1 mouse_genomes_project 5 330665 332012 + Pex1 protein_coding retained_intron MGP_AJ_T0070061.1 MGP_AJ_G0029224.1 mouse_genomes_project 5 331201 331869 + Pex1 protein_coding retained_intron MGP_AJ_T0073794.1 MGP_AJ_G0029939.1 mouse_genomes_project 5 113810596 113826394 + MGP_AJ_P0073794 Rab35 protein_coding protein_coding MGP_AJ_T0073795.1 MGP_AJ_G0029939.1 mouse_genomes_project 5 113810832 113824777 + MGP_AJ_P0073795 Rab35 protein_coding nonsense_mediated_decay MGP_AJ_T0014992.1 MGP_AJ_G0013087.1 mouse_genomes_project 5 56948138 56948550 + processed_pseudogene processed_pseudogene MGP_AJ_T0100050.1 MGP_AJ_G0038016.1 mouse_genomes_project 5 116165918 116166025 - Gm25343 snRNA snRNA MGP_AJ_T0101298.1 MGP_AJ_G0039264.1 mouse_genomes_project 5 85104920 85105043 - Gm24314 snoRNA snoRNA MGP_AJ_T0071899.1 MGP_AJ_G0029544.1 mouse_genomes_project 5 62607981 62611061 - MGP_AJ_P0071899 Rpl9 protein_coding protein_coding MGP_AJ_T0071900.1 MGP_AJ_G0029544.1 mouse_genomes_project 5 62607988 62608539 - Rpl9 protein_coding retained_intron MGP_AJ_T0071901.1 MGP_AJ_G0029544.1 mouse_genomes_project 5 62607988 62610630 - MGP_AJ_P0071901 Rpl9 protein_coding protein_coding MGP_AJ_T0071902.1 MGP_AJ_G0029544.1 mouse_genomes_project 5 62607988 62610458 - MGP_AJ_P0071902 Rpl9 protein_coding nonsense_mediated_decay MGP_AJ_T0071903.1 MGP_AJ_G0029544.1 mouse_genomes_project 5 62607988 62611024 - MGP_AJ_P0071903 Rpl9 protein_coding protein_coding MGP_AJ_T0071904.1 MGP_AJ_G0029544.1 mouse_genomes_project 5 62607989 62611023 - Rpl9 protein_coding retained_intron MGP_AJ_T0071905.1 MGP_AJ_G0029544.1 mouse_genomes_project 5 62608031 62608998 - Rpl9 protein_coding retained_intron MGP_AJ_T0071906.1 MGP_AJ_G0029544.1 mouse_genomes_project 5 62608301 62611006 - Rpl9 protein_coding retained_intron MGP_AJ_T0071907.1 MGP_AJ_G0029544.1 mouse_genomes_project 5 62608541 62610616 - Rpl9 protein_coding retained_intron MGP_AJ_T0008419.1 MGP_AJ_G0006826.1 mouse_genomes_project 5 134205797 134225166 - Gm43091 lincRNA lincRNA MGP_AJ_T0008048.1 MGP_AJ_G0006570.1 mouse_genomes_project 5 7146348 7184465 + lincRNA lincRNA MGP_AJ_T0008357.1 MGP_AJ_G0006790.1 mouse_genomes_project 5 118565684 118572156 - Gm42654 lincRNA lincRNA MGP_AJ_T0008358.1 MGP_AJ_G0006790.1 mouse_genomes_project 5 118565692 118568747 - Gm42654 lincRNA lincRNA MGP_AJ_T0015182.1 MGP_AJ_G0013277.1 mouse_genomes_project 5 139426823 139427227 + processed_pseudogene processed_pseudogene MGP_AJ_T0001872.1 MGP_AJ_G0001786.1 mouse_genomes_project 5 132578541 132579507 - TEC TEC MGP_AJ_T0070315.1 MGP_AJ_G0029269.1 mouse_genomes_project 5 14412935 14418306 + MGP_AJ_P0070315 protein_coding protein_coding MGP_AJ_T0072823.1 MGP_AJ_G0029733.1 mouse_genomes_project 5 94648661 94743566 + MGP_AJ_P0072823 Bmp2k protein_coding protein_coding MGP_AJ_T0072824.1 MGP_AJ_G0029733.1 mouse_genomes_project 5 94648661 94720826 + MGP_AJ_P0072824 Bmp2k protein_coding protein_coding MGP_AJ_T0070435.1 MGP_AJ_G0029293.1 mouse_genomes_project 5 19678983 20209296 + MGP_AJ_P0070435 Lhfpl3 protein_coding protein_coding MGP_AJ_T0070437.1 MGP_AJ_G0029293.1 mouse_genomes_project 5 20031667 20209286 + MGP_AJ_P0070437 Lhfpl3 protein_coding protein_coding MGP_AJ_T0075723.1 MGP_AJ_G0030292.1 mouse_genomes_project 5 142118276 142147269 + MGP_AJ_P0075723 protein_coding protein_coding MGP_AJ_T0073851.1 MGP_AJ_G0029948.1 mouse_genomes_project 5 115309773 115465782 + MGP_AJ_P0073851 Taok3 protein_coding protein_coding MGP_AJ_T0073852.1 MGP_AJ_G0029948.1 mouse_genomes_project 5 115315942 115392909 + MGP_AJ_P0073852 Taok3 protein_coding protein_coding MGP_AJ_T0073853.1 MGP_AJ_G0029948.1 mouse_genomes_project 5 115322783 115384979 + Taok3 protein_coding retained_intron MGP_AJ_T0073854.1 MGP_AJ_G0029948.1 mouse_genomes_project 5 115322783 115465640 + MGP_AJ_P0073854 Taok3 protein_coding protein_coding MGP_AJ_T0073855.1 MGP_AJ_G0029948.1 mouse_genomes_project 5 115322790 115465784 + MGP_AJ_P0073855 Taok3 protein_coding protein_coding MGP_AJ_T0073856.1 MGP_AJ_G0029948.1 mouse_genomes_project 5 115322810 115431764 + Taok3 protein_coding retained_intron MGP_AJ_T0073857.1 MGP_AJ_G0029948.1 mouse_genomes_project 5 115322813 115443041 + MGP_AJ_P0073857 Taok3 protein_coding protein_coding MGP_AJ_T0073858.1 MGP_AJ_G0029948.1 mouse_genomes_project 5 115322836 115376747 + Taok3 protein_coding retained_intron MGP_AJ_T0073859.1 MGP_AJ_G0029948.1 mouse_genomes_project 5 115392890 115419366 + MGP_AJ_P0073859 Taok3 protein_coding protein_coding MGP_AJ_T0073860.1 MGP_AJ_G0029948.1 mouse_genomes_project 5 115430775 115464444 + MGP_AJ_P0073860 Taok3 protein_coding protein_coding MGP_AJ_T0074334.1 MGP_AJ_G0030033.1 mouse_genomes_project 5 121708980 121786435 + MGP_AJ_P0074334 Wdr66 protein_coding protein_coding MGP_AJ_T0074335.1 MGP_AJ_G0030033.1 mouse_genomes_project 5 121710080 121787125 + MGP_AJ_P0074335 Wdr66 protein_coding protein_coding MGP_AJ_T0074336.1 MGP_AJ_G0030033.1 mouse_genomes_project 5 121730252 121757778 + Wdr66 protein_coding retained_intron MGP_AJ_T0074337.1 MGP_AJ_G0030033.1 mouse_genomes_project 5 121730252 121753808 + MGP_AJ_P0074337 Wdr66 protein_coding protein_coding MGP_AJ_T0074338.1 MGP_AJ_G0030033.1 mouse_genomes_project 5 121732114 121757729 + Wdr66 protein_coding retained_intron MGP_AJ_T0074339.1 MGP_AJ_G0030033.1 mouse_genomes_project 5 121736740 121738194 + Wdr66 protein_coding retained_intron MGP_AJ_T0074340.1 MGP_AJ_G0030033.1 mouse_genomes_project 5 121750002 121786435 + MGP_AJ_P0074340 Wdr66 protein_coding nonsense_mediated_decay MGP_AJ_T0074341.1 MGP_AJ_G0030033.1 mouse_genomes_project 5 121753894 121786271 + MGP_AJ_P0074341 Wdr66 protein_coding protein_coding MGP_AJ_T0074342.1 MGP_AJ_G0030033.1 mouse_genomes_project 5 121762490 121786290 + Wdr66 protein_coding retained_intron MGP_AJ_T0015132.1 MGP_AJ_G0013227.1 mouse_genomes_project 5 113025471 113025816 - processed_pseudogene processed_pseudogene MGP_AJ_T0073060.1 MGP_AJ_G0029792.1 mouse_genomes_project 5 103677277 103715440 + MGP_AJ_P0073060 Zfp326 protein_coding protein_coding MGP_AJ_T0073061.1 MGP_AJ_G0029792.1 mouse_genomes_project 5 103677280 103716478 + Zfp326 protein_coding retained_intron MGP_AJ_T0073062.1 MGP_AJ_G0029792.1 mouse_genomes_project 5 103677280 103688740 + Zfp326 protein_coding retained_intron MGP_AJ_T0073063.1 MGP_AJ_G0029792.1 mouse_genomes_project 5 103677280 103716478 + MGP_AJ_P0073063 Zfp326 protein_coding protein_coding MGP_AJ_T0073064.1 MGP_AJ_G0029792.1 mouse_genomes_project 5 103677288 103715837 + MGP_AJ_P0073064 Zfp326 protein_coding nonsense_mediated_decay MGP_AJ_T0073065.1 MGP_AJ_G0029792.1 mouse_genomes_project 5 103677653 103686903 + Zfp326 protein_coding processed_transcript MGP_AJ_T0073066.1 MGP_AJ_G0029792.1 mouse_genomes_project 5 103679482 103708228 + Zfp326 protein_coding retained_intron MGP_AJ_T0073067.1 MGP_AJ_G0029792.1 mouse_genomes_project 5 103691660 103697155 + Zfp326 protein_coding retained_intron MGP_AJ_T0073068.1 MGP_AJ_G0029792.1 mouse_genomes_project 5 103705566 103708641 + Zfp326 protein_coding retained_intron MGP_AJ_T0070814.1 MGP_AJ_G0029366.1 mouse_genomes_project 5 27935325 27943212 + MGP_AJ_P0070814 Emilin1 protein_coding protein_coding MGP_AJ_T0070815.1 MGP_AJ_G0029366.1 mouse_genomes_project 5 27935662 27942801 + Emilin1 protein_coding retained_intron MGP_AJ_T0070816.1 MGP_AJ_G0029366.1 mouse_genomes_project 5 27941856 27942985 + Emilin1 protein_coding retained_intron MGP_AJ_T0001629.1 MGP_AJ_G0001545.1 mouse_genomes_project 5 62185434 62187733 + TEC TEC MGP_AJ_T0001628.1 MGP_AJ_G0001544.1 mouse_genomes_project 5 62006715 62008428 + TEC TEC MGP_AJ_T0008466.1 MGP_AJ_G0006865.1 mouse_genomes_project 5 148323006 148389381 - 5730422E09Rik lincRNA lincRNA MGP_AJ_T0008467.1 MGP_AJ_G0006865.1 mouse_genomes_project 5 148323010 148326855 - 5730422E09Rik lincRNA lincRNA MGP_AJ_T0008316.1 MGP_AJ_G0006759.1 mouse_genomes_project 5 111267518 111277804 + Gm43095 lincRNA lincRNA MGP_AJ_T0099070.1 MGP_AJ_G0037043.1 mouse_genomes_project 5 149999971 150001752 + Gm43807 sense_intronic sense_intronic MGP_AJ_T0101318.1 MGP_AJ_G0039284.1 mouse_genomes_project 5 145995163 145995292 + Gm23202 snoRNA snoRNA MGP_AJ_T0001508.1 MGP_AJ_G0001426.1 mouse_genomes_project 5 31645948 31648357 + TEC TEC MGP_AJ_T0075456.1 MGP_AJ_G0030237.1 mouse_genomes_project 5 137072821 137073827 + MGP_AJ_P0075456 unknown_likely_coding unknown_likely_coding MGP_AJ_T0014937.1 MGP_AJ_G0013032.1 mouse_genomes_project 5 30398376 30399418 + processed_pseudogene processed_pseudogene MGP_AJ_T0075126.1 MGP_AJ_G0030171.1 mouse_genomes_project 5 134713832 134733590 - MGP_AJ_P0075126 Orai2 protein_coding protein_coding MGP_AJ_T0075127.1 MGP_AJ_G0030171.1 mouse_genomes_project 5 134713837 134733505 - MGP_AJ_P0075127 Orai2 protein_coding protein_coding MGP_AJ_T0075128.1 MGP_AJ_G0030171.1 mouse_genomes_project 5 134717077 134733511 - MGP_AJ_P0075128 Orai2 protein_coding protein_coding MGP_AJ_T0075129.1 MGP_AJ_G0030171.1 mouse_genomes_project 5 134729188 134733510 - Orai2 protein_coding retained_intron MGP_AJ_T0014886.1 MGP_AJ_G0012981.1 mouse_genomes_project 5 18631892 18632532 + processed_pseudogene processed_pseudogene MGP_AJ_T0074724.1 MGP_AJ_G0030100.1 mouse_genomes_project 5 128308609 128322428 - MGP_AJ_P0074724 Phkg1 protein_coding protein_coding MGP_AJ_T0074725.1 MGP_AJ_G0030100.1 mouse_genomes_project 5 128311069 128344506 - MGP_AJ_P0074725 Phkg1 protein_coding protein_coding MGP_AJ_T0074726.1 MGP_AJ_G0030100.1 mouse_genomes_project 5 128311074 128313787 - Phkg1 protein_coding retained_intron MGP_AJ_T0074727.1 MGP_AJ_G0030100.1 mouse_genomes_project 5 128313555 128315678 - Phkg1 protein_coding processed_transcript MGP_AJ_T0074728.1 MGP_AJ_G0030100.1 mouse_genomes_project 5 128320912 128322452 - Phkg1 protein_coding retained_intron MGP_AJ_T0014998.1 MGP_AJ_G0013093.1 mouse_genomes_project 5 58055147 58055916 - processed_pseudogene processed_pseudogene MGP_AJ_T0001724.1 MGP_AJ_G0001639.1 mouse_genomes_project 5 94585333 94585853 + TEC TEC MGP_AJ_T0071576.1 MGP_AJ_G0029488.1 mouse_genomes_project 5 40685564 40793572 + MGP_AJ_P0071576 C1qtnf7 protein_coding protein_coding MGP_AJ_T0071577.1 MGP_AJ_G0029488.1 mouse_genomes_project 5 40685788 40784443 + MGP_AJ_P0071577 C1qtnf7 protein_coding protein_coding MGP_AJ_T0071578.1 MGP_AJ_G0029488.1 mouse_genomes_project 5 40777092 40791355 + MGP_AJ_P0071578 C1qtnf7 protein_coding protein_coding MGP_AJ_T0004736.1 MGP_AJ_G0004095.1 mouse_genomes_project 5 89755844 89769139 + Gm43599 antisense antisense MGP_AJ_T0010717.1 MGP_AJ_G0008839.1 mouse_genomes_project 5 133737915 133738030 + Gm25315 miRNA miRNA MGP_AJ_T0011605.1 MGP_AJ_G0009727.1 mouse_genomes_project 5 109364797 109364908 - Gm27602 misc_RNA misc_RNA MGP_AJ_T0001446.1 MGP_AJ_G0001367.1 mouse_genomes_project 5 7578101 7580225 - TEC TEC MGP_AJ_T0001878.1 MGP_AJ_G0001791.1 mouse_genomes_project 5 133452569 133454191 - TEC TEC MGP_AJ_T0015067.1 MGP_AJ_G0013162.1 mouse_genomes_project 5 89200575 89200953 - processed_pseudogene processed_pseudogene MGP_AJ_T0072144.1 MGP_AJ_G0029583.1 mouse_genomes_project 5 69881151 69904433 + MGP_AJ_P0072144 Nipal1 protein_coding protein_coding MGP_AJ_T0072145.1 MGP_AJ_G0029583.1 mouse_genomes_project 5 69881169 69900979 + MGP_AJ_P0072145 Nipal1 protein_coding protein_coding MGP_AJ_T0072146.1 MGP_AJ_G0029583.1 mouse_genomes_project 5 69881198 69892493 + Nipal1 protein_coding retained_intron MGP_AJ_T0008157.1 MGP_AJ_G0006648.1 mouse_genomes_project 5 61664812 61678590 - 1700027F09Rik lincRNA lincRNA MGP_AJ_T0073097.1 MGP_AJ_G0029797.1 mouse_genomes_project 5 104787043 104807338 + MGP_AJ_P0073097 Cdc7 protein_coding protein_coding MGP_AJ_T0073098.1 MGP_AJ_G0029797.1 mouse_genomes_project 5 104787043 104807339 + MGP_AJ_P0073098 Cdc7 protein_coding protein_coding MGP_AJ_T0073099.1 MGP_AJ_G0029797.1 mouse_genomes_project 5 104787102 104807339 + MGP_AJ_P0073099 Cdc7 protein_coding protein_coding MGP_AJ_T0073100.1 MGP_AJ_G0029797.1 mouse_genomes_project 5 104787113 104807339 + Cdc7 protein_coding retained_intron MGP_AJ_T0073101.1 MGP_AJ_G0029797.1 mouse_genomes_project 5 104787282 104807338 + MGP_AJ_P0073101 Cdc7 protein_coding protein_coding MGP_AJ_T0073102.1 MGP_AJ_G0029797.1 mouse_genomes_project 5 104787739 104806262 + MGP_AJ_P0073102 Cdc7 protein_coding nonsense_mediated_decay MGP_AJ_T0073103.1 MGP_AJ_G0029797.1 mouse_genomes_project 5 104797257 104797904 + Cdc7 protein_coding processed_transcript MGP_AJ_T0073104.1 MGP_AJ_G0029797.1 mouse_genomes_project 5 104797949 104802265 + Cdc7 protein_coding retained_intron MGP_AJ_T0008413.1 MGP_AJ_G0006820.1 mouse_genomes_project 5 129860249 129884135 - Gm42590 lincRNA lincRNA MGP_AJ_T0015070.1 MGP_AJ_G0013165.1 mouse_genomes_project 5 89253485 89254483 + processed_pseudogene processed_pseudogene MGP_AJ_T0008488.1 MGP_AJ_G0006879.1 mouse_genomes_project 5 149834004 149841076 - Gm43597 lincRNA lincRNA MGP_AJ_T0008489.1 MGP_AJ_G0006879.1 mouse_genomes_project 5 149834009 149841039 - Gm43597 lincRNA lincRNA MGP_AJ_T0008490.1 MGP_AJ_G0006879.1 mouse_genomes_project 5 149835971 149840956 - Gm43597 lincRNA lincRNA MGP_AJ_T0008118.1 MGP_AJ_G0006614.1 mouse_genomes_project 5 36498550 36504718 + Gm43454 lincRNA lincRNA MGP_AJ_T0072704.1 MGP_AJ_G0029712.1 mouse_genomes_project 5 89722901 89743963 - MGP_AJ_P0072704 Naaa protein_coding protein_coding MGP_AJ_T0072705.1 MGP_AJ_G0029712.1 mouse_genomes_project 5 89722906 89728583 - Naaa protein_coding retained_intron MGP_AJ_T0072706.1 MGP_AJ_G0029712.1 mouse_genomes_project 5 89723646 89743958 - MGP_AJ_P0072706 Naaa protein_coding protein_coding MGP_AJ_T0072707.1 MGP_AJ_G0029712.1 mouse_genomes_project 5 89724761 89738341 - MGP_AJ_P0072707 Naaa protein_coding protein_coding MGP_AJ_T0072708.1 MGP_AJ_G0029712.1 mouse_genomes_project 5 89741611 89743958 - Naaa protein_coding retained_intron MGP_AJ_T0004846.1 MGP_AJ_G0004171.1 mouse_genomes_project 5 130438184 130448200 + Gm42439 antisense antisense MGP_AJ_T0072774.1 MGP_AJ_G0029724.1 mouse_genomes_project 5 90554965 90640541 + MGP_AJ_P0072774 Sept11 protein_coding protein_coding MGP_AJ_T0072775.1 MGP_AJ_G0029724.1 mouse_genomes_project 5 90554966 90555606 + Sept11 protein_coding retained_intron MGP_AJ_T0072776.1 MGP_AJ_G0029724.1 mouse_genomes_project 5 90554966 90635435 + MGP_AJ_P0072776 Sept11 protein_coding protein_coding MGP_AJ_T0072777.1 MGP_AJ_G0029724.1 mouse_genomes_project 5 90554976 90626914 + MGP_AJ_P0072777 Sept11 protein_coding protein_coding MGP_AJ_T0072778.1 MGP_AJ_G0029724.1 mouse_genomes_project 5 90554979 90642020 + MGP_AJ_P0072778 Sept11 protein_coding protein_coding MGP_AJ_T0072779.1 MGP_AJ_G0029724.1 mouse_genomes_project 5 90555054 90642030 + MGP_AJ_P0072779 Sept11 protein_coding protein_coding MGP_AJ_T0072780.1 MGP_AJ_G0029724.1 mouse_genomes_project 5 90555064 90611232 + MGP_AJ_P0072780 Sept11 protein_coding protein_coding MGP_AJ_T0072781.1 MGP_AJ_G0029724.1 mouse_genomes_project 5 90555099 90641660 + MGP_AJ_P0072781 Sept11 protein_coding protein_coding MGP_AJ_T0072782.1 MGP_AJ_G0029724.1 mouse_genomes_project 5 90611191 90623372 + Sept11 protein_coding retained_intron MGP_AJ_T0071663.1 MGP_AJ_G0029504.1 mouse_genomes_project 5 42846219 42877722 + MGP_AJ_P0071663 Ncapg protein_coding protein_coding MGP_AJ_T0071664.1 MGP_AJ_G0029504.1 mouse_genomes_project 5 42852153 42877301 + Ncapg protein_coding retained_intron MGP_AJ_T0071665.1 MGP_AJ_G0029504.1 mouse_genomes_project 5 42854004 42856172 + Ncapg protein_coding retained_intron MGP_AJ_T0071666.1 MGP_AJ_G0029504.1 mouse_genomes_project 5 42854055 42877247 + Ncapg protein_coding retained_intron MGP_AJ_T0071667.1 MGP_AJ_G0029504.1 mouse_genomes_project 5 42869200 42874096 + Ncapg protein_coding retained_intron MGP_AJ_T0071670.1 MGP_AJ_G0029504.1 mouse_genomes_project 5 42875833 42877244 + Ncapg protein_coding retained_intron MGP_AJ_T0071496.1 MGP_AJ_G0029473.1 mouse_genomes_project 5 35368775 35385216 - Zbtb49 protein_coding processed_transcript MGP_AJ_T0071497.1 MGP_AJ_G0029473.1 mouse_genomes_project 5 35379116 35399485 - MGP_AJ_P0071497 Zbtb49 protein_coding protein_coding MGP_AJ_T0071498.1 MGP_AJ_G0029473.1 mouse_genomes_project 5 35379281 35399441 - MGP_AJ_P0071498 Zbtb49 protein_coding nonsense_mediated_decay MGP_AJ_T0071499.1 MGP_AJ_G0029473.1 mouse_genomes_project 5 35379284 35399453 - MGP_AJ_P0071499 Zbtb49 protein_coding nonsense_mediated_decay MGP_AJ_T0071500.1 MGP_AJ_G0029473.1 mouse_genomes_project 5 35379669 35399453 - MGP_AJ_P0071500 Zbtb49 protein_coding nonsense_mediated_decay MGP_AJ_T0071501.1 MGP_AJ_G0029473.1 mouse_genomes_project 5 35379669 35399455 - MGP_AJ_P0071501 Zbtb49 protein_coding nonsense_mediated_decay MGP_AJ_T0071502.1 MGP_AJ_G0029473.1 mouse_genomes_project 5 35382282 35382832 - MGP_AJ_P0071502 Zbtb49 protein_coding protein_coding MGP_AJ_T0071503.1 MGP_AJ_G0029473.1 mouse_genomes_project 5 35382783 35392580 - MGP_AJ_P0071503 Zbtb49 protein_coding nonsense_mediated_decay MGP_AJ_T0071504.1 MGP_AJ_G0029473.1 mouse_genomes_project 5 35382839 35399459 - MGP_AJ_P0071504 Zbtb49 protein_coding nonsense_mediated_decay MGP_AJ_T0071505.1 MGP_AJ_G0029473.1 mouse_genomes_project 5 35391065 35399482 - MGP_AJ_P0071505 Zbtb49 protein_coding protein_coding MGP_AJ_T0071506.1 MGP_AJ_G0029473.1 mouse_genomes_project 5 35394406 35399452 - Zbtb49 protein_coding retained_intron MGP_AJ_T0075860.1 MGP_AJ_G0030322.1 mouse_genomes_project 5 143797836 143807796 - Smurf1 protein_coding retained_intron MGP_AJ_T0075861.1 MGP_AJ_G0030322.1 mouse_genomes_project 5 143797836 143887682 - MGP_AJ_P0075861 Smurf1 protein_coding protein_coding MGP_AJ_T0075862.1 MGP_AJ_G0030322.1 mouse_genomes_project 5 143797843 143887690 - MGP_AJ_P0075862 Smurf1 protein_coding protein_coding MGP_AJ_T0075863.1 MGP_AJ_G0030322.1 mouse_genomes_project 5 143800430 143887690 - MGP_AJ_P0075863 Smurf1 protein_coding protein_coding MGP_AJ_T0075864.1 MGP_AJ_G0030322.1 mouse_genomes_project 5 143805911 143819336 - MGP_AJ_P0075864 Smurf1 protein_coding protein_coding MGP_AJ_T0015017.1 MGP_AJ_G0013112.1 mouse_genomes_project 5 67784397 67785011 - processed_pseudogene processed_pseudogene MGP_AJ_T0102662.1 MGP_AJ_G0040404.1 mouse_genomes_project 5 150896843 150896931 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0072674.1 MGP_AJ_G0029706.1 mouse_genomes_project 5 89445228 89448058 + Gm1045 protein_coding retained_intron MGP_AJ_T0072675.1 MGP_AJ_G0029706.1 mouse_genomes_project 5 89445228 89453074 + MGP_AJ_P0072675 Gm1045 protein_coding protein_coding MGP_AJ_T0008140.1 MGP_AJ_G0006632.1 mouse_genomes_project 5 49288623 49289835 + Gm43177 lincRNA lincRNA MGP_AJ_T0074821.1 MGP_AJ_G0030119.1 mouse_genomes_project 5 132587825 132644387 + MGP_AJ_P0074821 Gatsl2 protein_coding protein_coding MGP_AJ_T0074822.1 MGP_AJ_G0030119.1 mouse_genomes_project 5 132588121 132644374 + Gatsl2 protein_coding processed_transcript MGP_AJ_T0074823.1 MGP_AJ_G0030119.1 mouse_genomes_project 5 132635053 132637601 + Gatsl2 protein_coding retained_intron MGP_AJ_T0001741.1 MGP_AJ_G0001656.1 mouse_genomes_project 5 102573986 102574354 - TEC TEC MGP_AJ_T0073271.1 MGP_AJ_G0029832.1 mouse_genomes_project 5 107000301 107256108 - MGP_AJ_P0073271 protein_coding protein_coding MGP_AJ_T0070360.1 MGP_AJ_G0029279.1 mouse_genomes_project 5 18130358 18199651 + Gsap protein_coding retained_intron MGP_AJ_T0070361.1 MGP_AJ_G0029279.1 mouse_genomes_project 5 18130370 18232303 + MGP_AJ_P0070361 Gsap protein_coding nonsense_mediated_decay MGP_AJ_T0070362.1 MGP_AJ_G0029279.1 mouse_genomes_project 5 18130392 18232325 + MGP_AJ_P0070362 Gsap protein_coding protein_coding MGP_AJ_T0070363.1 MGP_AJ_G0029279.1 mouse_genomes_project 5 18130402 18132476 + Gsap protein_coding processed_transcript MGP_AJ_T0070364.1 MGP_AJ_G0029279.1 mouse_genomes_project 5 18130415 18191675 + MGP_AJ_P0070364 Gsap protein_coding nonsense_mediated_decay MGP_AJ_T0070365.1 MGP_AJ_G0029279.1 mouse_genomes_project 5 18130416 18229244 + MGP_AJ_P0070365 Gsap protein_coding nonsense_mediated_decay MGP_AJ_T0070366.1 MGP_AJ_G0029279.1 mouse_genomes_project 5 18130416 18229244 + MGP_AJ_P0070366 Gsap protein_coding protein_coding MGP_AJ_T0070367.1 MGP_AJ_G0029279.1 mouse_genomes_project 5 18130466 18207844 + MGP_AJ_P0070367 Gsap protein_coding unknown_likely_coding MGP_AJ_T0070368.1 MGP_AJ_G0029279.1 mouse_genomes_project 5 18191043 18198168 + Gsap protein_coding retained_intron MGP_AJ_T0070369.1 MGP_AJ_G0029279.1 mouse_genomes_project 5 18230390 18255968 + MGP_AJ_P0070369 Gsap protein_coding protein_coding MGP_AJ_T0070370.1 MGP_AJ_G0029279.1 mouse_genomes_project 5 18230470 18255969 + Gsap protein_coding processed_transcript MGP_AJ_T0001776.1 MGP_AJ_G0001691.1 mouse_genomes_project 5 114050407 114052683 + TEC TEC MGP_AJ_T0071189.1 MGP_AJ_G0029422.1 mouse_genomes_project 5 31054212 31086463 - MGP_AJ_P0071189 Nelfa protein_coding protein_coding MGP_AJ_T0071190.1 MGP_AJ_G0029422.1 mouse_genomes_project 5 31069177 31086300 - Nelfa protein_coding retained_intron MGP_AJ_T0072381.1 MGP_AJ_G0029625.1 mouse_genomes_project 5 74565858 74581513 - MGP_AJ_P0072381 Noa1 protein_coding protein_coding MGP_AJ_T0072382.1 MGP_AJ_G0029625.1 mouse_genomes_project 5 74574807 74575744 - Noa1 protein_coding processed_transcript MGP_AJ_T0072383.1 MGP_AJ_G0029625.1 mouse_genomes_project 5 74576408 74581488 - Noa1 protein_coding retained_intron MGP_AJ_T0072384.1 MGP_AJ_G0029625.1 mouse_genomes_project 5 74577035 74579072 - Noa1 protein_coding processed_transcript MGP_AJ_T0075387.1 MGP_AJ_G0030223.1 mouse_genomes_project 5 136751745 136769206 - MGP_AJ_P0075387 Zfp113 protein_coding protein_coding MGP_AJ_T0075388.1 MGP_AJ_G0030223.1 mouse_genomes_project 5 136756710 136766361 - MGP_AJ_P0075388 Zfp113 protein_coding protein_coding MGP_AJ_T0075389.1 MGP_AJ_G0030223.1 mouse_genomes_project 5 136763994 136769162 - Zfp113 protein_coding retained_intron MGP_AJ_T0075390.1 MGP_AJ_G0030223.1 mouse_genomes_project 5 136764402 136769166 - MGP_AJ_P0075390 Zfp113 protein_coding protein_coding MGP_AJ_T0075791.1 MGP_AJ_G0030308.1 mouse_genomes_project 5 142801150 142808392 - MGP_AJ_P0075791 Aimp2 protein_coding protein_coding MGP_AJ_T0075792.1 MGP_AJ_G0030308.1 mouse_genomes_project 5 142801150 142808384 - MGP_AJ_P0075792 Aimp2 protein_coding protein_coding MGP_AJ_T0075793.1 MGP_AJ_G0030308.1 mouse_genomes_project 5 142804534 142808329 - Aimp2 protein_coding retained_intron MGP_AJ_T0075794.1 MGP_AJ_G0030308.1 mouse_genomes_project 5 142804819 142808333 - Aimp2 protein_coding retained_intron MGP_AJ_T0008137.1 MGP_AJ_G0006629.1 mouse_genomes_project 5 43133574 43139160 - 4930405L22Rik lincRNA lincRNA MGP_AJ_T0001835.1 MGP_AJ_G0001749.1 mouse_genomes_project 5 127050789 127052166 - TEC TEC MGP_AJ_T0001879.1 MGP_AJ_G0001792.1 mouse_genomes_project 5 133530358 133533374 - TEC TEC MGP_AJ_T0070311.1 MGP_AJ_G0029265.1 mouse_genomes_project 5 14299658 14308489 + MGP_AJ_P0070311 protein_coding protein_coding MGP_AJ_T0001517.1 MGP_AJ_G0001435.1 mouse_genomes_project 5 35208531 35208826 - TEC TEC MGP_AJ_T0004715.1 MGP_AJ_G0004077.1 mouse_genomes_project 5 65189704 65199198 - 4930425K10Rik antisense antisense MGP_AJ_T0015187.1 MGP_AJ_G0013282.1 mouse_genomes_project 5 142094503 142094885 - processed_pseudogene processed_pseudogene MGP_AJ_T0001454.1 MGP_AJ_G0001375.1 mouse_genomes_project 5 10452649 10454848 + TEC TEC MGP_AJ_T0015082.1 MGP_AJ_G0013177.1 mouse_genomes_project 5 98204620 98205054 - processed_pseudogene processed_pseudogene MGP_AJ_T0001775.1 MGP_AJ_G0001690.1 mouse_genomes_project 5 113595623 113597855 - TEC TEC MGP_AJ_T0101825.1 MGP_AJ_G0039728.1 mouse_genomes_project 5 71574315 71574772 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0008493.1 MGP_AJ_G0006882.1 mouse_genomes_project 5 150503183 150507750 + Gm42904 lincRNA lincRNA MGP_AJ_T0070371.1 MGP_AJ_G0029280.1 mouse_genomes_project 5 18233560 18361531 - MGP_AJ_P0070371 Ccdc146 protein_coding protein_coding MGP_AJ_T0070372.1 MGP_AJ_G0029280.1 mouse_genomes_project 5 18258662 18361531 - MGP_AJ_P0070372 Ccdc146 protein_coding protein_coding MGP_AJ_T0070373.1 MGP_AJ_G0029280.1 mouse_genomes_project 5 18258945 18273141 - Ccdc146 protein_coding retained_intron MGP_AJ_T0070374.1 MGP_AJ_G0029280.1 mouse_genomes_project 5 18259856 18264435 - Ccdc146 protein_coding retained_intron MGP_AJ_T0070375.1 MGP_AJ_G0029280.1 mouse_genomes_project 5 18264488 18273355 - Ccdc146 protein_coding processed_transcript MGP_AJ_T0099046.1 MGP_AJ_G0037023.1 mouse_genomes_project 5 90193018 90194256 + Gm20500 sense_intronic sense_intronic MGP_AJ_T0098454.1 MGP_AJ_G0036438.1 mouse_genomes_project 5 42157922 42158304 - pseudogene pseudogene MGP_AJ_T0008274.1 MGP_AJ_G0006738.1 mouse_genomes_project 5 106228160 106228635 - Gm42517 lincRNA lincRNA MGP_AJ_T0008453.1 MGP_AJ_G0006854.1 mouse_genomes_project 5 146920859 146924517 + Gm43156 lincRNA lincRNA MGP_AJ_T0015153.1 MGP_AJ_G0013248.1 mouse_genomes_project 5 124281424 124282213 - processed_pseudogene processed_pseudogene MGP_AJ_T0074892.1 MGP_AJ_G0030125.1 mouse_genomes_project 5 133001898 133066790 - MGP_AJ_P0074892 Clip2 protein_coding protein_coding MGP_AJ_T0074893.1 MGP_AJ_G0030125.1 mouse_genomes_project 5 133001902 133066790 - MGP_AJ_P0074893 Clip2 protein_coding protein_coding MGP_AJ_T0074894.1 MGP_AJ_G0030125.1 mouse_genomes_project 5 133027165 133029631 - Clip2 protein_coding retained_intron MGP_AJ_T0102653.1 MGP_AJ_G0040395.1 mouse_genomes_project 5 143950201 143953045 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0071526.1 MGP_AJ_G0029478.1 mouse_genomes_project 5 35534139 35654252 - MGP_AJ_P0071526 Slc2a9 protein_coding protein_coding MGP_AJ_T0071527.1 MGP_AJ_G0029478.1 mouse_genomes_project 5 35534139 35651174 - MGP_AJ_P0071527 Slc2a9 protein_coding protein_coding MGP_AJ_T0071528.1 MGP_AJ_G0029478.1 mouse_genomes_project 5 35534140 35663113 - MGP_AJ_P0071528 Slc2a9 protein_coding protein_coding MGP_AJ_T0071529.1 MGP_AJ_G0029478.1 mouse_genomes_project 5 35534172 35673269 - MGP_AJ_P0071529 Slc2a9 protein_coding protein_coding MGP_AJ_T0071530.1 MGP_AJ_G0029478.1 mouse_genomes_project 5 35534559 35674218 - MGP_AJ_P0071530 Slc2a9 protein_coding protein_coding MGP_AJ_T0071531.1 MGP_AJ_G0029478.1 mouse_genomes_project 5 35534559 35651026 - MGP_AJ_P0071531 Slc2a9 protein_coding nonsense_mediated_decay MGP_AJ_T0071532.1 MGP_AJ_G0029478.1 mouse_genomes_project 5 35536003 35650999 - MGP_AJ_P0071532 Slc2a9 protein_coding protein_coding MGP_AJ_T0071533.1 MGP_AJ_G0029478.1 mouse_genomes_project 5 35567792 35651050 - MGP_AJ_P0071533 Slc2a9 protein_coding protein_coding MGP_AJ_T0071534.1 MGP_AJ_G0029478.1 mouse_genomes_project 5 35595182 35620488 - Slc2a9 protein_coding processed_transcript MGP_AJ_T0071535.1 MGP_AJ_G0029478.1 mouse_genomes_project 5 35620308 35673196 - MGP_AJ_P0071535 Slc2a9 protein_coding protein_coding MGP_AJ_T0071536.1 MGP_AJ_G0029478.1 mouse_genomes_project 5 35646398 35673278 - Slc2a9 protein_coding processed_transcript MGP_AJ_T0071537.1 MGP_AJ_G0029478.1 mouse_genomes_project 5 35653858 35663086 - Slc2a9 protein_coding retained_intron MGP_AJ_T0014966.1 MGP_AJ_G0013061.1 mouse_genomes_project 5 45147827 45148163 + processed_pseudogene processed_pseudogene MGP_AJ_T0014864.1 MGP_AJ_G0012959.1 mouse_genomes_project 5 9517104 9518674 - processed_pseudogene processed_pseudogene MGP_AJ_T0100058.1 MGP_AJ_G0038024.1 mouse_genomes_project 5 124963563 124963670 - Gm24839 snRNA snRNA MGP_AJ_T0004685.1 MGP_AJ_G0004053.1 mouse_genomes_project 5 41274582 41276654 + Gm16401 antisense antisense MGP_AJ_T0004686.1 MGP_AJ_G0004053.1 mouse_genomes_project 5 41274582 41276656 + Gm16401 antisense antisense MGP_AJ_T0014923.1 MGP_AJ_G0013018.1 mouse_genomes_project 5 26711712 26712004 + processed_pseudogene processed_pseudogene MGP_AJ_T0001533.1 MGP_AJ_G0001451.1 mouse_genomes_project 5 41379172 41382630 - TEC TEC MGP_AJ_T0014892.1 MGP_AJ_G0012987.1 mouse_genomes_project 5 19500607 19500903 + processed_pseudogene processed_pseudogene MGP_AJ_T0015188.1 MGP_AJ_G0013283.1 mouse_genomes_project 5 142385111 142386160 + processed_pseudogene processed_pseudogene MGP_AJ_T0014863.1 MGP_AJ_G0012958.1 mouse_genomes_project 5 9328473 9329236 - processed_pseudogene processed_pseudogene MGP_AJ_T0074630.1 MGP_AJ_G0030083.1 mouse_genomes_project 5 126039124 126060836 - MGP_AJ_P0074630 Slc15a4 protein_coding protein_coding MGP_AJ_T0074631.1 MGP_AJ_G0030083.1 mouse_genomes_project 5 126039127 126060646 - MGP_AJ_P0074631 Slc15a4 protein_coding nonsense_mediated_decay MGP_AJ_T0074632.1 MGP_AJ_G0030083.1 mouse_genomes_project 5 126039127 126060838 - MGP_AJ_P0074632 Slc15a4 protein_coding nonsense_mediated_decay MGP_AJ_T0074633.1 MGP_AJ_G0030083.1 mouse_genomes_project 5 126040116 126048080 - MGP_AJ_P0074633 Slc15a4 protein_coding protein_coding MGP_AJ_T0074634.1 MGP_AJ_G0030083.1 mouse_genomes_project 5 126045329 126077204 - MGP_AJ_P0074634 Slc15a4 protein_coding nonsense_mediated_decay MGP_AJ_T0074635.1 MGP_AJ_G0030083.1 mouse_genomes_project 5 126047180 126048007 - Slc15a4 protein_coding processed_transcript MGP_AJ_T0074636.1 MGP_AJ_G0030083.1 mouse_genomes_project 5 126047180 126048007 - Slc15a4 protein_coding processed_transcript MGP_AJ_T0074637.1 MGP_AJ_G0030083.1 mouse_genomes_project 5 126047206 126052755 - MGP_AJ_P0074637 Slc15a4 protein_coding protein_coding MGP_AJ_T0074638.1 MGP_AJ_G0030083.1 mouse_genomes_project 5 126048005 126060303 - Slc15a4 protein_coding processed_transcript MGP_AJ_T0074639.1 MGP_AJ_G0030083.1 mouse_genomes_project 5 126052196 126077221 - MGP_AJ_P0074639 Slc15a4 protein_coding protein_coding MGP_AJ_T0074640.1 MGP_AJ_G0030083.1 mouse_genomes_project 5 126057849 126060801 - Slc15a4 protein_coding retained_intron MGP_AJ_T0015221.1 MGP_AJ_G0013316.1 mouse_genomes_project 5 149743976 149745513 - processed_pseudogene processed_pseudogene MGP_AJ_T0075524.1 MGP_AJ_G0030248.1 mouse_genomes_project 5 138124599 138158952 - Adap1 protein_coding processed_transcript MGP_AJ_T0075525.1 MGP_AJ_G0030248.1 mouse_genomes_project 5 138124599 138179022 - MGP_AJ_P0075525 Adap1 protein_coding protein_coding MGP_AJ_T0075526.1 MGP_AJ_G0030248.1 mouse_genomes_project 5 138125499 138155785 - Adap1 protein_coding processed_transcript MGP_AJ_T0075527.1 MGP_AJ_G0030248.1 mouse_genomes_project 5 138125581 138158924 - Adap1 protein_coding processed_transcript MGP_AJ_T0075528.1 MGP_AJ_G0030248.1 mouse_genomes_project 5 138125653 138127365 - Adap1 protein_coding retained_intron MGP_AJ_T0075529.1 MGP_AJ_G0030248.1 mouse_genomes_project 5 138133359 138160232 - Adap1 protein_coding retained_intron MGP_AJ_T0014985.1 MGP_AJ_G0013080.1 mouse_genomes_project 5 54447269 54448005 + processed_pseudogene processed_pseudogene MGP_AJ_T0004688.1 MGP_AJ_G0004055.1 mouse_genomes_project 5 41391956 41409726 + Gm42984 antisense antisense MGP_AJ_T0001825.1 MGP_AJ_G0001739.1 mouse_genomes_project 5 123005259 123006623 + TEC TEC MGP_AJ_T0070218.1 MGP_AJ_G0029248.1 mouse_genomes_project 5 5342267 5470145 - MGP_AJ_P0070218 Rundc3b protein_coding protein_coding MGP_AJ_T0070219.1 MGP_AJ_G0029248.1 mouse_genomes_project 5 5344201 5470145 - MGP_AJ_P0070219 Rundc3b protein_coding protein_coding MGP_AJ_T0001722.1 MGP_AJ_G0001637.1 mouse_genomes_project 5 94523614 94526852 + TEC TEC MGP_AJ_T0075788.1 MGP_AJ_G0030307.1 mouse_genomes_project 5 142789235 142793516 - MGP_AJ_P0075788 Ankrd61 protein_coding protein_coding MGP_AJ_T0075789.1 MGP_AJ_G0030307.1 mouse_genomes_project 5 142789235 142793479 - MGP_AJ_P0075789 Ankrd61 protein_coding protein_coding MGP_AJ_T0075790.1 MGP_AJ_G0030307.1 mouse_genomes_project 5 142789237 142796118 - MGP_AJ_P0075790 Ankrd61 protein_coding protein_coding MGP_AJ_T0071174.1 MGP_AJ_G0029421.1 mouse_genomes_project 5 30975581 31054263 + MGP_AJ_P0071174 protein_coding protein_coding MGP_AJ_T0071175.1 MGP_AJ_G0029421.1 mouse_genomes_project 5 30975600 31028221 + MGP_AJ_P0071175 protein_coding protein_coding MGP_AJ_T0071176.1 MGP_AJ_G0029421.1 mouse_genomes_project 5 30975685 31001553 + MGP_AJ_P0071176 protein_coding protein_coding MGP_AJ_T0071177.1 MGP_AJ_G0029421.1 mouse_genomes_project 5 30998482 31054272 + MGP_AJ_P0071177 protein_coding nonsense_mediated_decay MGP_AJ_T0071178.1 MGP_AJ_G0029421.1 mouse_genomes_project 5 30998482 31032996 + MGP_AJ_P0071178 protein_coding protein_coding MGP_AJ_T0071179.1 MGP_AJ_G0029421.1 mouse_genomes_project 5 30998482 31054272 + MGP_AJ_P0071179 protein_coding nonsense_mediated_decay MGP_AJ_T0071180.1 MGP_AJ_G0029421.1 mouse_genomes_project 5 30998482 31054263 + MGP_AJ_P0071180 protein_coding protein_coding MGP_AJ_T0071181.1 MGP_AJ_G0029421.1 mouse_genomes_project 5 30998511 31052009 + MGP_AJ_P0071181 protein_coding protein_coding MGP_AJ_T0071182.1 MGP_AJ_G0029421.1 mouse_genomes_project 5 30998566 31051792 + MGP_AJ_P0071182 protein_coding nonsense_mediated_decay MGP_AJ_T0071183.1 MGP_AJ_G0029421.1 mouse_genomes_project 5 31016335 31033004 + MGP_AJ_P0071183 protein_coding protein_coding MGP_AJ_T0071184.1 MGP_AJ_G0029421.1 mouse_genomes_project 5 31033931 31035793 + protein_coding retained_intron MGP_AJ_T0071185.1 MGP_AJ_G0029421.1 mouse_genomes_project 5 31034865 31051723 + MGP_AJ_P0071185 protein_coding nonsense_mediated_decay MGP_AJ_T0071186.1 MGP_AJ_G0029421.1 mouse_genomes_project 5 31041793 31047974 + protein_coding retained_intron MGP_AJ_T0071187.1 MGP_AJ_G0029421.1 mouse_genomes_project 5 31041807 31043995 + protein_coding retained_intron MGP_AJ_T0071188.1 MGP_AJ_G0029421.1 mouse_genomes_project 5 31048204 31051392 + protein_coding retained_intron MGP_AJ_T0015044.1 MGP_AJ_G0013139.1 mouse_genomes_project 5 80558603 80559471 - processed_pseudogene processed_pseudogene MGP_AJ_T0074132.1 MGP_AJ_G0030005.1 mouse_genomes_project 5 120273946 120279676 - Cux2 protein_coding retained_intron MGP_AJ_T0074133.1 MGP_AJ_G0030005.1 mouse_genomes_project 5 120274233 120343688 - MGP_AJ_P0074133 Cux2 protein_coding protein_coding MGP_AJ_T0074134.1 MGP_AJ_G0030005.1 mouse_genomes_project 5 120286676 120287912 - Cux2 protein_coding retained_intron MGP_AJ_T0074135.1 MGP_AJ_G0030005.1 mouse_genomes_project 5 120293391 120329136 - Cux2 protein_coding processed_transcript MGP_AJ_T0074136.1 MGP_AJ_G0030005.1 mouse_genomes_project 5 120293397 120309609 - Cux2 protein_coding processed_transcript MGP_AJ_T0074137.1 MGP_AJ_G0030005.1 mouse_genomes_project 5 120299070 120463872 - MGP_AJ_P0074137 Cux2 protein_coding protein_coding MGP_AJ_T0074138.1 MGP_AJ_G0030005.1 mouse_genomes_project 5 120301737 120416552 - MGP_AJ_P0074138 Cux2 protein_coding protein_coding MGP_AJ_T0074139.1 MGP_AJ_G0030005.1 mouse_genomes_project 5 120309636 120330783 - Cux2 protein_coding processed_transcript MGP_AJ_T0074140.1 MGP_AJ_G0030005.1 mouse_genomes_project 5 120338806 120461668 - Cux2 protein_coding processed_transcript MGP_AJ_T0099985.1 MGP_AJ_G0037951.1 mouse_genomes_project 5 3992072 3992223 - Gm24525 snRNA snRNA MGP_AJ_T0001466.1 MGP_AJ_G0001387.1 mouse_genomes_project 5 13504333 13505326 + TEC TEC MGP_AJ_T0001810.1 MGP_AJ_G0001725.1 mouse_genomes_project 5 120978265 120978827 - TEC TEC MGP_AJ_T0072253.1 MGP_AJ_G0029602.1 mouse_genomes_project 5 71848697 71941401 - MGP_AJ_P0072253 Lnx1 protein_coding protein_coding MGP_AJ_T0072254.1 MGP_AJ_G0029602.1 mouse_genomes_project 5 71848697 71933586 - MGP_AJ_P0072254 Lnx1 protein_coding protein_coding MGP_AJ_T0072255.1 MGP_AJ_G0029602.1 mouse_genomes_project 5 71848697 71933587 - MGP_AJ_P0072255 Lnx1 protein_coding protein_coding MGP_AJ_T0072256.1 MGP_AJ_G0029602.1 mouse_genomes_project 5 71848929 71933572 - MGP_AJ_P0072256 Lnx1 protein_coding nonsense_mediated_decay MGP_AJ_T0072258.1 MGP_AJ_G0029602.1 mouse_genomes_project 5 71853354 71959321 - MGP_AJ_P0072258 Lnx1 protein_coding protein_coding MGP_AJ_T0072259.1 MGP_AJ_G0029602.1 mouse_genomes_project 5 71853354 71933343 - MGP_AJ_P0072259 Lnx1 protein_coding protein_coding MGP_AJ_T0072260.1 MGP_AJ_G0029602.1 mouse_genomes_project 5 71853354 71933514 - MGP_AJ_P0072260 Lnx1 protein_coding protein_coding MGP_AJ_T0072261.1 MGP_AJ_G0029602.1 mouse_genomes_project 5 71853354 71933587 - MGP_AJ_P0072261 Lnx1 protein_coding protein_coding MGP_AJ_T0072262.1 MGP_AJ_G0029602.1 mouse_genomes_project 5 71854026 71879694 - MGP_AJ_P0072262 Lnx1 protein_coding protein_coding MGP_AJ_T0073861.1 MGP_AJ_G0029949.1 mouse_genomes_project 5 115473157 115478471 - MGP_AJ_P0073861 Pebp1 protein_coding protein_coding MGP_AJ_T0073862.1 MGP_AJ_G0029949.1 mouse_genomes_project 5 115473642 115478429 - MGP_AJ_P0073862 Pebp1 protein_coding protein_coding MGP_AJ_T0073863.1 MGP_AJ_G0029949.1 mouse_genomes_project 5 115474193 115478414 - MGP_AJ_P0073863 Pebp1 protein_coding nonsense_mediated_decay MGP_AJ_T0073864.1 MGP_AJ_G0029949.1 mouse_genomes_project 5 115476639 115478371 - Pebp1 protein_coding retained_intron MGP_AJ_T0001570.1 MGP_AJ_G0001487.1 mouse_genomes_project 5 46168072 46170616 - TEC TEC MGP_AJ_T0072693.1 MGP_AJ_G0029709.1 mouse_genomes_project 5 89599078 89664799 + MGP_AJ_P0072693 Uso1 protein_coding protein_coding MGP_AJ_T0072694.1 MGP_AJ_G0029709.1 mouse_genomes_project 5 89599086 89664802 + MGP_AJ_P0072694 Uso1 protein_coding protein_coding MGP_AJ_T0072695.1 MGP_AJ_G0029709.1 mouse_genomes_project 5 89599087 89646074 + Uso1 protein_coding retained_intron MGP_AJ_T0072696.1 MGP_AJ_G0029709.1 mouse_genomes_project 5 89599106 89664800 + MGP_AJ_P0072696 Uso1 protein_coding nonsense_mediated_decay MGP_AJ_T0072697.1 MGP_AJ_G0029709.1 mouse_genomes_project 5 89643407 89664779 + Uso1 protein_coding processed_transcript MGP_AJ_T0073916.1 MGP_AJ_G0029960.1 mouse_genomes_project 5 116441091 116462064 + MGP_AJ_P0073916 2410131K14Rik protein_coding protein_coding MGP_AJ_T0001639.1 MGP_AJ_G0001555.1 mouse_genomes_project 5 62846650 62849581 + TEC TEC MGP_AJ_T0075188.1 MGP_AJ_G0030181.1 mouse_genomes_project 5 135559913 135569551 + MGP_AJ_P0075188 Plod3 protein_coding protein_coding MGP_AJ_T0075189.1 MGP_AJ_G0030181.1 mouse_genomes_project 5 135560272 135564992 + Plod3 protein_coding retained_intron MGP_AJ_T0075190.1 MGP_AJ_G0030181.1 mouse_genomes_project 5 135560370 135565609 + Plod3 protein_coding retained_intron MGP_AJ_T0075191.1 MGP_AJ_G0030181.1 mouse_genomes_project 5 135563209 135567083 + Plod3 protein_coding retained_intron MGP_AJ_T0075192.1 MGP_AJ_G0030181.1 mouse_genomes_project 5 135563405 135564992 + Plod3 protein_coding retained_intron MGP_AJ_T0075193.1 MGP_AJ_G0030181.1 mouse_genomes_project 5 135564527 135568081 + MGP_AJ_P0075193 Plod3 protein_coding protein_coding MGP_AJ_T0072551.1 MGP_AJ_G0029663.1 mouse_genomes_project 5 85317236 85320648 + MGP_AJ_P0072551 2310003L06Rik protein_coding protein_coding MGP_AJ_T0073274.1 MGP_AJ_G0029835.1 mouse_genomes_project 5 107089748 107125574 - MGP_AJ_P0073274 protein_coding protein_coding MGP_AJ_T0018210.1 MGP_AJ_G0015596.1 mouse_genomes_project 5 149069727 149086388 + 4930500F04Rik processed_transcript lincRNA MGP_AJ_T0018211.1 MGP_AJ_G0015596.1 mouse_genomes_project 5 149069945 149086384 + 4930500F04Rik processed_transcript lincRNA MGP_AJ_T0018212.1 MGP_AJ_G0015596.1 mouse_genomes_project 5 149074394 149076501 + 4930500F04Rik processed_transcript retained_intron MGP_AJ_T0008050.1 MGP_AJ_G0006572.1 mouse_genomes_project 5 10591956 10646297 - Gm43716 lincRNA lincRNA MGP_AJ_T0073146.1 MGP_AJ_G0029808.1 mouse_genomes_project 5 105551733 105560879 - MGP_AJ_P0073146 Gfi1 protein_coding protein_coding MGP_AJ_T0073147.1 MGP_AJ_G0029808.1 mouse_genomes_project 5 105552291 105559035 - MGP_AJ_P0073147 Gfi1 protein_coding protein_coding MGP_AJ_T0073148.1 MGP_AJ_G0029808.1 mouse_genomes_project 5 105552807 105559440 - MGP_AJ_P0073148 Gfi1 protein_coding unknown_likely_coding MGP_AJ_T0073149.1 MGP_AJ_G0029808.1 mouse_genomes_project 5 105556673 105561110 - MGP_AJ_P0073149 Gfi1 protein_coding protein_coding MGP_AJ_T0008469.1 MGP_AJ_G0006867.1 mouse_genomes_project 5 148347615 148356889 + Gm42788 lincRNA lincRNA MGP_AJ_T0072831.1 MGP_AJ_G0029735.1 mouse_genomes_project 5 95035752 95045886 - MGP_AJ_P0072831 Naa11 protein_coding protein_coding MGP_AJ_T0071703.1 MGP_AJ_G0029507.1 mouse_genomes_project 5 45508725 45563308 + 5730480H06Rik protein_coding processed_transcript MGP_AJ_T0071704.1 MGP_AJ_G0029507.1 mouse_genomes_project 5 45555431 45571932 + MGP_AJ_P0071704 5730480H06Rik protein_coding protein_coding MGP_AJ_T0071705.1 MGP_AJ_G0029507.1 mouse_genomes_project 5 45555431 45571932 + MGP_AJ_P0071705 5730480H06Rik protein_coding protein_coding MGP_AJ_T0071706.1 MGP_AJ_G0029507.1 mouse_genomes_project 5 45555535 45571933 + MGP_AJ_P0071706 5730480H06Rik protein_coding nonsense_mediated_decay MGP_AJ_T0071707.1 MGP_AJ_G0029507.1 mouse_genomes_project 5 45557536 45578704 + MGP_AJ_P0071707 5730480H06Rik protein_coding nonsense_mediated_decay MGP_AJ_T0071708.1 MGP_AJ_G0029507.1 mouse_genomes_project 5 45563221 45571643 + 5730480H06Rik protein_coding retained_intron MGP_AJ_T0071716.1 MGP_AJ_G0029507.1 mouse_genomes_project 5 45575923 45581328 + 5730480H06Rik protein_coding retained_intron MGP_AJ_T0071717.1 MGP_AJ_G0029507.1 mouse_genomes_project 5 45578663 45597366 + 5730480H06Rik protein_coding retained_intron MGP_AJ_T0071719.1 MGP_AJ_G0029507.1 mouse_genomes_project 5 45579750 45597395 + 5730480H06Rik protein_coding processed_transcript MGP_AJ_T0004888.1 MGP_AJ_G0004199.1 mouse_genomes_project 5 148137500 148139777 - Gm15410 antisense antisense MGP_AJ_T0014967.1 MGP_AJ_G0013062.1 mouse_genomes_project 5 45836157 45837522 + processed_pseudogene processed_pseudogene MGP_AJ_T0008349.1 MGP_AJ_G0006784.1 mouse_genomes_project 5 117866060 117878891 + Gm16064 lincRNA lincRNA MGP_AJ_T0011601.1 MGP_AJ_G0009723.1 mouse_genomes_project 5 98120129 98120267 + Gm28030 misc_RNA misc_RNA MGP_AJ_T0070613.1 MGP_AJ_G0029327.1 mouse_genomes_project 5 22245884 22418870 - MGP_AJ_P0070613 Kmt2c protein_coding unknown_likely_coding MGP_AJ_T0070614.1 MGP_AJ_G0029327.1 mouse_genomes_project 5 22245893 22274084 - MGP_AJ_P0070614 Kmt2c protein_coding protein_coding MGP_AJ_T0070615.1 MGP_AJ_G0029327.1 mouse_genomes_project 5 22246521 22283631 - MGP_AJ_P0070615 Kmt2c protein_coding protein_coding MGP_AJ_T0070616.1 MGP_AJ_G0029327.1 mouse_genomes_project 5 22247704 22478648 - MGP_AJ_P0070616 Kmt2c protein_coding protein_coding MGP_AJ_T0070617.1 MGP_AJ_G0029327.1 mouse_genomes_project 5 22249748 22255432 - Kmt2c protein_coding retained_intron MGP_AJ_T0070618.1 MGP_AJ_G0029327.1 mouse_genomes_project 5 22263101 22267388 - Kmt2c protein_coding retained_intron MGP_AJ_T0070619.1 MGP_AJ_G0029327.1 mouse_genomes_project 5 22290741 22478605 - MGP_AJ_P0070619 Kmt2c protein_coding protein_coding MGP_AJ_T0070620.1 MGP_AJ_G0029327.1 mouse_genomes_project 5 22346331 22478658 - MGP_AJ_P0070620 Kmt2c protein_coding protein_coding MGP_AJ_T0070621.1 MGP_AJ_G0029327.1 mouse_genomes_project 5 22356546 22478686 - Kmt2c protein_coding retained_intron MGP_AJ_T0001735.1 MGP_AJ_G0001650.1 mouse_genomes_project 5 100675444 100677916 - TEC TEC MGP_AJ_T0070566.1 MGP_AJ_G0029316.1 mouse_genomes_project 5 21540488 21552606 - MGP_AJ_P0070566 Abcf2 protein_coding protein_coding MGP_AJ_T0001659.1 MGP_AJ_G0001575.1 mouse_genomes_project 5 63938625 63941145 + TEC TEC MGP_AJ_T0008219.1 MGP_AJ_G0006698.1 mouse_genomes_project 5 94647178 94648337 - Gm9484 lincRNA lincRNA MGP_AJ_T0001609.1 MGP_AJ_G0001526.1 mouse_genomes_project 5 54982704 54984651 + TEC TEC MGP_AJ_T0100016.1 MGP_AJ_G0037982.1 mouse_genomes_project 5 67412650 67412712 - Gm23067 snRNA snRNA MGP_AJ_T0004832.1 MGP_AJ_G0004160.1 mouse_genomes_project 5 122708240 122708952 + Gm42425 antisense antisense MGP_AJ_T0004783.1 MGP_AJ_G0004128.1 mouse_genomes_project 5 113121088 113149820 + Hnf1aos1 antisense antisense MGP_AJ_T0004785.1 MGP_AJ_G0004128.1 mouse_genomes_project 5 113122201 113138131 + Hnf1aos1 antisense antisense MGP_AJ_T0004786.1 MGP_AJ_G0004128.1 mouse_genomes_project 5 113122224 113150013 + Hnf1aos1 antisense antisense MGP_AJ_T0018134.1 MGP_AJ_G0015571.1 mouse_genomes_project 5 33776906 33806939 - Gm42936 processed_transcript processed_transcript MGP_AJ_T0004691.1 MGP_AJ_G0004057.1 mouse_genomes_project 5 42602573 42618300 + Gm42413 antisense antisense MGP_AJ_T0073738.1 MGP_AJ_G0029929.1 mouse_genomes_project 5 113462553 113466478 - MGP_AJ_P0073738 Dynll1 protein_coding protein_coding MGP_AJ_T0073739.1 MGP_AJ_G0029929.1 mouse_genomes_project 5 113463867 113466142 - Dynll1 protein_coding retained_intron MGP_AJ_T0073740.1 MGP_AJ_G0029929.1 mouse_genomes_project 5 113463950 113466391 - MGP_AJ_P0073740 Dynll1 protein_coding protein_coding MGP_AJ_T0073741.1 MGP_AJ_G0029929.1 mouse_genomes_project 5 113465018 113466358 - Dynll1 protein_coding processed_transcript MGP_AJ_T0073742.1 MGP_AJ_G0029929.1 mouse_genomes_project 5 113465743 113466413 - Dynll1 protein_coding retained_intron MGP_AJ_T0010706.1 MGP_AJ_G0008828.1 mouse_genomes_project 5 113824230 113824290 + Mir7030 miRNA miRNA MGP_AJ_T0001691.1 MGP_AJ_G0001606.1 mouse_genomes_project 5 70896907 70897486 - TEC TEC MGP_AJ_T0075584.1 MGP_AJ_G0030262.1 mouse_genomes_project 5 138690178 138693470 - MGP_AJ_P0075584 Psmg3 protein_coding protein_coding MGP_AJ_T0075585.1 MGP_AJ_G0030262.1 mouse_genomes_project 5 138690199 138693428 - MGP_AJ_P0075585 Psmg3 protein_coding protein_coding MGP_AJ_T0075586.1 MGP_AJ_G0030262.1 mouse_genomes_project 5 138691059 138693460 - Psmg3 protein_coding retained_intron MGP_AJ_T0001619.1 MGP_AJ_G0001536.1 mouse_genomes_project 5 55359062 55361479 - TEC TEC MGP_AJ_T0015001.1 MGP_AJ_G0013096.1 mouse_genomes_project 5 58915976 58916632 - processed_pseudogene processed_pseudogene MGP_AJ_T0070659.1 MGP_AJ_G0029338.1 mouse_genomes_project 5 25470333 25480765 - MGP_AJ_P0070659 Shh protein_coding protein_coding MGP_AJ_T0014922.1 MGP_AJ_G0013017.1 mouse_genomes_project 5 26554548 26554905 + processed_pseudogene processed_pseudogene MGP_AJ_T0001569.1 MGP_AJ_G0001486.1 mouse_genomes_project 5 46161764 46162592 - TEC TEC MGP_AJ_T0004769.1 MGP_AJ_G0004117.1 mouse_genomes_project 5 108412837 108414839 - Gm15792 antisense antisense MGP_AJ_T0008091.1 MGP_AJ_G0006599.1 mouse_genomes_project 5 28643170 28644973 - AI839979 lincRNA lincRNA MGP_AJ_T0008092.1 MGP_AJ_G0006599.1 mouse_genomes_project 5 28643680 28644967 - AI839979 lincRNA lincRNA MGP_AJ_T0008424.1 MGP_AJ_G0006828.1 mouse_genomes_project 5 135733530 135745384 - Gm3054 lincRNA lincRNA MGP_AJ_T0001631.1 MGP_AJ_G0001547.1 mouse_genomes_project 5 62625403 62626170 + TEC TEC MGP_AJ_T0014975.1 MGP_AJ_G0013070.1 mouse_genomes_project 5 51313013 51314091 - processed_pseudogene processed_pseudogene MGP_AJ_T0011600.1 MGP_AJ_G0009722.1 mouse_genomes_project 5 98117764 98117833 + Gm27997 misc_RNA misc_RNA MGP_AJ_T0075427.1 MGP_AJ_G0030232.1 mouse_genomes_project 5 136988701 136993084 - MGP_AJ_P0075427 BC037034 protein_coding protein_coding MGP_AJ_T0075428.1 MGP_AJ_G0030232.1 mouse_genomes_project 5 136988703 136992430 - MGP_AJ_P0075428 BC037034 protein_coding protein_coding MGP_AJ_T0075429.1 MGP_AJ_G0030232.1 mouse_genomes_project 5 136988704 136993080 - MGP_AJ_P0075429 BC037034 protein_coding nonsense_mediated_decay MGP_AJ_T0075430.1 MGP_AJ_G0030232.1 mouse_genomes_project 5 136988705 136993123 - BC037034 protein_coding retained_intron MGP_AJ_T0075431.1 MGP_AJ_G0030232.1 mouse_genomes_project 5 136989196 136990037 - MGP_AJ_P0075431 BC037034 protein_coding protein_coding MGP_AJ_T0075432.1 MGP_AJ_G0030232.1 mouse_genomes_project 5 136990659 136991284 - BC037034 protein_coding retained_intron MGP_AJ_T0075433.1 MGP_AJ_G0030232.1 mouse_genomes_project 5 136991342 136992228 - BC037034 protein_coding retained_intron MGP_AJ_T0001720.1 MGP_AJ_G0001635.1 mouse_genomes_project 5 90654343 90656246 - TEC TEC MGP_AJ_T0072924.1 MGP_AJ_G0029756.1 mouse_genomes_project 5 98377681 98417767 - MGP_AJ_P0072924 Hpse protein_coding protein_coding MGP_AJ_T0072925.1 MGP_AJ_G0029756.1 mouse_genomes_project 5 98382753 98417756 - MGP_AJ_P0072925 Hpse protein_coding protein_coding MGP_AJ_T0072488.1 MGP_AJ_G0029648.1 mouse_genomes_project 5 84515871 84530139 - MGP_AJ_P0072488 Ugt2b37 protein_coding protein_coding MGP_AJ_T0008344.1 MGP_AJ_G0006779.1 mouse_genomes_project 5 117161567 117170581 + 4930413E15Rik lincRNA lincRNA MGP_AJ_T0073883.1 MGP_AJ_G0029953.1 mouse_genomes_project 5 115596823 115741237 + Ksr2 protein_coding retained_intron MGP_AJ_T0073884.1 MGP_AJ_G0029953.1 mouse_genomes_project 5 115596823 115962897 + MGP_AJ_P0073884 Ksr2 protein_coding protein_coding MGP_AJ_T0073885.1 MGP_AJ_G0029953.1 mouse_genomes_project 5 115597644 115953429 + MGP_AJ_P0073885 Ksr2 protein_coding unknown_likely_coding MGP_AJ_T0075121.1 MGP_AJ_G0030170.1 mouse_genomes_project 5 134702570 134706937 + MGP_AJ_P0075121 Alkbh4 protein_coding protein_coding MGP_AJ_T0075122.1 MGP_AJ_G0030170.1 mouse_genomes_project 5 134702578 134708037 + MGP_AJ_P0075122 Alkbh4 protein_coding protein_coding MGP_AJ_T0075123.1 MGP_AJ_G0030170.1 mouse_genomes_project 5 134702582 134707203 + MGP_AJ_P0075123 Alkbh4 protein_coding nonsense_mediated_decay MGP_AJ_T0075124.1 MGP_AJ_G0030170.1 mouse_genomes_project 5 134702626 134706928 + MGP_AJ_P0075124 Alkbh4 protein_coding protein_coding MGP_AJ_T0075125.1 MGP_AJ_G0030170.1 mouse_genomes_project 5 134705205 134708040 + MGP_AJ_P0075125 Alkbh4 protein_coding protein_coding MGP_AJ_T0001612.1 MGP_AJ_G0001529.1 mouse_genomes_project 5 55115511 55116978 + TEC TEC MGP_AJ_T0004629.1 MGP_AJ_G0004007.1 mouse_genomes_project 5 194426 195874 - Gm42435 antisense antisense MGP_AJ_T0001845.1 MGP_AJ_G0001759.1 mouse_genomes_project 5 129366545 129368652 - TEC TEC MGP_AJ_T0074969.1 MGP_AJ_G0030140.1 mouse_genomes_project 5 133588535 133590196 + MGP_AJ_P0074969 Dnajc30 protein_coding protein_coding MGP_AJ_T0075649.1 MGP_AJ_G0030277.1 mouse_genomes_project 5 139757845 139889240 - MGP_AJ_P0075649 Card11 protein_coding protein_coding MGP_AJ_T0075650.1 MGP_AJ_G0030277.1 mouse_genomes_project 5 139757847 139767069 - Card11 protein_coding retained_intron MGP_AJ_T0075651.1 MGP_AJ_G0030277.1 mouse_genomes_project 5 139800158 139889129 - Card11 protein_coding retained_intron MGP_AJ_T0001726.1 MGP_AJ_G0001641.1 mouse_genomes_project 5 94697400 94698026 + TEC TEC MGP_AJ_T0001837.1 MGP_AJ_G0001751.1 mouse_genomes_project 5 127984838 127985776 - TEC TEC MGP_AJ_T0001502.1 MGP_AJ_G0001420.1 mouse_genomes_project 5 29780138 29780989 - TEC TEC MGP_AJ_T0015169.1 MGP_AJ_G0013264.1 mouse_genomes_project 5 136457295 136457683 - processed_pseudogene processed_pseudogene MGP_AJ_T0010682.1 MGP_AJ_G0008804.1 mouse_genomes_project 5 63224384 63224458 - Gm25952 miRNA miRNA MGP_AJ_T0072298.1 MGP_AJ_G0029610.1 mouse_genomes_project 5 73462201 73554581 - MGP_AJ_P0072298 Clock protein_coding protein_coding MGP_AJ_T0072299.1 MGP_AJ_G0029610.1 mouse_genomes_project 5 73464479 73554337 - MGP_AJ_P0072299 Clock protein_coding protein_coding MGP_AJ_T0072300.1 MGP_AJ_G0029610.1 mouse_genomes_project 5 73466155 73525434 - MGP_AJ_P0072300 Clock protein_coding protein_coding MGP_AJ_T0072301.1 MGP_AJ_G0029610.1 mouse_genomes_project 5 73484836 73554543 - Clock protein_coding retained_intron MGP_AJ_T0072302.1 MGP_AJ_G0029610.1 mouse_genomes_project 5 73504225 73554561 - Clock protein_coding processed_transcript MGP_AJ_T0072303.1 MGP_AJ_G0029610.1 mouse_genomes_project 5 73523375 73554561 - Clock protein_coding retained_intron MGP_AJ_T0071065.1 MGP_AJ_G0029402.1 mouse_genomes_project 5 29684640 29750990 + MGP_AJ_P0071065 Yes1 protein_coding protein_coding MGP_AJ_T0071066.1 MGP_AJ_G0029402.1 mouse_genomes_project 5 29684839 29753288 + MGP_AJ_P0071066 Yes1 protein_coding protein_coding MGP_AJ_T0071067.1 MGP_AJ_G0029402.1 mouse_genomes_project 5 29684853 29687595 + Yes1 protein_coding retained_intron MGP_AJ_T0071068.1 MGP_AJ_G0029402.1 mouse_genomes_project 5 29711026 29724043 + MGP_AJ_P0071068 Yes1 protein_coding protein_coding MGP_AJ_T0072077.1 MGP_AJ_G0029570.1 mouse_genomes_project 5 66760518 66782972 - MGP_AJ_P0072077 Yipf7 protein_coding protein_coding MGP_AJ_T0072078.1 MGP_AJ_G0029570.1 mouse_genomes_project 5 66763157 66782913 - MGP_AJ_P0072078 Yipf7 protein_coding protein_coding MGP_AJ_T0015204.1 MGP_AJ_G0013299.1 mouse_genomes_project 5 145095921 145096740 + processed_pseudogene processed_pseudogene MGP_AJ_T0071798.1 MGP_AJ_G0029523.1 mouse_genomes_project 5 50907257 50915307 - MGP_AJ_P0071798 Cckar protein_coding protein_coding MGP_AJ_T0071799.1 MGP_AJ_G0029523.1 mouse_genomes_project 5 50913785 50914998 - Cckar protein_coding processed_transcript MGP_AJ_T0074718.1 MGP_AJ_G0030099.1 mouse_genomes_project 5 128291092 128308223 + MGP_AJ_P0074718 Sumf2 protein_coding protein_coding MGP_AJ_T0074719.1 MGP_AJ_G0030099.1 mouse_genomes_project 5 128291117 128298816 + MGP_AJ_P0074719 Sumf2 protein_coding protein_coding MGP_AJ_T0074720.1 MGP_AJ_G0030099.1 mouse_genomes_project 5 128291126 128298906 + Sumf2 protein_coding processed_transcript MGP_AJ_T0074721.1 MGP_AJ_G0030099.1 mouse_genomes_project 5 128291126 128307309 + MGP_AJ_P0074721 Sumf2 protein_coding nonsense_mediated_decay MGP_AJ_T0074722.1 MGP_AJ_G0030099.1 mouse_genomes_project 5 128296581 128306689 + Sumf2 protein_coding processed_transcript MGP_AJ_T0074723.1 MGP_AJ_G0030099.1 mouse_genomes_project 5 128296581 128306689 + Sumf2 protein_coding processed_transcript MGP_AJ_T0015162.1 MGP_AJ_G0013257.1 mouse_genomes_project 5 134456475 134456632 - processed_pseudogene processed_pseudogene MGP_AJ_T0001551.1 MGP_AJ_G0001469.1 mouse_genomes_project 5 43064319 43065441 + TEC TEC MGP_AJ_T0072787.1 MGP_AJ_G0029726.1 mouse_genomes_project 5 90677158 90684116 + MGP_AJ_P0072787 2010109A12Rik protein_coding protein_coding MGP_AJ_T0072788.1 MGP_AJ_G0029726.1 mouse_genomes_project 5 90677173 90678090 + 2010109A12Rik protein_coding retained_intron MGP_AJ_T0070341.1 MGP_AJ_G0029275.1 mouse_genomes_project 5 17701999 17824029 - MGP_AJ_P0070341 Phtf2 protein_coding protein_coding MGP_AJ_T0070342.1 MGP_AJ_G0029275.1 mouse_genomes_project 5 17702999 17717296 - MGP_AJ_P0070342 Phtf2 protein_coding nonsense_mediated_decay MGP_AJ_T0070343.1 MGP_AJ_G0029275.1 mouse_genomes_project 5 17725564 17796873 - Phtf2 protein_coding processed_transcript MGP_AJ_T0070344.1 MGP_AJ_G0029275.1 mouse_genomes_project 5 17725567 17748709 - MGP_AJ_P0070344 Phtf2 protein_coding nonsense_mediated_decay MGP_AJ_T0070345.1 MGP_AJ_G0029275.1 mouse_genomes_project 5 17731746 17823982 - Phtf2 protein_coding retained_intron MGP_AJ_T0070346.1 MGP_AJ_G0029275.1 mouse_genomes_project 5 17736301 17823983 - Phtf2 protein_coding retained_intron MGP_AJ_T0070347.1 MGP_AJ_G0029275.1 mouse_genomes_project 5 17748685 17823950 - MGP_AJ_P0070347 Phtf2 protein_coding nonsense_mediated_decay MGP_AJ_T0004826.1 MGP_AJ_G0004157.1 mouse_genomes_project 5 121854451 121858760 - Gm15747 antisense antisense MGP_AJ_T0004827.1 MGP_AJ_G0004157.1 mouse_genomes_project 5 121854462 121855867 - Gm15747 antisense antisense MGP_AJ_T0015124.1 MGP_AJ_G0013219.1 mouse_genomes_project 5 109000354 109000852 + processed_pseudogene processed_pseudogene MGP_AJ_T0075824.1 MGP_AJ_G0030315.1 mouse_genomes_project 5 143099589 143103715 + MGP_AJ_P0075824 Bhlha15 protein_coding protein_coding MGP_AJ_T0073212.1 MGP_AJ_G0029821.1 mouse_genomes_project 5 106324803 106353486 + MGP_AJ_P0073212 Pcgf3 protein_coding protein_coding MGP_AJ_T0073213.1 MGP_AJ_G0029821.1 mouse_genomes_project 5 106324803 106372125 + MGP_AJ_P0073213 Pcgf3 protein_coding protein_coding MGP_AJ_T0073214.1 MGP_AJ_G0029821.1 mouse_genomes_project 5 106324884 106349949 + MGP_AJ_P0073214 Pcgf3 protein_coding nonsense_mediated_decay MGP_AJ_T0073215.1 MGP_AJ_G0029821.1 mouse_genomes_project 5 106337634 106342291 + Pcgf3 protein_coding retained_intron MGP_AJ_T0073216.1 MGP_AJ_G0029821.1 mouse_genomes_project 5 106349997 106361280 + Pcgf3 protein_coding retained_intron MGP_AJ_T0074579.1 MGP_AJ_G0030072.1 mouse_genomes_project 5 123429244 123438542 + MGP_AJ_P0074579 Fam101a protein_coding protein_coding MGP_AJ_T0074580.1 MGP_AJ_G0030072.1 mouse_genomes_project 5 123429498 123438541 + MGP_AJ_P0074580 Fam101a protein_coding protein_coding MGP_AJ_T0074581.1 MGP_AJ_G0030072.1 mouse_genomes_project 5 123436105 123437485 + Fam101a protein_coding processed_transcript MGP_AJ_T0073036.1 MGP_AJ_G0029784.1 mouse_genomes_project 5 102625492 102738432 - Gbp8 protein_coding processed_transcript MGP_AJ_T0073037.1 MGP_AJ_G0029784.1 mouse_genomes_project 5 102625495 102656280 - MGP_AJ_P0073037 Gbp8 protein_coding protein_coding MGP_AJ_T0015000.1 MGP_AJ_G0013095.1 mouse_genomes_project 5 58795494 58795963 - processed_pseudogene processed_pseudogene MGP_AJ_T0074468.1 MGP_AJ_G0030055.1 mouse_genomes_project 5 122585783 122686924 - MGP_AJ_P0074468 Pitpnm2 protein_coding protein_coding MGP_AJ_T0074469.1 MGP_AJ_G0030055.1 mouse_genomes_project 5 122585783 122720278 - MGP_AJ_P0074469 Pitpnm2 protein_coding protein_coding MGP_AJ_T0074470.1 MGP_AJ_G0030055.1 mouse_genomes_project 5 122585784 122719969 - MGP_AJ_P0074470 Pitpnm2 protein_coding protein_coding MGP_AJ_T0074471.1 MGP_AJ_G0030055.1 mouse_genomes_project 5 122586840 122658118 - MGP_AJ_P0074471 Pitpnm2 protein_coding protein_coding MGP_AJ_T0074472.1 MGP_AJ_G0030055.1 mouse_genomes_project 5 122587387 122591636 - Pitpnm2 protein_coding retained_intron MGP_AJ_T0074473.1 MGP_AJ_G0030055.1 mouse_genomes_project 5 122588168 122589194 - Pitpnm2 protein_coding retained_intron MGP_AJ_T0074474.1 MGP_AJ_G0030055.1 mouse_genomes_project 5 122592298 122593715 - Pitpnm2 protein_coding retained_intron MGP_AJ_T0074475.1 MGP_AJ_G0030055.1 mouse_genomes_project 5 122599885 122660683 - MGP_AJ_P0074475 Pitpnm2 protein_coding protein_coding MGP_AJ_T0074476.1 MGP_AJ_G0030055.1 mouse_genomes_project 5 122600058 122607341 - Pitpnm2 protein_coding retained_intron MGP_AJ_T0074477.1 MGP_AJ_G0030055.1 mouse_genomes_project 5 122610681 122656054 - MGP_AJ_P0074477 Pitpnm2 protein_coding protein_coding MGP_AJ_T0004860.1 MGP_AJ_G0004182.1 mouse_genomes_project 5 134836723 134983994 + Gm16599 antisense antisense MGP_AJ_T0011604.1 MGP_AJ_G0009726.1 mouse_genomes_project 5 107589168 107589253 + Gm28000 misc_RNA misc_RNA MGP_AJ_T0001676.1 MGP_AJ_G0001592.1 mouse_genomes_project 5 66461666 66464057 - TEC TEC MGP_AJ_T0072032.1 MGP_AJ_G0029561.1 mouse_genomes_project 5 64525235 64549830 + MGP_AJ_P0072032 Tmem33 protein_coding protein_coding MGP_AJ_T0072033.1 MGP_AJ_G0029561.1 mouse_genomes_project 5 64525321 64529286 + MGP_AJ_P0072033 Tmem33 protein_coding protein_coding MGP_AJ_T0072034.1 MGP_AJ_G0029561.1 mouse_genomes_project 5 64525366 64545028 + MGP_AJ_P0072034 Tmem33 protein_coding nonsense_mediated_decay MGP_AJ_T0072035.1 MGP_AJ_G0029561.1 mouse_genomes_project 5 64525366 64533227 + MGP_AJ_P0072035 Tmem33 protein_coding protein_coding MGP_AJ_T0072036.1 MGP_AJ_G0029561.1 mouse_genomes_project 5 64525367 64549830 + MGP_AJ_P0072036 Tmem33 protein_coding protein_coding MGP_AJ_T0072037.1 MGP_AJ_G0029561.1 mouse_genomes_project 5 64525374 64528953 + MGP_AJ_P0072037 Tmem33 protein_coding nonsense_mediated_decay MGP_AJ_T0072038.1 MGP_AJ_G0029561.1 mouse_genomes_project 5 64525424 64527747 + Tmem33 protein_coding retained_intron MGP_AJ_T0072039.1 MGP_AJ_G0029561.1 mouse_genomes_project 5 64525475 64549830 + MGP_AJ_P0072039 Tmem33 protein_coding protein_coding MGP_AJ_T0072040.1 MGP_AJ_G0029561.1 mouse_genomes_project 5 64525566 64533665 + Tmem33 protein_coding retained_intron MGP_AJ_T0008347.1 MGP_AJ_G0006782.1 mouse_genomes_project 5 117735176 117745158 - Gm31314 lincRNA lincRNA MGP_AJ_T0074941.1 MGP_AJ_G0030136.1 mouse_genomes_project 5 133510217 133511476 + MGP_AJ_P0074941 Cldn3 protein_coding protein_coding MGP_AJ_T0014964.1 MGP_AJ_G0013059.1 mouse_genomes_project 5 44819367 44820172 + processed_pseudogene processed_pseudogene MGP_AJ_T0074802.1 MGP_AJ_G0030118.1 mouse_genomes_project 5 129907621 130006178 - MGP_AJ_P0074802 Auts2 protein_coding protein_coding MGP_AJ_T0074803.1 MGP_AJ_G0030118.1 mouse_genomes_project 5 129907630 131021132 - Auts2 protein_coding processed_transcript MGP_AJ_T0074804.1 MGP_AJ_G0030118.1 mouse_genomes_project 5 129908102 131020445 - Auts2 protein_coding processed_transcript MGP_AJ_T0074805.1 MGP_AJ_G0030118.1 mouse_genomes_project 5 129909377 130533883 - Auts2 protein_coding processed_transcript MGP_AJ_T0074806.1 MGP_AJ_G0030118.1 mouse_genomes_project 5 129909609 129951393 - MGP_AJ_P0074806 Auts2 protein_coding protein_coding MGP_AJ_T0074807.1 MGP_AJ_G0030118.1 mouse_genomes_project 5 129909713 131019655 - Auts2 protein_coding processed_transcript MGP_AJ_T0074808.1 MGP_AJ_G0030118.1 mouse_genomes_project 5 129910626 129930382 - MGP_AJ_P0074808 Auts2 protein_coding protein_coding MGP_AJ_T0074809.1 MGP_AJ_G0030118.1 mouse_genomes_project 5 129915721 129926035 - Auts2 protein_coding processed_transcript MGP_AJ_T0074810.1 MGP_AJ_G0030118.1 mouse_genomes_project 5 129943278 129945751 - Auts2 protein_coding retained_intron MGP_AJ_T0074811.1 MGP_AJ_G0030118.1 mouse_genomes_project 5 129949695 130008500 - Auts2 protein_coding retained_intron MGP_AJ_T0074812.1 MGP_AJ_G0030118.1 mouse_genomes_project 5 129951110 130004927 - Auts2 protein_coding processed_transcript MGP_AJ_T0074813.1 MGP_AJ_G0030118.1 mouse_genomes_project 5 130004840 130008535 - Auts2 protein_coding retained_intron MGP_AJ_T0074814.1 MGP_AJ_G0030118.1 mouse_genomes_project 5 130244721 131020192 - Auts2 protein_coding retained_intron MGP_AJ_T0074815.1 MGP_AJ_G0030118.1 mouse_genomes_project 5 130508911 130512589 - Auts2 protein_coding retained_intron MGP_AJ_T0074816.1 MGP_AJ_G0030118.1 mouse_genomes_project 5 130509881 131019809 - Auts2 protein_coding processed_transcript MGP_AJ_T0074817.1 MGP_AJ_G0030118.1 mouse_genomes_project 5 130514871 130533955 - MGP_AJ_P0074817 Auts2 protein_coding protein_coding MGP_AJ_T0074818.1 MGP_AJ_G0030118.1 mouse_genomes_project 5 130514952 130922556 - MGP_AJ_P0074818 Auts2 protein_coding protein_coding MGP_AJ_T0074819.1 MGP_AJ_G0030118.1 mouse_genomes_project 5 130533275 131020586 - Auts2 protein_coding retained_intron MGP_AJ_T0074820.1 MGP_AJ_G0030118.1 mouse_genomes_project 5 131019298 131019607 - MGP_AJ_P0074820 Auts2 protein_coding protein_coding MGP_AJ_T0071599.1 MGP_AJ_G0029492.1 mouse_genomes_project 5 41031778 41076965 + MGP_AJ_P0071599 Cd38 protein_coding protein_coding MGP_AJ_T0071600.1 MGP_AJ_G0029492.1 mouse_genomes_project 5 41032085 41032966 + Cd38 protein_coding retained_intron MGP_AJ_T0008300.1 MGP_AJ_G0006750.1 mouse_genomes_project 5 110037906 110042390 - Gm42488 lincRNA lincRNA MGP_AJ_T0008147.1 MGP_AJ_G0006639.1 mouse_genomes_project 5 51563831 51573194 + Gm10440 lincRNA lincRNA MGP_AJ_T0001675.1 MGP_AJ_G0001591.1 mouse_genomes_project 5 66457254 66460124 - TEC TEC MGP_AJ_T0072294.1 MGP_AJ_G0029609.1 mouse_genomes_project 5 73436242 73449266 + Tmem165 protein_coding processed_transcript MGP_AJ_T0072295.1 MGP_AJ_G0029609.1 mouse_genomes_project 5 73436310 73464142 + MGP_AJ_P0072295 Tmem165 protein_coding protein_coding MGP_AJ_T0072296.1 MGP_AJ_G0029609.1 mouse_genomes_project 5 73451722 73457433 + Tmem165 protein_coding retained_intron MGP_AJ_T0072297.1 MGP_AJ_G0029609.1 mouse_genomes_project 5 73456397 73458363 + Tmem165 protein_coding processed_transcript MGP_AJ_T0070108.1 MGP_AJ_G0029233.1 mouse_genomes_project 5 1598043 2076801 - MGP_AJ_P0070108 Cdk14 protein_coding protein_coding MGP_AJ_T0070109.1 MGP_AJ_G0029233.1 mouse_genomes_project 5 1598043 2193977 - MGP_AJ_P0070109 Cdk14 protein_coding protein_coding MGP_AJ_T0070110.1 MGP_AJ_G0029233.1 mouse_genomes_project 5 1600482 2076044 - MGP_AJ_P0070110 Cdk14 protein_coding protein_coding MGP_AJ_T0070111.1 MGP_AJ_G0029233.1 mouse_genomes_project 5 1601337 2076898 - MGP_AJ_P0070111 Cdk14 protein_coding protein_coding MGP_AJ_T0070112.1 MGP_AJ_G0029233.1 mouse_genomes_project 5 1682086 1685505 - Cdk14 protein_coding retained_intron MGP_AJ_T0070113.1 MGP_AJ_G0029233.1 mouse_genomes_project 5 1717189 2076715 - Cdk14 protein_coding retained_intron MGP_AJ_T0070114.1 MGP_AJ_G0029233.1 mouse_genomes_project 5 1728740 1831306 - Cdk14 protein_coding processed_transcript MGP_AJ_T0070115.1 MGP_AJ_G0029233.1 mouse_genomes_project 5 1803263 2194004 - Cdk14 protein_coding retained_intron MGP_AJ_T0070116.1 MGP_AJ_G0029233.1 mouse_genomes_project 5 1890207 2194031 - Cdk14 protein_coding retained_intron MGP_AJ_T0070117.1 MGP_AJ_G0029233.1 mouse_genomes_project 5 1925442 2193973 - Cdk14 protein_coding retained_intron MGP_AJ_T0070118.1 MGP_AJ_G0029233.1 mouse_genomes_project 5 1982685 1993460 - Cdk14 protein_coding processed_transcript MGP_AJ_T0070119.1 MGP_AJ_G0029233.1 mouse_genomes_project 5 2036643 2077025 - MGP_AJ_P0070119 Cdk14 protein_coding protein_coding MGP_AJ_T0070120.1 MGP_AJ_G0029233.1 mouse_genomes_project 5 2036644 2228074 - MGP_AJ_P0070120 Cdk14 protein_coding protein_coding MGP_AJ_T0070121.1 MGP_AJ_G0029233.1 mouse_genomes_project 5 2059973 2077036 - Cdk14 protein_coding processed_transcript MGP_AJ_T0001665.1 MGP_AJ_G0001581.1 mouse_genomes_project 5 64867283 64867893 - TEC TEC MGP_AJ_T0074754.1 MGP_AJ_G0030107.1 mouse_genomes_project 5 128482171 128513394 + MGP_AJ_P0074754 Crcp protein_coding protein_coding MGP_AJ_T0074755.1 MGP_AJ_G0030107.1 mouse_genomes_project 5 128482188 128513437 + Crcp protein_coding processed_transcript MGP_AJ_T0074756.1 MGP_AJ_G0030107.1 mouse_genomes_project 5 128482203 128513255 + Crcp protein_coding processed_transcript MGP_AJ_T0074757.1 MGP_AJ_G0030107.1 mouse_genomes_project 5 128482260 128513177 + MGP_AJ_P0074757 Crcp protein_coding protein_coding MGP_AJ_T0074758.1 MGP_AJ_G0030107.1 mouse_genomes_project 5 128495731 128513733 + Crcp protein_coding processed_transcript MGP_AJ_T0073899.1 MGP_AJ_G0029956.1 mouse_genomes_project 5 116216771 116254819 + MGP_AJ_P0073899 Tesc protein_coding protein_coding MGP_AJ_T0073900.1 MGP_AJ_G0029956.1 mouse_genomes_project 5 116216793 116254786 + MGP_AJ_P0073900 Tesc protein_coding nonsense_mediated_decay MGP_AJ_T0073901.1 MGP_AJ_G0029956.1 mouse_genomes_project 5 116216898 116254811 + Tesc protein_coding retained_intron MGP_AJ_T0073902.1 MGP_AJ_G0029956.1 mouse_genomes_project 5 116225093 116254714 + Tesc protein_coding processed_transcript MGP_AJ_T0073903.1 MGP_AJ_G0029956.1 mouse_genomes_project 5 116233641 116245667 + Tesc protein_coding processed_transcript MGP_AJ_T0073904.1 MGP_AJ_G0029956.1 mouse_genomes_project 5 116233642 116238501 + Tesc protein_coding processed_transcript MGP_AJ_T0072644.1 MGP_AJ_G0029694.1 mouse_genomes_project 5 88237091 88238040 + MGP_AJ_P0072644 Pf4 protein_coding protein_coding MGP_AJ_T0072645.1 MGP_AJ_G0029694.1 mouse_genomes_project 5 88237169 88237813 + MGP_AJ_P0072645 Pf4 protein_coding protein_coding MGP_AJ_T0072646.1 MGP_AJ_G0029694.1 mouse_genomes_project 5 88237547 88238035 + Pf4 protein_coding retained_intron MGP_AJ_T0073127.1 MGP_AJ_G0029805.1 mouse_genomes_project 5 105372367 105386036 + MGP_AJ_P0073127 1700028K03Rik protein_coding protein_coding MGP_AJ_T0073128.1 MGP_AJ_G0029805.1 mouse_genomes_project 5 105372378 105389205 + 1700028K03Rik protein_coding processed_transcript MGP_AJ_T0073129.1 MGP_AJ_G0029805.1 mouse_genomes_project 5 105372395 105386943 + MGP_AJ_P0073129 1700028K03Rik protein_coding protein_coding MGP_AJ_T0073130.1 MGP_AJ_G0029805.1 mouse_genomes_project 5 105372415 105386751 + 1700028K03Rik protein_coding retained_intron MGP_AJ_T0014883.1 MGP_AJ_G0012978.1 mouse_genomes_project 5 18219637 18219989 - processed_pseudogene processed_pseudogene MGP_AJ_T0075724.1 MGP_AJ_G0030293.1 mouse_genomes_project 5 142159252 142169106 - MGP_AJ_P0075724 Spdye4a protein_coding protein_coding MGP_AJ_T0075725.1 MGP_AJ_G0030293.1 mouse_genomes_project 5 142159526 142170088 - MGP_AJ_P0075725 Spdye4a protein_coding protein_coding MGP_AJ_T0075726.1 MGP_AJ_G0030293.1 mouse_genomes_project 5 142159634 142170114 - MGP_AJ_P0075726 Spdye4a protein_coding protein_coding MGP_AJ_T0001765.1 MGP_AJ_G0001680.1 mouse_genomes_project 5 111288709 111289638 - TEC TEC MGP_AJ_T0099986.1 MGP_AJ_G0037952.1 mouse_genomes_project 5 6012675 6012842 + Gm24666 snRNA snRNA MGP_AJ_T0100011.1 MGP_AJ_G0037977.1 mouse_genomes_project 5 62883532 62883606 + Gm24399 snRNA snRNA MGP_AJ_T0014926.1 MGP_AJ_G0013021.1 mouse_genomes_project 5 26834287 26834975 - processed_pseudogene processed_pseudogene MGP_AJ_T0076093.1 MGP_AJ_G0030376.1 mouse_genomes_project 5 148641850 148674469 + MGP_AJ_P0076093 Tex26 protein_coding protein_coding MGP_AJ_T0076094.1 MGP_AJ_G0030376.1 mouse_genomes_project 5 148641872 148643192 + Tex26 protein_coding processed_transcript MGP_AJ_T0076095.1 MGP_AJ_G0030376.1 mouse_genomes_project 5 148641896 148674469 + MGP_AJ_P0076095 Tex26 protein_coding nonsense_mediated_decay MGP_AJ_T0076096.1 MGP_AJ_G0030376.1 mouse_genomes_project 5 148641905 148674381 + MGP_AJ_P0076096 Tex26 protein_coding nonsense_mediated_decay MGP_AJ_T0076097.1 MGP_AJ_G0030376.1 mouse_genomes_project 5 148641909 148674381 + MGP_AJ_P0076097 Tex26 protein_coding nonsense_mediated_decay MGP_AJ_T0076098.1 MGP_AJ_G0030376.1 mouse_genomes_project 5 148641917 148674287 + MGP_AJ_P0076098 Tex26 protein_coding protein_coding MGP_AJ_T0071027.1 MGP_AJ_G0029397.1 mouse_genomes_project 5 28698464 28714510 - Rbks protein_coding processed_transcript MGP_AJ_T0071028.1 MGP_AJ_G0029397.1 mouse_genomes_project 5 28698464 28771583 - MGP_AJ_P0071028 Rbks protein_coding protein_coding MGP_AJ_T0071031.1 MGP_AJ_G0029397.1 mouse_genomes_project 5 28734007 28760698 - Rbks protein_coding processed_transcript MGP_AJ_T0004651.1 MGP_AJ_G0004026.1 mouse_genomes_project 5 21873439 21886426 + antisense antisense MGP_AJ_T0014848.1 MGP_AJ_G0012943.1 mouse_genomes_project 5 3460891 3461180 - processed_pseudogene processed_pseudogene MGP_AJ_T0011592.1 MGP_AJ_G0009714.1 mouse_genomes_project 5 26730395 26730724 + Gm26346 misc_RNA misc_RNA MGP_AJ_T0070170.1 MGP_AJ_G0029242.1 mouse_genomes_project 5 4120502 4120875 + 4921511H03Rik protein_coding processed_transcript MGP_AJ_T0070171.1 MGP_AJ_G0029242.1 mouse_genomes_project 5 4120508 4127880 + MGP_AJ_P0070171 4921511H03Rik protein_coding protein_coding MGP_AJ_T0070172.1 MGP_AJ_G0029242.1 mouse_genomes_project 5 4120515 4123957 + MGP_AJ_P0070172 4921511H03Rik protein_coding protein_coding MGP_AJ_T0070173.1 MGP_AJ_G0029242.1 mouse_genomes_project 5 4120529 4122193 + MGP_AJ_P0070173 4921511H03Rik protein_coding protein_coding MGP_AJ_T0015098.1 MGP_AJ_G0013193.1 mouse_genomes_project 5 104162346 104162669 - processed_pseudogene processed_pseudogene MGP_AJ_T0008233.1 MGP_AJ_G0006708.1 mouse_genomes_project 5 97597438 97606669 + lincRNA lincRNA MGP_AJ_T0010731.1 MGP_AJ_G0008853.1 mouse_genomes_project 5 138226201 138226297 - Mir339 miRNA miRNA MGP_AJ_T0014907.1 MGP_AJ_G0013002.1 mouse_genomes_project 5 21211074 21212464 + processed_pseudogene processed_pseudogene MGP_AJ_T0075808.1 MGP_AJ_G0030310.1 mouse_genomes_project 5 142826701 142836424 + MGP_AJ_P0075808 Gm42421 protein_coding protein_coding MGP_AJ_T0073768.1 MGP_AJ_G0029936.1 mouse_genomes_project 5 113681274 113732428 + MGP_AJ_P0073768 Pxn protein_coding protein_coding MGP_AJ_T0073769.1 MGP_AJ_G0029936.1 mouse_genomes_project 5 113681309 113732423 + Pxn protein_coding retained_intron MGP_AJ_T0073770.1 MGP_AJ_G0029936.1 mouse_genomes_project 5 113681406 113731419 + MGP_AJ_P0073770 Pxn protein_coding protein_coding MGP_AJ_T0073771.1 MGP_AJ_G0029936.1 mouse_genomes_project 5 113681454 113725580 + MGP_AJ_P0073771 Pxn protein_coding protein_coding MGP_AJ_T0073772.1 MGP_AJ_G0029936.1 mouse_genomes_project 5 113690947 113721324 + Pxn protein_coding processed_transcript MGP_AJ_T0073773.1 MGP_AJ_G0029936.1 mouse_genomes_project 5 113696223 113732423 + Pxn protein_coding processed_transcript MGP_AJ_T0073774.1 MGP_AJ_G0029936.1 mouse_genomes_project 5 113720387 113721853 + Pxn protein_coding processed_transcript MGP_AJ_T0073775.1 MGP_AJ_G0029936.1 mouse_genomes_project 5 113720525 113730950 + MGP_AJ_P0073775 Pxn protein_coding protein_coding MGP_AJ_T0073776.1 MGP_AJ_G0029936.1 mouse_genomes_project 5 113720554 113721389 + Pxn protein_coding retained_intron MGP_AJ_T0073777.1 MGP_AJ_G0029936.1 mouse_genomes_project 5 113721236 113726197 + Pxn protein_coding retained_intron MGP_AJ_T0073778.1 MGP_AJ_G0029936.1 mouse_genomes_project 5 113721744 113722216 + Pxn protein_coding retained_intron MGP_AJ_T0073779.1 MGP_AJ_G0029936.1 mouse_genomes_project 5 113728387 113729241 + Pxn protein_coding retained_intron MGP_AJ_T0001463.1 MGP_AJ_G0001384.1 mouse_genomes_project 5 11680650 11682309 + TEC TEC MGP_AJ_T0073278.1 MGP_AJ_G0029839.1 mouse_genomes_project 5 107534831 107539044 - MGP_AJ_P0073278 Crlf2 protein_coding protein_coding MGP_AJ_T0073279.1 MGP_AJ_G0029839.1 mouse_genomes_project 5 107534835 107539095 - MGP_AJ_P0073279 Crlf2 protein_coding protein_coding MGP_AJ_T0073280.1 MGP_AJ_G0029839.1 mouse_genomes_project 5 107534837 107536593 - MGP_AJ_P0073280 Crlf2 protein_coding protein_coding MGP_AJ_T0100026.1 MGP_AJ_G0037992.1 mouse_genomes_project 5 80969407 80969529 - Gm25806 snRNA snRNA MGP_AJ_T0073614.1 MGP_AJ_G0029904.1 mouse_genomes_project 5 112582265 112591299 + MGP_AJ_P0073614 Mvk protein_coding protein_coding MGP_AJ_T0073615.1 MGP_AJ_G0029904.1 mouse_genomes_project 5 112582282 112598582 + MGP_AJ_P0073615 Mvk protein_coding protein_coding MGP_AJ_T0073616.1 MGP_AJ_G0029904.1 mouse_genomes_project 5 112582290 112598689 + Mvk protein_coding retained_intron MGP_AJ_T0073617.1 MGP_AJ_G0029904.1 mouse_genomes_project 5 112582299 112591299 + MGP_AJ_P0073617 Mvk protein_coding protein_coding MGP_AJ_T0073618.1 MGP_AJ_G0029904.1 mouse_genomes_project 5 112582299 112593620 + MGP_AJ_P0073618 Mvk protein_coding protein_coding MGP_AJ_T0073619.1 MGP_AJ_G0029904.1 mouse_genomes_project 5 112582302 112598696 + MGP_AJ_P0073619 Mvk protein_coding protein_coding MGP_AJ_T0073620.1 MGP_AJ_G0029904.1 mouse_genomes_project 5 112590573 112598677 + MGP_AJ_P0073620 Mvk protein_coding protein_coding MGP_AJ_T0014977.1 MGP_AJ_G0013072.1 mouse_genomes_project 5 51849005 51849168 - processed_pseudogene processed_pseudogene MGP_AJ_T0070205.1 MGP_AJ_G0029246.1 mouse_genomes_project 5 5215978 5241688 - MGP_AJ_P0070205 Dbf4 protein_coding protein_coding MGP_AJ_T0070206.1 MGP_AJ_G0029246.1 mouse_genomes_project 5 5216222 5241548 - MGP_AJ_P0070206 Dbf4 protein_coding protein_coding MGP_AJ_T0070207.1 MGP_AJ_G0029246.1 mouse_genomes_project 5 5216857 5219311 - Dbf4 protein_coding retained_intron MGP_AJ_T0070209.1 MGP_AJ_G0029246.1 mouse_genomes_project 5 5220666 5241689 - Dbf4 protein_coding retained_intron MGP_AJ_T0070210.1 MGP_AJ_G0029246.1 mouse_genomes_project 5 5222148 5224246 - Dbf4 protein_coding retained_intron MGP_AJ_T0070211.1 MGP_AJ_G0029246.1 mouse_genomes_project 5 5237432 5241702 - Dbf4 protein_coding processed_transcript MGP_AJ_T0070212.1 MGP_AJ_G0029246.1 mouse_genomes_project 5 5241191 5241677 - Dbf4 protein_coding retained_intron MGP_AJ_T0004699.1 MGP_AJ_G0004063.1 mouse_genomes_project 5 50235489 50236991 - Gm17182 antisense antisense MGP_AJ_T0071864.1 MGP_AJ_G0029536.1 mouse_genomes_project 5 62137020 62146162 - MGP_AJ_P0071864 Tlr1 protein_coding protein_coding MGP_AJ_T0071865.1 MGP_AJ_G0029536.1 mouse_genomes_project 5 62137021 62145368 - MGP_AJ_P0071865 Tlr1 protein_coding protein_coding MGP_AJ_T0071866.1 MGP_AJ_G0029536.1 mouse_genomes_project 5 62145550 62146164 - Tlr1 protein_coding processed_transcript MGP_AJ_T0004717.1 MGP_AJ_G0004079.1 mouse_genomes_project 5 69531543 69583437 + Gm20647 antisense antisense MGP_AJ_T0100038.1 MGP_AJ_G0038004.1 mouse_genomes_project 5 101342503 101342674 + Gm25721 snRNA snRNA MGP_AJ_T0010687.1 MGP_AJ_G0008809.1 mouse_genomes_project 5 74544457 74544539 + Mir5098 miRNA miRNA MGP_AJ_T0075843.1 MGP_AJ_G0030320.1 mouse_genomes_project 5 143658471 143684959 - MGP_AJ_P0075843 Tmem130 protein_coding protein_coding MGP_AJ_T0075844.1 MGP_AJ_G0030320.1 mouse_genomes_project 5 143675614 143685128 - Tmem130 protein_coding processed_transcript MGP_AJ_T0015192.1 MGP_AJ_G0013287.1 mouse_genomes_project 5 143174928 143175066 + processed_pseudogene processed_pseudogene MGP_AJ_T0073043.1 MGP_AJ_G0029788.1 mouse_genomes_project 5 102920737 102921349 - protein_coding retained_intron MGP_AJ_T0075109.1 MGP_AJ_G0030168.1 mouse_genomes_project 5 134682590 134688948 + MGP_AJ_P0075109 Polr2j protein_coding protein_coding MGP_AJ_T0075110.1 MGP_AJ_G0030168.1 mouse_genomes_project 5 134682590 134688724 + MGP_AJ_P0075110 Polr2j protein_coding protein_coding MGP_AJ_T0075111.1 MGP_AJ_G0030168.1 mouse_genomes_project 5 134682661 134688937 + MGP_AJ_P0075111 Polr2j protein_coding protein_coding MGP_AJ_T0001505.1 MGP_AJ_G0001423.1 mouse_genomes_project 5 30805043 30806198 + TEC TEC MGP_AJ_T0001653.1 MGP_AJ_G0001569.1 mouse_genomes_project 5 63595741 63597074 - TEC TEC MGP_AJ_T0072216.1 MGP_AJ_G0029595.1 mouse_genomes_project 5 70856626 70882458 - MGP_AJ_P0072216 Lrrc66 protein_coding protein_coding MGP_AJ_T0072217.1 MGP_AJ_G0029595.1 mouse_genomes_project 5 70879627 70880264 - MGP_AJ_P0072217 Lrrc66 protein_coding protein_coding MGP_AJ_T0004753.1 MGP_AJ_G0004104.1 mouse_genomes_project 5 98368059 98376308 + Gm15777 antisense antisense MGP_AJ_T0008328.1 MGP_AJ_G0006766.1 mouse_genomes_project 5 113809737 113810505 - 1110006O24Rik lincRNA lincRNA MGP_AJ_T0074948.1 MGP_AJ_G0030138.1 mouse_genomes_project 5 133547563 133575409 + MGP_AJ_P0074948 Stx1a protein_coding protein_coding MGP_AJ_T0074949.1 MGP_AJ_G0030138.1 mouse_genomes_project 5 133547588 133570188 + MGP_AJ_P0074949 Stx1a protein_coding protein_coding MGP_AJ_T0074950.1 MGP_AJ_G0030138.1 mouse_genomes_project 5 133547641 133575409 + MGP_AJ_P0074950 Stx1a protein_coding nonsense_mediated_decay MGP_AJ_T0074951.1 MGP_AJ_G0030138.1 mouse_genomes_project 5 133562141 133573380 + Stx1a protein_coding processed_transcript MGP_AJ_T0074952.1 MGP_AJ_G0030138.1 mouse_genomes_project 5 133565690 133575408 + Stx1a protein_coding retained_intron MGP_AJ_T0074953.1 MGP_AJ_G0030138.1 mouse_genomes_project 5 133565896 133573489 + Stx1a protein_coding processed_transcript MGP_AJ_T0072888.1 MGP_AJ_G0029751.1 mouse_genomes_project 5 98051865 98069122 - Sec31a protein_coding retained_intron MGP_AJ_T0072889.1 MGP_AJ_G0029751.1 mouse_genomes_project 5 98051865 98106436 - MGP_AJ_P0072889 Sec31a protein_coding protein_coding MGP_AJ_T0072890.1 MGP_AJ_G0029751.1 mouse_genomes_project 5 98051866 98063693 - MGP_AJ_P0072890 Sec31a protein_coding protein_coding MGP_AJ_T0072891.1 MGP_AJ_G0029751.1 mouse_genomes_project 5 98051870 98106377 - MGP_AJ_P0072891 Sec31a protein_coding protein_coding MGP_AJ_T0072892.1 MGP_AJ_G0029751.1 mouse_genomes_project 5 98052224 98086106 - MGP_AJ_P0072892 Sec31a protein_coding protein_coding MGP_AJ_T0072893.1 MGP_AJ_G0029751.1 mouse_genomes_project 5 98052362 98054487 - Sec31a protein_coding retained_intron MGP_AJ_T0072894.1 MGP_AJ_G0029751.1 mouse_genomes_project 5 98052427 98073056 - MGP_AJ_P0072894 Sec31a protein_coding protein_coding MGP_AJ_T0072895.1 MGP_AJ_G0029751.1 mouse_genomes_project 5 98055970 98069208 - MGP_AJ_P0072895 Sec31a protein_coding protein_coding MGP_AJ_T0072896.1 MGP_AJ_G0029751.1 mouse_genomes_project 5 98073087 98082819 - MGP_AJ_P0072896 Sec31a protein_coding protein_coding MGP_AJ_T0072897.1 MGP_AJ_G0029751.1 mouse_genomes_project 5 98091637 98095766 - Sec31a protein_coding processed_transcript MGP_AJ_T0072898.1 MGP_AJ_G0029751.1 mouse_genomes_project 5 98097876 98099807 - Sec31a protein_coding retained_intron MGP_AJ_T0072899.1 MGP_AJ_G0029751.1 mouse_genomes_project 5 98105610 98106368 - Sec31a protein_coding retained_intron MGP_AJ_T0074766.1 MGP_AJ_G0030110.1 mouse_genomes_project 5 128626841 128671171 + MGP_AJ_P0074766 Rabgef1 protein_coding protein_coding MGP_AJ_T0074767.1 MGP_AJ_G0030110.1 mouse_genomes_project 5 128626867 128666247 + MGP_AJ_P0074767 Rabgef1 protein_coding protein_coding MGP_AJ_T0074768.1 MGP_AJ_G0030110.1 mouse_genomes_project 5 128642291 128663691 + MGP_AJ_P0074768 Rabgef1 protein_coding protein_coding MGP_AJ_T0074769.1 MGP_AJ_G0030110.1 mouse_genomes_project 5 128642291 128671166 + MGP_AJ_P0074769 Rabgef1 protein_coding protein_coding MGP_AJ_T0074770.1 MGP_AJ_G0030110.1 mouse_genomes_project 5 128642338 128662166 + Rabgef1 protein_coding processed_transcript MGP_AJ_T0074771.1 MGP_AJ_G0030110.1 mouse_genomes_project 5 128642350 128646452 + Rabgef1 protein_coding retained_intron MGP_AJ_T0074772.1 MGP_AJ_G0030110.1 mouse_genomes_project 5 128662128 128666796 + Rabgef1 protein_coding retained_intron MGP_AJ_T0074773.1 MGP_AJ_G0030110.1 mouse_genomes_project 5 128667185 128668780 + Rabgef1 protein_coding retained_intron MGP_AJ_T0074774.1 MGP_AJ_G0030110.1 mouse_genomes_project 5 128668970 128670879 + MGP_AJ_P0074774 Rabgef1 protein_coding nonsense_mediated_decay MGP_AJ_T0004854.1 MGP_AJ_G0004177.1 mouse_genomes_project 5 133535379 133536519 - Abhd11os antisense antisense MGP_AJ_T0004855.1 MGP_AJ_G0004177.1 mouse_genomes_project 5 133535387 133536420 - Abhd11os antisense antisense MGP_AJ_T0001643.1 MGP_AJ_G0001559.1 mouse_genomes_project 5 63089248 63090798 + TEC TEC MGP_AJ_T0001500.1 MGP_AJ_G0001418.1 mouse_genomes_project 5 29547721 29549966 + TEC TEC MGP_AJ_T0100045.1 MGP_AJ_G0038011.1 mouse_genomes_project 5 108847880 108847987 + Gm22583 snRNA snRNA MGP_AJ_T0075370.1 MGP_AJ_G0030217.1 mouse_genomes_project 5 136567106 136576155 + MGP_AJ_P0075370 Azgp1 protein_coding nonsense_mediated_decay MGP_AJ_T0075371.1 MGP_AJ_G0030217.1 mouse_genomes_project 5 136567125 136576155 + MGP_AJ_P0075371 Azgp1 protein_coding protein_coding MGP_AJ_T0075372.1 MGP_AJ_G0030217.1 mouse_genomes_project 5 136567154 136571531 + Azgp1 protein_coding retained_intron MGP_AJ_T0070712.1 MGP_AJ_G0029350.1 mouse_genomes_project 5 27162978 27200128 - MGP_AJ_P0070712 Hadha protein_coding protein_coding MGP_AJ_T0070713.1 MGP_AJ_G0029350.1 mouse_genomes_project 5 27164100 27199942 - Hadha protein_coding processed_transcript MGP_AJ_T0070714.1 MGP_AJ_G0029350.1 mouse_genomes_project 5 27164573 27164980 - Hadha protein_coding processed_transcript MGP_AJ_T0070715.1 MGP_AJ_G0029350.1 mouse_genomes_project 5 27166143 27171902 - Hadha protein_coding retained_intron MGP_AJ_T0070716.1 MGP_AJ_G0029350.1 mouse_genomes_project 5 27171518 27179905 - MGP_AJ_P0070716 Hadha protein_coding nonsense_mediated_decay MGP_AJ_T0070717.1 MGP_AJ_G0029350.1 mouse_genomes_project 5 27173497 27185890 - Hadha protein_coding retained_intron MGP_AJ_T0070718.1 MGP_AJ_G0029350.1 mouse_genomes_project 5 27178097 27199928 - Hadha protein_coding retained_intron MGP_AJ_T0070719.1 MGP_AJ_G0029350.1 mouse_genomes_project 5 27192008 27194468 - Hadha protein_coding retained_intron MGP_AJ_T0070720.1 MGP_AJ_G0029350.1 mouse_genomes_project 5 27198887 27199956 - Hadha protein_coding retained_intron MGP_AJ_T0004778.1 MGP_AJ_G0004123.1 mouse_genomes_project 5 111760109 111760829 + Gm15736 antisense antisense MGP_AJ_T0010712.1 MGP_AJ_G0008834.1 mouse_genomes_project 5 122467359 122467438 + Mir7032 miRNA miRNA MGP_AJ_T0001457.1 MGP_AJ_G0001378.1 mouse_genomes_project 5 11117338 11120216 + TEC TEC MGP_AJ_T0001677.1 MGP_AJ_G0001593.1 mouse_genomes_project 5 66504067 66506196 - TEC TEC MGP_AJ_T0073623.1 MGP_AJ_G0029906.1 mouse_genomes_project 5 112762596 112798949 - MGP_AJ_P0073623 Trpv4 protein_coding protein_coding MGP_AJ_T0073624.1 MGP_AJ_G0029906.1 mouse_genomes_project 5 112762598 112798946 - MGP_AJ_P0073624 Trpv4 protein_coding protein_coding MGP_AJ_T0073625.1 MGP_AJ_G0029906.1 mouse_genomes_project 5 112762601 112776835 - Trpv4 protein_coding retained_intron MGP_AJ_T0073626.1 MGP_AJ_G0029906.1 mouse_genomes_project 5 112763097 112785588 - MGP_AJ_P0073626 Trpv4 protein_coding protein_coding MGP_AJ_T0073627.1 MGP_AJ_G0029906.1 mouse_genomes_project 5 112763097 112785588 - MGP_AJ_P0073627 Trpv4 protein_coding protein_coding MGP_AJ_T0073628.1 MGP_AJ_G0029906.1 mouse_genomes_project 5 112763097 112785588 - MGP_AJ_P0073628 Trpv4 protein_coding protein_coding MGP_AJ_T0073629.1 MGP_AJ_G0029906.1 mouse_genomes_project 5 112767347 112771241 - Trpv4 protein_coding retained_intron MGP_AJ_T0101275.1 MGP_AJ_G0039241.1 mouse_genomes_project 5 19307845 19307959 - Gm25459 snoRNA snoRNA MGP_AJ_T0008187.1 MGP_AJ_G0006670.1 mouse_genomes_project 5 73108418 73112139 - Gm28865 lincRNA lincRNA MGP_AJ_T0008045.1 MGP_AJ_G0006567.1 mouse_genomes_project 5 4483614 4752849 - lincRNA lincRNA MGP_AJ_T0004800.1 MGP_AJ_G0004140.1 mouse_genomes_project 5 117787504 117792307 - Tbx3os1 antisense antisense MGP_AJ_T0004801.1 MGP_AJ_G0004140.1 mouse_genomes_project 5 117787507 117846819 - Tbx3os1 antisense antisense MGP_AJ_T0004802.1 MGP_AJ_G0004140.1 mouse_genomes_project 5 117787599 117788125 - Tbx3os1 antisense antisense MGP_AJ_T0004803.1 MGP_AJ_G0004140.1 mouse_genomes_project 5 117830059 117846896 - Tbx3os1 antisense antisense MGP_AJ_T0004804.1 MGP_AJ_G0004140.1 mouse_genomes_project 5 117830696 117847107 - Tbx3os1 antisense antisense MGP_AJ_T0004805.1 MGP_AJ_G0004140.1 mouse_genomes_project 5 117837546 117890859 - Tbx3os1 antisense antisense MGP_AJ_T0075208.1 MGP_AJ_G0030186.1 mouse_genomes_project 5 135708681 135723479 - MGP_AJ_P0075208 Muc3 protein_coding protein_coding MGP_AJ_T0075209.1 MGP_AJ_G0030186.1 mouse_genomes_project 5 135708720 135713308 - Muc3 protein_coding processed_transcript MGP_AJ_T0015080.1 MGP_AJ_G0013175.1 mouse_genomes_project 5 97282126 97282935 - processed_pseudogene processed_pseudogene MGP_AJ_T0015131.1 MGP_AJ_G0013226.1 mouse_genomes_project 5 112973758 112974401 - processed_pseudogene processed_pseudogene MGP_AJ_T0070313.1 MGP_AJ_G0029267.1 mouse_genomes_project 5 14302976 14308757 + MGP_AJ_P0070313 protein_coding protein_coding MGP_AJ_T0008273.1 MGP_AJ_G0006737.1 mouse_genomes_project 5 106226124 106227062 - Gm42518 lincRNA lincRNA MGP_AJ_T0073275.1 MGP_AJ_G0029836.1 mouse_genomes_project 5 107244871 107252900 - MGP_AJ_P0073275 protein_coding protein_coding MGP_AJ_T0071651.1 MGP_AJ_G0029501.1 mouse_genomes_project 5 42662591 42681954 + MGP_AJ_P0071651 Lap3 protein_coding protein_coding MGP_AJ_T0071652.1 MGP_AJ_G0029501.1 mouse_genomes_project 5 42662721 42669966 + Lap3 protein_coding retained_intron MGP_AJ_T0071653.1 MGP_AJ_G0029501.1 mouse_genomes_project 5 42662743 42672604 + MGP_AJ_P0071653 Lap3 protein_coding protein_coding MGP_AJ_T0071654.1 MGP_AJ_G0029501.1 mouse_genomes_project 5 42667448 42674053 + Lap3 protein_coding retained_intron MGP_AJ_T0071655.1 MGP_AJ_G0029501.1 mouse_genomes_project 5 42669559 42674024 + Lap3 protein_coding retained_intron MGP_AJ_T0071656.1 MGP_AJ_G0029501.1 mouse_genomes_project 5 42678471 42680636 + Lap3 protein_coding retained_intron MGP_AJ_T0070558.1 MGP_AJ_G0029314.1 mouse_genomes_project 5 21505797 21513546 - MGP_AJ_P0070558 Asb10 protein_coding protein_coding MGP_AJ_T0070559.1 MGP_AJ_G0029314.1 mouse_genomes_project 5 21506733 21514067 - MGP_AJ_P0070559 Asb10 protein_coding protein_coding MGP_AJ_T0070560.1 MGP_AJ_G0029314.1 mouse_genomes_project 5 21506751 21513681 - MGP_AJ_P0070560 Asb10 protein_coding protein_coding MGP_AJ_T0070683.1 MGP_AJ_G0029343.1 mouse_genomes_project 5 26585309 26695712 + MGP_AJ_P0070683 Ube3c protein_coding protein_coding MGP_AJ_T0070684.1 MGP_AJ_G0029343.1 mouse_genomes_project 5 26585513 26651046 + MGP_AJ_P0070684 Ube3c protein_coding protein_coding MGP_AJ_T0070685.1 MGP_AJ_G0029343.1 mouse_genomes_project 5 26585553 26617246 + Ube3c protein_coding retained_intron MGP_AJ_T0070686.1 MGP_AJ_G0029343.1 mouse_genomes_project 5 26607154 26617783 + Ube3c protein_coding processed_transcript MGP_AJ_T0070687.1 MGP_AJ_G0029343.1 mouse_genomes_project 5 26649474 26651046 + Ube3c protein_coding retained_intron MGP_AJ_T0073358.1 MGP_AJ_G0029854.1 mouse_genomes_project 5 108632323 108709365 + MGP_AJ_P0073358 Galnt9 protein_coding protein_coding MGP_AJ_T0073359.1 MGP_AJ_G0029854.1 mouse_genomes_project 5 108691441 108709367 + MGP_AJ_P0073359 Galnt9 protein_coding nonsense_mediated_decay MGP_AJ_T0073360.1 MGP_AJ_G0029854.1 mouse_genomes_project 5 108691442 108709370 + MGP_AJ_P0073360 Galnt9 protein_coding protein_coding MGP_AJ_T0074673.1 MGP_AJ_G0030092.1 mouse_genomes_project 5 127985995 128056187 + MGP_AJ_P0074673 Sfswap protein_coding protein_coding MGP_AJ_T0074674.1 MGP_AJ_G0030092.1 mouse_genomes_project 5 127986014 128054451 + MGP_AJ_P0074674 Sfswap protein_coding nonsense_mediated_decay MGP_AJ_T0074675.1 MGP_AJ_G0030092.1 mouse_genomes_project 5 127986020 127989418 + Sfswap protein_coding retained_intron MGP_AJ_T0074676.1 MGP_AJ_G0030092.1 mouse_genomes_project 5 127986025 128056184 + Sfswap protein_coding processed_transcript MGP_AJ_T0074677.1 MGP_AJ_G0030092.1 mouse_genomes_project 5 127986223 127989156 + MGP_AJ_P0074677 Sfswap protein_coding nonsense_mediated_decay MGP_AJ_T0074678.1 MGP_AJ_G0030092.1 mouse_genomes_project 5 127987168 127987823 + Sfswap protein_coding TEC MGP_AJ_T0074679.1 MGP_AJ_G0030092.1 mouse_genomes_project 5 127987933 127988909 + Sfswap protein_coding processed_transcript MGP_AJ_T0074680.1 MGP_AJ_G0030092.1 mouse_genomes_project 5 127988748 127989663 + Sfswap protein_coding retained_intron MGP_AJ_T0074681.1 MGP_AJ_G0030092.1 mouse_genomes_project 5 127988870 128039546 + MGP_AJ_P0074681 Sfswap protein_coding unknown_likely_coding MGP_AJ_T0074682.1 MGP_AJ_G0030092.1 mouse_genomes_project 5 127989115 127997916 + Sfswap protein_coding retained_intron MGP_AJ_T0074683.1 MGP_AJ_G0030092.1 mouse_genomes_project 5 128026194 128035617 + MGP_AJ_P0074683 Sfswap protein_coding nonsense_mediated_decay MGP_AJ_T0074684.1 MGP_AJ_G0030092.1 mouse_genomes_project 5 128033695 128056184 + Sfswap protein_coding retained_intron MGP_AJ_T0074685.1 MGP_AJ_G0030092.1 mouse_genomes_project 5 128035532 128044276 + Sfswap protein_coding processed_transcript MGP_AJ_T0074686.1 MGP_AJ_G0030092.1 mouse_genomes_project 5 128044935 128056187 + Sfswap protein_coding retained_intron MGP_AJ_T0074687.1 MGP_AJ_G0030092.1 mouse_genomes_project 5 128045276 128054817 + Sfswap protein_coding retained_intron MGP_AJ_T0074688.1 MGP_AJ_G0030092.1 mouse_genomes_project 5 128055519 128056187 + Sfswap protein_coding retained_intron MGP_AJ_T0014857.1 MGP_AJ_G0012952.1 mouse_genomes_project 5 6634207 6635171 + processed_pseudogene processed_pseudogene MGP_AJ_T0075380.1 MGP_AJ_G0030222.1 mouse_genomes_project 5 136722476 136746264 + MGP_AJ_P0075380 Zscan21 protein_coding protein_coding MGP_AJ_T0075381.1 MGP_AJ_G0030222.1 mouse_genomes_project 5 136722489 136746316 + MGP_AJ_P0075381 Zscan21 protein_coding protein_coding MGP_AJ_T0075382.1 MGP_AJ_G0030222.1 mouse_genomes_project 5 136722510 136746265 + MGP_AJ_P0075382 Zscan21 protein_coding protein_coding MGP_AJ_T0075383.1 MGP_AJ_G0030222.1 mouse_genomes_project 5 136722510 136746316 + MGP_AJ_P0075383 Zscan21 protein_coding protein_coding MGP_AJ_T0075384.1 MGP_AJ_G0030222.1 mouse_genomes_project 5 136722553 136745298 + MGP_AJ_P0075384 Zscan21 protein_coding protein_coding MGP_AJ_T0075385.1 MGP_AJ_G0030222.1 mouse_genomes_project 5 136722555 136737592 + MGP_AJ_P0075385 Zscan21 protein_coding protein_coding MGP_AJ_T0075386.1 MGP_AJ_G0030222.1 mouse_genomes_project 5 136722614 136746267 + MGP_AJ_P0075386 Zscan21 protein_coding protein_coding MGP_AJ_T0014850.1 MGP_AJ_G0012945.1 mouse_genomes_project 5 4092708 4093294 + processed_pseudogene processed_pseudogene MGP_AJ_T0001899.1 MGP_AJ_G0001812.1 mouse_genomes_project 5 143132705 143134500 + TEC TEC MGP_AJ_T0101320.1 MGP_AJ_G0039286.1 mouse_genomes_project 5 148349076 148349174 + Gm23362 snoRNA snoRNA MGP_AJ_T0014957.1 MGP_AJ_G0013052.1 mouse_genomes_project 5 39164003 39165279 - processed_pseudogene processed_pseudogene MGP_AJ_T0004649.1 MGP_AJ_G0004024.1 mouse_genomes_project 5 21677168 21684957 - Gm26648 antisense antisense MGP_AJ_T0075376.1 MGP_AJ_G0030221.1 mouse_genomes_project 5 136688314 136712461 + MGP_AJ_P0075376 Zkscan1 protein_coding protein_coding MGP_AJ_T0075377.1 MGP_AJ_G0030221.1 mouse_genomes_project 5 136688314 136712461 + MGP_AJ_P0075377 Zkscan1 protein_coding protein_coding MGP_AJ_T0075378.1 MGP_AJ_G0030221.1 mouse_genomes_project 5 136688350 136709137 + MGP_AJ_P0075378 Zkscan1 protein_coding protein_coding MGP_AJ_T0075379.1 MGP_AJ_G0030221.1 mouse_genomes_project 5 136697272 136709136 + MGP_AJ_P0075379 Zkscan1 protein_coding protein_coding MGP_AJ_T0101313.1 MGP_AJ_G0039279.1 mouse_genomes_project 5 119542711 119542845 + Gm26205 snoRNA snoRNA MGP_AJ_T0001854.1 MGP_AJ_G0001768.1 mouse_genomes_project 5 130363561 130366523 - TEC TEC MGP_AJ_T0074009.1 MGP_AJ_G0029984.1 mouse_genomes_project 5 119145066 119172523 - MGP_AJ_P0074009 protein_coding protein_coding MGP_AJ_T0075981.1 MGP_AJ_G0030355.1 mouse_genomes_project 5 146113913 146126106 - MGP_AJ_P0075981 Mtif3 protein_coding protein_coding MGP_AJ_T0075982.1 MGP_AJ_G0030355.1 mouse_genomes_project 5 146116861 146126108 - MGP_AJ_P0075982 Mtif3 protein_coding protein_coding MGP_AJ_T0075983.1 MGP_AJ_G0030355.1 mouse_genomes_project 5 146117708 146126118 - MGP_AJ_P0075983 Mtif3 protein_coding protein_coding MGP_AJ_T0075984.1 MGP_AJ_G0030355.1 mouse_genomes_project 5 146117708 146126070 - MGP_AJ_P0075984 Mtif3 protein_coding protein_coding MGP_AJ_T0075985.1 MGP_AJ_G0030355.1 mouse_genomes_project 5 146121250 146126064 - MGP_AJ_P0075985 Mtif3 protein_coding protein_coding MGP_AJ_T0075986.1 MGP_AJ_G0030355.1 mouse_genomes_project 5 146121261 146126121 - MGP_AJ_P0075986 Mtif3 protein_coding protein_coding MGP_AJ_T0099037.1 MGP_AJ_G0037014.1 mouse_genomes_project 5 2121008 2123569 - Gm43728 sense_intronic sense_intronic MGP_AJ_T0010734.1 MGP_AJ_G0008856.1 mouse_genomes_project 5 139919429 139919510 + Gm44385 miRNA miRNA MGP_AJ_T0072480.1 MGP_AJ_G0029644.1 mouse_genomes_project 5 84184842 84196844 - MGP_AJ_P0072480 Ugt2b1 protein_coding protein_coding MGP_AJ_T0075447.1 MGP_AJ_G0030236.1 mouse_genomes_project 5 137009321 137019833 + MGP_AJ_P0075447 Stag3 protein_coding protein_coding MGP_AJ_T0075448.1 MGP_AJ_G0030236.1 mouse_genomes_project 5 137009590 137043035 + Stag3 protein_coding retained_intron MGP_AJ_T0075449.1 MGP_AJ_G0030236.1 mouse_genomes_project 5 137009607 137043032 + Stag3 protein_coding retained_intron MGP_AJ_T0075450.1 MGP_AJ_G0030236.1 mouse_genomes_project 5 137009607 137043035 + MGP_AJ_P0075450 Stag3 protein_coding protein_coding MGP_AJ_T0075451.1 MGP_AJ_G0030236.1 mouse_genomes_project 5 137009625 137043035 + MGP_AJ_P0075451 Stag3 protein_coding protein_coding MGP_AJ_T0075452.1 MGP_AJ_G0030236.1 mouse_genomes_project 5 137009637 137019488 + MGP_AJ_P0075452 Stag3 protein_coding protein_coding MGP_AJ_T0075453.1 MGP_AJ_G0030236.1 mouse_genomes_project 5 137028216 137030482 + Stag3 protein_coding processed_transcript MGP_AJ_T0075454.1 MGP_AJ_G0030236.1 mouse_genomes_project 5 137033780 137039655 + MGP_AJ_P0075454 Stag3 protein_coding protein_coding MGP_AJ_T0075455.1 MGP_AJ_G0030236.1 mouse_genomes_project 5 137039609 137043028 + MGP_AJ_P0075455 Stag3 protein_coding nonsense_mediated_decay MGP_AJ_T0075865.1 MGP_AJ_G0030323.1 mouse_genomes_project 5 143905525 143934738 - MGP_AJ_P0075865 Kpna7 protein_coding protein_coding MGP_AJ_T0075866.1 MGP_AJ_G0030323.1 mouse_genomes_project 5 143905733 143933728 - MGP_AJ_P0075866 Kpna7 protein_coding protein_coding MGP_AJ_T0075867.1 MGP_AJ_G0030323.1 mouse_genomes_project 5 143907699 143932126 - MGP_AJ_P0075867 Kpna7 protein_coding protein_coding MGP_AJ_T0075868.1 MGP_AJ_G0030323.1 mouse_genomes_project 5 143916008 143928604 - Kpna7 protein_coding processed_transcript MGP_AJ_T0075869.1 MGP_AJ_G0030323.1 mouse_genomes_project 5 143925132 143933488 - MGP_AJ_P0075869 Kpna7 protein_coding protein_coding MGP_AJ_T0075870.1 MGP_AJ_G0030323.1 mouse_genomes_project 5 143931202 144040032 - MGP_AJ_P0075870 Kpna7 protein_coding protein_coding MGP_AJ_T0014872.1 MGP_AJ_G0012967.1 mouse_genomes_project 5 14433931 14434994 + processed_pseudogene processed_pseudogene MGP_AJ_T0098847.1 MGP_AJ_G0036831.1 mouse_genomes_project 5 89905730 89905874 + Gm26039 scaRNA scaRNA MGP_AJ_T0004711.1 MGP_AJ_G0004074.1 mouse_genomes_project 5 64680555 64691117 + Gm26756 antisense antisense MGP_AJ_T0001702.1 MGP_AJ_G0001617.1 mouse_genomes_project 5 72994922 72997246 + TEC TEC MGP_AJ_T0100044.1 MGP_AJ_G0038010.1 mouse_genomes_project 5 108766891 108766998 - Gm22716 snRNA snRNA MGP_AJ_T0001464.1 MGP_AJ_G0001385.1 mouse_genomes_project 5 12735592 12736773 + TEC TEC MGP_AJ_T0074438.1 MGP_AJ_G0030050.1 mouse_genomes_project 5 122443222 122476066 + MGP_AJ_P0074438 Hip1r protein_coding protein_coding MGP_AJ_T0074439.1 MGP_AJ_G0030050.1 mouse_genomes_project 5 122450740 122460490 + MGP_AJ_P0074439 Hip1r protein_coding protein_coding MGP_AJ_T0074440.1 MGP_AJ_G0030050.1 mouse_genomes_project 5 122465335 122467907 + MGP_AJ_P0074440 Hip1r protein_coding nonsense_mediated_decay MGP_AJ_T0074441.1 MGP_AJ_G0030050.1 mouse_genomes_project 5 122469917 122471515 + Hip1r protein_coding retained_intron MGP_AJ_T0074442.1 MGP_AJ_G0030050.1 mouse_genomes_project 5 122470293 122472170 + MGP_AJ_P0074442 Hip1r protein_coding nonsense_mediated_decay MGP_AJ_T0074443.1 MGP_AJ_G0030050.1 mouse_genomes_project 5 122470890 122472196 + Hip1r protein_coding retained_intron MGP_AJ_T0074444.1 MGP_AJ_G0030050.1 mouse_genomes_project 5 122471106 122472182 + Hip1r protein_coding retained_intron MGP_AJ_T0073552.1 MGP_AJ_G0029892.1 mouse_genomes_project 5 112061931 112120775 - MGP_AJ_P0073552 Ssh1 protein_coding protein_coding MGP_AJ_T0073553.1 MGP_AJ_G0029892.1 mouse_genomes_project 5 112064605 112120822 - MGP_AJ_P0073553 Ssh1 protein_coding protein_coding MGP_AJ_T0073554.1 MGP_AJ_G0029892.1 mouse_genomes_project 5 112086250 112120870 - MGP_AJ_P0073554 Ssh1 protein_coding nonsense_mediated_decay MGP_AJ_T0073555.1 MGP_AJ_G0029892.1 mouse_genomes_project 5 112090469 112091636 - MGP_AJ_P0073555 Ssh1 protein_coding protein_coding MGP_AJ_T0073556.1 MGP_AJ_G0029892.1 mouse_genomes_project 5 112091483 112120810 - Ssh1 protein_coding retained_intron MGP_AJ_T0074423.1 MGP_AJ_G0030045.1 mouse_genomes_project 5 122332165 122334093 - MGP_AJ_P0074423 Hcar2 protein_coding protein_coding MGP_AJ_T0072917.1 MGP_AJ_G0029754.1 mouse_genomes_project 5 98244950 98264653 - MGP_AJ_P0072917 Plac8 protein_coding protein_coding MGP_AJ_T0072918.1 MGP_AJ_G0029754.1 mouse_genomes_project 5 98244951 98254949 - MGP_AJ_P0072918 Plac8 protein_coding protein_coding MGP_AJ_T0072919.1 MGP_AJ_G0029754.1 mouse_genomes_project 5 98244952 98255514 - MGP_AJ_P0072919 Plac8 protein_coding protein_coding MGP_AJ_T0072920.1 MGP_AJ_G0029754.1 mouse_genomes_project 5 98254527 98264600 - Plac8 protein_coding retained_intron MGP_AJ_T0073265.1 MGP_AJ_G0029829.1 mouse_genomes_project 5 106599067 106619161 - MGP_AJ_P0073265 protein_coding protein_coding MGP_AJ_T0073266.1 MGP_AJ_G0029829.1 mouse_genomes_project 5 106599148 106619124 - MGP_AJ_P0073266 protein_coding protein_coding MGP_AJ_T0073267.1 MGP_AJ_G0029829.1 mouse_genomes_project 5 106599587 106643797 - MGP_AJ_P0073267 protein_coding protein_coding MGP_AJ_T0073268.1 MGP_AJ_G0029829.1 mouse_genomes_project 5 106601419 106617654 - MGP_AJ_P0073268 protein_coding protein_coding MGP_AJ_T0008282.1 MGP_AJ_G0006742.1 mouse_genomes_project 5 108602909 108614041 + A630023P12Rik lincRNA lincRNA MGP_AJ_T0008283.1 MGP_AJ_G0006742.1 mouse_genomes_project 5 108602930 108603509 + A630023P12Rik lincRNA lincRNA MGP_AJ_T0008284.1 MGP_AJ_G0006742.1 mouse_genomes_project 5 108608922 108613195 + A630023P12Rik lincRNA lincRNA MGP_AJ_T0008285.1 MGP_AJ_G0006742.1 mouse_genomes_project 5 108608958 108610399 + A630023P12Rik lincRNA lincRNA MGP_AJ_T0008286.1 MGP_AJ_G0006742.1 mouse_genomes_project 5 108608989 108614049 + A630023P12Rik lincRNA lincRNA MGP_AJ_T0001511.1 MGP_AJ_G0001429.1 mouse_genomes_project 5 32577751 32578206 + TEC TEC MGP_AJ_T0018140.1 MGP_AJ_G0015574.1 mouse_genomes_project 5 49363245 49367882 + 9230114K14Rik processed_transcript lincRNA MGP_AJ_T0018141.1 MGP_AJ_G0015574.1 mouse_genomes_project 5 49363252 49462667 + 9230114K14Rik processed_transcript lincRNA MGP_AJ_T0018142.1 MGP_AJ_G0015574.1 mouse_genomes_project 5 49363252 49371359 + 9230114K14Rik processed_transcript retained_intron MGP_AJ_T0018143.1 MGP_AJ_G0015574.1 mouse_genomes_project 5 49363286 49429461 + 9230114K14Rik processed_transcript lincRNA MGP_AJ_T0015216.1 MGP_AJ_G0013311.1 mouse_genomes_project 5 148707237 148707787 - processed_pseudogene processed_pseudogene MGP_AJ_T0074129.1 MGP_AJ_G0030004.1 mouse_genomes_project 5 120262594 120268243 + MGP_AJ_P0074129 Fam109a protein_coding protein_coding MGP_AJ_T0074130.1 MGP_AJ_G0030004.1 mouse_genomes_project 5 120262605 120268210 + MGP_AJ_P0074130 Fam109a protein_coding protein_coding MGP_AJ_T0074131.1 MGP_AJ_G0030004.1 mouse_genomes_project 5 120262615 120266495 + MGP_AJ_P0074131 Fam109a protein_coding protein_coding MGP_AJ_T0073886.1 MGP_AJ_G0029954.1 mouse_genomes_project 5 115968887 116057405 + MGP_AJ_P0073886 Nos1 protein_coding protein_coding MGP_AJ_T0073887.1 MGP_AJ_G0029954.1 mouse_genomes_project 5 115968910 116057035 + Nos1 protein_coding processed_transcript MGP_AJ_T0073888.1 MGP_AJ_G0029954.1 mouse_genomes_project 5 116031686 116148328 + MGP_AJ_P0073888 Nos1 protein_coding protein_coding MGP_AJ_T0073889.1 MGP_AJ_G0029954.1 mouse_genomes_project 5 116032022 116143908 + MGP_AJ_P0073889 Nos1 protein_coding nonsense_mediated_decay MGP_AJ_T0073890.1 MGP_AJ_G0029954.1 mouse_genomes_project 5 116057062 116143454 + MGP_AJ_P0073890 Nos1 protein_coding protein_coding MGP_AJ_T0073891.1 MGP_AJ_G0029954.1 mouse_genomes_project 5 116057067 116143358 + MGP_AJ_P0073891 Nos1 protein_coding protein_coding MGP_AJ_T0073892.1 MGP_AJ_G0029954.1 mouse_genomes_project 5 116108892 116115428 + Nos1 protein_coding processed_transcript MGP_AJ_T0001638.1 MGP_AJ_G0001554.1 mouse_genomes_project 5 62839669 62842500 + TEC TEC MGP_AJ_T0100052.1 MGP_AJ_G0038018.1 mouse_genomes_project 5 119697711 119697869 + Gm24671 snRNA snRNA MGP_AJ_T0001801.1 MGP_AJ_G0001716.1 mouse_genomes_project 5 119948086 119950301 + TEC TEC MGP_AJ_T0073762.1 MGP_AJ_G0029935.1 mouse_genomes_project 5 113647424 113654819 - MGP_AJ_P0073762 Sirt4 protein_coding protein_coding MGP_AJ_T0073763.1 MGP_AJ_G0029935.1 mouse_genomes_project 5 113647424 113655245 - MGP_AJ_P0073763 Sirt4 protein_coding protein_coding MGP_AJ_T0073764.1 MGP_AJ_G0029935.1 mouse_genomes_project 5 113647427 113649057 - Sirt4 protein_coding retained_intron MGP_AJ_T0073765.1 MGP_AJ_G0029935.1 mouse_genomes_project 5 113649278 113653363 - Sirt4 protein_coding retained_intron MGP_AJ_T0073766.1 MGP_AJ_G0029935.1 mouse_genomes_project 5 113649349 113654867 - Sirt4 protein_coding processed_transcript MGP_AJ_T0073767.1 MGP_AJ_G0029935.1 mouse_genomes_project 5 113652968 113654888 - Sirt4 protein_coding retained_intron MGP_AJ_T0072276.1 MGP_AJ_G0029606.1 mouse_genomes_project 5 72834121 72913039 + MGP_AJ_P0072276 Kit protein_coding protein_coding MGP_AJ_T0072277.1 MGP_AJ_G0029606.1 mouse_genomes_project 5 72834160 72913039 + MGP_AJ_P0072277 Kit protein_coding protein_coding MGP_AJ_T0072278.1 MGP_AJ_G0029606.1 mouse_genomes_project 5 72869725 72880102 + Kit protein_coding retained_intron MGP_AJ_T0072279.1 MGP_AJ_G0029606.1 mouse_genomes_project 5 72896243 72898153 + Kit protein_coding retained_intron MGP_AJ_T0072280.1 MGP_AJ_G0029606.1 mouse_genomes_project 5 72900143 72902312 + Kit protein_coding retained_intron MGP_AJ_T0072281.1 MGP_AJ_G0029606.1 mouse_genomes_project 5 72902024 72909173 + Kit protein_coding retained_intron MGP_AJ_T0072282.1 MGP_AJ_G0029606.1 mouse_genomes_project 5 72905411 72913011 + Kit protein_coding retained_intron MGP_AJ_T0072283.1 MGP_AJ_G0029606.1 mouse_genomes_project 5 72905510 72908612 + Kit protein_coding retained_intron MGP_AJ_T0073692.1 MGP_AJ_G0029919.1 mouse_genomes_project 5 113100877 113123374 - MGP_AJ_P0073692 Hnf1a protein_coding protein_coding MGP_AJ_T0073693.1 MGP_AJ_G0029919.1 mouse_genomes_project 5 113101958 113123151 - MGP_AJ_P0073693 Hnf1a protein_coding nonsense_mediated_decay MGP_AJ_T0073694.1 MGP_AJ_G0029919.1 mouse_genomes_project 5 113104476 113123151 - MGP_AJ_P0073694 Hnf1a protein_coding nonsense_mediated_decay MGP_AJ_T0073695.1 MGP_AJ_G0029919.1 mouse_genomes_project 5 113121009 113123401 - Hnf1a protein_coding retained_intron MGP_AJ_T0004882.1 MGP_AJ_G0004196.1 mouse_genomes_project 5 143152963 143157669 - 2900089D17Rik antisense antisense MGP_AJ_T0004883.1 MGP_AJ_G0004196.1 mouse_genomes_project 5 143153050 143167342 - 2900089D17Rik antisense antisense MGP_AJ_T0001507.1 MGP_AJ_G0001425.1 mouse_genomes_project 5 31627716 31631248 + TEC TEC MGP_AJ_T0075909.1 MGP_AJ_G0030330.1 mouse_genomes_project 5 144141761 144150114 - MGP_AJ_P0075909 Atp5j2 protein_coding protein_coding MGP_AJ_T0075910.1 MGP_AJ_G0030330.1 mouse_genomes_project 5 144141769 144149644 - MGP_AJ_P0075910 Atp5j2 protein_coding nonsense_mediated_decay MGP_AJ_T0075911.1 MGP_AJ_G0030330.1 mouse_genomes_project 5 144141772 144149644 - MGP_AJ_P0075911 Atp5j2 protein_coding protein_coding MGP_AJ_T0075912.1 MGP_AJ_G0030330.1 mouse_genomes_project 5 144142449 144149563 - MGP_AJ_P0075912 Atp5j2 protein_coding protein_coding MGP_AJ_T0075913.1 MGP_AJ_G0030330.1 mouse_genomes_project 5 144147478 144149580 - Atp5j2 protein_coding retained_intron MGP_AJ_T0011595.1 MGP_AJ_G0009717.1 mouse_genomes_project 5 63575385 63575708 - Gm23183 misc_RNA misc_RNA MGP_AJ_T0074346.1 MGP_AJ_G0030035.1 mouse_genomes_project 5 121855600 121908485 + MGP_AJ_P0074346 Mlxip protein_coding protein_coding MGP_AJ_T0074347.1 MGP_AJ_G0030035.1 mouse_genomes_project 5 121855602 121919537 + MGP_AJ_P0074347 Mlxip protein_coding protein_coding MGP_AJ_T0074348.1 MGP_AJ_G0030035.1 mouse_genomes_project 5 121907125 121919534 + MGP_AJ_P0074348 Mlxip protein_coding nonsense_mediated_decay MGP_AJ_T0074349.1 MGP_AJ_G0030035.1 mouse_genomes_project 5 121913045 121915146 + Mlxip protein_coding processed_transcript MGP_AJ_T0074790.1 MGP_AJ_G0030115.1 mouse_genomes_project 5 128838425 128845356 - A330070K13Rik protein_coding antisense MGP_AJ_T0074791.1 MGP_AJ_G0030115.1 mouse_genomes_project 5 128838498 128845357 - MGP_AJ_P0074791 A330070K13Rik protein_coding protein_coding MGP_AJ_T0075565.1 MGP_AJ_G0030258.1 mouse_genomes_project 5 138617834 138642135 - MGP_AJ_P0075565 Ints1 protein_coding protein_coding MGP_AJ_T0075566.1 MGP_AJ_G0030258.1 mouse_genomes_project 5 138617837 138621414 - Ints1 protein_coding retained_intron MGP_AJ_T0075567.1 MGP_AJ_G0030258.1 mouse_genomes_project 5 138617837 138642100 - MGP_AJ_P0075567 Ints1 protein_coding protein_coding MGP_AJ_T0075568.1 MGP_AJ_G0030258.1 mouse_genomes_project 5 138617838 138621534 - MGP_AJ_P0075568 Ints1 protein_coding protein_coding MGP_AJ_T0075569.1 MGP_AJ_G0030258.1 mouse_genomes_project 5 138628146 138629069 - Ints1 protein_coding retained_intron MGP_AJ_T0075570.1 MGP_AJ_G0030258.1 mouse_genomes_project 5 138631837 138634666 - Ints1 protein_coding retained_intron MGP_AJ_T0075571.1 MGP_AJ_G0030258.1 mouse_genomes_project 5 138633865 138642136 - Ints1 protein_coding retained_intron MGP_AJ_T0075572.1 MGP_AJ_G0030258.1 mouse_genomes_project 5 138634191 138635222 - Ints1 protein_coding retained_intron MGP_AJ_T0075573.1 MGP_AJ_G0030258.1 mouse_genomes_project 5 138636099 138638457 - Ints1 protein_coding retained_intron MGP_AJ_T0075574.1 MGP_AJ_G0030258.1 mouse_genomes_project 5 138639343 138642136 - MGP_AJ_P0075574 Ints1 protein_coding protein_coding MGP_AJ_T0015164.1 MGP_AJ_G0013259.1 mouse_genomes_project 5 135465838 135466234 + processed_pseudogene processed_pseudogene MGP_AJ_T0001808.1 MGP_AJ_G0001723.1 mouse_genomes_project 5 120901656 120904544 - TEC TEC MGP_AJ_T0004684.1 MGP_AJ_G0004052.1 mouse_genomes_project 5 41073805 41074476 - Gm16015 antisense antisense MGP_AJ_T0101273.1 MGP_AJ_G0039239.1 mouse_genomes_project 5 17052223 17052351 - Gm25761 snoRNA snoRNA MGP_AJ_T0075837.1 MGP_AJ_G0030317.1 mouse_genomes_project 5 143155756 143175320 + MGP_AJ_P0075837 Bri3 protein_coding protein_coding MGP_AJ_T0075838.1 MGP_AJ_G0030317.1 mouse_genomes_project 5 143166380 143363802 + MGP_AJ_P0075838 Bri3 protein_coding nonsense_mediated_decay MGP_AJ_T0075839.1 MGP_AJ_G0030317.1 mouse_genomes_project 5 143166389 143175499 + MGP_AJ_P0075839 Bri3 protein_coding protein_coding MGP_AJ_T0010676.1 MGP_AJ_G0008798.1 mouse_genomes_project 5 48380407 48380494 - Gm44377 miRNA miRNA MGP_AJ_T0074257.1 MGP_AJ_G0030023.1 mouse_genomes_project 5 121203596 121237555 - MGP_AJ_P0074257 Anapc5 protein_coding protein_coding MGP_AJ_T0074258.1 MGP_AJ_G0030023.1 mouse_genomes_project 5 121203858 121237503 - MGP_AJ_P0074258 Anapc5 protein_coding protein_coding MGP_AJ_T0074259.1 MGP_AJ_G0030023.1 mouse_genomes_project 5 121203858 121237503 - MGP_AJ_P0074259 Anapc5 protein_coding protein_coding MGP_AJ_T0074260.1 MGP_AJ_G0030023.1 mouse_genomes_project 5 121203858 121237496 - MGP_AJ_P0074260 Anapc5 protein_coding nonsense_mediated_decay MGP_AJ_T0074261.1 MGP_AJ_G0030023.1 mouse_genomes_project 5 121203860 121237496 - MGP_AJ_P0074261 Anapc5 protein_coding protein_coding MGP_AJ_T0074262.1 MGP_AJ_G0030023.1 mouse_genomes_project 5 121203864 121237496 - MGP_AJ_P0074262 Anapc5 protein_coding protein_coding MGP_AJ_T0074263.1 MGP_AJ_G0030023.1 mouse_genomes_project 5 121203868 121237510 - MGP_AJ_P0074263 Anapc5 protein_coding protein_coding MGP_AJ_T0074264.1 MGP_AJ_G0030023.1 mouse_genomes_project 5 121204052 121209635 - MGP_AJ_P0074264 Anapc5 protein_coding nonsense_mediated_decay MGP_AJ_T0074265.1 MGP_AJ_G0030023.1 mouse_genomes_project 5 121204553 121215763 - Anapc5 protein_coding retained_intron MGP_AJ_T0074266.1 MGP_AJ_G0030023.1 mouse_genomes_project 5 121207994 121210595 - MGP_AJ_P0074266 Anapc5 protein_coding protein_coding MGP_AJ_T0074267.1 MGP_AJ_G0030023.1 mouse_genomes_project 5 121209556 121218490 - Anapc5 protein_coding retained_intron MGP_AJ_T0074268.1 MGP_AJ_G0030023.1 mouse_genomes_project 5 121215427 121223376 - MGP_AJ_P0074268 Anapc5 protein_coding nonsense_mediated_decay MGP_AJ_T0074269.1 MGP_AJ_G0030023.1 mouse_genomes_project 5 121215502 121234799 - Anapc5 protein_coding processed_transcript MGP_AJ_T0074270.1 MGP_AJ_G0030023.1 mouse_genomes_project 5 121216127 121222373 - Anapc5 protein_coding retained_intron MGP_AJ_T0074271.1 MGP_AJ_G0030023.1 mouse_genomes_project 5 121216312 121237495 - Anapc5 protein_coding retained_intron MGP_AJ_T0074272.1 MGP_AJ_G0030023.1 mouse_genomes_project 5 121221866 121237234 - Anapc5 protein_coding retained_intron MGP_AJ_T0074273.1 MGP_AJ_G0030023.1 mouse_genomes_project 5 121223361 121237486 - MGP_AJ_P0074273 Anapc5 protein_coding nonsense_mediated_decay MGP_AJ_T0074274.1 MGP_AJ_G0030023.1 mouse_genomes_project 5 121234072 121237491 - Anapc5 protein_coding processed_transcript MGP_AJ_T0072749.1 MGP_AJ_G0029718.1 mouse_genomes_project 5 89922114 89980573 - MGP_AJ_P0072749 Scarb2 protein_coding protein_coding MGP_AJ_T0072750.1 MGP_AJ_G0029718.1 mouse_genomes_project 5 89979736 89981769 - Scarb2 protein_coding retained_intron MGP_AJ_T0075776.1 MGP_AJ_G0030304.1 mouse_genomes_project 5 142572620 142577550 + Cyth3 protein_coding retained_intron MGP_AJ_T0075777.1 MGP_AJ_G0030304.1 mouse_genomes_project 5 142572759 142661210 + MGP_AJ_P0075777 Cyth3 protein_coding protein_coding MGP_AJ_T0075778.1 MGP_AJ_G0030304.1 mouse_genomes_project 5 142584186 142643613 + MGP_AJ_P0075778 Cyth3 protein_coding protein_coding MGP_AJ_T0075779.1 MGP_AJ_G0030304.1 mouse_genomes_project 5 142586471 142643515 + MGP_AJ_P0075779 Cyth3 protein_coding protein_coding MGP_AJ_T0001672.1 MGP_AJ_G0001588.1 mouse_genomes_project 5 66195160 66198142 - TEC TEC MGP_AJ_T0004749.1 MGP_AJ_G0004101.1 mouse_genomes_project 5 97357506 97359542 + 4930522N08Rik antisense antisense MGP_AJ_T0075842.1 MGP_AJ_G0030319.1 mouse_genomes_project 5 143466208 143480548 + MGP_AJ_P0075842 Nptx2 protein_coding protein_coding MGP_AJ_T0015201.1 MGP_AJ_G0013296.1 mouse_genomes_project 5 144941981 144942304 - processed_pseudogene processed_pseudogene MGP_AJ_T0014901.1 MGP_AJ_G0012996.1 mouse_genomes_project 5 20353794 20353918 + processed_pseudogene processed_pseudogene MGP_AJ_T0001620.1 MGP_AJ_G0001537.1 mouse_genomes_project 5 56259881 56262119 + TEC TEC MGP_AJ_T0015089.1 MGP_AJ_G0013184.1 mouse_genomes_project 5 100962088 100962676 + processed_pseudogene processed_pseudogene MGP_AJ_T0073665.1 MGP_AJ_G0029912.1 mouse_genomes_project 5 112951830 112971319 - MGP_AJ_P0073665 Gm20499 protein_coding protein_coding MGP_AJ_T0074972.1 MGP_AJ_G0030142.1 mouse_genomes_project 5 133614006 133648005 + Mlxipl protein_coding processed_transcript MGP_AJ_T0074973.1 MGP_AJ_G0030142.1 mouse_genomes_project 5 133633107 133649261 + Mlxipl protein_coding retained_intron MGP_AJ_T0074974.1 MGP_AJ_G0030142.1 mouse_genomes_project 5 133633118 133649912 + MGP_AJ_P0074974 Mlxipl protein_coding protein_coding MGP_AJ_T0074975.1 MGP_AJ_G0030142.1 mouse_genomes_project 5 133633120 133664086 + MGP_AJ_P0074975 Mlxipl protein_coding nonsense_mediated_decay MGP_AJ_T0074976.1 MGP_AJ_G0030142.1 mouse_genomes_project 5 133633129 133664086 + MGP_AJ_P0074976 Mlxipl protein_coding nonsense_mediated_decay MGP_AJ_T0074977.1 MGP_AJ_G0030142.1 mouse_genomes_project 5 133633129 133664086 + MGP_AJ_P0074977 Mlxipl protein_coding nonsense_mediated_decay MGP_AJ_T0074978.1 MGP_AJ_G0030142.1 mouse_genomes_project 5 133633129 133664086 + MGP_AJ_P0074978 Mlxipl protein_coding nonsense_mediated_decay MGP_AJ_T0074979.1 MGP_AJ_G0030142.1 mouse_genomes_project 5 133633134 133664546 + MGP_AJ_P0074979 Mlxipl protein_coding protein_coding MGP_AJ_T0074980.1 MGP_AJ_G0030142.1 mouse_genomes_project 5 133659773 133660774 + MGP_AJ_P0074980 Mlxipl protein_coding protein_coding MGP_AJ_T0074981.1 MGP_AJ_G0030142.1 mouse_genomes_project 5 133659794 133661902 + MGP_AJ_P0074981 Mlxipl protein_coding protein_coding MGP_AJ_T0071151.1 MGP_AJ_G0029419.1 mouse_genomes_project 5 30875394 30883558 + MGP_AJ_P0071151 Fgfr3 protein_coding protein_coding MGP_AJ_T0071152.1 MGP_AJ_G0029419.1 mouse_genomes_project 5 30875444 30890789 + MGP_AJ_P0071152 Fgfr3 protein_coding protein_coding MGP_AJ_T0071153.1 MGP_AJ_G0029419.1 mouse_genomes_project 5 30875444 30890788 + MGP_AJ_P0071153 Fgfr3 protein_coding protein_coding MGP_AJ_T0071154.1 MGP_AJ_G0029419.1 mouse_genomes_project 5 30875444 30890789 + MGP_AJ_P0071154 Fgfr3 protein_coding protein_coding MGP_AJ_T0071155.1 MGP_AJ_G0029419.1 mouse_genomes_project 5 30875511 30890784 + MGP_AJ_P0071155 Fgfr3 protein_coding protein_coding MGP_AJ_T0071156.1 MGP_AJ_G0029419.1 mouse_genomes_project 5 30875518 30889328 + MGP_AJ_P0071156 Fgfr3 protein_coding protein_coding MGP_AJ_T0071157.1 MGP_AJ_G0029419.1 mouse_genomes_project 5 30876026 30890789 + MGP_AJ_P0071157 Fgfr3 protein_coding protein_coding MGP_AJ_T0071158.1 MGP_AJ_G0029419.1 mouse_genomes_project 5 30876026 30890789 + MGP_AJ_P0071158 Fgfr3 protein_coding protein_coding MGP_AJ_T0071159.1 MGP_AJ_G0029419.1 mouse_genomes_project 5 30876164 30883727 + MGP_AJ_P0071159 Fgfr3 protein_coding protein_coding MGP_AJ_T0071160.1 MGP_AJ_G0029419.1 mouse_genomes_project 5 30876540 30886511 + Fgfr3 protein_coding retained_intron MGP_AJ_T0071161.1 MGP_AJ_G0029419.1 mouse_genomes_project 5 30877492 30883571 + MGP_AJ_P0071161 Fgfr3 protein_coding protein_coding MGP_AJ_T0071162.1 MGP_AJ_G0029419.1 mouse_genomes_project 5 30883458 30886464 + MGP_AJ_P0071162 Fgfr3 protein_coding protein_coding MGP_AJ_T0071163.1 MGP_AJ_G0029419.1 mouse_genomes_project 5 30883684 30887004 + Fgfr3 protein_coding retained_intron MGP_AJ_T0071164.1 MGP_AJ_G0029419.1 mouse_genomes_project 5 30883941 30887482 + MGP_AJ_P0071164 Fgfr3 protein_coding protein_coding MGP_AJ_T0071165.1 MGP_AJ_G0029419.1 mouse_genomes_project 5 30886972 30888573 + MGP_AJ_P0071165 Fgfr3 protein_coding protein_coding MGP_AJ_T0071166.1 MGP_AJ_G0029419.1 mouse_genomes_project 5 30887412 30888634 + Fgfr3 protein_coding retained_intron MGP_AJ_T0071167.1 MGP_AJ_G0029419.1 mouse_genomes_project 5 30888325 30889285 + Fgfr3 protein_coding retained_intron MGP_AJ_T0004719.1 MGP_AJ_G0004081.1 mouse_genomes_project 5 71271316 71286748 + Usp46os1 antisense antisense MGP_AJ_T0072872.1 MGP_AJ_G0029747.1 mouse_genomes_project 5 97660544 97661147 + MGP_AJ_P0072872 4930524J08Rik protein_coding protein_coding MGP_AJ_T0076099.1 MGP_AJ_G0030377.1 mouse_genomes_project 5 148733421 148821966 + MGP_AJ_P0076099 Wdr95 protein_coding protein_coding MGP_AJ_T0076100.1 MGP_AJ_G0030377.1 mouse_genomes_project 5 148734432 148769439 + Wdr95 protein_coding retained_intron MGP_AJ_T0076101.1 MGP_AJ_G0030377.1 mouse_genomes_project 5 148734438 148810160 + MGP_AJ_P0076101 Wdr95 protein_coding nonsense_mediated_decay MGP_AJ_T0076102.1 MGP_AJ_G0030377.1 mouse_genomes_project 5 148734480 148770508 + Wdr95 protein_coding retained_intron MGP_AJ_T0076103.1 MGP_AJ_G0030377.1 mouse_genomes_project 5 148734480 148821966 + MGP_AJ_P0076103 Wdr95 protein_coding protein_coding MGP_AJ_T0076104.1 MGP_AJ_G0030377.1 mouse_genomes_project 5 148741329 148769439 + Wdr95 protein_coding retained_intron MGP_AJ_T0076105.1 MGP_AJ_G0030377.1 mouse_genomes_project 5 148789660 148796101 + Wdr95 protein_coding retained_intron MGP_AJ_T0073050.1 MGP_AJ_G0029791.1 mouse_genomes_project 5 103507702 103622037 + MGP_AJ_P0073050 Lrrc8d protein_coding protein_coding MGP_AJ_T0073051.1 MGP_AJ_G0029791.1 mouse_genomes_project 5 103508521 103622032 + MGP_AJ_P0073051 Lrrc8d protein_coding protein_coding MGP_AJ_T0073052.1 MGP_AJ_G0029791.1 mouse_genomes_project 5 103508542 103537339 + Lrrc8d protein_coding retained_intron MGP_AJ_T0073053.1 MGP_AJ_G0029791.1 mouse_genomes_project 5 103508598 103537337 + Lrrc8d protein_coding processed_transcript MGP_AJ_T0073054.1 MGP_AJ_G0029791.1 mouse_genomes_project 5 103534489 103618660 + MGP_AJ_P0073054 Lrrc8d protein_coding protein_coding MGP_AJ_T0073055.1 MGP_AJ_G0029791.1 mouse_genomes_project 5 103534886 103618671 + MGP_AJ_P0073055 Lrrc8d protein_coding protein_coding MGP_AJ_T0073056.1 MGP_AJ_G0029791.1 mouse_genomes_project 5 103535092 103620462 + Lrrc8d protein_coding processed_transcript MGP_AJ_T0073057.1 MGP_AJ_G0029791.1 mouse_genomes_project 5 103535165 103618827 + MGP_AJ_P0073057 Lrrc8d protein_coding protein_coding MGP_AJ_T0073058.1 MGP_AJ_G0029791.1 mouse_genomes_project 5 103535332 103639020 + Lrrc8d protein_coding processed_transcript MGP_AJ_T0073059.1 MGP_AJ_G0029791.1 mouse_genomes_project 5 103631153 103639019 + Lrrc8d protein_coding processed_transcript MGP_AJ_T0071549.1 MGP_AJ_G0029480.1 mouse_genomes_project 5 35845174 35861444 - MGP_AJ_P0071549 Zfp518b protein_coding protein_coding MGP_AJ_T0071550.1 MGP_AJ_G0029480.1 mouse_genomes_project 5 35845176 35861368 - MGP_AJ_P0071550 Zfp518b protein_coding protein_coding MGP_AJ_T0071551.1 MGP_AJ_G0029480.1 mouse_genomes_project 5 35850862 35861444 - MGP_AJ_P0071551 Zfp518b protein_coding protein_coding MGP_AJ_T0071552.1 MGP_AJ_G0029480.1 mouse_genomes_project 5 35851313 35861375 - MGP_AJ_P0071552 Zfp518b protein_coding protein_coding MGP_AJ_T0075935.1 MGP_AJ_G0030339.1 mouse_genomes_project 5 144872569 144910465 - MGP_AJ_P0075935 protein_coding protein_coding MGP_AJ_T0008181.1 MGP_AJ_G0006665.1 mouse_genomes_project 5 72368943 72412810 + Gm19583 lincRNA lincRNA MGP_AJ_T0099995.1 MGP_AJ_G0037961.1 mouse_genomes_project 5 22490674 22490845 + Gm22656 snRNA snRNA MGP_AJ_T0001766.1 MGP_AJ_G0001681.1 mouse_genomes_project 5 111446453 111447653 - TEC TEC MGP_AJ_T0072976.1 MGP_AJ_G0029764.1 mouse_genomes_project 5 101110402 101229841 + Ptpn13 protein_coding retained_intron MGP_AJ_T0072977.1 MGP_AJ_G0029764.1 mouse_genomes_project 5 101110450 101218162 + MGP_AJ_P0072977 Ptpn13 protein_coding nonsense_mediated_decay MGP_AJ_T0072978.1 MGP_AJ_G0029764.1 mouse_genomes_project 5 101110466 101191600 + Ptpn13 protein_coding retained_intron MGP_AJ_T0072979.1 MGP_AJ_G0029764.1 mouse_genomes_project 5 101110622 101286450 + MGP_AJ_P0072979 Ptpn13 protein_coding protein_coding MGP_AJ_T0072980.1 MGP_AJ_G0029764.1 mouse_genomes_project 5 101217987 101231746 + Ptpn13 protein_coding retained_intron MGP_AJ_T0070607.1 MGP_AJ_G0029325.1 mouse_genomes_project 5 22205977 22209990 + Galnt11 protein_coding processed_transcript MGP_AJ_T0070609.1 MGP_AJ_G0029325.1 mouse_genomes_project 5 22206952 22240064 + MGP_AJ_P0070609 Galnt11 protein_coding protein_coding MGP_AJ_T0070610.1 MGP_AJ_G0029325.1 mouse_genomes_project 5 22220697 22240063 + MGP_AJ_P0070610 Galnt11 protein_coding protein_coding MGP_AJ_T0070611.1 MGP_AJ_G0029325.1 mouse_genomes_project 5 22221107 22223079 + MGP_AJ_P0070611 Galnt11 protein_coding protein_coding MGP_AJ_T0070612.1 MGP_AJ_G0029325.1 mouse_genomes_project 5 22221687 22240064 + MGP_AJ_P0070612 Galnt11 protein_coding protein_coding MGP_AJ_T0072428.1 MGP_AJ_G0029630.1 mouse_genomes_project 5 81333021 81695484 - MGP_AJ_P0072428 Epha5 protein_coding protein_coding MGP_AJ_T0072429.1 MGP_AJ_G0029630.1 mouse_genomes_project 5 81336051 81695369 - MGP_AJ_P0072429 Epha5 protein_coding protein_coding MGP_AJ_T0072430.1 MGP_AJ_G0029630.1 mouse_genomes_project 5 81336051 81695369 - MGP_AJ_P0072430 Epha5 protein_coding protein_coding MGP_AJ_T0072431.1 MGP_AJ_G0029630.1 mouse_genomes_project 5 81343766 81695922 - MGP_AJ_P0072431 Epha5 protein_coding protein_coding MGP_AJ_T0072432.1 MGP_AJ_G0029630.1 mouse_genomes_project 5 81343766 81695369 - MGP_AJ_P0072432 Epha5 protein_coding protein_coding MGP_AJ_T0072433.1 MGP_AJ_G0029630.1 mouse_genomes_project 5 81343766 81695369 - MGP_AJ_P0072433 Epha5 protein_coding protein_coding MGP_AJ_T0072434.1 MGP_AJ_G0029630.1 mouse_genomes_project 5 81386817 81695484 - Epha5 protein_coding retained_intron MGP_AJ_T0072435.1 MGP_AJ_G0029630.1 mouse_genomes_project 5 81436934 81695484 - Epha5 protein_coding retained_intron MGP_AJ_T0072436.1 MGP_AJ_G0029630.1 mouse_genomes_project 5 81516922 81695945 - Epha5 protein_coding retained_intron MGP_AJ_T0072437.1 MGP_AJ_G0029630.1 mouse_genomes_project 5 81614261 81695945 - Epha5 protein_coding retained_intron MGP_AJ_T0072438.1 MGP_AJ_G0029630.1 mouse_genomes_project 5 81642791 81646468 - Epha5 protein_coding retained_intron MGP_AJ_T0001451.1 MGP_AJ_G0001372.1 mouse_genomes_project 5 10326759 10330666 + TEC TEC MGP_AJ_T0074902.1 MGP_AJ_G0030128.1 mouse_genomes_project 5 133116768 133134587 - MGP_AJ_P0074902 Lat2 protein_coding protein_coding MGP_AJ_T0074903.1 MGP_AJ_G0030128.1 mouse_genomes_project 5 133116849 133134552 - MGP_AJ_P0074903 Lat2 protein_coding protein_coding MGP_AJ_T0074904.1 MGP_AJ_G0030128.1 mouse_genomes_project 5 133116984 133127424 - MGP_AJ_P0074904 Lat2 protein_coding protein_coding MGP_AJ_T0074905.1 MGP_AJ_G0030128.1 mouse_genomes_project 5 133117177 133124763 - MGP_AJ_P0074905 Lat2 protein_coding protein_coding MGP_AJ_T0074906.1 MGP_AJ_G0030128.1 mouse_genomes_project 5 133117315 133124208 - Lat2 protein_coding processed_transcript MGP_AJ_T0074907.1 MGP_AJ_G0030128.1 mouse_genomes_project 5 133117544 133134568 - MGP_AJ_P0074907 Lat2 protein_coding nonsense_mediated_decay MGP_AJ_T0074908.1 MGP_AJ_G0030128.1 mouse_genomes_project 5 133117557 133122328 - Lat2 protein_coding retained_intron MGP_AJ_T0074909.1 MGP_AJ_G0030128.1 mouse_genomes_project 5 133123176 133134547 - Lat2 protein_coding processed_transcript MGP_AJ_T0074910.1 MGP_AJ_G0030128.1 mouse_genomes_project 5 133124337 133134528 - MGP_AJ_P0074910 Lat2 protein_coding protein_coding MGP_AJ_T0074911.1 MGP_AJ_G0030128.1 mouse_genomes_project 5 133124442 133126582 - Lat2 protein_coding retained_intron MGP_AJ_T0001782.1 MGP_AJ_G0001697.1 mouse_genomes_project 5 115319823 115322445 + TEC TEC MGP_AJ_T0001490.1 MGP_AJ_G0001410.1 mouse_genomes_project 5 28122028 28124347 + TEC TEC MGP_AJ_T0001491.1 MGP_AJ_G0001410.1 mouse_genomes_project 5 28122030 28124347 + TEC TEC MGP_AJ_T0073836.1 MGP_AJ_G0029943.1 mouse_genomes_project 5 114220413 114265335 - MGP_AJ_P0073836 Tmem233 protein_coding protein_coding MGP_AJ_T0001546.1 MGP_AJ_G0001464.1 mouse_genomes_project 5 42729698 42731074 + TEC TEC MGP_AJ_T0070495.1 MGP_AJ_G0029304.1 mouse_genomes_project 5 21334983 21356225 + MGP_AJ_P0070495 Nos3 protein_coding protein_coding MGP_AJ_T0070496.1 MGP_AJ_G0029304.1 mouse_genomes_project 5 21334983 21356078 + MGP_AJ_P0070496 Nos3 protein_coding protein_coding MGP_AJ_T0102638.1 MGP_AJ_G0040380.1 mouse_genomes_project 5 84485397 84493422 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0073046.1 MGP_AJ_G0029790.1 mouse_genomes_project 5 103320490 103417166 + MGP_AJ_P0073046 Lrrc8c protein_coding protein_coding MGP_AJ_T0073047.1 MGP_AJ_G0029790.1 mouse_genomes_project 5 103320518 103380793 + MGP_AJ_P0073047 Lrrc8c protein_coding protein_coding MGP_AJ_T0073048.1 MGP_AJ_G0029790.1 mouse_genomes_project 5 103320575 103345752 + Lrrc8c protein_coding retained_intron MGP_AJ_T0073049.1 MGP_AJ_G0029790.1 mouse_genomes_project 5 103359961 103411026 + MGP_AJ_P0073049 Lrrc8c protein_coding protein_coding MGP_AJ_T0008317.1 MGP_AJ_G0006760.1 mouse_genomes_project 5 112052842 112054382 - Gm42797 lincRNA lincRNA MGP_AJ_T0070561.1 MGP_AJ_G0029315.1 mouse_genomes_project 5 21516520 21529421 - MGP_AJ_P0070561 4931409K22Rik protein_coding protein_coding MGP_AJ_T0070562.1 MGP_AJ_G0029315.1 mouse_genomes_project 5 21516520 21529421 - MGP_AJ_P0070562 4931409K22Rik protein_coding nonsense_mediated_decay MGP_AJ_T0070563.1 MGP_AJ_G0029315.1 mouse_genomes_project 5 21516536 21526642 - 4931409K22Rik protein_coding retained_intron MGP_AJ_T0070564.1 MGP_AJ_G0029315.1 mouse_genomes_project 5 21526643 21529480 - MGP_AJ_P0070564 4931409K22Rik protein_coding protein_coding MGP_AJ_T0070565.1 MGP_AJ_G0029315.1 mouse_genomes_project 5 21526652 21530820 - 4931409K22Rik protein_coding processed_transcript MGP_AJ_T0008302.1 MGP_AJ_G0006752.1 mouse_genomes_project 5 110307707 110311057 + 1700028D13Rik lincRNA lincRNA MGP_AJ_T0008303.1 MGP_AJ_G0006752.1 mouse_genomes_project 5 110307750 110311059 + 1700028D13Rik lincRNA lincRNA MGP_AJ_T0004823.1 MGP_AJ_G0004156.1 mouse_genomes_project 5 121792366 121803799 - Gm15860 antisense antisense MGP_AJ_T0004824.1 MGP_AJ_G0004156.1 mouse_genomes_project 5 121793976 121803901 - Gm15860 antisense antisense MGP_AJ_T0004825.1 MGP_AJ_G0004156.1 mouse_genomes_project 5 121794112 121801363 - Gm15860 antisense antisense MGP_AJ_T0001554.1 MGP_AJ_G0001472.1 mouse_genomes_project 5 45231594 45234192 + TEC TEC MGP_AJ_T0015012.1 MGP_AJ_G0013107.1 mouse_genomes_project 5 64714083 64714375 + processed_pseudogene processed_pseudogene MGP_AJ_T0015090.1 MGP_AJ_G0013185.1 mouse_genomes_project 5 101312741 101313317 + processed_pseudogene processed_pseudogene MGP_AJ_T0101820.1 MGP_AJ_G0039725.1 mouse_genomes_project 5 63416398 63416777 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0072265.1 MGP_AJ_G0029604.1 mouse_genomes_project 5 72331358 72333651 + MGP_AJ_P0072265 Gsx2 protein_coding protein_coding MGP_AJ_T0072266.1 MGP_AJ_G0029604.1 mouse_genomes_project 5 72331359 72333383 + MGP_AJ_P0072266 Gsx2 protein_coding protein_coding MGP_AJ_T0001784.1 MGP_AJ_G0001699.1 mouse_genomes_project 5 116062760 116062867 + TEC TEC MGP_AJ_T0076187.1 MGP_AJ_G0030389.1 mouse_genomes_project 5 150314748 150674235 - MGP_AJ_P0076187 Gm42906 protein_coding protein_coding MGP_AJ_T0004837.1 MGP_AJ_G0004164.1 mouse_genomes_project 5 123513957 123517476 + Gm42839 antisense antisense MGP_AJ_T0074740.1 MGP_AJ_G0030105.1 mouse_genomes_project 5 128441470 128455948 - MGP_AJ_P0074740 Gusb protein_coding protein_coding MGP_AJ_T0074741.1 MGP_AJ_G0030105.1 mouse_genomes_project 5 128441485 128455727 - MGP_AJ_P0074741 Gusb protein_coding nonsense_mediated_decay MGP_AJ_T0074742.1 MGP_AJ_G0030105.1 mouse_genomes_project 5 128442043 128443105 - Gusb protein_coding retained_intron MGP_AJ_T0074743.1 MGP_AJ_G0030105.1 mouse_genomes_project 5 128451122 128455764 - MGP_AJ_P0074743 Gusb protein_coding protein_coding MGP_AJ_T0074744.1 MGP_AJ_G0030105.1 mouse_genomes_project 5 128452088 128455864 - Gusb protein_coding retained_intron MGP_AJ_T0074745.1 MGP_AJ_G0030105.1 mouse_genomes_project 5 128452523 128455780 - MGP_AJ_P0074745 Gusb protein_coding protein_coding MGP_AJ_T0074454.1 MGP_AJ_G0030053.1 mouse_genomes_project 5 122578890 122581555 + MGP_AJ_P0074454 Ogfod2 protein_coding protein_coding MGP_AJ_T0074455.1 MGP_AJ_G0030053.1 mouse_genomes_project 5 122578897 122581662 + Ogfod2 protein_coding retained_intron MGP_AJ_T0074456.1 MGP_AJ_G0030053.1 mouse_genomes_project 5 122578901 122581083 + MGP_AJ_P0074456 Ogfod2 protein_coding protein_coding MGP_AJ_T0074457.1 MGP_AJ_G0030053.1 mouse_genomes_project 5 122578916 122580951 + Ogfod2 protein_coding retained_intron MGP_AJ_T0074458.1 MGP_AJ_G0030053.1 mouse_genomes_project 5 122578916 122581039 + MGP_AJ_P0074458 Ogfod2 protein_coding protein_coding MGP_AJ_T0074459.1 MGP_AJ_G0030053.1 mouse_genomes_project 5 122578933 122581343 + MGP_AJ_P0074459 Ogfod2 protein_coding protein_coding MGP_AJ_T0074460.1 MGP_AJ_G0030053.1 mouse_genomes_project 5 122579007 122581544 + MGP_AJ_P0074460 Ogfod2 protein_coding nonsense_mediated_decay MGP_AJ_T0074461.1 MGP_AJ_G0030053.1 mouse_genomes_project 5 122579391 122580794 + Ogfod2 protein_coding retained_intron MGP_AJ_T0074462.1 MGP_AJ_G0030053.1 mouse_genomes_project 5 122579879 122581459 + Ogfod2 protein_coding retained_intron MGP_AJ_T0008450.1 MGP_AJ_G0006851.1 mouse_genomes_project 5 145954548 145965080 + Gm43741 lincRNA lincRNA MGP_AJ_T0073718.1 MGP_AJ_G0029926.1 mouse_genomes_project 5 113402800 113407946 + MGP_AJ_P0073718 Pop5 protein_coding protein_coding MGP_AJ_T0073719.1 MGP_AJ_G0029926.1 mouse_genomes_project 5 113404928 113407197 + Pop5 protein_coding processed_transcript MGP_AJ_T0073720.1 MGP_AJ_G0029926.1 mouse_genomes_project 5 113404981 113412320 + MGP_AJ_P0073720 Pop5 protein_coding nonsense_mediated_decay MGP_AJ_T0073721.1 MGP_AJ_G0029926.1 mouse_genomes_project 5 113404984 113407899 + Pop5 protein_coding processed_transcript MGP_AJ_T0073722.1 MGP_AJ_G0029926.1 mouse_genomes_project 5 113404996 113407622 + Pop5 protein_coding retained_intron MGP_AJ_T0073723.1 MGP_AJ_G0029926.1 mouse_genomes_project 5 113407295 113407921 + Pop5 protein_coding processed_transcript MGP_AJ_T0072660.1 MGP_AJ_G0029700.1 mouse_genomes_project 5 88488157 88496456 + MGP_AJ_P0072660 Epgn protein_coding protein_coding MGP_AJ_T0072661.1 MGP_AJ_G0029700.1 mouse_genomes_project 5 88488157 88497458 + MGP_AJ_P0072661 Epgn protein_coding protein_coding MGP_AJ_T0075530.1 MGP_AJ_G0030249.1 mouse_genomes_project 5 138190305 138199966 - MGP_AJ_P0075530 Cox19 protein_coding protein_coding MGP_AJ_T0075531.1 MGP_AJ_G0030249.1 mouse_genomes_project 5 138191928 138199910 - Cox19 protein_coding processed_transcript MGP_AJ_T0075532.1 MGP_AJ_G0030249.1 mouse_genomes_project 5 138192246 138193682 - Cox19 protein_coding processed_transcript MGP_AJ_T0075533.1 MGP_AJ_G0030249.1 mouse_genomes_project 5 138192327 138206096 - MGP_AJ_P0075533 Cox19 protein_coding protein_coding MGP_AJ_T0075534.1 MGP_AJ_G0030249.1 mouse_genomes_project 5 138192416 138199858 - MGP_AJ_P0075534 Cox19 protein_coding nonsense_mediated_decay MGP_AJ_T0075535.1 MGP_AJ_G0030249.1 mouse_genomes_project 5 138196749 138199893 - Cox19 protein_coding retained_intron MGP_AJ_T0075536.1 MGP_AJ_G0030249.1 mouse_genomes_project 5 138196918 138199898 - Cox19 protein_coding retained_intron MGP_AJ_T0070500.1 MGP_AJ_G0029306.1 mouse_genomes_project 5 21365399 21372974 + MGP_AJ_P0070500 Abcb8 protein_coding protein_coding MGP_AJ_T0070501.1 MGP_AJ_G0029306.1 mouse_genomes_project 5 21365412 21382806 + MGP_AJ_P0070501 Abcb8 protein_coding protein_coding MGP_AJ_T0070502.1 MGP_AJ_G0029306.1 mouse_genomes_project 5 21365891 21382697 + MGP_AJ_P0070502 Abcb8 protein_coding protein_coding MGP_AJ_T0070503.1 MGP_AJ_G0029306.1 mouse_genomes_project 5 21366132 21376729 + Abcb8 protein_coding processed_transcript MGP_AJ_T0070504.1 MGP_AJ_G0029306.1 mouse_genomes_project 5 21366144 21373417 + Abcb8 protein_coding retained_intron MGP_AJ_T0070505.1 MGP_AJ_G0029306.1 mouse_genomes_project 5 21373349 21382699 + MGP_AJ_P0070505 Abcb8 protein_coding protein_coding MGP_AJ_T0070506.1 MGP_AJ_G0029306.1 mouse_genomes_project 5 21375005 21379463 + Abcb8 protein_coding retained_intron MGP_AJ_T0070507.1 MGP_AJ_G0029306.1 mouse_genomes_project 5 21378566 21382698 + Abcb8 protein_coding retained_intron MGP_AJ_T0070508.1 MGP_AJ_G0029306.1 mouse_genomes_project 5 21379159 21382676 + MGP_AJ_P0070508 Abcb8 protein_coding protein_coding MGP_AJ_T0001488.1 MGP_AJ_G0001408.1 mouse_genomes_project 5 27890179 27892244 - TEC TEC MGP_AJ_T0070648.1 MGP_AJ_G0029336.1 mouse_genomes_project 5 25219931 25268974 - MGP_AJ_P0070648 protein_coding protein_coding MGP_AJ_T0070649.1 MGP_AJ_G0029336.1 mouse_genomes_project 5 25221561 25229692 - MGP_AJ_P0070649 protein_coding protein_coding MGP_AJ_T0070650.1 MGP_AJ_G0029336.1 mouse_genomes_project 5 25224572 25261061 - MGP_AJ_P0070650 protein_coding protein_coding MGP_AJ_T0070651.1 MGP_AJ_G0029336.1 mouse_genomes_project 5 25224880 25229838 - MGP_AJ_P0070651 protein_coding protein_coding MGP_AJ_T0070652.1 MGP_AJ_G0029336.1 mouse_genomes_project 5 25228914 25230033 - MGP_AJ_P0070652 protein_coding protein_coding MGP_AJ_T0008202.1 MGP_AJ_G0006681.1 mouse_genomes_project 5 82988408 82990386 + Gm43567 lincRNA lincRNA MGP_AJ_T0070952.1 MGP_AJ_G0029387.1 mouse_genomes_project 5 28282719 28284226 + Krtcap3 protein_coding retained_intron MGP_AJ_T0070953.1 MGP_AJ_G0029387.1 mouse_genomes_project 5 28282734 28284226 + MGP_AJ_P0070953 Krtcap3 protein_coding protein_coding MGP_AJ_T0070954.1 MGP_AJ_G0029387.1 mouse_genomes_project 5 28282744 28283920 + Krtcap3 protein_coding retained_intron MGP_AJ_T0070955.1 MGP_AJ_G0029387.1 mouse_genomes_project 5 28282750 28284231 + MGP_AJ_P0070955 Krtcap3 protein_coding protein_coding MGP_AJ_T0070956.1 MGP_AJ_G0029387.1 mouse_genomes_project 5 28282753 28284226 + MGP_AJ_P0070956 Krtcap3 protein_coding protein_coding MGP_AJ_T0070957.1 MGP_AJ_G0029387.1 mouse_genomes_project 5 28282790 28283727 + Krtcap3 protein_coding retained_intron MGP_AJ_T0070958.1 MGP_AJ_G0029387.1 mouse_genomes_project 5 28282955 28284025 + Krtcap3 protein_coding retained_intron MGP_AJ_T0070959.1 MGP_AJ_G0029387.1 mouse_genomes_project 5 28283364 28284228 + Krtcap3 protein_coding retained_intron MGP_AJ_T0070960.1 MGP_AJ_G0029387.1 mouse_genomes_project 5 28283508 28284226 + Krtcap3 protein_coding retained_intron MGP_AJ_T0070961.1 MGP_AJ_G0029387.1 mouse_genomes_project 5 28283583 28284226 + Krtcap3 protein_coding retained_intron MGP_AJ_T0001515.1 MGP_AJ_G0001433.1 mouse_genomes_project 5 34089985 34090118 + TEC TEC MGP_AJ_T0010694.1 MGP_AJ_G0008816.1 mouse_genomes_project 5 96144100 96144209 - Mir703 miRNA miRNA MGP_AJ_T0074514.1 MGP_AJ_G0030060.1 mouse_genomes_project 5 122913918 122936654 + MGP_AJ_P0074514 Kmt5a protein_coding protein_coding MGP_AJ_T0074515.1 MGP_AJ_G0030060.1 mouse_genomes_project 5 122913955 122935856 + MGP_AJ_P0074515 Kmt5a protein_coding nonsense_mediated_decay MGP_AJ_T0074516.1 MGP_AJ_G0030060.1 mouse_genomes_project 5 122913973 122915244 + Kmt5a protein_coding retained_intron MGP_AJ_T0074517.1 MGP_AJ_G0030060.1 mouse_genomes_project 5 122919802 122935305 + MGP_AJ_P0074517 Kmt5a protein_coding protein_coding MGP_AJ_T0074518.1 MGP_AJ_G0030060.1 mouse_genomes_project 5 122919814 122935888 + Kmt5a protein_coding processed_transcript MGP_AJ_T0074519.1 MGP_AJ_G0030060.1 mouse_genomes_project 5 122920017 122936639 + MGP_AJ_P0074519 Kmt5a protein_coding protein_coding MGP_AJ_T0074520.1 MGP_AJ_G0030060.1 mouse_genomes_project 5 122920093 122925636 + Kmt5a protein_coding retained_intron MGP_AJ_T0074521.1 MGP_AJ_G0030060.1 mouse_genomes_project 5 122921013 122931463 + Kmt5a protein_coding processed_transcript MGP_AJ_T0074522.1 MGP_AJ_G0030060.1 mouse_genomes_project 5 122921271 122934976 + Kmt5a protein_coding processed_transcript MGP_AJ_T0074523.1 MGP_AJ_G0030060.1 mouse_genomes_project 5 122921314 122925103 + Kmt5a protein_coding processed_transcript MGP_AJ_T0074524.1 MGP_AJ_G0030060.1 mouse_genomes_project 5 122924489 122934137 + Kmt5a protein_coding processed_transcript MGP_AJ_T0074525.1 MGP_AJ_G0030060.1 mouse_genomes_project 5 122924702 122934288 + Kmt5a protein_coding retained_intron MGP_AJ_T0074526.1 MGP_AJ_G0030060.1 mouse_genomes_project 5 122925503 122935182 + Kmt5a protein_coding retained_intron MGP_AJ_T0008432.1 MGP_AJ_G0006836.1 mouse_genomes_project 5 138387512 138405909 + 4930500L23Rik lincRNA lincRNA MGP_AJ_T0070888.1 MGP_AJ_G0029379.1 mouse_genomes_project 5 28172201 28186724 - Gm29609 protein_coding processed_transcript MGP_AJ_T0070891.1 MGP_AJ_G0029379.1 mouse_genomes_project 5 28179672 28208729 - MGP_AJ_P0070891 Gm29609 protein_coding protein_coding MGP_AJ_T0073630.1 MGP_AJ_G0029907.1 mouse_genomes_project 5 112809933 112830775 - MGP_AJ_P0073630 Gltp protein_coding protein_coding MGP_AJ_T0073631.1 MGP_AJ_G0029907.1 mouse_genomes_project 5 112810615 112830732 - MGP_AJ_P0073631 Gltp protein_coding protein_coding MGP_AJ_T0073632.1 MGP_AJ_G0029907.1 mouse_genomes_project 5 112810760 112830699 - MGP_AJ_P0073632 Gltp protein_coding protein_coding MGP_AJ_T0004679.1 MGP_AJ_G0004050.1 mouse_genomes_project 5 40336662 40413210 - Gm7854 antisense antisense MGP_AJ_T0004680.1 MGP_AJ_G0004050.1 mouse_genomes_project 5 40336662 40412840 - Gm7854 antisense antisense MGP_AJ_T0004681.1 MGP_AJ_G0004050.1 mouse_genomes_project 5 40412856 40413207 - Gm7854 antisense antisense MGP_AJ_T0074824.1 MGP_AJ_G0030120.1 mouse_genomes_project 5 132649205 132677842 - MGP_AJ_P0074824 Wbscr16 protein_coding protein_coding MGP_AJ_T0074825.1 MGP_AJ_G0030120.1 mouse_genomes_project 5 132656975 132670439 - Wbscr16 protein_coding retained_intron MGP_AJ_T0074826.1 MGP_AJ_G0030120.1 mouse_genomes_project 5 132665971 132669384 - Wbscr16 protein_coding retained_intron MGP_AJ_T0011611.1 MGP_AJ_G0009733.1 mouse_genomes_project 5 116406585 116406875 - Gm24050 misc_RNA misc_RNA MGP_AJ_T0101302.1 MGP_AJ_G0039268.1 mouse_genomes_project 5 96208998 96209129 + Gm24279 snoRNA snoRNA MGP_AJ_T0100015.1 MGP_AJ_G0037981.1 mouse_genomes_project 5 67141896 67141983 + Gm23661 snRNA snRNA MGP_AJ_T0014897.1 MGP_AJ_G0012992.1 mouse_genomes_project 5 19864251 19864862 - processed_pseudogene processed_pseudogene MGP_AJ_T0074008.1 MGP_AJ_G0029983.1 mouse_genomes_project 5 119142883 119175379 - MGP_AJ_P0074008 protein_coding protein_coding MGP_AJ_T0008230.1 MGP_AJ_G0006706.1 mouse_genomes_project 5 97178524 97181173 + Gm43253 lincRNA lincRNA MGP_AJ_T0015158.1 MGP_AJ_G0013253.1 mouse_genomes_project 5 132974855 132975065 + processed_pseudogene processed_pseudogene MGP_AJ_T0073711.1 MGP_AJ_G0029925.1 mouse_genomes_project 5 113331785 113357304 - MGP_AJ_P0073711 Cabp1 protein_coding protein_coding MGP_AJ_T0073712.1 MGP_AJ_G0029925.1 mouse_genomes_project 5 113331785 113349194 - MGP_AJ_P0073712 Cabp1 protein_coding protein_coding MGP_AJ_T0073713.1 MGP_AJ_G0029925.1 mouse_genomes_project 5 113331810 113344309 - Cabp1 protein_coding processed_transcript MGP_AJ_T0073714.1 MGP_AJ_G0029925.1 mouse_genomes_project 5 113332042 113349010 - MGP_AJ_P0073714 Cabp1 protein_coding protein_coding MGP_AJ_T0073715.1 MGP_AJ_G0029925.1 mouse_genomes_project 5 113332067 113348947 - MGP_AJ_P0073715 Cabp1 protein_coding nonsense_mediated_decay MGP_AJ_T0073716.1 MGP_AJ_G0029925.1 mouse_genomes_project 5 113335935 113344146 - Cabp1 protein_coding retained_intron MGP_AJ_T0073717.1 MGP_AJ_G0029925.1 mouse_genomes_project 5 113343133 113347034 - Cabp1 protein_coding retained_intron MGP_AJ_T0072795.1 MGP_AJ_G0029728.1 mouse_genomes_project 5 93616016 93620134 + MGP_AJ_P0072795 Cxcl13 protein_coding protein_coding MGP_AJ_T0001891.1 MGP_AJ_G0001804.1 mouse_genomes_project 5 140198343 140199304 - TEC TEC MGP_AJ_T0070994.1 MGP_AJ_G0029393.1 mouse_genomes_project 5 28566560 28586230 + MGP_AJ_P0070994 Gpn1 protein_coding protein_coding MGP_AJ_T0070995.1 MGP_AJ_G0029393.1 mouse_genomes_project 5 28566571 28574843 + Gpn1 protein_coding retained_intron MGP_AJ_T0070996.1 MGP_AJ_G0029393.1 mouse_genomes_project 5 28566572 28569536 + MGP_AJ_P0070996 Gpn1 protein_coding protein_coding MGP_AJ_T0070997.1 MGP_AJ_G0029393.1 mouse_genomes_project 5 28566586 28571101 + MGP_AJ_P0070997 Gpn1 protein_coding nonsense_mediated_decay MGP_AJ_T0070998.1 MGP_AJ_G0029393.1 mouse_genomes_project 5 28566613 28575349 + Gpn1 protein_coding retained_intron MGP_AJ_T0070999.1 MGP_AJ_G0029393.1 mouse_genomes_project 5 28566820 28569144 + Gpn1 protein_coding processed_transcript MGP_AJ_T0071000.1 MGP_AJ_G0029393.1 mouse_genomes_project 5 28580388 28584185 + Gpn1 protein_coding retained_intron MGP_AJ_T0075809.1 MGP_AJ_G0030311.1 mouse_genomes_project 5 142832149 142845509 + Rsph10b protein_coding processed_transcript MGP_AJ_T0075810.1 MGP_AJ_G0030311.1 mouse_genomes_project 5 142832176 142898599 + MGP_AJ_P0075810 Rsph10b protein_coding protein_coding MGP_AJ_T0075811.1 MGP_AJ_G0030311.1 mouse_genomes_project 5 142836197 142845506 + MGP_AJ_P0075811 Rsph10b protein_coding protein_coding MGP_AJ_T0075815.1 MGP_AJ_G0030311.1 mouse_genomes_project 5 142878344 142898603 + MGP_AJ_P0075815 Rsph10b protein_coding unknown_likely_coding MGP_AJ_T0075816.1 MGP_AJ_G0030311.1 mouse_genomes_project 5 142894026 142898408 + Rsph10b protein_coding processed_transcript MGP_AJ_T0004706.1 MGP_AJ_G0004070.1 mouse_genomes_project 5 63874411 63926028 - Uchl1os antisense antisense MGP_AJ_T0004707.1 MGP_AJ_G0004070.1 mouse_genomes_project 5 63904986 63925563 - Uchl1os antisense antisense MGP_AJ_T0074987.1 MGP_AJ_G0030144.1 mouse_genomes_project 5 133696641 133710225 + MGP_AJ_P0074987 Bcl7b protein_coding protein_coding MGP_AJ_T0074988.1 MGP_AJ_G0030144.1 mouse_genomes_project 5 133696747 133701807 + MGP_AJ_P0074988 Bcl7b protein_coding protein_coding MGP_AJ_T0074989.1 MGP_AJ_G0030144.1 mouse_genomes_project 5 133696770 133710201 + MGP_AJ_P0074989 Bcl7b protein_coding protein_coding MGP_AJ_T0074990.1 MGP_AJ_G0030144.1 mouse_genomes_project 5 133696803 133708965 + MGP_AJ_P0074990 Bcl7b protein_coding protein_coding MGP_AJ_T0074991.1 MGP_AJ_G0030144.1 mouse_genomes_project 5 133707953 133709495 + Bcl7b protein_coding retained_intron MGP_AJ_T0008097.1 MGP_AJ_G0006603.1 mouse_genomes_project 5 31100164 31102614 + lincRNA lincRNA MGP_AJ_T0100019.1 MGP_AJ_G0037985.1 mouse_genomes_project 5 70208521 70208607 - Gm24776 snRNA snRNA MGP_AJ_T0010678.1 MGP_AJ_G0008800.1 mouse_genomes_project 5 61303625 61303703 - Gm23967 miRNA miRNA MGP_AJ_T0008064.1 MGP_AJ_G0006581.1 mouse_genomes_project 5 20270696 20301131 - lincRNA lincRNA MGP_AJ_T0075665.1 MGP_AJ_G0030281.1 mouse_genomes_project 5 141400231 141466650 - MGP_AJ_P0075665 Radil protein_coding protein_coding MGP_AJ_T0075666.1 MGP_AJ_G0030281.1 mouse_genomes_project 5 141400236 141466679 - Radil protein_coding retained_intron MGP_AJ_T0075667.1 MGP_AJ_G0030281.1 mouse_genomes_project 5 141400236 141460645 - MGP_AJ_P0075667 Radil protein_coding protein_coding MGP_AJ_T0075668.1 MGP_AJ_G0030281.1 mouse_genomes_project 5 141400273 141466694 - MGP_AJ_P0075668 Radil protein_coding protein_coding MGP_AJ_T0075669.1 MGP_AJ_G0030281.1 mouse_genomes_project 5 141401877 141402964 - Radil protein_coding retained_intron MGP_AJ_T0075670.1 MGP_AJ_G0030281.1 mouse_genomes_project 5 141423155 141424530 - MGP_AJ_P0075670 Radil protein_coding protein_coding MGP_AJ_T0075672.1 MGP_AJ_G0030281.1 mouse_genomes_project 5 141459234 141466582 - MGP_AJ_P0075672 Radil protein_coding protein_coding MGP_AJ_T0015183.1 MGP_AJ_G0013278.1 mouse_genomes_project 5 141191711 141192675 + processed_pseudogene processed_pseudogene MGP_AJ_T0075930.1 MGP_AJ_G0030335.1 mouse_genomes_project 5 144302050 144350439 + MGP_AJ_P0075930 Cyp3a57 protein_coding nonsense_mediated_decay MGP_AJ_T0075931.1 MGP_AJ_G0030335.1 mouse_genomes_project 5 144302058 144350853 + MGP_AJ_P0075931 Cyp3a57 protein_coding protein_coding MGP_AJ_T0001686.1 MGP_AJ_G0001601.1 mouse_genomes_project 5 70288877 70292249 - TEC TEC MGP_AJ_T0073978.1 MGP_AJ_G0029975.1 mouse_genomes_project 5 118895550 118901641 + MGP_AJ_P0073978 Rasal1 protein_coding protein_coding MGP_AJ_T0073979.1 MGP_AJ_G0029975.1 mouse_genomes_project 5 118895560 118926127 + MGP_AJ_P0073979 Rasal1 protein_coding protein_coding MGP_AJ_T0073980.1 MGP_AJ_G0029975.1 mouse_genomes_project 5 118895926 118926127 + MGP_AJ_P0073980 Rasal1 protein_coding protein_coding MGP_AJ_T0073981.1 MGP_AJ_G0029975.1 mouse_genomes_project 5 118900107 118906393 + Rasal1 protein_coding processed_transcript MGP_AJ_T0073982.1 MGP_AJ_G0029975.1 mouse_genomes_project 5 118925122 118925836 + Rasal1 protein_coding retained_intron MGP_AJ_T0004818.1 MGP_AJ_G0004152.1 mouse_genomes_project 5 120992061 120995423 + Gm43301 antisense antisense MGP_AJ_T0074928.1 MGP_AJ_G0030132.1 mouse_genomes_project 5 133424453 133429500 - MGP_AJ_P0074928 Wbscr28 protein_coding protein_coding MGP_AJ_T0074929.1 MGP_AJ_G0030132.1 mouse_genomes_project 5 133424454 133429500 - MGP_AJ_P0074929 Wbscr28 protein_coding protein_coding MGP_AJ_T0070376.1 MGP_AJ_G0029281.1 mouse_genomes_project 5 18308828 18314546 + MGP_AJ_P0070376 Fgl2 protein_coding protein_coding MGP_AJ_T0075243.1 MGP_AJ_G0030192.1 mouse_genomes_project 5 135866431 135887074 - MGP_AJ_P0075243 Slc12a9 protein_coding protein_coding MGP_AJ_T0075244.1 MGP_AJ_G0030192.1 mouse_genomes_project 5 135872912 135874192 - Slc12a9 protein_coding retained_intron MGP_AJ_T0075245.1 MGP_AJ_G0030192.1 mouse_genomes_project 5 135882148 135887074 - Slc12a9 protein_coding retained_intron MGP_AJ_T0075246.1 MGP_AJ_G0030192.1 mouse_genomes_project 5 135885753 135886487 - MGP_AJ_P0075246 Slc12a9 protein_coding protein_coding MGP_AJ_T0074775.1 MGP_AJ_G0030111.1 mouse_genomes_project 5 128673910 128686393 + MGP_AJ_P0074775 Tmem248 protein_coding protein_coding MGP_AJ_T0074776.1 MGP_AJ_G0030111.1 mouse_genomes_project 5 128676573 128688917 + MGP_AJ_P0074776 Tmem248 protein_coding protein_coding MGP_AJ_T0074777.1 MGP_AJ_G0030111.1 mouse_genomes_project 5 128676573 128701412 + MGP_AJ_P0074777 Tmem248 protein_coding protein_coding MGP_AJ_T0074778.1 MGP_AJ_G0030111.1 mouse_genomes_project 5 128676669 128688793 + MGP_AJ_P0074778 Tmem248 protein_coding protein_coding MGP_AJ_T0074779.1 MGP_AJ_G0030111.1 mouse_genomes_project 5 128679166 128701313 + MGP_AJ_P0074779 Tmem248 protein_coding protein_coding MGP_AJ_T0072493.1 MGP_AJ_G0029652.1 mouse_genomes_project 5 84778904 84814281 - MGP_AJ_P0072493 Gm43638 protein_coding protein_coding MGP_AJ_T0074028.1 MGP_AJ_G0029989.1 mouse_genomes_project 5 119557972 119709445 + MGP_AJ_P0074028 Gm15800 protein_coding protein_coding MGP_AJ_T0074029.1 MGP_AJ_G0029989.1 mouse_genomes_project 5 119624377 119643164 + MGP_AJ_P0074029 Gm15800 protein_coding protein_coding MGP_AJ_T0074030.1 MGP_AJ_G0029989.1 mouse_genomes_project 5 119624980 119643747 + Gm15800 protein_coding retained_intron MGP_AJ_T0074031.1 MGP_AJ_G0029989.1 mouse_genomes_project 5 119629428 119638162 + MGP_AJ_P0074031 Gm15800 protein_coding protein_coding MGP_AJ_T0074032.1 MGP_AJ_G0029989.1 mouse_genomes_project 5 119644441 119663718 + MGP_AJ_P0074032 Gm15800 protein_coding protein_coding MGP_AJ_T0074033.1 MGP_AJ_G0029989.1 mouse_genomes_project 5 119654631 119657533 + Gm15800 protein_coding processed_transcript MGP_AJ_T0074034.1 MGP_AJ_G0029989.1 mouse_genomes_project 5 119658918 119661674 + Gm15800 protein_coding processed_transcript MGP_AJ_T0001499.1 MGP_AJ_G0001417.1 mouse_genomes_project 5 29540797 29543262 + TEC TEC MGP_AJ_T0008130.1 MGP_AJ_G0006624.1 mouse_genomes_project 5 41585974 41601303 - Gm42985 lincRNA lincRNA MGP_AJ_T0101280.1 MGP_AJ_G0039246.1 mouse_genomes_project 5 52019641 52019770 + Gm24235 snoRNA snoRNA MGP_AJ_T0073687.1 MGP_AJ_G0029918.1 mouse_genomes_project 5 113094051 113101681 + MGP_AJ_P0073687 2210016L21Rik protein_coding protein_coding MGP_AJ_T0073688.1 MGP_AJ_G0029918.1 mouse_genomes_project 5 113094097 113098775 + 2210016L21Rik protein_coding retained_intron MGP_AJ_T0073689.1 MGP_AJ_G0029918.1 mouse_genomes_project 5 113094103 113098741 + MGP_AJ_P0073689 2210016L21Rik protein_coding nonsense_mediated_decay MGP_AJ_T0073690.1 MGP_AJ_G0029918.1 mouse_genomes_project 5 113094124 113098112 + 2210016L21Rik protein_coding retained_intron MGP_AJ_T0073691.1 MGP_AJ_G0029918.1 mouse_genomes_project 5 113097699 113099682 + MGP_AJ_P0073691 2210016L21Rik protein_coding nonsense_mediated_decay MGP_AJ_T0098685.1 MGP_AJ_G0036669.1 mouse_genomes_project 5 257039 257159 + n-R5s169 rRNA rRNA MGP_AJ_T0015057.1 MGP_AJ_G0013152.1 mouse_genomes_project 5 85417133 85417512 + processed_pseudogene processed_pseudogene MGP_AJ_T0072466.1 MGP_AJ_G0029640.1 mouse_genomes_project 5 83924946 83943775 - MGP_AJ_P0072466 Tmprss11b protein_coding protein_coding MGP_AJ_T0015004.1 MGP_AJ_G0013099.1 mouse_genomes_project 5 61197641 61198124 - processed_pseudogene processed_pseudogene MGP_AJ_T0004710.1 MGP_AJ_G0004073.1 mouse_genomes_project 5 64524613 64525936 - Gm42670 antisense antisense MGP_AJ_T0075888.1 MGP_AJ_G0030326.1 mouse_genomes_project 5 144085566 144096737 - MGP_AJ_P0075888 Pdap1 protein_coding protein_coding MGP_AJ_T0075889.1 MGP_AJ_G0030326.1 mouse_genomes_project 5 144086882 144093195 - Pdap1 protein_coding processed_transcript MGP_AJ_T0075890.1 MGP_AJ_G0030326.1 mouse_genomes_project 5 144088169 144092271 - Pdap1 protein_coding retained_intron MGP_AJ_T0075891.1 MGP_AJ_G0030326.1 mouse_genomes_project 5 144089973 144092425 - Pdap1 protein_coding retained_intron MGP_AJ_T0075892.1 MGP_AJ_G0030326.1 mouse_genomes_project 5 144093076 144096497 - Pdap1 protein_coding retained_intron MGP_AJ_T0001836.1 MGP_AJ_G0001750.1 mouse_genomes_project 5 127190425 127191094 - TEC TEC MGP_AJ_T0070941.1 MGP_AJ_G0029386.1 mouse_genomes_project 5 28271756 28282595 + MGP_AJ_P0070941 Nrbp1 protein_coding protein_coding MGP_AJ_T0070942.1 MGP_AJ_G0029386.1 mouse_genomes_project 5 28271756 28282589 + MGP_AJ_P0070942 Nrbp1 protein_coding protein_coding MGP_AJ_T0070943.1 MGP_AJ_G0029386.1 mouse_genomes_project 5 28271769 28275877 + MGP_AJ_P0070943 Nrbp1 protein_coding protein_coding MGP_AJ_T0070944.1 MGP_AJ_G0029386.1 mouse_genomes_project 5 28271787 28276763 + Nrbp1 protein_coding retained_intron MGP_AJ_T0070945.1 MGP_AJ_G0029386.1 mouse_genomes_project 5 28271795 28275798 + MGP_AJ_P0070945 Nrbp1 protein_coding protein_coding MGP_AJ_T0070946.1 MGP_AJ_G0029386.1 mouse_genomes_project 5 28271824 28278943 + MGP_AJ_P0070946 Nrbp1 protein_coding protein_coding MGP_AJ_T0070947.1 MGP_AJ_G0029386.1 mouse_genomes_project 5 28274343 28275352 + Nrbp1 protein_coding retained_intron MGP_AJ_T0070948.1 MGP_AJ_G0029386.1 mouse_genomes_project 5 28278350 28281010 + Nrbp1 protein_coding retained_intron MGP_AJ_T0070949.1 MGP_AJ_G0029386.1 mouse_genomes_project 5 28280383 28282592 + Nrbp1 protein_coding retained_intron MGP_AJ_T0070950.1 MGP_AJ_G0029386.1 mouse_genomes_project 5 28280619 28281762 + Nrbp1 protein_coding retained_intron MGP_AJ_T0070951.1 MGP_AJ_G0029386.1 mouse_genomes_project 5 28281373 28282478 + Nrbp1 protein_coding retained_intron MGP_AJ_T0071565.1 MGP_AJ_G0029485.1 mouse_genomes_project 5 39018571 39075232 - MGP_AJ_P0071565 Bod1l protein_coding protein_coding MGP_AJ_T0071566.1 MGP_AJ_G0029485.1 mouse_genomes_project 5 39018571 39075232 - MGP_AJ_P0071566 Bod1l protein_coding protein_coding MGP_AJ_T0071567.1 MGP_AJ_G0029485.1 mouse_genomes_project 5 39052539 39054959 - Bod1l protein_coding processed_transcript MGP_AJ_T0071568.1 MGP_AJ_G0029485.1 mouse_genomes_project 5 39053431 39075209 - Bod1l protein_coding retained_intron MGP_AJ_T0074609.1 MGP_AJ_G0030076.1 mouse_genomes_project 5 123819657 123820891 + MGP_AJ_P0074609 Gm10382 protein_coding protein_coding MGP_AJ_T0100003.1 MGP_AJ_G0037969.1 mouse_genomes_project 5 35718267 35718403 + Gm22249 snRNA snRNA MGP_AJ_T0071118.1 MGP_AJ_G0029412.1 mouse_genomes_project 5 30523615 30556138 + Uvssa protein_coding retained_intron MGP_AJ_T0071119.1 MGP_AJ_G0029412.1 mouse_genomes_project 5 30523762 30565363 + MGP_AJ_P0071119 Uvssa protein_coding nonsense_mediated_decay MGP_AJ_T0071120.1 MGP_AJ_G0029412.1 mouse_genomes_project 5 30523762 30565363 + MGP_AJ_P0071120 Uvssa protein_coding protein_coding MGP_AJ_T0071121.1 MGP_AJ_G0029412.1 mouse_genomes_project 5 30523838 30565363 + MGP_AJ_P0071121 Uvssa protein_coding protein_coding MGP_AJ_T0014890.1 MGP_AJ_G0012985.1 mouse_genomes_project 5 19222232 19222604 - processed_pseudogene processed_pseudogene MGP_AJ_T0074582.1 MGP_AJ_G0030073.1 mouse_genomes_project 5 123443198 123606536 - MGP_AJ_P0074582 Ncor2 protein_coding protein_coding MGP_AJ_T0074583.1 MGP_AJ_G0030073.1 mouse_genomes_project 5 123443198 123606536 - MGP_AJ_P0074583 Ncor2 protein_coding protein_coding MGP_AJ_T0074584.1 MGP_AJ_G0030073.1 mouse_genomes_project 5 123443198 123469363 - MGP_AJ_P0074584 Ncor2 protein_coding protein_coding MGP_AJ_T0074585.1 MGP_AJ_G0030073.1 mouse_genomes_project 5 123443200 123606536 - MGP_AJ_P0074585 Ncor2 protein_coding protein_coding MGP_AJ_T0074586.1 MGP_AJ_G0030073.1 mouse_genomes_project 5 123443207 123606463 - MGP_AJ_P0074586 Ncor2 protein_coding protein_coding MGP_AJ_T0074587.1 MGP_AJ_G0030073.1 mouse_genomes_project 5 123443880 123551959 - MGP_AJ_P0074587 Ncor2 protein_coding protein_coding MGP_AJ_T0074588.1 MGP_AJ_G0030073.1 mouse_genomes_project 5 123443880 123606536 - MGP_AJ_P0074588 Ncor2 protein_coding protein_coding MGP_AJ_T0074589.1 MGP_AJ_G0030073.1 mouse_genomes_project 5 123443937 123452062 - MGP_AJ_P0074589 Ncor2 protein_coding protein_coding MGP_AJ_T0074590.1 MGP_AJ_G0030073.1 mouse_genomes_project 5 123444179 123451601 - MGP_AJ_P0074590 Ncor2 protein_coding nonsense_mediated_decay MGP_AJ_T0074591.1 MGP_AJ_G0030073.1 mouse_genomes_project 5 123444277 123449761 - Ncor2 protein_coding retained_intron MGP_AJ_T0074592.1 MGP_AJ_G0030073.1 mouse_genomes_project 5 123451635 123453464 - MGP_AJ_P0074592 Ncor2 protein_coding protein_coding MGP_AJ_T0074593.1 MGP_AJ_G0030073.1 mouse_genomes_project 5 123451641 123452627 - Ncor2 protein_coding retained_intron MGP_AJ_T0074594.1 MGP_AJ_G0030073.1 mouse_genomes_project 5 123457348 123485626 - MGP_AJ_P0074594 Ncor2 protein_coding protein_coding MGP_AJ_T0074595.1 MGP_AJ_G0030073.1 mouse_genomes_project 5 123475044 123483215 - Ncor2 protein_coding retained_intron MGP_AJ_T0074596.1 MGP_AJ_G0030073.1 mouse_genomes_project 5 123478170 123485637 - MGP_AJ_P0074596 Ncor2 protein_coding protein_coding MGP_AJ_T0014945.1 MGP_AJ_G0013040.1 mouse_genomes_project 5 32735157 32736944 + processed_pseudogene processed_pseudogene MGP_AJ_T0074529.1 MGP_AJ_G0030062.1 mouse_genomes_project 5 122957226 122965208 + MGP_AJ_P0074529 Snrnp35 protein_coding protein_coding MGP_AJ_T0074530.1 MGP_AJ_G0030062.1 mouse_genomes_project 5 122957294 122964574 + MGP_AJ_P0074530 Snrnp35 protein_coding protein_coding MGP_AJ_T0074531.1 MGP_AJ_G0030062.1 mouse_genomes_project 5 122957550 122965191 + MGP_AJ_P0074531 Snrnp35 protein_coding protein_coding MGP_AJ_T0102627.1 MGP_AJ_G0040369.1 mouse_genomes_project 5 12728039 12729072 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0073519.1 MGP_AJ_G0029886.1 mouse_genomes_project 5 111852373 111857412 + MGP_AJ_P0073519 Ficd protein_coding protein_coding MGP_AJ_T0102641.1 MGP_AJ_G0040383.1 mouse_genomes_project 5 84678732 84682493 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0010683.1 MGP_AJ_G0008805.1 mouse_genomes_project 5 64310739 64310853 - Gm23841 miRNA miRNA MGP_AJ_T0001649.1 MGP_AJ_G0001565.1 mouse_genomes_project 5 63310623 63314170 - TEC TEC MGP_AJ_T0001703.1 MGP_AJ_G0001618.1 mouse_genomes_project 5 73105269 73107391 + TEC TEC MGP_AJ_T0074539.1 MGP_AJ_G0030065.1 mouse_genomes_project 5 123027769 123041290 + MGP_AJ_P0074539 Ddx55 protein_coding nonsense_mediated_decay MGP_AJ_T0074540.1 MGP_AJ_G0030065.1 mouse_genomes_project 5 123027778 123043003 + MGP_AJ_P0074540 Ddx55 protein_coding protein_coding MGP_AJ_T0074541.1 MGP_AJ_G0030065.1 mouse_genomes_project 5 123027796 123035646 + Ddx55 protein_coding processed_transcript MGP_AJ_T0074542.1 MGP_AJ_G0030065.1 mouse_genomes_project 5 123027858 123035702 + Ddx55 protein_coding processed_transcript MGP_AJ_T0074543.1 MGP_AJ_G0030065.1 mouse_genomes_project 5 123030561 123031990 + Ddx55 protein_coding retained_intron MGP_AJ_T0074544.1 MGP_AJ_G0030065.1 mouse_genomes_project 5 123036816 123041210 + Ddx55 protein_coding processed_transcript MGP_AJ_T0015019.1 MGP_AJ_G0013114.1 mouse_genomes_project 5 69384736 69385208 - processed_pseudogene processed_pseudogene MGP_AJ_T0008211.1 MGP_AJ_G0006690.1 mouse_genomes_project 5 89229799 89230858 - 1700063O14Rik lincRNA lincRNA MGP_AJ_T0008204.1 MGP_AJ_G0006683.1 mouse_genomes_project 5 84031187 84047096 - Gm43057 lincRNA lincRNA MGP_AJ_T0004732.1 MGP_AJ_G0004092.1 mouse_genomes_project 5 85308062 85310927 + BC051076 antisense antisense MGP_AJ_T0004733.1 MGP_AJ_G0004092.1 mouse_genomes_project 5 85308062 85310930 + BC051076 antisense antisense MGP_AJ_T0072808.1 MGP_AJ_G0029731.1 mouse_genomes_project 5 94018846 94428692 + MGP_AJ_P0072808 Fras1 protein_coding protein_coding MGP_AJ_T0072809.1 MGP_AJ_G0029731.1 mouse_genomes_project 5 94019097 94192485 + Fras1 protein_coding retained_intron MGP_AJ_T0072810.1 MGP_AJ_G0029731.1 mouse_genomes_project 5 94019326 94032122 + Fras1 protein_coding retained_intron MGP_AJ_T0072811.1 MGP_AJ_G0029731.1 mouse_genomes_project 5 94259684 94280547 + Fras1 protein_coding processed_transcript MGP_AJ_T0072812.1 MGP_AJ_G0029731.1 mouse_genomes_project 5 94259901 94280659 + Fras1 protein_coding processed_transcript MGP_AJ_T0072813.1 MGP_AJ_G0029731.1 mouse_genomes_project 5 94272422 94280547 + Fras1 protein_coding processed_transcript MGP_AJ_T0008496.1 MGP_AJ_G0006884.1 mouse_genomes_project 5 150908642 150916885 + lincRNA lincRNA MGP_AJ_T0071059.1 MGP_AJ_G0029401.1 mouse_genomes_project 5 29539806 29575685 + MGP_AJ_P0071059 Ppp1cb protein_coding protein_coding MGP_AJ_T0071060.1 MGP_AJ_G0029401.1 mouse_genomes_project 5 29540115 29596840 + MGP_AJ_P0071060 Ppp1cb protein_coding nonsense_mediated_decay MGP_AJ_T0071061.1 MGP_AJ_G0029401.1 mouse_genomes_project 5 29540149 29544707 + Ppp1cb protein_coding retained_intron MGP_AJ_T0071062.1 MGP_AJ_G0029401.1 mouse_genomes_project 5 29540185 29571202 + MGP_AJ_P0071062 Ppp1cb protein_coding protein_coding MGP_AJ_T0071063.1 MGP_AJ_G0029401.1 mouse_genomes_project 5 29558376 29565478 + Ppp1cb protein_coding processed_transcript MGP_AJ_T0071064.1 MGP_AJ_G0029401.1 mouse_genomes_project 5 29566135 29572922 + MGP_AJ_P0071064 Ppp1cb protein_coding nonsense_mediated_decay MGP_AJ_T0004645.1 MGP_AJ_G0004021.1 mouse_genomes_project 5 20131547 20154422 - Gm42948 antisense antisense MGP_AJ_T0075130.1 MGP_AJ_G0030172.1 mouse_genomes_project 5 134741001 134761758 - MGP_AJ_P0075130 Prkrip1 protein_coding protein_coding MGP_AJ_T0075131.1 MGP_AJ_G0030172.1 mouse_genomes_project 5 134743951 134761705 - Prkrip1 protein_coding processed_transcript MGP_AJ_T0075132.1 MGP_AJ_G0030172.1 mouse_genomes_project 5 134744289 134760617 - MGP_AJ_P0075132 Prkrip1 protein_coding nonsense_mediated_decay MGP_AJ_T0075133.1 MGP_AJ_G0030172.1 mouse_genomes_project 5 134744294 134761703 - MGP_AJ_P0075133 Prkrip1 protein_coding protein_coding MGP_AJ_T0072656.1 MGP_AJ_G0029699.1 mouse_genomes_project 5 88392144 88398792 + Mthfd2l protein_coding processed_transcript MGP_AJ_T0072657.1 MGP_AJ_G0029699.1 mouse_genomes_project 5 88392283 88394449 + MGP_AJ_P0072657 Mthfd2l protein_coding protein_coding MGP_AJ_T0072658.1 MGP_AJ_G0029699.1 mouse_genomes_project 5 88392307 88481401 + MGP_AJ_P0072658 Mthfd2l protein_coding protein_coding MGP_AJ_T0072659.1 MGP_AJ_G0029699.1 mouse_genomes_project 5 88408106 88435238 + Mthfd2l protein_coding retained_intron MGP_AJ_T0008148.1 MGP_AJ_G0006640.1 mouse_genomes_project 5 55630160 55639921 - 4930459L07Rik lincRNA lincRNA MGP_AJ_T0008186.1 MGP_AJ_G0006669.1 mouse_genomes_project 5 73091358 73093969 - Gm19590 lincRNA lincRNA MGP_AJ_T0001822.1 MGP_AJ_G0001737.1 mouse_genomes_project 5 122769715 122771028 - TEC TEC MGP_AJ_T0072758.1 MGP_AJ_G0029720.1 mouse_genomes_project 5 90064708 90066486 + MGP_AJ_P0072758 Stbd1 protein_coding protein_coding MGP_AJ_T0072759.1 MGP_AJ_G0029720.1 mouse_genomes_project 5 90064718 90068246 + MGP_AJ_P0072759 Stbd1 protein_coding protein_coding MGP_AJ_T0072760.1 MGP_AJ_G0029720.1 mouse_genomes_project 5 90064735 90067961 + MGP_AJ_P0072760 Stbd1 protein_coding nonsense_mediated_decay MGP_AJ_T0071889.1 MGP_AJ_G0029542.1 mouse_genomes_project 5 62481670 62554149 - MGP_AJ_P0071889 Rfc1 protein_coding protein_coding MGP_AJ_T0071890.1 MGP_AJ_G0029542.1 mouse_genomes_project 5 62481672 62554206 - MGP_AJ_P0071890 Rfc1 protein_coding protein_coding MGP_AJ_T0071891.1 MGP_AJ_G0029542.1 mouse_genomes_project 5 62481672 62554255 - MGP_AJ_P0071891 Rfc1 protein_coding protein_coding MGP_AJ_T0071892.1 MGP_AJ_G0029542.1 mouse_genomes_project 5 62482422 62554203 - MGP_AJ_P0071892 Rfc1 protein_coding protein_coding MGP_AJ_T0071893.1 MGP_AJ_G0029542.1 mouse_genomes_project 5 62482896 62488857 - MGP_AJ_P0071893 Rfc1 protein_coding protein_coding MGP_AJ_T0071894.1 MGP_AJ_G0029542.1 mouse_genomes_project 5 62484066 62493403 - Rfc1 protein_coding retained_intron MGP_AJ_T0071895.1 MGP_AJ_G0029542.1 mouse_genomes_project 5 62529508 62554198 - Rfc1 protein_coding retained_intron MGP_AJ_T0014950.1 MGP_AJ_G0013045.1 mouse_genomes_project 5 35747583 35747982 + processed_pseudogene processed_pseudogene MGP_AJ_T0004738.1 MGP_AJ_G0004097.1 mouse_genomes_project 5 94378710 94382546 - Gm42604 antisense antisense MGP_AJ_T0073757.1 MGP_AJ_G0029934.1 mouse_genomes_project 5 113635207 113644094 + MGP_AJ_P0073757 Pla2g1b protein_coding protein_coding MGP_AJ_T0073758.1 MGP_AJ_G0029934.1 mouse_genomes_project 5 113635211 113644082 + Pla2g1b protein_coding processed_transcript MGP_AJ_T0073759.1 MGP_AJ_G0029934.1 mouse_genomes_project 5 113635211 113644108 + MGP_AJ_P0073759 Pla2g1b protein_coding protein_coding MGP_AJ_T0073760.1 MGP_AJ_G0029934.1 mouse_genomes_project 5 113635217 113643947 + MGP_AJ_P0073760 Pla2g1b protein_coding protein_coding MGP_AJ_T0073761.1 MGP_AJ_G0029934.1 mouse_genomes_project 5 113635217 113641257 + MGP_AJ_P0073761 Pla2g1b protein_coding protein_coding MGP_AJ_T0008471.1 MGP_AJ_G0006869.1 mouse_genomes_project 5 148442724 148449359 + 2310047D07Rik lincRNA lincRNA MGP_AJ_T0008473.1 MGP_AJ_G0006869.1 mouse_genomes_project 5 148448528 148449341 + 2310047D07Rik lincRNA lincRNA MGP_AJ_T0070653.1 MGP_AJ_G0029337.1 mouse_genomes_project 5 25340732 25376908 + MGP_AJ_P0070653 Rbm33 protein_coding non_stop_decay MGP_AJ_T0070654.1 MGP_AJ_G0029337.1 mouse_genomes_project 5 25340788 25444004 + MGP_AJ_P0070654 Rbm33 protein_coding protein_coding MGP_AJ_T0070655.1 MGP_AJ_G0029337.1 mouse_genomes_project 5 25340788 25440865 + MGP_AJ_P0070655 Rbm33 protein_coding protein_coding MGP_AJ_T0070656.1 MGP_AJ_G0029337.1 mouse_genomes_project 5 25340813 25379788 + MGP_AJ_P0070656 Rbm33 protein_coding protein_coding MGP_AJ_T0070657.1 MGP_AJ_G0029337.1 mouse_genomes_project 5 25418820 25438436 + MGP_AJ_P0070657 Rbm33 protein_coding protein_coding MGP_AJ_T0070658.1 MGP_AJ_G0029337.1 mouse_genomes_project 5 25435418 25438789 + MGP_AJ_P0070658 Rbm33 protein_coding protein_coding MGP_AJ_T0014925.1 MGP_AJ_G0013020.1 mouse_genomes_project 5 26820592 26821107 - processed_pseudogene processed_pseudogene MGP_AJ_T0076106.1 MGP_AJ_G0030378.1 mouse_genomes_project 5 148824364 148846817 - MGP_AJ_P0076106 Hsph1 protein_coding protein_coding MGP_AJ_T0076107.1 MGP_AJ_G0030378.1 mouse_genomes_project 5 148826621 148846984 - MGP_AJ_P0076107 Hsph1 protein_coding protein_coding MGP_AJ_T0076108.1 MGP_AJ_G0030378.1 mouse_genomes_project 5 148826922 148846855 - MGP_AJ_P0076108 Hsph1 protein_coding protein_coding MGP_AJ_T0076109.1 MGP_AJ_G0030378.1 mouse_genomes_project 5 148827246 148846984 - MGP_AJ_P0076109 Hsph1 protein_coding protein_coding MGP_AJ_T0076110.1 MGP_AJ_G0030378.1 mouse_genomes_project 5 148827532 148829251 - Hsph1 protein_coding retained_intron MGP_AJ_T0076111.1 MGP_AJ_G0030378.1 mouse_genomes_project 5 148829970 148831265 - Hsph1 protein_coding retained_intron MGP_AJ_T0076112.1 MGP_AJ_G0030378.1 mouse_genomes_project 5 148830759 148846984 - Hsph1 protein_coding retained_intron MGP_AJ_T0076113.1 MGP_AJ_G0030378.1 mouse_genomes_project 5 148840629 148847022 - MGP_AJ_P0076113 Hsph1 protein_coding protein_coding MGP_AJ_T0076114.1 MGP_AJ_G0030378.1 mouse_genomes_project 5 148841085 148846936 - MGP_AJ_P0076114 Hsph1 protein_coding protein_coding MGP_AJ_T0076115.1 MGP_AJ_G0030378.1 mouse_genomes_project 5 148842684 148846997 - MGP_AJ_P0076115 Hsph1 protein_coding protein_coding MGP_AJ_T0076116.1 MGP_AJ_G0030378.1 mouse_genomes_project 5 148842743 148844533 - Hsph1 protein_coding processed_transcript MGP_AJ_T0015151.1 MGP_AJ_G0013246.1 mouse_genomes_project 5 122946553 122946917 + processed_pseudogene processed_pseudogene MGP_AJ_T0075612.1 MGP_AJ_G0030269.1 mouse_genomes_project 5 139389939 139409942 + MGP_AJ_P0075612 Chst12 protein_coding protein_coding MGP_AJ_T0075613.1 MGP_AJ_G0030269.1 mouse_genomes_project 5 139389964 139408371 + MGP_AJ_P0075613 Chst12 protein_coding protein_coding MGP_AJ_T0014943.1 MGP_AJ_G0013038.1 mouse_genomes_project 5 31462505 31462964 - processed_pseudogene processed_pseudogene MGP_AJ_T0008125.1 MGP_AJ_G0006619.1 mouse_genomes_project 5 40240115 40244440 - Gm42711 lincRNA lincRNA MGP_AJ_T0071602.1 MGP_AJ_G0029494.1 mouse_genomes_project 5 41152839 41155761 - MGP_AJ_P0071602 Fgfbp1 protein_coding protein_coding MGP_AJ_T0071603.1 MGP_AJ_G0029494.1 mouse_genomes_project 5 41152841 41155746 - MGP_AJ_P0071603 Fgfbp1 protein_coding protein_coding MGP_AJ_T0071604.1 MGP_AJ_G0029494.1 mouse_genomes_project 5 41152844 41155035 - MGP_AJ_P0071604 Fgfbp1 protein_coding protein_coding MGP_AJ_T0072460.1 MGP_AJ_G0029638.1 mouse_genomes_project 5 83758140 83789448 - MGP_AJ_P0072460 Tmprss11g protein_coding protein_coding MGP_AJ_T0072461.1 MGP_AJ_G0029638.1 mouse_genomes_project 5 83758631 83789419 - MGP_AJ_P0072461 Tmprss11g protein_coding protein_coding MGP_AJ_T0072462.1 MGP_AJ_G0029638.1 mouse_genomes_project 5 83760619 83762904 - Tmprss11g protein_coding retained_intron MGP_AJ_T0073038.1 MGP_AJ_G0029785.1 mouse_genomes_project 5 102625496 102792442 - MGP_AJ_P0073038 protein_coding protein_coding MGP_AJ_T0015215.1 MGP_AJ_G0013310.1 mouse_genomes_project 5 147783205 147783383 - processed_pseudogene processed_pseudogene MGP_AJ_T0001777.1 MGP_AJ_G0001692.1 mouse_genomes_project 5 114084016 114085880 + TEC TEC MGP_AJ_T0015200.1 MGP_AJ_G0013295.1 mouse_genomes_project 5 144746760 144746922 + processed_pseudogene processed_pseudogene MGP_AJ_T0004895.1 MGP_AJ_G0004206.1 mouse_genomes_project 5 149794358 149800584 - Gm42529 antisense antisense MGP_AJ_T0008149.1 MGP_AJ_G0006641.1 mouse_genomes_project 5 55639960 55642318 + 1700029E06Rik lincRNA lincRNA MGP_AJ_T0070232.1 MGP_AJ_G0029251.1 mouse_genomes_project 5 5732044 5799929 + MGP_AJ_P0070232 Abcb4 protein_coding protein_coding MGP_AJ_T0070233.1 MGP_AJ_G0029251.1 mouse_genomes_project 5 5732048 5740341 + Abcb4 protein_coding retained_intron MGP_AJ_T0070234.1 MGP_AJ_G0029251.1 mouse_genomes_project 5 5732276 5781225 + MGP_AJ_P0070234 Abcb4 protein_coding protein_coding MGP_AJ_T0070235.1 MGP_AJ_G0029251.1 mouse_genomes_project 5 5768915 5772205 + Abcb4 protein_coding retained_intron MGP_AJ_T0070236.1 MGP_AJ_G0029251.1 mouse_genomes_project 5 5799254 5799934 + Abcb4 protein_coding retained_intron MGP_AJ_T0072560.1 MGP_AJ_G0029671.1 mouse_genomes_project 5 85843512 85853321 + MGP_AJ_P0072560 Amtn protein_coding protein_coding MGP_AJ_T0008438.1 MGP_AJ_G0006841.1 mouse_genomes_project 5 142170941 142177849 + 4930448H16Rik lincRNA lincRNA MGP_AJ_T0018209.1 MGP_AJ_G0015595.1 mouse_genomes_project 5 148568125 148632449 + Gm20488 processed_transcript processed_transcript MGP_AJ_T0015154.1 MGP_AJ_G0013249.1 mouse_genomes_project 5 124463960 124464391 - processed_pseudogene processed_pseudogene MGP_AJ_T0075463.1 MGP_AJ_G0030239.1 mouse_genomes_project 5 137445988 137462052 - MGP_AJ_P0075463 Zfp68 protein_coding protein_coding MGP_AJ_T0075464.1 MGP_AJ_G0030239.1 mouse_genomes_project 5 137447321 137462049 - MGP_AJ_P0075464 Zfp68 protein_coding protein_coding MGP_AJ_T0075465.1 MGP_AJ_G0030239.1 mouse_genomes_project 5 137448451 137449393 - Zfp68 protein_coding processed_transcript MGP_AJ_T0075466.1 MGP_AJ_G0030239.1 mouse_genomes_project 5 137448455 137462031 - MGP_AJ_P0075466 Zfp68 protein_coding protein_coding MGP_AJ_T0075467.1 MGP_AJ_G0030239.1 mouse_genomes_project 5 137454443 137461944 - MGP_AJ_P0075467 Zfp68 protein_coding protein_coding MGP_AJ_T0075468.1 MGP_AJ_G0030239.1 mouse_genomes_project 5 137458488 137462029 - Zfp68 protein_coding retained_intron MGP_AJ_T0014944.1 MGP_AJ_G0013039.1 mouse_genomes_project 5 31640548 31641157 - processed_pseudogene processed_pseudogene MGP_AJ_T0100007.1 MGP_AJ_G0037973.1 mouse_genomes_project 5 49526303 49526408 - Gm25601 snRNA snRNA MGP_AJ_T0001861.1 MGP_AJ_G0001775.1 mouse_genomes_project 5 130499518 130506843 - TEC TEC MGP_AJ_T0074015.1 MGP_AJ_G0029987.1 mouse_genomes_project 5 119467234 119528714 - MGP_AJ_P0074015 Ptpn11 protein_coding protein_coding MGP_AJ_T0074016.1 MGP_AJ_G0029987.1 mouse_genomes_project 5 119467236 119528684 - Ptpn11 protein_coding retained_intron MGP_AJ_T0074017.1 MGP_AJ_G0029987.1 mouse_genomes_project 5 119467242 119528646 - MGP_AJ_P0074017 Ptpn11 protein_coding protein_coding MGP_AJ_T0074018.1 MGP_AJ_G0029987.1 mouse_genomes_project 5 119470541 119480319 - Ptpn11 protein_coding processed_transcript MGP_AJ_T0073249.1 MGP_AJ_G0029826.1 mouse_genomes_project 5 106527888 106553146 + MGP_AJ_P0073249 Idua protein_coding protein_coding MGP_AJ_T0073250.1 MGP_AJ_G0029826.1 mouse_genomes_project 5 106537242 106553151 + MGP_AJ_P0073250 Idua protein_coding protein_coding MGP_AJ_T0073251.1 MGP_AJ_G0029826.1 mouse_genomes_project 5 106537242 106553146 + MGP_AJ_P0073251 Idua protein_coding nonsense_mediated_decay MGP_AJ_T0073252.1 MGP_AJ_G0029826.1 mouse_genomes_project 5 106537431 106549994 + Idua protein_coding retained_intron MGP_AJ_T0073253.1 MGP_AJ_G0029826.1 mouse_genomes_project 5 106537447 106553146 + MGP_AJ_P0073253 Idua protein_coding protein_coding MGP_AJ_T0073254.1 MGP_AJ_G0029826.1 mouse_genomes_project 5 106537483 106552993 + MGP_AJ_P0073254 Idua protein_coding nonsense_mediated_decay MGP_AJ_T0073255.1 MGP_AJ_G0029826.1 mouse_genomes_project 5 106537595 106548490 + Idua protein_coding processed_transcript MGP_AJ_T0015038.1 MGP_AJ_G0013133.1 mouse_genomes_project 5 75735078 75735924 + processed_pseudogene processed_pseudogene MGP_AJ_T0070546.1 MGP_AJ_G0029311.1 mouse_genomes_project 5 21418269 21420666 - MGP_AJ_P0070546 Tmub1 protein_coding protein_coding MGP_AJ_T0070547.1 MGP_AJ_G0029311.1 mouse_genomes_project 5 21418277 21420437 - MGP_AJ_P0070547 Tmub1 protein_coding protein_coding MGP_AJ_T0070548.1 MGP_AJ_G0029311.1 mouse_genomes_project 5 21418277 21420129 - MGP_AJ_P0070548 Tmub1 protein_coding protein_coding MGP_AJ_T0070549.1 MGP_AJ_G0029311.1 mouse_genomes_project 5 21418860 21420399 - MGP_AJ_P0070549 Tmub1 protein_coding protein_coding MGP_AJ_T0070550.1 MGP_AJ_G0029311.1 mouse_genomes_project 5 21419364 21420603 - MGP_AJ_P0070550 Tmub1 protein_coding protein_coding MGP_AJ_T0011594.1 MGP_AJ_G0009716.1 mouse_genomes_project 5 36537773 36538019 + Gm25505 misc_RNA misc_RNA MGP_AJ_T0001583.1 MGP_AJ_G0001500.1 mouse_genomes_project 5 47103730 47104880 - TEC TEC MGP_AJ_T0071310.1 MGP_AJ_G0029439.1 mouse_genomes_project 5 32080024 32091180 + Msantd1 protein_coding processed_transcript MGP_AJ_T0071311.1 MGP_AJ_G0029439.1 mouse_genomes_project 5 32087772 32096927 + MGP_AJ_P0071311 Msantd1 protein_coding unknown_likely_coding MGP_AJ_T0071312.1 MGP_AJ_G0029439.1 mouse_genomes_project 5 32089278 32097202 + MGP_AJ_P0071312 Msantd1 protein_coding protein_coding MGP_AJ_T0071313.1 MGP_AJ_G0029439.1 mouse_genomes_project 5 32090902 32097053 + MGP_AJ_P0071313 Msantd1 protein_coding protein_coding MGP_AJ_T0015085.1 MGP_AJ_G0013180.1 mouse_genomes_project 5 99218879 99219678 - processed_pseudogene processed_pseudogene MGP_AJ_T0074496.1 MGP_AJ_G0030059.1 mouse_genomes_project 5 122840588 122899527 - MGP_AJ_P0074496 Sbno1 protein_coding protein_coding MGP_AJ_T0074497.1 MGP_AJ_G0030059.1 mouse_genomes_project 5 122840594 122899223 - MGP_AJ_P0074497 Sbno1 protein_coding protein_coding MGP_AJ_T0074498.1 MGP_AJ_G0030059.1 mouse_genomes_project 5 122846418 122887698 - MGP_AJ_P0074498 Sbno1 protein_coding protein_coding MGP_AJ_T0074499.1 MGP_AJ_G0030059.1 mouse_genomes_project 5 122848014 122856729 - Sbno1 protein_coding retained_intron MGP_AJ_T0074500.1 MGP_AJ_G0030059.1 mouse_genomes_project 5 122858410 122859382 - Sbno1 protein_coding retained_intron MGP_AJ_T0074501.1 MGP_AJ_G0030059.1 mouse_genomes_project 5 122862707 122863359 - Sbno1 protein_coding retained_intron MGP_AJ_T0074502.1 MGP_AJ_G0030059.1 mouse_genomes_project 5 122863355 122864867 - Sbno1 protein_coding retained_intron MGP_AJ_T0074503.1 MGP_AJ_G0030059.1 mouse_genomes_project 5 122865401 122899206 - MGP_AJ_P0074503 Sbno1 protein_coding protein_coding MGP_AJ_T0074504.1 MGP_AJ_G0030059.1 mouse_genomes_project 5 122865417 122868711 - Sbno1 protein_coding retained_intron MGP_AJ_T0074505.1 MGP_AJ_G0030059.1 mouse_genomes_project 5 122865419 122899614 - MGP_AJ_P0074505 Sbno1 protein_coding protein_coding MGP_AJ_T0074506.1 MGP_AJ_G0030059.1 mouse_genomes_project 5 122868376 122869565 - Sbno1 protein_coding retained_intron MGP_AJ_T0074507.1 MGP_AJ_G0030059.1 mouse_genomes_project 5 122868376 122899570 - MGP_AJ_P0074507 Sbno1 protein_coding protein_coding MGP_AJ_T0074508.1 MGP_AJ_G0030059.1 mouse_genomes_project 5 122871049 122899205 - MGP_AJ_P0074508 Sbno1 protein_coding nonsense_mediated_decay MGP_AJ_T0074509.1 MGP_AJ_G0030059.1 mouse_genomes_project 5 122872422 122878172 - MGP_AJ_P0074509 Sbno1 protein_coding nonsense_mediated_decay MGP_AJ_T0074510.1 MGP_AJ_G0030059.1 mouse_genomes_project 5 122879535 122899197 - MGP_AJ_P0074510 Sbno1 protein_coding protein_coding MGP_AJ_T0074511.1 MGP_AJ_G0030059.1 mouse_genomes_project 5 122883287 122899181 - MGP_AJ_P0074511 Sbno1 protein_coding protein_coding MGP_AJ_T0074512.1 MGP_AJ_G0030059.1 mouse_genomes_project 5 122883519 122893543 - MGP_AJ_P0074512 Sbno1 protein_coding protein_coding MGP_AJ_T0074513.1 MGP_AJ_G0030059.1 mouse_genomes_project 5 122897130 122899155 - Sbno1 protein_coding retained_intron MGP_AJ_T0001669.1 MGP_AJ_G0001585.1 mouse_genomes_project 5 65106318 65107728 - TEC TEC MGP_AJ_T0001485.1 MGP_AJ_G0001405.1 mouse_genomes_project 5 25574359 25576045 + TEC TEC MGP_AJ_T0075262.1 MGP_AJ_G0030197.1 mouse_genomes_project 5 136071589 136088966 + MGP_AJ_P0075262 protein_coding unknown_likely_coding MGP_AJ_T0075263.1 MGP_AJ_G0030197.1 mouse_genomes_project 5 136079573 136081402 + MGP_AJ_P0075263 protein_coding protein_coding MGP_AJ_T0101283.1 MGP_AJ_G0039249.1 mouse_genomes_project 5 54306117 54306245 - Gm23015 snoRNA snoRNA MGP_AJ_T0015189.1 MGP_AJ_G0013284.1 mouse_genomes_project 5 142405079 142405617 + processed_pseudogene processed_pseudogene MGP_AJ_T0004670.1 MGP_AJ_G0004042.1 mouse_genomes_project 5 32208897 32210473 - Gm43791 antisense antisense MGP_AJ_T0001875.1 MGP_AJ_G0001788.1 mouse_genomes_project 5 132769518 132773198 - TEC TEC MGP_AJ_T0001642.1 MGP_AJ_G0001558.1 mouse_genomes_project 5 63009245 63011812 + TEC TEC MGP_AJ_T0008212.1 MGP_AJ_G0006691.1 mouse_genomes_project 5 89373817 89375821 - Gm43688 lincRNA lincRNA MGP_AJ_T0102649.1 MGP_AJ_G0040391.1 mouse_genomes_project 5 135574904 135578480 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0072208.1 MGP_AJ_G0029594.1 mouse_genomes_project 5 70728073 70812181 + MGP_AJ_P0072208 Dcun1d4 protein_coding protein_coding MGP_AJ_T0072209.1 MGP_AJ_G0029594.1 mouse_genomes_project 5 70731513 70808672 + Dcun1d4 protein_coding processed_transcript MGP_AJ_T0072210.1 MGP_AJ_G0029594.1 mouse_genomes_project 5 70738086 70812181 + MGP_AJ_P0072210 Dcun1d4 protein_coding protein_coding MGP_AJ_T0072211.1 MGP_AJ_G0029594.1 mouse_genomes_project 5 70738128 70795316 + MGP_AJ_P0072211 Dcun1d4 protein_coding nonsense_mediated_decay MGP_AJ_T0072212.1 MGP_AJ_G0029594.1 mouse_genomes_project 5 70738184 70780724 + MGP_AJ_P0072212 Dcun1d4 protein_coding nonsense_mediated_decay MGP_AJ_T0072213.1 MGP_AJ_G0029594.1 mouse_genomes_project 5 70738228 70812174 + MGP_AJ_P0072213 Dcun1d4 protein_coding protein_coding MGP_AJ_T0072214.1 MGP_AJ_G0029594.1 mouse_genomes_project 5 70740381 70767738 + Dcun1d4 protein_coding processed_transcript MGP_AJ_T0072215.1 MGP_AJ_G0029594.1 mouse_genomes_project 5 70758506 70785667 + MGP_AJ_P0072215 Dcun1d4 protein_coding protein_coding MGP_AJ_T0101271.1 MGP_AJ_G0039237.1 mouse_genomes_project 5 5059709 5059853 + Gm23993 snoRNA snoRNA MGP_AJ_T0008486.1 MGP_AJ_G0006877.1 mouse_genomes_project 5 149804973 149805239 - Gm43690 lincRNA lincRNA MGP_AJ_T0010690.1 MGP_AJ_G0008812.1 mouse_genomes_project 5 84931396 84931488 - Mir3969 miRNA miRNA MGP_AJ_T0001731.1 MGP_AJ_G0001646.1 mouse_genomes_project 5 98496048 98498345 + TEC TEC MGP_AJ_T0072359.1 MGP_AJ_G0029619.1 mouse_genomes_project 5 74237960 74263185 + MGP_AJ_P0072359 Srp72 protein_coding protein_coding MGP_AJ_T0072360.1 MGP_AJ_G0029619.1 mouse_genomes_project 5 74237984 74262064 + MGP_AJ_P0072360 Srp72 protein_coding protein_coding MGP_AJ_T0072361.1 MGP_AJ_G0029619.1 mouse_genomes_project 5 74237998 74243859 + Srp72 protein_coding retained_intron MGP_AJ_T0072362.1 MGP_AJ_G0029619.1 mouse_genomes_project 5 74243847 74245984 + Srp72 protein_coding retained_intron MGP_AJ_T0072363.1 MGP_AJ_G0029619.1 mouse_genomes_project 5 74247364 74258398 + Srp72 protein_coding retained_intron MGP_AJ_T0072364.1 MGP_AJ_G0029619.1 mouse_genomes_project 5 74257245 74258155 + Srp72 protein_coding retained_intron MGP_AJ_T0072365.1 MGP_AJ_G0029619.1 mouse_genomes_project 5 74258507 74260737 + Srp72 protein_coding retained_intron MGP_AJ_T0072366.1 MGP_AJ_G0029619.1 mouse_genomes_project 5 74260222 74263185 + Srp72 protein_coding retained_intron MGP_AJ_T0072367.1 MGP_AJ_G0029619.1 mouse_genomes_project 5 74260652 74261589 + Srp72 protein_coding retained_intron MGP_AJ_T0001530.1 MGP_AJ_G0001448.1 mouse_genomes_project 5 41118158 41118705 + TEC TEC MGP_AJ_T0015061.1 MGP_AJ_G0013156.1 mouse_genomes_project 5 86273959 86275589 - processed_pseudogene processed_pseudogene MGP_AJ_T0071297.1 MGP_AJ_G0029437.1 mouse_genomes_project 5 31822555 31918263 + MGP_AJ_P0071297 Grk4 protein_coding protein_coding MGP_AJ_T0071298.1 MGP_AJ_G0029437.1 mouse_genomes_project 5 31822555 31864574 + MGP_AJ_P0071298 Grk4 protein_coding protein_coding MGP_AJ_T0071299.1 MGP_AJ_G0029437.1 mouse_genomes_project 5 31823151 31838398 + MGP_AJ_P0071299 Grk4 protein_coding protein_coding MGP_AJ_T0071300.1 MGP_AJ_G0029437.1 mouse_genomes_project 5 31874987 31907313 + Grk4 protein_coding processed_transcript MGP_AJ_T0071301.1 MGP_AJ_G0029437.1 mouse_genomes_project 5 31906418 31918265 + Grk4 protein_coding processed_transcript MGP_AJ_T0072662.1 MGP_AJ_G0029701.1 mouse_genomes_project 5 88534678 88553756 + MGP_AJ_P0072662 Ereg protein_coding protein_coding MGP_AJ_T0004810.1 MGP_AJ_G0004144.1 mouse_genomes_project 5 118871979 118873286 - Gm43579 antisense antisense MGP_AJ_T0071813.1 MGP_AJ_G0029526.1 mouse_genomes_project 5 54902627 55317546 + MGP_AJ_P0071813 Pcdh7 protein_coding protein_coding MGP_AJ_T0071814.1 MGP_AJ_G0029526.1 mouse_genomes_project 5 54902680 54914143 + MGP_AJ_P0071814 Pcdh7 protein_coding protein_coding MGP_AJ_T0071815.1 MGP_AJ_G0029526.1 mouse_genomes_project 5 54903758 55313658 + MGP_AJ_P0071815 Pcdh7 protein_coding protein_coding MGP_AJ_T0071816.1 MGP_AJ_G0029526.1 mouse_genomes_project 5 54904784 55101256 + MGP_AJ_P0071816 Pcdh7 protein_coding protein_coding MGP_AJ_T0071817.1 MGP_AJ_G0029526.1 mouse_genomes_project 5 54905823 55314104 + MGP_AJ_P0071817 Pcdh7 protein_coding nonsense_mediated_decay MGP_AJ_T0071818.1 MGP_AJ_G0029526.1 mouse_genomes_project 5 54906574 55098668 + MGP_AJ_P0071818 Pcdh7 protein_coding protein_coding MGP_AJ_T0071819.1 MGP_AJ_G0029526.1 mouse_genomes_project 5 54906870 55313761 + MGP_AJ_P0071819 Pcdh7 protein_coding protein_coding MGP_AJ_T0071631.1 MGP_AJ_G0029497.1 mouse_genomes_project 5 41444168 41445992 - MGP_AJ_P0071631 Smim15 protein_coding protein_coding MGP_AJ_T0001869.1 MGP_AJ_G0001783.1 mouse_genomes_project 5 131012186 131013010 - TEC TEC MGP_AJ_T0014990.1 MGP_AJ_G0013085.1 mouse_genomes_project 5 56229570 56230524 + processed_pseudogene processed_pseudogene MGP_AJ_T0075329.1 MGP_AJ_G0030207.1 mouse_genomes_project 5 136208691 136211085 - MGP_AJ_P0075329 Irs3 protein_coding protein_coding MGP_AJ_T0075330.1 MGP_AJ_G0030207.1 mouse_genomes_project 5 136208692 136211262 - MGP_AJ_P0075330 Irs3 protein_coding protein_coding MGP_AJ_T0101321.1 MGP_AJ_G0039287.1 mouse_genomes_project 5 149957140 149957259 - Gm26013 snoRNA snoRNA MGP_AJ_T0099992.1 MGP_AJ_G0037958.1 mouse_genomes_project 5 19575330 19575395 - Gm24512 snRNA snRNA MGP_AJ_T0014912.1 MGP_AJ_G0013007.1 mouse_genomes_project 5 22511827 22512101 - processed_pseudogene processed_pseudogene MGP_AJ_T0004687.1 MGP_AJ_G0004054.1 mouse_genomes_project 5 41385053 41389373 + Gm42982 antisense antisense MGP_AJ_T0001705.1 MGP_AJ_G0001620.1 mouse_genomes_project 5 73924417 73926849 - TEC TEC MGP_AJ_T0071739.1 MGP_AJ_G0029513.1 mouse_genomes_project 5 49557831 49656658 - MGP_AJ_P0071739 Ccdc149 protein_coding protein_coding MGP_AJ_T0071740.1 MGP_AJ_G0029513.1 mouse_genomes_project 5 49557837 49656781 - MGP_AJ_P0071740 Ccdc149 protein_coding protein_coding MGP_AJ_T0001787.1 MGP_AJ_G0001702.1 mouse_genomes_project 5 116805828 116808246 + TEC TEC MGP_AJ_T0076193.1 MGP_AJ_G0030390.1 mouse_genomes_project 5 150681500 150702878 - MGP_AJ_P0076193 Vmn2r18 protein_coding protein_coding MGP_AJ_T0073557.1 MGP_AJ_G0029893.1 mouse_genomes_project 5 112131048 112154067 + MGP_AJ_P0073557 Dao protein_coding protein_coding MGP_AJ_T0073558.1 MGP_AJ_G0029893.1 mouse_genomes_project 5 112137259 112144110 + MGP_AJ_P0073558 Dao protein_coding protein_coding MGP_AJ_T0073559.1 MGP_AJ_G0029893.1 mouse_genomes_project 5 112145703 112148616 + Dao protein_coding retained_intron MGP_AJ_T0015069.1 MGP_AJ_G0013164.1 mouse_genomes_project 5 89224026 89225133 - processed_pseudogene processed_pseudogene MGP_AJ_T0101836.1 MGP_AJ_G0039735.1 mouse_genomes_project 5 148358457 148359587 - transcribed_processed_pseudogene processed_transcript MGP_AJ_T0101837.1 MGP_AJ_G0039735.1 mouse_genomes_project 5 148358788 148359777 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0071538.1 MGP_AJ_G0029479.1 mouse_genomes_project 5 35698590 35733612 - MGP_AJ_P0071538 Wdr1 protein_coding protein_coding MGP_AJ_T0071539.1 MGP_AJ_G0029479.1 mouse_genomes_project 5 35699355 35701902 - Wdr1 protein_coding retained_intron MGP_AJ_T0071540.1 MGP_AJ_G0029479.1 mouse_genomes_project 5 35699362 35733441 - MGP_AJ_P0071540 Wdr1 protein_coding protein_coding MGP_AJ_T0071541.1 MGP_AJ_G0029479.1 mouse_genomes_project 5 35699496 35701790 - Wdr1 protein_coding retained_intron MGP_AJ_T0071542.1 MGP_AJ_G0029479.1 mouse_genomes_project 5 35700970 35701626 - Wdr1 protein_coding retained_intron MGP_AJ_T0071543.1 MGP_AJ_G0029479.1 mouse_genomes_project 5 35701743 35703773 - Wdr1 protein_coding processed_transcript MGP_AJ_T0071544.1 MGP_AJ_G0029479.1 mouse_genomes_project 5 35711966 35733356 - Wdr1 protein_coding retained_intron MGP_AJ_T0071545.1 MGP_AJ_G0029479.1 mouse_genomes_project 5 35717483 35735029 - Wdr1 protein_coding processed_transcript MGP_AJ_T0071546.1 MGP_AJ_G0029479.1 mouse_genomes_project 5 35723033 35733612 - Wdr1 protein_coding retained_intron MGP_AJ_T0071547.1 MGP_AJ_G0029479.1 mouse_genomes_project 5 35729438 35733349 - Wdr1 protein_coding retained_intron MGP_AJ_T0071548.1 MGP_AJ_G0029479.1 mouse_genomes_project 5 35732714 35733381 - Wdr1 protein_coding retained_intron MGP_AJ_T0010661.1 MGP_AJ_G0008783.1 mouse_genomes_project 5 6221144 6221220 + Mir879 miRNA miRNA MGP_AJ_T0001886.1 MGP_AJ_G0001799.1 mouse_genomes_project 5 137461578 137463082 + TEC TEC MGP_AJ_T0073424.1 MGP_AJ_G0029866.1 mouse_genomes_project 5 110348685 110354823 - MGP_AJ_P0073424 Cryba4 protein_coding protein_coding MGP_AJ_T0073425.1 MGP_AJ_G0029866.1 mouse_genomes_project 5 110348686 110353467 - MGP_AJ_P0073425 Cryba4 protein_coding protein_coding MGP_AJ_T0073426.1 MGP_AJ_G0029866.1 mouse_genomes_project 5 110348725 110354107 - MGP_AJ_P0073426 Cryba4 protein_coding protein_coding MGP_AJ_T0008483.1 MGP_AJ_G0006875.1 mouse_genomes_project 5 149117992 149118983 - Gm43452 lincRNA lincRNA MGP_AJ_T0070310.1 MGP_AJ_G0029264.1 mouse_genomes_project 5 14299629 14308713 + MGP_AJ_P0070310 protein_coding protein_coding MGP_AJ_T0073477.1 MGP_AJ_G0029878.1 mouse_genomes_project 5 111181001 111192230 - MGP_AJ_P0073477 Crybb2 protein_coding protein_coding MGP_AJ_T0073478.1 MGP_AJ_G0029878.1 mouse_genomes_project 5 111181008 111190879 - MGP_AJ_P0073478 Crybb2 protein_coding protein_coding MGP_AJ_T0073479.1 MGP_AJ_G0029878.1 mouse_genomes_project 5 111185247 111190570 - Crybb2 protein_coding processed_transcript MGP_AJ_T0073480.1 MGP_AJ_G0029878.1 mouse_genomes_project 5 111190166 111190884 - Crybb2 protein_coding processed_transcript MGP_AJ_T0073481.1 MGP_AJ_G0029878.1 mouse_genomes_project 5 111190804 111191607 - Crybb2 protein_coding processed_transcript MGP_AJ_T0001831.1 MGP_AJ_G0001745.1 mouse_genomes_project 5 126060411 126061185 + TEC TEC MGP_AJ_T0073329.1 MGP_AJ_G0029849.1 mouse_genomes_project 5 108355033 108366799 - MGP_AJ_P0073329 Pxmp2 protein_coding protein_coding MGP_AJ_T0073330.1 MGP_AJ_G0029849.1 mouse_genomes_project 5 108355046 108366634 - MGP_AJ_P0073330 Pxmp2 protein_coding nonsense_mediated_decay MGP_AJ_T0073331.1 MGP_AJ_G0029849.1 mouse_genomes_project 5 108361405 108366615 - Pxmp2 protein_coding processed_transcript MGP_AJ_T0073332.1 MGP_AJ_G0029849.1 mouse_genomes_project 5 108364125 108366732 - Pxmp2 protein_coding retained_intron MGP_AJ_T0074667.1 MGP_AJ_G0030090.1 mouse_genomes_project 5 127483385 127489322 + MGP_AJ_P0074667 Ran protein_coding protein_coding MGP_AJ_T0074668.1 MGP_AJ_G0030090.1 mouse_genomes_project 5 127483518 127484105 + Ran protein_coding processed_transcript MGP_AJ_T0074669.1 MGP_AJ_G0030090.1 mouse_genomes_project 5 127483588 127489322 + MGP_AJ_P0074669 Ran protein_coding protein_coding MGP_AJ_T0014862.1 MGP_AJ_G0012957.1 mouse_genomes_project 5 7545409 7545665 - processed_pseudogene processed_pseudogene MGP_AJ_T0011607.1 MGP_AJ_G0009729.1 mouse_genomes_project 5 110316615 110316976 - Gm27998 misc_RNA misc_RNA MGP_AJ_T0008095.1 MGP_AJ_G0006601.1 mouse_genomes_project 5 30436958 30454324 - Gm20465 lincRNA lincRNA MGP_AJ_T0070702.1 MGP_AJ_G0029347.1 mouse_genomes_project 5 27103127 27116093 - protein_coding retained_intron MGP_AJ_T0070703.1 MGP_AJ_G0029347.1 mouse_genomes_project 5 27103194 27116048 - MGP_AJ_P0070703 protein_coding nonsense_mediated_decay MGP_AJ_T0070704.1 MGP_AJ_G0029347.1 mouse_genomes_project 5 27104043 27116060 - MGP_AJ_P0070704 protein_coding protein_coding MGP_AJ_T0070705.1 MGP_AJ_G0029347.1 mouse_genomes_project 5 27105248 27116031 - MGP_AJ_P0070705 protein_coding nonsense_mediated_decay MGP_AJ_T0070706.1 MGP_AJ_G0029347.1 mouse_genomes_project 5 27105858 27116065 - protein_coding retained_intron MGP_AJ_T0070707.1 MGP_AJ_G0029347.1 mouse_genomes_project 5 27106115 27116055 - MGP_AJ_P0070707 protein_coding protein_coding MGP_AJ_T0070708.1 MGP_AJ_G0029347.1 mouse_genomes_project 5 27110037 27116001 - protein_coding processed_transcript MGP_AJ_T0072368.1 MGP_AJ_G0029620.1 mouse_genomes_project 5 74267176 74272589 + MGP_AJ_P0072368 Arl9 protein_coding protein_coding MGP_AJ_T0072369.1 MGP_AJ_G0029620.1 mouse_genomes_project 5 74269598 74273718 + MGP_AJ_P0072369 Arl9 protein_coding protein_coding MGP_AJ_T0018122.1 MGP_AJ_G0015568.1 mouse_genomes_project 5 27588357 27603794 - Gm9899 processed_transcript lincRNA MGP_AJ_T0018123.1 MGP_AJ_G0015568.1 mouse_genomes_project 5 27591837 27592396 - Gm9899 processed_transcript pseudogene MGP_AJ_T0018124.1 MGP_AJ_G0015568.1 mouse_genomes_project 5 27592319 27594226 - Gm9899 processed_transcript retained_intron MGP_AJ_T0008124.1 MGP_AJ_G0006618.1 mouse_genomes_project 5 40226847 40238550 - Gm43700 lincRNA lincRNA MGP_AJ_T0001693.1 MGP_AJ_G0001608.1 mouse_genomes_project 5 71316587 71317337 + TEC TEC MGP_AJ_T0008441.1 MGP_AJ_G0006844.1 mouse_genomes_project 5 142345332 142349101 - Gm42504 lincRNA lincRNA MGP_AJ_T0001494.1 MGP_AJ_G0001413.1 mouse_genomes_project 5 28654574 28655205 + TEC TEC MGP_AJ_T0015079.1 MGP_AJ_G0013174.1 mouse_genomes_project 5 96691791 96692211 - processed_pseudogene processed_pseudogene MGP_AJ_T0001811.1 MGP_AJ_G0001726.1 mouse_genomes_project 5 121195715 121202234 + TEC TEC MGP_AJ_T0073589.1 MGP_AJ_G0029900.1 mouse_genomes_project 5 112422969 112501169 + MGP_AJ_P0073589 Myo1h protein_coding protein_coding MGP_AJ_T0073590.1 MGP_AJ_G0029900.1 mouse_genomes_project 5 112450397 112500948 + MGP_AJ_P0073590 Myo1h protein_coding protein_coding MGP_AJ_T0073591.1 MGP_AJ_G0029900.1 mouse_genomes_project 5 112450397 112502510 + MGP_AJ_P0073591 Myo1h protein_coding protein_coding MGP_AJ_T0073592.1 MGP_AJ_G0029900.1 mouse_genomes_project 5 112494749 112502510 + Myo1h protein_coding retained_intron MGP_AJ_T0073593.1 MGP_AJ_G0029900.1 mouse_genomes_project 5 112494797 112501254 + Myo1h protein_coding retained_intron MGP_AJ_T0073594.1 MGP_AJ_G0029900.1 mouse_genomes_project 5 112494797 112501254 + MGP_AJ_P0073594 Myo1h protein_coding protein_coding MGP_AJ_T0073595.1 MGP_AJ_G0029900.1 mouse_genomes_project 5 112494797 112501254 + MGP_AJ_P0073595 Myo1h protein_coding protein_coding MGP_AJ_T0073596.1 MGP_AJ_G0029900.1 mouse_genomes_project 5 112494797 112501254 + MGP_AJ_P0073596 Myo1h protein_coding protein_coding MGP_AJ_T0073597.1 MGP_AJ_G0029900.1 mouse_genomes_project 5 112495340 112497670 + Myo1h protein_coding retained_intron MGP_AJ_T0073598.1 MGP_AJ_G0029900.1 mouse_genomes_project 5 112501348 112503291 + Myo1h protein_coding processed_transcript MGP_AJ_T0075676.1 MGP_AJ_G0030284.1 mouse_genomes_project 5 141544726 141547519 + Wipi2 protein_coding retained_intron MGP_AJ_T0075677.1 MGP_AJ_G0030284.1 mouse_genomes_project 5 141546570 141589483 + MGP_AJ_P0075677 Wipi2 protein_coding protein_coding MGP_AJ_T0075678.1 MGP_AJ_G0030284.1 mouse_genomes_project 5 141546619 141581604 + Wipi2 protein_coding retained_intron MGP_AJ_T0075679.1 MGP_AJ_G0030284.1 mouse_genomes_project 5 141546621 141586382 + MGP_AJ_P0075679 Wipi2 protein_coding protein_coding MGP_AJ_T0075680.1 MGP_AJ_G0030284.1 mouse_genomes_project 5 141581408 141583539 + Wipi2 protein_coding retained_intron MGP_AJ_T0015199.1 MGP_AJ_G0013294.1 mouse_genomes_project 5 144573093 144573258 - processed_pseudogene processed_pseudogene MGP_AJ_T0075999.1 MGP_AJ_G0030362.1 mouse_genomes_project 5 146499897 146571771 - MGP_AJ_P0075999 Flt3 protein_coding protein_coding MGP_AJ_T0076000.1 MGP_AJ_G0030362.1 mouse_genomes_project 5 146531142 146571771 - Flt3 protein_coding processed_transcript MGP_AJ_T0071131.1 MGP_AJ_G0029415.1 mouse_genomes_project 5 30781998 30784166 + MGP_AJ_P0071131 Gm9903 protein_coding protein_coding MGP_AJ_T0014999.1 MGP_AJ_G0013094.1 mouse_genomes_project 5 58539222 58540060 - processed_pseudogene processed_pseudogene MGP_AJ_T0004771.1 MGP_AJ_G0004119.1 mouse_genomes_project 5 108861656 108869980 + Gm15559 antisense antisense MGP_AJ_T0014851.1 MGP_AJ_G0012946.1 mouse_genomes_project 5 4218576 4219577 - processed_pseudogene processed_pseudogene MGP_AJ_T0010705.1 MGP_AJ_G0008827.1 mouse_genomes_project 5 113759601 113759662 + Mir7029 miRNA miRNA MGP_AJ_T0075996.1 MGP_AJ_G0030359.1 mouse_genomes_project 5 146438236 146444132 + MGP_AJ_P0075996 Pdx1 protein_coding protein_coding MGP_AJ_T0075595.1 MGP_AJ_G0030265.1 mouse_genomes_project 5 139197627 139213591 + MGP_AJ_P0075595 Nudt1 protein_coding protein_coding MGP_AJ_T0075597.1 MGP_AJ_G0030265.1 mouse_genomes_project 5 139207813 139214096 + MGP_AJ_P0075597 Nudt1 protein_coding protein_coding MGP_AJ_T0075598.1 MGP_AJ_G0030265.1 mouse_genomes_project 5 139207862 139214096 + MGP_AJ_P0075598 Nudt1 protein_coding protein_coding MGP_AJ_T0075599.1 MGP_AJ_G0030265.1 mouse_genomes_project 5 139207907 139213900 + MGP_AJ_P0075599 Nudt1 protein_coding protein_coding MGP_AJ_T0075600.1 MGP_AJ_G0030265.1 mouse_genomes_project 5 139208348 139213767 + MGP_AJ_P0075600 Nudt1 protein_coding protein_coding MGP_AJ_T0075601.1 MGP_AJ_G0030265.1 mouse_genomes_project 5 139208377 139211655 + MGP_AJ_P0075601 Nudt1 protein_coding protein_coding MGP_AJ_T0075602.1 MGP_AJ_G0030265.1 mouse_genomes_project 5 139210532 139211771 + Nudt1 protein_coding processed_transcript MGP_AJ_T0070476.1 MGP_AJ_G0029300.1 mouse_genomes_project 5 20880905 20888503 - Fam126a protein_coding processed_transcript MGP_AJ_T0070477.1 MGP_AJ_G0029300.1 mouse_genomes_project 5 20880906 20997751 - MGP_AJ_P0070477 Fam126a protein_coding protein_coding MGP_AJ_T0070478.1 MGP_AJ_G0029300.1 mouse_genomes_project 5 20926899 20998129 - MGP_AJ_P0070478 Fam126a protein_coding protein_coding MGP_AJ_T0070479.1 MGP_AJ_G0029300.1 mouse_genomes_project 5 20930436 20998087 - MGP_AJ_P0070479 Fam126a protein_coding protein_coding MGP_AJ_T0070480.1 MGP_AJ_G0029300.1 mouse_genomes_project 5 20930438 20966457 - MGP_AJ_P0070480 Fam126a protein_coding protein_coding MGP_AJ_T0070481.1 MGP_AJ_G0029300.1 mouse_genomes_project 5 20947557 20950684 - Fam126a protein_coding retained_intron MGP_AJ_T0070482.1 MGP_AJ_G0029300.1 mouse_genomes_project 5 20954484 20997744 - Fam126a protein_coding processed_transcript MGP_AJ_T0014887.1 MGP_AJ_G0012982.1 mouse_genomes_project 5 18691442 18691725 - processed_pseudogene processed_pseudogene MGP_AJ_T0001560.1 MGP_AJ_G0001478.1 mouse_genomes_project 5 45802029 45804514 - TEC TEC MGP_AJ_T0015145.1 MGP_AJ_G0013240.1 mouse_genomes_project 5 120667580 120668120 + processed_pseudogene processed_pseudogene MGP_AJ_T0018161.1 MGP_AJ_G0015580.1 mouse_genomes_project 5 71289267 71289846 + Usp46os2 processed_transcript retained_intron MGP_AJ_T0018162.1 MGP_AJ_G0015580.1 mouse_genomes_project 5 71289268 71289846 + Usp46os2 processed_transcript processed_transcript MGP_AJ_T0018163.1 MGP_AJ_G0015580.1 mouse_genomes_project 5 71289273 71296993 + Usp46os2 processed_transcript antisense MGP_AJ_T0072663.1 MGP_AJ_G0029702.1 mouse_genomes_project 5 88601984 88610818 + MGP_AJ_P0072663 Areg protein_coding protein_coding MGP_AJ_T0014989.1 MGP_AJ_G0013084.1 mouse_genomes_project 5 56178132 56178826 - processed_pseudogene processed_pseudogene MGP_AJ_T0071780.1 MGP_AJ_G0029521.1 mouse_genomes_project 5 50460379 50461888 + Smim20 protein_coding retained_intron MGP_AJ_T0071781.1 MGP_AJ_G0029521.1 mouse_genomes_project 5 50460434 50471997 + MGP_AJ_P0071781 Smim20 protein_coding nonsense_mediated_decay MGP_AJ_T0071782.1 MGP_AJ_G0029521.1 mouse_genomes_project 5 50460434 50471997 + MGP_AJ_P0071782 Smim20 protein_coding protein_coding MGP_AJ_T0071783.1 MGP_AJ_G0029521.1 mouse_genomes_project 5 50460473 50471997 + MGP_AJ_P0071783 Smim20 protein_coding nonsense_mediated_decay MGP_AJ_T0071784.1 MGP_AJ_G0029521.1 mouse_genomes_project 5 50460486 50462562 + Smim20 protein_coding retained_intron MGP_AJ_T0071785.1 MGP_AJ_G0029521.1 mouse_genomes_project 5 50470574 50471483 + Smim20 protein_coding retained_intron MGP_AJ_T0100000.1 MGP_AJ_G0037966.1 mouse_genomes_project 5 31317259 31317362 + Gm25918 snRNA snRNA MGP_AJ_T0070144.1 MGP_AJ_G0029237.1 mouse_genomes_project 5 2389556 2466462 - MGP_AJ_P0070144 Cfap69 protein_coding protein_coding MGP_AJ_T0070145.1 MGP_AJ_G0029237.1 mouse_genomes_project 5 2389560 2466431 - MGP_AJ_P0070145 Cfap69 protein_coding protein_coding MGP_AJ_T0070146.1 MGP_AJ_G0029237.1 mouse_genomes_project 5 2391260 2427563 - Cfap69 protein_coding processed_transcript MGP_AJ_T0070147.1 MGP_AJ_G0029237.1 mouse_genomes_project 5 2391316 2392780 - MGP_AJ_P0070147 Cfap69 protein_coding protein_coding MGP_AJ_T0070148.1 MGP_AJ_G0029237.1 mouse_genomes_project 5 2391406 2397488 - MGP_AJ_P0070148 Cfap69 protein_coding protein_coding MGP_AJ_T0070149.1 MGP_AJ_G0029237.1 mouse_genomes_project 5 2391449 2422112 - MGP_AJ_P0070149 Cfap69 protein_coding protein_coding MGP_AJ_T0070150.1 MGP_AJ_G0029237.1 mouse_genomes_project 5 2396632 2466266 - MGP_AJ_P0070150 Cfap69 protein_coding nonsense_mediated_decay MGP_AJ_T0070151.1 MGP_AJ_G0029237.1 mouse_genomes_project 5 2399451 2466431 - MGP_AJ_P0070151 Cfap69 protein_coding protein_coding MGP_AJ_T0070152.1 MGP_AJ_G0029237.1 mouse_genomes_project 5 2403926 2466455 - MGP_AJ_P0070152 Cfap69 protein_coding protein_coding MGP_AJ_T0070153.1 MGP_AJ_G0029237.1 mouse_genomes_project 5 2431100 2431474 - Cfap69 protein_coding retained_intron MGP_AJ_T0070154.1 MGP_AJ_G0029237.1 mouse_genomes_project 5 2447450 2466450 - Cfap69 protein_coding retained_intron MGP_AJ_T0070155.1 MGP_AJ_G0029237.1 mouse_genomes_project 5 2450428 2465516 - MGP_AJ_P0070155 Cfap69 protein_coding protein_coding MGP_AJ_T0072456.1 MGP_AJ_G0029636.1 mouse_genomes_project 5 83572840 83601837 - MGP_AJ_P0072456 Tmprss11d protein_coding protein_coding MGP_AJ_T0072457.1 MGP_AJ_G0029636.1 mouse_genomes_project 5 83572840 83645278 - MGP_AJ_P0072457 Tmprss11d protein_coding protein_coding MGP_AJ_T0001637.1 MGP_AJ_G0001553.1 mouse_genomes_project 5 62768630 62770372 + TEC TEC MGP_AJ_T0075472.1 MGP_AJ_G0030241.1 mouse_genomes_project 5 137595438 137652553 + MGP_AJ_P0075472 Fam20c protein_coding protein_coding MGP_AJ_T0075473.1 MGP_AJ_G0030241.1 mouse_genomes_project 5 137596007 137651857 + MGP_AJ_P0075473 Fam20c protein_coding nonsense_mediated_decay MGP_AJ_T0075474.1 MGP_AJ_G0030241.1 mouse_genomes_project 5 137596011 137599774 + Fam20c protein_coding retained_intron MGP_AJ_T0075475.1 MGP_AJ_G0030241.1 mouse_genomes_project 5 137628230 137651635 + Fam20c protein_coding processed_transcript MGP_AJ_T0075476.1 MGP_AJ_G0030241.1 mouse_genomes_project 5 137630504 137649905 + Fam20c protein_coding processed_transcript MGP_AJ_T0075477.1 MGP_AJ_G0030241.1 mouse_genomes_project 5 137649755 137651881 + Fam20c protein_coding retained_intron MGP_AJ_T0008401.1 MGP_AJ_G0006815.1 mouse_genomes_project 5 126895498 126899320 + Gm42495 lincRNA lincRNA MGP_AJ_T0004796.1 MGP_AJ_G0004137.1 mouse_genomes_project 5 115501482 115502231 - Gm10399 antisense antisense MGP_AJ_T0004797.1 MGP_AJ_G0004137.1 mouse_genomes_project 5 115501730 115502229 - Gm10399 antisense antisense MGP_AJ_T0010718.1 MGP_AJ_G0008840.1 mouse_genomes_project 5 133918941 133919022 - Mir7033 miRNA miRNA MGP_AJ_T0008115.1 MGP_AJ_G0006611.1 mouse_genomes_project 5 35164270 35166650 + Gm42505 lincRNA lincRNA MGP_AJ_T0004887.1 MGP_AJ_G0004198.1 mouse_genomes_project 5 146570823 146573199 + Gm26597 antisense antisense MGP_AJ_T0074954.1 MGP_AJ_G0030139.1 mouse_genomes_project 5 133577292 133581263 - MGP_AJ_P0074954 Wbscr22 protein_coding protein_coding MGP_AJ_T0074955.1 MGP_AJ_G0030139.1 mouse_genomes_project 5 133577292 133589000 - MGP_AJ_P0074955 Wbscr22 protein_coding protein_coding MGP_AJ_T0074956.1 MGP_AJ_G0030139.1 mouse_genomes_project 5 133577294 133588412 - MGP_AJ_P0074956 Wbscr22 protein_coding protein_coding MGP_AJ_T0074957.1 MGP_AJ_G0030139.1 mouse_genomes_project 5 133577294 133589293 - MGP_AJ_P0074957 Wbscr22 protein_coding protein_coding MGP_AJ_T0074958.1 MGP_AJ_G0030139.1 mouse_genomes_project 5 133577620 133588373 - MGP_AJ_P0074958 Wbscr22 protein_coding nonsense_mediated_decay MGP_AJ_T0074959.1 MGP_AJ_G0030139.1 mouse_genomes_project 5 133577622 133581063 - Wbscr22 protein_coding retained_intron MGP_AJ_T0074960.1 MGP_AJ_G0030139.1 mouse_genomes_project 5 133577668 133581355 - Wbscr22 protein_coding retained_intron MGP_AJ_T0074961.1 MGP_AJ_G0030139.1 mouse_genomes_project 5 133577948 133581249 - Wbscr22 protein_coding retained_intron MGP_AJ_T0074962.1 MGP_AJ_G0030139.1 mouse_genomes_project 5 133580384 133585803 - Wbscr22 protein_coding processed_transcript MGP_AJ_T0074963.1 MGP_AJ_G0030139.1 mouse_genomes_project 5 133580815 133588382 - Wbscr22 protein_coding retained_intron MGP_AJ_T0074964.1 MGP_AJ_G0030139.1 mouse_genomes_project 5 133581221 133585675 - Wbscr22 protein_coding retained_intron MGP_AJ_T0074965.1 MGP_AJ_G0030139.1 mouse_genomes_project 5 133583530 133588098 - MGP_AJ_P0074965 Wbscr22 protein_coding protein_coding MGP_AJ_T0074966.1 MGP_AJ_G0030139.1 mouse_genomes_project 5 133585594 133588424 - MGP_AJ_P0074966 Wbscr22 protein_coding protein_coding MGP_AJ_T0074967.1 MGP_AJ_G0030139.1 mouse_genomes_project 5 133588070 133588413 - Wbscr22 protein_coding processed_transcript MGP_AJ_T0074968.1 MGP_AJ_G0030139.1 mouse_genomes_project 5 133588490 133588983 - MGP_AJ_P0074968 Wbscr22 protein_coding protein_coding MGP_AJ_T0074357.1 MGP_AJ_G0030038.1 mouse_genomes_project 5 121974349 121975772 + MGP_AJ_P0074357 B3gnt4 protein_coding protein_coding MGP_AJ_T0001496.1 MGP_AJ_G0001415.1 mouse_genomes_project 5 29005503 29006198 + TEC TEC MGP_AJ_T0075719.1 MGP_AJ_G0030291.1 mouse_genomes_project 5 142109445 142117990 - MGP_AJ_P0075719 Rbak protein_coding protein_coding MGP_AJ_T0075720.1 MGP_AJ_G0030291.1 mouse_genomes_project 5 142109445 142118035 - MGP_AJ_P0075720 Rbak protein_coding protein_coding MGP_AJ_T0075721.1 MGP_AJ_G0030291.1 mouse_genomes_project 5 142109446 142113994 - Rbak protein_coding retained_intron MGP_AJ_T0075722.1 MGP_AJ_G0030291.1 mouse_genomes_project 5 142116225 142117992 - Rbak protein_coding retained_intron MGP_AJ_T0004727.1 MGP_AJ_G0004087.1 mouse_genomes_project 5 74659423 74666504 + Gm43261 antisense antisense MGP_AJ_T0100023.1 MGP_AJ_G0037989.1 mouse_genomes_project 5 77406424 77406531 + Gm24304 snRNA snRNA MGP_AJ_T0074395.1 MGP_AJ_G0030043.1 mouse_genomes_project 5 122185458 122206606 - MGP_AJ_P0074395 Rsrc2 protein_coding protein_coding MGP_AJ_T0074396.1 MGP_AJ_G0030043.1 mouse_genomes_project 5 122185760 122200089 - Rsrc2 protein_coding processed_transcript MGP_AJ_T0074397.1 MGP_AJ_G0030043.1 mouse_genomes_project 5 122186043 122206654 - MGP_AJ_P0074397 Rsrc2 protein_coding protein_coding MGP_AJ_T0074398.1 MGP_AJ_G0030043.1 mouse_genomes_project 5 122186054 122206620 - MGP_AJ_P0074398 Rsrc2 protein_coding protein_coding MGP_AJ_T0074399.1 MGP_AJ_G0030043.1 mouse_genomes_project 5 122186120 122200114 - MGP_AJ_P0074399 Rsrc2 protein_coding nonsense_mediated_decay MGP_AJ_T0074400.1 MGP_AJ_G0030043.1 mouse_genomes_project 5 122186120 122200904 - MGP_AJ_P0074400 Rsrc2 protein_coding nonsense_mediated_decay MGP_AJ_T0074401.1 MGP_AJ_G0030043.1 mouse_genomes_project 5 122186120 122200904 - MGP_AJ_P0074401 Rsrc2 protein_coding nonsense_mediated_decay MGP_AJ_T0074402.1 MGP_AJ_G0030043.1 mouse_genomes_project 5 122186283 122190947 - Rsrc2 protein_coding retained_intron MGP_AJ_T0074403.1 MGP_AJ_G0030043.1 mouse_genomes_project 5 122187562 122206626 - MGP_AJ_P0074403 Rsrc2 protein_coding nonsense_mediated_decay MGP_AJ_T0074404.1 MGP_AJ_G0030043.1 mouse_genomes_project 5 122190621 122206652 - MGP_AJ_P0074404 Rsrc2 protein_coding protein_coding MGP_AJ_T0074405.1 MGP_AJ_G0030043.1 mouse_genomes_project 5 122190855 122206621 - MGP_AJ_P0074405 Rsrc2 protein_coding nonsense_mediated_decay MGP_AJ_T0074406.1 MGP_AJ_G0030043.1 mouse_genomes_project 5 122190855 122206622 - MGP_AJ_P0074406 Rsrc2 protein_coding nonsense_mediated_decay MGP_AJ_T0074407.1 MGP_AJ_G0030043.1 mouse_genomes_project 5 122192086 122202826 - Rsrc2 protein_coding retained_intron MGP_AJ_T0074408.1 MGP_AJ_G0030043.1 mouse_genomes_project 5 122192141 122199008 - Rsrc2 protein_coding retained_intron MGP_AJ_T0074409.1 MGP_AJ_G0030043.1 mouse_genomes_project 5 122193870 122206611 - MGP_AJ_P0074409 Rsrc2 protein_coding nonsense_mediated_decay MGP_AJ_T0074410.1 MGP_AJ_G0030043.1 mouse_genomes_project 5 122193917 122206652 - MGP_AJ_P0074410 Rsrc2 protein_coding nonsense_mediated_decay MGP_AJ_T0074411.1 MGP_AJ_G0030043.1 mouse_genomes_project 5 122196925 122206609 - MGP_AJ_P0074411 Rsrc2 protein_coding nonsense_mediated_decay MGP_AJ_T0074412.1 MGP_AJ_G0030043.1 mouse_genomes_project 5 122198083 122206607 - Rsrc2 protein_coding processed_transcript MGP_AJ_T0074413.1 MGP_AJ_G0030043.1 mouse_genomes_project 5 122199205 122206621 - Rsrc2 protein_coding retained_intron MGP_AJ_T0074414.1 MGP_AJ_G0030043.1 mouse_genomes_project 5 122199207 122206621 - Rsrc2 protein_coding retained_intron MGP_AJ_T0074415.1 MGP_AJ_G0030043.1 mouse_genomes_project 5 122200827 122202487 - Rsrc2 protein_coding retained_intron MGP_AJ_T0015023.1 MGP_AJ_G0013118.1 mouse_genomes_project 5 70650422 70651302 - processed_pseudogene processed_pseudogene MGP_AJ_T0008351.1 MGP_AJ_G0006786.1 mouse_genomes_project 5 118032088 118034609 - 1700021F13Rik lincRNA lincRNA MGP_AJ_T0008352.1 MGP_AJ_G0006786.1 mouse_genomes_project 5 118032092 118034407 - 1700021F13Rik lincRNA lincRNA MGP_AJ_T0101293.1 MGP_AJ_G0039259.1 mouse_genomes_project 5 74938192 74938315 - Gm22011 snoRNA snoRNA MGP_AJ_T0072492.1 MGP_AJ_G0029651.1 mouse_genomes_project 5 84778154 84809741 - MGP_AJ_P0072492 Ugt2a2 protein_coding protein_coding MGP_AJ_T0072494.1 MGP_AJ_G0029651.1 mouse_genomes_project 5 84779023 84809743 - MGP_AJ_P0072494 Ugt2a2 protein_coding protein_coding MGP_AJ_T0001865.1 MGP_AJ_G0001779.1 mouse_genomes_project 5 130907995 130910858 - TEC TEC MGP_AJ_T0075034.1 MGP_AJ_G0030155.1 mouse_genomes_project 5 134222211 134286869 + MGP_AJ_P0075034 Por protein_coding protein_coding MGP_AJ_T0075035.1 MGP_AJ_G0030155.1 mouse_genomes_project 5 134226759 134239216 + Por protein_coding processed_transcript MGP_AJ_T0075036.1 MGP_AJ_G0030155.1 mouse_genomes_project 5 134226763 134286325 + MGP_AJ_P0075036 Por protein_coding protein_coding MGP_AJ_T0075037.1 MGP_AJ_G0030155.1 mouse_genomes_project 5 134243308 134290534 + MGP_AJ_P0075037 Por protein_coding protein_coding MGP_AJ_T0075038.1 MGP_AJ_G0030155.1 mouse_genomes_project 5 134243430 134290534 + MGP_AJ_P0075038 Por protein_coding protein_coding MGP_AJ_T0075039.1 MGP_AJ_G0030155.1 mouse_genomes_project 5 134271221 134287086 + Por protein_coding retained_intron MGP_AJ_T0075040.1 MGP_AJ_G0030155.1 mouse_genomes_project 5 134280935 134285449 + MGP_AJ_P0075040 Por protein_coding protein_coding MGP_AJ_T0075041.1 MGP_AJ_G0030155.1 mouse_genomes_project 5 134286757 134289123 + Por protein_coding retained_intron MGP_AJ_T0075042.1 MGP_AJ_G0030155.1 mouse_genomes_project 5 134288388 134289255 + Por protein_coding retained_intron MGP_AJ_T0014952.1 MGP_AJ_G0013047.1 mouse_genomes_project 5 36594652 36595551 - processed_pseudogene processed_pseudogene MGP_AJ_T0014931.1 MGP_AJ_G0013026.1 mouse_genomes_project 5 29559841 29560167 - processed_pseudogene processed_pseudogene MGP_AJ_T0008096.1 MGP_AJ_G0006602.1 mouse_genomes_project 5 30582285 30583125 - Gm43851 lincRNA lincRNA MGP_AJ_T0001514.1 MGP_AJ_G0001432.1 mouse_genomes_project 5 33811899 33814456 + TEC TEC MGP_AJ_T0099989.1 MGP_AJ_G0037955.1 mouse_genomes_project 5 17029666 17029770 + Gm23570 snRNA snRNA MGP_AJ_T0001440.1 MGP_AJ_G0001361.1 mouse_genomes_project 5 5142240 5144304 - TEC TEC MGP_AJ_T0074733.1 MGP_AJ_G0030103.1 mouse_genomes_project 5 128355047 128357796 + MGP_AJ_P0074733 Nupr1l protein_coding nonsense_mediated_decay MGP_AJ_T0074734.1 MGP_AJ_G0030103.1 mouse_genomes_project 5 128355049 128360361 + MGP_AJ_P0074734 Nupr1l protein_coding nonsense_mediated_decay MGP_AJ_T0074735.1 MGP_AJ_G0030103.1 mouse_genomes_project 5 128355075 128356908 + MGP_AJ_P0074735 Nupr1l protein_coding protein_coding MGP_AJ_T0074736.1 MGP_AJ_G0030103.1 mouse_genomes_project 5 128357484 128357796 + Nupr1l protein_coding processed_transcript MGP_AJ_T0008440.1 MGP_AJ_G0006843.1 mouse_genomes_project 5 142279883 142280674 + Gm43397 lincRNA lincRNA MGP_AJ_T0015003.1 MGP_AJ_G0013098.1 mouse_genomes_project 5 60895109 60895569 + processed_pseudogene processed_pseudogene MGP_AJ_T0073401.1 MGP_AJ_G0029860.1 mouse_genomes_project 5 108920128 108930638 - MGP_AJ_P0073401 Hscb protein_coding protein_coding MGP_AJ_T0073402.1 MGP_AJ_G0029860.1 mouse_genomes_project 5 108920138 108930436 - MGP_AJ_P0073402 Hscb protein_coding protein_coding MGP_AJ_T0073403.1 MGP_AJ_G0029860.1 mouse_genomes_project 5 108920138 108927209 - MGP_AJ_P0073403 Hscb protein_coding nonsense_mediated_decay MGP_AJ_T0073404.1 MGP_AJ_G0029860.1 mouse_genomes_project 5 108920139 108925778 - Hscb protein_coding retained_intron MGP_AJ_T0100046.1 MGP_AJ_G0038012.1 mouse_genomes_project 5 111167350 111167459 + Gm22740 snRNA snRNA MGP_AJ_T0101822.1 MGP_AJ_G0039727.1 mouse_genomes_project 5 70631601 70632465 + transcribed_processed_pseudogene processed_transcript MGP_AJ_T0101823.1 MGP_AJ_G0039727.1 mouse_genomes_project 5 70631646 70643333 + transcribed_processed_pseudogene processed_transcript MGP_AJ_T0101824.1 MGP_AJ_G0039727.1 mouse_genomes_project 5 70643156 70643610 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0070992.1 MGP_AJ_G0029392.1 mouse_genomes_project 5 28557566 28560303 + 4930548H24Rik protein_coding retained_intron MGP_AJ_T0070993.1 MGP_AJ_G0029392.1 mouse_genomes_project 5 28557685 28560303 + MGP_AJ_P0070993 4930548H24Rik protein_coding protein_coding MGP_AJ_T0071650.1 MGP_AJ_G0029500.1 mouse_genomes_project 5 42622220 42632603 + MGP_AJ_P0071650 Clrn2 protein_coding protein_coding MGP_AJ_T0098697.1 MGP_AJ_G0036681.1 mouse_genomes_project 5 115386219 115386340 + n-R5s174 rRNA rRNA MGP_AJ_T0075902.1 MGP_AJ_G0030329.1 mouse_genomes_project 5 144124759 144140106 + MGP_AJ_P0075902 Cpsf4 protein_coding protein_coding MGP_AJ_T0075903.1 MGP_AJ_G0030329.1 mouse_genomes_project 5 144124770 144140106 + MGP_AJ_P0075903 Cpsf4 protein_coding protein_coding MGP_AJ_T0075904.1 MGP_AJ_G0030329.1 mouse_genomes_project 5 144124793 144140105 + MGP_AJ_P0075904 Cpsf4 protein_coding protein_coding MGP_AJ_T0075905.1 MGP_AJ_G0030329.1 mouse_genomes_project 5 144124800 144139818 + MGP_AJ_P0075905 Cpsf4 protein_coding protein_coding MGP_AJ_T0075906.1 MGP_AJ_G0030329.1 mouse_genomes_project 5 144124817 144139297 + MGP_AJ_P0075906 Cpsf4 protein_coding nonsense_mediated_decay MGP_AJ_T0075907.1 MGP_AJ_G0030329.1 mouse_genomes_project 5 144125004 144139418 + MGP_AJ_P0075907 Cpsf4 protein_coding protein_coding MGP_AJ_T0075908.1 MGP_AJ_G0030329.1 mouse_genomes_project 5 144128659 144140106 + Cpsf4 protein_coding retained_intron MGP_AJ_T0001888.1 MGP_AJ_G0001801.1 mouse_genomes_project 5 138894770 138897316 - TEC TEC MGP_AJ_T0010670.1 MGP_AJ_G0008792.1 mouse_genomes_project 5 31733349 31733412 + Mir7036b miRNA miRNA MGP_AJ_T0075736.1 MGP_AJ_G0030297.1 mouse_genomes_project 5 142246516 142260482 - E130309D02Rik protein_coding processed_transcript MGP_AJ_T0075737.1 MGP_AJ_G0030297.1 mouse_genomes_project 5 142246528 142260778 - MGP_AJ_P0075737 E130309D02Rik protein_coding protein_coding MGP_AJ_T0075738.1 MGP_AJ_G0030297.1 mouse_genomes_project 5 142246530 142260549 - E130309D02Rik protein_coding retained_intron MGP_AJ_T0075739.1 MGP_AJ_G0030297.1 mouse_genomes_project 5 142253719 142260758 - E130309D02Rik protein_coding processed_transcript MGP_AJ_T0015194.1 MGP_AJ_G0013289.1 mouse_genomes_project 5 143645532 143645703 - processed_pseudogene processed_pseudogene MGP_AJ_T0004663.1 MGP_AJ_G0004035.1 mouse_genomes_project 5 29586910 29656212 - antisense antisense MGP_AJ_T0072989.1 MGP_AJ_G0029767.1 mouse_genomes_project 5 101377050 101504252 + Aff1 protein_coding retained_intron MGP_AJ_T0072990.1 MGP_AJ_G0029767.1 mouse_genomes_project 5 101441286 101543472 + MGP_AJ_P0072990 Aff1 protein_coding protein_coding MGP_AJ_T0072991.1 MGP_AJ_G0029767.1 mouse_genomes_project 5 101441709 101530065 + MGP_AJ_P0072991 Aff1 protein_coding protein_coding MGP_AJ_T0072992.1 MGP_AJ_G0029767.1 mouse_genomes_project 5 101441718 101543472 + MGP_AJ_P0072992 Aff1 protein_coding protein_coding MGP_AJ_T0072993.1 MGP_AJ_G0029767.1 mouse_genomes_project 5 101471530 101499419 + Aff1 protein_coding retained_intron MGP_AJ_T0070567.1 MGP_AJ_G0029317.1 mouse_genomes_project 5 21561366 21569058 + MGP_AJ_P0070567 Chpf2 protein_coding protein_coding MGP_AJ_T0070568.1 MGP_AJ_G0029317.1 mouse_genomes_project 5 21561367 21563835 + Chpf2 protein_coding processed_transcript MGP_AJ_T0070569.1 MGP_AJ_G0029317.1 mouse_genomes_project 5 21561375 21567147 + MGP_AJ_P0070569 Chpf2 protein_coding protein_coding MGP_AJ_T0070570.1 MGP_AJ_G0029317.1 mouse_genomes_project 5 21561397 21562872 + Chpf2 protein_coding processed_transcript MGP_AJ_T0070571.1 MGP_AJ_G0029317.1 mouse_genomes_project 5 21561450 21565882 + MGP_AJ_P0070571 Chpf2 protein_coding protein_coding MGP_AJ_T0070575.1 MGP_AJ_G0029317.1 mouse_genomes_project 5 21568149 21569219 + Chpf2 protein_coding processed_transcript MGP_AJ_T0101311.1 MGP_AJ_G0039277.1 mouse_genomes_project 5 108781778 108781911 - Gm26079 snoRNA snoRNA MGP_AJ_T0014938.1 MGP_AJ_G0013033.1 mouse_genomes_project 5 30836480 30836730 - processed_pseudogene processed_pseudogene MGP_AJ_T0101272.1 MGP_AJ_G0039238.1 mouse_genomes_project 5 15779420 15779548 + Gm23822 snoRNA snoRNA MGP_AJ_T0008156.1 MGP_AJ_G0006647.1 mouse_genomes_project 5 61644493 61684231 + Gm31363 lincRNA lincRNA MGP_AJ_T0099033.1 MGP_AJ_G0037010.1 mouse_genomes_project 5 1621673 1623423 - Gm43113 sense_intronic sense_intronic MGP_AJ_T0099060.1 MGP_AJ_G0037036.1 mouse_genomes_project 5 141806521 141810818 - D430018E03Rik sense_intronic sense_intronic MGP_AJ_T0075480.1 MGP_AJ_G0030243.1 mouse_genomes_project 5 137821754 137841208 - MGP_AJ_P0075480 Pdgfa protein_coding protein_coding MGP_AJ_T0075481.1 MGP_AJ_G0030243.1 mouse_genomes_project 5 137822256 137841124 - MGP_AJ_P0075481 Pdgfa protein_coding protein_coding MGP_AJ_T0075482.1 MGP_AJ_G0030243.1 mouse_genomes_project 5 137822682 137842258 - MGP_AJ_P0075482 Pdgfa protein_coding protein_coding MGP_AJ_T0075483.1 MGP_AJ_G0030243.1 mouse_genomes_project 5 137822711 137843541 - MGP_AJ_P0075483 Pdgfa protein_coding protein_coding MGP_AJ_T0075484.1 MGP_AJ_G0030243.1 mouse_genomes_project 5 137822885 137840452 - Pdgfa protein_coding processed_transcript MGP_AJ_T0075485.1 MGP_AJ_G0030243.1 mouse_genomes_project 5 137832015 137840655 - Pdgfa protein_coding processed_transcript MGP_AJ_T0075486.1 MGP_AJ_G0030243.1 mouse_genomes_project 5 137834186 137842172 - Pdgfa protein_coding processed_transcript MGP_AJ_T0101286.1 MGP_AJ_G0039252.1 mouse_genomes_project 5 59312577 59312709 - Gm22273 snoRNA snoRNA MGP_AJ_T0070709.1 MGP_AJ_G0029348.1 mouse_genomes_project 5 27148290 27150721 - MGP_AJ_P0070709 3110082J24Rik protein_coding protein_coding MGP_AJ_T0070710.1 MGP_AJ_G0029348.1 mouse_genomes_project 5 27148595 27149994 - MGP_AJ_P0070710 3110082J24Rik protein_coding protein_coding MGP_AJ_T0001898.1 MGP_AJ_G0001811.1 mouse_genomes_project 5 142725669 142729092 + TEC TEC MGP_AJ_T0070730.1 MGP_AJ_G0029352.1 mouse_genomes_project 5 27240209 27252841 - MGP_AJ_P0070730 Adgrf3 protein_coding protein_coding MGP_AJ_T0070731.1 MGP_AJ_G0029352.1 mouse_genomes_project 5 27240213 27243201 - MGP_AJ_P0070731 Adgrf3 protein_coding protein_coding MGP_AJ_T0070732.1 MGP_AJ_G0029352.1 mouse_genomes_project 5 27249093 27251706 - Adgrf3 protein_coding processed_transcript MGP_AJ_T0101819.1 MGP_AJ_G0039724.1 mouse_genomes_project 5 55085002 55085576 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0014920.1 MGP_AJ_G0013015.1 mouse_genomes_project 5 24839264 24840246 + processed_pseudogene processed_pseudogene MGP_AJ_T0015036.1 MGP_AJ_G0013131.1 mouse_genomes_project 5 74590782 74591065 + processed_pseudogene processed_pseudogene MGP_AJ_T0071917.1 MGP_AJ_G0029547.1 mouse_genomes_project 5 62648368 62717407 - MGP_AJ_P0071917 Gm43552 protein_coding protein_coding MGP_AJ_T0100027.1 MGP_AJ_G0037993.1 mouse_genomes_project 5 83091057 83091218 + Gm24626 snRNA snRNA MGP_AJ_T0008353.1 MGP_AJ_G0006787.1 mouse_genomes_project 5 118056107 118059581 - Gm43050 lincRNA lincRNA MGP_AJ_T0008354.1 MGP_AJ_G0006787.1 mouse_genomes_project 5 118058690 118059452 - Gm43050 lincRNA lincRNA MGP_AJ_T0071199.1 MGP_AJ_G0029425.1 mouse_genomes_project 5 31158683 31166415 - Poln protein_coding processed_transcript MGP_AJ_T0071200.1 MGP_AJ_G0029425.1 mouse_genomes_project 5 31158693 31203478 - Poln protein_coding processed_transcript MGP_AJ_T0071201.1 MGP_AJ_G0029425.1 mouse_genomes_project 5 31158702 31324389 - MGP_AJ_P0071201 Poln protein_coding protein_coding MGP_AJ_T0071202.1 MGP_AJ_G0029425.1 mouse_genomes_project 5 31158702 31324389 - MGP_AJ_P0071202 Poln protein_coding protein_coding MGP_AJ_T0071203.1 MGP_AJ_G0029425.1 mouse_genomes_project 5 31158787 31324367 - MGP_AJ_P0071203 Poln protein_coding protein_coding MGP_AJ_T0071204.1 MGP_AJ_G0029425.1 mouse_genomes_project 5 31158933 31305539 - MGP_AJ_P0071204 Poln protein_coding unknown_likely_coding MGP_AJ_T0071205.1 MGP_AJ_G0029425.1 mouse_genomes_project 5 31158933 31305539 - MGP_AJ_P0071205 Poln protein_coding unknown_likely_coding MGP_AJ_T0071206.1 MGP_AJ_G0029425.1 mouse_genomes_project 5 31167205 31256916 - Poln protein_coding processed_transcript MGP_AJ_T0071207.1 MGP_AJ_G0029425.1 mouse_genomes_project 5 31185542 31256860 - Poln protein_coding processed_transcript MGP_AJ_T0071208.1 MGP_AJ_G0029425.1 mouse_genomes_project 5 31252852 31256932 - Poln protein_coding retained_intron MGP_AJ_T0015128.1 MGP_AJ_G0013223.1 mouse_genomes_project 5 112239186 112240251 + processed_pseudogene processed_pseudogene MGP_AJ_T0010664.1 MGP_AJ_G0008786.1 mouse_genomes_project 5 21566775 21566873 + Mir671 miRNA miRNA MGP_AJ_T0099045.1 MGP_AJ_G0037022.1 mouse_genomes_project 5 70459767 70462255 - Gm17207 sense_intronic sense_intronic MGP_AJ_T0008229.1 MGP_AJ_G0006705.1 mouse_genomes_project 5 96943964 96949161 + Gm43252 lincRNA lincRNA MGP_AJ_T0071918.1 MGP_AJ_G0029548.1 mouse_genomes_project 5 62667664 62717974 - MGP_AJ_P0071918 Smim14 protein_coding protein_coding MGP_AJ_T0071919.1 MGP_AJ_G0029548.1 mouse_genomes_project 5 62670578 62717634 - MGP_AJ_P0071919 Smim14 protein_coding protein_coding MGP_AJ_T0071920.1 MGP_AJ_G0029548.1 mouse_genomes_project 5 62670579 62717445 - MGP_AJ_P0071920 Smim14 protein_coding nonsense_mediated_decay MGP_AJ_T0071921.1 MGP_AJ_G0029548.1 mouse_genomes_project 5 62670702 62682871 - Smim14 protein_coding retained_intron MGP_AJ_T0071922.1 MGP_AJ_G0029548.1 mouse_genomes_project 5 62674588 62680079 - Smim14 protein_coding retained_intron MGP_AJ_T0071923.1 MGP_AJ_G0029548.1 mouse_genomes_project 5 62682125 62763893 - MGP_AJ_P0071923 Smim14 protein_coding protein_coding MGP_AJ_T0071924.1 MGP_AJ_G0029548.1 mouse_genomes_project 5 62687865 62763838 - Smim14 protein_coding retained_intron MGP_AJ_T0071925.1 MGP_AJ_G0029548.1 mouse_genomes_project 5 62689813 62717455 - Smim14 protein_coding retained_intron MGP_AJ_T0071926.1 MGP_AJ_G0029548.1 mouse_genomes_project 5 62714522 62717974 - Smim14 protein_coding retained_intron MGP_AJ_T0008331.1 MGP_AJ_G0006768.1 mouse_genomes_project 5 114484645 114486860 + Gm13839 lincRNA lincRNA MGP_AJ_T0015060.1 MGP_AJ_G0013155.1 mouse_genomes_project 5 85895529 85896075 + processed_pseudogene processed_pseudogene MGP_AJ_T0004873.1 MGP_AJ_G0004190.1 mouse_genomes_project 5 139079410 139082777 + Gm16120 antisense antisense MGP_AJ_T0004874.1 MGP_AJ_G0004190.1 mouse_genomes_project 5 139081567 139082777 + Gm16120 antisense antisense MGP_AJ_T0100048.1 MGP_AJ_G0038014.1 mouse_genomes_project 5 113663488 113663629 + Gm24265 snRNA snRNA MGP_AJ_T0073196.1 MGP_AJ_G0029815.1 mouse_genomes_project 5 105981340 106011933 + MGP_AJ_P0073196 Ccdc18 protein_coding nonsense_mediated_decay MGP_AJ_T0073197.1 MGP_AJ_G0029815.1 mouse_genomes_project 5 105981379 106088569 + MGP_AJ_P0073197 Ccdc18 protein_coding protein_coding MGP_AJ_T0073198.1 MGP_AJ_G0029815.1 mouse_genomes_project 5 105981411 105987944 + Ccdc18 protein_coding retained_intron MGP_AJ_T0073199.1 MGP_AJ_G0029815.1 mouse_genomes_project 5 106012118 106025115 + Ccdc18 protein_coding processed_transcript MGP_AJ_T0008403.1 MGP_AJ_G0006817.1 mouse_genomes_project 5 126969071 126970568 - 4930573I07Rik lincRNA lincRNA MGP_AJ_T0008404.1 MGP_AJ_G0006817.1 mouse_genomes_project 5 126969073 126970591 - 4930573I07Rik lincRNA lincRNA MGP_AJ_T0008054.1 MGP_AJ_G0006575.1 mouse_genomes_project 5 12852145 12861804 - Gm3510 lincRNA lincRNA MGP_AJ_T0001795.1 MGP_AJ_G0001710.1 mouse_genomes_project 5 118796745 118797730 - TEC TEC MGP_AJ_T0001438.1 MGP_AJ_G0001359.1 mouse_genomes_project 5 4045364 4051332 - TEC TEC MGP_AJ_T0008482.1 MGP_AJ_G0006874.1 mouse_genomes_project 5 149090846 149093509 - Gm43450 lincRNA lincRNA MGP_AJ_T0100063.1 MGP_AJ_G0038029.1 mouse_genomes_project 5 138305953 138306060 + Gm26285 snRNA snRNA MGP_AJ_T0072630.1 MGP_AJ_G0029689.1 mouse_genomes_project 5 87978212 88014532 + MGP_AJ_P0072630 Afm protein_coding protein_coding MGP_AJ_T0072631.1 MGP_AJ_G0029689.1 mouse_genomes_project 5 87978229 88010046 + MGP_AJ_P0072631 Afm protein_coding protein_coding MGP_AJ_T0008138.1 MGP_AJ_G0006630.1 mouse_genomes_project 5 47305466 47310110 + 4930448I18Rik lincRNA lincRNA MGP_AJ_T0014979.1 MGP_AJ_G0013074.1 mouse_genomes_project 5 52763994 52764700 - processed_pseudogene processed_pseudogene MGP_AJ_T0100051.1 MGP_AJ_G0038017.1 mouse_genomes_project 5 116342284 116342391 - Gm26411 snRNA snRNA MGP_AJ_T0070350.1 MGP_AJ_G0029277.1 mouse_genomes_project 5 17834830 17893301 - MGP_AJ_P0070350 Rsbn1l protein_coding protein_coding MGP_AJ_T0070351.1 MGP_AJ_G0029277.1 mouse_genomes_project 5 17837393 17897867 - MGP_AJ_P0070351 Rsbn1l protein_coding protein_coding MGP_AJ_T0070352.1 MGP_AJ_G0029277.1 mouse_genomes_project 5 17861913 17864202 - Rsbn1l protein_coding retained_intron MGP_AJ_T0070353.1 MGP_AJ_G0029277.1 mouse_genomes_project 5 17861944 17887166 - MGP_AJ_P0070353 Rsbn1l protein_coding protein_coding MGP_AJ_T0072449.1 MGP_AJ_G0029633.1 mouse_genomes_project 5 83383107 83446216 - MGP_AJ_P0072449 Uba6 protein_coding protein_coding MGP_AJ_T0072450.1 MGP_AJ_G0029633.1 mouse_genomes_project 5 83391298 83446217 - Uba6 protein_coding retained_intron MGP_AJ_T0070836.1 MGP_AJ_G0029371.1 mouse_genomes_project 5 28060698 28073162 - MGP_AJ_P0070836 Slc5a6 protein_coding protein_coding MGP_AJ_T0070837.1 MGP_AJ_G0029371.1 mouse_genomes_project 5 28060698 28074196 - MGP_AJ_P0070837 Slc5a6 protein_coding protein_coding MGP_AJ_T0070838.1 MGP_AJ_G0029371.1 mouse_genomes_project 5 28060698 28073834 - MGP_AJ_P0070838 Slc5a6 protein_coding protein_coding MGP_AJ_T0070839.1 MGP_AJ_G0029371.1 mouse_genomes_project 5 28060699 28073169 - MGP_AJ_P0070839 Slc5a6 protein_coding protein_coding MGP_AJ_T0070840.1 MGP_AJ_G0029371.1 mouse_genomes_project 5 28061549 28062770 - Slc5a6 protein_coding retained_intron MGP_AJ_T0070841.1 MGP_AJ_G0029371.1 mouse_genomes_project 5 28064127 28067487 - MGP_AJ_P0070841 Slc5a6 protein_coding protein_coding MGP_AJ_T0070842.1 MGP_AJ_G0029371.1 mouse_genomes_project 5 28068095 28073239 - MGP_AJ_P0070842 Slc5a6 protein_coding protein_coding MGP_AJ_T0008463.1 MGP_AJ_G0006863.1 mouse_genomes_project 5 148187186 148192367 - 5930430L01Rik lincRNA lincRNA MGP_AJ_T0008464.1 MGP_AJ_G0006863.1 mouse_genomes_project 5 148188213 148192359 - 5930430L01Rik lincRNA lincRNA MGP_AJ_T0100005.1 MGP_AJ_G0037971.1 mouse_genomes_project 5 37617036 37617216 - Gm23022 snRNA snRNA MGP_AJ_T0001646.1 MGP_AJ_G0001562.1 mouse_genomes_project 5 63148660 63153938 + TEC TEC MGP_AJ_T0008345.1 MGP_AJ_G0006780.1 mouse_genomes_project 5 117317331 117323534 + 1700081H04Rik lincRNA lincRNA MGP_AJ_T0008326.1 MGP_AJ_G0006765.1 mouse_genomes_project 5 113524255 113564039 + Gm13832 lincRNA lincRNA MGP_AJ_T0008327.1 MGP_AJ_G0006765.1 mouse_genomes_project 5 113524274 113591109 + Gm13832 lincRNA lincRNA MGP_AJ_T0071314.1 MGP_AJ_G0029440.1 mouse_genomes_project 5 32124924 32210623 + MGP_AJ_P0071314 Rgs12 protein_coding protein_coding MGP_AJ_T0071315.1 MGP_AJ_G0029440.1 mouse_genomes_project 5 32124927 32197125 + Rgs12 protein_coding retained_intron MGP_AJ_T0071316.1 MGP_AJ_G0029440.1 mouse_genomes_project 5 32141025 32218021 + MGP_AJ_P0071316 Rgs12 protein_coding protein_coding MGP_AJ_T0071317.1 MGP_AJ_G0029440.1 mouse_genomes_project 5 32150066 32151531 + Rgs12 protein_coding processed_transcript MGP_AJ_T0071318.1 MGP_AJ_G0029440.1 mouse_genomes_project 5 32151241 32196536 + Rgs12 protein_coding processed_transcript MGP_AJ_T0071319.1 MGP_AJ_G0029440.1 mouse_genomes_project 5 32166154 32200200 + MGP_AJ_P0071319 Rgs12 protein_coding protein_coding MGP_AJ_T0071320.1 MGP_AJ_G0029440.1 mouse_genomes_project 5 32166575 32218012 + MGP_AJ_P0071320 Rgs12 protein_coding protein_coding MGP_AJ_T0071321.1 MGP_AJ_G0029440.1 mouse_genomes_project 5 32166841 32210481 + MGP_AJ_P0071321 Rgs12 protein_coding protein_coding MGP_AJ_T0071322.1 MGP_AJ_G0029440.1 mouse_genomes_project 5 32176083 32210619 + MGP_AJ_P0071322 Rgs12 protein_coding protein_coding MGP_AJ_T0071323.1 MGP_AJ_G0029440.1 mouse_genomes_project 5 32176210 32218012 + MGP_AJ_P0071323 Rgs12 protein_coding protein_coding MGP_AJ_T0071324.1 MGP_AJ_G0029440.1 mouse_genomes_project 5 32197142 32199690 + Rgs12 protein_coding retained_intron MGP_AJ_T0071326.1 MGP_AJ_G0029440.1 mouse_genomes_project 5 32199858 32201364 + Rgs12 protein_coding retained_intron MGP_AJ_T0071327.1 MGP_AJ_G0029440.1 mouse_genomes_project 5 32201368 32207118 + MGP_AJ_P0071327 Rgs12 protein_coding protein_coding MGP_AJ_T0071328.1 MGP_AJ_G0029440.1 mouse_genomes_project 5 32203930 32209080 + Rgs12 protein_coding processed_transcript MGP_AJ_T0071329.1 MGP_AJ_G0029440.1 mouse_genomes_project 5 32203997 32218013 + MGP_AJ_P0071329 Rgs12 protein_coding protein_coding MGP_AJ_T0070237.1 MGP_AJ_G0029252.1 mouse_genomes_project 5 5806735 5838547 - MGP_AJ_P0070237 Crot protein_coding protein_coding MGP_AJ_T0070238.1 MGP_AJ_G0029252.1 mouse_genomes_project 5 5814132 5823375 - Crot protein_coding processed_transcript MGP_AJ_T0070239.1 MGP_AJ_G0029252.1 mouse_genomes_project 5 5827411 5838265 - Crot protein_coding retained_intron MGP_AJ_T0001844.1 MGP_AJ_G0001758.1 mouse_genomes_project 5 129335142 129338532 - TEC TEC MGP_AJ_T0100008.1 MGP_AJ_G0037974.1 mouse_genomes_project 5 52474398 52474561 - Gm24977 snRNA snRNA MGP_AJ_T0001725.1 MGP_AJ_G0001640.1 mouse_genomes_project 5 94588794 94589279 + TEC TEC MGP_AJ_T0001805.1 MGP_AJ_G0001720.1 mouse_genomes_project 5 120582841 120585179 + TEC TEC MGP_AJ_T0071553.1 MGP_AJ_G0029481.1 mouse_genomes_project 5 35883000 36053871 - MGP_AJ_P0071553 Clnk protein_coding protein_coding MGP_AJ_T0071554.1 MGP_AJ_G0029481.1 mouse_genomes_project 5 35883000 36053871 - MGP_AJ_P0071554 Clnk protein_coding protein_coding MGP_AJ_T0001443.1 MGP_AJ_G0001364.1 mouse_genomes_project 5 5668404 5668705 + TEC TEC MGP_AJ_T0070024.1 MGP_AJ_G0029220.1 mouse_genomes_project 5 7154 10123 + MGP_AJ_P0070024 Cdk6 protein_coding protein_coding MGP_AJ_T0070025.1 MGP_AJ_G0029220.1 mouse_genomes_project 5 9401 10107 + MGP_AJ_P0070025 Cdk6 protein_coding protein_coding MGP_AJ_T0070026.1 MGP_AJ_G0029220.1 mouse_genomes_project 5 9585 59600 + MGP_AJ_P0070026 Cdk6 protein_coding protein_coding MGP_AJ_T0070027.1 MGP_AJ_G0029220.1 mouse_genomes_project 5 9981 218113 + MGP_AJ_P0070027 Cdk6 protein_coding protein_coding MGP_AJ_T0070028.1 MGP_AJ_G0029220.1 mouse_genomes_project 5 165501 167733 + Cdk6 protein_coding retained_intron MGP_AJ_T0008487.1 MGP_AJ_G0006878.1 mouse_genomes_project 5 149831134 149833613 - Gm43598 lincRNA lincRNA MGP_AJ_T0015093.1 MGP_AJ_G0013188.1 mouse_genomes_project 5 102591469 102591862 - processed_pseudogene processed_pseudogene MGP_AJ_T0004761.1 MGP_AJ_G0004109.1 mouse_genomes_project 5 103621594 103625821 - Lrrc8dos antisense antisense MGP_AJ_T0102655.1 MGP_AJ_G0040397.1 mouse_genomes_project 5 144802851 144821490 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0001604.1 MGP_AJ_G0001521.1 mouse_genomes_project 5 54644438 54647094 + TEC TEC MGP_AJ_T0015064.1 MGP_AJ_G0013159.1 mouse_genomes_project 5 87582639 87583086 + processed_pseudogene processed_pseudogene MGP_AJ_T0071838.1 MGP_AJ_G0029532.1 mouse_genomes_project 5 61110958 61172281 - MGP_AJ_P0071838 Rell1 protein_coding protein_coding MGP_AJ_T0071839.1 MGP_AJ_G0029532.1 mouse_genomes_project 5 61111126 61172207 - MGP_AJ_P0071839 Rell1 protein_coding nonsense_mediated_decay MGP_AJ_T0071840.1 MGP_AJ_G0029532.1 mouse_genomes_project 5 61127809 61133970 - Rell1 protein_coding processed_transcript MGP_AJ_T0071841.1 MGP_AJ_G0029532.1 mouse_genomes_project 5 61130064 61133833 - Rell1 protein_coding retained_intron MGP_AJ_T0071842.1 MGP_AJ_G0029532.1 mouse_genomes_project 5 61163727 61172223 - Rell1 protein_coding processed_transcript MGP_AJ_T0072950.1 MGP_AJ_G0029760.1 mouse_genomes_project 5 98543381 98544479 + MGP_AJ_P0072950 Agpat9 protein_coding protein_coding MGP_AJ_T0072951.1 MGP_AJ_G0029760.1 mouse_genomes_project 5 98543798 98597170 + MGP_AJ_P0072951 Agpat9 protein_coding protein_coding MGP_AJ_T0072952.1 MGP_AJ_G0029760.1 mouse_genomes_project 5 98543887 98597170 + MGP_AJ_P0072952 Agpat9 protein_coding protein_coding MGP_AJ_T0072953.1 MGP_AJ_G0029760.1 mouse_genomes_project 5 98544032 98597173 + MGP_AJ_P0072953 Agpat9 protein_coding protein_coding MGP_AJ_T0072954.1 MGP_AJ_G0029760.1 mouse_genomes_project 5 98544085 98544519 + MGP_AJ_P0072954 Agpat9 protein_coding protein_coding MGP_AJ_T0001550.1 MGP_AJ_G0001468.1 mouse_genomes_project 5 42979845 42982003 - TEC TEC MGP_AJ_T0004843.1 MGP_AJ_G0004168.1 mouse_genomes_project 5 128677280 128679897 - Gm42469 antisense antisense MGP_AJ_T0004735.1 MGP_AJ_G0004094.1 mouse_genomes_project 5 88514846 88534830 - Gm42532 antisense antisense MGP_AJ_T0010715.1 MGP_AJ_G0008837.1 mouse_genomes_project 5 132832086 132832155 + Mir3965 miRNA miRNA MGP_AJ_T0074970.1 MGP_AJ_G0030141.1 mouse_genomes_project 5 133597214 133602519 - MGP_AJ_P0074970 Vps37d protein_coding protein_coding MGP_AJ_T0074971.1 MGP_AJ_G0030141.1 mouse_genomes_project 5 133597217 133602519 - MGP_AJ_P0074971 Vps37d protein_coding protein_coding MGP_AJ_T0098846.1 MGP_AJ_G0036830.1 mouse_genomes_project 5 89513339 89513468 - Gm22728 scaRNA scaRNA MGP_AJ_T0001658.1 MGP_AJ_G0001574.1 mouse_genomes_project 5 63839294 63842469 - TEC TEC MGP_AJ_T0071440.1 MGP_AJ_G0029464.1 mouse_genomes_project 5 34211439 34277789 + MGP_AJ_P0071440 Jakmip1 protein_coding protein_coding MGP_AJ_T0071441.1 MGP_AJ_G0029464.1 mouse_genomes_project 5 34212215 34271641 + Jakmip1 protein_coding processed_transcript MGP_AJ_T0071442.1 MGP_AJ_G0029464.1 mouse_genomes_project 5 34212970 34277885 + MGP_AJ_P0071442 Jakmip1 protein_coding protein_coding MGP_AJ_T0071443.1 MGP_AJ_G0029464.1 mouse_genomes_project 5 34212990 34277584 + MGP_AJ_P0071443 Jakmip1 protein_coding protein_coding MGP_AJ_T0071444.1 MGP_AJ_G0029464.1 mouse_genomes_project 5 34230119 34271661 + Jakmip1 protein_coding processed_transcript MGP_AJ_T0071445.1 MGP_AJ_G0029464.1 mouse_genomes_project 5 34230517 34273286 + Jakmip1 protein_coding retained_intron MGP_AJ_T0071446.1 MGP_AJ_G0029464.1 mouse_genomes_project 5 34230558 34296369 + MGP_AJ_P0071446 Jakmip1 protein_coding protein_coding MGP_AJ_T0071447.1 MGP_AJ_G0029464.1 mouse_genomes_project 5 34233943 34317269 + MGP_AJ_P0071447 Jakmip1 protein_coding protein_coding MGP_AJ_T0071448.1 MGP_AJ_G0029464.1 mouse_genomes_project 5 34234002 34273578 + Jakmip1 protein_coding retained_intron MGP_AJ_T0071449.1 MGP_AJ_G0029464.1 mouse_genomes_project 5 34271700 34340528 + MGP_AJ_P0071449 Jakmip1 protein_coding protein_coding MGP_AJ_T0071450.1 MGP_AJ_G0029464.1 mouse_genomes_project 5 34271700 34340528 + MGP_AJ_P0071450 Jakmip1 protein_coding protein_coding MGP_AJ_T0071451.1 MGP_AJ_G0029464.1 mouse_genomes_project 5 34277421 34278371 + Jakmip1 protein_coding retained_intron MGP_AJ_T0071452.1 MGP_AJ_G0029464.1 mouse_genomes_project 5 34314939 34316988 + Jakmip1 protein_coding retained_intron MGP_AJ_T0071453.1 MGP_AJ_G0029464.1 mouse_genomes_project 5 34318195 34343820 + MGP_AJ_P0071453 Jakmip1 protein_coding unknown_likely_coding MGP_AJ_T0001736.1 MGP_AJ_G0001651.1 mouse_genomes_project 5 101029631 101030767 + TEC TEC MGP_AJ_T0001520.1 MGP_AJ_G0001438.1 mouse_genomes_project 5 36801057 36804475 - TEC TEC MGP_AJ_T0074641.1 MGP_AJ_G0030084.1 mouse_genomes_project 5 126076585 126148664 + Glt1d1 protein_coding retained_intron MGP_AJ_T0074642.1 MGP_AJ_G0030084.1 mouse_genomes_project 5 126076585 126166167 + MGP_AJ_P0074642 Glt1d1 protein_coding protein_coding MGP_AJ_T0074643.1 MGP_AJ_G0030084.1 mouse_genomes_project 5 126106061 126146645 + Glt1d1 protein_coding retained_intron MGP_AJ_T0008146.1 MGP_AJ_G0006638.1 mouse_genomes_project 5 50554014 50564810 - Gm42745 lincRNA lincRNA MGP_AJ_T0015084.1 MGP_AJ_G0013179.1 mouse_genomes_project 5 99014261 99014553 + processed_pseudogene processed_pseudogene MGP_AJ_T0074425.1 MGP_AJ_G0030047.1 mouse_genomes_project 5 122376434 122397448 + MGP_AJ_P0074425 Denr protein_coding protein_coding MGP_AJ_T0074426.1 MGP_AJ_G0030047.1 mouse_genomes_project 5 122376528 122377768 + Denr protein_coding processed_transcript MGP_AJ_T0074427.1 MGP_AJ_G0030047.1 mouse_genomes_project 5 122376534 122380497 + Denr protein_coding retained_intron MGP_AJ_T0074428.1 MGP_AJ_G0030047.1 mouse_genomes_project 5 122376541 122377748 + Denr protein_coding retained_intron MGP_AJ_T0074429.1 MGP_AJ_G0030047.1 mouse_genomes_project 5 122376748 122395748 + MGP_AJ_P0074429 Denr protein_coding protein_coding MGP_AJ_T0075934.1 MGP_AJ_G0030338.1 mouse_genomes_project 5 144398181 144472787 - MGP_AJ_P0075934 Cyp3a16 protein_coding protein_coding MGP_AJ_T0001538.1 MGP_AJ_G0001456.1 mouse_genomes_project 5 41690157 41690905 - TEC TEC MGP_AJ_T0004666.1 MGP_AJ_G0004038.1 mouse_genomes_project 5 31328824 31329825 + Gm42846 antisense antisense MGP_AJ_T0014942.1 MGP_AJ_G0013037.1 mouse_genomes_project 5 31247891 31248222 + processed_pseudogene processed_pseudogene MGP_AJ_T0101290.1 MGP_AJ_G0039256.1 mouse_genomes_project 5 63008245 63008439 + Gm24346 snoRNA snoRNA MGP_AJ_T0102657.1 MGP_AJ_G0040399.1 mouse_genomes_project 5 147618619 147618927 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0001893.1 MGP_AJ_G0001806.1 mouse_genomes_project 5 140216962 140219332 - TEC TEC MGP_AJ_T0008261.1 MGP_AJ_G0006726.1 mouse_genomes_project 5 104128347 104130257 + Gm32921 lincRNA lincRNA MGP_AJ_T0075928.1 MGP_AJ_G0030334.1 mouse_genomes_project 5 144238389 144244354 + MGP_AJ_P0075928 protein_coding protein_coding MGP_AJ_T0075929.1 MGP_AJ_G0030334.1 mouse_genomes_project 5 144238413 144249042 + MGP_AJ_P0075929 protein_coding unknown_likely_coding MGP_AJ_T0001786.1 MGP_AJ_G0001701.1 mouse_genomes_project 5 116762286 116764030 - TEC TEC MGP_AJ_T0074048.1 MGP_AJ_G0029992.1 mouse_genomes_project 5 119770428 119794294 - MGP_AJ_P0074048 Erp29 protein_coding nonsense_mediated_decay MGP_AJ_T0074051.1 MGP_AJ_G0029992.1 mouse_genomes_project 5 119782622 119794313 - MGP_AJ_P0074051 Erp29 protein_coding protein_coding MGP_AJ_T0074052.1 MGP_AJ_G0029992.1 mouse_genomes_project 5 119786558 119794303 - MGP_AJ_P0074052 Erp29 protein_coding protein_coding MGP_AJ_T0074053.1 MGP_AJ_G0029992.1 mouse_genomes_project 5 119787043 119794155 - MGP_AJ_P0074053 Erp29 protein_coding nonsense_mediated_decay MGP_AJ_T0100028.1 MGP_AJ_G0037994.1 mouse_genomes_project 5 83352721 83352891 + Gm24524 snRNA snRNA MGP_AJ_T0008055.1 MGP_AJ_G0006576.1 mouse_genomes_project 5 13784743 13786488 + Gm28710 lincRNA lincRNA MGP_AJ_T0072594.1 MGP_AJ_G0029681.1 mouse_genomes_project 5 86878005 86912415 - MGP_AJ_P0072594 Gc protein_coding protein_coding MGP_AJ_T0072595.1 MGP_AJ_G0029681.1 mouse_genomes_project 5 86882392 86889282 - MGP_AJ_P0072595 Gc protein_coding protein_coding MGP_AJ_T0072652.1 MGP_AJ_G0029698.1 mouse_genomes_project 5 88365242 88371217 + MGP_AJ_P0072652 Cxcl2 protein_coding unknown_likely_coding MGP_AJ_T0072653.1 MGP_AJ_G0029698.1 mouse_genomes_project 5 88369137 88371205 + MGP_AJ_P0072653 Cxcl2 protein_coding protein_coding MGP_AJ_T0072654.1 MGP_AJ_G0029698.1 mouse_genomes_project 5 88369139 88371205 + Cxcl2 protein_coding retained_intron MGP_AJ_T0072655.1 MGP_AJ_G0029698.1 mouse_genomes_project 5 88369139 88369628 + Cxcl2 protein_coding retained_intron MGP_AJ_T0099996.1 MGP_AJ_G0037962.1 mouse_genomes_project 5 26496312 26496419 - Gm24538 snRNA snRNA MGP_AJ_T0001880.1 MGP_AJ_G0001793.1 mouse_genomes_project 5 133796914 133797718 + TEC TEC MGP_AJ_T0008346.1 MGP_AJ_G0006781.1 mouse_genomes_project 5 117404620 117410811 - Gm7538 lincRNA lincRNA MGP_AJ_T0074044.1 MGP_AJ_G0029991.1 mouse_genomes_project 5 119739038 119784213 + MGP_AJ_P0074044 Naa25 protein_coding protein_coding MGP_AJ_T0074045.1 MGP_AJ_G0029991.1 mouse_genomes_project 5 119739096 119780619 + MGP_AJ_P0074045 Naa25 protein_coding nonsense_mediated_decay MGP_AJ_T0074046.1 MGP_AJ_G0029991.1 mouse_genomes_project 5 119739097 119768319 + Naa25 protein_coding retained_intron MGP_AJ_T0074047.1 MGP_AJ_G0029991.1 mouse_genomes_project 5 119739107 119781730 + MGP_AJ_P0074047 Naa25 protein_coding nonsense_mediated_decay MGP_AJ_T0074049.1 MGP_AJ_G0029991.1 mouse_genomes_project 5 119781216 119786181 + MGP_AJ_P0074049 Naa25 protein_coding nonsense_mediated_decay MGP_AJ_T0074050.1 MGP_AJ_G0029991.1 mouse_genomes_project 5 119781801 119782315 + Naa25 protein_coding processed_transcript MGP_AJ_T0076024.1 MGP_AJ_G0030364.1 mouse_genomes_project 5 146733376 146901260 - MGP_AJ_P0076024 Flt1 protein_coding protein_coding MGP_AJ_T0076025.1 MGP_AJ_G0030364.1 mouse_genomes_project 5 146776309 146807675 - Flt1 protein_coding processed_transcript MGP_AJ_T0076026.1 MGP_AJ_G0030364.1 mouse_genomes_project 5 146787957 146788444 - Flt1 protein_coding processed_transcript MGP_AJ_T0076027.1 MGP_AJ_G0030364.1 mouse_genomes_project 5 146808415 146901237 - MGP_AJ_P0076027 Flt1 protein_coding protein_coding MGP_AJ_T0076028.1 MGP_AJ_G0030364.1 mouse_genomes_project 5 146818062 146820086 - Flt1 protein_coding retained_intron MGP_AJ_T0076029.1 MGP_AJ_G0030364.1 mouse_genomes_project 5 146827564 146901237 - Flt1 protein_coding processed_transcript MGP_AJ_T0014915.1 MGP_AJ_G0013010.1 mouse_genomes_project 5 23592354 23592466 + processed_pseudogene processed_pseudogene MGP_AJ_T0075820.1 MGP_AJ_G0030313.1 mouse_genomes_project 5 142927153 142934630 - MGP_AJ_P0075820 Ocm protein_coding protein_coding MGP_AJ_T0075821.1 MGP_AJ_G0030313.1 mouse_genomes_project 5 142927425 142933737 - MGP_AJ_P0075821 Ocm protein_coding protein_coding MGP_AJ_T0075822.1 MGP_AJ_G0030313.1 mouse_genomes_project 5 142932470 142934701 - MGP_AJ_P0075822 Ocm protein_coding protein_coding MGP_AJ_T0074557.1 MGP_AJ_G0030068.1 mouse_genomes_project 5 123105761 123114348 + Atp6v0a2 protein_coding processed_transcript MGP_AJ_T0074558.1 MGP_AJ_G0030068.1 mouse_genomes_project 5 123106237 123140285 + MGP_AJ_P0074558 Atp6v0a2 protein_coding protein_coding MGP_AJ_T0074559.1 MGP_AJ_G0030068.1 mouse_genomes_project 5 123106250 123137970 + MGP_AJ_P0074559 Atp6v0a2 protein_coding nonsense_mediated_decay MGP_AJ_T0074560.1 MGP_AJ_G0030068.1 mouse_genomes_project 5 123106354 123118394 + Atp6v0a2 protein_coding retained_intron MGP_AJ_T0074561.1 MGP_AJ_G0030068.1 mouse_genomes_project 5 123129982 123133729 + Atp6v0a2 protein_coding processed_transcript MGP_AJ_T0074562.1 MGP_AJ_G0030068.1 mouse_genomes_project 5 123131547 123139431 + Atp6v0a2 protein_coding retained_intron MGP_AJ_T0074563.1 MGP_AJ_G0030068.1 mouse_genomes_project 5 123134032 123137647 + MGP_AJ_P0074563 Atp6v0a2 protein_coding nonsense_mediated_decay MGP_AJ_T0008425.1 MGP_AJ_G0006829.1 mouse_genomes_project 5 135745755 135753295 + Gm42562 lincRNA lincRNA MGP_AJ_T0073260.1 MGP_AJ_G0029828.1 mouse_genomes_project 5 106561909 106573094 + MGP_AJ_P0073260 Fgfrl1 protein_coding protein_coding MGP_AJ_T0073261.1 MGP_AJ_G0029828.1 mouse_genomes_project 5 106563799 106572897 + MGP_AJ_P0073261 Fgfrl1 protein_coding protein_coding MGP_AJ_T0073262.1 MGP_AJ_G0029828.1 mouse_genomes_project 5 106563837 106576482 + MGP_AJ_P0073262 Fgfrl1 protein_coding protein_coding MGP_AJ_T0073263.1 MGP_AJ_G0029828.1 mouse_genomes_project 5 106564071 106576454 + MGP_AJ_P0073263 Fgfrl1 protein_coding protein_coding MGP_AJ_T0073264.1 MGP_AJ_G0029828.1 mouse_genomes_project 5 106574631 106575430 + Fgfrl1 protein_coding retained_intron MGP_AJ_T0072634.1 MGP_AJ_G0029691.1 mouse_genomes_project 5 88065143 88102775 - MGP_AJ_P0072634 Rassf6 protein_coding protein_coding MGP_AJ_T0072635.1 MGP_AJ_G0029691.1 mouse_genomes_project 5 88065143 88102775 - MGP_AJ_P0072635 Rassf6 protein_coding protein_coding MGP_AJ_T0072636.1 MGP_AJ_G0029691.1 mouse_genomes_project 5 88065690 88071905 - MGP_AJ_P0072636 Rassf6 protein_coding nonsense_mediated_decay MGP_AJ_T0072637.1 MGP_AJ_G0029691.1 mouse_genomes_project 5 88065898 88102945 - MGP_AJ_P0072637 Rassf6 protein_coding protein_coding MGP_AJ_T0072638.1 MGP_AJ_G0029691.1 mouse_genomes_project 5 88079908 88102916 - MGP_AJ_P0072638 Rassf6 protein_coding nonsense_mediated_decay MGP_AJ_T0072639.1 MGP_AJ_G0029691.1 mouse_genomes_project 5 88084445 88102815 - MGP_AJ_P0072639 Rassf6 protein_coding protein_coding MGP_AJ_T0072640.1 MGP_AJ_G0029691.1 mouse_genomes_project 5 88100759 88102943 - Rassf6 protein_coding processed_transcript MGP_AJ_T0076030.1 MGP_AJ_G0030365.1 mouse_genomes_project 5 147042021 147057273 + MGP_AJ_P0076030 Pomp protein_coding protein_coding MGP_AJ_T0076031.1 MGP_AJ_G0030365.1 mouse_genomes_project 5 147042037 147044232 + Pomp protein_coding retained_intron MGP_AJ_T0076032.1 MGP_AJ_G0030365.1 mouse_genomes_project 5 147042053 147054555 + MGP_AJ_P0076032 Pomp protein_coding protein_coding MGP_AJ_T0076033.1 MGP_AJ_G0030365.1 mouse_genomes_project 5 147051876 147057103 + Pomp protein_coding processed_transcript MGP_AJ_T0076034.1 MGP_AJ_G0030365.1 mouse_genomes_project 5 147053925 147057061 + Pomp protein_coding retained_intron MGP_AJ_T0076039.1 MGP_AJ_G0030367.1 mouse_genomes_project 5 147142347 147483566 + MGP_AJ_P0076039 Mtus2 protein_coding protein_coding MGP_AJ_T0076040.1 MGP_AJ_G0030367.1 mouse_genomes_project 5 147142369 147239974 + MGP_AJ_P0076040 Mtus2 protein_coding protein_coding MGP_AJ_T0076041.1 MGP_AJ_G0030367.1 mouse_genomes_project 5 147246311 147399318 + Mtus2 protein_coding retained_intron MGP_AJ_T0076042.1 MGP_AJ_G0030367.1 mouse_genomes_project 5 147262901 147373199 + Mtus2 protein_coding processed_transcript MGP_AJ_T0076043.1 MGP_AJ_G0030367.1 mouse_genomes_project 5 147370272 147483563 + MGP_AJ_P0076043 Mtus2 protein_coding protein_coding MGP_AJ_T0076044.1 MGP_AJ_G0030367.1 mouse_genomes_project 5 147402576 147405757 + Mtus2 protein_coding retained_intron MGP_AJ_T0076045.1 MGP_AJ_G0030367.1 mouse_genomes_project 5 147432800 147481572 + MGP_AJ_P0076045 Mtus2 protein_coding protein_coding MGP_AJ_T0076046.1 MGP_AJ_G0030367.1 mouse_genomes_project 5 147432875 147481053 + MGP_AJ_P0076046 Mtus2 protein_coding nonsense_mediated_decay MGP_AJ_T0076047.1 MGP_AJ_G0030367.1 mouse_genomes_project 5 147432928 147481539 + MGP_AJ_P0076047 Mtus2 protein_coding protein_coding MGP_AJ_T0076048.1 MGP_AJ_G0030367.1 mouse_genomes_project 5 147470584 147480961 + MGP_AJ_P0076048 Mtus2 protein_coding protein_coding MGP_AJ_T0076049.1 MGP_AJ_G0030367.1 mouse_genomes_project 5 147470593 147481501 + MGP_AJ_P0076049 Mtus2 protein_coding protein_coding MGP_AJ_T0001719.1 MGP_AJ_G0001634.1 mouse_genomes_project 5 90642552 90644642 + TEC TEC MGP_AJ_T0102637.1 MGP_AJ_G0040379.1 mouse_genomes_project 5 84435808 84441335 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0071477.1 MGP_AJ_G0029468.1 mouse_genomes_project 5 34639689 34901368 - MGP_AJ_P0071477 Stk32b protein_coding protein_coding MGP_AJ_T0074448.1 MGP_AJ_G0030052.1 mouse_genomes_project 5 122532340 122567655 - MGP_AJ_P0074448 Abcb9 protein_coding protein_coding MGP_AJ_T0074449.1 MGP_AJ_G0030052.1 mouse_genomes_project 5 122533233 122551092 - Abcb9 protein_coding retained_intron MGP_AJ_T0074450.1 MGP_AJ_G0030052.1 mouse_genomes_project 5 122543667 122562140 - MGP_AJ_P0074450 Abcb9 protein_coding nonsense_mediated_decay MGP_AJ_T0074451.1 MGP_AJ_G0030052.1 mouse_genomes_project 5 122543671 122562140 - MGP_AJ_P0074451 Abcb9 protein_coding nonsense_mediated_decay MGP_AJ_T0074452.1 MGP_AJ_G0030052.1 mouse_genomes_project 5 122548078 122551781 - Abcb9 protein_coding processed_transcript MGP_AJ_T0074453.1 MGP_AJ_G0030052.1 mouse_genomes_project 5 122559812 122567643 - Abcb9 protein_coding retained_intron MGP_AJ_T0073405.1 MGP_AJ_G0029861.1 mouse_genomes_project 5 108930839 108932195 + MGP_AJ_P0073405 Chek2 protein_coding protein_coding MGP_AJ_T0073406.1 MGP_AJ_G0029861.1 mouse_genomes_project 5 108930843 108968492 + MGP_AJ_P0073406 Chek2 protein_coding nonsense_mediated_decay MGP_AJ_T0073407.1 MGP_AJ_G0029861.1 mouse_genomes_project 5 108930860 108968504 + MGP_AJ_P0073407 Chek2 protein_coding protein_coding MGP_AJ_T0073408.1 MGP_AJ_G0029861.1 mouse_genomes_project 5 108931089 108932201 + MGP_AJ_P0073408 Chek2 protein_coding protein_coding MGP_AJ_T0073409.1 MGP_AJ_G0029861.1 mouse_genomes_project 5 108932315 108943369 + Chek2 protein_coding retained_intron MGP_AJ_T0075440.1 MGP_AJ_G0030235.1 mouse_genomes_project 5 137002736 137009087 - MGP_AJ_P0075440 Gpc2 protein_coding protein_coding MGP_AJ_T0075441.1 MGP_AJ_G0030235.1 mouse_genomes_project 5 137002738 137009067 - Gpc2 protein_coding retained_intron MGP_AJ_T0075442.1 MGP_AJ_G0030235.1 mouse_genomes_project 5 137002738 137009044 - Gpc2 protein_coding retained_intron MGP_AJ_T0075443.1 MGP_AJ_G0030235.1 mouse_genomes_project 5 137002738 137009064 - MGP_AJ_P0075443 Gpc2 protein_coding nonsense_mediated_decay MGP_AJ_T0075444.1 MGP_AJ_G0030235.1 mouse_genomes_project 5 137002741 137009047 - MGP_AJ_P0075444 Gpc2 protein_coding protein_coding MGP_AJ_T0075445.1 MGP_AJ_G0030235.1 mouse_genomes_project 5 137004609 137007319 - Gpc2 protein_coding retained_intron MGP_AJ_T0075446.1 MGP_AJ_G0030235.1 mouse_genomes_project 5 137005722 137009045 - Gpc2 protein_coding processed_transcript MGP_AJ_T0001896.1 MGP_AJ_G0001809.1 mouse_genomes_project 5 142348891 142351207 - TEC TEC MGP_AJ_T0004673.1 MGP_AJ_G0004045.1 mouse_genomes_project 5 33922267 33924087 + Gm43701 antisense antisense MGP_AJ_T0010709.1 MGP_AJ_G0008831.1 mouse_genomes_project 5 120233136 120233201 - Mir7031 miRNA miRNA MGP_AJ_T0073190.1 MGP_AJ_G0029814.1 mouse_genomes_project 5 105954791 105981031 - MGP_AJ_P0073190 Tmed5 protein_coding protein_coding MGP_AJ_T0073191.1 MGP_AJ_G0029814.1 mouse_genomes_project 5 105966316 105981049 - MGP_AJ_P0073191 Tmed5 protein_coding protein_coding MGP_AJ_T0073192.1 MGP_AJ_G0029814.1 mouse_genomes_project 5 105969963 105981086 - MGP_AJ_P0073192 Tmed5 protein_coding protein_coding MGP_AJ_T0073193.1 MGP_AJ_G0029814.1 mouse_genomes_project 5 105971510 105981015 - MGP_AJ_P0073193 Tmed5 protein_coding protein_coding MGP_AJ_T0073194.1 MGP_AJ_G0029814.1 mouse_genomes_project 5 105977934 105980999 - MGP_AJ_P0073194 Tmed5 protein_coding protein_coding MGP_AJ_T0073195.1 MGP_AJ_G0029814.1 mouse_genomes_project 5 105978189 105980996 - MGP_AJ_P0073195 Tmed5 protein_coding protein_coding MGP_AJ_T0014895.1 MGP_AJ_G0012990.1 mouse_genomes_project 5 19657837 19658210 - processed_pseudogene processed_pseudogene MGP_AJ_T0075623.1 MGP_AJ_G0030273.1 mouse_genomes_project 5 139545485 139587432 - MGP_AJ_P0075623 Iqce protein_coding protein_coding MGP_AJ_T0075624.1 MGP_AJ_G0030273.1 mouse_genomes_project 5 139547163 139549900 - Iqce protein_coding retained_intron MGP_AJ_T0075625.1 MGP_AJ_G0030273.1 mouse_genomes_project 5 139547163 139587319 - Iqce protein_coding retained_intron MGP_AJ_T0075626.1 MGP_AJ_G0030273.1 mouse_genomes_project 5 139548938 139587393 - MGP_AJ_P0075626 Iqce protein_coding protein_coding MGP_AJ_T0075627.1 MGP_AJ_G0030273.1 mouse_genomes_project 5 139549687 139567975 - MGP_AJ_P0075627 Iqce protein_coding protein_coding MGP_AJ_T0075628.1 MGP_AJ_G0030273.1 mouse_genomes_project 5 139549816 139553018 - Iqce protein_coding retained_intron MGP_AJ_T0075629.1 MGP_AJ_G0030273.1 mouse_genomes_project 5 139567514 139575477 - Iqce protein_coding retained_intron MGP_AJ_T0075630.1 MGP_AJ_G0030273.1 mouse_genomes_project 5 139568289 139587330 - Iqce protein_coding retained_intron MGP_AJ_T0075631.1 MGP_AJ_G0030273.1 mouse_genomes_project 5 139575473 139587023 - Iqce protein_coding processed_transcript MGP_AJ_T0075632.1 MGP_AJ_G0030273.1 mouse_genomes_project 5 139575478 139587432 - MGP_AJ_P0075632 Iqce protein_coding protein_coding MGP_AJ_T0075633.1 MGP_AJ_G0030273.1 mouse_genomes_project 5 139578274 139587354 - MGP_AJ_P0075633 Iqce protein_coding protein_coding MGP_AJ_T0075634.1 MGP_AJ_G0030273.1 mouse_genomes_project 5 139578672 139587348 - Iqce protein_coding retained_intron MGP_AJ_T0004630.1 MGP_AJ_G0004008.1 mouse_genomes_project 5 280996 282259 + 2510017J16Rik antisense antisense MGP_AJ_T0004695.1 MGP_AJ_G0004059.1 mouse_genomes_project 5 45175860 45178503 - 4930518C09Rik antisense antisense MGP_AJ_T0100036.1 MGP_AJ_G0038002.1 mouse_genomes_project 5 97606512 97606611 - Gm22838 snRNA snRNA MGP_AJ_T0015062.1 MGP_AJ_G0013157.1 mouse_genomes_project 5 86309441 86310831 - processed_pseudogene processed_pseudogene MGP_AJ_T0001623.1 MGP_AJ_G0001540.1 mouse_genomes_project 5 59821827 59825138 - TEC TEC MGP_AJ_T0015054.1 MGP_AJ_G0013149.1 mouse_genomes_project 5 84938999 84940914 + processed_pseudogene processed_pseudogene MGP_AJ_T0015011.1 MGP_AJ_G0013106.1 mouse_genomes_project 5 64147251 64147762 + processed_pseudogene processed_pseudogene MGP_AJ_T0074942.1 MGP_AJ_G0030137.1 mouse_genomes_project 5 133532678 133533325 + MGP_AJ_P0074942 Abhd11 protein_coding protein_coding MGP_AJ_T0074943.1 MGP_AJ_G0030137.1 mouse_genomes_project 5 133532721 133535436 + MGP_AJ_P0074943 Abhd11 protein_coding protein_coding MGP_AJ_T0074944.1 MGP_AJ_G0030137.1 mouse_genomes_project 5 133532956 133535436 + MGP_AJ_P0074944 Abhd11 protein_coding nonsense_mediated_decay MGP_AJ_T0074945.1 MGP_AJ_G0030137.1 mouse_genomes_project 5 133532971 133535436 + MGP_AJ_P0074945 Abhd11 protein_coding nonsense_mediated_decay MGP_AJ_T0074946.1 MGP_AJ_G0030137.1 mouse_genomes_project 5 133532977 133535285 + MGP_AJ_P0074946 Abhd11 protein_coding protein_coding MGP_AJ_T0074947.1 MGP_AJ_G0030137.1 mouse_genomes_project 5 133533238 133535242 + MGP_AJ_P0074947 Abhd11 protein_coding nonsense_mediated_decay MGP_AJ_T0008205.1 MGP_AJ_G0006684.1 mouse_genomes_project 5 85252404 85257797 + BC037156 lincRNA lincRNA MGP_AJ_T0071294.1 MGP_AJ_G0029436.1 mouse_genomes_project 5 31800071 31822325 - MGP_AJ_P0071294 Nop14 protein_coding protein_coding MGP_AJ_T0071295.1 MGP_AJ_G0029436.1 mouse_genomes_project 5 31802864 31808220 - MGP_AJ_P0071295 Nop14 protein_coding protein_coding MGP_AJ_T0071296.1 MGP_AJ_G0029436.1 mouse_genomes_project 5 31805041 31809475 - Nop14 protein_coding retained_intron MGP_AJ_T0101305.1 MGP_AJ_G0039271.1 mouse_genomes_project 5 97733163 97733246 - Gm26363 snoRNA snoRNA MGP_AJ_T0071238.1 MGP_AJ_G0029431.1 mouse_genomes_project 5 31526903 31645091 + MGP_AJ_P0071238 Fam193a protein_coding protein_coding MGP_AJ_T0071239.1 MGP_AJ_G0029431.1 mouse_genomes_project 5 31568277 31644382 + MGP_AJ_P0071239 Fam193a protein_coding unknown_likely_coding MGP_AJ_T0071240.1 MGP_AJ_G0029431.1 mouse_genomes_project 5 31585002 31644382 + MGP_AJ_P0071240 Fam193a protein_coding protein_coding MGP_AJ_T0071241.1 MGP_AJ_G0029431.1 mouse_genomes_project 5 31589882 31602288 + MGP_AJ_P0071241 Fam193a protein_coding protein_coding MGP_AJ_T0071242.1 MGP_AJ_G0029431.1 mouse_genomes_project 5 31602381 31617146 + MGP_AJ_P0071242 Fam193a protein_coding protein_coding MGP_AJ_T0071243.1 MGP_AJ_G0029431.1 mouse_genomes_project 5 31624178 31636324 + MGP_AJ_P0071243 Fam193a protein_coding protein_coding MGP_AJ_T0074316.1 MGP_AJ_G0030030.1 mouse_genomes_project 5 121575638 121583431 + Setd1b protein_coding retained_intron MGP_AJ_T0074317.1 MGP_AJ_G0030030.1 mouse_genomes_project 5 121575638 121602105 + MGP_AJ_P0074317 Setd1b protein_coding protein_coding MGP_AJ_T0074318.1 MGP_AJ_G0030030.1 mouse_genomes_project 5 121575638 121600909 + MGP_AJ_P0074318 Setd1b protein_coding protein_coding MGP_AJ_T0074319.1 MGP_AJ_G0030030.1 mouse_genomes_project 5 121576370 121600909 + MGP_AJ_P0074319 Setd1b protein_coding protein_coding MGP_AJ_T0074320.1 MGP_AJ_G0030030.1 mouse_genomes_project 5 121596172 121598477 + Setd1b protein_coding retained_intron MGP_AJ_T0074321.1 MGP_AJ_G0030030.1 mouse_genomes_project 5 121596844 121597571 + MGP_AJ_P0074321 Setd1b protein_coding protein_coding MGP_AJ_T0100054.1 MGP_AJ_G0038020.1 mouse_genomes_project 5 121820201 121820370 + Gm23458 snRNA snRNA MGP_AJ_T0015037.1 MGP_AJ_G0013132.1 mouse_genomes_project 5 75181071 75181408 - processed_pseudogene processed_pseudogene MGP_AJ_T0010701.1 MGP_AJ_G0008823.1 mouse_genomes_project 5 111450480 111450533 - Mir7229 miRNA miRNA MGP_AJ_T0004852.1 MGP_AJ_G0004176.1 mouse_genomes_project 5 133511436 133525259 - Wbscr25 antisense antisense MGP_AJ_T0004853.1 MGP_AJ_G0004176.1 mouse_genomes_project 5 133516485 133524416 - Wbscr25 antisense antisense MGP_AJ_T0071431.1 MGP_AJ_G0029461.1 mouse_genomes_project 5 33987922 34011656 - MGP_AJ_P0071431 Man2b2 protein_coding protein_coding MGP_AJ_T0071432.1 MGP_AJ_G0029461.1 mouse_genomes_project 5 33989808 33993966 - MGP_AJ_P0071432 Man2b2 protein_coding protein_coding MGP_AJ_T0071433.1 MGP_AJ_G0029461.1 mouse_genomes_project 5 33989814 33998687 - MGP_AJ_P0071433 Man2b2 protein_coding protein_coding MGP_AJ_T0010675.1 MGP_AJ_G0008797.1 mouse_genomes_project 5 45402100 45402210 + Mir218-1 miRNA miRNA MGP_AJ_T0001524.1 MGP_AJ_G0001442.1 mouse_genomes_project 5 40441691 40442903 + TEC TEC MGP_AJ_T0072463.1 MGP_AJ_G0029639.1 mouse_genomes_project 5 83792721 83897491 - MGP_AJ_P0072463 Tmprss11f protein_coding protein_coding MGP_AJ_T0072464.1 MGP_AJ_G0029639.1 mouse_genomes_project 5 83829615 83897491 - Tmprss11f protein_coding processed_transcript MGP_AJ_T0072465.1 MGP_AJ_G0029639.1 mouse_genomes_project 5 83870233 83897450 - Tmprss11f protein_coding retained_intron MGP_AJ_T0073748.1 MGP_AJ_G0029932.1 mouse_genomes_project 5 113506730 113509069 + MGP_AJ_P0073748 Triap1 protein_coding protein_coding MGP_AJ_T0014866.1 MGP_AJ_G0012961.1 mouse_genomes_project 5 10728830 10729861 + processed_pseudogene processed_pseudogene MGP_AJ_T0071337.1 MGP_AJ_G0029442.1 mouse_genomes_project 5 32235144 32260254 + MGP_AJ_P0071337 Dok7 protein_coding protein_coding MGP_AJ_T0071338.1 MGP_AJ_G0029442.1 mouse_genomes_project 5 32235240 32260254 + MGP_AJ_P0071338 Dok7 protein_coding protein_coding MGP_AJ_T0071339.1 MGP_AJ_G0029442.1 mouse_genomes_project 5 32235266 32244850 + MGP_AJ_P0071339 Dok7 protein_coding protein_coding MGP_AJ_T0071340.1 MGP_AJ_G0029442.1 mouse_genomes_project 5 32235455 32267129 + MGP_AJ_P0071340 Dok7 protein_coding protein_coding MGP_AJ_T0071341.1 MGP_AJ_G0029442.1 mouse_genomes_project 5 32254247 32260254 + Dok7 protein_coding retained_intron MGP_AJ_T0071408.1 MGP_AJ_G0029458.1 mouse_genomes_project 5 33685037 33721769 - MGP_AJ_P0071408 Tbc1d14 protein_coding nonsense_mediated_decay MGP_AJ_T0071409.1 MGP_AJ_G0029458.1 mouse_genomes_project 5 33685037 33763662 - MGP_AJ_P0071409 Tbc1d14 protein_coding protein_coding MGP_AJ_T0071410.1 MGP_AJ_G0029458.1 mouse_genomes_project 5 33685037 33778364 - MGP_AJ_P0071410 Tbc1d14 protein_coding protein_coding MGP_AJ_T0071411.1 MGP_AJ_G0029458.1 mouse_genomes_project 5 33685037 33778372 - MGP_AJ_P0071411 Tbc1d14 protein_coding protein_coding MGP_AJ_T0071412.1 MGP_AJ_G0029458.1 mouse_genomes_project 5 33687137 33711694 - Tbc1d14 protein_coding retained_intron MGP_AJ_T0071413.1 MGP_AJ_G0029458.1 mouse_genomes_project 5 33710504 33721740 - MGP_AJ_P0071413 Tbc1d14 protein_coding nonsense_mediated_decay MGP_AJ_T0071414.1 MGP_AJ_G0029458.1 mouse_genomes_project 5 33716148 33721728 - Tbc1d14 protein_coding processed_transcript MGP_AJ_T0071415.1 MGP_AJ_G0029458.1 mouse_genomes_project 5 33732515 33774509 - Tbc1d14 protein_coding retained_intron MGP_AJ_T0071416.1 MGP_AJ_G0029458.1 mouse_genomes_project 5 33734408 33754843 - Tbc1d14 protein_coding processed_transcript MGP_AJ_T0071417.1 MGP_AJ_G0029458.1 mouse_genomes_project 5 33734470 33765612 - MGP_AJ_P0071417 Tbc1d14 protein_coding protein_coding MGP_AJ_T0071418.1 MGP_AJ_G0029458.1 mouse_genomes_project 5 33761953 33778331 - Tbc1d14 protein_coding retained_intron MGP_AJ_T0071419.1 MGP_AJ_G0029458.1 mouse_genomes_project 5 33763661 33778331 - MGP_AJ_P0071419 Tbc1d14 protein_coding protein_coding MGP_AJ_T0071420.1 MGP_AJ_G0029458.1 mouse_genomes_project 5 33763710 33765383 - MGP_AJ_P0071420 Tbc1d14 protein_coding protein_coding MGP_AJ_T0071421.1 MGP_AJ_G0029458.1 mouse_genomes_project 5 33763905 33785356 - MGP_AJ_P0071421 Tbc1d14 protein_coding protein_coding MGP_AJ_T0071422.1 MGP_AJ_G0029458.1 mouse_genomes_project 5 33764133 33785381 - MGP_AJ_P0071422 Tbc1d14 protein_coding protein_coding MGP_AJ_T0014936.1 MGP_AJ_G0013031.1 mouse_genomes_project 5 30272662 30273122 + processed_pseudogene processed_pseudogene MGP_AJ_T0074275.1 MGP_AJ_G0030024.1 mouse_genomes_project 5 121269953 121291668 + MGP_AJ_P0074275 Rnf34 protein_coding protein_coding MGP_AJ_T0074276.1 MGP_AJ_G0030024.1 mouse_genomes_project 5 121270062 121284019 + MGP_AJ_P0074276 Rnf34 protein_coding protein_coding MGP_AJ_T0070271.1 MGP_AJ_G0029257.1 mouse_genomes_project 5 9231536 9436877 + MGP_AJ_P0070271 Sema3d protein_coding protein_coding MGP_AJ_T0070272.1 MGP_AJ_G0029257.1 mouse_genomes_project 5 9231657 9407056 + Sema3d protein_coding processed_transcript MGP_AJ_T0070273.1 MGP_AJ_G0029257.1 mouse_genomes_project 5 9231657 9426755 + MGP_AJ_P0070273 Sema3d protein_coding protein_coding MGP_AJ_T0070274.1 MGP_AJ_G0029257.1 mouse_genomes_project 5 9334859 9358806 + Sema3d protein_coding processed_transcript MGP_AJ_T0070275.1 MGP_AJ_G0029257.1 mouse_genomes_project 5 9423728 9436681 + Sema3d protein_coding processed_transcript MGP_AJ_T0071601.1 MGP_AJ_G0029493.1 mouse_genomes_project 5 41077725 41078175 + MGP_AJ_P0071601 protein_coding protein_coding MGP_AJ_T0099059.1 MGP_AJ_G0037035.1 mouse_genomes_project 5 135429880 135437260 - Gm20485 sense_intronic sense_intronic MGP_AJ_T0075425.1 MGP_AJ_G0030231.1 mouse_genomes_project 5 136984534 136988441 + MGP_AJ_P0075425 Lamtor4 protein_coding protein_coding MGP_AJ_T0075426.1 MGP_AJ_G0030231.1 mouse_genomes_project 5 136984883 136988444 + Lamtor4 protein_coding processed_transcript MGP_AJ_T0101297.1 MGP_AJ_G0039263.1 mouse_genomes_project 5 85070914 85071037 + Gm25066 snoRNA snoRNA MGP_AJ_T0001694.1 MGP_AJ_G0001609.1 mouse_genomes_project 5 71348479 71349493 - TEC TEC MGP_AJ_T0071140.1 MGP_AJ_G0029417.1 mouse_genomes_project 5 30806154 30810761 - MGP_AJ_P0071140 Tmem129 protein_coding protein_coding MGP_AJ_T0071141.1 MGP_AJ_G0029417.1 mouse_genomes_project 5 30806161 30810833 - Tmem129 protein_coding retained_intron MGP_AJ_T0071142.1 MGP_AJ_G0029417.1 mouse_genomes_project 5 30808491 30810790 - Tmem129 protein_coding retained_intron MGP_AJ_T0071001.1 MGP_AJ_G0029394.1 mouse_genomes_project 5 28587891 28600090 - MGP_AJ_P0071001 Supt7l protein_coding protein_coding MGP_AJ_T0071002.1 MGP_AJ_G0029394.1 mouse_genomes_project 5 28589818 28600046 - MGP_AJ_P0071002 Supt7l protein_coding protein_coding MGP_AJ_T0071003.1 MGP_AJ_G0029394.1 mouse_genomes_project 5 28594866 28601122 - Supt7l protein_coding retained_intron MGP_AJ_T0071004.1 MGP_AJ_G0029394.1 mouse_genomes_project 5 28598771 28600017 - Supt7l protein_coding retained_intron MGP_AJ_T0015196.1 MGP_AJ_G0013291.1 mouse_genomes_project 5 144225256 144225755 - processed_pseudogene processed_pseudogene MGP_AJ_T0001656.1 MGP_AJ_G0001572.1 mouse_genomes_project 5 63769402 63771341 - TEC TEC MGP_AJ_T0008456.1 MGP_AJ_G0006857.1 mouse_genomes_project 5 147931228 147932528 + 2210417A02Rik lincRNA lincRNA MGP_AJ_T0073496.1 MGP_AJ_G0029882.1 mouse_genomes_project 5 111367995 111436879 - MGP_AJ_P0073496 Sgsm1 protein_coding protein_coding MGP_AJ_T0073497.1 MGP_AJ_G0029882.1 mouse_genomes_project 5 111368004 111406789 - MGP_AJ_P0073497 Sgsm1 protein_coding protein_coding MGP_AJ_T0073498.1 MGP_AJ_G0029882.1 mouse_genomes_project 5 111382210 111406789 - Sgsm1 protein_coding processed_transcript MGP_AJ_T0073499.1 MGP_AJ_G0029882.1 mouse_genomes_project 5 111382852 111436870 - Sgsm1 protein_coding processed_transcript MGP_AJ_T0073500.1 MGP_AJ_G0029882.1 mouse_genomes_project 5 111390786 111436832 - MGP_AJ_P0073500 Sgsm1 protein_coding protein_coding MGP_AJ_T0073501.1 MGP_AJ_G0029882.1 mouse_genomes_project 5 111391399 111436790 - MGP_AJ_P0073501 Sgsm1 protein_coding protein_coding MGP_AJ_T0073502.1 MGP_AJ_G0029882.1 mouse_genomes_project 5 111400158 111406775 - MGP_AJ_P0073502 Sgsm1 protein_coding protein_coding MGP_AJ_T0073503.1 MGP_AJ_G0029882.1 mouse_genomes_project 5 111402087 111405525 - Sgsm1 protein_coding retained_intron MGP_AJ_T0073504.1 MGP_AJ_G0029882.1 mouse_genomes_project 5 111405795 111409084 - Sgsm1 protein_coding retained_intron MGP_AJ_T0073505.1 MGP_AJ_G0029882.1 mouse_genomes_project 5 111411619 111436813 - Sgsm1 protein_coding retained_intron MGP_AJ_T0101294.1 MGP_AJ_G0039260.1 mouse_genomes_project 5 76045748 76045884 + Gm25756 snoRNA snoRNA MGP_AJ_T0008341.1 MGP_AJ_G0006776.1 mouse_genomes_project 5 116595225 116595748 - Gm28563 lincRNA lincRNA MGP_AJ_T0075658.1 MGP_AJ_G0030280.1 mouse_genomes_project 5 141378494 141381105 + MGP_AJ_P0075658 Ap5z1 protein_coding protein_coding MGP_AJ_T0075659.1 MGP_AJ_G0030280.1 mouse_genomes_project 5 141378549 141387987 + Ap5z1 protein_coding processed_transcript MGP_AJ_T0075660.1 MGP_AJ_G0030280.1 mouse_genomes_project 5 141378594 141384515 + MGP_AJ_P0075660 Ap5z1 protein_coding nonsense_mediated_decay MGP_AJ_T0075661.1 MGP_AJ_G0030280.1 mouse_genomes_project 5 141378604 141394489 + MGP_AJ_P0075661 Ap5z1 protein_coding protein_coding MGP_AJ_T0075662.1 MGP_AJ_G0030280.1 mouse_genomes_project 5 141378611 141393581 + Ap5z1 protein_coding retained_intron MGP_AJ_T0075663.1 MGP_AJ_G0030280.1 mouse_genomes_project 5 141378624 141393833 + MGP_AJ_P0075663 Ap5z1 protein_coding protein_coding MGP_AJ_T0075664.1 MGP_AJ_G0030280.1 mouse_genomes_project 5 141389877 141391532 + Ap5z1 protein_coding retained_intron MGP_AJ_T0008480.1 MGP_AJ_G0006872.1 mouse_genomes_project 5 148853996 148863533 + Gm43153 lincRNA lincRNA MGP_AJ_T0001853.1 MGP_AJ_G0001767.1 mouse_genomes_project 5 130173036 130174169 - TEC TEC MGP_AJ_T0072994.1 MGP_AJ_G0029768.1 mouse_genomes_project 5 101550621 101574931 - MGP_AJ_P0072994 Klhl8 protein_coding protein_coding MGP_AJ_T0072995.1 MGP_AJ_G0029768.1 mouse_genomes_project 5 101550621 101574931 - MGP_AJ_P0072995 Klhl8 protein_coding protein_coding MGP_AJ_T0072996.1 MGP_AJ_G0029768.1 mouse_genomes_project 5 101550721 101599101 - MGP_AJ_P0072996 Klhl8 protein_coding unknown_likely_coding MGP_AJ_T0072997.1 MGP_AJ_G0029768.1 mouse_genomes_project 5 101550728 101574931 - MGP_AJ_P0072997 Klhl8 protein_coding nonsense_mediated_decay MGP_AJ_T0072998.1 MGP_AJ_G0029768.1 mouse_genomes_project 5 101558958 101563018 - Klhl8 protein_coding retained_intron MGP_AJ_T0071820.1 MGP_AJ_G0029527.1 mouse_genomes_project 5 58979474 58981815 + MGP_AJ_P0071820 G6pd2 protein_coding protein_coding MGP_AJ_T0001444.1 MGP_AJ_G0001365.1 mouse_genomes_project 5 5838381 5838612 + TEC TEC MGP_AJ_T0074864.1 MGP_AJ_G0030124.1 mouse_genomes_project 5 132864310 132968392 - MGP_AJ_P0074864 Gtf2ird1 protein_coding protein_coding MGP_AJ_T0074865.1 MGP_AJ_G0030124.1 mouse_genomes_project 5 132864310 132967932 - MGP_AJ_P0074865 Gtf2ird1 protein_coding protein_coding MGP_AJ_T0074866.1 MGP_AJ_G0030124.1 mouse_genomes_project 5 132864315 132968364 - MGP_AJ_P0074866 Gtf2ird1 protein_coding protein_coding MGP_AJ_T0074867.1 MGP_AJ_G0030124.1 mouse_genomes_project 5 132864323 132968392 - MGP_AJ_P0074867 Gtf2ird1 protein_coding protein_coding MGP_AJ_T0074868.1 MGP_AJ_G0030124.1 mouse_genomes_project 5 132864333 132968252 - MGP_AJ_P0074868 Gtf2ird1 protein_coding protein_coding MGP_AJ_T0074869.1 MGP_AJ_G0030124.1 mouse_genomes_project 5 132864333 132968252 - MGP_AJ_P0074869 Gtf2ird1 protein_coding protein_coding MGP_AJ_T0074870.1 MGP_AJ_G0030124.1 mouse_genomes_project 5 132864333 132968260 - MGP_AJ_P0074870 Gtf2ird1 protein_coding protein_coding MGP_AJ_T0074871.1 MGP_AJ_G0030124.1 mouse_genomes_project 5 132864351 132968265 - MGP_AJ_P0074871 Gtf2ird1 protein_coding protein_coding MGP_AJ_T0074872.1 MGP_AJ_G0030124.1 mouse_genomes_project 5 132865227 132968265 - MGP_AJ_P0074872 Gtf2ird1 protein_coding protein_coding MGP_AJ_T0074873.1 MGP_AJ_G0030124.1 mouse_genomes_project 5 132865227 132968252 - MGP_AJ_P0074873 Gtf2ird1 protein_coding protein_coding MGP_AJ_T0074874.1 MGP_AJ_G0030124.1 mouse_genomes_project 5 132865288 132968368 - MGP_AJ_P0074874 Gtf2ird1 protein_coding protein_coding MGP_AJ_T0074875.1 MGP_AJ_G0030124.1 mouse_genomes_project 5 132865305 132968262 - MGP_AJ_P0074875 Gtf2ird1 protein_coding protein_coding MGP_AJ_T0074876.1 MGP_AJ_G0030124.1 mouse_genomes_project 5 132866838 132870847 - Gtf2ird1 protein_coding retained_intron MGP_AJ_T0074877.1 MGP_AJ_G0030124.1 mouse_genomes_project 5 132869998 132899719 - MGP_AJ_P0074877 Gtf2ird1 protein_coding protein_coding MGP_AJ_T0074878.1 MGP_AJ_G0030124.1 mouse_genomes_project 5 132870050 132899740 - MGP_AJ_P0074878 Gtf2ird1 protein_coding nonsense_mediated_decay MGP_AJ_T0074879.1 MGP_AJ_G0030124.1 mouse_genomes_project 5 132870644 132929424 - MGP_AJ_P0074879 Gtf2ird1 protein_coding unknown_likely_coding MGP_AJ_T0074880.1 MGP_AJ_G0030124.1 mouse_genomes_project 5 132885073 132967953 - Gtf2ird1 protein_coding retained_intron MGP_AJ_T0074881.1 MGP_AJ_G0030124.1 mouse_genomes_project 5 132892743 132907740 - MGP_AJ_P0074881 Gtf2ird1 protein_coding nonsense_mediated_decay MGP_AJ_T0074882.1 MGP_AJ_G0030124.1 mouse_genomes_project 5 132892743 132907740 - MGP_AJ_P0074882 Gtf2ird1 protein_coding protein_coding MGP_AJ_T0074883.1 MGP_AJ_G0030124.1 mouse_genomes_project 5 132892952 132895775 - Gtf2ird1 protein_coding retained_intron MGP_AJ_T0074884.1 MGP_AJ_G0030124.1 mouse_genomes_project 5 132892955 132907740 - MGP_AJ_P0074884 Gtf2ird1 protein_coding nonsense_mediated_decay MGP_AJ_T0074885.1 MGP_AJ_G0030124.1 mouse_genomes_project 5 132895051 132907740 - MGP_AJ_P0074885 Gtf2ird1 protein_coding protein_coding MGP_AJ_T0074886.1 MGP_AJ_G0030124.1 mouse_genomes_project 5 132896040 132907644 - Gtf2ird1 protein_coding retained_intron MGP_AJ_T0074887.1 MGP_AJ_G0030124.1 mouse_genomes_project 5 132896156 132914177 - Gtf2ird1 protein_coding retained_intron MGP_AJ_T0074888.1 MGP_AJ_G0030124.1 mouse_genomes_project 5 132902182 132927507 - MGP_AJ_P0074888 Gtf2ird1 protein_coding protein_coding MGP_AJ_T0074889.1 MGP_AJ_G0030124.1 mouse_genomes_project 5 132914891 132968355 - Gtf2ird1 protein_coding retained_intron MGP_AJ_T0074890.1 MGP_AJ_G0030124.1 mouse_genomes_project 5 132916764 132968350 - Gtf2ird1 protein_coding processed_transcript MGP_AJ_T0074891.1 MGP_AJ_G0030124.1 mouse_genomes_project 5 132923023 132967627 - MGP_AJ_P0074891 Gtf2ird1 protein_coding protein_coding MGP_AJ_T0008336.1 MGP_AJ_G0006773.1 mouse_genomes_project 5 114999626 115002462 + Gm29926 lincRNA lincRNA MGP_AJ_T0070689.1 MGP_AJ_G0029345.1 mouse_genomes_project 5 26758534 26811277 + MGP_AJ_P0070689 Dnajb6 protein_coding protein_coding MGP_AJ_T0070690.1 MGP_AJ_G0029345.1 mouse_genomes_project 5 26758786 26791528 + MGP_AJ_P0070690 Dnajb6 protein_coding protein_coding MGP_AJ_T0070691.1 MGP_AJ_G0029345.1 mouse_genomes_project 5 26758841 26781879 + MGP_AJ_P0070691 Dnajb6 protein_coding protein_coding MGP_AJ_T0070692.1 MGP_AJ_G0029345.1 mouse_genomes_project 5 26758870 26762047 + Dnajb6 protein_coding processed_transcript MGP_AJ_T0070693.1 MGP_AJ_G0029345.1 mouse_genomes_project 5 26758879 26845601 + MGP_AJ_P0070693 Dnajb6 protein_coding protein_coding MGP_AJ_T0070694.1 MGP_AJ_G0029345.1 mouse_genomes_project 5 26760223 26771994 + MGP_AJ_P0070694 Dnajb6 protein_coding protein_coding MGP_AJ_T0070695.1 MGP_AJ_G0029345.1 mouse_genomes_project 5 26774292 26776427 + Dnajb6 protein_coding retained_intron MGP_AJ_T0070696.1 MGP_AJ_G0029345.1 mouse_genomes_project 5 26778137 26781870 + Dnajb6 protein_coding processed_transcript MGP_AJ_T0070697.1 MGP_AJ_G0029345.1 mouse_genomes_project 5 26788136 26789699 + Dnajb6 protein_coding retained_intron MGP_AJ_T0070698.1 MGP_AJ_G0029345.1 mouse_genomes_project 5 26788430 26806181 + MGP_AJ_P0070698 Dnajb6 protein_coding protein_coding MGP_AJ_T0070699.1 MGP_AJ_G0029345.1 mouse_genomes_project 5 26789261 26790924 + Dnajb6 protein_coding retained_intron MGP_AJ_T0075478.1 MGP_AJ_G0030242.1 mouse_genomes_project 5 137661767 137663774 + Gm5294 protein_coding unprocessed_pseudogene MGP_AJ_T0075479.1 MGP_AJ_G0030242.1 mouse_genomes_project 5 137662477 137664017 + MGP_AJ_P0075479 Gm5294 protein_coding protein_coding MGP_AJ_T0101295.1 MGP_AJ_G0039261.1 mouse_genomes_project 5 80923269 80923401 - Gm25765 snoRNA snoRNA MGP_AJ_T0014978.1 MGP_AJ_G0013073.1 mouse_genomes_project 5 52188528 52189357 + processed_pseudogene processed_pseudogene MGP_AJ_T0071069.1 MGP_AJ_G0029403.1 mouse_genomes_project 5 29877322 29883537 - MGP_AJ_P0071069 protein_coding protein_coding MGP_AJ_T0014921.1 MGP_AJ_G0013016.1 mouse_genomes_project 5 25016842 25018138 - processed_pseudogene processed_pseudogene MGP_AJ_T0008134.1 MGP_AJ_G0006627.1 mouse_genomes_project 5 42182309 42590416 - lincRNA lincRNA MGP_AJ_T0008135.1 MGP_AJ_G0006627.1 mouse_genomes_project 5 42288123 42355686 - lincRNA lincRNA MGP_AJ_T0001479.1 MGP_AJ_G0001399.1 mouse_genomes_project 5 22342528 22346535 + TEC TEC MGP_AJ_T0004892.1 MGP_AJ_G0004203.1 mouse_genomes_project 5 148693797 148742743 - Gm15997 antisense antisense MGP_AJ_T0014969.1 MGP_AJ_G0013064.1 mouse_genomes_project 5 46719509 46720546 + processed_pseudogene processed_pseudogene MGP_AJ_T0073361.1 MGP_AJ_G0029855.1 mouse_genomes_project 5 108738193 108743210 - MGP_AJ_P0073361 Noc4l protein_coding protein_coding MGP_AJ_T0073362.1 MGP_AJ_G0029855.1 mouse_genomes_project 5 108738622 108739793 - Noc4l protein_coding retained_intron MGP_AJ_T0073363.1 MGP_AJ_G0029855.1 mouse_genomes_project 5 108740845 108743049 - Noc4l protein_coding retained_intron MGP_AJ_T0073364.1 MGP_AJ_G0029855.1 mouse_genomes_project 5 108741019 108743141 - Noc4l protein_coding retained_intron MGP_AJ_T0073365.1 MGP_AJ_G0029855.1 mouse_genomes_project 5 108741139 108743159 - Noc4l protein_coding retained_intron MGP_AJ_T0073366.1 MGP_AJ_G0029855.1 mouse_genomes_project 5 108742794 108743173 - Noc4l protein_coding retained_intron MGP_AJ_T0102628.1 MGP_AJ_G0040370.1 mouse_genomes_project 5 14149666 14153867 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0008044.1 MGP_AJ_G0006566.1 mouse_genomes_project 5 3225113 3226406 + lincRNA lincRNA MGP_AJ_T0070623.1 MGP_AJ_G0029329.1 mouse_genomes_project 5 22675998 22691955 - MGP_AJ_P0070623 Xrcc2 protein_coding protein_coding MGP_AJ_T0070624.1 MGP_AJ_G0029329.1 mouse_genomes_project 5 22678237 22679625 - Xrcc2 protein_coding processed_transcript MGP_AJ_T0070625.1 MGP_AJ_G0029329.1 mouse_genomes_project 5 22682108 22691903 - MGP_AJ_P0070625 Xrcc2 protein_coding protein_coding MGP_AJ_T0070626.1 MGP_AJ_G0029329.1 mouse_genomes_project 5 22682866 22691894 - Xrcc2 protein_coding retained_intron MGP_AJ_T0001803.1 MGP_AJ_G0001718.1 mouse_genomes_project 5 120154058 120157379 + TEC TEC MGP_AJ_T0072556.1 MGP_AJ_G0029667.1 mouse_genomes_project 5 85434588 85480035 + MGP_AJ_P0072556 Smr2 protein_coding protein_coding MGP_AJ_T0073455.1 MGP_AJ_G0029873.1 mouse_genomes_project 5 110488566 110496591 - MGP_AJ_P0073455 Asphd2 protein_coding protein_coding MGP_AJ_T0073456.1 MGP_AJ_G0029873.1 mouse_genomes_project 5 110489656 110494013 - Asphd2 protein_coding processed_transcript MGP_AJ_T0073457.1 MGP_AJ_G0029873.1 mouse_genomes_project 5 110495876 110498402 - MGP_AJ_P0073457 Asphd2 protein_coding protein_coding MGP_AJ_T0073458.1 MGP_AJ_G0029873.1 mouse_genomes_project 5 110496065 110499305 - MGP_AJ_P0073458 Asphd2 protein_coding protein_coding MGP_AJ_T0073459.1 MGP_AJ_G0029873.1 mouse_genomes_project 5 110496153 110498336 - MGP_AJ_P0073459 Asphd2 protein_coding protein_coding MGP_AJ_T0073460.1 MGP_AJ_G0029873.1 mouse_genomes_project 5 110496188 110498741 - MGP_AJ_P0073460 Asphd2 protein_coding protein_coding MGP_AJ_T0073461.1 MGP_AJ_G0029873.1 mouse_genomes_project 5 110496258 110498308 - MGP_AJ_P0073461 Asphd2 protein_coding protein_coding MGP_AJ_T0008416.1 MGP_AJ_G0006823.1 mouse_genomes_project 5 132022746 132081297 - Gm42624 lincRNA lincRNA MGP_AJ_T0015207.1 MGP_AJ_G0013302.1 mouse_genomes_project 5 145398729 145399601 + processed_pseudogene processed_pseudogene MGP_AJ_T0070622.1 MGP_AJ_G0029328.1 mouse_genomes_project 5 22495752 22497713 + MGP_AJ_P0070622 Cct8l1 protein_coding protein_coding MGP_AJ_T0011593.1 MGP_AJ_G0009715.1 mouse_genomes_project 5 28945632 28945934 + Gm24436 misc_RNA misc_RNA MGP_AJ_T0076068.1 MGP_AJ_G0030371.1 mouse_genomes_project 5 148085025 148192291 - MGP_AJ_P0076068 Gm42791 protein_coding protein_coding MGP_AJ_T0076071.1 MGP_AJ_G0030371.1 mouse_genomes_project 5 148177655 148178270 - Gm42791 protein_coding processed_transcript MGP_AJ_T0074940.1 MGP_AJ_G0030135.1 mouse_genomes_project 5 133467389 133469213 - MGP_AJ_P0074940 Cldn4 protein_coding protein_coding MGP_AJ_T0070242.1 MGP_AJ_G0029254.1 mouse_genomes_project 5 5962315 6005389 - MGP_AJ_P0070242 Dmtf1 protein_coding protein_coding MGP_AJ_T0070243.1 MGP_AJ_G0029254.1 mouse_genomes_project 5 5962382 6005332 - MGP_AJ_P0070243 Dmtf1 protein_coding nonsense_mediated_decay MGP_AJ_T0070244.1 MGP_AJ_G0029254.1 mouse_genomes_project 5 5962386 6005362 - MGP_AJ_P0070244 Dmtf1 protein_coding protein_coding MGP_AJ_T0070245.1 MGP_AJ_G0029254.1 mouse_genomes_project 5 5962387 6005372 - MGP_AJ_P0070245 Dmtf1 protein_coding nonsense_mediated_decay MGP_AJ_T0070246.1 MGP_AJ_G0029254.1 mouse_genomes_project 5 5962387 6005365 - MGP_AJ_P0070246 Dmtf1 protein_coding nonsense_mediated_decay MGP_AJ_T0070247.1 MGP_AJ_G0029254.1 mouse_genomes_project 5 5962391 5996754 - MGP_AJ_P0070247 Dmtf1 protein_coding nonsense_mediated_decay MGP_AJ_T0070248.1 MGP_AJ_G0029254.1 mouse_genomes_project 5 5962391 6005356 - MGP_AJ_P0070248 Dmtf1 protein_coding nonsense_mediated_decay MGP_AJ_T0070249.1 MGP_AJ_G0029254.1 mouse_genomes_project 5 5962584 6005284 - MGP_AJ_P0070249 Dmtf1 protein_coding nonsense_mediated_decay MGP_AJ_T0070250.1 MGP_AJ_G0029254.1 mouse_genomes_project 5 5963307 5964246 - Dmtf1 protein_coding retained_intron MGP_AJ_T0070251.1 MGP_AJ_G0029254.1 mouse_genomes_project 5 5963521 6005314 - MGP_AJ_P0070251 Dmtf1 protein_coding protein_coding MGP_AJ_T0070252.1 MGP_AJ_G0029254.1 mouse_genomes_project 5 5964968 5970092 - MGP_AJ_P0070252 Dmtf1 protein_coding nonsense_mediated_decay MGP_AJ_T0070253.1 MGP_AJ_G0029254.1 mouse_genomes_project 5 5965572 6005356 - Dmtf1 protein_coding processed_transcript MGP_AJ_T0070254.1 MGP_AJ_G0029254.1 mouse_genomes_project 5 5965898 6005335 - MGP_AJ_P0070254 Dmtf1 protein_coding unknown_likely_coding MGP_AJ_T0070255.1 MGP_AJ_G0029254.1 mouse_genomes_project 5 5972881 6005350 - Dmtf1 protein_coding retained_intron MGP_AJ_T0070256.1 MGP_AJ_G0029254.1 mouse_genomes_project 5 5974802 6005329 - MGP_AJ_P0070256 Dmtf1 protein_coding protein_coding MGP_AJ_T0070257.1 MGP_AJ_G0029254.1 mouse_genomes_project 5 5976073 5995651 - MGP_AJ_P0070257 Dmtf1 protein_coding protein_coding MGP_AJ_T0070258.1 MGP_AJ_G0029254.1 mouse_genomes_project 5 5983290 6005347 - Dmtf1 protein_coding retained_intron MGP_AJ_T0070259.1 MGP_AJ_G0029254.1 mouse_genomes_project 5 5989973 6005362 - Dmtf1 protein_coding retained_intron MGP_AJ_T0070260.1 MGP_AJ_G0029254.1 mouse_genomes_project 5 5994039 5996544 - MGP_AJ_P0070260 Dmtf1 protein_coding protein_coding MGP_AJ_T0001689.1 MGP_AJ_G0001604.1 mouse_genomes_project 5 70558513 70559032 - TEC TEC MGP_AJ_T0004659.1 MGP_AJ_G0004032.1 mouse_genomes_project 5 28558455 28559775 - 4930566F21Rik antisense antisense MGP_AJ_T0004660.1 MGP_AJ_G0004032.1 mouse_genomes_project 5 28558459 28566999 - 4930566F21Rik antisense antisense MGP_AJ_T0073164.1 MGP_AJ_G0029811.1 mouse_genomes_project 5 105742894 105751959 + MGP_AJ_P0073164 Rpl5 protein_coding protein_coding MGP_AJ_T0073165.1 MGP_AJ_G0029811.1 mouse_genomes_project 5 105742964 105746491 + Rpl5 protein_coding retained_intron MGP_AJ_T0073166.1 MGP_AJ_G0029811.1 mouse_genomes_project 5 105743036 105750950 + MGP_AJ_P0073166 Rpl5 protein_coding unknown_likely_coding MGP_AJ_T0073167.1 MGP_AJ_G0029811.1 mouse_genomes_project 5 105743266 105747196 + MGP_AJ_P0073167 Rpl5 protein_coding protein_coding MGP_AJ_T0073168.1 MGP_AJ_G0029811.1 mouse_genomes_project 5 105744513 105746253 + Rpl5 protein_coding retained_intron MGP_AJ_T0073169.1 MGP_AJ_G0029811.1 mouse_genomes_project 5 105746481 105751004 + Rpl5 protein_coding retained_intron MGP_AJ_T0073170.1 MGP_AJ_G0029811.1 mouse_genomes_project 5 105749074 105751009 + Rpl5 protein_coding retained_intron MGP_AJ_T0074181.1 MGP_AJ_G0030011.1 mouse_genomes_project 5 120699222 120735341 + MGP_AJ_P0074181 Pptc7 protein_coding protein_coding MGP_AJ_T0071934.1 MGP_AJ_G0029550.1 mouse_genomes_project 5 62830323 62922702 - MGP_AJ_P0071934 Pds5a protein_coding protein_coding MGP_AJ_T0071935.1 MGP_AJ_G0029550.1 mouse_genomes_project 5 62832912 62922389 - MGP_AJ_P0071935 Pds5a protein_coding unknown_likely_coding MGP_AJ_T0071936.1 MGP_AJ_G0029550.1 mouse_genomes_project 5 62837980 62922390 - MGP_AJ_P0071936 Pds5a protein_coding protein_coding MGP_AJ_T0071937.1 MGP_AJ_G0029550.1 mouse_genomes_project 5 62838136 62845269 - Pds5a protein_coding retained_intron MGP_AJ_T0071938.1 MGP_AJ_G0029550.1 mouse_genomes_project 5 62845590 62873142 - Pds5a protein_coding retained_intron MGP_AJ_T0071939.1 MGP_AJ_G0029550.1 mouse_genomes_project 5 62845605 62851318 - Pds5a protein_coding retained_intron MGP_AJ_T0071940.1 MGP_AJ_G0029550.1 mouse_genomes_project 5 62846071 62852336 - Pds5a protein_coding retained_intron MGP_AJ_T0071941.1 MGP_AJ_G0029550.1 mouse_genomes_project 5 62846544 62852767 - Pds5a protein_coding retained_intron MGP_AJ_T0071942.1 MGP_AJ_G0029550.1 mouse_genomes_project 5 62860467 62861642 - Pds5a protein_coding retained_intron MGP_AJ_T0071943.1 MGP_AJ_G0029550.1 mouse_genomes_project 5 62864807 62867828 - Pds5a protein_coding retained_intron MGP_AJ_T0071944.1 MGP_AJ_G0029550.1 mouse_genomes_project 5 62868685 62922807 - Pds5a protein_coding retained_intron MGP_AJ_T0071945.1 MGP_AJ_G0029550.1 mouse_genomes_project 5 62876799 62877949 - Pds5a protein_coding retained_intron MGP_AJ_T0071946.1 MGP_AJ_G0029550.1 mouse_genomes_project 5 62888675 62921399 - Pds5a protein_coding retained_intron MGP_AJ_T0072751.1 MGP_AJ_G0029719.1 mouse_genomes_project 5 90017175 90052824 + MGP_AJ_P0072751 Fam47e protein_coding protein_coding MGP_AJ_T0072752.1 MGP_AJ_G0029719.1 mouse_genomes_project 5 90017208 90052724 + MGP_AJ_P0072752 Fam47e protein_coding nonsense_mediated_decay MGP_AJ_T0072753.1 MGP_AJ_G0029719.1 mouse_genomes_project 5 90033559 90052946 + MGP_AJ_P0072753 Fam47e protein_coding protein_coding MGP_AJ_T0072754.1 MGP_AJ_G0029719.1 mouse_genomes_project 5 90033618 90053342 + MGP_AJ_P0072754 Fam47e protein_coding protein_coding MGP_AJ_T0072755.1 MGP_AJ_G0029719.1 mouse_genomes_project 5 90033619 90053343 + MGP_AJ_P0072755 Fam47e protein_coding protein_coding MGP_AJ_T0072756.1 MGP_AJ_G0029719.1 mouse_genomes_project 5 90033625 90047448 + MGP_AJ_P0072756 Fam47e protein_coding protein_coding MGP_AJ_T0072757.1 MGP_AJ_G0029719.1 mouse_genomes_project 5 90033638 90052795 + MGP_AJ_P0072757 Fam47e protein_coding protein_coding MGP_AJ_T0072478.1 MGP_AJ_G0029643.1 mouse_genomes_project 5 84159396 84177830 - MGP_AJ_P0072478 Ugt2b34 protein_coding protein_coding MGP_AJ_T0072479.1 MGP_AJ_G0029643.1 mouse_genomes_project 5 84159396 84177830 - MGP_AJ_P0072479 Ugt2b34 protein_coding protein_coding MGP_AJ_T0099032.1 MGP_AJ_G0037009.1 mouse_genomes_project 5 1614838 1617952 - Gm43112 sense_intronic sense_intronic MGP_AJ_T0001698.1 MGP_AJ_G0001613.1 mouse_genomes_project 5 71687039 71688645 - TEC TEC MGP_AJ_T0072041.1 MGP_AJ_G0029562.1 mouse_genomes_project 5 64565346 64616828 + MGP_AJ_P0072041 Slc30a9 protein_coding protein_coding MGP_AJ_T0072042.1 MGP_AJ_G0029562.1 mouse_genomes_project 5 64565346 64616825 + MGP_AJ_P0072042 Slc30a9 protein_coding protein_coding MGP_AJ_T0072043.1 MGP_AJ_G0029562.1 mouse_genomes_project 5 64565355 64568150 + Slc30a9 protein_coding retained_intron MGP_AJ_T0072044.1 MGP_AJ_G0029562.1 mouse_genomes_project 5 64565356 64614171 + MGP_AJ_P0072044 Slc30a9 protein_coding nonsense_mediated_decay MGP_AJ_T0072045.1 MGP_AJ_G0029562.1 mouse_genomes_project 5 64565575 64577288 + Slc30a9 protein_coding processed_transcript MGP_AJ_T0072046.1 MGP_AJ_G0029562.1 mouse_genomes_project 5 64574094 64600543 + MGP_AJ_P0072046 Slc30a9 protein_coding nonsense_mediated_decay MGP_AJ_T0072047.1 MGP_AJ_G0029562.1 mouse_genomes_project 5 64574120 64587254 + MGP_AJ_P0072047 Slc30a9 protein_coding protein_coding MGP_AJ_T0072048.1 MGP_AJ_G0029562.1 mouse_genomes_project 5 64590914 64611741 + Slc30a9 protein_coding retained_intron MGP_AJ_T0001772.1 MGP_AJ_G0001687.1 mouse_genomes_project 5 113127758 113128316 + TEC TEC MGP_AJ_T0101821.1 MGP_AJ_G0039726.1 mouse_genomes_project 5 69859426 69860609 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0072956.1 MGP_AJ_G0029762.1 mouse_genomes_project 5 100172787 100590790 + MGP_AJ_P0072956 Arhgap24 protein_coding protein_coding MGP_AJ_T0072957.1 MGP_AJ_G0029762.1 mouse_genomes_project 5 100172787 100590789 + MGP_AJ_P0072957 Arhgap24 protein_coding protein_coding MGP_AJ_T0072958.1 MGP_AJ_G0029762.1 mouse_genomes_project 5 100172926 100358839 + Arhgap24 protein_coding retained_intron MGP_AJ_T0072959.1 MGP_AJ_G0029762.1 mouse_genomes_project 5 100355034 100590790 + MGP_AJ_P0072959 Arhgap24 protein_coding protein_coding MGP_AJ_T0072960.1 MGP_AJ_G0029762.1 mouse_genomes_project 5 100414180 100590790 + MGP_AJ_P0072960 Arhgap24 protein_coding protein_coding MGP_AJ_T0072961.1 MGP_AJ_G0029762.1 mouse_genomes_project 5 100460893 100590790 + MGP_AJ_P0072961 Arhgap24 protein_coding protein_coding MGP_AJ_T0072962.1 MGP_AJ_G0029762.1 mouse_genomes_project 5 100501433 100569451 + Arhgap24 protein_coding processed_transcript MGP_AJ_T0072963.1 MGP_AJ_G0029762.1 mouse_genomes_project 5 100538932 100590790 + MGP_AJ_P0072963 Arhgap24 protein_coding protein_coding MGP_AJ_T0099044.1 MGP_AJ_G0037021.1 mouse_genomes_project 5 45178579 45180719 + Gm20475 sense_intronic sense_intronic MGP_AJ_T0101300.1 MGP_AJ_G0039266.1 mouse_genomes_project 5 89655325 89655469 + Gm25290 snoRNA snoRNA MGP_AJ_T0072643.1 MGP_AJ_G0029693.1 mouse_genomes_project 5 88233174 88234720 + MGP_AJ_P0072643 Ppbp protein_coding protein_coding MGP_AJ_T0098691.1 MGP_AJ_G0036675.1 mouse_genomes_project 5 50611169 50611279 + Gm26486 rRNA rRNA MGP_AJ_T0001774.1 MGP_AJ_G0001689.1 mouse_genomes_project 5 113588842 113590746 - TEC TEC MGP_AJ_T0015140.1 MGP_AJ_G0013235.1 mouse_genomes_project 5 115484276 115484654 - processed_pseudogene processed_pseudogene MGP_AJ_T0074833.1 MGP_AJ_G0030122.1 mouse_genomes_project 5 132721825 132731287 - MGP_AJ_P0074833 Ncf1 protein_coding nonsense_mediated_decay MGP_AJ_T0074834.1 MGP_AJ_G0030122.1 mouse_genomes_project 5 132722032 132731287 - MGP_AJ_P0074834 Ncf1 protein_coding protein_coding MGP_AJ_T0074835.1 MGP_AJ_G0030122.1 mouse_genomes_project 5 132722032 132731287 - MGP_AJ_P0074835 Ncf1 protein_coding protein_coding MGP_AJ_T0074836.1 MGP_AJ_G0030122.1 mouse_genomes_project 5 132722032 132731287 - MGP_AJ_P0074836 Ncf1 protein_coding protein_coding MGP_AJ_T0074837.1 MGP_AJ_G0030122.1 mouse_genomes_project 5 132723144 132723995 - Ncf1 protein_coding retained_intron MGP_AJ_T0074838.1 MGP_AJ_G0030122.1 mouse_genomes_project 5 132725231 132730179 - Ncf1 protein_coding retained_intron MGP_AJ_T0074839.1 MGP_AJ_G0030122.1 mouse_genomes_project 5 132727502 132729596 - Ncf1 protein_coding retained_intron MGP_AJ_T0004696.1 MGP_AJ_G0004060.1 mouse_genomes_project 5 45768383 45777484 + Gm20700 antisense antisense MGP_AJ_T0102658.1 MGP_AJ_G0040400.1 mouse_genomes_project 5 148117870 148118093 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0014971.1 MGP_AJ_G0013066.1 mouse_genomes_project 5 47668258 47669000 + processed_pseudogene processed_pseudogene MGP_AJ_T0073217.1 MGP_AJ_G0029822.1 mouse_genomes_project 5 106384116 106415782 - MGP_AJ_P0073217 Cplx1 protein_coding protein_coding MGP_AJ_T0073218.1 MGP_AJ_G0029822.1 mouse_genomes_project 5 106385821 106415758 - MGP_AJ_P0073218 Cplx1 protein_coding protein_coding MGP_AJ_T0073276.1 MGP_AJ_G0029837.1 mouse_genomes_project 5 107244873 107256110 - MGP_AJ_P0073276 protein_coding protein_coding MGP_AJ_T0074536.1 MGP_AJ_G0030064.1 mouse_genomes_project 5 123015141 123024499 + MGP_AJ_P0074536 Tmed2 protein_coding nonsense_mediated_decay MGP_AJ_T0074537.1 MGP_AJ_G0030064.1 mouse_genomes_project 5 123015515 123024717 + MGP_AJ_P0074537 Tmed2 protein_coding protein_coding MGP_AJ_T0074538.1 MGP_AJ_G0030064.1 mouse_genomes_project 5 123015522 123015943 + Tmed2 protein_coding retained_intron MGP_AJ_T0004650.1 MGP_AJ_G0004025.1 mouse_genomes_project 5 21846165 21848556 + Prkag2os2 antisense antisense MGP_AJ_T0001757.1 MGP_AJ_G0001672.1 mouse_genomes_project 5 109421336 109422130 - TEC TEC MGP_AJ_T0015197.1 MGP_AJ_G0013292.1 mouse_genomes_project 5 144355092 144355678 + processed_pseudogene processed_pseudogene MGP_AJ_T0014962.1 MGP_AJ_G0013057.1 mouse_genomes_project 5 41574617 41575254 - processed_pseudogene processed_pseudogene MGP_AJ_T0008119.1 MGP_AJ_G0006615.1 mouse_genomes_project 5 36652573 36671668 + Gm42524 lincRNA lincRNA MGP_AJ_T0001602.1 MGP_AJ_G0001519.1 mouse_genomes_project 5 52684078 52687680 + TEC TEC MGP_AJ_T0100056.1 MGP_AJ_G0038022.1 mouse_genomes_project 5 123132915 123133013 - Gm24854 snRNA snRNA MGP_AJ_T0075614.1 MGP_AJ_G0030270.1 mouse_genomes_project 5 139443900 139445847 - MGP_AJ_P0075614 Grifin protein_coding protein_coding MGP_AJ_T0074063.1 MGP_AJ_G0029995.1 mouse_genomes_project 5 119861622 119865494 - MGP_AJ_P0074063 Adam1a protein_coding protein_coding MGP_AJ_T0008155.1 MGP_AJ_G0006646.1 mouse_genomes_project 5 61596965 61599621 + Gm43837 lincRNA lincRNA MGP_AJ_T0098458.1 MGP_AJ_G0036442.1 mouse_genomes_project 5 134447439 134448737 + pseudogene pseudogene MGP_AJ_T0001506.1 MGP_AJ_G0001424.1 mouse_genomes_project 5 30873737 30877390 - TEC TEC MGP_AJ_T0001458.1 MGP_AJ_G0001379.1 mouse_genomes_project 5 11433401 11437458 + TEC TEC MGP_AJ_T0072495.1 MGP_AJ_G0029653.1 mouse_genomes_project 5 84840753 84874049 - MGP_AJ_P0072495 Sult1b1 protein_coding protein_coding MGP_AJ_T0072496.1 MGP_AJ_G0029653.1 mouse_genomes_project 5 84840780 84872084 - MGP_AJ_P0072496 Sult1b1 protein_coding protein_coding MGP_AJ_T0072497.1 MGP_AJ_G0029653.1 mouse_genomes_project 5 84842103 84871008 - MGP_AJ_P0072497 Sult1b1 protein_coding protein_coding MGP_AJ_T0014889.1 MGP_AJ_G0012984.1 mouse_genomes_project 5 18898240 18898882 - processed_pseudogene processed_pseudogene MGP_AJ_T0073205.1 MGP_AJ_G0029818.1 mouse_genomes_project 5 106250462 106295279 + MGP_AJ_P0073205 Pde6b protein_coding protein_coding MGP_AJ_T0073206.1 MGP_AJ_G0029818.1 mouse_genomes_project 5 106250497 106295203 + Pde6b protein_coding retained_intron MGP_AJ_T0073207.1 MGP_AJ_G0029818.1 mouse_genomes_project 5 106293912 106295933 + Pde6b protein_coding retained_intron MGP_AJ_T0073467.1 MGP_AJ_G0029876.1 mouse_genomes_project 5 110803223 111015387 - MGP_AJ_P0073467 Myo18b protein_coding protein_coding MGP_AJ_T0073468.1 MGP_AJ_G0029876.1 mouse_genomes_project 5 110803225 110881734 - Myo18b protein_coding processed_transcript MGP_AJ_T0073469.1 MGP_AJ_G0029876.1 mouse_genomes_project 5 110888787 110989415 - Myo18b protein_coding processed_transcript MGP_AJ_T0073470.1 MGP_AJ_G0029876.1 mouse_genomes_project 5 110934044 110990325 - MGP_AJ_P0073470 Myo18b protein_coding nonsense_mediated_decay MGP_AJ_T0071727.1 MGP_AJ_G0029510.1 mouse_genomes_project 5 48612771 48714427 - MGP_AJ_P0071727 Ppargc1a protein_coding protein_coding MGP_AJ_T0071728.1 MGP_AJ_G0029510.1 mouse_genomes_project 5 48616174 48714516 - MGP_AJ_P0071728 Ppargc1a protein_coding nonsense_mediated_decay MGP_AJ_T0071729.1 MGP_AJ_G0029510.1 mouse_genomes_project 5 48616701 48728980 - MGP_AJ_P0071729 Ppargc1a protein_coding nonsense_mediated_decay MGP_AJ_T0071730.1 MGP_AJ_G0029510.1 mouse_genomes_project 5 48654298 48729002 - MGP_AJ_P0071730 Ppargc1a protein_coding protein_coding MGP_AJ_T0075299.1 MGP_AJ_G0030202.1 mouse_genomes_project 5 136170033 136176339 - Pcolce protein_coding retained_intron MGP_AJ_T0075300.1 MGP_AJ_G0030202.1 mouse_genomes_project 5 136170033 136176418 - MGP_AJ_P0075300 Pcolce protein_coding protein_coding MGP_AJ_T0075301.1 MGP_AJ_G0030202.1 mouse_genomes_project 5 136170035 136170729 - Pcolce protein_coding retained_intron MGP_AJ_T0075302.1 MGP_AJ_G0030202.1 mouse_genomes_project 5 136170035 136175405 - MGP_AJ_P0075302 Pcolce protein_coding protein_coding MGP_AJ_T0075303.1 MGP_AJ_G0030202.1 mouse_genomes_project 5 136170038 136176307 - MGP_AJ_P0075303 Pcolce protein_coding protein_coding MGP_AJ_T0075304.1 MGP_AJ_G0030202.1 mouse_genomes_project 5 136171948 136173123 - Pcolce protein_coding retained_intron MGP_AJ_T0075305.1 MGP_AJ_G0030202.1 mouse_genomes_project 5 136172015 136176274 - Pcolce protein_coding processed_transcript MGP_AJ_T0075306.1 MGP_AJ_G0030202.1 mouse_genomes_project 5 136172364 136175633 - MGP_AJ_P0075306 Pcolce protein_coding protein_coding MGP_AJ_T0075307.1 MGP_AJ_G0030202.1 mouse_genomes_project 5 136172440 136178693 - MGP_AJ_P0075307 Pcolce protein_coding protein_coding MGP_AJ_T0075308.1 MGP_AJ_G0030202.1 mouse_genomes_project 5 136172440 136178715 - MGP_AJ_P0075308 Pcolce protein_coding protein_coding MGP_AJ_T0075309.1 MGP_AJ_G0030202.1 mouse_genomes_project 5 136172651 136176250 - Pcolce protein_coding retained_intron MGP_AJ_T0075310.1 MGP_AJ_G0030202.1 mouse_genomes_project 5 136173869 136176257 - Pcolce protein_coding processed_transcript MGP_AJ_T0015163.1 MGP_AJ_G0013258.1 mouse_genomes_project 5 134771414 134772189 - processed_pseudogene processed_pseudogene MGP_AJ_T0015053.1 MGP_AJ_G0013148.1 mouse_genomes_project 5 84936368 84936777 + processed_pseudogene processed_pseudogene MGP_AJ_T0073272.1 MGP_AJ_G0029833.1 mouse_genomes_project 5 107026302 107046088 - MGP_AJ_P0073272 protein_coding protein_coding MGP_AJ_T0008042.1 MGP_AJ_G0006564.1 mouse_genomes_project 5 1578815 1593788 - Gm42744 lincRNA lincRNA MGP_AJ_T0073013.1 MGP_AJ_G0029773.1 mouse_genomes_project 5 101769397 101805551 - MGP_AJ_P0073013 Sparcl1 protein_coding protein_coding MGP_AJ_T0073014.1 MGP_AJ_G0029773.1 mouse_genomes_project 5 101783107 101805257 - MGP_AJ_P0073014 Sparcl1 protein_coding protein_coding MGP_AJ_T0070125.1 MGP_AJ_G0029235.1 mouse_genomes_project 5 2293649 2320626 - Cldn12 protein_coding processed_transcript MGP_AJ_T0070126.1 MGP_AJ_G0029235.1 mouse_genomes_project 5 2310737 2320503 - MGP_AJ_P0070126 Cldn12 protein_coding protein_coding MGP_AJ_T0070127.1 MGP_AJ_G0029235.1 mouse_genomes_project 5 2310831 2320587 - MGP_AJ_P0070127 Cldn12 protein_coding protein_coding MGP_AJ_T0070128.1 MGP_AJ_G0029235.1 mouse_genomes_project 5 2310833 2320539 - MGP_AJ_P0070128 Cldn12 protein_coding protein_coding MGP_AJ_T0070129.1 MGP_AJ_G0029235.1 mouse_genomes_project 5 2310945 2320444 - MGP_AJ_P0070129 Cldn12 protein_coding protein_coding MGP_AJ_T0070130.1 MGP_AJ_G0029235.1 mouse_genomes_project 5 2314130 2320503 - MGP_AJ_P0070130 Cldn12 protein_coding protein_coding MGP_AJ_T0070131.1 MGP_AJ_G0029235.1 mouse_genomes_project 5 2316809 2320672 - Cldn12 protein_coding processed_transcript MGP_AJ_T0070132.1 MGP_AJ_G0029235.1 mouse_genomes_project 5 2318937 2320160 - Cldn12 protein_coding processed_transcript MGP_AJ_T0001450.1 MGP_AJ_G0001371.1 mouse_genomes_project 5 9970422 9972919 - TEC TEC MGP_AJ_T0001534.1 MGP_AJ_G0001452.1 mouse_genomes_project 5 41389879 41390694 + TEC TEC MGP_AJ_T0070987.1 MGP_AJ_G0029391.1 mouse_genomes_project 5 28516324 28538500 + MGP_AJ_P0070987 protein_coding protein_coding MGP_AJ_T0070988.1 MGP_AJ_G0029391.1 mouse_genomes_project 5 28516328 28553597 + MGP_AJ_P0070988 protein_coding protein_coding MGP_AJ_T0070989.1 MGP_AJ_G0029391.1 mouse_genomes_project 5 28516343 28545299 + MGP_AJ_P0070989 protein_coding protein_coding MGP_AJ_T0070990.1 MGP_AJ_G0029391.1 mouse_genomes_project 5 28516409 28553592 + MGP_AJ_P0070990 protein_coding protein_coding MGP_AJ_T0070991.1 MGP_AJ_G0029391.1 mouse_genomes_project 5 28537075 28544686 + MGP_AJ_P0070991 protein_coding protein_coding MGP_AJ_T0075015.1 MGP_AJ_G0030151.1 mouse_genomes_project 5 133949454 134098732 - MGP_AJ_P0075015 Hip1 protein_coding protein_coding MGP_AJ_T0075016.1 MGP_AJ_G0030151.1 mouse_genomes_project 5 133949458 133980237 - MGP_AJ_P0075016 Hip1 protein_coding protein_coding MGP_AJ_T0075017.1 MGP_AJ_G0030151.1 mouse_genomes_project 5 133974046 133975226 - Hip1 protein_coding retained_intron MGP_AJ_T0075018.1 MGP_AJ_G0030151.1 mouse_genomes_project 5 133975352 133987531 - MGP_AJ_P0075018 Hip1 protein_coding nonsense_mediated_decay MGP_AJ_T0075019.1 MGP_AJ_G0030151.1 mouse_genomes_project 5 133979527 134098737 - Hip1 protein_coding retained_intron MGP_AJ_T0075020.1 MGP_AJ_G0030151.1 mouse_genomes_project 5 133983622 133999903 - Hip1 protein_coding processed_transcript MGP_AJ_T0075021.1 MGP_AJ_G0030151.1 mouse_genomes_project 5 133997133 134038539 - MGP_AJ_P0075021 Hip1 protein_coding protein_coding MGP_AJ_T0075022.1 MGP_AJ_G0030151.1 mouse_genomes_project 5 133999786 134005591 - Hip1 protein_coding retained_intron MGP_AJ_T0075023.1 MGP_AJ_G0030151.1 mouse_genomes_project 5 134006466 134098732 - Hip1 protein_coding retained_intron MGP_AJ_T0004705.1 MGP_AJ_G0004069.1 mouse_genomes_project 5 63407986 63433569 - 1700126H18Rik antisense antisense MGP_AJ_T0075553.1 MGP_AJ_G0030254.1 mouse_genomes_project 5 138283700 138288350 + MGP_AJ_P0075553 Gper1 protein_coding protein_coding MGP_AJ_T0075554.1 MGP_AJ_G0030254.1 mouse_genomes_project 5 138283829 138286439 + Gper1 protein_coding processed_transcript MGP_AJ_T0015210.1 MGP_AJ_G0013305.1 mouse_genomes_project 5 146580544 146581004 + processed_pseudogene processed_pseudogene MGP_AJ_T0072379.1 MGP_AJ_G0029624.1 mouse_genomes_project 5 74537149 74558134 + MGP_AJ_P0072379 Rest protein_coding protein_coding MGP_AJ_T0072380.1 MGP_AJ_G0029624.1 mouse_genomes_project 5 74537854 74558134 + MGP_AJ_P0072380 Rest protein_coding protein_coding MGP_AJ_T0008431.1 MGP_AJ_G0006835.1 mouse_genomes_project 5 136914986 136915451 + Gm43645 lincRNA lincRNA MGP_AJ_T0001655.1 MGP_AJ_G0001571.1 mouse_genomes_project 5 63694460 63695117 - TEC TEC MGP_AJ_T0014981.1 MGP_AJ_G0013076.1 mouse_genomes_project 5 52804300 52805651 + processed_pseudogene processed_pseudogene MGP_AJ_T0001572.1 MGP_AJ_G0001489.1 mouse_genomes_project 5 46183372 46184704 - TEC TEC MGP_AJ_T0075368.1 MGP_AJ_G0030216.1 mouse_genomes_project 5 136532729 136544936 - MGP_AJ_P0075368 Gjc3 protein_coding protein_coding MGP_AJ_T0075369.1 MGP_AJ_G0030216.1 mouse_genomes_project 5 136544349 136544933 - Gjc3 protein_coding retained_intron MGP_AJ_T0015180.1 MGP_AJ_G0013275.1 mouse_genomes_project 5 138828578 138829070 - processed_pseudogene processed_pseudogene MGP_AJ_T0070394.1 MGP_AJ_G0029287.1 mouse_genomes_project 5 18675435 18699961 + MGP_AJ_P0070394 Pmpcb protein_coding protein_coding MGP_AJ_T0070395.1 MGP_AJ_G0029287.1 mouse_genomes_project 5 18680371 18699956 + Pmpcb protein_coding retained_intron MGP_AJ_T0070396.1 MGP_AJ_G0029287.1 mouse_genomes_project 5 18682096 18684284 + Pmpcb protein_coding retained_intron MGP_AJ_T0070397.1 MGP_AJ_G0029287.1 mouse_genomes_project 5 18685954 18686752 + Pmpcb protein_coding retained_intron MGP_AJ_T0070398.1 MGP_AJ_G0029287.1 mouse_genomes_project 5 18699322 18699950 + Pmpcb protein_coding retained_intron MGP_AJ_T0070399.1 MGP_AJ_G0029287.1 mouse_genomes_project 5 18699448 18699956 + MGP_AJ_P0070399 Pmpcb protein_coding nonsense_mediated_decay MGP_AJ_T0070400.1 MGP_AJ_G0029287.1 mouse_genomes_project 5 18699584 18699950 + Pmpcb protein_coding retained_intron MGP_AJ_T0015126.1 MGP_AJ_G0013221.1 mouse_genomes_project 5 111883960 111884164 + processed_pseudogene processed_pseudogene MGP_AJ_T0008191.1 MGP_AJ_G0006673.1 mouse_genomes_project 5 74269575 74282032 - 1700112J05Rik lincRNA lincRNA MGP_AJ_T0071595.1 MGP_AJ_G0029491.1 mouse_genomes_project 5 40988046 40995374 + MGP_AJ_P0071595 protein_coding nonsense_mediated_decay MGP_AJ_T0071596.1 MGP_AJ_G0029491.1 mouse_genomes_project 5 40988052 41006361 + MGP_AJ_P0071596 protein_coding protein_coding MGP_AJ_T0071597.1 MGP_AJ_G0029491.1 mouse_genomes_project 5 40990605 41005841 + protein_coding retained_intron MGP_AJ_T0071598.1 MGP_AJ_G0029491.1 mouse_genomes_project 5 40999488 41004785 + protein_coding retained_intron MGP_AJ_T0071215.1 MGP_AJ_G0029427.1 mouse_genomes_project 5 31328820 31330274 - Mxd4 protein_coding processed_transcript MGP_AJ_T0071216.1 MGP_AJ_G0029427.1 mouse_genomes_project 5 31328824 31343459 - MGP_AJ_P0071216 Mxd4 protein_coding protein_coding MGP_AJ_T0071217.1 MGP_AJ_G0029427.1 mouse_genomes_project 5 31332328 31343469 - MGP_AJ_P0071217 Mxd4 protein_coding protein_coding MGP_AJ_T0071218.1 MGP_AJ_G0029427.1 mouse_genomes_project 5 31335494 31340122 - Mxd4 protein_coding retained_intron MGP_AJ_T0099062.1 MGP_AJ_G0037038.1 mouse_genomes_project 5 143187992 143192720 + Gm15708 sense_intronic sense_intronic MGP_AJ_T0099063.1 MGP_AJ_G0037038.1 mouse_genomes_project 5 143190323 143192686 + Gm15708 sense_intronic sense_intronic MGP_AJ_T0008268.1 MGP_AJ_G0006732.1 mouse_genomes_project 5 104389959 104390472 + Gm29464 lincRNA lincRNA MGP_AJ_T0001852.1 MGP_AJ_G0001766.1 mouse_genomes_project 5 130170536 130171691 - TEC TEC MGP_AJ_T0099052.1 MGP_AJ_G0037029.1 mouse_genomes_project 5 114762054 114763023 - Gm42854 sense_intronic sense_intronic MGP_AJ_T0010733.1 MGP_AJ_G0008855.1 mouse_genomes_project 5 139306915 139306986 + Mir7038 miRNA miRNA MGP_AJ_T0018169.1 MGP_AJ_G0015584.1 mouse_genomes_project 5 104370110 104511944 - Gm28039 processed_transcript processed_transcript MGP_AJ_T0073983.1 MGP_AJ_G0029976.1 mouse_genomes_project 5 118926709 118959572 - MGP_AJ_P0073983 Dtx1 protein_coding protein_coding MGP_AJ_T0073984.1 MGP_AJ_G0029976.1 mouse_genomes_project 5 118926710 118941925 - Dtx1 protein_coding retained_intron MGP_AJ_T0073985.1 MGP_AJ_G0029976.1 mouse_genomes_project 5 118926756 118928585 - Dtx1 protein_coding retained_intron MGP_AJ_T0073986.1 MGP_AJ_G0029976.1 mouse_genomes_project 5 118927708 118929421 - Dtx1 protein_coding retained_intron MGP_AJ_T0073987.1 MGP_AJ_G0029976.1 mouse_genomes_project 5 118927958 118929319 - Dtx1 protein_coding retained_intron MGP_AJ_T0073988.1 MGP_AJ_G0029976.1 mouse_genomes_project 5 118941242 118952552 - Dtx1 protein_coding processed_transcript MGP_AJ_T0015159.1 MGP_AJ_G0013254.1 mouse_genomes_project 5 133529842 133530014 + processed_pseudogene processed_pseudogene MGP_AJ_T0008455.1 MGP_AJ_G0006856.1 mouse_genomes_project 5 147899775 147907341 + Gm36186 lincRNA lincRNA MGP_AJ_T0001873.1 MGP_AJ_G0001787.1 mouse_genomes_project 5 132677413 132678779 + TEC TEC MGP_AJ_T0001874.1 MGP_AJ_G0001787.1 mouse_genomes_project 5 132677425 132678024 + TEC TEC MGP_AJ_T0008371.1 MGP_AJ_G0006796.1 mouse_genomes_project 5 121622826 121625714 - Gm43409 lincRNA lincRNA MGP_AJ_T0001728.1 MGP_AJ_G0001643.1 mouse_genomes_project 5 95686521 95689030 + TEC TEC MGP_AJ_T0071834.1 MGP_AJ_G0029531.1 mouse_genomes_project 5 61019778 61101661 + MGP_AJ_P0071834 0610040J01Rik protein_coding protein_coding MGP_AJ_T0071835.1 MGP_AJ_G0029531.1 mouse_genomes_project 5 61019935 61100603 + MGP_AJ_P0071835 0610040J01Rik protein_coding protein_coding MGP_AJ_T0071836.1 MGP_AJ_G0029531.1 mouse_genomes_project 5 61078104 61100302 + MGP_AJ_P0071836 0610040J01Rik protein_coding protein_coding MGP_AJ_T0071837.1 MGP_AJ_G0029531.1 mouse_genomes_project 5 61079271 61100565 + MGP_AJ_P0071837 0610040J01Rik protein_coding protein_coding MGP_AJ_T0101316.1 MGP_AJ_G0039282.1 mouse_genomes_project 5 143697111 143697240 + Gm23995 snoRNA snoRNA MGP_AJ_T0098698.1 MGP_AJ_G0036682.1 mouse_genomes_project 5 117508188 117508305 + n-R5s175 rRNA rRNA MGP_AJ_T0015028.1 MGP_AJ_G0013123.1 mouse_genomes_project 5 72516218 72516546 + processed_pseudogene processed_pseudogene MGP_AJ_T0008271.1 MGP_AJ_G0006735.1 mouse_genomes_project 5 105532659 105538012 - 4930428O21Rik lincRNA lincRNA MGP_AJ_T0074296.1 MGP_AJ_G0030026.1 mouse_genomes_project 5 121435894 121450932 + MGP_AJ_P0074296 Orai1 protein_coding protein_coding MGP_AJ_T0074297.1 MGP_AJ_G0030026.1 mouse_genomes_project 5 121435894 121451232 + MGP_AJ_P0074297 Orai1 protein_coding protein_coding MGP_AJ_T0074298.1 MGP_AJ_G0030026.1 mouse_genomes_project 5 121436158 121450266 + Orai1 protein_coding processed_transcript MGP_AJ_T0070475.1 MGP_AJ_G0029299.1 mouse_genomes_project 5 20804451 20809600 - MGP_AJ_P0070475 Tomm7 protein_coding protein_coding MGP_AJ_T0004844.1 MGP_AJ_G0004169.1 mouse_genomes_project 5 130086111 130096782 + 2810432F15Rik antisense antisense MGP_AJ_T0014988.1 MGP_AJ_G0013083.1 mouse_genomes_project 5 55334212 55334434 - processed_pseudogene processed_pseudogene MGP_AJ_T0015148.1 MGP_AJ_G0013243.1 mouse_genomes_project 5 121107488 121107887 - processed_pseudogene processed_pseudogene MGP_AJ_T0073520.1 MGP_AJ_G0029887.1 mouse_genomes_project 5 111859261 111889373 - MGP_AJ_P0073520 Sart3 protein_coding protein_coding MGP_AJ_T0073521.1 MGP_AJ_G0029887.1 mouse_genomes_project 5 111859263 111888540 - MGP_AJ_P0073521 Sart3 protein_coding nonsense_mediated_decay MGP_AJ_T0073522.1 MGP_AJ_G0029887.1 mouse_genomes_project 5 111861493 111862411 - Sart3 protein_coding retained_intron MGP_AJ_T0073523.1 MGP_AJ_G0029887.1 mouse_genomes_project 5 111862585 111872258 - Sart3 protein_coding processed_transcript MGP_AJ_T0073524.1 MGP_AJ_G0029887.1 mouse_genomes_project 5 111871049 111871573 - Sart3 protein_coding processed_transcript MGP_AJ_T0073525.1 MGP_AJ_G0029887.1 mouse_genomes_project 5 111871795 111875030 - Sart3 protein_coding retained_intron MGP_AJ_T0073526.1 MGP_AJ_G0029887.1 mouse_genomes_project 5 111872222 111878092 - Sart3 protein_coding processed_transcript MGP_AJ_T0008325.1 MGP_AJ_G0006764.1 mouse_genomes_project 5 113523851 113525302 - 4930401G09Rik lincRNA lincRNA MGP_AJ_T0075944.1 MGP_AJ_G0030345.1 mouse_genomes_project 5 145275350 145290580 - MGP_AJ_P0075944 protein_coding protein_coding MGP_AJ_T0018191.1 MGP_AJ_G0015591.1 mouse_genomes_project 5 128279506 128290482 + processed_transcript processed_transcript MGP_AJ_T0018192.1 MGP_AJ_G0015591.1 mouse_genomes_project 5 128279947 128289931 + processed_transcript processed_transcript MGP_AJ_T0018193.1 MGP_AJ_G0015591.1 mouse_genomes_project 5 128282177 128284332 + processed_transcript retained_intron MGP_AJ_T0018194.1 MGP_AJ_G0015591.1 mouse_genomes_project 5 128285450 128286767 + processed_transcript retained_intron MGP_AJ_T0018195.1 MGP_AJ_G0015591.1 mouse_genomes_project 5 128286841 128289976 + processed_transcript processed_transcript MGP_AJ_T0018196.1 MGP_AJ_G0015591.1 mouse_genomes_project 5 128289079 128290093 + processed_transcript processed_transcript MGP_AJ_T0073256.1 MGP_AJ_G0029827.1 mouse_genomes_project 5 106538014 106543780 - MGP_AJ_P0073256 Slc26a1 protein_coding protein_coding MGP_AJ_T0073257.1 MGP_AJ_G0029827.1 mouse_genomes_project 5 106538743 106542964 - MGP_AJ_P0073257 Slc26a1 protein_coding protein_coding MGP_AJ_T0073258.1 MGP_AJ_G0029827.1 mouse_genomes_project 5 106538760 106542964 - MGP_AJ_P0073258 Slc26a1 protein_coding protein_coding MGP_AJ_T0073259.1 MGP_AJ_G0029827.1 mouse_genomes_project 5 106540293 106542996 - MGP_AJ_P0073259 Slc26a1 protein_coding protein_coding MGP_AJ_T0001605.1 MGP_AJ_G0001522.1 mouse_genomes_project 5 54825189 54825344 + TEC TEC MGP_AJ_T0072773.1 MGP_AJ_G0029723.1 mouse_genomes_project 5 90505242 90509142 - MGP_AJ_P0072773 Sowahb protein_coding protein_coding MGP_AJ_T0008280.1 MGP_AJ_G0006740.1 mouse_genomes_project 5 108338982 108350587 + Gm26718 lincRNA lincRNA MGP_AJ_T0004847.1 MGP_AJ_G0004172.1 mouse_genomes_project 5 132967665 132969706 + Gm42882 antisense antisense MGP_AJ_T0071209.1 MGP_AJ_G0029426.1 mouse_genomes_project 5 31308933 31324468 - MGP_AJ_P0071209 Haus3 protein_coding protein_coding MGP_AJ_T0071210.1 MGP_AJ_G0029426.1 mouse_genomes_project 5 31317605 31324389 - Haus3 protein_coding retained_intron MGP_AJ_T0071211.1 MGP_AJ_G0029426.1 mouse_genomes_project 5 31317842 31318645 - Haus3 protein_coding processed_transcript MGP_AJ_T0071212.1 MGP_AJ_G0029426.1 mouse_genomes_project 5 31322873 31324393 - Haus3 protein_coding processed_transcript MGP_AJ_T0071213.1 MGP_AJ_G0029426.1 mouse_genomes_project 5 31322965 31324444 - MGP_AJ_P0071213 Haus3 protein_coding protein_coding MGP_AJ_T0071214.1 MGP_AJ_G0029426.1 mouse_genomes_project 5 31323178 31324374 - MGP_AJ_P0071214 Haus3 protein_coding protein_coding MGP_AJ_T0004731.1 MGP_AJ_G0004091.1 mouse_genomes_project 5 85252204 85327129 - 1700066N21Rik antisense antisense MGP_AJ_T0001762.1 MGP_AJ_G0001677.1 mouse_genomes_project 5 111222768 111223332 + TEC TEC MGP_AJ_T0071830.1 MGP_AJ_G0029530.1 mouse_genomes_project 5 60850547 61000016 + Nwd2 protein_coding retained_intron MGP_AJ_T0071831.1 MGP_AJ_G0029530.1 mouse_genomes_project 5 60850553 61017981 + MGP_AJ_P0071831 Nwd2 protein_coding protein_coding MGP_AJ_T0071832.1 MGP_AJ_G0029530.1 mouse_genomes_project 5 60850778 61008056 + MGP_AJ_P0071832 Nwd2 protein_coding nonsense_mediated_decay MGP_AJ_T0071833.1 MGP_AJ_G0029530.1 mouse_genomes_project 5 61007870 61017981 + MGP_AJ_P0071833 Nwd2 protein_coding protein_coding MGP_AJ_T0073427.1 MGP_AJ_G0029867.1 mouse_genomes_project 5 110358107 110371941 + MGP_AJ_P0073427 Crybb1 protein_coding protein_coding MGP_AJ_T0073428.1 MGP_AJ_G0029867.1 mouse_genomes_project 5 110358137 110371813 + MGP_AJ_P0073428 Crybb1 protein_coding protein_coding MGP_AJ_T0073429.1 MGP_AJ_G0029867.1 mouse_genomes_project 5 110358166 110371858 + MGP_AJ_P0073429 Crybb1 protein_coding protein_coding MGP_AJ_T0070276.1 MGP_AJ_G0029258.1 mouse_genomes_project 5 9962343 10155787 + Sema3a protein_coding processed_transcript MGP_AJ_T0070277.1 MGP_AJ_G0029258.1 mouse_genomes_project 5 9962421 10138069 + Sema3a protein_coding retained_intron MGP_AJ_T0070278.1 MGP_AJ_G0029258.1 mouse_genomes_project 5 9962522 10370207 + Sema3a protein_coding retained_intron MGP_AJ_T0070279.1 MGP_AJ_G0029258.1 mouse_genomes_project 5 10241911 10449603 + MGP_AJ_P0070279 Sema3a protein_coding protein_coding MGP_AJ_T0070280.1 MGP_AJ_G0029258.1 mouse_genomes_project 5 10244426 10297140 + MGP_AJ_P0070280 Sema3a protein_coding protein_coding MGP_AJ_T0070281.1 MGP_AJ_G0029258.1 mouse_genomes_project 5 10244735 10447963 + MGP_AJ_P0070281 Sema3a protein_coding protein_coding MGP_AJ_T0070282.1 MGP_AJ_G0029258.1 mouse_genomes_project 5 10245060 10451180 + MGP_AJ_P0070282 Sema3a protein_coding protein_coding MGP_AJ_T0070283.1 MGP_AJ_G0029258.1 mouse_genomes_project 5 10245075 10297110 + MGP_AJ_P0070283 Sema3a protein_coding protein_coding MGP_AJ_T0011615.1 MGP_AJ_G0009737.1 mouse_genomes_project 5 138712173 138712494 + Gm24146 misc_RNA misc_RNA MGP_AJ_T0001713.1 MGP_AJ_G0001628.1 mouse_genomes_project 5 88268321 88271454 + TEC TEC MGP_AJ_T0102022.1 MGP_AJ_G0039828.1 mouse_genomes_project 5 69815947 69819611 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_AJ_T0004841.1 MGP_AJ_G0004166.1 mouse_genomes_project 5 126783730 126789728 + Gm42817 antisense antisense MGP_AJ_T0072765.1 MGP_AJ_G0029722.1 mouse_genomes_project 5 90139759 90427931 + MGP_AJ_P0072765 Shroom3 protein_coding protein_coding MGP_AJ_T0072766.1 MGP_AJ_G0029722.1 mouse_genomes_project 5 90139801 90427893 + MGP_AJ_P0072766 Shroom3 protein_coding protein_coding MGP_AJ_T0072767.1 MGP_AJ_G0029722.1 mouse_genomes_project 5 90261713 90266982 + Shroom3 protein_coding processed_transcript MGP_AJ_T0072768.1 MGP_AJ_G0029722.1 mouse_genomes_project 5 90266963 90294299 + Shroom3 protein_coding processed_transcript MGP_AJ_T0072769.1 MGP_AJ_G0029722.1 mouse_genomes_project 5 90384692 90399905 + MGP_AJ_P0072769 Shroom3 protein_coding protein_coding MGP_AJ_T0072770.1 MGP_AJ_G0029722.1 mouse_genomes_project 5 90398088 90401697 + Shroom3 protein_coding retained_intron MGP_AJ_T0072771.1 MGP_AJ_G0029722.1 mouse_genomes_project 5 90407334 90408245 + Shroom3 protein_coding retained_intron MGP_AJ_T0072772.1 MGP_AJ_G0029722.1 mouse_genomes_project 5 90421793 90427959 + Shroom3 protein_coding retained_intron MGP_AJ_T0011589.1 MGP_AJ_G0009711.1 mouse_genomes_project 5 20462143 20462473 - Gm25219 misc_RNA misc_RNA MGP_AJ_T0073016.1 MGP_AJ_G0029775.1 mouse_genomes_project 5 101894492 101906019 + MGP_AJ_P0073016 Dmp1 protein_coding protein_coding MGP_AJ_T0010696.1 MGP_AJ_G0008818.1 mouse_genomes_project 5 101737439 101737500 + Mir5619 miRNA miRNA MGP_AJ_T0001598.1 MGP_AJ_G0001515.1 mouse_genomes_project 5 49732518 49734920 - TEC TEC MGP_AJ_T0018155.1 MGP_AJ_G0015578.1 mouse_genomes_project 5 62992125 62995009 - N4bp2os processed_transcript antisense MGP_AJ_T0018156.1 MGP_AJ_G0015578.1 mouse_genomes_project 5 62992579 62994500 - N4bp2os processed_transcript antisense MGP_AJ_T0018157.1 MGP_AJ_G0015578.1 mouse_genomes_project 5 62993516 62995535 - N4bp2os processed_transcript retained_intron MGP_AJ_T0015122.1 MGP_AJ_G0013217.1 mouse_genomes_project 5 108772690 108774382 - processed_pseudogene processed_pseudogene MGP_AJ_T0015035.1 MGP_AJ_G0013130.1 mouse_genomes_project 5 74497082 74497655 + processed_pseudogene processed_pseudogene MGP_AJ_T0073907.1 MGP_AJ_G0029958.1 mouse_genomes_project 5 116358772 116380401 + Hrk protein_coding processed_transcript MGP_AJ_T0073908.1 MGP_AJ_G0029958.1 mouse_genomes_project 5 116363874 116385047 + MGP_AJ_P0073908 Hrk protein_coding protein_coding MGP_AJ_T0075359.1 MGP_AJ_G0030213.1 mouse_genomes_project 5 136362987 136395458 + MGP_AJ_P0075359 protein_coding unknown_likely_coding MGP_AJ_T0075360.1 MGP_AJ_G0030213.1 mouse_genomes_project 5 136368783 136371994 + protein_coding retained_intron MGP_AJ_T0075361.1 MGP_AJ_G0030213.1 mouse_genomes_project 5 136375303 136377127 + protein_coding retained_intron MGP_AJ_T0075362.1 MGP_AJ_G0030213.1 mouse_genomes_project 5 136375532 136387671 + protein_coding processed_transcript MGP_AJ_T0075363.1 MGP_AJ_G0030213.1 mouse_genomes_project 5 136386887 136395160 + MGP_AJ_P0075363 protein_coding protein_coding MGP_AJ_T0001476.1 MGP_AJ_G0001397.1 mouse_genomes_project 5 21125220 21127815 + TEC TEC MGP_AJ_T0015095.1 MGP_AJ_G0013190.1 mouse_genomes_project 5 103667119 103667585 + processed_pseudogene processed_pseudogene MGP_AJ_T0072921.1 MGP_AJ_G0029755.1 mouse_genomes_project 5 98351936 98371450 - MGP_AJ_P0072921 Coq2 protein_coding protein_coding MGP_AJ_T0072922.1 MGP_AJ_G0029755.1 mouse_genomes_project 5 98352471 98371365 - MGP_AJ_P0072922 Coq2 protein_coding nonsense_mediated_decay MGP_AJ_T0072923.1 MGP_AJ_G0029755.1 mouse_genomes_project 5 98355149 98371458 - MGP_AJ_P0072923 Coq2 protein_coding nonsense_mediated_decay MGP_AJ_T0076035.1 MGP_AJ_G0030366.1 mouse_genomes_project 5 147059928 147076111 - MGP_AJ_P0076035 Slc46a3 protein_coding protein_coding MGP_AJ_T0076036.1 MGP_AJ_G0030366.1 mouse_genomes_project 5 147059932 147076111 - MGP_AJ_P0076036 Slc46a3 protein_coding protein_coding MGP_AJ_T0076037.1 MGP_AJ_G0030366.1 mouse_genomes_project 5 147060050 147061361 - Slc46a3 protein_coding retained_intron MGP_AJ_T0076038.1 MGP_AJ_G0030366.1 mouse_genomes_project 5 147075178 147076111 - MGP_AJ_P0076038 Slc46a3 protein_coding protein_coding MGP_AJ_T0001821.1 MGP_AJ_G0001736.1 mouse_genomes_project 5 122747715 122749321 - TEC TEC MGP_AJ_T0015205.1 MGP_AJ_G0013300.1 mouse_genomes_project 5 145095921 145096738 + processed_pseudogene processed_pseudogene MGP_AJ_T0075703.1 MGP_AJ_G0030289.1 mouse_genomes_project 5 141896056 141909556 + MGP_AJ_P0075703 Fscn1 protein_coding protein_coding MGP_AJ_T0075704.1 MGP_AJ_G0030289.1 mouse_genomes_project 5 141896089 141909554 + MGP_AJ_P0075704 Fscn1 protein_coding protein_coding MGP_AJ_T0075705.1 MGP_AJ_G0030289.1 mouse_genomes_project 5 141896556 141908541 + MGP_AJ_P0075705 Fscn1 protein_coding protein_coding MGP_AJ_T0075706.1 MGP_AJ_G0030289.1 mouse_genomes_project 5 141898662 141906439 + Fscn1 protein_coding processed_transcript MGP_AJ_T0075707.1 MGP_AJ_G0030289.1 mouse_genomes_project 5 141898959 141908324 + Fscn1 protein_coding processed_transcript MGP_AJ_T0075708.1 MGP_AJ_G0030289.1 mouse_genomes_project 5 141900242 141906561 + Fscn1 protein_coding processed_transcript MGP_AJ_T0075709.1 MGP_AJ_G0030289.1 mouse_genomes_project 5 141905971 141908360 + Fscn1 protein_coding retained_intron MGP_AJ_T0071123.1 MGP_AJ_G0029414.1 mouse_genomes_project 5 30752397 30781709 - MGP_AJ_P0071123 Fam53a protein_coding protein_coding MGP_AJ_T0071124.1 MGP_AJ_G0029414.1 mouse_genomes_project 5 30752406 30780986 - MGP_AJ_P0071124 Fam53a protein_coding protein_coding MGP_AJ_T0071125.1 MGP_AJ_G0029414.1 mouse_genomes_project 5 30752406 30781696 - MGP_AJ_P0071125 Fam53a protein_coding protein_coding MGP_AJ_T0071126.1 MGP_AJ_G0029414.1 mouse_genomes_project 5 30752406 30781662 - MGP_AJ_P0071126 Fam53a protein_coding nonsense_mediated_decay MGP_AJ_T0071127.1 MGP_AJ_G0029414.1 mouse_genomes_project 5 30760263 30781657 - MGP_AJ_P0071127 Fam53a protein_coding nonsense_mediated_decay MGP_AJ_T0071128.1 MGP_AJ_G0029414.1 mouse_genomes_project 5 30760436 30781673 - MGP_AJ_P0071128 Fam53a protein_coding protein_coding MGP_AJ_T0071129.1 MGP_AJ_G0029414.1 mouse_genomes_project 5 30762508 30781136 - MGP_AJ_P0071129 Fam53a protein_coding protein_coding MGP_AJ_T0071130.1 MGP_AJ_G0029414.1 mouse_genomes_project 5 30766900 30781679 - Fam53a protein_coding processed_transcript MGP_AJ_T0072559.1 MGP_AJ_G0029670.1 mouse_genomes_project 5 85769175 85781242 + MGP_AJ_P0072559 Prol1 protein_coding protein_coding MGP_AJ_T0010719.1 MGP_AJ_G0008841.1 mouse_genomes_project 5 134291013 134291097 - Mir7034 miRNA miRNA MGP_AJ_T0102632.1 MGP_AJ_G0040374.1 mouse_genomes_project 5 81139119 81139708 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0075331.1 MGP_AJ_G0030208.1 mouse_genomes_project 5 136216010 136254127 - MGP_AJ_P0075331 Agfg2 protein_coding protein_coding MGP_AJ_T0075332.1 MGP_AJ_G0030208.1 mouse_genomes_project 5 136216987 136254081 - MGP_AJ_P0075332 Agfg2 protein_coding protein_coding MGP_AJ_T0075333.1 MGP_AJ_G0030208.1 mouse_genomes_project 5 136217285 136228962 - Agfg2 protein_coding retained_intron MGP_AJ_T0075334.1 MGP_AJ_G0030208.1 mouse_genomes_project 5 136220301 136254127 - MGP_AJ_P0075334 Agfg2 protein_coding protein_coding MGP_AJ_T0075335.1 MGP_AJ_G0030208.1 mouse_genomes_project 5 136222076 136231516 - MGP_AJ_P0075335 Agfg2 protein_coding protein_coding MGP_AJ_T0075336.1 MGP_AJ_G0030208.1 mouse_genomes_project 5 136230009 136254094 - Agfg2 protein_coding retained_intron MGP_AJ_T0001448.1 MGP_AJ_G0001369.1 mouse_genomes_project 5 8997814 9000720 - TEC TEC MGP_AJ_T0072079.1 MGP_AJ_G0029571.1 mouse_genomes_project 5 66797241 66812034 + MGP_AJ_P0072079 Guf1 protein_coding nonsense_mediated_decay MGP_AJ_T0072080.1 MGP_AJ_G0029571.1 mouse_genomes_project 5 66797271 66807023 + Guf1 protein_coding retained_intron MGP_AJ_T0072081.1 MGP_AJ_G0029571.1 mouse_genomes_project 5 66797271 66807183 + MGP_AJ_P0072081 Guf1 protein_coding nonsense_mediated_decay MGP_AJ_T0072082.1 MGP_AJ_G0029571.1 mouse_genomes_project 5 66797279 66813408 + MGP_AJ_P0072082 Guf1 protein_coding protein_coding MGP_AJ_T0072083.1 MGP_AJ_G0029571.1 mouse_genomes_project 5 66797306 66812035 + MGP_AJ_P0072083 Guf1 protein_coding protein_coding MGP_AJ_T0072084.1 MGP_AJ_G0029571.1 mouse_genomes_project 5 66797391 66808039 + MGP_AJ_P0072084 Guf1 protein_coding nonsense_mediated_decay MGP_AJ_T0072085.1 MGP_AJ_G0029571.1 mouse_genomes_project 5 66797412 66812079 + MGP_AJ_P0072085 Guf1 protein_coding protein_coding MGP_AJ_T0072086.1 MGP_AJ_G0029571.1 mouse_genomes_project 5 66807037 66816277 + Guf1 protein_coding retained_intron MGP_AJ_T0072087.1 MGP_AJ_G0029571.1 mouse_genomes_project 5 66810504 66811787 + Guf1 protein_coding retained_intron MGP_AJ_T0073232.1 MGP_AJ_G0029824.1 mouse_genomes_project 5 106496211 106511590 + MGP_AJ_P0073232 Tmem175 protein_coding protein_coding MGP_AJ_T0073233.1 MGP_AJ_G0029824.1 mouse_genomes_project 5 106496273 106516339 + MGP_AJ_P0073233 Tmem175 protein_coding protein_coding MGP_AJ_T0073234.1 MGP_AJ_G0029824.1 mouse_genomes_project 5 106496443 106514819 + MGP_AJ_P0073234 Tmem175 protein_coding protein_coding MGP_AJ_T0073235.1 MGP_AJ_G0029824.1 mouse_genomes_project 5 106496450 106514227 + MGP_AJ_P0073235 Tmem175 protein_coding protein_coding MGP_AJ_T0073236.1 MGP_AJ_G0029824.1 mouse_genomes_project 5 106509242 106510758 + Tmem175 protein_coding retained_intron MGP_AJ_T0073237.1 MGP_AJ_G0029824.1 mouse_genomes_project 5 106511884 106512676 + Tmem175 protein_coding processed_transcript MGP_AJ_T0008265.1 MGP_AJ_G0006730.1 mouse_genomes_project 5 104276094 104281300 - Gm26872 lincRNA lincRNA MGP_AJ_T0008348.1 MGP_AJ_G0006783.1 mouse_genomes_project 5 117845451 117853927 + Gm16063 lincRNA lincRNA MGP_AJ_T0074737.1 MGP_AJ_G0030104.1 mouse_genomes_project 5 128392068 128437216 + MGP_AJ_P0074737 Vkorc1l1 protein_coding protein_coding MGP_AJ_T0074738.1 MGP_AJ_G0030104.1 mouse_genomes_project 5 128392207 128439152 + MGP_AJ_P0074738 Vkorc1l1 protein_coding protein_coding MGP_AJ_T0074739.1 MGP_AJ_G0030104.1 mouse_genomes_project 5 128392272 128434870 + MGP_AJ_P0074739 Vkorc1l1 protein_coding nonsense_mediated_decay MGP_AJ_T0071423.1 MGP_AJ_G0029459.1 mouse_genomes_project 5 33793692 33862703 - MGP_AJ_P0071423 D5Ertd579e protein_coding protein_coding MGP_AJ_T0071424.1 MGP_AJ_G0029459.1 mouse_genomes_project 5 33795459 33806930 - MGP_AJ_P0071424 D5Ertd579e protein_coding protein_coding MGP_AJ_T0071425.1 MGP_AJ_G0029459.1 mouse_genomes_project 5 33809155 33814456 - D5Ertd579e protein_coding processed_transcript MGP_AJ_T0071426.1 MGP_AJ_G0029459.1 mouse_genomes_project 5 33811065 33862727 - D5Ertd579e protein_coding retained_intron MGP_AJ_T0071427.1 MGP_AJ_G0029459.1 mouse_genomes_project 5 33820264 33862703 - D5Ertd579e protein_coding retained_intron MGP_AJ_T0071428.1 MGP_AJ_G0029459.1 mouse_genomes_project 5 33838125 33862790 - MGP_AJ_P0071428 D5Ertd579e protein_coding protein_coding MGP_AJ_T0071429.1 MGP_AJ_G0029459.1 mouse_genomes_project 5 33855747 33862736 - D5Ertd579e protein_coding retained_intron MGP_AJ_T0101299.1 MGP_AJ_G0039265.1 mouse_genomes_project 5 87275652 87275781 + Gm25758 snoRNA snoRNA MGP_AJ_T0015146.1 MGP_AJ_G0013241.1 mouse_genomes_project 5 120716971 120717589 + processed_pseudogene processed_pseudogene MGP_AJ_T0073219.1 MGP_AJ_G0029823.1 mouse_genomes_project 5 106435545 106457757 - MGP_AJ_P0073219 Gak protein_coding protein_coding MGP_AJ_T0073220.1 MGP_AJ_G0029823.1 mouse_genomes_project 5 106435548 106496181 - MGP_AJ_P0073220 Gak protein_coding nonsense_mediated_decay MGP_AJ_T0073221.1 MGP_AJ_G0029823.1 mouse_genomes_project 5 106435548 106496181 - MGP_AJ_P0073221 Gak protein_coding protein_coding MGP_AJ_T0073222.1 MGP_AJ_G0029823.1 mouse_genomes_project 5 106435554 106496181 - MGP_AJ_P0073222 Gak protein_coding nonsense_mediated_decay MGP_AJ_T0073223.1 MGP_AJ_G0029823.1 mouse_genomes_project 5 106436307 106438000 - Gak protein_coding retained_intron MGP_AJ_T0073224.1 MGP_AJ_G0029823.1 mouse_genomes_project 5 106437565 106496197 - MGP_AJ_P0073224 Gak protein_coding nonsense_mediated_decay MGP_AJ_T0073225.1 MGP_AJ_G0029823.1 mouse_genomes_project 5 106438105 106443373 - Gak protein_coding processed_transcript MGP_AJ_T0073226.1 MGP_AJ_G0029823.1 mouse_genomes_project 5 106443029 106447086 - Gak protein_coding retained_intron MGP_AJ_T0073227.1 MGP_AJ_G0029823.1 mouse_genomes_project 5 106446206 106491497 - Gak protein_coding retained_intron MGP_AJ_T0073228.1 MGP_AJ_G0029823.1 mouse_genomes_project 5 106449223 106457793 - MGP_AJ_P0073228 Gak protein_coding protein_coding MGP_AJ_T0073229.1 MGP_AJ_G0029823.1 mouse_genomes_project 5 106450499 106463066 - MGP_AJ_P0073229 Gak protein_coding nonsense_mediated_decay MGP_AJ_T0073230.1 MGP_AJ_G0029823.1 mouse_genomes_project 5 106479980 106495865 - Gak protein_coding processed_transcript MGP_AJ_T0073231.1 MGP_AJ_G0029823.1 mouse_genomes_project 5 106489714 106496135 - MGP_AJ_P0073231 Gak protein_coding nonsense_mediated_decay MGP_AJ_T0001781.1 MGP_AJ_G0001696.1 mouse_genomes_project 5 115010942 115011375 + TEC TEC MGP_AJ_T0004646.1 MGP_AJ_G0004022.1 mouse_genomes_project 5 21304085 21307379 + Gm15589 antisense antisense MGP_AJ_T0074647.1 MGP_AJ_G0030086.1 mouse_genomes_project 5 127055060 127058308 + MGP_AJ_P0074647 Fzd10 protein_coding protein_coding MGP_AJ_T0001690.1 MGP_AJ_G0001605.1 mouse_genomes_project 5 70561803 70562796 + TEC TEC MGP_AJ_T0004792.1 MGP_AJ_G0004134.1 mouse_genomes_project 5 114441122 114442056 + Gm13837 antisense antisense MGP_AJ_T0008288.1 MGP_AJ_G0006744.1 mouse_genomes_project 5 108870601 108871842 + Gm26515 lincRNA lincRNA MGP_AJ_T0001455.1 MGP_AJ_G0001376.1 mouse_genomes_project 5 10465143 10467000 - TEC TEC MGP_AJ_T0074202.1 MGP_AJ_G0030016.1 mouse_genomes_project 5 120800762 120811158 + Arpc3 protein_coding retained_intron MGP_AJ_T0074203.1 MGP_AJ_G0030016.1 mouse_genomes_project 5 120800806 120806024 + Arpc3 protein_coding retained_intron MGP_AJ_T0074204.1 MGP_AJ_G0030016.1 mouse_genomes_project 5 120800832 120814763 + MGP_AJ_P0074204 Arpc3 protein_coding protein_coding MGP_AJ_T0074205.1 MGP_AJ_G0030016.1 mouse_genomes_project 5 120805697 120823030 + MGP_AJ_P0074205 Arpc3 protein_coding protein_coding MGP_AJ_T0074206.1 MGP_AJ_G0030016.1 mouse_genomes_project 5 120809102 120814978 + MGP_AJ_P0074206 Arpc3 protein_coding protein_coding MGP_AJ_T0074207.1 MGP_AJ_G0030016.1 mouse_genomes_project 5 120809229 120814969 + MGP_AJ_P0074207 Arpc3 protein_coding protein_coding MGP_AJ_T0074208.1 MGP_AJ_G0030016.1 mouse_genomes_project 5 120812245 120813613 + Arpc3 protein_coding retained_intron MGP_AJ_T0014960.1 MGP_AJ_G0013055.1 mouse_genomes_project 5 41113949 41114529 - processed_pseudogene processed_pseudogene MGP_AJ_T0008051.1 MGP_AJ_G0006573.1 mouse_genomes_project 5 10668803 10671575 + lincRNA lincRNA MGP_AJ_T0004765.1 MGP_AJ_G0004113.1 mouse_genomes_project 5 106632506 106637705 + 1700047L14Rik antisense antisense MGP_AJ_T0071032.1 MGP_AJ_G0029398.1 mouse_genomes_project 5 28771705 28805906 + MGP_AJ_P0071032 Bre protein_coding protein_coding MGP_AJ_T0071033.1 MGP_AJ_G0029398.1 mouse_genomes_project 5 28771925 28806326 + Bre protein_coding retained_intron MGP_AJ_T0071034.1 MGP_AJ_G0029398.1 mouse_genomes_project 5 28771951 28782676 + Bre protein_coding processed_transcript MGP_AJ_T0071035.1 MGP_AJ_G0029398.1 mouse_genomes_project 5 28771960 29155971 + MGP_AJ_P0071035 Bre protein_coding protein_coding MGP_AJ_T0071036.1 MGP_AJ_G0029398.1 mouse_genomes_project 5 28771961 29074012 + Bre protein_coding retained_intron MGP_AJ_T0071037.1 MGP_AJ_G0029398.1 mouse_genomes_project 5 28771969 28906885 + Bre protein_coding retained_intron MGP_AJ_T0071038.1 MGP_AJ_G0029398.1 mouse_genomes_project 5 28771985 29155864 + MGP_AJ_P0071038 Bre protein_coding protein_coding MGP_AJ_T0071039.1 MGP_AJ_G0029398.1 mouse_genomes_project 5 28772005 29155756 + MGP_AJ_P0071039 Bre protein_coding protein_coding MGP_AJ_T0071040.1 MGP_AJ_G0029398.1 mouse_genomes_project 5 28772005 29155756 + MGP_AJ_P0071040 Bre protein_coding protein_coding MGP_AJ_T0071041.1 MGP_AJ_G0029398.1 mouse_genomes_project 5 28772005 29155756 + MGP_AJ_P0071041 Bre protein_coding protein_coding MGP_AJ_T0071042.1 MGP_AJ_G0029398.1 mouse_genomes_project 5 28772006 28896918 + MGP_AJ_P0071042 Bre protein_coding nonsense_mediated_decay MGP_AJ_T0071043.1 MGP_AJ_G0029398.1 mouse_genomes_project 5 28775833 29128795 + MGP_AJ_P0071043 Bre protein_coding nonsense_mediated_decay MGP_AJ_T0071044.1 MGP_AJ_G0029398.1 mouse_genomes_project 5 28861575 28896999 + Bre protein_coding processed_transcript MGP_AJ_T0071045.1 MGP_AJ_G0029398.1 mouse_genomes_project 5 29117282 29155770 + Bre protein_coding processed_transcript MGP_AJ_T0071046.1 MGP_AJ_G0029398.1 mouse_genomes_project 5 29150738 29155763 + Bre protein_coding processed_transcript MGP_AJ_T0001611.1 MGP_AJ_G0001528.1 mouse_genomes_project 5 55111376 55112731 + TEC TEC MGP_AJ_T0073606.1 MGP_AJ_G0029902.1 mouse_genomes_project 5 112518499 112559077 + MGP_AJ_P0073606 Ube3b protein_coding protein_coding MGP_AJ_T0073607.1 MGP_AJ_G0029902.1 mouse_genomes_project 5 112518718 112559076 + MGP_AJ_P0073607 Ube3b protein_coding nonsense_mediated_decay MGP_AJ_T0073608.1 MGP_AJ_G0029902.1 mouse_genomes_project 5 112518725 112530070 + MGP_AJ_P0073608 Ube3b protein_coding nonsense_mediated_decay MGP_AJ_T0073609.1 MGP_AJ_G0029902.1 mouse_genomes_project 5 112536679 112559076 + MGP_AJ_P0073609 Ube3b protein_coding nonsense_mediated_decay MGP_AJ_T0073610.1 MGP_AJ_G0029902.1 mouse_genomes_project 5 112540623 112549028 + Ube3b protein_coding processed_transcript MGP_AJ_T0004816.1 MGP_AJ_G0004150.1 mouse_genomes_project 5 120439106 120443461 + Gm3970 antisense antisense MGP_AJ_T0004734.1 MGP_AJ_G0004093.1 mouse_genomes_project 5 87957534 87975240 - Gm43449 antisense antisense MGP_AJ_T0072075.1 MGP_AJ_G0029569.1 mouse_genomes_project 5 66352928 66582974 - MGP_AJ_P0072075 Kctd8 protein_coding protein_coding MGP_AJ_T0072076.1 MGP_AJ_G0029569.1 mouse_genomes_project 5 66537657 66582972 - MGP_AJ_P0072076 Kctd8 protein_coding protein_coding MGP_AJ_T0010685.1 MGP_AJ_G0008807.1 mouse_genomes_project 5 72442321 72442395 + Mir7025 miRNA miRNA MGP_AJ_T0014849.1 MGP_AJ_G0012944.1 mouse_genomes_project 5 3562968 3563534 - processed_pseudogene processed_pseudogene MGP_AJ_T0073743.1 MGP_AJ_G0029930.1 mouse_genomes_project 5 113492144 113498126 + MGP_AJ_P0073743 Srsf9 protein_coding protein_coding MGP_AJ_T0073744.1 MGP_AJ_G0029930.1 mouse_genomes_project 5 113492700 113498055 + Srsf9 protein_coding processed_transcript MGP_AJ_T0073745.1 MGP_AJ_G0029930.1 mouse_genomes_project 5 113493684 113497696 + Srsf9 protein_coding processed_transcript MGP_AJ_T0073746.1 MGP_AJ_G0029930.1 mouse_genomes_project 5 113495623 113498055 + MGP_AJ_P0073746 Srsf9 protein_coding protein_coding MGP_AJ_T0014899.1 MGP_AJ_G0012994.1 mouse_genomes_project 5 19864251 19864840 - processed_pseudogene processed_pseudogene MGP_AJ_T0018197.1 MGP_AJ_G0015592.1 mouse_genomes_project 5 137998248 138001366 - Gm15672 processed_transcript processed_transcript MGP_AJ_T0010710.1 MGP_AJ_G0008832.1 mouse_genomes_project 5 121093853 121093972 + Mir8115 miRNA miRNA MGP_AJ_T0071668.1 MGP_AJ_G0029505.1 mouse_genomes_project 5 42874346 43064293 - MGP_AJ_P0071668 Lcorl protein_coding protein_coding MGP_AJ_T0071669.1 MGP_AJ_G0029505.1 mouse_genomes_project 5 42874349 43064145 - MGP_AJ_P0071669 Lcorl protein_coding protein_coding MGP_AJ_T0071671.1 MGP_AJ_G0029505.1 mouse_genomes_project 5 42877625 43063241 - MGP_AJ_P0071671 Lcorl protein_coding protein_coding MGP_AJ_T0071672.1 MGP_AJ_G0029505.1 mouse_genomes_project 5 42878629 42900449 - Lcorl protein_coding processed_transcript MGP_AJ_T0071673.1 MGP_AJ_G0029505.1 mouse_genomes_project 5 42896811 42904724 - Lcorl protein_coding retained_intron MGP_AJ_T0071674.1 MGP_AJ_G0029505.1 mouse_genomes_project 5 42910603 43064175 - MGP_AJ_P0071674 Lcorl protein_coding protein_coding MGP_AJ_T0071675.1 MGP_AJ_G0029505.1 mouse_genomes_project 5 42924391 43064145 - MGP_AJ_P0071675 Lcorl protein_coding protein_coding MGP_AJ_T0071676.1 MGP_AJ_G0029505.1 mouse_genomes_project 5 42924412 43064159 - MGP_AJ_P0071676 Lcorl protein_coding nonsense_mediated_decay MGP_AJ_T0071677.1 MGP_AJ_G0029505.1 mouse_genomes_project 5 42983144 43064179 - Lcorl protein_coding processed_transcript MGP_AJ_T0071678.1 MGP_AJ_G0029505.1 mouse_genomes_project 5 42985081 43064293 - Lcorl protein_coding retained_intron MGP_AJ_T0071679.1 MGP_AJ_G0029505.1 mouse_genomes_project 5 42985251 43064166 - MGP_AJ_P0071679 Lcorl protein_coding protein_coding MGP_AJ_T0070679.1 MGP_AJ_G0029341.1 mouse_genomes_project 5 26444824 26470181 + MGP_AJ_P0070679 Nom1 protein_coding protein_coding MGP_AJ_T0070680.1 MGP_AJ_G0029341.1 mouse_genomes_project 5 26452353 26457388 + Nom1 protein_coding retained_intron MGP_AJ_T0008238.1 MGP_AJ_G0006712.1 mouse_genomes_project 5 98111043 98120564 - 5430416N02Rik lincRNA lincRNA MGP_AJ_T0008239.1 MGP_AJ_G0006712.1 mouse_genomes_project 5 98113851 98120545 - 5430416N02Rik lincRNA lincRNA MGP_AJ_T0008240.1 MGP_AJ_G0006712.1 mouse_genomes_project 5 98119764 98120404 - 5430416N02Rik lincRNA lincRNA MGP_AJ_T0008241.1 MGP_AJ_G0006712.1 mouse_genomes_project 5 98120022 98120544 - 5430416N02Rik lincRNA lincRNA MGP_AJ_T0072926.1 MGP_AJ_G0029757.1 mouse_genomes_project 5 98458688 98495898 - MGP_AJ_P0072926 Helq protein_coding protein_coding MGP_AJ_T0072927.1 MGP_AJ_G0029757.1 mouse_genomes_project 5 98458694 98461982 - Helq protein_coding retained_intron MGP_AJ_T0072928.1 MGP_AJ_G0029757.1 mouse_genomes_project 5 98458990 98495768 - MGP_AJ_P0072928 Helq protein_coding protein_coding MGP_AJ_T0072929.1 MGP_AJ_G0029757.1 mouse_genomes_project 5 98458999 98463357 - Helq protein_coding retained_intron MGP_AJ_T0072930.1 MGP_AJ_G0029757.1 mouse_genomes_project 5 98463280 98470579 - MGP_AJ_P0072930 Helq protein_coding nonsense_mediated_decay MGP_AJ_T0072931.1 MGP_AJ_G0029757.1 mouse_genomes_project 5 98468090 98470663 - Helq protein_coding retained_intron MGP_AJ_T0072932.1 MGP_AJ_G0029757.1 mouse_genomes_project 5 98474927 98479539 - Helq protein_coding retained_intron MGP_AJ_T0072933.1 MGP_AJ_G0029757.1 mouse_genomes_project 5 98479637 98490027 - Helq protein_coding processed_transcript MGP_AJ_T0072934.1 MGP_AJ_G0029757.1 mouse_genomes_project 5 98479718 98495877 - MGP_AJ_P0072934 Helq protein_coding nonsense_mediated_decay MGP_AJ_T0072935.1 MGP_AJ_G0029757.1 mouse_genomes_project 5 98489072 98490353 - Helq protein_coding retained_intron MGP_AJ_T0070851.1 MGP_AJ_G0029373.1 mouse_genomes_project 5 28080068 28104824 + MGP_AJ_P0070851 Cad protein_coding protein_coding MGP_AJ_T0070852.1 MGP_AJ_G0029373.1 mouse_genomes_project 5 28080099 28094077 + MGP_AJ_P0070852 Cad protein_coding protein_coding MGP_AJ_T0070853.1 MGP_AJ_G0029373.1 mouse_genomes_project 5 28080216 28104577 + MGP_AJ_P0070853 Cad protein_coding protein_coding MGP_AJ_T0070854.1 MGP_AJ_G0029373.1 mouse_genomes_project 5 28080216 28104577 + MGP_AJ_P0070854 Cad protein_coding protein_coding MGP_AJ_T0070855.1 MGP_AJ_G0029373.1 mouse_genomes_project 5 28080243 28104540 + MGP_AJ_P0070855 Cad protein_coding protein_coding MGP_AJ_T0070856.1 MGP_AJ_G0029373.1 mouse_genomes_project 5 28083958 28085249 + Cad protein_coding retained_intron MGP_AJ_T0070857.1 MGP_AJ_G0029373.1 mouse_genomes_project 5 28087078 28093282 + Cad protein_coding retained_intron MGP_AJ_T0070858.1 MGP_AJ_G0029373.1 mouse_genomes_project 5 28092608 28093494 + Cad protein_coding processed_transcript MGP_AJ_T0070859.1 MGP_AJ_G0029373.1 mouse_genomes_project 5 28096669 28098508 + Cad protein_coding processed_transcript MGP_AJ_T0070860.1 MGP_AJ_G0029373.1 mouse_genomes_project 5 28096782 28099019 + Cad protein_coding retained_intron MGP_AJ_T0070861.1 MGP_AJ_G0029373.1 mouse_genomes_project 5 28096868 28099296 + Cad protein_coding retained_intron MGP_AJ_T0070862.1 MGP_AJ_G0029373.1 mouse_genomes_project 5 28098622 28099895 + Cad protein_coding retained_intron MGP_AJ_T0070863.1 MGP_AJ_G0029373.1 mouse_genomes_project 5 28100431 28102343 + MGP_AJ_P0070863 Cad protein_coding protein_coding MGP_AJ_T0070864.1 MGP_AJ_G0029373.1 mouse_genomes_project 5 28102127 28102980 + Cad protein_coding retained_intron MGP_AJ_T0074195.1 MGP_AJ_G0030014.1 mouse_genomes_project 5 120779458 120787249 - MGP_AJ_P0074195 Fam216a protein_coding protein_coding MGP_AJ_T0001528.1 MGP_AJ_G0001446.1 mouse_genomes_project 5 40950010 40952538 + TEC TEC MGP_AJ_T0071258.1 MGP_AJ_G0029434.1 mouse_genomes_project 5 31732862 31793835 + MGP_AJ_P0071258 Add1 protein_coding protein_coding MGP_AJ_T0071259.1 MGP_AJ_G0029434.1 mouse_genomes_project 5 31732963 31767052 + MGP_AJ_P0071259 Add1 protein_coding protein_coding MGP_AJ_T0071260.1 MGP_AJ_G0029434.1 mouse_genomes_project 5 31732967 31767052 + MGP_AJ_P0071260 Add1 protein_coding protein_coding MGP_AJ_T0071261.1 MGP_AJ_G0029434.1 mouse_genomes_project 5 31733002 31762784 + Add1 protein_coding processed_transcript MGP_AJ_T0071262.1 MGP_AJ_G0029434.1 mouse_genomes_project 5 31733061 31793832 + MGP_AJ_P0071262 Add1 protein_coding protein_coding MGP_AJ_T0071263.1 MGP_AJ_G0029434.1 mouse_genomes_project 5 31733071 31793835 + MGP_AJ_P0071263 Add1 protein_coding protein_coding MGP_AJ_T0071264.1 MGP_AJ_G0029434.1 mouse_genomes_project 5 31733240 31793821 + MGP_AJ_P0071264 Add1 protein_coding protein_coding MGP_AJ_T0071265.1 MGP_AJ_G0029434.1 mouse_genomes_project 5 31757499 31760272 + Add1 protein_coding retained_intron MGP_AJ_T0071266.1 MGP_AJ_G0029434.1 mouse_genomes_project 5 31762500 31792343 + MGP_AJ_P0071266 Add1 protein_coding protein_coding MGP_AJ_T0071267.1 MGP_AJ_G0029434.1 mouse_genomes_project 5 31775737 31786846 + MGP_AJ_P0071267 Add1 protein_coding protein_coding MGP_AJ_T0071268.1 MGP_AJ_G0029434.1 mouse_genomes_project 5 31778152 31781978 + Add1 protein_coding retained_intron MGP_AJ_T0071269.1 MGP_AJ_G0029434.1 mouse_genomes_project 5 31778293 31792158 + MGP_AJ_P0071269 Add1 protein_coding protein_coding MGP_AJ_T0071270.1 MGP_AJ_G0029434.1 mouse_genomes_project 5 31780880 31793835 + MGP_AJ_P0071270 Add1 protein_coding protein_coding MGP_AJ_T0071271.1 MGP_AJ_G0029434.1 mouse_genomes_project 5 31781375 31792268 + Add1 protein_coding retained_intron MGP_AJ_T0071272.1 MGP_AJ_G0029434.1 mouse_genomes_project 5 31781497 31790270 + Add1 protein_coding retained_intron MGP_AJ_T0073681.1 MGP_AJ_G0029917.1 mouse_genomes_project 5 113075102 113089871 + MGP_AJ_P0073681 Oasl1 protein_coding protein_coding MGP_AJ_T0073682.1 MGP_AJ_G0029917.1 mouse_genomes_project 5 113075126 113089874 + MGP_AJ_P0073682 Oasl1 protein_coding protein_coding MGP_AJ_T0073683.1 MGP_AJ_G0029917.1 mouse_genomes_project 5 113075284 113087826 + Oasl1 protein_coding processed_transcript MGP_AJ_T0073684.1 MGP_AJ_G0029917.1 mouse_genomes_project 5 113075297 113087918 + Oasl1 protein_coding processed_transcript MGP_AJ_T0073685.1 MGP_AJ_G0029917.1 mouse_genomes_project 5 113081715 113085234 + Oasl1 protein_coding retained_intron MGP_AJ_T0073686.1 MGP_AJ_G0029917.1 mouse_genomes_project 5 113087875 113089646 + Oasl1 protein_coding processed_transcript MGP_AJ_T0075210.1 MGP_AJ_G0030187.1 mouse_genomes_project 5 135790391 135794013 - MGP_AJ_P0075210 Muc3a protein_coding protein_coding MGP_AJ_T0075211.1 MGP_AJ_G0030187.1 mouse_genomes_project 5 135790391 135793772 - MGP_AJ_P0075211 Muc3a protein_coding protein_coding MGP_AJ_T0001783.1 MGP_AJ_G0001698.1 mouse_genomes_project 5 115706075 115707031 + TEC TEC MGP_AJ_T0099035.1 MGP_AJ_G0037012.1 mouse_genomes_project 5 1968190 1973173 - Gm10484 sense_intronic sense_intronic MGP_AJ_T0004820.1 MGP_AJ_G0004154.1 mouse_genomes_project 5 121428081 121435901 - Gm2479 antisense antisense MGP_AJ_T0004821.1 MGP_AJ_G0004154.1 mouse_genomes_project 5 121428246 121433699 - Gm2479 antisense antisense MGP_AJ_T0072306.1 MGP_AJ_G0029612.1 mouse_genomes_project 5 73584070 73614030 - MGP_AJ_P0072306 Nmu protein_coding protein_coding MGP_AJ_T0070262.1 MGP_AJ_G0029255.1 mouse_genomes_project 5 6121058 6330564 + MGP_AJ_P0070262 9330182L06Rik protein_coding nonsense_mediated_decay MGP_AJ_T0070263.1 MGP_AJ_G0029255.1 mouse_genomes_project 5 6121067 6312628 + MGP_AJ_P0070263 9330182L06Rik protein_coding nonsense_mediated_decay MGP_AJ_T0070264.1 MGP_AJ_G0029255.1 mouse_genomes_project 5 6121070 6257317 + 9330182L06Rik protein_coding retained_intron MGP_AJ_T0070265.1 MGP_AJ_G0029255.1 mouse_genomes_project 5 6121072 6313012 + MGP_AJ_P0070265 9330182L06Rik protein_coding protein_coding MGP_AJ_T0070266.1 MGP_AJ_G0029255.1 mouse_genomes_project 5 6121072 6331545 + MGP_AJ_P0070266 9330182L06Rik protein_coding protein_coding MGP_AJ_T0070267.1 MGP_AJ_G0029255.1 mouse_genomes_project 5 6121089 6332653 + MGP_AJ_P0070267 9330182L06Rik protein_coding protein_coding MGP_AJ_T0070268.1 MGP_AJ_G0029255.1 mouse_genomes_project 5 6121115 6310515 + MGP_AJ_P0070268 9330182L06Rik protein_coding nonsense_mediated_decay MGP_AJ_T0070269.1 MGP_AJ_G0029255.1 mouse_genomes_project 5 6265094 6269661 + 9330182L06Rik protein_coding retained_intron MGP_AJ_T0015112.1 MGP_AJ_G0013207.1 mouse_genomes_project 5 106893235 106893609 + processed_pseudogene processed_pseudogene MGP_AJ_T0014961.1 MGP_AJ_G0013056.1 mouse_genomes_project 5 41519923 41521816 - processed_pseudogene processed_pseudogene MGP_AJ_T0014959.1 MGP_AJ_G0013054.1 mouse_genomes_project 5 41081009 41082771 + processed_pseudogene processed_pseudogene MGP_AJ_T0098848.1 MGP_AJ_G0036832.1 mouse_genomes_project 5 121982123 121982260 + Gm24682 scaRNA scaRNA MGP_AJ_T0008189.1 MGP_AJ_G0006672.1 mouse_genomes_project 5 73754683 73784284 + lincRNA lincRNA MGP_AJ_T0008190.1 MGP_AJ_G0006672.1 mouse_genomes_project 5 73755060 73784240 + lincRNA lincRNA MGP_AJ_T0075767.1 MGP_AJ_G0030303.1 mouse_genomes_project 5 142498571 142514414 + MGP_AJ_P0075767 protein_coding protein_coding MGP_AJ_T0075768.1 MGP_AJ_G0030303.1 mouse_genomes_project 5 142498571 142514414 + MGP_AJ_P0075768 protein_coding protein_coding MGP_AJ_T0075769.1 MGP_AJ_G0030303.1 mouse_genomes_project 5 142498573 142514420 + MGP_AJ_P0075769 protein_coding protein_coding MGP_AJ_T0075770.1 MGP_AJ_G0030303.1 mouse_genomes_project 5 142498573 142514420 + MGP_AJ_P0075770 protein_coding protein_coding MGP_AJ_T0075771.1 MGP_AJ_G0030303.1 mouse_genomes_project 5 142498611 142501800 + MGP_AJ_P0075771 protein_coding protein_coding MGP_AJ_T0075772.1 MGP_AJ_G0030303.1 mouse_genomes_project 5 142498626 142514416 + MGP_AJ_P0075772 protein_coding protein_coding MGP_AJ_T0075773.1 MGP_AJ_G0030303.1 mouse_genomes_project 5 142498626 142514414 + MGP_AJ_P0075773 protein_coding nonsense_mediated_decay MGP_AJ_T0075774.1 MGP_AJ_G0030303.1 mouse_genomes_project 5 142498627 142500741 + protein_coding retained_intron MGP_AJ_T0075775.1 MGP_AJ_G0030303.1 mouse_genomes_project 5 142498905 142501795 + protein_coding processed_transcript MGP_AJ_T0008170.1 MGP_AJ_G0006657.1 mouse_genomes_project 5 70513069 70519493 + Gm34411 lincRNA lincRNA MGP_AJ_T0015081.1 MGP_AJ_G0013176.1 mouse_genomes_project 5 97518458 97518916 - processed_pseudogene processed_pseudogene MGP_AJ_T0070878.1 MGP_AJ_G0029378.1 mouse_genomes_project 5 28167080 28182821 - MGP_AJ_P0070878 Mpv17 protein_coding protein_coding MGP_AJ_T0070879.1 MGP_AJ_G0029378.1 mouse_genomes_project 5 28167089 28182792 - MGP_AJ_P0070879 Mpv17 protein_coding protein_coding MGP_AJ_T0070880.1 MGP_AJ_G0029378.1 mouse_genomes_project 5 28167522 28182768 - MGP_AJ_P0070880 Mpv17 protein_coding protein_coding MGP_AJ_T0070881.1 MGP_AJ_G0029378.1 mouse_genomes_project 5 28167884 28182798 - MGP_AJ_P0070881 Mpv17 protein_coding protein_coding MGP_AJ_T0070882.1 MGP_AJ_G0029378.1 mouse_genomes_project 5 28167942 28182722 - MGP_AJ_P0070882 Mpv17 protein_coding protein_coding MGP_AJ_T0070883.1 MGP_AJ_G0029378.1 mouse_genomes_project 5 28167967 28182762 - MGP_AJ_P0070883 Mpv17 protein_coding protein_coding MGP_AJ_T0070884.1 MGP_AJ_G0029378.1 mouse_genomes_project 5 28168035 28173717 - MGP_AJ_P0070884 Mpv17 protein_coding protein_coding MGP_AJ_T0070885.1 MGP_AJ_G0029378.1 mouse_genomes_project 5 28168137 28173737 - Mpv17 protein_coding retained_intron MGP_AJ_T0070886.1 MGP_AJ_G0029378.1 mouse_genomes_project 5 28171536 28182788 - Mpv17 protein_coding retained_intron MGP_AJ_T0070887.1 MGP_AJ_G0029378.1 mouse_genomes_project 5 28171736 28182791 - MGP_AJ_P0070887 Mpv17 protein_coding protein_coding MGP_AJ_T0070889.1 MGP_AJ_G0029378.1 mouse_genomes_project 5 28172625 28182788 - Mpv17 protein_coding retained_intron MGP_AJ_T0070890.1 MGP_AJ_G0029378.1 mouse_genomes_project 5 28172952 28182312 - Mpv17 protein_coding retained_intron MGP_AJ_T0073953.1 MGP_AJ_G0029969.1 mouse_genomes_project 5 118755433 118779232 + MGP_AJ_P0073953 Slc8b1 protein_coding protein_coding MGP_AJ_T0073954.1 MGP_AJ_G0029969.1 mouse_genomes_project 5 118755500 118779227 + MGP_AJ_P0073954 Slc8b1 protein_coding protein_coding MGP_AJ_T0073955.1 MGP_AJ_G0029969.1 mouse_genomes_project 5 118755517 118779228 + MGP_AJ_P0073955 Slc8b1 protein_coding protein_coding MGP_AJ_T0073956.1 MGP_AJ_G0029969.1 mouse_genomes_project 5 118755535 118757454 + MGP_AJ_P0073956 Slc8b1 protein_coding protein_coding MGP_AJ_T0073957.1 MGP_AJ_G0029969.1 mouse_genomes_project 5 118757133 118764088 + MGP_AJ_P0073957 Slc8b1 protein_coding protein_coding MGP_AJ_T0073958.1 MGP_AJ_G0029969.1 mouse_genomes_project 5 118757408 118778265 + MGP_AJ_P0073958 Slc8b1 protein_coding protein_coding MGP_AJ_T0073959.1 MGP_AJ_G0029969.1 mouse_genomes_project 5 118765115 118766557 + Slc8b1 protein_coding retained_intron MGP_AJ_T0073702.1 MGP_AJ_G0029922.1 mouse_genomes_project 5 113268692 113277781 - Acads protein_coding retained_intron MGP_AJ_T0073703.1 MGP_AJ_G0029922.1 mouse_genomes_project 5 113268692 113277840 - MGP_AJ_P0073703 Acads protein_coding protein_coding MGP_AJ_T0073704.1 MGP_AJ_G0029922.1 mouse_genomes_project 5 113270389 113277804 - Acads protein_coding processed_transcript MGP_AJ_T0073705.1 MGP_AJ_G0029922.1 mouse_genomes_project 5 113271177 113277769 - Acads protein_coding retained_intron MGP_AJ_T0008049.1 MGP_AJ_G0006571.1 mouse_genomes_project 5 8943868 8951892 + Gm29066 lincRNA lincRNA MGP_AJ_T0001568.1 MGP_AJ_G0001485.1 mouse_genomes_project 5 46140983 46142291 - TEC TEC MGP_AJ_T0018185.1 MGP_AJ_G0015590.1 mouse_genomes_project 5 123075164 123078542 + Tctn2 processed_transcript retained_intron MGP_AJ_T0018186.1 MGP_AJ_G0015590.1 mouse_genomes_project 5 123075164 123104924 + Tctn2 processed_transcript processed_transcript MGP_AJ_T0018187.1 MGP_AJ_G0015590.1 mouse_genomes_project 5 123075199 123082140 + Tctn2 processed_transcript retained_intron MGP_AJ_T0018188.1 MGP_AJ_G0015590.1 mouse_genomes_project 5 123075202 123079790 + Tctn2 processed_transcript retained_intron MGP_AJ_T0018189.1 MGP_AJ_G0015590.1 mouse_genomes_project 5 123075207 123095738 + Tctn2 processed_transcript retained_intron MGP_AJ_T0018190.1 MGP_AJ_G0015590.1 mouse_genomes_project 5 123075212 123104644 + Tctn2 processed_transcript processed_transcript MGP_AJ_T0075496.1 MGP_AJ_G0030245.1 mouse_genomes_project 5 138000885 138037891 + MGP_AJ_P0075496 Dnaaf5 protein_coding protein_coding MGP_AJ_T0075497.1 MGP_AJ_G0030245.1 mouse_genomes_project 5 138017792 138029381 + Dnaaf5 protein_coding processed_transcript MGP_AJ_T0008429.1 MGP_AJ_G0006833.1 mouse_genomes_project 5 136254554 136260152 - Gm15498 lincRNA lincRNA MGP_AJ_T0070069.1 MGP_AJ_G0029227.1 mouse_genomes_project 5 386346 493517 - MGP_AJ_P0070069 Ankib1 protein_coding protein_coding MGP_AJ_T0070070.1 MGP_AJ_G0029227.1 mouse_genomes_project 5 389815 398443 - Ankib1 protein_coding retained_intron MGP_AJ_T0070071.1 MGP_AJ_G0029227.1 mouse_genomes_project 5 390226 485969 - MGP_AJ_P0070071 Ankib1 protein_coding protein_coding MGP_AJ_T0070072.1 MGP_AJ_G0029227.1 mouse_genomes_project 5 391147 391576 - Ankib1 protein_coding retained_intron MGP_AJ_T0070073.1 MGP_AJ_G0029227.1 mouse_genomes_project 5 396897 398180 - Ankib1 protein_coding retained_intron MGP_AJ_T0070074.1 MGP_AJ_G0029227.1 mouse_genomes_project 5 430030 493379 - Ankib1 protein_coding retained_intron MGP_AJ_T0014917.1 MGP_AJ_G0013012.1 mouse_genomes_project 5 23863121 23863378 - processed_pseudogene processed_pseudogene MGP_AJ_T0004724.1 MGP_AJ_G0004085.1 mouse_genomes_project 5 74200821 74201299 + antisense antisense MGP_AJ_T0004725.1 MGP_AJ_G0004085.1 mouse_genomes_project 5 74201061 74211200 + antisense antisense MGP_AJ_T0004726.1 MGP_AJ_G0004086.1 mouse_genomes_project 5 74357296 74365074 + Hopxos antisense antisense MGP_AJ_T0074492.1 MGP_AJ_G0030058.1 mouse_genomes_project 5 122816802 122822959 - MGP_AJ_P0074492 protein_coding protein_coding MGP_AJ_T0074493.1 MGP_AJ_G0030058.1 mouse_genomes_project 5 122816941 122821571 - MGP_AJ_P0074493 protein_coding protein_coding MGP_AJ_T0074494.1 MGP_AJ_G0030058.1 mouse_genomes_project 5 122816960 122823538 - MGP_AJ_P0074494 protein_coding protein_coding MGP_AJ_T0074495.1 MGP_AJ_G0030058.1 mouse_genomes_project 5 122817455 122834997 - MGP_AJ_P0074495 protein_coding protein_coding MGP_AJ_T0001746.1 MGP_AJ_G0001661.1 mouse_genomes_project 5 104983473 104985640 - TEC TEC MGP_AJ_T0001445.1 MGP_AJ_G0001366.1 mouse_genomes_project 5 6450596 6453331 - TEC TEC MGP_AJ_T0101817.1 MGP_AJ_G0039722.1 mouse_genomes_project 5 47841046 47844420 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0074711.1 MGP_AJ_G0030098.1 mouse_genomes_project 5 128255252 128269848 - MGP_AJ_P0074711 Psph protein_coding protein_coding MGP_AJ_T0074712.1 MGP_AJ_G0030098.1 mouse_genomes_project 5 128258935 128260837 - Psph protein_coding processed_transcript MGP_AJ_T0074713.1 MGP_AJ_G0030098.1 mouse_genomes_project 5 128259011 128271637 - MGP_AJ_P0074713 Psph protein_coding protein_coding MGP_AJ_T0074714.1 MGP_AJ_G0030098.1 mouse_genomes_project 5 128260381 128279663 - MGP_AJ_P0074714 Psph protein_coding protein_coding MGP_AJ_T0074715.1 MGP_AJ_G0030098.1 mouse_genomes_project 5 128261101 128271630 - Psph protein_coding retained_intron MGP_AJ_T0074716.1 MGP_AJ_G0030098.1 mouse_genomes_project 5 128269271 128279761 - Psph protein_coding retained_intron MGP_AJ_T0074717.1 MGP_AJ_G0030098.1 mouse_genomes_project 5 128271804 128279716 - Psph protein_coding processed_transcript MGP_AJ_T0075396.1 MGP_AJ_G0030225.1 mouse_genomes_project 5 136778961 136786197 - MGP_AJ_P0075396 Mcm7 protein_coding protein_coding MGP_AJ_T0075397.1 MGP_AJ_G0030225.1 mouse_genomes_project 5 136778969 136780087 - Mcm7 protein_coding retained_intron MGP_AJ_T0075398.1 MGP_AJ_G0030225.1 mouse_genomes_project 5 136778969 136786189 - MGP_AJ_P0075398 Mcm7 protein_coding protein_coding MGP_AJ_T0075399.1 MGP_AJ_G0030225.1 mouse_genomes_project 5 136782430 136784752 - Mcm7 protein_coding retained_intron MGP_AJ_T0075400.1 MGP_AJ_G0030225.1 mouse_genomes_project 5 136782826 136785637 - MGP_AJ_P0075400 Mcm7 protein_coding protein_coding MGP_AJ_T0075401.1 MGP_AJ_G0030225.1 mouse_genomes_project 5 136783079 136784014 - Mcm7 protein_coding retained_intron MGP_AJ_T0075402.1 MGP_AJ_G0030225.1 mouse_genomes_project 5 136783248 136785388 - MGP_AJ_P0075402 Mcm7 protein_coding protein_coding MGP_AJ_T0075403.1 MGP_AJ_G0030225.1 mouse_genomes_project 5 136783249 136786186 - MGP_AJ_P0075403 Mcm7 protein_coding protein_coding MGP_AJ_T0075404.1 MGP_AJ_G0030225.1 mouse_genomes_project 5 136783579 136785032 - MGP_AJ_P0075404 Mcm7 protein_coding protein_coding MGP_AJ_T0015178.1 MGP_AJ_G0013273.1 mouse_genomes_project 5 138119730 138121561 + processed_pseudogene processed_pseudogene MGP_AJ_T0004884.1 MGP_AJ_G0004197.1 mouse_genomes_project 5 146396486 146439799 - 2210019I11Rik antisense antisense MGP_AJ_T0004885.1 MGP_AJ_G0004197.1 mouse_genomes_project 5 146398601 146439780 - 2210019I11Rik antisense antisense MGP_AJ_T0004886.1 MGP_AJ_G0004197.1 mouse_genomes_project 5 146406684 146439273 - 2210019I11Rik antisense antisense MGP_AJ_T0001621.1 MGP_AJ_G0001538.1 mouse_genomes_project 5 57165335 57167961 - TEC TEC MGP_AJ_T0074689.1 MGP_AJ_G0030093.1 mouse_genomes_project 5 128069416 128096314 + MGP_AJ_P0074689 Mmp17 protein_coding protein_coding MGP_AJ_T0074690.1 MGP_AJ_G0030093.1 mouse_genomes_project 5 128081835 128087692 + Mmp17 protein_coding retained_intron MGP_AJ_T0008164.1 MGP_AJ_G0006652.1 mouse_genomes_project 5 61831881 61833585 + Gm42565 lincRNA lincRNA MGP_AJ_T0001692.1 MGP_AJ_G0001607.1 mouse_genomes_project 5 71305186 71310393 - TEC TEC MGP_AJ_T0015117.1 MGP_AJ_G0013212.1 mouse_genomes_project 5 107512632 107514647 - processed_pseudogene processed_pseudogene MGP_AJ_T0001734.1 MGP_AJ_G0001649.1 mouse_genomes_project 5 99769933 99770970 - TEC TEC MGP_AJ_T0072230.1 MGP_AJ_G0029599.1 mouse_genomes_project 5 71453472 71457680 + MGP_AJ_P0072230 Rasl11b protein_coding protein_coding MGP_AJ_T0072231.1 MGP_AJ_G0029599.1 mouse_genomes_project 5 71453631 71454477 + Rasl11b protein_coding retained_intron MGP_AJ_T0072232.1 MGP_AJ_G0029599.1 mouse_genomes_project 5 71456089 71457671 + Rasl11b protein_coding retained_intron MGP_AJ_T0010702.1 MGP_AJ_G0008824.1 mouse_genomes_project 5 111463985 111464041 - Mir7230 miRNA miRNA MGP_AJ_T0070608.1 MGP_AJ_G0029326.1 mouse_genomes_project 5 22206918 22207224 - MGP_AJ_P0070608 E130116L18Rik protein_coding protein_coding MGP_AJ_T0008075.1 MGP_AJ_G0006589.1 mouse_genomes_project 5 22641683 22642033 - Gm10062 lincRNA lincRNA MGP_AJ_T0008077.1 MGP_AJ_G0006589.1 mouse_genomes_project 5 22641690 22643160 - Gm10062 lincRNA lincRNA MGP_AJ_T0008107.1 MGP_AJ_G0006608.1 mouse_genomes_project 5 34375384 34386752 + lincRNA lincRNA MGP_AJ_T0008108.1 MGP_AJ_G0006608.1 mouse_genomes_project 5 34378348 34385449 + lincRNA lincRNA MGP_AJ_T0072536.1 MGP_AJ_G0029659.1 mouse_genomes_project 5 85149222 85165549 + MGP_AJ_P0072536 Csn1s2b protein_coding protein_coding MGP_AJ_T0072537.1 MGP_AJ_G0029659.1 mouse_genomes_project 5 85149263 85165540 + MGP_AJ_P0072537 Csn1s2b protein_coding protein_coding MGP_AJ_T0072538.1 MGP_AJ_G0029659.1 mouse_genomes_project 5 85149264 85159548 + MGP_AJ_P0072538 Csn1s2b protein_coding protein_coding MGP_AJ_T0072539.1 MGP_AJ_G0029659.1 mouse_genomes_project 5 85149267 85165444 + MGP_AJ_P0072539 Csn1s2b protein_coding protein_coding MGP_AJ_T0072540.1 MGP_AJ_G0029659.1 mouse_genomes_project 5 85152495 85154558 + Csn1s2b protein_coding retained_intron MGP_AJ_T0010700.1 MGP_AJ_G0008822.1 mouse_genomes_project 5 109099428 109099537 + Mir701 miRNA miRNA MGP_AJ_T0075423.1 MGP_AJ_G0030229.1 mouse_genomes_project 5 136808866 136810174 + MGP_AJ_P0075423 Mblac1 protein_coding protein_coding MGP_AJ_T0001799.1 MGP_AJ_G0001714.1 mouse_genomes_project 5 119743777 119745643 + TEC TEC MGP_AJ_T0010703.1 MGP_AJ_G0008825.1 mouse_genomes_project 5 112542360 112542432 + Mir7027 miRNA miRNA MGP_AJ_T0101816.1 MGP_AJ_G0039721.1 mouse_genomes_project 5 42978693 42979572 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0014853.1 MGP_AJ_G0012948.1 mouse_genomes_project 5 4724055 4724347 + processed_pseudogene processed_pseudogene MGP_AJ_T0070348.1 MGP_AJ_G0029276.1 mouse_genomes_project 5 17824095 17828775 + MGP_AJ_P0070348 Tmem60 protein_coding protein_coding MGP_AJ_T0070349.1 MGP_AJ_G0029276.1 mouse_genomes_project 5 17824411 17826589 + Tmem60 protein_coding processed_transcript MGP_AJ_T0076056.1 MGP_AJ_G0030369.1 mouse_genomes_project 5 147667778 147715780 - MGP_AJ_P0076056 Ubl3 protein_coding protein_coding MGP_AJ_T0076057.1 MGP_AJ_G0030369.1 mouse_genomes_project 5 147668272 147715907 - MGP_AJ_P0076057 Ubl3 protein_coding protein_coding MGP_AJ_T0076058.1 MGP_AJ_G0030369.1 mouse_genomes_project 5 147668285 147715907 - MGP_AJ_P0076058 Ubl3 protein_coding protein_coding MGP_AJ_T0076059.1 MGP_AJ_G0030369.1 mouse_genomes_project 5 147669124 147700695 - Ubl3 protein_coding processed_transcript MGP_AJ_T0076060.1 MGP_AJ_G0030369.1 mouse_genomes_project 5 147672408 147714768 - Ubl3 protein_coding processed_transcript MGP_AJ_T0076061.1 MGP_AJ_G0030369.1 mouse_genomes_project 5 147672418 147714760 - Ubl3 protein_coding processed_transcript MGP_AJ_T0076062.1 MGP_AJ_G0030369.1 mouse_genomes_project 5 147709679 147715816 - Ubl3 protein_coding retained_intron MGP_AJ_T0076194.1 MGP_AJ_G0030391.1 mouse_genomes_project 5 150877602 150886089 - MGP_AJ_P0076194 Rfc3 protein_coding protein_coding MGP_AJ_T0076195.1 MGP_AJ_G0030391.1 mouse_genomes_project 5 150877665 150878978 - Rfc3 protein_coding retained_intron MGP_AJ_T0076196.1 MGP_AJ_G0030391.1 mouse_genomes_project 5 150877667 150879609 - Rfc3 protein_coding retained_intron MGP_AJ_T0076197.1 MGP_AJ_G0030391.1 mouse_genomes_project 5 150877670 150886049 - Rfc3 protein_coding retained_intron MGP_AJ_T0076198.1 MGP_AJ_G0030391.1 mouse_genomes_project 5 150879262 150886055 - Rfc3 protein_coding retained_intron MGP_AJ_T0076199.1 MGP_AJ_G0030391.1 mouse_genomes_project 5 150881813 150886042 - Rfc3 protein_coding retained_intron MGP_AJ_T0076200.1 MGP_AJ_G0030391.1 mouse_genomes_project 5 150884413 150886074 - Rfc3 protein_coding retained_intron MGP_AJ_T0001580.1 MGP_AJ_G0001497.1 mouse_genomes_project 5 46387490 46389976 - TEC TEC MGP_AJ_T0008387.1 MGP_AJ_G0006805.1 mouse_genomes_project 5 124953560 124954686 - Gm42592 lincRNA lincRNA MGP_AJ_T0004848.1 MGP_AJ_G0004173.1 mouse_genomes_project 5 133066412 133073516 + Gm42884 antisense antisense MGP_AJ_T0004849.1 MGP_AJ_G0004173.1 mouse_genomes_project 5 133070810 133073716 + Gm42884 antisense antisense MGP_AJ_T0075071.1 MGP_AJ_G0030162.1 mouse_genomes_project 5 134521204 134535643 - MGP_AJ_P0075071 Ssc4d protein_coding protein_coding MGP_AJ_T0075072.1 MGP_AJ_G0030162.1 mouse_genomes_project 5 134521216 134535609 - MGP_AJ_P0075072 Ssc4d protein_coding protein_coding MGP_AJ_T0075073.1 MGP_AJ_G0030162.1 mouse_genomes_project 5 134521217 134523322 - MGP_AJ_P0075073 Ssc4d protein_coding protein_coding MGP_AJ_T0075074.1 MGP_AJ_G0030162.1 mouse_genomes_project 5 134521820 134523270 - MGP_AJ_P0075074 Ssc4d protein_coding protein_coding MGP_AJ_T0075075.1 MGP_AJ_G0030162.1 mouse_genomes_project 5 134524210 134526870 - MGP_AJ_P0075075 Ssc4d protein_coding protein_coding MGP_AJ_T0075076.1 MGP_AJ_G0030162.1 mouse_genomes_project 5 134524420 134528944 - MGP_AJ_P0075076 Ssc4d protein_coding protein_coding MGP_AJ_T0075077.1 MGP_AJ_G0030162.1 mouse_genomes_project 5 134527134 134535552 - MGP_AJ_P0075077 Ssc4d protein_coding protein_coding MGP_AJ_T0008491.1 MGP_AJ_G0006880.1 mouse_genomes_project 5 150071231 150115054 + Gm43299 lincRNA lincRNA MGP_AJ_T0015149.1 MGP_AJ_G0013244.1 mouse_genomes_project 5 121498942 121499400 + processed_pseudogene processed_pseudogene MGP_AJ_T0008360.1 MGP_AJ_G0006792.1 mouse_genomes_project 5 121470263 121686930 - lincRNA lincRNA MGP_AJ_T0072825.1 MGP_AJ_G0029734.1 mouse_genomes_project 5 94733947 94763245 - MGP_AJ_P0072825 Paqr3 protein_coding protein_coding MGP_AJ_T0072826.1 MGP_AJ_G0029734.1 mouse_genomes_project 5 94738671 94763223 - MGP_AJ_P0072826 Paqr3 protein_coding protein_coding MGP_AJ_T0072827.1 MGP_AJ_G0029734.1 mouse_genomes_project 5 94747620 94749458 - Paqr3 protein_coding retained_intron MGP_AJ_T0072828.1 MGP_AJ_G0029734.1 mouse_genomes_project 5 94749210 94763094 - MGP_AJ_P0072828 Paqr3 protein_coding protein_coding MGP_AJ_T0072829.1 MGP_AJ_G0029734.1 mouse_genomes_project 5 94753821 94763245 - MGP_AJ_P0072829 Paqr3 protein_coding protein_coding MGP_AJ_T0072830.1 MGP_AJ_G0029734.1 mouse_genomes_project 5 94756260 94763233 - Paqr3 protein_coding retained_intron MGP_AJ_T0101296.1 MGP_AJ_G0039262.1 mouse_genomes_project 5 81003583 81003711 - Gm24792 snoRNA snoRNA MGP_AJ_T0075635.1 MGP_AJ_G0030274.1 mouse_genomes_project 5 139590063 139604427 + MGP_AJ_P0075635 Brat1 protein_coding protein_coding MGP_AJ_T0075636.1 MGP_AJ_G0030274.1 mouse_genomes_project 5 139590075 139604378 + MGP_AJ_P0075636 Brat1 protein_coding protein_coding MGP_AJ_T0075637.1 MGP_AJ_G0030274.1 mouse_genomes_project 5 139590075 139604221 + MGP_AJ_P0075637 Brat1 protein_coding nonsense_mediated_decay MGP_AJ_T0075638.1 MGP_AJ_G0030274.1 mouse_genomes_project 5 139590102 139600983 + Brat1 protein_coding retained_intron MGP_AJ_T0075639.1 MGP_AJ_G0030274.1 mouse_genomes_project 5 139590104 139600707 + Brat1 protein_coding retained_intron MGP_AJ_T0075640.1 MGP_AJ_G0030274.1 mouse_genomes_project 5 139590118 139604427 + MGP_AJ_P0075640 Brat1 protein_coding protein_coding MGP_AJ_T0010711.1 MGP_AJ_G0008833.1 mouse_genomes_project 5 121986493 121986552 - Mir7647 miRNA miRNA MGP_AJ_T0070585.1 MGP_AJ_G0029320.1 mouse_genomes_project 5 21692006 21711167 - MGP_AJ_P0070585 Wdr86 protein_coding protein_coding MGP_AJ_T0070586.1 MGP_AJ_G0029320.1 mouse_genomes_project 5 21692533 21711120 - Wdr86 protein_coding retained_intron MGP_AJ_T0070587.1 MGP_AJ_G0029320.1 mouse_genomes_project 5 21692537 21693646 - Wdr86 protein_coding retained_intron MGP_AJ_T0070588.1 MGP_AJ_G0029320.1 mouse_genomes_project 5 21692906 21695850 - MGP_AJ_P0070588 Wdr86 protein_coding protein_coding MGP_AJ_T0001763.1 MGP_AJ_G0001678.1 mouse_genomes_project 5 111239771 111241667 - TEC TEC MGP_AJ_T0071867.1 MGP_AJ_G0029537.1 mouse_genomes_project 5 62164742 62172770 - MGP_AJ_P0071867 protein_coding protein_coding MGP_AJ_T0071868.1 MGP_AJ_G0029537.1 mouse_genomes_project 5 62167945 62172820 - MGP_AJ_P0071868 protein_coding protein_coding MGP_AJ_T0008120.1 MGP_AJ_G0006616.1 mouse_genomes_project 5 36656220 36797662 - 4930513D17Rik lincRNA lincRNA MGP_AJ_T0008121.1 MGP_AJ_G0006616.1 mouse_genomes_project 5 36657036 36797705 - 4930513D17Rik lincRNA lincRNA MGP_AJ_T0008122.1 MGP_AJ_G0006616.1 mouse_genomes_project 5 36670973 36797660 - 4930513D17Rik lincRNA lincRNA MGP_AJ_T0001548.1 MGP_AJ_G0001466.1 mouse_genomes_project 5 42879917 42881947 + TEC TEC MGP_AJ_T0004703.1 MGP_AJ_G0004067.1 mouse_genomes_project 5 62813964 62817655 - Gm42726 antisense antisense MGP_AJ_T0070934.1 MGP_AJ_G0029384.1 mouse_genomes_project 5 28231849 28250048 - MGP_AJ_P0070934 Ppm1g protein_coding protein_coding MGP_AJ_T0070935.1 MGP_AJ_G0029384.1 mouse_genomes_project 5 28231853 28250170 - MGP_AJ_P0070935 Ppm1g protein_coding protein_coding MGP_AJ_T0070936.1 MGP_AJ_G0029384.1 mouse_genomes_project 5 28232287 28234269 - Ppm1g protein_coding retained_intron MGP_AJ_T0070938.1 MGP_AJ_G0029384.1 mouse_genomes_project 5 28234277 28236851 - MGP_AJ_P0070938 Ppm1g protein_coding protein_coding MGP_AJ_T0070939.1 MGP_AJ_G0029384.1 mouse_genomes_project 5 28248204 28250048 - Ppm1g protein_coding retained_intron MGP_AJ_T0008442.1 MGP_AJ_G0006845.1 mouse_genomes_project 5 142713906 142721426 + D130017N08Rik lincRNA lincRNA MGP_AJ_T0008443.1 MGP_AJ_G0006845.1 mouse_genomes_project 5 142715413 142722766 + D130017N08Rik lincRNA lincRNA MGP_AJ_T0008445.1 MGP_AJ_G0006845.1 mouse_genomes_project 5 142721926 142724206 + D130017N08Rik lincRNA lincRNA MGP_AJ_T0001866.1 MGP_AJ_G0001780.1 mouse_genomes_project 5 130912677 130913952 - TEC TEC MGP_AJ_T0099061.1 MGP_AJ_G0037037.1 mouse_genomes_project 5 141985131 141985713 - Gm43378 sense_intronic sense_intronic MGP_AJ_T0074930.1 MGP_AJ_G0030133.1 mouse_genomes_project 5 133436970 133438248 - MGP_AJ_P0074930 Cldn13 protein_coding protein_coding MGP_AJ_T0072172.1 MGP_AJ_G0029590.1 mouse_genomes_project 5 70268763 70319459 - Fryl protein_coding retained_intron MGP_AJ_T0072173.1 MGP_AJ_G0029590.1 mouse_genomes_project 5 70268763 70396931 - MGP_AJ_P0072173 Fryl protein_coding protein_coding MGP_AJ_T0072174.1 MGP_AJ_G0029590.1 mouse_genomes_project 5 70269507 70400910 - MGP_AJ_P0072174 Fryl protein_coding protein_coding MGP_AJ_T0072175.1 MGP_AJ_G0029590.1 mouse_genomes_project 5 70288596 70335655 - MGP_AJ_P0072175 Fryl protein_coding protein_coding MGP_AJ_T0072176.1 MGP_AJ_G0029590.1 mouse_genomes_project 5 70294611 70297605 - Fryl protein_coding retained_intron MGP_AJ_T0072177.1 MGP_AJ_G0029590.1 mouse_genomes_project 5 70294714 70330524 - Fryl protein_coding processed_transcript MGP_AJ_T0072178.1 MGP_AJ_G0029590.1 mouse_genomes_project 5 70300969 70301900 - Fryl protein_coding retained_intron MGP_AJ_T0072179.1 MGP_AJ_G0029590.1 mouse_genomes_project 5 70312119 70312999 - Fryl protein_coding retained_intron MGP_AJ_T0072180.1 MGP_AJ_G0029590.1 mouse_genomes_project 5 70313189 70319181 - MGP_AJ_P0072180 Fryl protein_coding protein_coding MGP_AJ_T0072181.1 MGP_AJ_G0029590.1 mouse_genomes_project 5 70320927 70324042 - Fryl protein_coding retained_intron MGP_AJ_T0072182.1 MGP_AJ_G0029590.1 mouse_genomes_project 5 70345857 70346851 - MGP_AJ_P0072182 Fryl protein_coding protein_coding MGP_AJ_T0072183.1 MGP_AJ_G0029590.1 mouse_genomes_project 5 70347985 70416915 - Fryl protein_coding retained_intron MGP_AJ_T0072184.1 MGP_AJ_G0029590.1 mouse_genomes_project 5 70356975 70368269 - MGP_AJ_P0072184 Fryl protein_coding protein_coding MGP_AJ_T0072185.1 MGP_AJ_G0029590.1 mouse_genomes_project 5 70366728 70370679 - MGP_AJ_P0072185 Fryl protein_coding protein_coding MGP_AJ_T0072186.1 MGP_AJ_G0029590.1 mouse_genomes_project 5 70367660 70506083 - Fryl protein_coding retained_intron MGP_AJ_T0072187.1 MGP_AJ_G0029590.1 mouse_genomes_project 5 70396832 70440456 - MGP_AJ_P0072187 Fryl protein_coding protein_coding MGP_AJ_T0072188.1 MGP_AJ_G0029590.1 mouse_genomes_project 5 70442380 70506247 - Fryl protein_coding retained_intron MGP_AJ_T0099991.1 MGP_AJ_G0037957.1 mouse_genomes_project 5 19470800 19470907 - Gm22887 snRNA snRNA MGP_AJ_T0018119.1 MGP_AJ_G0015566.1 mouse_genomes_project 5 1930948 1933592 - Gm43623 processed_transcript processed_transcript MGP_AJ_T0001752.1 MGP_AJ_G0001667.1 mouse_genomes_project 5 106464750 106466860 - TEC TEC MGP_AJ_T0015083.1 MGP_AJ_G0013178.1 mouse_genomes_project 5 98289979 98290332 - processed_pseudogene processed_pseudogene MGP_AJ_T0001802.1 MGP_AJ_G0001717.1 mouse_genomes_project 5 120124760 120127860 + TEC TEC MGP_AJ_T0072664.1 MGP_AJ_G0029703.1 mouse_genomes_project 5 88821848 88868761 - MGP_AJ_P0072664 Btc protein_coding protein_coding MGP_AJ_T0072665.1 MGP_AJ_G0029703.1 mouse_genomes_project 5 88821976 88868589 - Btc protein_coding retained_intron MGP_AJ_T0072666.1 MGP_AJ_G0029703.1 mouse_genomes_project 5 88823506 88868627 - MGP_AJ_P0072666 Btc protein_coding nonsense_mediated_decay MGP_AJ_T0072667.1 MGP_AJ_G0029703.1 mouse_genomes_project 5 88830377 88841608 - Btc protein_coding processed_transcript MGP_AJ_T0075997.1 MGP_AJ_G0030360.1 mouse_genomes_project 5 146468995 146475974 - MGP_AJ_P0075997 Cdx2 protein_coding protein_coding MGP_AJ_T0072218.1 MGP_AJ_G0029596.1 mouse_genomes_project 5 70882680 70897685 - MGP_AJ_P0072218 Sgcb protein_coding protein_coding MGP_AJ_T0072219.1 MGP_AJ_G0029596.1 mouse_genomes_project 5 70893899 70894362 - Sgcb protein_coding retained_intron MGP_AJ_T0014869.1 MGP_AJ_G0012964.1 mouse_genomes_project 5 13274664 13275448 - processed_pseudogene processed_pseudogene MGP_AJ_T0008152.1 MGP_AJ_G0006643.1 mouse_genomes_project 5 58180752 58185463 - 1700014F14Rik lincRNA lincRNA MGP_AJ_T0075780.1 MGP_AJ_G0030305.1 mouse_genomes_project 5 142661283 142684106 - MGP_AJ_P0075780 Usp42 protein_coding protein_coding MGP_AJ_T0075781.1 MGP_AJ_G0030305.1 mouse_genomes_project 5 142664710 142666571 - Usp42 protein_coding processed_transcript MGP_AJ_T0075782.1 MGP_AJ_G0030305.1 mouse_genomes_project 5 142664725 142668145 - Usp42 protein_coding retained_intron MGP_AJ_T0075783.1 MGP_AJ_G0030305.1 mouse_genomes_project 5 142667361 142678970 - Usp42 protein_coding retained_intron MGP_AJ_T0075784.1 MGP_AJ_G0030305.1 mouse_genomes_project 5 142672598 142673891 - Usp42 protein_coding retained_intron MGP_AJ_T0015195.1 MGP_AJ_G0013290.1 mouse_genomes_project 5 143971925 143972373 - processed_pseudogene processed_pseudogene MGP_AJ_T0070835.1 MGP_AJ_G0029370.1 mouse_genomes_project 5 27991442 27999843 + MGP_AJ_P0070835 Tcf23 protein_coding protein_coding MGP_AJ_T0001663.1 MGP_AJ_G0001579.1 mouse_genomes_project 5 64386212 64388971 + TEC TEC MGP_AJ_T0001575.1 MGP_AJ_G0001492.1 mouse_genomes_project 5 46236305 46236948 - TEC TEC MGP_AJ_T0014956.1 MGP_AJ_G0013051.1 mouse_genomes_project 5 39084126 39085018 - processed_pseudogene processed_pseudogene MGP_AJ_T0073724.1 MGP_AJ_G0029927.1 mouse_genomes_project 5 113408366 113438087 - MGP_AJ_P0073724 Rnf10 protein_coding protein_coding MGP_AJ_T0073725.1 MGP_AJ_G0029927.1 mouse_genomes_project 5 113408724 113438081 - MGP_AJ_P0073725 Rnf10 protein_coding protein_coding MGP_AJ_T0073726.1 MGP_AJ_G0029927.1 mouse_genomes_project 5 113408724 113438084 - MGP_AJ_P0073726 Rnf10 protein_coding protein_coding MGP_AJ_T0073727.1 MGP_AJ_G0029927.1 mouse_genomes_project 5 113408729 113409657 - Rnf10 protein_coding retained_intron MGP_AJ_T0073728.1 MGP_AJ_G0029927.1 mouse_genomes_project 5 113408733 113437496 - MGP_AJ_P0073728 Rnf10 protein_coding nonsense_mediated_decay MGP_AJ_T0073729.1 MGP_AJ_G0029927.1 mouse_genomes_project 5 113410659 113413044 - Rnf10 protein_coding retained_intron MGP_AJ_T0073730.1 MGP_AJ_G0029927.1 mouse_genomes_project 5 113415651 113416446 - Rnf10 protein_coding processed_transcript MGP_AJ_T0073731.1 MGP_AJ_G0029927.1 mouse_genomes_project 5 113418252 113420073 - Rnf10 protein_coding retained_intron MGP_AJ_T0073732.1 MGP_AJ_G0029927.1 mouse_genomes_project 5 113418273 113424679 - Rnf10 protein_coding processed_transcript MGP_AJ_T0073733.1 MGP_AJ_G0029927.1 mouse_genomes_project 5 113420666 113422345 - Rnf10 protein_coding retained_intron MGP_AJ_T0073734.1 MGP_AJ_G0029927.1 mouse_genomes_project 5 113435821 113438084 - Rnf10 protein_coding retained_intron MGP_AJ_T0101304.1 MGP_AJ_G0039270.1 mouse_genomes_project 5 97547975 97548051 + Gm26252 snoRNA snoRNA MGP_AJ_T0073709.1 MGP_AJ_G0029924.1 mouse_genomes_project 5 113305363 113320457 - MGP_AJ_P0073709 Mlec protein_coding protein_coding MGP_AJ_T0073710.1 MGP_AJ_G0029924.1 mouse_genomes_project 5 113310490 113313329 - Mlec protein_coding processed_transcript MGP_AJ_T0001791.1 MGP_AJ_G0001706.1 mouse_genomes_project 5 116910275 116912968 + TEC TEC MGP_AJ_T0008196.1 MGP_AJ_G0006678.1 mouse_genomes_project 5 74760812 74769447 + Gm42761 lincRNA lincRNA MGP_AJ_T0101306.1 MGP_AJ_G0039272.1 mouse_genomes_project 5 98528476 98528610 + Gm26286 snoRNA snoRNA MGP_AJ_T0008250.1 MGP_AJ_G0006720.1 mouse_genomes_project 5 101039961 101042354 - 5430427N15Rik lincRNA lincRNA MGP_AJ_T0004671.1 MGP_AJ_G0004043.1 mouse_genomes_project 5 32762033 32769551 - 4931431C16Rik antisense antisense MGP_AJ_T0015047.1 MGP_AJ_G0013142.1 mouse_genomes_project 5 83271520 83271731 - processed_pseudogene processed_pseudogene MGP_AJ_T0010723.1 MGP_AJ_G0008845.1 mouse_genomes_project 5 135564336 135564445 + Mir702 miRNA miRNA MGP_AJ_T0008298.1 MGP_AJ_G0006749.1 mouse_genomes_project 5 109884822 109899080 + Gm42487 lincRNA lincRNA MGP_AJ_T0008299.1 MGP_AJ_G0006749.1 mouse_genomes_project 5 109886654 109898997 + Gm42487 lincRNA lincRNA MGP_AJ_T0001678.1 MGP_AJ_G0001594.1 mouse_genomes_project 5 66517147 66519023 - TEC TEC MGP_AJ_T0100060.1 MGP_AJ_G0038026.1 mouse_genomes_project 5 134434947 134435054 + Gm22450 snRNA snRNA MGP_AJ_T0075153.1 MGP_AJ_G0030175.1 mouse_genomes_project 5 135262865 135270494 + MGP_AJ_P0075153 Myl10 protein_coding protein_coding MGP_AJ_T0075154.1 MGP_AJ_G0030175.1 mouse_genomes_project 5 135262897 135270392 + MGP_AJ_P0075154 Myl10 protein_coding protein_coding MGP_AJ_T0075155.1 MGP_AJ_G0030175.1 mouse_genomes_project 5 135263418 135270494 + MGP_AJ_P0075155 Myl10 protein_coding protein_coding MGP_AJ_T0075156.1 MGP_AJ_G0030175.1 mouse_genomes_project 5 135263890 135270494 + MGP_AJ_P0075156 Myl10 protein_coding protein_coding MGP_AJ_T0075157.1 MGP_AJ_G0030175.1 mouse_genomes_project 5 135267345 135270494 + Myl10 protein_coding retained_intron MGP_AJ_T0075158.1 MGP_AJ_G0030175.1 mouse_genomes_project 5 135267396 135270492 + Myl10 protein_coding retained_intron MGP_AJ_T0071869.1 MGP_AJ_G0029538.1 mouse_genomes_project 5 62182794 62259423 + MGP_AJ_P0071869 Fam114a1 protein_coding protein_coding MGP_AJ_T0071870.1 MGP_AJ_G0029538.1 mouse_genomes_project 5 62185209 62219430 + MGP_AJ_P0071870 Fam114a1 protein_coding protein_coding MGP_AJ_T0004868.1 MGP_AJ_G0004186.1 mouse_genomes_project 5 137841226 137846748 + 6330403L08Rik antisense antisense MGP_AJ_T0004869.1 MGP_AJ_G0004186.1 mouse_genomes_project 5 137841226 137846747 + 6330403L08Rik antisense antisense MGP_AJ_T0072443.1 MGP_AJ_G0029632.1 mouse_genomes_project 5 83343214 83376592 + MGP_AJ_P0072443 Stap1 protein_coding protein_coding MGP_AJ_T0072444.1 MGP_AJ_G0029632.1 mouse_genomes_project 5 83343218 83368248 + Stap1 protein_coding retained_intron MGP_AJ_T0072445.1 MGP_AJ_G0029632.1 mouse_genomes_project 5 83343242 83358885 + Stap1 protein_coding retained_intron MGP_AJ_T0072446.1 MGP_AJ_G0029632.1 mouse_genomes_project 5 83343251 83358881 + Stap1 protein_coding retained_intron MGP_AJ_T0072447.1 MGP_AJ_G0029632.1 mouse_genomes_project 5 83343280 83374478 + MGP_AJ_P0072447 Stap1 protein_coding protein_coding MGP_AJ_T0072448.1 MGP_AJ_G0029632.1 mouse_genomes_project 5 83359330 83365310 + Stap1 protein_coding retained_intron MGP_AJ_T0014879.1 MGP_AJ_G0012974.1 mouse_genomes_project 5 17749091 17749466 + processed_pseudogene processed_pseudogene MGP_AJ_T0070316.1 MGP_AJ_G0029270.1 mouse_genomes_project 5 14514751 14665811 + MGP_AJ_P0070316 Sema3c protein_coding protein_coding MGP_AJ_T0070317.1 MGP_AJ_G0029270.1 mouse_genomes_project 5 14515119 14619441 + MGP_AJ_P0070317 Sema3c protein_coding nonsense_mediated_decay MGP_AJ_T0070318.1 MGP_AJ_G0029270.1 mouse_genomes_project 5 14515236 14518650 + Sema3c protein_coding retained_intron MGP_AJ_T0070319.1 MGP_AJ_G0029270.1 mouse_genomes_project 5 14515369 14608768 + MGP_AJ_P0070319 Sema3c protein_coding protein_coding MGP_AJ_T0070320.1 MGP_AJ_G0029270.1 mouse_genomes_project 5 14629733 14665808 + Sema3c protein_coding retained_intron MGP_AJ_T0015091.1 MGP_AJ_G0013186.1 mouse_genomes_project 5 101677044 101677266 + processed_pseudogene processed_pseudogene MGP_AJ_T0073599.1 MGP_AJ_G0029901.1 mouse_genomes_project 5 112501500 112518400 - MGP_AJ_P0073599 Kctd10 protein_coding protein_coding MGP_AJ_T0073600.1 MGP_AJ_G0029901.1 mouse_genomes_project 5 112502395 112518381 - MGP_AJ_P0073600 Kctd10 protein_coding nonsense_mediated_decay MGP_AJ_T0073601.1 MGP_AJ_G0029901.1 mouse_genomes_project 5 112503555 112518375 - MGP_AJ_P0073601 Kctd10 protein_coding protein_coding MGP_AJ_T0073602.1 MGP_AJ_G0029901.1 mouse_genomes_project 5 112503639 112510072 - Kctd10 protein_coding processed_transcript MGP_AJ_T0073603.1 MGP_AJ_G0029901.1 mouse_genomes_project 5 112504816 112506603 - Kctd10 protein_coding retained_intron MGP_AJ_T0073604.1 MGP_AJ_G0029901.1 mouse_genomes_project 5 112504836 112508143 - Kctd10 protein_coding retained_intron MGP_AJ_T0073605.1 MGP_AJ_G0029901.1 mouse_genomes_project 5 112504917 112507186 - Kctd10 protein_coding retained_intron MGP_AJ_T0001529.1 MGP_AJ_G0001447.1 mouse_genomes_project 5 40951813 40953885 - TEC TEC MGP_AJ_T0004730.1 MGP_AJ_G0004090.1 mouse_genomes_project 5 85181036 85184490 - Gm42794 antisense antisense MGP_AJ_T0074797.1 MGP_AJ_G0030117.1 mouse_genomes_project 5 129342504 129782553 - MGP_AJ_P0074797 Wbscr17 protein_coding protein_coding MGP_AJ_T0074798.1 MGP_AJ_G0030117.1 mouse_genomes_project 5 129435744 129782132 - MGP_AJ_P0074798 Wbscr17 protein_coding protein_coding MGP_AJ_T0074799.1 MGP_AJ_G0030117.1 mouse_genomes_project 5 129553751 129780971 - Wbscr17 protein_coding retained_intron MGP_AJ_T0074800.1 MGP_AJ_G0030117.1 mouse_genomes_project 5 129618579 129781929 - Wbscr17 protein_coding retained_intron MGP_AJ_T0074801.1 MGP_AJ_G0030117.1 mouse_genomes_project 5 129780905 129782134 - Wbscr17 protein_coding processed_transcript MGP_AJ_T0004764.1 MGP_AJ_G0004112.1 mouse_genomes_project 5 105464377 105468466 - A930041C12Rik antisense antisense MGP_AJ_T0008301.1 MGP_AJ_G0006751.1 mouse_genomes_project 5 110258215 110267407 + Gm42491 lincRNA lincRNA MGP_AJ_T0014972.1 MGP_AJ_G0013067.1 mouse_genomes_project 5 48085185 48085750 + processed_pseudogene processed_pseudogene MGP_AJ_T0018213.1 MGP_AJ_G0015597.1 mouse_genomes_project 5 149126621 149134289 + Gm43451 processed_transcript lincRNA MGP_AJ_T0018214.1 MGP_AJ_G0015597.1 mouse_genomes_project 5 149133664 149134534 + Gm43451 processed_transcript retained_intron MGP_AJ_T0001552.1 MGP_AJ_G0001470.1 mouse_genomes_project 5 43692544 43693727 + TEC TEC MGP_AJ_T0001883.1 MGP_AJ_G0001796.1 mouse_genomes_project 5 134909797 134914157 - TEC TEC MGP_AJ_T0098687.1 MGP_AJ_G0036671.1 mouse_genomes_project 5 20642638 20642731 - Gm24009 rRNA rRNA MGP_AJ_T0001712.1 MGP_AJ_G0001627.1 mouse_genomes_project 5 87853282 87855925 + TEC TEC MGP_AJ_T0076143.1 MGP_AJ_G0030382.1 mouse_genomes_project 5 149740436 149752347 - MGP_AJ_P0076143 Zar1l protein_coding protein_coding MGP_AJ_T0102656.1 MGP_AJ_G0040398.1 mouse_genomes_project 5 144969831 144985429 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0072284.1 MGP_AJ_G0029607.1 mouse_genomes_project 5 73195889 73241935 - MGP_AJ_P0072284 Kdr protein_coding protein_coding MGP_AJ_T0072285.1 MGP_AJ_G0029607.1 mouse_genomes_project 5 73220845 73241935 - Kdr protein_coding retained_intron MGP_AJ_T0072286.1 MGP_AJ_G0029607.1 mouse_genomes_project 5 73224722 73241935 - Kdr protein_coding retained_intron MGP_AJ_T0001504.1 MGP_AJ_G0001422.1 mouse_genomes_project 5 30127874 30129123 + TEC TEC MGP_AJ_T0015137.1 MGP_AJ_G0013232.1 mouse_genomes_project 5 113665984 113666485 - processed_pseudogene processed_pseudogene MGP_AJ_T0004835.1 MGP_AJ_G0004162.1 mouse_genomes_project 5 123238200 123238712 - Gm43777 antisense antisense MGP_AJ_T0071569.1 MGP_AJ_G0029486.1 mouse_genomes_project 5 39293328 39446573 + MGP_AJ_P0071569 Gm16223 protein_coding protein_coding MGP_AJ_T0100043.1 MGP_AJ_G0038009.1 mouse_genomes_project 5 105136941 105137043 + Gm22557 snRNA snRNA MGP_AJ_T0001792.1 MGP_AJ_G0001707.1 mouse_genomes_project 5 117202709 117205144 - TEC TEC MGP_AJ_T0072349.1 MGP_AJ_G0029617.1 mouse_genomes_project 5 74185361 74215016 - MGP_AJ_P0072349 Ppat protein_coding nonsense_mediated_decay MGP_AJ_T0072350.1 MGP_AJ_G0029617.1 mouse_genomes_project 5 74185388 74215022 - MGP_AJ_P0072350 Ppat protein_coding protein_coding MGP_AJ_T0072351.1 MGP_AJ_G0029617.1 mouse_genomes_project 5 74187163 74214609 - Ppat protein_coding retained_intron MGP_AJ_T0004845.1 MGP_AJ_G0004170.1 mouse_genomes_project 5 130360864 130364364 + 4930563F08Rik antisense antisense MGP_AJ_T0073535.1 MGP_AJ_G0029890.1 mouse_genomes_project 5 111939312 111940343 - MGP_AJ_P0073535 Selplg protein_coding protein_coding MGP_AJ_T0073536.1 MGP_AJ_G0029890.1 mouse_genomes_project 5 111939323 111952081 - MGP_AJ_P0073536 Selplg protein_coding protein_coding MGP_AJ_T0073537.1 MGP_AJ_G0029890.1 mouse_genomes_project 5 111939331 111940094 - MGP_AJ_P0073537 Selplg protein_coding protein_coding MGP_AJ_T0073538.1 MGP_AJ_G0029890.1 mouse_genomes_project 5 111939331 111940034 - MGP_AJ_P0073538 Selplg protein_coding protein_coding MGP_AJ_T0073539.1 MGP_AJ_G0029890.1 mouse_genomes_project 5 111940882 111954228 - MGP_AJ_P0073539 Selplg protein_coding protein_coding MGP_AJ_T0073540.1 MGP_AJ_G0029890.1 mouse_genomes_project 5 111948895 111952052 - Selplg protein_coding retained_intron MGP_AJ_T0070774.1 MGP_AJ_G0029361.1 mouse_genomes_project 5 27729515 27815929 + MGP_AJ_P0070774 Dpysl5 protein_coding protein_coding MGP_AJ_T0070775.1 MGP_AJ_G0029361.1 mouse_genomes_project 5 27729533 27818976 + MGP_AJ_P0070775 Dpysl5 protein_coding protein_coding MGP_AJ_T0070776.1 MGP_AJ_G0029361.1 mouse_genomes_project 5 27729540 27766995 + MGP_AJ_P0070776 Dpysl5 protein_coding protein_coding MGP_AJ_T0070777.1 MGP_AJ_G0029361.1 mouse_genomes_project 5 27796990 27806504 + Dpysl5 protein_coding processed_transcript MGP_AJ_T0070778.1 MGP_AJ_G0029361.1 mouse_genomes_project 5 27807759 27815915 + Dpysl5 protein_coding retained_intron MGP_AJ_T0070779.1 MGP_AJ_G0029361.1 mouse_genomes_project 5 27811605 27816021 + Dpysl5 protein_coding retained_intron MGP_AJ_T0070780.1 MGP_AJ_G0029361.1 mouse_genomes_project 5 27813326 27816168 + Dpysl5 protein_coding retained_intron MGP_AJ_T0008188.1 MGP_AJ_G0006671.1 mouse_genomes_project 5 73310267 73322516 + Gm32780 lincRNA lincRNA MGP_AJ_T0001828.1 MGP_AJ_G0001742.1 mouse_genomes_project 5 124892677 124893660 + TEC TEC MGP_AJ_T0008249.1 MGP_AJ_G0006719.1 mouse_genomes_project 5 101032247 101033953 + Gm42618 lincRNA lincRNA MGP_AJ_T0004880.1 MGP_AJ_G0004194.1 mouse_genomes_project 5 142342373 142355396 - Gm20635 antisense antisense MGP_AJ_T0075089.1 MGP_AJ_G0030165.1 mouse_genomes_project 5 134599846 134607805 + MGP_AJ_P0075089 Upk3b protein_coding protein_coding MGP_AJ_T0011832.1 MGP_AJ_G0009931.1 mouse_genomes_project 5 119063065 119065016 + Oas1b polymorphic_pseudogene processed_transcript MGP_AJ_T0011833.1 MGP_AJ_G0009931.1 mouse_genomes_project 5 119063068 119078942 + MGP_AJ_P0011833 Oas1b polymorphic_pseudogene polymorphic_pseudogene MGP_AJ_T0074003.1 MGP_AJ_G0009931.1 mouse_genomes_project 5 119063287 119078947 + MGP_AJ_P0074003 Oas1b polymorphic_pseudogene unknown_likely_coding MGP_AJ_T0015101.1 MGP_AJ_G0013196.1 mouse_genomes_project 5 104736339 104736699 + processed_pseudogene processed_pseudogene MGP_AJ_T0075648.1 MGP_AJ_G0030276.1 mouse_genomes_project 5 139646309 139719072 - MGP_AJ_P0075648 Gna12 protein_coding protein_coding MGP_AJ_T0075469.1 MGP_AJ_G0030240.1 mouse_genomes_project 5 137465188 137483062 + MGP_AJ_P0075469 A430033K04Rik protein_coding protein_coding MGP_AJ_T0075470.1 MGP_AJ_G0030240.1 mouse_genomes_project 5 137465205 137495567 + MGP_AJ_P0075470 A430033K04Rik protein_coding protein_coding MGP_AJ_T0075471.1 MGP_AJ_G0030240.1 mouse_genomes_project 5 137465223 137491960 + MGP_AJ_P0075471 A430033K04Rik protein_coding protein_coding MGP_AJ_T0015032.1 MGP_AJ_G0013127.1 mouse_genomes_project 5 73660602 73660754 + processed_pseudogene processed_pseudogene MGP_AJ_T0015027.1 MGP_AJ_G0013122.1 mouse_genomes_project 5 72367257 72367546 + processed_pseudogene processed_pseudogene MGP_AJ_T0001636.1 MGP_AJ_G0001552.1 mouse_genomes_project 5 62758276 62762469 - TEC TEC MGP_AJ_T0004745.1 MGP_AJ_G0004100.1 mouse_genomes_project 5 97356921 97364816 + Gm16226 antisense antisense MGP_AJ_T0004746.1 MGP_AJ_G0004100.1 mouse_genomes_project 5 97356921 97390817 + Gm16226 antisense antisense MGP_AJ_T0004747.1 MGP_AJ_G0004100.1 mouse_genomes_project 5 97356926 97390819 + Gm16226 antisense antisense MGP_AJ_T0004748.1 MGP_AJ_G0004100.1 mouse_genomes_project 5 97356950 97390815 + Gm16226 antisense antisense MGP_AJ_T0001597.1 MGP_AJ_G0001514.1 mouse_genomes_project 5 49414825 49417691 + TEC TEC MGP_AJ_T0015106.1 MGP_AJ_G0013201.1 mouse_genomes_project 5 105902419 105903505 - processed_pseudogene processed_pseudogene MGP_AJ_T0073942.1 MGP_AJ_G0029965.1 mouse_genomes_project 5 118675691 118685018 + MGP_AJ_P0073942 Lhx5 protein_coding protein_coding MGP_AJ_T0071094.1 MGP_AJ_G0029408.1 mouse_genomes_project 5 30249736 30308752 + MGP_AJ_P0071094 Slc5a1 protein_coding protein_coding MGP_AJ_T0001588.1 MGP_AJ_G0001505.1 mouse_genomes_project 5 48658086 48660017 + TEC TEC MGP_AJ_T0011596.1 MGP_AJ_G0009718.1 mouse_genomes_project 5 76959605 76959900 - Gm22553 misc_RNA misc_RNA MGP_AJ_T0071226.1 MGP_AJ_G0029430.1 mouse_genomes_project 5 31492860 31509964 + MGP_AJ_P0071226 Rnf4 protein_coding protein_coding MGP_AJ_T0071227.1 MGP_AJ_G0029430.1 mouse_genomes_project 5 31492899 31507051 + Rnf4 protein_coding retained_intron MGP_AJ_T0071228.1 MGP_AJ_G0029430.1 mouse_genomes_project 5 31492951 31509961 + MGP_AJ_P0071228 Rnf4 protein_coding protein_coding MGP_AJ_T0071229.1 MGP_AJ_G0029430.1 mouse_genomes_project 5 31492961 31506557 + Rnf4 protein_coding processed_transcript MGP_AJ_T0071230.1 MGP_AJ_G0029430.1 mouse_genomes_project 5 31492988 31503658 + Rnf4 protein_coding retained_intron MGP_AJ_T0071231.1 MGP_AJ_G0029430.1 mouse_genomes_project 5 31492990 31499195 + Rnf4 protein_coding processed_transcript MGP_AJ_T0071232.1 MGP_AJ_G0029430.1 mouse_genomes_project 5 31492995 31503950 + Rnf4 protein_coding retained_intron MGP_AJ_T0071233.1 MGP_AJ_G0029430.1 mouse_genomes_project 5 31493017 31506392 + Rnf4 protein_coding retained_intron MGP_AJ_T0071234.1 MGP_AJ_G0029430.1 mouse_genomes_project 5 31493256 31506554 + MGP_AJ_P0071234 Rnf4 protein_coding protein_coding MGP_AJ_T0071235.1 MGP_AJ_G0029430.1 mouse_genomes_project 5 31493503 31509949 + MGP_AJ_P0071235 Rnf4 protein_coding protein_coding MGP_AJ_T0071236.1 MGP_AJ_G0029430.1 mouse_genomes_project 5 31493890 31499231 + Rnf4 protein_coding processed_transcript MGP_AJ_T0071237.1 MGP_AJ_G0029430.1 mouse_genomes_project 5 31507640 31512154 + Rnf4 protein_coding retained_intron MGP_AJ_T0014842.1 MGP_AJ_G0012937.1 mouse_genomes_project 5 117445 117626 + processed_pseudogene processed_pseudogene MGP_AJ_T0001817.1 MGP_AJ_G0001732.1 mouse_genomes_project 5 122014792 122015255 - TEC TEC MGP_AJ_T0010691.1 MGP_AJ_G0008813.1 mouse_genomes_project 5 88261105 88261175 - Gm24322 miRNA miRNA MGP_AJ_T0073351.1 MGP_AJ_G0029853.1 mouse_genomes_project 5 108445073 108532651 - MGP_AJ_P0073351 Fbrsl1 protein_coding protein_coding MGP_AJ_T0073352.1 MGP_AJ_G0029853.1 mouse_genomes_project 5 108446110 108532634 - MGP_AJ_P0073352 Fbrsl1 protein_coding nonsense_mediated_decay MGP_AJ_T0073353.1 MGP_AJ_G0029853.1 mouse_genomes_project 5 108446361 108532315 - MGP_AJ_P0073353 Fbrsl1 protein_coding protein_coding MGP_AJ_T0073354.1 MGP_AJ_G0029853.1 mouse_genomes_project 5 108462260 108517159 - MGP_AJ_P0073354 Fbrsl1 protein_coding protein_coding MGP_AJ_T0073355.1 MGP_AJ_G0029853.1 mouse_genomes_project 5 108514019 108516007 - Fbrsl1 protein_coding processed_transcript MGP_AJ_T0073356.1 MGP_AJ_G0029853.1 mouse_genomes_project 5 108516139 108517466 - Fbrsl1 protein_coding processed_transcript MGP_AJ_T0073357.1 MGP_AJ_G0029853.1 mouse_genomes_project 5 108516139 108532651 - MGP_AJ_P0073357 Fbrsl1 protein_coding protein_coding MGP_AJ_T0008393.1 MGP_AJ_G0006810.1 mouse_genomes_project 5 125481603 125499303 + 4933438B17Rik lincRNA lincRNA MGP_AJ_T0008394.1 MGP_AJ_G0006810.1 mouse_genomes_project 5 125485009 125542844 + 4933438B17Rik lincRNA lincRNA MGP_AJ_T0008395.1 MGP_AJ_G0006810.1 mouse_genomes_project 5 125485016 125499158 + 4933438B17Rik lincRNA lincRNA MGP_AJ_T0011597.1 MGP_AJ_G0009719.1 mouse_genomes_project 5 87129286 87129610 + Gm25320 misc_RNA misc_RNA MGP_AJ_T0071406.1 MGP_AJ_G0029456.1 mouse_genomes_project 5 33669596 33677963 - MGP_AJ_P0071406 Tada2b protein_coding protein_coding MGP_AJ_T0015073.1 MGP_AJ_G0013168.1 mouse_genomes_project 5 90666427 90666809 + processed_pseudogene processed_pseudogene MGP_AJ_T0073019.1 MGP_AJ_G0029778.1 mouse_genomes_project 5 102126318 102132248 + MGP_AJ_P0073019 Spp1 protein_coding protein_coding MGP_AJ_T0073020.1 MGP_AJ_G0029778.1 mouse_genomes_project 5 102126318 102132246 + MGP_AJ_P0073020 Spp1 protein_coding protein_coding MGP_AJ_T0073021.1 MGP_AJ_G0029778.1 mouse_genomes_project 5 102126321 102132245 + MGP_AJ_P0073021 Spp1 protein_coding protein_coding MGP_AJ_T0073022.1 MGP_AJ_G0029778.1 mouse_genomes_project 5 102126339 102130741 + MGP_AJ_P0073022 Spp1 protein_coding protein_coding MGP_AJ_T0073023.1 MGP_AJ_G0029778.1 mouse_genomes_project 5 102126342 102130703 + MGP_AJ_P0073023 Spp1 protein_coding protein_coding MGP_AJ_T0073024.1 MGP_AJ_G0029778.1 mouse_genomes_project 5 102126358 102128909 + MGP_AJ_P0073024 Spp1 protein_coding protein_coding MGP_AJ_T0073025.1 MGP_AJ_G0029778.1 mouse_genomes_project 5 102127390 102132241 + MGP_AJ_P0073025 Spp1 protein_coding protein_coding MGP_AJ_T0074431.1 MGP_AJ_G0030049.1 mouse_genomes_project 5 122399318 122439459 + MGP_AJ_P0074431 Ccdc62 protein_coding protein_coding MGP_AJ_T0074432.1 MGP_AJ_G0030049.1 mouse_genomes_project 5 122399328 122405344 + Ccdc62 protein_coding retained_intron MGP_AJ_T0074433.1 MGP_AJ_G0030049.1 mouse_genomes_project 5 122399328 122439459 + MGP_AJ_P0074433 Ccdc62 protein_coding protein_coding MGP_AJ_T0074434.1 MGP_AJ_G0030049.1 mouse_genomes_project 5 122399338 122438474 + MGP_AJ_P0074434 Ccdc62 protein_coding unknown_likely_coding MGP_AJ_T0074435.1 MGP_AJ_G0030049.1 mouse_genomes_project 5 122412888 122422071 + Ccdc62 protein_coding processed_transcript MGP_AJ_T0074436.1 MGP_AJ_G0030049.1 mouse_genomes_project 5 122422048 122425166 + Ccdc62 protein_coding retained_intron MGP_AJ_T0074437.1 MGP_AJ_G0030049.1 mouse_genomes_project 5 122432138 122436665 + Ccdc62 protein_coding retained_intron MGP_AJ_T0099041.1 MGP_AJ_G0037018.1 mouse_genomes_project 5 31368588 31370720 - Gm15513 sense_intronic sense_intronic MGP_AJ_T0004723.1 MGP_AJ_G0004084.1 mouse_genomes_project 5 73554664 73555316 + Gm7467 antisense antisense MGP_AJ_T0075681.1 MGP_AJ_G0030285.1 mouse_genomes_project 5 141611320 141637800 + MGP_AJ_P0075681 Slc29a4 protein_coding protein_coding MGP_AJ_T0075682.1 MGP_AJ_G0030285.1 mouse_genomes_project 5 141626122 141649533 + MGP_AJ_P0075682 Slc29a4 protein_coding protein_coding MGP_AJ_T0015203.1 MGP_AJ_G0013298.1 mouse_genomes_project 5 145054788 145054989 - processed_pseudogene processed_pseudogene MGP_AJ_T0001760.1 MGP_AJ_G0001675.1 mouse_genomes_project 5 110476784 110477151 - TEC TEC MGP_AJ_T0014996.1 MGP_AJ_G0013091.1 mouse_genomes_project 5 57815354 57815776 + processed_pseudogene processed_pseudogene MGP_AJ_T0001456.1 MGP_AJ_G0001377.1 mouse_genomes_project 5 10894397 10896302 + TEC TEC MGP_AJ_T0004639.1 MGP_AJ_G0004016.1 mouse_genomes_project 5 12921476 12925359 - Gm43000 antisense antisense MGP_AJ_T0015184.1 MGP_AJ_G0013279.1 mouse_genomes_project 5 141539637 141539866 - processed_pseudogene processed_pseudogene MGP_AJ_T0001522.1 MGP_AJ_G0001440.1 mouse_genomes_project 5 40328807 40333304 - TEC TEC MGP_AJ_T0074187.1 MGP_AJ_G0030013.1 mouse_genomes_project 5 120769350 120778165 + MGP_AJ_P0074187 Vps29 protein_coding protein_coding MGP_AJ_T0074188.1 MGP_AJ_G0030013.1 mouse_genomes_project 5 120769371 120777371 + MGP_AJ_P0074188 Vps29 protein_coding protein_coding MGP_AJ_T0074189.1 MGP_AJ_G0030013.1 mouse_genomes_project 5 120769374 120777116 + Vps29 protein_coding processed_transcript MGP_AJ_T0074190.1 MGP_AJ_G0030013.1 mouse_genomes_project 5 120769387 120778090 + MGP_AJ_P0074190 Vps29 protein_coding nonsense_mediated_decay MGP_AJ_T0074191.1 MGP_AJ_G0030013.1 mouse_genomes_project 5 120769405 120777065 + MGP_AJ_P0074191 Vps29 protein_coding protein_coding MGP_AJ_T0074192.1 MGP_AJ_G0030013.1 mouse_genomes_project 5 120769425 120777147 + MGP_AJ_P0074192 Vps29 protein_coding nonsense_mediated_decay MGP_AJ_T0074193.1 MGP_AJ_G0030013.1 mouse_genomes_project 5 120769439 120779678 + MGP_AJ_P0074193 Vps29 protein_coding protein_coding MGP_AJ_T0074194.1 MGP_AJ_G0030013.1 mouse_genomes_project 5 120772505 120775869 + Vps29 protein_coding retained_intron MGP_AJ_T0001512.1 MGP_AJ_G0001430.1 mouse_genomes_project 5 32732233 32734938 - TEC TEC MGP_AJ_T0008102.1 MGP_AJ_G0006606.1 mouse_genomes_project 5 32560812 32570133 - E130018O15Rik lincRNA lincRNA MGP_AJ_T0072389.1 MGP_AJ_G0029627.1 mouse_genomes_project 5 74621350 74680681 - MGP_AJ_P0072389 Igfbp7 protein_coding protein_coding MGP_AJ_T0072390.1 MGP_AJ_G0029627.1 mouse_genomes_project 5 74621358 74680680 - MGP_AJ_P0072390 Igfbp7 protein_coding protein_coding MGP_AJ_T0070240.1 MGP_AJ_G0029253.1 mouse_genomes_project 5 5939316 6001703 + MGP_AJ_P0070240 Tmem243 protein_coding nonsense_mediated_decay MGP_AJ_T0070241.1 MGP_AJ_G0029253.1 mouse_genomes_project 5 5939435 5962091 + MGP_AJ_P0070241 Tmem243 protein_coding protein_coding MGP_AJ_T0070261.1 MGP_AJ_G0029253.1 mouse_genomes_project 5 5999355 6004599 + Tmem243 protein_coding processed_transcript MGP_AJ_T0008058.1 MGP_AJ_G0006579.1 mouse_genomes_project 5 19486502 19494821 + lincRNA lincRNA MGP_AJ_T0008059.1 MGP_AJ_G0006579.1 mouse_genomes_project 5 19486509 19740749 + lincRNA lincRNA MGP_AJ_T0008060.1 MGP_AJ_G0006579.1 mouse_genomes_project 5 19490565 19494014 + lincRNA lincRNA MGP_AJ_T0001610.1 MGP_AJ_G0001527.1 mouse_genomes_project 5 55089890 55092621 + TEC TEC MGP_AJ_T0072014.1 MGP_AJ_G0029559.1 mouse_genomes_project 5 63997191 64314226 + MGP_AJ_P0072014 Limch1 protein_coding protein_coding MGP_AJ_T0072015.1 MGP_AJ_G0029559.1 mouse_genomes_project 5 63997228 64236866 + Limch1 protein_coding retained_intron MGP_AJ_T0072016.1 MGP_AJ_G0029559.1 mouse_genomes_project 5 63997268 63999797 + Limch1 protein_coding retained_intron MGP_AJ_T0072017.1 MGP_AJ_G0029559.1 mouse_genomes_project 5 63997284 64313135 + MGP_AJ_P0072017 Limch1 protein_coding protein_coding MGP_AJ_T0072018.1 MGP_AJ_G0029559.1 mouse_genomes_project 5 63997290 64214994 + MGP_AJ_P0072018 Limch1 protein_coding nonsense_mediated_decay MGP_AJ_T0072019.1 MGP_AJ_G0029559.1 mouse_genomes_project 5 64156297 64231357 + MGP_AJ_P0072019 Limch1 protein_coding protein_coding MGP_AJ_T0072020.1 MGP_AJ_G0029559.1 mouse_genomes_project 5 64230208 64311755 + Limch1 protein_coding processed_transcript MGP_AJ_T0072021.1 MGP_AJ_G0029559.1 mouse_genomes_project 5 64230619 64314217 + MGP_AJ_P0072021 Limch1 protein_coding protein_coding MGP_AJ_T0072022.1 MGP_AJ_G0029559.1 mouse_genomes_project 5 64230768 64294310 + Limch1 protein_coding retained_intron MGP_AJ_T0072023.1 MGP_AJ_G0029559.1 mouse_genomes_project 5 64230780 64261260 + MGP_AJ_P0072023 Limch1 protein_coding protein_coding MGP_AJ_T0072024.1 MGP_AJ_G0029559.1 mouse_genomes_project 5 64230853 64237119 + Limch1 protein_coding retained_intron MGP_AJ_T0072025.1 MGP_AJ_G0029559.1 mouse_genomes_project 5 64231164 64261290 + MGP_AJ_P0072025 Limch1 protein_coding protein_coding MGP_AJ_T0072026.1 MGP_AJ_G0029559.1 mouse_genomes_project 5 64239221 64261736 + Limch1 protein_coding processed_transcript MGP_AJ_T0072027.1 MGP_AJ_G0029559.1 mouse_genomes_project 5 64259590 64261841 + Limch1 protein_coding retained_intron MGP_AJ_T0072028.1 MGP_AJ_G0029559.1 mouse_genomes_project 5 64301405 64311707 + Limch1 protein_coding processed_transcript MGP_AJ_T0072029.1 MGP_AJ_G0029559.1 mouse_genomes_project 5 64301460 64311702 + MGP_AJ_P0072029 Limch1 protein_coding nonsense_mediated_decay MGP_AJ_T0102635.1 MGP_AJ_G0040377.1 mouse_genomes_project 5 84324698 84325761 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0001474.1 MGP_AJ_G0001395.1 mouse_genomes_project 5 20371089 20371870 + TEC TEC MGP_AJ_T0015087.1 MGP_AJ_G0013182.1 mouse_genomes_project 5 100109682 100110414 + processed_pseudogene processed_pseudogene MGP_AJ_T0075212.1 MGP_AJ_G0030188.1 mouse_genomes_project 5 135839385 135842011 + MGP_AJ_P0075212 Ache protein_coding protein_coding MGP_AJ_T0075213.1 MGP_AJ_G0030188.1 mouse_genomes_project 5 135839632 135842011 + MGP_AJ_P0075213 Ache protein_coding protein_coding MGP_AJ_T0075214.1 MGP_AJ_G0030188.1 mouse_genomes_project 5 135839632 135842011 + MGP_AJ_P0075214 Ache protein_coding protein_coding MGP_AJ_T0075215.1 MGP_AJ_G0030188.1 mouse_genomes_project 5 135840143 135846342 + MGP_AJ_P0075215 Ache protein_coding protein_coding MGP_AJ_T0075216.1 MGP_AJ_G0030188.1 mouse_genomes_project 5 135840149 135846337 + MGP_AJ_P0075216 Ache protein_coding protein_coding MGP_AJ_T0075217.1 MGP_AJ_G0030188.1 mouse_genomes_project 5 135840150 135846336 + MGP_AJ_P0075217 Ache protein_coding protein_coding MGP_AJ_T0075218.1 MGP_AJ_G0030188.1 mouse_genomes_project 5 135840151 135844205 + Ache protein_coding retained_intron MGP_AJ_T0075219.1 MGP_AJ_G0030188.1 mouse_genomes_project 5 135840944 135842011 + MGP_AJ_P0075219 Ache protein_coding protein_coding MGP_AJ_T0075220.1 MGP_AJ_G0030188.1 mouse_genomes_project 5 135841103 135842011 + MGP_AJ_P0075220 Ache protein_coding protein_coding MGP_AJ_T0072698.1 MGP_AJ_G0029710.1 mouse_genomes_project 5 89671293 89676807 - MGP_AJ_P0072698 U90926 protein_coding protein_coding MGP_AJ_T0072699.1 MGP_AJ_G0029710.1 mouse_genomes_project 5 89671296 89676807 - MGP_AJ_P0072699 U90926 protein_coding protein_coding MGP_AJ_T0072700.1 MGP_AJ_G0029710.1 mouse_genomes_project 5 89671514 89673751 - U90926 protein_coding retained_intron MGP_AJ_T0008458.1 MGP_AJ_G0006859.1 mouse_genomes_project 5 148011782 148028619 + Gm15407 lincRNA lincRNA MGP_AJ_T0099998.1 MGP_AJ_G0037964.1 mouse_genomes_project 5 29248368 29248475 + Gm26335 snRNA snRNA MGP_AJ_T0075917.1 MGP_AJ_G0030332.1 mouse_genomes_project 5 144162417 144179457 + MGP_AJ_P0075917 Zkscan5 protein_coding protein_coding MGP_AJ_T0075918.1 MGP_AJ_G0030332.1 mouse_genomes_project 5 144162523 144179457 + MGP_AJ_P0075918 Zkscan5 protein_coding protein_coding MGP_AJ_T0075919.1 MGP_AJ_G0030332.1 mouse_genomes_project 5 144162976 144176309 + MGP_AJ_P0075919 Zkscan5 protein_coding nonsense_mediated_decay MGP_AJ_T0075920.1 MGP_AJ_G0030332.1 mouse_genomes_project 5 144165459 144176173 + MGP_AJ_P0075920 Zkscan5 protein_coding nonsense_mediated_decay MGP_AJ_T0075921.1 MGP_AJ_G0030332.1 mouse_genomes_project 5 144165489 144176227 + MGP_AJ_P0075921 Zkscan5 protein_coding protein_coding MGP_AJ_T0075922.1 MGP_AJ_G0030332.1 mouse_genomes_project 5 144166385 144176043 + Zkscan5 protein_coding processed_transcript MGP_AJ_T0001635.1 MGP_AJ_G0001551.1 mouse_genomes_project 5 62717669 62718589 + TEC TEC MGP_AJ_T0072501.1 MGP_AJ_G0029656.1 mouse_genomes_project 5 85000274 85008682 + Csn1s1 protein_coding retained_intron MGP_AJ_T0072502.1 MGP_AJ_G0029656.1 mouse_genomes_project 5 85000274 85001544 + Csn1s1 protein_coding retained_intron MGP_AJ_T0072503.1 MGP_AJ_G0029656.1 mouse_genomes_project 5 85000274 85001602 + Csn1s1 protein_coding retained_intron MGP_AJ_T0072504.1 MGP_AJ_G0029656.1 mouse_genomes_project 5 85000293 85008291 + MGP_AJ_P0072504 Csn1s1 protein_coding protein_coding MGP_AJ_T0072505.1 MGP_AJ_G0029656.1 mouse_genomes_project 5 85000294 85016645 + MGP_AJ_P0072505 Csn1s1 protein_coding protein_coding MGP_AJ_T0072506.1 MGP_AJ_G0029656.1 mouse_genomes_project 5 85000299 85016645 + MGP_AJ_P0072506 Csn1s1 protein_coding protein_coding MGP_AJ_T0072507.1 MGP_AJ_G0029656.1 mouse_genomes_project 5 85000913 85009147 + Csn1s1 protein_coding processed_transcript MGP_AJ_T0072508.1 MGP_AJ_G0029656.1 mouse_genomes_project 5 85001299 85003804 + Csn1s1 protein_coding retained_intron MGP_AJ_T0072509.1 MGP_AJ_G0029656.1 mouse_genomes_project 5 85005069 85010259 + MGP_AJ_P0072509 Csn1s1 protein_coding nonsense_mediated_decay MGP_AJ_T0072510.1 MGP_AJ_G0029656.1 mouse_genomes_project 5 85005580 85006506 + Csn1s1 protein_coding retained_intron MGP_AJ_T0072511.1 MGP_AJ_G0029656.1 mouse_genomes_project 5 85011352 85013136 + Csn1s1 protein_coding retained_intron MGP_AJ_T0072512.1 MGP_AJ_G0029656.1 mouse_genomes_project 5 85011665 85016565 + Csn1s1 protein_coding retained_intron MGP_AJ_T0072513.1 MGP_AJ_G0029656.1 mouse_genomes_project 5 85012814 85016591 + Csn1s1 protein_coding retained_intron MGP_AJ_T0072514.1 MGP_AJ_G0029656.1 mouse_genomes_project 5 85014595 85016125 + Csn1s1 protein_coding retained_intron MGP_AJ_T0004862.1 MGP_AJ_G0004184.1 mouse_genomes_project 5 136177782 136180180 + Gm36266 antisense antisense MGP_AJ_T0008182.1 MGP_AJ_G0006666.1 mouse_genomes_project 5 72648561 72660057 - Gm42800 lincRNA lincRNA MGP_AJ_T0010679.1 MGP_AJ_G0008801.1 mouse_genomes_project 5 61309607 61309703 - Gm22395 miRNA miRNA MGP_AJ_T0072199.1 MGP_AJ_G0029592.1 mouse_genomes_project 5 70572421 70588823 - MGP_AJ_P0072199 Ociad2 protein_coding protein_coding MGP_AJ_T0072200.1 MGP_AJ_G0029592.1 mouse_genomes_project 5 70572423 70588927 - MGP_AJ_P0072200 Ociad2 protein_coding protein_coding MGP_AJ_T0072201.1 MGP_AJ_G0029592.1 mouse_genomes_project 5 70572423 70588924 - MGP_AJ_P0072201 Ociad2 protein_coding protein_coding MGP_AJ_T0072202.1 MGP_AJ_G0029592.1 mouse_genomes_project 5 70573558 70588507 - MGP_AJ_P0072202 Ociad2 protein_coding protein_coding MGP_AJ_T0072203.1 MGP_AJ_G0029592.1 mouse_genomes_project 5 70577867 70590987 - MGP_AJ_P0072203 Ociad2 protein_coding protein_coding MGP_AJ_T0001608.1 MGP_AJ_G0001525.1 mouse_genomes_project 5 54977358 54979957 + TEC TEC MGP_AJ_T0075938.1 MGP_AJ_G0030341.1 mouse_genomes_project 5 145104248 145216847 + MGP_AJ_P0075938 Cyp3a59 protein_coding nonsense_mediated_decay MGP_AJ_T0075940.1 MGP_AJ_G0030341.1 mouse_genomes_project 5 145104258 145216845 + MGP_AJ_P0075940 Cyp3a59 protein_coding protein_coding MGP_AJ_T0102626.1 MGP_AJ_G0040368.1 mouse_genomes_project 5 117451 117619 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0008449.1 MGP_AJ_G0006850.1 mouse_genomes_project 5 145869653 145870528 + 4930573C15Rik lincRNA lincRNA MGP_AJ_T0100025.1 MGP_AJ_G0037991.1 mouse_genomes_project 5 80075492 80075589 + Gm24129 snRNA snRNA MGP_AJ_T0072334.1 MGP_AJ_G0029616.1 mouse_genomes_project 5 74145392 74177526 - MGP_AJ_P0072334 Aasdh protein_coding nonsense_mediated_decay MGP_AJ_T0072335.1 MGP_AJ_G0029616.1 mouse_genomes_project 5 74147668 74148401 - Aasdh protein_coding processed_transcript MGP_AJ_T0072336.1 MGP_AJ_G0029616.1 mouse_genomes_project 5 74147668 74177613 - MGP_AJ_P0072336 Aasdh protein_coding protein_coding MGP_AJ_T0072337.1 MGP_AJ_G0029616.1 mouse_genomes_project 5 74147673 74177612 - MGP_AJ_P0072337 Aasdh protein_coding nonsense_mediated_decay MGP_AJ_T0072338.1 MGP_AJ_G0029616.1 mouse_genomes_project 5 74147719 74174265 - MGP_AJ_P0072338 Aasdh protein_coding protein_coding MGP_AJ_T0072339.1 MGP_AJ_G0029616.1 mouse_genomes_project 5 74147901 74154040 - MGP_AJ_P0072339 Aasdh protein_coding protein_coding MGP_AJ_T0072340.1 MGP_AJ_G0029616.1 mouse_genomes_project 5 74151554 74177591 - Aasdh protein_coding retained_intron MGP_AJ_T0072341.1 MGP_AJ_G0029616.1 mouse_genomes_project 5 74154496 74177586 - MGP_AJ_P0072341 Aasdh protein_coding protein_coding MGP_AJ_T0072342.1 MGP_AJ_G0029616.1 mouse_genomes_project 5 74154511 74156301 - Aasdh protein_coding retained_intron MGP_AJ_T0072343.1 MGP_AJ_G0029616.1 mouse_genomes_project 5 74164366 74166822 - Aasdh protein_coding retained_intron MGP_AJ_T0072344.1 MGP_AJ_G0029616.1 mouse_genomes_project 5 74166193 74177591 - Aasdh protein_coding processed_transcript MGP_AJ_T0072345.1 MGP_AJ_G0029616.1 mouse_genomes_project 5 74168322 74177591 - Aasdh protein_coding retained_intron MGP_AJ_T0072346.1 MGP_AJ_G0029616.1 mouse_genomes_project 5 74174083 74177489 - MGP_AJ_P0072346 Aasdh protein_coding protein_coding MGP_AJ_T0072347.1 MGP_AJ_G0029616.1 mouse_genomes_project 5 74174172 74177602 - MGP_AJ_P0072347 Aasdh protein_coding protein_coding MGP_AJ_T0072348.1 MGP_AJ_G0029616.1 mouse_genomes_project 5 74176426 74177527 - Aasdh protein_coding processed_transcript MGP_AJ_T0072370.1 MGP_AJ_G0029621.1 mouse_genomes_project 5 74279158 74323847 + MGP_AJ_P0072370 Thegl protein_coding protein_coding MGP_AJ_T0072371.1 MGP_AJ_G0029621.1 mouse_genomes_project 5 74279158 74323854 + MGP_AJ_P0072371 Thegl protein_coding protein_coding MGP_AJ_T0072372.1 MGP_AJ_G0029621.1 mouse_genomes_project 5 74299340 74309793 + MGP_AJ_P0072372 Thegl protein_coding protein_coding MGP_AJ_T0001820.1 MGP_AJ_G0001735.1 mouse_genomes_project 5 122475155 122476661 + TEC TEC MGP_AJ_T0071913.1 MGP_AJ_G0029546.1 mouse_genomes_project 5 62632867 62656650 - MGP_AJ_P0071913 Ugdh protein_coding protein_coding MGP_AJ_T0071914.1 MGP_AJ_G0029546.1 mouse_genomes_project 5 62632870 62645711 - Ugdh protein_coding retained_intron MGP_AJ_T0071915.1 MGP_AJ_G0029546.1 mouse_genomes_project 5 62637775 62643059 - Ugdh protein_coding retained_intron MGP_AJ_T0071916.1 MGP_AJ_G0029546.1 mouse_genomes_project 5 62643604 62649329 - MGP_AJ_P0071916 Ugdh protein_coding protein_coding MGP_AJ_T0072099.1 MGP_AJ_G0029574.1 mouse_genomes_project 5 68189275 68328830 - MGP_AJ_P0072099 Gabra2 protein_coding protein_coding MGP_AJ_T0072100.1 MGP_AJ_G0029574.1 mouse_genomes_project 5 68191159 68328790 - MGP_AJ_P0072100 Gabra2 protein_coding nonsense_mediated_decay MGP_AJ_T0072101.1 MGP_AJ_G0029574.1 mouse_genomes_project 5 68192645 68247244 - Gabra2 protein_coding retained_intron MGP_AJ_T0072102.1 MGP_AJ_G0029574.1 mouse_genomes_project 5 68192751 68327627 - MGP_AJ_P0072102 Gabra2 protein_coding nonsense_mediated_decay MGP_AJ_T0072103.1 MGP_AJ_G0029574.1 mouse_genomes_project 5 68205095 68328187 - Gabra2 protein_coding processed_transcript MGP_AJ_T0072104.1 MGP_AJ_G0029574.1 mouse_genomes_project 5 68324736 68327852 - Gabra2 protein_coding retained_intron MGP_AJ_T0015046.1 MGP_AJ_G0013141.1 mouse_genomes_project 5 82157709 82158376 - processed_pseudogene processed_pseudogene MGP_AJ_T0014856.1 MGP_AJ_G0012951.1 mouse_genomes_project 5 6195720 6195962 + processed_pseudogene processed_pseudogene MGP_AJ_T0004737.1 MGP_AJ_G0004096.1 mouse_genomes_project 5 94104547 94105902 - Gm33050 antisense antisense MGP_AJ_T0001804.1 MGP_AJ_G0001719.1 mouse_genomes_project 5 120261265 120262455 - TEC TEC MGP_AJ_T0008085.1 MGP_AJ_G0006594.1 mouse_genomes_project 5 26386698 26398488 + 4632411P08Rik lincRNA lincRNA MGP_AJ_T0070915.1 MGP_AJ_G0029382.1 mouse_genomes_project 5 28222424 28228086 + MGP_AJ_P0070915 Snx17 protein_coding protein_coding MGP_AJ_T0070916.1 MGP_AJ_G0029382.1 mouse_genomes_project 5 28222439 28224632 + MGP_AJ_P0070916 Snx17 protein_coding protein_coding MGP_AJ_T0070917.1 MGP_AJ_G0029382.1 mouse_genomes_project 5 28222491 28228080 + MGP_AJ_P0070917 Snx17 protein_coding nonsense_mediated_decay MGP_AJ_T0070918.1 MGP_AJ_G0029382.1 mouse_genomes_project 5 28222503 28228085 + Snx17 protein_coding retained_intron MGP_AJ_T0070919.1 MGP_AJ_G0029382.1 mouse_genomes_project 5 28222503 28226242 + MGP_AJ_P0070919 Snx17 protein_coding protein_coding MGP_AJ_T0070920.1 MGP_AJ_G0029382.1 mouse_genomes_project 5 28222532 28228086 + MGP_AJ_P0070920 Snx17 protein_coding nonsense_mediated_decay MGP_AJ_T0070921.1 MGP_AJ_G0029382.1 mouse_genomes_project 5 28223051 28228329 + Snx17 protein_coding retained_intron MGP_AJ_T0070922.1 MGP_AJ_G0029382.1 mouse_genomes_project 5 28224040 28225620 + Snx17 protein_coding retained_intron MGP_AJ_T0070923.1 MGP_AJ_G0029382.1 mouse_genomes_project 5 28224570 28226436 + Snx17 protein_coding retained_intron MGP_AJ_T0070924.1 MGP_AJ_G0029382.1 mouse_genomes_project 5 28225028 28226896 + Snx17 protein_coding retained_intron MGP_AJ_T0070925.1 MGP_AJ_G0029382.1 mouse_genomes_project 5 28225236 28227330 + Snx17 protein_coding processed_transcript MGP_AJ_T0001668.1 MGP_AJ_G0001584.1 mouse_genomes_project 5 65096548 65100027 - TEC TEC MGP_AJ_T0072558.1 MGP_AJ_G0029669.1 mouse_genomes_project 5 85706057 85720001 + MGP_AJ_P0072558 Gm7714 protein_coding protein_coding MGP_AJ_T0073118.1 MGP_AJ_G0029802.1 mouse_genomes_project 5 105274146 105328877 + MGP_AJ_P0073118 protein_coding protein_coding MGP_AJ_T0073119.1 MGP_AJ_G0029802.1 mouse_genomes_project 5 105274146 105346487 + MGP_AJ_P0073119 protein_coding unknown_likely_coding MGP_AJ_T0073120.1 MGP_AJ_G0029802.1 mouse_genomes_project 5 105288240 105307966 + protein_coding processed_transcript MGP_AJ_T0004833.1 MGP_AJ_G0004161.1 mouse_genomes_project 5 123137827 123140909 - 4930404A12Rik antisense antisense MGP_AJ_T0004834.1 MGP_AJ_G0004161.1 mouse_genomes_project 5 123137828 123140909 - 4930404A12Rik antisense antisense MGP_AJ_T0001660.1 MGP_AJ_G0001576.1 mouse_genomes_project 5 63969974 63971543 + TEC TEC MGP_AJ_T0008201.1 MGP_AJ_G0006680.1 mouse_genomes_project 5 81707368 81711162 + Gm43532 lincRNA lincRNA MGP_AJ_T0070037.1 MGP_AJ_G0029222.1 mouse_genomes_project 5 267450 280226 + MGP_AJ_P0070037 1700109H08Rik protein_coding nonsense_mediated_decay MGP_AJ_T0070038.1 MGP_AJ_G0029222.1 mouse_genomes_project 5 267557 280241 + MGP_AJ_P0070038 1700109H08Rik protein_coding protein_coding MGP_AJ_T0070039.1 MGP_AJ_G0029222.1 mouse_genomes_project 5 271572 280241 + MGP_AJ_P0070039 1700109H08Rik protein_coding protein_coding MGP_AJ_T0070040.1 MGP_AJ_G0029222.1 mouse_genomes_project 5 274107 276334 + 1700109H08Rik protein_coding retained_intron MGP_AJ_T0070041.1 MGP_AJ_G0029222.1 mouse_genomes_project 5 276382 280229 + MGP_AJ_P0070041 1700109H08Rik protein_coding nonsense_mediated_decay MGP_AJ_T0071748.1 MGP_AJ_G0029516.1 mouse_genomes_project 5 49936091 49963998 + MGP_AJ_P0071748 Pi4k2b protein_coding protein_coding MGP_AJ_T0071749.1 MGP_AJ_G0029516.1 mouse_genomes_project 5 49936123 49946051 + MGP_AJ_P0071749 Pi4k2b protein_coding nonsense_mediated_decay MGP_AJ_T0071750.1 MGP_AJ_G0029516.1 mouse_genomes_project 5 49936127 49963998 + MGP_AJ_P0071750 Pi4k2b protein_coding protein_coding MGP_AJ_T0071751.1 MGP_AJ_G0029516.1 mouse_genomes_project 5 49949139 49952020 + Pi4k2b protein_coding retained_intron MGP_AJ_T0074010.1 MGP_AJ_G0029985.1 mouse_genomes_project 5 119200773 119207394 + MGP_AJ_P0074010 Oas1d protein_coding protein_coding MGP_AJ_T0070408.1 MGP_AJ_G0029290.1 mouse_genomes_project 5 18752933 18809785 - MGP_AJ_P0070408 Slc26a5 protein_coding protein_coding MGP_AJ_T0070409.1 MGP_AJ_G0029290.1 mouse_genomes_project 5 18752933 18806182 - MGP_AJ_P0070409 Slc26a5 protein_coding protein_coding MGP_AJ_T0070410.1 MGP_AJ_G0029290.1 mouse_genomes_project 5 18753296 18790642 - MGP_AJ_P0070410 Slc26a5 protein_coding nonsense_mediated_decay MGP_AJ_T0070411.1 MGP_AJ_G0029290.1 mouse_genomes_project 5 18753427 18790594 - MGP_AJ_P0070411 Slc26a5 protein_coding protein_coding MGP_AJ_T0070412.1 MGP_AJ_G0029290.1 mouse_genomes_project 5 18758335 18763152 - Slc26a5 protein_coding retained_intron MGP_AJ_T0072119.1 MGP_AJ_G0029579.1 mouse_genomes_project 5 69515221 69722903 - MGP_AJ_P0072119 Corin protein_coding protein_coding MGP_AJ_T0072120.1 MGP_AJ_G0029579.1 mouse_genomes_project 5 69515222 69722638 - MGP_AJ_P0072120 Corin protein_coding protein_coding MGP_AJ_T0072121.1 MGP_AJ_G0029579.1 mouse_genomes_project 5 69516682 69722863 - MGP_AJ_P0072121 Corin protein_coding protein_coding MGP_AJ_T0072122.1 MGP_AJ_G0029579.1 mouse_genomes_project 5 69516682 69722869 - MGP_AJ_P0072122 Corin protein_coding protein_coding MGP_AJ_T0072123.1 MGP_AJ_G0029579.1 mouse_genomes_project 5 69516694 69722869 - MGP_AJ_P0072123 Corin protein_coding protein_coding MGP_AJ_T0072124.1 MGP_AJ_G0029579.1 mouse_genomes_project 5 69568525 69575645 - Corin protein_coding retained_intron MGP_AJ_T0072125.1 MGP_AJ_G0029579.1 mouse_genomes_project 5 69573329 69595863 - Corin protein_coding processed_transcript MGP_AJ_T0073383.1 MGP_AJ_G0029858.1 mouse_genomes_project 5 108864389 108870682 - MGP_AJ_P0073383 Pus1 protein_coding protein_coding MGP_AJ_T0073384.1 MGP_AJ_G0029858.1 mouse_genomes_project 5 108864390 108871311 - MGP_AJ_P0073384 Pus1 protein_coding protein_coding MGP_AJ_T0073385.1 MGP_AJ_G0029858.1 mouse_genomes_project 5 108864390 108871311 - MGP_AJ_P0073385 Pus1 protein_coding protein_coding MGP_AJ_T0073386.1 MGP_AJ_G0029858.1 mouse_genomes_project 5 108864390 108871374 - MGP_AJ_P0073386 Pus1 protein_coding protein_coding MGP_AJ_T0073387.1 MGP_AJ_G0029858.1 mouse_genomes_project 5 108864391 108871330 - MGP_AJ_P0073387 Pus1 protein_coding protein_coding MGP_AJ_T0073388.1 MGP_AJ_G0029858.1 mouse_genomes_project 5 108866259 108870861 - MGP_AJ_P0073388 Pus1 protein_coding protein_coding MGP_AJ_T0073389.1 MGP_AJ_G0029858.1 mouse_genomes_project 5 108866268 108871306 - MGP_AJ_P0073389 Pus1 protein_coding protein_coding MGP_AJ_T0014934.1 MGP_AJ_G0013029.1 mouse_genomes_project 5 30194651 30194866 + processed_pseudogene processed_pseudogene MGP_AJ_T0008194.1 MGP_AJ_G0006676.1 mouse_genomes_project 5 74704784 74748349 + Gm34728 lincRNA lincRNA MGP_AJ_T0072135.1 MGP_AJ_G0029581.1 mouse_genomes_project 5 69815492 69817986 - Zar1 protein_coding retained_intron MGP_AJ_T0072136.1 MGP_AJ_G0029581.1 mouse_genomes_project 5 69815800 69819810 - MGP_AJ_P0072136 Zar1 protein_coding protein_coding MGP_AJ_T0072137.1 MGP_AJ_G0029581.1 mouse_genomes_project 5 69815803 69819310 - MGP_AJ_P0072137 Zar1 protein_coding protein_coding MGP_AJ_T0014843.1 MGP_AJ_G0012938.1 mouse_genomes_project 5 117451 117622 + processed_pseudogene processed_pseudogene MGP_AJ_T0001721.1 MGP_AJ_G0001636.1 mouse_genomes_project 5 94442903 94445049 + TEC TEC MGP_AJ_T0073749.1 MGP_AJ_G0029933.1 mouse_genomes_project 5 113598078 113617340 + Msi1 protein_coding retained_intron MGP_AJ_T0073750.1 MGP_AJ_G0029933.1 mouse_genomes_project 5 113598127 113624072 + MGP_AJ_P0073750 Msi1 protein_coding protein_coding MGP_AJ_T0073751.1 MGP_AJ_G0029933.1 mouse_genomes_project 5 113598983 113619277 + MGP_AJ_P0073751 Msi1 protein_coding protein_coding MGP_AJ_T0073752.1 MGP_AJ_G0029933.1 mouse_genomes_project 5 113601774 113604012 + Msi1 protein_coding retained_intron MGP_AJ_T0073753.1 MGP_AJ_G0029933.1 mouse_genomes_project 5 113602107 113619270 + Msi1 protein_coding retained_intron MGP_AJ_T0073754.1 MGP_AJ_G0029933.1 mouse_genomes_project 5 113602656 113613865 + Msi1 protein_coding retained_intron MGP_AJ_T0073755.1 MGP_AJ_G0029933.1 mouse_genomes_project 5 113603356 113619254 + MGP_AJ_P0073755 Msi1 protein_coding protein_coding MGP_AJ_T0073756.1 MGP_AJ_G0029933.1 mouse_genomes_project 5 113603858 113614087 + Msi1 protein_coding retained_intron MGP_AJ_T0008444.1 MGP_AJ_G0006846.1 mouse_genomes_project 5 142719748 142722767 + D130017N08Rik lincRNA lincRNA MGP_AJ_T0070721.1 MGP_AJ_G0029351.1 mouse_genomes_project 5 27200213 27231343 + MGP_AJ_P0070721 Hadhb protein_coding protein_coding MGP_AJ_T0070722.1 MGP_AJ_G0029351.1 mouse_genomes_project 5 27200223 27220553 + MGP_AJ_P0070722 Hadhb protein_coding protein_coding MGP_AJ_T0070723.1 MGP_AJ_G0029351.1 mouse_genomes_project 5 27200237 27231336 + MGP_AJ_P0070723 Hadhb protein_coding protein_coding MGP_AJ_T0070724.1 MGP_AJ_G0029351.1 mouse_genomes_project 5 27200237 27231332 + MGP_AJ_P0070724 Hadhb protein_coding protein_coding MGP_AJ_T0070725.1 MGP_AJ_G0029351.1 mouse_genomes_project 5 27200240 27213508 + Hadhb protein_coding retained_intron MGP_AJ_T0070726.1 MGP_AJ_G0029351.1 mouse_genomes_project 5 27200268 27222491 + MGP_AJ_P0070726 Hadhb protein_coding nonsense_mediated_decay MGP_AJ_T0070727.1 MGP_AJ_G0029351.1 mouse_genomes_project 5 27220557 27224758 + Hadhb protein_coding retained_intron MGP_AJ_T0070728.1 MGP_AJ_G0029351.1 mouse_genomes_project 5 27224224 27226846 + Hadhb protein_coding retained_intron MGP_AJ_T0070729.1 MGP_AJ_G0029351.1 mouse_genomes_project 5 27226102 27230628 + Hadhb protein_coding retained_intron MGP_AJ_T0073421.1 MGP_AJ_G0029864.1 mouse_genomes_project 5 109504341 109505053 + Mn1 protein_coding processed_transcript MGP_AJ_T0073422.1 MGP_AJ_G0029864.1 mouse_genomes_project 5 109504421 109544189 + MGP_AJ_P0073422 Mn1 protein_coding protein_coding MGP_AJ_T0072852.1 MGP_AJ_G0029744.1 mouse_genomes_project 5 96887386 96922890 - MGP_AJ_P0072852 protein_coding protein_coding MGP_AJ_T0072853.1 MGP_AJ_G0029744.1 mouse_genomes_project 5 96887386 96922890 - MGP_AJ_P0072853 protein_coding protein_coding MGP_AJ_T0072854.1 MGP_AJ_G0029744.1 mouse_genomes_project 5 96888734 96913204 - MGP_AJ_P0072854 protein_coding protein_coding MGP_AJ_T0072855.1 MGP_AJ_G0029744.1 mouse_genomes_project 5 96897754 96904031 - protein_coding retained_intron MGP_AJ_T0008143.1 MGP_AJ_G0006635.1 mouse_genomes_project 5 49797730 49809198 - 8030423F21Rik lincRNA lincRNA MGP_AJ_T0072554.1 MGP_AJ_G0029666.1 mouse_genomes_project 5 85350316 85356564 + MGP_AJ_P0072554 Smr3a protein_coding protein_coding MGP_AJ_T0072555.1 MGP_AJ_G0029666.1 mouse_genomes_project 5 85350320 85356567 + MGP_AJ_P0072555 Smr3a protein_coding protein_coding MGP_AJ_T0010674.1 MGP_AJ_G0008796.1 mouse_genomes_project 5 39120929 39121011 + Mir6414 miRNA miRNA MGP_AJ_T0072709.1 MGP_AJ_G0029713.1 mouse_genomes_project 5 89749802 89776393 - MGP_AJ_P0072709 Sdad1 protein_coding protein_coding MGP_AJ_T0072710.1 MGP_AJ_G0029713.1 mouse_genomes_project 5 89752533 89776263 - MGP_AJ_P0072710 Sdad1 protein_coding protein_coding MGP_AJ_T0072711.1 MGP_AJ_G0029713.1 mouse_genomes_project 5 89756698 89761966 - Sdad1 protein_coding retained_intron MGP_AJ_T0072712.1 MGP_AJ_G0029713.1 mouse_genomes_project 5 89757524 89766712 - Sdad1 protein_coding retained_intron MGP_AJ_T0072713.1 MGP_AJ_G0029713.1 mouse_genomes_project 5 89768013 89776358 - Sdad1 protein_coding retained_intron MGP_AJ_T0072714.1 MGP_AJ_G0029713.1 mouse_genomes_project 5 89770022 89771028 - Sdad1 protein_coding retained_intron MGP_AJ_T0072715.1 MGP_AJ_G0029713.1 mouse_genomes_project 5 89772103 89776848 - MGP_AJ_P0072715 Sdad1 protein_coding protein_coding MGP_AJ_T0101291.1 MGP_AJ_G0039257.1 mouse_genomes_project 5 65808706 65808833 - Gm23605 snoRNA snoRNA MGP_AJ_T0014983.1 MGP_AJ_G0013078.1 mouse_genomes_project 5 53321958 53322271 + processed_pseudogene processed_pseudogene MGP_AJ_T0099039.1 MGP_AJ_G0037016.1 mouse_genomes_project 5 27374021 27374466 + Gm43755 sense_intronic sense_intronic MGP_AJ_T0001526.1 MGP_AJ_G0001444.1 mouse_genomes_project 5 40750121 40752226 + TEC TEC MGP_AJ_T0015031.1 MGP_AJ_G0013126.1 mouse_genomes_project 5 73327032 73327382 - processed_pseudogene processed_pseudogene MGP_AJ_T0075615.1 MGP_AJ_G0030271.1 mouse_genomes_project 5 139488508 139498407 + MGP_AJ_P0075615 Lfng protein_coding protein_coding MGP_AJ_T0075616.1 MGP_AJ_G0030271.1 mouse_genomes_project 5 139494370 139496194 + Lfng protein_coding processed_transcript MGP_AJ_T0075617.1 MGP_AJ_G0030271.1 mouse_genomes_project 5 139494546 139497536 + Lfng protein_coding retained_intron MGP_AJ_T0073325.1 MGP_AJ_G0029848.1 mouse_genomes_project 5 108338948 108350653 - MGP_AJ_P0073325 Pgam5 protein_coding protein_coding MGP_AJ_T0073326.1 MGP_AJ_G0029848.1 mouse_genomes_project 5 108338974 108350627 - MGP_AJ_P0073326 Pgam5 protein_coding protein_coding MGP_AJ_T0073327.1 MGP_AJ_G0029848.1 mouse_genomes_project 5 108345922 108346721 - Pgam5 protein_coding retained_intron MGP_AJ_T0073328.1 MGP_AJ_G0029848.1 mouse_genomes_project 5 108346267 108350594 - MGP_AJ_P0073328 Pgam5 protein_coding protein_coding MGP_AJ_T0014976.1 MGP_AJ_G0013071.1 mouse_genomes_project 5 51766653 51774483 + processed_pseudogene processed_pseudogene MGP_AJ_T0072170.1 MGP_AJ_G0029588.1 mouse_genomes_project 5 70247826 70264205 + MGP_AJ_P0072170 protein_coding protein_coding MGP_AJ_T0100018.1 MGP_AJ_G0037984.1 mouse_genomes_project 5 69520558 69520656 - Gm25768 snRNA snRNA MGP_AJ_T0072847.1 MGP_AJ_G0029743.1 mouse_genomes_project 5 96599523 96707231 - MGP_AJ_P0072847 Prkg2 protein_coding protein_coding MGP_AJ_T0072848.1 MGP_AJ_G0029743.1 mouse_genomes_project 5 96600996 96613534 - MGP_AJ_P0072848 Prkg2 protein_coding protein_coding MGP_AJ_T0072849.1 MGP_AJ_G0029743.1 mouse_genomes_project 5 96600996 96613532 - MGP_AJ_P0072849 Prkg2 protein_coding protein_coding MGP_AJ_T0072850.1 MGP_AJ_G0029743.1 mouse_genomes_project 5 96601448 96706955 - MGP_AJ_P0072850 Prkg2 protein_coding protein_coding MGP_AJ_T0072851.1 MGP_AJ_G0029743.1 mouse_genomes_project 5 96617080 96636530 - Prkg2 protein_coding retained_intron MGP_AJ_T0008420.1 MGP_AJ_G0006827.1 mouse_genomes_project 5 135489169 135507153 + 4933404O12Rik lincRNA lincRNA MGP_AJ_T0008421.1 MGP_AJ_G0006827.1 mouse_genomes_project 5 135489204 135503801 + 4933404O12Rik lincRNA lincRNA MGP_AJ_T0008422.1 MGP_AJ_G0006827.1 mouse_genomes_project 5 135489375 135503720 + 4933404O12Rik lincRNA lincRNA MGP_AJ_T0008423.1 MGP_AJ_G0006827.1 mouse_genomes_project 5 135489424 135507159 + 4933404O12Rik lincRNA lincRNA MGP_AJ_T0001699.1 MGP_AJ_G0001614.1 mouse_genomes_project 5 71832372 71833703 + TEC TEC MGP_AJ_T0075695.1 MGP_AJ_G0030288.1 mouse_genomes_project 5 141836297 141840735 - MGP_AJ_P0075695 Actb protein_coding protein_coding MGP_AJ_T0075696.1 MGP_AJ_G0030288.1 mouse_genomes_project 5 141837635 141840683 - MGP_AJ_P0075696 Actb protein_coding protein_coding MGP_AJ_T0075697.1 MGP_AJ_G0030288.1 mouse_genomes_project 5 141838331 141839802 - MGP_AJ_P0075697 Actb protein_coding protein_coding MGP_AJ_T0075698.1 MGP_AJ_G0030288.1 mouse_genomes_project 5 141838375 141840706 - Actb protein_coding processed_transcript MGP_AJ_T0075699.1 MGP_AJ_G0030288.1 mouse_genomes_project 5 141838652 141840703 - MGP_AJ_P0075699 Actb protein_coding protein_coding MGP_AJ_T0075700.1 MGP_AJ_G0030288.1 mouse_genomes_project 5 141838685 141839918 - MGP_AJ_P0075700 Actb protein_coding protein_coding MGP_AJ_T0075701.1 MGP_AJ_G0030288.1 mouse_genomes_project 5 141838746 141840653 - Actb protein_coding retained_intron MGP_AJ_T0075702.1 MGP_AJ_G0030288.1 mouse_genomes_project 5 141838853 141840675 - Actb protein_coding retained_intron MGP_AJ_T0004652.1 MGP_AJ_G0004027.1 mouse_genomes_project 5 24561741 24563066 - Gm16058 antisense antisense MGP_AJ_T0073512.1 MGP_AJ_G0029884.1 mouse_genomes_project 5 111727555 111765573 - MGP_AJ_P0073512 Cmklr1 protein_coding protein_coding MGP_AJ_T0073513.1 MGP_AJ_G0029884.1 mouse_genomes_project 5 111729197 111742764 - MGP_AJ_P0073513 Cmklr1 protein_coding protein_coding MGP_AJ_T0073514.1 MGP_AJ_G0029884.1 mouse_genomes_project 5 111730088 111758752 - MGP_AJ_P0073514 Cmklr1 protein_coding protein_coding MGP_AJ_T0073515.1 MGP_AJ_G0029884.1 mouse_genomes_project 5 111746454 111765543 - Cmklr1 protein_coding processed_transcript MGP_AJ_T0008470.1 MGP_AJ_G0006868.1 mouse_genomes_project 5 148388500 148389544 + Gm43332 lincRNA lincRNA MGP_AJ_T0004643.1 MGP_AJ_G0004019.1 mouse_genomes_project 5 18855030 18900397 + Gm10475 antisense antisense MGP_AJ_T0001882.1 MGP_AJ_G0001795.1 mouse_genomes_project 5 134168243 134171716 - TEC TEC MGP_AJ_T0072837.1 MGP_AJ_G0029739.1 mouse_genomes_project 5 95914455 95938318 + MGP_AJ_P0072837 Fgf5 protein_coding protein_coding MGP_AJ_T0072838.1 MGP_AJ_G0029739.1 mouse_genomes_project 5 95914685 95936757 + MGP_AJ_P0072838 Fgf5 protein_coding protein_coding MGP_AJ_T0008258.1 MGP_AJ_G0006724.1 mouse_genomes_project 5 103217441 103222059 + Gm42749 lincRNA lincRNA MGP_AJ_T0008259.1 MGP_AJ_G0006724.1 mouse_genomes_project 5 103221432 103223817 + Gm42749 lincRNA lincRNA MGP_AJ_T0072565.1 MGP_AJ_G0029674.1 mouse_genomes_project 5 85978774 85985610 - Jchain protein_coding retained_intron MGP_AJ_T0072566.1 MGP_AJ_G0029674.1 mouse_genomes_project 5 85980284 85986996 - MGP_AJ_P0072566 Jchain protein_coding unknown_likely_coding MGP_AJ_T0015010.1 MGP_AJ_G0013105.1 mouse_genomes_project 5 63606810 63607078 + processed_pseudogene processed_pseudogene MGP_AJ_T0008361.1 MGP_AJ_G0006793.1 mouse_genomes_project 5 121567179 121571563 - AI480526 lincRNA lincRNA MGP_AJ_T0008363.1 MGP_AJ_G0006793.1 mouse_genomes_project 5 121567745 121572799 - AI480526 lincRNA lincRNA MGP_AJ_T0008364.1 MGP_AJ_G0006793.1 mouse_genomes_project 5 121567916 121574521 - AI480526 lincRNA lincRNA MGP_AJ_T0008365.1 MGP_AJ_G0006793.1 mouse_genomes_project 5 121568296 121575111 - AI480526 lincRNA lincRNA MGP_AJ_T0008367.1 MGP_AJ_G0006793.1 mouse_genomes_project 5 121569679 121574534 - AI480526 lincRNA lincRNA MGP_AJ_T0008368.1 MGP_AJ_G0006793.1 mouse_genomes_project 5 121570924 121573741 - AI480526 lincRNA lincRNA MGP_AJ_T0008369.1 MGP_AJ_G0006793.1 mouse_genomes_project 5 121571496 121574512 - AI480526 lincRNA lincRNA MGP_AJ_T0102633.1 MGP_AJ_G0040375.1 mouse_genomes_project 5 84129323 84132293 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0001846.1 MGP_AJ_G0001760.1 mouse_genomes_project 5 129431066 129432179 - TEC TEC MGP_AJ_T0001594.1 MGP_AJ_G0001511.1 mouse_genomes_project 5 49251332 49253777 - TEC TEC MGP_AJ_T0100064.1 MGP_AJ_G0038030.1 mouse_genomes_project 5 140465813 140465920 - Gm24131 snRNA snRNA MGP_AJ_T0004642.1 MGP_AJ_G0004018.1 mouse_genomes_project 5 17892467 17897867 + A630072M18Rik antisense antisense MGP_AJ_T0001793.1 MGP_AJ_G0001708.1 mouse_genomes_project 5 117813326 117815700 - TEC TEC MGP_AJ_T0070700.1 MGP_AJ_G0029346.1 mouse_genomes_project 5 27047322 27054083 + MGP_AJ_P0070700 Il6 protein_coding protein_coding MGP_AJ_T0070701.1 MGP_AJ_G0029346.1 mouse_genomes_project 5 27047370 27053650 + MGP_AJ_P0070701 Il6 protein_coding protein_coding MGP_AJ_T0074221.1 MGP_AJ_G0030019.1 mouse_genomes_project 5 120960409 121025019 - MGP_AJ_P0074221 Ift81 protein_coding protein_coding MGP_AJ_T0074222.1 MGP_AJ_G0030019.1 mouse_genomes_project 5 120960413 120971571 - Ift81 protein_coding retained_intron MGP_AJ_T0074223.1 MGP_AJ_G0030019.1 mouse_genomes_project 5 120979647 120984846 - Ift81 protein_coding processed_transcript MGP_AJ_T0074224.1 MGP_AJ_G0030019.1 mouse_genomes_project 5 121001805 121014031 - MGP_AJ_P0074224 Ift81 protein_coding protein_coding MGP_AJ_T0074225.1 MGP_AJ_G0030019.1 mouse_genomes_project 5 121012716 121025007 - Ift81 protein_coding retained_intron MGP_AJ_T0074226.1 MGP_AJ_G0030019.1 mouse_genomes_project 5 121012846 121024946 - MGP_AJ_P0074226 Ift81 protein_coding protein_coding MGP_AJ_T0074227.1 MGP_AJ_G0030019.1 mouse_genomes_project 5 121012881 121025002 - MGP_AJ_P0074227 Ift81 protein_coding nonsense_mediated_decay MGP_AJ_T0074228.1 MGP_AJ_G0030019.1 mouse_genomes_project 5 121015443 121017889 - Ift81 protein_coding retained_intron MGP_AJ_T0074229.1 MGP_AJ_G0030019.1 mouse_genomes_project 5 121017552 121025017 - MGP_AJ_P0074229 Ift81 protein_coding nonsense_mediated_decay MGP_AJ_T0099997.1 MGP_AJ_G0037963.1 mouse_genomes_project 5 27528106 27528213 - Gm25666 snRNA snRNA MGP_AJ_T0102652.1 MGP_AJ_G0040394.1 mouse_genomes_project 5 142074220 142075159 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0014927.1 MGP_AJ_G0013022.1 mouse_genomes_project 5 26860578 26861798 - processed_pseudogene processed_pseudogene MGP_AJ_T0001641.1 MGP_AJ_G0001557.1 mouse_genomes_project 5 62903509 62905845 - TEC TEC MGP_AJ_T0015155.1 MGP_AJ_G0013250.1 mouse_genomes_project 5 128643525 128643927 + processed_pseudogene processed_pseudogene MGP_AJ_T0099990.1 MGP_AJ_G0037956.1 mouse_genomes_project 5 17198056 17198156 + Gm22755 snRNA snRNA MGP_AJ_T0015015.1 MGP_AJ_G0013110.1 mouse_genomes_project 5 66708456 66709048 + processed_pseudogene processed_pseudogene MGP_AJ_T0018138.1 MGP_AJ_G0015573.1 mouse_genomes_project 5 47597519 47695604 - Gm36814 processed_transcript lincRNA MGP_AJ_T0018139.1 MGP_AJ_G0015573.1 mouse_genomes_project 5 47677895 47694648 - Gm36814 processed_transcript retained_intron MGP_AJ_T0072580.1 MGP_AJ_G0029678.1 mouse_genomes_project 5 86190725 86220302 + Mob1b protein_coding retained_intron MGP_AJ_T0072581.1 MGP_AJ_G0029678.1 mouse_genomes_project 5 86190725 86235063 + MGP_AJ_P0072581 Mob1b protein_coding protein_coding MGP_AJ_T0072582.1 MGP_AJ_G0029678.1 mouse_genomes_project 5 86190741 86228832 + MGP_AJ_P0072582 Mob1b protein_coding protein_coding MGP_AJ_T0072583.1 MGP_AJ_G0029678.1 mouse_genomes_project 5 86190847 86221017 + Mob1b protein_coding retained_intron MGP_AJ_T0015075.1 MGP_AJ_G0013170.1 mouse_genomes_project 5 93836041 93836452 + processed_pseudogene processed_pseudogene MGP_AJ_T0100068.1 MGP_AJ_G0038034.1 mouse_genomes_project 5 149954190 149954296 + Gm24630 snRNA snRNA MGP_AJ_T0072543.1 MGP_AJ_G0029661.1 mouse_genomes_project 5 85226132 85235802 + MGP_AJ_P0072543 Odam protein_coding protein_coding MGP_AJ_T0072544.1 MGP_AJ_G0029661.1 mouse_genomes_project 5 85226798 85234373 + MGP_AJ_P0072544 Odam protein_coding protein_coding MGP_AJ_T0073105.1 MGP_AJ_G0029798.1 mouse_genomes_project 5 104931387 105122054 - MGP_AJ_P0073105 Tgfbr3 protein_coding protein_coding MGP_AJ_T0073106.1 MGP_AJ_G0029798.1 mouse_genomes_project 5 104934098 105023185 - Tgfbr3 protein_coding processed_transcript MGP_AJ_T0073107.1 MGP_AJ_G0029798.1 mouse_genomes_project 5 104943030 104957758 - MGP_AJ_P0073107 Tgfbr3 protein_coding protein_coding MGP_AJ_T0073108.1 MGP_AJ_G0029798.1 mouse_genomes_project 5 104972832 105122020 - Tgfbr3 protein_coding retained_intron MGP_AJ_T0004709.1 MGP_AJ_G0004072.1 mouse_genomes_project 5 64251021 64253496 - Gm15948 antisense antisense MGP_AJ_T0001459.1 MGP_AJ_G0001380.1 mouse_genomes_project 5 11469194 11472098 + TEC TEC MGP_AJ_T0008462.1 MGP_AJ_G0006862.1 mouse_genomes_project 5 148150195 148152603 + Gm15409 lincRNA lincRNA MGP_AJ_T0004861.1 MGP_AJ_G0004183.1 mouse_genomes_project 5 136093454 136101747 + Gm17112 antisense antisense MGP_AJ_T0070438.1 MGP_AJ_G0029295.1 mouse_genomes_project 5 20409385 20478968 + MGP_AJ_P0070438 Kmt2e protein_coding protein_coding MGP_AJ_T0070439.1 MGP_AJ_G0029295.1 mouse_genomes_project 5 20409385 20461150 + MGP_AJ_P0070439 Kmt2e protein_coding nonsense_mediated_decay MGP_AJ_T0070440.1 MGP_AJ_G0029295.1 mouse_genomes_project 5 20409393 20478968 + MGP_AJ_P0070440 Kmt2e protein_coding protein_coding MGP_AJ_T0070441.1 MGP_AJ_G0029295.1 mouse_genomes_project 5 20453304 20460201 + Kmt2e protein_coding processed_transcript MGP_AJ_T0070442.1 MGP_AJ_G0029295.1 mouse_genomes_project 5 20460250 20470958 + MGP_AJ_P0070442 Kmt2e protein_coding nonsense_mediated_decay MGP_AJ_T0070443.1 MGP_AJ_G0029295.1 mouse_genomes_project 5 20460298 20477594 + MGP_AJ_P0070443 Kmt2e protein_coding protein_coding MGP_AJ_T0070444.1 MGP_AJ_G0029295.1 mouse_genomes_project 5 20467170 20475237 + MGP_AJ_P0070444 Kmt2e protein_coding nonsense_mediated_decay MGP_AJ_T0070445.1 MGP_AJ_G0029295.1 mouse_genomes_project 5 20467707 20471108 + Kmt2e protein_coding retained_intron MGP_AJ_T0070446.1 MGP_AJ_G0029295.1 mouse_genomes_project 5 20473018 20475280 + MGP_AJ_P0070446 Kmt2e protein_coding nonsense_mediated_decay MGP_AJ_T0008128.1 MGP_AJ_G0006622.1 mouse_genomes_project 5 40637904 40642066 + Gm43021 lincRNA lincRNA MGP_AJ_T0074564.1 MGP_AJ_G0030069.1 mouse_genomes_project 5 123140914 123255991 + MGP_AJ_P0074564 Dnah10 protein_coding protein_coding MGP_AJ_T0074565.1 MGP_AJ_G0030069.1 mouse_genomes_project 5 123140914 123255996 + MGP_AJ_P0074565 Dnah10 protein_coding protein_coding MGP_AJ_T0074566.1 MGP_AJ_G0030069.1 mouse_genomes_project 5 123206502 123206933 + Dnah10 protein_coding processed_transcript MGP_AJ_T0074567.1 MGP_AJ_G0030069.1 mouse_genomes_project 5 123211322 123215824 + Dnah10 protein_coding processed_transcript MGP_AJ_T0074568.1 MGP_AJ_G0030069.1 mouse_genomes_project 5 123220952 123224176 + Dnah10 protein_coding retained_intron MGP_AJ_T0074569.1 MGP_AJ_G0030069.1 mouse_genomes_project 5 123224827 123255813 + Dnah10 protein_coding retained_intron MGP_AJ_T0102648.1 MGP_AJ_G0040390.1 mouse_genomes_project 5 135570286 135572189 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0001900.1 MGP_AJ_G0001813.1 mouse_genomes_project 5 144250976 144255474 + TEC TEC MGP_AJ_T0070812.1 MGP_AJ_G0029365.1 mouse_genomes_project 5 27927864 27929768 - MGP_AJ_P0070812 Ost4 protein_coding protein_coding MGP_AJ_T0070813.1 MGP_AJ_G0029365.1 mouse_genomes_project 5 27928497 27929705 - MGP_AJ_P0070813 Ost4 protein_coding protein_coding MGP_AJ_T0073270.1 MGP_AJ_G0029831.1 mouse_genomes_project 5 106996950 107011197 - MGP_AJ_P0073270 protein_coding protein_coding MGP_AJ_T0001441.1 MGP_AJ_G0001362.1 mouse_genomes_project 5 5364637 5367035 - TEC TEC MGP_AJ_T0073161.1 MGP_AJ_G0029810.1 mouse_genomes_project 5 105667951 105669629 + MGP_AJ_P0073161 Ube2d2b protein_coding protein_coding MGP_AJ_T0008193.1 MGP_AJ_G0006675.1 mouse_genomes_project 5 74401901 74403683 - Gm42757 lincRNA lincRNA MGP_AJ_T0075457.1 MGP_AJ_G0030238.1 mouse_genomes_project 5 137272576 137291620 + MGP_AJ_P0075457 Zfp157 protein_coding protein_coding MGP_AJ_T0075458.1 MGP_AJ_G0030238.1 mouse_genomes_project 5 137272587 137279127 + Zfp157 protein_coding retained_intron MGP_AJ_T0075459.1 MGP_AJ_G0030238.1 mouse_genomes_project 5 137272615 137278203 + Zfp157 protein_coding retained_intron MGP_AJ_T0075460.1 MGP_AJ_G0030238.1 mouse_genomes_project 5 137272619 137279171 + Zfp157 protein_coding retained_intron MGP_AJ_T0075461.1 MGP_AJ_G0030238.1 mouse_genomes_project 5 137272627 137287265 + MGP_AJ_P0075461 Zfp157 protein_coding protein_coding MGP_AJ_T0075462.1 MGP_AJ_G0030238.1 mouse_genomes_project 5 137272648 137287277 + MGP_AJ_P0075462 Zfp157 protein_coding protein_coding MGP_AJ_T0071800.1 MGP_AJ_G0029524.1 mouse_genomes_project 5 51024560 51060581 + MGP_AJ_P0071800 Tbc1d19 protein_coding nonsense_mediated_decay MGP_AJ_T0071801.1 MGP_AJ_G0029524.1 mouse_genomes_project 5 51024581 51121651 + MGP_AJ_P0071801 Tbc1d19 protein_coding protein_coding MGP_AJ_T0071802.1 MGP_AJ_G0029524.1 mouse_genomes_project 5 51024602 51051686 + Tbc1d19 protein_coding processed_transcript MGP_AJ_T0071803.1 MGP_AJ_G0029524.1 mouse_genomes_project 5 51024603 51045992 + Tbc1d19 protein_coding retained_intron MGP_AJ_T0071804.1 MGP_AJ_G0029524.1 mouse_genomes_project 5 51024608 51121649 + MGP_AJ_P0071804 Tbc1d19 protein_coding nonsense_mediated_decay MGP_AJ_T0071805.1 MGP_AJ_G0029524.1 mouse_genomes_project 5 51024633 51053225 + MGP_AJ_P0071805 Tbc1d19 protein_coding nonsense_mediated_decay MGP_AJ_T0071806.1 MGP_AJ_G0029524.1 mouse_genomes_project 5 51047822 51053167 + Tbc1d19 protein_coding retained_intron MGP_AJ_T0071807.1 MGP_AJ_G0029524.1 mouse_genomes_project 5 51051675 51064287 + Tbc1d19 protein_coding processed_transcript MGP_AJ_T0071808.1 MGP_AJ_G0029524.1 mouse_genomes_project 5 51108785 51121424 + Tbc1d19 protein_coding processed_transcript MGP_AJ_T0071437.1 MGP_AJ_G0029463.1 mouse_genomes_project 5 34146146 34171141 - MGP_AJ_P0071437 Wfs1 protein_coding protein_coding MGP_AJ_T0071438.1 MGP_AJ_G0029463.1 mouse_genomes_project 5 34146149 34170869 - MGP_AJ_P0071438 Wfs1 protein_coding protein_coding MGP_AJ_T0071439.1 MGP_AJ_G0029463.1 mouse_genomes_project 5 34148569 34157057 - MGP_AJ_P0071439 Wfs1 protein_coding nonsense_mediated_decay MGP_AJ_T0015025.1 MGP_AJ_G0013120.1 mouse_genomes_project 5 72135624 72136563 + processed_pseudogene processed_pseudogene MGP_AJ_T0099038.1 MGP_AJ_G0037015.1 mouse_genomes_project 5 20643088 20643896 - Gm43566 sense_intronic sense_intronic MGP_AJ_T0099135.1 MGP_AJ_G0037102.1 mouse_genomes_project 5 121972285 121977920 + Gm15751 sense_overlapping sense_overlapping MGP_AJ_T0072669.1 MGP_AJ_G0029705.1 mouse_genomes_project 5 89406736 89420372 - Rchy1 protein_coding processed_transcript MGP_AJ_T0072670.1 MGP_AJ_G0029705.1 mouse_genomes_project 5 89406736 89420884 - MGP_AJ_P0072670 Rchy1 protein_coding protein_coding MGP_AJ_T0072671.1 MGP_AJ_G0029705.1 mouse_genomes_project 5 89406833 89420551 - MGP_AJ_P0072671 Rchy1 protein_coding protein_coding MGP_AJ_T0072672.1 MGP_AJ_G0029705.1 mouse_genomes_project 5 89409686 89411587 - Rchy1 protein_coding retained_intron MGP_AJ_T0072673.1 MGP_AJ_G0029705.1 mouse_genomes_project 5 89419496 89420542 - Rchy1 protein_coding retained_intron MGP_AJ_T0001849.1 MGP_AJ_G0001763.1 mouse_genomes_project 5 130078973 130080270 - TEC TEC MGP_AJ_T0001571.1 MGP_AJ_G0001488.1 mouse_genomes_project 5 46180172 46181467 - TEC TEC MGP_AJ_T0001696.1 MGP_AJ_G0001611.1 mouse_genomes_project 5 71507241 71507710 - TEC TEC MGP_AJ_T0074896.1 MGP_AJ_G0030127.1 mouse_genomes_project 5 133098119 133107945 + Rfc2 protein_coding processed_transcript MGP_AJ_T0074897.1 MGP_AJ_G0030127.1 mouse_genomes_project 5 133099445 133120233 + MGP_AJ_P0074897 Rfc2 protein_coding protein_coding MGP_AJ_T0074898.1 MGP_AJ_G0030127.1 mouse_genomes_project 5 133099512 133108382 + Rfc2 protein_coding retained_intron MGP_AJ_T0074899.1 MGP_AJ_G0030127.1 mouse_genomes_project 5 133108267 133114703 + MGP_AJ_P0074899 Rfc2 protein_coding nonsense_mediated_decay MGP_AJ_T0074900.1 MGP_AJ_G0030127.1 mouse_genomes_project 5 133109453 133112060 + Rfc2 protein_coding retained_intron MGP_AJ_T0074901.1 MGP_AJ_G0030127.1 mouse_genomes_project 5 133110866 133115076 + Rfc2 protein_coding retained_intron MGP_AJ_T0070401.1 MGP_AJ_G0029288.1 mouse_genomes_project 5 18700075 18727454 - MGP_AJ_P0070401 Dnajc2 protein_coding protein_coding MGP_AJ_T0070402.1 MGP_AJ_G0029288.1 mouse_genomes_project 5 18700077 18727322 - MGP_AJ_P0070402 Dnajc2 protein_coding protein_coding MGP_AJ_T0070403.1 MGP_AJ_G0029288.1 mouse_genomes_project 5 18700084 18727440 - Dnajc2 protein_coding retained_intron MGP_AJ_T0070404.1 MGP_AJ_G0029288.1 mouse_genomes_project 5 18709188 18711184 - Dnajc2 protein_coding retained_intron MGP_AJ_T0070405.1 MGP_AJ_G0029288.1 mouse_genomes_project 5 18714414 18727424 - Dnajc2 protein_coding retained_intron MGP_AJ_T0070406.1 MGP_AJ_G0029288.1 mouse_genomes_project 5 18715399 18727455 - MGP_AJ_P0070406 Dnajc2 protein_coding protein_coding MGP_AJ_T0099057.1 MGP_AJ_G0037033.1 mouse_genomes_project 5 129598867 129603558 - Gm43166 sense_intronic sense_intronic MGP_AJ_T0074094.1 MGP_AJ_G0030001.1 mouse_genomes_project 5 120044942 120095944 + MGP_AJ_P0074094 Brap protein_coding nonsense_mediated_decay MGP_AJ_T0074095.1 MGP_AJ_G0030001.1 mouse_genomes_project 5 120044969 120048359 + Brap protein_coding retained_intron MGP_AJ_T0074096.1 MGP_AJ_G0030001.1 mouse_genomes_project 5 120045135 120095950 + MGP_AJ_P0074096 Brap protein_coding protein_coding MGP_AJ_T0074097.1 MGP_AJ_G0030001.1 mouse_genomes_project 5 120046420 120061555 + MGP_AJ_P0074097 Brap protein_coding nonsense_mediated_decay MGP_AJ_T0074098.1 MGP_AJ_G0030001.1 mouse_genomes_project 5 120046429 120050465 + MGP_AJ_P0074098 Brap protein_coding protein_coding MGP_AJ_T0074099.1 MGP_AJ_G0030001.1 mouse_genomes_project 5 120046459 120048091 + Brap protein_coding retained_intron MGP_AJ_T0074100.1 MGP_AJ_G0030001.1 mouse_genomes_project 5 120051353 120095949 + Brap protein_coding processed_transcript MGP_AJ_T0074101.1 MGP_AJ_G0030001.1 mouse_genomes_project 5 120090805 120095946 + Brap protein_coding retained_intron MGP_AJ_T0100059.1 MGP_AJ_G0038025.1 mouse_genomes_project 5 129251415 129251519 + Gm23761 snRNA snRNA MGP_AJ_T0001695.1 MGP_AJ_G0001610.1 mouse_genomes_project 5 71430359 71434253 - TEC TEC MGP_AJ_T0004795.1 MGP_AJ_G0004136.1 mouse_genomes_project 5 115304912 115308369 + 9530046B11Rik antisense antisense MGP_AJ_T0001589.1 MGP_AJ_G0001506.1 mouse_genomes_project 5 48670035 48673430 - TEC TEC MGP_AJ_T0015043.1 MGP_AJ_G0013138.1 mouse_genomes_project 5 80299929 80300296 - processed_pseudogene processed_pseudogene MGP_AJ_T0008163.1 MGP_AJ_G0006651.1 mouse_genomes_project 5 61831396 61833357 - Gm42564 lincRNA lincRNA MGP_AJ_T0008183.1 MGP_AJ_G0006667.1 mouse_genomes_project 5 72984663 72993007 + Gm43101 lincRNA lincRNA MGP_AJ_T0008184.1 MGP_AJ_G0006667.1 mouse_genomes_project 5 72991870 72993008 + Gm43101 lincRNA lincRNA MGP_AJ_T0004858.1 MGP_AJ_G0004180.1 mouse_genomes_project 5 134668562 134670395 - Gm15701 antisense antisense MGP_AJ_T0014958.1 MGP_AJ_G0013053.1 mouse_genomes_project 5 39716608 39717042 - processed_pseudogene processed_pseudogene MGP_AJ_T0075977.1 MGP_AJ_G0030354.1 mouse_genomes_project 5 146111013 146117956 + MGP_AJ_P0075977 Gtf3a protein_coding protein_coding MGP_AJ_T0075978.1 MGP_AJ_G0030354.1 mouse_genomes_project 5 146111054 146117945 + Gtf3a protein_coding retained_intron MGP_AJ_T0075979.1 MGP_AJ_G0030354.1 mouse_genomes_project 5 146111061 146117948 + MGP_AJ_P0075979 Gtf3a protein_coding protein_coding MGP_AJ_T0075980.1 MGP_AJ_G0030354.1 mouse_genomes_project 5 146112348 146117945 + Gtf3a protein_coding retained_intron MGP_AJ_T0001622.1 MGP_AJ_G0001539.1 mouse_genomes_project 5 59777483 59778527 - TEC TEC MGP_AJ_T0004799.1 MGP_AJ_G0004139.1 mouse_genomes_project 5 116258286 116262640 + Gm9754 antisense antisense MGP_AJ_T0001549.1 MGP_AJ_G0001467.1 mouse_genomes_project 5 42964899 42968318 - TEC TEC MGP_AJ_T0014865.1 MGP_AJ_G0012960.1 mouse_genomes_project 5 10700184 10701711 - processed_pseudogene processed_pseudogene MGP_AJ_T0014884.1 MGP_AJ_G0012979.1 mouse_genomes_project 5 18537780 18538579 + processed_pseudogene processed_pseudogene MGP_AJ_T0001482.1 MGP_AJ_G0001402.1 mouse_genomes_project 5 24229203 24231799 + TEC TEC MGP_AJ_T0070086.1 MGP_AJ_G0029229.1 mouse_genomes_project 5 536511 569399 + MGP_AJ_P0070086 Lrrd1 protein_coding protein_coding MGP_AJ_T0070087.1 MGP_AJ_G0029229.1 mouse_genomes_project 5 536525 541566 + MGP_AJ_P0070087 Lrrd1 protein_coding protein_coding MGP_AJ_T0074796.1 MGP_AJ_G0030116.1 mouse_genomes_project 5 129314766 129326008 - MGP_AJ_P0074796 unknown_likely_coding unknown_likely_coding MGP_AJ_T0075311.1 MGP_AJ_G0030203.1 mouse_genomes_project 5 136177433 136194197 - MGP_AJ_P0075311 Fbxo24 protein_coding protein_coding MGP_AJ_T0075312.1 MGP_AJ_G0030203.1 mouse_genomes_project 5 136177433 136190272 - MGP_AJ_P0075312 Fbxo24 protein_coding protein_coding MGP_AJ_T0075313.1 MGP_AJ_G0030203.1 mouse_genomes_project 5 136177436 136194151 - MGP_AJ_P0075313 Fbxo24 protein_coding nonsense_mediated_decay MGP_AJ_T0008356.1 MGP_AJ_G0006789.1 mouse_genomes_project 5 118181627 118185776 + Gm43277 lincRNA lincRNA MGP_AJ_T0071731.1 MGP_AJ_G0029511.1 mouse_genomes_project 5 49322779 49363088 - MGP_AJ_P0071731 Dhx15 protein_coding protein_coding MGP_AJ_T0071732.1 MGP_AJ_G0029511.1 mouse_genomes_project 5 49323269 49362951 - MGP_AJ_P0071732 Dhx15 protein_coding nonsense_mediated_decay MGP_AJ_T0071733.1 MGP_AJ_G0029511.1 mouse_genomes_project 5 49325900 49330376 - Dhx15 protein_coding retained_intron MGP_AJ_T0071734.1 MGP_AJ_G0029511.1 mouse_genomes_project 5 49326302 49363063 - MGP_AJ_P0071734 Dhx15 protein_coding protein_coding MGP_AJ_T0071735.1 MGP_AJ_G0029511.1 mouse_genomes_project 5 49331237 49334207 - Dhx15 protein_coding retained_intron MGP_AJ_T0071736.1 MGP_AJ_G0029511.1 mouse_genomes_project 5 49339334 49363068 - MGP_AJ_P0071736 Dhx15 protein_coding protein_coding MGP_AJ_T0071737.1 MGP_AJ_G0029511.1 mouse_genomes_project 5 49357388 49359988 - Dhx15 protein_coding retained_intron MGP_AJ_T0100024.1 MGP_AJ_G0037990.1 mouse_genomes_project 5 78170904 78171007 + Gm22974 snRNA snRNA MGP_AJ_T0015030.1 MGP_AJ_G0013125.1 mouse_genomes_project 5 73327032 73327384 - processed_pseudogene processed_pseudogene MGP_AJ_T0015168.1 MGP_AJ_G0013263.1 mouse_genomes_project 5 136180559 136180830 + processed_pseudogene processed_pseudogene MGP_AJ_T0075537.1 MGP_AJ_G0030250.1 mouse_genomes_project 5 138207294 138209300 + Cyp2w1 protein_coding retained_intron MGP_AJ_T0075538.1 MGP_AJ_G0030250.1 mouse_genomes_project 5 138207294 138211711 + MGP_AJ_P0075538 Cyp2w1 protein_coding protein_coding MGP_AJ_T0075539.1 MGP_AJ_G0030250.1 mouse_genomes_project 5 138209253 138211345 + MGP_AJ_P0075539 Cyp2w1 protein_coding protein_coding MGP_AJ_T0075690.1 MGP_AJ_G0030287.1 mouse_genomes_project 5 141799399 141828669 - MGP_AJ_P0075690 Fbxl18 protein_coding protein_coding MGP_AJ_T0075691.1 MGP_AJ_G0030287.1 mouse_genomes_project 5 141804220 141805329 - Fbxl18 protein_coding retained_intron MGP_AJ_T0075692.1 MGP_AJ_G0030287.1 mouse_genomes_project 5 141804233 141828486 - MGP_AJ_P0075692 Fbxl18 protein_coding protein_coding MGP_AJ_T0075693.1 MGP_AJ_G0030287.1 mouse_genomes_project 5 141804496 141804938 - Fbxl18 protein_coding processed_transcript MGP_AJ_T0075694.1 MGP_AJ_G0030287.1 mouse_genomes_project 5 141814935 141828669 - Fbxl18 protein_coding retained_intron MGP_AJ_T0072171.1 MGP_AJ_G0029589.1 mouse_genomes_project 5 70247846 70264205 + MGP_AJ_P0072171 Gm5868 protein_coding protein_coding MGP_AJ_T0070304.1 MGP_AJ_G0029263.1 mouse_genomes_project 5 13484886 13504817 + Hgf protein_coding retained_intron MGP_AJ_T0070305.1 MGP_AJ_G0029263.1 mouse_genomes_project 5 13484941 13551374 + MGP_AJ_P0070305 Hgf protein_coding protein_coding MGP_AJ_T0070306.1 MGP_AJ_G0029263.1 mouse_genomes_project 5 13484970 13500390 + Hgf protein_coding retained_intron MGP_AJ_T0070307.1 MGP_AJ_G0029263.1 mouse_genomes_project 5 13485139 13500963 + Hgf protein_coding retained_intron MGP_AJ_T0070308.1 MGP_AJ_G0029263.1 mouse_genomes_project 5 13485174 13550528 + MGP_AJ_P0070308 Hgf protein_coding protein_coding MGP_AJ_T0070309.1 MGP_AJ_G0029263.1 mouse_genomes_project 5 13485316 13550232 + MGP_AJ_P0070309 Hgf protein_coding protein_coding MGP_AJ_T0001833.1 MGP_AJ_G0001747.1 mouse_genomes_project 5 126743707 126746951 - TEC TEC MGP_AJ_T0015039.1 MGP_AJ_G0013134.1 mouse_genomes_project 5 75804200 75804564 + processed_pseudogene processed_pseudogene MGP_AJ_T0008078.1 MGP_AJ_G0006591.1 mouse_genomes_project 5 23459847 23493275 - 4930584F24Rik lincRNA lincRNA MGP_AJ_T0008079.1 MGP_AJ_G0006591.1 mouse_genomes_project 5 23459849 23493300 - 4930584F24Rik lincRNA lincRNA MGP_AJ_T0008080.1 MGP_AJ_G0006591.1 mouse_genomes_project 5 23459851 23493264 - 4930584F24Rik lincRNA lincRNA MGP_AJ_T0008081.1 MGP_AJ_G0006591.1 mouse_genomes_project 5 23474910 23493275 - 4930584F24Rik lincRNA lincRNA MGP_AJ_T0071005.1 MGP_AJ_G0029395.1 mouse_genomes_project 5 28600309 28602720 + Slc4a1ap protein_coding retained_intron MGP_AJ_T0071006.1 MGP_AJ_G0029395.1 mouse_genomes_project 5 28600309 28627729 + MGP_AJ_P0071006 Slc4a1ap protein_coding protein_coding MGP_AJ_T0071007.1 MGP_AJ_G0029395.1 mouse_genomes_project 5 28600311 28607764 + Slc4a1ap protein_coding retained_intron MGP_AJ_T0071008.1 MGP_AJ_G0029395.1 mouse_genomes_project 5 28600311 28628035 + MGP_AJ_P0071008 Slc4a1ap protein_coding protein_coding MGP_AJ_T0071009.1 MGP_AJ_G0029395.1 mouse_genomes_project 5 28600326 28610159 + MGP_AJ_P0071009 Slc4a1ap protein_coding protein_coding MGP_AJ_T0071010.1 MGP_AJ_G0029395.1 mouse_genomes_project 5 28600326 28627734 + MGP_AJ_P0071010 Slc4a1ap protein_coding protein_coding MGP_AJ_T0071011.1 MGP_AJ_G0029395.1 mouse_genomes_project 5 28600915 28605543 + Slc4a1ap protein_coding retained_intron MGP_AJ_T0071012.1 MGP_AJ_G0029395.1 mouse_genomes_project 5 28605287 28608305 + Slc4a1ap protein_coding retained_intron MGP_AJ_T0071013.1 MGP_AJ_G0029395.1 mouse_genomes_project 5 28609472 28627700 + MGP_AJ_P0071013 Slc4a1ap protein_coding protein_coding MGP_AJ_T0071014.1 MGP_AJ_G0029395.1 mouse_genomes_project 5 28616930 28627730 + Slc4a1ap protein_coding retained_intron MGP_AJ_T0071015.1 MGP_AJ_G0029395.1 mouse_genomes_project 5 28617119 28627734 + MGP_AJ_P0071015 Slc4a1ap protein_coding protein_coding MGP_AJ_T0071016.1 MGP_AJ_G0029395.1 mouse_genomes_project 5 28617197 28627659 + MGP_AJ_P0071016 Slc4a1ap protein_coding protein_coding MGP_AJ_T0071017.1 MGP_AJ_G0029395.1 mouse_genomes_project 5 28623879 28630507 + Slc4a1ap protein_coding processed_transcript MGP_AJ_T0071197.1 MGP_AJ_G0029424.1 mouse_genomes_project 5 31147486 31157421 + MGP_AJ_P0071197 Nat8l protein_coding protein_coding MGP_AJ_T0071198.1 MGP_AJ_G0029424.1 mouse_genomes_project 5 31151265 31152346 + Nat8l protein_coding processed_transcript MGP_AJ_T0004716.1 MGP_AJ_G0004078.1 mouse_genomes_project 5 68886992 68907095 - Gm43477 antisense antisense MGP_AJ_T0004806.1 MGP_AJ_G0004141.1 mouse_genomes_project 5 118343135 118361307 - Gm10390 antisense antisense MGP_AJ_T0004807.1 MGP_AJ_G0004141.1 mouse_genomes_project 5 118353530 118361309 - Gm10390 antisense antisense MGP_AJ_T0074247.1 MGP_AJ_G0030022.1 mouse_genomes_project 5 121143592 121167776 - MGP_AJ_P0074247 Camkk2 protein_coding protein_coding MGP_AJ_T0074248.1 MGP_AJ_G0030022.1 mouse_genomes_project 5 121144215 121154482 - MGP_AJ_P0074248 Camkk2 protein_coding protein_coding MGP_AJ_T0074249.1 MGP_AJ_G0030022.1 mouse_genomes_project 5 121144462 121195522 - MGP_AJ_P0074249 Camkk2 protein_coding protein_coding MGP_AJ_T0074250.1 MGP_AJ_G0030022.1 mouse_genomes_project 5 121151008 121195590 - Camkk2 protein_coding retained_intron MGP_AJ_T0074251.1 MGP_AJ_G0030022.1 mouse_genomes_project 5 121156832 121178882 - MGP_AJ_P0074251 Camkk2 protein_coding nonsense_mediated_decay MGP_AJ_T0074252.1 MGP_AJ_G0030022.1 mouse_genomes_project 5 121161964 121195526 - Camkk2 protein_coding processed_transcript MGP_AJ_T0074253.1 MGP_AJ_G0030022.1 mouse_genomes_project 5 121167741 121195472 - MGP_AJ_P0074253 Camkk2 protein_coding protein_coding MGP_AJ_T0074254.1 MGP_AJ_G0030022.1 mouse_genomes_project 5 121171306 121195516 - MGP_AJ_P0074254 Camkk2 protein_coding protein_coding MGP_AJ_T0074255.1 MGP_AJ_G0030022.1 mouse_genomes_project 5 121172573 121195600 - Camkk2 protein_coding retained_intron MGP_AJ_T0074256.1 MGP_AJ_G0030022.1 mouse_genomes_project 5 121179022 121195506 - MGP_AJ_P0074256 Camkk2 protein_coding protein_coding MGP_AJ_T0098701.1 MGP_AJ_G0036685.1 mouse_genomes_project 5 132928487 132928601 + n-R5s178 rRNA rRNA MGP_AJ_T0071947.1 MGP_AJ_G0029551.1 mouse_genomes_project 5 62994663 63063114 + MGP_AJ_P0071947 N4bp2 protein_coding protein_coding MGP_AJ_T0071948.1 MGP_AJ_G0029551.1 mouse_genomes_project 5 62995134 63017553 + N4bp2 protein_coding processed_transcript MGP_AJ_T0071949.1 MGP_AJ_G0029551.1 mouse_genomes_project 5 62995134 63007125 + N4bp2 protein_coding retained_intron MGP_AJ_T0071950.1 MGP_AJ_G0029551.1 mouse_genomes_project 5 62995275 63050012 + MGP_AJ_P0071950 N4bp2 protein_coding protein_coding MGP_AJ_T0071951.1 MGP_AJ_G0029551.1 mouse_genomes_project 5 62995376 63063121 + MGP_AJ_P0071951 N4bp2 protein_coding protein_coding MGP_AJ_T0071952.1 MGP_AJ_G0029551.1 mouse_genomes_project 5 63014241 63016395 + N4bp2 protein_coding retained_intron MGP_AJ_T0071953.1 MGP_AJ_G0029551.1 mouse_genomes_project 5 63033522 63036731 + N4bp2 protein_coding retained_intron MGP_AJ_T0071954.1 MGP_AJ_G0029551.1 mouse_genomes_project 5 63042370 63047762 + N4bp2 protein_coding retained_intron MGP_AJ_T0071955.1 MGP_AJ_G0029551.1 mouse_genomes_project 5 63058058 63059770 + N4bp2 protein_coding retained_intron MGP_AJ_T0008426.1 MGP_AJ_G0006830.1 mouse_genomes_project 5 135822551 135840529 - Gm42456 lincRNA lincRNA MGP_AJ_T0008185.1 MGP_AJ_G0006668.1 mouse_genomes_project 5 73011868 73017198 - Gm43100 lincRNA lincRNA MGP_AJ_T0010704.1 MGP_AJ_G0008826.1 mouse_genomes_project 5 112862324 112862388 + Mir7028 miRNA miRNA MGP_AJ_T0015186.1 MGP_AJ_G0013281.1 mouse_genomes_project 5 142003266 142003486 + processed_pseudogene processed_pseudogene MGP_AJ_T0010667.1 MGP_AJ_G0008789.1 mouse_genomes_project 5 27664827 27664907 + Mir5625 miRNA miRNA MGP_AJ_T0001564.1 MGP_AJ_G0001482.1 mouse_genomes_project 5 46006874 46009771 - TEC TEC MGP_AJ_T0015127.1 MGP_AJ_G0013222.1 mouse_genomes_project 5 111938002 111938370 + processed_pseudogene processed_pseudogene MGP_AJ_T0004831.1 MGP_AJ_G0004159.1 mouse_genomes_project 5 122700238 122707654 + Pitpnm2os1 antisense antisense MGP_AJ_T0070058.1 MGP_AJ_G0029225.1 mouse_genomes_project 5 327982 337629 - MGP_AJ_P0070058 Gatad1 protein_coding protein_coding MGP_AJ_T0070062.1 MGP_AJ_G0029225.1 mouse_genomes_project 5 337479 343709 - MGP_AJ_P0070062 Gatad1 protein_coding protein_coding MGP_AJ_T0070063.1 MGP_AJ_G0029225.1 mouse_genomes_project 5 339166 343896 - MGP_AJ_P0070063 Gatad1 protein_coding protein_coding MGP_AJ_T0001885.1 MGP_AJ_G0001798.1 mouse_genomes_project 5 135892800 135893757 + TEC TEC MGP_AJ_T0072964.1 MGP_AJ_G0029763.1 mouse_genomes_project 5 100600800 100899035 - MGP_AJ_P0072964 Mapk10 protein_coding protein_coding MGP_AJ_T0072965.1 MGP_AJ_G0029763.1 mouse_genomes_project 5 100600802 100750436 - MGP_AJ_P0072965 Mapk10 protein_coding protein_coding MGP_AJ_T0072966.1 MGP_AJ_G0029763.1 mouse_genomes_project 5 100600802 100899035 - MGP_AJ_P0072966 Mapk10 protein_coding protein_coding MGP_AJ_T0072967.1 MGP_AJ_G0029763.1 mouse_genomes_project 5 100600802 100792063 - MGP_AJ_P0072967 Mapk10 protein_coding protein_coding MGP_AJ_T0072968.1 MGP_AJ_G0029763.1 mouse_genomes_project 5 100605981 100893630 - MGP_AJ_P0072968 Mapk10 protein_coding nonsense_mediated_decay MGP_AJ_T0072969.1 MGP_AJ_G0029763.1 mouse_genomes_project 5 100613130 100898974 - MGP_AJ_P0072969 Mapk10 protein_coding protein_coding MGP_AJ_T0072970.1 MGP_AJ_G0029763.1 mouse_genomes_project 5 100679476 100719107 - MGP_AJ_P0072970 Mapk10 protein_coding protein_coding MGP_AJ_T0072971.1 MGP_AJ_G0029763.1 mouse_genomes_project 5 100679786 100899035 - MGP_AJ_P0072971 Mapk10 protein_coding protein_coding MGP_AJ_T0072972.1 MGP_AJ_G0029763.1 mouse_genomes_project 5 100847980 100898985 - Mapk10 protein_coding processed_transcript MGP_AJ_T0072973.1 MGP_AJ_G0029763.1 mouse_genomes_project 5 100893523 100896713 - Mapk10 protein_coding processed_transcript MGP_AJ_T0072974.1 MGP_AJ_G0029763.1 mouse_genomes_project 5 100893527 100899035 - Mapk10 protein_coding processed_transcript MGP_AJ_T0072975.1 MGP_AJ_G0029763.1 mouse_genomes_project 5 100896651 100898572 - Mapk10 protein_coding processed_transcript MGP_AJ_T0008145.1 MGP_AJ_G0006637.1 mouse_genomes_project 5 50475287 50476986 + lincRNA lincRNA MGP_AJ_T0001862.1 MGP_AJ_G0001776.1 mouse_genomes_project 5 130672635 130673965 - TEC TEC MGP_AJ_T0015104.1 MGP_AJ_G0013199.1 mouse_genomes_project 5 105683779 105684065 + processed_pseudogene processed_pseudogene MGP_AJ_T0015102.1 MGP_AJ_G0013197.1 mouse_genomes_project 5 105073062 105073807 + processed_pseudogene processed_pseudogene MGP_AJ_T0001737.1 MGP_AJ_G0001652.1 mouse_genomes_project 5 101568556 101568876 - TEC TEC MGP_AJ_T0071482.1 MGP_AJ_G0029471.1 mouse_genomes_project 5 35220252 35315878 + MGP_AJ_P0071482 Stx18 protein_coding protein_coding MGP_AJ_T0071483.1 MGP_AJ_G0029471.1 mouse_genomes_project 5 35220270 35315884 + MGP_AJ_P0071483 Stx18 protein_coding protein_coding MGP_AJ_T0071484.1 MGP_AJ_G0029471.1 mouse_genomes_project 5 35220301 35299695 + MGP_AJ_P0071484 Stx18 protein_coding protein_coding MGP_AJ_T0071485.1 MGP_AJ_G0029471.1 mouse_genomes_project 5 35220351 35315888 + MGP_AJ_P0071485 Stx18 protein_coding protein_coding MGP_AJ_T0071486.1 MGP_AJ_G0029471.1 mouse_genomes_project 5 35257643 35311487 + MGP_AJ_P0071486 Stx18 protein_coding protein_coding MGP_AJ_T0071487.1 MGP_AJ_G0029471.1 mouse_genomes_project 5 35294561 35304699 + Stx18 protein_coding processed_transcript MGP_AJ_T0071488.1 MGP_AJ_G0029471.1 mouse_genomes_project 5 35304308 35311513 + Stx18 protein_coding retained_intron MGP_AJ_T0014963.1 MGP_AJ_G0013058.1 mouse_genomes_project 5 42828442 42829067 - processed_pseudogene processed_pseudogene MGP_AJ_T0075961.1 MGP_AJ_G0030350.1 mouse_genomes_project 5 145739775 145741782 - Gpr12 protein_coding retained_intron MGP_AJ_T0075962.1 MGP_AJ_G0030350.1 mouse_genomes_project 5 145739777 145742618 - MGP_AJ_P0075962 Gpr12 protein_coding protein_coding MGP_AJ_T0075963.1 MGP_AJ_G0030350.1 mouse_genomes_project 5 145740129 145742210 - MGP_AJ_P0075963 Gpr12 protein_coding protein_coding MGP_AJ_T0075964.1 MGP_AJ_G0030350.1 mouse_genomes_project 5 145740848 145742197 - MGP_AJ_P0075964 Gpr12 protein_coding protein_coding MGP_AJ_T0075965.1 MGP_AJ_G0030350.1 mouse_genomes_project 5 145741032 145742221 - MGP_AJ_P0075965 Gpr12 protein_coding protein_coding MGP_AJ_T0072839.1 MGP_AJ_G0029740.1 mouse_genomes_project 5 95994353 96475528 + MGP_AJ_P0072839 1700007G11Rik protein_coding protein_coding MGP_AJ_T0072840.1 MGP_AJ_G0029740.1 mouse_genomes_project 5 95994400 96011545 + 1700007G11Rik protein_coding processed_transcript MGP_AJ_T0072841.1 MGP_AJ_G0029740.1 mouse_genomes_project 5 95994405 96011940 + 1700007G11Rik protein_coding processed_transcript MGP_AJ_T0072842.1 MGP_AJ_G0029740.1 mouse_genomes_project 5 95994419 96475556 + MGP_AJ_P0072842 1700007G11Rik protein_coding nonsense_mediated_decay MGP_AJ_T0075412.1 MGP_AJ_G0030227.1 mouse_genomes_project 5 136792994 136801589 - MGP_AJ_P0075412 Taf6 protein_coding protein_coding MGP_AJ_T0075413.1 MGP_AJ_G0030227.1 mouse_genomes_project 5 136792994 136801814 - MGP_AJ_P0075413 Taf6 protein_coding protein_coding MGP_AJ_T0075414.1 MGP_AJ_G0030227.1 mouse_genomes_project 5 136792997 136801568 - MGP_AJ_P0075414 Taf6 protein_coding protein_coding MGP_AJ_T0075415.1 MGP_AJ_G0030227.1 mouse_genomes_project 5 136793005 136801584 - MGP_AJ_P0075415 Taf6 protein_coding nonsense_mediated_decay MGP_AJ_T0075416.1 MGP_AJ_G0030227.1 mouse_genomes_project 5 136794518 136795839 - Taf6 protein_coding retained_intron MGP_AJ_T0075417.1 MGP_AJ_G0030227.1 mouse_genomes_project 5 136797045 136801589 - MGP_AJ_P0075417 Taf6 protein_coding protein_coding MGP_AJ_T0075418.1 MGP_AJ_G0030227.1 mouse_genomes_project 5 136798285 136801578 - MGP_AJ_P0075418 Taf6 protein_coding protein_coding MGP_AJ_T0075419.1 MGP_AJ_G0030227.1 mouse_genomes_project 5 136800440 136801579 - Taf6 protein_coding processed_transcript MGP_AJ_T0001644.1 MGP_AJ_G0001560.1 mouse_genomes_project 5 63093144 63094058 + TEC TEC MGP_AJ_T0072056.1 MGP_AJ_G0029565.1 mouse_genomes_project 5 64879914 65110742 - MGP_AJ_P0072056 Atp8a1 protein_coding protein_coding MGP_AJ_T0072057.1 MGP_AJ_G0029565.1 mouse_genomes_project 5 64879914 65110678 - MGP_AJ_P0072057 Atp8a1 protein_coding protein_coding MGP_AJ_T0072058.1 MGP_AJ_G0029565.1 mouse_genomes_project 5 64880937 65110739 - MGP_AJ_P0072058 Atp8a1 protein_coding protein_coding MGP_AJ_T0072059.1 MGP_AJ_G0029565.1 mouse_genomes_project 5 64882407 65110603 - MGP_AJ_P0072059 Atp8a1 protein_coding nonsense_mediated_decay MGP_AJ_T0072060.1 MGP_AJ_G0029565.1 mouse_genomes_project 5 64884508 64922605 - Atp8a1 protein_coding processed_transcript MGP_AJ_T0072061.1 MGP_AJ_G0029565.1 mouse_genomes_project 5 64945319 65040212 - Atp8a1 protein_coding retained_intron MGP_AJ_T0072062.1 MGP_AJ_G0029565.1 mouse_genomes_project 5 65029965 65032570 - Atp8a1 protein_coding retained_intron MGP_AJ_T0072063.1 MGP_AJ_G0029565.1 mouse_genomes_project 5 65039620 65078428 - Atp8a1 protein_coding processed_transcript MGP_AJ_T0072064.1 MGP_AJ_G0029565.1 mouse_genomes_project 5 65044363 65110739 - MGP_AJ_P0072064 Atp8a1 protein_coding protein_coding MGP_AJ_T0072065.1 MGP_AJ_G0029565.1 mouse_genomes_project 5 65044363 65110739 - MGP_AJ_P0072065 Atp8a1 protein_coding protein_coding MGP_AJ_T0072066.1 MGP_AJ_G0029565.1 mouse_genomes_project 5 65049753 65110737 - Atp8a1 protein_coding retained_intron MGP_AJ_T0072067.1 MGP_AJ_G0029565.1 mouse_genomes_project 5 65068570 65071930 - Atp8a1 protein_coding retained_intron MGP_AJ_T0072068.1 MGP_AJ_G0029565.1 mouse_genomes_project 5 65075365 65078437 - Atp8a1 protein_coding retained_intron MGP_AJ_T0072069.1 MGP_AJ_G0029565.1 mouse_genomes_project 5 65075369 65079051 - MGP_AJ_P0072069 Atp8a1 protein_coding protein_coding MGP_AJ_T0008109.1 MGP_AJ_G0006609.1 mouse_genomes_project 5 34991475 34992248 + Gm43763 lincRNA lincRNA MGP_AJ_T0071559.1 MGP_AJ_G0029483.1 mouse_genomes_project 5 38843954 38941695 - MGP_AJ_P0071559 Rab28 protein_coding protein_coding MGP_AJ_T0071560.1 MGP_AJ_G0029483.1 mouse_genomes_project 5 38843954 38941728 - MGP_AJ_P0071560 Rab28 protein_coding protein_coding MGP_AJ_T0071561.1 MGP_AJ_G0029483.1 mouse_genomes_project 5 38843955 38941731 - MGP_AJ_P0071561 Rab28 protein_coding protein_coding MGP_AJ_T0071562.1 MGP_AJ_G0029483.1 mouse_genomes_project 5 38844711 38846481 - Rab28 protein_coding retained_intron MGP_AJ_T0071563.1 MGP_AJ_G0029483.1 mouse_genomes_project 5 38845205 38848096 - Rab28 protein_coding retained_intron MGP_AJ_T0071489.1 MGP_AJ_G0029472.1 mouse_genomes_project 5 35316280 35338985 - MGP_AJ_P0071489 Nsg1 protein_coding protein_coding MGP_AJ_T0071490.1 MGP_AJ_G0029472.1 mouse_genomes_project 5 35317223 35317918 - MGP_AJ_P0071490 Nsg1 protein_coding protein_coding MGP_AJ_T0071491.1 MGP_AJ_G0029472.1 mouse_genomes_project 5 35317344 35338109 - MGP_AJ_P0071491 Nsg1 protein_coding protein_coding MGP_AJ_T0071492.1 MGP_AJ_G0029472.1 mouse_genomes_project 5 35317631 35338483 - MGP_AJ_P0071492 Nsg1 protein_coding protein_coding MGP_AJ_T0071493.1 MGP_AJ_G0029472.1 mouse_genomes_project 5 35323802 35338440 - MGP_AJ_P0071493 Nsg1 protein_coding protein_coding MGP_AJ_T0071494.1 MGP_AJ_G0029472.1 mouse_genomes_project 5 35334411 35338551 - Nsg1 protein_coding retained_intron MGP_AJ_T0071495.1 MGP_AJ_G0029472.1 mouse_genomes_project 5 35337983 35338483 - MGP_AJ_P0071495 Nsg1 protein_coding protein_coding MGP_AJ_T0015040.1 MGP_AJ_G0013135.1 mouse_genomes_project 5 76758193 76758211 + processed_pseudogene processed_pseudogene MGP_AJ_T0014891.1 MGP_AJ_G0012986.1 mouse_genomes_project 5 19233985 19234355 + processed_pseudogene processed_pseudogene MGP_AJ_T0101810.1 MGP_AJ_G0039717.1 mouse_genomes_project 5 20795521 20796065 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0072319.1 MGP_AJ_G0029614.1 mouse_genomes_project 5 73857045 73913617 + Cep135 protein_coding retained_intron MGP_AJ_T0072320.1 MGP_AJ_G0029614.1 mouse_genomes_project 5 73857048 73915175 + MGP_AJ_P0072320 Cep135 protein_coding protein_coding MGP_AJ_T0072321.1 MGP_AJ_G0029614.1 mouse_genomes_project 5 73860064 73915174 + MGP_AJ_P0072321 Cep135 protein_coding protein_coding MGP_AJ_T0071821.1 MGP_AJ_G0029528.1 mouse_genomes_project 5 59767512 59777442 - Arap2 protein_coding retained_intron MGP_AJ_T0071822.1 MGP_AJ_G0029528.1 mouse_genomes_project 5 59767513 59920534 - MGP_AJ_P0071822 Arap2 protein_coding unknown_likely_coding MGP_AJ_T0071823.1 MGP_AJ_G0029528.1 mouse_genomes_project 5 59767513 59941237 - MGP_AJ_P0071823 Arap2 protein_coding protein_coding MGP_AJ_T0071824.1 MGP_AJ_G0029528.1 mouse_genomes_project 5 59800264 59803936 - Arap2 protein_coding retained_intron MGP_AJ_T0071825.1 MGP_AJ_G0029528.1 mouse_genomes_project 5 59807232 59811270 - Arap2 protein_coding retained_intron MGP_AJ_T0071826.1 MGP_AJ_G0029528.1 mouse_genomes_project 5 59842436 59848739 - Arap2 protein_coding retained_intron MGP_AJ_T0071827.1 MGP_AJ_G0029528.1 mouse_genomes_project 5 59871365 59897740 - Arap2 protein_coding processed_transcript MGP_AJ_T0071828.1 MGP_AJ_G0029528.1 mouse_genomes_project 5 59922707 59941276 - MGP_AJ_P0071828 Arap2 protein_coding protein_coding MGP_AJ_T0014924.1 MGP_AJ_G0013019.1 mouse_genomes_project 5 26740234 26740613 - processed_pseudogene processed_pseudogene MGP_AJ_T0001586.1 MGP_AJ_G0001503.1 mouse_genomes_project 5 48641270 48642829 - TEC TEC MGP_AJ_T0015130.1 MGP_AJ_G0013225.1 mouse_genomes_project 5 112973758 112974378 - processed_pseudogene processed_pseudogene MGP_AJ_T0000287.1 MGP_AJ_G0000231.1 mouse_genomes_project 6 65777529 65777787 + IG_V_pseudogene IG_V_pseudogene MGP_AJ_T0005110.1 MGP_AJ_G0004359.1 mouse_genomes_project 6 137535332 137554531 + B230110G15Rik antisense antisense MGP_AJ_T0015385.1 MGP_AJ_G0013480.1 mouse_genomes_project 6 62251095 62251889 + processed_pseudogene processed_pseudogene MGP_AJ_T0080605.1 MGP_AJ_G0031353.1 mouse_genomes_project 6 130968411 130971403 - MGP_AJ_P0080605 protein_coding protein_coding MGP_AJ_T0011647.1 MGP_AJ_G0009769.1 mouse_genomes_project 6 49083239 49083472 + Gm27817 misc_RNA misc_RNA MGP_AJ_T0077329.1 MGP_AJ_G0030636.1 mouse_genomes_project 6 39545080 39546013 + MGP_AJ_P0077329 Olfr450 protein_coding protein_coding MGP_AJ_T0079139.1 MGP_AJ_G0031047.1 mouse_genomes_project 6 95891479 96116065 + MGP_AJ_P0079139 Mitf protein_coding protein_coding MGP_AJ_T0079140.1 MGP_AJ_G0031047.1 mouse_genomes_project 6 95891485 96035885 + Mitf protein_coding retained_intron MGP_AJ_T0079141.1 MGP_AJ_G0031047.1 mouse_genomes_project 6 95891485 96118821 + MGP_AJ_P0079141 Mitf protein_coding protein_coding MGP_AJ_T0079142.1 MGP_AJ_G0031047.1 mouse_genomes_project 6 96021262 96116179 + MGP_AJ_P0079142 Mitf protein_coding protein_coding MGP_AJ_T0079143.1 MGP_AJ_G0031047.1 mouse_genomes_project 6 96034623 96116179 + MGP_AJ_P0079143 Mitf protein_coding protein_coding MGP_AJ_T0079144.1 MGP_AJ_G0031047.1 mouse_genomes_project 6 96088051 96116179 + MGP_AJ_P0079144 Mitf protein_coding protein_coding MGP_AJ_T0079145.1 MGP_AJ_G0031047.1 mouse_genomes_project 6 96088078 96115969 + MGP_AJ_P0079145 Mitf protein_coding nonsense_mediated_decay MGP_AJ_T0079146.1 MGP_AJ_G0031047.1 mouse_genomes_project 6 96088180 96115647 + MGP_AJ_P0079146 Mitf protein_coding protein_coding MGP_AJ_T0005005.1 MGP_AJ_G0004285.1 mouse_genomes_project 6 84373022 84383515 - A430078I02Rik antisense antisense MGP_AJ_T0005006.1 MGP_AJ_G0004285.1 mouse_genomes_project 6 84373555 84383575 - A430078I02Rik antisense antisense MGP_AJ_T0002102.1 MGP_AJ_G0002015.1 mouse_genomes_project 6 99246749 99249609 + TEC TEC MGP_AJ_T0080553.1 MGP_AJ_G0031328.1 mouse_genomes_project 6 128224347 128236399 - MGP_AJ_P0080553 Klrc1 protein_coding protein_coding MGP_AJ_T0080554.1 MGP_AJ_G0031328.1 mouse_genomes_project 6 128232250 128236354 - MGP_AJ_P0080554 Klrc1 protein_coding protein_coding MGP_AJ_T0080555.1 MGP_AJ_G0031328.1 mouse_genomes_project 6 128232251 128236399 - MGP_AJ_P0080555 Klrc1 protein_coding protein_coding MGP_AJ_T0080556.1 MGP_AJ_G0031328.1 mouse_genomes_project 6 128232275 128236336 - MGP_AJ_P0080556 Klrc1 protein_coding protein_coding MGP_AJ_T0015287.1 MGP_AJ_G0013382.1 mouse_genomes_project 6 26619739 26620892 + processed_pseudogene processed_pseudogene MGP_AJ_T0015431.1 MGP_AJ_G0013526.1 mouse_genomes_project 6 69060109 69060508 + processed_pseudogene processed_pseudogene MGP_AJ_T0002732.1 MGP_AJ_G0002604.1 mouse_genomes_project 6 37971899 37972366 + TR_V_pseudogene TR_V_pseudogene MGP_AJ_T0099081.1 MGP_AJ_G0037054.1 mouse_genomes_project 6 126891823 126893796 - Gm44190 sense_intronic sense_intronic MGP_AJ_T0001919.1 MGP_AJ_G0001832.1 mouse_genomes_project 6 4617297 4619169 + TEC TEC MGP_AJ_T0102721.1 MGP_AJ_G0040462.1 mouse_genomes_project 6 128997810 129007774 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0008524.1 MGP_AJ_G0006900.1 mouse_genomes_project 6 13428396 13439685 + Gm36669 lincRNA lincRNA MGP_AJ_T0077257.1 MGP_AJ_G0030611.1 mouse_genomes_project 6 38699083 38703552 + MGP_AJ_P0077257 Sval1 protein_coding protein_coding MGP_AJ_T0076451.1 MGP_AJ_G0030442.1 mouse_genomes_project 6 13956268 13991261 + MGP_AJ_P0076451 Cav1 protein_coding protein_coding MGP_AJ_T0076452.1 MGP_AJ_G0030442.1 mouse_genomes_project 6 13956278 13990366 + MGP_AJ_P0076452 Cav1 protein_coding protein_coding MGP_AJ_T0076453.1 MGP_AJ_G0030442.1 mouse_genomes_project 6 13956343 13989233 + MGP_AJ_P0076453 Cav1 protein_coding protein_coding MGP_AJ_T0076454.1 MGP_AJ_G0030442.1 mouse_genomes_project 6 13956344 13977033 + Cav1 protein_coding processed_transcript MGP_AJ_T0076455.1 MGP_AJ_G0030442.1 mouse_genomes_project 6 13956344 13989288 + MGP_AJ_P0076455 Cav1 protein_coding nonsense_mediated_decay MGP_AJ_T0076456.1 MGP_AJ_G0030442.1 mouse_genomes_project 6 13956356 13958133 + MGP_AJ_P0076456 Cav1 protein_coding protein_coding MGP_AJ_T0076457.1 MGP_AJ_G0030442.1 mouse_genomes_project 6 13956977 13989090 + MGP_AJ_P0076457 Cav1 protein_coding protein_coding MGP_AJ_T0076458.1 MGP_AJ_G0030442.1 mouse_genomes_project 6 13957207 13989456 + MGP_AJ_P0076458 Cav1 protein_coding protein_coding MGP_AJ_T0076459.1 MGP_AJ_G0030442.1 mouse_genomes_project 6 13957569 13991389 + MGP_AJ_P0076459 Cav1 protein_coding protein_coding MGP_AJ_T0076460.1 MGP_AJ_G0030442.1 mouse_genomes_project 6 13957652 13977024 + Cav1 protein_coding processed_transcript MGP_AJ_T0080785.1 MGP_AJ_G0031411.1 mouse_genomes_project 6 136424498 136507443 - MGP_AJ_P0080785 Eps8 protein_coding unknown_likely_coding MGP_AJ_T0080786.1 MGP_AJ_G0031411.1 mouse_genomes_project 6 136446872 136595185 - MGP_AJ_P0080786 Eps8 protein_coding protein_coding MGP_AJ_T0080787.1 MGP_AJ_G0031411.1 mouse_genomes_project 6 136461597 136467670 - Eps8 protein_coding processed_transcript MGP_AJ_T0080788.1 MGP_AJ_G0031411.1 mouse_genomes_project 6 136464350 136602469 - MGP_AJ_P0080788 Eps8 protein_coding protein_coding MGP_AJ_T0080789.1 MGP_AJ_G0031411.1 mouse_genomes_project 6 136464374 136467613 - Eps8 protein_coding retained_intron MGP_AJ_T0080790.1 MGP_AJ_G0031411.1 mouse_genomes_project 6 136470953 136537606 - MGP_AJ_P0080790 Eps8 protein_coding protein_coding MGP_AJ_T0080791.1 MGP_AJ_G0031411.1 mouse_genomes_project 6 136475889 136596114 - Eps8 protein_coding processed_transcript MGP_AJ_T0080792.1 MGP_AJ_G0031411.1 mouse_genomes_project 6 136483560 136486768 - Eps8 protein_coding retained_intron MGP_AJ_T0080793.1 MGP_AJ_G0031411.1 mouse_genomes_project 6 136486317 136595185 - MGP_AJ_P0080793 Eps8 protein_coding protein_coding MGP_AJ_T0080794.1 MGP_AJ_G0031411.1 mouse_genomes_project 6 136488015 136596127 - MGP_AJ_P0080794 Eps8 protein_coding protein_coding MGP_AJ_T0080795.1 MGP_AJ_G0031411.1 mouse_genomes_project 6 136515691 136519307 - Eps8 protein_coding retained_intron MGP_AJ_T0080762.1 MGP_AJ_G0031406.1 mouse_genomes_project 6 135801976 135817838 - MGP_AJ_P0080762 Erp27 protein_coding protein_coding MGP_AJ_T0080763.1 MGP_AJ_G0031406.1 mouse_genomes_project 6 135804424 135817838 - Erp27 protein_coding retained_intron MGP_AJ_T0080764.1 MGP_AJ_G0031406.1 mouse_genomes_project 6 135815324 135817798 - Erp27 protein_coding retained_intron MGP_AJ_T0010788.1 MGP_AJ_G0008910.1 mouse_genomes_project 6 97152387 97152534 - miRNA miRNA MGP_AJ_T0015473.1 MGP_AJ_G0013568.1 mouse_genomes_project 6 83810174 83811018 - processed_pseudogene processed_pseudogene MGP_AJ_T0078248.1 MGP_AJ_G0030868.1 mouse_genomes_project 6 77558927 77559376 + MGP_AJ_P0078248 Gm20594 protein_coding protein_coding MGP_AJ_T0076745.1 MGP_AJ_G0030502.1 mouse_genomes_project 6 26344103 26369534 + MGP_AJ_P0076745 Tspan33 protein_coding protein_coding MGP_AJ_T0076746.1 MGP_AJ_G0030502.1 mouse_genomes_project 6 26344115 26369532 + MGP_AJ_P0076746 Tspan33 protein_coding protein_coding MGP_AJ_T0076747.1 MGP_AJ_G0030502.1 mouse_genomes_project 6 26359058 26365865 + Tspan33 protein_coding retained_intron MGP_AJ_T0015681.1 MGP_AJ_G0013776.1 mouse_genomes_project 6 148424029 148424893 + processed_pseudogene processed_pseudogene MGP_AJ_T0002012.1 MGP_AJ_G0001925.1 mouse_genomes_project 6 70372184 70373416 - TEC TEC MGP_AJ_T0079290.1 MGP_AJ_G0031078.1 mouse_genomes_project 6 110682836 110757560 - MGP_AJ_P0079290 Rad18 protein_coding protein_coding MGP_AJ_T0079291.1 MGP_AJ_G0031078.1 mouse_genomes_project 6 110682931 110757478 - MGP_AJ_P0079291 Rad18 protein_coding protein_coding MGP_AJ_T0079292.1 MGP_AJ_G0031078.1 mouse_genomes_project 6 110682959 110757485 - MGP_AJ_P0079292 Rad18 protein_coding protein_coding MGP_AJ_T0079293.1 MGP_AJ_G0031078.1 mouse_genomes_project 6 110682961 110757544 - MGP_AJ_P0079293 Rad18 protein_coding protein_coding MGP_AJ_T0079294.1 MGP_AJ_G0031078.1 mouse_genomes_project 6 110683817 110737012 - MGP_AJ_P0079294 Rad18 protein_coding protein_coding MGP_AJ_T0079295.1 MGP_AJ_G0031078.1 mouse_genomes_project 6 110689390 110757522 - Rad18 protein_coding processed_transcript MGP_AJ_T0079296.1 MGP_AJ_G0031078.1 mouse_genomes_project 6 110709237 110757507 - MGP_AJ_P0079296 Rad18 protein_coding nonsense_mediated_decay MGP_AJ_T0079297.1 MGP_AJ_G0031078.1 mouse_genomes_project 6 110722979 110757518 - Rad18 protein_coding retained_intron MGP_AJ_T0080431.1 MGP_AJ_G0031294.1 mouse_genomes_project 6 126918578 126927491 + MGP_AJ_P0080431 4933413G19Rik protein_coding protein_coding MGP_AJ_T0080432.1 MGP_AJ_G0031294.1 mouse_genomes_project 6 126918578 126928154 + MGP_AJ_P0080432 4933413G19Rik protein_coding protein_coding MGP_AJ_T0076712.1 MGP_AJ_G0030496.1 mouse_genomes_project 6 26073959 26079742 + Flnc protein_coding retained_intron MGP_AJ_T0076713.1 MGP_AJ_G0030496.1 mouse_genomes_project 6 26073979 26102184 + MGP_AJ_P0076713 Flnc protein_coding protein_coding MGP_AJ_T0076714.1 MGP_AJ_G0030496.1 mouse_genomes_project 6 26073979 26102184 + MGP_AJ_P0076714 Flnc protein_coding protein_coding MGP_AJ_T0002147.1 MGP_AJ_G0002059.1 mouse_genomes_project 6 126902734 126903201 + TEC TEC MGP_AJ_T0078411.1 MGP_AJ_G0030900.1 mouse_genomes_project 6 81162794 81251464 - MGP_AJ_P0078411 Tet3 protein_coding protein_coding MGP_AJ_T0078412.1 MGP_AJ_G0030900.1 mouse_genomes_project 6 81193091 81236361 - Tet3 protein_coding processed_transcript MGP_AJ_T0078413.1 MGP_AJ_G0030900.1 mouse_genomes_project 6 81199149 81254184 - MGP_AJ_P0078413 Tet3 protein_coding protein_coding MGP_AJ_T0078414.1 MGP_AJ_G0030900.1 mouse_genomes_project 6 81231479 81236315 - Tet3 protein_coding retained_intron MGP_AJ_T0008794.1 MGP_AJ_G0007099.1 mouse_genomes_project 6 146720690 146723717 - lincRNA lincRNA MGP_AJ_T0080043.1 MGP_AJ_G0031223.1 mouse_genomes_project 6 122787760 122806008 - MGP_AJ_P0080043 Pex5 protein_coding protein_coding MGP_AJ_T0080044.1 MGP_AJ_G0031223.1 mouse_genomes_project 6 122787761 122805374 - MGP_AJ_P0080044 Pex5 protein_coding protein_coding MGP_AJ_T0080045.1 MGP_AJ_G0031223.1 mouse_genomes_project 6 122787761 122806008 - MGP_AJ_P0080045 Pex5 protein_coding protein_coding MGP_AJ_T0080046.1 MGP_AJ_G0031223.1 mouse_genomes_project 6 122787761 122805804 - MGP_AJ_P0080046 Pex5 protein_coding protein_coding MGP_AJ_T0080047.1 MGP_AJ_G0031223.1 mouse_genomes_project 6 122787776 122805978 - MGP_AJ_P0080047 Pex5 protein_coding protein_coding MGP_AJ_T0080048.1 MGP_AJ_G0031223.1 mouse_genomes_project 6 122788854 122790558 - Pex5 protein_coding retained_intron MGP_AJ_T0080049.1 MGP_AJ_G0031223.1 mouse_genomes_project 6 122794073 122804983 - Pex5 protein_coding processed_transcript MGP_AJ_T0080050.1 MGP_AJ_G0031223.1 mouse_genomes_project 6 122795256 122796311 - Pex5 protein_coding retained_intron MGP_AJ_T0015394.1 MGP_AJ_G0013489.1 mouse_genomes_project 6 62958445 62959010 + processed_pseudogene processed_pseudogene MGP_AJ_T0002061.1 MGP_AJ_G0001974.1 mouse_genomes_project 6 85756880 85759669 - TEC TEC MGP_AJ_T0011641.1 MGP_AJ_G0009763.1 mouse_genomes_project 6 48996548 48996762 + Gm27861 misc_RNA misc_RNA MGP_AJ_T0076718.1 MGP_AJ_G0030498.1 mouse_genomes_project 6 26111712 26113741 + MGP_AJ_P0076718 Gm9047 protein_coding protein_coding MGP_AJ_T0000051.1 MGP_AJ_G0000041.1 mouse_genomes_project 6 68428446 68428482 + Igkj3 IG_J_gene processed_transcript MGP_AJ_T0000052.1 MGP_AJ_G0000041.1 mouse_genomes_project 6 68428446 68428484 + MGP_AJ_P0000052 Igkj3 IG_J_gene IG_J_gene MGP_AJ_T0015649.1 MGP_AJ_G0013744.1 mouse_genomes_project 6 135217782 135218968 + processed_pseudogene processed_pseudogene MGP_AJ_T0015468.1 MGP_AJ_G0013563.1 mouse_genomes_project 6 82924630 82925386 + processed_pseudogene processed_pseudogene MGP_AJ_T0079430.1 MGP_AJ_G0031099.1 mouse_genomes_project 6 111608536 111675329 + MGP_AJ_P0079430 Fancd2 protein_coding protein_coding MGP_AJ_T0079431.1 MGP_AJ_G0031099.1 mouse_genomes_project 6 111608558 111614687 + Fancd2 protein_coding retained_intron MGP_AJ_T0079432.1 MGP_AJ_G0031099.1 mouse_genomes_project 6 111608558 111615570 + Fancd2 protein_coding retained_intron MGP_AJ_T0079433.1 MGP_AJ_G0031099.1 mouse_genomes_project 6 111608558 111674585 + MGP_AJ_P0079433 Fancd2 protein_coding protein_coding MGP_AJ_T0079434.1 MGP_AJ_G0031099.1 mouse_genomes_project 6 111628591 111630758 + Fancd2 protein_coding retained_intron MGP_AJ_T0079435.1 MGP_AJ_G0031099.1 mouse_genomes_project 6 111628595 111639210 + MGP_AJ_P0079435 Fancd2 protein_coding protein_coding MGP_AJ_T0079436.1 MGP_AJ_G0031099.1 mouse_genomes_project 6 111645431 111651342 + MGP_AJ_P0079436 Fancd2 protein_coding nonsense_mediated_decay MGP_AJ_T0079437.1 MGP_AJ_G0031099.1 mouse_genomes_project 6 111661409 111663998 + Fancd2 protein_coding retained_intron MGP_AJ_T0102726.1 MGP_AJ_G0040467.1 mouse_genomes_project 6 131118842 131122980 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0078488.1 MGP_AJ_G0030913.1 mouse_genomes_project 6 81817056 82026024 + MGP_AJ_P0078488 Dysf protein_coding protein_coding MGP_AJ_T0078489.1 MGP_AJ_G0030913.1 mouse_genomes_project 6 81817168 82025860 + MGP_AJ_P0078489 Dysf protein_coding protein_coding MGP_AJ_T0078490.1 MGP_AJ_G0030913.1 mouse_genomes_project 6 81817168 82025860 + MGP_AJ_P0078490 Dysf protein_coding protein_coding MGP_AJ_T0078491.1 MGP_AJ_G0030913.1 mouse_genomes_project 6 81817168 82025860 + MGP_AJ_P0078491 Dysf protein_coding protein_coding MGP_AJ_T0078492.1 MGP_AJ_G0030913.1 mouse_genomes_project 6 81817233 82025860 + MGP_AJ_P0078492 Dysf protein_coding protein_coding MGP_AJ_T0078493.1 MGP_AJ_G0030913.1 mouse_genomes_project 6 81817381 82026023 + MGP_AJ_P0078493 Dysf protein_coding protein_coding MGP_AJ_T0078494.1 MGP_AJ_G0030913.1 mouse_genomes_project 6 81827854 82025821 + MGP_AJ_P0078494 Dysf protein_coding protein_coding MGP_AJ_T0078495.1 MGP_AJ_G0030913.1 mouse_genomes_project 6 81827854 82025821 + MGP_AJ_P0078495 Dysf protein_coding protein_coding MGP_AJ_T0078496.1 MGP_AJ_G0030913.1 mouse_genomes_project 6 81827854 82026023 + MGP_AJ_P0078496 Dysf protein_coding protein_coding MGP_AJ_T0078497.1 MGP_AJ_G0030913.1 mouse_genomes_project 6 81827854 82025821 + MGP_AJ_P0078497 Dysf protein_coding protein_coding MGP_AJ_T0078498.1 MGP_AJ_G0030913.1 mouse_genomes_project 6 81827855 82026024 + MGP_AJ_P0078498 Dysf protein_coding protein_coding MGP_AJ_T0078499.1 MGP_AJ_G0030913.1 mouse_genomes_project 6 81827858 82026023 + MGP_AJ_P0078499 Dysf protein_coding protein_coding MGP_AJ_T0078500.1 MGP_AJ_G0030913.1 mouse_genomes_project 6 81918213 81926043 + Dysf protein_coding processed_transcript MGP_AJ_T0078501.1 MGP_AJ_G0030913.1 mouse_genomes_project 6 81919391 81930723 + Dysf protein_coding retained_intron MGP_AJ_T0078502.1 MGP_AJ_G0030913.1 mouse_genomes_project 6 81960486 81966154 + Dysf protein_coding processed_transcript MGP_AJ_T0078503.1 MGP_AJ_G0030913.1 mouse_genomes_project 6 82025447 82026005 + Dysf protein_coding processed_transcript MGP_AJ_T0002100.1 MGP_AJ_G0002013.1 mouse_genomes_project 6 98895288 98897366 + TEC TEC MGP_AJ_T0002123.1 MGP_AJ_G0002036.1 mouse_genomes_project 6 113697765 113698175 + TEC TEC MGP_AJ_T0076667.1 MGP_AJ_G0030488.1 mouse_genomes_project 6 25801648 25811117 - MGP_AJ_P0076667 Prrt4 protein_coding unknown_likely_coding MGP_AJ_T0080169.1 MGP_AJ_G0031245.1 mouse_genomes_project 6 123350830 123399534 - MGP_AJ_P0080169 Cd4 protein_coding unknown_likely_coding MGP_AJ_T0080170.1 MGP_AJ_G0031245.1 mouse_genomes_project 6 123350834 123374449 - MGP_AJ_P0080170 Cd4 protein_coding protein_coding MGP_AJ_T0080171.1 MGP_AJ_G0031245.1 mouse_genomes_project 6 123352776 123356521 - Cd4 protein_coding processed_transcript MGP_AJ_T0080172.1 MGP_AJ_G0031245.1 mouse_genomes_project 6 123352876 123356738 - Cd4 protein_coding processed_transcript MGP_AJ_T0080173.1 MGP_AJ_G0031245.1 mouse_genomes_project 6 123353481 123374427 - Cd4 protein_coding retained_intron MGP_AJ_T0080174.1 MGP_AJ_G0031245.1 mouse_genomes_project 6 123364964 123374428 - Cd4 protein_coding retained_intron MGP_AJ_T0079615.1 MGP_AJ_G0031133.1 mouse_genomes_project 6 114309602 114365153 + MGP_AJ_P0079615 Fam21 protein_coding protein_coding MGP_AJ_T0079616.1 MGP_AJ_G0031133.1 mouse_genomes_project 6 114309610 114357538 + MGP_AJ_P0079616 Fam21 protein_coding protein_coding MGP_AJ_T0079617.1 MGP_AJ_G0031133.1 mouse_genomes_project 6 114309620 114322114 + MGP_AJ_P0079617 Fam21 protein_coding nonsense_mediated_decay MGP_AJ_T0079618.1 MGP_AJ_G0031133.1 mouse_genomes_project 6 114309659 114310887 + Fam21 protein_coding retained_intron MGP_AJ_T0079619.1 MGP_AJ_G0031133.1 mouse_genomes_project 6 114309686 114315537 + MGP_AJ_P0079619 Fam21 protein_coding protein_coding MGP_AJ_T0079620.1 MGP_AJ_G0031133.1 mouse_genomes_project 6 114309701 114317714 + MGP_AJ_P0079620 Fam21 protein_coding nonsense_mediated_decay MGP_AJ_T0079621.1 MGP_AJ_G0031133.1 mouse_genomes_project 6 114309770 114365132 + Fam21 protein_coding retained_intron MGP_AJ_T0079622.1 MGP_AJ_G0031133.1 mouse_genomes_project 6 114310080 114361449 + MGP_AJ_P0079622 Fam21 protein_coding protein_coding MGP_AJ_T0079623.1 MGP_AJ_G0031133.1 mouse_genomes_project 6 114322118 114326579 + Fam21 protein_coding retained_intron MGP_AJ_T0079624.1 MGP_AJ_G0031133.1 mouse_genomes_project 6 114323443 114330198 + MGP_AJ_P0079624 Fam21 protein_coding protein_coding MGP_AJ_T0079625.1 MGP_AJ_G0031133.1 mouse_genomes_project 6 114328750 114332581 + Fam21 protein_coding retained_intron MGP_AJ_T0079626.1 MGP_AJ_G0031133.1 mouse_genomes_project 6 114358271 114359294 + Fam21 protein_coding retained_intron MGP_AJ_T0079627.1 MGP_AJ_G0031133.1 mouse_genomes_project 6 114359021 114361434 + Fam21 protein_coding retained_intron MGP_AJ_T0000148.1 MGP_AJ_G0000113.1 mouse_genomes_project 6 65226211 65226982 + MGP_AJ_P0000148 Igkv1-122 IG_V_gene IG_V_gene MGP_AJ_T0080900.1 MGP_AJ_G0031430.1 mouse_genomes_project 6 140806266 140858973 - MGP_AJ_P0080900 Slco1a4 protein_coding protein_coding MGP_AJ_T0080901.1 MGP_AJ_G0031430.1 mouse_genomes_project 6 140807548 140848241 - MGP_AJ_P0080901 Slco1a4 protein_coding protein_coding MGP_AJ_T0080902.1 MGP_AJ_G0031430.1 mouse_genomes_project 6 140807787 140848241 - MGP_AJ_P0080902 Slco1a4 protein_coding unknown_likely_coding MGP_AJ_T0080903.1 MGP_AJ_G0031430.1 mouse_genomes_project 6 140837240 140859001 - MGP_AJ_P0080903 Slco1a4 protein_coding protein_coding MGP_AJ_T0080904.1 MGP_AJ_G0031430.1 mouse_genomes_project 6 140853778 140856484 - Slco1a4 protein_coding retained_intron MGP_AJ_T0078220.1 MGP_AJ_G0030859.1 mouse_genomes_project 6 74588153 75696758 - MGP_AJ_P0078220 Ctnna2 protein_coding protein_coding MGP_AJ_T0078221.1 MGP_AJ_G0030859.1 mouse_genomes_project 6 74588153 75696758 - MGP_AJ_P0078221 Ctnna2 protein_coding protein_coding MGP_AJ_T0078222.1 MGP_AJ_G0030859.1 mouse_genomes_project 6 74588156 75696609 - MGP_AJ_P0078222 Ctnna2 protein_coding protein_coding MGP_AJ_T0078223.1 MGP_AJ_G0030859.1 mouse_genomes_project 6 74589066 75696619 - MGP_AJ_P0078223 Ctnna2 protein_coding protein_coding MGP_AJ_T0078224.1 MGP_AJ_G0030859.1 mouse_genomes_project 6 74589272 74611256 - Ctnna2 protein_coding retained_intron MGP_AJ_T0078225.1 MGP_AJ_G0030859.1 mouse_genomes_project 6 74624848 74862674 - MGP_AJ_P0078225 Ctnna2 protein_coding nonsense_mediated_decay MGP_AJ_T0078230.1 MGP_AJ_G0030859.1 mouse_genomes_project 6 75324333 75696619 - MGP_AJ_P0078230 Ctnna2 protein_coding protein_coding MGP_AJ_T0078231.1 MGP_AJ_G0030859.1 mouse_genomes_project 6 75329925 75630119 - MGP_AJ_P0078231 Ctnna2 protein_coding unknown_likely_coding MGP_AJ_T0078232.1 MGP_AJ_G0030859.1 mouse_genomes_project 6 75642184 75696644 - Ctnna2 protein_coding processed_transcript MGP_AJ_T0000212.1 MGP_AJ_G0000158.1 mouse_genomes_project 6 68243495 68244084 + MGP_AJ_P0000212 Igkv3-9 IG_V_gene IG_V_gene MGP_AJ_T0011620.1 MGP_AJ_G0009742.1 mouse_genomes_project 6 3642786 3642932 - Dlx6os1 misc_RNA misc_RNA MGP_AJ_T0008717.1 MGP_AJ_G0007042.1 mouse_genomes_project 6 113617433 113625195 - Gm44082 lincRNA lincRNA MGP_AJ_T0015478.1 MGP_AJ_G0013573.1 mouse_genomes_project 6 85879041 85879455 - processed_pseudogene processed_pseudogene MGP_AJ_T0015458.1 MGP_AJ_G0013553.1 mouse_genomes_project 6 80741531 80741889 + processed_pseudogene processed_pseudogene MGP_AJ_T0018278.1 MGP_AJ_G0015613.1 mouse_genomes_project 6 60288655 60295535 - 9330118I20Rik processed_transcript lincRNA MGP_AJ_T0018279.1 MGP_AJ_G0015613.1 mouse_genomes_project 6 60293298 60297787 - 9330118I20Rik processed_transcript retained_intron MGP_AJ_T0010797.1 MGP_AJ_G0008919.1 mouse_genomes_project 6 113186339 113186434 + Gm24767 miRNA miRNA MGP_AJ_T0080177.1 MGP_AJ_G0031247.1 mouse_genomes_project 6 123399580 123403849 - MGP_AJ_P0080177 Ptms protein_coding protein_coding MGP_AJ_T0080178.1 MGP_AJ_G0031247.1 mouse_genomes_project 6 123399587 123400577 - Ptms protein_coding processed_transcript MGP_AJ_T0080179.1 MGP_AJ_G0031247.1 mouse_genomes_project 6 123399663 123406002 - Ptms protein_coding processed_transcript MGP_AJ_T0080180.1 MGP_AJ_G0031247.1 mouse_genomes_project 6 123399948 123401127 - Ptms protein_coding retained_intron MGP_AJ_T0080181.1 MGP_AJ_G0031247.1 mouse_genomes_project 6 123400543 123401432 - Ptms protein_coding processed_transcript MGP_AJ_T0079716.1 MGP_AJ_G0031155.1 mouse_genomes_project 6 116544546 116568494 - MGP_AJ_P0079716 Zfp248 protein_coding protein_coding MGP_AJ_T0079717.1 MGP_AJ_G0031155.1 mouse_genomes_project 6 116548893 116569060 - Zfp248 protein_coding processed_transcript MGP_AJ_T0079718.1 MGP_AJ_G0031155.1 mouse_genomes_project 6 116548971 116568706 - MGP_AJ_P0079718 Zfp248 protein_coding protein_coding MGP_AJ_T0079719.1 MGP_AJ_G0031155.1 mouse_genomes_project 6 116566739 116569143 - Zfp248 protein_coding retained_intron MGP_AJ_T0079720.1 MGP_AJ_G0031155.1 mouse_genomes_project 6 116566772 116569112 - Zfp248 protein_coding retained_intron MGP_AJ_T0079721.1 MGP_AJ_G0031155.1 mouse_genomes_project 6 116566808 116568397 - Zfp248 protein_coding processed_transcript MGP_AJ_T0010771.1 MGP_AJ_G0008893.1 mouse_genomes_project 6 67587646 67587756 - Gm23694 miRNA miRNA MGP_AJ_T0008758.1 MGP_AJ_G0007076.1 mouse_genomes_project 6 133765264 133766389 - Gm44238 lincRNA lincRNA MGP_AJ_T0078569.1 MGP_AJ_G0030931.1 mouse_genomes_project 6 83785110 83789247 - MGP_AJ_P0078569 Nat8f4 protein_coding protein_coding MGP_AJ_T0078570.1 MGP_AJ_G0030931.1 mouse_genomes_project 6 83785110 83791393 - MGP_AJ_P0078570 Nat8f4 protein_coding protein_coding MGP_AJ_T0076638.1 MGP_AJ_G0030483.1 mouse_genomes_project 6 25065382 25072382 - MGP_AJ_P0076638 Pax4 protein_coding protein_coding MGP_AJ_T0076639.1 MGP_AJ_G0030483.1 mouse_genomes_project 6 25065382 25072484 - MGP_AJ_P0076639 Pax4 protein_coding protein_coding MGP_AJ_T0076640.1 MGP_AJ_G0030483.1 mouse_genomes_project 6 25065387 25072382 - MGP_AJ_P0076640 Pax4 protein_coding protein_coding MGP_AJ_T0076641.1 MGP_AJ_G0030483.1 mouse_genomes_project 6 25065423 25070268 - MGP_AJ_P0076641 Pax4 protein_coding protein_coding MGP_AJ_T0076642.1 MGP_AJ_G0030483.1 mouse_genomes_project 6 25066875 25069463 - Pax4 protein_coding retained_intron MGP_AJ_T0076643.1 MGP_AJ_G0030483.1 mouse_genomes_project 6 25067862 25070268 - Pax4 protein_coding retained_intron MGP_AJ_T0008568.1 MGP_AJ_G0006931.1 mouse_genomes_project 6 31340648 31343187 - Gm13861 lincRNA lincRNA MGP_AJ_T0004979.1 MGP_AJ_G0004269.1 mouse_genomes_project 6 70714935 70723778 + Gm44031 antisense antisense MGP_AJ_T0005074.1 MGP_AJ_G0004329.1 mouse_genomes_project 6 122882645 122884861 - Gm44096 antisense antisense MGP_AJ_T0077737.1 MGP_AJ_G0030735.1 mouse_genomes_project 6 51790528 51841669 - MGP_AJ_P0077737 Nod1 protein_coding protein_coding MGP_AJ_T0077738.1 MGP_AJ_G0030735.1 mouse_genomes_project 6 51790528 51842620 - MGP_AJ_P0077738 Nod1 protein_coding protein_coding MGP_AJ_T0077739.1 MGP_AJ_G0030735.1 mouse_genomes_project 6 51791338 51794678 - Nod1 protein_coding processed_transcript MGP_AJ_T0077740.1 MGP_AJ_G0030735.1 mouse_genomes_project 6 51794668 51810026 - MGP_AJ_P0077740 Nod1 protein_coding protein_coding MGP_AJ_T0077741.1 MGP_AJ_G0030735.1 mouse_genomes_project 6 51803926 51806424 - Nod1 protein_coding processed_transcript MGP_AJ_T0077742.1 MGP_AJ_G0030735.1 mouse_genomes_project 6 51816046 51834883 - MGP_AJ_P0077742 Nod1 protein_coding protein_coding MGP_AJ_T0077867.1 MGP_AJ_G0030782.1 mouse_genomes_project 6 54993125 54994145 - MGP_AJ_P0077867 Vmn1r26 protein_coding protein_coding MGP_AJ_T0015647.1 MGP_AJ_G0013742.1 mouse_genomes_project 6 133967774 133968148 - processed_pseudogene processed_pseudogene MGP_AJ_T0001912.1 MGP_AJ_G0001825.1 mouse_genomes_project 6 1687639 1688867 + TEC TEC MGP_AJ_T0102682.1 MGP_AJ_G0040424.1 mouse_genomes_project 6 54165667 54166025 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0101838.1 MGP_AJ_G0039736.1 mouse_genomes_project 6 8771859 8782118 - transcribed_processed_pseudogene processed_transcript MGP_AJ_T0101839.1 MGP_AJ_G0039736.1 mouse_genomes_project 6 8772051 8772611 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0078257.1 MGP_AJ_G0030870.1 mouse_genomes_project 6 79701223 79737396 + MGP_AJ_P0078257 Gcfc2 protein_coding protein_coding MGP_AJ_T0078258.1 MGP_AJ_G0030870.1 mouse_genomes_project 6 79701227 79736737 + MGP_AJ_P0078258 Gcfc2 protein_coding nonsense_mediated_decay MGP_AJ_T0078259.1 MGP_AJ_G0030870.1 mouse_genomes_project 6 79701234 79721793 + Gcfc2 protein_coding retained_intron MGP_AJ_T0078260.1 MGP_AJ_G0030870.1 mouse_genomes_project 6 79708275 79708740 + Gcfc2 protein_coding retained_intron MGP_AJ_T0078261.1 MGP_AJ_G0030870.1 mouse_genomes_project 6 79710444 79711872 + Gcfc2 protein_coding retained_intron MGP_AJ_T0078262.1 MGP_AJ_G0030870.1 mouse_genomes_project 6 79718930 79721300 + Gcfc2 protein_coding retained_intron MGP_AJ_T0078263.1 MGP_AJ_G0030870.1 mouse_genomes_project 6 79724082 79735541 + MGP_AJ_P0078263 Gcfc2 protein_coding protein_coding MGP_AJ_T0078264.1 MGP_AJ_G0030870.1 mouse_genomes_project 6 79727245 79734428 + Gcfc2 protein_coding retained_intron MGP_AJ_T0015246.1 MGP_AJ_G0013341.1 mouse_genomes_project 6 7063302 7063927 + processed_pseudogene processed_pseudogene MGP_AJ_T0078328.1 MGP_AJ_G0030884.1 mouse_genomes_project 6 80868833 80869951 + MGP_AJ_P0078328 Pcgf1 protein_coding protein_coding MGP_AJ_T0078329.1 MGP_AJ_G0030884.1 mouse_genomes_project 6 80869310 80871696 + MGP_AJ_P0078329 Pcgf1 protein_coding protein_coding MGP_AJ_T0078330.1 MGP_AJ_G0030884.1 mouse_genomes_project 6 80869354 80871688 + MGP_AJ_P0078330 Pcgf1 protein_coding protein_coding MGP_AJ_T0078331.1 MGP_AJ_G0030884.1 mouse_genomes_project 6 80869594 80871695 + MGP_AJ_P0078331 Pcgf1 protein_coding protein_coding MGP_AJ_T0078332.1 MGP_AJ_G0030884.1 mouse_genomes_project 6 80869594 80871598 + MGP_AJ_P0078332 Pcgf1 protein_coding nonsense_mediated_decay MGP_AJ_T0078333.1 MGP_AJ_G0030884.1 mouse_genomes_project 6 80869655 80871598 + MGP_AJ_P0078333 Pcgf1 protein_coding protein_coding MGP_AJ_T0078334.1 MGP_AJ_G0030884.1 mouse_genomes_project 6 80869682 80870551 + Pcgf1 protein_coding retained_intron MGP_AJ_T0078335.1 MGP_AJ_G0030884.1 mouse_genomes_project 6 80870860 80871695 + Pcgf1 protein_coding retained_intron MGP_AJ_T0077230.1 MGP_AJ_G0030600.1 mouse_genomes_project 6 38190435 38204649 - MGP_AJ_P0077230 protein_coding protein_coding MGP_AJ_T0018266.1 MGP_AJ_G0015609.1 mouse_genomes_project 6 51105787 51114948 - Gm15527 processed_transcript retained_intron MGP_AJ_T0018267.1 MGP_AJ_G0015609.1 mouse_genomes_project 6 51108213 51139053 - Gm15527 processed_transcript antisense MGP_AJ_T0018268.1 MGP_AJ_G0015609.1 mouse_genomes_project 6 51108229 51139055 - Gm15527 processed_transcript antisense MGP_AJ_T0100072.1 MGP_AJ_G0038038.1 mouse_genomes_project 6 11117157 11117263 - Gm23013 snRNA snRNA MGP_AJ_T0008661.1 MGP_AJ_G0006998.1 mouse_genomes_project 6 82232548 82243433 - Gm10445 lincRNA lincRNA MGP_AJ_T0015472.1 MGP_AJ_G0013567.1 mouse_genomes_project 6 83770931 83771567 + processed_pseudogene processed_pseudogene MGP_AJ_T0002131.1 MGP_AJ_G0002043.1 mouse_genomes_project 6 116025520 116026712 - TEC TEC MGP_AJ_T0015464.1 MGP_AJ_G0013559.1 mouse_genomes_project 6 82876688 82877082 + processed_pseudogene processed_pseudogene MGP_AJ_T0008587.1 MGP_AJ_G0006939.1 mouse_genomes_project 6 40851028 40853870 - Gm35216 lincRNA lincRNA MGP_AJ_T0078278.1 MGP_AJ_G0030875.1 mouse_genomes_project 6 80510472 80559689 - MGP_AJ_P0078278 Hk2 protein_coding protein_coding MGP_AJ_T0078279.1 MGP_AJ_G0030875.1 mouse_genomes_project 6 80510509 80511759 - Hk2 protein_coding processed_transcript MGP_AJ_T0078280.1 MGP_AJ_G0030875.1 mouse_genomes_project 6 80545985 80558659 - MGP_AJ_P0078280 Hk2 protein_coding protein_coding MGP_AJ_T0077819.1 MGP_AJ_G0030753.1 mouse_genomes_project 6 53777100 53781492 + Vmn1r4 protein_coding retained_intron MGP_AJ_T0077820.1 MGP_AJ_G0030753.1 mouse_genomes_project 6 53777107 53810951 + MGP_AJ_P0077820 Vmn1r4 protein_coding protein_coding MGP_AJ_T0077821.1 MGP_AJ_G0030753.1 mouse_genomes_project 6 53809316 53810350 + MGP_AJ_P0077821 Vmn1r4 protein_coding protein_coding MGP_AJ_T0098460.1 MGP_AJ_G0036444.1 mouse_genomes_project 6 44196522 44197067 - pseudogene pseudogene MGP_AJ_T0015625.1 MGP_AJ_G0013720.1 mouse_genomes_project 6 129947779 129947894 - processed_pseudogene processed_pseudogene MGP_AJ_T0015371.1 MGP_AJ_G0013466.1 mouse_genomes_project 6 58491067 58491491 + processed_pseudogene processed_pseudogene MGP_AJ_T0015476.1 MGP_AJ_G0013571.1 mouse_genomes_project 6 84179062 84180070 + processed_pseudogene processed_pseudogene MGP_AJ_T0000177.1 MGP_AJ_G0000134.1 mouse_genomes_project 6 66269251 66269717 + MGP_AJ_P0000177 Igkv13-85 IG_V_gene IG_V_gene MGP_AJ_T0080919.1 MGP_AJ_G0031435.1 mouse_genomes_project 6 141304931 141310470 + MGP_AJ_P0080919 Iapp protein_coding protein_coding MGP_AJ_T0080920.1 MGP_AJ_G0031435.1 mouse_genomes_project 6 141304955 141305575 + Iapp protein_coding processed_transcript MGP_AJ_T0002154.1 MGP_AJ_G0002066.1 mouse_genomes_project 6 131831903 131833727 + TEC TEC MGP_AJ_T0080925.1 MGP_AJ_G0031437.1 mouse_genomes_project 6 141357725 141395555 - MGP_AJ_P0080925 Recql protein_coding protein_coding MGP_AJ_T0080927.1 MGP_AJ_G0031437.1 mouse_genomes_project 6 141364970 141395593 - MGP_AJ_P0080927 Recql protein_coding protein_coding MGP_AJ_T0080928.1 MGP_AJ_G0031437.1 mouse_genomes_project 6 141364974 141374828 - MGP_AJ_P0080928 Recql protein_coding protein_coding MGP_AJ_T0080929.1 MGP_AJ_G0031437.1 mouse_genomes_project 6 141365883 141371686 - Recql protein_coding processed_transcript MGP_AJ_T0080930.1 MGP_AJ_G0031437.1 mouse_genomes_project 6 141369399 141395606 - MGP_AJ_P0080930 Recql protein_coding protein_coding MGP_AJ_T0080931.1 MGP_AJ_G0031437.1 mouse_genomes_project 6 141370144 141371598 - MGP_AJ_P0080931 Recql protein_coding protein_coding MGP_AJ_T0080932.1 MGP_AJ_G0031437.1 mouse_genomes_project 6 141370781 141372256 - Recql protein_coding retained_intron MGP_AJ_T0080933.1 MGP_AJ_G0031437.1 mouse_genomes_project 6 141372659 141376603 - Recql protein_coding processed_transcript MGP_AJ_T0080934.1 MGP_AJ_G0031437.1 mouse_genomes_project 6 141375357 141375769 - Recql protein_coding retained_intron MGP_AJ_T0080935.1 MGP_AJ_G0031437.1 mouse_genomes_project 6 141382858 141395493 - MGP_AJ_P0080935 Recql protein_coding protein_coding MGP_AJ_T0080936.1 MGP_AJ_G0031437.1 mouse_genomes_project 6 141382858 141395528 - MGP_AJ_P0080936 Recql protein_coding protein_coding MGP_AJ_T0080937.1 MGP_AJ_G0031437.1 mouse_genomes_project 6 141384957 141395601 - MGP_AJ_P0080937 Recql protein_coding protein_coding MGP_AJ_T0077765.1 MGP_AJ_G0030741.1 mouse_genomes_project 6 52197330 52209452 + MGP_AJ_P0077765 Aqp1 protein_coding protein_coding MGP_AJ_T0001990.1 MGP_AJ_G0001903.1 mouse_genomes_project 6 51769037 51772345 + TEC TEC MGP_AJ_T0000314.1 MGP_AJ_G0000258.1 mouse_genomes_project 6 67864151 67864385 - IG_V_pseudogene IG_V_pseudogene MGP_AJ_T0079192.1 MGP_AJ_G0031055.1 mouse_genomes_project 6 98676774 98782367 - MGP_AJ_P0079192 Shq1 protein_coding protein_coding MGP_AJ_T0079193.1 MGP_AJ_G0031055.1 mouse_genomes_project 6 98681538 98782367 - MGP_AJ_P0079193 Shq1 protein_coding protein_coding MGP_AJ_T0079194.1 MGP_AJ_G0031055.1 mouse_genomes_project 6 98681539 98782349 - MGP_AJ_P0079194 Shq1 protein_coding protein_coding MGP_AJ_T0079195.1 MGP_AJ_G0031055.1 mouse_genomes_project 6 98774048 98782343 - Shq1 protein_coding processed_transcript MGP_AJ_T0000300.1 MGP_AJ_G0000244.1 mouse_genomes_project 6 66736125 66736601 - IG_V_pseudogene IG_V_pseudogene MGP_AJ_T0000271.1 MGP_AJ_G0000215.1 mouse_genomes_project 6 64864116 64864727 - IG_V_pseudogene IG_V_pseudogene MGP_AJ_T0002114.1 MGP_AJ_G0002027.1 mouse_genomes_project 6 106663305 106664491 - TEC TEC MGP_AJ_T0002168.1 MGP_AJ_G0002080.1 mouse_genomes_project 6 139240606 139241600 - TEC TEC MGP_AJ_T0080559.1 MGP_AJ_G0031331.1 mouse_genomes_project 6 128330918 128340187 - MGP_AJ_P0080559 Gm156 protein_coding protein_coding MGP_AJ_T0080560.1 MGP_AJ_G0031331.1 mouse_genomes_project 6 128330926 128361437 - MGP_AJ_P0080560 Gm156 protein_coding protein_coding MGP_AJ_T0076610.1 MGP_AJ_G0030477.1 mouse_genomes_project 6 22359024 22430486 - MGP_AJ_P0076610 Pot1a protein_coding protein_coding MGP_AJ_T0076611.1 MGP_AJ_G0030477.1 mouse_genomes_project 6 22359788 22361484 - Pot1a protein_coding retained_intron MGP_AJ_T0076612.1 MGP_AJ_G0030477.1 mouse_genomes_project 6 22359868 22419333 - MGP_AJ_P0076612 Pot1a protein_coding protein_coding MGP_AJ_T0076613.1 MGP_AJ_G0030477.1 mouse_genomes_project 6 22364430 22430486 - Pot1a protein_coding retained_intron MGP_AJ_T0076614.1 MGP_AJ_G0030477.1 mouse_genomes_project 6 22374282 22430455 - MGP_AJ_P0076614 Pot1a protein_coding protein_coding MGP_AJ_T0076615.1 MGP_AJ_G0030477.1 mouse_genomes_project 6 22392281 22430482 - Pot1a protein_coding processed_transcript MGP_AJ_T0076616.1 MGP_AJ_G0030477.1 mouse_genomes_project 6 22415134 22430506 - Pot1a protein_coding retained_intron MGP_AJ_T0076617.1 MGP_AJ_G0030477.1 mouse_genomes_project 6 22419849 22430476 - Pot1a protein_coding retained_intron MGP_AJ_T0076618.1 MGP_AJ_G0030477.1 mouse_genomes_project 6 22421633 22422706 - Pot1a protein_coding processed_transcript MGP_AJ_T0077173.1 MGP_AJ_G0030577.1 mouse_genomes_project 6 36611157 37000889 + MGP_AJ_P0077173 Tmem178b protein_coding protein_coding MGP_AJ_T0077174.1 MGP_AJ_G0030577.1 mouse_genomes_project 6 36854390 36994251 + MGP_AJ_P0077174 Tmem178b protein_coding protein_coding MGP_AJ_T0077175.1 MGP_AJ_G0030577.1 mouse_genomes_project 6 36994714 37000964 + Tmem178b protein_coding retained_intron MGP_AJ_T0079288.1 MGP_AJ_G0031077.1 mouse_genomes_project 6 110536445 110552624 - MGP_AJ_P0079288 Oxtr protein_coding protein_coding MGP_AJ_T0079289.1 MGP_AJ_G0031077.1 mouse_genomes_project 6 110536449 110551075 - MGP_AJ_P0079289 Oxtr protein_coding protein_coding MGP_AJ_T0002124.1 MGP_AJ_G0002037.1 mouse_genomes_project 6 114032134 114032973 - TEC TEC MGP_AJ_T0010813.1 MGP_AJ_G0008935.1 mouse_genomes_project 6 126624015 126624125 - Gm26338 miRNA miRNA MGP_AJ_T0008600.1 MGP_AJ_G0006950.1 mouse_genomes_project 6 47615872 47619832 - Gm44109 lincRNA lincRNA MGP_AJ_T0080034.1 MGP_AJ_G0031217.1 mouse_genomes_project 6 122059819 122113049 + MGP_AJ_P0080034 Vmn2r23 protein_coding protein_coding MGP_AJ_T0015333.1 MGP_AJ_G0013428.1 mouse_genomes_project 6 45748499 45750040 + processed_pseudogene processed_pseudogene MGP_AJ_T0010819.1 MGP_AJ_G0008941.1 mouse_genomes_project 6 136873439 136873553 - Gm24308 miRNA miRNA MGP_AJ_T0077469.1 MGP_AJ_G0030672.1 mouse_genomes_project 6 45384315 45403751 + Gm44965 protein_coding processed_transcript MGP_AJ_T0077470.1 MGP_AJ_G0030672.1 mouse_genomes_project 6 45384318 45409770 + MGP_AJ_P0077470 Gm44965 protein_coding nonsense_mediated_decay MGP_AJ_T0008801.1 MGP_AJ_G0007105.1 mouse_genomes_project 6 147991464 147994104 + Gm26540 lincRNA lincRNA MGP_AJ_T0078725.1 MGP_AJ_G0030959.1 mouse_genomes_project 6 85372736 85413462 - Arhgap25 protein_coding retained_intron MGP_AJ_T0078726.1 MGP_AJ_G0030959.1 mouse_genomes_project 6 85372736 85451293 - MGP_AJ_P0078726 Arhgap25 protein_coding protein_coding MGP_AJ_T0078727.1 MGP_AJ_G0030959.1 mouse_genomes_project 6 85373598 85413411 - MGP_AJ_P0078727 Arhgap25 protein_coding protein_coding MGP_AJ_T0078728.1 MGP_AJ_G0030959.1 mouse_genomes_project 6 85374322 85377859 - Arhgap25 protein_coding retained_intron MGP_AJ_T0081149.1 MGP_AJ_G0031477.1 mouse_genomes_project 6 147167318 147201455 - MGP_AJ_P0081149 Ergic2 protein_coding protein_coding MGP_AJ_T0081150.1 MGP_AJ_G0031477.1 mouse_genomes_project 6 147169457 147201188 - MGP_AJ_P0081150 Ergic2 protein_coding nonsense_mediated_decay MGP_AJ_T0081151.1 MGP_AJ_G0031477.1 mouse_genomes_project 6 147169551 147177172 - MGP_AJ_P0081151 Ergic2 protein_coding protein_coding MGP_AJ_T0081152.1 MGP_AJ_G0031477.1 mouse_genomes_project 6 147169606 147171450 - MGP_AJ_P0081152 Ergic2 protein_coding nonsense_mediated_decay MGP_AJ_T0081153.1 MGP_AJ_G0031477.1 mouse_genomes_project 6 147169886 147184337 - MGP_AJ_P0081153 Ergic2 protein_coding protein_coding MGP_AJ_T0081154.1 MGP_AJ_G0031477.1 mouse_genomes_project 6 147170169 147185322 - Ergic2 protein_coding retained_intron MGP_AJ_T0081155.1 MGP_AJ_G0031477.1 mouse_genomes_project 6 147171287 147178786 - Ergic2 protein_coding retained_intron MGP_AJ_T0081156.1 MGP_AJ_G0031477.1 mouse_genomes_project 6 147171939 147201455 - Ergic2 protein_coding processed_transcript MGP_AJ_T0081157.1 MGP_AJ_G0031477.1 mouse_genomes_project 6 147177116 147185607 - Ergic2 protein_coding retained_intron MGP_AJ_T0081158.1 MGP_AJ_G0031477.1 mouse_genomes_project 6 147178579 147184320 - Ergic2 protein_coding processed_transcript MGP_AJ_T0081159.1 MGP_AJ_G0031477.1 mouse_genomes_project 6 147178625 147201103 - MGP_AJ_P0081159 Ergic2 protein_coding nonsense_mediated_decay MGP_AJ_T0081160.1 MGP_AJ_G0031477.1 mouse_genomes_project 6 147179998 147185424 - Ergic2 protein_coding processed_transcript MGP_AJ_T0081161.1 MGP_AJ_G0031477.1 mouse_genomes_project 6 147184274 147191869 - Ergic2 protein_coding retained_intron MGP_AJ_T0081162.1 MGP_AJ_G0031477.1 mouse_genomes_project 6 147188036 147201058 - Ergic2 protein_coding retained_intron MGP_AJ_T0081163.1 MGP_AJ_G0031477.1 mouse_genomes_project 6 147190571 147201103 - MGP_AJ_P0081163 Ergic2 protein_coding protein_coding MGP_AJ_T0081164.1 MGP_AJ_G0031477.1 mouse_genomes_project 6 147191326 147201102 - Ergic2 protein_coding retained_intron MGP_AJ_T0081165.1 MGP_AJ_G0031477.1 mouse_genomes_project 6 147191779 147201086 - Ergic2 protein_coding processed_transcript MGP_AJ_T0076342.1 MGP_AJ_G0030423.1 mouse_genomes_project 6 5013286 5351223 + MGP_AJ_P0076342 Gm45062 protein_coding nonsense_mediated_decay MGP_AJ_T0100073.1 MGP_AJ_G0038039.1 mouse_genomes_project 6 14087026 14087133 + Gm25021 snRNA snRNA MGP_AJ_T0102057.1 MGP_AJ_G0039843.1 mouse_genomes_project 6 129845733 129872313 - transcribed_unprocessed_pseudogene processed_transcript MGP_AJ_T0077900.1 MGP_AJ_G0030788.1 mouse_genomes_project 6 56304071 56307235 + MGP_AJ_P0077900 Tigd2 protein_coding protein_coding MGP_AJ_T0099136.1 MGP_AJ_G0037103.1 mouse_genomes_project 6 37835312 37845825 + Gm37610 sense_overlapping sense_overlapping MGP_AJ_T0078521.1 MGP_AJ_G0030919.1 mouse_genomes_project 6 83071616 83195604 - MGP_AJ_P0078521 Sfxn5 protein_coding protein_coding MGP_AJ_T0078522.1 MGP_AJ_G0030919.1 mouse_genomes_project 6 83087998 83123863 - Sfxn5 protein_coding processed_transcript MGP_AJ_T0078523.1 MGP_AJ_G0030919.1 mouse_genomes_project 6 83093108 83195601 - MGP_AJ_P0078523 Sfxn5 protein_coding protein_coding MGP_AJ_T0078524.1 MGP_AJ_G0030919.1 mouse_genomes_project 6 83127647 83195588 - Sfxn5 protein_coding retained_intron MGP_AJ_T0078525.1 MGP_AJ_G0030919.1 mouse_genomes_project 6 83154026 83195601 - Sfxn5 protein_coding processed_transcript MGP_AJ_T0078526.1 MGP_AJ_G0030919.1 mouse_genomes_project 6 83158927 83195604 - MGP_AJ_P0078526 Sfxn5 protein_coding protein_coding MGP_AJ_T0078527.1 MGP_AJ_G0030919.1 mouse_genomes_project 6 83158929 83182475 - Sfxn5 protein_coding processed_transcript MGP_AJ_T0078528.1 MGP_AJ_G0030919.1 mouse_genomes_project 6 83180839 83194932 - MGP_AJ_P0078528 Sfxn5 protein_coding protein_coding MGP_AJ_T0078529.1 MGP_AJ_G0030919.1 mouse_genomes_project 6 83191126 83195604 - Sfxn5 protein_coding retained_intron MGP_AJ_T0002127.1 MGP_AJ_G0002040.1 mouse_genomes_project 6 114746279 114749004 + TEC TEC MGP_AJ_T0002037.1 MGP_AJ_G0001950.1 mouse_genomes_project 6 80084320 80088461 - TEC TEC MGP_AJ_T0000153.1 MGP_AJ_G0000117.1 mouse_genomes_project 6 65735371 65735857 + MGP_AJ_P0000153 Igkv15-103 IG_V_gene IG_V_gene MGP_AJ_T0015626.1 MGP_AJ_G0013721.1 mouse_genomes_project 6 129969268 129970005 - processed_pseudogene processed_pseudogene MGP_AJ_T0015282.1 MGP_AJ_G0013377.1 mouse_genomes_project 6 21676237 21677033 - processed_pseudogene processed_pseudogene MGP_AJ_T0004963.1 MGP_AJ_G0004256.1 mouse_genomes_project 6 52156689 52168285 - Gm44073 antisense antisense MGP_AJ_T0101377.1 MGP_AJ_G0039343.1 mouse_genomes_project 6 121870682 121870814 - Gm22722 snoRNA snoRNA MGP_AJ_T0080587.1 MGP_AJ_G0031344.1 mouse_genomes_project 6 129976784 129991715 - MGP_AJ_P0080587 Styk1 protein_coding protein_coding MGP_AJ_T0080588.1 MGP_AJ_G0031344.1 mouse_genomes_project 6 129977772 129994254 - MGP_AJ_P0080588 Styk1 protein_coding protein_coding MGP_AJ_T0080589.1 MGP_AJ_G0031344.1 mouse_genomes_project 6 129989064 130031144 - Styk1 protein_coding processed_transcript MGP_AJ_T0080590.1 MGP_AJ_G0031344.1 mouse_genomes_project 6 130016132 130031141 - Styk1 protein_coding processed_transcript MGP_AJ_T0080591.1 MGP_AJ_G0031344.1 mouse_genomes_project 6 130029521 130031144 - Styk1 protein_coding retained_intron MGP_AJ_T0079303.1 MGP_AJ_G0031080.1 mouse_genomes_project 6 111116281 111140244 + MGP_AJ_P0079303 Thumpd3 protein_coding protein_coding MGP_AJ_T0079304.1 MGP_AJ_G0031080.1 mouse_genomes_project 6 111116358 111128018 + MGP_AJ_P0079304 Thumpd3 protein_coding protein_coding MGP_AJ_T0079305.1 MGP_AJ_G0031080.1 mouse_genomes_project 6 111116371 111132768 + Thumpd3 protein_coding retained_intron MGP_AJ_T0079306.1 MGP_AJ_G0031080.1 mouse_genomes_project 6 111116383 111119599 + Thumpd3 protein_coding retained_intron MGP_AJ_T0079307.1 MGP_AJ_G0031080.1 mouse_genomes_project 6 111116413 111118075 + Thumpd3 protein_coding retained_intron MGP_AJ_T0079308.1 MGP_AJ_G0031080.1 mouse_genomes_project 6 111116514 111117735 + MGP_AJ_P0079308 Thumpd3 protein_coding protein_coding MGP_AJ_T0079309.1 MGP_AJ_G0031080.1 mouse_genomes_project 6 111116811 111117761 + MGP_AJ_P0079309 Thumpd3 protein_coding protein_coding MGP_AJ_T0079310.1 MGP_AJ_G0031080.1 mouse_genomes_project 6 111117471 111121100 + Thumpd3 protein_coding processed_transcript MGP_AJ_T0079311.1 MGP_AJ_G0031080.1 mouse_genomes_project 6 111129926 111132992 + Thumpd3 protein_coding retained_intron MGP_AJ_T0079312.1 MGP_AJ_G0031080.1 mouse_genomes_project 6 111137396 111139867 + Thumpd3 protein_coding retained_intron MGP_AJ_T0015671.1 MGP_AJ_G0013766.1 mouse_genomes_project 6 146178367 146181458 + processed_pseudogene processed_pseudogene MGP_AJ_T0077718.1 MGP_AJ_G0030730.1 mouse_genomes_project 6 51363825 51372008 - MGP_AJ_P0077718 Scrn1 protein_coding protein_coding MGP_AJ_T0077719.1 MGP_AJ_G0030730.1 mouse_genomes_project 6 51368550 51428860 - MGP_AJ_P0077719 Scrn1 protein_coding protein_coding MGP_AJ_T0077720.1 MGP_AJ_G0030730.1 mouse_genomes_project 6 51368925 51383395 - MGP_AJ_P0077720 Scrn1 protein_coding protein_coding MGP_AJ_T0077721.1 MGP_AJ_G0030730.1 mouse_genomes_project 6 51371754 51377464 - Scrn1 protein_coding retained_intron MGP_AJ_T0077722.1 MGP_AJ_G0030730.1 mouse_genomes_project 6 51396969 51416841 - MGP_AJ_P0077722 Scrn1 protein_coding protein_coding MGP_AJ_T0077723.1 MGP_AJ_G0030730.1 mouse_genomes_project 6 51414103 51416832 - Scrn1 protein_coding processed_transcript MGP_AJ_T0077060.1 MGP_AJ_G0030554.1 mouse_genomes_project 6 34816293 34822791 + MGP_AJ_P0077060 Tmem213 protein_coding protein_coding MGP_AJ_T0005034.1 MGP_AJ_G0004302.1 mouse_genomes_project 6 91019195 91358936 + antisense antisense MGP_AJ_T0005035.1 MGP_AJ_G0004302.1 mouse_genomes_project 6 91019235 91358846 + antisense antisense MGP_AJ_T0005036.1 MGP_AJ_G0004302.1 mouse_genomes_project 6 91019445 91192792 + antisense antisense MGP_AJ_T0005037.1 MGP_AJ_G0004302.1 mouse_genomes_project 6 91019449 91193075 + antisense antisense MGP_AJ_T0005038.1 MGP_AJ_G0004302.1 mouse_genomes_project 6 91019449 91228124 + antisense antisense MGP_AJ_T0005039.1 MGP_AJ_G0004302.1 mouse_genomes_project 6 91019449 91358934 + antisense antisense MGP_AJ_T0015319.1 MGP_AJ_G0013414.1 mouse_genomes_project 6 40641520 40642403 - processed_pseudogene processed_pseudogene MGP_AJ_T0080337.1 MGP_AJ_G0031272.1 mouse_genomes_project 6 124604143 124671024 - MGP_AJ_P0080337 Ntf3 protein_coding protein_coding MGP_AJ_T0080338.1 MGP_AJ_G0031272.1 mouse_genomes_project 6 124604143 124669269 - MGP_AJ_P0080338 Ntf3 protein_coding protein_coding MGP_AJ_T0080339.1 MGP_AJ_G0031272.1 mouse_genomes_project 6 124604143 124671219 - MGP_AJ_P0080339 Ntf3 protein_coding protein_coding MGP_AJ_T0010768.1 MGP_AJ_G0008890.1 mouse_genomes_project 6 52394138 52394248 + Gm44352 miRNA miRNA MGP_AJ_T0080552.1 MGP_AJ_G0031327.1 mouse_genomes_project 6 128223016 128235242 - MGP_AJ_P0080552 protein_coding protein_coding MGP_AJ_T0010814.1 MGP_AJ_G0008936.1 mouse_genomes_project 6 127509399 127509455 - Gm27336 miRNA miRNA MGP_AJ_T0010790.1 MGP_AJ_G0008912.1 mouse_genomes_project 6 100888868 100888970 + Mir6373 miRNA miRNA MGP_AJ_T0004982.1 MGP_AJ_G0004272.1 mouse_genomes_project 6 80550139 80553144 + Gm17034 antisense antisense MGP_AJ_T0079654.1 MGP_AJ_G0031139.1 mouse_genomes_project 6 114644884 114645892 + MGP_AJ_P0079654 Olfr213 protein_coding protein_coding MGP_AJ_T0080351.1 MGP_AJ_G0031277.1 mouse_genomes_project 6 125364053 125386893 + MGP_AJ_P0080351 Akap3 protein_coding protein_coding MGP_AJ_T0080352.1 MGP_AJ_G0031277.1 mouse_genomes_project 6 125364099 125386890 + MGP_AJ_P0080352 Akap3 protein_coding protein_coding MGP_AJ_T0080353.1 MGP_AJ_G0031277.1 mouse_genomes_project 6 125364115 125386893 + MGP_AJ_P0080353 Akap3 protein_coding protein_coding MGP_AJ_T0011627.1 MGP_AJ_G0009749.1 mouse_genomes_project 6 14347138 14347394 + Gm27542 misc_RNA misc_RNA MGP_AJ_T0004910.1 MGP_AJ_G0004215.1 mouse_genomes_project 6 15077810 15081008 + Gm15594 antisense antisense MGP_AJ_T0001948.1 MGP_AJ_G0001861.1 mouse_genomes_project 6 30383049 30385177 - TEC TEC MGP_AJ_T0080859.1 MGP_AJ_G0031422.1 mouse_genomes_project 6 138963319 138964226 + Capza3 protein_coding processed_transcript MGP_AJ_T0080860.1 MGP_AJ_G0031422.1 mouse_genomes_project 6 138963624 138964846 + MGP_AJ_P0080860 Capza3 protein_coding protein_coding MGP_AJ_T0002169.1 MGP_AJ_G0002081.1 mouse_genomes_project 6 139254902 139255572 + TEC TEC MGP_AJ_T0101397.1 MGP_AJ_G0039363.1 mouse_genomes_project 6 147964529 147964651 + Gm25539 snoRNA snoRNA MGP_AJ_T0080719.1 MGP_AJ_G0031396.1 mouse_genomes_project 6 134539701 135007222 - MGP_AJ_P0080719 Grin2b protein_coding protein_coding MGP_AJ_T0080720.1 MGP_AJ_G0031396.1 mouse_genomes_project 6 134556066 135007677 - MGP_AJ_P0080720 Grin2b protein_coding protein_coding MGP_AJ_T0080721.1 MGP_AJ_G0031396.1 mouse_genomes_project 6 134695805 135007677 - MGP_AJ_P0080721 Grin2b protein_coding protein_coding MGP_AJ_T0080722.1 MGP_AJ_G0031396.1 mouse_genomes_project 6 134878897 135005985 - MGP_AJ_P0080722 Grin2b protein_coding protein_coding MGP_AJ_T0080723.1 MGP_AJ_G0031396.1 mouse_genomes_project 6 134878900 135007677 - MGP_AJ_P0080723 Grin2b protein_coding protein_coding MGP_AJ_T0080724.1 MGP_AJ_G0031396.1 mouse_genomes_project 6 134878900 135007677 - MGP_AJ_P0080724 Grin2b protein_coding protein_coding MGP_AJ_T0080725.1 MGP_AJ_G0031396.1 mouse_genomes_project 6 135005858 135007544 - Grin2b protein_coding processed_transcript MGP_AJ_T0015340.1 MGP_AJ_G0013435.1 mouse_genomes_project 6 46087058 46087624 + processed_pseudogene processed_pseudogene MGP_AJ_T0002558.1 MGP_AJ_G0002460.1 mouse_genomes_project 6 38295412 38295460 + MGP_AJ_P0002558 Trbj1-1 TR_J_gene TR_J_gene MGP_AJ_T0001927.1 MGP_AJ_G0001840.1 mouse_genomes_project 6 14767141 14768961 - TEC TEC MGP_AJ_T0078027.1 MGP_AJ_G0030823.1 mouse_genomes_project 6 68908728 68913921 + MGP_AJ_P0078027 Fabp1 protein_coding protein_coding MGP_AJ_T0077306.1 MGP_AJ_G0030625.1 mouse_genomes_project 6 39165410 39166340 + MGP_AJ_P0077306 Tas2r126 protein_coding protein_coding MGP_AJ_T0077637.1 MGP_AJ_G0030714.1 mouse_genomes_project 6 49042141 49044568 - MGP_AJ_P0077637 Hoxa6 protein_coding protein_coding MGP_AJ_T0015520.1 MGP_AJ_G0013615.1 mouse_genomes_project 6 103169020 103170918 - processed_pseudogene processed_pseudogene MGP_AJ_T0076263.1 MGP_AJ_G0030404.1 mouse_genomes_project 6 1641864 1908728 + MGP_AJ_P0076263 Ppp1r9a protein_coding protein_coding MGP_AJ_T0076264.1 MGP_AJ_G0030404.1 mouse_genomes_project 6 1641921 1821665 + MGP_AJ_P0076264 Ppp1r9a protein_coding protein_coding MGP_AJ_T0076265.1 MGP_AJ_G0030404.1 mouse_genomes_project 6 1641965 1909359 + MGP_AJ_P0076265 Ppp1r9a protein_coding nonsense_mediated_decay MGP_AJ_T0076266.1 MGP_AJ_G0030404.1 mouse_genomes_project 6 1642267 1914801 + MGP_AJ_P0076266 Ppp1r9a protein_coding protein_coding MGP_AJ_T0076267.1 MGP_AJ_G0030404.1 mouse_genomes_project 6 1642320 1752037 + MGP_AJ_P0076267 Ppp1r9a protein_coding protein_coding MGP_AJ_T0076268.1 MGP_AJ_G0030404.1 mouse_genomes_project 6 1642379 1913654 + Ppp1r9a protein_coding retained_intron MGP_AJ_T0076269.1 MGP_AJ_G0030404.1 mouse_genomes_project 6 1642735 1645735 + MGP_AJ_P0076269 Ppp1r9a protein_coding protein_coding MGP_AJ_T0076270.1 MGP_AJ_G0030404.1 mouse_genomes_project 6 1644363 1908947 + MGP_AJ_P0076270 Ppp1r9a protein_coding nonsense_mediated_decay MGP_AJ_T0076271.1 MGP_AJ_G0030404.1 mouse_genomes_project 6 1644363 1908955 + MGP_AJ_P0076271 Ppp1r9a protein_coding protein_coding MGP_AJ_T0076272.1 MGP_AJ_G0030404.1 mouse_genomes_project 6 1645354 1903388 + MGP_AJ_P0076272 Ppp1r9a protein_coding nonsense_mediated_decay MGP_AJ_T0076273.1 MGP_AJ_G0030404.1 mouse_genomes_project 6 1854752 1857881 + Ppp1r9a protein_coding processed_transcript MGP_AJ_T0076274.1 MGP_AJ_G0030404.1 mouse_genomes_project 6 1857552 1860602 + Ppp1r9a protein_coding retained_intron MGP_AJ_T0001929.1 MGP_AJ_G0001842.1 mouse_genomes_project 6 17930614 17937321 + TEC TEC MGP_AJ_T0078949.1 MGP_AJ_G0031008.1 mouse_genomes_project 6 88640755 88682406 + MGP_AJ_P0078949 Slc41a3 protein_coding protein_coding MGP_AJ_T0078950.1 MGP_AJ_G0031008.1 mouse_genomes_project 6 88655132 88682406 + MGP_AJ_P0078950 Slc41a3 protein_coding protein_coding MGP_AJ_T0102665.1 MGP_AJ_G0040407.1 mouse_genomes_project 6 31075851 31076830 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0079054.1 MGP_AJ_G0031027.1 mouse_genomes_project 6 90311138 90313725 - MGP_AJ_P0079054 Trh protein_coding protein_coding MGP_AJ_T0102704.1 MGP_AJ_G0040446.1 mouse_genomes_project 6 87793003 87793988 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0000188.1 MGP_AJ_G0000142.1 mouse_genomes_project 6 67517675 67518237 - MGP_AJ_P0000188 Igkv5-37 IG_V_gene IG_V_gene MGP_AJ_T0008574.1 MGP_AJ_G0006935.1 mouse_genomes_project 6 32888007 33059743 - lincRNA lincRNA MGP_AJ_T0008575.1 MGP_AJ_G0006935.1 mouse_genomes_project 6 32890374 32947604 - lincRNA lincRNA MGP_AJ_T0008576.1 MGP_AJ_G0006935.1 mouse_genomes_project 6 32941468 33059984 - lincRNA lincRNA MGP_AJ_T0008577.1 MGP_AJ_G0006935.1 mouse_genomes_project 6 33009857 33060126 - lincRNA lincRNA MGP_AJ_T0008578.1 MGP_AJ_G0006935.1 mouse_genomes_project 6 33059270 33060180 - lincRNA lincRNA MGP_AJ_T0008579.1 MGP_AJ_G0006935.1 mouse_genomes_project 6 33059272 33062083 - lincRNA lincRNA MGP_AJ_T0008580.1 MGP_AJ_G0006935.1 mouse_genomes_project 6 33059279 33060809 - lincRNA lincRNA MGP_AJ_T0008581.1 MGP_AJ_G0006935.1 mouse_genomes_project 6 33059557 33061319 - lincRNA lincRNA MGP_AJ_T0008582.1 MGP_AJ_G0006935.1 mouse_genomes_project 6 33059631 33060950 - lincRNA lincRNA MGP_AJ_T0008711.1 MGP_AJ_G0007036.1 mouse_genomes_project 6 105699863 105704640 + 4933431M02Rik lincRNA lincRNA MGP_AJ_T0015538.1 MGP_AJ_G0013633.1 mouse_genomes_project 6 111058316 111058443 - processed_pseudogene processed_pseudogene MGP_AJ_T0101353.1 MGP_AJ_G0039319.1 mouse_genomes_project 6 65489430 65489575 - Gm25436 snoRNA snoRNA MGP_AJ_T0098713.1 MGP_AJ_G0036697.1 mouse_genomes_project 6 110303571 110303671 - n-R5s165 rRNA rRNA MGP_AJ_T0098459.1 MGP_AJ_G0036443.1 mouse_genomes_project 6 3504851 3506029 - pseudogene pseudogene MGP_AJ_T0004974.1 MGP_AJ_G0004266.1 mouse_genomes_project 6 70069103 70070533 - Gm45051 antisense antisense MGP_AJ_T0077524.1 MGP_AJ_G0030686.1 mouse_genomes_project 6 45664241 45697347 + MGP_AJ_P0077524 Aoc1 protein_coding protein_coding MGP_AJ_T0077525.1 MGP_AJ_G0030686.1 mouse_genomes_project 6 45686720 45700659 + MGP_AJ_P0077525 Aoc1 protein_coding protein_coding MGP_AJ_T0077526.1 MGP_AJ_G0030686.1 mouse_genomes_project 6 45696456 45700658 + MGP_AJ_P0077526 Aoc1 protein_coding protein_coding MGP_AJ_T0077527.1 MGP_AJ_G0030686.1 mouse_genomes_project 6 45696456 45700658 + MGP_AJ_P0077527 Aoc1 protein_coding protein_coding MGP_AJ_T0077528.1 MGP_AJ_G0030686.1 mouse_genomes_project 6 45698825 45700122 + Aoc1 protein_coding retained_intron MGP_AJ_T0015606.1 MGP_AJ_G0013701.1 mouse_genomes_project 6 126991494 126992768 - processed_pseudogene processed_pseudogene MGP_AJ_T0101392.1 MGP_AJ_G0039358.1 mouse_genomes_project 6 142499815 142499944 - Gm23272 snoRNA snoRNA MGP_AJ_T0011639.1 MGP_AJ_G0009761.1 mouse_genomes_project 6 44541320 44541432 - Rny1 misc_RNA misc_RNA MGP_AJ_T0015413.1 MGP_AJ_G0013508.1 mouse_genomes_project 6 64656503 64657759 - processed_pseudogene processed_pseudogene MGP_AJ_T0076600.1 MGP_AJ_G0030473.1 mouse_genomes_project 6 21423621 21433483 + MGP_AJ_P0076600 Spam1 protein_coding protein_coding MGP_AJ_T0076601.1 MGP_AJ_G0030473.1 mouse_genomes_project 6 21423634 21433483 + MGP_AJ_P0076601 Spam1 protein_coding protein_coding MGP_AJ_T0076602.1 MGP_AJ_G0030473.1 mouse_genomes_project 6 21423648 21429484 + Spam1 protein_coding retained_intron MGP_AJ_T0076603.1 MGP_AJ_G0030473.1 mouse_genomes_project 6 21428257 21433483 + MGP_AJ_P0076603 Spam1 protein_coding protein_coding MGP_AJ_T0004916.1 MGP_AJ_G0004220.1 mouse_genomes_project 6 27240892 27243775 - Gm13781 antisense antisense MGP_AJ_T0102699.1 MGP_AJ_G0040441.1 mouse_genomes_project 6 71103622 71104527 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0001999.1 MGP_AJ_G0001912.1 mouse_genomes_project 6 68586850 68589299 - TEC TEC MGP_AJ_T0077834.1 MGP_AJ_G0030766.1 mouse_genomes_project 6 54245091 54246071 - MGP_AJ_P0077834 Vmn1r17 protein_coding protein_coding MGP_AJ_T0080613.1 MGP_AJ_G0031360.1 mouse_genomes_project 6 131413347 131414381 - MGP_AJ_P0080613 Tas2r115 protein_coding protein_coding MGP_AJ_T0077482.1 MGP_AJ_G0030677.1 mouse_genomes_project 6 45475381 45482209 + MGP_AJ_P0077482 Gimap4 protein_coding protein_coding MGP_AJ_T0077483.1 MGP_AJ_G0030677.1 mouse_genomes_project 6 45475410 45482891 + MGP_AJ_P0077483 Gimap4 protein_coding protein_coding MGP_AJ_T0077484.1 MGP_AJ_G0030677.1 mouse_genomes_project 6 45475410 45482891 + MGP_AJ_P0077484 Gimap4 protein_coding protein_coding MGP_AJ_T0077485.1 MGP_AJ_G0030677.1 mouse_genomes_project 6 45475413 45482708 + MGP_AJ_P0077485 Gimap4 protein_coding protein_coding MGP_AJ_T0077486.1 MGP_AJ_G0030677.1 mouse_genomes_project 6 45475413 45482888 + MGP_AJ_P0077486 Gimap4 protein_coding nonsense_mediated_decay MGP_AJ_T0077487.1 MGP_AJ_G0030677.1 mouse_genomes_project 6 45475414 45482891 + MGP_AJ_P0077487 Gimap4 protein_coding protein_coding MGP_AJ_T0005100.1 MGP_AJ_G0004351.1 mouse_genomes_project 6 133587444 133588395 + Gm44025 antisense antisense MGP_AJ_T0002121.1 MGP_AJ_G0002034.1 mouse_genomes_project 6 111770044 111770582 + TEC TEC MGP_AJ_T0002152.1 MGP_AJ_G0002064.1 mouse_genomes_project 6 128291548 128292055 - TEC TEC MGP_AJ_T0080618.1 MGP_AJ_G0031365.1 mouse_genomes_project 6 131539090 131540008 + MGP_AJ_P0080618 Tas2r116 protein_coding protein_coding MGP_AJ_T0005096.1 MGP_AJ_G0004347.1 mouse_genomes_project 6 127625629 127628184 - Gm44000 antisense antisense MGP_AJ_T0015254.1 MGP_AJ_G0013349.1 mouse_genomes_project 6 10682735 10683083 + processed_pseudogene processed_pseudogene MGP_AJ_T0010762.1 MGP_AJ_G0008884.1 mouse_genomes_project 6 44801020 44801113 + Gm24563 miRNA miRNA MGP_AJ_T0000305.1 MGP_AJ_G0000249.1 mouse_genomes_project 6 67005784 67006102 + IG_V_pseudogene IG_V_pseudogene MGP_AJ_T0078598.1 MGP_AJ_G0030936.1 mouse_genomes_project 6 83921807 83991835 + Add2 protein_coding retained_intron MGP_AJ_T0078599.1 MGP_AJ_G0030936.1 mouse_genomes_project 6 83921830 84019110 + MGP_AJ_P0078599 Add2 protein_coding protein_coding MGP_AJ_T0078600.1 MGP_AJ_G0030936.1 mouse_genomes_project 6 83921873 84004189 + MGP_AJ_P0078600 Add2 protein_coding protein_coding MGP_AJ_T0078601.1 MGP_AJ_G0030936.1 mouse_genomes_project 6 83946228 83988124 + MGP_AJ_P0078601 Add2 protein_coding protein_coding MGP_AJ_T0078602.1 MGP_AJ_G0030936.1 mouse_genomes_project 6 83972702 84014269 + MGP_AJ_P0078602 Add2 protein_coding protein_coding MGP_AJ_T0078603.1 MGP_AJ_G0030936.1 mouse_genomes_project 6 83972702 84004187 + MGP_AJ_P0078603 Add2 protein_coding protein_coding MGP_AJ_T0078604.1 MGP_AJ_G0030936.1 mouse_genomes_project 6 83972729 84014269 + MGP_AJ_P0078604 Add2 protein_coding protein_coding MGP_AJ_T0078605.1 MGP_AJ_G0030936.1 mouse_genomes_project 6 83977446 84013540 + MGP_AJ_P0078605 Add2 protein_coding protein_coding MGP_AJ_T0078606.1 MGP_AJ_G0030936.1 mouse_genomes_project 6 83977446 84003018 + MGP_AJ_P0078606 Add2 protein_coding protein_coding MGP_AJ_T0078607.1 MGP_AJ_G0030936.1 mouse_genomes_project 6 83980517 84013516 + MGP_AJ_P0078607 Add2 protein_coding protein_coding MGP_AJ_T0099073.1 MGP_AJ_G0037046.1 mouse_genomes_project 6 81768406 81771179 + Gm43920 sense_intronic sense_intronic MGP_AJ_T0076994.1 MGP_AJ_G0030539.1 mouse_genomes_project 6 31612135 31631341 + MGP_AJ_P0076994 Stra8 protein_coding protein_coding MGP_AJ_T0076995.1 MGP_AJ_G0030539.1 mouse_genomes_project 6 31612932 31631339 + MGP_AJ_P0076995 Stra8 protein_coding protein_coding MGP_AJ_T0076996.1 MGP_AJ_G0030539.1 mouse_genomes_project 6 31612976 31625358 + MGP_AJ_P0076996 Stra8 protein_coding protein_coding MGP_AJ_T0076997.1 MGP_AJ_G0030539.1 mouse_genomes_project 6 31612982 31631339 + MGP_AJ_P0076997 Stra8 protein_coding protein_coding MGP_AJ_T0102037.1 MGP_AJ_G0039832.1 mouse_genomes_project 6 54594388 54594605 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_AJ_T0078342.1 MGP_AJ_G0030888.1 mouse_genomes_project 6 80900197 80901097 + MGP_AJ_P0078342 Mrpl53 protein_coding protein_coding MGP_AJ_T0078343.1 MGP_AJ_G0030888.1 mouse_genomes_project 6 80900277 80901097 + Mrpl53 protein_coding retained_intron MGP_AJ_T0015366.1 MGP_AJ_G0013461.1 mouse_genomes_project 6 56295245 56295449 - processed_pseudogene processed_pseudogene MGP_AJ_T0079149.1 MGP_AJ_G0031049.1 mouse_genomes_project 6 97002404 97345844 - MGP_AJ_P0079149 Foxp1 protein_coding protein_coding MGP_AJ_T0079150.1 MGP_AJ_G0031049.1 mouse_genomes_project 6 97002408 97517328 - MGP_AJ_P0079150 Foxp1 protein_coding protein_coding MGP_AJ_T0079151.1 MGP_AJ_G0031049.1 mouse_genomes_project 6 97002481 97006852 - Foxp1 protein_coding processed_transcript MGP_AJ_T0079152.1 MGP_AJ_G0031049.1 mouse_genomes_project 6 97006255 97605175 - MGP_AJ_P0079152 Foxp1 protein_coding protein_coding MGP_AJ_T0079153.1 MGP_AJ_G0031049.1 mouse_genomes_project 6 97007156 97240773 - MGP_AJ_P0079153 Foxp1 protein_coding protein_coding MGP_AJ_T0079154.1 MGP_AJ_G0031049.1 mouse_genomes_project 6 97007156 97240773 - MGP_AJ_P0079154 Foxp1 protein_coding protein_coding MGP_AJ_T0079155.1 MGP_AJ_G0031049.1 mouse_genomes_project 6 97007156 97240773 - MGP_AJ_P0079155 Foxp1 protein_coding protein_coding MGP_AJ_T0079156.1 MGP_AJ_G0031049.1 mouse_genomes_project 6 97007156 97240773 - MGP_AJ_P0079156 Foxp1 protein_coding nonsense_mediated_decay MGP_AJ_T0079157.1 MGP_AJ_G0031049.1 mouse_genomes_project 6 97007156 97240773 - MGP_AJ_P0079157 Foxp1 protein_coding protein_coding MGP_AJ_T0079158.1 MGP_AJ_G0031049.1 mouse_genomes_project 6 97007156 97517328 - MGP_AJ_P0079158 Foxp1 protein_coding protein_coding MGP_AJ_T0079159.1 MGP_AJ_G0031049.1 mouse_genomes_project 6 97007156 97105293 - MGP_AJ_P0079159 Foxp1 protein_coding protein_coding MGP_AJ_T0079160.1 MGP_AJ_G0031049.1 mouse_genomes_project 6 97007156 97240773 - MGP_AJ_P0079160 Foxp1 protein_coding protein_coding MGP_AJ_T0079161.1 MGP_AJ_G0031049.1 mouse_genomes_project 6 97007156 97240773 - MGP_AJ_P0079161 Foxp1 protein_coding protein_coding MGP_AJ_T0079162.1 MGP_AJ_G0031049.1 mouse_genomes_project 6 97007156 97517328 - MGP_AJ_P0079162 Foxp1 protein_coding protein_coding MGP_AJ_T0079163.1 MGP_AJ_G0031049.1 mouse_genomes_project 6 97007237 97012612 - Foxp1 protein_coding retained_intron MGP_AJ_T0079164.1 MGP_AJ_G0031049.1 mouse_genomes_project 6 97022600 97105347 - MGP_AJ_P0079164 Foxp1 protein_coding protein_coding MGP_AJ_T0079165.1 MGP_AJ_G0031049.1 mouse_genomes_project 6 97029267 97080732 - Foxp1 protein_coding retained_intron MGP_AJ_T0079166.1 MGP_AJ_G0031049.1 mouse_genomes_project 6 97080251 97105976 - MGP_AJ_P0079166 Foxp1 protein_coding protein_coding MGP_AJ_T0079167.1 MGP_AJ_G0031049.1 mouse_genomes_project 6 97080444 97120881 - MGP_AJ_P0079167 Foxp1 protein_coding protein_coding MGP_AJ_T0079168.1 MGP_AJ_G0031049.1 mouse_genomes_project 6 97083736 97105300 - Foxp1 protein_coding processed_transcript MGP_AJ_T0079169.1 MGP_AJ_G0031049.1 mouse_genomes_project 6 97086984 97172682 - MGP_AJ_P0079169 Foxp1 protein_coding protein_coding MGP_AJ_T0079170.1 MGP_AJ_G0031049.1 mouse_genomes_project 6 97086995 97120864 - MGP_AJ_P0079170 Foxp1 protein_coding protein_coding MGP_AJ_T0079171.1 MGP_AJ_G0031049.1 mouse_genomes_project 6 97093598 97105025 - MGP_AJ_P0079171 Foxp1 protein_coding protein_coding MGP_AJ_T0079172.1 MGP_AJ_G0031049.1 mouse_genomes_project 6 97152438 97327695 - MGP_AJ_P0079172 Foxp1 protein_coding protein_coding MGP_AJ_T0079173.1 MGP_AJ_G0031049.1 mouse_genomes_project 6 97229250 97345844 - Foxp1 protein_coding processed_transcript MGP_AJ_T0079174.1 MGP_AJ_G0031049.1 mouse_genomes_project 6 97239694 97345861 - Foxp1 protein_coding retained_intron MGP_AJ_T0079175.1 MGP_AJ_G0031049.1 mouse_genomes_project 6 97239694 97345861 - Foxp1 protein_coding retained_intron MGP_AJ_T0079176.1 MGP_AJ_G0031049.1 mouse_genomes_project 6 97240683 97605340 - MGP_AJ_P0079176 Foxp1 protein_coding protein_coding MGP_AJ_T0079178.1 MGP_AJ_G0031049.1 mouse_genomes_project 6 97339711 97606817 - Foxp1 protein_coding processed_transcript MGP_AJ_T0079179.1 MGP_AJ_G0031049.1 mouse_genomes_project 6 97388462 97518378 - Foxp1 protein_coding processed_transcript MGP_AJ_T0079182.1 MGP_AJ_G0031049.1 mouse_genomes_project 6 97517218 97606891 - Foxp1 protein_coding processed_transcript MGP_AJ_T0080240.1 MGP_AJ_G0031255.1 mouse_genomes_project 6 123579593 123615038 + MGP_AJ_P0080240 Chd4 protein_coding protein_coding MGP_AJ_T0080241.1 MGP_AJ_G0031255.1 mouse_genomes_project 6 123579593 123615032 + MGP_AJ_P0080241 Chd4 protein_coding protein_coding MGP_AJ_T0080242.1 MGP_AJ_G0031255.1 mouse_genomes_project 6 123579774 123615038 + MGP_AJ_P0080242 Chd4 protein_coding protein_coding MGP_AJ_T0080243.1 MGP_AJ_G0031255.1 mouse_genomes_project 6 123579789 123581022 + Chd4 protein_coding retained_intron MGP_AJ_T0080244.1 MGP_AJ_G0031255.1 mouse_genomes_project 6 123580219 123584155 + MGP_AJ_P0080244 Chd4 protein_coding protein_coding MGP_AJ_T0080245.1 MGP_AJ_G0031255.1 mouse_genomes_project 6 123597608 123598689 + Chd4 protein_coding retained_intron MGP_AJ_T0080246.1 MGP_AJ_G0031255.1 mouse_genomes_project 6 123597636 123606203 + MGP_AJ_P0080246 Chd4 protein_coding protein_coding MGP_AJ_T0080247.1 MGP_AJ_G0031255.1 mouse_genomes_project 6 123604022 123605126 + Chd4 protein_coding retained_intron MGP_AJ_T0077021.1 MGP_AJ_G0030544.1 mouse_genomes_project 6 32007905 32020733 - MGP_AJ_P0077021 Fam180a protein_coding protein_coding MGP_AJ_T0015515.1 MGP_AJ_G0013610.1 mouse_genomes_project 6 101268677 101268830 + processed_pseudogene processed_pseudogene MGP_AJ_T0079565.1 MGP_AJ_G0031124.1 mouse_genomes_project 6 113870548 113906012 + MGP_AJ_P0079565 Cand2 protein_coding protein_coding MGP_AJ_T0080107.1 MGP_AJ_G0031236.1 mouse_genomes_project 6 123251091 123254647 - Eno2 protein_coding retained_intron MGP_AJ_T0080108.1 MGP_AJ_G0031236.1 mouse_genomes_project 6 123251093 123260663 - MGP_AJ_P0080108 Eno2 protein_coding protein_coding MGP_AJ_T0080109.1 MGP_AJ_G0031236.1 mouse_genomes_project 6 123251093 123260715 - MGP_AJ_P0080109 Eno2 protein_coding protein_coding MGP_AJ_T0080110.1 MGP_AJ_G0031236.1 mouse_genomes_project 6 123251403 123259379 - Eno2 protein_coding retained_intron MGP_AJ_T0080111.1 MGP_AJ_G0031236.1 mouse_genomes_project 6 123251959 123260562 - MGP_AJ_P0080111 Eno2 protein_coding protein_coding MGP_AJ_T0080112.1 MGP_AJ_G0031236.1 mouse_genomes_project 6 123252192 123254321 - Eno2 protein_coding retained_intron MGP_AJ_T0080113.1 MGP_AJ_G0031236.1 mouse_genomes_project 6 123252251 123254357 - Eno2 protein_coding retained_intron MGP_AJ_T0080114.1 MGP_AJ_G0031236.1 mouse_genomes_project 6 123253691 123254956 - Eno2 protein_coding processed_transcript MGP_AJ_T0080115.1 MGP_AJ_G0031236.1 mouse_genomes_project 6 123254801 123259372 - MGP_AJ_P0080115 Eno2 protein_coding nonsense_mediated_decay MGP_AJ_T0080116.1 MGP_AJ_G0031236.1 mouse_genomes_project 6 123254904 123259418 - MGP_AJ_P0080116 Eno2 protein_coding protein_coding MGP_AJ_T0080117.1 MGP_AJ_G0031236.1 mouse_genomes_project 6 123257182 123260526 - MGP_AJ_P0080117 Eno2 protein_coding nonsense_mediated_decay MGP_AJ_T0080118.1 MGP_AJ_G0031236.1 mouse_genomes_project 6 123257263 123259373 - MGP_AJ_P0080118 Eno2 protein_coding nonsense_mediated_decay MGP_AJ_T0080119.1 MGP_AJ_G0031236.1 mouse_genomes_project 6 123257326 123260592 - MGP_AJ_P0080119 Eno2 protein_coding protein_coding MGP_AJ_T0080120.1 MGP_AJ_G0031236.1 mouse_genomes_project 6 123257811 123259379 - Eno2 protein_coding retained_intron MGP_AJ_T0080121.1 MGP_AJ_G0031236.1 mouse_genomes_project 6 123257989 123260558 - Eno2 protein_coding retained_intron MGP_AJ_T0080122.1 MGP_AJ_G0031236.1 mouse_genomes_project 6 123258749 123260528 - MGP_AJ_P0080122 Eno2 protein_coding protein_coding MGP_AJ_T0077480.1 MGP_AJ_G0030676.1 mouse_genomes_project 6 45467205 45469776 + MGP_AJ_P0077480 Gimap9 protein_coding protein_coding MGP_AJ_T0077481.1 MGP_AJ_G0030676.1 mouse_genomes_project 6 45468587 45470188 + MGP_AJ_P0077481 Gimap9 protein_coding protein_coding MGP_AJ_T0101354.1 MGP_AJ_G0039320.1 mouse_genomes_project 6 65830832 65830965 + Gm25833 snoRNA snoRNA MGP_AJ_T0015627.1 MGP_AJ_G0013722.1 mouse_genomes_project 6 130107022 130108880 - processed_pseudogene processed_pseudogene MGP_AJ_T0076964.1 MGP_AJ_G0030535.1 mouse_genomes_project 6 31472978 31538882 + Agbl3 protein_coding retained_intron MGP_AJ_T0076965.1 MGP_AJ_G0030535.1 mouse_genomes_project 6 31472978 31549648 + MGP_AJ_P0076965 Agbl3 protein_coding protein_coding MGP_AJ_T0076966.1 MGP_AJ_G0030535.1 mouse_genomes_project 6 31472978 31549648 + MGP_AJ_P0076966 Agbl3 protein_coding protein_coding MGP_AJ_T0076967.1 MGP_AJ_G0030535.1 mouse_genomes_project 6 31472988 31495988 + MGP_AJ_P0076967 Agbl3 protein_coding nonsense_mediated_decay MGP_AJ_T0076968.1 MGP_AJ_G0030535.1 mouse_genomes_project 6 31472998 31491241 + Agbl3 protein_coding retained_intron MGP_AJ_T0076969.1 MGP_AJ_G0030535.1 mouse_genomes_project 6 31473394 31551175 + MGP_AJ_P0076969 Agbl3 protein_coding nonsense_mediated_decay MGP_AJ_T0076970.1 MGP_AJ_G0030535.1 mouse_genomes_project 6 31473421 31497830 + Agbl3 protein_coding retained_intron MGP_AJ_T0076971.1 MGP_AJ_G0030535.1 mouse_genomes_project 6 31473421 31478266 + MGP_AJ_P0076971 Agbl3 protein_coding protein_coding MGP_AJ_T0076972.1 MGP_AJ_G0030535.1 mouse_genomes_project 6 31473422 31493809 + Agbl3 protein_coding retained_intron MGP_AJ_T0076973.1 MGP_AJ_G0030535.1 mouse_genomes_project 6 31473435 31478191 + MGP_AJ_P0076973 Agbl3 protein_coding protein_coding MGP_AJ_T0076974.1 MGP_AJ_G0030535.1 mouse_genomes_project 6 31473436 31478230 + MGP_AJ_P0076974 Agbl3 protein_coding protein_coding MGP_AJ_T0015262.1 MGP_AJ_G0013357.1 mouse_genomes_project 6 14799026 14800054 + processed_pseudogene processed_pseudogene MGP_AJ_T0080272.1 MGP_AJ_G0031259.1 mouse_genomes_project 6 123652961 123654244 - Ncapd2 protein_coding retained_intron MGP_AJ_T0080273.1 MGP_AJ_G0031259.1 mouse_genomes_project 6 123652961 123676793 - MGP_AJ_P0080273 Ncapd2 protein_coding protein_coding MGP_AJ_T0080274.1 MGP_AJ_G0031259.1 mouse_genomes_project 6 123654798 123656084 - Ncapd2 protein_coding retained_intron MGP_AJ_T0080275.1 MGP_AJ_G0031259.1 mouse_genomes_project 6 123655934 123656800 - Ncapd2 protein_coding retained_intron MGP_AJ_T0080276.1 MGP_AJ_G0031259.1 mouse_genomes_project 6 123656045 123658909 - Ncapd2 protein_coding retained_intron MGP_AJ_T0080277.1 MGP_AJ_G0031259.1 mouse_genomes_project 6 123656825 123658891 - Ncapd2 protein_coding retained_intron MGP_AJ_T0080278.1 MGP_AJ_G0031259.1 mouse_genomes_project 6 123658355 123659530 - Ncapd2 protein_coding retained_intron MGP_AJ_T0080279.1 MGP_AJ_G0031259.1 mouse_genomes_project 6 123658450 123661755 - Ncapd2 protein_coding retained_intron MGP_AJ_T0080280.1 MGP_AJ_G0031259.1 mouse_genomes_project 6 123660812 123662407 - Ncapd2 protein_coding retained_intron MGP_AJ_T0080281.1 MGP_AJ_G0031259.1 mouse_genomes_project 6 123662230 123664462 - Ncapd2 protein_coding retained_intron MGP_AJ_T0080282.1 MGP_AJ_G0031259.1 mouse_genomes_project 6 123669343 123676695 - MGP_AJ_P0080282 Ncapd2 protein_coding nonsense_mediated_decay MGP_AJ_T0080283.1 MGP_AJ_G0031259.1 mouse_genomes_project 6 123669567 123671643 - Ncapd2 protein_coding retained_intron MGP_AJ_T0080284.1 MGP_AJ_G0031259.1 mouse_genomes_project 6 123670840 123676582 - MGP_AJ_P0080284 Ncapd2 protein_coding protein_coding MGP_AJ_T0077104.1 MGP_AJ_G0030563.1 mouse_genomes_project 6 35378257 35397014 + MGP_AJ_P0077104 Clec2l protein_coding protein_coding MGP_AJ_T0015582.1 MGP_AJ_G0013677.1 mouse_genomes_project 6 121541102 121541597 - processed_pseudogene processed_pseudogene MGP_AJ_T0080182.1 MGP_AJ_G0031248.1 mouse_genomes_project 6 123419294 123425157 + Mlf2 protein_coding retained_intron MGP_AJ_T0080183.1 MGP_AJ_G0031248.1 mouse_genomes_project 6 123419313 123422304 + Mlf2 protein_coding retained_intron MGP_AJ_T0080184.1 MGP_AJ_G0031248.1 mouse_genomes_project 6 123419313 123420597 + Mlf2 protein_coding retained_intron MGP_AJ_T0080185.1 MGP_AJ_G0031248.1 mouse_genomes_project 6 123419333 123422298 + MGP_AJ_P0080185 Mlf2 protein_coding protein_coding MGP_AJ_T0080186.1 MGP_AJ_G0031248.1 mouse_genomes_project 6 123419340 123424064 + MGP_AJ_P0080186 Mlf2 protein_coding protein_coding MGP_AJ_T0080187.1 MGP_AJ_G0031248.1 mouse_genomes_project 6 123419384 123424063 + MGP_AJ_P0080187 Mlf2 protein_coding protein_coding MGP_AJ_T0080188.1 MGP_AJ_G0031248.1 mouse_genomes_project 6 123419818 123422290 + MGP_AJ_P0080188 Mlf2 protein_coding protein_coding MGP_AJ_T0080189.1 MGP_AJ_G0031248.1 mouse_genomes_project 6 123420532 123423212 + Mlf2 protein_coding retained_intron MGP_AJ_T0010785.1 MGP_AJ_G0008907.1 mouse_genomes_project 6 88717222 88717349 - Gm24816 miRNA miRNA MGP_AJ_T0078238.1 MGP_AJ_G0030863.1 mouse_genomes_project 6 76116110 76119102 - MGP_AJ_P0078238 Reg3d protein_coding protein_coding MGP_AJ_T0078239.1 MGP_AJ_G0030863.1 mouse_genomes_project 6 76116110 76119102 - MGP_AJ_P0078239 Reg3d protein_coding protein_coding MGP_AJ_T0078240.1 MGP_AJ_G0030863.1 mouse_genomes_project 6 76116160 76118750 - MGP_AJ_P0078240 Reg3d protein_coding protein_coding MGP_AJ_T0077648.1 MGP_AJ_G0030717.1 mouse_genomes_project 6 49067028 49070771 - MGP_AJ_P0077648 Hoxa10 protein_coding protein_coding MGP_AJ_T0077649.1 MGP_AJ_G0030717.1 mouse_genomes_project 6 49067030 49069156 - Hoxa10 protein_coding processed_transcript MGP_AJ_T0077650.1 MGP_AJ_G0030717.1 mouse_genomes_project 6 49067753 49076682 - MGP_AJ_P0077650 Hoxa10 protein_coding protein_coding MGP_AJ_T0077651.1 MGP_AJ_G0030717.1 mouse_genomes_project 6 49067913 49076623 - Hoxa10 protein_coding processed_transcript MGP_AJ_T0102024.1 MGP_AJ_G0039830.1 mouse_genomes_project 6 39809592 39842995 + transcribed_unprocessed_pseudogene processed_transcript MGP_AJ_T0102025.1 MGP_AJ_G0039830.1 mouse_genomes_project 6 39838229 39842760 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_AJ_T0079119.1 MGP_AJ_G0031043.1 mouse_genomes_project 6 95268838 95291857 - MGP_AJ_P0079119 Uba3 protein_coding protein_coding MGP_AJ_T0079120.1 MGP_AJ_G0031043.1 mouse_genomes_project 6 95268986 95291856 - MGP_AJ_P0079120 Uba3 protein_coding nonsense_mediated_decay MGP_AJ_T0079121.1 MGP_AJ_G0031043.1 mouse_genomes_project 6 95269175 95291944 - MGP_AJ_P0079121 Uba3 protein_coding protein_coding MGP_AJ_T0079122.1 MGP_AJ_G0031043.1 mouse_genomes_project 6 95280470 95282650 - Uba3 protein_coding retained_intron MGP_AJ_T0079123.1 MGP_AJ_G0031043.1 mouse_genomes_project 6 95289310 95291862 - Uba3 protein_coding retained_intron MGP_AJ_T0079124.1 MGP_AJ_G0031043.1 mouse_genomes_project 6 95290387 95291865 - Uba3 protein_coding retained_intron MGP_AJ_T0079532.1 MGP_AJ_G0031117.1 mouse_genomes_project 6 113447121 113577670 + MGP_AJ_P0079532 Pparg protein_coding protein_coding MGP_AJ_T0079533.1 MGP_AJ_G0031117.1 mouse_genomes_project 6 113448462 113577665 + MGP_AJ_P0079533 Pparg protein_coding protein_coding MGP_AJ_T0079534.1 MGP_AJ_G0031117.1 mouse_genomes_project 6 113448519 113527940 + MGP_AJ_P0079534 Pparg protein_coding protein_coding MGP_AJ_T0079535.1 MGP_AJ_G0031117.1 mouse_genomes_project 6 113448520 113470795 + Pparg protein_coding retained_intron MGP_AJ_T0079536.1 MGP_AJ_G0031117.1 mouse_genomes_project 6 113470670 113549773 + MGP_AJ_P0079536 Pparg protein_coding protein_coding MGP_AJ_T0079537.1 MGP_AJ_G0031117.1 mouse_genomes_project 6 113508704 113577670 + MGP_AJ_P0079537 Pparg protein_coding protein_coding MGP_AJ_T0079538.1 MGP_AJ_G0031117.1 mouse_genomes_project 6 113526355 113550149 + Pparg protein_coding retained_intron MGP_AJ_T0011662.1 MGP_AJ_G0009784.1 mouse_genomes_project 6 97987326 97987648 - Gm24248 misc_RNA misc_RNA MGP_AJ_T0079416.1 MGP_AJ_G0031096.1 mouse_genomes_project 6 111560350 111570382 + MGP_AJ_P0079416 Creld1 protein_coding protein_coding MGP_AJ_T0079417.1 MGP_AJ_G0031096.1 mouse_genomes_project 6 111560476 111566286 + Creld1 protein_coding retained_intron MGP_AJ_T0079418.1 MGP_AJ_G0031096.1 mouse_genomes_project 6 111560908 111565455 + Creld1 protein_coding retained_intron MGP_AJ_T0079419.1 MGP_AJ_G0031096.1 mouse_genomes_project 6 111564540 111566772 + Creld1 protein_coding retained_intron MGP_AJ_T0079420.1 MGP_AJ_G0031096.1 mouse_genomes_project 6 111569060 111570387 + Creld1 protein_coding retained_intron MGP_AJ_T0079421.1 MGP_AJ_G0031096.1 mouse_genomes_project 6 111569062 111570379 + Creld1 protein_coding retained_intron MGP_AJ_T0077340.1 MGP_AJ_G0030643.1 mouse_genomes_project 6 39914344 39915344 + MGP_AJ_P0077340 Olfr237-ps1 protein_coding protein_coding MGP_AJ_T0005103.1 MGP_AJ_G0004354.1 mouse_genomes_project 6 134112939 134164994 + Gm44276 antisense antisense MGP_AJ_T0077205.1 MGP_AJ_G0030587.1 mouse_genomes_project 6 37314907 37325817 - MGP_AJ_P0077205 Clec5a protein_coding protein_coding MGP_AJ_T0077206.1 MGP_AJ_G0030587.1 mouse_genomes_project 6 37316730 37325835 - Clec5a protein_coding processed_transcript MGP_AJ_T0077207.1 MGP_AJ_G0030587.1 mouse_genomes_project 6 37317863 37325809 - MGP_AJ_P0077207 Clec5a protein_coding protein_coding MGP_AJ_T0077208.1 MGP_AJ_G0030587.1 mouse_genomes_project 6 37317973 37325804 - MGP_AJ_P0077208 Clec5a protein_coding protein_coding MGP_AJ_T0101324.1 MGP_AJ_G0039290.1 mouse_genomes_project 6 9797837 9797966 + Gm24985 snoRNA snoRNA MGP_AJ_T0005101.1 MGP_AJ_G0004352.1 mouse_genomes_project 6 133733464 133736568 + 2810454H06Rik antisense antisense MGP_AJ_T0076554.1 MGP_AJ_G0030458.1 mouse_genomes_project 6 19546764 19728319 + MGP_AJ_P0076554 Ptprz1 protein_coding protein_coding MGP_AJ_T0076555.1 MGP_AJ_G0030458.1 mouse_genomes_project 6 19546966 19680334 + MGP_AJ_P0076555 Ptprz1 protein_coding protein_coding MGP_AJ_T0076556.1 MGP_AJ_G0030458.1 mouse_genomes_project 6 19547021 19728020 + MGP_AJ_P0076556 Ptprz1 protein_coding protein_coding MGP_AJ_T0076557.1 MGP_AJ_G0030458.1 mouse_genomes_project 6 19648305 19648740 + Ptprz1 protein_coding retained_intron MGP_AJ_T0076558.1 MGP_AJ_G0030458.1 mouse_genomes_project 6 19662109 19675053 + Ptprz1 protein_coding retained_intron MGP_AJ_T0076559.1 MGP_AJ_G0030458.1 mouse_genomes_project 6 19723697 19726929 + Ptprz1 protein_coding retained_intron MGP_AJ_T0077674.1 MGP_AJ_G0030723.1 mouse_genomes_project 6 49626853 49768105 - Jazf1 protein_coding processed_transcript MGP_AJ_T0077675.1 MGP_AJ_G0030723.1 mouse_genomes_project 6 49626853 49636366 - Jazf1 protein_coding processed_transcript MGP_AJ_T0077676.1 MGP_AJ_G0030723.1 mouse_genomes_project 6 49626853 49927497 - MGP_AJ_P0077676 Jazf1 protein_coding protein_coding MGP_AJ_T0000276.1 MGP_AJ_G0000220.1 mouse_genomes_project 6 65283538 65283998 + IG_V_pseudogene IG_V_pseudogene MGP_AJ_T0008663.1 MGP_AJ_G0007000.1 mouse_genomes_project 6 83896437 83901404 + 4930553P18Rik lincRNA lincRNA MGP_AJ_T0000213.1 MGP_AJ_G0000159.1 mouse_genomes_project 6 68389549 68390161 + MGP_AJ_P0000213 IG_V_gene IG_V_gene MGP_AJ_T0101378.1 MGP_AJ_G0039344.1 mouse_genomes_project 6 121985703 121985835 + Gm25065 snoRNA snoRNA MGP_AJ_T0079673.1 MGP_AJ_G0031146.1 mouse_genomes_project 6 114808890 114830401 - MGP_AJ_P0079673 protein_coding unknown_likely_coding MGP_AJ_T0079674.1 MGP_AJ_G0031146.1 mouse_genomes_project 6 114809113 114830553 - MGP_AJ_P0079674 protein_coding nonsense_mediated_decay MGP_AJ_T0008521.1 MGP_AJ_G0006898.1 mouse_genomes_project 6 10539484 10725858 + lincRNA lincRNA MGP_AJ_T0008522.1 MGP_AJ_G0006898.1 mouse_genomes_project 6 10539527 10571033 + lincRNA lincRNA MGP_AJ_T0078241.1 MGP_AJ_G0030864.1 mouse_genomes_project 6 76120997 76124116 + MGP_AJ_P0078241 Reg3a protein_coding protein_coding MGP_AJ_T0076502.1 MGP_AJ_G0030448.1 mouse_genomes_project 6 14819072 14968381 + MGP_AJ_P0076502 Cftr protein_coding nonsense_mediated_decay MGP_AJ_T0076503.1 MGP_AJ_G0030448.1 mouse_genomes_project 6 14819072 14968382 + MGP_AJ_P0076503 Cftr protein_coding protein_coding MGP_AJ_T0076504.1 MGP_AJ_G0030448.1 mouse_genomes_project 6 14819072 14968381 + MGP_AJ_P0076504 Cftr protein_coding nonsense_mediated_decay MGP_AJ_T0076505.1 MGP_AJ_G0030448.1 mouse_genomes_project 6 14819156 14885342 + MGP_AJ_P0076505 Cftr protein_coding protein_coding MGP_AJ_T0076506.1 MGP_AJ_G0030448.1 mouse_genomes_project 6 14819209 14966647 + MGP_AJ_P0076506 Cftr protein_coding protein_coding MGP_AJ_T0076507.1 MGP_AJ_G0030448.1 mouse_genomes_project 6 14903933 14914028 + Cftr protein_coding retained_intron MGP_AJ_T0076443.1 MGP_AJ_G0030440.1 mouse_genomes_project 6 13709496 13749232 + MGP_AJ_P0076443 Tes protein_coding protein_coding MGP_AJ_T0076444.1 MGP_AJ_G0030440.1 mouse_genomes_project 6 13709507 13713297 + Tes protein_coding retained_intron MGP_AJ_T0076445.1 MGP_AJ_G0030440.1 mouse_genomes_project 6 13709515 13740797 + MGP_AJ_P0076445 Tes protein_coding protein_coding MGP_AJ_T0076446.1 MGP_AJ_G0030440.1 mouse_genomes_project 6 13709539 13732344 + Tes protein_coding processed_transcript MGP_AJ_T0076447.1 MGP_AJ_G0030440.1 mouse_genomes_project 6 13709571 13749237 + MGP_AJ_P0076447 Tes protein_coding protein_coding MGP_AJ_T0002177.1 MGP_AJ_G0002089.1 mouse_genomes_project 6 144917435 144919311 + TEC TEC MGP_AJ_T0077508.1 MGP_AJ_G0030683.1 mouse_genomes_project 6 45556553 45562986 - MGP_AJ_P0077508 Gimap3 protein_coding protein_coding MGP_AJ_T0077509.1 MGP_AJ_G0030683.1 mouse_genomes_project 6 45556555 45559049 - MGP_AJ_P0077509 Gimap3 protein_coding protein_coding MGP_AJ_T0000304.1 MGP_AJ_G0000248.1 mouse_genomes_project 6 67005537 67006104 + IG_V_pseudogene IG_V_pseudogene MGP_AJ_T0080607.1 MGP_AJ_G0031355.1 mouse_genomes_project 6 131118466 131121517 - MGP_AJ_P0080607 Prpmp5 protein_coding protein_coding MGP_AJ_T0015670.1 MGP_AJ_G0013765.1 mouse_genomes_project 6 146033318 146033777 + processed_pseudogene processed_pseudogene MGP_AJ_T0011621.1 MGP_AJ_G0009743.1 mouse_genomes_project 6 5197078 5197390 + Gm24059 misc_RNA misc_RNA MGP_AJ_T0080139.1 MGP_AJ_G0031240.1 mouse_genomes_project 6 123301295 123315761 - MGP_AJ_P0080139 Usp5 protein_coding protein_coding MGP_AJ_T0080140.1 MGP_AJ_G0031240.1 mouse_genomes_project 6 123301314 123315712 - MGP_AJ_P0080140 Usp5 protein_coding protein_coding MGP_AJ_T0080141.1 MGP_AJ_G0031240.1 mouse_genomes_project 6 123301696 123304914 - Usp5 protein_coding retained_intron MGP_AJ_T0080142.1 MGP_AJ_G0031240.1 mouse_genomes_project 6 123303522 123304170 - Usp5 protein_coding retained_intron MGP_AJ_T0080143.1 MGP_AJ_G0031240.1 mouse_genomes_project 6 123308051 123309746 - Usp5 protein_coding retained_intron MGP_AJ_T0080144.1 MGP_AJ_G0031240.1 mouse_genomes_project 6 123308895 123315685 - MGP_AJ_P0080144 Usp5 protein_coding protein_coding MGP_AJ_T0080145.1 MGP_AJ_G0031240.1 mouse_genomes_project 6 123309003 123309900 - Usp5 protein_coding retained_intron MGP_AJ_T0080146.1 MGP_AJ_G0031240.1 mouse_genomes_project 6 123309119 123310477 - Usp5 protein_coding retained_intron MGP_AJ_T0080147.1 MGP_AJ_G0031240.1 mouse_genomes_project 6 123310412 123315172 - MGP_AJ_P0080147 Usp5 protein_coding protein_coding MGP_AJ_T0002085.1 MGP_AJ_G0001998.1 mouse_genomes_project 6 89998438 89999741 - TEC TEC MGP_AJ_T0011659.1 MGP_AJ_G0009781.1 mouse_genomes_project 6 82880297 82880552 + Gm26353 misc_RNA misc_RNA MGP_AJ_T0001913.1 MGP_AJ_G0001826.1 mouse_genomes_project 6 1700042 1700362 + TEC TEC MGP_AJ_T0099071.1 MGP_AJ_G0037044.1 mouse_genomes_project 6 36862922 36873611 + Gm26638 sense_intronic sense_intronic MGP_AJ_T0077105.1 MGP_AJ_G0030564.1 mouse_genomes_project 6 35410207 35593197 - MGP_AJ_P0077105 Hipk2 protein_coding protein_coding MGP_AJ_T0077106.1 MGP_AJ_G0030564.1 mouse_genomes_project 6 35414276 35554338 - MGP_AJ_P0077106 Hipk2 protein_coding protein_coding MGP_AJ_T0077107.1 MGP_AJ_G0030564.1 mouse_genomes_project 6 35414280 35592955 - MGP_AJ_P0077107 Hipk2 protein_coding protein_coding MGP_AJ_T0077108.1 MGP_AJ_G0030564.1 mouse_genomes_project 6 35414285 35593003 - MGP_AJ_P0077108 Hipk2 protein_coding protein_coding MGP_AJ_T0077109.1 MGP_AJ_G0030564.1 mouse_genomes_project 6 35453387 35459944 - Hipk2 protein_coding processed_transcript MGP_AJ_T0077110.1 MGP_AJ_G0030564.1 mouse_genomes_project 6 35462170 35535572 - Hipk2 protein_coding retained_intron MGP_AJ_T0077111.1 MGP_AJ_G0030564.1 mouse_genomes_project 6 35535132 35554425 - Hipk2 protein_coding retained_intron MGP_AJ_T0015242.1 MGP_AJ_G0013337.1 mouse_genomes_project 6 5135931 5137725 - processed_pseudogene processed_pseudogene MGP_AJ_T0079490.1 MGP_AJ_G0031111.1 mouse_genomes_project 6 112728504 112945386 + MGP_AJ_P0079490 Atg7 protein_coding protein_coding MGP_AJ_T0079491.1 MGP_AJ_G0031111.1 mouse_genomes_project 6 112728519 112945384 + MGP_AJ_P0079491 Atg7 protein_coding protein_coding MGP_AJ_T0079492.1 MGP_AJ_G0031111.1 mouse_genomes_project 6 112728523 112771023 + Atg7 protein_coding retained_intron MGP_AJ_T0079493.1 MGP_AJ_G0031111.1 mouse_genomes_project 6 112728525 112764108 + MGP_AJ_P0079493 Atg7 protein_coding protein_coding MGP_AJ_T0079494.1 MGP_AJ_G0031111.1 mouse_genomes_project 6 112728529 112943906 + MGP_AJ_P0079494 Atg7 protein_coding protein_coding MGP_AJ_T0079495.1 MGP_AJ_G0031111.1 mouse_genomes_project 6 112728534 112943997 + MGP_AJ_P0079495 Atg7 protein_coding protein_coding MGP_AJ_T0079496.1 MGP_AJ_G0031111.1 mouse_genomes_project 6 112728534 112759190 + MGP_AJ_P0079496 Atg7 protein_coding protein_coding MGP_AJ_T0079497.1 MGP_AJ_G0031111.1 mouse_genomes_project 6 112728536 112944000 + MGP_AJ_P0079497 Atg7 protein_coding protein_coding MGP_AJ_T0079498.1 MGP_AJ_G0031111.1 mouse_genomes_project 6 112728536 112944006 + MGP_AJ_P0079498 Atg7 protein_coding protein_coding MGP_AJ_T0079499.1 MGP_AJ_G0031111.1 mouse_genomes_project 6 112728538 112772329 + MGP_AJ_P0079499 Atg7 protein_coding protein_coding MGP_AJ_T0079500.1 MGP_AJ_G0031111.1 mouse_genomes_project 6 112734920 112770627 + MGP_AJ_P0079500 Atg7 protein_coding protein_coding MGP_AJ_T0079501.1 MGP_AJ_G0031111.1 mouse_genomes_project 6 112738510 112772312 + MGP_AJ_P0079501 Atg7 protein_coding protein_coding MGP_AJ_T0079502.1 MGP_AJ_G0031111.1 mouse_genomes_project 6 112744138 112759777 + MGP_AJ_P0079502 Atg7 protein_coding protein_coding MGP_AJ_T0079503.1 MGP_AJ_G0031111.1 mouse_genomes_project 6 112766271 112788120 + Atg7 protein_coding processed_transcript MGP_AJ_T0079504.1 MGP_AJ_G0031111.1 mouse_genomes_project 6 112769393 112771601 + Atg7 protein_coding retained_intron MGP_AJ_T0079505.1 MGP_AJ_G0031111.1 mouse_genomes_project 6 112809115 112944000 + Atg7 protein_coding processed_transcript MGP_AJ_T0079506.1 MGP_AJ_G0031111.1 mouse_genomes_project 6 112940926 112943998 + Atg7 protein_coding processed_transcript MGP_AJ_T0015398.1 MGP_AJ_G0013493.1 mouse_genomes_project 6 63475884 63476050 - processed_pseudogene processed_pseudogene MGP_AJ_T0078514.1 MGP_AJ_G0030916.1 mouse_genomes_project 6 82933241 82947259 - protein_coding lincRNA MGP_AJ_T0099074.1 MGP_AJ_G0037047.1 mouse_genomes_project 6 84889195 84889843 + Gm44091 sense_intronic sense_intronic MGP_AJ_T0000151.1 MGP_AJ_G0000115.1 mouse_genomes_project 6 65488425 65488906 + MGP_AJ_P0000151 Igkv14-111 IG_V_gene IG_V_gene MGP_AJ_T0005066.1 MGP_AJ_G0004321.1 mouse_genomes_project 6 113932177 113940021 + antisense antisense MGP_AJ_T0078759.1 MGP_AJ_G0030967.1 mouse_genomes_project 6 85769496 85778190 - MGP_AJ_P0078759 Cnbp protein_coding protein_coding MGP_AJ_T0078760.1 MGP_AJ_G0030967.1 mouse_genomes_project 6 85769496 85778190 - MGP_AJ_P0078760 Cnbp protein_coding protein_coding MGP_AJ_T0078761.1 MGP_AJ_G0030967.1 mouse_genomes_project 6 85769963 85778164 - MGP_AJ_P0078761 Cnbp protein_coding protein_coding MGP_AJ_T0078762.1 MGP_AJ_G0030967.1 mouse_genomes_project 6 85769963 85778114 - MGP_AJ_P0078762 Cnbp protein_coding protein_coding MGP_AJ_T0078763.1 MGP_AJ_G0030967.1 mouse_genomes_project 6 85770768 85778144 - MGP_AJ_P0078763 Cnbp protein_coding protein_coding MGP_AJ_T0078764.1 MGP_AJ_G0030967.1 mouse_genomes_project 6 85770800 85778111 - Cnbp protein_coding retained_intron MGP_AJ_T0078765.1 MGP_AJ_G0030967.1 mouse_genomes_project 6 85770820 85778106 - Cnbp protein_coding retained_intron MGP_AJ_T0078766.1 MGP_AJ_G0030967.1 mouse_genomes_project 6 85770881 85778143 - Cnbp protein_coding retained_intron MGP_AJ_T0078767.1 MGP_AJ_G0030967.1 mouse_genomes_project 6 85772411 85773199 - Cnbp protein_coding retained_intron MGP_AJ_T0081046.1 MGP_AJ_G0031455.1 mouse_genomes_project 6 144404907 144666031 - MGP_AJ_P0081046 Lmntd1 protein_coding nonsense_mediated_decay MGP_AJ_T0081047.1 MGP_AJ_G0031455.1 mouse_genomes_project 6 144437171 144488148 - MGP_AJ_P0081047 Lmntd1 protein_coding protein_coding MGP_AJ_T0081048.1 MGP_AJ_G0031455.1 mouse_genomes_project 6 144484368 144488464 - MGP_AJ_P0081048 Lmntd1 protein_coding protein_coding MGP_AJ_T0081049.1 MGP_AJ_G0031455.1 mouse_genomes_project 6 144594714 144666077 - Lmntd1 protein_coding processed_transcript MGP_AJ_T0081050.1 MGP_AJ_G0031455.1 mouse_genomes_project 6 144632320 144665727 - Lmntd1 protein_coding processed_transcript MGP_AJ_T0015498.1 MGP_AJ_G0013593.1 mouse_genomes_project 6 94130119 94130486 - processed_pseudogene processed_pseudogene MGP_AJ_T0101846.1 MGP_AJ_G0039739.1 mouse_genomes_project 6 62391491 62392561 + transcribed_processed_pseudogene processed_transcript MGP_AJ_T0101847.1 MGP_AJ_G0039739.1 mouse_genomes_project 6 62391611 62392329 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0076986.1 MGP_AJ_G0030538.1 mouse_genomes_project 6 31572142 31602576 - MGP_AJ_P0076986 Wdr91 protein_coding protein_coding MGP_AJ_T0076987.1 MGP_AJ_G0030538.1 mouse_genomes_project 6 31572142 31602576 - MGP_AJ_P0076987 Wdr91 protein_coding nonsense_mediated_decay MGP_AJ_T0076988.1 MGP_AJ_G0030538.1 mouse_genomes_project 6 31596366 31602295 - MGP_AJ_P0076988 Wdr91 protein_coding protein_coding MGP_AJ_T0076989.1 MGP_AJ_G0030538.1 mouse_genomes_project 6 31598362 31602362 - MGP_AJ_P0076989 Wdr91 protein_coding protein_coding MGP_AJ_T0076990.1 MGP_AJ_G0030538.1 mouse_genomes_project 6 31599994 31602263 - MGP_AJ_P0076990 Wdr91 protein_coding protein_coding MGP_AJ_T0076991.1 MGP_AJ_G0030538.1 mouse_genomes_project 6 31600246 31602533 - Wdr91 protein_coding retained_intron MGP_AJ_T0076992.1 MGP_AJ_G0030538.1 mouse_genomes_project 6 31601146 31602536 - Wdr91 protein_coding processed_transcript MGP_AJ_T0076993.1 MGP_AJ_G0030538.1 mouse_genomes_project 6 31601160 31602542 - Wdr91 protein_coding processed_transcript MGP_AJ_T0004933.1 MGP_AJ_G0004235.1 mouse_genomes_project 6 36148331 36149347 + Gm10244 antisense antisense MGP_AJ_T0004934.1 MGP_AJ_G0004235.1 mouse_genomes_project 6 36148822 36149739 + Gm10244 antisense antisense MGP_AJ_T0080683.1 MGP_AJ_G0031387.1 mouse_genomes_project 6 133816795 133821952 + MGP_AJ_P0080683 Apold1 protein_coding protein_coding MGP_AJ_T0098706.1 MGP_AJ_G0036690.1 mouse_genomes_project 6 27010843 27010939 - Gm25625 rRNA rRNA MGP_AJ_T0015579.1 MGP_AJ_G0013674.1 mouse_genomes_project 6 121142264 121143006 - processed_pseudogene processed_pseudogene MGP_AJ_T0080623.1 MGP_AJ_G0031370.1 mouse_genomes_project 6 131651856 131652892 - MGP_AJ_P0080623 Tas2r131 protein_coding protein_coding MGP_AJ_T0002733.1 MGP_AJ_G0002605.1 mouse_genomes_project 6 37975864 37976137 + TR_V_pseudogene TR_V_pseudogene MGP_AJ_T0005071.1 MGP_AJ_G0004326.1 mouse_genomes_project 6 119116378 119151402 + Gm43915 antisense antisense MGP_AJ_T0077830.1 MGP_AJ_G0030762.1 mouse_genomes_project 6 54099914 54100817 + MGP_AJ_P0077830 Vmn1r13 protein_coding protein_coding MGP_AJ_T0077394.1 MGP_AJ_G0030655.1 mouse_genomes_project 6 44549404 44566529 - MGP_AJ_P0077394 Pdia4 protein_coding protein_coding MGP_AJ_T0077395.1 MGP_AJ_G0030655.1 mouse_genomes_project 6 44560127 44566463 - Pdia4 protein_coding processed_transcript MGP_AJ_T0008749.1 MGP_AJ_G0007072.1 mouse_genomes_project 6 127777973 127808647 - 2310001H17Rik lincRNA lincRNA MGP_AJ_T0008750.1 MGP_AJ_G0007072.1 mouse_genomes_project 6 127783450 127804687 - 2310001H17Rik lincRNA lincRNA MGP_AJ_T0008751.1 MGP_AJ_G0007072.1 mouse_genomes_project 6 127787073 127808690 - 2310001H17Rik lincRNA lincRNA MGP_AJ_T0008752.1 MGP_AJ_G0007072.1 mouse_genomes_project 6 127803334 127809424 - 2310001H17Rik lincRNA lincRNA MGP_AJ_T0008753.1 MGP_AJ_G0007072.1 mouse_genomes_project 6 127803394 127809181 - 2310001H17Rik lincRNA lincRNA MGP_AJ_T0008754.1 MGP_AJ_G0007072.1 mouse_genomes_project 6 127803499 127804696 - 2310001H17Rik lincRNA lincRNA MGP_AJ_T0080697.1 MGP_AJ_G0031390.1 mouse_genomes_project 6 133940515 133952590 - MGP_AJ_P0080697 Gprc5d protein_coding protein_coding MGP_AJ_T0080698.1 MGP_AJ_G0031390.1 mouse_genomes_project 6 133940515 133952553 - MGP_AJ_P0080698 Gprc5d protein_coding protein_coding MGP_AJ_T0077583.1 MGP_AJ_G0030700.1 mouse_genomes_project 6 47089329 47180955 - MGP_AJ_P0077583 Osbpl3 protein_coding protein_coding MGP_AJ_T0077584.1 MGP_AJ_G0030700.1 mouse_genomes_project 6 47091182 47096347 - Osbpl3 protein_coding retained_intron MGP_AJ_T0077585.1 MGP_AJ_G0030700.1 mouse_genomes_project 6 47091686 47166820 - MGP_AJ_P0077585 Osbpl3 protein_coding protein_coding MGP_AJ_T0077586.1 MGP_AJ_G0030700.1 mouse_genomes_project 6 47092798 47255344 - MGP_AJ_P0077586 Osbpl3 protein_coding protein_coding MGP_AJ_T0077587.1 MGP_AJ_G0030700.1 mouse_genomes_project 6 47092804 47166923 - MGP_AJ_P0077587 Osbpl3 protein_coding protein_coding MGP_AJ_T0077588.1 MGP_AJ_G0030700.1 mouse_genomes_project 6 47096206 47180955 - Osbpl3 protein_coding retained_intron MGP_AJ_T0077589.1 MGP_AJ_G0030700.1 mouse_genomes_project 6 47123393 47148390 - MGP_AJ_P0077589 Osbpl3 protein_coding protein_coding MGP_AJ_T0077590.1 MGP_AJ_G0030700.1 mouse_genomes_project 6 47144531 47255335 - MGP_AJ_P0077590 Osbpl3 protein_coding protein_coding MGP_AJ_T0077591.1 MGP_AJ_G0030700.1 mouse_genomes_project 6 47149252 47196135 - MGP_AJ_P0077591 Osbpl3 protein_coding protein_coding MGP_AJ_T0077592.1 MGP_AJ_G0030700.1 mouse_genomes_project 6 47210562 47255375 - Osbpl3 protein_coding processed_transcript MGP_AJ_T0015375.1 MGP_AJ_G0013470.1 mouse_genomes_project 6 59692529 59692766 + processed_pseudogene processed_pseudogene MGP_AJ_T0018256.1 MGP_AJ_G0015607.1 mouse_genomes_project 6 49080212 49085610 + Hoxa11os processed_transcript antisense MGP_AJ_T0018257.1 MGP_AJ_G0015607.1 mouse_genomes_project 6 49081062 49085588 + Hoxa11os processed_transcript antisense MGP_AJ_T0018258.1 MGP_AJ_G0015607.1 mouse_genomes_project 6 49081787 49085614 + Hoxa11os processed_transcript antisense MGP_AJ_T0018259.1 MGP_AJ_G0015607.1 mouse_genomes_project 6 49081807 49085609 + Hoxa11os processed_transcript antisense MGP_AJ_T0018260.1 MGP_AJ_G0015607.1 mouse_genomes_project 6 49082039 49085199 + Hoxa11os processed_transcript retained_intron MGP_AJ_T0018261.1 MGP_AJ_G0015607.1 mouse_genomes_project 6 49084240 49085618 + Hoxa11os processed_transcript antisense MGP_AJ_T0102663.1 MGP_AJ_G0040405.1 mouse_genomes_project 6 25089674 25090526 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0080877.1 MGP_AJ_G0031424.1 mouse_genomes_project 6 139572399 139629896 + MGP_AJ_P0080877 Aebp2 protein_coding protein_coding MGP_AJ_T0080878.1 MGP_AJ_G0031424.1 mouse_genomes_project 6 139572405 139604509 + MGP_AJ_P0080878 Aebp2 protein_coding protein_coding MGP_AJ_T0080879.1 MGP_AJ_G0031424.1 mouse_genomes_project 6 139573008 139628787 + MGP_AJ_P0080879 Aebp2 protein_coding protein_coding MGP_AJ_T0080880.1 MGP_AJ_G0031424.1 mouse_genomes_project 6 139573619 139602458 + MGP_AJ_P0080880 Aebp2 protein_coding protein_coding MGP_AJ_T0080881.1 MGP_AJ_G0031424.1 mouse_genomes_project 6 139575646 139603540 + MGP_AJ_P0080881 Aebp2 protein_coding protein_coding MGP_AJ_T0080882.1 MGP_AJ_G0031424.1 mouse_genomes_project 6 139585621 139587052 + Aebp2 protein_coding retained_intron MGP_AJ_T0080883.1 MGP_AJ_G0031424.1 mouse_genomes_project 6 139586635 139605132 + MGP_AJ_P0080883 Aebp2 protein_coding protein_coding MGP_AJ_T0080884.1 MGP_AJ_G0031424.1 mouse_genomes_project 6 139592122 139602744 + Aebp2 protein_coding processed_transcript MGP_AJ_T0080885.1 MGP_AJ_G0031424.1 mouse_genomes_project 6 139597530 139599104 + Aebp2 protein_coding processed_transcript MGP_AJ_T0080740.1 MGP_AJ_G0031399.1 mouse_genomes_project 6 135461861 135510549 - MGP_AJ_P0080740 Plbd1 protein_coding protein_coding MGP_AJ_T0080741.1 MGP_AJ_G0031399.1 mouse_genomes_project 6 135463099 135510494 - Plbd1 protein_coding retained_intron MGP_AJ_T0080742.1 MGP_AJ_G0031399.1 mouse_genomes_project 6 135463672 135482436 - Plbd1 protein_coding retained_intron MGP_AJ_T0080743.1 MGP_AJ_G0031399.1 mouse_genomes_project 6 135488785 135510184 - MGP_AJ_P0080743 Plbd1 protein_coding protein_coding MGP_AJ_T0077554.1 MGP_AJ_G0030694.1 mouse_genomes_project 6 46121510 46145380 + MGP_AJ_P0077554 Ccdc126 protein_coding protein_coding MGP_AJ_T0077555.1 MGP_AJ_G0030694.1 mouse_genomes_project 6 46121543 46145376 + MGP_AJ_P0077555 Ccdc126 protein_coding protein_coding MGP_AJ_T0079328.1 MGP_AJ_G0031082.1 mouse_genomes_project 6 111242295 111269843 - MGP_AJ_P0079328 Lhfpl4 protein_coding protein_coding MGP_AJ_T0015617.1 MGP_AJ_G0013712.1 mouse_genomes_project 6 129001295 129001637 - processed_pseudogene processed_pseudogene MGP_AJ_T0080330.1 MGP_AJ_G0031271.1 mouse_genomes_project 6 124185398 124461408 + Ano2 protein_coding retained_intron MGP_AJ_T0080331.1 MGP_AJ_G0031271.1 mouse_genomes_project 6 124185398 124541811 + MGP_AJ_P0080331 Ano2 protein_coding protein_coding MGP_AJ_T0080332.1 MGP_AJ_G0031271.1 mouse_genomes_project 6 124206207 124541811 + MGP_AJ_P0080332 Ano2 protein_coding nonsense_mediated_decay MGP_AJ_T0080333.1 MGP_AJ_G0031271.1 mouse_genomes_project 6 124207057 124292184 + Ano2 protein_coding processed_transcript MGP_AJ_T0080334.1 MGP_AJ_G0031271.1 mouse_genomes_project 6 124207171 124541199 + MGP_AJ_P0080334 Ano2 protein_coding unknown_likely_coding MGP_AJ_T0080335.1 MGP_AJ_G0031271.1 mouse_genomes_project 6 124314307 124404535 + Ano2 protein_coding processed_transcript MGP_AJ_T0080336.1 MGP_AJ_G0031271.1 mouse_genomes_project 6 124314308 124541809 + MGP_AJ_P0080336 Ano2 protein_coding nonsense_mediated_decay MGP_AJ_T0015679.1 MGP_AJ_G0013774.1 mouse_genomes_project 6 148358878 148359323 - processed_pseudogene processed_pseudogene MGP_AJ_T0015466.1 MGP_AJ_G0013561.1 mouse_genomes_project 6 82914404 82914948 + processed_pseudogene processed_pseudogene MGP_AJ_T0080899.1 MGP_AJ_G0031429.1 mouse_genomes_project 6 140686698 140773414 - MGP_AJ_P0080899 Gm5724 protein_coding protein_coding MGP_AJ_T0079398.1 MGP_AJ_G0031092.1 mouse_genomes_project 6 111501804 111511892 - MGP_AJ_P0079398 Cidec protein_coding protein_coding MGP_AJ_T0079399.1 MGP_AJ_G0031092.1 mouse_genomes_project 6 111505668 111511771 - MGP_AJ_P0079399 Cidec protein_coding protein_coding MGP_AJ_T0077225.1 MGP_AJ_G0030596.1 mouse_genomes_project 6 37784112 37789354 - MGP_AJ_P0077225 2210010C04Rik protein_coding protein_coding MGP_AJ_T0015403.1 MGP_AJ_G0013498.1 mouse_genomes_project 6 63820038 63820495 + processed_pseudogene processed_pseudogene MGP_AJ_T0080609.1 MGP_AJ_G0031357.1 mouse_genomes_project 6 131328624 131330953 - A630073D07Rik protein_coding processed_transcript MGP_AJ_T0080610.1 MGP_AJ_G0031357.1 mouse_genomes_project 6 131328624 131331005 - MGP_AJ_P0080610 A630073D07Rik protein_coding protein_coding MGP_AJ_T0077534.1 MGP_AJ_G0030690.1 mouse_genomes_project 6 45828573 45830405 + Gpnmb protein_coding retained_intron MGP_AJ_T0077535.1 MGP_AJ_G0030690.1 mouse_genomes_project 6 45828642 45850514 + MGP_AJ_P0077535 Gpnmb protein_coding protein_coding MGP_AJ_T0077536.1 MGP_AJ_G0030690.1 mouse_genomes_project 6 45828692 45835039 + MGP_AJ_P0077536 Gpnmb protein_coding nonsense_mediated_decay MGP_AJ_T0077537.1 MGP_AJ_G0030690.1 mouse_genomes_project 6 45828704 45863572 + MGP_AJ_P0077537 Gpnmb protein_coding protein_coding MGP_AJ_T0077538.1 MGP_AJ_G0030690.1 mouse_genomes_project 6 45839716 45840644 + Gpnmb protein_coding retained_intron MGP_AJ_T0001943.1 MGP_AJ_G0001856.1 mouse_genomes_project 6 27790021 27792115 - TEC TEC MGP_AJ_T0015590.1 MGP_AJ_G0013685.1 mouse_genomes_project 6 123694238 123694599 - processed_pseudogene processed_pseudogene MGP_AJ_T0079453.1 MGP_AJ_G0031104.1 mouse_genomes_project 6 111777249 111791264 + MGP_AJ_P0079453 Tatdn2 protein_coding protein_coding MGP_AJ_T0079454.1 MGP_AJ_G0031104.1 mouse_genomes_project 6 111777763 111791144 + MGP_AJ_P0079454 Tatdn2 protein_coding protein_coding MGP_AJ_T0079455.1 MGP_AJ_G0031104.1 mouse_genomes_project 6 111777872 111790400 + MGP_AJ_P0079455 Tatdn2 protein_coding protein_coding MGP_AJ_T0079456.1 MGP_AJ_G0031104.1 mouse_genomes_project 6 111785016 111791261 + MGP_AJ_P0079456 Tatdn2 protein_coding protein_coding MGP_AJ_T0079457.1 MGP_AJ_G0031104.1 mouse_genomes_project 6 111787470 111790644 + MGP_AJ_P0079457 Tatdn2 protein_coding protein_coding MGP_AJ_T0079339.1 MGP_AJ_G0031084.1 mouse_genomes_project 6 111354459 111377605 + Cpne9 protein_coding retained_intron MGP_AJ_T0079340.1 MGP_AJ_G0031084.1 mouse_genomes_project 6 111354459 111377547 + MGP_AJ_P0079340 Cpne9 protein_coding protein_coding MGP_AJ_T0079341.1 MGP_AJ_G0031084.1 mouse_genomes_project 6 111354462 111376802 + MGP_AJ_P0079341 Cpne9 protein_coding nonsense_mediated_decay MGP_AJ_T0079342.1 MGP_AJ_G0031084.1 mouse_genomes_project 6 111354487 111355582 + Cpne9 protein_coding retained_intron MGP_AJ_T0079343.1 MGP_AJ_G0031084.1 mouse_genomes_project 6 111354488 111357421 + Cpne9 protein_coding retained_intron MGP_AJ_T0079344.1 MGP_AJ_G0031084.1 mouse_genomes_project 6 111354491 111355660 + Cpne9 protein_coding retained_intron MGP_AJ_T0079345.1 MGP_AJ_G0031084.1 mouse_genomes_project 6 111354516 111356122 + Cpne9 protein_coding processed_transcript MGP_AJ_T0079346.1 MGP_AJ_G0031084.1 mouse_genomes_project 6 111354517 111356577 + Cpne9 protein_coding processed_transcript MGP_AJ_T0079347.1 MGP_AJ_G0031084.1 mouse_genomes_project 6 111354626 111376599 + MGP_AJ_P0079347 Cpne9 protein_coding unknown_likely_coding MGP_AJ_T0079348.1 MGP_AJ_G0031084.1 mouse_genomes_project 6 111360626 111377549 + Cpne9 protein_coding retained_intron MGP_AJ_T0079349.1 MGP_AJ_G0031084.1 mouse_genomes_project 6 111366445 111373657 + Cpne9 protein_coding processed_transcript MGP_AJ_T0076228.1 MGP_AJ_G0030399.1 mouse_genomes_project 6 794539 804664 - MGP_AJ_P0076228 Bet1 protein_coding protein_coding MGP_AJ_T0076229.1 MGP_AJ_G0030399.1 mouse_genomes_project 6 795359 804611 - Bet1 protein_coding processed_transcript MGP_AJ_T0076230.1 MGP_AJ_G0030399.1 mouse_genomes_project 6 795513 797788 - Bet1 protein_coding retained_intron MGP_AJ_T0076231.1 MGP_AJ_G0030399.1 mouse_genomes_project 6 798014 804664 - Bet1 protein_coding retained_intron MGP_AJ_T0076232.1 MGP_AJ_G0030399.1 mouse_genomes_project 6 799191 804622 - Bet1 protein_coding processed_transcript MGP_AJ_T0076233.1 MGP_AJ_G0030399.1 mouse_genomes_project 6 799214 804622 - Bet1 protein_coding processed_transcript MGP_AJ_T0008649.1 MGP_AJ_G0006991.1 mouse_genomes_project 6 79443072 79480579 - Gm43902 lincRNA lincRNA MGP_AJ_T0015445.1 MGP_AJ_G0013540.1 mouse_genomes_project 6 73440989 73441388 - processed_pseudogene processed_pseudogene MGP_AJ_T0002119.1 MGP_AJ_G0002032.1 mouse_genomes_project 6 111493644 111496755 + TEC TEC MGP_AJ_T0002562.1 MGP_AJ_G0002463.1 mouse_genomes_project 6 38296359 38296410 + MGP_AJ_P0002562 Trbj1-4 TR_J_gene TR_J_gene MGP_AJ_T0005050.1 MGP_AJ_G0004310.1 mouse_genomes_project 6 106645890 106733397 - 0610040F04Rik antisense antisense MGP_AJ_T0005051.1 MGP_AJ_G0004310.1 mouse_genomes_project 6 106679414 106683074 - 0610040F04Rik antisense antisense MGP_AJ_T0010743.1 MGP_AJ_G0008865.1 mouse_genomes_project 6 15102537 15102607 - Gm26233 miRNA miRNA MGP_AJ_T0080755.1 MGP_AJ_G0031403.1 mouse_genomes_project 6 135679912 135732359 + MGP_AJ_P0080755 BC049715 protein_coding protein_coding MGP_AJ_T0080756.1 MGP_AJ_G0031403.1 mouse_genomes_project 6 135680767 135733097 + MGP_AJ_P0080756 BC049715 protein_coding protein_coding MGP_AJ_T0080757.1 MGP_AJ_G0031403.1 mouse_genomes_project 6 135685441 135733223 + MGP_AJ_P0080757 BC049715 protein_coding protein_coding MGP_AJ_T0080758.1 MGP_AJ_G0031403.1 mouse_genomes_project 6 135732324 135733068 + MGP_AJ_P0080758 BC049715 protein_coding protein_coding MGP_AJ_T0100104.1 MGP_AJ_G0038070.1 mouse_genomes_project 6 95662563 95662726 - Gm23510 snRNA snRNA MGP_AJ_T0077402.1 MGP_AJ_G0030658.1 mouse_genomes_project 6 44624775 44656154 + MGP_AJ_P0077402 Zfp282 protein_coding protein_coding MGP_AJ_T0077403.1 MGP_AJ_G0030658.1 mouse_genomes_project 6 44625227 44640451 + Zfp282 protein_coding retained_intron MGP_AJ_T0080957.1 MGP_AJ_G0031444.1 mouse_genomes_project 6 141767362 141786373 + MGP_AJ_P0080957 Cmas protein_coding protein_coding MGP_AJ_T0080958.1 MGP_AJ_G0031444.1 mouse_genomes_project 6 141767430 141781249 + MGP_AJ_P0080958 Cmas protein_coding nonsense_mediated_decay MGP_AJ_T0080959.1 MGP_AJ_G0031444.1 mouse_genomes_project 6 141767440 141785323 + MGP_AJ_P0080959 Cmas protein_coding nonsense_mediated_decay MGP_AJ_T0080960.1 MGP_AJ_G0031444.1 mouse_genomes_project 6 141767451 141782879 + MGP_AJ_P0080960 Cmas protein_coding nonsense_mediated_decay MGP_AJ_T0080961.1 MGP_AJ_G0031444.1 mouse_genomes_project 6 141780624 141781993 + Cmas protein_coding retained_intron MGP_AJ_T0000311.1 MGP_AJ_G0000255.1 mouse_genomes_project 6 67484862 67485144 - IG_V_pseudogene IG_V_pseudogene MGP_AJ_T0077921.1 MGP_AJ_G0030794.1 mouse_genomes_project 6 60296037 60353576 + Grid2 protein_coding processed_transcript MGP_AJ_T0077922.1 MGP_AJ_G0030794.1 mouse_genomes_project 6 60296167 61227614 + Grid2 protein_coding processed_transcript MGP_AJ_T0077923.1 MGP_AJ_G0030794.1 mouse_genomes_project 6 60296188 61752073 + MGP_AJ_P0077923 Grid2 protein_coding protein_coding MGP_AJ_T0077924.1 MGP_AJ_G0030794.1 mouse_genomes_project 6 60296356 60545412 + Grid2 protein_coding retained_intron MGP_AJ_T0077925.1 MGP_AJ_G0030794.1 mouse_genomes_project 6 60296987 61337055 + Grid2 protein_coding retained_intron MGP_AJ_T0077926.1 MGP_AJ_G0030794.1 mouse_genomes_project 6 61123260 61141656 + Grid2 protein_coding retained_intron MGP_AJ_T0000167.1 MGP_AJ_G0000126.1 mouse_genomes_project 6 66062587 66063143 - MGP_AJ_P0000167 Igkv4-92 IG_V_gene IG_V_gene MGP_AJ_T0002014.1 MGP_AJ_G0001927.1 mouse_genomes_project 6 70480307 70483109 - TEC TEC MGP_AJ_T0077556.1 MGP_AJ_G0030695.1 mouse_genomes_project 6 46173407 46180445 + MGP_AJ_P0077556 Fam221a protein_coding protein_coding MGP_AJ_T0077557.1 MGP_AJ_G0030695.1 mouse_genomes_project 6 46173420 46197104 + MGP_AJ_P0077557 Fam221a protein_coding protein_coding MGP_AJ_T0077558.1 MGP_AJ_G0030695.1 mouse_genomes_project 6 46183999 46190596 + Fam221a protein_coding processed_transcript MGP_AJ_T0077559.1 MGP_AJ_G0030695.1 mouse_genomes_project 6 46190392 46197492 + Fam221a protein_coding retained_intron MGP_AJ_T0077560.1 MGP_AJ_G0030695.1 mouse_genomes_project 6 46195693 46197437 + Fam221a protein_coding retained_intron MGP_AJ_T0001930.1 MGP_AJ_G0001843.1 mouse_genomes_project 6 18358017 18362096 + TEC TEC MGP_AJ_T0002182.1 MGP_AJ_G0002094.1 mouse_genomes_project 6 146544482 146548369 - TEC TEC MGP_AJ_T0101355.1 MGP_AJ_G0039321.1 mouse_genomes_project 6 68558994 68559130 + Gm23346 snoRNA snoRNA MGP_AJ_T0077627.1 MGP_AJ_G0030708.1 mouse_genomes_project 6 48991101 48993832 - MGP_AJ_P0077627 Hoxa1 protein_coding protein_coding MGP_AJ_T0077628.1 MGP_AJ_G0030708.1 mouse_genomes_project 6 48991106 48993832 - MGP_AJ_P0077628 Hoxa1 protein_coding protein_coding MGP_AJ_T0008591.1 MGP_AJ_G0006943.1 mouse_genomes_project 6 45324130 45325032 - 1700026J14Rik lincRNA lincRNA MGP_AJ_T0011666.1 MGP_AJ_G0009788.1 mouse_genomes_project 6 110071797 110072111 + Gm25454 misc_RNA misc_RNA MGP_AJ_T0102043.1 MGP_AJ_G0039836.1 mouse_genomes_project 6 120047000 120511316 + transcribed_unprocessed_pseudogene processed_transcript MGP_AJ_T0102044.1 MGP_AJ_G0039836.1 mouse_genomes_project 6 120047104 120512341 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_AJ_T0004965.1 MGP_AJ_G0004258.1 mouse_genomes_project 6 56065473 56101896 + BB365896 antisense antisense MGP_AJ_T0005092.1 MGP_AJ_G0004345.1 mouse_genomes_project 6 126983935 127020877 + Gm10069 antisense antisense MGP_AJ_T0005093.1 MGP_AJ_G0004345.1 mouse_genomes_project 6 126984517 127048540 + Gm10069 antisense antisense MGP_AJ_T0005094.1 MGP_AJ_G0004345.1 mouse_genomes_project 6 127018845 127033989 + Gm10069 antisense antisense MGP_AJ_T0005120.1 MGP_AJ_G0004368.1 mouse_genomes_project 6 144079607 144082484 + Gm26666 antisense antisense MGP_AJ_T0008721.1 MGP_AJ_G0007046.1 mouse_genomes_project 6 115656375 115668998 + Gm9946 lincRNA lincRNA MGP_AJ_T0008722.1 MGP_AJ_G0007046.1 mouse_genomes_project 6 115656375 115664866 + Gm9946 lincRNA lincRNA MGP_AJ_T0008723.1 MGP_AJ_G0007046.1 mouse_genomes_project 6 115664344 115664728 + Gm9946 lincRNA lincRNA MGP_AJ_T0000283.1 MGP_AJ_G0000227.1 mouse_genomes_project 6 65619649 65619951 + IG_V_pseudogene IG_V_pseudogene MGP_AJ_T0015673.1 MGP_AJ_G0013768.1 mouse_genomes_project 6 147250198 147250601 + processed_pseudogene processed_pseudogene MGP_AJ_T0077337.1 MGP_AJ_G0030641.1 mouse_genomes_project 6 39691881 39692931 + MGP_AJ_P0077337 Olfr444 protein_coding protein_coding MGP_AJ_T0015557.1 MGP_AJ_G0013652.1 mouse_genomes_project 6 115313521 115313898 - processed_pseudogene processed_pseudogene MGP_AJ_T0005086.1 MGP_AJ_G0004340.1 mouse_genomes_project 6 125671711 125735577 + 9330179D12Rik antisense antisense MGP_AJ_T0005087.1 MGP_AJ_G0004340.1 mouse_genomes_project 6 125671948 125735869 + 9330179D12Rik antisense antisense MGP_AJ_T0015638.1 MGP_AJ_G0013733.1 mouse_genomes_project 6 131439148 131439419 + processed_pseudogene processed_pseudogene MGP_AJ_T0100093.1 MGP_AJ_G0038059.1 mouse_genomes_project 6 63064608 63064708 - Gm23625 snRNA snRNA MGP_AJ_T0076565.1 MGP_AJ_G0030461.1 mouse_genomes_project 6 19954246 20486051 - MGP_AJ_P0076565 Cadps2 protein_coding protein_coding MGP_AJ_T0076566.1 MGP_AJ_G0030461.1 mouse_genomes_project 6 19954246 20486266 - MGP_AJ_P0076566 Cadps2 protein_coding protein_coding MGP_AJ_T0076567.1 MGP_AJ_G0030461.1 mouse_genomes_project 6 19954246 20486267 - MGP_AJ_P0076567 Cadps2 protein_coding protein_coding MGP_AJ_T0076568.1 MGP_AJ_G0030461.1 mouse_genomes_project 6 19954296 20486071 - MGP_AJ_P0076568 Cadps2 protein_coding protein_coding MGP_AJ_T0076569.1 MGP_AJ_G0030461.1 mouse_genomes_project 6 19954311 20485983 - MGP_AJ_P0076569 Cadps2 protein_coding protein_coding MGP_AJ_T0076570.1 MGP_AJ_G0030461.1 mouse_genomes_project 6 19954312 20486070 - MGP_AJ_P0076570 Cadps2 protein_coding protein_coding MGP_AJ_T0076571.1 MGP_AJ_G0030461.1 mouse_genomes_project 6 19954316 20046914 - Cadps2 protein_coding processed_transcript MGP_AJ_T0076572.1 MGP_AJ_G0030461.1 mouse_genomes_project 6 19954981 20485989 - MGP_AJ_P0076572 Cadps2 protein_coding protein_coding MGP_AJ_T0076573.1 MGP_AJ_G0030461.1 mouse_genomes_project 6 19954981 20244165 - MGP_AJ_P0076573 Cadps2 protein_coding protein_coding MGP_AJ_T0076574.1 MGP_AJ_G0030461.1 mouse_genomes_project 6 19954986 20005601 - Cadps2 protein_coding processed_transcript MGP_AJ_T0076575.1 MGP_AJ_G0030461.1 mouse_genomes_project 6 20092387 20486109 - MGP_AJ_P0076575 Cadps2 protein_coding protein_coding MGP_AJ_T0076576.1 MGP_AJ_G0030461.1 mouse_genomes_project 6 20238448 20486146 - Cadps2 protein_coding retained_intron MGP_AJ_T0076580.1 MGP_AJ_G0030461.1 mouse_genomes_project 6 20335187 20486108 - Cadps2 protein_coding retained_intron MGP_AJ_T0078233.1 MGP_AJ_G0030861.1 mouse_genomes_project 6 75960054 75962001 + MGP_AJ_P0078233 protein_coding protein_coding MGP_AJ_T0080315.1 MGP_AJ_G0031268.1 mouse_genomes_project 6 123851416 123870091 - MGP_AJ_P0080315 Plekhg6 protein_coding protein_coding MGP_AJ_T0078339.1 MGP_AJ_G0030887.1 mouse_genomes_project 6 80892971 80901097 + MGP_AJ_P0078339 Gm42688 protein_coding nonsense_mediated_decay MGP_AJ_T0077157.1 MGP_AJ_G0030573.1 mouse_genomes_project 6 36317272 36328894 + MGP_AJ_P0077157 protein_coding nonsense_mediated_decay MGP_AJ_T0078326.1 MGP_AJ_G0030883.1 mouse_genomes_project 6 80859251 80861153 - MGP_AJ_P0078326 Tlx2 protein_coding protein_coding MGP_AJ_T0078327.1 MGP_AJ_G0030883.1 mouse_genomes_project 6 80859518 80861221 - MGP_AJ_P0078327 Tlx2 protein_coding protein_coding MGP_AJ_T0077629.1 MGP_AJ_G0030709.1 mouse_genomes_project 6 48997934 49000349 - MGP_AJ_P0077629 Hoxa2 protein_coding protein_coding MGP_AJ_T0015559.1 MGP_AJ_G0013654.1 mouse_genomes_project 6 115914703 115915204 + processed_pseudogene processed_pseudogene MGP_AJ_T0078942.1 MGP_AJ_G0031007.1 mouse_genomes_project 6 88518415 88594972 + Aldh1l1 protein_coding processed_transcript MGP_AJ_T0078943.1 MGP_AJ_G0031007.1 mouse_genomes_project 6 88586368 88636231 + MGP_AJ_P0078943 Aldh1l1 protein_coding protein_coding MGP_AJ_T0078944.1 MGP_AJ_G0031007.1 mouse_genomes_project 6 88586384 88635197 + MGP_AJ_P0078944 Aldh1l1 protein_coding protein_coding MGP_AJ_T0078945.1 MGP_AJ_G0031007.1 mouse_genomes_project 6 88586422 88595547 + MGP_AJ_P0078945 Aldh1l1 protein_coding protein_coding MGP_AJ_T0078946.1 MGP_AJ_G0031007.1 mouse_genomes_project 6 88586427 88635188 + MGP_AJ_P0078946 Aldh1l1 protein_coding nonsense_mediated_decay MGP_AJ_T0078947.1 MGP_AJ_G0031007.1 mouse_genomes_project 6 88603294 88606473 + Aldh1l1 protein_coding processed_transcript MGP_AJ_T0078948.1 MGP_AJ_G0031007.1 mouse_genomes_project 6 88625320 88633103 + Aldh1l1 protein_coding retained_intron MGP_AJ_T0015619.1 MGP_AJ_G0013714.1 mouse_genomes_project 6 129001304 129001642 - processed_pseudogene processed_pseudogene MGP_AJ_T0010815.1 MGP_AJ_G0008937.1 mouse_genomes_project 6 127548079 127548135 - Mir7649 miRNA miRNA MGP_AJ_T0002052.1 MGP_AJ_G0001965.1 mouse_genomes_project 6 84872125 84873921 + TEC TEC MGP_AJ_T0004929.1 MGP_AJ_G0004231.1 mouse_genomes_project 6 33621199 33670995 + 1700111E14Rik antisense antisense MGP_AJ_T0005026.1 MGP_AJ_G0004295.1 mouse_genomes_project 6 86656854 86666280 - Gm26588 antisense antisense MGP_AJ_T0005027.1 MGP_AJ_G0004295.1 mouse_genomes_project 6 86659674 86664946 - Gm26588 antisense antisense MGP_AJ_T0001944.1 MGP_AJ_G0001857.1 mouse_genomes_project 6 27825907 27828199 - TEC TEC MGP_AJ_T0076591.1 MGP_AJ_G0030468.1 mouse_genomes_project 6 21170443 21212922 + MGP_AJ_P0076591 Asb15 protein_coding protein_coding MGP_AJ_T0076592.1 MGP_AJ_G0030468.1 mouse_genomes_project 6 21198009 21215102 + MGP_AJ_P0076592 Asb15 protein_coding protein_coding MGP_AJ_T0005043.1 MGP_AJ_G0004306.1 mouse_genomes_project 6 99164473 99300539 + Gm43948 antisense antisense MGP_AJ_T0008631.1 MGP_AJ_G0006974.1 mouse_genomes_project 6 63529875 63537658 - lincRNA lincRNA MGP_AJ_T0008632.1 MGP_AJ_G0006974.1 mouse_genomes_project 6 63532120 63537697 - lincRNA lincRNA MGP_AJ_T0008699.1 MGP_AJ_G0007026.1 mouse_genomes_project 6 98060754 98084744 - Gm44290 lincRNA lincRNA MGP_AJ_T0079105.1 MGP_AJ_G0031039.1 mouse_genomes_project 6 94264530 94266356 - MGP_AJ_P0079105 1700123L14Rik protein_coding protein_coding MGP_AJ_T0078786.1 MGP_AJ_G0030971.1 mouse_genomes_project 6 85927699 85975698 - MGP_AJ_P0078786 Rab7 protein_coding protein_coding MGP_AJ_T0078787.1 MGP_AJ_G0030971.1 mouse_genomes_project 6 85933837 85975684 - MGP_AJ_P0078787 Rab7 protein_coding protein_coding MGP_AJ_T0078788.1 MGP_AJ_G0030971.1 mouse_genomes_project 6 85933895 85975651 - MGP_AJ_P0078788 Rab7 protein_coding protein_coding MGP_AJ_T0004962.1 MGP_AJ_G0004255.1 mouse_genomes_project 6 51546904 51547892 - Gm28402 antisense antisense MGP_AJ_T0002164.1 MGP_AJ_G0002076.1 mouse_genomes_project 6 136540578 136542174 - TEC TEC MGP_AJ_T0102703.1 MGP_AJ_G0040445.1 mouse_genomes_project 6 87689378 87690177 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0080508.1 MGP_AJ_G0031315.1 mouse_genomes_project 6 127914576 127932477 + MGP_AJ_P0080508 Clec12a protein_coding protein_coding MGP_AJ_T0080509.1 MGP_AJ_G0031315.1 mouse_genomes_project 6 127921787 127926598 + Clec12a protein_coding retained_intron MGP_AJ_T0080510.1 MGP_AJ_G0031315.1 mouse_genomes_project 6 127922009 127938600 + MGP_AJ_P0080510 Clec12a protein_coding protein_coding MGP_AJ_T0080511.1 MGP_AJ_G0031315.1 mouse_genomes_project 6 127929775 127937713 + Clec12a protein_coding retained_intron MGP_AJ_T0100109.1 MGP_AJ_G0038075.1 mouse_genomes_project 6 105062839 105062937 + Gm22418 snRNA snRNA MGP_AJ_T0002020.1 MGP_AJ_G0001933.1 mouse_genomes_project 6 75135503 75139622 - TEC TEC MGP_AJ_T0001934.1 MGP_AJ_G0001847.1 mouse_genomes_project 6 24828758 24832556 - TEC TEC MGP_AJ_T0002186.1 MGP_AJ_G0002098.1 mouse_genomes_project 6 147821484 147823145 + TEC TEC MGP_AJ_T0098850.1 MGP_AJ_G0036834.1 mouse_genomes_project 6 49869492 49869631 - Gm26215 scaRNA scaRNA MGP_AJ_T0077449.1 MGP_AJ_G0030667.1 mouse_genomes_project 6 45343742 45360366 + MGP_AJ_P0077449 Lrrc61 protein_coding protein_coding MGP_AJ_T0077450.1 MGP_AJ_G0030667.1 mouse_genomes_project 6 45343745 45358030 + MGP_AJ_P0077450 Lrrc61 protein_coding protein_coding MGP_AJ_T0077451.1 MGP_AJ_G0030667.1 mouse_genomes_project 6 45343745 45358010 + MGP_AJ_P0077451 Lrrc61 protein_coding protein_coding MGP_AJ_T0077452.1 MGP_AJ_G0030667.1 mouse_genomes_project 6 45343751 45360365 + MGP_AJ_P0077452 Lrrc61 protein_coding protein_coding MGP_AJ_T0077453.1 MGP_AJ_G0030667.1 mouse_genomes_project 6 45343757 45357905 + Lrrc61 protein_coding processed_transcript MGP_AJ_T0077454.1 MGP_AJ_G0030667.1 mouse_genomes_project 6 45343775 45358213 + MGP_AJ_P0077454 Lrrc61 protein_coding protein_coding MGP_AJ_T0015587.1 MGP_AJ_G0013682.1 mouse_genomes_project 6 122689013 122689365 + processed_pseudogene processed_pseudogene MGP_AJ_T0008638.1 MGP_AJ_G0006980.1 mouse_genomes_project 6 69042225 69050332 - lincRNA lincRNA MGP_AJ_T0077968.1 MGP_AJ_G0030804.1 mouse_genomes_project 6 63629244 63636888 - MGP_AJ_P0077968 Vmn1r32 protein_coding protein_coding MGP_AJ_T0015540.1 MGP_AJ_G0013635.1 mouse_genomes_project 6 111428135 111432315 - processed_pseudogene processed_pseudogene MGP_AJ_T0077003.1 MGP_AJ_G0030541.1 mouse_genomes_project 6 31713499 31716299 - Cnot4 protein_coding retained_intron MGP_AJ_T0077004.1 MGP_AJ_G0030541.1 mouse_genomes_project 6 31713499 31825040 - MGP_AJ_P0077004 Cnot4 protein_coding protein_coding MGP_AJ_T0077005.1 MGP_AJ_G0030541.1 mouse_genomes_project 6 31713500 31825109 - MGP_AJ_P0077005 Cnot4 protein_coding protein_coding MGP_AJ_T0077006.1 MGP_AJ_G0030541.1 mouse_genomes_project 6 31713505 31825104 - MGP_AJ_P0077006 Cnot4 protein_coding protein_coding MGP_AJ_T0077007.1 MGP_AJ_G0030541.1 mouse_genomes_project 6 31736398 31825130 - MGP_AJ_P0077007 Cnot4 protein_coding protein_coding MGP_AJ_T0077008.1 MGP_AJ_G0030541.1 mouse_genomes_project 6 31737701 31777194 - MGP_AJ_P0077008 Cnot4 protein_coding unknown_likely_coding MGP_AJ_T0077009.1 MGP_AJ_G0030541.1 mouse_genomes_project 6 31743912 31747853 - Cnot4 protein_coding retained_intron MGP_AJ_T0077010.1 MGP_AJ_G0030541.1 mouse_genomes_project 6 31744343 31825102 - Cnot4 protein_coding processed_transcript MGP_AJ_T0015281.1 MGP_AJ_G0013376.1 mouse_genomes_project 6 21468336 21469166 + processed_pseudogene processed_pseudogene MGP_AJ_T0101371.1 MGP_AJ_G0039337.1 mouse_genomes_project 6 113817843 113817981 - Gm24008 snoRNA snoRNA MGP_AJ_T0015236.1 MGP_AJ_G0013331.1 mouse_genomes_project 6 3962820 3963445 - processed_pseudogene processed_pseudogene MGP_AJ_T0015461.1 MGP_AJ_G0013556.1 mouse_genomes_project 6 81650404 81651170 - processed_pseudogene processed_pseudogene MGP_AJ_T0079045.1 MGP_AJ_G0031025.1 mouse_genomes_project 6 90234395 90248708 - MGP_AJ_P0079045 Mrps25 protein_coding protein_coding MGP_AJ_T0079046.1 MGP_AJ_G0031025.1 mouse_genomes_project 6 90239453 90240518 - Mrps25 protein_coding retained_intron MGP_AJ_T0079047.1 MGP_AJ_G0031025.1 mouse_genomes_project 6 90242989 90248646 - Mrps25 protein_coding retained_intron MGP_AJ_T0079411.1 MGP_AJ_G0031095.1 mouse_genomes_project 6 111548476 111560194 + MGP_AJ_P0079411 Il17rc protein_coding protein_coding MGP_AJ_T0079412.1 MGP_AJ_G0031095.1 mouse_genomes_project 6 111549332 111553492 + MGP_AJ_P0079412 Il17rc protein_coding protein_coding MGP_AJ_T0079413.1 MGP_AJ_G0031095.1 mouse_genomes_project 6 111549843 111560194 + MGP_AJ_P0079413 Il17rc protein_coding protein_coding MGP_AJ_T0079414.1 MGP_AJ_G0031095.1 mouse_genomes_project 6 111551308 111553798 + MGP_AJ_P0079414 Il17rc protein_coding protein_coding MGP_AJ_T0079415.1 MGP_AJ_G0031095.1 mouse_genomes_project 6 111553641 111556355 + Il17rc protein_coding retained_intron MGP_AJ_T0015664.1 MGP_AJ_G0013759.1 mouse_genomes_project 6 142146838 142147307 - processed_pseudogene processed_pseudogene MGP_AJ_T0015275.1 MGP_AJ_G0013370.1 mouse_genomes_project 6 19386512 19388113 + processed_pseudogene processed_pseudogene MGP_AJ_T0004921.1 MGP_AJ_G0004224.1 mouse_genomes_project 6 29134034 29137615 + Plxna4os2 antisense antisense MGP_AJ_T0001924.1 MGP_AJ_G0001837.1 mouse_genomes_project 6 14369558 14372482 + TEC TEC MGP_AJ_T0080468.1 MGP_AJ_G0031303.1 mouse_genomes_project 6 127163524 127408960 - MGP_AJ_P0080468 protein_coding protein_coding MGP_AJ_T0078272.1 MGP_AJ_G0030873.1 mouse_genomes_project 6 80176499 80179531 + Tacr1 protein_coding retained_intron MGP_AJ_T0078273.1 MGP_AJ_G0030873.1 mouse_genomes_project 6 80176640 80338290 + MGP_AJ_P0078273 Tacr1 protein_coding protein_coding MGP_AJ_T0078274.1 MGP_AJ_G0030873.1 mouse_genomes_project 6 80176952 80338295 + MGP_AJ_P0078274 Tacr1 protein_coding protein_coding MGP_AJ_T0008731.1 MGP_AJ_G0007054.1 mouse_genomes_project 6 118707275 118715305 + 1700072O05Rik lincRNA lincRNA MGP_AJ_T0078199.1 MGP_AJ_G0030854.1 mouse_genomes_project 6 70576185 70635089 - MGP_AJ_P0078199 Kcmf1 protein_coding protein_coding MGP_AJ_T0078200.1 MGP_AJ_G0030854.1 mouse_genomes_project 6 70576301 70635163 - MGP_AJ_P0078200 Kcmf1 protein_coding protein_coding MGP_AJ_T0078201.1 MGP_AJ_G0030854.1 mouse_genomes_project 6 70579683 70582727 - Kcmf1 protein_coding retained_intron MGP_AJ_T0078202.1 MGP_AJ_G0030854.1 mouse_genomes_project 6 70581549 70593091 - Kcmf1 protein_coding processed_transcript MGP_AJ_T0004972.1 MGP_AJ_G0004265.1 mouse_genomes_project 6 69840675 69843403 - 4933431G14Rik antisense antisense MGP_AJ_T0004973.1 MGP_AJ_G0004265.1 mouse_genomes_project 6 69840675 69843660 - 4933431G14Rik antisense antisense MGP_AJ_T0015434.1 MGP_AJ_G0013529.1 mouse_genomes_project 6 69591291 69592085 - processed_pseudogene processed_pseudogene MGP_AJ_T0000278.1 MGP_AJ_G0000222.1 mouse_genomes_project 6 65383643 65384110 + IG_V_pseudogene IG_V_pseudogene MGP_AJ_T0078971.1 MGP_AJ_G0031011.1 mouse_genomes_project 6 89205324 89223285 + MGP_AJ_P0078971 Hdac11 protein_coding protein_coding MGP_AJ_T0078972.1 MGP_AJ_G0031011.1 mouse_genomes_project 6 89205418 89208318 + Hdac11 protein_coding retained_intron MGP_AJ_T0078973.1 MGP_AJ_G0031011.1 mouse_genomes_project 6 89205426 89215123 + MGP_AJ_P0078973 Hdac11 protein_coding protein_coding MGP_AJ_T0078974.1 MGP_AJ_G0031011.1 mouse_genomes_project 6 89205764 89216449 + Hdac11 protein_coding retained_intron MGP_AJ_T0078975.1 MGP_AJ_G0031011.1 mouse_genomes_project 6 89214251 89218060 + MGP_AJ_P0078975 Hdac11 protein_coding nonsense_mediated_decay MGP_AJ_T0078976.1 MGP_AJ_G0031011.1 mouse_genomes_project 6 89220364 89221884 + Hdac11 protein_coding retained_intron MGP_AJ_T0077192.1 MGP_AJ_G0030581.1 mouse_genomes_project 6 37227008 37240337 + MGP_AJ_P0077192 Ssbp1 protein_coding protein_coding MGP_AJ_T0077193.1 MGP_AJ_G0030581.1 mouse_genomes_project 6 37227071 37234235 + MGP_AJ_P0077193 Ssbp1 protein_coding protein_coding MGP_AJ_T0077194.1 MGP_AJ_G0030581.1 mouse_genomes_project 6 37227109 37229946 + Ssbp1 protein_coding retained_intron MGP_AJ_T0077195.1 MGP_AJ_G0030581.1 mouse_genomes_project 6 37227124 37236632 + MGP_AJ_P0077195 Ssbp1 protein_coding protein_coding MGP_AJ_T0077196.1 MGP_AJ_G0030581.1 mouse_genomes_project 6 37227131 37236629 + MGP_AJ_P0077196 Ssbp1 protein_coding protein_coding MGP_AJ_T0077197.1 MGP_AJ_G0030581.1 mouse_genomes_project 6 37227182 37232168 + MGP_AJ_P0077197 Ssbp1 protein_coding protein_coding MGP_AJ_T0077198.1 MGP_AJ_G0030581.1 mouse_genomes_project 6 37232135 37233098 + Ssbp1 protein_coding retained_intron MGP_AJ_T0080088.1 MGP_AJ_G0031232.1 mouse_genomes_project 6 123210925 123224218 - MGP_AJ_P0080088 Ptpn6 protein_coding protein_coding MGP_AJ_T0080089.1 MGP_AJ_G0031232.1 mouse_genomes_project 6 123210925 123229758 - MGP_AJ_P0080089 Ptpn6 protein_coding protein_coding MGP_AJ_T0080090.1 MGP_AJ_G0031232.1 mouse_genomes_project 6 123210925 123229669 - MGP_AJ_P0080090 Ptpn6 protein_coding protein_coding MGP_AJ_T0080091.1 MGP_AJ_G0031232.1 mouse_genomes_project 6 123210938 123212061 - MGP_AJ_P0080091 Ptpn6 protein_coding protein_coding MGP_AJ_T0080092.1 MGP_AJ_G0031232.1 mouse_genomes_project 6 123211326 123229628 - MGP_AJ_P0080092 Ptpn6 protein_coding protein_coding MGP_AJ_T0080093.1 MGP_AJ_G0031232.1 mouse_genomes_project 6 123216397 123218525 - MGP_AJ_P0080093 Ptpn6 protein_coding protein_coding MGP_AJ_T0080094.1 MGP_AJ_G0031232.1 mouse_genomes_project 6 123216445 123218475 - MGP_AJ_P0080094 Ptpn6 protein_coding protein_coding MGP_AJ_T0080095.1 MGP_AJ_G0031232.1 mouse_genomes_project 6 123218810 123219772 - Ptpn6 protein_coding retained_intron MGP_AJ_T0080096.1 MGP_AJ_G0031232.1 mouse_genomes_project 6 123219964 123223835 - Ptpn6 protein_coding processed_transcript MGP_AJ_T0080097.1 MGP_AJ_G0031232.1 mouse_genomes_project 6 123223425 123224146 - MGP_AJ_P0080097 Ptpn6 protein_coding protein_coding MGP_AJ_T0080098.1 MGP_AJ_G0031232.1 mouse_genomes_project 6 123223718 123224174 - Ptpn6 protein_coding retained_intron MGP_AJ_T0080894.1 MGP_AJ_G0031428.1 mouse_genomes_project 6 140603024 140652582 + MGP_AJ_P0080894 Slco1b2 protein_coding unknown_likely_coding MGP_AJ_T0080895.1 MGP_AJ_G0031428.1 mouse_genomes_project 6 140603078 140662887 + MGP_AJ_P0080895 Slco1b2 protein_coding protein_coding MGP_AJ_T0080896.1 MGP_AJ_G0031428.1 mouse_genomes_project 6 140608241 140661847 + MGP_AJ_P0080896 Slco1b2 protein_coding protein_coding MGP_AJ_T0080897.1 MGP_AJ_G0031428.1 mouse_genomes_project 6 140627688 140632337 + Slco1b2 protein_coding retained_intron MGP_AJ_T0080898.1 MGP_AJ_G0031428.1 mouse_genomes_project 6 140657486 140661850 + Slco1b2 protein_coding retained_intron MGP_AJ_T0018305.1 MGP_AJ_G0015623.1 mouse_genomes_project 6 120899676 120910487 - Gm16556 processed_transcript processed_transcript MGP_AJ_T0018306.1 MGP_AJ_G0015623.1 mouse_genomes_project 6 120899702 120910463 - Gm16556 processed_transcript processed_transcript MGP_AJ_T0102060.1 MGP_AJ_G0039845.1 mouse_genomes_project 6 132103767 132107338 + transcribed_unprocessed_pseudogene processed_transcript MGP_AJ_T0102061.1 MGP_AJ_G0039845.1 mouse_genomes_project 6 132103800 132106072 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_AJ_T0008776.1 MGP_AJ_G0007088.1 mouse_genomes_project 6 142270492 142325109 + D6Ertd474e lincRNA lincRNA MGP_AJ_T0008777.1 MGP_AJ_G0007088.1 mouse_genomes_project 6 142270492 142274022 + D6Ertd474e lincRNA lincRNA MGP_AJ_T0008778.1 MGP_AJ_G0007088.1 mouse_genomes_project 6 142270497 142325472 + D6Ertd474e lincRNA lincRNA MGP_AJ_T0008779.1 MGP_AJ_G0007088.1 mouse_genomes_project 6 142270497 142326671 + D6Ertd474e lincRNA lincRNA MGP_AJ_T0008780.1 MGP_AJ_G0007088.1 mouse_genomes_project 6 142315513 142325436 + D6Ertd474e lincRNA lincRNA MGP_AJ_T0079101.1 MGP_AJ_G0031038.1 mouse_genomes_project 6 94211359 94751296 + MGP_AJ_P0079101 Fam19a1 protein_coding protein_coding MGP_AJ_T0079102.1 MGP_AJ_G0031038.1 mouse_genomes_project 6 94211447 94230213 + Fam19a1 protein_coding processed_transcript MGP_AJ_T0079103.1 MGP_AJ_G0031038.1 mouse_genomes_project 6 94212854 94214155 + Fam19a1 protein_coding processed_transcript MGP_AJ_T0079104.1 MGP_AJ_G0031038.1 mouse_genomes_project 6 94213548 94750563 + MGP_AJ_P0079104 Fam19a1 protein_coding protein_coding MGP_AJ_T0076247.1 MGP_AJ_G0030402.1 mouse_genomes_project 6 1393108 1465755 - MGP_AJ_P0076247 Sgce protein_coding protein_coding MGP_AJ_T0076248.1 MGP_AJ_G0030402.1 mouse_genomes_project 6 1393108 1465727 - MGP_AJ_P0076248 Sgce protein_coding protein_coding MGP_AJ_T0076249.1 MGP_AJ_G0030402.1 mouse_genomes_project 6 1393112 1465758 - MGP_AJ_P0076249 Sgce protein_coding protein_coding MGP_AJ_T0076250.1 MGP_AJ_G0030402.1 mouse_genomes_project 6 1393112 1465708 - MGP_AJ_P0076250 Sgce protein_coding protein_coding MGP_AJ_T0076251.1 MGP_AJ_G0030402.1 mouse_genomes_project 6 1393142 1465667 - MGP_AJ_P0076251 Sgce protein_coding protein_coding MGP_AJ_T0076252.1 MGP_AJ_G0030402.1 mouse_genomes_project 6 1393176 1465739 - MGP_AJ_P0076252 Sgce protein_coding protein_coding MGP_AJ_T0076253.1 MGP_AJ_G0030402.1 mouse_genomes_project 6 1393176 1465675 - MGP_AJ_P0076253 Sgce protein_coding protein_coding MGP_AJ_T0076254.1 MGP_AJ_G0030402.1 mouse_genomes_project 6 1396467 1465708 - Sgce protein_coding retained_intron MGP_AJ_T0076255.1 MGP_AJ_G0030402.1 mouse_genomes_project 6 1407407 1465631 - Sgce protein_coding retained_intron MGP_AJ_T0076256.1 MGP_AJ_G0030402.1 mouse_genomes_project 6 1410223 1465621 - Sgce protein_coding processed_transcript MGP_AJ_T0076257.1 MGP_AJ_G0030402.1 mouse_genomes_project 6 1410395 1465614 - MGP_AJ_P0076257 Sgce protein_coding nonsense_mediated_decay MGP_AJ_T0076258.1 MGP_AJ_G0030402.1 mouse_genomes_project 6 1426407 1430823 - Sgce protein_coding retained_intron MGP_AJ_T0076259.1 MGP_AJ_G0030402.1 mouse_genomes_project 6 1455669 1458735 - Sgce protein_coding retained_intron MGP_AJ_T0015369.1 MGP_AJ_G0013464.1 mouse_genomes_project 6 57970554 57971079 - processed_pseudogene processed_pseudogene MGP_AJ_T0015656.1 MGP_AJ_G0013751.1 mouse_genomes_project 6 138984638 138985052 + processed_pseudogene processed_pseudogene MGP_AJ_T0080386.1 MGP_AJ_G0031285.1 mouse_genomes_project 6 125972936 126001364 + MGP_AJ_P0080386 Parp11 protein_coding protein_coding MGP_AJ_T0080387.1 MGP_AJ_G0031285.1 mouse_genomes_project 6 125977296 125995258 + Parp11 protein_coding retained_intron MGP_AJ_T0080388.1 MGP_AJ_G0031285.1 mouse_genomes_project 6 125977324 126001315 + MGP_AJ_P0080388 Parp11 protein_coding nonsense_mediated_decay MGP_AJ_T0080389.1 MGP_AJ_G0031285.1 mouse_genomes_project 6 125977326 126017912 + MGP_AJ_P0080389 Parp11 protein_coding protein_coding MGP_AJ_T0080390.1 MGP_AJ_G0031285.1 mouse_genomes_project 6 125977342 125994156 + Parp11 protein_coding retained_intron MGP_AJ_T0080391.1 MGP_AJ_G0031285.1 mouse_genomes_project 6 125977351 126002286 + MGP_AJ_P0080391 Parp11 protein_coding protein_coding MGP_AJ_T0080392.1 MGP_AJ_G0031285.1 mouse_genomes_project 6 125994756 125996516 + Parp11 protein_coding retained_intron MGP_AJ_T0080393.1 MGP_AJ_G0031285.1 mouse_genomes_project 6 125997374 126002177 + Parp11 protein_coding retained_intron MGP_AJ_T0080394.1 MGP_AJ_G0031285.1 mouse_genomes_project 6 126000885 126013713 + Parp11 protein_coding retained_intron MGP_AJ_T0076412.1 MGP_AJ_G0030436.1 mouse_genomes_project 6 11362850 11405463 - MGP_AJ_P0076412 Ppp1r3a protein_coding protein_coding MGP_AJ_T0077907.1 MGP_AJ_G0030792.1 mouse_genomes_project 6 58015409 58036556 + Mmrn1 protein_coding retained_intron MGP_AJ_T0077908.1 MGP_AJ_G0030792.1 mouse_genomes_project 6 58034913 58077706 + MGP_AJ_P0077908 Mmrn1 protein_coding protein_coding MGP_AJ_T0077909.1 MGP_AJ_G0030792.1 mouse_genomes_project 6 58034915 58077706 + MGP_AJ_P0077909 Mmrn1 protein_coding protein_coding MGP_AJ_T0015268.1 MGP_AJ_G0013363.1 mouse_genomes_project 6 16430117 16432262 - processed_pseudogene processed_pseudogene MGP_AJ_T0077829.1 MGP_AJ_G0030761.1 mouse_genomes_project 6 54048650 54049585 + MGP_AJ_P0077829 Vmn1r12 protein_coding protein_coding MGP_AJ_T0078902.1 MGP_AJ_G0030988.1 mouse_genomes_project 6 87706090 87707023 + MGP_AJ_P0078902 Vmn1r40 protein_coding protein_coding MGP_AJ_T0077620.1 MGP_AJ_G0030707.1 mouse_genomes_project 6 48686869 48843032 - MGP_AJ_P0077620 Skap2 protein_coding protein_coding MGP_AJ_T0077621.1 MGP_AJ_G0030707.1 mouse_genomes_project 6 48688551 48701375 - Skap2 protein_coding processed_transcript MGP_AJ_T0077622.1 MGP_AJ_G0030707.1 mouse_genomes_project 6 48688613 48842998 - MGP_AJ_P0077622 Skap2 protein_coding protein_coding MGP_AJ_T0077623.1 MGP_AJ_G0030707.1 mouse_genomes_project 6 48689503 48738869 - MGP_AJ_P0077623 Skap2 protein_coding protein_coding MGP_AJ_T0077624.1 MGP_AJ_G0030707.1 mouse_genomes_project 6 48699808 48702116 - Skap2 protein_coding retained_intron MGP_AJ_T0077625.1 MGP_AJ_G0030707.1 mouse_genomes_project 6 48703917 48762918 - Skap2 protein_coding processed_transcript MGP_AJ_T0077626.1 MGP_AJ_G0030707.1 mouse_genomes_project 6 48821034 48843015 - Skap2 protein_coding retained_intron MGP_AJ_T0002563.1 MGP_AJ_G0002464.1 mouse_genomes_project 6 38296632 38296682 + MGP_AJ_P0002563 Trbj1-5 TR_J_gene TR_J_gene MGP_AJ_T0015337.1 MGP_AJ_G0013432.1 mouse_genomes_project 6 45864272 45864579 + processed_pseudogene processed_pseudogene MGP_AJ_T0078785.1 MGP_AJ_G0030970.1 mouse_genomes_project 6 85908998 85910215 - MGP_AJ_P0078785 H1fx protein_coding protein_coding MGP_AJ_T0078913.1 MGP_AJ_G0030997.1 mouse_genomes_project 6 88079324 88080257 - MGP_AJ_P0078913 Vmn1r49 protein_coding protein_coding MGP_AJ_T0078914.1 MGP_AJ_G0030997.1 mouse_genomes_project 6 88079324 88085757 - MGP_AJ_P0078914 Vmn1r49 protein_coding protein_coding MGP_AJ_T0076314.1 MGP_AJ_G0030415.1 mouse_genomes_project 6 3730911 3815871 + MGP_AJ_P0076314 Sdhaf3 protein_coding protein_coding MGP_AJ_T0076315.1 MGP_AJ_G0030415.1 mouse_genomes_project 6 3730914 3744279 + Sdhaf3 protein_coding processed_transcript MGP_AJ_T0001986.1 MGP_AJ_G0001899.1 mouse_genomes_project 6 49454525 49458270 - TEC TEC MGP_AJ_T0005018.1 MGP_AJ_G0004290.1 mouse_genomes_project 6 85838345 85843962 - Gm26636 antisense antisense MGP_AJ_T0098852.1 MGP_AJ_G0036836.1 mouse_genomes_project 6 138146311 138146478 - Gm25434 scaRNA scaRNA MGP_AJ_T0002167.1 MGP_AJ_G0002079.1 mouse_genomes_project 6 138701491 138703414 + TEC TEC MGP_AJ_T0002059.1 MGP_AJ_G0001972.1 mouse_genomes_project 6 85720527 85723693 - TEC TEC MGP_AJ_T0078114.1 MGP_AJ_G0030839.1 mouse_genomes_project 6 70024800 70034209 + MGP_AJ_P0078114 Sftpb protein_coding protein_coding MGP_AJ_T0078115.1 MGP_AJ_G0030839.1 mouse_genomes_project 6 70024810 70034205 + MGP_AJ_P0078115 Sftpb protein_coding nonsense_mediated_decay MGP_AJ_T0078116.1 MGP_AJ_G0030839.1 mouse_genomes_project 6 70024815 70032770 + MGP_AJ_P0078116 Sftpb protein_coding nonsense_mediated_decay MGP_AJ_T0078117.1 MGP_AJ_G0030839.1 mouse_genomes_project 6 70024815 70032770 + MGP_AJ_P0078117 Sftpb protein_coding protein_coding MGP_AJ_T0078118.1 MGP_AJ_G0030839.1 mouse_genomes_project 6 70026272 70033883 + Sftpb protein_coding retained_intron MGP_AJ_T0078778.1 MGP_AJ_G0030969.1 mouse_genomes_project 6 85843437 85866846 + MGP_AJ_P0078778 Hmces protein_coding protein_coding MGP_AJ_T0078779.1 MGP_AJ_G0030969.1 mouse_genomes_project 6 85843452 85863160 + Hmces protein_coding processed_transcript MGP_AJ_T0078780.1 MGP_AJ_G0030969.1 mouse_genomes_project 6 85843460 85844506 + Hmces protein_coding processed_transcript MGP_AJ_T0078781.1 MGP_AJ_G0030969.1 mouse_genomes_project 6 85843481 85851129 + MGP_AJ_P0078781 Hmces protein_coding nonsense_mediated_decay MGP_AJ_T0078782.1 MGP_AJ_G0030969.1 mouse_genomes_project 6 85843808 85866846 + MGP_AJ_P0078782 Hmces protein_coding protein_coding MGP_AJ_T0078783.1 MGP_AJ_G0030969.1 mouse_genomes_project 6 85847426 85863537 + Hmces protein_coding processed_transcript MGP_AJ_T0078784.1 MGP_AJ_G0030969.1 mouse_genomes_project 6 85863104 85866746 + Hmces protein_coding retained_intron MGP_AJ_T0008781.1 MGP_AJ_G0007089.1 mouse_genomes_project 6 142565753 142567297 - 4930579D09Rik lincRNA lincRNA MGP_AJ_T0081103.1 MGP_AJ_G0031466.1 mouse_genomes_project 6 145805173 145814674 + Arntl2 protein_coding processed_transcript MGP_AJ_T0081104.1 MGP_AJ_G0031466.1 mouse_genomes_project 6 145805183 145842664 + MGP_AJ_P0081104 Arntl2 protein_coding protein_coding MGP_AJ_T0081105.1 MGP_AJ_G0031466.1 mouse_genomes_project 6 145814625 145841653 + MGP_AJ_P0081105 Arntl2 protein_coding protein_coding MGP_AJ_T0081106.1 MGP_AJ_G0031466.1 mouse_genomes_project 6 145814625 145841653 + MGP_AJ_P0081106 Arntl2 protein_coding nonsense_mediated_decay MGP_AJ_T0081107.1 MGP_AJ_G0031466.1 mouse_genomes_project 6 145814625 145841653 + MGP_AJ_P0081107 Arntl2 protein_coding protein_coding MGP_AJ_T0081108.1 MGP_AJ_G0031466.1 mouse_genomes_project 6 145814625 145841653 + MGP_AJ_P0081108 Arntl2 protein_coding protein_coding MGP_AJ_T0081109.1 MGP_AJ_G0031466.1 mouse_genomes_project 6 145829469 145832187 + Arntl2 protein_coding retained_intron MGP_AJ_T0081110.1 MGP_AJ_G0031466.1 mouse_genomes_project 6 145831645 145832932 + Arntl2 protein_coding retained_intron MGP_AJ_T0081111.1 MGP_AJ_G0031466.1 mouse_genomes_project 6 145839535 145842657 + Arntl2 protein_coding retained_intron MGP_AJ_T0076719.1 MGP_AJ_G0030499.1 mouse_genomes_project 6 26113437 26124410 - Kcp protein_coding retained_intron MGP_AJ_T0076720.1 MGP_AJ_G0030499.1 mouse_genomes_project 6 26122301 26149412 - MGP_AJ_P0076720 Kcp protein_coding nonsense_mediated_decay MGP_AJ_T0076721.1 MGP_AJ_G0030499.1 mouse_genomes_project 6 26122301 26125126 - MGP_AJ_P0076721 Kcp protein_coding nonsense_mediated_decay MGP_AJ_T0076722.1 MGP_AJ_G0030499.1 mouse_genomes_project 6 26122301 26137388 - MGP_AJ_P0076722 Kcp protein_coding nonsense_mediated_decay MGP_AJ_T0076723.1 MGP_AJ_G0030499.1 mouse_genomes_project 6 26122510 26149401 - MGP_AJ_P0076723 Kcp protein_coding protein_coding MGP_AJ_T0076724.1 MGP_AJ_G0030499.1 mouse_genomes_project 6 26123958 26125238 - Kcp protein_coding retained_intron MGP_AJ_T0076725.1 MGP_AJ_G0030499.1 mouse_genomes_project 6 26138318 26140082 - Kcp protein_coding retained_intron MGP_AJ_T0076726.1 MGP_AJ_G0030499.1 mouse_genomes_project 6 26139403 26144299 - MGP_AJ_P0076726 Kcp protein_coding nonsense_mediated_decay MGP_AJ_T0076727.1 MGP_AJ_G0030499.1 mouse_genomes_project 6 26143764 26149427 - MGP_AJ_P0076727 Kcp protein_coding nonsense_mediated_decay MGP_AJ_T0081131.1 MGP_AJ_G0031471.1 mouse_genomes_project 6 146049125 146056942 + Mrps35 protein_coding retained_intron MGP_AJ_T0081132.1 MGP_AJ_G0031471.1 mouse_genomes_project 6 146049125 146080456 + MGP_AJ_P0081132 Mrps35 protein_coding protein_coding MGP_AJ_T0081133.1 MGP_AJ_G0031471.1 mouse_genomes_project 6 146050952 146062388 + MGP_AJ_P0081133 Mrps35 protein_coding protein_coding MGP_AJ_T0081134.1 MGP_AJ_G0031471.1 mouse_genomes_project 6 146066750 146077269 + Mrps35 protein_coding processed_transcript MGP_AJ_T0081135.1 MGP_AJ_G0031471.1 mouse_genomes_project 6 146067762 146077348 + Mrps35 protein_coding processed_transcript MGP_AJ_T0101334.1 MGP_AJ_G0039300.1 mouse_genomes_project 6 36150733 36150864 - Gm25402 snoRNA snoRNA MGP_AJ_T0005089.1 MGP_AJ_G0004342.1 mouse_genomes_project 6 126462285 126472373 - Gm15870 antisense antisense MGP_AJ_T0015672.1 MGP_AJ_G0013767.1 mouse_genomes_project 6 146282798 146283611 + processed_pseudogene processed_pseudogene MGP_AJ_T0078181.1 MGP_AJ_G0030850.1 mouse_genomes_project 6 70294545 70326959 - MGP_AJ_P0078181 Elmod3 protein_coding protein_coding MGP_AJ_T0078182.1 MGP_AJ_G0030850.1 mouse_genomes_project 6 70294557 70326960 - MGP_AJ_P0078182 Elmod3 protein_coding protein_coding MGP_AJ_T0078183.1 MGP_AJ_G0030850.1 mouse_genomes_project 6 70296173 70327012 - MGP_AJ_P0078183 Elmod3 protein_coding protein_coding MGP_AJ_T0078184.1 MGP_AJ_G0030850.1 mouse_genomes_project 6 70297951 70326978 - MGP_AJ_P0078184 Elmod3 protein_coding protein_coding MGP_AJ_T0078185.1 MGP_AJ_G0030850.1 mouse_genomes_project 6 70313086 70323649 - Elmod3 protein_coding processed_transcript MGP_AJ_T0078186.1 MGP_AJ_G0030850.1 mouse_genomes_project 6 70316250 70327030 - MGP_AJ_P0078186 Elmod3 protein_coding protein_coding MGP_AJ_T0002490.1 MGP_AJ_G0002398.1 mouse_genomes_project 6 38299761 38300869 + MGP_AJ_P0002490 Trbc1 TR_C_gene TR_C_gene MGP_AJ_T0002491.1 MGP_AJ_G0002398.1 mouse_genomes_project 6 38299761 38301403 + MGP_AJ_P0002491 Trbc1 TR_C_gene TR_C_gene MGP_AJ_T0076320.1 MGP_AJ_G0030417.1 mouse_genomes_project 6 4432025 4450094 - MGP_AJ_P0076320 Asns protein_coding protein_coding MGP_AJ_T0076321.1 MGP_AJ_G0030417.1 mouse_genomes_project 6 4432025 4449711 - MGP_AJ_P0076321 Asns protein_coding protein_coding MGP_AJ_T0076322.1 MGP_AJ_G0030417.1 mouse_genomes_project 6 4432326 4434242 - Asns protein_coding processed_transcript MGP_AJ_T0076323.1 MGP_AJ_G0030417.1 mouse_genomes_project 6 4438133 4439211 - Asns protein_coding retained_intron MGP_AJ_T0076324.1 MGP_AJ_G0030417.1 mouse_genomes_project 6 4439125 4449950 - MGP_AJ_P0076324 Asns protein_coding protein_coding MGP_AJ_T0076325.1 MGP_AJ_G0030417.1 mouse_genomes_project 6 4442034 4449073 - MGP_AJ_P0076325 Asns protein_coding protein_coding MGP_AJ_T0076326.1 MGP_AJ_G0030417.1 mouse_genomes_project 6 4442126 4449712 - MGP_AJ_P0076326 Asns protein_coding protein_coding MGP_AJ_T0076497.1 MGP_AJ_G0030447.1 mouse_genomes_project 6 14712217 14766057 - MGP_AJ_P0076497 Asz1 protein_coding protein_coding MGP_AJ_T0076498.1 MGP_AJ_G0030447.1 mouse_genomes_project 6 14712236 14766044 - Asz1 protein_coding retained_intron MGP_AJ_T0076499.1 MGP_AJ_G0030447.1 mouse_genomes_project 6 14729418 14730722 - Asz1 protein_coding retained_intron MGP_AJ_T0076500.1 MGP_AJ_G0030447.1 mouse_genomes_project 6 14731390 14766045 - MGP_AJ_P0076500 Asz1 protein_coding nonsense_mediated_decay MGP_AJ_T0076501.1 MGP_AJ_G0030447.1 mouse_genomes_project 6 14732677 14766061 - Asz1 protein_coding processed_transcript MGP_AJ_T0080746.1 MGP_AJ_G0031401.1 mouse_genomes_project 6 135658306 135660139 + MGP_AJ_P0080746 H2afj protein_coding protein_coding MGP_AJ_T0080747.1 MGP_AJ_G0031401.1 mouse_genomes_project 6 135658395 135659853 + MGP_AJ_P0080747 H2afj protein_coding protein_coding MGP_AJ_T0077169.1 MGP_AJ_G0030576.1 mouse_genomes_project 6 36539490 36548738 - MGP_AJ_P0077169 Mrps33 protein_coding protein_coding MGP_AJ_T0077170.1 MGP_AJ_G0030576.1 mouse_genomes_project 6 36539878 36548635 - MGP_AJ_P0077170 Mrps33 protein_coding protein_coding MGP_AJ_T0077171.1 MGP_AJ_G0030576.1 mouse_genomes_project 6 36540070 36543793 - MGP_AJ_P0077171 Mrps33 protein_coding protein_coding MGP_AJ_T0077172.1 MGP_AJ_G0030576.1 mouse_genomes_project 6 36542992 36548643 - Mrps33 protein_coding retained_intron MGP_AJ_T0100130.1 MGP_AJ_G0038096.1 mouse_genomes_project 6 148076158 148076262 - Gm23462 snRNA snRNA MGP_AJ_T0015562.1 MGP_AJ_G0013657.1 mouse_genomes_project 6 118023809 118024693 + processed_pseudogene processed_pseudogene MGP_AJ_T0018229.1 MGP_AJ_G0015601.1 mouse_genomes_project 6 13095915 13108569 - Gm43996 processed_transcript lincRNA MGP_AJ_T0018230.1 MGP_AJ_G0015601.1 mouse_genomes_project 6 13106855 13108523 - Gm43996 processed_transcript retained_intron MGP_AJ_T0079034.1 MGP_AJ_G0031023.1 mouse_genomes_project 6 90039806 90137578 + MGP_AJ_P0079034 Fgd5 protein_coding protein_coding MGP_AJ_T0079035.1 MGP_AJ_G0031023.1 mouse_genomes_project 6 90128999 90137575 + Fgd5 protein_coding retained_intron MGP_AJ_T0079036.1 MGP_AJ_G0031023.1 mouse_genomes_project 6 90132758 90135786 + Fgd5 protein_coding retained_intron MGP_AJ_T0015274.1 MGP_AJ_G0013369.1 mouse_genomes_project 6 19309964 19310740 + processed_pseudogene processed_pseudogene MGP_AJ_T0001953.1 MGP_AJ_G0001866.1 mouse_genomes_project 6 36842891 36845342 + TEC TEC MGP_AJ_T0078015.1 MGP_AJ_G0030819.1 mouse_genomes_project 6 68548065 68613130 + MGP_AJ_P0078015 Eif2ak3 protein_coding protein_coding MGP_AJ_T0078016.1 MGP_AJ_G0030819.1 mouse_genomes_project 6 68548103 68568321 + MGP_AJ_P0078016 Eif2ak3 protein_coding protein_coding MGP_AJ_T0078017.1 MGP_AJ_G0030819.1 mouse_genomes_project 6 68548106 68549170 + Eif2ak3 protein_coding retained_intron MGP_AJ_T0078018.1 MGP_AJ_G0030819.1 mouse_genomes_project 6 68582057 68598518 + Eif2ak3 protein_coding retained_intron MGP_AJ_T0078019.1 MGP_AJ_G0030819.1 mouse_genomes_project 6 68601845 68605340 + Eif2ak3 protein_coding retained_intron MGP_AJ_T0079271.1 MGP_AJ_G0031071.1 mouse_genomes_project 6 106862563 106908643 + MGP_AJ_P0079271 Arl8b protein_coding protein_coding MGP_AJ_T0004939.1 MGP_AJ_G0004240.1 mouse_genomes_project 6 39060418 39081231 - Gm44284 antisense antisense MGP_AJ_T0078550.1 MGP_AJ_G0030924.1 mouse_genomes_project 6 83320321 83338513 + MGP_AJ_P0078550 Cct7 protein_coding protein_coding MGP_AJ_T0078551.1 MGP_AJ_G0030924.1 mouse_genomes_project 6 83320826 83324821 + Cct7 protein_coding retained_intron MGP_AJ_T0078552.1 MGP_AJ_G0030924.1 mouse_genomes_project 6 83320859 83338320 + MGP_AJ_P0078552 Cct7 protein_coding nonsense_mediated_decay MGP_AJ_T0078553.1 MGP_AJ_G0030924.1 mouse_genomes_project 6 83320899 83338320 + MGP_AJ_P0078553 Cct7 protein_coding protein_coding MGP_AJ_T0078554.1 MGP_AJ_G0030924.1 mouse_genomes_project 6 83329752 83334948 + Cct7 protein_coding retained_intron MGP_AJ_T0078555.1 MGP_AJ_G0030924.1 mouse_genomes_project 6 83330785 83335975 + Cct7 protein_coding retained_intron MGP_AJ_T0078556.1 MGP_AJ_G0030924.1 mouse_genomes_project 6 83331166 83336126 + MGP_AJ_P0078556 Cct7 protein_coding protein_coding MGP_AJ_T0015489.1 MGP_AJ_G0013584.1 mouse_genomes_project 6 92425112 92425876 - processed_pseudogene processed_pseudogene MGP_AJ_T0004987.1 MGP_AJ_G0004274.1 mouse_genomes_project 6 80913686 80915569 + Gm44287 antisense antisense MGP_AJ_T0077048.1 MGP_AJ_G0030552.1 mouse_genomes_project 6 34687145 34752792 - MGP_AJ_P0077048 Svopl protein_coding protein_coding MGP_AJ_T0077049.1 MGP_AJ_G0030552.1 mouse_genomes_project 6 34687918 34735812 - MGP_AJ_P0077049 Svopl protein_coding nonsense_mediated_decay MGP_AJ_T0077050.1 MGP_AJ_G0030552.1 mouse_genomes_project 6 34718814 34728083 - Svopl protein_coding retained_intron MGP_AJ_T0077051.1 MGP_AJ_G0030552.1 mouse_genomes_project 6 34719116 34722608 - Svopl protein_coding retained_intron MGP_AJ_T0077052.1 MGP_AJ_G0030552.1 mouse_genomes_project 6 34719269 34752792 - Svopl protein_coding retained_intron MGP_AJ_T0004907.1 MGP_AJ_G0004212.1 mouse_genomes_project 6 13853447 14037388 - Gm15581 antisense antisense MGP_AJ_T0015311.1 MGP_AJ_G0013406.1 mouse_genomes_project 6 38256261 38256708 - processed_pseudogene processed_pseudogene MGP_AJ_T0101366.1 MGP_AJ_G0039332.1 mouse_genomes_project 6 95246773 95246904 - Gm26175 snoRNA snoRNA MGP_AJ_T0004911.1 MGP_AJ_G0004216.1 mouse_genomes_project 6 18536963 18538029 + Gm42582 antisense antisense MGP_AJ_T0015650.1 MGP_AJ_G0013745.1 mouse_genomes_project 6 135336855 135337915 - processed_pseudogene processed_pseudogene MGP_AJ_T0000146.1 MGP_AJ_G0000111.1 mouse_genomes_project 6 65226203 65226982 + MGP_AJ_P0000146 Igkv1-117 IG_V_gene IG_V_gene MGP_AJ_T0011637.1 MGP_AJ_G0009759.1 mouse_genomes_project 6 44390180 44390257 + Gm25283 misc_RNA misc_RNA MGP_AJ_T0015227.1 MGP_AJ_G0013322.1 mouse_genomes_project 6 999370 999466 - processed_pseudogene processed_pseudogene MGP_AJ_T0078574.1 MGP_AJ_G0030933.1 mouse_genomes_project 6 83801751 83805667 + Tprkb protein_coding processed_transcript MGP_AJ_T0078575.1 MGP_AJ_G0030933.1 mouse_genomes_project 6 83801763 83818529 + MGP_AJ_P0078575 Tprkb protein_coding protein_coding MGP_AJ_T0078576.1 MGP_AJ_G0030933.1 mouse_genomes_project 6 83801777 83806053 + Tprkb protein_coding processed_transcript MGP_AJ_T0078577.1 MGP_AJ_G0030933.1 mouse_genomes_project 6 83801793 83813973 + Tprkb protein_coding processed_transcript MGP_AJ_T0078578.1 MGP_AJ_G0030933.1 mouse_genomes_project 6 83804523 83806487 + Tprkb protein_coding retained_intron MGP_AJ_T0078579.1 MGP_AJ_G0030933.1 mouse_genomes_project 6 83806160 83817204 + MGP_AJ_P0078579 Tprkb protein_coding protein_coding MGP_AJ_T0078580.1 MGP_AJ_G0030933.1 mouse_genomes_project 6 83806179 83819880 + MGP_AJ_P0078580 Tprkb protein_coding protein_coding MGP_AJ_T0078581.1 MGP_AJ_G0030933.1 mouse_genomes_project 6 83806179 83817691 + MGP_AJ_P0078581 Tprkb protein_coding protein_coding MGP_AJ_T0078582.1 MGP_AJ_G0030933.1 mouse_genomes_project 6 83806188 83819878 + MGP_AJ_P0078582 Tprkb protein_coding protein_coding MGP_AJ_T0078583.1 MGP_AJ_G0030933.1 mouse_genomes_project 6 83806188 83818116 + MGP_AJ_P0078583 Tprkb protein_coding protein_coding MGP_AJ_T0078584.1 MGP_AJ_G0030933.1 mouse_genomes_project 6 83806196 83818621 + MGP_AJ_P0078584 Tprkb protein_coding protein_coding MGP_AJ_T0078585.1 MGP_AJ_G0030933.1 mouse_genomes_project 6 83806197 83814212 + Tprkb protein_coding processed_transcript MGP_AJ_T0078586.1 MGP_AJ_G0030933.1 mouse_genomes_project 6 83806198 83817487 + MGP_AJ_P0078586 Tprkb protein_coding protein_coding MGP_AJ_T0078587.1 MGP_AJ_G0030933.1 mouse_genomes_project 6 83806239 83817536 + MGP_AJ_P0078587 Tprkb protein_coding protein_coding MGP_AJ_T0077145.1 MGP_AJ_G0030571.1 mouse_genomes_project 6 36194153 36288916 - MGP_AJ_P0077145 Dennd2a protein_coding protein_coding MGP_AJ_T0077146.1 MGP_AJ_G0030571.1 mouse_genomes_project 6 36195028 36220473 - Dennd2a protein_coding retained_intron MGP_AJ_T0077147.1 MGP_AJ_G0030571.1 mouse_genomes_project 6 36200296 36202417 - Dennd2a protein_coding retained_intron MGP_AJ_T0077148.1 MGP_AJ_G0030571.1 mouse_genomes_project 6 36215885 36217763 - Dennd2a protein_coding retained_intron MGP_AJ_T0077149.1 MGP_AJ_G0030571.1 mouse_genomes_project 6 36228142 36288916 - MGP_AJ_P0077149 Dennd2a protein_coding protein_coding MGP_AJ_T0002066.1 MGP_AJ_G0001979.1 mouse_genomes_project 6 86150344 86150602 - TEC TEC MGP_AJ_T0002047.1 MGP_AJ_G0001960.1 mouse_genomes_project 6 84402828 84404566 + TEC TEC MGP_AJ_T0015640.1 MGP_AJ_G0013735.1 mouse_genomes_project 6 131508620 131508979 - processed_pseudogene processed_pseudogene MGP_AJ_T0002188.1 MGP_AJ_G0002100.1 mouse_genomes_project 6 148053422 148056146 - TEC TEC MGP_AJ_T0011626.1 MGP_AJ_G0009748.1 mouse_genomes_project 6 14345592 14345771 + Gm27365 misc_RNA misc_RNA MGP_AJ_T0100124.1 MGP_AJ_G0038090.1 mouse_genomes_project 6 128847532 128847607 + Gm24676 snRNA snRNA MGP_AJ_T0000315.1 MGP_AJ_G0000259.1 mouse_genomes_project 6 67905231 67905797 - IG_V_pseudogene IG_V_pseudogene MGP_AJ_T0080517.1 MGP_AJ_G0031318.1 mouse_genomes_project 6 127983526 128000031 + MGP_AJ_P0080517 Clec9a protein_coding protein_coding MGP_AJ_T0080518.1 MGP_AJ_G0031318.1 mouse_genomes_project 6 127983527 127997837 + MGP_AJ_P0080518 Clec9a protein_coding protein_coding MGP_AJ_T0080519.1 MGP_AJ_G0031318.1 mouse_genomes_project 6 127983619 127997626 + MGP_AJ_P0080519 Clec9a protein_coding protein_coding MGP_AJ_T0080520.1 MGP_AJ_G0031318.1 mouse_genomes_project 6 127983619 127997626 + MGP_AJ_P0080520 Clec9a protein_coding protein_coding MGP_AJ_T0000178.1 MGP_AJ_G0000135.1 mouse_genomes_project 6 67152221 67152757 - MGP_AJ_P0000178 Igkv4-53 IG_V_gene IG_V_gene MGP_AJ_T0000179.1 MGP_AJ_G0000135.1 mouse_genomes_project 6 67152221 67152508 - MGP_AJ_P0000179 Igkv4-53 IG_V_gene IG_V_gene MGP_AJ_T0080889.1 MGP_AJ_G0031427.1 mouse_genomes_project 6 140495562 140541042 + MGP_AJ_P0080889 Slco1c1 protein_coding nonsense_mediated_decay MGP_AJ_T0080890.1 MGP_AJ_G0031427.1 mouse_genomes_project 6 140495580 140541058 + MGP_AJ_P0080890 Slco1c1 protein_coding nonsense_mediated_decay MGP_AJ_T0080891.1 MGP_AJ_G0031427.1 mouse_genomes_project 6 140495584 140541060 + MGP_AJ_P0080891 Slco1c1 protein_coding protein_coding MGP_AJ_T0080892.1 MGP_AJ_G0031427.1 mouse_genomes_project 6 140495729 140541451 + MGP_AJ_P0080892 Slco1c1 protein_coding protein_coding MGP_AJ_T0080893.1 MGP_AJ_G0031427.1 mouse_genomes_project 6 140517409 140519709 + Slco1c1 protein_coding retained_intron MGP_AJ_T0077318.1 MGP_AJ_G0030632.1 mouse_genomes_project 6 39402457 39444117 - MGP_AJ_P0077318 Tcaf1 protein_coding protein_coding MGP_AJ_T0077319.1 MGP_AJ_G0030632.1 mouse_genomes_project 6 39404397 39427116 - MGP_AJ_P0077319 Tcaf1 protein_coding protein_coding MGP_AJ_T0077320.1 MGP_AJ_G0030632.1 mouse_genomes_project 6 39405484 39427088 - MGP_AJ_P0077320 Tcaf1 protein_coding protein_coding MGP_AJ_T0077321.1 MGP_AJ_G0030632.1 mouse_genomes_project 6 39411146 39427032 - Tcaf1 protein_coding retained_intron MGP_AJ_T0077322.1 MGP_AJ_G0030632.1 mouse_genomes_project 6 39413476 39444100 - Tcaf1 protein_coding processed_transcript MGP_AJ_T0077323.1 MGP_AJ_G0030632.1 mouse_genomes_project 6 39419267 39444100 - Tcaf1 protein_coding retained_intron MGP_AJ_T0077324.1 MGP_AJ_G0030632.1 mouse_genomes_project 6 39424327 39427037 - Tcaf1 protein_coding processed_transcript MGP_AJ_T0077325.1 MGP_AJ_G0030632.1 mouse_genomes_project 6 39443125 39444101 - Tcaf1 protein_coding processed_transcript MGP_AJ_T0002092.1 MGP_AJ_G0002005.1 mouse_genomes_project 6 92910508 92911513 + TEC TEC MGP_AJ_T0005072.1 MGP_AJ_G0004327.1 mouse_genomes_project 6 119378145 119380415 - Gm15856 antisense antisense MGP_AJ_T0002016.1 MGP_AJ_G0001929.1 mouse_genomes_project 6 70916604 70918547 + TEC TEC MGP_AJ_T0015356.1 MGP_AJ_G0013451.1 mouse_genomes_project 6 51036556 51037530 - processed_pseudogene processed_pseudogene MGP_AJ_T0002093.1 MGP_AJ_G0002006.1 mouse_genomes_project 6 95232108 95235635 + TEC TEC MGP_AJ_T0078567.1 MGP_AJ_G0030929.1 mouse_genomes_project 6 83708517 83710209 - MGP_AJ_P0078567 Nat8 protein_coding protein_coding MGP_AJ_T0080680.1 MGP_AJ_G0031386.1 mouse_genomes_project 6 133755944 133761070 + MGP_AJ_P0080680 Cdkn1b protein_coding protein_coding MGP_AJ_T0080681.1 MGP_AJ_G0031386.1 mouse_genomes_project 6 133755944 133761070 + MGP_AJ_P0080681 Cdkn1b protein_coding protein_coding MGP_AJ_T0080682.1 MGP_AJ_G0031386.1 mouse_genomes_project 6 133756057 133760875 + MGP_AJ_P0080682 Cdkn1b protein_coding protein_coding MGP_AJ_T0077927.1 MGP_AJ_G0030795.1 mouse_genomes_project 6 61813578 61815699 + MGP_AJ_P0077927 Atoh1 protein_coding protein_coding MGP_AJ_T0001939.1 MGP_AJ_G0001852.1 mouse_genomes_project 6 25423077 25426328 + TEC TEC MGP_AJ_T0008648.1 MGP_AJ_G0006990.1 mouse_genomes_project 6 76659646 76659966 - Gm29005 lincRNA lincRNA MGP_AJ_T0080621.1 MGP_AJ_G0031368.1 mouse_genomes_project 6 131605245 131606182 + MGP_AJ_P0080621 Tas2r125 protein_coding protein_coding MGP_AJ_T0078398.1 MGP_AJ_G0030898.1 mouse_genomes_project 6 81120343 81128766 + Mob1a protein_coding processed_transcript MGP_AJ_T0078399.1 MGP_AJ_G0030898.1 mouse_genomes_project 6 81120361 81126774 + MGP_AJ_P0078399 Mob1a protein_coding nonsense_mediated_decay MGP_AJ_T0078400.1 MGP_AJ_G0030898.1 mouse_genomes_project 6 81120405 81138098 + MGP_AJ_P0078400 Mob1a protein_coding protein_coding MGP_AJ_T0078401.1 MGP_AJ_G0030898.1 mouse_genomes_project 6 81120579 81138023 + MGP_AJ_P0078401 Mob1a protein_coding protein_coding MGP_AJ_T0018313.1 MGP_AJ_G0015626.1 mouse_genomes_project 6 123983757 123999164 + Gm26728 processed_transcript antisense MGP_AJ_T0018314.1 MGP_AJ_G0015626.1 mouse_genomes_project 6 123983761 123985296 + Gm26728 processed_transcript retained_intron MGP_AJ_T0018315.1 MGP_AJ_G0015626.1 mouse_genomes_project 6 123983763 123989070 + Gm26728 processed_transcript antisense MGP_AJ_T0005121.1 MGP_AJ_G0004369.1 mouse_genomes_project 6 144088386 144095906 + antisense antisense MGP_AJ_T0076523.1 MGP_AJ_G0030453.1 mouse_genomes_project 6 18448618 18536626 - MGP_AJ_P0076523 Tspan12 protein_coding protein_coding MGP_AJ_T0076524.1 MGP_AJ_G0030453.1 mouse_genomes_project 6 18448618 18537061 - MGP_AJ_P0076524 Tspan12 protein_coding protein_coding MGP_AJ_T0076525.1 MGP_AJ_G0030453.1 mouse_genomes_project 6 18472767 18536519 - MGP_AJ_P0076525 Tspan12 protein_coding protein_coding MGP_AJ_T0076526.1 MGP_AJ_G0030453.1 mouse_genomes_project 6 18477149 18536452 - MGP_AJ_P0076526 Tspan12 protein_coding protein_coding MGP_AJ_T0076527.1 MGP_AJ_G0030453.1 mouse_genomes_project 6 18521187 18536707 - MGP_AJ_P0076527 Tspan12 protein_coding protein_coding MGP_AJ_T0076528.1 MGP_AJ_G0030453.1 mouse_genomes_project 6 18535542 18536366 - MGP_AJ_P0076528 Tspan12 protein_coding protein_coding MGP_AJ_T0078438.1 MGP_AJ_G0030906.1 mouse_genomes_project 6 81516707 81543688 + MGP_AJ_P0078438 Vax2 protein_coding protein_coding MGP_AJ_T0077404.1 MGP_AJ_G0030659.1 mouse_genomes_project 6 44668264 44680409 + MGP_AJ_P0077404 Zfp212 protein_coding protein_coding MGP_AJ_T0077405.1 MGP_AJ_G0030659.1 mouse_genomes_project 6 44674085 44674926 + Zfp212 protein_coding retained_intron MGP_AJ_T0101844.1 MGP_AJ_G0039738.1 mouse_genomes_project 6 38840983 38841832 - transcribed_processed_pseudogene processed_transcript MGP_AJ_T0101845.1 MGP_AJ_G0039738.1 mouse_genomes_project 6 38841391 38841751 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0076940.1 MGP_AJ_G0030532.1 mouse_genomes_project 6 31108351 31119162 + MGP_AJ_P0076940 Akr1b7 protein_coding protein_coding MGP_AJ_T0080568.1 MGP_AJ_G0031335.1 mouse_genomes_project 6 128561957 128834827 - MGP_AJ_P0080568 protein_coding protein_coding MGP_AJ_T0015263.1 MGP_AJ_G0013358.1 mouse_genomes_project 6 14940191 14941152 + processed_pseudogene processed_pseudogene MGP_AJ_T0101375.1 MGP_AJ_G0039341.1 mouse_genomes_project 6 116223507 116223639 - Gm23908 snoRNA snoRNA MGP_AJ_T0002145.1 MGP_AJ_G0002057.1 mouse_genomes_project 6 126331683 126334451 - TEC TEC MGP_AJ_T0005024.1 MGP_AJ_G0004293.1 mouse_genomes_project 6 86385707 86386534 + Gm44264 antisense antisense MGP_AJ_T0080729.1 MGP_AJ_G0031398.1 mouse_genomes_project 6 135369796 135460654 + MGP_AJ_P0080729 Atf7ip protein_coding protein_coding MGP_AJ_T0080730.1 MGP_AJ_G0031398.1 mouse_genomes_project 6 135369800 135415337 + MGP_AJ_P0080730 Atf7ip protein_coding protein_coding MGP_AJ_T0080731.1 MGP_AJ_G0031398.1 mouse_genomes_project 6 135369835 135433293 + MGP_AJ_P0080731 Atf7ip protein_coding protein_coding MGP_AJ_T0080732.1 MGP_AJ_G0031398.1 mouse_genomes_project 6 135369840 135375388 + Atf7ip protein_coding retained_intron MGP_AJ_T0080733.1 MGP_AJ_G0031398.1 mouse_genomes_project 6 135384111 135437564 + MGP_AJ_P0080733 Atf7ip protein_coding protein_coding MGP_AJ_T0080734.1 MGP_AJ_G0031398.1 mouse_genomes_project 6 135402729 135411451 + MGP_AJ_P0080734 Atf7ip protein_coding protein_coding MGP_AJ_T0080735.1 MGP_AJ_G0031398.1 mouse_genomes_project 6 135405555 135411634 + MGP_AJ_P0080735 Atf7ip protein_coding protein_coding MGP_AJ_T0080736.1 MGP_AJ_G0031398.1 mouse_genomes_project 6 135405573 135406769 + Atf7ip protein_coding retained_intron MGP_AJ_T0080737.1 MGP_AJ_G0031398.1 mouse_genomes_project 6 135412383 135422845 + MGP_AJ_P0080737 Atf7ip protein_coding protein_coding MGP_AJ_T0080738.1 MGP_AJ_G0031398.1 mouse_genomes_project 6 135427906 135433240 + Atf7ip protein_coding retained_intron MGP_AJ_T0080739.1 MGP_AJ_G0031398.1 mouse_genomes_project 6 135445389 135458092 + Atf7ip protein_coding retained_intron MGP_AJ_T0001961.1 MGP_AJ_G0001874.1 mouse_genomes_project 6 41940357 41942919 + TEC TEC MGP_AJ_T0078354.1 MGP_AJ_G0030891.1 mouse_genomes_project 6 80912931 80916603 - MGP_AJ_P0078354 Ino80b protein_coding nonsense_mediated_decay MGP_AJ_T0078355.1 MGP_AJ_G0030891.1 mouse_genomes_project 6 80912931 80916603 - MGP_AJ_P0078355 Ino80b protein_coding protein_coding MGP_AJ_T0078356.1 MGP_AJ_G0030891.1 mouse_genomes_project 6 80912994 80916201 - MGP_AJ_P0078356 Ino80b protein_coding protein_coding MGP_AJ_T0078357.1 MGP_AJ_G0030891.1 mouse_genomes_project 6 80915584 80916040 - Ino80b protein_coding retained_intron MGP_AJ_T0015283.1 MGP_AJ_G0013378.1 mouse_genomes_project 6 22593432 22593767 - processed_pseudogene processed_pseudogene MGP_AJ_T0015359.1 MGP_AJ_G0013454.1 mouse_genomes_project 6 55134324 55134583 + processed_pseudogene processed_pseudogene MGP_AJ_T0015516.1 MGP_AJ_G0013611.1 mouse_genomes_project 6 101378367 101378804 - processed_pseudogene processed_pseudogene MGP_AJ_T0000170.1 MGP_AJ_G0000129.1 mouse_genomes_project 6 66161957 66162419 - MGP_AJ_P0000170 Igkv12-89 IG_V_gene IG_V_gene MGP_AJ_T0000171.1 MGP_AJ_G0000129.1 mouse_genomes_project 6 66161957 66162419 - MGP_AJ_P0000171 Igkv12-89 IG_V_gene IG_V_gene MGP_AJ_T0010792.1 MGP_AJ_G0008914.1 mouse_genomes_project 6 105509207 105509333 - Gm27690 miRNA miRNA MGP_AJ_T0015507.1 MGP_AJ_G0013602.1 mouse_genomes_project 6 98838213 98838796 + processed_pseudogene processed_pseudogene MGP_AJ_T0079282.1 MGP_AJ_G0031074.1 mouse_genomes_project 6 110337234 110394727 + MGP_AJ_P0079282 Lmcd1 protein_coding protein_coding MGP_AJ_T0010774.1 MGP_AJ_G0008896.1 mouse_genomes_project 6 72172594 72172704 - Gm22254 miRNA miRNA MGP_AJ_T0015531.1 MGP_AJ_G0013626.1 mouse_genomes_project 6 107630142 107630399 + processed_pseudogene processed_pseudogene MGP_AJ_T0015453.1 MGP_AJ_G0013548.1 mouse_genomes_project 6 77293311 77294071 + processed_pseudogene processed_pseudogene MGP_AJ_T0008786.1 MGP_AJ_G0007094.1 mouse_genomes_project 6 145046497 145048725 - Gm44269 lincRNA lincRNA MGP_AJ_T0018307.1 MGP_AJ_G0015624.1 mouse_genomes_project 6 123521945 123534090 + Gm44597 processed_transcript retained_intron MGP_AJ_T0018308.1 MGP_AJ_G0015624.1 mouse_genomes_project 6 123521974 123534045 + Gm44597 processed_transcript retained_intron MGP_AJ_T0000176.1 MGP_AJ_G0000133.1 mouse_genomes_project 6 66257185 66257651 - MGP_AJ_P0000176 Igkv13-84 IG_V_gene IG_V_gene MGP_AJ_T0015264.1 MGP_AJ_G0013359.1 mouse_genomes_project 6 15429102 15429366 + processed_pseudogene processed_pseudogene MGP_AJ_T0015588.1 MGP_AJ_G0013683.1 mouse_genomes_project 6 122689017 122689364 + processed_pseudogene processed_pseudogene MGP_AJ_T0080561.1 MGP_AJ_G0031332.1 mouse_genomes_project 6 128412666 128442100 - MGP_AJ_P0080561 Klra17 protein_coding protein_coding MGP_AJ_T0080562.1 MGP_AJ_G0031332.1 mouse_genomes_project 6 128412676 128442102 - MGP_AJ_P0080562 Klra17 protein_coding protein_coding MGP_AJ_T0078020.1 MGP_AJ_G0030820.1 mouse_genomes_project 6 68621095 68626936 - MGP_AJ_P0078020 Tex37 protein_coding protein_coding MGP_AJ_T0004970.1 MGP_AJ_G0004263.1 mouse_genomes_project 6 69255576 69256499 - 1700040L08Rik antisense antisense MGP_AJ_T0000197.1 MGP_AJ_G0000148.1 mouse_genomes_project 6 67672108 67672668 - MGP_AJ_P0000197 Igkv8-30 IG_V_gene IG_V_gene MGP_AJ_T0015469.1 MGP_AJ_G0013564.1 mouse_genomes_project 6 82933518 82934096 + processed_pseudogene processed_pseudogene MGP_AJ_T0076448.1 MGP_AJ_G0030441.1 mouse_genomes_project 6 13931154 13939084 + MGP_AJ_P0076448 Cav2 protein_coding protein_coding MGP_AJ_T0076449.1 MGP_AJ_G0030441.1 mouse_genomes_project 6 13931296 13932654 + MGP_AJ_P0076449 Cav2 protein_coding protein_coding MGP_AJ_T0076450.1 MGP_AJ_G0030441.1 mouse_genomes_project 6 13931328 13937408 + MGP_AJ_P0076450 Cav2 protein_coding protein_coding MGP_AJ_T0002115.1 MGP_AJ_G0002028.1 mouse_genomes_project 6 110155609 110156165 - TEC TEC MGP_AJ_T0002157.1 MGP_AJ_G0002069.1 mouse_genomes_project 6 133081136 133081832 - TEC TEC MGP_AJ_T0015364.1 MGP_AJ_G0013459.1 mouse_genomes_project 6 55886917 55887163 - processed_pseudogene processed_pseudogene MGP_AJ_T0002101.1 MGP_AJ_G0002014.1 mouse_genomes_project 6 99032534 99033141 - TEC TEC MGP_AJ_T0015265.1 MGP_AJ_G0013360.1 mouse_genomes_project 6 15461749 15462257 + processed_pseudogene processed_pseudogene MGP_AJ_T0008742.1 MGP_AJ_G0007065.1 mouse_genomes_project 6 126400111 126403745 - Gm42810 lincRNA lincRNA MGP_AJ_T0002122.1 MGP_AJ_G0002035.1 mouse_genomes_project 6 111798776 111799471 + TEC TEC MGP_AJ_T0078265.1 MGP_AJ_G0030871.1 mouse_genomes_project 6 79735330 79743410 - MGP_AJ_P0078265 Mrpl19 protein_coding protein_coding MGP_AJ_T0078266.1 MGP_AJ_G0030871.1 mouse_genomes_project 6 79739401 79740275 - Mrpl19 protein_coding retained_intron MGP_AJ_T0078267.1 MGP_AJ_G0030871.1 mouse_genomes_project 6 79739838 79743059 - Mrpl19 protein_coding processed_transcript MGP_AJ_T0076366.1 MGP_AJ_G0030427.1 mouse_genomes_project 6 8572812 8579814 - MGP_AJ_P0076366 Ndufa4 protein_coding protein_coding MGP_AJ_T0076367.1 MGP_AJ_G0030427.1 mouse_genomes_project 6 8572821 8579878 - Ndufa4 protein_coding retained_intron MGP_AJ_T0079705.1 MGP_AJ_G0031151.1 mouse_genomes_project 6 116121566 116202203 + MGP_AJ_P0079705 Rasgef1a protein_coding protein_coding MGP_AJ_T0079706.1 MGP_AJ_G0031151.1 mouse_genomes_project 6 116177079 116201157 + MGP_AJ_P0079706 Rasgef1a protein_coding protein_coding MGP_AJ_T0079707.1 MGP_AJ_G0031151.1 mouse_genomes_project 6 116177079 116201228 + MGP_AJ_P0079707 Rasgef1a protein_coding protein_coding MGP_AJ_T0076545.1 MGP_AJ_G0030456.1 mouse_genomes_project 6 18971839 18977192 + MGP_AJ_P0076545 Wnt16 protein_coding protein_coding MGP_AJ_T0076546.1 MGP_AJ_G0030456.1 mouse_genomes_project 6 18971842 18982125 + MGP_AJ_P0076546 Wnt16 protein_coding protein_coding MGP_AJ_T0076547.1 MGP_AJ_G0030456.1 mouse_genomes_project 6 18971900 18978198 + MGP_AJ_P0076547 Wnt16 protein_coding protein_coding MGP_AJ_T0076548.1 MGP_AJ_G0030456.1 mouse_genomes_project 6 18972473 18981430 + MGP_AJ_P0076548 Wnt16 protein_coding protein_coding MGP_AJ_T0015488.1 MGP_AJ_G0013583.1 mouse_genomes_project 6 91737956 91738829 - processed_pseudogene processed_pseudogene MGP_AJ_T0011669.1 MGP_AJ_G0009791.1 mouse_genomes_project 6 120964368 120964480 + Gm26168 misc_RNA misc_RNA MGP_AJ_T0077904.1 MGP_AJ_G0030791.1 mouse_genomes_project 6 57852167 57861851 - MGP_AJ_P0077904 Mageb16 protein_coding protein_coding MGP_AJ_T0078736.1 MGP_AJ_G0030962.1 mouse_genomes_project 6 85652234 85655406 + Efcc1 protein_coding retained_intron MGP_AJ_T0078737.1 MGP_AJ_G0030962.1 mouse_genomes_project 6 85652234 85677011 + MGP_AJ_P0078737 Efcc1 protein_coding protein_coding MGP_AJ_T0078738.1 MGP_AJ_G0030962.1 mouse_genomes_project 6 85652258 85677467 + MGP_AJ_P0078738 Efcc1 protein_coding protein_coding MGP_AJ_T0078739.1 MGP_AJ_G0030962.1 mouse_genomes_project 6 85654174 85673460 + Efcc1 protein_coding processed_transcript MGP_AJ_T0078740.1 MGP_AJ_G0030962.1 mouse_genomes_project 6 85675081 85676322 + Efcc1 protein_coding retained_intron MGP_AJ_T0080009.1 MGP_AJ_G0031209.1 mouse_genomes_project 6 121433921 121450993 + MGP_AJ_P0080009 Clec4a2 protein_coding protein_coding MGP_AJ_T0080010.1 MGP_AJ_G0031209.1 mouse_genomes_project 6 121450011 121455299 + MGP_AJ_P0080010 Clec4a2 protein_coding protein_coding MGP_AJ_T0080011.1 MGP_AJ_G0031209.1 mouse_genomes_project 6 121450013 121465301 + MGP_AJ_P0080011 Clec4a2 protein_coding protein_coding MGP_AJ_T0080012.1 MGP_AJ_G0031209.1 mouse_genomes_project 6 121450639 121466762 + MGP_AJ_P0080012 Clec4a2 protein_coding protein_coding MGP_AJ_T0080013.1 MGP_AJ_G0031209.1 mouse_genomes_project 6 121450790 121465643 + MGP_AJ_P0080013 Clec4a2 protein_coding protein_coding MGP_AJ_T0078847.1 MGP_AJ_G0030981.1 mouse_genomes_project 6 86787783 86788946 - Podxl2 protein_coding processed_transcript MGP_AJ_T0078848.1 MGP_AJ_G0030981.1 mouse_genomes_project 6 86787992 86821602 - MGP_AJ_P0078848 Podxl2 protein_coding protein_coding MGP_AJ_T0078849.1 MGP_AJ_G0030981.1 mouse_genomes_project 6 86788763 86791208 - Podxl2 protein_coding retained_intron MGP_AJ_T0078850.1 MGP_AJ_G0030981.1 mouse_genomes_project 6 86789401 86794659 - Podxl2 protein_coding processed_transcript MGP_AJ_T0078851.1 MGP_AJ_G0030981.1 mouse_genomes_project 6 86792249 86794125 - Podxl2 protein_coding retained_intron MGP_AJ_T0078852.1 MGP_AJ_G0030981.1 mouse_genomes_project 6 86794960 86821361 - MGP_AJ_P0078852 Podxl2 protein_coding protein_coding MGP_AJ_T0078853.1 MGP_AJ_G0030981.1 mouse_genomes_project 6 86794960 86821419 - MGP_AJ_P0078853 Podxl2 protein_coding protein_coding MGP_AJ_T0078854.1 MGP_AJ_G0030981.1 mouse_genomes_project 6 86795095 86811766 - Podxl2 protein_coding processed_transcript MGP_AJ_T0078855.1 MGP_AJ_G0030981.1 mouse_genomes_project 6 86810775 86821612 - Podxl2 protein_coding retained_intron MGP_AJ_T0078856.1 MGP_AJ_G0030981.1 mouse_genomes_project 6 86811310 86821000 - Podxl2 protein_coding retained_intron MGP_AJ_T0015572.1 MGP_AJ_G0013667.1 mouse_genomes_project 6 120367340 120367472 + processed_pseudogene processed_pseudogene MGP_AJ_T0004901.1 MGP_AJ_G0004211.1 mouse_genomes_project 6 13709357 13816726 - Gm4876 antisense antisense MGP_AJ_T0004902.1 MGP_AJ_G0004211.1 mouse_genomes_project 6 13720608 13817070 - Gm4876 antisense antisense MGP_AJ_T0004903.1 MGP_AJ_G0004211.1 mouse_genomes_project 6 13741349 13816702 - Gm4876 antisense antisense MGP_AJ_T0004904.1 MGP_AJ_G0004211.1 mouse_genomes_project 6 13754410 13816854 - Gm4876 antisense antisense MGP_AJ_T0004905.1 MGP_AJ_G0004211.1 mouse_genomes_project 6 13807349 13816983 - Gm4876 antisense antisense MGP_AJ_T0004906.1 MGP_AJ_G0004211.1 mouse_genomes_project 6 13816625 13817047 - Gm4876 antisense antisense MGP_AJ_T0079958.1 MGP_AJ_G0031195.1 mouse_genomes_project 6 120784847 120803913 - MGP_AJ_P0079958 Rimklb protein_coding nonsense_mediated_decay MGP_AJ_T0079959.1 MGP_AJ_G0031195.1 mouse_genomes_project 6 120784849 120790282 - Rimklb protein_coding processed_transcript MGP_AJ_T0079960.1 MGP_AJ_G0031195.1 mouse_genomes_project 6 120790650 120824547 - MGP_AJ_P0079960 Rimklb protein_coding protein_coding MGP_AJ_T0079961.1 MGP_AJ_G0031195.1 mouse_genomes_project 6 120791809 120803861 - MGP_AJ_P0079961 Rimklb protein_coding protein_coding MGP_AJ_T0079962.1 MGP_AJ_G0031195.1 mouse_genomes_project 6 120796607 120809883 - Rimklb protein_coding processed_transcript MGP_AJ_T0079963.1 MGP_AJ_G0031195.1 mouse_genomes_project 6 120801491 120824481 - MGP_AJ_P0079963 Rimklb protein_coding protein_coding MGP_AJ_T0079964.1 MGP_AJ_G0031195.1 mouse_genomes_project 6 120809866 120836850 - MGP_AJ_P0079964 Rimklb protein_coding protein_coding MGP_AJ_T0004940.1 MGP_AJ_G0004241.1 mouse_genomes_project 6 39101030 39110915 + 2010310C07Rik antisense antisense MGP_AJ_T0004941.1 MGP_AJ_G0004241.1 mouse_genomes_project 6 39108315 39111575 + 2010310C07Rik antisense antisense MGP_AJ_T0015549.1 MGP_AJ_G0013644.1 mouse_genomes_project 6 113196121 113196452 + processed_pseudogene processed_pseudogene MGP_AJ_T0015546.1 MGP_AJ_G0013641.1 mouse_genomes_project 6 112824430 112829156 + processed_pseudogene processed_pseudogene MGP_AJ_T0015563.1 MGP_AJ_G0013658.1 mouse_genomes_project 6 118140772 118141060 + processed_pseudogene processed_pseudogene MGP_AJ_T0076208.1 MGP_AJ_G0030394.1 mouse_genomes_project 6 224127 324110 + MGP_AJ_P0076208 Vps50 protein_coding protein_coding MGP_AJ_T0076209.1 MGP_AJ_G0030394.1 mouse_genomes_project 6 224149 321689 + MGP_AJ_P0076209 Vps50 protein_coding protein_coding MGP_AJ_T0076210.1 MGP_AJ_G0030394.1 mouse_genomes_project 6 224167 323894 + MGP_AJ_P0076210 Vps50 protein_coding protein_coding MGP_AJ_T0076211.1 MGP_AJ_G0030394.1 mouse_genomes_project 6 224171 246774 + Vps50 protein_coding retained_intron MGP_AJ_T0076212.1 MGP_AJ_G0030394.1 mouse_genomes_project 6 243312 259501 + Vps50 protein_coding processed_transcript MGP_AJ_T0076213.1 MGP_AJ_G0030394.1 mouse_genomes_project 6 285806 323894 + Vps50 protein_coding retained_intron MGP_AJ_T0076214.1 MGP_AJ_G0030394.1 mouse_genomes_project 6 297270 323894 + Vps50 protein_coding processed_transcript MGP_AJ_T0076215.1 MGP_AJ_G0030394.1 mouse_genomes_project 6 308653 313660 + Vps50 protein_coding retained_intron MGP_AJ_T0076216.1 MGP_AJ_G0030394.1 mouse_genomes_project 6 314620 320841 + Vps50 protein_coding processed_transcript MGP_AJ_T0077860.1 MGP_AJ_G0030777.1 mouse_genomes_project 6 54751987 54753022 - MGP_AJ_P0077860 Vmn1r21 protein_coding protein_coding MGP_AJ_T0077861.1 MGP_AJ_G0030777.1 mouse_genomes_project 6 54752658 54758876 - MGP_AJ_P0077861 Vmn1r21 protein_coding protein_coding MGP_AJ_T0077862.1 MGP_AJ_G0030777.1 mouse_genomes_project 6 54752665 54758878 - MGP_AJ_P0077862 Vmn1r21 protein_coding protein_coding MGP_AJ_T0015502.1 MGP_AJ_G0013597.1 mouse_genomes_project 6 96945947 96946423 - processed_pseudogene processed_pseudogene MGP_AJ_T0008730.1 MGP_AJ_G0007053.1 mouse_genomes_project 6 118030679 118037159 - 4930540M05Rik lincRNA lincRNA MGP_AJ_T0077969.1 MGP_AJ_G0030805.1 mouse_genomes_project 6 63692360 63693396 - MGP_AJ_P0077969 Vmn1r33 protein_coding protein_coding MGP_AJ_T0102690.1 MGP_AJ_G0040432.1 mouse_genomes_project 6 55218783 55221070 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0077121.1 MGP_AJ_G0030567.1 mouse_genomes_project 6 35859068 35930721 - MGP_AJ_P0077121 Kdm7a protein_coding protein_coding MGP_AJ_T0077122.1 MGP_AJ_G0030567.1 mouse_genomes_project 6 35864650 35877223 - Kdm7a protein_coding processed_transcript MGP_AJ_T0015408.1 MGP_AJ_G0013503.1 mouse_genomes_project 6 64339515 64340238 - processed_pseudogene processed_pseudogene MGP_AJ_T0004957.1 MGP_AJ_G0004251.1 mouse_genomes_project 6 49145542 49152008 - Evx1os antisense antisense MGP_AJ_T0004958.1 MGP_AJ_G0004251.1 mouse_genomes_project 6 49147989 49150681 - Evx1os antisense antisense MGP_AJ_T0080057.1 MGP_AJ_G0031225.1 mouse_genomes_project 6 122883595 123012401 + MGP_AJ_P0080057 C1rl protein_coding protein_coding MGP_AJ_T0002003.1 MGP_AJ_G0001916.1 mouse_genomes_project 6 69177057 69179839 - TEC TEC MGP_AJ_T0002118.1 MGP_AJ_G0002031.1 mouse_genomes_project 6 111377602 111378652 - TEC TEC MGP_AJ_T0008692.1 MGP_AJ_G0007022.1 mouse_genomes_project 6 96602589 96792575 - Gm44196 lincRNA lincRNA MGP_AJ_T0008694.1 MGP_AJ_G0007022.1 mouse_genomes_project 6 96760110 96792594 - Gm44196 lincRNA lincRNA MGP_AJ_T0008695.1 MGP_AJ_G0007022.1 mouse_genomes_project 6 96787864 96792624 - Gm44196 lincRNA lincRNA MGP_AJ_T0002060.1 MGP_AJ_G0001973.1 mouse_genomes_project 6 85729887 85730752 - TEC TEC MGP_AJ_T0076508.1 MGP_AJ_G0030449.1 mouse_genomes_project 6 15020410 15081353 - Cttnbp2 protein_coding retained_intron MGP_AJ_T0076509.1 MGP_AJ_G0030449.1 mouse_genomes_project 6 15020639 15170136 - MGP_AJ_P0076509 Cttnbp2 protein_coding nonsense_mediated_decay MGP_AJ_T0076510.1 MGP_AJ_G0030449.1 mouse_genomes_project 6 15021153 15170208 - MGP_AJ_P0076510 Cttnbp2 protein_coding protein_coding MGP_AJ_T0076511.1 MGP_AJ_G0030449.1 mouse_genomes_project 6 15042894 15060840 - MGP_AJ_P0076511 Cttnbp2 protein_coding protein_coding MGP_AJ_T0076512.1 MGP_AJ_G0030449.1 mouse_genomes_project 6 15085082 15170186 - Cttnbp2 protein_coding retained_intron MGP_AJ_T0076513.1 MGP_AJ_G0030449.1 mouse_genomes_project 6 15088393 15168490 - MGP_AJ_P0076513 Cttnbp2 protein_coding protein_coding MGP_AJ_T0076514.1 MGP_AJ_G0030449.1 mouse_genomes_project 6 15101516 15156854 - MGP_AJ_P0076514 Cttnbp2 protein_coding protein_coding MGP_AJ_T0076515.1 MGP_AJ_G0030449.1 mouse_genomes_project 6 15156423 15170230 - Cttnbp2 protein_coding retained_intron MGP_AJ_T0080820.1 MGP_AJ_G0031415.1 mouse_genomes_project 6 137085619 137102336 + MGP_AJ_P0080820 Mgst1 protein_coding protein_coding MGP_AJ_T0080821.1 MGP_AJ_G0031415.1 mouse_genomes_project 6 137085831 137102186 + MGP_AJ_P0080821 Mgst1 protein_coding protein_coding MGP_AJ_T0080822.1 MGP_AJ_G0031415.1 mouse_genomes_project 6 137085857 137101973 + MGP_AJ_P0080822 Mgst1 protein_coding protein_coding MGP_AJ_T0080823.1 MGP_AJ_G0031415.1 mouse_genomes_project 6 137085874 137102323 + MGP_AJ_P0080823 Mgst1 protein_coding protein_coding MGP_AJ_T0080824.1 MGP_AJ_G0031415.1 mouse_genomes_project 6 137085902 137101965 + MGP_AJ_P0080824 Mgst1 protein_coding protein_coding MGP_AJ_T0080825.1 MGP_AJ_G0031415.1 mouse_genomes_project 6 137086673 137102140 + MGP_AJ_P0080825 Mgst1 protein_coding protein_coding MGP_AJ_T0080826.1 MGP_AJ_G0031415.1 mouse_genomes_project 6 137086889 137102193 + MGP_AJ_P0080826 Mgst1 protein_coding protein_coding MGP_AJ_T0080827.1 MGP_AJ_G0031415.1 mouse_genomes_project 6 137088157 137096501 + MGP_AJ_P0080827 Mgst1 protein_coding protein_coding MGP_AJ_T0015527.1 MGP_AJ_G0013622.1 mouse_genomes_project 6 107195260 107195738 + processed_pseudogene processed_pseudogene MGP_AJ_T0099077.1 MGP_AJ_G0037050.1 mouse_genomes_project 6 97464960 97468853 - Gm20705 sense_intronic sense_intronic MGP_AJ_T0080533.1 MGP_AJ_G0031322.1 mouse_genomes_project 6 128108119 128117139 + MGP_AJ_P0080533 Gabarapl1 protein_coding protein_coding MGP_AJ_T0015623.1 MGP_AJ_G0013718.1 mouse_genomes_project 6 129802586 129805787 + processed_pseudogene processed_pseudogene MGP_AJ_T0008564.1 MGP_AJ_G0006927.1 mouse_genomes_project 6 29429038 29429697 - BC049739 lincRNA lincRNA MGP_AJ_T0078664.1 MGP_AJ_G0030946.1 mouse_genomes_project 6 84553264 84575034 - MGP_AJ_P0078664 Mxd1 protein_coding protein_coding MGP_AJ_T0078665.1 MGP_AJ_G0030946.1 mouse_genomes_project 6 84555238 84568985 - MGP_AJ_P0078665 Mxd1 protein_coding protein_coding MGP_AJ_T0078666.1 MGP_AJ_G0030946.1 mouse_genomes_project 6 84557022 84574973 - MGP_AJ_P0078666 Mxd1 protein_coding nonsense_mediated_decay MGP_AJ_T0078667.1 MGP_AJ_G0030946.1 mouse_genomes_project 6 84572073 84574990 - Mxd1 protein_coding retained_intron MGP_AJ_T0011622.1 MGP_AJ_G0009744.1 mouse_genomes_project 6 7543299 7543391 + Gm27894 misc_RNA misc_RNA MGP_AJ_T0080908.1 MGP_AJ_G0031432.1 mouse_genomes_project 6 140978536 141019331 - MGP_AJ_P0080908 Gm6614 protein_coding protein_coding MGP_AJ_T0080909.1 MGP_AJ_G0031432.1 mouse_genomes_project 6 140978536 141019298 - MGP_AJ_P0080909 Gm6614 protein_coding protein_coding MGP_AJ_T0080910.1 MGP_AJ_G0031432.1 mouse_genomes_project 6 140978943 141016629 - MGP_AJ_P0080910 Gm6614 protein_coding protein_coding MGP_AJ_T0078986.1 MGP_AJ_G0031013.1 mouse_genomes_project 6 89416900 89463723 - MGP_AJ_P0078986 Wnt7a protein_coding protein_coding MGP_AJ_T0078987.1 MGP_AJ_G0031013.1 mouse_genomes_project 6 89416902 89418017 - Wnt7a protein_coding processed_transcript MGP_AJ_T0078988.1 MGP_AJ_G0031013.1 mouse_genomes_project 6 89416904 89417991 - Wnt7a protein_coding processed_transcript MGP_AJ_T0015389.1 MGP_AJ_G0013484.1 mouse_genomes_project 6 62350201 62350611 - processed_pseudogene processed_pseudogene MGP_AJ_T0008774.1 MGP_AJ_G0007086.1 mouse_genomes_project 6 142009668 142010055 + 4930434O05Rik lincRNA lincRNA MGP_AJ_T0080499.1 MGP_AJ_G0031311.1 mouse_genomes_project 6 127665200 127673982 - MGP_AJ_P0080499 Clec2e protein_coding protein_coding MGP_AJ_T0015421.1 MGP_AJ_G0013516.1 mouse_genomes_project 6 65529128 65529419 - processed_pseudogene processed_pseudogene MGP_AJ_T0008735.1 MGP_AJ_G0007058.1 mouse_genomes_project 6 122750385 122751604 - 1700027F06Rik lincRNA lincRNA MGP_AJ_T0076733.1 MGP_AJ_G0030501.1 mouse_genomes_project 6 26182723 26251823 - MGP_AJ_P0076733 Tnpo3 protein_coding protein_coding MGP_AJ_T0076734.1 MGP_AJ_G0030501.1 mouse_genomes_project 6 26182723 26252103 - MGP_AJ_P0076734 Tnpo3 protein_coding protein_coding MGP_AJ_T0076735.1 MGP_AJ_G0030501.1 mouse_genomes_project 6 26182779 26201883 - MGP_AJ_P0076735 Tnpo3 protein_coding protein_coding MGP_AJ_T0076737.1 MGP_AJ_G0030501.1 mouse_genomes_project 6 26183367 26252027 - MGP_AJ_P0076737 Tnpo3 protein_coding nonsense_mediated_decay MGP_AJ_T0076738.1 MGP_AJ_G0030501.1 mouse_genomes_project 6 26196671 26198854 - Tnpo3 protein_coding retained_intron MGP_AJ_T0076739.1 MGP_AJ_G0030501.1 mouse_genomes_project 6 26206665 26251839 - Tnpo3 protein_coding retained_intron MGP_AJ_T0076740.1 MGP_AJ_G0030501.1 mouse_genomes_project 6 26210215 26213301 - Tnpo3 protein_coding retained_intron MGP_AJ_T0076741.1 MGP_AJ_G0030501.1 mouse_genomes_project 6 26220236 26224047 - Tnpo3 protein_coding retained_intron MGP_AJ_T0076742.1 MGP_AJ_G0030501.1 mouse_genomes_project 6 26221737 26252035 - Tnpo3 protein_coding retained_intron MGP_AJ_T0076743.1 MGP_AJ_G0030501.1 mouse_genomes_project 6 26225003 26251850 - Tnpo3 protein_coding retained_intron MGP_AJ_T0076744.1 MGP_AJ_G0030501.1 mouse_genomes_project 6 26230748 26251829 - Tnpo3 protein_coding processed_transcript MGP_AJ_T0098707.1 MGP_AJ_G0036691.1 mouse_genomes_project 6 27042280 27042394 + n-R5s161 rRNA rRNA MGP_AJ_T0015425.1 MGP_AJ_G0013520.1 mouse_genomes_project 6 66039918 66040399 - processed_pseudogene processed_pseudogene MGP_AJ_T0008691.1 MGP_AJ_G0007021.1 mouse_genomes_project 6 93055319 93062989 + 4930511E03Rik lincRNA lincRNA MGP_AJ_T0101379.1 MGP_AJ_G0039345.1 mouse_genomes_project 6 122107643 122107770 - Gm22724 snoRNA snoRNA MGP_AJ_T0008563.1 MGP_AJ_G0006926.1 mouse_genomes_project 6 28778330 28779414 + Gm13850 lincRNA lincRNA MGP_AJ_T0079568.1 MGP_AJ_G0031126.1 mouse_genomes_project 6 113911183 113934459 - MGP_AJ_P0079568 Efcab12 protein_coding protein_coding MGP_AJ_T0079569.1 MGP_AJ_G0031126.1 mouse_genomes_project 6 113911350 113934459 - MGP_AJ_P0079569 Efcab12 protein_coding protein_coding MGP_AJ_T0079570.1 MGP_AJ_G0031126.1 mouse_genomes_project 6 113911350 113934459 - MGP_AJ_P0079570 Efcab12 protein_coding nonsense_mediated_decay MGP_AJ_T0005129.1 MGP_AJ_G0004376.1 mouse_genomes_project 6 147347893 147351214 + Gm44020 antisense antisense MGP_AJ_T0015657.1 MGP_AJ_G0013752.1 mouse_genomes_project 6 138997016 138997522 - processed_pseudogene processed_pseudogene MGP_AJ_T0079247.1 MGP_AJ_G0031067.1 mouse_genomes_project 6 106134727 106146728 + MGP_AJ_P0079247 Setmar protein_coding protein_coding MGP_AJ_T0079248.1 MGP_AJ_G0031067.1 mouse_genomes_project 6 106134744 106146728 + MGP_AJ_P0079248 Setmar protein_coding nonsense_mediated_decay MGP_AJ_T0101851.1 MGP_AJ_G0039741.1 mouse_genomes_project 6 98345835 98346867 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0101852.1 MGP_AJ_G0039741.1 mouse_genomes_project 6 98346738 98348952 + transcribed_processed_pseudogene processed_transcript MGP_AJ_T0015407.1 MGP_AJ_G0013502.1 mouse_genomes_project 6 64301920 64302563 - processed_pseudogene processed_pseudogene MGP_AJ_T0102736.1 MGP_AJ_G0040477.1 mouse_genomes_project 6 132120840 132122923 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0000202.1 MGP_AJ_G0000152.1 mouse_genomes_project 6 67818946 67819510 - MGP_AJ_P0000202 Igkv8-24 IG_V_gene IG_V_gene MGP_AJ_T0077842.1 MGP_AJ_G0030772.1 mouse_genomes_project 6 54416884 54445833 - MGP_AJ_P0077842 Ppm1k protein_coding protein_coding MGP_AJ_T0077843.1 MGP_AJ_G0030772.1 mouse_genomes_project 6 54423286 54425297 - MGP_AJ_P0077843 Ppm1k protein_coding protein_coding MGP_AJ_T0077844.1 MGP_AJ_G0030772.1 mouse_genomes_project 6 54444841 54445875 - Ppm1k protein_coding processed_transcript MGP_AJ_T0079198.1 MGP_AJ_G0031057.1 mouse_genomes_project 6 98943103 98978775 + MGP_AJ_P0079198 Ppp4r2 protein_coding protein_coding MGP_AJ_T0079199.1 MGP_AJ_G0031057.1 mouse_genomes_project 6 98961943 98975558 + Ppp4r2 protein_coding retained_intron MGP_AJ_T0079200.1 MGP_AJ_G0031057.1 mouse_genomes_project 6 98961994 98975647 + MGP_AJ_P0079200 Ppp4r2 protein_coding protein_coding MGP_AJ_T0015630.1 MGP_AJ_G0013725.1 mouse_genomes_project 6 130746504 130746985 - processed_pseudogene processed_pseudogene MGP_AJ_T0078126.1 MGP_AJ_G0030842.1 mouse_genomes_project 6 70077549 70080482 + MGP_AJ_P0078126 Tmem150a protein_coding protein_coding MGP_AJ_T0078127.1 MGP_AJ_G0030842.1 mouse_genomes_project 6 70078209 70081382 + Tmem150a protein_coding processed_transcript MGP_AJ_T0078128.1 MGP_AJ_G0030842.1 mouse_genomes_project 6 70078306 70080833 + MGP_AJ_P0078128 Tmem150a protein_coding protein_coding MGP_AJ_T0078129.1 MGP_AJ_G0030842.1 mouse_genomes_project 6 70078328 70081782 + MGP_AJ_P0078129 Tmem150a protein_coding protein_coding MGP_AJ_T0079092.1 MGP_AJ_G0031035.1 mouse_genomes_project 6 93223311 93227954 + MGP_AJ_P0079092 Kbtbd8 protein_coding protein_coding MGP_AJ_T0079093.1 MGP_AJ_G0031035.1 mouse_genomes_project 6 93223980 93233007 + MGP_AJ_P0079093 Kbtbd8 protein_coding protein_coding MGP_AJ_T0079094.1 MGP_AJ_G0031035.1 mouse_genomes_project 6 93224054 93227861 + Kbtbd8 protein_coding processed_transcript MGP_AJ_T0002133.1 MGP_AJ_G0002045.1 mouse_genomes_project 6 119070354 119072444 - TEC TEC MGP_AJ_T0004932.1 MGP_AJ_G0004234.1 mouse_genomes_project 6 35839505 35870853 + 4930599N23Rik antisense antisense MGP_AJ_T0078557.1 MGP_AJ_G0030925.1 mouse_genomes_project 6 83339611 83373484 - MGP_AJ_P0078557 Fbxo41 protein_coding protein_coding MGP_AJ_T0078558.1 MGP_AJ_G0030925.1 mouse_genomes_project 6 83339615 83373376 - MGP_AJ_P0078558 Fbxo41 protein_coding protein_coding MGP_AJ_T0078559.1 MGP_AJ_G0030925.1 mouse_genomes_project 6 83339617 83373348 - MGP_AJ_P0078559 Fbxo41 protein_coding protein_coding MGP_AJ_T0000209.1 MGP_AJ_G0000156.1 mouse_genomes_project 6 68000684 68001265 - MGP_AJ_P0000209 Igkv8-16 IG_V_gene IG_V_gene MGP_AJ_T0000211.1 MGP_AJ_G0000156.1 mouse_genomes_project 6 68000684 68001251 - MGP_AJ_P0000211 Igkv8-16 IG_V_gene IG_V_gene MGP_AJ_T0008684.1 MGP_AJ_G0007015.1 mouse_genomes_project 6 88510456 88511677 + Gm44421 lincRNA lincRNA MGP_AJ_T0015601.1 MGP_AJ_G0013696.1 mouse_genomes_project 6 125891966 125892499 - processed_pseudogene processed_pseudogene MGP_AJ_T0078588.1 MGP_AJ_G0030934.1 mouse_genomes_project 6 83834029 83853279 - MGP_AJ_P0078588 Dusp11 protein_coding protein_coding MGP_AJ_T0078589.1 MGP_AJ_G0030934.1 mouse_genomes_project 6 83839509 83850902 - MGP_AJ_P0078589 Dusp11 protein_coding nonsense_mediated_decay MGP_AJ_T0078590.1 MGP_AJ_G0030934.1 mouse_genomes_project 6 83841427 83842601 - Dusp11 protein_coding retained_intron MGP_AJ_T0078591.1 MGP_AJ_G0030934.1 mouse_genomes_project 6 83841432 83845660 - Dusp11 protein_coding processed_transcript MGP_AJ_T0078592.1 MGP_AJ_G0030934.1 mouse_genomes_project 6 83841755 83845544 - Dusp11 protein_coding retained_intron MGP_AJ_T0078593.1 MGP_AJ_G0030934.1 mouse_genomes_project 6 83846679 83853279 - Dusp11 protein_coding processed_transcript MGP_AJ_T0078594.1 MGP_AJ_G0030934.1 mouse_genomes_project 6 83846781 83853219 - Dusp11 protein_coding processed_transcript MGP_AJ_T0078595.1 MGP_AJ_G0030934.1 mouse_genomes_project 6 83851931 83853254 - Dusp11 protein_coding retained_intron MGP_AJ_T0000132.1 MGP_AJ_G0000100.1 mouse_genomes_project 6 64647148 64647868 + MGP_AJ_P0000132 IG_V_gene IG_V_gene MGP_AJ_T0015641.1 MGP_AJ_G0013736.1 mouse_genomes_project 6 131673662 131674088 + processed_pseudogene processed_pseudogene MGP_AJ_T0001958.1 MGP_AJ_G0001871.1 mouse_genomes_project 6 41824534 41825763 + TEC TEC MGP_AJ_T0079438.1 MGP_AJ_G0031100.1 mouse_genomes_project 6 111675072 111679027 - MGP_AJ_P0079438 Fancd2os protein_coding nonsense_mediated_decay MGP_AJ_T0079439.1 MGP_AJ_G0031100.1 mouse_genomes_project 6 111675073 111679027 - MGP_AJ_P0079439 Fancd2os protein_coding protein_coding MGP_AJ_T0000275.1 MGP_AJ_G0000219.1 mouse_genomes_project 6 65270750 65271216 + IG_V_pseudogene IG_V_pseudogene MGP_AJ_T0015426.1 MGP_AJ_G0013521.1 mouse_genomes_project 6 66234471 66234923 + processed_pseudogene processed_pseudogene MGP_AJ_T0015339.1 MGP_AJ_G0013434.1 mouse_genomes_project 6 45969041 45969243 + processed_pseudogene processed_pseudogene MGP_AJ_T0080031.1 MGP_AJ_G0031214.1 mouse_genomes_project 6 121624176 121654864 + MGP_AJ_P0080031 Vmn2r19 protein_coding protein_coding MGP_AJ_T0008640.1 MGP_AJ_G0006982.1 mouse_genomes_project 6 69065374 69071853 - Gm44175 lincRNA lincRNA MGP_AJ_T0018318.1 MGP_AJ_G0015628.1 mouse_genomes_project 6 141825149 141844417 + Gm7457 processed_transcript antisense MGP_AJ_T0018319.1 MGP_AJ_G0015628.1 mouse_genomes_project 6 141825303 141827878 + Gm7457 processed_transcript retained_intron MGP_AJ_T0008636.1 MGP_AJ_G0006978.1 mouse_genomes_project 6 68875247 68876529 + Gm44427 lincRNA lincRNA MGP_AJ_T0076331.1 MGP_AJ_G0030420.1 mouse_genomes_project 6 4963280 4990331 + MGP_AJ_P0076331 Mios protein_coding protein_coding MGP_AJ_T0076332.1 MGP_AJ_G0030420.1 mouse_genomes_project 6 4980691 4990325 + Mios protein_coding retained_intron MGP_AJ_T0076333.1 MGP_AJ_G0030420.1 mouse_genomes_project 6 4983561 4990325 + Mios protein_coding retained_intron MGP_AJ_T0076838.1 MGP_AJ_G0030513.1 mouse_genomes_project 6 27236107 27260839 + MGP_AJ_P0076838 Cpa4 protein_coding protein_coding MGP_AJ_T0080175.1 MGP_AJ_G0031246.1 mouse_genomes_project 6 123390562 123397690 - MGP_AJ_P0080175 Lag3 protein_coding protein_coding MGP_AJ_T0080176.1 MGP_AJ_G0031246.1 mouse_genomes_project 6 123394579 123396032 - Lag3 protein_coding processed_transcript MGP_AJ_T0081227.1 MGP_AJ_G0031486.1 mouse_genomes_project 6 148315856 148333107 + MGP_AJ_P0081227 2810474O19Rik protein_coding protein_coding MGP_AJ_T0081228.1 MGP_AJ_G0031486.1 mouse_genomes_project 6 148315870 148342087 + MGP_AJ_P0081228 2810474O19Rik protein_coding protein_coding MGP_AJ_T0081229.1 MGP_AJ_G0031486.1 mouse_genomes_project 6 148315898 148335413 + MGP_AJ_P0081229 2810474O19Rik protein_coding protein_coding MGP_AJ_T0081230.1 MGP_AJ_G0031486.1 mouse_genomes_project 6 148315916 148341354 + MGP_AJ_P0081230 2810474O19Rik protein_coding protein_coding MGP_AJ_T0081231.1 MGP_AJ_G0031486.1 mouse_genomes_project 6 148315916 148341354 + MGP_AJ_P0081231 2810474O19Rik protein_coding protein_coding MGP_AJ_T0081232.1 MGP_AJ_G0031486.1 mouse_genomes_project 6 148316015 148316898 + 2810474O19Rik protein_coding retained_intron MGP_AJ_T0081233.1 MGP_AJ_G0031486.1 mouse_genomes_project 6 148316170 148331925 + MGP_AJ_P0081233 2810474O19Rik protein_coding protein_coding MGP_AJ_T0081234.1 MGP_AJ_G0031486.1 mouse_genomes_project 6 148317858 148320809 + 2810474O19Rik protein_coding retained_intron MGP_AJ_T0081235.1 MGP_AJ_G0031486.1 mouse_genomes_project 6 148323769 148332403 + MGP_AJ_P0081235 2810474O19Rik protein_coding protein_coding MGP_AJ_T0081236.1 MGP_AJ_G0031486.1 mouse_genomes_project 6 148331091 148332209 + MGP_AJ_P0081236 2810474O19Rik protein_coding protein_coding MGP_AJ_T0081237.1 MGP_AJ_G0031486.1 mouse_genomes_project 6 148331893 148342082 + MGP_AJ_P0081237 2810474O19Rik protein_coding protein_coding MGP_AJ_T0001985.1 MGP_AJ_G0001898.1 mouse_genomes_project 6 49414658 49417341 + TEC TEC MGP_AJ_T0011633.1 MGP_AJ_G0009755.1 mouse_genomes_project 6 26798430 26798757 - Gm25580 misc_RNA misc_RNA MGP_AJ_T0077539.1 MGP_AJ_G0030691.1 mouse_genomes_project 6 45866464 45879711 + MGP_AJ_P0077539 Malsu1 protein_coding protein_coding MGP_AJ_T0077540.1 MGP_AJ_G0030691.1 mouse_genomes_project 6 45866517 45879711 + MGP_AJ_P0077540 Malsu1 protein_coding nonsense_mediated_decay MGP_AJ_T0077541.1 MGP_AJ_G0030691.1 mouse_genomes_project 6 45866561 45872832 + Malsu1 protein_coding processed_transcript MGP_AJ_T0077542.1 MGP_AJ_G0030691.1 mouse_genomes_project 6 45866743 45876458 + Malsu1 protein_coding processed_transcript MGP_AJ_T0077543.1 MGP_AJ_G0030691.1 mouse_genomes_project 6 45875508 45877638 + Malsu1 protein_coding retained_intron MGP_AJ_T0080417.1 MGP_AJ_G0031292.1 mouse_genomes_project 6 126900218 126906036 - MGP_AJ_P0080417 protein_coding protein_coding MGP_AJ_T0080418.1 MGP_AJ_G0031292.1 mouse_genomes_project 6 126900578 126906092 - MGP_AJ_P0080418 protein_coding protein_coding MGP_AJ_T0080419.1 MGP_AJ_G0031292.1 mouse_genomes_project 6 126900583 126906092 - MGP_AJ_P0080419 protein_coding protein_coding MGP_AJ_T0080420.1 MGP_AJ_G0031292.1 mouse_genomes_project 6 126901189 126905802 - MGP_AJ_P0080420 protein_coding protein_coding MGP_AJ_T0080421.1 MGP_AJ_G0031292.1 mouse_genomes_project 6 126902448 126905919 - MGP_AJ_P0080421 protein_coding protein_coding MGP_AJ_T0080422.1 MGP_AJ_G0031292.1 mouse_genomes_project 6 126905103 126906135 - protein_coding processed_transcript MGP_AJ_T0001947.1 MGP_AJ_G0001860.1 mouse_genomes_project 6 30129545 30131157 + TEC TEC MGP_AJ_T0076468.1 MGP_AJ_G0030444.1 mouse_genomes_project 6 14285710 14305920 + Capza2 protein_coding processed_transcript MGP_AJ_T0076469.1 MGP_AJ_G0030444.1 mouse_genomes_project 6 14286458 14317206 + MGP_AJ_P0076469 Capza2 protein_coding protein_coding MGP_AJ_T0076470.1 MGP_AJ_G0030444.1 mouse_genomes_project 6 14286510 14309793 + Capza2 protein_coding retained_intron MGP_AJ_T0076471.1 MGP_AJ_G0030444.1 mouse_genomes_project 6 14286517 14305870 + Capza2 protein_coding processed_transcript MGP_AJ_T0076472.1 MGP_AJ_G0030444.1 mouse_genomes_project 6 14286585 14315824 + MGP_AJ_P0076472 Capza2 protein_coding nonsense_mediated_decay MGP_AJ_T0076473.1 MGP_AJ_G0030444.1 mouse_genomes_project 6 14286588 14310994 + MGP_AJ_P0076473 Capza2 protein_coding protein_coding MGP_AJ_T0076474.1 MGP_AJ_G0030444.1 mouse_genomes_project 6 14310789 14315920 + Capza2 protein_coding retained_intron MGP_AJ_T0010752.1 MGP_AJ_G0008874.1 mouse_genomes_project 6 26824442 26824548 - Mir96 miRNA miRNA MGP_AJ_T0000183.1 MGP_AJ_G0000139.1 mouse_genomes_project 6 67283542 67284137 - MGP_AJ_P0000183 IG_V_gene IG_V_gene MGP_AJ_T0079529.1 MGP_AJ_G0031116.1 mouse_genomes_project 6 113327129 113337442 - MGP_AJ_P0079529 Timp4 protein_coding protein_coding MGP_AJ_T0079530.1 MGP_AJ_G0031116.1 mouse_genomes_project 6 113332069 113337086 - MGP_AJ_P0079530 Timp4 protein_coding protein_coding MGP_AJ_T0015485.1 MGP_AJ_G0013580.1 mouse_genomes_project 6 90352509 90352985 - processed_pseudogene processed_pseudogene MGP_AJ_T0079940.1 MGP_AJ_G0031193.1 mouse_genomes_project 6 120638022 120645528 + MGP_AJ_P0079940 M6pr protein_coding unknown_likely_coding MGP_AJ_T0079941.1 MGP_AJ_G0031193.1 mouse_genomes_project 6 120638064 120645597 + M6pr protein_coding retained_intron MGP_AJ_T0078049.1 MGP_AJ_G0030830.1 mouse_genomes_project 6 69256236 69273598 + Chmp3 protein_coding processed_transcript MGP_AJ_T0078050.1 MGP_AJ_G0030830.1 mouse_genomes_project 6 69256313 69291232 + MGP_AJ_P0078050 Chmp3 protein_coding protein_coding MGP_AJ_T0078051.1 MGP_AJ_G0030830.1 mouse_genomes_project 6 69256313 69273617 + MGP_AJ_P0078051 Chmp3 protein_coding nonsense_mediated_decay MGP_AJ_T0078052.1 MGP_AJ_G0030830.1 mouse_genomes_project 6 69256373 69295024 + MGP_AJ_P0078052 Chmp3 protein_coding protein_coding MGP_AJ_T0078053.1 MGP_AJ_G0030830.1 mouse_genomes_project 6 69256737 69287567 + Chmp3 protein_coding processed_transcript MGP_AJ_T0078054.1 MGP_AJ_G0030830.1 mouse_genomes_project 6 69291028 69293259 + Chmp3 protein_coding retained_intron MGP_AJ_T0080248.1 MGP_AJ_G0031256.1 mouse_genomes_project 6 123616352 123629366 + MGP_AJ_P0080248 Nop2 protein_coding protein_coding MGP_AJ_T0080249.1 MGP_AJ_G0031256.1 mouse_genomes_project 6 123616490 123619225 + MGP_AJ_P0080249 Nop2 protein_coding protein_coding MGP_AJ_T0008790.1 MGP_AJ_G0007097.1 mouse_genomes_project 6 146252045 146253312 - Gm15767 lincRNA lincRNA MGP_AJ_T0008791.1 MGP_AJ_G0007097.1 mouse_genomes_project 6 146252241 146253304 - Gm15767 lincRNA lincRNA MGP_AJ_T0080748.1 MGP_AJ_G0031402.1 mouse_genomes_project 6 135665787 135680161 - MGP_AJ_P0080748 Wbp11 protein_coding protein_coding MGP_AJ_T0080749.1 MGP_AJ_G0031402.1 mouse_genomes_project 6 135669032 135673413 - MGP_AJ_P0080749 Wbp11 protein_coding protein_coding MGP_AJ_T0080750.1 MGP_AJ_G0031402.1 mouse_genomes_project 6 135669257 135680064 - MGP_AJ_P0080750 Wbp11 protein_coding nonsense_mediated_decay MGP_AJ_T0080751.1 MGP_AJ_G0031402.1 mouse_genomes_project 6 135671935 135680071 - Wbp11 protein_coding retained_intron MGP_AJ_T0080752.1 MGP_AJ_G0031402.1 mouse_genomes_project 6 135676476 135680063 - Wbp11 protein_coding retained_intron MGP_AJ_T0080753.1 MGP_AJ_G0031402.1 mouse_genomes_project 6 135677226 135678214 - Wbp11 protein_coding retained_intron MGP_AJ_T0080754.1 MGP_AJ_G0031402.1 mouse_genomes_project 6 135677634 135679664 - MGP_AJ_P0080754 Wbp11 protein_coding protein_coding MGP_AJ_T0011667.1 MGP_AJ_G0009789.1 mouse_genomes_project 6 113844077 113844327 - Gm27853 misc_RNA misc_RNA MGP_AJ_T0001972.1 MGP_AJ_G0001885.1 mouse_genomes_project 6 42801222 42805159 + TEC TEC MGP_AJ_T0101357.1 MGP_AJ_G0039323.1 mouse_genomes_project 6 70835862 70836058 - Gm24533 snoRNA snoRNA MGP_AJ_T0076975.1 MGP_AJ_G0030536.1 mouse_genomes_project 6 31554861 31563304 + Tmem140 protein_coding processed_transcript MGP_AJ_T0076976.1 MGP_AJ_G0030536.1 mouse_genomes_project 6 31554861 31566663 + MGP_AJ_P0076976 Tmem140 protein_coding protein_coding MGP_AJ_T0076977.1 MGP_AJ_G0030536.1 mouse_genomes_project 6 31554977 31564330 + MGP_AJ_P0076977 Tmem140 protein_coding protein_coding MGP_AJ_T0076978.1 MGP_AJ_G0030536.1 mouse_genomes_project 6 31558732 31560542 + Tmem140 protein_coding processed_transcript MGP_AJ_T0076979.1 MGP_AJ_G0030536.1 mouse_genomes_project 6 31558764 31564455 + MGP_AJ_P0076979 Tmem140 protein_coding protein_coding MGP_AJ_T0076982.1 MGP_AJ_G0030536.1 mouse_genomes_project 6 31564430 31565272 + Tmem140 protein_coding processed_transcript MGP_AJ_T0077828.1 MGP_AJ_G0030760.1 mouse_genomes_project 6 54026964 54027991 + MGP_AJ_P0077828 Vmn1r11 protein_coding protein_coding MGP_AJ_T0002098.1 MGP_AJ_G0002011.1 mouse_genomes_project 6 98371595 98372685 - TEC TEC MGP_AJ_T0102666.1 MGP_AJ_G0040408.1 mouse_genomes_project 6 35255315 35259192 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0015628.1 MGP_AJ_G0013723.1 mouse_genomes_project 6 130309049 130309162 + processed_pseudogene processed_pseudogene MGP_AJ_T0004899.1 MGP_AJ_G0004209.1 mouse_genomes_project 6 5112630 5122711 - Gm16055 antisense antisense MGP_AJ_T0008624.1 MGP_AJ_G0006968.1 mouse_genomes_project 6 54210115 55574442 - lincRNA lincRNA MGP_AJ_T0100076.1 MGP_AJ_G0038042.1 mouse_genomes_project 6 17796187 17796290 + Gm26373 snRNA snRNA MGP_AJ_T0001955.1 MGP_AJ_G0001868.1 mouse_genomes_project 6 37640366 37641709 - TEC TEC MGP_AJ_T0102729.1 MGP_AJ_G0040470.1 mouse_genomes_project 6 131504061 131504964 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0002026.1 MGP_AJ_G0001939.1 mouse_genomes_project 6 75468021 75472053 - TEC TEC MGP_AJ_T0008559.1 MGP_AJ_G0006923.1 mouse_genomes_project 6 28350451 28354361 - lincRNA lincRNA MGP_AJ_T0076701.1 MGP_AJ_G0030495.1 mouse_genomes_project 6 26036983 26040124 + Ccdc136 protein_coding processed_transcript MGP_AJ_T0076702.1 MGP_AJ_G0030495.1 mouse_genomes_project 6 26037304 26067632 + MGP_AJ_P0076702 Ccdc136 protein_coding protein_coding MGP_AJ_T0076703.1 MGP_AJ_G0030495.1 mouse_genomes_project 6 26037317 26067627 + MGP_AJ_P0076703 Ccdc136 protein_coding protein_coding MGP_AJ_T0076704.1 MGP_AJ_G0030495.1 mouse_genomes_project 6 26037359 26067673 + MGP_AJ_P0076704 Ccdc136 protein_coding protein_coding MGP_AJ_T0076705.1 MGP_AJ_G0030495.1 mouse_genomes_project 6 26037359 26067682 + MGP_AJ_P0076705 Ccdc136 protein_coding unknown_likely_coding MGP_AJ_T0076706.1 MGP_AJ_G0030495.1 mouse_genomes_project 6 26039600 26067627 + MGP_AJ_P0076706 Ccdc136 protein_coding protein_coding MGP_AJ_T0076707.1 MGP_AJ_G0030495.1 mouse_genomes_project 6 26039600 26067634 + MGP_AJ_P0076707 Ccdc136 protein_coding protein_coding MGP_AJ_T0076708.1 MGP_AJ_G0030495.1 mouse_genomes_project 6 26043560 26067536 + MGP_AJ_P0076708 Ccdc136 protein_coding protein_coding MGP_AJ_T0076709.1 MGP_AJ_G0030495.1 mouse_genomes_project 6 26050783 26067667 + MGP_AJ_P0076709 Ccdc136 protein_coding protein_coding MGP_AJ_T0076710.1 MGP_AJ_G0030495.1 mouse_genomes_project 6 26053162 26067631 + Ccdc136 protein_coding processed_transcript MGP_AJ_T0076711.1 MGP_AJ_G0030495.1 mouse_genomes_project 6 26055630 26067633 + Ccdc136 protein_coding processed_transcript MGP_AJ_T0010761.1 MGP_AJ_G0008883.1 mouse_genomes_project 6 44556700 44556777 - Mir704 miRNA miRNA MGP_AJ_T0101351.1 MGP_AJ_G0039317.1 mouse_genomes_project 6 64969795 64969931 - Gm24911 snoRNA snoRNA MGP_AJ_T0077840.1 MGP_AJ_G0030770.1 mouse_genomes_project 6 54329542 54330594 + MGP_AJ_P0077840 protein_coding protein_coding MGP_AJ_T0077356.1 MGP_AJ_G0030650.1 mouse_genomes_project 6 40087941 40093822 - MGP_AJ_P0077356 Nobox protein_coding protein_coding MGP_AJ_T0077357.1 MGP_AJ_G0030650.1 mouse_genomes_project 6 40087967 40089403 - Nobox protein_coding processed_transcript MGP_AJ_T0077358.1 MGP_AJ_G0030650.1 mouse_genomes_project 6 40088165 40091504 - MGP_AJ_P0077358 Nobox protein_coding protein_coding MGP_AJ_T0079679.1 MGP_AJ_G0031148.1 mouse_genomes_project 6 115948235 115951738 + Zfp637 protein_coding retained_intron MGP_AJ_T0079680.1 MGP_AJ_G0031148.1 mouse_genomes_project 6 115948235 115952432 + MGP_AJ_P0079680 Zfp637 protein_coding protein_coding MGP_AJ_T0079681.1 MGP_AJ_G0031148.1 mouse_genomes_project 6 115948236 115952739 + MGP_AJ_P0079681 Zfp637 protein_coding protein_coding MGP_AJ_T0079682.1 MGP_AJ_G0031148.1 mouse_genomes_project 6 115948297 115953175 + MGP_AJ_P0079682 Zfp637 protein_coding protein_coding MGP_AJ_T0079683.1 MGP_AJ_G0031148.1 mouse_genomes_project 6 115948301 115953176 + MGP_AJ_P0079683 Zfp637 protein_coding protein_coding MGP_AJ_T0079684.1 MGP_AJ_G0031148.1 mouse_genomes_project 6 115948323 115952633 + MGP_AJ_P0079684 Zfp637 protein_coding protein_coding MGP_AJ_T0079685.1 MGP_AJ_G0031148.1 mouse_genomes_project 6 115948323 115952633 + MGP_AJ_P0079685 Zfp637 protein_coding protein_coding MGP_AJ_T0079686.1 MGP_AJ_G0031148.1 mouse_genomes_project 6 115948336 115953176 + MGP_AJ_P0079686 Zfp637 protein_coding protein_coding MGP_AJ_T0079687.1 MGP_AJ_G0031148.1 mouse_genomes_project 6 115948336 115952633 + MGP_AJ_P0079687 Zfp637 protein_coding protein_coding MGP_AJ_T0079688.1 MGP_AJ_G0031148.1 mouse_genomes_project 6 115950472 115952795 + Zfp637 protein_coding retained_intron MGP_AJ_T0008718.1 MGP_AJ_G0007043.1 mouse_genomes_project 6 115256251 115258287 + D030044L04Rik lincRNA lincRNA MGP_AJ_T0011835.1 MGP_AJ_G0009933.1 mouse_genomes_project 6 128035209 128047170 - MGP_AJ_P0011835 Clec7a polymorphic_pseudogene protein_coding MGP_AJ_T0011836.1 MGP_AJ_G0009933.1 mouse_genomes_project 6 128035209 128047165 - MGP_AJ_P0011836 Clec7a polymorphic_pseudogene polymorphic_pseudogene MGP_AJ_T0011837.1 MGP_AJ_G0009933.1 mouse_genomes_project 6 128036652 128047170 - MGP_AJ_P0011837 Clec7a polymorphic_pseudogene protein_coding MGP_AJ_T0011838.1 MGP_AJ_G0009933.1 mouse_genomes_project 6 128044927 128047172 - Clec7a polymorphic_pseudogene retained_intron MGP_AJ_T0008701.1 MGP_AJ_G0007028.1 mouse_genomes_project 6 98636179 98642253 + 1700049E22Rik lincRNA lincRNA MGP_AJ_T0100119.1 MGP_AJ_G0038085.1 mouse_genomes_project 6 123232263 123232325 - Rnu7 snRNA snRNA MGP_AJ_T0015230.1 MGP_AJ_G0013325.1 mouse_genomes_project 6 1287876 1290870 - processed_pseudogene processed_pseudogene MGP_AJ_T0000308.1 MGP_AJ_G0000252.1 mouse_genomes_project 6 67258628 67259106 - IG_V_pseudogene IG_V_pseudogene MGP_AJ_T0002004.1 MGP_AJ_G0001917.1 mouse_genomes_project 6 69250926 69254123 - TEC TEC MGP_AJ_T0081052.1 MGP_AJ_G0031457.1 mouse_genomes_project 6 144797903 144873018 + MGP_AJ_P0081052 Rassf8 protein_coding protein_coding MGP_AJ_T0081053.1 MGP_AJ_G0031457.1 mouse_genomes_project 6 144801713 144867127 + MGP_AJ_P0081053 Rassf8 protein_coding protein_coding MGP_AJ_T0081054.1 MGP_AJ_G0031457.1 mouse_genomes_project 6 144860321 144869523 + MGP_AJ_P0081054 Rassf8 protein_coding protein_coding MGP_AJ_T0081055.1 MGP_AJ_G0031457.1 mouse_genomes_project 6 144871882 144873013 + MGP_AJ_P0081055 Rassf8 protein_coding protein_coding MGP_AJ_T0010791.1 MGP_AJ_G0008913.1 mouse_genomes_project 6 103494961 103495039 + Gm25570 miRNA miRNA MGP_AJ_T0015437.1 MGP_AJ_G0013532.1 mouse_genomes_project 6 69807085 69807581 - processed_pseudogene processed_pseudogene MGP_AJ_T0077335.1 MGP_AJ_G0030639.1 mouse_genomes_project 6 39643655 39644588 + MGP_AJ_P0077335 Olfr447 protein_coding protein_coding MGP_AJ_T0018251.1 MGP_AJ_G0015605.1 mouse_genomes_project 6 45637548 45653905 - Gm44764 processed_transcript lincRNA MGP_AJ_T0018252.1 MGP_AJ_G0015605.1 mouse_genomes_project 6 45653092 45653912 - Gm44764 processed_transcript retained_intron MGP_AJ_T0008679.1 MGP_AJ_G0007012.1 mouse_genomes_project 6 87250409 87251791 - Gm44204 lincRNA lincRNA MGP_AJ_T0000180.1 MGP_AJ_G0000136.1 mouse_genomes_project 6 67233368 67233934 - MGP_AJ_P0000180 Igkv5-48 IG_V_gene IG_V_gene MGP_AJ_T0001911.1 MGP_AJ_G0001824.1 mouse_genomes_project 6 1683218 1687367 + TEC TEC MGP_AJ_T0004935.1 MGP_AJ_G0004236.1 mouse_genomes_project 6 36315619 36324305 - Gm16272 antisense antisense MGP_AJ_T0010793.1 MGP_AJ_G0008915.1 mouse_genomes_project 6 106558795 106558856 + Mir7661 miRNA miRNA MGP_AJ_T0000157.1 MGP_AJ_G0000120.1 mouse_genomes_project 6 65839661 65840440 + MGP_AJ_P0000157 Igkv1-99 IG_V_gene IG_V_gene MGP_AJ_T0000158.1 MGP_AJ_G0000120.1 mouse_genomes_project 6 65839675 65840440 + MGP_AJ_P0000158 Igkv1-99 IG_V_gene IG_V_gene MGP_AJ_T0015338.1 MGP_AJ_G0013433.1 mouse_genomes_project 6 45873164 45873803 - processed_pseudogene processed_pseudogene MGP_AJ_T0010806.1 MGP_AJ_G0008928.1 mouse_genomes_project 6 121182096 121182157 + Mir7231 miRNA miRNA MGP_AJ_T0001998.1 MGP_AJ_G0001911.1 mouse_genomes_project 6 59050685 59052717 + TEC TEC MGP_AJ_T0002070.1 MGP_AJ_G0001983.1 mouse_genomes_project 6 86725759 86732103 - TEC TEC MGP_AJ_T0100086.1 MGP_AJ_G0038052.1 mouse_genomes_project 6 39069382 39069489 - Gm24611 snRNA snRNA MGP_AJ_T0098802.1 MGP_AJ_G0036786.1 mouse_genomes_project 6 66738594 66738921 - Rprl1 ribozyme ribozyme MGP_AJ_T0015317.1 MGP_AJ_G0013412.1 mouse_genomes_project 6 40157465 40159213 + processed_pseudogene processed_pseudogene MGP_AJ_T0008622.1 MGP_AJ_G0006966.1 mouse_genomes_project 6 52540317 52550319 + Gm3279 lincRNA lincRNA MGP_AJ_T0079549.1 MGP_AJ_G0031121.1 mouse_genomes_project 6 113707655 113724166 - Raf1 protein_coding retained_intron MGP_AJ_T0079550.1 MGP_AJ_G0031121.1 mouse_genomes_project 6 113708157 113767577 - MGP_AJ_P0079550 Raf1 protein_coding protein_coding MGP_AJ_T0079551.1 MGP_AJ_G0031121.1 mouse_genomes_project 6 113708157 113768248 - MGP_AJ_P0079551 Raf1 protein_coding protein_coding MGP_AJ_T0079552.1 MGP_AJ_G0031121.1 mouse_genomes_project 6 113708185 113711414 - MGP_AJ_P0079552 Raf1 protein_coding protein_coding MGP_AJ_T0079553.1 MGP_AJ_G0031121.1 mouse_genomes_project 6 113708829 113709907 - Raf1 protein_coding retained_intron MGP_AJ_T0079554.1 MGP_AJ_G0031121.1 mouse_genomes_project 6 113709182 113713133 - MGP_AJ_P0079554 Raf1 protein_coding nonsense_mediated_decay MGP_AJ_T0079555.1 MGP_AJ_G0031121.1 mouse_genomes_project 6 113709853 113720271 - Raf1 protein_coding retained_intron MGP_AJ_T0079556.1 MGP_AJ_G0031121.1 mouse_genomes_project 6 113711404 113716618 - Raf1 protein_coding retained_intron MGP_AJ_T0079557.1 MGP_AJ_G0031121.1 mouse_genomes_project 6 113711414 113716656 - Raf1 protein_coding retained_intron MGP_AJ_T0079558.1 MGP_AJ_G0031121.1 mouse_genomes_project 6 113713111 113722540 - MGP_AJ_P0079558 Raf1 protein_coding protein_coding MGP_AJ_T0079559.1 MGP_AJ_G0031121.1 mouse_genomes_project 6 113719742 113768248 - Raf1 protein_coding retained_intron MGP_AJ_T0015367.1 MGP_AJ_G0013462.1 mouse_genomes_project 6 57035695 57036653 + processed_pseudogene processed_pseudogene MGP_AJ_T0076678.1 MGP_AJ_G0030490.1 mouse_genomes_project 6 25908918 25911617 + MGP_AJ_P0076678 Hilpda protein_coding protein_coding MGP_AJ_T0076679.1 MGP_AJ_G0030490.1 mouse_genomes_project 6 25909056 25911877 + MGP_AJ_P0076679 Hilpda protein_coding protein_coding MGP_AJ_T0015348.1 MGP_AJ_G0013443.1 mouse_genomes_project 6 48952297 48952951 + processed_pseudogene processed_pseudogene MGP_AJ_T0081022.1 MGP_AJ_G0031452.1 mouse_genomes_project 6 144213265 144244144 - Casc1 protein_coding retained_intron MGP_AJ_T0081023.1 MGP_AJ_G0031452.1 mouse_genomes_project 6 144213265 144249805 - MGP_AJ_P0081023 Casc1 protein_coding protein_coding MGP_AJ_T0081024.1 MGP_AJ_G0031452.1 mouse_genomes_project 6 144213265 144249626 - MGP_AJ_P0081024 Casc1 protein_coding protein_coding MGP_AJ_T0081025.1 MGP_AJ_G0031452.1 mouse_genomes_project 6 144213373 144249709 - MGP_AJ_P0081025 Casc1 protein_coding protein_coding MGP_AJ_T0081026.1 MGP_AJ_G0031452.1 mouse_genomes_project 6 144228609 144249734 - Casc1 protein_coding retained_intron MGP_AJ_T0081027.1 MGP_AJ_G0031452.1 mouse_genomes_project 6 144231323 144249704 - Casc1 protein_coding processed_transcript MGP_AJ_T0081028.1 MGP_AJ_G0031452.1 mouse_genomes_project 6 144241682 144249714 - Casc1 protein_coding retained_intron MGP_AJ_T0081029.1 MGP_AJ_G0031452.1 mouse_genomes_project 6 144243064 144249744 - Casc1 protein_coding retained_intron MGP_AJ_T0081030.1 MGP_AJ_G0031452.1 mouse_genomes_project 6 144246820 144249840 - Casc1 protein_coding retained_intron MGP_AJ_T0008734.1 MGP_AJ_G0007057.1 mouse_genomes_project 6 122675486 122678594 + Gm43971 lincRNA lincRNA MGP_AJ_T0076604.1 MGP_AJ_G0030474.1 mouse_genomes_project 6 21490559 21520664 + MGP_AJ_P0076604 Hyal5 protein_coding protein_coding MGP_AJ_T0076605.1 MGP_AJ_G0030474.1 mouse_genomes_project 6 21507584 21520511 + MGP_AJ_P0076605 Hyal5 protein_coding protein_coding MGP_AJ_T0076606.1 MGP_AJ_G0030474.1 mouse_genomes_project 6 21519242 21520451 + Hyal5 protein_coding processed_transcript MGP_AJ_T0099075.1 MGP_AJ_G0037048.1 mouse_genomes_project 6 86288690 86289155 - Gm44265 sense_intronic sense_intronic MGP_AJ_T0018246.1 MGP_AJ_G0015603.1 mouse_genomes_project 6 36258090 36272392 + 8030453O22Rik processed_transcript antisense MGP_AJ_T0018247.1 MGP_AJ_G0015603.1 mouse_genomes_project 6 36258099 36275535 + 8030453O22Rik processed_transcript antisense MGP_AJ_T0018248.1 MGP_AJ_G0015603.1 mouse_genomes_project 6 36258103 36258852 + 8030453O22Rik processed_transcript retained_intron MGP_AJ_T0002086.1 MGP_AJ_G0001999.1 mouse_genomes_project 6 90068463 90070393 + TEC TEC MGP_AJ_T0080617.1 MGP_AJ_G0031364.1 mouse_genomes_project 6 131530860 131531862 + MGP_AJ_P0080617 Tas2r123 protein_coding protein_coding MGP_AJ_T0099137.1 MGP_AJ_G0037104.1 mouse_genomes_project 6 89575251 89585314 + Gm45216 sense_overlapping sense_overlapping MGP_AJ_T0015547.1 MGP_AJ_G0013642.1 mouse_genomes_project 6 112837431 112837864 + processed_pseudogene processed_pseudogene MGP_AJ_T0077752.1 MGP_AJ_G0030738.1 mouse_genomes_project 6 51953017 51996313 - MGP_AJ_P0077752 Crhr2 protein_coding protein_coding MGP_AJ_T0077753.1 MGP_AJ_G0030738.1 mouse_genomes_project 6 51954153 51980954 - MGP_AJ_P0077753 Crhr2 protein_coding nonsense_mediated_decay MGP_AJ_T0077754.1 MGP_AJ_G0030738.1 mouse_genomes_project 6 51954180 51980882 - MGP_AJ_P0077754 Crhr2 protein_coding protein_coding MGP_AJ_T0077755.1 MGP_AJ_G0030738.1 mouse_genomes_project 6 51954245 51980740 - MGP_AJ_P0077755 Crhr2 protein_coding unknown_likely_coding MGP_AJ_T0077756.1 MGP_AJ_G0030738.1 mouse_genomes_project 6 51954987 51996140 - MGP_AJ_P0077756 Crhr2 protein_coding protein_coding MGP_AJ_T0077757.1 MGP_AJ_G0030738.1 mouse_genomes_project 6 51955925 51963535 - Crhr2 protein_coding retained_intron MGP_AJ_T0077758.1 MGP_AJ_G0030738.1 mouse_genomes_project 6 51961588 51996315 - Crhr2 protein_coding retained_intron MGP_AJ_T0077759.1 MGP_AJ_G0030738.1 mouse_genomes_project 6 51967711 51980740 - Crhr2 protein_coding retained_intron MGP_AJ_T0008651.1 MGP_AJ_G0006993.1 mouse_genomes_project 6 79763461 79770908 + lincRNA lincRNA MGP_AJ_T0008653.1 MGP_AJ_G0006993.1 mouse_genomes_project 6 79769944 79771486 + lincRNA lincRNA MGP_AJ_T0008603.1 MGP_AJ_G0006952.1 mouse_genomes_project 6 48099392 48103773 - Gm44447 lincRNA lincRNA MGP_AJ_T0010817.1 MGP_AJ_G0008939.1 mouse_genomes_project 6 134567280 134567385 + Gm22892 miRNA miRNA MGP_AJ_T0078386.1 MGP_AJ_G0030896.1 mouse_genomes_project 6 81016098 81094554 + MGP_AJ_P0078386 Slc4a5 protein_coding protein_coding MGP_AJ_T0078387.1 MGP_AJ_G0030896.1 mouse_genomes_project 6 81028597 81054310 + Slc4a5 protein_coding processed_transcript MGP_AJ_T0078388.1 MGP_AJ_G0030896.1 mouse_genomes_project 6 81028782 81098994 + MGP_AJ_P0078388 Slc4a5 protein_coding protein_coding MGP_AJ_T0078389.1 MGP_AJ_G0030896.1 mouse_genomes_project 6 81070341 81082149 + Slc4a5 protein_coding processed_transcript MGP_AJ_T0078390.1 MGP_AJ_G0030896.1 mouse_genomes_project 6 81081330 81090794 + Slc4a5 protein_coding processed_transcript MGP_AJ_T0004944.1 MGP_AJ_G0004244.1 mouse_genomes_project 6 45404480 45412869 - Gm44119 antisense antisense MGP_AJ_T0002053.1 MGP_AJ_G0001966.1 mouse_genomes_project 6 85060354 85062476 - TEC TEC MGP_AJ_T0011646.1 MGP_AJ_G0009768.1 mouse_genomes_project 6 49082536 49082627 + Gm27695 misc_RNA misc_RNA MGP_AJ_T0015353.1 MGP_AJ_G0013448.1 mouse_genomes_project 6 49904961 49905501 + processed_pseudogene processed_pseudogene MGP_AJ_T0101358.1 MGP_AJ_G0039324.1 mouse_genomes_project 6 72010713 72010845 + Gm26179 snoRNA snoRNA MGP_AJ_T0077288.1 MGP_AJ_G0030620.1 mouse_genomes_project 6 39045000 39054327 - MGP_AJ_P0077288 Fam131b protein_coding protein_coding MGP_AJ_T0077289.1 MGP_AJ_G0030620.1 mouse_genomes_project 6 39047847 39054156 - MGP_AJ_P0077289 Fam131b protein_coding protein_coding MGP_AJ_T0079834.1 MGP_AJ_G0031170.1 mouse_genomes_project 6 118435410 118436479 + MGP_AJ_P0079834 D330020A13Rik protein_coding protein_coding MGP_AJ_T0005095.1 MGP_AJ_G0004346.1 mouse_genomes_project 6 127525915 127548269 - Gm15987 antisense antisense MGP_AJ_T0101364.1 MGP_AJ_G0039330.1 mouse_genomes_project 6 91594039 91594169 + Gm22312 snoRNA snoRNA MGP_AJ_T0008726.1 MGP_AJ_G0007049.1 mouse_genomes_project 6 116008223 116008544 + Gm29509 lincRNA lincRNA MGP_AJ_T0002568.1 MGP_AJ_G0002468.1 mouse_genomes_project 6 38304478 38304529 + MGP_AJ_P0002568 Trbj2-2 TR_J_gene TR_J_gene MGP_AJ_T0005629.1 MGP_AJ_G0004740.1 mouse_genomes_project 6 85592866 85599771 + E230015B07Rik bidirectional_promoter_lncRNA bidirectional_promoter_lncRNA MGP_AJ_T0005630.1 MGP_AJ_G0004740.1 mouse_genomes_project 6 85592914 85601509 + E230015B07Rik bidirectional_promoter_lncRNA bidirectional_promoter_lncRNA MGP_AJ_T0005631.1 MGP_AJ_G0004740.1 mouse_genomes_project 6 85592914 85600722 + E230015B07Rik bidirectional_promoter_lncRNA bidirectional_promoter_lncRNA MGP_AJ_T0000186.1 MGP_AJ_G0000141.1 mouse_genomes_project 6 67500090 67500553 - MGP_AJ_P0000186 Igkv12-38 IG_V_gene IG_V_gene MGP_AJ_T0000187.1 MGP_AJ_G0000141.1 mouse_genomes_project 6 67500090 67500553 - MGP_AJ_P0000187 Igkv12-38 IG_V_gene IG_V_gene MGP_AJ_T0010780.1 MGP_AJ_G0008902.1 mouse_genomes_project 6 83198473 83198555 - Mir705 miRNA miRNA MGP_AJ_T0000057.1 MGP_AJ_G0000045.1 mouse_genomes_project 6 39719135 39719596 + MGP_AJ_P0000057 Gm17472 IG_LV_gene IG_LV_gene MGP_AJ_T0015578.1 MGP_AJ_G0013673.1 mouse_genomes_project 6 121056798 121057043 + processed_pseudogene processed_pseudogene MGP_AJ_T0002163.1 MGP_AJ_G0002075.1 mouse_genomes_project 6 136073720 136074775 - TEC TEC MGP_AJ_T0079440.1 MGP_AJ_G0031101.1 mouse_genomes_project 6 111683474 111695652 + MGP_AJ_P0079440 Brk1 protein_coding protein_coding MGP_AJ_T0080634.1 MGP_AJ_G0031378.1 mouse_genomes_project 6 132868235 133105532 + MGP_AJ_P0080634 Etv6 protein_coding protein_coding MGP_AJ_T0080635.1 MGP_AJ_G0031378.1 mouse_genomes_project 6 132868503 133083727 + MGP_AJ_P0080635 Etv6 protein_coding protein_coding MGP_AJ_T0080636.1 MGP_AJ_G0031378.1 mouse_genomes_project 6 132969334 133105539 + MGP_AJ_P0080636 Etv6 protein_coding protein_coding MGP_AJ_T0080637.1 MGP_AJ_G0031378.1 mouse_genomes_project 6 133068924 133097390 + Etv6 protein_coding retained_intron MGP_AJ_T0080638.1 MGP_AJ_G0031378.1 mouse_genomes_project 6 133083007 133084000 + Etv6 protein_coding processed_transcript MGP_AJ_T0002158.1 MGP_AJ_G0002070.1 mouse_genomes_project 6 133460723 133461409 + TEC TEC MGP_AJ_T0015414.1 MGP_AJ_G0013509.1 mouse_genomes_project 6 64705504 64706559 - processed_pseudogene processed_pseudogene MGP_AJ_T0080696.1 MGP_AJ_G0031389.1 mouse_genomes_project 6 133899741 133919645 + MGP_AJ_P0080696 Gprc5a protein_coding protein_coding MGP_AJ_T0079055.1 MGP_AJ_G0031028.1 mouse_genomes_project 6 90439458 90781036 - MGP_AJ_P0079055 Prickle2 protein_coding protein_coding MGP_AJ_T0079056.1 MGP_AJ_G0031028.1 mouse_genomes_project 6 90439458 90636762 - MGP_AJ_P0079056 Prickle2 protein_coding protein_coding MGP_AJ_T0079057.1 MGP_AJ_G0031028.1 mouse_genomes_project 6 90439460 90604525 - MGP_AJ_P0079057 Prickle2 protein_coding protein_coding MGP_AJ_T0079058.1 MGP_AJ_G0031028.1 mouse_genomes_project 6 90443934 90551533 - MGP_AJ_P0079058 Prickle2 protein_coding protein_coding MGP_AJ_T0015613.1 MGP_AJ_G0013708.1 mouse_genomes_project 6 127550032 127551140 - processed_pseudogene processed_pseudogene MGP_AJ_T0077101.1 MGP_AJ_G0030562.1 mouse_genomes_project 6 35340196 35351678 - MGP_AJ_P0077101 Klrg2 protein_coding nonsense_mediated_decay MGP_AJ_T0077102.1 MGP_AJ_G0030562.1 mouse_genomes_project 6 35341163 35351678 - MGP_AJ_P0077102 Klrg2 protein_coding protein_coding MGP_AJ_T0077103.1 MGP_AJ_G0030562.1 mouse_genomes_project 6 35341764 35351687 - MGP_AJ_P0077103 Klrg2 protein_coding protein_coding MGP_AJ_T0080570.1 MGP_AJ_G0031337.1 mouse_genomes_project 6 128817176 128985749 - MGP_AJ_P0080570 Klra1 protein_coding protein_coding MGP_AJ_T0080571.1 MGP_AJ_G0031337.1 mouse_genomes_project 6 128817478 128974162 - Klra1 protein_coding retained_intron MGP_AJ_T0015501.1 MGP_AJ_G0013596.1 mouse_genomes_project 6 96853510 96853790 + processed_pseudogene processed_pseudogene MGP_AJ_T0080652.1 MGP_AJ_G0031382.1 mouse_genomes_project 6 133475134 133542800 + MGP_AJ_P0080652 Borcs5 protein_coding protein_coding MGP_AJ_T0080653.1 MGP_AJ_G0031382.1 mouse_genomes_project 6 133476596 133543617 + MGP_AJ_P0080653 Borcs5 protein_coding protein_coding MGP_AJ_T0080654.1 MGP_AJ_G0031382.1 mouse_genomes_project 6 133476617 133480353 + Borcs5 protein_coding retained_intron MGP_AJ_T0080655.1 MGP_AJ_G0031382.1 mouse_genomes_project 6 133476911 133522084 + Borcs5 protein_coding retained_intron MGP_AJ_T0080656.1 MGP_AJ_G0031382.1 mouse_genomes_project 6 133533988 133542900 + Borcs5 protein_coding processed_transcript MGP_AJ_T0077864.1 MGP_AJ_G0030779.1 mouse_genomes_project 6 54816363 54817383 - MGP_AJ_P0077864 protein_coding protein_coding MGP_AJ_T0078242.1 MGP_AJ_G0030865.1 mouse_genomes_project 6 76146550 76149499 + MGP_AJ_P0078242 Reg2 protein_coding protein_coding MGP_AJ_T0005122.1 MGP_AJ_G0004370.1 mouse_genomes_project 6 144220723 144225948 + Gm15543 antisense antisense MGP_AJ_T0101332.1 MGP_AJ_G0039298.1 mouse_genomes_project 6 32624092 32624227 + Gm23273 snoRNA snoRNA MGP_AJ_T0102737.1 MGP_AJ_G0040478.1 mouse_genomes_project 6 132204865 132206499 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0100100.1 MGP_AJ_G0038066.1 mouse_genomes_project 6 91884461 91884567 + Gm23035 snRNA snRNA MGP_AJ_T0077199.1 MGP_AJ_G0030582.1 mouse_genomes_project 6 37246831 37247904 + MGP_AJ_P0077199 Tas2r137 protein_coding protein_coding MGP_AJ_T0078909.1 MGP_AJ_G0030994.1 mouse_genomes_project 6 87969930 87977724 + MGP_AJ_P0078909 Vmn1r46 protein_coding protein_coding MGP_AJ_T0078910.1 MGP_AJ_G0030994.1 mouse_genomes_project 6 87976767 87977697 + MGP_AJ_P0078910 Vmn1r46 protein_coding protein_coding MGP_AJ_T0015232.1 MGP_AJ_G0013327.1 mouse_genomes_project 6 3093570 3093803 - processed_pseudogene processed_pseudogene MGP_AJ_T0102714.1 MGP_AJ_G0040456.1 mouse_genomes_project 6 122556902 122578164 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0010811.1 MGP_AJ_G0008933.1 mouse_genomes_project 6 123720598 123720727 - Mir8113 miRNA miRNA MGP_AJ_T0100101.1 MGP_AJ_G0038067.1 mouse_genomes_project 6 93206475 93206582 - Gm26501 snRNA snRNA MGP_AJ_T0018221.1 MGP_AJ_G0015599.1 mouse_genomes_project 6 29155 45674 - processed_transcript lincRNA MGP_AJ_T0018222.1 MGP_AJ_G0015599.1 mouse_genomes_project 6 31520 45713 - processed_transcript lincRNA MGP_AJ_T0018223.1 MGP_AJ_G0015599.1 mouse_genomes_project 6 31773 45745 - processed_transcript retained_intron MGP_AJ_T0099085.1 MGP_AJ_G0037058.1 mouse_genomes_project 6 143708779 143711073 - Sox5it sense_intronic sense_intronic MGP_AJ_T0015636.1 MGP_AJ_G0013731.1 mouse_genomes_project 6 131138735 131139207 - processed_pseudogene processed_pseudogene MGP_AJ_T0079189.1 MGP_AJ_G0031054.1 mouse_genomes_project 6 98327150 98386372 - MGP_AJ_P0079189 Rybp protein_coding protein_coding MGP_AJ_T0079190.1 MGP_AJ_G0031054.1 mouse_genomes_project 6 98330627 98331748 - Rybp protein_coding retained_intron MGP_AJ_T0079191.1 MGP_AJ_G0031054.1 mouse_genomes_project 6 98331710 98385635 - Rybp protein_coding retained_intron MGP_AJ_T0000161.1 MGP_AJ_G0000122.1 mouse_genomes_project 6 65940211 65940691 - MGP_AJ_P0000161 Igkv10-96 IG_V_gene IG_V_gene MGP_AJ_T0010798.1 MGP_AJ_G0008920.1 mouse_genomes_project 6 113871667 113871730 + Mir7660 miRNA miRNA MGP_AJ_T0076336.1 MGP_AJ_G0030422.1 mouse_genomes_project 6 5013124 5219118 + MGP_AJ_P0076336 Umad1 protein_coding protein_coding MGP_AJ_T0076337.1 MGP_AJ_G0030422.1 mouse_genomes_project 6 5013186 5184833 + MGP_AJ_P0076337 Umad1 protein_coding protein_coding MGP_AJ_T0076338.1 MGP_AJ_G0030422.1 mouse_genomes_project 6 5013218 5186458 + MGP_AJ_P0076338 Umad1 protein_coding protein_coding MGP_AJ_T0076339.1 MGP_AJ_G0030422.1 mouse_genomes_project 6 5013264 5184974 + MGP_AJ_P0076339 Umad1 protein_coding protein_coding MGP_AJ_T0076340.1 MGP_AJ_G0030422.1 mouse_genomes_project 6 5013266 5186455 + MGP_AJ_P0076340 Umad1 protein_coding protein_coding MGP_AJ_T0076341.1 MGP_AJ_G0030422.1 mouse_genomes_project 6 5013280 5037377 + Umad1 protein_coding processed_transcript MGP_AJ_T0076343.1 MGP_AJ_G0030422.1 mouse_genomes_project 6 5024683 5186461 + MGP_AJ_P0076343 Umad1 protein_coding protein_coding MGP_AJ_T0076344.1 MGP_AJ_G0030422.1 mouse_genomes_project 6 5177362 5185932 + Umad1 protein_coding processed_transcript MGP_AJ_T0015295.1 MGP_AJ_G0013390.1 mouse_genomes_project 6 33262732 33262937 + processed_pseudogene processed_pseudogene MGP_AJ_T0077870.1 MGP_AJ_G0030784.1 mouse_genomes_project 6 55666930 55808514 + MGP_AJ_P0077870 Abcg2 protein_coding protein_coding MGP_AJ_T0077871.1 MGP_AJ_G0030784.1 mouse_genomes_project 6 55750164 55774982 + Abcg2 protein_coding retained_intron MGP_AJ_T0077872.1 MGP_AJ_G0030784.1 mouse_genomes_project 6 55750178 55775443 + MGP_AJ_P0077872 Abcg2 protein_coding protein_coding MGP_AJ_T0077873.1 MGP_AJ_G0030784.1 mouse_genomes_project 6 55750178 55805707 + MGP_AJ_P0077873 Abcg2 protein_coding nonsense_mediated_decay MGP_AJ_T0077874.1 MGP_AJ_G0030784.1 mouse_genomes_project 6 55750182 55803398 + MGP_AJ_P0077874 Abcg2 protein_coding protein_coding MGP_AJ_T0077875.1 MGP_AJ_G0030784.1 mouse_genomes_project 6 55750182 55805349 + MGP_AJ_P0077875 Abcg2 protein_coding protein_coding MGP_AJ_T0077876.1 MGP_AJ_G0030784.1 mouse_genomes_project 6 55750200 55775443 + MGP_AJ_P0077876 Abcg2 protein_coding protein_coding MGP_AJ_T0077877.1 MGP_AJ_G0030784.1 mouse_genomes_project 6 55773607 55774945 + Abcg2 protein_coding retained_intron MGP_AJ_T0077878.1 MGP_AJ_G0030784.1 mouse_genomes_project 6 55784605 55805213 + MGP_AJ_P0077878 Abcg2 protein_coding nonsense_mediated_decay MGP_AJ_T0077879.1 MGP_AJ_G0030784.1 mouse_genomes_project 6 55790135 55797509 + Abcg2 protein_coding retained_intron MGP_AJ_T0076308.1 MGP_AJ_G0030413.1 mouse_genomes_project 6 3634260 3638256 + MGP_AJ_P0076308 Dlx6 protein_coding protein_coding MGP_AJ_T0076309.1 MGP_AJ_G0030413.1 mouse_genomes_project 6 3634648 3638256 + MGP_AJ_P0076309 Dlx6 protein_coding protein_coding MGP_AJ_T0076310.1 MGP_AJ_G0030413.1 mouse_genomes_project 6 3634724 3636357 + Dlx6 protein_coding retained_intron MGP_AJ_T0102051.1 MGP_AJ_G0039840.1 mouse_genomes_project 6 127690182 127703253 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_AJ_T0102052.1 MGP_AJ_G0039840.1 mouse_genomes_project 6 127690182 127695962 + transcribed_unprocessed_pseudogene processed_transcript MGP_AJ_T0081170.1 MGP_AJ_G0031479.1 mouse_genomes_project 6 147760114 147779357 - Ipo8 protein_coding retained_intron MGP_AJ_T0081171.1 MGP_AJ_G0031479.1 mouse_genomes_project 6 147760114 147821500 - MGP_AJ_P0081171 Ipo8 protein_coding protein_coding MGP_AJ_T0081172.1 MGP_AJ_G0031479.1 mouse_genomes_project 6 147760124 147765041 - Ipo8 protein_coding retained_intron MGP_AJ_T0081173.1 MGP_AJ_G0031479.1 mouse_genomes_project 6 147765718 147768132 - Ipo8 protein_coding retained_intron MGP_AJ_T0081174.1 MGP_AJ_G0031479.1 mouse_genomes_project 6 147766327 147772018 - Ipo8 protein_coding retained_intron MGP_AJ_T0081175.1 MGP_AJ_G0031479.1 mouse_genomes_project 6 147773953 147787941 - Ipo8 protein_coding retained_intron MGP_AJ_T0081176.1 MGP_AJ_G0031479.1 mouse_genomes_project 6 147780310 147814461 - Ipo8 protein_coding retained_intron MGP_AJ_T0081177.1 MGP_AJ_G0031479.1 mouse_genomes_project 6 147791050 147807767 - Ipo8 protein_coding processed_transcript MGP_AJ_T0081178.1 MGP_AJ_G0031479.1 mouse_genomes_project 6 147791051 147821497 - MGP_AJ_P0081178 Ipo8 protein_coding nonsense_mediated_decay MGP_AJ_T0081179.1 MGP_AJ_G0031479.1 mouse_genomes_project 6 147791053 147821459 - MGP_AJ_P0081179 Ipo8 protein_coding protein_coding MGP_AJ_T0081180.1 MGP_AJ_G0031479.1 mouse_genomes_project 6 147809298 147812204 - Ipo8 protein_coding retained_intron MGP_AJ_T0001968.1 MGP_AJ_G0001881.1 mouse_genomes_project 6 42170226 42172386 + TEC TEC MGP_AJ_T0002089.1 MGP_AJ_G0002002.1 mouse_genomes_project 6 91278337 91281313 + TEC TEC MGP_AJ_T0015396.1 MGP_AJ_G0013491.1 mouse_genomes_project 6 63070375 63071069 + processed_pseudogene processed_pseudogene MGP_AJ_T0015245.1 MGP_AJ_G0013340.1 mouse_genomes_project 6 6898362 6899425 - processed_pseudogene processed_pseudogene MGP_AJ_T0005636.1 MGP_AJ_G0004744.1 mouse_genomes_project 6 135365992 135370026 - Gm44140 bidirectional_promoter_lncRNA bidirectional_promoter_lncRNA MGP_AJ_T0000294.1 MGP_AJ_G0000238.1 mouse_genomes_project 6 66200817 66201213 - IG_V_pseudogene IG_V_pseudogene MGP_AJ_T0015318.1 MGP_AJ_G0013413.1 mouse_genomes_project 6 40553368 40554114 - processed_pseudogene processed_pseudogene MGP_AJ_T0015444.1 MGP_AJ_G0013539.1 mouse_genomes_project 6 73048528 73049497 - processed_pseudogene processed_pseudogene MGP_AJ_T0015577.1 MGP_AJ_G0013672.1 mouse_genomes_project 6 120906349 120907109 - processed_pseudogene processed_pseudogene MGP_AJ_T0005044.1 MGP_AJ_G0004307.1 mouse_genomes_project 6 99301094 99312755 + Gm26911 antisense antisense MGP_AJ_T0005045.1 MGP_AJ_G0004307.1 mouse_genomes_project 6 99301111 99323115 + Gm26911 antisense antisense MGP_AJ_T0005046.1 MGP_AJ_G0004307.1 mouse_genomes_project 6 99301183 99311371 + Gm26911 antisense antisense MGP_AJ_T0079522.1 MGP_AJ_G0031114.1 mouse_genomes_project 6 113223013 113361172 + Syn2 protein_coding retained_intron MGP_AJ_T0079523.1 MGP_AJ_G0031114.1 mouse_genomes_project 6 113223013 113362640 + MGP_AJ_P0079523 Syn2 protein_coding protein_coding MGP_AJ_T0079524.1 MGP_AJ_G0031114.1 mouse_genomes_project 6 113223028 113368087 + MGP_AJ_P0079524 Syn2 protein_coding protein_coding MGP_AJ_T0079525.1 MGP_AJ_G0031114.1 mouse_genomes_project 6 113223061 113362640 + MGP_AJ_P0079525 Syn2 protein_coding protein_coding MGP_AJ_T0079526.1 MGP_AJ_G0031114.1 mouse_genomes_project 6 113299602 113329395 + Syn2 protein_coding processed_transcript MGP_AJ_T0079528.1 MGP_AJ_G0031114.1 mouse_genomes_project 6 113324281 113362640 + Syn2 protein_coding processed_transcript MGP_AJ_T0079531.1 MGP_AJ_G0031114.1 mouse_genomes_project 6 113339105 113364790 + Syn2 protein_coding retained_intron MGP_AJ_T0079769.1 MGP_AJ_G0031162.1 mouse_genomes_project 6 117472890 117538705 - MGP_AJ_P0079769 Adipor2 protein_coding protein_coding MGP_AJ_T0079770.1 MGP_AJ_G0031162.1 mouse_genomes_project 6 117473505 117509676 - MGP_AJ_P0079770 Adipor2 protein_coding protein_coding MGP_AJ_T0079771.1 MGP_AJ_G0031162.1 mouse_genomes_project 6 117475238 117511261 - MGP_AJ_P0079771 Adipor2 protein_coding nonsense_mediated_decay MGP_AJ_T0079772.1 MGP_AJ_G0031162.1 mouse_genomes_project 6 117477460 117538691 - Adipor2 protein_coding retained_intron MGP_AJ_T0079773.1 MGP_AJ_G0031162.1 mouse_genomes_project 6 117491129 117538476 - MGP_AJ_P0079773 Adipor2 protein_coding protein_coding MGP_AJ_T0078571.1 MGP_AJ_G0030932.1 mouse_genomes_project 6 83800040 83806129 - MGP_AJ_P0078571 Nat8f1 protein_coding protein_coding MGP_AJ_T0078572.1 MGP_AJ_G0030932.1 mouse_genomes_project 6 83800048 83806108 - Nat8f1 protein_coding processed_transcript MGP_AJ_T0078573.1 MGP_AJ_G0030932.1 mouse_genomes_project 6 83800516 83806046 - MGP_AJ_P0078573 Nat8f1 protein_coding protein_coding MGP_AJ_T0015346.1 MGP_AJ_G0013441.1 mouse_genomes_project 6 47562545 47563671 - processed_pseudogene processed_pseudogene MGP_AJ_T0076608.1 MGP_AJ_G0030476.1 mouse_genomes_project 6 22282246 22306130 - MGP_AJ_P0076608 Gpr37 protein_coding protein_coding MGP_AJ_T0076609.1 MGP_AJ_G0030476.1 mouse_genomes_project 6 22283844 22307067 - MGP_AJ_P0076609 Gpr37 protein_coding protein_coding MGP_AJ_T0077660.1 MGP_AJ_G0030720.1 mouse_genomes_project 6 49150673 49155554 + MGP_AJ_P0077660 Evx1 protein_coding protein_coding MGP_AJ_T0077661.1 MGP_AJ_G0030720.1 mouse_genomes_project 6 49150727 49153820 + MGP_AJ_P0077661 Evx1 protein_coding protein_coding MGP_AJ_T0077018.1 MGP_AJ_G0030543.1 mouse_genomes_project 6 31963179 32003369 - MGP_AJ_P0077018 Slc13a4 protein_coding protein_coding MGP_AJ_T0077019.1 MGP_AJ_G0030543.1 mouse_genomes_project 6 31975559 31983414 - Slc13a4 protein_coding retained_intron MGP_AJ_T0077020.1 MGP_AJ_G0030543.1 mouse_genomes_project 6 31981742 32003367 - Slc13a4 protein_coding retained_intron MGP_AJ_T0076980.1 MGP_AJ_G0030537.1 mouse_genomes_project 6 31563487 31569738 - MGP_AJ_P0076980 3110062M04Rik protein_coding protein_coding MGP_AJ_T0076981.1 MGP_AJ_G0030537.1 mouse_genomes_project 6 31563556 31569777 - MGP_AJ_P0076981 3110062M04Rik protein_coding protein_coding MGP_AJ_T0076983.1 MGP_AJ_G0030537.1 mouse_genomes_project 6 31565411 31569726 - MGP_AJ_P0076983 3110062M04Rik protein_coding protein_coding MGP_AJ_T0076984.1 MGP_AJ_G0030537.1 mouse_genomes_project 6 31566362 31568846 - MGP_AJ_P0076984 3110062M04Rik protein_coding protein_coding MGP_AJ_T0076985.1 MGP_AJ_G0030537.1 mouse_genomes_project 6 31567062 31568697 - 3110062M04Rik protein_coding retained_intron MGP_AJ_T0077312.1 MGP_AJ_G0030629.1 mouse_genomes_project 6 39262296 39263250 - MGP_AJ_P0077312 Olfr455 protein_coding protein_coding MGP_AJ_T0078234.1 MGP_AJ_G0030862.1 mouse_genomes_project 6 76110894 76113136 + MGP_AJ_P0078234 Reg3b protein_coding protein_coding MGP_AJ_T0078235.1 MGP_AJ_G0030862.1 mouse_genomes_project 6 76111098 76113704 + MGP_AJ_P0078235 Reg3b protein_coding protein_coding MGP_AJ_T0078236.1 MGP_AJ_G0030862.1 mouse_genomes_project 6 76111135 76113146 + MGP_AJ_P0078236 Reg3b protein_coding protein_coding MGP_AJ_T0078237.1 MGP_AJ_G0030862.1 mouse_genomes_project 6 76112768 76113656 + Reg3b protein_coding retained_intron MGP_AJ_T0002136.1 MGP_AJ_G0002048.1 mouse_genomes_project 6 122769010 122774542 - TEC TEC MGP_AJ_T0000284.1 MGP_AJ_G0000228.1 mouse_genomes_project 6 65621432 65621897 + IG_V_pseudogene IG_V_pseudogene MGP_AJ_T0015556.1 MGP_AJ_G0013651.1 mouse_genomes_project 6 115084172 115084581 + processed_pseudogene processed_pseudogene MGP_AJ_T0079283.1 MGP_AJ_G0031075.1 mouse_genomes_project 6 110423882 110454695 - MGP_AJ_P0079283 Ssu2 protein_coding protein_coding MGP_AJ_T0079284.1 MGP_AJ_G0031075.1 mouse_genomes_project 6 110434675 110444395 - Ssu2 protein_coding processed_transcript MGP_AJ_T0079285.1 MGP_AJ_G0031075.1 mouse_genomes_project 6 110435210 110442284 - Ssu2 protein_coding retained_intron MGP_AJ_T0079286.1 MGP_AJ_G0031075.1 mouse_genomes_project 6 110435631 110454671 - MGP_AJ_P0079286 Ssu2 protein_coding unknown_likely_coding MGP_AJ_T0100089.1 MGP_AJ_G0038055.1 mouse_genomes_project 6 50288649 50288813 + Gm25818 snRNA snRNA MGP_AJ_T0100091.1 MGP_AJ_G0038057.1 mouse_genomes_project 6 61471039 61471142 + Gm25205 snRNA snRNA MGP_AJ_T0078989.1 MGP_AJ_G0031014.1 mouse_genomes_project 6 89482002 89483250 - MGP_AJ_P0078989 protein_coding protein_coding MGP_AJ_T0077326.1 MGP_AJ_G0030633.1 mouse_genomes_project 6 39477904 39478858 + MGP_AJ_P0077326 Olfr453 protein_coding protein_coding MGP_AJ_T0077061.1 MGP_AJ_G0030555.1 mouse_genomes_project 6 34830139 34961602 - MGP_AJ_P0077061 D630045J12Rik protein_coding protein_coding MGP_AJ_T0077062.1 MGP_AJ_G0030555.1 mouse_genomes_project 6 34832981 34854385 - D630045J12Rik protein_coding retained_intron MGP_AJ_T0077063.1 MGP_AJ_G0030555.1 mouse_genomes_project 6 34832987 34854328 - D630045J12Rik protein_coding retained_intron MGP_AJ_T0077064.1 MGP_AJ_G0030555.1 mouse_genomes_project 6 34844397 34901388 - D630045J12Rik protein_coding retained_intron MGP_AJ_T0077065.1 MGP_AJ_G0030555.1 mouse_genomes_project 6 34865062 34875669 - D630045J12Rik protein_coding retained_intron MGP_AJ_T0076432.1 MGP_AJ_G0030438.1 mouse_genomes_project 6 12365665 12447596 + MGP_AJ_P0076432 Mdfic protein_coding protein_coding MGP_AJ_T0076433.1 MGP_AJ_G0030438.1 mouse_genomes_project 6 12365665 12447600 + MGP_AJ_P0076433 Mdfic protein_coding protein_coding MGP_AJ_T0076434.1 MGP_AJ_G0030438.1 mouse_genomes_project 6 12365707 12416736 + MGP_AJ_P0076434 Mdfic protein_coding nonsense_mediated_decay MGP_AJ_T0076435.1 MGP_AJ_G0030438.1 mouse_genomes_project 6 12365725 12418805 + MGP_AJ_P0076435 Mdfic protein_coding protein_coding MGP_AJ_T0076436.1 MGP_AJ_G0030438.1 mouse_genomes_project 6 12366091 12446239 + MGP_AJ_P0076436 Mdfic protein_coding protein_coding MGP_AJ_T0076437.1 MGP_AJ_G0030438.1 mouse_genomes_project 6 12373332 12415850 + MGP_AJ_P0076437 Mdfic protein_coding protein_coding MGP_AJ_T0080398.1 MGP_AJ_G0031288.1 mouse_genomes_project 6 126414053 126481519 + MGP_AJ_P0080398 Tspan11 protein_coding protein_coding MGP_AJ_T0080399.1 MGP_AJ_G0031288.1 mouse_genomes_project 6 126414239 126451514 + Tspan11 protein_coding retained_intron MGP_AJ_T0076919.1 MGP_AJ_G0030527.1 mouse_genomes_project 6 30720521 30827403 + MGP_AJ_P0076919 Lrguk protein_coding protein_coding MGP_AJ_T0076920.1 MGP_AJ_G0030527.1 mouse_genomes_project 6 30720523 30739005 + MGP_AJ_P0076920 Lrguk protein_coding protein_coding MGP_AJ_T0076921.1 MGP_AJ_G0030527.1 mouse_genomes_project 6 30730381 30739020 + MGP_AJ_P0076921 Lrguk protein_coding protein_coding MGP_AJ_T0015269.1 MGP_AJ_G0013364.1 mouse_genomes_project 6 16439659 16439766 + processed_pseudogene processed_pseudogene MGP_AJ_T0080014.1 MGP_AJ_G0031210.1 mouse_genomes_project 6 121488709 121526964 + MGP_AJ_P0080014 Clec4b2 protein_coding protein_coding MGP_AJ_T0080563.1 MGP_AJ_G0031333.1 mouse_genomes_project 6 128464603 128470071 - Klra5 protein_coding retained_intron MGP_AJ_T0080564.1 MGP_AJ_G0031333.1 mouse_genomes_project 6 128464603 128484698 - MGP_AJ_P0080564 Klra5 protein_coding protein_coding MGP_AJ_T0080565.1 MGP_AJ_G0031333.1 mouse_genomes_project 6 128464603 128479625 - MGP_AJ_P0080565 Klra5 protein_coding protein_coding MGP_AJ_T0080566.1 MGP_AJ_G0031333.1 mouse_genomes_project 6 128464766 128479567 - MGP_AJ_P0080566 Klra5 protein_coding protein_coding MGP_AJ_T0080851.1 MGP_AJ_G0031420.1 mouse_genomes_project 6 138759877 138890654 + MGP_AJ_P0080851 Pik3c2g protein_coding protein_coding MGP_AJ_T0077634.1 MGP_AJ_G0030712.1 mouse_genomes_project 6 49025273 49027356 - MGP_AJ_P0077634 Hoxa4 protein_coding protein_coding MGP_AJ_T0077086.1 MGP_AJ_G0030560.1 mouse_genomes_project 6 35246515 35252462 + Fmc1 protein_coding processed_transcript MGP_AJ_T0077087.1 MGP_AJ_G0030560.1 mouse_genomes_project 6 35247836 35252463 + MGP_AJ_P0077087 Fmc1 protein_coding protein_coding MGP_AJ_T0077695.1 MGP_AJ_G0030727.1 mouse_genomes_project 6 50896908 50925094 + Chn2 protein_coding processed_transcript MGP_AJ_T0077696.1 MGP_AJ_G0030727.1 mouse_genomes_project 6 50896927 51160234 + MGP_AJ_P0077696 Chn2 protein_coding protein_coding MGP_AJ_T0077697.1 MGP_AJ_G0030727.1 mouse_genomes_project 6 50896967 51080637 + MGP_AJ_P0077697 Chn2 protein_coding nonsense_mediated_decay MGP_AJ_T0077698.1 MGP_AJ_G0030727.1 mouse_genomes_project 6 50897393 51082613 + Chn2 protein_coding processed_transcript MGP_AJ_T0077699.1 MGP_AJ_G0030727.1 mouse_genomes_project 6 50897440 51055426 + MGP_AJ_P0077699 Chn2 protein_coding protein_coding MGP_AJ_T0077700.1 MGP_AJ_G0030727.1 mouse_genomes_project 6 50954854 51080604 + Chn2 protein_coding processed_transcript MGP_AJ_T0077701.1 MGP_AJ_G0030727.1 mouse_genomes_project 6 51124867 51159806 + MGP_AJ_P0077701 Chn2 protein_coding protein_coding MGP_AJ_T0077702.1 MGP_AJ_G0030727.1 mouse_genomes_project 6 51127124 51159598 + MGP_AJ_P0077702 Chn2 protein_coding protein_coding MGP_AJ_T0077703.1 MGP_AJ_G0030727.1 mouse_genomes_project 6 51129141 51159904 + MGP_AJ_P0077703 Chn2 protein_coding protein_coding MGP_AJ_T0077704.1 MGP_AJ_G0030727.1 mouse_genomes_project 6 51132466 51161323 + MGP_AJ_P0077704 Chn2 protein_coding protein_coding MGP_AJ_T0077705.1 MGP_AJ_G0030727.1 mouse_genomes_project 6 51132884 51159757 + MGP_AJ_P0077705 Chn2 protein_coding protein_coding MGP_AJ_T0077706.1 MGP_AJ_G0030727.1 mouse_genomes_project 6 51132884 51159757 + MGP_AJ_P0077706 Chn2 protein_coding protein_coding MGP_AJ_T0077707.1 MGP_AJ_G0030727.1 mouse_genomes_project 6 51132884 51159757 + MGP_AJ_P0077707 Chn2 protein_coding protein_coding MGP_AJ_T0077708.1 MGP_AJ_G0030727.1 mouse_genomes_project 6 51132884 51159757 + MGP_AJ_P0077708 Chn2 protein_coding protein_coding MGP_AJ_T0077709.1 MGP_AJ_G0030727.1 mouse_genomes_project 6 51132884 51159757 + MGP_AJ_P0077709 Chn2 protein_coding protein_coding MGP_AJ_T0081166.1 MGP_AJ_G0031478.1 mouse_genomes_project 6 147221505 147434548 - MGP_AJ_P0081166 Tmtc1 protein_coding protein_coding MGP_AJ_T0081167.1 MGP_AJ_G0031478.1 mouse_genomes_project 6 147221505 147434548 - MGP_AJ_P0081167 Tmtc1 protein_coding protein_coding MGP_AJ_T0081168.1 MGP_AJ_G0031478.1 mouse_genomes_project 6 147235790 147431807 - MGP_AJ_P0081168 Tmtc1 protein_coding nonsense_mediated_decay MGP_AJ_T0081169.1 MGP_AJ_G0031478.1 mouse_genomes_project 6 147401657 147431807 - MGP_AJ_P0081169 Tmtc1 protein_coding protein_coding MGP_AJ_T0081130.1 MGP_AJ_G0031470.1 mouse_genomes_project 6 146037921 146040228 + MGP_AJ_P0081130 Rep15 protein_coding protein_coding MGP_AJ_T0076626.1 MGP_AJ_G0030479.1 mouse_genomes_project 6 24857675 24879660 - MGP_AJ_P0076626 Zfp800 protein_coding protein_coding MGP_AJ_T0076627.1 MGP_AJ_G0030479.1 mouse_genomes_project 6 24857988 25019338 - MGP_AJ_P0076627 Zfp800 protein_coding protein_coding MGP_AJ_T0076628.1 MGP_AJ_G0030479.1 mouse_genomes_project 6 24859197 24879672 - MGP_AJ_P0076628 Zfp800 protein_coding protein_coding MGP_AJ_T0076629.1 MGP_AJ_G0030479.1 mouse_genomes_project 6 24861306 24879663 - MGP_AJ_P0076629 Zfp800 protein_coding protein_coding MGP_AJ_T0076630.1 MGP_AJ_G0030479.1 mouse_genomes_project 6 24862233 24879681 - MGP_AJ_P0076630 Zfp800 protein_coding protein_coding MGP_AJ_T0078268.1 MGP_AJ_G0030872.1 mouse_genomes_project 6 79809049 79865611 + MGP_AJ_P0078268 Eva1a protein_coding protein_coding MGP_AJ_T0078269.1 MGP_AJ_G0030872.1 mouse_genomes_project 6 79809624 79866817 + MGP_AJ_P0078269 Eva1a protein_coding protein_coding MGP_AJ_T0078270.1 MGP_AJ_G0030872.1 mouse_genomes_project 6 79809689 79815089 + Eva1a protein_coding processed_transcript MGP_AJ_T0078271.1 MGP_AJ_G0030872.1 mouse_genomes_project 6 79820299 79865876 + MGP_AJ_P0078271 Eva1a protein_coding protein_coding MGP_AJ_T0077895.1 MGP_AJ_G0030787.1 mouse_genomes_project 6 56032843 56122040 - MGP_AJ_P0077895 Fam13a protein_coding protein_coding MGP_AJ_T0077896.1 MGP_AJ_G0030787.1 mouse_genomes_project 6 56036280 56121831 - MGP_AJ_P0077896 Fam13a protein_coding protein_coding MGP_AJ_T0077897.1 MGP_AJ_G0030787.1 mouse_genomes_project 6 56073917 56121913 - Fam13a protein_coding processed_transcript MGP_AJ_T0077898.1 MGP_AJ_G0030787.1 mouse_genomes_project 6 56102926 56121995 - Fam13a protein_coding retained_intron MGP_AJ_T0077899.1 MGP_AJ_G0030787.1 mouse_genomes_project 6 56117625 56121934 - Fam13a protein_coding retained_intron MGP_AJ_T0015475.1 MGP_AJ_G0013570.1 mouse_genomes_project 6 83829424 83830201 + processed_pseudogene processed_pseudogene MGP_AJ_T0010758.1 MGP_AJ_G0008880.1 mouse_genomes_project 6 33095369 33095453 + Mir490 miRNA miRNA MGP_AJ_T0078451.1 MGP_AJ_G0030910.1 mouse_genomes_project 6 81600285 81607870 + MGP_AJ_P0078451 Nagk protein_coding protein_coding MGP_AJ_T0078452.1 MGP_AJ_G0030910.1 mouse_genomes_project 6 81600331 81607868 + MGP_AJ_P0078452 Nagk protein_coding protein_coding MGP_AJ_T0078453.1 MGP_AJ_G0030910.1 mouse_genomes_project 6 81600464 81603912 + Nagk protein_coding retained_intron MGP_AJ_T0078454.1 MGP_AJ_G0030910.1 mouse_genomes_project 6 81600511 81607648 + Nagk protein_coding processed_transcript MGP_AJ_T0078455.1 MGP_AJ_G0030910.1 mouse_genomes_project 6 81600538 81608734 + MGP_AJ_P0078455 Nagk protein_coding protein_coding MGP_AJ_T0078456.1 MGP_AJ_G0030910.1 mouse_genomes_project 6 81601545 81602297 + Nagk protein_coding retained_intron MGP_AJ_T0078457.1 MGP_AJ_G0030910.1 mouse_genomes_project 6 81602322 81605581 + Nagk protein_coding retained_intron MGP_AJ_T0078458.1 MGP_AJ_G0030910.1 mouse_genomes_project 6 81603240 81604656 + Nagk protein_coding retained_intron MGP_AJ_T0078459.1 MGP_AJ_G0030910.1 mouse_genomes_project 6 81603273 81606445 + Nagk protein_coding processed_transcript MGP_AJ_T0078460.1 MGP_AJ_G0030910.1 mouse_genomes_project 6 81607461 81609332 + Nagk protein_coding retained_intron MGP_AJ_T0079126.1 MGP_AJ_G0031045.1 mouse_genomes_project 6 95325168 95339620 - MGP_AJ_P0079126 Lmod3 protein_coding protein_coding MGP_AJ_T0080616.1 MGP_AJ_G0031363.1 mouse_genomes_project 6 131456483 131457467 - MGP_AJ_P0080616 Tas2r136 protein_coding protein_coding MGP_AJ_T0076279.1 MGP_AJ_G0030406.1 mouse_genomes_project 6 1972576 2005632 - MGP_AJ_P0076279 Pon3 protein_coding nonsense_mediated_decay MGP_AJ_T0076280.1 MGP_AJ_G0030406.1 mouse_genomes_project 6 1972576 2005685 - MGP_AJ_P0076280 Pon3 protein_coding protein_coding MGP_AJ_T0076281.1 MGP_AJ_G0030406.1 mouse_genomes_project 6 1982138 2005634 - MGP_AJ_P0076281 Pon3 protein_coding protein_coding MGP_AJ_T0076282.1 MGP_AJ_G0030406.1 mouse_genomes_project 6 1986169 2005613 - Pon3 protein_coding retained_intron MGP_AJ_T0076283.1 MGP_AJ_G0030406.1 mouse_genomes_project 6 1986612 2004265 - Pon3 protein_coding retained_intron MGP_AJ_T0076284.1 MGP_AJ_G0030406.1 mouse_genomes_project 6 2003978 2004966 - Pon3 protein_coding processed_transcript MGP_AJ_T0080601.1 MGP_AJ_G0031349.1 mouse_genomes_project 6 130363809 130364736 - MGP_AJ_P0080601 Tas2r106 protein_coding protein_coding MGP_AJ_T0078097.1 MGP_AJ_G0030836.1 mouse_genomes_project 6 69634831 69683275 + MGP_AJ_P0078097 Polr1a protein_coding nonsense_mediated_decay MGP_AJ_T0078098.1 MGP_AJ_G0030836.1 mouse_genomes_project 6 69634839 69705843 + MGP_AJ_P0078098 Polr1a protein_coding protein_coding MGP_AJ_T0078099.1 MGP_AJ_G0030836.1 mouse_genomes_project 6 69634847 69648749 + Polr1a protein_coding retained_intron MGP_AJ_T0078100.1 MGP_AJ_G0030836.1 mouse_genomes_project 6 69638170 69683160 + Polr1a protein_coding retained_intron MGP_AJ_T0078101.1 MGP_AJ_G0030836.1 mouse_genomes_project 6 69653388 69654006 + Polr1a protein_coding retained_intron MGP_AJ_T0078102.1 MGP_AJ_G0030836.1 mouse_genomes_project 6 69658475 69659067 + Polr1a protein_coding retained_intron MGP_AJ_T0078103.1 MGP_AJ_G0030836.1 mouse_genomes_project 6 69663286 69668788 + Polr1a protein_coding processed_transcript MGP_AJ_T0078104.1 MGP_AJ_G0030836.1 mouse_genomes_project 6 69676484 69682961 + MGP_AJ_P0078104 Polr1a protein_coding nonsense_mediated_decay MGP_AJ_T0078105.1 MGP_AJ_G0030836.1 mouse_genomes_project 6 69676485 69677879 + Polr1a protein_coding retained_intron MGP_AJ_T0078106.1 MGP_AJ_G0030836.1 mouse_genomes_project 6 69685099 69708160 + MGP_AJ_P0078106 Polr1a protein_coding nonsense_mediated_decay MGP_AJ_T0078721.1 MGP_AJ_G0030955.1 mouse_genomes_project 6 85265605 85270937 - MGP_AJ_P0078721 Gkn1 protein_coding protein_coding MGP_AJ_T0001940.1 MGP_AJ_G0001853.1 mouse_genomes_project 6 26188400 26189927 - TEC TEC MGP_AJ_T0015441.1 MGP_AJ_G0013536.1 mouse_genomes_project 6 71526176 71526362 - processed_pseudogene processed_pseudogene MGP_AJ_T0077691.1 MGP_AJ_G0030725.1 mouse_genomes_project 6 50667710 50673069 - MGP_AJ_P0077691 Tril protein_coding protein_coding MGP_AJ_T0080024.1 MGP_AJ_G0031213.1 mouse_genomes_project 6 121596679 121604761 - MGP_AJ_P0080024 Clec4e protein_coding protein_coding MGP_AJ_T0080025.1 MGP_AJ_G0031213.1 mouse_genomes_project 6 121596839 121604760 - Clec4e protein_coding retained_intron MGP_AJ_T0080026.1 MGP_AJ_G0031213.1 mouse_genomes_project 6 121597035 121604761 - Clec4e protein_coding retained_intron MGP_AJ_T0080027.1 MGP_AJ_G0031213.1 mouse_genomes_project 6 121597558 121604761 - Clec4e protein_coding retained_intron MGP_AJ_T0080028.1 MGP_AJ_G0031213.1 mouse_genomes_project 6 121598381 121604761 - MGP_AJ_P0080028 Clec4e protein_coding protein_coding MGP_AJ_T0080029.1 MGP_AJ_G0031213.1 mouse_genomes_project 6 121598584 121604757 - MGP_AJ_P0080029 Clec4e protein_coding nonsense_mediated_decay MGP_AJ_T0080030.1 MGP_AJ_G0031213.1 mouse_genomes_project 6 121602667 121604761 - Clec4e protein_coding processed_transcript MGP_AJ_T0081112.1 MGP_AJ_G0031467.1 mouse_genomes_project 6 145859378 145881790 + MGP_AJ_P0081112 Smco2 protein_coding protein_coding MGP_AJ_T0081113.1 MGP_AJ_G0031467.1 mouse_genomes_project 6 145859431 145866745 + Smco2 protein_coding retained_intron MGP_AJ_T0081114.1 MGP_AJ_G0031467.1 mouse_genomes_project 6 145867430 145874482 + Smco2 protein_coding processed_transcript MGP_AJ_T0081115.1 MGP_AJ_G0031467.1 mouse_genomes_project 6 145872252 145878503 + Smco2 protein_coding processed_transcript MGP_AJ_T0002156.1 MGP_AJ_G0002068.1 mouse_genomes_project 6 132919445 132922319 + TEC TEC MGP_AJ_T0080946.1 MGP_AJ_G0031441.1 mouse_genomes_project 6 141495526 141513292 - MGP_AJ_P0080946 Ldhb protein_coding protein_coding MGP_AJ_T0080947.1 MGP_AJ_G0031441.1 mouse_genomes_project 6 141495617 141506669 - MGP_AJ_P0080947 Ldhb protein_coding protein_coding MGP_AJ_T0080948.1 MGP_AJ_G0031441.1 mouse_genomes_project 6 141500849 141513087 - MGP_AJ_P0080948 Ldhb protein_coding protein_coding MGP_AJ_T0080463.1 MGP_AJ_G0031301.1 mouse_genomes_project 6 127156771 127168320 - MGP_AJ_P0080463 protein_coding protein_coding MGP_AJ_T0080464.1 MGP_AJ_G0031301.1 mouse_genomes_project 6 127156893 127168258 - MGP_AJ_P0080464 protein_coding protein_coding MGP_AJ_T0080465.1 MGP_AJ_G0031301.1 mouse_genomes_project 6 127157258 127168202 - MGP_AJ_P0080465 protein_coding protein_coding MGP_AJ_T0080466.1 MGP_AJ_G0031301.1 mouse_genomes_project 6 127157258 127168299 - MGP_AJ_P0080466 protein_coding protein_coding MGP_AJ_T0080469.1 MGP_AJ_G0031301.1 mouse_genomes_project 6 127164498 127168920 - MGP_AJ_P0080469 protein_coding protein_coding MGP_AJ_T0015237.1 MGP_AJ_G0013332.1 mouse_genomes_project 6 3963544 3964489 + processed_pseudogene processed_pseudogene MGP_AJ_T0008646.1 MGP_AJ_G0006988.1 mouse_genomes_project 6 71241698 71262717 - Gm31747 lincRNA lincRNA MGP_AJ_T0002676.1 MGP_AJ_G0002557.1 mouse_genomes_project 6 37889514 37889986 + MGP_AJ_P0002676 Trbv14 TR_V_gene TR_V_gene MGP_AJ_T0078810.1 MGP_AJ_G0030977.1 mouse_genomes_project 6 86445741 86461199 - MGP_AJ_P0078810 Sec61a1 protein_coding protein_coding MGP_AJ_T0078811.1 MGP_AJ_G0030977.1 mouse_genomes_project 6 86446963 86448536 - Sec61a1 protein_coding processed_transcript MGP_AJ_T0078812.1 MGP_AJ_G0030977.1 mouse_genomes_project 6 86448335 86454703 - Sec61a1 protein_coding processed_transcript MGP_AJ_T0078813.1 MGP_AJ_G0030977.1 mouse_genomes_project 6 86448493 86456181 - Sec61a1 protein_coding retained_intron MGP_AJ_T0078814.1 MGP_AJ_G0030977.1 mouse_genomes_project 6 86450849 86455021 - Sec61a1 protein_coding retained_intron MGP_AJ_T0078815.1 MGP_AJ_G0030977.1 mouse_genomes_project 6 86454310 86455093 - Sec61a1 protein_coding retained_intron MGP_AJ_T0078816.1 MGP_AJ_G0030977.1 mouse_genomes_project 6 86456090 86461067 - Sec61a1 protein_coding retained_intron MGP_AJ_T0078817.1 MGP_AJ_G0030977.1 mouse_genomes_project 6 86456486 86458262 - Sec61a1 protein_coding retained_intron MGP_AJ_T0078818.1 MGP_AJ_G0030977.1 mouse_genomes_project 6 86457607 86461122 - Sec61a1 protein_coding retained_intron MGP_AJ_T0078819.1 MGP_AJ_G0030977.1 mouse_genomes_project 6 86457645 86461085 - Sec61a1 protein_coding processed_transcript MGP_AJ_T0078820.1 MGP_AJ_G0030977.1 mouse_genomes_project 6 86457665 86461197 - Sec61a1 protein_coding retained_intron MGP_AJ_T0078821.1 MGP_AJ_G0030977.1 mouse_genomes_project 6 86460471 86461087 - Sec61a1 protein_coding processed_transcript MGP_AJ_T0080567.1 MGP_AJ_G0031334.1 mouse_genomes_project 6 128529209 128547553 - MGP_AJ_P0080567 Klra4 protein_coding protein_coding MGP_AJ_T0076946.1 MGP_AJ_G0030534.1 mouse_genomes_project 6 31287938 31468023 + MGP_AJ_P0076946 Cald1 protein_coding protein_coding MGP_AJ_T0076947.1 MGP_AJ_G0030534.1 mouse_genomes_project 6 31287950 31446161 + MGP_AJ_P0076947 Cald1 protein_coding protein_coding MGP_AJ_T0076948.1 MGP_AJ_G0030534.1 mouse_genomes_project 6 31287982 31377983 + Cald1 protein_coding retained_intron MGP_AJ_T0076949.1 MGP_AJ_G0030534.1 mouse_genomes_project 6 31287982 31434157 + Cald1 protein_coding retained_intron MGP_AJ_T0076950.1 MGP_AJ_G0030534.1 mouse_genomes_project 6 31288002 31468035 + MGP_AJ_P0076950 Cald1 protein_coding protein_coding MGP_AJ_T0076951.1 MGP_AJ_G0030534.1 mouse_genomes_project 6 31288003 31468035 + MGP_AJ_P0076951 Cald1 protein_coding protein_coding MGP_AJ_T0076952.1 MGP_AJ_G0030534.1 mouse_genomes_project 6 31288058 31352023 + Cald1 protein_coding retained_intron MGP_AJ_T0076953.1 MGP_AJ_G0030534.1 mouse_genomes_project 6 31401397 31468042 + MGP_AJ_P0076953 Cald1 protein_coding protein_coding MGP_AJ_T0076954.1 MGP_AJ_G0030534.1 mouse_genomes_project 6 31401445 31402709 + Cald1 protein_coding retained_intron MGP_AJ_T0076955.1 MGP_AJ_G0030534.1 mouse_genomes_project 6 31401445 31468037 + MGP_AJ_P0076955 Cald1 protein_coding nonsense_mediated_decay MGP_AJ_T0076956.1 MGP_AJ_G0030534.1 mouse_genomes_project 6 31401589 31466263 + MGP_AJ_P0076956 Cald1 protein_coding protein_coding MGP_AJ_T0076957.1 MGP_AJ_G0030534.1 mouse_genomes_project 6 31438535 31448470 + MGP_AJ_P0076957 Cald1 protein_coding protein_coding MGP_AJ_T0076958.1 MGP_AJ_G0030534.1 mouse_genomes_project 6 31438564 31448380 + MGP_AJ_P0076958 Cald1 protein_coding protein_coding MGP_AJ_T0076959.1 MGP_AJ_G0030534.1 mouse_genomes_project 6 31438590 31448380 + MGP_AJ_P0076959 Cald1 protein_coding protein_coding MGP_AJ_T0076960.1 MGP_AJ_G0030534.1 mouse_genomes_project 6 31438969 31454691 + MGP_AJ_P0076960 Cald1 protein_coding protein_coding MGP_AJ_T0076961.1 MGP_AJ_G0030534.1 mouse_genomes_project 6 31440356 31446080 + Cald1 protein_coding retained_intron MGP_AJ_T0076962.1 MGP_AJ_G0030534.1 mouse_genomes_project 6 31455426 31459398 + Cald1 protein_coding retained_intron MGP_AJ_T0076963.1 MGP_AJ_G0030534.1 mouse_genomes_project 6 31457522 31459205 + Cald1 protein_coding retained_intron MGP_AJ_T0011636.1 MGP_AJ_G0009758.1 mouse_genomes_project 6 42793906 42794210 + Gm22839 misc_RNA misc_RNA MGP_AJ_T0008526.1 MGP_AJ_G0006902.1 mouse_genomes_project 6 13843542 13851401 + D830026I12Rik lincRNA lincRNA MGP_AJ_T0008527.1 MGP_AJ_G0006902.1 mouse_genomes_project 6 13843898 13852307 + D830026I12Rik lincRNA lincRNA MGP_AJ_T0008528.1 MGP_AJ_G0006902.1 mouse_genomes_project 6 13843913 13856775 + D830026I12Rik lincRNA lincRNA MGP_AJ_T0015591.1 MGP_AJ_G0013686.1 mouse_genomes_project 6 123745848 123746146 - processed_pseudogene processed_pseudogene MGP_AJ_T0080708.1 MGP_AJ_G0031393.1 mouse_genomes_project 6 134067793 134078410 - MGP_AJ_P0080708 Gsg1 protein_coding protein_coding MGP_AJ_T0080709.1 MGP_AJ_G0031393.1 mouse_genomes_project 6 134067796 134084595 - MGP_AJ_P0080709 Gsg1 protein_coding protein_coding MGP_AJ_T0080710.1 MGP_AJ_G0031393.1 mouse_genomes_project 6 134067796 134084751 - MGP_AJ_P0080710 Gsg1 protein_coding protein_coding MGP_AJ_T0080711.1 MGP_AJ_G0031393.1 mouse_genomes_project 6 134067803 134084776 - MGP_AJ_P0080711 Gsg1 protein_coding protein_coding MGP_AJ_T0010782.1 MGP_AJ_G0008904.1 mouse_genomes_project 6 84478667 84478729 - Gm22184 miRNA miRNA MGP_AJ_T0076750.1 MGP_AJ_G0030504.1 mouse_genomes_project 6 26425178 26425895 + MGP_AJ_P0076750 Ahcyl2 protein_coding protein_coding MGP_AJ_T0076751.1 MGP_AJ_G0030504.1 mouse_genomes_project 6 26425610 26525623 + Ahcyl2 protein_coding retained_intron MGP_AJ_T0076752.1 MGP_AJ_G0030504.1 mouse_genomes_project 6 26425659 26571342 + MGP_AJ_P0076752 Ahcyl2 protein_coding protein_coding MGP_AJ_T0076753.1 MGP_AJ_G0030504.1 mouse_genomes_project 6 26425665 26427811 + Ahcyl2 protein_coding retained_intron MGP_AJ_T0076754.1 MGP_AJ_G0030504.1 mouse_genomes_project 6 26425695 26528817 + MGP_AJ_P0076754 Ahcyl2 protein_coding nonsense_mediated_decay MGP_AJ_T0076755.1 MGP_AJ_G0030504.1 mouse_genomes_project 6 26425705 26571348 + MGP_AJ_P0076755 Ahcyl2 protein_coding protein_coding MGP_AJ_T0076756.1 MGP_AJ_G0030504.1 mouse_genomes_project 6 26457574 26541880 + MGP_AJ_P0076756 Ahcyl2 protein_coding protein_coding MGP_AJ_T0076757.1 MGP_AJ_G0030504.1 mouse_genomes_project 6 26511963 26568247 + MGP_AJ_P0076757 Ahcyl2 protein_coding protein_coding MGP_AJ_T0076758.1 MGP_AJ_G0030504.1 mouse_genomes_project 6 26511970 26521440 + MGP_AJ_P0076758 Ahcyl2 protein_coding protein_coding MGP_AJ_T0076759.1 MGP_AJ_G0030504.1 mouse_genomes_project 6 26511972 26528829 + MGP_AJ_P0076759 Ahcyl2 protein_coding protein_coding MGP_AJ_T0076760.1 MGP_AJ_G0030504.1 mouse_genomes_project 6 26511977 26538786 + MGP_AJ_P0076760 Ahcyl2 protein_coding protein_coding MGP_AJ_T0076761.1 MGP_AJ_G0030504.1 mouse_genomes_project 6 26512094 26525623 + Ahcyl2 protein_coding retained_intron MGP_AJ_T0076762.1 MGP_AJ_G0030504.1 mouse_genomes_project 6 26517582 26571336 + MGP_AJ_P0076762 Ahcyl2 protein_coding protein_coding MGP_AJ_T0076763.1 MGP_AJ_G0030504.1 mouse_genomes_project 6 26517888 26541889 + MGP_AJ_P0076763 Ahcyl2 protein_coding protein_coding MGP_AJ_T0076764.1 MGP_AJ_G0030504.1 mouse_genomes_project 6 26517913 26541882 + MGP_AJ_P0076764 Ahcyl2 protein_coding protein_coding MGP_AJ_T0076765.1 MGP_AJ_G0030504.1 mouse_genomes_project 6 26523590 26529419 + Ahcyl2 protein_coding processed_transcript MGP_AJ_T0076766.1 MGP_AJ_G0030504.1 mouse_genomes_project 6 26528492 26571341 + Ahcyl2 protein_coding retained_intron MGP_AJ_T0076767.1 MGP_AJ_G0030504.1 mouse_genomes_project 6 26534886 26537276 + Ahcyl2 protein_coding retained_intron MGP_AJ_T0076768.1 MGP_AJ_G0030504.1 mouse_genomes_project 6 26552342 26554748 + Ahcyl2 protein_coding retained_intron MGP_AJ_T0076769.1 MGP_AJ_G0030504.1 mouse_genomes_project 6 26554919 26568087 + Ahcyl2 protein_coding retained_intron MGP_AJ_T0076770.1 MGP_AJ_G0030504.1 mouse_genomes_project 6 26561624 26568239 + Ahcyl2 protein_coding processed_transcript MGP_AJ_T0076771.1 MGP_AJ_G0030504.1 mouse_genomes_project 6 26562096 26568183 + Ahcyl2 protein_coding processed_transcript MGP_AJ_T0004967.1 MGP_AJ_G0004260.1 mouse_genomes_project 6 62840643 62851347 - Gm16838 antisense antisense MGP_AJ_T0010781.1 MGP_AJ_G0008903.1 mouse_genomes_project 6 83668574 83668669 - Mir6375 miRNA miRNA MGP_AJ_T0079329.1 MGP_AJ_G0031083.1 mouse_genomes_project 6 111309644 111353545 + MGP_AJ_P0079329 Mtmr14 protein_coding protein_coding MGP_AJ_T0079330.1 MGP_AJ_G0031083.1 mouse_genomes_project 6 111309652 111342694 + MGP_AJ_P0079330 Mtmr14 protein_coding nonsense_mediated_decay MGP_AJ_T0079331.1 MGP_AJ_G0031083.1 mouse_genomes_project 6 111309698 111353540 + MGP_AJ_P0079331 Mtmr14 protein_coding nonsense_mediated_decay MGP_AJ_T0079332.1 MGP_AJ_G0031083.1 mouse_genomes_project 6 111311272 111328963 + MGP_AJ_P0079332 Mtmr14 protein_coding protein_coding MGP_AJ_T0079333.1 MGP_AJ_G0031083.1 mouse_genomes_project 6 111326033 111341409 + MGP_AJ_P0079333 Mtmr14 protein_coding nonsense_mediated_decay MGP_AJ_T0079334.1 MGP_AJ_G0031083.1 mouse_genomes_project 6 111327766 111337940 + MGP_AJ_P0079334 Mtmr14 protein_coding nonsense_mediated_decay MGP_AJ_T0079335.1 MGP_AJ_G0031083.1 mouse_genomes_project 6 111332549 111350088 + MGP_AJ_P0079335 Mtmr14 protein_coding protein_coding MGP_AJ_T0079336.1 MGP_AJ_G0031083.1 mouse_genomes_project 6 111337873 111353072 + MGP_AJ_P0079336 Mtmr14 protein_coding nonsense_mediated_decay MGP_AJ_T0079337.1 MGP_AJ_G0031083.1 mouse_genomes_project 6 111337904 111353349 + MGP_AJ_P0079337 Mtmr14 protein_coding protein_coding MGP_AJ_T0079338.1 MGP_AJ_G0031083.1 mouse_genomes_project 6 111341448 111353240 + MGP_AJ_P0079338 Mtmr14 protein_coding protein_coding MGP_AJ_T0015632.1 MGP_AJ_G0013727.1 mouse_genomes_project 6 130990087 130990304 - processed_pseudogene processed_pseudogene MGP_AJ_T0102680.1 MGP_AJ_G0040422.1 mouse_genomes_project 6 39948508 39949034 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0080837.1 MGP_AJ_G0031418.1 mouse_genomes_project 6 138442817 138451778 - MGP_AJ_P0080837 Rergl protein_coding protein_coding MGP_AJ_T0000134.1 MGP_AJ_G0000102.1 mouse_genomes_project 6 64906694 64907408 + MGP_AJ_P0000134 Igkv1-132 IG_V_gene IG_V_gene MGP_AJ_T0001973.1 MGP_AJ_G0001886.1 mouse_genomes_project 6 42805236 42807470 + TEC TEC MGP_AJ_T0010767.1 MGP_AJ_G0008889.1 mouse_genomes_project 6 49065915 49066000 - Mir196b miRNA miRNA MGP_AJ_T0015255.1 MGP_AJ_G0013350.1 mouse_genomes_project 6 10760262 10760567 - processed_pseudogene processed_pseudogene MGP_AJ_T0077399.1 MGP_AJ_G0030657.1 mouse_genomes_project 6 44589485 44597534 + Zfp398 protein_coding retained_intron MGP_AJ_T0077400.1 MGP_AJ_G0030657.1 mouse_genomes_project 6 44589488 44614406 + MGP_AJ_P0077400 Zfp398 protein_coding protein_coding MGP_AJ_T0077401.1 MGP_AJ_G0030657.1 mouse_genomes_project 6 44589519 44621039 + MGP_AJ_P0077401 Zfp398 protein_coding protein_coding MGP_AJ_T0076594.1 MGP_AJ_G0030470.1 mouse_genomes_project 6 21253305 21305311 - MGP_AJ_P0076594 Wasl protein_coding protein_coding MGP_AJ_T0076595.1 MGP_AJ_G0030470.1 mouse_genomes_project 6 21266225 21267636 - Wasl protein_coding retained_intron MGP_AJ_T0076596.1 MGP_AJ_G0030470.1 mouse_genomes_project 6 21272247 21305290 - MGP_AJ_P0076596 Wasl protein_coding protein_coding MGP_AJ_T0076597.1 MGP_AJ_G0030470.1 mouse_genomes_project 6 21277385 21305240 - Wasl protein_coding processed_transcript MGP_AJ_T0015360.1 MGP_AJ_G0013455.1 mouse_genomes_project 6 55415985 55416354 + processed_pseudogene processed_pseudogene MGP_AJ_T0008530.1 MGP_AJ_G0006904.1 mouse_genomes_project 6 15903106 15933950 - 4930524B17Rik lincRNA lincRNA MGP_AJ_T0079527.1 MGP_AJ_G0031115.1 mouse_genomes_project 6 113314003 113345375 + MGP_AJ_P0079527 Gm17482 protein_coding protein_coding MGP_AJ_T0099078.1 MGP_AJ_G0037051.1 mouse_genomes_project 6 111686177 111690230 + Gm44200 sense_intronic sense_intronic MGP_AJ_T0001949.1 MGP_AJ_G0001862.1 mouse_genomes_project 6 31551420 31552653 + TEC TEC MGP_AJ_T0080154.1 MGP_AJ_G0031242.1 mouse_genomes_project 6 123320498 123326528 - MGP_AJ_P0080154 Gnb3 protein_coding protein_coding MGP_AJ_T0080155.1 MGP_AJ_G0031242.1 mouse_genomes_project 6 123320505 123326210 - Gnb3 protein_coding retained_intron MGP_AJ_T0080156.1 MGP_AJ_G0031242.1 mouse_genomes_project 6 123320937 123322550 - Gnb3 protein_coding processed_transcript MGP_AJ_T0080157.1 MGP_AJ_G0031242.1 mouse_genomes_project 6 123325351 123326336 - Gnb3 protein_coding retained_intron MGP_AJ_T0005029.1 MGP_AJ_G0004297.1 mouse_genomes_project 6 87298616 87323201 + Gm26811 antisense antisense MGP_AJ_T0077595.1 MGP_AJ_G0030703.1 mouse_genomes_project 6 48249372 48281343 + MGP_AJ_P0077595 Nfe2l3 protein_coding protein_coding MGP_AJ_T0077596.1 MGP_AJ_G0030703.1 mouse_genomes_project 6 48249451 48253632 + Nfe2l3 protein_coding processed_transcript MGP_AJ_T0077597.1 MGP_AJ_G0030703.1 mouse_genomes_project 6 48249451 48279451 + MGP_AJ_P0077597 Nfe2l3 protein_coding protein_coding MGP_AJ_T0002002.1 MGP_AJ_G0001915.1 mouse_genomes_project 6 69144293 69147297 - TEC TEC MGP_AJ_T0080305.1 MGP_AJ_G0031266.1 mouse_genomes_project 6 123809497 123819364 + MGP_AJ_P0080305 Scnn1a protein_coding protein_coding MGP_AJ_T0080306.1 MGP_AJ_G0031266.1 mouse_genomes_project 6 123809571 123832945 + MGP_AJ_P0080306 Scnn1a protein_coding nonsense_mediated_decay MGP_AJ_T0080307.1 MGP_AJ_G0031266.1 mouse_genomes_project 6 123809813 123833168 + MGP_AJ_P0080307 Scnn1a protein_coding protein_coding MGP_AJ_T0080308.1 MGP_AJ_G0031266.1 mouse_genomes_project 6 123810173 123833505 + MGP_AJ_P0080308 Scnn1a protein_coding protein_coding MGP_AJ_T0079576.1 MGP_AJ_G0031128.1 mouse_genomes_project 6 113951068 114023148 + MGP_AJ_P0079576 Ift122 protein_coding protein_coding MGP_AJ_T0079577.1 MGP_AJ_G0031128.1 mouse_genomes_project 6 113951128 114023139 + MGP_AJ_P0079577 Ift122 protein_coding protein_coding MGP_AJ_T0079578.1 MGP_AJ_G0031128.1 mouse_genomes_project 6 113951178 114023142 + MGP_AJ_P0079578 Ift122 protein_coding nonsense_mediated_decay MGP_AJ_T0079579.1 MGP_AJ_G0031128.1 mouse_genomes_project 6 113951186 113954517 + Ift122 protein_coding retained_intron MGP_AJ_T0079580.1 MGP_AJ_G0031128.1 mouse_genomes_project 6 113951233 114022779 + MGP_AJ_P0079580 Ift122 protein_coding protein_coding MGP_AJ_T0079581.1 MGP_AJ_G0031128.1 mouse_genomes_project 6 113951243 113973105 + Ift122 protein_coding processed_transcript MGP_AJ_T0079582.1 MGP_AJ_G0031128.1 mouse_genomes_project 6 113975074 113985163 + Ift122 protein_coding processed_transcript MGP_AJ_T0079583.1 MGP_AJ_G0031128.1 mouse_genomes_project 6 113983715 113985168 + Ift122 protein_coding processed_transcript MGP_AJ_T0079584.1 MGP_AJ_G0031128.1 mouse_genomes_project 6 113984947 113986640 + Ift122 protein_coding retained_intron MGP_AJ_T0079585.1 MGP_AJ_G0031128.1 mouse_genomes_project 6 113991595 113997239 + Ift122 protein_coding retained_intron MGP_AJ_T0079586.1 MGP_AJ_G0031128.1 mouse_genomes_project 6 113996729 114023143 + Ift122 protein_coding processed_transcript MGP_AJ_T0079587.1 MGP_AJ_G0031128.1 mouse_genomes_project 6 114000246 114023144 + Ift122 protein_coding retained_intron MGP_AJ_T0015576.1 MGP_AJ_G0013671.1 mouse_genomes_project 6 120902930 120903121 - processed_pseudogene processed_pseudogene MGP_AJ_T0077038.1 MGP_AJ_G0030550.1 mouse_genomes_project 6 34227705 34262021 + MGP_AJ_P0077038 Akr1d1 protein_coding protein_coding MGP_AJ_T0077039.1 MGP_AJ_G0030550.1 mouse_genomes_project 6 34237139 34250727 + Akr1d1 protein_coding processed_transcript MGP_AJ_T0080580.1 MGP_AJ_G0031343.1 mouse_genomes_project 6 129961738 129970897 - MGP_AJ_P0080580 Magohb protein_coding protein_coding MGP_AJ_T0080581.1 MGP_AJ_G0031343.1 mouse_genomes_project 6 129961863 129963224 - Magohb protein_coding retained_intron MGP_AJ_T0080582.1 MGP_AJ_G0031343.1 mouse_genomes_project 6 129961873 129970784 - MGP_AJ_P0080582 Magohb protein_coding nonsense_mediated_decay MGP_AJ_T0080583.1 MGP_AJ_G0031343.1 mouse_genomes_project 6 129961955 129969927 - MGP_AJ_P0080583 Magohb protein_coding protein_coding MGP_AJ_T0080584.1 MGP_AJ_G0031343.1 mouse_genomes_project 6 129962015 129967293 - Magohb protein_coding retained_intron MGP_AJ_T0080585.1 MGP_AJ_G0031343.1 mouse_genomes_project 6 129962051 129970804 - MGP_AJ_P0080585 Magohb protein_coding nonsense_mediated_decay MGP_AJ_T0080586.1 MGP_AJ_G0031343.1 mouse_genomes_project 6 129965489 129970804 - MGP_AJ_P0080586 Magohb protein_coding nonsense_mediated_decay MGP_AJ_T0001918.1 MGP_AJ_G0001831.1 mouse_genomes_project 6 4147788 4150466 + TEC TEC MGP_AJ_T0015419.1 MGP_AJ_G0013514.1 mouse_genomes_project 6 65363568 65363859 - processed_pseudogene processed_pseudogene MGP_AJ_T0101372.1 MGP_AJ_G0039338.1 mouse_genomes_project 6 113908429 113908569 - Snora7a snoRNA snoRNA MGP_AJ_T0080759.1 MGP_AJ_G0031404.1 mouse_genomes_project 6 135740957 135750778 - MGP_AJ_P0080759 Art4 protein_coding protein_coding MGP_AJ_T0000309.1 MGP_AJ_G0000253.1 mouse_genomes_project 6 67371451 67371901 - IG_V_pseudogene IG_V_pseudogene MGP_AJ_T0076697.1 MGP_AJ_G0030494.1 mouse_genomes_project 6 26017636 26021480 - MGP_AJ_P0076697 Opn1sw protein_coding protein_coding MGP_AJ_T0076698.1 MGP_AJ_G0030494.1 mouse_genomes_project 6 26018349 26021398 - MGP_AJ_P0076698 Opn1sw protein_coding protein_coding MGP_AJ_T0076699.1 MGP_AJ_G0030494.1 mouse_genomes_project 6 26019897 26021380 - Opn1sw protein_coding processed_transcript MGP_AJ_T0076700.1 MGP_AJ_G0030494.1 mouse_genomes_project 6 26020339 26029156 - MGP_AJ_P0076700 Opn1sw protein_coding protein_coding MGP_AJ_T0002030.1 MGP_AJ_G0001943.1 mouse_genomes_project 6 78022307 78025859 + TEC TEC MGP_AJ_T0080962.1 MGP_AJ_G0031445.1 mouse_genomes_project 6 141795812 141815487 - MGP_AJ_P0080962 Sult6b2 protein_coding nonsense_mediated_decay MGP_AJ_T0080963.1 MGP_AJ_G0031445.1 mouse_genomes_project 6 141796389 141815451 - MGP_AJ_P0080963 Sult6b2 protein_coding protein_coding MGP_AJ_T0080433.1 MGP_AJ_G0031295.1 mouse_genomes_project 6 126918625 126950264 + MGP_AJ_P0080433 Gm44596 protein_coding protein_coding MGP_AJ_T0102733.1 MGP_AJ_G0040474.1 mouse_genomes_project 6 131713665 131714658 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0010775.1 MGP_AJ_G0008897.1 mouse_genomes_project 6 79676978 79677052 - Mir7232 miRNA miRNA MGP_AJ_T0077290.1 MGP_AJ_G0030621.1 mouse_genomes_project 6 39079998 39081517 + MGP_AJ_P0077290 Zyx protein_coding protein_coding MGP_AJ_T0077291.1 MGP_AJ_G0030621.1 mouse_genomes_project 6 39080148 39081976 + MGP_AJ_P0077291 Zyx protein_coding protein_coding MGP_AJ_T0077292.1 MGP_AJ_G0030621.1 mouse_genomes_project 6 39080196 39088929 + MGP_AJ_P0077292 Zyx protein_coding protein_coding MGP_AJ_T0077293.1 MGP_AJ_G0030621.1 mouse_genomes_project 6 39080237 39088759 + MGP_AJ_P0077293 Zyx protein_coding protein_coding MGP_AJ_T0077294.1 MGP_AJ_G0030621.1 mouse_genomes_project 6 39080401 39088759 + Zyx protein_coding retained_intron MGP_AJ_T0077295.1 MGP_AJ_G0030621.1 mouse_genomes_project 6 39080401 39088759 + MGP_AJ_P0077295 Zyx protein_coding protein_coding MGP_AJ_T0077296.1 MGP_AJ_G0030621.1 mouse_genomes_project 6 39080406 39082133 + Zyx protein_coding processed_transcript MGP_AJ_T0077297.1 MGP_AJ_G0030621.1 mouse_genomes_project 6 39080407 39090580 + MGP_AJ_P0077297 Zyx protein_coding protein_coding MGP_AJ_T0077298.1 MGP_AJ_G0030621.1 mouse_genomes_project 6 39080439 39081433 + MGP_AJ_P0077298 Zyx protein_coding protein_coding MGP_AJ_T0077299.1 MGP_AJ_G0030621.1 mouse_genomes_project 6 39083846 39086404 + Zyx protein_coding processed_transcript MGP_AJ_T0077300.1 MGP_AJ_G0030621.1 mouse_genomes_project 6 39085505 39086628 + Zyx protein_coding processed_transcript MGP_AJ_T0001909.1 MGP_AJ_G0001822.1 mouse_genomes_project 6 1328974 1329911 + TEC TEC MGP_AJ_T0078170.1 MGP_AJ_G0030849.1 mouse_genomes_project 6 70273116 70292216 + MGP_AJ_P0078170 Capg protein_coding protein_coding MGP_AJ_T0078171.1 MGP_AJ_G0030849.1 mouse_genomes_project 6 70273262 70292214 + MGP_AJ_P0078171 Capg protein_coding protein_coding MGP_AJ_T0078172.1 MGP_AJ_G0030849.1 mouse_genomes_project 6 70274515 70284955 + MGP_AJ_P0078172 Capg protein_coding protein_coding MGP_AJ_T0078173.1 MGP_AJ_G0030849.1 mouse_genomes_project 6 70276642 70286473 + MGP_AJ_P0078173 Capg protein_coding protein_coding MGP_AJ_T0078174.1 MGP_AJ_G0030849.1 mouse_genomes_project 6 70277975 70292216 + MGP_AJ_P0078174 Capg protein_coding protein_coding MGP_AJ_T0078175.1 MGP_AJ_G0030849.1 mouse_genomes_project 6 70278134 70286444 + Capg protein_coding retained_intron MGP_AJ_T0078176.1 MGP_AJ_G0030849.1 mouse_genomes_project 6 70278153 70284569 + MGP_AJ_P0078176 Capg protein_coding protein_coding MGP_AJ_T0078177.1 MGP_AJ_G0030849.1 mouse_genomes_project 6 70278160 70284338 + Capg protein_coding retained_intron MGP_AJ_T0078178.1 MGP_AJ_G0030849.1 mouse_genomes_project 6 70278354 70284527 + MGP_AJ_P0078178 Capg protein_coding protein_coding MGP_AJ_T0078179.1 MGP_AJ_G0030849.1 mouse_genomes_project 6 70281641 70286960 + MGP_AJ_P0078179 Capg protein_coding protein_coding MGP_AJ_T0078180.1 MGP_AJ_G0030849.1 mouse_genomes_project 6 70284681 70286550 + Capg protein_coding retained_intron MGP_AJ_T0080938.1 MGP_AJ_G0031438.1 mouse_genomes_project 6 141395739 141410514 + MGP_AJ_P0080938 Golt1b protein_coding protein_coding MGP_AJ_T0080939.1 MGP_AJ_G0031438.1 mouse_genomes_project 6 141395771 141408366 + Golt1b protein_coding processed_transcript MGP_AJ_T0002011.1 MGP_AJ_G0001924.1 mouse_genomes_project 6 70363927 70367336 - TEC TEC MGP_AJ_T0002155.1 MGP_AJ_G0002067.1 mouse_genomes_project 6 132906917 132908746 + TEC TEC MGP_AJ_T0004925.1 MGP_AJ_G0004228.1 mouse_genomes_project 6 30983934 31018748 + Gm14546 antisense antisense MGP_AJ_T0076294.1 MGP_AJ_G0030410.1 mouse_genomes_project 6 2487194 2784918 + MGP_AJ_P0076294 Dync1i1 protein_coding protein_coding MGP_AJ_T0076295.1 MGP_AJ_G0030410.1 mouse_genomes_project 6 2487318 2784909 + MGP_AJ_P0076295 Dync1i1 protein_coding protein_coding MGP_AJ_T0076296.1 MGP_AJ_G0030410.1 mouse_genomes_project 6 2487346 2784918 + MGP_AJ_P0076296 Dync1i1 protein_coding protein_coding MGP_AJ_T0076297.1 MGP_AJ_G0030410.1 mouse_genomes_project 6 2487367 2784918 + MGP_AJ_P0076297 Dync1i1 protein_coding protein_coding MGP_AJ_T0076298.1 MGP_AJ_G0030410.1 mouse_genomes_project 6 2487373 2528214 + MGP_AJ_P0076298 Dync1i1 protein_coding protein_coding MGP_AJ_T0076299.1 MGP_AJ_G0030410.1 mouse_genomes_project 6 2518582 2546062 + MGP_AJ_P0076299 Dync1i1 protein_coding protein_coding MGP_AJ_T0076300.1 MGP_AJ_G0030410.1 mouse_genomes_project 6 2762945 2784666 + Dync1i1 protein_coding retained_intron MGP_AJ_T0002113.1 MGP_AJ_G0002026.1 mouse_genomes_project 6 106541088 106543315 - TEC TEC MGP_AJ_T0002015.1 MGP_AJ_G0001928.1 mouse_genomes_project 6 70630334 70631292 - TEC TEC MGP_AJ_T0008620.1 MGP_AJ_G0006964.1 mouse_genomes_project 6 52018484 52031246 + Gm43995 lincRNA lincRNA MGP_AJ_T0002112.1 MGP_AJ_G0002025.1 mouse_genomes_project 6 101715795 101717289 + TEC TEC MGP_AJ_T0080914.1 MGP_AJ_G0031434.1 mouse_genomes_project 6 141239168 141280668 - MGP_AJ_P0080914 Slco1a5 protein_coding nonsense_mediated_decay MGP_AJ_T0080915.1 MGP_AJ_G0031434.1 mouse_genomes_project 6 141239168 141330356 - MGP_AJ_P0080915 Slco1a5 protein_coding protein_coding MGP_AJ_T0080916.1 MGP_AJ_G0031434.1 mouse_genomes_project 6 141239168 141283952 - MGP_AJ_P0080916 Slco1a5 protein_coding protein_coding MGP_AJ_T0080917.1 MGP_AJ_G0031434.1 mouse_genomes_project 6 141252642 141283952 - Slco1a5 protein_coding retained_intron MGP_AJ_T0080918.1 MGP_AJ_G0031434.1 mouse_genomes_project 6 141260318 141330323 - MGP_AJ_P0080918 Slco1a5 protein_coding protein_coding MGP_AJ_T0018269.1 MGP_AJ_G0015610.1 mouse_genomes_project 6 51129665 51291548 - 9130019P16Rik processed_transcript antisense MGP_AJ_T0018270.1 MGP_AJ_G0015610.1 mouse_genomes_project 6 51162163 51187152 - 9130019P16Rik processed_transcript lincRNA MGP_AJ_T0018271.1 MGP_AJ_G0015610.1 mouse_genomes_project 6 51285924 51290882 - 9130019P16Rik processed_transcript lincRNA MGP_AJ_T0015645.1 MGP_AJ_G0013740.1 mouse_genomes_project 6 132715834 132716503 + processed_pseudogene processed_pseudogene MGP_AJ_T0001935.1 MGP_AJ_G0001848.1 mouse_genomes_project 6 24836915 24843919 - TEC TEC MGP_AJ_T0076631.1 MGP_AJ_G0030480.1 mouse_genomes_project 6 25037865 25043499 - MGP_AJ_P0076631 Gcc1 protein_coding protein_coding MGP_AJ_T0076632.1 MGP_AJ_G0030480.1 mouse_genomes_project 6 25039603 25050169 - MGP_AJ_P0076632 Gcc1 protein_coding protein_coding MGP_AJ_T0076633.1 MGP_AJ_G0030480.1 mouse_genomes_project 6 25041436 25042633 - MGP_AJ_P0076633 Gcc1 protein_coding protein_coding MGP_AJ_T0076634.1 MGP_AJ_G0030480.1 mouse_genomes_project 6 25043054 25045932 - MGP_AJ_P0076634 Gcc1 protein_coding protein_coding MGP_AJ_T0010749.1 MGP_AJ_G0008871.1 mouse_genomes_project 6 26038108 26038251 - Gm44354 miRNA miRNA MGP_AJ_T0015660.1 MGP_AJ_G0013755.1 mouse_genomes_project 6 139741472 139741678 - processed_pseudogene processed_pseudogene MGP_AJ_T0008716.1 MGP_AJ_G0007041.1 mouse_genomes_project 6 111805415 111806344 + Gm44053 lincRNA lincRNA MGP_AJ_T0002009.1 MGP_AJ_G0001922.1 mouse_genomes_project 6 70161632 70163192 + TEC TEC MGP_AJ_T0000162.1 MGP_AJ_G0000123.1 mouse_genomes_project 6 65982698 65983168 + MGP_AJ_P0000162 Igkv10-95 IG_V_gene IG_V_gene MGP_AJ_T0000163.1 MGP_AJ_G0000123.1 mouse_genomes_project 6 65982881 65983168 + MGP_AJ_P0000163 Igkv10-95 IG_V_gene IG_V_gene MGP_AJ_T0015585.1 MGP_AJ_G0013680.1 mouse_genomes_project 6 122277494 122278344 + processed_pseudogene processed_pseudogene MGP_AJ_T0015328.1 MGP_AJ_G0013423.1 mouse_genomes_project 6 44732632 44733506 - processed_pseudogene processed_pseudogene MGP_AJ_T0002731.1 MGP_AJ_G0002603.1 mouse_genomes_project 6 37965682 37965973 + TR_V_pseudogene TR_V_pseudogene MGP_AJ_T0002042.1 MGP_AJ_G0001955.1 mouse_genomes_project 6 81677078 81679292 + TEC TEC MGP_AJ_T0077529.1 MGP_AJ_G0030687.1 mouse_genomes_project 6 45721077 45724870 + MGP_AJ_P0077529 1600015I10Rik protein_coding protein_coding MGP_AJ_T0011653.1 MGP_AJ_G0009775.1 mouse_genomes_project 6 49102419 49102590 + Gm27866 misc_RNA misc_RNA MGP_AJ_T0000169.1 MGP_AJ_G0000128.1 mouse_genomes_project 6 66132323 66132853 - MGP_AJ_P0000169 Igkv4-90 IG_V_gene IG_V_gene MGP_AJ_T0018282.1 MGP_AJ_G0015615.1 mouse_genomes_project 6 64117711 64161507 + E230016M11Rik processed_transcript bidirectional_promoter_lncRNA MGP_AJ_T0018283.1 MGP_AJ_G0015615.1 mouse_genomes_project 6 64117717 64144614 + E230016M11Rik processed_transcript bidirectional_promoter_lncRNA MGP_AJ_T0018284.1 MGP_AJ_G0015615.1 mouse_genomes_project 6 64117767 64160992 + E230016M11Rik processed_transcript retained_intron MGP_AJ_T0018285.1 MGP_AJ_G0015615.1 mouse_genomes_project 6 64157612 64160950 + E230016M11Rik processed_transcript retained_intron MGP_AJ_T0015599.1 MGP_AJ_G0013694.1 mouse_genomes_project 6 125757176 125758547 + processed_pseudogene processed_pseudogene MGP_AJ_T0077517.1 MGP_AJ_G0030685.1 mouse_genomes_project 6 45630828 45632240 + MGP_AJ_P0077517 Tmem176a protein_coding protein_coding MGP_AJ_T0077518.1 MGP_AJ_G0030685.1 mouse_genomes_project 6 45631421 45635779 + MGP_AJ_P0077518 Tmem176a protein_coding protein_coding MGP_AJ_T0077519.1 MGP_AJ_G0030685.1 mouse_genomes_project 6 45631431 45636961 + MGP_AJ_P0077519 Tmem176a protein_coding nonsense_mediated_decay MGP_AJ_T0077520.1 MGP_AJ_G0030685.1 mouse_genomes_project 6 45631457 45635271 + Tmem176a protein_coding retained_intron MGP_AJ_T0077521.1 MGP_AJ_G0030685.1 mouse_genomes_project 6 45631492 45635275 + MGP_AJ_P0077521 Tmem176a protein_coding protein_coding MGP_AJ_T0077522.1 MGP_AJ_G0030685.1 mouse_genomes_project 6 45631679 45634685 + MGP_AJ_P0077522 Tmem176a protein_coding protein_coding MGP_AJ_T0077523.1 MGP_AJ_G0030685.1 mouse_genomes_project 6 45632498 45633502 + MGP_AJ_P0077523 Tmem176a protein_coding protein_coding MGP_AJ_T0015552.1 MGP_AJ_G0013647.1 mouse_genomes_project 6 114296995 114297428 - processed_pseudogene processed_pseudogene MGP_AJ_T0015477.1 MGP_AJ_G0013572.1 mouse_genomes_project 6 84233078 84233285 + processed_pseudogene processed_pseudogene MGP_AJ_T0015297.1 MGP_AJ_G0013392.1 mouse_genomes_project 6 34238872 34239419 + processed_pseudogene processed_pseudogene MGP_AJ_T0077549.1 MGP_AJ_G0030693.1 mouse_genomes_project 6 46041589 46061959 - MGP_AJ_P0077549 Tra2a protein_coding protein_coding MGP_AJ_T0077550.1 MGP_AJ_G0030693.1 mouse_genomes_project 6 46041589 46061960 - MGP_AJ_P0077550 Tra2a protein_coding nonsense_mediated_decay MGP_AJ_T0077551.1 MGP_AJ_G0030693.1 mouse_genomes_project 6 46041593 46061982 - Tra2a protein_coding retained_intron MGP_AJ_T0077552.1 MGP_AJ_G0030693.1 mouse_genomes_project 6 46041593 46061979 - MGP_AJ_P0077552 Tra2a protein_coding protein_coding MGP_AJ_T0077553.1 MGP_AJ_G0030693.1 mouse_genomes_project 6 46058192 46061979 - Tra2a protein_coding retained_intron MGP_AJ_T0010778.1 MGP_AJ_G0008900.1 mouse_genomes_project 6 80882104 80882181 - Mir3470a miRNA miRNA MGP_AJ_T0078694.1 MGP_AJ_G0030951.1 mouse_genomes_project 6 84921888 84944477 + MGP_AJ_P0078694 Nfu1 protein_coding protein_coding MGP_AJ_T0078695.1 MGP_AJ_G0030951.1 mouse_genomes_project 6 84922488 84931725 + Nfu1 protein_coding retained_intron MGP_AJ_T0078696.1 MGP_AJ_G0030951.1 mouse_genomes_project 6 84922488 84944470 + MGP_AJ_P0078696 Nfu1 protein_coding protein_coding MGP_AJ_T0078697.1 MGP_AJ_G0030951.1 mouse_genomes_project 6 84922488 84944475 + MGP_AJ_P0078697 Nfu1 protein_coding protein_coding MGP_AJ_T0078698.1 MGP_AJ_G0030951.1 mouse_genomes_project 6 84922532 84925040 + Nfu1 protein_coding retained_intron MGP_AJ_T0078699.1 MGP_AJ_G0030951.1 mouse_genomes_project 6 84922541 84929457 + Nfu1 protein_coding retained_intron MGP_AJ_T0078700.1 MGP_AJ_G0030951.1 mouse_genomes_project 6 84922541 84939222 + MGP_AJ_P0078700 Nfu1 protein_coding protein_coding MGP_AJ_T0078701.1 MGP_AJ_G0030951.1 mouse_genomes_project 6 84922655 84941570 + Nfu1 protein_coding processed_transcript MGP_AJ_T0078702.1 MGP_AJ_G0030951.1 mouse_genomes_project 6 84941030 84944477 + Nfu1 protein_coding retained_intron MGP_AJ_T0101365.1 MGP_AJ_G0039331.1 mouse_genomes_project 6 91983873 91984009 + Gm22840 snoRNA snoRNA MGP_AJ_T0018253.1 MGP_AJ_G0015606.1 mouse_genomes_project 6 49001181 49004980 + Hoxaas2 processed_transcript antisense MGP_AJ_T0018254.1 MGP_AJ_G0015606.1 mouse_genomes_project 6 49002047 49005093 + Hoxaas2 processed_transcript retained_intron MGP_AJ_T0018255.1 MGP_AJ_G0015606.1 mouse_genomes_project 6 49004039 49005093 + Hoxaas2 processed_transcript processed_transcript MGP_AJ_T0010796.1 MGP_AJ_G0008918.1 mouse_genomes_project 6 111787402 111787460 + Mir7042 miRNA miRNA MGP_AJ_T0078937.1 MGP_AJ_G0031006.1 mouse_genomes_project 6 88494567 88507229 + MGP_AJ_P0078937 Klf15 protein_coding protein_coding MGP_AJ_T0078938.1 MGP_AJ_G0031006.1 mouse_genomes_project 6 88494665 88507229 + MGP_AJ_P0078938 Klf15 protein_coding protein_coding MGP_AJ_T0078939.1 MGP_AJ_G0031006.1 mouse_genomes_project 6 88497295 88507226 + MGP_AJ_P0078939 Klf15 protein_coding protein_coding MGP_AJ_T0078940.1 MGP_AJ_G0031006.1 mouse_genomes_project 6 88498391 88507226 + MGP_AJ_P0078940 Klf15 protein_coding protein_coding MGP_AJ_T0078941.1 MGP_AJ_G0031006.1 mouse_genomes_project 6 88499109 88507212 + MGP_AJ_P0078941 Klf15 protein_coding protein_coding MGP_AJ_T0079878.1 MGP_AJ_G0031179.1 mouse_genomes_project 6 118993274 119024635 + Bcl2l13 protein_coding retained_intron MGP_AJ_T0079879.1 MGP_AJ_G0031179.1 mouse_genomes_project 6 118993274 119022383 + MGP_AJ_P0079879 Bcl2l13 protein_coding protein_coding MGP_AJ_T0079880.1 MGP_AJ_G0031179.1 mouse_genomes_project 6 118993288 119033773 + MGP_AJ_P0079880 Bcl2l13 protein_coding protein_coding MGP_AJ_T0079881.1 MGP_AJ_G0031179.1 mouse_genomes_project 6 118993300 119050113 + MGP_AJ_P0079881 Bcl2l13 protein_coding protein_coding MGP_AJ_T0101329.1 MGP_AJ_G0039295.1 mouse_genomes_project 6 21825255 21825378 - Gm22529 snoRNA snoRNA MGP_AJ_T0004991.1 MGP_AJ_G0004276.1 mouse_genomes_project 6 81365570 81390793 + Gm21284 antisense antisense MGP_AJ_T0100077.1 MGP_AJ_G0038043.1 mouse_genomes_project 6 23061707 23061847 - Gm24691 snRNA snRNA MGP_AJ_T0001907.1 MGP_AJ_G0001820.1 mouse_genomes_project 6 1224750 1226542 + TEC TEC MGP_AJ_T0015530.1 MGP_AJ_G0013625.1 mouse_genomes_project 6 107507255 107507880 - processed_pseudogene processed_pseudogene MGP_AJ_T0080041.1 MGP_AJ_G0031222.1 mouse_genomes_project 6 122734367 122744306 - MGP_AJ_P0080041 1700013D24Rik protein_coding protein_coding MGP_AJ_T0080042.1 MGP_AJ_G0031222.1 mouse_genomes_project 6 122734372 122744289 - 1700013D24Rik protein_coding lincRNA MGP_AJ_T0005085.1 MGP_AJ_G0004339.1 mouse_genomes_project 6 125645639 125648453 + Gm43126 antisense antisense MGP_AJ_T0080062.1 MGP_AJ_G0031228.1 mouse_genomes_project 6 123100298 123126177 - MGP_AJ_P0080062 protein_coding protein_coding MGP_AJ_T0079696.1 MGP_AJ_G0031150.1 mouse_genomes_project 6 116042597 116046688 - MGP_AJ_P0079696 Fxyd4 protein_coding protein_coding MGP_AJ_T0079697.1 MGP_AJ_G0031150.1 mouse_genomes_project 6 116042598 116046331 - MGP_AJ_P0079697 Fxyd4 protein_coding protein_coding MGP_AJ_T0079698.1 MGP_AJ_G0031150.1 mouse_genomes_project 6 116042598 116046331 - MGP_AJ_P0079698 Fxyd4 protein_coding protein_coding MGP_AJ_T0079699.1 MGP_AJ_G0031150.1 mouse_genomes_project 6 116042598 116046331 - MGP_AJ_P0079699 Fxyd4 protein_coding protein_coding MGP_AJ_T0079700.1 MGP_AJ_G0031150.1 mouse_genomes_project 6 116042598 116046331 - MGP_AJ_P0079700 Fxyd4 protein_coding protein_coding MGP_AJ_T0079701.1 MGP_AJ_G0031150.1 mouse_genomes_project 6 116042767 116046331 - MGP_AJ_P0079701 Fxyd4 protein_coding protein_coding MGP_AJ_T0079702.1 MGP_AJ_G0031150.1 mouse_genomes_project 6 116043872 116046331 - Fxyd4 protein_coding retained_intron MGP_AJ_T0079703.1 MGP_AJ_G0031150.1 mouse_genomes_project 6 116043879 116044949 - Fxyd4 protein_coding retained_intron MGP_AJ_T0079704.1 MGP_AJ_G0031150.1 mouse_genomes_project 6 116043881 116046331 - Fxyd4 protein_coding retained_intron MGP_AJ_T0005119.1 MGP_AJ_G0004367.1 mouse_genomes_project 6 143761257 143762600 + Sox5os5 antisense antisense MGP_AJ_T0008647.1 MGP_AJ_G0006989.1 mouse_genomes_project 6 73631496 73639064 - Gm44113 lincRNA lincRNA MGP_AJ_T0018316.1 MGP_AJ_G0015627.1 mouse_genomes_project 6 128106623 128108490 - 1700101I11Rik processed_transcript TEC MGP_AJ_T0018317.1 MGP_AJ_G0015627.1 mouse_genomes_project 6 128106767 128107958 - 1700101I11Rik processed_transcript antisense MGP_AJ_T0079600.1 MGP_AJ_G0031131.1 mouse_genomes_project 6 114051284 114092194 - MGP_AJ_P0079600 Plxnd1 protein_coding protein_coding MGP_AJ_T0079601.1 MGP_AJ_G0031131.1 mouse_genomes_project 6 114052107 114053312 - Plxnd1 protein_coding retained_intron MGP_AJ_T0079602.1 MGP_AJ_G0031131.1 mouse_genomes_project 6 114052273 114052838 - Plxnd1 protein_coding retained_intron MGP_AJ_T0079603.1 MGP_AJ_G0031131.1 mouse_genomes_project 6 114055036 114056501 - Plxnd1 protein_coding retained_intron MGP_AJ_T0079604.1 MGP_AJ_G0031131.1 mouse_genomes_project 6 114063435 114065899 - MGP_AJ_P0079604 Plxnd1 protein_coding protein_coding MGP_AJ_T0076408.1 MGP_AJ_G0030435.1 mouse_genomes_project 6 10535693 10539477 - MGP_AJ_P0076408 2610001J05Rik protein_coding protein_coding MGP_AJ_T0076409.1 MGP_AJ_G0030435.1 mouse_genomes_project 6 10537758 10539425 - MGP_AJ_P0076409 2610001J05Rik protein_coding protein_coding MGP_AJ_T0076410.1 MGP_AJ_G0030435.1 mouse_genomes_project 6 10537818 10539424 - MGP_AJ_P0076410 2610001J05Rik protein_coding protein_coding MGP_AJ_T0076411.1 MGP_AJ_G0030435.1 mouse_genomes_project 6 10537959 10539424 - MGP_AJ_P0076411 2610001J05Rik protein_coding protein_coding MGP_AJ_T0002140.1 MGP_AJ_G0002052.1 mouse_genomes_project 6 125841999 125844225 + TEC TEC MGP_AJ_T0081091.1 MGP_AJ_G0031463.1 mouse_genomes_project 6 145626277 145659872 - MGP_AJ_P0081091 Tm7sf3 protein_coding protein_coding MGP_AJ_T0081092.1 MGP_AJ_G0031463.1 mouse_genomes_project 6 145634811 145659773 - MGP_AJ_P0081092 Tm7sf3 protein_coding nonsense_mediated_decay MGP_AJ_T0081093.1 MGP_AJ_G0031463.1 mouse_genomes_project 6 145645734 145667662 - Tm7sf3 protein_coding processed_transcript MGP_AJ_T0081094.1 MGP_AJ_G0031463.1 mouse_genomes_project 6 145647733 145667672 - Tm7sf3 protein_coding processed_transcript MGP_AJ_T0008573.1 MGP_AJ_G0006934.1 mouse_genomes_project 6 32257659 32262240 - Gm42931 lincRNA lincRNA MGP_AJ_T0076683.1 MGP_AJ_G0030492.1 mouse_genomes_project 6 25960845 25968434 + Fam71f1 protein_coding processed_transcript MGP_AJ_T0076684.1 MGP_AJ_G0030492.1 mouse_genomes_project 6 25960845 25977727 + MGP_AJ_P0076684 Fam71f1 protein_coding protein_coding MGP_AJ_T0076685.1 MGP_AJ_G0030492.1 mouse_genomes_project 6 25960862 25977562 + MGP_AJ_P0076685 Fam71f1 protein_coding nonsense_mediated_decay MGP_AJ_T0076686.1 MGP_AJ_G0030492.1 mouse_genomes_project 6 25960862 25977562 + MGP_AJ_P0076686 Fam71f1 protein_coding protein_coding MGP_AJ_T0076687.1 MGP_AJ_G0030492.1 mouse_genomes_project 6 25960904 25977562 + MGP_AJ_P0076687 Fam71f1 protein_coding protein_coding MGP_AJ_T0101359.1 MGP_AJ_G0039325.1 mouse_genomes_project 6 79580763 79580881 + Gm22530 snoRNA snoRNA MGP_AJ_T0008555.1 MGP_AJ_G0006920.1 mouse_genomes_project 6 28263713 28265443 + Gm6117 lincRNA lincRNA MGP_AJ_T0080467.1 MGP_AJ_G0031302.1 mouse_genomes_project 6 127163383 127168310 - MGP_AJ_P0080467 protein_coding protein_coding MGP_AJ_T0080470.1 MGP_AJ_G0031302.1 mouse_genomes_project 6 127165547 127168920 - MGP_AJ_P0080470 protein_coding protein_coding MGP_AJ_T0102045.1 MGP_AJ_G0039837.1 mouse_genomes_project 6 122334728 122396441 - transcribed_unprocessed_pseudogene processed_transcript MGP_AJ_T0102046.1 MGP_AJ_G0039837.1 mouse_genomes_project 6 122356941 122377389 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_AJ_T0015584.1 MGP_AJ_G0013679.1 mouse_genomes_project 6 122277494 122278341 + processed_pseudogene processed_pseudogene MGP_AJ_T0102685.1 MGP_AJ_G0040427.1 mouse_genomes_project 6 54977809 54977943 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0079380.1 MGP_AJ_G0031090.1 mouse_genomes_project 6 111466432 111476643 + MGP_AJ_P0079380 Ttll3 protein_coding protein_coding MGP_AJ_T0079381.1 MGP_AJ_G0031090.1 mouse_genomes_project 6 111467909 111476043 + Ttll3 protein_coding processed_transcript MGP_AJ_T0079382.1 MGP_AJ_G0031090.1 mouse_genomes_project 6 111469630 111491760 + MGP_AJ_P0079382 Ttll3 protein_coding protein_coding MGP_AJ_T0079383.1 MGP_AJ_G0031090.1 mouse_genomes_project 6 111469669 111491742 + MGP_AJ_P0079383 Ttll3 protein_coding protein_coding MGP_AJ_T0079384.1 MGP_AJ_G0031090.1 mouse_genomes_project 6 111470332 111491756 + MGP_AJ_P0079384 Ttll3 protein_coding protein_coding MGP_AJ_T0079385.1 MGP_AJ_G0031090.1 mouse_genomes_project 6 111470349 111487075 + MGP_AJ_P0079385 Ttll3 protein_coding nonsense_mediated_decay MGP_AJ_T0079386.1 MGP_AJ_G0031090.1 mouse_genomes_project 6 111474930 111491735 + Ttll3 protein_coding retained_intron MGP_AJ_T0079387.1 MGP_AJ_G0031090.1 mouse_genomes_project 6 111486381 111487075 + Ttll3 protein_coding processed_transcript MGP_AJ_T0079388.1 MGP_AJ_G0031090.1 mouse_genomes_project 6 111490003 111491731 + Ttll3 protein_coding processed_transcript MGP_AJ_T0002734.1 MGP_AJ_G0002606.1 mouse_genomes_project 6 38011424 38011701 + TR_V_pseudogene TR_V_pseudogene MGP_AJ_T0015321.1 MGP_AJ_G0013416.1 mouse_genomes_project 6 41568646 41569543 + processed_pseudogene processed_pseudogene MGP_AJ_T0080620.1 MGP_AJ_G0031367.1 mouse_genomes_project 6 131570541 131571471 + MGP_AJ_P0080620 Tas2r113 protein_coding protein_coding MGP_AJ_T0015449.1 MGP_AJ_G0013544.1 mouse_genomes_project 6 75798478 75799498 - processed_pseudogene processed_pseudogene MGP_AJ_T0077430.1 MGP_AJ_G0030664.1 mouse_genomes_project 6 45218192 45234520 - MGP_AJ_P0077430 Zfp467 protein_coding protein_coding MGP_AJ_T0077431.1 MGP_AJ_G0030664.1 mouse_genomes_project 6 45218192 45235869 - MGP_AJ_P0077431 Zfp467 protein_coding protein_coding MGP_AJ_T0077432.1 MGP_AJ_G0030664.1 mouse_genomes_project 6 45218192 45235972 - MGP_AJ_P0077432 Zfp467 protein_coding protein_coding MGP_AJ_T0077433.1 MGP_AJ_G0030664.1 mouse_genomes_project 6 45224661 45235778 - MGP_AJ_P0077433 Zfp467 protein_coding protein_coding MGP_AJ_T0077434.1 MGP_AJ_G0030664.1 mouse_genomes_project 6 45227124 45236230 - MGP_AJ_P0077434 Zfp467 protein_coding protein_coding MGP_AJ_T0077435.1 MGP_AJ_G0030664.1 mouse_genomes_project 6 45227124 45235491 - MGP_AJ_P0077435 Zfp467 protein_coding protein_coding MGP_AJ_T0077436.1 MGP_AJ_G0030664.1 mouse_genomes_project 6 45227124 45235485 - MGP_AJ_P0077436 Zfp467 protein_coding protein_coding MGP_AJ_T0077437.1 MGP_AJ_G0030664.1 mouse_genomes_project 6 45227147 45235847 - MGP_AJ_P0077437 Zfp467 protein_coding protein_coding MGP_AJ_T0077438.1 MGP_AJ_G0030664.1 mouse_genomes_project 6 45228141 45236098 - MGP_AJ_P0077438 Zfp467 protein_coding protein_coding MGP_AJ_T0077439.1 MGP_AJ_G0030664.1 mouse_genomes_project 6 45229899 45235763 - MGP_AJ_P0077439 Zfp467 protein_coding nonsense_mediated_decay MGP_AJ_T0077440.1 MGP_AJ_G0030664.1 mouse_genomes_project 6 45233246 45235899 - Zfp467 protein_coding retained_intron MGP_AJ_T0100095.1 MGP_AJ_G0038061.1 mouse_genomes_project 6 68750620 68750775 - Gm23485 snRNA snRNA MGP_AJ_T0010772.1 MGP_AJ_G0008894.1 mouse_genomes_project 6 67712205 67712315 - Gm24096 miRNA miRNA MGP_AJ_T0000189.1 MGP_AJ_G0000143.1 mouse_genomes_project 6 67549776 67550289 - MGP_AJ_P0000189 Igkv18-36 IG_V_gene IG_V_gene MGP_AJ_T0000190.1 MGP_AJ_G0000143.1 mouse_genomes_project 6 67549776 67550289 - MGP_AJ_P0000190 Igkv18-36 IG_V_gene IG_V_gene MGP_AJ_T0015522.1 MGP_AJ_G0013617.1 mouse_genomes_project 6 105152883 105153337 - processed_pseudogene processed_pseudogene MGP_AJ_T0002065.1 MGP_AJ_G0001978.1 mouse_genomes_project 6 85970906 85972920 - TEC TEC MGP_AJ_T0008727.1 MGP_AJ_G0007050.1 mouse_genomes_project 6 116358928 116360686 - 1700069P05Rik lincRNA lincRNA MGP_AJ_T0078107.1 MGP_AJ_G0030837.1 mouse_genomes_project 6 69817460 69873134 + MGP_AJ_P0078107 St3gal5 protein_coding protein_coding MGP_AJ_T0078108.1 MGP_AJ_G0030837.1 mouse_genomes_project 6 69817491 69873134 + MGP_AJ_P0078108 St3gal5 protein_coding protein_coding MGP_AJ_T0078109.1 MGP_AJ_G0030837.1 mouse_genomes_project 6 69817625 69865737 + MGP_AJ_P0078109 St3gal5 protein_coding protein_coding MGP_AJ_T0078110.1 MGP_AJ_G0030837.1 mouse_genomes_project 6 69835736 69861409 + MGP_AJ_P0078110 St3gal5 protein_coding protein_coding MGP_AJ_T0011648.1 MGP_AJ_G0009770.1 mouse_genomes_project 6 49084150 49084354 + Gm27454 misc_RNA misc_RNA MGP_AJ_T0015622.1 MGP_AJ_G0013717.1 mouse_genomes_project 6 129610430 129610592 - processed_pseudogene processed_pseudogene MGP_AJ_T0002132.1 MGP_AJ_G0002044.1 mouse_genomes_project 6 118734318 118734790 - TEC TEC MGP_AJ_T0002035.1 MGP_AJ_G0001948.1 mouse_genomes_project 6 78572700 78575365 + TEC TEC MGP_AJ_T0005068.1 MGP_AJ_G0004323.1 mouse_genomes_project 6 117693651 117700765 + Gm44317 antisense antisense MGP_AJ_T0079938.1 MGP_AJ_G0031191.1 mouse_genomes_project 6 120346735 120353182 - MGP_AJ_P0079938 unknown_likely_coding unknown_likely_coding MGP_AJ_T0078391.1 MGP_AJ_G0030897.1 mouse_genomes_project 6 81099739 81111630 - MGP_AJ_P0078391 Mthfd2 protein_coding protein_coding MGP_AJ_T0078392.1 MGP_AJ_G0030897.1 mouse_genomes_project 6 81100450 81111577 - MGP_AJ_P0078392 Mthfd2 protein_coding nonsense_mediated_decay MGP_AJ_T0078393.1 MGP_AJ_G0030897.1 mouse_genomes_project 6 81100606 81103352 - Mthfd2 protein_coding retained_intron MGP_AJ_T0078394.1 MGP_AJ_G0030897.1 mouse_genomes_project 6 81103378 81104591 - Mthfd2 protein_coding retained_intron MGP_AJ_T0078395.1 MGP_AJ_G0030897.1 mouse_genomes_project 6 81103596 81105636 - Mthfd2 protein_coding retained_intron MGP_AJ_T0078396.1 MGP_AJ_G0030897.1 mouse_genomes_project 6 81105387 81106440 - Mthfd2 protein_coding retained_intron MGP_AJ_T0078397.1 MGP_AJ_G0030897.1 mouse_genomes_project 6 81105905 81120234 - MGP_AJ_P0078397 Mthfd2 protein_coding protein_coding MGP_AJ_T0080007.1 MGP_AJ_G0031208.1 mouse_genomes_project 6 121377798 121398909 + MGP_AJ_P0080007 Clec4b1 protein_coding protein_coding MGP_AJ_T0080008.1 MGP_AJ_G0031208.1 mouse_genomes_project 6 121377834 121398920 + MGP_AJ_P0080008 Clec4b1 protein_coding protein_coding MGP_AJ_T0008652.1 MGP_AJ_G0006994.1 mouse_genomes_project 6 79764835 79765826 - Gm44202 lincRNA lincRNA MGP_AJ_T0015299.1 MGP_AJ_G0013394.1 mouse_genomes_project 6 34572627 34573352 - processed_pseudogene processed_pseudogene MGP_AJ_T0015620.1 MGP_AJ_G0013715.1 mouse_genomes_project 6 129130649 129131795 - processed_pseudogene processed_pseudogene MGP_AJ_T0101376.1 MGP_AJ_G0039342.1 mouse_genomes_project 6 121750448 121750580 - Gm22833 snoRNA snoRNA MGP_AJ_T0076891.1 MGP_AJ_G0030522.1 mouse_genomes_project 6 28202178 28252316 - MGP_AJ_P0076891 Podxl protein_coding protein_coding MGP_AJ_T0076892.1 MGP_AJ_G0030522.1 mouse_genomes_project 6 28205678 28206998 - Podxl protein_coding processed_transcript MGP_AJ_T0100078.1 MGP_AJ_G0038044.1 mouse_genomes_project 6 25744375 25744541 - Gm25589 snRNA snRNA MGP_AJ_T0080558.1 MGP_AJ_G0031330.1 mouse_genomes_project 6 128289778 128302578 - MGP_AJ_P0080558 Klri2 protein_coding protein_coding MGP_AJ_T0079485.1 MGP_AJ_G0031110.1 mouse_genomes_project 6 112483164 112569001 + MGP_AJ_P0079485 Hrh1 protein_coding protein_coding MGP_AJ_T0079486.1 MGP_AJ_G0031110.1 mouse_genomes_project 6 112483314 112565573 + MGP_AJ_P0079486 Hrh1 protein_coding protein_coding MGP_AJ_T0079487.1 MGP_AJ_G0031110.1 mouse_genomes_project 6 112488894 112568177 + MGP_AJ_P0079487 Hrh1 protein_coding protein_coding MGP_AJ_T0079488.1 MGP_AJ_G0031110.1 mouse_genomes_project 6 112489053 112568111 + MGP_AJ_P0079488 Hrh1 protein_coding protein_coding MGP_AJ_T0079489.1 MGP_AJ_G0031110.1 mouse_genomes_project 6 112543686 112568175 + MGP_AJ_P0079489 Hrh1 protein_coding protein_coding MGP_AJ_T0004968.1 MGP_AJ_G0004261.1 mouse_genomes_project 6 64079384 64080622 - antisense antisense MGP_AJ_T0002088.1 MGP_AJ_G0002001.1 mouse_genomes_project 6 91159829 91161292 + TEC TEC MGP_AJ_T0015296.1 MGP_AJ_G0013391.1 mouse_genomes_project 6 33316296 33316724 - processed_pseudogene processed_pseudogene MGP_AJ_T0015456.1 MGP_AJ_G0013551.1 mouse_genomes_project 6 80005413 80006085 + processed_pseudogene processed_pseudogene MGP_AJ_T0077743.1 MGP_AJ_G0030736.1 mouse_genomes_project 6 51849024 51860511 - MGP_AJ_P0077743 Ggct protein_coding protein_coding MGP_AJ_T0077744.1 MGP_AJ_G0030736.1 mouse_genomes_project 6 51852117 51860268 - Ggct protein_coding processed_transcript MGP_AJ_T0077745.1 MGP_AJ_G0030736.1 mouse_genomes_project 6 51852401 51860422 - MGP_AJ_P0077745 Ggct protein_coding nonsense_mediated_decay MGP_AJ_T0077746.1 MGP_AJ_G0030736.1 mouse_genomes_project 6 51852425 51860424 - MGP_AJ_P0077746 Ggct protein_coding protein_coding MGP_AJ_T0077747.1 MGP_AJ_G0030736.1 mouse_genomes_project 6 51852950 51860424 - Ggct protein_coding retained_intron MGP_AJ_T0077748.1 MGP_AJ_G0030736.1 mouse_genomes_project 6 51856686 51860185 - Ggct protein_coding retained_intron MGP_AJ_T0008627.1 MGP_AJ_G0006970.1 mouse_genomes_project 6 57584398 57584888 + Gm44410 lincRNA lincRNA MGP_AJ_T0005073.1 MGP_AJ_G0004328.1 mouse_genomes_project 6 121163554 121170770 - Gm26826 antisense antisense MGP_AJ_T0080699.1 MGP_AJ_G0031391.1 mouse_genomes_project 6 133971184 133999992 - MGP_AJ_P0080699 Hebp1 protein_coding protein_coding MGP_AJ_T0080700.1 MGP_AJ_G0031391.1 mouse_genomes_project 6 133984822 133999969 - Hebp1 protein_coding processed_transcript MGP_AJ_T0080701.1 MGP_AJ_G0031391.1 mouse_genomes_project 6 133987245 134030141 - Hebp1 protein_coding processed_transcript MGP_AJ_T0080702.1 MGP_AJ_G0031391.1 mouse_genomes_project 6 133997339 133999912 - Hebp1 protein_coding retained_intron MGP_AJ_T0015417.1 MGP_AJ_G0013512.1 mouse_genomes_project 6 64942781 64943860 - processed_pseudogene processed_pseudogene MGP_AJ_T0080367.1 MGP_AJ_G0031280.1 mouse_genomes_project 6 125464356 125492332 + D6Wsu163e protein_coding retained_intron MGP_AJ_T0080368.1 MGP_AJ_G0031280.1 mouse_genomes_project 6 125464360 125500136 + MGP_AJ_P0080368 D6Wsu163e protein_coding protein_coding MGP_AJ_T0080369.1 MGP_AJ_G0031280.1 mouse_genomes_project 6 125464365 125467074 + D6Wsu163e protein_coding retained_intron MGP_AJ_T0080370.1 MGP_AJ_G0031280.1 mouse_genomes_project 6 125464369 125471940 + D6Wsu163e protein_coding retained_intron MGP_AJ_T0080371.1 MGP_AJ_G0031280.1 mouse_genomes_project 6 125464423 125469261 + MGP_AJ_P0080371 D6Wsu163e protein_coding protein_coding MGP_AJ_T0080372.1 MGP_AJ_G0031280.1 mouse_genomes_project 6 125474734 125479537 + D6Wsu163e protein_coding retained_intron MGP_AJ_T0080373.1 MGP_AJ_G0031280.1 mouse_genomes_project 6 125497612 125498807 + D6Wsu163e protein_coding retained_intron MGP_AJ_T0002190.1 MGP_AJ_G0002102.1 mouse_genomes_project 6 148592474 148595727 + TEC TEC MGP_AJ_T0015411.1 MGP_AJ_G0013506.1 mouse_genomes_project 6 64517213 64517795 - processed_pseudogene processed_pseudogene MGP_AJ_T0076311.1 MGP_AJ_G0030414.1 mouse_genomes_project 6 3649091 3653375 - MGP_AJ_P0076311 Dlx5 protein_coding protein_coding MGP_AJ_T0076312.1 MGP_AJ_G0030414.1 mouse_genomes_project 6 3649091 3653358 - MGP_AJ_P0076312 Dlx5 protein_coding protein_coding MGP_AJ_T0076313.1 MGP_AJ_G0030414.1 mouse_genomes_project 6 3651979 3653372 - Dlx5 protein_coding retained_intron MGP_AJ_T0004937.1 MGP_AJ_G0004238.1 mouse_genomes_project 6 36947391 36953335 - Gm26807 antisense antisense MGP_AJ_T0081192.1 MGP_AJ_G0031481.1 mouse_genomes_project 6 147915053 147942356 - MGP_AJ_P0081192 Fam60a protein_coding protein_coding MGP_AJ_T0081193.1 MGP_AJ_G0031481.1 mouse_genomes_project 6 147916761 147940701 - MGP_AJ_P0081193 Fam60a protein_coding protein_coding MGP_AJ_T0081194.1 MGP_AJ_G0031481.1 mouse_genomes_project 6 147917052 147942299 - MGP_AJ_P0081194 Fam60a protein_coding nonsense_mediated_decay MGP_AJ_T0081195.1 MGP_AJ_G0031481.1 mouse_genomes_project 6 147920152 147942044 - MGP_AJ_P0081195 Fam60a protein_coding protein_coding MGP_AJ_T0081196.1 MGP_AJ_G0031481.1 mouse_genomes_project 6 147920270 147940612 - MGP_AJ_P0081196 Fam60a protein_coding nonsense_mediated_decay MGP_AJ_T0081197.1 MGP_AJ_G0031481.1 mouse_genomes_project 6 147922801 147942245 - MGP_AJ_P0081197 Fam60a protein_coding protein_coding MGP_AJ_T0081198.1 MGP_AJ_G0031481.1 mouse_genomes_project 6 147940278 147942332 - Fam60a protein_coding processed_transcript MGP_AJ_T0080295.1 MGP_AJ_G0031263.1 mouse_genomes_project 6 123718566 123722974 - MGP_AJ_P0080295 Cd27 protein_coding protein_coding MGP_AJ_T0080296.1 MGP_AJ_G0031263.1 mouse_genomes_project 6 123719067 123722958 - MGP_AJ_P0080296 Cd27 protein_coding protein_coding MGP_AJ_T0080297.1 MGP_AJ_G0031263.1 mouse_genomes_project 6 123719138 123722917 - MGP_AJ_P0080297 Cd27 protein_coding protein_coding MGP_AJ_T0080298.1 MGP_AJ_G0031263.1 mouse_genomes_project 6 123719472 123720731 - Cd27 protein_coding retained_intron MGP_AJ_T0080299.1 MGP_AJ_G0031263.1 mouse_genomes_project 6 123719608 123720591 - Cd27 protein_coding retained_intron MGP_AJ_T0080300.1 MGP_AJ_G0031263.1 mouse_genomes_project 6 123722072 123722967 - Cd27 protein_coding retained_intron MGP_AJ_T0002051.1 MGP_AJ_G0001964.1 mouse_genomes_project 6 84784691 84786383 + TEC TEC MGP_AJ_T0002058.1 MGP_AJ_G0001971.1 mouse_genomes_project 6 85451463 85454099 + TEC TEC MGP_AJ_T0001950.1 MGP_AJ_G0001863.1 mouse_genomes_project 6 32865065 32867469 - TEC TEC MGP_AJ_T0008616.1 MGP_AJ_G0006961.1 mouse_genomes_project 6 49363546 49367685 + Gm44028 lincRNA lincRNA MGP_AJ_T0077971.1 MGP_AJ_G0030807.1 mouse_genomes_project 6 63730137 63731162 - MGP_AJ_P0077971 protein_coding protein_coding MGP_AJ_T0002111.1 MGP_AJ_G0002024.1 mouse_genomes_project 6 101705531 101707693 + TEC TEC MGP_AJ_T0077479.1 MGP_AJ_G0030675.1 mouse_genomes_project 6 45438351 45451911 + MGP_AJ_P0077479 Gimap8 protein_coding protein_coding MGP_AJ_T0015259.1 MGP_AJ_G0013354.1 mouse_genomes_project 6 12884621 12885233 + processed_pseudogene processed_pseudogene MGP_AJ_T0018303.1 MGP_AJ_G0015622.1 mouse_genomes_project 6 119218091 119223561 + Gm4651 processed_transcript antisense MGP_AJ_T0018304.1 MGP_AJ_G0015622.1 mouse_genomes_project 6 119218223 119219713 + Gm4651 processed_transcript retained_intron MGP_AJ_T0018262.1 MGP_AJ_G0015608.1 mouse_genomes_project 6 50834996 50873845 + 4921529L05Rik processed_transcript processed_transcript MGP_AJ_T0018263.1 MGP_AJ_G0015608.1 mouse_genomes_project 6 50835006 50838100 + 4921529L05Rik processed_transcript processed_transcript MGP_AJ_T0018264.1 MGP_AJ_G0015608.1 mouse_genomes_project 6 50835034 50866999 + 4921529L05Rik processed_transcript processed_transcript MGP_AJ_T0018265.1 MGP_AJ_G0015608.1 mouse_genomes_project 6 50866924 50874490 + 4921529L05Rik processed_transcript processed_transcript MGP_AJ_T0001956.1 MGP_AJ_G0001869.1 mouse_genomes_project 6 38461762 38465309 - TEC TEC MGP_AJ_T0076328.1 MGP_AJ_G0030419.1 mouse_genomes_project 6 4746728 4926853 - MGP_AJ_P0076328 Col28a1 protein_coding protein_coding MGP_AJ_T0076329.1 MGP_AJ_G0030419.1 mouse_genomes_project 6 4769721 4771197 - Col28a1 protein_coding processed_transcript MGP_AJ_T0076330.1 MGP_AJ_G0030419.1 mouse_genomes_project 6 4823183 4828085 - Col28a1 protein_coding retained_intron MGP_AJ_T0002024.1 MGP_AJ_G0001937.1 mouse_genomes_project 6 75312502 75313989 - TEC TEC MGP_AJ_T0079845.1 MGP_AJ_G0031172.1 mouse_genomes_project 6 118507172 118593715 + MGP_AJ_P0079845 Kdm5a protein_coding protein_coding MGP_AJ_T0079846.1 MGP_AJ_G0031172.1 mouse_genomes_project 6 118507172 118563477 + MGP_AJ_P0079846 Kdm5a protein_coding nonsense_mediated_decay MGP_AJ_T0079847.1 MGP_AJ_G0031172.1 mouse_genomes_project 6 118507180 118512660 + Kdm5a protein_coding retained_intron MGP_AJ_T0079848.1 MGP_AJ_G0031172.1 mouse_genomes_project 6 118507506 118563450 + MGP_AJ_P0079848 Kdm5a protein_coding nonsense_mediated_decay MGP_AJ_T0079849.1 MGP_AJ_G0031172.1 mouse_genomes_project 6 118517877 118531182 + MGP_AJ_P0079849 Kdm5a protein_coding protein_coding MGP_AJ_T0079850.1 MGP_AJ_G0031172.1 mouse_genomes_project 6 118549847 118557836 + Kdm5a protein_coding retained_intron MGP_AJ_T0079851.1 MGP_AJ_G0031172.1 mouse_genomes_project 6 118549883 118590593 + MGP_AJ_P0079851 Kdm5a protein_coding unknown_likely_coding MGP_AJ_T0079852.1 MGP_AJ_G0031172.1 mouse_genomes_project 6 118571175 118574219 + Kdm5a protein_coding retained_intron MGP_AJ_T0079853.1 MGP_AJ_G0031172.1 mouse_genomes_project 6 118573759 118575980 + Kdm5a protein_coding retained_intron MGP_AJ_T0079854.1 MGP_AJ_G0031172.1 mouse_genomes_project 6 118574140 118588054 + Kdm5a protein_coding processed_transcript MGP_AJ_T0080133.1 MGP_AJ_G0031239.1 mouse_genomes_project 6 123295893 123300681 - MGP_AJ_P0080133 Tpi1 protein_coding protein_coding MGP_AJ_T0080134.1 MGP_AJ_G0031239.1 mouse_genomes_project 6 123297611 123300657 - MGP_AJ_P0080134 Tpi1 protein_coding protein_coding MGP_AJ_T0080135.1 MGP_AJ_G0031239.1 mouse_genomes_project 6 123297645 123298271 - Tpi1 protein_coding retained_intron MGP_AJ_T0080136.1 MGP_AJ_G0031239.1 mouse_genomes_project 6 123298833 123299225 - Tpi1 protein_coding retained_intron MGP_AJ_T0080137.1 MGP_AJ_G0031239.1 mouse_genomes_project 6 123298919 123300543 - Tpi1 protein_coding retained_intron MGP_AJ_T0080138.1 MGP_AJ_G0031239.1 mouse_genomes_project 6 123299848 123300539 - Tpi1 protein_coding retained_intron MGP_AJ_T0101848.1 MGP_AJ_G0039740.1 mouse_genomes_project 6 63336772 63356726 + transcribed_processed_pseudogene processed_transcript MGP_AJ_T0101849.1 MGP_AJ_G0039740.1 mouse_genomes_project 6 63345204 63357832 + transcribed_processed_pseudogene processed_transcript MGP_AJ_T0101850.1 MGP_AJ_G0039740.1 mouse_genomes_project 6 63356493 63357226 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0079059.1 MGP_AJ_G0031029.1 mouse_genomes_project 6 90847459 91022019 - MGP_AJ_P0079059 Adamts9 protein_coding protein_coding MGP_AJ_T0079060.1 MGP_AJ_G0031029.1 mouse_genomes_project 6 90868853 90937834 - Adamts9 protein_coding retained_intron MGP_AJ_T0079063.1 MGP_AJ_G0031029.1 mouse_genomes_project 6 90923290 90937844 - Adamts9 protein_coding retained_intron MGP_AJ_T0079064.1 MGP_AJ_G0031029.1 mouse_genomes_project 6 90929634 90932320 - Adamts9 protein_coding retained_intron MGP_AJ_T0079066.1 MGP_AJ_G0031029.1 mouse_genomes_project 6 91005045 91022356 - Adamts9 protein_coding processed_transcript MGP_AJ_T0008529.1 MGP_AJ_G0006903.1 mouse_genomes_project 6 13998697 13999305 + Gm29591 lincRNA lincRNA MGP_AJ_T0102667.1 MGP_AJ_G0040409.1 mouse_genomes_project 6 37536505 37607098 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0078336.1 MGP_AJ_G0030885.1 mouse_genomes_project 6 80877223 80879135 + MGP_AJ_P0078336 Lbx2 protein_coding protein_coding MGP_AJ_T0078337.1 MGP_AJ_G0030885.1 mouse_genomes_project 6 80878229 80878988 + Lbx2 protein_coding processed_transcript MGP_AJ_T0101337.1 MGP_AJ_G0039303.1 mouse_genomes_project 6 43231433 43231565 - Gm25161 snoRNA snoRNA MGP_AJ_T0000194.1 MGP_AJ_G0000146.1 mouse_genomes_project 6 67616593 67617161 - MGP_AJ_P0000194 Igkv7-33 IG_V_gene IG_V_gene MGP_AJ_T0000195.1 MGP_AJ_G0000146.1 mouse_genomes_project 6 67616593 67617161 - MGP_AJ_P0000195 Igkv7-33 IG_V_gene IG_V_gene MGP_AJ_T0077262.1 MGP_AJ_G0030615.1 mouse_genomes_project 6 38941187 38942147 + MGP_AJ_P0077262 Tas2r144 protein_coding protein_coding MGP_AJ_T0102670.1 MGP_AJ_G0040412.1 mouse_genomes_project 6 38176303 38179161 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0015304.1 MGP_AJ_G0013399.1 mouse_genomes_project 6 36566366 36566940 - processed_pseudogene processed_pseudogene MGP_AJ_T0080949.1 MGP_AJ_G0031442.1 mouse_genomes_project 6 141571121 141577900 - MGP_AJ_P0080949 Kcnj8 protein_coding protein_coding MGP_AJ_T0080950.1 MGP_AJ_G0031442.1 mouse_genomes_project 6 141571123 141577657 - MGP_AJ_P0080950 Kcnj8 protein_coding protein_coding MGP_AJ_T0015460.1 MGP_AJ_G0013555.1 mouse_genomes_project 6 81597905 81598283 - processed_pseudogene processed_pseudogene MGP_AJ_T0015618.1 MGP_AJ_G0013713.1 mouse_genomes_project 6 129001301 129001640 - processed_pseudogene processed_pseudogene MGP_AJ_T0102672.1 MGP_AJ_G0040414.1 mouse_genomes_project 6 38265828 38267359 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0004924.1 MGP_AJ_G0004227.1 mouse_genomes_project 6 30845215 30867524 + Gm13856 antisense antisense MGP_AJ_T0077654.1 MGP_AJ_G0030719.1 mouse_genomes_project 6 49093533 49096645 - MGP_AJ_P0077654 Hoxa13 protein_coding protein_coding MGP_AJ_T0077655.1 MGP_AJ_G0030719.1 mouse_genomes_project 6 49094692 49096722 - MGP_AJ_P0077655 Hoxa13 protein_coding protein_coding MGP_AJ_T0077656.1 MGP_AJ_G0030719.1 mouse_genomes_project 6 49094710 49096644 - Hoxa13 protein_coding processed_transcript MGP_AJ_T0077657.1 MGP_AJ_G0030719.1 mouse_genomes_project 6 49094710 49096644 - Hoxa13 protein_coding processed_transcript MGP_AJ_T0077658.1 MGP_AJ_G0030719.1 mouse_genomes_project 6 49094710 49096644 - Hoxa13 protein_coding processed_transcript MGP_AJ_T0077659.1 MGP_AJ_G0030719.1 mouse_genomes_project 6 49094710 49096644 - MGP_AJ_P0077659 Hoxa13 protein_coding protein_coding MGP_AJ_T0077185.1 MGP_AJ_G0030579.1 mouse_genomes_project 6 37147720 37184398 - MGP_AJ_P0077185 E330009J07Rik protein_coding protein_coding MGP_AJ_T0077186.1 MGP_AJ_G0030579.1 mouse_genomes_project 6 37153845 37184396 - MGP_AJ_P0077186 E330009J07Rik protein_coding protein_coding MGP_AJ_T0077187.1 MGP_AJ_G0030579.1 mouse_genomes_project 6 37166884 37179675 - MGP_AJ_P0077187 E330009J07Rik protein_coding protein_coding MGP_AJ_T0077188.1 MGP_AJ_G0030579.1 mouse_genomes_project 6 37171814 37184378 - E330009J07Rik protein_coding retained_intron MGP_AJ_T0077493.1 MGP_AJ_G0030680.1 mouse_genomes_project 6 45510116 45516122 + MGP_AJ_P0077493 Gimap7 protein_coding protein_coding MGP_AJ_T0077495.1 MGP_AJ_G0030680.1 mouse_genomes_project 6 45510152 45515225 + MGP_AJ_P0077495 Gimap7 protein_coding protein_coding MGP_AJ_T0077496.1 MGP_AJ_G0030680.1 mouse_genomes_project 6 45510160 45511152 + Gimap7 protein_coding retained_intron MGP_AJ_T0100126.1 MGP_AJ_G0038092.1 mouse_genomes_project 6 128847542 128847607 + Gm22555 snRNA snRNA MGP_AJ_T0098718.1 MGP_AJ_G0036702.1 mouse_genomes_project 6 144070242 144070357 - Gm23071 rRNA rRNA MGP_AJ_T0078402.1 MGP_AJ_G0030899.1 mouse_genomes_project 6 81143898 81153149 + MGP_AJ_P0078402 Bola3 protein_coding protein_coding MGP_AJ_T0078403.1 MGP_AJ_G0030899.1 mouse_genomes_project 6 81143967 81153124 + MGP_AJ_P0078403 Bola3 protein_coding protein_coding MGP_AJ_T0078404.1 MGP_AJ_G0030899.1 mouse_genomes_project 6 81144197 81154889 + MGP_AJ_P0078404 Bola3 protein_coding protein_coding MGP_AJ_T0078405.1 MGP_AJ_G0030899.1 mouse_genomes_project 6 81144242 81145152 + Bola3 protein_coding processed_transcript MGP_AJ_T0078406.1 MGP_AJ_G0030899.1 mouse_genomes_project 6 81144271 81147950 + Bola3 protein_coding retained_intron MGP_AJ_T0078407.1 MGP_AJ_G0030899.1 mouse_genomes_project 6 81145791 81147961 + Bola3 protein_coding retained_intron MGP_AJ_T0078408.1 MGP_AJ_G0030899.1 mouse_genomes_project 6 81145791 81153169 + Bola3 protein_coding retained_intron MGP_AJ_T0078409.1 MGP_AJ_G0030899.1 mouse_genomes_project 6 81146846 81153086 + Bola3 protein_coding processed_transcript MGP_AJ_T0078410.1 MGP_AJ_G0030899.1 mouse_genomes_project 6 81148065 81154000 + Bola3 protein_coding processed_transcript MGP_AJ_T0080292.1 MGP_AJ_G0031262.1 mouse_genomes_project 6 123709833 123717809 - MGP_AJ_P0080292 Tapbpl protein_coding protein_coding MGP_AJ_T0101916.1 MGP_AJ_G0039778.1 mouse_genomes_project 6 45296368 45322381 + transcribed_unitary_pseudogene processed_transcript MGP_AJ_T0101917.1 MGP_AJ_G0039778.1 mouse_genomes_project 6 45300071 45317987 + transcribed_unitary_pseudogene transcribed_unitary_pseudogene MGP_AJ_T0101918.1 MGP_AJ_G0039778.1 mouse_genomes_project 6 45304189 45320053 + transcribed_unitary_pseudogene processed_transcript MGP_AJ_T0101919.1 MGP_AJ_G0039778.1 mouse_genomes_project 6 45304246 45316061 + transcribed_unitary_pseudogene processed_transcript MGP_AJ_T0008715.1 MGP_AJ_G0007040.1 mouse_genomes_project 6 111710360 111711856 - 1700015O11Rik lincRNA lincRNA MGP_AJ_T0015309.1 MGP_AJ_G0013404.1 mouse_genomes_project 6 38006449 38006893 + processed_pseudogene processed_pseudogene MGP_AJ_T0077370.1 MGP_AJ_G0030653.1 mouse_genomes_project 6 44196144 44244026 + MGP_AJ_P0077370 Cul1 protein_coding protein_coding MGP_AJ_T0077371.1 MGP_AJ_G0030653.1 mouse_genomes_project 6 44196238 44231759 + MGP_AJ_P0077371 Cul1 protein_coding protein_coding MGP_AJ_T0077372.1 MGP_AJ_G0030653.1 mouse_genomes_project 6 44196650 44271127 + MGP_AJ_P0077372 Cul1 protein_coding protein_coding MGP_AJ_T0077373.1 MGP_AJ_G0030653.1 mouse_genomes_project 6 44197066 44273500 + MGP_AJ_P0077373 Cul1 protein_coding protein_coding MGP_AJ_T0077374.1 MGP_AJ_G0030653.1 mouse_genomes_project 6 44197134 44231971 + MGP_AJ_P0077374 Cul1 protein_coding protein_coding MGP_AJ_T0077375.1 MGP_AJ_G0030653.1 mouse_genomes_project 6 44262190 44273419 + Cul1 protein_coding processed_transcript MGP_AJ_T0077376.1 MGP_AJ_G0030653.1 mouse_genomes_project 6 44264374 44267154 + Cul1 protein_coding retained_intron MGP_AJ_T0077377.1 MGP_AJ_G0030653.1 mouse_genomes_project 6 44267070 44270642 + Cul1 protein_coding retained_intron MGP_AJ_T0077378.1 MGP_AJ_G0030653.1 mouse_genomes_project 6 44270924 44273140 + Cul1 protein_coding processed_transcript MGP_AJ_T0078243.1 MGP_AJ_G0030866.1 mouse_genomes_project 6 76169617 76175574 + MGP_AJ_P0078243 Reg1 protein_coding protein_coding MGP_AJ_T0078244.1 MGP_AJ_G0030866.1 mouse_genomes_project 6 76169677 76175574 + MGP_AJ_P0078244 Reg1 protein_coding protein_coding MGP_AJ_T0078245.1 MGP_AJ_G0030866.1 mouse_genomes_project 6 76172889 76175573 + MGP_AJ_P0078245 Reg1 protein_coding protein_coding MGP_AJ_T0015471.1 MGP_AJ_G0013566.1 mouse_genomes_project 6 83400147 83400616 + processed_pseudogene processed_pseudogene MGP_AJ_T0079096.1 MGP_AJ_G0031037.1 mouse_genomes_project 6 93582247 93823544 - MGP_AJ_P0079096 Suclg2 protein_coding protein_coding MGP_AJ_T0079097.1 MGP_AJ_G0031037.1 mouse_genomes_project 6 93583379 93826163 - MGP_AJ_P0079097 Suclg2 protein_coding unknown_likely_coding MGP_AJ_T0079098.1 MGP_AJ_G0031037.1 mouse_genomes_project 6 93583380 93796935 - MGP_AJ_P0079098 Suclg2 protein_coding protein_coding MGP_AJ_T0079099.1 MGP_AJ_G0031037.1 mouse_genomes_project 6 93677269 93754489 - Suclg2 protein_coding processed_transcript MGP_AJ_T0079100.1 MGP_AJ_G0031037.1 mouse_genomes_project 6 93765200 93823544 - Suclg2 protein_coding retained_intron MGP_AJ_T0079777.1 MGP_AJ_G0031165.1 mouse_genomes_project 6 117693506 117976738 - MGP_AJ_P0079777 Erc1 protein_coding protein_coding MGP_AJ_T0079778.1 MGP_AJ_G0031165.1 mouse_genomes_project 6 117693514 117953289 - MGP_AJ_P0079778 Erc1 protein_coding protein_coding MGP_AJ_T0079779.1 MGP_AJ_G0031165.1 mouse_genomes_project 6 117695340 117976687 - MGP_AJ_P0079779 Erc1 protein_coding nonsense_mediated_decay MGP_AJ_T0079780.1 MGP_AJ_G0031165.1 mouse_genomes_project 6 117696418 117976647 - MGP_AJ_P0079780 Erc1 protein_coding protein_coding MGP_AJ_T0079781.1 MGP_AJ_G0031165.1 mouse_genomes_project 6 117697267 117976703 - MGP_AJ_P0079781 Erc1 protein_coding nonsense_mediated_decay MGP_AJ_T0079782.1 MGP_AJ_G0031165.1 mouse_genomes_project 6 117697702 117871320 - MGP_AJ_P0079782 Erc1 protein_coding nonsense_mediated_decay MGP_AJ_T0079783.1 MGP_AJ_G0031165.1 mouse_genomes_project 6 117697937 117976722 - MGP_AJ_P0079783 Erc1 protein_coding nonsense_mediated_decay MGP_AJ_T0079784.1 MGP_AJ_G0031165.1 mouse_genomes_project 6 117698007 117976755 - MGP_AJ_P0079784 Erc1 protein_coding protein_coding MGP_AJ_T0079785.1 MGP_AJ_G0031165.1 mouse_genomes_project 6 117698222 117976677 - MGP_AJ_P0079785 Erc1 protein_coding nonsense_mediated_decay MGP_AJ_T0079786.1 MGP_AJ_G0031165.1 mouse_genomes_project 6 117740513 117745323 - Erc1 protein_coding retained_intron MGP_AJ_T0079787.1 MGP_AJ_G0031165.1 mouse_genomes_project 6 117848734 117924751 - Erc1 protein_coding processed_transcript MGP_AJ_T0079788.1 MGP_AJ_G0031165.1 mouse_genomes_project 6 117900582 117976690 - MGP_AJ_P0079788 Erc1 protein_coding protein_coding MGP_AJ_T0079789.1 MGP_AJ_G0031165.1 mouse_genomes_project 6 117952047 117954523 - Erc1 protein_coding retained_intron MGP_AJ_T0080651.1 MGP_AJ_G0031381.1 mouse_genomes_project 6 133445007 133468099 - MGP_AJ_P0080651 Mansc1 protein_coding protein_coding MGP_AJ_T0001963.1 MGP_AJ_G0001876.1 mouse_genomes_project 6 41992397 41995327 + TEC TEC MGP_AJ_T0011644.1 MGP_AJ_G0009766.1 mouse_genomes_project 6 49081827 49081923 + Gm28032 misc_RNA misc_RNA MGP_AJ_T0008719.1 MGP_AJ_G0007044.1 mouse_genomes_project 6 115516740 115519781 - Gm4640 lincRNA lincRNA MGP_AJ_T0079761.1 MGP_AJ_G0031161.1 mouse_genomes_project 6 117435048 117450694 - MGP_AJ_P0079761 Lrtm2 protein_coding protein_coding MGP_AJ_T0079762.1 MGP_AJ_G0031161.1 mouse_genomes_project 6 117435048 117449133 - MGP_AJ_P0079762 Lrtm2 protein_coding protein_coding MGP_AJ_T0079763.1 MGP_AJ_G0031161.1 mouse_genomes_project 6 117435048 117450685 - MGP_AJ_P0079763 Lrtm2 protein_coding protein_coding MGP_AJ_T0079764.1 MGP_AJ_G0031161.1 mouse_genomes_project 6 117443579 117449133 - MGP_AJ_P0079764 Lrtm2 protein_coding protein_coding MGP_AJ_T0079185.1 MGP_AJ_G0031053.1 mouse_genomes_project 6 97799170 97814265 - MGP_AJ_P0079185 Prok2 protein_coding protein_coding MGP_AJ_T0079186.1 MGP_AJ_G0031053.1 mouse_genomes_project 6 97799221 97814226 - MGP_AJ_P0079186 Prok2 protein_coding protein_coding MGP_AJ_T0079187.1 MGP_AJ_G0031053.1 mouse_genomes_project 6 97799891 97814256 - MGP_AJ_P0079187 Prok2 protein_coding protein_coding MGP_AJ_T0079188.1 MGP_AJ_G0031053.1 mouse_genomes_project 6 97809969 97814265 - MGP_AJ_P0079188 Prok2 protein_coding protein_coding MGP_AJ_T0098704.1 MGP_AJ_G0036688.1 mouse_genomes_project 6 9427109 9427229 + n-R5s160 rRNA rRNA MGP_AJ_T0076728.1 MGP_AJ_G0030500.1 mouse_genomes_project 6 26168518 26179212 + MGP_AJ_P0076728 Irf5 protein_coding protein_coding MGP_AJ_T0076729.1 MGP_AJ_G0030500.1 mouse_genomes_project 6 26168601 26183668 + MGP_AJ_P0076729 Irf5 protein_coding protein_coding MGP_AJ_T0076730.1 MGP_AJ_G0030500.1 mouse_genomes_project 6 26170163 26175890 + MGP_AJ_P0076730 Irf5 protein_coding protein_coding MGP_AJ_T0076731.1 MGP_AJ_G0030500.1 mouse_genomes_project 6 26171173 26179212 + MGP_AJ_P0076731 Irf5 protein_coding protein_coding MGP_AJ_T0076732.1 MGP_AJ_G0030500.1 mouse_genomes_project 6 26173140 26177239 + MGP_AJ_P0076732 Irf5 protein_coding protein_coding MGP_AJ_T0076736.1 MGP_AJ_G0030500.1 mouse_genomes_project 6 26182943 26183655 + Irf5 protein_coding processed_transcript MGP_AJ_T0001916.1 MGP_AJ_G0001829.1 mouse_genomes_project 6 3625151 3627184 - TEC TEC MGP_AJ_T0004971.1 MGP_AJ_G0004264.1 mouse_genomes_project 6 69684704 69687335 - Gm26628 antisense antisense MGP_AJ_T0081143.1 MGP_AJ_G0031475.1 mouse_genomes_project 6 146489336 146524989 + MGP_AJ_P0081143 Ccdc91 protein_coding protein_coding MGP_AJ_T0081144.1 MGP_AJ_G0031475.1 mouse_genomes_project 6 146489379 146645375 + MGP_AJ_P0081144 Ccdc91 protein_coding protein_coding MGP_AJ_T0081145.1 MGP_AJ_G0031475.1 mouse_genomes_project 6 146489499 146551158 + MGP_AJ_P0081145 Ccdc91 protein_coding nonsense_mediated_decay MGP_AJ_T0081146.1 MGP_AJ_G0031475.1 mouse_genomes_project 6 146548460 146559913 + Ccdc91 protein_coding processed_transcript MGP_AJ_T0079249.1 MGP_AJ_G0031068.1 mouse_genomes_project 6 106176679 106255790 - MGP_AJ_P0079249 Sumf1 protein_coding protein_coding MGP_AJ_T0079250.1 MGP_AJ_G0031068.1 mouse_genomes_project 6 106177998 106196768 - Sumf1 protein_coding processed_transcript MGP_AJ_T0079251.1 MGP_AJ_G0031068.1 mouse_genomes_project 6 106178127 106255764 - MGP_AJ_P0079251 Sumf1 protein_coding protein_coding MGP_AJ_T0079252.1 MGP_AJ_G0031068.1 mouse_genomes_project 6 106178127 106255764 - MGP_AJ_P0079252 Sumf1 protein_coding protein_coding MGP_AJ_T0079253.1 MGP_AJ_G0031068.1 mouse_genomes_project 6 106187848 106215514 - MGP_AJ_P0079253 Sumf1 protein_coding protein_coding MGP_AJ_T0079254.1 MGP_AJ_G0031068.1 mouse_genomes_project 6 106215131 106222702 - Sumf1 protein_coding retained_intron MGP_AJ_T0080423.1 MGP_AJ_G0031293.1 mouse_genomes_project 6 126906190 126912106 + Foxm1 protein_coding processed_transcript MGP_AJ_T0080424.1 MGP_AJ_G0031293.1 mouse_genomes_project 6 126906190 126919269 + MGP_AJ_P0080424 Foxm1 protein_coding protein_coding MGP_AJ_T0080425.1 MGP_AJ_G0031293.1 mouse_genomes_project 6 126908848 126917089 + MGP_AJ_P0080425 Foxm1 protein_coding protein_coding MGP_AJ_T0080426.1 MGP_AJ_G0031293.1 mouse_genomes_project 6 126909310 126916481 + MGP_AJ_P0080426 Foxm1 protein_coding protein_coding MGP_AJ_T0080427.1 MGP_AJ_G0031293.1 mouse_genomes_project 6 126910430 126915994 + MGP_AJ_P0080427 Foxm1 protein_coding protein_coding MGP_AJ_T0080428.1 MGP_AJ_G0031293.1 mouse_genomes_project 6 126910508 126915294 + Foxm1 protein_coding retained_intron MGP_AJ_T0080429.1 MGP_AJ_G0031293.1 mouse_genomes_project 6 126912583 126914494 + Foxm1 protein_coding retained_intron MGP_AJ_T0080430.1 MGP_AJ_G0031293.1 mouse_genomes_project 6 126914082 126916305 + Foxm1 protein_coding retained_intron MGP_AJ_T0010795.1 MGP_AJ_G0008917.1 mouse_genomes_project 6 111605414 111605539 - Gm23365 miRNA miRNA MGP_AJ_T0008693.1 MGP_AJ_G0007023.1 mouse_genomes_project 6 96629938 96646088 - Gm44197 lincRNA lincRNA MGP_AJ_T0005112.1 MGP_AJ_G0004361.1 mouse_genomes_project 6 141621699 141633555 + 5330439B14Rik antisense antisense MGP_AJ_T0002172.1 MGP_AJ_G0002084.1 mouse_genomes_project 6 140412683 140416227 + TEC TEC MGP_AJ_T0015665.1 MGP_AJ_G0013760.1 mouse_genomes_project 6 142157331 142157534 + processed_pseudogene processed_pseudogene MGP_AJ_T0008516.1 MGP_AJ_G0006895.1 mouse_genomes_project 6 7646713 7654840 - AA545190 lincRNA lincRNA MGP_AJ_T0008517.1 MGP_AJ_G0006895.1 mouse_genomes_project 6 7647152 7654815 - AA545190 lincRNA lincRNA MGP_AJ_T0008518.1 MGP_AJ_G0006895.1 mouse_genomes_project 6 7647211 7649532 - AA545190 lincRNA lincRNA MGP_AJ_T0015513.1 MGP_AJ_G0013608.1 mouse_genomes_project 6 100764862 100766916 - processed_pseudogene processed_pseudogene MGP_AJ_T0077053.1 MGP_AJ_G0030553.1 mouse_genomes_project 6 34754278 34757351 - Atp6v0a4 protein_coding processed_transcript MGP_AJ_T0077054.1 MGP_AJ_G0030553.1 mouse_genomes_project 6 34754278 34816588 - MGP_AJ_P0077054 Atp6v0a4 protein_coding protein_coding MGP_AJ_T0077055.1 MGP_AJ_G0030553.1 mouse_genomes_project 6 34754278 34831554 - MGP_AJ_P0077055 Atp6v0a4 protein_coding protein_coding MGP_AJ_T0077056.1 MGP_AJ_G0030553.1 mouse_genomes_project 6 34757070 34761124 - Atp6v0a4 protein_coding retained_intron MGP_AJ_T0077057.1 MGP_AJ_G0030553.1 mouse_genomes_project 6 34785331 34789789 - Atp6v0a4 protein_coding retained_intron MGP_AJ_T0077058.1 MGP_AJ_G0030553.1 mouse_genomes_project 6 34795830 34804298 - Atp6v0a4 protein_coding retained_intron MGP_AJ_T0077059.1 MGP_AJ_G0030553.1 mouse_genomes_project 6 34800791 34831457 - Atp6v0a4 protein_coding retained_intron MGP_AJ_T0011657.1 MGP_AJ_G0009779.1 mouse_genomes_project 6 81509071 81509537 + Gm27631 misc_RNA misc_RNA MGP_AJ_T0015412.1 MGP_AJ_G0013507.1 mouse_genomes_project 6 64520498 64520835 - processed_pseudogene processed_pseudogene MGP_AJ_T0100108.1 MGP_AJ_G0038074.1 mouse_genomes_project 6 101930086 101930152 - Gm25656 snRNA snRNA MGP_AJ_T0002185.1 MGP_AJ_G0002097.1 mouse_genomes_project 6 147376279 147381725 - TEC TEC MGP_AJ_T0080288.1 MGP_AJ_G0031261.1 mouse_genomes_project 6 123701447 123708207 + MGP_AJ_P0080288 Vamp1 protein_coding protein_coding MGP_AJ_T0080289.1 MGP_AJ_G0031261.1 mouse_genomes_project 6 123701477 123708064 + MGP_AJ_P0080289 Vamp1 protein_coding protein_coding MGP_AJ_T0080290.1 MGP_AJ_G0031261.1 mouse_genomes_project 6 123701477 123727199 + MGP_AJ_P0080290 Vamp1 protein_coding protein_coding MGP_AJ_T0080291.1 MGP_AJ_G0031261.1 mouse_genomes_project 6 123704477 123707556 + MGP_AJ_P0080291 Vamp1 protein_coding protein_coding MGP_AJ_T0080293.1 MGP_AJ_G0031261.1 mouse_genomes_project 6 123717224 123732029 + Vamp1 protein_coding processed_transcript MGP_AJ_T0080294.1 MGP_AJ_G0031261.1 mouse_genomes_project 6 123717224 123725886 + Vamp1 protein_coding processed_transcript MGP_AJ_T0015448.1 MGP_AJ_G0013543.1 mouse_genomes_project 6 74149460 74149935 - processed_pseudogene processed_pseudogene MGP_AJ_T0077826.1 MGP_AJ_G0030758.1 mouse_genomes_project 6 53889558 54000695 + MGP_AJ_P0077826 protein_coding protein_coding MGP_AJ_T0002496.1 MGP_AJ_G0002402.1 mouse_genomes_project 6 38303684 38303698 + MGP_AJ_P0002496 Trbd2 TR_D_gene TR_D_gene MGP_AJ_T0078217.1 MGP_AJ_G0030858.1 mouse_genomes_project 6 71138016 71139111 - MGP_AJ_P0078217 4931417E11Rik protein_coding protein_coding MGP_AJ_T0078218.1 MGP_AJ_G0030858.1 mouse_genomes_project 6 71138024 71139063 - 4931417E11Rik protein_coding processed_transcript MGP_AJ_T0078219.1 MGP_AJ_G0030858.1 mouse_genomes_project 6 71138090 71139008 - 4931417E11Rik protein_coding transcribed_processed_pseudogene MGP_AJ_T0015381.1 MGP_AJ_G0013476.1 mouse_genomes_project 6 62059787 62060676 + processed_pseudogene processed_pseudogene MGP_AJ_T0079184.1 MGP_AJ_G0031052.1 mouse_genomes_project 6 97780522 97782910 + MGP_AJ_P0079184 Gpr27 protein_coding protein_coding MGP_AJ_T0002110.1 MGP_AJ_G0002023.1 mouse_genomes_project 6 101659277 101661748 + TEC TEC MGP_AJ_T0015409.1 MGP_AJ_G0013504.1 mouse_genomes_project 6 64486597 64487521 - processed_pseudogene processed_pseudogene MGP_AJ_T0080397.1 MGP_AJ_G0031287.1 mouse_genomes_project 6 126211974 126293340 - MGP_AJ_P0080397 Prmt8 protein_coding protein_coding MGP_AJ_T0008565.1 MGP_AJ_G0006928.1 mouse_genomes_project 6 30675978 30683380 - Gm13853 lincRNA lincRNA MGP_AJ_T0015253.1 MGP_AJ_G0013348.1 mouse_genomes_project 6 10588947 10589241 - processed_pseudogene processed_pseudogene MGP_AJ_T0008566.1 MGP_AJ_G0006929.1 mouse_genomes_project 6 30872520 30879995 + Gm13855 lincRNA lincRNA MGP_AJ_T0002103.1 MGP_AJ_G0002016.1 mouse_genomes_project 6 99388772 99391457 - TEC TEC MGP_AJ_T0078729.1 MGP_AJ_G0030960.1 mouse_genomes_project 6 85496561 85508820 - MGP_AJ_P0078729 Prokr1 protein_coding protein_coding MGP_AJ_T0078730.1 MGP_AJ_G0030960.1 mouse_genomes_project 6 85496562 85508797 - MGP_AJ_P0078730 Prokr1 protein_coding protein_coding MGP_AJ_T0078731.1 MGP_AJ_G0030960.1 mouse_genomes_project 6 85506374 85508796 - MGP_AJ_P0078731 Prokr1 protein_coding protein_coding MGP_AJ_T0077316.1 MGP_AJ_G0030631.1 mouse_genomes_project 6 39348138 39369340 - MGP_AJ_P0077316 Tcaf2 protein_coding protein_coding MGP_AJ_T0077317.1 MGP_AJ_G0030631.1 mouse_genomes_project 6 39351532 39354563 - Tcaf2 protein_coding retained_intron MGP_AJ_T0002166.1 MGP_AJ_G0002078.1 mouse_genomes_project 6 138529995 138531277 - TEC TEC MGP_AJ_T0002095.1 MGP_AJ_G0002008.1 mouse_genomes_project 6 97746304 97750080 - TEC TEC MGP_AJ_T0102691.1 MGP_AJ_G0040433.1 mouse_genomes_project 6 55278021 55278947 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0015474.1 MGP_AJ_G0013569.1 mouse_genomes_project 6 83822288 83822986 - processed_pseudogene processed_pseudogene MGP_AJ_T0101387.1 MGP_AJ_G0039353.1 mouse_genomes_project 6 123671406 123671731 - Scarna10 snoRNA snoRNA MGP_AJ_T0102055.1 MGP_AJ_G0039842.1 mouse_genomes_project 6 129711396 129724680 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_AJ_T0102056.1 MGP_AJ_G0039842.1 mouse_genomes_project 6 129711397 129725642 - transcribed_unprocessed_pseudogene processed_transcript MGP_AJ_T0080512.1 MGP_AJ_G0031316.1 mouse_genomes_project 6 127949039 127959607 - MGP_AJ_P0080512 Clec12b protein_coding protein_coding MGP_AJ_T0080513.1 MGP_AJ_G0031316.1 mouse_genomes_project 6 127949311 127959978 - MGP_AJ_P0080513 Clec12b protein_coding protein_coding MGP_AJ_T0015334.1 MGP_AJ_G0013429.1 mouse_genomes_project 6 45756007 45757253 + processed_pseudogene processed_pseudogene MGP_AJ_T0081141.1 MGP_AJ_G0031474.1 mouse_genomes_project 6 146262860 146275172 - MGP_AJ_P0081141 Pthlh protein_coding protein_coding MGP_AJ_T0081142.1 MGP_AJ_G0031474.1 mouse_genomes_project 6 146262868 146275188 - MGP_AJ_P0081142 Pthlh protein_coding protein_coding MGP_AJ_T0010744.1 MGP_AJ_G0008866.1 mouse_genomes_project 6 16208510 16208630 + Mir6370 miRNA miRNA MGP_AJ_T0100084.1 MGP_AJ_G0038050.1 mouse_genomes_project 6 35990228 35990327 - Gm26008 snRNA snRNA MGP_AJ_T0015387.1 MGP_AJ_G0013482.1 mouse_genomes_project 6 62308057 62308408 - processed_pseudogene processed_pseudogene MGP_AJ_T0079267.1 MGP_AJ_G0031070.1 mouse_genomes_project 6 106733091 106739403 + MGP_AJ_P0079267 Bhlhe40 protein_coding protein_coding MGP_AJ_T0079268.1 MGP_AJ_G0031070.1 mouse_genomes_project 6 106733261 106733797 + Bhlhe40 protein_coding retained_intron MGP_AJ_T0079269.1 MGP_AJ_G0031070.1 mouse_genomes_project 6 106733336 106735162 + MGP_AJ_P0079269 Bhlhe40 protein_coding protein_coding MGP_AJ_T0079270.1 MGP_AJ_G0031070.1 mouse_genomes_project 6 106735520 106738143 + Bhlhe40 protein_coding retained_intron MGP_AJ_T0078951.1 MGP_AJ_G0031009.1 mouse_genomes_project 6 88692027 88756131 - MGP_AJ_P0078951 Iqsec1 protein_coding protein_coding MGP_AJ_T0078952.1 MGP_AJ_G0031009.1 mouse_genomes_project 6 88695493 88698168 - Iqsec1 protein_coding retained_intron MGP_AJ_T0078953.1 MGP_AJ_G0031009.1 mouse_genomes_project 6 88695493 88849474 - MGP_AJ_P0078953 Iqsec1 protein_coding protein_coding MGP_AJ_T0078954.1 MGP_AJ_G0031009.1 mouse_genomes_project 6 88698507 88704522 - Iqsec1 protein_coding processed_transcript MGP_AJ_T0078955.1 MGP_AJ_G0031009.1 mouse_genomes_project 6 88698691 88703870 - Iqsec1 protein_coding processed_transcript MGP_AJ_T0078956.1 MGP_AJ_G0031009.1 mouse_genomes_project 6 88729538 88734426 - Iqsec1 protein_coding processed_transcript MGP_AJ_T0078957.1 MGP_AJ_G0031009.1 mouse_genomes_project 6 88730252 88803675 - MGP_AJ_P0078957 Iqsec1 protein_coding protein_coding MGP_AJ_T0078958.1 MGP_AJ_G0031009.1 mouse_genomes_project 6 88730382 88776255 - Iqsec1 protein_coding processed_transcript MGP_AJ_T0078959.1 MGP_AJ_G0031009.1 mouse_genomes_project 6 88734328 88797105 - Iqsec1 protein_coding processed_transcript MGP_AJ_T0015615.1 MGP_AJ_G0013710.1 mouse_genomes_project 6 128247076 128247681 - processed_pseudogene processed_pseudogene MGP_AJ_T0077338.1 MGP_AJ_G0030642.1 mouse_genomes_project 6 39853501 39874748 + MGP_AJ_P0077338 Olfr441 protein_coding protein_coding MGP_AJ_T0077339.1 MGP_AJ_G0030642.1 mouse_genomes_project 6 39873815 39874748 + MGP_AJ_P0077339 Olfr441 protein_coding protein_coding MGP_AJ_T0015256.1 MGP_AJ_G0013351.1 mouse_genomes_project 6 11049769 11050340 - processed_pseudogene processed_pseudogene MGP_AJ_T0000135.1 MGP_AJ_G0000103.1 mouse_genomes_project 6 64930454 64931191 - MGP_AJ_P0000135 Igkv1-131 IG_V_gene IG_V_gene MGP_AJ_T0101350.1 MGP_AJ_G0039316.1 mouse_genomes_project 6 64957091 64957229 - Gm22425 snoRNA snoRNA MGP_AJ_T0000140.1 MGP_AJ_G0000106.1 mouse_genomes_project 6 65090966 65091437 + MGP_AJ_P0000140 Igkv14-126 IG_V_gene IG_V_gene MGP_AJ_T0079360.1 MGP_AJ_G0031086.1 mouse_genomes_project 6 111399856 111407002 + MGP_AJ_P0079360 Ogg1 protein_coding protein_coding MGP_AJ_T0079361.1 MGP_AJ_G0031086.1 mouse_genomes_project 6 111399869 111401637 + Ogg1 protein_coding retained_intron MGP_AJ_T0079362.1 MGP_AJ_G0031086.1 mouse_genomes_project 6 111399883 111406998 + MGP_AJ_P0079362 Ogg1 protein_coding nonsense_mediated_decay MGP_AJ_T0079363.1 MGP_AJ_G0031086.1 mouse_genomes_project 6 111399892 111402144 + Ogg1 protein_coding processed_transcript MGP_AJ_T0079364.1 MGP_AJ_G0031086.1 mouse_genomes_project 6 111399897 111406799 + MGP_AJ_P0079364 Ogg1 protein_coding nonsense_mediated_decay MGP_AJ_T0079365.1 MGP_AJ_G0031086.1 mouse_genomes_project 6 111399995 111401768 + Ogg1 protein_coding retained_intron MGP_AJ_T0079366.1 MGP_AJ_G0031086.1 mouse_genomes_project 6 111406131 111407882 + Ogg1 protein_coding retained_intron MGP_AJ_T0015555.1 MGP_AJ_G0013650.1 mouse_genomes_project 6 115055679 115056109 + processed_pseudogene processed_pseudogene MGP_AJ_T0080765.1 MGP_AJ_G0031407.1 mouse_genomes_project 6 135819309 135837665 - MGP_AJ_P0080765 protein_coding unknown_likely_coding MGP_AJ_T0080767.1 MGP_AJ_G0031407.1 mouse_genomes_project 6 135819869 135837704 - MGP_AJ_P0080767 protein_coding protein_coding MGP_AJ_T0080768.1 MGP_AJ_G0031407.1 mouse_genomes_project 6 135829451 135835409 - MGP_AJ_P0080768 protein_coding protein_coding MGP_AJ_T0015629.1 MGP_AJ_G0013724.1 mouse_genomes_project 6 130543440 130543764 + processed_pseudogene processed_pseudogene MGP_AJ_T0077824.1 MGP_AJ_G0030756.1 mouse_genomes_project 6 53887489 53890773 + MGP_AJ_P0077824 Vmn1r7 protein_coding protein_coding MGP_AJ_T0015406.1 MGP_AJ_G0013501.1 mouse_genomes_project 6 64285955 64286420 + processed_pseudogene processed_pseudogene MGP_AJ_T0101342.1 MGP_AJ_G0039308.1 mouse_genomes_project 6 50894052 50894188 - Gm22353 snoRNA snoRNA MGP_AJ_T0081031.1 MGP_AJ_G0031453.1 mouse_genomes_project 6 144249968 144254633 + MGP_AJ_P0081031 Lyrm5 protein_coding protein_coding MGP_AJ_T0081032.1 MGP_AJ_G0031453.1 mouse_genomes_project 6 144249990 144255380 + MGP_AJ_P0081032 Lyrm5 protein_coding protein_coding MGP_AJ_T0081033.1 MGP_AJ_G0031453.1 mouse_genomes_project 6 144249990 144255783 + MGP_AJ_P0081033 Lyrm5 protein_coding protein_coding MGP_AJ_T0081034.1 MGP_AJ_G0031453.1 mouse_genomes_project 6 144250004 144253809 + Lyrm5 protein_coding processed_transcript MGP_AJ_T0081035.1 MGP_AJ_G0031453.1 mouse_genomes_project 6 144250009 144255380 + MGP_AJ_P0081035 Lyrm5 protein_coding protein_coding MGP_AJ_T0081036.1 MGP_AJ_G0031453.1 mouse_genomes_project 6 144250009 144254613 + MGP_AJ_P0081036 Lyrm5 protein_coding protein_coding MGP_AJ_T0081037.1 MGP_AJ_G0031453.1 mouse_genomes_project 6 144250020 144255380 + MGP_AJ_P0081037 Lyrm5 protein_coding protein_coding MGP_AJ_T0081038.1 MGP_AJ_G0031453.1 mouse_genomes_project 6 144250034 144254576 + MGP_AJ_P0081038 Lyrm5 protein_coding protein_coding MGP_AJ_T0015666.1 MGP_AJ_G0013761.1 mouse_genomes_project 6 144355228 144356224 - processed_pseudogene processed_pseudogene MGP_AJ_T0015261.1 MGP_AJ_G0013356.1 mouse_genomes_project 6 14363761 14365017 - processed_pseudogene processed_pseudogene MGP_AJ_T0101322.1 MGP_AJ_G0039288.1 mouse_genomes_project 6 4642879 4643008 + Gm22276 snoRNA snoRNA MGP_AJ_T0102735.1 MGP_AJ_G0040476.1 mouse_genomes_project 6 131818424 131819366 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0078122.1 MGP_AJ_G0030841.1 mouse_genomes_project 6 70069391 70073291 + 0610030E20Rik protein_coding retained_intron MGP_AJ_T0078123.1 MGP_AJ_G0030841.1 mouse_genomes_project 6 70069400 70071250 + 0610030E20Rik protein_coding retained_intron MGP_AJ_T0078124.1 MGP_AJ_G0030841.1 mouse_genomes_project 6 70069408 70075224 + MGP_AJ_P0078124 0610030E20Rik protein_coding protein_coding MGP_AJ_T0078125.1 MGP_AJ_G0030841.1 mouse_genomes_project 6 70069441 70072692 + 0610030E20Rik protein_coding retained_intron MGP_AJ_T0004960.1 MGP_AJ_G0004253.1 mouse_genomes_project 6 51005203 51009248 - 9530036M11Rik antisense antisense MGP_AJ_T0102686.1 MGP_AJ_G0040428.1 mouse_genomes_project 6 55036213 55037126 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0078710.1 MGP_AJ_G0030953.1 mouse_genomes_project 6 85025649 85033903 + MGP_AJ_P0078710 D6Ertd527e protein_coding protein_coding MGP_AJ_T0078711.1 MGP_AJ_G0030953.1 mouse_genomes_project 6 85025651 85033959 + MGP_AJ_P0078711 D6Ertd527e protein_coding protein_coding MGP_AJ_T0078712.1 MGP_AJ_G0030953.1 mouse_genomes_project 6 85025651 85033960 + MGP_AJ_P0078712 D6Ertd527e protein_coding protein_coding MGP_AJ_T0078713.1 MGP_AJ_G0030953.1 mouse_genomes_project 6 85025685 85032370 + D6Ertd527e protein_coding processed_transcript MGP_AJ_T0078714.1 MGP_AJ_G0030953.1 mouse_genomes_project 6 85025716 85032362 + D6Ertd527e protein_coding processed_transcript MGP_AJ_T0015676.1 MGP_AJ_G0013771.1 mouse_genomes_project 6 148006579 148006991 + processed_pseudogene processed_pseudogene MGP_AJ_T0100085.1 MGP_AJ_G0038051.1 mouse_genomes_project 6 38371297 38371359 - Gm27549 snRNA snRNA MGP_AJ_T0077631.1 MGP_AJ_G0030711.1 mouse_genomes_project 6 49004591 49048961 - MGP_AJ_P0077631 Hoxa3 protein_coding protein_coding MGP_AJ_T0077632.1 MGP_AJ_G0030711.1 mouse_genomes_project 6 49008199 49019467 - MGP_AJ_P0077632 Hoxa3 protein_coding protein_coding MGP_AJ_T0077633.1 MGP_AJ_G0030711.1 mouse_genomes_project 6 49016176 49020482 - Hoxa3 protein_coding processed_transcript MGP_AJ_T0077635.1 MGP_AJ_G0030711.1 mouse_genomes_project 6 49035002 49049182 - Hoxa3 protein_coding retained_intron MGP_AJ_T0102049.1 MGP_AJ_G0039839.1 mouse_genomes_project 6 127592644 127599068 + transcribed_unprocessed_pseudogene processed_transcript MGP_AJ_T0102050.1 MGP_AJ_G0039839.1 mouse_genomes_project 6 127597122 127599060 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_AJ_T0008609.1 MGP_AJ_G0006957.1 mouse_genomes_project 6 48843083 48857446 + Gm44077 lincRNA lincRNA MGP_AJ_T0078799.1 MGP_AJ_G0030974.1 mouse_genomes_project 6 86156367 86157357 + MGP_AJ_P0078799 Dnajb8 protein_coding protein_coding MGP_AJ_T0078800.1 MGP_AJ_G0030974.1 mouse_genomes_project 6 86156984 86188714 + MGP_AJ_P0078800 Dnajb8 protein_coding nonsense_mediated_decay MGP_AJ_T0004983.1 MGP_AJ_G0004273.1 mouse_genomes_project 6 80897765 80900212 - Ccdc142os antisense antisense MGP_AJ_T0004984.1 MGP_AJ_G0004273.1 mouse_genomes_project 6 80897776 80900211 - Ccdc142os antisense antisense MGP_AJ_T0004985.1 MGP_AJ_G0004273.1 mouse_genomes_project 6 80898024 80900145 - Ccdc142os antisense antisense MGP_AJ_T0004986.1 MGP_AJ_G0004273.1 mouse_genomes_project 6 80898904 80900212 - Ccdc142os antisense antisense MGP_AJ_T0002729.1 MGP_AJ_G0002601.1 mouse_genomes_project 6 37881773 37882258 + TR_V_pseudogene TR_V_pseudogene MGP_AJ_T0015644.1 MGP_AJ_G0013739.1 mouse_genomes_project 6 132613848 132614177 - processed_pseudogene processed_pseudogene MGP_AJ_T0078439.1 MGP_AJ_G0030907.1 mouse_genomes_project 6 81548360 81564221 + MGP_AJ_P0078439 Atp6v1b1 protein_coding protein_coding MGP_AJ_T0078440.1 MGP_AJ_G0030907.1 mouse_genomes_project 6 81548419 81556166 + Atp6v1b1 protein_coding processed_transcript MGP_AJ_T0078441.1 MGP_AJ_G0030907.1 mouse_genomes_project 6 81548434 81556694 + MGP_AJ_P0078441 Atp6v1b1 protein_coding protein_coding MGP_AJ_T0078442.1 MGP_AJ_G0030907.1 mouse_genomes_project 6 81548464 81560122 + MGP_AJ_P0078442 Atp6v1b1 protein_coding protein_coding MGP_AJ_T0078443.1 MGP_AJ_G0030907.1 mouse_genomes_project 6 81557221 81559235 + Atp6v1b1 protein_coding retained_intron MGP_AJ_T0078444.1 MGP_AJ_G0030907.1 mouse_genomes_project 6 81562491 81563598 + Atp6v1b1 protein_coding retained_intron MGP_AJ_T0015442.1 MGP_AJ_G0013537.1 mouse_genomes_project 6 72868532 72869034 - processed_pseudogene processed_pseudogene MGP_AJ_T0008743.1 MGP_AJ_G0007066.1 mouse_genomes_project 6 126704089 126719063 - 9330102E08Rik lincRNA lincRNA MGP_AJ_T0077308.1 MGP_AJ_G0030627.1 mouse_genomes_project 6 39197962 39199001 - MGP_AJ_P0077308 Olfr457 protein_coding protein_coding MGP_AJ_T0077309.1 MGP_AJ_G0030627.1 mouse_genomes_project 6 39198035 39203136 - MGP_AJ_P0077309 Olfr457 protein_coding protein_coding MGP_AJ_T0077310.1 MGP_AJ_G0030627.1 mouse_genomes_project 6 39198603 39203126 - MGP_AJ_P0077310 Olfr457 protein_coding protein_coding MGP_AJ_T0079983.1 MGP_AJ_G0031199.1 mouse_genomes_project 6 120946286 120950965 - MGP_AJ_P0079983 Gdf3 protein_coding protein_coding MGP_AJ_T0079984.1 MGP_AJ_G0031199.1 mouse_genomes_project 6 120948904 120950702 - Gdf3 protein_coding processed_transcript MGP_AJ_T0005130.1 MGP_AJ_G0004377.1 mouse_genomes_project 6 147940755 147943018 + 3010003L21Rik antisense antisense MGP_AJ_T0005131.1 MGP_AJ_G0004377.1 mouse_genomes_project 6 147940755 147943010 + 3010003L21Rik antisense antisense MGP_AJ_T0100111.1 MGP_AJ_G0038077.1 mouse_genomes_project 6 110655080 110655187 - Gm23002 snRNA snRNA MGP_AJ_T0000203.1 MGP_AJ_G0000153.1 mouse_genomes_project 6 67924888 67925466 - MGP_AJ_P0000203 Igkv8-21 IG_V_gene IG_V_gene MGP_AJ_T0015429.1 MGP_AJ_G0013524.1 mouse_genomes_project 6 67937968 67938958 + processed_pseudogene processed_pseudogene MGP_AJ_T0015226.1 MGP_AJ_G0013321.1 mouse_genomes_project 6 984676 984923 - processed_pseudogene processed_pseudogene MGP_AJ_T0015457.1 MGP_AJ_G0013552.1 mouse_genomes_project 6 80675548 80676742 - processed_pseudogene processed_pseudogene MGP_AJ_T0078560.1 MGP_AJ_G0030926.1 mouse_genomes_project 6 83381621 83384090 - MGP_AJ_P0078560 Egr4 protein_coding protein_coding MGP_AJ_T0078596.1 MGP_AJ_G0030935.1 mouse_genomes_project 6 83909554 83914182 + Figla protein_coding processed_transcript MGP_AJ_T0078597.1 MGP_AJ_G0030935.1 mouse_genomes_project 6 83910581 83914392 + MGP_AJ_P0078597 Figla protein_coding protein_coding MGP_AJ_T0080712.1 MGP_AJ_G0031394.1 mouse_genomes_project 6 134132536 134133815 - MGP_AJ_P0080712 Pbp2 protein_coding protein_coding MGP_AJ_T0077227.1 MGP_AJ_G0030598.1 mouse_genomes_project 6 38065249 38069988 - MGP_AJ_P0077227 protein_coding protein_coding MGP_AJ_T0077228.1 MGP_AJ_G0030598.1 mouse_genomes_project 6 38065304 38072118 - MGP_AJ_P0077228 protein_coding protein_coding MGP_AJ_T0080357.1 MGP_AJ_G0031279.1 mouse_genomes_project 6 125432401 125463979 - MGP_AJ_P0080357 Rad51ap1 protein_coding protein_coding MGP_AJ_T0080358.1 MGP_AJ_G0031279.1 mouse_genomes_project 6 125432766 125435164 - Rad51ap1 protein_coding retained_intron MGP_AJ_T0080359.1 MGP_AJ_G0031279.1 mouse_genomes_project 6 125432766 125463979 - MGP_AJ_P0080359 Rad51ap1 protein_coding protein_coding MGP_AJ_T0080360.1 MGP_AJ_G0031279.1 mouse_genomes_project 6 125433530 125435070 - Rad51ap1 protein_coding processed_transcript MGP_AJ_T0080361.1 MGP_AJ_G0031279.1 mouse_genomes_project 6 125434341 125437607 - Rad51ap1 protein_coding retained_intron MGP_AJ_T0080362.1 MGP_AJ_G0031279.1 mouse_genomes_project 6 125435696 125463963 - MGP_AJ_P0080362 Rad51ap1 protein_coding protein_coding MGP_AJ_T0080363.1 MGP_AJ_G0031279.1 mouse_genomes_project 6 125435712 125437445 - Rad51ap1 protein_coding retained_intron MGP_AJ_T0080364.1 MGP_AJ_G0031279.1 mouse_genomes_project 6 125436981 125463938 - Rad51ap1 protein_coding processed_transcript MGP_AJ_T0080365.1 MGP_AJ_G0031279.1 mouse_genomes_project 6 125437443 125463967 - MGP_AJ_P0080365 Rad51ap1 protein_coding nonsense_mediated_decay MGP_AJ_T0080366.1 MGP_AJ_G0031279.1 mouse_genomes_project 6 125438014 125463979 - Rad51ap1 protein_coding retained_intron MGP_AJ_T0010816.1 MGP_AJ_G0008938.1 mouse_genomes_project 6 128249017 128249126 + Mir680-1 miRNA miRNA MGP_AJ_T0079367.1 MGP_AJ_G0031087.1 mouse_genomes_project 6 111406937 111417763 - MGP_AJ_P0079367 Camk1 protein_coding protein_coding MGP_AJ_T0079368.1 MGP_AJ_G0031087.1 mouse_genomes_project 6 111406941 111409435 - Camk1 protein_coding retained_intron MGP_AJ_T0079369.1 MGP_AJ_G0031087.1 mouse_genomes_project 6 111406950 111417683 - Camk1 protein_coding retained_intron MGP_AJ_T0079370.1 MGP_AJ_G0031087.1 mouse_genomes_project 6 111410729 111414696 - Camk1 protein_coding retained_intron MGP_AJ_T0079371.1 MGP_AJ_G0031087.1 mouse_genomes_project 6 111411901 111417757 - MGP_AJ_P0079371 Camk1 protein_coding protein_coding MGP_AJ_T0079372.1 MGP_AJ_G0031087.1 mouse_genomes_project 6 111414681 111417742 - Camk1 protein_coding retained_intron MGP_AJ_T0005126.1 MGP_AJ_G0004374.1 mouse_genomes_project 6 146451192 146489324 - Gm6288 antisense antisense MGP_AJ_T0005127.1 MGP_AJ_G0004374.1 mouse_genomes_project 6 146488642 146489555 - Gm6288 antisense antisense MGP_AJ_T0011630.1 MGP_AJ_G0009752.1 mouse_genomes_project 6 14560159 14560279 + Gm27402 misc_RNA misc_RNA MGP_AJ_T0077024.1 MGP_AJ_G0030546.1 mouse_genomes_project 6 33059975 33205290 + MGP_AJ_P0077024 Chrm2 protein_coding protein_coding MGP_AJ_T0077025.1 MGP_AJ_G0030546.1 mouse_genomes_project 6 33060086 33119347 + Chrm2 protein_coding processed_transcript MGP_AJ_T0101382.1 MGP_AJ_G0039348.1 mouse_genomes_project 6 122471603 122471679 - Gm24843 snoRNA snoRNA MGP_AJ_T0079214.1 MGP_AJ_G0031061.1 mouse_genomes_project 6 102576730 102738491 + MGP_AJ_P0079214 Cntn6 protein_coding protein_coding MGP_AJ_T0079215.1 MGP_AJ_G0031061.1 mouse_genomes_project 6 102576994 102662225 + Cntn6 protein_coding retained_intron MGP_AJ_T0079216.1 MGP_AJ_G0031061.1 mouse_genomes_project 6 102658379 102963009 + MGP_AJ_P0079216 Cntn6 protein_coding protein_coding MGP_AJ_T0002173.1 MGP_AJ_G0002085.1 mouse_genomes_project 6 143014114 143016242 - TEC TEC MGP_AJ_T0100090.1 MGP_AJ_G0038056.1 mouse_genomes_project 6 60245837 60245943 - Gm22212 snRNA snRNA MGP_AJ_T0080796.1 MGP_AJ_G0031412.1 mouse_genomes_project 6 136684868 136701696 + MGP_AJ_P0080796 Strap protein_coding protein_coding MGP_AJ_T0080797.1 MGP_AJ_G0031412.1 mouse_genomes_project 6 136694830 136698517 + Strap protein_coding processed_transcript MGP_AJ_T0080798.1 MGP_AJ_G0031412.1 mouse_genomes_project 6 136698988 136700440 + Strap protein_coding retained_intron MGP_AJ_T0079858.1 MGP_AJ_G0031174.1 mouse_genomes_project 6 118639443 118644312 - MGP_AJ_P0079858 Cecr6 protein_coding protein_coding MGP_AJ_T0004942.1 MGP_AJ_G0004242.1 mouse_genomes_project 6 40048726 40050040 - Gm44731 antisense antisense MGP_AJ_T0015303.1 MGP_AJ_G0013398.1 mouse_genomes_project 6 36386250 36386766 - processed_pseudogene processed_pseudogene MGP_AJ_T0008696.1 MGP_AJ_G0007024.1 mouse_genomes_project 6 97978500 97990946 - Gm43067 lincRNA lincRNA MGP_AJ_T0080911.1 MGP_AJ_G0031433.1 mouse_genomes_project 6 141089461 141187555 - MGP_AJ_P0080911 Slco1a6 protein_coding protein_coding MGP_AJ_T0080912.1 MGP_AJ_G0031433.1 mouse_genomes_project 6 141123408 141187551 - Slco1a6 protein_coding retained_intron MGP_AJ_T0080913.1 MGP_AJ_G0031433.1 mouse_genomes_project 6 141166001 141213970 - MGP_AJ_P0080913 Slco1a6 protein_coding protein_coding MGP_AJ_T0015373.1 MGP_AJ_G0013468.1 mouse_genomes_project 6 59373504 59375040 - processed_pseudogene processed_pseudogene MGP_AJ_T0079914.1 MGP_AJ_G0031185.1 mouse_genomes_project 6 119455253 119493097 + MGP_AJ_P0079914 Slc6a13 protein_coding protein_coding MGP_AJ_T0079915.1 MGP_AJ_G0031185.1 mouse_genomes_project 6 119455315 119488954 + Slc6a13 protein_coding retained_intron MGP_AJ_T0079916.1 MGP_AJ_G0031185.1 mouse_genomes_project 6 119455315 119458327 + Slc6a13 protein_coding retained_intron MGP_AJ_T0079917.1 MGP_AJ_G0031185.1 mouse_genomes_project 6 119455808 119479708 + MGP_AJ_P0079917 Slc6a13 protein_coding protein_coding MGP_AJ_T0004946.1 MGP_AJ_G0004246.1 mouse_genomes_project 6 47367619 47395846 + 5430402O13Rik antisense antisense MGP_AJ_T0004947.1 MGP_AJ_G0004246.1 mouse_genomes_project 6 47367714 47395803 + 5430402O13Rik antisense antisense MGP_AJ_T0076941.1 MGP_AJ_G0030533.1 mouse_genomes_project 6 31167534 31194384 + MGP_AJ_P0076941 Bpgm protein_coding protein_coding MGP_AJ_T0076942.1 MGP_AJ_G0030533.1 mouse_genomes_project 6 31167683 31180393 + Bpgm protein_coding retained_intron MGP_AJ_T0076943.1 MGP_AJ_G0030533.1 mouse_genomes_project 6 31167779 31178997 + MGP_AJ_P0076943 Bpgm protein_coding protein_coding MGP_AJ_T0076944.1 MGP_AJ_G0030533.1 mouse_genomes_project 6 31167806 31179057 + MGP_AJ_P0076944 Bpgm protein_coding protein_coding MGP_AJ_T0076945.1 MGP_AJ_G0030533.1 mouse_genomes_project 6 31168469 31179158 + MGP_AJ_P0076945 Bpgm protein_coding protein_coding MGP_AJ_T0001994.1 MGP_AJ_G0001907.1 mouse_genomes_project 6 54589694 54592536 - TEC TEC MGP_AJ_T0011671.1 MGP_AJ_G0009793.1 mouse_genomes_project 6 139476185 139476438 + Gm25780 misc_RNA misc_RNA MGP_AJ_T0002572.1 MGP_AJ_G0002472.1 mouse_genomes_project 6 38305331 38305378 + MGP_AJ_P0002572 Trbj2-7 TR_J_gene TR_J_gene MGP_AJ_T0015271.1 MGP_AJ_G0013366.1 mouse_genomes_project 6 17635919 17636472 - processed_pseudogene processed_pseudogene MGP_AJ_T0080454.1 MGP_AJ_G0031299.1 mouse_genomes_project 6 127028815 127072916 - MGP_AJ_P0080454 protein_coding protein_coding MGP_AJ_T0080455.1 MGP_AJ_G0031299.1 mouse_genomes_project 6 127030547 127032833 - protein_coding processed_transcript MGP_AJ_T0080456.1 MGP_AJ_G0031299.1 mouse_genomes_project 6 127038571 127040447 - protein_coding retained_intron MGP_AJ_T0080457.1 MGP_AJ_G0031299.1 mouse_genomes_project 6 127067094 127072899 - MGP_AJ_P0080457 protein_coding protein_coding MGP_AJ_T0078653.1 MGP_AJ_G0030942.1 mouse_genomes_project 6 84327178 84347567 + MGP_AJ_P0078653 Gm44790 protein_coding nonsense_mediated_decay MGP_AJ_T0101395.1 MGP_AJ_G0039361.1 mouse_genomes_project 6 144518979 144519094 + Gm25373 snoRNA snoRNA MGP_AJ_T0010773.1 MGP_AJ_G0008895.1 mouse_genomes_project 6 68982105 68982236 + Mir8112 miRNA miRNA MGP_AJ_T0079177.1 MGP_AJ_G0031050.1 mouse_genomes_project 6 97336838 97754661 - MGP_AJ_P0079177 Gm20696 protein_coding nonsense_mediated_decay MGP_AJ_T0079180.1 MGP_AJ_G0031050.1 mouse_genomes_project 6 97516733 97528487 - Gm20696 protein_coding retained_intron MGP_AJ_T0079181.1 MGP_AJ_G0031050.1 mouse_genomes_project 6 97516764 97720287 - Gm20696 protein_coding retained_intron MGP_AJ_T0001992.1 MGP_AJ_G0001905.1 mouse_genomes_project 6 53758491 53759163 - TEC TEC MGP_AJ_T0010776.1 MGP_AJ_G0008898.1 mouse_genomes_project 6 79677980 79678058 - Mir468 miRNA miRNA MGP_AJ_T0078828.1 MGP_AJ_G0030979.1 mouse_genomes_project 6 86664914 86666461 + Mgll protein_coding processed_transcript MGP_AJ_T0078829.1 MGP_AJ_G0030979.1 mouse_genomes_project 6 86664925 86768530 + MGP_AJ_P0078829 Mgll protein_coding nonsense_mediated_decay MGP_AJ_T0078830.1 MGP_AJ_G0030979.1 mouse_genomes_project 6 86664938 86771133 + MGP_AJ_P0078830 Mgll protein_coding protein_coding MGP_AJ_T0078831.1 MGP_AJ_G0030979.1 mouse_genomes_project 6 86665040 86708047 + MGP_AJ_P0078831 Mgll protein_coding protein_coding MGP_AJ_T0078832.1 MGP_AJ_G0030979.1 mouse_genomes_project 6 86665495 86771017 + MGP_AJ_P0078832 Mgll protein_coding nonsense_mediated_decay MGP_AJ_T0078833.1 MGP_AJ_G0030979.1 mouse_genomes_project 6 86665569 86773533 + MGP_AJ_P0078833 Mgll protein_coding protein_coding MGP_AJ_T0078834.1 MGP_AJ_G0030979.1 mouse_genomes_project 6 86768276 86770977 + Mgll protein_coding retained_intron MGP_AJ_T0077949.1 MGP_AJ_G0030799.1 mouse_genomes_project 6 62592291 62699643 + MGP_AJ_P0077949 Tnip3 protein_coding unknown_likely_coding MGP_AJ_T0077950.1 MGP_AJ_G0030799.1 mouse_genomes_project 6 62657656 62702575 + MGP_AJ_P0077950 Tnip3 protein_coding protein_coding MGP_AJ_T0077951.1 MGP_AJ_G0030799.1 mouse_genomes_project 6 62657674 62667433 + Tnip3 protein_coding retained_intron MGP_AJ_T0077952.1 MGP_AJ_G0030799.1 mouse_genomes_project 6 62657686 62658920 + Tnip3 protein_coding processed_transcript MGP_AJ_T0077953.1 MGP_AJ_G0030799.1 mouse_genomes_project 6 62657717 62660959 + Tnip3 protein_coding retained_intron MGP_AJ_T0077954.1 MGP_AJ_G0030799.1 mouse_genomes_project 6 62657745 62662372 + Tnip3 protein_coding retained_intron MGP_AJ_T0077955.1 MGP_AJ_G0030799.1 mouse_genomes_project 6 62664832 62667456 + Tnip3 protein_coding retained_intron MGP_AJ_T0078922.1 MGP_AJ_G0031003.1 mouse_genomes_project 6 88371151 88402550 + MGP_AJ_P0078922 Uroc1 protein_coding protein_coding MGP_AJ_T0078923.1 MGP_AJ_G0031003.1 mouse_genomes_project 6 88371156 88402545 + MGP_AJ_P0078923 Uroc1 protein_coding protein_coding MGP_AJ_T0008725.1 MGP_AJ_G0007048.1 mouse_genomes_project 6 115732447 115792877 - lincRNA lincRNA MGP_AJ_T0102697.1 MGP_AJ_G0040439.1 mouse_genomes_project 6 63868460 63869360 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0077712.1 MGP_AJ_G0030729.1 mouse_genomes_project 6 51290947 51366418 + MGP_AJ_P0077712 Wipf3 protein_coding protein_coding MGP_AJ_T0077713.1 MGP_AJ_G0030729.1 mouse_genomes_project 6 51290947 51366418 + MGP_AJ_P0077713 Wipf3 protein_coding protein_coding MGP_AJ_T0077714.1 MGP_AJ_G0030729.1 mouse_genomes_project 6 51314898 51366421 + MGP_AJ_P0077714 Wipf3 protein_coding protein_coding MGP_AJ_T0077715.1 MGP_AJ_G0030729.1 mouse_genomes_project 6 51314898 51366421 + MGP_AJ_P0077715 Wipf3 protein_coding protein_coding MGP_AJ_T0077716.1 MGP_AJ_G0030729.1 mouse_genomes_project 6 51334643 51348015 + Wipf3 protein_coding processed_transcript MGP_AJ_T0077717.1 MGP_AJ_G0030729.1 mouse_genomes_project 6 51350560 51354196 + Wipf3 protein_coding retained_intron MGP_AJ_T0015451.1 MGP_AJ_G0013546.1 mouse_genomes_project 6 76235474 76235970 - processed_pseudogene processed_pseudogene MGP_AJ_T0076797.1 MGP_AJ_G0030507.1 mouse_genomes_project 6 26867886 26965871 - MGP_AJ_P0076797 Ube2h protein_coding protein_coding MGP_AJ_T0076798.1 MGP_AJ_G0030507.1 mouse_genomes_project 6 26871408 26901524 - Ube2h protein_coding processed_transcript MGP_AJ_T0076799.1 MGP_AJ_G0030507.1 mouse_genomes_project 6 26871460 26965854 - MGP_AJ_P0076799 Ube2h protein_coding protein_coding MGP_AJ_T0076800.1 MGP_AJ_G0030507.1 mouse_genomes_project 6 26878130 26965860 - Ube2h protein_coding processed_transcript MGP_AJ_T0079400.1 MGP_AJ_G0031093.1 mouse_genomes_project 6 111519686 111525348 + MGP_AJ_P0079400 Jagn1 protein_coding protein_coding MGP_AJ_T0079401.1 MGP_AJ_G0031093.1 mouse_genomes_project 6 111519712 111522127 + Jagn1 protein_coding retained_intron MGP_AJ_T0079402.1 MGP_AJ_G0031093.1 mouse_genomes_project 6 111519727 111525328 + MGP_AJ_P0079402 Jagn1 protein_coding protein_coding MGP_AJ_T0008562.1 MGP_AJ_G0006925.1 mouse_genomes_project 6 28471421 28590251 + Gm13849 lincRNA lincRNA MGP_AJ_T0076306.1 MGP_AJ_G0030412.1 mouse_genomes_project 6 3331257 3352709 - MGP_AJ_P0076306 Shfm1 protein_coding protein_coding MGP_AJ_T0076307.1 MGP_AJ_G0030412.1 mouse_genomes_project 6 3350493 3352714 - Shfm1 protein_coding retained_intron MGP_AJ_T0078033.1 MGP_AJ_G0030825.1 mouse_genomes_project 6 68982111 68995754 + MGP_AJ_P0078033 Krcc1 protein_coding protein_coding MGP_AJ_T0078034.1 MGP_AJ_G0030825.1 mouse_genomes_project 6 68982135 68994675 + MGP_AJ_P0078034 Krcc1 protein_coding protein_coding MGP_AJ_T0078035.1 MGP_AJ_G0030825.1 mouse_genomes_project 6 68982453 68995754 + MGP_AJ_P0078035 Krcc1 protein_coding protein_coding MGP_AJ_T0078036.1 MGP_AJ_G0030825.1 mouse_genomes_project 6 68992714 68995753 + MGP_AJ_P0078036 Krcc1 protein_coding protein_coding MGP_AJ_T0080514.1 MGP_AJ_G0031317.1 mouse_genomes_project 6 127972256 127979928 + MGP_AJ_P0080514 Clec1b protein_coding protein_coding MGP_AJ_T0080515.1 MGP_AJ_G0031317.1 mouse_genomes_project 6 127972264 127982711 + MGP_AJ_P0080515 Clec1b protein_coding protein_coding MGP_AJ_T0080516.1 MGP_AJ_G0031317.1 mouse_genomes_project 6 127978199 127984000 + Clec1b protein_coding retained_intron MGP_AJ_T0080103.1 MGP_AJ_G0031234.1 mouse_genomes_project 6 123230232 123247060 - MGP_AJ_P0080103 protein_coding nonsense_mediated_decay MGP_AJ_T0079652.1 MGP_AJ_G0031138.1 mouse_genomes_project 6 114587601 114593246 + MGP_AJ_P0079652 Olfr211 protein_coding protein_coding MGP_AJ_T0079653.1 MGP_AJ_G0031138.1 mouse_genomes_project 6 114592316 114593246 + MGP_AJ_P0079653 Olfr211 protein_coding protein_coding MGP_AJ_T0015307.1 MGP_AJ_G0013402.1 mouse_genomes_project 6 37764101 37764289 - processed_pseudogene processed_pseudogene MGP_AJ_T0081101.1 MGP_AJ_G0031465.1 mouse_genomes_project 6 145735158 145792036 + MGP_AJ_P0081101 Stk38l protein_coding protein_coding MGP_AJ_T0081102.1 MGP_AJ_G0031465.1 mouse_genomes_project 6 145735481 145770686 + MGP_AJ_P0081102 Stk38l protein_coding protein_coding MGP_AJ_T0078676.1 MGP_AJ_G0030949.1 mouse_genomes_project 6 84643366 84699127 - MGP_AJ_P0078676 Anxa4 protein_coding unknown_likely_coding MGP_AJ_T0078677.1 MGP_AJ_G0030949.1 mouse_genomes_project 6 84643370 84672276 - MGP_AJ_P0078677 Anxa4 protein_coding protein_coding MGP_AJ_T0078678.1 MGP_AJ_G0030949.1 mouse_genomes_project 6 84643371 84699159 - MGP_AJ_P0078678 Anxa4 protein_coding protein_coding MGP_AJ_T0078679.1 MGP_AJ_G0030949.1 mouse_genomes_project 6 84643377 84672190 - MGP_AJ_P0078679 Anxa4 protein_coding nonsense_mediated_decay MGP_AJ_T0078680.1 MGP_AJ_G0030949.1 mouse_genomes_project 6 84648485 84672173 - MGP_AJ_P0078680 Anxa4 protein_coding protein_coding MGP_AJ_T0078681.1 MGP_AJ_G0030949.1 mouse_genomes_project 6 84648492 84699139 - MGP_AJ_P0078681 Anxa4 protein_coding protein_coding MGP_AJ_T0078682.1 MGP_AJ_G0030949.1 mouse_genomes_project 6 84649717 84699139 - MGP_AJ_P0078682 Anxa4 protein_coding protein_coding MGP_AJ_T0078683.1 MGP_AJ_G0030949.1 mouse_genomes_project 6 84654064 84672276 - Anxa4 protein_coding retained_intron MGP_AJ_T0078194.1 MGP_AJ_G0030853.1 mouse_genomes_project 6 70354755 70521318 - MGP_AJ_P0078194 Tcf7l1 protein_coding protein_coding MGP_AJ_T0078195.1 MGP_AJ_G0030853.1 mouse_genomes_project 6 70355640 70521016 - MGP_AJ_P0078195 Tcf7l1 protein_coding protein_coding MGP_AJ_T0078196.1 MGP_AJ_G0030853.1 mouse_genomes_project 6 70355959 70359051 - Tcf7l1 protein_coding processed_transcript MGP_AJ_T0078197.1 MGP_AJ_G0030853.1 mouse_genomes_project 6 70361756 70520662 - MGP_AJ_P0078197 Tcf7l1 protein_coding protein_coding MGP_AJ_T0078198.1 MGP_AJ_G0030853.1 mouse_genomes_project 6 70378399 70400910 - Tcf7l1 protein_coding processed_transcript MGP_AJ_T0005077.1 MGP_AJ_G0004332.1 mouse_genomes_project 6 123223231 123229084 + Gm20531 antisense antisense MGP_AJ_T0077345.1 MGP_AJ_G0030647.1 mouse_genomes_project 6 39992195 39999658 + MGP_AJ_P0077345 Olfr434 protein_coding protein_coding MGP_AJ_T0077346.1 MGP_AJ_G0030647.1 mouse_genomes_project 6 39999159 40001726 + MGP_AJ_P0077346 Olfr434 protein_coding protein_coding MGP_AJ_T0079005.1 MGP_AJ_G0031019.1 mouse_genomes_project 6 89738363 89789796 + Slc6a6 protein_coding processed_transcript MGP_AJ_T0079006.1 MGP_AJ_G0031019.1 mouse_genomes_project 6 89738389 89781538 + Slc6a6 protein_coding retained_intron MGP_AJ_T0079007.1 MGP_AJ_G0031019.1 mouse_genomes_project 6 89738414 89779549 + MGP_AJ_P0079007 Slc6a6 protein_coding protein_coding MGP_AJ_T0079008.1 MGP_AJ_G0031019.1 mouse_genomes_project 6 89738422 89779584 + MGP_AJ_P0079008 Slc6a6 protein_coding protein_coding MGP_AJ_T0079009.1 MGP_AJ_G0031019.1 mouse_genomes_project 6 89738443 89753613 + Slc6a6 protein_coding retained_intron MGP_AJ_T0079010.1 MGP_AJ_G0031019.1 mouse_genomes_project 6 89741720 89813708 + MGP_AJ_P0079010 Slc6a6 protein_coding protein_coding MGP_AJ_T0079011.1 MGP_AJ_G0031019.1 mouse_genomes_project 6 89756074 89779470 + MGP_AJ_P0079011 Slc6a6 protein_coding protein_coding MGP_AJ_T0079012.1 MGP_AJ_G0031019.1 mouse_genomes_project 6 89779565 89799680 + MGP_AJ_P0079012 Slc6a6 protein_coding nonsense_mediated_decay MGP_AJ_T0079013.1 MGP_AJ_G0031019.1 mouse_genomes_project 6 89794264 89795710 + Slc6a6 protein_coding retained_intron MGP_AJ_T0079014.1 MGP_AJ_G0031019.1 mouse_genomes_project 6 89803006 89804811 + Slc6a6 protein_coding retained_intron MGP_AJ_T0079015.1 MGP_AJ_G0031019.1 mouse_genomes_project 6 89804824 89807419 + Slc6a6 protein_coding retained_intron MGP_AJ_T0010777.1 MGP_AJ_G0008899.1 mouse_genomes_project 6 80840059 80840122 + Mir7040 miRNA miRNA MGP_AJ_T0077011.1 MGP_AJ_G0030542.1 mouse_genomes_project 6 31872148 31942978 + MGP_AJ_P0077011 Nup205 protein_coding protein_coding MGP_AJ_T0077012.1 MGP_AJ_G0030542.1 mouse_genomes_project 6 31872157 31942978 + MGP_AJ_P0077012 Nup205 protein_coding protein_coding MGP_AJ_T0077013.1 MGP_AJ_G0030542.1 mouse_genomes_project 6 31872343 31901043 + Nup205 protein_coding retained_intron MGP_AJ_T0077014.1 MGP_AJ_G0030542.1 mouse_genomes_project 6 31872356 31942972 + MGP_AJ_P0077014 Nup205 protein_coding protein_coding MGP_AJ_T0077015.1 MGP_AJ_G0030542.1 mouse_genomes_project 6 31900436 31942978 + Nup205 protein_coding processed_transcript MGP_AJ_T0077016.1 MGP_AJ_G0030542.1 mouse_genomes_project 6 31919952 31933551 + Nup205 protein_coding retained_intron MGP_AJ_T0077017.1 MGP_AJ_G0030542.1 mouse_genomes_project 6 31940555 31941854 + Nup205 protein_coding retained_intron MGP_AJ_T0076715.1 MGP_AJ_G0030497.1 mouse_genomes_project 6 26108010 26110788 + MGP_AJ_P0076715 Atp6v1f protein_coding protein_coding MGP_AJ_T0076716.1 MGP_AJ_G0030497.1 mouse_genomes_project 6 26108360 26110788 + MGP_AJ_P0076716 Atp6v1f protein_coding protein_coding MGP_AJ_T0076717.1 MGP_AJ_G0030497.1 mouse_genomes_project 6 26108360 26110788 + MGP_AJ_P0076717 Atp6v1f protein_coding protein_coding MGP_AJ_T0077088.1 MGP_AJ_G0030561.1 mouse_genomes_project 6 35264394 35319349 + MGP_AJ_P0077088 Luc7l2 protein_coding protein_coding MGP_AJ_T0077089.1 MGP_AJ_G0030561.1 mouse_genomes_project 6 35264525 35320710 + MGP_AJ_P0077089 Luc7l2 protein_coding protein_coding MGP_AJ_T0077090.1 MGP_AJ_G0030561.1 mouse_genomes_project 6 35264525 35323978 + MGP_AJ_P0077090 Luc7l2 protein_coding protein_coding MGP_AJ_T0077091.1 MGP_AJ_G0030561.1 mouse_genomes_project 6 35264574 35323976 + MGP_AJ_P0077091 Luc7l2 protein_coding nonsense_mediated_decay MGP_AJ_T0077092.1 MGP_AJ_G0030561.1 mouse_genomes_project 6 35264591 35270979 + Luc7l2 protein_coding processed_transcript MGP_AJ_T0077093.1 MGP_AJ_G0030561.1 mouse_genomes_project 6 35264591 35271110 + Luc7l2 protein_coding retained_intron MGP_AJ_T0077094.1 MGP_AJ_G0030561.1 mouse_genomes_project 6 35264591 35267068 + Luc7l2 protein_coding processed_transcript MGP_AJ_T0077095.1 MGP_AJ_G0030561.1 mouse_genomes_project 6 35264863 35323935 + MGP_AJ_P0077095 Luc7l2 protein_coding protein_coding MGP_AJ_T0077096.1 MGP_AJ_G0030561.1 mouse_genomes_project 6 35264903 35299607 + Luc7l2 protein_coding processed_transcript MGP_AJ_T0077097.1 MGP_AJ_G0030561.1 mouse_genomes_project 6 35268783 35303606 + MGP_AJ_P0077097 Luc7l2 protein_coding nonsense_mediated_decay MGP_AJ_T0077098.1 MGP_AJ_G0030561.1 mouse_genomes_project 6 35270701 35323279 + MGP_AJ_P0077098 Luc7l2 protein_coding nonsense_mediated_decay MGP_AJ_T0077099.1 MGP_AJ_G0030561.1 mouse_genomes_project 6 35272275 35282535 + Luc7l2 protein_coding retained_intron MGP_AJ_T0077100.1 MGP_AJ_G0030561.1 mouse_genomes_project 6 35283071 35320335 + Luc7l2 protein_coding retained_intron MGP_AJ_T0005047.1 MGP_AJ_G0004308.1 mouse_genomes_project 6 100366087 100406717 + Gm44188 antisense antisense MGP_AJ_T0005048.1 MGP_AJ_G0004308.1 mouse_genomes_project 6 100366109 100436238 + Gm44188 antisense antisense MGP_AJ_T0004999.1 MGP_AJ_G0004279.1 mouse_genomes_project 6 81817364 81820592 - Gm43918 antisense antisense MGP_AJ_T0002141.1 MGP_AJ_G0002053.1 mouse_genomes_project 6 125849177 125849547 - TEC TEC MGP_AJ_T0000184.1 MGP_AJ_G0000140.1 mouse_genomes_project 6 67453439 67453726 - MGP_AJ_P0000184 Igkv5-39 IG_V_gene IG_V_gene MGP_AJ_T0000185.1 MGP_AJ_G0000140.1 mouse_genomes_project 6 67453439 67453993 - MGP_AJ_P0000185 Igkv5-39 IG_V_gene IG_V_gene MGP_AJ_T0078612.1 MGP_AJ_G0030938.1 mouse_genomes_project 6 84263073 84267487 + MGP_AJ_P0078612 Fam136a protein_coding protein_coding MGP_AJ_T0078613.1 MGP_AJ_G0030938.1 mouse_genomes_project 6 84263141 84264447 + Fam136a protein_coding retained_intron MGP_AJ_T0078614.1 MGP_AJ_G0030938.1 mouse_genomes_project 6 84263151 84266227 + MGP_AJ_P0078614 Fam136a protein_coding nonsense_mediated_decay MGP_AJ_T0015301.1 MGP_AJ_G0013396.1 mouse_genomes_project 6 35070467 35071707 - processed_pseudogene processed_pseudogene MGP_AJ_T0079675.1 MGP_AJ_G0031147.1 mouse_genomes_project 6 115264013 115270536 + MGP_AJ_P0079675 Cxcl12 protein_coding protein_coding MGP_AJ_T0079676.1 MGP_AJ_G0031147.1 mouse_genomes_project 6 115264052 115276833 + MGP_AJ_P0079676 Cxcl12 protein_coding protein_coding MGP_AJ_T0079677.1 MGP_AJ_G0031147.1 mouse_genomes_project 6 115264055 115271594 + Cxcl12 protein_coding retained_intron MGP_AJ_T0079678.1 MGP_AJ_G0031147.1 mouse_genomes_project 6 115264055 115276834 + MGP_AJ_P0079678 Cxcl12 protein_coding protein_coding MGP_AJ_T0077203.1 MGP_AJ_G0030585.1 mouse_genomes_project 6 37293790 37294732 - MGP_AJ_P0077203 Olfr461 protein_coding protein_coding MGP_AJ_T0102727.1 MGP_AJ_G0040468.1 mouse_genomes_project 6 131422372 131422737 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0076537.1 MGP_AJ_G0030455.1 mouse_genomes_project 6 18671092 18940117 + MGP_AJ_P0076537 Cped1 protein_coding protein_coding MGP_AJ_T0076538.1 MGP_AJ_G0030455.1 mouse_genomes_project 6 18671120 18695693 + Cped1 protein_coding processed_transcript MGP_AJ_T0076539.1 MGP_AJ_G0030455.1 mouse_genomes_project 6 18671120 18812702 + MGP_AJ_P0076539 Cped1 protein_coding nonsense_mediated_decay MGP_AJ_T0076540.1 MGP_AJ_G0030455.1 mouse_genomes_project 6 18671772 18811729 + MGP_AJ_P0076540 Cped1 protein_coding protein_coding MGP_AJ_T0076541.1 MGP_AJ_G0030455.1 mouse_genomes_project 6 18672068 18755991 + Cped1 protein_coding processed_transcript MGP_AJ_T0076542.1 MGP_AJ_G0030455.1 mouse_genomes_project 6 18703077 18923686 + MGP_AJ_P0076542 Cped1 protein_coding protein_coding MGP_AJ_T0076543.1 MGP_AJ_G0030455.1 mouse_genomes_project 6 18711974 18771684 + Cped1 protein_coding processed_transcript MGP_AJ_T0076544.1 MGP_AJ_G0030455.1 mouse_genomes_project 6 18818765 18829792 + Cped1 protein_coding retained_intron MGP_AJ_T0077841.1 MGP_AJ_G0030771.1 mouse_genomes_project 6 54329589 54330496 + MGP_AJ_P0077841 Vmn1r20 protein_coding protein_coding MGP_AJ_T0078281.1 MGP_AJ_G0030876.1 mouse_genomes_project 6 80700628 80728590 - MGP_AJ_P0078281 Sema4f protein_coding protein_coding MGP_AJ_T0078282.1 MGP_AJ_G0030876.1 mouse_genomes_project 6 80702813 80706125 - Sema4f protein_coding processed_transcript MGP_AJ_T0078283.1 MGP_AJ_G0030876.1 mouse_genomes_project 6 80704753 80728590 - Sema4f protein_coding retained_intron MGP_AJ_T0078284.1 MGP_AJ_G0030876.1 mouse_genomes_project 6 80707140 80728366 - MGP_AJ_P0078284 Sema4f protein_coding nonsense_mediated_decay MGP_AJ_T0002105.1 MGP_AJ_G0002018.1 mouse_genomes_project 6 99447001 99447960 - TEC TEC MGP_AJ_T0077975.1 MGP_AJ_G0030811.1 mouse_genomes_project 6 63916088 63917320 - MGP_AJ_P0077975 Vmn1r39 protein_coding protein_coding MGP_AJ_T0008618.1 MGP_AJ_G0006963.1 mouse_genomes_project 6 50672212 50674389 + Gm16499 lincRNA lincRNA MGP_AJ_T0008619.1 MGP_AJ_G0006963.1 mouse_genomes_project 6 50672213 50672279 + Gm16499 lincRNA lincRNA MGP_AJ_T0008506.1 MGP_AJ_G0006888.1 mouse_genomes_project 6 3228359 3256076 - Gm20617 lincRNA lincRNA MGP_AJ_T0008507.1 MGP_AJ_G0006888.1 mouse_genomes_project 6 3228763 3256241 - Gm20617 lincRNA lincRNA MGP_AJ_T0015404.1 MGP_AJ_G0013499.1 mouse_genomes_project 6 64093016 64093403 + processed_pseudogene processed_pseudogene MGP_AJ_T0008644.1 MGP_AJ_G0006986.1 mouse_genomes_project 6 70653613 70657621 + Gm26640 lincRNA lincRNA MGP_AJ_T0080065.1 MGP_AJ_G0031229.1 mouse_genomes_project 6 123153005 123194604 + Lpcat3 protein_coding retained_intron MGP_AJ_T0080066.1 MGP_AJ_G0031229.1 mouse_genomes_project 6 123153005 123194652 + MGP_AJ_P0080066 Lpcat3 protein_coding protein_coding MGP_AJ_T0080067.1 MGP_AJ_G0031229.1 mouse_genomes_project 6 123153150 123192524 + MGP_AJ_P0080067 Lpcat3 protein_coding nonsense_mediated_decay MGP_AJ_T0080068.1 MGP_AJ_G0031229.1 mouse_genomes_project 6 123153159 123189736 + Lpcat3 protein_coding retained_intron MGP_AJ_T0080069.1 MGP_AJ_G0031229.1 mouse_genomes_project 6 123153193 123190795 + Lpcat3 protein_coding retained_intron MGP_AJ_T0080070.1 MGP_AJ_G0031229.1 mouse_genomes_project 6 123191653 123192847 + Lpcat3 protein_coding retained_intron MGP_AJ_T0080071.1 MGP_AJ_G0031229.1 mouse_genomes_project 6 123192490 123193292 + Lpcat3 protein_coding processed_transcript MGP_AJ_T0080072.1 MGP_AJ_G0031229.1 mouse_genomes_project 6 123192988 123194162 + Lpcat3 protein_coding retained_intron MGP_AJ_T0080073.1 MGP_AJ_G0031229.1 mouse_genomes_project 6 123193238 123194251 + Lpcat3 protein_coding retained_intron MGP_AJ_T0011619.1 MGP_AJ_G0009741.1 mouse_genomes_project 6 3592257 3592464 + Gm27905 misc_RNA misc_RNA MGP_AJ_T0001946.1 MGP_AJ_G0001859.1 mouse_genomes_project 6 29730899 29733899 - TEC TEC MGP_AJ_T0008569.1 MGP_AJ_G0006932.1 mouse_genomes_project 6 31947934 31958719 + 1810058I24Rik lincRNA lincRNA MGP_AJ_T0008570.1 MGP_AJ_G0006932.1 mouse_genomes_project 6 31947996 31956918 + 1810058I24Rik lincRNA lincRNA MGP_AJ_T0008571.1 MGP_AJ_G0006932.1 mouse_genomes_project 6 31948012 31957303 + 1810058I24Rik lincRNA lincRNA MGP_AJ_T0005015.1 MGP_AJ_G0004287.1 mouse_genomes_project 6 85196679 85198685 + Gm44418 antisense antisense MGP_AJ_T0018280.1 MGP_AJ_G0015614.1 mouse_genomes_project 6 63984477 63985282 - 4930597O21Rik processed_transcript retained_intron MGP_AJ_T0018281.1 MGP_AJ_G0015614.1 mouse_genomes_project 6 63984479 63986315 - 4930597O21Rik processed_transcript bidirectional_promoter_lncRNA MGP_AJ_T0081039.1 MGP_AJ_G0031454.1 mouse_genomes_project 6 144255542 144289120 - MGP_AJ_P0081039 Kras protein_coding protein_coding MGP_AJ_T0081040.1 MGP_AJ_G0031454.1 mouse_genomes_project 6 144258845 144269698 - Kras protein_coding processed_transcript MGP_AJ_T0081041.1 MGP_AJ_G0031454.1 mouse_genomes_project 6 144259090 144289120 - MGP_AJ_P0081041 Kras protein_coding protein_coding MGP_AJ_T0081042.1 MGP_AJ_G0031454.1 mouse_genomes_project 6 144259114 144289058 - MGP_AJ_P0081042 Kras protein_coding protein_coding MGP_AJ_T0081043.1 MGP_AJ_G0031454.1 mouse_genomes_project 6 144259166 144289051 - MGP_AJ_P0081043 Kras protein_coding nonsense_mediated_decay MGP_AJ_T0081044.1 MGP_AJ_G0031454.1 mouse_genomes_project 6 144259481 144264428 - Kras protein_coding retained_intron MGP_AJ_T0081045.1 MGP_AJ_G0031454.1 mouse_genomes_project 6 144285584 144289083 - MGP_AJ_P0081045 Kras protein_coding protein_coding MGP_AJ_T0079918.1 MGP_AJ_G0031186.1 mouse_genomes_project 6 119499685 119521928 + MGP_AJ_P0079918 Slc6a12 protein_coding protein_coding MGP_AJ_T0079919.1 MGP_AJ_G0031186.1 mouse_genomes_project 6 119500008 119504217 + MGP_AJ_P0079919 Slc6a12 protein_coding protein_coding MGP_AJ_T0079920.1 MGP_AJ_G0031186.1 mouse_genomes_project 6 119503227 119522331 + MGP_AJ_P0079920 Slc6a12 protein_coding protein_coding MGP_AJ_T0079921.1 MGP_AJ_G0031186.1 mouse_genomes_project 6 119504028 119511932 + MGP_AJ_P0079921 Slc6a12 protein_coding nonsense_mediated_decay MGP_AJ_T0079922.1 MGP_AJ_G0031186.1 mouse_genomes_project 6 119504028 119521928 + MGP_AJ_P0079922 Slc6a12 protein_coding protein_coding MGP_AJ_T0079923.1 MGP_AJ_G0031186.1 mouse_genomes_project 6 119513425 119518504 + Slc6a12 protein_coding retained_intron MGP_AJ_T0079924.1 MGP_AJ_G0031186.1 mouse_genomes_project 6 119513438 119519920 + Slc6a12 protein_coding retained_intron MGP_AJ_T0079925.1 MGP_AJ_G0031186.1 mouse_genomes_project 6 119513523 119521928 + MGP_AJ_P0079925 Slc6a12 protein_coding nonsense_mediated_decay MGP_AJ_T0079926.1 MGP_AJ_G0031186.1 mouse_genomes_project 6 119513523 119521928 + MGP_AJ_P0079926 Slc6a12 protein_coding nonsense_mediated_decay MGP_AJ_T0079927.1 MGP_AJ_G0031186.1 mouse_genomes_project 6 119515570 119520450 + Slc6a12 protein_coding retained_intron MGP_AJ_T0076843.1 MGP_AJ_G0030515.1 mouse_genomes_project 6 27308026 27314172 + MGP_AJ_P0076843 Cpa1 protein_coding protein_coding MGP_AJ_T0076844.1 MGP_AJ_G0030515.1 mouse_genomes_project 6 27309149 27310683 + Cpa1 protein_coding retained_intron MGP_AJ_T0101360.1 MGP_AJ_G0039326.1 mouse_genomes_project 6 81643053 81643183 - Gm23014 snoRNA snoRNA MGP_AJ_T0008741.1 MGP_AJ_G0007064.1 mouse_genomes_project 6 126166273 126179739 + Gm43634 lincRNA lincRNA MGP_AJ_T0080619.1 MGP_AJ_G0031366.1 mouse_genomes_project 6 131551670 131552672 + MGP_AJ_P0080619 Tas2r110 protein_coding protein_coding MGP_AJ_T0008588.1 MGP_AJ_G0006940.1 mouse_genomes_project 6 44296174 44301217 + Gm26625 lincRNA lincRNA MGP_AJ_T0077766.1 MGP_AJ_G0030742.1 mouse_genomes_project 6 52237146 52243687 + Ghrhr protein_coding retained_intron MGP_AJ_T0077767.1 MGP_AJ_G0030742.1 mouse_genomes_project 6 52237194 52249168 + MGP_AJ_P0077767 Ghrhr protein_coding protein_coding MGP_AJ_T0077768.1 MGP_AJ_G0030742.1 mouse_genomes_project 6 52237216 52248957 + MGP_AJ_P0077768 Ghrhr protein_coding protein_coding MGP_AJ_T0015430.1 MGP_AJ_G0013525.1 mouse_genomes_project 6 68097526 68099423 - processed_pseudogene processed_pseudogene MGP_AJ_T0000054.1 MGP_AJ_G0000043.1 mouse_genomes_project 6 68429109 68429147 + MGP_AJ_P0000054 Igkj5 IG_J_gene IG_J_gene MGP_AJ_T0000055.1 MGP_AJ_G0000043.1 mouse_genomes_project 6 68429109 68429151 + Igkj5 IG_J_gene processed_transcript MGP_AJ_T0077976.1 MGP_AJ_G0030812.1 mouse_genomes_project 6 63986190 64101882 + MGP_AJ_P0077976 Gng12 protein_coding protein_coding MGP_AJ_T0077977.1 MGP_AJ_G0030812.1 mouse_genomes_project 6 63986216 64098461 + MGP_AJ_P0077977 Gng12 protein_coding protein_coding MGP_AJ_T0077978.1 MGP_AJ_G0030812.1 mouse_genomes_project 6 63986224 64098805 + MGP_AJ_P0077978 Gng12 protein_coding protein_coding MGP_AJ_T0077979.1 MGP_AJ_G0030812.1 mouse_genomes_project 6 63986227 64098821 + MGP_AJ_P0077979 Gng12 protein_coding protein_coding MGP_AJ_T0077980.1 MGP_AJ_G0030812.1 mouse_genomes_project 6 63986230 64098433 + MGP_AJ_P0077980 Gng12 protein_coding protein_coding MGP_AJ_T0077981.1 MGP_AJ_G0030812.1 mouse_genomes_project 6 63986233 64099618 + MGP_AJ_P0077981 Gng12 protein_coding protein_coding MGP_AJ_T0077982.1 MGP_AJ_G0030812.1 mouse_genomes_project 6 63986249 64098380 + MGP_AJ_P0077982 Gng12 protein_coding protein_coding MGP_AJ_T0077983.1 MGP_AJ_G0030812.1 mouse_genomes_project 6 63986342 64098678 + MGP_AJ_P0077983 Gng12 protein_coding protein_coding MGP_AJ_T0077984.1 MGP_AJ_G0030812.1 mouse_genomes_project 6 63986684 64098099 + MGP_AJ_P0077984 Gng12 protein_coding protein_coding MGP_AJ_T0002027.1 MGP_AJ_G0001940.1 mouse_genomes_project 6 75701574 75703627 + TEC TEC MGP_AJ_T0077852.1 MGP_AJ_G0030775.1 mouse_genomes_project 6 54608740 54646257 + MGP_AJ_P0077852 Lancl2 protein_coding protein_coding MGP_AJ_T0077853.1 MGP_AJ_G0030775.1 mouse_genomes_project 6 54608836 54645300 + MGP_AJ_P0077853 Lancl2 protein_coding protein_coding MGP_AJ_T0077854.1 MGP_AJ_G0030775.1 mouse_genomes_project 6 54609287 54646256 + MGP_AJ_P0077854 Lancl2 protein_coding nonsense_mediated_decay MGP_AJ_T0008686.1 MGP_AJ_G0007017.1 mouse_genomes_project 6 89168176 89169288 - Gm44278 lincRNA lincRNA MGP_AJ_T0001942.1 MGP_AJ_G0001855.1 mouse_genomes_project 6 26827888 26830110 + TEC TEC MGP_AJ_T0010757.1 MGP_AJ_G0008879.1 mouse_genomes_project 6 32178412 32178508 - Gm23053 miRNA miRNA MGP_AJ_T0098462.1 MGP_AJ_G0036446.1 mouse_genomes_project 6 66042039 66042321 - pseudogene pseudogene MGP_AJ_T0015499.1 MGP_AJ_G0013594.1 mouse_genomes_project 6 95536324 95538061 + processed_pseudogene processed_pseudogene MGP_AJ_T0076855.1 MGP_AJ_G0030517.1 mouse_genomes_project 6 27399057 27408054 + MGP_AJ_P0076855 Mest protein_coding protein_coding MGP_AJ_T0076856.1 MGP_AJ_G0030517.1 mouse_genomes_project 6 27399057 27418024 + MGP_AJ_P0076856 Mest protein_coding protein_coding MGP_AJ_T0076857.1 MGP_AJ_G0030517.1 mouse_genomes_project 6 27407307 27418028 + MGP_AJ_P0076857 Mest protein_coding protein_coding MGP_AJ_T0076858.1 MGP_AJ_G0030517.1 mouse_genomes_project 6 27408793 27418286 + MGP_AJ_P0076858 Mest protein_coding protein_coding MGP_AJ_T0076859.1 MGP_AJ_G0030517.1 mouse_genomes_project 6 27408845 27423912 + MGP_AJ_P0076859 Mest protein_coding protein_coding MGP_AJ_T0076860.1 MGP_AJ_G0030517.1 mouse_genomes_project 6 27413499 27423912 + MGP_AJ_P0076860 Mest protein_coding protein_coding MGP_AJ_T0076861.1 MGP_AJ_G0030517.1 mouse_genomes_project 6 27413502 27423915 + MGP_AJ_P0076861 Mest protein_coding protein_coding MGP_AJ_T0076862.1 MGP_AJ_G0030517.1 mouse_genomes_project 6 27413504 27414328 + Mest protein_coding processed_transcript MGP_AJ_T0076863.1 MGP_AJ_G0030517.1 mouse_genomes_project 6 27416231 27418592 + Mest protein_coding retained_intron MGP_AJ_T0076864.1 MGP_AJ_G0030517.1 mouse_genomes_project 6 27417525 27418590 + Mest protein_coding retained_intron MGP_AJ_T0076865.1 MGP_AJ_G0030517.1 mouse_genomes_project 6 27417538 27418600 + Mest protein_coding retained_intron MGP_AJ_T0010805.1 MGP_AJ_G0008927.1 mouse_genomes_project 6 119480957 119481036 - Gm24855 miRNA miRNA MGP_AJ_T0004959.1 MGP_AJ_G0004252.1 mouse_genomes_project 6 50670981 50721117 + Gm43938 antisense antisense MGP_AJ_T0001926.1 MGP_AJ_G0001839.1 mouse_genomes_project 6 14567983 14573588 + TEC TEC MGP_AJ_T0015486.1 MGP_AJ_G0013581.1 mouse_genomes_project 6 90631173 90632170 + processed_pseudogene processed_pseudogene MGP_AJ_T0008708.1 MGP_AJ_G0007033.1 mouse_genomes_project 6 103563117 103566961 - lincRNA lincRNA MGP_AJ_T0005628.1 MGP_AJ_G0004739.1 mouse_genomes_project 6 84759468 84760510 - 2610306M01Rik bidirectional_promoter_lncRNA bidirectional_promoter_lncRNA MGP_AJ_T0000313.1 MGP_AJ_G0000257.1 mouse_genomes_project 6 67660914 67661470 - IG_V_pseudogene IG_V_pseudogene MGP_AJ_T0002682.1 MGP_AJ_G0002563.1 mouse_genomes_project 6 37955875 37956368 + MGP_AJ_P0002682 Trbv21 TR_V_gene TR_V_gene MGP_AJ_T0002683.1 MGP_AJ_G0002563.1 mouse_genomes_project 6 37956080 37956370 + MGP_AJ_P0002683 Trbv21 TR_V_gene TR_V_gene MGP_AJ_T0011670.1 MGP_AJ_G0009792.1 mouse_genomes_project 6 126372772 126373071 + Gm23098 misc_RNA misc_RNA MGP_AJ_T0015551.1 MGP_AJ_G0013646.1 mouse_genomes_project 6 113866078 113866486 - processed_pseudogene processed_pseudogene MGP_AJ_T0080772.1 MGP_AJ_G0031409.1 mouse_genomes_project 6 135981971 136098377 - MGP_AJ_P0080772 Rerg protein_coding protein_coding MGP_AJ_T0080773.1 MGP_AJ_G0031409.1 mouse_genomes_project 6 135981977 136097599 - MGP_AJ_P0080773 Rerg protein_coding protein_coding MGP_AJ_T0080774.1 MGP_AJ_G0031409.1 mouse_genomes_project 6 135983249 136097552 - MGP_AJ_P0080774 Rerg protein_coding protein_coding MGP_AJ_T0080775.1 MGP_AJ_G0031409.1 mouse_genomes_project 6 135983539 136068085 - MGP_AJ_P0080775 Rerg protein_coding protein_coding MGP_AJ_T0080776.1 MGP_AJ_G0031409.1 mouse_genomes_project 6 136047732 136097575 - MGP_AJ_P0080776 Rerg protein_coding protein_coding MGP_AJ_T0101853.1 MGP_AJ_G0039742.1 mouse_genomes_project 6 121249407 121252503 - transcribed_processed_pseudogene processed_transcript MGP_AJ_T0101854.1 MGP_AJ_G0039742.1 mouse_genomes_project 6 121249822 121250092 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0015252.1 MGP_AJ_G0013347.1 mouse_genomes_project 6 10132074 10132570 - processed_pseudogene processed_pseudogene MGP_AJ_T0008744.1 MGP_AJ_G0007067.1 mouse_genomes_project 6 126723075 126745074 - lincRNA lincRNA MGP_AJ_T0008635.1 MGP_AJ_G0006977.1 mouse_genomes_project 6 68424297 68445609 + Gm43291 lincRNA lincRNA MGP_AJ_T0005062.1 MGP_AJ_G0004317.1 mouse_genomes_project 6 111795171 111796322 + Gm26982 antisense antisense MGP_AJ_T0079000.1 MGP_AJ_G0031018.1 mouse_genomes_project 6 89568742 89575468 + MGP_AJ_P0079000 Lsm3 protein_coding protein_coding MGP_AJ_T0079001.1 MGP_AJ_G0031018.1 mouse_genomes_project 6 89568771 89572684 + Lsm3 protein_coding retained_intron MGP_AJ_T0079002.1 MGP_AJ_G0031018.1 mouse_genomes_project 6 89568791 89570821 + Lsm3 protein_coding retained_intron MGP_AJ_T0079003.1 MGP_AJ_G0031018.1 mouse_genomes_project 6 89568861 89570332 + Lsm3 protein_coding retained_intron MGP_AJ_T0079004.1 MGP_AJ_G0031018.1 mouse_genomes_project 6 89568862 89575463 + MGP_AJ_P0079004 Lsm3 protein_coding protein_coding MGP_AJ_T0004914.1 MGP_AJ_G0004218.1 mouse_genomes_project 6 25964514 25964914 - Gm17172 antisense antisense MGP_AJ_T0015612.1 MGP_AJ_G0013707.1 mouse_genomes_project 6 127468131 127468831 + processed_pseudogene processed_pseudogene MGP_AJ_T0078372.1 MGP_AJ_G0030894.1 mouse_genomes_project 6 80948707 80955471 + MGP_AJ_P0078372 1700003E16Rik protein_coding protein_coding MGP_AJ_T0078373.1 MGP_AJ_G0030894.1 mouse_genomes_project 6 80948804 80955417 + MGP_AJ_P0078373 1700003E16Rik protein_coding protein_coding MGP_AJ_T0101389.1 MGP_AJ_G0039355.1 mouse_genomes_project 6 130057314 130057448 - Gm22362 snoRNA snoRNA MGP_AJ_T0077359.1 MGP_AJ_G0030651.1 mouse_genomes_project 6 40126658 40451396 - MGP_AJ_P0077359 Tpk1 protein_coding protein_coding MGP_AJ_T0077360.1 MGP_AJ_G0030651.1 mouse_genomes_project 6 40126730 40414336 - Tpk1 protein_coding processed_transcript MGP_AJ_T0077361.1 MGP_AJ_G0030651.1 mouse_genomes_project 6 40126931 40451293 - MGP_AJ_P0077361 Tpk1 protein_coding protein_coding MGP_AJ_T0077362.1 MGP_AJ_G0030651.1 mouse_genomes_project 6 40128499 40260125 - Tpk1 protein_coding processed_transcript MGP_AJ_T0077363.1 MGP_AJ_G0030651.1 mouse_genomes_project 6 40375922 40451337 - Tpk1 protein_coding processed_transcript MGP_AJ_T0077364.1 MGP_AJ_G0030651.1 mouse_genomes_project 6 40377374 40450999 - Tpk1 protein_coding processed_transcript MGP_AJ_T0004969.1 MGP_AJ_G0004262.1 mouse_genomes_project 6 64260254 64320063 - antisense antisense MGP_AJ_T0102708.1 MGP_AJ_G0040450.1 mouse_genomes_project 6 88271470 88272418 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0076598.1 MGP_AJ_G0030471.1 mouse_genomes_project 6 21369654 21381801 + MGP_AJ_P0076598 Hyal6 protein_coding protein_coding MGP_AJ_T0077036.1 MGP_AJ_G0030549.1 mouse_genomes_project 6 34019026 34137190 - MGP_AJ_P0077036 Creb3l2 protein_coding protein_coding MGP_AJ_T0077037.1 MGP_AJ_G0030549.1 mouse_genomes_project 6 34027409 34029653 - Creb3l2 protein_coding processed_transcript MGP_AJ_T0081216.1 MGP_AJ_G0031485.1 mouse_genomes_project 6 148161276 148192698 - MGP_AJ_P0081216 Amn1 protein_coding protein_coding MGP_AJ_T0081217.1 MGP_AJ_G0031485.1 mouse_genomes_project 6 148161396 148177358 - Amn1 protein_coding retained_intron MGP_AJ_T0081218.1 MGP_AJ_G0031485.1 mouse_genomes_project 6 148161706 148192650 - Amn1 protein_coding processed_transcript MGP_AJ_T0081219.1 MGP_AJ_G0031485.1 mouse_genomes_project 6 148161707 148192671 - MGP_AJ_P0081219 Amn1 protein_coding protein_coding MGP_AJ_T0081220.1 MGP_AJ_G0031485.1 mouse_genomes_project 6 148161712 148187480 - Amn1 protein_coding processed_transcript MGP_AJ_T0081221.1 MGP_AJ_G0031485.1 mouse_genomes_project 6 148161728 148187477 - MGP_AJ_P0081221 Amn1 protein_coding nonsense_mediated_decay MGP_AJ_T0081222.1 MGP_AJ_G0031485.1 mouse_genomes_project 6 148171043 148192667 - Amn1 protein_coding processed_transcript MGP_AJ_T0081223.1 MGP_AJ_G0031485.1 mouse_genomes_project 6 148173282 148192656 - Amn1 protein_coding retained_intron MGP_AJ_T0081224.1 MGP_AJ_G0031485.1 mouse_genomes_project 6 148173448 148192681 - Amn1 protein_coding processed_transcript MGP_AJ_T0081225.1 MGP_AJ_G0031485.1 mouse_genomes_project 6 148174860 148192673 - MGP_AJ_P0081225 Amn1 protein_coding protein_coding MGP_AJ_T0081226.1 MGP_AJ_G0031485.1 mouse_genomes_project 6 148176848 148192688 - Amn1 protein_coding retained_intron MGP_AJ_T0077462.1 MGP_AJ_G0030670.1 mouse_genomes_project 6 45380017 45403750 + MGP_AJ_P0077462 Gm45021 protein_coding protein_coding MGP_AJ_T0078530.1 MGP_AJ_G0030920.1 mouse_genomes_project 6 83197143 83239733 - MGP_AJ_P0078530 protein_coding protein_coding MGP_AJ_T0078531.1 MGP_AJ_G0030920.1 mouse_genomes_project 6 83197148 83239803 - MGP_AJ_P0078531 protein_coding protein_coding MGP_AJ_T0078532.1 MGP_AJ_G0030920.1 mouse_genomes_project 6 83199809 83203819 - protein_coding processed_transcript MGP_AJ_T0005030.1 MGP_AJ_G0004298.1 mouse_genomes_project 6 88632725 88635976 - Gm15756 antisense antisense MGP_AJ_T0000136.1 MGP_AJ_G0000104.1 mouse_genomes_project 6 64955698 64956164 + MGP_AJ_P0000136 Igkv14-130 IG_V_gene IG_V_gene MGP_AJ_T0000137.1 MGP_AJ_G0000104.1 mouse_genomes_project 6 64955698 64956164 + MGP_AJ_P0000137 Igkv14-130 IG_V_gene IG_V_gene MGP_AJ_T0005041.1 MGP_AJ_G0004304.1 mouse_genomes_project 6 96220698 96343899 + Gm32592 antisense antisense MGP_AJ_T0079445.1 MGP_AJ_G0031103.1 mouse_genomes_project 6 111717394 111775226 + MGP_AJ_P0079445 Irak2 protein_coding protein_coding MGP_AJ_T0079446.1 MGP_AJ_G0031103.1 mouse_genomes_project 6 111717415 111773998 + MGP_AJ_P0079446 Irak2 protein_coding protein_coding MGP_AJ_T0079447.1 MGP_AJ_G0031103.1 mouse_genomes_project 6 111717428 111746235 + Irak2 protein_coding retained_intron MGP_AJ_T0079448.1 MGP_AJ_G0031103.1 mouse_genomes_project 6 111717463 111753259 + MGP_AJ_P0079448 Irak2 protein_coding nonsense_mediated_decay MGP_AJ_T0079449.1 MGP_AJ_G0031103.1 mouse_genomes_project 6 111749075 111753165 + Irak2 protein_coding processed_transcript MGP_AJ_T0079450.1 MGP_AJ_G0031103.1 mouse_genomes_project 6 111750003 111773998 + Irak2 protein_coding retained_intron MGP_AJ_T0079451.1 MGP_AJ_G0031103.1 mouse_genomes_project 6 111770934 111774113 + Irak2 protein_coding retained_intron MGP_AJ_T0079452.1 MGP_AJ_G0031103.1 mouse_genomes_project 6 111772948 111774207 + Irak2 protein_coding processed_transcript MGP_AJ_T0015350.1 MGP_AJ_G0013445.1 mouse_genomes_project 6 49194118 49194399 - processed_pseudogene processed_pseudogene MGP_AJ_T0002077.1 MGP_AJ_G0001990.1 mouse_genomes_project 6 89222025 89222619 - TEC TEC MGP_AJ_T0078822.1 MGP_AJ_G0030978.1 mouse_genomes_project 6 86490149 86558843 - MGP_AJ_P0078822 Kbtbd12 protein_coding protein_coding MGP_AJ_T0078823.1 MGP_AJ_G0030978.1 mouse_genomes_project 6 86525268 86529440 - Kbtbd12 protein_coding retained_intron MGP_AJ_T0078824.1 MGP_AJ_G0030978.1 mouse_genomes_project 6 86553747 86567494 - Kbtbd12 protein_coding retained_intron MGP_AJ_T0078825.1 MGP_AJ_G0030978.1 mouse_genomes_project 6 86554026 86558519 - Kbtbd12 protein_coding processed_transcript MGP_AJ_T0078826.1 MGP_AJ_G0030978.1 mouse_genomes_project 6 86557432 86567491 - Kbtbd12 protein_coding retained_intron MGP_AJ_T0078827.1 MGP_AJ_G0030978.1 mouse_genomes_project 6 86558613 86578171 - MGP_AJ_P0078827 Kbtbd12 protein_coding protein_coding MGP_AJ_T0080375.1 MGP_AJ_G0031282.1 mouse_genomes_project 6 125598263 125606749 + MGP_AJ_P0080375 Fgf23 protein_coding protein_coding MGP_AJ_T0077902.1 MGP_AJ_G0030790.1 mouse_genomes_project 6 57815069 57921601 - MGP_AJ_P0077902 Snca protein_coding protein_coding MGP_AJ_T0077903.1 MGP_AJ_G0030790.1 mouse_genomes_project 6 57815073 57920750 - MGP_AJ_P0077903 Snca protein_coding protein_coding MGP_AJ_T0077905.1 MGP_AJ_G0030790.1 mouse_genomes_project 6 57900378 57919302 - Snca protein_coding processed_transcript MGP_AJ_T0077906.1 MGP_AJ_G0030790.1 mouse_genomes_project 6 57906390 57920618 - Snca protein_coding retained_intron MGP_AJ_T0005063.1 MGP_AJ_G0004318.1 mouse_genomes_project 6 112019771 112022239 + Gm15082 antisense antisense MGP_AJ_T0011617.1 MGP_AJ_G0009739.1 mouse_genomes_project 6 1099778 1100105 + Gm24442 misc_RNA misc_RNA MGP_AJ_T0077396.1 MGP_AJ_G0030656.1 mouse_genomes_project 6 44572980 44584513 - MGP_AJ_P0077396 Zfp786 protein_coding protein_coding MGP_AJ_T0077397.1 MGP_AJ_G0030656.1 mouse_genomes_project 6 44575372 44584214 - Zfp786 protein_coding processed_transcript MGP_AJ_T0077398.1 MGP_AJ_G0030656.1 mouse_genomes_project 6 44581828 44584150 - Zfp786 protein_coding retained_intron MGP_AJ_T0002128.1 MGP_AJ_G0002041.1 mouse_genomes_project 6 115239851 115240696 + TEC TEC MGP_AJ_T0002571.1 MGP_AJ_G0002471.1 mouse_genomes_project 6 38304974 38305023 + MGP_AJ_P0002571 Trbj2-5 TR_J_gene TR_J_gene MGP_AJ_T0015529.1 MGP_AJ_G0013624.1 mouse_genomes_project 6 107454001 107454449 - processed_pseudogene processed_pseudogene MGP_AJ_T0102717.1 MGP_AJ_G0040458.1 mouse_genomes_project 6 127498477 127498591 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0078073.1 MGP_AJ_G0030834.1 mouse_genomes_project 6 69550949 69597341 + MGP_AJ_P0078073 Immt protein_coding protein_coding MGP_AJ_T0078074.1 MGP_AJ_G0030834.1 mouse_genomes_project 6 69550961 69577423 + Immt protein_coding retained_intron MGP_AJ_T0078075.1 MGP_AJ_G0030834.1 mouse_genomes_project 6 69550962 69583340 + MGP_AJ_P0078075 Immt protein_coding protein_coding MGP_AJ_T0078076.1 MGP_AJ_G0030834.1 mouse_genomes_project 6 69550992 69597337 + MGP_AJ_P0078076 Immt protein_coding protein_coding MGP_AJ_T0078077.1 MGP_AJ_G0030834.1 mouse_genomes_project 6 69550995 69597341 + MGP_AJ_P0078077 Immt protein_coding protein_coding MGP_AJ_T0078078.1 MGP_AJ_G0030834.1 mouse_genomes_project 6 69551000 69597330 + MGP_AJ_P0078078 Immt protein_coding protein_coding MGP_AJ_T0078079.1 MGP_AJ_G0030834.1 mouse_genomes_project 6 69551014 69599464 + MGP_AJ_P0078079 Immt protein_coding nonsense_mediated_decay MGP_AJ_T0078080.1 MGP_AJ_G0030834.1 mouse_genomes_project 6 69551041 69579192 + MGP_AJ_P0078080 Immt protein_coding protein_coding MGP_AJ_T0078081.1 MGP_AJ_G0030834.1 mouse_genomes_project 6 69585628 69589104 + Immt protein_coding retained_intron MGP_AJ_T0078082.1 MGP_AJ_G0030834.1 mouse_genomes_project 6 69592108 69595158 + Immt protein_coding retained_intron MGP_AJ_T0078083.1 MGP_AJ_G0030834.1 mouse_genomes_project 6 69593212 69597334 + Immt protein_coding retained_intron MGP_AJ_T0078084.1 MGP_AJ_G0030834.1 mouse_genomes_project 6 69593490 69599467 + MGP_AJ_P0078084 Immt protein_coding protein_coding MGP_AJ_T0078085.1 MGP_AJ_G0030834.1 mouse_genomes_project 6 69593576 69596612 + MGP_AJ_P0078085 Immt protein_coding protein_coding MGP_AJ_T0100113.1 MGP_AJ_G0038079.1 mouse_genomes_project 6 111132668 111132774 + Gm22591 snRNA snRNA MGP_AJ_T0077066.1 MGP_AJ_G0030556.1 mouse_genomes_project 6 34991857 35003654 - MGP_AJ_P0077066 Zc3hav1l protein_coding protein_coding MGP_AJ_T0077667.1 MGP_AJ_G0030722.1 mouse_genomes_project 6 49571620 49624837 + MGP_AJ_P0077667 Tax1bp1 protein_coding protein_coding MGP_AJ_T0077668.1 MGP_AJ_G0030722.1 mouse_genomes_project 6 49571641 49591096 + MGP_AJ_P0077668 Tax1bp1 protein_coding protein_coding MGP_AJ_T0077669.1 MGP_AJ_G0030722.1 mouse_genomes_project 6 49571654 49589418 + Tax1bp1 protein_coding retained_intron MGP_AJ_T0077670.1 MGP_AJ_G0030722.1 mouse_genomes_project 6 49572110 49591130 + MGP_AJ_P0077670 Tax1bp1 protein_coding protein_coding MGP_AJ_T0077671.1 MGP_AJ_G0030722.1 mouse_genomes_project 6 49572241 49585174 + MGP_AJ_P0077671 Tax1bp1 protein_coding protein_coding MGP_AJ_T0077672.1 MGP_AJ_G0030722.1 mouse_genomes_project 6 49598622 49600550 + Tax1bp1 protein_coding processed_transcript MGP_AJ_T0077673.1 MGP_AJ_G0030722.1 mouse_genomes_project 6 49615604 49620337 + Tax1bp1 protein_coding retained_intron MGP_AJ_T0000277.1 MGP_AJ_G0000221.1 mouse_genomes_project 6 65317647 65318051 + IG_V_pseudogene IG_V_pseudogene MGP_AJ_T0005049.1 MGP_AJ_G0004309.1 mouse_genomes_project 6 106587954 106594606 - Gm44040 antisense antisense MGP_AJ_T0076644.1 MGP_AJ_G0030484.1 mouse_genomes_project 6 25104011 25515727 + MGP_AJ_P0076644 Snd1 protein_coding protein_coding MGP_AJ_T0076645.1 MGP_AJ_G0030484.1 mouse_genomes_project 6 25104011 25504599 + MGP_AJ_P0076645 Snd1 protein_coding nonsense_mediated_decay MGP_AJ_T0076646.1 MGP_AJ_G0030484.1 mouse_genomes_project 6 25104022 25560142 + MGP_AJ_P0076646 Snd1 protein_coding protein_coding MGP_AJ_T0076647.1 MGP_AJ_G0030484.1 mouse_genomes_project 6 25104092 25106570 + Snd1 protein_coding retained_intron MGP_AJ_T0076648.1 MGP_AJ_G0030484.1 mouse_genomes_project 6 25104228 25423562 + MGP_AJ_P0076648 Snd1 protein_coding protein_coding MGP_AJ_T0076649.1 MGP_AJ_G0030484.1 mouse_genomes_project 6 25187311 25350731 + Snd1 protein_coding processed_transcript MGP_AJ_T0076651.1 MGP_AJ_G0030484.1 mouse_genomes_project 6 25330633 25332812 + Snd1 protein_coding processed_transcript MGP_AJ_T0076652.1 MGP_AJ_G0030484.1 mouse_genomes_project 6 25331444 25350741 + Snd1 protein_coding processed_transcript MGP_AJ_T0076653.1 MGP_AJ_G0030484.1 mouse_genomes_project 6 25391133 25501863 + Snd1 protein_coding processed_transcript MGP_AJ_T0076654.1 MGP_AJ_G0030484.1 mouse_genomes_project 6 25402958 25507109 + Snd1 protein_coding processed_transcript MGP_AJ_T0076656.1 MGP_AJ_G0030484.1 mouse_genomes_project 6 25475693 25507184 + Snd1 protein_coding processed_transcript MGP_AJ_T0076657.1 MGP_AJ_G0030484.1 mouse_genomes_project 6 25506918 25513422 + Snd1 protein_coding retained_intron MGP_AJ_T0081136.1 MGP_AJ_G0031472.1 mouse_genomes_project 6 146081522 146091222 - MGP_AJ_P0081136 Mansc4 protein_coding protein_coding MGP_AJ_T0081137.1 MGP_AJ_G0031472.1 mouse_genomes_project 6 146085064 146091191 - MGP_AJ_P0081137 Mansc4 protein_coding protein_coding MGP_AJ_T0076285.1 MGP_AJ_G0030407.1 mouse_genomes_project 6 2015403 2052299 - MGP_AJ_P0076285 Pon2 protein_coding protein_coding MGP_AJ_T0076286.1 MGP_AJ_G0030407.1 mouse_genomes_project 6 2021408 2052174 - Pon2 protein_coding retained_intron MGP_AJ_T0076287.1 MGP_AJ_G0030407.1 mouse_genomes_project 6 2024380 2040301 - Pon2 protein_coding processed_transcript MGP_AJ_T0076288.1 MGP_AJ_G0030407.1 mouse_genomes_project 6 2028777 2031615 - Pon2 protein_coding retained_intron MGP_AJ_T0000288.1 MGP_AJ_G0000232.1 mouse_genomes_project 6 65779634 65779933 - IG_V_pseudogene IG_V_pseudogene MGP_AJ_T0077492.1 MGP_AJ_G0030679.1 mouse_genomes_project 6 45510102 45545022 + MGP_AJ_P0077492 Gm28053 protein_coding protein_coding MGP_AJ_T0077494.1 MGP_AJ_G0030679.1 mouse_genomes_project 6 45510149 45521207 + Gm28053 protein_coding retained_intron MGP_AJ_T0077498.1 MGP_AJ_G0030679.1 mouse_genomes_project 6 45530514 45545066 + MGP_AJ_P0077498 Gm28053 protein_coding protein_coding MGP_AJ_T0002029.1 MGP_AJ_G0001942.1 mouse_genomes_project 6 77966475 77968519 + TEC TEC MGP_AJ_T0015395.1 MGP_AJ_G0013490.1 mouse_genomes_project 6 63056828 63058404 - processed_pseudogene processed_pseudogene MGP_AJ_T0000149.1 MGP_AJ_G0000114.1 mouse_genomes_project 6 65450487 65451213 + MGP_AJ_P0000149 Igkv2-112 IG_V_gene IG_V_gene MGP_AJ_T0000150.1 MGP_AJ_G0000114.1 mouse_genomes_project 6 65450487 65451213 + MGP_AJ_P0000150 Igkv2-112 IG_V_gene IG_V_gene MGP_AJ_T0080599.1 MGP_AJ_G0031347.1 mouse_genomes_project 6 130325669 130326759 - MGP_AJ_P0080599 Tas2r130 protein_coding protein_coding MGP_AJ_T0077232.1 MGP_AJ_G0030602.1 mouse_genomes_project 6 38283347 38286640 + MGP_AJ_P0077232 Prss2 protein_coding protein_coding MGP_AJ_T0002109.1 MGP_AJ_G0002022.1 mouse_genomes_project 6 101620130 101623722 + TEC TEC MGP_AJ_T0077112.1 MGP_AJ_G0030565.1 mouse_genomes_project 6 35592435 35672257 + MGP_AJ_P0077112 Tbxas1 protein_coding protein_coding MGP_AJ_T0077113.1 MGP_AJ_G0030565.1 mouse_genomes_project 6 35636512 35803791 + MGP_AJ_P0077113 Tbxas1 protein_coding protein_coding MGP_AJ_T0077114.1 MGP_AJ_G0030565.1 mouse_genomes_project 6 35636537 35748342 + Tbxas1 protein_coding retained_intron MGP_AJ_T0077115.1 MGP_AJ_G0030565.1 mouse_genomes_project 6 35636556 35803791 + Tbxas1 protein_coding retained_intron MGP_AJ_T0077116.1 MGP_AJ_G0030565.1 mouse_genomes_project 6 35660684 35720574 + MGP_AJ_P0077116 Tbxas1 protein_coding protein_coding MGP_AJ_T0077117.1 MGP_AJ_G0030565.1 mouse_genomes_project 6 35691098 35702761 + Tbxas1 protein_coding processed_transcript MGP_AJ_T0077118.1 MGP_AJ_G0030565.1 mouse_genomes_project 6 35702544 35792424 + Tbxas1 protein_coding retained_intron MGP_AJ_T0011642.1 MGP_AJ_G0009764.1 mouse_genomes_project 6 48997529 48997631 + Gm27868 misc_RNA misc_RNA MGP_AJ_T0015244.1 MGP_AJ_G0013339.1 mouse_genomes_project 6 5872298 5872611 + processed_pseudogene processed_pseudogene MGP_AJ_T0077943.1 MGP_AJ_G0030797.1 mouse_genomes_project 6 62196131 62223709 - MGP_AJ_P0077943 Hpgds protein_coding protein_coding MGP_AJ_T0077944.1 MGP_AJ_G0030797.1 mouse_genomes_project 6 62197875 62201766 - Hpgds protein_coding retained_intron MGP_AJ_T0077945.1 MGP_AJ_G0030797.1 mouse_genomes_project 6 62210807 62217099 - Hpgds protein_coding retained_intron MGP_AJ_T0076877.1 MGP_AJ_G0030520.1 mouse_genomes_project 6 27639886 27642944 - MGP_AJ_P0076877 Klf14 protein_coding protein_coding MGP_AJ_T0018273.1 MGP_AJ_G0015612.1 mouse_genomes_project 6 57378914 57494684 - processed_transcript lincRNA MGP_AJ_T0018274.1 MGP_AJ_G0015612.1 mouse_genomes_project 6 57487325 57494675 - processed_transcript lincRNA MGP_AJ_T0018275.1 MGP_AJ_G0015612.1 mouse_genomes_project 6 57488141 57494648 - processed_transcript lincRNA MGP_AJ_T0018276.1 MGP_AJ_G0015612.1 mouse_genomes_project 6 57488157 57494657 - processed_transcript lincRNA MGP_AJ_T0018277.1 MGP_AJ_G0015612.1 mouse_genomes_project 6 57492051 57494684 - processed_transcript retained_intron MGP_AJ_T0080967.1 MGP_AJ_G0031447.1 mouse_genomes_project 6 142032966 142121680 - MGP_AJ_P0080967 C2cd5 protein_coding protein_coding MGP_AJ_T0080968.1 MGP_AJ_G0031447.1 mouse_genomes_project 6 142032966 142121680 - MGP_AJ_P0080968 C2cd5 protein_coding protein_coding MGP_AJ_T0080969.1 MGP_AJ_G0031447.1 mouse_genomes_project 6 142032971 142121663 - MGP_AJ_P0080969 C2cd5 protein_coding nonsense_mediated_decay MGP_AJ_T0080970.1 MGP_AJ_G0031447.1 mouse_genomes_project 6 142032974 142121349 - MGP_AJ_P0080970 C2cd5 protein_coding protein_coding MGP_AJ_T0080971.1 MGP_AJ_G0031447.1 mouse_genomes_project 6 142033528 142121340 - MGP_AJ_P0080971 C2cd5 protein_coding protein_coding MGP_AJ_T0080972.1 MGP_AJ_G0031447.1 mouse_genomes_project 6 142033779 142121644 - MGP_AJ_P0080972 C2cd5 protein_coding protein_coding MGP_AJ_T0080973.1 MGP_AJ_G0031447.1 mouse_genomes_project 6 142033785 142036792 - C2cd5 protein_coding retained_intron MGP_AJ_T0080974.1 MGP_AJ_G0031447.1 mouse_genomes_project 6 142033983 142121578 - MGP_AJ_P0080974 C2cd5 protein_coding protein_coding MGP_AJ_T0080975.1 MGP_AJ_G0031447.1 mouse_genomes_project 6 142040132 142043125 - C2cd5 protein_coding retained_intron MGP_AJ_T0080976.1 MGP_AJ_G0031447.1 mouse_genomes_project 6 142048590 142121680 - C2cd5 protein_coding retained_intron MGP_AJ_T0080977.1 MGP_AJ_G0031447.1 mouse_genomes_project 6 142062695 142088678 - MGP_AJ_P0080977 C2cd5 protein_coding protein_coding MGP_AJ_T0080978.1 MGP_AJ_G0031447.1 mouse_genomes_project 6 142068662 142072007 - C2cd5 protein_coding retained_intron MGP_AJ_T0080979.1 MGP_AJ_G0031447.1 mouse_genomes_project 6 142092166 142121422 - C2cd5 protein_coding retained_intron MGP_AJ_T0080980.1 MGP_AJ_G0031447.1 mouse_genomes_project 6 142094239 142102990 - C2cd5 protein_coding processed_transcript MGP_AJ_T0080981.1 MGP_AJ_G0031447.1 mouse_genomes_project 6 142099567 142101547 - C2cd5 protein_coding retained_intron MGP_AJ_T0080982.1 MGP_AJ_G0031447.1 mouse_genomes_project 6 142099934 142121714 - MGP_AJ_P0080982 C2cd5 protein_coding protein_coding MGP_AJ_T0080983.1 MGP_AJ_G0031447.1 mouse_genomes_project 6 142104420 142121651 - C2cd5 protein_coding retained_intron MGP_AJ_T0080340.1 MGP_AJ_G0031273.1 mouse_genomes_project 6 125036107 125038969 - MGP_AJ_P0080340 Kcna5 protein_coding protein_coding MGP_AJ_T0008685.1 MGP_AJ_G0007016.1 mouse_genomes_project 6 88518381 88553926 + lincRNA lincRNA MGP_AJ_T0102719.1 MGP_AJ_G0040460.1 mouse_genomes_project 6 128332504 128340178 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0101385.1 MGP_AJ_G0039351.1 mouse_genomes_project 6 122695578 122695710 - Gm25311 snoRNA snoRNA MGP_AJ_T0000198.1 MGP_AJ_G0000149.1 mouse_genomes_project 6 67702713 67703380 - MGP_AJ_P0000198 Igkv6-20 IG_V_gene IG_V_gene MGP_AJ_T0004922.1 MGP_AJ_G0004225.1 mouse_genomes_project 6 29193514 29198018 + Plxna4os1 antisense antisense MGP_AJ_T0079373.1 MGP_AJ_G0031088.1 mouse_genomes_project 6 111443713 111454586 - MGP_AJ_P0079373 Tada3 protein_coding protein_coding MGP_AJ_T0079374.1 MGP_AJ_G0031088.1 mouse_genomes_project 6 111443726 111454636 - MGP_AJ_P0079374 Tada3 protein_coding protein_coding MGP_AJ_T0079375.1 MGP_AJ_G0031088.1 mouse_genomes_project 6 111443974 111448208 - Tada3 protein_coding retained_intron MGP_AJ_T0079376.1 MGP_AJ_G0031088.1 mouse_genomes_project 6 111451453 111454808 - Tada3 protein_coding retained_intron MGP_AJ_T0079377.1 MGP_AJ_G0031088.1 mouse_genomes_project 6 111451550 111454808 - Tada3 protein_coding retained_intron MGP_AJ_T0079378.1 MGP_AJ_G0031088.1 mouse_genomes_project 6 111453071 111454825 - MGP_AJ_P0079378 Tada3 protein_coding protein_coding MGP_AJ_T0077242.1 MGP_AJ_G0030606.1 mouse_genomes_project 6 38453708 38454995 + MGP_AJ_P0077242 1700034O15Rik protein_coding protein_coding MGP_AJ_T0015580.1 MGP_AJ_G0013675.1 mouse_genomes_project 6 121441918 121442069 + processed_pseudogene processed_pseudogene MGP_AJ_T0001910.1 MGP_AJ_G0001823.1 mouse_genomes_project 6 1505762 1507613 + TEC TEC MGP_AJ_T0004926.1 MGP_AJ_G0004229.1 mouse_genomes_project 6 31418625 31418860 - Npn2 antisense antisense MGP_AJ_T0004927.1 MGP_AJ_G0004229.1 mouse_genomes_project 6 31418784 31418859 - Npn2 antisense antisense MGP_AJ_T0080838.1 MGP_AJ_G0031419.1 mouse_genomes_project 6 138542733 138577899 + MGP_AJ_P0080838 protein_coding protein_coding MGP_AJ_T0080839.1 MGP_AJ_G0031419.1 mouse_genomes_project 6 138542749 138594230 + MGP_AJ_P0080839 protein_coding protein_coding MGP_AJ_T0080840.1 MGP_AJ_G0031419.1 mouse_genomes_project 6 138555022 138594337 + MGP_AJ_P0080840 protein_coding protein_coding MGP_AJ_T0080841.1 MGP_AJ_G0031419.1 mouse_genomes_project 6 138555025 138614650 + protein_coding processed_transcript MGP_AJ_T0080842.1 MGP_AJ_G0031419.1 mouse_genomes_project 6 138569537 138614650 + MGP_AJ_P0080842 protein_coding protein_coding MGP_AJ_T0080843.1 MGP_AJ_G0031419.1 mouse_genomes_project 6 138571738 138890654 + MGP_AJ_P0080843 protein_coding unknown_likely_coding MGP_AJ_T0080844.1 MGP_AJ_G0031419.1 mouse_genomes_project 6 138577299 138594003 + MGP_AJ_P0080844 protein_coding protein_coding MGP_AJ_T0080845.1 MGP_AJ_G0031419.1 mouse_genomes_project 6 138638077 138769625 + protein_coding processed_transcript MGP_AJ_T0080846.1 MGP_AJ_G0031419.1 mouse_genomes_project 6 138638077 138891995 + MGP_AJ_P0080846 protein_coding protein_coding MGP_AJ_T0080847.1 MGP_AJ_G0031419.1 mouse_genomes_project 6 138697516 138764582 + protein_coding retained_intron MGP_AJ_T0080848.1 MGP_AJ_G0031419.1 mouse_genomes_project 6 138759636 138891995 + protein_coding processed_transcript MGP_AJ_T0080849.1 MGP_AJ_G0031419.1 mouse_genomes_project 6 138759694 138779950 + protein_coding processed_transcript MGP_AJ_T0080850.1 MGP_AJ_G0031419.1 mouse_genomes_project 6 138759772 138821592 + protein_coding processed_transcript MGP_AJ_T0080852.1 MGP_AJ_G0031419.1 mouse_genomes_project 6 138761732 138891995 + MGP_AJ_P0080852 protein_coding protein_coding MGP_AJ_T0080853.1 MGP_AJ_G0031419.1 mouse_genomes_project 6 138842695 138864741 + protein_coding processed_transcript MGP_AJ_T0102042.1 MGP_AJ_G0039835.1 mouse_genomes_project 6 119899167 120263298 + transcribed_unprocessed_pseudogene processed_transcript MGP_AJ_T0077217.1 MGP_AJ_G0030590.1 mouse_genomes_project 6 37629632 37638333 - MGP_AJ_P0077217 Moxd2 protein_coding protein_coding MGP_AJ_T0080592.1 MGP_AJ_G0031345.1 mouse_genomes_project 6 130041845 130065501 - MGP_AJ_P0080592 Ybx3 protein_coding protein_coding MGP_AJ_T0080593.1 MGP_AJ_G0031345.1 mouse_genomes_project 6 130041845 130065463 - MGP_AJ_P0080593 Ybx3 protein_coding protein_coding MGP_AJ_T0080594.1 MGP_AJ_G0031345.1 mouse_genomes_project 6 130042080 130055289 - Ybx3 protein_coding processed_transcript MGP_AJ_T0080595.1 MGP_AJ_G0031345.1 mouse_genomes_project 6 130042090 130046015 - Ybx3 protein_coding retained_intron MGP_AJ_T0080596.1 MGP_AJ_G0031345.1 mouse_genomes_project 6 130053202 130055550 - Ybx3 protein_coding processed_transcript MGP_AJ_T0078461.1 MGP_AJ_G0030911.1 mouse_genomes_project 6 81610535 81636986 - MGP_AJ_P0078461 Paip2b protein_coding protein_coding MGP_AJ_T0078462.1 MGP_AJ_G0030911.1 mouse_genomes_project 6 81613917 81615457 - Paip2b protein_coding retained_intron MGP_AJ_T0078463.1 MGP_AJ_G0030911.1 mouse_genomes_project 6 81614970 81636958 - Paip2b protein_coding retained_intron MGP_AJ_T0078464.1 MGP_AJ_G0030911.1 mouse_genomes_project 6 81618112 81636958 - Paip2b protein_coding retained_intron MGP_AJ_T0078465.1 MGP_AJ_G0030911.1 mouse_genomes_project 6 81636701 81636945 - Paip2b protein_coding retained_intron MGP_AJ_T0077263.1 MGP_AJ_G0030616.1 mouse_genomes_project 6 38971307 38975814 + MGP_AJ_P0077263 Gstk1 protein_coding protein_coding MGP_AJ_T0077264.1 MGP_AJ_G0030616.1 mouse_genomes_project 6 38971351 38975814 + MGP_AJ_P0077264 Gstk1 protein_coding nonsense_mediated_decay MGP_AJ_T0077265.1 MGP_AJ_G0030616.1 mouse_genomes_project 6 38971361 38975820 + Gstk1 protein_coding retained_intron MGP_AJ_T0077266.1 MGP_AJ_G0030616.1 mouse_genomes_project 6 38971395 38975692 + Gstk1 protein_coding processed_transcript MGP_AJ_T0076289.1 MGP_AJ_G0030408.1 mouse_genomes_project 6 2133556 2190309 + MGP_AJ_P0076289 Asb4 protein_coding protein_coding MGP_AJ_T0076290.1 MGP_AJ_G0030408.1 mouse_genomes_project 6 2141153 2152960 + MGP_AJ_P0076290 Asb4 protein_coding protein_coding MGP_AJ_T0001922.1 MGP_AJ_G0001835.1 mouse_genomes_project 6 12456714 12458450 + TEC TEC MGP_AJ_T0102709.1 MGP_AJ_G0040451.1 mouse_genomes_project 6 114742386 114743094 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0079023.1 MGP_AJ_G0031021.1 mouse_genomes_project 6 89936298 89943370 + Ccdc174 protein_coding retained_intron MGP_AJ_T0079024.1 MGP_AJ_G0031021.1 mouse_genomes_project 6 89936298 89959275 + MGP_AJ_P0079024 Ccdc174 protein_coding protein_coding MGP_AJ_T0079025.1 MGP_AJ_G0031021.1 mouse_genomes_project 6 89936298 89959275 + MGP_AJ_P0079025 Ccdc174 protein_coding nonsense_mediated_decay MGP_AJ_T0079026.1 MGP_AJ_G0031021.1 mouse_genomes_project 6 89936317 89938895 + Ccdc174 protein_coding retained_intron MGP_AJ_T0079027.1 MGP_AJ_G0031021.1 mouse_genomes_project 6 89936320 89946729 + Ccdc174 protein_coding retained_intron MGP_AJ_T0079028.1 MGP_AJ_G0031021.1 mouse_genomes_project 6 89951446 89954514 + Ccdc174 protein_coding retained_intron MGP_AJ_T0079029.1 MGP_AJ_G0031021.1 mouse_genomes_project 6 89951903 89954661 + Ccdc174 protein_coding retained_intron MGP_AJ_T0077475.1 MGP_AJ_G0030674.1 mouse_genomes_project 6 45417217 45424142 + MGP_AJ_P0077475 AI854703 protein_coding protein_coding MGP_AJ_T0077476.1 MGP_AJ_G0030674.1 mouse_genomes_project 6 45417674 45419916 + MGP_AJ_P0077476 AI854703 protein_coding protein_coding MGP_AJ_T0077477.1 MGP_AJ_G0030674.1 mouse_genomes_project 6 45417732 45419916 + MGP_AJ_P0077477 AI854703 protein_coding protein_coding MGP_AJ_T0077478.1 MGP_AJ_G0030674.1 mouse_genomes_project 6 45418386 45424146 + MGP_AJ_P0077478 AI854703 protein_coding protein_coding MGP_AJ_T0101338.1 MGP_AJ_G0039304.1 mouse_genomes_project 6 45725976 45726106 + Gm24348 snoRNA snoRNA MGP_AJ_T0001989.1 MGP_AJ_G0001902.1 mouse_genomes_project 6 51559618 51560030 + TEC TEC MGP_AJ_T0101345.1 MGP_AJ_G0039311.1 mouse_genomes_project 6 53448752 53448884 - Gm22493 snoRNA snoRNA MGP_AJ_T0005106.1 MGP_AJ_G0004357.1 mouse_genomes_project 6 137378076 137383980 + A830011K09Rik antisense antisense MGP_AJ_T0005107.1 MGP_AJ_G0004357.1 mouse_genomes_project 6 137378171 137382689 + A830011K09Rik antisense antisense MGP_AJ_T0005108.1 MGP_AJ_G0004357.1 mouse_genomes_project 6 137378242 137384611 + A830011K09Rik antisense antisense MGP_AJ_T0101343.1 MGP_AJ_G0039309.1 mouse_genomes_project 6 51844614 51844743 + Gm24230 snoRNA snoRNA MGP_AJ_T0011672.1 MGP_AJ_G0009794.1 mouse_genomes_project 6 140693329 140693640 - Gm23069 misc_RNA misc_RNA MGP_AJ_T0018290.1 MGP_AJ_G0015617.1 mouse_genomes_project 6 70338450 70344554 + Gm20536 processed_transcript processed_transcript MGP_AJ_T0008703.1 MGP_AJ_G0007030.1 mouse_genomes_project 6 99621142 99638611 + Gm44169 lincRNA lincRNA MGP_AJ_T0015380.1 MGP_AJ_G0013475.1 mouse_genomes_project 6 61964328 61964998 - processed_pseudogene processed_pseudogene MGP_AJ_T0010741.1 MGP_AJ_G0008863.1 mouse_genomes_project 6 440996 441103 - Mir489 miRNA miRNA MGP_AJ_T0077267.1 MGP_AJ_G0030617.1 mouse_genomes_project 6 38987355 38993387 + MGP_AJ_P0077267 Tmem139 protein_coding protein_coding MGP_AJ_T0015376.1 MGP_AJ_G0013471.1 mouse_genomes_project 6 59886574 59887100 + processed_pseudogene processed_pseudogene MGP_AJ_T0015525.1 MGP_AJ_G0013620.1 mouse_genomes_project 6 105957465 105958077 + processed_pseudogene processed_pseudogene MGP_AJ_T0079544.1 MGP_AJ_G0031119.1 mouse_genomes_project 6 113671806 113681051 - MGP_AJ_P0079544 Mkrn2os protein_coding nonsense_mediated_decay MGP_AJ_T0079545.1 MGP_AJ_G0031119.1 mouse_genomes_project 6 113673384 113681078 - MGP_AJ_P0079545 Mkrn2os protein_coding protein_coding MGP_AJ_T0001921.1 MGP_AJ_G0001834.1 mouse_genomes_project 6 12268088 12270321 + TEC TEC MGP_AJ_T0076680.1 MGP_AJ_G0030491.1 mouse_genomes_project 6 25916596 25925077 + MGP_AJ_P0076680 Fam71f2 protein_coding protein_coding MGP_AJ_T0076681.1 MGP_AJ_G0030491.1 mouse_genomes_project 6 25918144 25929010 + MGP_AJ_P0076681 Fam71f2 protein_coding protein_coding MGP_AJ_T0076682.1 MGP_AJ_G0030491.1 mouse_genomes_project 6 25918146 25929005 + MGP_AJ_P0076682 Fam71f2 protein_coding nonsense_mediated_decay MGP_AJ_T0005078.1 MGP_AJ_G0004333.1 mouse_genomes_project 6 123402765 123412522 + A230083G16Rik antisense antisense MGP_AJ_T0101383.1 MGP_AJ_G0039349.1 mouse_genomes_project 6 122512291 122512410 + Gm22916 snoRNA snoRNA MGP_AJ_T0002679.1 MGP_AJ_G0002560.1 mouse_genomes_project 6 37917704 37918199 + MGP_AJ_P0002679 Trbv17 TR_V_gene TR_V_gene MGP_AJ_T0008610.1 MGP_AJ_G0006958.1 mouse_genomes_project 6 48937105 48946612 + Halr1 lincRNA lincRNA MGP_AJ_T0008611.1 MGP_AJ_G0006958.1 mouse_genomes_project 6 48937150 48947778 + Halr1 lincRNA lincRNA MGP_AJ_T0008612.1 MGP_AJ_G0006958.1 mouse_genomes_project 6 48937159 48946273 + Halr1 lincRNA lincRNA MGP_AJ_T0101394.1 MGP_AJ_G0039360.1 mouse_genomes_project 6 144406653 144406740 + Gm23498 snoRNA snoRNA MGP_AJ_T0102674.1 MGP_AJ_G0040416.1 mouse_genomes_project 6 39455816 39456164 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0015354.1 MGP_AJ_G0013449.1 mouse_genomes_project 6 50032759 50033945 - processed_pseudogene processed_pseudogene MGP_AJ_T0000143.1 MGP_AJ_G0000108.1 mouse_genomes_project 6 65135768 65136055 - MGP_AJ_P0000143 IG_V_gene IG_V_gene MGP_AJ_T0015614.1 MGP_AJ_G0013709.1 mouse_genomes_project 6 128126932 128127374 - processed_pseudogene processed_pseudogene MGP_AJ_T0080572.1 MGP_AJ_G0031338.1 mouse_genomes_project 6 128849719 128864475 - MGP_AJ_P0080572 protein_coding protein_coding MGP_AJ_T0080575.1 MGP_AJ_G0031338.1 mouse_genomes_project 6 128849797 128864475 - MGP_AJ_P0080575 protein_coding protein_coding MGP_AJ_T0101328.1 MGP_AJ_G0039294.1 mouse_genomes_project 6 21704741 21704873 - Gm24443 snoRNA snoRNA MGP_AJ_T0004928.1 MGP_AJ_G0004230.1 mouse_genomes_project 6 31419174 31427338 - Gm14547 antisense antisense MGP_AJ_T0079030.1 MGP_AJ_G0031022.1 mouse_genomes_project 6 89962240 89964144 + 4930590J08Rik protein_coding retained_intron MGP_AJ_T0079031.1 MGP_AJ_G0031022.1 mouse_genomes_project 6 89963664 90010943 + MGP_AJ_P0079031 4930590J08Rik protein_coding protein_coding MGP_AJ_T0079032.1 MGP_AJ_G0031022.1 mouse_genomes_project 6 89974876 90010858 + MGP_AJ_P0079032 4930590J08Rik protein_coding protein_coding MGP_AJ_T0079033.1 MGP_AJ_G0031022.1 mouse_genomes_project 6 90004481 90010248 + MGP_AJ_P0079033 4930590J08Rik protein_coding protein_coding MGP_AJ_T0102675.1 MGP_AJ_G0040417.1 mouse_genomes_project 6 39479052 39479116 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0015266.1 MGP_AJ_G0013361.1 mouse_genomes_project 6 15778901 15780210 + processed_pseudogene processed_pseudogene MGP_AJ_T0080032.1 MGP_AJ_G0031215.1 mouse_genomes_project 6 121701260 121737146 - MGP_AJ_P0080032 protein_coding protein_coding MGP_AJ_T0015423.1 MGP_AJ_G0013518.1 mouse_genomes_project 6 65529846 65530574 + processed_pseudogene processed_pseudogene MGP_AJ_T0002043.1 MGP_AJ_G0001956.1 mouse_genomes_project 6 83504998 83507299 + TEC TEC MGP_AJ_T0008552.1 MGP_AJ_G0006919.1 mouse_genomes_project 6 28055055 28066036 + Gm13844 lincRNA lincRNA MGP_AJ_T0008545.1 MGP_AJ_G0006915.1 mouse_genomes_project 6 27774899 27899111 - Lncpint lincRNA lincRNA MGP_AJ_T0008547.1 MGP_AJ_G0006915.1 mouse_genomes_project 6 27846285 27899070 - Lncpint lincRNA lincRNA MGP_AJ_T0008548.1 MGP_AJ_G0006915.1 mouse_genomes_project 6 27847238 27899057 - Lncpint lincRNA lincRNA MGP_AJ_T0008549.1 MGP_AJ_G0006915.1 mouse_genomes_project 6 27847286 27898983 - Lncpint lincRNA lincRNA MGP_AJ_T0005002.1 MGP_AJ_G0004282.1 mouse_genomes_project 6 83853234 83893985 + Gm19265 antisense antisense MGP_AJ_T0008634.1 MGP_AJ_G0006976.1 mouse_genomes_project 6 66738687 66738925 - Rprl1 lincRNA lincRNA MGP_AJ_T0100107.1 MGP_AJ_G0038073.1 mouse_genomes_project 6 101688464 101688526 + Gm24784 snRNA snRNA MGP_AJ_T0080628.1 MGP_AJ_G0031375.1 mouse_genomes_project 6 131824048 131826726 + MGP_AJ_P0080628 Smim10l1 protein_coding protein_coding MGP_AJ_T0080629.1 MGP_AJ_G0031375.1 mouse_genomes_project 6 131824404 131832324 + MGP_AJ_P0080629 Smim10l1 protein_coding protein_coding MGP_AJ_T0080630.1 MGP_AJ_G0031375.1 mouse_genomes_project 6 131824438 131832326 + MGP_AJ_P0080630 Smim10l1 protein_coding nonsense_mediated_decay MGP_AJ_T0077781.1 MGP_AJ_G0030747.1 mouse_genomes_project 6 52930159 53215427 - MGP_AJ_P0077781 Pde1c protein_coding protein_coding MGP_AJ_T0077782.1 MGP_AJ_G0030747.1 mouse_genomes_project 6 52932042 53416821 - MGP_AJ_P0077782 Pde1c protein_coding protein_coding MGP_AJ_T0077783.1 MGP_AJ_G0030747.1 mouse_genomes_project 6 52932652 53214890 - Pde1c protein_coding processed_transcript MGP_AJ_T0077784.1 MGP_AJ_G0030747.1 mouse_genomes_project 6 52938100 53215554 - MGP_AJ_P0077784 Pde1c protein_coding protein_coding MGP_AJ_T0077785.1 MGP_AJ_G0030747.1 mouse_genomes_project 6 52942180 53222592 - MGP_AJ_P0077785 Pde1c protein_coding protein_coding MGP_AJ_T0077786.1 MGP_AJ_G0030747.1 mouse_genomes_project 6 52942295 52983487 - MGP_AJ_P0077786 Pde1c protein_coding nonsense_mediated_decay MGP_AJ_T0077787.1 MGP_AJ_G0030747.1 mouse_genomes_project 6 52942348 53222611 - MGP_AJ_P0077787 Pde1c protein_coding protein_coding MGP_AJ_T0077788.1 MGP_AJ_G0030747.1 mouse_genomes_project 6 52960923 53215346 - MGP_AJ_P0077788 Pde1c protein_coding protein_coding MGP_AJ_T0077789.1 MGP_AJ_G0030747.1 mouse_genomes_project 6 52964485 53222640 - MGP_AJ_P0077789 Pde1c protein_coding protein_coding MGP_AJ_T0077790.1 MGP_AJ_G0030747.1 mouse_genomes_project 6 52966195 53215819 - MGP_AJ_P0077790 Pde1c protein_coding protein_coding MGP_AJ_T0077791.1 MGP_AJ_G0030747.1 mouse_genomes_project 6 52966649 53215401 - MGP_AJ_P0077791 Pde1c protein_coding protein_coding MGP_AJ_T0077792.1 MGP_AJ_G0030747.1 mouse_genomes_project 6 53041494 53215409 - Pde1c protein_coding retained_intron MGP_AJ_T0077793.1 MGP_AJ_G0030747.1 mouse_genomes_project 6 53194837 53215348 - Pde1c protein_coding retained_intron MGP_AJ_T0077794.1 MGP_AJ_G0030747.1 mouse_genomes_project 6 53198054 53222613 - Pde1c protein_coding retained_intron MGP_AJ_T0077204.1 MGP_AJ_G0030586.1 mouse_genomes_project 6 37311370 37312431 + MGP_AJ_P0077204 Olfr460 protein_coding protein_coding MGP_AJ_T0015446.1 MGP_AJ_G0013541.1 mouse_genomes_project 6 73794881 73796154 + processed_pseudogene processed_pseudogene MGP_AJ_T0080543.1 MGP_AJ_G0031325.1 mouse_genomes_project 6 128186611 128200207 - MGP_AJ_P0080543 Klrk1 protein_coding protein_coding MGP_AJ_T0080544.1 MGP_AJ_G0031325.1 mouse_genomes_project 6 128188699 128199113 - MGP_AJ_P0080544 Klrk1 protein_coding protein_coding MGP_AJ_T0080545.1 MGP_AJ_G0031325.1 mouse_genomes_project 6 128188745 128200184 - MGP_AJ_P0080545 Klrk1 protein_coding protein_coding MGP_AJ_T0080546.1 MGP_AJ_G0031325.1 mouse_genomes_project 6 128192816 128198922 - Klrk1 protein_coding retained_intron MGP_AJ_T0080547.1 MGP_AJ_G0031325.1 mouse_genomes_project 6 128192891 128199025 - Klrk1 protein_coding retained_intron MGP_AJ_T0080548.1 MGP_AJ_G0031325.1 mouse_genomes_project 6 128196942 128200203 - Klrk1 protein_coding retained_intron MGP_AJ_T0102679.1 MGP_AJ_G0040421.1 mouse_genomes_project 6 39900285 39900592 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0079255.1 MGP_AJ_G0031069.1 mouse_genomes_project 6 106285192 106619910 + MGP_AJ_P0079255 Itpr1 protein_coding protein_coding MGP_AJ_T0079256.1 MGP_AJ_G0031069.1 mouse_genomes_project 6 106285196 106619918 + MGP_AJ_P0079256 Itpr1 protein_coding unknown_likely_coding MGP_AJ_T0079257.1 MGP_AJ_G0031069.1 mouse_genomes_project 6 106285298 106619910 + MGP_AJ_P0079257 Itpr1 protein_coding protein_coding MGP_AJ_T0079258.1 MGP_AJ_G0031069.1 mouse_genomes_project 6 106325520 106463754 + Itpr1 protein_coding retained_intron MGP_AJ_T0079259.1 MGP_AJ_G0031069.1 mouse_genomes_project 6 106421992 106443413 + MGP_AJ_P0079259 Itpr1 protein_coding protein_coding MGP_AJ_T0079260.1 MGP_AJ_G0031069.1 mouse_genomes_project 6 106485997 106489751 + Itpr1 protein_coding retained_intron MGP_AJ_T0079261.1 MGP_AJ_G0031069.1 mouse_genomes_project 6 106487545 106511318 + MGP_AJ_P0079261 Itpr1 protein_coding protein_coding MGP_AJ_T0079262.1 MGP_AJ_G0031069.1 mouse_genomes_project 6 106487612 106544380 + MGP_AJ_P0079262 Itpr1 protein_coding protein_coding MGP_AJ_T0079263.1 MGP_AJ_G0031069.1 mouse_genomes_project 6 106488626 106511273 + MGP_AJ_P0079263 Itpr1 protein_coding protein_coding MGP_AJ_T0079264.1 MGP_AJ_G0031069.1 mouse_genomes_project 6 106529332 106541863 + Itpr1 protein_coding processed_transcript MGP_AJ_T0079265.1 MGP_AJ_G0031069.1 mouse_genomes_project 6 106577261 106581855 + Itpr1 protein_coding retained_intron MGP_AJ_T0079266.1 MGP_AJ_G0031069.1 mouse_genomes_project 6 106587657 106588599 + Itpr1 protein_coding retained_intron MGP_AJ_T0004908.1 MGP_AJ_G0004213.1 mouse_genomes_project 6 14489987 14490588 - Gm26738 antisense antisense MGP_AJ_T0002099.1 MGP_AJ_G0002012.1 mouse_genomes_project 6 98772148 98773673 - TEC TEC MGP_AJ_T0008724.1 MGP_AJ_G0007047.1 mouse_genomes_project 6 115675383 115701912 - Gm45083 lincRNA lincRNA MGP_AJ_T0008525.1 MGP_AJ_G0006901.1 mouse_genomes_project 6 13703153 13709344 - Gm15473 lincRNA lincRNA MGP_AJ_T0101390.1 MGP_AJ_G0039356.1 mouse_genomes_project 6 133982263 133982397 + Gm22881 snoRNA snoRNA MGP_AJ_T0077777.1 MGP_AJ_G0030744.1 mouse_genomes_project 6 52533596 52537038 - MGP_AJ_P0077777 Neurod6 protein_coding protein_coding MGP_AJ_T0002094.1 MGP_AJ_G0002007.1 mouse_genomes_project 6 95669924 95671597 - TEC TEC MGP_AJ_T0078012.1 MGP_AJ_G0030818.1 mouse_genomes_project 6 68468912 68494941 - MGP_AJ_P0078012 Rpia protein_coding protein_coding MGP_AJ_T0078013.1 MGP_AJ_G0030818.1 mouse_genomes_project 6 68469465 68476745 - Rpia protein_coding retained_intron MGP_AJ_T0078014.1 MGP_AJ_G0030818.1 mouse_genomes_project 6 68484925 68494712 - Rpia protein_coding retained_intron MGP_AJ_T0015450.1 MGP_AJ_G0013545.1 mouse_genomes_project 6 76227285 76228257 + processed_pseudogene processed_pseudogene MGP_AJ_T0079644.1 MGP_AJ_G0031137.1 mouse_genomes_project 6 114511166 114565530 - MGP_AJ_P0079644 Alox5 protein_coding protein_coding MGP_AJ_T0079645.1 MGP_AJ_G0031137.1 mouse_genomes_project 6 114511363 114565483 - Alox5 protein_coding retained_intron MGP_AJ_T0079646.1 MGP_AJ_G0031137.1 mouse_genomes_project 6 114511365 114513880 - Alox5 protein_coding retained_intron MGP_AJ_T0079647.1 MGP_AJ_G0031137.1 mouse_genomes_project 6 114511696 114565376 - MGP_AJ_P0079647 Alox5 protein_coding nonsense_mediated_decay MGP_AJ_T0079648.1 MGP_AJ_G0031137.1 mouse_genomes_project 6 114511808 114565376 - MGP_AJ_P0079648 Alox5 protein_coding protein_coding MGP_AJ_T0079649.1 MGP_AJ_G0031137.1 mouse_genomes_project 6 114511808 114565376 - MGP_AJ_P0079649 Alox5 protein_coding protein_coding MGP_AJ_T0079650.1 MGP_AJ_G0031137.1 mouse_genomes_project 6 114513678 114515108 - Alox5 protein_coding retained_intron MGP_AJ_T0079651.1 MGP_AJ_G0031137.1 mouse_genomes_project 6 114516557 114528980 - Alox5 protein_coding processed_transcript MGP_AJ_T0010783.1 MGP_AJ_G0008905.1 mouse_genomes_project 6 85910191 85910319 - miRNA miRNA MGP_AJ_T0102669.1 MGP_AJ_G0040411.1 mouse_genomes_project 6 38166606 38166959 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0080684.1 MGP_AJ_G0031388.1 mouse_genomes_project 6 133843942 133856049 + MGP_AJ_P0080684 Ddx47 protein_coding protein_coding MGP_AJ_T0080685.1 MGP_AJ_G0031388.1 mouse_genomes_project 6 133843952 133851367 + MGP_AJ_P0080685 Ddx47 protein_coding protein_coding MGP_AJ_T0080686.1 MGP_AJ_G0031388.1 mouse_genomes_project 6 133843954 133851331 + MGP_AJ_P0080686 Ddx47 protein_coding protein_coding MGP_AJ_T0080687.1 MGP_AJ_G0031388.1 mouse_genomes_project 6 133843956 133848959 + Ddx47 protein_coding retained_intron MGP_AJ_T0080688.1 MGP_AJ_G0031388.1 mouse_genomes_project 6 133843962 133856045 + Ddx47 protein_coding retained_intron MGP_AJ_T0080689.1 MGP_AJ_G0031388.1 mouse_genomes_project 6 133843963 133850446 + MGP_AJ_P0080689 Ddx47 protein_coding protein_coding MGP_AJ_T0080690.1 MGP_AJ_G0031388.1 mouse_genomes_project 6 133843965 133847956 + Ddx47 protein_coding retained_intron MGP_AJ_T0080691.1 MGP_AJ_G0031388.1 mouse_genomes_project 6 133843974 133853896 + MGP_AJ_P0080691 Ddx47 protein_coding protein_coding MGP_AJ_T0080692.1 MGP_AJ_G0031388.1 mouse_genomes_project 6 133843983 133853919 + MGP_AJ_P0080692 Ddx47 protein_coding protein_coding MGP_AJ_T0080693.1 MGP_AJ_G0031388.1 mouse_genomes_project 6 133847680 133851396 + Ddx47 protein_coding processed_transcript MGP_AJ_T0080694.1 MGP_AJ_G0031388.1 mouse_genomes_project 6 133848151 133850864 + Ddx47 protein_coding retained_intron MGP_AJ_T0080695.1 MGP_AJ_G0031388.1 mouse_genomes_project 6 133851329 133856045 + MGP_AJ_P0080695 Ddx47 protein_coding protein_coding MGP_AJ_T0015231.1 MGP_AJ_G0013326.1 mouse_genomes_project 6 1569122 1569294 + processed_pseudogene processed_pseudogene MGP_AJ_T0079863.1 MGP_AJ_G0031176.1 mouse_genomes_project 6 118823239 118881825 + Cecr2 protein_coding retained_intron MGP_AJ_T0079864.1 MGP_AJ_G0031176.1 mouse_genomes_project 6 118823291 118929635 + MGP_AJ_P0079864 Cecr2 protein_coding protein_coding MGP_AJ_T0079865.1 MGP_AJ_G0031176.1 mouse_genomes_project 6 118823405 118881653 + Cecr2 protein_coding processed_transcript MGP_AJ_T0079866.1 MGP_AJ_G0031176.1 mouse_genomes_project 6 118823452 118925351 + MGP_AJ_P0079866 Cecr2 protein_coding protein_coding MGP_AJ_T0079867.1 MGP_AJ_G0031176.1 mouse_genomes_project 6 118891449 118915136 + Cecr2 protein_coding processed_transcript MGP_AJ_T0079868.1 MGP_AJ_G0031176.1 mouse_genomes_project 6 118891516 118914011 + MGP_AJ_P0079868 Cecr2 protein_coding protein_coding MGP_AJ_T0079869.1 MGP_AJ_G0031176.1 mouse_genomes_project 6 118892646 118897643 + Cecr2 protein_coding retained_intron MGP_AJ_T0079870.1 MGP_AJ_G0031176.1 mouse_genomes_project 6 118916595 118920169 + MGP_AJ_P0079870 Cecr2 protein_coding protein_coding MGP_AJ_T0101349.1 MGP_AJ_G0039315.1 mouse_genomes_project 6 57164921 57165050 - Gm22723 snoRNA snoRNA MGP_AJ_T0078130.1 MGP_AJ_G0030843.1 mouse_genomes_project 6 70081794 70084194 - Rnf181 protein_coding retained_intron MGP_AJ_T0078131.1 MGP_AJ_G0030843.1 mouse_genomes_project 6 70081794 70084503 - MGP_AJ_P0078131 Rnf181 protein_coding protein_coding MGP_AJ_T0078132.1 MGP_AJ_G0030843.1 mouse_genomes_project 6 70081794 70084464 - MGP_AJ_P0078132 Rnf181 protein_coding protein_coding MGP_AJ_T0078133.1 MGP_AJ_G0030843.1 mouse_genomes_project 6 70081952 70084431 - MGP_AJ_P0078133 Rnf181 protein_coding nonsense_mediated_decay MGP_AJ_T0078134.1 MGP_AJ_G0030843.1 mouse_genomes_project 6 70082164 70083467 - MGP_AJ_P0078134 Rnf181 protein_coding protein_coding MGP_AJ_T0078135.1 MGP_AJ_G0030843.1 mouse_genomes_project 6 70082325 70089027 - MGP_AJ_P0078135 Rnf181 protein_coding protein_coding MGP_AJ_T0078136.1 MGP_AJ_G0030843.1 mouse_genomes_project 6 70082331 70084415 - MGP_AJ_P0078136 Rnf181 protein_coding nonsense_mediated_decay MGP_AJ_T0078137.1 MGP_AJ_G0030843.1 mouse_genomes_project 6 70082357 70084461 - MGP_AJ_P0078137 Rnf181 protein_coding nonsense_mediated_decay MGP_AJ_T0078138.1 MGP_AJ_G0030843.1 mouse_genomes_project 6 70082358 70084434 - MGP_AJ_P0078138 Rnf181 protein_coding nonsense_mediated_decay MGP_AJ_T0078139.1 MGP_AJ_G0030843.1 mouse_genomes_project 6 70082368 70084453 - MGP_AJ_P0078139 Rnf181 protein_coding protein_coding MGP_AJ_T0078140.1 MGP_AJ_G0030843.1 mouse_genomes_project 6 70082416 70084436 - MGP_AJ_P0078140 Rnf181 protein_coding nonsense_mediated_decay MGP_AJ_T0078141.1 MGP_AJ_G0030843.1 mouse_genomes_project 6 70082498 70083138 - Rnf181 protein_coding retained_intron MGP_AJ_T0078142.1 MGP_AJ_G0030843.1 mouse_genomes_project 6 70082693 70084499 - Rnf181 protein_coding retained_intron MGP_AJ_T0078143.1 MGP_AJ_G0030843.1 mouse_genomes_project 6 70083093 70084066 - Rnf181 protein_coding retained_intron MGP_AJ_T0008628.1 MGP_AJ_G0006971.1 mouse_genomes_project 6 57669719 57674137 + Gm35386 lincRNA lincRNA MGP_AJ_T0076201.1 MGP_AJ_G0030392.1 mouse_genomes_project 6 78518 83543 - MGP_AJ_P0076201 Samd9l protein_coding protein_coding MGP_AJ_T0076202.1 MGP_AJ_G0030392.1 mouse_genomes_project 6 83211 94044 - MGP_AJ_P0076202 Samd9l protein_coding protein_coding MGP_AJ_T0077643.1 MGP_AJ_G0030716.1 mouse_genomes_project 6 49058935 49063205 - MGP_AJ_P0077643 Hoxa9 protein_coding protein_coding MGP_AJ_T0077644.1 MGP_AJ_G0030716.1 mouse_genomes_project 6 49059798 49066921 - Hoxa9 protein_coding processed_transcript MGP_AJ_T0077645.1 MGP_AJ_G0030716.1 mouse_genomes_project 6 49059956 49062024 - MGP_AJ_P0077645 Hoxa9 protein_coding protein_coding MGP_AJ_T0077646.1 MGP_AJ_G0030716.1 mouse_genomes_project 6 49060158 49066114 - Hoxa9 protein_coding processed_transcript MGP_AJ_T0077647.1 MGP_AJ_G0030716.1 mouse_genomes_project 6 49064081 49066365 - Hoxa9 protein_coding retained_intron MGP_AJ_T0080477.1 MGP_AJ_G0031306.1 mouse_genomes_project 6 127394225 127408976 - MGP_AJ_P0080477 protein_coding protein_coding MGP_AJ_T0080478.1 MGP_AJ_G0031306.1 mouse_genomes_project 6 127394894 127408958 - MGP_AJ_P0080478 protein_coding protein_coding MGP_AJ_T0080479.1 MGP_AJ_G0031306.1 mouse_genomes_project 6 127395413 127408935 - MGP_AJ_P0080479 protein_coding protein_coding MGP_AJ_T0080480.1 MGP_AJ_G0031306.1 mouse_genomes_project 6 127401408 127408950 - MGP_AJ_P0080480 protein_coding protein_coding MGP_AJ_T0015288.1 MGP_AJ_G0013383.1 mouse_genomes_project 6 26622388 26622595 + processed_pseudogene processed_pseudogene MGP_AJ_T0008542.1 MGP_AJ_G0006912.1 mouse_genomes_project 6 27584157 27626971 + 4930412F09Rik lincRNA lincRNA MGP_AJ_T0079196.1 MGP_AJ_G0031056.1 mouse_genomes_project 6 98816405 98919527 + MGP_AJ_P0079196 Gxylt2 protein_coding protein_coding MGP_AJ_T0079197.1 MGP_AJ_G0031056.1 mouse_genomes_project 6 98816426 98819346 + Gxylt2 protein_coding processed_transcript MGP_AJ_T0008740.1 MGP_AJ_G0007063.1 mouse_genomes_project 6 125820053 125831609 - Gm38404 lincRNA lincRNA MGP_AJ_T0008594.1 MGP_AJ_G0006946.1 mouse_genomes_project 6 45589978 45590525 - Gm44019 lincRNA lincRNA MGP_AJ_T0015243.1 MGP_AJ_G0013338.1 mouse_genomes_project 6 5349485 5350732 - processed_pseudogene processed_pseudogene MGP_AJ_T0077067.1 MGP_AJ_G0030557.1 mouse_genomes_project 6 35009668 35059999 - MGP_AJ_P0077067 Zc3hav1 protein_coding protein_coding MGP_AJ_T0077068.1 MGP_AJ_G0030557.1 mouse_genomes_project 6 35014980 35059999 - MGP_AJ_P0077068 Zc3hav1 protein_coding protein_coding MGP_AJ_T0077069.1 MGP_AJ_G0030557.1 mouse_genomes_project 6 35020061 35060329 - MGP_AJ_P0077069 Zc3hav1 protein_coding protein_coding MGP_AJ_T0077070.1 MGP_AJ_G0030557.1 mouse_genomes_project 6 35020061 35060329 - MGP_AJ_P0077070 Zc3hav1 protein_coding protein_coding MGP_AJ_T0079078.1 MGP_AJ_G0031033.1 mouse_genomes_project 6 92608069 92713629 + MGP_AJ_P0079078 Slc25a26 protein_coding protein_coding MGP_AJ_T0079079.1 MGP_AJ_G0031033.1 mouse_genomes_project 6 92608071 92713012 + MGP_AJ_P0079079 Slc25a26 protein_coding nonsense_mediated_decay MGP_AJ_T0079080.1 MGP_AJ_G0031033.1 mouse_genomes_project 6 92608107 92713629 + MGP_AJ_P0079080 Slc25a26 protein_coding nonsense_mediated_decay MGP_AJ_T0079081.1 MGP_AJ_G0031033.1 mouse_genomes_project 6 92608287 92618568 + Slc25a26 protein_coding processed_transcript MGP_AJ_T0079082.1 MGP_AJ_G0031033.1 mouse_genomes_project 6 92615281 92703569 + MGP_AJ_P0079082 Slc25a26 protein_coding nonsense_mediated_decay MGP_AJ_T0079083.1 MGP_AJ_G0031033.1 mouse_genomes_project 6 92641950 92712820 + Slc25a26 protein_coding processed_transcript MGP_AJ_T0079084.1 MGP_AJ_G0031033.1 mouse_genomes_project 6 92685965 92712540 + Slc25a26 protein_coding processed_transcript MGP_AJ_T0002582.1 MGP_AJ_G0002482.1 mouse_genomes_project 6 38305119 38305167 + TR_J_pseudogene TR_J_pseudogene MGP_AJ_T0000282.1 MGP_AJ_G0000226.1 mouse_genomes_project 6 65604624 65605279 + IG_V_pseudogene IG_V_pseudogene MGP_AJ_T0078038.1 MGP_AJ_G0030826.1 mouse_genomes_project 6 69031963 69048274 + MGP_AJ_P0078038 Cd8b1 protein_coding protein_coding MGP_AJ_T0000053.1 MGP_AJ_G0000042.1 mouse_genomes_project 6 68428771 68428809 + MGP_AJ_P0000053 Igkj4 IG_J_gene IG_J_gene MGP_AJ_T0100106.1 MGP_AJ_G0038072.1 mouse_genomes_project 6 100964327 100964435 + Gm26022 snRNA snRNA MGP_AJ_T0080015.1 MGP_AJ_G0031211.1 mouse_genomes_project 6 121550134 121562518 + MGP_AJ_P0080015 Clec4n protein_coding protein_coding MGP_AJ_T0080016.1 MGP_AJ_G0031211.1 mouse_genomes_project 6 121550145 121562516 + MGP_AJ_P0080016 Clec4n protein_coding protein_coding MGP_AJ_T0080017.1 MGP_AJ_G0031211.1 mouse_genomes_project 6 121550148 121551121 + Clec4n protein_coding processed_transcript MGP_AJ_T0080018.1 MGP_AJ_G0031211.1 mouse_genomes_project 6 121550148 121562516 + MGP_AJ_P0080018 Clec4n protein_coding nonsense_mediated_decay MGP_AJ_T0080019.1 MGP_AJ_G0031211.1 mouse_genomes_project 6 121550148 121562516 + MGP_AJ_P0080019 Clec4n protein_coding protein_coding MGP_AJ_T0080020.1 MGP_AJ_G0031211.1 mouse_genomes_project 6 121550309 121562082 + MGP_AJ_P0080020 Clec4n protein_coding protein_coding MGP_AJ_T0078428.1 MGP_AJ_G0030903.1 mouse_genomes_project 6 81340240 81369959 - Stambp protein_coding retained_intron MGP_AJ_T0078429.1 MGP_AJ_G0030903.1 mouse_genomes_project 6 81340246 81369965 - MGP_AJ_P0078429 Stambp protein_coding protein_coding MGP_AJ_T0078430.1 MGP_AJ_G0030903.1 mouse_genomes_project 6 81340253 81370282 - MGP_AJ_P0078430 Stambp protein_coding protein_coding MGP_AJ_T0078431.1 MGP_AJ_G0030903.1 mouse_genomes_project 6 81340383 81349533 - Stambp protein_coding retained_intron MGP_AJ_T0078432.1 MGP_AJ_G0030903.1 mouse_genomes_project 6 81340788 81369949 - MGP_AJ_P0078432 Stambp protein_coding protein_coding MGP_AJ_T0078433.1 MGP_AJ_G0030903.1 mouse_genomes_project 6 81348957 81349361 - Stambp protein_coding retained_intron MGP_AJ_T0078434.1 MGP_AJ_G0030903.1 mouse_genomes_project 6 81368664 81369971 - Stambp protein_coding retained_intron MGP_AJ_T0077076.1 MGP_AJ_G0030559.1 mouse_genomes_project 6 35144974 35224738 + MGP_AJ_P0077076 Ubn2 protein_coding protein_coding MGP_AJ_T0077077.1 MGP_AJ_G0030559.1 mouse_genomes_project 6 35145197 35217165 + MGP_AJ_P0077077 Ubn2 protein_coding unknown_likely_coding MGP_AJ_T0077078.1 MGP_AJ_G0030559.1 mouse_genomes_project 6 35145197 35214554 + MGP_AJ_P0077078 Ubn2 protein_coding protein_coding MGP_AJ_T0077079.1 MGP_AJ_G0030559.1 mouse_genomes_project 6 35151526 35236895 + MGP_AJ_P0077079 Ubn2 protein_coding protein_coding MGP_AJ_T0077080.1 MGP_AJ_G0030559.1 mouse_genomes_project 6 35173745 35174525 + Ubn2 protein_coding retained_intron MGP_AJ_T0077081.1 MGP_AJ_G0030559.1 mouse_genomes_project 6 35174683 35195811 + Ubn2 protein_coding retained_intron MGP_AJ_T0077082.1 MGP_AJ_G0030559.1 mouse_genomes_project 6 35194103 35198414 + Ubn2 protein_coding retained_intron MGP_AJ_T0077083.1 MGP_AJ_G0030559.1 mouse_genomes_project 6 35194201 35199298 + Ubn2 protein_coding processed_transcript MGP_AJ_T0077084.1 MGP_AJ_G0030559.1 mouse_genomes_project 6 35195049 35214554 + Ubn2 protein_coding retained_intron MGP_AJ_T0077085.1 MGP_AJ_G0030559.1 mouse_genomes_project 6 35202989 35236929 + MGP_AJ_P0077085 Ubn2 protein_coding protein_coding MGP_AJ_T0002565.1 MGP_AJ_G0002466.1 mouse_genomes_project 6 38297190 38297235 + Trbj1-7 TR_J_gene processed_transcript MGP_AJ_T0002566.1 MGP_AJ_G0002466.1 mouse_genomes_project 6 38297190 38297236 + MGP_AJ_P0002566 Trbj1-7 TR_J_gene TR_J_gene MGP_AJ_T0004943.1 MGP_AJ_G0004243.1 mouse_genomes_project 6 40251588 40257923 + 9430018G01Rik antisense antisense MGP_AJ_T0015504.1 MGP_AJ_G0013599.1 mouse_genomes_project 6 97934982 97935589 - processed_pseudogene processed_pseudogene MGP_AJ_T0000298.1 MGP_AJ_G0000242.1 mouse_genomes_project 6 66308709 66309175 + IG_V_pseudogene IG_V_pseudogene MGP_AJ_T0015378.1 MGP_AJ_G0013473.1 mouse_genomes_project 6 60819055 60819271 - processed_pseudogene processed_pseudogene MGP_AJ_T0076619.1 MGP_AJ_G0030478.1 mouse_genomes_project 6 23872595 24752338 - MGP_AJ_P0076619 Grm8 protein_coding protein_coding MGP_AJ_T0076620.1 MGP_AJ_G0030478.1 mouse_genomes_project 6 23872604 24743918 - MGP_AJ_P0076620 Grm8 protein_coding protein_coding MGP_AJ_T0076621.1 MGP_AJ_G0030478.1 mouse_genomes_project 6 23873088 24743988 - MGP_AJ_P0076621 Grm8 protein_coding protein_coding MGP_AJ_T0076622.1 MGP_AJ_G0030478.1 mouse_genomes_project 6 24373594 24751118 - MGP_AJ_P0076622 Grm8 protein_coding protein_coding MGP_AJ_T0076623.1 MGP_AJ_G0030478.1 mouse_genomes_project 6 24550658 24752971 - Grm8 protein_coding processed_transcript MGP_AJ_T0076624.1 MGP_AJ_G0030478.1 mouse_genomes_project 6 24743856 24750922 - MGP_AJ_P0076624 Grm8 protein_coding protein_coding MGP_AJ_T0076625.1 MGP_AJ_G0030478.1 mouse_genomes_project 6 24749820 24752178 - Grm8 protein_coding processed_transcript MGP_AJ_T0101840.1 MGP_AJ_G0039737.1 mouse_genomes_project 6 31115421 31136922 - transcribed_processed_pseudogene processed_transcript MGP_AJ_T0101841.1 MGP_AJ_G0039737.1 mouse_genomes_project 6 31115576 31134691 - transcribed_processed_pseudogene processed_transcript MGP_AJ_T0101842.1 MGP_AJ_G0039737.1 mouse_genomes_project 6 31134659 31134832 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0101843.1 MGP_AJ_G0039737.1 mouse_genomes_project 6 31135099 31136923 - transcribed_processed_pseudogene processed_transcript MGP_AJ_T0008792.1 MGP_AJ_G0007098.1 mouse_genomes_project 6 146701081 146713214 + 1700049E15Rik lincRNA lincRNA MGP_AJ_T0008793.1 MGP_AJ_G0007098.1 mouse_genomes_project 6 146705567 146713188 + 1700049E15Rik lincRNA lincRNA MGP_AJ_T0000215.1 MGP_AJ_G0000161.1 mouse_genomes_project 6 68409187 68409784 + MGP_AJ_P0000215 Igkv3-1 IG_V_gene IG_V_gene MGP_AJ_T0005114.1 MGP_AJ_G0004363.1 mouse_genomes_project 6 143049811 143051682 + Sox5os1 antisense antisense MGP_AJ_T0015508.1 MGP_AJ_G0013603.1 mouse_genomes_project 6 98961941 98975879 + processed_pseudogene processed_pseudogene MGP_AJ_T0015277.1 MGP_AJ_G0013372.1 mouse_genomes_project 6 19438932 19440118 + processed_pseudogene processed_pseudogene MGP_AJ_T0080354.1 MGP_AJ_G0031278.1 mouse_genomes_project 6 125388663 125431193 - MGP_AJ_P0080354 Dyrk4 protein_coding protein_coding MGP_AJ_T0080355.1 MGP_AJ_G0031278.1 mouse_genomes_project 6 125388836 125398028 - MGP_AJ_P0080355 Dyrk4 protein_coding nonsense_mediated_decay MGP_AJ_T0080356.1 MGP_AJ_G0031278.1 mouse_genomes_project 6 125388842 125416922 - Dyrk4 protein_coding processed_transcript MGP_AJ_T0077780.1 MGP_AJ_G0030746.1 mouse_genomes_project 6 52874466 52889481 + MGP_AJ_P0077780 Ppp1r17 protein_coding protein_coding MGP_AJ_T0004980.1 MGP_AJ_G0004270.1 mouse_genomes_project 6 77666520 77763606 - Gm4409 antisense antisense MGP_AJ_T0011834.1 MGP_AJ_G0009932.1 mouse_genomes_project 6 39529028 39529964 + MGP_AJ_P0011834 Olfr451-ps1 polymorphic_pseudogene polymorphic_pseudogene MGP_AJ_T0002018.1 MGP_AJ_G0001931.1 mouse_genomes_project 6 75046507 75047364 - TEC TEC MGP_AJ_T0002668.1 MGP_AJ_G0002550.1 mouse_genomes_project 6 37813127 37813620 + MGP_AJ_P0002668 Trbv4 TR_V_gene TR_V_gene MGP_AJ_T0008785.1 MGP_AJ_G0007093.1 mouse_genomes_project 6 144789681 144797429 - Gm15704 lincRNA lincRNA MGP_AJ_T0080951.1 MGP_AJ_G0031443.1 mouse_genomes_project 6 141594211 141710335 - MGP_AJ_P0080951 Abcc9 protein_coding protein_coding MGP_AJ_T0080952.1 MGP_AJ_G0031443.1 mouse_genomes_project 6 141594211 141710279 - MGP_AJ_P0080952 Abcc9 protein_coding protein_coding MGP_AJ_T0080953.1 MGP_AJ_G0031443.1 mouse_genomes_project 6 141594211 141710335 - MGP_AJ_P0080953 Abcc9 protein_coding protein_coding MGP_AJ_T0080954.1 MGP_AJ_G0031443.1 mouse_genomes_project 6 141595479 141710279 - MGP_AJ_P0080954 Abcc9 protein_coding protein_coding MGP_AJ_T0080955.1 MGP_AJ_G0031443.1 mouse_genomes_project 6 141600364 141710334 - MGP_AJ_P0080955 Abcc9 protein_coding protein_coding MGP_AJ_T0080956.1 MGP_AJ_G0031443.1 mouse_genomes_project 6 141700085 141710376 - MGP_AJ_P0080956 Abcc9 protein_coding protein_coding MGP_AJ_T0015483.1 MGP_AJ_G0013578.1 mouse_genomes_project 6 89647949 89648344 + processed_pseudogene processed_pseudogene MGP_AJ_T0079670.1 MGP_AJ_G0031145.1 mouse_genomes_project 6 114766667 114768853 + MGP_AJ_P0079670 8430408G22Rik protein_coding protein_coding MGP_AJ_T0079671.1 MGP_AJ_G0031145.1 mouse_genomes_project 6 114766686 114768853 + MGP_AJ_P0079671 8430408G22Rik protein_coding protein_coding MGP_AJ_T0079672.1 MGP_AJ_G0031145.1 mouse_genomes_project 6 114766754 114767968 + MGP_AJ_P0079672 8430408G22Rik protein_coding protein_coding MGP_AJ_T0000193.1 MGP_AJ_G0000145.1 mouse_genomes_project 6 67604880 67605447 - MGP_AJ_P0000193 Igkv8-34 IG_V_gene IG_V_gene MGP_AJ_T0008787.1 MGP_AJ_G0007095.1 mouse_genomes_project 6 145681182 145690535 + 4930479D17Rik lincRNA lincRNA MGP_AJ_T0004945.1 MGP_AJ_G0004245.1 mouse_genomes_project 6 45779440 45792466 - 4930563H07Rik antisense antisense MGP_AJ_T0079994.1 MGP_AJ_G0031202.1 mouse_genomes_project 6 121170069 121196010 + MGP_AJ_P0079994 Foxj2 protein_coding protein_coding MGP_AJ_T0079995.1 MGP_AJ_G0031202.1 mouse_genomes_project 6 121170666 121195985 + MGP_AJ_P0079995 Foxj2 protein_coding protein_coding MGP_AJ_T0079996.1 MGP_AJ_G0031202.1 mouse_genomes_project 6 121177385 121183979 + MGP_AJ_P0079996 Foxj2 protein_coding protein_coding MGP_AJ_T0080557.1 MGP_AJ_G0031329.1 mouse_genomes_project 6 128254793 128276951 - MGP_AJ_P0080557 Klri1 protein_coding protein_coding MGP_AJ_T0079985.1 MGP_AJ_G0031200.1 mouse_genomes_project 6 120967792 120971304 + MGP_AJ_P0079985 Dppa3 protein_coding protein_coding MGP_AJ_T0101391.1 MGP_AJ_G0039357.1 mouse_genomes_project 6 134405176 134405291 + Gm25136 snoRNA snoRNA MGP_AJ_T0080988.1 MGP_AJ_G0031449.1 mouse_genomes_project 6 142854535 143240087 - MGP_AJ_P0080988 Sox5 protein_coding protein_coding MGP_AJ_T0080989.1 MGP_AJ_G0031449.1 mouse_genomes_project 6 142854535 143240165 - MGP_AJ_P0080989 Sox5 protein_coding protein_coding MGP_AJ_T0080990.1 MGP_AJ_G0031449.1 mouse_genomes_project 6 142857692 143240155 - MGP_AJ_P0080990 Sox5 protein_coding protein_coding MGP_AJ_T0080991.1 MGP_AJ_G0031449.1 mouse_genomes_project 6 142858912 142972596 - MGP_AJ_P0080991 Sox5 protein_coding protein_coding MGP_AJ_T0080992.1 MGP_AJ_G0031449.1 mouse_genomes_project 6 142859047 143240059 - MGP_AJ_P0080992 Sox5 protein_coding protein_coding MGP_AJ_T0080993.1 MGP_AJ_G0031449.1 mouse_genomes_project 6 142865549 142972591 - Sox5 protein_coding processed_transcript MGP_AJ_T0080994.1 MGP_AJ_G0031449.1 mouse_genomes_project 6 142869460 143820322 - Sox5 protein_coding retained_intron MGP_AJ_T0080995.1 MGP_AJ_G0031449.1 mouse_genomes_project 6 142870536 142972587 - MGP_AJ_P0080995 Sox5 protein_coding protein_coding MGP_AJ_T0080996.1 MGP_AJ_G0031449.1 mouse_genomes_project 6 142886672 142972578 - MGP_AJ_P0080996 Sox5 protein_coding protein_coding MGP_AJ_T0080997.1 MGP_AJ_G0031449.1 mouse_genomes_project 6 142931168 143235034 - Sox5 protein_coding retained_intron MGP_AJ_T0080998.1 MGP_AJ_G0031449.1 mouse_genomes_project 6 143049045 143240087 - Sox5 protein_coding retained_intron MGP_AJ_T0080999.1 MGP_AJ_G0031449.1 mouse_genomes_project 6 143133749 143820264 - Sox5 protein_coding processed_transcript MGP_AJ_T0081000.1 MGP_AJ_G0031449.1 mouse_genomes_project 6 143145821 143234664 - Sox5 protein_coding processed_transcript MGP_AJ_T0081001.1 MGP_AJ_G0031449.1 mouse_genomes_project 6 143184207 143240165 - Sox5 protein_coding retained_intron MGP_AJ_T0005088.1 MGP_AJ_G0004341.1 mouse_genomes_project 6 126291423 126292773 + Gm42738 antisense antisense MGP_AJ_T0076748.1 MGP_AJ_G0030503.1 mouse_genomes_project 6 26388846 26391342 + Smo protein_coding retained_intron MGP_AJ_T0076749.1 MGP_AJ_G0030503.1 mouse_genomes_project 6 26389032 26418750 + MGP_AJ_P0076749 Smo protein_coding protein_coding MGP_AJ_T0080035.1 MGP_AJ_G0031218.1 mouse_genomes_project 6 122141455 122178306 + MGP_AJ_P0080035 Vmn2r24 protein_coding protein_coding MGP_AJ_T0005099.1 MGP_AJ_G0004350.1 mouse_genomes_project 6 133142310 133234166 - Gm44293 antisense antisense MGP_AJ_T0079711.1 MGP_AJ_G0031153.1 mouse_genomes_project 6 116263328 116309878 - MGP_AJ_P0079711 Ret protein_coding protein_coding MGP_AJ_T0079712.1 MGP_AJ_G0031153.1 mouse_genomes_project 6 116266149 116310463 - MGP_AJ_P0079712 Ret protein_coding protein_coding MGP_AJ_T0101333.1 MGP_AJ_G0039299.1 mouse_genomes_project 6 35732876 35733002 + Gm23010 snoRNA snoRNA MGP_AJ_T0077992.1 MGP_AJ_G0030814.1 mouse_genomes_project 6 64318588 64358527 + Serbp1 protein_coding processed_transcript MGP_AJ_T0077993.1 MGP_AJ_G0030814.1 mouse_genomes_project 6 64353878 64385104 + MGP_AJ_P0077993 Serbp1 protein_coding protein_coding MGP_AJ_T0077994.1 MGP_AJ_G0030814.1 mouse_genomes_project 6 64354237 64371595 + MGP_AJ_P0077994 Serbp1 protein_coding protein_coding MGP_AJ_T0077995.1 MGP_AJ_G0030814.1 mouse_genomes_project 6 64354242 64356609 + Serbp1 protein_coding retained_intron MGP_AJ_T0077996.1 MGP_AJ_G0030814.1 mouse_genomes_project 6 64354259 64371355 + MGP_AJ_P0077996 Serbp1 protein_coding protein_coding MGP_AJ_T0077997.1 MGP_AJ_G0030814.1 mouse_genomes_project 6 64354264 64371325 + MGP_AJ_P0077997 Serbp1 protein_coding protein_coding MGP_AJ_T0077998.1 MGP_AJ_G0030814.1 mouse_genomes_project 6 64354265 64361265 + Serbp1 protein_coding retained_intron MGP_AJ_T0077999.1 MGP_AJ_G0030814.1 mouse_genomes_project 6 64354265 64371600 + MGP_AJ_P0077999 Serbp1 protein_coding protein_coding MGP_AJ_T0078000.1 MGP_AJ_G0030814.1 mouse_genomes_project 6 64354265 64371325 + MGP_AJ_P0078000 Serbp1 protein_coding nonsense_mediated_decay MGP_AJ_T0078001.1 MGP_AJ_G0030814.1 mouse_genomes_project 6 64354270 64361860 + Serbp1 protein_coding retained_intron MGP_AJ_T0078002.1 MGP_AJ_G0030814.1 mouse_genomes_project 6 64354292 64365036 + MGP_AJ_P0078002 Serbp1 protein_coding nonsense_mediated_decay MGP_AJ_T0078003.1 MGP_AJ_G0030814.1 mouse_genomes_project 6 64354325 64371292 + MGP_AJ_P0078003 Serbp1 protein_coding protein_coding MGP_AJ_T0078004.1 MGP_AJ_G0030814.1 mouse_genomes_project 6 64354333 64359495 + Serbp1 protein_coding retained_intron MGP_AJ_T0078005.1 MGP_AJ_G0030814.1 mouse_genomes_project 6 64354511 64360110 + MGP_AJ_P0078005 Serbp1 protein_coding protein_coding MGP_AJ_T0078006.1 MGP_AJ_G0030814.1 mouse_genomes_project 6 64354584 64369043 + MGP_AJ_P0078006 Serbp1 protein_coding nonsense_mediated_decay MGP_AJ_T0078007.1 MGP_AJ_G0030814.1 mouse_genomes_project 6 64359133 64369060 + Serbp1 protein_coding retained_intron MGP_AJ_T0077243.1 MGP_AJ_G0030607.1 mouse_genomes_project 6 38455607 38473102 - MGP_AJ_P0077243 Kel protein_coding protein_coding MGP_AJ_T0077244.1 MGP_AJ_G0030607.1 mouse_genomes_project 6 38455612 38457121 - MGP_AJ_P0077244 Kel protein_coding protein_coding MGP_AJ_T0077245.1 MGP_AJ_G0030607.1 mouse_genomes_project 6 38455631 38456980 - Kel protein_coding processed_transcript MGP_AJ_T0077246.1 MGP_AJ_G0030607.1 mouse_genomes_project 6 38457147 38467927 - MGP_AJ_P0077246 Kel protein_coding protein_coding MGP_AJ_T0077247.1 MGP_AJ_G0030607.1 mouse_genomes_project 6 38457562 38458088 - Kel protein_coding retained_intron MGP_AJ_T0015567.1 MGP_AJ_G0013662.1 mouse_genomes_project 6 119709402 119709675 - processed_pseudogene processed_pseudogene MGP_AJ_T0002170.1 MGP_AJ_G0002082.1 mouse_genomes_project 6 139568726 139571045 - TEC TEC MGP_AJ_T0080606.1 MGP_AJ_G0031354.1 mouse_genomes_project 6 131019268 131123009 - MGP_AJ_P0080606 Gm8882 protein_coding protein_coding MGP_AJ_T0080411.1 MGP_AJ_G0031291.1 mouse_genomes_project 6 126865068 126899324 - MGP_AJ_P0080411 Tulp3 protein_coding protein_coding MGP_AJ_T0080412.1 MGP_AJ_G0031291.1 mouse_genomes_project 6 126866891 126869454 - Tulp3 protein_coding processed_transcript MGP_AJ_T0080413.1 MGP_AJ_G0031291.1 mouse_genomes_project 6 126875537 126899314 - Tulp3 protein_coding retained_intron MGP_AJ_T0080414.1 MGP_AJ_G0031291.1 mouse_genomes_project 6 126878166 126899288 - MGP_AJ_P0080414 Tulp3 protein_coding protein_coding MGP_AJ_T0080415.1 MGP_AJ_G0031291.1 mouse_genomes_project 6 126884917 126888204 - Tulp3 protein_coding retained_intron MGP_AJ_T0080416.1 MGP_AJ_G0031291.1 mouse_genomes_project 6 126885596 126899298 - MGP_AJ_P0080416 Tulp3 protein_coding protein_coding MGP_AJ_T0015602.1 MGP_AJ_G0013697.1 mouse_genomes_project 6 125935107 125935691 + processed_pseudogene processed_pseudogene MGP_AJ_T0100123.1 MGP_AJ_G0038089.1 mouse_genomes_project 6 128463415 128463489 + Gm23977 snRNA snRNA MGP_AJ_T0002107.1 MGP_AJ_G0002020.1 mouse_genomes_project 6 99640071 99642180 + TEC TEC MGP_AJ_T0080128.1 MGP_AJ_G0031238.1 mouse_genomes_project 6 123293968 123295927 + MGP_AJ_P0080128 Spsb2 protein_coding protein_coding MGP_AJ_T0080129.1 MGP_AJ_G0031238.1 mouse_genomes_project 6 123294192 123295644 + MGP_AJ_P0080129 Spsb2 protein_coding protein_coding MGP_AJ_T0080130.1 MGP_AJ_G0031238.1 mouse_genomes_project 6 123294213 123295927 + MGP_AJ_P0080130 Spsb2 protein_coding protein_coding MGP_AJ_T0080131.1 MGP_AJ_G0031238.1 mouse_genomes_project 6 123294226 123295246 + MGP_AJ_P0080131 Spsb2 protein_coding protein_coding MGP_AJ_T0080132.1 MGP_AJ_G0031238.1 mouse_genomes_project 6 123294605 123295927 + MGP_AJ_P0080132 Spsb2 protein_coding protein_coding MGP_AJ_T0077561.1 MGP_AJ_G0030696.1 mouse_genomes_project 6 46203794 46285028 + MGP_AJ_P0077561 Stk31 protein_coding protein_coding MGP_AJ_T0077562.1 MGP_AJ_G0030696.1 mouse_genomes_project 6 46203825 46284879 + MGP_AJ_P0077562 Stk31 protein_coding protein_coding MGP_AJ_T0077563.1 MGP_AJ_G0030696.1 mouse_genomes_project 6 46203825 46284879 + MGP_AJ_P0077563 Stk31 protein_coding protein_coding MGP_AJ_T0077564.1 MGP_AJ_G0030696.1 mouse_genomes_project 6 46206240 46285029 + MGP_AJ_P0077564 Stk31 protein_coding unknown_likely_coding MGP_AJ_T0077565.1 MGP_AJ_G0030696.1 mouse_genomes_project 6 46251244 46285027 + MGP_AJ_P0077565 Stk31 protein_coding protein_coding MGP_AJ_T0101325.1 MGP_AJ_G0039291.1 mouse_genomes_project 6 10785418 10785534 + Gm23760 snoRNA snoRNA MGP_AJ_T0004897.1 MGP_AJ_G0004208.1 mouse_genomes_project 6 3591317 3632519 - Dlx6os1 antisense antisense MGP_AJ_T0004898.1 MGP_AJ_G0004208.1 mouse_genomes_project 6 3591671 3642891 - Dlx6os1 antisense antisense MGP_AJ_T0008514.1 MGP_AJ_G0006893.1 mouse_genomes_project 6 4525757 4539298 + Gm44217 lincRNA lincRNA MGP_AJ_T0002022.1 MGP_AJ_G0001935.1 mouse_genomes_project 6 75195576 75198685 - TEC TEC MGP_AJ_T0079147.1 MGP_AJ_G0031048.1 mouse_genomes_project 6 96331027 96435433 - MGP_AJ_P0079147 Gm765 protein_coding protein_coding MGP_AJ_T0079148.1 MGP_AJ_G0031048.1 mouse_genomes_project 6 96434140 96435338 - Gm765 protein_coding retained_intron MGP_AJ_T0081059.1 MGP_AJ_G0031459.1 mouse_genomes_project 6 144980286 145014480 + MGP_AJ_P0081059 Sspn protein_coding protein_coding MGP_AJ_T0081060.1 MGP_AJ_G0031459.1 mouse_genomes_project 6 144982797 145014480 + MGP_AJ_P0081060 Sspn protein_coding protein_coding MGP_AJ_T0081061.1 MGP_AJ_G0031459.1 mouse_genomes_project 6 145002411 145014480 + MGP_AJ_P0081061 Sspn protein_coding protein_coding MGP_AJ_T0079037.1 MGP_AJ_G0031024.1 mouse_genomes_project 6 90154332 90237422 + MGP_AJ_P0079037 Nr2c2 protein_coding protein_coding MGP_AJ_T0079038.1 MGP_AJ_G0031024.1 mouse_genomes_project 6 90155462 90232576 + MGP_AJ_P0079038 Nr2c2 protein_coding protein_coding MGP_AJ_T0079039.1 MGP_AJ_G0031024.1 mouse_genomes_project 6 90202242 90204075 + MGP_AJ_P0079039 Nr2c2 protein_coding protein_coding MGP_AJ_T0079040.1 MGP_AJ_G0031024.1 mouse_genomes_project 6 90202843 90206470 + Nr2c2 protein_coding retained_intron MGP_AJ_T0079041.1 MGP_AJ_G0031024.1 mouse_genomes_project 6 90204038 90233539 + MGP_AJ_P0079041 Nr2c2 protein_coding nonsense_mediated_decay MGP_AJ_T0079042.1 MGP_AJ_G0031024.1 mouse_genomes_project 6 90210468 90221466 + Nr2c2 protein_coding processed_transcript MGP_AJ_T0079043.1 MGP_AJ_G0031024.1 mouse_genomes_project 6 90221873 90223720 + Nr2c2 protein_coding retained_intron MGP_AJ_T0079044.1 MGP_AJ_G0031024.1 mouse_genomes_project 6 90229077 90238910 + Nr2c2 protein_coding processed_transcript MGP_AJ_T0001996.1 MGP_AJ_G0001909.1 mouse_genomes_project 6 56073015 56075110 + TEC TEC MGP_AJ_T0102702.1 MGP_AJ_G0040444.1 mouse_genomes_project 6 84249439 84250576 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0080037.1 MGP_AJ_G0031220.1 mouse_genomes_project 6 122596335 122627997 - MGP_AJ_P0080037 Vmn2r27 protein_coding protein_coding MGP_AJ_T0001906.1 MGP_AJ_G0001819.1 mouse_genomes_project 6 1201508 1202233 - TEC TEC MGP_AJ_T0077229.1 MGP_AJ_G0030599.1 mouse_genomes_project 6 38176303 38179196 + MGP_AJ_P0077229 Try10 protein_coding protein_coding MGP_AJ_T0005635.1 MGP_AJ_G0004743.1 mouse_genomes_project 6 114300984 114309558 - 9530062K07Rik bidirectional_promoter_lncRNA bidirectional_promoter_lncRNA MGP_AJ_T0010779.1 MGP_AJ_G0008901.1 mouse_genomes_project 6 81195654 81195761 - Mir6374 miRNA miRNA MGP_AJ_T0077176.1 MGP_AJ_G0030578.1 mouse_genomes_project 6 37070818 37143116 + MGP_AJ_P0077176 Agk protein_coding protein_coding MGP_AJ_T0077177.1 MGP_AJ_G0030578.1 mouse_genomes_project 6 37071088 37143116 + MGP_AJ_P0077177 Agk protein_coding unknown_likely_coding MGP_AJ_T0077178.1 MGP_AJ_G0030578.1 mouse_genomes_project 6 37071131 37114985 + Agk protein_coding retained_intron MGP_AJ_T0077179.1 MGP_AJ_G0030578.1 mouse_genomes_project 6 37071133 37072414 + Agk protein_coding retained_intron MGP_AJ_T0077180.1 MGP_AJ_G0030578.1 mouse_genomes_project 6 37071154 37095566 + Agk protein_coding retained_intron MGP_AJ_T0077181.1 MGP_AJ_G0030578.1 mouse_genomes_project 6 37075553 37094215 + Agk protein_coding processed_transcript MGP_AJ_T0077182.1 MGP_AJ_G0030578.1 mouse_genomes_project 6 37075553 37103631 + MGP_AJ_P0077182 Agk protein_coding nonsense_mediated_decay MGP_AJ_T0077183.1 MGP_AJ_G0030578.1 mouse_genomes_project 6 37096110 37099112 + Agk protein_coding retained_intron MGP_AJ_T0077184.1 MGP_AJ_G0030578.1 mouse_genomes_project 6 37122141 37142028 + Agk protein_coding retained_intron MGP_AJ_T0015548.1 MGP_AJ_G0013643.1 mouse_genomes_project 6 112871715 112872103 + processed_pseudogene processed_pseudogene MGP_AJ_T0100096.1 MGP_AJ_G0038062.1 mouse_genomes_project 6 73874725 73874886 - Gm22283 snRNA snRNA MGP_AJ_T0015512.1 MGP_AJ_G0013607.1 mouse_genomes_project 6 100168875 100169660 + processed_pseudogene processed_pseudogene MGP_AJ_T0077304.1 MGP_AJ_G0030623.1 mouse_genomes_project 6 39130590 39131472 + MGP_AJ_P0077304 Tas2r143 protein_coding protein_coding MGP_AJ_T0010755.1 MGP_AJ_G0008877.1 mouse_genomes_project 6 27744028 27744116 - Mir29a miRNA miRNA MGP_AJ_T0015611.1 MGP_AJ_G0013706.1 mouse_genomes_project 6 127312482 127312599 + processed_pseudogene processed_pseudogene MGP_AJ_T0015561.1 MGP_AJ_G0013656.1 mouse_genomes_project 6 116731995 116733593 - processed_pseudogene processed_pseudogene MGP_AJ_T0000214.1 MGP_AJ_G0000160.1 mouse_genomes_project 6 68389572 68390161 + MGP_AJ_P0000214 IG_V_gene IG_V_gene MGP_AJ_T0077240.1 MGP_AJ_G0030605.1 mouse_genomes_project 6 38421483 38450047 - MGP_AJ_P0077240 Trpv5 protein_coding protein_coding MGP_AJ_T0077241.1 MGP_AJ_G0030605.1 mouse_genomes_project 6 38422440 38449933 - MGP_AJ_P0077241 Trpv5 protein_coding protein_coding MGP_AJ_T0015487.1 MGP_AJ_G0013582.1 mouse_genomes_project 6 91219475 91220462 - processed_pseudogene processed_pseudogene MGP_AJ_T0101384.1 MGP_AJ_G0039350.1 mouse_genomes_project 6 122543224 122543334 + Gm23554 snoRNA snoRNA MGP_AJ_T0077868.1 MGP_AJ_G0030783.1 mouse_genomes_project 6 55287952 55289037 + MGP_AJ_P0077868 Vmn1r28 protein_coding protein_coding MGP_AJ_T0005625.1 MGP_AJ_G0004738.1 mouse_genomes_project 6 58260151 58262384 - A730020E08Rik bidirectional_promoter_lncRNA bidirectional_promoter_lncRNA MGP_AJ_T0005626.1 MGP_AJ_G0004738.1 mouse_genomes_project 6 58261841 58268131 - A730020E08Rik bidirectional_promoter_lncRNA bidirectional_promoter_lncRNA MGP_AJ_T0005627.1 MGP_AJ_G0004738.1 mouse_genomes_project 6 58263881 58268671 - A730020E08Rik bidirectional_promoter_lncRNA bidirectional_promoter_lncRNA MGP_AJ_T0004936.1 MGP_AJ_G0004237.1 mouse_genomes_project 6 36609418 36609858 - Gm26833 antisense antisense MGP_AJ_T0102058.1 MGP_AJ_G0039844.1 mouse_genomes_project 6 130217667 130223944 + transcribed_unprocessed_pseudogene processed_transcript MGP_AJ_T0102059.1 MGP_AJ_G0039844.1 mouse_genomes_project 6 130217689 130222966 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_AJ_T0080603.1 MGP_AJ_G0031351.1 mouse_genomes_project 6 130372391 130373355 - MGP_AJ_P0080603 Tas2r105 protein_coding protein_coding MGP_AJ_T0079939.1 MGP_AJ_G0031192.1 mouse_genomes_project 6 120595760 120607242 - MGP_AJ_P0079939 Klrg1 protein_coding protein_coding MGP_AJ_T0001971.1 MGP_AJ_G0001884.1 mouse_genomes_project 6 42798048 42799996 + TEC TEC MGP_AJ_T0076839.1 MGP_AJ_G0030514.1 mouse_genomes_project 6 27279837 27300573 + MGP_AJ_P0076839 Cpa5 protein_coding protein_coding MGP_AJ_T0076840.1 MGP_AJ_G0030514.1 mouse_genomes_project 6 27279878 27300348 + MGP_AJ_P0076840 Cpa5 protein_coding protein_coding MGP_AJ_T0076841.1 MGP_AJ_G0030514.1 mouse_genomes_project 6 27281015 27300571 + MGP_AJ_P0076841 Cpa5 protein_coding protein_coding MGP_AJ_T0076842.1 MGP_AJ_G0030514.1 mouse_genomes_project 6 27281382 27300264 + MGP_AJ_P0076842 Cpa5 protein_coding nonsense_mediated_decay MGP_AJ_T0077845.1 MGP_AJ_G0030773.1 mouse_genomes_project 6 54491735 54572427 + MGP_AJ_P0077845 Herc6 protein_coding protein_coding MGP_AJ_T0077846.1 MGP_AJ_G0030773.1 mouse_genomes_project 6 54491743 54495316 + MGP_AJ_P0077846 Herc6 protein_coding nonsense_mediated_decay MGP_AJ_T0077847.1 MGP_AJ_G0030773.1 mouse_genomes_project 6 54511405 54550195 + Herc6 protein_coding retained_intron MGP_AJ_T0077848.1 MGP_AJ_G0030773.1 mouse_genomes_project 6 54513843 54518199 + Herc6 protein_coding retained_intron MGP_AJ_T0077849.1 MGP_AJ_G0030773.1 mouse_genomes_project 6 54514743 54526241 + Herc6 protein_coding retained_intron MGP_AJ_T0077850.1 MGP_AJ_G0030773.1 mouse_genomes_project 6 54518136 54527498 + Herc6 protein_coding retained_intron MGP_AJ_T0002010.1 MGP_AJ_G0001923.1 mouse_genomes_project 6 70331620 70334119 - TEC TEC MGP_AJ_T0008625.1 MGP_AJ_G0006969.1 mouse_genomes_project 6 57124651 57250544 + lincRNA lincRNA MGP_AJ_T0008626.1 MGP_AJ_G0006969.1 mouse_genomes_project 6 57176452 57180360 + lincRNA lincRNA MGP_AJ_T0015663.1 MGP_AJ_G0013758.1 mouse_genomes_project 6 141124804 141125874 + processed_pseudogene processed_pseudogene MGP_AJ_T0015377.1 MGP_AJ_G0013472.1 mouse_genomes_project 6 60207728 60208419 + processed_pseudogene processed_pseudogene MGP_AJ_T0101352.1 MGP_AJ_G0039318.1 mouse_genomes_project 6 65091859 65091999 - Gm25910 snoRNA snoRNA MGP_AJ_T0076496.1 MGP_AJ_G0030446.1 mouse_genomes_project 6 14644472 14687337 - MGP_AJ_P0076496 Wnt2 protein_coding protein_coding MGP_AJ_T0077636.1 MGP_AJ_G0030713.1 mouse_genomes_project 6 49037607 49040441 - MGP_AJ_P0077636 Hoxa5 protein_coding protein_coding MGP_AJ_T0001981.1 MGP_AJ_G0001894.1 mouse_genomes_project 6 46052573 46054011 + TEC TEC MGP_AJ_T0008606.1 MGP_AJ_G0006955.1 mouse_genomes_project 6 48217714 48218968 - 0610033M10Rik lincRNA lincRNA MGP_AJ_T0008607.1 MGP_AJ_G0006955.1 mouse_genomes_project 6 48217953 48218782 - 0610033M10Rik lincRNA lincRNA MGP_AJ_T0018231.1 MGP_AJ_G0015602.1 mouse_genomes_project 6 27900987 28018815 + 2210408F21Rik processed_transcript lincRNA MGP_AJ_T0018232.1 MGP_AJ_G0015602.1 mouse_genomes_project 6 27900987 28018972 + 2210408F21Rik processed_transcript lincRNA MGP_AJ_T0018233.1 MGP_AJ_G0015602.1 mouse_genomes_project 6 27900987 28018941 + 2210408F21Rik processed_transcript lincRNA MGP_AJ_T0018234.1 MGP_AJ_G0015602.1 mouse_genomes_project 6 27900993 28018960 + 2210408F21Rik processed_transcript lincRNA MGP_AJ_T0018235.1 MGP_AJ_G0015602.1 mouse_genomes_project 6 27901041 28018953 + 2210408F21Rik processed_transcript lincRNA MGP_AJ_T0018236.1 MGP_AJ_G0015602.1 mouse_genomes_project 6 27901041 28018945 + 2210408F21Rik processed_transcript lincRNA MGP_AJ_T0018237.1 MGP_AJ_G0015602.1 mouse_genomes_project 6 27901058 28009880 + 2210408F21Rik processed_transcript lincRNA MGP_AJ_T0018238.1 MGP_AJ_G0015602.1 mouse_genomes_project 6 27901058 28018878 + 2210408F21Rik processed_transcript lincRNA MGP_AJ_T0018239.1 MGP_AJ_G0015602.1 mouse_genomes_project 6 27901071 28018965 + 2210408F21Rik processed_transcript lincRNA MGP_AJ_T0018240.1 MGP_AJ_G0015602.1 mouse_genomes_project 6 27901077 28018941 + 2210408F21Rik processed_transcript lincRNA MGP_AJ_T0018241.1 MGP_AJ_G0015602.1 mouse_genomes_project 6 27901083 28018968 + 2210408F21Rik processed_transcript lincRNA MGP_AJ_T0018242.1 MGP_AJ_G0015602.1 mouse_genomes_project 6 27959365 27974800 + 2210408F21Rik processed_transcript lincRNA MGP_AJ_T0018243.1 MGP_AJ_G0015602.1 mouse_genomes_project 6 27966497 28018971 + 2210408F21Rik processed_transcript lincRNA MGP_AJ_T0018244.1 MGP_AJ_G0015602.1 mouse_genomes_project 6 27974113 27975246 + 2210408F21Rik processed_transcript TEC MGP_AJ_T0018245.1 MGP_AJ_G0015602.1 mouse_genomes_project 6 28003526 28018953 + 2210408F21Rik processed_transcript lincRNA MGP_AJ_T0079872.1 MGP_AJ_G0031178.1 mouse_genomes_project 6 118952520 118961238 - Atp6v1e1 protein_coding retained_intron MGP_AJ_T0079873.1 MGP_AJ_G0031178.1 mouse_genomes_project 6 118953449 118979483 - MGP_AJ_P0079873 Atp6v1e1 protein_coding protein_coding MGP_AJ_T0079874.1 MGP_AJ_G0031178.1 mouse_genomes_project 6 118953459 118975095 - MGP_AJ_P0079874 Atp6v1e1 protein_coding protein_coding MGP_AJ_T0079875.1 MGP_AJ_G0031178.1 mouse_genomes_project 6 118962565 118979375 - Atp6v1e1 protein_coding retained_intron MGP_AJ_T0079876.1 MGP_AJ_G0031178.1 mouse_genomes_project 6 118962903 118979382 - MGP_AJ_P0079876 Atp6v1e1 protein_coding protein_coding MGP_AJ_T0079877.1 MGP_AJ_G0031178.1 mouse_genomes_project 6 118966384 118979229 - MGP_AJ_P0079877 Atp6v1e1 protein_coding protein_coding MGP_AJ_T0002055.1 MGP_AJ_G0001968.1 mouse_genomes_project 6 85169204 85172567 - TEC TEC MGP_AJ_T0002001.1 MGP_AJ_G0001914.1 mouse_genomes_project 6 68986928 68989783 + TEC TEC MGP_AJ_T0080220.1 MGP_AJ_G0031252.1 mouse_genomes_project 6 123521889 123531548 + MGP_AJ_P0080220 Ing4 protein_coding protein_coding MGP_AJ_T0080221.1 MGP_AJ_G0031252.1 mouse_genomes_project 6 123521965 123528725 + Ing4 protein_coding retained_intron MGP_AJ_T0080222.1 MGP_AJ_G0031252.1 mouse_genomes_project 6 123521965 123531810 + MGP_AJ_P0080222 Ing4 protein_coding protein_coding MGP_AJ_T0080223.1 MGP_AJ_G0031252.1 mouse_genomes_project 6 123521977 123530118 + Ing4 protein_coding retained_intron MGP_AJ_T0080224.1 MGP_AJ_G0031252.1 mouse_genomes_project 6 123521990 123531354 + Ing4 protein_coding retained_intron MGP_AJ_T0080225.1 MGP_AJ_G0031252.1 mouse_genomes_project 6 123521990 123531811 + MGP_AJ_P0080225 Ing4 protein_coding nonsense_mediated_decay MGP_AJ_T0080226.1 MGP_AJ_G0031252.1 mouse_genomes_project 6 123526106 123530552 + Ing4 protein_coding retained_intron MGP_AJ_T0080227.1 MGP_AJ_G0031252.1 mouse_genomes_project 6 123528061 123531811 + Ing4 protein_coding retained_intron MGP_AJ_T0080228.1 MGP_AJ_G0031252.1 mouse_genomes_project 6 123530185 123531164 + Ing4 protein_coding retained_intron MGP_AJ_T0077223.1 MGP_AJ_G0030594.1 mouse_genomes_project 6 37748521 37752441 - MGP_AJ_P0077223 protein_coding protein_coding MGP_AJ_T0002079.1 MGP_AJ_G0001992.1 mouse_genomes_project 6 89463872 89465074 + TEC TEC MGP_AJ_T0077544.1 MGP_AJ_G0030692.1 mouse_genomes_project 6 45878182 46011604 - MGP_AJ_P0077544 Igf2bp3 protein_coding protein_coding MGP_AJ_T0077545.1 MGP_AJ_G0030692.1 mouse_genomes_project 6 45881136 45887221 - Igf2bp3 protein_coding retained_intron MGP_AJ_T0077546.1 MGP_AJ_G0030692.1 mouse_genomes_project 6 45886119 46010806 - Igf2bp3 protein_coding retained_intron MGP_AJ_T0077547.1 MGP_AJ_G0030692.1 mouse_genomes_project 6 45900617 45904322 - Igf2bp3 protein_coding processed_transcript MGP_AJ_T0077548.1 MGP_AJ_G0030692.1 mouse_genomes_project 6 45964044 46011349 - Igf2bp3 protein_coding processed_transcript MGP_AJ_T0000310.1 MGP_AJ_G0000254.1 mouse_genomes_project 6 67415083 67415650 - IG_V_pseudogene IG_V_pseudogene MGP_AJ_T0000138.1 MGP_AJ_G0000105.1 mouse_genomes_project 6 65010175 65010473 + MGP_AJ_P0000138 Igkv9-129 IG_V_gene IG_V_gene MGP_AJ_T0000139.1 MGP_AJ_G0000105.1 mouse_genomes_project 6 65010178 65010473 + MGP_AJ_P0000139 Igkv9-129 IG_V_gene IG_V_gene MGP_AJ_T0100103.1 MGP_AJ_G0038069.1 mouse_genomes_project 6 94659747 94659851 - Gm26011 snRNA snRNA MGP_AJ_T0077028.1 MGP_AJ_G0030548.1 mouse_genomes_project 6 33529386 33990864 - MGP_AJ_P0077028 Dgki protein_coding protein_coding MGP_AJ_T0077029.1 MGP_AJ_G0030548.1 mouse_genomes_project 6 33530345 33991074 - MGP_AJ_P0077029 Dgki protein_coding nonsense_mediated_decay MGP_AJ_T0077030.1 MGP_AJ_G0030548.1 mouse_genomes_project 6 33530345 33991074 - MGP_AJ_P0077030 Dgki protein_coding nonsense_mediated_decay MGP_AJ_T0077031.1 MGP_AJ_G0030548.1 mouse_genomes_project 6 33530345 33991074 - MGP_AJ_P0077031 Dgki protein_coding protein_coding MGP_AJ_T0077032.1 MGP_AJ_G0030548.1 mouse_genomes_project 6 33530520 33990527 - MGP_AJ_P0077032 Dgki protein_coding protein_coding MGP_AJ_T0077033.1 MGP_AJ_G0030548.1 mouse_genomes_project 6 33594376 33717341 - Dgki protein_coding processed_transcript MGP_AJ_T0077034.1 MGP_AJ_G0030548.1 mouse_genomes_project 6 33720920 33750724 - Dgki protein_coding processed_transcript MGP_AJ_T0077035.1 MGP_AJ_G0030548.1 mouse_genomes_project 6 33918550 33990634 - Dgki protein_coding processed_transcript MGP_AJ_T0078415.1 MGP_AJ_G0030901.1 mouse_genomes_project 6 81275328 81304483 - MGP_AJ_P0078415 Dguok protein_coding protein_coding MGP_AJ_T0078416.1 MGP_AJ_G0030901.1 mouse_genomes_project 6 81275330 81304437 - MGP_AJ_P0078416 Dguok protein_coding nonsense_mediated_decay MGP_AJ_T0078417.1 MGP_AJ_G0030901.1 mouse_genomes_project 6 81275420 81304415 - MGP_AJ_P0078417 Dguok protein_coding nonsense_mediated_decay MGP_AJ_T0078418.1 MGP_AJ_G0030901.1 mouse_genomes_project 6 81275976 81288777 - Dguok protein_coding processed_transcript MGP_AJ_T0078419.1 MGP_AJ_G0030901.1 mouse_genomes_project 6 81276324 81282116 - Dguok protein_coding processed_transcript MGP_AJ_T0078420.1 MGP_AJ_G0030901.1 mouse_genomes_project 6 81283084 81285524 - Dguok protein_coding retained_intron MGP_AJ_T0078421.1 MGP_AJ_G0030901.1 mouse_genomes_project 6 81285311 81304501 - Dguok protein_coding retained_intron MGP_AJ_T0015225.1 MGP_AJ_G0013320.1 mouse_genomes_project 6 574454 574842 - processed_pseudogene processed_pseudogene MGP_AJ_T0008572.1 MGP_AJ_G0006933.1 mouse_genomes_project 6 32025310 32031274 + 1700065J11Rik lincRNA lincRNA MGP_AJ_T0078324.1 MGP_AJ_G0030882.1 mouse_genomes_project 6 80848281 80856967 + MGP_AJ_P0078324 protein_coding unknown_likely_coding MGP_AJ_T0078325.1 MGP_AJ_G0030882.1 mouse_genomes_project 6 80848445 80850337 + MGP_AJ_P0078325 protein_coding non_stop_decay MGP_AJ_T0015370.1 MGP_AJ_G0013465.1 mouse_genomes_project 6 58106675 58107561 - processed_pseudogene processed_pseudogene MGP_AJ_T0100092.1 MGP_AJ_G0038058.1 mouse_genomes_project 6 62940207 62940313 - Gm23543 snRNA snRNA MGP_AJ_T0005019.1 MGP_AJ_G0004291.1 mouse_genomes_project 6 85909460 85912758 + Gm5577 antisense antisense MGP_AJ_T0005020.1 MGP_AJ_G0004291.1 mouse_genomes_project 6 85910260 85912750 + Gm5577 antisense antisense MGP_AJ_T0005021.1 MGP_AJ_G0004291.1 mouse_genomes_project 6 85910260 85934213 + Gm5577 antisense antisense MGP_AJ_T0002007.1 MGP_AJ_G0001920.1 mouse_genomes_project 6 69550667 69551293 - TEC TEC MGP_AJ_T0080657.1 MGP_AJ_G0031383.1 mouse_genomes_project 6 133547872 133626492 - MGP_AJ_P0080657 Dusp16 protein_coding protein_coding MGP_AJ_T0080658.1 MGP_AJ_G0031383.1 mouse_genomes_project 6 133547877 133626642 - MGP_AJ_P0080658 Dusp16 protein_coding protein_coding MGP_AJ_T0080659.1 MGP_AJ_G0031383.1 mouse_genomes_project 6 133550237 133594207 - MGP_AJ_P0080659 Dusp16 protein_coding nonsense_mediated_decay MGP_AJ_T0080660.1 MGP_AJ_G0031383.1 mouse_genomes_project 6 133551192 133558425 - Dusp16 protein_coding retained_intron MGP_AJ_T0080661.1 MGP_AJ_G0031383.1 mouse_genomes_project 6 133551344 133576797 - Dusp16 protein_coding processed_transcript MGP_AJ_T0080662.1 MGP_AJ_G0031383.1 mouse_genomes_project 6 133552999 133591975 - MGP_AJ_P0080662 Dusp16 protein_coding nonsense_mediated_decay MGP_AJ_T0080663.1 MGP_AJ_G0031383.1 mouse_genomes_project 6 133570500 133625325 - MGP_AJ_P0080663 Dusp16 protein_coding protein_coding MGP_AJ_T0005052.1 MGP_AJ_G0004311.1 mouse_genomes_project 6 110349238 110352509 - 5031434C07Rik antisense antisense MGP_AJ_T0005053.1 MGP_AJ_G0004311.1 mouse_genomes_project 6 110349529 110352510 - 5031434C07Rik antisense antisense MGP_AJ_T0076586.1 MGP_AJ_G0030466.1 mouse_genomes_project 6 21095952 21157362 - MGP_AJ_P0076586 Iqub protein_coding protein_coding MGP_AJ_T0079560.1 MGP_AJ_G0031122.1 mouse_genomes_project 6 113727568 113728447 - MGP_AJ_P0079560 protein_coding protein_coding MGP_AJ_T0005004.1 MGP_AJ_G0004284.1 mouse_genomes_project 6 84271714 84274460 - Gm44941 antisense antisense MGP_AJ_T0079571.1 MGP_AJ_G0031127.1 mouse_genomes_project 6 113938295 113950970 - MGP_AJ_P0079571 Mbd4 protein_coding protein_coding MGP_AJ_T0079572.1 MGP_AJ_G0031127.1 mouse_genomes_project 6 113938797 113946304 - Mbd4 protein_coding processed_transcript MGP_AJ_T0079573.1 MGP_AJ_G0031127.1 mouse_genomes_project 6 113939942 113950964 - MGP_AJ_P0079573 Mbd4 protein_coding nonsense_mediated_decay MGP_AJ_T0079574.1 MGP_AJ_G0031127.1 mouse_genomes_project 6 113939942 113946565 - MGP_AJ_P0079574 Mbd4 protein_coding protein_coding MGP_AJ_T0079575.1 MGP_AJ_G0031127.1 mouse_genomes_project 6 113945290 113950887 - MGP_AJ_P0079575 Mbd4 protein_coding protein_coding MGP_AJ_T0015592.1 MGP_AJ_G0013687.1 mouse_genomes_project 6 124236611 124237001 + processed_pseudogene processed_pseudogene MGP_AJ_T0002723.1 MGP_AJ_G0002595.1 mouse_genomes_project 6 37820717 37820993 + TR_V_pseudogene TR_V_pseudogene MGP_AJ_T0079233.1 MGP_AJ_G0031064.1 mouse_genomes_project 6 104832582 104841144 + MGP_AJ_P0079233 Trnt1 protein_coding protein_coding MGP_AJ_T0079234.1 MGP_AJ_G0031064.1 mouse_genomes_project 6 104832603 104845808 + MGP_AJ_P0079234 Trnt1 protein_coding protein_coding MGP_AJ_T0079235.1 MGP_AJ_G0031064.1 mouse_genomes_project 6 104832628 104846411 + MGP_AJ_P0079235 Trnt1 protein_coding protein_coding MGP_AJ_T0079236.1 MGP_AJ_G0031064.1 mouse_genomes_project 6 104832628 104845117 + MGP_AJ_P0079236 Trnt1 protein_coding protein_coding MGP_AJ_T0079237.1 MGP_AJ_G0031064.1 mouse_genomes_project 6 104832632 104833627 + Trnt1 protein_coding retained_intron MGP_AJ_T0079238.1 MGP_AJ_G0031064.1 mouse_genomes_project 6 104832675 104836518 + Trnt1 protein_coding processed_transcript MGP_AJ_T0079239.1 MGP_AJ_G0031064.1 mouse_genomes_project 6 104832748 104836814 + MGP_AJ_P0079239 Trnt1 protein_coding protein_coding MGP_AJ_T0079240.1 MGP_AJ_G0031064.1 mouse_genomes_project 6 104832969 104837928 + MGP_AJ_P0079240 Trnt1 protein_coding protein_coding MGP_AJ_T0008802.1 MGP_AJ_G0007106.1 mouse_genomes_project 6 148203080 148221436 - 1700003I16Rik lincRNA lincRNA MGP_AJ_T0010750.1 MGP_AJ_G0008872.1 mouse_genomes_project 6 26644320 26644418 + Gm23049 miRNA miRNA MGP_AJ_T0077956.1 MGP_AJ_G0030800.1 mouse_genomes_project 6 62742746 62783406 + MGP_AJ_P0077956 Ndnf protein_coding protein_coding MGP_AJ_T0077957.1 MGP_AJ_G0030800.1 mouse_genomes_project 6 62772509 62774520 + Ndnf protein_coding retained_intron MGP_AJ_T0077734.1 MGP_AJ_G0030734.1 mouse_genomes_project 6 51683230 51760129 + MGP_AJ_P0077734 Znrf2 protein_coding protein_coding MGP_AJ_T0077735.1 MGP_AJ_G0030734.1 mouse_genomes_project 6 51683584 51745050 + MGP_AJ_P0077735 Znrf2 protein_coding nonsense_mediated_decay MGP_AJ_T0077736.1 MGP_AJ_G0030734.1 mouse_genomes_project 6 51683762 51751740 + MGP_AJ_P0077736 Znrf2 protein_coding protein_coding MGP_AJ_T0078619.1 MGP_AJ_G0030940.1 mouse_genomes_project 6 84284899 84296605 - MGP_AJ_P0078619 Pcyox1 protein_coding protein_coding MGP_AJ_T0078620.1 MGP_AJ_G0030940.1 mouse_genomes_project 6 84288175 84296592 - MGP_AJ_P0078620 Pcyox1 protein_coding protein_coding MGP_AJ_T0078621.1 MGP_AJ_G0030940.1 mouse_genomes_project 6 84288493 84291846 - MGP_AJ_P0078621 Pcyox1 protein_coding protein_coding MGP_AJ_T0078622.1 MGP_AJ_G0030940.1 mouse_genomes_project 6 84291186 84296594 - MGP_AJ_P0078622 Pcyox1 protein_coding protein_coding MGP_AJ_T0078623.1 MGP_AJ_G0030940.1 mouse_genomes_project 6 84293935 84296077 - Pcyox1 protein_coding retained_intron MGP_AJ_T0078624.1 MGP_AJ_G0030940.1 mouse_genomes_project 6 84295233 84296570 - Pcyox1 protein_coding retained_intron MGP_AJ_T0015368.1 MGP_AJ_G0013463.1 mouse_genomes_project 6 57553101 57553283 - processed_pseudogene processed_pseudogene MGP_AJ_T0081181.1 MGP_AJ_G0031480.1 mouse_genomes_project 6 147833984 147835147 - Caprin2 protein_coding retained_intron MGP_AJ_T0081182.1 MGP_AJ_G0031480.1 mouse_genomes_project 6 147833984 147888271 - MGP_AJ_P0081182 Caprin2 protein_coding protein_coding MGP_AJ_T0081183.1 MGP_AJ_G0031480.1 mouse_genomes_project 6 147833985 147842889 - MGP_AJ_P0081183 Caprin2 protein_coding protein_coding MGP_AJ_T0081184.1 MGP_AJ_G0031480.1 mouse_genomes_project 6 147833985 147888184 - MGP_AJ_P0081184 Caprin2 protein_coding protein_coding MGP_AJ_T0081185.1 MGP_AJ_G0031480.1 mouse_genomes_project 6 147835529 147840677 - Caprin2 protein_coding retained_intron MGP_AJ_T0081186.1 MGP_AJ_G0031480.1 mouse_genomes_project 6 147836057 147842860 - Caprin2 protein_coding processed_transcript MGP_AJ_T0081187.1 MGP_AJ_G0031480.1 mouse_genomes_project 6 147839102 147851968 - Caprin2 protein_coding processed_transcript MGP_AJ_T0081188.1 MGP_AJ_G0031480.1 mouse_genomes_project 6 147869068 147887493 - MGP_AJ_P0081188 Caprin2 protein_coding protein_coding MGP_AJ_T0081189.1 MGP_AJ_G0031480.1 mouse_genomes_project 6 147875702 147882734 - Caprin2 protein_coding retained_intron MGP_AJ_T0081190.1 MGP_AJ_G0031480.1 mouse_genomes_project 6 147878835 147888196 - Caprin2 protein_coding processed_transcript MGP_AJ_T0081191.1 MGP_AJ_G0031480.1 mouse_genomes_project 6 147886203 147887643 - Caprin2 protein_coding processed_transcript MGP_AJ_T0102694.1 MGP_AJ_G0040436.1 mouse_genomes_project 6 55555650 55555945 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0000319.1 MGP_AJ_G0000263.1 mouse_genomes_project 6 68244181 68244759 + IG_V_pseudogene IG_V_pseudogene MGP_AJ_T0079605.1 MGP_AJ_G0031132.1 mouse_genomes_project 6 114117117 114295014 - MGP_AJ_P0079605 Tmcc1 protein_coding protein_coding MGP_AJ_T0079606.1 MGP_AJ_G0031132.1 mouse_genomes_project 6 114117122 114173397 - MGP_AJ_P0079606 Tmcc1 protein_coding protein_coding MGP_AJ_T0079607.1 MGP_AJ_G0031132.1 mouse_genomes_project 6 114119676 114208163 - MGP_AJ_P0079607 Tmcc1 protein_coding protein_coding MGP_AJ_T0079608.1 MGP_AJ_G0031132.1 mouse_genomes_project 6 114119850 114235831 - MGP_AJ_P0079608 Tmcc1 protein_coding protein_coding MGP_AJ_T0079609.1 MGP_AJ_G0031132.1 mouse_genomes_project 6 114120124 114235941 - MGP_AJ_P0079609 Tmcc1 protein_coding nonsense_mediated_decay MGP_AJ_T0079610.1 MGP_AJ_G0031132.1 mouse_genomes_project 6 114142420 114235414 - MGP_AJ_P0079610 Tmcc1 protein_coding nonsense_mediated_decay MGP_AJ_T0079611.1 MGP_AJ_G0031132.1 mouse_genomes_project 6 114153050 114157619 - Tmcc1 protein_coding retained_intron MGP_AJ_T0079612.1 MGP_AJ_G0031132.1 mouse_genomes_project 6 114205220 114210698 - Tmcc1 protein_coding retained_intron MGP_AJ_T0079613.1 MGP_AJ_G0031132.1 mouse_genomes_project 6 114233165 114273888 - MGP_AJ_P0079613 Tmcc1 protein_coding protein_coding MGP_AJ_T0079614.1 MGP_AJ_G0031132.1 mouse_genomes_project 6 114235030 114236633 - Tmcc1 protein_coding retained_intron MGP_AJ_T0008498.1 MGP_AJ_G0006886.1 mouse_genomes_project 6 1543310 1552066 - Gm20714 lincRNA lincRNA MGP_AJ_T0008499.1 MGP_AJ_G0006886.1 mouse_genomes_project 6 1543310 1543690 - Gm20714 lincRNA lincRNA MGP_AJ_T0008500.1 MGP_AJ_G0006886.1 mouse_genomes_project 6 1543312 1549157 - Gm20714 lincRNA lincRNA MGP_AJ_T0102710.1 MGP_AJ_G0040452.1 mouse_genomes_project 6 121766754 121767511 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0080158.1 MGP_AJ_G0031243.1 mouse_genomes_project 6 123327341 123343972 - MGP_AJ_P0080158 P3h3 protein_coding protein_coding MGP_AJ_T0080159.1 MGP_AJ_G0031243.1 mouse_genomes_project 6 123327458 123343949 - MGP_AJ_P0080159 P3h3 protein_coding nonsense_mediated_decay MGP_AJ_T0080160.1 MGP_AJ_G0031243.1 mouse_genomes_project 6 123327746 123328864 - P3h3 protein_coding retained_intron MGP_AJ_T0080161.1 MGP_AJ_G0031243.1 mouse_genomes_project 6 123331577 123337161 - P3h3 protein_coding retained_intron MGP_AJ_T0080162.1 MGP_AJ_G0031243.1 mouse_genomes_project 6 123332225 123341144 - P3h3 protein_coding retained_intron MGP_AJ_T0080163.1 MGP_AJ_G0031243.1 mouse_genomes_project 6 123332267 123341047 - P3h3 protein_coding retained_intron MGP_AJ_T0080164.1 MGP_AJ_G0031243.1 mouse_genomes_project 6 123340615 123341390 - P3h3 protein_coding retained_intron MGP_AJ_T0079804.1 MGP_AJ_G0031167.1 mouse_genomes_project 6 118059183 118062476 - Wnk1 protein_coding retained_intron MGP_AJ_T0079805.1 MGP_AJ_G0031167.1 mouse_genomes_project 6 118059183 118173240 - MGP_AJ_P0079805 Wnk1 protein_coding protein_coding MGP_AJ_T0079806.1 MGP_AJ_G0031167.1 mouse_genomes_project 6 118059185 118173223 - MGP_AJ_P0079806 Wnk1 protein_coding protein_coding MGP_AJ_T0079807.1 MGP_AJ_G0031167.1 mouse_genomes_project 6 118059185 118173223 - MGP_AJ_P0079807 Wnk1 protein_coding protein_coding MGP_AJ_T0079808.1 MGP_AJ_G0031167.1 mouse_genomes_project 6 118059835 118172227 - MGP_AJ_P0079808 Wnk1 protein_coding protein_coding MGP_AJ_T0079809.1 MGP_AJ_G0031167.1 mouse_genomes_project 6 118059835 118172227 - MGP_AJ_P0079809 Wnk1 protein_coding protein_coding MGP_AJ_T0079810.1 MGP_AJ_G0031167.1 mouse_genomes_project 6 118061793 118071645 - MGP_AJ_P0079810 Wnk1 protein_coding protein_coding MGP_AJ_T0079811.1 MGP_AJ_G0031167.1 mouse_genomes_project 6 118062339 118072845 - MGP_AJ_P0079811 Wnk1 protein_coding protein_coding MGP_AJ_T0079812.1 MGP_AJ_G0031167.1 mouse_genomes_project 6 118065047 118069525 - MGP_AJ_P0079812 Wnk1 protein_coding protein_coding MGP_AJ_T0079813.1 MGP_AJ_G0031167.1 mouse_genomes_project 6 118065047 118069524 - MGP_AJ_P0079813 Wnk1 protein_coding protein_coding MGP_AJ_T0079814.1 MGP_AJ_G0031167.1 mouse_genomes_project 6 118065982 118069032 - Wnk1 protein_coding retained_intron MGP_AJ_T0079815.1 MGP_AJ_G0031167.1 mouse_genomes_project 6 118072655 118083624 - MGP_AJ_P0079815 Wnk1 protein_coding protein_coding MGP_AJ_T0079816.1 MGP_AJ_G0031167.1 mouse_genomes_project 6 118072810 118083303 - MGP_AJ_P0079816 Wnk1 protein_coding nonsense_mediated_decay MGP_AJ_T0079817.1 MGP_AJ_G0031167.1 mouse_genomes_project 6 118072930 118075297 - Wnk1 protein_coding retained_intron MGP_AJ_T0079818.1 MGP_AJ_G0031167.1 mouse_genomes_project 6 118079526 118085352 - Wnk1 protein_coding retained_intron MGP_AJ_T0079819.1 MGP_AJ_G0031167.1 mouse_genomes_project 6 118085520 118087196 - Wnk1 protein_coding retained_intron MGP_AJ_T0079820.1 MGP_AJ_G0031167.1 mouse_genomes_project 6 118086848 118103854 - MGP_AJ_P0079820 Wnk1 protein_coding protein_coding MGP_AJ_T0079821.1 MGP_AJ_G0031167.1 mouse_genomes_project 6 118086855 118091368 - MGP_AJ_P0079821 Wnk1 protein_coding protein_coding MGP_AJ_T0079822.1 MGP_AJ_G0031167.1 mouse_genomes_project 6 118088066 118125338 - MGP_AJ_P0079822 Wnk1 protein_coding protein_coding MGP_AJ_T0079823.1 MGP_AJ_G0031167.1 mouse_genomes_project 6 118088847 118173175 - Wnk1 protein_coding retained_intron MGP_AJ_T0079824.1 MGP_AJ_G0031167.1 mouse_genomes_project 6 118088847 118125297 - Wnk1 protein_coding retained_intron MGP_AJ_T0079825.1 MGP_AJ_G0031167.1 mouse_genomes_project 6 118091293 118098121 - MGP_AJ_P0079825 Wnk1 protein_coding protein_coding MGP_AJ_T0079826.1 MGP_AJ_G0031167.1 mouse_genomes_project 6 118097498 118098924 - MGP_AJ_P0079826 Wnk1 protein_coding protein_coding MGP_AJ_T0079827.1 MGP_AJ_G0031167.1 mouse_genomes_project 6 118104744 118127700 - Wnk1 protein_coding processed_transcript MGP_AJ_T0079828.1 MGP_AJ_G0031167.1 mouse_genomes_project 6 118104755 118116642 - Wnk1 protein_coding processed_transcript MGP_AJ_T0079829.1 MGP_AJ_G0031167.1 mouse_genomes_project 6 118105937 118108257 - Wnk1 protein_coding retained_intron MGP_AJ_T0015439.1 MGP_AJ_G0013534.1 mouse_genomes_project 6 71003557 71003981 - processed_pseudogene processed_pseudogene MGP_AJ_T0079241.1 MGP_AJ_G0031065.1 mouse_genomes_project 6 104843663 104864011 - MGP_AJ_P0079241 Crbn protein_coding protein_coding MGP_AJ_T0079242.1 MGP_AJ_G0031065.1 mouse_genomes_project 6 104843663 104864002 - MGP_AJ_P0079242 Crbn protein_coding protein_coding MGP_AJ_T0079243.1 MGP_AJ_G0031065.1 mouse_genomes_project 6 104847406 104862970 - MGP_AJ_P0079243 Crbn protein_coding protein_coding MGP_AJ_T0079244.1 MGP_AJ_G0031065.1 mouse_genomes_project 6 104852684 104863998 - Crbn protein_coding retained_intron MGP_AJ_T0079245.1 MGP_AJ_G0031065.1 mouse_genomes_project 6 104861116 104864014 - Crbn protein_coding retained_intron MGP_AJ_T0002148.1 MGP_AJ_G0002060.1 mouse_genomes_project 6 126920103 126920849 + TEC TEC MGP_AJ_T0080597.1 MGP_AJ_G0031346.1 mouse_genomes_project 6 130217667 130223950 + MGP_AJ_P0080597 protein_coding protein_coding MGP_AJ_T0080598.1 MGP_AJ_G0031346.1 mouse_genomes_project 6 130217667 130285703 + MGP_AJ_P0080598 protein_coding protein_coding MGP_AJ_T0102687.1 MGP_AJ_G0040429.1 mouse_genomes_project 6 55063410 55064320 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0078908.1 MGP_AJ_G0030993.1 mouse_genomes_project 6 87929070 87944091 - MGP_AJ_P0078908 Vmn1r45 protein_coding protein_coding MGP_AJ_T0076475.1 MGP_AJ_G0030445.1 mouse_genomes_project 6 14343167 14475751 + St7 protein_coding retained_intron MGP_AJ_T0076476.1 MGP_AJ_G0030445.1 mouse_genomes_project 6 14344180 14595149 + MGP_AJ_P0076476 St7 protein_coding protein_coding MGP_AJ_T0076477.1 MGP_AJ_G0030445.1 mouse_genomes_project 6 14344227 14595149 + MGP_AJ_P0076477 St7 protein_coding protein_coding MGP_AJ_T0076478.1 MGP_AJ_G0030445.1 mouse_genomes_project 6 14344265 14510383 + MGP_AJ_P0076478 St7 protein_coding nonsense_mediated_decay MGP_AJ_T0076479.1 MGP_AJ_G0030445.1 mouse_genomes_project 6 14344265 14595152 + MGP_AJ_P0076479 St7 protein_coding nonsense_mediated_decay MGP_AJ_T0076480.1 MGP_AJ_G0030445.1 mouse_genomes_project 6 14344265 14595093 + MGP_AJ_P0076480 St7 protein_coding protein_coding MGP_AJ_T0076481.1 MGP_AJ_G0030445.1 mouse_genomes_project 6 14344265 14595093 + MGP_AJ_P0076481 St7 protein_coding nonsense_mediated_decay MGP_AJ_T0076482.1 MGP_AJ_G0030445.1 mouse_genomes_project 6 14344265 14595093 + MGP_AJ_P0076482 St7 protein_coding protein_coding MGP_AJ_T0076483.1 MGP_AJ_G0030445.1 mouse_genomes_project 6 14344400 14595093 + MGP_AJ_P0076483 St7 protein_coding protein_coding MGP_AJ_T0076484.1 MGP_AJ_G0030445.1 mouse_genomes_project 6 14395986 14595093 + MGP_AJ_P0076484 St7 protein_coding protein_coding MGP_AJ_T0076485.1 MGP_AJ_G0030445.1 mouse_genomes_project 6 14395986 14595093 + MGP_AJ_P0076485 St7 protein_coding protein_coding MGP_AJ_T0076486.1 MGP_AJ_G0030445.1 mouse_genomes_project 6 14402062 14559494 + St7 protein_coding processed_transcript MGP_AJ_T0076487.1 MGP_AJ_G0030445.1 mouse_genomes_project 6 14402062 14595152 + MGP_AJ_P0076487 St7 protein_coding protein_coding MGP_AJ_T0076488.1 MGP_AJ_G0030445.1 mouse_genomes_project 6 14402108 14595147 + MGP_AJ_P0076488 St7 protein_coding protein_coding MGP_AJ_T0076489.1 MGP_AJ_G0030445.1 mouse_genomes_project 6 14402184 14492118 + St7 protein_coding retained_intron MGP_AJ_T0076490.1 MGP_AJ_G0030445.1 mouse_genomes_project 6 14402221 14595149 + St7 protein_coding retained_intron MGP_AJ_T0076491.1 MGP_AJ_G0030445.1 mouse_genomes_project 6 14402284 14595128 + St7 protein_coding retained_intron MGP_AJ_T0076492.1 MGP_AJ_G0030445.1 mouse_genomes_project 6 14495935 14503860 + St7 protein_coding processed_transcript MGP_AJ_T0076493.1 MGP_AJ_G0030445.1 mouse_genomes_project 6 14495954 14557911 + St7 protein_coding processed_transcript MGP_AJ_T0076494.1 MGP_AJ_G0030445.1 mouse_genomes_project 6 14510338 14559480 + St7 protein_coding processed_transcript MGP_AJ_T0076495.1 MGP_AJ_G0030445.1 mouse_genomes_project 6 14558570 14595062 + St7 protein_coding processed_transcript MGP_AJ_T0015273.1 MGP_AJ_G0013368.1 mouse_genomes_project 6 18929145 18929647 - processed_pseudogene processed_pseudogene MGP_AJ_T0078119.1 MGP_AJ_G0030840.1 mouse_genomes_project 6 70039233 70067259 - MGP_AJ_P0078119 Usp39 protein_coding protein_coding MGP_AJ_T0078120.1 MGP_AJ_G0030840.1 mouse_genomes_project 6 70041855 70055597 - Usp39 protein_coding retained_intron MGP_AJ_T0078121.1 MGP_AJ_G0030840.1 mouse_genomes_project 6 70058488 70065199 - MGP_AJ_P0078121 Usp39 protein_coding nonsense_mediated_decay MGP_AJ_T0078307.1 MGP_AJ_G0030881.1 mouse_genomes_project 6 80844869 80848157 + MGP_AJ_P0078307 Aup1 protein_coding protein_coding MGP_AJ_T0078308.1 MGP_AJ_G0030881.1 mouse_genomes_project 6 80844994 80848035 + Aup1 protein_coding retained_intron MGP_AJ_T0078309.1 MGP_AJ_G0030881.1 mouse_genomes_project 6 80845062 80846734 + Aup1 protein_coding retained_intron MGP_AJ_T0078310.1 MGP_AJ_G0030881.1 mouse_genomes_project 6 80845077 80846704 + Aup1 protein_coding retained_intron MGP_AJ_T0078311.1 MGP_AJ_G0030881.1 mouse_genomes_project 6 80845079 80845518 + Aup1 protein_coding retained_intron MGP_AJ_T0078312.1 MGP_AJ_G0030881.1 mouse_genomes_project 6 80845079 80848027 + MGP_AJ_P0078312 Aup1 protein_coding nonsense_mediated_decay MGP_AJ_T0078313.1 MGP_AJ_G0030881.1 mouse_genomes_project 6 80845084 80846783 + MGP_AJ_P0078313 Aup1 protein_coding nonsense_mediated_decay MGP_AJ_T0078314.1 MGP_AJ_G0030881.1 mouse_genomes_project 6 80845086 80845864 + Aup1 protein_coding retained_intron MGP_AJ_T0078315.1 MGP_AJ_G0030881.1 mouse_genomes_project 6 80845096 80848031 + MGP_AJ_P0078315 Aup1 protein_coding nonsense_mediated_decay MGP_AJ_T0078316.1 MGP_AJ_G0030881.1 mouse_genomes_project 6 80845103 80846637 + Aup1 protein_coding retained_intron MGP_AJ_T0078317.1 MGP_AJ_G0030881.1 mouse_genomes_project 6 80845739 80846466 + Aup1 protein_coding retained_intron MGP_AJ_T0078318.1 MGP_AJ_G0030881.1 mouse_genomes_project 6 80846062 80846662 + Aup1 protein_coding retained_intron MGP_AJ_T0078319.1 MGP_AJ_G0030881.1 mouse_genomes_project 6 80846758 80847993 + Aup1 protein_coding retained_intron MGP_AJ_T0078320.1 MGP_AJ_G0030881.1 mouse_genomes_project 6 80846860 80847186 + Aup1 protein_coding retained_intron MGP_AJ_T0078321.1 MGP_AJ_G0030881.1 mouse_genomes_project 6 80847196 80847742 + Aup1 protein_coding retained_intron MGP_AJ_T0078322.1 MGP_AJ_G0030881.1 mouse_genomes_project 6 80847201 80848031 + Aup1 protein_coding retained_intron MGP_AJ_T0078323.1 MGP_AJ_G0030881.1 mouse_genomes_project 6 80847569 80848025 + Aup1 protein_coding retained_intron MGP_AJ_T0078672.1 MGP_AJ_G0030948.1 mouse_genomes_project 6 84598536 84639880 - MGP_AJ_P0078672 Gmcl1 protein_coding protein_coding MGP_AJ_T0078673.1 MGP_AJ_G0030948.1 mouse_genomes_project 6 84620986 84623731 - Gmcl1 protein_coding retained_intron MGP_AJ_T0078674.1 MGP_AJ_G0030948.1 mouse_genomes_project 6 84621070 84625166 - Gmcl1 protein_coding retained_intron MGP_AJ_T0078675.1 MGP_AJ_G0030948.1 mouse_genomes_project 6 84626770 84639737 - MGP_AJ_P0078675 Gmcl1 protein_coding protein_coding MGP_AJ_T0002025.1 MGP_AJ_G0001938.1 mouse_genomes_project 6 75418302 75421097 - TEC TEC MGP_AJ_T0015267.1 MGP_AJ_G0013362.1 mouse_genomes_project 6 15970547 15973212 - processed_pseudogene processed_pseudogene MGP_AJ_T0008770.1 MGP_AJ_G0007083.1 mouse_genomes_project 6 139921876 140009129 + Gm30524 lincRNA lincRNA MGP_AJ_T0008771.1 MGP_AJ_G0007083.1 mouse_genomes_project 6 139921902 140007429 + Gm30524 lincRNA lincRNA MGP_AJ_T0008683.1 MGP_AJ_G0007014.1 mouse_genomes_project 6 88491702 88493460 - Gm44117 lincRNA lincRNA MGP_AJ_T0077253.1 MGP_AJ_G0030610.1 mouse_genomes_project 6 38614003 38625428 + MGP_AJ_P0077253 Sval2 protein_coding protein_coding MGP_AJ_T0077254.1 MGP_AJ_G0030610.1 mouse_genomes_project 6 38621253 38625387 + MGP_AJ_P0077254 Sval2 protein_coding protein_coding MGP_AJ_T0077255.1 MGP_AJ_G0030610.1 mouse_genomes_project 6 38622806 38625387 + MGP_AJ_P0077255 Sval2 protein_coding protein_coding MGP_AJ_T0077256.1 MGP_AJ_G0030610.1 mouse_genomes_project 6 38624354 38625304 + Sval2 protein_coding retained_intron MGP_AJ_T0079379.1 MGP_AJ_G0031089.1 mouse_genomes_project 6 111455226 111465949 + MGP_AJ_P0079379 Arpc4 protein_coding protein_coding MGP_AJ_T0015677.1 MGP_AJ_G0013772.1 mouse_genomes_project 6 148043268 148043591 + processed_pseudogene processed_pseudogene MGP_AJ_T0078515.1 MGP_AJ_G0030917.1 mouse_genomes_project 6 82963997 82977226 - MGP_AJ_P0078515 Spr protein_coding nonsense_mediated_decay MGP_AJ_T0078516.1 MGP_AJ_G0030917.1 mouse_genomes_project 6 82972691 82977222 - MGP_AJ_P0078516 Spr protein_coding protein_coding MGP_AJ_T0078517.1 MGP_AJ_G0030917.1 mouse_genomes_project 6 82972693 82977226 - MGP_AJ_P0078517 Spr protein_coding protein_coding MGP_AJ_T0078518.1 MGP_AJ_G0030917.1 mouse_genomes_project 6 82972702 82977216 - MGP_AJ_P0078518 Spr protein_coding protein_coding MGP_AJ_T0018294.1 MGP_AJ_G0015619.1 mouse_genomes_project 6 93364796 93446264 - AY512915 processed_transcript antisense MGP_AJ_T0018295.1 MGP_AJ_G0015619.1 mouse_genomes_project 6 93385805 93446251 - AY512915 processed_transcript antisense MGP_AJ_T0018296.1 MGP_AJ_G0015619.1 mouse_genomes_project 6 93399712 93446266 - AY512915 processed_transcript lincRNA MGP_AJ_T0018297.1 MGP_AJ_G0015619.1 mouse_genomes_project 6 93421091 93446244 - AY512915 processed_transcript antisense MGP_AJ_T0018298.1 MGP_AJ_G0015619.1 mouse_genomes_project 6 93434891 93446250 - AY512915 processed_transcript processed_transcript MGP_AJ_T0076660.1 MGP_AJ_G0030487.1 mouse_genomes_project 6 25754550 25796514 - MGP_AJ_P0076660 Rbm28 protein_coding protein_coding MGP_AJ_T0076661.1 MGP_AJ_G0030487.1 mouse_genomes_project 6 25756240 25786954 - Rbm28 protein_coding retained_intron MGP_AJ_T0076662.1 MGP_AJ_G0030487.1 mouse_genomes_project 6 25756274 25762332 - MGP_AJ_P0076662 Rbm28 protein_coding protein_coding MGP_AJ_T0076663.1 MGP_AJ_G0030487.1 mouse_genomes_project 6 25758707 25796514 - MGP_AJ_P0076663 Rbm28 protein_coding unknown_likely_coding MGP_AJ_T0076664.1 MGP_AJ_G0030487.1 mouse_genomes_project 6 25768456 25784713 - Rbm28 protein_coding retained_intron MGP_AJ_T0076665.1 MGP_AJ_G0030487.1 mouse_genomes_project 6 25788542 25792069 - Rbm28 protein_coding retained_intron MGP_AJ_T0076666.1 MGP_AJ_G0030487.1 mouse_genomes_project 6 25789002 25791844 - Rbm28 protein_coding retained_intron MGP_AJ_T0002567.1 MGP_AJ_G0002467.1 mouse_genomes_project 6 38304275 38304325 + MGP_AJ_P0002567 Trbj2-1 TR_J_gene TR_J_gene MGP_AJ_T0077278.1 MGP_AJ_G0030619.1 mouse_genomes_project 6 39016373 39044345 + MGP_AJ_P0077278 Clcn1 protein_coding protein_coding MGP_AJ_T0077279.1 MGP_AJ_G0030619.1 mouse_genomes_project 6 39016455 39043867 + MGP_AJ_P0077279 Clcn1 protein_coding nonsense_mediated_decay MGP_AJ_T0077280.1 MGP_AJ_G0030619.1 mouse_genomes_project 6 39016544 39043918 + MGP_AJ_P0077280 Clcn1 protein_coding nonsense_mediated_decay MGP_AJ_T0077281.1 MGP_AJ_G0030619.1 mouse_genomes_project 6 39016544 39043867 + MGP_AJ_P0077281 Clcn1 protein_coding nonsense_mediated_decay MGP_AJ_T0077282.1 MGP_AJ_G0030619.1 mouse_genomes_project 6 39016544 39043867 + MGP_AJ_P0077282 Clcn1 protein_coding nonsense_mediated_decay MGP_AJ_T0077283.1 MGP_AJ_G0030619.1 mouse_genomes_project 6 39016544 39043867 + MGP_AJ_P0077283 Clcn1 protein_coding protein_coding MGP_AJ_T0077284.1 MGP_AJ_G0030619.1 mouse_genomes_project 6 39016554 39043646 + MGP_AJ_P0077284 Clcn1 protein_coding nonsense_mediated_decay MGP_AJ_T0077285.1 MGP_AJ_G0030619.1 mouse_genomes_project 6 39028588 39045445 + Clcn1 protein_coding processed_transcript MGP_AJ_T0077286.1 MGP_AJ_G0030619.1 mouse_genomes_project 6 39039833 39042753 + MGP_AJ_P0077286 Clcn1 protein_coding nonsense_mediated_decay MGP_AJ_T0077287.1 MGP_AJ_G0030619.1 mouse_genomes_project 6 39042180 39043033 + Clcn1 protein_coding retained_intron MGP_AJ_T0008595.1 MGP_AJ_G0006947.1 mouse_genomes_project 6 45651133 45657429 + Gm7932 lincRNA lincRNA MGP_AJ_T0008596.1 MGP_AJ_G0006947.1 mouse_genomes_project 6 45651228 45655790 + Gm7932 lincRNA lincRNA MGP_AJ_T0080080.1 MGP_AJ_G0031231.1 mouse_genomes_project 6 123202568 123204103 + Phb2 protein_coding retained_intron MGP_AJ_T0080081.1 MGP_AJ_G0031231.1 mouse_genomes_project 6 123202568 123203301 + Phb2 protein_coding retained_intron MGP_AJ_T0080082.1 MGP_AJ_G0031231.1 mouse_genomes_project 6 123202568 123207184 + Phb2 protein_coding retained_intron MGP_AJ_T0080083.1 MGP_AJ_G0031231.1 mouse_genomes_project 6 123202568 123207184 + MGP_AJ_P0080083 Phb2 protein_coding protein_coding MGP_AJ_T0080084.1 MGP_AJ_G0031231.1 mouse_genomes_project 6 123202998 123205033 + MGP_AJ_P0080084 Phb2 protein_coding protein_coding MGP_AJ_T0080085.1 MGP_AJ_G0031231.1 mouse_genomes_project 6 123203354 123206874 + MGP_AJ_P0080085 Phb2 protein_coding protein_coding MGP_AJ_T0080086.1 MGP_AJ_G0031231.1 mouse_genomes_project 6 123205581 123207184 + Phb2 protein_coding retained_intron MGP_AJ_T0080087.1 MGP_AJ_G0031231.1 mouse_genomes_project 6 123205596 123206773 + Phb2 protein_coding processed_transcript MGP_AJ_T0015310.1 MGP_AJ_G0013405.1 mouse_genomes_project 6 38060219 38060782 - processed_pseudogene processed_pseudogene MGP_AJ_T0015500.1 MGP_AJ_G0013595.1 mouse_genomes_project 6 95986352 95986604 - processed_pseudogene processed_pseudogene MGP_AJ_T0000048.1 MGP_AJ_G0000039.1 mouse_genomes_project 6 68427785 68427823 + MGP_AJ_P0000048 Igkj1 IG_J_gene IG_J_gene MGP_AJ_T0008775.1 MGP_AJ_G0007087.1 mouse_genomes_project 6 142130781 142176947 - Gm31108 lincRNA lincRNA MGP_AJ_T0101335.1 MGP_AJ_G0039301.1 mouse_genomes_project 6 39004528 39004606 + Gm25108 snoRNA snoRNA MGP_AJ_T0002189.1 MGP_AJ_G0002101.1 mouse_genomes_project 6 148287060 148291000 - TEC TEC MGP_AJ_T0077460.1 MGP_AJ_G0030669.1 mouse_genomes_project 6 45379852 45380956 + MGP_AJ_P0077460 protein_coding protein_coding MGP_AJ_T0077461.1 MGP_AJ_G0030669.1 mouse_genomes_project 6 45379995 45380890 + protein_coding retained_intron MGP_AJ_T0079631.1 MGP_AJ_G0031136.1 mouse_genomes_project 6 114439810 114507446 + MGP_AJ_P0079631 protein_coding protein_coding MGP_AJ_T0079632.1 MGP_AJ_G0031136.1 mouse_genomes_project 6 114439816 114510633 + MGP_AJ_P0079632 protein_coding protein_coding MGP_AJ_T0079633.1 MGP_AJ_G0031136.1 mouse_genomes_project 6 114439820 114506843 + MGP_AJ_P0079633 protein_coding protein_coding MGP_AJ_T0079634.1 MGP_AJ_G0031136.1 mouse_genomes_project 6 114439840 114477423 + MGP_AJ_P0079634 protein_coding protein_coding MGP_AJ_T0079635.1 MGP_AJ_G0031136.1 mouse_genomes_project 6 114451099 114454204 + protein_coding retained_intron MGP_AJ_T0079636.1 MGP_AJ_G0031136.1 mouse_genomes_project 6 114451604 114504518 + MGP_AJ_P0079636 protein_coding protein_coding MGP_AJ_T0079637.1 MGP_AJ_G0031136.1 mouse_genomes_project 6 114451645 114477484 + MGP_AJ_P0079637 protein_coding protein_coding MGP_AJ_T0079638.1 MGP_AJ_G0031136.1 mouse_genomes_project 6 114477313 114502521 + protein_coding retained_intron MGP_AJ_T0079639.1 MGP_AJ_G0031136.1 mouse_genomes_project 6 114487670 114507314 + MGP_AJ_P0079639 protein_coding protein_coding MGP_AJ_T0079640.1 MGP_AJ_G0031136.1 mouse_genomes_project 6 114487696 114507224 + protein_coding retained_intron MGP_AJ_T0079641.1 MGP_AJ_G0031136.1 mouse_genomes_project 6 114493643 114502947 + protein_coding processed_transcript MGP_AJ_T0079642.1 MGP_AJ_G0031136.1 mouse_genomes_project 6 114504081 114506872 + protein_coding processed_transcript MGP_AJ_T0079643.1 MGP_AJ_G0031136.1 mouse_genomes_project 6 114506266 114507395 + protein_coding processed_transcript MGP_AJ_T0008558.1 MGP_AJ_G0006922.1 mouse_genomes_project 6 28339243 28350253 + lincRNA lincRNA MGP_AJ_T0001957.1 MGP_AJ_G0001870.1 mouse_genomes_project 6 40061941 40062569 + TEC TEC MGP_AJ_T0100116.1 MGP_AJ_G0038082.1 mouse_genomes_project 6 118524099 118524205 - Gm24592 snRNA snRNA MGP_AJ_T0079588.1 MGP_AJ_G0031129.1 mouse_genomes_project 6 114028194 114036483 + MGP_AJ_P0079588 Rho protein_coding protein_coding MGP_AJ_T0079589.1 MGP_AJ_G0031129.1 mouse_genomes_project 6 114028371 114030545 + Rho protein_coding retained_intron MGP_AJ_T0079590.1 MGP_AJ_G0031129.1 mouse_genomes_project 6 114029002 114033154 + MGP_AJ_P0079590 Rho protein_coding protein_coding MGP_AJ_T0079591.1 MGP_AJ_G0031129.1 mouse_genomes_project 6 114030787 114033399 + MGP_AJ_P0079591 Rho protein_coding protein_coding MGP_AJ_T0079592.1 MGP_AJ_G0031129.1 mouse_genomes_project 6 114030818 114033519 + MGP_AJ_P0079592 Rho protein_coding nonsense_mediated_decay MGP_AJ_T0079593.1 MGP_AJ_G0031129.1 mouse_genomes_project 6 114031184 114032491 + Rho protein_coding retained_intron MGP_AJ_T0079594.1 MGP_AJ_G0031129.1 mouse_genomes_project 6 114031643 114032675 + Rho protein_coding retained_intron MGP_AJ_T0010801.1 MGP_AJ_G0008923.1 mouse_genomes_project 6 116195848 116195920 + Mir7044 miRNA miRNA MGP_AJ_T0005115.1 MGP_AJ_G0004364.1 mouse_genomes_project 6 143521458 143541539 + Sox5os2 antisense antisense MGP_AJ_T0001970.1 MGP_AJ_G0001883.1 mouse_genomes_project 6 42655694 42658048 + TEC TEC MGP_AJ_T0076217.1 MGP_AJ_G0030395.1 mouse_genomes_project 6 404201 483364 - MGP_AJ_P0076217 Calcr protein_coding protein_coding MGP_AJ_T0076218.1 MGP_AJ_G0030395.1 mouse_genomes_project 6 404241 484448 - MGP_AJ_P0076218 Calcr protein_coding protein_coding MGP_AJ_T0076219.1 MGP_AJ_G0030395.1 mouse_genomes_project 6 404254 484392 - MGP_AJ_P0076219 Calcr protein_coding protein_coding MGP_AJ_T0076220.1 MGP_AJ_G0030395.1 mouse_genomes_project 6 405343 472597 - MGP_AJ_P0076220 Calcr protein_coding protein_coding MGP_AJ_T0076221.1 MGP_AJ_G0030395.1 mouse_genomes_project 6 405343 472597 - MGP_AJ_P0076221 Calcr protein_coding protein_coding MGP_AJ_T0005064.1 MGP_AJ_G0004319.1 mouse_genomes_project 6 112086656 112135454 + Gm15083 antisense antisense MGP_AJ_T0078992.1 MGP_AJ_G0031016.1 mouse_genomes_project 6 89526366 89541129 + MGP_AJ_P0078992 Tmem43 protein_coding protein_coding MGP_AJ_T0078993.1 MGP_AJ_G0031016.1 mouse_genomes_project 6 89526390 89530299 + Tmem43 protein_coding retained_intron MGP_AJ_T0078994.1 MGP_AJ_G0031016.1 mouse_genomes_project 6 89526414 89527126 + Tmem43 protein_coding processed_transcript MGP_AJ_T0078995.1 MGP_AJ_G0031016.1 mouse_genomes_project 6 89526422 89531806 + Tmem43 protein_coding retained_intron MGP_AJ_T0078996.1 MGP_AJ_G0031016.1 mouse_genomes_project 6 89529265 89530923 + Tmem43 protein_coding processed_transcript MGP_AJ_T0079663.1 MGP_AJ_G0031144.1 mouse_genomes_project 6 114749066 114793366 - MGP_AJ_P0079663 Rassf4 protein_coding protein_coding MGP_AJ_T0079664.1 MGP_AJ_G0031144.1 mouse_genomes_project 6 114755282 114793223 - MGP_AJ_P0079664 Rassf4 protein_coding protein_coding MGP_AJ_T0079665.1 MGP_AJ_G0031144.1 mouse_genomes_project 6 114755546 114757061 - Rassf4 protein_coding processed_transcript MGP_AJ_T0079666.1 MGP_AJ_G0031144.1 mouse_genomes_project 6 114758983 114793203 - Rassf4 protein_coding retained_intron MGP_AJ_T0079667.1 MGP_AJ_G0031144.1 mouse_genomes_project 6 114761296 114763995 - Rassf4 protein_coding retained_intron MGP_AJ_T0079668.1 MGP_AJ_G0031144.1 mouse_genomes_project 6 114761961 114793185 - MGP_AJ_P0079668 Rassf4 protein_coding protein_coding MGP_AJ_T0079669.1 MGP_AJ_G0031144.1 mouse_genomes_project 6 114762032 114793212 - MGP_AJ_P0079669 Rassf4 protein_coding protein_coding MGP_AJ_T0000289.1 MGP_AJ_G0000233.1 mouse_genomes_project 6 65889057 65889516 + IG_V_pseudogene IG_V_pseudogene MGP_AJ_T0015505.1 MGP_AJ_G0013600.1 mouse_genomes_project 6 98329969 98386227 - processed_pseudogene processed_pseudogene MGP_AJ_T0100110.1 MGP_AJ_G0038076.1 mouse_genomes_project 6 110578731 110578834 + Gm27944 snRNA snRNA MGP_AJ_T0001936.1 MGP_AJ_G0001849.1 mouse_genomes_project 6 24850829 24854762 - TEC TEC MGP_AJ_T0002171.1 MGP_AJ_G0002083.1 mouse_genomes_project 6 140313712 140317547 + TEC TEC MGP_AJ_T0080602.1 MGP_AJ_G0031350.1 mouse_genomes_project 6 130370684 130371593 - MGP_AJ_P0080602 Tas2r104 protein_coding protein_coding MGP_AJ_T0015399.1 MGP_AJ_G0013494.1 mouse_genomes_project 6 63476079 63476305 + processed_pseudogene processed_pseudogene MGP_AJ_T0002057.1 MGP_AJ_G0001970.1 mouse_genomes_project 6 85252603 85254752 - TEC TEC MGP_AJ_T0077040.1 MGP_AJ_G0030551.1 mouse_genomes_project 6 34577598 34655702 + Trim24 protein_coding retained_intron MGP_AJ_T0077041.1 MGP_AJ_G0030551.1 mouse_genomes_project 6 34577598 34627933 + Trim24 protein_coding retained_intron MGP_AJ_T0077042.1 MGP_AJ_G0030551.1 mouse_genomes_project 6 34577598 34675043 + MGP_AJ_P0077042 Trim24 protein_coding protein_coding MGP_AJ_T0077043.1 MGP_AJ_G0030551.1 mouse_genomes_project 6 34577598 34675043 + MGP_AJ_P0077043 Trim24 protein_coding protein_coding MGP_AJ_T0077044.1 MGP_AJ_G0030551.1 mouse_genomes_project 6 34583117 34637894 + Trim24 protein_coding processed_transcript MGP_AJ_T0077045.1 MGP_AJ_G0030551.1 mouse_genomes_project 6 34607027 34674679 + MGP_AJ_P0077045 Trim24 protein_coding protein_coding MGP_AJ_T0077046.1 MGP_AJ_G0030551.1 mouse_genomes_project 6 34621761 34634428 + Trim24 protein_coding retained_intron MGP_AJ_T0077047.1 MGP_AJ_G0030551.1 mouse_genomes_project 6 34657461 34662374 + Trim24 protein_coding retained_intron MGP_AJ_T0010803.1 MGP_AJ_G0008925.1 mouse_genomes_project 6 118168812 118168896 - Mir706 miRNA miRNA MGP_AJ_T0002691.1 MGP_AJ_G0002568.1 mouse_genomes_project 6 38319126 38319807 - MGP_AJ_P0002691 Trbv31 TR_V_gene TR_V_gene MGP_AJ_T0002692.1 MGP_AJ_G0002568.1 mouse_genomes_project 6 38319128 38319888 - MGP_AJ_P0002692 Trbv31 TR_V_gene TR_V_gene MGP_AJ_T0011658.1 MGP_AJ_G0009780.1 mouse_genomes_project 6 81516182 81516376 + Gm27893 misc_RNA misc_RNA MGP_AJ_T0015535.1 MGP_AJ_G0013630.1 mouse_genomes_project 6 110460067 110460535 - processed_pseudogene processed_pseudogene MGP_AJ_T0100081.1 MGP_AJ_G0038047.1 mouse_genomes_project 6 29783234 29783338 - Gm22321 snRNA snRNA MGP_AJ_T0079903.1 MGP_AJ_G0031182.1 mouse_genomes_project 6 119337620 119350185 + MGP_AJ_P0079903 Pex26 protein_coding protein_coding MGP_AJ_T0079904.1 MGP_AJ_G0031182.1 mouse_genomes_project 6 119337620 119350192 + MGP_AJ_P0079904 Pex26 protein_coding protein_coding MGP_AJ_T0079905.1 MGP_AJ_G0031182.1 mouse_genomes_project 6 119337755 119341395 + MGP_AJ_P0079905 Pex26 protein_coding protein_coding MGP_AJ_T0079906.1 MGP_AJ_G0031182.1 mouse_genomes_project 6 119337842 119350185 + MGP_AJ_P0079906 Pex26 protein_coding protein_coding MGP_AJ_T0079907.1 MGP_AJ_G0031182.1 mouse_genomes_project 6 119337851 119341035 + Pex26 protein_coding retained_intron MGP_AJ_T0079908.1 MGP_AJ_G0031182.1 mouse_genomes_project 6 119337851 119352811 + MGP_AJ_P0079908 Pex26 protein_coding nonsense_mediated_decay MGP_AJ_T0078533.1 MGP_AJ_G0030921.1 mouse_genomes_project 6 83291824 83297320 + MGP_AJ_P0078533 Noto protein_coding protein_coding MGP_AJ_T0078534.1 MGP_AJ_G0030921.1 mouse_genomes_project 6 83292006 83296659 + MGP_AJ_P0078534 Noto protein_coding protein_coding MGP_AJ_T0080534.1 MGP_AJ_G0031323.1 mouse_genomes_project 6 128152899 128160986 + MGP_AJ_P0080534 Klre1 protein_coding protein_coding MGP_AJ_T0080535.1 MGP_AJ_G0031323.1 mouse_genomes_project 6 128153245 128160936 + MGP_AJ_P0080535 Klre1 protein_coding nonsense_mediated_decay MGP_AJ_T0080536.1 MGP_AJ_G0031323.1 mouse_genomes_project 6 128158405 128160983 + Klre1 protein_coding retained_intron MGP_AJ_T0102668.1 MGP_AJ_G0040410.1 mouse_genomes_project 6 37774822 37775464 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0081238.1 MGP_AJ_G0031487.1 mouse_genomes_project 6 148427039 148437488 + Bicd1 protein_coding retained_intron MGP_AJ_T0081239.1 MGP_AJ_G0031487.1 mouse_genomes_project 6 148427137 148585356 + MGP_AJ_P0081239 Bicd1 protein_coding protein_coding MGP_AJ_T0081240.1 MGP_AJ_G0031487.1 mouse_genomes_project 6 148427169 148579846 + MGP_AJ_P0081240 Bicd1 protein_coding protein_coding MGP_AJ_T0081241.1 MGP_AJ_G0031487.1 mouse_genomes_project 6 148427222 148526084 + Bicd1 protein_coding retained_intron MGP_AJ_T0081242.1 MGP_AJ_G0031487.1 mouse_genomes_project 6 148427582 148578746 + MGP_AJ_P0081242 Bicd1 protein_coding nonsense_mediated_decay MGP_AJ_T0081243.1 MGP_AJ_G0031487.1 mouse_genomes_project 6 148427582 148578746 + MGP_AJ_P0081243 Bicd1 protein_coding protein_coding MGP_AJ_T0081244.1 MGP_AJ_G0031487.1 mouse_genomes_project 6 148536181 148541668 + Bicd1 protein_coding retained_intron MGP_AJ_T0081245.1 MGP_AJ_G0031487.1 mouse_genomes_project 6 148539291 148542791 + MGP_AJ_P0081245 Bicd1 protein_coding protein_coding MGP_AJ_T0081246.1 MGP_AJ_G0031487.1 mouse_genomes_project 6 148567896 148580884 + Bicd1 protein_coding retained_intron MGP_AJ_T0008748.1 MGP_AJ_G0007071.1 mouse_genomes_project 6 127426315 127429290 + Gm26656 lincRNA lincRNA MGP_AJ_T0008689.1 MGP_AJ_G0007019.1 mouse_genomes_project 6 89493586 89494355 + 1810044D09Rik lincRNA lincRNA MGP_AJ_T0002180.1 MGP_AJ_G0002092.1 mouse_genomes_project 6 145774424 145775668 + TEC TEC MGP_AJ_T0077261.1 MGP_AJ_G0030614.1 mouse_genomes_project 6 38872696 38873656 + MGP_AJ_P0077261 Tas2r139 protein_coding protein_coding MGP_AJ_T0000285.1 MGP_AJ_G0000229.1 mouse_genomes_project 6 65635549 65636344 + IG_V_pseudogene IG_V_pseudogene MGP_AJ_T0005079.1 MGP_AJ_G0004334.1 mouse_genomes_project 6 123491595 123532398 - Gm43989 antisense antisense MGP_AJ_T0079067.1 MGP_AJ_G0031032.1 mouse_genomes_project 6 91763931 92385679 - MGP_AJ_P0079067 Magi1 protein_coding protein_coding MGP_AJ_T0079068.1 MGP_AJ_G0031032.1 mouse_genomes_project 6 91763931 92385084 - MGP_AJ_P0079068 Magi1 protein_coding protein_coding MGP_AJ_T0079069.1 MGP_AJ_G0031032.1 mouse_genomes_project 6 91763931 92385084 - MGP_AJ_P0079069 Magi1 protein_coding protein_coding MGP_AJ_T0079070.1 MGP_AJ_G0031032.1 mouse_genomes_project 6 91766511 92006973 - MGP_AJ_P0079070 Magi1 protein_coding protein_coding MGP_AJ_T0079071.1 MGP_AJ_G0031032.1 mouse_genomes_project 6 91766831 92385084 - MGP_AJ_P0079071 Magi1 protein_coding protein_coding MGP_AJ_T0079072.1 MGP_AJ_G0031032.1 mouse_genomes_project 6 91769954 92006837 - MGP_AJ_P0079072 Magi1 protein_coding protein_coding MGP_AJ_T0079073.1 MGP_AJ_G0031032.1 mouse_genomes_project 6 91770543 92006244 - MGP_AJ_P0079073 Magi1 protein_coding nonsense_mediated_decay MGP_AJ_T0079074.1 MGP_AJ_G0031032.1 mouse_genomes_project 6 91771486 92385657 - MGP_AJ_P0079074 Magi1 protein_coding protein_coding MGP_AJ_T0079075.1 MGP_AJ_G0031032.1 mouse_genomes_project 6 91863131 92005786 - MGP_AJ_P0079075 Magi1 protein_coding protein_coding MGP_AJ_T0079076.1 MGP_AJ_G0031032.1 mouse_genomes_project 6 91874988 91883228 - MGP_AJ_P0079076 Magi1 protein_coding protein_coding MGP_AJ_T0079077.1 MGP_AJ_G0031032.1 mouse_genomes_project 6 92233232 92384787 - Magi1 protein_coding processed_transcript MGP_AJ_T0002063.1 MGP_AJ_G0001976.1 mouse_genomes_project 6 85914814 85918353 + TEC TEC MGP_AJ_T0015349.1 MGP_AJ_G0013444.1 mouse_genomes_project 6 48966570 48966839 - processed_pseudogene processed_pseudogene MGP_AJ_T0102724.1 MGP_AJ_G0040465.1 mouse_genomes_project 6 129804139 129805878 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0015322.1 MGP_AJ_G0013417.1 mouse_genomes_project 6 41713526 41714229 + processed_pseudogene processed_pseudogene MGP_AJ_T0080374.1 MGP_AJ_G0031281.1 mouse_genomes_project 6 125539531 125552111 + MGP_AJ_P0080374 Fgf6 protein_coding protein_coding MGP_AJ_T0015443.1 MGP_AJ_G0013538.1 mouse_genomes_project 6 72883049 72884032 + processed_pseudogene processed_pseudogene MGP_AJ_T0005016.1 MGP_AJ_G0004288.1 mouse_genomes_project 6 85578212 85584293 + Gm44097 antisense antisense MGP_AJ_T0008520.1 MGP_AJ_G0006897.1 mouse_genomes_project 6 10096736 10099396 + 1700016P04Rik lincRNA lincRNA MGP_AJ_T0002144.1 MGP_AJ_G0002056.1 mouse_genomes_project 6 126299855 126302104 - TEC TEC MGP_AJ_T0078249.1 MGP_AJ_G0030869.1 mouse_genomes_project 6 77759355 78555040 + MGP_AJ_P0078249 Lrrtm4 protein_coding protein_coding MGP_AJ_T0078250.1 MGP_AJ_G0030869.1 mouse_genomes_project 6 77759366 77762206 + MGP_AJ_P0078250 Lrrtm4 protein_coding protein_coding MGP_AJ_T0078251.1 MGP_AJ_G0030869.1 mouse_genomes_project 6 77759396 78554218 + MGP_AJ_P0078251 Lrrtm4 protein_coding protein_coding MGP_AJ_T0078252.1 MGP_AJ_G0030869.1 mouse_genomes_project 6 77759396 77765373 + MGP_AJ_P0078252 Lrrtm4 protein_coding protein_coding MGP_AJ_T0078253.1 MGP_AJ_G0030869.1 mouse_genomes_project 6 77759489 78555038 + MGP_AJ_P0078253 Lrrtm4 protein_coding protein_coding MGP_AJ_T0078254.1 MGP_AJ_G0030869.1 mouse_genomes_project 6 77759526 77766359 + MGP_AJ_P0078254 Lrrtm4 protein_coding protein_coding MGP_AJ_T0078255.1 MGP_AJ_G0030869.1 mouse_genomes_project 6 77759884 77762373 + MGP_AJ_P0078255 Lrrtm4 protein_coding protein_coding MGP_AJ_T0078256.1 MGP_AJ_G0030869.1 mouse_genomes_project 6 77760094 77765381 + MGP_AJ_P0078256 Lrrtm4 protein_coding protein_coding MGP_AJ_T0010789.1 MGP_AJ_G0008911.1 mouse_genomes_project 6 97568779 97568891 - Gm22328 miRNA miRNA MGP_AJ_T0077832.1 MGP_AJ_G0030764.1 mouse_genomes_project 6 54145799 54146699 + MGP_AJ_P0077832 Vmn1r15 protein_coding protein_coding MGP_AJ_T0078365.1 MGP_AJ_G0030893.1 mouse_genomes_project 6 80941677 80948701 - MGP_AJ_P0078365 Wdr54 protein_coding protein_coding MGP_AJ_T0078367.1 MGP_AJ_G0030893.1 mouse_genomes_project 6 80945008 80948524 - Wdr54 protein_coding retained_intron MGP_AJ_T0078368.1 MGP_AJ_G0030893.1 mouse_genomes_project 6 80945012 80948669 - Wdr54 protein_coding retained_intron MGP_AJ_T0078369.1 MGP_AJ_G0030893.1 mouse_genomes_project 6 80945584 80948569 - Wdr54 protein_coding processed_transcript MGP_AJ_T0078370.1 MGP_AJ_G0030893.1 mouse_genomes_project 6 80946826 80948701 - MGP_AJ_P0078370 Wdr54 protein_coding protein_coding MGP_AJ_T0078371.1 MGP_AJ_G0030893.1 mouse_genomes_project 6 80947484 80948683 - Wdr54 protein_coding processed_transcript MGP_AJ_T0000196.1 MGP_AJ_G0000147.1 mouse_genomes_project 6 67632317 67632897 - MGP_AJ_P0000196 Igkv6-32 IG_V_gene IG_V_gene MGP_AJ_T0001974.1 MGP_AJ_G0001887.1 mouse_genomes_project 6 42830052 42832579 + TEC TEC MGP_AJ_T0015234.1 MGP_AJ_G0013329.1 mouse_genomes_project 6 3414598 3417434 - processed_pseudogene processed_pseudogene MGP_AJ_T0077611.1 MGP_AJ_G0030705.1 mouse_genomes_project 6 48294981 48299560 + Cbx3 protein_coding retained_intron MGP_AJ_T0077612.1 MGP_AJ_G0030705.1 mouse_genomes_project 6 48294995 48296379 + Cbx3 protein_coding retained_intron MGP_AJ_T0077613.1 MGP_AJ_G0030705.1 mouse_genomes_project 6 48295064 48305189 + MGP_AJ_P0077613 Cbx3 protein_coding protein_coding MGP_AJ_T0077614.1 MGP_AJ_G0030705.1 mouse_genomes_project 6 48301911 48306972 + Cbx3 protein_coding retained_intron MGP_AJ_T0008747.1 MGP_AJ_G0007070.1 mouse_genomes_project 6 127426315 127429290 - Gm44067 lincRNA lincRNA MGP_AJ_T0076827.1 MGP_AJ_G0030511.1 mouse_genomes_project 6 27178084 27188503 + MGP_AJ_P0076827 Ssmem1 protein_coding protein_coding MGP_AJ_T0076828.1 MGP_AJ_G0030511.1 mouse_genomes_project 6 27180521 27188504 + MGP_AJ_P0076828 Ssmem1 protein_coding protein_coding MGP_AJ_T0076829.1 MGP_AJ_G0030511.1 mouse_genomes_project 6 27181933 27187794 + MGP_AJ_P0076829 Ssmem1 protein_coding protein_coding MGP_AJ_T0002671.1 MGP_AJ_G0002553.1 mouse_genomes_project 6 37870441 37870903 + MGP_AJ_P0002671 Trbv13-1 TR_V_gene TR_V_gene MGP_AJ_T0002672.1 MGP_AJ_G0002553.1 mouse_genomes_project 6 37870470 37870903 + MGP_AJ_P0002672 Trbv13-1 TR_V_gene TR_V_gene MGP_AJ_T0002073.1 MGP_AJ_G0001986.1 mouse_genomes_project 6 87340707 87342130 + TEC TEC MGP_AJ_T0100125.1 MGP_AJ_G0038091.1 mouse_genomes_project 6 128847533 128847607 + Gm22621 snRNA snRNA MGP_AJ_T0100071.1 MGP_AJ_G0038037.1 mouse_genomes_project 6 7529220 7529309 - Gm26058 snRNA snRNA MGP_AJ_T0078447.1 MGP_AJ_G0030909.1 mouse_genomes_project 6 81573653 81580956 - MGP_AJ_P0078447 Tex261 protein_coding protein_coding MGP_AJ_T0078448.1 MGP_AJ_G0030909.1 mouse_genomes_project 6 81575179 81580933 - Tex261 protein_coding retained_intron MGP_AJ_T0078449.1 MGP_AJ_G0030909.1 mouse_genomes_project 6 81575953 81577241 - Tex261 protein_coding retained_intron MGP_AJ_T0078450.1 MGP_AJ_G0030909.1 mouse_genomes_project 6 81578372 81580901 - Tex261 protein_coding retained_intron MGP_AJ_T0079928.1 MGP_AJ_G0031187.1 mouse_genomes_project 6 119529383 119635763 - MGP_AJ_P0079928 Iqsec3 protein_coding nonsense_mediated_decay MGP_AJ_T0079929.1 MGP_AJ_G0031187.1 mouse_genomes_project 6 119529383 119635721 - MGP_AJ_P0079929 Iqsec3 protein_coding nonsense_mediated_decay MGP_AJ_T0079930.1 MGP_AJ_G0031187.1 mouse_genomes_project 6 119529383 119635776 - MGP_AJ_P0079930 Iqsec3 protein_coding protein_coding MGP_AJ_T0079931.1 MGP_AJ_G0031187.1 mouse_genomes_project 6 119566488 119635776 - MGP_AJ_P0079931 Iqsec3 protein_coding protein_coding MGP_AJ_T0002137.1 MGP_AJ_G0002049.1 mouse_genomes_project 6 123207880 123208178 - TEC TEC MGP_AJ_T0077880.1 MGP_AJ_G0030785.1 mouse_genomes_project 6 55928508 55940770 + MGP_AJ_P0077880 Herc3 protein_coding protein_coding MGP_AJ_T0077881.1 MGP_AJ_G0030785.1 mouse_genomes_project 6 55928546 55940756 + MGP_AJ_P0077881 Herc3 protein_coding protein_coding MGP_AJ_T0077882.1 MGP_AJ_G0030785.1 mouse_genomes_project 6 55928567 55951833 + MGP_AJ_P0077882 Herc3 protein_coding protein_coding MGP_AJ_T0077883.1 MGP_AJ_G0030785.1 mouse_genomes_project 6 55928791 55951837 + MGP_AJ_P0077883 Herc3 protein_coding protein_coding MGP_AJ_T0077884.1 MGP_AJ_G0030785.1 mouse_genomes_project 6 55928904 56004210 + MGP_AJ_P0077884 Herc3 protein_coding protein_coding MGP_AJ_T0077885.1 MGP_AJ_G0030785.1 mouse_genomes_project 6 55930743 56021208 + MGP_AJ_P0077885 Herc3 protein_coding protein_coding MGP_AJ_T0077886.1 MGP_AJ_G0030785.1 mouse_genomes_project 6 55959790 55970826 + Herc3 protein_coding retained_intron MGP_AJ_T0077887.1 MGP_AJ_G0030785.1 mouse_genomes_project 6 55968735 55970923 + Herc3 protein_coding processed_transcript MGP_AJ_T0077888.1 MGP_AJ_G0030785.1 mouse_genomes_project 6 55971423 55972123 + Herc3 protein_coding processed_transcript MGP_AJ_T0077889.1 MGP_AJ_G0030785.1 mouse_genomes_project 6 55987175 56002680 + MGP_AJ_P0077889 Herc3 protein_coding protein_coding MGP_AJ_T0077890.1 MGP_AJ_G0030785.1 mouse_genomes_project 6 56001876 56004638 + Herc3 protein_coding retained_intron MGP_AJ_T0077893.1 MGP_AJ_G0030785.1 mouse_genomes_project 6 56007390 56017633 + Herc3 protein_coding processed_transcript MGP_AJ_T0077894.1 MGP_AJ_G0030785.1 mouse_genomes_project 6 56009864 56021210 + MGP_AJ_P0077894 Herc3 protein_coding unknown_likely_coding MGP_AJ_T0001923.1 MGP_AJ_G0001836.1 mouse_genomes_project 6 12482472 12484171 + TEC TEC MGP_AJ_T0002126.1 MGP_AJ_G0002039.1 mouse_genomes_project 6 114490581 114491517 + TEC TEC MGP_AJ_T0001966.1 MGP_AJ_G0001879.1 mouse_genomes_project 6 42083618 42085878 + TEC TEC MGP_AJ_T0077488.1 MGP_AJ_G0030678.1 mouse_genomes_project 6 45492443 45499107 - MGP_AJ_P0077488 Gimap6 protein_coding protein_coding MGP_AJ_T0077489.1 MGP_AJ_G0030678.1 mouse_genomes_project 6 45492444 45499095 - MGP_AJ_P0077489 Gimap6 protein_coding protein_coding MGP_AJ_T0077490.1 MGP_AJ_G0030678.1 mouse_genomes_project 6 45494607 45499078 - MGP_AJ_P0077490 Gimap6 protein_coding protein_coding MGP_AJ_T0077491.1 MGP_AJ_G0030678.1 mouse_genomes_project 6 45495295 45497110 - Gimap6 protein_coding processed_transcript MGP_AJ_T0101855.1 MGP_AJ_G0039743.1 mouse_genomes_project 6 126752085 126753250 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0000307.1 MGP_AJ_G0000251.1 mouse_genomes_project 6 67222958 67223353 - IG_V_pseudogene IG_V_pseudogene MGP_AJ_T0004938.1 MGP_AJ_G0004239.1 mouse_genomes_project 6 37698908 37699206 + Gm29588 antisense antisense MGP_AJ_T0002050.1 MGP_AJ_G0001963.1 mouse_genomes_project 6 84773887 84775380 + TEC TEC MGP_AJ_T0080309.1 MGP_AJ_G0031267.1 mouse_genomes_project 6 123838080 123838761 + Tnfrsf1a protein_coding processed_transcript MGP_AJ_T0080310.1 MGP_AJ_G0031267.1 mouse_genomes_project 6 123838176 123846061 + MGP_AJ_P0080310 Tnfrsf1a protein_coding protein_coding MGP_AJ_T0080311.1 MGP_AJ_G0031267.1 mouse_genomes_project 6 123838448 123851241 + MGP_AJ_P0080311 Tnfrsf1a protein_coding protein_coding MGP_AJ_T0080312.1 MGP_AJ_G0031267.1 mouse_genomes_project 6 123846115 123849861 + MGP_AJ_P0080312 Tnfrsf1a protein_coding nonsense_mediated_decay MGP_AJ_T0080313.1 MGP_AJ_G0031267.1 mouse_genomes_project 6 123846515 123850534 + MGP_AJ_P0080313 Tnfrsf1a protein_coding protein_coding MGP_AJ_T0080314.1 MGP_AJ_G0031267.1 mouse_genomes_project 6 123849182 123850630 + Tnfrsf1a protein_coding retained_intron MGP_AJ_T0001964.1 MGP_AJ_G0001877.1 mouse_genomes_project 6 42052674 42054079 + TEC TEC MGP_AJ_T0101330.1 MGP_AJ_G0039296.1 mouse_genomes_project 6 24275404 24275521 + Gm26310 snoRNA snoRNA MGP_AJ_T0015668.1 MGP_AJ_G0013763.1 mouse_genomes_project 6 145671823 145672171 - processed_pseudogene processed_pseudogene MGP_AJ_T0005060.1 MGP_AJ_G0004315.1 mouse_genomes_project 6 111689020 111691146 - Gm44199 antisense antisense MGP_AJ_T0079127.1 MGP_AJ_G0031046.1 mouse_genomes_project 6 95375592 95575335 - MGP_AJ_P0079127 Frmd4b protein_coding protein_coding MGP_AJ_T0079128.1 MGP_AJ_G0031046.1 mouse_genomes_project 6 95375763 95379985 - Frmd4b protein_coding retained_intron MGP_AJ_T0079129.1 MGP_AJ_G0031046.1 mouse_genomes_project 6 95375813 95401099 - Frmd4b protein_coding processed_transcript MGP_AJ_T0079130.1 MGP_AJ_G0031046.1 mouse_genomes_project 6 95375819 95545897 - MGP_AJ_P0079130 Frmd4b protein_coding protein_coding MGP_AJ_T0079131.1 MGP_AJ_G0031046.1 mouse_genomes_project 6 95395912 95401149 - Frmd4b protein_coding retained_intron MGP_AJ_T0079132.1 MGP_AJ_G0031046.1 mouse_genomes_project 6 95396846 95412881 - Frmd4b protein_coding processed_transcript MGP_AJ_T0079133.1 MGP_AJ_G0031046.1 mouse_genomes_project 6 95397424 95443626 - Frmd4b protein_coding retained_intron MGP_AJ_T0079134.1 MGP_AJ_G0031046.1 mouse_genomes_project 6 95412398 95479940 - Frmd4b protein_coding processed_transcript MGP_AJ_T0079135.1 MGP_AJ_G0031046.1 mouse_genomes_project 6 95413056 95575384 - Frmd4b protein_coding processed_transcript MGP_AJ_T0079136.1 MGP_AJ_G0031046.1 mouse_genomes_project 6 95440381 95708038 - Frmd4b protein_coding retained_intron MGP_AJ_T0079137.1 MGP_AJ_G0031046.1 mouse_genomes_project 6 95478990 95479908 - Frmd4b protein_coding retained_intron MGP_AJ_T0079138.1 MGP_AJ_G0031046.1 mouse_genomes_project 6 95479458 95515038 - MGP_AJ_P0079138 Frmd4b protein_coding protein_coding MGP_AJ_T0008673.1 MGP_AJ_G0007009.1 mouse_genomes_project 6 86121949 86124331 - Gm44246 lincRNA lincRNA MGP_AJ_T0078900.1 MGP_AJ_G0030987.1 mouse_genomes_project 6 87639018 87670583 + MGP_AJ_P0078900 Txnrd3 protein_coding protein_coding MGP_AJ_T0078901.1 MGP_AJ_G0030987.1 mouse_genomes_project 6 87639018 87670583 + MGP_AJ_P0078901 Txnrd3 protein_coding protein_coding MGP_AJ_T0078226.1 MGP_AJ_G0030860.1 mouse_genomes_project 6 74964019 74979071 + MGP_AJ_P0078226 Lrrtm1 protein_coding nonsense_mediated_decay MGP_AJ_T0078227.1 MGP_AJ_G0030860.1 mouse_genomes_project 6 74964027 74966848 + MGP_AJ_P0078227 Lrrtm1 protein_coding protein_coding MGP_AJ_T0078228.1 MGP_AJ_G0030860.1 mouse_genomes_project 6 74964048 74966842 + MGP_AJ_P0078228 Lrrtm1 protein_coding protein_coding MGP_AJ_T0078229.1 MGP_AJ_G0030860.1 mouse_genomes_project 6 74964252 74965443 + MGP_AJ_P0078229 Lrrtm1 protein_coding protein_coding MGP_AJ_T0078990.1 MGP_AJ_G0031015.1 mouse_genomes_project 6 89514689 89526219 - MGP_AJ_P0078990 Chchd4 protein_coding protein_coding MGP_AJ_T0078991.1 MGP_AJ_G0031015.1 mouse_genomes_project 6 89524272 89526122 - Chchd4 protein_coding retained_intron MGP_AJ_T0015621.1 MGP_AJ_G0013716.1 mouse_genomes_project 6 129154030 129154151 - processed_pseudogene processed_pseudogene MGP_AJ_T0077022.1 MGP_AJ_G0030545.1 mouse_genomes_project 6 32163222 32193761 - MGP_AJ_P0077022 Mtpn protein_coding protein_coding MGP_AJ_T0077023.1 MGP_AJ_G0030545.1 mouse_genomes_project 6 32175798 32193672 - MGP_AJ_P0077023 Mtpn protein_coding protein_coding MGP_AJ_T0002076.1 MGP_AJ_G0001989.1 mouse_genomes_project 6 88545229 88545742 + TEC TEC MGP_AJ_T0002678.1 MGP_AJ_G0002559.1 mouse_genomes_project 6 37906304 37906795 + MGP_AJ_P0002678 Trbv16 TR_V_gene TR_V_gene MGP_AJ_T0001993.1 MGP_AJ_G0001906.1 mouse_genomes_project 6 53795341 53798325 - TEC TEC MGP_AJ_T0002179.1 MGP_AJ_G0002091.1 mouse_genomes_project 6 145274965 145277314 - TEC TEC MGP_AJ_T0015510.1 MGP_AJ_G0013605.1 mouse_genomes_project 6 99248698 99248938 - processed_pseudogene processed_pseudogene MGP_AJ_T0076391.1 MGP_AJ_G0030431.1 mouse_genomes_project 6 9842518 9909463 - MGP_AJ_P0076391 protein_coding protein_coding MGP_AJ_T0076392.1 MGP_AJ_G0030431.1 mouse_genomes_project 6 9860353 9863112 - protein_coding retained_intron MGP_AJ_T0076393.1 MGP_AJ_G0030431.1 mouse_genomes_project 6 9871659 9909463 - MGP_AJ_P0076393 protein_coding protein_coding MGP_AJ_T0076394.1 MGP_AJ_G0030431.1 mouse_genomes_project 6 9882082 9893340 - protein_coding retained_intron MGP_AJ_T0011649.1 MGP_AJ_G0009771.1 mouse_genomes_project 6 49085117 49085294 + Gm27543 misc_RNA misc_RNA MGP_AJ_T0000049.1 MGP_AJ_G0000040.1 mouse_genomes_project 6 68428139 68428182 + Igkj2 IG_J_gene processed_transcript MGP_AJ_T0000050.1 MGP_AJ_G0000040.1 mouse_genomes_project 6 68428139 68428178 + MGP_AJ_P0000050 Igkj2 IG_J_gene IG_J_gene MGP_AJ_T0015624.1 MGP_AJ_G0013719.1 mouse_genomes_project 6 129804139 129805882 + processed_pseudogene processed_pseudogene MGP_AJ_T0079313.1 MGP_AJ_G0031081.1 mouse_genomes_project 6 111149292 111179527 + Setd5 protein_coding retained_intron MGP_AJ_T0079314.1 MGP_AJ_G0031081.1 mouse_genomes_project 6 111149292 111226491 + MGP_AJ_P0079314 Setd5 protein_coding protein_coding MGP_AJ_T0079315.1 MGP_AJ_G0031081.1 mouse_genomes_project 6 111149488 111178285 + Setd5 protein_coding processed_transcript MGP_AJ_T0079316.1 MGP_AJ_G0031081.1 mouse_genomes_project 6 111149529 111189583 + Setd5 protein_coding processed_transcript MGP_AJ_T0079317.1 MGP_AJ_G0031081.1 mouse_genomes_project 6 111149566 111226480 + MGP_AJ_P0079317 Setd5 protein_coding protein_coding MGP_AJ_T0079318.1 MGP_AJ_G0031081.1 mouse_genomes_project 6 111176900 111210242 + Setd5 protein_coding processed_transcript MGP_AJ_T0079319.1 MGP_AJ_G0031081.1 mouse_genomes_project 6 111177002 111226491 + MGP_AJ_P0079319 Setd5 protein_coding protein_coding MGP_AJ_T0079320.1 MGP_AJ_G0031081.1 mouse_genomes_project 6 111180716 111226490 + MGP_AJ_P0079320 Setd5 protein_coding unknown_likely_coding MGP_AJ_T0079321.1 MGP_AJ_G0031081.1 mouse_genomes_project 6 111180838 111189897 + Setd5 protein_coding retained_intron MGP_AJ_T0079322.1 MGP_AJ_G0031081.1 mouse_genomes_project 6 111181830 111224891 + Setd5 protein_coding retained_intron MGP_AJ_T0079323.1 MGP_AJ_G0031081.1 mouse_genomes_project 6 111182382 111185655 + Setd5 protein_coding retained_intron MGP_AJ_T0079324.1 MGP_AJ_G0031081.1 mouse_genomes_project 6 111182382 111189552 + Setd5 protein_coding retained_intron MGP_AJ_T0079325.1 MGP_AJ_G0031081.1 mouse_genomes_project 6 111197314 111202348 + Setd5 protein_coding retained_intron MGP_AJ_T0079326.1 MGP_AJ_G0031081.1 mouse_genomes_project 6 111199714 111224912 + Setd5 protein_coding retained_intron MGP_AJ_T0079327.1 MGP_AJ_G0031081.1 mouse_genomes_project 6 111200646 111210478 + Setd5 protein_coding processed_transcript MGP_AJ_T0100099.1 MGP_AJ_G0038065.1 mouse_genomes_project 6 81526723 81526820 + Gm25054 snRNA snRNA MGP_AJ_T0015603.1 MGP_AJ_G0013698.1 mouse_genomes_project 6 126287075 126287301 + processed_pseudogene processed_pseudogene MGP_AJ_T0002068.1 MGP_AJ_G0001981.1 mouse_genomes_project 6 86678693 86681865 + TEC TEC MGP_AJ_T0079965.1 MGP_AJ_G0031196.1 mouse_genomes_project 6 120843979 120853444 + MGP_AJ_P0079965 Mfap5 protein_coding protein_coding MGP_AJ_T0079966.1 MGP_AJ_G0031196.1 mouse_genomes_project 6 120851651 120866622 + MGP_AJ_P0079966 Mfap5 protein_coding protein_coding MGP_AJ_T0079967.1 MGP_AJ_G0031196.1 mouse_genomes_project 6 120851651 120867146 + MGP_AJ_P0079967 Mfap5 protein_coding protein_coding MGP_AJ_T0079968.1 MGP_AJ_G0031196.1 mouse_genomes_project 6 120851727 120866488 + MGP_AJ_P0079968 Mfap5 protein_coding protein_coding MGP_AJ_T0079969.1 MGP_AJ_G0031196.1 mouse_genomes_project 6 120851744 120866194 + MGP_AJ_P0079969 Mfap5 protein_coding protein_coding MGP_AJ_T0079970.1 MGP_AJ_G0031196.1 mouse_genomes_project 6 120851744 120866488 + MGP_AJ_P0079970 Mfap5 protein_coding protein_coding MGP_AJ_T0079971.1 MGP_AJ_G0031196.1 mouse_genomes_project 6 120860363 120866491 + Mfap5 protein_coding retained_intron MGP_AJ_T0008617.1 MGP_AJ_G0006962.1 mouse_genomes_project 6 50076983 50080789 + Gm4872 lincRNA lincRNA MGP_AJ_T0015680.1 MGP_AJ_G0013775.1 mouse_genomes_project 6 148420000 148420450 + processed_pseudogene processed_pseudogene MGP_AJ_T0005080.1 MGP_AJ_G0004335.1 mouse_genomes_project 6 123969606 123973020 + Gm28809 antisense antisense MGP_AJ_T0005081.1 MGP_AJ_G0004335.1 mouse_genomes_project 6 123970187 123971889 + Gm28809 antisense antisense MGP_AJ_T0076260.1 MGP_AJ_G0030403.1 mouse_genomes_project 6 1465856 1478989 + MGP_AJ_P0076260 protein_coding protein_coding MGP_AJ_T0076261.1 MGP_AJ_G0030403.1 mouse_genomes_project 6 1465856 1478991 + MGP_AJ_P0076261 protein_coding protein_coding MGP_AJ_T0076262.1 MGP_AJ_G0030403.1 mouse_genomes_project 6 1465956 1478993 + MGP_AJ_P0076262 protein_coding protein_coding MGP_AJ_T0101856.1 MGP_AJ_G0039744.1 mouse_genomes_project 6 144427442 144441996 + transcribed_processed_pseudogene processed_transcript MGP_AJ_T0101857.1 MGP_AJ_G0039744.1 mouse_genomes_project 6 144427443 144432089 + transcribed_processed_pseudogene processed_transcript MGP_AJ_T0101858.1 MGP_AJ_G0039744.1 mouse_genomes_project 6 144430156 144431898 + transcribed_processed_pseudogene processed_transcript MGP_AJ_T0101859.1 MGP_AJ_G0039744.1 mouse_genomes_project 6 144431274 144432015 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0015286.1 MGP_AJ_G0013381.1 mouse_genomes_project 6 26408079 26408444 + processed_pseudogene processed_pseudogene MGP_AJ_T0078149.1 MGP_AJ_G0030846.1 mouse_genomes_project 6 70136823 70153294 + MGP_AJ_P0078149 Ggcx protein_coding protein_coding MGP_AJ_T0078150.1 MGP_AJ_G0030846.1 mouse_genomes_project 6 70136856 70152983 + MGP_AJ_P0078150 Ggcx protein_coding nonsense_mediated_decay MGP_AJ_T0078151.1 MGP_AJ_G0030846.1 mouse_genomes_project 6 70140370 70152824 + MGP_AJ_P0078151 Ggcx protein_coding nonsense_mediated_decay MGP_AJ_T0078152.1 MGP_AJ_G0030846.1 mouse_genomes_project 6 70140421 70146556 + MGP_AJ_P0078152 Ggcx protein_coding nonsense_mediated_decay MGP_AJ_T0078153.1 MGP_AJ_G0030846.1 mouse_genomes_project 6 70149132 70151840 + MGP_AJ_P0078153 Ggcx protein_coding nonsense_mediated_decay MGP_AJ_T0080854.1 MGP_AJ_G0031421.1 mouse_genomes_project 6 138911936 138963525 - MGP_AJ_P0080854 Plcz1 protein_coding protein_coding MGP_AJ_T0080855.1 MGP_AJ_G0031421.1 mouse_genomes_project 6 138911985 138963499 - MGP_AJ_P0080855 Plcz1 protein_coding nonsense_mediated_decay MGP_AJ_T0080856.1 MGP_AJ_G0031421.1 mouse_genomes_project 6 138911987 138963480 - MGP_AJ_P0080856 Plcz1 protein_coding nonsense_mediated_decay MGP_AJ_T0080857.1 MGP_AJ_G0031421.1 mouse_genomes_project 6 138912034 138936436 - MGP_AJ_P0080857 Plcz1 protein_coding unknown_likely_coding MGP_AJ_T0080858.1 MGP_AJ_G0031421.1 mouse_genomes_project 6 138942971 138963480 - MGP_AJ_P0080858 Plcz1 protein_coding nonsense_mediated_decay MGP_AJ_T0077760.1 MGP_AJ_G0030739.1 mouse_genomes_project 6 52034623 52039479 - MGP_AJ_P0077760 Inmt protein_coding protein_coding MGP_AJ_T0077761.1 MGP_AJ_G0030739.1 mouse_genomes_project 6 52037198 52039450 - Inmt protein_coding retained_intron MGP_AJ_T0008592.1 MGP_AJ_G0006944.1 mouse_genomes_project 6 45546669 45547822 - Gm44226 lincRNA lincRNA MGP_AJ_T0076582.1 MGP_AJ_G0030465.1 mouse_genomes_project 6 20737980 20817286 - MGP_AJ_P0076582 Slc13a1 protein_coding protein_coding MGP_AJ_T0076583.1 MGP_AJ_G0030465.1 mouse_genomes_project 6 20738247 20758296 - Slc13a1 protein_coding processed_transcript MGP_AJ_T0076584.1 MGP_AJ_G0030465.1 mouse_genomes_project 6 20755013 20758293 - Slc13a1 protein_coding retained_intron MGP_AJ_T0076585.1 MGP_AJ_G0030465.1 mouse_genomes_project 6 20785157 20817284 - Slc13a1 protein_coding retained_intron MGP_AJ_T0077710.1 MGP_AJ_G0030728.1 mouse_genomes_project 6 51185645 51187724 + Prr15 protein_coding retained_intron MGP_AJ_T0077711.1 MGP_AJ_G0030728.1 mouse_genomes_project 6 51186693 51190011 + MGP_AJ_P0077711 Prr15 protein_coding protein_coding MGP_AJ_T0015315.1 MGP_AJ_G0013410.1 mouse_genomes_project 6 39467801 39467967 - processed_pseudogene processed_pseudogene MGP_AJ_T0008597.1 MGP_AJ_G0006948.1 mouse_genomes_project 6 46853956 46904428 + Gm3455 lincRNA lincRNA MGP_AJ_T0101367.1 MGP_AJ_G0039333.1 mouse_genomes_project 6 95637955 95638085 - Gm25852 snoRNA snoRNA MGP_AJ_T0079855.1 MGP_AJ_G0031173.1 mouse_genomes_project 6 118612384 118632802 + Il17ra protein_coding retained_intron MGP_AJ_T0079856.1 MGP_AJ_G0031173.1 mouse_genomes_project 6 118612384 118638066 + MGP_AJ_P0079856 Il17ra protein_coding protein_coding MGP_AJ_T0079857.1 MGP_AJ_G0031173.1 mouse_genomes_project 6 118622669 118629105 + Il17ra protein_coding processed_transcript MGP_AJ_T0078662.1 MGP_AJ_G0030944.1 mouse_genomes_project 6 84428892 84430724 - MGP_AJ_P0078662 Pcbp1 protein_coding protein_coding MGP_AJ_T0015583.1 MGP_AJ_G0013678.1 mouse_genomes_project 6 121766754 121767514 + processed_pseudogene processed_pseudogene MGP_AJ_T0002669.1 MGP_AJ_G0002551.1 mouse_genomes_project 6 37816065 37816537 + MGP_AJ_P0002669 Trbv5 TR_V_gene TR_V_gene MGP_AJ_T0015470.1 MGP_AJ_G0013565.1 mouse_genomes_project 6 82989402 82990342 - processed_pseudogene processed_pseudogene MGP_AJ_T0008707.1 MGP_AJ_G0007032.1 mouse_genomes_project 6 99928955 99935811 + Gm44176 lincRNA lincRNA MGP_AJ_T0079628.1 MGP_AJ_G0031134.1 mouse_genomes_project 6 114366688 114431305 + MGP_AJ_P0079628 Zfand4 protein_coding protein_coding MGP_AJ_T0079629.1 MGP_AJ_G0031134.1 mouse_genomes_project 6 114366706 114431316 + MGP_AJ_P0079629 Zfand4 protein_coding unknown_likely_coding MGP_AJ_T0001905.1 MGP_AJ_G0001818.1 mouse_genomes_project 6 18708 20822 - TEC TEC MGP_AJ_T0078887.1 MGP_AJ_G0030984.1 mouse_genomes_project 6 87049006 87060708 + protein_coding lincRNA MGP_AJ_T0078888.1 MGP_AJ_G0030984.1 mouse_genomes_project 6 87049006 87062902 + protein_coding lincRNA MGP_AJ_T0078889.1 MGP_AJ_G0030984.1 mouse_genomes_project 6 87053933 87060995 + protein_coding lincRNA MGP_AJ_T0078890.1 MGP_AJ_G0030984.1 mouse_genomes_project 6 87054341 87062901 + MGP_AJ_P0078890 protein_coding protein_coding MGP_AJ_T0015480.1 MGP_AJ_G0013575.1 mouse_genomes_project 6 87898165 87899125 + processed_pseudogene processed_pseudogene MGP_AJ_T0011663.1 MGP_AJ_G0009785.1 mouse_genomes_project 6 106526845 106527199 + Gm27813 misc_RNA misc_RNA MGP_AJ_T0079125.1 MGP_AJ_G0031044.1 mouse_genomes_project 6 95296967 95319948 + MGP_AJ_P0079125 Arl6ip5 protein_coding protein_coding MGP_AJ_T0078010.1 MGP_AJ_G0030816.1 mouse_genomes_project 6 64526057 64596132 - MGP_AJ_P0078010 Il23r protein_coding protein_coding MGP_AJ_T0102730.1 MGP_AJ_G0040471.1 mouse_genomes_project 6 131504062 131504964 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0077928.1 MGP_AJ_G0030796.1 mouse_genomes_project 6 62126918 62141270 + MGP_AJ_P0077928 Smarcad1 protein_coding protein_coding MGP_AJ_T0077929.1 MGP_AJ_G0030796.1 mouse_genomes_project 6 62126944 62194900 + MGP_AJ_P0077929 Smarcad1 protein_coding protein_coding MGP_AJ_T0077930.1 MGP_AJ_G0030796.1 mouse_genomes_project 6 62126956 62127897 + Smarcad1 protein_coding retained_intron MGP_AJ_T0077931.1 MGP_AJ_G0030796.1 mouse_genomes_project 6 62127002 62128467 + MGP_AJ_P0077931 Smarcad1 protein_coding protein_coding MGP_AJ_T0077932.1 MGP_AJ_G0030796.1 mouse_genomes_project 6 62127171 62128539 + MGP_AJ_P0077932 Smarcad1 protein_coding protein_coding MGP_AJ_T0077933.1 MGP_AJ_G0030796.1 mouse_genomes_project 6 62127193 62137506 + MGP_AJ_P0077933 Smarcad1 protein_coding nonsense_mediated_decay MGP_AJ_T0077934.1 MGP_AJ_G0030796.1 mouse_genomes_project 6 62127201 62137595 + MGP_AJ_P0077934 Smarcad1 protein_coding nonsense_mediated_decay MGP_AJ_T0077935.1 MGP_AJ_G0030796.1 mouse_genomes_project 6 62127214 62166363 + Smarcad1 protein_coding processed_transcript MGP_AJ_T0077936.1 MGP_AJ_G0030796.1 mouse_genomes_project 6 62127548 62194437 + MGP_AJ_P0077936 Smarcad1 protein_coding nonsense_mediated_decay MGP_AJ_T0077937.1 MGP_AJ_G0030796.1 mouse_genomes_project 6 62137628 62152271 + Smarcad1 protein_coding retained_intron MGP_AJ_T0077938.1 MGP_AJ_G0030796.1 mouse_genomes_project 6 62142445 62159687 + Smarcad1 protein_coding processed_transcript MGP_AJ_T0077939.1 MGP_AJ_G0030796.1 mouse_genomes_project 6 62159852 62178979 + MGP_AJ_P0077939 Smarcad1 protein_coding nonsense_mediated_decay MGP_AJ_T0077940.1 MGP_AJ_G0030796.1 mouse_genomes_project 6 62162177 62165239 + Smarcad1 protein_coding retained_intron MGP_AJ_T0077941.1 MGP_AJ_G0030796.1 mouse_genomes_project 6 62180480 62181123 + Smarcad1 protein_coding retained_intron MGP_AJ_T0077942.1 MGP_AJ_G0030796.1 mouse_genomes_project 6 62186291 62188817 + Smarcad1 protein_coding retained_intron MGP_AJ_T0077985.1 MGP_AJ_G0030813.1 mouse_genomes_project 6 64116208 64118519 - MGP_AJ_P0077985 Gadd45a protein_coding protein_coding MGP_AJ_T0077986.1 MGP_AJ_G0030813.1 mouse_genomes_project 6 64116571 64118314 - Gadd45a protein_coding retained_intron MGP_AJ_T0077987.1 MGP_AJ_G0030813.1 mouse_genomes_project 6 64116571 64118477 - MGP_AJ_P0077987 Gadd45a protein_coding protein_coding MGP_AJ_T0077988.1 MGP_AJ_G0030813.1 mouse_genomes_project 6 64116578 64118364 - MGP_AJ_P0077988 Gadd45a protein_coding protein_coding MGP_AJ_T0077989.1 MGP_AJ_G0030813.1 mouse_genomes_project 6 64116691 64118299 - Gadd45a protein_coding retained_intron MGP_AJ_T0077990.1 MGP_AJ_G0030813.1 mouse_genomes_project 6 64117483 64118490 - Gadd45a protein_coding retained_intron MGP_AJ_T0077991.1 MGP_AJ_G0030813.1 mouse_genomes_project 6 64118009 64118570 - Gadd45a protein_coding retained_intron MGP_AJ_T0079655.1 MGP_AJ_G0031140.1 mouse_genomes_project 6 114660697 114665800 + MGP_AJ_P0079655 protein_coding protein_coding MGP_AJ_T0080408.1 MGP_AJ_G0031290.1 mouse_genomes_project 6 126770739 126819252 - MGP_AJ_P0080408 Tead4 protein_coding protein_coding MGP_AJ_T0080409.1 MGP_AJ_G0031290.1 mouse_genomes_project 6 126814963 126844908 - MGP_AJ_P0080409 Tead4 protein_coding protein_coding MGP_AJ_T0080410.1 MGP_AJ_G0031290.1 mouse_genomes_project 6 126815013 126844823 - MGP_AJ_P0080410 Tead4 protein_coding protein_coding MGP_AJ_T0079722.1 MGP_AJ_G0031156.1 mouse_genomes_project 6 116575572 116594129 - MGP_AJ_P0079722 Zfp9 protein_coding protein_coding MGP_AJ_T0079723.1 MGP_AJ_G0031156.1 mouse_genomes_project 6 116580463 116583228 - Zfp9 protein_coding retained_intron MGP_AJ_T0101393.1 MGP_AJ_G0039359.1 mouse_genomes_project 6 143841608 143841741 - Gm22792 snoRNA snoRNA MGP_AJ_T0001937.1 MGP_AJ_G0001850.1 mouse_genomes_project 6 25188984 25190971 + TEC TEC MGP_AJ_T0002097.1 MGP_AJ_G0002010.1 mouse_genomes_project 6 98355314 98357834 - TEC TEC MGP_AJ_T0000273.1 MGP_AJ_G0000217.1 mouse_genomes_project 6 65017038 65017504 + IG_V_pseudogene IG_V_pseudogene MGP_AJ_T0000168.1 MGP_AJ_G0000127.1 mouse_genomes_project 6 66088823 66089370 - MGP_AJ_P0000168 Igkv4-91 IG_V_gene IG_V_gene MGP_AJ_T0008672.1 MGP_AJ_G0007008.1 mouse_genomes_project 6 85700183 85701521 + Gm43904 lincRNA lincRNA MGP_AJ_T0080612.1 MGP_AJ_G0031359.1 mouse_genomes_project 6 131386104 131387034 - MGP_AJ_P0080612 Tas2r122 protein_coding protein_coding MGP_AJ_T0008733.1 MGP_AJ_G0007056.1 mouse_genomes_project 6 120728522 120729831 + 1700063H04Rik lincRNA lincRNA MGP_AJ_T0002069.1 MGP_AJ_G0001982.1 mouse_genomes_project 6 86683225 86686113 + TEC TEC MGP_AJ_T0001976.1 MGP_AJ_G0001889.1 mouse_genomes_project 6 42893026 42897369 + TEC TEC MGP_AJ_T0002677.1 MGP_AJ_G0002558.1 mouse_genomes_project 6 37895753 37896224 + MGP_AJ_P0002677 Trbv15 TR_V_gene TR_V_gene MGP_AJ_T0000191.1 MGP_AJ_G0000144.1 mouse_genomes_project 6 67572323 67573048 - MGP_AJ_P0000191 Igkv1-35 IG_V_gene IG_V_gene MGP_AJ_T0000192.1 MGP_AJ_G0000144.1 mouse_genomes_project 6 67572323 67573048 - MGP_AJ_P0000192 Igkv1-35 IG_V_gene IG_V_gene MGP_AJ_T0002006.1 MGP_AJ_G0001919.1 mouse_genomes_project 6 69522657 69523921 + TEC TEC MGP_AJ_T0077347.1 MGP_AJ_G0030648.1 mouse_genomes_project 6 40019863 40020922 + MGP_AJ_P0077347 Olfr47 protein_coding protein_coding MGP_AJ_T0015635.1 MGP_AJ_G0013730.1 mouse_genomes_project 6 131050517 131051006 - processed_pseudogene processed_pseudogene MGP_AJ_T0005097.1 MGP_AJ_G0004348.1 mouse_genomes_project 6 133003864 133006994 - Gm17088 antisense antisense MGP_AJ_T0077662.1 MGP_AJ_G0030721.1 mouse_genomes_project 6 49400528 49495368 - MGP_AJ_P0077662 Hibadh protein_coding protein_coding MGP_AJ_T0077663.1 MGP_AJ_G0030721.1 mouse_genomes_project 6 49400996 49485224 - Hibadh protein_coding retained_intron MGP_AJ_T0077664.1 MGP_AJ_G0030721.1 mouse_genomes_project 6 49403152 49411044 - Hibadh protein_coding retained_intron MGP_AJ_T0077665.1 MGP_AJ_G0030721.1 mouse_genomes_project 6 49408544 49410646 - Hibadh protein_coding retained_intron MGP_AJ_T0077666.1 MGP_AJ_G0030721.1 mouse_genomes_project 6 49489211 49495294 - Hibadh protein_coding retained_intron MGP_AJ_T0015634.1 MGP_AJ_G0013729.1 mouse_genomes_project 6 131045489 131045724 - processed_pseudogene processed_pseudogene MGP_AJ_T0011660.1 MGP_AJ_G0009782.1 mouse_genomes_project 6 86343177 86343502 + Gm25178 misc_RNA misc_RNA MGP_AJ_T0078023.1 MGP_AJ_G0030822.1 mouse_genomes_project 6 68838610 68854888 - MGP_AJ_P0078023 Thnsl2 protein_coding protein_coding MGP_AJ_T0078024.1 MGP_AJ_G0030822.1 mouse_genomes_project 6 68838842 68854796 - MGP_AJ_P0078024 Thnsl2 protein_coding protein_coding MGP_AJ_T0078025.1 MGP_AJ_G0030822.1 mouse_genomes_project 6 68839100 68842421 - MGP_AJ_P0078025 Thnsl2 protein_coding protein_coding MGP_AJ_T0078026.1 MGP_AJ_G0030822.1 mouse_genomes_project 6 68842214 68854780 - Thnsl2 protein_coding processed_transcript MGP_AJ_T0000297.1 MGP_AJ_G0000241.1 mouse_genomes_project 6 66293752 66294382 - IG_V_pseudogene IG_V_pseudogene MGP_AJ_T0015589.1 MGP_AJ_G0013684.1 mouse_genomes_project 6 123439113 123439564 - processed_pseudogene processed_pseudogene MGP_AJ_T0079479.1 MGP_AJ_G0031109.1 mouse_genomes_project 6 112367520 112403592 + MGP_AJ_P0079479 Slc6a1 protein_coding protein_coding MGP_AJ_T0079480.1 MGP_AJ_G0031109.1 mouse_genomes_project 6 112367579 112392574 + Slc6a1 protein_coding retained_intron MGP_AJ_T0079481.1 MGP_AJ_G0031109.1 mouse_genomes_project 6 112367579 112398589 + Slc6a1 protein_coding retained_intron MGP_AJ_T0079482.1 MGP_AJ_G0031109.1 mouse_genomes_project 6 112385469 112387398 + Slc6a1 protein_coding processed_transcript MGP_AJ_T0079483.1 MGP_AJ_G0031109.1 mouse_genomes_project 6 112386690 112387398 + Slc6a1 protein_coding retained_intron MGP_AJ_T0079484.1 MGP_AJ_G0031109.1 mouse_genomes_project 6 112399345 112401664 + Slc6a1 protein_coding retained_intron MGP_AJ_T0077855.1 MGP_AJ_G0030776.1 mouse_genomes_project 6 54634386 54733452 - MGP_AJ_P0077855 Vopp1 protein_coding protein_coding MGP_AJ_T0077856.1 MGP_AJ_G0030776.1 mouse_genomes_project 6 54660393 54733296 - MGP_AJ_P0077856 Vopp1 protein_coding protein_coding MGP_AJ_T0077857.1 MGP_AJ_G0030776.1 mouse_genomes_project 6 54662700 54733466 - MGP_AJ_P0077857 Vopp1 protein_coding protein_coding MGP_AJ_T0077858.1 MGP_AJ_G0030776.1 mouse_genomes_project 6 54666568 54733470 - MGP_AJ_P0077858 Vopp1 protein_coding protein_coding MGP_AJ_T0077859.1 MGP_AJ_G0030776.1 mouse_genomes_project 6 54670788 54732956 - Vopp1 protein_coding processed_transcript MGP_AJ_T0015382.1 MGP_AJ_G0013477.1 mouse_genomes_project 6 62072643 62073205 + processed_pseudogene processed_pseudogene MGP_AJ_T0077328.1 MGP_AJ_G0030635.1 mouse_genomes_project 6 39517501 39519294 + MGP_AJ_P0077328 protein_coding protein_coding MGP_AJ_T0002183.1 MGP_AJ_G0002095.1 mouse_genomes_project 6 147201333 147204812 + TEC TEC MGP_AJ_T0011638.1 MGP_AJ_G0009760.1 mouse_genomes_project 6 44535433 44535535 + Rny3 misc_RNA misc_RNA MGP_AJ_T0015503.1 MGP_AJ_G0013598.1 mouse_genomes_project 6 97858486 97858952 + processed_pseudogene processed_pseudogene MGP_AJ_T0011656.1 MGP_AJ_G0009778.1 mouse_genomes_project 6 81508044 81508231 + Gm27772 misc_RNA misc_RNA MGP_AJ_T0002062.1 MGP_AJ_G0001975.1 mouse_genomes_project 6 85778292 85779379 + TEC TEC MGP_AJ_T0015571.1 MGP_AJ_G0013666.1 mouse_genomes_project 6 120284269 120284401 - processed_pseudogene processed_pseudogene MGP_AJ_T0004923.1 MGP_AJ_G0004226.1 mouse_genomes_project 6 29730243 29735002 + Gm14540 antisense antisense MGP_AJ_T0010763.1 MGP_AJ_G0008885.1 mouse_genomes_project 6 45211369 45211443 + Gm24325 miRNA miRNA MGP_AJ_T0000174.1 MGP_AJ_G0000132.1 mouse_genomes_project 6 66235476 66236004 - MGP_AJ_P0000174 Igkv4-86 IG_V_gene IG_V_gene MGP_AJ_T0000175.1 MGP_AJ_G0000132.1 mouse_genomes_project 6 66235476 66236039 - MGP_AJ_P0000175 Igkv4-86 IG_V_gene IG_V_gene MGP_AJ_T0080148.1 MGP_AJ_G0031241.1 mouse_genomes_project 6 123315823 123318943 + MGP_AJ_P0080148 Cdca3 protein_coding protein_coding MGP_AJ_T0080149.1 MGP_AJ_G0031241.1 mouse_genomes_project 6 123315964 123319980 + MGP_AJ_P0080149 Cdca3 protein_coding protein_coding MGP_AJ_T0080150.1 MGP_AJ_G0031241.1 mouse_genomes_project 6 123316493 123318864 + MGP_AJ_P0080150 Cdca3 protein_coding protein_coding MGP_AJ_T0080151.1 MGP_AJ_G0031241.1 mouse_genomes_project 6 123316511 123319811 + Cdca3 protein_coding retained_intron MGP_AJ_T0080152.1 MGP_AJ_G0031241.1 mouse_genomes_project 6 123316639 123318311 + Cdca3 protein_coding retained_intron MGP_AJ_T0080153.1 MGP_AJ_G0031241.1 mouse_genomes_project 6 123316651 123318718 + MGP_AJ_P0080153 Cdca3 protein_coding protein_coding MGP_AJ_T0080604.1 MGP_AJ_G0031352.1 mouse_genomes_project 6 130374994 130375924 - MGP_AJ_P0080604 Tas2r114 protein_coding protein_coding MGP_AJ_T0015661.1 MGP_AJ_G0013756.1 mouse_genomes_project 6 139971534 139971651 - processed_pseudogene processed_pseudogene MGP_AJ_T0077863.1 MGP_AJ_G0030778.1 mouse_genomes_project 6 54816240 54817447 - MGP_AJ_P0077863 Vmn1r22 protein_coding protein_coding MGP_AJ_T0005128.1 MGP_AJ_G0004375.1 mouse_genomes_project 6 147009949 147044883 - Far2os2 antisense antisense MGP_AJ_T0077071.1 MGP_AJ_G0030558.1 mouse_genomes_project 6 35091768 35138677 + MGP_AJ_P0077071 Ttc26 protein_coding protein_coding MGP_AJ_T0077072.1 MGP_AJ_G0030558.1 mouse_genomes_project 6 35091824 35105441 + MGP_AJ_P0077072 Ttc26 protein_coding protein_coding MGP_AJ_T0077073.1 MGP_AJ_G0030558.1 mouse_genomes_project 6 35091824 35138677 + MGP_AJ_P0077073 Ttc26 protein_coding nonsense_mediated_decay MGP_AJ_T0077074.1 MGP_AJ_G0030558.1 mouse_genomes_project 6 35091828 35108623 + MGP_AJ_P0077074 Ttc26 protein_coding nonsense_mediated_decay MGP_AJ_T0077075.1 MGP_AJ_G0030558.1 mouse_genomes_project 6 35101807 35105779 + Ttc26 protein_coding retained_intron MGP_AJ_T0015363.1 MGP_AJ_G0013458.1 mouse_genomes_project 6 55561745 55562006 + processed_pseudogene processed_pseudogene MGP_AJ_T0001984.1 MGP_AJ_G0001897.1 mouse_genomes_project 6 49133632 49134360 + TEC TEC MGP_AJ_T0000181.1 MGP_AJ_G0000137.1 mouse_genomes_project 6 67272313 67272813 - MGP_AJ_P0000181 Igkv12-46 IG_V_gene IG_V_gene MGP_AJ_T0002143.1 MGP_AJ_G0002055.1 mouse_genomes_project 6 126296234 126298512 - TEC TEC MGP_AJ_T0101336.1 MGP_AJ_G0039302.1 mouse_genomes_project 6 40670043 40670174 + Gm22939 snoRNA snoRNA MGP_AJ_T0008664.1 MGP_AJ_G0007001.1 mouse_genomes_project 6 84386292 84392104 - 2310040G24Rik lincRNA lincRNA MGP_AJ_T0008665.1 MGP_AJ_G0007001.1 mouse_genomes_project 6 84386292 84392081 - 2310040G24Rik lincRNA lincRNA MGP_AJ_T0008783.1 MGP_AJ_G0007091.1 mouse_genomes_project 6 144289409 144290726 + Gm15706 lincRNA lincRNA MGP_AJ_T0079708.1 MGP_AJ_G0031152.1 mouse_genomes_project 6 116219045 116241214 - protein_coding retained_intron MGP_AJ_T0079709.1 MGP_AJ_G0031152.1 mouse_genomes_project 6 116219046 116250524 - MGP_AJ_P0079709 protein_coding unknown_likely_coding MGP_AJ_T0079710.1 MGP_AJ_G0031152.1 mouse_genomes_project 6 116220929 116238000 - MGP_AJ_P0079710 protein_coding protein_coding MGP_AJ_T0015653.1 MGP_AJ_G0013748.1 mouse_genomes_project 6 137813907 137814507 - processed_pseudogene processed_pseudogene MGP_AJ_T0015465.1 MGP_AJ_G0013560.1 mouse_genomes_project 6 82890309 82890820 + processed_pseudogene processed_pseudogene MGP_AJ_T0008623.1 MGP_AJ_G0006967.1 mouse_genomes_project 6 53428922 53504689 - Gm8239 lincRNA lincRNA MGP_AJ_T0002116.1 MGP_AJ_G0002029.1 mouse_genomes_project 6 110357021 110359544 + TEC TEC MGP_AJ_T0078835.1 MGP_AJ_G0030980.1 mouse_genomes_project 6 86781139 86787126 - MGP_AJ_P0078835 Abtb1 protein_coding protein_coding MGP_AJ_T0078836.1 MGP_AJ_G0030980.1 mouse_genomes_project 6 86781149 86787120 - MGP_AJ_P0078836 Abtb1 protein_coding nonsense_mediated_decay MGP_AJ_T0078837.1 MGP_AJ_G0030980.1 mouse_genomes_project 6 86781373 86787210 - MGP_AJ_P0078837 Abtb1 protein_coding nonsense_mediated_decay MGP_AJ_T0078838.1 MGP_AJ_G0030980.1 mouse_genomes_project 6 86781503 86783941 - Abtb1 protein_coding retained_intron MGP_AJ_T0078839.1 MGP_AJ_G0030980.1 mouse_genomes_project 6 86781648 86784092 - MGP_AJ_P0078839 Abtb1 protein_coding nonsense_mediated_decay MGP_AJ_T0078840.1 MGP_AJ_G0030980.1 mouse_genomes_project 6 86781910 86784306 - MGP_AJ_P0078840 Abtb1 protein_coding nonsense_mediated_decay MGP_AJ_T0078841.1 MGP_AJ_G0030980.1 mouse_genomes_project 6 86783340 86784381 - MGP_AJ_P0078841 Abtb1 protein_coding nonsense_mediated_decay MGP_AJ_T0078842.1 MGP_AJ_G0030980.1 mouse_genomes_project 6 86783679 86787092 - MGP_AJ_P0078842 Abtb1 protein_coding nonsense_mediated_decay MGP_AJ_T0078843.1 MGP_AJ_G0030980.1 mouse_genomes_project 6 86783882 86784815 - Abtb1 protein_coding retained_intron MGP_AJ_T0078844.1 MGP_AJ_G0030980.1 mouse_genomes_project 6 86784070 86787108 - MGP_AJ_P0078844 Abtb1 protein_coding nonsense_mediated_decay MGP_AJ_T0078845.1 MGP_AJ_G0030980.1 mouse_genomes_project 6 86784243 86787056 - Abtb1 protein_coding retained_intron MGP_AJ_T0078846.1 MGP_AJ_G0030980.1 mouse_genomes_project 6 86784890 86787161 - MGP_AJ_P0078846 Abtb1 protein_coding nonsense_mediated_decay MGP_AJ_T0011674.1 MGP_AJ_G0009796.1 mouse_genomes_project 6 140990182 140990431 - Gm23775 misc_RNA misc_RNA MGP_AJ_T0001982.1 MGP_AJ_G0001895.1 mouse_genomes_project 6 47728670 47729636 + TEC TEC MGP_AJ_T0015241.1 MGP_AJ_G0013336.1 mouse_genomes_project 6 4626489 4626679 - processed_pseudogene processed_pseudogene MGP_AJ_T0011628.1 MGP_AJ_G0009750.1 mouse_genomes_project 6 14353482 14353668 + Gm28008 misc_RNA misc_RNA MGP_AJ_T0015484.1 MGP_AJ_G0013579.1 mouse_genomes_project 6 90341572 90341728 - processed_pseudogene processed_pseudogene MGP_AJ_T0076581.1 MGP_AJ_G0030464.1 mouse_genomes_project 6 20622446 20623346 - MGP_AJ_P0076581 Tas2r118 protein_coding protein_coding MGP_AJ_T0078684.1 MGP_AJ_G0030950.1 mouse_genomes_project 6 84760586 84915917 + MGP_AJ_P0078684 Aak1 protein_coding protein_coding MGP_AJ_T0078685.1 MGP_AJ_G0030950.1 mouse_genomes_project 6 84760601 84846068 + MGP_AJ_P0078685 Aak1 protein_coding protein_coding MGP_AJ_T0078686.1 MGP_AJ_G0030950.1 mouse_genomes_project 6 84760697 84861379 + Aak1 protein_coding retained_intron MGP_AJ_T0078687.1 MGP_AJ_G0030950.1 mouse_genomes_project 6 84761122 84905184 + MGP_AJ_P0078687 Aak1 protein_coding unknown_likely_coding MGP_AJ_T0078688.1 MGP_AJ_G0030950.1 mouse_genomes_project 6 84761122 84904543 + MGP_AJ_P0078688 Aak1 protein_coding protein_coding MGP_AJ_T0078689.1 MGP_AJ_G0030950.1 mouse_genomes_project 6 84762254 84846063 + Aak1 protein_coding processed_transcript MGP_AJ_T0078690.1 MGP_AJ_G0030950.1 mouse_genomes_project 6 84869142 84908575 + MGP_AJ_P0078690 Aak1 protein_coding nonsense_mediated_decay MGP_AJ_T0078691.1 MGP_AJ_G0030950.1 mouse_genomes_project 6 84877825 84908898 + Aak1 protein_coding processed_transcript MGP_AJ_T0078692.1 MGP_AJ_G0030950.1 mouse_genomes_project 6 84897943 84900708 + Aak1 protein_coding retained_intron MGP_AJ_T0078693.1 MGP_AJ_G0030950.1 mouse_genomes_project 6 84907689 84909354 + Aak1 protein_coding processed_transcript MGP_AJ_T0005054.1 MGP_AJ_G0004312.1 mouse_genomes_project 6 111139398 111149119 - antisense antisense MGP_AJ_T0005055.1 MGP_AJ_G0004312.1 mouse_genomes_project 6 111139629 111149105 - antisense antisense MGP_AJ_T0005056.1 MGP_AJ_G0004312.1 mouse_genomes_project 6 111142368 111149138 - antisense antisense MGP_AJ_T0005057.1 MGP_AJ_G0004312.1 mouse_genomes_project 6 111142744 111149261 - antisense antisense MGP_AJ_T0015251.1 MGP_AJ_G0013346.1 mouse_genomes_project 6 9741644 9742647 - processed_pseudogene processed_pseudogene MGP_AJ_T0079859.1 MGP_AJ_G0031175.1 mouse_genomes_project 6 118660462 118683194 - MGP_AJ_P0079859 Cecr5 protein_coding protein_coding MGP_AJ_T0079860.1 MGP_AJ_G0031175.1 mouse_genomes_project 6 118670969 118683179 - Cecr5 protein_coding retained_intron MGP_AJ_T0079861.1 MGP_AJ_G0031175.1 mouse_genomes_project 6 118671848 118683165 - Cecr5 protein_coding retained_intron MGP_AJ_T0079862.1 MGP_AJ_G0031175.1 mouse_genomes_project 6 118681842 118683177 - Cecr5 protein_coding retained_intron MGP_AJ_T0001914.1 MGP_AJ_G0001827.1 mouse_genomes_project 6 1967859 1972211 - TEC TEC MGP_AJ_T0000318.1 MGP_AJ_G0000262.1 mouse_genomes_project 6 68152250 68152809 - IG_V_pseudogene IG_V_pseudogene MGP_AJ_T0015289.1 MGP_AJ_G0013384.1 mouse_genomes_project 6 27395399 27395630 + processed_pseudogene processed_pseudogene MGP_AJ_T0098711.1 MGP_AJ_G0036695.1 mouse_genomes_project 6 92937642 92937785 - Gm24601 rRNA rRNA MGP_AJ_T0080099.1 MGP_AJ_G0031233.1 mouse_genomes_project 6 123230226 123231734 - Grcc10 protein_coding processed_transcript MGP_AJ_T0080100.1 MGP_AJ_G0031233.1 mouse_genomes_project 6 123230226 123232413 - MGP_AJ_P0080100 Grcc10 protein_coding protein_coding MGP_AJ_T0080101.1 MGP_AJ_G0031233.1 mouse_genomes_project 6 123230229 123232104 - Grcc10 protein_coding retained_intron MGP_AJ_T0080102.1 MGP_AJ_G0031233.1 mouse_genomes_project 6 123230230 123231754 - Grcc10 protein_coding retained_intron MGP_AJ_T0002560.1 MGP_AJ_G0002462.1 mouse_genomes_project 6 38295871 38295921 + MGP_AJ_P0002560 Trbj1-3 TR_J_gene TR_J_gene MGP_AJ_T0002561.1 MGP_AJ_G0002462.1 mouse_genomes_project 6 38295871 38295925 + Trbj1-3 TR_J_gene processed_transcript MGP_AJ_T0004896.1 MGP_AJ_G0004207.1 mouse_genomes_project 6 2721761 2735246 - 1700019G24Rik antisense antisense MGP_AJ_T0077420.1 MGP_AJ_G0030663.1 mouse_genomes_project 6 45184903 45210146 + MGP_AJ_P0077420 Krba1 protein_coding protein_coding MGP_AJ_T0077421.1 MGP_AJ_G0030663.1 mouse_genomes_project 6 45184931 45207500 + MGP_AJ_P0077421 Krba1 protein_coding protein_coding MGP_AJ_T0077422.1 MGP_AJ_G0030663.1 mouse_genomes_project 6 45184947 45190002 + Krba1 protein_coding retained_intron MGP_AJ_T0077423.1 MGP_AJ_G0030663.1 mouse_genomes_project 6 45184949 45207495 + MGP_AJ_P0077423 Krba1 protein_coding protein_coding MGP_AJ_T0077424.1 MGP_AJ_G0030663.1 mouse_genomes_project 6 45184975 45210146 + MGP_AJ_P0077424 Krba1 protein_coding protein_coding MGP_AJ_T0077425.1 MGP_AJ_G0030663.1 mouse_genomes_project 6 45185015 45192797 + Krba1 protein_coding processed_transcript MGP_AJ_T0077426.1 MGP_AJ_G0030663.1 mouse_genomes_project 6 45185183 45208062 + MGP_AJ_P0077426 Krba1 protein_coding protein_coding MGP_AJ_T0077427.1 MGP_AJ_G0030663.1 mouse_genomes_project 6 45193372 45197871 + Krba1 protein_coding processed_transcript MGP_AJ_T0077428.1 MGP_AJ_G0030663.1 mouse_genomes_project 6 45198532 45210146 + Krba1 protein_coding retained_intron MGP_AJ_T0077429.1 MGP_AJ_G0030663.1 mouse_genomes_project 6 45202669 45210382 + Krba1 protein_coding retained_intron MGP_AJ_T0100074.1 MGP_AJ_G0038040.1 mouse_genomes_project 6 15383477 15383584 + Gm23648 snRNA snRNA MGP_AJ_T0080204.1 MGP_AJ_G0031251.1 mouse_genomes_project 6 123490572 123517772 + Zfp384 protein_coding retained_intron MGP_AJ_T0080205.1 MGP_AJ_G0031251.1 mouse_genomes_project 6 123490599 123519756 + MGP_AJ_P0080205 Zfp384 protein_coding protein_coding MGP_AJ_T0080206.1 MGP_AJ_G0031251.1 mouse_genomes_project 6 123490647 123519756 + Zfp384 protein_coding retained_intron MGP_AJ_T0080207.1 MGP_AJ_G0031251.1 mouse_genomes_project 6 123490658 123519984 + MGP_AJ_P0080207 Zfp384 protein_coding protein_coding MGP_AJ_T0080208.1 MGP_AJ_G0031251.1 mouse_genomes_project 6 123490697 123513502 + Zfp384 protein_coding processed_transcript MGP_AJ_T0080209.1 MGP_AJ_G0031251.1 mouse_genomes_project 6 123490704 123519879 + MGP_AJ_P0080209 Zfp384 protein_coding protein_coding MGP_AJ_T0080210.1 MGP_AJ_G0031251.1 mouse_genomes_project 6 123491091 123519989 + MGP_AJ_P0080210 Zfp384 protein_coding protein_coding MGP_AJ_T0080211.1 MGP_AJ_G0031251.1 mouse_genomes_project 6 123491135 123506246 + Zfp384 protein_coding processed_transcript MGP_AJ_T0080212.1 MGP_AJ_G0031251.1 mouse_genomes_project 6 123491137 123506392 + MGP_AJ_P0080212 Zfp384 protein_coding protein_coding MGP_AJ_T0080213.1 MGP_AJ_G0031251.1 mouse_genomes_project 6 123491157 123519756 + MGP_AJ_P0080213 Zfp384 protein_coding protein_coding MGP_AJ_T0080214.1 MGP_AJ_G0031251.1 mouse_genomes_project 6 123491158 123519756 + MGP_AJ_P0080214 Zfp384 protein_coding protein_coding MGP_AJ_T0080215.1 MGP_AJ_G0031251.1 mouse_genomes_project 6 123491167 123514385 + Zfp384 protein_coding retained_intron MGP_AJ_T0080216.1 MGP_AJ_G0031251.1 mouse_genomes_project 6 123491227 123519756 + MGP_AJ_P0080216 Zfp384 protein_coding protein_coding MGP_AJ_T0080217.1 MGP_AJ_G0031251.1 mouse_genomes_project 6 123491814 123519756 + MGP_AJ_P0080217 Zfp384 protein_coding protein_coding MGP_AJ_T0080218.1 MGP_AJ_G0031251.1 mouse_genomes_project 6 123506265 123514381 + Zfp384 protein_coding retained_intron MGP_AJ_T0080219.1 MGP_AJ_G0031251.1 mouse_genomes_project 6 123512001 123519936 + Zfp384 protein_coding retained_intron MGP_AJ_T0101347.1 MGP_AJ_G0039313.1 mouse_genomes_project 6 56202382 56202514 + Gm22367 snoRNA snoRNA MGP_AJ_T0078435.1 MGP_AJ_G0030904.1 mouse_genomes_project 6 81448242 81461733 - MGP_AJ_P0078435 Clec4f protein_coding protein_coding MGP_AJ_T0078436.1 MGP_AJ_G0030904.1 mouse_genomes_project 6 81448917 81461667 - Clec4f protein_coding processed_transcript MGP_AJ_T0015639.1 MGP_AJ_G0013734.1 mouse_genomes_project 6 131508603 131508980 - processed_pseudogene processed_pseudogene MGP_AJ_T0001979.1 MGP_AJ_G0001892.1 mouse_genomes_project 6 43517174 43520924 + TEC TEC MGP_AJ_T0002681.1 MGP_AJ_G0002562.1 mouse_genomes_project 6 37943010 37943715 + MGP_AJ_P0002681 Trbv20 TR_V_gene TR_V_gene MGP_AJ_T0078055.1 MGP_AJ_G0030831.1 mouse_genomes_project 6 69304761 69351488 - MGP_AJ_P0078055 Kdm3a protein_coding protein_coding MGP_AJ_T0078056.1 MGP_AJ_G0030831.1 mouse_genomes_project 6 69304763 69351269 - MGP_AJ_P0078056 Kdm3a protein_coding protein_coding MGP_AJ_T0078057.1 MGP_AJ_G0030831.1 mouse_genomes_project 6 69304826 69351573 - MGP_AJ_P0078057 Kdm3a protein_coding protein_coding MGP_AJ_T0078058.1 MGP_AJ_G0030831.1 mouse_genomes_project 6 69305917 69307722 - Kdm3a protein_coding retained_intron MGP_AJ_T0078059.1 MGP_AJ_G0030831.1 mouse_genomes_project 6 69306346 69308361 - Kdm3a protein_coding retained_intron MGP_AJ_T0078060.1 MGP_AJ_G0030831.1 mouse_genomes_project 6 69309751 69312950 - Kdm3a protein_coding retained_intron MGP_AJ_T0078061.1 MGP_AJ_G0030831.1 mouse_genomes_project 6 69310396 69327767 - Kdm3a protein_coding processed_transcript MGP_AJ_T0078062.1 MGP_AJ_G0030831.1 mouse_genomes_project 6 69312739 69315210 - Kdm3a protein_coding retained_intron MGP_AJ_T0078063.1 MGP_AJ_G0030831.1 mouse_genomes_project 6 69315116 69351269 - MGP_AJ_P0078063 Kdm3a protein_coding protein_coding MGP_AJ_T0078064.1 MGP_AJ_G0030831.1 mouse_genomes_project 6 69315217 69316946 - Kdm3a protein_coding retained_intron MGP_AJ_T0078065.1 MGP_AJ_G0030831.1 mouse_genomes_project 6 69316513 69330585 - MGP_AJ_P0078065 Kdm3a protein_coding nonsense_mediated_decay MGP_AJ_T0078066.1 MGP_AJ_G0030831.1 mouse_genomes_project 6 69318533 69340253 - Kdm3a protein_coding retained_intron MGP_AJ_T0078067.1 MGP_AJ_G0030831.1 mouse_genomes_project 6 69318922 69319771 - Kdm3a protein_coding processed_transcript MGP_AJ_T0078068.1 MGP_AJ_G0030831.1 mouse_genomes_project 6 69330326 69339976 - Kdm3a protein_coding processed_transcript MGP_AJ_T0015454.1 MGP_AJ_G0013549.1 mouse_genomes_project 6 79172544 79172997 - processed_pseudogene processed_pseudogene MGP_AJ_T0077630.1 MGP_AJ_G0030710.1 mouse_genomes_project 6 48998876 49049185 - MGP_AJ_P0077630 Gm28308 protein_coding protein_coding MGP_AJ_T0002138.1 MGP_AJ_G0002050.1 mouse_genomes_project 6 123566533 123567126 + TEC TEC MGP_AJ_T0080777.1 MGP_AJ_G0031410.1 mouse_genomes_project 6 136177213 136324897 + Ptpro protein_coding retained_intron MGP_AJ_T0080778.1 MGP_AJ_G0031410.1 mouse_genomes_project 6 136177228 136409573 + MGP_AJ_P0080778 Ptpro protein_coding protein_coding MGP_AJ_T0080779.1 MGP_AJ_G0031410.1 mouse_genomes_project 6 136177359 136409573 + MGP_AJ_P0080779 Ptpro protein_coding protein_coding MGP_AJ_T0080780.1 MGP_AJ_G0031410.1 mouse_genomes_project 6 136358311 136409579 + MGP_AJ_P0080780 Ptpro protein_coding protein_coding MGP_AJ_T0080781.1 MGP_AJ_G0031410.1 mouse_genomes_project 6 136358327 136409579 + MGP_AJ_P0080781 Ptpro protein_coding protein_coding MGP_AJ_T0080782.1 MGP_AJ_G0031410.1 mouse_genomes_project 6 136358349 136361857 + Ptpro protein_coding retained_intron MGP_AJ_T0080783.1 MGP_AJ_G0031410.1 mouse_genomes_project 6 136398954 136408650 + Ptpro protein_coding processed_transcript MGP_AJ_T0080784.1 MGP_AJ_G0031410.1 mouse_genomes_project 6 136400091 136408968 + Ptpro protein_coding processed_transcript MGP_AJ_T0000299.1 MGP_AJ_G0000243.1 mouse_genomes_project 6 66450857 66451160 + IG_V_pseudogene IG_V_pseudogene MGP_AJ_T0015455.1 MGP_AJ_G0013550.1 mouse_genomes_project 6 79615015 79615706 - processed_pseudogene processed_pseudogene MGP_AJ_T0101323.1 MGP_AJ_G0039289.1 mouse_genomes_project 6 5263829 5263950 - Gm26075 snoRNA snoRNA MGP_AJ_T0102038.1 MGP_AJ_G0039833.1 mouse_genomes_project 6 60088604 60091812 - transcribed_unprocessed_pseudogene processed_transcript MGP_AJ_T0102039.1 MGP_AJ_G0039833.1 mouse_genomes_project 6 60088954 60090365 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_AJ_T0001915.1 MGP_AJ_G0001828.1 mouse_genomes_project 6 2030935 2032761 + TEC TEC MGP_AJ_T0011664.1 MGP_AJ_G0009786.1 mouse_genomes_project 6 109701443 109701739 + Gm24005 misc_RNA misc_RNA MGP_AJ_T0015316.1 MGP_AJ_G0013411.1 mouse_genomes_project 6 40013197 40013619 + processed_pseudogene processed_pseudogene MGP_AJ_T0077778.1 MGP_AJ_G0030745.1 mouse_genomes_project 6 52693042 52830481 + MGP_AJ_P0077778 Ccdc129 protein_coding protein_coding MGP_AJ_T0077779.1 MGP_AJ_G0030745.1 mouse_genomes_project 6 52744976 52830594 + Ccdc129 protein_coding processed_transcript MGP_AJ_T0002081.1 MGP_AJ_G0001994.1 mouse_genomes_project 6 89744235 89745911 - TEC TEC MGP_AJ_T0077189.1 MGP_AJ_G0030580.1 mouse_genomes_project 6 37187350 37210815 + MGP_AJ_P0077189 Wee2 protein_coding protein_coding MGP_AJ_T0077190.1 MGP_AJ_G0030580.1 mouse_genomes_project 6 37198191 37222481 + MGP_AJ_P0077190 Wee2 protein_coding protein_coding MGP_AJ_T0077191.1 MGP_AJ_G0030580.1 mouse_genomes_project 6 37198265 37199483 + MGP_AJ_P0077191 Wee2 protein_coding protein_coding MGP_AJ_T0015570.1 MGP_AJ_G0013665.1 mouse_genomes_project 6 119874948 119875355 - processed_pseudogene processed_pseudogene MGP_AJ_T0005061.1 MGP_AJ_G0004316.1 mouse_genomes_project 6 111719489 111720450 - Gm43964 antisense antisense MGP_AJ_T0005031.1 MGP_AJ_G0004299.1 mouse_genomes_project 6 88729451 88730550 + Gm44123 antisense antisense MGP_AJ_T0002149.1 MGP_AJ_G0002061.1 mouse_genomes_project 6 127625197 127625394 - TEC TEC MGP_AJ_T0077268.1 MGP_AJ_G0030618.1 mouse_genomes_project 6 38993816 39011387 + MGP_AJ_P0077268 Casp2 protein_coding protein_coding MGP_AJ_T0077269.1 MGP_AJ_G0030618.1 mouse_genomes_project 6 38993887 38998002 + Casp2 protein_coding retained_intron MGP_AJ_T0077270.1 MGP_AJ_G0030618.1 mouse_genomes_project 6 38993951 39009371 + MGP_AJ_P0077270 Casp2 protein_coding nonsense_mediated_decay MGP_AJ_T0077271.1 MGP_AJ_G0030618.1 mouse_genomes_project 6 38996222 38996862 + Casp2 protein_coding processed_transcript MGP_AJ_T0077272.1 MGP_AJ_G0030618.1 mouse_genomes_project 6 38996841 38998487 + Casp2 protein_coding retained_intron MGP_AJ_T0077273.1 MGP_AJ_G0030618.1 mouse_genomes_project 6 38998164 39008776 + Casp2 protein_coding processed_transcript MGP_AJ_T0077274.1 MGP_AJ_G0030618.1 mouse_genomes_project 6 39005365 39009412 + Casp2 protein_coding retained_intron MGP_AJ_T0077275.1 MGP_AJ_G0030618.1 mouse_genomes_project 6 39008515 39009369 + Casp2 protein_coding processed_transcript MGP_AJ_T0077276.1 MGP_AJ_G0030618.1 mouse_genomes_project 6 39008659 39009520 + Casp2 protein_coding processed_transcript MGP_AJ_T0077277.1 MGP_AJ_G0030618.1 mouse_genomes_project 6 39008685 39009646 + Casp2 protein_coding processed_transcript MGP_AJ_T0078724.1 MGP_AJ_G0030958.1 mouse_genomes_project 6 85342399 85351815 + MGP_AJ_P0078724 Bmp10 protein_coding protein_coding MGP_AJ_T0015497.1 MGP_AJ_G0013592.1 mouse_genomes_project 6 94025739 94026928 - processed_pseudogene processed_pseudogene MGP_AJ_T0008709.1 MGP_AJ_G0007034.1 mouse_genomes_project 6 103740334 103744874 - Gm15631 lincRNA lincRNA MGP_AJ_T0079277.1 MGP_AJ_G0031073.1 mouse_genomes_project 6 108718916 109637640 + MGP_AJ_P0079277 Grm7 protein_coding protein_coding MGP_AJ_T0079278.1 MGP_AJ_G0031073.1 mouse_genomes_project 6 108718916 109569429 + MGP_AJ_P0079278 Grm7 protein_coding nonsense_mediated_decay MGP_AJ_T0079279.1 MGP_AJ_G0031073.1 mouse_genomes_project 6 108718917 109638803 + MGP_AJ_P0079279 Grm7 protein_coding protein_coding MGP_AJ_T0079280.1 MGP_AJ_G0031073.1 mouse_genomes_project 6 109568053 109572265 + MGP_AJ_P0079280 Grm7 protein_coding protein_coding MGP_AJ_T0079281.1 MGP_AJ_G0031073.1 mouse_genomes_project 6 109568082 109574616 + MGP_AJ_P0079281 Grm7 protein_coding protein_coding MGP_AJ_T0098705.1 MGP_AJ_G0036689.1 mouse_genomes_project 6 20290339 20290472 - Gm24217 rRNA rRNA MGP_AJ_T0080237.1 MGP_AJ_G0031254.1 mouse_genomes_project 6 123550884 123565569 + MGP_AJ_P0080237 Lpar5 protein_coding protein_coding MGP_AJ_T0080238.1 MGP_AJ_G0031254.1 mouse_genomes_project 6 123554287 123564905 + MGP_AJ_P0080238 Lpar5 protein_coding protein_coding MGP_AJ_T0080239.1 MGP_AJ_G0031254.1 mouse_genomes_project 6 123554287 123565569 + MGP_AJ_P0080239 Lpar5 protein_coding protein_coding MGP_AJ_T0077201.1 MGP_AJ_G0030584.1 mouse_genomes_project 6 37270343 37275028 - MGP_AJ_P0077201 Prss37 protein_coding protein_coding MGP_AJ_T0077202.1 MGP_AJ_G0030584.1 mouse_genomes_project 6 37274688 37275003 - Prss37 protein_coding processed_transcript MGP_AJ_T0080944.1 MGP_AJ_G0031440.1 mouse_genomes_project 6 141429217 141477450 - MGP_AJ_P0080944 Gys2 protein_coding protein_coding MGP_AJ_T0080945.1 MGP_AJ_G0031440.1 mouse_genomes_project 6 141429221 141430224 - MGP_AJ_P0080945 Gys2 protein_coding protein_coding MGP_AJ_T0002104.1 MGP_AJ_G0002017.1 mouse_genomes_project 6 99427532 99430399 - TEC TEC MGP_AJ_T0100117.1 MGP_AJ_G0038083.1 mouse_genomes_project 6 118675951 118676053 + Gm24391 snRNA snRNA MGP_AJ_T0015383.1 MGP_AJ_G0013478.1 mouse_genomes_project 6 62207402 62207834 + processed_pseudogene processed_pseudogene MGP_AJ_T0080578.1 MGP_AJ_G0031342.1 mouse_genomes_project 6 129898066 129923412 - MGP_AJ_P0080578 Klra2 protein_coding protein_coding MGP_AJ_T0080579.1 MGP_AJ_G0031342.1 mouse_genomes_project 6 129898839 129923412 - MGP_AJ_P0080579 Klra2 protein_coding protein_coding MGP_AJ_T0015249.1 MGP_AJ_G0013344.1 mouse_genomes_project 6 9257788 9259490 + processed_pseudogene processed_pseudogene MGP_AJ_T0102692.1 MGP_AJ_G0040434.1 mouse_genomes_project 6 55500367 55501292 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0080627.1 MGP_AJ_G0031374.1 mouse_genomes_project 6 131766621 131767622 - MGP_AJ_P0080627 Tas2r140 protein_coding protein_coding MGP_AJ_T0080940.1 MGP_AJ_G0031439.1 mouse_genomes_project 6 141420107 141425237 + MGP_AJ_P0080940 Spx protein_coding unknown_likely_coding MGP_AJ_T0080941.1 MGP_AJ_G0031439.1 mouse_genomes_project 6 141420107 141425237 + MGP_AJ_P0080941 Spx protein_coding protein_coding MGP_AJ_T0080942.1 MGP_AJ_G0031439.1 mouse_genomes_project 6 141420678 141426396 + Spx protein_coding retained_intron MGP_AJ_T0080943.1 MGP_AJ_G0031439.1 mouse_genomes_project 6 141421187 141426396 + Spx protein_coding retained_intron MGP_AJ_T0077334.1 MGP_AJ_G0030638.1 mouse_genomes_project 6 39627284 39628217 + MGP_AJ_P0077334 Olfr448 protein_coding protein_coding MGP_AJ_T0015609.1 MGP_AJ_G0013704.1 mouse_genomes_project 6 127204157 127204647 - processed_pseudogene processed_pseudogene MGP_AJ_T0080051.1 MGP_AJ_G0031224.1 mouse_genomes_project 6 122821653 122855056 - MGP_AJ_P0080051 Clstn3 protein_coding protein_coding MGP_AJ_T0080052.1 MGP_AJ_G0031224.1 mouse_genomes_project 6 122822206 122824406 - Clstn3 protein_coding processed_transcript MGP_AJ_T0080053.1 MGP_AJ_G0031224.1 mouse_genomes_project 6 122827674 122829782 - Clstn3 protein_coding retained_intron MGP_AJ_T0080054.1 MGP_AJ_G0031224.1 mouse_genomes_project 6 122829806 122840704 - Clstn3 protein_coding retained_intron MGP_AJ_T0080055.1 MGP_AJ_G0031224.1 mouse_genomes_project 6 122846460 122848457 - Clstn3 protein_coding processed_transcript MGP_AJ_T0080056.1 MGP_AJ_G0031224.1 mouse_genomes_project 6 122852181 122854673 - MGP_AJ_P0080056 Clstn3 protein_coding protein_coding MGP_AJ_T0079201.1 MGP_AJ_G0031058.1 mouse_genomes_project 6 99252113 99479240 - MGP_AJ_P0079201 Pdzrn3 protein_coding protein_coding MGP_AJ_T0079202.1 MGP_AJ_G0031058.1 mouse_genomes_project 6 99259399 99456675 - Pdzrn3 protein_coding processed_transcript MGP_AJ_T0079203.1 MGP_AJ_G0031058.1 mouse_genomes_project 6 99272389 99301726 - Pdzrn3 protein_coding retained_intron MGP_AJ_T0079204.1 MGP_AJ_G0031058.1 mouse_genomes_project 6 99282412 99478685 - Pdzrn3 protein_coding processed_transcript MGP_AJ_T0102728.1 MGP_AJ_G0040469.1 mouse_genomes_project 6 131467894 131468886 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0015652.1 MGP_AJ_G0013747.1 mouse_genomes_project 6 135544658 135544937 - processed_pseudogene processed_pseudogene MGP_AJ_T0001975.1 MGP_AJ_G0001888.1 mouse_genomes_project 6 42833761 42836944 + TEC TEC MGP_AJ_T0008755.1 MGP_AJ_G0007073.1 mouse_genomes_project 6 130705847 130706713 + Gm43974 lincRNA lincRNA MGP_AJ_T0008773.1 MGP_AJ_G0007085.1 mouse_genomes_project 6 141992009 141994019 + A930014E10Rik lincRNA lincRNA MGP_AJ_T0001952.1 MGP_AJ_G0001865.1 mouse_genomes_project 6 36769557 36771271 + TEC TEC MGP_AJ_T0080573.1 MGP_AJ_G0031339.1 mouse_genomes_project 6 128849719 128864442 - MGP_AJ_P0080573 protein_coding protein_coding MGP_AJ_T0080576.1 MGP_AJ_G0031339.1 mouse_genomes_project 6 128849823 128864370 - MGP_AJ_P0080576 protein_coding protein_coding MGP_AJ_T0000172.1 MGP_AJ_G0000130.1 mouse_genomes_project 6 66187664 66188431 - MGP_AJ_P0000172 Igkv1-88 IG_V_gene IG_V_gene MGP_AJ_T0002665.1 MGP_AJ_G0002547.1 mouse_genomes_project 6 37642067 37642724 + MGP_AJ_P0002665 Trbv1 TR_V_gene TR_V_gene MGP_AJ_T0000270.1 MGP_AJ_G0000214.1 mouse_genomes_project 6 64853331 64853786 - IG_V_pseudogene IG_V_pseudogene MGP_AJ_T0002033.1 MGP_AJ_G0001946.1 mouse_genomes_project 6 78197259 78199739 + TEC TEC MGP_AJ_T0099079.1 MGP_AJ_G0037052.1 mouse_genomes_project 6 111877996 111879874 - Gm44167 sense_intronic sense_intronic MGP_AJ_T0101340.1 MGP_AJ_G0039306.1 mouse_genomes_project 6 49494212 49494334 - Gm24355 snoRNA snoRNA MGP_AJ_T0101373.1 MGP_AJ_G0039339.1 mouse_genomes_project 6 114472650 114472780 - Gm23527 snoRNA snoRNA MGP_AJ_T0008739.1 MGP_AJ_G0007062.1 mouse_genomes_project 6 125774944 125777956 - Gm43635 lincRNA lincRNA MGP_AJ_T0005032.1 MGP_AJ_G0004300.1 mouse_genomes_project 6 89207313 89207857 - Gm14573 antisense antisense MGP_AJ_T0015358.1 MGP_AJ_G0013453.1 mouse_genomes_project 6 55076943 55078115 + processed_pseudogene processed_pseudogene MGP_AJ_T0076520.1 MGP_AJ_G0030451.1 mouse_genomes_project 6 15508433 15529220 + MGP_AJ_P0076520 Ankrd7 protein_coding protein_coding MGP_AJ_T0076521.1 MGP_AJ_G0030451.1 mouse_genomes_project 6 15508465 15529216 + MGP_AJ_P0076521 Ankrd7 protein_coding protein_coding MGP_AJ_T0002091.1 MGP_AJ_G0002004.1 mouse_genomes_project 6 91539056 91539539 - TEC TEC MGP_AJ_T0080886.1 MGP_AJ_G0031425.1 mouse_genomes_project 6 139683313 139712250 + MGP_AJ_P0080886 Gm11077 protein_coding protein_coding MGP_AJ_T0002675.1 MGP_AJ_G0002556.1 mouse_genomes_project 6 37884398 37884837 + MGP_AJ_P0002675 Trbv13-3 TR_V_gene TR_V_gene MGP_AJ_T0078207.1 MGP_AJ_G0030856.1 mouse_genomes_project 6 70721068 70915302 - MGP_AJ_P0078207 Dnah6 protein_coding protein_coding MGP_AJ_T0078208.1 MGP_AJ_G0030856.1 mouse_genomes_project 6 70721071 70915322 - MGP_AJ_P0078208 Dnah6 protein_coding protein_coding MGP_AJ_T0078209.1 MGP_AJ_G0030856.1 mouse_genomes_project 6 70721204 70913462 - MGP_AJ_P0078209 Dnah6 protein_coding protein_coding MGP_AJ_T0078210.1 MGP_AJ_G0030856.1 mouse_genomes_project 6 70785785 70833383 - Dnah6 protein_coding retained_intron MGP_AJ_T0076301.1 MGP_AJ_G0030411.1 mouse_genomes_project 6 2797866 2981424 - MGP_AJ_P0076301 Slc25a13 protein_coding protein_coding MGP_AJ_T0076302.1 MGP_AJ_G0030411.1 mouse_genomes_project 6 2797867 2981479 - MGP_AJ_P0076302 Slc25a13 protein_coding protein_coding MGP_AJ_T0076303.1 MGP_AJ_G0030411.1 mouse_genomes_project 6 2824620 2851513 - Slc25a13 protein_coding processed_transcript MGP_AJ_T0076304.1 MGP_AJ_G0030411.1 mouse_genomes_project 6 2872326 2936830 - Slc25a13 protein_coding processed_transcript MGP_AJ_T0076305.1 MGP_AJ_G0030411.1 mouse_genomes_project 6 2892659 2955539 - Slc25a13 protein_coding retained_intron MGP_AJ_T0079689.1 MGP_AJ_G0031149.1 mouse_genomes_project 6 115970135 115978131 + Zfp239 protein_coding processed_transcript MGP_AJ_T0079690.1 MGP_AJ_G0031149.1 mouse_genomes_project 6 115971112 115978092 + Zfp239 protein_coding processed_transcript MGP_AJ_T0079691.1 MGP_AJ_G0031149.1 mouse_genomes_project 6 115971112 115980644 + MGP_AJ_P0079691 Zfp239 protein_coding protein_coding MGP_AJ_T0079692.1 MGP_AJ_G0031149.1 mouse_genomes_project 6 115971112 115980118 + MGP_AJ_P0079692 Zfp239 protein_coding protein_coding MGP_AJ_T0079693.1 MGP_AJ_G0031149.1 mouse_genomes_project 6 115971119 115977230 + Zfp239 protein_coding retained_intron MGP_AJ_T0079694.1 MGP_AJ_G0031149.1 mouse_genomes_project 6 115971119 115978087 + Zfp239 protein_coding processed_transcript MGP_AJ_T0079695.1 MGP_AJ_G0031149.1 mouse_genomes_project 6 115971119 115977820 + Zfp239 protein_coding processed_transcript MGP_AJ_T0002153.1 MGP_AJ_G0002065.1 mouse_genomes_project 6 131544140 131544453 + TEC TEC MGP_AJ_T0100083.1 MGP_AJ_G0038049.1 mouse_genomes_project 6 34825350 34825454 + Gm23231 snRNA snRNA MGP_AJ_T0102689.1 MGP_AJ_G0040431.1 mouse_genomes_project 6 55113755 55114649 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0077730.1 MGP_AJ_G0030732.1 mouse_genomes_project 6 51457707 51510350 + MGP_AJ_P0077730 Plekha8 protein_coding protein_coding MGP_AJ_T0000159.1 MGP_AJ_G0000121.1 mouse_genomes_project 6 65868563 65869036 + MGP_AJ_P0000159 Igkv12-98 IG_V_gene IG_V_gene MGP_AJ_T0000160.1 MGP_AJ_G0000121.1 mouse_genomes_project 6 65868563 65869036 + MGP_AJ_P0000160 Igkv12-98 IG_V_gene IG_V_gene MGP_AJ_T0077446.1 MGP_AJ_G0030666.1 mouse_genomes_project 6 45325180 45330053 + MGP_AJ_P0077446 Atp6v0e2 protein_coding protein_coding MGP_AJ_T0077447.1 MGP_AJ_G0030666.1 mouse_genomes_project 6 45325203 45328118 + Atp6v0e2 protein_coding retained_intron MGP_AJ_T0077448.1 MGP_AJ_G0030666.1 mouse_genomes_project 6 45325230 45330053 + MGP_AJ_P0077448 Atp6v0e2 protein_coding protein_coding MGP_AJ_T0081206.1 MGP_AJ_G0031483.1 mouse_genomes_project 6 148134346 148135008 + MGP_AJ_P0081206 protein_coding protein_coding MGP_AJ_T0102688.1 MGP_AJ_G0040430.1 mouse_genomes_project 6 55101535 55101640 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0015495.1 MGP_AJ_G0013590.1 mouse_genomes_project 6 93349307 93349658 - processed_pseudogene processed_pseudogene MGP_AJ_T0001959.1 MGP_AJ_G0001872.1 mouse_genomes_project 6 41831677 41835437 + TEC TEC MGP_AJ_T0002048.1 MGP_AJ_G0001961.1 mouse_genomes_project 6 84496035 84497972 + TEC TEC MGP_AJ_T0079998.1 MGP_AJ_G0031204.1 mouse_genomes_project 6 121222694 121237890 + MGP_AJ_P0079998 Necap1 protein_coding protein_coding MGP_AJ_T0079999.1 MGP_AJ_G0031204.1 mouse_genomes_project 6 121222769 121224283 + Necap1 protein_coding processed_transcript MGP_AJ_T0080000.1 MGP_AJ_G0031204.1 mouse_genomes_project 6 121222791 121230764 + Necap1 protein_coding retained_intron MGP_AJ_T0080001.1 MGP_AJ_G0031204.1 mouse_genomes_project 6 121222801 121229479 + Necap1 protein_coding retained_intron MGP_AJ_T0004919.1 MGP_AJ_G0004223.1 mouse_genomes_project 6 28982727 28995470 + Plxna4os3 antisense antisense MGP_AJ_T0004920.1 MGP_AJ_G0004223.1 mouse_genomes_project 6 28982811 28995462 + Plxna4os3 antisense antisense MGP_AJ_T0077966.1 MGP_AJ_G0030803.1 mouse_genomes_project 6 63609978 63623429 + MGP_AJ_P0077966 Mad2l1 protein_coding protein_coding MGP_AJ_T0077967.1 MGP_AJ_G0030803.1 mouse_genomes_project 6 63610369 63610765 + Mad2l1 protein_coding processed_transcript MGP_AJ_T0000272.1 MGP_AJ_G0000216.1 mouse_genomes_project 6 64901049 64901302 + IG_V_pseudogene IG_V_pseudogene MGP_AJ_T0002570.1 MGP_AJ_G0002470.1 mouse_genomes_project 6 38304883 38304932 + MGP_AJ_P0002570 Trbj2-4 TR_J_gene TR_J_gene MGP_AJ_T0001941.1 MGP_AJ_G0001854.1 mouse_genomes_project 6 26571054 26574666 - TEC TEC MGP_AJ_T0080501.1 MGP_AJ_G0031313.1 mouse_genomes_project 6 127841280 127849394 - MGP_AJ_P0080501 Cd69 protein_coding protein_coding MGP_AJ_T0080502.1 MGP_AJ_G0031313.1 mouse_genomes_project 6 127842214 127849324 - MGP_AJ_P0080502 Cd69 protein_coding protein_coding MGP_AJ_T0080503.1 MGP_AJ_G0031313.1 mouse_genomes_project 6 127843406 127849327 - Cd69 protein_coding retained_intron MGP_AJ_T0080504.1 MGP_AJ_G0031313.1 mouse_genomes_project 6 127844357 127849327 - Cd69 protein_coding retained_intron MGP_AJ_T0080505.1 MGP_AJ_G0031313.1 mouse_genomes_project 6 127845122 127849327 - Cd69 protein_coding retained_intron MGP_AJ_T0077307.1 MGP_AJ_G0030626.1 mouse_genomes_project 6 39185248 39186190 - MGP_AJ_P0077307 Olfr458 protein_coding protein_coding MGP_AJ_T0015400.1 MGP_AJ_G0013495.1 mouse_genomes_project 6 63587427 63588076 + processed_pseudogene processed_pseudogene MGP_AJ_T0015292.1 MGP_AJ_G0013387.1 mouse_genomes_project 6 30070718 30073236 - processed_pseudogene processed_pseudogene MGP_AJ_T0005000.1 MGP_AJ_G0004280.1 mouse_genomes_project 6 81906991 81919848 - Gm15475 antisense antisense MGP_AJ_T0015329.1 MGP_AJ_G0013424.1 mouse_genomes_project 6 45167902 45168773 - processed_pseudogene processed_pseudogene MGP_AJ_T0099083.1 MGP_AJ_G0037056.1 mouse_genomes_project 6 133725170 133727568 - Gm44366 sense_intronic sense_intronic MGP_AJ_T0076225.1 MGP_AJ_G0030397.1 mouse_genomes_project 6 710010 713642 + MGP_AJ_P0076225 Gngt1 protein_coding protein_coding MGP_AJ_T0076226.1 MGP_AJ_G0030397.1 mouse_genomes_project 6 710015 713108 + Gngt1 protein_coding retained_intron MGP_AJ_T0077946.1 MGP_AJ_G0030798.1 mouse_genomes_project 6 62454981 62523097 + MGP_AJ_P0077946 C130060K24Rik protein_coding protein_coding MGP_AJ_T0077947.1 MGP_AJ_G0030798.1 mouse_genomes_project 6 62455170 62528282 + MGP_AJ_P0077947 C130060K24Rik protein_coding protein_coding MGP_AJ_T0077948.1 MGP_AJ_G0030798.1 mouse_genomes_project 6 62510665 62523125 + MGP_AJ_P0077948 C130060K24Rik protein_coding protein_coding MGP_AJ_T0102677.1 MGP_AJ_G0040419.1 mouse_genomes_project 6 39838229 39842748 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0077218.1 MGP_AJ_G0030591.1 mouse_genomes_project 6 37646108 37652075 - MGP_AJ_P0077218 Prss58 protein_coding protein_coding MGP_AJ_T0015490.1 MGP_AJ_G0013585.1 mouse_genomes_project 6 92452017 92452408 + processed_pseudogene processed_pseudogene MGP_AJ_T0010747.1 MGP_AJ_G0008869.1 mouse_genomes_project 6 25650496 25650569 + Mir129-1 miRNA miRNA MGP_AJ_T0015433.1 MGP_AJ_G0013528.1 mouse_genomes_project 6 69402469 69403057 + processed_pseudogene processed_pseudogene MGP_AJ_T0078535.1 MGP_AJ_G0030922.1 mouse_genomes_project 6 83300535 83315133 + MGP_AJ_P0078535 Smyd5 protein_coding protein_coding MGP_AJ_T0078536.1 MGP_AJ_G0030922.1 mouse_genomes_project 6 83300548 83309048 + Smyd5 protein_coding retained_intron MGP_AJ_T0078537.1 MGP_AJ_G0030922.1 mouse_genomes_project 6 83300619 83301365 + Smyd5 protein_coding retained_intron MGP_AJ_T0078538.1 MGP_AJ_G0030922.1 mouse_genomes_project 6 83307849 83310661 + Smyd5 protein_coding retained_intron MGP_AJ_T0078539.1 MGP_AJ_G0030922.1 mouse_genomes_project 6 83310335 83314141 + Smyd5 protein_coding retained_intron MGP_AJ_T0078540.1 MGP_AJ_G0030922.1 mouse_genomes_project 6 83310430 83313658 + Smyd5 protein_coding processed_transcript MGP_AJ_T0078541.1 MGP_AJ_G0030922.1 mouse_genomes_project 6 83310445 83313895 + Smyd5 protein_coding retained_intron MGP_AJ_T0078542.1 MGP_AJ_G0030922.1 mouse_genomes_project 6 83311278 83314130 + Smyd5 protein_coding processed_transcript MGP_AJ_T0002049.1 MGP_AJ_G0001962.1 mouse_genomes_project 6 84569060 84571423 - TEC TEC MGP_AJ_T0102722.1 MGP_AJ_G0040463.1 mouse_genomes_project 6 129055800 129081462 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0002688.1 MGP_AJ_G0002566.1 mouse_genomes_project 6 38024695 38025183 + MGP_AJ_P0002688 Trbv29 TR_V_gene TR_V_gene MGP_AJ_T0002083.1 MGP_AJ_G0001996.1 mouse_genomes_project 6 89765852 89767795 - TEC TEC MGP_AJ_T0078344.1 MGP_AJ_G0030889.1 mouse_genomes_project 6 80906662 80910065 + MGP_AJ_P0078344 Mogs protein_coding protein_coding MGP_AJ_T0078345.1 MGP_AJ_G0030889.1 mouse_genomes_project 6 80907682 80908518 + Mogs protein_coding retained_intron MGP_AJ_T0002080.1 MGP_AJ_G0001993.1 mouse_genomes_project 6 89732496 89733522 - TEC TEC MGP_AJ_T0077652.1 MGP_AJ_G0030718.1 mouse_genomes_project 6 49077933 49081630 - MGP_AJ_P0077652 Hoxa11 protein_coding protein_coding MGP_AJ_T0077653.1 MGP_AJ_G0030718.1 mouse_genomes_project 6 49077937 49081615 - Hoxa11 protein_coding processed_transcript MGP_AJ_T0080626.1 MGP_AJ_G0031373.1 mouse_genomes_project 6 131743185 131744113 - MGP_AJ_P0080626 Tas2r103 protein_coding protein_coding MGP_AJ_T0080537.1 MGP_AJ_G0031324.1 mouse_genomes_project 6 128166918 128174283 + MGP_AJ_P0080537 Klrd1 protein_coding protein_coding MGP_AJ_T0080538.1 MGP_AJ_G0031324.1 mouse_genomes_project 6 128166918 128173981 + MGP_AJ_P0080538 Klrd1 protein_coding protein_coding MGP_AJ_T0080539.1 MGP_AJ_G0031324.1 mouse_genomes_project 6 128166946 128174278 + MGP_AJ_P0080539 Klrd1 protein_coding protein_coding MGP_AJ_T0080540.1 MGP_AJ_G0031324.1 mouse_genomes_project 6 128166961 128174125 + MGP_AJ_P0080540 Klrd1 protein_coding nonsense_mediated_decay MGP_AJ_T0080541.1 MGP_AJ_G0031324.1 mouse_genomes_project 6 128170366 128173965 + MGP_AJ_P0080541 Klrd1 protein_coding nonsense_mediated_decay MGP_AJ_T0080542.1 MGP_AJ_G0031324.1 mouse_genomes_project 6 128171542 128173964 + Klrd1 protein_coding retained_intron MGP_AJ_T0008657.1 MGP_AJ_G0006996.1 mouse_genomes_project 6 80664941 80668930 - 2310069B03Rik lincRNA lincRNA MGP_AJ_T0008658.1 MGP_AJ_G0006996.1 mouse_genomes_project 6 80665604 80668930 - 2310069B03Rik lincRNA lincRNA MGP_AJ_T0008659.1 MGP_AJ_G0006996.1 mouse_genomes_project 6 80666498 80668909 - 2310069B03Rik lincRNA lincRNA MGP_AJ_T0100127.1 MGP_AJ_G0038093.1 mouse_genomes_project 6 135116981 135117171 + Gm26105 snRNA snRNA MGP_AJ_T0077026.1 MGP_AJ_G0030547.1 mouse_genomes_project 6 33389147 33489112 - MGP_AJ_P0077026 Ptn protein_coding protein_coding MGP_AJ_T0077027.1 MGP_AJ_G0030547.1 mouse_genomes_project 6 33417549 33489071 - MGP_AJ_P0077027 Ptn protein_coding protein_coding MGP_AJ_T0004900.1 MGP_AJ_G0004210.1 mouse_genomes_project 6 5177693 5201177 - Gm16043 antisense antisense MGP_AJ_T0078285.1 MGP_AJ_G0030877.1 mouse_genomes_project 6 80735719 80818904 + MGP_AJ_P0078285 M1ap protein_coding protein_coding MGP_AJ_T0078286.1 MGP_AJ_G0030877.1 mouse_genomes_project 6 80815064 80819030 + MGP_AJ_P0078286 M1ap protein_coding protein_coding MGP_AJ_T0078287.1 MGP_AJ_G0030877.1 mouse_genomes_project 6 80816982 80818544 + M1ap protein_coding retained_intron MGP_AJ_T0008732.1 MGP_AJ_G0007055.1 mouse_genomes_project 6 119409263 119427489 - Gm44148 lincRNA lincRNA MGP_AJ_T0102732.1 MGP_AJ_G0040473.1 mouse_genomes_project 6 131620110 131621043 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0079458.1 MGP_AJ_G0031105.1 mouse_genomes_project 6 111796319 111800073 - MGP_AJ_P0079458 Ghrl protein_coding protein_coding MGP_AJ_T0079459.1 MGP_AJ_G0031105.1 mouse_genomes_project 6 111796319 111797893 - MGP_AJ_P0079459 Ghrl protein_coding protein_coding MGP_AJ_T0079460.1 MGP_AJ_G0031105.1 mouse_genomes_project 6 111796324 111799651 - MGP_AJ_P0079460 Ghrl protein_coding protein_coding MGP_AJ_T0079461.1 MGP_AJ_G0031105.1 mouse_genomes_project 6 111796332 111800041 - MGP_AJ_P0079461 Ghrl protein_coding protein_coding MGP_AJ_T0079462.1 MGP_AJ_G0031105.1 mouse_genomes_project 6 111796372 111799640 - MGP_AJ_P0079462 Ghrl protein_coding protein_coding MGP_AJ_T0079463.1 MGP_AJ_G0031105.1 mouse_genomes_project 6 111796450 111799622 - MGP_AJ_P0079463 Ghrl protein_coding protein_coding MGP_AJ_T0079464.1 MGP_AJ_G0031105.1 mouse_genomes_project 6 111799369 111799647 - Ghrl protein_coding retained_intron MGP_AJ_T0008589.1 MGP_AJ_G0006941.1 mouse_genomes_project 6 44884241 44912467 - lincRNA lincRNA MGP_AJ_T0000290.1 MGP_AJ_G0000234.1 mouse_genomes_project 6 65949862 65950550 - IG_V_pseudogene IG_V_pseudogene MGP_AJ_T0011655.1 MGP_AJ_G0009777.1 mouse_genomes_project 6 81395836 81396159 - Gm24990 misc_RNA misc_RNA MGP_AJ_T0098716.1 MGP_AJ_G0036700.1 mouse_genomes_project 6 139095506 139095617 - Gm24174 rRNA rRNA MGP_AJ_T0076845.1 MGP_AJ_G0030516.1 mouse_genomes_project 6 27325873 27369190 - MGP_AJ_P0076845 Cep41 protein_coding protein_coding MGP_AJ_T0076846.1 MGP_AJ_G0030516.1 mouse_genomes_project 6 27325875 27369134 - MGP_AJ_P0076846 Cep41 protein_coding nonsense_mediated_decay MGP_AJ_T0076847.1 MGP_AJ_G0030516.1 mouse_genomes_project 6 27326794 27369136 - MGP_AJ_P0076847 Cep41 protein_coding protein_coding MGP_AJ_T0076848.1 MGP_AJ_G0030516.1 mouse_genomes_project 6 27326795 27344622 - Cep41 protein_coding processed_transcript MGP_AJ_T0076849.1 MGP_AJ_G0030516.1 mouse_genomes_project 6 27327948 27329226 - Cep41 protein_coding retained_intron MGP_AJ_T0076850.1 MGP_AJ_G0030516.1 mouse_genomes_project 6 27330798 27336636 - Cep41 protein_coding retained_intron MGP_AJ_T0076851.1 MGP_AJ_G0030516.1 mouse_genomes_project 6 27336248 27368529 - MGP_AJ_P0076851 Cep41 protein_coding protein_coding MGP_AJ_T0076852.1 MGP_AJ_G0030516.1 mouse_genomes_project 6 27341294 27369117 - MGP_AJ_P0076852 Cep41 protein_coding protein_coding MGP_AJ_T0076853.1 MGP_AJ_G0030516.1 mouse_genomes_project 6 27341580 27355800 - MGP_AJ_P0076853 Cep41 protein_coding protein_coding MGP_AJ_T0076854.1 MGP_AJ_G0030516.1 mouse_genomes_project 6 27354354 27369141 - MGP_AJ_P0076854 Cep41 protein_coding protein_coding MGP_AJ_T0078905.1 MGP_AJ_G0030991.1 mouse_genomes_project 6 87869323 87870947 - MGP_AJ_P0078905 Vmn1r43 protein_coding protein_coding MGP_AJ_T0002082.1 MGP_AJ_G0001995.1 mouse_genomes_project 6 89763882 89765758 + TEC TEC MGP_AJ_T0015355.1 MGP_AJ_G0013450.1 mouse_genomes_project 6 50635335 50636092 + processed_pseudogene processed_pseudogene MGP_AJ_T0004975.1 MGP_AJ_G0004267.1 mouse_genomes_project 6 70358068 70365264 + Gm15401 antisense antisense MGP_AJ_T0004976.1 MGP_AJ_G0004267.1 mouse_genomes_project 6 70358617 70366147 + Gm15401 antisense antisense MGP_AJ_T0004977.1 MGP_AJ_G0004267.1 mouse_genomes_project 6 70365033 70366498 + Gm15401 antisense antisense MGP_AJ_T0002045.1 MGP_AJ_G0001958.1 mouse_genomes_project 6 84155737 84158097 - TEC TEC MGP_AJ_T0002161.1 MGP_AJ_G0002073.1 mouse_genomes_project 6 135740250 135740754 - TEC TEC MGP_AJ_T0015427.1 MGP_AJ_G0013522.1 mouse_genomes_project 6 67693059 67694853 + processed_pseudogene processed_pseudogene MGP_AJ_T0015420.1 MGP_AJ_G0013515.1 mouse_genomes_project 6 65444557 65445760 - processed_pseudogene processed_pseudogene MGP_AJ_T0079539.1 MGP_AJ_G0031118.1 mouse_genomes_project 6 113632958 113642573 + MGP_AJ_P0079539 Tsen2 protein_coding protein_coding MGP_AJ_T0079540.1 MGP_AJ_G0031118.1 mouse_genomes_project 6 113632958 113666891 + MGP_AJ_P0079540 Tsen2 protein_coding protein_coding MGP_AJ_T0079541.1 MGP_AJ_G0031118.1 mouse_genomes_project 6 113632996 113648043 + Tsen2 protein_coding processed_transcript MGP_AJ_T0079542.1 MGP_AJ_G0031118.1 mouse_genomes_project 6 113633000 113640662 + Tsen2 protein_coding retained_intron MGP_AJ_T0079543.1 MGP_AJ_G0031118.1 mouse_genomes_project 6 113662710 113666254 + Tsen2 protein_coding retained_intron MGP_AJ_T0002039.1 MGP_AJ_G0001952.1 mouse_genomes_project 6 80865553 80867086 - TEC TEC MGP_AJ_T0080645.1 MGP_AJ_G0031380.1 mouse_genomes_project 6 133277327 133400398 - MGP_AJ_P0080645 Lrp6 protein_coding protein_coding MGP_AJ_T0080646.1 MGP_AJ_G0031380.1 mouse_genomes_project 6 133281476 133302640 - Lrp6 protein_coding retained_intron MGP_AJ_T0080647.1 MGP_AJ_G0031380.1 mouse_genomes_project 6 133292995 133296337 - Lrp6 protein_coding retained_intron MGP_AJ_T0080648.1 MGP_AJ_G0031380.1 mouse_genomes_project 6 133293928 133299103 - Lrp6 protein_coding retained_intron MGP_AJ_T0080649.1 MGP_AJ_G0031380.1 mouse_genomes_project 6 133344837 133400450 - MGP_AJ_P0080649 Lrp6 protein_coding protein_coding MGP_AJ_T0080650.1 MGP_AJ_G0031380.1 mouse_genomes_project 6 133374442 133375391 - Lrp6 protein_coding retained_intron MGP_AJ_T0002725.1 MGP_AJ_G0002597.1 mouse_genomes_project 6 37838437 37838722 + TR_V_pseudogene TR_V_pseudogene MGP_AJ_T0000152.1 MGP_AJ_G0000116.1 mouse_genomes_project 6 65723069 65723567 + MGP_AJ_P0000152 Igkv16-104 IG_V_gene IG_V_gene MGP_AJ_T0010804.1 MGP_AJ_G0008926.1 mouse_genomes_project 6 118955779 118955876 - Gm25193 miRNA miRNA MGP_AJ_T0080828.1 MGP_AJ_G0031416.1 mouse_genomes_project 6 137318252 137536654 - MGP_AJ_P0080828 Lmo3 protein_coding protein_coding MGP_AJ_T0080829.1 MGP_AJ_G0031416.1 mouse_genomes_project 6 137319530 137376409 - MGP_AJ_P0080829 Lmo3 protein_coding protein_coding MGP_AJ_T0080830.1 MGP_AJ_G0031416.1 mouse_genomes_project 6 137320296 137379597 - MGP_AJ_P0080830 Lmo3 protein_coding nonsense_mediated_decay MGP_AJ_T0080831.1 MGP_AJ_G0031416.1 mouse_genomes_project 6 137320925 137377963 - MGP_AJ_P0080831 Lmo3 protein_coding protein_coding MGP_AJ_T0080832.1 MGP_AJ_G0031416.1 mouse_genomes_project 6 137320929 137377906 - MGP_AJ_P0080832 Lmo3 protein_coding protein_coding MGP_AJ_T0080833.1 MGP_AJ_G0031416.1 mouse_genomes_project 6 137321236 137382168 - MGP_AJ_P0080833 Lmo3 protein_coding protein_coding MGP_AJ_T0080834.1 MGP_AJ_G0031416.1 mouse_genomes_project 6 137332538 137377988 - MGP_AJ_P0080834 Lmo3 protein_coding protein_coding MGP_AJ_T0080835.1 MGP_AJ_G0031416.1 mouse_genomes_project 6 137371711 137381822 - MGP_AJ_P0080835 Lmo3 protein_coding protein_coding MGP_AJ_T0077833.1 MGP_AJ_G0030765.1 mouse_genomes_project 6 54203231 54204217 - MGP_AJ_P0077833 Vmn1r16 protein_coding protein_coding MGP_AJ_T0078703.1 MGP_AJ_G0030952.1 mouse_genomes_project 6 84962112 85011934 + MGP_AJ_P0078703 Gfpt1 protein_coding protein_coding MGP_AJ_T0078704.1 MGP_AJ_G0030952.1 mouse_genomes_project 6 84962112 84974584 + MGP_AJ_P0078704 Gfpt1 protein_coding protein_coding MGP_AJ_T0078705.1 MGP_AJ_G0030952.1 mouse_genomes_project 6 84962116 84973110 + Gfpt1 protein_coding processed_transcript MGP_AJ_T0078706.1 MGP_AJ_G0030952.1 mouse_genomes_project 6 84962116 84964925 + Gfpt1 protein_coding retained_intron MGP_AJ_T0078707.1 MGP_AJ_G0030952.1 mouse_genomes_project 6 84962116 84974584 + MGP_AJ_P0078707 Gfpt1 protein_coding protein_coding MGP_AJ_T0078708.1 MGP_AJ_G0030952.1 mouse_genomes_project 6 84962157 85007981 + MGP_AJ_P0078708 Gfpt1 protein_coding protein_coding MGP_AJ_T0078709.1 MGP_AJ_G0030952.1 mouse_genomes_project 6 84996546 85006095 + Gfpt1 protein_coding retained_intron MGP_AJ_T0015521.1 MGP_AJ_G0013616.1 mouse_genomes_project 6 103609965 103610273 + processed_pseudogene processed_pseudogene MGP_AJ_T0008613.1 MGP_AJ_G0006959.1 mouse_genomes_project 6 49098604 49103439 + Hottip lincRNA lincRNA MGP_AJ_T0008614.1 MGP_AJ_G0006959.1 mouse_genomes_project 6 49098613 49102915 + Hottip lincRNA lincRNA MGP_AJ_T0098463.1 MGP_AJ_G0036447.1 mouse_genomes_project 6 67902854 67903084 + pseudogene pseudogene MGP_AJ_T0015294.1 MGP_AJ_G0013389.1 mouse_genomes_project 6 31512312 31513008 - processed_pseudogene processed_pseudogene MGP_AJ_T0078291.1 MGP_AJ_G0030879.1 mouse_genomes_project 6 80822894 80826279 + Loxl3 protein_coding processed_transcript MGP_AJ_T0078292.1 MGP_AJ_G0030879.1 mouse_genomes_project 6 80822894 80842911 + MGP_AJ_P0078292 Loxl3 protein_coding protein_coding MGP_AJ_T0078293.1 MGP_AJ_G0030879.1 mouse_genomes_project 6 80822894 80842911 + MGP_AJ_P0078293 Loxl3 protein_coding protein_coding MGP_AJ_T0078294.1 MGP_AJ_G0030879.1 mouse_genomes_project 6 80827137 80833990 + Loxl3 protein_coding processed_transcript MGP_AJ_T0078295.1 MGP_AJ_G0030879.1 mouse_genomes_project 6 80840216 80841016 + Loxl3 protein_coding retained_intron MGP_AJ_T0015463.1 MGP_AJ_G0013558.1 mouse_genomes_project 6 82625795 82626803 + processed_pseudogene processed_pseudogene MGP_AJ_T0080061.1 MGP_AJ_G0031227.1 mouse_genomes_project 6 123099757 123127152 - MGP_AJ_P0080061 protein_coding protein_coding MGP_AJ_T0008746.1 MGP_AJ_G0007069.1 mouse_genomes_project 6 127425087 127425701 - Gm44066 lincRNA lincRNA MGP_AJ_T0078977.1 MGP_AJ_G0031012.1 mouse_genomes_project 6 89262535 89322754 + MGP_AJ_P0078977 Fbln2 protein_coding protein_coding MGP_AJ_T0078978.1 MGP_AJ_G0031012.1 mouse_genomes_project 6 89262535 89322755 + MGP_AJ_P0078978 Fbln2 protein_coding protein_coding MGP_AJ_T0078979.1 MGP_AJ_G0031012.1 mouse_genomes_project 6 89262902 89283341 + MGP_AJ_P0078979 Fbln2 protein_coding protein_coding MGP_AJ_T0078980.1 MGP_AJ_G0031012.1 mouse_genomes_project 6 89262904 89283520 + MGP_AJ_P0078980 Fbln2 protein_coding protein_coding MGP_AJ_T0078981.1 MGP_AJ_G0031012.1 mouse_genomes_project 6 89262907 89264307 + Fbln2 protein_coding processed_transcript MGP_AJ_T0078982.1 MGP_AJ_G0031012.1 mouse_genomes_project 6 89262911 89283540 + MGP_AJ_P0078982 Fbln2 protein_coding protein_coding MGP_AJ_T0078983.1 MGP_AJ_G0031012.1 mouse_genomes_project 6 89306215 89308041 + Fbln2 protein_coding retained_intron MGP_AJ_T0078984.1 MGP_AJ_G0031012.1 mouse_genomes_project 6 89306618 89313613 + Fbln2 protein_coding retained_intron MGP_AJ_T0078985.1 MGP_AJ_G0031012.1 mouse_genomes_project 6 89316093 89322646 + Fbln2 protein_coding retained_intron MGP_AJ_T0078768.1 MGP_AJ_G0030968.1 mouse_genomes_project 6 85817104 85843098 + MGP_AJ_P0078768 Copg1 protein_coding protein_coding MGP_AJ_T0078769.1 MGP_AJ_G0030968.1 mouse_genomes_project 6 85817218 85820164 + MGP_AJ_P0078769 Copg1 protein_coding protein_coding MGP_AJ_T0078770.1 MGP_AJ_G0030968.1 mouse_genomes_project 6 85817230 85823212 + Copg1 protein_coding processed_transcript MGP_AJ_T0078771.1 MGP_AJ_G0030968.1 mouse_genomes_project 6 85817247 85824367 + Copg1 protein_coding retained_intron MGP_AJ_T0078772.1 MGP_AJ_G0030968.1 mouse_genomes_project 6 85823347 85831759 + Copg1 protein_coding retained_intron MGP_AJ_T0078773.1 MGP_AJ_G0030968.1 mouse_genomes_project 6 85824520 85825507 + Copg1 protein_coding retained_intron MGP_AJ_T0078774.1 MGP_AJ_G0030968.1 mouse_genomes_project 6 85824860 85834387 + Copg1 protein_coding retained_intron MGP_AJ_T0078775.1 MGP_AJ_G0030968.1 mouse_genomes_project 6 85825401 85842033 + Copg1 protein_coding retained_intron MGP_AJ_T0078776.1 MGP_AJ_G0030968.1 mouse_genomes_project 6 85827207 85832171 + Copg1 protein_coding retained_intron MGP_AJ_T0078777.1 MGP_AJ_G0030968.1 mouse_genomes_project 6 85838274 85839557 + Copg1 protein_coding processed_transcript MGP_AJ_T0076587.1 MGP_AJ_G0030467.1 mouse_genomes_project 6 21160963 21165166 - Ndufa5 protein_coding retained_intron MGP_AJ_T0076588.1 MGP_AJ_G0030467.1 mouse_genomes_project 6 21160963 21169870 - MGP_AJ_P0076588 Ndufa5 protein_coding protein_coding MGP_AJ_T0076589.1 MGP_AJ_G0030467.1 mouse_genomes_project 6 21160963 21170313 - MGP_AJ_P0076589 Ndufa5 protein_coding protein_coding MGP_AJ_T0076590.1 MGP_AJ_G0030467.1 mouse_genomes_project 6 21160964 21169826 - Ndufa5 protein_coding processed_transcript MGP_AJ_T0015598.1 MGP_AJ_G0013693.1 mouse_genomes_project 6 125706894 125707204 - processed_pseudogene processed_pseudogene MGP_AJ_T0015293.1 MGP_AJ_G0013388.1 mouse_genomes_project 6 31502729 31502926 - processed_pseudogene processed_pseudogene MGP_AJ_T0002728.1 MGP_AJ_G0002600.1 mouse_genomes_project 6 37861269 37861529 + TR_V_pseudogene TR_V_pseudogene MGP_AJ_T0005082.1 MGP_AJ_G0004336.1 mouse_genomes_project 6 125224750 125247668 + Gm26673 antisense antisense MGP_AJ_T0015491.1 MGP_AJ_G0013586.1 mouse_genomes_project 6 92523515 92523931 + processed_pseudogene processed_pseudogene MGP_AJ_T0078741.1 MGP_AJ_G0030963.1 mouse_genomes_project 6 85702112 85703809 + MGP_AJ_P0078741 Gp9 protein_coding protein_coding MGP_AJ_T0008540.1 MGP_AJ_G0006911.1 mouse_genomes_project 6 27127487 27130402 + 1700012C14Rik lincRNA lincRNA MGP_AJ_T0008541.1 MGP_AJ_G0006911.1 mouse_genomes_project 6 27128344 27130454 + 1700012C14Rik lincRNA lincRNA MGP_AJ_T0005007.1 MGP_AJ_G0004286.1 mouse_genomes_project 6 84430647 84469018 + 1600020E01Rik antisense antisense MGP_AJ_T0005008.1 MGP_AJ_G0004286.1 mouse_genomes_project 6 84430647 84454810 + 1600020E01Rik antisense antisense MGP_AJ_T0005009.1 MGP_AJ_G0004286.1 mouse_genomes_project 6 84430673 84469018 + 1600020E01Rik antisense antisense MGP_AJ_T0005010.1 MGP_AJ_G0004286.1 mouse_genomes_project 6 84431212 84486679 + 1600020E01Rik antisense antisense MGP_AJ_T0005011.1 MGP_AJ_G0004286.1 mouse_genomes_project 6 84431721 84469018 + 1600020E01Rik antisense antisense MGP_AJ_T0005012.1 MGP_AJ_G0004286.1 mouse_genomes_project 6 84431803 84469017 + 1600020E01Rik antisense antisense MGP_AJ_T0005013.1 MGP_AJ_G0004286.1 mouse_genomes_project 6 84431876 84468077 + 1600020E01Rik antisense antisense MGP_AJ_T0005014.1 MGP_AJ_G0004286.1 mouse_genomes_project 6 84451772 84487109 + 1600020E01Rik antisense antisense MGP_AJ_T0001978.1 MGP_AJ_G0001891.1 mouse_genomes_project 6 43236367 43238842 + TEC TEC MGP_AJ_T0079183.1 MGP_AJ_G0031051.1 mouse_genomes_project 6 97713045 97754635 - MGP_AJ_P0079183 Eif4e3 protein_coding protein_coding MGP_AJ_T0015344.1 MGP_AJ_G0013439.1 mouse_genomes_project 6 46662206 46663726 - processed_pseudogene processed_pseudogene MGP_AJ_T0077598.1 MGP_AJ_G0030704.1 mouse_genomes_project 6 48283506 48294213 - MGP_AJ_P0077598 Hnrnpa2b1 protein_coding protein_coding MGP_AJ_T0077599.1 MGP_AJ_G0030704.1 mouse_genomes_project 6 48283695 48294166 - MGP_AJ_P0077599 Hnrnpa2b1 protein_coding nonsense_mediated_decay MGP_AJ_T0077600.1 MGP_AJ_G0030704.1 mouse_genomes_project 6 48283698 48294164 - MGP_AJ_P0077600 Hnrnpa2b1 protein_coding nonsense_mediated_decay MGP_AJ_T0077601.1 MGP_AJ_G0030704.1 mouse_genomes_project 6 48283698 48294164 - MGP_AJ_P0077601 Hnrnpa2b1 protein_coding protein_coding MGP_AJ_T0077602.1 MGP_AJ_G0030704.1 mouse_genomes_project 6 48283719 48285759 - Hnrnpa2b1 protein_coding retained_intron MGP_AJ_T0077603.1 MGP_AJ_G0030704.1 mouse_genomes_project 6 48285334 48294145 - MGP_AJ_P0077603 Hnrnpa2b1 protein_coding protein_coding MGP_AJ_T0077604.1 MGP_AJ_G0030704.1 mouse_genomes_project 6 48285334 48294091 - MGP_AJ_P0077604 Hnrnpa2b1 protein_coding protein_coding MGP_AJ_T0077605.1 MGP_AJ_G0030704.1 mouse_genomes_project 6 48285334 48294091 - MGP_AJ_P0077605 Hnrnpa2b1 protein_coding protein_coding MGP_AJ_T0077606.1 MGP_AJ_G0030704.1 mouse_genomes_project 6 48285374 48286735 - Hnrnpa2b1 protein_coding retained_intron MGP_AJ_T0077607.1 MGP_AJ_G0030704.1 mouse_genomes_project 6 48286046 48289276 - MGP_AJ_P0077607 Hnrnpa2b1 protein_coding protein_coding MGP_AJ_T0077608.1 MGP_AJ_G0030704.1 mouse_genomes_project 6 48287206 48288812 - Hnrnpa2b1 protein_coding retained_intron MGP_AJ_T0077609.1 MGP_AJ_G0030704.1 mouse_genomes_project 6 48287576 48289242 - Hnrnpa2b1 protein_coding retained_intron MGP_AJ_T0077610.1 MGP_AJ_G0030704.1 mouse_genomes_project 6 48288392 48294203 - Hnrnpa2b1 protein_coding retained_intron MGP_AJ_T0010759.1 MGP_AJ_G0008881.1 mouse_genomes_project 6 33377250 33377397 + Gm25111 miRNA miRNA MGP_AJ_T0005105.1 MGP_AJ_G0004356.1 mouse_genomes_project 6 135007157 135009706 + Gm26653 antisense antisense MGP_AJ_T0102720.1 MGP_AJ_G0040461.1 mouse_genomes_project 6 128850014 128861164 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0077972.1 MGP_AJ_G0030808.1 mouse_genomes_project 6 63772350 63773280 - MGP_AJ_P0077972 protein_coding protein_coding MGP_AJ_T0008714.1 MGP_AJ_G0007039.1 mouse_genomes_project 6 111010262 111012556 + Gm44081 lincRNA lincRNA MGP_AJ_T0078929.1 MGP_AJ_G0031005.1 mouse_genomes_project 6 88441314 88467232 - MGP_AJ_P0078929 Cfap100 protein_coding nonsense_mediated_decay MGP_AJ_T0078930.1 MGP_AJ_G0031005.1 mouse_genomes_project 6 88441571 88466877 - MGP_AJ_P0078930 Cfap100 protein_coding protein_coding MGP_AJ_T0078931.1 MGP_AJ_G0031005.1 mouse_genomes_project 6 88441572 88465934 - MGP_AJ_P0078931 Cfap100 protein_coding unknown_likely_coding MGP_AJ_T0078932.1 MGP_AJ_G0031005.1 mouse_genomes_project 6 88441573 88466858 - MGP_AJ_P0078932 Cfap100 protein_coding protein_coding MGP_AJ_T0078933.1 MGP_AJ_G0031005.1 mouse_genomes_project 6 88458718 88467242 - MGP_AJ_P0078933 Cfap100 protein_coding protein_coding MGP_AJ_T0078934.1 MGP_AJ_G0031005.1 mouse_genomes_project 6 88458931 88466880 - MGP_AJ_P0078934 Cfap100 protein_coding protein_coding MGP_AJ_T0078935.1 MGP_AJ_G0031005.1 mouse_genomes_project 6 88464928 88466840 - MGP_AJ_P0078935 Cfap100 protein_coding protein_coding MGP_AJ_T0078936.1 MGP_AJ_G0031005.1 mouse_genomes_project 6 88466340 88467030 - Cfap100 protein_coding processed_transcript MGP_AJ_T0008515.1 MGP_AJ_G0006894.1 mouse_genomes_project 6 7580610 7645280 + Gm44004 lincRNA lincRNA MGP_AJ_T0102715.1 MGP_AJ_G0040457.1 mouse_genomes_project 6 127207779 127225687 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0102716.1 MGP_AJ_G0040457.1 mouse_genomes_project 6 127207802 127220896 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0015616.1 MGP_AJ_G0013711.1 mouse_genomes_project 6 128850776 128850888 + processed_pseudogene processed_pseudogene MGP_AJ_T0008645.1 MGP_AJ_G0006987.1 mouse_genomes_project 6 71120014 71141971 - 1700065L07Rik lincRNA lincRNA MGP_AJ_T0078723.1 MGP_AJ_G0030957.1 mouse_genomes_project 6 85303422 85309193 - MGP_AJ_P0078723 Gkn3 protein_coding protein_coding MGP_AJ_T0005109.1 MGP_AJ_G0004358.1 mouse_genomes_project 6 137398961 137416122 + Gm30332 antisense antisense MGP_AJ_T0018249.1 MGP_AJ_G0015604.1 mouse_genomes_project 6 45529799 45532990 - Gimap1os processed_transcript antisense MGP_AJ_T0018250.1 MGP_AJ_G0015604.1 mouse_genomes_project 6 45531893 45533813 - Gimap1os processed_transcript retained_intron MGP_AJ_T0079546.1 MGP_AJ_G0031120.1 mouse_genomes_project 6 113691497 113712213 + MGP_AJ_P0079546 Mkrn2 protein_coding protein_coding MGP_AJ_T0079547.1 MGP_AJ_G0031120.1 mouse_genomes_project 6 113691556 113703003 + Mkrn2 protein_coding processed_transcript MGP_AJ_T0079548.1 MGP_AJ_G0031120.1 mouse_genomes_project 6 113700888 113701966 + Mkrn2 protein_coding retained_intron MGP_AJ_T0008720.1 MGP_AJ_G0007045.1 mouse_genomes_project 6 115592965 115599209 + Gm43983 lincRNA lincRNA MGP_AJ_T0015597.1 MGP_AJ_G0013692.1 mouse_genomes_project 6 125689806 125690326 + processed_pseudogene processed_pseudogene MGP_AJ_T0000301.1 MGP_AJ_G0000245.1 mouse_genomes_project 6 66753279 66753752 - IG_V_pseudogene IG_V_pseudogene MGP_AJ_T0080434.1 MGP_AJ_G0031296.1 mouse_genomes_project 6 126942090 126951003 + MGP_AJ_P0080434 protein_coding protein_coding MGP_AJ_T0080435.1 MGP_AJ_G0031296.1 mouse_genomes_project 6 126942102 126950896 + MGP_AJ_P0080435 protein_coding nonsense_mediated_decay MGP_AJ_T0080436.1 MGP_AJ_G0031296.1 mouse_genomes_project 6 126942564 126951721 + MGP_AJ_P0080436 protein_coding protein_coding MGP_AJ_T0080437.1 MGP_AJ_G0031296.1 mouse_genomes_project 6 126942764 126951721 + MGP_AJ_P0080437 protein_coding protein_coding MGP_AJ_T0080438.1 MGP_AJ_G0031296.1 mouse_genomes_project 6 126942842 126951721 + protein_coding retained_intron MGP_AJ_T0080439.1 MGP_AJ_G0031296.1 mouse_genomes_project 6 126943087 126959202 + MGP_AJ_P0080439 protein_coding non_stop_decay MGP_AJ_T0005075.1 MGP_AJ_G0004330.1 mouse_genomes_project 6 122932627 123105828 + antisense antisense MGP_AJ_T0080471.1 MGP_AJ_G0031304.1 mouse_genomes_project 6 127226251 127241892 + MGP_AJ_P0080471 Clec2h protein_coding protein_coding MGP_AJ_T0080472.1 MGP_AJ_G0031304.1 mouse_genomes_project 6 127226252 127239498 + MGP_AJ_P0080472 Clec2h protein_coding nonsense_mediated_decay MGP_AJ_T0080473.1 MGP_AJ_G0031304.1 mouse_genomes_project 6 127226253 127239289 + MGP_AJ_P0080473 Clec2h protein_coding protein_coding MGP_AJ_T0080474.1 MGP_AJ_G0031304.1 mouse_genomes_project 6 127226257 127239491 + Clec2h protein_coding retained_intron MGP_AJ_T0101363.1 MGP_AJ_G0039329.1 mouse_genomes_project 6 91425713 91425844 - Gm25094 snoRNA snoRNA MGP_AJ_T0015276.1 MGP_AJ_G0013371.1 mouse_genomes_project 6 19415536 19416304 + processed_pseudogene processed_pseudogene MGP_AJ_T0081119.1 MGP_AJ_G0031469.1 mouse_genomes_project 6 145954541 145958634 - MGP_AJ_P0081119 1700034J05Rik protein_coding protein_coding MGP_AJ_T0081120.1 MGP_AJ_G0031469.1 mouse_genomes_project 6 145955512 145958626 - MGP_AJ_P0081120 1700034J05Rik protein_coding protein_coding MGP_AJ_T0005003.1 MGP_AJ_G0004283.1 mouse_genomes_project 6 83979021 83981743 - Gm44089 antisense antisense MGP_AJ_T0002044.1 MGP_AJ_G0001957.1 mouse_genomes_project 6 83933042 83934842 + TEC TEC MGP_AJ_T0102047.1 MGP_AJ_G0039838.1 mouse_genomes_project 6 127571939 127586993 + transcribed_unprocessed_pseudogene processed_transcript MGP_AJ_T0102048.1 MGP_AJ_G0039838.1 mouse_genomes_project 6 127572027 127586914 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_AJ_T0000292.1 MGP_AJ_G0000236.1 mouse_genomes_project 6 66017220 66018456 - IG_V_pseudogene IG_V_pseudogene MGP_AJ_T0015258.1 MGP_AJ_G0013353.1 mouse_genomes_project 6 12880240 12880487 - processed_pseudogene processed_pseudogene MGP_AJ_T0010794.1 MGP_AJ_G0008916.1 mouse_genomes_project 6 111499322 111499412 + Gm24387 miRNA miRNA MGP_AJ_T0078864.1 MGP_AJ_G0030983.1 mouse_genomes_project 6 86850133 86860102 + MGP_AJ_P0078864 Tpra1 protein_coding protein_coding MGP_AJ_T0078865.1 MGP_AJ_G0030983.1 mouse_genomes_project 6 86850181 86857285 + Tpra1 protein_coding processed_transcript MGP_AJ_T0078866.1 MGP_AJ_G0030983.1 mouse_genomes_project 6 86850199 86853980 + Tpra1 protein_coding retained_intron MGP_AJ_T0078867.1 MGP_AJ_G0030983.1 mouse_genomes_project 6 86850199 86854447 + Tpra1 protein_coding processed_transcript MGP_AJ_T0078868.1 MGP_AJ_G0030983.1 mouse_genomes_project 6 86850215 86860102 + MGP_AJ_P0078868 Tpra1 protein_coding protein_coding MGP_AJ_T0078869.1 MGP_AJ_G0030983.1 mouse_genomes_project 6 86850219 86858234 + Tpra1 protein_coding processed_transcript MGP_AJ_T0078870.1 MGP_AJ_G0030983.1 mouse_genomes_project 6 86850224 86858098 + MGP_AJ_P0078870 Tpra1 protein_coding protein_coding MGP_AJ_T0078871.1 MGP_AJ_G0030983.1 mouse_genomes_project 6 86850234 86858082 + MGP_AJ_P0078871 Tpra1 protein_coding nonsense_mediated_decay MGP_AJ_T0078872.1 MGP_AJ_G0030983.1 mouse_genomes_project 6 86850335 86860102 + MGP_AJ_P0078872 Tpra1 protein_coding protein_coding MGP_AJ_T0078873.1 MGP_AJ_G0030983.1 mouse_genomes_project 6 86853516 86857172 + Tpra1 protein_coding processed_transcript MGP_AJ_T0078874.1 MGP_AJ_G0030983.1 mouse_genomes_project 6 86853828 86860102 + MGP_AJ_P0078874 Tpra1 protein_coding protein_coding MGP_AJ_T0078875.1 MGP_AJ_G0030983.1 mouse_genomes_project 6 86853837 86855640 + Tpra1 protein_coding processed_transcript MGP_AJ_T0078876.1 MGP_AJ_G0030983.1 mouse_genomes_project 6 86853839 86859618 + MGP_AJ_P0078876 Tpra1 protein_coding nonsense_mediated_decay MGP_AJ_T0078877.1 MGP_AJ_G0030983.1 mouse_genomes_project 6 86853857 86858691 + MGP_AJ_P0078877 Tpra1 protein_coding nonsense_mediated_decay MGP_AJ_T0078878.1 MGP_AJ_G0030983.1 mouse_genomes_project 6 86853923 86858519 + MGP_AJ_P0078878 Tpra1 protein_coding nonsense_mediated_decay MGP_AJ_T0078879.1 MGP_AJ_G0030983.1 mouse_genomes_project 6 86855854 86860109 + MGP_AJ_P0078879 Tpra1 protein_coding nonsense_mediated_decay MGP_AJ_T0078880.1 MGP_AJ_G0030983.1 mouse_genomes_project 6 86855854 86859855 + MGP_AJ_P0078880 Tpra1 protein_coding protein_coding MGP_AJ_T0078881.1 MGP_AJ_G0030983.1 mouse_genomes_project 6 86855868 86858972 + MGP_AJ_P0078881 Tpra1 protein_coding nonsense_mediated_decay MGP_AJ_T0078882.1 MGP_AJ_G0030983.1 mouse_genomes_project 6 86856067 86857398 + Tpra1 protein_coding processed_transcript MGP_AJ_T0078883.1 MGP_AJ_G0030983.1 mouse_genomes_project 6 86856067 86857414 + Tpra1 protein_coding retained_intron MGP_AJ_T0078884.1 MGP_AJ_G0030983.1 mouse_genomes_project 6 86858028 86858820 + Tpra1 protein_coding retained_intron MGP_AJ_T0078885.1 MGP_AJ_G0030983.1 mouse_genomes_project 6 86858093 86858369 + Tpra1 protein_coding retained_intron MGP_AJ_T0078886.1 MGP_AJ_G0030983.1 mouse_genomes_project 6 86858469 86859626 + Tpra1 protein_coding retained_intron MGP_AJ_T0005125.1 MGP_AJ_G0004373.1 mouse_genomes_project 6 145997688 145999335 - Gm44085 antisense antisense MGP_AJ_T0076203.1 MGP_AJ_G0030393.1 mouse_genomes_project 6 181059 220344 - MGP_AJ_P0076203 Hepacam2 protein_coding protein_coding MGP_AJ_T0076204.1 MGP_AJ_G0030393.1 mouse_genomes_project 6 181358 213134 - Hepacam2 protein_coding retained_intron MGP_AJ_T0076205.1 MGP_AJ_G0030393.1 mouse_genomes_project 6 201806 213148 - MGP_AJ_P0076205 Hepacam2 protein_coding protein_coding MGP_AJ_T0076206.1 MGP_AJ_G0030393.1 mouse_genomes_project 6 209048 224044 - MGP_AJ_P0076206 Hepacam2 protein_coding protein_coding MGP_AJ_T0076207.1 MGP_AJ_G0030393.1 mouse_genomes_project 6 209335 213115 - Hepacam2 protein_coding retained_intron MGP_AJ_T0098717.1 MGP_AJ_G0036701.1 mouse_genomes_project 6 139265543 139265647 + n-R5s168 rRNA rRNA MGP_AJ_T0008550.1 MGP_AJ_G0006917.1 mouse_genomes_project 6 28038909 28054530 + Gm14532 lincRNA lincRNA MGP_AJ_T0002146.1 MGP_AJ_G0002058.1 mouse_genomes_project 6 126699889 126701307 - TEC TEC MGP_AJ_T0000295.1 MGP_AJ_G0000239.1 mouse_genomes_project 6 66218961 66219364 - IG_V_pseudogene IG_V_pseudogene MGP_AJ_T0004992.1 MGP_AJ_G0004277.1 mouse_genomes_project 6 81498227 81517641 - Vax2os antisense antisense MGP_AJ_T0004993.1 MGP_AJ_G0004277.1 mouse_genomes_project 6 81505522 81516376 - Vax2os antisense antisense MGP_AJ_T0004994.1 MGP_AJ_G0004277.1 mouse_genomes_project 6 81507683 81509097 - Vax2os antisense antisense MGP_AJ_T0004995.1 MGP_AJ_G0004277.1 mouse_genomes_project 6 81508033 81509176 - Vax2os antisense antisense MGP_AJ_T0005098.1 MGP_AJ_G0004349.1 mouse_genomes_project 6 133068482 133079156 - Gm17089 antisense antisense MGP_AJ_T0000182.1 MGP_AJ_G0000138.1 mouse_genomes_project 6 67283542 67284131 - MGP_AJ_P0000182 IG_V_gene IG_V_gene MGP_AJ_T0102678.1 MGP_AJ_G0040420.1 mouse_genomes_project 6 39846810 39847126 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0008796.1 MGP_AJ_G0007101.1 mouse_genomes_project 6 147596508 147604032 - Gm6313 lincRNA lincRNA MGP_AJ_T0008797.1 MGP_AJ_G0007101.1 mouse_genomes_project 6 147596508 147599456 - Gm6313 lincRNA lincRNA MGP_AJ_T0015365.1 MGP_AJ_G0013460.1 mouse_genomes_project 6 56135163 56137597 + processed_pseudogene processed_pseudogene MGP_AJ_T0077365.1 MGP_AJ_G0030652.1 mouse_genomes_project 6 41810577 44041857 + MGP_AJ_P0077365 Cntnap2 protein_coding protein_coding MGP_AJ_T0077366.1 MGP_AJ_G0030652.1 mouse_genomes_project 6 42922162 43179343 + Cntnap2 protein_coding processed_transcript MGP_AJ_T0077367.1 MGP_AJ_G0030652.1 mouse_genomes_project 6 43770754 43822998 + MGP_AJ_P0077367 Cntnap2 protein_coding protein_coding MGP_AJ_T0077368.1 MGP_AJ_G0030652.1 mouse_genomes_project 6 43981009 44041853 + MGP_AJ_P0077368 Cntnap2 protein_coding protein_coding MGP_AJ_T0077369.1 MGP_AJ_G0030652.1 mouse_genomes_project 6 43981075 44036752 + MGP_AJ_P0077369 Cntnap2 protein_coding protein_coding MGP_AJ_T0101388.1 MGP_AJ_G0039354.1 mouse_genomes_project 6 123746186 123746315 - Gm24175 snoRNA snoRNA MGP_AJ_T0002667.1 MGP_AJ_G0002549.1 mouse_genomes_project 6 37802187 37802726 + MGP_AJ_P0002667 Trbv3 TR_V_gene TR_V_gene MGP_AJ_T0100094.1 MGP_AJ_G0038060.1 mouse_genomes_project 6 64107574 64107708 + Gm25260 snRNA snRNA MGP_AJ_T0078960.1 MGP_AJ_G0031010.1 mouse_genomes_project 6 89060138 89165180 - MGP_AJ_P0078960 Nup210 protein_coding protein_coding MGP_AJ_T0078961.1 MGP_AJ_G0031010.1 mouse_genomes_project 6 89060140 89165170 - MGP_AJ_P0078961 Nup210 protein_coding protein_coding MGP_AJ_T0078962.1 MGP_AJ_G0031010.1 mouse_genomes_project 6 89060140 89103275 - MGP_AJ_P0078962 Nup210 protein_coding protein_coding MGP_AJ_T0078963.1 MGP_AJ_G0031010.1 mouse_genomes_project 6 89060387 89064498 - Nup210 protein_coding processed_transcript MGP_AJ_T0078964.1 MGP_AJ_G0031010.1 mouse_genomes_project 6 89065813 89072602 - Nup210 protein_coding retained_intron MGP_AJ_T0078965.1 MGP_AJ_G0031010.1 mouse_genomes_project 6 89065992 89071145 - Nup210 protein_coding processed_transcript MGP_AJ_T0078966.1 MGP_AJ_G0031010.1 mouse_genomes_project 6 89073672 89077351 - Nup210 protein_coding retained_intron MGP_AJ_T0078967.1 MGP_AJ_G0031010.1 mouse_genomes_project 6 89100473 89101512 - Nup210 protein_coding processed_transcript MGP_AJ_T0078968.1 MGP_AJ_G0031010.1 mouse_genomes_project 6 89108596 89114518 - Nup210 protein_coding processed_transcript MGP_AJ_T0078969.1 MGP_AJ_G0031010.1 mouse_genomes_project 6 89134173 89146985 - Nup210 protein_coding retained_intron MGP_AJ_T0078970.1 MGP_AJ_G0031010.1 mouse_genomes_project 6 89162707 89165147 - Nup210 protein_coding retained_intron MGP_AJ_T0099076.1 MGP_AJ_G0037049.1 mouse_genomes_project 6 88833527 88833842 - sense_intronic sense_intronic MGP_AJ_T0015607.1 MGP_AJ_G0013702.1 mouse_genomes_project 6 127075511 127075917 - processed_pseudogene processed_pseudogene MGP_AJ_T0008544.1 MGP_AJ_G0006914.1 mouse_genomes_project 6 27768949 27769253 - Gm13834 lincRNA lincRNA MGP_AJ_T0001969.1 MGP_AJ_G0001882.1 mouse_genomes_project 6 42276672 42280187 + TEC TEC MGP_AJ_T0079727.1 MGP_AJ_G0031158.1 mouse_genomes_project 6 116701604 117319357 - MGP_AJ_P0079727 Cacna1c protein_coding protein_coding MGP_AJ_T0079728.1 MGP_AJ_G0031158.1 mouse_genomes_project 6 116706668 116709796 - Cacna1c protein_coding processed_transcript MGP_AJ_T0079729.1 MGP_AJ_G0031158.1 mouse_genomes_project 6 116706683 116872891 - Cacna1c protein_coding processed_transcript MGP_AJ_T0079730.1 MGP_AJ_G0031158.1 mouse_genomes_project 6 116706828 117230067 - MGP_AJ_P0079730 Cacna1c protein_coding protein_coding MGP_AJ_T0079731.1 MGP_AJ_G0031158.1 mouse_genomes_project 6 116707306 117230067 - MGP_AJ_P0079731 Cacna1c protein_coding protein_coding MGP_AJ_T0079732.1 MGP_AJ_G0031158.1 mouse_genomes_project 6 116707306 117230114 - MGP_AJ_P0079732 Cacna1c protein_coding protein_coding MGP_AJ_T0079733.1 MGP_AJ_G0031158.1 mouse_genomes_project 6 116707446 117319544 - MGP_AJ_P0079733 Cacna1c protein_coding protein_coding MGP_AJ_T0079734.1 MGP_AJ_G0031158.1 mouse_genomes_project 6 116708011 117319513 - MGP_AJ_P0079734 Cacna1c protein_coding protein_coding MGP_AJ_T0079735.1 MGP_AJ_G0031158.1 mouse_genomes_project 6 116708011 117230436 - MGP_AJ_P0079735 Cacna1c protein_coding protein_coding MGP_AJ_T0079736.1 MGP_AJ_G0031158.1 mouse_genomes_project 6 116708157 117229853 - MGP_AJ_P0079736 Cacna1c protein_coding protein_coding MGP_AJ_T0079737.1 MGP_AJ_G0031158.1 mouse_genomes_project 6 116708157 117229853 - MGP_AJ_P0079737 Cacna1c protein_coding protein_coding MGP_AJ_T0079738.1 MGP_AJ_G0031158.1 mouse_genomes_project 6 116708157 117229853 - MGP_AJ_P0079738 Cacna1c protein_coding protein_coding MGP_AJ_T0079739.1 MGP_AJ_G0031158.1 mouse_genomes_project 6 116708157 117229853 - MGP_AJ_P0079739 Cacna1c protein_coding protein_coding MGP_AJ_T0079740.1 MGP_AJ_G0031158.1 mouse_genomes_project 6 116708157 117229853 - MGP_AJ_P0079740 Cacna1c protein_coding protein_coding MGP_AJ_T0079741.1 MGP_AJ_G0031158.1 mouse_genomes_project 6 116708157 117229853 - MGP_AJ_P0079741 Cacna1c protein_coding protein_coding MGP_AJ_T0079742.1 MGP_AJ_G0031158.1 mouse_genomes_project 6 116708163 117199599 - MGP_AJ_P0079742 Cacna1c protein_coding protein_coding MGP_AJ_T0079743.1 MGP_AJ_G0031158.1 mouse_genomes_project 6 116708256 117229853 - MGP_AJ_P0079743 Cacna1c protein_coding protein_coding MGP_AJ_T0079744.1 MGP_AJ_G0031158.1 mouse_genomes_project 6 116708256 117319357 - MGP_AJ_P0079744 Cacna1c protein_coding protein_coding MGP_AJ_T0079745.1 MGP_AJ_G0031158.1 mouse_genomes_project 6 116708256 117229853 - MGP_AJ_P0079745 Cacna1c protein_coding protein_coding MGP_AJ_T0079746.1 MGP_AJ_G0031158.1 mouse_genomes_project 6 116728394 116742315 - Cacna1c protein_coding processed_transcript MGP_AJ_T0079747.1 MGP_AJ_G0031158.1 mouse_genomes_project 6 116817135 116822060 - Cacna1c protein_coding retained_intron MGP_AJ_T0079748.1 MGP_AJ_G0031158.1 mouse_genomes_project 6 117062909 117319535 - Cacna1c protein_coding processed_transcript MGP_AJ_T0102026.1 MGP_AJ_G0039831.1 mouse_genomes_project 6 44692797 44704007 + transcribed_unprocessed_pseudogene processed_transcript MGP_AJ_T0102027.1 MGP_AJ_G0039831.1 mouse_genomes_project 6 44692821 44697607 + transcribed_unprocessed_pseudogene retained_intron MGP_AJ_T0102028.1 MGP_AJ_G0039831.1 mouse_genomes_project 6 44692829 44697623 + transcribed_unprocessed_pseudogene retained_intron MGP_AJ_T0102029.1 MGP_AJ_G0039831.1 mouse_genomes_project 6 44692834 44696189 + transcribed_unprocessed_pseudogene processed_transcript MGP_AJ_T0102030.1 MGP_AJ_G0039831.1 mouse_genomes_project 6 44692834 44702611 + transcribed_unprocessed_pseudogene processed_transcript MGP_AJ_T0102031.1 MGP_AJ_G0039831.1 mouse_genomes_project 6 44692876 44703032 + transcribed_unprocessed_pseudogene processed_transcript MGP_AJ_T0102032.1 MGP_AJ_G0039831.1 mouse_genomes_project 6 44694895 44698447 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_AJ_T0102033.1 MGP_AJ_G0039831.1 mouse_genomes_project 6 44694963 44700796 + transcribed_unprocessed_pseudogene processed_transcript MGP_AJ_T0102034.1 MGP_AJ_G0039831.1 mouse_genomes_project 6 44695354 44705376 + transcribed_unprocessed_pseudogene processed_transcript MGP_AJ_T0102035.1 MGP_AJ_G0039831.1 mouse_genomes_project 6 44695367 44703033 + transcribed_unprocessed_pseudogene processed_transcript MGP_AJ_T0102036.1 MGP_AJ_G0039831.1 mouse_genomes_project 6 44696135 44703032 + transcribed_unprocessed_pseudogene processed_transcript MGP_AJ_T0102040.1 MGP_AJ_G0039834.1 mouse_genomes_project 6 82984868 83000754 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_AJ_T0102041.1 MGP_AJ_G0039834.1 mouse_genomes_project 6 82985071 83001009 + transcribed_unprocessed_pseudogene processed_transcript MGP_AJ_T0100102.1 MGP_AJ_G0038068.1 mouse_genomes_project 6 94567957 94568054 - Gm22971 snRNA snRNA MGP_AJ_T0077510.1 MGP_AJ_G0030684.1 mouse_genomes_project 6 45623954 45630408 - MGP_AJ_P0077510 Tmem176b protein_coding protein_coding MGP_AJ_T0077511.1 MGP_AJ_G0030684.1 mouse_genomes_project 6 45624523 45630671 - MGP_AJ_P0077511 Tmem176b protein_coding protein_coding MGP_AJ_T0077512.1 MGP_AJ_G0030684.1 mouse_genomes_project 6 45625348 45630988 - MGP_AJ_P0077512 Tmem176b protein_coding protein_coding MGP_AJ_T0077513.1 MGP_AJ_G0030684.1 mouse_genomes_project 6 45625348 45631406 - MGP_AJ_P0077513 Tmem176b protein_coding protein_coding MGP_AJ_T0077514.1 MGP_AJ_G0030684.1 mouse_genomes_project 6 45625350 45630658 - MGP_AJ_P0077514 Tmem176b protein_coding protein_coding MGP_AJ_T0077515.1 MGP_AJ_G0030684.1 mouse_genomes_project 6 45625417 45630505 - MGP_AJ_P0077515 Tmem176b protein_coding protein_coding MGP_AJ_T0077516.1 MGP_AJ_G0030684.1 mouse_genomes_project 6 45625702 45630365 - Tmem176b protein_coding retained_intron MGP_AJ_T0078374.1 MGP_AJ_G0030895.1 mouse_genomes_project 6 80958454 80993952 + MGP_AJ_P0078374 Dctn1 protein_coding protein_coding MGP_AJ_T0078375.1 MGP_AJ_G0030895.1 mouse_genomes_project 6 80958485 80993953 + MGP_AJ_P0078375 Dctn1 protein_coding protein_coding MGP_AJ_T0078376.1 MGP_AJ_G0030895.1 mouse_genomes_project 6 80958538 80983396 + MGP_AJ_P0078376 Dctn1 protein_coding protein_coding MGP_AJ_T0078377.1 MGP_AJ_G0030895.1 mouse_genomes_project 6 80973393 80993806 + MGP_AJ_P0078377 Dctn1 protein_coding protein_coding MGP_AJ_T0078378.1 MGP_AJ_G0030895.1 mouse_genomes_project 6 80973396 80993952 + MGP_AJ_P0078378 Dctn1 protein_coding protein_coding MGP_AJ_T0078379.1 MGP_AJ_G0030895.1 mouse_genomes_project 6 80973420 80982967 + MGP_AJ_P0078379 Dctn1 protein_coding protein_coding MGP_AJ_T0078380.1 MGP_AJ_G0030895.1 mouse_genomes_project 6 80979758 80993953 + MGP_AJ_P0078380 Dctn1 protein_coding protein_coding MGP_AJ_T0078381.1 MGP_AJ_G0030895.1 mouse_genomes_project 6 80982424 80983421 + Dctn1 protein_coding retained_intron MGP_AJ_T0078382.1 MGP_AJ_G0030895.1 mouse_genomes_project 6 80988171 80989416 + Dctn1 protein_coding retained_intron MGP_AJ_T0078383.1 MGP_AJ_G0030895.1 mouse_genomes_project 6 80988370 80989115 + Dctn1 protein_coding retained_intron MGP_AJ_T0078384.1 MGP_AJ_G0030895.1 mouse_genomes_project 6 80988929 80989904 + Dctn1 protein_coding retained_intron MGP_AJ_T0078385.1 MGP_AJ_G0030895.1 mouse_genomes_project 6 80990849 80992452 + Dctn1 protein_coding retained_intron MGP_AJ_T0081056.1 MGP_AJ_G0031458.1 mouse_genomes_project 6 144912353 144919697 - MGP_AJ_P0081056 Bhlhe41 protein_coding protein_coding MGP_AJ_T0081057.1 MGP_AJ_G0031458.1 mouse_genomes_project 6 144917643 144919441 - MGP_AJ_P0081057 Bhlhe41 protein_coding protein_coding MGP_AJ_T0081058.1 MGP_AJ_G0031458.1 mouse_genomes_project 6 144918801 144919491 - Bhlhe41 protein_coding retained_intron MGP_AJ_T0078041.1 MGP_AJ_G0030828.1 mouse_genomes_project 6 69101987 69107803 - Rmnd5a protein_coding processed_transcript MGP_AJ_T0078042.1 MGP_AJ_G0030828.1 mouse_genomes_project 6 69102854 69107708 - Rmnd5a protein_coding processed_transcript MGP_AJ_T0078043.1 MGP_AJ_G0030828.1 mouse_genomes_project 6 69104645 69152641 - MGP_AJ_P0078043 Rmnd5a protein_coding protein_coding MGP_AJ_T0078044.1 MGP_AJ_G0030828.1 mouse_genomes_project 6 69105980 69108719 - Rmnd5a protein_coding retained_intron MGP_AJ_T0011652.1 MGP_AJ_G0009774.1 mouse_genomes_project 6 49098887 49099248 + Gm27383 misc_RNA misc_RNA MGP_AJ_T0000210.1 MGP_AJ_G0000157.1 mouse_genomes_project 6 68000684 68001251 - MGP_AJ_P0000210 IG_V_gene IG_V_gene MGP_AJ_T0100075.1 MGP_AJ_G0038041.1 mouse_genomes_project 6 16279413 16279520 + Gm22828 snRNA snRNA MGP_AJ_T0015610.1 MGP_AJ_G0013705.1 mouse_genomes_project 6 127221973 127222130 + processed_pseudogene processed_pseudogene MGP_AJ_T0002689.1 MGP_AJ_G0002567.1 mouse_genomes_project 6 38034890 38035505 + MGP_AJ_P0002689 Trbv30 TR_V_gene TR_V_gene MGP_AJ_T0002690.1 MGP_AJ_G0002567.1 mouse_genomes_project 6 38034890 38035505 + MGP_AJ_P0002690 Trbv30 TR_V_gene TR_V_gene MGP_AJ_T0081012.1 MGP_AJ_G0031451.1 mouse_genomes_project 6 144152426 144213360 + MGP_AJ_P0081012 Lrmp protein_coding nonsense_mediated_decay MGP_AJ_T0081013.1 MGP_AJ_G0031451.1 mouse_genomes_project 6 144158492 144213366 + MGP_AJ_P0081013 Lrmp protein_coding protein_coding MGP_AJ_T0081014.1 MGP_AJ_G0031451.1 mouse_genomes_project 6 144158495 144206439 + Lrmp protein_coding retained_intron MGP_AJ_T0081015.1 MGP_AJ_G0031451.1 mouse_genomes_project 6 144158534 144198780 + Lrmp protein_coding retained_intron MGP_AJ_T0081016.1 MGP_AJ_G0031451.1 mouse_genomes_project 6 144174248 144198205 + MGP_AJ_P0081016 Lrmp protein_coding protein_coding MGP_AJ_T0081017.1 MGP_AJ_G0031451.1 mouse_genomes_project 6 144182160 144196439 + Lrmp protein_coding retained_intron MGP_AJ_T0081018.1 MGP_AJ_G0031451.1 mouse_genomes_project 6 144182160 144198793 + MGP_AJ_P0081018 Lrmp protein_coding protein_coding MGP_AJ_T0081019.1 MGP_AJ_G0031451.1 mouse_genomes_project 6 144182163 144213360 + MGP_AJ_P0081019 Lrmp protein_coding protein_coding MGP_AJ_T0081020.1 MGP_AJ_G0031451.1 mouse_genomes_project 6 144195529 144210139 + Lrmp protein_coding processed_transcript MGP_AJ_T0081021.1 MGP_AJ_G0031451.1 mouse_genomes_project 6 144207939 144213109 + Lrmp protein_coding retained_intron MGP_AJ_T0101368.1 MGP_AJ_G0039334.1 mouse_genomes_project 6 95874986 95875129 + Gm23703 snoRNA snoRNA MGP_AJ_T0000317.1 MGP_AJ_G0000261.1 mouse_genomes_project 6 68147938 68148238 - IG_V_pseudogene IG_V_pseudogene MGP_AJ_T0076222.1 MGP_AJ_G0030396.1 mouse_genomes_project 6 677736 683954 - MGP_AJ_P0076222 Tfpi2 protein_coding protein_coding MGP_AJ_T0076223.1 MGP_AJ_G0030396.1 mouse_genomes_project 6 678526 705077 - MGP_AJ_P0076223 Tfpi2 protein_coding protein_coding MGP_AJ_T0076224.1 MGP_AJ_G0030396.1 mouse_genomes_project 6 680685 705138 - MGP_AJ_P0076224 Tfpi2 protein_coding protein_coding MGP_AJ_T0002666.1 MGP_AJ_G0002548.1 mouse_genomes_project 6 37801237 37801893 + MGP_AJ_P0002666 Trbv2 TR_V_gene TR_V_gene MGP_AJ_T0000279.1 MGP_AJ_G0000223.1 mouse_genomes_project 6 65398159 65398923 + IG_V_pseudogene IG_V_pseudogene MGP_AJ_T0102723.1 MGP_AJ_G0040464.1 mouse_genomes_project 6 129711396 129724681 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0101346.1 MGP_AJ_G0039312.1 mouse_genomes_project 6 54768865 54768994 - Gm25726 snoRNA snoRNA MGP_AJ_T0001977.1 MGP_AJ_G0001890.1 mouse_genomes_project 6 43157559 43160087 + TEC TEC MGP_AJ_T0102705.1 MGP_AJ_G0040447.1 mouse_genomes_project 6 87910050 87910988 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0002159.1 MGP_AJ_G0002071.1 mouse_genomes_project 6 134134865 134135121 - TEC TEC MGP_AJ_T0015308.1 MGP_AJ_G0013403.1 mouse_genomes_project 6 37780027 37780408 + processed_pseudogene processed_pseudogene MGP_AJ_T0002019.1 MGP_AJ_G0001932.1 mouse_genomes_project 6 75103187 75105405 - TEC TEC MGP_AJ_T0001931.1 MGP_AJ_G0001844.1 mouse_genomes_project 6 19942508 19944848 + TEC TEC MGP_AJ_T0101374.1 MGP_AJ_G0039340.1 mouse_genomes_project 6 114868945 114869069 - Gm22882 snoRNA snoRNA MGP_AJ_T0015511.1 MGP_AJ_G0013606.1 mouse_genomes_project 6 99749506 99749962 + processed_pseudogene processed_pseudogene MGP_AJ_T0099084.1 MGP_AJ_G0037057.1 mouse_genomes_project 6 136378917 136379225 + Gm44258 sense_intronic sense_intronic MGP_AJ_T0011618.1 MGP_AJ_G0009740.1 mouse_genomes_project 6 3592070 3592250 + Gm27699 misc_RNA misc_RNA MGP_AJ_T0015658.1 MGP_AJ_G0013753.1 mouse_genomes_project 6 139060876 139061318 + processed_pseudogene processed_pseudogene MGP_AJ_T0008546.1 MGP_AJ_G0006916.1 mouse_genomes_project 6 27784040 27785841 + Gm13833 lincRNA lincRNA MGP_AJ_T0005058.1 MGP_AJ_G0004313.1 mouse_genomes_project 6 111347989 111349083 - Gm16161 antisense antisense MGP_AJ_T0080921.1 MGP_AJ_G0031436.1 mouse_genomes_project 6 141353038 141371281 + MGP_AJ_P0080921 Pyroxd1 protein_coding protein_coding MGP_AJ_T0080922.1 MGP_AJ_G0031436.1 mouse_genomes_project 6 141353051 141355259 + Pyroxd1 protein_coding retained_intron MGP_AJ_T0080923.1 MGP_AJ_G0031436.1 mouse_genomes_project 6 141353062 141370075 + Pyroxd1 protein_coding retained_intron MGP_AJ_T0080924.1 MGP_AJ_G0031436.1 mouse_genomes_project 6 141354320 141365544 + Pyroxd1 protein_coding processed_transcript MGP_AJ_T0080926.1 MGP_AJ_G0031436.1 mouse_genomes_project 6 141360323 141362075 + Pyroxd1 protein_coding retained_intron MGP_AJ_T0005113.1 MGP_AJ_G0004362.1 mouse_genomes_project 6 142226006 142246053 - 1700126G02Rik antisense antisense MGP_AJ_T0008633.1 MGP_AJ_G0006975.1 mouse_genomes_project 6 64624333 64647856 + Gm42889 lincRNA lincRNA MGP_AJ_T0077866.1 MGP_AJ_G0030781.1 mouse_genomes_project 6 54901861 54902858 - MGP_AJ_P0077866 Vmn1r23 protein_coding protein_coding MGP_AJ_T0008704.1 MGP_AJ_G0007031.1 mouse_genomes_project 6 99863081 99892206 + Gm9871 lincRNA lincRNA MGP_AJ_T0008705.1 MGP_AJ_G0007031.1 mouse_genomes_project 6 99876211 99892039 + Gm9871 lincRNA lincRNA MGP_AJ_T0008706.1 MGP_AJ_G0007031.1 mouse_genomes_project 6 99886497 99891834 + Gm9871 lincRNA lincRNA MGP_AJ_T0079832.1 MGP_AJ_G0031169.1 mouse_genomes_project 6 118344016 118383606 - B4galnt3 protein_coding processed_transcript MGP_AJ_T0079833.1 MGP_AJ_G0031169.1 mouse_genomes_project 6 118344037 118435606 - MGP_AJ_P0079833 B4galnt3 protein_coding protein_coding MGP_AJ_T0010770.1 MGP_AJ_G0008892.1 mouse_genomes_project 6 66998461 66998520 + miRNA miRNA MGP_AJ_T0077472.1 MGP_AJ_G0030673.1 mouse_genomes_project 6 45392381 45413672 + MGP_AJ_P0077472 Zfp775 protein_coding protein_coding MGP_AJ_T0077473.1 MGP_AJ_G0030673.1 mouse_genomes_project 6 45395950 45410234 + MGP_AJ_P0077473 Zfp775 protein_coding protein_coding MGP_AJ_T0077474.1 MGP_AJ_G0030673.1 mouse_genomes_project 6 45403679 45413672 + MGP_AJ_P0077474 Zfp775 protein_coding protein_coding MGP_AJ_T0008584.1 MGP_AJ_G0006937.1 mouse_genomes_project 6 35963885 35966313 + Gm43479 lincRNA lincRNA MGP_AJ_T0008643.1 MGP_AJ_G0006985.1 mouse_genomes_project 6 69882290 69887149 + Gm45050 lincRNA lincRNA MGP_AJ_T0102673.1 MGP_AJ_G0040415.1 mouse_genomes_project 6 39173605 39173747 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0079246.1 MGP_AJ_G0031066.1 mouse_genomes_project 6 105593814 105634529 + MGP_AJ_P0079246 Lrrn1 protein_coding protein_coding MGP_AJ_T0079514.1 MGP_AJ_G0031113.1 mouse_genomes_project 6 113091634 113125802 - MGP_AJ_P0079514 Tamm41 protein_coding protein_coding MGP_AJ_T0079515.1 MGP_AJ_G0031113.1 mouse_genomes_project 6 113091641 113099747 - Tamm41 protein_coding retained_intron MGP_AJ_T0079516.1 MGP_AJ_G0031113.1 mouse_genomes_project 6 113095402 113103585 - Tamm41 protein_coding retained_intron MGP_AJ_T0079517.1 MGP_AJ_G0031113.1 mouse_genomes_project 6 113098054 113120190 - MGP_AJ_P0079517 Tamm41 protein_coding nonsense_mediated_decay MGP_AJ_T0079518.1 MGP_AJ_G0031113.1 mouse_genomes_project 6 113099426 113125781 - MGP_AJ_P0079518 Tamm41 protein_coding protein_coding MGP_AJ_T0079519.1 MGP_AJ_G0031113.1 mouse_genomes_project 6 113103412 113125751 - MGP_AJ_P0079519 Tamm41 protein_coding nonsense_mediated_decay MGP_AJ_T0079520.1 MGP_AJ_G0031113.1 mouse_genomes_project 6 113112646 113125802 - Tamm41 protein_coding retained_intron MGP_AJ_T0079521.1 MGP_AJ_G0031113.1 mouse_genomes_project 6 113119203 113120191 - Tamm41 protein_coding processed_transcript MGP_AJ_T0101356.1 MGP_AJ_G0039322.1 mouse_genomes_project 6 69608349 69608486 - Gm22486 snoRNA snoRNA MGP_AJ_T0015362.1 MGP_AJ_G0013457.1 mouse_genomes_project 6 55507709 55508139 + processed_pseudogene processed_pseudogene MGP_AJ_T0081199.1 MGP_AJ_G0031482.1 mouse_genomes_project 6 147990806 148104851 - MGP_AJ_P0081199 Dennd5b protein_coding protein_coding MGP_AJ_T0081200.1 MGP_AJ_G0031482.1 mouse_genomes_project 6 148016469 148019809 - Dennd5b protein_coding retained_intron MGP_AJ_T0081201.1 MGP_AJ_G0031482.1 mouse_genomes_project 6 148016607 148104709 - Dennd5b protein_coding retained_intron MGP_AJ_T0081202.1 MGP_AJ_G0031482.1 mouse_genomes_project 6 148040383 148045162 - Dennd5b protein_coding retained_intron MGP_AJ_T0081203.1 MGP_AJ_G0031482.1 mouse_genomes_project 6 148070857 148083510 - MGP_AJ_P0081203 Dennd5b protein_coding protein_coding MGP_AJ_T0081204.1 MGP_AJ_G0031482.1 mouse_genomes_project 6 148070880 148104755 - MGP_AJ_P0081204 Dennd5b protein_coding protein_coding MGP_AJ_T0081205.1 MGP_AJ_G0031482.1 mouse_genomes_project 6 148084570 148087549 - Dennd5b protein_coding retained_intron MGP_AJ_T0081002.1 MGP_AJ_G0031450.1 mouse_genomes_project 6 144025252 144080858 - MGP_AJ_P0081002 Bcat1 protein_coding protein_coding MGP_AJ_T0081003.1 MGP_AJ_G0031450.1 mouse_genomes_project 6 144030662 144113441 - MGP_AJ_P0081003 Bcat1 protein_coding protein_coding MGP_AJ_T0081004.1 MGP_AJ_G0031450.1 mouse_genomes_project 6 144036778 144113441 - MGP_AJ_P0081004 Bcat1 protein_coding protein_coding MGP_AJ_T0081005.1 MGP_AJ_G0031450.1 mouse_genomes_project 6 144037058 144067159 - Bcat1 protein_coding processed_transcript MGP_AJ_T0081006.1 MGP_AJ_G0031450.1 mouse_genomes_project 6 144040720 144080656 - MGP_AJ_P0081006 Bcat1 protein_coding protein_coding MGP_AJ_T0081007.1 MGP_AJ_G0031450.1 mouse_genomes_project 6 144048634 144064329 - MGP_AJ_P0081007 Bcat1 protein_coding protein_coding MGP_AJ_T0081008.1 MGP_AJ_G0031450.1 mouse_genomes_project 6 144051979 144079901 - MGP_AJ_P0081008 Bcat1 protein_coding protein_coding MGP_AJ_T0081009.1 MGP_AJ_G0031450.1 mouse_genomes_project 6 144064275 144072913 - Bcat1 protein_coding processed_transcript MGP_AJ_T0081010.1 MGP_AJ_G0031450.1 mouse_genomes_project 6 144064294 144079709 - MGP_AJ_P0081010 Bcat1 protein_coding protein_coding MGP_AJ_T0081011.1 MGP_AJ_G0031450.1 mouse_genomes_project 6 144064358 144073025 - Bcat1 protein_coding processed_transcript MGP_AJ_T0079208.1 MGP_AJ_G0031060.1 mouse_genomes_project 6 101604340 101845437 + MGP_AJ_P0079208 Chl1 protein_coding protein_coding MGP_AJ_T0079209.1 MGP_AJ_G0031060.1 mouse_genomes_project 6 101604716 101745295 + Chl1 protein_coding retained_intron MGP_AJ_T0079210.1 MGP_AJ_G0031060.1 mouse_genomes_project 6 101604822 101826875 + MGP_AJ_P0079210 Chl1 protein_coding protein_coding MGP_AJ_T0079211.1 MGP_AJ_G0031060.1 mouse_genomes_project 6 101604928 101823287 + MGP_AJ_P0079211 Chl1 protein_coding protein_coding MGP_AJ_T0079212.1 MGP_AJ_G0031060.1 mouse_genomes_project 6 101605084 101765205 + MGP_AJ_P0079212 Chl1 protein_coding protein_coding MGP_AJ_T0079213.1 MGP_AJ_G0031060.1 mouse_genomes_project 6 101798397 101823644 + MGP_AJ_P0079213 Chl1 protein_coding protein_coding MGP_AJ_T0080614.1 MGP_AJ_G0031361.1 mouse_genomes_project 6 131433066 131433996 + MGP_AJ_P0080614 Tas2r124 protein_coding protein_coding MGP_AJ_T0002041.1 MGP_AJ_G0001954.1 mouse_genomes_project 6 81212146 81215695 - TEC TEC MGP_AJ_T0008729.1 MGP_AJ_G0007052.1 mouse_genomes_project 6 116412122 116420339 - Gm30498 lincRNA lincRNA MGP_AJ_T0102713.1 MGP_AJ_G0040455.1 mouse_genomes_project 6 122539201 122540676 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0080615.1 MGP_AJ_G0031362.1 mouse_genomes_project 6 131440551 131441595 + MGP_AJ_P0080615 Tas2r102 protein_coding protein_coding MGP_AJ_T0015669.1 MGP_AJ_G0013764.1 mouse_genomes_project 6 145795668 145797257 + processed_pseudogene processed_pseudogene MGP_AJ_T0080301.1 MGP_AJ_G0031264.1 mouse_genomes_project 6 123766438 123774571 - MGP_AJ_P0080301 Tuba3a protein_coding protein_coding MGP_AJ_T0015279.1 MGP_AJ_G0013374.1 mouse_genomes_project 6 20788653 20790671 - processed_pseudogene processed_pseudogene MGP_AJ_T0008660.1 MGP_AJ_G0006997.1 mouse_genomes_project 6 82040865 82104998 + Gm44127 lincRNA lincRNA MGP_AJ_T0076874.1 MGP_AJ_G0030519.1 mouse_genomes_project 6 27584239 27591156 - Tsga13 protein_coding processed_transcript MGP_AJ_T0076875.1 MGP_AJ_G0030519.1 mouse_genomes_project 6 27584239 27605594 - MGP_AJ_P0076875 Tsga13 protein_coding protein_coding MGP_AJ_T0076876.1 MGP_AJ_G0030519.1 mouse_genomes_project 6 27584473 27587744 - Tsga13 protein_coding retained_intron MGP_AJ_T0076516.1 MGP_AJ_G0030450.1 mouse_genomes_project 6 15487080 15492555 + MGP_AJ_P0076516 Lsm8 protein_coding protein_coding MGP_AJ_T0076517.1 MGP_AJ_G0030450.1 mouse_genomes_project 6 15487142 15494253 + Lsm8 protein_coding retained_intron MGP_AJ_T0076518.1 MGP_AJ_G0030450.1 mouse_genomes_project 6 15487157 15488909 + Lsm8 protein_coding retained_intron MGP_AJ_T0076519.1 MGP_AJ_G0030450.1 mouse_genomes_project 6 15487169 15492249 + MGP_AJ_P0076519 Lsm8 protein_coding protein_coding MGP_AJ_T0008533.1 MGP_AJ_G0006907.1 mouse_genomes_project 6 22546427 22593913 + Gm20756 lincRNA lincRNA MGP_AJ_T0008534.1 MGP_AJ_G0006907.1 mouse_genomes_project 6 22570749 22574424 + Gm20756 lincRNA lincRNA MGP_AJ_T0008700.1 MGP_AJ_G0007027.1 mouse_genomes_project 6 98607299 98608699 + Gm44107 lincRNA lincRNA MGP_AJ_T0078045.1 MGP_AJ_G0030829.1 mouse_genomes_project 6 69206651 69223754 + MGP_AJ_P0078045 Rnf103 protein_coding protein_coding MGP_AJ_T0078046.1 MGP_AJ_G0030829.1 mouse_genomes_project 6 69206667 69223754 + MGP_AJ_P0078046 Rnf103 protein_coding protein_coding MGP_AJ_T0078047.1 MGP_AJ_G0030829.1 mouse_genomes_project 6 69206760 69223636 + MGP_AJ_P0078047 Rnf103 protein_coding protein_coding MGP_AJ_T0078048.1 MGP_AJ_G0030829.1 mouse_genomes_project 6 69216636 69219987 + Rnf103 protein_coding retained_intron MGP_AJ_T0079656.1 MGP_AJ_G0031141.1 mouse_genomes_project 6 114671394 114674491 + MGP_AJ_P0079656 Olfr214 protein_coding protein_coding MGP_AJ_T0079657.1 MGP_AJ_G0031141.1 mouse_genomes_project 6 114673483 114674491 + MGP_AJ_P0079657 Olfr214 protein_coding protein_coding MGP_AJ_T0001933.1 MGP_AJ_G0001846.1 mouse_genomes_project 6 24043542 24046407 - TEC TEC MGP_AJ_T0077970.1 MGP_AJ_G0030806.1 mouse_genomes_project 6 63705004 63705909 - MGP_AJ_P0077970 protein_coding protein_coding MGP_AJ_T0000303.1 MGP_AJ_G0000247.1 mouse_genomes_project 6 66787421 66787884 + IG_V_pseudogene IG_V_pseudogene MGP_AJ_T0077808.1 MGP_AJ_G0030751.1 mouse_genomes_project 6 53684491 53731577 + MGP_AJ_P0077808 Fkbp9 protein_coding protein_coding MGP_AJ_T0077809.1 MGP_AJ_G0030751.1 mouse_genomes_project 6 53701563 53702891 + Fkbp9 protein_coding retained_intron MGP_AJ_T0076413.1 MGP_AJ_G0030437.1 mouse_genomes_project 6 11554439 12089258 + MGP_AJ_P0076413 Foxp2 protein_coding protein_coding MGP_AJ_T0076414.1 MGP_AJ_G0030437.1 mouse_genomes_project 6 11554478 12058035 + Foxp2 protein_coding retained_intron MGP_AJ_T0076415.1 MGP_AJ_G0030437.1 mouse_genomes_project 6 11554541 11638875 + Foxp2 protein_coding processed_transcript MGP_AJ_T0076416.1 MGP_AJ_G0030437.1 mouse_genomes_project 6 11554567 11934465 + MGP_AJ_P0076416 Foxp2 protein_coding protein_coding MGP_AJ_T0076417.1 MGP_AJ_G0030437.1 mouse_genomes_project 6 11554568 11935447 + Foxp2 protein_coding retained_intron MGP_AJ_T0076418.1 MGP_AJ_G0030437.1 mouse_genomes_project 6 11556551 11844951 + Foxp2 protein_coding processed_transcript MGP_AJ_T0076419.1 MGP_AJ_G0030437.1 mouse_genomes_project 6 11832711 11847341 + MGP_AJ_P0076419 Foxp2 protein_coding protein_coding MGP_AJ_T0076420.1 MGP_AJ_G0030437.1 mouse_genomes_project 6 11833495 12085322 + MGP_AJ_P0076420 Foxp2 protein_coding protein_coding MGP_AJ_T0076421.1 MGP_AJ_G0030437.1 mouse_genomes_project 6 11833495 12088482 + MGP_AJ_P0076421 Foxp2 protein_coding protein_coding MGP_AJ_T0076422.1 MGP_AJ_G0030437.1 mouse_genomes_project 6 11833495 12085603 + MGP_AJ_P0076422 Foxp2 protein_coding protein_coding MGP_AJ_T0076423.1 MGP_AJ_G0030437.1 mouse_genomes_project 6 11833552 12040938 + MGP_AJ_P0076423 Foxp2 protein_coding protein_coding MGP_AJ_T0076424.1 MGP_AJ_G0030437.1 mouse_genomes_project 6 11844940 12043966 + Foxp2 protein_coding retained_intron MGP_AJ_T0076425.1 MGP_AJ_G0030437.1 mouse_genomes_project 6 11844942 12027070 + MGP_AJ_P0076425 Foxp2 protein_coding protein_coding MGP_AJ_T0076426.1 MGP_AJ_G0030437.1 mouse_genomes_project 6 11844942 12051772 + MGP_AJ_P0076426 Foxp2 protein_coding protein_coding MGP_AJ_T0076427.1 MGP_AJ_G0030437.1 mouse_genomes_project 6 11844955 12051772 + MGP_AJ_P0076427 Foxp2 protein_coding protein_coding MGP_AJ_T0076428.1 MGP_AJ_G0030437.1 mouse_genomes_project 6 11902210 11934465 + Foxp2 protein_coding processed_transcript MGP_AJ_T0076429.1 MGP_AJ_G0030437.1 mouse_genomes_project 6 11971885 11973063 + Foxp2 protein_coding retained_intron MGP_AJ_T0076430.1 MGP_AJ_G0030437.1 mouse_genomes_project 6 12023939 12025339 + Foxp2 protein_coding processed_transcript MGP_AJ_T0076431.1 MGP_AJ_G0030437.1 mouse_genomes_project 6 12023939 12086347 + MGP_AJ_P0076431 Foxp2 protein_coding nonsense_mediated_decay MGP_AJ_T0100070.1 MGP_AJ_G0038036.1 mouse_genomes_project 6 3699190 3699352 - Gm22155 snRNA snRNA MGP_AJ_T0005111.1 MGP_AJ_G0004360.1 mouse_genomes_project 6 140217906 140220965 - Gm28523 antisense antisense MGP_AJ_T0076522.1 MGP_AJ_G0030452.1 mouse_genomes_project 6 17886601 18406499 + MGP_AJ_P0076522 Kcnd2 protein_coding protein_coding MGP_AJ_T0000293.1 MGP_AJ_G0000237.1 mouse_genomes_project 6 66070779 66071190 - IG_V_pseudogene IG_V_pseudogene MGP_AJ_T0008561.1 MGP_AJ_G0006924.1 mouse_genomes_project 6 28390355 28394777 - Gm43293 lincRNA lincRNA MGP_AJ_T0010800.1 MGP_AJ_G0008922.1 mouse_genomes_project 6 116044501 116044622 - Gm25535 miRNA miRNA MGP_AJ_T0078615.1 MGP_AJ_G0030939.1 mouse_genomes_project 6 84270480 84278499 + MGP_AJ_P0078615 Snrpg protein_coding protein_coding MGP_AJ_T0078616.1 MGP_AJ_G0030939.1 mouse_genomes_project 6 84270718 84275926 + Snrpg protein_coding retained_intron MGP_AJ_T0078617.1 MGP_AJ_G0030939.1 mouse_genomes_project 6 84270747 84278078 + Snrpg protein_coding processed_transcript MGP_AJ_T0078618.1 MGP_AJ_G0030939.1 mouse_genomes_project 6 84270780 84278029 + Snrpg protein_coding processed_transcript MGP_AJ_T0100097.1 MGP_AJ_G0038063.1 mouse_genomes_project 6 76658234 76658398 + Gm23727 snRNA snRNA MGP_AJ_T0079477.1 MGP_AJ_G0031108.1 mouse_genomes_project 6 112216319 112335021 + MGP_AJ_P0079477 Slc6a11 protein_coding protein_coding MGP_AJ_T0079478.1 MGP_AJ_G0031108.1 mouse_genomes_project 6 112216497 112217514 + Slc6a11 protein_coding retained_intron MGP_AJ_T0079724.1 MGP_AJ_G0031157.1 mouse_genomes_project 6 116616114 116677456 - MGP_AJ_P0079724 Ankrd26 protein_coding protein_coding MGP_AJ_T0079725.1 MGP_AJ_G0031157.1 mouse_genomes_project 6 116632898 116637975 - Ankrd26 protein_coding retained_intron MGP_AJ_T0079726.1 MGP_AJ_G0031157.1 mouse_genomes_project 6 116658043 116664323 - Ankrd26 protein_coding retained_intron MGP_AJ_T0080569.1 MGP_AJ_G0031336.1 mouse_genomes_project 6 128587335 128602807 - MGP_AJ_P0080569 Klra7 protein_coding protein_coding MGP_AJ_T0004931.1 MGP_AJ_G0004233.1 mouse_genomes_project 6 35783097 35786818 - 1700025N23Rik antisense antisense MGP_AJ_T0078715.1 MGP_AJ_G0030954.1 mouse_genomes_project 6 85055467 85255656 - MGP_AJ_P0078715 Antxr1 protein_coding protein_coding MGP_AJ_T0078716.1 MGP_AJ_G0030954.1 mouse_genomes_project 6 85055470 85227292 - MGP_AJ_P0078716 Antxr1 protein_coding nonsense_mediated_decay MGP_AJ_T0078717.1 MGP_AJ_G0030954.1 mouse_genomes_project 6 85079370 85255616 - MGP_AJ_P0078717 Antxr1 protein_coding protein_coding MGP_AJ_T0078718.1 MGP_AJ_G0030954.1 mouse_genomes_project 6 85100017 85255656 - MGP_AJ_P0078718 Antxr1 protein_coding protein_coding MGP_AJ_T0078719.1 MGP_AJ_G0030954.1 mouse_genomes_project 6 85120165 85189180 - Antxr1 protein_coding processed_transcript MGP_AJ_T0078720.1 MGP_AJ_G0030954.1 mouse_genomes_project 6 85199457 85255713 - Antxr1 protein_coding retained_intron MGP_AJ_T0001965.1 MGP_AJ_G0001878.1 mouse_genomes_project 6 42057658 42058922 + TEC TEC MGP_AJ_T0001932.1 MGP_AJ_G0001845.1 mouse_genomes_project 6 21297805 21300671 - TEC TEC MGP_AJ_T0079561.1 MGP_AJ_G0031123.1 mouse_genomes_project 6 113823279 113852981 - MGP_AJ_P0079561 Tmem40 protein_coding protein_coding MGP_AJ_T0079562.1 MGP_AJ_G0031123.1 mouse_genomes_project 6 113823291 113828673 - Tmem40 protein_coding processed_transcript MGP_AJ_T0079563.1 MGP_AJ_G0031123.1 mouse_genomes_project 6 113823681 113829015 - Tmem40 protein_coding retained_intron MGP_AJ_T0079564.1 MGP_AJ_G0031123.1 mouse_genomes_project 6 113823813 113858526 - MGP_AJ_P0079564 Tmem40 protein_coding protein_coding MGP_AJ_T0078275.1 MGP_AJ_G0030874.1 mouse_genomes_project 6 80405719 80490900 - Pole4 protein_coding processed_transcript MGP_AJ_T0078276.1 MGP_AJ_G0030874.1 mouse_genomes_project 6 80408588 80435745 - MGP_AJ_P0078276 Pole4 protein_coding protein_coding MGP_AJ_T0078277.1 MGP_AJ_G0030874.1 mouse_genomes_project 6 80430586 80435714 - MGP_AJ_P0078277 Pole4 protein_coding protein_coding MGP_AJ_T0005116.1 MGP_AJ_G0004365.1 mouse_genomes_project 6 143711220 143732173 + Sox5os3 antisense antisense MGP_AJ_T0005117.1 MGP_AJ_G0004365.1 mouse_genomes_project 6 143718044 143731923 + Sox5os3 antisense antisense MGP_AJ_T0015345.1 MGP_AJ_G0013440.1 mouse_genomes_project 6 47400847 47401219 + processed_pseudogene processed_pseudogene MGP_AJ_T0076577.1 MGP_AJ_G0030462.1 mouse_genomes_project 6 20299729 20301166 - MGP_AJ_P0076577 Rnf133 protein_coding protein_coding MGP_AJ_T0076578.1 MGP_AJ_G0030462.1 mouse_genomes_project 6 20299734 20301067 - MGP_AJ_P0076578 Rnf133 protein_coding protein_coding MGP_AJ_T0015374.1 MGP_AJ_G0013469.1 mouse_genomes_project 6 59645572 59646704 + processed_pseudogene processed_pseudogene MGP_AJ_T0015351.1 MGP_AJ_G0013446.1 mouse_genomes_project 6 49580504 49580805 - processed_pseudogene processed_pseudogene MGP_AJ_T0077344.1 MGP_AJ_G0030646.1 mouse_genomes_project 6 39961681 39962623 + MGP_AJ_P0077344 Olfr435 protein_coding protein_coding MGP_AJ_T0015257.1 MGP_AJ_G0013352.1 mouse_genomes_project 6 12738888 12739162 - processed_pseudogene processed_pseudogene MGP_AJ_T0077497.1 MGP_AJ_G0030681.1 mouse_genomes_project 6 45530511 45536147 + MGP_AJ_P0077497 Gimap1 protein_coding protein_coding MGP_AJ_T0077499.1 MGP_AJ_G0030681.1 mouse_genomes_project 6 45530530 45535092 + MGP_AJ_P0077499 Gimap1 protein_coding protein_coding MGP_AJ_T0077500.1 MGP_AJ_G0030681.1 mouse_genomes_project 6 45530533 45536151 + MGP_AJ_P0077500 Gimap1 protein_coding protein_coding MGP_AJ_T0077501.1 MGP_AJ_G0030681.1 mouse_genomes_project 6 45530544 45532428 + Gimap1 protein_coding retained_intron MGP_AJ_T0077502.1 MGP_AJ_G0030681.1 mouse_genomes_project 6 45530564 45534165 + Gimap1 protein_coding retained_intron MGP_AJ_T0077503.1 MGP_AJ_G0030681.1 mouse_genomes_project 6 45534550 45536152 + Gimap1 protein_coding retained_intron MGP_AJ_T0080378.1 MGP_AJ_G0031284.1 mouse_genomes_project 6 125647466 125673385 - MGP_AJ_P0080378 Ccnd2 protein_coding protein_coding MGP_AJ_T0080379.1 MGP_AJ_G0031284.1 mouse_genomes_project 6 125652801 125661464 - Ccnd2 protein_coding processed_transcript MGP_AJ_T0080380.1 MGP_AJ_G0031284.1 mouse_genomes_project 6 125661404 125669008 - Ccnd2 protein_coding processed_transcript MGP_AJ_T0080381.1 MGP_AJ_G0031284.1 mouse_genomes_project 6 125668342 125674518 - MGP_AJ_P0080381 Ccnd2 protein_coding protein_coding MGP_AJ_T0080382.1 MGP_AJ_G0031284.1 mouse_genomes_project 6 125669821 125673332 - Ccnd2 protein_coding retained_intron MGP_AJ_T0080383.1 MGP_AJ_G0031284.1 mouse_genomes_project 6 125670602 125673358 - MGP_AJ_P0080383 Ccnd2 protein_coding protein_coding MGP_AJ_T0080384.1 MGP_AJ_G0031284.1 mouse_genomes_project 6 125670619 125673332 - MGP_AJ_P0080384 Ccnd2 protein_coding protein_coding MGP_AJ_T0080385.1 MGP_AJ_G0031284.1 mouse_genomes_project 6 125673105 125673286 - Ccnd2 protein_coding processed_transcript MGP_AJ_T0000281.1 MGP_AJ_G0000225.1 mouse_genomes_project 6 65590076 65590374 + IG_V_pseudogene IG_V_pseudogene MGP_AJ_T0008800.1 MGP_AJ_G0007104.1 mouse_genomes_project 6 147909236 147914554 - Gm43913 lincRNA lincRNA MGP_AJ_T0079272.1 MGP_AJ_G0031072.1 mouse_genomes_project 6 106912000 106942987 + MGP_AJ_P0079272 Edem1 protein_coding nonsense_mediated_decay MGP_AJ_T0079273.1 MGP_AJ_G0031072.1 mouse_genomes_project 6 106912033 106942979 + MGP_AJ_P0079273 Edem1 protein_coding protein_coding MGP_AJ_T0079274.1 MGP_AJ_G0031072.1 mouse_genomes_project 6 106920211 106926866 + Edem1 protein_coding processed_transcript MGP_AJ_T0079275.1 MGP_AJ_G0031072.1 mouse_genomes_project 6 106932315 106935279 + Edem1 protein_coding retained_intron MGP_AJ_T0079276.1 MGP_AJ_G0031072.1 mouse_genomes_project 6 106936027 106939174 + Edem1 protein_coding retained_intron MGP_AJ_T0076599.1 MGP_AJ_G0030472.1 mouse_genomes_project 6 21384676 21405127 + MGP_AJ_P0076599 Hyal4 protein_coding protein_coding MGP_AJ_T0101362.1 MGP_AJ_G0039328.1 mouse_genomes_project 6 88896805 88896901 + Gm25185 snoRNA snoRNA MGP_AJ_T0015422.1 MGP_AJ_G0013517.1 mouse_genomes_project 6 65529846 65530574 + processed_pseudogene processed_pseudogene MGP_AJ_T0002072.1 MGP_AJ_G0001985.1 mouse_genomes_project 6 86867685 86870615 + TEC TEC MGP_AJ_T0080744.1 MGP_AJ_G0031400.1 mouse_genomes_project 6 135546951 135626971 - MGP_AJ_P0080744 Gucy2c protein_coding protein_coding MGP_AJ_T0080745.1 MGP_AJ_G0031400.1 mouse_genomes_project 6 135546952 135626948 - MGP_AJ_P0080745 Gucy2c protein_coding protein_coding MGP_AJ_T0000022.1 MGP_AJ_G0000015.1 mouse_genomes_project 6 68431658 68432190 + MGP_AJ_P0000022 Igkc IG_C_gene IG_C_gene MGP_AJ_T0078422.1 MGP_AJ_G0030902.1 mouse_genomes_project 6 81310472 81333331 - MGP_AJ_P0078422 Actg2 protein_coding protein_coding MGP_AJ_T0078423.1 MGP_AJ_G0030902.1 mouse_genomes_project 6 81310479 81325280 - MGP_AJ_P0078423 Actg2 protein_coding protein_coding MGP_AJ_T0078424.1 MGP_AJ_G0030902.1 mouse_genomes_project 6 81317274 81324209 - Actg2 protein_coding processed_transcript MGP_AJ_T0078425.1 MGP_AJ_G0030902.1 mouse_genomes_project 6 81317274 81333289 - MGP_AJ_P0078425 Actg2 protein_coding protein_coding MGP_AJ_T0078426.1 MGP_AJ_G0030902.1 mouse_genomes_project 6 81317415 81324780 - MGP_AJ_P0078426 Actg2 protein_coding protein_coding MGP_AJ_T0078427.1 MGP_AJ_G0030902.1 mouse_genomes_project 6 81318191 81325100 - MGP_AJ_P0078427 Actg2 protein_coding protein_coding MGP_AJ_T0076668.1 MGP_AJ_G0030489.1 mouse_genomes_project 6 25832773 25848662 - MGP_AJ_P0076668 Impdh1 protein_coding protein_coding MGP_AJ_T0076669.1 MGP_AJ_G0030489.1 mouse_genomes_project 6 25832776 25844628 - MGP_AJ_P0076669 Impdh1 protein_coding protein_coding MGP_AJ_T0076670.1 MGP_AJ_G0030489.1 mouse_genomes_project 6 25832776 25848695 - MGP_AJ_P0076670 Impdh1 protein_coding protein_coding MGP_AJ_T0076671.1 MGP_AJ_G0030489.1 mouse_genomes_project 6 25832776 25844580 - MGP_AJ_P0076671 Impdh1 protein_coding protein_coding MGP_AJ_T0076672.1 MGP_AJ_G0030489.1 mouse_genomes_project 6 25832777 25848673 - MGP_AJ_P0076672 Impdh1 protein_coding protein_coding MGP_AJ_T0076673.1 MGP_AJ_G0030489.1 mouse_genomes_project 6 25832784 25835758 - MGP_AJ_P0076673 Impdh1 protein_coding protein_coding MGP_AJ_T0076674.1 MGP_AJ_G0030489.1 mouse_genomes_project 6 25836899 25838775 - Impdh1 protein_coding retained_intron MGP_AJ_T0076675.1 MGP_AJ_G0030489.1 mouse_genomes_project 6 25837444 25848608 - MGP_AJ_P0076675 Impdh1 protein_coding protein_coding MGP_AJ_T0076676.1 MGP_AJ_G0030489.1 mouse_genomes_project 6 25839164 25841948 - Impdh1 protein_coding retained_intron MGP_AJ_T0076677.1 MGP_AJ_G0030489.1 mouse_genomes_project 6 25839330 25848260 - MGP_AJ_P0076677 Impdh1 protein_coding protein_coding MGP_AJ_T0002120.1 MGP_AJ_G0002033.1 mouse_genomes_project 6 111756957 111759445 - TEC TEC MGP_AJ_T0008641.1 MGP_AJ_G0006983.1 mouse_genomes_project 6 69165009 69171954 + Gm44172 lincRNA lincRNA MGP_AJ_T0102698.1 MGP_AJ_G0040440.1 mouse_genomes_project 6 68149954 68150102 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0080165.1 MGP_AJ_G0031244.1 mouse_genomes_project 6 123344663 123350062 - MGP_AJ_P0080165 Gpr162 protein_coding protein_coding MGP_AJ_T0080166.1 MGP_AJ_G0031244.1 mouse_genomes_project 6 123344666 123349857 - Gpr162 protein_coding retained_intron MGP_AJ_T0080167.1 MGP_AJ_G0031244.1 mouse_genomes_project 6 123344667 123350128 - MGP_AJ_P0080167 Gpr162 protein_coding protein_coding MGP_AJ_T0080168.1 MGP_AJ_G0031244.1 mouse_genomes_project 6 123347874 123349857 - Gpr162 protein_coding processed_transcript MGP_AJ_T0005028.1 MGP_AJ_G0004296.1 mouse_genomes_project 6 86788079 86792556 + Gm15612 antisense antisense MGP_AJ_T0077463.1 MGP_AJ_G0030671.1 mouse_genomes_project 6 45384257 45389428 + MGP_AJ_P0077463 Repin1 protein_coding protein_coding MGP_AJ_T0077464.1 MGP_AJ_G0030671.1 mouse_genomes_project 6 45384257 45389428 + MGP_AJ_P0077464 Repin1 protein_coding protein_coding MGP_AJ_T0077465.1 MGP_AJ_G0030671.1 mouse_genomes_project 6 45384257 45387745 + MGP_AJ_P0077465 Repin1 protein_coding protein_coding MGP_AJ_T0077466.1 MGP_AJ_G0030671.1 mouse_genomes_project 6 45384265 45389429 + MGP_AJ_P0077466 Repin1 protein_coding protein_coding MGP_AJ_T0077467.1 MGP_AJ_G0030671.1 mouse_genomes_project 6 45384274 45389428 + MGP_AJ_P0077467 Repin1 protein_coding protein_coding MGP_AJ_T0077468.1 MGP_AJ_G0030671.1 mouse_genomes_project 6 45384314 45385708 + Repin1 protein_coding retained_intron MGP_AJ_T0077471.1 MGP_AJ_G0030671.1 mouse_genomes_project 6 45384693 45386981 + Repin1 protein_coding retained_intron MGP_AJ_T0010787.1 MGP_AJ_G0008909.1 mouse_genomes_project 6 92934646 92934714 + Gm23364 miRNA miRNA MGP_AJ_T0077248.1 MGP_AJ_G0030608.1 mouse_genomes_project 6 38537980 38542028 - MGP_AJ_P0077248 Olfr459 protein_coding protein_coding MGP_AJ_T0077249.1 MGP_AJ_G0030608.1 mouse_genomes_project 6 38537980 38539089 - MGP_AJ_P0077249 Olfr459 protein_coding protein_coding MGP_AJ_T0080316.1 MGP_AJ_G0031269.1 mouse_genomes_project 6 123947797 123984125 - MGP_AJ_P0080316 Cd9 protein_coding protein_coding MGP_AJ_T0080317.1 MGP_AJ_G0031269.1 mouse_genomes_project 6 123948231 123966362 - Cd9 protein_coding processed_transcript MGP_AJ_T0080318.1 MGP_AJ_G0031269.1 mouse_genomes_project 6 123949758 123950716 - Cd9 protein_coding retained_intron MGP_AJ_T0102731.1 MGP_AJ_G0040472.1 mouse_genomes_project 6 131594291 131595220 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0077311.1 MGP_AJ_G0030628.1 mouse_genomes_project 6 39212956 39214008 - MGP_AJ_P0077311 Olfr456 protein_coding protein_coding MGP_AJ_T0008764.1 MGP_AJ_G0007078.1 mouse_genomes_project 6 134135562 134142810 - Gm44275 lincRNA lincRNA MGP_AJ_T0080319.1 MGP_AJ_G0031270.1 mouse_genomes_project 6 124038405 124084933 + MGP_AJ_P0080319 Vwf protein_coding protein_coding MGP_AJ_T0080320.1 MGP_AJ_G0031270.1 mouse_genomes_project 6 124044660 124181659 + MGP_AJ_P0080320 Vwf protein_coding protein_coding MGP_AJ_T0080321.1 MGP_AJ_G0031270.1 mouse_genomes_project 6 124044675 124097631 + Vwf protein_coding retained_intron MGP_AJ_T0080322.1 MGP_AJ_G0031270.1 mouse_genomes_project 6 124044675 124085230 + MGP_AJ_P0080322 Vwf protein_coding protein_coding MGP_AJ_T0080323.1 MGP_AJ_G0031270.1 mouse_genomes_project 6 124058279 124071137 + Vwf protein_coding processed_transcript MGP_AJ_T0080324.1 MGP_AJ_G0031270.1 mouse_genomes_project 6 124096404 124136230 + Vwf protein_coding processed_transcript MGP_AJ_T0080325.1 MGP_AJ_G0031270.1 mouse_genomes_project 6 124127721 124130020 + Vwf protein_coding retained_intron MGP_AJ_T0080326.1 MGP_AJ_G0031270.1 mouse_genomes_project 6 124139644 124155393 + Vwf protein_coding retained_intron MGP_AJ_T0080327.1 MGP_AJ_G0031270.1 mouse_genomes_project 6 124142694 124181652 + MGP_AJ_P0080327 Vwf protein_coding nonsense_mediated_decay MGP_AJ_T0080328.1 MGP_AJ_G0031270.1 mouse_genomes_project 6 124148356 124150053 + Vwf protein_coding retained_intron MGP_AJ_T0080329.1 MGP_AJ_G0031270.1 mouse_genomes_project 6 124180716 124181615 + Vwf protein_coding processed_transcript MGP_AJ_T0010810.1 MGP_AJ_G0008932.1 mouse_genomes_project 6 123681043 123681130 + Mir3098 miRNA miRNA MGP_AJ_T0002108.1 MGP_AJ_G0002021.1 mouse_genomes_project 6 100002450 100005109 + TEC TEC MGP_AJ_T0080713.1 MGP_AJ_G0031395.1 mouse_genomes_project 6 134185154 134205862 + MGP_AJ_P0080713 Emp1 protein_coding protein_coding MGP_AJ_T0080714.1 MGP_AJ_G0031395.1 mouse_genomes_project 6 134185539 134205862 + MGP_AJ_P0080714 Emp1 protein_coding protein_coding MGP_AJ_T0080715.1 MGP_AJ_G0031395.1 mouse_genomes_project 6 134185539 134205862 + MGP_AJ_P0080715 Emp1 protein_coding nonsense_mediated_decay MGP_AJ_T0080716.1 MGP_AJ_G0031395.1 mouse_genomes_project 6 134185616 134203062 + Emp1 protein_coding retained_intron MGP_AJ_T0080717.1 MGP_AJ_G0031395.1 mouse_genomes_project 6 134185676 134188277 + Emp1 protein_coding retained_intron MGP_AJ_T0080718.1 MGP_AJ_G0031395.1 mouse_genomes_project 6 134190130 134205862 + MGP_AJ_P0080718 Emp1 protein_coding protein_coding MGP_AJ_T0102693.1 MGP_AJ_G0040435.1 mouse_genomes_project 6 55545678 55546578 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0005059.1 MGP_AJ_G0004314.1 mouse_genomes_project 6 111380643 111399632 - Gm15492 antisense antisense MGP_AJ_T0002000.1 MGP_AJ_G0001913.1 mouse_genomes_project 6 68815869 68816775 - TEC TEC MGP_AJ_T0001991.1 MGP_AJ_G0001904.1 mouse_genomes_project 6 53651085 53652684 + TEC TEC MGP_AJ_T0076922.1 MGP_AJ_G0030528.1 mouse_genomes_project 6 30846666 30870400 - MGP_AJ_P0076922 Slc35b4 protein_coding protein_coding MGP_AJ_T0076923.1 MGP_AJ_G0030528.1 mouse_genomes_project 6 30850009 30856771 - Slc35b4 protein_coding retained_intron MGP_AJ_T0076924.1 MGP_AJ_G0030528.1 mouse_genomes_project 6 30851371 30870259 - Slc35b4 protein_coding retained_intron MGP_AJ_T0076925.1 MGP_AJ_G0030528.1 mouse_genomes_project 6 30853804 30870371 - MGP_AJ_P0076925 Slc35b4 protein_coding nonsense_mediated_decay MGP_AJ_T0008768.1 MGP_AJ_G0007081.1 mouse_genomes_project 6 138272321 138279314 - 4922502N22Rik lincRNA lincRNA MGP_AJ_T0008738.1 MGP_AJ_G0007061.1 mouse_genomes_project 6 124834631 124837537 + Gm29009 lincRNA lincRNA MGP_AJ_T0008650.1 MGP_AJ_G0006992.1 mouse_genomes_project 6 79681845 79688552 - 1700009C05Rik lincRNA lincRNA MGP_AJ_T0001967.1 MGP_AJ_G0001880.1 mouse_genomes_project 6 42086450 42087005 + TEC TEC MGP_AJ_T0018301.1 MGP_AJ_G0015621.1 mouse_genomes_project 6 114437009 114439239 - Gm44957 processed_transcript retained_intron MGP_AJ_T0018302.1 MGP_AJ_G0015621.1 mouse_genomes_project 6 114437024 114439726 - Gm44957 processed_transcript bidirectional_promoter_lncRNA MGP_AJ_T0015532.1 MGP_AJ_G0013627.1 mouse_genomes_project 6 108105856 108106400 + processed_pseudogene processed_pseudogene MGP_AJ_T0015341.1 MGP_AJ_G0013436.1 mouse_genomes_project 6 46236927 46237751 - processed_pseudogene processed_pseudogene MGP_AJ_T0015313.1 MGP_AJ_G0013408.1 mouse_genomes_project 6 39243452 39244250 - processed_pseudogene processed_pseudogene MGP_AJ_T0080003.1 MGP_AJ_G0031206.1 mouse_genomes_project 6 121296185 121310392 + MGP_AJ_P0080003 Clec4a3 protein_coding protein_coding MGP_AJ_T0080004.1 MGP_AJ_G0031206.1 mouse_genomes_project 6 121296314 121310391 + MGP_AJ_P0080004 Clec4a3 protein_coding protein_coding MGP_AJ_T0080005.1 MGP_AJ_G0031206.1 mouse_genomes_project 6 121296448 121306316 + MGP_AJ_P0080005 Clec4a3 protein_coding protein_coding MGP_AJ_T0008511.1 MGP_AJ_G0006891.1 mouse_genomes_project 6 3727105 3730808 - Gm26774 lincRNA lincRNA MGP_AJ_T0076899.1 MGP_AJ_G0030525.1 mouse_genomes_project 6 29468744 29581056 - MGP_AJ_P0076899 Chchd3 protein_coding protein_coding MGP_AJ_T0076900.1 MGP_AJ_G0030525.1 mouse_genomes_project 6 29469985 29752463 - MGP_AJ_P0076900 Chchd3 protein_coding protein_coding MGP_AJ_T0076901.1 MGP_AJ_G0030525.1 mouse_genomes_project 6 29469992 29752439 - MGP_AJ_P0076901 Chchd3 protein_coding nonsense_mediated_decay MGP_AJ_T0076902.1 MGP_AJ_G0030525.1 mouse_genomes_project 6 29470405 29586576 - Chchd3 protein_coding processed_transcript MGP_AJ_T0076903.1 MGP_AJ_G0030525.1 mouse_genomes_project 6 29470410 29586533 - Chchd3 protein_coding processed_transcript MGP_AJ_T0076904.1 MGP_AJ_G0030525.1 mouse_genomes_project 6 29470411 29586526 - Chchd3 protein_coding processed_transcript MGP_AJ_T0076905.1 MGP_AJ_G0030525.1 mouse_genomes_project 6 29470422 29485739 - Chchd3 protein_coding processed_transcript MGP_AJ_T0076906.1 MGP_AJ_G0030525.1 mouse_genomes_project 6 29470462 29501852 - Chchd3 protein_coding processed_transcript MGP_AJ_T0076907.1 MGP_AJ_G0030525.1 mouse_genomes_project 6 29485734 29752440 - MGP_AJ_P0076907 Chchd3 protein_coding protein_coding MGP_AJ_T0076908.1 MGP_AJ_G0030525.1 mouse_genomes_project 6 29541282 29752420 - MGP_AJ_P0076908 Chchd3 protein_coding protein_coding MGP_AJ_T0002013.1 MGP_AJ_G0001926.1 mouse_genomes_project 6 70381904 70383185 + TEC TEC MGP_AJ_T0076866.1 MGP_AJ_G0030518.1 mouse_genomes_project 6 27423003 27583998 - MGP_AJ_P0076866 Copg2 protein_coding protein_coding MGP_AJ_T0076867.1 MGP_AJ_G0030518.1 mouse_genomes_project 6 27423861 27584053 - MGP_AJ_P0076867 Copg2 protein_coding protein_coding MGP_AJ_T0076868.1 MGP_AJ_G0030518.1 mouse_genomes_project 6 27509703 27583969 - Copg2 protein_coding processed_transcript MGP_AJ_T0076869.1 MGP_AJ_G0030518.1 mouse_genomes_project 6 27510193 27584023 - Copg2 protein_coding processed_transcript MGP_AJ_T0076870.1 MGP_AJ_G0030518.1 mouse_genomes_project 6 27544414 27583989 - Copg2 protein_coding processed_transcript MGP_AJ_T0076871.1 MGP_AJ_G0030518.1 mouse_genomes_project 6 27544790 27583685 - Copg2 protein_coding processed_transcript MGP_AJ_T0076872.1 MGP_AJ_G0030518.1 mouse_genomes_project 6 27582155 27583696 - Copg2 protein_coding processed_transcript MGP_AJ_T0076873.1 MGP_AJ_G0030518.1 mouse_genomes_project 6 27583373 27584007 - Copg2 protein_coding processed_transcript MGP_AJ_T0080260.1 MGP_AJ_G0031258.1 mouse_genomes_project 6 123646353 123649924 - Gapdh protein_coding retained_intron MGP_AJ_T0080261.1 MGP_AJ_G0031258.1 mouse_genomes_project 6 123646483 123650522 - MGP_AJ_P0080261 Gapdh protein_coding protein_coding MGP_AJ_T0080262.1 MGP_AJ_G0031258.1 mouse_genomes_project 6 123646491 123647465 - Gapdh protein_coding retained_intron MGP_AJ_T0080263.1 MGP_AJ_G0031258.1 mouse_genomes_project 6 123646491 123651423 - MGP_AJ_P0080263 Gapdh protein_coding protein_coding MGP_AJ_T0080264.1 MGP_AJ_G0031258.1 mouse_genomes_project 6 123646492 123651423 - MGP_AJ_P0080264 Gapdh protein_coding protein_coding MGP_AJ_T0080265.1 MGP_AJ_G0031258.1 mouse_genomes_project 6 123646492 123650694 - MGP_AJ_P0080265 Gapdh protein_coding protein_coding MGP_AJ_T0080266.1 MGP_AJ_G0031258.1 mouse_genomes_project 6 123647691 123648260 - Gapdh protein_coding retained_intron MGP_AJ_T0080267.1 MGP_AJ_G0031258.1 mouse_genomes_project 6 123647763 123649837 - Gapdh protein_coding processed_transcript MGP_AJ_T0080268.1 MGP_AJ_G0031258.1 mouse_genomes_project 6 123647791 123650511 - Gapdh protein_coding processed_transcript MGP_AJ_T0080269.1 MGP_AJ_G0031258.1 mouse_genomes_project 6 123648230 123650524 - MGP_AJ_P0080269 Gapdh protein_coding protein_coding MGP_AJ_T0080270.1 MGP_AJ_G0031258.1 mouse_genomes_project 6 123648266 123650524 - Gapdh protein_coding processed_transcript MGP_AJ_T0080271.1 MGP_AJ_G0031258.1 mouse_genomes_project 6 123649517 123650526 - Gapdh protein_coding retained_intron MGP_AJ_T0000306.1 MGP_AJ_G0000250.1 mouse_genomes_project 6 67152221 67152748 - IG_V_pseudogene IG_V_pseudogene MGP_AJ_T0011665.1 MGP_AJ_G0009787.1 mouse_genomes_project 6 110064550 110064865 + Gm26362 misc_RNA misc_RNA MGP_AJ_T0002054.1 MGP_AJ_G0001967.1 mouse_genomes_project 6 85093586 85095637 - TEC TEC MGP_AJ_T0080038.1 MGP_AJ_G0031221.1 mouse_genomes_project 6 122695937 122722464 + MGP_AJ_P0080038 Cd163 protein_coding protein_coding MGP_AJ_T0080039.1 MGP_AJ_G0031221.1 mouse_genomes_project 6 122695981 122722464 + MGP_AJ_P0080039 Cd163 protein_coding protein_coding MGP_AJ_T0080040.1 MGP_AJ_G0031221.1 mouse_genomes_project 6 122712423 122722456 + Cd163 protein_coding retained_intron MGP_AJ_T0000200.1 MGP_AJ_G0000151.1 mouse_genomes_project 6 67707837 67708088 - MGP_AJ_P0000200 Igkv8-28 IG_V_gene IG_V_gene MGP_AJ_T0000201.1 MGP_AJ_G0000151.1 mouse_genomes_project 6 67707837 67708357 - MGP_AJ_P0000201 Igkv8-28 IG_V_gene IG_V_gene MGP_AJ_T0079065.1 MGP_AJ_G0031031.1 mouse_genomes_project 6 90947033 90962125 + MGP_AJ_P0079065 Gm15737 protein_coding protein_coding MGP_AJ_T0078906.1 MGP_AJ_G0030992.1 mouse_genomes_project 6 87886895 87898376 + MGP_AJ_P0078906 Vmn1r44 protein_coding protein_coding MGP_AJ_T0078907.1 MGP_AJ_G0030992.1 mouse_genomes_project 6 87898068 87899176 + MGP_AJ_P0078907 Vmn1r44 protein_coding protein_coding MGP_AJ_T0015336.1 MGP_AJ_G0013431.1 mouse_genomes_project 6 45788073 45790503 + processed_pseudogene processed_pseudogene MGP_AJ_T0080074.1 MGP_AJ_G0031230.1 mouse_genomes_project 6 123194318 123198647 - Emg1 protein_coding retained_intron MGP_AJ_T0080075.1 MGP_AJ_G0031230.1 mouse_genomes_project 6 123194614 123202411 - MGP_AJ_P0080075 Emg1 protein_coding protein_coding MGP_AJ_T0080076.1 MGP_AJ_G0031230.1 mouse_genomes_project 6 123194615 123195893 - Emg1 protein_coding processed_transcript MGP_AJ_T0080077.1 MGP_AJ_G0031230.1 mouse_genomes_project 6 123194691 123202302 - Emg1 protein_coding retained_intron MGP_AJ_T0080078.1 MGP_AJ_G0031230.1 mouse_genomes_project 6 123195184 123202374 - Emg1 protein_coding retained_intron MGP_AJ_T0080079.1 MGP_AJ_G0031230.1 mouse_genomes_project 6 123195393 123202290 - MGP_AJ_P0080079 Emg1 protein_coding protein_coding MGP_AJ_T0002046.1 MGP_AJ_G0001959.1 mouse_genomes_project 6 84398681 84401845 + TEC TEC MGP_AJ_T0102712.1 MGP_AJ_G0040454.1 mouse_genomes_project 6 122495667 122496571 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0010786.1 MGP_AJ_G0008908.1 mouse_genomes_project 6 92715317 92715369 - Mir7041 miRNA miRNA MGP_AJ_T0015326.1 MGP_AJ_G0013421.1 mouse_genomes_project 6 44539447 44539826 - processed_pseudogene processed_pseudogene MGP_AJ_T0008598.1 MGP_AJ_G0006949.1 mouse_genomes_project 6 47592922 47632385 + C530044C16Rik lincRNA lincRNA MGP_AJ_T0008599.1 MGP_AJ_G0006949.1 mouse_genomes_project 6 47593131 47632524 + C530044C16Rik lincRNA lincRNA MGP_AJ_T0076635.1 MGP_AJ_G0030481.1 mouse_genomes_project 6 25045338 25048381 + MGP_AJ_P0076635 Arf5 protein_coding protein_coding MGP_AJ_T0008670.1 MGP_AJ_G0007006.1 mouse_genomes_project 6 85516642 85518082 + Gm44201 lincRNA lincRNA MGP_AJ_T0015565.1 MGP_AJ_G0013660.1 mouse_genomes_project 6 119271014 119272445 + processed_pseudogene processed_pseudogene MGP_AJ_T0079441.1 MGP_AJ_G0031102.1 mouse_genomes_project 6 111702657 111710345 + MGP_AJ_P0079441 Vhl protein_coding protein_coding MGP_AJ_T0079442.1 MGP_AJ_G0031102.1 mouse_genomes_project 6 111703419 111708473 + Vhl protein_coding processed_transcript MGP_AJ_T0079443.1 MGP_AJ_G0031102.1 mouse_genomes_project 6 111703627 111708269 + Vhl protein_coding processed_transcript MGP_AJ_T0079444.1 MGP_AJ_G0031102.1 mouse_genomes_project 6 111708218 111710339 + MGP_AJ_P0079444 Vhl protein_coding nonsense_mediated_decay MGP_AJ_T0015569.1 MGP_AJ_G0013664.1 mouse_genomes_project 6 119787155 119787905 + processed_pseudogene processed_pseudogene MGP_AJ_T0010745.1 MGP_AJ_G0008867.1 mouse_genomes_project 6 19447402 19447499 - Gm23961 miRNA miRNA MGP_AJ_T0076234.1 MGP_AJ_G0030400.1 mouse_genomes_project 6 1222854 1235102 + MGP_AJ_P0076234 Col1a2 protein_coding protein_coding MGP_AJ_T0076235.1 MGP_AJ_G0030400.1 mouse_genomes_project 6 1224156 1260221 + MGP_AJ_P0076235 Col1a2 protein_coding protein_coding MGP_AJ_T0076236.1 MGP_AJ_G0030400.1 mouse_genomes_project 6 1224365 1233698 + Col1a2 protein_coding retained_intron MGP_AJ_T0076237.1 MGP_AJ_G0030400.1 mouse_genomes_project 6 1224365 1233190 + Col1a2 protein_coding retained_intron MGP_AJ_T0076238.1 MGP_AJ_G0030400.1 mouse_genomes_project 6 1239308 1248135 + Col1a2 protein_coding retained_intron MGP_AJ_T0076239.1 MGP_AJ_G0030400.1 mouse_genomes_project 6 1248839 1254562 + Col1a2 protein_coding retained_intron MGP_AJ_T0076240.1 MGP_AJ_G0030400.1 mouse_genomes_project 6 1254457 1255300 + Col1a2 protein_coding retained_intron MGP_AJ_T0076241.1 MGP_AJ_G0030400.1 mouse_genomes_project 6 1256165 1256667 + Col1a2 protein_coding retained_intron MGP_AJ_T0015642.1 MGP_AJ_G0013737.1 mouse_genomes_project 6 131815525 131816174 + processed_pseudogene processed_pseudogene MGP_AJ_T0079713.1 MGP_AJ_G0031154.1 mouse_genomes_project 6 116497017 116535348 - MGP_AJ_P0079713 Bms1 protein_coding protein_coding MGP_AJ_T0079714.1 MGP_AJ_G0031154.1 mouse_genomes_project 6 116511411 116535278 - Bms1 protein_coding retained_intron MGP_AJ_T0079715.1 MGP_AJ_G0031154.1 mouse_genomes_project 6 116529707 116535286 - Bms1 protein_coding processed_transcript MGP_AJ_T0076607.1 MGP_AJ_G0030475.1 mouse_genomes_project 6 21577133 21582290 - MGP_AJ_P0076607 Tmem229a protein_coding protein_coding MGP_AJ_T0015544.1 MGP_AJ_G0013639.1 mouse_genomes_project 6 112145384 112145436 + processed_pseudogene processed_pseudogene MGP_AJ_T0015247.1 MGP_AJ_G0013342.1 mouse_genomes_project 6 7567547 7573721 + processed_pseudogene processed_pseudogene MGP_AJ_T0010764.1 MGP_AJ_G0008886.1 mouse_genomes_project 6 47373375 47373486 + Mir6371 miRNA miRNA MGP_AJ_T0015436.1 MGP_AJ_G0013531.1 mouse_genomes_project 6 69792299 69793401 - processed_pseudogene processed_pseudogene MGP_AJ_T0008687.1 MGP_AJ_G0007018.1 mouse_genomes_project 6 89482008 89493454 - 4930471M09Rik lincRNA lincRNA MGP_AJ_T0008688.1 MGP_AJ_G0007018.1 mouse_genomes_project 6 89491517 89493512 - 4930471M09Rik lincRNA lincRNA MGP_AJ_T0080639.1 MGP_AJ_G0031379.1 mouse_genomes_project 6 133227057 133269839 + MGP_AJ_P0080639 Bcl2l14 protein_coding protein_coding MGP_AJ_T0080640.1 MGP_AJ_G0031379.1 mouse_genomes_project 6 133227084 133234108 + Bcl2l14 protein_coding processed_transcript MGP_AJ_T0080641.1 MGP_AJ_G0031379.1 mouse_genomes_project 6 133229393 133269827 + MGP_AJ_P0080641 Bcl2l14 protein_coding protein_coding MGP_AJ_T0080642.1 MGP_AJ_G0031379.1 mouse_genomes_project 6 133229405 133254602 + MGP_AJ_P0080642 Bcl2l14 protein_coding protein_coding MGP_AJ_T0080643.1 MGP_AJ_G0031379.1 mouse_genomes_project 6 133245193 133269218 + MGP_AJ_P0080643 Bcl2l14 protein_coding protein_coding MGP_AJ_T0080644.1 MGP_AJ_G0031379.1 mouse_genomes_project 6 133245230 133259574 + Bcl2l14 protein_coding retained_intron MGP_AJ_T0008702.1 MGP_AJ_G0007029.1 mouse_genomes_project 6 99130217 99189733 + Gm43950 lincRNA lincRNA MGP_AJ_T0005065.1 MGP_AJ_G0004320.1 mouse_genomes_project 6 113538369 113551541 - Gm44079 antisense antisense MGP_AJ_T0002569.1 MGP_AJ_G0002469.1 mouse_genomes_project 6 38304744 38304793 + MGP_AJ_P0002569 Trbj2-3 TR_J_gene TR_J_gene MGP_AJ_T0005102.1 MGP_AJ_G0004353.1 mouse_genomes_project 6 134020573 134027121 + Gm19434 antisense antisense MGP_AJ_T0077575.1 MGP_AJ_G0030699.1 mouse_genomes_project 6 46988169 46992804 - Dfna5 protein_coding retained_intron MGP_AJ_T0077576.1 MGP_AJ_G0030699.1 mouse_genomes_project 6 46988646 47064058 - MGP_AJ_P0077576 Dfna5 protein_coding protein_coding MGP_AJ_T0077578.1 MGP_AJ_G0030699.1 mouse_genomes_project 6 47002103 47064050 - MGP_AJ_P0077578 Dfna5 protein_coding protein_coding MGP_AJ_T0077579.1 MGP_AJ_G0030699.1 mouse_genomes_project 6 47009501 47066165 - MGP_AJ_P0077579 Dfna5 protein_coding protein_coding MGP_AJ_T0077580.1 MGP_AJ_G0030699.1 mouse_genomes_project 6 47009503 47064072 - MGP_AJ_P0077580 Dfna5 protein_coding protein_coding MGP_AJ_T0077581.1 MGP_AJ_G0030699.1 mouse_genomes_project 6 47047841 47064329 - MGP_AJ_P0077581 Dfna5 protein_coding protein_coding MGP_AJ_T0077582.1 MGP_AJ_G0030699.1 mouse_genomes_project 6 47061683 47064278 - Dfna5 protein_coding retained_intron MGP_AJ_T0098851.1 MGP_AJ_G0036835.1 mouse_genomes_project 6 123605984 123606120 + Gm23751 scaRNA scaRNA MGP_AJ_T0011650.1 MGP_AJ_G0009772.1 mouse_genomes_project 6 49096995 49097054 + Gm27280 misc_RNA misc_RNA MGP_AJ_T0004954.1 MGP_AJ_G0004250.1 mouse_genomes_project 6 49018721 49025528 + Gm29430 antisense antisense MGP_AJ_T0004955.1 MGP_AJ_G0004250.1 mouse_genomes_project 6 49019336 49025455 + Gm29430 antisense antisense MGP_AJ_T0002735.1 MGP_AJ_G0002607.1 mouse_genomes_project 6 38019794 38020058 + TR_V_pseudogene TR_V_pseudogene MGP_AJ_T0004981.1 MGP_AJ_G0004271.1 mouse_genomes_project 6 79818464 79820575 - Gm15864 antisense antisense MGP_AJ_T0077330.1 MGP_AJ_G0030637.1 mouse_genomes_project 6 39564187 39568078 + MGP_AJ_P0077330 Olfr449 protein_coding protein_coding MGP_AJ_T0077331.1 MGP_AJ_G0030637.1 mouse_genomes_project 6 39564187 39568264 + MGP_AJ_P0077331 Olfr449 protein_coding protein_coding MGP_AJ_T0077332.1 MGP_AJ_G0030637.1 mouse_genomes_project 6 39564235 39567744 + MGP_AJ_P0077332 Olfr449 protein_coding protein_coding MGP_AJ_T0077333.1 MGP_AJ_G0030637.1 mouse_genomes_project 6 39567655 39568692 + MGP_AJ_P0077333 Olfr449 protein_coding protein_coding MGP_AJ_T0010802.1 MGP_AJ_G0008924.1 mouse_genomes_project 6 116544820 116544903 + Gm25953 miRNA miRNA MGP_AJ_T0002184.1 MGP_AJ_G0002096.1 mouse_genomes_project 6 147350241 147353753 - TEC TEC MGP_AJ_T0005069.1 MGP_AJ_G0004324.1 mouse_genomes_project 6 118663417 118664201 + Gm20692 antisense antisense MGP_AJ_T0076385.1 MGP_AJ_G0030430.1 mouse_genomes_project 6 9756071 9761407 + MGP_AJ_P0076385 Tmem106b protein_coding protein_coding MGP_AJ_T0076386.1 MGP_AJ_G0030430.1 mouse_genomes_project 6 9756128 9758266 + MGP_AJ_P0076386 Tmem106b protein_coding protein_coding MGP_AJ_T0076387.1 MGP_AJ_G0030430.1 mouse_genomes_project 6 9756151 9775570 + MGP_AJ_P0076387 Tmem106b protein_coding protein_coding MGP_AJ_T0076388.1 MGP_AJ_G0030430.1 mouse_genomes_project 6 9756163 9761698 + Tmem106b protein_coding retained_intron MGP_AJ_T0076389.1 MGP_AJ_G0030430.1 mouse_genomes_project 6 9756166 9762683 + Tmem106b protein_coding processed_transcript MGP_AJ_T0076390.1 MGP_AJ_G0030430.1 mouse_genomes_project 6 9756563 9767965 + MGP_AJ_P0076390 Tmem106b protein_coding protein_coding MGP_AJ_T0004948.1 MGP_AJ_G0004247.1 mouse_genomes_project 6 48992413 48994043 + Hotairm1 antisense antisense MGP_AJ_T0004949.1 MGP_AJ_G0004247.1 mouse_genomes_project 6 48993946 48997639 + Hotairm1 antisense antisense MGP_AJ_T0004950.1 MGP_AJ_G0004247.1 mouse_genomes_project 6 48994038 48997540 + Hotairm1 antisense antisense MGP_AJ_T0002187.1 MGP_AJ_G0002099.1 mouse_genomes_project 6 147891201 147892664 - TEC TEC MGP_AJ_T0080622.1 MGP_AJ_G0031369.1 mouse_genomes_project 6 131644970 131645935 + MGP_AJ_P0080622 Tas2r129 protein_coding protein_coding MGP_AJ_T0098710.1 MGP_AJ_G0036694.1 mouse_genomes_project 6 87241860 87241995 - Gm25961 rRNA rRNA MGP_AJ_T0015320.1 MGP_AJ_G0013415.1 mouse_genomes_project 6 41429912 41430057 - processed_pseudogene processed_pseudogene MGP_AJ_T0001960.1 MGP_AJ_G0001873.1 mouse_genomes_project 6 41886101 41888314 + TEC TEC MGP_AJ_T0015435.1 MGP_AJ_G0013530.1 mouse_genomes_project 6 69644970 69647173 - processed_pseudogene processed_pseudogene MGP_AJ_T0077441.1 MGP_AJ_G0030665.1 mouse_genomes_project 6 45238588 45293862 + MGP_AJ_P0077441 Sspo protein_coding protein_coding MGP_AJ_T0077442.1 MGP_AJ_G0030665.1 mouse_genomes_project 6 45238613 45293847 + MGP_AJ_P0077442 Sspo protein_coding protein_coding MGP_AJ_T0077443.1 MGP_AJ_G0030665.1 mouse_genomes_project 6 45273230 45280116 + Sspo protein_coding retained_intron MGP_AJ_T0077444.1 MGP_AJ_G0030665.1 mouse_genomes_project 6 45280684 45293862 + MGP_AJ_P0077444 Sspo protein_coding nonsense_mediated_decay MGP_AJ_T0077445.1 MGP_AJ_G0030665.1 mouse_genomes_project 6 45286391 45288818 + MGP_AJ_P0077445 Sspo protein_coding protein_coding MGP_AJ_T0005067.1 MGP_AJ_G0004322.1 mouse_genomes_project 6 114207953 114228994 + Gm20404 antisense antisense MGP_AJ_T0004915.1 MGP_AJ_G0004219.1 mouse_genomes_project 6 26149199 26151173 + Gm26627 antisense antisense MGP_AJ_T0015528.1 MGP_AJ_G0013623.1 mouse_genomes_project 6 107284288 107284873 + processed_pseudogene processed_pseudogene MGP_AJ_T0015392.1 MGP_AJ_G0013487.1 mouse_genomes_project 6 62499529 62501318 + processed_pseudogene processed_pseudogene MGP_AJ_T0077825.1 MGP_AJ_G0030757.1 mouse_genomes_project 6 53889552 53894053 + MGP_AJ_P0077825 Vmn1r8 protein_coding protein_coding MGP_AJ_T0077313.1 MGP_AJ_G0030630.1 mouse_genomes_project 6 39313961 39316989 - Tcaf3 protein_coding processed_transcript MGP_AJ_T0077314.1 MGP_AJ_G0030630.1 mouse_genomes_project 6 39316572 39326730 - MGP_AJ_P0077314 Tcaf3 protein_coding protein_coding MGP_AJ_T0077315.1 MGP_AJ_G0030630.1 mouse_genomes_project 6 39323503 39327050 - MGP_AJ_P0077315 Tcaf3 protein_coding protein_coding MGP_AJ_T0079106.1 MGP_AJ_G0031040.1 mouse_genomes_project 6 94917394 95145132 - MGP_AJ_P0079106 Fam19a4 protein_coding protein_coding MGP_AJ_T0079107.1 MGP_AJ_G0031040.1 mouse_genomes_project 6 95141344 95145112 - Fam19a4 protein_coding retained_intron MGP_AJ_T0079595.1 MGP_AJ_G0031130.1 mouse_genomes_project 6 114041419 114046705 + MGP_AJ_P0079595 H1foo protein_coding nonsense_mediated_decay MGP_AJ_T0079596.1 MGP_AJ_G0031130.1 mouse_genomes_project 6 114041419 114046710 + MGP_AJ_P0079596 H1foo protein_coding protein_coding MGP_AJ_T0079597.1 MGP_AJ_G0031130.1 mouse_genomes_project 6 114041419 114046705 + MGP_AJ_P0079597 H1foo protein_coding protein_coding MGP_AJ_T0079598.1 MGP_AJ_G0031130.1 mouse_genomes_project 6 114041434 114046395 + MGP_AJ_P0079598 H1foo protein_coding protein_coding MGP_AJ_T0079599.1 MGP_AJ_G0031130.1 mouse_genomes_project 6 114045230 114046699 + MGP_AJ_P0079599 H1foo protein_coding protein_coding MGP_AJ_T0000316.1 MGP_AJ_G0000260.1 mouse_genomes_project 6 68092767 68093039 + IG_V_pseudogene IG_V_pseudogene MGP_AJ_T0000205.1 MGP_AJ_G0000154.1 mouse_genomes_project 6 67951790 67952041 - MGP_AJ_P0000205 Igkv8-19 IG_V_gene IG_V_gene MGP_AJ_T0000206.1 MGP_AJ_G0000154.1 mouse_genomes_project 6 67951790 67952314 - MGP_AJ_P0000206 Igkv8-19 IG_V_gene IG_V_gene MGP_AJ_T0002150.1 MGP_AJ_G0002062.1 mouse_genomes_project 6 128097454 128100441 + TEC TEC MGP_AJ_T0079754.1 MGP_AJ_G0031160.1 mouse_genomes_project 6 117357040 117472148 + MGP_AJ_P0079754 Cacna2d4 protein_coding protein_coding MGP_AJ_T0079755.1 MGP_AJ_G0031160.1 mouse_genomes_project 6 117357041 117397021 + Cacna2d4 protein_coding retained_intron MGP_AJ_T0079756.1 MGP_AJ_G0031160.1 mouse_genomes_project 6 117357109 117470199 + MGP_AJ_P0079756 Cacna2d4 protein_coding protein_coding MGP_AJ_T0079757.1 MGP_AJ_G0031160.1 mouse_genomes_project 6 117368905 117421333 + Cacna2d4 protein_coding processed_transcript MGP_AJ_T0079758.1 MGP_AJ_G0031160.1 mouse_genomes_project 6 117370136 117391831 + Cacna2d4 protein_coding processed_transcript MGP_AJ_T0079759.1 MGP_AJ_G0031160.1 mouse_genomes_project 6 117387436 117391129 + Cacna2d4 protein_coding processed_transcript MGP_AJ_T0079760.1 MGP_AJ_G0031160.1 mouse_genomes_project 6 117387637 117391172 + Cacna2d4 protein_coding retained_intron MGP_AJ_T0079765.1 MGP_AJ_G0031160.1 mouse_genomes_project 6 117450696 117463779 + Cacna2d4 protein_coding processed_transcript MGP_AJ_T0079766.1 MGP_AJ_G0031160.1 mouse_genomes_project 6 117450729 117457846 + Cacna2d4 protein_coding retained_intron MGP_AJ_T0079767.1 MGP_AJ_G0031160.1 mouse_genomes_project 6 117452355 117466975 + Cacna2d4 protein_coding processed_transcript MGP_AJ_T0079768.1 MGP_AJ_G0031160.1 mouse_genomes_project 6 117456210 117469876 + MGP_AJ_P0079768 Cacna2d4 protein_coding unknown_likely_coding MGP_AJ_T0102718.1 MGP_AJ_G0040459.1 mouse_genomes_project 6 127609300 127610140 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0098712.1 MGP_AJ_G0036696.1 mouse_genomes_project 6 109672086 109672197 + Gm22093 rRNA rRNA MGP_AJ_T0008621.1 MGP_AJ_G0006965.1 mouse_genomes_project 6 52257556 52274972 + 6430584L05Rik lincRNA lincRNA MGP_AJ_T0076593.1 MGP_AJ_G0030469.1 mouse_genomes_project 6 21237293 21244941 + MGP_AJ_P0076593 Lmod2 protein_coding protein_coding MGP_AJ_T0015541.1 MGP_AJ_G0013636.1 mouse_genomes_project 6 111517603 111518012 - processed_pseudogene processed_pseudogene MGP_AJ_T0002174.1 MGP_AJ_G0002086.1 mouse_genomes_project 6 144178904 144182084 - TEC TEC MGP_AJ_T0076801.1 MGP_AJ_G0030508.1 mouse_genomes_project 6 27029559 27054724 - MGP_AJ_P0076801 Zc3hc1 protein_coding protein_coding MGP_AJ_T0076802.1 MGP_AJ_G0030508.1 mouse_genomes_project 6 27029563 27054703 - MGP_AJ_P0076802 Zc3hc1 protein_coding protein_coding MGP_AJ_T0076803.1 MGP_AJ_G0030508.1 mouse_genomes_project 6 27029567 27030398 - Zc3hc1 protein_coding retained_intron MGP_AJ_T0076804.1 MGP_AJ_G0030508.1 mouse_genomes_project 6 27029567 27054729 - MGP_AJ_P0076804 Zc3hc1 protein_coding protein_coding MGP_AJ_T0076805.1 MGP_AJ_G0030508.1 mouse_genomes_project 6 27029653 27054711 - MGP_AJ_P0076805 Zc3hc1 protein_coding protein_coding MGP_AJ_T0076806.1 MGP_AJ_G0030508.1 mouse_genomes_project 6 27033447 27036160 - Zc3hc1 protein_coding retained_intron MGP_AJ_T0076807.1 MGP_AJ_G0030508.1 mouse_genomes_project 6 27036101 27054707 - MGP_AJ_P0076807 Zc3hc1 protein_coding nonsense_mediated_decay MGP_AJ_T0076808.1 MGP_AJ_G0030508.1 mouse_genomes_project 6 27038002 27045844 - Zc3hc1 protein_coding processed_transcript MGP_AJ_T0076809.1 MGP_AJ_G0030508.1 mouse_genomes_project 6 27039182 27054690 - MGP_AJ_P0076809 Zc3hc1 protein_coding nonsense_mediated_decay MGP_AJ_T0076810.1 MGP_AJ_G0030508.1 mouse_genomes_project 6 27047967 27054711 - Zc3hc1 protein_coding retained_intron MGP_AJ_T0076811.1 MGP_AJ_G0030508.1 mouse_genomes_project 6 27050517 27054715 - Zc3hc1 protein_coding retained_intron MGP_AJ_T0079230.1 MGP_AJ_G0031063.1 mouse_genomes_project 6 104775962 104814632 - MGP_AJ_P0079230 Il5ra protein_coding protein_coding MGP_AJ_T0079231.1 MGP_AJ_G0031063.1 mouse_genomes_project 6 104776210 104814543 - MGP_AJ_P0079231 Il5ra protein_coding protein_coding MGP_AJ_T0079232.1 MGP_AJ_G0031063.1 mouse_genomes_project 6 104777578 104810700 - MGP_AJ_P0079232 Il5ra protein_coding protein_coding MGP_AJ_T0080574.1 MGP_AJ_G0031340.1 mouse_genomes_project 6 128849726 128864394 - MGP_AJ_P0080574 protein_coding protein_coding MGP_AJ_T0015459.1 MGP_AJ_G0013554.1 mouse_genomes_project 6 80779286 80780043 - processed_pseudogene processed_pseudogene MGP_AJ_T0008551.1 MGP_AJ_G0006918.1 mouse_genomes_project 6 28049045 28080889 - Mkln1os lincRNA lincRNA MGP_AJ_T0008553.1 MGP_AJ_G0006918.1 mouse_genomes_project 6 28065195 28080869 - Mkln1os lincRNA lincRNA MGP_AJ_T0008554.1 MGP_AJ_G0006918.1 mouse_genomes_project 6 28066842 28080875 - Mkln1os lincRNA lincRNA MGP_AJ_T0005091.1 MGP_AJ_G0004344.1 mouse_genomes_project 6 126924562 126942535 - Gm15862 antisense antisense MGP_AJ_T0079389.1 MGP_AJ_G0031091.1 mouse_genomes_project 6 111492510 111496491 - MGP_AJ_P0079389 Rpusd3 protein_coding protein_coding MGP_AJ_T0079390.1 MGP_AJ_G0031091.1 mouse_genomes_project 6 111492720 111493625 - Rpusd3 protein_coding retained_intron MGP_AJ_T0079391.1 MGP_AJ_G0031091.1 mouse_genomes_project 6 111493278 111496492 - MGP_AJ_P0079391 Rpusd3 protein_coding protein_coding MGP_AJ_T0079392.1 MGP_AJ_G0031091.1 mouse_genomes_project 6 111493482 111496483 - MGP_AJ_P0079392 Rpusd3 protein_coding protein_coding MGP_AJ_T0079393.1 MGP_AJ_G0031091.1 mouse_genomes_project 6 111493961 111496492 - Rpusd3 protein_coding retained_intron MGP_AJ_T0079394.1 MGP_AJ_G0031091.1 mouse_genomes_project 6 111494066 111496487 - MGP_AJ_P0079394 Rpusd3 protein_coding protein_coding MGP_AJ_T0079395.1 MGP_AJ_G0031091.1 mouse_genomes_project 6 111494368 111496221 - Rpusd3 protein_coding retained_intron MGP_AJ_T0079396.1 MGP_AJ_G0031091.1 mouse_genomes_project 6 111494395 111496504 - MGP_AJ_P0079396 Rpusd3 protein_coding protein_coding MGP_AJ_T0079397.1 MGP_AJ_G0031091.1 mouse_genomes_project 6 111495476 111496496 - Rpusd3 protein_coding retained_intron MGP_AJ_T0015595.1 MGP_AJ_G0013690.1 mouse_genomes_project 6 125508764 125509495 - processed_pseudogene processed_pseudogene MGP_AJ_T0080861.1 MGP_AJ_G0031423.1 mouse_genomes_project 6 139367262 139544090 + MGP_AJ_P0080861 Plekha5 protein_coding protein_coding MGP_AJ_T0080862.1 MGP_AJ_G0031423.1 mouse_genomes_project 6 139367368 139535273 + MGP_AJ_P0080862 Plekha5 protein_coding nonsense_mediated_decay MGP_AJ_T0080863.1 MGP_AJ_G0031423.1 mouse_genomes_project 6 139367369 139532437 + MGP_AJ_P0080863 Plekha5 protein_coding protein_coding MGP_AJ_T0080864.1 MGP_AJ_G0031423.1 mouse_genomes_project 6 139376318 139498493 + MGP_AJ_P0080864 Plekha5 protein_coding protein_coding MGP_AJ_T0080865.1 MGP_AJ_G0031423.1 mouse_genomes_project 6 139461501 139498494 + MGP_AJ_P0080865 Plekha5 protein_coding protein_coding MGP_AJ_T0080866.1 MGP_AJ_G0031423.1 mouse_genomes_project 6 139469942 139532437 + MGP_AJ_P0080866 Plekha5 protein_coding protein_coding MGP_AJ_T0080867.1 MGP_AJ_G0031423.1 mouse_genomes_project 6 139480469 139544090 + Plekha5 protein_coding processed_transcript MGP_AJ_T0080868.1 MGP_AJ_G0031423.1 mouse_genomes_project 6 139489457 139544090 + MGP_AJ_P0080868 Plekha5 protein_coding nonsense_mediated_decay MGP_AJ_T0080869.1 MGP_AJ_G0031423.1 mouse_genomes_project 6 139489483 139503422 + Plekha5 protein_coding processed_transcript MGP_AJ_T0080870.1 MGP_AJ_G0031423.1 mouse_genomes_project 6 139489487 139544090 + MGP_AJ_P0080870 Plekha5 protein_coding protein_coding MGP_AJ_T0080871.1 MGP_AJ_G0031423.1 mouse_genomes_project 6 139489622 139544090 + MGP_AJ_P0080871 Plekha5 protein_coding protein_coding MGP_AJ_T0080872.1 MGP_AJ_G0031423.1 mouse_genomes_project 6 139513991 139544096 + MGP_AJ_P0080872 Plekha5 protein_coding unknown_likely_coding MGP_AJ_T0080873.1 MGP_AJ_G0031423.1 mouse_genomes_project 6 139514823 139525561 + Plekha5 protein_coding retained_intron MGP_AJ_T0080874.1 MGP_AJ_G0031423.1 mouse_genomes_project 6 139522858 139525568 + Plekha5 protein_coding retained_intron MGP_AJ_T0080875.1 MGP_AJ_G0031423.1 mouse_genomes_project 6 139523046 139544090 + MGP_AJ_P0080875 Plekha5 protein_coding protein_coding MGP_AJ_T0080876.1 MGP_AJ_G0031423.1 mouse_genomes_project 6 139527645 139529782 + Plekha5 protein_coding retained_intron MGP_AJ_T0077958.1 MGP_AJ_G0030801.1 mouse_genomes_project 6 62851085 63012411 + MGP_AJ_P0077958 Prdm5 protein_coding protein_coding MGP_AJ_T0077959.1 MGP_AJ_G0030801.1 mouse_genomes_project 6 62851119 62905999 + Prdm5 protein_coding retained_intron MGP_AJ_T0077960.1 MGP_AJ_G0030801.1 mouse_genomes_project 6 62851119 63012408 + MGP_AJ_P0077960 Prdm5 protein_coding protein_coding MGP_AJ_T0077961.1 MGP_AJ_G0030801.1 mouse_genomes_project 6 62851122 63012333 + MGP_AJ_P0077961 Prdm5 protein_coding protein_coding MGP_AJ_T0077962.1 MGP_AJ_G0030801.1 mouse_genomes_project 6 62851191 62855359 + Prdm5 protein_coding retained_intron MGP_AJ_T0077963.1 MGP_AJ_G0030801.1 mouse_genomes_project 6 62851258 63012169 + MGP_AJ_P0077963 Prdm5 protein_coding protein_coding MGP_AJ_T0077964.1 MGP_AJ_G0030801.1 mouse_genomes_project 6 63011125 63013045 + Prdm5 protein_coding retained_intron MGP_AJ_T0100082.1 MGP_AJ_G0038048.1 mouse_genomes_project 6 31938976 31939132 + Gm23435 snRNA snRNA MGP_AJ_T0015391.1 MGP_AJ_G0013486.1 mouse_genomes_project 6 62485499 62487102 + processed_pseudogene processed_pseudogene MGP_AJ_T0000269.1 MGP_AJ_G0000213.1 mouse_genomes_project 6 64673102 64673399 + IG_V_pseudogene IG_V_pseudogene MGP_AJ_T0076351.1 MGP_AJ_G0030425.1 mouse_genomes_project 6 5370774 5490443 - MGP_AJ_P0076351 Ica1 protein_coding nonsense_mediated_decay MGP_AJ_T0076352.1 MGP_AJ_G0030425.1 mouse_genomes_project 6 5370774 5510193 - MGP_AJ_P0076352 Ica1 protein_coding protein_coding MGP_AJ_T0076353.1 MGP_AJ_G0030425.1 mouse_genomes_project 6 5370774 5510478 - MGP_AJ_P0076353 Ica1 protein_coding protein_coding MGP_AJ_T0076354.1 MGP_AJ_G0030425.1 mouse_genomes_project 6 5370774 5510523 - MGP_AJ_P0076354 Ica1 protein_coding protein_coding MGP_AJ_T0076355.1 MGP_AJ_G0030425.1 mouse_genomes_project 6 5370946 5386477 - Ica1 protein_coding processed_transcript MGP_AJ_T0076356.1 MGP_AJ_G0030425.1 mouse_genomes_project 6 5396866 5510193 - MGP_AJ_P0076356 Ica1 protein_coding protein_coding MGP_AJ_T0076357.1 MGP_AJ_G0030425.1 mouse_genomes_project 6 5397547 5412044 - MGP_AJ_P0076357 Ica1 protein_coding protein_coding MGP_AJ_T0076358.1 MGP_AJ_G0030425.1 mouse_genomes_project 6 5397557 5510526 - MGP_AJ_P0076358 Ica1 protein_coding protein_coding MGP_AJ_T0076359.1 MGP_AJ_G0030425.1 mouse_genomes_project 6 5397558 5469347 - MGP_AJ_P0076359 Ica1 protein_coding protein_coding MGP_AJ_T0076360.1 MGP_AJ_G0030425.1 mouse_genomes_project 6 5462693 5510527 - Ica1 protein_coding processed_transcript MGP_AJ_T0076361.1 MGP_AJ_G0030425.1 mouse_genomes_project 6 5481761 5502589 - MGP_AJ_P0076361 Ica1 protein_coding protein_coding MGP_AJ_T0076362.1 MGP_AJ_G0030425.1 mouse_genomes_project 6 5486676 5510162 - MGP_AJ_P0076362 Ica1 protein_coding protein_coding MGP_AJ_T0077138.1 MGP_AJ_G0030570.1 mouse_genomes_project 6 36125915 36148728 - MGP_AJ_P0077138 Mkrn1 protein_coding protein_coding MGP_AJ_T0077139.1 MGP_AJ_G0030570.1 mouse_genomes_project 6 36127253 36132848 - MGP_AJ_P0077139 Mkrn1 protein_coding protein_coding MGP_AJ_T0077140.1 MGP_AJ_G0030570.1 mouse_genomes_project 6 36128864 36148512 - MGP_AJ_P0077140 Mkrn1 protein_coding protein_coding MGP_AJ_T0077141.1 MGP_AJ_G0030570.1 mouse_genomes_project 6 36128870 36148803 - MGP_AJ_P0077141 Mkrn1 protein_coding protein_coding MGP_AJ_T0077142.1 MGP_AJ_G0030570.1 mouse_genomes_project 6 36129385 36133199 - Mkrn1 protein_coding retained_intron MGP_AJ_T0077143.1 MGP_AJ_G0030570.1 mouse_genomes_project 6 36132928 36148202 - MGP_AJ_P0077143 Mkrn1 protein_coding protein_coding MGP_AJ_T0077144.1 MGP_AJ_G0030570.1 mouse_genomes_project 6 36133656 36148743 - MGP_AJ_P0077144 Mkrn1 protein_coding protein_coding MGP_AJ_T0015248.1 MGP_AJ_G0013343.1 mouse_genomes_project 6 8801018 8801316 + processed_pseudogene processed_pseudogene MGP_AJ_T0001925.1 MGP_AJ_G0001838.1 mouse_genomes_project 6 14400414 14401793 - TEC TEC MGP_AJ_T0015327.1 MGP_AJ_G0013422.1 mouse_genomes_project 6 44601610 44602007 + processed_pseudogene processed_pseudogene MGP_AJ_T0080348.1 MGP_AJ_G0031276.1 mouse_genomes_project 6 125331813 125360076 - MGP_AJ_P0080348 Ndufa9 protein_coding protein_coding MGP_AJ_T0080349.1 MGP_AJ_G0031276.1 mouse_genomes_project 6 125332088 125360076 - MGP_AJ_P0080349 Ndufa9 protein_coding protein_coding MGP_AJ_T0080350.1 MGP_AJ_G0031276.1 mouse_genomes_project 6 125354692 125360087 - Ndufa9 protein_coding retained_intron MGP_AJ_T0079205.1 MGP_AJ_G0031059.1 mouse_genomes_project 6 100269070 100272617 - Cntn3 protein_coding retained_intron MGP_AJ_T0079206.1 MGP_AJ_G0031059.1 mouse_genomes_project 6 100269719 100678640 - MGP_AJ_P0079206 Cntn3 protein_coding protein_coding MGP_AJ_T0079207.1 MGP_AJ_G0031059.1 mouse_genomes_project 6 100269721 100571213 - MGP_AJ_P0079207 Cntn3 protein_coding protein_coding MGP_AJ_T0002181.1 MGP_AJ_G0002093.1 mouse_genomes_project 6 145855565 145856492 - TEC TEC MGP_AJ_T0076404.1 MGP_AJ_G0030434.1 mouse_genomes_project 6 10502370 10507841 - MGP_AJ_P0076404 Gpr85 protein_coding protein_coding MGP_AJ_T0076405.1 MGP_AJ_G0030434.1 mouse_genomes_project 6 10502980 10506360 - MGP_AJ_P0076405 Gpr85 protein_coding protein_coding MGP_AJ_T0076406.1 MGP_AJ_G0030434.1 mouse_genomes_project 6 10502989 10505154 - MGP_AJ_P0076406 Gpr85 protein_coding protein_coding MGP_AJ_T0076407.1 MGP_AJ_G0030434.1 mouse_genomes_project 6 10505986 10507394 - Gpr85 protein_coding processed_transcript MGP_AJ_T0015238.1 MGP_AJ_G0013333.1 mouse_genomes_project 6 4303213 4303574 + processed_pseudogene processed_pseudogene MGP_AJ_T0008512.1 MGP_AJ_G0006892.1 mouse_genomes_project 6 4075459 4083292 + Gm19272 lincRNA lincRNA MGP_AJ_T0008513.1 MGP_AJ_G0006892.1 mouse_genomes_project 6 4075459 4080305 + Gm19272 lincRNA lincRNA MGP_AJ_T0081051.1 MGP_AJ_G0031456.1 mouse_genomes_project 6 144667509 144673365 + MGP_AJ_P0081051 Tuba3b protein_coding protein_coding MGP_AJ_T0077762.1 MGP_AJ_G0030740.1 mouse_genomes_project 6 52067683 52181152 + MGP_AJ_P0077762 Fam188b protein_coding protein_coding MGP_AJ_T0077763.1 MGP_AJ_G0030740.1 mouse_genomes_project 6 52067683 52139083 + MGP_AJ_P0077763 Fam188b protein_coding protein_coding MGP_AJ_T0077764.1 MGP_AJ_G0030740.1 mouse_genomes_project 6 52138612 52179245 + Fam188b protein_coding processed_transcript MGP_AJ_T0079882.1 MGP_AJ_G0031180.1 mouse_genomes_project 6 119049200 119074307 - MGP_AJ_P0079882 Bid protein_coding nonsense_mediated_decay MGP_AJ_T0079883.1 MGP_AJ_G0031180.1 mouse_genomes_project 6 119050124 119074324 - MGP_AJ_P0079883 Bid protein_coding protein_coding MGP_AJ_T0079884.1 MGP_AJ_G0031180.1 mouse_genomes_project 6 119052886 119054837 - Bid protein_coding retained_intron MGP_AJ_T0079885.1 MGP_AJ_G0031180.1 mouse_genomes_project 6 119057491 119074269 - MGP_AJ_P0079885 Bid protein_coding protein_coding MGP_AJ_T0079886.1 MGP_AJ_G0031180.1 mouse_genomes_project 6 119064293 119074274 - Bid protein_coding processed_transcript MGP_AJ_T0015481.1 MGP_AJ_G0013576.1 mouse_genomes_project 6 89481145 89482034 - processed_pseudogene processed_pseudogene MGP_AJ_T0010765.1 MGP_AJ_G0008887.1 mouse_genomes_project 6 48085672 48085771 - Mir148a miRNA miRNA MGP_AJ_T0015654.1 MGP_AJ_G0013749.1 mouse_genomes_project 6 138955825 138956197 - processed_pseudogene processed_pseudogene MGP_AJ_T0008630.1 MGP_AJ_G0006973.1 mouse_genomes_project 6 58235967 58236655 - Gm43894 lincRNA lincRNA MGP_AJ_T0080506.1 MGP_AJ_G0031314.1 mouse_genomes_project 6 127893923 127903618 - MGP_AJ_P0080506 4922502D21Rik protein_coding protein_coding MGP_AJ_T0080507.1 MGP_AJ_G0031314.1 mouse_genomes_project 6 127894606 127898456 - MGP_AJ_P0080507 4922502D21Rik protein_coding protein_coding MGP_AJ_T0100112.1 MGP_AJ_G0038078.1 mouse_genomes_project 6 111102699 111102791 - Gm23244 snRNA snRNA MGP_AJ_T0101361.1 MGP_AJ_G0039327.1 mouse_genomes_project 6 82994413 82994529 + Gm22893 snoRNA snoRNA MGP_AJ_T0100098.1 MGP_AJ_G0038064.1 mouse_genomes_project 6 79404222 79404381 + Gm26264 snRNA snRNA MGP_AJ_T0011634.1 MGP_AJ_G0009756.1 mouse_genomes_project 6 27409757 27409987 + Gm27522 misc_RNA misc_RNA MGP_AJ_T0008799.1 MGP_AJ_G0007103.1 mouse_genomes_project 6 147688981 147699022 + Gm44115 lincRNA lincRNA MGP_AJ_T0076926.1 MGP_AJ_G0030529.1 mouse_genomes_project 6 30996091 31001111 - Akr1b3 protein_coding retained_intron MGP_AJ_T0076927.1 MGP_AJ_G0030529.1 mouse_genomes_project 6 30997591 31000341 - Akr1b3 protein_coding retained_intron MGP_AJ_T0076928.1 MGP_AJ_G0030529.1 mouse_genomes_project 6 30997591 31011132 - MGP_AJ_P0076928 Akr1b3 protein_coding protein_coding MGP_AJ_T0076929.1 MGP_AJ_G0030529.1 mouse_genomes_project 6 31001276 31011095 - Akr1b3 protein_coding retained_intron MGP_AJ_T0076930.1 MGP_AJ_G0030529.1 mouse_genomes_project 6 31003446 31011084 - Akr1b3 protein_coding retained_intron MGP_AJ_T0076931.1 MGP_AJ_G0030529.1 mouse_genomes_project 6 31004258 31011113 - MGP_AJ_P0076931 Akr1b3 protein_coding protein_coding MGP_AJ_T0078566.1 MGP_AJ_G0030928.1 mouse_genomes_project 6 83695366 83699120 - MGP_AJ_P0078566 Nat8f5 protein_coding protein_coding MGP_AJ_T0078358.1 MGP_AJ_G0030892.1 mouse_genomes_project 6 80927879 80941875 + MGP_AJ_P0078358 Rtkn protein_coding protein_coding MGP_AJ_T0078359.1 MGP_AJ_G0030892.1 mouse_genomes_project 6 80928228 80944878 + MGP_AJ_P0078359 Rtkn protein_coding protein_coding MGP_AJ_T0078360.1 MGP_AJ_G0030892.1 mouse_genomes_project 6 80929469 80944878 + MGP_AJ_P0078360 Rtkn protein_coding protein_coding MGP_AJ_T0078361.1 MGP_AJ_G0030892.1 mouse_genomes_project 6 80929490 80944878 + MGP_AJ_P0078361 Rtkn protein_coding protein_coding MGP_AJ_T0078362.1 MGP_AJ_G0030892.1 mouse_genomes_project 6 80934725 80940471 + MGP_AJ_P0078362 Rtkn protein_coding protein_coding MGP_AJ_T0078363.1 MGP_AJ_G0030892.1 mouse_genomes_project 6 80934897 80939993 + MGP_AJ_P0078363 Rtkn protein_coding protein_coding MGP_AJ_T0078364.1 MGP_AJ_G0030892.1 mouse_genomes_project 6 80940152 80942557 + Rtkn protein_coding retained_intron MGP_AJ_T0078366.1 MGP_AJ_G0030892.1 mouse_genomes_project 6 80943053 80944507 + Rtkn protein_coding retained_intron MGP_AJ_T0011643.1 MGP_AJ_G0009765.1 mouse_genomes_project 6 48997644 48997787 + Gm27477 misc_RNA misc_RNA MGP_AJ_T0008585.1 MGP_AJ_G0006938.1 mouse_genomes_project 6 37809612 37816836 + 5830405F06Rik lincRNA lincRNA MGP_AJ_T0008586.1 MGP_AJ_G0006938.1 mouse_genomes_project 6 37809613 37814878 + 5830405F06Rik lincRNA lincRNA MGP_AJ_T0004912.1 MGP_AJ_G0004217.1 mouse_genomes_project 6 24833305 24878611 + 6530409C15Rik antisense antisense MGP_AJ_T0004913.1 MGP_AJ_G0004217.1 mouse_genomes_project 6 24833326 24836653 + 6530409C15Rik antisense antisense MGP_AJ_T0010784.1 MGP_AJ_G0008906.1 mouse_genomes_project 6 86037374 86037505 - Mir6376 miRNA miRNA MGP_AJ_T0076275.1 MGP_AJ_G0030405.1 mouse_genomes_project 6 1917220 1943403 - MGP_AJ_P0076275 Pon1 protein_coding protein_coding MGP_AJ_T0076276.1 MGP_AJ_G0030405.1 mouse_genomes_project 6 1917625 1943241 - MGP_AJ_P0076276 Pon1 protein_coding protein_coding MGP_AJ_T0076277.1 MGP_AJ_G0030405.1 mouse_genomes_project 6 1920898 1943241 - MGP_AJ_P0076277 Pon1 protein_coding protein_coding MGP_AJ_T0076278.1 MGP_AJ_G0030405.1 mouse_genomes_project 6 1935010 1943220 - Pon1 protein_coding retained_intron MGP_AJ_T0008690.1 MGP_AJ_G0007020.1 mouse_genomes_project 6 89652430 89658713 + Gm45218 lincRNA lincRNA MGP_AJ_T0101341.1 MGP_AJ_G0039307.1 mouse_genomes_project 6 50724933 50725065 - Gm22910 snoRNA snoRNA MGP_AJ_T0011645.1 MGP_AJ_G0009767.1 mouse_genomes_project 6 49082217 49082404 + Gm27492 misc_RNA misc_RNA MGP_AJ_T0077827.1 MGP_AJ_G0030759.1 mouse_genomes_project 6 53926429 53937780 + MGP_AJ_P0077827 protein_coding protein_coding MGP_AJ_T0100114.1 MGP_AJ_G0038080.1 mouse_genomes_project 6 116950328 116950429 + Gm25905 snRNA snRNA MGP_AJ_T0001980.1 MGP_AJ_G0001893.1 mouse_genomes_project 6 44388332 44389917 + TEC TEC MGP_AJ_T0076461.1 MGP_AJ_G0030443.1 mouse_genomes_project 6 14114560 14223873 + MGP_AJ_P0076461 Met protein_coding protein_coding MGP_AJ_T0076462.1 MGP_AJ_G0030443.1 mouse_genomes_project 6 14114587 14142453 + MGP_AJ_P0076462 Met protein_coding protein_coding MGP_AJ_T0076463.1 MGP_AJ_G0030443.1 mouse_genomes_project 6 14114798 14222124 + MGP_AJ_P0076463 Met protein_coding protein_coding MGP_AJ_T0076464.1 MGP_AJ_G0030443.1 mouse_genomes_project 6 14114867 14191517 + Met protein_coding retained_intron MGP_AJ_T0076465.1 MGP_AJ_G0030443.1 mouse_genomes_project 6 14141946 14221700 + MGP_AJ_P0076465 Met protein_coding protein_coding MGP_AJ_T0076466.1 MGP_AJ_G0030443.1 mouse_genomes_project 6 14185789 14197309 + MGP_AJ_P0076466 Met protein_coding protein_coding MGP_AJ_T0076467.1 MGP_AJ_G0030443.1 mouse_genomes_project 6 14197071 14203466 + MGP_AJ_P0076467 Met protein_coding protein_coding MGP_AJ_T0002036.1 MGP_AJ_G0001949.1 mouse_genomes_project 6 79675212 79676728 - TEC TEC MGP_AJ_T0100080.1 MGP_AJ_G0038046.1 mouse_genomes_project 6 26622299 26622406 + Gm24536 snRNA snRNA MGP_AJ_T0000154.1 MGP_AJ_G0000118.1 mouse_genomes_project 6 65772813 65773315 + MGP_AJ_P0000154 Igkv20-101-2 IG_V_gene IG_V_gene MGP_AJ_T0015324.1 MGP_AJ_G0013419.1 mouse_genomes_project 6 43509626 43510074 - processed_pseudogene processed_pseudogene MGP_AJ_T0015229.1 MGP_AJ_G0013324.1 mouse_genomes_project 6 1107847 1108169 + processed_pseudogene processed_pseudogene MGP_AJ_T0078904.1 MGP_AJ_G0030990.1 mouse_genomes_project 6 87843994 87845091 - MGP_AJ_P0078904 protein_coding protein_coding MGP_AJ_T0005632.1 MGP_AJ_G0004741.1 mouse_genomes_project 6 113215707 113222947 - Gm17733 bidirectional_promoter_lncRNA bidirectional_promoter_lncRNA MGP_AJ_T0010740.1 MGP_AJ_G0008862.1 mouse_genomes_project 6 440400 440485 - Mir653 miRNA miRNA MGP_AJ_T0005042.1 MGP_AJ_G0004305.1 mouse_genomes_project 6 97813643 97820388 + Gm26748 antisense antisense MGP_AJ_T0015550.1 MGP_AJ_G0013645.1 mouse_genomes_project 6 113243807 113244642 - processed_pseudogene processed_pseudogene MGP_AJ_T0015586.1 MGP_AJ_G0013681.1 mouse_genomes_project 6 122647893 122648827 + processed_pseudogene processed_pseudogene MGP_AJ_T0081073.1 MGP_AJ_G0031461.1 mouse_genomes_project 6 145569612 145574636 - MGP_AJ_P0081073 Asun protein_coding protein_coding MGP_AJ_T0081074.1 MGP_AJ_G0031461.1 mouse_genomes_project 6 145569612 145577325 - MGP_AJ_P0081074 Asun protein_coding protein_coding MGP_AJ_T0081075.1 MGP_AJ_G0031461.1 mouse_genomes_project 6 145569612 145601835 - MGP_AJ_P0081075 Asun protein_coding protein_coding MGP_AJ_T0081076.1 MGP_AJ_G0031461.1 mouse_genomes_project 6 145569621 145571360 - Asun protein_coding retained_intron MGP_AJ_T0081077.1 MGP_AJ_G0031461.1 mouse_genomes_project 6 145569911 145570382 - Asun protein_coding retained_intron MGP_AJ_T0081078.1 MGP_AJ_G0031461.1 mouse_genomes_project 6 145570074 145574036 - Asun protein_coding retained_intron MGP_AJ_T0081079.1 MGP_AJ_G0031461.1 mouse_genomes_project 6 145572486 145576237 - Asun protein_coding processed_transcript MGP_AJ_T0081080.1 MGP_AJ_G0031461.1 mouse_genomes_project 6 145574082 145574809 - Asun protein_coding retained_intron MGP_AJ_T0081081.1 MGP_AJ_G0031461.1 mouse_genomes_project 6 145575000 145600261 - MGP_AJ_P0081081 Asun protein_coding protein_coding MGP_AJ_T0081082.1 MGP_AJ_G0031461.1 mouse_genomes_project 6 145582932 145586264 - Asun protein_coding retained_intron MGP_AJ_T0081083.1 MGP_AJ_G0031461.1 mouse_genomes_project 6 145597167 145601780 - Asun protein_coding retained_intron MGP_AJ_T0099072.1 MGP_AJ_G0037045.1 mouse_genomes_project 6 44797868 44798276 - sense_intronic sense_intronic MGP_AJ_T0102664.1 MGP_AJ_G0040406.1 mouse_genomes_project 6 31070217 31077174 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0000280.1 MGP_AJ_G0000224.1 mouse_genomes_project 6 65579862 65580582 + IG_V_pseudogene IG_V_pseudogene MGP_AJ_T0015594.1 MGP_AJ_G0013689.1 mouse_genomes_project 6 125441048 125441948 + processed_pseudogene processed_pseudogene MGP_AJ_T0015347.1 MGP_AJ_G0013442.1 mouse_genomes_project 6 47787986 47788224 + processed_pseudogene processed_pseudogene MGP_AJ_T0080344.1 MGP_AJ_G0031275.1 mouse_genomes_project 6 125214078 125246729 - MGP_AJ_P0080344 Kcna6 protein_coding nonsense_mediated_decay MGP_AJ_T0080345.1 MGP_AJ_G0031275.1 mouse_genomes_project 6 125214080 125242878 - Kcna6 protein_coding processed_transcript MGP_AJ_T0080346.1 MGP_AJ_G0031275.1 mouse_genomes_project 6 125214081 125246741 - MGP_AJ_P0080346 Kcna6 protein_coding protein_coding MGP_AJ_T0080347.1 MGP_AJ_G0031275.1 mouse_genomes_project 6 125242754 125246218 - MGP_AJ_P0080347 Kcna6 protein_coding protein_coding MGP_AJ_T0002670.1 MGP_AJ_G0002552.1 mouse_genomes_project 6 37867984 37868502 + MGP_AJ_P0002670 Trbv12-1 TR_V_gene TR_V_gene MGP_AJ_T0080190.1 MGP_AJ_G0031249.1 mouse_genomes_project 6 123446213 123453346 - MGP_AJ_P0080190 Cops7a protein_coding protein_coding MGP_AJ_T0080191.1 MGP_AJ_G0031249.1 mouse_genomes_project 6 123446616 123453256 - MGP_AJ_P0080191 Cops7a protein_coding protein_coding MGP_AJ_T0080192.1 MGP_AJ_G0031249.1 mouse_genomes_project 6 123447034 123447942 - Cops7a protein_coding retained_intron MGP_AJ_T0080193.1 MGP_AJ_G0031249.1 mouse_genomes_project 6 123447707 123453098 - MGP_AJ_P0080193 Cops7a protein_coding protein_coding MGP_AJ_T0080194.1 MGP_AJ_G0031249.1 mouse_genomes_project 6 123448958 123453216 - MGP_AJ_P0080194 Cops7a protein_coding protein_coding MGP_AJ_T0080195.1 MGP_AJ_G0031249.1 mouse_genomes_project 6 123450423 123453015 - MGP_AJ_P0080195 Cops7a protein_coding protein_coding MGP_AJ_T0080196.1 MGP_AJ_G0031249.1 mouse_genomes_project 6 123452361 123453320 - Cops7a protein_coding retained_intron MGP_AJ_T0079350.1 MGP_AJ_G0031085.1 mouse_genomes_project 6 111379114 111397545 + MGP_AJ_P0079350 Brpf1 protein_coding protein_coding MGP_AJ_T0079351.1 MGP_AJ_G0031085.1 mouse_genomes_project 6 111379143 111397390 + MGP_AJ_P0079351 Brpf1 protein_coding protein_coding MGP_AJ_T0079352.1 MGP_AJ_G0031085.1 mouse_genomes_project 6 111379169 111397548 + MGP_AJ_P0079352 Brpf1 protein_coding protein_coding MGP_AJ_T0079353.1 MGP_AJ_G0031085.1 mouse_genomes_project 6 111379169 111397409 + MGP_AJ_P0079353 Brpf1 protein_coding protein_coding MGP_AJ_T0079354.1 MGP_AJ_G0031085.1 mouse_genomes_project 6 111379201 111397529 + MGP_AJ_P0079354 Brpf1 protein_coding protein_coding MGP_AJ_T0079355.1 MGP_AJ_G0031085.1 mouse_genomes_project 6 111379290 111397311 + MGP_AJ_P0079355 Brpf1 protein_coding protein_coding MGP_AJ_T0079356.1 MGP_AJ_G0031085.1 mouse_genomes_project 6 111379406 111397412 + MGP_AJ_P0079356 Brpf1 protein_coding protein_coding MGP_AJ_T0079357.1 MGP_AJ_G0031085.1 mouse_genomes_project 6 111389111 111390407 + Brpf1 protein_coding retained_intron MGP_AJ_T0079358.1 MGP_AJ_G0031085.1 mouse_genomes_project 6 111392353 111394994 + Brpf1 protein_coding retained_intron MGP_AJ_T0079359.1 MGP_AJ_G0031085.1 mouse_genomes_project 6 111392511 111397390 + Brpf1 protein_coding retained_intron MGP_AJ_T0000165.1 MGP_AJ_G0000125.1 mouse_genomes_project 6 66042034 66042502 - MGP_AJ_P0000165 Igkv19-93 IG_V_gene IG_V_gene MGP_AJ_T0000166.1 MGP_AJ_G0000125.1 mouse_genomes_project 6 66042034 66042518 - MGP_AJ_P0000166 Igkv19-93 IG_V_gene IG_V_gene MGP_AJ_T0079974.1 MGP_AJ_G0031198.1 mouse_genomes_project 6 120917428 120942711 - MGP_AJ_P0079974 Apobec1 protein_coding protein_coding MGP_AJ_T0079975.1 MGP_AJ_G0031198.1 mouse_genomes_project 6 120917435 120940392 - MGP_AJ_P0079975 Apobec1 protein_coding protein_coding MGP_AJ_T0079976.1 MGP_AJ_G0031198.1 mouse_genomes_project 6 120917437 120942638 - MGP_AJ_P0079976 Apobec1 protein_coding protein_coding MGP_AJ_T0079977.1 MGP_AJ_G0031198.1 mouse_genomes_project 6 120922129 120942654 - MGP_AJ_P0079977 Apobec1 protein_coding protein_coding MGP_AJ_T0079978.1 MGP_AJ_G0031198.1 mouse_genomes_project 6 120922155 120940623 - MGP_AJ_P0079978 Apobec1 protein_coding protein_coding MGP_AJ_T0079979.1 MGP_AJ_G0031198.1 mouse_genomes_project 6 120922337 120942596 - MGP_AJ_P0079979 Apobec1 protein_coding protein_coding MGP_AJ_T0079980.1 MGP_AJ_G0031198.1 mouse_genomes_project 6 120927586 120942637 - MGP_AJ_P0079980 Apobec1 protein_coding protein_coding MGP_AJ_T0079981.1 MGP_AJ_G0031198.1 mouse_genomes_project 6 120928319 120942631 - Apobec1 protein_coding retained_intron MGP_AJ_T0079982.1 MGP_AJ_G0031198.1 mouse_genomes_project 6 120936887 120940703 - Apobec1 protein_coding retained_intron MGP_AJ_T0002680.1 MGP_AJ_G0002561.1 mouse_genomes_project 6 37933112 37933786 + MGP_AJ_P0002680 Trbv19 TR_V_gene TR_V_gene MGP_AJ_T0078625.1 MGP_AJ_G0030941.1 mouse_genomes_project 6 84303541 84331699 + MGP_AJ_P0078625 Tia1 protein_coding protein_coding MGP_AJ_T0078626.1 MGP_AJ_G0030941.1 mouse_genomes_project 6 84303541 84333903 + MGP_AJ_P0078626 Tia1 protein_coding protein_coding MGP_AJ_T0078627.1 MGP_AJ_G0030941.1 mouse_genomes_project 6 84303557 84304491 + Tia1 protein_coding retained_intron MGP_AJ_T0078628.1 MGP_AJ_G0030941.1 mouse_genomes_project 6 84303604 84306440 + Tia1 protein_coding processed_transcript MGP_AJ_T0078629.1 MGP_AJ_G0030941.1 mouse_genomes_project 6 84303613 84317857 + Tia1 protein_coding retained_intron MGP_AJ_T0078630.1 MGP_AJ_G0030941.1 mouse_genomes_project 6 84303618 84319664 + Tia1 protein_coding processed_transcript MGP_AJ_T0078631.1 MGP_AJ_G0030941.1 mouse_genomes_project 6 84303618 84328274 + MGP_AJ_P0078631 Tia1 protein_coding nonsense_mediated_decay MGP_AJ_T0078632.1 MGP_AJ_G0030941.1 mouse_genomes_project 6 84303626 84331270 + Tia1 protein_coding retained_intron MGP_AJ_T0078633.1 MGP_AJ_G0030941.1 mouse_genomes_project 6 84303635 84332683 + MGP_AJ_P0078633 Tia1 protein_coding protein_coding MGP_AJ_T0078634.1 MGP_AJ_G0030941.1 mouse_genomes_project 6 84303636 84331269 + MGP_AJ_P0078634 Tia1 protein_coding protein_coding MGP_AJ_T0078635.1 MGP_AJ_G0030941.1 mouse_genomes_project 6 84303639 84328329 + MGP_AJ_P0078635 Tia1 protein_coding nonsense_mediated_decay MGP_AJ_T0078636.1 MGP_AJ_G0030941.1 mouse_genomes_project 6 84303645 84324383 + Tia1 protein_coding processed_transcript MGP_AJ_T0078637.1 MGP_AJ_G0030941.1 mouse_genomes_project 6 84303647 84333725 + MGP_AJ_P0078637 Tia1 protein_coding nonsense_mediated_decay MGP_AJ_T0078638.1 MGP_AJ_G0030941.1 mouse_genomes_project 6 84303658 84319710 + Tia1 protein_coding retained_intron MGP_AJ_T0078639.1 MGP_AJ_G0030941.1 mouse_genomes_project 6 84303658 84332678 + MGP_AJ_P0078639 Tia1 protein_coding protein_coding MGP_AJ_T0078640.1 MGP_AJ_G0030941.1 mouse_genomes_project 6 84303682 84319745 + Tia1 protein_coding retained_intron MGP_AJ_T0078641.1 MGP_AJ_G0030941.1 mouse_genomes_project 6 84303795 84325806 + Tia1 protein_coding retained_intron MGP_AJ_T0078642.1 MGP_AJ_G0030941.1 mouse_genomes_project 6 84313692 84321850 + Tia1 protein_coding retained_intron MGP_AJ_T0078643.1 MGP_AJ_G0030941.1 mouse_genomes_project 6 84315656 84318320 + Tia1 protein_coding retained_intron MGP_AJ_T0078644.1 MGP_AJ_G0030941.1 mouse_genomes_project 6 84319074 84324135 + Tia1 protein_coding processed_transcript MGP_AJ_T0078645.1 MGP_AJ_G0030941.1 mouse_genomes_project 6 84319266 84326030 + Tia1 protein_coding processed_transcript MGP_AJ_T0078646.1 MGP_AJ_G0030941.1 mouse_genomes_project 6 84319766 84324369 + Tia1 protein_coding retained_intron MGP_AJ_T0078647.1 MGP_AJ_G0030941.1 mouse_genomes_project 6 84319798 84324943 + Tia1 protein_coding retained_intron MGP_AJ_T0078648.1 MGP_AJ_G0030941.1 mouse_genomes_project 6 84320124 84328291 + Tia1 protein_coding retained_intron MGP_AJ_T0078649.1 MGP_AJ_G0030941.1 mouse_genomes_project 6 84322649 84325154 + Tia1 protein_coding retained_intron MGP_AJ_T0078650.1 MGP_AJ_G0030941.1 mouse_genomes_project 6 84324348 84325514 + Tia1 protein_coding retained_intron MGP_AJ_T0078651.1 MGP_AJ_G0030941.1 mouse_genomes_project 6 84325520 84326220 + Tia1 protein_coding retained_intron MGP_AJ_T0078652.1 MGP_AJ_G0030941.1 mouse_genomes_project 6 84325995 84330801 + MGP_AJ_P0078652 Tia1 protein_coding nonsense_mediated_decay MGP_AJ_T0077158.1 MGP_AJ_G0030574.1 mouse_genomes_project 6 36324094 36335681 + MGP_AJ_P0077158 Ndufb2 protein_coding protein_coding MGP_AJ_T0077159.1 MGP_AJ_G0030574.1 mouse_genomes_project 6 36324103 36331770 + MGP_AJ_P0077159 Ndufb2 protein_coding protein_coding MGP_AJ_T0077160.1 MGP_AJ_G0030574.1 mouse_genomes_project 6 36324105 36331721 + Ndufb2 protein_coding processed_transcript MGP_AJ_T0077161.1 MGP_AJ_G0030574.1 mouse_genomes_project 6 36324108 36329046 + Ndufb2 protein_coding retained_intron MGP_AJ_T0077162.1 MGP_AJ_G0030574.1 mouse_genomes_project 6 36329562 36331591 + Ndufb2 protein_coding retained_intron MGP_AJ_T0077163.1 MGP_AJ_G0030574.1 mouse_genomes_project 6 36334082 36335609 + Ndufb2 protein_coding processed_transcript MGP_AJ_T0015659.1 MGP_AJ_G0013754.1 mouse_genomes_project 6 139363379 139363864 + processed_pseudogene processed_pseudogene MGP_AJ_T0002090.1 MGP_AJ_G0002003.1 mouse_genomes_project 6 91327635 91330123 + TEC TEC MGP_AJ_T0081062.1 MGP_AJ_G0031460.1 mouse_genomes_project 6 145111571 145517577 - MGP_AJ_P0081062 Itpr2 protein_coding protein_coding MGP_AJ_T0081063.1 MGP_AJ_G0031460.1 mouse_genomes_project 6 145114752 145517311 - MGP_AJ_P0081063 Itpr2 protein_coding protein_coding MGP_AJ_T0081064.1 MGP_AJ_G0031460.1 mouse_genomes_project 6 145123983 145150662 - Itpr2 protein_coding processed_transcript MGP_AJ_T0081065.1 MGP_AJ_G0031460.1 mouse_genomes_project 6 145183772 145233494 - MGP_AJ_P0081065 Itpr2 protein_coding protein_coding MGP_AJ_T0081066.1 MGP_AJ_G0031460.1 mouse_genomes_project 6 145183847 145200467 - Itpr2 protein_coding processed_transcript MGP_AJ_T0081067.1 MGP_AJ_G0031460.1 mouse_genomes_project 6 145238359 145239863 - Itpr2 protein_coding retained_intron MGP_AJ_T0081068.1 MGP_AJ_G0031460.1 mouse_genomes_project 6 145296916 145300715 - Itpr2 protein_coding retained_intron MGP_AJ_T0081069.1 MGP_AJ_G0031460.1 mouse_genomes_project 6 145366120 145405469 - MGP_AJ_P0081069 Itpr2 protein_coding protein_coding MGP_AJ_T0081070.1 MGP_AJ_G0031460.1 mouse_genomes_project 6 145381493 145517622 - MGP_AJ_P0081070 Itpr2 protein_coding nonsense_mediated_decay MGP_AJ_T0081071.1 MGP_AJ_G0031460.1 mouse_genomes_project 6 145389267 145517577 - Itpr2 protein_coding retained_intron MGP_AJ_T0081072.1 MGP_AJ_G0031460.1 mouse_genomes_project 6 145431385 145517277 - Itpr2 protein_coding processed_transcript MGP_AJ_T0004909.1 MGP_AJ_G0004214.1 mouse_genomes_project 6 14916033 14934970 - Gm15592 antisense antisense MGP_AJ_T0077327.1 MGP_AJ_G0030634.1 mouse_genomes_project 6 39495906 39496777 + MGP_AJ_P0077327 protein_coding protein_coding MGP_AJ_T0015260.1 MGP_AJ_G0013355.1 mouse_genomes_project 6 13576799 13578495 + processed_pseudogene processed_pseudogene MGP_AJ_T0078732.1 MGP_AJ_G0030961.1 mouse_genomes_project 6 85547546 85592632 - MGP_AJ_P0078732 Aplf protein_coding protein_coding MGP_AJ_T0078733.1 MGP_AJ_G0030961.1 mouse_genomes_project 6 85549363 85592549 - MGP_AJ_P0078733 Aplf protein_coding nonsense_mediated_decay MGP_AJ_T0078734.1 MGP_AJ_G0030961.1 mouse_genomes_project 6 85549368 85592678 - MGP_AJ_P0078734 Aplf protein_coding protein_coding MGP_AJ_T0078735.1 MGP_AJ_G0030961.1 mouse_genomes_project 6 85570743 85592614 - Aplf protein_coding retained_intron MGP_AJ_T0008712.1 MGP_AJ_G0007037.1 mouse_genomes_project 6 110280988 110282807 + 1700054K19Rik lincRNA lincRNA MGP_AJ_T0002726.1 MGP_AJ_G0002598.1 mouse_genomes_project 6 37841840 37842130 + TR_V_pseudogene TR_V_pseudogene MGP_AJ_T0077237.1 MGP_AJ_G0030604.1 mouse_genomes_project 6 38389682 38405661 - MGP_AJ_P0077237 Trpv6 protein_coding protein_coding MGP_AJ_T0077238.1 MGP_AJ_G0030604.1 mouse_genomes_project 6 38389685 38405661 - MGP_AJ_P0077238 Trpv6 protein_coding protein_coding MGP_AJ_T0077239.1 MGP_AJ_G0030604.1 mouse_genomes_project 6 38392553 38405636 - Trpv6 protein_coding retained_intron MGP_AJ_T0008519.1 MGP_AJ_G0006896.1 mouse_genomes_project 6 9301452 9343831 + lincRNA lincRNA MGP_AJ_T0100120.1 MGP_AJ_G0038086.1 mouse_genomes_project 6 123452081 123452184 + Gm23851 snRNA snRNA MGP_AJ_T0005033.1 MGP_AJ_G0004301.1 mouse_genomes_project 6 90073326 90077050 - 4930466I24Rik antisense antisense MGP_AJ_T0079942.1 MGP_AJ_G0031194.1 mouse_genomes_project 6 120651974 120672307 - MGP_AJ_P0079942 Phc1 protein_coding protein_coding MGP_AJ_T0079943.1 MGP_AJ_G0031194.1 mouse_genomes_project 6 120651974 120672307 - MGP_AJ_P0079943 Phc1 protein_coding protein_coding MGP_AJ_T0079944.1 MGP_AJ_G0031194.1 mouse_genomes_project 6 120651981 120674944 - MGP_AJ_P0079944 Phc1 protein_coding protein_coding MGP_AJ_T0079945.1 MGP_AJ_G0031194.1 mouse_genomes_project 6 120651993 120674944 - MGP_AJ_P0079945 Phc1 protein_coding protein_coding MGP_AJ_T0079946.1 MGP_AJ_G0031194.1 mouse_genomes_project 6 120651993 120674158 - MGP_AJ_P0079946 Phc1 protein_coding protein_coding MGP_AJ_T0079947.1 MGP_AJ_G0031194.1 mouse_genomes_project 6 120652093 120674940 - MGP_AJ_P0079947 Phc1 protein_coding protein_coding MGP_AJ_T0079948.1 MGP_AJ_G0031194.1 mouse_genomes_project 6 120652546 120674907 - Phc1 protein_coding retained_intron MGP_AJ_T0079949.1 MGP_AJ_G0031194.1 mouse_genomes_project 6 120652546 120674907 - MGP_AJ_P0079949 Phc1 protein_coding nonsense_mediated_decay MGP_AJ_T0079950.1 MGP_AJ_G0031194.1 mouse_genomes_project 6 120652547 120675753 - MGP_AJ_P0079950 Phc1 protein_coding protein_coding MGP_AJ_T0079951.1 MGP_AJ_G0031194.1 mouse_genomes_project 6 120659795 120672211 - MGP_AJ_P0079951 Phc1 protein_coding nonsense_mediated_decay MGP_AJ_T0079952.1 MGP_AJ_G0031194.1 mouse_genomes_project 6 120660187 120675698 - MGP_AJ_P0079952 Phc1 protein_coding protein_coding MGP_AJ_T0079953.1 MGP_AJ_G0031194.1 mouse_genomes_project 6 120667962 120670436 - Phc1 protein_coding retained_intron MGP_AJ_T0079954.1 MGP_AJ_G0031194.1 mouse_genomes_project 6 120668685 120675416 - MGP_AJ_P0079954 Phc1 protein_coding protein_coding MGP_AJ_T0079955.1 MGP_AJ_G0031194.1 mouse_genomes_project 6 120669424 120674944 - MGP_AJ_P0079955 Phc1 protein_coding protein_coding MGP_AJ_T0079956.1 MGP_AJ_G0031194.1 mouse_genomes_project 6 120669425 120672588 - MGP_AJ_P0079956 Phc1 protein_coding protein_coding MGP_AJ_T0079957.1 MGP_AJ_G0031194.1 mouse_genomes_project 6 120669429 120674922 - MGP_AJ_P0079957 Phc1 protein_coding protein_coding MGP_AJ_T0002178.1 MGP_AJ_G0002090.1 mouse_genomes_project 6 144996057 144998928 + TEC TEC MGP_AJ_T0002125.1 MGP_AJ_G0002038.1 mouse_genomes_project 6 114362900 114366562 - TEC TEC MGP_AJ_T0011675.1 MGP_AJ_G0009797.1 mouse_genomes_project 6 141243480 141243769 - Gm25430 misc_RNA misc_RNA MGP_AJ_T0002135.1 MGP_AJ_G0002047.1 mouse_genomes_project 6 121161105 121163473 + TEC TEC MGP_AJ_T0005022.1 MGP_AJ_G0004292.1 mouse_genomes_project 6 86156701 86159778 - 1700031F10Rik antisense antisense MGP_AJ_T0005023.1 MGP_AJ_G0004292.1 mouse_genomes_project 6 86156703 86157739 - 1700031F10Rik antisense antisense MGP_AJ_T0080668.1 MGP_AJ_G0031385.1 mouse_genomes_project 6 133704409 133733428 - MGP_AJ_P0080668 Gpr19 protein_coding protein_coding MGP_AJ_T0080669.1 MGP_AJ_G0031385.1 mouse_genomes_project 6 133704409 133733318 - MGP_AJ_P0080669 Gpr19 protein_coding protein_coding MGP_AJ_T0080670.1 MGP_AJ_G0031385.1 mouse_genomes_project 6 133704424 133733361 - MGP_AJ_P0080670 Gpr19 protein_coding protein_coding MGP_AJ_T0080671.1 MGP_AJ_G0031385.1 mouse_genomes_project 6 133704473 133723223 - MGP_AJ_P0080671 Gpr19 protein_coding protein_coding MGP_AJ_T0080672.1 MGP_AJ_G0031385.1 mouse_genomes_project 6 133704478 133733366 - MGP_AJ_P0080672 Gpr19 protein_coding protein_coding MGP_AJ_T0080673.1 MGP_AJ_G0031385.1 mouse_genomes_project 6 133705353 133733328 - MGP_AJ_P0080673 Gpr19 protein_coding protein_coding MGP_AJ_T0080674.1 MGP_AJ_G0031385.1 mouse_genomes_project 6 133705524 133733318 - MGP_AJ_P0080674 Gpr19 protein_coding protein_coding MGP_AJ_T0080675.1 MGP_AJ_G0031385.1 mouse_genomes_project 6 133705565 133723159 - MGP_AJ_P0080675 Gpr19 protein_coding protein_coding MGP_AJ_T0080676.1 MGP_AJ_G0031385.1 mouse_genomes_project 6 133712559 133733390 - Gpr19 protein_coding processed_transcript MGP_AJ_T0080677.1 MGP_AJ_G0031385.1 mouse_genomes_project 6 133722281 133732590 - Gpr19 protein_coding processed_transcript MGP_AJ_T0080678.1 MGP_AJ_G0031385.1 mouse_genomes_project 6 133723041 133734076 - Gpr19 protein_coding processed_transcript MGP_AJ_T0080679.1 MGP_AJ_G0031385.1 mouse_genomes_project 6 133732203 133733428 - Gpr19 protein_coding processed_transcript MGP_AJ_T0080887.1 MGP_AJ_G0031426.1 mouse_genomes_project 6 140220224 140478538 + MGP_AJ_P0080887 Pde3a protein_coding protein_coding MGP_AJ_T0080888.1 MGP_AJ_G0031426.1 mouse_genomes_project 6 140220921 140442905 + Pde3a protein_coding retained_intron MGP_AJ_T0079887.1 MGP_AJ_G0031181.1 mouse_genomes_project 6 119089245 119157024 - Mical3 protein_coding processed_transcript MGP_AJ_T0079888.1 MGP_AJ_G0031181.1 mouse_genomes_project 6 119092318 119116170 - Mical3 protein_coding processed_transcript MGP_AJ_T0079889.1 MGP_AJ_G0031181.1 mouse_genomes_project 6 119092362 119093072 - Mical3 protein_coding retained_intron MGP_AJ_T0079890.1 MGP_AJ_G0031181.1 mouse_genomes_project 6 119108226 119115258 - Mical3 protein_coding processed_transcript MGP_AJ_T0079891.1 MGP_AJ_G0031181.1 mouse_genomes_project 6 119115877 119157024 - Mical3 protein_coding processed_transcript MGP_AJ_T0079892.1 MGP_AJ_G0031181.1 mouse_genomes_project 6 119117546 119123676 - Mical3 protein_coding processed_transcript MGP_AJ_T0079893.1 MGP_AJ_G0031181.1 mouse_genomes_project 6 119151221 119176053 - MGP_AJ_P0079893 Mical3 protein_coding protein_coding MGP_AJ_T0079894.1 MGP_AJ_G0031181.1 mouse_genomes_project 6 119161112 119234685 - MGP_AJ_P0079894 Mical3 protein_coding nonsense_mediated_decay MGP_AJ_T0079895.1 MGP_AJ_G0031181.1 mouse_genomes_project 6 119161112 119234687 - MGP_AJ_P0079895 Mical3 protein_coding protein_coding MGP_AJ_T0079896.1 MGP_AJ_G0031181.1 mouse_genomes_project 6 119161113 119176068 - MGP_AJ_P0079896 Mical3 protein_coding protein_coding MGP_AJ_T0079897.1 MGP_AJ_G0031181.1 mouse_genomes_project 6 119170436 119263752 - Mical3 protein_coding retained_intron MGP_AJ_T0079898.1 MGP_AJ_G0031181.1 mouse_genomes_project 6 119170436 119176090 - Mical3 protein_coding processed_transcript MGP_AJ_T0079899.1 MGP_AJ_G0031181.1 mouse_genomes_project 6 119176011 119285190 - MGP_AJ_P0079899 Mical3 protein_coding protein_coding MGP_AJ_T0079900.1 MGP_AJ_G0031181.1 mouse_genomes_project 6 119176190 119179564 - Mical3 protein_coding retained_intron MGP_AJ_T0079901.1 MGP_AJ_G0031181.1 mouse_genomes_project 6 119178551 119179210 - Mical3 protein_coding processed_transcript MGP_AJ_T0079902.1 MGP_AJ_G0031181.1 mouse_genomes_project 6 119182740 119184565 - Mical3 protein_coding retained_intron MGP_AJ_T0099082.1 MGP_AJ_G0037055.1 mouse_genomes_project 6 127993446 127994040 + Gm43914 sense_intronic sense_intronic MGP_AJ_T0079630.1 MGP_AJ_G0031135.1 mouse_genomes_project 6 114388354 114430491 + MGP_AJ_P0079630 Zfand4 protein_coding protein_coding MGP_AJ_T0005124.1 MGP_AJ_G0004372.1 mouse_genomes_project 6 145000638 145006745 - Sspnos antisense antisense MGP_AJ_T0015462.1 MGP_AJ_G0013557.1 mouse_genomes_project 6 81703302 81703666 + processed_pseudogene processed_pseudogene MGP_AJ_T0077851.1 MGP_AJ_G0030774.1 mouse_genomes_project 6 54591531 54597821 - MGP_AJ_P0077851 Pyurf protein_coding protein_coding MGP_AJ_T0008795.1 MGP_AJ_G0007100.1 mouse_genomes_project 6 147202447 147203654 - Gm17216 lincRNA lincRNA MGP_AJ_T0080458.1 MGP_AJ_G0031300.1 mouse_genomes_project 6 127085007 127088516 - BC048546 protein_coding retained_intron MGP_AJ_T0080459.1 MGP_AJ_G0031300.1 mouse_genomes_project 6 127085013 127128043 - MGP_AJ_P0080459 BC048546 protein_coding protein_coding MGP_AJ_T0080460.1 MGP_AJ_G0031300.1 mouse_genomes_project 6 127093516 127098332 - BC048546 protein_coding retained_intron MGP_AJ_T0080461.1 MGP_AJ_G0031300.1 mouse_genomes_project 6 127103860 127105105 - BC048546 protein_coding retained_intron MGP_AJ_T0080462.1 MGP_AJ_G0031300.1 mouse_genomes_project 6 127120608 127123174 - BC048546 protein_coding retained_intron MGP_AJ_T0076438.1 MGP_AJ_G0030439.1 mouse_genomes_project 6 13483904 13518246 - MGP_AJ_P0076438 Tfec protein_coding protein_coding MGP_AJ_T0076439.1 MGP_AJ_G0030439.1 mouse_genomes_project 6 13483910 13551341 - MGP_AJ_P0076439 Tfec protein_coding nonsense_mediated_decay MGP_AJ_T0076440.1 MGP_AJ_G0030439.1 mouse_genomes_project 6 13485215 13485787 - MGP_AJ_P0076440 Tfec protein_coding protein_coding MGP_AJ_T0076441.1 MGP_AJ_G0030439.1 mouse_genomes_project 6 13491946 13551383 - Tfec protein_coding retained_intron MGP_AJ_T0076442.1 MGP_AJ_G0030439.1 mouse_genomes_project 6 13494727 13496527 - Tfec protein_coding retained_intron MGP_AJ_T0015440.1 MGP_AJ_G0013535.1 mouse_genomes_project 6 71193836 71194260 - processed_pseudogene processed_pseudogene MGP_AJ_T0076897.1 MGP_AJ_G0030524.1 mouse_genomes_project 6 28811795 29270472 - MGP_AJ_P0076897 Plxna4 protein_coding protein_coding MGP_AJ_T0076898.1 MGP_AJ_G0030524.1 mouse_genomes_project 6 28902013 28903440 - Plxna4 protein_coding retained_intron MGP_AJ_T0002017.1 MGP_AJ_G0001930.1 mouse_genomes_project 6 73219909 73221276 - TEC TEC MGP_AJ_T0076363.1 MGP_AJ_G0030426.1 mouse_genomes_project 6 5677687 5681689 + Nxph1 protein_coding processed_transcript MGP_AJ_T0076364.1 MGP_AJ_G0030426.1 mouse_genomes_project 6 5677870 5984018 + MGP_AJ_P0076364 Nxph1 protein_coding protein_coding MGP_AJ_T0076365.1 MGP_AJ_G0030426.1 mouse_genomes_project 6 5678932 5984016 + MGP_AJ_P0076365 Nxph1 protein_coding protein_coding MGP_AJ_T0079465.1 MGP_AJ_G0031106.1 mouse_genomes_project 6 111808254 111820936 - MGP_AJ_P0079465 Sec13 protein_coding protein_coding MGP_AJ_T0079466.1 MGP_AJ_G0031106.1 mouse_genomes_project 6 111810622 111815263 - Sec13 protein_coding retained_intron MGP_AJ_T0079467.1 MGP_AJ_G0031106.1 mouse_genomes_project 6 111810788 111815263 - Sec13 protein_coding retained_intron MGP_AJ_T0079468.1 MGP_AJ_G0031106.1 mouse_genomes_project 6 111819321 111820920 - Sec13 protein_coding retained_intron MGP_AJ_T0000312.1 MGP_AJ_G0000256.1 mouse_genomes_project 6 67601128 67601438 - IG_V_pseudogene IG_V_pseudogene MGP_AJ_T0080964.1 MGP_AJ_G0031446.1 mouse_genomes_project 6 141832467 141984845 - MGP_AJ_P0080964 St8sia1 protein_coding protein_coding MGP_AJ_T0080965.1 MGP_AJ_G0031446.1 mouse_genomes_project 6 141839154 141984534 - MGP_AJ_P0080965 St8sia1 protein_coding nonsense_mediated_decay MGP_AJ_T0080966.1 MGP_AJ_G0031446.1 mouse_genomes_project 6 141839783 141894317 - St8sia1 protein_coding processed_transcript MGP_AJ_T0015224.1 MGP_AJ_G0013319.1 mouse_genomes_project 6 11092 12574 + processed_pseudogene processed_pseudogene MGP_AJ_T0002495.1 MGP_AJ_G0002401.1 mouse_genomes_project 6 38294749 38294761 + MGP_AJ_P0002495 Trbd1 TR_D_gene TR_D_gene MGP_AJ_T0018272.1 MGP_AJ_G0015611.1 mouse_genomes_project 6 54386339 54550048 + processed_transcript processed_transcript MGP_AJ_T0008680.1 MGP_AJ_G0007013.1 mouse_genomes_project 6 87262341 87278289 - Gm44205 lincRNA lincRNA MGP_AJ_T0008681.1 MGP_AJ_G0007013.1 mouse_genomes_project 6 87262347 87266035 - Gm44205 lincRNA lincRNA MGP_AJ_T0008682.1 MGP_AJ_G0007013.1 mouse_genomes_project 6 87277214 87278258 - Gm44205 lincRNA lincRNA MGP_AJ_T0005017.1 MGP_AJ_G0004289.1 mouse_genomes_project 6 85651329 85652514 - Gm44210 antisense antisense MGP_AJ_T0078891.1 MGP_AJ_G0030985.1 mouse_genomes_project 6 87311885 87358264 - MGP_AJ_P0078891 Plxna1 protein_coding protein_coding MGP_AJ_T0078892.1 MGP_AJ_G0030985.1 mouse_genomes_project 6 87316204 87316670 - Plxna1 protein_coding retained_intron MGP_AJ_T0078893.1 MGP_AJ_G0030985.1 mouse_genomes_project 6 87318095 87320214 - MGP_AJ_P0078893 Plxna1 protein_coding nonsense_mediated_decay MGP_AJ_T0078894.1 MGP_AJ_G0030985.1 mouse_genomes_project 6 87325957 87328651 - Plxna1 protein_coding processed_transcript MGP_AJ_T0078895.1 MGP_AJ_G0030985.1 mouse_genomes_project 6 87330991 87338170 - MGP_AJ_P0078895 Plxna1 protein_coding nonsense_mediated_decay MGP_AJ_T0078211.1 MGP_AJ_G0030857.1 mouse_genomes_project 6 70943542 70976324 + MGP_AJ_P0078211 Suclg1 protein_coding protein_coding MGP_AJ_T0078212.1 MGP_AJ_G0030857.1 mouse_genomes_project 6 70943812 70963758 + MGP_AJ_P0078212 Suclg1 protein_coding nonsense_mediated_decay MGP_AJ_T0078213.1 MGP_AJ_G0030857.1 mouse_genomes_project 6 70943820 70976317 + MGP_AJ_P0078213 Suclg1 protein_coding protein_coding MGP_AJ_T0078214.1 MGP_AJ_G0030857.1 mouse_genomes_project 6 70943821 70952593 + Suclg1 protein_coding processed_transcript MGP_AJ_T0078215.1 MGP_AJ_G0030857.1 mouse_genomes_project 6 70943828 70962543 + Suclg1 protein_coding retained_intron MGP_AJ_T0078216.1 MGP_AJ_G0030857.1 mouse_genomes_project 6 70959845 70963754 + Suclg1 protein_coding retained_intron MGP_AJ_T0015637.1 MGP_AJ_G0013732.1 mouse_genomes_project 6 131151921 131152354 - processed_pseudogene processed_pseudogene MGP_AJ_T0101331.1 MGP_AJ_G0039297.1 mouse_genomes_project 6 25868220 25868351 + Gm26021 snoRNA snoRNA MGP_AJ_T0015605.1 MGP_AJ_G0013700.1 mouse_genomes_project 6 126838187 126838584 + processed_pseudogene processed_pseudogene MGP_AJ_T0015432.1 MGP_AJ_G0013527.1 mouse_genomes_project 6 69391292 69391876 - processed_pseudogene processed_pseudogene MGP_AJ_T0080006.1 MGP_AJ_G0031207.1 mouse_genomes_project 6 121329767 121357935 + MGP_AJ_P0080006 Clec4a4 protein_coding protein_coding MGP_AJ_T0002067.1 MGP_AJ_G0001980.1 mouse_genomes_project 6 86461306 86462282 + TEC TEC MGP_AJ_T0002564.1 MGP_AJ_G0002465.1 mouse_genomes_project 6 38297102 38297155 + MGP_AJ_P0002564 Trbj1-6 TR_J_gene TR_J_gene MGP_AJ_T0008532.1 MGP_AJ_G0006906.1 mouse_genomes_project 6 18671084 18753577 - Gm26719 lincRNA lincRNA MGP_AJ_T0008536.1 MGP_AJ_G0006909.1 mouse_genomes_project 6 26641198 26649183 + Smkr-ps lincRNA lincRNA MGP_AJ_T0008537.1 MGP_AJ_G0006909.1 mouse_genomes_project 6 26641200 26649436 + Smkr-ps lincRNA lincRNA MGP_AJ_T0102676.1 MGP_AJ_G0040418.1 mouse_genomes_project 6 39669784 39670098 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0001951.1 MGP_AJ_G0001864.1 mouse_genomes_project 6 35846195 35847412 - TEC TEC MGP_AJ_T0080799.1 MGP_AJ_G0031413.1 mouse_genomes_project 6 136704309 136733365 + Dera protein_coding retained_intron MGP_AJ_T0080800.1 MGP_AJ_G0031413.1 mouse_genomes_project 6 136704309 136711423 + Dera protein_coding processed_transcript MGP_AJ_T0080801.1 MGP_AJ_G0031413.1 mouse_genomes_project 6 136704319 136788096 + MGP_AJ_P0080801 Dera protein_coding protein_coding MGP_AJ_T0080802.1 MGP_AJ_G0031413.1 mouse_genomes_project 6 136704321 136788533 + MGP_AJ_P0080802 Dera protein_coding protein_coding MGP_AJ_T0080803.1 MGP_AJ_G0031413.1 mouse_genomes_project 6 136704339 136810045 + MGP_AJ_P0080803 Dera protein_coding protein_coding MGP_AJ_T0080804.1 MGP_AJ_G0031413.1 mouse_genomes_project 6 136704354 136715399 + Dera protein_coding processed_transcript MGP_AJ_T0080805.1 MGP_AJ_G0031413.1 mouse_genomes_project 6 136704378 136788075 + MGP_AJ_P0080805 Dera protein_coding protein_coding MGP_AJ_T0080806.1 MGP_AJ_G0031413.1 mouse_genomes_project 6 136711126 136711424 + Dera protein_coding TEC MGP_AJ_T0080807.1 MGP_AJ_G0031413.1 mouse_genomes_project 6 136723585 136734190 + Dera protein_coding processed_transcript MGP_AJ_T0080808.1 MGP_AJ_G0031413.1 mouse_genomes_project 6 136729205 136730870 + Dera protein_coding retained_intron MGP_AJ_T0080809.1 MGP_AJ_G0031413.1 mouse_genomes_project 6 136732035 136788122 + MGP_AJ_P0080809 Dera protein_coding protein_coding MGP_AJ_T0080810.1 MGP_AJ_G0031413.1 mouse_genomes_project 6 136748034 136760683 + Dera protein_coding processed_transcript MGP_AJ_T0080811.1 MGP_AJ_G0031413.1 mouse_genomes_project 6 136781007 136809519 + MGP_AJ_P0080811 Dera protein_coding protein_coding MGP_AJ_T0080812.1 MGP_AJ_G0031413.1 mouse_genomes_project 6 136786282 136788719 + Dera protein_coding retained_intron MGP_AJ_T0080813.1 MGP_AJ_G0031413.1 mouse_genomes_project 6 136787490 136794340 + MGP_AJ_P0080813 Dera protein_coding protein_coding MGP_AJ_T0098708.1 MGP_AJ_G0036692.1 mouse_genomes_project 6 57353350 57353469 + n-R5s162 rRNA rRNA MGP_AJ_T0077677.1 MGP_AJ_G0030724.1 mouse_genomes_project 6 50145007 50250558 + 9430076C15Rik protein_coding retained_intron MGP_AJ_T0077678.1 MGP_AJ_G0030724.1 mouse_genomes_project 6 50145007 50555025 + MGP_AJ_P0077678 9430076C15Rik protein_coding protein_coding MGP_AJ_T0077679.1 MGP_AJ_G0030724.1 mouse_genomes_project 6 50145023 50254721 + 9430076C15Rik protein_coding processed_transcript MGP_AJ_T0077680.1 MGP_AJ_G0030724.1 mouse_genomes_project 6 50145032 50257234 + 9430076C15Rik protein_coding processed_transcript MGP_AJ_T0077681.1 MGP_AJ_G0030724.1 mouse_genomes_project 6 50145055 50146460 + 9430076C15Rik protein_coding processed_transcript MGP_AJ_T0077682.1 MGP_AJ_G0030724.1 mouse_genomes_project 6 50145055 50503975 + 9430076C15Rik protein_coding processed_transcript MGP_AJ_T0077683.1 MGP_AJ_G0030724.1 mouse_genomes_project 6 50145055 50247967 + 9430076C15Rik protein_coding processed_transcript MGP_AJ_T0077684.1 MGP_AJ_G0030724.1 mouse_genomes_project 6 50145055 50467176 + 9430076C15Rik protein_coding retained_intron MGP_AJ_T0077685.1 MGP_AJ_G0030724.1 mouse_genomes_project 6 50145058 50268512 + 9430076C15Rik protein_coding processed_transcript MGP_AJ_T0077686.1 MGP_AJ_G0030724.1 mouse_genomes_project 6 50148175 50549445 + MGP_AJ_P0077686 9430076C15Rik protein_coding protein_coding MGP_AJ_T0077687.1 MGP_AJ_G0030724.1 mouse_genomes_project 6 50169115 50549445 + MGP_AJ_P0077687 9430076C15Rik protein_coding protein_coding MGP_AJ_T0077688.1 MGP_AJ_G0030724.1 mouse_genomes_project 6 50427697 50555016 + MGP_AJ_P0077688 9430076C15Rik protein_coding protein_coding MGP_AJ_T0077689.1 MGP_AJ_G0030724.1 mouse_genomes_project 6 50427772 50468672 + 9430076C15Rik protein_coding retained_intron MGP_AJ_T0077690.1 MGP_AJ_G0030724.1 mouse_genomes_project 6 50427773 50465522 + MGP_AJ_P0077690 9430076C15Rik protein_coding protein_coding MGP_AJ_T0015492.1 MGP_AJ_G0013587.1 mouse_genomes_project 6 92591915 92592134 - processed_pseudogene processed_pseudogene MGP_AJ_T0078086.1 MGP_AJ_G0030835.1 mouse_genomes_project 6 69602694 69634529 - MGP_AJ_P0078086 Ptcd3 protein_coding protein_coding MGP_AJ_T0078087.1 MGP_AJ_G0030835.1 mouse_genomes_project 6 69602695 69634529 - MGP_AJ_P0078087 Ptcd3 protein_coding nonsense_mediated_decay MGP_AJ_T0078088.1 MGP_AJ_G0030835.1 mouse_genomes_project 6 69602697 69615462 - Ptcd3 protein_coding retained_intron MGP_AJ_T0078089.1 MGP_AJ_G0030835.1 mouse_genomes_project 6 69606843 69634519 - MGP_AJ_P0078089 Ptcd3 protein_coding unknown_likely_coding MGP_AJ_T0078090.1 MGP_AJ_G0030835.1 mouse_genomes_project 6 69610897 69615387 - Ptcd3 protein_coding retained_intron MGP_AJ_T0078091.1 MGP_AJ_G0030835.1 mouse_genomes_project 6 69613046 69634523 - Ptcd3 protein_coding retained_intron MGP_AJ_T0078092.1 MGP_AJ_G0030835.1 mouse_genomes_project 6 69614400 69622931 - MGP_AJ_P0078092 Ptcd3 protein_coding nonsense_mediated_decay MGP_AJ_T0078093.1 MGP_AJ_G0030835.1 mouse_genomes_project 6 69618756 69620913 - Ptcd3 protein_coding retained_intron MGP_AJ_T0078094.1 MGP_AJ_G0030835.1 mouse_genomes_project 6 69621071 69624215 - Ptcd3 protein_coding retained_intron MGP_AJ_T0078095.1 MGP_AJ_G0030835.1 mouse_genomes_project 6 69624171 69634497 - MGP_AJ_P0078095 Ptcd3 protein_coding nonsense_mediated_decay MGP_AJ_T0078096.1 MGP_AJ_G0030835.1 mouse_genomes_project 6 69628465 69629250 - Ptcd3 protein_coding retained_intron MGP_AJ_T0100121.1 MGP_AJ_G0038087.1 mouse_genomes_project 6 124385811 124385921 + Gm24947 snRNA snRNA MGP_AJ_T0081116.1 MGP_AJ_G0031468.1 mouse_genomes_project 6 145898799 146037363 + MGP_AJ_P0081116 Ppfibp1 protein_coding protein_coding MGP_AJ_T0081117.1 MGP_AJ_G0031468.1 mouse_genomes_project 6 145898821 145982982 + MGP_AJ_P0081117 Ppfibp1 protein_coding protein_coding MGP_AJ_T0081118.1 MGP_AJ_G0031468.1 mouse_genomes_project 6 145898901 146037363 + MGP_AJ_P0081118 Ppfibp1 protein_coding protein_coding MGP_AJ_T0081121.1 MGP_AJ_G0031468.1 mouse_genomes_project 6 145981400 145997760 + MGP_AJ_P0081121 Ppfibp1 protein_coding protein_coding MGP_AJ_T0081122.1 MGP_AJ_G0031468.1 mouse_genomes_project 6 145997804 146011245 + MGP_AJ_P0081122 Ppfibp1 protein_coding protein_coding MGP_AJ_T0081123.1 MGP_AJ_G0031468.1 mouse_genomes_project 6 146001710 146007485 + Ppfibp1 protein_coding processed_transcript MGP_AJ_T0081124.1 MGP_AJ_G0031468.1 mouse_genomes_project 6 146004796 146037361 + Ppfibp1 protein_coding retained_intron MGP_AJ_T0081125.1 MGP_AJ_G0031468.1 mouse_genomes_project 6 146005558 146022775 + Ppfibp1 protein_coding retained_intron MGP_AJ_T0081126.1 MGP_AJ_G0031468.1 mouse_genomes_project 6 146006929 146011273 + Ppfibp1 protein_coding retained_intron MGP_AJ_T0081127.1 MGP_AJ_G0031468.1 mouse_genomes_project 6 146007478 146024508 + MGP_AJ_P0081127 Ppfibp1 protein_coding protein_coding MGP_AJ_T0081128.1 MGP_AJ_G0031468.1 mouse_genomes_project 6 146010346 146011603 + Ppfibp1 protein_coding retained_intron MGP_AJ_T0081129.1 MGP_AJ_G0031468.1 mouse_genomes_project 6 146016206 146024916 + MGP_AJ_P0081129 Ppfibp1 protein_coding protein_coding MGP_AJ_T0102671.1 MGP_AJ_G0040413.1 mouse_genomes_project 6 38241920 38243132 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0002684.1 MGP_AJ_G0002564.1 mouse_genomes_project 6 37969881 37970335 + MGP_AJ_P0002684 Trbv23 TR_V_gene TR_V_gene MGP_AJ_T0002685.1 MGP_AJ_G0002564.1 mouse_genomes_project 6 37969881 37970335 + MGP_AJ_P0002685 Trbv23 TR_V_gene TR_V_gene MGP_AJ_T0008756.1 MGP_AJ_G0007074.1 mouse_genomes_project 6 133234827 133254960 - Gm44448 lincRNA lincRNA MGP_AJ_T0010760.1 MGP_AJ_G0008882.1 mouse_genomes_project 6 35219299 35219368 + Mir7670 miRNA miRNA MGP_AJ_T0000291.1 MGP_AJ_G0000235.1 mouse_genomes_project 6 65972643 65973365 + IG_V_pseudogene IG_V_pseudogene MGP_AJ_T0080197.1 MGP_AJ_G0031250.1 mouse_genomes_project 6 123478104 123484522 + MGP_AJ_P0080197 Pianp protein_coding protein_coding MGP_AJ_T0080198.1 MGP_AJ_G0031250.1 mouse_genomes_project 6 123478287 123484522 + MGP_AJ_P0080198 Pianp protein_coding protein_coding MGP_AJ_T0080199.1 MGP_AJ_G0031250.1 mouse_genomes_project 6 123478500 123481157 + MGP_AJ_P0080199 Pianp protein_coding protein_coding MGP_AJ_T0080200.1 MGP_AJ_G0031250.1 mouse_genomes_project 6 123479862 123484522 + MGP_AJ_P0080200 Pianp protein_coding protein_coding MGP_AJ_T0080201.1 MGP_AJ_G0031250.1 mouse_genomes_project 6 123480035 123483569 + MGP_AJ_P0080201 Pianp protein_coding protein_coding MGP_AJ_T0080202.1 MGP_AJ_G0031250.1 mouse_genomes_project 6 123480064 123480871 + MGP_AJ_P0080202 Pianp protein_coding protein_coding MGP_AJ_T0080203.1 MGP_AJ_G0031250.1 mouse_genomes_project 6 123481087 123482475 + MGP_AJ_P0080203 Pianp protein_coding protein_coding MGP_AJ_T0079658.1 MGP_AJ_G0031142.1 mouse_genomes_project 6 114693946 114695040 - MGP_AJ_P0079658 Olfr215 protein_coding protein_coding MGP_AJ_T0077341.1 MGP_AJ_G0030644.1 mouse_genomes_project 6 39924442 39929111 + MGP_AJ_P0077341 Olfr437 protein_coding protein_coding MGP_AJ_T0077342.1 MGP_AJ_G0030644.1 mouse_genomes_project 6 39928093 39929111 + MGP_AJ_P0077342 Olfr437 protein_coding protein_coding MGP_AJ_T0078445.1 MGP_AJ_G0030908.1 mouse_genomes_project 6 81567412 81573095 + MGP_AJ_P0078445 Ankrd53 protein_coding protein_coding MGP_AJ_T0078446.1 MGP_AJ_G0030908.1 mouse_genomes_project 6 81567454 81572806 + MGP_AJ_P0078446 Ankrd53 protein_coding protein_coding MGP_AJ_T0015438.1 MGP_AJ_G0013533.1 mouse_genomes_project 6 70685605 70686191 - processed_pseudogene processed_pseudogene MGP_AJ_T0015545.1 MGP_AJ_G0013640.1 mouse_genomes_project 6 112253840 112254480 - processed_pseudogene processed_pseudogene MGP_AJ_T0077119.1 MGP_AJ_G0030566.1 mouse_genomes_project 6 35805615 35839382 - MGP_AJ_P0077119 Parp12 protein_coding protein_coding MGP_AJ_T0077120.1 MGP_AJ_G0030566.1 mouse_genomes_project 6 35808217 35810603 - Parp12 protein_coding retained_intron MGP_AJ_T0010769.1 MGP_AJ_G0008891.1 mouse_genomes_project 6 53035749 53035853 - Gm44413 miRNA miRNA MGP_AJ_T0079937.1 MGP_AJ_G0031190.1 mouse_genomes_project 6 120337225 120344822 - MGP_AJ_P0079937 unknown_likely_coding unknown_likely_coding MGP_AJ_T0077831.1 MGP_AJ_G0030763.1 mouse_genomes_project 6 54116717 54118246 + MGP_AJ_P0077831 Vmn1r14 protein_coding protein_coding MGP_AJ_T0080984.1 MGP_AJ_G0031448.1 mouse_genomes_project 6 142191040 142243100 + MGP_AJ_P0080984 Etnk1 protein_coding protein_coding MGP_AJ_T0080985.1 MGP_AJ_G0031448.1 mouse_genomes_project 6 142191049 142233156 + MGP_AJ_P0080985 Etnk1 protein_coding protein_coding MGP_AJ_T0080986.1 MGP_AJ_G0031448.1 mouse_genomes_project 6 142191073 142216131 + Etnk1 protein_coding retained_intron MGP_AJ_T0080987.1 MGP_AJ_G0031448.1 mouse_genomes_project 6 142191073 142256912 + MGP_AJ_P0080987 Etnk1 protein_coding protein_coding MGP_AJ_T0101381.1 MGP_AJ_G0039347.1 mouse_genomes_project 6 122354309 122354416 + Gm22763 snoRNA snoRNA MGP_AJ_T0081207.1 MGP_AJ_G0031484.1 mouse_genomes_project 6 148143931 148148373 + MGP_AJ_P0081207 Mettl20 protein_coding protein_coding MGP_AJ_T0081208.1 MGP_AJ_G0031484.1 mouse_genomes_project 6 148145595 148155300 + MGP_AJ_P0081208 Mettl20 protein_coding protein_coding MGP_AJ_T0081209.1 MGP_AJ_G0031484.1 mouse_genomes_project 6 148145595 148155295 + MGP_AJ_P0081209 Mettl20 protein_coding protein_coding MGP_AJ_T0081210.1 MGP_AJ_G0031484.1 mouse_genomes_project 6 148145598 148149219 + MGP_AJ_P0081210 Mettl20 protein_coding protein_coding MGP_AJ_T0081211.1 MGP_AJ_G0031484.1 mouse_genomes_project 6 148145636 148149219 + MGP_AJ_P0081211 Mettl20 protein_coding protein_coding MGP_AJ_T0081212.1 MGP_AJ_G0031484.1 mouse_genomes_project 6 148145646 148154527 + MGP_AJ_P0081212 Mettl20 protein_coding protein_coding MGP_AJ_T0081213.1 MGP_AJ_G0031484.1 mouse_genomes_project 6 148145656 148155300 + MGP_AJ_P0081213 Mettl20 protein_coding protein_coding MGP_AJ_T0081214.1 MGP_AJ_G0031484.1 mouse_genomes_project 6 148145720 148154542 + MGP_AJ_P0081214 Mettl20 protein_coding protein_coding MGP_AJ_T0081215.1 MGP_AJ_G0031484.1 mouse_genomes_project 6 148145728 148155300 + MGP_AJ_P0081215 Mettl20 protein_coding protein_coding MGP_AJ_T0008772.1 MGP_AJ_G0007084.1 mouse_genomes_project 6 140868968 140877833 + Gm44244 lincRNA lincRNA MGP_AJ_T0015235.1 MGP_AJ_G0013330.1 mouse_genomes_project 6 3504907 3505972 - processed_pseudogene processed_pseudogene MGP_AJ_T0002117.1 MGP_AJ_G0002030.1 mouse_genomes_project 6 111114091 111116205 - TEC TEC MGP_AJ_T0080624.1 MGP_AJ_G0031371.1 mouse_genomes_project 6 131675849 131676800 - MGP_AJ_P0080624 Tas2r109 protein_coding protein_coding MGP_AJ_T0015228.1 MGP_AJ_G0013323.1 mouse_genomes_project 6 1081264 1081871 + processed_pseudogene processed_pseudogene MGP_AJ_T0079403.1 MGP_AJ_G0031094.1 mouse_genomes_project 6 111535548 111547808 + MGP_AJ_P0079403 Il17re protein_coding protein_coding MGP_AJ_T0079404.1 MGP_AJ_G0031094.1 mouse_genomes_project 6 111535825 111537939 + Il17re protein_coding retained_intron MGP_AJ_T0079405.1 MGP_AJ_G0031094.1 mouse_genomes_project 6 111535871 111547447 + MGP_AJ_P0079405 Il17re protein_coding protein_coding MGP_AJ_T0079406.1 MGP_AJ_G0031094.1 mouse_genomes_project 6 111535898 111547432 + MGP_AJ_P0079406 Il17re protein_coding protein_coding MGP_AJ_T0079407.1 MGP_AJ_G0031094.1 mouse_genomes_project 6 111535959 111547201 + MGP_AJ_P0079407 Il17re protein_coding nonsense_mediated_decay MGP_AJ_T0079408.1 MGP_AJ_G0031094.1 mouse_genomes_project 6 111535959 111547201 + MGP_AJ_P0079408 Il17re protein_coding protein_coding MGP_AJ_T0079409.1 MGP_AJ_G0031094.1 mouse_genomes_project 6 111541865 111547806 + Il17re protein_coding retained_intron MGP_AJ_T0079410.1 MGP_AJ_G0031094.1 mouse_genomes_project 6 111543417 111547045 + Il17re protein_coding retained_intron MGP_AJ_T0002087.1 MGP_AJ_G0002000.1 mouse_genomes_project 6 90208705 90211149 - TEC TEC MGP_AJ_T0076379.1 MGP_AJ_G0030429.1 mouse_genomes_project 6 9011488 9433448 - MGP_AJ_P0076379 Thsd7a protein_coding protein_coding MGP_AJ_T0076380.1 MGP_AJ_G0030429.1 mouse_genomes_project 6 9016976 9433605 - MGP_AJ_P0076380 Thsd7a protein_coding protein_coding MGP_AJ_T0076381.1 MGP_AJ_G0030429.1 mouse_genomes_project 6 9017016 9018219 - Thsd7a protein_coding retained_intron MGP_AJ_T0076382.1 MGP_AJ_G0030429.1 mouse_genomes_project 6 9017238 9116438 - Thsd7a protein_coding processed_transcript MGP_AJ_T0076383.1 MGP_AJ_G0030429.1 mouse_genomes_project 6 9021529 9025421 - Thsd7a protein_coding retained_intron MGP_AJ_T0076384.1 MGP_AJ_G0030429.1 mouse_genomes_project 6 9162215 9247399 - Thsd7a protein_coding processed_transcript MGP_AJ_T0098714.1 MGP_AJ_G0036698.1 mouse_genomes_project 6 131246409 131246530 + n-R5s166 rRNA rRNA MGP_AJ_T0015564.1 MGP_AJ_G0013659.1 mouse_genomes_project 6 118731988 118732325 - processed_pseudogene processed_pseudogene MGP_AJ_T0076878.1 MGP_AJ_G0030521.1 mouse_genomes_project 6 28080850 28199499 + MGP_AJ_P0076878 Mkln1 protein_coding protein_coding MGP_AJ_T0076879.1 MGP_AJ_G0030521.1 mouse_genomes_project 6 28080943 28153356 + Mkln1 protein_coding retained_intron MGP_AJ_T0076880.1 MGP_AJ_G0030521.1 mouse_genomes_project 6 28080944 28118713 + Mkln1 protein_coding retained_intron MGP_AJ_T0076881.1 MGP_AJ_G0030521.1 mouse_genomes_project 6 28080951 28101547 + Mkln1 protein_coding retained_intron MGP_AJ_T0076882.1 MGP_AJ_G0030521.1 mouse_genomes_project 6 28080960 28086587 + Mkln1 protein_coding retained_intron MGP_AJ_T0076883.1 MGP_AJ_G0030521.1 mouse_genomes_project 6 28080960 28112978 + Mkln1 protein_coding retained_intron MGP_AJ_T0076884.1 MGP_AJ_G0030521.1 mouse_genomes_project 6 28080974 28115827 + Mkln1 protein_coding processed_transcript MGP_AJ_T0076885.1 MGP_AJ_G0030521.1 mouse_genomes_project 6 28112792 28171870 + Mkln1 protein_coding processed_transcript MGP_AJ_T0076886.1 MGP_AJ_G0030521.1 mouse_genomes_project 6 28112826 28156835 + Mkln1 protein_coding processed_transcript MGP_AJ_T0076887.1 MGP_AJ_G0030521.1 mouse_genomes_project 6 28150586 28175152 + Mkln1 protein_coding retained_intron MGP_AJ_T0076888.1 MGP_AJ_G0030521.1 mouse_genomes_project 6 28159321 28162933 + Mkln1 protein_coding retained_intron MGP_AJ_T0076889.1 MGP_AJ_G0030521.1 mouse_genomes_project 6 28171852 28190657 + MGP_AJ_P0076889 Mkln1 protein_coding protein_coding MGP_AJ_T0076890.1 MGP_AJ_G0030521.1 mouse_genomes_project 6 28175079 28190536 + Mkln1 protein_coding retained_intron MGP_AJ_T0080631.1 MGP_AJ_G0031376.1 mouse_genomes_project 6 132103767 132107343 + MGP_AJ_P0080631 5530400C23Rik protein_coding protein_coding MGP_AJ_T0000147.1 MGP_AJ_G0000112.1 mouse_genomes_project 6 65226206 65226982 + MGP_AJ_P0000147 Igkv1-110 IG_V_gene IG_V_gene MGP_AJ_T0008668.1 MGP_AJ_G0007004.1 mouse_genomes_project 6 84593802 84594407 - Gm44214 lincRNA lincRNA MGP_AJ_T0076812.1 MGP_AJ_G0030509.1 mouse_genomes_project 6 27068651 27120825 + MGP_AJ_P0076812 Klhdc10 protein_coding protein_coding MGP_AJ_T0076813.1 MGP_AJ_G0030509.1 mouse_genomes_project 6 27068777 27122721 + MGP_AJ_P0076813 Klhdc10 protein_coding protein_coding MGP_AJ_T0076814.1 MGP_AJ_G0030509.1 mouse_genomes_project 6 27068781 27118099 + MGP_AJ_P0076814 Klhdc10 protein_coding protein_coding MGP_AJ_T0076815.1 MGP_AJ_G0030509.1 mouse_genomes_project 6 27084014 27114984 + MGP_AJ_P0076815 Klhdc10 protein_coding protein_coding MGP_AJ_T0076816.1 MGP_AJ_G0030509.1 mouse_genomes_project 6 27111304 27118378 + Klhdc10 protein_coding retained_intron MGP_AJ_T0015240.1 MGP_AJ_G0013335.1 mouse_genomes_project 6 4598711 4599099 - processed_pseudogene processed_pseudogene MGP_AJ_T0011623.1 MGP_AJ_G0009745.1 mouse_genomes_project 6 14343660 14343792 + Gm27755 misc_RNA misc_RNA MGP_AJ_T0008671.1 MGP_AJ_G0007007.1 mouse_genomes_project 6 85596077 85611895 - 1810020O05Rik lincRNA lincRNA MGP_AJ_T0101339.1 MGP_AJ_G0039305.1 mouse_genomes_project 6 47342036 47342167 - Gm26289 snoRNA snoRNA MGP_AJ_T0015667.1 MGP_AJ_G0013762.1 mouse_genomes_project 6 145475845 145476127 - processed_pseudogene processed_pseudogene MGP_AJ_T0000268.1 MGP_AJ_G0000212.1 mouse_genomes_project 6 39699543 39700001 + IG_V_pseudogene IG_V_pseudogene MGP_AJ_T0005084.1 MGP_AJ_G0004338.1 mouse_genomes_project 6 125630561 125632640 + antisense antisense MGP_AJ_T0077810.1 MGP_AJ_G0030752.1 mouse_genomes_project 6 53734982 53754469 - MGP_AJ_P0077810 Nt5c3 protein_coding protein_coding MGP_AJ_T0077811.1 MGP_AJ_G0030752.1 mouse_genomes_project 6 53734982 53777018 - MGP_AJ_P0077811 Nt5c3 protein_coding protein_coding MGP_AJ_T0077812.1 MGP_AJ_G0030752.1 mouse_genomes_project 6 53735533 53776905 - MGP_AJ_P0077812 Nt5c3 protein_coding nonsense_mediated_decay MGP_AJ_T0077813.1 MGP_AJ_G0030752.1 mouse_genomes_project 6 53735566 53776962 - MGP_AJ_P0077813 Nt5c3 protein_coding nonsense_mediated_decay MGP_AJ_T0077814.1 MGP_AJ_G0030752.1 mouse_genomes_project 6 53737373 53776810 - MGP_AJ_P0077814 Nt5c3 protein_coding protein_coding MGP_AJ_T0077815.1 MGP_AJ_G0030752.1 mouse_genomes_project 6 53739247 53742446 - Nt5c3 protein_coding retained_intron MGP_AJ_T0077816.1 MGP_AJ_G0030752.1 mouse_genomes_project 6 53744121 53776976 - Nt5c3 protein_coding processed_transcript MGP_AJ_T0077817.1 MGP_AJ_G0030752.1 mouse_genomes_project 6 53745383 53776943 - Nt5c3 protein_coding processed_transcript MGP_AJ_T0077818.1 MGP_AJ_G0030752.1 mouse_genomes_project 6 53748376 53754466 - Nt5c3 protein_coding retained_intron MGP_AJ_T0077164.1 MGP_AJ_G0030575.1 mouse_genomes_project 6 36335535 36461068 - MGP_AJ_P0077164 Braf protein_coding protein_coding MGP_AJ_T0077165.1 MGP_AJ_G0030575.1 mouse_genomes_project 6 36346410 36460798 - MGP_AJ_P0077165 Braf protein_coding protein_coding MGP_AJ_T0077166.1 MGP_AJ_G0030575.1 mouse_genomes_project 6 36371586 36377081 - Braf protein_coding retained_intron MGP_AJ_T0077167.1 MGP_AJ_G0030575.1 mouse_genomes_project 6 36372601 36375549 - Braf protein_coding retained_intron MGP_AJ_T0077168.1 MGP_AJ_G0030575.1 mouse_genomes_project 6 36383873 36397897 - Braf protein_coding retained_intron MGP_AJ_T0078807.1 MGP_AJ_G0030976.1 mouse_genomes_project 6 86406541 86439726 + MGP_AJ_P0078807 Ruvbl1 protein_coding protein_coding MGP_AJ_T0078808.1 MGP_AJ_G0030976.1 mouse_genomes_project 6 86406660 86439718 + MGP_AJ_P0078808 Ruvbl1 protein_coding unknown_likely_coding MGP_AJ_T0078809.1 MGP_AJ_G0030976.1 mouse_genomes_project 6 86406859 86425039 + MGP_AJ_P0078809 Ruvbl1 protein_coding protein_coding MGP_AJ_T0080500.1 MGP_AJ_G0031312.1 mouse_genomes_project 6 127750177 127756349 + MGP_AJ_P0080500 Clec2d protein_coding protein_coding MGP_AJ_T0015233.1 MGP_AJ_G0013328.1 mouse_genomes_project 6 3093806 3094031 - processed_pseudogene processed_pseudogene MGP_AJ_T0015239.1 MGP_AJ_G0013334.1 mouse_genomes_project 6 4399490 4400127 + processed_pseudogene processed_pseudogene MGP_AJ_T0077455.1 MGP_AJ_G0030668.1 mouse_genomes_project 6 45359339 45362294 - Rarres2 protein_coding retained_intron MGP_AJ_T0077456.1 MGP_AJ_G0030668.1 mouse_genomes_project 6 45359339 45362336 - MGP_AJ_P0077456 Rarres2 protein_coding protein_coding MGP_AJ_T0077457.1 MGP_AJ_G0030668.1 mouse_genomes_project 6 45359339 45362403 - MGP_AJ_P0077457 Rarres2 protein_coding protein_coding MGP_AJ_T0077458.1 MGP_AJ_G0030668.1 mouse_genomes_project 6 45359339 45362435 - MGP_AJ_P0077458 Rarres2 protein_coding protein_coding MGP_AJ_T0077459.1 MGP_AJ_G0030668.1 mouse_genomes_project 6 45359353 45362437 - MGP_AJ_P0077459 Rarres2 protein_coding protein_coding MGP_AJ_T0015330.1 MGP_AJ_G0013425.1 mouse_genomes_project 6 45456463 45456921 - processed_pseudogene processed_pseudogene MGP_AJ_T0015542.1 MGP_AJ_G0013637.1 mouse_genomes_project 6 111641398 111641623 - processed_pseudogene processed_pseudogene MGP_AJ_T0018224.1 MGP_AJ_G0015600.1 mouse_genomes_project 6 5251393 5273044 - A430035B10Rik processed_transcript processed_transcript MGP_AJ_T0018225.1 MGP_AJ_G0015600.1 mouse_genomes_project 6 5252531 5260587 - A430035B10Rik processed_transcript processed_transcript MGP_AJ_T0018226.1 MGP_AJ_G0015600.1 mouse_genomes_project 6 5253638 5271681 - A430035B10Rik processed_transcript processed_transcript MGP_AJ_T0018227.1 MGP_AJ_G0015600.1 mouse_genomes_project 6 5255020 5271624 - A430035B10Rik processed_transcript retained_intron MGP_AJ_T0018228.1 MGP_AJ_G0015600.1 mouse_genomes_project 6 5269659 5271741 - A430035B10Rik processed_transcript processed_transcript MGP_AJ_T0002064.1 MGP_AJ_G0001977.1 mouse_genomes_project 6 85921759 85922803 - TEC TEC MGP_AJ_T0015678.1 MGP_AJ_G0013773.1 mouse_genomes_project 6 148074859 148075794 + processed_pseudogene processed_pseudogene MGP_AJ_T0080600.1 MGP_AJ_G0031348.1 mouse_genomes_project 6 130344362 130345394 - MGP_AJ_P0080600 Tas2r107 protein_coding protein_coding MGP_AJ_T0001983.1 MGP_AJ_G0001896.1 mouse_genomes_project 6 49092057 49093300 - TEC TEC MGP_AJ_T0078296.1 MGP_AJ_G0030880.1 mouse_genomes_project 6 80841614 80844920 - MGP_AJ_P0078296 Htra2 protein_coding protein_coding MGP_AJ_T0078297.1 MGP_AJ_G0030880.1 mouse_genomes_project 6 80841614 80844920 - MGP_AJ_P0078297 Htra2 protein_coding protein_coding MGP_AJ_T0078298.1 MGP_AJ_G0030880.1 mouse_genomes_project 6 80841614 80844791 - MGP_AJ_P0078298 Htra2 protein_coding protein_coding MGP_AJ_T0078299.1 MGP_AJ_G0030880.1 mouse_genomes_project 6 80841628 80844920 - MGP_AJ_P0078299 Htra2 protein_coding nonsense_mediated_decay MGP_AJ_T0078300.1 MGP_AJ_G0030880.1 mouse_genomes_project 6 80841632 80845622 - Htra2 protein_coding retained_intron MGP_AJ_T0078301.1 MGP_AJ_G0030880.1 mouse_genomes_project 6 80841735 80844035 - MGP_AJ_P0078301 Htra2 protein_coding nonsense_mediated_decay MGP_AJ_T0078302.1 MGP_AJ_G0030880.1 mouse_genomes_project 6 80841825 80844186 - MGP_AJ_P0078302 Htra2 protein_coding protein_coding MGP_AJ_T0078303.1 MGP_AJ_G0030880.1 mouse_genomes_project 6 80841834 80844186 - Htra2 protein_coding retained_intron MGP_AJ_T0078304.1 MGP_AJ_G0030880.1 mouse_genomes_project 6 80842099 80844386 - MGP_AJ_P0078304 Htra2 protein_coding protein_coding MGP_AJ_T0078305.1 MGP_AJ_G0030880.1 mouse_genomes_project 6 80843386 80845514 - Htra2 protein_coding processed_transcript MGP_AJ_T0078306.1 MGP_AJ_G0030880.1 mouse_genomes_project 6 80843495 80844234 - Htra2 protein_coding processed_transcript MGP_AJ_T0078794.1 MGP_AJ_G0030973.1 mouse_genomes_project 6 86127540 86140790 + MGP_AJ_P0078794 Gata2 protein_coding protein_coding MGP_AJ_T0078795.1 MGP_AJ_G0030973.1 mouse_genomes_project 6 86132004 86140788 + MGP_AJ_P0078795 Gata2 protein_coding protein_coding MGP_AJ_T0078796.1 MGP_AJ_G0030973.1 mouse_genomes_project 6 86132004 86133421 + MGP_AJ_P0078796 Gata2 protein_coding protein_coding MGP_AJ_T0078797.1 MGP_AJ_G0030973.1 mouse_genomes_project 6 86134676 86136399 + Gata2 protein_coding retained_intron MGP_AJ_T0078798.1 MGP_AJ_G0030973.1 mouse_genomes_project 6 86138202 86139529 + Gata2 protein_coding retained_intron MGP_AJ_T0077566.1 MGP_AJ_G0030697.1 mouse_genomes_project 6 46627002 46633790 + MGP_AJ_P0077566 Npy protein_coding protein_coding MGP_AJ_T0076830.1 MGP_AJ_G0030512.1 mouse_genomes_project 6 27209444 27232239 + MGP_AJ_P0076830 Cpa2 protein_coding protein_coding MGP_AJ_T0076831.1 MGP_AJ_G0030512.1 mouse_genomes_project 6 27209504 27212336 + Cpa2 protein_coding retained_intron MGP_AJ_T0076832.1 MGP_AJ_G0030512.1 mouse_genomes_project 6 27209532 27214974 + Cpa2 protein_coding processed_transcript MGP_AJ_T0076833.1 MGP_AJ_G0030512.1 mouse_genomes_project 6 27211071 27212856 + Cpa2 protein_coding retained_intron MGP_AJ_T0076834.1 MGP_AJ_G0030512.1 mouse_genomes_project 6 27211779 27219888 + Cpa2 protein_coding retained_intron MGP_AJ_T0076835.1 MGP_AJ_G0030512.1 mouse_genomes_project 6 27212348 27217124 + Cpa2 protein_coding retained_intron MGP_AJ_T0076836.1 MGP_AJ_G0030512.1 mouse_genomes_project 6 27214505 27215019 + Cpa2 protein_coding processed_transcript MGP_AJ_T0076837.1 MGP_AJ_G0030512.1 mouse_genomes_project 6 27219734 27232011 + Cpa2 protein_coding retained_intron MGP_AJ_T0015543.1 MGP_AJ_G0013638.1 mouse_genomes_project 6 112137131 112137207 + processed_pseudogene processed_pseudogene MGP_AJ_T0010808.1 MGP_AJ_G0008930.1 mouse_genomes_project 6 123208555 123208624 - Mir200c miRNA miRNA MGP_AJ_T0015390.1 MGP_AJ_G0013485.1 mouse_genomes_project 6 62351647 62352842 - processed_pseudogene processed_pseudogene MGP_AJ_T0000173.1 MGP_AJ_G0000131.1 mouse_genomes_project 6 66205567 66206064 - MGP_AJ_P0000173 Gm42543 IG_V_gene IG_V_gene MGP_AJ_T0015509.1 MGP_AJ_G0013604.1 mouse_genomes_project 6 99070320 99071992 + processed_pseudogene processed_pseudogene MGP_AJ_T0077769.1 MGP_AJ_G0030743.1 mouse_genomes_project 6 52312566 52359404 + MGP_AJ_P0077769 Adcyap1r1 protein_coding protein_coding MGP_AJ_T0077770.1 MGP_AJ_G0030743.1 mouse_genomes_project 6 52312616 52361944 + MGP_AJ_P0077770 Adcyap1r1 protein_coding protein_coding MGP_AJ_T0077771.1 MGP_AJ_G0030743.1 mouse_genomes_project 6 52312645 52338725 + MGP_AJ_P0077771 Adcyap1r1 protein_coding protein_coding MGP_AJ_T0077772.1 MGP_AJ_G0030743.1 mouse_genomes_project 6 52312765 52320815 + MGP_AJ_P0077772 Adcyap1r1 protein_coding protein_coding MGP_AJ_T0077773.1 MGP_AJ_G0030743.1 mouse_genomes_project 6 52320805 52357927 + MGP_AJ_P0077773 Adcyap1r1 protein_coding protein_coding MGP_AJ_T0077774.1 MGP_AJ_G0030743.1 mouse_genomes_project 6 52320805 52357670 + MGP_AJ_P0077774 Adcyap1r1 protein_coding protein_coding MGP_AJ_T0077775.1 MGP_AJ_G0030743.1 mouse_genomes_project 6 52320805 52357670 + MGP_AJ_P0077775 Adcyap1r1 protein_coding protein_coding MGP_AJ_T0077776.1 MGP_AJ_G0030743.1 mouse_genomes_project 6 52320805 52357670 + MGP_AJ_P0077776 Adcyap1r1 protein_coding protein_coding MGP_AJ_T0078069.1 MGP_AJ_G0030832.1 mouse_genomes_project 6 69426770 69530480 + MGP_AJ_P0078069 Reep1 protein_coding protein_coding MGP_AJ_T0080285.1 MGP_AJ_G0031260.1 mouse_genomes_project 6 123676892 123678654 + Mrpl51 protein_coding processed_transcript MGP_AJ_T0080286.1 MGP_AJ_G0031260.1 mouse_genomes_project 6 123677256 123681520 + MGP_AJ_P0080286 Mrpl51 protein_coding protein_coding MGP_AJ_T0080287.1 MGP_AJ_G0031260.1 mouse_genomes_project 6 123677308 123677970 + Mrpl51 protein_coding retained_intron MGP_AJ_T0077594.1 MGP_AJ_G0030702.1 mouse_genomes_project 6 47461432 47465200 - MGP_AJ_P0077594 Npvf protein_coding protein_coding MGP_AJ_T0001988.1 MGP_AJ_G0001901.1 mouse_genomes_project 6 50522707 50524907 + TEC TEC MGP_AJ_T0078917.1 MGP_AJ_G0030999.1 mouse_genomes_project 6 88132771 88135338 + MGP_AJ_P0078917 Vmn1r51 protein_coding protein_coding MGP_AJ_T0079986.1 MGP_AJ_G0031201.1 mouse_genomes_project 6 121071372 121091053 - MGP_AJ_P0079986 Slc2a3 protein_coding protein_coding MGP_AJ_T0079987.1 MGP_AJ_G0031201.1 mouse_genomes_project 6 121071389 121090830 - Slc2a3 protein_coding retained_intron MGP_AJ_T0079988.1 MGP_AJ_G0031201.1 mouse_genomes_project 6 121073494 121090698 - MGP_AJ_P0079988 Slc2a3 protein_coding nonsense_mediated_decay MGP_AJ_T0079989.1 MGP_AJ_G0031201.1 mouse_genomes_project 6 121074892 121076510 - Slc2a3 protein_coding retained_intron MGP_AJ_T0079990.1 MGP_AJ_G0031201.1 mouse_genomes_project 6 121085361 121151367 - MGP_AJ_P0079990 Slc2a3 protein_coding protein_coding MGP_AJ_T0079991.1 MGP_AJ_G0031201.1 mouse_genomes_project 6 121085554 121128731 - MGP_AJ_P0079991 Slc2a3 protein_coding nonsense_mediated_decay MGP_AJ_T0079992.1 MGP_AJ_G0031201.1 mouse_genomes_project 6 121088145 121090570 - MGP_AJ_P0079992 Slc2a3 protein_coding protein_coding MGP_AJ_T0079993.1 MGP_AJ_G0031201.1 mouse_genomes_project 6 121088204 121091228 - MGP_AJ_P0079993 Slc2a3 protein_coding protein_coding MGP_AJ_T0080123.1 MGP_AJ_G0031237.1 mouse_genomes_project 6 123260904 123270571 - MGP_AJ_P0080123 Lrrc23 protein_coding protein_coding MGP_AJ_T0080124.1 MGP_AJ_G0031237.1 mouse_genomes_project 6 123260910 123270580 - MGP_AJ_P0080124 Lrrc23 protein_coding protein_coding MGP_AJ_T0080125.1 MGP_AJ_G0031237.1 mouse_genomes_project 6 123261646 123265460 - Lrrc23 protein_coding retained_intron MGP_AJ_T0080126.1 MGP_AJ_G0031237.1 mouse_genomes_project 6 123269114 123270570 - MGP_AJ_P0080126 Lrrc23 protein_coding protein_coding MGP_AJ_T0080127.1 MGP_AJ_G0031237.1 mouse_genomes_project 6 123269753 123270557 - MGP_AJ_P0080127 Lrrc23 protein_coding protein_coding MGP_AJ_T0079085.1 MGP_AJ_G0031034.1 mouse_genomes_project 6 92713486 92810775 - MGP_AJ_P0079085 Lrig1 protein_coding nonsense_mediated_decay MGP_AJ_T0079086.1 MGP_AJ_G0031034.1 mouse_genomes_project 6 92713491 92810762 - MGP_AJ_P0079086 Lrig1 protein_coding protein_coding MGP_AJ_T0079087.1 MGP_AJ_G0031034.1 mouse_genomes_project 6 92713493 92810754 - MGP_AJ_P0079087 Lrig1 protein_coding protein_coding MGP_AJ_T0079088.1 MGP_AJ_G0031034.1 mouse_genomes_project 6 92713636 92714350 - Lrig1 protein_coding processed_transcript MGP_AJ_T0079089.1 MGP_AJ_G0031034.1 mouse_genomes_project 6 92733959 92791262 - Lrig1 protein_coding processed_transcript MGP_AJ_T0079090.1 MGP_AJ_G0031034.1 mouse_genomes_project 6 92735375 92765910 - Lrig1 protein_coding processed_transcript MGP_AJ_T0079091.1 MGP_AJ_G0031034.1 mouse_genomes_project 6 92737000 92789498 - Lrig1 protein_coding processed_transcript MGP_AJ_T0011632.1 MGP_AJ_G0009754.1 mouse_genomes_project 6 15988674 15988932 - Gm24213 misc_RNA misc_RNA MGP_AJ_T0008678.1 MGP_AJ_G0007011.1 mouse_genomes_project 6 87202799 87207873 - Gm839 lincRNA lincRNA MGP_AJ_T0078506.1 MGP_AJ_G0030915.1 mouse_genomes_project 6 82442813 82883628 - MGP_AJ_P0078506 Exoc6b protein_coding protein_coding MGP_AJ_T0078507.1 MGP_AJ_G0030915.1 mouse_genomes_project 6 82642713 82883628 - Exoc6b protein_coding retained_intron MGP_AJ_T0078508.1 MGP_AJ_G0030915.1 mouse_genomes_project 6 82643592 82883572 - Exoc6b protein_coding retained_intron MGP_AJ_T0078509.1 MGP_AJ_G0030915.1 mouse_genomes_project 6 82661321 82883617 - MGP_AJ_P0078509 Exoc6b protein_coding nonsense_mediated_decay MGP_AJ_T0078510.1 MGP_AJ_G0030915.1 mouse_genomes_project 6 82701121 82705130 - Exoc6b protein_coding retained_intron MGP_AJ_T0078511.1 MGP_AJ_G0030915.1 mouse_genomes_project 6 82756853 82883617 - Exoc6b protein_coding processed_transcript MGP_AJ_T0078512.1 MGP_AJ_G0030915.1 mouse_genomes_project 6 82799893 82883583 - Exoc6b protein_coding retained_intron MGP_AJ_T0078513.1 MGP_AJ_G0030915.1 mouse_genomes_project 6 82817503 82883590 - Exoc6b protein_coding retained_intron MGP_AJ_T0008535.1 MGP_AJ_G0006908.1 mouse_genomes_project 6 25607494 25656840 + Gm3294 lincRNA lincRNA MGP_AJ_T0002142.1 MGP_AJ_G0002054.1 mouse_genomes_project 6 126008971 126011861 + TEC TEC MGP_AJ_T0015410.1 MGP_AJ_G0013505.1 mouse_genomes_project 6 64508830 64509251 - processed_pseudogene processed_pseudogene MGP_AJ_T0079830.1 MGP_AJ_G0031168.1 mouse_genomes_project 6 118228485 118341283 + MGP_AJ_P0079830 Ninj2 protein_coding protein_coding MGP_AJ_T0079831.1 MGP_AJ_G0031168.1 mouse_genomes_project 6 118334766 118341278 + MGP_AJ_P0079831 Ninj2 protein_coding protein_coding MGP_AJ_T0101380.1 MGP_AJ_G0039346.1 mouse_genomes_project 6 122170802 122170919 - Gm23079 snoRNA snoRNA MGP_AJ_T0102700.1 MGP_AJ_G0040442.1 mouse_genomes_project 6 79646648 79650220 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0080524.1 MGP_AJ_G0031320.1 mouse_genomes_project 6 128059722 128081936 - MGP_AJ_P0080524 Olr1 protein_coding protein_coding MGP_AJ_T0080525.1 MGP_AJ_G0031320.1 mouse_genomes_project 6 128062348 128081878 - MGP_AJ_P0080525 Olr1 protein_coding protein_coding MGP_AJ_T0080526.1 MGP_AJ_G0031320.1 mouse_genomes_project 6 128062348 128081878 - MGP_AJ_P0080526 Olr1 protein_coding protein_coding MGP_AJ_T0080527.1 MGP_AJ_G0031320.1 mouse_genomes_project 6 128062387 128071639 - MGP_AJ_P0080527 Olr1 protein_coding protein_coding MGP_AJ_T0080528.1 MGP_AJ_G0031320.1 mouse_genomes_project 6 128074692 128081936 - MGP_AJ_P0080528 Olr1 protein_coding protein_coding MGP_AJ_T0077891.1 MGP_AJ_G0030786.1 mouse_genomes_project 6 56005361 56007205 - MGP_AJ_P0077891 Nap1l5 protein_coding protein_coding MGP_AJ_T0077892.1 MGP_AJ_G0030786.1 mouse_genomes_project 6 56005932 56006802 - MGP_AJ_P0077892 Nap1l5 protein_coding protein_coding MGP_AJ_T0079048.1 MGP_AJ_G0031026.1 mouse_genomes_project 6 90251386 90283463 - MGP_AJ_P0079048 Rbsn protein_coding protein_coding MGP_AJ_T0079049.1 MGP_AJ_G0031026.1 mouse_genomes_project 6 90254515 90264397 - MGP_AJ_P0079049 Rbsn protein_coding protein_coding MGP_AJ_T0079050.1 MGP_AJ_G0031026.1 mouse_genomes_project 6 90255057 90266300 - Rbsn protein_coding processed_transcript MGP_AJ_T0079051.1 MGP_AJ_G0031026.1 mouse_genomes_project 6 90255420 90258803 - Rbsn protein_coding retained_intron MGP_AJ_T0079052.1 MGP_AJ_G0031026.1 mouse_genomes_project 6 90275559 90283387 - MGP_AJ_P0079052 Rbsn protein_coding protein_coding MGP_AJ_T0079053.1 MGP_AJ_G0031026.1 mouse_genomes_project 6 90280052 90283107 - MGP_AJ_P0079053 Rbsn protein_coding protein_coding MGP_AJ_T0008662.1 MGP_AJ_G0006999.1 mouse_genomes_project 6 82357833 82358279 + 4930504D19Rik lincRNA lincRNA MGP_AJ_T0002176.1 MGP_AJ_G0002088.1 mouse_genomes_project 6 144344167 144345077 + TEC TEC MGP_AJ_T0102695.1 MGP_AJ_G0040437.1 mouse_genomes_project 6 58134324 58134589 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0076893.1 MGP_AJ_G0030523.1 mouse_genomes_project 6 28718788 28727464 + 1700012A03Rik protein_coding processed_transcript MGP_AJ_T0076894.1 MGP_AJ_G0030523.1 mouse_genomes_project 6 28718810 28727464 + 1700012A03Rik protein_coding processed_transcript MGP_AJ_T0076895.1 MGP_AJ_G0030523.1 mouse_genomes_project 6 28718827 28727458 + MGP_AJ_P0076895 1700012A03Rik protein_coding protein_coding MGP_AJ_T0076896.1 MGP_AJ_G0030523.1 mouse_genomes_project 6 28726683 28727164 + 1700012A03Rik protein_coding processed_transcript MGP_AJ_T0015675.1 MGP_AJ_G0013770.1 mouse_genomes_project 6 147892993 147893164 - processed_pseudogene processed_pseudogene MGP_AJ_T0002078.1 MGP_AJ_G0001991.1 mouse_genomes_project 6 89256171 89259000 - TEC TEC MGP_AJ_T0078346.1 MGP_AJ_G0030890.1 mouse_genomes_project 6 80910204 80912438 - MGP_AJ_P0078346 Wbp1 protein_coding protein_coding MGP_AJ_T0078347.1 MGP_AJ_G0030890.1 mouse_genomes_project 6 80910210 80912726 - MGP_AJ_P0078347 Wbp1 protein_coding protein_coding MGP_AJ_T0078348.1 MGP_AJ_G0030890.1 mouse_genomes_project 6 80910211 80912726 - Wbp1 protein_coding retained_intron MGP_AJ_T0078349.1 MGP_AJ_G0030890.1 mouse_genomes_project 6 80910473 80912554 - MGP_AJ_P0078349 Wbp1 protein_coding protein_coding MGP_AJ_T0078350.1 MGP_AJ_G0030890.1 mouse_genomes_project 6 80910716 80911375 - MGP_AJ_P0078350 Wbp1 protein_coding protein_coding MGP_AJ_T0078351.1 MGP_AJ_G0030890.1 mouse_genomes_project 6 80910801 80912045 - Wbp1 protein_coding retained_intron MGP_AJ_T0078352.1 MGP_AJ_G0030890.1 mouse_genomes_project 6 80910806 80912426 - Wbp1 protein_coding processed_transcript MGP_AJ_T0078353.1 MGP_AJ_G0030890.1 mouse_genomes_project 6 80911725 80912441 - MGP_AJ_P0078353 Wbp1 protein_coding protein_coding MGP_AJ_T0015643.1 MGP_AJ_G0013738.1 mouse_genomes_project 6 131835352 131835698 - processed_pseudogene processed_pseudogene MGP_AJ_T0102725.1 MGP_AJ_G0040466.1 mouse_genomes_project 6 130968439 130971398 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0001997.1 MGP_AJ_G0001910.1 mouse_genomes_project 6 57883483 57887511 - TEC TEC MGP_AJ_T0015662.1 MGP_AJ_G0013757.1 mouse_genomes_project 6 140105996 140106526 + processed_pseudogene processed_pseudogene MGP_AJ_T0010812.1 MGP_AJ_G0008934.1 mouse_genomes_project 6 126311785 126311845 - Mir7233 miRNA miRNA MGP_AJ_T0080033.1 MGP_AJ_G0031216.1 mouse_genomes_project 6 121712805 121737146 - MGP_AJ_P0080033 protein_coding protein_coding MGP_AJ_T0077305.1 MGP_AJ_G0030624.1 mouse_genomes_project 6 39135548 39136641 + MGP_AJ_P0077305 Tas2r135 protein_coding protein_coding MGP_AJ_T0011640.1 MGP_AJ_G0009762.1 mouse_genomes_project 6 48993946 48994071 + Gm27867 misc_RNA misc_RNA MGP_AJ_T0008767.1 MGP_AJ_G0007080.1 mouse_genomes_project 6 134559099 134570586 + Gm14329 lincRNA lincRNA MGP_AJ_T0015352.1 MGP_AJ_G0013447.1 mouse_genomes_project 6 49701982 49702575 - processed_pseudogene processed_pseudogene MGP_AJ_T0079095.1 MGP_AJ_G0031036.1 mouse_genomes_project 6 93429951 93430050 + MGP_AJ_P0079095 Gm10234 protein_coding protein_coding MGP_AJ_T0079776.1 MGP_AJ_G0031164.1 mouse_genomes_project 6 117602337 117605290 + MGP_AJ_P0079776 Fbxl14 protein_coding protein_coding MGP_AJ_T0008710.1 MGP_AJ_G0007035.1 mouse_genomes_project 6 105250490 105345747 - Gm44398 lincRNA lincRNA MGP_AJ_T0079298.1 MGP_AJ_G0031079.1 mouse_genomes_project 6 110774347 111010492 - MGP_AJ_P0079298 Srgap3 protein_coding protein_coding MGP_AJ_T0079299.1 MGP_AJ_G0031079.1 mouse_genomes_project 6 110774350 111009980 - MGP_AJ_P0079299 Srgap3 protein_coding protein_coding MGP_AJ_T0079300.1 MGP_AJ_G0031079.1 mouse_genomes_project 6 110797869 110825766 - MGP_AJ_P0079300 Srgap3 protein_coding nonsense_mediated_decay MGP_AJ_T0079301.1 MGP_AJ_G0031079.1 mouse_genomes_project 6 110825392 111010492 - Srgap3 protein_coding retained_intron MGP_AJ_T0079302.1 MGP_AJ_G0031079.1 mouse_genomes_project 6 110855328 110889935 - Srgap3 protein_coding retained_intron MGP_AJ_T0015298.1 MGP_AJ_G0013393.1 mouse_genomes_project 6 34383313 34384280 - processed_pseudogene processed_pseudogene MGP_AJ_T0078722.1 MGP_AJ_G0030956.1 mouse_genomes_project 6 85293509 85299665 + MGP_AJ_P0078722 Gkn2 protein_coding protein_coding MGP_AJ_T0079116.1 MGP_AJ_G0031042.1 mouse_genomes_project 6 95236911 95264322 - MGP_AJ_P0079116 Tmf1 protein_coding protein_coding MGP_AJ_T0079117.1 MGP_AJ_G0031042.1 mouse_genomes_project 6 95239214 95264237 - MGP_AJ_P0079117 Tmf1 protein_coding nonsense_mediated_decay MGP_AJ_T0079118.1 MGP_AJ_G0031042.1 mouse_genomes_project 6 95244207 95254019 - Tmf1 protein_coding processed_transcript MGP_AJ_T0015300.1 MGP_AJ_G0013395.1 mouse_genomes_project 6 34988987 34989411 + processed_pseudogene processed_pseudogene MGP_AJ_T0015517.1 MGP_AJ_G0013612.1 mouse_genomes_project 6 101645632 101646590 - processed_pseudogene processed_pseudogene MGP_AJ_T0098715.1 MGP_AJ_G0036699.1 mouse_genomes_project 6 131268172 131268293 + n-R5s167 rRNA rRNA MGP_AJ_T0079774.1 MGP_AJ_G0031163.1 mouse_genomes_project 6 117554495 117570167 - MGP_AJ_P0079774 Wnt5b protein_coding protein_coding MGP_AJ_T0079775.1 MGP_AJ_G0031163.1 mouse_genomes_project 6 117554504 117667051 - MGP_AJ_P0079775 Wnt5b protein_coding protein_coding MGP_AJ_T0002129.1 MGP_AJ_G0002042.1 mouse_genomes_project 6 116014842 116016736 - TEC TEC MGP_AJ_T0002130.1 MGP_AJ_G0002042.1 mouse_genomes_project 6 116016086 116016737 - TEC TEC MGP_AJ_T0015323.1 MGP_AJ_G0013418.1 mouse_genomes_project 6 43373041 43374032 - processed_pseudogene processed_pseudogene MGP_AJ_T0002031.1 MGP_AJ_G0001944.1 mouse_genomes_project 6 78064126 78065882 + TEC TEC MGP_AJ_T0015537.1 MGP_AJ_G0013632.1 mouse_genomes_project 6 111043113 111043284 + processed_pseudogene processed_pseudogene MGP_AJ_T0079932.1 MGP_AJ_G0031188.1 mouse_genomes_project 6 119796912 119799924 + MGP_AJ_P0079932 A2m protein_coding protein_coding MGP_AJ_T0079933.1 MGP_AJ_G0031188.1 mouse_genomes_project 6 119797764 119836547 + MGP_AJ_P0079933 A2m protein_coding protein_coding MGP_AJ_T0079934.1 MGP_AJ_G0031188.1 mouse_genomes_project 6 119816167 119818746 + A2m protein_coding retained_intron MGP_AJ_T0101344.1 MGP_AJ_G0039310.1 mouse_genomes_project 6 53431434 53431566 - Gm24709 snoRNA snoRNA MGP_AJ_T0076529.1 MGP_AJ_G0030454.1 mouse_genomes_project 6 18634442 18660808 + MGP_AJ_P0076529 Ing3 protein_coding protein_coding MGP_AJ_T0076530.1 MGP_AJ_G0030454.1 mouse_genomes_project 6 18634519 18659300 + Ing3 protein_coding retained_intron MGP_AJ_T0076531.1 MGP_AJ_G0030454.1 mouse_genomes_project 6 18634524 18658901 + MGP_AJ_P0076531 Ing3 protein_coding nonsense_mediated_decay MGP_AJ_T0076532.1 MGP_AJ_G0030454.1 mouse_genomes_project 6 18634527 18659673 + MGP_AJ_P0076532 Ing3 protein_coding protein_coding MGP_AJ_T0076533.1 MGP_AJ_G0030454.1 mouse_genomes_project 6 18634540 18654834 + MGP_AJ_P0076533 Ing3 protein_coding protein_coding MGP_AJ_T0076534.1 MGP_AJ_G0030454.1 mouse_genomes_project 6 18634555 18658496 + MGP_AJ_P0076534 Ing3 protein_coding nonsense_mediated_decay MGP_AJ_T0076535.1 MGP_AJ_G0030454.1 mouse_genomes_project 6 18634890 18652452 + MGP_AJ_P0076535 Ing3 protein_coding protein_coding MGP_AJ_T0076536.1 MGP_AJ_G0030454.1 mouse_genomes_project 6 18636927 18639127 + Ing3 protein_coding retained_intron MGP_AJ_T0078338.1 MGP_AJ_G0030886.1 mouse_genomes_project 6 80892955 80899552 + MGP_AJ_P0078338 protein_coding protein_coding MGP_AJ_T0078340.1 MGP_AJ_G0030886.1 mouse_genomes_project 6 80893012 80895209 + protein_coding retained_intron MGP_AJ_T0078341.1 MGP_AJ_G0030886.1 mouse_genomes_project 6 80898258 80898992 + protein_coding retained_intron MGP_AJ_T0080611.1 MGP_AJ_G0031358.1 mouse_genomes_project 6 131377097 131378015 - MGP_AJ_P0080611 Tas2r121 protein_coding protein_coding MGP_AJ_T0010809.1 MGP_AJ_G0008931.1 mouse_genomes_project 6 123580674 123580737 + Mir7045 miRNA miRNA MGP_AJ_T0100128.1 MGP_AJ_G0038094.1 mouse_genomes_project 6 135258505 135258590 + Gm25882 snRNA snRNA MGP_AJ_T0076316.1 MGP_AJ_G0030416.1 mouse_genomes_project 6 4319285 4327386 + MGP_AJ_P0076316 Tac1 protein_coding protein_coding MGP_AJ_T0076317.1 MGP_AJ_G0030416.1 mouse_genomes_project 6 4319356 4327391 + MGP_AJ_P0076317 Tac1 protein_coding protein_coding MGP_AJ_T0076318.1 MGP_AJ_G0030416.1 mouse_genomes_project 6 4319480 4327385 + MGP_AJ_P0076318 Tac1 protein_coding protein_coding MGP_AJ_T0076319.1 MGP_AJ_G0030416.1 mouse_genomes_project 6 4326776 4330242 + Tac1 protein_coding processed_transcript MGP_AJ_T0080475.1 MGP_AJ_G0031305.1 mouse_genomes_project 6 127270321 127272285 - Klrb1 protein_coding processed_transcript MGP_AJ_T0080476.1 MGP_AJ_G0031305.1 mouse_genomes_project 6 127270935 127288807 - MGP_AJ_P0080476 Klrb1 protein_coding protein_coding MGP_AJ_T0002008.1 MGP_AJ_G0001921.1 mouse_genomes_project 6 69824033 69826646 + TEC TEC MGP_AJ_T0001928.1 MGP_AJ_G0001841.1 mouse_genomes_project 6 15082793 15084428 - TEC TEC MGP_AJ_T0002139.1 MGP_AJ_G0002051.1 mouse_genomes_project 6 125057612 125058142 - TEC TEC MGP_AJ_T0004964.1 MGP_AJ_G0004257.1 mouse_genomes_project 6 56064692 56072053 + Gm45060 antisense antisense MGP_AJ_T0076817.1 MGP_AJ_G0030510.1 mouse_genomes_project 6 27146370 27177940 - MGP_AJ_P0076817 Tmem209 protein_coding nonsense_mediated_decay MGP_AJ_T0076818.1 MGP_AJ_G0030510.1 mouse_genomes_project 6 27148114 27177951 - MGP_AJ_P0076818 Tmem209 protein_coding protein_coding MGP_AJ_T0076819.1 MGP_AJ_G0030510.1 mouse_genomes_project 6 27148339 27177952 - MGP_AJ_P0076819 Tmem209 protein_coding nonsense_mediated_decay MGP_AJ_T0076820.1 MGP_AJ_G0030510.1 mouse_genomes_project 6 27148545 27178019 - MGP_AJ_P0076820 Tmem209 protein_coding protein_coding MGP_AJ_T0076821.1 MGP_AJ_G0030510.1 mouse_genomes_project 6 27149732 27177954 - MGP_AJ_P0076821 Tmem209 protein_coding protein_coding MGP_AJ_T0076822.1 MGP_AJ_G0030510.1 mouse_genomes_project 6 27150118 27177951 - MGP_AJ_P0076822 Tmem209 protein_coding protein_coding MGP_AJ_T0076823.1 MGP_AJ_G0030510.1 mouse_genomes_project 6 27157673 27159497 - Tmem209 protein_coding retained_intron MGP_AJ_T0076824.1 MGP_AJ_G0030510.1 mouse_genomes_project 6 27169320 27177985 - MGP_AJ_P0076824 Tmem209 protein_coding protein_coding MGP_AJ_T0076825.1 MGP_AJ_G0030510.1 mouse_genomes_project 6 27172984 27177958 - Tmem209 protein_coding retained_intron MGP_AJ_T0076826.1 MGP_AJ_G0030510.1 mouse_genomes_project 6 27173987 27177960 - MGP_AJ_P0076826 Tmem209 protein_coding protein_coding MGP_AJ_T0002151.1 MGP_AJ_G0002063.1 mouse_genomes_project 6 128115029 128115720 + TEC TEC MGP_AJ_T0015312.1 MGP_AJ_G0013407.1 mouse_genomes_project 6 38258669 38259045 + processed_pseudogene processed_pseudogene MGP_AJ_T0008674.1 MGP_AJ_G0007010.1 mouse_genomes_project 6 87094453 87101556 + Gm1965 lincRNA lincRNA MGP_AJ_T0008675.1 MGP_AJ_G0007010.1 mouse_genomes_project 6 87094464 87101539 + Gm1965 lincRNA lincRNA MGP_AJ_T0008676.1 MGP_AJ_G0007010.1 mouse_genomes_project 6 87094464 87100191 + Gm1965 lincRNA lincRNA MGP_AJ_T0008677.1 MGP_AJ_G0007010.1 mouse_genomes_project 6 87094464 87101574 + Gm1965 lincRNA lincRNA MGP_AJ_T0015361.1 MGP_AJ_G0013456.1 mouse_genomes_project 6 55483966 55484130 - processed_pseudogene processed_pseudogene MGP_AJ_T0078147.1 MGP_AJ_G0030845.1 mouse_genomes_project 6 70107314 70113759 - MGP_AJ_P0078147 Vamp8 protein_coding protein_coding MGP_AJ_T0078148.1 MGP_AJ_G0030845.1 mouse_genomes_project 6 70107319 70112967 - MGP_AJ_P0078148 Vamp8 protein_coding protein_coding MGP_AJ_T0015416.1 MGP_AJ_G0013511.1 mouse_genomes_project 6 64913582 64913746 - processed_pseudogene processed_pseudogene MGP_AJ_T0001920.1 MGP_AJ_G0001833.1 mouse_genomes_project 6 9599587 9600533 + TEC TEC MGP_AJ_T0080440.1 MGP_AJ_G0031297.1 mouse_genomes_project 6 126952232 126969612 - MGP_AJ_P0080440 Itfg2 protein_coding protein_coding MGP_AJ_T0080441.1 MGP_AJ_G0031297.1 mouse_genomes_project 6 126952286 126953163 - MGP_AJ_P0080441 Itfg2 protein_coding protein_coding MGP_AJ_T0080442.1 MGP_AJ_G0031297.1 mouse_genomes_project 6 126952321 126969599 - MGP_AJ_P0080442 Itfg2 protein_coding protein_coding MGP_AJ_T0080443.1 MGP_AJ_G0031297.1 mouse_genomes_project 6 126952994 126969550 - MGP_AJ_P0080443 Itfg2 protein_coding protein_coding MGP_AJ_T0080444.1 MGP_AJ_G0031297.1 mouse_genomes_project 6 126953040 126953468 - Itfg2 protein_coding retained_intron MGP_AJ_T0080445.1 MGP_AJ_G0031297.1 mouse_genomes_project 6 126954368 126957150 - Itfg2 protein_coding retained_intron MGP_AJ_T0080446.1 MGP_AJ_G0031297.1 mouse_genomes_project 6 126955789 126969593 - MGP_AJ_P0080446 Itfg2 protein_coding nonsense_mediated_decay MGP_AJ_T0080447.1 MGP_AJ_G0031297.1 mouse_genomes_project 6 126956422 126969594 - MGP_AJ_P0080447 Itfg2 protein_coding nonsense_mediated_decay MGP_AJ_T0080448.1 MGP_AJ_G0031297.1 mouse_genomes_project 6 126958404 126969611 - Itfg2 protein_coding retained_intron MGP_AJ_T0080449.1 MGP_AJ_G0031297.1 mouse_genomes_project 6 126967180 126969599 - Itfg2 protein_coding retained_intron MGP_AJ_T0018286.1 MGP_AJ_G0015616.1 mouse_genomes_project 6 64196337 64249088 + A430010J10Rik processed_transcript lincRNA MGP_AJ_T0018287.1 MGP_AJ_G0015616.1 mouse_genomes_project 6 64196341 64197699 + A430010J10Rik processed_transcript retained_intron MGP_AJ_T0018288.1 MGP_AJ_G0015616.1 mouse_genomes_project 6 64245586 64248772 + A430010J10Rik processed_transcript retained_intron MGP_AJ_T0018289.1 MGP_AJ_G0015616.1 mouse_genomes_project 6 64245865 64246278 + A430010J10Rik processed_transcript pseudogene MGP_AJ_T0000274.1 MGP_AJ_G0000218.1 mouse_genomes_project 6 65044189 65044656 + IG_V_pseudogene IG_V_pseudogene MGP_AJ_T0015325.1 MGP_AJ_G0013420.1 mouse_genomes_project 6 44337537 44337727 + processed_pseudogene processed_pseudogene MGP_AJ_T0008737.1 MGP_AJ_G0007060.1 mouse_genomes_project 6 124788081 124831568 - Gm10415 lincRNA lincRNA MGP_AJ_T0078918.1 MGP_AJ_G0031000.1 mouse_genomes_project 6 88252211 88253333 - MGP_AJ_P0078918 Vmn1r53 protein_coding protein_coding MGP_AJ_T0015452.1 MGP_AJ_G0013547.1 mouse_genomes_project 6 76806774 76807483 + processed_pseudogene processed_pseudogene MGP_AJ_T0015393.1 MGP_AJ_G0013488.1 mouse_genomes_project 6 62829466 62829853 + processed_pseudogene processed_pseudogene MGP_AJ_T0079422.1 MGP_AJ_G0031097.1 mouse_genomes_project 6 111570682 111578927 - MGP_AJ_P0079422 Prrt3 protein_coding protein_coding MGP_AJ_T0079423.1 MGP_AJ_G0031097.1 mouse_genomes_project 6 111570968 111578975 - MGP_AJ_P0079423 Prrt3 protein_coding protein_coding MGP_AJ_T0079424.1 MGP_AJ_G0031097.1 mouse_genomes_project 6 111571138 111578862 - MGP_AJ_P0079424 Prrt3 protein_coding protein_coding MGP_AJ_T0079425.1 MGP_AJ_G0031097.1 mouse_genomes_project 6 111573311 111578931 - MGP_AJ_P0079425 Prrt3 protein_coding protein_coding MGP_AJ_T0079426.1 MGP_AJ_G0031097.1 mouse_genomes_project 6 111573343 111578937 - MGP_AJ_P0079426 Prrt3 protein_coding protein_coding MGP_AJ_T0077799.1 MGP_AJ_G0030749.1 mouse_genomes_project 6 53570202 53571616 + Avl9 protein_coding retained_intron MGP_AJ_T0077800.1 MGP_AJ_G0030749.1 mouse_genomes_project 6 53570230 53615762 + MGP_AJ_P0077800 Avl9 protein_coding protein_coding MGP_AJ_T0077801.1 MGP_AJ_G0030749.1 mouse_genomes_project 6 53570241 53594121 + MGP_AJ_P0077801 Avl9 protein_coding protein_coding MGP_AJ_T0077802.1 MGP_AJ_G0030749.1 mouse_genomes_project 6 53570245 53585215 + MGP_AJ_P0077802 Avl9 protein_coding nonsense_mediated_decay MGP_AJ_T0077803.1 MGP_AJ_G0030749.1 mouse_genomes_project 6 53597876 53607902 + Avl9 protein_coding retained_intron MGP_AJ_T0002106.1 MGP_AJ_G0002019.1 mouse_genomes_project 6 99449594 99450482 - TEC TEC MGP_AJ_T0002056.1 MGP_AJ_G0001969.1 mouse_genomes_project 6 85240352 85241134 - TEC TEC MGP_AJ_T0080632.1 MGP_AJ_G0031377.1 mouse_genomes_project 6 132697190 132701122 - MGP_AJ_P0080632 Kap protein_coding protein_coding MGP_AJ_T0080633.1 MGP_AJ_G0031377.1 mouse_genomes_project 6 132697293 132701033 - MGP_AJ_P0080633 Kap protein_coding protein_coding MGP_AJ_T0001995.1 MGP_AJ_G0001908.1 mouse_genomes_project 6 54754109 54756836 + TEC TEC MGP_AJ_T0001908.1 MGP_AJ_G0001821.1 mouse_genomes_project 6 1312665 1315487 - TEC TEC MGP_AJ_T0002686.1 MGP_AJ_G0002565.1 mouse_genomes_project 6 37981440 37981929 + MGP_AJ_P0002686 Trbv26 TR_V_gene TR_V_gene MGP_AJ_T0002687.1 MGP_AJ_G0002565.1 mouse_genomes_project 6 37981460 37981929 + MGP_AJ_P0002687 Trbv26 TR_V_gene TR_V_gene MGP_AJ_T0077231.1 MGP_AJ_G0030601.1 mouse_genomes_project 6 38190439 38204654 - MGP_AJ_P0077231 protein_coding protein_coding MGP_AJ_T0004930.1 MGP_AJ_G0004232.1 mouse_genomes_project 6 35634630 35703560 - Gm42962 antisense antisense MGP_AJ_T0005118.1 MGP_AJ_G0004366.1 mouse_genomes_project 6 143758603 143797399 + Sox5os4 antisense antisense MGP_AJ_T0079972.1 MGP_AJ_G0031197.1 mouse_genomes_project 6 120893440 120903828 + MGP_AJ_P0079972 Aicda protein_coding protein_coding MGP_AJ_T0079973.1 MGP_AJ_G0031197.1 mouse_genomes_project 6 120900117 120902724 + MGP_AJ_P0079973 Aicda protein_coding protein_coding MGP_AJ_T0008669.1 MGP_AJ_G0007005.1 mouse_genomes_project 6 84639985 84643596 + Gm44036 lincRNA lincRNA MGP_AJ_T0080814.1 MGP_AJ_G0031414.1 mouse_genomes_project 6 136939420 136991390 - MGP_AJ_P0080814 Slc15a5 protein_coding protein_coding MGP_AJ_T0080815.1 MGP_AJ_G0031414.1 mouse_genomes_project 6 136939424 137021817 - Slc15a5 protein_coding retained_intron MGP_AJ_T0080816.1 MGP_AJ_G0031414.1 mouse_genomes_project 6 136939424 137028604 - MGP_AJ_P0080816 Slc15a5 protein_coding protein_coding MGP_AJ_T0080817.1 MGP_AJ_G0031414.1 mouse_genomes_project 6 136973156 136984882 - MGP_AJ_P0080817 Slc15a5 protein_coding protein_coding MGP_AJ_T0080818.1 MGP_AJ_G0031414.1 mouse_genomes_project 6 136981260 136991460 - MGP_AJ_P0080818 Slc15a5 protein_coding protein_coding MGP_AJ_T0080819.1 MGP_AJ_G0031414.1 mouse_genomes_project 6 136985055 137003760 - Slc15a5 protein_coding retained_intron MGP_AJ_T0077259.1 MGP_AJ_G0030613.1 mouse_genomes_project 6 38783896 38788346 + MGP_AJ_P0077259 Sva protein_coding protein_coding MGP_AJ_T0077260.1 MGP_AJ_G0030613.1 mouse_genomes_project 6 38783896 38788352 + MGP_AJ_P0077260 Sva protein_coding protein_coding MGP_AJ_T0008583.1 MGP_AJ_G0006936.1 mouse_genomes_project 6 35264591 35267068 - Gm26699 lincRNA lincRNA MGP_AJ_T0078187.1 MGP_AJ_G0030851.1 mouse_genomes_project 6 70327091 70337042 + MGP_AJ_P0078187 Retsat protein_coding protein_coding MGP_AJ_T0078188.1 MGP_AJ_G0030851.1 mouse_genomes_project 6 70327244 70335998 + MGP_AJ_P0078188 Retsat protein_coding protein_coding MGP_AJ_T0078189.1 MGP_AJ_G0030851.1 mouse_genomes_project 6 70327244 70335998 + MGP_AJ_P0078189 Retsat protein_coding protein_coding MGP_AJ_T0078190.1 MGP_AJ_G0030851.1 mouse_genomes_project 6 70332989 70335006 + Retsat protein_coding processed_transcript MGP_AJ_T0078191.1 MGP_AJ_G0030851.1 mouse_genomes_project 6 70334588 70336059 + MGP_AJ_P0078191 Retsat protein_coding protein_coding MGP_AJ_T0078192.1 MGP_AJ_G0030851.1 mouse_genomes_project 6 70335261 70335828 + MGP_AJ_P0078192 Retsat protein_coding protein_coding MGP_AJ_T0102683.1 MGP_AJ_G0040425.1 mouse_genomes_project 6 54193551 54194440 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0010799.1 MGP_AJ_G0008921.1 mouse_genomes_project 6 114762036 114762106 - Mir7043 miRNA miRNA MGP_AJ_T0081084.1 MGP_AJ_G0031462.1 mouse_genomes_project 6 145601196 145616918 + MGP_AJ_P0081084 Fgfr1op2 protein_coding protein_coding MGP_AJ_T0081085.1 MGP_AJ_G0031462.1 mouse_genomes_project 6 145601865 145623167 + MGP_AJ_P0081085 Fgfr1op2 protein_coding protein_coding MGP_AJ_T0081086.1 MGP_AJ_G0031462.1 mouse_genomes_project 6 145601865 145623167 + MGP_AJ_P0081086 Fgfr1op2 protein_coding protein_coding MGP_AJ_T0081087.1 MGP_AJ_G0031462.1 mouse_genomes_project 6 145601927 145616918 + MGP_AJ_P0081087 Fgfr1op2 protein_coding protein_coding MGP_AJ_T0081088.1 MGP_AJ_G0031462.1 mouse_genomes_project 6 145601946 145614038 + Fgfr1op2 protein_coding processed_transcript MGP_AJ_T0081089.1 MGP_AJ_G0031462.1 mouse_genomes_project 6 145601948 145611332 + Fgfr1op2 protein_coding retained_intron MGP_AJ_T0081090.1 MGP_AJ_G0031462.1 mouse_genomes_project 6 145612341 145621299 + Fgfr1op2 protein_coding processed_transcript MGP_AJ_T0077233.1 MGP_AJ_G0030603.1 mouse_genomes_project 6 38374543 38389571 + MGP_AJ_P0077233 Ephb6 protein_coding protein_coding MGP_AJ_T0077234.1 MGP_AJ_G0030603.1 mouse_genomes_project 6 38382359 38383673 + Ephb6 protein_coding processed_transcript MGP_AJ_T0077235.1 MGP_AJ_G0030603.1 mouse_genomes_project 6 38383753 38385819 + MGP_AJ_P0077235 Ephb6 protein_coding nonsense_mediated_decay MGP_AJ_T0077236.1 MGP_AJ_G0030603.1 mouse_genomes_project 6 38389004 38389569 + MGP_AJ_P0077236 Ephb6 protein_coding protein_coding MGP_AJ_T0102707.1 MGP_AJ_G0040449.1 mouse_genomes_project 6 88061835 88062007 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0077533.1 MGP_AJ_G0030689.1 mouse_genomes_project 6 45779685 45784547 + MGP_AJ_P0077533 Svs1 protein_coding protein_coding MGP_AJ_T0010807.1 MGP_AJ_G0008929.1 mouse_genomes_project 6 123208147 123208219 - Mir141 miRNA miRNA MGP_AJ_T0015424.1 MGP_AJ_G0013519.1 mouse_genomes_project 6 65684074 65685585 - processed_pseudogene processed_pseudogene MGP_AJ_T0011668.1 MGP_AJ_G0009790.1 mouse_genomes_project 6 120634619 120634868 - Gm27826 misc_RNA misc_RNA MGP_AJ_T0002727.1 MGP_AJ_G0002599.1 mouse_genomes_project 6 37845781 37846070 + TR_V_pseudogene TR_V_pseudogene MGP_AJ_T0010766.1 MGP_AJ_G0008888.1 mouse_genomes_project 6 48452982 48453059 + Gm22914 miRNA miRNA MGP_AJ_T0076368.1 MGP_AJ_G0030428.1 mouse_genomes_project 6 8580257 8605855 + MGP_AJ_P0076368 Phf14 protein_coding protein_coding MGP_AJ_T0076369.1 MGP_AJ_G0030428.1 mouse_genomes_project 6 8580332 8625674 + MGP_AJ_P0076369 Phf14 protein_coding nonsense_mediated_decay MGP_AJ_T0076370.1 MGP_AJ_G0030428.1 mouse_genomes_project 6 8598314 8706936 + MGP_AJ_P0076370 Phf14 protein_coding unknown_likely_coding MGP_AJ_T0076371.1 MGP_AJ_G0030428.1 mouse_genomes_project 6 8598325 8675399 + MGP_AJ_P0076371 Phf14 protein_coding protein_coding MGP_AJ_T0076372.1 MGP_AJ_G0030428.1 mouse_genomes_project 6 8598359 8675467 + MGP_AJ_P0076372 Phf14 protein_coding protein_coding MGP_AJ_T0076373.1 MGP_AJ_G0030428.1 mouse_genomes_project 6 8598360 8753069 + MGP_AJ_P0076373 Phf14 protein_coding protein_coding MGP_AJ_T0076374.1 MGP_AJ_G0030428.1 mouse_genomes_project 6 8599227 8653846 + MGP_AJ_P0076374 Phf14 protein_coding protein_coding MGP_AJ_T0076375.1 MGP_AJ_G0030428.1 mouse_genomes_project 6 8654451 8656043 + Phf14 protein_coding retained_intron MGP_AJ_T0076376.1 MGP_AJ_G0030428.1 mouse_genomes_project 6 8658259 8662697 + Phf14 protein_coding retained_intron MGP_AJ_T0076377.1 MGP_AJ_G0030428.1 mouse_genomes_project 6 8674205 8752964 + MGP_AJ_P0076377 Phf14 protein_coding nonsense_mediated_decay MGP_AJ_T0076378.1 MGP_AJ_G0030428.1 mouse_genomes_project 6 8709196 8715098 + Phf14 protein_coding retained_intron MGP_AJ_T0008654.1 MGP_AJ_G0006995.1 mouse_genomes_project 6 80611060 80625304 + Gm43878 lincRNA lincRNA MGP_AJ_T0008655.1 MGP_AJ_G0006995.1 mouse_genomes_project 6 80619559 80625316 + Gm43878 lincRNA lincRNA MGP_AJ_T0008656.1 MGP_AJ_G0006995.1 mouse_genomes_project 6 80619594 80628149 + Gm43878 lincRNA lincRNA MGP_AJ_T0078519.1 MGP_AJ_G0030918.1 mouse_genomes_project 6 83041383 83062832 + MGP_AJ_P0078519 Emx1 protein_coding protein_coding MGP_AJ_T0078520.1 MGP_AJ_G0030918.1 mouse_genomes_project 6 83051956 83062936 + Emx1 protein_coding retained_intron MGP_AJ_T0008639.1 MGP_AJ_G0006981.1 mouse_genomes_project 6 69064058 69084309 + Gm44174 lincRNA lincRNA MGP_AJ_T0102706.1 MGP_AJ_G0040448.1 mouse_genomes_project 6 88061618 88061856 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0015558.1 MGP_AJ_G0013653.1 mouse_genomes_project 6 115568991 115569412 - processed_pseudogene processed_pseudogene MGP_AJ_T0079749.1 MGP_AJ_G0031159.1 mouse_genomes_project 6 117297845 117342152 + MGP_AJ_P0079749 Dcp1b protein_coding protein_coding MGP_AJ_T0079750.1 MGP_AJ_G0031159.1 mouse_genomes_project 6 117297880 117340719 + MGP_AJ_P0079750 Dcp1b protein_coding protein_coding MGP_AJ_T0079751.1 MGP_AJ_G0031159.1 mouse_genomes_project 6 117315481 117340740 + Dcp1b protein_coding retained_intron MGP_AJ_T0079752.1 MGP_AJ_G0031159.1 mouse_genomes_project 6 117323570 117335389 + Dcp1b protein_coding retained_intron MGP_AJ_T0079753.1 MGP_AJ_G0031159.1 mouse_genomes_project 6 117338077 117342150 + Dcp1b protein_coding retained_intron MGP_AJ_T0076688.1 MGP_AJ_G0030493.1 mouse_genomes_project 6 25989031 26015469 + MGP_AJ_P0076688 Calu protein_coding protein_coding MGP_AJ_T0076689.1 MGP_AJ_G0030493.1 mouse_genomes_project 6 25989031 26015469 + MGP_AJ_P0076689 Calu protein_coding protein_coding MGP_AJ_T0076690.1 MGP_AJ_G0030493.1 mouse_genomes_project 6 25989068 26017641 + MGP_AJ_P0076690 Calu protein_coding protein_coding MGP_AJ_T0076691.1 MGP_AJ_G0030493.1 mouse_genomes_project 6 25989081 26017095 + MGP_AJ_P0076691 Calu protein_coding protein_coding MGP_AJ_T0076692.1 MGP_AJ_G0030493.1 mouse_genomes_project 6 25989087 26017642 + MGP_AJ_P0076692 Calu protein_coding protein_coding MGP_AJ_T0076693.1 MGP_AJ_G0030493.1 mouse_genomes_project 6 25997434 26015991 + MGP_AJ_P0076693 Calu protein_coding nonsense_mediated_decay MGP_AJ_T0076694.1 MGP_AJ_G0030493.1 mouse_genomes_project 6 26002425 26014308 + MGP_AJ_P0076694 Calu protein_coding protein_coding MGP_AJ_T0076695.1 MGP_AJ_G0030493.1 mouse_genomes_project 6 26013512 26018076 + MGP_AJ_P0076695 Calu protein_coding protein_coding MGP_AJ_T0076696.1 MGP_AJ_G0030493.1 mouse_genomes_project 6 26014621 26015997 + Calu protein_coding processed_transcript MGP_AJ_T0077567.1 MGP_AJ_G0030698.1 mouse_genomes_project 6 46907041 46997535 + MGP_AJ_P0077567 Mpp6 protein_coding protein_coding MGP_AJ_T0077568.1 MGP_AJ_G0030698.1 mouse_genomes_project 6 46907049 46997524 + MGP_AJ_P0077568 Mpp6 protein_coding protein_coding MGP_AJ_T0077569.1 MGP_AJ_G0030698.1 mouse_genomes_project 6 46907078 46997876 + MGP_AJ_P0077569 Mpp6 protein_coding protein_coding MGP_AJ_T0077570.1 MGP_AJ_G0030698.1 mouse_genomes_project 6 46907080 46910610 + Mpp6 protein_coding retained_intron MGP_AJ_T0077571.1 MGP_AJ_G0030698.1 mouse_genomes_project 6 46907183 46997361 + MGP_AJ_P0077571 Mpp6 protein_coding protein_coding MGP_AJ_T0077572.1 MGP_AJ_G0030698.1 mouse_genomes_project 6 46907207 46959197 + MGP_AJ_P0077572 Mpp6 protein_coding nonsense_mediated_decay MGP_AJ_T0077573.1 MGP_AJ_G0030698.1 mouse_genomes_project 6 46907660 46979898 + MGP_AJ_P0077573 Mpp6 protein_coding protein_coding MGP_AJ_T0077574.1 MGP_AJ_G0030698.1 mouse_genomes_project 6 46979584 46995847 + Mpp6 protein_coding processed_transcript MGP_AJ_T0077577.1 MGP_AJ_G0030698.1 mouse_genomes_project 6 46993704 46997264 + Mpp6 protein_coding retained_intron MGP_AJ_T0011629.1 MGP_AJ_G0009751.1 mouse_genomes_project 6 14558694 14558831 + Gm27444 misc_RNA misc_RNA MGP_AJ_T0100122.1 MGP_AJ_G0038088.1 mouse_genomes_project 6 127744406 127744469 + Gm26160 snRNA snRNA MGP_AJ_T0078164.1 MGP_AJ_G0030848.1 mouse_genomes_project 6 70240580 70242227 - Sh2d6 protein_coding processed_transcript MGP_AJ_T0078165.1 MGP_AJ_G0030848.1 mouse_genomes_project 6 70240590 70247475 - MGP_AJ_P0078165 Sh2d6 protein_coding protein_coding MGP_AJ_T0078166.1 MGP_AJ_G0030848.1 mouse_genomes_project 6 70240592 70247564 - MGP_AJ_P0078166 Sh2d6 protein_coding protein_coding MGP_AJ_T0078167.1 MGP_AJ_G0030848.1 mouse_genomes_project 6 70240861 70246819 - MGP_AJ_P0078167 Sh2d6 protein_coding protein_coding MGP_AJ_T0078168.1 MGP_AJ_G0030848.1 mouse_genomes_project 6 70242263 70246914 - Sh2d6 protein_coding processed_transcript MGP_AJ_T0078169.1 MGP_AJ_G0030848.1 mouse_genomes_project 6 70244345 70248571 - Sh2d6 protein_coding retained_intron MGP_AJ_T0015302.1 MGP_AJ_G0013397.1 mouse_genomes_project 6 35106565 35106988 + processed_pseudogene processed_pseudogene MGP_AJ_T0079287.1 MGP_AJ_G0031076.1 mouse_genomes_project 6 110522357 110535635 + MGP_AJ_P0079287 Cav3 protein_coding protein_coding MGP_AJ_T0080341.1 MGP_AJ_G0031274.1 mouse_genomes_project 6 125145455 125149854 - MGP_AJ_P0080341 Kcna1 protein_coding protein_coding MGP_AJ_T0080342.1 MGP_AJ_G0031274.1 mouse_genomes_project 6 125146722 125149871 - MGP_AJ_P0080342 Kcna1 protein_coding protein_coding MGP_AJ_T0080343.1 MGP_AJ_G0031274.1 mouse_genomes_project 6 125148832 125151441 - Kcna1 protein_coding processed_transcript MGP_AJ_T0008508.1 MGP_AJ_G0006889.1 mouse_genomes_project 6 3254776 3272836 + Gm20685 lincRNA lincRNA MGP_AJ_T0002071.1 MGP_AJ_G0001984.1 mouse_genomes_project 6 86747219 86751041 + TEC TEC MGP_AJ_T0010748.1 MGP_AJ_G0008870.1 mouse_genomes_project 6 26037291 26037380 + Gm26220 miRNA miRNA MGP_AJ_T0078144.1 MGP_AJ_G0030844.1 mouse_genomes_project 6 70090884 70094226 - MGP_AJ_P0078144 Vamp5 protein_coding protein_coding MGP_AJ_T0078145.1 MGP_AJ_G0030844.1 mouse_genomes_project 6 70091118 70102505 - MGP_AJ_P0078145 Vamp5 protein_coding protein_coding MGP_AJ_T0078146.1 MGP_AJ_G0030844.1 mouse_genomes_project 6 70091124 70102551 - MGP_AJ_P0078146 Vamp5 protein_coding protein_coding MGP_AJ_T0079910.1 MGP_AJ_G0031184.1 mouse_genomes_project 6 119400178 119425721 + MGP_AJ_P0079910 Usp18 protein_coding protein_coding MGP_AJ_T0079911.1 MGP_AJ_G0031184.1 mouse_genomes_project 6 119407861 119409819 + Usp18 protein_coding retained_intron MGP_AJ_T0079912.1 MGP_AJ_G0031184.1 mouse_genomes_project 6 119416313 119418050 + Usp18 protein_coding retained_intron MGP_AJ_T0079913.1 MGP_AJ_G0031184.1 mouse_genomes_project 6 119423376 119424292 + MGP_AJ_P0079913 Usp18 protein_coding protein_coding MGP_AJ_T0015357.1 MGP_AJ_G0013452.1 mouse_genomes_project 6 54524594 54524847 - processed_pseudogene processed_pseudogene MGP_AJ_T0015648.1 MGP_AJ_G0013743.1 mouse_genomes_project 6 134002991 134003897 - processed_pseudogene processed_pseudogene MGP_AJ_T0015573.1 MGP_AJ_G0013668.1 mouse_genomes_project 6 120624714 120625096 + processed_pseudogene processed_pseudogene MGP_AJ_T0015581.1 MGP_AJ_G0013676.1 mouse_genomes_project 6 121474993 121475087 + processed_pseudogene processed_pseudogene MGP_AJ_T0008543.1 MGP_AJ_G0006913.1 mouse_genomes_project 6 27744460 27744864 - Gm27019 lincRNA lincRNA MGP_AJ_T0080836.1 MGP_AJ_G0031417.1 mouse_genomes_project 6 137612773 137614230 - MGP_AJ_P0080836 Igbp1b protein_coding protein_coding MGP_AJ_T0078154.1 MGP_AJ_G0030847.1 mouse_genomes_project 6 70155380 70162140 - MGP_AJ_P0078154 Mat2a protein_coding protein_coding MGP_AJ_T0078155.1 MGP_AJ_G0030847.1 mouse_genomes_project 6 70155380 70162138 - MGP_AJ_P0078155 Mat2a protein_coding protein_coding MGP_AJ_T0078156.1 MGP_AJ_G0030847.1 mouse_genomes_project 6 70155381 70157573 - MGP_AJ_P0078156 Mat2a protein_coding protein_coding MGP_AJ_T0078157.1 MGP_AJ_G0030847.1 mouse_genomes_project 6 70156481 70157658 - MGP_AJ_P0078157 Mat2a protein_coding nonsense_mediated_decay MGP_AJ_T0078158.1 MGP_AJ_G0030847.1 mouse_genomes_project 6 70157126 70162138 - MGP_AJ_P0078158 Mat2a protein_coding protein_coding MGP_AJ_T0078159.1 MGP_AJ_G0030847.1 mouse_genomes_project 6 70158392 70161970 - MGP_AJ_P0078159 Mat2a protein_coding protein_coding MGP_AJ_T0078160.1 MGP_AJ_G0030847.1 mouse_genomes_project 6 70158998 70162122 - Mat2a protein_coding retained_intron MGP_AJ_T0078161.1 MGP_AJ_G0030847.1 mouse_genomes_project 6 70159329 70162125 - Mat2a protein_coding retained_intron MGP_AJ_T0078162.1 MGP_AJ_G0030847.1 mouse_genomes_project 6 70159981 70162130 - Mat2a protein_coding processed_transcript MGP_AJ_T0078163.1 MGP_AJ_G0030847.1 mouse_genomes_project 6 70161383 70162138 - Mat2a protein_coding retained_intron MGP_AJ_T0080376.1 MGP_AJ_G0031283.1 mouse_genomes_project 6 125610593 125631723 - MGP_AJ_P0080376 Tigar protein_coding protein_coding MGP_AJ_T0080377.1 MGP_AJ_G0031283.1 mouse_genomes_project 6 125614140 125631730 - MGP_AJ_P0080377 Tigar protein_coding nonsense_mediated_decay MGP_AJ_T0002134.1 MGP_AJ_G0002046.1 mouse_genomes_project 6 119350674 119352183 - TEC TEC MGP_AJ_T0015674.1 MGP_AJ_G0013769.1 mouse_genomes_project 6 147686012 147686620 - processed_pseudogene processed_pseudogene MGP_AJ_T0078011.1 MGP_AJ_G0030817.1 mouse_genomes_project 6 64625906 64627641 - MGP_AJ_P0078011 Tacstd2 protein_coding protein_coding MGP_AJ_T0015278.1 MGP_AJ_G0013373.1 mouse_genomes_project 6 19472940 19473644 - processed_pseudogene processed_pseudogene MGP_AJ_T0078504.1 MGP_AJ_G0030914.1 mouse_genomes_project 6 82394862 82411466 - MGP_AJ_P0078504 Cyp26b1 protein_coding protein_coding MGP_AJ_T0078505.1 MGP_AJ_G0030914.1 mouse_genomes_project 6 82397689 82411466 - MGP_AJ_P0078505 Cyp26b1 protein_coding protein_coding MGP_AJ_T0015482.1 MGP_AJ_G0013577.1 mouse_genomes_project 6 89497396 89499238 - processed_pseudogene processed_pseudogene MGP_AJ_T0015519.1 MGP_AJ_G0013614.1 mouse_genomes_project 6 102399211 102399663 + processed_pseudogene processed_pseudogene MGP_AJ_T0079659.1 MGP_AJ_G0031143.1 mouse_genomes_project 6 114740077 114745057 - MGP_AJ_P0079659 Zfp422 protein_coding protein_coding MGP_AJ_T0079660.1 MGP_AJ_G0031143.1 mouse_genomes_project 6 114740966 114744759 - MGP_AJ_P0079660 Zfp422 protein_coding protein_coding MGP_AJ_T0079661.1 MGP_AJ_G0031143.1 mouse_genomes_project 6 114740966 114744980 - MGP_AJ_P0079661 Zfp422 protein_coding protein_coding MGP_AJ_T0079662.1 MGP_AJ_G0031143.1 mouse_genomes_project 6 114740984 114742757 - Zfp422 protein_coding processed_transcript MGP_AJ_T0077409.1 MGP_AJ_G0030661.1 mouse_genomes_project 6 44775971 44800432 - MGP_AJ_P0077409 Zfp777 protein_coding protein_coding MGP_AJ_T0077410.1 MGP_AJ_G0030661.1 mouse_genomes_project 6 44775988 44801229 - MGP_AJ_P0077410 Zfp777 protein_coding protein_coding MGP_AJ_T0077411.1 MGP_AJ_G0030661.1 mouse_genomes_project 6 44781048 44796564 - MGP_AJ_P0077411 Zfp777 protein_coding protein_coding MGP_AJ_T0077412.1 MGP_AJ_G0030661.1 mouse_genomes_project 6 44796483 44800432 - MGP_AJ_P0077412 Zfp777 protein_coding protein_coding MGP_AJ_T0077413.1 MGP_AJ_G0030661.1 mouse_genomes_project 6 44796765 44800112 - MGP_AJ_P0077413 Zfp777 protein_coding protein_coding MGP_AJ_T0008629.1 MGP_AJ_G0006972.1 mouse_genomes_project 6 58155728 58160279 - Gm43893 lincRNA lincRNA MGP_AJ_T0015384.1 MGP_AJ_G0013479.1 mouse_genomes_project 6 62232518 62232747 + processed_pseudogene processed_pseudogene MGP_AJ_T0077530.1 MGP_AJ_G0030688.1 mouse_genomes_project 6 45767816 45771600 + MGP_AJ_P0077530 Doxl2 protein_coding protein_coding MGP_AJ_T0077531.1 MGP_AJ_G0030688.1 mouse_genomes_project 6 45767927 45771601 + MGP_AJ_P0077531 Doxl2 protein_coding nonsense_mediated_decay MGP_AJ_T0077532.1 MGP_AJ_G0030688.1 mouse_genomes_project 6 45770088 45771598 + Doxl2 protein_coding retained_intron MGP_AJ_T0015608.1 MGP_AJ_G0013703.1 mouse_genomes_project 6 127200202 127200316 - processed_pseudogene processed_pseudogene MGP_AJ_T0008501.1 MGP_AJ_G0006887.1 mouse_genomes_project 6 3012994 3044751 + Gm20619 lincRNA lincRNA MGP_AJ_T0008502.1 MGP_AJ_G0006887.1 mouse_genomes_project 6 3013022 3130913 + Gm20619 lincRNA lincRNA MGP_AJ_T0008503.1 MGP_AJ_G0006887.1 mouse_genomes_project 6 3013025 3146862 + Gm20619 lincRNA lincRNA MGP_AJ_T0008504.1 MGP_AJ_G0006887.1 mouse_genomes_project 6 3013053 3044747 + Gm20619 lincRNA lincRNA MGP_AJ_T0008505.1 MGP_AJ_G0006887.1 mouse_genomes_project 6 3063828 3130708 + Gm20619 lincRNA lincRNA MGP_AJ_T0079909.1 MGP_AJ_G0031183.1 mouse_genomes_project 6 119364601 119381116 + MGP_AJ_P0079909 Tuba8 protein_coding protein_coding MGP_AJ_T0015285.1 MGP_AJ_G0013380.1 mouse_genomes_project 6 24982931 24984299 - processed_pseudogene processed_pseudogene MGP_AJ_T0077823.1 MGP_AJ_G0030755.1 mouse_genomes_project 6 53855931 53856995 + MGP_AJ_P0077823 Vmn1r6 protein_coding protein_coding MGP_AJ_T0081095.1 MGP_AJ_G0031464.1 mouse_genomes_project 6 145667394 145674977 + Med21 protein_coding processed_transcript MGP_AJ_T0081096.1 MGP_AJ_G0031464.1 mouse_genomes_project 6 145667394 145674977 + MGP_AJ_P0081096 Med21 protein_coding protein_coding MGP_AJ_T0081097.1 MGP_AJ_G0031464.1 mouse_genomes_project 6 145667427 145673908 + MGP_AJ_P0081097 Med21 protein_coding protein_coding MGP_AJ_T0081098.1 MGP_AJ_G0031464.1 mouse_genomes_project 6 145667428 145674977 + Med21 protein_coding processed_transcript MGP_AJ_T0081099.1 MGP_AJ_G0031464.1 mouse_genomes_project 6 145667438 145675107 + MGP_AJ_P0081099 Med21 protein_coding nonsense_mediated_decay MGP_AJ_T0081100.1 MGP_AJ_G0031464.1 mouse_genomes_project 6 145671755 145674977 + Med21 protein_coding retained_intron MGP_AJ_T0015250.1 MGP_AJ_G0013345.1 mouse_genomes_project 6 9545643 9546629 + processed_pseudogene processed_pseudogene MGP_AJ_T0077804.1 MGP_AJ_G0030750.1 mouse_genomes_project 6 53631018 53651231 - MGP_AJ_P0077804 Kbtbd2 protein_coding protein_coding MGP_AJ_T0077805.1 MGP_AJ_G0030750.1 mouse_genomes_project 6 53631019 53651308 - MGP_AJ_P0077805 Kbtbd2 protein_coding protein_coding MGP_AJ_T0077806.1 MGP_AJ_G0030750.1 mouse_genomes_project 6 53642872 53650774 - MGP_AJ_P0077806 Kbtbd2 protein_coding protein_coding MGP_AJ_T0077807.1 MGP_AJ_G0030750.1 mouse_genomes_project 6 53643017 53650242 - Kbtbd2 protein_coding processed_transcript MGP_AJ_T0078654.1 MGP_AJ_G0030943.1 mouse_genomes_project 6 84339926 84373134 + MGP_AJ_P0078654 C87436 protein_coding protein_coding MGP_AJ_T0078655.1 MGP_AJ_G0030943.1 mouse_genomes_project 6 84339941 84347758 + MGP_AJ_P0078655 C87436 protein_coding protein_coding MGP_AJ_T0078656.1 MGP_AJ_G0030943.1 mouse_genomes_project 6 84340244 84373134 + MGP_AJ_P0078656 C87436 protein_coding protein_coding MGP_AJ_T0078657.1 MGP_AJ_G0030943.1 mouse_genomes_project 6 84340244 84373134 + MGP_AJ_P0078657 C87436 protein_coding nonsense_mediated_decay MGP_AJ_T0078658.1 MGP_AJ_G0030943.1 mouse_genomes_project 6 84340260 84341040 + C87436 protein_coding processed_transcript MGP_AJ_T0078659.1 MGP_AJ_G0030943.1 mouse_genomes_project 6 84340279 84373134 + MGP_AJ_P0078659 C87436 protein_coding protein_coding MGP_AJ_T0078660.1 MGP_AJ_G0030943.1 mouse_genomes_project 6 84345956 84376249 + MGP_AJ_P0078660 C87436 protein_coding nonsense_mediated_decay MGP_AJ_T0078661.1 MGP_AJ_G0030943.1 mouse_genomes_project 6 84366791 84372693 + C87436 protein_coding processed_transcript MGP_AJ_T0078921.1 MGP_AJ_G0031002.1 mouse_genomes_project 6 88349050 88363056 - MGP_AJ_P0078921 Chst13 protein_coding protein_coding MGP_AJ_T0015314.1 MGP_AJ_G0013409.1 mouse_genomes_project 6 39459489 39459921 + processed_pseudogene processed_pseudogene MGP_AJ_T0002160.1 MGP_AJ_G0002072.1 mouse_genomes_project 6 135470202 135472593 + TEC TEC MGP_AJ_T0101326.1 MGP_AJ_G0039292.1 mouse_genomes_project 6 17680277 17680408 - Gm23960 snoRNA snoRNA MGP_AJ_T0015397.1 MGP_AJ_G0013492.1 mouse_genomes_project 6 63327313 63330823 + processed_pseudogene processed_pseudogene MGP_AJ_T0008642.1 MGP_AJ_G0006984.1 mouse_genomes_project 6 69737229 69759192 - 9130221F21Rik lincRNA lincRNA MGP_AJ_T0002162.1 MGP_AJ_G0002074.1 mouse_genomes_project 6 135877656 135878464 + TEC TEC MGP_AJ_T0078912.1 MGP_AJ_G0030996.1 mouse_genomes_project 6 88017170 88022356 + MGP_AJ_P0078912 protein_coding protein_coding MGP_AJ_T0008538.1 MGP_AJ_G0006910.1 mouse_genomes_project 6 26965936 26994604 + 1700095J07Rik lincRNA lincRNA MGP_AJ_T0008539.1 MGP_AJ_G0006910.1 mouse_genomes_project 6 26965952 26969100 + 1700095J07Rik lincRNA lincRNA MGP_AJ_T0076658.1 MGP_AJ_G0030486.1 mouse_genomes_project 6 25688255 25701889 + MGP_AJ_P0076658 Lep protein_coding protein_coding MGP_AJ_T0076659.1 MGP_AJ_G0030486.1 mouse_genomes_project 6 25693490 25699001 + MGP_AJ_P0076659 Lep protein_coding protein_coding MGP_AJ_T0015402.1 MGP_AJ_G0013497.1 mouse_genomes_project 6 63658753 63659513 + processed_pseudogene processed_pseudogene MGP_AJ_T0015305.1 MGP_AJ_G0013400.1 mouse_genomes_project 6 36581484 36582568 - processed_pseudogene processed_pseudogene MGP_AJ_T0079217.1 MGP_AJ_G0031062.1 mouse_genomes_project 6 103744952 103906668 + Cntn4 protein_coding processed_transcript MGP_AJ_T0079218.1 MGP_AJ_G0031062.1 mouse_genomes_project 6 103745037 104740593 + MGP_AJ_P0079218 Cntn4 protein_coding protein_coding MGP_AJ_T0079219.1 MGP_AJ_G0031062.1 mouse_genomes_project 6 103745037 104765460 + MGP_AJ_P0079219 Cntn4 protein_coding protein_coding MGP_AJ_T0079220.1 MGP_AJ_G0031062.1 mouse_genomes_project 6 103745067 104765465 + MGP_AJ_P0079220 Cntn4 protein_coding protein_coding MGP_AJ_T0079221.1 MGP_AJ_G0031062.1 mouse_genomes_project 6 103991815 104740599 + MGP_AJ_P0079221 Cntn4 protein_coding protein_coding MGP_AJ_T0079222.1 MGP_AJ_G0031062.1 mouse_genomes_project 6 104186336 104679663 + MGP_AJ_P0079222 Cntn4 protein_coding protein_coding MGP_AJ_T0079223.1 MGP_AJ_G0031062.1 mouse_genomes_project 6 104186489 104585037 + Cntn4 protein_coding processed_transcript MGP_AJ_T0079224.1 MGP_AJ_G0031062.1 mouse_genomes_project 6 104186577 104739816 + MGP_AJ_P0079224 Cntn4 protein_coding protein_coding MGP_AJ_T0079225.1 MGP_AJ_G0031062.1 mouse_genomes_project 6 104186626 104414233 + Cntn4 protein_coding processed_transcript MGP_AJ_T0079226.1 MGP_AJ_G0031062.1 mouse_genomes_project 6 104573115 104763913 + Cntn4 protein_coding processed_transcript MGP_AJ_T0079227.1 MGP_AJ_G0031062.1 mouse_genomes_project 6 104721401 104765347 + Cntn4 protein_coding processed_transcript MGP_AJ_T0079228.1 MGP_AJ_G0031062.1 mouse_genomes_project 6 104745541 104746515 + Cntn4 protein_coding retained_intron MGP_AJ_T0079229.1 MGP_AJ_G0031062.1 mouse_genomes_project 6 104759303 104764057 + Cntn4 protein_coding processed_transcript MGP_AJ_T0077593.1 MGP_AJ_G0030701.1 mouse_genomes_project 6 47374279 47397611 - MGP_AJ_P0077593 4921507P07Rik protein_coding protein_coding MGP_AJ_T0011661.1 MGP_AJ_G0009783.1 mouse_genomes_project 6 97663284 97663531 + Gm24936 misc_RNA misc_RNA MGP_AJ_T0005123.1 MGP_AJ_G0004371.1 mouse_genomes_project 6 144495480 144497777 + Gm15499 antisense antisense MGP_AJ_T0004918.1 MGP_AJ_G0004222.1 mouse_genomes_project 6 27410368 27411264 - Gm44296 antisense antisense MGP_AJ_T0100087.1 MGP_AJ_G0038053.1 mouse_genomes_project 6 39562582 39562688 + Gm23982 snRNA snRNA MGP_AJ_T0015604.1 MGP_AJ_G0013699.1 mouse_genomes_project 6 126720534 126725013 + processed_pseudogene processed_pseudogene MGP_AJ_T0080400.1 MGP_AJ_G0031289.1 mouse_genomes_project 6 126488677 126562602 - MGP_AJ_P0080400 Tspan9 protein_coding protein_coding MGP_AJ_T0080401.1 MGP_AJ_G0031289.1 mouse_genomes_project 6 126492538 126494129 - Tspan9 protein_coding retained_intron MGP_AJ_T0080402.1 MGP_AJ_G0031289.1 mouse_genomes_project 6 126493073 126563106 - MGP_AJ_P0080402 Tspan9 protein_coding protein_coding MGP_AJ_T0080403.1 MGP_AJ_G0031289.1 mouse_genomes_project 6 126493742 126673668 - MGP_AJ_P0080403 Tspan9 protein_coding protein_coding MGP_AJ_T0080404.1 MGP_AJ_G0031289.1 mouse_genomes_project 6 126493748 126670852 - MGP_AJ_P0080404 Tspan9 protein_coding protein_coding MGP_AJ_T0080405.1 MGP_AJ_G0031289.1 mouse_genomes_project 6 126494392 126673661 - MGP_AJ_P0080405 Tspan9 protein_coding protein_coding MGP_AJ_T0080406.1 MGP_AJ_G0031289.1 mouse_genomes_project 6 126494477 126654079 - MGP_AJ_P0080406 Tspan9 protein_coding protein_coding MGP_AJ_T0080407.1 MGP_AJ_G0031289.1 mouse_genomes_project 6 126610919 126673702 - Tspan9 protein_coding processed_transcript MGP_AJ_T0015291.1 MGP_AJ_G0013386.1 mouse_genomes_project 6 29939582 29940354 - processed_pseudogene processed_pseudogene MGP_AJ_T0000286.1 MGP_AJ_G0000230.1 mouse_genomes_project 6 65764326 65764613 - IG_V_pseudogene IG_V_pseudogene MGP_AJ_T0002165.1 MGP_AJ_G0002077.1 mouse_genomes_project 6 137556062 137556552 + TEC TEC MGP_AJ_T0080104.1 MGP_AJ_G0031235.1 mouse_genomes_project 6 123233582 123247491 - MGP_AJ_P0080104 Atn1 protein_coding protein_coding MGP_AJ_T0080105.1 MGP_AJ_G0031235.1 mouse_genomes_project 6 123236210 123236664 - Atn1 protein_coding processed_transcript MGP_AJ_T0080106.1 MGP_AJ_G0031235.1 mouse_genomes_project 6 123238757 123247093 - MGP_AJ_P0080106 Atn1 protein_coding protein_coding MGP_AJ_T0015506.1 MGP_AJ_G0013601.1 mouse_genomes_project 6 98735174 98735596 - processed_pseudogene processed_pseudogene MGP_AJ_T0080450.1 MGP_AJ_G0031298.1 mouse_genomes_project 6 126974416 126983856 - Fkbp4 protein_coding retained_intron MGP_AJ_T0080451.1 MGP_AJ_G0031298.1 mouse_genomes_project 6 126975294 126983856 - MGP_AJ_P0080451 Fkbp4 protein_coding protein_coding MGP_AJ_T0080452.1 MGP_AJ_G0031298.1 mouse_genomes_project 6 126978393 126983319 - MGP_AJ_P0080452 Fkbp4 protein_coding protein_coding MGP_AJ_T0080453.1 MGP_AJ_G0031298.1 mouse_genomes_project 6 126978940 126982832 - MGP_AJ_P0080453 Fkbp4 protein_coding protein_coding MGP_AJ_T0004988.1 MGP_AJ_G0004275.1 mouse_genomes_project 6 80958686 80965284 - Gm15624 antisense antisense MGP_AJ_T0004989.1 MGP_AJ_G0004275.1 mouse_genomes_project 6 80961900 80965306 - Gm15624 antisense antisense MGP_AJ_T0004990.1 MGP_AJ_G0004275.1 mouse_genomes_project 6 80962356 80965105 - Gm15624 antisense antisense MGP_AJ_T0005076.1 MGP_AJ_G0004331.1 mouse_genomes_project 6 123205806 123209064 - Gm15884 antisense antisense MGP_AJ_T0008497.1 MGP_AJ_G0006885.1 mouse_genomes_project 6 748155 764748 - Gm43986 lincRNA lincRNA MGP_AJ_T0079566.1 MGP_AJ_G0031125.1 mouse_genomes_project 6 113905959 113909202 - MGP_AJ_P0079566 Rpl32 protein_coding protein_coding MGP_AJ_T0079567.1 MGP_AJ_G0031125.1 mouse_genomes_project 6 113905966 113908803 - MGP_AJ_P0079567 Rpl32 protein_coding protein_coding MGP_AJ_T0077974.1 MGP_AJ_G0030810.1 mouse_genomes_project 6 63890165 63891201 - MGP_AJ_P0077974 Vmn1r38 protein_coding protein_coding MGP_AJ_T0015342.1 MGP_AJ_G0013437.1 mouse_genomes_project 6 46355054 46355800 - processed_pseudogene processed_pseudogene MGP_AJ_T0015447.1 MGP_AJ_G0013542.1 mouse_genomes_project 6 73970985 73971499 + processed_pseudogene processed_pseudogene MGP_AJ_T0008556.1 MGP_AJ_G0006921.1 mouse_genomes_project 6 28293714 28430153 + Gm43154 lincRNA lincRNA MGP_AJ_T0008557.1 MGP_AJ_G0006921.1 mouse_genomes_project 6 28293792 28430416 + Gm43154 lincRNA lincRNA MGP_AJ_T0008560.1 MGP_AJ_G0006921.1 mouse_genomes_project 6 28354407 28430418 + Gm43154 lincRNA lincRNA MGP_AJ_T0079469.1 MGP_AJ_G0031107.1 mouse_genomes_project 6 111824023 112124524 - MGP_AJ_P0079469 Atp2b2 protein_coding protein_coding MGP_AJ_T0079470.1 MGP_AJ_G0031107.1 mouse_genomes_project 6 111825861 111971703 - MGP_AJ_P0079470 Atp2b2 protein_coding protein_coding MGP_AJ_T0079471.1 MGP_AJ_G0031107.1 mouse_genomes_project 6 111825862 112124524 - MGP_AJ_P0079471 Atp2b2 protein_coding nonsense_mediated_decay MGP_AJ_T0079472.1 MGP_AJ_G0031107.1 mouse_genomes_project 6 111827258 111971703 - MGP_AJ_P0079472 Atp2b2 protein_coding protein_coding MGP_AJ_T0079473.1 MGP_AJ_G0031107.1 mouse_genomes_project 6 111828486 112016717 - MGP_AJ_P0079473 Atp2b2 protein_coding protein_coding MGP_AJ_T0079474.1 MGP_AJ_G0031107.1 mouse_genomes_project 6 111883527 111971534 - Atp2b2 protein_coding retained_intron MGP_AJ_T0079475.1 MGP_AJ_G0031107.1 mouse_genomes_project 6 111922518 111991454 - Atp2b2 protein_coding processed_transcript MGP_AJ_T0079476.1 MGP_AJ_G0031107.1 mouse_genomes_project 6 111922736 112125149 - Atp2b2 protein_coding processed_transcript MGP_AJ_T0005001.1 MGP_AJ_G0004281.1 mouse_genomes_project 6 82732099 82735973 + Gm44012 antisense antisense MGP_AJ_T0076242.1 MGP_AJ_G0030401.1 mouse_genomes_project 6 1319599 1362190 + MGP_AJ_P0076242 Casd1 protein_coding protein_coding MGP_AJ_T0076243.1 MGP_AJ_G0030401.1 mouse_genomes_project 6 1319709 1342978 + MGP_AJ_P0076243 Casd1 protein_coding protein_coding MGP_AJ_T0076244.1 MGP_AJ_G0030401.1 mouse_genomes_project 6 1319906 1327447 + MGP_AJ_P0076244 Casd1 protein_coding nonsense_mediated_decay MGP_AJ_T0076245.1 MGP_AJ_G0030401.1 mouse_genomes_project 6 1319963 1339845 + MGP_AJ_P0076245 Casd1 protein_coding protein_coding MGP_AJ_T0076246.1 MGP_AJ_G0030401.1 mouse_genomes_project 6 1349655 1359817 + MGP_AJ_P0076246 Casd1 protein_coding protein_coding MGP_AJ_T0078668.1 MGP_AJ_G0030947.1 mouse_genomes_project 6 84581030 84590523 - MGP_AJ_P0078668 Snrnp27 protein_coding protein_coding MGP_AJ_T0078669.1 MGP_AJ_G0030947.1 mouse_genomes_project 6 84581284 84590492 - Snrnp27 protein_coding processed_transcript MGP_AJ_T0078670.1 MGP_AJ_G0030947.1 mouse_genomes_project 6 84581551 84590523 - MGP_AJ_P0078670 Snrnp27 protein_coding protein_coding MGP_AJ_T0078671.1 MGP_AJ_G0030947.1 mouse_genomes_project 6 84588677 84590518 - Snrnp27 protein_coding processed_transcript MGP_AJ_T0015526.1 MGP_AJ_G0013621.1 mouse_genomes_project 6 105959646 105960135 + processed_pseudogene processed_pseudogene MGP_AJ_T0076772.1 MGP_AJ_G0030505.1 mouse_genomes_project 6 26576044 26618430 + MGP_AJ_P0076772 Strip2 protein_coding protein_coding MGP_AJ_T0076773.1 MGP_AJ_G0030505.1 mouse_genomes_project 6 26576045 26604536 + Strip2 protein_coding retained_intron MGP_AJ_T0076774.1 MGP_AJ_G0030505.1 mouse_genomes_project 6 26576045 26616527 + Strip2 protein_coding retained_intron MGP_AJ_T0076775.1 MGP_AJ_G0030505.1 mouse_genomes_project 6 26576045 26618436 + MGP_AJ_P0076775 Strip2 protein_coding protein_coding MGP_AJ_T0076776.1 MGP_AJ_G0030505.1 mouse_genomes_project 6 26576045 26606058 + MGP_AJ_P0076776 Strip2 protein_coding protein_coding MGP_AJ_T0077301.1 MGP_AJ_G0030622.1 mouse_genomes_project 6 39088853 39103628 - MGP_AJ_P0077301 Epha1 protein_coding protein_coding MGP_AJ_T0077302.1 MGP_AJ_G0030622.1 mouse_genomes_project 6 39089082 39103628 - MGP_AJ_P0077302 Epha1 protein_coding protein_coding MGP_AJ_T0077303.1 MGP_AJ_G0030622.1 mouse_genomes_project 6 39097401 39103595 - Epha1 protein_coding retained_intron MGP_AJ_T0002175.1 MGP_AJ_G0002087.1 mouse_genomes_project 6 144277539 144280100 - TEC TEC MGP_AJ_T0100129.1 MGP_AJ_G0038095.1 mouse_genomes_project 6 148054814 148054921 - Gm22578 snRNA snRNA MGP_AJ_T0079016.1 MGP_AJ_G0031020.1 mouse_genomes_project 6 89816148 89901005 - MGP_AJ_P0079016 Grip2 protein_coding unknown_likely_coding MGP_AJ_T0079017.1 MGP_AJ_G0031020.1 mouse_genomes_project 6 89816152 89884064 - MGP_AJ_P0079017 Grip2 protein_coding nonsense_mediated_decay MGP_AJ_T0079018.1 MGP_AJ_G0031020.1 mouse_genomes_project 6 89816152 89862042 - MGP_AJ_P0079018 Grip2 protein_coding protein_coding MGP_AJ_T0079019.1 MGP_AJ_G0031020.1 mouse_genomes_project 6 89818091 89861904 - MGP_AJ_P0079019 Grip2 protein_coding protein_coding MGP_AJ_T0079020.1 MGP_AJ_G0031020.1 mouse_genomes_project 6 89838116 89861979 - MGP_AJ_P0079020 Grip2 protein_coding nonsense_mediated_decay MGP_AJ_T0079021.1 MGP_AJ_G0031020.1 mouse_genomes_project 6 89839183 89850828 - MGP_AJ_P0079021 Grip2 protein_coding nonsense_mediated_decay MGP_AJ_T0079022.1 MGP_AJ_G0031020.1 mouse_genomes_project 6 89847289 89850844 - Grip2 protein_coding retained_intron MGP_AJ_T0102684.1 MGP_AJ_G0040426.1 mouse_genomes_project 6 54781982 54782484 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0015534.1 MGP_AJ_G0013629.1 mouse_genomes_project 6 108813800 108813932 + processed_pseudogene processed_pseudogene MGP_AJ_T0008713.1 MGP_AJ_G0007038.1 mouse_genomes_project 6 110757650 110768209 + Gm26799 lincRNA lincRNA MGP_AJ_T0077838.1 MGP_AJ_G0030768.1 mouse_genomes_project 6 54277529 54278616 - MGP_AJ_P0077838 Vmn1r18 protein_coding protein_coding MGP_AJ_T0077965.1 MGP_AJ_G0030802.1 mouse_genomes_project 6 63028643 63030049 + MGP_AJ_P0077965 4930544G11Rik protein_coding protein_coding MGP_AJ_T0015343.1 MGP_AJ_G0013438.1 mouse_genomes_project 6 46527047 46527320 - processed_pseudogene processed_pseudogene MGP_AJ_T0004966.1 MGP_AJ_G0004259.1 mouse_genomes_project 6 60366740 60369905 - Gm44071 antisense antisense MGP_AJ_T0100105.1 MGP_AJ_G0038071.1 mouse_genomes_project 6 95814044 95814137 + Gm24565 snRNA snRNA MGP_AJ_T0015518.1 MGP_AJ_G0013613.1 mouse_genomes_project 6 102064828 102065208 - processed_pseudogene processed_pseudogene MGP_AJ_T0002038.1 MGP_AJ_G0001951.1 mouse_genomes_project 6 80780113 80781577 + TEC TEC MGP_AJ_T0080549.1 MGP_AJ_G0031326.1 mouse_genomes_project 6 128213981 128218219 - MGP_AJ_P0080549 Klrc3 protein_coding protein_coding MGP_AJ_T0080550.1 MGP_AJ_G0031326.1 mouse_genomes_project 6 128213981 128218219 - MGP_AJ_P0080550 Klrc3 protein_coding nonsense_mediated_decay MGP_AJ_T0080551.1 MGP_AJ_G0031326.1 mouse_genomes_project 6 128214002 128218219 - MGP_AJ_P0080551 Klrc3 protein_coding protein_coding MGP_AJ_T0080608.1 MGP_AJ_G0031356.1 mouse_genomes_project 6 131250987 131253536 + MGP_AJ_P0080608 Prh1 protein_coding protein_coding MGP_AJ_T0008667.1 MGP_AJ_G0007003.1 mouse_genomes_project 6 84417865 84420231 - Gm44386 lincRNA lincRNA MGP_AJ_T0102696.1 MGP_AJ_G0040438.1 mouse_genomes_project 6 59989186 59989517 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0100118.1 MGP_AJ_G0038084.1 mouse_genomes_project 6 121514010 121514092 - Gm22946 snRNA snRNA MGP_AJ_T0008590.1 MGP_AJ_G0006942.1 mouse_genomes_project 6 45152771 45184726 - lincRNA lincRNA MGP_AJ_T0078568.1 MGP_AJ_G0030930.1 mouse_genomes_project 6 83751480 83756118 - MGP_AJ_P0078568 Nat8f2 protein_coding protein_coding MGP_AJ_T0077692.1 MGP_AJ_G0030726.1 mouse_genomes_project 6 50726195 50834977 - MGP_AJ_P0077692 Cpvl protein_coding protein_coding MGP_AJ_T0077693.1 MGP_AJ_G0030726.1 mouse_genomes_project 6 50726295 50834968 - MGP_AJ_P0077693 Cpvl protein_coding protein_coding MGP_AJ_T0077694.1 MGP_AJ_G0030726.1 mouse_genomes_project 6 50726295 50834968 - MGP_AJ_P0077694 Cpvl protein_coding protein_coding MGP_AJ_T0015401.1 MGP_AJ_G0013496.1 mouse_genomes_project 6 63601437 63603352 + processed_pseudogene processed_pseudogene MGP_AJ_T0100079.1 MGP_AJ_G0038045.1 mouse_genomes_project 6 26127982 26128088 - Gm26484 snRNA snRNA MGP_AJ_T0080905.1 MGP_AJ_G0031431.1 mouse_genomes_project 6 140911217 140952293 - MGP_AJ_P0080905 Slco1a1 protein_coding protein_coding MGP_AJ_T0080906.1 MGP_AJ_G0031431.1 mouse_genomes_project 6 140911788 140952445 - MGP_AJ_P0080906 Slco1a1 protein_coding protein_coding MGP_AJ_T0080907.1 MGP_AJ_G0031431.1 mouse_genomes_project 6 140927351 140952299 - Slco1a1 protein_coding retained_intron MGP_AJ_T0015494.1 MGP_AJ_G0013589.1 mouse_genomes_project 6 92959466 92959902 - processed_pseudogene processed_pseudogene MGP_AJ_T0077219.1 MGP_AJ_G0030592.1 mouse_genomes_project 6 37670903 37691741 - MGP_AJ_P0077219 1700074P13Rik protein_coding protein_coding MGP_AJ_T0077220.1 MGP_AJ_G0030592.1 mouse_genomes_project 6 37670926 37691801 - MGP_AJ_P0077220 1700074P13Rik protein_coding protein_coding MGP_AJ_T0077221.1 MGP_AJ_G0030592.1 mouse_genomes_project 6 37672250 37681666 - MGP_AJ_P0077221 1700074P13Rik protein_coding protein_coding MGP_AJ_T0102701.1 MGP_AJ_G0040443.1 mouse_genomes_project 6 84041597 84042640 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0077379.1 MGP_AJ_G0030654.1 mouse_genomes_project 6 44277491 44347122 - MGP_AJ_P0077379 Ezh2 protein_coding protein_coding MGP_AJ_T0077380.1 MGP_AJ_G0030654.1 mouse_genomes_project 6 44277491 44347122 - MGP_AJ_P0077380 Ezh2 protein_coding protein_coding MGP_AJ_T0077381.1 MGP_AJ_G0030654.1 mouse_genomes_project 6 44277491 44347122 - MGP_AJ_P0077381 Ezh2 protein_coding protein_coding MGP_AJ_T0077382.1 MGP_AJ_G0030654.1 mouse_genomes_project 6 44277491 44289745 - MGP_AJ_P0077382 Ezh2 protein_coding protein_coding MGP_AJ_T0077383.1 MGP_AJ_G0030654.1 mouse_genomes_project 6 44277671 44279469 - Ezh2 protein_coding retained_intron MGP_AJ_T0077384.1 MGP_AJ_G0030654.1 mouse_genomes_project 6 44277893 44328679 - MGP_AJ_P0077384 Ezh2 protein_coding protein_coding MGP_AJ_T0077385.1 MGP_AJ_G0030654.1 mouse_genomes_project 6 44279362 44282478 - Ezh2 protein_coding retained_intron MGP_AJ_T0077386.1 MGP_AJ_G0030654.1 mouse_genomes_project 6 44279982 44289719 - Ezh2 protein_coding retained_intron MGP_AJ_T0077387.1 MGP_AJ_G0030654.1 mouse_genomes_project 6 44281094 44295394 - Ezh2 protein_coding retained_intron MGP_AJ_T0077388.1 MGP_AJ_G0030654.1 mouse_genomes_project 6 44289852 44301274 - MGP_AJ_P0077388 Ezh2 protein_coding nonsense_mediated_decay MGP_AJ_T0077389.1 MGP_AJ_G0030654.1 mouse_genomes_project 6 44293516 44301274 - MGP_AJ_P0077389 Ezh2 protein_coding nonsense_mediated_decay MGP_AJ_T0077390.1 MGP_AJ_G0030654.1 mouse_genomes_project 6 44295293 44303724 - MGP_AJ_P0077390 Ezh2 protein_coding nonsense_mediated_decay MGP_AJ_T0077391.1 MGP_AJ_G0030654.1 mouse_genomes_project 6 44295346 44347150 - MGP_AJ_P0077391 Ezh2 protein_coding nonsense_mediated_decay MGP_AJ_T0077392.1 MGP_AJ_G0030654.1 mouse_genomes_project 6 44301896 44347433 - MGP_AJ_P0077392 Ezh2 protein_coding protein_coding MGP_AJ_T0077393.1 MGP_AJ_G0030654.1 mouse_genomes_project 6 44305535 44329026 - Ezh2 protein_coding processed_transcript MGP_AJ_T0077615.1 MGP_AJ_G0030706.1 mouse_genomes_project 6 48354987 48420361 + MGP_AJ_P0077615 Snx10 protein_coding unknown_likely_coding MGP_AJ_T0077616.1 MGP_AJ_G0030706.1 mouse_genomes_project 6 48354996 48399611 + Snx10 protein_coding retained_intron MGP_AJ_T0077617.1 MGP_AJ_G0030706.1 mouse_genomes_project 6 48355272 48411760 + MGP_AJ_P0077617 Snx10 protein_coding protein_coding MGP_AJ_T0077618.1 MGP_AJ_G0030706.1 mouse_genomes_project 6 48355297 48419835 + MGP_AJ_P0077618 Snx10 protein_coding protein_coding MGP_AJ_T0077619.1 MGP_AJ_G0030706.1 mouse_genomes_project 6 48375954 48420442 + MGP_AJ_P0077619 Snx10 protein_coding nonsense_mediated_decay MGP_AJ_T0001987.1 MGP_AJ_G0001900.1 mouse_genomes_project 6 49571235 49571847 - TEC TEC MGP_AJ_T0002674.1 MGP_AJ_G0002555.1 mouse_genomes_project 6 37875813 37876250 + MGP_AJ_P0002674 Trbv13-2 TR_V_gene TR_V_gene MGP_AJ_T0102681.1 MGP_AJ_G0040423.1 mouse_genomes_project 6 54079237 54080075 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0080493.1 MGP_AJ_G0031310.1 mouse_genomes_project 6 127624332 127635805 + MGP_AJ_P0080493 Klrb1f protein_coding protein_coding MGP_AJ_T0080494.1 MGP_AJ_G0031310.1 mouse_genomes_project 6 127624332 127635805 + MGP_AJ_P0080494 Klrb1f protein_coding nonsense_mediated_decay MGP_AJ_T0080495.1 MGP_AJ_G0031310.1 mouse_genomes_project 6 127624351 127635050 + MGP_AJ_P0080495 Klrb1f protein_coding nonsense_mediated_decay MGP_AJ_T0080496.1 MGP_AJ_G0031310.1 mouse_genomes_project 6 127624356 127631138 + Klrb1f protein_coding retained_intron MGP_AJ_T0080497.1 MGP_AJ_G0031310.1 mouse_genomes_project 6 127624358 127632211 + MGP_AJ_P0080497 Klrb1f protein_coding protein_coding MGP_AJ_T0080498.1 MGP_AJ_G0031310.1 mouse_genomes_project 6 127627686 127632217 + Klrb1f protein_coding processed_transcript MGP_AJ_T0076650.1 MGP_AJ_G0030485.1 mouse_genomes_project 6 25285326 25456964 - MGP_AJ_P0076650 Lrrc4 protein_coding protein_coding MGP_AJ_T0076655.1 MGP_AJ_G0030485.1 mouse_genomes_project 6 25454751 25458366 - MGP_AJ_P0076655 Lrrc4 protein_coding protein_coding MGP_AJ_T0010818.1 MGP_AJ_G0008940.1 mouse_genomes_project 6 135658605 135658746 - Gm44364 miRNA miRNA MGP_AJ_T0101369.1 MGP_AJ_G0039335.1 mouse_genomes_project 6 98603530 98603664 - Gm23234 snoRNA snoRNA MGP_AJ_T0078008.1 MGP_AJ_G0030815.1 mouse_genomes_project 6 64378605 64438177 - MGP_AJ_P0078008 Il12rb2 protein_coding protein_coding MGP_AJ_T0078009.1 MGP_AJ_G0030815.1 mouse_genomes_project 6 64379391 64478370 - MGP_AJ_P0078009 Il12rb2 protein_coding protein_coding MGP_AJ_T0005083.1 MGP_AJ_G0004337.1 mouse_genomes_project 6 125332469 125335273 + Gm42574 antisense antisense MGP_AJ_T0015496.1 MGP_AJ_G0013591.1 mouse_genomes_project 6 93359365 93363571 + processed_pseudogene processed_pseudogene MGP_AJ_T0077406.1 MGP_AJ_G0030660.1 mouse_genomes_project 6 44702847 44714819 + MGP_AJ_P0077406 Zfp956 protein_coding protein_coding MGP_AJ_T0077407.1 MGP_AJ_G0030660.1 mouse_genomes_project 6 44702902 44705718 + Zfp956 protein_coding retained_intron MGP_AJ_T0077408.1 MGP_AJ_G0030660.1 mouse_genomes_project 6 44702904 44714816 + MGP_AJ_P0077408 Zfp956 protein_coding nonsense_mediated_decay MGP_AJ_T0078028.1 MGP_AJ_G0030824.1 mouse_genomes_project 6 68922835 68972003 - MGP_AJ_P0078028 Smyd1 protein_coding protein_coding MGP_AJ_T0078029.1 MGP_AJ_G0030824.1 mouse_genomes_project 6 68922837 68971975 - MGP_AJ_P0078029 Smyd1 protein_coding protein_coding MGP_AJ_T0078030.1 MGP_AJ_G0030824.1 mouse_genomes_project 6 68924235 69031407 - MGP_AJ_P0078030 Smyd1 protein_coding protein_coding MGP_AJ_T0078031.1 MGP_AJ_G0030824.1 mouse_genomes_project 6 68924393 68925768 - MGP_AJ_P0078031 Smyd1 protein_coding protein_coding MGP_AJ_T0078032.1 MGP_AJ_G0030824.1 mouse_genomes_project 6 68968879 68971954 - MGP_AJ_P0078032 Smyd1 protein_coding protein_coding MGP_AJ_T0078037.1 MGP_AJ_G0030824.1 mouse_genomes_project 6 69020613 69031380 - MGP_AJ_P0078037 Smyd1 protein_coding protein_coding MGP_AJ_T0005633.1 MGP_AJ_G0004742.1 mouse_genomes_project 6 113767580 113769393 + D830050J10Rik bidirectional_promoter_lncRNA bidirectional_promoter_lncRNA MGP_AJ_T0005634.1 MGP_AJ_G0004742.1 mouse_genomes_project 6 113767607 113768749 + D830050J10Rik bidirectional_promoter_lncRNA bidirectional_promoter_lncRNA MGP_AJ_T0011624.1 MGP_AJ_G0009746.1 mouse_genomes_project 6 14344170 14344279 + Gm27762 misc_RNA misc_RNA MGP_AJ_T0076560.1 MGP_AJ_G0030459.1 mouse_genomes_project 6 19741365 19802284 - MGP_AJ_P0076560 Aass protein_coding protein_coding MGP_AJ_T0076561.1 MGP_AJ_G0030459.1 mouse_genomes_project 6 19762230 19797268 - Aass protein_coding processed_transcript MGP_AJ_T0076562.1 MGP_AJ_G0030459.1 mouse_genomes_project 6 19762230 19797300 - MGP_AJ_P0076562 Aass protein_coding protein_coding MGP_AJ_T0076563.1 MGP_AJ_G0030459.1 mouse_genomes_project 6 19779238 19802214 - Aass protein_coding processed_transcript MGP_AJ_T0011676.1 MGP_AJ_G0009798.1 mouse_genomes_project 6 144327175 144327505 - Gm22793 misc_RNA misc_RNA MGP_AJ_T0078543.1 MGP_AJ_G0030923.1 mouse_genomes_project 6 83315500 83319987 - MGP_AJ_P0078543 Pradc1 protein_coding protein_coding MGP_AJ_T0078544.1 MGP_AJ_G0030923.1 mouse_genomes_project 6 83315731 83320009 - Pradc1 protein_coding retained_intron MGP_AJ_T0078545.1 MGP_AJ_G0030923.1 mouse_genomes_project 6 83315732 83320056 - MGP_AJ_P0078545 Pradc1 protein_coding protein_coding MGP_AJ_T0078546.1 MGP_AJ_G0030923.1 mouse_genomes_project 6 83315905 83320753 - Pradc1 protein_coding processed_transcript MGP_AJ_T0078547.1 MGP_AJ_G0030923.1 mouse_genomes_project 6 83316230 83320032 - Pradc1 protein_coding processed_transcript MGP_AJ_T0078548.1 MGP_AJ_G0030923.1 mouse_genomes_project 6 83316245 83320064 - Pradc1 protein_coding retained_intron MGP_AJ_T0078549.1 MGP_AJ_G0030923.1 mouse_genomes_project 6 83316377 83320021 - Pradc1 protein_coding processed_transcript MGP_AJ_T0015554.1 MGP_AJ_G0013649.1 mouse_genomes_project 6 114737470 114738586 - processed_pseudogene processed_pseudogene MGP_AJ_T0015553.1 MGP_AJ_G0013648.1 mouse_genomes_project 6 114578166 114578686 + processed_pseudogene processed_pseudogene MGP_AJ_T0076579.1 MGP_AJ_G0030463.1 mouse_genomes_project 6 20304758 20305997 - MGP_AJ_P0076579 Rnf148 protein_coding protein_coding MGP_AJ_T0015272.1 MGP_AJ_G0013367.1 mouse_genomes_project 6 18166469 18166689 + processed_pseudogene processed_pseudogene MGP_AJ_T0079997.1 MGP_AJ_G0031203.1 mouse_genomes_project 6 121197779 121206808 - MGP_AJ_P0079997 C3ar1 protein_coding protein_coding MGP_AJ_T0080002.1 MGP_AJ_G0031205.1 mouse_genomes_project 6 121264774 121278149 + MGP_AJ_P0080002 Clec4a1 protein_coding protein_coding MGP_AJ_T0076932.1 MGP_AJ_G0030530.1 mouse_genomes_project 6 31049390 31063865 + MGP_AJ_P0076932 Akr1b8 protein_coding protein_coding MGP_AJ_T0076933.1 MGP_AJ_G0030530.1 mouse_genomes_project 6 31051386 31060641 + Akr1b8 protein_coding processed_transcript MGP_AJ_T0077973.1 MGP_AJ_G0030809.1 mouse_genomes_project 6 63772393 63786280 - MGP_AJ_P0077973 protein_coding protein_coding MGP_AJ_T0000296.1 MGP_AJ_G0000240.1 mouse_genomes_project 6 66228351 66228637 + IG_V_pseudogene IG_V_pseudogene MGP_AJ_T0076402.1 MGP_AJ_G0030433.1 mouse_genomes_project 6 10288832 10359326 - MGP_AJ_P0076402 Bmt2 protein_coding protein_coding MGP_AJ_T0076403.1 MGP_AJ_G0030433.1 mouse_genomes_project 6 10289965 10359298 - MGP_AJ_P0076403 Bmt2 protein_coding protein_coding MGP_AJ_T0002023.1 MGP_AJ_G0001936.1 mouse_genomes_project 6 75264036 75267272 - TEC TEC MGP_AJ_T0076291.1 MGP_AJ_G0030409.1 mouse_genomes_project 6 2241804 2254902 - MGP_AJ_P0076291 Pdk4 protein_coding protein_coding MGP_AJ_T0076292.1 MGP_AJ_G0030409.1 mouse_genomes_project 6 2250040 2254854 - MGP_AJ_P0076292 Pdk4 protein_coding protein_coding MGP_AJ_T0076293.1 MGP_AJ_G0030409.1 mouse_genomes_project 6 2253312 2254868 - Pdk4 protein_coding retained_intron MGP_AJ_T0010746.1 MGP_AJ_G0008868.1 mouse_genomes_project 6 24552936 24553032 - Mir592 miRNA miRNA MGP_AJ_T0015335.1 MGP_AJ_G0013430.1 mouse_genomes_project 6 45773972 45775062 + processed_pseudogene processed_pseudogene MGP_AJ_T0098461.1 MGP_AJ_G0036445.1 mouse_genomes_project 6 49065914 49066363 - pseudogene pseudogene MGP_AJ_T0078246.1 MGP_AJ_G0030867.1 mouse_genomes_project 6 76212316 76214619 - Reg3g protein_coding retained_intron MGP_AJ_T0078247.1 MGP_AJ_G0030867.1 mouse_genomes_project 6 76212316 76214920 - MGP_AJ_P0078247 Reg3g protein_coding protein_coding MGP_AJ_T0008769.1 MGP_AJ_G0007082.1 mouse_genomes_project 6 138506486 138509266 - Gm44272 lincRNA lincRNA MGP_AJ_T0008788.1 MGP_AJ_G0007096.1 mouse_genomes_project 6 146185989 146216718 + E330012B07Rik lincRNA lincRNA MGP_AJ_T0008789.1 MGP_AJ_G0007096.1 mouse_genomes_project 6 146186007 146210119 + E330012B07Rik lincRNA lincRNA MGP_AJ_T0078039.1 MGP_AJ_G0030827.1 mouse_genomes_project 6 69084572 69088632 + Cd8a protein_coding retained_intron MGP_AJ_T0078040.1 MGP_AJ_G0030827.1 mouse_genomes_project 6 69084577 69087936 + MGP_AJ_P0078040 Cd8a protein_coding protein_coding MGP_AJ_T0015388.1 MGP_AJ_G0013483.1 mouse_genomes_project 6 62332509 62332843 + processed_pseudogene processed_pseudogene MGP_AJ_T0015467.1 MGP_AJ_G0013562.1 mouse_genomes_project 6 82919096 82919238 + processed_pseudogene processed_pseudogene MGP_AJ_T0005025.1 MGP_AJ_G0004294.1 mouse_genomes_project 6 86445767 86446440 + Gm44170 antisense antisense MGP_AJ_T0008798.1 MGP_AJ_G0007102.1 mouse_genomes_project 6 147645668 147664197 - 4930528G23Rik lincRNA lincRNA MGP_AJ_T0076395.1 MGP_AJ_G0030432.1 mouse_genomes_project 6 10243145 10270607 - MGP_AJ_P0076395 Tmem168 protein_coding protein_coding MGP_AJ_T0076396.1 MGP_AJ_G0030432.1 mouse_genomes_project 6 10245245 10264958 - MGP_AJ_P0076396 Tmem168 protein_coding protein_coding MGP_AJ_T0076397.1 MGP_AJ_G0030432.1 mouse_genomes_project 6 10265889 10270255 - Tmem168 protein_coding processed_transcript MGP_AJ_T0076398.1 MGP_AJ_G0030432.1 mouse_genomes_project 6 10265905 10270512 - Tmem168 protein_coding processed_transcript MGP_AJ_T0076399.1 MGP_AJ_G0030432.1 mouse_genomes_project 6 10268442 10270551 - Tmem168 protein_coding processed_transcript MGP_AJ_T0076400.1 MGP_AJ_G0030432.1 mouse_genomes_project 6 10269105 10270526 - Tmem168 protein_coding processed_transcript MGP_AJ_T0076401.1 MGP_AJ_G0030432.1 mouse_genomes_project 6 10269794 10270534 - Tmem168 protein_coding processed_transcript MGP_AJ_T0080021.1 MGP_AJ_G0031212.1 mouse_genomes_project 6 121577040 121589849 + MGP_AJ_P0080021 Clec4d protein_coding nonsense_mediated_decay MGP_AJ_T0080022.1 MGP_AJ_G0031212.1 mouse_genomes_project 6 121577046 121590191 + MGP_AJ_P0080022 Clec4d protein_coding protein_coding MGP_AJ_T0080023.1 MGP_AJ_G0031212.1 mouse_genomes_project 6 121582651 121589638 + Clec4d protein_coding retained_intron MGP_AJ_T0002005.1 MGP_AJ_G0001918.1 mouse_genomes_project 6 69510107 69512916 + TEC TEC MGP_AJ_T0076636.1 MGP_AJ_G0030482.1 mouse_genomes_project 6 25049567 25061562 + MGP_AJ_P0076636 Fscn3 protein_coding protein_coding MGP_AJ_T0076637.1 MGP_AJ_G0030482.1 mouse_genomes_project 6 25055951 25057549 + Fscn3 protein_coding processed_transcript MGP_AJ_T0077258.1 MGP_AJ_G0030612.1 mouse_genomes_project 6 38715626 38720577 + MGP_AJ_P0077258 Sval3 protein_coding protein_coding MGP_AJ_T0015523.1 MGP_AJ_G0013618.1 mouse_genomes_project 6 105405728 105405954 - processed_pseudogene processed_pseudogene MGP_AJ_T0008803.1 MGP_AJ_G0007107.1 mouse_genomes_project 6 148588155 148589028 + Gm21814 lincRNA lincRNA MGP_AJ_T0008804.1 MGP_AJ_G0007107.1 mouse_genomes_project 6 148588197 148605768 + Gm21814 lincRNA lincRNA MGP_AJ_T0008805.1 MGP_AJ_G0007107.1 mouse_genomes_project 6 148604280 148605933 + Gm21814 lincRNA lincRNA MGP_AJ_T0078193.1 MGP_AJ_G0030852.1 mouse_genomes_project 6 70337048 70345364 - MGP_AJ_P0078193 Tgoln1 protein_coding protein_coding MGP_AJ_T0001917.1 MGP_AJ_G0001830.1 mouse_genomes_project 6 3634723 3636077 - TEC TEC MGP_AJ_T0015514.1 MGP_AJ_G0013609.1 mouse_genomes_project 6 101035393 101036628 - processed_pseudogene processed_pseudogene MGP_AJ_T0015646.1 MGP_AJ_G0013741.1 mouse_genomes_project 6 133671393 133671802 + processed_pseudogene processed_pseudogene MGP_AJ_T0077200.1 MGP_AJ_G0030583.1 mouse_genomes_project 6 37249127 37250140 + MGP_AJ_P0077200 Tas2r108 protein_coding protein_coding MGP_AJ_T0077865.1 MGP_AJ_G0030780.1 mouse_genomes_project 6 54895090 54896143 - MGP_AJ_P0077865 Vmn1r25 protein_coding protein_coding MGP_AJ_T0002075.1 MGP_AJ_G0001988.1 mouse_genomes_project 6 88424619 88427170 + TEC TEC MGP_AJ_T0080703.1 MGP_AJ_G0031392.1 mouse_genomes_project 6 134030095 134075420 + MGP_AJ_P0080703 Fam234b protein_coding protein_coding MGP_AJ_T0080704.1 MGP_AJ_G0031392.1 mouse_genomes_project 6 134030095 134066705 + MGP_AJ_P0080704 Fam234b protein_coding protein_coding MGP_AJ_T0080705.1 MGP_AJ_G0031392.1 mouse_genomes_project 6 134030227 134041381 + MGP_AJ_P0080705 Fam234b protein_coding protein_coding MGP_AJ_T0080706.1 MGP_AJ_G0031392.1 mouse_genomes_project 6 134030530 134041410 + MGP_AJ_P0080706 Fam234b protein_coding protein_coding MGP_AJ_T0080707.1 MGP_AJ_G0031392.1 mouse_genomes_project 6 134062057 134066701 + Fam234b protein_coding retained_intron MGP_AJ_T0077209.1 MGP_AJ_G0030588.1 mouse_genomes_project 6 37345927 37346923 - MGP_AJ_P0077209 Tas2r138 protein_coding protein_coding MGP_AJ_T0078070.1 MGP_AJ_G0030833.1 mouse_genomes_project 6 69532766 69543580 - MGP_AJ_P0078070 Mrpl35 protein_coding protein_coding MGP_AJ_T0078071.1 MGP_AJ_G0030833.1 mouse_genomes_project 6 69535932 69543533 - MGP_AJ_P0078071 Mrpl35 protein_coding nonsense_mediated_decay MGP_AJ_T0078072.1 MGP_AJ_G0030833.1 mouse_genomes_project 6 69537438 69546737 - Mrpl35 protein_coding processed_transcript MGP_AJ_T0000302.1 MGP_AJ_G0000246.1 mouse_genomes_project 6 66761147 66761680 - IG_V_pseudogene IG_V_pseudogene MGP_AJ_T0076327.1 MGP_AJ_G0030418.1 mouse_genomes_project 6 4608273 4639004 + MGP_AJ_P0076327 C1galt1 protein_coding protein_coding MGP_AJ_T0005070.1 MGP_AJ_G0004325.1 mouse_genomes_project 6 119109444 119110410 + Gm43916 antisense antisense MGP_AJ_T0010751.1 MGP_AJ_G0008873.1 mouse_genomes_project 6 26820951 26821026 - Mir182 miRNA miRNA MGP_AJ_T0078744.1 MGP_AJ_G0030965.1 mouse_genomes_project 6 85713207 85762481 - MGP_AJ_P0078744 Gm45140 protein_coding nonsense_mediated_decay MGP_AJ_T0078748.1 MGP_AJ_G0030965.1 mouse_genomes_project 6 85716792 85747319 - MGP_AJ_P0078748 Gm45140 protein_coding protein_coding MGP_AJ_T0002673.1 MGP_AJ_G0002554.1 mouse_genomes_project 6 37873268 37873782 + MGP_AJ_P0002673 Trbv12-2 TR_V_gene TR_V_gene MGP_AJ_T0000144.1 MGP_AJ_G0000109.1 mouse_genomes_project 6 65135768 65136235 - MGP_AJ_P0000144 Igkv9-124 IG_V_gene IG_V_gene MGP_AJ_T0008637.1 MGP_AJ_G0006979.1 mouse_genomes_project 6 69004002 69013114 + Gm1070 lincRNA lincRNA MGP_AJ_T0078997.1 MGP_AJ_G0031017.1 mouse_genomes_project 6 89541970 89568703 - MGP_AJ_P0078997 Xpc protein_coding protein_coding MGP_AJ_T0078998.1 MGP_AJ_G0031017.1 mouse_genomes_project 6 89544938 89568610 - MGP_AJ_P0078998 Xpc protein_coding nonsense_mediated_decay MGP_AJ_T0078999.1 MGP_AJ_G0031017.1 mouse_genomes_project 6 89559730 89568699 - MGP_AJ_P0078999 Xpc protein_coding protein_coding MGP_AJ_T0008759.1 MGP_AJ_G0007077.1 mouse_genomes_project 6 133765364 133791935 + Lockd lincRNA lincRNA MGP_AJ_T0008760.1 MGP_AJ_G0007077.1 mouse_genomes_project 6 133765370 133786701 + Lockd lincRNA lincRNA MGP_AJ_T0008761.1 MGP_AJ_G0007077.1 mouse_genomes_project 6 133765370 133786935 + Lockd lincRNA lincRNA MGP_AJ_T0008762.1 MGP_AJ_G0007077.1 mouse_genomes_project 6 133765405 133786933 + Lockd lincRNA lincRNA MGP_AJ_T0008763.1 MGP_AJ_G0007077.1 mouse_genomes_project 6 133765427 133787076 + Lockd lincRNA lincRNA MGP_AJ_T0077224.1 MGP_AJ_G0030595.1 mouse_genomes_project 6 37748526 37752415 - MGP_AJ_P0077224 protein_coding protein_coding MGP_AJ_T0077222.1 MGP_AJ_G0030593.1 mouse_genomes_project 6 37697059 37700555 - MGP_AJ_P0077222 Gm4744 protein_coding protein_coding MGP_AJ_T0001945.1 MGP_AJ_G0001858.1 mouse_genomes_project 6 27970542 27973273 + TEC TEC MGP_AJ_T0081138.1 MGP_AJ_G0031473.1 mouse_genomes_project 6 146096479 146116086 + MGP_AJ_P0081138 Klhl42 protein_coding protein_coding MGP_AJ_T0081139.1 MGP_AJ_G0031473.1 mouse_genomes_project 6 146111045 146113820 + Klhl42 protein_coding processed_transcript MGP_AJ_T0081140.1 MGP_AJ_G0031473.1 mouse_genomes_project 6 146113740 146116408 + MGP_AJ_P0081140 Klhl42 protein_coding nonsense_mediated_decay MGP_AJ_T0101396.1 MGP_AJ_G0039362.1 mouse_genomes_project 6 147627541 147627678 - Gm23456 snoRNA snoRNA MGP_AJ_T0000207.1 MGP_AJ_G0000155.1 mouse_genomes_project 6 68000684 68000989 - MGP_AJ_P0000207 Igkv8-27 IG_V_gene IG_V_gene MGP_AJ_T0000208.1 MGP_AJ_G0000155.1 mouse_genomes_project 6 68000684 68001000 - MGP_AJ_P0000208 Igkv8-27 IG_V_gene IG_V_gene MGP_AJ_T0015332.1 MGP_AJ_G0013427.1 mouse_genomes_project 6 45730980 45731310 - processed_pseudogene processed_pseudogene MGP_AJ_T0079790.1 MGP_AJ_G0031166.1 mouse_genomes_project 6 118037203 118049831 + Rad52 protein_coding processed_transcript MGP_AJ_T0079791.1 MGP_AJ_G0031166.1 mouse_genomes_project 6 118037208 118058038 + MGP_AJ_P0079791 Rad52 protein_coding protein_coding MGP_AJ_T0079792.1 MGP_AJ_G0031166.1 mouse_genomes_project 6 118037208 118058043 + MGP_AJ_P0079792 Rad52 protein_coding nonsense_mediated_decay MGP_AJ_T0079793.1 MGP_AJ_G0031166.1 mouse_genomes_project 6 118037210 118048220 + Rad52 protein_coding retained_intron MGP_AJ_T0079794.1 MGP_AJ_G0031166.1 mouse_genomes_project 6 118037210 118047593 + Rad52 protein_coding processed_transcript MGP_AJ_T0079795.1 MGP_AJ_G0031166.1 mouse_genomes_project 6 118037233 118056606 + Rad52 protein_coding retained_intron MGP_AJ_T0079796.1 MGP_AJ_G0031166.1 mouse_genomes_project 6 118037239 118054459 + Rad52 protein_coding processed_transcript MGP_AJ_T0079797.1 MGP_AJ_G0031166.1 mouse_genomes_project 6 118037239 118054459 + Rad52 protein_coding processed_transcript MGP_AJ_T0079798.1 MGP_AJ_G0031166.1 mouse_genomes_project 6 118037244 118056104 + Rad52 protein_coding retained_intron MGP_AJ_T0079799.1 MGP_AJ_G0031166.1 mouse_genomes_project 6 118037281 118058038 + MGP_AJ_P0079799 Rad52 protein_coding protein_coding MGP_AJ_T0079800.1 MGP_AJ_G0031166.1 mouse_genomes_project 6 118047733 118048714 + Rad52 protein_coding retained_intron MGP_AJ_T0079801.1 MGP_AJ_G0031166.1 mouse_genomes_project 6 118048446 118054077 + Rad52 protein_coding retained_intron MGP_AJ_T0079802.1 MGP_AJ_G0031166.1 mouse_genomes_project 6 118049747 118054222 + Rad52 protein_coding retained_intron MGP_AJ_T0079803.1 MGP_AJ_G0031166.1 mouse_genomes_project 6 118053372 118056880 + Rad52 protein_coding retained_intron MGP_AJ_T0101386.1 MGP_AJ_G0039352.1 mouse_genomes_project 6 123205464 123205736 + Gm23547 snoRNA snoRNA MGP_AJ_T0100115.1 MGP_AJ_G0038081.1 mouse_genomes_project 6 118284934 118285036 - Gm25327 snRNA snRNA MGP_AJ_T0078903.1 MGP_AJ_G0030989.1 mouse_genomes_project 6 87723393 87899098 + MGP_AJ_P0078903 Vmn1r41 protein_coding protein_coding MGP_AJ_T0076777.1 MGP_AJ_G0030506.1 mouse_genomes_project 6 26702607 26808905 + MGP_AJ_P0076777 Nrf1 protein_coding protein_coding MGP_AJ_T0076778.1 MGP_AJ_G0030506.1 mouse_genomes_project 6 26702610 26752191 + MGP_AJ_P0076778 Nrf1 protein_coding protein_coding MGP_AJ_T0076779.1 MGP_AJ_G0030506.1 mouse_genomes_project 6 26702621 26808628 + MGP_AJ_P0076779 Nrf1 protein_coding protein_coding MGP_AJ_T0076780.1 MGP_AJ_G0030506.1 mouse_genomes_project 6 26702648 26752524 + Nrf1 protein_coding retained_intron MGP_AJ_T0076781.1 MGP_AJ_G0030506.1 mouse_genomes_project 6 26702650 26799490 + MGP_AJ_P0076781 Nrf1 protein_coding protein_coding MGP_AJ_T0076782.1 MGP_AJ_G0030506.1 mouse_genomes_project 6 26702661 26748968 + MGP_AJ_P0076782 Nrf1 protein_coding protein_coding MGP_AJ_T0076783.1 MGP_AJ_G0030506.1 mouse_genomes_project 6 26702664 26807959 + MGP_AJ_P0076783 Nrf1 protein_coding protein_coding MGP_AJ_T0076784.1 MGP_AJ_G0030506.1 mouse_genomes_project 6 26702686 26807954 + MGP_AJ_P0076784 Nrf1 protein_coding protein_coding MGP_AJ_T0076785.1 MGP_AJ_G0030506.1 mouse_genomes_project 6 26702691 26799827 + MGP_AJ_P0076785 Nrf1 protein_coding protein_coding MGP_AJ_T0076786.1 MGP_AJ_G0030506.1 mouse_genomes_project 6 26702691 26784771 + MGP_AJ_P0076786 Nrf1 protein_coding protein_coding MGP_AJ_T0076787.1 MGP_AJ_G0030506.1 mouse_genomes_project 6 26702770 26743685 + MGP_AJ_P0076787 Nrf1 protein_coding protein_coding MGP_AJ_T0076788.1 MGP_AJ_G0030506.1 mouse_genomes_project 6 26730495 26784375 + MGP_AJ_P0076788 Nrf1 protein_coding protein_coding MGP_AJ_T0076789.1 MGP_AJ_G0030506.1 mouse_genomes_project 6 26743535 26799485 + MGP_AJ_P0076789 Nrf1 protein_coding protein_coding MGP_AJ_T0076790.1 MGP_AJ_G0030506.1 mouse_genomes_project 6 26743541 26799485 + MGP_AJ_P0076790 Nrf1 protein_coding protein_coding MGP_AJ_T0076791.1 MGP_AJ_G0030506.1 mouse_genomes_project 6 26743541 26784019 + MGP_AJ_P0076791 Nrf1 protein_coding protein_coding MGP_AJ_T0076792.1 MGP_AJ_G0030506.1 mouse_genomes_project 6 26743541 26784019 + MGP_AJ_P0076792 Nrf1 protein_coding protein_coding MGP_AJ_T0076793.1 MGP_AJ_G0030506.1 mouse_genomes_project 6 26743541 26807110 + MGP_AJ_P0076793 Nrf1 protein_coding protein_coding MGP_AJ_T0076794.1 MGP_AJ_G0030506.1 mouse_genomes_project 6 26743580 26744645 + Nrf1 protein_coding retained_intron MGP_AJ_T0076795.1 MGP_AJ_G0030506.1 mouse_genomes_project 6 26751398 26770073 + Nrf1 protein_coding processed_transcript MGP_AJ_T0076796.1 MGP_AJ_G0030506.1 mouse_genomes_project 6 26770061 26795534 + MGP_AJ_P0076796 Nrf1 protein_coding protein_coding MGP_AJ_T0080036.1 MGP_AJ_G0031219.1 mouse_genomes_project 6 122217284 122238547 - MGP_AJ_P0080036 protein_coding protein_coding MGP_AJ_T0018309.1 MGP_AJ_G0015625.1 mouse_genomes_project 6 123753946 123775821 + processed_transcript antisense MGP_AJ_T0018310.1 MGP_AJ_G0015625.1 mouse_genomes_project 6 123753995 123754999 + processed_transcript retained_intron MGP_AJ_T0018311.1 MGP_AJ_G0015625.1 mouse_genomes_project 6 123754015 123758957 + processed_transcript antisense MGP_AJ_T0018312.1 MGP_AJ_G0015625.1 mouse_genomes_project 6 123754089 123761941 + processed_transcript antisense MGP_AJ_T0078288.1 MGP_AJ_G0030878.1 mouse_genomes_project 6 80819656 80822193 - MGP_AJ_P0078288 Dok1 protein_coding protein_coding MGP_AJ_T0078289.1 MGP_AJ_G0030878.1 mouse_genomes_project 6 80819662 80822190 - MGP_AJ_P0078289 Dok1 protein_coding nonsense_mediated_decay MGP_AJ_T0078290.1 MGP_AJ_G0030878.1 mouse_genomes_project 6 80820572 80821283 - MGP_AJ_P0078290 Dok1 protein_coding protein_coding MGP_AJ_T0015386.1 MGP_AJ_G0013481.1 mouse_genomes_project 6 62293849 62295250 - processed_pseudogene processed_pseudogene MGP_AJ_T0005104.1 MGP_AJ_G0004355.1 mouse_genomes_project 6 134701595 134711653 + Gm14330 antisense antisense MGP_AJ_T0015633.1 MGP_AJ_G0013728.1 mouse_genomes_project 6 131045488 131045705 - processed_pseudogene processed_pseudogene MGP_AJ_T0000145.1 MGP_AJ_G0000110.1 mouse_genomes_project 6 65147922 65148409 - MGP_AJ_P0000145 Igkv9-123 IG_V_gene IG_V_gene MGP_AJ_T0080481.1 MGP_AJ_G0031307.1 mouse_genomes_project 6 127431421 127475382 - MGP_AJ_P0080481 BC035044 protein_coding protein_coding MGP_AJ_T0078111.1 MGP_AJ_G0030838.1 mouse_genomes_project 6 69926632 69954984 - MGP_AJ_P0078111 Atoh8 protein_coding nonsense_mediated_decay MGP_AJ_T0078112.1 MGP_AJ_G0030838.1 mouse_genomes_project 6 69926632 69956024 - MGP_AJ_P0078112 Atoh8 protein_coding protein_coding MGP_AJ_T0078113.1 MGP_AJ_G0030838.1 mouse_genomes_project 6 69944180 69955677 - Atoh8 protein_coding processed_transcript MGP_AJ_T0000164.1 MGP_AJ_G0000124.1 mouse_genomes_project 6 66009697 66010165 - MGP_AJ_P0000164 Igkv10-94 IG_V_gene IG_V_gene MGP_AJ_T0015270.1 MGP_AJ_G0013365.1 mouse_genomes_project 6 16443103 16444069 + processed_pseudogene processed_pseudogene MGP_AJ_T0008782.1 MGP_AJ_G0007090.1 mouse_genomes_project 6 142624251 142683036 - 1700060C16Rik lincRNA lincRNA MGP_AJ_T0002074.1 MGP_AJ_G0001987.1 mouse_genomes_project 6 88336654 88339775 + TEC TEC MGP_AJ_T0015331.1 MGP_AJ_G0013426.1 mouse_genomes_project 6 45609117 45610556 + processed_pseudogene processed_pseudogene MGP_AJ_T0002096.1 MGP_AJ_G0002009.1 mouse_genomes_project 6 98239160 98239552 - TEC TEC MGP_AJ_T0079108.1 MGP_AJ_G0031041.1 mouse_genomes_project 6 95193555 95233097 - MGP_AJ_P0079108 Eogt protein_coding protein_coding MGP_AJ_T0079109.1 MGP_AJ_G0031041.1 mouse_genomes_project 6 95195507 95232798 - Eogt protein_coding processed_transcript MGP_AJ_T0079110.1 MGP_AJ_G0031041.1 mouse_genomes_project 6 95195536 95232842 - MGP_AJ_P0079110 Eogt protein_coding protein_coding MGP_AJ_T0079111.1 MGP_AJ_G0031041.1 mouse_genomes_project 6 95195721 95202294 - Eogt protein_coding processed_transcript MGP_AJ_T0079112.1 MGP_AJ_G0031041.1 mouse_genomes_project 6 95218935 95231699 - MGP_AJ_P0079112 Eogt protein_coding protein_coding MGP_AJ_T0079113.1 MGP_AJ_G0031041.1 mouse_genomes_project 6 95227893 95231709 - MGP_AJ_P0079113 Eogt protein_coding protein_coding MGP_AJ_T0079114.1 MGP_AJ_G0031041.1 mouse_genomes_project 6 95229184 95232775 - MGP_AJ_P0079114 Eogt protein_coding protein_coding MGP_AJ_T0079115.1 MGP_AJ_G0031041.1 mouse_genomes_project 6 95229238 95232839 - MGP_AJ_P0079115 Eogt protein_coding protein_coding MGP_AJ_T0008757.1 MGP_AJ_G0007075.1 mouse_genomes_project 6 133441051 133443486 - Gm43949 lincRNA lincRNA MGP_AJ_T0077795.1 MGP_AJ_G0030748.1 mouse_genomes_project 6 53553634 53557008 - MGP_AJ_P0077795 Lsm5 protein_coding protein_coding MGP_AJ_T0077796.1 MGP_AJ_G0030748.1 mouse_genomes_project 6 53553641 53557050 - MGP_AJ_P0077796 Lsm5 protein_coding protein_coding MGP_AJ_T0077797.1 MGP_AJ_G0030748.1 mouse_genomes_project 6 53553643 53557017 - Lsm5 protein_coding retained_intron MGP_AJ_T0077798.1 MGP_AJ_G0030748.1 mouse_genomes_project 6 53553701 53556996 - MGP_AJ_P0077798 Lsm5 protein_coding nonsense_mediated_decay MGP_AJ_T0078751.1 MGP_AJ_G0030966.1 mouse_genomes_project 6 85738696 85765484 - MGP_AJ_P0078751 Isy1 protein_coding protein_coding MGP_AJ_T0078752.1 MGP_AJ_G0030966.1 mouse_genomes_project 6 85747195 85765424 - MGP_AJ_P0078752 Isy1 protein_coding nonsense_mediated_decay MGP_AJ_T0078753.1 MGP_AJ_G0030966.1 mouse_genomes_project 6 85747265 85748242 - Isy1 protein_coding retained_intron MGP_AJ_T0078754.1 MGP_AJ_G0030966.1 mouse_genomes_project 6 85748079 85765386 - MGP_AJ_P0078754 Isy1 protein_coding nonsense_mediated_decay MGP_AJ_T0078755.1 MGP_AJ_G0030966.1 mouse_genomes_project 6 85750943 85765442 - Isy1 protein_coding retained_intron MGP_AJ_T0078756.1 MGP_AJ_G0030966.1 mouse_genomes_project 6 85752722 85765399 - Isy1 protein_coding retained_intron MGP_AJ_T0078757.1 MGP_AJ_G0030966.1 mouse_genomes_project 6 85753329 85765433 - MGP_AJ_P0078757 Isy1 protein_coding protein_coding MGP_AJ_T0078758.1 MGP_AJ_G0030966.1 mouse_genomes_project 6 85760124 85765442 - Isy1 protein_coding retained_intron MGP_AJ_T0077150.1 MGP_AJ_G0030572.1 mouse_genomes_project 6 36305719 36320289 + MGP_AJ_P0077150 Adck2 protein_coding protein_coding MGP_AJ_T0077151.1 MGP_AJ_G0030572.1 mouse_genomes_project 6 36305805 36315590 + MGP_AJ_P0077151 Adck2 protein_coding protein_coding MGP_AJ_T0077152.1 MGP_AJ_G0030572.1 mouse_genomes_project 6 36305810 36319272 + MGP_AJ_P0077152 Adck2 protein_coding protein_coding MGP_AJ_T0077153.1 MGP_AJ_G0030572.1 mouse_genomes_project 6 36306830 36311800 + Adck2 protein_coding retained_intron MGP_AJ_T0077154.1 MGP_AJ_G0030572.1 mouse_genomes_project 6 36306879 36320288 + MGP_AJ_P0077154 Adck2 protein_coding unknown_likely_coding MGP_AJ_T0077155.1 MGP_AJ_G0030572.1 mouse_genomes_project 6 36308222 36313794 + MGP_AJ_P0077155 Adck2 protein_coding nonsense_mediated_decay MGP_AJ_T0077156.1 MGP_AJ_G0030572.1 mouse_genomes_project 6 36315472 36317458 + Adck2 protein_coding retained_intron MGP_AJ_T0005040.1 MGP_AJ_G0004303.1 mouse_genomes_project 6 93220066 93223702 - Kbtbd8os antisense antisense MGP_AJ_T0079871.1 MGP_AJ_G0031177.1 mouse_genomes_project 6 118932023 118952552 + MGP_AJ_P0079871 Slc25a18 protein_coding protein_coding MGP_AJ_T0005090.1 MGP_AJ_G0004343.1 mouse_genomes_project 6 126899476 126902054 + Gm26770 antisense antisense MGP_AJ_T0077910.1 MGP_AJ_G0030793.1 mouse_genomes_project 6 58268184 59455796 + MGP_AJ_P0077910 Ccser1 protein_coding protein_coding MGP_AJ_T0077911.1 MGP_AJ_G0030793.1 mouse_genomes_project 6 58268397 58404411 + Ccser1 protein_coding retained_intron MGP_AJ_T0077912.1 MGP_AJ_G0030793.1 mouse_genomes_project 6 58268398 58404042 + Ccser1 protein_coding retained_intron MGP_AJ_T0077913.1 MGP_AJ_G0030793.1 mouse_genomes_project 6 58402288 59453198 + MGP_AJ_P0077913 Ccser1 protein_coding protein_coding MGP_AJ_T0077914.1 MGP_AJ_G0030793.1 mouse_genomes_project 6 58405234 58647872 + Ccser1 protein_coding retained_intron MGP_AJ_T0077915.1 MGP_AJ_G0030793.1 mouse_genomes_project 6 58411837 58647634 + Ccser1 protein_coding processed_transcript MGP_AJ_T0077916.1 MGP_AJ_G0030793.1 mouse_genomes_project 6 58464764 58888917 + MGP_AJ_P0077916 Ccser1 protein_coding protein_coding MGP_AJ_T0077917.1 MGP_AJ_G0030793.1 mouse_genomes_project 6 58464772 58796983 + Ccser1 protein_coding retained_intron MGP_AJ_T0077918.1 MGP_AJ_G0030793.1 mouse_genomes_project 6 58464807 58556069 + Ccser1 protein_coding processed_transcript MGP_AJ_T0077919.1 MGP_AJ_G0030793.1 mouse_genomes_project 6 58647535 58897781 + MGP_AJ_P0077919 Ccser1 protein_coding protein_coding MGP_AJ_T0077920.1 MGP_AJ_G0030793.1 mouse_genomes_project 6 58862193 58897320 + Ccser1 protein_coding processed_transcript MGP_AJ_T0080664.1 MGP_AJ_G0031384.1 mouse_genomes_project 6 133665705 133694326 + MGP_AJ_P0080664 Crebl2 protein_coding protein_coding MGP_AJ_T0080665.1 MGP_AJ_G0031384.1 mouse_genomes_project 6 133665779 133684986 + Crebl2 protein_coding retained_intron MGP_AJ_T0080666.1 MGP_AJ_G0031384.1 mouse_genomes_project 6 133665806 133691561 + MGP_AJ_P0080666 Crebl2 protein_coding protein_coding MGP_AJ_T0080667.1 MGP_AJ_G0031384.1 mouse_genomes_project 6 133686568 133689990 + Crebl2 protein_coding retained_intron MGP_AJ_T0015524.1 MGP_AJ_G0013619.1 mouse_genomes_project 6 105565445 105566094 + processed_pseudogene processed_pseudogene MGP_AJ_T0078857.1 MGP_AJ_G0030982.1 mouse_genomes_project 6 86830886 86846547 - MGP_AJ_P0078857 Mcm2 protein_coding protein_coding MGP_AJ_T0078858.1 MGP_AJ_G0030982.1 mouse_genomes_project 6 86835946 86839440 - Mcm2 protein_coding retained_intron MGP_AJ_T0078859.1 MGP_AJ_G0030982.1 mouse_genomes_project 6 86837406 86840710 - MGP_AJ_P0078859 Mcm2 protein_coding nonsense_mediated_decay MGP_AJ_T0078860.1 MGP_AJ_G0030982.1 mouse_genomes_project 6 86840566 86846468 - Mcm2 protein_coding processed_transcript MGP_AJ_T0078861.1 MGP_AJ_G0030982.1 mouse_genomes_project 6 86840677 86846455 - MGP_AJ_P0078861 Mcm2 protein_coding nonsense_mediated_decay MGP_AJ_T0078862.1 MGP_AJ_G0030982.1 mouse_genomes_project 6 86840693 86841252 - Mcm2 protein_coding retained_intron MGP_AJ_T0078863.1 MGP_AJ_G0030982.1 mouse_genomes_project 6 86844599 86846444 - Mcm2 protein_coding retained_intron MGP_AJ_T0077123.1 MGP_AJ_G0030568.1 mouse_genomes_project 6 36061630 36104681 - MGP_AJ_P0077123 Slc37a3 protein_coding protein_coding MGP_AJ_T0077124.1 MGP_AJ_G0030568.1 mouse_genomes_project 6 36062842 36104678 - MGP_AJ_P0077124 Slc37a3 protein_coding nonsense_mediated_decay MGP_AJ_T0077125.1 MGP_AJ_G0030568.1 mouse_genomes_project 6 36062843 36074876 - Slc37a3 protein_coding processed_transcript MGP_AJ_T0077126.1 MGP_AJ_G0030568.1 mouse_genomes_project 6 36062846 36099936 - MGP_AJ_P0077126 Slc37a3 protein_coding nonsense_mediated_decay MGP_AJ_T0077127.1 MGP_AJ_G0030568.1 mouse_genomes_project 6 36063463 36074268 - Slc37a3 protein_coding processed_transcript MGP_AJ_T0077128.1 MGP_AJ_G0030568.1 mouse_genomes_project 6 36070799 36074240 - Slc37a3 protein_coding retained_intron MGP_AJ_T0077129.1 MGP_AJ_G0030568.1 mouse_genomes_project 6 36081866 36104665 - MGP_AJ_P0077129 Slc37a3 protein_coding protein_coding MGP_AJ_T0077130.1 MGP_AJ_G0030568.1 mouse_genomes_project 6 36084348 36104678 - MGP_AJ_P0077130 Slc37a3 protein_coding protein_coding MGP_AJ_T0077131.1 MGP_AJ_G0030568.1 mouse_genomes_project 6 36086783 36104653 - MGP_AJ_P0077131 Slc37a3 protein_coding protein_coding MGP_AJ_T0077132.1 MGP_AJ_G0030568.1 mouse_genomes_project 6 36086808 36104642 - MGP_AJ_P0077132 Slc37a3 protein_coding protein_coding MGP_AJ_T0077133.1 MGP_AJ_G0030568.1 mouse_genomes_project 6 36086810 36104668 - MGP_AJ_P0077133 Slc37a3 protein_coding protein_coding MGP_AJ_T0077134.1 MGP_AJ_G0030568.1 mouse_genomes_project 6 36093601 36104663 - MGP_AJ_P0077134 Slc37a3 protein_coding protein_coding MGP_AJ_T0077135.1 MGP_AJ_G0030568.1 mouse_genomes_project 6 36094892 36104645 - Slc37a3 protein_coding processed_transcript MGP_AJ_T0077136.1 MGP_AJ_G0030568.1 mouse_genomes_project 6 36094901 36104624 - Slc37a3 protein_coding processed_transcript MGP_AJ_T0002724.1 MGP_AJ_G0002596.1 mouse_genomes_project 6 37834086 37834488 + TR_V_pseudogene TR_V_pseudogene MGP_AJ_T0001938.1 MGP_AJ_G0001851.1 mouse_genomes_project 6 25193681 25196594 + TEC TEC MGP_AJ_T0015280.1 MGP_AJ_G0013375.1 mouse_genomes_project 6 21234061 21234770 + processed_pseudogene processed_pseudogene MGP_AJ_T0015418.1 MGP_AJ_G0013513.1 mouse_genomes_project 6 65319868 65320545 - processed_pseudogene processed_pseudogene MGP_AJ_T0002040.1 MGP_AJ_G0001953.1 mouse_genomes_project 6 81108179 81110967 - TEC TEC MGP_AJ_T0002559.1 MGP_AJ_G0002461.1 mouse_genomes_project 6 38295549 38295597 + MGP_AJ_P0002559 Trbj1-2 TR_J_gene TR_J_gene MGP_AJ_T0004961.1 MGP_AJ_G0004254.1 mouse_genomes_project 6 51326350 51335812 - Gm44026 antisense antisense MGP_AJ_T0002084.1 MGP_AJ_G0001997.1 mouse_genomes_project 6 89935159 89936231 - TEC TEC MGP_AJ_T0080529.1 MGP_AJ_G0031321.1 mouse_genomes_project 6 128087322 128094119 + MGP_AJ_P0080529 Tmem52b protein_coding protein_coding MGP_AJ_T0080530.1 MGP_AJ_G0031321.1 mouse_genomes_project 6 128087380 128092351 + MGP_AJ_P0080530 Tmem52b protein_coding protein_coding MGP_AJ_T0080531.1 MGP_AJ_G0031321.1 mouse_genomes_project 6 128090698 128092382 + Tmem52b protein_coding retained_intron MGP_AJ_T0080532.1 MGP_AJ_G0031321.1 mouse_genomes_project 6 128091448 128092432 + Tmem52b protein_coding retained_intron MGP_AJ_T0076334.1 MGP_AJ_G0030421.1 mouse_genomes_project 6 5009783 5013010 - MGP_AJ_P0076334 Rpa3 protein_coding protein_coding MGP_AJ_T0076335.1 MGP_AJ_G0030421.1 mouse_genomes_project 6 5011069 5012977 - Rpa3 protein_coding retained_intron MGP_AJ_T0015560.1 MGP_AJ_G0013655.1 mouse_genomes_project 6 116106275 116107061 + processed_pseudogene processed_pseudogene MGP_AJ_T0099080.1 MGP_AJ_G0037053.1 mouse_genomes_project 6 123671408 123671689 - Gm28967 sense_intronic sense_intronic MGP_AJ_T0011651.1 MGP_AJ_G0009773.1 mouse_genomes_project 6 49098421 49098799 + Gm27985 misc_RNA misc_RNA MGP_AJ_T0077137.1 MGP_AJ_G0030569.1 mouse_genomes_project 6 36108565 36118775 + MGP_AJ_P0077137 Rab19 protein_coding protein_coding MGP_AJ_T0000133.1 MGP_AJ_G0000101.1 mouse_genomes_project 6 64682148 64682924 + MGP_AJ_P0000133 Igkv1-133 IG_V_gene IG_V_gene MGP_AJ_T0079507.1 MGP_AJ_G0031112.1 mouse_genomes_project 6 112945399 112959832 - Vgll4 protein_coding processed_transcript MGP_AJ_T0079508.1 MGP_AJ_G0031112.1 mouse_genomes_project 6 112946195 113006968 - MGP_AJ_P0079508 Vgll4 protein_coding protein_coding MGP_AJ_T0079509.1 MGP_AJ_G0031112.1 mouse_genomes_project 6 112946962 112959745 - Vgll4 protein_coding processed_transcript MGP_AJ_T0079510.1 MGP_AJ_G0031112.1 mouse_genomes_project 6 112946962 112949529 - Vgll4 protein_coding processed_transcript MGP_AJ_T0079511.1 MGP_AJ_G0031112.1 mouse_genomes_project 6 112947092 113055538 - MGP_AJ_P0079511 Vgll4 protein_coding protein_coding MGP_AJ_T0079512.1 MGP_AJ_G0031112.1 mouse_genomes_project 6 112947535 113056352 - MGP_AJ_P0079512 Vgll4 protein_coding protein_coding MGP_AJ_T0079513.1 MGP_AJ_G0031112.1 mouse_genomes_project 6 113005200 113006963 - Vgll4 protein_coding retained_intron MGP_AJ_T0004978.1 MGP_AJ_G0004268.1 mouse_genomes_project 6 70430520 70436397 + Gm15402 antisense antisense MGP_AJ_T0010756.1 MGP_AJ_G0008878.1 mouse_genomes_project 6 27744391 27744462 - Mir29b-1 miRNA miRNA MGP_AJ_T0080250.1 MGP_AJ_G0031257.1 mouse_genomes_project 6 123629853 123646421 + Iffo1 protein_coding retained_intron MGP_AJ_T0080251.1 MGP_AJ_G0031257.1 mouse_genomes_project 6 123629853 123646421 + MGP_AJ_P0080251 Iffo1 protein_coding nonsense_mediated_decay MGP_AJ_T0080252.1 MGP_AJ_G0031257.1 mouse_genomes_project 6 123629853 123646421 + MGP_AJ_P0080252 Iffo1 protein_coding protein_coding MGP_AJ_T0080253.1 MGP_AJ_G0031257.1 mouse_genomes_project 6 123629863 123646415 + MGP_AJ_P0080253 Iffo1 protein_coding protein_coding MGP_AJ_T0080254.1 MGP_AJ_G0031257.1 mouse_genomes_project 6 123629878 123646415 + Iffo1 protein_coding retained_intron MGP_AJ_T0080255.1 MGP_AJ_G0031257.1 mouse_genomes_project 6 123630413 123646415 + MGP_AJ_P0080255 Iffo1 protein_coding protein_coding MGP_AJ_T0080256.1 MGP_AJ_G0031257.1 mouse_genomes_project 6 123630638 123646415 + Iffo1 protein_coding retained_intron MGP_AJ_T0080257.1 MGP_AJ_G0031257.1 mouse_genomes_project 6 123633622 123636158 + Iffo1 protein_coding processed_transcript MGP_AJ_T0080258.1 MGP_AJ_G0031257.1 mouse_genomes_project 6 123634143 123637401 + Iffo1 protein_coding retained_intron MGP_AJ_T0080259.1 MGP_AJ_G0031257.1 mouse_genomes_project 6 123638018 123645696 + Iffo1 protein_coding retained_intron MGP_AJ_T0079835.1 MGP_AJ_G0031171.1 mouse_genomes_project 6 118467658 118499914 - MGP_AJ_P0079835 Ccdc77 protein_coding protein_coding MGP_AJ_T0079836.1 MGP_AJ_G0031171.1 mouse_genomes_project 6 118467658 118507423 - MGP_AJ_P0079836 Ccdc77 protein_coding nonsense_mediated_decay MGP_AJ_T0079837.1 MGP_AJ_G0031171.1 mouse_genomes_project 6 118468370 118499957 - MGP_AJ_P0079837 Ccdc77 protein_coding protein_coding MGP_AJ_T0079838.1 MGP_AJ_G0031171.1 mouse_genomes_project 6 118474535 118499895 - MGP_AJ_P0079838 Ccdc77 protein_coding nonsense_mediated_decay MGP_AJ_T0079839.1 MGP_AJ_G0031171.1 mouse_genomes_project 6 118477502 118499852 - MGP_AJ_P0079839 Ccdc77 protein_coding protein_coding MGP_AJ_T0079840.1 MGP_AJ_G0031171.1 mouse_genomes_project 6 118477535 118499825 - MGP_AJ_P0079840 Ccdc77 protein_coding nonsense_mediated_decay MGP_AJ_T0079841.1 MGP_AJ_G0031171.1 mouse_genomes_project 6 118480494 118499862 - Ccdc77 protein_coding retained_intron MGP_AJ_T0079842.1 MGP_AJ_G0031171.1 mouse_genomes_project 6 118488023 118492892 - Ccdc77 protein_coding retained_intron MGP_AJ_T0079843.1 MGP_AJ_G0031171.1 mouse_genomes_project 6 118492709 118507405 - MGP_AJ_P0079843 Ccdc77 protein_coding protein_coding MGP_AJ_T0079844.1 MGP_AJ_G0031171.1 mouse_genomes_project 6 118496146 118499852 - Ccdc77 protein_coding retained_intron MGP_AJ_T0080395.1 MGP_AJ_G0031286.1 mouse_genomes_project 6 126082782 126151846 + MGP_AJ_P0080395 Cracr2a protein_coding protein_coding MGP_AJ_T0080396.1 MGP_AJ_G0031286.1 mouse_genomes_project 6 126099419 126151751 + MGP_AJ_P0080396 Cracr2a protein_coding protein_coding MGP_AJ_T0015539.1 MGP_AJ_G0013634.1 mouse_genomes_project 6 111059066 111059541 + processed_pseudogene processed_pseudogene MGP_AJ_T0015600.1 MGP_AJ_G0013695.1 mouse_genomes_project 6 125805934 125806381 - processed_pseudogene processed_pseudogene MGP_AJ_T0101327.1 MGP_AJ_G0039293.1 mouse_genomes_project 6 21523375 21523506 - Gm22267 snoRNA snoRNA MGP_AJ_T0010754.1 MGP_AJ_G0008876.1 mouse_genomes_project 6 27416748 27416846 + Mir335 miRNA miRNA MGP_AJ_T0101370.1 MGP_AJ_G0039336.1 mouse_genomes_project 6 103338370 103338509 + Gm23339 snoRNA snoRNA MGP_AJ_T0076227.1 MGP_AJ_G0030398.1 mouse_genomes_project 6 720142 724688 + MGP_AJ_P0076227 Gng11 protein_coding protein_coding MGP_AJ_T0078911.1 MGP_AJ_G0030995.1 mouse_genomes_project 6 88017170 88021585 + MGP_AJ_P0078911 protein_coding protein_coding MGP_AJ_T0077504.1 MGP_AJ_G0030682.1 mouse_genomes_project 6 45538550 45546650 + MGP_AJ_P0077504 Gimap5 protein_coding protein_coding MGP_AJ_T0077505.1 MGP_AJ_G0030682.1 mouse_genomes_project 6 45538551 45539842 + Gimap5 protein_coding processed_transcript MGP_AJ_T0077506.1 MGP_AJ_G0030682.1 mouse_genomes_project 6 45538552 45539869 + Gimap5 protein_coding processed_transcript MGP_AJ_T0077507.1 MGP_AJ_G0030682.1 mouse_genomes_project 6 45538652 45540983 + Gimap5 protein_coding retained_intron MGP_AJ_T0015631.1 MGP_AJ_G0013726.1 mouse_genomes_project 6 130746529 130746980 - processed_pseudogene processed_pseudogene MGP_AJ_T0079427.1 MGP_AJ_G0031098.1 mouse_genomes_project 6 111591737 111608507 - MGP_AJ_P0079427 Emc3 protein_coding protein_coding MGP_AJ_T0079428.1 MGP_AJ_G0031098.1 mouse_genomes_project 6 111596655 111597773 - Emc3 protein_coding retained_intron MGP_AJ_T0079429.1 MGP_AJ_G0031098.1 mouse_genomes_project 6 111607257 111608473 - Emc3 protein_coding retained_intron MGP_AJ_T0001954.1 MGP_AJ_G0001867.1 mouse_genomes_project 6 36971451 36974278 + TEC TEC MGP_AJ_T0102711.1 MGP_AJ_G0040453.1 mouse_genomes_project 6 122332595 122339416 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0000141.1 MGP_AJ_G0000107.1 mouse_genomes_project 6 65108457 65108937 + MGP_AJ_P0000141 Igkv11-125 IG_V_gene IG_V_gene MGP_AJ_T0000142.1 MGP_AJ_G0000107.1 mouse_genomes_project 6 65108457 65108937 + MGP_AJ_P0000142 Igkv11-125 IG_V_gene IG_V_gene MGP_AJ_T0015655.1 MGP_AJ_G0013750.1 mouse_genomes_project 6 138983455 138984645 - processed_pseudogene processed_pseudogene MGP_AJ_T0010742.1 MGP_AJ_G0008864.1 mouse_genomes_project 6 12051077 12051188 + Gm25470 miRNA miRNA MGP_AJ_T0008567.1 MGP_AJ_G0006930.1 mouse_genomes_project 6 31222996 31230853 + Gm13860 lincRNA lincRNA MGP_AJ_T0078924.1 MGP_AJ_G0031004.1 mouse_genomes_project 6 88407488 88422921 + MGP_AJ_P0078924 Zxdc protein_coding protein_coding MGP_AJ_T0078925.1 MGP_AJ_G0031004.1 mouse_genomes_project 6 88407490 88441326 + MGP_AJ_P0078925 Zxdc protein_coding protein_coding MGP_AJ_T0078926.1 MGP_AJ_G0031004.1 mouse_genomes_project 6 88407604 88422052 + MGP_AJ_P0078926 Zxdc protein_coding protein_coding MGP_AJ_T0078927.1 MGP_AJ_G0031004.1 mouse_genomes_project 6 88407609 88420940 + MGP_AJ_P0078927 Zxdc protein_coding protein_coding MGP_AJ_T0078928.1 MGP_AJ_G0031004.1 mouse_genomes_project 6 88407614 88412548 + Zxdc protein_coding retained_intron MGP_AJ_T0015533.1 MGP_AJ_G0013628.1 mouse_genomes_project 6 108445084 108445659 + processed_pseudogene processed_pseudogene MGP_AJ_T0078742.1 MGP_AJ_G0030964.1 mouse_genomes_project 6 85713199 85736207 - MGP_AJ_P0078742 Rab43 protein_coding protein_coding MGP_AJ_T0078743.1 MGP_AJ_G0030964.1 mouse_genomes_project 6 85713199 85734182 - MGP_AJ_P0078743 Rab43 protein_coding protein_coding MGP_AJ_T0078745.1 MGP_AJ_G0030964.1 mouse_genomes_project 6 85713211 85714422 - Rab43 protein_coding processed_transcript MGP_AJ_T0078746.1 MGP_AJ_G0030964.1 mouse_genomes_project 6 85715845 85734185 - Rab43 protein_coding processed_transcript MGP_AJ_T0078747.1 MGP_AJ_G0030964.1 mouse_genomes_project 6 85716498 85736592 - Rab43 protein_coding processed_transcript MGP_AJ_T0078749.1 MGP_AJ_G0030964.1 mouse_genomes_project 6 85717144 85736526 - Rab43 protein_coding processed_transcript MGP_AJ_T0078750.1 MGP_AJ_G0030964.1 mouse_genomes_project 6 85718315 85736207 - MGP_AJ_P0078750 Rab43 protein_coding protein_coding MGP_AJ_T0008666.1 MGP_AJ_G0007002.1 mouse_genomes_project 6 84396687 84397371 - Gm43936 lincRNA lincRNA MGP_AJ_T0002028.1 MGP_AJ_G0001941.1 mouse_genomes_project 6 77789401 77792055 + TEC TEC MGP_AJ_T0077731.1 MGP_AJ_G0030733.1 mouse_genomes_project 6 51547598 51570463 + MGP_AJ_P0077731 Mturn protein_coding protein_coding MGP_AJ_T0077732.1 MGP_AJ_G0030733.1 mouse_genomes_project 6 51547728 51567754 + MGP_AJ_P0077732 Mturn protein_coding protein_coding MGP_AJ_T0077733.1 MGP_AJ_G0030733.1 mouse_genomes_project 6 51547776 51555496 + Mturn protein_coding retained_intron MGP_AJ_T0015568.1 MGP_AJ_G0013663.1 mouse_genomes_project 6 119722009 119722397 + processed_pseudogene processed_pseudogene MGP_AJ_T0015306.1 MGP_AJ_G0013401.1 mouse_genomes_project 6 37278310 37278722 - processed_pseudogene processed_pseudogene MGP_AJ_T0077348.1 MGP_AJ_G0030649.1 mouse_genomes_project 6 40049766 40073507 + MGP_AJ_P0077348 Arhgef5 protein_coding protein_coding MGP_AJ_T0077349.1 MGP_AJ_G0030649.1 mouse_genomes_project 6 40058697 40073506 + MGP_AJ_P0077349 Arhgef5 protein_coding protein_coding MGP_AJ_T0077350.1 MGP_AJ_G0030649.1 mouse_genomes_project 6 40061124 40064107 + Arhgef5 protein_coding retained_intron MGP_AJ_T0077351.1 MGP_AJ_G0030649.1 mouse_genomes_project 6 40061233 40071382 + Arhgef5 protein_coding retained_intron MGP_AJ_T0077352.1 MGP_AJ_G0030649.1 mouse_genomes_project 6 40063643 40073503 + Arhgef5 protein_coding retained_intron MGP_AJ_T0077353.1 MGP_AJ_G0030649.1 mouse_genomes_project 6 40065176 40067753 + Arhgef5 protein_coding retained_intron MGP_AJ_T0077354.1 MGP_AJ_G0030649.1 mouse_genomes_project 6 40066800 40073502 + Arhgef5 protein_coding retained_intron MGP_AJ_T0077355.1 MGP_AJ_G0030649.1 mouse_genomes_project 6 40067068 40068202 + Arhgef5 protein_coding retained_intron MGP_AJ_T0080521.1 MGP_AJ_G0031319.1 mouse_genomes_project 6 128004118 128027263 - MGP_AJ_P0080521 Clec1a protein_coding protein_coding MGP_AJ_T0080522.1 MGP_AJ_G0031319.1 mouse_genomes_project 6 128005167 128027399 - MGP_AJ_P0080522 Clec1a protein_coding protein_coding MGP_AJ_T0080523.1 MGP_AJ_G0031319.1 mouse_genomes_project 6 128005238 128027383 - MGP_AJ_P0080523 Clec1a protein_coding nonsense_mediated_decay MGP_AJ_T0015651.1 MGP_AJ_G0013746.1 mouse_genomes_project 6 135339044 135339438 + processed_pseudogene processed_pseudogene MGP_AJ_T0078915.1 MGP_AJ_G0030998.1 mouse_genomes_project 6 88105724 88112383 + MGP_AJ_P0078915 Vmn1r50 protein_coding protein_coding MGP_AJ_T0078916.1 MGP_AJ_G0030998.1 mouse_genomes_project 6 88111450 88112383 + MGP_AJ_P0078916 Vmn1r50 protein_coding protein_coding MGP_AJ_T0011673.1 MGP_AJ_G0009795.1 mouse_genomes_project 6 140919126 140919341 - Gm22036 misc_RNA misc_RNA MGP_AJ_T0077336.1 MGP_AJ_G0030640.1 mouse_genomes_project 6 39661898 39663312 + MGP_AJ_P0077336 Olfr446 protein_coding protein_coding MGP_AJ_T0008745.1 MGP_AJ_G0007068.1 mouse_genomes_project 6 127132711 127135105 - Gm44009 lincRNA lincRNA MGP_AJ_T0015372.1 MGP_AJ_G0013467.1 mouse_genomes_project 6 59359441 59359750 - processed_pseudogene processed_pseudogene MGP_AJ_T0011625.1 MGP_AJ_G0009747.1 mouse_genomes_project 6 14345140 14345324 + Gm27960 misc_RNA misc_RNA MGP_AJ_T0015284.1 MGP_AJ_G0013379.1 mouse_genomes_project 6 23432191 23432972 + processed_pseudogene processed_pseudogene MGP_AJ_T0015379.1 MGP_AJ_G0013474.1 mouse_genomes_project 6 61139046 61139211 + processed_pseudogene processed_pseudogene MGP_AJ_T0098709.1 MGP_AJ_G0036693.1 mouse_genomes_project 6 85200083 85200195 + n-R5s164 rRNA rRNA MGP_AJ_T0079061.1 MGP_AJ_G0031030.1 mouse_genomes_project 6 90893803 90921162 + MGP_AJ_P0079061 A730049H05Rik protein_coding protein_coding MGP_AJ_T0079062.1 MGP_AJ_G0031030.1 mouse_genomes_project 6 90904951 90924857 + A730049H05Rik protein_coding processed_transcript MGP_AJ_T0004951.1 MGP_AJ_G0004248.1 mouse_genomes_project 6 49008509 49009675 + Gm15050 antisense antisense MGP_AJ_T0008605.1 MGP_AJ_G0006954.1 mouse_genomes_project 6 48195384 48208366 + Gm6559 lincRNA lincRNA MGP_AJ_T0008697.1 MGP_AJ_G0007025.1 mouse_genomes_project 6 98021853 98044208 - Gm44442 lincRNA lincRNA MGP_AJ_T0008698.1 MGP_AJ_G0007025.1 mouse_genomes_project 6 98021854 98025155 - Gm44442 lincRNA lincRNA MGP_AJ_T0015593.1 MGP_AJ_G0013688.1 mouse_genomes_project 6 124839815 124840228 + processed_pseudogene processed_pseudogene MGP_AJ_T0015575.1 MGP_AJ_G0013670.1 mouse_genomes_project 6 120752261 120752555 + processed_pseudogene processed_pseudogene MGP_AJ_T0076345.1 MGP_AJ_G0030424.1 mouse_genomes_project 6 5272212 5351291 + MGP_AJ_P0076345 Glcci1 protein_coding protein_coding MGP_AJ_T0076346.1 MGP_AJ_G0030424.1 mouse_genomes_project 6 5272503 5351294 + MGP_AJ_P0076346 Glcci1 protein_coding protein_coding MGP_AJ_T0076347.1 MGP_AJ_G0030424.1 mouse_genomes_project 6 5273840 5332624 + MGP_AJ_P0076347 Glcci1 protein_coding protein_coding MGP_AJ_T0076348.1 MGP_AJ_G0030424.1 mouse_genomes_project 6 5282118 5347367 + MGP_AJ_P0076348 Glcci1 protein_coding protein_coding MGP_AJ_T0076349.1 MGP_AJ_G0030424.1 mouse_genomes_project 6 5298497 5347815 + MGP_AJ_P0076349 Glcci1 protein_coding protein_coding MGP_AJ_T0076350.1 MGP_AJ_G0030424.1 mouse_genomes_project 6 5332681 5345035 + Glcci1 protein_coding processed_transcript MGP_AJ_T0076549.1 MGP_AJ_G0030457.1 mouse_genomes_project 6 18990425 19040095 - MGP_AJ_P0076549 Fam3c protein_coding protein_coding MGP_AJ_T0076550.1 MGP_AJ_G0030457.1 mouse_genomes_project 6 18991788 19040026 - MGP_AJ_P0076550 Fam3c protein_coding protein_coding MGP_AJ_T0076551.1 MGP_AJ_G0030457.1 mouse_genomes_project 6 18992366 19013361 - Fam3c protein_coding processed_transcript MGP_AJ_T0076552.1 MGP_AJ_G0030457.1 mouse_genomes_project 6 18993233 19040001 - MGP_AJ_P0076552 Fam3c protein_coding nonsense_mediated_decay MGP_AJ_T0076553.1 MGP_AJ_G0030457.1 mouse_genomes_project 6 19006192 19027841 - MGP_AJ_P0076553 Fam3c protein_coding protein_coding MGP_AJ_T0078203.1 MGP_AJ_G0030855.1 mouse_genomes_project 6 70657720 70658862 - MGP_AJ_P0078203 protein_coding protein_coding MGP_AJ_T0078204.1 MGP_AJ_G0030855.1 mouse_genomes_project 6 70657726 70658676 - MGP_AJ_P0078204 protein_coding protein_coding MGP_AJ_T0078205.1 MGP_AJ_G0030855.1 mouse_genomes_project 6 70657734 70659122 - MGP_AJ_P0078205 protein_coding protein_coding MGP_AJ_T0078206.1 MGP_AJ_G0030855.1 mouse_genomes_project 6 70658028 70658773 - MGP_AJ_P0078206 protein_coding protein_coding MGP_AJ_T0015428.1 MGP_AJ_G0013523.1 mouse_genomes_project 6 67937846 67939124 + processed_pseudogene processed_pseudogene MGP_AJ_T0076909.1 MGP_AJ_G0030526.1 mouse_genomes_project 6 29941334 30664972 + MGP_AJ_P0076909 Exoc4 protein_coding protein_coding MGP_AJ_T0076910.1 MGP_AJ_G0030526.1 mouse_genomes_project 6 29941377 30045194 + Exoc4 protein_coding retained_intron MGP_AJ_T0076911.1 MGP_AJ_G0030526.1 mouse_genomes_project 6 29941377 30505955 + Exoc4 protein_coding processed_transcript MGP_AJ_T0076912.1 MGP_AJ_G0030526.1 mouse_genomes_project 6 29941377 30174373 + MGP_AJ_P0076912 Exoc4 protein_coding protein_coding MGP_AJ_T0076913.1 MGP_AJ_G0030526.1 mouse_genomes_project 6 29941381 30275475 + MGP_AJ_P0076913 Exoc4 protein_coding protein_coding MGP_AJ_T0076914.1 MGP_AJ_G0030526.1 mouse_genomes_project 6 29941385 30012742 + Exoc4 protein_coding processed_transcript MGP_AJ_T0076915.1 MGP_AJ_G0030526.1 mouse_genomes_project 6 30026378 30200820 + Exoc4 protein_coding processed_transcript MGP_AJ_T0076916.1 MGP_AJ_G0030526.1 mouse_genomes_project 6 30027440 30042356 + Exoc4 protein_coding retained_intron MGP_AJ_T0076917.1 MGP_AJ_G0030526.1 mouse_genomes_project 6 30394424 30550592 + Exoc4 protein_coding processed_transcript MGP_AJ_T0076918.1 MGP_AJ_G0030526.1 mouse_genomes_project 6 30550531 30562601 + Exoc4 protein_coding processed_transcript MGP_AJ_T0002034.1 MGP_AJ_G0001947.1 mouse_genomes_project 6 78264861 78267576 + TEC TEC MGP_AJ_T0002032.1 MGP_AJ_G0001945.1 mouse_genomes_project 6 78083409 78085071 + TEC TEC MGP_AJ_T0015493.1 MGP_AJ_G0013588.1 mouse_genomes_project 6 92931440 92932430 + processed_pseudogene processed_pseudogene MGP_AJ_T0076998.1 MGP_AJ_G0030540.1 mouse_genomes_project 6 31637213 31669739 - MGP_AJ_P0076998 protein_coding protein_coding MGP_AJ_T0076999.1 MGP_AJ_G0030540.1 mouse_genomes_project 6 31637870 31680130 - MGP_AJ_P0076999 protein_coding protein_coding MGP_AJ_T0077000.1 MGP_AJ_G0030540.1 mouse_genomes_project 6 31639438 31640513 - protein_coding processed_transcript MGP_AJ_T0077001.1 MGP_AJ_G0030540.1 mouse_genomes_project 6 31640371 31647839 - MGP_AJ_P0077001 protein_coding protein_coding MGP_AJ_T0077002.1 MGP_AJ_G0030540.1 mouse_genomes_project 6 31645774 31670794 - MGP_AJ_P0077002 protein_coding protein_coding MGP_AJ_T0100088.1 MGP_AJ_G0038054.1 mouse_genomes_project 6 45079804 45080004 + Gm22122 snRNA snRNA MGP_AJ_T0015479.1 MGP_AJ_G0013574.1 mouse_genomes_project 6 86829943 86830584 + processed_pseudogene processed_pseudogene MGP_AJ_T0008765.1 MGP_AJ_G0007079.1 mouse_genomes_project 6 134483174 134505575 + 4930425L21Rik lincRNA lincRNA MGP_AJ_T0008766.1 MGP_AJ_G0007079.1 mouse_genomes_project 6 134501348 134506707 + 4930425L21Rik lincRNA lincRNA MGP_AJ_T0002021.1 MGP_AJ_G0001934.1 mouse_genomes_project 6 75152081 75157017 - TEC TEC MGP_AJ_T0080577.1 MGP_AJ_G0031341.1 mouse_genomes_project 6 128850018 128862672 - MGP_AJ_P0080577 protein_coding protein_coding MGP_AJ_T0077839.1 MGP_AJ_G0030769.1 mouse_genomes_project 6 54293247 54294365 + MGP_AJ_P0077839 Vmn1r19 protein_coding protein_coding MGP_AJ_T0010753.1 MGP_AJ_G0008875.1 mouse_genomes_project 6 26824664 26824734 - Mir183 miRNA miRNA MGP_AJ_T0078608.1 MGP_AJ_G0030937.1 mouse_genomes_project 6 84090046 84169891 + MGP_AJ_P0078608 Tgfa protein_coding protein_coding MGP_AJ_T0078609.1 MGP_AJ_G0030937.1 mouse_genomes_project 6 84090074 84104722 + Tgfa protein_coding processed_transcript MGP_AJ_T0078610.1 MGP_AJ_G0030937.1 mouse_genomes_project 6 84090213 84166197 + MGP_AJ_P0078610 Tgfa protein_coding protein_coding MGP_AJ_T0078611.1 MGP_AJ_G0030937.1 mouse_genomes_project 6 84106395 84166387 + Tgfa protein_coding processed_transcript MGP_AJ_T0077638.1 MGP_AJ_G0030715.1 mouse_genomes_project 6 49050332 49056235 - MGP_AJ_P0077638 Hoxa7 protein_coding nonsense_mediated_decay MGP_AJ_T0077639.1 MGP_AJ_G0030715.1 mouse_genomes_project 6 49050339 49053347 - MGP_AJ_P0077639 Hoxa7 protein_coding protein_coding MGP_AJ_T0077640.1 MGP_AJ_G0030715.1 mouse_genomes_project 6 49051594 49054553 - MGP_AJ_P0077640 Hoxa7 protein_coding protein_coding MGP_AJ_T0077641.1 MGP_AJ_G0030715.1 mouse_genomes_project 6 49051850 49057698 - MGP_AJ_P0077641 Hoxa7 protein_coding protein_coding MGP_AJ_T0077642.1 MGP_AJ_G0030715.1 mouse_genomes_project 6 49052281 49053294 - MGP_AJ_P0077642 Hoxa7 protein_coding protein_coding MGP_AJ_T0000155.1 MGP_AJ_G0000119.1 mouse_genomes_project 6 65816822 65817288 + MGP_AJ_P0000155 Igkv14-100 IG_V_gene IG_V_gene MGP_AJ_T0000156.1 MGP_AJ_G0000119.1 mouse_genomes_project 6 65816822 65817288 + MGP_AJ_P0000156 Igkv14-100 IG_V_gene IG_V_gene MGP_AJ_T0080302.1 MGP_AJ_G0031265.1 mouse_genomes_project 6 123794505 123801941 - MGP_AJ_P0080302 Ltbr protein_coding protein_coding MGP_AJ_T0080303.1 MGP_AJ_G0031265.1 mouse_genomes_project 6 123797082 123797536 - Ltbr protein_coding retained_intron MGP_AJ_T0080304.1 MGP_AJ_G0031265.1 mouse_genomes_project 6 123800788 123801321 - Ltbr protein_coding retained_intron MGP_AJ_T0011631.1 MGP_AJ_G0009753.1 mouse_genomes_project 6 15698708 15699023 + Gm22718 misc_RNA misc_RNA MGP_AJ_T0080726.1 MGP_AJ_G0031397.1 mouse_genomes_project 6 135234689 135256388 - MGP_AJ_P0080726 E330021D16Rik protein_coding protein_coding MGP_AJ_T0080727.1 MGP_AJ_G0031397.1 mouse_genomes_project 6 135235077 135236193 - MGP_AJ_P0080727 E330021D16Rik protein_coding protein_coding MGP_AJ_T0080728.1 MGP_AJ_G0031397.1 mouse_genomes_project 6 135235857 135256383 - MGP_AJ_P0080728 E330021D16Rik protein_coding protein_coding MGP_AJ_T0077901.1 MGP_AJ_G0030789.1 mouse_genomes_project 6 56439625 56520276 - MGP_AJ_P0077901 Gprin3 protein_coding protein_coding MGP_AJ_T0018299.1 MGP_AJ_G0015620.1 mouse_genomes_project 6 106729409 106731887 + Gm17055 processed_transcript lincRNA MGP_AJ_T0018300.1 MGP_AJ_G0015620.1 mouse_genomes_project 6 106729537 106732007 + Gm17055 processed_transcript retained_intron MGP_AJ_T0015574.1 MGP_AJ_G0013669.1 mouse_genomes_project 6 120635017 120635256 + processed_pseudogene processed_pseudogene MGP_AJ_T0015566.1 MGP_AJ_G0013661.1 mouse_genomes_project 6 119700774 119701099 + processed_pseudogene processed_pseudogene MGP_AJ_T0008728.1 MGP_AJ_G0007051.1 mouse_genomes_project 6 116373897 116376245 + Gm30557 lincRNA lincRNA MGP_AJ_T0080229.1 MGP_AJ_G0031253.1 mouse_genomes_project 6 123532234 123537320 + MGP_AJ_P0080229 Acrbp protein_coding protein_coding MGP_AJ_T0080230.1 MGP_AJ_G0031253.1 mouse_genomes_project 6 123532493 123534043 + MGP_AJ_P0080230 Acrbp protein_coding protein_coding MGP_AJ_T0080231.1 MGP_AJ_G0031253.1 mouse_genomes_project 6 123532505 123546398 + MGP_AJ_P0080231 Acrbp protein_coding protein_coding MGP_AJ_T0080232.1 MGP_AJ_G0031253.1 mouse_genomes_project 6 123532513 123534095 + MGP_AJ_P0080232 Acrbp protein_coding protein_coding MGP_AJ_T0080233.1 MGP_AJ_G0031253.1 mouse_genomes_project 6 123532556 123546189 + MGP_AJ_P0080233 Acrbp protein_coding unknown_likely_coding MGP_AJ_T0080234.1 MGP_AJ_G0031253.1 mouse_genomes_project 6 123534401 123537319 + Acrbp protein_coding processed_transcript MGP_AJ_T0080235.1 MGP_AJ_G0031253.1 mouse_genomes_project 6 123536927 123538332 + Acrbp protein_coding retained_intron MGP_AJ_T0080236.1 MGP_AJ_G0031253.1 mouse_genomes_project 6 123545319 123546373 + Acrbp protein_coding retained_intron MGP_AJ_T0078896.1 MGP_AJ_G0030986.1 mouse_genomes_project 6 87378841 87590451 - MGP_AJ_P0078896 Chchd6 protein_coding protein_coding MGP_AJ_T0078897.1 MGP_AJ_G0030986.1 mouse_genomes_project 6 87378846 87590451 - MGP_AJ_P0078897 Chchd6 protein_coding protein_coding MGP_AJ_T0078898.1 MGP_AJ_G0030986.1 mouse_genomes_project 6 87413722 87590403 - Chchd6 protein_coding retained_intron MGP_AJ_T0078899.1 MGP_AJ_G0030986.1 mouse_genomes_project 6 87564175 87590410 - MGP_AJ_P0078899 Chchd6 protein_coding nonsense_mediated_decay MGP_AJ_T0015415.1 MGP_AJ_G0013510.1 mouse_genomes_project 6 64879069 64880531 - processed_pseudogene processed_pseudogene MGP_AJ_T0076934.1 MGP_AJ_G0030531.1 mouse_genomes_project 6 31080602 31093186 + MGP_AJ_P0076934 Akr1b10 protein_coding protein_coding MGP_AJ_T0076935.1 MGP_AJ_G0030531.1 mouse_genomes_project 6 31080633 31085850 + Akr1b10 protein_coding retained_intron MGP_AJ_T0076936.1 MGP_AJ_G0030531.1 mouse_genomes_project 6 31080665 31092984 + MGP_AJ_P0076936 Akr1b10 protein_coding protein_coding MGP_AJ_T0076937.1 MGP_AJ_G0030531.1 mouse_genomes_project 6 31080665 31093183 + MGP_AJ_P0076937 Akr1b10 protein_coding nonsense_mediated_decay MGP_AJ_T0076938.1 MGP_AJ_G0030531.1 mouse_genomes_project 6 31085869 31086838 + Akr1b10 protein_coding retained_intron MGP_AJ_T0076939.1 MGP_AJ_G0030531.1 mouse_genomes_project 6 31087701 31089226 + Akr1b10 protein_coding retained_intron MGP_AJ_T0101348.1 MGP_AJ_G0039314.1 mouse_genomes_project 6 56786378 56786507 - Gm22622 snoRNA snoRNA MGP_AJ_T0011635.1 MGP_AJ_G0009757.1 mouse_genomes_project 6 27411413 27411512 + Gm27568 misc_RNA misc_RNA MGP_AJ_T0080625.1 MGP_AJ_G0031372.1 mouse_genomes_project 6 131713583 131714741 - MGP_AJ_P0080625 Tas2r117 protein_coding protein_coding MGP_AJ_T0077250.1 MGP_AJ_G0030609.1 mouse_genomes_project 6 38608549 38613080 + MGP_AJ_P0077250 Pip protein_coding protein_coding MGP_AJ_T0077251.1 MGP_AJ_G0030609.1 mouse_genomes_project 6 38608582 38612972 + MGP_AJ_P0077251 Pip protein_coding protein_coding MGP_AJ_T0077252.1 MGP_AJ_G0030609.1 mouse_genomes_project 6 38608599 38612599 + MGP_AJ_P0077252 Pip protein_coding protein_coding MGP_AJ_T0077822.1 MGP_AJ_G0030754.1 mouse_genomes_project 6 53838107 53839163 + MGP_AJ_P0077822 Vmn1r5 protein_coding protein_coding MGP_AJ_T0008736.1 MGP_AJ_G0007059.1 mouse_genomes_project 6 122759286 122761930 + Gm44006 lincRNA lincRNA MGP_AJ_T0011654.1 MGP_AJ_G0009776.1 mouse_genomes_project 6 54476305 54476793 + Gm27896 misc_RNA misc_RNA MGP_AJ_T0076564.1 MGP_AJ_G0030460.1 mouse_genomes_project 6 19936366 19939681 - MGP_AJ_P0076564 Fezf1 protein_coding protein_coding MGP_AJ_T0008593.1 MGP_AJ_G0006945.1 mouse_genomes_project 6 45547179 45548205 + 4833403J16Rik lincRNA lincRNA MGP_AJ_T0008604.1 MGP_AJ_G0006953.1 mouse_genomes_project 6 48195384 48208352 - Gm26677 lincRNA lincRNA MGP_AJ_T0018291.1 MGP_AJ_G0015618.1 mouse_genomes_project 6 81236437 81243428 + B230319C09Rik processed_transcript antisense MGP_AJ_T0018292.1 MGP_AJ_G0015618.1 mouse_genomes_project 6 81236492 81240484 + B230319C09Rik processed_transcript processed_transcript MGP_AJ_T0018293.1 MGP_AJ_G0015618.1 mouse_genomes_project 6 81236494 81237773 + B230319C09Rik processed_transcript processed_transcript MGP_AJ_T0004996.1 MGP_AJ_G0004278.1 mouse_genomes_project 6 81566524 81567277 - 1700124L16Rik antisense antisense MGP_AJ_T0004997.1 MGP_AJ_G0004278.1 mouse_genomes_project 6 81566524 81567634 - 1700124L16Rik antisense antisense MGP_AJ_T0004998.1 MGP_AJ_G0004278.1 mouse_genomes_project 6 81566524 81567611 - 1700124L16Rik antisense antisense MGP_AJ_T0001962.1 MGP_AJ_G0001875.1 mouse_genomes_project 6 41950050 41953730 + TEC TEC MGP_AJ_T0077749.1 MGP_AJ_G0030737.1 mouse_genomes_project 6 51901642 51942473 + MGP_AJ_P0077749 Gars protein_coding protein_coding MGP_AJ_T0077750.1 MGP_AJ_G0030737.1 mouse_genomes_project 6 51911689 51914554 + Gars protein_coding retained_intron MGP_AJ_T0077751.1 MGP_AJ_G0030737.1 mouse_genomes_project 6 51913682 51924461 + Gars protein_coding retained_intron MGP_AJ_T0078789.1 MGP_AJ_G0030972.1 mouse_genomes_project 6 86017719 86038551 + MGP_AJ_P0078789 Rpn1 protein_coding protein_coding MGP_AJ_T0078790.1 MGP_AJ_G0030972.1 mouse_genomes_project 6 86017800 86028828 + MGP_AJ_P0078790 Rpn1 protein_coding nonsense_mediated_decay MGP_AJ_T0078791.1 MGP_AJ_G0030972.1 mouse_genomes_project 6 86027082 86034352 + Rpn1 protein_coding retained_intron MGP_AJ_T0078792.1 MGP_AJ_G0030972.1 mouse_genomes_project 6 86032533 86034609 + Rpn1 protein_coding retained_intron MGP_AJ_T0078793.1 MGP_AJ_G0030972.1 mouse_genomes_project 6 86034817 86036634 + Rpn1 protein_coding retained_intron MGP_AJ_T0015405.1 MGP_AJ_G0013500.1 mouse_genomes_project 6 64102708 64103003 + processed_pseudogene processed_pseudogene MGP_AJ_T0008531.1 MGP_AJ_G0006905.1 mouse_genomes_project 6 18537526 18542691 - Gm3289 lincRNA lincRNA MGP_AJ_T0008509.1 MGP_AJ_G0006890.1 mouse_genomes_project 6 3377132 3457825 - Gm20618 lincRNA lincRNA MGP_AJ_T0008510.1 MGP_AJ_G0006890.1 mouse_genomes_project 6 3404259 3464542 - Gm20618 lincRNA lincRNA MGP_AJ_T0102738.1 MGP_AJ_G0040479.1 mouse_genomes_project 6 132442974 132444996 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0015536.1 MGP_AJ_G0013631.1 mouse_genomes_project 6 110624627 110627440 + processed_pseudogene processed_pseudogene MGP_AJ_T0015596.1 MGP_AJ_G0013691.1 mouse_genomes_project 6 125514703 125514981 + processed_pseudogene processed_pseudogene MGP_AJ_T0078663.1 MGP_AJ_G0030945.1 mouse_genomes_project 6 84533077 84534624 + MGP_AJ_P0078663 Asprv1 protein_coding protein_coding MGP_AJ_T0102734.1 MGP_AJ_G0040475.1 mouse_genomes_project 6 131809817 131811219 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0080766.1 MGP_AJ_G0031408.1 mouse_genomes_project 6 135819489 135861217 + MGP_AJ_P0080766 Pde6h protein_coding protein_coding MGP_AJ_T0080769.1 MGP_AJ_G0031408.1 mouse_genomes_project 6 135852549 135866609 + MGP_AJ_P0080769 Pde6h protein_coding protein_coding MGP_AJ_T0080770.1 MGP_AJ_G0031408.1 mouse_genomes_project 6 135852559 135861462 + Pde6h protein_coding retained_intron MGP_AJ_T0080771.1 MGP_AJ_G0031408.1 mouse_genomes_project 6 135857269 135861248 + MGP_AJ_P0080771 Pde6h protein_coding protein_coding MGP_AJ_T0008608.1 MGP_AJ_G0006956.1 mouse_genomes_project 6 48525404 48542144 - Gm44191 lincRNA lincRNA MGP_AJ_T0004917.1 MGP_AJ_G0004221.1 mouse_genomes_project 6 27349210 27357533 + Gm13782 antisense antisense MGP_AJ_T0078021.1 MGP_AJ_G0030821.1 mouse_genomes_project 6 68664457 68668976 + MGP_AJ_P0078021 Foxi3 protein_coding protein_coding MGP_AJ_T0078022.1 MGP_AJ_G0030821.1 mouse_genomes_project 6 68664532 68668979 + MGP_AJ_P0078022 Foxi3 protein_coding protein_coding MGP_AJ_T0004952.1 MGP_AJ_G0004249.1 mouse_genomes_project 6 49010830 49028861 + Hoxaas3 antisense antisense MGP_AJ_T0004953.1 MGP_AJ_G0004249.1 mouse_genomes_project 6 49010848 49050918 + Hoxaas3 antisense antisense MGP_AJ_T0004956.1 MGP_AJ_G0004249.1 mouse_genomes_project 6 49036977 49049457 + Hoxaas3 antisense antisense MGP_AJ_T0077343.1 MGP_AJ_G0030645.1 mouse_genomes_project 6 39935036 39936090 + MGP_AJ_P0077343 Olfr13 protein_coding protein_coding MGP_AJ_T0008523.1 MGP_AJ_G0006899.1 mouse_genomes_project 6 13190193 13219759 + Gm43998 lincRNA lincRNA MGP_AJ_T0078919.1 MGP_AJ_G0031001.1 mouse_genomes_project 6 88341656 88345875 + MGP_AJ_P0078919 BC048671 protein_coding protein_coding MGP_AJ_T0078920.1 MGP_AJ_G0031001.1 mouse_genomes_project 6 88342553 88345875 + MGP_AJ_P0078920 BC048671 protein_coding protein_coding MGP_AJ_T0078466.1 MGP_AJ_G0030912.1 mouse_genomes_project 6 81674212 81735155 + MGP_AJ_P0078466 Zfp638 protein_coding protein_coding MGP_AJ_T0078467.1 MGP_AJ_G0030912.1 mouse_genomes_project 6 81674213 81749095 + MGP_AJ_P0078467 Zfp638 protein_coding nonsense_mediated_decay MGP_AJ_T0078468.1 MGP_AJ_G0030912.1 mouse_genomes_project 6 81720720 81795899 + MGP_AJ_P0078468 Zfp638 protein_coding protein_coding MGP_AJ_T0078469.1 MGP_AJ_G0030912.1 mouse_genomes_project 6 81720724 81737876 + Zfp638 protein_coding retained_intron MGP_AJ_T0078470.1 MGP_AJ_G0030912.1 mouse_genomes_project 6 81720724 81749071 + Zfp638 protein_coding processed_transcript MGP_AJ_T0078471.1 MGP_AJ_G0030912.1 mouse_genomes_project 6 81720726 81762894 + MGP_AJ_P0078471 Zfp638 protein_coding protein_coding MGP_AJ_T0078472.1 MGP_AJ_G0030912.1 mouse_genomes_project 6 81720727 81771665 + MGP_AJ_P0078472 Zfp638 protein_coding protein_coding MGP_AJ_T0078473.1 MGP_AJ_G0030912.1 mouse_genomes_project 6 81720743 81793001 + MGP_AJ_P0078473 Zfp638 protein_coding protein_coding MGP_AJ_T0078474.1 MGP_AJ_G0030912.1 mouse_genomes_project 6 81720743 81793003 + MGP_AJ_P0078474 Zfp638 protein_coding protein_coding MGP_AJ_T0078475.1 MGP_AJ_G0030912.1 mouse_genomes_project 6 81720745 81792781 + MGP_AJ_P0078475 Zfp638 protein_coding protein_coding MGP_AJ_T0078476.1 MGP_AJ_G0030912.1 mouse_genomes_project 6 81720748 81722250 + Zfp638 protein_coding retained_intron MGP_AJ_T0078477.1 MGP_AJ_G0030912.1 mouse_genomes_project 6 81720750 81749107 + Zfp638 protein_coding processed_transcript MGP_AJ_T0078478.1 MGP_AJ_G0030912.1 mouse_genomes_project 6 81734887 81793003 + MGP_AJ_P0078478 Zfp638 protein_coding protein_coding MGP_AJ_T0078479.1 MGP_AJ_G0030912.1 mouse_genomes_project 6 81734887 81792755 + MGP_AJ_P0078479 Zfp638 protein_coding protein_coding MGP_AJ_T0078480.1 MGP_AJ_G0030912.1 mouse_genomes_project 6 81748713 81750793 + Zfp638 protein_coding retained_intron MGP_AJ_T0078481.1 MGP_AJ_G0030912.1 mouse_genomes_project 6 81753971 81775362 + MGP_AJ_P0078481 Zfp638 protein_coding protein_coding MGP_AJ_T0078482.1 MGP_AJ_G0030912.1 mouse_genomes_project 6 81768176 81772977 + Zfp638 protein_coding retained_intron MGP_AJ_T0078483.1 MGP_AJ_G0030912.1 mouse_genomes_project 6 81771720 81773949 + Zfp638 protein_coding retained_intron MGP_AJ_T0078484.1 MGP_AJ_G0030912.1 mouse_genomes_project 6 81785736 81787969 + Zfp638 protein_coding retained_intron MGP_AJ_T0078485.1 MGP_AJ_G0030912.1 mouse_genomes_project 6 81789733 81793001 + Zfp638 protein_coding retained_intron MGP_AJ_T0078486.1 MGP_AJ_G0030912.1 mouse_genomes_project 6 81789733 81792705 + Zfp638 protein_coding retained_intron MGP_AJ_T0078487.1 MGP_AJ_G0030912.1 mouse_genomes_project 6 81790485 81792749 + Zfp638 protein_coding retained_intron MGP_AJ_T0008784.1 MGP_AJ_G0007092.1 mouse_genomes_project 6 144343010 144348610 + 2010013B24Rik lincRNA lincRNA MGP_AJ_T0080760.1 MGP_AJ_G0031405.1 mouse_genomes_project 6 135764351 135767770 - MGP_AJ_P0080760 Mgp protein_coding protein_coding MGP_AJ_T0080761.1 MGP_AJ_G0031405.1 mouse_genomes_project 6 135765636 135767728 - Mgp protein_coding retained_intron MGP_AJ_T0077226.1 MGP_AJ_G0030597.1 mouse_genomes_project 6 38065249 38068785 - MGP_AJ_P0077226 protein_coding protein_coding MGP_AJ_T0002730.1 MGP_AJ_G0002602.1 mouse_genomes_project 6 37930050 37930344 + TR_V_pseudogene TR_V_pseudogene MGP_AJ_T0078801.1 MGP_AJ_G0030975.1 mouse_genomes_project 6 86191632 86386560 - MGP_AJ_P0078801 Eefsec protein_coding protein_coding MGP_AJ_T0078802.1 MGP_AJ_G0030975.1 mouse_genomes_project 6 86192171 86386548 - MGP_AJ_P0078802 Eefsec protein_coding protein_coding MGP_AJ_T0078803.1 MGP_AJ_G0030975.1 mouse_genomes_project 6 86192571 86386535 - MGP_AJ_P0078803 Eefsec protein_coding protein_coding MGP_AJ_T0078804.1 MGP_AJ_G0030975.1 mouse_genomes_project 6 86216064 86386523 - MGP_AJ_P0078804 Eefsec protein_coding protein_coding MGP_AJ_T0078805.1 MGP_AJ_G0030975.1 mouse_genomes_project 6 86233262 86379812 - MGP_AJ_P0078805 Eefsec protein_coding protein_coding MGP_AJ_T0078806.1 MGP_AJ_G0030975.1 mouse_genomes_project 6 86233445 86386505 - MGP_AJ_P0078806 Eefsec protein_coding nonsense_mediated_decay MGP_AJ_T0015290.1 MGP_AJ_G0013385.1 mouse_genomes_project 6 29293711 29293946 + processed_pseudogene processed_pseudogene MGP_AJ_T0008615.1 MGP_AJ_G0006960.1 mouse_genomes_project 6 49346111 49353749 + 1700094M24Rik lincRNA lincRNA MGP_AJ_T0077414.1 MGP_AJ_G0030662.1 mouse_genomes_project 6 44814726 44838926 - MGP_AJ_P0077414 Zfp746 protein_coding protein_coding MGP_AJ_T0077415.1 MGP_AJ_G0030662.1 mouse_genomes_project 6 44814726 44838926 - MGP_AJ_P0077415 Zfp746 protein_coding protein_coding MGP_AJ_T0077416.1 MGP_AJ_G0030662.1 mouse_genomes_project 6 44817082 44819692 - MGP_AJ_P0077416 Zfp746 protein_coding protein_coding MGP_AJ_T0077417.1 MGP_AJ_G0030662.1 mouse_genomes_project 6 44818542 44834611 - Zfp746 protein_coding retained_intron MGP_AJ_T0077418.1 MGP_AJ_G0030662.1 mouse_genomes_project 6 44833954 44837543 - Zfp746 protein_coding retained_intron MGP_AJ_T0077419.1 MGP_AJ_G0030662.1 mouse_genomes_project 6 44837568 44838879 - Zfp746 protein_coding retained_intron MGP_AJ_T0078437.1 MGP_AJ_G0030905.1 mouse_genomes_project 6 81476729 81483399 - MGP_AJ_P0078437 Cd207 protein_coding protein_coding MGP_AJ_T0102787.1 MGP_AJ_G0040528.1 mouse_genomes_project 7 13072688 13072978 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0085674.1 MGP_AJ_G0032722.1 mouse_genomes_project 7 105597670 105598688 - MGP_AJ_P0085674 Olfr686 protein_coding protein_coding MGP_AJ_T0002210.1 MGP_AJ_G0002122.1 mouse_genomes_project 7 35219134 35220676 + TEC TEC MGP_AJ_T0101449.1 MGP_AJ_G0039415.1 mouse_genomes_project 7 119577131 119577245 + Gm26147 snoRNA snoRNA MGP_AJ_T0015769.1 MGP_AJ_G0013864.1 mouse_genomes_project 7 30835186 30836173 + processed_pseudogene processed_pseudogene MGP_AJ_T0018320.1 MGP_AJ_G0015629.1 mouse_genomes_project 7 496041 508564 - Gm15927 processed_transcript antisense MGP_AJ_T0018321.1 MGP_AJ_G0015629.1 mouse_genomes_project 7 506233 507178 - Gm15927 processed_transcript antisense MGP_AJ_T0018322.1 MGP_AJ_G0015629.1 mouse_genomes_project 7 506234 508532 - Gm15927 processed_transcript retained_intron MGP_AJ_T0018323.1 MGP_AJ_G0015629.1 mouse_genomes_project 7 508025 508505 - Gm15927 processed_transcript processed_transcript MGP_AJ_T0018324.1 MGP_AJ_G0015629.1 mouse_genomes_project 7 508241 508815 - Gm15927 processed_transcript processed_transcript MGP_AJ_T0102912.1 MGP_AJ_G0040652.1 mouse_genomes_project 7 106248443 107205512 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0085357.1 MGP_AJ_G0032558.1 mouse_genomes_project 7 101647966 101712794 + MGP_AJ_P0085357 Arap1 protein_coding protein_coding MGP_AJ_T0085358.1 MGP_AJ_G0032558.1 mouse_genomes_project 7 101661782 101673972 + MGP_AJ_P0085358 Arap1 protein_coding protein_coding MGP_AJ_T0085359.1 MGP_AJ_G0032558.1 mouse_genomes_project 7 101661997 101673846 + MGP_AJ_P0085359 Arap1 protein_coding protein_coding MGP_AJ_T0085360.1 MGP_AJ_G0032558.1 mouse_genomes_project 7 101662523 101673981 + MGP_AJ_P0085360 Arap1 protein_coding protein_coding MGP_AJ_T0085361.1 MGP_AJ_G0032558.1 mouse_genomes_project 7 101673809 101713361 + MGP_AJ_P0085361 Arap1 protein_coding protein_coding MGP_AJ_T0085362.1 MGP_AJ_G0032558.1 mouse_genomes_project 7 101679199 101687363 + MGP_AJ_P0085362 Arap1 protein_coding protein_coding MGP_AJ_T0085363.1 MGP_AJ_G0032558.1 mouse_genomes_project 7 101683662 101686429 + Arap1 protein_coding processed_transcript MGP_AJ_T0085364.1 MGP_AJ_G0032558.1 mouse_genomes_project 7 101684855 101687033 + MGP_AJ_P0085364 Arap1 protein_coding protein_coding MGP_AJ_T0085365.1 MGP_AJ_G0032558.1 mouse_genomes_project 7 101686232 101687281 + MGP_AJ_P0085365 Arap1 protein_coding protein_coding MGP_AJ_T0085366.1 MGP_AJ_G0032558.1 mouse_genomes_project 7 101686237 101687673 + MGP_AJ_P0085366 Arap1 protein_coding protein_coding MGP_AJ_T0085367.1 MGP_AJ_G0032558.1 mouse_genomes_project 7 101695178 101714060 + MGP_AJ_P0085367 Arap1 protein_coding protein_coding MGP_AJ_T0085368.1 MGP_AJ_G0032558.1 mouse_genomes_project 7 101695198 101714060 + MGP_AJ_P0085368 Arap1 protein_coding protein_coding MGP_AJ_T0085369.1 MGP_AJ_G0032558.1 mouse_genomes_project 7 101695465 101696942 + Arap1 protein_coding retained_intron MGP_AJ_T0085370.1 MGP_AJ_G0032558.1 mouse_genomes_project 7 101696659 101699169 + Arap1 protein_coding processed_transcript MGP_AJ_T0085371.1 MGP_AJ_G0032558.1 mouse_genomes_project 7 101699154 101700358 + Arap1 protein_coding processed_transcript MGP_AJ_T0085372.1 MGP_AJ_G0032558.1 mouse_genomes_project 7 101703019 101710568 + Arap1 protein_coding retained_intron MGP_AJ_T0085373.1 MGP_AJ_G0032558.1 mouse_genomes_project 7 101709136 101713152 + Arap1 protein_coding retained_intron MGP_AJ_T0085443.1 MGP_AJ_G0032573.1 mouse_genomes_project 7 102368231 102408133 - MGP_AJ_P0085443 Rnf121 protein_coding protein_coding MGP_AJ_T0085444.1 MGP_AJ_G0032573.1 mouse_genomes_project 7 102368471 102413709 - MGP_AJ_P0085444 Rnf121 protein_coding protein_coding MGP_AJ_T0085445.1 MGP_AJ_G0032573.1 mouse_genomes_project 7 102368532 102372565 - Rnf121 protein_coding retained_intron MGP_AJ_T0085446.1 MGP_AJ_G0032573.1 mouse_genomes_project 7 102376938 102413698 - MGP_AJ_P0085446 Rnf121 protein_coding protein_coding MGP_AJ_T0085447.1 MGP_AJ_G0032573.1 mouse_genomes_project 7 102383243 102413739 - Rnf121 protein_coding processed_transcript MGP_AJ_T0085448.1 MGP_AJ_G0032573.1 mouse_genomes_project 7 102387466 102413625 - MGP_AJ_P0085448 Rnf121 protein_coding protein_coding MGP_AJ_T0015784.1 MGP_AJ_G0013879.1 mouse_genomes_project 7 32417494 32417561 + processed_pseudogene processed_pseudogene MGP_AJ_T0085536.1 MGP_AJ_G0032616.1 mouse_genomes_project 7 103386878 103387838 + MGP_AJ_P0085536 Olfr582 protein_coding protein_coding MGP_AJ_T0009027.1 MGP_AJ_G0007267.1 mouse_genomes_project 7 127565817 127567371 + 4930448A20Rik lincRNA lincRNA MGP_AJ_T0102827.1 MGP_AJ_G0040567.1 mouse_genomes_project 7 43190780 43193020 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0102782.1 MGP_AJ_G0040523.1 mouse_genomes_project 7 12094287 12094577 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0015750.1 MGP_AJ_G0013845.1 mouse_genomes_project 7 23689487 23689775 + processed_pseudogene processed_pseudogene MGP_AJ_T0102891.1 MGP_AJ_G0040631.1 mouse_genomes_project 7 103521856 103522804 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0002246.1 MGP_AJ_G0002158.1 mouse_genomes_project 7 64381664 64382136 + TEC TEC MGP_AJ_T0081272.1 MGP_AJ_G0031496.1 mouse_genomes_project 7 473730 480059 - MGP_AJ_P0081272 Oscar protein_coding protein_coding MGP_AJ_T0081273.1 MGP_AJ_G0031496.1 mouse_genomes_project 7 473730 480083 - MGP_AJ_P0081273 Oscar protein_coding protein_coding MGP_AJ_T0081274.1 MGP_AJ_G0031496.1 mouse_genomes_project 7 473730 480083 - MGP_AJ_P0081274 Oscar protein_coding protein_coding MGP_AJ_T0081275.1 MGP_AJ_G0031496.1 mouse_genomes_project 7 475088 480011 - Oscar protein_coding processed_transcript MGP_AJ_T0081789.1 MGP_AJ_G0031666.1 mouse_genomes_project 7 13397024 13405296 - MGP_AJ_P0081789 Gltscr2 protein_coding protein_coding MGP_AJ_T0081790.1 MGP_AJ_G0031666.1 mouse_genomes_project 7 13397035 13404958 - Gltscr2 protein_coding retained_intron MGP_AJ_T0081791.1 MGP_AJ_G0031666.1 mouse_genomes_project 7 13402055 13405263 - Gltscr2 protein_coding processed_transcript MGP_AJ_T0098464.1 MGP_AJ_G0036448.1 mouse_genomes_project 7 15126697 15127202 + pseudogene pseudogene MGP_AJ_T0082749.1 MGP_AJ_G0031939.1 mouse_genomes_project 7 26937524 26947383 + MGP_AJ_P0082749 Rinl protein_coding protein_coding MGP_AJ_T0082736.1 MGP_AJ_G0031936.1 mouse_genomes_project 7 26903039 26905833 + MGP_AJ_P0082736 Ccer2 protein_coding protein_coding MGP_AJ_T0015814.1 MGP_AJ_G0013909.1 mouse_genomes_project 7 42114463 42114811 - processed_pseudogene processed_pseudogene MGP_AJ_T0100158.1 MGP_AJ_G0038124.1 mouse_genomes_project 7 75591960 75592044 + Gm25282 snRNA snRNA MGP_AJ_T0085592.1 MGP_AJ_G0032668.1 mouse_genomes_project 7 104429307 104430273 + MGP_AJ_P0085592 Olfr638 protein_coding protein_coding MGP_AJ_T0084948.1 MGP_AJ_G0032458.1 mouse_genomes_project 7 86886067 86887155 + MGP_AJ_P0084948 Olfr292 protein_coding protein_coding MGP_AJ_T0100150.1 MGP_AJ_G0038116.1 mouse_genomes_project 7 52872715 52872823 + Gm22444 snRNA snRNA MGP_AJ_T0082221.1 MGP_AJ_G0031804.1 mouse_genomes_project 7 22146514 22152929 + MGP_AJ_P0082221 Lypd5 protein_coding protein_coding MGP_AJ_T0101412.1 MGP_AJ_G0039378.1 mouse_genomes_project 7 57953901 57954035 + Gm23911 snoRNA snoRNA MGP_AJ_T0087502.1 MGP_AJ_G0033173.1 mouse_genomes_project 7 141791145 141805875 - MGP_AJ_P0087502 Zfp941 protein_coding protein_coding MGP_AJ_T0087503.1 MGP_AJ_G0033173.1 mouse_genomes_project 7 141793385 141805829 - MGP_AJ_P0087503 Zfp941 protein_coding protein_coding MGP_AJ_T0087504.1 MGP_AJ_G0033173.1 mouse_genomes_project 7 141802160 141805843 - Zfp941 protein_coding processed_transcript MGP_AJ_T0084397.1 MGP_AJ_G0032333.1 mouse_genomes_project 7 66527379 66545431 + MGP_AJ_P0084397 Lins1 protein_coding protein_coding MGP_AJ_T0084398.1 MGP_AJ_G0032333.1 mouse_genomes_project 7 66527384 66551791 + MGP_AJ_P0084398 Lins1 protein_coding protein_coding MGP_AJ_T0084399.1 MGP_AJ_G0032333.1 mouse_genomes_project 7 66527390 66545295 + MGP_AJ_P0084399 Lins1 protein_coding protein_coding MGP_AJ_T0084400.1 MGP_AJ_G0032333.1 mouse_genomes_project 7 66527439 66546976 + Lins1 protein_coding retained_intron MGP_AJ_T0084401.1 MGP_AJ_G0032333.1 mouse_genomes_project 7 66527448 66554300 + MGP_AJ_P0084401 Lins1 protein_coding nonsense_mediated_decay MGP_AJ_T0084402.1 MGP_AJ_G0032333.1 mouse_genomes_project 7 66527448 66551788 + MGP_AJ_P0084402 Lins1 protein_coding protein_coding MGP_AJ_T0084403.1 MGP_AJ_G0032333.1 mouse_genomes_project 7 66527461 66551791 + MGP_AJ_P0084403 Lins1 protein_coding nonsense_mediated_decay MGP_AJ_T0084404.1 MGP_AJ_G0032333.1 mouse_genomes_project 7 66545103 66551731 + MGP_AJ_P0084404 Lins1 protein_coding nonsense_mediated_decay MGP_AJ_T0084405.1 MGP_AJ_G0032333.1 mouse_genomes_project 7 66545251 66547449 + MGP_AJ_P0084405 Lins1 protein_coding protein_coding MGP_AJ_T0084406.1 MGP_AJ_G0032333.1 mouse_genomes_project 7 66545396 66547638 + MGP_AJ_P0084406 Lins1 protein_coding protein_coding MGP_AJ_T0084407.1 MGP_AJ_G0032333.1 mouse_genomes_project 7 66546482 66550894 + MGP_AJ_P0084407 Lins1 protein_coding nonsense_mediated_decay MGP_AJ_T0084408.1 MGP_AJ_G0032333.1 mouse_genomes_project 7 66547219 66554298 + Lins1 protein_coding retained_intron MGP_AJ_T0010822.1 MGP_AJ_G0008944.1 mouse_genomes_project 7 125197 125279 + Mir291a miRNA miRNA MGP_AJ_T0087983.1 MGP_AJ_G0033271.1 mouse_genomes_project 7 145482721 145560231 - MGP_AJ_P0087983 Ppfia1 protein_coding protein_coding MGP_AJ_T0087984.1 MGP_AJ_G0033271.1 mouse_genomes_project 7 145483640 145559038 - MGP_AJ_P0087984 Ppfia1 protein_coding protein_coding MGP_AJ_T0087985.1 MGP_AJ_G0033271.1 mouse_genomes_project 7 145488390 145492755 - Ppfia1 protein_coding processed_transcript MGP_AJ_T0087986.1 MGP_AJ_G0033271.1 mouse_genomes_project 7 145504831 145506476 - Ppfia1 protein_coding retained_intron MGP_AJ_T0087987.1 MGP_AJ_G0033271.1 mouse_genomes_project 7 145512121 145514884 - Ppfia1 protein_coding retained_intron MGP_AJ_T0087988.1 MGP_AJ_G0033271.1 mouse_genomes_project 7 145524840 145558863 - MGP_AJ_P0087988 Ppfia1 protein_coding nonsense_mediated_decay MGP_AJ_T0087989.1 MGP_AJ_G0033271.1 mouse_genomes_project 7 145525865 145530007 - Ppfia1 protein_coding retained_intron MGP_AJ_T0083555.1 MGP_AJ_G0032123.1 mouse_genomes_project 7 42842605 42857567 + MGP_AJ_P0083555 Klk13 protein_coding protein_coding MGP_AJ_T0083556.1 MGP_AJ_G0032123.1 mouse_genomes_project 7 42843437 42851350 + MGP_AJ_P0083556 Klk13 protein_coding protein_coding MGP_AJ_T0083557.1 MGP_AJ_G0032123.1 mouse_genomes_project 7 42844997 42853906 + MGP_AJ_P0083557 Klk13 protein_coding protein_coding MGP_AJ_T0084838.1 MGP_AJ_G0032411.1 mouse_genomes_project 7 81662018 81687950 + MGP_AJ_P0084838 Whamm protein_coding protein_coding MGP_AJ_T0081632.1 MGP_AJ_G0031600.1 mouse_genomes_project 7 7622064 7623024 - MGP_AJ_P0081632 Vmn1r68 protein_coding protein_coding MGP_AJ_T0099087.1 MGP_AJ_G0037060.1 mouse_genomes_project 7 33497504 33498644 - Gm44836 sense_intronic sense_intronic MGP_AJ_T0081937.1 MGP_AJ_G0031707.1 mouse_genomes_project 7 15503650 15511320 + MGP_AJ_P0081937 Ceacam13 protein_coding protein_coding MGP_AJ_T0081938.1 MGP_AJ_G0031707.1 mouse_genomes_project 7 15503650 15507248 + MGP_AJ_P0081938 Ceacam13 protein_coding protein_coding MGP_AJ_T0082386.1 MGP_AJ_G0031843.1 mouse_genomes_project 7 23214784 23216868 - MGP_AJ_P0082386 Cnfn protein_coding protein_coding MGP_AJ_T0082387.1 MGP_AJ_G0031843.1 mouse_genomes_project 7 23214786 23216889 - MGP_AJ_P0082387 Cnfn protein_coding protein_coding MGP_AJ_T0082546.1 MGP_AJ_G0031885.1 mouse_genomes_project 7 25325847 25357880 - MGP_AJ_P0082546 Ltbp4 protein_coding protein_coding MGP_AJ_T0082547.1 MGP_AJ_G0031885.1 mouse_genomes_project 7 25325851 25353871 - MGP_AJ_P0082547 Ltbp4 protein_coding protein_coding MGP_AJ_T0082548.1 MGP_AJ_G0031885.1 mouse_genomes_project 7 25325853 25357880 - MGP_AJ_P0082548 Ltbp4 protein_coding protein_coding MGP_AJ_T0082549.1 MGP_AJ_G0031885.1 mouse_genomes_project 7 25326709 25353821 - MGP_AJ_P0082549 Ltbp4 protein_coding protein_coding MGP_AJ_T0082550.1 MGP_AJ_G0031885.1 mouse_genomes_project 7 25326790 25327682 - Ltbp4 protein_coding retained_intron MGP_AJ_T0082551.1 MGP_AJ_G0031885.1 mouse_genomes_project 7 25327334 25331360 - MGP_AJ_P0082551 Ltbp4 protein_coding protein_coding MGP_AJ_T0082552.1 MGP_AJ_G0031885.1 mouse_genomes_project 7 25328273 25331379 - Ltbp4 protein_coding retained_intron MGP_AJ_T0082553.1 MGP_AJ_G0031885.1 mouse_genomes_project 7 25329679 25331163 - Ltbp4 protein_coding retained_intron MGP_AJ_T0082554.1 MGP_AJ_G0031885.1 mouse_genomes_project 7 25332260 25353856 - Ltbp4 protein_coding processed_transcript MGP_AJ_T0083717.1 MGP_AJ_G0032157.1 mouse_genomes_project 7 44176036 44179423 - MGP_AJ_P0083717 Atf5 protein_coding protein_coding MGP_AJ_T0083718.1 MGP_AJ_G0032157.1 mouse_genomes_project 7 44176037 44180364 - MGP_AJ_P0083718 Atf5 protein_coding protein_coding MGP_AJ_T0085512.1 MGP_AJ_G0032594.1 mouse_genomes_project 7 102972692 102973673 - MGP_AJ_P0085512 Olfr553 protein_coding protein_coding MGP_AJ_T0081777.1 MGP_AJ_G0031660.1 mouse_genomes_project 7 11849645 11850688 - MGP_AJ_P0081777 protein_coding protein_coding MGP_AJ_T0082409.1 MGP_AJ_G0031848.1 mouse_genomes_project 7 23475251 23476524 - MGP_AJ_P0082409 Erich4 protein_coding protein_coding MGP_AJ_T0100187.1 MGP_AJ_G0038153.1 mouse_genomes_project 7 127909106 127909213 + Gm22747 snRNA snRNA MGP_AJ_T0005238.1 MGP_AJ_G0004452.1 mouse_genomes_project 7 80447647 80449959 + Gm44851 antisense antisense MGP_AJ_T0087556.1 MGP_AJ_G0033187.1 mouse_genomes_project 7 141997386 141998571 - MGP_AJ_P0087556 Ifitm3 protein_coding protein_coding MGP_AJ_T0002277.1 MGP_AJ_G0002188.1 mouse_genomes_project 7 79613977 79615648 - TEC TEC MGP_AJ_T0005235.1 MGP_AJ_G0004450.1 mouse_genomes_project 7 80098091 80110435 - Gm21057 antisense antisense MGP_AJ_T0005236.1 MGP_AJ_G0004450.1 mouse_genomes_project 7 80108954 80110455 - Gm21057 antisense antisense MGP_AJ_T0087207.1 MGP_AJ_G0033084.1 mouse_genomes_project 7 132256474 132276421 - MGP_AJ_P0087207 2310057M21Rik protein_coding protein_coding MGP_AJ_T0085556.1 MGP_AJ_G0032634.1 mouse_genomes_project 7 103861171 103862131 + MGP_AJ_P0085556 Olfr606 protein_coding protein_coding MGP_AJ_T0085795.1 MGP_AJ_G0032755.1 mouse_genomes_project 7 107418107 107419058 - MGP_AJ_P0085795 Olfr700 protein_coding protein_coding MGP_AJ_T0085695.1 MGP_AJ_G0032735.1 mouse_genomes_project 7 105966585 105990286 - MGP_AJ_P0085695 Apbb1 protein_coding protein_coding MGP_AJ_T0085696.1 MGP_AJ_G0032735.1 mouse_genomes_project 7 105966586 105977366 - MGP_AJ_P0085696 Apbb1 protein_coding protein_coding MGP_AJ_T0085697.1 MGP_AJ_G0032735.1 mouse_genomes_project 7 105966586 105977582 - MGP_AJ_P0085697 Apbb1 protein_coding protein_coding MGP_AJ_T0085698.1 MGP_AJ_G0032735.1 mouse_genomes_project 7 105966586 105976846 - MGP_AJ_P0085698 Apbb1 protein_coding protein_coding MGP_AJ_T0085699.1 MGP_AJ_G0032735.1 mouse_genomes_project 7 105966586 105989911 - MGP_AJ_P0085699 Apbb1 protein_coding protein_coding MGP_AJ_T0085700.1 MGP_AJ_G0032735.1 mouse_genomes_project 7 105966588 105989873 - MGP_AJ_P0085700 Apbb1 protein_coding protein_coding MGP_AJ_T0085701.1 MGP_AJ_G0032735.1 mouse_genomes_project 7 105966589 105977025 - Apbb1 protein_coding retained_intron MGP_AJ_T0085702.1 MGP_AJ_G0032735.1 mouse_genomes_project 7 105966605 105990124 - MGP_AJ_P0085702 Apbb1 protein_coding protein_coding MGP_AJ_T0085703.1 MGP_AJ_G0032735.1 mouse_genomes_project 7 105966625 105977361 - MGP_AJ_P0085703 Apbb1 protein_coding protein_coding MGP_AJ_T0085704.1 MGP_AJ_G0032735.1 mouse_genomes_project 7 105966920 105976846 - MGP_AJ_P0085704 Apbb1 protein_coding protein_coding MGP_AJ_T0085705.1 MGP_AJ_G0032735.1 mouse_genomes_project 7 105967263 105973574 - Apbb1 protein_coding retained_intron MGP_AJ_T0085706.1 MGP_AJ_G0032735.1 mouse_genomes_project 7 105967570 105975363 - Apbb1 protein_coding retained_intron MGP_AJ_T0085707.1 MGP_AJ_G0032735.1 mouse_genomes_project 7 105973658 105989825 - MGP_AJ_P0085707 Apbb1 protein_coding protein_coding MGP_AJ_T0085708.1 MGP_AJ_G0032735.1 mouse_genomes_project 7 105974175 105977032 - MGP_AJ_P0085708 Apbb1 protein_coding protein_coding MGP_AJ_T0085709.1 MGP_AJ_G0032735.1 mouse_genomes_project 7 105974618 105977334 - MGP_AJ_P0085709 Apbb1 protein_coding protein_coding MGP_AJ_T0085710.1 MGP_AJ_G0032735.1 mouse_genomes_project 7 105974733 105977342 - MGP_AJ_P0085710 Apbb1 protein_coding protein_coding MGP_AJ_T0085711.1 MGP_AJ_G0032735.1 mouse_genomes_project 7 105975162 105977661 - MGP_AJ_P0085711 Apbb1 protein_coding protein_coding MGP_AJ_T0085712.1 MGP_AJ_G0032735.1 mouse_genomes_project 7 105975236 105976739 - Apbb1 protein_coding retained_intron MGP_AJ_T0085713.1 MGP_AJ_G0032735.1 mouse_genomes_project 7 105981965 105989821 - MGP_AJ_P0085713 Apbb1 protein_coding protein_coding MGP_AJ_T0085806.1 MGP_AJ_G0032765.1 mouse_genomes_project 7 107583113 107584064 - MGP_AJ_P0085806 Olfr6 protein_coding protein_coding MGP_AJ_T0087557.1 MGP_AJ_G0033188.1 mouse_genomes_project 7 142003612 142004693 - MGP_AJ_P0087557 Ifitm6 protein_coding protein_coding MGP_AJ_T0082298.1 MGP_AJ_G0031827.1 mouse_genomes_project 7 22740897 22764994 + MGP_AJ_P0082298 Arhgef1 protein_coding protein_coding MGP_AJ_T0082299.1 MGP_AJ_G0031827.1 mouse_genomes_project 7 22741022 22764991 + MGP_AJ_P0082299 Arhgef1 protein_coding protein_coding MGP_AJ_T0082300.1 MGP_AJ_G0031827.1 mouse_genomes_project 7 22741036 22764991 + MGP_AJ_P0082300 Arhgef1 protein_coding protein_coding MGP_AJ_T0082301.1 MGP_AJ_G0031827.1 mouse_genomes_project 7 22741041 22764996 + MGP_AJ_P0082301 Arhgef1 protein_coding protein_coding MGP_AJ_T0082302.1 MGP_AJ_G0031827.1 mouse_genomes_project 7 22741050 22742368 + Arhgef1 protein_coding processed_transcript MGP_AJ_T0082303.1 MGP_AJ_G0031827.1 mouse_genomes_project 7 22741056 22745874 + MGP_AJ_P0082303 Arhgef1 protein_coding protein_coding MGP_AJ_T0082304.1 MGP_AJ_G0031827.1 mouse_genomes_project 7 22741060 22747942 + Arhgef1 protein_coding retained_intron MGP_AJ_T0082305.1 MGP_AJ_G0031827.1 mouse_genomes_project 7 22742339 22751425 + MGP_AJ_P0082305 Arhgef1 protein_coding protein_coding MGP_AJ_T0082306.1 MGP_AJ_G0031827.1 mouse_genomes_project 7 22742341 22764991 + Arhgef1 protein_coding retained_intron MGP_AJ_T0082307.1 MGP_AJ_G0031827.1 mouse_genomes_project 7 22742388 22750574 + MGP_AJ_P0082307 Arhgef1 protein_coding protein_coding MGP_AJ_T0082308.1 MGP_AJ_G0031827.1 mouse_genomes_project 7 22742390 22764994 + MGP_AJ_P0082308 Arhgef1 protein_coding protein_coding MGP_AJ_T0082309.1 MGP_AJ_G0031827.1 mouse_genomes_project 7 22742423 22761493 + MGP_AJ_P0082309 Arhgef1 protein_coding protein_coding MGP_AJ_T0082310.1 MGP_AJ_G0031827.1 mouse_genomes_project 7 22745628 22750114 + MGP_AJ_P0082310 Arhgef1 protein_coding protein_coding MGP_AJ_T0082311.1 MGP_AJ_G0031827.1 mouse_genomes_project 7 22750590 22754191 + Arhgef1 protein_coding retained_intron MGP_AJ_T0082312.1 MGP_AJ_G0031827.1 mouse_genomes_project 7 22752629 22764508 + MGP_AJ_P0082312 Arhgef1 protein_coding protein_coding MGP_AJ_T0082313.1 MGP_AJ_G0031827.1 mouse_genomes_project 7 22755000 22760781 + Arhgef1 protein_coding retained_intron MGP_AJ_T0082314.1 MGP_AJ_G0031827.1 mouse_genomes_project 7 22761649 22763249 + Arhgef1 protein_coding retained_intron MGP_AJ_T0082315.1 MGP_AJ_G0031827.1 mouse_genomes_project 7 22761754 22763887 + Arhgef1 protein_coding retained_intron MGP_AJ_T0082316.1 MGP_AJ_G0031827.1 mouse_genomes_project 7 22761764 22764338 + Arhgef1 protein_coding processed_transcript MGP_AJ_T0010885.1 MGP_AJ_G0009007.1 mouse_genomes_project 7 61712121 61712213 - Mir344c miRNA miRNA MGP_AJ_T0083882.1 MGP_AJ_G0032204.1 mouse_genomes_project 7 44861190 44877860 - MGP_AJ_P0083882 Dhdh protein_coding protein_coding MGP_AJ_T0083883.1 MGP_AJ_G0032204.1 mouse_genomes_project 7 44864363 44869038 - Dhdh protein_coding processed_transcript MGP_AJ_T0100195.1 MGP_AJ_G0038161.1 mouse_genomes_project 7 143057429 143057536 - Gm25416 snRNA snRNA MGP_AJ_T0102074.1 MGP_AJ_G0039853.1 mouse_genomes_project 7 41108462 41109966 + transcribed_unprocessed_pseudogene processed_transcript MGP_AJ_T0010849.1 MGP_AJ_G0008971.1 mouse_genomes_project 7 26698473 26698533 - Mir7049 miRNA miRNA MGP_AJ_T0009058.1 MGP_AJ_G0007288.1 mouse_genomes_project 7 135354473 135427968 - Gm4593 lincRNA lincRNA MGP_AJ_T0009059.1 MGP_AJ_G0007288.1 mouse_genomes_project 7 135427174 135430149 - Gm4593 lincRNA lincRNA MGP_AJ_T0087047.1 MGP_AJ_G0033055.1 mouse_genomes_project 7 128971103 128992074 + MGP_AJ_P0087047 Itgax protein_coding protein_coding MGP_AJ_T0087048.1 MGP_AJ_G0033055.1 mouse_genomes_project 7 128971107 128975562 + MGP_AJ_P0087048 Itgax protein_coding protein_coding MGP_AJ_T0087049.1 MGP_AJ_G0033055.1 mouse_genomes_project 7 128988931 128989652 + Itgax protein_coding retained_intron MGP_AJ_T0010840.1 MGP_AJ_G0008962.1 mouse_genomes_project 7 21090906 21091016 + Gm25196 miRNA miRNA MGP_AJ_T0008851.1 MGP_AJ_G0007149.1 mouse_genomes_project 7 35627138 35630505 - Gm28076 lincRNA lincRNA MGP_AJ_T0081631.1 MGP_AJ_G0031599.1 mouse_genomes_project 7 7581632 7589798 - MGP_AJ_P0081631 Zik1 protein_coding protein_coding MGP_AJ_T0087496.1 MGP_AJ_G0033167.1 mouse_genomes_project 7 141618242 141625572 + MGP_AJ_P0087496 Olfr53 protein_coding protein_coding MGP_AJ_T0002194.1 MGP_AJ_G0002106.1 mouse_genomes_project 7 14370136 14371798 - TEC TEC MGP_AJ_T0005641.1 MGP_AJ_G0004748.1 mouse_genomes_project 7 117164023 117164773 + AV356131 bidirectional_promoter_lncRNA bidirectional_promoter_lncRNA MGP_AJ_T0085669.1 MGP_AJ_G0032717.1 mouse_genomes_project 7 105472322 105473274 + MGP_AJ_P0085669 protein_coding protein_coding MGP_AJ_T0085129.1 MGP_AJ_G0032505.1 mouse_genomes_project 7 98008549 98072836 + Pak1 protein_coding retained_intron MGP_AJ_T0085130.1 MGP_AJ_G0032505.1 mouse_genomes_project 7 98008549 98130088 + MGP_AJ_P0085130 Pak1 protein_coding protein_coding MGP_AJ_T0085131.1 MGP_AJ_G0032505.1 mouse_genomes_project 7 98048917 98083839 + MGP_AJ_P0085131 Pak1 protein_coding protein_coding MGP_AJ_T0085132.1 MGP_AJ_G0032505.1 mouse_genomes_project 7 98060889 98130586 + MGP_AJ_P0085132 Pak1 protein_coding nonsense_mediated_decay MGP_AJ_T0085133.1 MGP_AJ_G0032505.1 mouse_genomes_project 7 98060889 98130586 + MGP_AJ_P0085133 Pak1 protein_coding protein_coding MGP_AJ_T0085134.1 MGP_AJ_G0032505.1 mouse_genomes_project 7 98113077 98129487 + Pak1 protein_coding retained_intron MGP_AJ_T0085891.1 MGP_AJ_G0032826.1 mouse_genomes_project 7 110160793 110164827 + MGP_AJ_P0085891 Rpl27a protein_coding protein_coding MGP_AJ_T0085892.1 MGP_AJ_G0032826.1 mouse_genomes_project 7 110160842 110162811 + Rpl27a protein_coding retained_intron MGP_AJ_T0085893.1 MGP_AJ_G0032826.1 mouse_genomes_project 7 110160845 110161828 + Rpl27a protein_coding retained_intron MGP_AJ_T0085894.1 MGP_AJ_G0032826.1 mouse_genomes_project 7 110160859 110164226 + Rpl27a protein_coding retained_intron MGP_AJ_T0085895.1 MGP_AJ_G0032826.1 mouse_genomes_project 7 110160866 110162246 + MGP_AJ_P0085895 Rpl27a protein_coding nonsense_mediated_decay MGP_AJ_T0085896.1 MGP_AJ_G0032826.1 mouse_genomes_project 7 110160916 110161587 + Rpl27a protein_coding retained_intron MGP_AJ_T0081847.1 MGP_AJ_G0031679.1 mouse_genomes_project 7 13781428 13790030 + MGP_AJ_P0081847 Bbc3 protein_coding protein_coding MGP_AJ_T0081848.1 MGP_AJ_G0031679.1 mouse_genomes_project 7 13782269 13785542 + MGP_AJ_P0081848 Bbc3 protein_coding protein_coding MGP_AJ_T0081849.1 MGP_AJ_G0031679.1 mouse_genomes_project 7 13785320 13789524 + Bbc3 protein_coding processed_transcript MGP_AJ_T0081664.1 MGP_AJ_G0031622.1 mouse_genomes_project 7 9876009 9879123 - MGP_AJ_P0081664 protein_coding protein_coding MGP_AJ_T0005213.1 MGP_AJ_G0004434.1 mouse_genomes_project 7 45969309 45986036 + Gm15700 antisense antisense MGP_AJ_T0018421.1 MGP_AJ_G0015671.1 mouse_genomes_project 7 129033633 129045037 - 4931431B13Rik processed_transcript antisense MGP_AJ_T0018422.1 MGP_AJ_G0015671.1 mouse_genomes_project 7 129043786 129045033 - 4931431B13Rik processed_transcript retained_intron MGP_AJ_T0082090.1 MGP_AJ_G0031757.1 mouse_genomes_project 7 17154472 17163150 + MGP_AJ_P0082090 Trappc6a protein_coding nonsense_mediated_decay MGP_AJ_T0082091.1 MGP_AJ_G0031757.1 mouse_genomes_project 7 17154512 17163157 + MGP_AJ_P0082091 Trappc6a protein_coding nonsense_mediated_decay MGP_AJ_T0082092.1 MGP_AJ_G0031757.1 mouse_genomes_project 7 17154514 17163157 + MGP_AJ_P0082092 Trappc6a protein_coding protein_coding MGP_AJ_T0082093.1 MGP_AJ_G0031757.1 mouse_genomes_project 7 17154528 17163153 + MGP_AJ_P0082093 Trappc6a protein_coding protein_coding MGP_AJ_T0082094.1 MGP_AJ_G0031757.1 mouse_genomes_project 7 17154532 17162330 + Trappc6a protein_coding retained_intron MGP_AJ_T0082095.1 MGP_AJ_G0031757.1 mouse_genomes_project 7 17161431 17163148 + MGP_AJ_P0082095 Trappc6a protein_coding protein_coding MGP_AJ_T0083095.1 MGP_AJ_G0032016.1 mouse_genomes_project 7 28898695 28899293 + MGP_AJ_P0083095 2200002J24Rik protein_coding protein_coding MGP_AJ_T0008918.1 MGP_AJ_G0007199.1 mouse_genomes_project 7 72966304 72970623 - Gm6567 lincRNA lincRNA MGP_AJ_T0086206.1 MGP_AJ_G0032888.1 mouse_genomes_project 7 119586797 119600584 - MGP_AJ_P0086206 Knop1 protein_coding protein_coding MGP_AJ_T0086207.1 MGP_AJ_G0032888.1 mouse_genomes_project 7 119586797 119600584 - MGP_AJ_P0086207 Knop1 protein_coding protein_coding MGP_AJ_T0086208.1 MGP_AJ_G0032888.1 mouse_genomes_project 7 119586812 119600587 - MGP_AJ_P0086208 Knop1 protein_coding protein_coding MGP_AJ_T0086209.1 MGP_AJ_G0032888.1 mouse_genomes_project 7 119588365 119600270 - MGP_AJ_P0086209 Knop1 protein_coding protein_coding MGP_AJ_T0086210.1 MGP_AJ_G0032888.1 mouse_genomes_project 7 119590075 119600188 - MGP_AJ_P0086210 Knop1 protein_coding protein_coding MGP_AJ_T0086211.1 MGP_AJ_G0032888.1 mouse_genomes_project 7 119590334 119600840 - MGP_AJ_P0086211 Knop1 protein_coding protein_coding MGP_AJ_T0086212.1 MGP_AJ_G0032888.1 mouse_genomes_project 7 119597328 119598854 - MGP_AJ_P0086212 Knop1 protein_coding protein_coding MGP_AJ_T0008855.1 MGP_AJ_G0007153.1 mouse_genomes_project 7 36545198 36556766 - Gm45106 lincRNA lincRNA MGP_AJ_T0008887.1 MGP_AJ_G0007175.1 mouse_genomes_project 7 63877096 63900789 + Gm45055 lincRNA lincRNA MGP_AJ_T0008888.1 MGP_AJ_G0007175.1 mouse_genomes_project 7 63887028 63900759 + Gm45055 lincRNA lincRNA MGP_AJ_T0085518.1 MGP_AJ_G0032600.1 mouse_genomes_project 7 103063198 103072917 + MGP_AJ_P0085518 Olfr558 protein_coding protein_coding MGP_AJ_T0085638.1 MGP_AJ_G0032691.1 mouse_genomes_project 7 104748943 104778108 - MGP_AJ_P0085638 Trim30a protein_coding unknown_likely_coding MGP_AJ_T0085639.1 MGP_AJ_G0032691.1 mouse_genomes_project 7 104751255 104752532 - Trim30a protein_coding retained_intron MGP_AJ_T0085640.1 MGP_AJ_G0032691.1 mouse_genomes_project 7 104751280 104752226 - Trim30a protein_coding processed_transcript MGP_AJ_T0085641.1 MGP_AJ_G0032691.1 mouse_genomes_project 7 104751595 104752178 - Trim30a protein_coding retained_intron MGP_AJ_T0009065.1 MGP_AJ_G0007292.1 mouse_genomes_project 7 143570667 143573282 - H19 lincRNA lincRNA MGP_AJ_T0009066.1 MGP_AJ_G0007292.1 mouse_genomes_project 7 143570696 143573259 - H19 lincRNA lincRNA MGP_AJ_T0009067.1 MGP_AJ_G0007292.1 mouse_genomes_project 7 143570772 143571677 - H19 lincRNA lincRNA MGP_AJ_T0009068.1 MGP_AJ_G0007292.1 mouse_genomes_project 7 143571434 143572049 - H19 lincRNA lincRNA MGP_AJ_T0009069.1 MGP_AJ_G0007292.1 mouse_genomes_project 7 143571645 143573234 - H19 lincRNA lincRNA MGP_AJ_T0083988.1 MGP_AJ_G0032230.1 mouse_genomes_project 7 45230618 45265844 - MGP_AJ_P0083988 Grin2d protein_coding protein_coding MGP_AJ_T0083989.1 MGP_AJ_G0032230.1 mouse_genomes_project 7 45265095 45269642 - MGP_AJ_P0083989 Grin2d protein_coding protein_coding MGP_AJ_T0085936.1 MGP_AJ_G0032840.1 mouse_genomes_project 7 110871897 110933369 + MGP_AJ_P0085936 Swap70 protein_coding protein_coding MGP_AJ_T0081304.1 MGP_AJ_G0031501.1 mouse_genomes_project 7 524583 531457 - MGP_AJ_P0081304 Leng1 protein_coding protein_coding MGP_AJ_T0081860.1 MGP_AJ_G0031687.1 mouse_genomes_project 7 14214554 14225431 + MGP_AJ_P0081860 Ap2s1 protein_coding protein_coding MGP_AJ_T0081861.1 MGP_AJ_G0031687.1 mouse_genomes_project 7 14214588 14225151 + MGP_AJ_P0081861 Ap2s1 protein_coding protein_coding MGP_AJ_T0081862.1 MGP_AJ_G0031687.1 mouse_genomes_project 7 14214616 14225071 + MGP_AJ_P0081862 Ap2s1 protein_coding nonsense_mediated_decay MGP_AJ_T0081863.1 MGP_AJ_G0031687.1 mouse_genomes_project 7 14214682 14224885 + Ap2s1 protein_coding processed_transcript MGP_AJ_T0081864.1 MGP_AJ_G0031687.1 mouse_genomes_project 7 14222900 14225431 + Ap2s1 protein_coding retained_intron MGP_AJ_T0083446.1 MGP_AJ_G0032084.1 mouse_genomes_project 7 38220868 38244060 + MGP_AJ_P0083446 Zfp619 protein_coding protein_coding MGP_AJ_T0102794.1 MGP_AJ_G0040535.1 mouse_genomes_project 7 15830217 15838525 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0087358.1 MGP_AJ_G0033122.1 mouse_genomes_project 7 138389424 138420739 + MGP_AJ_P0087358 Glrx3 protein_coding unknown_likely_coding MGP_AJ_T0087359.1 MGP_AJ_G0033122.1 mouse_genomes_project 7 138389431 138421145 + MGP_AJ_P0087359 Glrx3 protein_coding protein_coding MGP_AJ_T0087360.1 MGP_AJ_G0033122.1 mouse_genomes_project 7 138389439 138420739 + MGP_AJ_P0087360 Glrx3 protein_coding unknown_likely_coding MGP_AJ_T0010899.1 MGP_AJ_G0009021.1 mouse_genomes_project 7 78888476 78888573 + Mir7-2 miRNA miRNA MGP_AJ_T0084389.1 MGP_AJ_G0032331.1 mouse_genomes_project 7 66228599 66266186 - MGP_AJ_P0084389 Aldh1a3 protein_coding protein_coding MGP_AJ_T0084390.1 MGP_AJ_G0032331.1 mouse_genomes_project 7 66237602 66243710 - Aldh1a3 protein_coding retained_intron MGP_AJ_T0084391.1 MGP_AJ_G0032331.1 mouse_genomes_project 7 66239756 66257885 - MGP_AJ_P0084391 Aldh1a3 protein_coding protein_coding MGP_AJ_T0084392.1 MGP_AJ_G0032331.1 mouse_genomes_project 7 66246218 66265258 - Aldh1a3 protein_coding processed_transcript MGP_AJ_T0084393.1 MGP_AJ_G0032331.1 mouse_genomes_project 7 66247421 66264370 - Aldh1a3 protein_coding processed_transcript MGP_AJ_T0009011.1 MGP_AJ_G0007256.1 mouse_genomes_project 7 121415219 121419284 - 9030407P20Rik lincRNA lincRNA MGP_AJ_T0009012.1 MGP_AJ_G0007256.1 mouse_genomes_project 7 121415515 121419324 - 9030407P20Rik lincRNA lincRNA MGP_AJ_T0083787.1 MGP_AJ_G0032177.1 mouse_genomes_project 7 44455794 44465088 - MGP_AJ_P0083787 Rcn3 protein_coding protein_coding MGP_AJ_T0085517.1 MGP_AJ_G0032599.1 mouse_genomes_project 7 103059083 103060140 + MGP_AJ_P0085517 Olfr557 protein_coding protein_coding MGP_AJ_T0085072.1 MGP_AJ_G0032494.1 mouse_genomes_project 7 97511459 97534505 - MGP_AJ_P0085072 Usp35 protein_coding protein_coding MGP_AJ_T0085073.1 MGP_AJ_G0032494.1 mouse_genomes_project 7 97511459 97528448 - MGP_AJ_P0085073 Usp35 protein_coding protein_coding MGP_AJ_T0085074.1 MGP_AJ_G0032494.1 mouse_genomes_project 7 97511485 97518074 - Usp35 protein_coding processed_transcript MGP_AJ_T0085075.1 MGP_AJ_G0032494.1 mouse_genomes_project 7 97514552 97517105 - Usp35 protein_coding retained_intron MGP_AJ_T0085076.1 MGP_AJ_G0032494.1 mouse_genomes_project 7 97514667 97518075 - Usp35 protein_coding processed_transcript MGP_AJ_T0085077.1 MGP_AJ_G0032494.1 mouse_genomes_project 7 97521268 97526877 - Usp35 protein_coding retained_intron MGP_AJ_T0087741.1 MGP_AJ_G0033220.1 mouse_genomes_project 7 142637199 142661097 - MGP_AJ_P0087741 Muc6 protein_coding protein_coding MGP_AJ_T0087742.1 MGP_AJ_G0033220.1 mouse_genomes_project 7 142637724 142661097 - MGP_AJ_P0087742 Muc6 protein_coding protein_coding MGP_AJ_T0087743.1 MGP_AJ_G0033220.1 mouse_genomes_project 7 142637729 142661166 - MGP_AJ_P0087743 Muc6 protein_coding protein_coding MGP_AJ_T0011704.1 MGP_AJ_G0009826.1 mouse_genomes_project 7 144276528 144276752 + Gm27539 misc_RNA misc_RNA MGP_AJ_T0101447.1 MGP_AJ_G0039413.1 mouse_genomes_project 7 117054303 117054390 - Snord14a snoRNA snoRNA MGP_AJ_T0009070.1 MGP_AJ_G0007293.1 mouse_genomes_project 7 145919517 145922419 - Gm26793 lincRNA lincRNA MGP_AJ_T0086949.1 MGP_AJ_G0033036.1 mouse_genomes_project 7 128615882 128639402 + MGP_AJ_P0086949 Setd1a protein_coding protein_coding MGP_AJ_T0086950.1 MGP_AJ_G0033036.1 mouse_genomes_project 7 128616361 128623298 + MGP_AJ_P0086950 Setd1a protein_coding protein_coding MGP_AJ_T0086951.1 MGP_AJ_G0033036.1 mouse_genomes_project 7 128616601 128622925 + MGP_AJ_P0086951 Setd1a protein_coding protein_coding MGP_AJ_T0086952.1 MGP_AJ_G0033036.1 mouse_genomes_project 7 128616601 128639395 + MGP_AJ_P0086952 Setd1a protein_coding protein_coding MGP_AJ_T0086953.1 MGP_AJ_G0033036.1 mouse_genomes_project 7 128616908 128617779 + MGP_AJ_P0086953 Setd1a protein_coding protein_coding MGP_AJ_T0086954.1 MGP_AJ_G0033036.1 mouse_genomes_project 7 128617790 128621117 + Setd1a protein_coding processed_transcript MGP_AJ_T0005640.1 MGP_AJ_G0004747.1 mouse_genomes_project 7 79949064 79950863 + 5430400D12Rik bidirectional_promoter_lncRNA bidirectional_promoter_lncRNA MGP_AJ_T0081566.1 MGP_AJ_G0031567.1 mouse_genomes_project 7 3015114 3082461 + MGP_AJ_P0081566 protein_coding protein_coding MGP_AJ_T0015791.1 MGP_AJ_G0013886.1 mouse_genomes_project 7 37188277 37191875 - processed_pseudogene processed_pseudogene MGP_AJ_T0098719.1 MGP_AJ_G0036703.1 mouse_genomes_project 7 3512291 3512399 + n-R5s150 rRNA rRNA MGP_AJ_T0008845.1 MGP_AJ_G0007143.1 mouse_genomes_project 7 33588162 33594564 - Gm45229 lincRNA lincRNA MGP_AJ_T0018380.1 MGP_AJ_G0015653.1 mouse_genomes_project 7 70251089 70297029 + processed_transcript antisense MGP_AJ_T0018381.1 MGP_AJ_G0015653.1 mouse_genomes_project 7 70272367 70297033 + processed_transcript retained_intron MGP_AJ_T0018382.1 MGP_AJ_G0015653.1 mouse_genomes_project 7 70272367 70288369 + processed_transcript antisense MGP_AJ_T0018383.1 MGP_AJ_G0015653.1 mouse_genomes_project 7 70274178 70274716 + processed_transcript processed_transcript MGP_AJ_T0083455.1 MGP_AJ_G0032088.1 mouse_genomes_project 7 40210625 40242648 - MGP_AJ_P0083455 Vmn2r62 protein_coding protein_coding MGP_AJ_T0081655.1 MGP_AJ_G0031618.1 mouse_genomes_project 7 9643843 9651442 - MGP_AJ_P0081655 Zfp551 protein_coding protein_coding MGP_AJ_T0081656.1 MGP_AJ_G0031618.1 mouse_genomes_project 7 9645639 9651179 - MGP_AJ_P0081656 Zfp551 protein_coding protein_coding MGP_AJ_T0081657.1 MGP_AJ_G0031618.1 mouse_genomes_project 7 9645792 9651130 - Zfp551 protein_coding processed_transcript MGP_AJ_T0002320.1 MGP_AJ_G0002231.1 mouse_genomes_project 7 144109834 144109893 + TEC TEC MGP_AJ_T0086727.1 MGP_AJ_G0032990.1 mouse_genomes_project 7 127712001 127717563 - MGP_AJ_P0086727 Tmem219 protein_coding protein_coding MGP_AJ_T0086728.1 MGP_AJ_G0032990.1 mouse_genomes_project 7 127712048 127723234 - MGP_AJ_P0086728 Tmem219 protein_coding protein_coding MGP_AJ_T0086729.1 MGP_AJ_G0032990.1 mouse_genomes_project 7 127712050 127715119 - Tmem219 protein_coding retained_intron MGP_AJ_T0086730.1 MGP_AJ_G0032990.1 mouse_genomes_project 7 127712050 127724063 - MGP_AJ_P0086730 Tmem219 protein_coding protein_coding MGP_AJ_T0086731.1 MGP_AJ_G0032990.1 mouse_genomes_project 7 127712050 127724086 - MGP_AJ_P0086731 Tmem219 protein_coding protein_coding MGP_AJ_T0086732.1 MGP_AJ_G0032990.1 mouse_genomes_project 7 127712050 127750096 - MGP_AJ_P0086732 Tmem219 protein_coding protein_coding MGP_AJ_T0086733.1 MGP_AJ_G0032990.1 mouse_genomes_project 7 127712052 127722686 - MGP_AJ_P0086733 Tmem219 protein_coding protein_coding MGP_AJ_T0086734.1 MGP_AJ_G0032990.1 mouse_genomes_project 7 127714838 127750098 - MGP_AJ_P0086734 Tmem219 protein_coding protein_coding MGP_AJ_T0086735.1 MGP_AJ_G0032990.1 mouse_genomes_project 7 127716787 127724091 - Tmem219 protein_coding retained_intron MGP_AJ_T0086736.1 MGP_AJ_G0032990.1 mouse_genomes_project 7 127717409 127750081 - MGP_AJ_P0086736 Tmem219 protein_coding protein_coding MGP_AJ_T0100133.1 MGP_AJ_G0038099.1 mouse_genomes_project 7 2234293 2234400 - Gm23942 snRNA snRNA MGP_AJ_T0011679.1 MGP_AJ_G0009801.1 mouse_genomes_project 7 10633789 10634057 + Gm23499 misc_RNA misc_RNA MGP_AJ_T0102749.1 MGP_AJ_G0040490.1 mouse_genomes_project 7 7708507 7708881 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0102775.1 MGP_AJ_G0040516.1 mouse_genomes_project 7 11418713 11441621 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0010918.1 MGP_AJ_G0009040.1 mouse_genomes_project 7 127876610 127876700 - Gm44343 miRNA miRNA MGP_AJ_T0083990.1 MGP_AJ_G0032231.1 mouse_genomes_project 7 45271601 45273080 + Kdelr1 protein_coding processed_transcript MGP_AJ_T0083991.1 MGP_AJ_G0032231.1 mouse_genomes_project 7 45271725 45282466 + MGP_AJ_P0083991 Kdelr1 protein_coding protein_coding MGP_AJ_T0083992.1 MGP_AJ_G0032231.1 mouse_genomes_project 7 45280169 45282085 + Kdelr1 protein_coding processed_transcript MGP_AJ_T0083244.1 MGP_AJ_G0032041.1 mouse_genomes_project 7 29533997 29548911 + MGP_AJ_P0083244 Scgb2b2 protein_coding protein_coding MGP_AJ_T0083246.1 MGP_AJ_G0032041.1 mouse_genomes_project 7 29546706 29548911 + MGP_AJ_P0083246 Scgb2b2 protein_coding protein_coding MGP_AJ_T0084274.1 MGP_AJ_G0032308.1 mouse_genomes_project 7 62342633 62345270 - MGP_AJ_P0084274 Peg12 protein_coding protein_coding MGP_AJ_T0010838.1 MGP_AJ_G0008960.1 mouse_genomes_project 7 16823626 16823724 + Mir330 miRNA miRNA MGP_AJ_T0015926.1 MGP_AJ_G0014021.1 mouse_genomes_project 7 123831604 123832219 + processed_pseudogene processed_pseudogene MGP_AJ_T0087896.1 MGP_AJ_G0033252.1 mouse_genomes_project 7 144051267 144056676 - MGP_AJ_P0087896 Trpm5 protein_coding protein_coding MGP_AJ_T0087903.1 MGP_AJ_G0033252.1 mouse_genomes_project 7 144053205 144056152 - MGP_AJ_P0087903 Trpm5 protein_coding protein_coding MGP_AJ_T0087904.1 MGP_AJ_G0033252.1 mouse_genomes_project 7 144053331 144056968 - Trpm5 protein_coding retained_intron MGP_AJ_T0087905.1 MGP_AJ_G0033252.1 mouse_genomes_project 7 144053643 144069329 - Trpm5 protein_coding retained_intron MGP_AJ_T0087906.1 MGP_AJ_G0033252.1 mouse_genomes_project 7 144053903 144076757 - MGP_AJ_P0087906 Trpm5 protein_coding protein_coding MGP_AJ_T0087907.1 MGP_AJ_G0033252.1 mouse_genomes_project 7 144054292 144069244 - Trpm5 protein_coding retained_intron MGP_AJ_T0087908.1 MGP_AJ_G0033252.1 mouse_genomes_project 7 144054456 144076721 - MGP_AJ_P0087908 Trpm5 protein_coding nonsense_mediated_decay MGP_AJ_T0087909.1 MGP_AJ_G0033252.1 mouse_genomes_project 7 144062830 144064037 - Trpm5 protein_coding retained_intron MGP_AJ_T0085971.1 MGP_AJ_G0032845.1 mouse_genomes_project 7 111545440 111602968 - MGP_AJ_P0085971 Mrvi1 protein_coding protein_coding MGP_AJ_T0085972.1 MGP_AJ_G0032845.1 mouse_genomes_project 7 111545444 111657612 - MGP_AJ_P0085972 Mrvi1 protein_coding protein_coding MGP_AJ_T0085973.1 MGP_AJ_G0032845.1 mouse_genomes_project 7 111545446 111621034 - MGP_AJ_P0085973 Mrvi1 protein_coding protein_coding MGP_AJ_T0085974.1 MGP_AJ_G0032845.1 mouse_genomes_project 7 111596354 111600254 - Mrvi1 protein_coding processed_transcript MGP_AJ_T0085975.1 MGP_AJ_G0032845.1 mouse_genomes_project 7 111600410 111657209 - MGP_AJ_P0085975 Mrvi1 protein_coding protein_coding MGP_AJ_T0085976.1 MGP_AJ_G0032845.1 mouse_genomes_project 7 111600900 111603237 - Mrvi1 protein_coding retained_intron MGP_AJ_T0085977.1 MGP_AJ_G0032845.1 mouse_genomes_project 7 111602949 111657355 - MGP_AJ_P0085977 Mrvi1 protein_coding protein_coding MGP_AJ_T0085863.1 MGP_AJ_G0032815.1 mouse_genomes_project 7 109469695 109470640 - MGP_AJ_P0085863 Olfr516 protein_coding protein_coding MGP_AJ_T0083600.1 MGP_AJ_G0032135.1 mouse_genomes_project 7 43603051 43608484 - MGP_AJ_P0083600 Acpt protein_coding protein_coding MGP_AJ_T0083601.1 MGP_AJ_G0032135.1 mouse_genomes_project 7 43604194 43608484 - MGP_AJ_P0083601 Acpt protein_coding protein_coding MGP_AJ_T0083602.1 MGP_AJ_G0032135.1 mouse_genomes_project 7 43604201 43608311 - MGP_AJ_P0083602 Acpt protein_coding protein_coding MGP_AJ_T0099086.1 MGP_AJ_G0037059.1 mouse_genomes_project 7 3386259 3386842 + Gm16306 sense_intronic sense_intronic MGP_AJ_T0085449.1 MGP_AJ_G0032574.1 mouse_genomes_project 7 102414091 102433264 + MGP_AJ_P0085449 Xndc1 protein_coding protein_coding MGP_AJ_T0085450.1 MGP_AJ_G0032574.1 mouse_genomes_project 7 102414100 102428839 + Xndc1 protein_coding retained_intron MGP_AJ_T0085451.1 MGP_AJ_G0032574.1 mouse_genomes_project 7 102414102 102418581 + Xndc1 protein_coding processed_transcript MGP_AJ_T0085452.1 MGP_AJ_G0032574.1 mouse_genomes_project 7 102414174 102426460 + MGP_AJ_P0085452 Xndc1 protein_coding protein_coding MGP_AJ_T0085455.1 MGP_AJ_G0032574.1 mouse_genomes_project 7 102414339 102432583 + MGP_AJ_P0085455 Xndc1 protein_coding protein_coding MGP_AJ_T0085459.1 MGP_AJ_G0032574.1 mouse_genomes_project 7 102424493 102427810 + Xndc1 protein_coding retained_intron MGP_AJ_T0085460.1 MGP_AJ_G0032574.1 mouse_genomes_project 7 102427327 102433267 + MGP_AJ_P0085460 Xndc1 protein_coding nonsense_mediated_decay MGP_AJ_T0085461.1 MGP_AJ_G0032574.1 mouse_genomes_project 7 102430559 102432093 + Xndc1 protein_coding processed_transcript MGP_AJ_T0085462.1 MGP_AJ_G0032574.1 mouse_genomes_project 7 102430562 102432023 + Xndc1 protein_coding retained_intron MGP_AJ_T0084494.1 MGP_AJ_G0032351.1 mouse_genomes_project 7 74157222 74444633 - MGP_AJ_P0084494 Slco3a1 protein_coding protein_coding MGP_AJ_T0084495.1 MGP_AJ_G0032351.1 mouse_genomes_project 7 74163660 74444614 - MGP_AJ_P0084495 Slco3a1 protein_coding protein_coding MGP_AJ_T0084496.1 MGP_AJ_G0032351.1 mouse_genomes_project 7 74177173 74444780 - MGP_AJ_P0084496 Slco3a1 protein_coding protein_coding MGP_AJ_T0084497.1 MGP_AJ_G0032351.1 mouse_genomes_project 7 74212742 74229719 - Slco3a1 protein_coding retained_intron MGP_AJ_T0084498.1 MGP_AJ_G0032351.1 mouse_genomes_project 7 74229273 74444474 - MGP_AJ_P0084498 Slco3a1 protein_coding protein_coding MGP_AJ_T0084499.1 MGP_AJ_G0032351.1 mouse_genomes_project 7 74243676 74392452 - Slco3a1 protein_coding retained_intron MGP_AJ_T0084500.1 MGP_AJ_G0032351.1 mouse_genomes_project 7 74392355 74442594 - MGP_AJ_P0084500 Slco3a1 protein_coding protein_coding MGP_AJ_T0084501.1 MGP_AJ_G0032351.1 mouse_genomes_project 7 74392502 74419704 - Slco3a1 protein_coding processed_transcript MGP_AJ_T0083529.1 MGP_AJ_G0032114.1 mouse_genomes_project 7 42619022 42632891 - MGP_AJ_P0083529 4931406B18Rik protein_coding protein_coding MGP_AJ_T0083530.1 MGP_AJ_G0032114.1 mouse_genomes_project 7 42620806 42632585 - MGP_AJ_P0083530 4931406B18Rik protein_coding nonsense_mediated_decay MGP_AJ_T0083531.1 MGP_AJ_G0032114.1 mouse_genomes_project 7 42621552 42632880 - MGP_AJ_P0083531 4931406B18Rik protein_coding nonsense_mediated_decay MGP_AJ_T0083532.1 MGP_AJ_G0032114.1 mouse_genomes_project 7 42623618 42631175 - MGP_AJ_P0083532 4931406B18Rik protein_coding protein_coding MGP_AJ_T0083533.1 MGP_AJ_G0032114.1 mouse_genomes_project 7 42624700 42632886 - 4931406B18Rik protein_coding retained_intron MGP_AJ_T0083534.1 MGP_AJ_G0032114.1 mouse_genomes_project 7 42625348 42632893 - MGP_AJ_P0083534 4931406B18Rik protein_coding protein_coding MGP_AJ_T0083535.1 MGP_AJ_G0032114.1 mouse_genomes_project 7 42628192 42632647 - MGP_AJ_P0083535 4931406B18Rik protein_coding protein_coding MGP_AJ_T0005243.1 MGP_AJ_G0004456.1 mouse_genomes_project 7 83686325 83721109 - Gm16638 antisense antisense MGP_AJ_T0008982.1 MGP_AJ_G0007240.1 mouse_genomes_project 7 99507116 99517145 - Gm26705 lincRNA lincRNA MGP_AJ_T0008810.1 MGP_AJ_G0007112.1 mouse_genomes_project 7 873764 875492 + 1700095K22Rik lincRNA lincRNA MGP_AJ_T0082272.1 MGP_AJ_G0031818.1 mouse_genomes_project 7 22467777 22472011 - MGP_AJ_P0082272 Tex101 protein_coding protein_coding MGP_AJ_T0083015.1 MGP_AJ_G0032002.1 mouse_genomes_project 7 28744559 28757687 - MGP_AJ_P0083015 Proser3 protein_coding protein_coding MGP_AJ_T0083016.1 MGP_AJ_G0032002.1 mouse_genomes_project 7 28744633 28754600 - MGP_AJ_P0083016 Proser3 protein_coding protein_coding MGP_AJ_T0083017.1 MGP_AJ_G0032002.1 mouse_genomes_project 7 28747588 28757237 - Proser3 protein_coding retained_intron MGP_AJ_T0083018.1 MGP_AJ_G0032002.1 mouse_genomes_project 7 28753973 28757233 - MGP_AJ_P0083018 Proser3 protein_coding protein_coding MGP_AJ_T0084920.1 MGP_AJ_G0032435.1 mouse_genomes_project 7 84342412 84505318 - MGP_AJ_P0084920 Arnt2 protein_coding protein_coding MGP_AJ_T0015923.1 MGP_AJ_G0014018.1 mouse_genomes_project 7 123054740 123055464 - processed_pseudogene processed_pseudogene MGP_AJ_T0082428.1 MGP_AJ_G0031853.1 mouse_genomes_project 7 23540393 23546415 - MGP_AJ_P0082428 Tmem91 protein_coding protein_coding MGP_AJ_T0082429.1 MGP_AJ_G0031853.1 mouse_genomes_project 7 23540396 23544722 - MGP_AJ_P0082429 Tmem91 protein_coding protein_coding MGP_AJ_T0082430.1 MGP_AJ_G0031853.1 mouse_genomes_project 7 23540496 23546339 - MGP_AJ_P0082430 Tmem91 protein_coding protein_coding MGP_AJ_T0082431.1 MGP_AJ_G0031853.1 mouse_genomes_project 7 23540496 23546296 - MGP_AJ_P0082431 Tmem91 protein_coding protein_coding MGP_AJ_T0082432.1 MGP_AJ_G0031853.1 mouse_genomes_project 7 23541298 23546368 - Tmem91 protein_coding retained_intron MGP_AJ_T0082433.1 MGP_AJ_G0031853.1 mouse_genomes_project 7 23542445 23546367 - Tmem91 protein_coding retained_intron MGP_AJ_T0100189.1 MGP_AJ_G0038155.1 mouse_genomes_project 7 129600575 129600677 + Gm23783 snRNA snRNA MGP_AJ_T0085516.1 MGP_AJ_G0032598.1 mouse_genomes_project 7 103037203 103046936 - MGP_AJ_P0085516 Trim68 protein_coding protein_coding MGP_AJ_T0015931.1 MGP_AJ_G0014026.1 mouse_genomes_project 7 127057290 127057538 - processed_pseudogene processed_pseudogene MGP_AJ_T0087007.1 MGP_AJ_G0033048.1 mouse_genomes_project 7 128771234 128775623 - MGP_AJ_P0087007 Prss8 protein_coding protein_coding MGP_AJ_T0087008.1 MGP_AJ_G0033048.1 mouse_genomes_project 7 128771234 128775623 - MGP_AJ_P0087008 Prss8 protein_coding protein_coding MGP_AJ_T0087009.1 MGP_AJ_G0033048.1 mouse_genomes_project 7 128772280 128775614 - MGP_AJ_P0087009 Prss8 protein_coding nonsense_mediated_decay MGP_AJ_T0081559.1 MGP_AJ_G0031560.1 mouse_genomes_project 7 2088339 2089352 - MGP_AJ_P0081559 Rasl2-9 protein_coding protein_coding MGP_AJ_T0085653.1 MGP_AJ_G0032701.1 mouse_genomes_project 7 105010604 105011568 + MGP_AJ_P0085653 Olfr661 protein_coding protein_coding MGP_AJ_T0083775.1 MGP_AJ_G0032172.1 mouse_genomes_project 7 44370554 44385282 - Scaf1 protein_coding retained_intron MGP_AJ_T0083776.1 MGP_AJ_G0032172.1 mouse_genomes_project 7 44370554 44387672 - MGP_AJ_P0083776 Scaf1 protein_coding protein_coding MGP_AJ_T0083777.1 MGP_AJ_G0032172.1 mouse_genomes_project 7 44370554 44385713 - MGP_AJ_P0083777 Scaf1 protein_coding protein_coding MGP_AJ_T0083778.1 MGP_AJ_G0032172.1 mouse_genomes_project 7 44377870 44387440 - Scaf1 protein_coding processed_transcript MGP_AJ_T0083779.1 MGP_AJ_G0032172.1 mouse_genomes_project 7 44383466 44384870 - Scaf1 protein_coding retained_intron MGP_AJ_T0083780.1 MGP_AJ_G0032172.1 mouse_genomes_project 7 44384560 44387166 - MGP_AJ_P0083780 Scaf1 protein_coding protein_coding MGP_AJ_T0083781.1 MGP_AJ_G0032172.1 mouse_genomes_project 7 44385512 44386245 - Scaf1 protein_coding processed_transcript MGP_AJ_T0084175.1 MGP_AJ_G0032287.1 mouse_genomes_project 7 51942834 51951644 - MGP_AJ_P0084175 Svip protein_coding protein_coding MGP_AJ_T0085208.1 MGP_AJ_G0032524.1 mouse_genomes_project 7 99719687 99727647 + MGP_AJ_P0085208 Klhl35 protein_coding protein_coding MGP_AJ_T0085209.1 MGP_AJ_G0032524.1 mouse_genomes_project 7 99722590 99725411 + MGP_AJ_P0085209 Klhl35 protein_coding nonsense_mediated_decay MGP_AJ_T0085210.1 MGP_AJ_G0032524.1 mouse_genomes_project 7 99723579 99725498 + Klhl35 protein_coding retained_intron MGP_AJ_T0085211.1 MGP_AJ_G0032524.1 mouse_genomes_project 7 99725450 99727229 + MGP_AJ_P0085211 Klhl35 protein_coding protein_coding MGP_AJ_T0082162.1 MGP_AJ_G0031776.1 mouse_genomes_project 7 17527490 17541462 - MGP_AJ_P0082162 Ceacam19 protein_coding protein_coding MGP_AJ_T0015729.1 MGP_AJ_G0013824.1 mouse_genomes_project 7 14631297 14631899 - processed_pseudogene processed_pseudogene MGP_AJ_T0085666.1 MGP_AJ_G0032714.1 mouse_genomes_project 7 105402236 105403190 + MGP_AJ_P0085666 Olfr676 protein_coding protein_coding MGP_AJ_T0084073.1 MGP_AJ_G0032252.1 mouse_genomes_project 7 46220497 46248420 + MGP_AJ_P0084073 Gtf2h1 protein_coding protein_coding MGP_AJ_T0084074.1 MGP_AJ_G0032252.1 mouse_genomes_project 7 46220508 46229405 + MGP_AJ_P0084074 Gtf2h1 protein_coding protein_coding MGP_AJ_T0084075.1 MGP_AJ_G0032252.1 mouse_genomes_project 7 46221065 46247895 + MGP_AJ_P0084075 Gtf2h1 protein_coding protein_coding MGP_AJ_T0084076.1 MGP_AJ_G0032252.1 mouse_genomes_project 7 46226064 46247529 + MGP_AJ_P0084076 Gtf2h1 protein_coding nonsense_mediated_decay MGP_AJ_T0084077.1 MGP_AJ_G0032252.1 mouse_genomes_project 7 46232829 46239796 + Gtf2h1 protein_coding retained_intron MGP_AJ_T0015685.1 MGP_AJ_G0013780.1 mouse_genomes_project 7 823386 824260 - processed_pseudogene processed_pseudogene MGP_AJ_T0082865.1 MGP_AJ_G0031962.1 mouse_genomes_project 7 27695337 27715011 + MGP_AJ_P0082865 protein_coding protein_coding MGP_AJ_T0082866.1 MGP_AJ_G0031962.1 mouse_genomes_project 7 27713669 27715009 + MGP_AJ_P0082866 protein_coding protein_coding MGP_AJ_T0082911.1 MGP_AJ_G0031977.1 mouse_genomes_project 7 28301603 28310747 + Zfp260 protein_coding processed_transcript MGP_AJ_T0082912.1 MGP_AJ_G0031977.1 mouse_genomes_project 7 28301620 28314079 + MGP_AJ_P0082912 Zfp260 protein_coding protein_coding MGP_AJ_T0082913.1 MGP_AJ_G0031977.1 mouse_genomes_project 7 28301988 28306659 + Zfp260 protein_coding retained_intron MGP_AJ_T0082914.1 MGP_AJ_G0031977.1 mouse_genomes_project 7 28301995 28311215 + MGP_AJ_P0082914 Zfp260 protein_coding protein_coding MGP_AJ_T0082915.1 MGP_AJ_G0031977.1 mouse_genomes_project 7 28302004 28314076 + Zfp260 protein_coding processed_transcript MGP_AJ_T0082916.1 MGP_AJ_G0031977.1 mouse_genomes_project 7 28302011 28314071 + MGP_AJ_P0082916 Zfp260 protein_coding protein_coding MGP_AJ_T0082917.1 MGP_AJ_G0031977.1 mouse_genomes_project 7 28304702 28306648 + Zfp260 protein_coding retained_intron MGP_AJ_T0081610.1 MGP_AJ_G0031586.1 mouse_genomes_project 7 3559870 3560797 + MGP_AJ_P0081610 Olfr1350 protein_coding protein_coding MGP_AJ_T0083944.1 MGP_AJ_G0032219.1 mouse_genomes_project 7 45095869 45100630 + MGP_AJ_P0083944 Car11 protein_coding protein_coding MGP_AJ_T0085586.1 MGP_AJ_G0032662.1 mouse_genomes_project 7 104339947 104340895 + MGP_AJ_P0085586 protein_coding protein_coding MGP_AJ_T0084224.1 MGP_AJ_G0032295.1 mouse_genomes_project 7 56000578 56017334 + MGP_AJ_P0084224 Herc2 protein_coding protein_coding MGP_AJ_T0084225.1 MGP_AJ_G0032295.1 mouse_genomes_project 7 56000635 56177520 + MGP_AJ_P0084225 Herc2 protein_coding protein_coding MGP_AJ_T0084226.1 MGP_AJ_G0032295.1 mouse_genomes_project 7 56000771 56177483 + MGP_AJ_P0084226 Herc2 protein_coding protein_coding MGP_AJ_T0084227.1 MGP_AJ_G0032295.1 mouse_genomes_project 7 56001148 56062981 + MGP_AJ_P0084227 Herc2 protein_coding protein_coding MGP_AJ_T0084228.1 MGP_AJ_G0032295.1 mouse_genomes_project 7 56001260 56176852 + MGP_AJ_P0084228 Herc2 protein_coding protein_coding MGP_AJ_T0084229.1 MGP_AJ_G0032295.1 mouse_genomes_project 7 56001330 56022282 + Herc2 protein_coding retained_intron MGP_AJ_T0084230.1 MGP_AJ_G0032295.1 mouse_genomes_project 7 56105332 56111003 + Herc2 protein_coding processed_transcript MGP_AJ_T0084231.1 MGP_AJ_G0032295.1 mouse_genomes_project 7 56166219 56176821 + MGP_AJ_P0084231 Herc2 protein_coding protein_coding MGP_AJ_T0083326.1 MGP_AJ_G0032063.1 mouse_genomes_project 7 33638499 33653437 + MGP_AJ_P0083326 Slc7a10 protein_coding protein_coding MGP_AJ_T0083327.1 MGP_AJ_G0032063.1 mouse_genomes_project 7 33638499 33647770 + MGP_AJ_P0083327 Slc7a10 protein_coding protein_coding MGP_AJ_T0083328.1 MGP_AJ_G0032063.1 mouse_genomes_project 7 33638535 33653233 + MGP_AJ_P0083328 Slc7a10 protein_coding nonsense_mediated_decay MGP_AJ_T0083329.1 MGP_AJ_G0032063.1 mouse_genomes_project 7 33638596 33650270 + MGP_AJ_P0083329 Slc7a10 protein_coding nonsense_mediated_decay MGP_AJ_T0083330.1 MGP_AJ_G0032063.1 mouse_genomes_project 7 33651233 33653214 + MGP_AJ_P0083330 Slc7a10 protein_coding protein_coding MGP_AJ_T0083700.1 MGP_AJ_G0032154.1 mouse_genomes_project 7 44069692 44080810 + MGP_AJ_P0083700 Izumo2 protein_coding protein_coding MGP_AJ_T0102792.1 MGP_AJ_G0040533.1 mouse_genomes_project 7 15145026 15151451 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0101456.1 MGP_AJ_G0039422.1 mouse_genomes_project 7 142379849 142379979 - Gm25725 snoRNA snoRNA MGP_AJ_T0083772.1 MGP_AJ_G0032170.1 mouse_genomes_project 7 44359030 44365401 - MGP_AJ_P0083772 Bcl2l12 protein_coding protein_coding MGP_AJ_T0008890.1 MGP_AJ_G0007177.1 mouse_genomes_project 7 63938420 63943779 + Gm20670 lincRNA lincRNA MGP_AJ_T0102063.1 MGP_AJ_G0039847.1 mouse_genomes_project 7 11849841 11901672 - transcribed_unprocessed_pseudogene processed_transcript MGP_AJ_T0102064.1 MGP_AJ_G0039847.1 mouse_genomes_project 7 11851780 11901722 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_AJ_T0087228.1 MGP_AJ_G0033089.1 mouse_genomes_project 7 132462301 132470116 + MGP_AJ_P0087228 Hmx2 protein_coding protein_coding MGP_AJ_T0087229.1 MGP_AJ_G0033089.1 mouse_genomes_project 7 132467589 132470116 + MGP_AJ_P0087229 Hmx2 protein_coding protein_coding MGP_AJ_T0085226.1 MGP_AJ_G0032527.1 mouse_genomes_project 7 99882504 99885526 - MGP_AJ_P0085226 Tpbgl protein_coding protein_coding MGP_AJ_T0010907.1 MGP_AJ_G0009029.1 mouse_genomes_project 7 101174201 101174305 - Mir3102 miRNA miRNA MGP_AJ_T0083522.1 MGP_AJ_G0032112.1 mouse_genomes_project 7 42589939 42598808 + MGP_AJ_P0083522 Vsig10l protein_coding protein_coding MGP_AJ_T0083523.1 MGP_AJ_G0032112.1 mouse_genomes_project 7 42590021 42597833 + MGP_AJ_P0083523 Vsig10l protein_coding protein_coding MGP_AJ_T0083524.1 MGP_AJ_G0032112.1 mouse_genomes_project 7 42591465 42592122 + Vsig10l protein_coding retained_intron MGP_AJ_T0083525.1 MGP_AJ_G0032112.1 mouse_genomes_project 7 42592502 42594467 + Vsig10l protein_coding processed_transcript MGP_AJ_T0083526.1 MGP_AJ_G0032112.1 mouse_genomes_project 7 42594403 42597788 + MGP_AJ_P0083526 Vsig10l protein_coding nonsense_mediated_decay MGP_AJ_T0083251.1 MGP_AJ_G0032047.1 mouse_genomes_project 7 32363797 32365836 - MGP_AJ_P0083251 Scgb2b26 protein_coding protein_coding MGP_AJ_T0085897.1 MGP_AJ_G0032827.1 mouse_genomes_project 7 110166370 110259666 - MGP_AJ_P0085897 St5 protein_coding protein_coding MGP_AJ_T0085898.1 MGP_AJ_G0032827.1 mouse_genomes_project 7 110166370 110259666 - MGP_AJ_P0085898 St5 protein_coding protein_coding MGP_AJ_T0085899.1 MGP_AJ_G0032827.1 mouse_genomes_project 7 110166379 110259087 - MGP_AJ_P0085899 St5 protein_coding protein_coding MGP_AJ_T0085900.1 MGP_AJ_G0032827.1 mouse_genomes_project 7 110166379 110259087 - MGP_AJ_P0085900 St5 protein_coding protein_coding MGP_AJ_T0015693.1 MGP_AJ_G0013788.1 mouse_genomes_project 7 1338264 1338727 + processed_pseudogene processed_pseudogene MGP_AJ_T0015947.1 MGP_AJ_G0014042.1 mouse_genomes_project 7 129903067 129903825 - processed_pseudogene processed_pseudogene MGP_AJ_T0015709.1 MGP_AJ_G0013804.1 mouse_genomes_project 7 10427339 10428611 + processed_pseudogene processed_pseudogene MGP_AJ_T0009042.1 MGP_AJ_G0007275.1 mouse_genomes_project 7 128828524 128830843 - Gm26690 lincRNA lincRNA MGP_AJ_T0002204.1 MGP_AJ_G0002116.1 mouse_genomes_project 7 33499081 33499698 - TEC TEC MGP_AJ_T0081596.1 MGP_AJ_G0031575.1 mouse_genomes_project 7 3356536 3364250 + MGP_AJ_P0081596 Zfp78 protein_coding protein_coding MGP_AJ_T0081597.1 MGP_AJ_G0031575.1 mouse_genomes_project 7 3356536 3364250 + MGP_AJ_P0081597 Zfp78 protein_coding protein_coding MGP_AJ_T0010896.1 MGP_AJ_G0009018.1 mouse_genomes_project 7 73697819 73697871 + Mir7234 miRNA miRNA MGP_AJ_T0008905.1 MGP_AJ_G0007187.1 mouse_genomes_project 7 68195685 68210229 - Gm16158 lincRNA lincRNA MGP_AJ_T0008906.1 MGP_AJ_G0007187.1 mouse_genomes_project 7 68195685 68210210 - Gm16158 lincRNA lincRNA MGP_AJ_T0085571.1 MGP_AJ_G0032649.1 mouse_genomes_project 7 104083049 104084182 - MGP_AJ_P0085571 Olfr624 protein_coding protein_coding MGP_AJ_T0018419.1 MGP_AJ_G0015669.1 mouse_genomes_project 7 127769820 127780517 + Gm21984 processed_transcript processed_transcript MGP_AJ_T0015759.1 MGP_AJ_G0013854.1 mouse_genomes_project 7 25150626 25150873 - processed_pseudogene processed_pseudogene MGP_AJ_T0087594.1 MGP_AJ_G0033198.1 mouse_genomes_project 7 142200645 142204683 - MGP_AJ_P0087594 Lmntd2 protein_coding protein_coding MGP_AJ_T0087595.1 MGP_AJ_G0033198.1 mouse_genomes_project 7 142200645 142204685 - MGP_AJ_P0087595 Lmntd2 protein_coding protein_coding MGP_AJ_T0083410.1 MGP_AJ_G0032077.1 mouse_genomes_project 7 35184593 35262776 + MGP_AJ_P0083410 Tshz3 protein_coding protein_coding MGP_AJ_T0083411.1 MGP_AJ_G0032077.1 mouse_genomes_project 7 35184713 35188613 + Tshz3 protein_coding processed_transcript MGP_AJ_T0084420.1 MGP_AJ_G0032337.1 mouse_genomes_project 7 67074193 67214474 - MGP_AJ_P0084420 Mef2a protein_coding protein_coding MGP_AJ_T0084421.1 MGP_AJ_G0032337.1 mouse_genomes_project 7 67074948 67214474 - MGP_AJ_P0084421 Mef2a protein_coding protein_coding MGP_AJ_T0084422.1 MGP_AJ_G0032337.1 mouse_genomes_project 7 67075114 67157502 - MGP_AJ_P0084422 Mef2a protein_coding nonsense_mediated_decay MGP_AJ_T0084423.1 MGP_AJ_G0032337.1 mouse_genomes_project 7 67077069 67214474 - MGP_AJ_P0084423 Mef2a protein_coding protein_coding MGP_AJ_T0084424.1 MGP_AJ_G0032337.1 mouse_genomes_project 7 67077177 67214474 - MGP_AJ_P0084424 Mef2a protein_coding nonsense_mediated_decay MGP_AJ_T0084425.1 MGP_AJ_G0032337.1 mouse_genomes_project 7 67077237 67214474 - MGP_AJ_P0084425 Mef2a protein_coding protein_coding MGP_AJ_T0084426.1 MGP_AJ_G0032337.1 mouse_genomes_project 7 67094839 67214474 - MGP_AJ_P0084426 Mef2a protein_coding protein_coding MGP_AJ_T0084427.1 MGP_AJ_G0032337.1 mouse_genomes_project 7 67190471 67214443 - Mef2a protein_coding processed_transcript MGP_AJ_T0085535.1 MGP_AJ_G0032615.1 mouse_genomes_project 7 103333495 103334437 - MGP_AJ_P0085535 Olfr578 protein_coding protein_coding MGP_AJ_T0102804.1 MGP_AJ_G0040544.1 mouse_genomes_project 7 29513923 29516183 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0081915.1 MGP_AJ_G0031699.1 mouse_genomes_project 7 14485880 14508934 - MGP_AJ_P0081915 Ppp5c protein_coding protein_coding MGP_AJ_T0081916.1 MGP_AJ_G0031699.1 mouse_genomes_project 7 14486347 14488319 - Ppp5c protein_coding retained_intron MGP_AJ_T0081917.1 MGP_AJ_G0031699.1 mouse_genomes_project 7 14488388 14496727 - Ppp5c protein_coding retained_intron MGP_AJ_T0081918.1 MGP_AJ_G0031699.1 mouse_genomes_project 7 14489021 14509045 - Ppp5c protein_coding processed_transcript MGP_AJ_T0081919.1 MGP_AJ_G0031699.1 mouse_genomes_project 7 14489030 14490418 - Ppp5c protein_coding retained_intron MGP_AJ_T0081920.1 MGP_AJ_G0031699.1 mouse_genomes_project 7 14489826 14509015 - Ppp5c protein_coding processed_transcript MGP_AJ_T0081921.1 MGP_AJ_G0031699.1 mouse_genomes_project 7 14489850 14491380 - Ppp5c protein_coding retained_intron MGP_AJ_T0081922.1 MGP_AJ_G0031699.1 mouse_genomes_project 7 14491182 14505816 - Ppp5c protein_coding processed_transcript MGP_AJ_T0081923.1 MGP_AJ_G0031699.1 mouse_genomes_project 7 14496719 14508736 - Ppp5c protein_coding processed_transcript MGP_AJ_T0081924.1 MGP_AJ_G0031699.1 mouse_genomes_project 7 14503446 14508910 - Ppp5c protein_coding processed_transcript MGP_AJ_T0086276.1 MGP_AJ_G0032908.1 mouse_genomes_project 7 120910710 120920589 + MGP_AJ_P0086276 Anks4b protein_coding protein_coding MGP_AJ_T0002282.1 MGP_AJ_G0002193.1 mouse_genomes_project 7 80251271 80253556 + TEC TEC MGP_AJ_T0002218.1 MGP_AJ_G0002130.1 mouse_genomes_project 7 39528302 39529846 - TEC TEC MGP_AJ_T0082935.1 MGP_AJ_G0031984.1 mouse_genomes_project 7 28443697 28444749 + MGP_AJ_P0082935 Polr2i protein_coding protein_coding MGP_AJ_T0082936.1 MGP_AJ_G0031984.1 mouse_genomes_project 7 28443697 28444750 + MGP_AJ_P0082936 Polr2i protein_coding protein_coding MGP_AJ_T0082937.1 MGP_AJ_G0031984.1 mouse_genomes_project 7 28443707 28444747 + Polr2i protein_coding retained_intron MGP_AJ_T0082938.1 MGP_AJ_G0031984.1 mouse_genomes_project 7 28443711 28444759 + MGP_AJ_P0082938 Polr2i protein_coding protein_coding MGP_AJ_T0082939.1 MGP_AJ_G0031984.1 mouse_genomes_project 7 28443715 28444689 + Polr2i protein_coding retained_intron MGP_AJ_T0082940.1 MGP_AJ_G0031984.1 mouse_genomes_project 7 28443968 28444751 + Polr2i protein_coding processed_transcript MGP_AJ_T0082941.1 MGP_AJ_G0031984.1 mouse_genomes_project 7 28444297 28444746 + Polr2i protein_coding retained_intron MGP_AJ_T0002208.1 MGP_AJ_G0002120.1 mouse_genomes_project 7 35208233 35212218 + TEC TEC MGP_AJ_T0084658.1 MGP_AJ_G0032382.1 mouse_genomes_project 7 80227989 80268272 + MGP_AJ_P0084658 Sema4b protein_coding protein_coding MGP_AJ_T0084659.1 MGP_AJ_G0032382.1 mouse_genomes_project 7 80228026 80263713 + Sema4b protein_coding retained_intron MGP_AJ_T0084660.1 MGP_AJ_G0032382.1 mouse_genomes_project 7 80240329 80268156 + MGP_AJ_P0084660 Sema4b protein_coding protein_coding MGP_AJ_T0084661.1 MGP_AJ_G0032382.1 mouse_genomes_project 7 80240424 80255938 + Sema4b protein_coding retained_intron MGP_AJ_T0087442.1 MGP_AJ_G0033141.1 mouse_genomes_project 7 140986203 140990418 + MGP_AJ_P0087442 Zfp511 protein_coding protein_coding MGP_AJ_T0082918.1 MGP_AJ_G0031978.1 mouse_genomes_project 7 28331043 28343513 + MGP_AJ_P0082918 Zfp382 protein_coding protein_coding MGP_AJ_T0082919.1 MGP_AJ_G0031978.1 mouse_genomes_project 7 28331071 28339664 + MGP_AJ_P0082919 Zfp382 protein_coding protein_coding MGP_AJ_T0082920.1 MGP_AJ_G0031978.1 mouse_genomes_project 7 28334439 28342393 + Zfp382 protein_coding retained_intron MGP_AJ_T0081400.1 MGP_AJ_G0031519.1 mouse_genomes_project 7 1379869 1389135 + MGP_AJ_P0081400 Eps8l1 protein_coding nonsense_mediated_decay MGP_AJ_T0081401.1 MGP_AJ_G0031519.1 mouse_genomes_project 7 1379869 1388392 + MGP_AJ_P0081401 Eps8l1 protein_coding protein_coding MGP_AJ_T0081402.1 MGP_AJ_G0031519.1 mouse_genomes_project 7 1379878 1398516 + MGP_AJ_P0081402 Eps8l1 protein_coding protein_coding MGP_AJ_T0081403.1 MGP_AJ_G0031519.1 mouse_genomes_project 7 1383657 1389999 + MGP_AJ_P0081403 Eps8l1 protein_coding protein_coding MGP_AJ_T0081404.1 MGP_AJ_G0031519.1 mouse_genomes_project 7 1383899 1388534 + Eps8l1 protein_coding retained_intron MGP_AJ_T0081405.1 MGP_AJ_G0031519.1 mouse_genomes_project 7 1383906 1389344 + Eps8l1 protein_coding retained_intron MGP_AJ_T0081406.1 MGP_AJ_G0031519.1 mouse_genomes_project 7 1383906 1398354 + MGP_AJ_P0081406 Eps8l1 protein_coding protein_coding MGP_AJ_T0081407.1 MGP_AJ_G0031519.1 mouse_genomes_project 7 1383933 1389207 + MGP_AJ_P0081407 Eps8l1 protein_coding protein_coding MGP_AJ_T0081408.1 MGP_AJ_G0031519.1 mouse_genomes_project 7 1384013 1399599 + MGP_AJ_P0081408 Eps8l1 protein_coding protein_coding MGP_AJ_T0081409.1 MGP_AJ_G0031519.1 mouse_genomes_project 7 1384025 1398352 + MGP_AJ_P0081409 Eps8l1 protein_coding nonsense_mediated_decay MGP_AJ_T0081410.1 MGP_AJ_G0031519.1 mouse_genomes_project 7 1384033 1389084 + MGP_AJ_P0081410 Eps8l1 protein_coding protein_coding MGP_AJ_T0081411.1 MGP_AJ_G0031519.1 mouse_genomes_project 7 1393094 1393748 + Eps8l1 protein_coding processed_transcript MGP_AJ_T0081412.1 MGP_AJ_G0031519.1 mouse_genomes_project 7 1396539 1397082 + Eps8l1 protein_coding processed_transcript MGP_AJ_T0081413.1 MGP_AJ_G0031519.1 mouse_genomes_project 7 1396777 1398356 + MGP_AJ_P0081413 Eps8l1 protein_coding nonsense_mediated_decay MGP_AJ_T0008879.1 MGP_AJ_G0007168.1 mouse_genomes_project 7 43840001 43840898 + Gm45123 lincRNA lincRNA MGP_AJ_T0085882.1 MGP_AJ_G0032824.1 mouse_genomes_project 7 109917364 110079783 - Stk33 protein_coding processed_transcript MGP_AJ_T0085883.1 MGP_AJ_G0032824.1 mouse_genomes_project 7 109917364 110079778 - MGP_AJ_P0085883 Stk33 protein_coding protein_coding MGP_AJ_T0085884.1 MGP_AJ_G0032824.1 mouse_genomes_project 7 109917364 110079519 - MGP_AJ_P0085884 Stk33 protein_coding protein_coding MGP_AJ_T0085885.1 MGP_AJ_G0032824.1 mouse_genomes_project 7 109917364 110079783 - MGP_AJ_P0085885 Stk33 protein_coding protein_coding MGP_AJ_T0085886.1 MGP_AJ_G0032824.1 mouse_genomes_project 7 109917736 110079700 - MGP_AJ_P0085886 Stk33 protein_coding protein_coding MGP_AJ_T0102783.1 MGP_AJ_G0040524.1 mouse_genomes_project 7 12213423 12213712 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0008853.1 MGP_AJ_G0007151.1 mouse_genomes_project 7 35786016 35791971 + Gm28077 lincRNA lincRNA MGP_AJ_T0081952.1 MGP_AJ_G0031717.1 mouse_genomes_project 7 16232955 16434820 - MGP_AJ_P0081952 Psg19 protein_coding protein_coding MGP_AJ_T0015781.1 MGP_AJ_G0013876.1 mouse_genomes_project 7 32205320 32206047 - processed_pseudogene processed_pseudogene MGP_AJ_T0082897.1 MGP_AJ_G0031972.1 mouse_genomes_project 7 28186866 28227870 + MGP_AJ_P0082897 Zfp568 protein_coding protein_coding MGP_AJ_T0082898.1 MGP_AJ_G0031972.1 mouse_genomes_project 7 28188218 28231048 + MGP_AJ_P0082898 Zfp568 protein_coding protein_coding MGP_AJ_T0082899.1 MGP_AJ_G0031972.1 mouse_genomes_project 7 28190702 28226411 + MGP_AJ_P0082899 Zfp568 protein_coding protein_coding MGP_AJ_T0082900.1 MGP_AJ_G0031972.1 mouse_genomes_project 7 28190702 28226411 + MGP_AJ_P0082900 Zfp568 protein_coding protein_coding MGP_AJ_T0010860.1 MGP_AJ_G0008982.1 mouse_genomes_project 7 43825714 43825779 + Mir7052 miRNA miRNA MGP_AJ_T0102777.1 MGP_AJ_G0040518.1 mouse_genomes_project 7 11627531 11630784 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0082820.1 MGP_AJ_G0031952.1 mouse_genomes_project 7 27334659 27338365 + MGP_AJ_P0082820 Ggn protein_coding protein_coding MGP_AJ_T0082821.1 MGP_AJ_G0031952.1 mouse_genomes_project 7 27334829 27338344 + MGP_AJ_P0082821 Ggn protein_coding protein_coding MGP_AJ_T0083802.1 MGP_AJ_G0032183.1 mouse_genomes_project 7 44529522 44535182 + MGP_AJ_P0083802 Pih1d1 protein_coding protein_coding MGP_AJ_T0083803.1 MGP_AJ_G0032183.1 mouse_genomes_project 7 44531058 44535182 + MGP_AJ_P0083803 Pih1d1 protein_coding protein_coding MGP_AJ_T0083631.1 MGP_AJ_G0032142.1 mouse_genomes_project 7 43823347 43827020 + MGP_AJ_P0083631 Josd2 protein_coding protein_coding MGP_AJ_T0083632.1 MGP_AJ_G0032142.1 mouse_genomes_project 7 43823373 43825546 + Josd2 protein_coding retained_intron MGP_AJ_T0083633.1 MGP_AJ_G0032142.1 mouse_genomes_project 7 43823389 43827017 + MGP_AJ_P0083633 Josd2 protein_coding protein_coding MGP_AJ_T0083634.1 MGP_AJ_G0032142.1 mouse_genomes_project 7 43823390 43827019 + MGP_AJ_P0083634 Josd2 protein_coding protein_coding MGP_AJ_T0083635.1 MGP_AJ_G0032142.1 mouse_genomes_project 7 43823403 43826904 + MGP_AJ_P0083635 Josd2 protein_coding protein_coding MGP_AJ_T0083636.1 MGP_AJ_G0032142.1 mouse_genomes_project 7 43823406 43827030 + MGP_AJ_P0083636 Josd2 protein_coding protein_coding MGP_AJ_T0083637.1 MGP_AJ_G0032142.1 mouse_genomes_project 7 43823410 43824680 + Josd2 protein_coding retained_intron MGP_AJ_T0083638.1 MGP_AJ_G0032142.1 mouse_genomes_project 7 43823412 43827016 + MGP_AJ_P0083638 Josd2 protein_coding protein_coding MGP_AJ_T0083639.1 MGP_AJ_G0032142.1 mouse_genomes_project 7 43823417 43824802 + Josd2 protein_coding retained_intron MGP_AJ_T0083640.1 MGP_AJ_G0032142.1 mouse_genomes_project 7 43823439 43826989 + MGP_AJ_P0083640 Josd2 protein_coding protein_coding MGP_AJ_T0083641.1 MGP_AJ_G0032142.1 mouse_genomes_project 7 43823443 43824717 + Josd2 protein_coding retained_intron MGP_AJ_T0083642.1 MGP_AJ_G0032142.1 mouse_genomes_project 7 43823452 43826544 + MGP_AJ_P0083642 Josd2 protein_coding nonsense_mediated_decay MGP_AJ_T0083643.1 MGP_AJ_G0032142.1 mouse_genomes_project 7 43823456 43825216 + Josd2 protein_coding processed_transcript MGP_AJ_T0083644.1 MGP_AJ_G0032142.1 mouse_genomes_project 7 43823456 43827019 + MGP_AJ_P0083644 Josd2 protein_coding nonsense_mediated_decay MGP_AJ_T0083645.1 MGP_AJ_G0032142.1 mouse_genomes_project 7 43823461 43827011 + MGP_AJ_P0083645 Josd2 protein_coding protein_coding MGP_AJ_T0083646.1 MGP_AJ_G0032142.1 mouse_genomes_project 7 43823518 43827020 + Josd2 protein_coding retained_intron MGP_AJ_T0083647.1 MGP_AJ_G0032142.1 mouse_genomes_project 7 43823549 43824338 + Josd2 protein_coding retained_intron MGP_AJ_T0083648.1 MGP_AJ_G0032142.1 mouse_genomes_project 7 43824193 43826971 + Josd2 protein_coding processed_transcript MGP_AJ_T0015738.1 MGP_AJ_G0013833.1 mouse_genomes_project 7 21933075 21939706 + processed_pseudogene processed_pseudogene MGP_AJ_T0082167.1 MGP_AJ_G0031778.1 mouse_genomes_project 7 17596843 17612076 - MGP_AJ_P0082167 Igsf23 protein_coding protein_coding MGP_AJ_T0009025.1 MGP_AJ_G0007266.1 mouse_genomes_project 7 127164760 127167985 - Gm45142 lincRNA lincRNA MGP_AJ_T0009026.1 MGP_AJ_G0007266.1 mouse_genomes_project 7 127167010 127168007 - Gm45142 lincRNA lincRNA MGP_AJ_T0084927.1 MGP_AJ_G0032438.1 mouse_genomes_project 7 84943941 84949168 + MGP_AJ_P0084927 protein_coding protein_coding MGP_AJ_T0083477.1 MGP_AJ_G0032096.1 mouse_genomes_project 7 41422278 41424924 - MGP_AJ_P0083477 1700123K08Rik protein_coding protein_coding MGP_AJ_T0015705.1 MGP_AJ_G0013800.1 mouse_genomes_project 7 9773043 9774007 + processed_pseudogene processed_pseudogene MGP_AJ_T0086761.1 MGP_AJ_G0032997.1 mouse_genomes_project 7 127842629 127844949 - MGP_AJ_P0086761 protein_coding protein_coding MGP_AJ_T0086764.1 MGP_AJ_G0032997.1 mouse_genomes_project 7 127842771 127844917 - MGP_AJ_P0086764 protein_coding protein_coding MGP_AJ_T0086765.1 MGP_AJ_G0032997.1 mouse_genomes_project 7 127842973 127844277 - MGP_AJ_P0086765 protein_coding protein_coding MGP_AJ_T0086766.1 MGP_AJ_G0032997.1 mouse_genomes_project 7 127843002 127844914 - MGP_AJ_P0086766 protein_coding protein_coding MGP_AJ_T0085836.1 MGP_AJ_G0032788.1 mouse_genomes_project 7 108629107 108630052 - MGP_AJ_P0085836 Olfr478 protein_coding protein_coding MGP_AJ_T0084813.1 MGP_AJ_G0032405.1 mouse_genomes_project 7 81294280 81421826 + MGP_AJ_P0084813 Pde8a protein_coding protein_coding MGP_AJ_T0084814.1 MGP_AJ_G0032405.1 mouse_genomes_project 7 81381299 81401407 + Pde8a protein_coding processed_transcript MGP_AJ_T0084815.1 MGP_AJ_G0032405.1 mouse_genomes_project 7 81392285 81406736 + Pde8a protein_coding processed_transcript MGP_AJ_T0082508.1 MGP_AJ_G0031877.1 mouse_genomes_project 7 25174943 25191687 - MGP_AJ_P0082508 Rab4b protein_coding protein_coding MGP_AJ_T0082509.1 MGP_AJ_G0031877.1 mouse_genomes_project 7 25174945 25191601 - MGP_AJ_P0082509 Rab4b protein_coding nonsense_mediated_decay MGP_AJ_T0082510.1 MGP_AJ_G0031877.1 mouse_genomes_project 7 25174946 25191606 - Rab4b protein_coding retained_intron MGP_AJ_T0082512.1 MGP_AJ_G0031877.1 mouse_genomes_project 7 25175214 25191679 - Rab4b protein_coding processed_transcript MGP_AJ_T0082513.1 MGP_AJ_G0031877.1 mouse_genomes_project 7 25184298 25186412 - Rab4b protein_coding retained_intron MGP_AJ_T0082514.1 MGP_AJ_G0031877.1 mouse_genomes_project 7 25184609 25186359 - Rab4b protein_coding processed_transcript MGP_AJ_T0082515.1 MGP_AJ_G0031877.1 mouse_genomes_project 7 25187696 25191667 - Rab4b protein_coding processed_transcript MGP_AJ_T0082516.1 MGP_AJ_G0031877.1 mouse_genomes_project 7 25187727 25191614 - Rab4b protein_coding processed_transcript MGP_AJ_T0084671.1 MGP_AJ_G0032385.1 mouse_genomes_project 7 80290364 80305277 + MGP_AJ_P0084671 Ttll13 protein_coding protein_coding MGP_AJ_T0084672.1 MGP_AJ_G0032385.1 mouse_genomes_project 7 80290413 80290793 + Ttll13 protein_coding retained_intron MGP_AJ_T0084673.1 MGP_AJ_G0032385.1 mouse_genomes_project 7 80290543 80303652 + Ttll13 protein_coding retained_intron MGP_AJ_T0084674.1 MGP_AJ_G0032385.1 mouse_genomes_project 7 80290983 80297362 + Ttll13 protein_coding retained_intron MGP_AJ_T0084675.1 MGP_AJ_G0032385.1 mouse_genomes_project 7 80291377 80305126 + MGP_AJ_P0084675 Ttll13 protein_coding protein_coding MGP_AJ_T0008844.1 MGP_AJ_G0007142.1 mouse_genomes_project 7 33538686 33542669 + Gm45097 lincRNA lincRNA MGP_AJ_T0081524.1 MGP_AJ_G0031544.1 mouse_genomes_project 7 1886153 1905088 + MGP_AJ_P0081524 Ssc5d protein_coding protein_coding MGP_AJ_T0085051.1 MGP_AJ_G0032489.1 mouse_genomes_project 7 93036677 93053360 - MGP_AJ_P0085051 Ddias protein_coding protein_coding MGP_AJ_T0086136.1 MGP_AJ_G0032874.1 mouse_genomes_project 7 117058419 117163898 - MGP_AJ_P0086136 Pik3c2a protein_coding protein_coding MGP_AJ_T0086137.1 MGP_AJ_G0032874.1 mouse_genomes_project 7 117058430 117061959 - Pik3c2a protein_coding retained_intron MGP_AJ_T0086138.1 MGP_AJ_G0032874.1 mouse_genomes_project 7 117060759 117094178 - MGP_AJ_P0086138 Pik3c2a protein_coding nonsense_mediated_decay MGP_AJ_T0086139.1 MGP_AJ_G0032874.1 mouse_genomes_project 7 117060881 117163898 - MGP_AJ_P0086139 Pik3c2a protein_coding protein_coding MGP_AJ_T0086140.1 MGP_AJ_G0032874.1 mouse_genomes_project 7 117063235 117063976 - Pik3c2a protein_coding retained_intron MGP_AJ_T0086141.1 MGP_AJ_G0032874.1 mouse_genomes_project 7 117113005 117163896 - MGP_AJ_P0086141 Pik3c2a protein_coding nonsense_mediated_decay MGP_AJ_T0086142.1 MGP_AJ_G0032874.1 mouse_genomes_project 7 117114000 117163888 - Pik3c2a protein_coding retained_intron MGP_AJ_T0085561.1 MGP_AJ_G0032639.1 mouse_genomes_project 7 103928710 103929682 - MGP_AJ_P0085561 Olfr612 protein_coding protein_coding MGP_AJ_T0081546.1 MGP_AJ_G0031555.1 mouse_genomes_project 7 2019131 2023469 + MGP_AJ_P0081546 protein_coding protein_coding MGP_AJ_T0082655.1 MGP_AJ_G0031912.1 mouse_genomes_project 7 26296051 26303877 + MGP_AJ_P0082655 Dyrk1b protein_coding protein_coding MGP_AJ_T0082656.1 MGP_AJ_G0031912.1 mouse_genomes_project 7 26296076 26303506 + MGP_AJ_P0082656 Dyrk1b protein_coding protein_coding MGP_AJ_T0082657.1 MGP_AJ_G0031912.1 mouse_genomes_project 7 26296848 26303877 + MGP_AJ_P0082657 Dyrk1b protein_coding protein_coding MGP_AJ_T0082658.1 MGP_AJ_G0031912.1 mouse_genomes_project 7 26296898 26303526 + MGP_AJ_P0082658 Dyrk1b protein_coding protein_coding MGP_AJ_T0101418.1 MGP_AJ_G0039384.1 mouse_genomes_project 7 59293155 59293234 - snoRNA snoRNA MGP_AJ_T0086223.1 MGP_AJ_G0032895.1 mouse_genomes_project 7 120250498 120268340 + MGP_AJ_P0086223 Acsm5 protein_coding protein_coding MGP_AJ_T0085807.1 MGP_AJ_G0032766.1 mouse_genomes_project 7 107600174 107604268 - MGP_AJ_P0085807 Olfr711 protein_coding protein_coding MGP_AJ_T0087959.1 MGP_AJ_G0033267.1 mouse_genomes_project 7 144819902 144844445 + MGP_AJ_P0087959 Dhcr7 protein_coding protein_coding MGP_AJ_T0087960.1 MGP_AJ_G0033267.1 mouse_genomes_project 7 144826104 144844440 + MGP_AJ_P0087960 Dhcr7 protein_coding protein_coding MGP_AJ_T0087961.1 MGP_AJ_G0033267.1 mouse_genomes_project 7 144826261 144841595 + MGP_AJ_P0087961 Dhcr7 protein_coding protein_coding MGP_AJ_T0087962.1 MGP_AJ_G0033267.1 mouse_genomes_project 7 144826265 144839172 + MGP_AJ_P0087962 Dhcr7 protein_coding protein_coding MGP_AJ_T0087963.1 MGP_AJ_G0033267.1 mouse_genomes_project 7 144826285 144833916 + Dhcr7 protein_coding processed_transcript MGP_AJ_T0087964.1 MGP_AJ_G0033267.1 mouse_genomes_project 7 144836954 144839325 + Dhcr7 protein_coding processed_transcript MGP_AJ_T0087965.1 MGP_AJ_G0033267.1 mouse_genomes_project 7 144837359 144843435 + Dhcr7 protein_coding processed_transcript MGP_AJ_T0100135.1 MGP_AJ_G0038101.1 mouse_genomes_project 7 14097710 14097813 - Gm24708 snRNA snRNA MGP_AJ_T0081357.1 MGP_AJ_G0031511.1 mouse_genomes_project 7 1020795 1026957 + Ttyh1 protein_coding processed_transcript MGP_AJ_T0081358.1 MGP_AJ_G0031511.1 mouse_genomes_project 7 1020917 1036318 + Ttyh1 protein_coding retained_intron MGP_AJ_T0081359.1 MGP_AJ_G0031511.1 mouse_genomes_project 7 1020917 1036716 + MGP_AJ_P0081359 Ttyh1 protein_coding protein_coding MGP_AJ_T0081360.1 MGP_AJ_G0031511.1 mouse_genomes_project 7 1020920 1039031 + MGP_AJ_P0081360 Ttyh1 protein_coding protein_coding MGP_AJ_T0081361.1 MGP_AJ_G0031511.1 mouse_genomes_project 7 1020943 1026988 + Ttyh1 protein_coding processed_transcript MGP_AJ_T0081362.1 MGP_AJ_G0031511.1 mouse_genomes_project 7 1020972 1036702 + MGP_AJ_P0081362 Ttyh1 protein_coding protein_coding MGP_AJ_T0081363.1 MGP_AJ_G0031511.1 mouse_genomes_project 7 1020975 1026997 + MGP_AJ_P0081363 Ttyh1 protein_coding nonsense_mediated_decay MGP_AJ_T0081364.1 MGP_AJ_G0031511.1 mouse_genomes_project 7 1021009 1029634 + MGP_AJ_P0081364 Ttyh1 protein_coding nonsense_mediated_decay MGP_AJ_T0081365.1 MGP_AJ_G0031511.1 mouse_genomes_project 7 1021141 1036699 + MGP_AJ_P0081365 Ttyh1 protein_coding nonsense_mediated_decay MGP_AJ_T0081366.1 MGP_AJ_G0031511.1 mouse_genomes_project 7 1021607 1026929 + Ttyh1 protein_coding processed_transcript MGP_AJ_T0081367.1 MGP_AJ_G0031511.1 mouse_genomes_project 7 1023527 1036776 + Ttyh1 protein_coding retained_intron MGP_AJ_T0081368.1 MGP_AJ_G0031511.1 mouse_genomes_project 7 1025857 1035608 + MGP_AJ_P0081368 Ttyh1 protein_coding protein_coding MGP_AJ_T0081369.1 MGP_AJ_G0031511.1 mouse_genomes_project 7 1027035 1034788 + Ttyh1 protein_coding processed_transcript MGP_AJ_T0081370.1 MGP_AJ_G0031511.1 mouse_genomes_project 7 1029594 1031488 + Ttyh1 protein_coding retained_intron MGP_AJ_T0081371.1 MGP_AJ_G0031511.1 mouse_genomes_project 7 1030614 1034566 + Ttyh1 protein_coding retained_intron MGP_AJ_T0081372.1 MGP_AJ_G0031511.1 mouse_genomes_project 7 1031987 1033259 + Ttyh1 protein_coding retained_intron MGP_AJ_T0081373.1 MGP_AJ_G0031511.1 mouse_genomes_project 7 1032505 1033403 + Ttyh1 protein_coding retained_intron MGP_AJ_T0081374.1 MGP_AJ_G0031511.1 mouse_genomes_project 7 1034398 1035341 + Ttyh1 protein_coding retained_intron MGP_AJ_T0081662.1 MGP_AJ_G0031620.1 mouse_genomes_project 7 9768154 9793189 + MGP_AJ_P0081662 2900092C05Rik protein_coding protein_coding MGP_AJ_T0083473.1 MGP_AJ_G0032093.1 mouse_genomes_project 7 40976955 41025304 - MGP_AJ_P0083473 protein_coding protein_coding MGP_AJ_T0086173.1 MGP_AJ_G0032881.1 mouse_genomes_project 7 119225270 119232122 - MGP_AJ_P0086173 Itpripl2 protein_coding protein_coding MGP_AJ_T0008837.1 MGP_AJ_G0007136.1 mouse_genomes_project 7 32667130 32670824 - Gm12762 lincRNA lincRNA MGP_AJ_T0086035.1 MGP_AJ_G0032857.1 mouse_genomes_project 7 114006130 114059764 - MGP_AJ_P0086035 Btbd10 protein_coding protein_coding MGP_AJ_T0086036.1 MGP_AJ_G0032857.1 mouse_genomes_project 7 114006141 114037696 - MGP_AJ_P0086036 Btbd10 protein_coding protein_coding MGP_AJ_T0086037.1 MGP_AJ_G0032857.1 mouse_genomes_project 7 114006150 114042438 - MGP_AJ_P0086037 Btbd10 protein_coding nonsense_mediated_decay MGP_AJ_T0086038.1 MGP_AJ_G0032857.1 mouse_genomes_project 7 114017811 114021856 - Btbd10 protein_coding retained_intron MGP_AJ_T0086039.1 MGP_AJ_G0032857.1 mouse_genomes_project 7 114059041 114059761 - Btbd10 protein_coding processed_transcript MGP_AJ_T0015855.1 MGP_AJ_G0013950.1 mouse_genomes_project 7 73565318 73566646 - processed_pseudogene processed_pseudogene MGP_AJ_T0102812.1 MGP_AJ_G0040552.1 mouse_genomes_project 7 32358056 32359034 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0084863.1 MGP_AJ_G0032420.1 mouse_genomes_project 7 82269514 82373447 + MGP_AJ_P0084863 Sh3gl3 protein_coding protein_coding MGP_AJ_T0084864.1 MGP_AJ_G0032420.1 mouse_genomes_project 7 82270161 82358363 + Sh3gl3 protein_coding retained_intron MGP_AJ_T0084865.1 MGP_AJ_G0032420.1 mouse_genomes_project 7 82270175 82399146 + MGP_AJ_P0084865 Sh3gl3 protein_coding nonsense_mediated_decay MGP_AJ_T0084866.1 MGP_AJ_G0032420.1 mouse_genomes_project 7 82270269 82399146 + MGP_AJ_P0084866 Sh3gl3 protein_coding nonsense_mediated_decay MGP_AJ_T0084867.1 MGP_AJ_G0032420.1 mouse_genomes_project 7 82270294 82399145 + MGP_AJ_P0084867 Sh3gl3 protein_coding protein_coding MGP_AJ_T0084868.1 MGP_AJ_G0032420.1 mouse_genomes_project 7 82270475 82373510 + MGP_AJ_P0084868 Sh3gl3 protein_coding protein_coding MGP_AJ_T0084869.1 MGP_AJ_G0032420.1 mouse_genomes_project 7 82270553 82271623 + Sh3gl3 protein_coding processed_transcript MGP_AJ_T0084870.1 MGP_AJ_G0032420.1 mouse_genomes_project 7 82359210 82398956 + MGP_AJ_P0084870 Sh3gl3 protein_coding protein_coding MGP_AJ_T0083231.1 MGP_AJ_G0032040.1 mouse_genomes_project 7 29380007 29400861 - Gramd1a protein_coding retained_intron MGP_AJ_T0083232.1 MGP_AJ_G0032040.1 mouse_genomes_project 7 29380007 29400863 - MGP_AJ_P0083232 Gramd1a protein_coding protein_coding MGP_AJ_T0083233.1 MGP_AJ_G0032040.1 mouse_genomes_project 7 29380007 29400931 - MGP_AJ_P0083233 Gramd1a protein_coding protein_coding MGP_AJ_T0083234.1 MGP_AJ_G0032040.1 mouse_genomes_project 7 29380007 29400861 - MGP_AJ_P0083234 Gramd1a protein_coding nonsense_mediated_decay MGP_AJ_T0083235.1 MGP_AJ_G0032040.1 mouse_genomes_project 7 29380007 29400882 - MGP_AJ_P0083235 Gramd1a protein_coding nonsense_mediated_decay MGP_AJ_T0083236.1 MGP_AJ_G0032040.1 mouse_genomes_project 7 29382177 29383183 - Gramd1a protein_coding retained_intron MGP_AJ_T0083237.1 MGP_AJ_G0032040.1 mouse_genomes_project 7 29382409 29388000 - MGP_AJ_P0083237 Gramd1a protein_coding protein_coding MGP_AJ_T0083238.1 MGP_AJ_G0032040.1 mouse_genomes_project 7 29382657 29393590 - MGP_AJ_P0083238 Gramd1a protein_coding nonsense_mediated_decay MGP_AJ_T0083239.1 MGP_AJ_G0032040.1 mouse_genomes_project 7 29385409 29389740 - MGP_AJ_P0083239 Gramd1a protein_coding nonsense_mediated_decay MGP_AJ_T0083240.1 MGP_AJ_G0032040.1 mouse_genomes_project 7 29389689 29400861 - MGP_AJ_P0083240 Gramd1a protein_coding nonsense_mediated_decay MGP_AJ_T0083241.1 MGP_AJ_G0032040.1 mouse_genomes_project 7 29390885 29400802 - Gramd1a protein_coding retained_intron MGP_AJ_T0083242.1 MGP_AJ_G0032040.1 mouse_genomes_project 7 29390993 29401918 - MGP_AJ_P0083242 Gramd1a protein_coding protein_coding MGP_AJ_T0083243.1 MGP_AJ_G0032040.1 mouse_genomes_project 7 29392414 29405750 - MGP_AJ_P0083243 Gramd1a protein_coding protein_coding MGP_AJ_T0085649.1 MGP_AJ_G0032697.1 mouse_genomes_project 7 104903853 104904780 - MGP_AJ_P0085649 Olfr655 protein_coding protein_coding MGP_AJ_T0100176.1 MGP_AJ_G0038142.1 mouse_genomes_project 7 112626059 112626209 - Gm23345 snRNA snRNA MGP_AJ_T0085206.1 MGP_AJ_G0032523.1 mouse_genomes_project 7 99630101 99714644 + MGP_AJ_P0085206 Gdpd5 protein_coding protein_coding MGP_AJ_T0085207.1 MGP_AJ_G0032523.1 mouse_genomes_project 7 99630263 99714654 + MGP_AJ_P0085207 Gdpd5 protein_coding unknown_likely_coding MGP_AJ_T0085824.1 MGP_AJ_G0032778.1 mouse_genomes_project 7 108171341 108330876 + MGP_AJ_P0085824 Ppfibp2 protein_coding protein_coding MGP_AJ_T0085825.1 MGP_AJ_G0032778.1 mouse_genomes_project 7 108183161 108334564 + MGP_AJ_P0085825 Ppfibp2 protein_coding protein_coding MGP_AJ_T0011694.1 MGP_AJ_G0009816.1 mouse_genomes_project 7 115647235 115647553 + Gm22669 misc_RNA misc_RNA MGP_AJ_T0083462.1 MGP_AJ_G0032091.1 mouse_genomes_project 7 40409566 40422249 + protein_coding processed_transcript MGP_AJ_T0083463.1 MGP_AJ_G0032091.1 mouse_genomes_project 7 40409621 40413795 + protein_coding processed_transcript MGP_AJ_T0083464.1 MGP_AJ_G0032091.1 mouse_genomes_project 7 40409660 40423526 + MGP_AJ_P0083464 protein_coding protein_coding MGP_AJ_T0083465.1 MGP_AJ_G0032091.1 mouse_genomes_project 7 40422313 40423549 + protein_coding retained_intron MGP_AJ_T0010914.1 MGP_AJ_G0009036.1 mouse_genomes_project 7 115883005 115883085 + Gm27684 miRNA miRNA MGP_AJ_T0086353.1 MGP_AJ_G0032932.1 mouse_genomes_project 7 122864814 122879829 + MGP_AJ_P0086353 Ubfd1 protein_coding protein_coding MGP_AJ_T0086354.1 MGP_AJ_G0032932.1 mouse_genomes_project 7 122864847 122875268 + Ubfd1 protein_coding retained_intron MGP_AJ_T0086355.1 MGP_AJ_G0032932.1 mouse_genomes_project 7 122865079 122869043 + Ubfd1 protein_coding retained_intron MGP_AJ_T0086356.1 MGP_AJ_G0032932.1 mouse_genomes_project 7 122865086 122866619 + Ubfd1 protein_coding processed_transcript MGP_AJ_T0086357.1 MGP_AJ_G0032932.1 mouse_genomes_project 7 122866538 122876247 + MGP_AJ_P0086357 Ubfd1 protein_coding nonsense_mediated_decay MGP_AJ_T0009018.1 MGP_AJ_G0007262.1 mouse_genomes_project 7 126105375 126153812 - 4933440M02Rik lincRNA lincRNA MGP_AJ_T0009019.1 MGP_AJ_G0007262.1 mouse_genomes_project 7 126145220 126165146 - 4933440M02Rik lincRNA lincRNA MGP_AJ_T0009020.1 MGP_AJ_G0007262.1 mouse_genomes_project 7 126147358 126165162 - 4933440M02Rik lincRNA lincRNA MGP_AJ_T0084270.1 MGP_AJ_G0032304.1 mouse_genomes_project 7 59707326 59717634 - MGP_AJ_P0084270 Snurf protein_coding protein_coding MGP_AJ_T0009051.1 MGP_AJ_G0007283.1 mouse_genomes_project 7 131372887 131376149 + lincRNA lincRNA MGP_AJ_T0100151.1 MGP_AJ_G0038117.1 mouse_genomes_project 7 55199263 55199370 - Gm24116 snRNA snRNA MGP_AJ_T0084281.1 MGP_AJ_G0032311.1 mouse_genomes_project 7 63758649 63813652 - MGP_AJ_P0084281 Klf13 protein_coding protein_coding MGP_AJ_T0084282.1 MGP_AJ_G0032311.1 mouse_genomes_project 7 63764347 63811038 - MGP_AJ_P0084282 Klf13 protein_coding protein_coding MGP_AJ_T0084283.1 MGP_AJ_G0032311.1 mouse_genomes_project 7 63764364 63799411 - MGP_AJ_P0084283 Klf13 protein_coding protein_coding MGP_AJ_T0084285.1 MGP_AJ_G0032311.1 mouse_genomes_project 7 63810135 63811069 - Klf13 protein_coding retained_intron MGP_AJ_T0015730.1 MGP_AJ_G0013825.1 mouse_genomes_project 7 15126710 15127238 + processed_pseudogene processed_pseudogene MGP_AJ_T0083159.1 MGP_AJ_G0032029.1 mouse_genomes_project 7 29166301 29167966 - MGP_AJ_P0083159 Hamp protein_coding protein_coding MGP_AJ_T0084830.1 MGP_AJ_G0032408.1 mouse_genomes_project 7 81544725 81549622 - Ap3b2 protein_coding retained_intron MGP_AJ_T0084831.1 MGP_AJ_G0032408.1 mouse_genomes_project 7 81544727 81578683 - MGP_AJ_P0084831 Ap3b2 protein_coding protein_coding MGP_AJ_T0084832.1 MGP_AJ_G0032408.1 mouse_genomes_project 7 81558712 81578464 - Ap3b2 protein_coding retained_intron MGP_AJ_T0084833.1 MGP_AJ_G0032408.1 mouse_genomes_project 7 81561442 81562730 - Ap3b2 protein_coding processed_transcript MGP_AJ_T0084834.1 MGP_AJ_G0032408.1 mouse_genomes_project 7 81563971 81578541 - MGP_AJ_P0084834 Ap3b2 protein_coding protein_coding MGP_AJ_T0081512.1 MGP_AJ_G0031538.1 mouse_genomes_project 7 1748065 1752987 - Ube2s protein_coding retained_intron MGP_AJ_T0081513.1 MGP_AJ_G0031538.1 mouse_genomes_project 7 1749054 1754458 - MGP_AJ_P0081513 Ube2s protein_coding protein_coding MGP_AJ_T0081514.1 MGP_AJ_G0031538.1 mouse_genomes_project 7 1752312 1753774 - MGP_AJ_P0081514 Ube2s protein_coding protein_coding MGP_AJ_T0009060.1 MGP_AJ_G0007289.1 mouse_genomes_project 7 136133498 136137473 - 1700120G07Rik lincRNA lincRNA MGP_AJ_T0009061.1 MGP_AJ_G0007289.1 mouse_genomes_project 7 136134635 136137473 - 1700120G07Rik lincRNA lincRNA MGP_AJ_T0102759.1 MGP_AJ_G0040500.1 mouse_genomes_project 7 9217627 9218872 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0087485.1 MGP_AJ_G0033156.1 mouse_genomes_project 7 141280451 141281429 + MGP_AJ_P0087485 Olfr527 protein_coding protein_coding MGP_AJ_T0015954.1 MGP_AJ_G0014049.1 mouse_genomes_project 7 143295214 143295667 - processed_pseudogene processed_pseudogene MGP_AJ_T0081557.1 MGP_AJ_G0031559.1 mouse_genomes_project 7 2073980 2081087 - MGP_AJ_P0081557 Rfpl4 protein_coding protein_coding MGP_AJ_T0081558.1 MGP_AJ_G0031559.1 mouse_genomes_project 7 2073980 2081087 - MGP_AJ_P0081558 Rfpl4 protein_coding protein_coding MGP_AJ_T0085095.1 MGP_AJ_G0032500.1 mouse_genomes_project 7 97692798 97756804 + MGP_AJ_P0085095 Ints4 protein_coding protein_coding MGP_AJ_T0085096.1 MGP_AJ_G0032500.1 mouse_genomes_project 7 97692845 97729338 + Ints4 protein_coding retained_intron MGP_AJ_T0085097.1 MGP_AJ_G0032500.1 mouse_genomes_project 7 97692855 97707587 + Ints4 protein_coding retained_intron MGP_AJ_T0085098.1 MGP_AJ_G0032500.1 mouse_genomes_project 7 97715435 97722970 + MGP_AJ_P0085098 Ints4 protein_coding nonsense_mediated_decay MGP_AJ_T0085099.1 MGP_AJ_G0032500.1 mouse_genomes_project 7 97745075 97750658 + Ints4 protein_coding retained_intron MGP_AJ_T0085100.1 MGP_AJ_G0032500.1 mouse_genomes_project 7 97750492 97756672 + Ints4 protein_coding retained_intron MGP_AJ_T0085101.1 MGP_AJ_G0032500.1 mouse_genomes_project 7 97750724 97756805 + Ints4 protein_coding retained_intron MGP_AJ_T0086233.1 MGP_AJ_G0032897.1 mouse_genomes_project 7 120332420 120362945 + MGP_AJ_P0086233 Acsm1 protein_coding protein_coding MGP_AJ_T0086234.1 MGP_AJ_G0032897.1 mouse_genomes_project 7 120343247 120389776 + MGP_AJ_P0086234 Acsm1 protein_coding protein_coding MGP_AJ_T0086235.1 MGP_AJ_G0032897.1 mouse_genomes_project 7 120343279 120389496 + MGP_AJ_P0086235 Acsm1 protein_coding protein_coding MGP_AJ_T0102910.1 MGP_AJ_G0040650.1 mouse_genomes_project 7 106248442 107015884 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0085527.1 MGP_AJ_G0032608.1 mouse_genomes_project 7 103248201 103249246 + MGP_AJ_P0085527 Olfr570 protein_coding protein_coding MGP_AJ_T0002289.1 MGP_AJ_G0002200.1 mouse_genomes_project 7 117135706 117136663 - TEC TEC MGP_AJ_T0085681.1 MGP_AJ_G0032729.1 mouse_genomes_project 7 105778300 105807115 - MGP_AJ_P0085681 Fam160a2 protein_coding protein_coding MGP_AJ_T0085682.1 MGP_AJ_G0032729.1 mouse_genomes_project 7 105778300 105807137 - MGP_AJ_P0085682 Fam160a2 protein_coding protein_coding MGP_AJ_T0085684.1 MGP_AJ_G0032729.1 mouse_genomes_project 7 105785696 105807137 - MGP_AJ_P0085684 Fam160a2 protein_coding protein_coding MGP_AJ_T0085685.1 MGP_AJ_G0032729.1 mouse_genomes_project 7 105785696 105807068 - MGP_AJ_P0085685 Fam160a2 protein_coding nonsense_mediated_decay MGP_AJ_T0085686.1 MGP_AJ_G0032729.1 mouse_genomes_project 7 105785697 105807091 - MGP_AJ_P0085686 Fam160a2 protein_coding protein_coding MGP_AJ_T0085687.1 MGP_AJ_G0032729.1 mouse_genomes_project 7 105785697 105807094 - MGP_AJ_P0085687 Fam160a2 protein_coding protein_coding MGP_AJ_T0085688.1 MGP_AJ_G0032729.1 mouse_genomes_project 7 105786162 105789068 - Fam160a2 protein_coding retained_intron MGP_AJ_T0085689.1 MGP_AJ_G0032729.1 mouse_genomes_project 7 105792474 105796198 - Fam160a2 protein_coding retained_intron MGP_AJ_T0015744.1 MGP_AJ_G0013839.1 mouse_genomes_project 7 22698824 22699350 + processed_pseudogene processed_pseudogene MGP_AJ_T0101455.1 MGP_AJ_G0039421.1 mouse_genomes_project 7 136073292 136073425 - Gm24581 snoRNA snoRNA MGP_AJ_T0082903.1 MGP_AJ_G0031975.1 mouse_genomes_project 7 28259112 28297153 - MGP_AJ_P0082903 Gm26920 protein_coding nonsense_mediated_decay MGP_AJ_T0087950.1 MGP_AJ_G0033265.1 mouse_genomes_project 7 144775483 144781547 - MGP_AJ_P0087950 Mrgpre protein_coding protein_coding MGP_AJ_T0084888.1 MGP_AJ_G0032426.1 mouse_genomes_project 7 83622538 83629225 - MGP_AJ_P0084888 protein_coding protein_coding MGP_AJ_T0102820.1 MGP_AJ_G0040560.1 mouse_genomes_project 7 41345863 41350161 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0087936.1 MGP_AJ_G0033261.1 mouse_genomes_project 7 144621881 144664496 - MGP_AJ_P0087936 protein_coding protein_coding MGP_AJ_T0087937.1 MGP_AJ_G0033261.1 mouse_genomes_project 7 144622727 144664499 - MGP_AJ_P0087937 protein_coding protein_coding MGP_AJ_T0087938.1 MGP_AJ_G0033261.1 mouse_genomes_project 7 144632928 144664470 - protein_coding processed_transcript MGP_AJ_T0087939.1 MGP_AJ_G0033261.1 mouse_genomes_project 7 144652888 144676615 - MGP_AJ_P0087939 protein_coding protein_coding MGP_AJ_T0087940.1 MGP_AJ_G0033261.1 mouse_genomes_project 7 144653813 144676404 - MGP_AJ_P0087940 protein_coding protein_coding MGP_AJ_T0081663.1 MGP_AJ_G0031621.1 mouse_genomes_project 7 9816072 9837129 - MGP_AJ_P0081663 protein_coding protein_coding MGP_AJ_T0085227.1 MGP_AJ_G0032528.1 mouse_genomes_project 7 99916332 99970729 - MGP_AJ_P0085227 Slco2b1 protein_coding protein_coding MGP_AJ_T0085228.1 MGP_AJ_G0032528.1 mouse_genomes_project 7 99916917 99955189 - MGP_AJ_P0085228 Slco2b1 protein_coding protein_coding MGP_AJ_T0085229.1 MGP_AJ_G0032528.1 mouse_genomes_project 7 99916917 99966543 - MGP_AJ_P0085229 Slco2b1 protein_coding protein_coding MGP_AJ_T0085230.1 MGP_AJ_G0032528.1 mouse_genomes_project 7 99918389 99923462 - MGP_AJ_P0085230 Slco2b1 protein_coding protein_coding MGP_AJ_T0085231.1 MGP_AJ_G0032528.1 mouse_genomes_project 7 99947350 99955008 - MGP_AJ_P0085231 Slco2b1 protein_coding protein_coding MGP_AJ_T0085232.1 MGP_AJ_G0032528.1 mouse_genomes_project 7 99948951 99954962 - MGP_AJ_P0085232 Slco2b1 protein_coding protein_coding MGP_AJ_T0083914.1 MGP_AJ_G0032209.1 mouse_genomes_project 7 44945536 44957880 + MGP_AJ_P0083914 Hsd17b14 protein_coding protein_coding MGP_AJ_T0083915.1 MGP_AJ_G0032209.1 mouse_genomes_project 7 44945580 44958311 + MGP_AJ_P0083915 Hsd17b14 protein_coding protein_coding MGP_AJ_T0083916.1 MGP_AJ_G0032209.1 mouse_genomes_project 7 44946687 44957877 + Hsd17b14 protein_coding retained_intron MGP_AJ_T0083917.1 MGP_AJ_G0032209.1 mouse_genomes_project 7 44949822 44956568 + Hsd17b14 protein_coding retained_intron MGP_AJ_T0083918.1 MGP_AJ_G0032209.1 mouse_genomes_project 7 44952724 44956743 + Hsd17b14 protein_coding processed_transcript MGP_AJ_T0083919.1 MGP_AJ_G0032209.1 mouse_genomes_project 7 44952735 44957246 + Hsd17b14 protein_coding processed_transcript MGP_AJ_T0083920.1 MGP_AJ_G0032209.1 mouse_genomes_project 7 44953680 44956760 + Hsd17b14 protein_coding processed_transcript MGP_AJ_T0010935.1 MGP_AJ_G0009057.1 mouse_genomes_project 7 143650049 143650122 - Mir483 miRNA miRNA MGP_AJ_T0005291.1 MGP_AJ_G0004488.1 mouse_genomes_project 7 128411191 128425185 - Gm28198 antisense antisense MGP_AJ_T0084546.1 MGP_AJ_G0032359.1 mouse_genomes_project 7 78820440 78845403 - MGP_AJ_P0084546 protein_coding unknown_likely_coding MGP_AJ_T0084547.1 MGP_AJ_G0032359.1 mouse_genomes_project 7 78820447 78832356 - MGP_AJ_P0084547 protein_coding protein_coding MGP_AJ_T0084548.1 MGP_AJ_G0032359.1 mouse_genomes_project 7 78827464 78841421 - MGP_AJ_P0084548 protein_coding protein_coding MGP_AJ_T0087059.1 MGP_AJ_G0033060.1 mouse_genomes_project 7 129091935 129100825 + MGP_AJ_P0087059 protein_coding protein_coding MGP_AJ_T0087060.1 MGP_AJ_G0033060.1 mouse_genomes_project 7 129092080 129098841 + MGP_AJ_P0087060 protein_coding protein_coding MGP_AJ_T0087061.1 MGP_AJ_G0033060.1 mouse_genomes_project 7 129092083 129098529 + MGP_AJ_P0087061 protein_coding nonsense_mediated_decay MGP_AJ_T0087062.1 MGP_AJ_G0033060.1 mouse_genomes_project 7 129092118 129098836 + MGP_AJ_P0087062 protein_coding nonsense_mediated_decay MGP_AJ_T0087063.1 MGP_AJ_G0033060.1 mouse_genomes_project 7 129093140 129098836 + protein_coding retained_intron MGP_AJ_T0087064.1 MGP_AJ_G0033060.1 mouse_genomes_project 7 129093140 129098836 + protein_coding retained_intron MGP_AJ_T0087065.1 MGP_AJ_G0033060.1 mouse_genomes_project 7 129093140 129098836 + protein_coding retained_intron MGP_AJ_T0087066.1 MGP_AJ_G0033060.1 mouse_genomes_project 7 129093140 129098836 + protein_coding retained_intron MGP_AJ_T0087067.1 MGP_AJ_G0033060.1 mouse_genomes_project 7 129093140 129098836 + protein_coding retained_intron MGP_AJ_T0087068.1 MGP_AJ_G0033060.1 mouse_genomes_project 7 129093298 129098491 + MGP_AJ_P0087068 protein_coding nonsense_mediated_decay MGP_AJ_T0015842.1 MGP_AJ_G0013937.1 mouse_genomes_project 7 62353532 62354565 + processed_pseudogene processed_pseudogene MGP_AJ_T0102877.1 MGP_AJ_G0040617.1 mouse_genomes_project 7 85935821 85936560 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0086421.1 MGP_AJ_G0032943.1 mouse_genomes_project 7 124043086 124095828 + MGP_AJ_P0086421 Slc5a11 protein_coding protein_coding MGP_AJ_T0086422.1 MGP_AJ_G0032943.1 mouse_genomes_project 7 124043117 124059119 + Slc5a11 protein_coding processed_transcript MGP_AJ_T0086423.1 MGP_AJ_G0032943.1 mouse_genomes_project 7 124043119 124104090 + MGP_AJ_P0086423 Slc5a11 protein_coding protein_coding MGP_AJ_T0086424.1 MGP_AJ_G0032943.1 mouse_genomes_project 7 124059018 124069687 + MGP_AJ_P0086424 Slc5a11 protein_coding protein_coding MGP_AJ_T0086425.1 MGP_AJ_G0032943.1 mouse_genomes_project 7 124059018 124078324 + MGP_AJ_P0086425 Slc5a11 protein_coding protein_coding MGP_AJ_T0086426.1 MGP_AJ_G0032943.1 mouse_genomes_project 7 124065742 124104040 + MGP_AJ_P0086426 Slc5a11 protein_coding protein_coding MGP_AJ_T0086427.1 MGP_AJ_G0032943.1 mouse_genomes_project 7 124070583 124080189 + MGP_AJ_P0086427 Slc5a11 protein_coding protein_coding MGP_AJ_T0086428.1 MGP_AJ_G0032943.1 mouse_genomes_project 7 124095336 124097949 + Slc5a11 protein_coding processed_transcript MGP_AJ_T0102790.1 MGP_AJ_G0040531.1 mouse_genomes_project 7 14464423 14464784 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0002207.1 MGP_AJ_G0002119.1 mouse_genomes_project 7 35196593 35197751 + TEC TEC MGP_AJ_T0085557.1 MGP_AJ_G0032635.1 mouse_genomes_project 7 103870090 103871005 - MGP_AJ_P0085557 protein_coding protein_coding MGP_AJ_T0087178.1 MGP_AJ_G0033075.1 mouse_genomes_project 7 131423901 131613109 + MGP_AJ_P0087178 Tacc2 protein_coding unknown_likely_coding MGP_AJ_T0087179.1 MGP_AJ_G0033075.1 mouse_genomes_project 7 131426710 131613106 + MGP_AJ_P0087179 Tacc2 protein_coding protein_coding MGP_AJ_T0087180.1 MGP_AJ_G0033075.1 mouse_genomes_project 7 131426710 131613108 + MGP_AJ_P0087180 Tacc2 protein_coding protein_coding MGP_AJ_T0087181.1 MGP_AJ_G0033075.1 mouse_genomes_project 7 131540879 131613108 + MGP_AJ_P0087181 Tacc2 protein_coding protein_coding MGP_AJ_T0015698.1 MGP_AJ_G0013793.1 mouse_genomes_project 7 2840451 2840583 + processed_pseudogene processed_pseudogene MGP_AJ_T0083134.1 MGP_AJ_G0032025.1 mouse_genomes_project 7 29066291 29070433 - MGP_AJ_P0083134 Ffar1 protein_coding protein_coding MGP_AJ_T0084678.1 MGP_AJ_G0032387.1 mouse_genomes_project 7 80312777 80334793 + MGP_AJ_P0084678 Vps33b protein_coding protein_coding MGP_AJ_T0084679.1 MGP_AJ_G0032387.1 mouse_genomes_project 7 80312807 80334785 + MGP_AJ_P0084679 Vps33b protein_coding nonsense_mediated_decay MGP_AJ_T0084680.1 MGP_AJ_G0032387.1 mouse_genomes_project 7 80312862 80329033 + Vps33b protein_coding retained_intron MGP_AJ_T0084681.1 MGP_AJ_G0032387.1 mouse_genomes_project 7 80312868 80334783 + MGP_AJ_P0084681 Vps33b protein_coding nonsense_mediated_decay MGP_AJ_T0084682.1 MGP_AJ_G0032387.1 mouse_genomes_project 7 80317616 80327358 + Vps33b protein_coding processed_transcript MGP_AJ_T0084683.1 MGP_AJ_G0032387.1 mouse_genomes_project 7 80333291 80334970 + MGP_AJ_P0084683 Vps33b protein_coding protein_coding MGP_AJ_T0084684.1 MGP_AJ_G0032387.1 mouse_genomes_project 7 80333339 80334162 + Vps33b protein_coding retained_intron MGP_AJ_T0010824.1 MGP_AJ_G0008946.1 mouse_genomes_project 7 125476 125538 - Mir292b miRNA miRNA MGP_AJ_T0081548.1 MGP_AJ_G0031557.1 mouse_genomes_project 7 2025091 2043372 + MGP_AJ_P0081548 U2af2 protein_coding protein_coding MGP_AJ_T0081549.1 MGP_AJ_G0031557.1 mouse_genomes_project 7 2030226 2042927 + MGP_AJ_P0081549 U2af2 protein_coding protein_coding MGP_AJ_T0010925.1 MGP_AJ_G0009047.1 mouse_genomes_project 7 134862217 134862336 - Gm23631 miRNA miRNA MGP_AJ_T0101441.1 MGP_AJ_G0039407.1 mouse_genomes_project 7 110162937 110163067 + Gm24888 snoRNA snoRNA MGP_AJ_T0085306.1 MGP_AJ_G0032549.1 mouse_genomes_project 7 100928740 100942442 - MGP_AJ_P0085306 Plekhb1 protein_coding protein_coding MGP_AJ_T0085307.1 MGP_AJ_G0032549.1 mouse_genomes_project 7 100929718 100942469 - MGP_AJ_P0085307 Plekhb1 protein_coding protein_coding MGP_AJ_T0085308.1 MGP_AJ_G0032549.1 mouse_genomes_project 7 100929718 100947846 - MGP_AJ_P0085308 Plekhb1 protein_coding protein_coding MGP_AJ_T0085309.1 MGP_AJ_G0032549.1 mouse_genomes_project 7 100929718 100947895 - MGP_AJ_P0085309 Plekhb1 protein_coding protein_coding MGP_AJ_T0085310.1 MGP_AJ_G0032549.1 mouse_genomes_project 7 100929722 100943945 - MGP_AJ_P0085310 Plekhb1 protein_coding protein_coding MGP_AJ_T0085311.1 MGP_AJ_G0032549.1 mouse_genomes_project 7 100929722 100943945 - MGP_AJ_P0085311 Plekhb1 protein_coding protein_coding MGP_AJ_T0085312.1 MGP_AJ_G0032549.1 mouse_genomes_project 7 100930465 100943853 - MGP_AJ_P0085312 Plekhb1 protein_coding protein_coding MGP_AJ_T0085313.1 MGP_AJ_G0032549.1 mouse_genomes_project 7 100930626 100939280 - Plekhb1 protein_coding retained_intron MGP_AJ_T0085314.1 MGP_AJ_G0032549.1 mouse_genomes_project 7 100930768 100947796 - MGP_AJ_P0085314 Plekhb1 protein_coding protein_coding MGP_AJ_T0085315.1 MGP_AJ_G0032549.1 mouse_genomes_project 7 100931390 100942592 - MGP_AJ_P0085315 Plekhb1 protein_coding protein_coding MGP_AJ_T0085316.1 MGP_AJ_G0032549.1 mouse_genomes_project 7 100931458 100943911 - MGP_AJ_P0085316 Plekhb1 protein_coding protein_coding MGP_AJ_T0086237.1 MGP_AJ_G0032899.1 mouse_genomes_project 7 120444975 120450307 - MGP_AJ_P0086237 Thumpd1 protein_coding protein_coding MGP_AJ_T0081778.1 MGP_AJ_G0031661.1 mouse_genomes_project 7 13216558 13226235 + MGP_AJ_P0081778 Obox5 protein_coding protein_coding MGP_AJ_T0081779.1 MGP_AJ_G0031661.1 mouse_genomes_project 7 13216645 13227379 + MGP_AJ_P0081779 Obox5 protein_coding protein_coding MGP_AJ_T0081780.1 MGP_AJ_G0031661.1 mouse_genomes_project 7 13216649 13226240 + MGP_AJ_P0081780 Obox5 protein_coding protein_coding MGP_AJ_T0085591.1 MGP_AJ_G0032667.1 mouse_genomes_project 7 104424850 104553171 - MGP_AJ_P0085591 protein_coding protein_coding MGP_AJ_T0086762.1 MGP_AJ_G0032998.1 mouse_genomes_project 7 127842647 127844949 - MGP_AJ_P0086762 protein_coding protein_coding MGP_AJ_T0086763.1 MGP_AJ_G0032998.1 mouse_genomes_project 7 127842661 127847924 - protein_coding retained_intron MGP_AJ_T0086767.1 MGP_AJ_G0032998.1 mouse_genomes_project 7 127843827 127848694 - protein_coding processed_transcript MGP_AJ_T0086768.1 MGP_AJ_G0032998.1 mouse_genomes_project 7 127843830 127848636 - MGP_AJ_P0086768 protein_coding protein_coding MGP_AJ_T0086769.1 MGP_AJ_G0032998.1 mouse_genomes_project 7 127844367 127848686 - protein_coding processed_transcript MGP_AJ_T0008927.1 MGP_AJ_G0007206.1 mouse_genomes_project 7 73505679 73506414 - Gm44738 lincRNA lincRNA MGP_AJ_T0015735.1 MGP_AJ_G0013830.1 mouse_genomes_project 7 16470147 16470717 + processed_pseudogene processed_pseudogene MGP_AJ_T0015790.1 MGP_AJ_G0013885.1 mouse_genomes_project 7 34715573 34717946 + processed_pseudogene processed_pseudogene MGP_AJ_T0084332.1 MGP_AJ_G0032319.1 mouse_genomes_project 7 64592246 64993566 - MGP_AJ_P0084332 Fam189a1 protein_coding protein_coding MGP_AJ_T0084333.1 MGP_AJ_G0032319.1 mouse_genomes_project 7 64592268 64609806 - Fam189a1 protein_coding processed_transcript MGP_AJ_T0084334.1 MGP_AJ_G0032319.1 mouse_genomes_project 7 64603877 64759254 - MGP_AJ_P0084334 Fam189a1 protein_coding protein_coding MGP_AJ_T0084335.1 MGP_AJ_G0032319.1 mouse_genomes_project 7 64622843 64993412 - MGP_AJ_P0084335 Fam189a1 protein_coding protein_coding MGP_AJ_T0084336.1 MGP_AJ_G0032319.1 mouse_genomes_project 7 64655438 64688788 - Fam189a1 protein_coding retained_intron MGP_AJ_T0005174.1 MGP_AJ_G0004405.1 mouse_genomes_project 7 26016612 26019684 + Gm26891 antisense antisense MGP_AJ_T0085560.1 MGP_AJ_G0032638.1 mouse_genomes_project 7 103912578 103913526 - MGP_AJ_P0085560 Olfr610 protein_coding protein_coding MGP_AJ_T0018330.1 MGP_AJ_G0015633.1 mouse_genomes_project 7 22654839 22678096 + Gm5893 processed_transcript processed_transcript MGP_AJ_T0018331.1 MGP_AJ_G0015633.1 mouse_genomes_project 7 22654839 22678113 + Gm5893 processed_transcript lincRNA MGP_AJ_T0018332.1 MGP_AJ_G0015633.1 mouse_genomes_project 7 22658153 22661917 + Gm5893 processed_transcript retained_intron MGP_AJ_T0018333.1 MGP_AJ_G0015633.1 mouse_genomes_project 7 22664332 22678111 + Gm5893 processed_transcript retained_intron MGP_AJ_T0018392.1 MGP_AJ_G0015655.1 mouse_genomes_project 7 73827913 73837446 + Gm38143 processed_transcript processed_transcript MGP_AJ_T0100153.1 MGP_AJ_G0038119.1 mouse_genomes_project 7 61915678 61915785 - Gm23431 snRNA snRNA MGP_AJ_T0005297.1 MGP_AJ_G0004493.1 mouse_genomes_project 7 129059656 129064830 - Gm44850 antisense antisense MGP_AJ_T0101432.1 MGP_AJ_G0039398.1 mouse_genomes_project 7 97736882 97736991 + Gm24412 snoRNA snoRNA MGP_AJ_T0087364.1 MGP_AJ_G0033124.1 mouse_genomes_project 7 139787028 139798022 - MGP_AJ_P0087364 Mapk1ip1 protein_coding protein_coding MGP_AJ_T0087365.1 MGP_AJ_G0033124.1 mouse_genomes_project 7 139787038 139798009 - MGP_AJ_P0087365 Mapk1ip1 protein_coding protein_coding MGP_AJ_T0087366.1 MGP_AJ_G0033124.1 mouse_genomes_project 7 139787083 139798006 - MGP_AJ_P0087366 Mapk1ip1 protein_coding protein_coding MGP_AJ_T0002317.1 MGP_AJ_G0002228.1 mouse_genomes_project 7 129585892 129586888 - TEC TEC MGP_AJ_T0100138.1 MGP_AJ_G0038104.1 mouse_genomes_project 7 16360718 16360825 - Gm24464 snRNA snRNA MGP_AJ_T0018396.1 MGP_AJ_G0015657.1 mouse_genomes_project 7 81132523 81139689 + Platr32 processed_transcript processed_transcript MGP_AJ_T0085661.1 MGP_AJ_G0032709.1 mouse_genomes_project 7 105295634 105296588 + MGP_AJ_P0085661 Olfr669 protein_coding protein_coding MGP_AJ_T0081993.1 MGP_AJ_G0031732.1 mouse_genomes_project 7 16716486 16723031 + MGP_AJ_P0081993 Dmwd protein_coding protein_coding MGP_AJ_T0081994.1 MGP_AJ_G0031732.1 mouse_genomes_project 7 16716517 16723031 + MGP_AJ_P0081994 Dmwd protein_coding protein_coding MGP_AJ_T0081995.1 MGP_AJ_G0031732.1 mouse_genomes_project 7 16718245 16723030 + Dmwd protein_coding processed_transcript MGP_AJ_T0081996.1 MGP_AJ_G0031732.1 mouse_genomes_project 7 16718278 16722757 + Dmwd protein_coding processed_transcript MGP_AJ_T0010834.1 MGP_AJ_G0008956.1 mouse_genomes_project 7 3795499 3795583 + Mir3099 miRNA miRNA MGP_AJ_T0086835.1 MGP_AJ_G0033013.1 mouse_genomes_project 7 128105812 128107988 - MGP_AJ_P0086835 protein_coding protein_coding MGP_AJ_T0011691.1 MGP_AJ_G0009813.1 mouse_genomes_project 7 91301132 91301338 - Gm27660 misc_RNA misc_RNA MGP_AJ_T0102760.1 MGP_AJ_G0040501.1 mouse_genomes_project 7 9258081 9259341 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0002279.1 MGP_AJ_G0002190.1 mouse_genomes_project 7 79950913 79953135 - TEC TEC MGP_AJ_T0082654.1 MGP_AJ_G0031911.1 mouse_genomes_project 7 26286329 26295852 + MGP_AJ_P0082654 Fbl protein_coding protein_coding MGP_AJ_T0101419.1 MGP_AJ_G0039385.1 mouse_genomes_project 7 59293165 59293234 - snoRNA snoRNA MGP_AJ_T0085593.1 MGP_AJ_G0032669.1 mouse_genomes_project 7 104440012 104440963 - MGP_AJ_P0085593 Olfr639 protein_coding protein_coding MGP_AJ_T0087389.1 MGP_AJ_G0033129.1 mouse_genomes_project 7 140044903 140148847 - MGP_AJ_P0087389 Stk32c protein_coding protein_coding MGP_AJ_T0087390.1 MGP_AJ_G0033129.1 mouse_genomes_project 7 140044903 140124331 - MGP_AJ_P0087390 Stk32c protein_coding protein_coding MGP_AJ_T0018325.1 MGP_AJ_G0015630.1 mouse_genomes_project 7 2013663 2020056 - Gm15510 processed_transcript processed_transcript MGP_AJ_T0018326.1 MGP_AJ_G0015630.1 mouse_genomes_project 7 2013664 2019971 - Gm15510 processed_transcript processed_transcript MGP_AJ_T0083412.1 MGP_AJ_G0032078.1 mouse_genomes_project 7 35959152 35967258 - MGP_AJ_P0083412 Zfp536 protein_coding protein_coding MGP_AJ_T0083413.1 MGP_AJ_G0032078.1 mouse_genomes_project 7 35966381 36257704 - MGP_AJ_P0083413 Zfp536 protein_coding protein_coding MGP_AJ_T0083414.1 MGP_AJ_G0032078.1 mouse_genomes_project 7 35966386 36258044 - MGP_AJ_P0083414 Zfp536 protein_coding protein_coding MGP_AJ_T0083415.1 MGP_AJ_G0032078.1 mouse_genomes_project 7 35966399 36259062 - MGP_AJ_P0083415 Zfp536 protein_coding protein_coding MGP_AJ_T0083416.1 MGP_AJ_G0032078.1 mouse_genomes_project 7 35966454 36260978 - MGP_AJ_P0083416 Zfp536 protein_coding protein_coding MGP_AJ_T0083417.1 MGP_AJ_G0032078.1 mouse_genomes_project 7 36057460 36258864 - MGP_AJ_P0083417 Zfp536 protein_coding protein_coding MGP_AJ_T0083418.1 MGP_AJ_G0032078.1 mouse_genomes_project 7 36057590 36261746 - MGP_AJ_P0083418 Zfp536 protein_coding protein_coding MGP_AJ_T0083419.1 MGP_AJ_G0032078.1 mouse_genomes_project 7 36198483 36261682 - Zfp536 protein_coding processed_transcript MGP_AJ_T0083420.1 MGP_AJ_G0032078.1 mouse_genomes_project 7 36204727 36261667 - Zfp536 protein_coding retained_intron MGP_AJ_T0083421.1 MGP_AJ_G0032078.1 mouse_genomes_project 7 36260483 36261688 - Zfp536 protein_coding retained_intron MGP_AJ_T0010916.1 MGP_AJ_G0009038.1 mouse_genomes_project 7 127184673 127184748 - Mir7058 miRNA miRNA MGP_AJ_T0081981.1 MGP_AJ_G0031729.1 mouse_genomes_project 7 16652538 16663748 - MGP_AJ_P0081981 Foxa3 protein_coding protein_coding MGP_AJ_T0005173.1 MGP_AJ_G0004404.1 mouse_genomes_project 7 25530372 25535762 - Gm15541 antisense antisense MGP_AJ_T0083439.1 MGP_AJ_G0032082.1 mouse_genomes_project 7 36729398 36740323 - MGP_AJ_P0083439 Plekhf1 protein_coding protein_coding MGP_AJ_T0087596.1 MGP_AJ_G0033199.1 mouse_genomes_project 7 142206452 142209251 + MGP_AJ_P0087596 Rassf7 protein_coding protein_coding MGP_AJ_T0087597.1 MGP_AJ_G0033199.1 mouse_genomes_project 7 142206467 142208593 + Rassf7 protein_coding processed_transcript MGP_AJ_T0087598.1 MGP_AJ_G0033199.1 mouse_genomes_project 7 142206491 142208106 + Rassf7 protein_coding processed_transcript MGP_AJ_T0087599.1 MGP_AJ_G0033199.1 mouse_genomes_project 7 142206570 142208071 + MGP_AJ_P0087599 Rassf7 protein_coding protein_coding MGP_AJ_T0087600.1 MGP_AJ_G0033199.1 mouse_genomes_project 7 142206795 142208065 + MGP_AJ_P0087600 Rassf7 protein_coding protein_coding MGP_AJ_T0087601.1 MGP_AJ_G0033199.1 mouse_genomes_project 7 142207227 142208198 + MGP_AJ_P0087601 Rassf7 protein_coding protein_coding MGP_AJ_T0087602.1 MGP_AJ_G0033199.1 mouse_genomes_project 7 142207292 142208306 + MGP_AJ_P0087602 Rassf7 protein_coding protein_coding MGP_AJ_T0100173.1 MGP_AJ_G0038139.1 mouse_genomes_project 7 110419037 110419144 - Gm22822 snRNA snRNA MGP_AJ_T0015794.1 MGP_AJ_G0013889.1 mouse_genomes_project 7 37966577 37970175 - processed_pseudogene processed_pseudogene MGP_AJ_T0087019.1 MGP_AJ_G0033050.1 mouse_genomes_project 7 128813722 128831663 + MGP_AJ_P0087019 Fus protein_coding protein_coding MGP_AJ_T0087020.1 MGP_AJ_G0033050.1 mouse_genomes_project 7 128813755 128827989 + MGP_AJ_P0087020 Fus protein_coding protein_coding MGP_AJ_T0087021.1 MGP_AJ_G0033050.1 mouse_genomes_project 7 128813756 128827986 + Fus protein_coding retained_intron MGP_AJ_T0087022.1 MGP_AJ_G0033050.1 mouse_genomes_project 7 128813756 128820274 + Fus protein_coding retained_intron MGP_AJ_T0087023.1 MGP_AJ_G0033050.1 mouse_genomes_project 7 128813756 128818161 + Fus protein_coding processed_transcript MGP_AJ_T0087024.1 MGP_AJ_G0033050.1 mouse_genomes_project 7 128813773 128827989 + MGP_AJ_P0087024 Fus protein_coding protein_coding MGP_AJ_T0087025.1 MGP_AJ_G0033050.1 mouse_genomes_project 7 128817734 128820274 + Fus protein_coding retained_intron MGP_AJ_T0087026.1 MGP_AJ_G0033050.1 mouse_genomes_project 7 128817822 128823222 + Fus protein_coding processed_transcript MGP_AJ_T0087027.1 MGP_AJ_G0033050.1 mouse_genomes_project 7 128820089 128824187 + Fus protein_coding retained_intron MGP_AJ_T0087028.1 MGP_AJ_G0033050.1 mouse_genomes_project 7 128820925 128822784 + Fus protein_coding retained_intron MGP_AJ_T0087029.1 MGP_AJ_G0033050.1 mouse_genomes_project 7 128821570 128830848 + MGP_AJ_P0087029 Fus protein_coding protein_coding MGP_AJ_T0087030.1 MGP_AJ_G0033050.1 mouse_genomes_project 7 128821634 128826194 + Fus protein_coding retained_intron MGP_AJ_T0087031.1 MGP_AJ_G0033050.1 mouse_genomes_project 7 128823264 128827407 + MGP_AJ_P0087031 Fus protein_coding protein_coding MGP_AJ_T0087032.1 MGP_AJ_G0033050.1 mouse_genomes_project 7 128824091 128826144 + Fus protein_coding retained_intron MGP_AJ_T0087033.1 MGP_AJ_G0033050.1 mouse_genomes_project 7 128826173 128827787 + Fus protein_coding retained_intron MGP_AJ_T0087034.1 MGP_AJ_G0033050.1 mouse_genomes_project 7 128829036 128831663 + MGP_AJ_P0087034 Fus protein_coding protein_coding MGP_AJ_T0081502.1 MGP_AJ_G0031535.1 mouse_genomes_project 7 1723581 1724986 + MGP_AJ_P0081502 Tmem190 protein_coding protein_coding MGP_AJ_T0081503.1 MGP_AJ_G0031535.1 mouse_genomes_project 7 1723595 1724003 + Tmem190 protein_coding retained_intron MGP_AJ_T0085575.1 MGP_AJ_G0032653.1 mouse_genomes_project 7 104199259 104201901 - MGP_AJ_P0085575 protein_coding protein_coding MGP_AJ_T0087794.1 MGP_AJ_G0033238.1 mouse_genomes_project 7 143425609 143430625 + Syt8 protein_coding processed_transcript MGP_AJ_T0087795.1 MGP_AJ_G0033238.1 mouse_genomes_project 7 143425705 143429718 + Syt8 protein_coding processed_transcript MGP_AJ_T0087796.1 MGP_AJ_G0033238.1 mouse_genomes_project 7 143425736 143431146 + MGP_AJ_P0087796 Syt8 protein_coding protein_coding MGP_AJ_T0087797.1 MGP_AJ_G0033238.1 mouse_genomes_project 7 143425760 143431078 + Syt8 protein_coding retained_intron MGP_AJ_T0087798.1 MGP_AJ_G0033238.1 mouse_genomes_project 7 143425760 143431078 + MGP_AJ_P0087798 Syt8 protein_coding protein_coding MGP_AJ_T0087799.1 MGP_AJ_G0033238.1 mouse_genomes_project 7 143425760 143431078 + MGP_AJ_P0087799 Syt8 protein_coding protein_coding MGP_AJ_T0087800.1 MGP_AJ_G0033238.1 mouse_genomes_project 7 143427585 143431055 + MGP_AJ_P0087800 Syt8 protein_coding protein_coding MGP_AJ_T0087801.1 MGP_AJ_G0033238.1 mouse_genomes_project 7 143428881 143429292 + MGP_AJ_P0087801 Syt8 protein_coding protein_coding MGP_AJ_T0087802.1 MGP_AJ_G0033238.1 mouse_genomes_project 7 143429170 143430734 + Syt8 protein_coding retained_intron MGP_AJ_T0087803.1 MGP_AJ_G0033238.1 mouse_genomes_project 7 143429764 143431062 + Syt8 protein_coding retained_intron MGP_AJ_T0083761.1 MGP_AJ_G0032163.1 mouse_genomes_project 7 44242929 44256677 - MGP_AJ_P0083761 Med25 protein_coding protein_coding MGP_AJ_T0010926.1 MGP_AJ_G0009048.1 mouse_genomes_project 7 136497638 136497759 + Mir1962 miRNA miRNA MGP_AJ_T0086324.1 MGP_AJ_G0032922.1 mouse_genomes_project 7 121790017 121832521 + MGP_AJ_P0086324 Mettl9 protein_coding protein_coding MGP_AJ_T0086381.1 MGP_AJ_G0032936.1 mouse_genomes_project 7 122959819 122971599 + MGP_AJ_P0086381 Plk1 protein_coding protein_coding MGP_AJ_T0086382.1 MGP_AJ_G0032936.1 mouse_genomes_project 7 122959887 122965665 + MGP_AJ_P0086382 Plk1 protein_coding nonsense_mediated_decay MGP_AJ_T0086383.1 MGP_AJ_G0032936.1 mouse_genomes_project 7 122959961 122962234 + MGP_AJ_P0086383 Plk1 protein_coding protein_coding MGP_AJ_T0087493.1 MGP_AJ_G0033164.1 mouse_genomes_project 7 141588526 141589483 + MGP_AJ_P0087493 protein_coding protein_coding MGP_AJ_T0081933.1 MGP_AJ_G0031703.1 mouse_genomes_project 7 14686324 14698499 + MGP_AJ_P0081933 Psg29 protein_coding protein_coding MGP_AJ_T0098722.1 MGP_AJ_G0036706.1 mouse_genomes_project 7 27832761 27832877 - n-R5s153 rRNA rRNA MGP_AJ_T0100194.1 MGP_AJ_G0038160.1 mouse_genomes_project 7 142171834 142171930 - Gm22019 snRNA snRNA MGP_AJ_T0005245.1 MGP_AJ_G0004458.1 mouse_genomes_project 7 89727934 89729296 + Prss23os antisense antisense MGP_AJ_T0005246.1 MGP_AJ_G0004458.1 mouse_genomes_project 7 89727950 89728419 + Prss23os antisense antisense MGP_AJ_T0085197.1 MGP_AJ_G0032519.1 mouse_genomes_project 7 99398251 99426945 - MGP_AJ_P0085197 Dgat2 protein_coding protein_coding MGP_AJ_T0081781.1 MGP_AJ_G0031662.1 mouse_genomes_project 7 13285682 13291600 - MGP_AJ_P0081781 Obox6 protein_coding protein_coding MGP_AJ_T0084941.1 MGP_AJ_G0032451.1 mouse_genomes_project 7 86583281 86593108 + MGP_AJ_P0084941 Olfr301 protein_coding protein_coding MGP_AJ_T0083308.1 MGP_AJ_G0032059.1 mouse_genomes_project 7 33109970 33253510 - MGP_AJ_P0083308 Chst8 protein_coding protein_coding MGP_AJ_T0083309.1 MGP_AJ_G0032059.1 mouse_genomes_project 7 33109970 33253510 - MGP_AJ_P0083309 Chst8 protein_coding protein_coding MGP_AJ_T0083310.1 MGP_AJ_G0032059.1 mouse_genomes_project 7 33110260 33253510 - MGP_AJ_P0083310 Chst8 protein_coding protein_coding MGP_AJ_T0083311.1 MGP_AJ_G0032059.1 mouse_genomes_project 7 33111320 33253535 - Chst8 protein_coding processed_transcript MGP_AJ_T0083312.1 MGP_AJ_G0032059.1 mouse_genomes_project 7 33130154 33133286 - Chst8 protein_coding processed_transcript MGP_AJ_T0083313.1 MGP_AJ_G0032059.1 mouse_genomes_project 7 33130957 33253496 - Chst8 protein_coding processed_transcript MGP_AJ_T0082901.1 MGP_AJ_G0031973.1 mouse_genomes_project 7 28240539 28246878 - MGP_AJ_P0082901 Zfp14 protein_coding protein_coding MGP_AJ_T0008872.1 MGP_AJ_G0007163.1 mouse_genomes_project 7 42638783 42643937 - Gm2511 lincRNA lincRNA MGP_AJ_T0008873.1 MGP_AJ_G0007163.1 mouse_genomes_project 7 42638786 42646589 - Gm2511 lincRNA lincRNA MGP_AJ_T0008874.1 MGP_AJ_G0007163.1 mouse_genomes_project 7 42643186 42646166 - Gm2511 lincRNA lincRNA MGP_AJ_T0002240.1 MGP_AJ_G0002152.1 mouse_genomes_project 7 63823522 63825053 + TEC TEC MGP_AJ_T0086844.1 MGP_AJ_G0033016.1 mouse_genomes_project 7 128207152 128210686 - MGP_AJ_P0086844 protein_coding protein_coding MGP_AJ_T0086846.1 MGP_AJ_G0033016.1 mouse_genomes_project 7 128209172 128210649 - MGP_AJ_P0086846 protein_coding protein_coding MGP_AJ_T0086847.1 MGP_AJ_G0033016.1 mouse_genomes_project 7 128209210 128210652 - protein_coding retained_intron MGP_AJ_T0085377.1 MGP_AJ_G0032560.1 mouse_genomes_project 7 101888427 101889215 - MGP_AJ_P0085377 protein_coding protein_coding MGP_AJ_T0086856.1 MGP_AJ_G0033021.1 mouse_genomes_project 7 128292248 128299727 - MGP_AJ_P0086856 Zfp689 protein_coding protein_coding MGP_AJ_T0086857.1 MGP_AJ_G0033021.1 mouse_genomes_project 7 128294323 128299562 - MGP_AJ_P0086857 Zfp689 protein_coding protein_coding MGP_AJ_T0084640.1 MGP_AJ_G0032377.1 mouse_genomes_project 7 79845091 79866162 - MGP_AJ_P0084640 protein_coding unknown_likely_coding MGP_AJ_T0084641.1 MGP_AJ_G0032377.1 mouse_genomes_project 7 79845099 79848795 - protein_coding retained_intron MGP_AJ_T0084642.1 MGP_AJ_G0032377.1 mouse_genomes_project 7 79845559 79871164 - MGP_AJ_P0084642 protein_coding protein_coding MGP_AJ_T0084643.1 MGP_AJ_G0032377.1 mouse_genomes_project 7 79865038 79883960 - MGP_AJ_P0084643 protein_coding protein_coding MGP_AJ_T0084644.1 MGP_AJ_G0032377.1 mouse_genomes_project 7 79865596 79871174 - protein_coding processed_transcript MGP_AJ_T0015831.1 MGP_AJ_G0013926.1 mouse_genomes_project 7 55592551 55592909 + processed_pseudogene processed_pseudogene MGP_AJ_T0102793.1 MGP_AJ_G0040534.1 mouse_genomes_project 7 15347494 15410192 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0100172.1 MGP_AJ_G0038138.1 mouse_genomes_project 7 109715833 109715940 - Gm25450 snRNA snRNA MGP_AJ_T0102789.1 MGP_AJ_G0040530.1 mouse_genomes_project 7 13272373 13278200 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0009021.1 MGP_AJ_G0007263.1 mouse_genomes_project 7 126183337 126185496 + 4930571K23Rik lincRNA lincRNA MGP_AJ_T0009022.1 MGP_AJ_G0007263.1 mouse_genomes_project 7 126183488 126185490 + 4930571K23Rik lincRNA lincRNA MGP_AJ_T0085503.1 MGP_AJ_G0032586.1 mouse_genomes_project 7 102841521 102845732 - MGP_AJ_P0085503 Olfr544 protein_coding protein_coding MGP_AJ_T0084105.1 MGP_AJ_G0032264.1 mouse_genomes_project 7 46829913 47076969 - MGP_AJ_P0084105 protein_coding protein_coding MGP_AJ_T0084106.1 MGP_AJ_G0032264.1 mouse_genomes_project 7 46829914 47113736 - MGP_AJ_P0084106 protein_coding protein_coding MGP_AJ_T0018430.1 MGP_AJ_G0015676.1 mouse_genomes_project 7 140906387 140919993 + Gm16201 processed_transcript processed_transcript MGP_AJ_T0018431.1 MGP_AJ_G0015676.1 mouse_genomes_project 7 140906431 140939676 + Gm16201 processed_transcript processed_transcript MGP_AJ_T0087460.1 MGP_AJ_G0033146.1 mouse_genomes_project 7 141055101 141065601 - MGP_AJ_P0087460 Echs1 protein_coding protein_coding MGP_AJ_T0087461.1 MGP_AJ_G0033146.1 mouse_genomes_project 7 141055109 141065514 - Echs1 protein_coding retained_intron MGP_AJ_T0087462.1 MGP_AJ_G0033146.1 mouse_genomes_project 7 141055475 141062359 - MGP_AJ_P0087462 Echs1 protein_coding protein_coding MGP_AJ_T0087463.1 MGP_AJ_G0033146.1 mouse_genomes_project 7 141058117 141065540 - Echs1 protein_coding retained_intron MGP_AJ_T0087464.1 MGP_AJ_G0033146.1 mouse_genomes_project 7 141058117 141065540 - Echs1 protein_coding retained_intron MGP_AJ_T0087465.1 MGP_AJ_G0033146.1 mouse_genomes_project 7 141061091 141065532 - Echs1 protein_coding processed_transcript MGP_AJ_T0015712.1 MGP_AJ_G0013807.1 mouse_genomes_project 7 10890463 10893896 + processed_pseudogene processed_pseudogene MGP_AJ_T0085525.1 MGP_AJ_G0032606.1 mouse_genomes_project 7 103224117 103225068 + MGP_AJ_P0085525 Olfr568 protein_coding protein_coding MGP_AJ_T0002315.1 MGP_AJ_G0002226.1 mouse_genomes_project 7 128839226 128842550 + TEC TEC MGP_AJ_T0082222.1 MGP_AJ_G0031805.1 mouse_genomes_project 7 22169496 22183653 + MGP_AJ_P0082222 Kcnn4 protein_coding protein_coding MGP_AJ_T0082223.1 MGP_AJ_G0031805.1 mouse_genomes_project 7 22169532 22183649 + MGP_AJ_P0082223 Kcnn4 protein_coding protein_coding MGP_AJ_T0082224.1 MGP_AJ_G0031805.1 mouse_genomes_project 7 22169571 22183207 + MGP_AJ_P0082224 Kcnn4 protein_coding protein_coding MGP_AJ_T0082225.1 MGP_AJ_G0031805.1 mouse_genomes_project 7 22180598 22183237 + Kcnn4 protein_coding retained_intron MGP_AJ_T0082226.1 MGP_AJ_G0031805.1 mouse_genomes_project 7 22181502 22185162 + Kcnn4 protein_coding retained_intron MGP_AJ_T0083655.1 MGP_AJ_G0032144.1 mouse_genomes_project 7 43852907 43857469 + MGP_AJ_P0083655 Fam71e1 protein_coding protein_coding MGP_AJ_T0083656.1 MGP_AJ_G0032144.1 mouse_genomes_project 7 43852914 43856666 + Fam71e1 protein_coding retained_intron MGP_AJ_T0083657.1 MGP_AJ_G0032144.1 mouse_genomes_project 7 43852925 43853475 + MGP_AJ_P0083657 Fam71e1 protein_coding protein_coding MGP_AJ_T0083658.1 MGP_AJ_G0032144.1 mouse_genomes_project 7 43852984 43857462 + MGP_AJ_P0083658 Fam71e1 protein_coding protein_coding MGP_AJ_T0083659.1 MGP_AJ_G0032144.1 mouse_genomes_project 7 43852994 43857462 + MGP_AJ_P0083659 Fam71e1 protein_coding nonsense_mediated_decay MGP_AJ_T0083660.1 MGP_AJ_G0032144.1 mouse_genomes_project 7 43852998 43857815 + Fam71e1 protein_coding retained_intron MGP_AJ_T0083661.1 MGP_AJ_G0032144.1 mouse_genomes_project 7 43852998 43854336 + Fam71e1 protein_coding retained_intron MGP_AJ_T0083662.1 MGP_AJ_G0032144.1 mouse_genomes_project 7 43853020 43856695 + Fam71e1 protein_coding retained_intron MGP_AJ_T0083663.1 MGP_AJ_G0032144.1 mouse_genomes_project 7 43856753 43857461 + Fam71e1 protein_coding processed_transcript MGP_AJ_T0085065.1 MGP_AJ_G0032492.1 mouse_genomes_project 7 97170395 97282839 + MGP_AJ_P0085065 Nars2 protein_coding protein_coding MGP_AJ_T0085066.1 MGP_AJ_G0032492.1 mouse_genomes_project 7 97170411 97221897 + Nars2 protein_coding processed_transcript MGP_AJ_T0085067.1 MGP_AJ_G0032492.1 mouse_genomes_project 7 97170452 97258256 + MGP_AJ_P0085067 Nars2 protein_coding protein_coding MGP_AJ_T0085068.1 MGP_AJ_G0032492.1 mouse_genomes_project 7 97242733 97281023 + MGP_AJ_P0085068 Nars2 protein_coding nonsense_mediated_decay MGP_AJ_T0085069.1 MGP_AJ_G0032492.1 mouse_genomes_project 7 97257618 97281053 + MGP_AJ_P0085069 Nars2 protein_coding nonsense_mediated_decay MGP_AJ_T0085794.1 MGP_AJ_G0032754.1 mouse_genomes_project 7 107402921 107403872 - MGP_AJ_P0085794 Olfr699 protein_coding protein_coding MGP_AJ_T0015819.1 MGP_AJ_G0013914.1 mouse_genomes_project 7 42633901 42634454 + processed_pseudogene processed_pseudogene MGP_AJ_T0102884.1 MGP_AJ_G0040624.1 mouse_genomes_project 7 86358230 86359100 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0015737.1 MGP_AJ_G0013832.1 mouse_genomes_project 7 21803616 21803925 + processed_pseudogene processed_pseudogene MGP_AJ_T0102836.1 MGP_AJ_G0040576.1 mouse_genomes_project 7 46830096 46831014 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0087267.1 MGP_AJ_G0033100.1 mouse_genomes_project 7 133850318 133903767 + MGP_AJ_P0087267 Zranb1 protein_coding protein_coding MGP_AJ_T0087268.1 MGP_AJ_G0033100.1 mouse_genomes_project 7 133900674 133902582 + Zranb1 protein_coding retained_intron MGP_AJ_T0081385.1 MGP_AJ_G0031513.1 mouse_genomes_project 7 1050243 1052703 - MGP_AJ_P0081385 Leng9 protein_coding protein_coding MGP_AJ_T0086270.1 MGP_AJ_G0032905.1 mouse_genomes_project 7 120653491 120829754 - MGP_AJ_P0086270 Dnah3 protein_coding protein_coding MGP_AJ_T0086271.1 MGP_AJ_G0032905.1 mouse_genomes_project 7 120653491 120829754 - MGP_AJ_P0086271 Dnah3 protein_coding unknown_likely_coding MGP_AJ_T0015687.1 MGP_AJ_G0013782.1 mouse_genomes_project 7 876402 876801 - processed_pseudogene processed_pseudogene MGP_AJ_T0085813.1 MGP_AJ_G0032772.1 mouse_genomes_project 7 107718001 107718949 - MGP_AJ_P0085813 protein_coding protein_coding MGP_AJ_T0085799.1 MGP_AJ_G0032758.1 mouse_genomes_project 7 107455445 107456405 + MGP_AJ_P0085799 Olfr703 protein_coding protein_coding MGP_AJ_T0085585.1 MGP_AJ_G0032661.1 mouse_genomes_project 7 104325742 104326666 - MGP_AJ_P0085585 Olfr64 protein_coding protein_coding MGP_AJ_T0002314.1 MGP_AJ_G0002225.1 mouse_genomes_project 7 128742958 128743667 + TEC TEC MGP_AJ_T0081803.1 MGP_AJ_G0031671.1 mouse_genomes_project 7 13580053 13581683 + Kptn protein_coding retained_intron MGP_AJ_T0081804.1 MGP_AJ_G0031671.1 mouse_genomes_project 7 13580053 13588397 + MGP_AJ_P0081804 Kptn protein_coding protein_coding MGP_AJ_T0081805.1 MGP_AJ_G0031671.1 mouse_genomes_project 7 13580087 13581131 + Kptn protein_coding retained_intron MGP_AJ_T0081806.1 MGP_AJ_G0031671.1 mouse_genomes_project 7 13580377 13584744 + Kptn protein_coding retained_intron MGP_AJ_T0081807.1 MGP_AJ_G0031671.1 mouse_genomes_project 7 13580609 13581122 + Kptn protein_coding retained_intron MGP_AJ_T0081808.1 MGP_AJ_G0031671.1 mouse_genomes_project 7 13583694 13584707 + Kptn protein_coding retained_intron MGP_AJ_T0081809.1 MGP_AJ_G0031671.1 mouse_genomes_project 7 13583761 13584886 + Kptn protein_coding retained_intron MGP_AJ_T0081810.1 MGP_AJ_G0031671.1 mouse_genomes_project 7 13586292 13588245 + Kptn protein_coding retained_intron MGP_AJ_T0085289.1 MGP_AJ_G0032545.1 mouse_genomes_project 7 100785988 100798264 - MGP_AJ_P0085289 Dnajb13 protein_coding protein_coding MGP_AJ_T0085290.1 MGP_AJ_G0032545.1 mouse_genomes_project 7 100785991 100796701 - Dnajb13 protein_coding processed_transcript MGP_AJ_T0085291.1 MGP_AJ_G0032545.1 mouse_genomes_project 7 100786049 100795104 - Dnajb13 protein_coding processed_transcript MGP_AJ_T0083344.1 MGP_AJ_G0032067.1 mouse_genomes_project 7 33844779 33849458 - MGP_AJ_P0083344 Faap24 protein_coding protein_coding MGP_AJ_T0083345.1 MGP_AJ_G0032067.1 mouse_genomes_project 7 33844932 33849335 - Faap24 protein_coding retained_intron MGP_AJ_T0083346.1 MGP_AJ_G0032067.1 mouse_genomes_project 7 33845323 33849330 - MGP_AJ_P0083346 Faap24 protein_coding protein_coding MGP_AJ_T0081607.1 MGP_AJ_G0031583.1 mouse_genomes_project 7 3480064 3484293 - MGP_AJ_P0081607 protein_coding protein_coding MGP_AJ_T0009056.1 MGP_AJ_G0007286.1 mouse_genomes_project 7 133809454 133850194 - 1500002F19Rik lincRNA lincRNA MGP_AJ_T0098465.1 MGP_AJ_G0036449.1 mouse_genomes_project 7 61995633 62000191 - pseudogene pseudogene MGP_AJ_T0005287.1 MGP_AJ_G0004485.1 mouse_genomes_project 7 127469024 127470075 - 2510046G10Rik antisense antisense MGP_AJ_T0005288.1 MGP_AJ_G0004485.1 mouse_genomes_project 7 127469704 127470051 - 2510046G10Rik antisense antisense MGP_AJ_T0084835.1 MGP_AJ_G0032409.1 mouse_genomes_project 7 81579032 81583043 - MGP_AJ_P0084835 BC048679 protein_coding protein_coding MGP_AJ_T0084836.1 MGP_AJ_G0032409.1 mouse_genomes_project 7 81579032 81583043 - MGP_AJ_P0084836 BC048679 protein_coding protein_coding MGP_AJ_T0018408.1 MGP_AJ_G0015664.1 mouse_genomes_project 7 116794820 116806814 - 1700003G18Rik processed_transcript sense_overlapping MGP_AJ_T0018409.1 MGP_AJ_G0015664.1 mouse_genomes_project 7 116794959 116806761 - 1700003G18Rik processed_transcript sense_overlapping MGP_AJ_T0018410.1 MGP_AJ_G0015664.1 mouse_genomes_project 7 116805550 116806753 - 1700003G18Rik processed_transcript retained_intron MGP_AJ_T0102767.1 MGP_AJ_G0040508.1 mouse_genomes_project 7 9451603 9452554 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0083945.1 MGP_AJ_G0032220.1 mouse_genomes_project 7 45101057 45106125 + MGP_AJ_P0083945 Dbp protein_coding protein_coding MGP_AJ_T0083946.1 MGP_AJ_G0032220.1 mouse_genomes_project 7 45101593 45106084 + MGP_AJ_P0083946 Dbp protein_coding protein_coding MGP_AJ_T0083947.1 MGP_AJ_G0032220.1 mouse_genomes_project 7 45101593 45106084 + MGP_AJ_P0083947 Dbp protein_coding protein_coding MGP_AJ_T0083948.1 MGP_AJ_G0032220.1 mouse_genomes_project 7 45103073 45105998 + Dbp protein_coding retained_intron MGP_AJ_T0083949.1 MGP_AJ_G0032220.1 mouse_genomes_project 7 45103858 45105866 + Dbp protein_coding retained_intron MGP_AJ_T0015740.1 MGP_AJ_G0013835.1 mouse_genomes_project 7 22102886 22105663 - processed_pseudogene processed_pseudogene MGP_AJ_T0086221.1 MGP_AJ_G0032893.1 mouse_genomes_project 7 120192810 120209434 - MGP_AJ_P0086221 Umod protein_coding protein_coding MGP_AJ_T0005316.1 MGP_AJ_G0004507.1 mouse_genomes_project 7 144582558 144583724 + Gm15579 antisense antisense MGP_AJ_T0085912.1 MGP_AJ_G0032833.1 mouse_genomes_project 7 110443579 110511237 - MGP_AJ_P0085912 Scube2 protein_coding protein_coding MGP_AJ_T0085913.1 MGP_AJ_G0032833.1 mouse_genomes_project 7 110443593 110511330 - MGP_AJ_P0085913 Scube2 protein_coding protein_coding MGP_AJ_T0085914.1 MGP_AJ_G0032833.1 mouse_genomes_project 7 110443736 110511294 - MGP_AJ_P0085914 Scube2 protein_coding protein_coding MGP_AJ_T0085915.1 MGP_AJ_G0032833.1 mouse_genomes_project 7 110443992 110486001 - Scube2 protein_coding processed_transcript MGP_AJ_T0085916.1 MGP_AJ_G0032833.1 mouse_genomes_project 7 110445548 110453137 - Scube2 protein_coding processed_transcript MGP_AJ_T0083371.1 MGP_AJ_G0032071.1 mouse_genomes_project 7 34013239 34022254 - MGP_AJ_P0083371 Nudt19 protein_coding protein_coding MGP_AJ_T0083372.1 MGP_AJ_G0032071.1 mouse_genomes_project 7 34013575 34021144 - Nudt19 protein_coding processed_transcript MGP_AJ_T0083373.1 MGP_AJ_G0032071.1 mouse_genomes_project 7 34014030 34018007 - Nudt19 protein_coding retained_intron MGP_AJ_T0081939.1 MGP_AJ_G0031708.1 mouse_genomes_project 7 15563558 15569443 + MGP_AJ_P0081939 Ceacam12 protein_coding protein_coding MGP_AJ_T0081940.1 MGP_AJ_G0031708.1 mouse_genomes_project 7 15563568 15575614 + MGP_AJ_P0081940 Ceacam12 protein_coding protein_coding MGP_AJ_T0081941.1 MGP_AJ_G0031708.1 mouse_genomes_project 7 15563620 15568057 + MGP_AJ_P0081941 Ceacam12 protein_coding protein_coding MGP_AJ_T0082286.1 MGP_AJ_G0031824.1 mouse_genomes_project 7 22706970 22714481 + MGP_AJ_P0082286 Dmrtc2 protein_coding protein_coding MGP_AJ_T0085590.1 MGP_AJ_G0032666.1 mouse_genomes_project 7 104403151 104404117 + MGP_AJ_P0085590 Olfr635 protein_coding protein_coding MGP_AJ_T0005176.1 MGP_AJ_G0004407.1 mouse_genomes_project 7 27320079 27321314 + 1110035H17Rik antisense pseudogene MGP_AJ_T0005177.1 MGP_AJ_G0004407.1 mouse_genomes_project 7 27320079 27321316 + 1110035H17Rik antisense antisense MGP_AJ_T0082443.1 MGP_AJ_G0031856.1 mouse_genomes_project 7 23586244 23594227 - MGP_AJ_P0082443 Ccdc97 protein_coding protein_coding MGP_AJ_T0082444.1 MGP_AJ_G0031856.1 mouse_genomes_project 7 23588073 23591245 - Ccdc97 protein_coding processed_transcript MGP_AJ_T0082445.1 MGP_AJ_G0031856.1 mouse_genomes_project 7 23589272 23594142 - Ccdc97 protein_coding retained_intron MGP_AJ_T0082446.1 MGP_AJ_G0031856.1 mouse_genomes_project 7 23589960 23594184 - MGP_AJ_P0082446 Ccdc97 protein_coding protein_coding MGP_AJ_T0082447.1 MGP_AJ_G0031856.1 mouse_genomes_project 7 23590048 23591533 - Ccdc97 protein_coding retained_intron MGP_AJ_T0082448.1 MGP_AJ_G0031856.1 mouse_genomes_project 7 23591042 23594145 - Ccdc97 protein_coding processed_transcript MGP_AJ_T0082449.1 MGP_AJ_G0031856.1 mouse_genomes_project 7 23591042 23594130 - Ccdc97 protein_coding processed_transcript MGP_AJ_T0082450.1 MGP_AJ_G0031856.1 mouse_genomes_project 7 23591279 23594194 - Ccdc97 protein_coding processed_transcript MGP_AJ_T0082451.1 MGP_AJ_G0031856.1 mouse_genomes_project 7 23592044 23594206 - Ccdc97 protein_coding processed_transcript MGP_AJ_T0082750.1 MGP_AJ_G0031940.1 mouse_genomes_project 7 26958030 26971749 + MGP_AJ_P0082750 Hnrnpl protein_coding protein_coding MGP_AJ_T0082751.1 MGP_AJ_G0031940.1 mouse_genomes_project 7 26958295 26966446 + Hnrnpl protein_coding retained_intron MGP_AJ_T0082752.1 MGP_AJ_G0031940.1 mouse_genomes_project 7 26958297 26971732 + MGP_AJ_P0082752 Hnrnpl protein_coding protein_coding MGP_AJ_T0082753.1 MGP_AJ_G0031940.1 mouse_genomes_project 7 26959007 26964612 + MGP_AJ_P0082753 Hnrnpl protein_coding protein_coding MGP_AJ_T0082754.1 MGP_AJ_G0031940.1 mouse_genomes_project 7 26960377 26971749 + MGP_AJ_P0082754 Hnrnpl protein_coding protein_coding MGP_AJ_T0082755.1 MGP_AJ_G0031940.1 mouse_genomes_project 7 26960424 26971723 + MGP_AJ_P0082755 Hnrnpl protein_coding protein_coding MGP_AJ_T0082756.1 MGP_AJ_G0031940.1 mouse_genomes_project 7 26960427 26966422 + Hnrnpl protein_coding retained_intron MGP_AJ_T0082757.1 MGP_AJ_G0031940.1 mouse_genomes_project 7 26962832 26971732 + MGP_AJ_P0082757 Hnrnpl protein_coding nonsense_mediated_decay MGP_AJ_T0082758.1 MGP_AJ_G0031940.1 mouse_genomes_project 7 26962865 26963935 + Hnrnpl protein_coding retained_intron MGP_AJ_T0082759.1 MGP_AJ_G0031940.1 mouse_genomes_project 7 26964311 26968186 + Hnrnpl protein_coding retained_intron MGP_AJ_T0082760.1 MGP_AJ_G0031940.1 mouse_genomes_project 7 26964592 26970206 + Hnrnpl protein_coding retained_intron MGP_AJ_T0082761.1 MGP_AJ_G0031940.1 mouse_genomes_project 7 26967319 26968198 + Hnrnpl protein_coding retained_intron MGP_AJ_T0082762.1 MGP_AJ_G0031940.1 mouse_genomes_project 7 26970695 26971727 + Hnrnpl protein_coding retained_intron MGP_AJ_T0084109.1 MGP_AJ_G0032267.1 mouse_genomes_project 7 48053641 48054860 - MGP_AJ_P0084109 Mrgprb4 protein_coding protein_coding MGP_AJ_T0083292.1 MGP_AJ_G0032057.1 mouse_genomes_project 7 32787065 32833284 - MGP_AJ_P0083292 Lsm14a protein_coding protein_coding MGP_AJ_T0083293.1 MGP_AJ_G0032057.1 mouse_genomes_project 7 32787082 32796858 - MGP_AJ_P0083293 Lsm14a protein_coding protein_coding MGP_AJ_T0083294.1 MGP_AJ_G0032057.1 mouse_genomes_project 7 32788134 32836912 - MGP_AJ_P0083294 Lsm14a protein_coding nonsense_mediated_decay MGP_AJ_T0083295.1 MGP_AJ_G0032057.1 mouse_genomes_project 7 32788357 32814848 - MGP_AJ_P0083295 Lsm14a protein_coding nonsense_mediated_decay MGP_AJ_T0083296.1 MGP_AJ_G0032057.1 mouse_genomes_project 7 32793215 32796919 - Lsm14a protein_coding retained_intron MGP_AJ_T0083297.1 MGP_AJ_G0032057.1 mouse_genomes_project 7 32796845 32833076 - MGP_AJ_P0083297 Lsm14a protein_coding protein_coding MGP_AJ_T0083298.1 MGP_AJ_G0032057.1 mouse_genomes_project 7 32797176 32832677 - MGP_AJ_P0083298 Lsm14a protein_coding protein_coding MGP_AJ_T0083299.1 MGP_AJ_G0032057.1 mouse_genomes_project 7 32830177 32832758 - Lsm14a protein_coding retained_intron MGP_AJ_T0084019.1 MGP_AJ_G0032238.1 mouse_genomes_project 7 45502260 45503433 - MGP_AJ_P0084019 Kcnj11 protein_coding protein_coding MGP_AJ_T0081623.1 MGP_AJ_G0031591.1 mouse_genomes_project 7 4093026 4099783 - MGP_AJ_P0081623 Zfp954 protein_coding protein_coding MGP_AJ_T0002260.1 MGP_AJ_G0002171.1 mouse_genomes_project 7 75376378 75378005 + TEC TEC MGP_AJ_T0015836.1 MGP_AJ_G0013931.1 mouse_genomes_project 7 56773832 56774093 - processed_pseudogene processed_pseudogene MGP_AJ_T0084947.1 MGP_AJ_G0032457.1 mouse_genomes_project 7 86880080 86887124 + MGP_AJ_P0084947 protein_coding protein_coding MGP_AJ_T0083763.1 MGP_AJ_G0032165.1 mouse_genomes_project 7 44264671 44294329 - MGP_AJ_P0083763 Ap2a1 protein_coding protein_coding MGP_AJ_T0083764.1 MGP_AJ_G0032165.1 mouse_genomes_project 7 44264671 44294329 - MGP_AJ_P0083764 Ap2a1 protein_coding protein_coding MGP_AJ_T0083765.1 MGP_AJ_G0032165.1 mouse_genomes_project 7 44264671 44294329 - MGP_AJ_P0083765 Ap2a1 protein_coding protein_coding MGP_AJ_T0083766.1 MGP_AJ_G0032165.1 mouse_genomes_project 7 44264671 44294329 - MGP_AJ_P0083766 Ap2a1 protein_coding protein_coding MGP_AJ_T0084086.1 MGP_AJ_G0032254.1 mouse_genomes_project 7 46286161 46303084 + MGP_AJ_P0084086 Ldhc protein_coding protein_coding MGP_AJ_T0084087.1 MGP_AJ_G0032254.1 mouse_genomes_project 7 46286280 46300730 + MGP_AJ_P0084087 Ldhc protein_coding protein_coding MGP_AJ_T0084088.1 MGP_AJ_G0032254.1 mouse_genomes_project 7 46286368 46301416 + MGP_AJ_P0084088 Ldhc protein_coding protein_coding MGP_AJ_T0015782.1 MGP_AJ_G0013877.1 mouse_genomes_project 7 32268903 32269662 + processed_pseudogene processed_pseudogene MGP_AJ_T0015812.1 MGP_AJ_G0013907.1 mouse_genomes_project 7 41999486 41999970 + processed_pseudogene processed_pseudogene MGP_AJ_T0083554.1 MGP_AJ_G0032122.1 mouse_genomes_project 7 42818980 42824061 + MGP_AJ_P0083554 Klk14 protein_coding protein_coding MGP_AJ_T0102862.1 MGP_AJ_G0040602.1 mouse_genomes_project 7 85098002 85633614 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0002251.1 MGP_AJ_G0002163.1 mouse_genomes_project 7 73329468 73331510 - TEC TEC MGP_AJ_T0005292.1 MGP_AJ_G0004489.1 mouse_genomes_project 7 128442580 128448067 - Gm44759 antisense antisense MGP_AJ_T0081636.1 MGP_AJ_G0031602.1 mouse_genomes_project 7 7739650 7740547 + MGP_AJ_P0081636 Vmn1r70 protein_coding protein_coding MGP_AJ_T0086591.1 MGP_AJ_G0032971.1 mouse_genomes_project 7 127409680 127415607 - MGP_AJ_P0086591 Il27 protein_coding protein_coding MGP_AJ_T0087430.1 MGP_AJ_G0033138.1 mouse_genomes_project 7 140928948 140939422 - 6430531B16Rik protein_coding retained_intron MGP_AJ_T0087431.1 MGP_AJ_G0033138.1 mouse_genomes_project 7 140928948 140939454 - MGP_AJ_P0087431 6430531B16Rik protein_coding protein_coding MGP_AJ_T0087432.1 MGP_AJ_G0033138.1 mouse_genomes_project 7 140936194 140939422 - MGP_AJ_P0087432 6430531B16Rik protein_coding protein_coding MGP_AJ_T0084562.1 MGP_AJ_G0032362.1 mouse_genomes_project 7 79056180 79118057 + MGP_AJ_P0084562 Acan protein_coding protein_coding MGP_AJ_T0084563.1 MGP_AJ_G0032362.1 mouse_genomes_project 7 79102584 79117585 + MGP_AJ_P0084563 Acan protein_coding protein_coding MGP_AJ_T0099096.1 MGP_AJ_G0037068.1 mouse_genomes_project 7 130503400 130529907 + Gm33248 sense_intronic sense_intronic MGP_AJ_T0098471.1 MGP_AJ_G0036455.1 mouse_genomes_project 7 108814195 108819702 + pseudogene pseudogene MGP_AJ_T0081794.1 MGP_AJ_G0031668.1 mouse_genomes_project 7 13430392 13458157 - MGP_AJ_P0081794 Gltscr1 protein_coding protein_coding MGP_AJ_T0084945.1 MGP_AJ_G0032455.1 mouse_genomes_project 7 86811456 86812464 - MGP_AJ_P0084945 Olfr294 protein_coding protein_coding MGP_AJ_T0086658.1 MGP_AJ_G0032981.1 mouse_genomes_project 7 127607247 127611325 + MGP_AJ_P0086658 Tbx6 protein_coding protein_coding MGP_AJ_T0086659.1 MGP_AJ_G0032981.1 mouse_genomes_project 7 127607247 127611124 + MGP_AJ_P0086659 Tbx6 protein_coding protein_coding MGP_AJ_T0086064.1 MGP_AJ_G0032866.1 mouse_genomes_project 7 115259609 115272392 - MGP_AJ_P0086064 Cyp2r1 protein_coding protein_coding MGP_AJ_T0086065.1 MGP_AJ_G0032866.1 mouse_genomes_project 7 115259665 115272390 - MGP_AJ_P0086065 Cyp2r1 protein_coding nonsense_mediated_decay MGP_AJ_T0086066.1 MGP_AJ_G0032866.1 mouse_genomes_project 7 115259676 115272382 - MGP_AJ_P0086066 Cyp2r1 protein_coding protein_coding MGP_AJ_T0086067.1 MGP_AJ_G0032866.1 mouse_genomes_project 7 115259690 115264177 - Cyp2r1 protein_coding processed_transcript MGP_AJ_T0086068.1 MGP_AJ_G0032866.1 mouse_genomes_project 7 115259690 115264173 - MGP_AJ_P0086068 Cyp2r1 protein_coding nonsense_mediated_decay MGP_AJ_T0086069.1 MGP_AJ_G0032866.1 mouse_genomes_project 7 115259692 115272382 - MGP_AJ_P0086069 Cyp2r1 protein_coding nonsense_mediated_decay MGP_AJ_T0084685.1 MGP_AJ_G0032388.1 mouse_genomes_project 7 80336444 80364225 - Rccd1 protein_coding retained_intron MGP_AJ_T0084700.1 MGP_AJ_G0032388.1 mouse_genomes_project 7 80358724 80368543 - MGP_AJ_P0084700 Rccd1 protein_coding protein_coding MGP_AJ_T0084701.1 MGP_AJ_G0032388.1 mouse_genomes_project 7 80359664 80368244 - Rccd1 protein_coding retained_intron MGP_AJ_T0084702.1 MGP_AJ_G0032388.1 mouse_genomes_project 7 80359664 80368563 - MGP_AJ_P0084702 Rccd1 protein_coding protein_coding MGP_AJ_T0084703.1 MGP_AJ_G0032388.1 mouse_genomes_project 7 80359711 80368573 - Rccd1 protein_coding retained_intron MGP_AJ_T0084704.1 MGP_AJ_G0032388.1 mouse_genomes_project 7 80359713 80363332 - Rccd1 protein_coding retained_intron MGP_AJ_T0084705.1 MGP_AJ_G0032388.1 mouse_genomes_project 7 80365042 80368239 - MGP_AJ_P0084705 Rccd1 protein_coding protein_coding MGP_AJ_T0084706.1 MGP_AJ_G0032388.1 mouse_genomes_project 7 80365354 80368272 - Rccd1 protein_coding retained_intron MGP_AJ_T0084707.1 MGP_AJ_G0032388.1 mouse_genomes_project 7 80366740 80368253 - Rccd1 protein_coding retained_intron MGP_AJ_T0084708.1 MGP_AJ_G0032388.1 mouse_genomes_project 7 80367887 80368520 - Rccd1 protein_coding processed_transcript MGP_AJ_T0085550.1 MGP_AJ_G0032629.1 mouse_genomes_project 7 103739793 103740741 + MGP_AJ_P0085550 Olfr599 protein_coding protein_coding MGP_AJ_T0082474.1 MGP_AJ_G0031864.1 mouse_genomes_project 7 24184563 24185508 + MGP_AJ_P0082474 Vmn1r184 protein_coding protein_coding MGP_AJ_T0081568.1 MGP_AJ_G0031569.1 mouse_genomes_project 7 3148805 3162129 + MGP_AJ_P0081568 Zfp444 protein_coding protein_coding MGP_AJ_T0081569.1 MGP_AJ_G0031569.1 mouse_genomes_project 7 3149061 3168592 + MGP_AJ_P0081569 Zfp444 protein_coding protein_coding MGP_AJ_T0081570.1 MGP_AJ_G0031569.1 mouse_genomes_project 7 3149081 3169900 + MGP_AJ_P0081570 Zfp444 protein_coding protein_coding MGP_AJ_T0081571.1 MGP_AJ_G0031569.1 mouse_genomes_project 7 3149092 3168591 + MGP_AJ_P0081571 Zfp444 protein_coding protein_coding MGP_AJ_T0081572.1 MGP_AJ_G0031569.1 mouse_genomes_project 7 3151304 3162001 + MGP_AJ_P0081572 Zfp444 protein_coding protein_coding MGP_AJ_T0081573.1 MGP_AJ_G0031569.1 mouse_genomes_project 7 3151477 3162609 + Zfp444 protein_coding processed_transcript MGP_AJ_T0081574.1 MGP_AJ_G0031569.1 mouse_genomes_project 7 3151532 3168016 + MGP_AJ_P0081574 Zfp444 protein_coding protein_coding MGP_AJ_T0081575.1 MGP_AJ_G0031569.1 mouse_genomes_project 7 3159633 3166328 + MGP_AJ_P0081575 Zfp444 protein_coding protein_coding MGP_AJ_T0081576.1 MGP_AJ_G0031569.1 mouse_genomes_project 7 3161753 3166403 + MGP_AJ_P0081576 Zfp444 protein_coding protein_coding MGP_AJ_T0081477.1 MGP_AJ_G0031531.1 mouse_genomes_project 7 1676017 1683970 + MGP_AJ_P0081477 Suv420h2 protein_coding protein_coding MGP_AJ_T0081478.1 MGP_AJ_G0031531.1 mouse_genomes_project 7 1676055 1677991 + Suv420h2 protein_coding retained_intron MGP_AJ_T0081479.1 MGP_AJ_G0031531.1 mouse_genomes_project 7 1676058 1678956 + MGP_AJ_P0081479 Suv420h2 protein_coding protein_coding MGP_AJ_T0081480.1 MGP_AJ_G0031531.1 mouse_genomes_project 7 1676069 1683970 + MGP_AJ_P0081480 Suv420h2 protein_coding protein_coding MGP_AJ_T0081481.1 MGP_AJ_G0031531.1 mouse_genomes_project 7 1676087 1683970 + MGP_AJ_P0081481 Suv420h2 protein_coding protein_coding MGP_AJ_T0081482.1 MGP_AJ_G0031531.1 mouse_genomes_project 7 1677537 1678440 + Suv420h2 protein_coding retained_intron MGP_AJ_T0081483.1 MGP_AJ_G0031531.1 mouse_genomes_project 7 1677752 1683354 + MGP_AJ_P0081483 Suv420h2 protein_coding nonsense_mediated_decay MGP_AJ_T0081484.1 MGP_AJ_G0031531.1 mouse_genomes_project 7 1678226 1682364 + Suv420h2 protein_coding retained_intron MGP_AJ_T0081485.1 MGP_AJ_G0031531.1 mouse_genomes_project 7 1678356 1679383 + Suv420h2 protein_coding retained_intron MGP_AJ_T0081486.1 MGP_AJ_G0031531.1 mouse_genomes_project 7 1678559 1679507 + Suv420h2 protein_coding retained_intron MGP_AJ_T0081487.1 MGP_AJ_G0031531.1 mouse_genomes_project 7 1678646 1682577 + Suv420h2 protein_coding retained_intron MGP_AJ_T0081488.1 MGP_AJ_G0031531.1 mouse_genomes_project 7 1682263 1683052 + MGP_AJ_P0081488 Suv420h2 protein_coding protein_coding MGP_AJ_T0086539.1 MGP_AJ_G0032963.1 mouse_genomes_project 7 127265604 127282848 - MGP_AJ_P0086539 Atp2a1 protein_coding protein_coding MGP_AJ_T0086540.1 MGP_AJ_G0032963.1 mouse_genomes_project 7 127265606 127267392 - MGP_AJ_P0086540 Atp2a1 protein_coding protein_coding MGP_AJ_T0086541.1 MGP_AJ_G0032963.1 mouse_genomes_project 7 127265847 127283706 - MGP_AJ_P0086541 Atp2a1 protein_coding unknown_likely_coding MGP_AJ_T0082253.1 MGP_AJ_G0031813.1 mouse_genomes_project 7 22349438 22379235 + MGP_AJ_P0082253 Xrcc1 protein_coding protein_coding MGP_AJ_T0082254.1 MGP_AJ_G0031813.1 mouse_genomes_project 7 22350299 22379238 + MGP_AJ_P0082254 Xrcc1 protein_coding protein_coding MGP_AJ_T0082255.1 MGP_AJ_G0031813.1 mouse_genomes_project 7 22350347 22363841 + Xrcc1 protein_coding retained_intron MGP_AJ_T0082256.1 MGP_AJ_G0031813.1 mouse_genomes_project 7 22350350 22355408 + Xrcc1 protein_coding processed_transcript MGP_AJ_T0082257.1 MGP_AJ_G0031813.1 mouse_genomes_project 7 22350434 22351691 + Xrcc1 protein_coding retained_intron MGP_AJ_T0082258.1 MGP_AJ_G0031813.1 mouse_genomes_project 7 22350482 22370096 + Xrcc1 protein_coding retained_intron MGP_AJ_T0082259.1 MGP_AJ_G0031813.1 mouse_genomes_project 7 22368725 22370697 + Xrcc1 protein_coding retained_intron MGP_AJ_T0082260.1 MGP_AJ_G0031813.1 mouse_genomes_project 7 22370518 22376492 + Xrcc1 protein_coding retained_intron MGP_AJ_T0082261.1 MGP_AJ_G0031813.1 mouse_genomes_project 7 22372858 22376510 + Xrcc1 protein_coding retained_intron MGP_AJ_T0082262.1 MGP_AJ_G0031813.1 mouse_genomes_project 7 22375656 22376726 + Xrcc1 protein_coding retained_intron MGP_AJ_T0082263.1 MGP_AJ_G0031813.1 mouse_genomes_project 7 22376329 22379240 + Xrcc1 protein_coding processed_transcript MGP_AJ_T0082264.1 MGP_AJ_G0031813.1 mouse_genomes_project 7 22377513 22379234 + Xrcc1 protein_coding retained_intron MGP_AJ_T0082265.1 MGP_AJ_G0031813.1 mouse_genomes_project 7 22378025 22379234 + Xrcc1 protein_coding processed_transcript MGP_AJ_T0082921.1 MGP_AJ_G0031979.1 mouse_genomes_project 7 28369492 28377897 - MGP_AJ_P0082921 Zfp146 protein_coding protein_coding MGP_AJ_T0082922.1 MGP_AJ_G0031979.1 mouse_genomes_project 7 28370943 28371583 - Zfp146 protein_coding processed_transcript MGP_AJ_T0005251.1 MGP_AJ_G0004460.1 mouse_genomes_project 7 96550645 96553127 - Gm15412 antisense antisense MGP_AJ_T0087383.1 MGP_AJ_G0033128.1 mouse_genomes_project 7 140026679 140043970 + MGP_AJ_P0087383 Dpysl4 protein_coding protein_coding MGP_AJ_T0087384.1 MGP_AJ_G0033128.1 mouse_genomes_project 7 140026680 140035144 + Dpysl4 protein_coding processed_transcript MGP_AJ_T0087385.1 MGP_AJ_G0033128.1 mouse_genomes_project 7 140026705 140043061 + Dpysl4 protein_coding retained_intron MGP_AJ_T0087386.1 MGP_AJ_G0033128.1 mouse_genomes_project 7 140026706 140043049 + Dpysl4 protein_coding retained_intron MGP_AJ_T0087387.1 MGP_AJ_G0033128.1 mouse_genomes_project 7 140029043 140035110 + MGP_AJ_P0087387 Dpysl4 protein_coding protein_coding MGP_AJ_T0087388.1 MGP_AJ_G0033128.1 mouse_genomes_project 7 140029925 140043043 + MGP_AJ_P0087388 Dpysl4 protein_coding protein_coding MGP_AJ_T0082422.1 MGP_AJ_G0031852.1 mouse_genomes_project 7 23530418 23539287 + MGP_AJ_P0082422 Exosc5 protein_coding protein_coding MGP_AJ_T0082423.1 MGP_AJ_G0031852.1 mouse_genomes_project 7 23530445 23542617 + MGP_AJ_P0082423 Exosc5 protein_coding protein_coding MGP_AJ_T0082424.1 MGP_AJ_G0031852.1 mouse_genomes_project 7 23530466 23539287 + Exosc5 protein_coding retained_intron MGP_AJ_T0082425.1 MGP_AJ_G0031852.1 mouse_genomes_project 7 23530466 23537561 + MGP_AJ_P0082425 Exosc5 protein_coding nonsense_mediated_decay MGP_AJ_T0082426.1 MGP_AJ_G0031852.1 mouse_genomes_project 7 23530472 23535656 + MGP_AJ_P0082426 Exosc5 protein_coding nonsense_mediated_decay MGP_AJ_T0082427.1 MGP_AJ_G0031852.1 mouse_genomes_project 7 23535641 23538029 + Exosc5 protein_coding retained_intron MGP_AJ_T0082049.1 MGP_AJ_G0031746.1 mouse_genomes_project 7 16945671 16952993 - MGP_AJ_P0082049 Fosb protein_coding protein_coding MGP_AJ_T0005194.1 MGP_AJ_G0004421.1 mouse_genomes_project 7 33088851 33096071 + Gm12781 antisense antisense MGP_AJ_T0085814.1 MGP_AJ_G0032773.1 mouse_genomes_project 7 107737503 107738607 + MGP_AJ_P0085814 Olfr716 protein_coding protein_coding MGP_AJ_T0005239.1 MGP_AJ_G0004453.1 mouse_genomes_project 7 80686930 80695256 + Gm15880 antisense antisense MGP_AJ_T0082247.1 MGP_AJ_G0031810.1 mouse_genomes_project 7 22310269 22318682 + MGP_AJ_P0082247 Zfp428 protein_coding protein_coding MGP_AJ_T0082248.1 MGP_AJ_G0031810.1 mouse_genomes_project 7 22310333 22318945 + MGP_AJ_P0082248 Zfp428 protein_coding protein_coding MGP_AJ_T0082249.1 MGP_AJ_G0031810.1 mouse_genomes_project 7 22310362 22318366 + MGP_AJ_P0082249 Zfp428 protein_coding protein_coding MGP_AJ_T0082250.1 MGP_AJ_G0031810.1 mouse_genomes_project 7 22310393 22318943 + MGP_AJ_P0082250 Zfp428 protein_coding protein_coding MGP_AJ_T0015758.1 MGP_AJ_G0013853.1 mouse_genomes_project 7 25073584 25073942 + processed_pseudogene processed_pseudogene MGP_AJ_T0100192.1 MGP_AJ_G0038158.1 mouse_genomes_project 7 140134444 140134543 - Gm27975 snRNA snRNA MGP_AJ_T0002321.1 MGP_AJ_G0002232.1 mouse_genomes_project 7 144280294 144284214 + TEC TEC MGP_AJ_T0086660.1 MGP_AJ_G0032982.1 mouse_genomes_project 7 127611630 127618268 - MGP_AJ_P0086660 Ppp4c protein_coding protein_coding MGP_AJ_T0086661.1 MGP_AJ_G0032982.1 mouse_genomes_project 7 127611632 127618112 - MGP_AJ_P0086661 Ppp4c protein_coding protein_coding MGP_AJ_T0086662.1 MGP_AJ_G0032982.1 mouse_genomes_project 7 127611924 127614176 - MGP_AJ_P0086662 Ppp4c protein_coding protein_coding MGP_AJ_T0086663.1 MGP_AJ_G0032982.1 mouse_genomes_project 7 127611994 127613105 - MGP_AJ_P0086663 Ppp4c protein_coding protein_coding MGP_AJ_T0086664.1 MGP_AJ_G0032982.1 mouse_genomes_project 7 127612054 127618265 - MGP_AJ_P0086664 Ppp4c protein_coding nonsense_mediated_decay MGP_AJ_T0086665.1 MGP_AJ_G0032982.1 mouse_genomes_project 7 127612985 127614810 - MGP_AJ_P0086665 Ppp4c protein_coding protein_coding MGP_AJ_T0086666.1 MGP_AJ_G0032982.1 mouse_genomes_project 7 127613233 127617919 - MGP_AJ_P0086666 Ppp4c protein_coding nonsense_mediated_decay MGP_AJ_T0086667.1 MGP_AJ_G0032982.1 mouse_genomes_project 7 127613336 127614783 - Ppp4c protein_coding retained_intron MGP_AJ_T0086668.1 MGP_AJ_G0032982.1 mouse_genomes_project 7 127613429 127618238 - Ppp4c protein_coding retained_intron MGP_AJ_T0086669.1 MGP_AJ_G0032982.1 mouse_genomes_project 7 127616278 127618268 - Ppp4c protein_coding retained_intron MGP_AJ_T0086670.1 MGP_AJ_G0032982.1 mouse_genomes_project 7 127616302 127618254 - Ppp4c protein_coding retained_intron MGP_AJ_T0101425.1 MGP_AJ_G0039391.1 mouse_genomes_project 7 67412176 67412313 - Gm23233 snoRNA snoRNA MGP_AJ_T0008826.1 MGP_AJ_G0007126.1 mouse_genomes_project 7 22994320 22998491 + D930028M14Rik lincRNA lincRNA MGP_AJ_T0008827.1 MGP_AJ_G0007126.1 mouse_genomes_project 7 22996932 22998083 + D930028M14Rik lincRNA lincRNA MGP_AJ_T0082986.1 MGP_AJ_G0031991.1 mouse_genomes_project 7 28531076 28533559 - MGP_AJ_P0082986 Sdhaf1 protein_coding protein_coding MGP_AJ_T0083167.1 MGP_AJ_G0032032.1 mouse_genomes_project 7 29217757 29220278 + Fam187b protein_coding retained_intron MGP_AJ_T0083168.1 MGP_AJ_G0032032.1 mouse_genomes_project 7 29217771 29233711 + MGP_AJ_P0083168 Fam187b protein_coding protein_coding MGP_AJ_T0083169.1 MGP_AJ_G0032032.1 mouse_genomes_project 7 29221002 29233717 + MGP_AJ_P0083169 Fam187b protein_coding protein_coding MGP_AJ_T0083170.1 MGP_AJ_G0032032.1 mouse_genomes_project 7 29225856 29233453 + MGP_AJ_P0083170 Fam187b protein_coding protein_coding MGP_AJ_T0083851.1 MGP_AJ_G0032196.1 mouse_genomes_project 7 44762155 44781237 - MGP_AJ_P0083851 Snrnp70 protein_coding protein_coding MGP_AJ_T0083852.1 MGP_AJ_G0032196.1 mouse_genomes_project 7 44762161 44769588 - MGP_AJ_P0083852 Snrnp70 protein_coding protein_coding MGP_AJ_T0083853.1 MGP_AJ_G0032196.1 mouse_genomes_project 7 44762164 44781153 - Snrnp70 protein_coding retained_intron MGP_AJ_T0083854.1 MGP_AJ_G0032196.1 mouse_genomes_project 7 44762165 44781187 - Snrnp70 protein_coding retained_intron MGP_AJ_T0083855.1 MGP_AJ_G0032196.1 mouse_genomes_project 7 44762848 44777813 - MGP_AJ_P0083855 Snrnp70 protein_coding nonsense_mediated_decay MGP_AJ_T0083856.1 MGP_AJ_G0032196.1 mouse_genomes_project 7 44767055 44769977 - Snrnp70 protein_coding retained_intron MGP_AJ_T0083857.1 MGP_AJ_G0032196.1 mouse_genomes_project 7 44769242 44780291 - Snrnp70 protein_coding retained_intron MGP_AJ_T0083858.1 MGP_AJ_G0032196.1 mouse_genomes_project 7 44769410 44773461 - Snrnp70 protein_coding retained_intron MGP_AJ_T0083859.1 MGP_AJ_G0032196.1 mouse_genomes_project 7 44769460 44780668 - MGP_AJ_P0083859 Snrnp70 protein_coding nonsense_mediated_decay MGP_AJ_T0083860.1 MGP_AJ_G0032196.1 mouse_genomes_project 7 44769475 44780690 - MGP_AJ_P0083860 Snrnp70 protein_coding protein_coding MGP_AJ_T0083861.1 MGP_AJ_G0032196.1 mouse_genomes_project 7 44772639 44780211 - Snrnp70 protein_coding retained_intron MGP_AJ_T0083862.1 MGP_AJ_G0032196.1 mouse_genomes_project 7 44773080 44781204 - MGP_AJ_P0083862 Snrnp70 protein_coding protein_coding MGP_AJ_T0083863.1 MGP_AJ_G0032196.1 mouse_genomes_project 7 44773124 44778270 - Snrnp70 protein_coding processed_transcript MGP_AJ_T0083864.1 MGP_AJ_G0032196.1 mouse_genomes_project 7 44776678 44778376 - Snrnp70 protein_coding retained_intron MGP_AJ_T0083865.1 MGP_AJ_G0032196.1 mouse_genomes_project 7 44777315 44781052 - Snrnp70 protein_coding retained_intron MGP_AJ_T0015854.1 MGP_AJ_G0013949.1 mouse_genomes_project 7 72865607 72866607 - processed_pseudogene processed_pseudogene MGP_AJ_T0083117.1 MGP_AJ_G0032022.1 mouse_genomes_project 7 28991157 28993025 + Krtdap protein_coding retained_intron MGP_AJ_T0083118.1 MGP_AJ_G0032022.1 mouse_genomes_project 7 28991166 28994329 + MGP_AJ_P0083118 Krtdap protein_coding protein_coding MGP_AJ_T0083119.1 MGP_AJ_G0032022.1 mouse_genomes_project 7 28991166 28994345 + MGP_AJ_P0083119 Krtdap protein_coding protein_coding MGP_AJ_T0083120.1 MGP_AJ_G0032022.1 mouse_genomes_project 7 28991166 28994351 + MGP_AJ_P0083120 Krtdap protein_coding protein_coding MGP_AJ_T0083121.1 MGP_AJ_G0032022.1 mouse_genomes_project 7 28991166 28994359 + MGP_AJ_P0083121 Krtdap protein_coding protein_coding MGP_AJ_T0083122.1 MGP_AJ_G0032022.1 mouse_genomes_project 7 28991166 28994347 + MGP_AJ_P0083122 Krtdap protein_coding protein_coding MGP_AJ_T0083123.1 MGP_AJ_G0032022.1 mouse_genomes_project 7 28993063 28994347 + Krtdap protein_coding retained_intron MGP_AJ_T0083124.1 MGP_AJ_G0032022.1 mouse_genomes_project 7 28993115 28994345 + Krtdap protein_coding retained_intron MGP_AJ_T0083125.1 MGP_AJ_G0032022.1 mouse_genomes_project 7 28993748 28994347 + Krtdap protein_coding retained_intron MGP_AJ_T0008895.1 MGP_AJ_G0007181.1 mouse_genomes_project 7 65642980 65646148 + 1810008I18Rik lincRNA lincRNA MGP_AJ_T0008896.1 MGP_AJ_G0007181.1 mouse_genomes_project 7 65643900 65646311 + 1810008I18Rik lincRNA lincRNA MGP_AJ_T0002274.1 MGP_AJ_G0002185.1 mouse_genomes_project 7 79519541 79520580 + TEC TEC MGP_AJ_T0002253.1 MGP_AJ_G0002165.1 mouse_genomes_project 7 73405608 73407068 - TEC TEC MGP_AJ_T0085552.1 MGP_AJ_G0032631.1 mouse_genomes_project 7 103759807 103760752 - MGP_AJ_P0085552 protein_coding protein_coding MGP_AJ_T0086475.1 MGP_AJ_G0032954.1 mouse_genomes_project 7 126520640 126530552 + D430042O09Rik protein_coding retained_intron MGP_AJ_T0086476.1 MGP_AJ_G0032954.1 mouse_genomes_project 7 126520665 126690523 + MGP_AJ_P0086476 D430042O09Rik protein_coding protein_coding MGP_AJ_T0086477.1 MGP_AJ_G0032954.1 mouse_genomes_project 7 126520714 126574895 + MGP_AJ_P0086477 D430042O09Rik protein_coding protein_coding MGP_AJ_T0086478.1 MGP_AJ_G0032954.1 mouse_genomes_project 7 126599717 126676574 + D430042O09Rik protein_coding processed_transcript MGP_AJ_T0086479.1 MGP_AJ_G0032954.1 mouse_genomes_project 7 126644244 126690516 + D430042O09Rik protein_coding retained_intron MGP_AJ_T0086480.1 MGP_AJ_G0032954.1 mouse_genomes_project 7 126675259 126687969 + MGP_AJ_P0086480 D430042O09Rik protein_coding protein_coding MGP_AJ_T0086481.1 MGP_AJ_G0032954.1 mouse_genomes_project 7 126679848 126682553 + D430042O09Rik protein_coding retained_intron MGP_AJ_T0086220.1 MGP_AJ_G0032892.1 mouse_genomes_project 7 120172729 120189216 - MGP_AJ_P0086220 Gp2 protein_coding protein_coding MGP_AJ_T0083511.1 MGP_AJ_G0032109.1 mouse_genomes_project 7 42567714 42570267 + MGP_AJ_P0083511 Cldnd2 protein_coding protein_coding MGP_AJ_T0083512.1 MGP_AJ_G0032109.1 mouse_genomes_project 7 42568508 42570232 + MGP_AJ_P0083512 Cldnd2 protein_coding protein_coding MGP_AJ_T0082740.1 MGP_AJ_G0031938.1 mouse_genomes_project 7 26915294 26937216 + Sirt2 protein_coding processed_transcript MGP_AJ_T0082741.1 MGP_AJ_G0031938.1 mouse_genomes_project 7 26915311 26937221 + MGP_AJ_P0082741 Sirt2 protein_coding protein_coding MGP_AJ_T0082742.1 MGP_AJ_G0031938.1 mouse_genomes_project 7 26915326 26937216 + MGP_AJ_P0082742 Sirt2 protein_coding protein_coding MGP_AJ_T0082743.1 MGP_AJ_G0031938.1 mouse_genomes_project 7 26915813 26937216 + Sirt2 protein_coding processed_transcript MGP_AJ_T0082744.1 MGP_AJ_G0031938.1 mouse_genomes_project 7 26925405 26926240 + Sirt2 protein_coding retained_intron MGP_AJ_T0082745.1 MGP_AJ_G0031938.1 mouse_genomes_project 7 26925555 26931895 + Sirt2 protein_coding retained_intron MGP_AJ_T0082746.1 MGP_AJ_G0031938.1 mouse_genomes_project 7 26933181 26936323 + Sirt2 protein_coding processed_transcript MGP_AJ_T0082747.1 MGP_AJ_G0031938.1 mouse_genomes_project 7 26933938 26936182 + Sirt2 protein_coding retained_intron MGP_AJ_T0082748.1 MGP_AJ_G0031938.1 mouse_genomes_project 7 26934112 26936816 + Sirt2 protein_coding retained_intron MGP_AJ_T0008870.1 MGP_AJ_G0007161.1 mouse_genomes_project 7 39590021 39599264 + Gm28307 lincRNA lincRNA MGP_AJ_T0086870.1 MGP_AJ_G0033023.1 mouse_genomes_project 7 128330211 128341079 + MGP_AJ_P0086870 protein_coding protein_coding MGP_AJ_T0086871.1 MGP_AJ_G0033023.1 mouse_genomes_project 7 128331027 128334228 + protein_coding processed_transcript MGP_AJ_T0086872.1 MGP_AJ_G0033023.1 mouse_genomes_project 7 128336226 128342310 + MGP_AJ_P0086872 protein_coding protein_coding MGP_AJ_T0086873.1 MGP_AJ_G0033023.1 mouse_genomes_project 7 128336413 128340343 + protein_coding retained_intron MGP_AJ_T0086874.1 MGP_AJ_G0033023.1 mouse_genomes_project 7 128336646 128340525 + MGP_AJ_P0086874 protein_coding protein_coding MGP_AJ_T0086875.1 MGP_AJ_G0033023.1 mouse_genomes_project 7 128336652 128340935 + MGP_AJ_P0086875 protein_coding protein_coding MGP_AJ_T0086876.1 MGP_AJ_G0033023.1 mouse_genomes_project 7 128337853 128342508 + protein_coding retained_intron MGP_AJ_T0086877.1 MGP_AJ_G0033023.1 mouse_genomes_project 7 128338067 128338958 + protein_coding retained_intron MGP_AJ_T0015756.1 MGP_AJ_G0013851.1 mouse_genomes_project 7 24791215 24829858 + processed_pseudogene processed_pseudogene MGP_AJ_T0084309.1 MGP_AJ_G0032314.1 mouse_genomes_project 7 64157702 64173737 + Mtmr10 protein_coding retained_intron MGP_AJ_T0084310.1 MGP_AJ_G0032314.1 mouse_genomes_project 7 64157719 64211350 + MGP_AJ_P0084310 Mtmr10 protein_coding protein_coding MGP_AJ_T0084311.1 MGP_AJ_G0032314.1 mouse_genomes_project 7 64157831 64211356 + MGP_AJ_P0084311 Mtmr10 protein_coding unknown_likely_coding MGP_AJ_T0084312.1 MGP_AJ_G0032314.1 mouse_genomes_project 7 64157831 64208573 + MGP_AJ_P0084312 Mtmr10 protein_coding nonsense_mediated_decay MGP_AJ_T0084313.1 MGP_AJ_G0032314.1 mouse_genomes_project 7 64171197 64191775 + MGP_AJ_P0084313 Mtmr10 protein_coding nonsense_mediated_decay MGP_AJ_T0084670.1 MGP_AJ_G0032384.1 mouse_genomes_project 7 80274607 80286053 + MGP_AJ_P0084670 Gdpgp1 protein_coding protein_coding MGP_AJ_T0085654.1 MGP_AJ_G0032702.1 mouse_genomes_project 7 105216381 105220539 + MGP_AJ_P0085654 protein_coding protein_coding MGP_AJ_T0085198.1 MGP_AJ_G0032520.1 mouse_genomes_project 7 99462877 99482355 - MGP_AJ_P0085198 Mogat2 protein_coding protein_coding MGP_AJ_T0085199.1 MGP_AJ_G0032520.1 mouse_genomes_project 7 99470381 99482330 - Mogat2 protein_coding processed_transcript MGP_AJ_T0084104.1 MGP_AJ_G0032263.1 mouse_genomes_project 7 46829909 47076940 - MGP_AJ_P0084104 protein_coding protein_coding MGP_AJ_T0100159.1 MGP_AJ_G0038125.1 mouse_genomes_project 7 77895438 77895619 - Gm23239 snRNA snRNA MGP_AJ_T0081653.1 MGP_AJ_G0031616.1 mouse_genomes_project 7 9562532 9563528 - MGP_AJ_P0081653 Vmn1r83 protein_coding protein_coding MGP_AJ_T0085857.1 MGP_AJ_G0032809.1 mouse_genomes_project 7 109263597 109264530 + MGP_AJ_P0085857 Olfr508 protein_coding protein_coding MGP_AJ_T0102893.1 MGP_AJ_G0040633.1 mouse_genomes_project 7 103547908 103548761 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0082318.1 MGP_AJ_G0031829.1 mouse_genomes_project 7 22808318 22811313 - MGP_AJ_P0082318 Rabac1 protein_coding protein_coding MGP_AJ_T0082319.1 MGP_AJ_G0031829.1 mouse_genomes_project 7 22808319 22810543 - Rabac1 protein_coding retained_intron MGP_AJ_T0082320.1 MGP_AJ_G0031829.1 mouse_genomes_project 7 22808327 22810585 - Rabac1 protein_coding processed_transcript MGP_AJ_T0082321.1 MGP_AJ_G0031829.1 mouse_genomes_project 7 22808327 22811197 - MGP_AJ_P0082321 Rabac1 protein_coding protein_coding MGP_AJ_T0082322.1 MGP_AJ_G0031829.1 mouse_genomes_project 7 22808328 22810786 - Rabac1 protein_coding processed_transcript MGP_AJ_T0082323.1 MGP_AJ_G0031829.1 mouse_genomes_project 7 22810065 22811111 - Rabac1 protein_coding retained_intron MGP_AJ_T0015797.1 MGP_AJ_G0013892.1 mouse_genomes_project 7 38440485 38441028 - processed_pseudogene processed_pseudogene MGP_AJ_T0002319.1 MGP_AJ_G0002230.1 mouse_genomes_project 7 144106611 144106846 + TEC TEC MGP_AJ_T0082098.1 MGP_AJ_G0031760.1 mouse_genomes_project 7 17211629 17220354 - MGP_AJ_P0082098 Gemin7 protein_coding protein_coding MGP_AJ_T0082099.1 MGP_AJ_G0031760.1 mouse_genomes_project 7 17211632 17219874 - MGP_AJ_P0082099 Gemin7 protein_coding protein_coding MGP_AJ_T0082100.1 MGP_AJ_G0031760.1 mouse_genomes_project 7 17211770 17219499 - MGP_AJ_P0082100 Gemin7 protein_coding protein_coding MGP_AJ_T0082101.1 MGP_AJ_G0031760.1 mouse_genomes_project 7 17211802 17219620 - MGP_AJ_P0082101 Gemin7 protein_coding protein_coding MGP_AJ_T0082102.1 MGP_AJ_G0031760.1 mouse_genomes_project 7 17211929 17219916 - MGP_AJ_P0082102 Gemin7 protein_coding protein_coding MGP_AJ_T0082103.1 MGP_AJ_G0031760.1 mouse_genomes_project 7 17212107 17219705 - MGP_AJ_P0082103 Gemin7 protein_coding protein_coding MGP_AJ_T0018356.1 MGP_AJ_G0015646.1 mouse_genomes_project 7 44958353 44966727 - processed_transcript processed_transcript MGP_AJ_T0018357.1 MGP_AJ_G0015646.1 mouse_genomes_project 7 44958493 44966727 - processed_transcript processed_transcript MGP_AJ_T0018358.1 MGP_AJ_G0015646.1 mouse_genomes_project 7 44958659 44966416 - processed_transcript retained_intron MGP_AJ_T0018359.1 MGP_AJ_G0015646.1 mouse_genomes_project 7 44958682 44966897 - processed_transcript processed_transcript MGP_AJ_T0018360.1 MGP_AJ_G0015646.1 mouse_genomes_project 7 44958778 44966727 - processed_transcript processed_transcript MGP_AJ_T0018361.1 MGP_AJ_G0015646.1 mouse_genomes_project 7 44959671 44966743 - processed_transcript retained_intron MGP_AJ_T0018362.1 MGP_AJ_G0015646.1 mouse_genomes_project 7 44960697 44961588 - processed_transcript processed_transcript MGP_AJ_T0018363.1 MGP_AJ_G0015646.1 mouse_genomes_project 7 44960724 44966764 - processed_transcript processed_transcript MGP_AJ_T0018364.1 MGP_AJ_G0015646.1 mouse_genomes_project 7 44965654 44966726 - processed_transcript retained_intron MGP_AJ_T0085849.1 MGP_AJ_G0032801.1 mouse_genomes_project 7 109025959 109027062 + MGP_AJ_P0085849 protein_coding protein_coding MGP_AJ_T0005203.1 MGP_AJ_G0004428.1 mouse_genomes_project 7 39526160 39614399 - antisense antisense MGP_AJ_T0005204.1 MGP_AJ_G0004428.1 mouse_genomes_project 7 39560000 39611790 - antisense antisense MGP_AJ_T0005205.1 MGP_AJ_G0004428.1 mouse_genomes_project 7 39562111 39588803 - antisense antisense MGP_AJ_T0005206.1 MGP_AJ_G0004428.1 mouse_genomes_project 7 39588985 39612068 - antisense antisense MGP_AJ_T0008976.1 MGP_AJ_G0007235.1 mouse_genomes_project 7 94243322 94554566 + lincRNA lincRNA MGP_AJ_T0008977.1 MGP_AJ_G0007235.1 mouse_genomes_project 7 94243383 94927539 + lincRNA lincRNA MGP_AJ_T0085191.1 MGP_AJ_G0032517.1 mouse_genomes_project 7 99078666 99090064 + MGP_AJ_P0085191 Wnt11 protein_coding protein_coding MGP_AJ_T0085192.1 MGP_AJ_G0032517.1 mouse_genomes_project 7 99078666 99097282 + MGP_AJ_P0085192 Wnt11 protein_coding nonsense_mediated_decay MGP_AJ_T0085193.1 MGP_AJ_G0032517.1 mouse_genomes_project 7 99078685 99098666 + MGP_AJ_P0085193 Wnt11 protein_coding protein_coding MGP_AJ_T0085194.1 MGP_AJ_G0032517.1 mouse_genomes_project 7 99082391 99097222 + MGP_AJ_P0085194 Wnt11 protein_coding protein_coding MGP_AJ_T0085195.1 MGP_AJ_G0032517.1 mouse_genomes_project 7 99082444 99097042 + MGP_AJ_P0085195 Wnt11 protein_coding nonsense_mediated_decay MGP_AJ_T0015766.1 MGP_AJ_G0013861.1 mouse_genomes_project 7 30835186 30836176 + processed_pseudogene processed_pseudogene MGP_AJ_T0087650.1 MGP_AJ_G0033208.1 mouse_genomes_project 7 142385547 142396283 + MGP_AJ_P0087650 Taldo1 protein_coding protein_coding MGP_AJ_T0087651.1 MGP_AJ_G0033208.1 mouse_genomes_project 7 142385591 142392438 + Taldo1 protein_coding retained_intron MGP_AJ_T0087652.1 MGP_AJ_G0033208.1 mouse_genomes_project 7 142393468 142395521 + Taldo1 protein_coding retained_intron MGP_AJ_T0082456.1 MGP_AJ_G0031858.1 mouse_genomes_project 7 23632679 23666348 - MGP_AJ_P0082456 Axl protein_coding protein_coding MGP_AJ_T0082457.1 MGP_AJ_G0031858.1 mouse_genomes_project 7 23633036 23666366 - MGP_AJ_P0082457 Axl protein_coding protein_coding MGP_AJ_T0082458.1 MGP_AJ_G0031858.1 mouse_genomes_project 7 23636102 23639489 - Axl protein_coding retained_intron MGP_AJ_T0082459.1 MGP_AJ_G0031858.1 mouse_genomes_project 7 23636793 23639838 - Axl protein_coding retained_intron MGP_AJ_T0082460.1 MGP_AJ_G0031858.1 mouse_genomes_project 7 23639218 23666361 - Axl protein_coding retained_intron MGP_AJ_T0082461.1 MGP_AJ_G0031858.1 mouse_genomes_project 7 23641837 23649993 - MGP_AJ_P0082461 Axl protein_coding protein_coding MGP_AJ_T0082462.1 MGP_AJ_G0031858.1 mouse_genomes_project 7 23653595 23662209 - Axl protein_coding retained_intron MGP_AJ_T0082463.1 MGP_AJ_G0031858.1 mouse_genomes_project 7 23661082 23662715 - Axl protein_coding retained_intron MGP_AJ_T0081855.1 MGP_AJ_G0031684.1 mouse_genomes_project 7 13966574 14088140 - MGP_AJ_P0081855 Arhgap35 protein_coding protein_coding MGP_AJ_T0081856.1 MGP_AJ_G0031684.1 mouse_genomes_project 7 13969101 14088084 - MGP_AJ_P0081856 Arhgap35 protein_coding protein_coding MGP_AJ_T0085852.1 MGP_AJ_G0032804.1 mouse_genomes_project 7 109150905 109151964 - MGP_AJ_P0085852 Olfr502 protein_coding protein_coding MGP_AJ_T0102801.1 MGP_AJ_G0040541.1 mouse_genomes_project 7 24697452 24704737 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0083984.1 MGP_AJ_G0032229.1 mouse_genomes_project 7 45223968 45229525 - MGP_AJ_P0083984 Grwd1 protein_coding protein_coding MGP_AJ_T0083985.1 MGP_AJ_G0032229.1 mouse_genomes_project 7 45223971 45229512 - MGP_AJ_P0083985 Grwd1 protein_coding nonsense_mediated_decay MGP_AJ_T0083986.1 MGP_AJ_G0032229.1 mouse_genomes_project 7 45223973 45229680 - MGP_AJ_P0083986 Grwd1 protein_coding protein_coding MGP_AJ_T0083987.1 MGP_AJ_G0032229.1 mouse_genomes_project 7 45224804 45229617 - MGP_AJ_P0083987 Grwd1 protein_coding nonsense_mediated_decay MGP_AJ_T0086482.1 MGP_AJ_G0032955.1 mouse_genomes_project 7 126694144 126893928 - MGP_AJ_P0086482 Gsg1l protein_coding protein_coding MGP_AJ_T0082789.1 MGP_AJ_G0031947.1 mouse_genomes_project 7 27140702 27161577 + MGP_AJ_P0082789 Map4k1 protein_coding protein_coding MGP_AJ_T0082790.1 MGP_AJ_G0031947.1 mouse_genomes_project 7 27140804 27161464 + MGP_AJ_P0082790 Map4k1 protein_coding unknown_likely_coding MGP_AJ_T0086896.1 MGP_AJ_G0033027.1 mouse_genomes_project 7 128425408 128430836 + Phkg2 protein_coding retained_intron MGP_AJ_T0086897.1 MGP_AJ_G0033027.1 mouse_genomes_project 7 128425448 128434609 + MGP_AJ_P0086897 Phkg2 protein_coding nonsense_mediated_decay MGP_AJ_T0086898.1 MGP_AJ_G0033027.1 mouse_genomes_project 7 128425470 128434609 + MGP_AJ_P0086898 Phkg2 protein_coding nonsense_mediated_decay MGP_AJ_T0086899.1 MGP_AJ_G0033027.1 mouse_genomes_project 7 128425472 128431448 + Phkg2 protein_coding retained_intron MGP_AJ_T0086900.1 MGP_AJ_G0033027.1 mouse_genomes_project 7 128425472 128435469 + MGP_AJ_P0086900 Phkg2 protein_coding protein_coding MGP_AJ_T0086901.1 MGP_AJ_G0033027.1 mouse_genomes_project 7 128425746 128435467 + MGP_AJ_P0086901 Phkg2 protein_coding protein_coding MGP_AJ_T0086902.1 MGP_AJ_G0033027.1 mouse_genomes_project 7 128425800 128435467 + MGP_AJ_P0086902 Phkg2 protein_coding nonsense_mediated_decay MGP_AJ_T0086903.1 MGP_AJ_G0033027.1 mouse_genomes_project 7 128425859 128434560 + Phkg2 protein_coding retained_intron MGP_AJ_T0086904.1 MGP_AJ_G0033027.1 mouse_genomes_project 7 128430189 128435462 + MGP_AJ_P0086904 Phkg2 protein_coding nonsense_mediated_decay MGP_AJ_T0086905.1 MGP_AJ_G0033027.1 mouse_genomes_project 7 128431446 128434581 + Phkg2 protein_coding retained_intron MGP_AJ_T0086906.1 MGP_AJ_G0033027.1 mouse_genomes_project 7 128434257 128434848 + Phkg2 protein_coding retained_intron MGP_AJ_T0011686.1 MGP_AJ_G0009808.1 mouse_genomes_project 7 73541811 73542064 + Gm23020 misc_RNA misc_RNA MGP_AJ_T0086056.1 MGP_AJ_G0032863.1 mouse_genomes_project 7 114926489 114966105 - MGP_AJ_P0086056 Copb1 protein_coding protein_coding MGP_AJ_T0102778.1 MGP_AJ_G0040519.1 mouse_genomes_project 7 11775153 11775853 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0002231.1 MGP_AJ_G0002143.1 mouse_genomes_project 7 54987497 54989671 + TEC TEC MGP_AJ_T0086290.1 MGP_AJ_G0032913.1 mouse_genomes_project 7 121376963 121401164 + MGP_AJ_P0086290 Uqcrc2 protein_coding protein_coding MGP_AJ_T0086291.1 MGP_AJ_G0032913.1 mouse_genomes_project 7 121377027 121384992 + Uqcrc2 protein_coding processed_transcript MGP_AJ_T0086292.1 MGP_AJ_G0032913.1 mouse_genomes_project 7 121377302 121387017 + Uqcrc2 protein_coding processed_transcript MGP_AJ_T0086293.1 MGP_AJ_G0032913.1 mouse_genomes_project 7 121379448 121400847 + Uqcrc2 protein_coding processed_transcript MGP_AJ_T0086294.1 MGP_AJ_G0032913.1 mouse_genomes_project 7 121386692 121392705 + Uqcrc2 protein_coding retained_intron MGP_AJ_T0086295.1 MGP_AJ_G0032913.1 mouse_genomes_project 7 121393054 121399651 + Uqcrc2 protein_coding retained_intron MGP_AJ_T0086933.1 MGP_AJ_G0033032.1 mouse_genomes_project 7 128557069 128562547 + MGP_AJ_P0086933 Ctf1 protein_coding protein_coding MGP_AJ_T0086934.1 MGP_AJ_G0033032.1 mouse_genomes_project 7 128557270 128561671 + MGP_AJ_P0086934 Ctf1 protein_coding protein_coding MGP_AJ_T0086935.1 MGP_AJ_G0033032.1 mouse_genomes_project 7 128557277 128561931 + MGP_AJ_P0086935 Ctf1 protein_coding protein_coding MGP_AJ_T0086936.1 MGP_AJ_G0033032.1 mouse_genomes_project 7 128557633 128561367 + Ctf1 protein_coding processed_transcript MGP_AJ_T0086937.1 MGP_AJ_G0033032.1 mouse_genomes_project 7 128557890 128561380 + Ctf1 protein_coding processed_transcript MGP_AJ_T0005308.1 MGP_AJ_G0004502.1 mouse_genomes_project 7 143654818 143666212 + Igf2os antisense antisense MGP_AJ_T0005309.1 MGP_AJ_G0004502.1 mouse_genomes_project 7 143654837 143655828 + Igf2os antisense antisense MGP_AJ_T0005310.1 MGP_AJ_G0004502.1 mouse_genomes_project 7 143660356 143661311 + Igf2os antisense antisense MGP_AJ_T0083953.1 MGP_AJ_G0032222.1 mouse_genomes_project 7 45114106 45116812 + MGP_AJ_P0083953 Rpl18 protein_coding protein_coding MGP_AJ_T0083954.1 MGP_AJ_G0032222.1 mouse_genomes_project 7 45115121 45116095 + Rpl18 protein_coding retained_intron MGP_AJ_T0083955.1 MGP_AJ_G0032222.1 mouse_genomes_project 7 45115178 45116327 + MGP_AJ_P0083955 Rpl18 protein_coding protein_coding MGP_AJ_T0083956.1 MGP_AJ_G0032222.1 mouse_genomes_project 7 45115231 45116762 + Rpl18 protein_coding retained_intron MGP_AJ_T0083957.1 MGP_AJ_G0032222.1 mouse_genomes_project 7 45115565 45116804 + MGP_AJ_P0083957 Rpl18 protein_coding protein_coding MGP_AJ_T0083958.1 MGP_AJ_G0032222.1 mouse_genomes_project 7 45115590 45116807 + MGP_AJ_P0083958 Rpl18 protein_coding protein_coding MGP_AJ_T0083959.1 MGP_AJ_G0032222.1 mouse_genomes_project 7 45116124 45116807 + Rpl18 protein_coding retained_intron MGP_AJ_T0010832.1 MGP_AJ_G0008954.1 mouse_genomes_project 7 1497781 1497891 - Gm23577 miRNA miRNA MGP_AJ_T0085124.1 MGP_AJ_G0032504.1 mouse_genomes_project 7 97943066 97957384 - MGP_AJ_P0085124 Aqp11 protein_coding protein_coding MGP_AJ_T0085125.1 MGP_AJ_G0032504.1 mouse_genomes_project 7 97945443 97957033 - MGP_AJ_P0085125 Aqp11 protein_coding protein_coding MGP_AJ_T0085126.1 MGP_AJ_G0032504.1 mouse_genomes_project 7 97945611 97948455 - Aqp11 protein_coding retained_intron MGP_AJ_T0085127.1 MGP_AJ_G0032504.1 mouse_genomes_project 7 97946492 97952330 - Aqp11 protein_coding retained_intron MGP_AJ_T0085128.1 MGP_AJ_G0032504.1 mouse_genomes_project 7 97948117 97949572 - Aqp11 protein_coding processed_transcript MGP_AJ_T0082713.1 MGP_AJ_G0031930.1 mouse_genomes_project 7 26679911 26683688 - MGP_AJ_P0082713 Nccrp1 protein_coding protein_coding MGP_AJ_T0101451.1 MGP_AJ_G0039417.1 mouse_genomes_project 7 121795914 121796051 - Gm27991 snoRNA snoRNA MGP_AJ_T0082014.1 MGP_AJ_G0031734.1 mouse_genomes_project 7 16734805 16738760 + MGP_AJ_P0082014 Six5 protein_coding protein_coding MGP_AJ_T0015898.1 MGP_AJ_G0013993.1 mouse_genomes_project 7 100545897 100546200 + processed_pseudogene processed_pseudogene MGP_AJ_T0083804.1 MGP_AJ_G0032184.1 mouse_genomes_project 7 44539036 44550959 + MGP_AJ_P0083804 Slc17a7 protein_coding protein_coding MGP_AJ_T0083831.1 MGP_AJ_G0032191.1 mouse_genomes_project 7 44651545 44663027 + MGP_AJ_P0083831 protein_coding protein_coding MGP_AJ_T0083832.1 MGP_AJ_G0032191.1 mouse_genomes_project 7 44656521 44659296 + protein_coding processed_transcript MGP_AJ_T0083833.1 MGP_AJ_G0032191.1 mouse_genomes_project 7 44656772 44660691 + protein_coding retained_intron MGP_AJ_T0083834.1 MGP_AJ_G0032191.1 mouse_genomes_project 7 44656808 44662614 + MGP_AJ_P0083834 protein_coding protein_coding MGP_AJ_T0083835.1 MGP_AJ_G0032191.1 mouse_genomes_project 7 44656905 44663026 + MGP_AJ_P0083835 protein_coding protein_coding MGP_AJ_T0083836.1 MGP_AJ_G0032191.1 mouse_genomes_project 7 44661168 44663031 + protein_coding retained_intron MGP_AJ_T0010847.1 MGP_AJ_G0008969.1 mouse_genomes_project 7 25187905 25187993 - Mir3101 miRNA miRNA MGP_AJ_T0082648.1 MGP_AJ_G0031909.1 mouse_genomes_project 7 26182292 26185604 - MGP_AJ_P0082648 protein_coding protein_coding MGP_AJ_T0102898.1 MGP_AJ_G0040638.1 mouse_genomes_project 7 104101783 104102068 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0084940.1 MGP_AJ_G0032450.1 mouse_genomes_project 7 86573865 86574905 - MGP_AJ_P0084940 Olfr303 protein_coding protein_coding MGP_AJ_T0015816.1 MGP_AJ_G0013911.1 mouse_genomes_project 7 42470277 42470515 + processed_pseudogene processed_pseudogene MGP_AJ_T0085506.1 MGP_AJ_G0032589.1 mouse_genomes_project 7 102914215 102915166 + MGP_AJ_P0085506 Olfr549 protein_coding protein_coding MGP_AJ_T0082297.1 MGP_AJ_G0031826.1 mouse_genomes_project 7 22735366 22740183 + MGP_AJ_P0082297 Cd79a protein_coding protein_coding MGP_AJ_T0084963.1 MGP_AJ_G0032465.1 mouse_genomes_project 7 87768667 88334046 + MGP_AJ_P0084963 Grm5 protein_coding protein_coding MGP_AJ_T0084964.1 MGP_AJ_G0032465.1 mouse_genomes_project 7 87786973 88329858 + MGP_AJ_P0084964 Grm5 protein_coding protein_coding MGP_AJ_T0084965.1 MGP_AJ_G0032465.1 mouse_genomes_project 7 87995049 88000800 + Grm5 protein_coding processed_transcript MGP_AJ_T0083484.1 MGP_AJ_G0032099.1 mouse_genomes_project 7 41950843 41988859 - MGP_AJ_P0083484 protein_coding protein_coding MGP_AJ_T0084637.1 MGP_AJ_G0032374.1 mouse_genomes_project 7 79760635 79805087 + MGP_AJ_P0084637 Wdr93 protein_coding protein_coding MGP_AJ_T0082711.1 MGP_AJ_G0031928.1 mouse_genomes_project 7 26671057 26671988 + MGP_AJ_P0082711 Gm10053 protein_coding protein_coding MGP_AJ_T0008878.1 MGP_AJ_G0007167.1 mouse_genomes_project 7 43587291 43594302 + Gm36864 lincRNA lincRNA MGP_AJ_T0085584.1 MGP_AJ_G0032660.1 mouse_genomes_project 7 104315393 104316329 - MGP_AJ_P0085584 Olfr66 protein_coding protein_coding MGP_AJ_T0083422.1 MGP_AJ_G0032079.1 mouse_genomes_project 7 36452716 36512305 - MGP_AJ_P0083422 Uri1 protein_coding protein_coding MGP_AJ_T0083423.1 MGP_AJ_G0032079.1 mouse_genomes_project 7 36452717 36462751 - Uri1 protein_coding processed_transcript MGP_AJ_T0083424.1 MGP_AJ_G0032079.1 mouse_genomes_project 7 36453366 36512329 - MGP_AJ_P0083424 Uri1 protein_coding protein_coding MGP_AJ_T0083425.1 MGP_AJ_G0032079.1 mouse_genomes_project 7 36454025 36455253 - MGP_AJ_P0083425 Uri1 protein_coding protein_coding MGP_AJ_T0083426.1 MGP_AJ_G0032079.1 mouse_genomes_project 7 36454088 36516332 - MGP_AJ_P0083426 Uri1 protein_coding protein_coding MGP_AJ_T0083427.1 MGP_AJ_G0032079.1 mouse_genomes_project 7 36458400 36458930 - Uri1 protein_coding processed_transcript MGP_AJ_T0083428.1 MGP_AJ_G0032079.1 mouse_genomes_project 7 36462727 36512285 - MGP_AJ_P0083428 Uri1 protein_coding nonsense_mediated_decay MGP_AJ_T0086759.1 MGP_AJ_G0032996.1 mouse_genomes_project 7 127829079 127844081 - MGP_AJ_P0086759 protein_coding nonsense_mediated_decay MGP_AJ_T0102803.1 MGP_AJ_G0040543.1 mouse_genomes_project 7 29506094 29506481 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0015810.1 MGP_AJ_G0013905.1 mouse_genomes_project 7 41485729 41487464 - processed_pseudogene processed_pseudogene MGP_AJ_T0083274.1 MGP_AJ_G0032053.1 mouse_genomes_project 7 32635084 32667047 - MGP_AJ_P0083274 Gpi1 protein_coding protein_coding MGP_AJ_T0083275.1 MGP_AJ_G0032053.1 mouse_genomes_project 7 32635913 32646243 - Gpi1 protein_coding retained_intron MGP_AJ_T0083276.1 MGP_AJ_G0032053.1 mouse_genomes_project 7 32635960 32641816 - MGP_AJ_P0083276 Gpi1 protein_coding nonsense_mediated_decay MGP_AJ_T0083278.1 MGP_AJ_G0032053.1 mouse_genomes_project 7 32636137 32649324 - MGP_AJ_P0083278 Gpi1 protein_coding nonsense_mediated_decay MGP_AJ_T0083279.1 MGP_AJ_G0032053.1 mouse_genomes_project 7 32636161 32639767 - MGP_AJ_P0083279 Gpi1 protein_coding protein_coding MGP_AJ_T0083280.1 MGP_AJ_G0032053.1 mouse_genomes_project 7 32636736 32640184 - Gpi1 protein_coding retained_intron MGP_AJ_T0083281.1 MGP_AJ_G0032053.1 mouse_genomes_project 7 32651096 32666974 - Gpi1 protein_coding retained_intron MGP_AJ_T0083282.1 MGP_AJ_G0032053.1 mouse_genomes_project 7 32665853 32667000 - Gpi1 protein_coding retained_intron MGP_AJ_T0002230.1 MGP_AJ_G0002142.1 mouse_genomes_project 7 54903417 54904189 - TEC TEC MGP_AJ_T0102065.1 MGP_AJ_G0039848.1 mouse_genomes_project 7 14121939 14130421 - transcribed_unprocessed_pseudogene processed_transcript MGP_AJ_T0102066.1 MGP_AJ_G0039848.1 mouse_genomes_project 7 14122322 14124771 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_AJ_T0082832.1 MGP_AJ_G0031957.1 mouse_genomes_project 7 27417095 27418977 - MGP_AJ_P0082832 2200002D01Rik protein_coding protein_coding MGP_AJ_T0082833.1 MGP_AJ_G0031957.1 mouse_genomes_project 7 27418122 27418883 - 2200002D01Rik protein_coding retained_intron MGP_AJ_T0002211.1 MGP_AJ_G0002123.1 mouse_genomes_project 7 35852465 35853668 - TEC TEC MGP_AJ_T0081520.1 MGP_AJ_G0031540.1 mouse_genomes_project 7 1788964 1811972 - MGP_AJ_P0081520 Isoc2b protein_coding protein_coding MGP_AJ_T0083571.1 MGP_AJ_G0032130.1 mouse_genomes_project 7 42954404 42963274 + MGP_AJ_P0083571 Klk6 protein_coding protein_coding MGP_AJ_T0083572.1 MGP_AJ_G0032130.1 mouse_genomes_project 7 42954463 42963030 + MGP_AJ_P0083572 Klk6 protein_coding protein_coding MGP_AJ_T0083573.1 MGP_AJ_G0032130.1 mouse_genomes_project 7 42954475 42959847 + MGP_AJ_P0083573 Klk6 protein_coding protein_coding MGP_AJ_T0083574.1 MGP_AJ_G0032130.1 mouse_genomes_project 7 42956670 42963030 + MGP_AJ_P0083574 Klk6 protein_coding protein_coding MGP_AJ_T0081873.1 MGP_AJ_G0031689.1 mouse_genomes_project 7 14289241 14296730 - MGP_AJ_P0081873 Fkrp protein_coding protein_coding MGP_AJ_T0081874.1 MGP_AJ_G0031689.1 mouse_genomes_project 7 14291607 14295519 - MGP_AJ_P0081874 Fkrp protein_coding protein_coding MGP_AJ_T0081875.1 MGP_AJ_G0031689.1 mouse_genomes_project 7 14293115 14295691 - Fkrp protein_coding retained_intron MGP_AJ_T0081876.1 MGP_AJ_G0031689.1 mouse_genomes_project 7 14294741 14296730 - Fkrp protein_coding retained_intron MGP_AJ_T0082891.1 MGP_AJ_G0031970.1 mouse_genomes_project 7 28131973 28144794 - MGP_AJ_P0082891 Zfp74 protein_coding protein_coding MGP_AJ_T0082892.1 MGP_AJ_G0031970.1 mouse_genomes_project 7 28132668 28157625 - MGP_AJ_P0082892 Zfp74 protein_coding protein_coding MGP_AJ_T0082893.1 MGP_AJ_G0031970.1 mouse_genomes_project 7 28133749 28157625 - MGP_AJ_P0082893 Zfp74 protein_coding protein_coding MGP_AJ_T0082894.1 MGP_AJ_G0031970.1 mouse_genomes_project 7 28135191 28144544 - MGP_AJ_P0082894 Zfp74 protein_coding protein_coding MGP_AJ_T0082895.1 MGP_AJ_G0031970.1 mouse_genomes_project 7 28138892 28157627 - Zfp74 protein_coding processed_transcript MGP_AJ_T0085690.1 MGP_AJ_G0032731.1 mouse_genomes_project 7 105811590 105815761 + MGP_AJ_P0085690 Cnga4 protein_coding protein_coding MGP_AJ_T0008891.1 MGP_AJ_G0007178.1 mouse_genomes_project 7 65040609 65041165 - Gm45214 lincRNA lincRNA MGP_AJ_T0008892.1 MGP_AJ_G0007178.1 mouse_genomes_project 7 65040612 65041225 - Gm45214 lincRNA lincRNA MGP_AJ_T0087751.1 MGP_AJ_G0033222.1 mouse_genomes_project 7 142761747 142789749 + MGP_AJ_P0087751 Muc5ac protein_coding protein_coding MGP_AJ_T0087752.1 MGP_AJ_G0033222.1 mouse_genomes_project 7 142761747 142789530 + MGP_AJ_P0087752 Muc5ac protein_coding protein_coding MGP_AJ_T0009043.1 MGP_AJ_G0007276.1 mouse_genomes_project 7 129343380 129357328 - Gm45018 lincRNA lincRNA MGP_AJ_T0015695.1 MGP_AJ_G0013790.1 mouse_genomes_project 7 1542287 1542888 + processed_pseudogene processed_pseudogene MGP_AJ_T0085667.1 MGP_AJ_G0032715.1 mouse_genomes_project 7 105421422 105422361 + MGP_AJ_P0085667 Olfr677 protein_coding protein_coding MGP_AJ_T0085238.1 MGP_AJ_G0032534.1 mouse_genomes_project 7 100197676 100262360 - MGP_AJ_P0085238 Rnf169 protein_coding protein_coding MGP_AJ_T0085239.1 MGP_AJ_G0032534.1 mouse_genomes_project 7 100212675 100243989 - Rnf169 protein_coding processed_transcript MGP_AJ_T0100177.1 MGP_AJ_G0038143.1 mouse_genomes_project 7 117416970 117417077 - Gm25423 snRNA snRNA MGP_AJ_T0010843.1 MGP_AJ_G0008965.1 mouse_genomes_project 7 22826463 22826527 - Mir7047 miRNA miRNA MGP_AJ_T0083929.1 MGP_AJ_G0032212.1 mouse_genomes_project 7 45011751 45015208 + MGP_AJ_P0083929 Fut1 protein_coding protein_coding MGP_AJ_T0086445.1 MGP_AJ_G0032946.1 mouse_genomes_project 7 124295393 124301107 + MGP_AJ_P0086445 Aqp8 protein_coding protein_coding MGP_AJ_T0086446.1 MGP_AJ_G0032946.1 mouse_genomes_project 7 124295414 124301089 + MGP_AJ_P0086446 Aqp8 protein_coding protein_coding MGP_AJ_T0086447.1 MGP_AJ_G0032946.1 mouse_genomes_project 7 124296853 124301101 + Aqp8 protein_coding processed_transcript MGP_AJ_T0086612.1 MGP_AJ_G0032975.1 mouse_genomes_project 7 127512176 127519292 - MGP_AJ_P0086612 Slx1b protein_coding protein_coding MGP_AJ_T0086613.1 MGP_AJ_G0032975.1 mouse_genomes_project 7 127513175 127519147 - Slx1b protein_coding retained_intron MGP_AJ_T0086614.1 MGP_AJ_G0032975.1 mouse_genomes_project 7 127513615 127519253 - Slx1b protein_coding retained_intron MGP_AJ_T0086615.1 MGP_AJ_G0032975.1 mouse_genomes_project 7 127513615 127519232 - MGP_AJ_P0086615 Slx1b protein_coding nonsense_mediated_decay MGP_AJ_T0086397.1 MGP_AJ_G0032940.1 mouse_genomes_project 7 123482642 123586155 + MGP_AJ_P0086397 Cacng3 protein_coding protein_coding MGP_AJ_T0086398.1 MGP_AJ_G0032940.1 mouse_genomes_project 7 123483541 123585183 + MGP_AJ_P0086398 Cacng3 protein_coding protein_coding MGP_AJ_T0086399.1 MGP_AJ_G0032940.1 mouse_genomes_project 7 123483568 123585302 + MGP_AJ_P0086399 Cacng3 protein_coding protein_coding MGP_AJ_T0002234.1 MGP_AJ_G0002146.1 mouse_genomes_project 7 55886789 55888528 - TEC TEC MGP_AJ_T0015716.1 MGP_AJ_G0013811.1 mouse_genomes_project 7 11210477 11215215 - processed_pseudogene processed_pseudogene MGP_AJ_T0087778.1 MGP_AJ_G0033230.1 mouse_genomes_project 7 143187535 143190432 + MGP_AJ_P0087778 protein_coding protein_coding MGP_AJ_T0101444.1 MGP_AJ_G0039410.1 mouse_genomes_project 7 111744616 111744784 - Gm23262 snoRNA snoRNA MGP_AJ_T0085835.1 MGP_AJ_G0032787.1 mouse_genomes_project 7 108600018 108600951 + MGP_AJ_P0085835 Olfr477 protein_coding protein_coding MGP_AJ_T0010930.1 MGP_AJ_G0009052.1 mouse_genomes_project 7 140947509 140947575 - Mir7062 miRNA miRNA MGP_AJ_T0086715.1 MGP_AJ_G0032988.1 mouse_genomes_project 7 127687803 127691209 + MGP_AJ_P0086715 Hirip3 protein_coding protein_coding MGP_AJ_T0086716.1 MGP_AJ_G0032988.1 mouse_genomes_project 7 127688270 127689236 + Hirip3 protein_coding retained_intron MGP_AJ_T0086717.1 MGP_AJ_G0032988.1 mouse_genomes_project 7 127688295 127689557 + Hirip3 protein_coding retained_intron MGP_AJ_T0086718.1 MGP_AJ_G0032988.1 mouse_genomes_project 7 127688298 127690003 + Hirip3 protein_coding processed_transcript MGP_AJ_T0086719.1 MGP_AJ_G0032988.1 mouse_genomes_project 7 127688312 127689263 + MGP_AJ_P0086719 Hirip3 protein_coding protein_coding MGP_AJ_T0086720.1 MGP_AJ_G0032988.1 mouse_genomes_project 7 127689674 127690360 + Hirip3 protein_coding retained_intron MGP_AJ_T0086721.1 MGP_AJ_G0032988.1 mouse_genomes_project 7 127690247 127690750 + Hirip3 protein_coding retained_intron MGP_AJ_T0083773.1 MGP_AJ_G0032171.1 mouse_genomes_project 7 44365469 44370462 + MGP_AJ_P0083773 Irf3 protein_coding protein_coding MGP_AJ_T0083774.1 MGP_AJ_G0032171.1 mouse_genomes_project 7 44365769 44370006 + MGP_AJ_P0083774 Irf3 protein_coding protein_coding MGP_AJ_T0015897.1 MGP_AJ_G0013992.1 mouse_genomes_project 7 99098202 99098566 - processed_pseudogene processed_pseudogene MGP_AJ_T0082184.1 MGP_AJ_G0031792.1 mouse_genomes_project 7 21721746 21722900 + MGP_AJ_P0082184 protein_coding protein_coding MGP_AJ_T0015800.1 MGP_AJ_G0013895.1 mouse_genomes_project 7 40127567 40127795 - processed_pseudogene processed_pseudogene MGP_AJ_T0082996.1 MGP_AJ_G0031998.1 mouse_genomes_project 7 28651433 28661462 - Kirrel2 protein_coding retained_intron MGP_AJ_T0082997.1 MGP_AJ_G0031998.1 mouse_genomes_project 7 28651435 28661343 - MGP_AJ_P0082997 Kirrel2 protein_coding protein_coding MGP_AJ_T0082998.1 MGP_AJ_G0031998.1 mouse_genomes_project 7 28651967 28654737 - MGP_AJ_P0082998 Kirrel2 protein_coding protein_coding MGP_AJ_T0082999.1 MGP_AJ_G0031998.1 mouse_genomes_project 7 28652015 28660662 - MGP_AJ_P0082999 Kirrel2 protein_coding protein_coding MGP_AJ_T0083000.1 MGP_AJ_G0031998.1 mouse_genomes_project 7 28660796 28661503 - Kirrel2 protein_coding processed_transcript MGP_AJ_T0002306.1 MGP_AJ_G0002217.1 mouse_genomes_project 7 127213771 127215654 + TEC TEC MGP_AJ_T0015883.1 MGP_AJ_G0013978.1 mouse_genomes_project 7 94686457 94686589 + processed_pseudogene processed_pseudogene MGP_AJ_T0102878.1 MGP_AJ_G0040618.1 mouse_genomes_project 7 85942300 85942620 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0083698.1 MGP_AJ_G0032152.1 mouse_genomes_project 7 43966067 44024783 - MGP_AJ_P0083698 protein_coding protein_coding MGP_AJ_T0098472.1 MGP_AJ_G0036456.1 mouse_genomes_project 7 108950612 108951558 - pseudogene pseudogene MGP_AJ_T0002212.1 MGP_AJ_G0002124.1 mouse_genomes_project 7 35952184 35954487 - TEC TEC MGP_AJ_T0008897.1 MGP_AJ_G0007182.1 mouse_genomes_project 7 65922055 65922627 - Gm45081 lincRNA lincRNA MGP_AJ_T0082214.1 MGP_AJ_G0031802.1 mouse_genomes_project 7 22083315 22098193 - MGP_AJ_P0082214 Zfp94 protein_coding protein_coding MGP_AJ_T0082215.1 MGP_AJ_G0031802.1 mouse_genomes_project 7 22083407 22098254 - MGP_AJ_P0082215 Zfp94 protein_coding protein_coding MGP_AJ_T0082216.1 MGP_AJ_G0031802.1 mouse_genomes_project 7 22085237 22090984 - Zfp94 protein_coding retained_intron MGP_AJ_T0082217.1 MGP_AJ_G0031802.1 mouse_genomes_project 7 22090165 22098212 - Zfp94 protein_coding processed_transcript MGP_AJ_T0082218.1 MGP_AJ_G0031802.1 mouse_genomes_project 7 22090458 22098196 - Zfp94 protein_coding retained_intron MGP_AJ_T0082219.1 MGP_AJ_G0031802.1 mouse_genomes_project 7 22090573 22098170 - Zfp94 protein_coding processed_transcript MGP_AJ_T0087700.1 MGP_AJ_G0033213.1 mouse_genomes_project 7 142440917 142448360 + MGP_AJ_P0087700 Rplp2 protein_coding protein_coding MGP_AJ_T0087701.1 MGP_AJ_G0033213.1 mouse_genomes_project 7 142441166 142446465 + MGP_AJ_P0087701 Rplp2 protein_coding unknown_likely_coding MGP_AJ_T0087702.1 MGP_AJ_G0033213.1 mouse_genomes_project 7 142441178 142442164 + Rplp2 protein_coding retained_intron MGP_AJ_T0087703.1 MGP_AJ_G0033213.1 mouse_genomes_project 7 142441216 142442575 + Rplp2 protein_coding retained_intron MGP_AJ_T0087704.1 MGP_AJ_G0033213.1 mouse_genomes_project 7 142441259 142448125 + MGP_AJ_P0087704 Rplp2 protein_coding protein_coding MGP_AJ_T0087705.1 MGP_AJ_G0033213.1 mouse_genomes_project 7 142441397 142448125 + MGP_AJ_P0087705 Rplp2 protein_coding protein_coding MGP_AJ_T0087706.1 MGP_AJ_G0033213.1 mouse_genomes_project 7 142445933 142448124 + Rplp2 protein_coding processed_transcript MGP_AJ_T0087241.1 MGP_AJ_G0033095.1 mouse_genomes_project 7 133514658 133519418 - MGP_AJ_P0087241 Nkx1-2 protein_coding protein_coding MGP_AJ_T0102745.1 MGP_AJ_G0040486.1 mouse_genomes_project 7 7389749 7390645 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0084568.1 MGP_AJ_G0032364.1 mouse_genomes_project 7 79136379 79146352 - Mfge8 protein_coding retained_intron MGP_AJ_T0084569.1 MGP_AJ_G0032364.1 mouse_genomes_project 7 79136379 79152373 - MGP_AJ_P0084569 Mfge8 protein_coding protein_coding MGP_AJ_T0084570.1 MGP_AJ_G0032364.1 mouse_genomes_project 7 79136380 79152380 - MGP_AJ_P0084570 Mfge8 protein_coding protein_coding MGP_AJ_T0084571.1 MGP_AJ_G0032364.1 mouse_genomes_project 7 79136727 79152351 - MGP_AJ_P0084571 Mfge8 protein_coding nonsense_mediated_decay MGP_AJ_T0084572.1 MGP_AJ_G0032364.1 mouse_genomes_project 7 79136750 79139599 - Mfge8 protein_coding retained_intron MGP_AJ_T0084573.1 MGP_AJ_G0032364.1 mouse_genomes_project 7 79139106 79145373 - Mfge8 protein_coding retained_intron MGP_AJ_T0084574.1 MGP_AJ_G0032364.1 mouse_genomes_project 7 79144443 79145616 - Mfge8 protein_coding retained_intron MGP_AJ_T0084575.1 MGP_AJ_G0032364.1 mouse_genomes_project 7 79145434 79150125 - Mfge8 protein_coding processed_transcript MGP_AJ_T0084576.1 MGP_AJ_G0032364.1 mouse_genomes_project 7 79147486 79152309 - Mfge8 protein_coding retained_intron MGP_AJ_T0008937.1 MGP_AJ_G0007214.1 mouse_genomes_project 7 74933334 74982864 + Gm44904 lincRNA lincRNA MGP_AJ_T0010923.1 MGP_AJ_G0009045.1 mouse_genomes_project 7 129333446 129333571 - Gm24365 miRNA miRNA MGP_AJ_T0087509.1 MGP_AJ_G0033175.1 mouse_genomes_project 7 141829634 141830857 + MGP_AJ_P0087509 Scgb1c1 protein_coding protein_coding MGP_AJ_T0086465.1 MGP_AJ_G0032953.1 mouse_genomes_project 7 126453487 126520401 - MGP_AJ_P0086465 Gtf3c1 protein_coding protein_coding MGP_AJ_T0086466.1 MGP_AJ_G0032953.1 mouse_genomes_project 7 126453487 126520504 - MGP_AJ_P0086466 Gtf3c1 protein_coding protein_coding MGP_AJ_T0086467.1 MGP_AJ_G0032953.1 mouse_genomes_project 7 126456716 126462511 - Gtf3c1 protein_coding retained_intron MGP_AJ_T0086468.1 MGP_AJ_G0032953.1 mouse_genomes_project 7 126460063 126468626 - MGP_AJ_P0086468 Gtf3c1 protein_coding nonsense_mediated_decay MGP_AJ_T0086469.1 MGP_AJ_G0032953.1 mouse_genomes_project 7 126474727 126520484 - Gtf3c1 protein_coding retained_intron MGP_AJ_T0086470.1 MGP_AJ_G0032953.1 mouse_genomes_project 7 126475039 126520466 - MGP_AJ_P0086470 Gtf3c1 protein_coding nonsense_mediated_decay MGP_AJ_T0086471.1 MGP_AJ_G0032953.1 mouse_genomes_project 7 126475159 126481781 - MGP_AJ_P0086471 Gtf3c1 protein_coding nonsense_mediated_decay MGP_AJ_T0086472.1 MGP_AJ_G0032953.1 mouse_genomes_project 7 126480431 126482548 - Gtf3c1 protein_coding retained_intron MGP_AJ_T0086473.1 MGP_AJ_G0032953.1 mouse_genomes_project 7 126503943 126512221 - Gtf3c1 protein_coding retained_intron MGP_AJ_T0086474.1 MGP_AJ_G0032953.1 mouse_genomes_project 7 126505952 126519260 - MGP_AJ_P0086474 Gtf3c1 protein_coding protein_coding MGP_AJ_T0083783.1 MGP_AJ_G0032174.1 mouse_genomes_project 7 44398510 44423868 - MGP_AJ_P0083783 Prr12 protein_coding protein_coding MGP_AJ_T0102740.1 MGP_AJ_G0040481.1 mouse_genomes_project 7 758847 795162 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0010829.1 MGP_AJ_G0008951.1 mouse_genomes_project 7 324938 325029 + Gm23450 miRNA miRNA MGP_AJ_T0005141.1 MGP_AJ_G0004383.1 mouse_genomes_project 7 1446292 1447943 + Gm15873 antisense antisense MGP_AJ_T0005142.1 MGP_AJ_G0004383.1 mouse_genomes_project 7 1446390 1450330 + Gm15873 antisense antisense MGP_AJ_T0081500.1 MGP_AJ_G0031534.1 mouse_genomes_project 7 1711816 1718665 - MGP_AJ_P0081500 Il11 protein_coding protein_coding MGP_AJ_T0081501.1 MGP_AJ_G0031534.1 mouse_genomes_project 7 1713435 1723502 - MGP_AJ_P0081501 Il11 protein_coding protein_coding MGP_AJ_T0101454.1 MGP_AJ_G0039420.1 mouse_genomes_project 7 128379657 128379787 + Snora30 snoRNA snoRNA MGP_AJ_T0082186.1 MGP_AJ_G0031794.1 mouse_genomes_project 7 21823626 21855384 + MGP_AJ_P0082186 Zfp180 protein_coding protein_coding MGP_AJ_T0082187.1 MGP_AJ_G0031794.1 mouse_genomes_project 7 21823692 21855376 + MGP_AJ_P0082187 Zfp180 protein_coding protein_coding MGP_AJ_T0082188.1 MGP_AJ_G0031794.1 mouse_genomes_project 7 21823715 21852241 + MGP_AJ_P0082188 Zfp180 protein_coding nonsense_mediated_decay MGP_AJ_T0082189.1 MGP_AJ_G0031794.1 mouse_genomes_project 7 21844925 21849197 + Zfp180 protein_coding retained_intron MGP_AJ_T0015713.1 MGP_AJ_G0013808.1 mouse_genomes_project 7 10961150 10961364 - processed_pseudogene processed_pseudogene MGP_AJ_T0009023.1 MGP_AJ_G0007264.1 mouse_genomes_project 7 126233528 126234648 - Gm44766 lincRNA lincRNA MGP_AJ_T0002209.1 MGP_AJ_G0002121.1 mouse_genomes_project 7 35213579 35215962 + TEC TEC MGP_AJ_T0087871.1 MGP_AJ_G0033246.1 mouse_genomes_project 7 143750077 143750903 - MGP_AJ_P0087871 Rpl13-ps3 protein_coding protein_coding MGP_AJ_T0085302.1 MGP_AJ_G0032548.1 mouse_genomes_project 7 100889262 100926082 + MGP_AJ_P0085302 Rab6a protein_coding protein_coding MGP_AJ_T0085303.1 MGP_AJ_G0032548.1 mouse_genomes_project 7 100889439 100926082 + MGP_AJ_P0085303 Rab6a protein_coding protein_coding MGP_AJ_T0085304.1 MGP_AJ_G0032548.1 mouse_genomes_project 7 100889543 100926082 + MGP_AJ_P0085304 Rab6a protein_coding protein_coding MGP_AJ_T0085305.1 MGP_AJ_G0032548.1 mouse_genomes_project 7 100918835 100924181 + Rab6a protein_coding retained_intron MGP_AJ_T0011703.1 MGP_AJ_G0009825.1 mouse_genomes_project 7 144255746 144255865 + Gm27803 misc_RNA misc_RNA MGP_AJ_T0086077.1 MGP_AJ_G0032868.1 mouse_genomes_project 7 115425541 115430825 + MGP_AJ_P0086077 Calcb protein_coding protein_coding MGP_AJ_T0086078.1 MGP_AJ_G0032868.1 mouse_genomes_project 7 115425573 115430523 + MGP_AJ_P0086078 Calcb protein_coding protein_coding MGP_AJ_T0086079.1 MGP_AJ_G0032868.1 mouse_genomes_project 7 115426409 115427038 + MGP_AJ_P0086079 Calcb protein_coding protein_coding MGP_AJ_T0084338.1 MGP_AJ_G0032321.1 mouse_genomes_project 7 65122276 65201241 - MGP_AJ_P0084338 Tjp1 protein_coding protein_coding MGP_AJ_T0084339.1 MGP_AJ_G0032321.1 mouse_genomes_project 7 65122819 65201017 - MGP_AJ_P0084339 Tjp1 protein_coding nonsense_mediated_decay MGP_AJ_T0084340.1 MGP_AJ_G0032321.1 mouse_genomes_project 7 65122819 65201017 - MGP_AJ_P0084340 Tjp1 protein_coding protein_coding MGP_AJ_T0084341.1 MGP_AJ_G0032321.1 mouse_genomes_project 7 65123615 65128415 - Tjp1 protein_coding processed_transcript MGP_AJ_T0084342.1 MGP_AJ_G0032321.1 mouse_genomes_project 7 65168797 65171372 - Tjp1 protein_coding retained_intron MGP_AJ_T0084343.1 MGP_AJ_G0032321.1 mouse_genomes_project 7 65171191 65367872 - MGP_AJ_P0084343 Tjp1 protein_coding protein_coding MGP_AJ_T0084344.1 MGP_AJ_G0032321.1 mouse_genomes_project 7 65353273 65367957 - Tjp1 protein_coding retained_intron MGP_AJ_T0085850.1 MGP_AJ_G0032802.1 mouse_genomes_project 7 109053802 109054747 + MGP_AJ_P0085850 Olfr497 protein_coding protein_coding MGP_AJ_T0087203.1 MGP_AJ_G0033081.1 mouse_genomes_project 7 132217954 132232986 - MGP_AJ_P0087203 Cuzd1 protein_coding protein_coding MGP_AJ_T0008910.1 MGP_AJ_G0007191.1 mouse_genomes_project 7 71228879 71268854 + Gm29295 lincRNA lincRNA MGP_AJ_T0085543.1 MGP_AJ_G0032623.1 mouse_genomes_project 7 103566642 103569383 + MGP_AJ_P0085543 Olfr592 protein_coding protein_coding MGP_AJ_T0085544.1 MGP_AJ_G0032623.1 mouse_genomes_project 7 103568444 103569383 + MGP_AJ_P0085544 Olfr592 protein_coding protein_coding MGP_AJ_T0008972.1 MGP_AJ_G0007232.1 mouse_genomes_project 7 92914523 92918432 + Gm26981 lincRNA lincRNA MGP_AJ_T0085541.1 MGP_AJ_G0032621.1 mouse_genomes_project 7 103542754 103543708 - MGP_AJ_P0085541 Olfr589 protein_coding protein_coding MGP_AJ_T0082883.1 MGP_AJ_G0031968.1 mouse_genomes_project 7 28099096 28111859 - MGP_AJ_P0082883 Zfp27 protein_coding protein_coding MGP_AJ_T0082884.1 MGP_AJ_G0031968.1 mouse_genomes_project 7 28099479 28106695 - MGP_AJ_P0082884 Zfp27 protein_coding protein_coding MGP_AJ_T0082885.1 MGP_AJ_G0031968.1 mouse_genomes_project 7 28099480 28111386 - MGP_AJ_P0082885 Zfp27 protein_coding protein_coding MGP_AJ_T0082886.1 MGP_AJ_G0031968.1 mouse_genomes_project 7 28099480 28111816 - MGP_AJ_P0082886 Zfp27 protein_coding protein_coding MGP_AJ_T0082887.1 MGP_AJ_G0031968.1 mouse_genomes_project 7 28099843 28105043 - MGP_AJ_P0082887 Zfp27 protein_coding protein_coding MGP_AJ_T0082888.1 MGP_AJ_G0031968.1 mouse_genomes_project 7 28106443 28111342 - Zfp27 protein_coding processed_transcript MGP_AJ_T0082096.1 MGP_AJ_G0031758.1 mouse_genomes_project 7 17165759 17172088 + MGP_AJ_P0082096 Nkpd1 protein_coding protein_coding MGP_AJ_T0086782.1 MGP_AJ_G0033001.1 mouse_genomes_project 7 127855351 127856580 - MGP_AJ_P0086782 Kif22 protein_coding protein_coding MGP_AJ_T0086783.1 MGP_AJ_G0033001.1 mouse_genomes_project 7 127855353 127871922 - MGP_AJ_P0086783 Kif22 protein_coding protein_coding MGP_AJ_T0086784.1 MGP_AJ_G0033001.1 mouse_genomes_project 7 127855354 127855739 - Kif22 protein_coding retained_intron MGP_AJ_T0086785.1 MGP_AJ_G0033001.1 mouse_genomes_project 7 127856726 127860327 - Kif22 protein_coding retained_intron MGP_AJ_T0086786.1 MGP_AJ_G0033001.1 mouse_genomes_project 7 127859850 127871860 - Kif22 protein_coding retained_intron MGP_AJ_T0086787.1 MGP_AJ_G0033001.1 mouse_genomes_project 7 127861207 127871857 - MGP_AJ_P0086787 Kif22 protein_coding protein_coding MGP_AJ_T0015764.1 MGP_AJ_G0013859.1 mouse_genomes_project 7 28908915 28909443 + processed_pseudogene processed_pseudogene MGP_AJ_T0086504.1 MGP_AJ_G0032957.1 mouse_genomes_project 7 127087537 127109899 + MGP_AJ_P0086504 Sbk1 protein_coding protein_coding MGP_AJ_T0086505.1 MGP_AJ_G0032957.1 mouse_genomes_project 7 127088318 127104813 + MGP_AJ_P0086505 Sbk1 protein_coding protein_coding MGP_AJ_T0086506.1 MGP_AJ_G0032957.1 mouse_genomes_project 7 127105962 127107703 + MGP_AJ_P0086506 Sbk1 protein_coding protein_coding MGP_AJ_T0081605.1 MGP_AJ_G0031581.1 mouse_genomes_project 7 3463378 3464404 + MGP_AJ_P0081605 Olfr1346 protein_coding protein_coding MGP_AJ_T0015902.1 MGP_AJ_G0013997.1 mouse_genomes_project 7 103523223 103523524 + processed_pseudogene processed_pseudogene MGP_AJ_T0005233.1 MGP_AJ_G0004449.1 mouse_genomes_project 7 79945278 79948983 + Gm26646 antisense antisense MGP_AJ_T0005234.1 MGP_AJ_G0004449.1 mouse_genomes_project 7 79947310 79948983 + Gm26646 antisense antisense MGP_AJ_T0084549.1 MGP_AJ_G0032360.1 mouse_genomes_project 7 78897401 78909885 + Aen protein_coding processed_transcript MGP_AJ_T0084550.1 MGP_AJ_G0032360.1 mouse_genomes_project 7 78897474 78909885 + MGP_AJ_P0084550 Aen protein_coding protein_coding MGP_AJ_T0084551.1 MGP_AJ_G0032360.1 mouse_genomes_project 7 78897481 78907057 + MGP_AJ_P0084551 Aen protein_coding protein_coding MGP_AJ_T0084552.1 MGP_AJ_G0032360.1 mouse_genomes_project 7 78897556 78907054 + MGP_AJ_P0084552 Aen protein_coding protein_coding MGP_AJ_T0084553.1 MGP_AJ_G0032360.1 mouse_genomes_project 7 78899578 78901494 + MGP_AJ_P0084553 Aen protein_coding protein_coding MGP_AJ_T0084554.1 MGP_AJ_G0032360.1 mouse_genomes_project 7 78901032 78904674 + Aen protein_coding processed_transcript MGP_AJ_T0084555.1 MGP_AJ_G0032360.1 mouse_genomes_project 7 78901250 78906037 + MGP_AJ_P0084555 Aen protein_coding protein_coding MGP_AJ_T0081950.1 MGP_AJ_G0031715.1 mouse_genomes_project 7 16139985 16150176 - MGP_AJ_P0081950 Psg27 protein_coding protein_coding MGP_AJ_T0088014.1 MGP_AJ_G0033281.1 mouse_genomes_project 7 146355127 146365145 + MGP_AJ_P0088014 Mrgprd protein_coding protein_coding MGP_AJ_T0086641.1 MGP_AJ_G0032979.1 mouse_genomes_project 7 127592113 127601390 + MGP_AJ_P0086641 Gdpd3 protein_coding protein_coding MGP_AJ_T0086642.1 MGP_AJ_G0032979.1 mouse_genomes_project 7 127592624 127593992 + Gdpd3 protein_coding retained_intron MGP_AJ_T0086643.1 MGP_AJ_G0032979.1 mouse_genomes_project 7 127592626 127594441 + Gdpd3 protein_coding retained_intron MGP_AJ_T0086644.1 MGP_AJ_G0032979.1 mouse_genomes_project 7 127592954 127593815 + Gdpd3 protein_coding retained_intron MGP_AJ_T0086645.1 MGP_AJ_G0032979.1 mouse_genomes_project 7 127593929 127596948 + Gdpd3 protein_coding retained_intron MGP_AJ_T0086646.1 MGP_AJ_G0032979.1 mouse_genomes_project 7 127594299 127601394 + Gdpd3 protein_coding retained_intron MGP_AJ_T0087484.1 MGP_AJ_G0033155.1 mouse_genomes_project 7 141267285 141268335 + MGP_AJ_P0087484 Olfr525 protein_coding protein_coding MGP_AJ_T0002205.1 MGP_AJ_G0002117.1 mouse_genomes_project 7 33736559 33737314 + TEC TEC MGP_AJ_T0010823.1 MGP_AJ_G0008945.1 mouse_genomes_project 7 125467 125549 + Mir292 miRNA miRNA MGP_AJ_T0083340.1 MGP_AJ_G0032066.1 mouse_genomes_project 7 33787685 33844917 + MGP_AJ_P0083340 Rhpn2 protein_coding protein_coding MGP_AJ_T0083341.1 MGP_AJ_G0032066.1 mouse_genomes_project 7 33787845 33844913 + MGP_AJ_P0083341 Rhpn2 protein_coding protein_coding MGP_AJ_T0083342.1 MGP_AJ_G0032066.1 mouse_genomes_project 7 33831878 33834216 + Rhpn2 protein_coding retained_intron MGP_AJ_T0083343.1 MGP_AJ_G0032066.1 mouse_genomes_project 7 33835125 33837847 + Rhpn2 protein_coding retained_intron MGP_AJ_T0102849.1 MGP_AJ_G0040589.1 mouse_genomes_project 7 47925273 47926237 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0084509.1 MGP_AJ_G0032354.1 mouse_genomes_project 7 75777794 75816939 + MGP_AJ_P0084509 Klhl25 protein_coding protein_coding MGP_AJ_T0084510.1 MGP_AJ_G0032354.1 mouse_genomes_project 7 75777822 75816938 + MGP_AJ_P0084510 Klhl25 protein_coding protein_coding MGP_AJ_T0084511.1 MGP_AJ_G0032354.1 mouse_genomes_project 7 75777825 75792590 + MGP_AJ_P0084511 Klhl25 protein_coding protein_coding MGP_AJ_T0084512.1 MGP_AJ_G0032354.1 mouse_genomes_project 7 75777848 75792586 + MGP_AJ_P0084512 Klhl25 protein_coding protein_coding MGP_AJ_T0084513.1 MGP_AJ_G0032354.1 mouse_genomes_project 7 75777881 75816333 + Klhl25 protein_coding processed_transcript MGP_AJ_T0084514.1 MGP_AJ_G0032354.1 mouse_genomes_project 7 75777925 75790726 + MGP_AJ_P0084514 Klhl25 protein_coding protein_coding MGP_AJ_T0087069.1 MGP_AJ_G0033061.1 mouse_genomes_project 7 129094017 129098490 + MGP_AJ_P0087069 Tgfb1i1 protein_coding protein_coding MGP_AJ_T0005224.1 MGP_AJ_G0004442.1 mouse_genomes_project 7 73416355 73433124 + Gm44686 antisense antisense MGP_AJ_T0081247.1 MGP_AJ_G0031488.1 mouse_genomes_project 7 48312 57943 - AU018091 protein_coding processed_transcript MGP_AJ_T0081248.1 MGP_AJ_G0031488.1 mouse_genomes_project 7 48312 62361 - MGP_AJ_P0081248 AU018091 protein_coding protein_coding MGP_AJ_T0081249.1 MGP_AJ_G0031488.1 mouse_genomes_project 7 55770 62263 - MGP_AJ_P0081249 AU018091 protein_coding protein_coding MGP_AJ_T0082494.1 MGP_AJ_G0031870.1 mouse_genomes_project 7 24777559 24791315 + protein_coding retained_intron MGP_AJ_T0087240.1 MGP_AJ_G0033094.1 mouse_genomes_project 7 133475987 133494911 - MGP_AJ_P0087240 Oat protein_coding protein_coding MGP_AJ_T0085626.1 MGP_AJ_G0032688.1 mouse_genomes_project 7 104673997 104683471 - MGP_AJ_P0085626 protein_coding nonsense_mediated_decay MGP_AJ_T0085627.1 MGP_AJ_G0032688.1 mouse_genomes_project 7 104673997 104689743 - MGP_AJ_P0085627 protein_coding protein_coding MGP_AJ_T0102832.1 MGP_AJ_G0040572.1 mouse_genomes_project 7 43459942 43461510 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0005134.1 MGP_AJ_G0004380.1 mouse_genomes_project 7 965134 1022113 - 9430041J12Rik antisense antisense MGP_AJ_T0005135.1 MGP_AJ_G0004380.1 mouse_genomes_project 7 965164 1021832 - 9430041J12Rik antisense antisense MGP_AJ_T0005136.1 MGP_AJ_G0004380.1 mouse_genomes_project 7 965473 1021832 - 9430041J12Rik antisense antisense MGP_AJ_T0005137.1 MGP_AJ_G0004380.1 mouse_genomes_project 7 1021294 1021832 - 9430041J12Rik antisense pseudogene MGP_AJ_T0082178.1 MGP_AJ_G0031786.1 mouse_genomes_project 7 21253755 21255076 + MGP_AJ_P0082178 protein_coding protein_coding MGP_AJ_T0083536.1 MGP_AJ_G0032115.1 mouse_genomes_project 7 42651675 42660869 - MGP_AJ_P0083536 Cd33 protein_coding protein_coding MGP_AJ_T0083537.1 MGP_AJ_G0032115.1 mouse_genomes_project 7 42655452 42660555 - MGP_AJ_P0083537 Cd33 protein_coding protein_coding MGP_AJ_T0083538.1 MGP_AJ_G0032115.1 mouse_genomes_project 7 42655983 42660132 - MGP_AJ_P0083538 Cd33 protein_coding protein_coding MGP_AJ_T0083539.1 MGP_AJ_G0032115.1 mouse_genomes_project 7 42657809 42660541 - Cd33 protein_coding retained_intron MGP_AJ_T0083540.1 MGP_AJ_G0032115.1 mouse_genomes_project 7 42659496 42660408 - Cd33 protein_coding processed_transcript MGP_AJ_T0086806.1 MGP_AJ_G0033007.1 mouse_genomes_project 7 128029154 128040131 - MGP_AJ_P0086806 Tbc1d10b protein_coding protein_coding MGP_AJ_T0086807.1 MGP_AJ_G0033007.1 mouse_genomes_project 7 128030417 128035446 - MGP_AJ_P0086807 Tbc1d10b protein_coding protein_coding MGP_AJ_T0086808.1 MGP_AJ_G0033007.1 mouse_genomes_project 7 128030752 128031681 - Tbc1d10b protein_coding retained_intron MGP_AJ_T0086809.1 MGP_AJ_G0033007.1 mouse_genomes_project 7 128031057 128039410 - Tbc1d10b protein_coding processed_transcript MGP_AJ_T0086810.1 MGP_AJ_G0033007.1 mouse_genomes_project 7 128031517 128032650 - Tbc1d10b protein_coding retained_intron MGP_AJ_T0086811.1 MGP_AJ_G0033007.1 mouse_genomes_project 7 128031562 128035346 - Tbc1d10b protein_coding retained_intron MGP_AJ_T0086812.1 MGP_AJ_G0033007.1 mouse_genomes_project 7 128031948 128035387 - Tbc1d10b protein_coding retained_intron MGP_AJ_T0086813.1 MGP_AJ_G0033007.1 mouse_genomes_project 7 128034645 128035167 - Tbc1d10b protein_coding retained_intron MGP_AJ_T0087056.1 MGP_AJ_G0033058.1 mouse_genomes_project 7 129078493 129082067 - MGP_AJ_P0087056 9130023H24Rik protein_coding protein_coding MGP_AJ_T0015724.1 MGP_AJ_G0013819.1 mouse_genomes_project 7 13987225 13987964 - processed_pseudogene processed_pseudogene MGP_AJ_T0083822.1 MGP_AJ_G0032190.1 mouse_genomes_project 7 44608061 44613308 - MGP_AJ_P0083822 Cd37 protein_coding protein_coding MGP_AJ_T0083823.1 MGP_AJ_G0032190.1 mouse_genomes_project 7 44608065 44613283 - Cd37 protein_coding retained_intron MGP_AJ_T0083824.1 MGP_AJ_G0032190.1 mouse_genomes_project 7 44608069 44613583 - MGP_AJ_P0083824 Cd37 protein_coding protein_coding MGP_AJ_T0083825.1 MGP_AJ_G0032190.1 mouse_genomes_project 7 44608071 44609928 - Cd37 protein_coding processed_transcript MGP_AJ_T0083826.1 MGP_AJ_G0032190.1 mouse_genomes_project 7 44608319 44611516 - Cd37 protein_coding processed_transcript MGP_AJ_T0083827.1 MGP_AJ_G0032190.1 mouse_genomes_project 7 44608598 44613342 - MGP_AJ_P0083827 Cd37 protein_coding protein_coding MGP_AJ_T0083828.1 MGP_AJ_G0032190.1 mouse_genomes_project 7 44608778 44609887 - Cd37 protein_coding processed_transcript MGP_AJ_T0083829.1 MGP_AJ_G0032190.1 mouse_genomes_project 7 44609166 44613525 - MGP_AJ_P0083829 Cd37 protein_coding protein_coding MGP_AJ_T0083830.1 MGP_AJ_G0032190.1 mouse_genomes_project 7 44612201 44613264 - Cd37 protein_coding retained_intron MGP_AJ_T0085318.1 MGP_AJ_G0032551.1 mouse_genomes_project 7 101137602 101154476 - MGP_AJ_P0085318 Relt protein_coding nonsense_mediated_decay MGP_AJ_T0085319.1 MGP_AJ_G0032551.1 mouse_genomes_project 7 101138302 101144187 - MGP_AJ_P0085319 Relt protein_coding protein_coding MGP_AJ_T0085320.1 MGP_AJ_G0032551.1 mouse_genomes_project 7 101142183 101146501 - MGP_AJ_P0085320 Relt protein_coding protein_coding MGP_AJ_T0085321.1 MGP_AJ_G0032551.1 mouse_genomes_project 7 101142183 101147374 - MGP_AJ_P0085321 Relt protein_coding protein_coding MGP_AJ_T0085322.1 MGP_AJ_G0032551.1 mouse_genomes_project 7 101142193 101154228 - MGP_AJ_P0085322 Relt protein_coding protein_coding MGP_AJ_T0085323.1 MGP_AJ_G0032551.1 mouse_genomes_project 7 101144128 101154468 - MGP_AJ_P0085323 Relt protein_coding protein_coding MGP_AJ_T0015803.1 MGP_AJ_G0013898.1 mouse_genomes_project 7 40405283 40407115 + processed_pseudogene processed_pseudogene MGP_AJ_T0081851.1 MGP_AJ_G0031681.1 mouse_genomes_project 7 13873319 13910137 + MGP_AJ_P0081851 Zc3h4 protein_coding unknown_likely_coding MGP_AJ_T0081852.1 MGP_AJ_G0031681.1 mouse_genomes_project 7 13873634 13910134 + MGP_AJ_P0081852 Zc3h4 protein_coding protein_coding MGP_AJ_T0083553.1 MGP_AJ_G0032121.1 mouse_genomes_project 7 42800397 42806680 + MGP_AJ_P0083553 Ctu1 protein_coding protein_coding MGP_AJ_T0102073.1 MGP_AJ_G0039852.1 mouse_genomes_project 7 40384077 40384546 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_AJ_T0015907.1 MGP_AJ_G0014002.1 mouse_genomes_project 7 104745311 104746441 - processed_pseudogene processed_pseudogene MGP_AJ_T0085937.1 MGP_AJ_G0032841.1 mouse_genomes_project 7 110957579 111293079 - MGP_AJ_P0085937 protein_coding protein_coding MGP_AJ_T0085938.1 MGP_AJ_G0032841.1 mouse_genomes_project 7 110957588 111293077 - MGP_AJ_P0085938 protein_coding protein_coding MGP_AJ_T0085939.1 MGP_AJ_G0032841.1 mouse_genomes_project 7 110958964 111292918 - MGP_AJ_P0085939 protein_coding protein_coding MGP_AJ_T0085940.1 MGP_AJ_G0032841.1 mouse_genomes_project 7 110970722 110990276 - protein_coding retained_intron MGP_AJ_T0085941.1 MGP_AJ_G0032841.1 mouse_genomes_project 7 110979914 111012253 - MGP_AJ_P0085941 protein_coding protein_coding MGP_AJ_T0085942.1 MGP_AJ_G0032841.1 mouse_genomes_project 7 110989174 111002631 - protein_coding retained_intron MGP_AJ_T0085943.1 MGP_AJ_G0032841.1 mouse_genomes_project 7 110991317 111014692 - MGP_AJ_P0085943 protein_coding protein_coding MGP_AJ_T0085944.1 MGP_AJ_G0032841.1 mouse_genomes_project 7 111028014 111293071 - protein_coding retained_intron MGP_AJ_T0085945.1 MGP_AJ_G0032841.1 mouse_genomes_project 7 111028325 111293053 - protein_coding retained_intron MGP_AJ_T0085946.1 MGP_AJ_G0032841.1 mouse_genomes_project 7 111073750 111094543 - MGP_AJ_P0085946 protein_coding protein_coding MGP_AJ_T0085947.1 MGP_AJ_G0032841.1 mouse_genomes_project 7 111077593 111293039 - protein_coding retained_intron MGP_AJ_T0085948.1 MGP_AJ_G0032841.1 mouse_genomes_project 7 111093536 111293062 - MGP_AJ_P0085948 protein_coding protein_coding MGP_AJ_T0085949.1 MGP_AJ_G0032841.1 mouse_genomes_project 7 111093723 111116361 - MGP_AJ_P0085949 protein_coding protein_coding MGP_AJ_T0085950.1 MGP_AJ_G0032841.1 mouse_genomes_project 7 111116304 111292918 - MGP_AJ_P0085950 protein_coding nonsense_mediated_decay MGP_AJ_T0081796.1 MGP_AJ_G0031670.1 mouse_genomes_project 7 13558612 13578134 + MGP_AJ_P0081796 Napa protein_coding protein_coding MGP_AJ_T0081797.1 MGP_AJ_G0031670.1 mouse_genomes_project 7 13558763 13573695 + Napa protein_coding processed_transcript MGP_AJ_T0081798.1 MGP_AJ_G0031670.1 mouse_genomes_project 7 13558787 13573294 + Napa protein_coding retained_intron MGP_AJ_T0081799.1 MGP_AJ_G0031670.1 mouse_genomes_project 7 13558793 13569467 + Napa protein_coding processed_transcript MGP_AJ_T0081800.1 MGP_AJ_G0031670.1 mouse_genomes_project 7 13569208 13574385 + Napa protein_coding retained_intron MGP_AJ_T0081801.1 MGP_AJ_G0031670.1 mouse_genomes_project 7 13573803 13576718 + Napa protein_coding retained_intron MGP_AJ_T0081802.1 MGP_AJ_G0031670.1 mouse_genomes_project 7 13575262 13576898 + Napa protein_coding processed_transcript MGP_AJ_T0084762.1 MGP_AJ_G0032396.1 mouse_genomes_project 7 80637357 80741774 - MGP_AJ_P0084762 Crtc3 protein_coding protein_coding MGP_AJ_T0084763.1 MGP_AJ_G0032396.1 mouse_genomes_project 7 80643568 80660273 - MGP_AJ_P0084763 Crtc3 protein_coding nonsense_mediated_decay MGP_AJ_T0084764.1 MGP_AJ_G0032396.1 mouse_genomes_project 7 80646459 80649805 - Crtc3 protein_coding retained_intron MGP_AJ_T0084765.1 MGP_AJ_G0032396.1 mouse_genomes_project 7 80646521 80680554 - MGP_AJ_P0084765 Crtc3 protein_coding nonsense_mediated_decay MGP_AJ_T0084766.1 MGP_AJ_G0032396.1 mouse_genomes_project 7 80668435 80680635 - Crtc3 protein_coding retained_intron MGP_AJ_T0084767.1 MGP_AJ_G0032396.1 mouse_genomes_project 7 80726088 80741774 - Crtc3 protein_coding retained_intron MGP_AJ_T0082190.1 MGP_AJ_G0031795.1 mouse_genomes_project 7 21859841 21874646 + MGP_AJ_P0082190 Zfp112 protein_coding unknown_likely_coding MGP_AJ_T0082191.1 MGP_AJ_G0031795.1 mouse_genomes_project 7 21859892 21875362 + MGP_AJ_P0082191 Zfp112 protein_coding protein_coding MGP_AJ_T0082192.1 MGP_AJ_G0031795.1 mouse_genomes_project 7 21859900 21874903 + MGP_AJ_P0082192 Zfp112 protein_coding protein_coding MGP_AJ_T0082193.1 MGP_AJ_G0031795.1 mouse_genomes_project 7 21859936 21862047 + Zfp112 protein_coding retained_intron MGP_AJ_T0008956.1 MGP_AJ_G0007225.1 mouse_genomes_project 7 81611434 81617457 + 2900076A07Rik lincRNA lincRNA MGP_AJ_T0008957.1 MGP_AJ_G0007225.1 mouse_genomes_project 7 81611447 81618049 + 2900076A07Rik lincRNA lincRNA MGP_AJ_T0008958.1 MGP_AJ_G0007225.1 mouse_genomes_project 7 81611455 81619391 + 2900076A07Rik lincRNA lincRNA MGP_AJ_T0008959.1 MGP_AJ_G0007225.1 mouse_genomes_project 7 81611455 81617341 + 2900076A07Rik lincRNA lincRNA MGP_AJ_T0008960.1 MGP_AJ_G0007225.1 mouse_genomes_project 7 81611490 81617143 + 2900076A07Rik lincRNA lincRNA MGP_AJ_T0008961.1 MGP_AJ_G0007225.1 mouse_genomes_project 7 81616301 81617414 + 2900076A07Rik lincRNA lincRNA MGP_AJ_T0008962.1 MGP_AJ_G0007225.1 mouse_genomes_project 7 81616678 81617493 + 2900076A07Rik lincRNA lincRNA MGP_AJ_T0008963.1 MGP_AJ_G0007225.1 mouse_genomes_project 7 81616693 81619395 + 2900076A07Rik lincRNA lincRNA MGP_AJ_T0085537.1 MGP_AJ_G0032617.1 mouse_genomes_project 7 103396695 103397655 + MGP_AJ_P0085537 Olfr583 protein_coding protein_coding MGP_AJ_T0086275.1 MGP_AJ_G0032907.1 mouse_genomes_project 7 120868336 120881864 - MGP_AJ_P0086275 Zp2 protein_coding protein_coding MGP_AJ_T0086053.1 MGP_AJ_G0032861.1 mouse_genomes_project 7 114466954 114753749 + MGP_AJ_P0086053 Spon1 protein_coding protein_coding MGP_AJ_T0086054.1 MGP_AJ_G0032861.1 mouse_genomes_project 7 114467130 114635023 + MGP_AJ_P0086054 Spon1 protein_coding protein_coding MGP_AJ_T0015914.1 MGP_AJ_G0014009.1 mouse_genomes_project 7 111180566 111181159 + processed_pseudogene processed_pseudogene MGP_AJ_T0085662.1 MGP_AJ_G0032710.1 mouse_genomes_project 7 105316919 105317858 - MGP_AJ_P0085662 Olfr670 protein_coding protein_coding MGP_AJ_T0009046.1 MGP_AJ_G0007279.1 mouse_genomes_project 7 130244598 130249412 - Gm44591 lincRNA lincRNA MGP_AJ_T0086236.1 MGP_AJ_G0032898.1 mouse_genomes_project 7 120419126 120444447 + MGP_AJ_P0086236 Acsm4 protein_coding protein_coding MGP_AJ_T0018370.1 MGP_AJ_G0015650.1 mouse_genomes_project 7 55989313 56000357 - Gm34121 processed_transcript lincRNA MGP_AJ_T0018371.1 MGP_AJ_G0015650.1 mouse_genomes_project 7 55996774 56000322 - Gm34121 processed_transcript retained_intron MGP_AJ_T0086797.1 MGP_AJ_G0033005.1 mouse_genomes_project 7 127961494 127967077 - MGP_AJ_P0086797 Spn protein_coding nonsense_mediated_decay MGP_AJ_T0086798.1 MGP_AJ_G0033005.1 mouse_genomes_project 7 127962732 127965829 - MGP_AJ_P0086798 Spn protein_coding protein_coding MGP_AJ_T0086799.1 MGP_AJ_G0033005.1 mouse_genomes_project 7 127962964 127967086 - MGP_AJ_P0086799 Spn protein_coding protein_coding MGP_AJ_T0102902.1 MGP_AJ_G0040642.1 mouse_genomes_project 7 104414100 104415006 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0002267.1 MGP_AJ_G0002178.1 mouse_genomes_project 7 77394917 77395804 + TEC TEC MGP_AJ_T0081606.1 MGP_AJ_G0031582.1 mouse_genomes_project 7 3470164 3479115 - MGP_AJ_P0081606 Olfr5 protein_coding protein_coding MGP_AJ_T0010933.1 MGP_AJ_G0009055.1 mouse_genomes_project 7 142973149 142973212 + Mir3104 miRNA miRNA MGP_AJ_T0083719.1 MGP_AJ_G0032158.1 mouse_genomes_project 7 44179852 44194486 + MGP_AJ_P0083719 Il4i1 protein_coding protein_coding MGP_AJ_T0083720.1 MGP_AJ_G0032158.1 mouse_genomes_project 7 44180134 44204353 + MGP_AJ_P0083720 Il4i1 protein_coding protein_coding MGP_AJ_T0083721.1 MGP_AJ_G0032158.1 mouse_genomes_project 7 44180151 44196627 + Il4i1 protein_coding processed_transcript MGP_AJ_T0083722.1 MGP_AJ_G0032158.1 mouse_genomes_project 7 44199835 44204358 + MGP_AJ_P0083722 Il4i1 protein_coding protein_coding MGP_AJ_T0083723.1 MGP_AJ_G0032158.1 mouse_genomes_project 7 44199839 44201845 + Il4i1 protein_coding retained_intron MGP_AJ_T0083724.1 MGP_AJ_G0032158.1 mouse_genomes_project 7 44202239 44203330 + Il4i1 protein_coding retained_intron MGP_AJ_T0083725.1 MGP_AJ_G0032158.1 mouse_genomes_project 7 44202746 44203317 + MGP_AJ_P0083725 Il4i1 protein_coding protein_coding MGP_AJ_T0084456.1 MGP_AJ_G0032341.1 mouse_genomes_project 7 67802425 68079791 + MGP_AJ_P0084456 Igf1r protein_coding protein_coding MGP_AJ_T0102844.1 MGP_AJ_G0040584.1 mouse_genomes_project 7 47572932 47882754 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0002213.1 MGP_AJ_G0002125.1 mouse_genomes_project 7 36004723 36005530 - TEC TEC MGP_AJ_T0087096.1 MGP_AJ_G0033065.1 mouse_genomes_project 7 129294216 129316086 - MGP_AJ_P0087096 Tial1 protein_coding protein_coding MGP_AJ_T0087097.1 MGP_AJ_G0033065.1 mouse_genomes_project 7 129294664 129316066 - Tial1 protein_coding retained_intron MGP_AJ_T0087098.1 MGP_AJ_G0033065.1 mouse_genomes_project 7 129295838 129316087 - MGP_AJ_P0087098 Tial1 protein_coding protein_coding MGP_AJ_T0087099.1 MGP_AJ_G0033065.1 mouse_genomes_project 7 129296230 129315737 - MGP_AJ_P0087099 Tial1 protein_coding protein_coding MGP_AJ_T0087100.1 MGP_AJ_G0033065.1 mouse_genomes_project 7 129296644 129299341 - MGP_AJ_P0087100 Tial1 protein_coding nonsense_mediated_decay MGP_AJ_T0087101.1 MGP_AJ_G0033065.1 mouse_genomes_project 7 129296715 129316131 - MGP_AJ_P0087101 Tial1 protein_coding nonsense_mediated_decay MGP_AJ_T0087102.1 MGP_AJ_G0033065.1 mouse_genomes_project 7 129296715 129315623 - MGP_AJ_P0087102 Tial1 protein_coding protein_coding MGP_AJ_T0087103.1 MGP_AJ_G0033065.1 mouse_genomes_project 7 129296715 129315769 - MGP_AJ_P0087103 Tial1 protein_coding protein_coding MGP_AJ_T0087104.1 MGP_AJ_G0033065.1 mouse_genomes_project 7 129296746 129315760 - MGP_AJ_P0087104 Tial1 protein_coding protein_coding MGP_AJ_T0087105.1 MGP_AJ_G0033065.1 mouse_genomes_project 7 129298249 129302782 - MGP_AJ_P0087105 Tial1 protein_coding nonsense_mediated_decay MGP_AJ_T0087106.1 MGP_AJ_G0033065.1 mouse_genomes_project 7 129298724 129300141 - Tial1 protein_coding retained_intron MGP_AJ_T0087107.1 MGP_AJ_G0033065.1 mouse_genomes_project 7 129299247 129309446 - MGP_AJ_P0087107 Tial1 protein_coding nonsense_mediated_decay MGP_AJ_T0087108.1 MGP_AJ_G0033065.1 mouse_genomes_project 7 129301198 129303006 - Tial1 protein_coding retained_intron MGP_AJ_T0087109.1 MGP_AJ_G0033065.1 mouse_genomes_project 7 129302283 129303314 - Tial1 protein_coding retained_intron MGP_AJ_T0082035.1 MGP_AJ_G0031741.1 mouse_genomes_project 7 16855260 16866825 + MGP_AJ_P0082035 Gpr4 protein_coding protein_coding MGP_AJ_T0084579.1 MGP_AJ_G0032366.1 mouse_genomes_project 7 79381065 79393288 - MGP_AJ_P0084579 Rlbp1 protein_coding protein_coding MGP_AJ_T0084580.1 MGP_AJ_G0032366.1 mouse_genomes_project 7 79381066 79393199 - MGP_AJ_P0084580 Rlbp1 protein_coding protein_coding MGP_AJ_T0084581.1 MGP_AJ_G0032366.1 mouse_genomes_project 7 79381723 79383899 - Rlbp1 protein_coding retained_intron MGP_AJ_T0084582.1 MGP_AJ_G0032366.1 mouse_genomes_project 7 79382099 79390231 - MGP_AJ_P0084582 Rlbp1 protein_coding protein_coding MGP_AJ_T0084583.1 MGP_AJ_G0032366.1 mouse_genomes_project 7 79383579 79392781 - MGP_AJ_P0084583 Rlbp1 protein_coding protein_coding MGP_AJ_T0084584.1 MGP_AJ_G0032366.1 mouse_genomes_project 7 79386278 79392845 - MGP_AJ_P0084584 Rlbp1 protein_coding protein_coding MGP_AJ_T0084585.1 MGP_AJ_G0032366.1 mouse_genomes_project 7 79387914 79392714 - MGP_AJ_P0084585 Rlbp1 protein_coding protein_coding MGP_AJ_T0084586.1 MGP_AJ_G0032366.1 mouse_genomes_project 7 79389976 79393152 - MGP_AJ_P0084586 Rlbp1 protein_coding protein_coding MGP_AJ_T0083921.1 MGP_AJ_G0032210.1 mouse_genomes_project 7 44960702 44983315 + MGP_AJ_P0083921 Bcat2 protein_coding protein_coding MGP_AJ_T0083922.1 MGP_AJ_G0032210.1 mouse_genomes_project 7 44960899 44980366 + Bcat2 protein_coding retained_intron MGP_AJ_T0083923.1 MGP_AJ_G0032210.1 mouse_genomes_project 7 44960922 44983315 + MGP_AJ_P0083923 Bcat2 protein_coding protein_coding MGP_AJ_T0083924.1 MGP_AJ_G0032210.1 mouse_genomes_project 7 44961545 44983315 + MGP_AJ_P0083924 Bcat2 protein_coding protein_coding MGP_AJ_T0083925.1 MGP_AJ_G0032210.1 mouse_genomes_project 7 44964448 44983315 + MGP_AJ_P0083925 Bcat2 protein_coding protein_coding MGP_AJ_T0083926.1 MGP_AJ_G0032210.1 mouse_genomes_project 7 44966669 44978632 + MGP_AJ_P0083926 Bcat2 protein_coding protein_coding MGP_AJ_T0083927.1 MGP_AJ_G0032210.1 mouse_genomes_project 7 44966791 44978751 + Bcat2 protein_coding retained_intron MGP_AJ_T0082636.1 MGP_AJ_G0031905.1 mouse_genomes_project 7 26049784 26068315 - MGP_AJ_P0082636 Zfp780b protein_coding protein_coding MGP_AJ_T0086834.1 MGP_AJ_G0033012.1 mouse_genomes_project 7 128088495 128092246 - MGP_AJ_P0086834 Dctpp1 protein_coding protein_coding MGP_AJ_T0085174.1 MGP_AJ_G0032515.1 mouse_genomes_project 7 98822833 98893567 - MGP_AJ_P0085174 Emsy protein_coding protein_coding MGP_AJ_T0085175.1 MGP_AJ_G0032515.1 mouse_genomes_project 7 98825186 98893334 - MGP_AJ_P0085175 Emsy protein_coding protein_coding MGP_AJ_T0085176.1 MGP_AJ_G0032515.1 mouse_genomes_project 7 98826850 98893339 - MGP_AJ_P0085176 Emsy protein_coding protein_coding MGP_AJ_T0085177.1 MGP_AJ_G0032515.1 mouse_genomes_project 7 98827516 98830482 - Emsy protein_coding retained_intron MGP_AJ_T0085178.1 MGP_AJ_G0032515.1 mouse_genomes_project 7 98829745 98831262 - Emsy protein_coding processed_transcript MGP_AJ_T0085179.1 MGP_AJ_G0032515.1 mouse_genomes_project 7 98831370 98849812 - MGP_AJ_P0085179 Emsy protein_coding protein_coding MGP_AJ_T0085180.1 MGP_AJ_G0032515.1 mouse_genomes_project 7 98832740 98838556 - Emsy protein_coding retained_intron MGP_AJ_T0085181.1 MGP_AJ_G0032515.1 mouse_genomes_project 7 98833290 98852355 - MGP_AJ_P0085181 Emsy protein_coding protein_coding MGP_AJ_T0085182.1 MGP_AJ_G0032515.1 mouse_genomes_project 7 98836723 98839016 - Emsy protein_coding retained_intron MGP_AJ_T0085183.1 MGP_AJ_G0032515.1 mouse_genomes_project 7 98838824 98893383 - MGP_AJ_P0085183 Emsy protein_coding protein_coding MGP_AJ_T0085184.1 MGP_AJ_G0032515.1 mouse_genomes_project 7 98867098 98893352 - MGP_AJ_P0085184 Emsy protein_coding protein_coding MGP_AJ_T0085185.1 MGP_AJ_G0032515.1 mouse_genomes_project 7 98874087 98882004 - MGP_AJ_P0085185 Emsy protein_coding protein_coding MGP_AJ_T0085186.1 MGP_AJ_G0032515.1 mouse_genomes_project 7 98879864 98893571 - Emsy protein_coding retained_intron MGP_AJ_T0015873.1 MGP_AJ_G0013968.1 mouse_genomes_project 7 84926638 84926978 - processed_pseudogene processed_pseudogene MGP_AJ_T0083906.1 MGP_AJ_G0032208.1 mouse_genomes_project 7 44915095 44940479 + MGP_AJ_P0083906 Plekha4 protein_coding protein_coding MGP_AJ_T0083907.1 MGP_AJ_G0032208.1 mouse_genomes_project 7 44915095 44945128 + MGP_AJ_P0083907 Plekha4 protein_coding protein_coding MGP_AJ_T0083908.1 MGP_AJ_G0032208.1 mouse_genomes_project 7 44920638 44945128 + MGP_AJ_P0083908 Plekha4 protein_coding nonsense_mediated_decay MGP_AJ_T0083909.1 MGP_AJ_G0032208.1 mouse_genomes_project 7 44920685 44923175 + MGP_AJ_P0083909 Plekha4 protein_coding protein_coding MGP_AJ_T0083910.1 MGP_AJ_G0032208.1 mouse_genomes_project 7 44920750 44945128 + MGP_AJ_P0083910 Plekha4 protein_coding protein_coding MGP_AJ_T0083911.1 MGP_AJ_G0032208.1 mouse_genomes_project 7 44921222 44944931 + MGP_AJ_P0083911 Plekha4 protein_coding protein_coding MGP_AJ_T0083912.1 MGP_AJ_G0032208.1 mouse_genomes_project 7 44940744 44945128 + Plekha4 protein_coding processed_transcript MGP_AJ_T0083913.1 MGP_AJ_G0032208.1 mouse_genomes_project 7 44943588 44945128 + Plekha4 protein_coding retained_intron MGP_AJ_T0085292.1 MGP_AJ_G0032546.1 mouse_genomes_project 7 100822004 100825091 + MGP_AJ_P0085292 Coa4 protein_coding protein_coding MGP_AJ_T0085293.1 MGP_AJ_G0032546.1 mouse_genomes_project 7 100822136 100824175 + MGP_AJ_P0085293 Coa4 protein_coding protein_coding MGP_AJ_T0081542.1 MGP_AJ_G0031551.1 mouse_genomes_project 7 1992294 1996048 + MGP_AJ_P0081542 protein_coding protein_coding MGP_AJ_T0084980.1 MGP_AJ_G0032469.1 mouse_genomes_project 7 89621400 89627142 + MGP_AJ_P0084980 Fzd4 protein_coding protein_coding MGP_AJ_T0010870.1 MGP_AJ_G0008992.1 mouse_genomes_project 7 53986673 53986781 - Gm27921 miRNA miRNA MGP_AJ_T0005198.1 MGP_AJ_G0004425.1 mouse_genomes_project 7 34275967 34310599 + E130304I02Rik antisense antisense MGP_AJ_T0005199.1 MGP_AJ_G0004425.1 mouse_genomes_project 7 34275968 34276403 + E130304I02Rik antisense antisense MGP_AJ_T0081665.1 MGP_AJ_G0031623.1 mouse_genomes_project 7 9929060 9969847 - MGP_AJ_P0081665 Vmn2r56 protein_coding protein_coding MGP_AJ_T0084463.1 MGP_AJ_G0032345.1 mouse_genomes_project 7 71226410 71228914 - MGP_AJ_P0084463 Gm10295 protein_coding protein_coding MGP_AJ_T0005294.1 MGP_AJ_G0004491.1 mouse_genomes_project 7 128847811 128851085 - Gm15533 antisense antisense MGP_AJ_T0005295.1 MGP_AJ_G0004491.1 mouse_genomes_project 7 128848771 128851115 - Gm15533 antisense antisense MGP_AJ_T0083807.1 MGP_AJ_G0032187.1 mouse_genomes_project 7 44558436 44579736 - MGP_AJ_P0083807 Ccdc155 protein_coding protein_coding MGP_AJ_T0083808.1 MGP_AJ_G0032187.1 mouse_genomes_project 7 44558740 44564855 - Ccdc155 protein_coding retained_intron MGP_AJ_T0005222.1 MGP_AJ_G0004441.1 mouse_genomes_project 7 73180655 73244958 - A730056A06Rik antisense antisense MGP_AJ_T0005223.1 MGP_AJ_G0004441.1 mouse_genomes_project 7 73182897 73244967 - A730056A06Rik antisense antisense MGP_AJ_T0002236.1 MGP_AJ_G0002148.1 mouse_genomes_project 7 55948219 55949397 - TEC TEC MGP_AJ_T0015802.1 MGP_AJ_G0013897.1 mouse_genomes_project 7 40137340 40140830 + processed_pseudogene processed_pseudogene MGP_AJ_T0015825.1 MGP_AJ_G0013920.1 mouse_genomes_project 7 47956827 47957101 - processed_pseudogene processed_pseudogene MGP_AJ_T0088001.1 MGP_AJ_G0033275.1 mouse_genomes_project 7 145878573 145882431 + MGP_AJ_P0088001 Fgf4 protein_coding protein_coding MGP_AJ_T0084676.1 MGP_AJ_G0032386.1 mouse_genomes_project 7 80305670 80308462 + MGP_AJ_P0084676 Ngrn protein_coding protein_coding MGP_AJ_T0084677.1 MGP_AJ_G0032386.1 mouse_genomes_project 7 80305675 80308462 + Ngrn protein_coding retained_intron MGP_AJ_T0082245.1 MGP_AJ_G0031809.1 mouse_genomes_project 7 22284088 22307803 + MGP_AJ_P0082245 Cadm4 protein_coding protein_coding MGP_AJ_T0082246.1 MGP_AJ_G0031809.1 mouse_genomes_project 7 22303233 22306067 + Cadm4 protein_coding processed_transcript MGP_AJ_T0101433.1 MGP_AJ_G0039399.1 mouse_genomes_project 7 99179727 99179849 + Gm23479 snoRNA snoRNA MGP_AJ_T0082991.1 MGP_AJ_G0031996.1 mouse_genomes_project 7 28625665 28632664 + MGP_AJ_P0082991 Nfkbid protein_coding protein_coding MGP_AJ_T0082992.1 MGP_AJ_G0031996.1 mouse_genomes_project 7 28626339 28632663 + MGP_AJ_P0082992 Nfkbid protein_coding protein_coding MGP_AJ_T0082993.1 MGP_AJ_G0031996.1 mouse_genomes_project 7 28627194 28632664 + MGP_AJ_P0082993 Nfkbid protein_coding protein_coding MGP_AJ_T0082994.1 MGP_AJ_G0031996.1 mouse_genomes_project 7 28629476 28630180 + Nfkbid protein_coding retained_intron MGP_AJ_T0002249.1 MGP_AJ_G0002161.1 mouse_genomes_project 7 73273697 73275769 + TEC TEC MGP_AJ_T0084110.1 MGP_AJ_G0032268.1 mouse_genomes_project 7 48293166 48294289 + MGP_AJ_P0084110 Mrgprb8 protein_coding protein_coding MGP_AJ_T0100143.1 MGP_AJ_G0038109.1 mouse_genomes_project 7 36312463 36312569 - Gm22302 snRNA snRNA MGP_AJ_T0082266.1 MGP_AJ_G0031814.1 mouse_genomes_project 7 22384043 22387624 - MGP_AJ_P0082266 Zfp575 protein_coding protein_coding MGP_AJ_T0081951.1 MGP_AJ_G0031716.1 mouse_genomes_project 7 16190558 16199976 - MGP_AJ_P0081951 protein_coding protein_coding MGP_AJ_T0086912.1 MGP_AJ_G0033029.1 mouse_genomes_project 7 128440933 128456971 + MGP_AJ_P0086912 Rnf40 protein_coding protein_coding MGP_AJ_T0086913.1 MGP_AJ_G0033029.1 mouse_genomes_project 7 128441085 128455766 + MGP_AJ_P0086913 Rnf40 protein_coding protein_coding MGP_AJ_T0086914.1 MGP_AJ_G0033029.1 mouse_genomes_project 7 128441085 128455757 + MGP_AJ_P0086914 Rnf40 protein_coding protein_coding MGP_AJ_T0086915.1 MGP_AJ_G0033029.1 mouse_genomes_project 7 128444579 128446891 + Rnf40 protein_coding retained_intron MGP_AJ_T0086916.1 MGP_AJ_G0033029.1 mouse_genomes_project 7 128445040 128448397 + Rnf40 protein_coding retained_intron MGP_AJ_T0086917.1 MGP_AJ_G0033029.1 mouse_genomes_project 7 128448977 128452779 + Rnf40 protein_coding retained_intron MGP_AJ_T0084180.1 MGP_AJ_G0032289.1 mouse_genomes_project 7 54803725 55205529 + Luzp2 protein_coding retained_intron MGP_AJ_T0084181.1 MGP_AJ_G0032289.1 mouse_genomes_project 7 54803842 55225005 + MGP_AJ_P0084181 Luzp2 protein_coding protein_coding MGP_AJ_T0085827.1 MGP_AJ_G0032780.1 mouse_genomes_project 7 108334436 108344014 - MGP_AJ_P0085827 Cyb5r2 protein_coding protein_coding MGP_AJ_T0085828.1 MGP_AJ_G0032780.1 mouse_genomes_project 7 108336205 108343244 - MGP_AJ_P0085828 Cyb5r2 protein_coding unknown_likely_coding MGP_AJ_T0100179.1 MGP_AJ_G0038145.1 mouse_genomes_project 7 120702085 120702186 + Gm25217 snRNA snRNA MGP_AJ_T0086592.1 MGP_AJ_G0032972.1 mouse_genomes_project 7 127444331 127446708 - MGP_AJ_P0086592 Nupr1 protein_coding protein_coding MGP_AJ_T0086593.1 MGP_AJ_G0032972.1 mouse_genomes_project 7 127444334 127448024 - Nupr1 protein_coding retained_intron MGP_AJ_T0086594.1 MGP_AJ_G0032972.1 mouse_genomes_project 7 127444360 127446376 - MGP_AJ_P0086594 Nupr1 protein_coding nonsense_mediated_decay MGP_AJ_T0086595.1 MGP_AJ_G0032972.1 mouse_genomes_project 7 127444524 127446507 - MGP_AJ_P0086595 Nupr1 protein_coding nonsense_mediated_decay MGP_AJ_T0086596.1 MGP_AJ_G0032972.1 mouse_genomes_project 7 127445979 127451650 - Nupr1 protein_coding processed_transcript MGP_AJ_T0086597.1 MGP_AJ_G0032972.1 mouse_genomes_project 7 127445979 127447029 - Nupr1 protein_coding processed_transcript MGP_AJ_T0083502.1 MGP_AJ_G0032104.1 mouse_genomes_project 7 42534927 42545303 + protein_coding retained_intron MGP_AJ_T0083503.1 MGP_AJ_G0032104.1 mouse_genomes_project 7 42534956 42545303 + protein_coding retained_intron MGP_AJ_T0083504.1 MGP_AJ_G0032104.1 mouse_genomes_project 7 42535161 42539877 + protein_coding retained_intron MGP_AJ_T0081776.1 MGP_AJ_G0031659.1 mouse_genomes_project 7 11849180 11850844 - MGP_AJ_P0081776 Vmn1r90 protein_coding protein_coding MGP_AJ_T0082180.1 MGP_AJ_G0031788.1 mouse_genomes_project 7 21632748 21633663 + MGP_AJ_P0082180 Vmn1r178 protein_coding protein_coding MGP_AJ_T0084989.1 MGP_AJ_G0032473.1 mouse_genomes_project 7 90043276 90082042 - MGP_AJ_P0084989 Ccdc81 protein_coding nonsense_mediated_decay MGP_AJ_T0084990.1 MGP_AJ_G0032473.1 mouse_genomes_project 7 90043517 90082031 - MGP_AJ_P0084990 Ccdc81 protein_coding protein_coding MGP_AJ_T0011687.1 MGP_AJ_G0009809.1 mouse_genomes_project 7 74859433 74859784 - Gm22326 misc_RNA misc_RNA MGP_AJ_T0083374.1 MGP_AJ_G0032072.1 mouse_genomes_project 7 34046064 34052605 - MGP_AJ_P0083374 Rgs9bp protein_coding protein_coding MGP_AJ_T0102888.1 MGP_AJ_G0040628.1 mouse_genomes_project 7 89949380 89949593 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0087926.1 MGP_AJ_G0033259.1 mouse_genomes_project 7 144539461 144582515 - MGP_AJ_P0087926 Cars protein_coding protein_coding MGP_AJ_T0087927.1 MGP_AJ_G0033259.1 mouse_genomes_project 7 144539938 144582481 - MGP_AJ_P0087927 Cars protein_coding protein_coding MGP_AJ_T0087928.1 MGP_AJ_G0033259.1 mouse_genomes_project 7 144543972 144550519 - Cars protein_coding processed_transcript MGP_AJ_T0087929.1 MGP_AJ_G0033259.1 mouse_genomes_project 7 144546818 144551285 - Cars protein_coding retained_intron MGP_AJ_T0087930.1 MGP_AJ_G0033259.1 mouse_genomes_project 7 144551095 144552362 - Cars protein_coding processed_transcript MGP_AJ_T0087931.1 MGP_AJ_G0033259.1 mouse_genomes_project 7 144552210 144556776 - Cars protein_coding retained_intron MGP_AJ_T0087932.1 MGP_AJ_G0033259.1 mouse_genomes_project 7 144567833 144579185 - Cars protein_coding processed_transcript MGP_AJ_T0087933.1 MGP_AJ_G0033259.1 mouse_genomes_project 7 144569234 144582106 - Cars protein_coding processed_transcript MGP_AJ_T0087934.1 MGP_AJ_G0033259.1 mouse_genomes_project 7 144574509 144582456 - Cars protein_coding processed_transcript MGP_AJ_T0085453.1 MGP_AJ_G0032575.1 mouse_genomes_project 7 102414294 102447767 + MGP_AJ_P0085453 protein_coding nonsense_mediated_decay MGP_AJ_T0085454.1 MGP_AJ_G0032575.1 mouse_genomes_project 7 102414294 102447319 + MGP_AJ_P0085454 protein_coding protein_coding MGP_AJ_T0085456.1 MGP_AJ_G0032575.1 mouse_genomes_project 7 102414359 102447237 + MGP_AJ_P0085456 protein_coding protein_coding MGP_AJ_T0085457.1 MGP_AJ_G0032575.1 mouse_genomes_project 7 102424452 102447237 + MGP_AJ_P0085457 protein_coding nonsense_mediated_decay MGP_AJ_T0085458.1 MGP_AJ_G0032575.1 mouse_genomes_project 7 102424456 102447229 + MGP_AJ_P0085458 protein_coding nonsense_mediated_decay MGP_AJ_T0100162.1 MGP_AJ_G0038128.1 mouse_genomes_project 7 88274887 88274951 - Gm24249 snRNA snRNA MGP_AJ_T0085843.1 MGP_AJ_G0032795.1 mouse_genomes_project 7 108782510 108783024 - MGP_AJ_P0085843 protein_coding protein_coding MGP_AJ_T0082496.1 MGP_AJ_G0031872.1 mouse_genomes_project 7 25032422 25040310 + protein_coding retained_intron MGP_AJ_T0082498.1 MGP_AJ_G0031872.1 mouse_genomes_project 7 25032431 25039768 + MGP_AJ_P0082498 protein_coding protein_coding MGP_AJ_T0010856.1 MGP_AJ_G0008978.1 mouse_genomes_project 7 28794853 28794911 + Mir3569 miRNA miRNA MGP_AJ_T0082380.1 MGP_AJ_G0031841.1 mouse_genomes_project 7 23152367 23155042 + Tmem145 protein_coding retained_intron MGP_AJ_T0082381.1 MGP_AJ_G0031841.1 mouse_genomes_project 7 23152369 23162054 + MGP_AJ_P0082381 Tmem145 protein_coding protein_coding MGP_AJ_T0082382.1 MGP_AJ_G0031841.1 mouse_genomes_project 7 23152369 23162041 + MGP_AJ_P0082382 Tmem145 protein_coding protein_coding MGP_AJ_T0082383.1 MGP_AJ_G0031841.1 mouse_genomes_project 7 23160898 23162051 + Tmem145 protein_coding retained_intron MGP_AJ_T0102904.1 MGP_AJ_G0040644.1 mouse_genomes_project 7 104582859 104583736 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0082902.1 MGP_AJ_G0031974.1 mouse_genomes_project 7 28257609 28260843 - Zfp82 protein_coding retained_intron MGP_AJ_T0082904.1 MGP_AJ_G0031974.1 mouse_genomes_project 7 28259114 28266843 - Zfp82 protein_coding retained_intron MGP_AJ_T0082905.1 MGP_AJ_G0031974.1 mouse_genomes_project 7 28259116 28277895 - MGP_AJ_P0082905 Zfp82 protein_coding protein_coding MGP_AJ_T0082906.1 MGP_AJ_G0031974.1 mouse_genomes_project 7 28259231 28278647 - MGP_AJ_P0082906 Zfp82 protein_coding protein_coding MGP_AJ_T0082907.1 MGP_AJ_G0031974.1 mouse_genomes_project 7 28260349 28278561 - MGP_AJ_P0082907 Zfp82 protein_coding protein_coding MGP_AJ_T0082908.1 MGP_AJ_G0031974.1 mouse_genomes_project 7 28262291 28278579 - MGP_AJ_P0082908 Zfp82 protein_coding protein_coding MGP_AJ_T0015734.1 MGP_AJ_G0013829.1 mouse_genomes_project 7 15726268 15727794 + processed_pseudogene processed_pseudogene MGP_AJ_T0100144.1 MGP_AJ_G0038110.1 mouse_genomes_project 7 36675199 36675257 - Gm22203 snRNA snRNA MGP_AJ_T0087491.1 MGP_AJ_G0033162.1 mouse_genomes_project 7 141433978 141434969 + MGP_AJ_P0087491 Olfr535 protein_coding protein_coding MGP_AJ_T0005637.1 MGP_AJ_G0004745.1 mouse_genomes_project 7 65701801 65702788 - Gm20684 bidirectional_promoter_lncRNA bidirectional_promoter_lncRNA MGP_AJ_T0085205.1 MGP_AJ_G0032522.1 mouse_genomes_project 7 99592975 99601085 - MGP_AJ_P0085205 Serpinh1 protein_coding unknown_likely_coding MGP_AJ_T0087822.1 MGP_AJ_G0033241.1 mouse_genomes_project 7 143483693 143500645 - MGP_AJ_P0087822 protein_coding protein_coding MGP_AJ_T0087823.1 MGP_AJ_G0033241.1 mouse_genomes_project 7 143485369 143489591 - protein_coding processed_transcript MGP_AJ_T0085932.1 MGP_AJ_G0032837.1 mouse_genomes_project 7 110706005 110709343 - MGP_AJ_P0085932 protein_coding protein_coding MGP_AJ_T0087010.1 MGP_AJ_G0033049.1 mouse_genomes_project 7 128777993 128780920 - MGP_AJ_P0087010 Prss36 protein_coding unknown_likely_coding MGP_AJ_T0087011.1 MGP_AJ_G0033049.1 mouse_genomes_project 7 128778001 128780884 - Prss36 protein_coding processed_transcript MGP_AJ_T0087012.1 MGP_AJ_G0033049.1 mouse_genomes_project 7 128778001 128780844 - Prss36 protein_coding processed_transcript MGP_AJ_T0087013.1 MGP_AJ_G0033049.1 mouse_genomes_project 7 128778001 128792182 - MGP_AJ_P0087013 Prss36 protein_coding protein_coding MGP_AJ_T0087014.1 MGP_AJ_G0033049.1 mouse_genomes_project 7 128778001 128792182 - MGP_AJ_P0087014 Prss36 protein_coding protein_coding MGP_AJ_T0087015.1 MGP_AJ_G0033049.1 mouse_genomes_project 7 128778162 128780815 - MGP_AJ_P0087015 Prss36 protein_coding protein_coding MGP_AJ_T0087016.1 MGP_AJ_G0033049.1 mouse_genomes_project 7 128778265 128780794 - MGP_AJ_P0087016 Prss36 protein_coding protein_coding MGP_AJ_T0087017.1 MGP_AJ_G0033049.1 mouse_genomes_project 7 128778323 128781462 - Prss36 protein_coding retained_intron MGP_AJ_T0087018.1 MGP_AJ_G0033049.1 mouse_genomes_project 7 128778370 128780879 - Prss36 protein_coding processed_transcript MGP_AJ_T0015771.1 MGP_AJ_G0013866.1 mouse_genomes_project 7 30835186 30836179 + processed_pseudogene processed_pseudogene MGP_AJ_T0081908.1 MGP_AJ_G0031695.1 mouse_genomes_project 7 14396568 14405301 - MGP_AJ_P0081908 Calm3 protein_coding protein_coding MGP_AJ_T0081909.1 MGP_AJ_G0031695.1 mouse_genomes_project 7 14396590 14398370 - MGP_AJ_P0081909 Calm3 protein_coding nonsense_mediated_decay MGP_AJ_T0081910.1 MGP_AJ_G0031695.1 mouse_genomes_project 7 14397126 14398408 - MGP_AJ_P0081910 Calm3 protein_coding protein_coding MGP_AJ_T0081911.1 MGP_AJ_G0031695.1 mouse_genomes_project 7 14398348 14405016 - Calm3 protein_coding processed_transcript MGP_AJ_T0102751.1 MGP_AJ_G0040492.1 mouse_genomes_project 7 7769658 7770520 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0002311.1 MGP_AJ_G0002222.1 mouse_genomes_project 7 128500608 128501785 - TEC TEC MGP_AJ_T0087941.1 MGP_AJ_G0033262.1 mouse_genomes_project 7 144654396 144664497 - MGP_AJ_P0087941 Tnfrsf23 protein_coding protein_coding MGP_AJ_T0015762.1 MGP_AJ_G0013857.1 mouse_genomes_project 7 28057311 28057724 - processed_pseudogene processed_pseudogene MGP_AJ_T0015882.1 MGP_AJ_G0013977.1 mouse_genomes_project 7 94409247 94409517 + processed_pseudogene processed_pseudogene MGP_AJ_T0086266.1 MGP_AJ_G0032904.1 mouse_genomes_project 7 120625329 120647569 + MGP_AJ_P0086266 Lyrm1 protein_coding protein_coding MGP_AJ_T0086267.1 MGP_AJ_G0032904.1 mouse_genomes_project 7 120625335 120647100 + MGP_AJ_P0086267 Lyrm1 protein_coding protein_coding MGP_AJ_T0086268.1 MGP_AJ_G0032904.1 mouse_genomes_project 7 120625760 120647565 + MGP_AJ_P0086268 Lyrm1 protein_coding protein_coding MGP_AJ_T0086269.1 MGP_AJ_G0032904.1 mouse_genomes_project 7 120629586 120647571 + MGP_AJ_P0086269 Lyrm1 protein_coding protein_coding MGP_AJ_T0084469.1 MGP_AJ_G0032347.1 mouse_genomes_project 7 73245067 73289433 + MGP_AJ_P0084469 Rgma protein_coding protein_coding MGP_AJ_T0084470.1 MGP_AJ_G0032347.1 mouse_genomes_project 7 73260450 73278771 + MGP_AJ_P0084470 Rgma protein_coding protein_coding MGP_AJ_T0084471.1 MGP_AJ_G0032347.1 mouse_genomes_project 7 73260566 73262538 + Rgma protein_coding retained_intron MGP_AJ_T0102875.1 MGP_AJ_G0040615.1 mouse_genomes_project 7 85773264 85775489 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0101398.1 MGP_AJ_G0039364.1 mouse_genomes_project 7 13397959 13398068 - Snord23 snoRNA snoRNA MGP_AJ_T0085802.1 MGP_AJ_G0032761.1 mouse_genomes_project 7 107508467 107509418 - MGP_AJ_P0085802 protein_coding protein_coding MGP_AJ_T0015804.1 MGP_AJ_G0013899.1 mouse_genomes_project 7 40477621 40479223 - processed_pseudogene processed_pseudogene MGP_AJ_T0005264.1 MGP_AJ_G0004469.1 mouse_genomes_project 7 104689307 104698633 + Gm15133 antisense antisense MGP_AJ_T0005265.1 MGP_AJ_G0004469.1 mouse_genomes_project 7 104689308 104698804 + Gm15133 antisense antisense MGP_AJ_T0102799.1 MGP_AJ_G0040539.1 mouse_genomes_project 7 23882690 23907383 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0081795.1 MGP_AJ_G0031669.1 mouse_genomes_project 7 13532091 13556498 + MGP_AJ_P0081795 Zfp541 protein_coding protein_coding MGP_AJ_T0005143.1 MGP_AJ_G0004384.1 mouse_genomes_project 7 1560010 1563573 + Gm44877 antisense antisense MGP_AJ_T0087925.1 MGP_AJ_G0033258.1 mouse_genomes_project 7 144495906 144531323 - MGP_AJ_P0087925 Nap1l4 protein_coding protein_coding MGP_AJ_T0005210.1 MGP_AJ_G0004432.1 mouse_genomes_project 7 44941443 44942514 - antisense antisense MGP_AJ_T0005296.1 MGP_AJ_G0004492.1 mouse_genomes_project 7 129023407 129025125 - Gm45108 antisense antisense MGP_AJ_T0010934.1 MGP_AJ_G0009056.1 mouse_genomes_project 7 143572202 143572286 - Mir675 miRNA miRNA MGP_AJ_T0086350.1 MGP_AJ_G0032931.1 mouse_genomes_project 7 122832926 122864651 - Ears2 protein_coding retained_intron MGP_AJ_T0086351.1 MGP_AJ_G0032931.1 mouse_genomes_project 7 122834534 122864710 - Ears2 protein_coding retained_intron MGP_AJ_T0086352.1 MGP_AJ_G0032931.1 mouse_genomes_project 7 122834534 122864903 - MGP_AJ_P0086352 Ears2 protein_coding protein_coding MGP_AJ_T0082874.1 MGP_AJ_G0031966.1 mouse_genomes_project 7 28035966 28055319 - MGP_AJ_P0082874 Zfp940 protein_coding protein_coding MGP_AJ_T0082875.1 MGP_AJ_G0031966.1 mouse_genomes_project 7 28044883 28055291 - Zfp940 protein_coding retained_intron MGP_AJ_T0082876.1 MGP_AJ_G0031966.1 mouse_genomes_project 7 28046407 28055336 - MGP_AJ_P0082876 Zfp940 protein_coding unknown_likely_coding MGP_AJ_T0082877.1 MGP_AJ_G0031966.1 mouse_genomes_project 7 28052570 28055092 - Zfp940 protein_coding processed_transcript MGP_AJ_T0084849.1 MGP_AJ_G0032415.1 mouse_genomes_project 7 81886123 81923054 - MGP_AJ_P0084849 Btbd1 protein_coding protein_coding MGP_AJ_T0102809.1 MGP_AJ_G0040549.1 mouse_genomes_project 7 32275697 32277460 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0015921.1 MGP_AJ_G0014016.1 mouse_genomes_project 7 121989031 121989884 - processed_pseudogene processed_pseudogene MGP_AJ_T0015866.1 MGP_AJ_G0013961.1 mouse_genomes_project 7 80473460 80474991 + processed_pseudogene processed_pseudogene MGP_AJ_T0015754.1 MGP_AJ_G0013849.1 mouse_genomes_project 7 23991465 23992219 - processed_pseudogene processed_pseudogene MGP_AJ_T0005232.1 MGP_AJ_G0004448.1 mouse_genomes_project 7 79758150 79759489 + Gm44706 antisense antisense MGP_AJ_T0081723.1 MGP_AJ_G0031638.1 mouse_genomes_project 7 10291468 10303508 - MGP_AJ_P0081723 Mzf1 protein_coding protein_coding MGP_AJ_T0081724.1 MGP_AJ_G0031638.1 mouse_genomes_project 7 10291472 10302442 - MGP_AJ_P0081724 Mzf1 protein_coding protein_coding MGP_AJ_T0081725.1 MGP_AJ_G0031638.1 mouse_genomes_project 7 10291474 10303099 - Mzf1 protein_coding retained_intron MGP_AJ_T0081726.1 MGP_AJ_G0031638.1 mouse_genomes_project 7 10291494 10303272 - MGP_AJ_P0081726 Mzf1 protein_coding protein_coding MGP_AJ_T0081727.1 MGP_AJ_G0031638.1 mouse_genomes_project 7 10296662 10303477 - Mzf1 protein_coding retained_intron MGP_AJ_T0086001.1 MGP_AJ_G0032849.1 mouse_genomes_project 7 112700517 112789910 + MGP_AJ_P0086001 Usp47 protein_coding protein_coding MGP_AJ_T0086002.1 MGP_AJ_G0032849.1 mouse_genomes_project 7 112700719 112789915 + MGP_AJ_P0086002 Usp47 protein_coding unknown_likely_coding MGP_AJ_T0002302.1 MGP_AJ_G0002213.1 mouse_genomes_project 7 123789270 123790263 - TEC TEC MGP_AJ_T0081812.1 MGP_AJ_G0031673.1 mouse_genomes_project 7 13636962 13640702 + MGP_AJ_P0081812 Meis3 protein_coding protein_coding MGP_AJ_T0081813.1 MGP_AJ_G0031673.1 mouse_genomes_project 7 13637011 13640700 + MGP_AJ_P0081813 Meis3 protein_coding protein_coding MGP_AJ_T0081814.1 MGP_AJ_G0031673.1 mouse_genomes_project 7 13637147 13648964 + MGP_AJ_P0081814 Meis3 protein_coding protein_coding MGP_AJ_T0081815.1 MGP_AJ_G0031673.1 mouse_genomes_project 7 13637260 13648961 + Meis3 protein_coding retained_intron MGP_AJ_T0081816.1 MGP_AJ_G0031673.1 mouse_genomes_project 7 13637302 13648964 + MGP_AJ_P0081816 Meis3 protein_coding protein_coding MGP_AJ_T0081817.1 MGP_AJ_G0031673.1 mouse_genomes_project 7 13637302 13648964 + MGP_AJ_P0081817 Meis3 protein_coding nonsense_mediated_decay MGP_AJ_T0081818.1 MGP_AJ_G0031673.1 mouse_genomes_project 7 13639607 13640343 + Meis3 protein_coding retained_intron MGP_AJ_T0081819.1 MGP_AJ_G0031673.1 mouse_genomes_project 7 13640949 13647975 + MGP_AJ_P0081819 Meis3 protein_coding nonsense_mediated_decay MGP_AJ_T0081820.1 MGP_AJ_G0031673.1 mouse_genomes_project 7 13645648 13648964 + Meis3 protein_coding retained_intron MGP_AJ_T0084821.1 MGP_AJ_G0032407.1 mouse_genomes_project 7 81434318 81539104 - MGP_AJ_P0084821 Cpeb1 protein_coding protein_coding MGP_AJ_T0084822.1 MGP_AJ_G0032407.1 mouse_genomes_project 7 81434320 81520171 - MGP_AJ_P0084822 Cpeb1 protein_coding protein_coding MGP_AJ_T0084823.1 MGP_AJ_G0032407.1 mouse_genomes_project 7 81434321 81539104 - MGP_AJ_P0084823 Cpeb1 protein_coding protein_coding MGP_AJ_T0084824.1 MGP_AJ_G0032407.1 mouse_genomes_project 7 81436612 81437802 - Cpeb1 protein_coding retained_intron MGP_AJ_T0084825.1 MGP_AJ_G0032407.1 mouse_genomes_project 7 81436893 81443287 - Cpeb1 protein_coding processed_transcript MGP_AJ_T0084826.1 MGP_AJ_G0032407.1 mouse_genomes_project 7 81449458 81461068 - Cpeb1 protein_coding retained_intron MGP_AJ_T0084827.1 MGP_AJ_G0032407.1 mouse_genomes_project 7 81449458 81539811 - Cpeb1 protein_coding processed_transcript MGP_AJ_T0084828.1 MGP_AJ_G0032407.1 mouse_genomes_project 7 81449622 81461112 - Cpeb1 protein_coding processed_transcript MGP_AJ_T0084829.1 MGP_AJ_G0032407.1 mouse_genomes_project 7 81520017 81539738 - Cpeb1 protein_coding processed_transcript MGP_AJ_T0002281.1 MGP_AJ_G0002192.1 mouse_genomes_project 7 80146062 80147903 - TEC TEC MGP_AJ_T0102810.1 MGP_AJ_G0040550.1 mouse_genomes_project 7 32287793 32289070 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0084375.1 MGP_AJ_G0032327.1 mouse_genomes_project 7 65922802 65932354 + MGP_AJ_P0084375 Vimp protein_coding protein_coding MGP_AJ_T0084376.1 MGP_AJ_G0032327.1 mouse_genomes_project 7 65922830 65930400 + Vimp protein_coding retained_intron MGP_AJ_T0084377.1 MGP_AJ_G0032327.1 mouse_genomes_project 7 65922831 65932352 + MGP_AJ_P0084377 Vimp protein_coding protein_coding MGP_AJ_T0084378.1 MGP_AJ_G0032327.1 mouse_genomes_project 7 65922840 65932071 + MGP_AJ_P0084378 Vimp protein_coding nonsense_mediated_decay MGP_AJ_T0084379.1 MGP_AJ_G0032327.1 mouse_genomes_project 7 65922867 65932361 + MGP_AJ_P0084379 Vimp protein_coding protein_coding MGP_AJ_T0102764.1 MGP_AJ_G0040505.1 mouse_genomes_project 7 9313219 9314495 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0082675.1 MGP_AJ_G0031919.1 mouse_genomes_project 7 26472637 26475275 + MGP_AJ_P0082675 Rps16 protein_coding protein_coding MGP_AJ_T0082676.1 MGP_AJ_G0031919.1 mouse_genomes_project 7 26472748 26475275 + Rps16 protein_coding retained_intron MGP_AJ_T0082677.1 MGP_AJ_G0031919.1 mouse_genomes_project 7 26472909 26475275 + Rps16 protein_coding processed_transcript MGP_AJ_T0015869.1 MGP_AJ_G0013964.1 mouse_genomes_project 7 81241214 81241562 - processed_pseudogene processed_pseudogene MGP_AJ_T0015941.1 MGP_AJ_G0014036.1 mouse_genomes_project 7 128968385 128968732 + processed_pseudogene processed_pseudogene MGP_AJ_T0100149.1 MGP_AJ_G0038115.1 mouse_genomes_project 7 52019114 52019270 - Gm22211 snRNA snRNA MGP_AJ_T0083029.1 MGP_AJ_G0032006.1 mouse_genomes_project 7 28768824 28770878 + U2af1l4 protein_coding processed_transcript MGP_AJ_T0083030.1 MGP_AJ_G0032006.1 mouse_genomes_project 7 28768830 28770649 + U2af1l4 protein_coding processed_transcript MGP_AJ_T0083031.1 MGP_AJ_G0032006.1 mouse_genomes_project 7 28768842 28770005 + MGP_AJ_P0083031 U2af1l4 protein_coding nonsense_mediated_decay MGP_AJ_T0083032.1 MGP_AJ_G0032006.1 mouse_genomes_project 7 28768844 28770889 + MGP_AJ_P0083032 U2af1l4 protein_coding protein_coding MGP_AJ_T0083033.1 MGP_AJ_G0032006.1 mouse_genomes_project 7 28768848 28770886 + MGP_AJ_P0083033 U2af1l4 protein_coding protein_coding MGP_AJ_T0083034.1 MGP_AJ_G0032006.1 mouse_genomes_project 7 28768849 28770131 + U2af1l4 protein_coding retained_intron MGP_AJ_T0083035.1 MGP_AJ_G0032006.1 mouse_genomes_project 7 28768849 28770875 + MGP_AJ_P0083035 U2af1l4 protein_coding protein_coding MGP_AJ_T0083036.1 MGP_AJ_G0032006.1 mouse_genomes_project 7 28768852 28770135 + U2af1l4 protein_coding retained_intron MGP_AJ_T0083037.1 MGP_AJ_G0032006.1 mouse_genomes_project 7 28768853 28770132 + U2af1l4 protein_coding retained_intron MGP_AJ_T0083038.1 MGP_AJ_G0032006.1 mouse_genomes_project 7 28768859 28770684 + MGP_AJ_P0083038 U2af1l4 protein_coding nonsense_mediated_decay MGP_AJ_T0083039.1 MGP_AJ_G0032006.1 mouse_genomes_project 7 28768861 28770322 + MGP_AJ_P0083039 U2af1l4 protein_coding nonsense_mediated_decay MGP_AJ_T0083040.1 MGP_AJ_G0032006.1 mouse_genomes_project 7 28768862 28770688 + MGP_AJ_P0083040 U2af1l4 protein_coding nonsense_mediated_decay MGP_AJ_T0083041.1 MGP_AJ_G0032006.1 mouse_genomes_project 7 28768863 28769583 + U2af1l4 protein_coding retained_intron MGP_AJ_T0083042.1 MGP_AJ_G0032006.1 mouse_genomes_project 7 28768865 28770768 + U2af1l4 protein_coding retained_intron MGP_AJ_T0083043.1 MGP_AJ_G0032006.1 mouse_genomes_project 7 28768867 28773476 + MGP_AJ_P0083043 U2af1l4 protein_coding nonsense_mediated_decay MGP_AJ_T0083044.1 MGP_AJ_G0032006.1 mouse_genomes_project 7 28768867 28770262 + MGP_AJ_P0083044 U2af1l4 protein_coding nonsense_mediated_decay MGP_AJ_T0083045.1 MGP_AJ_G0032006.1 mouse_genomes_project 7 28768869 28770025 + U2af1l4 protein_coding retained_intron MGP_AJ_T0083046.1 MGP_AJ_G0032006.1 mouse_genomes_project 7 28768871 28770888 + MGP_AJ_P0083046 U2af1l4 protein_coding protein_coding MGP_AJ_T0083047.1 MGP_AJ_G0032006.1 mouse_genomes_project 7 28768872 28769582 + U2af1l4 protein_coding retained_intron MGP_AJ_T0083048.1 MGP_AJ_G0032006.1 mouse_genomes_project 7 28768873 28770885 + U2af1l4 protein_coding processed_transcript MGP_AJ_T0083049.1 MGP_AJ_G0032006.1 mouse_genomes_project 7 28768873 28773478 + MGP_AJ_P0083049 U2af1l4 protein_coding nonsense_mediated_decay MGP_AJ_T0083050.1 MGP_AJ_G0032006.1 mouse_genomes_project 7 28768878 28773473 + MGP_AJ_P0083050 U2af1l4 protein_coding nonsense_mediated_decay MGP_AJ_T0083051.1 MGP_AJ_G0032006.1 mouse_genomes_project 7 28768879 28770703 + MGP_AJ_P0083051 U2af1l4 protein_coding protein_coding MGP_AJ_T0083052.1 MGP_AJ_G0032006.1 mouse_genomes_project 7 28768879 28770703 + MGP_AJ_P0083052 U2af1l4 protein_coding protein_coding MGP_AJ_T0083053.1 MGP_AJ_G0032006.1 mouse_genomes_project 7 28768879 28770703 + MGP_AJ_P0083053 U2af1l4 protein_coding protein_coding MGP_AJ_T0083054.1 MGP_AJ_G0032006.1 mouse_genomes_project 7 28768879 28770703 + MGP_AJ_P0083054 U2af1l4 protein_coding nonsense_mediated_decay MGP_AJ_T0083055.1 MGP_AJ_G0032006.1 mouse_genomes_project 7 28768881 28770883 + U2af1l4 protein_coding processed_transcript MGP_AJ_T0083056.1 MGP_AJ_G0032006.1 mouse_genomes_project 7 28768881 28770072 + MGP_AJ_P0083056 U2af1l4 protein_coding protein_coding MGP_AJ_T0083057.1 MGP_AJ_G0032006.1 mouse_genomes_project 7 28768882 28772917 + U2af1l4 protein_coding retained_intron MGP_AJ_T0083058.1 MGP_AJ_G0032006.1 mouse_genomes_project 7 28768883 28770000 + U2af1l4 protein_coding retained_intron MGP_AJ_T0083059.1 MGP_AJ_G0032006.1 mouse_genomes_project 7 28768890 28770696 + U2af1l4 protein_coding processed_transcript MGP_AJ_T0083060.1 MGP_AJ_G0032006.1 mouse_genomes_project 7 28768901 28770888 + U2af1l4 protein_coding retained_intron MGP_AJ_T0083061.1 MGP_AJ_G0032006.1 mouse_genomes_project 7 28768916 28769879 + U2af1l4 protein_coding retained_intron MGP_AJ_T0083062.1 MGP_AJ_G0032006.1 mouse_genomes_project 7 28768918 28770703 + MGP_AJ_P0083062 U2af1l4 protein_coding nonsense_mediated_decay MGP_AJ_T0083063.1 MGP_AJ_G0032006.1 mouse_genomes_project 7 28768920 28770703 + MGP_AJ_P0083063 U2af1l4 protein_coding nonsense_mediated_decay MGP_AJ_T0083064.1 MGP_AJ_G0032006.1 mouse_genomes_project 7 28769349 28770131 + U2af1l4 protein_coding retained_intron MGP_AJ_T0083065.1 MGP_AJ_G0032006.1 mouse_genomes_project 7 28769394 28769802 + U2af1l4 protein_coding processed_transcript MGP_AJ_T0083066.1 MGP_AJ_G0032006.1 mouse_genomes_project 7 28769402 28770703 + MGP_AJ_P0083066 U2af1l4 protein_coding protein_coding MGP_AJ_T0081390.1 MGP_AJ_G0031516.1 mouse_genomes_project 7 1261294 1270869 + MGP_AJ_P0081390 Ncr1 protein_coding protein_coding MGP_AJ_T0081391.1 MGP_AJ_G0031516.1 mouse_genomes_project 7 1261339 1270869 + MGP_AJ_P0081391 Ncr1 protein_coding protein_coding MGP_AJ_T0083745.1 MGP_AJ_G0032161.1 mouse_genomes_project 7 44220683 44226029 + MGP_AJ_P0083745 Pnkp protein_coding protein_coding MGP_AJ_T0083746.1 MGP_AJ_G0032161.1 mouse_genomes_project 7 44220695 44221050 + MGP_AJ_P0083746 Pnkp protein_coding protein_coding MGP_AJ_T0083747.1 MGP_AJ_G0032161.1 mouse_genomes_project 7 44220703 44226371 + MGP_AJ_P0083747 Pnkp protein_coding protein_coding MGP_AJ_T0083748.1 MGP_AJ_G0032161.1 mouse_genomes_project 7 44220711 44226035 + Pnkp protein_coding retained_intron MGP_AJ_T0083749.1 MGP_AJ_G0032161.1 mouse_genomes_project 7 44220717 44224043 + MGP_AJ_P0083749 Pnkp protein_coding nonsense_mediated_decay MGP_AJ_T0083750.1 MGP_AJ_G0032161.1 mouse_genomes_project 7 44220884 44224970 + MGP_AJ_P0083750 Pnkp protein_coding nonsense_mediated_decay MGP_AJ_T0083751.1 MGP_AJ_G0032161.1 mouse_genomes_project 7 44220886 44226028 + MGP_AJ_P0083751 Pnkp protein_coding protein_coding MGP_AJ_T0083752.1 MGP_AJ_G0032161.1 mouse_genomes_project 7 44220892 44226029 + MGP_AJ_P0083752 Pnkp protein_coding nonsense_mediated_decay MGP_AJ_T0083753.1 MGP_AJ_G0032161.1 mouse_genomes_project 7 44220923 44226020 + MGP_AJ_P0083753 Pnkp protein_coding nonsense_mediated_decay MGP_AJ_T0083754.1 MGP_AJ_G0032161.1 mouse_genomes_project 7 44220938 44226029 + MGP_AJ_P0083754 Pnkp protein_coding nonsense_mediated_decay MGP_AJ_T0083755.1 MGP_AJ_G0032161.1 mouse_genomes_project 7 44223289 44226027 + Pnkp protein_coding retained_intron MGP_AJ_T0083756.1 MGP_AJ_G0032161.1 mouse_genomes_project 7 44224041 44224988 + Pnkp protein_coding retained_intron MGP_AJ_T0083757.1 MGP_AJ_G0032161.1 mouse_genomes_project 7 44224993 44226029 + MGP_AJ_P0083757 Pnkp protein_coding non_stop_decay MGP_AJ_T0083758.1 MGP_AJ_G0032161.1 mouse_genomes_project 7 44225132 44226027 + MGP_AJ_P0083758 Pnkp protein_coding protein_coding MGP_AJ_T0083759.1 MGP_AJ_G0032161.1 mouse_genomes_project 7 44225315 44226049 + Pnkp protein_coding retained_intron MGP_AJ_T0083086.1 MGP_AJ_G0032014.1 mouse_genomes_project 7 28860736 28872254 - MGP_AJ_P0083086 Haus5 protein_coding unknown_likely_coding MGP_AJ_T0083087.1 MGP_AJ_G0032014.1 mouse_genomes_project 7 28861036 28872259 - MGP_AJ_P0083087 Haus5 protein_coding nonsense_mediated_decay MGP_AJ_T0083088.1 MGP_AJ_G0032014.1 mouse_genomes_project 7 28861041 28872320 - MGP_AJ_P0083088 Haus5 protein_coding protein_coding MGP_AJ_T0083089.1 MGP_AJ_G0032014.1 mouse_genomes_project 7 28861263 28864338 - Haus5 protein_coding retained_intron MGP_AJ_T0083090.1 MGP_AJ_G0032014.1 mouse_genomes_project 7 28864894 28866296 - Haus5 protein_coding retained_intron MGP_AJ_T0083091.1 MGP_AJ_G0032014.1 mouse_genomes_project 7 28865422 28872286 - Haus5 protein_coding retained_intron MGP_AJ_T0083092.1 MGP_AJ_G0032014.1 mouse_genomes_project 7 28866180 28868197 - Haus5 protein_coding retained_intron MGP_AJ_T0102872.1 MGP_AJ_G0040612.1 mouse_genomes_project 7 85583813 85586510 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0084120.1 MGP_AJ_G0032274.1 mouse_genomes_project 7 48741653 48759269 - MGP_AJ_P0084120 Csrp3 protein_coding protein_coding MGP_AJ_T0084121.1 MGP_AJ_G0032274.1 mouse_genomes_project 7 48741653 48754889 - MGP_AJ_P0084121 Csrp3 protein_coding protein_coding MGP_AJ_T0100186.1 MGP_AJ_G0038152.1 mouse_genomes_project 7 127741484 127741591 - Gm23445 snRNA snRNA MGP_AJ_T0002309.1 MGP_AJ_G0002220.1 mouse_genomes_project 7 128107196 128109248 + TEC TEC MGP_AJ_T0087514.1 MGP_AJ_G0033178.1 mouse_genomes_project 7 141841044 141847818 + MGP_AJ_P0087514 Ric8a protein_coding protein_coding MGP_AJ_T0087515.1 MGP_AJ_G0033178.1 mouse_genomes_project 7 141841402 141842430 + Ric8a protein_coding retained_intron MGP_AJ_T0087516.1 MGP_AJ_G0033178.1 mouse_genomes_project 7 141841509 141842646 + Ric8a protein_coding processed_transcript MGP_AJ_T0087517.1 MGP_AJ_G0033178.1 mouse_genomes_project 7 141841529 141842630 + Ric8a protein_coding processed_transcript MGP_AJ_T0087518.1 MGP_AJ_G0033178.1 mouse_genomes_project 7 141841786 141847047 + Ric8a protein_coding retained_intron MGP_AJ_T0087519.1 MGP_AJ_G0033178.1 mouse_genomes_project 7 141842249 141843822 + Ric8a protein_coding processed_transcript MGP_AJ_T0087520.1 MGP_AJ_G0033178.1 mouse_genomes_project 7 141844729 141847231 + Ric8a protein_coding retained_intron MGP_AJ_T0087521.1 MGP_AJ_G0033178.1 mouse_genomes_project 7 141845260 141846707 + Ric8a protein_coding retained_intron MGP_AJ_T0083245.1 MGP_AJ_G0032042.1 mouse_genomes_project 7 29534008 29535311 - MGP_AJ_P0083245 Scgb1b2 protein_coding protein_coding MGP_AJ_T0002283.1 MGP_AJ_G0002194.1 mouse_genomes_project 7 80653905 80654455 - TEC TEC MGP_AJ_T0102770.1 MGP_AJ_G0040511.1 mouse_genomes_project 7 9632797 9633196 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0085159.1 MGP_AJ_G0032512.1 mouse_genomes_project 7 98580749 98591373 - MGP_AJ_P0085159 Tsku protein_coding protein_coding MGP_AJ_T0085160.1 MGP_AJ_G0032512.1 mouse_genomes_project 7 98580749 98591413 - MGP_AJ_P0085160 Tsku protein_coding protein_coding MGP_AJ_T0085161.1 MGP_AJ_G0032512.1 mouse_genomes_project 7 98580749 98591373 - MGP_AJ_P0085161 Tsku protein_coding protein_coding MGP_AJ_T0085162.1 MGP_AJ_G0032512.1 mouse_genomes_project 7 98580749 98591377 - MGP_AJ_P0085162 Tsku protein_coding protein_coding MGP_AJ_T0085163.1 MGP_AJ_G0032512.1 mouse_genomes_project 7 98580867 98590164 - MGP_AJ_P0085163 Tsku protein_coding protein_coding MGP_AJ_T0085164.1 MGP_AJ_G0032512.1 mouse_genomes_project 7 98580867 98590164 - MGP_AJ_P0085164 Tsku protein_coding protein_coding MGP_AJ_T0085165.1 MGP_AJ_G0032512.1 mouse_genomes_project 7 98580949 98591373 - MGP_AJ_P0085165 Tsku protein_coding protein_coding MGP_AJ_T0085166.1 MGP_AJ_G0032512.1 mouse_genomes_project 7 98583626 98590272 - Tsku protein_coding processed_transcript MGP_AJ_T0085572.1 MGP_AJ_G0032650.1 mouse_genomes_project 7 104125845 104126796 + MGP_AJ_P0085572 Olfr628 protein_coding protein_coding MGP_AJ_T0100155.1 MGP_AJ_G0038121.1 mouse_genomes_project 7 65961929 65962030 - Gm23042 snRNA snRNA MGP_AJ_T0084099.1 MGP_AJ_G0032259.1 mouse_genomes_project 7 46478519 46482668 + MGP_AJ_P0084099 Tmem86a protein_coding protein_coding MGP_AJ_T0086980.1 MGP_AJ_G0033041.1 mouse_genomes_project 7 128707324 128720996 - MGP_AJ_P0086980 Zfp668 protein_coding protein_coding MGP_AJ_T0086981.1 MGP_AJ_G0033041.1 mouse_genomes_project 7 128709994 128720948 - MGP_AJ_P0086981 Zfp668 protein_coding protein_coding MGP_AJ_T0086982.1 MGP_AJ_G0033041.1 mouse_genomes_project 7 128710270 128719814 - MGP_AJ_P0086982 Zfp668 protein_coding protein_coding MGP_AJ_T0086983.1 MGP_AJ_G0033041.1 mouse_genomes_project 7 128710270 128720945 - MGP_AJ_P0086983 Zfp668 protein_coding protein_coding MGP_AJ_T0086984.1 MGP_AJ_G0033041.1 mouse_genomes_project 7 128712318 128719825 - MGP_AJ_P0086984 Zfp668 protein_coding protein_coding MGP_AJ_T0086985.1 MGP_AJ_G0033041.1 mouse_genomes_project 7 128717940 128720302 - Zfp668 protein_coding processed_transcript MGP_AJ_T0010848.1 MGP_AJ_G0008970.1 mouse_genomes_project 7 25221502 25221622 + Mir1191 miRNA miRNA MGP_AJ_T0082770.1 MGP_AJ_G0031942.1 mouse_genomes_project 7 26985214 26994193 + MGP_AJ_P0082770 Lgals4 protein_coding protein_coding MGP_AJ_T0082771.1 MGP_AJ_G0031942.1 mouse_genomes_project 7 26985516 26987209 + Lgals4 protein_coding retained_intron MGP_AJ_T0082772.1 MGP_AJ_G0031942.1 mouse_genomes_project 7 26985547 26989423 + Lgals4 protein_coding retained_intron MGP_AJ_T0082773.1 MGP_AJ_G0031942.1 mouse_genomes_project 7 26985883 26992563 + MGP_AJ_P0082773 Lgals4 protein_coding nonsense_mediated_decay MGP_AJ_T0082774.1 MGP_AJ_G0031942.1 mouse_genomes_project 7 26987291 26994186 + Lgals4 protein_coding retained_intron MGP_AJ_T0082775.1 MGP_AJ_G0031942.1 mouse_genomes_project 7 26992354 26994188 + Lgals4 protein_coding retained_intron MGP_AJ_T0085715.1 MGP_AJ_G0032737.1 mouse_genomes_project 7 106014336 106043397 - MGP_AJ_P0085715 Trim3 protein_coding protein_coding MGP_AJ_T0085716.1 MGP_AJ_G0032737.1 mouse_genomes_project 7 106020370 106043449 - MGP_AJ_P0085716 Trim3 protein_coding protein_coding MGP_AJ_T0085717.1 MGP_AJ_G0032737.1 mouse_genomes_project 7 106020548 106043426 - MGP_AJ_P0085717 Trim3 protein_coding protein_coding MGP_AJ_T0085718.1 MGP_AJ_G0032737.1 mouse_genomes_project 7 106021039 106021757 - Trim3 protein_coding retained_intron MGP_AJ_T0085719.1 MGP_AJ_G0032737.1 mouse_genomes_project 7 106022208 106023306 - Trim3 protein_coding retained_intron MGP_AJ_T0085720.1 MGP_AJ_G0032737.1 mouse_genomes_project 7 106026931 106027927 - Trim3 protein_coding retained_intron MGP_AJ_T0085721.1 MGP_AJ_G0032737.1 mouse_genomes_project 7 106028684 106043414 - MGP_AJ_P0085721 Trim3 protein_coding protein_coding MGP_AJ_T0085722.1 MGP_AJ_G0032737.1 mouse_genomes_project 7 106029006 106043460 - Trim3 protein_coding processed_transcript MGP_AJ_T0085723.1 MGP_AJ_G0032737.1 mouse_genomes_project 7 106029283 106043374 - MGP_AJ_P0085723 Trim3 protein_coding protein_coding MGP_AJ_T0084938.1 MGP_AJ_G0032448.1 mouse_genomes_project 7 86542475 86543435 - MGP_AJ_P0084938 Olfr305 protein_coding protein_coding MGP_AJ_T0100142.1 MGP_AJ_G0038108.1 mouse_genomes_project 7 28567504 28567695 - Gm25259 snRNA snRNA MGP_AJ_T0015733.1 MGP_AJ_G0013828.1 mouse_genomes_project 7 15533809 15534508 + processed_pseudogene processed_pseudogene MGP_AJ_T0084837.1 MGP_AJ_G0032410.1 mouse_genomes_project 7 81621166 81656998 - MGP_AJ_P0084837 Fsd2 protein_coding protein_coding MGP_AJ_T0081450.1 MGP_AJ_G0031525.1 mouse_genomes_project 7 1468476 1533726 - MGP_AJ_P0081450 Ptprh protein_coding protein_coding MGP_AJ_T0081451.1 MGP_AJ_G0031525.1 mouse_genomes_project 7 1468817 1534626 - MGP_AJ_P0081451 Ptprh protein_coding protein_coding MGP_AJ_T0081452.1 MGP_AJ_G0031525.1 mouse_genomes_project 7 1472441 1483026 - Ptprh protein_coding retained_intron MGP_AJ_T0081453.1 MGP_AJ_G0031525.1 mouse_genomes_project 7 1514588 1533724 - Ptprh protein_coding processed_transcript MGP_AJ_T0018437.1 MGP_AJ_G0015679.1 mouse_genomes_project 7 142924830 142925626 - processed_transcript processed_transcript MGP_AJ_T0015945.1 MGP_AJ_G0014040.1 mouse_genomes_project 7 129557633 129558083 + processed_pseudogene processed_pseudogene MGP_AJ_T0011693.1 MGP_AJ_G0009815.1 mouse_genomes_project 7 103652476 103653300 + Gm23973 misc_RNA misc_RNA MGP_AJ_T0018411.1 MGP_AJ_G0015665.1 mouse_genomes_project 7 118978547 118980244 + 4930583K01Rik processed_transcript processed_transcript MGP_AJ_T0084102.1 MGP_AJ_G0032261.1 mouse_genomes_project 7 46616159 46634528 - MGP_AJ_P0084102 Mrgpra6 protein_coding protein_coding MGP_AJ_T0085625.1 MGP_AJ_G0032687.1 mouse_genomes_project 7 104673997 104689788 - MGP_AJ_P0085625 protein_coding protein_coding MGP_AJ_T0085629.1 MGP_AJ_G0032687.1 mouse_genomes_project 7 104680001 104689775 - MGP_AJ_P0085629 protein_coding protein_coding MGP_AJ_T0084909.1 MGP_AJ_G0032432.1 mouse_genomes_project 7 83977857 83991330 + Mesdc2 protein_coding processed_transcript MGP_AJ_T0084910.1 MGP_AJ_G0032432.1 mouse_genomes_project 7 83985387 83994909 + MGP_AJ_P0084910 Mesdc2 protein_coding protein_coding MGP_AJ_T0084911.1 MGP_AJ_G0032432.1 mouse_genomes_project 7 83985389 83991157 + MGP_AJ_P0084911 Mesdc2 protein_coding protein_coding MGP_AJ_T0084912.1 MGP_AJ_G0032432.1 mouse_genomes_project 7 83985717 83991470 + MGP_AJ_P0084912 Mesdc2 protein_coding nonsense_mediated_decay MGP_AJ_T0081768.1 MGP_AJ_G0031655.1 mouse_genomes_project 7 11475372 11507279 - MGP_AJ_P0081768 Sult2a6 protein_coding protein_coding MGP_AJ_T0081769.1 MGP_AJ_G0031655.1 mouse_genomes_project 7 11475380 11507279 - MGP_AJ_P0081769 Sult2a6 protein_coding protein_coding MGP_AJ_T0081651.1 MGP_AJ_G0031615.1 mouse_genomes_project 7 9542628 9543546 + MGP_AJ_P0081651 Vmn1r82 protein_coding protein_coding MGP_AJ_T0081652.1 MGP_AJ_G0031615.1 mouse_genomes_project 7 9542631 9543546 + MGP_AJ_P0081652 Vmn1r82 protein_coding protein_coding MGP_AJ_T0087340.1 MGP_AJ_G0033111.1 mouse_genomes_project 7 135600293 136114941 + MGP_AJ_P0087340 Dock1 protein_coding protein_coding MGP_AJ_T0081640.1 MGP_AJ_G0031604.1 mouse_genomes_project 7 7858118 7860158 - MGP_AJ_P0081640 Vmn1r71 protein_coding protein_coding MGP_AJ_T0009049.1 MGP_AJ_G0007281.1 mouse_genomes_project 7 130661187 130681645 + Gm44778 lincRNA lincRNA MGP_AJ_T0083940.1 MGP_AJ_G0032217.1 mouse_genomes_project 7 45073051 45090383 - MGP_AJ_P0083940 Sec1 protein_coding protein_coding MGP_AJ_T0082818.1 MGP_AJ_G0031951.1 mouse_genomes_project 7 27325925 27333894 - MGP_AJ_P0082818 Spred3 protein_coding unknown_likely_coding MGP_AJ_T0082819.1 MGP_AJ_G0031951.1 mouse_genomes_project 7 27330300 27334282 - Spred3 protein_coding retained_intron MGP_AJ_T0085563.1 MGP_AJ_G0032641.1 mouse_genomes_project 7 103966846 103967788 + MGP_AJ_P0085563 Olfr615 protein_coding protein_coding MGP_AJ_T0087290.1 MGP_AJ_G0033103.1 mouse_genomes_project 7 134558080 134593505 + MGP_AJ_P0087290 Edrf1 protein_coding protein_coding MGP_AJ_T0087291.1 MGP_AJ_G0033103.1 mouse_genomes_project 7 134558230 134592713 + MGP_AJ_P0087291 Edrf1 protein_coding protein_coding MGP_AJ_T0087292.1 MGP_AJ_G0033103.1 mouse_genomes_project 7 134558398 134559883 + Edrf1 protein_coding retained_intron MGP_AJ_T0087293.1 MGP_AJ_G0033103.1 mouse_genomes_project 7 134577638 134582415 + MGP_AJ_P0087293 Edrf1 protein_coding nonsense_mediated_decay MGP_AJ_T0087294.1 MGP_AJ_G0033103.1 mouse_genomes_project 7 134586459 134592463 + MGP_AJ_P0087294 Edrf1 protein_coding protein_coding MGP_AJ_T0087295.1 MGP_AJ_G0033103.1 mouse_genomes_project 7 134587739 134592004 + Edrf1 protein_coding retained_intron MGP_AJ_T0102761.1 MGP_AJ_G0040502.1 mouse_genomes_project 7 9258082 9259456 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0005237.1 MGP_AJ_G0004451.1 mouse_genomes_project 7 80124196 80125656 - Gm44949 antisense antisense MGP_AJ_T0009057.1 MGP_AJ_G0007287.1 mouse_genomes_project 7 134546480 134547857 - Gm28747 lincRNA lincRNA MGP_AJ_T0009029.1 MGP_AJ_G0007269.1 mouse_genomes_project 7 127663172 127672212 + Gm44854 lincRNA lincRNA MGP_AJ_T0010931.1 MGP_AJ_G0009053.1 mouse_genomes_project 7 142211976 142212086 - Mir210 miRNA miRNA MGP_AJ_T0085620.1 MGP_AJ_G0032686.1 mouse_genomes_project 7 104660734 104672153 + MGP_AJ_P0085620 protein_coding protein_coding MGP_AJ_T0085623.1 MGP_AJ_G0032686.1 mouse_genomes_project 7 104663911 104671861 + MGP_AJ_P0085623 protein_coding protein_coding MGP_AJ_T0085624.1 MGP_AJ_G0032686.1 mouse_genomes_project 7 104663911 104671861 + MGP_AJ_P0085624 protein_coding protein_coding MGP_AJ_T0102847.1 MGP_AJ_G0040587.1 mouse_genomes_project 7 47759077 47882753 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0082168.1 MGP_AJ_G0031779.1 mouse_genomes_project 7 17614894 17615695 + MGP_AJ_P0082168 protein_coding protein_coding MGP_AJ_T0082105.1 MGP_AJ_G0031762.1 mouse_genomes_project 7 17228473 17253924 - MGP_AJ_P0082105 Clasrp protein_coding protein_coding MGP_AJ_T0015846.1 MGP_AJ_G0013941.1 mouse_genomes_project 7 65013042 65013616 - processed_pseudogene processed_pseudogene MGP_AJ_T0086283.1 MGP_AJ_G0032911.1 mouse_genomes_project 7 121069519 121103947 + Abca15 protein_coding retained_intron MGP_AJ_T0086284.1 MGP_AJ_G0032911.1 mouse_genomes_project 7 121069519 121151507 + MGP_AJ_P0086284 Abca15 protein_coding protein_coding MGP_AJ_T0086285.1 MGP_AJ_G0032911.1 mouse_genomes_project 7 121069519 121151507 + MGP_AJ_P0086285 Abca15 protein_coding protein_coding MGP_AJ_T0102868.1 MGP_AJ_G0040608.1 mouse_genomes_project 7 85360028 85361480 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0102780.1 MGP_AJ_G0040521.1 mouse_genomes_project 7 11806286 11806806 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0015851.1 MGP_AJ_G0013946.1 mouse_genomes_project 7 69467512 69468511 - processed_pseudogene processed_pseudogene MGP_AJ_T0011680.1 MGP_AJ_G0009802.1 mouse_genomes_project 7 13405455 13405703 + Gm24576 misc_RNA misc_RNA MGP_AJ_T0082484.1 MGP_AJ_G0031867.1 mouse_genomes_project 7 24470543 24521500 + MGP_AJ_P0082484 Nlrp9a protein_coding protein_coding MGP_AJ_T0082485.1 MGP_AJ_G0031867.1 mouse_genomes_project 7 24470585 24521496 + MGP_AJ_P0082485 Nlrp9a protein_coding protein_coding MGP_AJ_T0082486.1 MGP_AJ_G0031867.1 mouse_genomes_project 7 24470586 24506063 + MGP_AJ_P0082486 Nlrp9a protein_coding protein_coding MGP_AJ_T0082487.1 MGP_AJ_G0031867.1 mouse_genomes_project 7 24470591 24503057 + Nlrp9a protein_coding processed_transcript MGP_AJ_T0082488.1 MGP_AJ_G0031867.1 mouse_genomes_project 7 24488068 24522968 + MGP_AJ_P0082488 Nlrp9a protein_coding protein_coding MGP_AJ_T0082489.1 MGP_AJ_G0031867.1 mouse_genomes_project 7 24488068 24521305 + MGP_AJ_P0082489 Nlrp9a protein_coding protein_coding MGP_AJ_T0018405.1 MGP_AJ_G0015661.1 mouse_genomes_project 7 101616992 101626091 - Gm20476 processed_transcript processed_transcript MGP_AJ_T0084366.1 MGP_AJ_G0032326.1 mouse_genomes_project 7 65902121 65917497 + Snrpa1 protein_coding processed_transcript MGP_AJ_T0084367.1 MGP_AJ_G0032326.1 mouse_genomes_project 7 65903418 65912662 + Snrpa1 protein_coding processed_transcript MGP_AJ_T0084368.1 MGP_AJ_G0032326.1 mouse_genomes_project 7 65903457 65917741 + MGP_AJ_P0084368 Snrpa1 protein_coding protein_coding MGP_AJ_T0084369.1 MGP_AJ_G0032326.1 mouse_genomes_project 7 65903651 65917530 + Snrpa1 protein_coding processed_transcript MGP_AJ_T0084370.1 MGP_AJ_G0032326.1 mouse_genomes_project 7 65903663 65917734 + MGP_AJ_P0084370 Snrpa1 protein_coding nonsense_mediated_decay MGP_AJ_T0084371.1 MGP_AJ_G0032326.1 mouse_genomes_project 7 65903683 65914745 + Snrpa1 protein_coding retained_intron MGP_AJ_T0084372.1 MGP_AJ_G0032326.1 mouse_genomes_project 7 65903722 65917524 + Snrpa1 protein_coding processed_transcript MGP_AJ_T0084373.1 MGP_AJ_G0032326.1 mouse_genomes_project 7 65903900 65905286 + Snrpa1 protein_coding processed_transcript MGP_AJ_T0084374.1 MGP_AJ_G0032326.1 mouse_genomes_project 7 65911987 65912659 + Snrpa1 protein_coding retained_intron MGP_AJ_T0085933.1 MGP_AJ_G0032838.1 mouse_genomes_project 7 110709719 110743183 + MGP_AJ_P0085933 Zfp143 protein_coding protein_coding MGP_AJ_T0085934.1 MGP_AJ_G0032838.1 mouse_genomes_project 7 110709727 110743178 + MGP_AJ_P0085934 Zfp143 protein_coding protein_coding MGP_AJ_T0087242.1 MGP_AJ_G0033096.1 mouse_genomes_project 7 133530407 133549845 + Lhpp protein_coding processed_transcript MGP_AJ_T0087243.1 MGP_AJ_G0033096.1 mouse_genomes_project 7 133530408 133625531 + MGP_AJ_P0087243 Lhpp protein_coding protein_coding MGP_AJ_T0087244.1 MGP_AJ_G0033096.1 mouse_genomes_project 7 133530436 133589827 + Lhpp protein_coding processed_transcript MGP_AJ_T0087245.1 MGP_AJ_G0033096.1 mouse_genomes_project 7 133530477 133624888 + Lhpp protein_coding processed_transcript MGP_AJ_T0087246.1 MGP_AJ_G0033096.1 mouse_genomes_project 7 133549589 133560786 + Lhpp protein_coding retained_intron MGP_AJ_T0087659.1 MGP_AJ_G0033210.1 mouse_genomes_project 7 142420353 142423334 - MGP_AJ_P0087659 Cend1 protein_coding protein_coding MGP_AJ_T0087660.1 MGP_AJ_G0033210.1 mouse_genomes_project 7 142420353 142423400 - MGP_AJ_P0087660 Cend1 protein_coding protein_coding MGP_AJ_T0087661.1 MGP_AJ_G0033210.1 mouse_genomes_project 7 142420358 142423327 - MGP_AJ_P0087661 Cend1 protein_coding protein_coding MGP_AJ_T0087662.1 MGP_AJ_G0033210.1 mouse_genomes_project 7 142420358 142423260 - MGP_AJ_P0087662 Cend1 protein_coding protein_coding MGP_AJ_T0081913.1 MGP_AJ_G0031697.1 mouse_genomes_project 7 14440583 14445499 + MGP_AJ_P0081913 Pnmal1 protein_coding protein_coding MGP_AJ_T0085200.1 MGP_AJ_G0032521.1 mouse_genomes_project 7 99517372 99584748 + MGP_AJ_P0085200 Map6 protein_coding protein_coding MGP_AJ_T0085201.1 MGP_AJ_G0032521.1 mouse_genomes_project 7 99517372 99584748 + MGP_AJ_P0085201 Map6 protein_coding protein_coding MGP_AJ_T0085202.1 MGP_AJ_G0032521.1 mouse_genomes_project 7 99517414 99568160 + Map6 protein_coding retained_intron MGP_AJ_T0085203.1 MGP_AJ_G0032521.1 mouse_genomes_project 7 99518271 99584749 + MGP_AJ_P0085203 Map6 protein_coding protein_coding MGP_AJ_T0085204.1 MGP_AJ_G0032521.1 mouse_genomes_project 7 99569007 99570263 + Map6 protein_coding processed_transcript MGP_AJ_T0087296.1 MGP_AJ_G0033104.1 mouse_genomes_project 7 134594803 134600547 - Mmp21 protein_coding retained_intron MGP_AJ_T0087297.1 MGP_AJ_G0033104.1 mouse_genomes_project 7 134594803 134600547 - MGP_AJ_P0087297 Mmp21 protein_coding protein_coding MGP_AJ_T0087298.1 MGP_AJ_G0033104.1 mouse_genomes_project 7 134594889 134600547 - MGP_AJ_P0087298 Mmp21 protein_coding protein_coding MGP_AJ_T0084200.1 MGP_AJ_G0032292.1 mouse_genomes_project 7 55788266 55839850 + Cyfip1 protein_coding retained_intron MGP_AJ_T0084201.1 MGP_AJ_G0032292.1 mouse_genomes_project 7 55788591 55892221 + MGP_AJ_P0084201 Cyfip1 protein_coding protein_coding MGP_AJ_T0084202.1 MGP_AJ_G0032292.1 mouse_genomes_project 7 55788592 55824986 + MGP_AJ_P0084202 Cyfip1 protein_coding protein_coding MGP_AJ_T0084203.1 MGP_AJ_G0032292.1 mouse_genomes_project 7 55788726 55890118 + MGP_AJ_P0084203 Cyfip1 protein_coding protein_coding MGP_AJ_T0084204.1 MGP_AJ_G0032292.1 mouse_genomes_project 7 55788770 55885417 + Cyfip1 protein_coding retained_intron MGP_AJ_T0084205.1 MGP_AJ_G0032292.1 mouse_genomes_project 7 55788775 55890091 + MGP_AJ_P0084205 Cyfip1 protein_coding protein_coding MGP_AJ_T0084206.1 MGP_AJ_G0032292.1 mouse_genomes_project 7 55818914 55883591 + MGP_AJ_P0084206 Cyfip1 protein_coding protein_coding MGP_AJ_T0084207.1 MGP_AJ_G0032292.1 mouse_genomes_project 7 55844464 55848452 + Cyfip1 protein_coding retained_intron MGP_AJ_T0084208.1 MGP_AJ_G0032292.1 mouse_genomes_project 7 55844793 55890118 + Cyfip1 protein_coding retained_intron MGP_AJ_T0084209.1 MGP_AJ_G0032292.1 mouse_genomes_project 7 55845538 55863899 + Cyfip1 protein_coding retained_intron MGP_AJ_T0084210.1 MGP_AJ_G0032292.1 mouse_genomes_project 7 55868005 55873350 + Cyfip1 protein_coding retained_intron MGP_AJ_T0084211.1 MGP_AJ_G0032292.1 mouse_genomes_project 7 55888503 55890091 + Cyfip1 protein_coding retained_intron MGP_AJ_T0005197.1 MGP_AJ_G0004424.1 mouse_genomes_project 7 34021316 34022885 + B230322F03Rik antisense antisense MGP_AJ_T0081537.1 MGP_AJ_G0031548.1 mouse_genomes_project 7 1970249 1977540 - MGP_AJ_P0081537 Fiz1 protein_coding protein_coding MGP_AJ_T0081538.1 MGP_AJ_G0031548.1 mouse_genomes_project 7 1970249 1976533 - MGP_AJ_P0081538 Fiz1 protein_coding protein_coding MGP_AJ_T0081539.1 MGP_AJ_G0031548.1 mouse_genomes_project 7 1970249 1977984 - MGP_AJ_P0081539 Fiz1 protein_coding protein_coding MGP_AJ_T0086946.1 MGP_AJ_G0033035.1 mouse_genomes_project 7 128608685 128614373 + MGP_AJ_P0086946 Orai3 protein_coding protein_coding MGP_AJ_T0086947.1 MGP_AJ_G0033035.1 mouse_genomes_project 7 128608685 128614373 + MGP_AJ_P0086947 Orai3 protein_coding protein_coding MGP_AJ_T0086948.1 MGP_AJ_G0033035.1 mouse_genomes_project 7 128608685 128613914 + MGP_AJ_P0086948 Orai3 protein_coding protein_coding MGP_AJ_T0082153.1 MGP_AJ_G0031773.1 mouse_genomes_project 7 17459079 17461739 - MGP_AJ_P0082153 Bcl3 protein_coding protein_coding MGP_AJ_T0082154.1 MGP_AJ_G0031773.1 mouse_genomes_project 7 17459079 17473387 - MGP_AJ_P0082154 Bcl3 protein_coding protein_coding MGP_AJ_T0082155.1 MGP_AJ_G0031773.1 mouse_genomes_project 7 17461734 17462507 - Bcl3 protein_coding retained_intron MGP_AJ_T0082156.1 MGP_AJ_G0031773.1 mouse_genomes_project 7 17461966 17463451 - Bcl3 protein_coding retained_intron MGP_AJ_T0082157.1 MGP_AJ_G0031773.1 mouse_genomes_project 7 17462112 17466614 - Bcl3 protein_coding processed_transcript MGP_AJ_T0082158.1 MGP_AJ_G0031773.1 mouse_genomes_project 7 17462203 17472774 - MGP_AJ_P0082158 Bcl3 protein_coding protein_coding MGP_AJ_T0082159.1 MGP_AJ_G0031773.1 mouse_genomes_project 7 17463012 17473387 - Bcl3 protein_coding processed_transcript MGP_AJ_T0087872.1 MGP_AJ_G0033247.1 mouse_genomes_project 7 143811155 143826080 + MGP_AJ_P0087872 protein_coding protein_coding MGP_AJ_T0087873.1 MGP_AJ_G0033247.1 mouse_genomes_project 7 143823357 143825279 + protein_coding processed_transcript MGP_AJ_T0086452.1 MGP_AJ_G0032948.1 mouse_genomes_project 7 124801866 125225125 + MGP_AJ_P0086452 Hs3st4 protein_coding protein_coding MGP_AJ_T0086105.1 MGP_AJ_G0032871.1 mouse_genomes_project 7 116751825 116815646 + MGP_AJ_P0086105 protein_coding protein_coding MGP_AJ_T0086106.1 MGP_AJ_G0032871.1 mouse_genomes_project 7 116752140 116816971 + MGP_AJ_P0086106 protein_coding protein_coding MGP_AJ_T0086107.1 MGP_AJ_G0032871.1 mouse_genomes_project 7 116806955 116820068 + MGP_AJ_P0086107 protein_coding protein_coding MGP_AJ_T0086108.1 MGP_AJ_G0032871.1 mouse_genomes_project 7 116806990 116818494 + MGP_AJ_P0086108 protein_coding protein_coding MGP_AJ_T0086109.1 MGP_AJ_G0032871.1 mouse_genomes_project 7 116806995 116820065 + MGP_AJ_P0086109 protein_coding protein_coding MGP_AJ_T0086110.1 MGP_AJ_G0032871.1 mouse_genomes_project 7 116807020 116820068 + MGP_AJ_P0086110 protein_coding nonsense_mediated_decay MGP_AJ_T0087215.1 MGP_AJ_G0033086.1 mouse_genomes_project 7 132301868 132328932 - MGP_AJ_P0087215 Ikzf5 protein_coding protein_coding MGP_AJ_T0087216.1 MGP_AJ_G0033086.1 mouse_genomes_project 7 132303584 132328908 - MGP_AJ_P0087216 Ikzf5 protein_coding protein_coding MGP_AJ_T0087217.1 MGP_AJ_G0033086.1 mouse_genomes_project 7 132305911 132328789 - MGP_AJ_P0087217 Ikzf5 protein_coding protein_coding MGP_AJ_T0087218.1 MGP_AJ_G0033086.1 mouse_genomes_project 7 132306780 132328906 - MGP_AJ_P0087218 Ikzf5 protein_coding protein_coding MGP_AJ_T0087219.1 MGP_AJ_G0033086.1 mouse_genomes_project 7 132310215 132327492 - MGP_AJ_P0087219 Ikzf5 protein_coding protein_coding MGP_AJ_T0010875.1 MGP_AJ_G0008997.1 mouse_genomes_project 7 61556411 61556480 - Mir344d-1 miRNA miRNA MGP_AJ_T0086750.1 MGP_AJ_G0032994.1 mouse_genomes_project 7 127804001 127807025 + MGP_AJ_P0086750 Cdipt protein_coding protein_coding MGP_AJ_T0086751.1 MGP_AJ_G0032994.1 mouse_genomes_project 7 127804059 127808126 + MGP_AJ_P0086751 Cdipt protein_coding nonsense_mediated_decay MGP_AJ_T0086752.1 MGP_AJ_G0032994.1 mouse_genomes_project 7 127804081 127808128 + MGP_AJ_P0086752 Cdipt protein_coding nonsense_mediated_decay MGP_AJ_T0086753.1 MGP_AJ_G0032994.1 mouse_genomes_project 7 127804211 127807278 + MGP_AJ_P0086753 Cdipt protein_coding protein_coding MGP_AJ_T0086754.1 MGP_AJ_G0032994.1 mouse_genomes_project 7 127804353 127807664 + MGP_AJ_P0086754 Cdipt protein_coding protein_coding MGP_AJ_T0086755.1 MGP_AJ_G0032994.1 mouse_genomes_project 7 127804387 127808132 + MGP_AJ_P0086755 Cdipt protein_coding protein_coding MGP_AJ_T0086756.1 MGP_AJ_G0032994.1 mouse_genomes_project 7 127805854 127807102 + Cdipt protein_coding retained_intron MGP_AJ_T0084982.1 MGP_AJ_G0032471.1 mouse_genomes_project 7 89839035 89840063 - MGP_AJ_P0084982 protein_coding protein_coding MGP_AJ_T0015927.1 MGP_AJ_G0014022.1 mouse_genomes_project 7 125896756 125897413 + processed_pseudogene processed_pseudogene MGP_AJ_T0085904.1 MGP_AJ_G0032829.1 mouse_genomes_project 7 110356275 110368228 - MGP_AJ_P0085904 BC051019 protein_coding protein_coding MGP_AJ_T0085905.1 MGP_AJ_G0032829.1 mouse_genomes_project 7 110356278 110368292 - MGP_AJ_P0085905 BC051019 protein_coding protein_coding MGP_AJ_T0085906.1 MGP_AJ_G0032829.1 mouse_genomes_project 7 110360021 110365057 - MGP_AJ_P0085906 BC051019 protein_coding protein_coding MGP_AJ_T0101413.1 MGP_AJ_G0039379.1 mouse_genomes_project 7 58086920 58087052 - Gm26288 snoRNA snoRNA MGP_AJ_T0087495.1 MGP_AJ_G0033166.1 mouse_genomes_project 7 141610604 141611540 + MGP_AJ_P0087495 Olfr61 protein_coding protein_coding MGP_AJ_T0086598.1 MGP_AJ_G0032973.1 mouse_genomes_project 7 127469790 127482762 + Sgf29 protein_coding processed_transcript MGP_AJ_T0086599.1 MGP_AJ_G0032973.1 mouse_genomes_project 7 127469790 127491713 + MGP_AJ_P0086599 Sgf29 protein_coding protein_coding MGP_AJ_T0086600.1 MGP_AJ_G0032973.1 mouse_genomes_project 7 127469793 127483703 + MGP_AJ_P0086600 Sgf29 protein_coding protein_coding MGP_AJ_T0086601.1 MGP_AJ_G0032973.1 mouse_genomes_project 7 127469803 127482857 + Sgf29 protein_coding retained_intron MGP_AJ_T0086602.1 MGP_AJ_G0032973.1 mouse_genomes_project 7 127469828 127490670 + Sgf29 protein_coding retained_intron MGP_AJ_T0086603.1 MGP_AJ_G0032973.1 mouse_genomes_project 7 127469883 127491027 + MGP_AJ_P0086603 Sgf29 protein_coding nonsense_mediated_decay MGP_AJ_T0086604.1 MGP_AJ_G0032973.1 mouse_genomes_project 7 127479841 127491106 + MGP_AJ_P0086604 Sgf29 protein_coding nonsense_mediated_decay MGP_AJ_T0086605.1 MGP_AJ_G0032973.1 mouse_genomes_project 7 127482550 127489477 + Sgf29 protein_coding retained_intron MGP_AJ_T0086606.1 MGP_AJ_G0032973.1 mouse_genomes_project 7 127490365 127491180 + MGP_AJ_P0086606 Sgf29 protein_coding protein_coding MGP_AJ_T0086607.1 MGP_AJ_G0032973.1 mouse_genomes_project 7 127490818 127491567 + Sgf29 protein_coding processed_transcript MGP_AJ_T0101421.1 MGP_AJ_G0039387.1 mouse_genomes_project 7 59633108 59633197 - Gm22373 snoRNA snoRNA MGP_AJ_T0087723.1 MGP_AJ_G0033216.1 mouse_genomes_project 7 142465424 142469794 + MGP_AJ_P0087723 Cd151 protein_coding protein_coding MGP_AJ_T0087724.1 MGP_AJ_G0033216.1 mouse_genomes_project 7 142465424 142469794 + MGP_AJ_P0087724 Cd151 protein_coding protein_coding MGP_AJ_T0087725.1 MGP_AJ_G0033216.1 mouse_genomes_project 7 142466851 142469794 + MGP_AJ_P0087725 Cd151 protein_coding protein_coding MGP_AJ_T0081899.1 MGP_AJ_G0031692.1 mouse_genomes_project 7 14356042 14368193 + MGP_AJ_P0081899 Dact3 protein_coding protein_coding MGP_AJ_T0086213.1 MGP_AJ_G0032889.1 mouse_genomes_project 7 119600345 119645086 + Iqck protein_coding retained_intron MGP_AJ_T0086214.1 MGP_AJ_G0032889.1 mouse_genomes_project 7 119600360 119718973 + MGP_AJ_P0086214 Iqck protein_coding protein_coding MGP_AJ_T0086215.1 MGP_AJ_G0032889.1 mouse_genomes_project 7 119600360 119719505 + MGP_AJ_P0086215 Iqck protein_coding protein_coding MGP_AJ_T0086216.1 MGP_AJ_G0032889.1 mouse_genomes_project 7 119600360 119719141 + MGP_AJ_P0086216 Iqck protein_coding nonsense_mediated_decay MGP_AJ_T0086217.1 MGP_AJ_G0032889.1 mouse_genomes_project 7 119684264 119718619 + Iqck protein_coding processed_transcript MGP_AJ_T0082280.1 MGP_AJ_G0031822.1 mouse_genomes_project 7 22607603 22615227 + MGP_AJ_P0082280 Ceacam10 protein_coding protein_coding MGP_AJ_T0082281.1 MGP_AJ_G0031822.1 mouse_genomes_project 7 22607607 22615223 + MGP_AJ_P0082281 Ceacam10 protein_coding protein_coding MGP_AJ_T0082282.1 MGP_AJ_G0031822.1 mouse_genomes_project 7 22607660 22615228 + MGP_AJ_P0082282 Ceacam10 protein_coding nonsense_mediated_decay MGP_AJ_T0082283.1 MGP_AJ_G0031822.1 mouse_genomes_project 7 22614395 22615227 + Ceacam10 protein_coding retained_intron MGP_AJ_T0088011.1 MGP_AJ_G0033279.1 mouse_genomes_project 7 146290219 146321720 - MGP_AJ_P0088011 Tpcn2 protein_coding protein_coding MGP_AJ_T0084122.1 MGP_AJ_G0032275.1 mouse_genomes_project 7 48779070 48794234 - MGP_AJ_P0084122 E2f8 protein_coding protein_coding MGP_AJ_T0084123.1 MGP_AJ_G0032275.1 mouse_genomes_project 7 48779070 48793679 - MGP_AJ_P0084123 E2f8 protein_coding protein_coding MGP_AJ_T0084124.1 MGP_AJ_G0032275.1 mouse_genomes_project 7 48784748 48787893 - E2f8 protein_coding retained_intron MGP_AJ_T0084125.1 MGP_AJ_G0032275.1 mouse_genomes_project 7 48791470 48793642 - E2f8 protein_coding retained_intron MGP_AJ_T0082932.1 MGP_AJ_G0031983.1 mouse_genomes_project 7 28435456 28443638 - MGP_AJ_P0082932 Tbcb protein_coding protein_coding MGP_AJ_T0082933.1 MGP_AJ_G0031983.1 mouse_genomes_project 7 28435458 28438607 - Tbcb protein_coding processed_transcript MGP_AJ_T0082934.1 MGP_AJ_G0031983.1 mouse_genomes_project 7 28435462 28438668 - Tbcb protein_coding retained_intron MGP_AJ_T0085576.1 MGP_AJ_G0032654.1 mouse_genomes_project 7 104210539 104211502 - MGP_AJ_P0085576 Olfr67 protein_coding protein_coding MGP_AJ_T0008893.1 MGP_AJ_G0007179.1 mouse_genomes_project 7 65420636 65473427 - lincRNA lincRNA MGP_AJ_T0083019.1 MGP_AJ_G0032003.1 mouse_genomes_project 7 28757122 28760370 + Hspb6 protein_coding processed_transcript MGP_AJ_T0083020.1 MGP_AJ_G0032003.1 mouse_genomes_project 7 28757464 28760369 + Hspb6 protein_coding processed_transcript MGP_AJ_T0083021.1 MGP_AJ_G0032003.1 mouse_genomes_project 7 28758208 28760373 + MGP_AJ_P0083021 Hspb6 protein_coding protein_coding MGP_AJ_T0083022.1 MGP_AJ_G0032003.1 mouse_genomes_project 7 28758814 28759574 + Hspb6 protein_coding processed_transcript MGP_AJ_T0018427.1 MGP_AJ_G0015674.1 mouse_genomes_project 7 131713823 131718853 - Gm5602 processed_transcript processed_transcript MGP_AJ_T0098725.1 MGP_AJ_G0036709.1 mouse_genomes_project 7 70635839 70635924 + Gm24880 rRNA rRNA MGP_AJ_T0015933.1 MGP_AJ_G0014028.1 mouse_genomes_project 7 127567871 127568100 + processed_pseudogene processed_pseudogene MGP_AJ_T0086689.1 MGP_AJ_G0032985.1 mouse_genomes_project 7 127656452 127657481 - MGP_AJ_P0086689 4930451I11Rik protein_coding protein_coding MGP_AJ_T0086690.1 MGP_AJ_G0032985.1 mouse_genomes_project 7 127656453 127657624 - 4930451I11Rik protein_coding processed_transcript MGP_AJ_T0086691.1 MGP_AJ_G0032985.1 mouse_genomes_project 7 127656461 127657457 - MGP_AJ_P0086691 4930451I11Rik protein_coding protein_coding MGP_AJ_T0099095.1 MGP_AJ_G0037067.1 mouse_genomes_project 7 125010835 125114467 + Gm15338 sense_intronic sense_intronic MGP_AJ_T0084164.1 MGP_AJ_G0032283.1 mouse_genomes_project 7 51430816 51525132 + MGP_AJ_P0084164 Ano5 protein_coding unknown_likely_coding MGP_AJ_T0084165.1 MGP_AJ_G0032283.1 mouse_genomes_project 7 51431561 51529995 + MGP_AJ_P0084165 Ano5 protein_coding protein_coding MGP_AJ_T0087966.1 MGP_AJ_G0033268.1 mouse_genomes_project 7 144862884 144868802 + Gm498 protein_coding processed_transcript MGP_AJ_T0087967.1 MGP_AJ_G0033268.1 mouse_genomes_project 7 144865182 144892972 + MGP_AJ_P0087967 Gm498 protein_coding protein_coding MGP_AJ_T0087968.1 MGP_AJ_G0033268.1 mouse_genomes_project 7 144865188 144893972 + MGP_AJ_P0087968 Gm498 protein_coding protein_coding MGP_AJ_T0102750.1 MGP_AJ_G0040491.1 mouse_genomes_project 7 7752613 7752933 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0087400.1 MGP_AJ_G0033131.1 mouse_genomes_project 7 140184033 140202817 + MGP_AJ_P0087400 Pwwp2b protein_coding protein_coding MGP_AJ_T0087401.1 MGP_AJ_G0033131.1 mouse_genomes_project 7 140184033 140202817 + MGP_AJ_P0087401 Pwwp2b protein_coding protein_coding MGP_AJ_T0015881.1 MGP_AJ_G0013976.1 mouse_genomes_project 7 90293500 90293989 - processed_pseudogene processed_pseudogene MGP_AJ_T0087753.1 MGP_AJ_G0033223.1 mouse_genomes_project 7 142850719 142878315 - MGP_AJ_P0087753 Tollip protein_coding protein_coding MGP_AJ_T0087754.1 MGP_AJ_G0033223.1 mouse_genomes_project 7 142857476 142878208 - MGP_AJ_P0087754 Tollip protein_coding protein_coding MGP_AJ_T0087755.1 MGP_AJ_G0033223.1 mouse_genomes_project 7 142867888 142878323 - MGP_AJ_P0087755 Tollip protein_coding protein_coding MGP_AJ_T0083162.1 MGP_AJ_G0032031.1 mouse_genomes_project 7 29201739 29217394 - MGP_AJ_P0083162 Lsr protein_coding protein_coding MGP_AJ_T0083163.1 MGP_AJ_G0032031.1 mouse_genomes_project 7 29201744 29217432 - MGP_AJ_P0083163 Lsr protein_coding protein_coding MGP_AJ_T0083164.1 MGP_AJ_G0032031.1 mouse_genomes_project 7 29201746 29217395 - MGP_AJ_P0083164 Lsr protein_coding protein_coding MGP_AJ_T0083165.1 MGP_AJ_G0032031.1 mouse_genomes_project 7 29201748 29217290 - MGP_AJ_P0083165 Lsr protein_coding protein_coding MGP_AJ_T0083166.1 MGP_AJ_G0032031.1 mouse_genomes_project 7 29202231 29217383 - MGP_AJ_P0083166 Lsr protein_coding protein_coding MGP_AJ_T0082340.1 MGP_AJ_G0031833.1 mouse_genomes_project 7 22926833 22973345 - MGP_AJ_P0082340 Pou2f2 protein_coding protein_coding MGP_AJ_T0082341.1 MGP_AJ_G0031833.1 mouse_genomes_project 7 22926834 22973311 - MGP_AJ_P0082341 Pou2f2 protein_coding protein_coding MGP_AJ_T0082342.1 MGP_AJ_G0031833.1 mouse_genomes_project 7 22931918 22973311 - MGP_AJ_P0082342 Pou2f2 protein_coding protein_coding MGP_AJ_T0082343.1 MGP_AJ_G0031833.1 mouse_genomes_project 7 22931962 22973300 - MGP_AJ_P0082343 Pou2f2 protein_coding protein_coding MGP_AJ_T0082344.1 MGP_AJ_G0031833.1 mouse_genomes_project 7 22931962 22973311 - MGP_AJ_P0082344 Pou2f2 protein_coding protein_coding MGP_AJ_T0082345.1 MGP_AJ_G0031833.1 mouse_genomes_project 7 22932690 22973335 - MGP_AJ_P0082345 Pou2f2 protein_coding protein_coding MGP_AJ_T0082346.1 MGP_AJ_G0031833.1 mouse_genomes_project 7 22939244 22961321 - MGP_AJ_P0082346 Pou2f2 protein_coding protein_coding MGP_AJ_T0082347.1 MGP_AJ_G0031833.1 mouse_genomes_project 7 22961080 23002668 - Pou2f2 protein_coding retained_intron MGP_AJ_T0010836.1 MGP_AJ_G0008958.1 mouse_genomes_project 7 15126381 15126491 + Gm25068 miRNA miRNA MGP_AJ_T0086177.1 MGP_AJ_G0032883.1 mouse_genomes_project 7 119277145 119326873 - MGP_AJ_P0086177 Tmc7 protein_coding protein_coding MGP_AJ_T0086178.1 MGP_AJ_G0032883.1 mouse_genomes_project 7 119288006 119326823 - Tmc7 protein_coding retained_intron MGP_AJ_T0086179.1 MGP_AJ_G0032883.1 mouse_genomes_project 7 119306345 119308733 - Tmc7 protein_coding retained_intron MGP_AJ_T0086180.1 MGP_AJ_G0032883.1 mouse_genomes_project 7 119313479 119326846 - Tmc7 protein_coding processed_transcript MGP_AJ_T0083077.1 MGP_AJ_G0032009.1 mouse_genomes_project 7 28795154 28798446 - MGP_AJ_P0083077 Zbtb32 protein_coding protein_coding MGP_AJ_T0083078.1 MGP_AJ_G0032009.1 mouse_genomes_project 7 28795156 28804399 - MGP_AJ_P0083078 Zbtb32 protein_coding protein_coding MGP_AJ_T0083079.1 MGP_AJ_G0032009.1 mouse_genomes_project 7 28803461 28804439 - Zbtb32 protein_coding processed_transcript MGP_AJ_T0085978.1 MGP_AJ_G0032846.1 mouse_genomes_project 7 111699795 111727311 + MGP_AJ_P0085978 Ctr9 protein_coding protein_coding MGP_AJ_T0085979.1 MGP_AJ_G0032846.1 mouse_genomes_project 7 111699839 111718591 + Ctr9 protein_coding retained_intron MGP_AJ_T0085980.1 MGP_AJ_G0032846.1 mouse_genomes_project 7 111699857 111701654 + Ctr9 protein_coding retained_intron MGP_AJ_T0085981.1 MGP_AJ_G0032846.1 mouse_genomes_project 7 111701059 111704901 + Ctr9 protein_coding processed_transcript MGP_AJ_T0085982.1 MGP_AJ_G0032846.1 mouse_genomes_project 7 111704880 111706237 + Ctr9 protein_coding retained_intron MGP_AJ_T0085983.1 MGP_AJ_G0032846.1 mouse_genomes_project 7 111717249 111717762 + Ctr9 protein_coding retained_intron MGP_AJ_T0085984.1 MGP_AJ_G0032846.1 mouse_genomes_project 7 111717249 111718923 + Ctr9 protein_coding retained_intron MGP_AJ_T0085985.1 MGP_AJ_G0032846.1 mouse_genomes_project 7 111721936 111723304 + Ctr9 protein_coding processed_transcript MGP_AJ_T0081858.1 MGP_AJ_G0031686.1 mouse_genomes_project 7 14198104 14202308 + MGP_AJ_P0081858 Ceacam9 protein_coding protein_coding MGP_AJ_T0081859.1 MGP_AJ_G0031686.1 mouse_genomes_project 7 14198133 14201390 + MGP_AJ_P0081859 Ceacam9 protein_coding protein_coding MGP_AJ_T0005217.1 MGP_AJ_G0004436.1 mouse_genomes_project 7 56187889 56188854 - Gm44506 antisense antisense MGP_AJ_T0087478.1 MGP_AJ_G0033151.1 mouse_genomes_project 7 141125732 141126788 + MGP_AJ_P0087478 Olfr523 protein_coding protein_coding MGP_AJ_T0008938.1 MGP_AJ_G0007215.1 mouse_genomes_project 7 75695562 75698571 - AU020206 lincRNA lincRNA MGP_AJ_T0008939.1 MGP_AJ_G0007215.1 mouse_genomes_project 7 75696286 75710355 - AU020206 lincRNA lincRNA MGP_AJ_T0083762.1 MGP_AJ_G0032164.1 mouse_genomes_project 7 44260359 44264921 + MGP_AJ_P0083762 Fuz protein_coding protein_coding MGP_AJ_T0085855.1 MGP_AJ_G0032807.1 mouse_genomes_project 7 109245552 109246560 + MGP_AJ_P0085855 Olfr506 protein_coding protein_coding MGP_AJ_T0085573.1 MGP_AJ_G0032651.1 mouse_genomes_project 7 104153427 104154372 - MGP_AJ_P0085573 Olfr629 protein_coding protein_coding MGP_AJ_T0005187.1 MGP_AJ_G0004416.1 mouse_genomes_project 7 29201378 29205589 + Gm4673 antisense antisense MGP_AJ_T0082384.1 MGP_AJ_G0031842.1 mouse_genomes_project 7 23163022 23213082 + MGP_AJ_P0082384 Megf8 protein_coding protein_coding MGP_AJ_T0082385.1 MGP_AJ_G0031842.1 mouse_genomes_project 7 23193147 23213079 + Megf8 protein_coding retained_intron MGP_AJ_T0085113.1 MGP_AJ_G0032502.1 mouse_genomes_project 7 97796435 97799527 + Rsf1 protein_coding retained_intron MGP_AJ_T0085114.1 MGP_AJ_G0032502.1 mouse_genomes_project 7 97796443 97904933 + Rsf1 protein_coding retained_intron MGP_AJ_T0085115.1 MGP_AJ_G0032502.1 mouse_genomes_project 7 97796443 97911297 + MGP_AJ_P0085115 Rsf1 protein_coding protein_coding MGP_AJ_T0085116.1 MGP_AJ_G0032502.1 mouse_genomes_project 7 97796453 97857311 + MGP_AJ_P0085116 Rsf1 protein_coding nonsense_mediated_decay MGP_AJ_T0085117.1 MGP_AJ_G0032502.1 mouse_genomes_project 7 97875015 97878701 + Rsf1 protein_coding retained_intron MGP_AJ_T0085118.1 MGP_AJ_G0032502.1 mouse_genomes_project 7 97880338 97905121 + MGP_AJ_P0085118 Rsf1 protein_coding nonsense_mediated_decay MGP_AJ_T0085119.1 MGP_AJ_G0032502.1 mouse_genomes_project 7 97887280 97894716 + Rsf1 protein_coding retained_intron MGP_AJ_T0085120.1 MGP_AJ_G0032502.1 mouse_genomes_project 7 97887635 97899308 + MGP_AJ_P0085120 Rsf1 protein_coding nonsense_mediated_decay MGP_AJ_T0015886.1 MGP_AJ_G0013981.1 mouse_genomes_project 7 95688043 95688409 + processed_pseudogene processed_pseudogene MGP_AJ_T0084489.1 MGP_AJ_G0032349.1 mouse_genomes_project 7 73617736 73655253 + MGP_AJ_P0084489 Fam174b protein_coding protein_coding MGP_AJ_T0084490.1 MGP_AJ_G0032349.1 mouse_genomes_project 7 73644037 73653491 + MGP_AJ_P0084490 Fam174b protein_coding protein_coding MGP_AJ_T0084491.1 MGP_AJ_G0032349.1 mouse_genomes_project 7 73644101 73654352 + Fam174b protein_coding retained_intron MGP_AJ_T0002217.1 MGP_AJ_G0002129.1 mouse_genomes_project 7 38798364 38801667 - TEC TEC MGP_AJ_T0084622.1 MGP_AJ_G0032371.1 mouse_genomes_project 7 79714408 79731916 - MGP_AJ_P0084622 Kif7 protein_coding protein_coding MGP_AJ_T0084623.1 MGP_AJ_G0032371.1 mouse_genomes_project 7 79714409 79730481 - MGP_AJ_P0084623 Kif7 protein_coding protein_coding MGP_AJ_T0084624.1 MGP_AJ_G0032371.1 mouse_genomes_project 7 79714409 79730481 - MGP_AJ_P0084624 Kif7 protein_coding protein_coding MGP_AJ_T0084625.1 MGP_AJ_G0032371.1 mouse_genomes_project 7 79714829 79731865 - MGP_AJ_P0084625 Kif7 protein_coding protein_coding MGP_AJ_T0087489.1 MGP_AJ_G0033160.1 mouse_genomes_project 7 141368973 141369903 - MGP_AJ_P0087489 Olfr532 protein_coding protein_coding MGP_AJ_T0002322.1 MGP_AJ_G0002233.1 mouse_genomes_project 7 144327172 144328574 + TEC TEC MGP_AJ_T0081765.1 MGP_AJ_G0031652.1 mouse_genomes_project 7 11165598 11244643 - MGP_AJ_P0081765 protein_coding protein_coding MGP_AJ_T0015850.1 MGP_AJ_G0013945.1 mouse_genomes_project 7 69077812 69078815 + processed_pseudogene processed_pseudogene MGP_AJ_T0009028.1 MGP_AJ_G0007268.1 mouse_genomes_project 7 127626753 127635021 - lincRNA lincRNA MGP_AJ_T0086969.1 MGP_AJ_G0033039.1 mouse_genomes_project 7 128643273 128665337 - MGP_AJ_P0086969 Stx1b protein_coding protein_coding MGP_AJ_T0086970.1 MGP_AJ_G0033039.1 mouse_genomes_project 7 128646675 128650220 - MGP_AJ_P0086970 Stx1b protein_coding protein_coding MGP_AJ_T0084381.1 MGP_AJ_G0032329.1 mouse_genomes_project 7 66069912 66106856 - Lrrk1 protein_coding processed_transcript MGP_AJ_T0084382.1 MGP_AJ_G0032329.1 mouse_genomes_project 7 66103065 66226058 - MGP_AJ_P0084382 Lrrk1 protein_coding protein_coding MGP_AJ_T0084383.1 MGP_AJ_G0032329.1 mouse_genomes_project 7 66103072 66109875 - Lrrk1 protein_coding retained_intron MGP_AJ_T0084384.1 MGP_AJ_G0032329.1 mouse_genomes_project 7 66103503 66127768 - MGP_AJ_P0084384 Lrrk1 protein_coding nonsense_mediated_decay MGP_AJ_T0084385.1 MGP_AJ_G0032329.1 mouse_genomes_project 7 66110493 66114108 - Lrrk1 protein_coding retained_intron MGP_AJ_T0084386.1 MGP_AJ_G0032329.1 mouse_genomes_project 7 66180803 66182572 - Lrrk1 protein_coding processed_transcript MGP_AJ_T0084387.1 MGP_AJ_G0032329.1 mouse_genomes_project 7 66180972 66226015 - Lrrk1 protein_coding retained_intron MGP_AJ_T0081934.1 MGP_AJ_G0031704.1 mouse_genomes_project 7 15203611 15263095 + MGP_AJ_P0081934 Ceacam5 protein_coding protein_coding MGP_AJ_T0009013.1 MGP_AJ_G0007257.1 mouse_genomes_project 7 122026174 122064837 + Gm45079 lincRNA lincRNA MGP_AJ_T0085680.1 MGP_AJ_G0032728.1 mouse_genomes_project 7 105775319 105776445 + MGP_AJ_P0085680 Olfr692 protein_coding protein_coding MGP_AJ_T0085864.1 MGP_AJ_G0032816.1 mouse_genomes_project 7 109469695 109516607 - MGP_AJ_P0085864 Olfr519 protein_coding protein_coding MGP_AJ_T0085865.1 MGP_AJ_G0032816.1 mouse_genomes_project 7 109469695 109516622 - MGP_AJ_P0085865 Olfr519 protein_coding protein_coding MGP_AJ_T0085569.1 MGP_AJ_G0032647.1 mouse_genomes_project 7 104056551 104057505 - MGP_AJ_P0085569 Olfr622 protein_coding protein_coding MGP_AJ_T0085502.1 MGP_AJ_G0032585.1 mouse_genomes_project 7 102834116 102835246 - MGP_AJ_P0085502 Olfr543 protein_coding protein_coding MGP_AJ_T0015811.1 MGP_AJ_G0013906.1 mouse_genomes_project 7 41777084 41777595 + processed_pseudogene processed_pseudogene MGP_AJ_T0102826.1 MGP_AJ_G0040566.1 mouse_genomes_project 7 43177897 43178114 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0084564.1 MGP_AJ_G0032363.1 mouse_genomes_project 7 79118059 79133675 - MGP_AJ_P0084564 Hapln3 protein_coding protein_coding MGP_AJ_T0084565.1 MGP_AJ_G0032363.1 mouse_genomes_project 7 79118695 79133652 - MGP_AJ_P0084565 Hapln3 protein_coding protein_coding MGP_AJ_T0084566.1 MGP_AJ_G0032363.1 mouse_genomes_project 7 79119978 79133670 - MGP_AJ_P0084566 Hapln3 protein_coding nonsense_mediated_decay MGP_AJ_T0084567.1 MGP_AJ_G0032363.1 mouse_genomes_project 7 79124785 79131310 - Hapln3 protein_coding processed_transcript MGP_AJ_T0081529.1 MGP_AJ_G0031546.1 mouse_genomes_project 7 1925368 1931545 - MGP_AJ_P0081529 Sbk3 protein_coding protein_coding MGP_AJ_T0081530.1 MGP_AJ_G0031546.1 mouse_genomes_project 7 1927947 1931752 - MGP_AJ_P0081530 Sbk3 protein_coding protein_coding MGP_AJ_T0082794.1 MGP_AJ_G0031949.1 mouse_genomes_project 7 27299255 27316946 + MGP_AJ_P0082794 Rasgrp4 protein_coding protein_coding MGP_AJ_T0082795.1 MGP_AJ_G0031949.1 mouse_genomes_project 7 27299255 27316946 + MGP_AJ_P0082795 Rasgrp4 protein_coding protein_coding MGP_AJ_T0082796.1 MGP_AJ_G0031949.1 mouse_genomes_project 7 27299255 27316946 + MGP_AJ_P0082796 Rasgrp4 protein_coding protein_coding MGP_AJ_T0082797.1 MGP_AJ_G0031949.1 mouse_genomes_project 7 27299255 27316946 + MGP_AJ_P0082797 Rasgrp4 protein_coding protein_coding MGP_AJ_T0082798.1 MGP_AJ_G0031949.1 mouse_genomes_project 7 27299255 27316946 + MGP_AJ_P0082798 Rasgrp4 protein_coding protein_coding MGP_AJ_T0082799.1 MGP_AJ_G0031949.1 mouse_genomes_project 7 27299255 27316946 + MGP_AJ_P0082799 Rasgrp4 protein_coding protein_coding MGP_AJ_T0082800.1 MGP_AJ_G0031949.1 mouse_genomes_project 7 27299337 27313712 + Rasgrp4 protein_coding retained_intron MGP_AJ_T0082801.1 MGP_AJ_G0031949.1 mouse_genomes_project 7 27299337 27318340 + MGP_AJ_P0082801 Rasgrp4 protein_coding protein_coding MGP_AJ_T0082802.1 MGP_AJ_G0031949.1 mouse_genomes_project 7 27299337 27318361 + MGP_AJ_P0082802 Rasgrp4 protein_coding protein_coding MGP_AJ_T0082803.1 MGP_AJ_G0031949.1 mouse_genomes_project 7 27299337 27316027 + MGP_AJ_P0082803 Rasgrp4 protein_coding protein_coding MGP_AJ_T0082804.1 MGP_AJ_G0031949.1 mouse_genomes_project 7 27299386 27315384 + Rasgrp4 protein_coding retained_intron MGP_AJ_T0082805.1 MGP_AJ_G0031949.1 mouse_genomes_project 7 27299410 27312955 + MGP_AJ_P0082805 Rasgrp4 protein_coding protein_coding MGP_AJ_T0082806.1 MGP_AJ_G0031949.1 mouse_genomes_project 7 27299477 27315912 + MGP_AJ_P0082806 Rasgrp4 protein_coding nonsense_mediated_decay MGP_AJ_T0082807.1 MGP_AJ_G0031949.1 mouse_genomes_project 7 27314592 27316027 + MGP_AJ_P0082807 Rasgrp4 protein_coding protein_coding MGP_AJ_T0083838.1 MGP_AJ_G0032193.1 mouse_genomes_project 7 44720922 44724613 + MGP_AJ_P0083838 Hrc protein_coding protein_coding MGP_AJ_T0086387.1 MGP_AJ_G0032938.1 mouse_genomes_project 7 123021857 123026160 + MGP_AJ_P0086387 Chp2 protein_coding protein_coding MGP_AJ_T0086388.1 MGP_AJ_G0032938.1 mouse_genomes_project 7 123024909 123025520 + Chp2 protein_coding processed_transcript MGP_AJ_T0085251.1 MGP_AJ_G0032537.1 mouse_genomes_project 7 100439643 100441669 + MGP_AJ_P0085251 Lipt2 protein_coding protein_coding MGP_AJ_T0084709.1 MGP_AJ_G0032390.1 mouse_genomes_project 7 80369241 80384770 - MGP_AJ_P0084709 Unc45a protein_coding protein_coding MGP_AJ_T0084710.1 MGP_AJ_G0032390.1 mouse_genomes_project 7 80369244 80383984 - MGP_AJ_P0084710 Unc45a protein_coding protein_coding MGP_AJ_T0084711.1 MGP_AJ_G0032390.1 mouse_genomes_project 7 80369245 80383936 - MGP_AJ_P0084711 Unc45a protein_coding nonsense_mediated_decay MGP_AJ_T0084712.1 MGP_AJ_G0032390.1 mouse_genomes_project 7 80369275 80383527 - MGP_AJ_P0084712 Unc45a protein_coding protein_coding MGP_AJ_T0084713.1 MGP_AJ_G0032390.1 mouse_genomes_project 7 80378155 80383971 - MGP_AJ_P0084713 Unc45a protein_coding protein_coding MGP_AJ_T0084714.1 MGP_AJ_G0032390.1 mouse_genomes_project 7 80382235 80383966 - Unc45a protein_coding retained_intron MGP_AJ_T0084715.1 MGP_AJ_G0032390.1 mouse_genomes_project 7 80382785 80383913 - Unc45a protein_coding retained_intron MGP_AJ_T0084716.1 MGP_AJ_G0032390.1 mouse_genomes_project 7 80383073 80383982 - MGP_AJ_P0084716 Unc45a protein_coding protein_coding MGP_AJ_T0084717.1 MGP_AJ_G0032390.1 mouse_genomes_project 7 80383077 80383984 - Unc45a protein_coding processed_transcript MGP_AJ_T0084718.1 MGP_AJ_G0032390.1 mouse_genomes_project 7 80383468 80383976 - Unc45a protein_coding retained_intron MGP_AJ_T0084953.1 MGP_AJ_G0032462.1 mouse_genomes_project 7 87100683 87147924 + MGP_AJ_P0084953 protein_coding protein_coding MGP_AJ_T0102873.1 MGP_AJ_G0040613.1 mouse_genomes_project 7 85649277 85650152 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0008856.1 MGP_AJ_G0007154.1 mouse_genomes_project 7 36554374 36571221 + Gm44635 lincRNA lincRNA MGP_AJ_T0002243.1 MGP_AJ_G0002155.1 mouse_genomes_project 7 64153849 64154450 + TEC TEC MGP_AJ_T0087441.1 MGP_AJ_G0033140.1 mouse_genomes_project 7 140960093 140986169 - MGP_AJ_P0087441 Tubgcp2 protein_coding unknown_likely_coding MGP_AJ_T0085555.1 MGP_AJ_G0032633.1 mouse_genomes_project 7 103852008 103852953 - MGP_AJ_P0085555 protein_coding protein_coding MGP_AJ_T0085374.1 MGP_AJ_G0032559.1 mouse_genomes_project 7 101723665 101816456 + MGP_AJ_P0085374 protein_coding protein_coding MGP_AJ_T0085375.1 MGP_AJ_G0032559.1 mouse_genomes_project 7 101723665 101816456 + MGP_AJ_P0085375 protein_coding protein_coding MGP_AJ_T0085376.1 MGP_AJ_G0032559.1 mouse_genomes_project 7 101723683 101816441 + MGP_AJ_P0085376 protein_coding protein_coding MGP_AJ_T0011681.1 MGP_AJ_G0009803.1 mouse_genomes_project 7 23754546 23754653 + Gm23921 misc_RNA misc_RNA MGP_AJ_T0085023.1 MGP_AJ_G0032483.1 mouse_genomes_project 7 90654185 90661968 - MGP_AJ_P0085023 Tmem126b protein_coding protein_coding MGP_AJ_T0085024.1 MGP_AJ_G0032483.1 mouse_genomes_project 7 90655916 90661962 - Tmem126b protein_coding retained_intron MGP_AJ_T0005171.1 MGP_AJ_G0004402.1 mouse_genomes_project 7 25126456 25132644 - Gm15883 antisense antisense MGP_AJ_T0100191.1 MGP_AJ_G0038157.1 mouse_genomes_project 7 139051556 139051663 - Gm25798 snRNA snRNA MGP_AJ_T0002223.1 MGP_AJ_G0002135.1 mouse_genomes_project 7 43666578 43666735 + TEC TEC MGP_AJ_T0086070.1 MGP_AJ_G0032867.1 mouse_genomes_project 7 115337685 115342539 - MGP_AJ_P0086070 Calca protein_coding protein_coding MGP_AJ_T0086071.1 MGP_AJ_G0032867.1 mouse_genomes_project 7 115337775 115338853 - Calca protein_coding retained_intron MGP_AJ_T0086072.1 MGP_AJ_G0032867.1 mouse_genomes_project 7 115338759 115342489 - MGP_AJ_P0086072 Calca protein_coding protein_coding MGP_AJ_T0086073.1 MGP_AJ_G0032867.1 mouse_genomes_project 7 115339474 115342494 - MGP_AJ_P0086073 Calca protein_coding protein_coding MGP_AJ_T0086074.1 MGP_AJ_G0032867.1 mouse_genomes_project 7 115339591 115342477 - MGP_AJ_P0086074 Calca protein_coding protein_coding MGP_AJ_T0086075.1 MGP_AJ_G0032867.1 mouse_genomes_project 7 115340522 115342488 - MGP_AJ_P0086075 Calca protein_coding protein_coding MGP_AJ_T0086076.1 MGP_AJ_G0032867.1 mouse_genomes_project 7 115340553 115342453 - MGP_AJ_P0086076 Calca protein_coding protein_coding MGP_AJ_T0087348.1 MGP_AJ_G0033119.1 mouse_genomes_project 7 137842361 138077419 + MGP_AJ_P0087348 Mgmt protein_coding protein_coding MGP_AJ_T0102776.1 MGP_AJ_G0040517.1 mouse_genomes_project 7 11599690 11600261 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0100183.1 MGP_AJ_G0038149.1 mouse_genomes_project 7 124757391 124757497 - Gm23788 snRNA snRNA MGP_AJ_T0083649.1 MGP_AJ_G0032143.1 mouse_genomes_project 7 43846263 43852856 - MGP_AJ_P0083649 Emc10 protein_coding protein_coding MGP_AJ_T0083650.1 MGP_AJ_G0032143.1 mouse_genomes_project 7 43846437 43852733 - MGP_AJ_P0083650 Emc10 protein_coding protein_coding MGP_AJ_T0083651.1 MGP_AJ_G0032143.1 mouse_genomes_project 7 43847211 43848345 - Emc10 protein_coding retained_intron MGP_AJ_T0083652.1 MGP_AJ_G0032143.1 mouse_genomes_project 7 43848061 43852790 - Emc10 protein_coding retained_intron MGP_AJ_T0083653.1 MGP_AJ_G0032143.1 mouse_genomes_project 7 43848329 43852755 - MGP_AJ_P0083653 Emc10 protein_coding protein_coding MGP_AJ_T0083654.1 MGP_AJ_G0032143.1 mouse_genomes_project 7 43850600 43852724 - Emc10 protein_coding retained_intron MGP_AJ_T0085642.1 MGP_AJ_G0032692.1 mouse_genomes_project 7 104809570 104834699 - MGP_AJ_P0085642 Trim30d protein_coding protein_coding MGP_AJ_T0085643.1 MGP_AJ_G0032692.1 mouse_genomes_project 7 104809750 104818161 - MGP_AJ_P0085643 Trim30d protein_coding protein_coding MGP_AJ_T0015789.1 MGP_AJ_G0013884.1 mouse_genomes_project 7 33962087 33964350 - processed_pseudogene processed_pseudogene MGP_AJ_T0086551.1 MGP_AJ_G0032965.1 mouse_genomes_project 7 127308086 127311665 + MGP_AJ_P0086551 Tufm protein_coding protein_coding MGP_AJ_T0086553.1 MGP_AJ_G0032965.1 mouse_genomes_project 7 127308103 127311671 + MGP_AJ_P0086553 Tufm protein_coding protein_coding MGP_AJ_T0086554.1 MGP_AJ_G0032965.1 mouse_genomes_project 7 127308354 127309672 + Tufm protein_coding processed_transcript MGP_AJ_T0086555.1 MGP_AJ_G0032965.1 mouse_genomes_project 7 127309339 127309848 + Tufm protein_coding retained_intron MGP_AJ_T0086556.1 MGP_AJ_G0032965.1 mouse_genomes_project 7 127309411 127310101 + MGP_AJ_P0086556 Tufm protein_coding protein_coding MGP_AJ_T0086557.1 MGP_AJ_G0032965.1 mouse_genomes_project 7 127310096 127311168 + MGP_AJ_P0086557 Tufm protein_coding protein_coding MGP_AJ_T0099091.1 MGP_AJ_G0037064.1 mouse_genomes_project 7 116999830 117001119 - Gm44867 sense_intronic sense_intronic MGP_AJ_T0099092.1 MGP_AJ_G0037064.1 mouse_genomes_project 7 116999830 117001261 - Gm44867 sense_intronic sense_intronic MGP_AJ_T0083734.1 MGP_AJ_G0032160.1 mouse_genomes_project 7 44212535 44218951 + MGP_AJ_P0083734 Akt1s1 protein_coding protein_coding MGP_AJ_T0083735.1 MGP_AJ_G0032160.1 mouse_genomes_project 7 44212768 44218964 + MGP_AJ_P0083735 Akt1s1 protein_coding protein_coding MGP_AJ_T0083736.1 MGP_AJ_G0032160.1 mouse_genomes_project 7 44212888 44218960 + Akt1s1 protein_coding retained_intron MGP_AJ_T0083737.1 MGP_AJ_G0032160.1 mouse_genomes_project 7 44213125 44216489 + MGP_AJ_P0083737 Akt1s1 protein_coding protein_coding MGP_AJ_T0083738.1 MGP_AJ_G0032160.1 mouse_genomes_project 7 44213173 44218279 + MGP_AJ_P0083738 Akt1s1 protein_coding protein_coding MGP_AJ_T0083739.1 MGP_AJ_G0032160.1 mouse_genomes_project 7 44213551 44217579 + MGP_AJ_P0083739 Akt1s1 protein_coding protein_coding MGP_AJ_T0083740.1 MGP_AJ_G0032160.1 mouse_genomes_project 7 44213560 44218961 + MGP_AJ_P0083740 Akt1s1 protein_coding protein_coding MGP_AJ_T0083741.1 MGP_AJ_G0032160.1 mouse_genomes_project 7 44213940 44216406 + MGP_AJ_P0083741 Akt1s1 protein_coding protein_coding MGP_AJ_T0083742.1 MGP_AJ_G0032160.1 mouse_genomes_project 7 44215036 44216181 + MGP_AJ_P0083742 Akt1s1 protein_coding protein_coding MGP_AJ_T0083743.1 MGP_AJ_G0032160.1 mouse_genomes_project 7 44216113 44218229 + MGP_AJ_P0083743 Akt1s1 protein_coding protein_coding MGP_AJ_T0083744.1 MGP_AJ_G0032160.1 mouse_genomes_project 7 44216462 44218187 + Akt1s1 protein_coding retained_intron MGP_AJ_T0085868.1 MGP_AJ_G0032819.1 mouse_genomes_project 7 109544325 109569701 - MGP_AJ_P0085868 Nlrp10 protein_coding protein_coding MGP_AJ_T0081611.1 MGP_AJ_G0031587.1 mouse_genomes_project 7 3663048 3687963 - MGP_AJ_P0081611 Zim1 protein_coding protein_coding MGP_AJ_T0081612.1 MGP_AJ_G0031587.1 mouse_genomes_project 7 3667579 3687942 - MGP_AJ_P0081612 Zim1 protein_coding protein_coding MGP_AJ_T0081613.1 MGP_AJ_G0031587.1 mouse_genomes_project 7 3668495 3680243 - MGP_AJ_P0081613 Zim1 protein_coding protein_coding MGP_AJ_T0087231.1 MGP_AJ_G0033091.1 mouse_genomes_project 7 132884791 132913452 + MGP_AJ_P0087231 Gpr26 protein_coding protein_coding MGP_AJ_T0008914.1 MGP_AJ_G0007195.1 mouse_genomes_project 7 71849165 71904805 + 1700011C11Rik lincRNA lincRNA MGP_AJ_T0015732.1 MGP_AJ_G0013827.1 mouse_genomes_project 7 15294181 15294673 + processed_pseudogene processed_pseudogene MGP_AJ_T0087897.1 MGP_AJ_G0033253.1 mouse_genomes_project 7 144051363 144053208 + MGP_AJ_P0087897 Tssc4 protein_coding protein_coding MGP_AJ_T0087898.1 MGP_AJ_G0033253.1 mouse_genomes_project 7 144051455 144052661 + MGP_AJ_P0087898 Tssc4 protein_coding protein_coding MGP_AJ_T0087899.1 MGP_AJ_G0033253.1 mouse_genomes_project 7 144051482 144053202 + MGP_AJ_P0087899 Tssc4 protein_coding protein_coding MGP_AJ_T0087900.1 MGP_AJ_G0033253.1 mouse_genomes_project 7 144051482 144053202 + MGP_AJ_P0087900 Tssc4 protein_coding protein_coding MGP_AJ_T0087901.1 MGP_AJ_G0033253.1 mouse_genomes_project 7 144051538 144052660 + MGP_AJ_P0087901 Tssc4 protein_coding protein_coding MGP_AJ_T0087902.1 MGP_AJ_G0033253.1 mouse_genomes_project 7 144051658 144052724 + MGP_AJ_P0087902 Tssc4 protein_coding protein_coding MGP_AJ_T0081438.1 MGP_AJ_G0031522.1 mouse_genomes_project 7 1437775 1452467 - MGP_AJ_P0081438 Dnaaf3 protein_coding unknown_likely_coding MGP_AJ_T0081446.1 MGP_AJ_G0031522.1 mouse_genomes_project 7 1442279 1452319 - MGP_AJ_P0081446 Dnaaf3 protein_coding protein_coding MGP_AJ_T0085020.1 MGP_AJ_G0032482.1 mouse_genomes_project 7 90636712 90643194 - MGP_AJ_P0085020 Tmem126a protein_coding nonsense_mediated_decay MGP_AJ_T0085021.1 MGP_AJ_G0032482.1 mouse_genomes_project 7 90636717 90643215 - MGP_AJ_P0085021 Tmem126a protein_coding protein_coding MGP_AJ_T0085022.1 MGP_AJ_G0032482.1 mouse_genomes_project 7 90641190 90643194 - Tmem126a protein_coding retained_intron MGP_AJ_T0008862.1 MGP_AJ_G0007157.1 mouse_genomes_project 7 38609308 38617702 - lincRNA lincRNA MGP_AJ_T0008863.1 MGP_AJ_G0007157.1 mouse_genomes_project 7 38609312 38617719 - lincRNA lincRNA MGP_AJ_T0008864.1 MGP_AJ_G0007157.1 mouse_genomes_project 7 38609313 38617740 - lincRNA lincRNA MGP_AJ_T0008865.1 MGP_AJ_G0007157.1 mouse_genomes_project 7 38609366 38617703 - lincRNA lincRNA MGP_AJ_T0010820.1 MGP_AJ_G0008942.1 mouse_genomes_project 7 124904 124987 + Mir290a miRNA miRNA MGP_AJ_T0005214.1 MGP_AJ_G0004435.1 mouse_genomes_project 7 50414630 50465496 - Nell1os antisense antisense MGP_AJ_T0005215.1 MGP_AJ_G0004435.1 mouse_genomes_project 7 50438115 50465583 - Nell1os antisense antisense MGP_AJ_T0005216.1 MGP_AJ_G0004435.1 mouse_genomes_project 7 50451805 50463465 - Nell1os antisense antisense MGP_AJ_T0010850.1 MGP_AJ_G0008972.1 mouse_genomes_project 7 27209994 27210060 + Gm44408 miRNA miRNA MGP_AJ_T0081821.1 MGP_AJ_G0031674.1 mouse_genomes_project 7 13659467 13666306 - Dhx34 protein_coding retained_intron MGP_AJ_T0081822.1 MGP_AJ_G0031674.1 mouse_genomes_project 7 13659467 13684179 - MGP_AJ_P0081822 Dhx34 protein_coding protein_coding MGP_AJ_T0081823.1 MGP_AJ_G0031674.1 mouse_genomes_project 7 13659541 13684174 - MGP_AJ_P0081823 Dhx34 protein_coding protein_coding MGP_AJ_T0081824.1 MGP_AJ_G0031674.1 mouse_genomes_project 7 13659541 13684135 - MGP_AJ_P0081824 Dhx34 protein_coding protein_coding MGP_AJ_T0081825.1 MGP_AJ_G0031674.1 mouse_genomes_project 7 13659541 13684135 - MGP_AJ_P0081825 Dhx34 protein_coding protein_coding MGP_AJ_T0081826.1 MGP_AJ_G0031674.1 mouse_genomes_project 7 13659544 13684135 - MGP_AJ_P0081826 Dhx34 protein_coding protein_coding MGP_AJ_T0081827.1 MGP_AJ_G0031674.1 mouse_genomes_project 7 13668092 13675534 - Dhx34 protein_coding processed_transcript MGP_AJ_T0083878.1 MGP_AJ_G0032202.1 mouse_genomes_project 7 44844586 44846037 - protein_coding processed_transcript MGP_AJ_T0083879.1 MGP_AJ_G0032202.1 mouse_genomes_project 7 44844586 44846659 - protein_coding processed_transcript MGP_AJ_T0083880.1 MGP_AJ_G0032202.1 mouse_genomes_project 7 44844607 44846701 - protein_coding retained_intron MGP_AJ_T0005132.1 MGP_AJ_G0004378.1 mouse_genomes_project 7 300174 309616 - Gm44151 antisense antisense MGP_AJ_T0082089.1 MGP_AJ_G0031756.1 mouse_genomes_project 7 17151616 17154134 - MGP_AJ_P0082089 Bloc1s3 protein_coding protein_coding MGP_AJ_T0083488.1 MGP_AJ_G0032102.1 mouse_genomes_project 7 42423029 42440111 - MGP_AJ_P0083488 Zfp715 protein_coding protein_coding MGP_AJ_T0083489.1 MGP_AJ_G0032102.1 mouse_genomes_project 7 42423355 42440119 - MGP_AJ_P0083489 Zfp715 protein_coding protein_coding MGP_AJ_T0083490.1 MGP_AJ_G0032102.1 mouse_genomes_project 7 42423355 42438350 - MGP_AJ_P0083490 Zfp715 protein_coding protein_coding MGP_AJ_T0083491.1 MGP_AJ_G0032102.1 mouse_genomes_project 7 42423355 42440127 - MGP_AJ_P0083491 Zfp715 protein_coding nonsense_mediated_decay MGP_AJ_T0083492.1 MGP_AJ_G0032102.1 mouse_genomes_project 7 42426784 42439959 - MGP_AJ_P0083492 Zfp715 protein_coding protein_coding MGP_AJ_T0083493.1 MGP_AJ_G0032102.1 mouse_genomes_project 7 42428308 42440158 - Zfp715 protein_coding retained_intron MGP_AJ_T0083494.1 MGP_AJ_G0032102.1 mouse_genomes_project 7 42428442 42439927 - MGP_AJ_P0083494 Zfp715 protein_coding protein_coding MGP_AJ_T0085845.1 MGP_AJ_G0032797.1 mouse_genomes_project 7 108914380 108915325 - MGP_AJ_P0085845 protein_coding protein_coding MGP_AJ_T0008866.1 MGP_AJ_G0007158.1 mouse_genomes_project 7 38970300 38978034 + 4933404I11Rik lincRNA lincRNA MGP_AJ_T0102841.1 MGP_AJ_G0040581.1 mouse_genomes_project 7 47152540 47153314 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0086147.1 MGP_AJ_G0032876.1 mouse_genomes_project 7 118105782 118373246 + Xylt1 protein_coding retained_intron MGP_AJ_T0086148.1 MGP_AJ_G0032876.1 mouse_genomes_project 7 118105782 118407832 + MGP_AJ_P0086148 Xylt1 protein_coding protein_coding MGP_AJ_T0086149.1 MGP_AJ_G0032876.1 mouse_genomes_project 7 118208341 118286315 + Xylt1 protein_coding retained_intron MGP_AJ_T0084321.1 MGP_AJ_G0032317.1 mouse_genomes_project 7 64262908 64269084 + Mcee protein_coding processed_transcript MGP_AJ_T0084322.1 MGP_AJ_G0032317.1 mouse_genomes_project 7 64262946 64282522 + MGP_AJ_P0084322 Mcee protein_coding protein_coding MGP_AJ_T0084323.1 MGP_AJ_G0032317.1 mouse_genomes_project 7 64263041 64282518 + MGP_AJ_P0084323 Mcee protein_coding protein_coding MGP_AJ_T0084324.1 MGP_AJ_G0032317.1 mouse_genomes_project 7 64263076 64282518 + MGP_AJ_P0084324 Mcee protein_coding protein_coding MGP_AJ_T0011699.1 MGP_AJ_G0009821.1 mouse_genomes_project 7 143571991 143572062 + Gm27483 misc_RNA misc_RNA MGP_AJ_T0010864.1 MGP_AJ_G0008986.1 mouse_genomes_project 7 44494478 44494543 + Mir150 miRNA miRNA MGP_AJ_T0084409.1 MGP_AJ_G0032334.1 mouse_genomes_project 7 66581181 66662418 + MGP_AJ_P0084409 Cers3 protein_coding protein_coding MGP_AJ_T0010883.1 MGP_AJ_G0009005.1 mouse_genomes_project 7 61625776 61625846 - Gm23873 miRNA miRNA MGP_AJ_T0087443.1 MGP_AJ_G0033142.1 mouse_genomes_project 7 140995969 140998902 - MGP_AJ_P0087443 Msx3 protein_coding protein_coding MGP_AJ_T0087444.1 MGP_AJ_G0033142.1 mouse_genomes_project 7 140996186 140998901 - MGP_AJ_P0087444 Msx3 protein_coding protein_coding MGP_AJ_T0002248.1 MGP_AJ_G0002160.1 mouse_genomes_project 7 72483410 72483910 + TEC TEC MGP_AJ_T0082182.1 MGP_AJ_G0031790.1 mouse_genomes_project 7 21688778 21689751 + MGP_AJ_P0082182 Vmn1r180 protein_coding protein_coding MGP_AJ_T0085858.1 MGP_AJ_G0032810.1 mouse_genomes_project 7 109278110 109279185 - MGP_AJ_P0085858 Olfr509 protein_coding protein_coding MGP_AJ_T0082688.1 MGP_AJ_G0031921.1 mouse_genomes_project 7 26500497 26502968 - MGP_AJ_P0082688 Zfp36 protein_coding protein_coding MGP_AJ_T0085673.1 MGP_AJ_G0032721.1 mouse_genomes_project 7 105573230 105574318 - MGP_AJ_P0085673 protein_coding protein_coding MGP_AJ_T0102885.1 MGP_AJ_G0040625.1 mouse_genomes_project 7 86532192 86532820 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0100157.1 MGP_AJ_G0038123.1 mouse_genomes_project 7 73524941 73525046 - Gm26176 snRNA snRNA MGP_AJ_T0082763.1 MGP_AJ_G0031941.1 mouse_genomes_project 7 26974659 26981437 + Ech1 protein_coding retained_intron MGP_AJ_T0082764.1 MGP_AJ_G0031941.1 mouse_genomes_project 7 26974659 26983542 + MGP_AJ_P0082764 Ech1 protein_coding protein_coding MGP_AJ_T0082765.1 MGP_AJ_G0031941.1 mouse_genomes_project 7 26974791 26976099 + Ech1 protein_coding retained_intron MGP_AJ_T0082766.1 MGP_AJ_G0031941.1 mouse_genomes_project 7 26975400 26982528 + Ech1 protein_coding processed_transcript MGP_AJ_T0082767.1 MGP_AJ_G0031941.1 mouse_genomes_project 7 26975646 26983542 + MGP_AJ_P0082767 Ech1 protein_coding protein_coding MGP_AJ_T0082768.1 MGP_AJ_G0031941.1 mouse_genomes_project 7 26981445 26983542 + Ech1 protein_coding retained_intron MGP_AJ_T0082769.1 MGP_AJ_G0031941.1 mouse_genomes_project 7 26982545 26983542 + Ech1 protein_coding retained_intron MGP_AJ_T0083082.1 MGP_AJ_G0032012.1 mouse_genomes_project 7 28839631 28841911 - MGP_AJ_P0083082 Etv2 protein_coding protein_coding MGP_AJ_T0086336.1 MGP_AJ_G0032927.1 mouse_genomes_project 7 122521645 122555824 + MGP_AJ_P0086336 Scnn1g protein_coding protein_coding MGP_AJ_T0083932.1 MGP_AJ_G0032214.1 mouse_genomes_project 7 45021613 45033192 + MGP_AJ_P0083932 Rasip1 protein_coding protein_coding MGP_AJ_T0082163.1 MGP_AJ_G0031777.1 mouse_genomes_project 7 17558523 17580877 - MGP_AJ_P0082163 Pvr protein_coding protein_coding MGP_AJ_T0082164.1 MGP_AJ_G0031777.1 mouse_genomes_project 7 17560018 17566044 - Pvr protein_coding retained_intron MGP_AJ_T0082165.1 MGP_AJ_G0031777.1 mouse_genomes_project 7 17575494 17580830 - Pvr protein_coding retained_intron MGP_AJ_T0082166.1 MGP_AJ_G0031777.1 mouse_genomes_project 7 17576993 17580830 - Pvr protein_coding retained_intron MGP_AJ_T0081252.1 MGP_AJ_G0031490.1 mouse_genomes_project 7 196844 206013 + MGP_AJ_P0081252 Myadm protein_coding protein_coding MGP_AJ_T0081254.1 MGP_AJ_G0031490.1 mouse_genomes_project 7 198298 207078 + MGP_AJ_P0081254 Myadm protein_coding protein_coding MGP_AJ_T0081255.1 MGP_AJ_G0031490.1 mouse_genomes_project 7 198339 208171 + MGP_AJ_P0081255 Myadm protein_coding protein_coding MGP_AJ_T0081256.1 MGP_AJ_G0031490.1 mouse_genomes_project 7 199254 204707 + MGP_AJ_P0081256 Myadm protein_coding protein_coding MGP_AJ_T0081257.1 MGP_AJ_G0031490.1 mouse_genomes_project 7 200850 207051 + MGP_AJ_P0081257 Myadm protein_coding protein_coding MGP_AJ_T0002202.1 MGP_AJ_G0002114.1 mouse_genomes_project 7 32805873 32808507 - TEC TEC MGP_AJ_T0085574.1 MGP_AJ_G0032652.1 mouse_genomes_project 7 104176673 104177739 - MGP_AJ_P0085574 Olfr630 protein_coding protein_coding MGP_AJ_T0009047.1 MGP_AJ_G0007280.1 mouse_genomes_project 7 130495363 130565930 + Gm44868 lincRNA lincRNA MGP_AJ_T0009048.1 MGP_AJ_G0007280.1 mouse_genomes_project 7 130495451 130499120 + Gm44868 lincRNA lincRNA MGP_AJ_T0085515.1 MGP_AJ_G0032597.1 mouse_genomes_project 7 103029623 103030646 + MGP_AJ_P0085515 Olfr556 protein_coding protein_coding MGP_AJ_T0102819.1 MGP_AJ_G0040559.1 mouse_genomes_project 7 41287689 41287931 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0083622.1 MGP_AJ_G0032140.1 mouse_genomes_project 7 43782997 43816730 + MGP_AJ_P0083622 Lrrc4b protein_coding protein_coding MGP_AJ_T0083623.1 MGP_AJ_G0032140.1 mouse_genomes_project 7 43796299 43818720 + MGP_AJ_P0083623 Lrrc4b protein_coding protein_coding MGP_AJ_T0083624.1 MGP_AJ_G0032140.1 mouse_genomes_project 7 43796551 43816776 + MGP_AJ_P0083624 Lrrc4b protein_coding protein_coding MGP_AJ_T0100161.1 MGP_AJ_G0038127.1 mouse_genomes_project 7 84261878 84262036 + Gm22177 snRNA snRNA MGP_AJ_T0102829.1 MGP_AJ_G0040569.1 mouse_genomes_project 7 43409469 43574827 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0085775.1 MGP_AJ_G0032744.1 mouse_genomes_project 7 106164786 106172097 - MGP_AJ_P0085775 Tpp1 protein_coding protein_coding MGP_AJ_T0011683.1 MGP_AJ_G0009805.1 mouse_genomes_project 7 35239533 35239829 - Gm24550 misc_RNA misc_RNA MGP_AJ_T0084325.1 MGP_AJ_G0032318.1 mouse_genomes_project 7 64351256 64590029 + MGP_AJ_P0084325 Apba2 protein_coding protein_coding MGP_AJ_T0084326.1 MGP_AJ_G0032318.1 mouse_genomes_project 7 64351499 64531536 + MGP_AJ_P0084326 Apba2 protein_coding protein_coding MGP_AJ_T0084327.1 MGP_AJ_G0032318.1 mouse_genomes_project 7 64351688 64531600 + MGP_AJ_P0084327 Apba2 protein_coding protein_coding MGP_AJ_T0084328.1 MGP_AJ_G0032318.1 mouse_genomes_project 7 64477840 64590009 + MGP_AJ_P0084328 Apba2 protein_coding protein_coding MGP_AJ_T0084329.1 MGP_AJ_G0032318.1 mouse_genomes_project 7 64565576 64580688 + Apba2 protein_coding processed_transcript MGP_AJ_T0084330.1 MGP_AJ_G0032318.1 mouse_genomes_project 7 64580008 64589521 + Apba2 protein_coding processed_transcript MGP_AJ_T0084331.1 MGP_AJ_G0032318.1 mouse_genomes_project 7 64580752 64589552 + MGP_AJ_P0084331 Apba2 protein_coding protein_coding MGP_AJ_T0082555.1 MGP_AJ_G0031886.1 mouse_genomes_project 7 25332415 25353812 - MGP_AJ_P0082555 Ltbp4 protein_coding protein_coding MGP_AJ_T0084089.1 MGP_AJ_G0032255.1 mouse_genomes_project 7 46314479 46345863 - MGP_AJ_P0084089 Tsg101 protein_coding protein_coding MGP_AJ_T0084090.1 MGP_AJ_G0032255.1 mouse_genomes_project 7 46314557 46316568 - Tsg101 protein_coding processed_transcript MGP_AJ_T0084091.1 MGP_AJ_G0032255.1 mouse_genomes_project 7 46326539 46340305 - MGP_AJ_P0084091 Tsg101 protein_coding protein_coding MGP_AJ_T0084092.1 MGP_AJ_G0032255.1 mouse_genomes_project 7 46332460 46334917 - Tsg101 protein_coding retained_intron MGP_AJ_T0084093.1 MGP_AJ_G0032255.1 mouse_genomes_project 7 46332922 46345831 - MGP_AJ_P0084093 Tsg101 protein_coding protein_coding MGP_AJ_T0083096.1 MGP_AJ_G0032017.1 mouse_genomes_project 7 28911388 28920045 + Atp4a protein_coding retained_intron MGP_AJ_T0083097.1 MGP_AJ_G0032017.1 mouse_genomes_project 7 28911388 28924772 + MGP_AJ_P0083097 Atp4a protein_coding protein_coding MGP_AJ_T0083098.1 MGP_AJ_G0032017.1 mouse_genomes_project 7 28911411 28924771 + MGP_AJ_P0083098 Atp4a protein_coding protein_coding MGP_AJ_T0083099.1 MGP_AJ_G0032017.1 mouse_genomes_project 7 28917008 28919794 + MGP_AJ_P0083099 Atp4a protein_coding nonsense_mediated_decay MGP_AJ_T0083100.1 MGP_AJ_G0032017.1 mouse_genomes_project 7 28921575 28924428 + Atp4a protein_coding retained_intron MGP_AJ_T0102861.1 MGP_AJ_G0040601.1 mouse_genomes_project 7 84965017 84968417 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0086608.1 MGP_AJ_G0032974.1 mouse_genomes_project 7 127491652 127496794 - MGP_AJ_P0086608 Sult1a1 protein_coding protein_coding MGP_AJ_T0086609.1 MGP_AJ_G0032974.1 mouse_genomes_project 7 127491657 127496719 - MGP_AJ_P0086609 Sult1a1 protein_coding protein_coding MGP_AJ_T0086610.1 MGP_AJ_G0032974.1 mouse_genomes_project 7 127491658 127496719 - MGP_AJ_P0086610 Sult1a1 protein_coding protein_coding MGP_AJ_T0086611.1 MGP_AJ_G0032974.1 mouse_genomes_project 7 127493055 127496737 - MGP_AJ_P0086611 Sult1a1 protein_coding protein_coding MGP_AJ_T0018399.1 MGP_AJ_G0015659.1 mouse_genomes_project 7 97127893 97165923 - C230038L03Rik processed_transcript antisense MGP_AJ_T0018400.1 MGP_AJ_G0015659.1 mouse_genomes_project 7 97139795 97169031 - C230038L03Rik processed_transcript processed_transcript MGP_AJ_T0018401.1 MGP_AJ_G0015659.1 mouse_genomes_project 7 97166466 97170371 - C230038L03Rik processed_transcript antisense MGP_AJ_T0018402.1 MGP_AJ_G0015659.1 mouse_genomes_project 7 97166798 97170777 - C230038L03Rik processed_transcript antisense MGP_AJ_T0087254.1 MGP_AJ_G0033098.1 mouse_genomes_project 7 133746761 133772814 - MGP_AJ_P0087254 Mettl10 protein_coding protein_coding MGP_AJ_T0087255.1 MGP_AJ_G0033098.1 mouse_genomes_project 7 133746913 133772757 - MGP_AJ_P0087255 Mettl10 protein_coding protein_coding MGP_AJ_T0087256.1 MGP_AJ_G0033098.1 mouse_genomes_project 7 133747085 133772520 - Mettl10 protein_coding processed_transcript MGP_AJ_T0087257.1 MGP_AJ_G0033098.1 mouse_genomes_project 7 133750664 133772756 - MGP_AJ_P0087257 Mettl10 protein_coding nonsense_mediated_decay MGP_AJ_T0087258.1 MGP_AJ_G0033098.1 mouse_genomes_project 7 133750672 133772726 - MGP_AJ_P0087258 Mettl10 protein_coding nonsense_mediated_decay MGP_AJ_T0087259.1 MGP_AJ_G0033098.1 mouse_genomes_project 7 133770246 133772780 - Mettl10 protein_coding processed_transcript MGP_AJ_T0088002.1 MGP_AJ_G0033276.1 mouse_genomes_project 7 145921489 145925926 + MGP_AJ_P0088002 Fgf15 protein_coding protein_coding MGP_AJ_T0082534.1 MGP_AJ_G0031883.1 mouse_genomes_project 7 25248998 25275141 + MGP_AJ_P0082534 Coq8b protein_coding protein_coding MGP_AJ_T0082535.1 MGP_AJ_G0031883.1 mouse_genomes_project 7 25250343 25275135 + MGP_AJ_P0082535 Coq8b protein_coding protein_coding MGP_AJ_T0082536.1 MGP_AJ_G0031883.1 mouse_genomes_project 7 25250349 25275136 + MGP_AJ_P0082536 Coq8b protein_coding nonsense_mediated_decay MGP_AJ_T0082537.1 MGP_AJ_G0031883.1 mouse_genomes_project 7 25257046 25260818 + Coq8b protein_coding processed_transcript MGP_AJ_T0082538.1 MGP_AJ_G0031883.1 mouse_genomes_project 7 25257307 25260111 + Coq8b protein_coding retained_intron MGP_AJ_T0082539.1 MGP_AJ_G0031883.1 mouse_genomes_project 7 25267372 25275134 + Coq8b protein_coding retained_intron MGP_AJ_T0082540.1 MGP_AJ_G0031883.1 mouse_genomes_project 7 25267574 25274604 + Coq8b protein_coding processed_transcript MGP_AJ_T0088012.1 MGP_AJ_G0033280.1 mouse_genomes_project 7 146340427 146349167 + MGP_AJ_P0088012 Mrgprf protein_coding protein_coding MGP_AJ_T0088013.1 MGP_AJ_G0033280.1 mouse_genomes_project 7 146340498 146348959 + MGP_AJ_P0088013 Mrgprf protein_coding protein_coding MGP_AJ_T0005247.1 MGP_AJ_G0004459.1 mouse_genomes_project 7 92918838 92926131 - 4632427E13Rik antisense antisense MGP_AJ_T0005248.1 MGP_AJ_G0004459.1 mouse_genomes_project 7 92922308 92926140 - 4632427E13Rik antisense antisense MGP_AJ_T0005249.1 MGP_AJ_G0004459.1 mouse_genomes_project 7 92922329 92926140 - 4632427E13Rik antisense antisense MGP_AJ_T0005250.1 MGP_AJ_G0004459.1 mouse_genomes_project 7 92925377 92926131 - 4632427E13Rik antisense antisense MGP_AJ_T0085601.1 MGP_AJ_G0032677.1 mouse_genomes_project 7 104542864 104544779 - MGP_AJ_P0085601 4931431F19Rik protein_coding protein_coding MGP_AJ_T0083691.1 MGP_AJ_G0032149.1 mouse_genomes_project 7 43930193 43943054 + Napsa protein_coding retained_intron MGP_AJ_T0083692.1 MGP_AJ_G0032149.1 mouse_genomes_project 7 43930193 43946725 + MGP_AJ_P0083692 Napsa protein_coding protein_coding MGP_AJ_T0087220.1 MGP_AJ_G0033087.1 mouse_genomes_project 7 132329011 132367216 + MGP_AJ_P0087220 Acadsb protein_coding protein_coding MGP_AJ_T0087221.1 MGP_AJ_G0033087.1 mouse_genomes_project 7 132329113 132365768 + MGP_AJ_P0087221 Acadsb protein_coding protein_coding MGP_AJ_T0087222.1 MGP_AJ_G0033087.1 mouse_genomes_project 7 132342263 132347817 + Acadsb protein_coding retained_intron MGP_AJ_T0087223.1 MGP_AJ_G0033087.1 mouse_genomes_project 7 132342298 132346617 + Acadsb protein_coding retained_intron MGP_AJ_T0087224.1 MGP_AJ_G0033087.1 mouse_genomes_project 7 132346410 132351157 + Acadsb protein_coding retained_intron MGP_AJ_T0087225.1 MGP_AJ_G0033087.1 mouse_genomes_project 7 132347637 132367214 + Acadsb protein_coding retained_intron MGP_AJ_T0087226.1 MGP_AJ_G0033087.1 mouse_genomes_project 7 132353258 132356532 + Acadsb protein_coding retained_intron MGP_AJ_T0085764.1 MGP_AJ_G0032743.1 mouse_genomes_project 7 106159332 106164301 - MGP_AJ_P0085764 Taf10 protein_coding protein_coding MGP_AJ_T0085772.1 MGP_AJ_G0032743.1 mouse_genomes_project 7 106162835 106164022 - Taf10 protein_coding retained_intron MGP_AJ_T0085773.1 MGP_AJ_G0032743.1 mouse_genomes_project 7 106162845 106163550 - Taf10 protein_coding retained_intron MGP_AJ_T0085774.1 MGP_AJ_G0032743.1 mouse_genomes_project 7 106163176 106164282 - Taf10 protein_coding retained_intron MGP_AJ_T0102838.1 MGP_AJ_G0040578.1 mouse_genomes_project 7 47061323 47153315 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0087172.1 MGP_AJ_G0033074.1 mouse_genomes_project 7 131380243 131396007 - MGP_AJ_P0087172 Nsmce4a protein_coding protein_coding MGP_AJ_T0087173.1 MGP_AJ_G0033074.1 mouse_genomes_project 7 131380253 131384270 - Nsmce4a protein_coding retained_intron MGP_AJ_T0087174.1 MGP_AJ_G0033074.1 mouse_genomes_project 7 131381482 131422304 - MGP_AJ_P0087174 Nsmce4a protein_coding protein_coding MGP_AJ_T0087175.1 MGP_AJ_G0033074.1 mouse_genomes_project 7 131383845 131387804 - Nsmce4a protein_coding retained_intron MGP_AJ_T0087176.1 MGP_AJ_G0033074.1 mouse_genomes_project 7 131385279 131394592 - MGP_AJ_P0087176 Nsmce4a protein_coding nonsense_mediated_decay MGP_AJ_T0087177.1 MGP_AJ_G0033074.1 mouse_genomes_project 7 131388004 131391470 - Nsmce4a protein_coding retained_intron MGP_AJ_T0005165.1 MGP_AJ_G0004399.1 mouse_genomes_project 7 23074802 23076373 + 9130221H12Rik antisense antisense MGP_AJ_T0005166.1 MGP_AJ_G0004399.1 mouse_genomes_project 7 23074838 23076379 + 9130221H12Rik antisense antisense MGP_AJ_T0010922.1 MGP_AJ_G0009044.1 mouse_genomes_project 7 129133810 129133877 - Mir3103 miRNA miRNA MGP_AJ_T0082015.1 MGP_AJ_G0031735.1 mouse_genomes_project 7 16739256 16759324 - MGP_AJ_P0082015 Gm4969 protein_coding protein_coding MGP_AJ_T0082016.1 MGP_AJ_G0031735.1 mouse_genomes_project 7 16741761 16759297 - MGP_AJ_P0082016 Gm4969 protein_coding nonsense_mediated_decay MGP_AJ_T0101399.1 MGP_AJ_G0039365.1 mouse_genomes_project 7 26473493 26473618 + AF357399 snoRNA snoRNA MGP_AJ_T0086192.1 MGP_AJ_G0032887.1 mouse_genomes_project 7 119484470 119587542 + MGP_AJ_P0086192 9030624J02Rik protein_coding protein_coding MGP_AJ_T0086193.1 MGP_AJ_G0032887.1 mouse_genomes_project 7 119484968 119526381 + 9030624J02Rik protein_coding processed_transcript MGP_AJ_T0086194.1 MGP_AJ_G0032887.1 mouse_genomes_project 7 119484983 119504408 + MGP_AJ_P0086194 9030624J02Rik protein_coding protein_coding MGP_AJ_T0086195.1 MGP_AJ_G0032887.1 mouse_genomes_project 7 119484983 119586065 + MGP_AJ_P0086195 9030624J02Rik protein_coding protein_coding MGP_AJ_T0086196.1 MGP_AJ_G0032887.1 mouse_genomes_project 7 119484983 119586055 + MGP_AJ_P0086196 9030624J02Rik protein_coding protein_coding MGP_AJ_T0086197.1 MGP_AJ_G0032887.1 mouse_genomes_project 7 119484985 119490627 + 9030624J02Rik protein_coding retained_intron MGP_AJ_T0086198.1 MGP_AJ_G0032887.1 mouse_genomes_project 7 119490858 119508695 + 9030624J02Rik protein_coding retained_intron MGP_AJ_T0086199.1 MGP_AJ_G0032887.1 mouse_genomes_project 7 119495072 119496629 + 9030624J02Rik protein_coding retained_intron MGP_AJ_T0086200.1 MGP_AJ_G0032887.1 mouse_genomes_project 7 119506374 119586063 + MGP_AJ_P0086200 9030624J02Rik protein_coding protein_coding MGP_AJ_T0086201.1 MGP_AJ_G0032887.1 mouse_genomes_project 7 119537122 119569997 + MGP_AJ_P0086201 9030624J02Rik protein_coding protein_coding MGP_AJ_T0086202.1 MGP_AJ_G0032887.1 mouse_genomes_project 7 119546726 119578558 + 9030624J02Rik protein_coding retained_intron MGP_AJ_T0086203.1 MGP_AJ_G0032887.1 mouse_genomes_project 7 119548579 119555278 + 9030624J02Rik protein_coding retained_intron MGP_AJ_T0086204.1 MGP_AJ_G0032887.1 mouse_genomes_project 7 119565576 119570221 + 9030624J02Rik protein_coding retained_intron MGP_AJ_T0086205.1 MGP_AJ_G0032887.1 mouse_genomes_project 7 119568369 119585875 + 9030624J02Rik protein_coding processed_transcript MGP_AJ_T0087773.1 MGP_AJ_G0033226.1 mouse_genomes_project 7 143058588 143074371 - MGP_AJ_P0087773 Dusp8 protein_coding protein_coding MGP_AJ_T0087774.1 MGP_AJ_G0033226.1 mouse_genomes_project 7 143062692 143074942 - MGP_AJ_P0087774 Dusp8 protein_coding protein_coding MGP_AJ_T0101458.1 MGP_AJ_G0039424.1 mouse_genomes_project 7 143134449 143134543 + Gm25370 snoRNA snoRNA MGP_AJ_T0085862.1 MGP_AJ_G0032814.1 mouse_genomes_project 7 109452536 109453469 - MGP_AJ_P0085862 Olfr514 protein_coding protein_coding MGP_AJ_T0015838.1 MGP_AJ_G0013933.1 mouse_genomes_project 7 56818554 56819157 + processed_pseudogene processed_pseudogene MGP_AJ_T0005271.1 MGP_AJ_G0004474.1 mouse_genomes_project 7 116707159 116726593 + Gm45025 antisense antisense MGP_AJ_T0082116.1 MGP_AJ_G0031765.1 mouse_genomes_project 7 17321204 17326152 - MGP_AJ_P0082116 Gm44805 protein_coding protein_coding MGP_AJ_T0082117.1 MGP_AJ_G0031765.1 mouse_genomes_project 7 17321209 17323208 - MGP_AJ_P0082117 Gm44805 protein_coding protein_coding MGP_AJ_T0082118.1 MGP_AJ_G0031765.1 mouse_genomes_project 7 17321209 17331180 - MGP_AJ_P0082118 Gm44805 protein_coding protein_coding MGP_AJ_T0082119.1 MGP_AJ_G0031765.1 mouse_genomes_project 7 17321209 17327229 - MGP_AJ_P0082119 Gm44805 protein_coding protein_coding MGP_AJ_T0082120.1 MGP_AJ_G0031765.1 mouse_genomes_project 7 17322516 17331193 - MGP_AJ_P0082120 Gm44805 protein_coding protein_coding MGP_AJ_T0015938.1 MGP_AJ_G0014033.1 mouse_genomes_project 7 128243078 128243366 + processed_pseudogene processed_pseudogene MGP_AJ_T0085530.1 MGP_AJ_G0032611.1 mouse_genomes_project 7 103297689 103298730 + MGP_AJ_P0085530 Olfr574 protein_coding protein_coding MGP_AJ_T0084116.1 MGP_AJ_G0032271.1 mouse_genomes_project 7 48452119 48459257 - MGP_AJ_P0084116 Mrgprb2 protein_coding protein_coding MGP_AJ_T0101410.1 MGP_AJ_G0039376.1 mouse_genomes_project 7 44500021 44500104 - Snord32a snoRNA snoRNA MGP_AJ_T0002215.1 MGP_AJ_G0002127.1 mouse_genomes_project 7 38246224 38248579 - TEC TEC MGP_AJ_T0015748.1 MGP_AJ_G0013843.1 mouse_genomes_project 7 23461950 23462527 + processed_pseudogene processed_pseudogene MGP_AJ_T0086323.1 MGP_AJ_G0032921.1 mouse_genomes_project 7 121788824 121790669 - MGP_AJ_P0086323 protein_coding protein_coding MGP_AJ_T0083962.1 MGP_AJ_G0032224.1 mouse_genomes_project 7 45121084 45121791 - MGP_AJ_P0083962 Spaca4 protein_coding protein_coding MGP_AJ_T0102886.1 MGP_AJ_G0040626.1 mouse_genomes_project 7 86625467 86626373 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0015689.1 MGP_AJ_G0013784.1 mouse_genomes_project 7 1088722 1089595 - processed_pseudogene processed_pseudogene MGP_AJ_T0087488.1 MGP_AJ_G0033159.1 mouse_genomes_project 7 141350269 141351184 - MGP_AJ_P0087488 Olfr531 protein_coding protein_coding MGP_AJ_T0084144.1 MGP_AJ_G0032277.1 mouse_genomes_project 7 49546621 49551964 - MGP_AJ_P0084144 Dbx1 protein_coding protein_coding MGP_AJ_T0086243.1 MGP_AJ_G0032901.1 mouse_genomes_project 7 120499473 120524677 - MGP_AJ_P0086243 Eri2 protein_coding protein_coding MGP_AJ_T0086244.1 MGP_AJ_G0032901.1 mouse_genomes_project 7 120502740 120524677 - MGP_AJ_P0086244 Eri2 protein_coding protein_coding MGP_AJ_T0086248.1 MGP_AJ_G0032901.1 mouse_genomes_project 7 120513296 120524685 - Eri2 protein_coding retained_intron MGP_AJ_T0086249.1 MGP_AJ_G0032901.1 mouse_genomes_project 7 120514544 120524692 - MGP_AJ_P0086249 Eri2 protein_coding nonsense_mediated_decay MGP_AJ_T0086250.1 MGP_AJ_G0032901.1 mouse_genomes_project 7 120514561 120524669 - MGP_AJ_P0086250 Eri2 protein_coding nonsense_mediated_decay MGP_AJ_T0086251.1 MGP_AJ_G0032901.1 mouse_genomes_project 7 120515613 120524768 - MGP_AJ_P0086251 Eri2 protein_coding protein_coding MGP_AJ_T0086252.1 MGP_AJ_G0032901.1 mouse_genomes_project 7 120517211 120518670 - Eri2 protein_coding retained_intron MGP_AJ_T0082990.1 MGP_AJ_G0031995.1 mouse_genomes_project 7 28621633 28623766 - MGP_AJ_P0082990 Hcst protein_coding protein_coding MGP_AJ_T0010828.1 MGP_AJ_G0008950.1 mouse_genomes_project 7 127051 127120 + Mir295 miRNA miRNA MGP_AJ_T0015715.1 MGP_AJ_G0013810.1 mouse_genomes_project 7 11102125 11102339 + processed_pseudogene processed_pseudogene MGP_AJ_T0008820.1 MGP_AJ_G0007120.1 mouse_genomes_project 7 17027873 17038360 - Gm26852 lincRNA lincRNA MGP_AJ_T0085529.1 MGP_AJ_G0032610.1 mouse_genomes_project 7 103276636 103277593 + MGP_AJ_P0085529 Olfr572 protein_coding protein_coding MGP_AJ_T0100170.1 MGP_AJ_G0038136.1 mouse_genomes_project 7 104675150 104675258 - Gm24846 snRNA snRNA MGP_AJ_T0085389.1 MGP_AJ_G0032563.1 mouse_genomes_project 7 102161694 102166108 + MGP_AJ_P0085389 Phox2a protein_coding protein_coding MGP_AJ_T0101404.1 MGP_AJ_G0039370.1 mouse_genomes_project 7 43601244 43601334 + Snord88a snoRNA snoRNA MGP_AJ_T0085632.1 MGP_AJ_G0032689.1 mouse_genomes_project 7 104691837 104707451 - protein_coding retained_intron MGP_AJ_T0085633.1 MGP_AJ_G0032689.1 mouse_genomes_project 7 104691853 104694931 - MGP_AJ_P0085633 protein_coding protein_coding MGP_AJ_T0085634.1 MGP_AJ_G0032689.1 mouse_genomes_project 7 104693128 104703761 - MGP_AJ_P0085634 protein_coding protein_coding MGP_AJ_T0085635.1 MGP_AJ_G0032689.1 mouse_genomes_project 7 104693834 104694928 - protein_coding retained_intron MGP_AJ_T0085636.1 MGP_AJ_G0032689.1 mouse_genomes_project 7 104697678 104707349 - MGP_AJ_P0085636 protein_coding protein_coding MGP_AJ_T0084918.1 MGP_AJ_G0032434.1 mouse_genomes_project 7 84200693 84243192 - MGP_AJ_P0084918 Abhd17c protein_coding protein_coding MGP_AJ_T0084919.1 MGP_AJ_G0032434.1 mouse_genomes_project 7 84205579 84239115 - Abhd17c protein_coding processed_transcript MGP_AJ_T0085256.1 MGP_AJ_G0032539.1 mouse_genomes_project 7 100507481 100556448 + MGP_AJ_P0085256 Pgm2l1 protein_coding protein_coding MGP_AJ_T0085257.1 MGP_AJ_G0032539.1 mouse_genomes_project 7 100507775 100558511 + MGP_AJ_P0085257 Pgm2l1 protein_coding nonsense_mediated_decay MGP_AJ_T0085258.1 MGP_AJ_G0032539.1 mouse_genomes_project 7 100507797 100559970 + MGP_AJ_P0085258 Pgm2l1 protein_coding protein_coding MGP_AJ_T0085276.1 MGP_AJ_G0032543.1 mouse_genomes_project 7 100755295 100768423 + Ucp3 protein_coding retained_intron MGP_AJ_T0085277.1 MGP_AJ_G0032543.1 mouse_genomes_project 7 100755296 100769435 + MGP_AJ_P0085277 Ucp3 protein_coding protein_coding MGP_AJ_T0085278.1 MGP_AJ_G0032543.1 mouse_genomes_project 7 100755298 100768303 + MGP_AJ_P0085278 Ucp3 protein_coding protein_coding MGP_AJ_T0085279.1 MGP_AJ_G0032543.1 mouse_genomes_project 7 100755299 100768406 + Ucp3 protein_coding retained_intron MGP_AJ_T0085792.1 MGP_AJ_G0032752.1 mouse_genomes_project 7 107344904 107345951 - MGP_AJ_P0085792 Olfr697 protein_coding protein_coding MGP_AJ_T0005201.1 MGP_AJ_G0004427.1 mouse_genomes_project 7 36684207 36684423 - D530033B14Rik antisense antisense MGP_AJ_T0005202.1 MGP_AJ_G0004427.1 mouse_genomes_project 7 36684403 36696491 - D530033B14Rik antisense antisense MGP_AJ_T0005256.1 MGP_AJ_G0004465.1 mouse_genomes_project 7 97816407 97862972 - Rsf1os1 antisense antisense MGP_AJ_T0083475.1 MGP_AJ_G0032095.1 mouse_genomes_project 7 41229141 41285406 + MGP_AJ_P0083475 Vmn2r61 protein_coding protein_coding MGP_AJ_T0083476.1 MGP_AJ_G0032095.1 mouse_genomes_project 7 41249842 41274178 + Vmn2r61 protein_coding processed_transcript MGP_AJ_T0015830.1 MGP_AJ_G0013925.1 mouse_genomes_project 7 55416422 55416968 + processed_pseudogene processed_pseudogene MGP_AJ_T0010919.1 MGP_AJ_G0009041.1 mouse_genomes_project 7 128340046 128340183 + Mir7060 miRNA miRNA MGP_AJ_T0086814.1 MGP_AJ_G0033008.1 mouse_genomes_project 7 128040552 128045185 + MGP_AJ_P0086814 Mylpf protein_coding protein_coding MGP_AJ_T0086815.1 MGP_AJ_G0033008.1 mouse_genomes_project 7 128043424 128045950 + MGP_AJ_P0086815 Mylpf protein_coding protein_coding MGP_AJ_T0086816.1 MGP_AJ_G0033008.1 mouse_genomes_project 7 128044341 128045150 + MGP_AJ_P0086816 Mylpf protein_coding protein_coding MGP_AJ_T0086817.1 MGP_AJ_G0033008.1 mouse_genomes_project 7 128044776 128045118 + Mylpf protein_coding retained_intron MGP_AJ_T0086818.1 MGP_AJ_G0033008.1 mouse_genomes_project 7 128045558 128045950 + Mylpf protein_coding retained_intron MGP_AJ_T0015853.1 MGP_AJ_G0013948.1 mouse_genomes_project 7 72589215 72590203 - processed_pseudogene processed_pseudogene MGP_AJ_T0102768.1 MGP_AJ_G0040509.1 mouse_genomes_project 7 9620598 9621210 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0102754.1 MGP_AJ_G0040495.1 mouse_genomes_project 7 9059985 9060377 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0085618.1 MGP_AJ_G0032685.1 mouse_genomes_project 7 104660698 104672850 + MGP_AJ_P0085618 protein_coding protein_coding MGP_AJ_T0085619.1 MGP_AJ_G0032685.1 mouse_genomes_project 7 104660700 104672850 + MGP_AJ_P0085619 protein_coding protein_coding MGP_AJ_T0085621.1 MGP_AJ_G0032685.1 mouse_genomes_project 7 104660796 104675754 + MGP_AJ_P0085621 protein_coding protein_coding MGP_AJ_T0085622.1 MGP_AJ_G0032685.1 mouse_genomes_project 7 104660805 104672025 + MGP_AJ_P0085622 protein_coding protein_coding MGP_AJ_T0005286.1 MGP_AJ_G0004484.1 mouse_genomes_project 7 126383498 126384840 - Gm44876 antisense antisense MGP_AJ_T0010929.1 MGP_AJ_G0009051.1 mouse_genomes_project 7 140914349 140914421 - Mir202 miRNA miRNA MGP_AJ_T0098731.1 MGP_AJ_G0036715.1 mouse_genomes_project 7 129641225 129641343 - n-R5s158 rRNA rRNA MGP_AJ_T0005225.1 MGP_AJ_G0004443.1 mouse_genomes_project 7 74276699 74295459 + Gm7580 antisense antisense MGP_AJ_T0008829.1 MGP_AJ_G0007128.1 mouse_genomes_project 7 23696565 23700323 + Gm26707 lincRNA lincRNA MGP_AJ_T0086033.1 MGP_AJ_G0032855.1 mouse_genomes_project 7 113635009 113638504 + MGP_AJ_P0086033 Rassf10 protein_coding protein_coding MGP_AJ_T0102077.1 MGP_AJ_G0039855.1 mouse_genomes_project 7 43459942 43461510 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_AJ_T0102865.1 MGP_AJ_G0040605.1 mouse_genomes_project 7 85171144 85171530 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0085564.1 MGP_AJ_G0032642.1 mouse_genomes_project 7 103970670 103971624 - MGP_AJ_P0085564 Olfr616 protein_coding protein_coding MGP_AJ_T0084454.1 MGP_AJ_G0032340.1 mouse_genomes_project 7 67574242 67604123 - MGP_AJ_P0084454 Synm protein_coding protein_coding MGP_AJ_T0084455.1 MGP_AJ_G0032340.1 mouse_genomes_project 7 67574242 67604123 - MGP_AJ_P0084455 Synm protein_coding protein_coding MGP_AJ_T0018365.1 MGP_AJ_G0015647.1 mouse_genomes_project 7 48790595 48798589 + processed_transcript processed_transcript MGP_AJ_T0018366.1 MGP_AJ_G0015647.1 mouse_genomes_project 7 48793937 48799236 + processed_transcript processed_transcript MGP_AJ_T0081550.1 MGP_AJ_G0031558.1 mouse_genomes_project 7 2043661 2062287 + MGP_AJ_P0081550 Epn1 protein_coding protein_coding MGP_AJ_T0081551.1 MGP_AJ_G0031558.1 mouse_genomes_project 7 2043666 2053334 + MGP_AJ_P0081551 Epn1 protein_coding protein_coding MGP_AJ_T0081552.1 MGP_AJ_G0031558.1 mouse_genomes_project 7 2043694 2047266 + MGP_AJ_P0081552 Epn1 protein_coding protein_coding MGP_AJ_T0081553.1 MGP_AJ_G0031558.1 mouse_genomes_project 7 2043698 2062295 + MGP_AJ_P0081553 Epn1 protein_coding unknown_likely_coding MGP_AJ_T0081554.1 MGP_AJ_G0031558.1 mouse_genomes_project 7 2043719 2062285 + MGP_AJ_P0081554 Epn1 protein_coding protein_coding MGP_AJ_T0081555.1 MGP_AJ_G0031558.1 mouse_genomes_project 7 2047014 2059313 + Epn1 protein_coding processed_transcript MGP_AJ_T0081556.1 MGP_AJ_G0031558.1 mouse_genomes_project 7 2053210 2057091 + Epn1 protein_coding retained_intron MGP_AJ_T0082146.1 MGP_AJ_G0031772.1 mouse_genomes_project 7 17428666 17439185 - Cblc protein_coding processed_transcript MGP_AJ_T0082147.1 MGP_AJ_G0031772.1 mouse_genomes_project 7 17429410 17435224 - Cblc protein_coding processed_transcript MGP_AJ_T0082148.1 MGP_AJ_G0031772.1 mouse_genomes_project 7 17429503 17447707 - MGP_AJ_P0082148 Cblc protein_coding protein_coding MGP_AJ_T0082149.1 MGP_AJ_G0031772.1 mouse_genomes_project 7 17429503 17447723 - MGP_AJ_P0082149 Cblc protein_coding protein_coding MGP_AJ_T0082150.1 MGP_AJ_G0031772.1 mouse_genomes_project 7 17436682 17442371 - Cblc protein_coding processed_transcript MGP_AJ_T0082151.1 MGP_AJ_G0031772.1 mouse_genomes_project 7 17440501 17443342 - Cblc protein_coding processed_transcript MGP_AJ_T0082152.1 MGP_AJ_G0031772.1 mouse_genomes_project 7 17441980 17447719 - Cblc protein_coding retained_intron MGP_AJ_T0084337.1 MGP_AJ_G0032320.1 mouse_genomes_project 7 64699444 64705386 - MGP_AJ_P0084337 Ndnl2 protein_coding protein_coding MGP_AJ_T0015874.1 MGP_AJ_G0013969.1 mouse_genomes_project 7 85006143 85007268 - processed_pseudogene processed_pseudogene MGP_AJ_T0015862.1 MGP_AJ_G0013957.1 mouse_genomes_project 7 75712207 75712559 + processed_pseudogene processed_pseudogene MGP_AJ_T0086004.1 MGP_AJ_G0032851.1 mouse_genomes_project 7 112908019 113039029 + MGP_AJ_P0086004 Mical2 protein_coding protein_coding MGP_AJ_T0086005.1 MGP_AJ_G0032851.1 mouse_genomes_project 7 112908053 113031678 + MGP_AJ_P0086005 Mical2 protein_coding protein_coding MGP_AJ_T0086006.1 MGP_AJ_G0032851.1 mouse_genomes_project 7 112908053 112998801 + MGP_AJ_P0086006 Mical2 protein_coding protein_coding MGP_AJ_T0086007.1 MGP_AJ_G0032851.1 mouse_genomes_project 7 112953466 113037810 + MGP_AJ_P0086007 Mical2 protein_coding protein_coding MGP_AJ_T0086008.1 MGP_AJ_G0032851.1 mouse_genomes_project 7 112999414 113030801 + Mical2 protein_coding retained_intron MGP_AJ_T0086009.1 MGP_AJ_G0032851.1 mouse_genomes_project 7 113030038 113039029 + MGP_AJ_P0086009 Mical2 protein_coding protein_coding MGP_AJ_T0081545.1 MGP_AJ_G0031554.1 mouse_genomes_project 7 2014465 2016657 + MGP_AJ_P0081545 Zfp580 protein_coding protein_coding MGP_AJ_T0102896.1 MGP_AJ_G0040636.1 mouse_genomes_project 7 104045903 104047866 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0082511.1 MGP_AJ_G0031878.1 mouse_genomes_project 7 25174949 25193875 - MGP_AJ_P0082511 Gm21983 protein_coding nonsense_mediated_decay MGP_AJ_T0082923.1 MGP_AJ_G0031980.1 mouse_genomes_project 7 28378044 28390657 + MGP_AJ_P0082923 Gm5113 protein_coding protein_coding MGP_AJ_T0085609.1 MGP_AJ_G0032683.1 mouse_genomes_project 7 104636448 104645155 + Trim6 protein_coding retained_intron MGP_AJ_T0085610.1 MGP_AJ_G0032683.1 mouse_genomes_project 7 104636450 104651423 + MGP_AJ_P0085610 Trim6 protein_coding protein_coding MGP_AJ_T0085611.1 MGP_AJ_G0032683.1 mouse_genomes_project 7 104636492 104643544 + MGP_AJ_P0085611 Trim6 protein_coding protein_coding MGP_AJ_T0085612.1 MGP_AJ_G0032683.1 mouse_genomes_project 7 104637084 104643581 + MGP_AJ_P0085612 Trim6 protein_coding protein_coding MGP_AJ_T0085613.1 MGP_AJ_G0032683.1 mouse_genomes_project 7 104638817 104644452 + MGP_AJ_P0085613 Trim6 protein_coding protein_coding MGP_AJ_T0085614.1 MGP_AJ_G0032683.1 mouse_genomes_project 7 104643154 104649308 + MGP_AJ_P0085614 Trim6 protein_coding protein_coding MGP_AJ_T0082434.1 MGP_AJ_G0031854.1 mouse_genomes_project 7 23552881 23561619 + MGP_AJ_P0082434 B9d2 protein_coding protein_coding MGP_AJ_T0082435.1 MGP_AJ_G0031854.1 mouse_genomes_project 7 23552939 23558703 + MGP_AJ_P0082435 B9d2 protein_coding protein_coding MGP_AJ_T0082436.1 MGP_AJ_G0031854.1 mouse_genomes_project 7 23552957 23558474 + MGP_AJ_P0082436 B9d2 protein_coding protein_coding MGP_AJ_T0082437.1 MGP_AJ_G0031854.1 mouse_genomes_project 7 23553259 23561619 + MGP_AJ_P0082437 B9d2 protein_coding protein_coding MGP_AJ_T0085379.1 MGP_AJ_G0032562.1 mouse_genomes_project 7 102002817 102062450 + Clpb protein_coding retained_intron MGP_AJ_T0085380.1 MGP_AJ_G0032562.1 mouse_genomes_project 7 102002817 102130824 + MGP_AJ_P0085380 Clpb protein_coding protein_coding MGP_AJ_T0085381.1 MGP_AJ_G0032562.1 mouse_genomes_project 7 102002889 102128469 + MGP_AJ_P0085381 Clpb protein_coding protein_coding MGP_AJ_T0085382.1 MGP_AJ_G0032562.1 mouse_genomes_project 7 102002941 102028494 + Clpb protein_coding retained_intron MGP_AJ_T0085383.1 MGP_AJ_G0032562.1 mouse_genomes_project 7 102002959 102046077 + MGP_AJ_P0085383 Clpb protein_coding nonsense_mediated_decay MGP_AJ_T0085384.1 MGP_AJ_G0032562.1 mouse_genomes_project 7 102002960 102127549 + Clpb protein_coding retained_intron MGP_AJ_T0085385.1 MGP_AJ_G0032562.1 mouse_genomes_project 7 102021652 102104386 + MGP_AJ_P0085385 Clpb protein_coding protein_coding MGP_AJ_T0085386.1 MGP_AJ_G0032562.1 mouse_genomes_project 7 102022740 102091630 + MGP_AJ_P0085386 Clpb protein_coding protein_coding MGP_AJ_T0085387.1 MGP_AJ_G0032562.1 mouse_genomes_project 7 102104269 102110054 + Clpb protein_coding processed_transcript MGP_AJ_T0085388.1 MGP_AJ_G0032562.1 mouse_genomes_project 7 102104296 102126294 + Clpb protein_coding processed_transcript MGP_AJ_T0102913.1 MGP_AJ_G0040653.1 mouse_genomes_project 7 106248447 107205512 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0102821.1 MGP_AJ_G0040561.1 mouse_genomes_project 7 41371490 41371625 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0087057.1 MGP_AJ_G0033059.1 mouse_genomes_project 7 129081377 129082132 + Armc5 protein_coding processed_transcript MGP_AJ_T0087058.1 MGP_AJ_G0033059.1 mouse_genomes_project 7 129081392 129090224 + MGP_AJ_P0087058 Armc5 protein_coding protein_coding MGP_AJ_T0101424.1 MGP_AJ_G0039390.1 mouse_genomes_project 7 62487987 62488115 + Gm22494 snoRNA snoRNA MGP_AJ_T0015868.1 MGP_AJ_G0013963.1 mouse_genomes_project 7 80970121 80970445 + processed_pseudogene processed_pseudogene MGP_AJ_T0087990.1 MGP_AJ_G0033272.1 mouse_genomes_project 7 145584701 145589834 - MGP_AJ_P0087990 Fadd protein_coding protein_coding MGP_AJ_T0082139.1 MGP_AJ_G0031770.1 mouse_genomes_project 7 17365966 17399783 - MGP_AJ_P0082139 Nectin2 protein_coding protein_coding MGP_AJ_T0082140.1 MGP_AJ_G0031770.1 mouse_genomes_project 7 17373482 17399783 - MGP_AJ_P0082140 Nectin2 protein_coding protein_coding MGP_AJ_T0010913.1 MGP_AJ_G0009035.1 mouse_genomes_project 7 114367085 114367187 - Gm23700 miRNA miRNA MGP_AJ_T0084844.1 MGP_AJ_G0032414.1 mouse_genomes_project 7 81874364 81883495 - MGP_AJ_P0084844 3110040N11Rik protein_coding protein_coding MGP_AJ_T0084845.1 MGP_AJ_G0032414.1 mouse_genomes_project 7 81877110 81883518 - 3110040N11Rik protein_coding processed_transcript MGP_AJ_T0084846.1 MGP_AJ_G0032414.1 mouse_genomes_project 7 81877110 81882713 - 3110040N11Rik protein_coding processed_transcript MGP_AJ_T0084847.1 MGP_AJ_G0032414.1 mouse_genomes_project 7 81877129 81883158 - 3110040N11Rik protein_coding processed_transcript MGP_AJ_T0084848.1 MGP_AJ_G0032414.1 mouse_genomes_project 7 81877183 81883514 - MGP_AJ_P0084848 3110040N11Rik protein_coding nonsense_mediated_decay MGP_AJ_T0005260.1 MGP_AJ_G0004467.1 mouse_genomes_project 7 99919972 99925547 + Gm15635 antisense antisense MGP_AJ_T0005261.1 MGP_AJ_G0004467.1 mouse_genomes_project 7 99923630 99925458 + Gm15635 antisense antisense MGP_AJ_T0005262.1 MGP_AJ_G0004467.1 mouse_genomes_project 7 99923682 99925920 + Gm15635 antisense antisense MGP_AJ_T0085509.1 MGP_AJ_G0032591.1 mouse_genomes_project 7 102936904 102937942 + MGP_AJ_P0085509 Olfr550 protein_coding protein_coding MGP_AJ_T0101446.1 MGP_AJ_G0039412.1 mouse_genomes_project 7 115542212 115542344 - Gm24982 snoRNA snoRNA MGP_AJ_T0008919.1 MGP_AJ_G0007200.1 mouse_genomes_project 7 72993669 72995779 + 4933435G04Rik lincRNA lincRNA MGP_AJ_T0082822.1 MGP_AJ_G0031953.1 mouse_genomes_project 7 27338619 27345009 - MGP_AJ_P0082822 Psmd8 protein_coding protein_coding MGP_AJ_T0082823.1 MGP_AJ_G0031953.1 mouse_genomes_project 7 27338619 27345130 - MGP_AJ_P0082823 Psmd8 protein_coding protein_coding MGP_AJ_T0082824.1 MGP_AJ_G0031953.1 mouse_genomes_project 7 27338619 27345158 - MGP_AJ_P0082824 Psmd8 protein_coding protein_coding MGP_AJ_T0082115.1 MGP_AJ_G0031764.1 mouse_genomes_project 7 17280877 17314346 - MGP_AJ_P0082115 Clptm1 protein_coding protein_coding MGP_AJ_T0008830.1 MGP_AJ_G0007129.1 mouse_genomes_project 7 23741018 23755485 + Gm30146 lincRNA lincRNA MGP_AJ_T0082106.1 MGP_AJ_G0031763.1 mouse_genomes_project 7 17255593 17278735 - Relb protein_coding retained_intron MGP_AJ_T0082107.1 MGP_AJ_G0031763.1 mouse_genomes_project 7 17255593 17278735 - Relb protein_coding retained_intron MGP_AJ_T0082108.1 MGP_AJ_G0031763.1 mouse_genomes_project 7 17255593 17278735 - Relb protein_coding retained_intron MGP_AJ_T0082109.1 MGP_AJ_G0031763.1 mouse_genomes_project 7 17255593 17278735 - MGP_AJ_P0082109 Relb protein_coding protein_coding MGP_AJ_T0082110.1 MGP_AJ_G0031763.1 mouse_genomes_project 7 17255593 17278735 - MGP_AJ_P0082110 Relb protein_coding protein_coding MGP_AJ_T0082111.1 MGP_AJ_G0031763.1 mouse_genomes_project 7 17255599 17278735 - MGP_AJ_P0082111 Relb protein_coding protein_coding MGP_AJ_T0082112.1 MGP_AJ_G0031763.1 mouse_genomes_project 7 17265682 17278081 - Relb protein_coding processed_transcript MGP_AJ_T0082113.1 MGP_AJ_G0031763.1 mouse_genomes_project 7 17267080 17277770 - Relb protein_coding processed_transcript MGP_AJ_T0082114.1 MGP_AJ_G0031763.1 mouse_genomes_project 7 17267144 17277731 - Relb protein_coding processed_transcript MGP_AJ_T0102755.1 MGP_AJ_G0040496.1 mouse_genomes_project 7 9119898 9120863 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0002273.1 MGP_AJ_G0002184.1 mouse_genomes_project 7 79474377 79476563 + TEC TEC MGP_AJ_T0086740.1 MGP_AJ_G0032992.1 mouse_genomes_project 7 127773243 127776822 - MGP_AJ_P0086740 protein_coding protein_coding MGP_AJ_T0086741.1 MGP_AJ_G0032992.1 mouse_genomes_project 7 127773651 127777245 - MGP_AJ_P0086741 protein_coding protein_coding MGP_AJ_T0086742.1 MGP_AJ_G0032992.1 mouse_genomes_project 7 127773670 127777244 - MGP_AJ_P0086742 protein_coding protein_coding MGP_AJ_T0015793.1 MGP_AJ_G0013888.1 mouse_genomes_project 7 37558293 37561888 - processed_pseudogene processed_pseudogene MGP_AJ_T0011701.1 MGP_AJ_G0009823.1 mouse_genomes_project 7 144233698 144234158 + Gm27395 misc_RNA misc_RNA MGP_AJ_T0086332.1 MGP_AJ_G0032925.1 mouse_genomes_project 7 122170336 122176561 + MGP_AJ_P0086332 Hs3st2 protein_coding protein_coding MGP_AJ_T0086333.1 MGP_AJ_G0032925.1 mouse_genomes_project 7 122170767 122281618 + MGP_AJ_P0086333 Hs3st2 protein_coding protein_coding MGP_AJ_T0084318.1 MGP_AJ_G0032316.1 mouse_genomes_project 7 64246813 64262570 - MGP_AJ_P0084318 Mphosph10 protein_coding protein_coding MGP_AJ_T0084319.1 MGP_AJ_G0032316.1 mouse_genomes_project 7 64247562 64254821 - Mphosph10 protein_coding retained_intron MGP_AJ_T0084320.1 MGP_AJ_G0032316.1 mouse_genomes_project 7 64258288 64262538 - Mphosph10 protein_coding retained_intron MGP_AJ_T0085039.1 MGP_AJ_G0032486.1 mouse_genomes_project 7 92762332 92815988 - MGP_AJ_P0085039 Ankrd42 protein_coding protein_coding MGP_AJ_T0085040.1 MGP_AJ_G0032486.1 mouse_genomes_project 7 92764791 92816028 - MGP_AJ_P0085040 Ankrd42 protein_coding protein_coding MGP_AJ_T0085041.1 MGP_AJ_G0032486.1 mouse_genomes_project 7 92764807 92816022 - MGP_AJ_P0085041 Ankrd42 protein_coding nonsense_mediated_decay MGP_AJ_T0085042.1 MGP_AJ_G0032486.1 mouse_genomes_project 7 92779985 92785105 - Ankrd42 protein_coding retained_intron MGP_AJ_T0085043.1 MGP_AJ_G0032486.1 mouse_genomes_project 7 92783911 92815921 - Ankrd42 protein_coding retained_intron MGP_AJ_T0085044.1 MGP_AJ_G0032486.1 mouse_genomes_project 7 92784163 92816016 - Ankrd42 protein_coding processed_transcript MGP_AJ_T0018425.1 MGP_AJ_G0015673.1 mouse_genomes_project 7 129316481 129330611 + Gm45019 processed_transcript lincRNA MGP_AJ_T0018426.1 MGP_AJ_G0015673.1 mouse_genomes_project 7 129329257 129330610 + Gm45019 processed_transcript retained_intron MGP_AJ_T0101453.1 MGP_AJ_G0039419.1 mouse_genomes_project 7 125322718 125322861 + Gm23168 snoRNA snoRNA MGP_AJ_T0081598.1 MGP_AJ_G0031576.1 mouse_genomes_project 7 3368076 3383977 + MGP_AJ_P0081598 Zfp28 protein_coding protein_coding MGP_AJ_T0009040.1 MGP_AJ_G0007273.1 mouse_genomes_project 7 128285022 128289865 + Gm45184 lincRNA lincRNA MGP_AJ_T0083283.1 MGP_AJ_G0032055.1 mouse_genomes_project 7 32675657 32723627 - MGP_AJ_P0083283 4931406P16Rik protein_coding protein_coding MGP_AJ_T0083284.1 MGP_AJ_G0032055.1 mouse_genomes_project 7 32675849 32682010 - MGP_AJ_P0083284 4931406P16Rik protein_coding protein_coding MGP_AJ_T0083285.1 MGP_AJ_G0032055.1 mouse_genomes_project 7 32676850 32681821 - 4931406P16Rik protein_coding retained_intron MGP_AJ_T0083287.1 MGP_AJ_G0032055.1 mouse_genomes_project 7 32691586 32694762 - 4931406P16Rik protein_coding retained_intron MGP_AJ_T0083288.1 MGP_AJ_G0032055.1 mouse_genomes_project 7 32722388 32754292 - 4931406P16Rik protein_coding retained_intron MGP_AJ_T0083289.1 MGP_AJ_G0032055.1 mouse_genomes_project 7 32723907 32754287 - 4931406P16Rik protein_coding processed_transcript MGP_AJ_T0083290.1 MGP_AJ_G0032055.1 mouse_genomes_project 7 32723993 32746255 - 4931406P16Rik protein_coding processed_transcript MGP_AJ_T0083291.1 MGP_AJ_G0032055.1 mouse_genomes_project 7 32752808 32754250 - 4931406P16Rik protein_coding processed_transcript MGP_AJ_T0102062.1 MGP_AJ_G0039846.1 mouse_genomes_project 7 651423 660554 - transcribed_unprocessed_pseudogene retained_intron MGP_AJ_T0084952.1 MGP_AJ_G0032461.1 mouse_genomes_project 7 86990482 87002613 + MGP_AJ_P0084952 protein_coding protein_coding MGP_AJ_T0015888.1 MGP_AJ_G0013983.1 mouse_genomes_project 7 96651886 96652358 - processed_pseudogene processed_pseudogene MGP_AJ_T0100164.1 MGP_AJ_G0038130.1 mouse_genomes_project 7 91567129 91567235 - Gm22080 snRNA snRNA MGP_AJ_T0084457.1 MGP_AJ_G0032342.1 mouse_genomes_project 7 68089512 68117797 - MGP_AJ_P0084457 Pgpep1l protein_coding protein_coding MGP_AJ_T0102095.1 MGP_AJ_G0039865.1 mouse_genomes_project 7 106382058 106385651 - translated_unprocessed_pseudogene translated_unprocessed_pseudogene MGP_AJ_T0015847.1 MGP_AJ_G0013942.1 mouse_genomes_project 7 65233758 65234077 + processed_pseudogene processed_pseudogene MGP_AJ_T0098720.1 MGP_AJ_G0036704.1 mouse_genomes_project 7 13944681 13944800 + n-R5s151 rRNA rRNA MGP_AJ_T0085520.1 MGP_AJ_G0032602.1 mouse_genomes_project 7 103085565 103086587 - MGP_AJ_P0085520 Olfr559 protein_coding protein_coding MGP_AJ_T0010854.1 MGP_AJ_G0008976.1 mouse_genomes_project 7 28307344 28307440 - Gm23368 miRNA miRNA MGP_AJ_T0015827.1 MGP_AJ_G0013922.1 mouse_genomes_project 7 48078292 48078929 - processed_pseudogene processed_pseudogene MGP_AJ_T0085583.1 MGP_AJ_G0032659.1 mouse_genomes_project 7 104281044 104282544 - MGP_AJ_P0085583 Hbb-y protein_coding protein_coding MGP_AJ_T0087182.1 MGP_AJ_G0033076.1 mouse_genomes_project 7 131622368 131674866 + MGP_AJ_P0087182 Btbd16 protein_coding protein_coding MGP_AJ_T0015840.1 MGP_AJ_G0013935.1 mouse_genomes_project 7 58789369 58790515 - processed_pseudogene processed_pseudogene MGP_AJ_T0098466.1 MGP_AJ_G0036450.1 mouse_genomes_project 7 71209791 71210415 - pseudogene pseudogene MGP_AJ_T0085089.1 MGP_AJ_G0032499.1 mouse_genomes_project 7 97663093 97671221 + MGP_AJ_P0085089 Kctd14 protein_coding protein_coding MGP_AJ_T0085090.1 MGP_AJ_G0032499.1 mouse_genomes_project 7 97664974 97670162 + MGP_AJ_P0085090 Kctd14 protein_coding protein_coding MGP_AJ_T0085091.1 MGP_AJ_G0032499.1 mouse_genomes_project 7 97664974 97671216 + MGP_AJ_P0085091 Kctd14 protein_coding nonsense_mediated_decay MGP_AJ_T0085092.1 MGP_AJ_G0032499.1 mouse_genomes_project 7 97664974 97671219 + MGP_AJ_P0085092 Kctd14 protein_coding protein_coding MGP_AJ_T0085093.1 MGP_AJ_G0032499.1 mouse_genomes_project 7 97664974 97671219 + MGP_AJ_P0085093 Kctd14 protein_coding protein_coding MGP_AJ_T0085094.1 MGP_AJ_G0032499.1 mouse_genomes_project 7 97664992 97671218 + MGP_AJ_P0085094 Kctd14 protein_coding protein_coding MGP_AJ_T0083708.1 MGP_AJ_G0032156.1 mouse_genomes_project 7 44110904 44139951 + MGP_AJ_P0083708 Vrk3 protein_coding protein_coding MGP_AJ_T0083709.1 MGP_AJ_G0032156.1 mouse_genomes_project 7 44110976 44120591 + Vrk3 protein_coding retained_intron MGP_AJ_T0083710.1 MGP_AJ_G0032156.1 mouse_genomes_project 7 44111075 44122255 + MGP_AJ_P0083710 Vrk3 protein_coding protein_coding MGP_AJ_T0083711.1 MGP_AJ_G0032156.1 mouse_genomes_project 7 44111127 44139951 + MGP_AJ_P0083711 Vrk3 protein_coding nonsense_mediated_decay MGP_AJ_T0083712.1 MGP_AJ_G0032156.1 mouse_genomes_project 7 44111137 44125540 + MGP_AJ_P0083712 Vrk3 protein_coding protein_coding MGP_AJ_T0083713.1 MGP_AJ_G0032156.1 mouse_genomes_project 7 44111138 44127288 + MGP_AJ_P0083713 Vrk3 protein_coding protein_coding MGP_AJ_T0083714.1 MGP_AJ_G0032156.1 mouse_genomes_project 7 44111428 44116442 + MGP_AJ_P0083714 Vrk3 protein_coding protein_coding MGP_AJ_T0083715.1 MGP_AJ_G0032156.1 mouse_genomes_project 7 44114598 44121893 + Vrk3 protein_coding processed_transcript MGP_AJ_T0083716.1 MGP_AJ_G0032156.1 mouse_genomes_project 7 44114600 44121893 + Vrk3 protein_coding processed_transcript MGP_AJ_T0086971.1 MGP_AJ_G0033040.1 mouse_genomes_project 7 128665081 128693592 + Stx4a protein_coding processed_transcript MGP_AJ_T0086972.1 MGP_AJ_G0033040.1 mouse_genomes_project 7 128683182 128693592 + MGP_AJ_P0086972 Stx4a protein_coding protein_coding MGP_AJ_T0086973.1 MGP_AJ_G0033040.1 mouse_genomes_project 7 128683386 128693573 + MGP_AJ_P0086973 Stx4a protein_coding protein_coding MGP_AJ_T0086974.1 MGP_AJ_G0033040.1 mouse_genomes_project 7 128683388 128685363 + Stx4a protein_coding retained_intron MGP_AJ_T0086975.1 MGP_AJ_G0033040.1 mouse_genomes_project 7 128683396 128688037 + MGP_AJ_P0086975 Stx4a protein_coding nonsense_mediated_decay MGP_AJ_T0086976.1 MGP_AJ_G0033040.1 mouse_genomes_project 7 128684103 128688005 + Stx4a protein_coding retained_intron MGP_AJ_T0086977.1 MGP_AJ_G0033040.1 mouse_genomes_project 7 128685016 128693251 + Stx4a protein_coding retained_intron MGP_AJ_T0086978.1 MGP_AJ_G0033040.1 mouse_genomes_project 7 128687202 128693072 + Stx4a protein_coding retained_intron MGP_AJ_T0086979.1 MGP_AJ_G0033040.1 mouse_genomes_project 7 128692964 128693592 + Stx4a protein_coding retained_intron MGP_AJ_T0015710.1 MGP_AJ_G0013805.1 mouse_genomes_project 7 10692063 10692853 - processed_pseudogene processed_pseudogene MGP_AJ_T0086907.1 MGP_AJ_G0033028.1 mouse_genomes_project 7 128434544 128440762 - MGP_AJ_P0086907 Ccdc189 protein_coding protein_coding MGP_AJ_T0086908.1 MGP_AJ_G0033028.1 mouse_genomes_project 7 128435521 128438502 - MGP_AJ_P0086908 Ccdc189 protein_coding protein_coding MGP_AJ_T0086909.1 MGP_AJ_G0033028.1 mouse_genomes_project 7 128435548 128437884 - Ccdc189 protein_coding retained_intron MGP_AJ_T0086910.1 MGP_AJ_G0033028.1 mouse_genomes_project 7 128437374 128440336 - Ccdc189 protein_coding retained_intron MGP_AJ_T0086911.1 MGP_AJ_G0033028.1 mouse_genomes_project 7 128439228 128440547 - Ccdc189 protein_coding retained_intron MGP_AJ_T0085121.1 MGP_AJ_G0032503.1 mouse_genomes_project 7 97915149 97937984 + MGP_AJ_P0085121 Clns1a protein_coding protein_coding MGP_AJ_T0085122.1 MGP_AJ_G0032503.1 mouse_genomes_project 7 97915210 97931821 + Clns1a protein_coding retained_intron MGP_AJ_T0085123.1 MGP_AJ_G0032503.1 mouse_genomes_project 7 97936898 97939902 + Clns1a protein_coding retained_intron MGP_AJ_T0102823.1 MGP_AJ_G0040563.1 mouse_genomes_project 7 43152801 43156615 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0083664.1 MGP_AJ_G0032145.1 mouse_genomes_project 7 43858027 43881833 - MGP_AJ_P0083664 Mybpc2 protein_coding protein_coding MGP_AJ_T0083665.1 MGP_AJ_G0032145.1 mouse_genomes_project 7 43858160 43887131 - MGP_AJ_P0083665 Mybpc2 protein_coding unknown_likely_coding MGP_AJ_T0015845.1 MGP_AJ_G0013940.1 mouse_genomes_project 7 65010066 65011322 + processed_pseudogene processed_pseudogene MGP_AJ_T0086463.1 MGP_AJ_G0032952.1 mouse_genomes_project 7 126415917 126444088 + MGP_AJ_P0086463 Il21r protein_coding nonsense_mediated_decay MGP_AJ_T0086464.1 MGP_AJ_G0032952.1 mouse_genomes_project 7 126435463 126445573 + MGP_AJ_P0086464 Il21r protein_coding protein_coding MGP_AJ_T0087410.1 MGP_AJ_G0033134.1 mouse_genomes_project 7 140547744 140563852 - MGP_AJ_P0087410 protein_coding protein_coding MGP_AJ_T0087411.1 MGP_AJ_G0033134.1 mouse_genomes_project 7 140547744 140634444 - MGP_AJ_P0087411 protein_coding protein_coding MGP_AJ_T0087412.1 MGP_AJ_G0033134.1 mouse_genomes_project 7 140547744 140554306 - MGP_AJ_P0087412 protein_coding protein_coding MGP_AJ_T0087413.1 MGP_AJ_G0033134.1 mouse_genomes_project 7 140547873 140563832 - protein_coding retained_intron MGP_AJ_T0087414.1 MGP_AJ_G0033134.1 mouse_genomes_project 7 140559497 140563852 - protein_coding retained_intron MGP_AJ_T0087415.1 MGP_AJ_G0033134.1 mouse_genomes_project 7 140586230 140611795 - MGP_AJ_P0087415 protein_coding nonsense_mediated_decay MGP_AJ_T0087416.1 MGP_AJ_G0033134.1 mouse_genomes_project 7 140586230 140634444 - MGP_AJ_P0087416 protein_coding nonsense_mediated_decay MGP_AJ_T0087417.1 MGP_AJ_G0033134.1 mouse_genomes_project 7 140593179 140634444 - protein_coding retained_intron MGP_AJ_T0087418.1 MGP_AJ_G0033134.1 mouse_genomes_project 7 140626539 140634444 - MGP_AJ_P0087418 protein_coding protein_coding MGP_AJ_T0087419.1 MGP_AJ_G0033134.1 mouse_genomes_project 7 140628895 140634444 - protein_coding retained_intron MGP_AJ_T0009037.1 MGP_AJ_G0007271.1 mouse_genomes_project 7 127898073 127900657 + Gm44939 lincRNA lincRNA MGP_AJ_T0084662.1 MGP_AJ_G0032383.1 mouse_genomes_project 7 80268895 80274303 - MGP_AJ_P0084662 Cib1 protein_coding protein_coding MGP_AJ_T0084663.1 MGP_AJ_G0032383.1 mouse_genomes_project 7 80268903 80274367 - MGP_AJ_P0084663 Cib1 protein_coding protein_coding MGP_AJ_T0084664.1 MGP_AJ_G0032383.1 mouse_genomes_project 7 80268903 80274308 - MGP_AJ_P0084664 Cib1 protein_coding protein_coding MGP_AJ_T0084665.1 MGP_AJ_G0032383.1 mouse_genomes_project 7 80269576 80272103 - Cib1 protein_coding retained_intron MGP_AJ_T0084666.1 MGP_AJ_G0032383.1 mouse_genomes_project 7 80269900 80274340 - Cib1 protein_coding retained_intron MGP_AJ_T0084667.1 MGP_AJ_G0032383.1 mouse_genomes_project 7 80270140 80274548 - MGP_AJ_P0084667 Cib1 protein_coding nonsense_mediated_decay MGP_AJ_T0084668.1 MGP_AJ_G0032383.1 mouse_genomes_project 7 80273193 80274474 - Cib1 protein_coding retained_intron MGP_AJ_T0084669.1 MGP_AJ_G0032383.1 mouse_genomes_project 7 80273308 80274324 - Cib1 protein_coding retained_intron MGP_AJ_T0083359.1 MGP_AJ_G0032069.1 mouse_genomes_project 7 33907696 33924866 + MGP_AJ_P0083359 Slc7a9 protein_coding protein_coding MGP_AJ_T0083360.1 MGP_AJ_G0032069.1 mouse_genomes_project 7 33907940 33924866 + MGP_AJ_P0083360 Slc7a9 protein_coding protein_coding MGP_AJ_T0083361.1 MGP_AJ_G0032069.1 mouse_genomes_project 7 33908001 33908974 + Slc7a9 protein_coding retained_intron MGP_AJ_T0083362.1 MGP_AJ_G0032069.1 mouse_genomes_project 7 33908003 33924833 + Slc7a9 protein_coding retained_intron MGP_AJ_T0083363.1 MGP_AJ_G0032069.1 mouse_genomes_project 7 33908073 33924866 + MGP_AJ_P0083363 Slc7a9 protein_coding protein_coding MGP_AJ_T0083364.1 MGP_AJ_G0032069.1 mouse_genomes_project 7 33908739 33914454 + MGP_AJ_P0083364 Slc7a9 protein_coding nonsense_mediated_decay MGP_AJ_T0002233.1 MGP_AJ_G0002145.1 mouse_genomes_project 7 55232052 55234275 + TEC TEC MGP_AJ_T0018345.1 MGP_AJ_G0015642.1 mouse_genomes_project 7 43597835 43613826 + Gm28496 processed_transcript processed_transcript MGP_AJ_T0018346.1 MGP_AJ_G0015642.1 mouse_genomes_project 7 43597883 43612994 + Gm28496 processed_transcript processed_transcript MGP_AJ_T0005138.1 MGP_AJ_G0004381.1 mouse_genomes_project 7 1027708 1039249 - D030047H15Rik antisense antisense MGP_AJ_T0100190.1 MGP_AJ_G0038156.1 mouse_genomes_project 7 130868398 130868508 + Gm23847 snRNA snRNA MGP_AJ_T0085025.1 MGP_AJ_G0032484.1 mouse_genomes_project 7 91266034 92621570 + MGP_AJ_P0085025 Dlg2 protein_coding protein_coding MGP_AJ_T0085026.1 MGP_AJ_G0032484.1 mouse_genomes_project 7 91266054 92468673 + Dlg2 protein_coding processed_transcript MGP_AJ_T0085027.1 MGP_AJ_G0032484.1 mouse_genomes_project 7 91266056 92621570 + MGP_AJ_P0085027 Dlg2 protein_coding protein_coding MGP_AJ_T0085028.1 MGP_AJ_G0032484.1 mouse_genomes_project 7 91863527 92183429 + Dlg2 protein_coding retained_intron MGP_AJ_T0085029.1 MGP_AJ_G0032484.1 mouse_genomes_project 7 91902920 92621570 + MGP_AJ_P0085029 Dlg2 protein_coding protein_coding MGP_AJ_T0085030.1 MGP_AJ_G0032484.1 mouse_genomes_project 7 91903171 92127765 + Dlg2 protein_coding processed_transcript MGP_AJ_T0085031.1 MGP_AJ_G0032484.1 mouse_genomes_project 7 91903173 92623800 + MGP_AJ_P0085031 Dlg2 protein_coding unknown_likely_coding MGP_AJ_T0085032.1 MGP_AJ_G0032484.1 mouse_genomes_project 7 92249007 92621570 + MGP_AJ_P0085032 Dlg2 protein_coding protein_coding MGP_AJ_T0085033.1 MGP_AJ_G0032484.1 mouse_genomes_project 7 92369394 92470391 + Dlg2 protein_coding retained_intron MGP_AJ_T0085034.1 MGP_AJ_G0032484.1 mouse_genomes_project 7 92417899 92621050 + Dlg2 protein_coding processed_transcript MGP_AJ_T0085035.1 MGP_AJ_G0032484.1 mouse_genomes_project 7 92418103 92605713 + Dlg2 protein_coding processed_transcript MGP_AJ_T0084428.1 MGP_AJ_G0032338.1 mouse_genomes_project 7 67354644 67487017 - MGP_AJ_P0084428 Lrrc28 protein_coding protein_coding MGP_AJ_T0084429.1 MGP_AJ_G0032338.1 mouse_genomes_project 7 67354645 67482981 - MGP_AJ_P0084429 Lrrc28 protein_coding nonsense_mediated_decay MGP_AJ_T0084430.1 MGP_AJ_G0032338.1 mouse_genomes_project 7 67355636 67421348 - Lrrc28 protein_coding processed_transcript MGP_AJ_T0084431.1 MGP_AJ_G0032338.1 mouse_genomes_project 7 67371524 67483017 - MGP_AJ_P0084431 Lrrc28 protein_coding nonsense_mediated_decay MGP_AJ_T0084432.1 MGP_AJ_G0032338.1 mouse_genomes_project 7 67371649 67377634 - Lrrc28 protein_coding processed_transcript MGP_AJ_T0084433.1 MGP_AJ_G0032338.1 mouse_genomes_project 7 67373639 67461855 - Lrrc28 protein_coding processed_transcript MGP_AJ_T0084434.1 MGP_AJ_G0032338.1 mouse_genomes_project 7 67373730 67448324 - Lrrc28 protein_coding processed_transcript MGP_AJ_T0084435.1 MGP_AJ_G0032338.1 mouse_genomes_project 7 67373740 67461804 - Lrrc28 protein_coding processed_transcript MGP_AJ_T0084436.1 MGP_AJ_G0032338.1 mouse_genomes_project 7 67386992 67486990 - MGP_AJ_P0084436 Lrrc28 protein_coding protein_coding MGP_AJ_T0084437.1 MGP_AJ_G0032338.1 mouse_genomes_project 7 67435827 67486993 - MGP_AJ_P0084437 Lrrc28 protein_coding protein_coding MGP_AJ_T0084438.1 MGP_AJ_G0032338.1 mouse_genomes_project 7 67436829 67461826 - Lrrc28 protein_coding processed_transcript MGP_AJ_T0084439.1 MGP_AJ_G0032338.1 mouse_genomes_project 7 67459889 67487054 - MGP_AJ_P0084439 Lrrc28 protein_coding protein_coding MGP_AJ_T0085582.1 MGP_AJ_G0032658.1 mouse_genomes_project 7 104266901 104269623 - MGP_AJ_P0085582 Hbb-bh1 protein_coding protein_coding MGP_AJ_T0010846.1 MGP_AJ_G0008968.1 mouse_genomes_project 7 23708293 23708389 - Gm24865 miRNA miRNA MGP_AJ_T0008811.1 MGP_AJ_G0007113.1 mouse_genomes_project 7 1181195 1185191 + Gm44581 lincRNA lincRNA MGP_AJ_T0085005.1 MGP_AJ_G0032479.1 mouse_genomes_project 7 90539332 90600060 + MGP_AJ_P0085005 Sytl2 protein_coding protein_coding MGP_AJ_T0085006.1 MGP_AJ_G0032479.1 mouse_genomes_project 7 90539332 90600060 + MGP_AJ_P0085006 Sytl2 protein_coding protein_coding MGP_AJ_T0085007.1 MGP_AJ_G0032479.1 mouse_genomes_project 7 90539332 90600060 + MGP_AJ_P0085007 Sytl2 protein_coding protein_coding MGP_AJ_T0085008.1 MGP_AJ_G0032479.1 mouse_genomes_project 7 90539332 90600060 + MGP_AJ_P0085008 Sytl2 protein_coding protein_coding MGP_AJ_T0085009.1 MGP_AJ_G0032479.1 mouse_genomes_project 7 90539425 90600062 + MGP_AJ_P0085009 Sytl2 protein_coding unknown_likely_coding MGP_AJ_T0085010.1 MGP_AJ_G0032479.1 mouse_genomes_project 7 90571795 90600060 + Sytl2 protein_coding processed_transcript MGP_AJ_T0085011.1 MGP_AJ_G0032479.1 mouse_genomes_project 7 90571817 90600060 + Sytl2 protein_coding processed_transcript MGP_AJ_T0085012.1 MGP_AJ_G0032479.1 mouse_genomes_project 7 90588901 90600060 + Sytl2 protein_coding processed_transcript MGP_AJ_T0085470.1 MGP_AJ_G0032580.1 mouse_genomes_project 7 102473296 102564616 - MGP_AJ_P0085470 Nup98 protein_coding unknown_likely_coding MGP_AJ_T0085471.1 MGP_AJ_G0032580.1 mouse_genomes_project 7 102487209 102564642 - MGP_AJ_P0085471 Nup98 protein_coding protein_coding MGP_AJ_T0018369.1 MGP_AJ_G0015649.1 mouse_genomes_project 7 55934289 55935224 + Gm15888 processed_transcript processed_transcript MGP_AJ_T0002196.1 MGP_AJ_G0002108.1 mouse_genomes_project 7 15299433 15301607 - TEC TEC MGP_AJ_T0015935.1 MGP_AJ_G0014030.1 mouse_genomes_project 7 127632206 127632510 + processed_pseudogene processed_pseudogene MGP_AJ_T0009017.1 MGP_AJ_G0007261.1 mouse_genomes_project 7 125728935 125736202 + Gm45092 lincRNA lincRNA MGP_AJ_T0085683.1 MGP_AJ_G0032730.1 mouse_genomes_project 7 105782184 105785374 + MGP_AJ_P0085683 Gm5901 protein_coding protein_coding MGP_AJ_T0008883.1 MGP_AJ_G0007171.1 mouse_genomes_project 7 51681595 51703516 - Gm29296 lincRNA lincRNA MGP_AJ_T0082942.1 MGP_AJ_G0031985.1 mouse_genomes_project 7 28444802 28447089 - MGP_AJ_P0082942 Ovol3 protein_coding protein_coding MGP_AJ_T0081644.1 MGP_AJ_G0031608.1 mouse_genomes_project 7 9082486 9083404 + MGP_AJ_P0081644 Vmn1r75 protein_coding protein_coding MGP_AJ_T0085216.1 MGP_AJ_G0032526.1 mouse_genomes_project 7 99792477 99864542 + MGP_AJ_P0085216 Arrb1 protein_coding protein_coding MGP_AJ_T0085217.1 MGP_AJ_G0032526.1 mouse_genomes_project 7 99792477 99864542 + MGP_AJ_P0085217 Arrb1 protein_coding protein_coding MGP_AJ_T0085218.1 MGP_AJ_G0032526.1 mouse_genomes_project 7 99792673 99861348 + MGP_AJ_P0085218 Arrb1 protein_coding protein_coding MGP_AJ_T0085219.1 MGP_AJ_G0032526.1 mouse_genomes_project 7 99792715 99846705 + MGP_AJ_P0085219 Arrb1 protein_coding protein_coding MGP_AJ_T0085220.1 MGP_AJ_G0032526.1 mouse_genomes_project 7 99796680 99845900 + MGP_AJ_P0085220 Arrb1 protein_coding protein_coding MGP_AJ_T0085221.1 MGP_AJ_G0032526.1 mouse_genomes_project 7 99830873 99845892 + Arrb1 protein_coding processed_transcript MGP_AJ_T0085222.1 MGP_AJ_G0032526.1 mouse_genomes_project 7 99852348 99858915 + Arrb1 protein_coding retained_intron MGP_AJ_T0085223.1 MGP_AJ_G0032526.1 mouse_genomes_project 7 99852369 99858929 + Arrb1 protein_coding retained_intron MGP_AJ_T0085224.1 MGP_AJ_G0032526.1 mouse_genomes_project 7 99852376 99857569 + Arrb1 protein_coding retained_intron MGP_AJ_T0085225.1 MGP_AJ_G0032526.1 mouse_genomes_project 7 99852378 99857849 + MGP_AJ_P0085225 Arrb1 protein_coding protein_coding MGP_AJ_T0098723.1 MGP_AJ_G0036707.1 mouse_genomes_project 7 33554710 33554829 + Gm22535 rRNA rRNA MGP_AJ_T0100181.1 MGP_AJ_G0038147.1 mouse_genomes_project 7 123071409 123071516 + Gm23614 snRNA snRNA MGP_AJ_T0081609.1 MGP_AJ_G0031585.1 mouse_genomes_project 7 3514452 3515506 - MGP_AJ_P0081609 Olfr1349 protein_coding protein_coding MGP_AJ_T0084273.1 MGP_AJ_G0032307.1 mouse_genomes_project 7 62298924 62301471 - MGP_AJ_P0084273 Mkrn3 protein_coding protein_coding MGP_AJ_T0008825.1 MGP_AJ_G0007125.1 mouse_genomes_project 7 22793279 22796604 + Gm44970 lincRNA lincRNA MGP_AJ_T0008921.1 MGP_AJ_G0007202.1 mouse_genomes_project 7 73048652 73051923 + Gm44670 lincRNA lincRNA MGP_AJ_T0008922.1 MGP_AJ_G0007202.1 mouse_genomes_project 7 73048711 73052358 + Gm44670 lincRNA lincRNA MGP_AJ_T0081977.1 MGP_AJ_G0031727.1 mouse_genomes_project 7 16630966 16641256 + MGP_AJ_P0081977 Mypop protein_coding protein_coding MGP_AJ_T0081978.1 MGP_AJ_G0031727.1 mouse_genomes_project 7 16631040 16641258 + MGP_AJ_P0081978 Mypop protein_coding protein_coding MGP_AJ_T0081979.1 MGP_AJ_G0031727.1 mouse_genomes_project 7 16631690 16632822 + Mypop protein_coding retained_intron MGP_AJ_T0015833.1 MGP_AJ_G0013928.1 mouse_genomes_project 7 56162082 56162974 - processed_pseudogene processed_pseudogene MGP_AJ_T0082097.1 MGP_AJ_G0031759.1 mouse_genomes_project 7 17177939 17209078 - MGP_AJ_P0082097 Ppp1r37 protein_coding protein_coding MGP_AJ_T0015777.1 MGP_AJ_G0013872.1 mouse_genomes_project 7 30835191 30836171 + processed_pseudogene processed_pseudogene MGP_AJ_T0015906.1 MGP_AJ_G0014001.1 mouse_genomes_project 7 104675835 104677037 - processed_pseudogene processed_pseudogene MGP_AJ_T0082287.1 MGP_AJ_G0031825.1 mouse_genomes_project 7 22721256 22726697 + MGP_AJ_P0082287 Rps19 protein_coding protein_coding MGP_AJ_T0082288.1 MGP_AJ_G0031825.1 mouse_genomes_project 7 22721518 22726697 + MGP_AJ_P0082288 Rps19 protein_coding nonsense_mediated_decay MGP_AJ_T0082289.1 MGP_AJ_G0031825.1 mouse_genomes_project 7 22721520 22724645 + Rps19 protein_coding retained_intron MGP_AJ_T0082290.1 MGP_AJ_G0031825.1 mouse_genomes_project 7 22721521 22726693 + MGP_AJ_P0082290 Rps19 protein_coding protein_coding MGP_AJ_T0082291.1 MGP_AJ_G0031825.1 mouse_genomes_project 7 22721536 22725836 + MGP_AJ_P0082291 Rps19 protein_coding protein_coding MGP_AJ_T0082292.1 MGP_AJ_G0031825.1 mouse_genomes_project 7 22721599 22726697 + MGP_AJ_P0082292 Rps19 protein_coding protein_coding MGP_AJ_T0082293.1 MGP_AJ_G0031825.1 mouse_genomes_project 7 22721698 22725816 + MGP_AJ_P0082293 Rps19 protein_coding protein_coding MGP_AJ_T0082294.1 MGP_AJ_G0031825.1 mouse_genomes_project 7 22721802 22725858 + MGP_AJ_P0082294 Rps19 protein_coding protein_coding MGP_AJ_T0082295.1 MGP_AJ_G0031825.1 mouse_genomes_project 7 22725075 22726695 + Rps19 protein_coding retained_intron MGP_AJ_T0082296.1 MGP_AJ_G0031825.1 mouse_genomes_project 7 22725625 22726695 + Rps19 protein_coding processed_transcript MGP_AJ_T0005207.1 MGP_AJ_G0004429.1 mouse_genomes_project 7 43069785 43159559 - antisense antisense MGP_AJ_T0100196.1 MGP_AJ_G0038162.1 mouse_genomes_project 7 143415554 143415662 + Gm26143 snRNA snRNA MGP_AJ_T0005151.1 MGP_AJ_G0004388.1 mouse_genomes_project 7 16627277 16628043 - Gm45058 antisense antisense MGP_AJ_T0083093.1 MGP_AJ_G0032015.1 mouse_genomes_project 7 28878059 28878938 - MGP_AJ_P0083093 Pmis2 protein_coding protein_coding MGP_AJ_T0083094.1 MGP_AJ_G0032015.1 mouse_genomes_project 7 28878094 28878933 - Pmis2 protein_coding processed_transcript MGP_AJ_T0081515.1 MGP_AJ_G0031539.1 mouse_genomes_project 7 1768215 1780205 - MGP_AJ_P0081515 Shisa7 protein_coding protein_coding MGP_AJ_T0081516.1 MGP_AJ_G0031539.1 mouse_genomes_project 7 1768216 1788701 - MGP_AJ_P0081516 Shisa7 protein_coding protein_coding MGP_AJ_T0081517.1 MGP_AJ_G0031539.1 mouse_genomes_project 7 1770691 1788701 - MGP_AJ_P0081517 Shisa7 protein_coding protein_coding MGP_AJ_T0081518.1 MGP_AJ_G0031539.1 mouse_genomes_project 7 1772841 1775004 - Shisa7 protein_coding retained_intron MGP_AJ_T0081519.1 MGP_AJ_G0031539.1 mouse_genomes_project 7 1775267 1778546 - Shisa7 protein_coding retained_intron MGP_AJ_T0083314.1 MGP_AJ_G0032060.1 mouse_genomes_project 7 33358268 33490815 + MGP_AJ_P0083314 Pepd protein_coding protein_coding MGP_AJ_T0083315.1 MGP_AJ_G0032060.1 mouse_genomes_project 7 33391782 33467898 + MGP_AJ_P0083315 Pepd protein_coding nonsense_mediated_decay MGP_AJ_T0083316.1 MGP_AJ_G0032060.1 mouse_genomes_project 7 33415412 33486841 + Pepd protein_coding retained_intron MGP_AJ_T0083317.1 MGP_AJ_G0032060.1 mouse_genomes_project 7 33415639 33426916 + Pepd protein_coding retained_intron MGP_AJ_T0083318.1 MGP_AJ_G0032060.1 mouse_genomes_project 7 33486588 33490814 + Pepd protein_coding retained_intron MGP_AJ_T0083319.1 MGP_AJ_G0032060.1 mouse_genomes_project 7 33489296 33490641 + Pepd protein_coding retained_intron MGP_AJ_T0101860.1 MGP_AJ_G0039745.1 mouse_genomes_project 7 9250056 9258158 + transcribed_processed_pseudogene processed_transcript MGP_AJ_T0101861.1 MGP_AJ_G0039745.1 mouse_genomes_project 7 9258092 9259483 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0087003.1 MGP_AJ_G0033047.1 mouse_genomes_project 7 128757867 128761614 + Kat8 protein_coding retained_intron MGP_AJ_T0087004.1 MGP_AJ_G0033047.1 mouse_genomes_project 7 128757867 128771356 + MGP_AJ_P0087004 Kat8 protein_coding protein_coding MGP_AJ_T0087005.1 MGP_AJ_G0033047.1 mouse_genomes_project 7 128759678 128766032 + MGP_AJ_P0087005 Kat8 protein_coding protein_coding MGP_AJ_T0087006.1 MGP_AJ_G0033047.1 mouse_genomes_project 7 128765308 128766100 + Kat8 protein_coding retained_intron MGP_AJ_T0085581.1 MGP_AJ_G0032657.1 mouse_genomes_project 7 104264449 104265697 - MGP_AJ_P0085581 Hbb-bh2 protein_coding protein_coding MGP_AJ_T0086111.1 MGP_AJ_G0032872.1 mouse_genomes_project 7 116839781 116848970 - MGP_AJ_P0086111 Plekha7 protein_coding unknown_likely_coding MGP_AJ_T0086112.1 MGP_AJ_G0032872.1 mouse_genomes_project 7 116839783 116956328 - MGP_AJ_P0086112 Plekha7 protein_coding protein_coding MGP_AJ_T0086113.1 MGP_AJ_G0032872.1 mouse_genomes_project 7 116839791 117027409 - MGP_AJ_P0086113 Plekha7 protein_coding protein_coding MGP_AJ_T0086114.1 MGP_AJ_G0032872.1 mouse_genomes_project 7 116842327 116905904 - MGP_AJ_P0086114 Plekha7 protein_coding protein_coding MGP_AJ_T0086115.1 MGP_AJ_G0032872.1 mouse_genomes_project 7 116850084 117027366 - MGP_AJ_P0086115 Plekha7 protein_coding protein_coding MGP_AJ_T0086116.1 MGP_AJ_G0032872.1 mouse_genomes_project 7 116850093 116906181 - MGP_AJ_P0086116 Plekha7 protein_coding protein_coding MGP_AJ_T0086117.1 MGP_AJ_G0032872.1 mouse_genomes_project 7 116851231 117027388 - MGP_AJ_P0086117 Plekha7 protein_coding protein_coding MGP_AJ_T0086118.1 MGP_AJ_G0032872.1 mouse_genomes_project 7 116859033 116874183 - MGP_AJ_P0086118 Plekha7 protein_coding protein_coding MGP_AJ_T0086119.1 MGP_AJ_G0032872.1 mouse_genomes_project 7 116872359 116956182 - Plekha7 protein_coding retained_intron MGP_AJ_T0086120.1 MGP_AJ_G0032872.1 mouse_genomes_project 7 116879441 116880377 - Plekha7 protein_coding retained_intron MGP_AJ_T0086121.1 MGP_AJ_G0032872.1 mouse_genomes_project 7 116880753 116901092 - Plekha7 protein_coding processed_transcript MGP_AJ_T0086122.1 MGP_AJ_G0032872.1 mouse_genomes_project 7 116886987 116976974 - MGP_AJ_P0086122 Plekha7 protein_coding nonsense_mediated_decay MGP_AJ_T0086123.1 MGP_AJ_G0032872.1 mouse_genomes_project 7 116887110 116903577 - Plekha7 protein_coding processed_transcript MGP_AJ_T0086124.1 MGP_AJ_G0032872.1 mouse_genomes_project 7 116892307 117027274 - MGP_AJ_P0086124 Plekha7 protein_coding protein_coding MGP_AJ_T0086125.1 MGP_AJ_G0032872.1 mouse_genomes_project 7 116893481 117027083 - Plekha7 protein_coding retained_intron MGP_AJ_T0086126.1 MGP_AJ_G0032872.1 mouse_genomes_project 7 116893527 116897253 - Plekha7 protein_coding retained_intron MGP_AJ_T0086127.1 MGP_AJ_G0032872.1 mouse_genomes_project 7 116897820 116982924 - Plekha7 protein_coding processed_transcript MGP_AJ_T0084949.1 MGP_AJ_G0032459.1 mouse_genomes_project 7 86908106 86965652 - MGP_AJ_P0084949 Folh1 protein_coding protein_coding MGP_AJ_T0084950.1 MGP_AJ_G0032459.1 mouse_genomes_project 7 86908106 86965596 - MGP_AJ_P0084950 Folh1 protein_coding protein_coding MGP_AJ_T0008971.1 MGP_AJ_G0007231.1 mouse_genomes_project 7 92818607 92826221 + Gm26944 lincRNA lincRNA MGP_AJ_T0002270.1 MGP_AJ_G0002181.1 mouse_genomes_project 7 78920917 78922550 - TEC TEC MGP_AJ_T0087553.1 MGP_AJ_G0033186.1 mouse_genomes_project 7 141950990 141953595 + MGP_AJ_P0087553 Ifitm1 protein_coding protein_coding MGP_AJ_T0087554.1 MGP_AJ_G0033186.1 mouse_genomes_project 7 141951797 141953595 + MGP_AJ_P0087554 Ifitm1 protein_coding protein_coding MGP_AJ_T0087555.1 MGP_AJ_G0033186.1 mouse_genomes_project 7 141951809 141953595 + MGP_AJ_P0087555 Ifitm1 protein_coding protein_coding MGP_AJ_T0008991.1 MGP_AJ_G0007246.1 mouse_genomes_project 7 110646290 110654560 - lincRNA lincRNA MGP_AJ_T0008992.1 MGP_AJ_G0007246.1 mouse_genomes_project 7 110646318 110647148 - lincRNA lincRNA MGP_AJ_T0008993.1 MGP_AJ_G0007246.1 mouse_genomes_project 7 110646326 110800280 - lincRNA lincRNA MGP_AJ_T0008994.1 MGP_AJ_G0007246.1 mouse_genomes_project 7 110649053 110654545 - lincRNA lincRNA MGP_AJ_T0010869.1 MGP_AJ_G0008991.1 mouse_genomes_project 7 53862722 53862851 - Mir6238 miRNA miRNA MGP_AJ_T0085853.1 MGP_AJ_G0032805.1 mouse_genomes_project 7 109193698 109194656 - MGP_AJ_P0085853 Olfr504 protein_coding protein_coding MGP_AJ_T0082021.1 MGP_AJ_G0031738.1 mouse_genomes_project 7 16791636 16795456 + MGP_AJ_P0082021 Snrpd2 protein_coding protein_coding MGP_AJ_T0082022.1 MGP_AJ_G0031738.1 mouse_genomes_project 7 16791773 16793007 + Snrpd2 protein_coding retained_intron MGP_AJ_T0102857.1 MGP_AJ_G0040597.1 mouse_genomes_project 7 48509040 48509824 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0011697.1 MGP_AJ_G0009819.1 mouse_genomes_project 7 131374201 131374277 - Gm27884 misc_RNA misc_RNA MGP_AJ_T0081618.1 MGP_AJ_G0031589.1 mouse_genomes_project 7 3722740 3958278 + MGP_AJ_P0081618 Usp29 protein_coding protein_coding MGP_AJ_T0081619.1 MGP_AJ_G0031589.1 mouse_genomes_project 7 3722898 3952821 + MGP_AJ_P0081619 Usp29 protein_coding protein_coding MGP_AJ_T0081620.1 MGP_AJ_G0031589.1 mouse_genomes_project 7 3940384 3955874 + MGP_AJ_P0081620 Usp29 protein_coding protein_coding MGP_AJ_T0081621.1 MGP_AJ_G0031589.1 mouse_genomes_project 7 3952226 3954836 + MGP_AJ_P0081621 Usp29 protein_coding protein_coding MGP_AJ_T0098468.1 MGP_AJ_G0036452.1 mouse_genomes_project 7 93268679 93270511 + pseudogene pseudogene MGP_AJ_T0082595.1 MGP_AJ_G0031896.1 mouse_genomes_project 7 25582052 25610794 + MGP_AJ_P0082595 2310022A10Rik protein_coding protein_coding MGP_AJ_T0082596.1 MGP_AJ_G0031896.1 mouse_genomes_project 7 25582086 25603410 + MGP_AJ_P0082596 2310022A10Rik protein_coding protein_coding MGP_AJ_T0082597.1 MGP_AJ_G0031896.1 mouse_genomes_project 7 25582089 25582891 + 2310022A10Rik protein_coding processed_transcript MGP_AJ_T0082598.1 MGP_AJ_G0031896.1 mouse_genomes_project 7 25582105 25610794 + MGP_AJ_P0082598 2310022A10Rik protein_coding protein_coding MGP_AJ_T0082599.1 MGP_AJ_G0031896.1 mouse_genomes_project 7 25587969 25610789 + MGP_AJ_P0082599 2310022A10Rik protein_coding protein_coding MGP_AJ_T0082600.1 MGP_AJ_G0031896.1 mouse_genomes_project 7 25587990 25602018 + 2310022A10Rik protein_coding retained_intron MGP_AJ_T0082601.1 MGP_AJ_G0031896.1 mouse_genomes_project 7 25592906 25609329 + MGP_AJ_P0082601 2310022A10Rik protein_coding protein_coding MGP_AJ_T0082602.1 MGP_AJ_G0031896.1 mouse_genomes_project 7 25603158 25609115 + 2310022A10Rik protein_coding processed_transcript MGP_AJ_T0015904.1 MGP_AJ_G0013999.1 mouse_genomes_project 7 104254565 104254827 + processed_pseudogene processed_pseudogene MGP_AJ_T0082329.1 MGP_AJ_G0031831.1 mouse_genomes_project 7 22848655 22911591 - MGP_AJ_P0082329 Grik5 protein_coding nonsense_mediated_decay MGP_AJ_T0082330.1 MGP_AJ_G0031831.1 mouse_genomes_project 7 22848655 22911836 - MGP_AJ_P0082330 Grik5 protein_coding nonsense_mediated_decay MGP_AJ_T0082331.1 MGP_AJ_G0031831.1 mouse_genomes_project 7 22848655 22911782 - MGP_AJ_P0082331 Grik5 protein_coding protein_coding MGP_AJ_T0082332.1 MGP_AJ_G0031831.1 mouse_genomes_project 7 22885010 22898132 - Grik5 protein_coding retained_intron MGP_AJ_T0082333.1 MGP_AJ_G0031831.1 mouse_genomes_project 7 22898812 22903894 - Grik5 protein_coding retained_intron MGP_AJ_T0082334.1 MGP_AJ_G0031831.1 mouse_genomes_project 7 22898997 22899695 - Grik5 protein_coding retained_intron MGP_AJ_T0082335.1 MGP_AJ_G0031831.1 mouse_genomes_project 7 22907260 22911800 - Grik5 protein_coding processed_transcript MGP_AJ_T0008999.1 MGP_AJ_G0007250.1 mouse_genomes_project 7 115653183 115659559 - Gm45020 lincRNA lincRNA MGP_AJ_T0082239.1 MGP_AJ_G0031808.1 mouse_genomes_project 7 22264767 22278043 + MGP_AJ_P0082239 Plaur protein_coding protein_coding MGP_AJ_T0082240.1 MGP_AJ_G0031808.1 mouse_genomes_project 7 22264768 22267687 + Plaur protein_coding retained_intron MGP_AJ_T0082241.1 MGP_AJ_G0031808.1 mouse_genomes_project 7 22264778 22275045 + Plaur protein_coding retained_intron MGP_AJ_T0082242.1 MGP_AJ_G0031808.1 mouse_genomes_project 7 22264783 22278044 + Plaur protein_coding retained_intron MGP_AJ_T0082243.1 MGP_AJ_G0031808.1 mouse_genomes_project 7 22264783 22274078 + MGP_AJ_P0082243 Plaur protein_coding nonsense_mediated_decay MGP_AJ_T0082244.1 MGP_AJ_G0031808.1 mouse_genomes_project 7 22264783 22277791 + MGP_AJ_P0082244 Plaur protein_coding nonsense_mediated_decay MGP_AJ_T0086187.1 MGP_AJ_G0032886.1 mouse_genomes_project 7 119457065 119481271 + MGP_AJ_P0086187 Ccp110 protein_coding protein_coding MGP_AJ_T0086188.1 MGP_AJ_G0032886.1 mouse_genomes_project 7 119459935 119481268 + MGP_AJ_P0086188 Ccp110 protein_coding protein_coding MGP_AJ_T0086189.1 MGP_AJ_G0032886.1 mouse_genomes_project 7 119465858 119481263 + Ccp110 protein_coding retained_intron MGP_AJ_T0086190.1 MGP_AJ_G0032886.1 mouse_genomes_project 7 119470205 119481271 + Ccp110 protein_coding retained_intron MGP_AJ_T0086191.1 MGP_AJ_G0032886.1 mouse_genomes_project 7 119474500 119476709 + Ccp110 protein_coding retained_intron MGP_AJ_T0085657.1 MGP_AJ_G0032705.1 mouse_genomes_project 7 105216381 105220143 + MGP_AJ_P0085657 protein_coding protein_coding MGP_AJ_T0085812.1 MGP_AJ_G0032771.1 mouse_genomes_project 7 107717909 107719039 - MGP_AJ_P0085812 protein_coding protein_coding MGP_AJ_T0002288.1 MGP_AJ_G0002199.1 mouse_genomes_project 7 117121304 117125523 - TEC TEC MGP_AJ_T0087527.1 MGP_AJ_G0033180.1 mouse_genomes_project 7 141866054 141882543 + MGP_AJ_P0087527 Psmd13 protein_coding protein_coding MGP_AJ_T0087528.1 MGP_AJ_G0033180.1 mouse_genomes_project 7 141866500 141881813 + Psmd13 protein_coding retained_intron MGP_AJ_T0087529.1 MGP_AJ_G0033180.1 mouse_genomes_project 7 141866515 141871352 + Psmd13 protein_coding processed_transcript MGP_AJ_T0087530.1 MGP_AJ_G0033180.1 mouse_genomes_project 7 141866524 141870950 + Psmd13 protein_coding processed_transcript MGP_AJ_T0087531.1 MGP_AJ_G0033180.1 mouse_genomes_project 7 141866538 141873806 + Psmd13 protein_coding processed_transcript MGP_AJ_T0087532.1 MGP_AJ_G0033180.1 mouse_genomes_project 7 141866553 141871265 + Psmd13 protein_coding retained_intron MGP_AJ_T0087533.1 MGP_AJ_G0033180.1 mouse_genomes_project 7 141866558 141882189 + MGP_AJ_P0087533 Psmd13 protein_coding nonsense_mediated_decay MGP_AJ_T0087534.1 MGP_AJ_G0033180.1 mouse_genomes_project 7 141866558 141882134 + MGP_AJ_P0087534 Psmd13 protein_coding protein_coding MGP_AJ_T0087535.1 MGP_AJ_G0033180.1 mouse_genomes_project 7 141866558 141882189 + MGP_AJ_P0087535 Psmd13 protein_coding protein_coding MGP_AJ_T0087536.1 MGP_AJ_G0033180.1 mouse_genomes_project 7 141867586 141870518 + Psmd13 protein_coding processed_transcript MGP_AJ_T0087537.1 MGP_AJ_G0033180.1 mouse_genomes_project 7 141873486 141882296 + MGP_AJ_P0087537 Psmd13 protein_coding protein_coding MGP_AJ_T0087538.1 MGP_AJ_G0033180.1 mouse_genomes_project 7 141874475 141881741 + Psmd13 protein_coding retained_intron MGP_AJ_T0087539.1 MGP_AJ_G0033180.1 mouse_genomes_project 7 141878563 141882544 + MGP_AJ_P0087539 Psmd13 protein_coding protein_coding MGP_AJ_T0082220.1 MGP_AJ_G0031803.1 mouse_genomes_project 7 22126150 22127005 - MGP_AJ_P0082220 Tescl protein_coding protein_coding MGP_AJ_T0085519.1 MGP_AJ_G0032601.1 mouse_genomes_project 7 103074267 103076097 - MGP_AJ_P0085519 Olfr33 protein_coding protein_coding MGP_AJ_T0081716.1 MGP_AJ_G0031637.1 mouse_genomes_project 7 10283564 10285957 - Ube2m protein_coding processed_transcript MGP_AJ_T0081717.1 MGP_AJ_G0031637.1 mouse_genomes_project 7 10283634 10285937 - MGP_AJ_P0081717 Ube2m protein_coding protein_coding MGP_AJ_T0081718.1 MGP_AJ_G0031637.1 mouse_genomes_project 7 10283897 10284958 - MGP_AJ_P0081718 Ube2m protein_coding protein_coding MGP_AJ_T0081719.1 MGP_AJ_G0031637.1 mouse_genomes_project 7 10283923 10286039 - MGP_AJ_P0081719 Ube2m protein_coding protein_coding MGP_AJ_T0081720.1 MGP_AJ_G0031637.1 mouse_genomes_project 7 10284285 10286056 - Ube2m protein_coding retained_intron MGP_AJ_T0081721.1 MGP_AJ_G0031637.1 mouse_genomes_project 7 10284751 10286581 - MGP_AJ_P0081721 Ube2m protein_coding protein_coding MGP_AJ_T0081722.1 MGP_AJ_G0031637.1 mouse_genomes_project 7 10284875 10285831 - Ube2m protein_coding processed_transcript MGP_AJ_T0102748.1 MGP_AJ_G0040489.1 mouse_genomes_project 7 7644373 7645264 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0081766.1 MGP_AJ_G0031653.1 mouse_genomes_project 7 11165605 11244664 - MGP_AJ_P0081766 Sult2a2 protein_coding protein_coding MGP_AJ_T0084908.1 MGP_AJ_G0032431.1 mouse_genomes_project 7 83973199 83977697 - MGP_AJ_P0084908 Mesdc1 protein_coding protein_coding MGP_AJ_T0085679.1 MGP_AJ_G0032727.1 mouse_genomes_project 7 105754732 105755701 - MGP_AJ_P0085679 Olfr691 protein_coding protein_coding MGP_AJ_T0085829.1 MGP_AJ_G0032781.1 mouse_genomes_project 7 108367242 108386787 - MGP_AJ_P0085829 Ovch2 protein_coding protein_coding MGP_AJ_T0102762.1 MGP_AJ_G0040503.1 mouse_genomes_project 7 9313160 9314599 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0085577.1 MGP_AJ_G0032655.1 mouse_genomes_project 7 104234538 104235986 - MGP_AJ_P0085577 protein_coding protein_coding MGP_AJ_T0005263.1 MGP_AJ_G0004468.1 mouse_genomes_project 7 104671875 104672794 - antisense antisense MGP_AJ_T0009053.1 MGP_AJ_G0007285.1 mouse_genomes_project 7 132051333 132055477 + 1700029B22Rik lincRNA lincRNA MGP_AJ_T0009054.1 MGP_AJ_G0007285.1 mouse_genomes_project 7 132051338 132055477 + 1700029B22Rik lincRNA lincRNA MGP_AJ_T0009055.1 MGP_AJ_G0007285.1 mouse_genomes_project 7 132051376 132055455 + 1700029B22Rik lincRNA lincRNA MGP_AJ_T0082834.1 MGP_AJ_G0031958.1 mouse_genomes_project 7 27426897 27452796 - MGP_AJ_P0082834 Spint2 protein_coding protein_coding MGP_AJ_T0082835.1 MGP_AJ_G0031958.1 mouse_genomes_project 7 27426897 27452796 - MGP_AJ_P0082835 Spint2 protein_coding protein_coding MGP_AJ_T0082717.1 MGP_AJ_G0031931.1 mouse_genomes_project 7 26745350 26769544 - MGP_AJ_P0082717 Acp7 protein_coding protein_coding MGP_AJ_T0082718.1 MGP_AJ_G0031931.1 mouse_genomes_project 7 26754500 26768984 - Acp7 protein_coding processed_transcript MGP_AJ_T0082719.1 MGP_AJ_G0031931.1 mouse_genomes_project 7 26754989 26768984 - Acp7 protein_coding processed_transcript MGP_AJ_T0082720.1 MGP_AJ_G0031931.1 mouse_genomes_project 7 26767967 26768977 - Acp7 protein_coding processed_transcript MGP_AJ_T0082721.1 MGP_AJ_G0031931.1 mouse_genomes_project 7 26768000 26769807 - Acp7 protein_coding processed_transcript MGP_AJ_T0015703.1 MGP_AJ_G0013798.1 mouse_genomes_project 7 9313219 9314606 + processed_pseudogene processed_pseudogene MGP_AJ_T0081565.1 MGP_AJ_G0031566.1 mouse_genomes_project 7 2937855 2941041 - MGP_AJ_P0081565 Vmn1r65 protein_coding protein_coding MGP_AJ_T0101402.1 MGP_AJ_G0039368.1 mouse_genomes_project 7 43599199 43599290 + Gm26247 snoRNA snoRNA MGP_AJ_T0102071.1 MGP_AJ_G0039851.1 mouse_genomes_project 7 32017358 32046502 - transcribed_unprocessed_pseudogene processed_transcript MGP_AJ_T0102072.1 MGP_AJ_G0039851.1 mouse_genomes_project 7 32017524 32018898 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_AJ_T0102757.1 MGP_AJ_G0040498.1 mouse_genomes_project 7 9187929 9188769 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0015767.1 MGP_AJ_G0013862.1 mouse_genomes_project 7 30835186 30836177 + processed_pseudogene processed_pseudogene MGP_AJ_T0002278.1 MGP_AJ_G0002189.1 mouse_genomes_project 7 79852214 79854370 - TEC TEC MGP_AJ_T0085468.1 MGP_AJ_G0032578.1 mouse_genomes_project 7 102452632 102462032 + MGP_AJ_P0085468 Art1 protein_coding protein_coding MGP_AJ_T0084962.1 MGP_AJ_G0032464.1 mouse_genomes_project 7 87613904 87685983 - MGP_AJ_P0084962 Tyr protein_coding protein_coding MGP_AJ_T0082788.1 MGP_AJ_G0031946.1 mouse_genomes_project 7 27129262 27139666 - MGP_AJ_P0082788 Eif3k protein_coding protein_coding MGP_AJ_T0086015.1 MGP_AJ_G0032853.1 mouse_genomes_project 7 113113858 113272868 + MGP_AJ_P0086015 Parva protein_coding protein_coding MGP_AJ_T0086016.1 MGP_AJ_G0032853.1 mouse_genomes_project 7 113114067 113274928 + MGP_AJ_P0086016 Parva protein_coding protein_coding MGP_AJ_T0086017.1 MGP_AJ_G0032853.1 mouse_genomes_project 7 113114266 113235949 + MGP_AJ_P0086017 Parva protein_coding nonsense_mediated_decay MGP_AJ_T0086018.1 MGP_AJ_G0032853.1 mouse_genomes_project 7 113184692 113228484 + Parva protein_coding processed_transcript MGP_AJ_T0086019.1 MGP_AJ_G0032853.1 mouse_genomes_project 7 113203236 113272209 + MGP_AJ_P0086019 Parva protein_coding protein_coding MGP_AJ_T0086020.1 MGP_AJ_G0032853.1 mouse_genomes_project 7 113252157 113262639 + Parva protein_coding processed_transcript MGP_AJ_T0102894.1 MGP_AJ_G0040634.1 mouse_genomes_project 7 103616128 103617055 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0005266.1 MGP_AJ_G0004470.1 mouse_genomes_project 7 111304459 111317522 - Gm28863 antisense antisense MGP_AJ_T0082995.1 MGP_AJ_G0031997.1 mouse_genomes_project 7 28638795 28649447 - MGP_AJ_P0082995 Aplp1 protein_coding protein_coding MGP_AJ_T0085243.1 MGP_AJ_G0032536.1 mouse_genomes_project 7 100361854 100402039 - MGP_AJ_P0085243 Pold3 protein_coding protein_coding MGP_AJ_T0085244.1 MGP_AJ_G0032536.1 mouse_genomes_project 7 100363139 100401929 - MGP_AJ_P0085244 Pold3 protein_coding nonsense_mediated_decay MGP_AJ_T0085245.1 MGP_AJ_G0032536.1 mouse_genomes_project 7 100363329 100373250 - Pold3 protein_coding retained_intron MGP_AJ_T0085246.1 MGP_AJ_G0032536.1 mouse_genomes_project 7 100363408 100369625 - Pold3 protein_coding retained_intron MGP_AJ_T0085247.1 MGP_AJ_G0032536.1 mouse_genomes_project 7 100375894 100380203 - Pold3 protein_coding retained_intron MGP_AJ_T0085248.1 MGP_AJ_G0032536.1 mouse_genomes_project 7 100378573 100380076 - Pold3 protein_coding retained_intron MGP_AJ_T0085249.1 MGP_AJ_G0032536.1 mouse_genomes_project 7 100379104 100401932 - Pold3 protein_coding processed_transcript MGP_AJ_T0085250.1 MGP_AJ_G0032536.1 mouse_genomes_project 7 100392734 100400380 - Pold3 protein_coding processed_transcript MGP_AJ_T0081756.1 MGP_AJ_G0031647.1 mouse_genomes_project 7 10657968 10668686 + MGP_AJ_P0081756 Cabp5 protein_coding protein_coding MGP_AJ_T0081757.1 MGP_AJ_G0031647.1 mouse_genomes_project 7 10658131 10666109 + MGP_AJ_P0081757 Cabp5 protein_coding protein_coding MGP_AJ_T0081758.1 MGP_AJ_G0031647.1 mouse_genomes_project 7 10658144 10665360 + MGP_AJ_P0081758 Cabp5 protein_coding nonsense_mediated_decay MGP_AJ_T0085551.1 MGP_AJ_G0032630.1 mouse_genomes_project 7 103747678 103748623 - MGP_AJ_P0085551 Olfr600 protein_coding protein_coding MGP_AJ_T0002261.1 MGP_AJ_G0002172.1 mouse_genomes_project 7 75457358 75460467 + TEC TEC MGP_AJ_T0087882.1 MGP_AJ_G0033250.1 mouse_genomes_project 7 143986347 144001660 + MGP_AJ_P0087882 Tspan32 protein_coding protein_coding MGP_AJ_T0087883.1 MGP_AJ_G0033250.1 mouse_genomes_project 7 143986361 143988790 + Tspan32 protein_coding retained_intron MGP_AJ_T0087884.1 MGP_AJ_G0033250.1 mouse_genomes_project 7 143986939 144001818 + MGP_AJ_P0087884 Tspan32 protein_coding protein_coding MGP_AJ_T0087885.1 MGP_AJ_G0033250.1 mouse_genomes_project 7 143986964 144001657 + MGP_AJ_P0087885 Tspan32 protein_coding nonsense_mediated_decay MGP_AJ_T0087886.1 MGP_AJ_G0033250.1 mouse_genomes_project 7 143986972 144001660 + MGP_AJ_P0087886 Tspan32 protein_coding protein_coding MGP_AJ_T0087887.1 MGP_AJ_G0033250.1 mouse_genomes_project 7 143986986 144001660 + MGP_AJ_P0087887 Tspan32 protein_coding protein_coding MGP_AJ_T0087888.1 MGP_AJ_G0033250.1 mouse_genomes_project 7 143987000 144001660 + MGP_AJ_P0087888 Tspan32 protein_coding protein_coding MGP_AJ_T0087889.1 MGP_AJ_G0033250.1 mouse_genomes_project 7 143987000 144001660 + MGP_AJ_P0087889 Tspan32 protein_coding protein_coding MGP_AJ_T0087890.1 MGP_AJ_G0033250.1 mouse_genomes_project 7 143987229 143999847 + MGP_AJ_P0087890 Tspan32 protein_coding protein_coding MGP_AJ_T0087891.1 MGP_AJ_G0033250.1 mouse_genomes_project 7 143999582 144001077 + Tspan32 protein_coding retained_intron MGP_AJ_T0085735.1 MGP_AJ_G0032739.1 mouse_genomes_project 7 106049945 106053527 + MGP_AJ_P0085735 protein_coding protein_coding MGP_AJ_T0085736.1 MGP_AJ_G0032739.1 mouse_genomes_project 7 106050337 106051733 + MGP_AJ_P0085736 protein_coding protein_coding MGP_AJ_T0085737.1 MGP_AJ_G0032739.1 mouse_genomes_project 7 106050441 106061486 + MGP_AJ_P0085737 protein_coding protein_coding MGP_AJ_T0085739.1 MGP_AJ_G0032739.1 mouse_genomes_project 7 106050453 106051675 + protein_coding retained_intron MGP_AJ_T0085740.1 MGP_AJ_G0032739.1 mouse_genomes_project 7 106050453 106062036 + MGP_AJ_P0085740 protein_coding nonsense_mediated_decay MGP_AJ_T0085741.1 MGP_AJ_G0032739.1 mouse_genomes_project 7 106050456 106051729 + MGP_AJ_P0085741 protein_coding nonsense_mediated_decay MGP_AJ_T0085742.1 MGP_AJ_G0032739.1 mouse_genomes_project 7 106050459 106066105 + MGP_AJ_P0085742 protein_coding protein_coding MGP_AJ_T0085743.1 MGP_AJ_G0032739.1 mouse_genomes_project 7 106050460 106053522 + MGP_AJ_P0085743 protein_coding protein_coding MGP_AJ_T0085745.1 MGP_AJ_G0032739.1 mouse_genomes_project 7 106050478 106051639 + protein_coding processed_transcript MGP_AJ_T0085746.1 MGP_AJ_G0032739.1 mouse_genomes_project 7 106050479 106051715 + MGP_AJ_P0085746 protein_coding protein_coding MGP_AJ_T0085747.1 MGP_AJ_G0032739.1 mouse_genomes_project 7 106050560 106051174 + protein_coding retained_intron MGP_AJ_T0005304.1 MGP_AJ_G0004498.1 mouse_genomes_project 7 133576596 133579103 - Gm15582 antisense antisense MGP_AJ_T0008843.1 MGP_AJ_G0007141.1 mouse_genomes_project 7 33503369 33512818 - Gm45096 lincRNA lincRNA MGP_AJ_T0102785.1 MGP_AJ_G0040526.1 mouse_genomes_project 7 12213434 12213700 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0018412.1 MGP_AJ_G0015666.1 mouse_genomes_project 7 124778032 124787815 - Gm26974 processed_transcript lincRNA MGP_AJ_T0018413.1 MGP_AJ_G0015666.1 mouse_genomes_project 7 124785454 124787438 - Gm26974 processed_transcript lincRNA MGP_AJ_T0018414.1 MGP_AJ_G0015666.1 mouse_genomes_project 7 124785456 124786942 - Gm26974 processed_transcript retained_intron MGP_AJ_T0085523.1 MGP_AJ_G0032604.1 mouse_genomes_project 7 103135921 103136992 + MGP_AJ_P0085523 Olfr561 protein_coding protein_coding MGP_AJ_T0083028.1 MGP_AJ_G0032005.1 mouse_genomes_project 7 28766737 28768708 - MGP_AJ_P0083028 Psenen protein_coding protein_coding MGP_AJ_T0084934.1 MGP_AJ_G0032445.1 mouse_genomes_project 7 86484468 86491794 - MGP_AJ_P0084934 Olfr309 protein_coding protein_coding MGP_AJ_T0084935.1 MGP_AJ_G0032445.1 mouse_genomes_project 7 86484468 86485395 - MGP_AJ_P0084935 Olfr309 protein_coding protein_coding MGP_AJ_T0102858.1 MGP_AJ_G0040598.1 mouse_genomes_project 7 48609937 48610931 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0087037.1 MGP_AJ_G0033052.1 mouse_genomes_project 7 128849872 128857234 + MGP_AJ_P0087037 Trim72 protein_coding protein_coding MGP_AJ_T0087038.1 MGP_AJ_G0033052.1 mouse_genomes_project 7 128850302 128856876 + MGP_AJ_P0087038 Trim72 protein_coding protein_coding MGP_AJ_T0015714.1 MGP_AJ_G0013809.1 mouse_genomes_project 7 11059887 11061485 - processed_pseudogene processed_pseudogene MGP_AJ_T0083560.1 MGP_AJ_G0032125.1 mouse_genomes_project 7 42904555 42909215 + MGP_AJ_P0083560 Klk11 protein_coding protein_coding MGP_AJ_T0083561.1 MGP_AJ_G0032125.1 mouse_genomes_project 7 42906280 42908905 + Klk11 protein_coding retained_intron MGP_AJ_T0083562.1 MGP_AJ_G0032125.1 mouse_genomes_project 7 42906280 42909210 + MGP_AJ_P0083562 Klk11 protein_coding protein_coding MGP_AJ_T0083563.1 MGP_AJ_G0032125.1 mouse_genomes_project 7 42906431 42909012 + Klk11 protein_coding processed_transcript MGP_AJ_T0083564.1 MGP_AJ_G0032125.1 mouse_genomes_project 7 42906431 42909012 + Klk11 protein_coding processed_transcript MGP_AJ_T0085587.1 MGP_AJ_G0032663.1 mouse_genomes_project 7 104355645 104356605 + MGP_AJ_P0085587 Olfr631 protein_coding protein_coding MGP_AJ_T0015726.1 MGP_AJ_G0013821.1 mouse_genomes_project 7 14120374 14120781 - processed_pseudogene processed_pseudogene MGP_AJ_T0082252.1 MGP_AJ_G0031812.1 mouse_genomes_project 7 22344850 22349268 - MGP_AJ_P0082252 Pinlyp protein_coding protein_coding MGP_AJ_T0087119.1 MGP_AJ_G0033068.1 mouse_genomes_project 7 129561385 129606876 - MGP_AJ_P0087119 Mcmbp protein_coding protein_coding MGP_AJ_T0087120.1 MGP_AJ_G0033068.1 mouse_genomes_project 7 129562711 129606867 - MGP_AJ_P0087120 Mcmbp protein_coding protein_coding MGP_AJ_T0087121.1 MGP_AJ_G0033068.1 mouse_genomes_project 7 129563131 129564164 - Mcmbp protein_coding processed_transcript MGP_AJ_T0087122.1 MGP_AJ_G0033068.1 mouse_genomes_project 7 129564267 129567776 - Mcmbp protein_coding retained_intron MGP_AJ_T0087123.1 MGP_AJ_G0033068.1 mouse_genomes_project 7 129577459 129579702 - Mcmbp protein_coding retained_intron MGP_AJ_T0081976.1 MGP_AJ_G0031726.1 mouse_genomes_project 7 16627118 16628681 + MGP_AJ_P0081976 Nanos2 protein_coding protein_coding MGP_AJ_T0102883.1 MGP_AJ_G0040623.1 mouse_genomes_project 7 86353708 86354648 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0084251.1 MGP_AJ_G0032301.1 mouse_genomes_project 7 59174657 59219083 + MGP_AJ_P0084251 Ube3a protein_coding protein_coding MGP_AJ_T0084252.1 MGP_AJ_G0032301.1 mouse_genomes_project 7 59174657 59193093 + MGP_AJ_P0084252 Ube3a protein_coding protein_coding MGP_AJ_T0084253.1 MGP_AJ_G0032301.1 mouse_genomes_project 7 59174677 59234413 + Ube3a protein_coding retained_intron MGP_AJ_T0084254.1 MGP_AJ_G0032301.1 mouse_genomes_project 7 59175032 59223078 + Ube3a protein_coding processed_transcript MGP_AJ_T0084255.1 MGP_AJ_G0032301.1 mouse_genomes_project 7 59175080 59193436 + Ube3a protein_coding processed_transcript MGP_AJ_T0084256.1 MGP_AJ_G0032301.1 mouse_genomes_project 7 59175138 59223341 + MGP_AJ_P0084256 Ube3a protein_coding protein_coding MGP_AJ_T0084257.1 MGP_AJ_G0032301.1 mouse_genomes_project 7 59186674 59249732 + MGP_AJ_P0084257 Ube3a protein_coding protein_coding MGP_AJ_T0084258.1 MGP_AJ_G0032301.1 mouse_genomes_project 7 59188802 59218993 + MGP_AJ_P0084258 Ube3a protein_coding protein_coding MGP_AJ_T0084259.1 MGP_AJ_G0032301.1 mouse_genomes_project 7 59223924 59228143 + Ube3a protein_coding retained_intron MGP_AJ_T0084260.1 MGP_AJ_G0032301.1 mouse_genomes_project 7 59229365 59232713 + Ube3a protein_coding retained_intron MGP_AJ_T0084261.1 MGP_AJ_G0032301.1 mouse_genomes_project 7 59233128 59249734 + MGP_AJ_P0084261 Ube3a protein_coding protein_coding MGP_AJ_T0084262.1 MGP_AJ_G0032301.1 mouse_genomes_project 7 59233892 59249744 + MGP_AJ_P0084262 Ube3a protein_coding protein_coding MGP_AJ_T0084263.1 MGP_AJ_G0032301.1 mouse_genomes_project 7 59248312 59249746 + Ube3a protein_coding retained_intron MGP_AJ_T0085694.1 MGP_AJ_G0032734.1 mouse_genomes_project 7 105962462 105966491 + MGP_AJ_P0085694 Smpd1 protein_coding protein_coding MGP_AJ_T0083809.1 MGP_AJ_G0032188.1 mouse_genomes_project 7 44582402 44586762 - MGP_AJ_P0083809 Dkkl1 protein_coding protein_coding MGP_AJ_T0002221.1 MGP_AJ_G0002133.1 mouse_genomes_project 7 42821206 42821659 + TEC TEC MGP_AJ_T0083604.1 MGP_AJ_G0032137.1 mouse_genomes_project 7 43662095 43712654 + MGP_AJ_P0083604 Shank1 protein_coding protein_coding MGP_AJ_T0083605.1 MGP_AJ_G0032137.1 mouse_genomes_project 7 43664515 43709723 + MGP_AJ_P0083605 Shank1 protein_coding protein_coding MGP_AJ_T0083606.1 MGP_AJ_G0032137.1 mouse_genomes_project 7 43664534 43709573 + MGP_AJ_P0083606 Shank1 protein_coding protein_coding MGP_AJ_T0083607.1 MGP_AJ_G0032137.1 mouse_genomes_project 7 43688297 43696018 + Shank1 protein_coding processed_transcript MGP_AJ_T0083608.1 MGP_AJ_G0032137.1 mouse_genomes_project 7 43688363 43712176 + MGP_AJ_P0083608 Shank1 protein_coding unknown_likely_coding MGP_AJ_T0083609.1 MGP_AJ_G0032137.1 mouse_genomes_project 7 43694414 43703594 + Shank1 protein_coding retained_intron MGP_AJ_T0083610.1 MGP_AJ_G0032137.1 mouse_genomes_project 7 43702997 43704293 + Shank1 protein_coding retained_intron MGP_AJ_T0010845.1 MGP_AJ_G0008967.1 mouse_genomes_project 7 23063783 23063841 - Mir7048 miRNA miRNA MGP_AJ_T0081787.1 MGP_AJ_G0031664.1 mouse_genomes_project 7 13335454 13355944 + MGP_AJ_P0081787 protein_coding protein_coding MGP_AJ_T0005289.1 MGP_AJ_G0004486.1 mouse_genomes_project 7 127859090 127862914 + Gm31749 antisense antisense MGP_AJ_T0087552.1 MGP_AJ_G0033185.1 mouse_genomes_project 7 141938734 141939857 - MGP_AJ_P0087552 Ifitm2 protein_coding protein_coding MGP_AJ_T0081447.1 MGP_AJ_G0031524.1 mouse_genomes_project 7 1459660 1466452 - MGP_AJ_P0081447 Syt5 protein_coding protein_coding MGP_AJ_T0081448.1 MGP_AJ_G0031524.1 mouse_genomes_project 7 1465572 1467426 - MGP_AJ_P0081448 Syt5 protein_coding protein_coding MGP_AJ_T0081449.1 MGP_AJ_G0031524.1 mouse_genomes_project 7 1466177 1466858 - MGP_AJ_P0081449 Syt5 protein_coding protein_coding MGP_AJ_T0101452.1 MGP_AJ_G0039418.1 mouse_genomes_project 7 124969279 124969408 + Gm25759 snoRNA snoRNA MGP_AJ_T0005161.1 MGP_AJ_G0004395.1 mouse_genomes_project 7 21794069 21812547 - antisense antisense MGP_AJ_T0085650.1 MGP_AJ_G0032698.1 mouse_genomes_project 7 104926057 104927048 + MGP_AJ_P0085650 Olfr656 protein_coding protein_coding MGP_AJ_T0081305.1 MGP_AJ_G0031502.1 mouse_genomes_project 7 531399 543767 - MGP_AJ_P0081305 Tmc4 protein_coding protein_coding MGP_AJ_T0081306.1 MGP_AJ_G0031502.1 mouse_genomes_project 7 531407 532500 - MGP_AJ_P0081306 Tmc4 protein_coding protein_coding MGP_AJ_T0081307.1 MGP_AJ_G0031502.1 mouse_genomes_project 7 531574 536933 - Tmc4 protein_coding retained_intron MGP_AJ_T0081308.1 MGP_AJ_G0031502.1 mouse_genomes_project 7 537027 542916 - Tmc4 protein_coding retained_intron MGP_AJ_T0081309.1 MGP_AJ_G0031502.1 mouse_genomes_project 7 537141 543813 - Tmc4 protein_coding retained_intron MGP_AJ_T0081310.1 MGP_AJ_G0031502.1 mouse_genomes_project 7 541457 543773 - Tmc4 protein_coding retained_intron MGP_AJ_T0015944.1 MGP_AJ_G0014039.1 mouse_genomes_project 7 129553479 129553763 + processed_pseudogene processed_pseudogene MGP_AJ_T0005314.1 MGP_AJ_G0004505.1 mouse_genomes_project 7 144194987 144279146 - Kcnq1ot1 antisense antisense MGP_AJ_T0085531.1 MGP_AJ_G0032612.1 mouse_genomes_project 7 103303889 103304846 - MGP_AJ_P0085531 Olfr575 protein_coding protein_coding MGP_AJ_T0015770.1 MGP_AJ_G0013865.1 mouse_genomes_project 7 30835186 30836171 + processed_pseudogene processed_pseudogene MGP_AJ_T0081289.1 MGP_AJ_G0031499.1 mouse_genomes_project 7 493912 506413 + MGP_AJ_P0081289 Prpf31 protein_coding protein_coding MGP_AJ_T0081290.1 MGP_AJ_G0031499.1 mouse_genomes_project 7 493912 506414 + MGP_AJ_P0081290 Prpf31 protein_coding protein_coding MGP_AJ_T0081291.1 MGP_AJ_G0031499.1 mouse_genomes_project 7 493919 495349 + Prpf31 protein_coding retained_intron MGP_AJ_T0081292.1 MGP_AJ_G0031499.1 mouse_genomes_project 7 493986 500985 + MGP_AJ_P0081292 Prpf31 protein_coding nonsense_mediated_decay MGP_AJ_T0081293.1 MGP_AJ_G0031499.1 mouse_genomes_project 7 494484 505157 + MGP_AJ_P0081293 Prpf31 protein_coding protein_coding MGP_AJ_T0081294.1 MGP_AJ_G0031499.1 mouse_genomes_project 7 500022 500985 + Prpf31 protein_coding retained_intron MGP_AJ_T0015924.1 MGP_AJ_G0014019.1 mouse_genomes_project 7 123298534 123298774 - processed_pseudogene processed_pseudogene MGP_AJ_T0008981.1 MGP_AJ_G0007239.1 mouse_genomes_project 7 98919005 98942202 - Gm15506 lincRNA lincRNA MGP_AJ_T0085837.1 MGP_AJ_G0032789.1 mouse_genomes_project 7 108646719 108647830 + MGP_AJ_P0085837 Olfr479 protein_coding protein_coding MGP_AJ_T0082659.1 MGP_AJ_G0031913.1 mouse_genomes_project 7 26387130 26388522 + MGP_AJ_P0082659 Eid2 protein_coding protein_coding MGP_AJ_T0101866.1 MGP_AJ_G0039748.1 mouse_genomes_project 7 68477967 68479521 + transcribed_processed_pseudogene processed_transcript MGP_AJ_T0101867.1 MGP_AJ_G0039748.1 mouse_genomes_project 7 68478349 68479069 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0083805.1 MGP_AJ_G0032185.1 mouse_genomes_project 7 44551169 44554409 - MGP_AJ_P0083805 Gfy protein_coding protein_coding MGP_AJ_T0086326.1 MGP_AJ_G0032924.1 mouse_genomes_project 7 121839116 121926758 + MGP_AJ_P0086326 Otoa protein_coding protein_coding MGP_AJ_T0086327.1 MGP_AJ_G0032924.1 mouse_genomes_project 7 121839202 121860371 + MGP_AJ_P0086327 Otoa protein_coding protein_coding MGP_AJ_T0086328.1 MGP_AJ_G0032924.1 mouse_genomes_project 7 121839218 121847399 + MGP_AJ_P0086328 Otoa protein_coding protein_coding MGP_AJ_T0086329.1 MGP_AJ_G0032924.1 mouse_genomes_project 7 121839218 121847381 + MGP_AJ_P0086329 Otoa protein_coding protein_coding MGP_AJ_T0086330.1 MGP_AJ_G0032924.1 mouse_genomes_project 7 121876090 121924449 + Otoa protein_coding retained_intron MGP_AJ_T0086331.1 MGP_AJ_G0032924.1 mouse_genomes_project 7 121876095 121926752 + Otoa protein_coding processed_transcript MGP_AJ_T0083580.1 MGP_AJ_G0032134.1 mouse_genomes_project 7 43597831 43603429 + MGP_AJ_P0083580 2410002F23Rik protein_coding protein_coding MGP_AJ_T0083581.1 MGP_AJ_G0032134.1 mouse_genomes_project 7 43597837 43602252 + MGP_AJ_P0083581 2410002F23Rik protein_coding protein_coding MGP_AJ_T0083582.1 MGP_AJ_G0032134.1 mouse_genomes_project 7 43597844 43603427 + MGP_AJ_P0083582 2410002F23Rik protein_coding protein_coding MGP_AJ_T0083583.1 MGP_AJ_G0032134.1 mouse_genomes_project 7 43597863 43602087 + MGP_AJ_P0083583 2410002F23Rik protein_coding protein_coding MGP_AJ_T0083584.1 MGP_AJ_G0032134.1 mouse_genomes_project 7 43597896 43599862 + 2410002F23Rik protein_coding processed_transcript MGP_AJ_T0083585.1 MGP_AJ_G0032134.1 mouse_genomes_project 7 43597896 43603425 + MGP_AJ_P0083585 2410002F23Rik protein_coding protein_coding MGP_AJ_T0083586.1 MGP_AJ_G0032134.1 mouse_genomes_project 7 43597896 43602184 + MGP_AJ_P0083586 2410002F23Rik protein_coding protein_coding MGP_AJ_T0083587.1 MGP_AJ_G0032134.1 mouse_genomes_project 7 43597900 43603423 + MGP_AJ_P0083587 2410002F23Rik protein_coding protein_coding MGP_AJ_T0083588.1 MGP_AJ_G0032134.1 mouse_genomes_project 7 43597906 43599276 + 2410002F23Rik protein_coding processed_transcript MGP_AJ_T0083589.1 MGP_AJ_G0032134.1 mouse_genomes_project 7 43597908 43601954 + MGP_AJ_P0083589 2410002F23Rik protein_coding protein_coding MGP_AJ_T0083590.1 MGP_AJ_G0032134.1 mouse_genomes_project 7 43597909 43601165 + 2410002F23Rik protein_coding processed_transcript MGP_AJ_T0083591.1 MGP_AJ_G0032134.1 mouse_genomes_project 7 43597911 43603422 + MGP_AJ_P0083591 2410002F23Rik protein_coding protein_coding MGP_AJ_T0083592.1 MGP_AJ_G0032134.1 mouse_genomes_project 7 43597913 43603422 + MGP_AJ_P0083592 2410002F23Rik protein_coding protein_coding MGP_AJ_T0083593.1 MGP_AJ_G0032134.1 mouse_genomes_project 7 43597917 43601591 + 2410002F23Rik protein_coding processed_transcript MGP_AJ_T0083594.1 MGP_AJ_G0032134.1 mouse_genomes_project 7 43597927 43601638 + 2410002F23Rik protein_coding processed_transcript MGP_AJ_T0083595.1 MGP_AJ_G0032134.1 mouse_genomes_project 7 43598340 43601911 + MGP_AJ_P0083595 2410002F23Rik protein_coding protein_coding MGP_AJ_T0083596.1 MGP_AJ_G0032134.1 mouse_genomes_project 7 43598551 43603422 + MGP_AJ_P0083596 2410002F23Rik protein_coding protein_coding MGP_AJ_T0083597.1 MGP_AJ_G0032134.1 mouse_genomes_project 7 43599361 43602819 + MGP_AJ_P0083597 2410002F23Rik protein_coding protein_coding MGP_AJ_T0083598.1 MGP_AJ_G0032134.1 mouse_genomes_project 7 43600701 43603425 + MGP_AJ_P0083598 2410002F23Rik protein_coding protein_coding MGP_AJ_T0083599.1 MGP_AJ_G0032134.1 mouse_genomes_project 7 43601074 43602741 + MGP_AJ_P0083599 2410002F23Rik protein_coding protein_coding MGP_AJ_T0101428.1 MGP_AJ_G0039394.1 mouse_genomes_project 7 82062002 82062127 + Gm25907 snoRNA snoRNA MGP_AJ_T0081454.1 MGP_AJ_G0031526.1 mouse_genomes_project 7 1561068 1563511 - MGP_AJ_P0081454 Tmem86b protein_coding protein_coding MGP_AJ_T0081455.1 MGP_AJ_G0031526.1 mouse_genomes_project 7 1561070 1563216 - MGP_AJ_P0081455 Tmem86b protein_coding protein_coding MGP_AJ_T0081456.1 MGP_AJ_G0031526.1 mouse_genomes_project 7 1561434 1564451 - MGP_AJ_P0081456 Tmem86b protein_coding protein_coding MGP_AJ_T0081457.1 MGP_AJ_G0031526.1 mouse_genomes_project 7 1561632 1563365 - MGP_AJ_P0081457 Tmem86b protein_coding protein_coding MGP_AJ_T0084232.1 MGP_AJ_G0032296.1 mouse_genomes_project 7 56185471 56480091 + MGP_AJ_P0084232 Oca2 protein_coding protein_coding MGP_AJ_T0084233.1 MGP_AJ_G0032296.1 mouse_genomes_project 7 56185472 56200639 + MGP_AJ_P0084233 Oca2 protein_coding protein_coding MGP_AJ_T0084234.1 MGP_AJ_G0032296.1 mouse_genomes_project 7 56185488 56479838 + MGP_AJ_P0084234 Oca2 protein_coding nonsense_mediated_decay MGP_AJ_T0084235.1 MGP_AJ_G0032296.1 mouse_genomes_project 7 56185492 56226350 + MGP_AJ_P0084235 Oca2 protein_coding protein_coding MGP_AJ_T0084236.1 MGP_AJ_G0032296.1 mouse_genomes_project 7 56185519 56480086 + MGP_AJ_P0084236 Oca2 protein_coding nonsense_mediated_decay MGP_AJ_T0084237.1 MGP_AJ_G0032296.1 mouse_genomes_project 7 56254372 56269806 + Oca2 protein_coding processed_transcript MGP_AJ_T0086277.1 MGP_AJ_G0032909.1 mouse_genomes_project 7 120923864 120940434 - MGP_AJ_P0086277 Crym protein_coding protein_coding MGP_AJ_T0086278.1 MGP_AJ_G0032909.1 mouse_genomes_project 7 120934569 120940434 - Crym protein_coding retained_intron MGP_AJ_T0002256.1 MGP_AJ_G0002167.1 mouse_genomes_project 7 73632050 73632207 + TEC TEC MGP_AJ_T0010827.1 MGP_AJ_G0008949.1 mouse_genomes_project 7 126921 127003 + Mir294 miRNA miRNA MGP_AJ_T0081900.1 MGP_AJ_G0031693.1 mouse_genomes_project 7 14372516 14376156 + MGP_AJ_P0081900 Gng8 protein_coding protein_coding MGP_AJ_T0081901.1 MGP_AJ_G0031693.1 mouse_genomes_project 7 14372942 14376166 + MGP_AJ_P0081901 Gng8 protein_coding protein_coding MGP_AJ_T0081902.1 MGP_AJ_G0031693.1 mouse_genomes_project 7 14373001 14376154 + MGP_AJ_P0081902 Gng8 protein_coding protein_coding MGP_AJ_T0081903.1 MGP_AJ_G0031693.1 mouse_genomes_project 7 14373051 14376157 + Gng8 protein_coding processed_transcript MGP_AJ_T0081904.1 MGP_AJ_G0031693.1 mouse_genomes_project 7 14375377 14376167 + Gng8 protein_coding retained_intron MGP_AJ_T0081905.1 MGP_AJ_G0031693.1 mouse_genomes_project 7 14375675 14376094 + Gng8 protein_coding retained_intron MGP_AJ_T0087663.1 MGP_AJ_G0033211.1 mouse_genomes_project 7 142423652 142431801 - MGP_AJ_P0087663 Slc25a22 protein_coding protein_coding MGP_AJ_T0087664.1 MGP_AJ_G0033211.1 mouse_genomes_project 7 142423657 142431736 - Slc25a22 protein_coding retained_intron MGP_AJ_T0087665.1 MGP_AJ_G0033211.1 mouse_genomes_project 7 142423657 142431540 - MGP_AJ_P0087665 Slc25a22 protein_coding protein_coding MGP_AJ_T0087666.1 MGP_AJ_G0033211.1 mouse_genomes_project 7 142423657 142428503 - MGP_AJ_P0087666 Slc25a22 protein_coding protein_coding MGP_AJ_T0087667.1 MGP_AJ_G0033211.1 mouse_genomes_project 7 142423657 142431546 - MGP_AJ_P0087667 Slc25a22 protein_coding protein_coding MGP_AJ_T0087668.1 MGP_AJ_G0033211.1 mouse_genomes_project 7 142423660 142429250 - Slc25a22 protein_coding retained_intron MGP_AJ_T0087669.1 MGP_AJ_G0033211.1 mouse_genomes_project 7 142423660 142431547 - MGP_AJ_P0087669 Slc25a22 protein_coding nonsense_mediated_decay MGP_AJ_T0087670.1 MGP_AJ_G0033211.1 mouse_genomes_project 7 142423664 142426662 - MGP_AJ_P0087670 Slc25a22 protein_coding protein_coding MGP_AJ_T0087671.1 MGP_AJ_G0033211.1 mouse_genomes_project 7 142424862 142425947 - Slc25a22 protein_coding retained_intron MGP_AJ_T0087672.1 MGP_AJ_G0033211.1 mouse_genomes_project 7 142424928 142425968 - Slc25a22 protein_coding retained_intron MGP_AJ_T0087673.1 MGP_AJ_G0033211.1 mouse_genomes_project 7 142425094 142425507 - MGP_AJ_P0087673 Slc25a22 protein_coding protein_coding MGP_AJ_T0087674.1 MGP_AJ_G0033211.1 mouse_genomes_project 7 142425276 142426757 - Slc25a22 protein_coding retained_intron MGP_AJ_T0087675.1 MGP_AJ_G0033211.1 mouse_genomes_project 7 142425484 142429306 - MGP_AJ_P0087675 Slc25a22 protein_coding protein_coding MGP_AJ_T0087676.1 MGP_AJ_G0033211.1 mouse_genomes_project 7 142425534 142428332 - MGP_AJ_P0087676 Slc25a22 protein_coding protein_coding MGP_AJ_T0087677.1 MGP_AJ_G0033211.1 mouse_genomes_project 7 142425547 142428224 - MGP_AJ_P0087677 Slc25a22 protein_coding nonsense_mediated_decay MGP_AJ_T0087678.1 MGP_AJ_G0033211.1 mouse_genomes_project 7 142425551 142427916 - MGP_AJ_P0087678 Slc25a22 protein_coding protein_coding MGP_AJ_T0087679.1 MGP_AJ_G0033211.1 mouse_genomes_project 7 142425801 142427879 - Slc25a22 protein_coding retained_intron MGP_AJ_T0087680.1 MGP_AJ_G0033211.1 mouse_genomes_project 7 142425815 142431502 - MGP_AJ_P0087680 Slc25a22 protein_coding nonsense_mediated_decay MGP_AJ_T0087681.1 MGP_AJ_G0033211.1 mouse_genomes_project 7 142425953 142429232 - Slc25a22 protein_coding processed_transcript MGP_AJ_T0087682.1 MGP_AJ_G0033211.1 mouse_genomes_project 7 142426019 142431501 - MGP_AJ_P0087682 Slc25a22 protein_coding protein_coding MGP_AJ_T0087683.1 MGP_AJ_G0033211.1 mouse_genomes_project 7 142426493 142429233 - Slc25a22 protein_coding retained_intron MGP_AJ_T0087684.1 MGP_AJ_G0033211.1 mouse_genomes_project 7 142426609 142428509 - MGP_AJ_P0087684 Slc25a22 protein_coding protein_coding MGP_AJ_T0087685.1 MGP_AJ_G0033211.1 mouse_genomes_project 7 142427505 142428513 - MGP_AJ_P0087685 Slc25a22 protein_coding protein_coding MGP_AJ_T0087686.1 MGP_AJ_G0033211.1 mouse_genomes_project 7 142427838 142428452 - MGP_AJ_P0087686 Slc25a22 protein_coding protein_coding MGP_AJ_T0087687.1 MGP_AJ_G0033211.1 mouse_genomes_project 7 142427870 142428503 - MGP_AJ_P0087687 Slc25a22 protein_coding protein_coding MGP_AJ_T0081730.1 MGP_AJ_G0031641.1 mouse_genomes_project 7 10387792 10388680 - MGP_AJ_P0081730 Vmn1r87 protein_coding protein_coding MGP_AJ_T0084006.1 MGP_AJ_G0032235.1 mouse_genomes_project 7 45322566 45329944 + MGP_AJ_P0084006 Ccdc114 protein_coding protein_coding MGP_AJ_T0084007.1 MGP_AJ_G0032235.1 mouse_genomes_project 7 45322710 45323562 + Ccdc114 protein_coding retained_intron MGP_AJ_T0084008.1 MGP_AJ_G0032235.1 mouse_genomes_project 7 45322737 45329950 + MGP_AJ_P0084008 Ccdc114 protein_coding protein_coding MGP_AJ_T0084009.1 MGP_AJ_G0032235.1 mouse_genomes_project 7 45322737 45335050 + MGP_AJ_P0084009 Ccdc114 protein_coding protein_coding MGP_AJ_T0084010.1 MGP_AJ_G0032235.1 mouse_genomes_project 7 45323014 45347095 + MGP_AJ_P0084010 Ccdc114 protein_coding protein_coding MGP_AJ_T0015691.1 MGP_AJ_G0013786.1 mouse_genomes_project 7 1227181 1227546 + processed_pseudogene processed_pseudogene MGP_AJ_T0085810.1 MGP_AJ_G0032769.1 mouse_genomes_project 7 107698488 107699442 + MGP_AJ_P0085810 Olfr714 protein_coding protein_coding MGP_AJ_T0085087.1 MGP_AJ_G0032498.1 mouse_genomes_project 7 97623662 97628416 - MGP_AJ_P0085087 Thrsp protein_coding protein_coding MGP_AJ_T0085088.1 MGP_AJ_G0032498.1 mouse_genomes_project 7 97626836 97628205 - Thrsp protein_coding retained_intron MGP_AJ_T0002232.1 MGP_AJ_G0002144.1 mouse_genomes_project 7 55051958 55053349 + TEC TEC MGP_AJ_T0081689.1 MGP_AJ_G0031631.1 mouse_genomes_project 7 10210570 10218543 + MGP_AJ_P0081689 Zfp324 protein_coding protein_coding MGP_AJ_T0081690.1 MGP_AJ_G0031631.1 mouse_genomes_project 7 10210577 10218957 + MGP_AJ_P0081690 Zfp324 protein_coding nonsense_mediated_decay MGP_AJ_T0081691.1 MGP_AJ_G0031631.1 mouse_genomes_project 7 10210599 10218520 + MGP_AJ_P0081691 Zfp324 protein_coding nonsense_mediated_decay MGP_AJ_T0102890.1 MGP_AJ_G0040630.1 mouse_genomes_project 7 103289806 103291833 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0005195.1 MGP_AJ_G0004422.1 mouse_genomes_project 7 33502132 33502485 + Gm45095 antisense antisense MGP_AJ_T0081671.1 MGP_AJ_G0031626.1 mouse_genomes_project 7 10076604 10093168 + MGP_AJ_P0081671 Zfp110 protein_coding protein_coding MGP_AJ_T0081672.1 MGP_AJ_G0031626.1 mouse_genomes_project 7 10076880 10079250 + Zfp110 protein_coding retained_intron MGP_AJ_T0081673.1 MGP_AJ_G0031626.1 mouse_genomes_project 7 10077326 10092516 + MGP_AJ_P0081673 Zfp110 protein_coding protein_coding MGP_AJ_T0081674.1 MGP_AJ_G0031626.1 mouse_genomes_project 7 10078854 10087494 + Zfp110 protein_coding processed_transcript MGP_AJ_T0081759.1 MGP_AJ_G0031648.1 mouse_genomes_project 7 10698909 10721885 + MGP_AJ_P0081759 Bsph1 protein_coding protein_coding MGP_AJ_T0081760.1 MGP_AJ_G0031648.1 mouse_genomes_project 7 10698924 10721815 + MGP_AJ_P0081760 Bsph1 protein_coding protein_coding MGP_AJ_T0086558.1 MGP_AJ_G0032967.1 mouse_genomes_project 7 127312646 127324363 - MGP_AJ_P0086558 Atxn2l protein_coding protein_coding MGP_AJ_T0086559.1 MGP_AJ_G0032967.1 mouse_genomes_project 7 127312653 127323340 - MGP_AJ_P0086559 Atxn2l protein_coding protein_coding MGP_AJ_T0086560.1 MGP_AJ_G0032967.1 mouse_genomes_project 7 127312724 127324281 - MGP_AJ_P0086560 Atxn2l protein_coding protein_coding MGP_AJ_T0086561.1 MGP_AJ_G0032967.1 mouse_genomes_project 7 127313090 127314314 - MGP_AJ_P0086561 Atxn2l protein_coding protein_coding MGP_AJ_T0086562.1 MGP_AJ_G0032967.1 mouse_genomes_project 7 127313900 127323244 - MGP_AJ_P0086562 Atxn2l protein_coding protein_coding MGP_AJ_T0086563.1 MGP_AJ_G0032967.1 mouse_genomes_project 7 127320076 127323026 - MGP_AJ_P0086563 Atxn2l protein_coding protein_coding MGP_AJ_T0102747.1 MGP_AJ_G0040488.1 mouse_genomes_project 7 7495845 7499635 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0102822.1 MGP_AJ_G0040562.1 mouse_genomes_project 7 41406200 41407097 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0102870.1 MGP_AJ_G0040610.1 mouse_genomes_project 7 85530029 85532573 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0100168.1 MGP_AJ_G0038134.1 mouse_genomes_project 7 98740838 98741002 + Gm23040 snRNA snRNA MGP_AJ_T0008821.1 MGP_AJ_G0007121.1 mouse_genomes_project 7 17246746 17251749 - Gm26890 lincRNA lincRNA MGP_AJ_T0010826.1 MGP_AJ_G0008948.1 mouse_genomes_project 7 126621 126701 + Mir293 miRNA miRNA MGP_AJ_T0082062.1 MGP_AJ_G0031749.1 mouse_genomes_project 7 17003566 17005134 + Ppp1r13l protein_coding processed_transcript MGP_AJ_T0082063.1 MGP_AJ_G0031749.1 mouse_genomes_project 7 17003587 17015567 + MGP_AJ_P0082063 Ppp1r13l protein_coding protein_coding MGP_AJ_T0082064.1 MGP_AJ_G0031749.1 mouse_genomes_project 7 17004463 17015563 + MGP_AJ_P0082064 Ppp1r13l protein_coding protein_coding MGP_AJ_T0082065.1 MGP_AJ_G0031749.1 mouse_genomes_project 7 17005033 17024176 + MGP_AJ_P0082065 Ppp1r13l protein_coding protein_coding MGP_AJ_T0082066.1 MGP_AJ_G0031749.1 mouse_genomes_project 7 17014127 17015541 + MGP_AJ_P0082066 Ppp1r13l protein_coding protein_coding MGP_AJ_T0081649.1 MGP_AJ_G0031613.1 mouse_genomes_project 7 9426915 9427842 + MGP_AJ_P0081649 Vmn1r80 protein_coding protein_coding MGP_AJ_T0101406.1 MGP_AJ_G0039372.1 mouse_genomes_project 7 44495746 44495833 - Snord35b snoRNA snoRNA MGP_AJ_T0102788.1 MGP_AJ_G0040529.1 mouse_genomes_project 7 13072697 13072953 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0005267.1 MGP_AJ_G0004471.1 mouse_genomes_project 7 111581551 111582418 + Gm16336 antisense antisense MGP_AJ_T0081276.1 MGP_AJ_G0031497.1 mouse_genomes_project 7 481298 484251 + MGP_AJ_P0081276 Ndufa3 protein_coding protein_coding MGP_AJ_T0081277.1 MGP_AJ_G0031497.1 mouse_genomes_project 7 481305 484076 + Ndufa3 protein_coding retained_intron MGP_AJ_T0081278.1 MGP_AJ_G0031497.1 mouse_genomes_project 7 481310 481631 + Ndufa3 protein_coding retained_intron MGP_AJ_T0081279.1 MGP_AJ_G0031497.1 mouse_genomes_project 7 481311 484052 + MGP_AJ_P0081279 Ndufa3 protein_coding protein_coding MGP_AJ_T0081280.1 MGP_AJ_G0031497.1 mouse_genomes_project 7 481316 484087 + MGP_AJ_P0081280 Ndufa3 protein_coding nonsense_mediated_decay MGP_AJ_T0081281.1 MGP_AJ_G0031497.1 mouse_genomes_project 7 481542 484009 + MGP_AJ_P0081281 Ndufa3 protein_coding nonsense_mediated_decay MGP_AJ_T0100137.1 MGP_AJ_G0038103.1 mouse_genomes_project 7 16132150 16132257 + Gm26062 snRNA snRNA MGP_AJ_T0100167.1 MGP_AJ_G0038133.1 mouse_genomes_project 7 97141097 97141206 - Gm22226 snRNA snRNA MGP_AJ_T0087367.1 MGP_AJ_G0033125.1 mouse_genomes_project 7 139797827 139823467 + Ppp2r2d protein_coding retained_intron MGP_AJ_T0087368.1 MGP_AJ_G0033125.1 mouse_genomes_project 7 139798134 139821550 + MGP_AJ_P0087368 Ppp2r2d protein_coding nonsense_mediated_decay MGP_AJ_T0087369.1 MGP_AJ_G0033125.1 mouse_genomes_project 7 139798257 139834250 + MGP_AJ_P0087369 Ppp2r2d protein_coding protein_coding MGP_AJ_T0087370.1 MGP_AJ_G0033125.1 mouse_genomes_project 7 139798335 139821593 + Ppp2r2d protein_coding processed_transcript MGP_AJ_T0087371.1 MGP_AJ_G0033125.1 mouse_genomes_project 7 139798368 139828333 + MGP_AJ_P0087371 Ppp2r2d protein_coding nonsense_mediated_decay MGP_AJ_T0087372.1 MGP_AJ_G0033125.1 mouse_genomes_project 7 139798608 139821568 + Ppp2r2d protein_coding processed_transcript MGP_AJ_T0087373.1 MGP_AJ_G0033125.1 mouse_genomes_project 7 139820175 139828327 + MGP_AJ_P0087373 Ppp2r2d protein_coding nonsense_mediated_decay MGP_AJ_T0083150.1 MGP_AJ_G0032027.1 mouse_genomes_project 7 29108643 29124754 - MGP_AJ_P0083150 Mag protein_coding protein_coding MGP_AJ_T0083151.1 MGP_AJ_G0032027.1 mouse_genomes_project 7 29108650 29124252 - MGP_AJ_P0083151 Mag protein_coding protein_coding MGP_AJ_T0083152.1 MGP_AJ_G0032027.1 mouse_genomes_project 7 29108998 29124233 - MGP_AJ_P0083152 Mag protein_coding protein_coding MGP_AJ_T0083153.1 MGP_AJ_G0032027.1 mouse_genomes_project 7 29109053 29124233 - MGP_AJ_P0083153 Mag protein_coding protein_coding MGP_AJ_T0083154.1 MGP_AJ_G0032027.1 mouse_genomes_project 7 29116576 29124795 - Mag protein_coding retained_intron MGP_AJ_T0083155.1 MGP_AJ_G0032027.1 mouse_genomes_project 7 29118221 29124787 - MGP_AJ_P0083155 Mag protein_coding protein_coding MGP_AJ_T0083156.1 MGP_AJ_G0032027.1 mouse_genomes_project 7 29121534 29124746 - MGP_AJ_P0083156 Mag protein_coding protein_coding MGP_AJ_T0083157.1 MGP_AJ_G0032027.1 mouse_genomes_project 7 29121911 29124767 - Mag protein_coding processed_transcript MGP_AJ_T0101450.1 MGP_AJ_G0039416.1 mouse_genomes_project 7 120043919 120044045 - Gm23321 snoRNA snoRNA MGP_AJ_T0083277.1 MGP_AJ_G0032054.1 mouse_genomes_project 7 32635991 32639888 - MGP_AJ_P0083277 protein_coding protein_coding MGP_AJ_T0015719.1 MGP_AJ_G0013814.1 mouse_genomes_project 7 11434728 11435182 - processed_pseudogene processed_pseudogene MGP_AJ_T0081643.1 MGP_AJ_G0031607.1 mouse_genomes_project 7 9050403 9051318 + MGP_AJ_P0081643 Vmn1r74 protein_coding protein_coding MGP_AJ_T0010901.1 MGP_AJ_G0009023.1 mouse_genomes_project 7 79976574 79976670 + Gm24541 miRNA miRNA MGP_AJ_T0087783.1 MGP_AJ_G0033235.1 mouse_genomes_project 7 143292900 143293876 + MGP_AJ_P0087783 protein_coding protein_coding MGP_AJ_T0081577.1 MGP_AJ_G0031570.1 mouse_genomes_project 7 3175435 3194369 + MGP_AJ_P0081577 Galp protein_coding protein_coding MGP_AJ_T0081578.1 MGP_AJ_G0031570.1 mouse_genomes_project 7 3180322 3189658 + Galp protein_coding processed_transcript MGP_AJ_T0082491.1 MGP_AJ_G0031869.1 mouse_genomes_project 7 24715785 24731909 + MGP_AJ_P0082491 Cyp2b19 protein_coding protein_coding MGP_AJ_T0082492.1 MGP_AJ_G0031869.1 mouse_genomes_project 7 24715806 24724910 + Cyp2b19 protein_coding retained_intron MGP_AJ_T0082493.1 MGP_AJ_G0031869.1 mouse_genomes_project 7 24725826 24730670 + Cyp2b19 protein_coding retained_intron MGP_AJ_T0010920.1 MGP_AJ_G0009042.1 mouse_genomes_project 7 128341638 128341729 + miRNA miRNA MGP_AJ_T0087969.1 MGP_AJ_G0033269.1 mouse_genomes_project 7 144975970 145136919 + MGP_AJ_P0087969 Shank2 protein_coding unknown_likely_coding MGP_AJ_T0087970.1 MGP_AJ_G0033269.1 mouse_genomes_project 7 144975972 145137061 + MGP_AJ_P0087970 Shank2 protein_coding unknown_likely_coding MGP_AJ_T0087971.1 MGP_AJ_G0033269.1 mouse_genomes_project 7 144998537 145430220 + MGP_AJ_P0087971 Shank2 protein_coding protein_coding MGP_AJ_T0087972.1 MGP_AJ_G0033269.1 mouse_genomes_project 7 145184281 145430220 + MGP_AJ_P0087972 Shank2 protein_coding protein_coding MGP_AJ_T0087973.1 MGP_AJ_G0033269.1 mouse_genomes_project 7 145296187 145428407 + MGP_AJ_P0087973 Shank2 protein_coding protein_coding MGP_AJ_T0087974.1 MGP_AJ_G0033269.1 mouse_genomes_project 7 145296241 145430208 + Shank2 protein_coding retained_intron MGP_AJ_T0087975.1 MGP_AJ_G0033269.1 mouse_genomes_project 7 145423566 145426396 + Shank2 protein_coding processed_transcript MGP_AJ_T0085830.1 MGP_AJ_G0032782.1 mouse_genomes_project 7 108398398 108399325 + MGP_AJ_P0085830 Olfr467 protein_coding protein_coding MGP_AJ_T0018338.1 MGP_AJ_G0015638.1 mouse_genomes_project 7 27758294 27762415 - A330087D11Rik processed_transcript processed_transcript MGP_AJ_T0015763.1 MGP_AJ_G0013858.1 mouse_genomes_project 7 28474492 28474885 + processed_pseudogene processed_pseudogene MGP_AJ_T0102831.1 MGP_AJ_G0040571.1 mouse_genomes_project 7 43427950 43428101 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0084268.1 MGP_AJ_G0032303.1 mouse_genomes_project 7 59694422 59717696 - MGP_AJ_P0084268 Snrpn protein_coding protein_coding MGP_AJ_T0084269.1 MGP_AJ_G0032303.1 mouse_genomes_project 7 59694429 59858021 - MGP_AJ_P0084269 Snrpn protein_coding protein_coding MGP_AJ_T0081425.1 MGP_AJ_G0031521.1 mouse_genomes_project 7 1424298 1435425 - MGP_AJ_P0081425 Tnnt1 protein_coding protein_coding MGP_AJ_T0081426.1 MGP_AJ_G0031521.1 mouse_genomes_project 7 1424298 1435454 - MGP_AJ_P0081426 Tnnt1 protein_coding protein_coding MGP_AJ_T0081427.1 MGP_AJ_G0031521.1 mouse_genomes_project 7 1424391 1435409 - MGP_AJ_P0081427 Tnnt1 protein_coding protein_coding MGP_AJ_T0081428.1 MGP_AJ_G0031521.1 mouse_genomes_project 7 1424391 1435425 - MGP_AJ_P0081428 Tnnt1 protein_coding protein_coding MGP_AJ_T0081429.1 MGP_AJ_G0031521.1 mouse_genomes_project 7 1424483 1433818 - MGP_AJ_P0081429 Tnnt1 protein_coding protein_coding MGP_AJ_T0081430.1 MGP_AJ_G0031521.1 mouse_genomes_project 7 1424512 1429388 - Tnnt1 protein_coding retained_intron MGP_AJ_T0081431.1 MGP_AJ_G0031521.1 mouse_genomes_project 7 1424514 1427477 - Tnnt1 protein_coding processed_transcript MGP_AJ_T0081432.1 MGP_AJ_G0031521.1 mouse_genomes_project 7 1427019 1435411 - MGP_AJ_P0081432 Tnnt1 protein_coding protein_coding MGP_AJ_T0081433.1 MGP_AJ_G0031521.1 mouse_genomes_project 7 1427051 1429248 - Tnnt1 protein_coding retained_intron MGP_AJ_T0081434.1 MGP_AJ_G0031521.1 mouse_genomes_project 7 1427959 1434065 - MGP_AJ_P0081434 Tnnt1 protein_coding protein_coding MGP_AJ_T0081435.1 MGP_AJ_G0031521.1 mouse_genomes_project 7 1428027 1434024 - MGP_AJ_P0081435 Tnnt1 protein_coding protein_coding MGP_AJ_T0081436.1 MGP_AJ_G0031521.1 mouse_genomes_project 7 1429059 1435832 - MGP_AJ_P0081436 Tnnt1 protein_coding protein_coding MGP_AJ_T0081437.1 MGP_AJ_G0031521.1 mouse_genomes_project 7 1433278 1434557 - MGP_AJ_P0081437 Tnnt1 protein_coding protein_coding MGP_AJ_T0008951.1 MGP_AJ_G0007221.1 mouse_genomes_project 7 79589368 79590750 - Gm45168 lincRNA lincRNA MGP_AJ_T0008952.1 MGP_AJ_G0007221.1 mouse_genomes_project 7 79589509 79590761 - Gm45168 lincRNA lincRNA MGP_AJ_T0008916.1 MGP_AJ_G0007197.1 mouse_genomes_project 7 72537235 72537575 - Gm28744 lincRNA lincRNA MGP_AJ_T0081531.1 MGP_AJ_G0031547.1 mouse_genomes_project 7 1946699 1959239 - Zfp579 protein_coding processed_transcript MGP_AJ_T0081532.1 MGP_AJ_G0031547.1 mouse_genomes_project 7 1956035 1959342 - Zfp579 protein_coding processed_transcript MGP_AJ_T0081533.1 MGP_AJ_G0031547.1 mouse_genomes_project 7 1956035 1958524 - MGP_AJ_P0081533 Zfp579 protein_coding protein_coding MGP_AJ_T0081534.1 MGP_AJ_G0031547.1 mouse_genomes_project 7 1956037 1959285 - MGP_AJ_P0081534 Zfp579 protein_coding protein_coding MGP_AJ_T0081535.1 MGP_AJ_G0031547.1 mouse_genomes_project 7 1957384 1959269 - MGP_AJ_P0081535 Zfp579 protein_coding protein_coding MGP_AJ_T0081536.1 MGP_AJ_G0031547.1 mouse_genomes_project 7 1958194 1959213 - Zfp579 protein_coding processed_transcript MGP_AJ_T0008907.1 MGP_AJ_G0007188.1 mouse_genomes_project 7 70132582 70133386 - Gm29327 lincRNA lincRNA MGP_AJ_T0015785.1 MGP_AJ_G0013880.1 mouse_genomes_project 7 32425165 32425752 + processed_pseudogene processed_pseudogene MGP_AJ_T0008969.1 MGP_AJ_G0007229.1 mouse_genomes_project 7 88488081 88499730 - lincRNA lincRNA MGP_AJ_T0085808.1 MGP_AJ_G0032767.1 mouse_genomes_project 7 107626264 107627996 - MGP_AJ_P0085808 Olfr2 protein_coding protein_coding MGP_AJ_T0081464.1 MGP_AJ_G0031528.1 mouse_genomes_project 7 1592202 1615887 - MGP_AJ_P0081464 Hspbp1 protein_coding protein_coding MGP_AJ_T0081465.1 MGP_AJ_G0031528.1 mouse_genomes_project 7 1593817 1596291 - MGP_AJ_P0081465 Hspbp1 protein_coding protein_coding MGP_AJ_T0081466.1 MGP_AJ_G0031528.1 mouse_genomes_project 7 1595861 1596456 - Hspbp1 protein_coding processed_transcript MGP_AJ_T0081467.1 MGP_AJ_G0031528.1 mouse_genomes_project 7 1596268 1615813 - MGP_AJ_P0081467 Hspbp1 protein_coding protein_coding MGP_AJ_T0081468.1 MGP_AJ_G0031528.1 mouse_genomes_project 7 1608893 1615480 - MGP_AJ_P0081468 Hspbp1 protein_coding protein_coding MGP_AJ_T0081469.1 MGP_AJ_G0031528.1 mouse_genomes_project 7 1608893 1615800 - MGP_AJ_P0081469 Hspbp1 protein_coding protein_coding MGP_AJ_T0085390.1 MGP_AJ_G0032564.1 mouse_genomes_project 7 102166013 102181482 - MGP_AJ_P0085390 Inppl1 protein_coding protein_coding MGP_AJ_T0085391.1 MGP_AJ_G0032564.1 mouse_genomes_project 7 102166020 102181178 - MGP_AJ_P0085391 Inppl1 protein_coding protein_coding MGP_AJ_T0085392.1 MGP_AJ_G0032564.1 mouse_genomes_project 7 102166034 102172647 - Inppl1 protein_coding processed_transcript MGP_AJ_T0085393.1 MGP_AJ_G0032564.1 mouse_genomes_project 7 102167324 102181159 - MGP_AJ_P0085393 Inppl1 protein_coding protein_coding MGP_AJ_T0002284.1 MGP_AJ_G0002195.1 mouse_genomes_project 7 81618211 81620420 - TEC TEC MGP_AJ_T0087571.1 MGP_AJ_G0033193.1 mouse_genomes_project 7 142089716 142106688 - MGP_AJ_P0087571 Ano9 protein_coding protein_coding MGP_AJ_T0081959.1 MGP_AJ_G0031721.1 mouse_genomes_project 7 16478699 16497120 + MGP_AJ_P0081959 Mill2 protein_coding protein_coding MGP_AJ_T0081960.1 MGP_AJ_G0031721.1 mouse_genomes_project 7 16478722 16501563 + MGP_AJ_P0081960 Mill2 protein_coding nonsense_mediated_decay MGP_AJ_T0081961.1 MGP_AJ_G0031721.1 mouse_genomes_project 7 16478725 16500833 + MGP_AJ_P0081961 Mill2 protein_coding unknown_likely_coding MGP_AJ_T0081962.1 MGP_AJ_G0031721.1 mouse_genomes_project 7 16478734 16494711 + Mill2 protein_coding processed_transcript MGP_AJ_T0018420.1 MGP_AJ_G0015670.1 mouse_genomes_project 7 128299204 128307551 + B130055M24Rik processed_transcript processed_transcript MGP_AJ_T0015792.1 MGP_AJ_G0013887.1 mouse_genomes_project 7 37388451 37392040 - processed_pseudogene processed_pseudogene MGP_AJ_T0015826.1 MGP_AJ_G0013921.1 mouse_genomes_project 7 47978049 47978719 - processed_pseudogene processed_pseudogene MGP_AJ_T0002286.1 MGP_AJ_G0002197.1 mouse_genomes_project 7 92818817 92822574 + TEC TEC MGP_AJ_T0100188.1 MGP_AJ_G0038154.1 mouse_genomes_project 7 128907573 128907729 - Gm22809 snRNA snRNA MGP_AJ_T0101435.1 MGP_AJ_G0039401.1 mouse_genomes_project 7 99736371 99736519 - Snord15a snoRNA snoRNA MGP_AJ_T0085171.1 MGP_AJ_G0032514.1 mouse_genomes_project 7 98723113 98732096 + MGP_AJ_P0085171 Lrrc32 protein_coding protein_coding MGP_AJ_T0085172.1 MGP_AJ_G0032514.1 mouse_genomes_project 7 98723535 98736028 + MGP_AJ_P0085172 Lrrc32 protein_coding protein_coding MGP_AJ_T0085173.1 MGP_AJ_G0032514.1 mouse_genomes_project 7 98728063 98735682 + MGP_AJ_P0085173 Lrrc32 protein_coding protein_coding MGP_AJ_T0018340.1 MGP_AJ_G0015640.1 mouse_genomes_project 7 41546283 41651625 - processed_transcript lincRNA MGP_AJ_T0083474.1 MGP_AJ_G0032094.1 mouse_genomes_project 7 41084231 41165098 + MGP_AJ_P0083474 Vmn2r60 protein_coding protein_coding MGP_AJ_T0081865.1 MGP_AJ_G0031688.1 mouse_genomes_project 7 14259476 14277259 + MGP_AJ_P0081865 Slc1a5 protein_coding protein_coding MGP_AJ_T0081866.1 MGP_AJ_G0031688.1 mouse_genomes_project 7 14259504 14277259 + Slc1a5 protein_coding retained_intron MGP_AJ_T0081867.1 MGP_AJ_G0031688.1 mouse_genomes_project 7 14260534 14266246 + Slc1a5 protein_coding retained_intron MGP_AJ_T0081868.1 MGP_AJ_G0031688.1 mouse_genomes_project 7 14262873 14272672 + Slc1a5 protein_coding processed_transcript MGP_AJ_T0081869.1 MGP_AJ_G0031688.1 mouse_genomes_project 7 14264794 14266246 + Slc1a5 protein_coding retained_intron MGP_AJ_T0081870.1 MGP_AJ_G0031688.1 mouse_genomes_project 7 14265504 14272762 + Slc1a5 protein_coding retained_intron MGP_AJ_T0081871.1 MGP_AJ_G0031688.1 mouse_genomes_project 7 14271992 14275140 + Slc1a5 protein_coding processed_transcript MGP_AJ_T0081872.1 MGP_AJ_G0031688.1 mouse_genomes_project 7 14272142 14274909 + Slc1a5 protein_coding retained_intron MGP_AJ_T0084176.1 MGP_AJ_G0032288.1 mouse_genomes_project 7 51957304 51961430 - MGP_AJ_P0084176 1700015G11Rik protein_coding protein_coding MGP_AJ_T0084177.1 MGP_AJ_G0032288.1 mouse_genomes_project 7 51957306 51961405 - MGP_AJ_P0084177 1700015G11Rik protein_coding protein_coding MGP_AJ_T0084178.1 MGP_AJ_G0032288.1 mouse_genomes_project 7 51957308 51961397 - MGP_AJ_P0084178 1700015G11Rik protein_coding protein_coding MGP_AJ_T0084179.1 MGP_AJ_G0032288.1 mouse_genomes_project 7 51957311 51961384 - MGP_AJ_P0084179 1700015G11Rik protein_coding protein_coding MGP_AJ_T0008882.1 MGP_AJ_G0007170.1 mouse_genomes_project 7 49772993 49774432 - Gm26856 lincRNA lincRNA MGP_AJ_T0082480.1 MGP_AJ_G0031866.1 mouse_genomes_project 7 24349601 24402595 + MGP_AJ_P0082480 Nlrp4a protein_coding protein_coding MGP_AJ_T0082481.1 MGP_AJ_G0031866.1 mouse_genomes_project 7 24350102 24401669 + MGP_AJ_P0082481 Nlrp4a protein_coding protein_coding MGP_AJ_T0082482.1 MGP_AJ_G0031866.1 mouse_genomes_project 7 24350134 24366938 + Nlrp4a protein_coding processed_transcript MGP_AJ_T0082483.1 MGP_AJ_G0031866.1 mouse_genomes_project 7 24350134 24379690 + MGP_AJ_P0082483 Nlrp4a protein_coding protein_coding MGP_AJ_T0085234.1 MGP_AJ_G0032530.1 mouse_genomes_project 7 100031248 100032421 + MGP_AJ_P0085234 Olfr521 protein_coding protein_coding MGP_AJ_T0099093.1 MGP_AJ_G0037065.1 mouse_genomes_project 7 120236428 120238729 - Gm26967 sense_intronic sense_intronic MGP_AJ_T0083788.1 MGP_AJ_G0032178.1 mouse_genomes_project 7 44465857 44476342 - MGP_AJ_P0083788 Fcgrt protein_coding protein_coding MGP_AJ_T0081935.1 MGP_AJ_G0031705.1 mouse_genomes_project 7 15307528 15310553 + MGP_AJ_P0081935 Ceacam14 protein_coding protein_coding MGP_AJ_T0102892.1 MGP_AJ_G0040632.1 mouse_genomes_project 7 103531575 103532517 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0085514.1 MGP_AJ_G0032596.1 mouse_genomes_project 7 103007027 103007975 + MGP_AJ_P0085514 Olfr555 protein_coding protein_coding MGP_AJ_T0081980.1 MGP_AJ_G0031728.1 mouse_genomes_project 7 16643295 16646031 + MGP_AJ_P0081980 Irf2bp1 protein_coding protein_coding MGP_AJ_T0085196.1 MGP_AJ_G0032518.1 mouse_genomes_project 7 99130895 99385674 - MGP_AJ_P0085196 Uvrag protein_coding protein_coding MGP_AJ_T0102856.1 MGP_AJ_G0040596.1 mouse_genomes_project 7 48486355 48487247 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0081343.1 MGP_AJ_G0031506.1 mouse_genomes_project 7 617039 624862 - MGP_AJ_P0081343 protein_coding protein_coding MGP_AJ_T0005139.1 MGP_AJ_G0004382.1 mouse_genomes_project 7 1370102 1390413 - Gm15494 antisense antisense MGP_AJ_T0005140.1 MGP_AJ_G0004382.1 mouse_genomes_project 7 1370851 1390449 - Gm15494 antisense antisense MGP_AJ_T0008818.1 MGP_AJ_G0007118.1 mouse_genomes_project 7 16598447 16601205 - Gm26821 lincRNA lincRNA MGP_AJ_T0015775.1 MGP_AJ_G0013870.1 mouse_genomes_project 7 30835190 30835778 + processed_pseudogene processed_pseudogene MGP_AJ_T0018350.1 MGP_AJ_G0015644.1 mouse_genomes_project 7 44354785 44359721 + Gm15545 processed_transcript processed_transcript MGP_AJ_T0018351.1 MGP_AJ_G0015644.1 mouse_genomes_project 7 44354812 44362419 + Gm15545 processed_transcript processed_transcript MGP_AJ_T0018352.1 MGP_AJ_G0015644.1 mouse_genomes_project 7 44354819 44358910 + Gm15545 processed_transcript processed_transcript MGP_AJ_T0018353.1 MGP_AJ_G0015644.1 mouse_genomes_project 7 44354858 44360148 + Gm15545 processed_transcript processed_transcript MGP_AJ_T0081963.1 MGP_AJ_G0031722.1 mouse_genomes_project 7 16509306 16526816 + Pglyrp1 protein_coding processed_transcript MGP_AJ_T0081964.1 MGP_AJ_G0031722.1 mouse_genomes_project 7 16520960 16526798 + MGP_AJ_P0081964 Pglyrp1 protein_coding protein_coding MGP_AJ_T0081965.1 MGP_AJ_G0031722.1 mouse_genomes_project 7 16520973 16521893 + Pglyrp1 protein_coding retained_intron MGP_AJ_T0084930.1 MGP_AJ_G0032441.1 mouse_genomes_project 7 85096478 85104291 - MGP_AJ_P0084930 Vmn2r66 protein_coding protein_coding MGP_AJ_T0015757.1 MGP_AJ_G0013852.1 mouse_genomes_project 7 24931642 24932219 - processed_pseudogene processed_pseudogene MGP_AJ_T0015857.1 MGP_AJ_G0013952.1 mouse_genomes_project 7 74587845 74588073 + processed_pseudogene processed_pseudogene MGP_AJ_T0081504.1 MGP_AJ_G0031536.1 mouse_genomes_project 7 1725201 1730302 - MGP_AJ_P0081504 Tmem238 protein_coding protein_coding MGP_AJ_T0081505.1 MGP_AJ_G0031536.1 mouse_genomes_project 7 1725816 1729719 - MGP_AJ_P0081505 Tmem238 protein_coding nonsense_mediated_decay MGP_AJ_T0005240.1 MGP_AJ_G0004454.1 mouse_genomes_project 7 80806659 80813329 + Gm44649 antisense antisense MGP_AJ_T0005241.1 MGP_AJ_G0004454.1 mouse_genomes_project 7 80806682 80807983 + Gm44649 antisense antisense MGP_AJ_T0102882.1 MGP_AJ_G0040622.1 mouse_genomes_project 7 86296969 86297866 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0102075.1 MGP_AJ_G0039854.1 mouse_genomes_project 7 43048715 43053203 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_AJ_T0102076.1 MGP_AJ_G0039854.1 mouse_genomes_project 7 43050519 43054330 + transcribed_unprocessed_pseudogene processed_transcript MGP_AJ_T0098732.1 MGP_AJ_G0036716.1 mouse_genomes_project 7 132973443 132973563 + n-R5s159 rRNA rRNA MGP_AJ_T0084272.1 MGP_AJ_G0032306.1 mouse_genomes_project 7 62252704 62257342 + MGP_AJ_P0084272 Magel2 protein_coding protein_coding MGP_AJ_T0081345.1 MGP_AJ_G0031508.1 mouse_genomes_project 7 726716 744805 - MGP_AJ_P0081345 protein_coding protein_coding MGP_AJ_T0086218.1 MGP_AJ_G0032890.1 mouse_genomes_project 7 119718892 119742076 - MGP_AJ_P0086218 Gprc5b protein_coding protein_coding MGP_AJ_T0084058.1 MGP_AJ_G0032249.1 mouse_genomes_project 7 46172977 46176666 + MGP_AJ_P0084058 Saa1 protein_coding protein_coding MGP_AJ_T0087325.1 MGP_AJ_G0033109.1 mouse_genomes_project 7 134802579 135147308 - MGP_AJ_P0087325 Adam12 protein_coding protein_coding MGP_AJ_T0087326.1 MGP_AJ_G0033109.1 mouse_genomes_project 7 134805486 135147088 - MGP_AJ_P0087326 Adam12 protein_coding unknown_likely_coding MGP_AJ_T0087327.1 MGP_AJ_G0033109.1 mouse_genomes_project 7 134805574 134884449 - MGP_AJ_P0087327 Adam12 protein_coding protein_coding MGP_AJ_T0087328.1 MGP_AJ_G0033109.1 mouse_genomes_project 7 134898678 135154201 - MGP_AJ_P0087328 Adam12 protein_coding protein_coding MGP_AJ_T0087329.1 MGP_AJ_G0033109.1 mouse_genomes_project 7 134904611 135154342 - MGP_AJ_P0087329 Adam12 protein_coding protein_coding MGP_AJ_T0087330.1 MGP_AJ_G0033109.1 mouse_genomes_project 7 135089385 135091165 - Adam12 protein_coding retained_intron MGP_AJ_T0087331.1 MGP_AJ_G0033109.1 mouse_genomes_project 7 135113090 135147583 - Adam12 protein_coding processed_transcript MGP_AJ_T0084418.1 MGP_AJ_G0032336.1 mouse_genomes_project 7 67065575 67071499 + MGP_AJ_P0084418 Lysmd4 protein_coding protein_coding MGP_AJ_T0084419.1 MGP_AJ_G0032336.1 mouse_genomes_project 7 67065647 67071499 + MGP_AJ_P0084419 Lysmd4 protein_coding protein_coding MGP_AJ_T0085860.1 MGP_AJ_G0032812.1 mouse_genomes_project 7 109345535 109346591 + MGP_AJ_P0085860 Olfr512 protein_coding protein_coding MGP_AJ_T0082969.1 MGP_AJ_G0031990.1 mouse_genomes_project 7 28524418 28526299 + Syne4 protein_coding processed_transcript MGP_AJ_T0082970.1 MGP_AJ_G0031990.1 mouse_genomes_project 7 28524427 28528733 + MGP_AJ_P0082970 Syne4 protein_coding protein_coding MGP_AJ_T0082971.1 MGP_AJ_G0031990.1 mouse_genomes_project 7 28524482 28525350 + Syne4 protein_coding retained_intron MGP_AJ_T0082972.1 MGP_AJ_G0031990.1 mouse_genomes_project 7 28524491 28526733 + MGP_AJ_P0082972 Syne4 protein_coding protein_coding MGP_AJ_T0082973.1 MGP_AJ_G0031990.1 mouse_genomes_project 7 28524496 28526502 + Syne4 protein_coding retained_intron MGP_AJ_T0082974.1 MGP_AJ_G0031990.1 mouse_genomes_project 7 28524499 28526727 + MGP_AJ_P0082974 Syne4 protein_coding protein_coding MGP_AJ_T0082975.1 MGP_AJ_G0031990.1 mouse_genomes_project 7 28524527 28528733 + MGP_AJ_P0082975 Syne4 protein_coding protein_coding MGP_AJ_T0082976.1 MGP_AJ_G0031990.1 mouse_genomes_project 7 28524789 28525987 + Syne4 protein_coding retained_intron MGP_AJ_T0082977.1 MGP_AJ_G0031990.1 mouse_genomes_project 7 28524950 28527038 + Syne4 protein_coding retained_intron MGP_AJ_T0082978.1 MGP_AJ_G0031990.1 mouse_genomes_project 7 28525660 28526509 + Syne4 protein_coding retained_intron MGP_AJ_T0082979.1 MGP_AJ_G0031990.1 mouse_genomes_project 7 28526413 28528733 + Syne4 protein_coding retained_intron MGP_AJ_T0082980.1 MGP_AJ_G0031990.1 mouse_genomes_project 7 28526583 28528729 + MGP_AJ_P0082980 Syne4 protein_coding nonsense_mediated_decay MGP_AJ_T0082981.1 MGP_AJ_G0031990.1 mouse_genomes_project 7 28526628 28528732 + MGP_AJ_P0082981 Syne4 protein_coding nonsense_mediated_decay MGP_AJ_T0082982.1 MGP_AJ_G0031990.1 mouse_genomes_project 7 28526629 28528727 + MGP_AJ_P0082982 Syne4 protein_coding protein_coding MGP_AJ_T0082983.1 MGP_AJ_G0031990.1 mouse_genomes_project 7 28526661 28528731 + MGP_AJ_P0082983 Syne4 protein_coding nonsense_mediated_decay MGP_AJ_T0082984.1 MGP_AJ_G0031990.1 mouse_genomes_project 7 28526881 28528727 + Syne4 protein_coding retained_intron MGP_AJ_T0082985.1 MGP_AJ_G0031990.1 mouse_genomes_project 7 28527453 28528727 + Syne4 protein_coding retained_intron MGP_AJ_T0085233.1 MGP_AJ_G0032529.1 mouse_genomes_project 7 99996437 99997630 + MGP_AJ_P0085233 Olfr520 protein_coding protein_coding MGP_AJ_T0083248.1 MGP_AJ_G0032044.1 mouse_genomes_project 7 29608067 29609392 + MGP_AJ_P0083248 Scgb1b3 protein_coding protein_coding MGP_AJ_T0081761.1 MGP_AJ_G0031649.1 mouse_genomes_project 7 10796207 10812828 - MGP_AJ_P0081761 Bsph2 protein_coding protein_coding MGP_AJ_T0081762.1 MGP_AJ_G0031649.1 mouse_genomes_project 7 10796209 10812828 - MGP_AJ_P0081762 Bsph2 protein_coding nonsense_mediated_decay MGP_AJ_T0082183.1 MGP_AJ_G0031791.1 mouse_genomes_project 7 21721719 21722760 + MGP_AJ_P0082183 protein_coding protein_coding MGP_AJ_T0086647.1 MGP_AJ_G0032980.1 mouse_genomes_project 7 127602717 127606279 + MGP_AJ_P0086647 Ypel3 protein_coding protein_coding MGP_AJ_T0086648.1 MGP_AJ_G0032980.1 mouse_genomes_project 7 127602737 127606276 + MGP_AJ_P0086648 Ypel3 protein_coding protein_coding MGP_AJ_T0086649.1 MGP_AJ_G0032980.1 mouse_genomes_project 7 127602740 127603862 + MGP_AJ_P0086649 Ypel3 protein_coding protein_coding MGP_AJ_T0086650.1 MGP_AJ_G0032980.1 mouse_genomes_project 7 127602761 127604187 + Ypel3 protein_coding processed_transcript MGP_AJ_T0086651.1 MGP_AJ_G0032980.1 mouse_genomes_project 7 127602761 127606278 + Ypel3 protein_coding processed_transcript MGP_AJ_T0086652.1 MGP_AJ_G0032980.1 mouse_genomes_project 7 127602763 127606279 + MGP_AJ_P0086652 Ypel3 protein_coding protein_coding MGP_AJ_T0086653.1 MGP_AJ_G0032980.1 mouse_genomes_project 7 127602767 127605830 + MGP_AJ_P0086653 Ypel3 protein_coding protein_coding MGP_AJ_T0086654.1 MGP_AJ_G0032980.1 mouse_genomes_project 7 127602909 127603635 + MGP_AJ_P0086654 Ypel3 protein_coding protein_coding MGP_AJ_T0086655.1 MGP_AJ_G0032980.1 mouse_genomes_project 7 127602975 127606211 + MGP_AJ_P0086655 Ypel3 protein_coding protein_coding MGP_AJ_T0086656.1 MGP_AJ_G0032980.1 mouse_genomes_project 7 127603268 127605996 + Ypel3 protein_coding processed_transcript MGP_AJ_T0086657.1 MGP_AJ_G0032980.1 mouse_genomes_project 7 127603341 127604054 + Ypel3 protein_coding retained_intron MGP_AJ_T0086927.1 MGP_AJ_G0033031.1 mouse_genomes_project 7 128504995 128553127 - MGP_AJ_P0086927 Bcl7c protein_coding nonsense_mediated_decay MGP_AJ_T0086928.1 MGP_AJ_G0033031.1 mouse_genomes_project 7 128511542 128552981 - MGP_AJ_P0086928 Bcl7c protein_coding protein_coding MGP_AJ_T0086929.1 MGP_AJ_G0033031.1 mouse_genomes_project 7 128511698 128552804 - MGP_AJ_P0086929 Bcl7c protein_coding nonsense_mediated_decay MGP_AJ_T0086930.1 MGP_AJ_G0033031.1 mouse_genomes_project 7 128549266 128551644 - MGP_AJ_P0086930 Bcl7c protein_coding nonsense_mediated_decay MGP_AJ_T0086931.1 MGP_AJ_G0033031.1 mouse_genomes_project 7 128549328 128552869 - MGP_AJ_P0086931 Bcl7c protein_coding protein_coding MGP_AJ_T0086932.1 MGP_AJ_G0033031.1 mouse_genomes_project 7 128550072 128552417 - Bcl7c protein_coding processed_transcript MGP_AJ_T0081854.1 MGP_AJ_G0031683.1 mouse_genomes_project 7 13928910 13949649 - MGP_AJ_P0081854 Npas1 protein_coding protein_coding MGP_AJ_T0002308.1 MGP_AJ_G0002219.1 mouse_genomes_project 7 128002417 128003665 - TEC TEC MGP_AJ_T0010921.1 MGP_AJ_G0009043.1 mouse_genomes_project 7 128552828 128552904 + Mir762 miRNA miRNA MGP_AJ_T0102876.1 MGP_AJ_G0040616.1 mouse_genomes_project 7 85918655 85919331 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0085660.1 MGP_AJ_G0032708.1 mouse_genomes_project 7 105279919 105280876 - MGP_AJ_P0085660 Olfr668 protein_coding protein_coding MGP_AJ_T0084626.1 MGP_AJ_G0032372.1 mouse_genomes_project 7 79736411 79750374 - MGP_AJ_P0084626 Plin1 protein_coding protein_coding MGP_AJ_T0084627.1 MGP_AJ_G0032372.1 mouse_genomes_project 7 79737935 79749758 - MGP_AJ_P0084627 Plin1 protein_coding protein_coding MGP_AJ_T0084628.1 MGP_AJ_G0032372.1 mouse_genomes_project 7 79737935 79750363 - MGP_AJ_P0084628 Plin1 protein_coding protein_coding MGP_AJ_T0084629.1 MGP_AJ_G0032372.1 mouse_genomes_project 7 79739152 79740060 - MGP_AJ_P0084629 Plin1 protein_coding protein_coding MGP_AJ_T0084630.1 MGP_AJ_G0032372.1 mouse_genomes_project 7 79741870 79747452 - MGP_AJ_P0084630 Plin1 protein_coding protein_coding MGP_AJ_T0084631.1 MGP_AJ_G0032372.1 mouse_genomes_project 7 79744102 79750422 - MGP_AJ_P0084631 Plin1 protein_coding protein_coding MGP_AJ_T0084632.1 MGP_AJ_G0032372.1 mouse_genomes_project 7 79746569 79750490 - MGP_AJ_P0084632 Plin1 protein_coding protein_coding MGP_AJ_T0010905.1 MGP_AJ_G0009027.1 mouse_genomes_project 7 96524519 96524618 + Mir6394 miRNA miRNA MGP_AJ_T0102818.1 MGP_AJ_G0040558.1 mouse_genomes_project 7 41013824 41016449 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0015937.1 MGP_AJ_G0014032.1 mouse_genomes_project 7 128119628 128119970 - processed_pseudogene processed_pseudogene MGP_AJ_T0087499.1 MGP_AJ_G0033170.1 mouse_genomes_project 7 141673768 141674871 + MGP_AJ_P0087499 Olfr541 protein_coding protein_coding MGP_AJ_T0082067.1 MGP_AJ_G0031750.1 mouse_genomes_project 7 17027663 17041336 + MGP_AJ_P0082067 Ercc2 protein_coding protein_coding MGP_AJ_T0082068.1 MGP_AJ_G0031750.1 mouse_genomes_project 7 17027671 17031342 + Ercc2 protein_coding processed_transcript MGP_AJ_T0082069.1 MGP_AJ_G0031750.1 mouse_genomes_project 7 17027684 17041334 + MGP_AJ_P0082069 Ercc2 protein_coding protein_coding MGP_AJ_T0082070.1 MGP_AJ_G0031750.1 mouse_genomes_project 7 17027693 17041336 + MGP_AJ_P0082070 Ercc2 protein_coding protein_coding MGP_AJ_T0082071.1 MGP_AJ_G0031750.1 mouse_genomes_project 7 17027861 17031547 + Ercc2 protein_coding processed_transcript MGP_AJ_T0082072.1 MGP_AJ_G0031750.1 mouse_genomes_project 7 17027922 17040103 + MGP_AJ_P0082072 Ercc2 protein_coding protein_coding MGP_AJ_T0082073.1 MGP_AJ_G0031750.1 mouse_genomes_project 7 17033844 17039322 + Ercc2 protein_coding processed_transcript MGP_AJ_T0082074.1 MGP_AJ_G0031750.1 mouse_genomes_project 7 17036037 17037548 + Ercc2 protein_coding retained_intron MGP_AJ_T0082075.1 MGP_AJ_G0031750.1 mouse_genomes_project 7 17039071 17040428 + Ercc2 protein_coding retained_intron MGP_AJ_T0082076.1 MGP_AJ_G0031750.1 mouse_genomes_project 7 17039302 17039707 + Ercc2 protein_coding retained_intron MGP_AJ_T0015765.1 MGP_AJ_G0013860.1 mouse_genomes_project 7 29432476 29433263 + processed_pseudogene processed_pseudogene MGP_AJ_T0015918.1 MGP_AJ_G0014013.1 mouse_genomes_project 7 115882788 115883118 + processed_pseudogene processed_pseudogene MGP_AJ_T0084781.1 MGP_AJ_G0032399.1 mouse_genomes_project 7 80953020 80963578 - MGP_AJ_P0084781 Wdr73 protein_coding protein_coding MGP_AJ_T0084782.1 MGP_AJ_G0032399.1 mouse_genomes_project 7 80953021 80963541 - Wdr73 protein_coding retained_intron MGP_AJ_T0084783.1 MGP_AJ_G0032399.1 mouse_genomes_project 7 80953021 80963541 - Wdr73 protein_coding retained_intron MGP_AJ_T0084784.1 MGP_AJ_G0032399.1 mouse_genomes_project 7 80953562 80963543 - Wdr73 protein_coding retained_intron MGP_AJ_T0084785.1 MGP_AJ_G0032399.1 mouse_genomes_project 7 80955297 80963528 - Wdr73 protein_coding processed_transcript MGP_AJ_T0084786.1 MGP_AJ_G0032399.1 mouse_genomes_project 7 80955361 80963529 - MGP_AJ_P0084786 Wdr73 protein_coding protein_coding MGP_AJ_T0084787.1 MGP_AJ_G0032399.1 mouse_genomes_project 7 80955362 80963028 - Wdr73 protein_coding processed_transcript MGP_AJ_T0084788.1 MGP_AJ_G0032399.1 mouse_genomes_project 7 80956001 80962813 - Wdr73 protein_coding processed_transcript MGP_AJ_T0084789.1 MGP_AJ_G0032399.1 mouse_genomes_project 7 80960245 80963553 - Wdr73 protein_coding processed_transcript MGP_AJ_T0084790.1 MGP_AJ_G0032399.1 mouse_genomes_project 7 80962981 80963541 - Wdr73 protein_coding processed_transcript MGP_AJ_T0102824.1 MGP_AJ_G0040564.1 mouse_genomes_project 7 43159648 43163877 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0086163.1 MGP_AJ_G0032879.1 mouse_genomes_project 7 118866018 118978320 - MGP_AJ_P0086163 Smg1 protein_coding protein_coding MGP_AJ_T0086164.1 MGP_AJ_G0032879.1 mouse_genomes_project 7 118867440 118952011 - MGP_AJ_P0086164 Smg1 protein_coding protein_coding MGP_AJ_T0086165.1 MGP_AJ_G0032879.1 mouse_genomes_project 7 118874800 118875815 - MGP_AJ_P0086165 Smg1 protein_coding protein_coding MGP_AJ_T0086166.1 MGP_AJ_G0032879.1 mouse_genomes_project 7 118931668 118978320 - Smg1 protein_coding retained_intron MGP_AJ_T0086167.1 MGP_AJ_G0032879.1 mouse_genomes_project 7 118936525 118978310 - MGP_AJ_P0086167 Smg1 protein_coding protein_coding MGP_AJ_T0086168.1 MGP_AJ_G0032879.1 mouse_genomes_project 7 118939098 118978032 - Smg1 protein_coding retained_intron MGP_AJ_T0086238.1 MGP_AJ_G0032900.1 mouse_genomes_project 7 120489552 120515607 + MGP_AJ_P0086238 Acsm3 protein_coding protein_coding MGP_AJ_T0086239.1 MGP_AJ_G0032900.1 mouse_genomes_project 7 120489552 120515611 + MGP_AJ_P0086239 Acsm3 protein_coding protein_coding MGP_AJ_T0086240.1 MGP_AJ_G0032900.1 mouse_genomes_project 7 120489553 120515609 + MGP_AJ_P0086240 Acsm3 protein_coding protein_coding MGP_AJ_T0086241.1 MGP_AJ_G0032900.1 mouse_genomes_project 7 120489553 120518231 + MGP_AJ_P0086241 Acsm3 protein_coding protein_coding MGP_AJ_T0086242.1 MGP_AJ_G0032900.1 mouse_genomes_project 7 120497125 120515614 + MGP_AJ_P0086242 Acsm3 protein_coding protein_coding MGP_AJ_T0086245.1 MGP_AJ_G0032900.1 mouse_genomes_project 7 120505342 120509977 + Acsm3 protein_coding retained_intron MGP_AJ_T0086246.1 MGP_AJ_G0032900.1 mouse_genomes_project 7 120507853 120511736 + Acsm3 protein_coding retained_intron MGP_AJ_T0086247.1 MGP_AJ_G0032900.1 mouse_genomes_project 7 120511458 120511777 + Acsm3 protein_coding retained_intron MGP_AJ_T0081506.1 MGP_AJ_G0031537.1 mouse_genomes_project 7 1733197 1734996 + MGP_AJ_P0081506 Rpl28 protein_coding unknown_likely_coding MGP_AJ_T0081507.1 MGP_AJ_G0031537.1 mouse_genomes_project 7 1733268 1735953 + MGP_AJ_P0081507 Rpl28 protein_coding protein_coding MGP_AJ_T0081508.1 MGP_AJ_G0031537.1 mouse_genomes_project 7 1733384 1735440 + MGP_AJ_P0081508 Rpl28 protein_coding protein_coding MGP_AJ_T0081509.1 MGP_AJ_G0031537.1 mouse_genomes_project 7 1733823 1734251 + Rpl28 protein_coding retained_intron MGP_AJ_T0081510.1 MGP_AJ_G0031537.1 mouse_genomes_project 7 1734019 1735449 + MGP_AJ_P0081510 Rpl28 protein_coding protein_coding MGP_AJ_T0081511.1 MGP_AJ_G0031537.1 mouse_genomes_project 7 1734276 1735449 + Rpl28 protein_coding retained_intron MGP_AJ_T0018397.1 MGP_AJ_G0015658.1 mouse_genomes_project 7 84791454 84870854 + 2610206C17Rik processed_transcript processed_transcript MGP_AJ_T0018398.1 MGP_AJ_G0015658.1 mouse_genomes_project 7 84870007 84870325 + 2610206C17Rik processed_transcript processed_transcript MGP_AJ_T0085869.1 MGP_AJ_G0032820.1 mouse_genomes_project 7 109573959 109582494 + MGP_AJ_P0085869 Eif3f protein_coding protein_coding MGP_AJ_T0085870.1 MGP_AJ_G0032820.1 mouse_genomes_project 7 109577937 109580019 + Eif3f protein_coding retained_intron MGP_AJ_T0085871.1 MGP_AJ_G0032820.1 mouse_genomes_project 7 109579850 109580551 + Eif3f protein_coding retained_intron MGP_AJ_T0082731.1 MGP_AJ_G0031934.1 mouse_genomes_project 7 26886178 26886629 - Mrps12 protein_coding processed_transcript MGP_AJ_T0082732.1 MGP_AJ_G0031934.1 mouse_genomes_project 7 26886178 26888364 - MGP_AJ_P0082732 Mrps12 protein_coding protein_coding MGP_AJ_T0082733.1 MGP_AJ_G0031934.1 mouse_genomes_project 7 26886179 26888414 - MGP_AJ_P0082733 Mrps12 protein_coding protein_coding MGP_AJ_T0082734.1 MGP_AJ_G0031934.1 mouse_genomes_project 7 26886453 26887383 - MGP_AJ_P0082734 Mrps12 protein_coding protein_coding MGP_AJ_T0083230.1 MGP_AJ_G0032039.1 mouse_genomes_project 7 29366532 29376818 - MGP_AJ_P0083230 Scn1b protein_coding protein_coding MGP_AJ_T0005221.1 MGP_AJ_G0004440.1 mouse_genomes_project 7 71991203 71993900 + Gm45107 antisense antisense MGP_AJ_T0087183.1 MGP_AJ_G0033077.1 mouse_genomes_project 7 131718278 131766037 + MGP_AJ_P0087183 Plekha1 protein_coding protein_coding MGP_AJ_T0087184.1 MGP_AJ_G0033077.1 mouse_genomes_project 7 131718407 131747452 + Plekha1 protein_coding retained_intron MGP_AJ_T0087185.1 MGP_AJ_G0033077.1 mouse_genomes_project 7 131718409 131730866 + Plekha1 protein_coding retained_intron MGP_AJ_T0087186.1 MGP_AJ_G0033077.1 mouse_genomes_project 7 131718420 131764793 + MGP_AJ_P0087186 Plekha1 protein_coding protein_coding MGP_AJ_T0087187.1 MGP_AJ_G0033077.1 mouse_genomes_project 7 131718425 131762550 + MGP_AJ_P0087187 Plekha1 protein_coding nonsense_mediated_decay MGP_AJ_T0087188.1 MGP_AJ_G0033077.1 mouse_genomes_project 7 131718432 131766027 + MGP_AJ_P0087188 Plekha1 protein_coding protein_coding MGP_AJ_T0087189.1 MGP_AJ_G0033077.1 mouse_genomes_project 7 131735064 131738233 + Plekha1 protein_coding retained_intron MGP_AJ_T0087190.1 MGP_AJ_G0033077.1 mouse_genomes_project 7 131749702 131758138 + Plekha1 protein_coding retained_intron MGP_AJ_T0087191.1 MGP_AJ_G0033077.1 mouse_genomes_project 7 131753245 131762405 + Plekha1 protein_coding processed_transcript MGP_AJ_T0087192.1 MGP_AJ_G0033077.1 mouse_genomes_project 7 131754956 131761629 + Plekha1 protein_coding retained_intron MGP_AJ_T0087193.1 MGP_AJ_G0033077.1 mouse_genomes_project 7 131757615 131763888 + MGP_AJ_P0087193 Plekha1 protein_coding protein_coding MGP_AJ_T0087194.1 MGP_AJ_G0033077.1 mouse_genomes_project 7 131758015 131763626 + Plekha1 protein_coding retained_intron MGP_AJ_T0083126.1 MGP_AJ_G0032023.1 mouse_genomes_project 7 29022173 29027597 - MGP_AJ_P0083126 Ffar2 protein_coding protein_coding MGP_AJ_T0083127.1 MGP_AJ_G0032023.1 mouse_genomes_project 7 29022182 29024961 - MGP_AJ_P0083127 Ffar2 protein_coding protein_coding MGP_AJ_T0083128.1 MGP_AJ_G0032023.1 mouse_genomes_project 7 29022937 29025470 - MGP_AJ_P0083128 Ffar2 protein_coding protein_coding MGP_AJ_T0083129.1 MGP_AJ_G0032023.1 mouse_genomes_project 7 29023389 29024960 - MGP_AJ_P0083129 Ffar2 protein_coding protein_coding MGP_AJ_T0083130.1 MGP_AJ_G0032023.1 mouse_genomes_project 7 29023507 29024799 - MGP_AJ_P0083130 Ffar2 protein_coding protein_coding MGP_AJ_T0083131.1 MGP_AJ_G0032023.1 mouse_genomes_project 7 29023534 29024969 - MGP_AJ_P0083131 Ffar2 protein_coding protein_coding MGP_AJ_T0100146.1 MGP_AJ_G0038112.1 mouse_genomes_project 7 39593140 39593221 + Gm25784 snRNA snRNA MGP_AJ_T0083696.1 MGP_AJ_G0032151.1 mouse_genomes_project 7 43965676 44024789 - MGP_AJ_P0083696 Myh14 protein_coding protein_coding MGP_AJ_T0083697.1 MGP_AJ_G0032151.1 mouse_genomes_project 7 43965676 44024789 - MGP_AJ_P0083697 Myh14 protein_coding protein_coding MGP_AJ_T0085236.1 MGP_AJ_G0032532.1 mouse_genomes_project 7 100105732 100135770 - MGP_AJ_P0085236 Spcs2 protein_coding protein_coding MGP_AJ_T0081990.1 MGP_AJ_G0031731.1 mouse_genomes_project 7 16695242 16714707 + MGP_AJ_P0081990 Rsph6a protein_coding protein_coding MGP_AJ_T0081991.1 MGP_AJ_G0031731.1 mouse_genomes_project 7 16695251 16714707 + MGP_AJ_P0081991 Rsph6a protein_coding protein_coding MGP_AJ_T0081992.1 MGP_AJ_G0031731.1 mouse_genomes_project 7 16697909 16706024 + Rsph6a protein_coding processed_transcript MGP_AJ_T0084734.1 MGP_AJ_G0032393.1 mouse_genomes_project 7 80420949 80431522 - MGP_AJ_P0084734 Fes protein_coding nonsense_mediated_decay MGP_AJ_T0084735.1 MGP_AJ_G0032393.1 mouse_genomes_project 7 80420951 80423629 - Fes protein_coding retained_intron MGP_AJ_T0084736.1 MGP_AJ_G0032393.1 mouse_genomes_project 7 80420951 80422823 - MGP_AJ_P0084736 Fes protein_coding protein_coding MGP_AJ_T0084737.1 MGP_AJ_G0032393.1 mouse_genomes_project 7 80420951 80431532 - MGP_AJ_P0084737 Fes protein_coding protein_coding MGP_AJ_T0084738.1 MGP_AJ_G0032393.1 mouse_genomes_project 7 80420956 80431457 - MGP_AJ_P0084738 Fes protein_coding nonsense_mediated_decay MGP_AJ_T0084739.1 MGP_AJ_G0032393.1 mouse_genomes_project 7 80420957 80431527 - MGP_AJ_P0084739 Fes protein_coding nonsense_mediated_decay MGP_AJ_T0084740.1 MGP_AJ_G0032393.1 mouse_genomes_project 7 80420966 80431007 - MGP_AJ_P0084740 Fes protein_coding protein_coding MGP_AJ_T0084741.1 MGP_AJ_G0032393.1 mouse_genomes_project 7 80427401 80431481 - MGP_AJ_P0084741 Fes protein_coding nonsense_mediated_decay MGP_AJ_T0084742.1 MGP_AJ_G0032393.1 mouse_genomes_project 7 80430501 80431467 - MGP_AJ_P0084742 Fes protein_coding protein_coding MGP_AJ_T0084743.1 MGP_AJ_G0032393.1 mouse_genomes_project 7 80430627 80431480 - Fes protein_coding retained_intron MGP_AJ_T0084809.1 MGP_AJ_G0032403.1 mouse_genomes_project 7 81130994 81178752 + MGP_AJ_P0084809 Alpk3 protein_coding protein_coding MGP_AJ_T0084810.1 MGP_AJ_G0032403.1 mouse_genomes_project 7 81131024 81177471 + MGP_AJ_P0084810 Alpk3 protein_coding unknown_likely_coding MGP_AJ_T0084811.1 MGP_AJ_G0032403.1 mouse_genomes_project 7 81167927 81168790 + Alpk3 protein_coding retained_intron MGP_AJ_T0081262.1 MGP_AJ_G0031492.1 mouse_genomes_project 7 240691 276281 + MGP_AJ_P0081262 Cacng7 protein_coding protein_coding MGP_AJ_T0081263.1 MGP_AJ_G0031492.1 mouse_genomes_project 7 245888 274959 + Cacng7 protein_coding retained_intron MGP_AJ_T0010865.1 MGP_AJ_G0008987.1 mouse_genomes_project 7 44499557 44499631 - Mir5121 miRNA miRNA MGP_AJ_T0087480.1 MGP_AJ_G0033153.1 mouse_genomes_project 7 141167604 141180289 + MGP_AJ_P0087480 Cd163l1 protein_coding protein_coding MGP_AJ_T0098809.1 MGP_AJ_G0036793.1 mouse_genomes_project 7 3722755 3722849 + Gm27675 sRNA sRNA MGP_AJ_T0015739.1 MGP_AJ_G0013834.1 mouse_genomes_project 7 22099968 22100407 + processed_pseudogene processed_pseudogene MGP_AJ_T0082134.1 MGP_AJ_G0031769.1 mouse_genomes_project 7 17350985 17364761 - MGP_AJ_P0082134 Tomm40 protein_coding protein_coding MGP_AJ_T0082135.1 MGP_AJ_G0031769.1 mouse_genomes_project 7 17351001 17364748 - MGP_AJ_P0082135 Tomm40 protein_coding protein_coding MGP_AJ_T0082136.1 MGP_AJ_G0031769.1 mouse_genomes_project 7 17351493 17360288 - Tomm40 protein_coding retained_intron MGP_AJ_T0082137.1 MGP_AJ_G0031769.1 mouse_genomes_project 7 17352337 17352813 - MGP_AJ_P0082137 Tomm40 protein_coding protein_coding MGP_AJ_T0082138.1 MGP_AJ_G0031769.1 mouse_genomes_project 7 17360736 17364751 - Tomm40 protein_coding retained_intron MGP_AJ_T0010932.1 MGP_AJ_G0009054.1 mouse_genomes_project 7 142624444 142624535 + Mir7063 miRNA miRNA MGP_AJ_T0100152.1 MGP_AJ_G0038118.1 mouse_genomes_project 7 55647970 55648032 + Gm26482 snRNA snRNA MGP_AJ_T0102833.1 MGP_AJ_G0040573.1 mouse_genomes_project 7 43460141 43462495 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0002197.1 MGP_AJ_G0002109.1 mouse_genomes_project 7 16502615 16503852 + TEC TEC MGP_AJ_T0102911.1 MGP_AJ_G0040651.1 mouse_genomes_project 7 106248442 107205512 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0082634.1 MGP_AJ_G0031903.1 mouse_genomes_project 7 25885002 25903416 + MGP_AJ_P0082634 protein_coding protein_coding MGP_AJ_T0085427.1 MGP_AJ_G0032569.1 mouse_genomes_project 7 102248680 102256542 + MGP_AJ_P0085427 Lamtor1 protein_coding protein_coding MGP_AJ_T0085428.1 MGP_AJ_G0032569.1 mouse_genomes_project 7 102248754 102271303 + MGP_AJ_P0085428 Lamtor1 protein_coding protein_coding MGP_AJ_T0081966.1 MGP_AJ_G0031723.1 mouse_genomes_project 7 16527239 16527752 - Ccdc61 protein_coding retained_intron MGP_AJ_T0081967.1 MGP_AJ_G0031723.1 mouse_genomes_project 7 16527239 16547178 - MGP_AJ_P0081967 Ccdc61 protein_coding protein_coding MGP_AJ_T0081968.1 MGP_AJ_G0031723.1 mouse_genomes_project 7 16527240 16528903 - MGP_AJ_P0081968 Ccdc61 protein_coding nonsense_mediated_decay MGP_AJ_T0081969.1 MGP_AJ_G0031723.1 mouse_genomes_project 7 16527240 16547161 - MGP_AJ_P0081969 Ccdc61 protein_coding nonsense_mediated_decay MGP_AJ_T0081970.1 MGP_AJ_G0031723.1 mouse_genomes_project 7 16527361 16530806 - MGP_AJ_P0081970 Ccdc61 protein_coding protein_coding MGP_AJ_T0081971.1 MGP_AJ_G0031723.1 mouse_genomes_project 7 16528003 16528709 - Ccdc61 protein_coding retained_intron MGP_AJ_T0081972.1 MGP_AJ_G0031723.1 mouse_genomes_project 7 16536403 16547161 - MGP_AJ_P0081972 Ccdc61 protein_coding protein_coding MGP_AJ_T0081973.1 MGP_AJ_G0031723.1 mouse_genomes_project 7 16537836 16547152 - MGP_AJ_P0081973 Ccdc61 protein_coding protein_coding MGP_AJ_T0083769.1 MGP_AJ_G0032167.1 mouse_genomes_project 7 44327981 44343004 - MGP_AJ_P0083769 Cpt1c protein_coding protein_coding MGP_AJ_T0084030.1 MGP_AJ_G0032241.1 mouse_genomes_project 7 45645335 45717572 + MGP_AJ_P0084030 Otog protein_coding protein_coding MGP_AJ_T0083067.1 MGP_AJ_G0032007.1 mouse_genomes_project 7 28770950 28773480 + MGP_AJ_P0083067 Igflr1 protein_coding protein_coding MGP_AJ_T0083068.1 MGP_AJ_G0032007.1 mouse_genomes_project 7 28771597 28773477 + MGP_AJ_P0083068 Igflr1 protein_coding protein_coding MGP_AJ_T0084458.1 MGP_AJ_G0032343.1 mouse_genomes_project 7 68594854 68607052 - MGP_AJ_P0084458 Arrdc4 protein_coding protein_coding MGP_AJ_T0084459.1 MGP_AJ_G0032343.1 mouse_genomes_project 7 68599321 68602717 - Arrdc4 protein_coding retained_intron MGP_AJ_T0084460.1 MGP_AJ_G0032343.1 mouse_genomes_project 7 68599413 68606999 - MGP_AJ_P0084460 Arrdc4 protein_coding protein_coding MGP_AJ_T0084719.1 MGP_AJ_G0032391.1 mouse_genomes_project 7 80386868 80389095 + MGP_AJ_P0084719 Hddc3 protein_coding protein_coding MGP_AJ_T0084720.1 MGP_AJ_G0032391.1 mouse_genomes_project 7 80386880 80387744 + MGP_AJ_P0084720 Hddc3 protein_coding protein_coding MGP_AJ_T0084721.1 MGP_AJ_G0032391.1 mouse_genomes_project 7 80387330 80388146 + MGP_AJ_P0084721 Hddc3 protein_coding nonsense_mediated_decay MGP_AJ_T0084722.1 MGP_AJ_G0032391.1 mouse_genomes_project 7 80387543 80393721 + MGP_AJ_P0084722 Hddc3 protein_coding protein_coding MGP_AJ_T0086400.1 MGP_AJ_G0032941.1 mouse_genomes_project 7 123785490 123796221 + MGP_AJ_P0086400 Rbbp6 protein_coding protein_coding MGP_AJ_T0086401.1 MGP_AJ_G0032941.1 mouse_genomes_project 7 123790776 123823836 + MGP_AJ_P0086401 Rbbp6 protein_coding protein_coding MGP_AJ_T0086402.1 MGP_AJ_G0032941.1 mouse_genomes_project 7 123790912 123804644 + MGP_AJ_P0086402 Rbbp6 protein_coding protein_coding MGP_AJ_T0086403.1 MGP_AJ_G0032941.1 mouse_genomes_project 7 123791130 123823836 + MGP_AJ_P0086403 Rbbp6 protein_coding protein_coding MGP_AJ_T0086404.1 MGP_AJ_G0032941.1 mouse_genomes_project 7 123795852 123798974 + Rbbp6 protein_coding retained_intron MGP_AJ_T0086405.1 MGP_AJ_G0032941.1 mouse_genomes_project 7 123796070 123803767 + Rbbp6 protein_coding retained_intron MGP_AJ_T0086406.1 MGP_AJ_G0032941.1 mouse_genomes_project 7 123802715 123823838 + MGP_AJ_P0086406 Rbbp6 protein_coding protein_coding MGP_AJ_T0086407.1 MGP_AJ_G0032941.1 mouse_genomes_project 7 123802753 123805954 + Rbbp6 protein_coding retained_intron MGP_AJ_T0086408.1 MGP_AJ_G0032941.1 mouse_genomes_project 7 123810497 123812880 + Rbbp6 protein_coding retained_intron MGP_AJ_T0087391.1 MGP_AJ_G0033130.1 mouse_genomes_project 7 140148550 140153840 + MGP_AJ_P0087391 Lrrc27 protein_coding protein_coding MGP_AJ_T0087392.1 MGP_AJ_G0033130.1 mouse_genomes_project 7 140148811 140164455 + MGP_AJ_P0087392 Lrrc27 protein_coding protein_coding MGP_AJ_T0087393.1 MGP_AJ_G0033130.1 mouse_genomes_project 7 140148904 140178359 + MGP_AJ_P0087393 Lrrc27 protein_coding unknown_likely_coding MGP_AJ_T0087394.1 MGP_AJ_G0033130.1 mouse_genomes_project 7 140150255 140156897 + MGP_AJ_P0087394 Lrrc27 protein_coding protein_coding MGP_AJ_T0087395.1 MGP_AJ_G0033130.1 mouse_genomes_project 7 140156148 140161594 + Lrrc27 protein_coding processed_transcript MGP_AJ_T0087396.1 MGP_AJ_G0033130.1 mouse_genomes_project 7 140156412 140161687 + Lrrc27 protein_coding retained_intron MGP_AJ_T0087397.1 MGP_AJ_G0033130.1 mouse_genomes_project 7 140169353 140178553 + Lrrc27 protein_coding processed_transcript MGP_AJ_T0087398.1 MGP_AJ_G0033130.1 mouse_genomes_project 7 140171296 140178554 + Lrrc27 protein_coding processed_transcript MGP_AJ_T0087399.1 MGP_AJ_G0033130.1 mouse_genomes_project 7 140173849 140178558 + Lrrc27 protein_coding processed_transcript MGP_AJ_T0086368.1 MGP_AJ_G0032934.1 mouse_genomes_project 7 122905894 122932243 - MGP_AJ_P0086368 Palb2 protein_coding protein_coding MGP_AJ_T0086369.1 MGP_AJ_G0032934.1 mouse_genomes_project 7 122905894 122932345 - MGP_AJ_P0086369 Palb2 protein_coding protein_coding MGP_AJ_T0086370.1 MGP_AJ_G0032934.1 mouse_genomes_project 7 122905894 122932308 - MGP_AJ_P0086370 Palb2 protein_coding protein_coding MGP_AJ_T0086371.1 MGP_AJ_G0032934.1 mouse_genomes_project 7 122905897 122910802 - Palb2 protein_coding retained_intron MGP_AJ_T0086372.1 MGP_AJ_G0032934.1 mouse_genomes_project 7 122905899 122923844 - MGP_AJ_P0086372 Palb2 protein_coding nonsense_mediated_decay MGP_AJ_T0086373.1 MGP_AJ_G0032934.1 mouse_genomes_project 7 122910333 122932287 - MGP_AJ_P0086373 Palb2 protein_coding nonsense_mediated_decay MGP_AJ_T0086374.1 MGP_AJ_G0032934.1 mouse_genomes_project 7 122910333 122932316 - MGP_AJ_P0086374 Palb2 protein_coding protein_coding MGP_AJ_T0086375.1 MGP_AJ_G0032934.1 mouse_genomes_project 7 122924980 122932318 - Palb2 protein_coding retained_intron MGP_AJ_T0086376.1 MGP_AJ_G0032934.1 mouse_genomes_project 7 122930239 122932384 - Palb2 protein_coding retained_intron MGP_AJ_T0018335.1 MGP_AJ_G0015635.1 mouse_genomes_project 7 25456376 25457610 + Gm44924 processed_transcript processed_transcript MGP_AJ_T0082122.1 MGP_AJ_G0031767.1 mouse_genomes_project 7 17339169 17342282 - MGP_AJ_P0082122 Apoc1 protein_coding protein_coding MGP_AJ_T0082123.1 MGP_AJ_G0031767.1 mouse_genomes_project 7 17339169 17342344 - MGP_AJ_P0082123 Apoc1 protein_coding protein_coding MGP_AJ_T0083869.1 MGP_AJ_G0032200.1 mouse_genomes_project 7 44808530 44824773 - MGP_AJ_P0083869 Ruvbl2 protein_coding protein_coding MGP_AJ_T0083870.1 MGP_AJ_G0032200.1 mouse_genomes_project 7 44808576 44821300 - MGP_AJ_P0083870 Ruvbl2 protein_coding protein_coding MGP_AJ_T0083871.1 MGP_AJ_G0032200.1 mouse_genomes_project 7 44811629 44821386 - MGP_AJ_P0083871 Ruvbl2 protein_coding protein_coding MGP_AJ_T0087924.1 MGP_AJ_G0033257.1 mouse_genomes_project 7 144484245 144485242 - MGP_AJ_P0087924 Phlda2 protein_coding protein_coding MGP_AJ_T0083447.1 MGP_AJ_G0032085.1 mouse_genomes_project 7 39611793 39643967 + MGP_AJ_P0083447 Vstm2b protein_coding protein_coding MGP_AJ_T0083448.1 MGP_AJ_G0032085.1 mouse_genomes_project 7 39612742 39643341 + MGP_AJ_P0083448 Vstm2b protein_coding protein_coding MGP_AJ_T0083449.1 MGP_AJ_G0032085.1 mouse_genomes_project 7 39612796 39616246 + MGP_AJ_P0083449 Vstm2b protein_coding protein_coding MGP_AJ_T0083450.1 MGP_AJ_G0032085.1 mouse_genomes_project 7 39613590 39616259 + MGP_AJ_P0083450 Vstm2b protein_coding protein_coding MGP_AJ_T0081628.1 MGP_AJ_G0031596.1 mouse_genomes_project 7 7183576 7210693 - MGP_AJ_P0081628 protein_coding protein_coding MGP_AJ_T0102879.1 MGP_AJ_G0040619.1 mouse_genomes_project 7 86015550 86015858 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0083964.1 MGP_AJ_G0032225.1 mouse_genomes_project 7 45125954 45156407 - MGP_AJ_P0083964 Sult2b1 protein_coding protein_coding MGP_AJ_T0083965.1 MGP_AJ_G0032225.1 mouse_genomes_project 7 45125971 45138454 - MGP_AJ_P0083965 Sult2b1 protein_coding protein_coding MGP_AJ_T0083966.1 MGP_AJ_G0032225.1 mouse_genomes_project 7 45131117 45138454 - MGP_AJ_P0083966 Sult2b1 protein_coding protein_coding MGP_AJ_T0083967.1 MGP_AJ_G0032225.1 mouse_genomes_project 7 45131151 45138717 - Sult2b1 protein_coding processed_transcript MGP_AJ_T0083968.1 MGP_AJ_G0032225.1 mouse_genomes_project 7 45155268 45156325 - Sult2b1 protein_coding processed_transcript MGP_AJ_T0082452.1 MGP_AJ_G0031857.1 mouse_genomes_project 7 23597385 23630042 - MGP_AJ_P0082452 Hnrnpul1 protein_coding protein_coding MGP_AJ_T0082453.1 MGP_AJ_G0031857.1 mouse_genomes_project 7 23612026 23630108 - MGP_AJ_P0082453 Hnrnpul1 protein_coding protein_coding MGP_AJ_T0082454.1 MGP_AJ_G0031857.1 mouse_genomes_project 7 23614707 23616991 - Hnrnpul1 protein_coding retained_intron MGP_AJ_T0082455.1 MGP_AJ_G0031857.1 mouse_genomes_project 7 23617166 23619781 - Hnrnpul1 protein_coding retained_intron MGP_AJ_T0100180.1 MGP_AJ_G0038146.1 mouse_genomes_project 7 121779268 121779371 - Gm25924 snRNA snRNA MGP_AJ_T0082661.1 MGP_AJ_G0031915.1 mouse_genomes_project 7 26404904 26411377 - MGP_AJ_P0082661 protein_coding protein_coding MGP_AJ_T0082662.1 MGP_AJ_G0031915.1 mouse_genomes_project 7 26404904 26411429 - MGP_AJ_P0082662 protein_coding protein_coding MGP_AJ_T0082663.1 MGP_AJ_G0031915.1 mouse_genomes_project 7 26407312 26408435 - MGP_AJ_P0082663 protein_coding protein_coding MGP_AJ_T0085562.1 MGP_AJ_G0032640.1 mouse_genomes_project 7 103957141 103961868 + MGP_AJ_P0085562 Olfr613 protein_coding protein_coding MGP_AJ_T0005272.1 MGP_AJ_G0004475.1 mouse_genomes_project 7 116744444 116745016 + Sox6os antisense antisense MGP_AJ_T0015817.1 MGP_AJ_G0013912.1 mouse_genomes_project 7 42514824 42515089 - processed_pseudogene processed_pseudogene MGP_AJ_T0008940.1 MGP_AJ_G0007216.1 mouse_genomes_project 7 78817124 78819503 + 5330411O13Rik lincRNA lincRNA MGP_AJ_T0101420.1 MGP_AJ_G0039386.1 mouse_genomes_project 7 59564528 59564607 - snoRNA snoRNA MGP_AJ_T0087510.1 MGP_AJ_G0033176.1 mouse_genomes_project 7 141831892 141835106 + MGP_AJ_P0087510 Odf3 protein_coding protein_coding MGP_AJ_T0087511.1 MGP_AJ_G0033176.1 mouse_genomes_project 7 141831910 141835096 + MGP_AJ_P0087511 Odf3 protein_coding protein_coding MGP_AJ_T0087512.1 MGP_AJ_G0033176.1 mouse_genomes_project 7 141831911 141835099 + Odf3 protein_coding retained_intron MGP_AJ_T0102845.1 MGP_AJ_G0040585.1 mouse_genomes_project 7 47632104 47632924 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0008852.1 MGP_AJ_G0007150.1 mouse_genomes_project 7 35630671 35631827 + Gm28075 lincRNA lincRNA MGP_AJ_T0015908.1 MGP_AJ_G0014003.1 mouse_genomes_project 7 105171225 105172278 + processed_pseudogene processed_pseudogene MGP_AJ_T0084388.1 MGP_AJ_G0032330.1 mouse_genomes_project 7 66204271 66224030 + MGP_AJ_P0084388 Gm10974 protein_coding protein_coding MGP_AJ_T0085663.1 MGP_AJ_G0032711.1 mouse_genomes_project 7 105328131 105329308 - MGP_AJ_P0085663 protein_coding protein_coding MGP_AJ_T0099090.1 MGP_AJ_G0037063.1 mouse_genomes_project 7 89560690 89591850 - sense_intronic sense_intronic MGP_AJ_T0081264.1 MGP_AJ_G0031493.1 mouse_genomes_project 7 299264 325521 + MGP_AJ_P0081264 Cacng8 protein_coding protein_coding MGP_AJ_T0081265.1 MGP_AJ_G0031493.1 mouse_genomes_project 7 302696 325478 + MGP_AJ_P0081265 Cacng8 protein_coding protein_coding MGP_AJ_T0081266.1 MGP_AJ_G0031493.1 mouse_genomes_project 7 302997 303532 + MGP_AJ_P0081266 Cacng8 protein_coding protein_coding MGP_AJ_T0008889.1 MGP_AJ_G0007176.1 mouse_genomes_project 7 63914070 63920619 - Gm45054 lincRNA lincRNA MGP_AJ_T0015701.1 MGP_AJ_G0013796.1 mouse_genomes_project 7 2949804 2950251 + processed_pseudogene processed_pseudogene MGP_AJ_T0010844.1 MGP_AJ_G0008966.1 mouse_genomes_project 7 22936273 22936383 - Mir6537 miRNA miRNA MGP_AJ_T0082779.1 MGP_AJ_G0031944.1 mouse_genomes_project 7 27038487 27050426 + MGP_AJ_P0082779 Capn12 protein_coding protein_coding MGP_AJ_T0087142.1 MGP_AJ_G0033072.1 mouse_genomes_project 7 130997242 131108163 - MGP_AJ_P0087142 Fgfr2 protein_coding protein_coding MGP_AJ_T0087143.1 MGP_AJ_G0033072.1 mouse_genomes_project 7 130997242 131108163 - MGP_AJ_P0087143 Fgfr2 protein_coding nonsense_mediated_decay MGP_AJ_T0087144.1 MGP_AJ_G0033072.1 mouse_genomes_project 7 130998339 131002616 - Fgfr2 protein_coding retained_intron MGP_AJ_T0087145.1 MGP_AJ_G0033072.1 mouse_genomes_project 7 130998440 131108181 - MGP_AJ_P0087145 Fgfr2 protein_coding protein_coding MGP_AJ_T0087146.1 MGP_AJ_G0033072.1 mouse_genomes_project 7 130998440 131108109 - MGP_AJ_P0087146 Fgfr2 protein_coding protein_coding MGP_AJ_T0087147.1 MGP_AJ_G0033072.1 mouse_genomes_project 7 130998539 131006646 - Fgfr2 protein_coding retained_intron MGP_AJ_T0087148.1 MGP_AJ_G0033072.1 mouse_genomes_project 7 130998690 131103772 - MGP_AJ_P0087148 Fgfr2 protein_coding protein_coding MGP_AJ_T0087149.1 MGP_AJ_G0033072.1 mouse_genomes_project 7 130998690 131103772 - MGP_AJ_P0087149 Fgfr2 protein_coding protein_coding MGP_AJ_T0087150.1 MGP_AJ_G0033072.1 mouse_genomes_project 7 130998690 131103772 - MGP_AJ_P0087150 Fgfr2 protein_coding protein_coding MGP_AJ_T0087151.1 MGP_AJ_G0033072.1 mouse_genomes_project 7 130998690 131103772 - MGP_AJ_P0087151 Fgfr2 protein_coding protein_coding MGP_AJ_T0087152.1 MGP_AJ_G0033072.1 mouse_genomes_project 7 130998690 131103772 - MGP_AJ_P0087152 Fgfr2 protein_coding protein_coding MGP_AJ_T0087153.1 MGP_AJ_G0033072.1 mouse_genomes_project 7 130998690 131103772 - MGP_AJ_P0087153 Fgfr2 protein_coding protein_coding MGP_AJ_T0087154.1 MGP_AJ_G0033072.1 mouse_genomes_project 7 130998690 131103772 - MGP_AJ_P0087154 Fgfr2 protein_coding protein_coding MGP_AJ_T0087155.1 MGP_AJ_G0033072.1 mouse_genomes_project 7 130998690 131103772 - MGP_AJ_P0087155 Fgfr2 protein_coding protein_coding MGP_AJ_T0087156.1 MGP_AJ_G0033072.1 mouse_genomes_project 7 130998690 131103772 - MGP_AJ_P0087156 Fgfr2 protein_coding protein_coding MGP_AJ_T0087157.1 MGP_AJ_G0033072.1 mouse_genomes_project 7 130998690 131103772 - MGP_AJ_P0087157 Fgfr2 protein_coding protein_coding MGP_AJ_T0087158.1 MGP_AJ_G0033072.1 mouse_genomes_project 7 130998690 131103772 - MGP_AJ_P0087158 Fgfr2 protein_coding protein_coding MGP_AJ_T0087159.1 MGP_AJ_G0033072.1 mouse_genomes_project 7 130998690 131103772 - MGP_AJ_P0087159 Fgfr2 protein_coding protein_coding MGP_AJ_T0087160.1 MGP_AJ_G0033072.1 mouse_genomes_project 7 130998690 131103772 - MGP_AJ_P0087160 Fgfr2 protein_coding protein_coding MGP_AJ_T0087161.1 MGP_AJ_G0033072.1 mouse_genomes_project 7 131004473 131012796 - Fgfr2 protein_coding retained_intron MGP_AJ_T0087162.1 MGP_AJ_G0033072.1 mouse_genomes_project 7 131012511 131020840 - Fgfr2 protein_coding retained_intron MGP_AJ_T0087163.1 MGP_AJ_G0033072.1 mouse_genomes_project 7 131018512 131035004 - Fgfr2 protein_coding retained_intron MGP_AJ_T0087164.1 MGP_AJ_G0033072.1 mouse_genomes_project 7 131022975 131034516 - Fgfr2 protein_coding retained_intron MGP_AJ_T0087165.1 MGP_AJ_G0033072.1 mouse_genomes_project 7 131037961 131069927 - MGP_AJ_P0087165 Fgfr2 protein_coding nonsense_mediated_decay MGP_AJ_T0087166.1 MGP_AJ_G0033072.1 mouse_genomes_project 7 131082968 131105894 - Fgfr2 protein_coding retained_intron MGP_AJ_T0015780.1 MGP_AJ_G0013875.1 mouse_genomes_project 7 32126694 32127162 + processed_pseudogene processed_pseudogene MGP_AJ_T0010915.1 MGP_AJ_G0009037.1 mouse_genomes_project 7 118509179 118509284 + Gm24063 miRNA miRNA MGP_AJ_T0098728.1 MGP_AJ_G0036712.1 mouse_genomes_project 7 97084343 97084436 - Gm25712 rRNA rRNA MGP_AJ_T0005180.1 MGP_AJ_G0004410.1 mouse_genomes_project 7 28719871 28727351 + Arhgap33os antisense antisense MGP_AJ_T0082836.1 MGP_AJ_G0031959.1 mouse_genomes_project 7 27459957 27464060 + MGP_AJ_P0082836 Ppp1r14a protein_coding protein_coding MGP_AJ_T0008806.1 MGP_AJ_G0007108.1 mouse_genomes_project 7 285914 297718 - Gm44257 lincRNA lincRNA MGP_AJ_T0085676.1 MGP_AJ_G0032724.1 mouse_genomes_project 7 105732149 105733225 + MGP_AJ_P0085676 Olfr689 protein_coding protein_coding MGP_AJ_T0015835.1 MGP_AJ_G0013930.1 mouse_genomes_project 7 56740499 56741358 - processed_pseudogene processed_pseudogene MGP_AJ_T0086448.1 MGP_AJ_G0032947.1 mouse_genomes_project 7 124308487 124333536 - MGP_AJ_P0086448 Zkscan2 protein_coding protein_coding MGP_AJ_T0086449.1 MGP_AJ_G0032947.1 mouse_genomes_project 7 124310846 124314032 - Zkscan2 protein_coding retained_intron MGP_AJ_T0086450.1 MGP_AJ_G0032947.1 mouse_genomes_project 7 124313244 124318070 - MGP_AJ_P0086450 Zkscan2 protein_coding protein_coding MGP_AJ_T0086451.1 MGP_AJ_G0032947.1 mouse_genomes_project 7 124327300 124333536 - MGP_AJ_P0086451 Zkscan2 protein_coding protein_coding MGP_AJ_T0083014.1 MGP_AJ_G0032001.1 mouse_genomes_project 7 28727383 28739268 - MGP_AJ_P0083014 Arhgap33 protein_coding protein_coding MGP_AJ_T0084359.1 MGP_AJ_G0032324.1 mouse_genomes_project 7 65702529 65793604 + MGP_AJ_P0084359 Pcsk6 protein_coding protein_coding MGP_AJ_T0084360.1 MGP_AJ_G0032324.1 mouse_genomes_project 7 65702824 65892353 + MGP_AJ_P0084360 Pcsk6 protein_coding protein_coding MGP_AJ_T0084361.1 MGP_AJ_G0032324.1 mouse_genomes_project 7 65702931 65892301 + MGP_AJ_P0084361 Pcsk6 protein_coding protein_coding MGP_AJ_T0084362.1 MGP_AJ_G0032324.1 mouse_genomes_project 7 65703227 65892307 + MGP_AJ_P0084362 Pcsk6 protein_coding protein_coding MGP_AJ_T0084363.1 MGP_AJ_G0032324.1 mouse_genomes_project 7 65793631 65803814 + Pcsk6 protein_coding retained_intron MGP_AJ_T0084364.1 MGP_AJ_G0032324.1 mouse_genomes_project 7 65879378 65885495 + Pcsk6 protein_coding retained_intron MGP_AJ_T0002299.1 MGP_AJ_G0002210.1 mouse_genomes_project 7 123277577 123280325 + TEC TEC MGP_AJ_T0100140.1 MGP_AJ_G0038106.1 mouse_genomes_project 7 17106239 17106378 - Gm23099 snRNA snRNA MGP_AJ_T0087477.1 MGP_AJ_G0033150.1 mouse_genomes_project 7 141111507 141112583 - MGP_AJ_P0087477 Olfr522 protein_coding protein_coding MGP_AJ_T0102906.1 MGP_AJ_G0040646.1 mouse_genomes_project 7 104968484 104969438 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0087420.1 MGP_AJ_G0033135.1 mouse_genomes_project 7 140790639 140834456 + MGP_AJ_P0087420 Adgra1 protein_coding unknown_likely_coding MGP_AJ_T0087421.1 MGP_AJ_G0033135.1 mouse_genomes_project 7 140790645 140834457 + MGP_AJ_P0087421 Adgra1 protein_coding protein_coding MGP_AJ_T0087422.1 MGP_AJ_G0033135.1 mouse_genomes_project 7 140790836 140802087 + Adgra1 protein_coding processed_transcript MGP_AJ_T0087423.1 MGP_AJ_G0033135.1 mouse_genomes_project 7 140791433 140797663 + Adgra1 protein_coding retained_intron MGP_AJ_T0084951.1 MGP_AJ_G0032460.1 mouse_genomes_project 7 86990482 87147782 + MGP_AJ_P0084951 Vmn2r77 protein_coding protein_coding MGP_AJ_T0002250.1 MGP_AJ_G0002162.1 mouse_genomes_project 7 73291790 73293499 + TEC TEC MGP_AJ_T0081282.1 MGP_AJ_G0031498.1 mouse_genomes_project 7 484247 493857 - MGP_AJ_P0081282 Tfpt protein_coding protein_coding MGP_AJ_T0081283.1 MGP_AJ_G0031498.1 mouse_genomes_project 7 484247 493812 - MGP_AJ_P0081283 Tfpt protein_coding protein_coding MGP_AJ_T0081284.1 MGP_AJ_G0031498.1 mouse_genomes_project 7 484258 493014 - MGP_AJ_P0081284 Tfpt protein_coding nonsense_mediated_decay MGP_AJ_T0081285.1 MGP_AJ_G0031498.1 mouse_genomes_project 7 484702 493507 - Tfpt protein_coding processed_transcript MGP_AJ_T0081286.1 MGP_AJ_G0031498.1 mouse_genomes_project 7 484718 493755 - MGP_AJ_P0081286 Tfpt protein_coding protein_coding MGP_AJ_T0081287.1 MGP_AJ_G0031498.1 mouse_genomes_project 7 484897 493787 - MGP_AJ_P0081287 Tfpt protein_coding nonsense_mediated_decay MGP_AJ_T0081288.1 MGP_AJ_G0031498.1 mouse_genomes_project 7 488521 493507 - MGP_AJ_P0081288 Tfpt protein_coding nonsense_mediated_decay MGP_AJ_T0084410.1 MGP_AJ_G0032335.1 mouse_genomes_project 7 66678344 66811276 + Adamts17 protein_coding retained_intron MGP_AJ_T0084411.1 MGP_AJ_G0032335.1 mouse_genomes_project 7 66678344 66871129 + Adamts17 protein_coding retained_intron MGP_AJ_T0084412.1 MGP_AJ_G0032335.1 mouse_genomes_project 7 66678344 66996527 + MGP_AJ_P0084412 Adamts17 protein_coding protein_coding MGP_AJ_T0084413.1 MGP_AJ_G0032335.1 mouse_genomes_project 7 66678422 66996531 + MGP_AJ_P0084413 Adamts17 protein_coding protein_coding MGP_AJ_T0084414.1 MGP_AJ_G0032335.1 mouse_genomes_project 7 66680864 66905182 + Adamts17 protein_coding processed_transcript MGP_AJ_T0084415.1 MGP_AJ_G0032335.1 mouse_genomes_project 7 66689068 66711244 + Adamts17 protein_coding processed_transcript MGP_AJ_T0084416.1 MGP_AJ_G0032335.1 mouse_genomes_project 7 66749411 66811276 + Adamts17 protein_coding processed_transcript MGP_AJ_T0084417.1 MGP_AJ_G0032335.1 mouse_genomes_project 7 66890505 66921298 + MGP_AJ_P0084417 Adamts17 protein_coding protein_coding MGP_AJ_T0085578.1 MGP_AJ_G0032656.1 mouse_genomes_project 7 104251437 104252984 - MGP_AJ_P0085578 protein_coding protein_coding MGP_AJ_T0085579.1 MGP_AJ_G0032656.1 mouse_genomes_project 7 104251438 104252640 - protein_coding retained_intron MGP_AJ_T0085580.1 MGP_AJ_G0032656.1 mouse_genomes_project 7 104252354 104253002 - MGP_AJ_P0085580 protein_coding protein_coding MGP_AJ_T0015896.1 MGP_AJ_G0013991.1 mouse_genomes_project 7 98699004 98699321 - processed_pseudogene processed_pseudogene MGP_AJ_T0085000.1 MGP_AJ_G0032477.1 mouse_genomes_project 7 90316552 90397901 + MGP_AJ_P0085000 Picalm protein_coding protein_coding MGP_AJ_T0085001.1 MGP_AJ_G0032477.1 mouse_genomes_project 7 90316893 90396054 + MGP_AJ_P0085001 Picalm protein_coding unknown_likely_coding MGP_AJ_T0010894.1 MGP_AJ_G0009016.1 mouse_genomes_project 7 64792814 64792892 - Gm25249 miRNA miRNA MGP_AJ_T0087917.1 MGP_AJ_G0033255.1 mouse_genomes_project 7 144441056 144443757 - MGP_AJ_P0087917 Cdkn1c protein_coding protein_coding MGP_AJ_T0087918.1 MGP_AJ_G0033255.1 mouse_genomes_project 7 144441056 144443757 - MGP_AJ_P0087918 Cdkn1c protein_coding protein_coding MGP_AJ_T0085648.1 MGP_AJ_G0032696.1 mouse_genomes_project 7 104894976 104896002 + MGP_AJ_P0085648 Olfr654 protein_coding protein_coding MGP_AJ_T0087726.1 MGP_AJ_G0033217.1 mouse_genomes_project 7 142472525 142490888 + MGP_AJ_P0087726 Tspan4 protein_coding protein_coding MGP_AJ_T0087727.1 MGP_AJ_G0033217.1 mouse_genomes_project 7 142472528 142490901 + MGP_AJ_P0087727 Tspan4 protein_coding protein_coding MGP_AJ_T0087728.1 MGP_AJ_G0033217.1 mouse_genomes_project 7 142472751 142488705 + MGP_AJ_P0087728 Tspan4 protein_coding protein_coding MGP_AJ_T0087729.1 MGP_AJ_G0033217.1 mouse_genomes_project 7 142481310 142492038 + MGP_AJ_P0087729 Tspan4 protein_coding protein_coding MGP_AJ_T0087730.1 MGP_AJ_G0033217.1 mouse_genomes_project 7 142490573 142492045 + Tspan4 protein_coding retained_intron MGP_AJ_T0084380.1 MGP_AJ_G0032328.1 mouse_genomes_project 7 65952140 66017141 + MGP_AJ_P0084380 Chsy1 protein_coding protein_coding MGP_AJ_T0009015.1 MGP_AJ_G0007259.1 mouse_genomes_project 7 125306346 125324141 - Gm15339 lincRNA lincRNA MGP_AJ_T0010876.1 MGP_AJ_G0008998.1 mouse_genomes_project 7 61558559 61558639 - Mir344d-2 miRNA miRNA MGP_AJ_T0101422.1 MGP_AJ_G0039388.1 mouse_genomes_project 7 59690735 59690802 - Snord64 snoRNA snoRNA MGP_AJ_T0100185.1 MGP_AJ_G0038151.1 mouse_genomes_project 7 127388456 127388563 - Gm25579 snRNA snRNA MGP_AJ_T0018428.1 MGP_AJ_G0015675.1 mouse_genomes_project 7 135149668 135152901 - A130023I24Rik processed_transcript sense_intronic MGP_AJ_T0018429.1 MGP_AJ_G0015675.1 mouse_genomes_project 7 135149747 135151514 - A130023I24Rik processed_transcript retained_intron MGP_AJ_T0085907.1 MGP_AJ_G0032830.1 mouse_genomes_project 7 110371941 110376232 - MGP_AJ_P0085907 Ascl3 protein_coding protein_coding MGP_AJ_T0102800.1 MGP_AJ_G0040540.1 mouse_genomes_project 7 23892706 23907383 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0083941.1 MGP_AJ_G0032218.1 mouse_genomes_project 7 45079906 45090534 + MGP_AJ_P0083941 Ntn5 protein_coding protein_coding MGP_AJ_T0083942.1 MGP_AJ_G0032218.1 mouse_genomes_project 7 45080300 45090537 + MGP_AJ_P0083942 Ntn5 protein_coding protein_coding MGP_AJ_T0083943.1 MGP_AJ_G0032218.1 mouse_genomes_project 7 45080313 45090408 + MGP_AJ_P0083943 Ntn5 protein_coding protein_coding MGP_AJ_T0102795.1 MGP_AJ_G0040536.1 mouse_genomes_project 7 21513823 21514713 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0083837.1 MGP_AJ_G0032192.1 mouse_genomes_project 7 44677199 44719125 - MGP_AJ_P0083837 Trpm4 protein_coding protein_coding MGP_AJ_T0082943.1 MGP_AJ_G0031986.1 mouse_genomes_project 7 28451546 28490894 - MGP_AJ_P0082943 Wdr62 protein_coding nonsense_mediated_decay MGP_AJ_T0082944.1 MGP_AJ_G0031986.1 mouse_genomes_project 7 28451546 28490917 - MGP_AJ_P0082944 Wdr62 protein_coding protein_coding MGP_AJ_T0082945.1 MGP_AJ_G0031986.1 mouse_genomes_project 7 28451546 28473875 - MGP_AJ_P0082945 Wdr62 protein_coding protein_coding MGP_AJ_T0082946.1 MGP_AJ_G0031986.1 mouse_genomes_project 7 28451551 28452292 - Wdr62 protein_coding processed_transcript MGP_AJ_T0082947.1 MGP_AJ_G0031986.1 mouse_genomes_project 7 28453105 28453684 - MGP_AJ_P0082947 Wdr62 protein_coding protein_coding MGP_AJ_T0082948.1 MGP_AJ_G0031986.1 mouse_genomes_project 7 28456785 28463199 - Wdr62 protein_coding retained_intron MGP_AJ_T0082949.1 MGP_AJ_G0031986.1 mouse_genomes_project 7 28461163 28461907 - Wdr62 protein_coding retained_intron MGP_AJ_T0084905.1 MGP_AJ_G0032430.1 mouse_genomes_project 7 83868707 83887656 - MGP_AJ_P0084905 Cfap161 protein_coding protein_coding MGP_AJ_T0084906.1 MGP_AJ_G0032430.1 mouse_genomes_project 7 83870227 83887717 - MGP_AJ_P0084906 Cfap161 protein_coding protein_coding MGP_AJ_T0084907.1 MGP_AJ_G0032430.1 mouse_genomes_project 7 83875623 83887008 - MGP_AJ_P0084907 Cfap161 protein_coding protein_coding MGP_AJ_T0083454.1 MGP_AJ_G0032087.1 mouse_genomes_project 7 40208354 40256066 - MGP_AJ_P0083454 Vmn2r57 protein_coding protein_coding MGP_AJ_T0010831.1 MGP_AJ_G0008953.1 mouse_genomes_project 7 1365916 1366012 - Gm24605 miRNA miRNA MGP_AJ_T0015841.1 MGP_AJ_G0013936.1 mouse_genomes_project 7 61414253 61414791 - processed_pseudogene processed_pseudogene MGP_AJ_T0085565.1 MGP_AJ_G0032643.1 mouse_genomes_project 7 103985602 103986676 + MGP_AJ_P0085565 Olfr617 protein_coding protein_coding MGP_AJ_T0082950.1 MGP_AJ_G0031987.1 mouse_genomes_project 7 28490591 28500799 + MGP_AJ_P0082950 protein_coding protein_coding MGP_AJ_T0082420.1 MGP_AJ_G0031851.1 mouse_genomes_project 7 23490495 23492293 - MGP_AJ_P0082420 Bckdha protein_coding protein_coding MGP_AJ_T0082421.1 MGP_AJ_G0031851.1 mouse_genomes_project 7 23490495 23530236 - MGP_AJ_P0082421 Bckdha protein_coding protein_coding MGP_AJ_T0085655.1 MGP_AJ_G0032703.1 mouse_genomes_project 7 105216381 105219713 + MGP_AJ_P0085655 protein_coding protein_coding MGP_AJ_T0082203.1 MGP_AJ_G0031799.1 mouse_genomes_project 7 21988657 22010297 - MGP_AJ_P0082203 Zfp109 protein_coding protein_coding MGP_AJ_T0002294.1 MGP_AJ_G0002205.1 mouse_genomes_project 7 122894208 122897104 + TEC TEC MGP_AJ_T0087949.1 MGP_AJ_G0033264.1 mouse_genomes_project 7 144760641 144763924 - MGP_AJ_P0087949 Mrgprg protein_coding protein_coding MGP_AJ_T0010892.1 MGP_AJ_G0009014.1 mouse_genomes_project 7 64075869 64075975 + Mir211 miRNA miRNA MGP_AJ_T0002242.1 MGP_AJ_G0002154.1 mouse_genomes_project 7 64083190 64083339 + TEC TEC MGP_AJ_T0008986.1 MGP_AJ_G0007243.1 mouse_genomes_project 7 100729091 100757141 - Gm10603 lincRNA lincRNA MGP_AJ_T0008987.1 MGP_AJ_G0007243.1 mouse_genomes_project 7 100741735 100749496 - Gm10603 lincRNA lincRNA MGP_AJ_T0008988.1 MGP_AJ_G0007243.1 mouse_genomes_project 7 100745871 100757146 - Gm10603 lincRNA lincRNA MGP_AJ_T0084238.1 MGP_AJ_G0032297.1 mouse_genomes_project 7 56654315 57322742 - MGP_AJ_P0084238 Gabrg3 protein_coding protein_coding MGP_AJ_T0084239.1 MGP_AJ_G0032297.1 mouse_genomes_project 7 57116475 57322425 - MGP_AJ_P0084239 Gabrg3 protein_coding protein_coding MGP_AJ_T0084240.1 MGP_AJ_G0032297.1 mouse_genomes_project 7 57257908 57322742 - Gabrg3 protein_coding retained_intron MGP_AJ_T0011688.1 MGP_AJ_G0009810.1 mouse_genomes_project 7 75170527 75170850 + Gm24858 misc_RNA misc_RNA MGP_AJ_T0086021.1 MGP_AJ_G0032854.1 mouse_genomes_project 7 113360023 113588083 + MGP_AJ_P0086021 Tead1 protein_coding protein_coding MGP_AJ_T0086022.1 MGP_AJ_G0032854.1 mouse_genomes_project 7 113360060 113581311 + MGP_AJ_P0086022 Tead1 protein_coding protein_coding MGP_AJ_T0086023.1 MGP_AJ_G0032854.1 mouse_genomes_project 7 113360213 113523580 + Tead1 protein_coding retained_intron MGP_AJ_T0086024.1 MGP_AJ_G0032854.1 mouse_genomes_project 7 113422372 113579981 + MGP_AJ_P0086024 Tead1 protein_coding protein_coding MGP_AJ_T0086025.1 MGP_AJ_G0032854.1 mouse_genomes_project 7 113436686 113579981 + MGP_AJ_P0086025 Tead1 protein_coding protein_coding MGP_AJ_T0086026.1 MGP_AJ_G0032854.1 mouse_genomes_project 7 113440145 113488545 + Tead1 protein_coding processed_transcript MGP_AJ_T0086027.1 MGP_AJ_G0032854.1 mouse_genomes_project 7 113440196 113579981 + MGP_AJ_P0086027 Tead1 protein_coding protein_coding MGP_AJ_T0086028.1 MGP_AJ_G0032854.1 mouse_genomes_project 7 113440241 113579981 + MGP_AJ_P0086028 Tead1 protein_coding protein_coding MGP_AJ_T0086029.1 MGP_AJ_G0032854.1 mouse_genomes_project 7 113440241 113579981 + MGP_AJ_P0086029 Tead1 protein_coding protein_coding MGP_AJ_T0086030.1 MGP_AJ_G0032854.1 mouse_genomes_project 7 113440241 113579981 + MGP_AJ_P0086030 Tead1 protein_coding protein_coding MGP_AJ_T0086031.1 MGP_AJ_G0032854.1 mouse_genomes_project 7 113440294 113542659 + MGP_AJ_P0086031 Tead1 protein_coding protein_coding MGP_AJ_T0086032.1 MGP_AJ_G0032854.1 mouse_genomes_project 7 113440304 113523559 + Tead1 protein_coding retained_intron MGP_AJ_T0011678.1 MGP_AJ_G0009800.1 mouse_genomes_project 7 10597297 10597577 + Gm24909 misc_RNA misc_RNA MGP_AJ_T0085809.1 MGP_AJ_G0032768.1 mouse_genomes_project 7 107659641 107660616 + MGP_AJ_P0085809 Olfr713 protein_coding protein_coding MGP_AJ_T0018440.1 MGP_AJ_G0015681.1 mouse_genomes_project 7 144003957 144035531 - R74862 processed_transcript processed_transcript MGP_AJ_T0018441.1 MGP_AJ_G0015681.1 mouse_genomes_project 7 144014780 144035800 - R74862 processed_transcript processed_transcript MGP_AJ_T0018442.1 MGP_AJ_G0015681.1 mouse_genomes_project 7 144015443 144035791 - R74862 processed_transcript processed_transcript MGP_AJ_T0083006.1 MGP_AJ_G0032000.1 mouse_genomes_project 7 28697206 28718146 + MGP_AJ_P0083006 Prodh2 protein_coding protein_coding MGP_AJ_T0083007.1 MGP_AJ_G0032000.1 mouse_genomes_project 7 28697242 28713364 + Prodh2 protein_coding processed_transcript MGP_AJ_T0083008.1 MGP_AJ_G0032000.1 mouse_genomes_project 7 28697242 28711171 + MGP_AJ_P0083008 Prodh2 protein_coding protein_coding MGP_AJ_T0083009.1 MGP_AJ_G0032000.1 mouse_genomes_project 7 28697243 28697872 + Prodh2 protein_coding retained_intron MGP_AJ_T0083010.1 MGP_AJ_G0032000.1 mouse_genomes_project 7 28697243 28711399 + MGP_AJ_P0083010 Prodh2 protein_coding protein_coding MGP_AJ_T0083011.1 MGP_AJ_G0032000.1 mouse_genomes_project 7 28697265 28711260 + MGP_AJ_P0083011 Prodh2 protein_coding nonsense_mediated_decay MGP_AJ_T0083012.1 MGP_AJ_G0032000.1 mouse_genomes_project 7 28697364 28711467 + MGP_AJ_P0083012 Prodh2 protein_coding protein_coding MGP_AJ_T0083013.1 MGP_AJ_G0032000.1 mouse_genomes_project 7 28711498 28717782 + MGP_AJ_P0083013 Prodh2 protein_coding protein_coding MGP_AJ_T0087353.1 MGP_AJ_G0033121.1 mouse_genomes_project 7 138329299 138364903 - 9430038I01Rik protein_coding processed_transcript MGP_AJ_T0087354.1 MGP_AJ_G0033121.1 mouse_genomes_project 7 138329299 138364909 - MGP_AJ_P0087354 9430038I01Rik protein_coding protein_coding MGP_AJ_T0087355.1 MGP_AJ_G0033121.1 mouse_genomes_project 7 138329862 138364882 - MGP_AJ_P0087355 9430038I01Rik protein_coding protein_coding MGP_AJ_T0087356.1 MGP_AJ_G0033121.1 mouse_genomes_project 7 138336648 138364903 - 9430038I01Rik protein_coding retained_intron MGP_AJ_T0087357.1 MGP_AJ_G0033121.1 mouse_genomes_project 7 138336680 138364879 - MGP_AJ_P0087357 9430038I01Rik protein_coding protein_coding MGP_AJ_T0086316.1 MGP_AJ_G0032918.1 mouse_genomes_project 7 121668665 121697619 + MGP_AJ_P0086316 Polr3e protein_coding protein_coding MGP_AJ_T0102848.1 MGP_AJ_G0040588.1 mouse_genomes_project 7 47841711 47842962 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0086743.1 MGP_AJ_G0032993.1 mouse_genomes_project 7 127778226 127798226 + MGP_AJ_P0086743 Sez6l2 protein_coding protein_coding MGP_AJ_T0086744.1 MGP_AJ_G0032993.1 mouse_genomes_project 7 127778247 127785925 + MGP_AJ_P0086744 Sez6l2 protein_coding protein_coding MGP_AJ_T0086745.1 MGP_AJ_G0032993.1 mouse_genomes_project 7 127778392 127798216 + MGP_AJ_P0086745 Sez6l2 protein_coding protein_coding MGP_AJ_T0086746.1 MGP_AJ_G0032993.1 mouse_genomes_project 7 127778629 127797890 + MGP_AJ_P0086746 Sez6l2 protein_coding protein_coding MGP_AJ_T0086747.1 MGP_AJ_G0032993.1 mouse_genomes_project 7 127781510 127787091 + MGP_AJ_P0086747 Sez6l2 protein_coding protein_coding MGP_AJ_T0086748.1 MGP_AJ_G0032993.1 mouse_genomes_project 7 127795363 127797890 + Sez6l2 protein_coding retained_intron MGP_AJ_T0086749.1 MGP_AJ_G0032993.1 mouse_genomes_project 7 127795589 127798224 + MGP_AJ_P0086749 Sez6l2 protein_coding nonsense_mediated_decay MGP_AJ_T0081774.1 MGP_AJ_G0031658.1 mouse_genomes_project 7 11718697 11746110 - MGP_AJ_P0081774 Sult2a7 protein_coding unknown_likely_coding MGP_AJ_T0081775.1 MGP_AJ_G0031658.1 mouse_genomes_project 7 11718814 11747112 - MGP_AJ_P0081775 Sult2a7 protein_coding protein_coding MGP_AJ_T0008953.1 MGP_AJ_G0007222.1 mouse_genomes_project 7 79598484 79604432 - Gm45169 lincRNA lincRNA MGP_AJ_T0082626.1 MGP_AJ_G0031902.1 mouse_genomes_project 7 25762707 25788783 + MGP_AJ_P0082626 Zfp60 protein_coding protein_coding MGP_AJ_T0082627.1 MGP_AJ_G0031902.1 mouse_genomes_project 7 25762729 25777435 + Zfp60 protein_coding retained_intron MGP_AJ_T0082628.1 MGP_AJ_G0031902.1 mouse_genomes_project 7 25762750 25783307 + MGP_AJ_P0082628 Zfp60 protein_coding protein_coding MGP_AJ_T0082629.1 MGP_AJ_G0031902.1 mouse_genomes_project 7 25762761 25783630 + MGP_AJ_P0082629 Zfp60 protein_coding nonsense_mediated_decay MGP_AJ_T0082630.1 MGP_AJ_G0031902.1 mouse_genomes_project 7 25762829 25785545 + MGP_AJ_P0082630 Zfp60 protein_coding protein_coding MGP_AJ_T0082631.1 MGP_AJ_G0031902.1 mouse_genomes_project 7 25773415 25773800 + Zfp60 protein_coding retained_intron MGP_AJ_T0082632.1 MGP_AJ_G0031902.1 mouse_genomes_project 7 25773415 25785107 + MGP_AJ_P0082632 Zfp60 protein_coding protein_coding MGP_AJ_T0101436.1 MGP_AJ_G0039402.1 mouse_genomes_project 7 99912185 99912316 - Gm25409 snoRNA snoRNA MGP_AJ_T0101429.1 MGP_AJ_G0039395.1 mouse_genomes_project 7 83092511 83092643 + Gm22934 snoRNA snoRNA MGP_AJ_T0015799.1 MGP_AJ_G0013894.1 mouse_genomes_project 7 40127567 40127798 - processed_pseudogene processed_pseudogene MGP_AJ_T0084946.1 MGP_AJ_G0032456.1 mouse_genomes_project 7 86856494 86857505 + MGP_AJ_P0084946 Olfr293 protein_coding protein_coding MGP_AJ_T0083810.1 MGP_AJ_G0032189.1 mouse_genomes_project 7 44590523 44608050 + MGP_AJ_P0083810 Tead2 protein_coding protein_coding MGP_AJ_T0083811.1 MGP_AJ_G0032189.1 mouse_genomes_project 7 44590561 44595691 + Tead2 protein_coding retained_intron MGP_AJ_T0083812.1 MGP_AJ_G0032189.1 mouse_genomes_project 7 44590580 44592977 + Tead2 protein_coding retained_intron MGP_AJ_T0083813.1 MGP_AJ_G0032189.1 mouse_genomes_project 7 44590593 44600552 + MGP_AJ_P0083813 Tead2 protein_coding protein_coding MGP_AJ_T0083814.1 MGP_AJ_G0032189.1 mouse_genomes_project 7 44590622 44608050 + MGP_AJ_P0083814 Tead2 protein_coding protein_coding MGP_AJ_T0083815.1 MGP_AJ_G0032189.1 mouse_genomes_project 7 44591443 44593940 + MGP_AJ_P0083815 Tead2 protein_coding protein_coding MGP_AJ_T0083816.1 MGP_AJ_G0032189.1 mouse_genomes_project 7 44591981 44595744 + Tead2 protein_coding retained_intron MGP_AJ_T0083817.1 MGP_AJ_G0032189.1 mouse_genomes_project 7 44591981 44608065 + MGP_AJ_P0083817 Tead2 protein_coding protein_coding MGP_AJ_T0083818.1 MGP_AJ_G0032189.1 mouse_genomes_project 7 44592809 44598513 + Tead2 protein_coding processed_transcript MGP_AJ_T0083819.1 MGP_AJ_G0032189.1 mouse_genomes_project 7 44594674 44595472 + Tead2 protein_coding retained_intron MGP_AJ_T0083820.1 MGP_AJ_G0032189.1 mouse_genomes_project 7 44595212 44595967 + Tead2 protein_coding processed_transcript MGP_AJ_T0083821.1 MGP_AJ_G0032189.1 mouse_genomes_project 7 44606578 44607517 + Tead2 protein_coding processed_transcript MGP_AJ_T0102802.1 MGP_AJ_G0040542.1 mouse_genomes_project 7 29136582 29137055 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0083105.1 MGP_AJ_G0032020.1 mouse_genomes_project 7 28934291 28958846 + protein_coding processed_transcript MGP_AJ_T0083106.1 MGP_AJ_G0032020.1 mouse_genomes_project 7 28953365 28958854 + MGP_AJ_P0083106 protein_coding protein_coding MGP_AJ_T0083107.1 MGP_AJ_G0032020.1 mouse_genomes_project 7 28953369 28958854 + MGP_AJ_P0083107 protein_coding protein_coding MGP_AJ_T0083108.1 MGP_AJ_G0032020.1 mouse_genomes_project 7 28953453 28958854 + MGP_AJ_P0083108 protein_coding protein_coding MGP_AJ_T0083109.1 MGP_AJ_G0032020.1 mouse_genomes_project 7 28953575 28958853 + MGP_AJ_P0083109 protein_coding protein_coding MGP_AJ_T0083110.1 MGP_AJ_G0032020.1 mouse_genomes_project 7 28955401 28958846 + MGP_AJ_P0083110 protein_coding protein_coding MGP_AJ_T0082504.1 MGP_AJ_G0031876.1 mouse_genomes_project 7 25165179 25173322 - MGP_AJ_P0082504 Egln2 protein_coding protein_coding MGP_AJ_T0082505.1 MGP_AJ_G0031876.1 mouse_genomes_project 7 25165180 25167392 - Egln2 protein_coding processed_transcript MGP_AJ_T0082506.1 MGP_AJ_G0031876.1 mouse_genomes_project 7 25165509 25172933 - MGP_AJ_P0082506 Egln2 protein_coding protein_coding MGP_AJ_T0082507.1 MGP_AJ_G0031876.1 mouse_genomes_project 7 25172052 25172802 - Egln2 protein_coding processed_transcript MGP_AJ_T0086586.1 MGP_AJ_G0032970.1 mouse_genomes_project 7 127405548 127409783 + MGP_AJ_P0086586 Apobr protein_coding protein_coding MGP_AJ_T0086587.1 MGP_AJ_G0032970.1 mouse_genomes_project 7 127405597 127408624 + MGP_AJ_P0086587 Apobr protein_coding nonsense_mediated_decay MGP_AJ_T0086588.1 MGP_AJ_G0032970.1 mouse_genomes_project 7 127405598 127409043 + MGP_AJ_P0086588 Apobr protein_coding protein_coding MGP_AJ_T0086589.1 MGP_AJ_G0032970.1 mouse_genomes_project 7 127407686 127409118 + MGP_AJ_P0086589 Apobr protein_coding protein_coding MGP_AJ_T0086590.1 MGP_AJ_G0032970.1 mouse_genomes_project 7 127408145 127408998 + MGP_AJ_P0086590 Apobr protein_coding protein_coding MGP_AJ_T0008985.1 MGP_AJ_G0007242.1 mouse_genomes_project 7 100044309 100045844 - F730035P03Rik lincRNA lincRNA MGP_AJ_T0082705.1 MGP_AJ_G0031926.1 mouse_genomes_project 7 26578175 26586055 + MGP_AJ_P0082705 Lrfn1 protein_coding protein_coding MGP_AJ_T0082706.1 MGP_AJ_G0031926.1 mouse_genomes_project 7 26578343 26590257 + MGP_AJ_P0082706 Lrfn1 protein_coding protein_coding MGP_AJ_T0082707.1 MGP_AJ_G0031926.1 mouse_genomes_project 7 26578433 26587182 + Lrfn1 protein_coding retained_intron MGP_AJ_T0082708.1 MGP_AJ_G0031926.1 mouse_genomes_project 7 26585427 26590192 + MGP_AJ_P0082708 Lrfn1 protein_coding protein_coding MGP_AJ_T0082709.1 MGP_AJ_G0031926.1 mouse_genomes_project 7 26585427 26596380 + MGP_AJ_P0082709 Lrfn1 protein_coding protein_coding MGP_AJ_T0002247.1 MGP_AJ_G0002159.1 mouse_genomes_project 7 65196373 65196784 - TEC TEC MGP_AJ_T0002192.1 MGP_AJ_G0002104.1 mouse_genomes_project 7 399403 402048 - TEC TEC MGP_AJ_T0085668.1 MGP_AJ_G0032716.1 mouse_genomes_project 7 105434639 105435581 + MGP_AJ_P0085668 Olfr678 protein_coding protein_coding MGP_AJ_T0087201.1 MGP_AJ_G0033080.1 mouse_genomes_project 7 132081492 132158267 + MGP_AJ_P0087201 5430419D17Rik protein_coding protein_coding MGP_AJ_T0087202.1 MGP_AJ_G0033080.1 mouse_genomes_project 7 132118082 132142768 + 5430419D17Rik protein_coding retained_intron MGP_AJ_T0085798.1 MGP_AJ_G0032757.1 mouse_genomes_project 7 107436079 107439336 - MGP_AJ_P0085798 Olfr702 protein_coding protein_coding MGP_AJ_T0081579.1 MGP_AJ_G0031571.1 mouse_genomes_project 7 3200509 3222220 + MGP_AJ_P0081579 Zscan5b protein_coding protein_coding MGP_AJ_T0081580.1 MGP_AJ_G0031571.1 mouse_genomes_project 7 3200526 3213895 + MGP_AJ_P0081580 Zscan5b protein_coding protein_coding MGP_AJ_T0081581.1 MGP_AJ_G0031571.1 mouse_genomes_project 7 3212669 3221986 + MGP_AJ_P0081581 Zscan5b protein_coding protein_coding MGP_AJ_T0085594.1 MGP_AJ_G0032670.1 mouse_genomes_project 7 104449634 104450579 - MGP_AJ_P0085594 Olfr640 protein_coding protein_coding MGP_AJ_T0010852.1 MGP_AJ_G0008974.1 mouse_genomes_project 7 27965921 27966004 + Mir1964 miRNA miRNA MGP_AJ_T0015699.1 MGP_AJ_G0013794.1 mouse_genomes_project 7 2866185 2867258 - processed_pseudogene processed_pseudogene MGP_AJ_T0085505.1 MGP_AJ_G0032588.1 mouse_genomes_project 7 102894861 102895806 + MGP_AJ_P0085505 Olfr547 protein_coding protein_coding MGP_AJ_T0082396.1 MGP_AJ_G0031846.1 mouse_genomes_project 7 23310488 23342661 - MGP_AJ_P0082396 protein_coding protein_coding MGP_AJ_T0082397.1 MGP_AJ_G0031846.1 mouse_genomes_project 7 23310488 23342661 - MGP_AJ_P0082397 protein_coding protein_coding MGP_AJ_T0082398.1 MGP_AJ_G0031846.1 mouse_genomes_project 7 23311286 23342661 - MGP_AJ_P0082398 protein_coding protein_coding MGP_AJ_T0010835.1 MGP_AJ_G0008957.1 mouse_genomes_project 7 4279388 4279444 + Mir5620 miRNA miRNA MGP_AJ_T0005196.1 MGP_AJ_G0004423.1 mouse_genomes_project 7 33571152 33572718 - Gm45091 antisense antisense MGP_AJ_T0102900.1 MGP_AJ_G0040640.1 mouse_genomes_project 7 104277331 104277460 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0015856.1 MGP_AJ_G0013951.1 mouse_genomes_project 7 73583657 73584023 - processed_pseudogene processed_pseudogene MGP_AJ_T0085155.1 MGP_AJ_G0032511.1 mouse_genomes_project 7 98449679 98537097 - MGP_AJ_P0085155 Acer3 protein_coding protein_coding MGP_AJ_T0085156.1 MGP_AJ_G0032511.1 mouse_genomes_project 7 98452313 98537175 - MGP_AJ_P0085156 Acer3 protein_coding nonsense_mediated_decay MGP_AJ_T0085157.1 MGP_AJ_G0032511.1 mouse_genomes_project 7 98458818 98462761 - Acer3 protein_coding retained_intron MGP_AJ_T0085158.1 MGP_AJ_G0032511.1 mouse_genomes_project 7 98482708 98537153 - MGP_AJ_P0085158 Acer3 protein_coding nonsense_mediated_decay MGP_AJ_T0081650.1 MGP_AJ_G0031614.1 mouse_genomes_project 7 9501737 9502658 - MGP_AJ_P0081650 Vmn1r81 protein_coding protein_coding MGP_AJ_T0087346.1 MGP_AJ_G0033117.1 mouse_genomes_project 7 136520841 136617493 + MGP_AJ_P0087346 Ptpre protein_coding protein_coding MGP_AJ_T0100174.1 MGP_AJ_G0038140.1 mouse_genomes_project 7 110635966 110636020 + Gm24842 snRNA snRNA MGP_AJ_T0081688.1 MGP_AJ_G0031630.1 mouse_genomes_project 7 10171714 10175372 + MGP_AJ_P0081688 Rnf225 protein_coding protein_coding MGP_AJ_T0083567.1 MGP_AJ_G0032128.1 mouse_genomes_project 7 42927537 42933774 + MGP_AJ_P0083567 Klk8 protein_coding protein_coding MGP_AJ_T0083568.1 MGP_AJ_G0032128.1 mouse_genomes_project 7 42927556 42933623 + MGP_AJ_P0083568 Klk8 protein_coding protein_coding MGP_AJ_T0083569.1 MGP_AJ_G0032128.1 mouse_genomes_project 7 42931816 42933778 + Klk8 protein_coding retained_intron MGP_AJ_T0002290.1 MGP_AJ_G0002201.1 mouse_genomes_project 7 118106665 118108566 + TEC TEC MGP_AJ_T0087433.1 MGP_AJ_G0033139.1 mouse_genomes_project 7 140939630 140956625 - Adam8 protein_coding retained_intron MGP_AJ_T0087434.1 MGP_AJ_G0033139.1 mouse_genomes_project 7 140939630 140949135 - Adam8 protein_coding retained_intron MGP_AJ_T0087435.1 MGP_AJ_G0033139.1 mouse_genomes_project 7 140939630 140956625 - MGP_AJ_P0087435 Adam8 protein_coding protein_coding MGP_AJ_T0087436.1 MGP_AJ_G0033139.1 mouse_genomes_project 7 140939630 140956611 - MGP_AJ_P0087436 Adam8 protein_coding protein_coding MGP_AJ_T0087437.1 MGP_AJ_G0033139.1 mouse_genomes_project 7 140940092 140941067 - Adam8 protein_coding processed_transcript MGP_AJ_T0087438.1 MGP_AJ_G0033139.1 mouse_genomes_project 7 140944554 140956625 - MGP_AJ_P0087438 Adam8 protein_coding protein_coding MGP_AJ_T0087439.1 MGP_AJ_G0033139.1 mouse_genomes_project 7 140948354 140949131 - Adam8 protein_coding processed_transcript MGP_AJ_T0087440.1 MGP_AJ_G0033139.1 mouse_genomes_project 7 140950119 140956571 - MGP_AJ_P0087440 Adam8 protein_coding nonsense_mediated_decay MGP_AJ_T0015694.1 MGP_AJ_G0013789.1 mouse_genomes_project 7 1338266 1339291 + processed_pseudogene processed_pseudogene MGP_AJ_T0085570.1 MGP_AJ_G0032648.1 mouse_genomes_project 7 104073110 104075478 - MGP_AJ_P0085570 Olfr623 protein_coding protein_coding MGP_AJ_T0081389.1 MGP_AJ_G0031515.1 mouse_genomes_project 7 1150139 1155828 + MGP_AJ_P0081389 Lilra5 protein_coding protein_coding MGP_AJ_T0005255.1 MGP_AJ_G0004464.1 mouse_genomes_project 7 97033825 97039015 - Gm44633 antisense antisense MGP_AJ_T0083770.1 MGP_AJ_G0032168.1 mouse_genomes_project 7 44344897 44354305 - MGP_AJ_P0083770 protein_coding protein_coding MGP_AJ_T0086429.1 MGP_AJ_G0032944.1 mouse_genomes_project 7 124110040 124202390 - MGP_AJ_P0086429 Arhgap17 protein_coding protein_coding MGP_AJ_T0086430.1 MGP_AJ_G0032944.1 mouse_genomes_project 7 124110094 124202425 - MGP_AJ_P0086430 Arhgap17 protein_coding protein_coding MGP_AJ_T0086431.1 MGP_AJ_G0032944.1 mouse_genomes_project 7 124110094 124202425 - MGP_AJ_P0086431 Arhgap17 protein_coding protein_coding MGP_AJ_T0086432.1 MGP_AJ_G0032944.1 mouse_genomes_project 7 124110098 124202417 - MGP_AJ_P0086432 Arhgap17 protein_coding protein_coding MGP_AJ_T0086433.1 MGP_AJ_G0032944.1 mouse_genomes_project 7 124110103 124202442 - MGP_AJ_P0086433 Arhgap17 protein_coding nonsense_mediated_decay MGP_AJ_T0086434.1 MGP_AJ_G0032944.1 mouse_genomes_project 7 124110203 124202424 - MGP_AJ_P0086434 Arhgap17 protein_coding protein_coding MGP_AJ_T0086435.1 MGP_AJ_G0032944.1 mouse_genomes_project 7 124113777 124117176 - Arhgap17 protein_coding retained_intron MGP_AJ_T0086436.1 MGP_AJ_G0032944.1 mouse_genomes_project 7 124117920 124127527 - Arhgap17 protein_coding retained_intron MGP_AJ_T0086437.1 MGP_AJ_G0032944.1 mouse_genomes_project 7 124126211 124202454 - Arhgap17 protein_coding retained_intron MGP_AJ_T0086438.1 MGP_AJ_G0032944.1 mouse_genomes_project 7 124152605 124202454 - MGP_AJ_P0086438 Arhgap17 protein_coding nonsense_mediated_decay MGP_AJ_T0086439.1 MGP_AJ_G0032944.1 mouse_genomes_project 7 124201303 124202415 - Arhgap17 protein_coding retained_intron MGP_AJ_T0009005.1 MGP_AJ_G0007252.1 mouse_genomes_project 7 115745379 115778584 + Gm44944 lincRNA lincRNA MGP_AJ_T0009006.1 MGP_AJ_G0007252.1 mouse_genomes_project 7 115777154 115778873 + Gm44944 lincRNA lincRNA MGP_AJ_T0009007.1 MGP_AJ_G0007252.1 mouse_genomes_project 7 115778597 115778902 + Gm44944 lincRNA lincRNA MGP_AJ_T0010924.1 MGP_AJ_G0009046.1 mouse_genomes_project 7 131760996 131761064 + Mir7061 miRNA miRNA MGP_AJ_T0018327.1 MGP_AJ_G0015631.1 mouse_genomes_project 7 3643360 3653961 - Gm44015 processed_transcript lincRNA MGP_AJ_T0018328.1 MGP_AJ_G0015631.1 mouse_genomes_project 7 3643398 3649963 - Gm44015 processed_transcript retained_intron MGP_AJ_T0084812.1 MGP_AJ_G0032404.1 mouse_genomes_project 7 81187671 81250354 + MGP_AJ_P0084812 Slc28a1 protein_coding unknown_likely_coding MGP_AJ_T0086317.1 MGP_AJ_G0032919.1 mouse_genomes_project 7 121707185 121733516 - Cdr2 protein_coding processed_transcript MGP_AJ_T0086318.1 MGP_AJ_G0032919.1 mouse_genomes_project 7 121707185 121734038 - MGP_AJ_P0086318 Cdr2 protein_coding protein_coding MGP_AJ_T0008877.1 MGP_AJ_G0007166.1 mouse_genomes_project 7 42989742 42991069 - Gm44707 lincRNA lincRNA MGP_AJ_T0082394.1 MGP_AJ_G0031845.1 mouse_genomes_project 7 23248201 23261033 - MGP_AJ_P0082394 Cxcl17 protein_coding protein_coding MGP_AJ_T0082395.1 MGP_AJ_G0031845.1 mouse_genomes_project 7 23248201 23261033 - MGP_AJ_P0082395 Cxcl17 protein_coding protein_coding MGP_AJ_T0011685.1 MGP_AJ_G0009807.1 mouse_genomes_project 7 43590858 43591146 + Gm25386 misc_RNA misc_RNA MGP_AJ_T0087447.1 MGP_AJ_G0033145.1 mouse_genomes_project 7 141046162 141051786 - MGP_AJ_P0087447 Fuom protein_coding protein_coding MGP_AJ_T0087448.1 MGP_AJ_G0033145.1 mouse_genomes_project 7 141047903 141051789 - MGP_AJ_P0087448 Fuom protein_coding nonsense_mediated_decay MGP_AJ_T0087449.1 MGP_AJ_G0033145.1 mouse_genomes_project 7 141048862 141051824 - MGP_AJ_P0087449 Fuom protein_coding protein_coding MGP_AJ_T0087450.1 MGP_AJ_G0033145.1 mouse_genomes_project 7 141048862 141051759 - MGP_AJ_P0087450 Fuom protein_coding protein_coding MGP_AJ_T0087451.1 MGP_AJ_G0033145.1 mouse_genomes_project 7 141048864 141049361 - Fuom protein_coding retained_intron MGP_AJ_T0087452.1 MGP_AJ_G0033145.1 mouse_genomes_project 7 141048866 141051703 - Fuom protein_coding processed_transcript MGP_AJ_T0087453.1 MGP_AJ_G0033145.1 mouse_genomes_project 7 141048886 141050637 - Fuom protein_coding retained_intron MGP_AJ_T0087454.1 MGP_AJ_G0033145.1 mouse_genomes_project 7 141049281 141051727 - MGP_AJ_P0087454 Fuom protein_coding protein_coding MGP_AJ_T0087455.1 MGP_AJ_G0033145.1 mouse_genomes_project 7 141049949 141051789 - MGP_AJ_P0087455 Fuom protein_coding protein_coding MGP_AJ_T0087456.1 MGP_AJ_G0033145.1 mouse_genomes_project 7 141050495 141051689 - Fuom protein_coding processed_transcript MGP_AJ_T0087457.1 MGP_AJ_G0033145.1 mouse_genomes_project 7 141050547 141051349 - Fuom protein_coding processed_transcript MGP_AJ_T0087458.1 MGP_AJ_G0033145.1 mouse_genomes_project 7 141050556 141051789 - Fuom protein_coding retained_intron MGP_AJ_T0087459.1 MGP_AJ_G0033145.1 mouse_genomes_project 7 141050671 141051713 - Fuom protein_coding retained_intron MGP_AJ_T0086319.1 MGP_AJ_G0032920.1 mouse_genomes_project 7 121734234 121770635 + MGP_AJ_P0086319 Mfsd13b protein_coding protein_coding MGP_AJ_T0086320.1 MGP_AJ_G0032920.1 mouse_genomes_project 7 121734250 121743124 + MGP_AJ_P0086320 Mfsd13b protein_coding protein_coding MGP_AJ_T0086321.1 MGP_AJ_G0032920.1 mouse_genomes_project 7 121734253 121740762 + MGP_AJ_P0086321 Mfsd13b protein_coding protein_coding MGP_AJ_T0086322.1 MGP_AJ_G0032920.1 mouse_genomes_project 7 121743478 121770635 + MGP_AJ_P0086322 Mfsd13b protein_coding protein_coding MGP_AJ_T0084345.1 MGP_AJ_G0032322.1 mouse_genomes_project 7 65482023 65523798 + Tarsl2 protein_coding retained_intron MGP_AJ_T0084346.1 MGP_AJ_G0032322.1 mouse_genomes_project 7 65482023 65532071 + MGP_AJ_P0084346 Tarsl2 protein_coding protein_coding MGP_AJ_T0084347.1 MGP_AJ_G0032322.1 mouse_genomes_project 7 65498655 65501366 + Tarsl2 protein_coding retained_intron MGP_AJ_T0084348.1 MGP_AJ_G0032322.1 mouse_genomes_project 7 65518045 65530062 + Tarsl2 protein_coding processed_transcript MGP_AJ_T0084492.1 MGP_AJ_G0032350.1 mouse_genomes_project 7 73818577 73893209 - MGP_AJ_P0084492 St8sia2 protein_coding protein_coding MGP_AJ_T0084493.1 MGP_AJ_G0032350.1 mouse_genomes_project 7 73840254 73893225 - MGP_AJ_P0084493 St8sia2 protein_coding protein_coding MGP_AJ_T0008979.1 MGP_AJ_G0007237.1 mouse_genomes_project 7 98619652 98649020 - Gm44507 lincRNA lincRNA MGP_AJ_T0102874.1 MGP_AJ_G0040614.1 mouse_genomes_project 7 85655977 85656884 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0002301.1 MGP_AJ_G0002212.1 mouse_genomes_project 7 123512802 123514430 - TEC TEC MGP_AJ_T0082173.1 MGP_AJ_G0031783.1 mouse_genomes_project 7 21069735 21133633 + MGP_AJ_P0082173 Nlrp5 protein_coding protein_coding MGP_AJ_T0082174.1 MGP_AJ_G0031783.1 mouse_genomes_project 7 21069747 21133634 + MGP_AJ_P0082174 Nlrp5 protein_coding protein_coding MGP_AJ_T0082175.1 MGP_AJ_G0031783.1 mouse_genomes_project 7 21088011 21133634 + MGP_AJ_P0082175 Nlrp5 protein_coding protein_coding MGP_AJ_T0010917.1 MGP_AJ_G0009039.1 mouse_genomes_project 7 127400115 127400174 - Mir7059 miRNA miRNA MGP_AJ_T0002259.1 MGP_AJ_G0002170.1 mouse_genomes_project 7 75373529 75374925 + TEC TEC MGP_AJ_T0008835.1 MGP_AJ_G0007134.1 mouse_genomes_project 7 29094552 29095967 + Gm29440 lincRNA lincRNA MGP_AJ_T0083866.1 MGP_AJ_G0032197.1 mouse_genomes_project 7 44792683 44798103 + MGP_AJ_P0083866 Kcna7 protein_coding protein_coding MGP_AJ_T0087110.1 MGP_AJ_G0033066.1 mouse_genomes_project 7 129382637 129412031 + MGP_AJ_P0087110 Bag3 protein_coding protein_coding MGP_AJ_T0015930.1 MGP_AJ_G0014025.1 mouse_genomes_project 7 126989220 126989631 + processed_pseudogene processed_pseudogene MGP_AJ_T0085558.1 MGP_AJ_G0032636.1 mouse_genomes_project 7 103879551 103880502 + MGP_AJ_P0085558 Olfr608 protein_coding protein_coding MGP_AJ_T0002313.1 MGP_AJ_G0002224.1 mouse_genomes_project 7 128651448 128652792 - TEC TEC MGP_AJ_T0085588.1 MGP_AJ_G0032664.1 mouse_genomes_project 7 104365087 104366041 + MGP_AJ_P0085588 Olfr632 protein_coding protein_coding MGP_AJ_T0018438.1 MGP_AJ_G0015680.1 mouse_genomes_project 7 143538886 143553649 - Nctc1 processed_transcript antisense MGP_AJ_T0018439.1 MGP_AJ_G0015680.1 mouse_genomes_project 7 143548752 143553649 - Nctc1 processed_transcript retained_intron MGP_AJ_T0082635.1 MGP_AJ_G0031904.1 mouse_genomes_project 7 25993790 26018111 - MGP_AJ_P0082635 Zfp974 protein_coding protein_coding MGP_AJ_T0008822.1 MGP_AJ_G0007122.1 mouse_genomes_project 7 17420396 17425189 + Gm26600 lincRNA lincRNA MGP_AJ_T0084791.1 MGP_AJ_G0032400.1 mouse_genomes_project 7 80964535 80966690 - Nmb protein_coding retained_intron MGP_AJ_T0084792.1 MGP_AJ_G0032400.1 mouse_genomes_project 7 80964536 80967373 - MGP_AJ_P0084792 Nmb protein_coding protein_coding MGP_AJ_T0084793.1 MGP_AJ_G0032400.1 mouse_genomes_project 7 80964542 80966671 - Nmb protein_coding retained_intron MGP_AJ_T0084794.1 MGP_AJ_G0032400.1 mouse_genomes_project 7 80964542 80967357 - MGP_AJ_P0084794 Nmb protein_coding protein_coding MGP_AJ_T0083434.1 MGP_AJ_G0032081.1 mouse_genomes_project 7 36684861 36697600 + MGP_AJ_P0083434 protein_coding protein_coding MGP_AJ_T0083435.1 MGP_AJ_G0032081.1 mouse_genomes_project 7 36684884 36685544 + protein_coding processed_transcript MGP_AJ_T0083436.1 MGP_AJ_G0032081.1 mouse_genomes_project 7 36684905 36696626 + MGP_AJ_P0083436 protein_coding protein_coding MGP_AJ_T0083437.1 MGP_AJ_G0032081.1 mouse_genomes_project 7 36685297 36697600 + MGP_AJ_P0083437 protein_coding protein_coding MGP_AJ_T0083438.1 MGP_AJ_G0032081.1 mouse_genomes_project 7 36685492 36701446 + MGP_AJ_P0083438 protein_coding protein_coding MGP_AJ_T0101459.1 MGP_AJ_G0039425.1 mouse_genomes_project 7 144513628 144513755 - Gm23297 snoRNA snoRNA MGP_AJ_T0084103.1 MGP_AJ_G0032262.1 mouse_genomes_project 7 46754546 46755592 - MGP_AJ_P0084103 Mrgpra9 protein_coding protein_coding MGP_AJ_T0002287.1 MGP_AJ_G0002198.1 mouse_genomes_project 7 100740790 100741726 + TEC TEC MGP_AJ_T0018403.1 MGP_AJ_G0015660.1 mouse_genomes_project 7 98411023 98413233 + Gm16938 processed_transcript processed_transcript MGP_AJ_T0018404.1 MGP_AJ_G0015660.1 mouse_genomes_project 7 98411070 98413233 + Gm16938 processed_transcript processed_transcript MGP_AJ_T0082019.1 MGP_AJ_G0031737.1 mouse_genomes_project 7 16781613 16791206 - MGP_AJ_P0082019 Qpctl protein_coding protein_coding MGP_AJ_T0082020.1 MGP_AJ_G0031737.1 mouse_genomes_project 7 16785475 16789443 - Qpctl protein_coding retained_intron MGP_AJ_T0084014.1 MGP_AJ_G0032237.1 mouse_genomes_project 7 45435389 45487168 + MGP_AJ_P0084014 Nomo1 protein_coding protein_coding MGP_AJ_T0084015.1 MGP_AJ_G0032237.1 mouse_genomes_project 7 45452190 45452971 + Nomo1 protein_coding retained_intron MGP_AJ_T0084016.1 MGP_AJ_G0032237.1 mouse_genomes_project 7 45456293 45459317 + Nomo1 protein_coding retained_intron MGP_AJ_T0084017.1 MGP_AJ_G0032237.1 mouse_genomes_project 7 45460589 45463347 + Nomo1 protein_coding retained_intron MGP_AJ_T0084018.1 MGP_AJ_G0032237.1 mouse_genomes_project 7 45485600 45486760 + Nomo1 protein_coding retained_intron MGP_AJ_T0084502.1 MGP_AJ_G0032352.1 mouse_genomes_project 7 75022798 75104576 - MGP_AJ_P0084502 protein_coding unknown_likely_coding MGP_AJ_T0084503.1 MGP_AJ_G0032352.1 mouse_genomes_project 7 75027855 75055291 - MGP_AJ_P0084503 protein_coding nonsense_mediated_decay MGP_AJ_T0084504.1 MGP_AJ_G0032352.1 mouse_genomes_project 7 75064198 75068861 - protein_coding processed_transcript MGP_AJ_T0084505.1 MGP_AJ_G0032352.1 mouse_genomes_project 7 75064198 75068850 - protein_coding processed_transcript MGP_AJ_T0084506.1 MGP_AJ_G0032352.1 mouse_genomes_project 7 75100144 75203719 - protein_coding retained_intron MGP_AJ_T0008974.1 MGP_AJ_G0007234.1 mouse_genomes_project 7 93240092 93269827 - Gm9934 lincRNA lincRNA MGP_AJ_T0008975.1 MGP_AJ_G0007234.1 mouse_genomes_project 7 93256180 93269595 - Gm9934 lincRNA lincRNA MGP_AJ_T0085150.1 MGP_AJ_G0032509.1 mouse_genomes_project 7 98377416 98379560 - MGP_AJ_P0085150 Omp protein_coding protein_coding MGP_AJ_T0002285.1 MGP_AJ_G0002196.1 mouse_genomes_project 7 92816093 92816412 + TEC TEC MGP_AJ_T0087445.1 MGP_AJ_G0033143.1 mouse_genomes_project 7 141020127 141032803 - MGP_AJ_P0087445 Caly protein_coding unknown_likely_coding MGP_AJ_T0086800.1 MGP_AJ_G0033006.1 mouse_genomes_project 7 128023814 128027696 - MGP_AJ_P0086800 protein_coding unknown_likely_coding MGP_AJ_T0086801.1 MGP_AJ_G0033006.1 mouse_genomes_project 7 128023816 128027645 - protein_coding retained_intron MGP_AJ_T0086802.1 MGP_AJ_G0033006.1 mouse_genomes_project 7 128026157 128027140 - MGP_AJ_P0086802 protein_coding nonsense_mediated_decay MGP_AJ_T0086803.1 MGP_AJ_G0033006.1 mouse_genomes_project 7 128026222 128027638 - MGP_AJ_P0086803 protein_coding protein_coding MGP_AJ_T0086804.1 MGP_AJ_G0033006.1 mouse_genomes_project 7 128026317 128027662 - MGP_AJ_P0086804 protein_coding protein_coding MGP_AJ_T0086805.1 MGP_AJ_G0033006.1 mouse_genomes_project 7 128026787 128027746 - MGP_AJ_P0086805 protein_coding protein_coding MGP_AJ_T0084241.1 MGP_AJ_G0032298.1 mouse_genomes_project 7 57347414 57450880 - MGP_AJ_P0084241 Gabra5 protein_coding protein_coding MGP_AJ_T0084242.1 MGP_AJ_G0032298.1 mouse_genomes_project 7 57347461 57450254 - MGP_AJ_P0084242 Gabra5 protein_coding protein_coding MGP_AJ_T0084243.1 MGP_AJ_G0032298.1 mouse_genomes_project 7 57347647 57450930 - MGP_AJ_P0084243 Gabra5 protein_coding protein_coding MGP_AJ_T0005193.1 MGP_AJ_G0004420.1 mouse_genomes_project 7 32832261 32838376 + Gm12764 antisense antisense MGP_AJ_T0018354.1 MGP_AJ_G0015645.1 mouse_genomes_project 7 44752011 44753797 + Mtag2 processed_transcript processed_transcript MGP_AJ_T0018355.1 MGP_AJ_G0015645.1 mouse_genomes_project 7 44753081 44753797 + Mtag2 processed_transcript pseudogene MGP_AJ_T0082575.1 MGP_AJ_G0031890.1 mouse_genomes_project 7 25471240 25490481 + MGP_AJ_P0082575 Blvrb protein_coding protein_coding MGP_AJ_T0082576.1 MGP_AJ_G0031890.1 mouse_genomes_project 7 25471262 25484246 + MGP_AJ_P0082576 Blvrb protein_coding protein_coding MGP_AJ_T0082577.1 MGP_AJ_G0031890.1 mouse_genomes_project 7 25471326 25490447 + MGP_AJ_P0082577 Blvrb protein_coding protein_coding MGP_AJ_T0082578.1 MGP_AJ_G0031890.1 mouse_genomes_project 7 25476228 25487179 + Blvrb protein_coding processed_transcript MGP_AJ_T0084250.1 MGP_AJ_G0032300.1 mouse_genomes_project 7 58604853 58777972 + MGP_AJ_P0084250 Atp10a protein_coding protein_coding MGP_AJ_T0102909.1 MGP_AJ_G0040649.1 mouse_genomes_project 7 105455852 105457810 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0083550.1 MGP_AJ_G0032119.1 mouse_genomes_project 7 42761708 42776252 + MGP_AJ_P0083550 Ceacam18 protein_coding protein_coding MGP_AJ_T0008861.1 MGP_AJ_G0007156.1 mouse_genomes_project 7 38505289 38505860 - lincRNA lincRNA MGP_AJ_T0102843.1 MGP_AJ_G0040583.1 mouse_genomes_project 7 47374743 47375230 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0085237.1 MGP_AJ_G0032533.1 mouse_genomes_project 7 100136104 100195249 + MGP_AJ_P0085237 Xrra1 protein_coding protein_coding MGP_AJ_T0081439.1 MGP_AJ_G0031523.1 mouse_genomes_project 7 1437781 1439241 - Tnni3 protein_coding retained_intron MGP_AJ_T0081440.1 MGP_AJ_G0031523.1 mouse_genomes_project 7 1437781 1441875 - MGP_AJ_P0081440 Tnni3 protein_coding protein_coding MGP_AJ_T0081441.1 MGP_AJ_G0031523.1 mouse_genomes_project 7 1437784 1439916 - Tnni3 protein_coding retained_intron MGP_AJ_T0081442.1 MGP_AJ_G0031523.1 mouse_genomes_project 7 1439786 1442141 - MGP_AJ_P0081442 Tnni3 protein_coding protein_coding MGP_AJ_T0081443.1 MGP_AJ_G0031523.1 mouse_genomes_project 7 1439825 1443576 - MGP_AJ_P0081443 Tnni3 protein_coding protein_coding MGP_AJ_T0081444.1 MGP_AJ_G0031523.1 mouse_genomes_project 7 1440390 1441789 - Tnni3 protein_coding retained_intron MGP_AJ_T0081445.1 MGP_AJ_G0031523.1 mouse_genomes_project 7 1440687 1441839 - Tnni3 protein_coding retained_intron MGP_AJ_T0085568.1 MGP_AJ_G0032646.1 mouse_genomes_project 7 104019299 104020241 - MGP_AJ_P0085568 Olfr620 protein_coding protein_coding MGP_AJ_T0015821.1 MGP_AJ_G0013916.1 mouse_genomes_project 7 43619372 43620300 - processed_pseudogene processed_pseudogene MGP_AJ_T0082872.1 MGP_AJ_G0031965.1 mouse_genomes_project 7 28017299 28034411 + MGP_AJ_P0082872 Zfp790 protein_coding protein_coding MGP_AJ_T0082873.1 MGP_AJ_G0031965.1 mouse_genomes_project 7 28017299 28034411 + MGP_AJ_P0082873 Zfp790 protein_coding protein_coding MGP_AJ_T0082808.1 MGP_AJ_G0031950.1 mouse_genomes_project 7 27316911 27320570 - MGP_AJ_P0082808 Fam98c protein_coding protein_coding MGP_AJ_T0082809.1 MGP_AJ_G0031950.1 mouse_genomes_project 7 27316914 27320610 - MGP_AJ_P0082809 Fam98c protein_coding protein_coding MGP_AJ_T0082810.1 MGP_AJ_G0031950.1 mouse_genomes_project 7 27316915 27320583 - Fam98c protein_coding retained_intron MGP_AJ_T0082811.1 MGP_AJ_G0031950.1 mouse_genomes_project 7 27316915 27320603 - Fam98c protein_coding retained_intron MGP_AJ_T0082812.1 MGP_AJ_G0031950.1 mouse_genomes_project 7 27316915 27320583 - Fam98c protein_coding retained_intron MGP_AJ_T0082813.1 MGP_AJ_G0031950.1 mouse_genomes_project 7 27316922 27320560 - MGP_AJ_P0082813 Fam98c protein_coding protein_coding MGP_AJ_T0082814.1 MGP_AJ_G0031950.1 mouse_genomes_project 7 27316957 27320119 - MGP_AJ_P0082814 Fam98c protein_coding protein_coding MGP_AJ_T0082815.1 MGP_AJ_G0031950.1 mouse_genomes_project 7 27317796 27320634 - MGP_AJ_P0082815 Fam98c protein_coding protein_coding MGP_AJ_T0082816.1 MGP_AJ_G0031950.1 mouse_genomes_project 7 27317827 27320003 - MGP_AJ_P0082816 Fam98c protein_coding protein_coding MGP_AJ_T0082817.1 MGP_AJ_G0031950.1 mouse_genomes_project 7 27317910 27320603 - Fam98c protein_coding processed_transcript MGP_AJ_T0083255.1 MGP_AJ_G0032049.1 mouse_genomes_project 7 32515017 32523678 + MGP_AJ_P0083255 Scgb1b30 protein_coding protein_coding MGP_AJ_T0087236.1 MGP_AJ_G0033093.1 mouse_genomes_project 7 133152904 133234734 - MGP_AJ_P0087236 Chst15 protein_coding protein_coding MGP_AJ_T0087237.1 MGP_AJ_G0033093.1 mouse_genomes_project 7 133152904 133234220 - MGP_AJ_P0087237 Chst15 protein_coding protein_coding MGP_AJ_T0087238.1 MGP_AJ_G0033093.1 mouse_genomes_project 7 133152932 133189301 - MGP_AJ_P0087238 Chst15 protein_coding unknown_likely_coding MGP_AJ_T0087239.1 MGP_AJ_G0033093.1 mouse_genomes_project 7 133187857 133195570 - Chst15 protein_coding processed_transcript MGP_AJ_T0002239.1 MGP_AJ_G0002151.1 mouse_genomes_project 7 63642131 63642490 + TEC TEC MGP_AJ_T0002216.1 MGP_AJ_G0002128.1 mouse_genomes_project 7 38499393 38502376 + TEC TEC MGP_AJ_T0081706.1 MGP_AJ_G0031635.1 mouse_genomes_project 7 10272473 10279338 + MGP_AJ_P0081706 Trim28 protein_coding protein_coding MGP_AJ_T0081707.1 MGP_AJ_G0031635.1 mouse_genomes_project 7 10275919 10277427 + Trim28 protein_coding retained_intron MGP_AJ_T0081708.1 MGP_AJ_G0031635.1 mouse_genomes_project 7 10276131 10276805 + Trim28 protein_coding retained_intron MGP_AJ_T0081709.1 MGP_AJ_G0031635.1 mouse_genomes_project 7 10276323 10277902 + Trim28 protein_coding retained_intron MGP_AJ_T0081710.1 MGP_AJ_G0031635.1 mouse_genomes_project 7 10276707 10277668 + Trim28 protein_coding retained_intron MGP_AJ_T0081711.1 MGP_AJ_G0031635.1 mouse_genomes_project 7 10277182 10278229 + Trim28 protein_coding retained_intron MGP_AJ_T0081712.1 MGP_AJ_G0031635.1 mouse_genomes_project 7 10277393 10278298 + Trim28 protein_coding retained_intron MGP_AJ_T0081713.1 MGP_AJ_G0031635.1 mouse_genomes_project 7 10278006 10278650 + Trim28 protein_coding retained_intron MGP_AJ_T0081714.1 MGP_AJ_G0031635.1 mouse_genomes_project 7 10278674 10279335 + Trim28 protein_coding retained_intron MGP_AJ_T0101457.1 MGP_AJ_G0039423.1 mouse_genomes_project 7 142442350 142442487 + Snora52 snoRNA snoRNA MGP_AJ_T0087999.1 MGP_AJ_G0033274.1 mouse_genomes_project 7 145854745 145859382 + MGP_AJ_P0087999 Fgf3 protein_coding protein_coding MGP_AJ_T0088000.1 MGP_AJ_G0033274.1 mouse_genomes_project 7 145855257 145861099 + MGP_AJ_P0088000 Fgf3 protein_coding protein_coding MGP_AJ_T0008908.1 MGP_AJ_G0007189.1 mouse_genomes_project 7 70257958 70274284 - Gm28258 lincRNA lincRNA MGP_AJ_T0086299.1 MGP_AJ_G0032916.1 mouse_genomes_project 7 121482565 121554021 + MGP_AJ_P0086299 Vwa3a protein_coding protein_coding MGP_AJ_T0086300.1 MGP_AJ_G0032916.1 mouse_genomes_project 7 121482565 121537993 + MGP_AJ_P0086300 Vwa3a protein_coding nonsense_mediated_decay MGP_AJ_T0086301.1 MGP_AJ_G0032916.1 mouse_genomes_project 7 121483055 121554214 + MGP_AJ_P0086301 Vwa3a protein_coding protein_coding MGP_AJ_T0086302.1 MGP_AJ_G0032916.1 mouse_genomes_project 7 121483055 121554018 + MGP_AJ_P0086302 Vwa3a protein_coding protein_coding MGP_AJ_T0086303.1 MGP_AJ_G0032916.1 mouse_genomes_project 7 121483119 121553487 + MGP_AJ_P0086303 Vwa3a protein_coding unknown_likely_coding MGP_AJ_T0086304.1 MGP_AJ_G0032916.1 mouse_genomes_project 7 121526374 121537994 + MGP_AJ_P0086304 Vwa3a protein_coding protein_coding MGP_AJ_T0086305.1 MGP_AJ_G0032916.1 mouse_genomes_project 7 121528032 121537994 + Vwa3a protein_coding processed_transcript MGP_AJ_T0086306.1 MGP_AJ_G0032916.1 mouse_genomes_project 7 121530460 121540512 + MGP_AJ_P0086306 Vwa3a protein_coding protein_coding MGP_AJ_T0010904.1 MGP_AJ_G0009026.1 mouse_genomes_project 7 96467229 96467338 + Mir708 miRNA miRNA MGP_AJ_T0015865.1 MGP_AJ_G0013960.1 mouse_genomes_project 7 80280838 80281954 - processed_pseudogene processed_pseudogene MGP_AJ_T0085212.1 MGP_AJ_G0032525.1 mouse_genomes_project 7 99731494 99737325 - MGP_AJ_P0085212 Rps3 protein_coding protein_coding MGP_AJ_T0085213.1 MGP_AJ_G0032525.1 mouse_genomes_project 7 99731502 99737238 - MGP_AJ_P0085213 Rps3 protein_coding protein_coding MGP_AJ_T0085214.1 MGP_AJ_G0032525.1 mouse_genomes_project 7 99732479 99737237 - Rps3 protein_coding retained_intron MGP_AJ_T0085215.1 MGP_AJ_G0032525.1 mouse_genomes_project 7 99733296 99737221 - Rps3 protein_coding retained_intron MGP_AJ_T0083386.1 MGP_AJ_G0032074.1 mouse_genomes_project 7 34110689 34116506 - MGP_AJ_P0083386 Pdcd5 protein_coding protein_coding MGP_AJ_T0083387.1 MGP_AJ_G0032074.1 mouse_genomes_project 7 34110719 34116178 - MGP_AJ_P0083387 Pdcd5 protein_coding protein_coding MGP_AJ_T0083388.1 MGP_AJ_G0032074.1 mouse_genomes_project 7 34110721 34111857 - Pdcd5 protein_coding retained_intron MGP_AJ_T0083389.1 MGP_AJ_G0032074.1 mouse_genomes_project 7 34110723 34112668 - Pdcd5 protein_coding retained_intron MGP_AJ_T0083390.1 MGP_AJ_G0032074.1 mouse_genomes_project 7 34112634 34116489 - Pdcd5 protein_coding retained_intron MGP_AJ_T0083391.1 MGP_AJ_G0032074.1 mouse_genomes_project 7 34112999 34116465 - Pdcd5 protein_coding retained_intron MGP_AJ_T0083392.1 MGP_AJ_G0032074.1 mouse_genomes_project 7 34114646 34116451 - Pdcd5 protein_coding retained_intron MGP_AJ_T0084928.1 MGP_AJ_G0032439.1 mouse_genomes_project 7 85002437 85003493 + MGP_AJ_P0084928 protein_coding protein_coding MGP_AJ_T0081752.1 MGP_AJ_G0031646.1 mouse_genomes_project 7 10582851 10617779 + MGP_AJ_P0081752 Pla2g4c protein_coding protein_coding MGP_AJ_T0081753.1 MGP_AJ_G0031646.1 mouse_genomes_project 7 10583863 10619091 + MGP_AJ_P0081753 Pla2g4c protein_coding protein_coding MGP_AJ_T0081754.1 MGP_AJ_G0031646.1 mouse_genomes_project 7 10587360 10588700 + Pla2g4c protein_coding processed_transcript MGP_AJ_T0081755.1 MGP_AJ_G0031646.1 mouse_genomes_project 7 10587933 10619095 + MGP_AJ_P0081755 Pla2g4c protein_coding protein_coding MGP_AJ_T0008924.1 MGP_AJ_G0007204.1 mouse_genomes_project 7 73177032 73181840 + 4930429H19Rik lincRNA lincRNA MGP_AJ_T0008925.1 MGP_AJ_G0007204.1 mouse_genomes_project 7 73177182 73178607 + 4930429H19Rik lincRNA lincRNA MGP_AJ_T0087779.1 MGP_AJ_G0033231.1 mouse_genomes_project 7 143211713 143212731 - MGP_AJ_P0087779 Krtap5-5 protein_coding protein_coding MGP_AJ_T0005162.1 MGP_AJ_G0004396.1 mouse_genomes_project 7 21860030 21864173 - Gm44793 antisense antisense MGP_AJ_T0015834.1 MGP_AJ_G0013929.1 mouse_genomes_project 7 56688430 56689442 + processed_pseudogene processed_pseudogene MGP_AJ_T0085317.1 MGP_AJ_G0032550.1 mouse_genomes_project 7 101048559 101129586 + MGP_AJ_P0085317 Fam168a protein_coding protein_coding MGP_AJ_T0008880.1 MGP_AJ_G0007169.1 mouse_genomes_project 7 44615556 44633160 + lincRNA lincRNA MGP_AJ_T0008881.1 MGP_AJ_G0007169.1 mouse_genomes_project 7 44633121 44646722 + lincRNA lincRNA MGP_AJ_T0008836.1 MGP_AJ_G0007135.1 mouse_genomes_project 7 32660948 32666947 + Gm26762 lincRNA lincRNA MGP_AJ_T0087408.1 MGP_AJ_G0033133.1 mouse_genomes_project 7 140525288 140528709 - MGP_AJ_P0087408 Nkx6-2 protein_coding nonsense_mediated_decay MGP_AJ_T0087409.1 MGP_AJ_G0033133.1 mouse_genomes_project 7 140527131 140528702 - MGP_AJ_P0087409 Nkx6-2 protein_coding protein_coding MGP_AJ_T0102908.1 MGP_AJ_G0040648.1 mouse_genomes_project 7 105053579 105054545 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0083701.1 MGP_AJ_G0032155.1 mouse_genomes_project 7 44092415 44106717 - MGP_AJ_P0083701 Zfp473 protein_coding protein_coding MGP_AJ_T0083702.1 MGP_AJ_G0032155.1 mouse_genomes_project 7 44092425 44111109 - MGP_AJ_P0083702 Zfp473 protein_coding protein_coding MGP_AJ_T0083703.1 MGP_AJ_G0032155.1 mouse_genomes_project 7 44092437 44110883 - MGP_AJ_P0083703 Zfp473 protein_coding protein_coding MGP_AJ_T0083704.1 MGP_AJ_G0032155.1 mouse_genomes_project 7 44092449 44110541 - MGP_AJ_P0083704 Zfp473 protein_coding protein_coding MGP_AJ_T0083705.1 MGP_AJ_G0032155.1 mouse_genomes_project 7 44092943 44110798 - MGP_AJ_P0083705 Zfp473 protein_coding protein_coding MGP_AJ_T0083706.1 MGP_AJ_G0032155.1 mouse_genomes_project 7 44095393 44110841 - MGP_AJ_P0083706 Zfp473 protein_coding protein_coding MGP_AJ_T0083707.1 MGP_AJ_G0032155.1 mouse_genomes_project 7 44095544 44113536 - MGP_AJ_P0083707 Zfp473 protein_coding protein_coding MGP_AJ_T0084556.1 MGP_AJ_G0032361.1 mouse_genomes_project 7 78912098 78918892 + MGP_AJ_P0084556 Isg20 protein_coding protein_coding MGP_AJ_T0084557.1 MGP_AJ_G0032361.1 mouse_genomes_project 7 78912132 78918982 + MGP_AJ_P0084557 Isg20 protein_coding protein_coding MGP_AJ_T0084558.1 MGP_AJ_G0032361.1 mouse_genomes_project 7 78912439 78919076 + MGP_AJ_P0084558 Isg20 protein_coding protein_coding MGP_AJ_T0084559.1 MGP_AJ_G0032361.1 mouse_genomes_project 7 78912655 78915693 + Isg20 protein_coding retained_intron MGP_AJ_T0084560.1 MGP_AJ_G0032361.1 mouse_genomes_project 7 78912909 78919027 + MGP_AJ_P0084560 Isg20 protein_coding protein_coding MGP_AJ_T0084561.1 MGP_AJ_G0032361.1 mouse_genomes_project 7 78913003 78918862 + MGP_AJ_P0084561 Isg20 protein_coding protein_coding MGP_AJ_T0082987.1 MGP_AJ_G0031992.1 mouse_genomes_project 7 28531414 28533133 + MGP_AJ_P0082987 E130208F15Rik protein_coding protein_coding MGP_AJ_T0002252.1 MGP_AJ_G0002164.1 mouse_genomes_project 7 73376166 73377413 - TEC TEC MGP_AJ_T0010842.1 MGP_AJ_G0008964.1 mouse_genomes_project 7 22808576 22808642 - Mir7046 miRNA miRNA MGP_AJ_T0015912.1 MGP_AJ_G0014007.1 mouse_genomes_project 7 110027372 110028770 - processed_pseudogene processed_pseudogene MGP_AJ_T0010910.1 MGP_AJ_G0009032.1 mouse_genomes_project 7 110162906 110163026 + miRNA miRNA MGP_AJ_T0086334.1 MGP_AJ_G0032926.1 mouse_genomes_project 7 122424991 122495065 - MGP_AJ_P0086334 Usp31 protein_coding protein_coding MGP_AJ_T0086335.1 MGP_AJ_G0032926.1 mouse_genomes_project 7 122441770 122450487 - Usp31 protein_coding retained_intron MGP_AJ_T0085014.1 MGP_AJ_G0032481.1 mouse_genomes_project 7 90628728 90632117 + MGP_AJ_P0085014 Crebzf protein_coding protein_coding MGP_AJ_T0085015.1 MGP_AJ_G0032481.1 mouse_genomes_project 7 90628780 90633730 + MGP_AJ_P0085015 Crebzf protein_coding protein_coding MGP_AJ_T0085016.1 MGP_AJ_G0032481.1 mouse_genomes_project 7 90629669 90630701 + Crebzf protein_coding processed_transcript MGP_AJ_T0085017.1 MGP_AJ_G0032481.1 mouse_genomes_project 7 90629669 90630376 + MGP_AJ_P0085017 Crebzf protein_coding protein_coding MGP_AJ_T0085018.1 MGP_AJ_G0032481.1 mouse_genomes_project 7 90629841 90632003 + Crebzf protein_coding processed_transcript MGP_AJ_T0085019.1 MGP_AJ_G0032481.1 mouse_genomes_project 7 90630702 90632108 + Crebzf protein_coding processed_transcript MGP_AJ_T0018336.1 MGP_AJ_G0015636.1 mouse_genomes_project 7 25683065 25685066 - Gm44685 processed_transcript processed_transcript MGP_AJ_T0102899.1 MGP_AJ_G0040639.1 mouse_genomes_project 7 104258351 104259439 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0084518.1 MGP_AJ_G0032356.1 mouse_genomes_project 7 78163917 78567165 - MGP_AJ_P0084518 Ntrk3 protein_coding protein_coding MGP_AJ_T0084519.1 MGP_AJ_G0032356.1 mouse_genomes_project 7 78169084 78180953 - MGP_AJ_P0084519 Ntrk3 protein_coding nonsense_mediated_decay MGP_AJ_T0084520.1 MGP_AJ_G0032356.1 mouse_genomes_project 7 78180589 78566540 - MGP_AJ_P0084520 Ntrk3 protein_coding protein_coding MGP_AJ_T0084521.1 MGP_AJ_G0032356.1 mouse_genomes_project 7 78180616 78566546 - MGP_AJ_P0084521 Ntrk3 protein_coding protein_coding MGP_AJ_T0084522.1 MGP_AJ_G0032356.1 mouse_genomes_project 7 78236105 78250679 - MGP_AJ_P0084522 Ntrk3 protein_coding nonsense_mediated_decay MGP_AJ_T0084523.1 MGP_AJ_G0032356.1 mouse_genomes_project 7 78288164 78566739 - MGP_AJ_P0084523 Ntrk3 protein_coding protein_coding MGP_AJ_T0084524.1 MGP_AJ_G0032356.1 mouse_genomes_project 7 78289797 78365467 - Ntrk3 protein_coding processed_transcript MGP_AJ_T0084525.1 MGP_AJ_G0032356.1 mouse_genomes_project 7 78290105 78343792 - MGP_AJ_P0084525 Ntrk3 protein_coding nonsense_mediated_decay MGP_AJ_T0084526.1 MGP_AJ_G0032356.1 mouse_genomes_project 7 78343753 78439261 - Ntrk3 protein_coding processed_transcript MGP_AJ_T0084527.1 MGP_AJ_G0032356.1 mouse_genomes_project 7 78436763 78566732 - Ntrk3 protein_coding retained_intron MGP_AJ_T0084528.1 MGP_AJ_G0032356.1 mouse_genomes_project 7 78465511 78560647 - Ntrk3 protein_coding processed_transcript MGP_AJ_T0084529.1 MGP_AJ_G0032356.1 mouse_genomes_project 7 78504761 78614326 - Ntrk3 protein_coding processed_transcript MGP_AJ_T0084530.1 MGP_AJ_G0032356.1 mouse_genomes_project 7 78505495 78567160 - MGP_AJ_P0084530 Ntrk3 protein_coding protein_coding MGP_AJ_T0084531.1 MGP_AJ_G0032356.1 mouse_genomes_project 7 78566292 78649620 - MGP_AJ_P0084531 Ntrk3 protein_coding protein_coding MGP_AJ_T0084532.1 MGP_AJ_G0032356.1 mouse_genomes_project 7 78566562 78567450 - Ntrk3 protein_coding processed_transcript MGP_AJ_T0084533.1 MGP_AJ_G0032356.1 mouse_genomes_project 7 78569817 78712749 - Ntrk3 protein_coding processed_transcript MGP_AJ_T0084534.1 MGP_AJ_G0032356.1 mouse_genomes_project 7 78576128 78732795 - Ntrk3 protein_coding processed_transcript MGP_AJ_T0084535.1 MGP_AJ_G0032356.1 mouse_genomes_project 7 78583200 78650005 - Ntrk3 protein_coding processed_transcript MGP_AJ_T0084536.1 MGP_AJ_G0032356.1 mouse_genomes_project 7 78721358 78732797 - Ntrk3 protein_coding processed_transcript MGP_AJ_T0084537.1 MGP_AJ_G0032356.1 mouse_genomes_project 7 78725263 78732797 - Ntrk3 protein_coding processed_transcript MGP_AJ_T0084645.1 MGP_AJ_G0032378.1 mouse_genomes_project 7 79903400 79948991 - MGP_AJ_P0084645 Ap3s2 protein_coding protein_coding MGP_AJ_T0084646.1 MGP_AJ_G0032378.1 mouse_genomes_project 7 79910585 79948938 - MGP_AJ_P0084646 Ap3s2 protein_coding nonsense_mediated_decay MGP_AJ_T0082227.1 MGP_AJ_G0031806.1 mouse_genomes_project 7 22198534 22210651 + Smg9 protein_coding retained_intron MGP_AJ_T0082228.1 MGP_AJ_G0031806.1 mouse_genomes_project 7 22198534 22225155 + MGP_AJ_P0082228 Smg9 protein_coding protein_coding MGP_AJ_T0082229.1 MGP_AJ_G0031806.1 mouse_genomes_project 7 22198639 22204750 + Smg9 protein_coding retained_intron MGP_AJ_T0082230.1 MGP_AJ_G0031806.1 mouse_genomes_project 7 22198836 22206462 + MGP_AJ_P0082230 Smg9 protein_coding protein_coding MGP_AJ_T0082231.1 MGP_AJ_G0031806.1 mouse_genomes_project 7 22217149 22223307 + Smg9 protein_coding retained_intron MGP_AJ_T0082232.1 MGP_AJ_G0031806.1 mouse_genomes_project 7 22217391 22223307 + MGP_AJ_P0082232 Smg9 protein_coding protein_coding MGP_AJ_T0082233.1 MGP_AJ_G0031806.1 mouse_genomes_project 7 22222583 22225016 + Smg9 protein_coding retained_intron MGP_AJ_T0084042.1 MGP_AJ_G0032245.1 mouse_genomes_project 7 46054286 46075044 - MGP_AJ_P0084042 Tph1 protein_coding protein_coding MGP_AJ_T0084043.1 MGP_AJ_G0032245.1 mouse_genomes_project 7 46054317 46080292 - MGP_AJ_P0084043 Tph1 protein_coding protein_coding MGP_AJ_T0084044.1 MGP_AJ_G0032245.1 mouse_genomes_project 7 46054582 46072968 - MGP_AJ_P0084044 Tph1 protein_coding nonsense_mediated_decay MGP_AJ_T0084045.1 MGP_AJ_G0032245.1 mouse_genomes_project 7 46054582 46072955 - MGP_AJ_P0084045 Tph1 protein_coding nonsense_mediated_decay MGP_AJ_T0084046.1 MGP_AJ_G0032245.1 mouse_genomes_project 7 46057418 46059097 - Tph1 protein_coding retained_intron MGP_AJ_T0084047.1 MGP_AJ_G0032245.1 mouse_genomes_project 7 46064527 46068334 - Tph1 protein_coding retained_intron MGP_AJ_T0084048.1 MGP_AJ_G0032245.1 mouse_genomes_project 7 46067685 46069982 - Tph1 protein_coding retained_intron MGP_AJ_T0084049.1 MGP_AJ_G0032245.1 mouse_genomes_project 7 46068003 46075010 - MGP_AJ_P0084049 Tph1 protein_coding protein_coding MGP_AJ_T0102852.1 MGP_AJ_G0040592.1 mouse_genomes_project 7 48032651 48033999 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0018341.1 MGP_AJ_G0015641.1 mouse_genomes_project 7 42823806 42927906 - 2310002F09Rik processed_transcript antisense MGP_AJ_T0018342.1 MGP_AJ_G0015641.1 mouse_genomes_project 7 42875891 42879219 - 2310002F09Rik processed_transcript antisense MGP_AJ_T0018343.1 MGP_AJ_G0015641.1 mouse_genomes_project 7 42888123 42888728 - 2310002F09Rik processed_transcript TEC MGP_AJ_T0018344.1 MGP_AJ_G0015641.1 mouse_genomes_project 7 42926784 42927919 - 2310002F09Rik processed_transcript antisense MGP_AJ_T0086722.1 MGP_AJ_G0032989.1 mouse_genomes_project 7 127691509 127710534 - MGP_AJ_P0086722 Taok2 protein_coding protein_coding MGP_AJ_T0086723.1 MGP_AJ_G0032989.1 mouse_genomes_project 7 127692227 127694729 - MGP_AJ_P0086723 Taok2 protein_coding unknown_likely_coding MGP_AJ_T0086724.1 MGP_AJ_G0032989.1 mouse_genomes_project 7 127692337 127693087 - Taok2 protein_coding retained_intron MGP_AJ_T0086725.1 MGP_AJ_G0032989.1 mouse_genomes_project 7 127695333 127710534 - MGP_AJ_P0086725 Taok2 protein_coding protein_coding MGP_AJ_T0086726.1 MGP_AJ_G0032989.1 mouse_genomes_project 7 127705625 127708788 - Taok2 protein_coding retained_intron MGP_AJ_T0015956.1 MGP_AJ_G0014051.1 mouse_genomes_project 7 144578871 144579427 + processed_pseudogene processed_pseudogene MGP_AJ_T0082660.1 MGP_AJ_G0031914.1 mouse_genomes_project 7 26397014 26399438 + MGP_AJ_P0082660 Eid2b protein_coding protein_coding MGP_AJ_T0082568.1 MGP_AJ_G0031889.1 mouse_genomes_project 7 25376306 25469808 - MGP_AJ_P0082568 protein_coding protein_coding MGP_AJ_T0082569.1 MGP_AJ_G0031889.1 mouse_genomes_project 7 25376306 25416980 - MGP_AJ_P0082569 protein_coding protein_coding MGP_AJ_T0082570.1 MGP_AJ_G0031889.1 mouse_genomes_project 7 25376306 25419003 - MGP_AJ_P0082570 protein_coding protein_coding MGP_AJ_T0082571.1 MGP_AJ_G0031889.1 mouse_genomes_project 7 25376306 25418648 - MGP_AJ_P0082571 protein_coding protein_coding MGP_AJ_T0082572.1 MGP_AJ_G0031889.1 mouse_genomes_project 7 25376310 25470895 - MGP_AJ_P0082572 protein_coding protein_coding MGP_AJ_T0082573.1 MGP_AJ_G0031889.1 mouse_genomes_project 7 25457441 25470895 - MGP_AJ_P0082573 protein_coding protein_coding MGP_AJ_T0082574.1 MGP_AJ_G0031889.1 mouse_genomes_project 7 25469162 25469726 - protein_coding processed_transcript MGP_AJ_T0015948.1 MGP_AJ_G0014043.1 mouse_genomes_project 7 136886197 136887183 + processed_pseudogene processed_pseudogene MGP_AJ_T0082673.1 MGP_AJ_G0031918.1 mouse_genomes_project 7 26436110 26459831 - MGP_AJ_P0082673 Supt5 protein_coding unknown_likely_coding MGP_AJ_T0082674.1 MGP_AJ_G0031918.1 mouse_genomes_project 7 26436119 26459794 - MGP_AJ_P0082674 Supt5 protein_coding protein_coding MGP_AJ_T0102791.1 MGP_AJ_G0040532.1 mouse_genomes_project 7 14665778 14666769 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0085931.1 MGP_AJ_G0032836.1 mouse_genomes_project 7 110666338 110703134 + MGP_AJ_P0085931 Ipo7 protein_coding protein_coding MGP_AJ_T0086845.1 MGP_AJ_G0033017.1 mouse_genomes_project 7 128207613 128210671 - MGP_AJ_P0086845 protein_coding protein_coding MGP_AJ_T0015752.1 MGP_AJ_G0013847.1 mouse_genomes_project 7 23767645 23768017 - processed_pseudogene processed_pseudogene MGP_AJ_T0008968.1 MGP_AJ_G0007228.1 mouse_genomes_project 7 84632864 84682942 + lincRNA lincRNA MGP_AJ_T0085539.1 MGP_AJ_G0032619.1 mouse_genomes_project 7 103485175 103486281 + MGP_AJ_P0085539 Olfr585 protein_coding protein_coding MGP_AJ_T0084540.1 MGP_AJ_G0032358.1 mouse_genomes_project 7 78778906 78788806 + MGP_AJ_P0084540 Mrps11 protein_coding protein_coding MGP_AJ_T0084541.1 MGP_AJ_G0032358.1 mouse_genomes_project 7 78779100 78787024 + Mrps11 protein_coding retained_intron MGP_AJ_T0084542.1 MGP_AJ_G0032358.1 mouse_genomes_project 7 78779142 78785201 + Mrps11 protein_coding retained_intron MGP_AJ_T0084543.1 MGP_AJ_G0032358.1 mouse_genomes_project 7 78779143 78788806 + MGP_AJ_P0084543 Mrps11 protein_coding nonsense_mediated_decay MGP_AJ_T0084544.1 MGP_AJ_G0032358.1 mouse_genomes_project 7 78779157 78786711 + Mrps11 protein_coding retained_intron MGP_AJ_T0084545.1 MGP_AJ_G0032358.1 mouse_genomes_project 7 78779158 78785093 + Mrps11 protein_coding retained_intron MGP_AJ_T0082837.1 MGP_AJ_G0031960.1 mouse_genomes_project 7 27477317 27490718 + MGP_AJ_P0082837 Dpf1 protein_coding protein_coding MGP_AJ_T0082838.1 MGP_AJ_G0031960.1 mouse_genomes_project 7 27477342 27491037 + MGP_AJ_P0082838 Dpf1 protein_coding protein_coding MGP_AJ_T0082839.1 MGP_AJ_G0031960.1 mouse_genomes_project 7 27481313 27490350 + MGP_AJ_P0082839 Dpf1 protein_coding protein_coding MGP_AJ_T0082840.1 MGP_AJ_G0031960.1 mouse_genomes_project 7 27481401 27490342 + Dpf1 protein_coding retained_intron MGP_AJ_T0082841.1 MGP_AJ_G0031960.1 mouse_genomes_project 7 27481401 27490357 + MGP_AJ_P0082841 Dpf1 protein_coding protein_coding MGP_AJ_T0082842.1 MGP_AJ_G0031960.1 mouse_genomes_project 7 27481407 27491033 + Dpf1 protein_coding processed_transcript MGP_AJ_T0082843.1 MGP_AJ_G0031960.1 mouse_genomes_project 7 27482902 27486673 + MGP_AJ_P0082843 Dpf1 protein_coding protein_coding MGP_AJ_T0082844.1 MGP_AJ_G0031960.1 mouse_genomes_project 7 27482995 27485087 + Dpf1 protein_coding processed_transcript MGP_AJ_T0082845.1 MGP_AJ_G0031960.1 mouse_genomes_project 7 27486394 27489191 + MGP_AJ_P0082845 Dpf1 protein_coding protein_coding MGP_AJ_T0082846.1 MGP_AJ_G0031960.1 mouse_genomes_project 7 27487596 27490017 + Dpf1 protein_coding retained_intron MGP_AJ_T0082958.1 MGP_AJ_G0031989.1 mouse_genomes_project 7 28518319 28523929 + MGP_AJ_P0082958 Alkbh6 protein_coding protein_coding MGP_AJ_T0082959.1 MGP_AJ_G0031989.1 mouse_genomes_project 7 28518379 28523779 + MGP_AJ_P0082959 Alkbh6 protein_coding protein_coding MGP_AJ_T0082960.1 MGP_AJ_G0031989.1 mouse_genomes_project 7 28518379 28523786 + MGP_AJ_P0082960 Alkbh6 protein_coding nonsense_mediated_decay MGP_AJ_T0082961.1 MGP_AJ_G0031989.1 mouse_genomes_project 7 28518390 28523928 + Alkbh6 protein_coding retained_intron MGP_AJ_T0082962.1 MGP_AJ_G0031989.1 mouse_genomes_project 7 28518397 28522128 + Alkbh6 protein_coding retained_intron MGP_AJ_T0082963.1 MGP_AJ_G0031989.1 mouse_genomes_project 7 28518411 28522040 + Alkbh6 protein_coding retained_intron MGP_AJ_T0082964.1 MGP_AJ_G0031989.1 mouse_genomes_project 7 28518415 28520662 + Alkbh6 protein_coding processed_transcript MGP_AJ_T0082965.1 MGP_AJ_G0031989.1 mouse_genomes_project 7 28518456 28522316 + Alkbh6 protein_coding retained_intron MGP_AJ_T0082966.1 MGP_AJ_G0031989.1 mouse_genomes_project 7 28519380 28522281 + Alkbh6 protein_coding retained_intron MGP_AJ_T0082967.1 MGP_AJ_G0031989.1 mouse_genomes_project 7 28520752 28521983 + Alkbh6 protein_coding retained_intron MGP_AJ_T0082968.1 MGP_AJ_G0031989.1 mouse_genomes_project 7 28522294 28523929 + Alkbh6 protein_coding processed_transcript MGP_AJ_T0085780.1 MGP_AJ_G0032746.1 mouse_genomes_project 7 106230868 106235310 - MGP_AJ_P0085780 Mrpl17 protein_coding protein_coding MGP_AJ_T0085781.1 MGP_AJ_G0032746.1 mouse_genomes_project 7 106233867 106235169 - MGP_AJ_P0085781 Mrpl17 protein_coding nonsense_mediated_decay MGP_AJ_T0085782.1 MGP_AJ_G0032746.1 mouse_genomes_project 7 106233890 106235207 - Mrpl17 protein_coding retained_intron MGP_AJ_T0085783.1 MGP_AJ_G0032746.1 mouse_genomes_project 7 106233975 106235210 - Mrpl17 protein_coding processed_transcript MGP_AJ_T0085784.1 MGP_AJ_G0032746.1 mouse_genomes_project 7 106234331 106235239 - MGP_AJ_P0085784 Mrpl17 protein_coding protein_coding MGP_AJ_T0100141.1 MGP_AJ_G0038107.1 mouse_genomes_project 7 26221297 26221403 + Gm24356 snRNA snRNA MGP_AJ_T0082234.1 MGP_AJ_G0031807.1 mouse_genomes_project 7 22234303 22248058 - MGP_AJ_P0082234 Irgc1 protein_coding protein_coding MGP_AJ_T0082235.1 MGP_AJ_G0031807.1 mouse_genomes_project 7 22234303 22237914 - MGP_AJ_P0082235 Irgc1 protein_coding protein_coding MGP_AJ_T0082236.1 MGP_AJ_G0031807.1 mouse_genomes_project 7 22235526 22254447 - MGP_AJ_P0082236 Irgc1 protein_coding protein_coding MGP_AJ_T0082237.1 MGP_AJ_G0031807.1 mouse_genomes_project 7 22252735 22254573 - Irgc1 protein_coding processed_transcript MGP_AJ_T0082238.1 MGP_AJ_G0031807.1 mouse_genomes_project 7 22253140 22254563 - Irgc1 protein_coding processed_transcript MGP_AJ_T0102839.1 MGP_AJ_G0040579.1 mouse_genomes_project 7 47090035 47116610 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0010853.1 MGP_AJ_G0008975.1 mouse_genomes_project 7 28111792 28111852 + Mir7668 miRNA miRNA MGP_AJ_T0102069.1 MGP_AJ_G0039850.1 mouse_genomes_project 7 27747385 27770323 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_AJ_T0102070.1 MGP_AJ_G0039850.1 mouse_genomes_project 7 27749321 27763965 + transcribed_unprocessed_pseudogene processed_transcript MGP_AJ_T0081547.1 MGP_AJ_G0031556.1 mouse_genomes_project 7 2019670 2023725 + MGP_AJ_P0081547 Ccdc106 protein_coding protein_coding MGP_AJ_T0086692.1 MGP_AJ_G0032986.1 mouse_genomes_project 7 127673241 127675351 + MGP_AJ_P0086692 Doc2a protein_coding protein_coding MGP_AJ_T0086693.1 MGP_AJ_G0032986.1 mouse_genomes_project 7 127673378 127678531 + MGP_AJ_P0086693 Doc2a protein_coding protein_coding MGP_AJ_T0086694.1 MGP_AJ_G0032986.1 mouse_genomes_project 7 127673463 127674578 + Doc2a protein_coding processed_transcript MGP_AJ_T0086695.1 MGP_AJ_G0032986.1 mouse_genomes_project 7 127673523 127674518 + MGP_AJ_P0086695 Doc2a protein_coding protein_coding MGP_AJ_T0086696.1 MGP_AJ_G0032986.1 mouse_genomes_project 7 127673551 127677165 + MGP_AJ_P0086696 Doc2a protein_coding protein_coding MGP_AJ_T0086697.1 MGP_AJ_G0032986.1 mouse_genomes_project 7 127673752 127674662 + MGP_AJ_P0086697 Doc2a protein_coding protein_coding MGP_AJ_T0086698.1 MGP_AJ_G0032986.1 mouse_genomes_project 7 127673787 127674661 + MGP_AJ_P0086698 Doc2a protein_coding protein_coding MGP_AJ_T0086699.1 MGP_AJ_G0032986.1 mouse_genomes_project 7 127674080 127675586 + MGP_AJ_P0086699 Doc2a protein_coding protein_coding MGP_AJ_T0086700.1 MGP_AJ_G0032986.1 mouse_genomes_project 7 127674622 127677862 + MGP_AJ_P0086700 Doc2a protein_coding nonsense_mediated_decay MGP_AJ_T0085658.1 MGP_AJ_G0032706.1 mouse_genomes_project 7 105238319 105239270 + MGP_AJ_P0085658 Olfr665 protein_coding protein_coding MGP_AJ_T0084983.1 MGP_AJ_G0032472.1 mouse_genomes_project 7 89839330 89999375 + protein_coding retained_intron MGP_AJ_T0084984.1 MGP_AJ_G0032472.1 mouse_genomes_project 7 89839472 89850298 + protein_coding processed_transcript MGP_AJ_T0084985.1 MGP_AJ_G0032472.1 mouse_genomes_project 7 89839480 90035493 + MGP_AJ_P0084985 protein_coding unknown_likely_coding MGP_AJ_T0084986.1 MGP_AJ_G0032472.1 mouse_genomes_project 7 89839824 90031781 + protein_coding retained_intron MGP_AJ_T0084987.1 MGP_AJ_G0032472.1 mouse_genomes_project 7 89933268 90008313 + protein_coding processed_transcript MGP_AJ_T0084988.1 MGP_AJ_G0032472.1 mouse_genomes_project 7 90011912 90035558 + MGP_AJ_P0084988 protein_coding protein_coding MGP_AJ_T0102916.1 MGP_AJ_G0040656.1 mouse_genomes_project 7 129177101 129177295 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0008847.1 MGP_AJ_G0007145.1 mouse_genomes_project 7 34310785 34312097 + Gm28514 lincRNA lincRNA MGP_AJ_T0082464.1 MGP_AJ_G0031859.1 mouse_genomes_project 7 23681345 23696825 - MGP_AJ_P0082464 Cyp2s1 protein_coding protein_coding MGP_AJ_T0082465.1 MGP_AJ_G0031859.1 mouse_genomes_project 7 23681345 23696565 - MGP_AJ_P0082465 Cyp2s1 protein_coding protein_coding MGP_AJ_T0082466.1 MGP_AJ_G0031859.1 mouse_genomes_project 7 23683018 23696470 - Cyp2s1 protein_coding retained_intron MGP_AJ_T0082467.1 MGP_AJ_G0031859.1 mouse_genomes_project 7 23688194 23695304 - MGP_AJ_P0082467 Cyp2s1 protein_coding protein_coding MGP_AJ_T0008868.1 MGP_AJ_G0007160.1 mouse_genomes_project 7 39380318 39388915 + 4933402C06Rik lincRNA lincRNA MGP_AJ_T0008869.1 MGP_AJ_G0007160.1 mouse_genomes_project 7 39380318 39396596 + 4933402C06Rik lincRNA lincRNA MGP_AJ_T0008899.1 MGP_AJ_G0007184.1 mouse_genomes_project 7 67628992 67647863 - 4833412C05Rik lincRNA lincRNA MGP_AJ_T0010821.1 MGP_AJ_G0008943.1 mouse_genomes_project 7 124916 124974 - Mir290b miRNA miRNA MGP_AJ_T0015788.1 MGP_AJ_G0013883.1 mouse_genomes_project 7 32937336 32937981 - processed_pseudogene processed_pseudogene MGP_AJ_T0084943.1 MGP_AJ_G0032453.1 mouse_genomes_project 7 86672237 86673236 - MGP_AJ_P0084943 Olfr298 protein_coding protein_coding MGP_AJ_T0087035.1 MGP_AJ_G0033051.1 mouse_genomes_project 7 128835664 128839818 - MGP_AJ_P0087035 Pycard protein_coding protein_coding MGP_AJ_T0087036.1 MGP_AJ_G0033051.1 mouse_genomes_project 7 128837596 128839478 - MGP_AJ_P0087036 Pycard protein_coding protein_coding MGP_AJ_T0085085.1 MGP_AJ_G0032497.1 mouse_genomes_project 7 97610630 97618528 + MGP_AJ_P0085085 Ndufc2 protein_coding protein_coding MGP_AJ_T0085086.1 MGP_AJ_G0032497.1 mouse_genomes_project 7 97610730 97617806 + MGP_AJ_P0085086 Ndufc2 protein_coding protein_coding MGP_AJ_T0081770.1 MGP_AJ_G0031656.1 mouse_genomes_project 7 11589368 11591489 - MGP_AJ_P0081770 Obox8 protein_coding protein_coding MGP_AJ_T0005301.1 MGP_AJ_G0004497.1 mouse_genomes_project 7 133517167 133519418 + Gm16764 antisense antisense MGP_AJ_T0005302.1 MGP_AJ_G0004497.1 mouse_genomes_project 7 133517167 133519418 + Gm16764 antisense antisense MGP_AJ_T0005303.1 MGP_AJ_G0004497.1 mouse_genomes_project 7 133517183 133519418 + Gm16764 antisense antisense MGP_AJ_T0083023.1 MGP_AJ_G0032004.1 mouse_genomes_project 7 28760370 28764576 - MGP_AJ_P0083023 Lin37 protein_coding protein_coding MGP_AJ_T0083024.1 MGP_AJ_G0032004.1 mouse_genomes_project 7 28760373 28760951 - Lin37 protein_coding retained_intron MGP_AJ_T0083025.1 MGP_AJ_G0032004.1 mouse_genomes_project 7 28760374 28764768 - MGP_AJ_P0083025 Lin37 protein_coding protein_coding MGP_AJ_T0083026.1 MGP_AJ_G0032004.1 mouse_genomes_project 7 28760789 28764589 - MGP_AJ_P0083026 Lin37 protein_coding protein_coding MGP_AJ_T0083027.1 MGP_AJ_G0032004.1 mouse_genomes_project 7 28762022 28764569 - Lin37 protein_coding processed_transcript MGP_AJ_T0083331.1 MGP_AJ_G0032064.1 mouse_genomes_project 7 33652345 33655282 - Lrp3 protein_coding processed_transcript MGP_AJ_T0083332.1 MGP_AJ_G0032064.1 mouse_genomes_project 7 33653196 33655548 - Lrp3 protein_coding retained_intron MGP_AJ_T0083333.1 MGP_AJ_G0032064.1 mouse_genomes_project 7 33653196 33667833 - MGP_AJ_P0083333 Lrp3 protein_coding protein_coding MGP_AJ_T0083334.1 MGP_AJ_G0032064.1 mouse_genomes_project 7 33653197 33667627 - MGP_AJ_P0083334 Lrp3 protein_coding protein_coding MGP_AJ_T0083300.1 MGP_AJ_G0032058.1 mouse_genomes_project 7 33074622 33090065 - MGP_AJ_P0083300 Kctd15 protein_coding protein_coding MGP_AJ_T0083301.1 MGP_AJ_G0032058.1 mouse_genomes_project 7 33074623 33088505 - MGP_AJ_P0083301 Kctd15 protein_coding protein_coding MGP_AJ_T0083302.1 MGP_AJ_G0032058.1 mouse_genomes_project 7 33074627 33091178 - MGP_AJ_P0083302 Kctd15 protein_coding protein_coding MGP_AJ_T0083303.1 MGP_AJ_G0032058.1 mouse_genomes_project 7 33075790 33084414 - Kctd15 protein_coding processed_transcript MGP_AJ_T0083304.1 MGP_AJ_G0032058.1 mouse_genomes_project 7 33085656 33090056 - MGP_AJ_P0083304 Kctd15 protein_coding protein_coding MGP_AJ_T0083305.1 MGP_AJ_G0032058.1 mouse_genomes_project 7 33088299 33088694 - Kctd15 protein_coding processed_transcript MGP_AJ_T0083306.1 MGP_AJ_G0032058.1 mouse_genomes_project 7 33088299 33088980 - Kctd15 protein_coding processed_transcript MGP_AJ_T0083307.1 MGP_AJ_G0032058.1 mouse_genomes_project 7 33091038 33092402 - Kctd15 protein_coding processed_transcript MGP_AJ_T0085264.1 MGP_AJ_G0032542.1 mouse_genomes_project 7 100654245 100751767 + MGP_AJ_P0085264 C2cd3 protein_coding protein_coding MGP_AJ_T0085265.1 MGP_AJ_G0032542.1 mouse_genomes_project 7 100654245 100752456 + MGP_AJ_P0085265 C2cd3 protein_coding protein_coding MGP_AJ_T0085266.1 MGP_AJ_G0032542.1 mouse_genomes_project 7 100654258 100705674 + MGP_AJ_P0085266 C2cd3 protein_coding nonsense_mediated_decay MGP_AJ_T0085267.1 MGP_AJ_G0032542.1 mouse_genomes_project 7 100654293 100689495 + C2cd3 protein_coding retained_intron MGP_AJ_T0085268.1 MGP_AJ_G0032542.1 mouse_genomes_project 7 100677492 100736788 + MGP_AJ_P0085268 C2cd3 protein_coding protein_coding MGP_AJ_T0085269.1 MGP_AJ_G0032542.1 mouse_genomes_project 7 100702808 100705400 + C2cd3 protein_coding retained_intron MGP_AJ_T0085270.1 MGP_AJ_G0032542.1 mouse_genomes_project 7 100711445 100714635 + MGP_AJ_P0085270 C2cd3 protein_coding nonsense_mediated_decay MGP_AJ_T0085271.1 MGP_AJ_G0032542.1 mouse_genomes_project 7 100712473 100752458 + MGP_AJ_P0085271 C2cd3 protein_coding protein_coding MGP_AJ_T0085272.1 MGP_AJ_G0032542.1 mouse_genomes_project 7 100725706 100727110 + C2cd3 protein_coding retained_intron MGP_AJ_T0085273.1 MGP_AJ_G0032542.1 mouse_genomes_project 7 100731159 100737177 + MGP_AJ_P0085273 C2cd3 protein_coding nonsense_mediated_decay MGP_AJ_T0085274.1 MGP_AJ_G0032542.1 mouse_genomes_project 7 100733683 100737136 + C2cd3 protein_coding retained_intron MGP_AJ_T0085275.1 MGP_AJ_G0032542.1 mouse_genomes_project 7 100746505 100752458 + MGP_AJ_P0085275 C2cd3 protein_coding protein_coding MGP_AJ_T0082124.1 MGP_AJ_G0031768.1 mouse_genomes_project 7 17345794 17348850 - MGP_AJ_P0082124 Apoe protein_coding protein_coding MGP_AJ_T0082125.1 MGP_AJ_G0031768.1 mouse_genomes_project 7 17345952 17348736 - MGP_AJ_P0082125 Apoe protein_coding protein_coding MGP_AJ_T0082126.1 MGP_AJ_G0031768.1 mouse_genomes_project 7 17345957 17348091 - MGP_AJ_P0082126 Apoe protein_coding protein_coding MGP_AJ_T0082127.1 MGP_AJ_G0031768.1 mouse_genomes_project 7 17345957 17348692 - MGP_AJ_P0082127 Apoe protein_coding protein_coding MGP_AJ_T0082128.1 MGP_AJ_G0031768.1 mouse_genomes_project 7 17345957 17348736 - MGP_AJ_P0082128 Apoe protein_coding protein_coding MGP_AJ_T0082129.1 MGP_AJ_G0031768.1 mouse_genomes_project 7 17346305 17348722 - MGP_AJ_P0082129 Apoe protein_coding protein_coding MGP_AJ_T0082130.1 MGP_AJ_G0031768.1 mouse_genomes_project 7 17346306 17348305 - MGP_AJ_P0082130 Apoe protein_coding protein_coding MGP_AJ_T0082131.1 MGP_AJ_G0031768.1 mouse_genomes_project 7 17346529 17347931 - MGP_AJ_P0082131 Apoe protein_coding protein_coding MGP_AJ_T0082132.1 MGP_AJ_G0031768.1 mouse_genomes_project 7 17346925 17348734 - MGP_AJ_P0082132 Apoe protein_coding protein_coding MGP_AJ_T0082133.1 MGP_AJ_G0031768.1 mouse_genomes_project 7 17346941 17347951 - MGP_AJ_P0082133 Apoe protein_coding protein_coding MGP_AJ_T0085656.1 MGP_AJ_G0032704.1 mouse_genomes_project 7 105216381 105219864 + MGP_AJ_P0085656 protein_coding protein_coding MGP_AJ_T0018384.1 MGP_AJ_G0015654.1 mouse_genomes_project 7 73417545 73436718 - 1810026B05Rik processed_transcript lincRNA MGP_AJ_T0018385.1 MGP_AJ_G0015654.1 mouse_genomes_project 7 73422371 73436567 - 1810026B05Rik processed_transcript lincRNA MGP_AJ_T0018386.1 MGP_AJ_G0015654.1 mouse_genomes_project 7 73422372 73436470 - 1810026B05Rik processed_transcript lincRNA MGP_AJ_T0018387.1 MGP_AJ_G0015654.1 mouse_genomes_project 7 73422377 73425200 - 1810026B05Rik processed_transcript retained_intron MGP_AJ_T0018388.1 MGP_AJ_G0015654.1 mouse_genomes_project 7 73422578 73434243 - 1810026B05Rik processed_transcript lincRNA MGP_AJ_T0018389.1 MGP_AJ_G0015654.1 mouse_genomes_project 7 73422599 73436296 - 1810026B05Rik processed_transcript lincRNA MGP_AJ_T0018390.1 MGP_AJ_G0015654.1 mouse_genomes_project 7 73422641 73436571 - 1810026B05Rik processed_transcript lincRNA MGP_AJ_T0018391.1 MGP_AJ_G0015654.1 mouse_genomes_project 7 73433468 73436709 - 1810026B05Rik processed_transcript retained_intron MGP_AJ_T0087481.1 MGP_AJ_G0033154.1 mouse_genomes_project 7 141191424 141242520 + MGP_AJ_P0087481 5830411N06Rik protein_coding protein_coding MGP_AJ_T0087482.1 MGP_AJ_G0033154.1 mouse_genomes_project 7 141191501 141244670 + MGP_AJ_P0087482 5830411N06Rik protein_coding protein_coding MGP_AJ_T0087483.1 MGP_AJ_G0033154.1 mouse_genomes_project 7 141191504 141244670 + MGP_AJ_P0087483 5830411N06Rik protein_coding protein_coding MGP_AJ_T0084244.1 MGP_AJ_G0032299.1 mouse_genomes_project 7 57360549 57774181 + MGP_AJ_P0084244 Gabrb3 protein_coding protein_coding MGP_AJ_T0084245.1 MGP_AJ_G0032299.1 mouse_genomes_project 7 57533666 57773017 + MGP_AJ_P0084245 Gabrb3 protein_coding protein_coding MGP_AJ_T0084246.1 MGP_AJ_G0032299.1 mouse_genomes_project 7 57534310 57774185 + MGP_AJ_P0084246 Gabrb3 protein_coding protein_coding MGP_AJ_T0084247.1 MGP_AJ_G0032299.1 mouse_genomes_project 7 57534321 57709709 + Gabrb3 protein_coding retained_intron MGP_AJ_T0084248.1 MGP_AJ_G0032299.1 mouse_genomes_project 7 57534678 57761753 + MGP_AJ_P0084248 Gabrb3 protein_coding protein_coding MGP_AJ_T0084249.1 MGP_AJ_G0032299.1 mouse_genomes_project 7 57736048 57761698 + Gabrb3 protein_coding retained_intron MGP_AJ_T0102805.1 MGP_AJ_G0040545.1 mouse_genomes_project 7 31894959 31896340 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0008911.1 MGP_AJ_G0007192.1 mouse_genomes_project 7 71247834 71257300 + lincRNA lincRNA MGP_AJ_T0085848.1 MGP_AJ_G0032800.1 mouse_genomes_project 7 108995248 108996195 + MGP_AJ_P0085848 protein_coding protein_coding MGP_AJ_T0002263.1 MGP_AJ_G0002174.1 mouse_genomes_project 7 75933817 75935873 + TEC TEC MGP_AJ_T0085675.1 MGP_AJ_G0032723.1 mouse_genomes_project 7 105703910 105705243 + MGP_AJ_P0085675 Olfr688 protein_coding protein_coding MGP_AJ_T0009038.1 MGP_AJ_G0007272.1 mouse_genomes_project 7 128121312 128123589 + Gm44728 lincRNA lincRNA MGP_AJ_T0009039.1 MGP_AJ_G0007272.1 mouse_genomes_project 7 128121798 128124001 + Gm44728 lincRNA lincRNA MGP_AJ_T0086757.1 MGP_AJ_G0032995.1 mouse_genomes_project 7 127814488 127842218 - MGP_AJ_P0086757 Mvp protein_coding protein_coding MGP_AJ_T0086758.1 MGP_AJ_G0032995.1 mouse_genomes_project 7 127826141 127839462 - MGP_AJ_P0086758 Mvp protein_coding protein_coding MGP_AJ_T0086760.1 MGP_AJ_G0032995.1 mouse_genomes_project 7 127837325 127842147 - Mvp protein_coding retained_intron MGP_AJ_T0005175.1 MGP_AJ_G0004406.1 mouse_genomes_project 7 27302680 27304308 - Gm16282 antisense antisense MGP_AJ_T0010893.1 MGP_AJ_G0009015.1 mouse_genomes_project 7 64120091 64120208 - Mir6416 miRNA miRNA MGP_AJ_T0084057.1 MGP_AJ_G0032248.1 mouse_genomes_project 7 46148479 46152893 - MGP_AJ_P0084057 Saa4 protein_coding protein_coding MGP_AJ_T0085013.1 MGP_AJ_G0032480.1 mouse_genomes_project 7 90612075 90614424 + MGP_AJ_P0085013 Ccdc89 protein_coding protein_coding MGP_AJ_T0100160.1 MGP_AJ_G0038126.1 mouse_genomes_project 7 81762230 81762338 + Gm26149 snRNA snRNA MGP_AJ_T0081561.1 MGP_AJ_G0031562.1 mouse_genomes_project 7 2253028 2305101 - MGP_AJ_P0081561 Nlrp2 protein_coding protein_coding MGP_AJ_T0082791.1 MGP_AJ_G0031948.1 mouse_genomes_project 7 27161637 27289578 - MGP_AJ_P0082791 Ryr1 protein_coding protein_coding MGP_AJ_T0082792.1 MGP_AJ_G0031948.1 mouse_genomes_project 7 27161641 27289578 - MGP_AJ_P0082792 Ryr1 protein_coding protein_coding MGP_AJ_T0082793.1 MGP_AJ_G0031948.1 mouse_genomes_project 7 27204392 27289442 - MGP_AJ_P0082793 Ryr1 protein_coding unknown_likely_coding MGP_AJ_T0005318.1 MGP_AJ_G0004509.1 mouse_genomes_project 7 145573860 145588883 + Faddos antisense antisense MGP_AJ_T0081601.1 MGP_AJ_G0031578.1 mouse_genomes_project 7 3399121 3430377 + MGP_AJ_P0081601 Gm20715 protein_coding nonsense_mediated_decay MGP_AJ_T0084394.1 MGP_AJ_G0032332.1 mouse_genomes_project 7 66482082 66527087 - MGP_AJ_P0084394 Asb7 protein_coding protein_coding MGP_AJ_T0084395.1 MGP_AJ_G0032332.1 mouse_genomes_project 7 66482082 66526376 - MGP_AJ_P0084395 Asb7 protein_coding nonsense_mediated_decay MGP_AJ_T0084396.1 MGP_AJ_G0032332.1 mouse_genomes_project 7 66514517 66526965 - MGP_AJ_P0084396 Asb7 protein_coding protein_coding MGP_AJ_T0085776.1 MGP_AJ_G0032745.1 mouse_genomes_project 7 106176329 106210700 - MGP_AJ_P0085776 Dchs1 protein_coding protein_coding MGP_AJ_T0085777.1 MGP_AJ_G0032745.1 mouse_genomes_project 7 106176330 106210804 - MGP_AJ_P0085777 Dchs1 protein_coding protein_coding MGP_AJ_T0085778.1 MGP_AJ_G0032745.1 mouse_genomes_project 7 106180316 106181230 - Dchs1 protein_coding retained_intron MGP_AJ_T0085779.1 MGP_AJ_G0032745.1 mouse_genomes_project 7 106186794 106210702 - MGP_AJ_P0085779 Dchs1 protein_coding protein_coding MGP_AJ_T0101411.1 MGP_AJ_G0039377.1 mouse_genomes_project 7 44774221 44774375 + Gm22478 snoRNA snoRNA MGP_AJ_T0015711.1 MGP_AJ_G0013806.1 mouse_genomes_project 7 10729704 10730026 + processed_pseudogene processed_pseudogene MGP_AJ_T0005200.1 MGP_AJ_G0004426.1 mouse_genomes_project 7 36158251 36160806 + 4930505M18Rik antisense antisense MGP_AJ_T0083839.1 MGP_AJ_G0032194.1 mouse_genomes_project 7 44724770 44752563 - MGP_AJ_P0083839 Ppfia3 protein_coding protein_coding MGP_AJ_T0083840.1 MGP_AJ_G0032194.1 mouse_genomes_project 7 44724771 44726416 - Ppfia3 protein_coding processed_transcript MGP_AJ_T0083841.1 MGP_AJ_G0032194.1 mouse_genomes_project 7 44724771 44752868 - MGP_AJ_P0083841 Ppfia3 protein_coding protein_coding MGP_AJ_T0083842.1 MGP_AJ_G0032194.1 mouse_genomes_project 7 44724917 44752868 - Ppfia3 protein_coding retained_intron MGP_AJ_T0083843.1 MGP_AJ_G0032194.1 mouse_genomes_project 7 44724919 44745964 - MGP_AJ_P0083843 Ppfia3 protein_coding protein_coding MGP_AJ_T0083844.1 MGP_AJ_G0032194.1 mouse_genomes_project 7 44724925 44726407 - Ppfia3 protein_coding processed_transcript MGP_AJ_T0083845.1 MGP_AJ_G0032194.1 mouse_genomes_project 7 44725466 44726805 - Ppfia3 protein_coding retained_intron MGP_AJ_T0081692.1 MGP_AJ_G0031632.1 mouse_genomes_project 7 10222508 10228068 + MGP_AJ_P0081692 Zfp446 protein_coding protein_coding MGP_AJ_T0081693.1 MGP_AJ_G0031632.1 mouse_genomes_project 7 10222508 10228068 + MGP_AJ_P0081693 Zfp446 protein_coding protein_coding MGP_AJ_T0081694.1 MGP_AJ_G0031632.1 mouse_genomes_project 7 10222508 10228981 + MGP_AJ_P0081694 Zfp446 protein_coding protein_coding MGP_AJ_T0081695.1 MGP_AJ_G0031632.1 mouse_genomes_project 7 10222553 10226135 + Zfp446 protein_coding retained_intron MGP_AJ_T0081696.1 MGP_AJ_G0031632.1 mouse_genomes_project 7 10222903 10228987 + MGP_AJ_P0081696 Zfp446 protein_coding protein_coding MGP_AJ_T0081697.1 MGP_AJ_G0031632.1 mouse_genomes_project 7 10224185 10229012 + Zfp446 protein_coding retained_intron MGP_AJ_T0010862.1 MGP_AJ_G0008984.1 mouse_genomes_project 7 44213243 44213316 + Mir707 miRNA miRNA MGP_AJ_T0085135.1 MGP_AJ_G0032506.1 mouse_genomes_project 7 98138207 98284515 + MGP_AJ_P0085135 Gdpd4 protein_coding protein_coding MGP_AJ_T0085136.1 MGP_AJ_G0032506.1 mouse_genomes_project 7 98190413 98283466 + MGP_AJ_P0085136 Gdpd4 protein_coding protein_coding MGP_AJ_T0008886.1 MGP_AJ_G0007174.1 mouse_genomes_project 7 63837819 63843291 + Gm45052 lincRNA lincRNA MGP_AJ_T0002258.1 MGP_AJ_G0002169.1 mouse_genomes_project 7 73824864 73827064 - TEC TEC MGP_AJ_T0081590.1 MGP_AJ_G0031574.1 mouse_genomes_project 7 3299634 3315029 - MGP_AJ_P0081590 Zfp583 protein_coding protein_coding MGP_AJ_T0081591.1 MGP_AJ_G0031574.1 mouse_genomes_project 7 3300250 3314178 - MGP_AJ_P0081591 Zfp583 protein_coding protein_coding MGP_AJ_T0081592.1 MGP_AJ_G0031574.1 mouse_genomes_project 7 3300279 3313007 - MGP_AJ_P0081592 Zfp583 protein_coding protein_coding MGP_AJ_T0081593.1 MGP_AJ_G0031574.1 mouse_genomes_project 7 3301603 3314994 - Zfp583 protein_coding processed_transcript MGP_AJ_T0081594.1 MGP_AJ_G0031574.1 mouse_genomes_project 7 3306951 3314948 - Zfp583 protein_coding processed_transcript MGP_AJ_T0081595.1 MGP_AJ_G0031574.1 mouse_genomes_project 7 3307405 3315022 - MGP_AJ_P0081595 Zfp583 protein_coding protein_coding MGP_AJ_T0086831.1 MGP_AJ_G0033011.1 mouse_genomes_project 7 128075582 128086358 + MGP_AJ_P0086831 Zfp771 protein_coding protein_coding MGP_AJ_T0086832.1 MGP_AJ_G0033011.1 mouse_genomes_project 7 128076974 128077585 + Zfp771 protein_coding processed_transcript MGP_AJ_T0086833.1 MGP_AJ_G0033011.1 mouse_genomes_project 7 128077060 128085427 + MGP_AJ_P0086833 Zfp771 protein_coding protein_coding MGP_AJ_T0102851.1 MGP_AJ_G0040591.1 mouse_genomes_project 7 47969215 47970098 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0015815.1 MGP_AJ_G0013910.1 mouse_genomes_project 7 42131652 42132188 - processed_pseudogene processed_pseudogene MGP_AJ_T0086337.1 MGP_AJ_G0032928.1 mouse_genomes_project 7 122652564 122709312 + MGP_AJ_P0086337 Scnn1b protein_coding protein_coding MGP_AJ_T0086338.1 MGP_AJ_G0032928.1 mouse_genomes_project 7 122652603 122709314 + MGP_AJ_P0086338 Scnn1b protein_coding nonsense_mediated_decay MGP_AJ_T0086341.1 MGP_AJ_G0032928.1 mouse_genomes_project 7 122688679 122702745 + MGP_AJ_P0086341 Scnn1b protein_coding protein_coding MGP_AJ_T0081658.1 MGP_AJ_G0031619.1 mouse_genomes_project 7 9727370 9744934 + MGP_AJ_P0081658 Zfp606 protein_coding protein_coding MGP_AJ_T0081659.1 MGP_AJ_G0031619.1 mouse_genomes_project 7 9727382 9732602 + Zfp606 protein_coding retained_intron MGP_AJ_T0081660.1 MGP_AJ_G0031619.1 mouse_genomes_project 7 9727440 9744259 + MGP_AJ_P0081660 Zfp606 protein_coding protein_coding MGP_AJ_T0081661.1 MGP_AJ_G0031619.1 mouse_genomes_project 7 9738213 9744250 + Zfp606 protein_coding retained_intron MGP_AJ_T0081782.1 MGP_AJ_G0031663.1 mouse_genomes_project 7 13317894 13332552 - MGP_AJ_P0081782 Crx protein_coding protein_coding MGP_AJ_T0081783.1 MGP_AJ_G0031663.1 mouse_genomes_project 7 13317895 13325297 - MGP_AJ_P0081783 Crx protein_coding protein_coding MGP_AJ_T0081784.1 MGP_AJ_G0031663.1 mouse_genomes_project 7 13319173 13332456 - Crx protein_coding processed_transcript MGP_AJ_T0081785.1 MGP_AJ_G0031663.1 mouse_genomes_project 7 13319173 13332428 - MGP_AJ_P0081785 Crx protein_coding protein_coding MGP_AJ_T0081786.1 MGP_AJ_G0031663.1 mouse_genomes_project 7 13320003 13324163 - MGP_AJ_P0081786 Crx protein_coding protein_coding MGP_AJ_T0085672.1 MGP_AJ_G0032720.1 mouse_genomes_project 7 105536166 105537093 - MGP_AJ_P0085672 protein_coding protein_coding MGP_AJ_T0015876.1 MGP_AJ_G0013971.1 mouse_genomes_project 7 85904051 85904628 - processed_pseudogene processed_pseudogene MGP_AJ_T0085670.1 MGP_AJ_G0032718.1 mouse_genomes_project 7 105472326 105473274 + MGP_AJ_P0085670 Olfr681 protein_coding protein_coding MGP_AJ_T0015909.1 MGP_AJ_G0014004.1 mouse_genomes_project 7 106870632 106871670 - processed_pseudogene processed_pseudogene MGP_AJ_T0082379.1 MGP_AJ_G0031840.1 mouse_genomes_project 7 23147669 23150391 + MGP_AJ_P0082379 Prr19 protein_coding protein_coding MGP_AJ_T0100166.1 MGP_AJ_G0038132.1 mouse_genomes_project 7 95654271 95654378 - Gm25684 snRNA snRNA MGP_AJ_T0087772.1 MGP_AJ_G0033225.1 mouse_genomes_project 7 142989523 143041979 - MGP_AJ_P0087772 Mob2 protein_coding protein_coding MGP_AJ_T0087782.1 MGP_AJ_G0033234.1 mouse_genomes_project 7 143284339 143285716 - MGP_AJ_P0087782 protein_coding protein_coding MGP_AJ_T0087640.1 MGP_AJ_G0033207.1 mouse_genomes_project 7 142332081 142355907 + MGP_AJ_P0087640 Eps8l2 protein_coding protein_coding MGP_AJ_T0087641.1 MGP_AJ_G0033207.1 mouse_genomes_project 7 142332157 142355907 + Eps8l2 protein_coding retained_intron MGP_AJ_T0087642.1 MGP_AJ_G0033207.1 mouse_genomes_project 7 142332188 142348692 + Eps8l2 protein_coding processed_transcript MGP_AJ_T0087643.1 MGP_AJ_G0033207.1 mouse_genomes_project 7 142332205 142348690 + Eps8l2 protein_coding retained_intron MGP_AJ_T0087644.1 MGP_AJ_G0033207.1 mouse_genomes_project 7 142332207 142336192 + MGP_AJ_P0087644 Eps8l2 protein_coding protein_coding MGP_AJ_T0087645.1 MGP_AJ_G0033207.1 mouse_genomes_project 7 142335857 142348827 + Eps8l2 protein_coding retained_intron MGP_AJ_T0087646.1 MGP_AJ_G0033207.1 mouse_genomes_project 7 142350877 142354302 + Eps8l2 protein_coding retained_intron MGP_AJ_T0087647.1 MGP_AJ_G0033207.1 mouse_genomes_project 7 142351084 142354621 + Eps8l2 protein_coding processed_transcript MGP_AJ_T0087648.1 MGP_AJ_G0033207.1 mouse_genomes_project 7 142353132 142354619 + Eps8l2 protein_coding processed_transcript MGP_AJ_T0087649.1 MGP_AJ_G0033207.1 mouse_genomes_project 7 142354423 142355554 + Eps8l2 protein_coding processed_transcript MGP_AJ_T0102815.1 MGP_AJ_G0040555.1 mouse_genomes_project 7 33895494 33898166 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0005147.1 MGP_AJ_G0004386.1 mouse_genomes_project 7 14086970 14105663 + Gm29443 antisense antisense MGP_AJ_T0005148.1 MGP_AJ_G0004386.1 mouse_genomes_project 7 14087186 14105762 + Gm29443 antisense antisense MGP_AJ_T0086057.1 MGP_AJ_G0032864.1 mouse_genomes_project 7 114976314 114988109 - MGP_AJ_P0086057 Psma1 protein_coding protein_coding MGP_AJ_T0086058.1 MGP_AJ_G0032864.1 mouse_genomes_project 7 114976504 114988017 - Psma1 protein_coding processed_transcript MGP_AJ_T0086059.1 MGP_AJ_G0032864.1 mouse_genomes_project 7 114982197 114988045 - Psma1 protein_coding retained_intron MGP_AJ_T0086060.1 MGP_AJ_G0032864.1 mouse_genomes_project 7 114985791 114988034 - Psma1 protein_coding retained_intron MGP_AJ_T0098853.1 MGP_AJ_G0036837.1 mouse_genomes_project 7 81617757 81617884 + Mir1839 scaRNA scaRNA MGP_AJ_T0011698.1 MGP_AJ_G0009820.1 mouse_genomes_project 7 137440412 137440720 - Gm24444 misc_RNA misc_RNA MGP_AJ_T0084887.1 MGP_AJ_G0032425.1 mouse_genomes_project 7 83245356 83252643 + MGP_AJ_P0084887 protein_coding protein_coding MGP_AJ_T0082924.1 MGP_AJ_G0031981.1 mouse_genomes_project 7 28394657 28396498 + MGP_AJ_P0082924 Cox7a1 protein_coding protein_coding MGP_AJ_T0083256.1 MGP_AJ_G0032050.1 mouse_genomes_project 7 32532342 32555955 - MGP_AJ_P0083256 Wtip protein_coding protein_coding MGP_AJ_T0083257.1 MGP_AJ_G0032050.1 mouse_genomes_project 7 32532964 32550652 - Wtip protein_coding processed_transcript MGP_AJ_T0083258.1 MGP_AJ_G0032050.1 mouse_genomes_project 7 32533015 32541865 - Wtip protein_coding retained_intron MGP_AJ_T0083259.1 MGP_AJ_G0032050.1 mouse_genomes_project 7 32533025 32555505 - MGP_AJ_P0083259 Wtip protein_coding nonsense_mediated_decay MGP_AJ_T0102766.1 MGP_AJ_G0040507.1 mouse_genomes_project 7 9358569 9359558 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0102779.1 MGP_AJ_G0040520.1 mouse_genomes_project 7 11786689 11787131 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0008832.1 MGP_AJ_G0007131.1 mouse_genomes_project 7 28054734 28060724 + Gm26554 lincRNA lincRNA MGP_AJ_T0005273.1 MGP_AJ_G0004476.1 mouse_genomes_project 7 117055387 117056269 + Gm44777 antisense antisense MGP_AJ_T0005274.1 MGP_AJ_G0004476.1 mouse_genomes_project 7 117055394 117059468 + Gm44777 antisense antisense MGP_AJ_T0005275.1 MGP_AJ_G0004476.1 mouse_genomes_project 7 117057136 117059788 + Gm44777 antisense antisense MGP_AJ_T0085429.1 MGP_AJ_G0032570.1 mouse_genomes_project 7 102257622 102265850 - MGP_AJ_P0085429 Lrrc51 protein_coding protein_coding MGP_AJ_T0085430.1 MGP_AJ_G0032570.1 mouse_genomes_project 7 102257627 102265412 - MGP_AJ_P0085430 Lrrc51 protein_coding protein_coding MGP_AJ_T0085431.1 MGP_AJ_G0032570.1 mouse_genomes_project 7 102257627 102265863 - MGP_AJ_P0085431 Lrrc51 protein_coding protein_coding MGP_AJ_T0085432.1 MGP_AJ_G0032570.1 mouse_genomes_project 7 102257628 102278406 - MGP_AJ_P0085432 Lrrc51 protein_coding protein_coding MGP_AJ_T0085433.1 MGP_AJ_G0032570.1 mouse_genomes_project 7 102257628 102278468 - MGP_AJ_P0085433 Lrrc51 protein_coding protein_coding MGP_AJ_T0085434.1 MGP_AJ_G0032570.1 mouse_genomes_project 7 102257628 102265837 - MGP_AJ_P0085434 Lrrc51 protein_coding protein_coding MGP_AJ_T0085435.1 MGP_AJ_G0032570.1 mouse_genomes_project 7 102257632 102265821 - MGP_AJ_P0085435 Lrrc51 protein_coding protein_coding MGP_AJ_T0085436.1 MGP_AJ_G0032570.1 mouse_genomes_project 7 102257639 102278495 - Lrrc51 protein_coding processed_transcript MGP_AJ_T0085437.1 MGP_AJ_G0032570.1 mouse_genomes_project 7 102257796 102278402 - MGP_AJ_P0085437 Lrrc51 protein_coding protein_coding MGP_AJ_T0085438.1 MGP_AJ_G0032570.1 mouse_genomes_project 7 102257812 102278430 - MGP_AJ_P0085438 Lrrc51 protein_coding protein_coding MGP_AJ_T0015939.1 MGP_AJ_G0014034.1 mouse_genomes_project 7 128261209 128261381 - processed_pseudogene processed_pseudogene MGP_AJ_T0015741.1 MGP_AJ_G0013836.1 mouse_genomes_project 7 22520167 22520370 - processed_pseudogene processed_pseudogene MGP_AJ_T0102746.1 MGP_AJ_G0040487.1 mouse_genomes_project 7 7445741 7478211 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0081641.1 MGP_AJ_G0031605.1 mouse_genomes_project 7 8869282 8870203 - MGP_AJ_P0081641 Vmn1r72 protein_coding protein_coding MGP_AJ_T0083508.1 MGP_AJ_G0032108.1 mouse_genomes_project 7 42564003 42565180 + MGP_AJ_P0083508 Nkg7 protein_coding protein_coding MGP_AJ_T0083509.1 MGP_AJ_G0032108.1 mouse_genomes_project 7 42564060 42565177 + MGP_AJ_P0083509 Nkg7 protein_coding protein_coding MGP_AJ_T0083510.1 MGP_AJ_G0032108.1 mouse_genomes_project 7 42564434 42565180 + Nkg7 protein_coding retained_intron MGP_AJ_T0085595.1 MGP_AJ_G0032671.1 mouse_genomes_project 7 104461089 104462028 + MGP_AJ_P0085595 Olfr641 protein_coding protein_coding MGP_AJ_T0082017.1 MGP_AJ_G0031736.1 mouse_genomes_project 7 16760814 16782084 + MGP_AJ_P0082017 Fbxo46 protein_coding protein_coding MGP_AJ_T0082018.1 MGP_AJ_G0031736.1 mouse_genomes_project 7 16772696 16779726 + MGP_AJ_P0082018 Fbxo46 protein_coding protein_coding MGP_AJ_T0005284.1 MGP_AJ_G0004482.1 mouse_genomes_project 7 122938374 122959782 - Gm15489 antisense antisense MGP_AJ_T0081833.1 MGP_AJ_G0031678.1 mouse_genomes_project 7 13741597 13743327 - Ccdc9 protein_coding retained_intron MGP_AJ_T0081834.1 MGP_AJ_G0031678.1 mouse_genomes_project 7 13741600 13754335 - MGP_AJ_P0081834 Ccdc9 protein_coding protein_coding MGP_AJ_T0081835.1 MGP_AJ_G0031678.1 mouse_genomes_project 7 13741868 13754366 - MGP_AJ_P0081835 Ccdc9 protein_coding protein_coding MGP_AJ_T0081836.1 MGP_AJ_G0031678.1 mouse_genomes_project 7 13743019 13752604 - MGP_AJ_P0081836 Ccdc9 protein_coding protein_coding MGP_AJ_T0081837.1 MGP_AJ_G0031678.1 mouse_genomes_project 7 13743032 13748246 - Ccdc9 protein_coding retained_intron MGP_AJ_T0081838.1 MGP_AJ_G0031678.1 mouse_genomes_project 7 13743425 13745940 - MGP_AJ_P0081838 Ccdc9 protein_coding protein_coding MGP_AJ_T0081839.1 MGP_AJ_G0031678.1 mouse_genomes_project 7 13743570 13744253 - Ccdc9 protein_coding retained_intron MGP_AJ_T0081840.1 MGP_AJ_G0031678.1 mouse_genomes_project 7 13744149 13748715 - Ccdc9 protein_coding retained_intron MGP_AJ_T0081841.1 MGP_AJ_G0031678.1 mouse_genomes_project 7 13748174 13749355 - Ccdc9 protein_coding processed_transcript MGP_AJ_T0081842.1 MGP_AJ_G0031678.1 mouse_genomes_project 7 13750054 13754325 - MGP_AJ_P0081842 Ccdc9 protein_coding nonsense_mediated_decay MGP_AJ_T0081843.1 MGP_AJ_G0031678.1 mouse_genomes_project 7 13750063 13753081 - MGP_AJ_P0081843 Ccdc9 protein_coding protein_coding MGP_AJ_T0081844.1 MGP_AJ_G0031678.1 mouse_genomes_project 7 13750114 13754319 - MGP_AJ_P0081844 Ccdc9 protein_coding protein_coding MGP_AJ_T0081845.1 MGP_AJ_G0031678.1 mouse_genomes_project 7 13750235 13754318 - Ccdc9 protein_coding retained_intron MGP_AJ_T0081846.1 MGP_AJ_G0031678.1 mouse_genomes_project 7 13750368 13753570 - MGP_AJ_P0081846 Ccdc9 protein_coding protein_coding MGP_AJ_T0086683.1 MGP_AJ_G0032984.1 mouse_genomes_project 7 127623642 127656196 + MGP_AJ_P0086683 Fam57b protein_coding protein_coding MGP_AJ_T0086684.1 MGP_AJ_G0032984.1 mouse_genomes_project 7 127638524 127647827 + Fam57b protein_coding processed_transcript MGP_AJ_T0086685.1 MGP_AJ_G0032984.1 mouse_genomes_project 7 127639877 127643195 + Fam57b protein_coding processed_transcript MGP_AJ_T0086686.1 MGP_AJ_G0032984.1 mouse_genomes_project 7 127642849 127653513 + MGP_AJ_P0086686 Fam57b protein_coding protein_coding MGP_AJ_T0086687.1 MGP_AJ_G0032984.1 mouse_genomes_project 7 127642850 127656200 + MGP_AJ_P0086687 Fam57b protein_coding protein_coding MGP_AJ_T0086688.1 MGP_AJ_G0032984.1 mouse_genomes_project 7 127650068 127656198 + MGP_AJ_P0086688 Fam57b protein_coding protein_coding MGP_AJ_T0085917.1 MGP_AJ_G0032834.1 mouse_genomes_project 7 110539343 110542263 - Dennd5a protein_coding retained_intron MGP_AJ_T0085918.1 MGP_AJ_G0032834.1 mouse_genomes_project 7 110539343 110607469 - MGP_AJ_P0085918 Dennd5a protein_coding protein_coding MGP_AJ_T0085919.1 MGP_AJ_G0032834.1 mouse_genomes_project 7 110539343 110607539 - MGP_AJ_P0085919 Dennd5a protein_coding protein_coding MGP_AJ_T0085920.1 MGP_AJ_G0032834.1 mouse_genomes_project 7 110541943 110543120 - Dennd5a protein_coding retained_intron MGP_AJ_T0085921.1 MGP_AJ_G0032834.1 mouse_genomes_project 7 110545378 110546771 - Dennd5a protein_coding retained_intron MGP_AJ_T0085922.1 MGP_AJ_G0032834.1 mouse_genomes_project 7 110554106 110567364 - Dennd5a protein_coding retained_intron MGP_AJ_T0085923.1 MGP_AJ_G0032834.1 mouse_genomes_project 7 110567977 110571764 - Dennd5a protein_coding processed_transcript MGP_AJ_T0085924.1 MGP_AJ_G0032834.1 mouse_genomes_project 7 110580260 110607392 - Dennd5a protein_coding processed_transcript MGP_AJ_T0002276.1 MGP_AJ_G0002187.1 mouse_genomes_project 7 79526114 79527992 + TEC TEC MGP_AJ_T0015905.1 MGP_AJ_G0014000.1 mouse_genomes_project 7 104398025 104400996 - processed_pseudogene processed_pseudogene MGP_AJ_T0084114.1 MGP_AJ_G0032270.1 mouse_genomes_project 7 48384669 48399767 - MGP_AJ_P0084114 Mrgprx2 protein_coding protein_coding MGP_AJ_T0084115.1 MGP_AJ_G0032270.1 mouse_genomes_project 7 48386676 48396571 - MGP_AJ_P0084115 Mrgprx2 protein_coding protein_coding MGP_AJ_T0085678.1 MGP_AJ_G0032726.1 mouse_genomes_project 7 105747233 105748295 - MGP_AJ_P0085678 Olfr690 protein_coding protein_coding MGP_AJ_T0099097.1 MGP_AJ_G0037069.1 mouse_genomes_project 7 145475514 145475975 - Gm14376 sense_intronic sense_intronic MGP_AJ_T0002272.1 MGP_AJ_G0002183.1 mouse_genomes_project 7 79308935 79312978 + TEC TEC MGP_AJ_T0015861.1 MGP_AJ_G0013956.1 mouse_genomes_project 7 75313471 75313750 - processed_pseudogene processed_pseudogene MGP_AJ_T0005158.1 MGP_AJ_G0004392.1 mouse_genomes_project 7 17460226 17462490 + Gm16175 antisense antisense MGP_AJ_T0084577.1 MGP_AJ_G0032365.1 mouse_genomes_project 7 79283061 79370507 + MGP_AJ_P0084577 Abhd2 protein_coding protein_coding MGP_AJ_T0084578.1 MGP_AJ_G0032365.1 mouse_genomes_project 7 79283116 79350194 + Abhd2 protein_coding processed_transcript MGP_AJ_T0102855.1 MGP_AJ_G0040595.1 mouse_genomes_project 7 48163706 48164691 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0084507.1 MGP_AJ_G0032353.1 mouse_genomes_project 7 75347038 75678295 + MGP_AJ_P0084507 Akap13 protein_coding protein_coding MGP_AJ_T0084508.1 MGP_AJ_G0032353.1 mouse_genomes_project 7 75435251 75678300 + MGP_AJ_P0084508 Akap13 protein_coding unknown_likely_coding MGP_AJ_T0087308.1 MGP_AJ_G0033106.1 mouse_genomes_project 7 134628728 134640863 + MGP_AJ_P0087308 Bccip protein_coding protein_coding MGP_AJ_T0087309.1 MGP_AJ_G0033106.1 mouse_genomes_project 7 134628743 134635164 + Bccip protein_coding retained_intron MGP_AJ_T0087310.1 MGP_AJ_G0033106.1 mouse_genomes_project 7 134628797 134634031 + Bccip protein_coding processed_transcript MGP_AJ_T0087311.1 MGP_AJ_G0033106.1 mouse_genomes_project 7 134634459 134640659 + Bccip protein_coding processed_transcript MGP_AJ_T0087312.1 MGP_AJ_G0033106.1 mouse_genomes_project 7 134637096 134638933 + Bccip protein_coding retained_intron MGP_AJ_T0015778.1 MGP_AJ_G0013873.1 mouse_genomes_project 7 31713440 31713921 + processed_pseudogene processed_pseudogene MGP_AJ_T0101414.1 MGP_AJ_G0039380.1 mouse_genomes_project 7 59287700 59287769 - Gm25499 snoRNA snoRNA MGP_AJ_T0102914.1 MGP_AJ_G0040654.1 mouse_genomes_project 7 106252656 106253705 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0087497.1 MGP_AJ_G0033168.1 mouse_genomes_project 7 141637302 141638262 + MGP_AJ_P0087497 Olfr539 protein_coding protein_coding MGP_AJ_T0008930.1 MGP_AJ_G0007209.1 mouse_genomes_project 7 73659740 73694660 - Gm10619 lincRNA lincRNA MGP_AJ_T0008931.1 MGP_AJ_G0007209.1 mouse_genomes_project 7 73686450 73694732 - Gm10619 lincRNA lincRNA MGP_AJ_T0085424.1 MGP_AJ_G0032568.1 mouse_genomes_project 7 102241149 102246562 - MGP_AJ_P0085424 Tomt protein_coding protein_coding MGP_AJ_T0085426.1 MGP_AJ_G0032568.1 mouse_genomes_project 7 102242594 102249136 - MGP_AJ_P0085426 Tomt protein_coding protein_coding MGP_AJ_T0082869.1 MGP_AJ_G0031964.1 mouse_genomes_project 7 27976621 27992963 + MGP_AJ_P0082869 Zfp30 protein_coding protein_coding MGP_AJ_T0082870.1 MGP_AJ_G0031964.1 mouse_genomes_project 7 27976646 27990172 + Zfp30 protein_coding retained_intron MGP_AJ_T0082871.1 MGP_AJ_G0031964.1 mouse_genomes_project 7 27976816 27992970 + MGP_AJ_P0082871 Zfp30 protein_coding protein_coding MGP_AJ_T0083977.1 MGP_AJ_G0032227.1 mouse_genomes_project 7 45206525 45213182 - MGP_AJ_P0083977 Cyth2 protein_coding nonsense_mediated_decay MGP_AJ_T0083978.1 MGP_AJ_G0032227.1 mouse_genomes_project 7 45206535 45213162 - MGP_AJ_P0083978 Cyth2 protein_coding protein_coding MGP_AJ_T0083979.1 MGP_AJ_G0032227.1 mouse_genomes_project 7 45206647 45212996 - MGP_AJ_P0083979 Cyth2 protein_coding protein_coding MGP_AJ_T0083980.1 MGP_AJ_G0032227.1 mouse_genomes_project 7 45208934 45213152 - Cyth2 protein_coding processed_transcript MGP_AJ_T0083981.1 MGP_AJ_G0032227.1 mouse_genomes_project 7 45209734 45213461 - MGP_AJ_P0083981 Cyth2 protein_coding protein_coding MGP_AJ_T0083982.1 MGP_AJ_G0032227.1 mouse_genomes_project 7 45210403 45213141 - Cyth2 protein_coding processed_transcript MGP_AJ_T0081792.1 MGP_AJ_G0031667.1 mouse_genomes_project 7 13406184 13426708 - MGP_AJ_P0081792 Ehd2 protein_coding protein_coding MGP_AJ_T0081793.1 MGP_AJ_G0031667.1 mouse_genomes_project 7 13416888 13426616 - MGP_AJ_P0081793 Ehd2 protein_coding protein_coding MGP_AJ_T0086794.1 MGP_AJ_G0033004.1 mouse_genomes_project 7 127936755 127951715 - MGP_AJ_P0086794 Qprt protein_coding protein_coding MGP_AJ_T0086795.1 MGP_AJ_G0033004.1 mouse_genomes_project 7 127938632 127951530 - Qprt protein_coding processed_transcript MGP_AJ_T0086796.1 MGP_AJ_G0033004.1 mouse_genomes_project 7 127945278 127951507 - Qprt protein_coding processed_transcript MGP_AJ_T0083403.1 MGP_AJ_G0032076.1 mouse_genomes_project 7 34245357 34276365 - MGP_AJ_P0083403 Zfp507 protein_coding protein_coding MGP_AJ_T0083404.1 MGP_AJ_G0032076.1 mouse_genomes_project 7 34246735 34267416 - MGP_AJ_P0083404 Zfp507 protein_coding protein_coding MGP_AJ_T0083405.1 MGP_AJ_G0032076.1 mouse_genomes_project 7 34248982 34276343 - MGP_AJ_P0083405 Zfp507 protein_coding protein_coding MGP_AJ_T0083406.1 MGP_AJ_G0032076.1 mouse_genomes_project 7 34251833 34252002 - Zfp507 protein_coding processed_transcript MGP_AJ_T0083407.1 MGP_AJ_G0032076.1 mouse_genomes_project 7 34264577 34276362 - MGP_AJ_P0083407 Zfp507 protein_coding protein_coding MGP_AJ_T0083408.1 MGP_AJ_G0032076.1 mouse_genomes_project 7 34274385 34276330 - Zfp507 protein_coding retained_intron MGP_AJ_T0083409.1 MGP_AJ_G0032076.1 mouse_genomes_project 7 34275392 34276379 - Zfp507 protein_coding retained_intron MGP_AJ_T0084851.1 MGP_AJ_G0032417.1 mouse_genomes_project 7 81955203 81979813 + MGP_AJ_P0084851 Tm6sf1 protein_coding protein_coding MGP_AJ_T0084852.1 MGP_AJ_G0032417.1 mouse_genomes_project 7 81955222 81970061 + Tm6sf1 protein_coding retained_intron MGP_AJ_T0084853.1 MGP_AJ_G0032417.1 mouse_genomes_project 7 81955320 81961583 + Tm6sf1 protein_coding processed_transcript MGP_AJ_T0084854.1 MGP_AJ_G0032417.1 mouse_genomes_project 7 81955353 81980176 + MGP_AJ_P0084854 Tm6sf1 protein_coding nonsense_mediated_decay MGP_AJ_T0084855.1 MGP_AJ_G0032417.1 mouse_genomes_project 7 81955651 81974099 + MGP_AJ_P0084855 Tm6sf1 protein_coding unknown_likely_coding MGP_AJ_T0084856.1 MGP_AJ_G0032417.1 mouse_genomes_project 7 81958873 81979157 + MGP_AJ_P0084856 Tm6sf1 protein_coding protein_coding MGP_AJ_T0084857.1 MGP_AJ_G0032417.1 mouse_genomes_project 7 81965916 81968599 + Tm6sf1 protein_coding retained_intron MGP_AJ_T0084858.1 MGP_AJ_G0032417.1 mouse_genomes_project 7 81969676 81979145 + Tm6sf1 protein_coding retained_intron MGP_AJ_T0082027.1 MGP_AJ_G0031740.1 mouse_genomes_project 7 16818001 16848127 + MGP_AJ_P0082027 Eml2 protein_coding protein_coding MGP_AJ_T0082028.1 MGP_AJ_G0031740.1 mouse_genomes_project 7 16823331 16848352 + MGP_AJ_P0082028 Eml2 protein_coding protein_coding MGP_AJ_T0082029.1 MGP_AJ_G0031740.1 mouse_genomes_project 7 16823342 16848348 + MGP_AJ_P0082029 Eml2 protein_coding nonsense_mediated_decay MGP_AJ_T0082030.1 MGP_AJ_G0031740.1 mouse_genomes_project 7 16823365 16848349 + MGP_AJ_P0082030 Eml2 protein_coding protein_coding MGP_AJ_T0082031.1 MGP_AJ_G0031740.1 mouse_genomes_project 7 16823377 16827108 + MGP_AJ_P0082031 Eml2 protein_coding protein_coding MGP_AJ_T0082032.1 MGP_AJ_G0031740.1 mouse_genomes_project 7 16823398 16828548 + MGP_AJ_P0082032 Eml2 protein_coding protein_coding MGP_AJ_T0082033.1 MGP_AJ_G0031740.1 mouse_genomes_project 7 16823493 16827111 + Eml2 protein_coding processed_transcript MGP_AJ_T0082034.1 MGP_AJ_G0031740.1 mouse_genomes_project 7 16823767 16828561 + Eml2 protein_coding retained_intron MGP_AJ_T0015922.1 MGP_AJ_G0014017.1 mouse_genomes_project 7 122930490 122930904 + processed_pseudogene processed_pseudogene MGP_AJ_T0015721.1 MGP_AJ_G0013816.1 mouse_genomes_project 7 11552439 11557083 + processed_pseudogene processed_pseudogene MGP_AJ_T0015860.1 MGP_AJ_G0013955.1 mouse_genomes_project 7 75258007 75258211 + processed_pseudogene processed_pseudogene MGP_AJ_T0082896.1 MGP_AJ_G0031971.1 mouse_genomes_project 7 28157158 28159514 + MGP_AJ_P0082896 protein_coding protein_coding MGP_AJ_T0087863.1 MGP_AJ_G0033245.1 mouse_genomes_project 7 143675308 143676338 - MGP_AJ_P0087863 Ins2 protein_coding protein_coding MGP_AJ_T0087864.1 MGP_AJ_G0033245.1 mouse_genomes_project 7 143675308 143696169 - MGP_AJ_P0087864 Ins2 protein_coding protein_coding MGP_AJ_T0087865.1 MGP_AJ_G0033245.1 mouse_genomes_project 7 143675311 143676379 - MGP_AJ_P0087865 Ins2 protein_coding protein_coding MGP_AJ_T0087866.1 MGP_AJ_G0033245.1 mouse_genomes_project 7 143675311 143676351 - MGP_AJ_P0087866 Ins2 protein_coding protein_coding MGP_AJ_T0087867.1 MGP_AJ_G0033245.1 mouse_genomes_project 7 143675311 143676345 - MGP_AJ_P0087867 Ins2 protein_coding protein_coding MGP_AJ_T0087868.1 MGP_AJ_G0033245.1 mouse_genomes_project 7 143675313 143676370 - MGP_AJ_P0087868 Ins2 protein_coding protein_coding MGP_AJ_T0087869.1 MGP_AJ_G0033245.1 mouse_genomes_project 7 143675361 143676233 - MGP_AJ_P0087869 Ins2 protein_coding protein_coding MGP_AJ_T0087870.1 MGP_AJ_G0033245.1 mouse_genomes_project 7 143675365 143676186 - MGP_AJ_P0087870 Ins2 protein_coding protein_coding MGP_AJ_T0088009.1 MGP_AJ_G0033278.1 mouse_genomes_project 7 145956640 145966578 - MGP_AJ_P0088009 Ccnd1 protein_coding protein_coding MGP_AJ_T0088010.1 MGP_AJ_G0033278.1 mouse_genomes_project 7 145964002 145964905 - Ccnd1 protein_coding retained_intron MGP_AJ_T0010872.1 MGP_AJ_G0008994.1 mouse_genomes_project 7 57524267 57524369 + Mir6389 miRNA miRNA MGP_AJ_T0085644.1 MGP_AJ_G0032693.1 mouse_genomes_project 7 104859653 104860595 + MGP_AJ_P0085644 Olfr651 protein_coding protein_coding MGP_AJ_T0084365.1 MGP_AJ_G0032325.1 mouse_genomes_project 7 65885568 65905387 + MGP_AJ_P0084365 Gm45213 protein_coding protein_coding MGP_AJ_T0005167.1 MGP_AJ_G0004400.1 mouse_genomes_project 7 23224418 23287862 + antisense antisense MGP_AJ_T0005168.1 MGP_AJ_G0004400.1 mouse_genomes_project 7 23224422 23233982 + antisense antisense MGP_AJ_T0005169.1 MGP_AJ_G0004400.1 mouse_genomes_project 7 23233050 23233819 + antisense antisense MGP_AJ_T0086891.1 MGP_AJ_G0033025.1 mouse_genomes_project 7 128371200 128419129 + MGP_AJ_P0086891 protein_coding nonsense_mediated_decay MGP_AJ_T0086893.1 MGP_AJ_G0033025.1 mouse_genomes_project 7 128412134 128415250 + MGP_AJ_P0086893 protein_coding nonsense_mediated_decay MGP_AJ_T0083429.1 MGP_AJ_G0032080.1 mouse_genomes_project 7 36592617 36602462 - MGP_AJ_P0083429 Ccne1 protein_coding protein_coding MGP_AJ_T0083430.1 MGP_AJ_G0032080.1 mouse_genomes_project 7 36593301 36594137 - Ccne1 protein_coding retained_intron MGP_AJ_T0083431.1 MGP_AJ_G0032080.1 mouse_genomes_project 7 36593447 36594005 - Ccne1 protein_coding processed_transcript MGP_AJ_T0083432.1 MGP_AJ_G0032080.1 mouse_genomes_project 7 36595286 36601827 - MGP_AJ_P0083432 Ccne1 protein_coding protein_coding MGP_AJ_T0083433.1 MGP_AJ_G0032080.1 mouse_genomes_project 7 36597799 36602430 - MGP_AJ_P0083433 Ccne1 protein_coding nonsense_mediated_decay MGP_AJ_T0082121.1 MGP_AJ_G0031766.1 mouse_genomes_project 7 17327381 17331186 - MGP_AJ_P0082121 Apoc4 protein_coding protein_coding MGP_AJ_T0005300.1 MGP_AJ_G0004496.1 mouse_genomes_project 7 133071071 133072202 + Gm15677 antisense antisense MGP_AJ_T0082618.1 MGP_AJ_G0031899.1 mouse_genomes_project 7 25691344 25709489 - MGP_AJ_P0082618 Map3k10 protein_coding protein_coding MGP_AJ_T0082619.1 MGP_AJ_G0031899.1 mouse_genomes_project 7 25691633 25709493 - MGP_AJ_P0082619 Map3k10 protein_coding protein_coding MGP_AJ_T0082620.1 MGP_AJ_G0031899.1 mouse_genomes_project 7 25699063 25700013 - Map3k10 protein_coding retained_intron MGP_AJ_T0082621.1 MGP_AJ_G0031899.1 mouse_genomes_project 7 25699085 25709252 - Map3k10 protein_coding retained_intron MGP_AJ_T0082622.1 MGP_AJ_G0031899.1 mouse_genomes_project 7 25703056 25709476 - MGP_AJ_P0082622 Map3k10 protein_coding protein_coding MGP_AJ_T0102853.1 MGP_AJ_G0040593.1 mouse_genomes_project 7 48149198 48154234 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0082088.1 MGP_AJ_G0031755.1 mouse_genomes_project 7 17135005 17142713 + MGP_AJ_P0082088 protein_coding protein_coding MGP_AJ_T0087976.1 MGP_AJ_G0033270.1 mouse_genomes_project 7 145441570 145476727 - MGP_AJ_P0087976 Cttn protein_coding protein_coding MGP_AJ_T0087977.1 MGP_AJ_G0033270.1 mouse_genomes_project 7 145441572 145476991 - MGP_AJ_P0087977 Cttn protein_coding protein_coding MGP_AJ_T0087978.1 MGP_AJ_G0033270.1 mouse_genomes_project 7 145442719 145444176 - Cttn protein_coding retained_intron MGP_AJ_T0087979.1 MGP_AJ_G0033270.1 mouse_genomes_project 7 145444633 145455610 - Cttn protein_coding retained_intron MGP_AJ_T0087980.1 MGP_AJ_G0033270.1 mouse_genomes_project 7 145445866 145451745 - Cttn protein_coding processed_transcript MGP_AJ_T0087981.1 MGP_AJ_G0033270.1 mouse_genomes_project 7 145451642 145458423 - Cttn protein_coding processed_transcript MGP_AJ_T0087982.1 MGP_AJ_G0033270.1 mouse_genomes_project 7 145462299 145466609 - Cttn protein_coding processed_transcript MGP_AJ_T0101401.1 MGP_AJ_G0039367.1 mouse_genomes_project 7 33669571 33669697 + Gm24505 snoRNA snoRNA MGP_AJ_T0008834.1 MGP_AJ_G0007133.1 mouse_genomes_project 7 28857153 28859471 + Gm26610 lincRNA lincRNA MGP_AJ_T0008934.1 MGP_AJ_G0007212.1 mouse_genomes_project 7 74676597 74681859 + Gm30459 lincRNA lincRNA MGP_AJ_T0087777.1 MGP_AJ_G0033229.1 mouse_genomes_project 7 143176002 143176703 - MGP_AJ_P0087777 protein_coding protein_coding MGP_AJ_T0010871.1 MGP_AJ_G0008993.1 mouse_genomes_project 7 54183334 54183521 - Gm25956 miRNA miRNA MGP_AJ_T0086128.1 MGP_AJ_G0032873.1 mouse_genomes_project 7 117052638 117055328 - MGP_AJ_P0086128 Rps13 protein_coding protein_coding MGP_AJ_T0086129.1 MGP_AJ_G0032873.1 mouse_genomes_project 7 117052643 117055266 - MGP_AJ_P0086129 Rps13 protein_coding protein_coding MGP_AJ_T0086130.1 MGP_AJ_G0032873.1 mouse_genomes_project 7 117052644 117054315 - Rps13 protein_coding retained_intron MGP_AJ_T0086131.1 MGP_AJ_G0032873.1 mouse_genomes_project 7 117052645 117055263 - Rps13 protein_coding retained_intron MGP_AJ_T0086132.1 MGP_AJ_G0032873.1 mouse_genomes_project 7 117052645 117055268 - Rps13 protein_coding retained_intron MGP_AJ_T0086133.1 MGP_AJ_G0032873.1 mouse_genomes_project 7 117052645 117055299 - MGP_AJ_P0086133 Rps13 protein_coding nonsense_mediated_decay MGP_AJ_T0086134.1 MGP_AJ_G0032873.1 mouse_genomes_project 7 117053187 117055250 - Rps13 protein_coding retained_intron MGP_AJ_T0086135.1 MGP_AJ_G0032873.1 mouse_genomes_project 7 117054172 117055255 - Rps13 protein_coding retained_intron MGP_AJ_T0085615.1 MGP_AJ_G0032684.1 mouse_genomes_project 7 104660405 104676878 - protein_coding processed_transcript MGP_AJ_T0085616.1 MGP_AJ_G0032684.1 mouse_genomes_project 7 104660408 104689774 - MGP_AJ_P0085616 protein_coding protein_coding MGP_AJ_T0085617.1 MGP_AJ_G0032684.1 mouse_genomes_project 7 104660408 104689775 - MGP_AJ_P0085617 protein_coding protein_coding MGP_AJ_T0085628.1 MGP_AJ_G0032684.1 mouse_genomes_project 7 104679238 104689782 - MGP_AJ_P0085628 protein_coding protein_coding MGP_AJ_T0085630.1 MGP_AJ_G0032684.1 mouse_genomes_project 7 104683017 104689662 - protein_coding processed_transcript MGP_AJ_T0085631.1 MGP_AJ_G0032684.1 mouse_genomes_project 7 104683899 104689785 - protein_coding retained_intron MGP_AJ_T0084633.1 MGP_AJ_G0032373.1 mouse_genomes_project 7 79753429 79760553 - MGP_AJ_P0084633 Pex11a protein_coding protein_coding MGP_AJ_T0084634.1 MGP_AJ_G0032373.1 mouse_genomes_project 7 79754561 79760604 - Pex11a protein_coding processed_transcript MGP_AJ_T0084635.1 MGP_AJ_G0032373.1 mouse_genomes_project 7 79754722 79756197 - Pex11a protein_coding retained_intron MGP_AJ_T0084636.1 MGP_AJ_G0032373.1 mouse_genomes_project 7 79755244 79757829 - Pex11a protein_coding retained_intron MGP_AJ_T0002268.1 MGP_AJ_G0002179.1 mouse_genomes_project 7 78200973 78202063 - TEC TEC MGP_AJ_T0009000.1 MGP_AJ_G0007251.1 mouse_genomes_project 7 115659711 115696318 + A730082K24Rik lincRNA lincRNA MGP_AJ_T0009001.1 MGP_AJ_G0007251.1 mouse_genomes_project 7 115659749 115669724 + A730082K24Rik lincRNA lincRNA MGP_AJ_T0009002.1 MGP_AJ_G0007251.1 mouse_genomes_project 7 115662307 115687800 + A730082K24Rik lincRNA lincRNA MGP_AJ_T0009003.1 MGP_AJ_G0007251.1 mouse_genomes_project 7 115662322 115687751 + A730082K24Rik lincRNA lincRNA MGP_AJ_T0009004.1 MGP_AJ_G0007251.1 mouse_genomes_project 7 115662340 115695223 + A730082K24Rik lincRNA lincRNA MGP_AJ_T0008923.1 MGP_AJ_G0007203.1 mouse_genomes_project 7 73065709 73101174 - Gm30075 lincRNA lincRNA MGP_AJ_T0084932.1 MGP_AJ_G0032443.1 mouse_genomes_project 7 86398972 86420599 - MGP_AJ_P0084932 Vmn2r76 protein_coding protein_coding MGP_AJ_T0087738.1 MGP_AJ_G0033219.1 mouse_genomes_project 7 142564214 142636755 + MGP_AJ_P0087738 Ap2a2 protein_coding protein_coding MGP_AJ_T0087739.1 MGP_AJ_G0033219.1 mouse_genomes_project 7 142564249 142606896 + Ap2a2 protein_coding retained_intron MGP_AJ_T0087740.1 MGP_AJ_G0033219.1 mouse_genomes_project 7 142564571 142602596 + MGP_AJ_P0087740 Ap2a2 protein_coding protein_coding MGP_AJ_T0087505.1 MGP_AJ_G0033174.1 mouse_genomes_project 7 141819109 141821979 + MGP_AJ_P0087505 Urah protein_coding protein_coding MGP_AJ_T0087506.1 MGP_AJ_G0033174.1 mouse_genomes_project 7 141819370 141822058 + MGP_AJ_P0087506 Urah protein_coding protein_coding MGP_AJ_T0087507.1 MGP_AJ_G0033174.1 mouse_genomes_project 7 141819388 141822063 + MGP_AJ_P0087507 Urah protein_coding protein_coding MGP_AJ_T0087508.1 MGP_AJ_G0033174.1 mouse_genomes_project 7 141819425 141821160 + Urah protein_coding retained_intron MGP_AJ_T0084612.1 MGP_AJ_G0032369.1 mouse_genomes_project 7 79605181 79629710 - MGP_AJ_P0084612 Rhcg protein_coding protein_coding MGP_AJ_T0084613.1 MGP_AJ_G0032369.1 mouse_genomes_project 7 79605187 79606748 - MGP_AJ_P0084613 Rhcg protein_coding protein_coding MGP_AJ_T0084614.1 MGP_AJ_G0032369.1 mouse_genomes_project 7 79615737 79619843 - MGP_AJ_P0084614 Rhcg protein_coding protein_coding MGP_AJ_T0082475.1 MGP_AJ_G0031865.1 mouse_genomes_project 7 24236834 24310303 - MGP_AJ_P0082475 Nlrp9c protein_coding protein_coding MGP_AJ_T0082476.1 MGP_AJ_G0031865.1 mouse_genomes_project 7 24284842 24310308 - MGP_AJ_P0082476 Nlrp9c protein_coding protein_coding MGP_AJ_T0082477.1 MGP_AJ_G0031865.1 mouse_genomes_project 7 24293388 24319786 - Nlrp9c protein_coding retained_intron MGP_AJ_T0082478.1 MGP_AJ_G0031865.1 mouse_genomes_project 7 24293388 24319782 - Nlrp9c protein_coding processed_transcript MGP_AJ_T0082479.1 MGP_AJ_G0031865.1 mouse_genomes_project 7 24308331 24319786 - Nlrp9c protein_coding retained_intron MGP_AJ_T0087559.1 MGP_AJ_G0033190.1 mouse_genomes_project 7 142049991 142060837 + MGP_AJ_P0087559 B4galnt4 protein_coding protein_coding MGP_AJ_T0100139.1 MGP_AJ_G0038105.1 mouse_genomes_project 7 16884813 16884973 + Gm25134 snRNA snRNA MGP_AJ_T0086633.1 MGP_AJ_G0032978.1 mouse_genomes_project 7 127585383 127591600 + MGP_AJ_P0086633 Mapk3 protein_coding protein_coding MGP_AJ_T0086634.1 MGP_AJ_G0032978.1 mouse_genomes_project 7 127585383 127590626 + MGP_AJ_P0086634 Mapk3 protein_coding protein_coding MGP_AJ_T0086635.1 MGP_AJ_G0032978.1 mouse_genomes_project 7 127585433 127590625 + MGP_AJ_P0086635 Mapk3 protein_coding protein_coding MGP_AJ_T0086636.1 MGP_AJ_G0032978.1 mouse_genomes_project 7 127585442 127586790 + Mapk3 protein_coding retained_intron MGP_AJ_T0086637.1 MGP_AJ_G0032978.1 mouse_genomes_project 7 127585616 127588940 + Mapk3 protein_coding processed_transcript MGP_AJ_T0086638.1 MGP_AJ_G0032978.1 mouse_genomes_project 7 127586379 127591600 + MGP_AJ_P0086638 Mapk3 protein_coding protein_coding MGP_AJ_T0086639.1 MGP_AJ_G0032978.1 mouse_genomes_project 7 127586531 127590353 + MGP_AJ_P0086639 Mapk3 protein_coding protein_coding MGP_AJ_T0086640.1 MGP_AJ_G0032978.1 mouse_genomes_project 7 127589057 127590141 + Mapk3 protein_coding retained_intron MGP_AJ_T0102763.1 MGP_AJ_G0040504.1 mouse_genomes_project 7 9313213 9314038 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0100163.1 MGP_AJ_G0038129.1 mouse_genomes_project 7 91417889 91417992 + Gm24552 snRNA snRNA MGP_AJ_T0085538.1 MGP_AJ_G0032618.1 mouse_genomes_project 7 103473022 103473921 + MGP_AJ_P0085538 Olfr584 protein_coding protein_coding MGP_AJ_T0087466.1 MGP_AJ_G0033147.1 mouse_genomes_project 7 141066474 141086907 + MGP_AJ_P0087466 Paox protein_coding unknown_likely_coding MGP_AJ_T0087467.1 MGP_AJ_G0033147.1 mouse_genomes_project 7 141074781 141083977 + MGP_AJ_P0087467 Paox protein_coding protein_coding MGP_AJ_T0087468.1 MGP_AJ_G0033147.1 mouse_genomes_project 7 141074832 141083977 + MGP_AJ_P0087468 Paox protein_coding protein_coding MGP_AJ_T0081540.1 MGP_AJ_G0031549.1 mouse_genomes_project 7 1978787 1981767 + MGP_AJ_P0081540 Zfp524 protein_coding protein_coding MGP_AJ_T0005218.1 MGP_AJ_G0004437.1 mouse_genomes_project 7 57322825 57349684 + Gm9962 antisense antisense MGP_AJ_T0015684.1 MGP_AJ_G0013779.1 mouse_genomes_project 7 430550 430851 - processed_pseudogene processed_pseudogene MGP_AJ_T0010897.1 MGP_AJ_G0009019.1 mouse_genomes_project 7 75682706 75682816 - Gm23251 miRNA miRNA MGP_AJ_T0087500.1 MGP_AJ_G0033171.1 mouse_genomes_project 7 141746154 141757391 + MGP_AJ_P0087500 Cyp2e1 protein_coding protein_coding MGP_AJ_T0015932.1 MGP_AJ_G0014027.1 mouse_genomes_project 7 127547820 127548294 + processed_pseudogene processed_pseudogene MGP_AJ_T0008932.1 MGP_AJ_G0007210.1 mouse_genomes_project 7 73704159 73714872 + lincRNA lincRNA MGP_AJ_T0082084.1 MGP_AJ_G0031752.1 mouse_genomes_project 7 17057071 17067376 + MGP_AJ_P0082084 Ckm protein_coding protein_coding MGP_AJ_T0002195.1 MGP_AJ_G0002107.1 mouse_genomes_project 7 14541050 14541974 + TEC TEC MGP_AJ_T0081958.1 MGP_AJ_G0031720.1 mouse_genomes_project 7 16450126 16457656 - MGP_AJ_P0081958 Psg17 protein_coding protein_coding MGP_AJ_T0015746.1 MGP_AJ_G0013841.1 mouse_genomes_project 7 23269901 23270853 - processed_pseudogene processed_pseudogene MGP_AJ_T0009064.1 MGP_AJ_G0007291.1 mouse_genomes_project 7 140913665 140914700 - Gm2044 lincRNA lincRNA MGP_AJ_T0085817.1 MGP_AJ_G0032775.1 mouse_genomes_project 7 107803736 107805212 + MGP_AJ_P0085817 Rbmxl2 protein_coding protein_coding MGP_AJ_T0098724.1 MGP_AJ_G0036708.1 mouse_genomes_project 7 66208757 66208847 - Gm23957 rRNA rRNA MGP_AJ_T0002227.1 MGP_AJ_G0002139.1 mouse_genomes_project 7 49383086 49385085 + TEC TEC MGP_AJ_T0081347.1 MGP_AJ_G0031510.1 mouse_genomes_project 7 899741 953869 - MGP_AJ_P0081347 Lair1 protein_coding protein_coding MGP_AJ_T0081348.1 MGP_AJ_G0031510.1 mouse_genomes_project 7 906265 953894 - MGP_AJ_P0081348 Lair1 protein_coding protein_coding MGP_AJ_T0081349.1 MGP_AJ_G0031510.1 mouse_genomes_project 7 907251 953864 - MGP_AJ_P0081349 Lair1 protein_coding protein_coding MGP_AJ_T0081350.1 MGP_AJ_G0031510.1 mouse_genomes_project 7 908172 953851 - MGP_AJ_P0081350 Lair1 protein_coding nonsense_mediated_decay MGP_AJ_T0081351.1 MGP_AJ_G0031510.1 mouse_genomes_project 7 908199 953829 - MGP_AJ_P0081351 Lair1 protein_coding nonsense_mediated_decay MGP_AJ_T0081352.1 MGP_AJ_G0031510.1 mouse_genomes_project 7 908359 923495 - Lair1 protein_coding processed_transcript MGP_AJ_T0081353.1 MGP_AJ_G0031510.1 mouse_genomes_project 7 908765 953806 - MGP_AJ_P0081353 Lair1 protein_coding nonsense_mediated_decay MGP_AJ_T0081354.1 MGP_AJ_G0031510.1 mouse_genomes_project 7 908855 953831 - MGP_AJ_P0081354 Lair1 protein_coding protein_coding MGP_AJ_T0081355.1 MGP_AJ_G0031510.1 mouse_genomes_project 7 908855 953831 - MGP_AJ_P0081355 Lair1 protein_coding protein_coding MGP_AJ_T0081356.1 MGP_AJ_G0031510.1 mouse_genomes_project 7 923649 953838 - Lair1 protein_coding processed_transcript MGP_AJ_T0083784.1 MGP_AJ_G0032175.1 mouse_genomes_project 7 44424476 44432510 - MGP_AJ_P0083784 Prrg2 protein_coding protein_coding MGP_AJ_T0086169.1 MGP_AJ_G0032880.1 mouse_genomes_project 7 119117339 119181421 - MGP_AJ_P0086169 Syt17 protein_coding protein_coding MGP_AJ_T0086170.1 MGP_AJ_G0032880.1 mouse_genomes_project 7 119117340 119180442 - Syt17 protein_coding retained_intron MGP_AJ_T0086171.1 MGP_AJ_G0032880.1 mouse_genomes_project 7 119117342 119186061 - MGP_AJ_P0086171 Syt17 protein_coding protein_coding MGP_AJ_T0086172.1 MGP_AJ_G0032880.1 mouse_genomes_project 7 119144767 119186029 - MGP_AJ_P0086172 Syt17 protein_coding protein_coding MGP_AJ_T0084850.1 MGP_AJ_G0032416.1 mouse_genomes_project 7 81951732 81951994 - MGP_AJ_P0084850 Gm10160 protein_coding protein_coding MGP_AJ_T0015822.1 MGP_AJ_G0013917.1 mouse_genomes_project 7 43633031 43633979 - processed_pseudogene processed_pseudogene MGP_AJ_T0081944.1 MGP_AJ_G0031711.1 mouse_genomes_project 7 15790327 15796215 - MGP_AJ_P0081944 protein_coding protein_coding MGP_AJ_T0002206.1 MGP_AJ_G0002118.1 mouse_genomes_project 7 35181916 35182838 + TEC TEC MGP_AJ_T0081929.1 MGP_AJ_G0031701.1 mouse_genomes_project 7 14557110 14580724 + Psg16 protein_coding retained_intron MGP_AJ_T0081930.1 MGP_AJ_G0031701.1 mouse_genomes_project 7 14573171 14579201 + MGP_AJ_P0081930 Psg16 protein_coding protein_coding MGP_AJ_T0081931.1 MGP_AJ_G0031701.1 mouse_genomes_project 7 14575656 14583691 + MGP_AJ_P0081931 Psg16 protein_coding protein_coding MGP_AJ_T0098730.1 MGP_AJ_G0036714.1 mouse_genomes_project 7 117350720 117350841 - n-R5s157 rRNA rRNA MGP_AJ_T0018339.1 MGP_AJ_G0015639.1 mouse_genomes_project 7 28846735 28872263 - Gm21982 processed_transcript retained_intron MGP_AJ_T0085790.1 MGP_AJ_G0032750.1 mouse_genomes_project 7 107291008 107291956 - MGP_AJ_P0085790 Olfr694 protein_coding protein_coding MGP_AJ_T0085324.1 MGP_AJ_G0032552.1 mouse_genomes_project 7 101161668 101221994 - MGP_AJ_P0085324 Arhgef17 protein_coding protein_coding MGP_AJ_T0085325.1 MGP_AJ_G0032552.1 mouse_genomes_project 7 101161698 101186595 - MGP_AJ_P0085325 Arhgef17 protein_coding unknown_likely_coding MGP_AJ_T0084440.1 MGP_AJ_G0032339.1 mouse_genomes_project 7 67489194 67514654 + Ttc23 protein_coding retained_intron MGP_AJ_T0084441.1 MGP_AJ_G0032339.1 mouse_genomes_project 7 67489194 67570664 + MGP_AJ_P0084441 Ttc23 protein_coding protein_coding MGP_AJ_T0084442.1 MGP_AJ_G0032339.1 mouse_genomes_project 7 67489209 67570666 + MGP_AJ_P0084442 Ttc23 protein_coding protein_coding MGP_AJ_T0084443.1 MGP_AJ_G0032339.1 mouse_genomes_project 7 67489234 67570666 + Ttc23 protein_coding processed_transcript MGP_AJ_T0084444.1 MGP_AJ_G0032339.1 mouse_genomes_project 7 67489238 67490980 + Ttc23 protein_coding processed_transcript MGP_AJ_T0084445.1 MGP_AJ_G0032339.1 mouse_genomes_project 7 67489244 67502543 + Ttc23 protein_coding processed_transcript MGP_AJ_T0084446.1 MGP_AJ_G0032339.1 mouse_genomes_project 7 67490942 67523009 + Ttc23 protein_coding processed_transcript MGP_AJ_T0084447.1 MGP_AJ_G0032339.1 mouse_genomes_project 7 67496981 67523259 + Ttc23 protein_coding processed_transcript MGP_AJ_T0084448.1 MGP_AJ_G0032339.1 mouse_genomes_project 7 67497251 67570663 + MGP_AJ_P0084448 Ttc23 protein_coding protein_coding MGP_AJ_T0084449.1 MGP_AJ_G0032339.1 mouse_genomes_project 7 67502701 67574146 + MGP_AJ_P0084449 Ttc23 protein_coding unknown_likely_coding MGP_AJ_T0084450.1 MGP_AJ_G0032339.1 mouse_genomes_project 7 67508743 67512060 + Ttc23 protein_coding processed_transcript MGP_AJ_T0084451.1 MGP_AJ_G0032339.1 mouse_genomes_project 7 67512078 67541869 + Ttc23 protein_coding processed_transcript MGP_AJ_T0084452.1 MGP_AJ_G0032339.1 mouse_genomes_project 7 67523232 67570142 + Ttc23 protein_coding processed_transcript MGP_AJ_T0084453.1 MGP_AJ_G0032339.1 mouse_genomes_project 7 67569350 67570104 + Ttc23 protein_coding processed_transcript MGP_AJ_T0102860.1 MGP_AJ_G0040600.1 mouse_genomes_project 7 84901033 84902048 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0008816.1 MGP_AJ_G0007117.1 mouse_genomes_project 7 14352071 14355612 - 9330104G04Rik lincRNA lincRNA MGP_AJ_T0008817.1 MGP_AJ_G0007117.1 mouse_genomes_project 7 14353668 14355612 - 9330104G04Rik lincRNA lincRNA MGP_AJ_T0005181.1 MGP_AJ_G0004411.1 mouse_genomes_project 7 28770260 28770880 - antisense antisense MGP_AJ_T0015697.1 MGP_AJ_G0013792.1 mouse_genomes_project 7 1572489 1573227 + processed_pseudogene processed_pseudogene MGP_AJ_T0085513.1 MGP_AJ_G0032595.1 mouse_genomes_project 7 102987249 102988203 + MGP_AJ_P0085513 Olfr554 protein_coding protein_coding MGP_AJ_T0084647.1 MGP_AJ_G0032379.1 mouse_genomes_project 7 79953628 79963135 - MGP_AJ_P0084647 Arpin protein_coding protein_coding MGP_AJ_T0015955.1 MGP_AJ_G0014050.1 mouse_genomes_project 7 143750278 143750875 - processed_pseudogene processed_pseudogene MGP_AJ_T0083487.1 MGP_AJ_G0032101.1 mouse_genomes_project 7 42285171 42285294 + MGP_AJ_P0083487 protein_coding protein_coding MGP_AJ_T0102756.1 MGP_AJ_G0040497.1 mouse_genomes_project 7 9176796 9177084 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0087545.1 MGP_AJ_G0033183.1 mouse_genomes_project 7 141925286 141931552 + MGP_AJ_P0087545 Athl1 protein_coding nonsense_mediated_decay MGP_AJ_T0087546.1 MGP_AJ_G0033183.1 mouse_genomes_project 7 141925461 141931554 + Athl1 protein_coding retained_intron MGP_AJ_T0087547.1 MGP_AJ_G0033183.1 mouse_genomes_project 7 141925466 141927008 + Athl1 protein_coding processed_transcript MGP_AJ_T0087548.1 MGP_AJ_G0033183.1 mouse_genomes_project 7 141925476 141931560 + MGP_AJ_P0087548 Athl1 protein_coding protein_coding MGP_AJ_T0087549.1 MGP_AJ_G0033183.1 mouse_genomes_project 7 141926205 141930740 + MGP_AJ_P0087549 Athl1 protein_coding nonsense_mediated_decay MGP_AJ_T0087550.1 MGP_AJ_G0033183.1 mouse_genomes_project 7 141926431 141931556 + MGP_AJ_P0087550 Athl1 protein_coding protein_coding MGP_AJ_T0085758.1 MGP_AJ_G0032742.1 mouse_genomes_project 7 106156538 106162865 + MGP_AJ_P0085758 Ilk protein_coding protein_coding MGP_AJ_T0085759.1 MGP_AJ_G0032742.1 mouse_genomes_project 7 106156617 106162858 + Ilk protein_coding retained_intron MGP_AJ_T0085760.1 MGP_AJ_G0032742.1 mouse_genomes_project 7 106156671 106162865 + MGP_AJ_P0085760 Ilk protein_coding protein_coding MGP_AJ_T0085761.1 MGP_AJ_G0032742.1 mouse_genomes_project 7 106156679 106160983 + MGP_AJ_P0085761 Ilk protein_coding protein_coding MGP_AJ_T0085762.1 MGP_AJ_G0032742.1 mouse_genomes_project 7 106157047 106161301 + Ilk protein_coding retained_intron MGP_AJ_T0085763.1 MGP_AJ_G0032742.1 mouse_genomes_project 7 106157069 106161415 + Ilk protein_coding retained_intron MGP_AJ_T0085765.1 MGP_AJ_G0032742.1 mouse_genomes_project 7 106160127 106161704 + Ilk protein_coding retained_intron MGP_AJ_T0085766.1 MGP_AJ_G0032742.1 mouse_genomes_project 7 106160450 106161114 + Ilk protein_coding retained_intron MGP_AJ_T0085767.1 MGP_AJ_G0032742.1 mouse_genomes_project 7 106160450 106161848 + MGP_AJ_P0085767 Ilk protein_coding protein_coding MGP_AJ_T0085768.1 MGP_AJ_G0032742.1 mouse_genomes_project 7 106160911 106161850 + Ilk protein_coding retained_intron MGP_AJ_T0085769.1 MGP_AJ_G0032742.1 mouse_genomes_project 7 106161121 106162036 + Ilk protein_coding retained_intron MGP_AJ_T0085770.1 MGP_AJ_G0032742.1 mouse_genomes_project 7 106161522 106162716 + Ilk protein_coding retained_intron MGP_AJ_T0085771.1 MGP_AJ_G0032742.1 mouse_genomes_project 7 106161720 106162597 + Ilk protein_coding processed_transcript MGP_AJ_T0084166.1 MGP_AJ_G0032284.1 mouse_genomes_project 7 51552766 51601991 + MGP_AJ_P0084166 Slc17a6 protein_coding protein_coding MGP_AJ_T0015692.1 MGP_AJ_G0013787.1 mouse_genomes_project 7 1284724 1284902 + processed_pseudogene processed_pseudogene MGP_AJ_T0008964.1 MGP_AJ_G0007226.1 mouse_genomes_project 7 82945334 82954192 + 1700010L04Rik lincRNA lincRNA MGP_AJ_T0008965.1 MGP_AJ_G0007226.1 mouse_genomes_project 7 82950598 82954191 + 1700010L04Rik lincRNA lincRNA MGP_AJ_T0008966.1 MGP_AJ_G0007226.1 mouse_genomes_project 7 82950608 82953747 + 1700010L04Rik lincRNA lincRNA MGP_AJ_T0083760.1 MGP_AJ_G0032162.1 mouse_genomes_project 7 44226447 44233176 - MGP_AJ_P0083760 Ptov1 protein_coding protein_coding MGP_AJ_T0087804.1 MGP_AJ_G0033239.1 mouse_genomes_project 7 143432557 143435160 + MGP_AJ_P0087804 Tnni2 protein_coding protein_coding MGP_AJ_T0087805.1 MGP_AJ_G0033239.1 mouse_genomes_project 7 143432565 143434786 + MGP_AJ_P0087805 Tnni2 protein_coding protein_coding MGP_AJ_T0087806.1 MGP_AJ_G0033239.1 mouse_genomes_project 7 143433079 143435118 + MGP_AJ_P0087806 Tnni2 protein_coding protein_coding MGP_AJ_T0087807.1 MGP_AJ_G0033239.1 mouse_genomes_project 7 143433657 143435158 + Tnni2 protein_coding retained_intron MGP_AJ_T0087808.1 MGP_AJ_G0033239.1 mouse_genomes_project 7 143433729 143434609 + Tnni2 protein_coding retained_intron MGP_AJ_T0087809.1 MGP_AJ_G0033239.1 mouse_genomes_project 7 143433920 143435155 + MGP_AJ_P0087809 Tnni2 protein_coding protein_coding MGP_AJ_T0005188.1 MGP_AJ_G0004417.1 mouse_genomes_project 7 29399380 29402556 + G630030J09Rik antisense antisense MGP_AJ_T0015878.1 MGP_AJ_G0013973.1 mouse_genomes_project 7 87092372 87093311 - processed_pseudogene processed_pseudogene MGP_AJ_T0087653.1 MGP_AJ_G0033209.1 mouse_genomes_project 7 142401428 142407384 - Pddc1 protein_coding retained_intron MGP_AJ_T0087654.1 MGP_AJ_G0033209.1 mouse_genomes_project 7 142401477 142402625 - Pddc1 protein_coding retained_intron MGP_AJ_T0087655.1 MGP_AJ_G0033209.1 mouse_genomes_project 7 142401477 142407430 - MGP_AJ_P0087655 Pddc1 protein_coding protein_coding MGP_AJ_T0087656.1 MGP_AJ_G0033209.1 mouse_genomes_project 7 142401479 142407372 - Pddc1 protein_coding retained_intron MGP_AJ_T0087657.1 MGP_AJ_G0033209.1 mouse_genomes_project 7 142404137 142407359 - Pddc1 protein_coding retained_intron MGP_AJ_T0087658.1 MGP_AJ_G0033209.1 mouse_genomes_project 7 142404844 142407370 - Pddc1 protein_coding retained_intron MGP_AJ_T0087991.1 MGP_AJ_G0033273.1 mouse_genomes_project 7 145596448 145746737 - MGP_AJ_P0087991 Ano1 protein_coding protein_coding MGP_AJ_T0087992.1 MGP_AJ_G0033273.1 mouse_genomes_project 7 145596448 145746714 - MGP_AJ_P0087992 Ano1 protein_coding protein_coding MGP_AJ_T0087993.1 MGP_AJ_G0033273.1 mouse_genomes_project 7 145596452 145746763 - MGP_AJ_P0087993 Ano1 protein_coding protein_coding MGP_AJ_T0087994.1 MGP_AJ_G0033273.1 mouse_genomes_project 7 145603339 145616275 - Ano1 protein_coding retained_intron MGP_AJ_T0087995.1 MGP_AJ_G0033273.1 mouse_genomes_project 7 145629622 145678181 - MGP_AJ_P0087995 Ano1 protein_coding protein_coding MGP_AJ_T0087996.1 MGP_AJ_G0033273.1 mouse_genomes_project 7 145658553 145760191 - MGP_AJ_P0087996 Ano1 protein_coding protein_coding MGP_AJ_T0087997.1 MGP_AJ_G0033273.1 mouse_genomes_project 7 145662153 145678178 - Ano1 protein_coding retained_intron MGP_AJ_T0087998.1 MGP_AJ_G0033273.1 mouse_genomes_project 7 145663659 145687652 - MGP_AJ_P0087998 Ano1 protein_coding protein_coding MGP_AJ_T0087167.1 MGP_AJ_G0033073.1 mouse_genomes_project 7 131239832 131365718 - MGP_AJ_P0087167 Ate1 protein_coding unknown_likely_coding MGP_AJ_T0087168.1 MGP_AJ_G0033073.1 mouse_genomes_project 7 131239872 131365787 - MGP_AJ_P0087168 Ate1 protein_coding protein_coding MGP_AJ_T0087169.1 MGP_AJ_G0033073.1 mouse_genomes_project 7 131239872 131365796 - MGP_AJ_P0087169 Ate1 protein_coding protein_coding MGP_AJ_T0087170.1 MGP_AJ_G0033073.1 mouse_genomes_project 7 131242904 131366218 - MGP_AJ_P0087170 Ate1 protein_coding protein_coding MGP_AJ_T0087171.1 MGP_AJ_G0033073.1 mouse_genomes_project 7 131242904 131366218 - MGP_AJ_P0087171 Ate1 protein_coding protein_coding MGP_AJ_T0087200.1 MGP_AJ_G0033079.1 mouse_genomes_project 7 132042342 132051209 - MGP_AJ_P0087200 4933402N03Rik protein_coding protein_coding MGP_AJ_T0087344.1 MGP_AJ_G0033115.1 mouse_genomes_project 7 136346773 136350022 + MGP_AJ_P0087344 Foxi2 protein_coding protein_coding MGP_AJ_T0085329.1 MGP_AJ_G0032555.1 mouse_genomes_project 7 101402674 101582781 + MGP_AJ_P0085329 Fchsd2 protein_coding protein_coding MGP_AJ_T0085330.1 MGP_AJ_G0032555.1 mouse_genomes_project 7 101402675 101499188 + Fchsd2 protein_coding processed_transcript MGP_AJ_T0085331.1 MGP_AJ_G0032555.1 mouse_genomes_project 7 101402680 101582804 + MGP_AJ_P0085331 Fchsd2 protein_coding protein_coding MGP_AJ_T0085332.1 MGP_AJ_G0032555.1 mouse_genomes_project 7 101402704 101495496 + Fchsd2 protein_coding retained_intron MGP_AJ_T0085333.1 MGP_AJ_G0032555.1 mouse_genomes_project 7 101402779 101486306 + Fchsd2 protein_coding processed_transcript MGP_AJ_T0085334.1 MGP_AJ_G0032555.1 mouse_genomes_project 7 101402781 101434458 + Fchsd2 protein_coding retained_intron MGP_AJ_T0085335.1 MGP_AJ_G0032555.1 mouse_genomes_project 7 101539854 101550455 + Fchsd2 protein_coding retained_intron MGP_AJ_T0008885.1 MGP_AJ_G0007173.1 mouse_genomes_project 7 63206763 63303948 - 4930554H23Rik lincRNA lincRNA MGP_AJ_T0002191.1 MGP_AJ_G0002103.1 mouse_genomes_project 7 245217 245552 + TEC TEC MGP_AJ_T0081733.1 MGP_AJ_G0031644.1 mouse_genomes_project 7 10515293 10535041 - MGP_AJ_P0081733 6330408A02Rik protein_coding protein_coding MGP_AJ_T0081734.1 MGP_AJ_G0031644.1 mouse_genomes_project 7 10515293 10534502 - MGP_AJ_P0081734 6330408A02Rik protein_coding protein_coding MGP_AJ_T0081735.1 MGP_AJ_G0031644.1 mouse_genomes_project 7 10515294 10535079 - MGP_AJ_P0081735 6330408A02Rik protein_coding protein_coding MGP_AJ_T0081736.1 MGP_AJ_G0031644.1 mouse_genomes_project 7 10522067 10535079 - 6330408A02Rik protein_coding retained_intron MGP_AJ_T0081737.1 MGP_AJ_G0031644.1 mouse_genomes_project 7 10529590 10535028 - 6330408A02Rik protein_coding retained_intron MGP_AJ_T0081738.1 MGP_AJ_G0031644.1 mouse_genomes_project 7 10529699 10534780 - 6330408A02Rik protein_coding retained_intron MGP_AJ_T0081739.1 MGP_AJ_G0031644.1 mouse_genomes_project 7 10533637 10535020 - MGP_AJ_P0081739 6330408A02Rik protein_coding protein_coding MGP_AJ_T0083541.1 MGP_AJ_G0032116.1 mouse_genomes_project 7 42689207 42702413 + MGP_AJ_P0083541 Zfp658 protein_coding protein_coding MGP_AJ_T0083542.1 MGP_AJ_G0032116.1 mouse_genomes_project 7 42691735 42701918 + MGP_AJ_P0083542 Zfp658 protein_coding protein_coding MGP_AJ_T0101445.1 MGP_AJ_G0039411.1 mouse_genomes_project 7 113297703 113297833 - Gm24154 snoRNA snoRNA MGP_AJ_T0015723.1 MGP_AJ_G0013818.1 mouse_genomes_project 7 13971581 13972353 + processed_pseudogene processed_pseudogene MGP_AJ_T0084464.1 MGP_AJ_G0032346.1 mouse_genomes_project 7 71958635 72192482 - MGP_AJ_P0084464 Mctp2 protein_coding protein_coding MGP_AJ_T0084465.1 MGP_AJ_G0032346.1 mouse_genomes_project 7 71961218 71991026 - MGP_AJ_P0084465 Mctp2 protein_coding protein_coding MGP_AJ_T0084466.1 MGP_AJ_G0032346.1 mouse_genomes_project 7 72002155 72041726 - MGP_AJ_P0084466 Mctp2 protein_coding nonsense_mediated_decay MGP_AJ_T0084467.1 MGP_AJ_G0032346.1 mouse_genomes_project 7 72105195 72109187 - Mctp2 protein_coding retained_intron MGP_AJ_T0084468.1 MGP_AJ_G0032346.1 mouse_genomes_project 7 72134986 72192482 - Mctp2 protein_coding retained_intron MGP_AJ_T0082472.1 MGP_AJ_G0031862.1 mouse_genomes_project 7 24077881 24114097 + MGP_AJ_P0082472 Cyp2b9 protein_coding protein_coding MGP_AJ_T0081344.1 MGP_AJ_G0031507.1 mouse_genomes_project 7 651374 660572 - MGP_AJ_P0081344 protein_coding protein_coding MGP_AJ_T0087522.1 MGP_AJ_G0033179.1 mouse_genomes_project 7 141847757 141865956 - MGP_AJ_P0087522 Sirt3 protein_coding protein_coding MGP_AJ_T0087523.1 MGP_AJ_G0033179.1 mouse_genomes_project 7 141847757 141866396 - MGP_AJ_P0087523 Sirt3 protein_coding protein_coding MGP_AJ_T0087524.1 MGP_AJ_G0033179.1 mouse_genomes_project 7 141849107 141862234 - MGP_AJ_P0087524 Sirt3 protein_coding protein_coding MGP_AJ_T0087525.1 MGP_AJ_G0033179.1 mouse_genomes_project 7 141853576 141865956 - MGP_AJ_P0087525 Sirt3 protein_coding protein_coding MGP_AJ_T0087526.1 MGP_AJ_G0033179.1 mouse_genomes_project 7 141860520 141865956 - MGP_AJ_P0087526 Sirt3 protein_coding protein_coding MGP_AJ_T0002257.1 MGP_AJ_G0002168.1 mouse_genomes_project 7 73675908 73676598 - TEC TEC MGP_AJ_T0082495.1 MGP_AJ_G0031871.1 mouse_genomes_project 7 24810859 24965337 + MGP_AJ_P0082495 protein_coding protein_coding MGP_AJ_T0083270.1 MGP_AJ_G0032052.1 mouse_genomes_project 7 32617490 32631001 - MGP_AJ_P0083270 Pdcd2l protein_coding protein_coding MGP_AJ_T0083271.1 MGP_AJ_G0032052.1 mouse_genomes_project 7 32617624 32630948 - MGP_AJ_P0083271 Pdcd2l protein_coding protein_coding MGP_AJ_T0083272.1 MGP_AJ_G0032052.1 mouse_genomes_project 7 32624135 32627121 - Pdcd2l protein_coding retained_intron MGP_AJ_T0083273.1 MGP_AJ_G0032052.1 mouse_genomes_project 7 32627182 32630486 - Pdcd2l protein_coding processed_transcript MGP_AJ_T0101870.1 MGP_AJ_G0039750.1 mouse_genomes_project 7 129162695 129188537 + transcribed_processed_pseudogene processed_transcript MGP_AJ_T0009024.1 MGP_AJ_G0007265.1 mouse_genomes_project 7 127038797 127063143 - Gm44875 lincRNA lincRNA MGP_AJ_T0083365.1 MGP_AJ_G0032070.1 mouse_genomes_project 7 33929103 34003205 - MGP_AJ_P0083365 protein_coding protein_coding MGP_AJ_T0083366.1 MGP_AJ_G0032070.1 mouse_genomes_project 7 33931196 34003206 - MGP_AJ_P0083366 protein_coding protein_coding MGP_AJ_T0083367.1 MGP_AJ_G0032070.1 mouse_genomes_project 7 33958242 34003361 - MGP_AJ_P0083367 protein_coding protein_coding MGP_AJ_T0083368.1 MGP_AJ_G0032070.1 mouse_genomes_project 7 33958245 34003413 - MGP_AJ_P0083368 protein_coding protein_coding MGP_AJ_T0083369.1 MGP_AJ_G0032070.1 mouse_genomes_project 7 33958274 33969641 - MGP_AJ_P0083369 protein_coding protein_coding MGP_AJ_T0083370.1 MGP_AJ_G0032070.1 mouse_genomes_project 7 33973409 34003361 - MGP_AJ_P0083370 protein_coding protein_coding MGP_AJ_T0008848.1 MGP_AJ_G0007146.1 mouse_genomes_project 7 34572805 34575946 + Gm45143 lincRNA lincRNA MGP_AJ_T0086993.1 MGP_AJ_G0033045.1 mouse_genomes_project 7 128738454 128741009 - MGP_AJ_P0086993 Vkorc1 protein_coding protein_coding MGP_AJ_T0086994.1 MGP_AJ_G0033045.1 mouse_genomes_project 7 128738456 128740643 - MGP_AJ_P0086994 Vkorc1 protein_coding protein_coding MGP_AJ_T0086995.1 MGP_AJ_G0033045.1 mouse_genomes_project 7 128738629 128740701 - MGP_AJ_P0086995 Vkorc1 protein_coding protein_coding MGP_AJ_T0018432.1 MGP_AJ_G0015677.1 mouse_genomes_project 7 142352022 142357969 - B230206H07Rik processed_transcript processed_transcript MGP_AJ_T0018433.1 MGP_AJ_G0015677.1 mouse_genomes_project 7 142352059 142357997 - B230206H07Rik processed_transcript processed_transcript MGP_AJ_T0084004.1 MGP_AJ_G0032234.1 mouse_genomes_project 7 45316489 45319344 - MGP_AJ_P0084004 Emp3 protein_coding protein_coding MGP_AJ_T0084005.1 MGP_AJ_G0032234.1 mouse_genomes_project 7 45316489 45319921 - MGP_AJ_P0084005 Emp3 protein_coding protein_coding MGP_AJ_T0083566.1 MGP_AJ_G0032127.1 mouse_genomes_project 7 42921834 42926718 + MGP_AJ_P0083566 Klk9 protein_coding protein_coding MGP_AJ_T0002312.1 MGP_AJ_G0002223.1 mouse_genomes_project 7 128639373 128642136 - TEC TEC MGP_AJ_T0015798.1 MGP_AJ_G0013893.1 mouse_genomes_project 7 40054138 40054936 - processed_pseudogene processed_pseudogene MGP_AJ_T0018434.1 MGP_AJ_G0015678.1 mouse_genomes_project 7 142458438 142463571 - Gm10575 processed_transcript processed_transcript MGP_AJ_T0018435.1 MGP_AJ_G0015678.1 mouse_genomes_project 7 142458440 142465834 - Gm10575 processed_transcript processed_transcript MGP_AJ_T0018436.1 MGP_AJ_G0015678.1 mouse_genomes_project 7 142458877 142460862 - Gm10575 processed_transcript processed_transcript MGP_AJ_T0010874.1 MGP_AJ_G0008996.1 mouse_genomes_project 7 61554802 61554882 - Gm23962 miRNA miRNA MGP_AJ_T0082160.1 MGP_AJ_G0031774.1 mouse_genomes_project 7 17504251 17510592 + MGP_AJ_P0082160 Gm19345 protein_coding protein_coding MGP_AJ_T0081626.1 MGP_AJ_G0031594.1 mouse_genomes_project 7 4260771 4279994 - MGP_AJ_P0081626 Clcn4 protein_coding protein_coding MGP_AJ_T0002198.1 MGP_AJ_G0002110.1 mouse_genomes_project 7 16629272 16632496 - TEC TEC MGP_AJ_T0102798.1 MGP_AJ_G0040538.1 mouse_genomes_project 7 23861914 23868796 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0015893.1 MGP_AJ_G0013988.1 mouse_genomes_project 7 98136497 98136888 + processed_pseudogene processed_pseudogene MGP_AJ_T0008970.1 MGP_AJ_G0007230.1 mouse_genomes_project 7 90310845 90315797 - 2310010J17Rik lincRNA lincRNA MGP_AJ_T0083083.1 MGP_AJ_G0032013.1 mouse_genomes_project 7 28846728 28857086 - MGP_AJ_P0083083 Rbm42 protein_coding protein_coding MGP_AJ_T0083084.1 MGP_AJ_G0032013.1 mouse_genomes_project 7 28846733 28856913 - MGP_AJ_P0083084 Rbm42 protein_coding protein_coding MGP_AJ_T0083085.1 MGP_AJ_G0032013.1 mouse_genomes_project 7 28850870 28852757 - Rbm42 protein_coding retained_intron MGP_AJ_T0008839.1 MGP_AJ_G0007138.1 mouse_genomes_project 7 32980235 32991984 + Gm12784 lincRNA lincRNA MGP_AJ_T0008840.1 MGP_AJ_G0007138.1 mouse_genomes_project 7 32982965 33016931 + Gm12784 lincRNA lincRNA MGP_AJ_T0005159.1 MGP_AJ_G0004393.1 mouse_genomes_project 7 17467170 17469243 + Gm16174 antisense antisense MGP_AJ_T0086010.1 MGP_AJ_G0032852.1 mouse_genomes_project 7 113047935 113096752 + MGP_AJ_P0086010 Micalcl protein_coding protein_coding MGP_AJ_T0086011.1 MGP_AJ_G0032852.1 mouse_genomes_project 7 113058142 113079136 + MGP_AJ_P0086011 Micalcl protein_coding protein_coding MGP_AJ_T0086012.1 MGP_AJ_G0032852.1 mouse_genomes_project 7 113058665 113096867 + MGP_AJ_P0086012 Micalcl protein_coding protein_coding MGP_AJ_T0086013.1 MGP_AJ_G0032852.1 mouse_genomes_project 7 113064938 113096867 + MGP_AJ_P0086013 Micalcl protein_coding protein_coding MGP_AJ_T0086014.1 MGP_AJ_G0032852.1 mouse_genomes_project 7 113090907 113096818 + Micalcl protein_coding retained_intron MGP_AJ_T0085841.1 MGP_AJ_G0032793.1 mouse_genomes_project 7 108706766 108707831 + MGP_AJ_P0085841 Olfr483 protein_coding protein_coding MGP_AJ_T0009041.1 MGP_AJ_G0007274.1 mouse_genomes_project 7 128536953 128546134 + Gm44514 lincRNA lincRNA MGP_AJ_T0011700.1 MGP_AJ_G0009822.1 mouse_genomes_project 7 143572987 143573057 + Gm27786 misc_RNA misc_RNA MGP_AJ_T0082050.1 MGP_AJ_G0031747.1 mouse_genomes_project 7 16988085 17000339 + MGP_AJ_P0082050 Ercc1 protein_coding protein_coding MGP_AJ_T0082051.1 MGP_AJ_G0031747.1 mouse_genomes_project 7 16988467 16998629 + Ercc1 protein_coding retained_intron MGP_AJ_T0082052.1 MGP_AJ_G0031747.1 mouse_genomes_project 7 16988473 16994162 + Ercc1 protein_coding retained_intron MGP_AJ_T0082053.1 MGP_AJ_G0031747.1 mouse_genomes_project 7 16988515 16997999 + MGP_AJ_P0082053 Ercc1 protein_coding protein_coding MGP_AJ_T0082054.1 MGP_AJ_G0031747.1 mouse_genomes_project 7 16988526 16993809 + MGP_AJ_P0082054 Ercc1 protein_coding nonsense_mediated_decay MGP_AJ_T0082055.1 MGP_AJ_G0031747.1 mouse_genomes_project 7 16991928 16995963 + MGP_AJ_P0082055 Ercc1 protein_coding protein_coding MGP_AJ_T0082056.1 MGP_AJ_G0031747.1 mouse_genomes_project 7 16993100 16997506 + Ercc1 protein_coding processed_transcript MGP_AJ_T0082057.1 MGP_AJ_G0031747.1 mouse_genomes_project 7 16995429 16998335 + Ercc1 protein_coding retained_intron MGP_AJ_T0082058.1 MGP_AJ_G0031747.1 mouse_genomes_project 7 16995890 17000337 + MGP_AJ_P0082058 Ercc1 protein_coding nonsense_mediated_decay MGP_AJ_T0082059.1 MGP_AJ_G0031747.1 mouse_genomes_project 7 16997526 17000338 + Ercc1 protein_coding retained_intron MGP_AJ_T0100182.1 MGP_AJ_G0038148.1 mouse_genomes_project 7 124215420 124215523 - Gm23559 snRNA snRNA MGP_AJ_T0015755.1 MGP_AJ_G0013850.1 mouse_genomes_project 7 24152817 24154397 + processed_pseudogene processed_pseudogene MGP_AJ_T0002201.1 MGP_AJ_G0002113.1 mouse_genomes_project 7 32687806 32688900 - TEC TEC MGP_AJ_T0081489.1 MGP_AJ_G0031532.1 mouse_genomes_project 7 1688267 1689499 - MGP_AJ_P0081489 Cox6b2 protein_coding protein_coding MGP_AJ_T0081490.1 MGP_AJ_G0031532.1 mouse_genomes_project 7 1688267 1689570 - MGP_AJ_P0081490 Cox6b2 protein_coding protein_coding MGP_AJ_T0081491.1 MGP_AJ_G0031532.1 mouse_genomes_project 7 1688267 1689499 - MGP_AJ_P0081491 Cox6b2 protein_coding protein_coding MGP_AJ_T0081492.1 MGP_AJ_G0031532.1 mouse_genomes_project 7 1688267 1689448 - MGP_AJ_P0081492 Cox6b2 protein_coding protein_coding MGP_AJ_T0081493.1 MGP_AJ_G0031532.1 mouse_genomes_project 7 1688269 1689485 - MGP_AJ_P0081493 Cox6b2 protein_coding protein_coding MGP_AJ_T0081494.1 MGP_AJ_G0031532.1 mouse_genomes_project 7 1688270 1689499 - MGP_AJ_P0081494 Cox6b2 protein_coding nonsense_mediated_decay MGP_AJ_T0081495.1 MGP_AJ_G0031532.1 mouse_genomes_project 7 1688330 1689514 - MGP_AJ_P0081495 Cox6b2 protein_coding protein_coding MGP_AJ_T0081496.1 MGP_AJ_G0031532.1 mouse_genomes_project 7 1688400 1689004 - Cox6b2 protein_coding retained_intron MGP_AJ_T0081497.1 MGP_AJ_G0031532.1 mouse_genomes_project 7 1688422 1689478 - MGP_AJ_P0081497 Cox6b2 protein_coding protein_coding MGP_AJ_T0085378.1 MGP_AJ_G0032561.1 mouse_genomes_project 7 101901840 101903797 - MGP_AJ_P0085378 Art2b protein_coding protein_coding MGP_AJ_T0085840.1 MGP_AJ_G0032792.1 mouse_genomes_project 7 108690561 108691533 - MGP_AJ_P0085840 Olfr482 protein_coding protein_coding MGP_AJ_T0084349.1 MGP_AJ_G0032323.1 mouse_genomes_project 7 65531148 65542801 + MGP_AJ_P0084349 Tm2d3 protein_coding protein_coding MGP_AJ_T0084350.1 MGP_AJ_G0032323.1 mouse_genomes_project 7 65533387 65542792 + MGP_AJ_P0084350 Tm2d3 protein_coding protein_coding MGP_AJ_T0084351.1 MGP_AJ_G0032323.1 mouse_genomes_project 7 65533396 65542803 + MGP_AJ_P0084351 Tm2d3 protein_coding protein_coding MGP_AJ_T0084352.1 MGP_AJ_G0032323.1 mouse_genomes_project 7 65533426 65538611 + MGP_AJ_P0084352 Tm2d3 protein_coding protein_coding MGP_AJ_T0084353.1 MGP_AJ_G0032323.1 mouse_genomes_project 7 65533446 65538758 + MGP_AJ_P0084353 Tm2d3 protein_coding protein_coding MGP_AJ_T0084354.1 MGP_AJ_G0032323.1 mouse_genomes_project 7 65533455 65542790 + MGP_AJ_P0084354 Tm2d3 protein_coding nonsense_mediated_decay MGP_AJ_T0084355.1 MGP_AJ_G0032323.1 mouse_genomes_project 7 65533456 65542792 + MGP_AJ_P0084355 Tm2d3 protein_coding protein_coding MGP_AJ_T0084356.1 MGP_AJ_G0032323.1 mouse_genomes_project 7 65533460 65535207 + MGP_AJ_P0084356 Tm2d3 protein_coding protein_coding MGP_AJ_T0084357.1 MGP_AJ_G0032323.1 mouse_genomes_project 7 65533503 65540042 + MGP_AJ_P0084357 Tm2d3 protein_coding protein_coding MGP_AJ_T0084358.1 MGP_AJ_G0032323.1 mouse_genomes_project 7 65533503 65538753 + MGP_AJ_P0084358 Tm2d3 protein_coding protein_coding MGP_AJ_T0015870.1 MGP_AJ_G0013965.1 mouse_genomes_project 7 81303041 81303554 - processed_pseudogene processed_pseudogene MGP_AJ_T0085439.1 MGP_AJ_G0032571.1 mouse_genomes_project 7 102317631 102363061 + MGP_AJ_P0085439 Numa1 protein_coding protein_coding MGP_AJ_T0085440.1 MGP_AJ_G0032571.1 mouse_genomes_project 7 102318586 102363064 + MGP_AJ_P0085440 Numa1 protein_coding unknown_likely_coding MGP_AJ_T0085441.1 MGP_AJ_G0032571.1 mouse_genomes_project 7 102349256 102363057 + MGP_AJ_P0085441 Numa1 protein_coding protein_coding MGP_AJ_T0085664.1 MGP_AJ_G0032712.1 mouse_genomes_project 7 105347317 105348256 - MGP_AJ_P0085664 Olfr672 protein_coding protein_coding MGP_AJ_T0084816.1 MGP_AJ_G0032406.1 mouse_genomes_project 7 81430024 81431824 - Rps17 protein_coding processed_transcript MGP_AJ_T0084817.1 MGP_AJ_G0032406.1 mouse_genomes_project 7 81430025 81432547 - MGP_AJ_P0084817 Rps17 protein_coding protein_coding MGP_AJ_T0084818.1 MGP_AJ_G0032406.1 mouse_genomes_project 7 81430032 81432527 - Rps17 protein_coding retained_intron MGP_AJ_T0084819.1 MGP_AJ_G0032406.1 mouse_genomes_project 7 81430709 81432525 - Rps17 protein_coding retained_intron MGP_AJ_T0084820.1 MGP_AJ_G0032406.1 mouse_genomes_project 7 81431996 81432517 - Rps17 protein_coding processed_transcript MGP_AJ_T0082690.1 MGP_AJ_G0031923.1 mouse_genomes_project 7 26516766 26523711 + MGP_AJ_P0082690 Paf1 protein_coding protein_coding MGP_AJ_T0082691.1 MGP_AJ_G0031923.1 mouse_genomes_project 7 26516777 26517867 + Paf1 protein_coding retained_intron MGP_AJ_T0082692.1 MGP_AJ_G0031923.1 mouse_genomes_project 7 26516856 26523706 + Paf1 protein_coding retained_intron MGP_AJ_T0082693.1 MGP_AJ_G0031923.1 mouse_genomes_project 7 26516976 26519597 + Paf1 protein_coding retained_intron MGP_AJ_T0082694.1 MGP_AJ_G0031923.1 mouse_genomes_project 7 26517273 26519515 + Paf1 protein_coding retained_intron MGP_AJ_T0082695.1 MGP_AJ_G0031923.1 mouse_genomes_project 7 26518582 26519619 + Paf1 protein_coding retained_intron MGP_AJ_T0082696.1 MGP_AJ_G0031923.1 mouse_genomes_project 7 26519244 26519899 + Paf1 protein_coding retained_intron MGP_AJ_T0082697.1 MGP_AJ_G0031923.1 mouse_genomes_project 7 26519644 26523066 + Paf1 protein_coding retained_intron MGP_AJ_T0082698.1 MGP_AJ_G0031923.1 mouse_genomes_project 7 26522756 26523383 + Paf1 protein_coding processed_transcript MGP_AJ_T0015890.1 MGP_AJ_G0013985.1 mouse_genomes_project 7 97809408 97810118 - processed_pseudogene processed_pseudogene MGP_AJ_T0081543.1 MGP_AJ_G0031552.1 mouse_genomes_project 7 1997380 1998506 + MGP_AJ_P0081543 protein_coding protein_coding MGP_AJ_T0008828.1 MGP_AJ_G0007127.1 mouse_genomes_project 7 23448701 23455444 + lincRNA lincRNA MGP_AJ_T0085078.1 MGP_AJ_G0032495.1 mouse_genomes_project 7 97534811 97557748 + MGP_AJ_P0085078 Kctd21 protein_coding protein_coding MGP_AJ_T0015774.1 MGP_AJ_G0013869.1 mouse_genomes_project 7 30835189 30836171 + processed_pseudogene processed_pseudogene MGP_AJ_T0015848.1 MGP_AJ_G0013943.1 mouse_genomes_project 7 65969584 65970330 - processed_pseudogene processed_pseudogene MGP_AJ_T0085651.1 MGP_AJ_G0032699.1 mouse_genomes_project 7 104948238 104956715 - MGP_AJ_P0085651 protein_coding protein_coding MGP_AJ_T0082399.1 MGP_AJ_G0031847.1 mouse_genomes_project 7 23311294 23342648 - MGP_AJ_P0082399 Ceacam1 protein_coding protein_coding MGP_AJ_T0082400.1 MGP_AJ_G0031847.1 mouse_genomes_project 7 23318392 23342609 - MGP_AJ_P0082400 Ceacam1 protein_coding protein_coding MGP_AJ_T0082401.1 MGP_AJ_G0031847.1 mouse_genomes_project 7 23318697 23342652 - Ceacam1 protein_coding retained_intron MGP_AJ_T0082402.1 MGP_AJ_G0031847.1 mouse_genomes_project 7 23318697 23342609 - MGP_AJ_P0082402 Ceacam1 protein_coding protein_coding MGP_AJ_T0082403.1 MGP_AJ_G0031847.1 mouse_genomes_project 7 23319061 23342609 - MGP_AJ_P0082403 Ceacam1 protein_coding protein_coding MGP_AJ_T0082404.1 MGP_AJ_G0031847.1 mouse_genomes_project 7 23319061 23342609 - MGP_AJ_P0082404 Ceacam1 protein_coding nonsense_mediated_decay MGP_AJ_T0082405.1 MGP_AJ_G0031847.1 mouse_genomes_project 7 23319061 23342609 - MGP_AJ_P0082405 Ceacam1 protein_coding protein_coding MGP_AJ_T0082406.1 MGP_AJ_G0031847.1 mouse_genomes_project 7 23319061 23342609 - MGP_AJ_P0082406 Ceacam1 protein_coding protein_coding MGP_AJ_T0082407.1 MGP_AJ_G0031847.1 mouse_genomes_project 7 23328077 23339827 - Ceacam1 protein_coding retained_intron MGP_AJ_T0082408.1 MGP_AJ_G0031847.1 mouse_genomes_project 7 23328078 23342658 - Ceacam1 protein_coding retained_intron MGP_AJ_T0083158.1 MGP_AJ_G0032028.1 mouse_genomes_project 7 29160456 29162209 - MGP_AJ_P0083158 Hamp2 protein_coding protein_coding MGP_AJ_T0101443.1 MGP_AJ_G0039409.1 mouse_genomes_project 7 110694383 110694567 + Snora23 snoRNA snoRNA MGP_AJ_T0083993.1 MGP_AJ_G0032232.1 mouse_genomes_project 7 45283962 45295403 - Syngr4 protein_coding processed_transcript MGP_AJ_T0083994.1 MGP_AJ_G0032232.1 mouse_genomes_project 7 45285629 45294487 - MGP_AJ_P0083994 Syngr4 protein_coding protein_coding MGP_AJ_T0084108.1 MGP_AJ_G0032266.1 mouse_genomes_project 7 48018840 48019877 - MGP_AJ_P0084108 Mrgprb5 protein_coding protein_coding MGP_AJ_T0081522.1 MGP_AJ_G0031542.1 mouse_genomes_project 7 1875700 1882487 + MGP_AJ_P0081522 Zfp628 protein_coding protein_coding MGP_AJ_T0015859.1 MGP_AJ_G0013954.1 mouse_genomes_project 7 74788981 74789779 + processed_pseudogene processed_pseudogene MGP_AJ_T0002305.1 MGP_AJ_G0002216.1 mouse_genomes_project 7 126873638 126875180 - TEC TEC MGP_AJ_T0085553.1 MGP_AJ_G0032632.1 mouse_genomes_project 7 103829971 103831985 + MGP_AJ_P0085553 protein_coding protein_coding MGP_AJ_T0085554.1 MGP_AJ_G0032632.1 mouse_genomes_project 7 103829974 103831985 + MGP_AJ_P0085554 protein_coding protein_coding MGP_AJ_T0011689.1 MGP_AJ_G0009811.1 mouse_genomes_project 7 79357312 79357570 - Gm24224 misc_RNA misc_RNA MGP_AJ_T0085752.1 MGP_AJ_G0032741.1 mouse_genomes_project 7 106152153 106156728 - MGP_AJ_P0085752 Rrp8 protein_coding protein_coding MGP_AJ_T0085753.1 MGP_AJ_G0032741.1 mouse_genomes_project 7 106152350 106157323 - MGP_AJ_P0085753 Rrp8 protein_coding protein_coding MGP_AJ_T0085754.1 MGP_AJ_G0032741.1 mouse_genomes_project 7 106152586 106153628 - Rrp8 protein_coding retained_intron MGP_AJ_T0085755.1 MGP_AJ_G0032741.1 mouse_genomes_project 7 106152952 106154010 - Rrp8 protein_coding processed_transcript MGP_AJ_T0085756.1 MGP_AJ_G0032741.1 mouse_genomes_project 7 106152952 106153893 - Rrp8 protein_coding retained_intron MGP_AJ_T0085757.1 MGP_AJ_G0032741.1 mouse_genomes_project 7 106154638 106156320 - Rrp8 protein_coding processed_transcript MGP_AJ_T0082267.1 MGP_AJ_G0031815.1 mouse_genomes_project 7 22387525 22408851 + MGP_AJ_P0082267 Ethe1 protein_coding protein_coding MGP_AJ_T0081677.1 MGP_AJ_G0031628.1 mouse_genomes_project 7 10142193 10152681 + MGP_AJ_P0081677 Zscan22 protein_coding protein_coding MGP_AJ_T0081678.1 MGP_AJ_G0031628.1 mouse_genomes_project 7 10142214 10153525 + MGP_AJ_P0081678 Zscan22 protein_coding protein_coding MGP_AJ_T0081679.1 MGP_AJ_G0031628.1 mouse_genomes_project 7 10142219 10151979 + MGP_AJ_P0081679 Zscan22 protein_coding protein_coding MGP_AJ_T0081680.1 MGP_AJ_G0031628.1 mouse_genomes_project 7 10142245 10152684 + MGP_AJ_P0081680 Zscan22 protein_coding protein_coding MGP_AJ_T0086052.1 MGP_AJ_G0032860.1 mouse_genomes_project 7 114407494 114407980 - MGP_AJ_P0086052 protein_coding protein_coding MGP_AJ_T0084768.1 MGP_AJ_G0032397.1 mouse_genomes_project 7 80766056 80859458 - MGP_AJ_P0084768 Iqgap1 protein_coding protein_coding MGP_AJ_T0084769.1 MGP_AJ_G0032397.1 mouse_genomes_project 7 80781232 80784649 - MGP_AJ_P0084769 Iqgap1 protein_coding nonsense_mediated_decay MGP_AJ_T0084770.1 MGP_AJ_G0032397.1 mouse_genomes_project 7 80795466 80798270 - Iqgap1 protein_coding retained_intron MGP_AJ_T0084771.1 MGP_AJ_G0032397.1 mouse_genomes_project 7 80804209 80859305 - Iqgap1 protein_coding retained_intron MGP_AJ_T0084772.1 MGP_AJ_G0032397.1 mouse_genomes_project 7 80809843 80859323 - Iqgap1 protein_coding retained_intron MGP_AJ_T0084773.1 MGP_AJ_G0032397.1 mouse_genomes_project 7 80817274 80873999 - MGP_AJ_P0084773 Iqgap1 protein_coding protein_coding MGP_AJ_T0084774.1 MGP_AJ_G0032397.1 mouse_genomes_project 7 80823081 80884120 - MGP_AJ_P0084774 Iqgap1 protein_coding protein_coding MGP_AJ_T0084775.1 MGP_AJ_G0032397.1 mouse_genomes_project 7 80852210 80859314 - Iqgap1 protein_coding retained_intron MGP_AJ_T0086003.1 MGP_AJ_G0032850.1 mouse_genomes_project 7 112794542 112838199 - MGP_AJ_P0086003 Dkk3 protein_coding protein_coding MGP_AJ_T0009010.1 MGP_AJ_G0007255.1 mouse_genomes_project 7 117958205 118007596 + Gm45152 lincRNA lincRNA MGP_AJ_T0085832.1 MGP_AJ_G0032784.1 mouse_genomes_project 7 108533851 108534784 + MGP_AJ_P0085832 Olfr473 protein_coding protein_coding MGP_AJ_T0085549.1 MGP_AJ_G0032628.1 mouse_genomes_project 7 103725193 103726097 + MGP_AJ_P0085549 Olfr596 protein_coding protein_coding MGP_AJ_T0083111.1 MGP_AJ_G0032021.1 mouse_genomes_project 7 28966451 28984438 + MGP_AJ_P0083111 Dmkn protein_coding protein_coding MGP_AJ_T0083112.1 MGP_AJ_G0032021.1 mouse_genomes_project 7 28966458 28984437 + MGP_AJ_P0083112 Dmkn protein_coding protein_coding MGP_AJ_T0083113.1 MGP_AJ_G0032021.1 mouse_genomes_project 7 28966458 28984437 + MGP_AJ_P0083113 Dmkn protein_coding protein_coding MGP_AJ_T0083114.1 MGP_AJ_G0032021.1 mouse_genomes_project 7 28966494 28984437 + MGP_AJ_P0083114 Dmkn protein_coding protein_coding MGP_AJ_T0083115.1 MGP_AJ_G0032021.1 mouse_genomes_project 7 28967752 28984183 + MGP_AJ_P0083115 Dmkn protein_coding protein_coding MGP_AJ_T0083116.1 MGP_AJ_G0032021.1 mouse_genomes_project 7 28979028 28984442 + MGP_AJ_P0083116 Dmkn protein_coding protein_coding MGP_AJ_T0085872.1 MGP_AJ_G0032821.1 mouse_genomes_project 7 109650844 109669768 + MGP_AJ_P0085872 Tub protein_coding protein_coding MGP_AJ_T0085873.1 MGP_AJ_G0032821.1 mouse_genomes_project 7 109666733 109668871 + Tub protein_coding retained_intron MGP_AJ_T0083219.1 MGP_AJ_G0032038.1 mouse_genomes_project 7 29348094 29365287 - MGP_AJ_P0083219 Hpn protein_coding nonsense_mediated_decay MGP_AJ_T0083220.1 MGP_AJ_G0032038.1 mouse_genomes_project 7 29348094 29365302 - MGP_AJ_P0083220 Hpn protein_coding protein_coding MGP_AJ_T0083221.1 MGP_AJ_G0032038.1 mouse_genomes_project 7 29348094 29360746 - MGP_AJ_P0083221 Hpn protein_coding protein_coding MGP_AJ_T0083222.1 MGP_AJ_G0032038.1 mouse_genomes_project 7 29348094 29365294 - MGP_AJ_P0083222 Hpn protein_coding protein_coding MGP_AJ_T0083223.1 MGP_AJ_G0032038.1 mouse_genomes_project 7 29348098 29351876 - MGP_AJ_P0083223 Hpn protein_coding protein_coding MGP_AJ_T0083224.1 MGP_AJ_G0032038.1 mouse_genomes_project 7 29348102 29348655 - MGP_AJ_P0083224 Hpn protein_coding protein_coding MGP_AJ_T0083225.1 MGP_AJ_G0032038.1 mouse_genomes_project 7 29348607 29349653 - Hpn protein_coding retained_intron MGP_AJ_T0083226.1 MGP_AJ_G0032038.1 mouse_genomes_project 7 29351554 29352568 - Hpn protein_coding retained_intron MGP_AJ_T0083227.1 MGP_AJ_G0032038.1 mouse_genomes_project 7 29351859 29352841 - Hpn protein_coding retained_intron MGP_AJ_T0083228.1 MGP_AJ_G0032038.1 mouse_genomes_project 7 29358293 29361707 - MGP_AJ_P0083228 Hpn protein_coding protein_coding MGP_AJ_T0083229.1 MGP_AJ_G0032038.1 mouse_genomes_project 7 29360314 29360758 - Hpn protein_coding retained_intron MGP_AJ_T0085547.1 MGP_AJ_G0032626.1 mouse_genomes_project 7 103701458 103705842 + MGP_AJ_P0085547 Olfr597 protein_coding protein_coding MGP_AJ_T0087707.1 MGP_AJ_G0033214.1 mouse_genomes_project 7 142452154 142457701 + MGP_AJ_P0087707 Pnpla2 protein_coding protein_coding MGP_AJ_T0087708.1 MGP_AJ_G0033214.1 mouse_genomes_project 7 142452162 142457050 + MGP_AJ_P0087708 Pnpla2 protein_coding nonsense_mediated_decay MGP_AJ_T0087709.1 MGP_AJ_G0033214.1 mouse_genomes_project 7 142452163 142457052 + MGP_AJ_P0087709 Pnpla2 protein_coding protein_coding MGP_AJ_T0087710.1 MGP_AJ_G0033214.1 mouse_genomes_project 7 142452175 142455896 + MGP_AJ_P0087710 Pnpla2 protein_coding protein_coding MGP_AJ_T0087711.1 MGP_AJ_G0033214.1 mouse_genomes_project 7 142452185 142457061 + MGP_AJ_P0087711 Pnpla2 protein_coding nonsense_mediated_decay MGP_AJ_T0087712.1 MGP_AJ_G0033214.1 mouse_genomes_project 7 142452563 142455108 + MGP_AJ_P0087712 Pnpla2 protein_coding protein_coding MGP_AJ_T0087713.1 MGP_AJ_G0033214.1 mouse_genomes_project 7 142453974 142455644 + MGP_AJ_P0087713 Pnpla2 protein_coding nonsense_mediated_decay MGP_AJ_T0082580.1 MGP_AJ_G0031892.1 mouse_genomes_project 7 25509917 25513326 + MGP_AJ_P0082580 Sertad1 protein_coding protein_coding MGP_AJ_T0082581.1 MGP_AJ_G0031892.1 mouse_genomes_project 7 25510382 25512517 + MGP_AJ_P0082581 Sertad1 protein_coding protein_coding MGP_AJ_T0087345.1 MGP_AJ_G0033116.1 mouse_genomes_project 7 136443001 136460288 - MGP_AJ_P0087345 Clrn3 protein_coding protein_coding MGP_AJ_T0081563.1 MGP_AJ_G0031564.1 mouse_genomes_project 7 2818250 2819693 - MGP_AJ_P0081563 Vmn1r56 protein_coding protein_coding MGP_AJ_T0085842.1 MGP_AJ_G0032794.1 mouse_genomes_project 7 108727463 108728561 - MGP_AJ_P0085842 protein_coding protein_coding MGP_AJ_T0015728.1 MGP_AJ_G0013823.1 mouse_genomes_project 7 14561213 14561678 - processed_pseudogene processed_pseudogene MGP_AJ_T0086440.1 MGP_AJ_G0032945.1 mouse_genomes_project 7 124210531 124262877 + MGP_AJ_P0086440 Lcmt1 protein_coding protein_coding MGP_AJ_T0086441.1 MGP_AJ_G0032945.1 mouse_genomes_project 7 124210605 124262869 + MGP_AJ_P0086441 Lcmt1 protein_coding protein_coding MGP_AJ_T0086442.1 MGP_AJ_G0032945.1 mouse_genomes_project 7 124240976 124255198 + Lcmt1 protein_coding processed_transcript MGP_AJ_T0086443.1 MGP_AJ_G0032945.1 mouse_genomes_project 7 124250585 124262863 + Lcmt1 protein_coding retained_intron MGP_AJ_T0086444.1 MGP_AJ_G0032945.1 mouse_genomes_project 7 124260368 124262867 + Lcmt1 protein_coding retained_intron MGP_AJ_T0002229.1 MGP_AJ_G0002141.1 mouse_genomes_project 7 54856269 54857610 + TEC TEC MGP_AJ_T0084190.1 MGP_AJ_G0032291.1 mouse_genomes_project 7 55739231 55778177 + MGP_AJ_P0084190 Tubgcp5 protein_coding protein_coding MGP_AJ_T0084191.1 MGP_AJ_G0032291.1 mouse_genomes_project 7 55739242 55773594 + Tubgcp5 protein_coding retained_intron MGP_AJ_T0084192.1 MGP_AJ_G0032291.1 mouse_genomes_project 7 55739245 55777946 + MGP_AJ_P0084192 Tubgcp5 protein_coding nonsense_mediated_decay MGP_AJ_T0084193.1 MGP_AJ_G0032291.1 mouse_genomes_project 7 55739269 55777946 + MGP_AJ_P0084193 Tubgcp5 protein_coding protein_coding MGP_AJ_T0084194.1 MGP_AJ_G0032291.1 mouse_genomes_project 7 55739303 55743991 + MGP_AJ_P0084194 Tubgcp5 protein_coding protein_coding MGP_AJ_T0084195.1 MGP_AJ_G0032291.1 mouse_genomes_project 7 55749703 55754028 + Tubgcp5 protein_coding retained_intron MGP_AJ_T0084196.1 MGP_AJ_G0032291.1 mouse_genomes_project 7 55751356 55763578 + Tubgcp5 protein_coding retained_intron MGP_AJ_T0084197.1 MGP_AJ_G0032291.1 mouse_genomes_project 7 55763125 55764850 + Tubgcp5 protein_coding retained_intron MGP_AJ_T0084198.1 MGP_AJ_G0032291.1 mouse_genomes_project 7 55767468 55777435 + Tubgcp5 protein_coding retained_intron MGP_AJ_T0084199.1 MGP_AJ_G0032291.1 mouse_genomes_project 7 55772775 55777737 + MGP_AJ_P0084199 Tubgcp5 protein_coding nonsense_mediated_decay MGP_AJ_T0015913.1 MGP_AJ_G0014008.1 mouse_genomes_project 7 111077004 111077570 + processed_pseudogene processed_pseudogene MGP_AJ_T0005278.1 MGP_AJ_G0004479.1 mouse_genomes_project 7 122248418 122374124 - 4933432K03Rik antisense antisense MGP_AJ_T0005279.1 MGP_AJ_G0004479.1 mouse_genomes_project 7 122344482 122374126 - 4933432K03Rik antisense antisense MGP_AJ_T0005280.1 MGP_AJ_G0004479.1 mouse_genomes_project 7 122373565 122390583 - 4933432K03Rik antisense antisense MGP_AJ_T0102871.1 MGP_AJ_G0040611.1 mouse_genomes_project 7 85578965 85579240 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0081832.1 MGP_AJ_G0031677.1 mouse_genomes_project 7 13739626 13741237 - MGP_AJ_P0081832 Inafm1 protein_coding protein_coding MGP_AJ_T0082624.1 MGP_AJ_G0031901.1 mouse_genomes_project 7 25728465 25868886 + MGP_AJ_P0082624 protein_coding protein_coding MGP_AJ_T0082633.1 MGP_AJ_G0031901.1 mouse_genomes_project 7 25856776 25864639 + MGP_AJ_P0082633 protein_coding protein_coding MGP_AJ_T0086389.1 MGP_AJ_G0032939.1 mouse_genomes_project 7 123095854 123445283 + MGP_AJ_P0086389 Prkcb protein_coding nonsense_mediated_decay MGP_AJ_T0086390.1 MGP_AJ_G0032939.1 mouse_genomes_project 7 123096400 123439421 + MGP_AJ_P0086390 Prkcb protein_coding protein_coding MGP_AJ_T0086391.1 MGP_AJ_G0032939.1 mouse_genomes_project 7 123096412 123445286 + MGP_AJ_P0086391 Prkcb protein_coding protein_coding MGP_AJ_T0086392.1 MGP_AJ_G0032939.1 mouse_genomes_project 7 123097131 123239569 + Prkcb protein_coding processed_transcript MGP_AJ_T0086393.1 MGP_AJ_G0032939.1 mouse_genomes_project 7 123230465 123271376 + Prkcb protein_coding processed_transcript MGP_AJ_T0086394.1 MGP_AJ_G0032939.1 mouse_genomes_project 7 123403662 123406476 + Prkcb protein_coding retained_intron MGP_AJ_T0086395.1 MGP_AJ_G0032939.1 mouse_genomes_project 7 123409795 123438844 + Prkcb protein_coding processed_transcript MGP_AJ_T0086396.1 MGP_AJ_G0032939.1 mouse_genomes_project 7 123444273 123445286 + Prkcb protein_coding retained_intron MGP_AJ_T0084059.1 MGP_AJ_G0032250.1 mouse_genomes_project 7 46172977 46177672 + MGP_AJ_P0084059 Saa2 protein_coding protein_coding MGP_AJ_T0083132.1 MGP_AJ_G0032024.1 mouse_genomes_project 7 29063235 29065080 - MGP_AJ_P0083132 Ffar3 protein_coding protein_coding MGP_AJ_T0083133.1 MGP_AJ_G0032024.1 mouse_genomes_project 7 29063835 29065069 - MGP_AJ_P0083133 Ffar3 protein_coding protein_coding MGP_AJ_T0002307.1 MGP_AJ_G0002218.1 mouse_genomes_project 7 127766517 127768298 + TEC TEC MGP_AJ_T0086253.1 MGP_AJ_G0032902.1 mouse_genomes_project 7 120524715 120578410 + MGP_AJ_P0086253 2610020H08Rik protein_coding protein_coding MGP_AJ_T0086254.1 MGP_AJ_G0032902.1 mouse_genomes_project 7 120524719 120578410 + MGP_AJ_P0086254 2610020H08Rik protein_coding protein_coding MGP_AJ_T0086255.1 MGP_AJ_G0032902.1 mouse_genomes_project 7 120524860 120549886 + 2610020H08Rik protein_coding retained_intron MGP_AJ_T0086256.1 MGP_AJ_G0032902.1 mouse_genomes_project 7 120525089 120578280 + MGP_AJ_P0086256 2610020H08Rik protein_coding protein_coding MGP_AJ_T0086257.1 MGP_AJ_G0032902.1 mouse_genomes_project 7 120553134 120561813 + 2610020H08Rik protein_coding processed_transcript MGP_AJ_T0086258.1 MGP_AJ_G0032902.1 mouse_genomes_project 7 120554585 120557045 + 2610020H08Rik protein_coding retained_intron MGP_AJ_T0086259.1 MGP_AJ_G0032902.1 mouse_genomes_project 7 120563344 120573506 + 2610020H08Rik protein_coding processed_transcript MGP_AJ_T0086260.1 MGP_AJ_G0032902.1 mouse_genomes_project 7 120573672 120574903 + 2610020H08Rik protein_coding retained_intron MGP_AJ_T0084862.1 MGP_AJ_G0032419.1 mouse_genomes_project 7 82062951 82088566 - MGP_AJ_P0084862 Bnc1 protein_coding protein_coding MGP_AJ_T0081333.1 MGP_AJ_G0031505.1 mouse_genomes_project 7 570291 573191 + MGP_AJ_P0081333 Rps9 protein_coding protein_coding MGP_AJ_T0081334.1 MGP_AJ_G0031505.1 mouse_genomes_project 7 570336 573189 + MGP_AJ_P0081334 Rps9 protein_coding protein_coding MGP_AJ_T0081335.1 MGP_AJ_G0031505.1 mouse_genomes_project 7 570339 571176 + Rps9 protein_coding retained_intron MGP_AJ_T0081336.1 MGP_AJ_G0031505.1 mouse_genomes_project 7 570340 571020 + MGP_AJ_P0081336 Rps9 protein_coding protein_coding MGP_AJ_T0081337.1 MGP_AJ_G0031505.1 mouse_genomes_project 7 570346 571728 + Rps9 protein_coding retained_intron MGP_AJ_T0081338.1 MGP_AJ_G0031505.1 mouse_genomes_project 7 570350 573154 + MGP_AJ_P0081338 Rps9 protein_coding protein_coding MGP_AJ_T0081339.1 MGP_AJ_G0031505.1 mouse_genomes_project 7 570618 573170 + MGP_AJ_P0081339 Rps9 protein_coding protein_coding MGP_AJ_T0081340.1 MGP_AJ_G0031505.1 mouse_genomes_project 7 570623 572679 + MGP_AJ_P0081340 Rps9 protein_coding protein_coding MGP_AJ_T0081341.1 MGP_AJ_G0031505.1 mouse_genomes_project 7 570662 573188 + MGP_AJ_P0081341 Rps9 protein_coding nonsense_mediated_decay MGP_AJ_T0081342.1 MGP_AJ_G0031505.1 mouse_genomes_project 7 571914 572526 + Rps9 protein_coding retained_intron MGP_AJ_T0015722.1 MGP_AJ_G0013817.1 mouse_genomes_project 7 13363149 13364109 + processed_pseudogene processed_pseudogene MGP_AJ_T0102835.1 MGP_AJ_G0040575.1 mouse_genomes_project 7 43460378 43565131 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0015702.1 MGP_AJ_G0013797.1 mouse_genomes_project 7 3393025 3393235 - processed_pseudogene processed_pseudogene MGP_AJ_T0085800.1 MGP_AJ_G0032759.1 mouse_genomes_project 7 107481743 107482691 + MGP_AJ_P0085800 Olfr704 protein_coding protein_coding MGP_AJ_T0005163.1 MGP_AJ_G0004397.1 mouse_genomes_project 7 22430941 22437713 - Gm26550 antisense antisense MGP_AJ_T0005290.1 MGP_AJ_G0004487.1 mouse_genomes_project 7 128362095 128364526 - 1700008J07Rik antisense antisense MGP_AJ_T0015871.1 MGP_AJ_G0013966.1 mouse_genomes_project 7 81530264 81531041 + processed_pseudogene processed_pseudogene MGP_AJ_T0082039.1 MGP_AJ_G0031743.1 mouse_genomes_project 7 16899946 16914859 - MGP_AJ_P0082039 Vasp protein_coding protein_coding MGP_AJ_T0082040.1 MGP_AJ_G0031743.1 mouse_genomes_project 7 16900601 16901149 - Vasp protein_coding retained_intron MGP_AJ_T0082041.1 MGP_AJ_G0031743.1 mouse_genomes_project 7 16903678 16904094 - Vasp protein_coding processed_transcript MGP_AJ_T0082042.1 MGP_AJ_G0031743.1 mouse_genomes_project 7 16903879 16909589 - Vasp protein_coding processed_transcript MGP_AJ_T0085079.1 MGP_AJ_G0032496.1 mouse_genomes_project 7 97580961 97601944 + MGP_AJ_P0085079 Alg8 protein_coding protein_coding MGP_AJ_T0085080.1 MGP_AJ_G0032496.1 mouse_genomes_project 7 97596373 97601510 + Alg8 protein_coding retained_intron MGP_AJ_T0085081.1 MGP_AJ_G0032496.1 mouse_genomes_project 7 97596630 97601844 + Alg8 protein_coding processed_transcript MGP_AJ_T0085082.1 MGP_AJ_G0032496.1 mouse_genomes_project 7 97596958 97601407 + Alg8 protein_coding processed_transcript MGP_AJ_T0085083.1 MGP_AJ_G0032496.1 mouse_genomes_project 7 97597778 97601568 + Alg8 protein_coding retained_intron MGP_AJ_T0085084.1 MGP_AJ_G0032496.1 mouse_genomes_project 7 97600487 97601651 + Alg8 protein_coding retained_intron MGP_AJ_T0085811.1 MGP_AJ_G0032770.1 mouse_genomes_project 7 107709723 107710671 + MGP_AJ_P0085811 Olfr17 protein_coding protein_coding MGP_AJ_T0102905.1 MGP_AJ_G0040645.1 mouse_genomes_project 7 104622429 104623425 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0087756.1 MGP_AJ_G0033224.1 mouse_genomes_project 7 142929254 142985217 + MGP_AJ_P0087756 Brsk2 protein_coding protein_coding MGP_AJ_T0087757.1 MGP_AJ_G0033224.1 mouse_genomes_project 7 142929254 142979976 + MGP_AJ_P0087757 Brsk2 protein_coding protein_coding MGP_AJ_T0087758.1 MGP_AJ_G0033224.1 mouse_genomes_project 7 142929349 142980143 + MGP_AJ_P0087758 Brsk2 protein_coding protein_coding MGP_AJ_T0087759.1 MGP_AJ_G0033224.1 mouse_genomes_project 7 142929519 142983900 + MGP_AJ_P0087759 Brsk2 protein_coding nonsense_mediated_decay MGP_AJ_T0087760.1 MGP_AJ_G0033224.1 mouse_genomes_project 7 142929595 142981921 + MGP_AJ_P0087760 Brsk2 protein_coding protein_coding MGP_AJ_T0087761.1 MGP_AJ_G0033224.1 mouse_genomes_project 7 142929598 142985218 + MGP_AJ_P0087761 Brsk2 protein_coding protein_coding MGP_AJ_T0087762.1 MGP_AJ_G0033224.1 mouse_genomes_project 7 142929598 142983203 + MGP_AJ_P0087762 Brsk2 protein_coding protein_coding MGP_AJ_T0087763.1 MGP_AJ_G0033224.1 mouse_genomes_project 7 142962507 142983118 + MGP_AJ_P0087763 Brsk2 protein_coding nonsense_mediated_decay MGP_AJ_T0087764.1 MGP_AJ_G0033224.1 mouse_genomes_project 7 142965819 142983118 + MGP_AJ_P0087764 Brsk2 protein_coding nonsense_mediated_decay MGP_AJ_T0087765.1 MGP_AJ_G0033224.1 mouse_genomes_project 7 142965859 142984142 + MGP_AJ_P0087765 Brsk2 protein_coding nonsense_mediated_decay MGP_AJ_T0087766.1 MGP_AJ_G0033224.1 mouse_genomes_project 7 142966680 142983118 + MGP_AJ_P0087766 Brsk2 protein_coding nonsense_mediated_decay MGP_AJ_T0087767.1 MGP_AJ_G0033224.1 mouse_genomes_project 7 142974124 142983121 + MGP_AJ_P0087767 Brsk2 protein_coding protein_coding MGP_AJ_T0087768.1 MGP_AJ_G0033224.1 mouse_genomes_project 7 142974180 142983447 + MGP_AJ_P0087768 Brsk2 protein_coding protein_coding MGP_AJ_T0087769.1 MGP_AJ_G0033224.1 mouse_genomes_project 7 142978440 142985038 + Brsk2 protein_coding processed_transcript MGP_AJ_T0087770.1 MGP_AJ_G0033224.1 mouse_genomes_project 7 142978468 142983646 + Brsk2 protein_coding processed_transcript MGP_AJ_T0087771.1 MGP_AJ_G0033224.1 mouse_genomes_project 7 142979631 142982412 + MGP_AJ_P0087771 Brsk2 protein_coding protein_coding MGP_AJ_T0087919.1 MGP_AJ_G0033256.1 mouse_genomes_project 7 144444142 144482033 + MGP_AJ_P0087919 Slc22a18 protein_coding protein_coding MGP_AJ_T0087920.1 MGP_AJ_G0033256.1 mouse_genomes_project 7 144456413 144459000 + Slc22a18 protein_coding processed_transcript MGP_AJ_T0087921.1 MGP_AJ_G0033256.1 mouse_genomes_project 7 144456460 144479752 + MGP_AJ_P0087921 Slc22a18 protein_coding nonsense_mediated_decay MGP_AJ_T0087922.1 MGP_AJ_G0033256.1 mouse_genomes_project 7 144456472 144482035 + MGP_AJ_P0087922 Slc22a18 protein_coding nonsense_mediated_decay MGP_AJ_T0087923.1 MGP_AJ_G0033256.1 mouse_genomes_project 7 144456497 144479753 + MGP_AJ_P0087923 Slc22a18 protein_coding nonsense_mediated_decay MGP_AJ_T0086034.1 MGP_AJ_G0032856.1 mouse_genomes_project 7 113891755 114004807 + MGP_AJ_P0086034 Arntl protein_coding protein_coding MGP_AJ_T0015949.1 MGP_AJ_G0014044.1 mouse_genomes_project 7 139867464 139868391 + processed_pseudogene processed_pseudogene MGP_AJ_T0085259.1 MGP_AJ_G0032540.1 mouse_genomes_project 7 100566620 100601791 + MGP_AJ_P0085259 P4ha3 protein_coding protein_coding MGP_AJ_T0085260.1 MGP_AJ_G0032540.1 mouse_genomes_project 7 100566620 100601791 + MGP_AJ_P0085260 P4ha3 protein_coding nonsense_mediated_decay MGP_AJ_T0085261.1 MGP_AJ_G0032540.1 mouse_genomes_project 7 100566642 100580479 + P4ha3 protein_coding retained_intron MGP_AJ_T0085262.1 MGP_AJ_G0032540.1 mouse_genomes_project 7 100575661 100601790 + MGP_AJ_P0085262 P4ha3 protein_coding protein_coding MGP_AJ_T0083558.1 MGP_AJ_G0032124.1 mouse_genomes_project 7 42898848 42903537 + MGP_AJ_P0083558 Klk12 protein_coding protein_coding MGP_AJ_T0083559.1 MGP_AJ_G0032124.1 mouse_genomes_project 7 42899051 42903427 + MGP_AJ_P0083559 Klk12 protein_coding protein_coding MGP_AJ_T0102846.1 MGP_AJ_G0040586.1 mouse_genomes_project 7 47759077 47882752 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0015934.1 MGP_AJ_G0014029.1 mouse_genomes_project 7 127574863 127575225 + processed_pseudogene processed_pseudogene MGP_AJ_T0082951.1 MGP_AJ_G0031988.1 mouse_genomes_project 7 28502218 28517970 + MGP_AJ_P0082951 Clip3 protein_coding protein_coding MGP_AJ_T0082952.1 MGP_AJ_G0031988.1 mouse_genomes_project 7 28502274 28503219 + Clip3 protein_coding retained_intron MGP_AJ_T0082953.1 MGP_AJ_G0031988.1 mouse_genomes_project 7 28502275 28507547 + MGP_AJ_P0082953 Clip3 protein_coding protein_coding MGP_AJ_T0082954.1 MGP_AJ_G0031988.1 mouse_genomes_project 7 28502285 28507303 + MGP_AJ_P0082954 Clip3 protein_coding protein_coding MGP_AJ_T0082955.1 MGP_AJ_G0031988.1 mouse_genomes_project 7 28502504 28507314 + MGP_AJ_P0082955 Clip3 protein_coding protein_coding MGP_AJ_T0082956.1 MGP_AJ_G0031988.1 mouse_genomes_project 7 28507496 28509550 + Clip3 protein_coding processed_transcript MGP_AJ_T0082957.1 MGP_AJ_G0031988.1 mouse_genomes_project 7 28514304 28516906 + Clip3 protein_coding processed_transcript MGP_AJ_T0083625.1 MGP_AJ_G0032141.1 mouse_genomes_project 7 43820758 43823126 + MGP_AJ_P0083625 Aspdh protein_coding protein_coding MGP_AJ_T0083626.1 MGP_AJ_G0032141.1 mouse_genomes_project 7 43820776 43822702 + MGP_AJ_P0083626 Aspdh protein_coding protein_coding MGP_AJ_T0083627.1 MGP_AJ_G0032141.1 mouse_genomes_project 7 43820784 43822589 + MGP_AJ_P0083627 Aspdh protein_coding nonsense_mediated_decay MGP_AJ_T0083628.1 MGP_AJ_G0032141.1 mouse_genomes_project 7 43820793 43822580 + Aspdh protein_coding retained_intron MGP_AJ_T0083629.1 MGP_AJ_G0032141.1 mouse_genomes_project 7 43820811 43822684 + Aspdh protein_coding processed_transcript MGP_AJ_T0083630.1 MGP_AJ_G0032141.1 mouse_genomes_project 7 43821836 43823063 + MGP_AJ_P0083630 Aspdh protein_coding protein_coding MGP_AJ_T0081562.1 MGP_AJ_G0031563.1 mouse_genomes_project 7 2304607 2314744 + MGP_AJ_P0081562 Gm5065 protein_coding protein_coding MGP_AJ_T0008943.1 MGP_AJ_G0007219.1 mouse_genomes_project 7 79509047 79541567 + Mir9-3hg lincRNA lincRNA MGP_AJ_T0008944.1 MGP_AJ_G0007219.1 mouse_genomes_project 7 79509059 79541772 + Mir9-3hg lincRNA lincRNA MGP_AJ_T0008945.1 MGP_AJ_G0007219.1 mouse_genomes_project 7 79509138 79544667 + Mir9-3hg lincRNA lincRNA MGP_AJ_T0008946.1 MGP_AJ_G0007219.1 mouse_genomes_project 7 79509142 79541657 + Mir9-3hg lincRNA lincRNA MGP_AJ_T0008947.1 MGP_AJ_G0007219.1 mouse_genomes_project 7 79524464 79542855 + Mir9-3hg lincRNA lincRNA MGP_AJ_T0008948.1 MGP_AJ_G0007219.1 mouse_genomes_project 7 79524667 79541523 + Mir9-3hg lincRNA lincRNA MGP_AJ_T0008949.1 MGP_AJ_G0007219.1 mouse_genomes_project 7 79537345 79542308 + Mir9-3hg lincRNA lincRNA MGP_AJ_T0099089.1 MGP_AJ_G0037062.1 mouse_genomes_project 7 78548870 78563987 - Gm44606 sense_intronic sense_intronic MGP_AJ_T0084212.1 MGP_AJ_G0032293.1 mouse_genomes_project 7 55890906 55915330 - MGP_AJ_P0084212 Nipa2 protein_coding protein_coding MGP_AJ_T0084213.1 MGP_AJ_G0032293.1 mouse_genomes_project 7 55890906 55915293 - MGP_AJ_P0084213 Nipa2 protein_coding protein_coding MGP_AJ_T0084214.1 MGP_AJ_G0032293.1 mouse_genomes_project 7 55890906 55915099 - MGP_AJ_P0084214 Nipa2 protein_coding protein_coding MGP_AJ_T0084215.1 MGP_AJ_G0032293.1 mouse_genomes_project 7 55890906 55915304 - MGP_AJ_P0084215 Nipa2 protein_coding protein_coding MGP_AJ_T0084216.1 MGP_AJ_G0032293.1 mouse_genomes_project 7 55892868 55915246 - Nipa2 protein_coding processed_transcript MGP_AJ_T0084217.1 MGP_AJ_G0032293.1 mouse_genomes_project 7 55893133 55897680 - Nipa2 protein_coding retained_intron MGP_AJ_T0084218.1 MGP_AJ_G0032293.1 mouse_genomes_project 7 55895417 55915330 - MGP_AJ_P0084218 Nipa2 protein_coding protein_coding MGP_AJ_T0084219.1 MGP_AJ_G0032293.1 mouse_genomes_project 7 55895465 55915284 - MGP_AJ_P0084219 Nipa2 protein_coding protein_coding MGP_AJ_T0084220.1 MGP_AJ_G0032293.1 mouse_genomes_project 7 55901563 55915322 - Nipa2 protein_coding retained_intron MGP_AJ_T0084221.1 MGP_AJ_G0032293.1 mouse_genomes_project 7 55901740 55904558 - Nipa2 protein_coding retained_intron MGP_AJ_T0084222.1 MGP_AJ_G0032293.1 mouse_genomes_project 7 55904220 55915027 - MGP_AJ_P0084222 Nipa2 protein_coding protein_coding MGP_AJ_T0010873.1 MGP_AJ_G0008995.1 mouse_genomes_project 7 61547116 61547195 - Gm25533 miRNA miRNA MGP_AJ_T0086819.1 MGP_AJ_G0033009.1 mouse_genomes_project 7 128046109 128046807 - Sept1 protein_coding retained_intron MGP_AJ_T0086820.1 MGP_AJ_G0033009.1 mouse_genomes_project 7 128046439 128050072 - MGP_AJ_P0086820 Sept1 protein_coding protein_coding MGP_AJ_T0086821.1 MGP_AJ_G0033009.1 mouse_genomes_project 7 128046452 128050134 - MGP_AJ_P0086821 Sept1 protein_coding protein_coding MGP_AJ_T0086822.1 MGP_AJ_G0033009.1 mouse_genomes_project 7 128046647 128048702 - Sept1 protein_coding retained_intron MGP_AJ_T0086823.1 MGP_AJ_G0033009.1 mouse_genomes_project 7 128047566 128050053 - MGP_AJ_P0086823 Sept1 protein_coding protein_coding MGP_AJ_T0086824.1 MGP_AJ_G0033009.1 mouse_genomes_project 7 128048390 128064232 - MGP_AJ_P0086824 Sept1 protein_coding protein_coding MGP_AJ_T0086825.1 MGP_AJ_G0033009.1 mouse_genomes_project 7 128048427 128050089 - Sept1 protein_coding retained_intron MGP_AJ_T0086826.1 MGP_AJ_G0033009.1 mouse_genomes_project 7 128048634 128049894 - Sept1 protein_coding processed_transcript MGP_AJ_T0086827.1 MGP_AJ_G0033009.1 mouse_genomes_project 7 128064007 128064716 - Sept1 protein_coding retained_intron MGP_AJ_T0081627.1 MGP_AJ_G0031595.1 mouse_genomes_project 7 7183576 7210693 - MGP_AJ_P0081627 protein_coding protein_coding MGP_AJ_T0005144.1 MGP_AJ_G0004385.1 mouse_genomes_project 7 3946705 3967294 - Zim3 antisense antisense MGP_AJ_T0005145.1 MGP_AJ_G0004385.1 mouse_genomes_project 7 3954401 3966327 - Zim3 antisense antisense MGP_AJ_T0005146.1 MGP_AJ_G0004385.1 mouse_genomes_project 7 3966934 3968051 - Zim3 antisense antisense MGP_AJ_T0084971.1 MGP_AJ_G0032467.1 mouse_genomes_project 7 88648558 88711488 + MGP_AJ_P0084971 Rab38 protein_coding protein_coding MGP_AJ_T0081585.1 MGP_AJ_G0031573.1 mouse_genomes_project 7 3269020 3291051 + MGP_AJ_P0081585 Zfp667 protein_coding protein_coding MGP_AJ_T0081586.1 MGP_AJ_G0031573.1 mouse_genomes_project 7 3269034 3284055 + Zfp667 protein_coding processed_transcript MGP_AJ_T0081587.1 MGP_AJ_G0031573.1 mouse_genomes_project 7 3269055 3291030 + MGP_AJ_P0081587 Zfp667 protein_coding protein_coding MGP_AJ_T0081588.1 MGP_AJ_G0031573.1 mouse_genomes_project 7 3270305 3290850 + MGP_AJ_P0081588 Zfp667 protein_coding protein_coding MGP_AJ_T0081589.1 MGP_AJ_G0031573.1 mouse_genomes_project 7 3273655 3277803 + Zfp667 protein_coding retained_intron MGP_AJ_T0085861.1 MGP_AJ_G0032813.1 mouse_genomes_project 7 109387389 109388319 + MGP_AJ_P0085861 Olfr513 protein_coding protein_coding MGP_AJ_T0083767.1 MGP_AJ_G0032166.1 mouse_genomes_project 7 44308524 44326642 + MGP_AJ_P0083767 Tsks protein_coding protein_coding MGP_AJ_T0083768.1 MGP_AJ_G0032166.1 mouse_genomes_project 7 44308524 44326642 + MGP_AJ_P0083768 Tsks protein_coding protein_coding MGP_AJ_T0018329.1 MGP_AJ_G0015632.1 mouse_genomes_project 7 21974288 21975540 + Gm44796 processed_transcript processed_transcript MGP_AJ_T0082324.1 MGP_AJ_G0031830.1 mouse_genomes_project 7 22816521 22844701 - MGP_AJ_P0082324 Atp1a3 protein_coding protein_coding MGP_AJ_T0082325.1 MGP_AJ_G0031830.1 mouse_genomes_project 7 22816521 22844764 - MGP_AJ_P0082325 Atp1a3 protein_coding protein_coding MGP_AJ_T0082326.1 MGP_AJ_G0031830.1 mouse_genomes_project 7 22816524 22844749 - MGP_AJ_P0082326 Atp1a3 protein_coding protein_coding MGP_AJ_T0082327.1 MGP_AJ_G0031830.1 mouse_genomes_project 7 22830837 22844713 - Atp1a3 protein_coding retained_intron MGP_AJ_T0082328.1 MGP_AJ_G0031830.1 mouse_genomes_project 7 22839377 22844763 - Atp1a3 protein_coding retained_intron MGP_AJ_T0082176.1 MGP_AJ_G0031784.1 mouse_genomes_project 7 21215692 21216607 - MGP_AJ_P0082176 protein_coding protein_coding MGP_AJ_T0010858.1 MGP_AJ_G0008980.1 mouse_genomes_project 7 33533767 33533837 + Gm25033 miRNA miRNA MGP_AJ_T0002310.1 MGP_AJ_G0002221.1 mouse_genomes_project 7 128305834 128307236 + TEC TEC MGP_AJ_T0084942.1 MGP_AJ_G0032452.1 mouse_genomes_project 7 86648122 86649115 + MGP_AJ_P0084942 Olfr299 protein_coding protein_coding MGP_AJ_T0015929.1 MGP_AJ_G0014024.1 mouse_genomes_project 7 126360001 126361335 + processed_pseudogene processed_pseudogene MGP_AJ_T0084050.1 MGP_AJ_G0032246.1 mouse_genomes_project 7 46094728 46131183 - MGP_AJ_P0084050 Saal1 protein_coding protein_coding MGP_AJ_T0084051.1 MGP_AJ_G0032246.1 mouse_genomes_project 7 46097889 46129420 - Saal1 protein_coding retained_intron MGP_AJ_T0084052.1 MGP_AJ_G0032246.1 mouse_genomes_project 7 46097924 46131144 - Saal1 protein_coding retained_intron MGP_AJ_T0084053.1 MGP_AJ_G0032246.1 mouse_genomes_project 7 46097926 46098518 - Saal1 protein_coding processed_transcript MGP_AJ_T0084054.1 MGP_AJ_G0032246.1 mouse_genomes_project 7 46112425 46131161 - Saal1 protein_coding retained_intron MGP_AJ_T0084055.1 MGP_AJ_G0032246.1 mouse_genomes_project 7 46112847 46131164 - Saal1 protein_coding retained_intron MGP_AJ_T0015742.1 MGP_AJ_G0013837.1 mouse_genomes_project 7 22562016 22562363 - processed_pseudogene processed_pseudogene MGP_AJ_T0102771.1 MGP_AJ_G0040512.1 mouse_genomes_project 7 10504039 10504240 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0082521.1 MGP_AJ_G0031880.1 mouse_genomes_project 7 25200632 25202877 - Snrpa protein_coding retained_intron MGP_AJ_T0082522.1 MGP_AJ_G0031880.1 mouse_genomes_project 7 25200634 25209623 - MGP_AJ_P0082522 Snrpa protein_coding protein_coding MGP_AJ_T0082523.1 MGP_AJ_G0031880.1 mouse_genomes_project 7 25200634 25210108 - MGP_AJ_P0082523 Snrpa protein_coding protein_coding MGP_AJ_T0082524.1 MGP_AJ_G0031880.1 mouse_genomes_project 7 25200634 25210134 - MGP_AJ_P0082524 Snrpa protein_coding protein_coding MGP_AJ_T0082525.1 MGP_AJ_G0031880.1 mouse_genomes_project 7 25201189 25209623 - MGP_AJ_P0082525 Snrpa protein_coding protein_coding MGP_AJ_T0082526.1 MGP_AJ_G0031880.1 mouse_genomes_project 7 25205576 25209887 - MGP_AJ_P0082526 Snrpa protein_coding nonsense_mediated_decay MGP_AJ_T0082527.1 MGP_AJ_G0031880.1 mouse_genomes_project 7 25208326 25210016 - Snrpa protein_coding retained_intron MGP_AJ_T0086143.1 MGP_AJ_G0032875.1 mouse_genomes_project 7 117228719 117264920 + MGP_AJ_P0086143 Nucb2 protein_coding protein_coding MGP_AJ_T0086144.1 MGP_AJ_G0032875.1 mouse_genomes_project 7 117228734 117233953 + Nucb2 protein_coding processed_transcript MGP_AJ_T0086145.1 MGP_AJ_G0032875.1 mouse_genomes_project 7 117228765 117264779 + MGP_AJ_P0086145 Nucb2 protein_coding protein_coding MGP_AJ_T0086146.1 MGP_AJ_G0032875.1 mouse_genomes_project 7 117253009 117260231 + MGP_AJ_P0086146 Nucb2 protein_coding nonsense_mediated_decay MGP_AJ_T0086777.1 MGP_AJ_G0033000.1 mouse_genomes_project 7 127849721 127854018 - MGP_AJ_P0086777 Maz protein_coding unknown_likely_coding MGP_AJ_T0086778.1 MGP_AJ_G0033000.1 mouse_genomes_project 7 127849730 127854051 - MGP_AJ_P0086778 Maz protein_coding protein_coding MGP_AJ_T0086779.1 MGP_AJ_G0033000.1 mouse_genomes_project 7 127849731 127853913 - MGP_AJ_P0086779 Maz protein_coding protein_coding MGP_AJ_T0086780.1 MGP_AJ_G0033000.1 mouse_genomes_project 7 127850486 127854171 - MGP_AJ_P0086780 Maz protein_coding protein_coding MGP_AJ_T0086781.1 MGP_AJ_G0033000.1 mouse_genomes_project 7 127850646 127852731 - Maz protein_coding retained_intron MGP_AJ_T0098721.1 MGP_AJ_G0036705.1 mouse_genomes_project 7 17693186 17693305 - n-R5s152 rRNA rRNA MGP_AJ_T0015801.1 MGP_AJ_G0013896.1 mouse_genomes_project 7 40127568 40129068 - processed_pseudogene processed_pseudogene MGP_AJ_T0015753.1 MGP_AJ_G0013848.1 mouse_genomes_project 7 23833182 23833351 + processed_pseudogene processed_pseudogene MGP_AJ_T0083495.1 MGP_AJ_G0032103.1 mouse_genomes_project 7 42477369 42485478 + Siglecf protein_coding retained_intron MGP_AJ_T0083496.1 MGP_AJ_G0032103.1 mouse_genomes_project 7 42477369 42485480 + MGP_AJ_P0083496 Siglecf protein_coding protein_coding MGP_AJ_T0083497.1 MGP_AJ_G0032103.1 mouse_genomes_project 7 42477411 42477872 + Siglecf protein_coding processed_transcript MGP_AJ_T0083498.1 MGP_AJ_G0032103.1 mouse_genomes_project 7 42477436 42485541 + MGP_AJ_P0083498 Siglecf protein_coding protein_coding MGP_AJ_T0083499.1 MGP_AJ_G0032103.1 mouse_genomes_project 7 42477550 42485299 + MGP_AJ_P0083499 Siglecf protein_coding protein_coding MGP_AJ_T0083500.1 MGP_AJ_G0032103.1 mouse_genomes_project 7 42477576 42484784 + MGP_AJ_P0083500 Siglecf protein_coding unknown_likely_coding MGP_AJ_T0083501.1 MGP_AJ_G0032103.1 mouse_genomes_project 7 42477576 42482628 + MGP_AJ_P0083501 Siglecf protein_coding protein_coding MGP_AJ_T0082585.1 MGP_AJ_G0031894.1 mouse_genomes_project 7 25551781 25559584 + MGP_AJ_P0082585 Hipk4 protein_coding protein_coding MGP_AJ_T0082586.1 MGP_AJ_G0031894.1 mouse_genomes_project 7 25555573 25559579 + MGP_AJ_P0082586 Hipk4 protein_coding protein_coding MGP_AJ_T0081681.1 MGP_AJ_G0031629.1 mouse_genomes_project 7 10166588 10170985 + MGP_AJ_P0081681 Rps5 protein_coding protein_coding MGP_AJ_T0081682.1 MGP_AJ_G0031629.1 mouse_genomes_project 7 10166588 10170984 + MGP_AJ_P0081682 Rps5 protein_coding protein_coding MGP_AJ_T0081683.1 MGP_AJ_G0031629.1 mouse_genomes_project 7 10166616 10170793 + MGP_AJ_P0081683 Rps5 protein_coding protein_coding MGP_AJ_T0081684.1 MGP_AJ_G0031629.1 mouse_genomes_project 7 10166629 10170519 + Rps5 protein_coding retained_intron MGP_AJ_T0081685.1 MGP_AJ_G0031629.1 mouse_genomes_project 7 10166634 10167663 + Rps5 protein_coding retained_intron MGP_AJ_T0081686.1 MGP_AJ_G0031629.1 mouse_genomes_project 7 10166735 10170793 + MGP_AJ_P0081686 Rps5 protein_coding protein_coding MGP_AJ_T0081687.1 MGP_AJ_G0031629.1 mouse_genomes_project 7 10170336 10170983 + Rps5 protein_coding retained_intron MGP_AJ_T0098729.1 MGP_AJ_G0036713.1 mouse_genomes_project 7 113803383 113803494 + Gm23662 rRNA rRNA MGP_AJ_T0085566.1 MGP_AJ_G0032644.1 mouse_genomes_project 7 103998720 103999677 + MGP_AJ_P0085566 Olfr618 protein_coding protein_coding MGP_AJ_T0085528.1 MGP_AJ_G0032609.1 mouse_genomes_project 7 103256699 103257668 - MGP_AJ_P0085528 Olfr571 protein_coding protein_coding MGP_AJ_T0082185.1 MGP_AJ_G0031793.1 mouse_genomes_project 7 21794591 21795621 + MGP_AJ_P0082185 Vmn1r183 protein_coding protein_coding MGP_AJ_T0008973.1 MGP_AJ_G0007233.1 mouse_genomes_project 7 93189926 93298667 + Gm26862 lincRNA lincRNA MGP_AJ_T0084167.1 MGP_AJ_G0032285.1 mouse_genomes_project 7 51793118 51794809 - MGP_AJ_P0084167 Fancf protein_coding protein_coding MGP_AJ_T0086453.1 MGP_AJ_G0032949.1 mouse_genomes_project 7 126261087 126278756 + MGP_AJ_P0086453 Kdm8 protein_coding protein_coding MGP_AJ_T0086454.1 MGP_AJ_G0032949.1 mouse_genomes_project 7 126261095 126276510 + MGP_AJ_P0086454 Kdm8 protein_coding protein_coding MGP_AJ_T0085053.1 MGP_AJ_G0032491.1 mouse_genomes_project 7 96392519 97129642 + MGP_AJ_P0085053 Tenm4 protein_coding protein_coding MGP_AJ_T0085054.1 MGP_AJ_G0032491.1 mouse_genomes_project 7 96427597 96653479 + Tenm4 protein_coding retained_intron MGP_AJ_T0085055.1 MGP_AJ_G0032491.1 mouse_genomes_project 7 96427647 96714582 + Tenm4 protein_coding processed_transcript MGP_AJ_T0085056.1 MGP_AJ_G0032491.1 mouse_genomes_project 7 96428078 96655307 + Tenm4 protein_coding retained_intron MGP_AJ_T0085057.1 MGP_AJ_G0032491.1 mouse_genomes_project 7 96428086 96770634 + MGP_AJ_P0085057 Tenm4 protein_coding protein_coding MGP_AJ_T0085058.1 MGP_AJ_G0032491.1 mouse_genomes_project 7 96428569 97132173 + MGP_AJ_P0085058 Tenm4 protein_coding protein_coding MGP_AJ_T0085059.1 MGP_AJ_G0032491.1 mouse_genomes_project 7 96429603 97129627 + MGP_AJ_P0085059 Tenm4 protein_coding protein_coding MGP_AJ_T0085060.1 MGP_AJ_G0032491.1 mouse_genomes_project 7 96738065 96770634 + MGP_AJ_P0085060 Tenm4 protein_coding protein_coding MGP_AJ_T0085061.1 MGP_AJ_G0032491.1 mouse_genomes_project 7 96862020 96952252 + Tenm4 protein_coding retained_intron MGP_AJ_T0085062.1 MGP_AJ_G0032491.1 mouse_genomes_project 7 96997952 97017708 + MGP_AJ_P0085062 Tenm4 protein_coding protein_coding MGP_AJ_T0085063.1 MGP_AJ_G0032491.1 mouse_genomes_project 7 97016615 97018545 + Tenm4 protein_coding processed_transcript MGP_AJ_T0085064.1 MGP_AJ_G0032491.1 mouse_genomes_project 7 97016615 97064608 + Tenm4 protein_coding retained_intron MGP_AJ_T0002292.1 MGP_AJ_G0002203.1 mouse_genomes_project 7 122027577 122028209 - TEC TEC MGP_AJ_T0102781.1 MGP_AJ_G0040522.1 mouse_genomes_project 7 11855232 11855710 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0081646.1 MGP_AJ_G0031610.1 mouse_genomes_project 7 9258081 9259456 + MGP_AJ_P0081646 Vmn1r77 protein_coding protein_coding MGP_AJ_T0101403.1 MGP_AJ_G0039369.1 mouse_genomes_project 7 43600961 43601051 + Snord88c snoRNA snoRNA MGP_AJ_T0005283.1 MGP_AJ_G0004481.1 mouse_genomes_project 7 122774856 122783023 + Gm44987 antisense antisense MGP_AJ_T0085910.1 MGP_AJ_G0032832.1 mouse_genomes_project 7 110402405 110426263 - MGP_AJ_P0085910 Nrip3 protein_coding protein_coding MGP_AJ_T0085911.1 MGP_AJ_G0032832.1 mouse_genomes_project 7 110402409 110425783 - MGP_AJ_P0085911 Nrip3 protein_coding protein_coding MGP_AJ_T0101417.1 MGP_AJ_G0039383.1 mouse_genomes_project 7 59292811 59292899 - Gm22496 snoRNA snoRNA MGP_AJ_T0082278.1 MGP_AJ_G0031821.1 mouse_genomes_project 7 22574648 22590438 - MGP_AJ_P0082278 Cd177 protein_coding protein_coding MGP_AJ_T0082279.1 MGP_AJ_G0031821.1 mouse_genomes_project 7 22575792 22581107 - Cd177 protein_coding retained_intron MGP_AJ_T0101437.1 MGP_AJ_G0039403.1 mouse_genomes_project 7 103096318 103096451 - Gm24210 snoRNA snoRNA MGP_AJ_T0083102.1 MGP_AJ_G0032019.1 mouse_genomes_project 7 28929015 28932621 - MGP_AJ_P0083102 Gapdhs protein_coding nonsense_mediated_decay MGP_AJ_T0083103.1 MGP_AJ_G0032019.1 mouse_genomes_project 7 28929020 28943316 - MGP_AJ_P0083103 Gapdhs protein_coding protein_coding MGP_AJ_T0083104.1 MGP_AJ_G0032019.1 mouse_genomes_project 7 28929127 28939075 - MGP_AJ_P0083104 Gapdhs protein_coding protein_coding MGP_AJ_T0010866.1 MGP_AJ_G0008988.1 mouse_genomes_project 7 44548390 44548449 + Mir7055 miRNA miRNA MGP_AJ_T0102864.1 MGP_AJ_G0040604.1 mouse_genomes_project 7 85126107 85126327 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0015867.1 MGP_AJ_G0013962.1 mouse_genomes_project 7 80553216 80553684 + processed_pseudogene processed_pseudogene MGP_AJ_T0081982.1 MGP_AJ_G0031730.1 mouse_genomes_project 7 16664586 16695170 + MGP_AJ_P0081982 Sympk protein_coding protein_coding MGP_AJ_T0081983.1 MGP_AJ_G0031730.1 mouse_genomes_project 7 16664629 16676649 + MGP_AJ_P0081983 Sympk protein_coding protein_coding MGP_AJ_T0081984.1 MGP_AJ_G0031730.1 mouse_genomes_project 7 16664632 16675762 + Sympk protein_coding retained_intron MGP_AJ_T0081985.1 MGP_AJ_G0031730.1 mouse_genomes_project 7 16664635 16692329 + MGP_AJ_P0081985 Sympk protein_coding nonsense_mediated_decay MGP_AJ_T0081986.1 MGP_AJ_G0031730.1 mouse_genomes_project 7 16686315 16690637 + Sympk protein_coding processed_transcript MGP_AJ_T0081987.1 MGP_AJ_G0031730.1 mouse_genomes_project 7 16692913 16695165 + Sympk protein_coding processed_transcript MGP_AJ_T0081988.1 MGP_AJ_G0031730.1 mouse_genomes_project 7 16692980 16695171 + MGP_AJ_P0081988 Sympk protein_coding protein_coding MGP_AJ_T0081989.1 MGP_AJ_G0031730.1 mouse_genomes_project 7 16693010 16694461 + Sympk protein_coding retained_intron MGP_AJ_T0102889.1 MGP_AJ_G0040629.1 mouse_genomes_project 7 102901857 102902792 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0084648.1 MGP_AJ_G0032380.1 mouse_genomes_project 7 80060227 80122064 + MGP_AJ_P0084648 Zfp710 protein_coding protein_coding MGP_AJ_T0084649.1 MGP_AJ_G0032380.1 mouse_genomes_project 7 80062989 80116344 + MGP_AJ_P0084649 Zfp710 protein_coding protein_coding MGP_AJ_T0084650.1 MGP_AJ_G0032380.1 mouse_genomes_project 7 80116251 80125729 + MGP_AJ_P0084650 Zfp710 protein_coding protein_coding MGP_AJ_T0002298.1 MGP_AJ_G0002209.1 mouse_genomes_project 7 123216593 123219745 + TEC TEC MGP_AJ_T0087494.1 MGP_AJ_G0033165.1 mouse_genomes_project 7 141588550 141589483 + MGP_AJ_P0087494 protein_coding protein_coding MGP_AJ_T0010906.1 MGP_AJ_G0009028.1 mouse_genomes_project 7 99810107 99810202 + Mir326 miRNA miRNA MGP_AJ_T0081523.1 MGP_AJ_G0031543.1 mouse_genomes_project 7 1882734 1885458 + MGP_AJ_P0081523 Nat14 protein_coding protein_coding MGP_AJ_T0083577.1 MGP_AJ_G0032132.1 mouse_genomes_project 7 43014788 43019427 + MGP_AJ_P0083577 Klk4 protein_coding protein_coding MGP_AJ_T0010863.1 MGP_AJ_G0008985.1 mouse_genomes_project 7 44383734 44383796 - Mir7054 miRNA miRNA MGP_AJ_T0083459.1 MGP_AJ_G0032090.1 mouse_genomes_project 7 40357116 40384493 - MGP_AJ_P0083459 Gm6871 protein_coding protein_coding MGP_AJ_T0083460.1 MGP_AJ_G0032090.1 mouse_genomes_project 7 40357791 40371432 - MGP_AJ_P0083460 Gm6871 protein_coding protein_coding MGP_AJ_T0083461.1 MGP_AJ_G0032090.1 mouse_genomes_project 7 40372737 40384463 - MGP_AJ_P0083461 Gm6871 protein_coding protein_coding MGP_AJ_T0018423.1 MGP_AJ_G0015672.1 mouse_genomes_project 7 129261302 129263328 - Gm15503 processed_transcript retained_intron MGP_AJ_T0018424.1 MGP_AJ_G0015672.1 mouse_genomes_project 7 129262754 129264676 - Gm15503 processed_transcript sense_intronic MGP_AJ_T0086858.1 MGP_AJ_G0033022.1 mouse_genomes_project 7 128309408 128321690 + Prr14 protein_coding processed_transcript MGP_AJ_T0086859.1 MGP_AJ_G0033022.1 mouse_genomes_project 7 128321069 128327776 + MGP_AJ_P0086859 Prr14 protein_coding protein_coding MGP_AJ_T0086860.1 MGP_AJ_G0033022.1 mouse_genomes_project 7 128321712 128324548 + MGP_AJ_P0086860 Prr14 protein_coding protein_coding MGP_AJ_T0086861.1 MGP_AJ_G0033022.1 mouse_genomes_project 7 128321722 128324411 + MGP_AJ_P0086861 Prr14 protein_coding protein_coding MGP_AJ_T0086862.1 MGP_AJ_G0033022.1 mouse_genomes_project 7 128321745 128324519 + Prr14 protein_coding retained_intron MGP_AJ_T0086863.1 MGP_AJ_G0033022.1 mouse_genomes_project 7 128322142 128323798 + Prr14 protein_coding retained_intron MGP_AJ_T0086864.1 MGP_AJ_G0033022.1 mouse_genomes_project 7 128322183 128327775 + MGP_AJ_P0086864 Prr14 protein_coding protein_coding MGP_AJ_T0086865.1 MGP_AJ_G0033022.1 mouse_genomes_project 7 128322594 128325902 + Prr14 protein_coding retained_intron MGP_AJ_T0086866.1 MGP_AJ_G0033022.1 mouse_genomes_project 7 128322648 128327677 + MGP_AJ_P0086866 Prr14 protein_coding unknown_likely_coding MGP_AJ_T0086867.1 MGP_AJ_G0033022.1 mouse_genomes_project 7 128324316 128325960 + MGP_AJ_P0086867 Prr14 protein_coding nonsense_mediated_decay MGP_AJ_T0086868.1 MGP_AJ_G0033022.1 mouse_genomes_project 7 128326517 128327774 + Prr14 protein_coding retained_intron MGP_AJ_T0086869.1 MGP_AJ_G0033022.1 mouse_genomes_project 7 128326535 128327772 + MGP_AJ_P0086869 Prr14 protein_coding protein_coding MGP_AJ_T0085532.1 MGP_AJ_G0032613.1 mouse_genomes_project 7 103314377 103315316 + MGP_AJ_P0085532 Olfr576 protein_coding protein_coding MGP_AJ_T0085533.1 MGP_AJ_G0032613.1 mouse_genomes_project 7 103314377 103324437 + MGP_AJ_P0085533 Olfr576 protein_coding protein_coding MGP_AJ_T0015761.1 MGP_AJ_G0013856.1 mouse_genomes_project 7 25928887 25935200 - processed_pseudogene processed_pseudogene MGP_AJ_T0081932.1 MGP_AJ_G0031702.1 mouse_genomes_project 7 14641855 14657034 + MGP_AJ_P0081932 Ceacam3 protein_coding protein_coding MGP_AJ_T0010851.1 MGP_AJ_G0008973.1 mouse_genomes_project 7 27248709 27248768 - Mir1963 miRNA miRNA MGP_AJ_T0102807.1 MGP_AJ_G0040547.1 mouse_genomes_project 7 32027457 32027826 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0008933.1 MGP_AJ_G0007211.1 mouse_genomes_project 7 73915283 73924783 - Gm45004 lincRNA lincRNA MGP_AJ_T0102796.1 MGP_AJ_G0040537.1 mouse_genomes_project 7 21597564 21598885 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0015717.1 MGP_AJ_G0013812.1 mouse_genomes_project 7 11210478 11221468 - processed_pseudogene processed_pseudogene MGP_AJ_T0085637.1 MGP_AJ_G0032690.1 mouse_genomes_project 7 104719540 104728687 - MGP_AJ_P0085637 Trim30c protein_coding protein_coding MGP_AJ_T0015768.1 MGP_AJ_G0013863.1 mouse_genomes_project 7 30835186 30836180 + processed_pseudogene processed_pseudogene MGP_AJ_T0010825.1 MGP_AJ_G0008947.1 mouse_genomes_project 7 125760 125839 + Mir291b miRNA miRNA MGP_AJ_T0084276.1 MGP_AJ_G0032310.1 mouse_genomes_project 7 63304169 63635288 + MGP_AJ_P0084276 Otud7a protein_coding protein_coding MGP_AJ_T0084277.1 MGP_AJ_G0032310.1 mouse_genomes_project 7 63304195 63483813 + Otud7a protein_coding processed_transcript MGP_AJ_T0084278.1 MGP_AJ_G0032310.1 mouse_genomes_project 7 63516523 63634249 + MGP_AJ_P0084278 Otud7a protein_coding protein_coding MGP_AJ_T0084279.1 MGP_AJ_G0032310.1 mouse_genomes_project 7 63552848 63634991 + MGP_AJ_P0084279 Otud7a protein_coding unknown_likely_coding MGP_AJ_T0084280.1 MGP_AJ_G0032310.1 mouse_genomes_project 7 63630971 63634185 + MGP_AJ_P0084280 Otud7a protein_coding protein_coding MGP_AJ_T0101442.1 MGP_AJ_G0039408.1 mouse_genomes_project 7 110671123 110671256 + Gm25636 snoRNA snoRNA MGP_AJ_T0008995.1 MGP_AJ_G0007247.1 mouse_genomes_project 7 114429398 114451911 + Gm29507 lincRNA lincRNA MGP_AJ_T0084168.1 MGP_AJ_G0032286.1 mouse_genomes_project 7 51794556 51940644 + MGP_AJ_P0084168 Gas2 protein_coding nonsense_mediated_decay MGP_AJ_T0084169.1 MGP_AJ_G0032286.1 mouse_genomes_project 7 51794922 51942755 + MGP_AJ_P0084169 Gas2 protein_coding unknown_likely_coding MGP_AJ_T0084170.1 MGP_AJ_G0032286.1 mouse_genomes_project 7 51794968 51906857 + MGP_AJ_P0084170 Gas2 protein_coding protein_coding MGP_AJ_T0084171.1 MGP_AJ_G0032286.1 mouse_genomes_project 7 51796458 51796952 + Gas2 protein_coding retained_intron MGP_AJ_T0084172.1 MGP_AJ_G0032286.1 mouse_genomes_project 7 51813014 51880431 + MGP_AJ_P0084172 Gas2 protein_coding protein_coding MGP_AJ_T0084173.1 MGP_AJ_G0032286.1 mouse_genomes_project 7 51862890 51880469 + Gas2 protein_coding processed_transcript MGP_AJ_T0084174.1 MGP_AJ_G0032286.1 mouse_genomes_project 7 51880385 51897310 + Gas2 protein_coding processed_transcript MGP_AJ_T0015953.1 MGP_AJ_G0014048.1 mouse_genomes_project 7 141766555 141767042 + processed_pseudogene processed_pseudogene MGP_AJ_T0086992.1 MGP_AJ_G0033044.1 mouse_genomes_project 7 128730394 128740846 - MGP_AJ_P0086992 protein_coding nonsense_mediated_decay MGP_AJ_T0085548.1 MGP_AJ_G0032627.1 mouse_genomes_project 7 103712749 103732592 + MGP_AJ_P0085548 Olfr598 protein_coding protein_coding MGP_AJ_T0011695.1 MGP_AJ_G0009817.1 mouse_genomes_project 7 123260866 123261135 + Gm26414 misc_RNA misc_RNA MGP_AJ_T0084117.1 MGP_AJ_G0032272.1 mouse_genomes_project 7 48563696 48564705 - MGP_AJ_P0084117 Mrgprb3 protein_coding protein_coding MGP_AJ_T0084839.1 MGP_AJ_G0032412.1 mouse_genomes_project 7 81691594 81799649 - MGP_AJ_P0084839 Homer2 protein_coding protein_coding MGP_AJ_T0084840.1 MGP_AJ_G0032412.1 mouse_genomes_project 7 81691594 81785494 - MGP_AJ_P0084840 Homer2 protein_coding protein_coding MGP_AJ_T0084841.1 MGP_AJ_G0032412.1 mouse_genomes_project 7 81701382 81799487 - MGP_AJ_P0084841 Homer2 protein_coding unknown_likely_coding MGP_AJ_T0015747.1 MGP_AJ_G0013842.1 mouse_genomes_project 7 23290471 23291783 - processed_pseudogene processed_pseudogene MGP_AJ_T0087824.1 MGP_AJ_G0033242.1 mouse_genomes_project 7 143491455 143509883 + Tnnt3 protein_coding processed_transcript MGP_AJ_T0087825.1 MGP_AJ_G0033242.1 mouse_genomes_project 7 143491455 143509883 + MGP_AJ_P0087825 Tnnt3 protein_coding protein_coding MGP_AJ_T0087826.1 MGP_AJ_G0033242.1 mouse_genomes_project 7 143491455 143509883 + MGP_AJ_P0087826 Tnnt3 protein_coding protein_coding MGP_AJ_T0087827.1 MGP_AJ_G0033242.1 mouse_genomes_project 7 143491455 143509883 + MGP_AJ_P0087827 Tnnt3 protein_coding protein_coding MGP_AJ_T0087828.1 MGP_AJ_G0033242.1 mouse_genomes_project 7 143491455 143509883 + MGP_AJ_P0087828 Tnnt3 protein_coding protein_coding MGP_AJ_T0087829.1 MGP_AJ_G0033242.1 mouse_genomes_project 7 143491455 143509883 + MGP_AJ_P0087829 Tnnt3 protein_coding protein_coding MGP_AJ_T0087830.1 MGP_AJ_G0033242.1 mouse_genomes_project 7 143491455 143509883 + MGP_AJ_P0087830 Tnnt3 protein_coding protein_coding MGP_AJ_T0087831.1 MGP_AJ_G0033242.1 mouse_genomes_project 7 143491455 143509883 + MGP_AJ_P0087831 Tnnt3 protein_coding protein_coding MGP_AJ_T0087832.1 MGP_AJ_G0033242.1 mouse_genomes_project 7 143491462 143509878 + MGP_AJ_P0087832 Tnnt3 protein_coding protein_coding MGP_AJ_T0087833.1 MGP_AJ_G0033242.1 mouse_genomes_project 7 143491462 143509878 + MGP_AJ_P0087833 Tnnt3 protein_coding protein_coding MGP_AJ_T0087834.1 MGP_AJ_G0033242.1 mouse_genomes_project 7 143491462 143509878 + MGP_AJ_P0087834 Tnnt3 protein_coding protein_coding MGP_AJ_T0087835.1 MGP_AJ_G0033242.1 mouse_genomes_project 7 143491462 143509878 + MGP_AJ_P0087835 Tnnt3 protein_coding protein_coding MGP_AJ_T0087836.1 MGP_AJ_G0033242.1 mouse_genomes_project 7 143491483 143509882 + MGP_AJ_P0087836 Tnnt3 protein_coding protein_coding MGP_AJ_T0087837.1 MGP_AJ_G0033242.1 mouse_genomes_project 7 143491491 143509879 + MGP_AJ_P0087837 Tnnt3 protein_coding protein_coding MGP_AJ_T0087838.1 MGP_AJ_G0033242.1 mouse_genomes_project 7 143494236 143505411 + MGP_AJ_P0087838 Tnnt3 protein_coding protein_coding MGP_AJ_T0087839.1 MGP_AJ_G0033242.1 mouse_genomes_project 7 143494239 143506497 + MGP_AJ_P0087839 Tnnt3 protein_coding protein_coding MGP_AJ_T0087840.1 MGP_AJ_G0033242.1 mouse_genomes_project 7 143494257 143509705 + MGP_AJ_P0087840 Tnnt3 protein_coding protein_coding MGP_AJ_T0087841.1 MGP_AJ_G0033242.1 mouse_genomes_project 7 143494257 143509705 + MGP_AJ_P0087841 Tnnt3 protein_coding protein_coding MGP_AJ_T0087842.1 MGP_AJ_G0033242.1 mouse_genomes_project 7 143494257 143509705 + MGP_AJ_P0087842 Tnnt3 protein_coding protein_coding MGP_AJ_T0087843.1 MGP_AJ_G0033242.1 mouse_genomes_project 7 143494257 143509705 + MGP_AJ_P0087843 Tnnt3 protein_coding protein_coding MGP_AJ_T0087844.1 MGP_AJ_G0033242.1 mouse_genomes_project 7 143494257 143509705 + MGP_AJ_P0087844 Tnnt3 protein_coding protein_coding MGP_AJ_T0087845.1 MGP_AJ_G0033242.1 mouse_genomes_project 7 143494257 143509705 + MGP_AJ_P0087845 Tnnt3 protein_coding protein_coding MGP_AJ_T0087846.1 MGP_AJ_G0033242.1 mouse_genomes_project 7 143494257 143509705 + MGP_AJ_P0087846 Tnnt3 protein_coding protein_coding MGP_AJ_T0087847.1 MGP_AJ_G0033242.1 mouse_genomes_project 7 143494257 143509705 + MGP_AJ_P0087847 Tnnt3 protein_coding protein_coding MGP_AJ_T0087848.1 MGP_AJ_G0033242.1 mouse_genomes_project 7 143497896 143506460 + Tnnt3 protein_coding retained_intron MGP_AJ_T0087849.1 MGP_AJ_G0033242.1 mouse_genomes_project 7 143508004 143509884 + Tnnt3 protein_coding retained_intron MGP_AJ_T0082490.1 MGP_AJ_G0031868.1 mouse_genomes_project 7 24619289 24640892 - MGP_AJ_P0082490 Cyp2b23 protein_coding protein_coding MGP_AJ_T0010891.1 MGP_AJ_G0009013.1 mouse_genomes_project 7 61963832 61963920 - Mir344i miRNA miRNA MGP_AJ_T0084163.1 MGP_AJ_G0032282.1 mouse_genomes_project 7 50490519 50491860 + MGP_AJ_P0084163 4933405O20Rik protein_coding protein_coding MGP_AJ_T0085801.1 MGP_AJ_G0032760.1 mouse_genomes_project 7 107490054 107491005 - MGP_AJ_P0085801 protein_coding protein_coding MGP_AJ_T0081521.1 MGP_AJ_G0031541.1 mouse_genomes_project 7 1822704 1856189 + MGP_AJ_P0081521 Isoc2a protein_coding protein_coding MGP_AJ_T0008854.1 MGP_AJ_G0007152.1 mouse_genomes_project 7 35804512 35807718 - lincRNA lincRNA MGP_AJ_T0102859.1 MGP_AJ_G0040599.1 mouse_genomes_project 7 84891304 84893599 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0082194.1 MGP_AJ_G0031796.1 mouse_genomes_project 7 21883362 21885249 + Zfp235 protein_coding retained_intron MGP_AJ_T0082195.1 MGP_AJ_G0031796.1 mouse_genomes_project 7 21883367 21886057 + Zfp235 protein_coding processed_transcript MGP_AJ_T0082196.1 MGP_AJ_G0031796.1 mouse_genomes_project 7 21883421 21886061 + Zfp235 protein_coding processed_transcript MGP_AJ_T0082197.1 MGP_AJ_G0031796.1 mouse_genomes_project 7 21883435 21892401 + MGP_AJ_P0082197 Zfp235 protein_coding protein_coding MGP_AJ_T0101416.1 MGP_AJ_G0039382.1 mouse_genomes_project 7 59292645 59301467 - snoRNA snoRNA MGP_AJ_T0082179.1 MGP_AJ_G0031787.1 mouse_genomes_project 7 21290279 21291800 + MGP_AJ_P0082179 protein_coding protein_coding MGP_AJ_T0085602.1 MGP_AJ_G0032678.1 mouse_genomes_project 7 104556335 104558992 - MGP_AJ_P0085602 Ubqln3 protein_coding protein_coding MGP_AJ_T0005253.1 MGP_AJ_G0004462.1 mouse_genomes_project 7 97011409 97021526 - Gm15413 antisense antisense MGP_AJ_T0086842.1 MGP_AJ_G0033015.1 mouse_genomes_project 7 128178949 128181578 - MGP_AJ_P0086842 Zfp768 protein_coding protein_coding MGP_AJ_T0086843.1 MGP_AJ_G0033015.1 mouse_genomes_project 7 128178949 128181744 - MGP_AJ_P0086843 Zfp768 protein_coding protein_coding MGP_AJ_T0011682.1 MGP_AJ_G0009804.1 mouse_genomes_project 7 28521144 28521515 + Gm24757 misc_RNA misc_RNA MGP_AJ_T0008996.1 MGP_AJ_G0007248.1 mouse_genomes_project 7 115027301 115125904 - 4933406I18Rik lincRNA lincRNA MGP_AJ_T0008997.1 MGP_AJ_G0007248.1 mouse_genomes_project 7 115072884 115125764 - 4933406I18Rik lincRNA lincRNA MGP_AJ_T0018347.1 MGP_AJ_G0015643.1 mouse_genomes_project 7 43612552 43612997 + processed_transcript lincRNA MGP_AJ_T0018348.1 MGP_AJ_G0015643.1 mouse_genomes_project 7 43612635 43612994 + processed_transcript retained_intron MGP_AJ_T0018349.1 MGP_AJ_G0015643.1 mouse_genomes_project 7 43612666 43612995 + processed_transcript retained_intron MGP_AJ_T0008917.1 MGP_AJ_G0007198.1 mouse_genomes_project 7 72958211 72961405 + Gm44725 lincRNA lincRNA MGP_AJ_T0085167.1 MGP_AJ_G0032513.1 mouse_genomes_project 7 98673786 98711348 + MGP_AJ_P0085167 Gucy2d protein_coding protein_coding MGP_AJ_T0085168.1 MGP_AJ_G0032513.1 mouse_genomes_project 7 98676795 98711347 + MGP_AJ_P0085168 Gucy2d protein_coding protein_coding MGP_AJ_T0085169.1 MGP_AJ_G0032513.1 mouse_genomes_project 7 98701568 98709048 + MGP_AJ_P0085169 Gucy2d protein_coding protein_coding MGP_AJ_T0085170.1 MGP_AJ_G0032513.1 mouse_genomes_project 7 98705401 98711347 + Gucy2d protein_coding processed_transcript MGP_AJ_T0083286.1 MGP_AJ_G0032056.1 mouse_genomes_project 7 32688582 32689038 + MGP_AJ_P0083286 Gm6096 protein_coding protein_coding MGP_AJ_T0087714.1 MGP_AJ_G0033215.1 mouse_genomes_project 7 142458051 142464676 + MGP_AJ_P0087714 Cracr2b protein_coding protein_coding MGP_AJ_T0087715.1 MGP_AJ_G0033215.1 mouse_genomes_project 7 142458852 142461987 + MGP_AJ_P0087715 Cracr2b protein_coding protein_coding MGP_AJ_T0087716.1 MGP_AJ_G0033215.1 mouse_genomes_project 7 142458917 142460420 + MGP_AJ_P0087716 Cracr2b protein_coding protein_coding MGP_AJ_T0087717.1 MGP_AJ_G0033215.1 mouse_genomes_project 7 142460068 142461687 + MGP_AJ_P0087717 Cracr2b protein_coding protein_coding MGP_AJ_T0087718.1 MGP_AJ_G0033215.1 mouse_genomes_project 7 142460368 142464135 + MGP_AJ_P0087718 Cracr2b protein_coding protein_coding MGP_AJ_T0087719.1 MGP_AJ_G0033215.1 mouse_genomes_project 7 142461001 142461790 + Cracr2b protein_coding retained_intron MGP_AJ_T0087720.1 MGP_AJ_G0033215.1 mouse_genomes_project 7 142462051 142463740 + Cracr2b protein_coding retained_intron MGP_AJ_T0087721.1 MGP_AJ_G0033215.1 mouse_genomes_project 7 142462185 142464421 + Cracr2b protein_coding retained_intron MGP_AJ_T0087722.1 MGP_AJ_G0033215.1 mouse_genomes_project 7 142463736 142464676 + MGP_AJ_P0087722 Cracr2b protein_coding protein_coding MGP_AJ_T0008902.1 MGP_AJ_G0007186.1 mouse_genomes_project 7 68127387 68220127 + lincRNA lincRNA MGP_AJ_T0008903.1 MGP_AJ_G0007186.1 mouse_genomes_project 7 68157323 68220125 + lincRNA lincRNA MGP_AJ_T0008904.1 MGP_AJ_G0007186.1 mouse_genomes_project 7 68188156 68210753 + lincRNA lincRNA MGP_AJ_T0008807.1 MGP_AJ_G0007109.1 mouse_genomes_project 7 331303 333084 - 3300002P13Rik lincRNA lincRNA MGP_AJ_T0082271.1 MGP_AJ_G0031817.1 mouse_genomes_project 7 22436346 22440911 + MGP_AJ_P0082271 Lypd3 protein_coding protein_coding MGP_AJ_T0081582.1 MGP_AJ_G0031572.1 mouse_genomes_project 7 3233606 3264301 + MGP_AJ_P0081582 Gm6792 protein_coding protein_coding MGP_AJ_T0081583.1 MGP_AJ_G0031572.1 mouse_genomes_project 7 3240237 3264508 + Gm6792 protein_coding processed_transcript MGP_AJ_T0081584.1 MGP_AJ_G0031572.1 mouse_genomes_project 7 3242033 3264301 + MGP_AJ_P0081584 Gm6792 protein_coding protein_coding MGP_AJ_T0086157.1 MGP_AJ_G0032878.1 mouse_genomes_project 7 118854513 118864373 - MGP_AJ_P0086157 Arl6ip1 protein_coding protein_coding MGP_AJ_T0086158.1 MGP_AJ_G0032878.1 mouse_genomes_project 7 118855872 118863821 - Arl6ip1 protein_coding processed_transcript MGP_AJ_T0086159.1 MGP_AJ_G0032878.1 mouse_genomes_project 7 118855920 118864287 - MGP_AJ_P0086159 Arl6ip1 protein_coding nonsense_mediated_decay MGP_AJ_T0086160.1 MGP_AJ_G0032878.1 mouse_genomes_project 7 118856822 118864285 - MGP_AJ_P0086160 Arl6ip1 protein_coding protein_coding MGP_AJ_T0086161.1 MGP_AJ_G0032878.1 mouse_genomes_project 7 118856849 118864271 - MGP_AJ_P0086161 Arl6ip1 protein_coding nonsense_mediated_decay MGP_AJ_T0086162.1 MGP_AJ_G0032878.1 mouse_genomes_project 7 118860995 118864283 - Arl6ip1 protein_coding retained_intron MGP_AJ_T0010888.1 MGP_AJ_G0009010.1 mouse_genomes_project 7 61858154 61858225 - Mir344g miRNA miRNA MGP_AJ_T0082623.1 MGP_AJ_G0031900.1 mouse_genomes_project 7 25725311 25743867 + MGP_AJ_P0082623 Zfp607b protein_coding protein_coding MGP_AJ_T0082625.1 MGP_AJ_G0031900.1 mouse_genomes_project 7 25728473 25741450 + MGP_AJ_P0082625 Zfp607b protein_coding protein_coding MGP_AJ_T0102769.1 MGP_AJ_G0040510.1 mouse_genomes_project 7 9627135 9627826 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0008926.1 MGP_AJ_G0007205.1 mouse_genomes_project 7 73488034 73493711 + Gm44734 lincRNA lincRNA MGP_AJ_T0008912.1 MGP_AJ_G0007193.1 mouse_genomes_project 7 71795903 71827233 + 4930441H08Rik lincRNA lincRNA MGP_AJ_T0015783.1 MGP_AJ_G0013878.1 mouse_genomes_project 7 32303755 32304529 + processed_pseudogene processed_pseudogene MGP_AJ_T0015683.1 MGP_AJ_G0013778.1 mouse_genomes_project 7 192397 193277 - processed_pseudogene processed_pseudogene MGP_AJ_T0086770.1 MGP_AJ_G0032999.1 mouse_genomes_project 7 127845127 127848808 - MGP_AJ_P0086770 Prrt2 protein_coding protein_coding MGP_AJ_T0086771.1 MGP_AJ_G0032999.1 mouse_genomes_project 7 127845139 127848571 - Prrt2 protein_coding retained_intron MGP_AJ_T0086772.1 MGP_AJ_G0032999.1 mouse_genomes_project 7 127845244 127847499 - MGP_AJ_P0086772 Prrt2 protein_coding protein_coding MGP_AJ_T0086773.1 MGP_AJ_G0032999.1 mouse_genomes_project 7 127845754 127847192 - MGP_AJ_P0086773 Prrt2 protein_coding nonsense_mediated_decay MGP_AJ_T0086774.1 MGP_AJ_G0032999.1 mouse_genomes_project 7 127846103 127848553 - Prrt2 protein_coding processed_transcript MGP_AJ_T0086775.1 MGP_AJ_G0032999.1 mouse_genomes_project 7 127846300 127848734 - MGP_AJ_P0086775 Prrt2 protein_coding protein_coding MGP_AJ_T0086776.1 MGP_AJ_G0032999.1 mouse_genomes_project 7 127846991 127847952 - Prrt2 protein_coding processed_transcript MGP_AJ_T0018418.1 MGP_AJ_G0015668.1 mouse_genomes_project 7 127717428 127723047 + Gm20650 processed_transcript processed_transcript MGP_AJ_T0102842.1 MGP_AJ_G0040582.1 mouse_genomes_project 7 47296654 47296856 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0082077.1 MGP_AJ_G0031751.1 mouse_genomes_project 7 17040078 17049486 - MGP_AJ_P0082077 Klc3 protein_coding protein_coding MGP_AJ_T0082078.1 MGP_AJ_G0031751.1 mouse_genomes_project 7 17040081 17045300 - MGP_AJ_P0082078 Klc3 protein_coding protein_coding MGP_AJ_T0082079.1 MGP_AJ_G0031751.1 mouse_genomes_project 7 17040081 17045257 - MGP_AJ_P0082079 Klc3 protein_coding protein_coding MGP_AJ_T0082080.1 MGP_AJ_G0031751.1 mouse_genomes_project 7 17040142 17041624 - Klc3 protein_coding retained_intron MGP_AJ_T0082081.1 MGP_AJ_G0031751.1 mouse_genomes_project 7 17040205 17044929 - MGP_AJ_P0082081 Klc3 protein_coding protein_coding MGP_AJ_T0082082.1 MGP_AJ_G0031751.1 mouse_genomes_project 7 17040995 17042224 - Klc3 protein_coding retained_intron MGP_AJ_T0082083.1 MGP_AJ_G0031751.1 mouse_genomes_project 7 17041384 17049209 - MGP_AJ_P0082083 Klc3 protein_coding unknown_likely_coding MGP_AJ_T0010867.1 MGP_AJ_G0008989.1 mouse_genomes_project 7 46511479 46511538 - Mir7056 miRNA miRNA MGP_AJ_T0085540.1 MGP_AJ_G0032620.1 mouse_genomes_project 7 103509513 103510467 - MGP_AJ_P0085540 Olfr586 protein_coding protein_coding MGP_AJ_T0015725.1 MGP_AJ_G0013820.1 mouse_genomes_project 7 14089497 14089612 + processed_pseudogene processed_pseudogene MGP_AJ_T0084587.1 MGP_AJ_G0032367.1 mouse_genomes_project 7 79398226 79408213 + MGP_AJ_P0084587 Fanci protein_coding protein_coding MGP_AJ_T0084588.1 MGP_AJ_G0032367.1 mouse_genomes_project 7 79398613 79416030 + MGP_AJ_P0084588 Fanci protein_coding protein_coding MGP_AJ_T0084589.1 MGP_AJ_G0032367.1 mouse_genomes_project 7 79398617 79457525 + MGP_AJ_P0084589 Fanci protein_coding protein_coding MGP_AJ_T0084590.1 MGP_AJ_G0032367.1 mouse_genomes_project 7 79398658 79457525 + MGP_AJ_P0084590 Fanci protein_coding nonsense_mediated_decay MGP_AJ_T0084591.1 MGP_AJ_G0032367.1 mouse_genomes_project 7 79405466 79442806 + MGP_AJ_P0084591 Fanci protein_coding protein_coding MGP_AJ_T0084592.1 MGP_AJ_G0032367.1 mouse_genomes_project 7 79419759 79434351 + MGP_AJ_P0084592 Fanci protein_coding nonsense_mediated_decay MGP_AJ_T0084593.1 MGP_AJ_G0032367.1 mouse_genomes_project 7 79447874 79452987 + MGP_AJ_P0084593 Fanci protein_coding nonsense_mediated_decay MGP_AJ_T0018415.1 MGP_AJ_G0015667.1 mouse_genomes_project 7 127593861 127602541 - Gm9967 processed_transcript antisense MGP_AJ_T0018416.1 MGP_AJ_G0015667.1 mouse_genomes_project 7 127599438 127602529 - Gm9967 processed_transcript antisense MGP_AJ_T0018417.1 MGP_AJ_G0015667.1 mouse_genomes_project 7 127600709 127602581 - Gm9967 processed_transcript retained_intron MGP_AJ_T0015776.1 MGP_AJ_G0013871.1 mouse_genomes_project 7 30835190 30836175 + processed_pseudogene processed_pseudogene MGP_AJ_T0084886.1 MGP_AJ_G0032424.1 mouse_genomes_project 7 82962009 82966054 + MGP_AJ_P0084886 Mex3b protein_coding protein_coding MGP_AJ_T0086174.1 MGP_AJ_G0032882.1 mouse_genomes_project 7 119251065 119274604 - MGP_AJ_P0086174 Coq7 protein_coding protein_coding MGP_AJ_T0086175.1 MGP_AJ_G0032882.1 mouse_genomes_project 7 119266364 119274659 - MGP_AJ_P0086175 Coq7 protein_coding protein_coding MGP_AJ_T0086176.1 MGP_AJ_G0032882.1 mouse_genomes_project 7 119268106 119274617 - Coq7 protein_coding retained_intron MGP_AJ_T0081414.1 MGP_AJ_G0031520.1 mouse_genomes_project 7 1400631 1421090 - MGP_AJ_P0081414 Ppp1r12c protein_coding protein_coding MGP_AJ_T0081415.1 MGP_AJ_G0031520.1 mouse_genomes_project 7 1400631 1421409 - MGP_AJ_P0081415 Ppp1r12c protein_coding protein_coding MGP_AJ_T0081416.1 MGP_AJ_G0031520.1 mouse_genomes_project 7 1400634 1403144 - Ppp1r12c protein_coding retained_intron MGP_AJ_T0081417.1 MGP_AJ_G0031520.1 mouse_genomes_project 7 1400699 1401746 - Ppp1r12c protein_coding processed_transcript MGP_AJ_T0081418.1 MGP_AJ_G0031520.1 mouse_genomes_project 7 1402745 1403611 - Ppp1r12c protein_coding retained_intron MGP_AJ_T0081419.1 MGP_AJ_G0031520.1 mouse_genomes_project 7 1403051 1404426 - Ppp1r12c protein_coding retained_intron MGP_AJ_T0081420.1 MGP_AJ_G0031520.1 mouse_genomes_project 7 1403128 1404820 - Ppp1r12c protein_coding retained_intron MGP_AJ_T0081421.1 MGP_AJ_G0031520.1 mouse_genomes_project 7 1404317 1405044 - Ppp1r12c protein_coding retained_intron MGP_AJ_T0081422.1 MGP_AJ_G0031520.1 mouse_genomes_project 7 1405262 1405846 - Ppp1r12c protein_coding retained_intron MGP_AJ_T0081423.1 MGP_AJ_G0031520.1 mouse_genomes_project 7 1408278 1421393 - Ppp1r12c protein_coding retained_intron MGP_AJ_T0081424.1 MGP_AJ_G0031520.1 mouse_genomes_project 7 1408917 1421258 - MGP_AJ_P0081424 Ppp1r12c protein_coding nonsense_mediated_decay MGP_AJ_T0101431.1 MGP_AJ_G0039397.1 mouse_genomes_project 7 93331995 93332121 - Gm25860 snoRNA snoRNA MGP_AJ_T0081667.1 MGP_AJ_G0031625.1 mouse_genomes_project 7 10046349 10060242 - MGP_AJ_P0081667 Zfp329 protein_coding protein_coding MGP_AJ_T0081668.1 MGP_AJ_G0031625.1 mouse_genomes_project 7 10046354 10060246 - MGP_AJ_P0081668 Zfp329 protein_coding protein_coding MGP_AJ_T0081669.1 MGP_AJ_G0031625.1 mouse_genomes_project 7 10047431 10049425 - Zfp329 protein_coding processed_transcript MGP_AJ_T0081670.1 MGP_AJ_G0031625.1 mouse_genomes_project 7 10047450 10060240 - MGP_AJ_P0081670 Zfp329 protein_coding protein_coding MGP_AJ_T0098473.1 MGP_AJ_G0036457.1 mouse_genomes_project 7 113635241 113636668 + pseudogene pseudogene MGP_AJ_T0082712.1 MGP_AJ_G0031929.1 mouse_genomes_project 7 26677200 26678526 + MGP_AJ_P0082712 Sycn protein_coding protein_coding MGP_AJ_T0085510.1 MGP_AJ_G0032592.1 mouse_genomes_project 7 102946127 102947206 - MGP_AJ_P0085510 Olfr551 protein_coding protein_coding MGP_AJ_T0005178.1 MGP_AJ_G0004408.1 mouse_genomes_project 7 27749171 27751622 - Gm29326 antisense antisense MGP_AJ_T0102772.1 MGP_AJ_G0040513.1 mouse_genomes_project 7 10619533 10646473 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0008978.1 MGP_AJ_G0007236.1 mouse_genomes_project 7 94574784 94577373 - Gm44601 lincRNA lincRNA MGP_AJ_T0085240.1 MGP_AJ_G0032535.1 mouse_genomes_project 7 100286044 100314402 + MGP_AJ_P0085240 Chrdl2 protein_coding protein_coding MGP_AJ_T0085241.1 MGP_AJ_G0032535.1 mouse_genomes_project 7 100289553 100314404 + MGP_AJ_P0085241 Chrdl2 protein_coding protein_coding MGP_AJ_T0085242.1 MGP_AJ_G0032535.1 mouse_genomes_project 7 100301700 100314402 + MGP_AJ_P0085242 Chrdl2 protein_coding protein_coding MGP_AJ_T0085498.1 MGP_AJ_G0032582.1 mouse_genomes_project 7 102594538 102605523 - MGP_AJ_P0085498 Rhog protein_coding protein_coding MGP_AJ_T0085499.1 MGP_AJ_G0032582.1 mouse_genomes_project 7 102594538 102605488 - MGP_AJ_P0085499 Rhog protein_coding protein_coding MGP_AJ_T0009062.1 MGP_AJ_G0007290.1 mouse_genomes_project 7 136566410 136582686 - 5830432E09Rik lincRNA lincRNA MGP_AJ_T0009063.1 MGP_AJ_G0007290.1 mouse_genomes_project 7 136578859 136582717 - 5830432E09Rik lincRNA lincRNA MGP_AJ_T0081645.1 MGP_AJ_G0031609.1 mouse_genomes_project 7 9139563 9140538 - MGP_AJ_P0081645 Vmn1r76 protein_coding protein_coding MGP_AJ_T0083485.1 MGP_AJ_G0032100.1 mouse_genomes_project 7 42001352 42002147 - Gm15013 protein_coding translated_processed_pseudogene MGP_AJ_T0083486.1 MGP_AJ_G0032100.1 mouse_genomes_project 7 42001352 42002147 - MGP_AJ_P0083486 Gm15013 protein_coding protein_coding MGP_AJ_T0008875.1 MGP_AJ_G0007164.1 mouse_genomes_project 7 42688270 42688628 + Gm44818 lincRNA lincRNA MGP_AJ_T0010880.1 MGP_AJ_G0009002.1 mouse_genomes_project 7 61606300 61606398 - Gm23917 miRNA miRNA MGP_AJ_T0084913.1 MGP_AJ_G0032433.1 mouse_genomes_project 7 84022329 84176996 - MGP_AJ_P0084913 Cemip protein_coding protein_coding MGP_AJ_T0084914.1 MGP_AJ_G0032433.1 mouse_genomes_project 7 84024887 84034459 - Cemip protein_coding retained_intron MGP_AJ_T0084915.1 MGP_AJ_G0032433.1 mouse_genomes_project 7 84036646 84177188 - Cemip protein_coding retained_intron MGP_AJ_T0084916.1 MGP_AJ_G0032433.1 mouse_genomes_project 7 84040559 84066901 - Cemip protein_coding retained_intron MGP_AJ_T0084917.1 MGP_AJ_G0032433.1 mouse_genomes_project 7 84050815 84177188 - Cemip protein_coding retained_intron MGP_AJ_T0085999.1 MGP_AJ_G0032848.1 mouse_genomes_project 7 112148991 112458156 - MGP_AJ_P0085999 Galnt18 protein_coding protein_coding MGP_AJ_T0086000.1 MGP_AJ_G0032848.1 mouse_genomes_project 7 112148991 112458156 - MGP_AJ_P0086000 Galnt18 protein_coding protein_coding MGP_AJ_T0015942.1 MGP_AJ_G0014037.1 mouse_genomes_project 7 128995435 128996335 + processed_pseudogene processed_pseudogene MGP_AJ_T0005156.1 MGP_AJ_G0004390.1 mouse_genomes_project 7 16901509 16902757 + 1700058P15Rik antisense antisense MGP_AJ_T0085805.1 MGP_AJ_G0032764.1 mouse_genomes_project 7 107571155 107575394 - MGP_AJ_P0085805 Olfr710 protein_coding protein_coding MGP_AJ_T0101864.1 MGP_AJ_G0039747.1 mouse_genomes_project 7 38156025 38156364 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0101865.1 MGP_AJ_G0039747.1 mouse_genomes_project 7 38156298 38159476 - transcribed_processed_pseudogene processed_transcript MGP_AJ_T0015951.1 MGP_AJ_G0014046.1 mouse_genomes_project 7 140730935 140731407 + processed_pseudogene processed_pseudogene MGP_AJ_T0015706.1 MGP_AJ_G0013801.1 mouse_genomes_project 7 9837299 9838746 + processed_pseudogene processed_pseudogene MGP_AJ_T0015690.1 MGP_AJ_G0013785.1 mouse_genomes_project 7 1089726 1089880 + processed_pseudogene processed_pseudogene MGP_AJ_T0084111.1 MGP_AJ_G0032269.1 mouse_genomes_project 7 48350242 48362458 - MGP_AJ_P0084111 Mrgprb1 protein_coding protein_coding MGP_AJ_T0084112.1 MGP_AJ_G0032269.1 mouse_genomes_project 7 48353029 48362411 - MGP_AJ_P0084112 Mrgprb1 protein_coding protein_coding MGP_AJ_T0084113.1 MGP_AJ_G0032269.1 mouse_genomes_project 7 48353259 48362362 - MGP_AJ_P0084113 Mrgprb1 protein_coding protein_coding MGP_AJ_T0081637.1 MGP_AJ_G0031603.1 mouse_genomes_project 7 7797369 7837899 + MGP_AJ_P0081637 Nlrp4b protein_coding protein_coding MGP_AJ_T0081638.1 MGP_AJ_G0031603.1 mouse_genomes_project 7 7797397 7837909 + MGP_AJ_P0081638 Nlrp4b protein_coding protein_coding MGP_AJ_T0081639.1 MGP_AJ_G0031603.1 mouse_genomes_project 7 7821053 7834134 + MGP_AJ_P0081639 Nlrp4b protein_coding protein_coding MGP_AJ_T0015899.1 MGP_AJ_G0013994.1 mouse_genomes_project 7 100865394 100865747 + processed_pseudogene processed_pseudogene MGP_AJ_T0082989.1 MGP_AJ_G0031994.1 mouse_genomes_project 7 28617697 28621494 + MGP_AJ_P0082989 Tyrobp protein_coding protein_coding MGP_AJ_T0102753.1 MGP_AJ_G0040494.1 mouse_genomes_project 7 8984185 8984363 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0083666.1 MGP_AJ_G0032146.1 mouse_genomes_project 7 43883169 43889249 - MGP_AJ_P0083666 Spib protein_coding protein_coding MGP_AJ_T0083667.1 MGP_AJ_G0032146.1 mouse_genomes_project 7 43885141 43888454 - MGP_AJ_P0083667 Spib protein_coding protein_coding MGP_AJ_T0083668.1 MGP_AJ_G0032146.1 mouse_genomes_project 7 43885141 43889231 - MGP_AJ_P0083668 Spib protein_coding protein_coding MGP_AJ_T0084881.1 MGP_AJ_G0032423.1 mouse_genomes_project 7 82738538 82764722 + MGP_AJ_P0084881 Efl1 protein_coding protein_coding MGP_AJ_T0084882.1 MGP_AJ_G0032423.1 mouse_genomes_project 7 82738538 82868853 + MGP_AJ_P0084882 Efl1 protein_coding protein_coding MGP_AJ_T0084883.1 MGP_AJ_G0032423.1 mouse_genomes_project 7 82738553 82788849 + Efl1 protein_coding retained_intron MGP_AJ_T0084884.1 MGP_AJ_G0032423.1 mouse_genomes_project 7 82738565 82868853 + MGP_AJ_P0084884 Efl1 protein_coding protein_coding MGP_AJ_T0084885.1 MGP_AJ_G0032423.1 mouse_genomes_project 7 82760395 82764711 + Efl1 protein_coding processed_transcript MGP_AJ_T0087942.1 MGP_AJ_G0033263.1 mouse_genomes_project 7 144685079 144690879 - Osbpl5 protein_coding retained_intron MGP_AJ_T0087943.1 MGP_AJ_G0033263.1 mouse_genomes_project 7 144685079 144736518 - MGP_AJ_P0087943 Osbpl5 protein_coding protein_coding MGP_AJ_T0087944.1 MGP_AJ_G0033263.1 mouse_genomes_project 7 144685079 144738140 - MGP_AJ_P0087944 Osbpl5 protein_coding protein_coding MGP_AJ_T0087945.1 MGP_AJ_G0033263.1 mouse_genomes_project 7 144690581 144691405 - Osbpl5 protein_coding retained_intron MGP_AJ_T0087946.1 MGP_AJ_G0033263.1 mouse_genomes_project 7 144699229 144701296 - Osbpl5 protein_coding retained_intron MGP_AJ_T0087947.1 MGP_AJ_G0033263.1 mouse_genomes_project 7 144705227 144753789 - MGP_AJ_P0087947 Osbpl5 protein_coding protein_coding MGP_AJ_T0087948.1 MGP_AJ_G0033263.1 mouse_genomes_project 7 144709672 144736476 - Osbpl5 protein_coding processed_transcript MGP_AJ_T0084095.1 MGP_AJ_G0032257.1 mouse_genomes_project 7 46410805 46415021 + protein_coding processed_transcript MGP_AJ_T0084096.1 MGP_AJ_G0032257.1 mouse_genomes_project 7 46410886 46415029 + protein_coding processed_transcript MGP_AJ_T0084097.1 MGP_AJ_G0032257.1 mouse_genomes_project 7 46414045 46415022 + MGP_AJ_P0084097 protein_coding protein_coding MGP_AJ_T0002316.1 MGP_AJ_G0002227.1 mouse_genomes_project 7 129403979 129404589 + TEC TEC MGP_AJ_T0010895.1 MGP_AJ_G0009017.1 mouse_genomes_project 7 66219396 66219454 - Mir7057 miRNA miRNA MGP_AJ_T0085818.1 MGP_AJ_G0032776.1 mouse_genomes_project 7 107949070 108014701 + MGP_AJ_P0085818 Syt9 protein_coding protein_coding MGP_AJ_T0085819.1 MGP_AJ_G0032776.1 mouse_genomes_project 7 107949132 108127163 + MGP_AJ_P0085819 Syt9 protein_coding protein_coding MGP_AJ_T0085820.1 MGP_AJ_G0032776.1 mouse_genomes_project 7 107949132 108127160 + MGP_AJ_P0085820 Syt9 protein_coding nonsense_mediated_decay MGP_AJ_T0085821.1 MGP_AJ_G0032776.1 mouse_genomes_project 7 108080075 108127160 + Syt9 protein_coding retained_intron MGP_AJ_T0085822.1 MGP_AJ_G0032776.1 mouse_genomes_project 7 108080109 108127160 + Syt9 protein_coding retained_intron MGP_AJ_T0085671.1 MGP_AJ_G0032719.1 mouse_genomes_project 7 105536071 105537213 - MGP_AJ_P0085671 Olfr683 protein_coding protein_coding MGP_AJ_T0082667.1 MGP_AJ_G0031917.1 mouse_genomes_project 7 26426740 26433294 - MGP_AJ_P0082667 Timm50 protein_coding protein_coding MGP_AJ_T0082668.1 MGP_AJ_G0031917.1 mouse_genomes_project 7 26427046 26427887 - Timm50 protein_coding retained_intron MGP_AJ_T0082669.1 MGP_AJ_G0031917.1 mouse_genomes_project 7 26427650 26429241 - Timm50 protein_coding retained_intron MGP_AJ_T0082670.1 MGP_AJ_G0031917.1 mouse_genomes_project 7 26430728 26433259 - Timm50 protein_coding retained_intron MGP_AJ_T0082671.1 MGP_AJ_G0031917.1 mouse_genomes_project 7 26431438 26433278 - Timm50 protein_coding retained_intron MGP_AJ_T0082672.1 MGP_AJ_G0031917.1 mouse_genomes_project 7 26432135 26433161 - Timm50 protein_coding processed_transcript MGP_AJ_T0082198.1 MGP_AJ_G0031797.1 mouse_genomes_project 7 21931981 21938855 + MGP_AJ_P0082198 Zfp114 protein_coding protein_coding MGP_AJ_T0082199.1 MGP_AJ_G0031797.1 mouse_genomes_project 7 21932007 21940039 + MGP_AJ_P0082199 Zfp114 protein_coding protein_coding MGP_AJ_T0082200.1 MGP_AJ_G0031797.1 mouse_genomes_project 7 21934284 21940904 + MGP_AJ_P0082200 Zfp114 protein_coding protein_coding MGP_AJ_T0082348.1 MGP_AJ_G0031834.1 mouse_genomes_project 7 23043530 23065975 - Dedd2 protein_coding processed_transcript MGP_AJ_T0082349.1 MGP_AJ_G0031834.1 mouse_genomes_project 7 23046455 23065975 - MGP_AJ_P0082349 Dedd2 protein_coding protein_coding MGP_AJ_T0082350.1 MGP_AJ_G0031834.1 mouse_genomes_project 7 23046456 23066731 - MGP_AJ_P0082350 Dedd2 protein_coding protein_coding MGP_AJ_T0082351.1 MGP_AJ_G0031834.1 mouse_genomes_project 7 23063260 23065987 - Dedd2 protein_coding retained_intron MGP_AJ_T0008876.1 MGP_AJ_G0007165.1 mouse_genomes_project 7 42799226 42799700 - Gm44819 lincRNA lincRNA MGP_AJ_T0011702.1 MGP_AJ_G0009824.1 mouse_genomes_project 7 144255233 144255428 + Gm27389 misc_RNA misc_RNA MGP_AJ_T0082502.1 MGP_AJ_G0031875.1 mouse_genomes_project 7 25159763 25165086 + MGP_AJ_P0082502 Cyp2t4 protein_coding protein_coding MGP_AJ_T0082503.1 MGP_AJ_G0031875.1 mouse_genomes_project 7 25161716 25165190 + MGP_AJ_P0082503 Cyp2t4 protein_coding protein_coding MGP_AJ_T0083960.1 MGP_AJ_G0032223.1 mouse_genomes_project 7 45117188 45125447 + MGP_AJ_P0083960 Fam83e protein_coding protein_coding MGP_AJ_T0083961.1 MGP_AJ_G0032223.1 mouse_genomes_project 7 45117196 45120836 + Fam83e protein_coding retained_intron MGP_AJ_T0083963.1 MGP_AJ_G0032223.1 mouse_genomes_project 7 45121836 45125444 + Fam83e protein_coding processed_transcript MGP_AJ_T0087688.1 MGP_AJ_G0033212.1 mouse_genomes_project 7 142432021 142437901 - Pidd1 protein_coding retained_intron MGP_AJ_T0087689.1 MGP_AJ_G0033212.1 mouse_genomes_project 7 142432021 142437934 - MGP_AJ_P0087689 Pidd1 protein_coding protein_coding MGP_AJ_T0087690.1 MGP_AJ_G0033212.1 mouse_genomes_project 7 142432021 142437265 - MGP_AJ_P0087690 Pidd1 protein_coding nonsense_mediated_decay MGP_AJ_T0087691.1 MGP_AJ_G0033212.1 mouse_genomes_project 7 142432021 142437262 - MGP_AJ_P0087691 Pidd1 protein_coding nonsense_mediated_decay MGP_AJ_T0087692.1 MGP_AJ_G0033212.1 mouse_genomes_project 7 142432025 142437917 - Pidd1 protein_coding retained_intron MGP_AJ_T0087693.1 MGP_AJ_G0033212.1 mouse_genomes_project 7 142432033 142437265 - Pidd1 protein_coding retained_intron MGP_AJ_T0087694.1 MGP_AJ_G0033212.1 mouse_genomes_project 7 142432423 142437264 - MGP_AJ_P0087694 Pidd1 protein_coding protein_coding MGP_AJ_T0087695.1 MGP_AJ_G0033212.1 mouse_genomes_project 7 142432433 142437229 - MGP_AJ_P0087695 Pidd1 protein_coding nonsense_mediated_decay MGP_AJ_T0087696.1 MGP_AJ_G0033212.1 mouse_genomes_project 7 142432438 142437229 - Pidd1 protein_coding retained_intron MGP_AJ_T0087697.1 MGP_AJ_G0033212.1 mouse_genomes_project 7 142433407 142434033 - Pidd1 protein_coding retained_intron MGP_AJ_T0087698.1 MGP_AJ_G0033212.1 mouse_genomes_project 7 142434958 142436198 - Pidd1 protein_coding retained_intron MGP_AJ_T0087699.1 MGP_AJ_G0033212.1 mouse_genomes_project 7 142436074 142437903 - Pidd1 protein_coding processed_transcript MGP_AJ_T0081525.1 MGP_AJ_G0031545.1 mouse_genomes_project 7 1916353 1924456 - MGP_AJ_P0081525 Sbk2 protein_coding protein_coding MGP_AJ_T0081526.1 MGP_AJ_G0031545.1 mouse_genomes_project 7 1917297 1924459 - MGP_AJ_P0081526 Sbk2 protein_coding protein_coding MGP_AJ_T0081527.1 MGP_AJ_G0031545.1 mouse_genomes_project 7 1917738 1924465 - MGP_AJ_P0081527 Sbk2 protein_coding protein_coding MGP_AJ_T0081528.1 MGP_AJ_G0031545.1 mouse_genomes_project 7 1921195 1924501 - Sbk2 protein_coding processed_transcript MGP_AJ_T0008928.1 MGP_AJ_G0007207.1 mouse_genomes_project 7 73509595 73517070 + Gm44737 lincRNA lincRNA MGP_AJ_T0085859.1 MGP_AJ_G0032811.1 mouse_genomes_project 7 109302279 109303224 + MGP_AJ_P0085859 Olfr510 protein_coding protein_coding MGP_AJ_T0087614.1 MGP_AJ_G0033201.1 mouse_genomes_project 7 142254327 142258043 - MGP_AJ_P0087614 Irf7 protein_coding protein_coding MGP_AJ_T0087615.1 MGP_AJ_G0033201.1 mouse_genomes_project 7 142254804 142258103 - MGP_AJ_P0087615 Irf7 protein_coding protein_coding MGP_AJ_T0087616.1 MGP_AJ_G0033201.1 mouse_genomes_project 7 142254805 142258045 - MGP_AJ_P0087616 Irf7 protein_coding protein_coding MGP_AJ_T0087617.1 MGP_AJ_G0033201.1 mouse_genomes_project 7 142254808 142258044 - Irf7 protein_coding retained_intron MGP_AJ_T0087618.1 MGP_AJ_G0033201.1 mouse_genomes_project 7 142255053 142256914 - MGP_AJ_P0087618 Irf7 protein_coding protein_coding MGP_AJ_T0087619.1 MGP_AJ_G0033201.1 mouse_genomes_project 7 142255412 142256753 - Irf7 protein_coding retained_intron MGP_AJ_T0087620.1 MGP_AJ_G0033201.1 mouse_genomes_project 7 142255594 142257666 - Irf7 protein_coding processed_transcript MGP_AJ_T0087621.1 MGP_AJ_G0033201.1 mouse_genomes_project 7 142255844 142257095 - Irf7 protein_coding retained_intron MGP_AJ_T0087622.1 MGP_AJ_G0033201.1 mouse_genomes_project 7 142256421 142257329 - Irf7 protein_coding retained_intron MGP_AJ_T0087623.1 MGP_AJ_G0033201.1 mouse_genomes_project 7 142256836 142257606 - Irf7 protein_coding retained_intron MGP_AJ_T0087624.1 MGP_AJ_G0033201.1 mouse_genomes_project 7 142256997 142258043 - Irf7 protein_coding processed_transcript MGP_AJ_T0084314.1 MGP_AJ_G0032315.1 mouse_genomes_project 7 64217075 64244367 - MGP_AJ_P0084314 Fan1 protein_coding protein_coding MGP_AJ_T0084315.1 MGP_AJ_G0032315.1 mouse_genomes_project 7 64231778 64243660 - Fan1 protein_coding retained_intron MGP_AJ_T0084316.1 MGP_AJ_G0032315.1 mouse_genomes_project 7 64240439 64244382 - Fan1 protein_coding retained_intron MGP_AJ_T0084317.1 MGP_AJ_G0032315.1 mouse_genomes_project 7 64241198 64244328 - Fan1 protein_coding retained_intron MGP_AJ_T0087892.1 MGP_AJ_G0033251.1 mouse_genomes_project 7 144034852 144050049 + MGP_AJ_P0087892 Cd81 protein_coding protein_coding MGP_AJ_T0087893.1 MGP_AJ_G0033251.1 mouse_genomes_project 7 144034907 144047728 + Cd81 protein_coding retained_intron MGP_AJ_T0087894.1 MGP_AJ_G0033251.1 mouse_genomes_project 7 144040689 144049277 + Cd81 protein_coding processed_transcript MGP_AJ_T0087895.1 MGP_AJ_G0033251.1 mouse_genomes_project 7 144048315 144049720 + Cd81 protein_coding retained_intron MGP_AJ_T0084638.1 MGP_AJ_G0032375.1 mouse_genomes_project 7 79810868 79812416 - MGP_AJ_P0084638 Mesp1 protein_coding protein_coding MGP_AJ_T0010855.1 MGP_AJ_G0008977.1 mouse_genomes_project 7 28757768 28757845 + Gm38670 miRNA miRNA MGP_AJ_T0081269.1 MGP_AJ_G0031495.1 mouse_genomes_project 7 395663 412161 - MGP_AJ_P0081269 Tarm1 protein_coding protein_coding MGP_AJ_T0081270.1 MGP_AJ_G0031495.1 mouse_genomes_project 7 397669 412227 - MGP_AJ_P0081270 Tarm1 protein_coding protein_coding MGP_AJ_T0081271.1 MGP_AJ_G0031495.1 mouse_genomes_project 7 398863 412121 - MGP_AJ_P0081271 Tarm1 protein_coding protein_coding MGP_AJ_T0009009.1 MGP_AJ_G0007254.1 mouse_genomes_project 7 117271154 117273646 + 4732496C06Rik lincRNA lincRNA MGP_AJ_T0087780.1 MGP_AJ_G0033232.1 mouse_genomes_project 7 143234199 143241956 - MGP_AJ_P0087780 Gm4559 protein_coding protein_coding MGP_AJ_T0102814.1 MGP_AJ_G0040554.1 mouse_genomes_project 7 32426178 32429261 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0082273.1 MGP_AJ_G0031819.1 mouse_genomes_project 7 22526598 22532187 + MGP_AJ_P0082273 BC049730 protein_coding protein_coding MGP_AJ_T0082274.1 MGP_AJ_G0031819.1 mouse_genomes_project 7 22526615 22533199 + MGP_AJ_P0082274 BC049730 protein_coding protein_coding MGP_AJ_T0084776.1 MGP_AJ_G0032398.1 mouse_genomes_project 7 80921494 80935744 + MGP_AJ_P0084776 Zscan2 protein_coding protein_coding MGP_AJ_T0084777.1 MGP_AJ_G0032398.1 mouse_genomes_project 7 80921525 80924255 + MGP_AJ_P0084777 Zscan2 protein_coding protein_coding MGP_AJ_T0084778.1 MGP_AJ_G0032398.1 mouse_genomes_project 7 80921527 80936663 + MGP_AJ_P0084778 Zscan2 protein_coding protein_coding MGP_AJ_T0084779.1 MGP_AJ_G0032398.1 mouse_genomes_project 7 80922682 80937312 + MGP_AJ_P0084779 Zscan2 protein_coding protein_coding MGP_AJ_T0084780.1 MGP_AJ_G0032398.1 mouse_genomes_project 7 80923702 80935873 + MGP_AJ_P0084780 Zscan2 protein_coding protein_coding MGP_AJ_T0085263.1 MGP_AJ_G0032541.1 mouse_genomes_project 7 100608051 100653909 - MGP_AJ_P0085263 Ppme1 protein_coding protein_coding MGP_AJ_T0015901.1 MGP_AJ_G0013996.1 mouse_genomes_project 7 101533804 101534742 + processed_pseudogene processed_pseudogene MGP_AJ_T0002241.1 MGP_AJ_G0002153.1 mouse_genomes_project 7 64072176 64072612 - TEC TEC MGP_AJ_T0085048.1 MGP_AJ_G0032488.1 mouse_genomes_project 7 92926274 93015770 + MGP_AJ_P0085048 Rab30 protein_coding protein_coding MGP_AJ_T0085049.1 MGP_AJ_G0032488.1 mouse_genomes_project 7 92998798 93015300 + MGP_AJ_P0085049 Rab30 protein_coding protein_coding MGP_AJ_T0085050.1 MGP_AJ_G0032488.1 mouse_genomes_project 7 92998813 93015297 + MGP_AJ_P0085050 Rab30 protein_coding protein_coding MGP_AJ_T0082468.1 MGP_AJ_G0031860.1 mouse_genomes_project 7 23784090 23813260 + MGP_AJ_P0082468 Cyp2b10 protein_coding protein_coding MGP_AJ_T0082469.1 MGP_AJ_G0031860.1 mouse_genomes_project 7 23784146 23813195 + MGP_AJ_P0082469 Cyp2b10 protein_coding protein_coding MGP_AJ_T0082470.1 MGP_AJ_G0031860.1 mouse_genomes_project 7 23802993 23803658 + Cyp2b10 protein_coding retained_intron MGP_AJ_T0085838.1 MGP_AJ_G0032790.1 mouse_genomes_project 7 108657933 108658962 - MGP_AJ_P0085838 Olfr480 protein_coding protein_coding MGP_AJ_T0082438.1 MGP_AJ_G0031855.1 mouse_genomes_project 7 23562062 23580216 + MGP_AJ_P0082438 Tgfb1 protein_coding protein_coding MGP_AJ_T0082439.1 MGP_AJ_G0031855.1 mouse_genomes_project 7 23563208 23563785 + Tgfb1 protein_coding processed_transcript MGP_AJ_T0082440.1 MGP_AJ_G0031855.1 mouse_genomes_project 7 23563950 23566523 + Tgfb1 protein_coding retained_intron MGP_AJ_T0082441.1 MGP_AJ_G0031855.1 mouse_genomes_project 7 23563987 23572354 + MGP_AJ_P0082441 Tgfb1 protein_coding nonsense_mediated_decay MGP_AJ_T0082442.1 MGP_AJ_G0031855.1 mouse_genomes_project 7 23567558 23572315 + Tgfb1 protein_coding retained_intron MGP_AJ_T0084271.1 MGP_AJ_G0032305.1 mouse_genomes_project 7 62223571 62225223 + MGP_AJ_P0084271 Ndn protein_coding protein_coding MGP_AJ_T0084939.1 MGP_AJ_G0032449.1 mouse_genomes_project 7 86564676 86565678 - MGP_AJ_P0084939 Olfr304 protein_coding protein_coding MGP_AJ_T0087951.1 MGP_AJ_G0033266.1 mouse_genomes_project 7 144792367 144819619 - MGP_AJ_P0087951 Nadsyn1 protein_coding protein_coding MGP_AJ_T0087952.1 MGP_AJ_G0033266.1 mouse_genomes_project 7 144792633 144819565 - MGP_AJ_P0087952 Nadsyn1 protein_coding nonsense_mediated_decay MGP_AJ_T0087953.1 MGP_AJ_G0033266.1 mouse_genomes_project 7 144792652 144819620 - MGP_AJ_P0087953 Nadsyn1 protein_coding nonsense_mediated_decay MGP_AJ_T0087954.1 MGP_AJ_G0033266.1 mouse_genomes_project 7 144794632 144795625 - Nadsyn1 protein_coding retained_intron MGP_AJ_T0087955.1 MGP_AJ_G0033266.1 mouse_genomes_project 7 144809541 144819596 - MGP_AJ_P0087955 Nadsyn1 protein_coding nonsense_mediated_decay MGP_AJ_T0087956.1 MGP_AJ_G0033266.1 mouse_genomes_project 7 144810064 144819526 - Nadsyn1 protein_coding retained_intron MGP_AJ_T0087957.1 MGP_AJ_G0033266.1 mouse_genomes_project 7 144810202 144819583 - MGP_AJ_P0087957 Nadsyn1 protein_coding protein_coding MGP_AJ_T0087958.1 MGP_AJ_G0033266.1 mouse_genomes_project 7 144812116 144819627 - Nadsyn1 protein_coding retained_intron MGP_AJ_T0083252.1 MGP_AJ_G0032048.1 mouse_genomes_project 7 32371214 32373170 - MGP_AJ_P0083252 Scgb2b27 protein_coding protein_coding MGP_AJ_T0083253.1 MGP_AJ_G0032048.1 mouse_genomes_project 7 32371225 32373236 - Scgb2b27 protein_coding retained_intron MGP_AJ_T0083254.1 MGP_AJ_G0032048.1 mouse_genomes_project 7 32371263 32373161 - MGP_AJ_P0083254 Scgb2b27 protein_coding protein_coding MGP_AJ_T0086621.1 MGP_AJ_G0032977.1 mouse_genomes_project 7 127523279 127527727 - MGP_AJ_P0086621 Coro1a protein_coding protein_coding MGP_AJ_T0086622.1 MGP_AJ_G0032977.1 mouse_genomes_project 7 127523279 127528323 - MGP_AJ_P0086622 Coro1a protein_coding protein_coding MGP_AJ_T0086623.1 MGP_AJ_G0032977.1 mouse_genomes_project 7 127523387 127526680 - MGP_AJ_P0086623 Coro1a protein_coding protein_coding MGP_AJ_T0086624.1 MGP_AJ_G0032977.1 mouse_genomes_project 7 127523817 127524734 - Coro1a protein_coding retained_intron MGP_AJ_T0086625.1 MGP_AJ_G0032977.1 mouse_genomes_project 7 127523861 127524767 - Coro1a protein_coding retained_intron MGP_AJ_T0086626.1 MGP_AJ_G0032977.1 mouse_genomes_project 7 127524497 127525602 - Coro1a protein_coding retained_intron MGP_AJ_T0086627.1 MGP_AJ_G0032977.1 mouse_genomes_project 7 127524498 127526681 - MGP_AJ_P0086627 Coro1a protein_coding protein_coding MGP_AJ_T0086628.1 MGP_AJ_G0032977.1 mouse_genomes_project 7 127524836 127525979 - Coro1a protein_coding retained_intron MGP_AJ_T0086629.1 MGP_AJ_G0032977.1 mouse_genomes_project 7 127524853 127528261 - MGP_AJ_P0086629 Coro1a protein_coding protein_coding MGP_AJ_T0086630.1 MGP_AJ_G0032977.1 mouse_genomes_project 7 127525397 127528054 - MGP_AJ_P0086630 Coro1a protein_coding protein_coding MGP_AJ_T0086631.1 MGP_AJ_G0032977.1 mouse_genomes_project 7 127525408 127531284 - MGP_AJ_P0086631 Coro1a protein_coding protein_coding MGP_AJ_T0086632.1 MGP_AJ_G0032977.1 mouse_genomes_project 7 127526338 127528260 - Coro1a protein_coding retained_intron MGP_AJ_T0087784.1 MGP_AJ_G0033236.1 mouse_genomes_project 7 143315732 143328218 - Ifitm10 protein_coding processed_transcript MGP_AJ_T0087785.1 MGP_AJ_G0033236.1 mouse_genomes_project 7 143316005 143363342 - MGP_AJ_P0087785 Ifitm10 protein_coding protein_coding MGP_AJ_T0087786.1 MGP_AJ_G0033236.1 mouse_genomes_project 7 143316025 143363170 - Ifitm10 protein_coding processed_transcript MGP_AJ_T0087787.1 MGP_AJ_G0033236.1 mouse_genomes_project 7 143346433 143363160 - MGP_AJ_P0087787 Ifitm10 protein_coding protein_coding MGP_AJ_T0087788.1 MGP_AJ_G0033236.1 mouse_genomes_project 7 143346847 143364649 - MGP_AJ_P0087788 Ifitm10 protein_coding protein_coding MGP_AJ_T0087789.1 MGP_AJ_G0033236.1 mouse_genomes_project 7 143362043 143363782 - Ifitm10 protein_coding processed_transcript MGP_AJ_T0002235.1 MGP_AJ_G0002147.1 mouse_genomes_project 7 55927869 55929196 - TEC TEC MGP_AJ_T0082205.1 MGP_AJ_G0031801.1 mouse_genomes_project 7 22071465 22081285 - MGP_AJ_P0082205 Zfp61 protein_coding protein_coding MGP_AJ_T0082206.1 MGP_AJ_G0031801.1 mouse_genomes_project 7 22071483 22076408 - MGP_AJ_P0082206 Zfp61 protein_coding protein_coding MGP_AJ_T0082207.1 MGP_AJ_G0031801.1 mouse_genomes_project 7 22072445 22076138 - Zfp61 protein_coding processed_transcript MGP_AJ_T0082208.1 MGP_AJ_G0031801.1 mouse_genomes_project 7 22072588 22080920 - MGP_AJ_P0082208 Zfp61 protein_coding protein_coding MGP_AJ_T0082209.1 MGP_AJ_G0031801.1 mouse_genomes_project 7 22073787 22075975 - Zfp61 protein_coding retained_intron MGP_AJ_T0082210.1 MGP_AJ_G0031801.1 mouse_genomes_project 7 22075497 22080908 - Zfp61 protein_coding processed_transcript MGP_AJ_T0082211.1 MGP_AJ_G0031801.1 mouse_genomes_project 7 22075740 22081011 - Zfp61 protein_coding retained_intron MGP_AJ_T0082212.1 MGP_AJ_G0031801.1 mouse_genomes_project 7 22078013 22082844 - Zfp61 protein_coding processed_transcript MGP_AJ_T0082213.1 MGP_AJ_G0031801.1 mouse_genomes_project 7 22078480 22081247 - Zfp61 protein_coding retained_intron MGP_AJ_T0083881.1 MGP_AJ_G0032203.1 mouse_genomes_project 7 44849915 44855117 - MGP_AJ_P0083881 Bax protein_coding protein_coding MGP_AJ_T0081624.1 MGP_AJ_G0031592.1 mouse_genomes_project 7 4106324 4114944 - MGP_AJ_P0081624 Zfp773 protein_coding protein_coding MGP_AJ_T0015772.1 MGP_AJ_G0013867.1 mouse_genomes_project 7 30835187 30836179 + processed_pseudogene processed_pseudogene MGP_AJ_T0002323.1 MGP_AJ_G0002234.1 mouse_genomes_project 7 144333156 144336646 - TEC TEC MGP_AJ_T0081771.1 MGP_AJ_G0031657.1 mouse_genomes_project 7 11660697 11691239 - MGP_AJ_P0081771 Sult2a8 protein_coding protein_coding MGP_AJ_T0081772.1 MGP_AJ_G0031657.1 mouse_genomes_project 7 11660700 11698809 - MGP_AJ_P0081772 Sult2a8 protein_coding protein_coding MGP_AJ_T0081773.1 MGP_AJ_G0031657.1 mouse_genomes_project 7 11666195 11698992 - MGP_AJ_P0081773 Sult2a8 protein_coding protein_coding MGP_AJ_T0010881.1 MGP_AJ_G0009003.1 mouse_genomes_project 7 61608152 61608218 - Mir344e miRNA miRNA MGP_AJ_T0005208.1 MGP_AJ_G0004430.1 mouse_genomes_project 7 43714645 43715370 + Gm44780 antisense antisense MGP_AJ_T0086990.1 MGP_AJ_G0033043.1 mouse_genomes_project 7 128730008 128736362 - MGP_AJ_P0086990 Prss53 protein_coding protein_coding MGP_AJ_T0086991.1 MGP_AJ_G0033043.1 mouse_genomes_project 7 128730260 128736359 - MGP_AJ_P0086991 Prss53 protein_coding protein_coding MGP_AJ_T0005298.1 MGP_AJ_G0004494.1 mouse_genomes_project 7 129594765 129595894 + Gm44674 antisense antisense MGP_AJ_T0082530.1 MGP_AJ_G0031882.1 mouse_genomes_project 7 25223138 25244599 - MGP_AJ_P0082530 Itpkc protein_coding protein_coding MGP_AJ_T0082531.1 MGP_AJ_G0031882.1 mouse_genomes_project 7 25223936 25229020 - Itpkc protein_coding processed_transcript MGP_AJ_T0082532.1 MGP_AJ_G0031882.1 mouse_genomes_project 7 25228532 25230422 - Itpkc protein_coding retained_intron MGP_AJ_T0082533.1 MGP_AJ_G0031882.1 mouse_genomes_project 7 25241714 25244632 - Itpkc protein_coding retained_intron MGP_AJ_T0087341.1 MGP_AJ_G0033112.1 mouse_genomes_project 7 135824100 135880645 - MGP_AJ_P0087341 Fam196a protein_coding protein_coding MGP_AJ_T0084145.1 MGP_AJ_G0032278.1 mouse_genomes_project 7 49675278 49690174 + MGP_AJ_P0084145 Htatip2 protein_coding protein_coding MGP_AJ_T0084146.1 MGP_AJ_G0032278.1 mouse_genomes_project 7 49675386 49690178 + MGP_AJ_P0084146 Htatip2 protein_coding unknown_likely_coding MGP_AJ_T0101407.1 MGP_AJ_G0039373.1 mouse_genomes_project 7 44498985 44499075 - Snord35a snoRNA snoRNA MGP_AJ_T0083669.1 MGP_AJ_G0032147.1 mouse_genomes_project 7 43889923 43905986 - MGP_AJ_P0083669 Pold1 protein_coding protein_coding MGP_AJ_T0083670.1 MGP_AJ_G0032147.1 mouse_genomes_project 7 43889926 43891096 - Pold1 protein_coding retained_intron MGP_AJ_T0083671.1 MGP_AJ_G0032147.1 mouse_genomes_project 7 43889928 43905988 - Pold1 protein_coding retained_intron MGP_AJ_T0083672.1 MGP_AJ_G0032147.1 mouse_genomes_project 7 43889931 43892269 - Pold1 protein_coding retained_intron MGP_AJ_T0083673.1 MGP_AJ_G0032147.1 mouse_genomes_project 7 43889963 43905977 - MGP_AJ_P0083673 Pold1 protein_coding nonsense_mediated_decay MGP_AJ_T0083674.1 MGP_AJ_G0032147.1 mouse_genomes_project 7 43890457 43891367 - Pold1 protein_coding retained_intron MGP_AJ_T0083675.1 MGP_AJ_G0032147.1 mouse_genomes_project 7 43891073 43893136 - Pold1 protein_coding retained_intron MGP_AJ_T0083676.1 MGP_AJ_G0032147.1 mouse_genomes_project 7 43894696 43895596 - Pold1 protein_coding retained_intron MGP_AJ_T0083677.1 MGP_AJ_G0032147.1 mouse_genomes_project 7 43899279 43905872 - MGP_AJ_P0083677 Pold1 protein_coding protein_coding MGP_AJ_T0087299.1 MGP_AJ_G0033105.1 mouse_genomes_project 7 134606624 134628490 - Uros protein_coding retained_intron MGP_AJ_T0087300.1 MGP_AJ_G0033105.1 mouse_genomes_project 7 134606737 134628354 - MGP_AJ_P0087300 Uros protein_coding protein_coding MGP_AJ_T0087301.1 MGP_AJ_G0033105.1 mouse_genomes_project 7 134606737 134628465 - MGP_AJ_P0087301 Uros protein_coding protein_coding MGP_AJ_T0087302.1 MGP_AJ_G0033105.1 mouse_genomes_project 7 134606746 134628677 - MGP_AJ_P0087302 Uros protein_coding protein_coding MGP_AJ_T0087303.1 MGP_AJ_G0033105.1 mouse_genomes_project 7 134607342 134617438 - Uros protein_coding processed_transcript MGP_AJ_T0087304.1 MGP_AJ_G0033105.1 mouse_genomes_project 7 134612515 134628455 - MGP_AJ_P0087304 Uros protein_coding protein_coding MGP_AJ_T0087305.1 MGP_AJ_G0033105.1 mouse_genomes_project 7 134621242 134622020 - MGP_AJ_P0087305 Uros protein_coding protein_coding MGP_AJ_T0087306.1 MGP_AJ_G0033105.1 mouse_genomes_project 7 134621296 134628453 - MGP_AJ_P0087306 Uros protein_coding protein_coding MGP_AJ_T0087307.1 MGP_AJ_G0033105.1 mouse_genomes_project 7 134621298 134629468 - MGP_AJ_P0087307 Uros protein_coding protein_coding MGP_AJ_T0086848.1 MGP_AJ_G0033018.1 mouse_genomes_project 7 128222082 128228687 - MGP_AJ_P0086848 protein_coding protein_coding MGP_AJ_T0008842.1 MGP_AJ_G0007140.1 mouse_genomes_project 7 33101052 33109502 - Gm12756 lincRNA lincRNA MGP_AJ_T0081828.1 MGP_AJ_G0031675.1 mouse_genomes_project 7 13697885 13707423 - MGP_AJ_P0081828 C5ar2 protein_coding protein_coding MGP_AJ_T0081829.1 MGP_AJ_G0031675.1 mouse_genomes_project 7 13697885 13709861 - MGP_AJ_P0081829 C5ar2 protein_coding protein_coding MGP_AJ_T0085844.1 MGP_AJ_G0032796.1 mouse_genomes_project 7 108876781 108877726 - MGP_AJ_P0085844 Olfr488 protein_coding protein_coding MGP_AJ_T0008815.1 MGP_AJ_G0007116.1 mouse_genomes_project 7 14091773 14092955 - Gm29442 lincRNA lincRNA MGP_AJ_T0005191.1 MGP_AJ_G0004419.1 mouse_genomes_project 7 32671098 32676936 + Gm12758 antisense antisense MGP_AJ_T0005192.1 MGP_AJ_G0004419.1 mouse_genomes_project 7 32671162 32672279 + Gm12758 antisense antisense MGP_AJ_T0086458.1 MGP_AJ_G0032951.1 mouse_genomes_project 7 126364852 126392197 + MGP_AJ_P0086458 Il4ra protein_coding protein_coding MGP_AJ_T0086459.1 MGP_AJ_G0032951.1 mouse_genomes_project 7 126365003 126385003 + Il4ra protein_coding retained_intron MGP_AJ_T0086460.1 MGP_AJ_G0032951.1 mouse_genomes_project 7 126365003 126379954 + MGP_AJ_P0086460 Il4ra protein_coding protein_coding MGP_AJ_T0086461.1 MGP_AJ_G0032951.1 mouse_genomes_project 7 126365008 126382720 + MGP_AJ_P0086461 Il4ra protein_coding protein_coding MGP_AJ_T0086462.1 MGP_AJ_G0032951.1 mouse_genomes_project 7 126365019 126390690 + MGP_AJ_P0086462 Il4ra protein_coding nonsense_mediated_decay MGP_AJ_T0015773.1 MGP_AJ_G0013868.1 mouse_genomes_project 7 30835188 30836171 + processed_pseudogene processed_pseudogene MGP_AJ_T0082541.1 MGP_AJ_G0031884.1 mouse_genomes_project 7 25276526 25284902 + Numbl protein_coding processed_transcript MGP_AJ_T0082542.1 MGP_AJ_G0031884.1 mouse_genomes_project 7 25276818 25303434 + MGP_AJ_P0082542 Numbl protein_coding protein_coding MGP_AJ_T0082543.1 MGP_AJ_G0031884.1 mouse_genomes_project 7 25276876 25283051 + Numbl protein_coding processed_transcript MGP_AJ_T0082544.1 MGP_AJ_G0031884.1 mouse_genomes_project 7 25276899 25303437 + Numbl protein_coding retained_intron MGP_AJ_T0082545.1 MGP_AJ_G0031884.1 mouse_genomes_project 7 25279479 25303274 + Numbl protein_coding retained_intron MGP_AJ_T0084723.1 MGP_AJ_G0032392.1 mouse_genomes_project 7 80392273 80406720 - Man2a2 protein_coding retained_intron MGP_AJ_T0084724.1 MGP_AJ_G0032392.1 mouse_genomes_project 7 80392273 80414623 - MGP_AJ_P0084724 Man2a2 protein_coding protein_coding MGP_AJ_T0084725.1 MGP_AJ_G0032392.1 mouse_genomes_project 7 80394440 80403001 - MGP_AJ_P0084725 Man2a2 protein_coding nonsense_mediated_decay MGP_AJ_T0084726.1 MGP_AJ_G0032392.1 mouse_genomes_project 7 80398156 80406930 - Man2a2 protein_coding retained_intron MGP_AJ_T0084727.1 MGP_AJ_G0032392.1 mouse_genomes_project 7 80402389 80403167 - Man2a2 protein_coding retained_intron MGP_AJ_T0084728.1 MGP_AJ_G0032392.1 mouse_genomes_project 7 80402972 80406758 - MGP_AJ_P0084728 Man2a2 protein_coding nonsense_mediated_decay MGP_AJ_T0084729.1 MGP_AJ_G0032392.1 mouse_genomes_project 7 80403543 80414109 - MGP_AJ_P0084729 Man2a2 protein_coding nonsense_mediated_decay MGP_AJ_T0084730.1 MGP_AJ_G0032392.1 mouse_genomes_project 7 80403709 80414374 - Man2a2 protein_coding retained_intron MGP_AJ_T0084731.1 MGP_AJ_G0032392.1 mouse_genomes_project 7 80405923 80406918 - Man2a2 protein_coding retained_intron MGP_AJ_T0084732.1 MGP_AJ_G0032392.1 mouse_genomes_project 7 80412880 80414106 - MGP_AJ_P0084732 Man2a2 protein_coding protein_coding MGP_AJ_T0084733.1 MGP_AJ_G0032392.1 mouse_genomes_project 7 80412908 80414330 - MGP_AJ_P0084733 Man2a2 protein_coding protein_coding MGP_AJ_T0086918.1 MGP_AJ_G0033030.1 mouse_genomes_project 7 128459201 128466594 - MGP_AJ_P0086918 Zfp629 protein_coding protein_coding MGP_AJ_T0086919.1 MGP_AJ_G0033030.1 mouse_genomes_project 7 128459201 128467433 - MGP_AJ_P0086919 Zfp629 protein_coding protein_coding MGP_AJ_T0086920.1 MGP_AJ_G0033030.1 mouse_genomes_project 7 128459201 128467376 - MGP_AJ_P0086920 Zfp629 protein_coding protein_coding MGP_AJ_T0086921.1 MGP_AJ_G0033030.1 mouse_genomes_project 7 128460625 128467028 - MGP_AJ_P0086921 Zfp629 protein_coding protein_coding MGP_AJ_T0086922.1 MGP_AJ_G0033030.1 mouse_genomes_project 7 128460757 128467419 - MGP_AJ_P0086922 Zfp629 protein_coding protein_coding MGP_AJ_T0086923.1 MGP_AJ_G0033030.1 mouse_genomes_project 7 128460926 128467958 - MGP_AJ_P0086923 Zfp629 protein_coding protein_coding MGP_AJ_T0086924.1 MGP_AJ_G0033030.1 mouse_genomes_project 7 128464074 128466521 - MGP_AJ_P0086924 Zfp629 protein_coding protein_coding MGP_AJ_T0086925.1 MGP_AJ_G0033030.1 mouse_genomes_project 7 128464154 128467361 - MGP_AJ_P0086925 Zfp629 protein_coding protein_coding MGP_AJ_T0086926.1 MGP_AJ_G0033030.1 mouse_genomes_project 7 128464221 128466526 - MGP_AJ_P0086926 Zfp629 protein_coding protein_coding MGP_AJ_T0087446.1 MGP_AJ_G0033144.1 mouse_genomes_project 7 141042791 141046593 + MGP_AJ_P0087446 Prap1 protein_coding protein_coding MGP_AJ_T0085874.1 MGP_AJ_G0032822.1 mouse_genomes_project 7 109673822 109723029 - MGP_AJ_P0085874 Ric3 protein_coding protein_coding MGP_AJ_T0085875.1 MGP_AJ_G0032822.1 mouse_genomes_project 7 109673822 109697088 - MGP_AJ_P0085875 Ric3 protein_coding nonsense_mediated_decay MGP_AJ_T0085876.1 MGP_AJ_G0032822.1 mouse_genomes_project 7 109677458 109723020 - MGP_AJ_P0085876 Ric3 protein_coding protein_coding MGP_AJ_T0085877.1 MGP_AJ_G0032822.1 mouse_genomes_project 7 109684898 109723009 - Ric3 protein_coding retained_intron MGP_AJ_T0085878.1 MGP_AJ_G0032822.1 mouse_genomes_project 7 109696750 109723020 - Ric3 protein_coding retained_intron MGP_AJ_T0085879.1 MGP_AJ_G0032822.1 mouse_genomes_project 7 109720441 109723003 - Ric3 protein_coding processed_transcript MGP_AJ_T0015900.1 MGP_AJ_G0013995.1 mouse_genomes_project 7 100908970 100909407 + processed_pseudogene processed_pseudogene MGP_AJ_T0084936.1 MGP_AJ_G0032446.1 mouse_genomes_project 7 86499663 86500719 - MGP_AJ_P0084936 Olfr308 protein_coding protein_coding MGP_AJ_T0085846.1 MGP_AJ_G0032798.1 mouse_genomes_project 7 108944792 108945725 + MGP_AJ_P0085846 Olfr491 protein_coding protein_coding MGP_AJ_T0002291.1 MGP_AJ_G0002202.1 mouse_genomes_project 7 120228805 120231408 + TEC TEC MGP_AJ_T0085724.1 MGP_AJ_G0032738.1 mouse_genomes_project 7 106044091 106050306 - MGP_AJ_P0085724 Arfip2 protein_coding protein_coding MGP_AJ_T0085725.1 MGP_AJ_G0032738.1 mouse_genomes_project 7 106044095 106049804 - Arfip2 protein_coding retained_intron MGP_AJ_T0085726.1 MGP_AJ_G0032738.1 mouse_genomes_project 7 106045509 106050204 - MGP_AJ_P0085726 Arfip2 protein_coding nonsense_mediated_decay MGP_AJ_T0085727.1 MGP_AJ_G0032738.1 mouse_genomes_project 7 106045512 106047791 - Arfip2 protein_coding processed_transcript MGP_AJ_T0085728.1 MGP_AJ_G0032738.1 mouse_genomes_project 7 106045544 106050227 - MGP_AJ_P0085728 Arfip2 protein_coding nonsense_mediated_decay MGP_AJ_T0085729.1 MGP_AJ_G0032738.1 mouse_genomes_project 7 106045545 106050241 - MGP_AJ_P0085729 Arfip2 protein_coding protein_coding MGP_AJ_T0085730.1 MGP_AJ_G0032738.1 mouse_genomes_project 7 106046790 106047934 - Arfip2 protein_coding processed_transcript MGP_AJ_T0085731.1 MGP_AJ_G0032738.1 mouse_genomes_project 7 106047008 106047804 - Arfip2 protein_coding processed_transcript MGP_AJ_T0085732.1 MGP_AJ_G0032738.1 mouse_genomes_project 7 106047076 106050198 - MGP_AJ_P0085732 Arfip2 protein_coding protein_coding MGP_AJ_T0085733.1 MGP_AJ_G0032738.1 mouse_genomes_project 7 106047736 106050225 - MGP_AJ_P0085733 Arfip2 protein_coding nonsense_mediated_decay MGP_AJ_T0085734.1 MGP_AJ_G0032738.1 mouse_genomes_project 7 106048476 106050230 - Arfip2 protein_coding retained_intron MGP_AJ_T0084991.1 MGP_AJ_G0032474.1 mouse_genomes_project 7 90095142 90121452 - MGP_AJ_P0084991 l7Rn6 protein_coding protein_coding MGP_AJ_T0084992.1 MGP_AJ_G0032474.1 mouse_genomes_project 7 90096849 90121639 - MGP_AJ_P0084992 l7Rn6 protein_coding protein_coding MGP_AJ_T0084993.1 MGP_AJ_G0032474.1 mouse_genomes_project 7 90098020 90121520 - MGP_AJ_P0084993 l7Rn6 protein_coding nonsense_mediated_decay MGP_AJ_T0084994.1 MGP_AJ_G0032474.1 mouse_genomes_project 7 90098237 90121538 - MGP_AJ_P0084994 l7Rn6 protein_coding protein_coding MGP_AJ_T0084995.1 MGP_AJ_G0032474.1 mouse_genomes_project 7 90098889 90103330 - l7Rn6 protein_coding retained_intron MGP_AJ_T0084996.1 MGP_AJ_G0032474.1 mouse_genomes_project 7 90109572 90121619 - l7Rn6 protein_coding processed_transcript MGP_AJ_T0102869.1 MGP_AJ_G0040609.1 mouse_genomes_project 7 85375828 85417023 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0083546.1 MGP_AJ_G0032118.1 mouse_genomes_project 7 42733936 42745089 + MGP_AJ_P0083546 Zfp819 protein_coding protein_coding MGP_AJ_T0083547.1 MGP_AJ_G0032118.1 mouse_genomes_project 7 42733976 42739051 + MGP_AJ_P0083547 Zfp819 protein_coding protein_coding MGP_AJ_T0083548.1 MGP_AJ_G0032118.1 mouse_genomes_project 7 42733992 42745158 + MGP_AJ_P0083548 Zfp819 protein_coding protein_coding MGP_AJ_T0083549.1 MGP_AJ_G0032118.1 mouse_genomes_project 7 42736674 42744791 + MGP_AJ_P0083549 Zfp819 protein_coding protein_coding MGP_AJ_T0018406.1 MGP_AJ_G0015662.1 mouse_genomes_project 7 110079319 110085623 + 1700095J03Rik processed_transcript processed_transcript MGP_AJ_T0010879.1 MGP_AJ_G0009001.1 mouse_genomes_project 7 61599135 61599215 - Mir344d-3 miRNA miRNA MGP_AJ_T0015749.1 MGP_AJ_G0013844.1 mouse_genomes_project 7 23670865 23671481 - processed_pseudogene processed_pseudogene MGP_AJ_T0005254.1 MGP_AJ_G0004463.1 mouse_genomes_project 7 97032389 97038190 - Gm15416 antisense antisense MGP_AJ_T0087269.1 MGP_AJ_G0033101.1 mouse_genomes_project 7 133907529 134047477 - MGP_AJ_P0087269 Ctbp2 protein_coding protein_coding MGP_AJ_T0087270.1 MGP_AJ_G0033101.1 mouse_genomes_project 7 133907529 133935215 - MGP_AJ_P0087270 Ctbp2 protein_coding protein_coding MGP_AJ_T0087271.1 MGP_AJ_G0033101.1 mouse_genomes_project 7 133907529 133935457 - MGP_AJ_P0087271 Ctbp2 protein_coding nonsense_mediated_decay MGP_AJ_T0087272.1 MGP_AJ_G0033101.1 mouse_genomes_project 7 133907529 134047678 - MGP_AJ_P0087272 Ctbp2 protein_coding protein_coding MGP_AJ_T0087273.1 MGP_AJ_G0033101.1 mouse_genomes_project 7 133911565 133944166 - MGP_AJ_P0087273 Ctbp2 protein_coding protein_coding MGP_AJ_T0087274.1 MGP_AJ_G0033101.1 mouse_genomes_project 7 133915032 134046512 - MGP_AJ_P0087274 Ctbp2 protein_coding protein_coding MGP_AJ_T0087275.1 MGP_AJ_G0033101.1 mouse_genomes_project 7 133934433 134047763 - Ctbp2 protein_coding processed_transcript MGP_AJ_T0087276.1 MGP_AJ_G0033101.1 mouse_genomes_project 7 133934433 134047659 - Ctbp2 protein_coding processed_transcript MGP_AJ_T0087277.1 MGP_AJ_G0033101.1 mouse_genomes_project 7 133934623 134047657 - MGP_AJ_P0087277 Ctbp2 protein_coding protein_coding MGP_AJ_T0087278.1 MGP_AJ_G0033101.1 mouse_genomes_project 7 133934697 134036996 - Ctbp2 protein_coding processed_transcript MGP_AJ_T0087279.1 MGP_AJ_G0033101.1 mouse_genomes_project 7 133934802 133950604 - Ctbp2 protein_coding processed_transcript MGP_AJ_T0087280.1 MGP_AJ_G0033101.1 mouse_genomes_project 7 133934820 134047973 - Ctbp2 protein_coding processed_transcript MGP_AJ_T0087281.1 MGP_AJ_G0033101.1 mouse_genomes_project 7 133935088 134046927 - MGP_AJ_P0087281 Ctbp2 protein_coding protein_coding MGP_AJ_T0087282.1 MGP_AJ_G0033101.1 mouse_genomes_project 7 133935130 134047736 - MGP_AJ_P0087282 Ctbp2 protein_coding protein_coding MGP_AJ_T0087283.1 MGP_AJ_G0033101.1 mouse_genomes_project 7 133946108 134048557 - MGP_AJ_P0087283 Ctbp2 protein_coding protein_coding MGP_AJ_T0087284.1 MGP_AJ_G0033101.1 mouse_genomes_project 7 133946126 134036088 - MGP_AJ_P0087284 Ctbp2 protein_coding protein_coding MGP_AJ_T0087285.1 MGP_AJ_G0033101.1 mouse_genomes_project 7 133946127 134047623 - MGP_AJ_P0087285 Ctbp2 protein_coding protein_coding MGP_AJ_T0087286.1 MGP_AJ_G0033101.1 mouse_genomes_project 7 133946170 134048059 - MGP_AJ_P0087286 Ctbp2 protein_coding protein_coding MGP_AJ_T0087287.1 MGP_AJ_G0033101.1 mouse_genomes_project 7 133964449 134048059 - Ctbp2 protein_coding processed_transcript MGP_AJ_T0087288.1 MGP_AJ_G0033101.1 mouse_genomes_project 7 134004278 134047495 - Ctbp2 protein_coding retained_intron MGP_AJ_T0102797.1 MGP_AJ_G0031828.1 mouse_genomes_project 7 22767185 22767771 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0008935.1 MGP_AJ_G0007213.1 mouse_genomes_project 7 74721630 74756564 - 0610006L08Rik lincRNA lincRNA MGP_AJ_T0008936.1 MGP_AJ_G0007213.1 mouse_genomes_project 7 74726445 74756561 - 0610006L08Rik lincRNA lincRNA MGP_AJ_T0083578.1 MGP_AJ_G0032133.1 mouse_genomes_project 7 43065627 43071368 + MGP_AJ_P0083578 Klk15 protein_coding protein_coding MGP_AJ_T0083579.1 MGP_AJ_G0032133.1 mouse_genomes_project 7 43065680 43070459 + MGP_AJ_P0083579 Klk15 protein_coding protein_coding MGP_AJ_T0084094.1 MGP_AJ_G0032256.1 mouse_genomes_project 7 46349109 46385484 - MGP_AJ_P0084094 Uevld protein_coding protein_coding MGP_AJ_T0087630.1 MGP_AJ_G0033205.1 mouse_genomes_project 7 142290329 142320936 - MGP_AJ_P0087630 Deaf1 protein_coding protein_coding MGP_AJ_T0083726.1 MGP_AJ_G0032159.1 mouse_genomes_project 7 44204449 44212456 - Tbc1d17 protein_coding retained_intron MGP_AJ_T0083727.1 MGP_AJ_G0032159.1 mouse_genomes_project 7 44204569 44212620 - MGP_AJ_P0083727 Tbc1d17 protein_coding protein_coding MGP_AJ_T0083728.1 MGP_AJ_G0032159.1 mouse_genomes_project 7 44204576 44212624 - MGP_AJ_P0083728 Tbc1d17 protein_coding nonsense_mediated_decay MGP_AJ_T0083729.1 MGP_AJ_G0032159.1 mouse_genomes_project 7 44204577 44212435 - Tbc1d17 protein_coding retained_intron MGP_AJ_T0083730.1 MGP_AJ_G0032159.1 mouse_genomes_project 7 44206924 44207869 - Tbc1d17 protein_coding retained_intron MGP_AJ_T0083731.1 MGP_AJ_G0032159.1 mouse_genomes_project 7 44208121 44209545 - Tbc1d17 protein_coding retained_intron MGP_AJ_T0083732.1 MGP_AJ_G0032159.1 mouse_genomes_project 7 44211570 44212440 - Tbc1d17 protein_coding retained_intron MGP_AJ_T0083733.1 MGP_AJ_G0032159.1 mouse_genomes_project 7 44211819 44212139 - Tbc1d17 protein_coding retained_intron MGP_AJ_T0102752.1 MGP_AJ_G0040493.1 mouse_genomes_project 7 8847530 8848453 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0087492.1 MGP_AJ_G0033163.1 mouse_genomes_project 7 141442217 141448703 - MGP_AJ_P0087492 Olfr536 protein_coding protein_coding MGP_AJ_T0081974.1 MGP_AJ_G0031724.1 mouse_genomes_project 7 16562516 16601351 + MGP_AJ_P0081974 Nova2 protein_coding protein_coding MGP_AJ_T0081599.1 MGP_AJ_G0031577.1 mouse_genomes_project 7 3385920 3418330 + MGP_AJ_P0081599 Smim17 protein_coding protein_coding MGP_AJ_T0081600.1 MGP_AJ_G0031577.1 mouse_genomes_project 7 3385953 3396388 + Smim17 protein_coding processed_transcript MGP_AJ_T0081602.1 MGP_AJ_G0031577.1 mouse_genomes_project 7 3404073 3420973 + MGP_AJ_P0081602 Smim17 protein_coding protein_coding MGP_AJ_T0084286.1 MGP_AJ_G0032313.1 mouse_genomes_project 7 64019404 64139826 + MGP_AJ_P0084286 Trpm1 protein_coding protein_coding MGP_AJ_T0084287.1 MGP_AJ_G0032313.1 mouse_genomes_project 7 64019414 64139183 + MGP_AJ_P0084287 Trpm1 protein_coding protein_coding MGP_AJ_T0084288.1 MGP_AJ_G0032313.1 mouse_genomes_project 7 64019414 64096635 + MGP_AJ_P0084288 Trpm1 protein_coding nonsense_mediated_decay MGP_AJ_T0084289.1 MGP_AJ_G0032313.1 mouse_genomes_project 7 64019497 64139183 + MGP_AJ_P0084289 Trpm1 protein_coding protein_coding MGP_AJ_T0084290.1 MGP_AJ_G0032313.1 mouse_genomes_project 7 64055051 64081395 + Trpm1 protein_coding retained_intron MGP_AJ_T0084291.1 MGP_AJ_G0032313.1 mouse_genomes_project 7 64055129 64068925 + Trpm1 protein_coding processed_transcript MGP_AJ_T0084292.1 MGP_AJ_G0032313.1 mouse_genomes_project 7 64055129 64094732 + MGP_AJ_P0084292 Trpm1 protein_coding protein_coding MGP_AJ_T0084293.1 MGP_AJ_G0032313.1 mouse_genomes_project 7 64055220 64094660 + Trpm1 protein_coding retained_intron MGP_AJ_T0084294.1 MGP_AJ_G0032313.1 mouse_genomes_project 7 64055222 64139808 + MGP_AJ_P0084294 Trpm1 protein_coding protein_coding MGP_AJ_T0084295.1 MGP_AJ_G0032313.1 mouse_genomes_project 7 64055223 64072057 + MGP_AJ_P0084295 Trpm1 protein_coding protein_coding MGP_AJ_T0084296.1 MGP_AJ_G0032313.1 mouse_genomes_project 7 64055225 64088631 + MGP_AJ_P0084296 Trpm1 protein_coding protein_coding MGP_AJ_T0084297.1 MGP_AJ_G0032313.1 mouse_genomes_project 7 64055254 64088631 + MGP_AJ_P0084297 Trpm1 protein_coding protein_coding MGP_AJ_T0084298.1 MGP_AJ_G0032313.1 mouse_genomes_project 7 64055271 64072030 + MGP_AJ_P0084298 Trpm1 protein_coding protein_coding MGP_AJ_T0084299.1 MGP_AJ_G0032313.1 mouse_genomes_project 7 64068903 64072173 + MGP_AJ_P0084299 Trpm1 protein_coding protein_coding MGP_AJ_T0084300.1 MGP_AJ_G0032313.1 mouse_genomes_project 7 64073149 64080857 + Trpm1 protein_coding processed_transcript MGP_AJ_T0084301.1 MGP_AJ_G0032313.1 mouse_genomes_project 7 64073149 64078297 + MGP_AJ_P0084301 Trpm1 protein_coding protein_coding MGP_AJ_T0084302.1 MGP_AJ_G0032313.1 mouse_genomes_project 7 64079990 64090252 + Trpm1 protein_coding retained_intron MGP_AJ_T0084303.1 MGP_AJ_G0032313.1 mouse_genomes_project 7 64080876 64093656 + MGP_AJ_P0084303 Trpm1 protein_coding protein_coding MGP_AJ_T0084304.1 MGP_AJ_G0032313.1 mouse_genomes_project 7 64089770 64093119 + Trpm1 protein_coding retained_intron MGP_AJ_T0084305.1 MGP_AJ_G0032313.1 mouse_genomes_project 7 64096476 64112697 + Trpm1 protein_coding retained_intron MGP_AJ_T0084306.1 MGP_AJ_G0032313.1 mouse_genomes_project 7 64096843 64101260 + Trpm1 protein_coding processed_transcript MGP_AJ_T0084307.1 MGP_AJ_G0032313.1 mouse_genomes_project 7 64114919 64138191 + Trpm1 protein_coding retained_intron MGP_AJ_T0084308.1 MGP_AJ_G0032313.1 mouse_genomes_project 7 64115132 64138071 + MGP_AJ_P0084308 Trpm1 protein_coding protein_coding MGP_AJ_T0082925.1 MGP_AJ_G0031982.1 mouse_genomes_project 7 28397400 28405428 - MGP_AJ_P0082925 Capns1 protein_coding protein_coding MGP_AJ_T0082926.1 MGP_AJ_G0031982.1 mouse_genomes_project 7 28397448 28403338 - MGP_AJ_P0082926 Capns1 protein_coding protein_coding MGP_AJ_T0082927.1 MGP_AJ_G0031982.1 mouse_genomes_project 7 28397626 28400470 - Capns1 protein_coding processed_transcript MGP_AJ_T0082928.1 MGP_AJ_G0031982.1 mouse_genomes_project 7 28397941 28404013 - Capns1 protein_coding processed_transcript MGP_AJ_T0082929.1 MGP_AJ_G0031982.1 mouse_genomes_project 7 28397965 28402644 - Capns1 protein_coding processed_transcript MGP_AJ_T0082930.1 MGP_AJ_G0031982.1 mouse_genomes_project 7 28400293 28404327 - MGP_AJ_P0082930 Capns1 protein_coding protein_coding MGP_AJ_T0082931.1 MGP_AJ_G0031982.1 mouse_genomes_project 7 28403777 28405300 - Capns1 protein_coding retained_intron MGP_AJ_T0002224.1 MGP_AJ_G0002136.1 mouse_genomes_project 7 43738423 43741178 + TEC TEC MGP_AJ_T0002237.1 MGP_AJ_G0002149.1 mouse_genomes_project 7 55968928 55972948 - TEC TEC MGP_AJ_T0015720.1 MGP_AJ_G0013815.1 mouse_genomes_project 7 11479641 11481799 - processed_pseudogene processed_pseudogene MGP_AJ_T0085693.1 MGP_AJ_G0032733.1 mouse_genomes_project 7 105887198 105888789 - MGP_AJ_P0085693 Prkcdbp protein_coding protein_coding MGP_AJ_T0081253.1 MGP_AJ_G0031491.1 mouse_genomes_project 7 196943 212040 + Prkcg protein_coding processed_transcript MGP_AJ_T0081258.1 MGP_AJ_G0031491.1 mouse_genomes_project 7 211250 238862 + MGP_AJ_P0081258 Prkcg protein_coding protein_coding MGP_AJ_T0081259.1 MGP_AJ_G0031491.1 mouse_genomes_project 7 211373 238141 + MGP_AJ_P0081259 Prkcg protein_coding protein_coding MGP_AJ_T0081260.1 MGP_AJ_G0031491.1 mouse_genomes_project 7 213077 226833 + MGP_AJ_P0081260 Prkcg protein_coding nonsense_mediated_decay MGP_AJ_T0081261.1 MGP_AJ_G0031491.1 mouse_genomes_project 7 236611 237794 + Prkcg protein_coding retained_intron MGP_AJ_T0011677.1 MGP_AJ_G0009799.1 mouse_genomes_project 7 3831553 3831851 - Gm22649 misc_RNA misc_RNA MGP_AJ_T0085600.1 MGP_AJ_G0032676.1 mouse_genomes_project 7 104524779 104525718 + MGP_AJ_P0085600 Olfr646 protein_coding protein_coding MGP_AJ_T0087486.1 MGP_AJ_G0033157.1 mouse_genomes_project 7 141289654 141290590 - MGP_AJ_P0087486 Olfr60 protein_coding protein_coding MGP_AJ_T0083791.1 MGP_AJ_G0032181.1 mouse_genomes_project 7 44503828 44509072 - MGP_AJ_P0083791 protein_coding protein_coding MGP_AJ_T0010859.1 MGP_AJ_G0008981.1 mouse_genomes_project 7 42584285 42584358 + Mir7051 miRNA miRNA MGP_AJ_T0085986.1 MGP_AJ_G0032847.1 mouse_genomes_project 7 111739120 111750874 - MGP_AJ_P0085986 Eif4g2 protein_coding protein_coding MGP_AJ_T0085987.1 MGP_AJ_G0032847.1 mouse_genomes_project 7 111740925 111741708 - Eif4g2 protein_coding processed_transcript MGP_AJ_T0085988.1 MGP_AJ_G0032847.1 mouse_genomes_project 7 111741148 111742818 - Eif4g2 protein_coding retained_intron MGP_AJ_T0085989.1 MGP_AJ_G0032847.1 mouse_genomes_project 7 111741956 111742806 - MGP_AJ_P0085989 Eif4g2 protein_coding protein_coding MGP_AJ_T0085990.1 MGP_AJ_G0032847.1 mouse_genomes_project 7 111742694 111743256 - Eif4g2 protein_coding retained_intron MGP_AJ_T0085991.1 MGP_AJ_G0032847.1 mouse_genomes_project 7 111743429 111743942 - Eif4g2 protein_coding retained_intron MGP_AJ_T0085992.1 MGP_AJ_G0032847.1 mouse_genomes_project 7 111743768 111744766 - Eif4g2 protein_coding processed_transcript MGP_AJ_T0085993.1 MGP_AJ_G0032847.1 mouse_genomes_project 7 111745079 111746308 - Eif4g2 protein_coding retained_intron MGP_AJ_T0085994.1 MGP_AJ_G0032847.1 mouse_genomes_project 7 111746506 111747921 - Eif4g2 protein_coding retained_intron MGP_AJ_T0085995.1 MGP_AJ_G0032847.1 mouse_genomes_project 7 111746978 111751574 - MGP_AJ_P0085995 Eif4g2 protein_coding protein_coding MGP_AJ_T0085996.1 MGP_AJ_G0032847.1 mouse_genomes_project 7 111747894 111750750 - MGP_AJ_P0085996 Eif4g2 protein_coding protein_coding MGP_AJ_T0085997.1 MGP_AJ_G0032847.1 mouse_genomes_project 7 111748973 111751382 - Eif4g2 protein_coding retained_intron MGP_AJ_T0085998.1 MGP_AJ_G0032847.1 mouse_genomes_project 7 111749471 111750408 - MGP_AJ_P0085998 Eif4g2 protein_coding protein_coding MGP_AJ_T0082356.1 MGP_AJ_G0031837.1 mouse_genomes_project 7 23088676 23097720 - MGP_AJ_P0082356 Erf protein_coding protein_coding MGP_AJ_T0082357.1 MGP_AJ_G0031837.1 mouse_genomes_project 7 23092410 23097689 - MGP_AJ_P0082357 Erf protein_coding protein_coding MGP_AJ_T0083789.1 MGP_AJ_G0032179.1 mouse_genomes_project 7 44495109 44497111 - MGP_AJ_P0083789 Rps11 protein_coding protein_coding MGP_AJ_T0085793.1 MGP_AJ_G0032753.1 mouse_genomes_project 7 107356445 107357381 - MGP_AJ_P0085793 Olfr698 protein_coding protein_coding MGP_AJ_T0101439.1 MGP_AJ_G0039405.1 mouse_genomes_project 7 107018090 107018226 + Gm22372 snoRNA snoRNA MGP_AJ_T0018334.1 MGP_AJ_G0015634.1 mouse_genomes_project 7 25269366 25280354 + Gm44641 processed_transcript processed_transcript MGP_AJ_T0081945.1 MGP_AJ_G0031712.1 mouse_genomes_project 7 15868203 16143746 - MGP_AJ_P0081945 protein_coding protein_coding MGP_AJ_T0081946.1 MGP_AJ_G0031712.1 mouse_genomes_project 7 15868465 16430093 - protein_coding processed_transcript MGP_AJ_T0081947.1 MGP_AJ_G0031712.1 mouse_genomes_project 7 15870991 16050134 - MGP_AJ_P0081947 protein_coding protein_coding MGP_AJ_T0015731.1 MGP_AJ_G0013826.1 mouse_genomes_project 7 15179729 15180196 - processed_pseudogene processed_pseudogene MGP_AJ_T0082689.1 MGP_AJ_G0031922.1 mouse_genomes_project 7 26509764 26516524 - MGP_AJ_P0082689 Med29 protein_coding protein_coding MGP_AJ_T0085567.1 MGP_AJ_G0032645.1 mouse_genomes_project 7 104005060 104006023 + MGP_AJ_P0085567 Olfr619 protein_coding protein_coding MGP_AJ_T0083001.1 MGP_AJ_G0031999.1 mouse_genomes_project 7 28662128 28664871 + MGP_AJ_P0083001 protein_coding protein_coding MGP_AJ_T0083002.1 MGP_AJ_G0031999.1 mouse_genomes_project 7 28663577 28689627 + MGP_AJ_P0083002 protein_coding protein_coding MGP_AJ_T0083003.1 MGP_AJ_G0031999.1 mouse_genomes_project 7 28678310 28685467 + protein_coding retained_intron MGP_AJ_T0083004.1 MGP_AJ_G0031999.1 mouse_genomes_project 7 28681258 28689289 + MGP_AJ_P0083004 protein_coding nonsense_mediated_decay MGP_AJ_T0083005.1 MGP_AJ_G0031999.1 mouse_genomes_project 7 28688662 28689396 + protein_coding retained_intron MGP_AJ_T0082169.1 MGP_AJ_G0031780.1 mouse_genomes_project 7 17640130 17668633 + MGP_AJ_P0082169 Ceacam20 protein_coding protein_coding MGP_AJ_T0087880.1 MGP_AJ_G0033249.1 mouse_genomes_project 7 143946641 143949084 - MGP_AJ_P0087880 Ascl2 protein_coding protein_coding MGP_AJ_T0087881.1 MGP_AJ_G0033249.1 mouse_genomes_project 7 143946648 143949084 - MGP_AJ_P0087881 Ascl2 protein_coding protein_coding MGP_AJ_T0087854.1 MGP_AJ_G0033244.1 mouse_genomes_project 7 143645891 143652622 - MGP_AJ_P0087854 Igf2 protein_coding protein_coding MGP_AJ_T0087855.1 MGP_AJ_G0033244.1 mouse_genomes_project 7 143645894 143654615 - MGP_AJ_P0087855 Igf2 protein_coding protein_coding MGP_AJ_T0087856.1 MGP_AJ_G0033244.1 mouse_genomes_project 7 143645894 143652592 - MGP_AJ_P0087856 Igf2 protein_coding protein_coding MGP_AJ_T0087857.1 MGP_AJ_G0033244.1 mouse_genomes_project 7 143645894 143656438 - MGP_AJ_P0087857 Igf2 protein_coding protein_coding MGP_AJ_T0087858.1 MGP_AJ_G0033244.1 mouse_genomes_project 7 143645968 143648156 - Igf2 protein_coding processed_transcript MGP_AJ_T0087859.1 MGP_AJ_G0033244.1 mouse_genomes_project 7 143648881 143662035 - MGP_AJ_P0087859 Igf2 protein_coding protein_coding MGP_AJ_T0087860.1 MGP_AJ_G0033244.1 mouse_genomes_project 7 143649174 143657003 - MGP_AJ_P0087860 Igf2 protein_coding protein_coding MGP_AJ_T0087861.1 MGP_AJ_G0033244.1 mouse_genomes_project 7 143649477 143651144 - MGP_AJ_P0087861 Igf2 protein_coding protein_coding MGP_AJ_T0087862.1 MGP_AJ_G0033244.1 mouse_genomes_project 7 143650567 143656338 - Igf2 protein_coding retained_intron MGP_AJ_T0084020.1 MGP_AJ_G0032239.1 mouse_genomes_project 7 45508040 45584628 - MGP_AJ_P0084020 Abcc8 protein_coding protein_coding MGP_AJ_T0084021.1 MGP_AJ_G0032239.1 mouse_genomes_project 7 45508041 45584544 - MGP_AJ_P0084021 Abcc8 protein_coding unknown_likely_coding MGP_AJ_T0087775.1 MGP_AJ_G0033227.1 mouse_genomes_project 7 143159996 143162547 - MGP_AJ_P0087775 protein_coding protein_coding MGP_AJ_T0015787.1 MGP_AJ_G0013882.1 mouse_genomes_project 7 32827236 32827652 + processed_pseudogene processed_pseudogene MGP_AJ_T0087572.1 MGP_AJ_G0033194.1 mouse_genomes_project 7 142111467 142145434 + MGP_AJ_P0087572 Ptdss2 protein_coding nonsense_mediated_decay MGP_AJ_T0087573.1 MGP_AJ_G0033194.1 mouse_genomes_project 7 142119347 142143969 + MGP_AJ_P0087573 Ptdss2 protein_coding protein_coding MGP_AJ_T0087574.1 MGP_AJ_G0033194.1 mouse_genomes_project 7 142119369 142143801 + MGP_AJ_P0087574 Ptdss2 protein_coding nonsense_mediated_decay MGP_AJ_T0087575.1 MGP_AJ_G0033194.1 mouse_genomes_project 7 142120377 142147999 + MGP_AJ_P0087575 Ptdss2 protein_coding protein_coding MGP_AJ_T0087576.1 MGP_AJ_G0033194.1 mouse_genomes_project 7 142120392 142145301 + Ptdss2 protein_coding retained_intron MGP_AJ_T0087577.1 MGP_AJ_G0033194.1 mouse_genomes_project 7 142120435 142133674 + Ptdss2 protein_coding processed_transcript MGP_AJ_T0087578.1 MGP_AJ_G0033194.1 mouse_genomes_project 7 142120447 142133174 + MGP_AJ_P0087578 Ptdss2 protein_coding nonsense_mediated_decay MGP_AJ_T0087579.1 MGP_AJ_G0033194.1 mouse_genomes_project 7 142121529 142137124 + MGP_AJ_P0087579 Ptdss2 protein_coding nonsense_mediated_decay MGP_AJ_T0087580.1 MGP_AJ_G0033194.1 mouse_genomes_project 7 142121644 142133703 + Ptdss2 protein_coding processed_transcript MGP_AJ_T0005317.1 MGP_AJ_G0004508.1 mouse_genomes_project 7 145374404 145412679 - Gm14372 antisense antisense MGP_AJ_T0081997.1 MGP_AJ_G0031733.1 mouse_genomes_project 7 16724123 16727218 + MGP_AJ_P0081997 Dmpk protein_coding protein_coding MGP_AJ_T0081998.1 MGP_AJ_G0031733.1 mouse_genomes_project 7 16724125 16734057 + MGP_AJ_P0081998 Dmpk protein_coding nonsense_mediated_decay MGP_AJ_T0081999.1 MGP_AJ_G0031733.1 mouse_genomes_project 7 16724196 16734058 + MGP_AJ_P0081999 Dmpk protein_coding protein_coding MGP_AJ_T0082000.1 MGP_AJ_G0031733.1 mouse_genomes_project 7 16724250 16734058 + MGP_AJ_P0082000 Dmpk protein_coding protein_coding MGP_AJ_T0082001.1 MGP_AJ_G0031733.1 mouse_genomes_project 7 16724965 16727958 + Dmpk protein_coding processed_transcript MGP_AJ_T0082002.1 MGP_AJ_G0031733.1 mouse_genomes_project 7 16726755 16734055 + Dmpk protein_coding retained_intron MGP_AJ_T0082003.1 MGP_AJ_G0031733.1 mouse_genomes_project 7 16726755 16734055 + Dmpk protein_coding retained_intron MGP_AJ_T0082004.1 MGP_AJ_G0031733.1 mouse_genomes_project 7 16726755 16734055 + Dmpk protein_coding processed_transcript MGP_AJ_T0082005.1 MGP_AJ_G0031733.1 mouse_genomes_project 7 16727525 16729389 + Dmpk protein_coding processed_transcript MGP_AJ_T0082006.1 MGP_AJ_G0031733.1 mouse_genomes_project 7 16727749 16728888 + Dmpk protein_coding processed_transcript MGP_AJ_T0082007.1 MGP_AJ_G0031733.1 mouse_genomes_project 7 16727867 16732004 + Dmpk protein_coding processed_transcript MGP_AJ_T0082008.1 MGP_AJ_G0031733.1 mouse_genomes_project 7 16728002 16729615 + Dmpk protein_coding retained_intron MGP_AJ_T0082009.1 MGP_AJ_G0031733.1 mouse_genomes_project 7 16728441 16733281 + Dmpk protein_coding processed_transcript MGP_AJ_T0082010.1 MGP_AJ_G0031733.1 mouse_genomes_project 7 16731719 16732598 + Dmpk protein_coding retained_intron MGP_AJ_T0082011.1 MGP_AJ_G0031733.1 mouse_genomes_project 7 16731852 16732772 + Dmpk protein_coding processed_transcript MGP_AJ_T0082012.1 MGP_AJ_G0031733.1 mouse_genomes_project 7 16732454 16734007 + Dmpk protein_coding processed_transcript MGP_AJ_T0082013.1 MGP_AJ_G0031733.1 mouse_genomes_project 7 16732532 16733440 + Dmpk protein_coding retained_intron MGP_AJ_T0082204.1 MGP_AJ_G0031800.1 mouse_genomes_project 7 22025719 22027299 + MGP_AJ_P0082204 Zfp93 protein_coding protein_coding MGP_AJ_T0083872.1 MGP_AJ_G0032201.1 mouse_genomes_project 7 44821520 44843261 + MGP_AJ_P0083872 Gys1 protein_coding protein_coding MGP_AJ_T0083873.1 MGP_AJ_G0032201.1 mouse_genomes_project 7 44821553 44842472 + MGP_AJ_P0083873 Gys1 protein_coding protein_coding MGP_AJ_T0083874.1 MGP_AJ_G0032201.1 mouse_genomes_project 7 44834225 44838448 + Gys1 protein_coding processed_transcript MGP_AJ_T0083875.1 MGP_AJ_G0032201.1 mouse_genomes_project 7 44834351 44838472 + Gys1 protein_coding processed_transcript MGP_AJ_T0083876.1 MGP_AJ_G0032201.1 mouse_genomes_project 7 44834874 44841964 + Gys1 protein_coding retained_intron MGP_AJ_T0083877.1 MGP_AJ_G0032201.1 mouse_genomes_project 7 44837645 44838737 + Gys1 protein_coding retained_intron MGP_AJ_T0084899.1 MGP_AJ_G0032429.1 mouse_genomes_project 7 83732108 83744751 - Il16 protein_coding retained_intron MGP_AJ_T0084900.1 MGP_AJ_G0032429.1 mouse_genomes_project 7 83732324 83825775 - MGP_AJ_P0084900 Il16 protein_coding protein_coding MGP_AJ_T0084901.1 MGP_AJ_G0032429.1 mouse_genomes_project 7 83738831 83744581 - Il16 protein_coding retained_intron MGP_AJ_T0084902.1 MGP_AJ_G0032429.1 mouse_genomes_project 7 83750143 83835986 - MGP_AJ_P0084902 Il16 protein_coding nonsense_mediated_decay MGP_AJ_T0084903.1 MGP_AJ_G0032429.1 mouse_genomes_project 7 83812749 83822645 - MGP_AJ_P0084903 Il16 protein_coding protein_coding MGP_AJ_T0084904.1 MGP_AJ_G0032429.1 mouse_genomes_project 7 83812749 83830176 - MGP_AJ_P0084904 Il16 protein_coding protein_coding MGP_AJ_T0081642.1 MGP_AJ_G0031606.1 mouse_genomes_project 7 8957478 8958390 + MGP_AJ_P0081642 Vmn1r73 protein_coding protein_coding MGP_AJ_T0081850.1 MGP_AJ_G0031680.1 mouse_genomes_project 7 13798894 13859711 - MGP_AJ_P0081850 Sae1 protein_coding protein_coding MGP_AJ_T0081608.1 MGP_AJ_G0031584.1 mouse_genomes_project 7 3496463 3497783 - MGP_AJ_P0081608 Olfr1348 protein_coding protein_coding MGP_AJ_T0085464.1 MGP_AJ_G0032577.1 mouse_genomes_project 7 102447781 102453735 - MGP_AJ_P0085464 Art5 protein_coding protein_coding MGP_AJ_T0085465.1 MGP_AJ_G0032577.1 mouse_genomes_project 7 102447782 102451132 - MGP_AJ_P0085465 Art5 protein_coding protein_coding MGP_AJ_T0085466.1 MGP_AJ_G0032577.1 mouse_genomes_project 7 102448016 102450842 - MGP_AJ_P0085466 Art5 protein_coding protein_coding MGP_AJ_T0085467.1 MGP_AJ_G0032577.1 mouse_genomes_project 7 102448016 102450396 - MGP_AJ_P0085467 Art5 protein_coding protein_coding MGP_AJ_T0101408.1 MGP_AJ_G0039374.1 mouse_genomes_project 7 44499240 44499310 - Snord34 snoRNA snoRNA MGP_AJ_T0084744.1 MGP_AJ_G0032394.1 mouse_genomes_project 7 80432181 80439705 - Furin protein_coding retained_intron MGP_AJ_T0084745.1 MGP_AJ_G0032394.1 mouse_genomes_project 7 80432793 80446138 - MGP_AJ_P0084745 Furin protein_coding protein_coding MGP_AJ_T0084746.1 MGP_AJ_G0032394.1 mouse_genomes_project 7 80432793 80448812 - MGP_AJ_P0084746 Furin protein_coding protein_coding MGP_AJ_T0084747.1 MGP_AJ_G0032394.1 mouse_genomes_project 7 80432795 80445083 - MGP_AJ_P0084747 Furin protein_coding protein_coding MGP_AJ_T0084748.1 MGP_AJ_G0032394.1 mouse_genomes_project 7 80439351 80445953 - MGP_AJ_P0084748 Furin protein_coding nonsense_mediated_decay MGP_AJ_T0084749.1 MGP_AJ_G0032394.1 mouse_genomes_project 7 80439661 80442816 - Furin protein_coding retained_intron MGP_AJ_T0084750.1 MGP_AJ_G0032394.1 mouse_genomes_project 7 80441940 80448817 - MGP_AJ_P0084750 Furin protein_coding protein_coding MGP_AJ_T0084751.1 MGP_AJ_G0032394.1 mouse_genomes_project 7 80441987 80446699 - MGP_AJ_P0084751 Furin protein_coding protein_coding MGP_AJ_T0084972.1 MGP_AJ_G0032468.1 mouse_genomes_project 7 89365001 89562299 - MGP_AJ_P0084972 Tmem135 protein_coding protein_coding MGP_AJ_T0084973.1 MGP_AJ_G0032468.1 mouse_genomes_project 7 89367134 89378022 - Tmem135 protein_coding retained_intron MGP_AJ_T0084974.1 MGP_AJ_G0032468.1 mouse_genomes_project 7 89371349 89562272 - MGP_AJ_P0084974 Tmem135 protein_coding protein_coding MGP_AJ_T0084975.1 MGP_AJ_G0032468.1 mouse_genomes_project 7 89377848 89383337 - Tmem135 protein_coding processed_transcript MGP_AJ_T0084976.1 MGP_AJ_G0032468.1 mouse_genomes_project 7 89380167 89621257 - Tmem135 protein_coding processed_transcript MGP_AJ_T0084977.1 MGP_AJ_G0032468.1 mouse_genomes_project 7 89382697 89521266 - Tmem135 protein_coding processed_transcript MGP_AJ_T0084978.1 MGP_AJ_G0032468.1 mouse_genomes_project 7 89527462 89562203 - Tmem135 protein_coding retained_intron MGP_AJ_T0084979.1 MGP_AJ_G0032468.1 mouse_genomes_project 7 89528442 89562249 - MGP_AJ_P0084979 Tmem135 protein_coding protein_coding MGP_AJ_T0086567.1 MGP_AJ_G0032969.1 mouse_genomes_project 7 127392226 127406424 - MGP_AJ_P0086567 Cln3 protein_coding protein_coding MGP_AJ_T0086568.1 MGP_AJ_G0032969.1 mouse_genomes_project 7 127392419 127403851 - MGP_AJ_P0086568 Cln3 protein_coding protein_coding MGP_AJ_T0086569.1 MGP_AJ_G0032969.1 mouse_genomes_project 7 127392419 127404884 - MGP_AJ_P0086569 Cln3 protein_coding protein_coding MGP_AJ_T0086570.1 MGP_AJ_G0032969.1 mouse_genomes_project 7 127393104 127403794 - MGP_AJ_P0086570 Cln3 protein_coding protein_coding MGP_AJ_T0086571.1 MGP_AJ_G0032969.1 mouse_genomes_project 7 127393108 127395881 - Cln3 protein_coding processed_transcript MGP_AJ_T0086572.1 MGP_AJ_G0032969.1 mouse_genomes_project 7 127393126 127393747 - Cln3 protein_coding processed_transcript MGP_AJ_T0086573.1 MGP_AJ_G0032969.1 mouse_genomes_project 7 127393140 127398505 - Cln3 protein_coding retained_intron MGP_AJ_T0086574.1 MGP_AJ_G0032969.1 mouse_genomes_project 7 127399000 127404911 - Cln3 protein_coding retained_intron MGP_AJ_T0086575.1 MGP_AJ_G0032969.1 mouse_genomes_project 7 127399852 127403830 - Cln3 protein_coding processed_transcript MGP_AJ_T0086576.1 MGP_AJ_G0032969.1 mouse_genomes_project 7 127399888 127403966 - MGP_AJ_P0086576 Cln3 protein_coding nonsense_mediated_decay MGP_AJ_T0086577.1 MGP_AJ_G0032969.1 mouse_genomes_project 7 127399904 127404824 - MGP_AJ_P0086577 Cln3 protein_coding protein_coding MGP_AJ_T0086578.1 MGP_AJ_G0032969.1 mouse_genomes_project 7 127400050 127404127 - MGP_AJ_P0086578 Cln3 protein_coding protein_coding MGP_AJ_T0086579.1 MGP_AJ_G0032969.1 mouse_genomes_project 7 127400845 127403718 - Cln3 protein_coding retained_intron MGP_AJ_T0086580.1 MGP_AJ_G0032969.1 mouse_genomes_project 7 127401406 127403920 - Cln3 protein_coding retained_intron MGP_AJ_T0086581.1 MGP_AJ_G0032969.1 mouse_genomes_project 7 127402088 127403946 - Cln3 protein_coding processed_transcript MGP_AJ_T0086582.1 MGP_AJ_G0032969.1 mouse_genomes_project 7 127402233 127404170 - MGP_AJ_P0086582 Cln3 protein_coding protein_coding MGP_AJ_T0086583.1 MGP_AJ_G0032969.1 mouse_genomes_project 7 127402236 127405182 - MGP_AJ_P0086583 Cln3 protein_coding protein_coding MGP_AJ_T0086584.1 MGP_AJ_G0032969.1 mouse_genomes_project 7 127402290 127404158 - MGP_AJ_P0086584 Cln3 protein_coding protein_coding MGP_AJ_T0086585.1 MGP_AJ_G0032969.1 mouse_genomes_project 7 127403925 127405393 - Cln3 protein_coding processed_transcript MGP_AJ_T0011692.1 MGP_AJ_G0009814.1 mouse_genomes_project 7 95386420 95386714 + Gm23884 misc_RNA misc_RNA MGP_AJ_T0086377.1 MGP_AJ_G0032935.1 mouse_genomes_project 7 122932439 122949373 + MGP_AJ_P0086377 Dctn5 protein_coding protein_coding MGP_AJ_T0086378.1 MGP_AJ_G0032935.1 mouse_genomes_project 7 122932452 122949373 + Dctn5 protein_coding retained_intron MGP_AJ_T0086379.1 MGP_AJ_G0032935.1 mouse_genomes_project 7 122932470 122934497 + MGP_AJ_P0086379 Dctn5 protein_coding nonsense_mediated_decay MGP_AJ_T0086380.1 MGP_AJ_G0032935.1 mouse_genomes_project 7 122943259 122948910 + MGP_AJ_P0086380 Dctn5 protein_coding nonsense_mediated_decay MGP_AJ_T0086080.1 MGP_AJ_G0032869.1 mouse_genomes_project 7 115451914 115500522 + MGP_AJ_P0086080 Insc protein_coding protein_coding MGP_AJ_T0086081.1 MGP_AJ_G0032869.1 mouse_genomes_project 7 115453960 115500800 + MGP_AJ_P0086081 Insc protein_coding protein_coding MGP_AJ_T0086082.1 MGP_AJ_G0032869.1 mouse_genomes_project 7 115453986 115560212 + MGP_AJ_P0086082 Insc protein_coding protein_coding MGP_AJ_T0086083.1 MGP_AJ_G0032869.1 mouse_genomes_project 7 115461941 115478141 + Insc protein_coding retained_intron MGP_AJ_T0086084.1 MGP_AJ_G0032869.1 mouse_genomes_project 7 115477531 115560215 + MGP_AJ_P0086084 Insc protein_coding protein_coding MGP_AJ_T0086085.1 MGP_AJ_G0032869.1 mouse_genomes_project 7 115477569 115500559 + MGP_AJ_P0086085 Insc protein_coding protein_coding MGP_AJ_T0086086.1 MGP_AJ_G0032869.1 mouse_genomes_project 7 115480114 115500695 + Insc protein_coding processed_transcript MGP_AJ_T0086087.1 MGP_AJ_G0032869.1 mouse_genomes_project 7 115501556 115560212 + Insc protein_coding retained_intron MGP_AJ_T0086088.1 MGP_AJ_G0032869.1 mouse_genomes_project 7 115503471 115539028 + MGP_AJ_P0086088 Insc protein_coding protein_coding MGP_AJ_T0010830.1 MGP_AJ_G0008952.1 mouse_genomes_project 7 519894 519980 + Mir3572 miRNA miRNA MGP_AJ_T0087424.1 MGP_AJ_G0033136.1 mouse_genomes_project 7 140850990 140879749 + MGP_AJ_P0087424 Kndc1 protein_coding protein_coding MGP_AJ_T0087425.1 MGP_AJ_G0033136.1 mouse_genomes_project 7 140850990 140897525 + MGP_AJ_P0087425 Kndc1 protein_coding protein_coding MGP_AJ_T0087426.1 MGP_AJ_G0033136.1 mouse_genomes_project 7 140851133 140870476 + MGP_AJ_P0087426 Kndc1 protein_coding protein_coding MGP_AJ_T0087427.1 MGP_AJ_G0033136.1 mouse_genomes_project 7 140879524 140897525 + Kndc1 protein_coding retained_intron MGP_AJ_T0008884.1 MGP_AJ_G0007172.1 mouse_genomes_project 7 60982600 61175340 - lincRNA lincRNA MGP_AJ_T0082603.1 MGP_AJ_G0031897.1 mouse_genomes_project 7 25620227 25674318 + MGP_AJ_P0082603 Akt2 protein_coding protein_coding MGP_AJ_T0082604.1 MGP_AJ_G0031897.1 mouse_genomes_project 7 25620414 25672942 + MGP_AJ_P0082604 Akt2 protein_coding protein_coding MGP_AJ_T0082605.1 MGP_AJ_G0031897.1 mouse_genomes_project 7 25621036 25660628 + MGP_AJ_P0082605 Akt2 protein_coding protein_coding MGP_AJ_T0082606.1 MGP_AJ_G0031897.1 mouse_genomes_project 7 25621126 25664886 + MGP_AJ_P0082606 Akt2 protein_coding protein_coding MGP_AJ_T0082607.1 MGP_AJ_G0031897.1 mouse_genomes_project 7 25622215 25646954 + Akt2 protein_coding processed_transcript MGP_AJ_T0082608.1 MGP_AJ_G0031897.1 mouse_genomes_project 7 25625495 25650012 + MGP_AJ_P0082608 Akt2 protein_coding protein_coding MGP_AJ_T0082609.1 MGP_AJ_G0031897.1 mouse_genomes_project 7 25634414 25660652 + MGP_AJ_P0082609 Akt2 protein_coding protein_coding MGP_AJ_T0082610.1 MGP_AJ_G0031897.1 mouse_genomes_project 7 25634434 25672940 + MGP_AJ_P0082610 Akt2 protein_coding protein_coding MGP_AJ_T0082611.1 MGP_AJ_G0031897.1 mouse_genomes_project 7 25634475 25672945 + MGP_AJ_P0082611 Akt2 protein_coding protein_coding MGP_AJ_T0082612.1 MGP_AJ_G0031897.1 mouse_genomes_project 7 25636353 25664866 + MGP_AJ_P0082612 Akt2 protein_coding protein_coding MGP_AJ_T0082613.1 MGP_AJ_G0031897.1 mouse_genomes_project 7 25636609 25650065 + MGP_AJ_P0082613 Akt2 protein_coding protein_coding MGP_AJ_T0082614.1 MGP_AJ_G0031897.1 mouse_genomes_project 7 25637267 25671288 + MGP_AJ_P0082614 Akt2 protein_coding protein_coding MGP_AJ_T0082615.1 MGP_AJ_G0031897.1 mouse_genomes_project 7 25660307 25666427 + Akt2 protein_coding retained_intron MGP_AJ_T0082616.1 MGP_AJ_G0031897.1 mouse_genomes_project 7 25669169 25670561 + Akt2 protein_coding retained_intron MGP_AJ_T0083995.1 MGP_AJ_G0032233.1 mouse_genomes_project 7 45295655 45315878 + MGP_AJ_P0083995 Tmem143 protein_coding protein_coding MGP_AJ_T0083996.1 MGP_AJ_G0032233.1 mouse_genomes_project 7 45295795 45315878 + MGP_AJ_P0083996 Tmem143 protein_coding nonsense_mediated_decay MGP_AJ_T0083997.1 MGP_AJ_G0032233.1 mouse_genomes_project 7 45295815 45315874 + MGP_AJ_P0083997 Tmem143 protein_coding protein_coding MGP_AJ_T0083998.1 MGP_AJ_G0032233.1 mouse_genomes_project 7 45296134 45300864 + Tmem143 protein_coding retained_intron MGP_AJ_T0083999.1 MGP_AJ_G0032233.1 mouse_genomes_project 7 45296137 45306690 + Tmem143 protein_coding processed_transcript MGP_AJ_T0084000.1 MGP_AJ_G0032233.1 mouse_genomes_project 7 45296143 45305937 + Tmem143 protein_coding retained_intron MGP_AJ_T0084001.1 MGP_AJ_G0032233.1 mouse_genomes_project 7 45296143 45307997 + MGP_AJ_P0084001 Tmem143 protein_coding protein_coding MGP_AJ_T0084002.1 MGP_AJ_G0032233.1 mouse_genomes_project 7 45307334 45307939 + Tmem143 protein_coding processed_transcript MGP_AJ_T0084003.1 MGP_AJ_G0032233.1 mouse_genomes_project 7 45314465 45315440 + Tmem143 protein_coding processed_transcript MGP_AJ_T0005152.1 MGP_AJ_G0004389.1 mouse_genomes_project 7 16632955 16640687 - Mypopos antisense antisense MGP_AJ_T0005153.1 MGP_AJ_G0004389.1 mouse_genomes_project 7 16633274 16640714 - Mypopos antisense antisense MGP_AJ_T0005154.1 MGP_AJ_G0004389.1 mouse_genomes_project 7 16634467 16636786 - Mypopos antisense antisense MGP_AJ_T0005155.1 MGP_AJ_G0004389.1 mouse_genomes_project 7 16636814 16640698 - Mypopos antisense antisense MGP_AJ_T0101440.1 MGP_AJ_G0039406.1 mouse_genomes_project 7 110161768 110161900 + Snora3 snoRNA snoRNA MGP_AJ_T0010886.1 MGP_AJ_G0009008.1 mouse_genomes_project 7 61753363 61753458 - Mir344 miRNA miRNA MGP_AJ_T0100136.1 MGP_AJ_G0038102.1 mouse_genomes_project 7 14434339 14434446 - Gm25815 snRNA snRNA MGP_AJ_T0005307.1 MGP_AJ_G0004501.1 mouse_genomes_project 7 142613950 142617632 - Gm16982 antisense antisense MGP_AJ_T0085954.1 MGP_AJ_G0032843.1 mouse_genomes_project 7 111444261 111488323 + MGP_AJ_P0085954 Ampd3 protein_coding protein_coding MGP_AJ_T0085955.1 MGP_AJ_G0032843.1 mouse_genomes_project 7 111444366 111467581 + Ampd3 protein_coding processed_transcript MGP_AJ_T0085956.1 MGP_AJ_G0032843.1 mouse_genomes_project 7 111448571 111488809 + MGP_AJ_P0085956 Ampd3 protein_coding protein_coding MGP_AJ_T0085957.1 MGP_AJ_G0032843.1 mouse_genomes_project 7 111448755 111471048 + Ampd3 protein_coding retained_intron MGP_AJ_T0085958.1 MGP_AJ_G0032843.1 mouse_genomes_project 7 111449607 111465104 + MGP_AJ_P0085958 Ampd3 protein_coding protein_coding MGP_AJ_T0085959.1 MGP_AJ_G0032843.1 mouse_genomes_project 7 111450179 111465026 + MGP_AJ_P0085959 Ampd3 protein_coding protein_coding MGP_AJ_T0085960.1 MGP_AJ_G0032843.1 mouse_genomes_project 7 111453649 111467626 + MGP_AJ_P0085960 Ampd3 protein_coding protein_coding MGP_AJ_T0015875.1 MGP_AJ_G0013970.1 mouse_genomes_project 7 85333104 85333750 - processed_pseudogene processed_pseudogene MGP_AJ_T0005164.1 MGP_AJ_G0004398.1 mouse_genomes_project 7 23065483 23067046 + 4933430L12Rik antisense antisense MGP_AJ_T0010890.1 MGP_AJ_G0009012.1 mouse_genomes_project 7 61957387 61957475 - Gm24923 miRNA miRNA MGP_AJ_T0015879.1 MGP_AJ_G0013974.1 mouse_genomes_project 7 88667843 88668399 - processed_pseudogene processed_pseudogene MGP_AJ_T0081629.1 MGP_AJ_G0031597.1 mouse_genomes_project 7 7362580 7364083 - MGP_AJ_P0081629 Vmn1r66 protein_coding protein_coding MGP_AJ_T0010884.1 MGP_AJ_G0009006.1 mouse_genomes_project 7 61665353 61665416 - Mir344b miRNA miRNA MGP_AJ_T0102774.1 MGP_AJ_G0040515.1 mouse_genomes_project 7 11393545 11399092 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0102742.1 MGP_AJ_G0040483.1 mouse_genomes_project 7 1120592 1121430 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0087551.1 MGP_AJ_G0033184.1 mouse_genomes_project 7 141932858 141934135 - MGP_AJ_P0087551 Ifitm5 protein_coding protein_coding MGP_AJ_T0009044.1 MGP_AJ_G0007277.1 mouse_genomes_project 7 129458374 129460794 - Gm45121 lincRNA lincRNA MGP_AJ_T0010909.1 MGP_AJ_G0009031.1 mouse_genomes_project 7 102223931 102224027 + Gm22655 miRNA miRNA MGP_AJ_T0002264.1 MGP_AJ_G0002175.1 mouse_genomes_project 7 75992276 75994926 + TEC TEC MGP_AJ_T0005293.1 MGP_AJ_G0004490.1 mouse_genomes_project 7 128456071 128456617 - 1700120K04Rik antisense antisense MGP_AJ_T0083347.1 MGP_AJ_G0032068.1 mouse_genomes_project 7 33849656 33891188 + MGP_AJ_P0083347 Cep89 protein_coding nonsense_mediated_decay MGP_AJ_T0083348.1 MGP_AJ_G0032068.1 mouse_genomes_project 7 33849676 33891190 + MGP_AJ_P0083348 Cep89 protein_coding protein_coding MGP_AJ_T0083349.1 MGP_AJ_G0032068.1 mouse_genomes_project 7 33849728 33863593 + Cep89 protein_coding retained_intron MGP_AJ_T0083350.1 MGP_AJ_G0032068.1 mouse_genomes_project 7 33849737 33862247 + Cep89 protein_coding processed_transcript MGP_AJ_T0083351.1 MGP_AJ_G0032068.1 mouse_genomes_project 7 33849751 33862230 + MGP_AJ_P0083351 Cep89 protein_coding nonsense_mediated_decay MGP_AJ_T0083352.1 MGP_AJ_G0032068.1 mouse_genomes_project 7 33849789 33891193 + MGP_AJ_P0083352 Cep89 protein_coding unknown_likely_coding MGP_AJ_T0083353.1 MGP_AJ_G0032068.1 mouse_genomes_project 7 33869106 33871035 + Cep89 protein_coding processed_transcript MGP_AJ_T0083354.1 MGP_AJ_G0032068.1 mouse_genomes_project 7 33869199 33873971 + Cep89 protein_coding retained_intron MGP_AJ_T0083355.1 MGP_AJ_G0032068.1 mouse_genomes_project 7 33870568 33881024 + MGP_AJ_P0083355 Cep89 protein_coding nonsense_mediated_decay MGP_AJ_T0083356.1 MGP_AJ_G0032068.1 mouse_genomes_project 7 33871055 33880525 + Cep89 protein_coding processed_transcript MGP_AJ_T0083357.1 MGP_AJ_G0032068.1 mouse_genomes_project 7 33880024 33885431 + Cep89 protein_coding retained_intron MGP_AJ_T0083358.1 MGP_AJ_G0032068.1 mouse_genomes_project 7 33881131 33891182 + MGP_AJ_P0083358 Cep89 protein_coding protein_coding MGP_AJ_T0082868.1 MGP_AJ_G0031963.1 mouse_genomes_project 7 27961132 27972449 + MGP_AJ_P0082868 Zfp84 protein_coding protein_coding MGP_AJ_T0085887.1 MGP_AJ_G0032825.1 mouse_genomes_project 7 110089647 110134892 - MGP_AJ_P0085887 Trim66 protein_coding protein_coding MGP_AJ_T0085888.1 MGP_AJ_G0032825.1 mouse_genomes_project 7 110094132 110149757 - MGP_AJ_P0085888 Trim66 protein_coding protein_coding MGP_AJ_T0085889.1 MGP_AJ_G0032825.1 mouse_genomes_project 7 110094132 110149757 - MGP_AJ_P0085889 Trim66 protein_coding protein_coding MGP_AJ_T0085890.1 MGP_AJ_G0032825.1 mouse_genomes_project 7 110110879 110116313 - Trim66 protein_coding processed_transcript MGP_AJ_T0082726.1 MGP_AJ_G0031933.1 mouse_genomes_project 7 26860845 26884678 + MGP_AJ_P0082726 Fbxo17 protein_coding protein_coding MGP_AJ_T0082727.1 MGP_AJ_G0031933.1 mouse_genomes_project 7 26860873 26884672 + MGP_AJ_P0082727 Fbxo17 protein_coding protein_coding MGP_AJ_T0082728.1 MGP_AJ_G0031933.1 mouse_genomes_project 7 26860897 26871730 + Fbxo17 protein_coding retained_intron MGP_AJ_T0082729.1 MGP_AJ_G0031933.1 mouse_genomes_project 7 26860914 26884678 + MGP_AJ_P0082729 Fbxo17 protein_coding protein_coding MGP_AJ_T0082730.1 MGP_AJ_G0031933.1 mouse_genomes_project 7 26879057 26884016 + MGP_AJ_P0082730 Fbxo17 protein_coding protein_coding MGP_AJ_T0086222.1 MGP_AJ_G0032894.1 mouse_genomes_project 7 120216788 120247873 - MGP_AJ_P0086222 Pdilt protein_coding protein_coding MGP_AJ_T0084284.1 MGP_AJ_G0032312.1 mouse_genomes_project 7 63791397 63795080 + MGP_AJ_P0084284 E030018B13Rik protein_coding protein_coding MGP_AJ_T0008831.1 MGP_AJ_G0007130.1 mouse_genomes_project 7 27235905 27246185 + Gm26604 lincRNA lincRNA MGP_AJ_T0005229.1 MGP_AJ_G0004446.1 mouse_genomes_project 7 79020198 79056022 - Gm26633 antisense antisense MGP_AJ_T0085524.1 MGP_AJ_G0032605.1 mouse_genomes_project 7 103202998 103203949 - MGP_AJ_P0085524 Olfr566 protein_coding protein_coding MGP_AJ_T0086181.1 MGP_AJ_G0032884.1 mouse_genomes_project 7 119340450 119419850 + MGP_AJ_P0086181 Tmc5 protein_coding protein_coding MGP_AJ_T0086182.1 MGP_AJ_G0032884.1 mouse_genomes_project 7 119340450 119419851 + MGP_AJ_P0086182 Tmc5 protein_coding protein_coding MGP_AJ_T0086183.1 MGP_AJ_G0032884.1 mouse_genomes_project 7 119343306 119419851 + MGP_AJ_P0086183 Tmc5 protein_coding protein_coding MGP_AJ_T0086184.1 MGP_AJ_G0032884.1 mouse_genomes_project 7 119377515 119419851 + MGP_AJ_P0086184 Tmc5 protein_coding protein_coding MGP_AJ_T0087498.1 MGP_AJ_G0033169.1 mouse_genomes_project 7 141660679 141661714 + MGP_AJ_P0087498 Olfr45 protein_coding protein_coding MGP_AJ_T0085545.1 MGP_AJ_G0032624.1 mouse_genomes_project 7 103592899 103593883 + MGP_AJ_P0085545 Olfr593 protein_coding protein_coding MGP_AJ_T0081853.1 MGP_AJ_G0031682.1 mouse_genomes_project 7 13925968 13928679 + MGP_AJ_P0081853 Tmem160 protein_coding protein_coding MGP_AJ_T0085507.1 MGP_AJ_G0032590.1 mouse_genomes_project 7 102916471 102924004 - MGP_AJ_P0085507 Trim21 protein_coding protein_coding MGP_AJ_T0085508.1 MGP_AJ_G0032590.1 mouse_genomes_project 7 102916471 102924004 - MGP_AJ_P0085508 Trim21 protein_coding protein_coding MGP_AJ_T0015916.1 MGP_AJ_G0014011.1 mouse_genomes_project 7 114015040 114015442 + processed_pseudogene processed_pseudogene MGP_AJ_T0008998.1 MGP_AJ_G0007249.1 mouse_genomes_project 7 115561163 115564391 - Gm45017 lincRNA lincRNA MGP_AJ_T0085412.1 MGP_AJ_G0032567.1 mouse_genomes_project 7 102224072 102242320 + MGP_AJ_P0085412 Anapc15 protein_coding protein_coding MGP_AJ_T0085413.1 MGP_AJ_G0032567.1 mouse_genomes_project 7 102238806 102240802 + Anapc15 protein_coding processed_transcript MGP_AJ_T0085414.1 MGP_AJ_G0032567.1 mouse_genomes_project 7 102239116 102242317 + MGP_AJ_P0085414 Anapc15 protein_coding protein_coding MGP_AJ_T0085415.1 MGP_AJ_G0032567.1 mouse_genomes_project 7 102239184 102241004 + Anapc15 protein_coding retained_intron MGP_AJ_T0085416.1 MGP_AJ_G0032567.1 mouse_genomes_project 7 102239192 102242257 + MGP_AJ_P0085416 Anapc15 protein_coding protein_coding MGP_AJ_T0085417.1 MGP_AJ_G0032567.1 mouse_genomes_project 7 102239193 102244416 + MGP_AJ_P0085417 Anapc15 protein_coding protein_coding MGP_AJ_T0085418.1 MGP_AJ_G0032567.1 mouse_genomes_project 7 102239204 102242315 + Anapc15 protein_coding retained_intron MGP_AJ_T0085419.1 MGP_AJ_G0032567.1 mouse_genomes_project 7 102239639 102240805 + Anapc15 protein_coding processed_transcript MGP_AJ_T0085420.1 MGP_AJ_G0032567.1 mouse_genomes_project 7 102239737 102241819 + MGP_AJ_P0085420 Anapc15 protein_coding protein_coding MGP_AJ_T0085421.1 MGP_AJ_G0032567.1 mouse_genomes_project 7 102240164 102241355 + Anapc15 protein_coding retained_intron MGP_AJ_T0085422.1 MGP_AJ_G0032567.1 mouse_genomes_project 7 102240508 102244622 + MGP_AJ_P0085422 Anapc15 protein_coding protein_coding MGP_AJ_T0085423.1 MGP_AJ_G0032567.1 mouse_genomes_project 7 102240571 102244416 + MGP_AJ_P0085423 Anapc15 protein_coding protein_coding MGP_AJ_T0085425.1 MGP_AJ_G0032567.1 mouse_genomes_project 7 102241768 102242321 + Anapc15 protein_coding processed_transcript MGP_AJ_T0082410.1 MGP_AJ_G0031849.1 mouse_genomes_project 7 23479963 23486101 + MGP_AJ_P0082410 Atp5sl protein_coding protein_coding MGP_AJ_T0082411.1 MGP_AJ_G0031849.1 mouse_genomes_project 7 23479973 23481089 + Atp5sl protein_coding retained_intron MGP_AJ_T0082412.1 MGP_AJ_G0031849.1 mouse_genomes_project 7 23480042 23486098 + MGP_AJ_P0082412 Atp5sl protein_coding protein_coding MGP_AJ_T0082413.1 MGP_AJ_G0031849.1 mouse_genomes_project 7 23481086 23482956 + Atp5sl protein_coding retained_intron MGP_AJ_T0082414.1 MGP_AJ_G0031849.1 mouse_genomes_project 7 23481445 23484632 + MGP_AJ_P0082414 Atp5sl protein_coding nonsense_mediated_decay MGP_AJ_T0082415.1 MGP_AJ_G0031849.1 mouse_genomes_project 7 23481452 23482553 + Atp5sl protein_coding processed_transcript MGP_AJ_T0083505.1 MGP_AJ_G0032105.1 mouse_genomes_project 7 42554550 42555802 + MGP_AJ_P0083505 protein_coding protein_coding MGP_AJ_T0083080.1 MGP_AJ_G0032010.1 mouse_genomes_project 7 28808564 28817980 - MGP_AJ_P0083080 Upk1a protein_coding protein_coding MGP_AJ_T0005269.1 MGP_AJ_G0004473.1 mouse_genomes_project 7 114228021 114254486 - Far1os antisense antisense MGP_AJ_T0005270.1 MGP_AJ_G0004473.1 mouse_genomes_project 7 114236162 114263119 - Far1os antisense antisense MGP_AJ_T0008819.1 MGP_AJ_G0007119.1 mouse_genomes_project 7 16941210 16943721 - Gm26802 lincRNA lincRNA MGP_AJ_T0082036.1 MGP_AJ_G0031742.1 mouse_genomes_project 7 16870977 16890549 + MGP_AJ_P0082036 Opa3 protein_coding protein_coding MGP_AJ_T0082037.1 MGP_AJ_G0031742.1 mouse_genomes_project 7 16871026 16871756 + Opa3 protein_coding retained_intron MGP_AJ_T0082038.1 MGP_AJ_G0031742.1 mouse_genomes_project 7 16871026 16899561 + MGP_AJ_P0082038 Opa3 protein_coding protein_coding MGP_AJ_T0002304.1 MGP_AJ_G0002215.1 mouse_genomes_project 7 126133941 126135101 + TEC TEC MGP_AJ_T0082909.1 MGP_AJ_G0031976.1 mouse_genomes_project 7 28282905 28297270 - MGP_AJ_P0082909 Zfp566 protein_coding protein_coding MGP_AJ_T0082910.1 MGP_AJ_G0031976.1 mouse_genomes_project 7 28286274 28297206 - Zfp566 protein_coding retained_intron MGP_AJ_T0087513.1 MGP_AJ_G0033177.1 mouse_genomes_project 7 141837471 141840471 - MGP_AJ_P0087513 Bet1l protein_coding protein_coding MGP_AJ_T0083320.1 MGP_AJ_G0032061.1 mouse_genomes_project 7 33492528 33502679 - MGP_AJ_P0083320 Cebpg protein_coding protein_coding MGP_AJ_T0083321.1 MGP_AJ_G0032061.1 mouse_genomes_project 7 33496002 33497612 - Cebpg protein_coding retained_intron MGP_AJ_T0083322.1 MGP_AJ_G0032061.1 mouse_genomes_project 7 33496421 33502046 - MGP_AJ_P0083322 Cebpg protein_coding protein_coding MGP_AJ_T0083323.1 MGP_AJ_G0032061.1 mouse_genomes_project 7 33496971 33502089 - Cebpg protein_coding processed_transcript MGP_AJ_T0002226.1 MGP_AJ_G0002138.1 mouse_genomes_project 7 49109419 49112999 + TEC TEC MGP_AJ_T0002228.1 MGP_AJ_G0002140.1 mouse_genomes_project 7 54845890 54847428 + TEC TEC MGP_AJ_T0086531.1 MGP_AJ_G0032962.1 mouse_genomes_project 7 127248211 127265648 + Rabep2 protein_coding retained_intron MGP_AJ_T0086532.1 MGP_AJ_G0032962.1 mouse_genomes_project 7 127248551 127255439 + Rabep2 protein_coding retained_intron MGP_AJ_T0086533.1 MGP_AJ_G0032962.1 mouse_genomes_project 7 127248584 127265656 + MGP_AJ_P0086533 Rabep2 protein_coding protein_coding MGP_AJ_T0086534.1 MGP_AJ_G0032962.1 mouse_genomes_project 7 127248834 127257724 + MGP_AJ_P0086534 Rabep2 protein_coding nonsense_mediated_decay MGP_AJ_T0086535.1 MGP_AJ_G0032962.1 mouse_genomes_project 7 127248880 127257715 + MGP_AJ_P0086535 Rabep2 protein_coding nonsense_mediated_decay MGP_AJ_T0086536.1 MGP_AJ_G0032962.1 mouse_genomes_project 7 127257483 127258047 + Rabep2 protein_coding retained_intron MGP_AJ_T0086537.1 MGP_AJ_G0032962.1 mouse_genomes_project 7 127259600 127264431 + Rabep2 protein_coding retained_intron MGP_AJ_T0086538.1 MGP_AJ_G0032962.1 mouse_genomes_project 7 127264546 127268992 + Rabep2 protein_coding retained_intron MGP_AJ_T0002300.1 MGP_AJ_G0002211.1 mouse_genomes_project 7 123400694 123402029 + TEC TEC MGP_AJ_T0083785.1 MGP_AJ_G0032176.1 mouse_genomes_project 7 44433287 44449368 + MGP_AJ_P0083785 Nosip protein_coding protein_coding MGP_AJ_T0083786.1 MGP_AJ_G0032176.1 mouse_genomes_project 7 44433287 44449368 + MGP_AJ_P0083786 Nosip protein_coding protein_coding MGP_AJ_T0081906.1 MGP_AJ_G0031694.1 mouse_genomes_project 7 14387670 14392086 + MGP_AJ_P0081906 Ptgir protein_coding protein_coding MGP_AJ_T0081907.1 MGP_AJ_G0031694.1 mouse_genomes_project 7 14387694 14392081 + MGP_AJ_P0081907 Ptgir protein_coding protein_coding MGP_AJ_T0085803.1 MGP_AJ_G0032762.1 mouse_genomes_project 7 107513704 107514386 - MGP_AJ_P0085803 protein_coding protein_coding MGP_AJ_T0084842.1 MGP_AJ_G0032413.1 mouse_genomes_project 7 81851863 81860657 + MGP_AJ_P0084842 Fam103a1 protein_coding protein_coding MGP_AJ_T0084843.1 MGP_AJ_G0032413.1 mouse_genomes_project 7 81851988 81856593 + MGP_AJ_P0084843 Fam103a1 protein_coding protein_coding MGP_AJ_T0085395.1 MGP_AJ_G0032566.1 mouse_genomes_project 7 102201540 102213829 - MGP_AJ_P0085395 Folr1 protein_coding protein_coding MGP_AJ_T0085396.1 MGP_AJ_G0032566.1 mouse_genomes_project 7 102201540 102210604 - MGP_AJ_P0085396 Folr1 protein_coding protein_coding MGP_AJ_T0085397.1 MGP_AJ_G0032566.1 mouse_genomes_project 7 102201540 102207350 - MGP_AJ_P0085397 Folr1 protein_coding protein_coding MGP_AJ_T0085398.1 MGP_AJ_G0032566.1 mouse_genomes_project 7 102201540 102213853 - MGP_AJ_P0085398 Folr1 protein_coding protein_coding MGP_AJ_T0085399.1 MGP_AJ_G0032566.1 mouse_genomes_project 7 102201540 102213934 - MGP_AJ_P0085399 Folr1 protein_coding protein_coding MGP_AJ_T0085400.1 MGP_AJ_G0032566.1 mouse_genomes_project 7 102201540 102213927 - MGP_AJ_P0085400 Folr1 protein_coding protein_coding MGP_AJ_T0085401.1 MGP_AJ_G0032566.1 mouse_genomes_project 7 102202313 102212697 - MGP_AJ_P0085401 Folr1 protein_coding protein_coding MGP_AJ_T0085402.1 MGP_AJ_G0032566.1 mouse_genomes_project 7 102202323 102213860 - MGP_AJ_P0085402 Folr1 protein_coding protein_coding MGP_AJ_T0085403.1 MGP_AJ_G0032566.1 mouse_genomes_project 7 102202382 102213932 - MGP_AJ_P0085403 Folr1 protein_coding protein_coding MGP_AJ_T0085404.1 MGP_AJ_G0032566.1 mouse_genomes_project 7 102202615 102212470 - MGP_AJ_P0085404 Folr1 protein_coding protein_coding MGP_AJ_T0085405.1 MGP_AJ_G0032566.1 mouse_genomes_project 7 102207127 102213934 - MGP_AJ_P0085405 Folr1 protein_coding protein_coding MGP_AJ_T0085406.1 MGP_AJ_G0032566.1 mouse_genomes_project 7 102207129 102212164 - MGP_AJ_P0085406 Folr1 protein_coding protein_coding MGP_AJ_T0085407.1 MGP_AJ_G0032566.1 mouse_genomes_project 7 102207132 102213933 - MGP_AJ_P0085407 Folr1 protein_coding protein_coding MGP_AJ_T0085408.1 MGP_AJ_G0032566.1 mouse_genomes_project 7 102207165 102211813 - MGP_AJ_P0085408 Folr1 protein_coding protein_coding MGP_AJ_T0085409.1 MGP_AJ_G0032566.1 mouse_genomes_project 7 102207204 102212468 - MGP_AJ_P0085409 Folr1 protein_coding protein_coding MGP_AJ_T0085410.1 MGP_AJ_G0032566.1 mouse_genomes_project 7 102207282 102213730 - MGP_AJ_P0085410 Folr1 protein_coding protein_coding MGP_AJ_T0085411.1 MGP_AJ_G0032566.1 mouse_genomes_project 7 102211610 102213247 - Folr1 protein_coding processed_transcript MGP_AJ_T0086483.1 MGP_AJ_G0032956.1 mouse_genomes_project 7 126912407 126962860 - MGP_AJ_P0086483 Xpo6 protein_coding unknown_likely_coding MGP_AJ_T0086484.1 MGP_AJ_G0032956.1 mouse_genomes_project 7 126914059 127014948 - MGP_AJ_P0086484 Xpo6 protein_coding protein_coding MGP_AJ_T0086485.1 MGP_AJ_G0032956.1 mouse_genomes_project 7 126914060 127014855 - MGP_AJ_P0086485 Xpo6 protein_coding protein_coding MGP_AJ_T0086486.1 MGP_AJ_G0032956.1 mouse_genomes_project 7 126914065 126922447 - Xpo6 protein_coding retained_intron MGP_AJ_T0086487.1 MGP_AJ_G0032956.1 mouse_genomes_project 7 126914065 126974009 - Xpo6 protein_coding processed_transcript MGP_AJ_T0086488.1 MGP_AJ_G0032956.1 mouse_genomes_project 7 126914065 126917204 - MGP_AJ_P0086488 Xpo6 protein_coding nonsense_mediated_decay MGP_AJ_T0086489.1 MGP_AJ_G0032956.1 mouse_genomes_project 7 126914078 126919562 - MGP_AJ_P0086489 Xpo6 protein_coding nonsense_mediated_decay MGP_AJ_T0086490.1 MGP_AJ_G0032956.1 mouse_genomes_project 7 126914413 126917417 - Xpo6 protein_coding retained_intron MGP_AJ_T0086491.1 MGP_AJ_G0032956.1 mouse_genomes_project 7 126914690 126919525 - MGP_AJ_P0086491 Xpo6 protein_coding nonsense_mediated_decay MGP_AJ_T0086492.1 MGP_AJ_G0032956.1 mouse_genomes_project 7 126917152 126926338 - MGP_AJ_P0086492 Xpo6 protein_coding nonsense_mediated_decay MGP_AJ_T0086493.1 MGP_AJ_G0032956.1 mouse_genomes_project 7 126920916 126926270 - MGP_AJ_P0086493 Xpo6 protein_coding protein_coding MGP_AJ_T0086494.1 MGP_AJ_G0032956.1 mouse_genomes_project 7 126926343 126954054 - MGP_AJ_P0086494 Xpo6 protein_coding nonsense_mediated_decay MGP_AJ_T0086495.1 MGP_AJ_G0032956.1 mouse_genomes_project 7 126931895 127014869 - Xpo6 protein_coding retained_intron MGP_AJ_T0086496.1 MGP_AJ_G0032956.1 mouse_genomes_project 7 126941653 126966369 - MGP_AJ_P0086496 Xpo6 protein_coding nonsense_mediated_decay MGP_AJ_T0086497.1 MGP_AJ_G0032956.1 mouse_genomes_project 7 126954034 126974150 - MGP_AJ_P0086497 Xpo6 protein_coding protein_coding MGP_AJ_T0086498.1 MGP_AJ_G0032956.1 mouse_genomes_project 7 126962629 126974158 - Xpo6 protein_coding processed_transcript MGP_AJ_T0086499.1 MGP_AJ_G0032956.1 mouse_genomes_project 7 126965021 127014789 - Xpo6 protein_coding processed_transcript MGP_AJ_T0086500.1 MGP_AJ_G0032956.1 mouse_genomes_project 7 126965590 127014348 - MGP_AJ_P0086500 Xpo6 protein_coding protein_coding MGP_AJ_T0086501.1 MGP_AJ_G0032956.1 mouse_genomes_project 7 126974145 127014375 - MGP_AJ_P0086501 Xpo6 protein_coding nonsense_mediated_decay MGP_AJ_T0086502.1 MGP_AJ_G0032956.1 mouse_genomes_project 7 126982497 126994734 - Xpo6 protein_coding processed_transcript MGP_AJ_T0086503.1 MGP_AJ_G0032956.1 mouse_genomes_project 7 126992870 127000027 - Xpo6 protein_coding retained_intron MGP_AJ_T0086455.1 MGP_AJ_G0032950.1 mouse_genomes_project 7 126282299 126306242 - MGP_AJ_P0086455 Nsmce1 protein_coding protein_coding MGP_AJ_T0086456.1 MGP_AJ_G0032950.1 mouse_genomes_project 7 126285771 126306045 - MGP_AJ_P0086456 Nsmce1 protein_coding protein_coding MGP_AJ_T0086457.1 MGP_AJ_G0032950.1 mouse_genomes_project 7 126285825 126293217 - Nsmce1 protein_coding processed_transcript MGP_AJ_T0087402.1 MGP_AJ_G0033132.1 mouse_genomes_project 7 140327783 140525565 + MGP_AJ_P0087402 Inpp5a protein_coding protein_coding MGP_AJ_T0087403.1 MGP_AJ_G0033132.1 mouse_genomes_project 7 140327784 140525565 + MGP_AJ_P0087403 Inpp5a protein_coding protein_coding MGP_AJ_T0087404.1 MGP_AJ_G0033132.1 mouse_genomes_project 7 140339156 140525138 + MGP_AJ_P0087404 Inpp5a protein_coding protein_coding MGP_AJ_T0087405.1 MGP_AJ_G0033132.1 mouse_genomes_project 7 140395341 140453679 + Inpp5a protein_coding processed_transcript MGP_AJ_T0087406.1 MGP_AJ_G0033132.1 mouse_genomes_project 7 140422699 140439002 + Inpp5a protein_coding processed_transcript MGP_AJ_T0087407.1 MGP_AJ_G0033132.1 mouse_genomes_project 7 140467448 140521122 + Inpp5a protein_coding processed_transcript MGP_AJ_T0085834.1 MGP_AJ_G0032786.1 mouse_genomes_project 7 108577110 108578043 + MGP_AJ_P0085834 Olfr476 protein_coding protein_coding MGP_AJ_T0084126.1 MGP_AJ_G0032276.1 mouse_genomes_project 7 48821275 48875772 + Nav2 protein_coding processed_transcript MGP_AJ_T0084127.1 MGP_AJ_G0032276.1 mouse_genomes_project 7 48871044 48879784 + Nav2 protein_coding retained_intron MGP_AJ_T0084128.1 MGP_AJ_G0032276.1 mouse_genomes_project 7 48871068 49521633 + MGP_AJ_P0084128 Nav2 protein_coding protein_coding MGP_AJ_T0084129.1 MGP_AJ_G0032276.1 mouse_genomes_project 7 49160045 49323079 + Nav2 protein_coding retained_intron MGP_AJ_T0084130.1 MGP_AJ_G0032276.1 mouse_genomes_project 7 49160045 49524899 + MGP_AJ_P0084130 Nav2 protein_coding protein_coding MGP_AJ_T0084131.1 MGP_AJ_G0032276.1 mouse_genomes_project 7 49160700 49524902 + MGP_AJ_P0084131 Nav2 protein_coding protein_coding MGP_AJ_T0084132.1 MGP_AJ_G0032276.1 mouse_genomes_project 7 49160701 49407016 + MGP_AJ_P0084132 Nav2 protein_coding nonsense_mediated_decay MGP_AJ_T0084133.1 MGP_AJ_G0032276.1 mouse_genomes_project 7 49160824 49524903 + MGP_AJ_P0084133 Nav2 protein_coding unknown_likely_coding MGP_AJ_T0084134.1 MGP_AJ_G0032276.1 mouse_genomes_project 7 49217891 49324842 + Nav2 protein_coding retained_intron MGP_AJ_T0084135.1 MGP_AJ_G0032276.1 mouse_genomes_project 7 49218005 49351245 + Nav2 protein_coding processed_transcript MGP_AJ_T0084136.1 MGP_AJ_G0032276.1 mouse_genomes_project 7 49218007 49219671 + Nav2 protein_coding retained_intron MGP_AJ_T0084137.1 MGP_AJ_G0032276.1 mouse_genomes_project 7 49279040 49368110 + Nav2 protein_coding retained_intron MGP_AJ_T0084138.1 MGP_AJ_G0032276.1 mouse_genomes_project 7 49364211 49377955 + Nav2 protein_coding processed_transcript MGP_AJ_T0084139.1 MGP_AJ_G0032276.1 mouse_genomes_project 7 49461686 49470502 + MGP_AJ_P0084139 Nav2 protein_coding protein_coding MGP_AJ_T0084140.1 MGP_AJ_G0032276.1 mouse_genomes_project 7 49467386 49470225 + Nav2 protein_coding retained_intron MGP_AJ_T0084141.1 MGP_AJ_G0032276.1 mouse_genomes_project 7 49489351 49490817 + Nav2 protein_coding retained_intron MGP_AJ_T0084142.1 MGP_AJ_G0032276.1 mouse_genomes_project 7 49499455 49501039 + Nav2 protein_coding retained_intron MGP_AJ_T0084143.1 MGP_AJ_G0032276.1 mouse_genomes_project 7 49501624 49504261 + Nav2 protein_coding retained_intron MGP_AJ_T0015885.1 MGP_AJ_G0013980.1 mouse_genomes_project 7 95674465 95675913 + processed_pseudogene processed_pseudogene MGP_AJ_T0086878.1 MGP_AJ_G0033024.1 mouse_genomes_project 7 128363639 128378650 + Srcap protein_coding retained_intron MGP_AJ_T0086879.1 MGP_AJ_G0033024.1 mouse_genomes_project 7 128363639 128381305 + MGP_AJ_P0086879 Srcap protein_coding protein_coding MGP_AJ_T0086880.1 MGP_AJ_G0033024.1 mouse_genomes_project 7 128363658 128374437 + MGP_AJ_P0086880 Srcap protein_coding protein_coding MGP_AJ_T0086881.1 MGP_AJ_G0033024.1 mouse_genomes_project 7 128363683 128376921 + MGP_AJ_P0086881 Srcap protein_coding protein_coding MGP_AJ_T0086882.1 MGP_AJ_G0033024.1 mouse_genomes_project 7 128363768 128367113 + Srcap protein_coding processed_transcript MGP_AJ_T0086883.1 MGP_AJ_G0033024.1 mouse_genomes_project 7 128363957 128367688 + Srcap protein_coding processed_transcript MGP_AJ_T0086884.1 MGP_AJ_G0033024.1 mouse_genomes_project 7 128364121 128391219 + MGP_AJ_P0086884 Srcap protein_coding protein_coding MGP_AJ_T0086885.1 MGP_AJ_G0033024.1 mouse_genomes_project 7 128364648 128388359 + Srcap protein_coding retained_intron MGP_AJ_T0086886.1 MGP_AJ_G0033024.1 mouse_genomes_project 7 128364648 128388359 + MGP_AJ_P0086886 Srcap protein_coding protein_coding MGP_AJ_T0086887.1 MGP_AJ_G0033024.1 mouse_genomes_project 7 128364674 128413267 + MGP_AJ_P0086887 Srcap protein_coding protein_coding MGP_AJ_T0086888.1 MGP_AJ_G0033024.1 mouse_genomes_project 7 128367684 128371586 + Srcap protein_coding retained_intron MGP_AJ_T0086889.1 MGP_AJ_G0033024.1 mouse_genomes_project 7 128367839 128412819 + MGP_AJ_P0086889 Srcap protein_coding protein_coding MGP_AJ_T0086890.1 MGP_AJ_G0033024.1 mouse_genomes_project 7 128367839 128412819 + MGP_AJ_P0086890 Srcap protein_coding protein_coding MGP_AJ_T0086892.1 MGP_AJ_G0033024.1 mouse_genomes_project 7 128385744 128387776 + Srcap protein_coding retained_intron MGP_AJ_T0085036.1 MGP_AJ_G0032485.1 mouse_genomes_project 7 92743005 92746576 + Ccdc90b protein_coding processed_transcript MGP_AJ_T0085037.1 MGP_AJ_G0032485.1 mouse_genomes_project 7 92743005 92762904 + MGP_AJ_P0085037 Ccdc90b protein_coding protein_coding MGP_AJ_T0085038.1 MGP_AJ_G0032485.1 mouse_genomes_project 7 92743005 92762904 + MGP_AJ_P0085038 Ccdc90b protein_coding protein_coding MGP_AJ_T0102907.1 MGP_AJ_G0040647.1 mouse_genomes_project 7 105000844 105001216 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0087111.1 MGP_AJ_G0033067.1 mouse_genomes_project 7 129473809 129535391 + Inpp5f protein_coding processed_transcript MGP_AJ_T0087112.1 MGP_AJ_G0033067.1 mouse_genomes_project 7 129473841 129561370 + MGP_AJ_P0087112 Inpp5f protein_coding protein_coding MGP_AJ_T0087113.1 MGP_AJ_G0033067.1 mouse_genomes_project 7 129522773 129541265 + Inpp5f protein_coding retained_intron MGP_AJ_T0087114.1 MGP_AJ_G0033067.1 mouse_genomes_project 7 129527460 129532350 + Inpp5f protein_coding processed_transcript MGP_AJ_T0087115.1 MGP_AJ_G0033067.1 mouse_genomes_project 7 129531469 129532555 + Inpp5f protein_coding retained_intron MGP_AJ_T0087116.1 MGP_AJ_G0033067.1 mouse_genomes_project 7 129543476 129561219 + Inpp5f protein_coding retained_intron MGP_AJ_T0087117.1 MGP_AJ_G0033067.1 mouse_genomes_project 7 129553433 129558596 + MGP_AJ_P0087117 Inpp5f protein_coding nonsense_mediated_decay MGP_AJ_T0087118.1 MGP_AJ_G0033067.1 mouse_genomes_project 7 129554186 129561221 + MGP_AJ_P0087118 Inpp5f protein_coding protein_coding MGP_AJ_T0083939.1 MGP_AJ_G0032216.1 mouse_genomes_project 7 45042707 45061697 - MGP_AJ_P0083939 Fut2 protein_coding protein_coding MGP_AJ_T0083950.1 MGP_AJ_G0032221.1 mouse_genomes_project 7 45105436 45113972 - MGP_AJ_P0083950 Sphk2 protein_coding protein_coding MGP_AJ_T0083951.1 MGP_AJ_G0032221.1 mouse_genomes_project 7 45106236 45113872 - MGP_AJ_P0083951 Sphk2 protein_coding protein_coding MGP_AJ_T0083952.1 MGP_AJ_G0032221.1 mouse_genomes_project 7 45106254 45111177 - MGP_AJ_P0083952 Sphk2 protein_coding protein_coding MGP_AJ_T0005182.1 MGP_AJ_G0004412.1 mouse_genomes_project 7 28928819 28946840 + Tmem147os antisense antisense MGP_AJ_T0005183.1 MGP_AJ_G0004412.1 mouse_genomes_project 7 28932258 28937254 + Tmem147os antisense antisense MGP_AJ_T0087347.1 MGP_AJ_G0033118.1 mouse_genomes_project 7 136621007 136647566 - MGP_AJ_P0087347 Mki67 protein_coding protein_coding MGP_AJ_T0081625.1 MGP_AJ_G0031593.1 mouse_genomes_project 7 4142956 4155177 + MGP_AJ_P0081625 Zfp418 protein_coding protein_coding MGP_AJ_T0086671.1 MGP_AJ_G0032983.1 mouse_genomes_project 7 127621195 127625229 - MGP_AJ_P0086671 Aldoa protein_coding protein_coding MGP_AJ_T0086672.1 MGP_AJ_G0032983.1 mouse_genomes_project 7 127621196 127626411 - MGP_AJ_P0086672 Aldoa protein_coding protein_coding MGP_AJ_T0086673.1 MGP_AJ_G0032983.1 mouse_genomes_project 7 127621197 127625116 - MGP_AJ_P0086673 Aldoa protein_coding protein_coding MGP_AJ_T0086674.1 MGP_AJ_G0032983.1 mouse_genomes_project 7 127621877 127624257 - Aldoa protein_coding processed_transcript MGP_AJ_T0086675.1 MGP_AJ_G0032983.1 mouse_genomes_project 7 127621914 127624282 - Aldoa protein_coding retained_intron MGP_AJ_T0086676.1 MGP_AJ_G0032983.1 mouse_genomes_project 7 127621914 127623726 - Aldoa protein_coding retained_intron MGP_AJ_T0086677.1 MGP_AJ_G0032983.1 mouse_genomes_project 7 127622004 127626010 - MGP_AJ_P0086677 Aldoa protein_coding protein_coding MGP_AJ_T0086678.1 MGP_AJ_G0032983.1 mouse_genomes_project 7 127622236 127624968 - MGP_AJ_P0086678 Aldoa protein_coding protein_coding MGP_AJ_T0086679.1 MGP_AJ_G0032983.1 mouse_genomes_project 7 127622447 127625145 - Aldoa protein_coding retained_intron MGP_AJ_T0086680.1 MGP_AJ_G0032983.1 mouse_genomes_project 7 127622633 127625084 - MGP_AJ_P0086680 Aldoa protein_coding protein_coding MGP_AJ_T0086681.1 MGP_AJ_G0032983.1 mouse_genomes_project 7 127622683 127626000 - MGP_AJ_P0086681 Aldoa protein_coding protein_coding MGP_AJ_T0086682.1 MGP_AJ_G0032983.1 mouse_genomes_project 7 127622805 127626715 - MGP_AJ_P0086682 Aldoa protein_coding protein_coding MGP_AJ_T0084966.1 MGP_AJ_G0032466.1 mouse_genomes_project 7 88487395 88533416 + MGP_AJ_P0084966 Ctsc protein_coding protein_coding MGP_AJ_T0084967.1 MGP_AJ_G0032466.1 mouse_genomes_project 7 88487444 88530549 + MGP_AJ_P0084967 Ctsc protein_coding protein_coding MGP_AJ_T0084968.1 MGP_AJ_G0032466.1 mouse_genomes_project 7 88487448 88497980 + Ctsc protein_coding retained_intron MGP_AJ_T0084969.1 MGP_AJ_G0032466.1 mouse_genomes_project 7 88487448 88507593 + Ctsc protein_coding retained_intron MGP_AJ_T0084970.1 MGP_AJ_G0032466.1 mouse_genomes_project 7 88513065 88524834 + Ctsc protein_coding retained_intron MGP_AJ_T0018378.1 MGP_AJ_G0015652.1 mouse_genomes_project 7 63769371 63772533 + Gm27252 processed_transcript lincRNA MGP_AJ_T0018379.1 MGP_AJ_G0015652.1 mouse_genomes_project 7 63770812 63772364 + Gm27252 processed_transcript antisense MGP_AJ_T0015805.1 MGP_AJ_G0013900.1 mouse_genomes_project 7 40479712 40480412 - processed_pseudogene processed_pseudogene MGP_AJ_T0101427.1 MGP_AJ_G0039393.1 mouse_genomes_project 7 69832761 69832890 - Gm24120 snoRNA snoRNA MGP_AJ_T0083782.1 MGP_AJ_G0032173.1 mouse_genomes_project 7 44387554 44392960 + MGP_AJ_P0083782 Rras protein_coding unknown_likely_coding MGP_AJ_T0084157.1 MGP_AJ_G0032281.1 mouse_genomes_project 7 49900116 50450127 + MGP_AJ_P0084157 Nell1 protein_coding protein_coding MGP_AJ_T0084158.1 MGP_AJ_G0032281.1 mouse_genomes_project 7 49900116 50758466 + MGP_AJ_P0084158 Nell1 protein_coding protein_coding MGP_AJ_T0084159.1 MGP_AJ_G0032281.1 mouse_genomes_project 7 49900321 50187166 + Nell1 protein_coding retained_intron MGP_AJ_T0084160.1 MGP_AJ_G0032281.1 mouse_genomes_project 7 49900586 50756566 + MGP_AJ_P0084160 Nell1 protein_coding protein_coding MGP_AJ_T0084161.1 MGP_AJ_G0032281.1 mouse_genomes_project 7 49900641 50593542 + MGP_AJ_P0084161 Nell1 protein_coding unknown_likely_coding MGP_AJ_T0084162.1 MGP_AJ_G0032281.1 mouse_genomes_project 7 50021424 50140291 + Nell1 protein_coding processed_transcript MGP_AJ_T0015818.1 MGP_AJ_G0013913.1 mouse_genomes_project 7 42521668 42522398 + processed_pseudogene processed_pseudogene MGP_AJ_T0086384.1 MGP_AJ_G0032937.1 mouse_genomes_project 7 122971618 122988085 - MGP_AJ_P0086384 Ern2 protein_coding nonsense_mediated_decay MGP_AJ_T0086385.1 MGP_AJ_G0032937.1 mouse_genomes_project 7 122971664 122988082 - MGP_AJ_P0086385 Ern2 protein_coding protein_coding MGP_AJ_T0086386.1 MGP_AJ_G0032937.1 mouse_genomes_project 7 122971783 122985857 - MGP_AJ_P0086386 Ern2 protein_coding unknown_likely_coding MGP_AJ_T0010939.1 MGP_AJ_G0009061.1 mouse_genomes_project 7 145005848 145005933 + Mir3105 miRNA miRNA MGP_AJ_T0083440.1 MGP_AJ_G0032083.1 mouse_genomes_project 7 36775336 36784765 - MGP_AJ_P0083440 Pop4 protein_coding protein_coding MGP_AJ_T0083441.1 MGP_AJ_G0032083.1 mouse_genomes_project 7 36777686 36784669 - MGP_AJ_P0083441 Pop4 protein_coding nonsense_mediated_decay MGP_AJ_T0083442.1 MGP_AJ_G0032083.1 mouse_genomes_project 7 36777756 36784711 - MGP_AJ_P0083442 Pop4 protein_coding nonsense_mediated_decay MGP_AJ_T0083443.1 MGP_AJ_G0032083.1 mouse_genomes_project 7 36779237 36784691 - Pop4 protein_coding retained_intron MGP_AJ_T0083444.1 MGP_AJ_G0032083.1 mouse_genomes_project 7 36779442 36784715 - MGP_AJ_P0083444 Pop4 protein_coding nonsense_mediated_decay MGP_AJ_T0083445.1 MGP_AJ_G0032083.1 mouse_genomes_project 7 36781722 36784622 - Pop4 protein_coding retained_intron MGP_AJ_T0086894.1 MGP_AJ_G0033026.1 mouse_genomes_project 7 128413436 128417318 + MGP_AJ_P0086894 Tmem265 protein_coding protein_coding MGP_AJ_T0086895.1 MGP_AJ_G0033026.1 mouse_genomes_project 7 128413625 128419015 + MGP_AJ_P0086895 Tmem265 protein_coding protein_coding MGP_AJ_T0084147.1 MGP_AJ_G0032279.1 mouse_genomes_project 7 49695269 49775097 + MGP_AJ_P0084147 Prmt3 protein_coding protein_coding MGP_AJ_T0084148.1 MGP_AJ_G0032279.1 mouse_genomes_project 7 49695269 49699437 + MGP_AJ_P0084148 Prmt3 protein_coding protein_coding MGP_AJ_T0084149.1 MGP_AJ_G0032279.1 mouse_genomes_project 7 49695360 49699094 + Prmt3 protein_coding processed_transcript MGP_AJ_T0084150.1 MGP_AJ_G0032279.1 mouse_genomes_project 7 49695360 49743697 + MGP_AJ_P0084150 Prmt3 protein_coding nonsense_mediated_decay MGP_AJ_T0084151.1 MGP_AJ_G0032279.1 mouse_genomes_project 7 49695362 49697567 + Prmt3 protein_coding processed_transcript MGP_AJ_T0084152.1 MGP_AJ_G0032279.1 mouse_genomes_project 7 49695467 49704246 + Prmt3 protein_coding processed_transcript MGP_AJ_T0084153.1 MGP_AJ_G0032279.1 mouse_genomes_project 7 49696807 49704276 + MGP_AJ_P0084153 Prmt3 protein_coding protein_coding MGP_AJ_T0084154.1 MGP_AJ_G0032279.1 mouse_genomes_project 7 49715177 49743893 + MGP_AJ_P0084154 Prmt3 protein_coding protein_coding MGP_AJ_T0084931.1 MGP_AJ_G0032442.1 mouse_genomes_project 7 86319441 86343816 - MGP_AJ_P0084931 Vmn2r75 protein_coding protein_coding MGP_AJ_T0102806.1 MGP_AJ_G0040546.1 mouse_genomes_project 7 32017533 32018890 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0082780.1 MGP_AJ_G0031945.1 mouse_genomes_project 7 27050088 27119543 - MGP_AJ_P0082780 Actn4 protein_coding protein_coding MGP_AJ_T0082781.1 MGP_AJ_G0031945.1 mouse_genomes_project 7 27050493 27064230 - Actn4 protein_coding processed_transcript MGP_AJ_T0082782.1 MGP_AJ_G0031945.1 mouse_genomes_project 7 27051072 27051693 - Actn4 protein_coding retained_intron MGP_AJ_T0082783.1 MGP_AJ_G0031945.1 mouse_genomes_project 7 27052482 27053872 - Actn4 protein_coding retained_intron MGP_AJ_T0082784.1 MGP_AJ_G0031945.1 mouse_genomes_project 7 27055460 27119426 - MGP_AJ_P0082784 Actn4 protein_coding protein_coding MGP_AJ_T0082785.1 MGP_AJ_G0031945.1 mouse_genomes_project 7 27058755 27064531 - Actn4 protein_coding processed_transcript MGP_AJ_T0082786.1 MGP_AJ_G0031945.1 mouse_genomes_project 7 27063858 27076070 - MGP_AJ_P0082786 Actn4 protein_coding protein_coding MGP_AJ_T0082787.1 MGP_AJ_G0031945.1 mouse_genomes_project 7 27070226 27107028 - MGP_AJ_P0082787 Actn4 protein_coding protein_coding MGP_AJ_T0087082.1 MGP_AJ_G0033063.1 mouse_genomes_project 7 129117322 129120790 - BC017158 protein_coding retained_intron MGP_AJ_T0087083.1 MGP_AJ_G0033063.1 mouse_genomes_project 7 129117322 129143720 - MGP_AJ_P0087083 BC017158 protein_coding protein_coding MGP_AJ_T0087084.1 MGP_AJ_G0033063.1 mouse_genomes_project 7 129118050 129143658 - BC017158 protein_coding retained_intron MGP_AJ_T0087085.1 MGP_AJ_G0033063.1 mouse_genomes_project 7 129118050 129143659 - BC017158 protein_coding retained_intron MGP_AJ_T0087086.1 MGP_AJ_G0033063.1 mouse_genomes_project 7 129118269 129143645 - MGP_AJ_P0087086 BC017158 protein_coding nonsense_mediated_decay MGP_AJ_T0087087.1 MGP_AJ_G0033063.1 mouse_genomes_project 7 129121906 129143125 - BC017158 protein_coding retained_intron MGP_AJ_T0087088.1 MGP_AJ_G0033063.1 mouse_genomes_project 7 129122242 129134147 - BC017158 protein_coding retained_intron MGP_AJ_T0087089.1 MGP_AJ_G0033063.1 mouse_genomes_project 7 129133406 129136057 - MGP_AJ_P0087089 BC017158 protein_coding protein_coding MGP_AJ_T0085070.1 MGP_AJ_G0032493.1 mouse_genomes_project 7 97302731 97511026 + MGP_AJ_P0085070 Gab2 protein_coding protein_coding MGP_AJ_T0085071.1 MGP_AJ_G0032493.1 mouse_genomes_project 7 97302929 97507116 + MGP_AJ_P0085071 Gab2 protein_coding protein_coding MGP_AJ_T0015829.1 MGP_AJ_G0013924.1 mouse_genomes_project 7 55197467 55199273 - processed_pseudogene processed_pseudogene MGP_AJ_T0083969.1 MGP_AJ_G0032226.1 mouse_genomes_project 7 45181918 45203030 + MGP_AJ_P0083969 Lmtk3 protein_coding protein_coding MGP_AJ_T0083970.1 MGP_AJ_G0032226.1 mouse_genomes_project 7 45181981 45189101 + MGP_AJ_P0083970 Lmtk3 protein_coding protein_coding MGP_AJ_T0083971.1 MGP_AJ_G0032226.1 mouse_genomes_project 7 45182127 45202995 + MGP_AJ_P0083971 Lmtk3 protein_coding protein_coding MGP_AJ_T0083972.1 MGP_AJ_G0032226.1 mouse_genomes_project 7 45183546 45203030 + MGP_AJ_P0083972 Lmtk3 protein_coding protein_coding MGP_AJ_T0083973.1 MGP_AJ_G0032226.1 mouse_genomes_project 7 45183553 45186115 + MGP_AJ_P0083973 Lmtk3 protein_coding protein_coding MGP_AJ_T0083974.1 MGP_AJ_G0032226.1 mouse_genomes_project 7 45183676 45185925 + Lmtk3 protein_coding retained_intron MGP_AJ_T0083975.1 MGP_AJ_G0032226.1 mouse_genomes_project 7 45184723 45190731 + MGP_AJ_P0083975 Lmtk3 protein_coding nonsense_mediated_decay MGP_AJ_T0083976.1 MGP_AJ_G0032226.1 mouse_genomes_project 7 45186070 45190770 + MGP_AJ_P0083976 Lmtk3 protein_coding nonsense_mediated_decay MGP_AJ_T0084921.1 MGP_AJ_G0032436.1 mouse_genomes_project 7 84689474 84710068 - MGP_AJ_P0084921 Fah protein_coding protein_coding MGP_AJ_T0084922.1 MGP_AJ_G0032436.1 mouse_genomes_project 7 84699835 84710966 - MGP_AJ_P0084922 Fah protein_coding protein_coding MGP_AJ_T0084923.1 MGP_AJ_G0032436.1 mouse_genomes_project 7 84705353 84706377 - Fah protein_coding processed_transcript MGP_AJ_T0084924.1 MGP_AJ_G0032436.1 mouse_genomes_project 7 84705897 84709970 - Fah protein_coding retained_intron MGP_AJ_T0005252.1 MGP_AJ_G0004461.1 mouse_genomes_project 7 96814530 96846928 - Gm15414 antisense antisense MGP_AJ_T0082826.1 MGP_AJ_G0031955.1 mouse_genomes_project 7 27391013 27403180 - MGP_AJ_P0082826 Kcnk6 protein_coding protein_coding MGP_AJ_T0084032.1 MGP_AJ_G0032243.1 mouse_genomes_project 7 45803028 45839720 + MGP_AJ_P0084032 Kcnc1 protein_coding protein_coding MGP_AJ_T0084033.1 MGP_AJ_G0032243.1 mouse_genomes_project 7 45804179 45844757 + MGP_AJ_P0084033 Kcnc1 protein_coding protein_coding MGP_AJ_T0084034.1 MGP_AJ_G0032243.1 mouse_genomes_project 7 45829057 45834187 + Kcnc1 protein_coding processed_transcript MGP_AJ_T0085526.1 MGP_AJ_G0032607.1 mouse_genomes_project 7 103235217 103236162 - MGP_AJ_P0085526 Olfr569 protein_coding protein_coding MGP_AJ_T0087627.1 MGP_AJ_G0033203.1 mouse_genomes_project 7 142270945 142271748 - MGP_AJ_P0087627 Sct protein_coding protein_coding MGP_AJ_T0087628.1 MGP_AJ_G0033203.1 mouse_genomes_project 7 142270968 142271746 - MGP_AJ_P0087628 Sct protein_coding protein_coding MGP_AJ_T0085791.1 MGP_AJ_G0032751.1 mouse_genomes_project 7 107316744 107319358 - MGP_AJ_P0085791 protein_coding protein_coding MGP_AJ_T0082161.1 MGP_AJ_G0031775.1 mouse_genomes_project 7 17504345 17513483 - MGP_AJ_P0082161 Ceacam16 protein_coding protein_coding MGP_AJ_T0083887.1 MGP_AJ_G0032206.1 mouse_genomes_project 7 44881937 44899490 - MGP_AJ_P0083887 Nucb1 protein_coding protein_coding MGP_AJ_T0083888.1 MGP_AJ_G0032206.1 mouse_genomes_project 7 44883235 44892348 - MGP_AJ_P0083888 Nucb1 protein_coding protein_coding MGP_AJ_T0083889.1 MGP_AJ_G0032206.1 mouse_genomes_project 7 44884116 44884553 - Nucb1 protein_coding processed_transcript MGP_AJ_T0083890.1 MGP_AJ_G0032206.1 mouse_genomes_project 7 44884490 44892342 - Nucb1 protein_coding processed_transcript MGP_AJ_T0083891.1 MGP_AJ_G0032206.1 mouse_genomes_project 7 44887228 44887900 - Nucb1 protein_coding retained_intron MGP_AJ_T0083892.1 MGP_AJ_G0032206.1 mouse_genomes_project 7 44887788 44899399 - MGP_AJ_P0083892 Nucb1 protein_coding protein_coding MGP_AJ_T0083893.1 MGP_AJ_G0032206.1 mouse_genomes_project 7 44890654 44899415 - MGP_AJ_P0083893 Nucb1 protein_coding protein_coding MGP_AJ_T0083894.1 MGP_AJ_G0032206.1 mouse_genomes_project 7 44892156 44899473 - Nucb1 protein_coding processed_transcript MGP_AJ_T0083895.1 MGP_AJ_G0032206.1 mouse_genomes_project 7 44896252 44899469 - Nucb1 protein_coding retained_intron MGP_AJ_T0086524.1 MGP_AJ_G0032960.1 mouse_genomes_project 7 127199570 127214646 - MGP_AJ_P0086524 Nfatc2ip protein_coding protein_coding MGP_AJ_T0086525.1 MGP_AJ_G0032960.1 mouse_genomes_project 7 127201594 127207418 - MGP_AJ_P0086525 Nfatc2ip protein_coding protein_coding MGP_AJ_T0085866.1 MGP_AJ_G0032817.1 mouse_genomes_project 7 109490626 109491680 - MGP_AJ_P0085866 Olfr517 protein_coding protein_coding MGP_AJ_T0082023.1 MGP_AJ_G0031739.1 mouse_genomes_project 7 16797975 16807962 - MGP_AJ_P0082023 Gipr protein_coding protein_coding MGP_AJ_T0082024.1 MGP_AJ_G0031739.1 mouse_genomes_project 7 16797978 16807962 - Gipr protein_coding retained_intron MGP_AJ_T0082025.1 MGP_AJ_G0031739.1 mouse_genomes_project 7 16804124 16807962 - MGP_AJ_P0082025 Gipr protein_coding nonsense_mediated_decay MGP_AJ_T0082026.1 MGP_AJ_G0031739.1 mouse_genomes_project 7 16804291 16806929 - Gipr protein_coding retained_intron MGP_AJ_T0087349.1 MGP_AJ_G0033120.1 mouse_genomes_project 7 138141919 138264713 - MGP_AJ_P0087349 Ebf3 protein_coding protein_coding MGP_AJ_T0087350.1 MGP_AJ_G0033120.1 mouse_genomes_project 7 138141919 138264713 - MGP_AJ_P0087350 Ebf3 protein_coding protein_coding MGP_AJ_T0087351.1 MGP_AJ_G0033120.1 mouse_genomes_project 7 138141919 138264713 - MGP_AJ_P0087351 Ebf3 protein_coding protein_coding MGP_AJ_T0087352.1 MGP_AJ_G0033120.1 mouse_genomes_project 7 138142944 138264682 - MGP_AJ_P0087352 Ebf3 protein_coding protein_coding MGP_AJ_T0084098.1 MGP_AJ_G0032258.1 mouse_genomes_project 7 46417624 46436420 - MGP_AJ_P0084098 Spty2d1 protein_coding protein_coding MGP_AJ_T0086701.1 MGP_AJ_G0032987.1 mouse_genomes_project 7 127676785 127687103 - MGP_AJ_P0086701 protein_coding protein_coding MGP_AJ_T0086702.1 MGP_AJ_G0032987.1 mouse_genomes_project 7 127677405 127687295 - MGP_AJ_P0086702 protein_coding protein_coding MGP_AJ_T0086703.1 MGP_AJ_G0032987.1 mouse_genomes_project 7 127678258 127688209 - protein_coding retained_intron MGP_AJ_T0086704.1 MGP_AJ_G0032987.1 mouse_genomes_project 7 127678405 127687692 - MGP_AJ_P0086704 protein_coding protein_coding MGP_AJ_T0086705.1 MGP_AJ_G0032987.1 mouse_genomes_project 7 127678507 127687564 - protein_coding processed_transcript MGP_AJ_T0086706.1 MGP_AJ_G0032987.1 mouse_genomes_project 7 127678595 127687617 - MGP_AJ_P0086706 protein_coding protein_coding MGP_AJ_T0086707.1 MGP_AJ_G0032987.1 mouse_genomes_project 7 127678643 127683562 - MGP_AJ_P0086707 protein_coding protein_coding MGP_AJ_T0086708.1 MGP_AJ_G0032987.1 mouse_genomes_project 7 127678720 127688193 - MGP_AJ_P0086708 protein_coding protein_coding MGP_AJ_T0086709.1 MGP_AJ_G0032987.1 mouse_genomes_project 7 127678755 127687615 - MGP_AJ_P0086709 protein_coding nonsense_mediated_decay MGP_AJ_T0086710.1 MGP_AJ_G0032987.1 mouse_genomes_project 7 127682032 127687701 - protein_coding retained_intron MGP_AJ_T0086711.1 MGP_AJ_G0032987.1 mouse_genomes_project 7 127683507 127687623 - protein_coding processed_transcript MGP_AJ_T0086712.1 MGP_AJ_G0032987.1 mouse_genomes_project 7 127683530 127687676 - MGP_AJ_P0086712 protein_coding protein_coding MGP_AJ_T0086713.1 MGP_AJ_G0032987.1 mouse_genomes_project 7 127683545 127687480 - MGP_AJ_P0086713 protein_coding protein_coding MGP_AJ_T0086714.1 MGP_AJ_G0032987.1 mouse_genomes_project 7 127687071 127687680 - protein_coding processed_transcript MGP_AJ_T0015832.1 MGP_AJ_G0013927.1 mouse_genomes_project 7 55862273 55862983 - processed_pseudogene processed_pseudogene MGP_AJ_T0008900.1 MGP_AJ_G0007185.1 mouse_genomes_project 7 68119881 68128647 - Gm16157 lincRNA lincRNA MGP_AJ_T0008901.1 MGP_AJ_G0007185.1 mouse_genomes_project 7 68120494 68133723 - Gm16157 lincRNA lincRNA MGP_AJ_T0018367.1 MGP_AJ_G0015648.1 mouse_genomes_project 7 55915384 55927432 + A230056P14Rik processed_transcript processed_transcript MGP_AJ_T0018368.1 MGP_AJ_G0015648.1 mouse_genomes_project 7 55915384 55935242 + A230056P14Rik processed_transcript processed_transcript MGP_AJ_T0081666.1 MGP_AJ_G0031624.1 mouse_genomes_project 7 10006206 10018731 - MGP_AJ_P0081666 Zscan18 protein_coding unknown_likely_coding MGP_AJ_T0083451.1 MGP_AJ_G0032086.1 mouse_genomes_project 7 40174845 40197678 - MGP_AJ_P0083451 AI987944 protein_coding protein_coding MGP_AJ_T0083452.1 MGP_AJ_G0032086.1 mouse_genomes_project 7 40174845 40197626 - MGP_AJ_P0083452 AI987944 protein_coding protein_coding MGP_AJ_T0083453.1 MGP_AJ_G0032086.1 mouse_genomes_project 7 40175712 40197745 - MGP_AJ_P0083453 AI987944 protein_coding protein_coding MGP_AJ_T0010857.1 MGP_AJ_G0008979.1 mouse_genomes_project 7 29288357 29288417 - Mir7050 miRNA miRNA MGP_AJ_T0005220.1 MGP_AJ_G0004439.1 mouse_genomes_project 7 65952140 66016464 - Gm26827 antisense antisense MGP_AJ_T0015786.1 MGP_AJ_G0013881.1 mouse_genomes_project 7 32598489 32598822 + processed_pseudogene processed_pseudogene MGP_AJ_T0100154.1 MGP_AJ_G0038120.1 mouse_genomes_project 7 63451849 63451950 + Gm22228 snRNA snRNA MGP_AJ_T0005244.1 MGP_AJ_G0004457.1 mouse_genomes_project 7 83748821 83750210 + 2310044K18Rik antisense antisense MGP_AJ_T0085851.1 MGP_AJ_G0032803.1 mouse_genomes_project 7 109093355 109094451 + MGP_AJ_P0085851 Olfr498 protein_coding protein_coding MGP_AJ_T0082497.1 MGP_AJ_G0031873.1 mouse_genomes_project 7 25032426 25039886 + MGP_AJ_P0082497 protein_coding protein_coding MGP_AJ_T0102739.1 MGP_AJ_G0040480.1 mouse_genomes_project 7 172209 173053 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0008983.1 MGP_AJ_G0007241.1 mouse_genomes_project 7 99884358 99887556 + Gm10605 lincRNA lincRNA MGP_AJ_T0008984.1 MGP_AJ_G0007241.1 mouse_genomes_project 7 99884561 99890135 + Gm10605 lincRNA lincRNA MGP_AJ_T0084795.1 MGP_AJ_G0032401.1 mouse_genomes_project 7 80967185 81009935 - Sec11a protein_coding processed_transcript MGP_AJ_T0084796.1 MGP_AJ_G0032401.1 mouse_genomes_project 7 80970012 81009903 - MGP_AJ_P0084796 Sec11a protein_coding protein_coding MGP_AJ_T0084797.1 MGP_AJ_G0032401.1 mouse_genomes_project 7 80977418 80988415 - Sec11a protein_coding processed_transcript MGP_AJ_T0084798.1 MGP_AJ_G0032401.1 mouse_genomes_project 7 80977418 80986318 - Sec11a protein_coding retained_intron MGP_AJ_T0084799.1 MGP_AJ_G0032401.1 mouse_genomes_project 7 80977418 81010170 - MGP_AJ_P0084799 Sec11a protein_coding protein_coding MGP_AJ_T0084800.1 MGP_AJ_G0032401.1 mouse_genomes_project 7 80977607 80978372 - Sec11a protein_coding retained_intron MGP_AJ_T0084801.1 MGP_AJ_G0032401.1 mouse_genomes_project 7 80977702 81010170 - MGP_AJ_P0084801 Sec11a protein_coding protein_coding MGP_AJ_T0084802.1 MGP_AJ_G0032401.1 mouse_genomes_project 7 80977804 81009901 - Sec11a protein_coding processed_transcript MGP_AJ_T0084803.1 MGP_AJ_G0032401.1 mouse_genomes_project 7 80978130 81010170 - MGP_AJ_P0084803 Sec11a protein_coding protein_coding MGP_AJ_T0084804.1 MGP_AJ_G0032401.1 mouse_genomes_project 7 80982914 81010132 - Sec11a protein_coding retained_intron MGP_AJ_T0081912.1 MGP_AJ_G0031696.1 mouse_genomes_project 7 14425631 14429780 + MGP_AJ_P0081912 Pnmal2 protein_coding protein_coding MGP_AJ_T0015895.1 MGP_AJ_G0013990.1 mouse_genomes_project 7 98689054 98689294 + processed_pseudogene processed_pseudogene MGP_AJ_T0084639.1 MGP_AJ_G0032376.1 mouse_genomes_project 7 79829357 79832070 + MGP_AJ_P0084639 Mesp2 protein_coding protein_coding MGP_AJ_T0082878.1 MGP_AJ_G0031967.1 mouse_genomes_project 7 28061693 28076143 + MGP_AJ_P0082878 Zfp420 protein_coding protein_coding MGP_AJ_T0082879.1 MGP_AJ_G0031967.1 mouse_genomes_project 7 28061718 28063322 + Zfp420 protein_coding retained_intron MGP_AJ_T0082880.1 MGP_AJ_G0031967.1 mouse_genomes_project 7 28061725 28076924 + Zfp420 protein_coding processed_transcript MGP_AJ_T0082881.1 MGP_AJ_G0031967.1 mouse_genomes_project 7 28061755 28076465 + MGP_AJ_P0082881 Zfp420 protein_coding protein_coding MGP_AJ_T0082882.1 MGP_AJ_G0031967.1 mouse_genomes_project 7 28072180 28074174 + Zfp420 protein_coding retained_intron MGP_AJ_T0005157.1 MGP_AJ_G0004391.1 mouse_genomes_project 7 17364338 17371049 + Gm20512 antisense antisense MGP_AJ_T0084031.1 MGP_AJ_G0032242.1 mouse_genomes_project 7 45783107 45785728 + MGP_AJ_P0084031 Myod1 protein_coding protein_coding MGP_AJ_T0010912.1 MGP_AJ_G0009034.1 mouse_genomes_project 7 113394298 113394427 + Gm44462 miRNA miRNA MGP_AJ_T0008812.1 MGP_AJ_G0007114.1 mouse_genomes_project 7 10194347 10206534 - 1810019N24Rik lincRNA lincRNA MGP_AJ_T0008813.1 MGP_AJ_G0007114.1 mouse_genomes_project 7 10195445 10195822 - 1810019N24Rik lincRNA lincRNA MGP_AJ_T0015852.1 MGP_AJ_G0013947.1 mouse_genomes_project 7 70376656 70377666 + processed_pseudogene processed_pseudogene MGP_AJ_T0082678.1 MGP_AJ_G0031920.1 mouse_genomes_project 7 26482973 26495951 - MGP_AJ_P0082678 Plekhg2 protein_coding protein_coding MGP_AJ_T0082679.1 MGP_AJ_G0031920.1 mouse_genomes_project 7 26482974 26496295 - Plekhg2 protein_coding retained_intron MGP_AJ_T0082680.1 MGP_AJ_G0031920.1 mouse_genomes_project 7 26482974 26487059 - Plekhg2 protein_coding retained_intron MGP_AJ_T0082681.1 MGP_AJ_G0031920.1 mouse_genomes_project 7 26482974 26495292 - MGP_AJ_P0082681 Plekhg2 protein_coding protein_coding MGP_AJ_T0082682.1 MGP_AJ_G0031920.1 mouse_genomes_project 7 26482974 26496212 - MGP_AJ_P0082682 Plekhg2 protein_coding protein_coding MGP_AJ_T0082683.1 MGP_AJ_G0031920.1 mouse_genomes_project 7 26484461 26496317 - MGP_AJ_P0082683 Plekhg2 protein_coding protein_coding MGP_AJ_T0082684.1 MGP_AJ_G0031920.1 mouse_genomes_project 7 26487721 26489210 - Plekhg2 protein_coding retained_intron MGP_AJ_T0082685.1 MGP_AJ_G0031920.1 mouse_genomes_project 7 26492127 26495445 - MGP_AJ_P0082685 Plekhg2 protein_coding protein_coding MGP_AJ_T0082686.1 MGP_AJ_G0031920.1 mouse_genomes_project 7 26493798 26495798 - MGP_AJ_P0082686 Plekhg2 protein_coding nonsense_mediated_decay MGP_AJ_T0082687.1 MGP_AJ_G0031920.1 mouse_genomes_project 7 26494133 26495226 - MGP_AJ_P0082687 Plekhg2 protein_coding protein_coding MGP_AJ_T0010902.1 MGP_AJ_G0009024.1 mouse_genomes_project 7 81617818 81617891 + Mir1839 miRNA miRNA MGP_AJ_T0102817.1 MGP_AJ_G0040557.1 mouse_genomes_project 7 40559695 40559935 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0086358.1 MGP_AJ_G0032933.1 mouse_genomes_project 7 122883036 122900279 - MGP_AJ_P0086358 Ndufab1 protein_coding protein_coding MGP_AJ_T0086359.1 MGP_AJ_G0032933.1 mouse_genomes_project 7 122886091 122889770 - Ndufab1 protein_coding retained_intron MGP_AJ_T0086360.1 MGP_AJ_G0032933.1 mouse_genomes_project 7 122887802 122900244 - MGP_AJ_P0086360 Ndufab1 protein_coding protein_coding MGP_AJ_T0086361.1 MGP_AJ_G0032933.1 mouse_genomes_project 7 122888564 122891075 - Ndufab1 protein_coding retained_intron MGP_AJ_T0086362.1 MGP_AJ_G0032933.1 mouse_genomes_project 7 122888577 122900129 - MGP_AJ_P0086362 Ndufab1 protein_coding protein_coding MGP_AJ_T0086363.1 MGP_AJ_G0032933.1 mouse_genomes_project 7 122888579 122891908 - Ndufab1 protein_coding retained_intron MGP_AJ_T0086364.1 MGP_AJ_G0032933.1 mouse_genomes_project 7 122889396 122900128 - MGP_AJ_P0086364 Ndufab1 protein_coding protein_coding MGP_AJ_T0086365.1 MGP_AJ_G0032933.1 mouse_genomes_project 7 122891107 122900099 - Ndufab1 protein_coding retained_intron MGP_AJ_T0086366.1 MGP_AJ_G0032933.1 mouse_genomes_project 7 122892157 122899709 - Ndufab1 protein_coding processed_transcript MGP_AJ_T0086367.1 MGP_AJ_G0032933.1 mouse_genomes_project 7 122894588 122900221 - Ndufab1 protein_coding retained_intron MGP_AJ_T0008989.1 MGP_AJ_G0007244.1 mouse_genomes_project 7 107837980 107885134 + Platr28 lincRNA lincRNA MGP_AJ_T0084997.1 MGP_AJ_G0032475.1 mouse_genomes_project 7 90135194 90162153 - MGP_AJ_P0084997 Eed protein_coding protein_coding MGP_AJ_T0084998.1 MGP_AJ_G0032475.1 mouse_genomes_project 7 90157928 90161729 - Eed protein_coding processed_transcript MGP_AJ_T0087090.1 MGP_AJ_G0033064.1 mouse_genomes_project 7 129226528 129270514 - MGP_AJ_P0087090 Rgs10 protein_coding protein_coding MGP_AJ_T0087091.1 MGP_AJ_G0033064.1 mouse_genomes_project 7 129226792 129244849 - Rgs10 protein_coding processed_transcript MGP_AJ_T0087092.1 MGP_AJ_G0033064.1 mouse_genomes_project 7 129226908 129229235 - Rgs10 protein_coding processed_transcript MGP_AJ_T0087093.1 MGP_AJ_G0033064.1 mouse_genomes_project 7 129240048 129256185 - Rgs10 protein_coding retained_intron MGP_AJ_T0087094.1 MGP_AJ_G0033064.1 mouse_genomes_project 7 129254616 129270504 - MGP_AJ_P0087094 Rgs10 protein_coding protein_coding MGP_AJ_T0087095.1 MGP_AJ_G0033064.1 mouse_genomes_project 7 129254887 129271099 - MGP_AJ_P0087095 Rgs10 protein_coding protein_coding MGP_AJ_T0082388.1 MGP_AJ_G0031844.1 mouse_genomes_project 7 23227248 23243855 - MGP_AJ_P0082388 Lipe protein_coding protein_coding MGP_AJ_T0082389.1 MGP_AJ_G0031844.1 mouse_genomes_project 7 23227260 23246941 - MGP_AJ_P0082389 Lipe protein_coding protein_coding MGP_AJ_T0082390.1 MGP_AJ_G0031844.1 mouse_genomes_project 7 23231398 23233172 - MGP_AJ_P0082390 Lipe protein_coding nonsense_mediated_decay MGP_AJ_T0082391.1 MGP_AJ_G0031844.1 mouse_genomes_project 7 23231419 23232054 - Lipe protein_coding retained_intron MGP_AJ_T0082392.1 MGP_AJ_G0031844.1 mouse_genomes_project 7 23236806 23238723 - MGP_AJ_P0082392 Lipe protein_coding protein_coding MGP_AJ_T0082393.1 MGP_AJ_G0031844.1 mouse_genomes_project 7 23245689 23246940 - MGP_AJ_P0082393 Lipe protein_coding protein_coding MGP_AJ_T0083160.1 MGP_AJ_G0032030.1 mouse_genomes_project 7 29182856 29190843 - MGP_AJ_P0083160 Usf2 protein_coding unknown_likely_coding MGP_AJ_T0083161.1 MGP_AJ_G0032030.1 mouse_genomes_project 7 29190012 29190736 - Usf2 protein_coding processed_transcript MGP_AJ_T0085738.1 MGP_AJ_G0032740.1 mouse_genomes_project 7 106050451 106069398 + Dnhd1 protein_coding processed_transcript MGP_AJ_T0085744.1 MGP_AJ_G0032740.1 mouse_genomes_project 7 106050468 106096365 + Dnhd1 protein_coding processed_transcript MGP_AJ_T0085748.1 MGP_AJ_G0032740.1 mouse_genomes_project 7 106061174 106136878 + MGP_AJ_P0085748 Dnhd1 protein_coding protein_coding MGP_AJ_T0085749.1 MGP_AJ_G0032740.1 mouse_genomes_project 7 106061555 106136846 + MGP_AJ_P0085749 Dnhd1 protein_coding unknown_likely_coding MGP_AJ_T0085750.1 MGP_AJ_G0032740.1 mouse_genomes_project 7 106085892 106090117 + Dnhd1 protein_coding retained_intron MGP_AJ_T0085751.1 MGP_AJ_G0032740.1 mouse_genomes_project 7 106089940 106096358 + MGP_AJ_P0085751 Dnhd1 protein_coding protein_coding MGP_AJ_T0087781.1 MGP_AJ_G0033233.1 mouse_genomes_project 7 143241000 143242227 - MGP_AJ_P0087781 protein_coding protein_coding MGP_AJ_T0100132.1 MGP_AJ_G0038098.1 mouse_genomes_project 7 1674746 1674848 + Gm24537 snRNA snRNA MGP_AJ_T0005209.1 MGP_AJ_G0004431.1 mouse_genomes_project 7 43858017 43860554 + Gm44646 antisense antisense MGP_AJ_T0086836.1 MGP_AJ_G0033014.1 mouse_genomes_project 7 128130751 128169885 + MGP_AJ_P0086836 Itgal protein_coding protein_coding MGP_AJ_T0086837.1 MGP_AJ_G0033014.1 mouse_genomes_project 7 128130782 128169886 + MGP_AJ_P0086837 Itgal protein_coding protein_coding MGP_AJ_T0086838.1 MGP_AJ_G0033014.1 mouse_genomes_project 7 128130806 128166049 + MGP_AJ_P0086838 Itgal protein_coding protein_coding MGP_AJ_T0086839.1 MGP_AJ_G0033014.1 mouse_genomes_project 7 128130901 128168476 + MGP_AJ_P0086839 Itgal protein_coding protein_coding MGP_AJ_T0086840.1 MGP_AJ_G0033014.1 mouse_genomes_project 7 128131924 128134032 + Itgal protein_coding processed_transcript MGP_AJ_T0086841.1 MGP_AJ_G0033014.1 mouse_genomes_project 7 128143853 128169885 + MGP_AJ_P0086841 Itgal protein_coding protein_coding MGP_AJ_T0081386.1 MGP_AJ_G0031514.1 mouse_genomes_project 7 1053588 1067047 - MGP_AJ_P0081386 1700027J19Rik protein_coding protein_coding MGP_AJ_T0081387.1 MGP_AJ_G0031514.1 mouse_genomes_project 7 1053879 1066726 - MGP_AJ_P0081387 1700027J19Rik protein_coding protein_coding MGP_AJ_T0081388.1 MGP_AJ_G0031514.1 mouse_genomes_project 7 1054104 1066629 - MGP_AJ_P0081388 1700027J19Rik protein_coding protein_coding MGP_AJ_T0081458.1 MGP_AJ_G0031527.1 mouse_genomes_project 7 1564523 1590695 - MGP_AJ_P0081458 Ppp6r1 protein_coding protein_coding MGP_AJ_T0081459.1 MGP_AJ_G0031527.1 mouse_genomes_project 7 1569944 1574065 - Ppp6r1 protein_coding retained_intron MGP_AJ_T0081460.1 MGP_AJ_G0031527.1 mouse_genomes_project 7 1574459 1590666 - Ppp6r1 protein_coding retained_intron MGP_AJ_T0081461.1 MGP_AJ_G0031527.1 mouse_genomes_project 7 1575197 1577189 - MGP_AJ_P0081461 Ppp6r1 protein_coding nonsense_mediated_decay MGP_AJ_T0081462.1 MGP_AJ_G0031527.1 mouse_genomes_project 7 1576038 1581312 - MGP_AJ_P0081462 Ppp6r1 protein_coding protein_coding MGP_AJ_T0081463.1 MGP_AJ_G0031527.1 mouse_genomes_project 7 1577141 1590657 - MGP_AJ_P0081463 Ppp6r1 protein_coding protein_coding MGP_AJ_T0086041.1 MGP_AJ_G0032859.1 mouse_genomes_project 7 114211354 114269643 + MGP_AJ_P0086041 Far1 protein_coding protein_coding MGP_AJ_T0086042.1 MGP_AJ_G0032859.1 mouse_genomes_project 7 114211381 114248642 + Far1 protein_coding retained_intron MGP_AJ_T0086043.1 MGP_AJ_G0032859.1 mouse_genomes_project 7 114211381 114245718 + MGP_AJ_P0086043 Far1 protein_coding protein_coding MGP_AJ_T0086044.1 MGP_AJ_G0032859.1 mouse_genomes_project 7 114211381 114269643 + MGP_AJ_P0086044 Far1 protein_coding protein_coding MGP_AJ_T0086045.1 MGP_AJ_G0032859.1 mouse_genomes_project 7 114211382 114268590 + MGP_AJ_P0086045 Far1 protein_coding protein_coding MGP_AJ_T0086046.1 MGP_AJ_G0032859.1 mouse_genomes_project 7 114211397 114248177 + MGP_AJ_P0086046 Far1 protein_coding protein_coding MGP_AJ_T0086047.1 MGP_AJ_G0032859.1 mouse_genomes_project 7 114211401 114223859 + Far1 protein_coding retained_intron MGP_AJ_T0086048.1 MGP_AJ_G0032859.1 mouse_genomes_project 7 114211618 114237527 + MGP_AJ_P0086048 Far1 protein_coding protein_coding MGP_AJ_T0086049.1 MGP_AJ_G0032859.1 mouse_genomes_project 7 114245595 114251280 + Far1 protein_coding retained_intron MGP_AJ_T0086050.1 MGP_AJ_G0032859.1 mouse_genomes_project 7 114259046 114266282 + Far1 protein_coding retained_intron MGP_AJ_T0086051.1 MGP_AJ_G0032859.1 mouse_genomes_project 7 114264231 114266337 + Far1 protein_coding retained_intron MGP_AJ_T0102784.1 MGP_AJ_G0040525.1 mouse_genomes_project 7 12213423 12213679 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0085102.1 MGP_AJ_G0032501.1 mouse_genomes_project 7 97765862 97792197 - MGP_AJ_P0085102 Aamdc protein_coding protein_coding MGP_AJ_T0085103.1 MGP_AJ_G0032501.1 mouse_genomes_project 7 97765865 97796026 - MGP_AJ_P0085103 Aamdc protein_coding protein_coding MGP_AJ_T0085104.1 MGP_AJ_G0032501.1 mouse_genomes_project 7 97765870 97796032 - MGP_AJ_P0085104 Aamdc protein_coding protein_coding MGP_AJ_T0085105.1 MGP_AJ_G0032501.1 mouse_genomes_project 7 97765871 97795945 - MGP_AJ_P0085105 Aamdc protein_coding nonsense_mediated_decay MGP_AJ_T0085106.1 MGP_AJ_G0032501.1 mouse_genomes_project 7 97765878 97796033 - Aamdc protein_coding processed_transcript MGP_AJ_T0085107.1 MGP_AJ_G0032501.1 mouse_genomes_project 7 97766073 97795988 - MGP_AJ_P0085107 Aamdc protein_coding protein_coding MGP_AJ_T0085108.1 MGP_AJ_G0032501.1 mouse_genomes_project 7 97766079 97795989 - MGP_AJ_P0085108 Aamdc protein_coding nonsense_mediated_decay MGP_AJ_T0085109.1 MGP_AJ_G0032501.1 mouse_genomes_project 7 97766096 97796021 - MGP_AJ_P0085109 Aamdc protein_coding protein_coding MGP_AJ_T0085110.1 MGP_AJ_G0032501.1 mouse_genomes_project 7 97766201 97795966 - MGP_AJ_P0085110 Aamdc protein_coding protein_coding MGP_AJ_T0085111.1 MGP_AJ_G0032501.1 mouse_genomes_project 7 97766246 97795929 - MGP_AJ_P0085111 Aamdc protein_coding protein_coding MGP_AJ_T0085112.1 MGP_AJ_G0032501.1 mouse_genomes_project 7 97792443 97794774 - Aamdc protein_coding retained_intron MGP_AJ_T0005211.1 MGP_AJ_G0004433.1 mouse_genomes_project 7 45024795 45026866 - antisense antisense MGP_AJ_T0005212.1 MGP_AJ_G0004433.1 mouse_genomes_project 7 45025889 45027134 - antisense antisense MGP_AJ_T0081948.1 MGP_AJ_G0031713.1 mouse_genomes_project 7 16044550 16050165 - MGP_AJ_P0081948 Psg26 protein_coding protein_coding MGP_AJ_T0085599.1 MGP_AJ_G0032675.1 mouse_genomes_project 7 104506108 104507056 - MGP_AJ_P0085599 Olfr645 protein_coding protein_coding MGP_AJ_T0102895.1 MGP_AJ_G0040635.1 mouse_genomes_project 7 103870036 103871003 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0011696.1 MGP_AJ_G0009818.1 mouse_genomes_project 7 127875559 127875805 + Gm25333 misc_RNA misc_RNA MGP_AJ_T0008980.1 MGP_AJ_G0007238.1 mouse_genomes_project 7 98777348 98797464 - A630091E08Rik lincRNA lincRNA MGP_AJ_T0082170.1 MGP_AJ_G0031781.1 mouse_genomes_project 7 17690833 17734651 + MGP_AJ_P0082170 Nlrp9b protein_coding protein_coding MGP_AJ_T0082171.1 MGP_AJ_G0031781.1 mouse_genomes_project 7 17708484 17734599 + MGP_AJ_P0082171 Nlrp9b protein_coding protein_coding MGP_AJ_T0083324.1 MGP_AJ_G0032062.1 mouse_genomes_project 7 33572405 33575040 + MGP_AJ_P0083324 Cebpa protein_coding protein_coding MGP_AJ_T0083325.1 MGP_AJ_G0032062.1 mouse_genomes_project 7 33572415 33575040 + MGP_AJ_P0083325 Cebpa protein_coding protein_coding MGP_AJ_T0005638.1 MGP_AJ_G0004746.1 mouse_genomes_project 7 79281550 79282674 - Gm44558 bidirectional_promoter_lncRNA bidirectional_promoter_lncRNA MGP_AJ_T0005639.1 MGP_AJ_G0004746.1 mouse_genomes_project 7 79281554 79282898 - Gm44558 bidirectional_promoter_lncRNA bidirectional_promoter_lncRNA MGP_AJ_T0005170.1 MGP_AJ_G0004401.1 mouse_genomes_project 7 24808106 24810977 - Gm44963 antisense antisense MGP_AJ_T0081311.1 MGP_AJ_G0031503.1 mouse_genomes_project 7 544077 559925 - MGP_AJ_P0081311 Mboat7 protein_coding protein_coding MGP_AJ_T0081312.1 MGP_AJ_G0031503.1 mouse_genomes_project 7 544081 558516 - MGP_AJ_P0081312 Mboat7 protein_coding nonsense_mediated_decay MGP_AJ_T0081313.1 MGP_AJ_G0031503.1 mouse_genomes_project 7 544690 558265 - MGP_AJ_P0081313 Mboat7 protein_coding protein_coding MGP_AJ_T0081314.1 MGP_AJ_G0031503.1 mouse_genomes_project 7 545063 550702 - Mboat7 protein_coding retained_intron MGP_AJ_T0081315.1 MGP_AJ_G0031503.1 mouse_genomes_project 7 549531 559354 - Mboat7 protein_coding retained_intron MGP_AJ_T0081316.1 MGP_AJ_G0031503.1 mouse_genomes_project 7 551777 559659 - MGP_AJ_P0081316 Mboat7 protein_coding protein_coding MGP_AJ_T0081317.1 MGP_AJ_G0031503.1 mouse_genomes_project 7 552132 559290 - MGP_AJ_P0081317 Mboat7 protein_coding nonsense_mediated_decay MGP_AJ_T0081318.1 MGP_AJ_G0031503.1 mouse_genomes_project 7 552148 559290 - MGP_AJ_P0081318 Mboat7 protein_coding protein_coding MGP_AJ_T0081319.1 MGP_AJ_G0031503.1 mouse_genomes_project 7 554828 559164 - MGP_AJ_P0081319 Mboat7 protein_coding protein_coding MGP_AJ_T0081320.1 MGP_AJ_G0031503.1 mouse_genomes_project 7 555257 559364 - Mboat7 protein_coding retained_intron MGP_AJ_T0081321.1 MGP_AJ_G0031503.1 mouse_genomes_project 7 555555 559182 - Mboat7 protein_coding retained_intron MGP_AJ_T0081322.1 MGP_AJ_G0031503.1 mouse_genomes_project 7 556083 559340 - Mboat7 protein_coding retained_intron MGP_AJ_T0081323.1 MGP_AJ_G0031503.1 mouse_genomes_project 7 558098 559056 - Mboat7 protein_coding retained_intron MGP_AJ_T0008915.1 MGP_AJ_G0007196.1 mouse_genomes_project 7 72524719 72525024 - Gm28745 lincRNA lincRNA MGP_AJ_T0087874.1 MGP_AJ_G0033248.1 mouse_genomes_project 7 143868684 143911127 - MGP_AJ_P0087874 Th protein_coding protein_coding MGP_AJ_T0087875.1 MGP_AJ_G0033248.1 mouse_genomes_project 7 143868684 143875939 - MGP_AJ_P0087875 Th protein_coding protein_coding MGP_AJ_T0087876.1 MGP_AJ_G0033248.1 mouse_genomes_project 7 143868898 143875886 - MGP_AJ_P0087876 Th protein_coding nonsense_mediated_decay MGP_AJ_T0087877.1 MGP_AJ_G0033248.1 mouse_genomes_project 7 143870336 143872534 - MGP_AJ_P0087877 Th protein_coding nonsense_mediated_decay MGP_AJ_T0087878.1 MGP_AJ_G0033248.1 mouse_genomes_project 7 143870364 143875891 - MGP_AJ_P0087878 Th protein_coding nonsense_mediated_decay MGP_AJ_T0087879.1 MGP_AJ_G0033248.1 mouse_genomes_project 7 143872522 143911119 - MGP_AJ_P0087879 Th protein_coding protein_coding MGP_AJ_T0082517.1 MGP_AJ_G0031879.1 mouse_genomes_project 7 25192532 25193938 - MGP_AJ_P0082517 Mia protein_coding protein_coding MGP_AJ_T0082518.1 MGP_AJ_G0031879.1 mouse_genomes_project 7 25192534 25193916 - Mia protein_coding retained_intron MGP_AJ_T0082519.1 MGP_AJ_G0031879.1 mouse_genomes_project 7 25192534 25193946 - MGP_AJ_P0082519 Mia protein_coding protein_coding MGP_AJ_T0082520.1 MGP_AJ_G0031879.1 mouse_genomes_project 7 25193279 25193785 - Mia protein_coding processed_transcript MGP_AJ_T0018407.1 MGP_AJ_G0015663.1 mouse_genomes_project 7 113293080 113360762 - 2310014F06Rik processed_transcript processed_transcript MGP_AJ_T0082737.1 MGP_AJ_G0031937.1 mouse_genomes_project 7 26905118 26915200 - MGP_AJ_P0082737 Nfkbib protein_coding protein_coding MGP_AJ_T0082738.1 MGP_AJ_G0031937.1 mouse_genomes_project 7 26905899 26915074 - MGP_AJ_P0082738 Nfkbib protein_coding protein_coding MGP_AJ_T0082739.1 MGP_AJ_G0031937.1 mouse_genomes_project 7 26908640 26916072 - MGP_AJ_P0082739 Nfkbib protein_coding protein_coding MGP_AJ_T0015736.1 MGP_AJ_G0013831.1 mouse_genomes_project 7 17567004 17567577 + processed_pseudogene processed_pseudogene MGP_AJ_T0015880.1 MGP_AJ_G0013975.1 mouse_genomes_project 7 88795637 88796617 - processed_pseudogene processed_pseudogene MGP_AJ_T0015743.1 MGP_AJ_G0013838.1 mouse_genomes_project 7 22562019 22562357 - processed_pseudogene processed_pseudogene MGP_AJ_T0002238.1 MGP_AJ_G0002150.1 mouse_genomes_project 7 57719356 57721593 + TEC TEC MGP_AJ_T0081788.1 MGP_AJ_G0031665.1 mouse_genomes_project 7 13375702 13380734 - MGP_AJ_P0081788 protein_coding protein_coding MGP_AJ_T0102773.1 MGP_AJ_G0040514.1 mouse_genomes_project 7 10769772 10770208 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0081567.1 MGP_AJ_G0031568.1 mouse_genomes_project 7 3108589 3133081 - MGP_AJ_P0081567 Zfp787 protein_coding protein_coding MGP_AJ_T0083570.1 MGP_AJ_G0032129.1 mouse_genomes_project 7 42941205 42946285 + MGP_AJ_P0083570 Klk7 protein_coding protein_coding MGP_AJ_T0084889.1 MGP_AJ_G0032427.1 mouse_genomes_project 7 83671591 83707370 + Tmc3 protein_coding retained_intron MGP_AJ_T0084890.1 MGP_AJ_G0032427.1 mouse_genomes_project 7 83671595 83678544 + Tmc3 protein_coding retained_intron MGP_AJ_T0084891.1 MGP_AJ_G0032427.1 mouse_genomes_project 7 83671595 83714882 + MGP_AJ_P0084891 Tmc3 protein_coding protein_coding MGP_AJ_T0084892.1 MGP_AJ_G0032427.1 mouse_genomes_project 7 83671756 83712210 + MGP_AJ_P0084892 Tmc3 protein_coding protein_coding MGP_AJ_T0084893.1 MGP_AJ_G0032427.1 mouse_genomes_project 7 83686805 83688179 + Tmc3 protein_coding retained_intron MGP_AJ_T0102765.1 MGP_AJ_G0040506.1 mouse_genomes_project 7 9334262 9335540 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0087361.1 MGP_AJ_G0033123.1 mouse_genomes_project 7 139160888 139349318 - MGP_AJ_P0087361 Tcerg1l protein_coding protein_coding MGP_AJ_T0087362.1 MGP_AJ_G0033123.1 mouse_genomes_project 7 139161631 139220373 - Tcerg1l protein_coding processed_transcript MGP_AJ_T0087363.1 MGP_AJ_G0033123.1 mouse_genomes_project 7 139211475 139349320 - Tcerg1l protein_coding retained_intron MGP_AJ_T0008950.1 MGP_AJ_G0007220.1 mouse_genomes_project 7 79546308 79571494 + Gm35040 lincRNA lincRNA MGP_AJ_T0081675.1 MGP_AJ_G0031627.1 mouse_genomes_project 7 10124784 10136054 + Zfp128 protein_coding retained_intron MGP_AJ_T0081676.1 MGP_AJ_G0031627.1 mouse_genomes_project 7 10124784 10137646 + MGP_AJ_P0081676 Zfp128 protein_coding protein_coding MGP_AJ_T0085823.1 MGP_AJ_G0032777.1 mouse_genomes_project 7 108145134 108167437 + MGP_AJ_P0085823 Olfml1 protein_coding protein_coding MGP_AJ_T0008871.1 MGP_AJ_G0007162.1 mouse_genomes_project 7 40198063 40206435 + lincRNA lincRNA MGP_AJ_T0015884.1 MGP_AJ_G0013979.1 mouse_genomes_project 7 94825603 94825994 - processed_pseudogene processed_pseudogene MGP_AJ_T0084871.1 MGP_AJ_G0032421.1 mouse_genomes_project 7 82426538 82430869 + Adamtsl3 protein_coding processed_transcript MGP_AJ_T0084872.1 MGP_AJ_G0032421.1 mouse_genomes_project 7 82426576 82704746 + MGP_AJ_P0084872 Adamtsl3 protein_coding protein_coding MGP_AJ_T0084873.1 MGP_AJ_G0032421.1 mouse_genomes_project 7 82428061 82702721 + MGP_AJ_P0084873 Adamtsl3 protein_coding protein_coding MGP_AJ_T0084874.1 MGP_AJ_G0032421.1 mouse_genomes_project 7 82506440 82563434 + Adamtsl3 protein_coding retained_intron MGP_AJ_T0084875.1 MGP_AJ_G0032421.1 mouse_genomes_project 7 82702067 82703072 + MGP_AJ_P0084875 Adamtsl3 protein_coding protein_coding MGP_AJ_T0084686.1 MGP_AJ_G0032389.1 mouse_genomes_project 7 80337666 80359399 + MGP_AJ_P0084686 Prc1 protein_coding protein_coding MGP_AJ_T0084687.1 MGP_AJ_G0032389.1 mouse_genomes_project 7 80337667 80359399 + MGP_AJ_P0084687 Prc1 protein_coding protein_coding MGP_AJ_T0084688.1 MGP_AJ_G0032389.1 mouse_genomes_project 7 80337681 80355875 + Prc1 protein_coding retained_intron MGP_AJ_T0084689.1 MGP_AJ_G0032389.1 mouse_genomes_project 7 80337689 80358719 + MGP_AJ_P0084689 Prc1 protein_coding protein_coding MGP_AJ_T0084690.1 MGP_AJ_G0032389.1 mouse_genomes_project 7 80337690 80347533 + Prc1 protein_coding retained_intron MGP_AJ_T0084691.1 MGP_AJ_G0032389.1 mouse_genomes_project 7 80337695 80359391 + MGP_AJ_P0084691 Prc1 protein_coding protein_coding MGP_AJ_T0084692.1 MGP_AJ_G0032389.1 mouse_genomes_project 7 80337721 80359394 + MGP_AJ_P0084692 Prc1 protein_coding protein_coding MGP_AJ_T0084693.1 MGP_AJ_G0032389.1 mouse_genomes_project 7 80337729 80347723 + Prc1 protein_coding retained_intron MGP_AJ_T0084694.1 MGP_AJ_G0032389.1 mouse_genomes_project 7 80347496 80349067 + Prc1 protein_coding retained_intron MGP_AJ_T0084695.1 MGP_AJ_G0032389.1 mouse_genomes_project 7 80347830 80354006 + MGP_AJ_P0084695 Prc1 protein_coding protein_coding MGP_AJ_T0084696.1 MGP_AJ_G0032389.1 mouse_genomes_project 7 80352508 80359397 + MGP_AJ_P0084696 Prc1 protein_coding protein_coding MGP_AJ_T0084697.1 MGP_AJ_G0032389.1 mouse_genomes_project 7 80353970 80356623 + MGP_AJ_P0084697 Prc1 protein_coding protein_coding MGP_AJ_T0084698.1 MGP_AJ_G0032389.1 mouse_genomes_project 7 80354226 80358652 + MGP_AJ_P0084698 Prc1 protein_coding protein_coding MGP_AJ_T0084699.1 MGP_AJ_G0032389.1 mouse_genomes_project 7 80355431 80356826 + MGP_AJ_P0084699 Prc1 protein_coding protein_coding MGP_AJ_T0087487.1 MGP_AJ_G0033158.1 mouse_genomes_project 7 141317900 141318980 - MGP_AJ_P0087487 Olfr530 protein_coding protein_coding MGP_AJ_T0008898.1 MGP_AJ_G0007183.1 mouse_genomes_project 7 67047179 67065490 - 1700112J16Rik lincRNA lincRNA MGP_AJ_T0005186.1 MGP_AJ_G0004415.1 mouse_genomes_project 7 29189910 29201974 + antisense antisense MGP_AJ_T0084035.1 MGP_AJ_G0032244.1 mouse_genomes_project 7 45849549 46046964 - MGP_AJ_P0084035 Sergef protein_coding protein_coding MGP_AJ_T0084036.1 MGP_AJ_G0032244.1 mouse_genomes_project 7 45849602 46011401 - Sergef protein_coding processed_transcript MGP_AJ_T0084037.1 MGP_AJ_G0032244.1 mouse_genomes_project 7 45849855 46022947 - Sergef protein_coding processed_transcript MGP_AJ_T0084038.1 MGP_AJ_G0032244.1 mouse_genomes_project 7 45919722 46046929 - MGP_AJ_P0084038 Sergef protein_coding unknown_likely_coding MGP_AJ_T0084039.1 MGP_AJ_G0032244.1 mouse_genomes_project 7 46039818 46043106 - Sergef protein_coding retained_intron MGP_AJ_T0084040.1 MGP_AJ_G0032244.1 mouse_genomes_project 7 46039840 46046788 - MGP_AJ_P0084040 Sergef protein_coding protein_coding MGP_AJ_T0084041.1 MGP_AJ_G0032244.1 mouse_genomes_project 7 46039854 46046737 - Sergef protein_coding processed_transcript MGP_AJ_T0087133.1 MGP_AJ_G0033071.1 mouse_genomes_project 7 130427983 130471346 + MGP_AJ_P0087133 Wdr11 protein_coding protein_coding MGP_AJ_T0087134.1 MGP_AJ_G0033071.1 mouse_genomes_project 7 130428028 130461258 + Wdr11 protein_coding retained_intron MGP_AJ_T0087135.1 MGP_AJ_G0033071.1 mouse_genomes_project 7 130428038 130447920 + Wdr11 protein_coding retained_intron MGP_AJ_T0087136.1 MGP_AJ_G0033071.1 mouse_genomes_project 7 130429188 130468473 + MGP_AJ_P0087136 Wdr11 protein_coding nonsense_mediated_decay MGP_AJ_T0087137.1 MGP_AJ_G0033071.1 mouse_genomes_project 7 130440695 130443426 + Wdr11 protein_coding processed_transcript MGP_AJ_T0087138.1 MGP_AJ_G0033071.1 mouse_genomes_project 7 130442186 130471344 + Wdr11 protein_coding retained_intron MGP_AJ_T0087139.1 MGP_AJ_G0033071.1 mouse_genomes_project 7 130443424 130449670 + MGP_AJ_P0087139 Wdr11 protein_coding protein_coding MGP_AJ_T0087140.1 MGP_AJ_G0033071.1 mouse_genomes_project 7 130460673 130471342 + Wdr11 protein_coding retained_intron MGP_AJ_T0087141.1 MGP_AJ_G0033071.1 mouse_genomes_project 7 130464650 130469279 + MGP_AJ_P0087141 Wdr11 protein_coding nonsense_mediated_decay MGP_AJ_T0005133.1 MGP_AJ_G0004379.1 mouse_genomes_project 7 531868 536729 + Gm15929 antisense antisense MGP_AJ_T0082639.1 MGP_AJ_G0031907.1 mouse_genomes_project 7 26122699 26131059 - MGP_AJ_P0082639 Psmc4 protein_coding protein_coding MGP_AJ_T0082640.1 MGP_AJ_G0031907.1 mouse_genomes_project 7 26122708 26127973 - Psmc4 protein_coding retained_intron MGP_AJ_T0082641.1 MGP_AJ_G0031907.1 mouse_genomes_project 7 26122709 26131014 - Psmc4 protein_coding retained_intron MGP_AJ_T0082642.1 MGP_AJ_G0031907.1 mouse_genomes_project 7 26123580 26128300 - Psmc4 protein_coding retained_intron MGP_AJ_T0082643.1 MGP_AJ_G0031907.1 mouse_genomes_project 7 26123657 26128469 - Psmc4 protein_coding processed_transcript MGP_AJ_T0082644.1 MGP_AJ_G0031907.1 mouse_genomes_project 7 26128207 26131014 - Psmc4 protein_coding retained_intron MGP_AJ_T0102828.1 MGP_AJ_G0040568.1 mouse_genomes_project 7 43194720 43199368 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0084060.1 MGP_AJ_G0032251.1 mouse_genomes_project 7 46183818 46220073 - MGP_AJ_P0084060 Hps5 protein_coding nonsense_mediated_decay MGP_AJ_T0084061.1 MGP_AJ_G0032251.1 mouse_genomes_project 7 46183818 46220422 - MGP_AJ_P0084061 Hps5 protein_coding protein_coding MGP_AJ_T0084062.1 MGP_AJ_G0032251.1 mouse_genomes_project 7 46183818 46220394 - MGP_AJ_P0084062 Hps5 protein_coding protein_coding MGP_AJ_T0084063.1 MGP_AJ_G0032251.1 mouse_genomes_project 7 46183824 46220276 - MGP_AJ_P0084063 Hps5 protein_coding protein_coding MGP_AJ_T0084064.1 MGP_AJ_G0032251.1 mouse_genomes_project 7 46184331 46220073 - Hps5 protein_coding retained_intron MGP_AJ_T0084065.1 MGP_AJ_G0032251.1 mouse_genomes_project 7 46184592 46192315 - Hps5 protein_coding processed_transcript MGP_AJ_T0084066.1 MGP_AJ_G0032251.1 mouse_genomes_project 7 46186296 46198726 - MGP_AJ_P0084066 Hps5 protein_coding protein_coding MGP_AJ_T0084067.1 MGP_AJ_G0032251.1 mouse_genomes_project 7 46188196 46195797 - MGP_AJ_P0084067 Hps5 protein_coding protein_coding MGP_AJ_T0084068.1 MGP_AJ_G0032251.1 mouse_genomes_project 7 46190276 46191758 - Hps5 protein_coding retained_intron MGP_AJ_T0084069.1 MGP_AJ_G0032251.1 mouse_genomes_project 7 46199648 46202232 - Hps5 protein_coding retained_intron MGP_AJ_T0084070.1 MGP_AJ_G0032251.1 mouse_genomes_project 7 46210323 46220459 - MGP_AJ_P0084070 Hps5 protein_coding protein_coding MGP_AJ_T0084071.1 MGP_AJ_G0032251.1 mouse_genomes_project 7 46212690 46220098 - MGP_AJ_P0084071 Hps5 protein_coding protein_coding MGP_AJ_T0084072.1 MGP_AJ_G0032251.1 mouse_genomes_project 7 46213472 46215475 - Hps5 protein_coding processed_transcript MGP_AJ_T0083069.1 MGP_AJ_G0032008.1 mouse_genomes_project 7 28774160 28794191 - MGP_AJ_P0083069 Kmt2b protein_coding protein_coding MGP_AJ_T0083070.1 MGP_AJ_G0032008.1 mouse_genomes_project 7 28774160 28794200 - MGP_AJ_P0083070 Kmt2b protein_coding protein_coding MGP_AJ_T0083071.1 MGP_AJ_G0032008.1 mouse_genomes_project 7 28774162 28790825 - MGP_AJ_P0083071 Kmt2b protein_coding protein_coding MGP_AJ_T0083072.1 MGP_AJ_G0032008.1 mouse_genomes_project 7 28775055 28775967 - Kmt2b protein_coding retained_intron MGP_AJ_T0083073.1 MGP_AJ_G0032008.1 mouse_genomes_project 7 28778475 28779481 - Kmt2b protein_coding retained_intron MGP_AJ_T0083074.1 MGP_AJ_G0032008.1 mouse_genomes_project 7 28780879 28782471 - Kmt2b protein_coding processed_transcript MGP_AJ_T0083075.1 MGP_AJ_G0032008.1 mouse_genomes_project 7 28782336 28784316 - Kmt2b protein_coding processed_transcript MGP_AJ_T0083076.1 MGP_AJ_G0032008.1 mouse_genomes_project 7 28789749 28790559 - Kmt2b protein_coding processed_transcript MGP_AJ_T0005184.1 MGP_AJ_G0004413.1 mouse_genomes_project 7 28937407 28950324 + Gm26935 antisense antisense MGP_AJ_T0015920.1 MGP_AJ_G0014015.1 mouse_genomes_project 7 121337362 121338894 + processed_pseudogene processed_pseudogene MGP_AJ_T0083884.1 MGP_AJ_G0032205.1 mouse_genomes_project 7 44875299 44911921 + MGP_AJ_P0083884 Tulp2 protein_coding protein_coding MGP_AJ_T0083885.1 MGP_AJ_G0032205.1 mouse_genomes_project 7 44875300 44911374 + MGP_AJ_P0083885 Tulp2 protein_coding protein_coding MGP_AJ_T0083886.1 MGP_AJ_G0032205.1 mouse_genomes_project 7 44875401 44911376 + MGP_AJ_P0083886 Tulp2 protein_coding protein_coding MGP_AJ_T0083896.1 MGP_AJ_G0032205.1 mouse_genomes_project 7 44902700 44911588 + MGP_AJ_P0083896 Tulp2 protein_coding protein_coding MGP_AJ_T0083897.1 MGP_AJ_G0032205.1 mouse_genomes_project 7 44902718 44911381 + MGP_AJ_P0083897 Tulp2 protein_coding protein_coding MGP_AJ_T0083898.1 MGP_AJ_G0032205.1 mouse_genomes_project 7 44903575 44905682 + MGP_AJ_P0083898 Tulp2 protein_coding protein_coding MGP_AJ_T0083899.1 MGP_AJ_G0032205.1 mouse_genomes_project 7 44903596 44911376 + MGP_AJ_P0083899 Tulp2 protein_coding protein_coding MGP_AJ_T0083900.1 MGP_AJ_G0032205.1 mouse_genomes_project 7 44903600 44906941 + MGP_AJ_P0083900 Tulp2 protein_coding protein_coding MGP_AJ_T0083901.1 MGP_AJ_G0032205.1 mouse_genomes_project 7 44903631 44912626 + MGP_AJ_P0083901 Tulp2 protein_coding protein_coding MGP_AJ_T0083902.1 MGP_AJ_G0032205.1 mouse_genomes_project 7 44904802 44905315 + Tulp2 protein_coding processed_transcript MGP_AJ_T0005189.1 MGP_AJ_G0004418.1 mouse_genomes_project 7 29405521 29413442 + Gm10640 antisense antisense MGP_AJ_T0005190.1 MGP_AJ_G0004418.1 mouse_genomes_project 7 29412249 29421015 + Gm10640 antisense antisense MGP_AJ_T0085901.1 MGP_AJ_G0032828.1 mouse_genomes_project 7 110347776 110356284 + MGP_AJ_P0085901 Akip1 protein_coding protein_coding MGP_AJ_T0085902.1 MGP_AJ_G0032828.1 mouse_genomes_project 7 110347838 110353069 + MGP_AJ_P0085902 Akip1 protein_coding protein_coding MGP_AJ_T0085903.1 MGP_AJ_G0032828.1 mouse_genomes_project 7 110352928 110356063 + Akip1 protein_coding processed_transcript MGP_AJ_T0102903.1 MGP_AJ_G0040643.1 mouse_genomes_project 7 104420963 104421425 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0015946.1 MGP_AJ_G0014041.1 mouse_genomes_project 7 129851435 129852121 - processed_pseudogene processed_pseudogene MGP_AJ_T0085394.1 MGP_AJ_G0032565.1 mouse_genomes_project 7 102183394 102188690 - MGP_AJ_P0085394 Folr2 protein_coding protein_coding MGP_AJ_T0084933.1 MGP_AJ_G0032444.1 mouse_genomes_project 7 86445481 86446563 - MGP_AJ_P0084933 Olfr310 protein_coding protein_coding MGP_AJ_T0010882.1 MGP_AJ_G0009004.1 mouse_genomes_project 7 61616884 61616944 - Mir344h-1 miRNA miRNA MGP_AJ_T0083250.1 MGP_AJ_G0032046.1 mouse_genomes_project 7 32179728 32180912 + MGP_AJ_P0083250 Scgb1b24 protein_coding protein_coding MGP_AJ_T0010878.1 MGP_AJ_G0009000.1 mouse_genomes_project 7 61581518 61581587 - Gm22466 miRNA miRNA MGP_AJ_T0083478.1 MGP_AJ_G0032097.1 mouse_genomes_project 7 41422686 41424942 - MGP_AJ_P0083478 4933421I07Rik protein_coding protein_coding MGP_AJ_T0083479.1 MGP_AJ_G0032097.1 mouse_genomes_project 7 41423291 41424925 - 4933421I07Rik protein_coding retained_intron MGP_AJ_T0083515.1 MGP_AJ_G0032111.1 mouse_genomes_project 7 42571060 42590293 + MGP_AJ_P0083515 Gm45233 protein_coding nonsense_mediated_decay MGP_AJ_T0083517.1 MGP_AJ_G0032111.1 mouse_genomes_project 7 42571063 42590376 + MGP_AJ_P0083517 Gm45233 protein_coding nonsense_mediated_decay MGP_AJ_T0002324.1 MGP_AJ_G0002235.1 mouse_genomes_project 7 145771368 145772712 + TEC TEC MGP_AJ_T0087227.1 MGP_AJ_G0033088.1 mouse_genomes_project 7 132456385 132458444 + MGP_AJ_P0087227 Hmx3 protein_coding protein_coding MGP_AJ_T0087560.1 MGP_AJ_G0033191.1 mouse_genomes_project 7 142066936 142078991 + MGP_AJ_P0087560 Pkp3 protein_coding protein_coding MGP_AJ_T0087561.1 MGP_AJ_G0033191.1 mouse_genomes_project 7 142067865 142071365 + MGP_AJ_P0087561 Pkp3 protein_coding protein_coding MGP_AJ_T0087562.1 MGP_AJ_G0033191.1 mouse_genomes_project 7 142068478 142078991 + MGP_AJ_P0087562 Pkp3 protein_coding protein_coding MGP_AJ_T0087563.1 MGP_AJ_G0033191.1 mouse_genomes_project 7 142068493 142071840 + MGP_AJ_P0087563 Pkp3 protein_coding protein_coding MGP_AJ_T0087564.1 MGP_AJ_G0033191.1 mouse_genomes_project 7 142068498 142071414 + MGP_AJ_P0087564 Pkp3 protein_coding nonsense_mediated_decay MGP_AJ_T0087565.1 MGP_AJ_G0033191.1 mouse_genomes_project 7 142076241 142077358 + Pkp3 protein_coding retained_intron MGP_AJ_T0087566.1 MGP_AJ_G0033191.1 mouse_genomes_project 7 142076626 142078988 + Pkp3 protein_coding retained_intron MGP_AJ_T0087567.1 MGP_AJ_G0033191.1 mouse_genomes_project 7 142076688 142077329 + Pkp3 protein_coding retained_intron MGP_AJ_T0087568.1 MGP_AJ_G0033191.1 mouse_genomes_project 7 142077891 142078397 + Pkp3 protein_coding retained_intron MGP_AJ_T0087569.1 MGP_AJ_G0033191.1 mouse_genomes_project 7 142078341 142078990 + MGP_AJ_P0087569 Pkp3 protein_coding protein_coding MGP_AJ_T0081250.1 MGP_AJ_G0031489.1 mouse_genomes_project 7 125062 155970 - MGP_AJ_P0081250 Nlrp12 protein_coding protein_coding MGP_AJ_T0081251.1 MGP_AJ_G0031489.1 mouse_genomes_project 7 145712 156097 - Nlrp12 protein_coding retained_intron MGP_AJ_T0002244.1 MGP_AJ_G0002156.1 mouse_genomes_project 7 64154857 64158260 - TEC TEC MGP_AJ_T0083792.1 MGP_AJ_G0032182.1 mouse_genomes_project 7 44513286 44529651 - Aldh16a1 protein_coding retained_intron MGP_AJ_T0083793.1 MGP_AJ_G0032182.1 mouse_genomes_project 7 44514280 44529698 - MGP_AJ_P0083793 Aldh16a1 protein_coding protein_coding MGP_AJ_T0083794.1 MGP_AJ_G0032182.1 mouse_genomes_project 7 44515210 44518065 - MGP_AJ_P0083794 Aldh16a1 protein_coding protein_coding MGP_AJ_T0083795.1 MGP_AJ_G0032182.1 mouse_genomes_project 7 44515820 44529709 - MGP_AJ_P0083795 Aldh16a1 protein_coding protein_coding MGP_AJ_T0083796.1 MGP_AJ_G0032182.1 mouse_genomes_project 7 44516154 44518099 - Aldh16a1 protein_coding processed_transcript MGP_AJ_T0083797.1 MGP_AJ_G0032182.1 mouse_genomes_project 7 44518427 44519409 - Aldh16a1 protein_coding retained_intron MGP_AJ_T0083798.1 MGP_AJ_G0032182.1 mouse_genomes_project 7 44520772 44529615 - Aldh16a1 protein_coding processed_transcript MGP_AJ_T0083799.1 MGP_AJ_G0032182.1 mouse_genomes_project 7 44520833 44529572 - Aldh16a1 protein_coding processed_transcript MGP_AJ_T0083800.1 MGP_AJ_G0032182.1 mouse_genomes_project 7 44520912 44521225 - Aldh16a1 protein_coding processed_transcript MGP_AJ_T0083801.1 MGP_AJ_G0032182.1 mouse_genomes_project 7 44521257 44522531 - Aldh16a1 protein_coding retained_intron MGP_AJ_T0083335.1 MGP_AJ_G0032065.1 mouse_genomes_project 7 33729004 33772227 - MGP_AJ_P0083335 Gpatch1 protein_coding protein_coding MGP_AJ_T0083336.1 MGP_AJ_G0032065.1 mouse_genomes_project 7 33729012 33772208 - MGP_AJ_P0083336 Gpatch1 protein_coding nonsense_mediated_decay MGP_AJ_T0083337.1 MGP_AJ_G0032065.1 mouse_genomes_project 7 33737677 33772227 - MGP_AJ_P0083337 Gpatch1 protein_coding nonsense_mediated_decay MGP_AJ_T0083338.1 MGP_AJ_G0032065.1 mouse_genomes_project 7 33737710 33739378 - Gpatch1 protein_coding retained_intron MGP_AJ_T0083339.1 MGP_AJ_G0032065.1 mouse_genomes_project 7 33760877 33772182 - Gpatch1 protein_coding retained_intron MGP_AJ_T0010928.1 MGP_AJ_G0009050.1 mouse_genomes_project 7 140914226 140914283 - Mir7686 miRNA miRNA MGP_AJ_T0087039.1 MGP_AJ_G0033053.1 mouse_genomes_project 7 128908508 128963130 + MGP_AJ_P0087039 protein_coding protein_coding MGP_AJ_T0087040.1 MGP_AJ_G0033053.1 mouse_genomes_project 7 128908537 128963129 + MGP_AJ_P0087040 protein_coding protein_coding MGP_AJ_T0087041.1 MGP_AJ_G0033053.1 mouse_genomes_project 7 128908547 128961729 + MGP_AJ_P0087041 protein_coding protein_coding MGP_AJ_T0087043.1 MGP_AJ_G0033053.1 mouse_genomes_project 7 128908551 128962170 + MGP_AJ_P0087043 protein_coding protein_coding MGP_AJ_T0087044.1 MGP_AJ_G0033053.1 mouse_genomes_project 7 128908596 128916370 + protein_coding processed_transcript MGP_AJ_T0087045.1 MGP_AJ_G0033053.1 mouse_genomes_project 7 128908611 128916612 + MGP_AJ_P0087045 protein_coding nonsense_mediated_decay MGP_AJ_T0086849.1 MGP_AJ_G0033019.1 mouse_genomes_project 7 128233073 128236840 - MGP_AJ_P0086849 E430018J23Rik protein_coding protein_coding MGP_AJ_T0083903.1 MGP_AJ_G0032207.1 mouse_genomes_project 7 44911909 44912763 - Ppp1r15a protein_coding processed_transcript MGP_AJ_T0083904.1 MGP_AJ_G0032207.1 mouse_genomes_project 7 44911910 44915034 - MGP_AJ_P0083904 Ppp1r15a protein_coding protein_coding MGP_AJ_T0083905.1 MGP_AJ_G0032207.1 mouse_genomes_project 7 44911915 44914912 - Ppp1r15a protein_coding retained_intron MGP_AJ_T0082710.1 MGP_AJ_G0031927.1 mouse_genomes_project 7 26656148 26657760 + MGP_AJ_P0082710 Ifnl2 protein_coding protein_coding MGP_AJ_T0087322.1 MGP_AJ_G0033108.1 mouse_genomes_project 7 134699483 134800256 + MGP_AJ_P0087322 Fank1 protein_coding protein_coding MGP_AJ_T0087323.1 MGP_AJ_G0033108.1 mouse_genomes_project 7 134699513 134794767 + MGP_AJ_P0087323 Fank1 protein_coding protein_coding MGP_AJ_T0087324.1 MGP_AJ_G0033108.1 mouse_genomes_project 7 134699564 134799589 + MGP_AJ_P0087324 Fank1 protein_coding protein_coding MGP_AJ_T0086089.1 MGP_AJ_G0032870.1 mouse_genomes_project 7 116183425 116743513 - MGP_AJ_P0086089 Sox6 protein_coding protein_coding MGP_AJ_T0086090.1 MGP_AJ_G0032870.1 mouse_genomes_project 7 116183897 116743513 - MGP_AJ_P0086090 Sox6 protein_coding protein_coding MGP_AJ_T0086091.1 MGP_AJ_G0032870.1 mouse_genomes_project 7 116183897 116751173 - MGP_AJ_P0086091 Sox6 protein_coding protein_coding MGP_AJ_T0086092.1 MGP_AJ_G0032870.1 mouse_genomes_project 7 116183897 116706972 - MGP_AJ_P0086092 Sox6 protein_coding protein_coding MGP_AJ_T0086093.1 MGP_AJ_G0032870.1 mouse_genomes_project 7 116187009 116524194 - MGP_AJ_P0086093 Sox6 protein_coding protein_coding MGP_AJ_T0086094.1 MGP_AJ_G0032870.1 mouse_genomes_project 7 116189211 116547134 - MGP_AJ_P0086094 Sox6 protein_coding protein_coding MGP_AJ_T0086095.1 MGP_AJ_G0032870.1 mouse_genomes_project 7 116189211 116547169 - MGP_AJ_P0086095 Sox6 protein_coding protein_coding MGP_AJ_T0086096.1 MGP_AJ_G0032870.1 mouse_genomes_project 7 116189224 116706972 - MGP_AJ_P0086096 Sox6 protein_coding protein_coding MGP_AJ_T0086097.1 MGP_AJ_G0032870.1 mouse_genomes_project 7 116224743 116746035 - Sox6 protein_coding retained_intron MGP_AJ_T0086098.1 MGP_AJ_G0032870.1 mouse_genomes_project 7 116225177 116304766 - Sox6 protein_coding processed_transcript MGP_AJ_T0086099.1 MGP_AJ_G0032870.1 mouse_genomes_project 7 116251878 116751225 - Sox6 protein_coding retained_intron MGP_AJ_T0086100.1 MGP_AJ_G0032870.1 mouse_genomes_project 7 116294040 116371922 - MGP_AJ_P0086100 Sox6 protein_coding protein_coding MGP_AJ_T0086101.1 MGP_AJ_G0032870.1 mouse_genomes_project 7 116304099 116371922 - Sox6 protein_coding retained_intron MGP_AJ_T0086102.1 MGP_AJ_G0032870.1 mouse_genomes_project 7 116480213 116562667 - MGP_AJ_P0086102 Sox6 protein_coding protein_coding MGP_AJ_T0086103.1 MGP_AJ_G0032870.1 mouse_genomes_project 7 116504690 116746946 - Sox6 protein_coding processed_transcript MGP_AJ_T0086104.1 MGP_AJ_G0032870.1 mouse_genomes_project 7 116545200 116547180 - Sox6 protein_coding retained_intron MGP_AJ_T0101448.1 MGP_AJ_G0039414.1 mouse_genomes_project 7 118887470 118887601 + Gm25683 snoRNA snoRNA MGP_AJ_T0086296.1 MGP_AJ_G0032914.1 mouse_genomes_project 7 121400981 121412019 - MGP_AJ_P0086296 Pdzd9 protein_coding protein_coding MGP_AJ_T0086297.1 MGP_AJ_G0032914.1 mouse_genomes_project 7 121401039 121411926 - Pdzd9 protein_coding processed_transcript MGP_AJ_T0087558.1 MGP_AJ_G0033189.1 mouse_genomes_project 7 142017921 142018411 + MGP_AJ_P0087558 Gm17387 protein_coding protein_coding MGP_AJ_T0002280.1 MGP_AJ_G0002191.1 mouse_genomes_project 7 80071910 80073862 + TEC TEC MGP_AJ_T0102811.1 MGP_AJ_G0040551.1 mouse_genomes_project 7 32327686 32328524 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0086616.1 MGP_AJ_G0032976.1 mouse_genomes_project 7 127518908 127520195 + Bola2 protein_coding retained_intron MGP_AJ_T0086617.1 MGP_AJ_G0032976.1 mouse_genomes_project 7 127518943 127520566 + MGP_AJ_P0086617 Bola2 protein_coding protein_coding MGP_AJ_T0086618.1 MGP_AJ_G0032976.1 mouse_genomes_project 7 127519473 127520201 + Bola2 protein_coding processed_transcript MGP_AJ_T0086619.1 MGP_AJ_G0032976.1 mouse_genomes_project 7 127519480 127520205 + MGP_AJ_P0086619 Bola2 protein_coding protein_coding MGP_AJ_T0086620.1 MGP_AJ_G0032976.1 mouse_genomes_project 7 127519510 127523305 + Bola2 protein_coding retained_intron MGP_AJ_T0082650.1 MGP_AJ_G0031910.1 mouse_genomes_project 7 26228557 26281401 + MGP_AJ_P0082650 9530053A07Rik protein_coding protein_coding MGP_AJ_T0082651.1 MGP_AJ_G0031910.1 mouse_genomes_project 7 26228907 26245855 + 9530053A07Rik protein_coding retained_intron MGP_AJ_T0082652.1 MGP_AJ_G0031910.1 mouse_genomes_project 7 26228907 26243532 + 9530053A07Rik protein_coding retained_intron MGP_AJ_T0082653.1 MGP_AJ_G0031910.1 mouse_genomes_project 7 26228907 26281385 + MGP_AJ_P0082653 9530053A07Rik protein_coding protein_coding MGP_AJ_T0015863.1 MGP_AJ_G0013958.1 mouse_genomes_project 7 77273117 77273620 - processed_pseudogene processed_pseudogene MGP_AJ_T0102744.1 MGP_AJ_G0040485.1 mouse_genomes_project 7 7369501 7370406 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0081975.1 MGP_AJ_G0031725.1 mouse_genomes_project 7 16562708 16594650 + MGP_AJ_P0081975 Nova2 protein_coding protein_coding MGP_AJ_T0082358.1 MGP_AJ_G0031838.1 mouse_genomes_project 7 23113977 23140419 + MGP_AJ_P0082358 Cic protein_coding protein_coding MGP_AJ_T0082359.1 MGP_AJ_G0031838.1 mouse_genomes_project 7 23114660 23117546 + MGP_AJ_P0082359 Cic protein_coding protein_coding MGP_AJ_T0082360.1 MGP_AJ_G0031838.1 mouse_genomes_project 7 23124745 23131229 + Cic protein_coding processed_transcript MGP_AJ_T0082361.1 MGP_AJ_G0031838.1 mouse_genomes_project 7 23125900 23131192 + Cic protein_coding processed_transcript MGP_AJ_T0082362.1 MGP_AJ_G0031838.1 mouse_genomes_project 7 23128438 23140405 + MGP_AJ_P0082362 Cic protein_coding protein_coding MGP_AJ_T0082363.1 MGP_AJ_G0031838.1 mouse_genomes_project 7 23128438 23140408 + MGP_AJ_P0082363 Cic protein_coding protein_coding MGP_AJ_T0082364.1 MGP_AJ_G0031838.1 mouse_genomes_project 7 23129069 23137602 + MGP_AJ_P0082364 Cic protein_coding protein_coding MGP_AJ_T0082365.1 MGP_AJ_G0031838.1 mouse_genomes_project 7 23129476 23131455 + Cic protein_coding processed_transcript MGP_AJ_T0082366.1 MGP_AJ_G0031838.1 mouse_genomes_project 7 23130929 23131944 + Cic protein_coding retained_intron MGP_AJ_T0082367.1 MGP_AJ_G0031838.1 mouse_genomes_project 7 23132082 23140402 + Cic protein_coding retained_intron MGP_AJ_T0082368.1 MGP_AJ_G0031838.1 mouse_genomes_project 7 23135522 23135966 + Cic protein_coding retained_intron MGP_AJ_T0082369.1 MGP_AJ_G0031838.1 mouse_genomes_project 7 23137430 23140405 + MGP_AJ_P0082369 Cic protein_coding protein_coding MGP_AJ_T0082370.1 MGP_AJ_G0031838.1 mouse_genomes_project 7 23137467 23138338 + Cic protein_coding retained_intron MGP_AJ_T0082371.1 MGP_AJ_G0031838.1 mouse_genomes_project 7 23138194 23138721 + Cic protein_coding retained_intron MGP_AJ_T0082372.1 MGP_AJ_G0031838.1 mouse_genomes_project 7 23139279 23140405 + MGP_AJ_P0082372 Cic protein_coding protein_coding MGP_AJ_T0101430.1 MGP_AJ_G0039396.1 mouse_genomes_project 7 88569566 88569699 + Gm25345 snoRNA snoRNA MGP_AJ_T0100169.1 MGP_AJ_G0038135.1 mouse_genomes_project 7 104675150 104675250 - Gm24783 snRNA snRNA MGP_AJ_T0005315.1 MGP_AJ_G0004506.1 mouse_genomes_project 7 144305516 144313392 - antisense antisense MGP_AJ_T0015745.1 MGP_AJ_G0013840.1 mouse_genomes_project 7 23267214 23267888 - processed_pseudogene processed_pseudogene MGP_AJ_T0101438.1 MGP_AJ_G0039404.1 mouse_genomes_project 7 106052227 106052366 - Gm22504 snoRNA snoRNA MGP_AJ_T0087629.1 MGP_AJ_G0033204.1 mouse_genomes_project 7 142285159 142288153 + MGP_AJ_P0087629 Drd4 protein_coding protein_coding MGP_AJ_T0083185.1 MGP_AJ_G0032034.1 mouse_genomes_project 7 29290612 29299690 - MGP_AJ_P0083185 Fxyd7 protein_coding protein_coding MGP_AJ_T0083186.1 MGP_AJ_G0032034.1 mouse_genomes_project 7 29290612 29299754 - MGP_AJ_P0083186 Fxyd7 protein_coding protein_coding MGP_AJ_T0084107.1 MGP_AJ_G0032265.1 mouse_genomes_project 7 47881727 47887824 - MGP_AJ_P0084107 Mrgprx1 protein_coding protein_coding MGP_AJ_T0102834.1 MGP_AJ_G0040574.1 mouse_genomes_project 7 43460193 43462495 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0087790.1 MGP_AJ_G0033237.1 mouse_genomes_project 7 143362048 143373589 - MGP_AJ_P0087790 Ctsd protein_coding protein_coding MGP_AJ_T0087791.1 MGP_AJ_G0033237.1 mouse_genomes_project 7 143366831 143378960 - MGP_AJ_P0087791 Ctsd protein_coding protein_coding MGP_AJ_T0087792.1 MGP_AJ_G0033237.1 mouse_genomes_project 7 143366850 143378741 - MGP_AJ_P0087792 Ctsd protein_coding nonsense_mediated_decay MGP_AJ_T0087793.1 MGP_AJ_G0033237.1 mouse_genomes_project 7 143374115 143378741 - Ctsd protein_coding retained_intron MGP_AJ_T0010937.1 MGP_AJ_G0009059.1 mouse_genomes_project 7 144777136 144777202 + Gm22064 miRNA miRNA MGP_AJ_T0085935.1 MGP_AJ_G0032839.1 mouse_genomes_project 7 110770616 110791199 + MGP_AJ_P0085935 Wee1 protein_coding protein_coding MGP_AJ_T0087935.1 MGP_AJ_G0033260.1 mouse_genomes_project 7 144589891 144609759 - MGP_AJ_P0087935 Tnfrsf26 protein_coding protein_coding MGP_AJ_T0083611.1 MGP_AJ_G0032138.1 mouse_genomes_project 7 43712124 43727051 - MGP_AJ_P0083611 1700008O03Rik protein_coding protein_coding MGP_AJ_T0083612.1 MGP_AJ_G0032138.1 mouse_genomes_project 7 43712180 43726535 - 1700008O03Rik protein_coding retained_intron MGP_AJ_T0083613.1 MGP_AJ_G0032138.1 mouse_genomes_project 7 43712318 43725621 - MGP_AJ_P0083613 1700008O03Rik protein_coding protein_coding MGP_AJ_T0083614.1 MGP_AJ_G0032138.1 mouse_genomes_project 7 43714763 43737708 - 1700008O03Rik protein_coding processed_transcript MGP_AJ_T0083615.1 MGP_AJ_G0032138.1 mouse_genomes_project 7 43730920 43737844 - 1700008O03Rik protein_coding processed_transcript MGP_AJ_T0082177.1 MGP_AJ_G0031785.1 mouse_genomes_project 7 21215692 21216640 - MGP_AJ_P0082177 Vmn1r167 protein_coding protein_coding MGP_AJ_T0085796.1 MGP_AJ_G0032756.1 mouse_genomes_project 7 107426739 107433300 + MGP_AJ_P0085796 Olfr701 protein_coding protein_coding MGP_AJ_T0085797.1 MGP_AJ_G0032756.1 mouse_genomes_project 7 107426774 107431737 + MGP_AJ_P0085797 Olfr701 protein_coding protein_coding MGP_AJ_T0002262.1 MGP_AJ_G0002173.1 mouse_genomes_project 7 75630877 75632175 + TEC TEC MGP_AJ_T0015704.1 MGP_AJ_G0013799.1 mouse_genomes_project 7 9435643 9436298 + processed_pseudogene processed_pseudogene MGP_AJ_T0015925.1 MGP_AJ_G0014020.1 mouse_genomes_project 7 123655436 123655763 + processed_pseudogene processed_pseudogene MGP_AJ_T0081346.1 MGP_AJ_G0031509.1 mouse_genomes_project 7 758770 766612 - MGP_AJ_P0081346 protein_coding protein_coding MGP_AJ_T0101415.1 MGP_AJ_G0039381.1 mouse_genomes_project 7 59289547 59289626 - Gm24966 snoRNA snoRNA MGP_AJ_T0087541.1 MGP_AJ_G0033182.1 mouse_genomes_project 7 141901265 141913125 + MGP_AJ_P0087541 Nlrp6 protein_coding unknown_likely_coding MGP_AJ_T0087542.1 MGP_AJ_G0033182.1 mouse_genomes_project 7 141904827 141912466 + MGP_AJ_P0087542 Nlrp6 protein_coding protein_coding MGP_AJ_T0087543.1 MGP_AJ_G0033182.1 mouse_genomes_project 7 141904996 141911475 + MGP_AJ_P0087543 Nlrp6 protein_coding protein_coding MGP_AJ_T0087544.1 MGP_AJ_G0033182.1 mouse_genomes_project 7 141906031 141906781 + Nlrp6 protein_coding retained_intron MGP_AJ_T0085045.1 MGP_AJ_G0032487.1 mouse_genomes_project 7 92822502 92848195 - MGP_AJ_P0085045 Pcf11 protein_coding protein_coding MGP_AJ_T0085046.1 MGP_AJ_G0032487.1 mouse_genomes_project 7 92823050 92841798 - MGP_AJ_P0085046 Pcf11 protein_coding protein_coding MGP_AJ_T0085047.1 MGP_AJ_G0032487.1 mouse_genomes_project 7 92825596 92826988 - Pcf11 protein_coding retained_intron MGP_AJ_T0081877.1 MGP_AJ_G0031690.1 mouse_genomes_project 7 14295886 14320934 + MGP_AJ_P0081877 Strn4 protein_coding protein_coding MGP_AJ_T0081878.1 MGP_AJ_G0031690.1 mouse_genomes_project 7 14296314 14320930 + MGP_AJ_P0081878 Strn4 protein_coding protein_coding MGP_AJ_T0081879.1 MGP_AJ_G0031690.1 mouse_genomes_project 7 14296375 14308811 + MGP_AJ_P0081879 Strn4 protein_coding nonsense_mediated_decay MGP_AJ_T0081880.1 MGP_AJ_G0031690.1 mouse_genomes_project 7 14302045 14304179 + Strn4 protein_coding processed_transcript MGP_AJ_T0081881.1 MGP_AJ_G0031690.1 mouse_genomes_project 7 14303068 14313972 + MGP_AJ_P0081881 Strn4 protein_coding nonsense_mediated_decay MGP_AJ_T0081882.1 MGP_AJ_G0031690.1 mouse_genomes_project 7 14304054 14308748 + Strn4 protein_coding retained_intron MGP_AJ_T0081883.1 MGP_AJ_G0031690.1 mouse_genomes_project 7 14308775 14311636 + Strn4 protein_coding retained_intron MGP_AJ_T0081884.1 MGP_AJ_G0031690.1 mouse_genomes_project 7 14310130 14311506 + Strn4 protein_coding processed_transcript MGP_AJ_T0081885.1 MGP_AJ_G0031690.1 mouse_genomes_project 7 14311095 14317985 + MGP_AJ_P0081885 Strn4 protein_coding nonsense_mediated_decay MGP_AJ_T0081886.1 MGP_AJ_G0031690.1 mouse_genomes_project 7 14312610 14313988 + Strn4 protein_coding retained_intron MGP_AJ_T0081887.1 MGP_AJ_G0031690.1 mouse_genomes_project 7 14313161 14314649 + Strn4 protein_coding retained_intron MGP_AJ_T0081888.1 MGP_AJ_G0031690.1 mouse_genomes_project 7 14316244 14320934 + Strn4 protein_coding retained_intron MGP_AJ_T0081889.1 MGP_AJ_G0031690.1 mouse_genomes_project 7 14317637 14320239 + MGP_AJ_P0081889 Strn4 protein_coding protein_coding MGP_AJ_T0081890.1 MGP_AJ_G0031690.1 mouse_genomes_project 7 14318558 14320022 + Strn4 protein_coding retained_intron MGP_AJ_T0085856.1 MGP_AJ_G0032808.1 mouse_genomes_project 7 109254484 109255435 + MGP_AJ_P0085856 Olfr507 protein_coding protein_coding MGP_AJ_T0085604.1 MGP_AJ_G0032680.1 mouse_genomes_project 7 104570646 104579946 - MGP_AJ_P0085604 Olfm5 protein_coding protein_coding MGP_AJ_T0085605.1 MGP_AJ_G0032680.1 mouse_genomes_project 7 104571750 104579927 - MGP_AJ_P0085605 Olfm5 protein_coding protein_coding MGP_AJ_T0083771.1 MGP_AJ_G0032169.1 mouse_genomes_project 7 44345041 44354203 - MGP_AJ_P0083771 protein_coding protein_coding MGP_AJ_T0081648.1 MGP_AJ_G0031612.1 mouse_genomes_project 7 9374885 9375827 + MGP_AJ_P0081648 Vmn1r78 protein_coding protein_coding MGP_AJ_T0015751.1 MGP_AJ_G0013846.1 mouse_genomes_project 7 23760919 23761271 + processed_pseudogene processed_pseudogene MGP_AJ_T0084011.1 MGP_AJ_G0032236.1 mouse_genomes_project 7 45376689 45431946 - MGP_AJ_P0084011 Abcc6 protein_coding protein_coding MGP_AJ_T0084012.1 MGP_AJ_G0032236.1 mouse_genomes_project 7 45377205 45377996 - Abcc6 protein_coding retained_intron MGP_AJ_T0084013.1 MGP_AJ_G0032236.1 mouse_genomes_project 7 45397085 45401484 - Abcc6 protein_coding retained_intron MGP_AJ_T0085597.1 MGP_AJ_G0032673.1 mouse_genomes_project 7 104479944 104480889 - MGP_AJ_P0085597 protein_coding protein_coding MGP_AJ_T0008809.1 MGP_AJ_G0007111.1 mouse_genomes_project 7 455032 468065 - Gm44920 lincRNA lincRNA MGP_AJ_T0083575.1 MGP_AJ_G0032131.1 mouse_genomes_project 7 42973196 42976511 + MGP_AJ_P0083575 Klk5 protein_coding protein_coding MGP_AJ_T0083576.1 MGP_AJ_G0032131.1 mouse_genomes_project 7 42973494 42984842 + MGP_AJ_P0083576 Klk5 protein_coding protein_coding MGP_AJ_T0081943.1 MGP_AJ_G0031710.1 mouse_genomes_project 7 15743185 15765214 + MGP_AJ_P0081943 Mill1 protein_coding protein_coding MGP_AJ_T0015936.1 MGP_AJ_G0014031.1 mouse_genomes_project 7 127985613 127986551 + processed_pseudogene processed_pseudogene MGP_AJ_T0011705.1 MGP_AJ_G0009827.1 mouse_genomes_project 7 144430365 144430426 + Gm27901 misc_RNA misc_RNA MGP_AJ_T0087625.1 MGP_AJ_G0033202.1 mouse_genomes_project 7 142261699 142269401 - MGP_AJ_P0087625 Cdhr5 protein_coding protein_coding MGP_AJ_T0087626.1 MGP_AJ_G0033202.1 mouse_genomes_project 7 142261699 142269401 - MGP_AJ_P0087626 Cdhr5 protein_coding protein_coding MGP_AJ_T0082889.1 MGP_AJ_G0031969.1 mouse_genomes_project 7 28113488 28121834 + MGP_AJ_P0082889 Zfp383 protein_coding nonsense_mediated_decay MGP_AJ_T0082890.1 MGP_AJ_G0031969.1 mouse_genomes_project 7 28113769 28121827 + MGP_AJ_P0082890 Zfp383 protein_coding protein_coding MGP_AJ_T0086040.1 MGP_AJ_G0032858.1 mouse_genomes_project 7 114075997 114078996 - MGP_AJ_P0086040 Pth protein_coding protein_coding MGP_AJ_T0102813.1 MGP_AJ_G0040553.1 mouse_genomes_project 7 32401043 32402225 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0081728.1 MGP_AJ_G0031639.1 mouse_genomes_project 7 10336339 10337266 - MGP_AJ_P0081728 Vmn1r85 protein_coding protein_coding MGP_AJ_T0082566.1 MGP_AJ_G0031888.1 mouse_genomes_project 7 25372609 25377346 - MGP_AJ_P0082566 Gm20479 protein_coding nonsense_mediated_decay MGP_AJ_T0002303.1 MGP_AJ_G0002214.1 mouse_genomes_project 7 125886422 125888887 - TEC TEC MGP_AJ_T0086219.1 MGP_AJ_G0032891.1 mouse_genomes_project 7 119885629 119925635 - MGP_AJ_P0086219 Gpr139 protein_coding protein_coding MGP_AJ_T0002254.1 MGP_AJ_G0002166.1 mouse_genomes_project 7 73615363 73618459 - TEC TEC MGP_AJ_T0002255.1 MGP_AJ_G0002166.1 mouse_genomes_project 7 73616327 73618352 - TEC TEC MGP_AJ_T0008838.1 MGP_AJ_G0007137.1 mouse_genomes_project 7 32881338 32962895 + Gm12766 lincRNA lincRNA MGP_AJ_T0084944.1 MGP_AJ_G0032454.1 mouse_genomes_project 7 86707009 86708031 + MGP_AJ_P0084944 Olfr297 protein_coding protein_coding MGP_AJ_T0100171.1 MGP_AJ_G0038137.1 mouse_genomes_project 7 108723734 108723792 - Gm25424 snRNA snRNA MGP_AJ_T0087581.1 MGP_AJ_G0033195.1 mouse_genomes_project 7 142151492 142160101 - MGP_AJ_P0087581 Rnh1 protein_coding protein_coding MGP_AJ_T0087582.1 MGP_AJ_G0033195.1 mouse_genomes_project 7 142151492 142164016 - MGP_AJ_P0087582 Rnh1 protein_coding protein_coding MGP_AJ_T0015686.1 MGP_AJ_G0013781.1 mouse_genomes_project 7 849561 850393 - processed_pseudogene processed_pseudogene MGP_AJ_T0087195.1 MGP_AJ_G0033078.1 mouse_genomes_project 7 131788798 131832527 + Htra1 protein_coding retained_intron MGP_AJ_T0087196.1 MGP_AJ_G0033078.1 mouse_genomes_project 7 131788890 131838251 + MGP_AJ_P0087196 Htra1 protein_coding protein_coding MGP_AJ_T0087197.1 MGP_AJ_G0033078.1 mouse_genomes_project 7 131796135 131838251 + Htra1 protein_coding processed_transcript MGP_AJ_T0087198.1 MGP_AJ_G0033078.1 mouse_genomes_project 7 131834260 131835034 + Htra1 protein_coding retained_intron MGP_AJ_T0087199.1 MGP_AJ_G0033078.1 mouse_genomes_project 7 131835320 131837987 + Htra1 protein_coding processed_transcript MGP_AJ_T0086542.1 MGP_AJ_G0032964.1 mouse_genomes_project 7 127286725 127294810 - MGP_AJ_P0086542 Sh2b1 protein_coding protein_coding MGP_AJ_T0086543.1 MGP_AJ_G0032964.1 mouse_genomes_project 7 127286727 127294823 - MGP_AJ_P0086543 Sh2b1 protein_coding protein_coding MGP_AJ_T0086544.1 MGP_AJ_G0032964.1 mouse_genomes_project 7 127286728 127294850 - MGP_AJ_P0086544 Sh2b1 protein_coding protein_coding MGP_AJ_T0086545.1 MGP_AJ_G0032964.1 mouse_genomes_project 7 127286730 127292788 - MGP_AJ_P0086545 Sh2b1 protein_coding nonsense_mediated_decay MGP_AJ_T0086546.1 MGP_AJ_G0032964.1 mouse_genomes_project 7 127286730 127294544 - MGP_AJ_P0086546 Sh2b1 protein_coding protein_coding MGP_AJ_T0086547.1 MGP_AJ_G0032964.1 mouse_genomes_project 7 127286730 127294542 - MGP_AJ_P0086547 Sh2b1 protein_coding protein_coding MGP_AJ_T0086548.1 MGP_AJ_G0032964.1 mouse_genomes_project 7 127286736 127294770 - MGP_AJ_P0086548 Sh2b1 protein_coding protein_coding MGP_AJ_T0086549.1 MGP_AJ_G0032964.1 mouse_genomes_project 7 127288630 127289926 - Sh2b1 protein_coding processed_transcript MGP_AJ_T0086550.1 MGP_AJ_G0032964.1 mouse_genomes_project 7 127292511 127295144 - MGP_AJ_P0086550 Sh2b1 protein_coding protein_coding MGP_AJ_T0081622.1 MGP_AJ_G0031590.1 mouse_genomes_project 7 3986120 3994871 + MGP_AJ_P0081622 Aurkc protein_coding protein_coding MGP_AJ_T0086938.1 MGP_AJ_G0033033.1 mouse_genomes_project 7 128562461 128570210 - MGP_AJ_P0086938 Ctf2 protein_coding protein_coding MGP_AJ_T0086224.1 MGP_AJ_G0032896.1 mouse_genomes_project 7 120279019 120326215 + MGP_AJ_P0086224 Acsm2 protein_coding protein_coding MGP_AJ_T0086225.1 MGP_AJ_G0032896.1 mouse_genomes_project 7 120286041 120322119 + MGP_AJ_P0086225 Acsm2 protein_coding protein_coding MGP_AJ_T0086226.1 MGP_AJ_G0032896.1 mouse_genomes_project 7 120286256 120326215 + MGP_AJ_P0086226 Acsm2 protein_coding protein_coding MGP_AJ_T0086227.1 MGP_AJ_G0032896.1 mouse_genomes_project 7 120286260 120303994 + MGP_AJ_P0086227 Acsm2 protein_coding protein_coding MGP_AJ_T0086228.1 MGP_AJ_G0032896.1 mouse_genomes_project 7 120286334 120307720 + Acsm2 protein_coding processed_transcript MGP_AJ_T0086229.1 MGP_AJ_G0032896.1 mouse_genomes_project 7 120288125 120321527 + MGP_AJ_P0086229 Acsm2 protein_coding unknown_likely_coding MGP_AJ_T0086230.1 MGP_AJ_G0032896.1 mouse_genomes_project 7 120306460 120321688 + MGP_AJ_P0086230 Acsm2 protein_coding protein_coding MGP_AJ_T0086231.1 MGP_AJ_G0032896.1 mouse_genomes_project 7 120314369 120318072 + MGP_AJ_P0086231 Acsm2 protein_coding protein_coding MGP_AJ_T0086232.1 MGP_AJ_G0032896.1 mouse_genomes_project 7 120316388 120316978 + Acsm2 protein_coding retained_intron MGP_AJ_T0082275.1 MGP_AJ_G0031820.1 mouse_genomes_project 7 22539167 22558300 - MGP_AJ_P0082275 Gm4763 protein_coding protein_coding MGP_AJ_T0082276.1 MGP_AJ_G0031820.1 mouse_genomes_project 7 22546007 22547804 - MGP_AJ_P0082276 Gm4763 protein_coding protein_coding MGP_AJ_T0082277.1 MGP_AJ_G0031820.1 mouse_genomes_project 7 22546423 22548065 - Gm4763 protein_coding processed_transcript MGP_AJ_T0015894.1 MGP_AJ_G0013989.1 mouse_genomes_project 7 98670561 98670875 - processed_pseudogene processed_pseudogene MGP_AJ_T0081936.1 MGP_AJ_G0031706.1 mouse_genomes_project 7 15466020 15472455 + MGP_AJ_P0081936 Ceacam11 protein_coding protein_coding MGP_AJ_T0082582.1 MGP_AJ_G0031893.1 mouse_genomes_project 7 25523418 25548142 + MGP_AJ_P0082582 Prx protein_coding protein_coding MGP_AJ_T0082583.1 MGP_AJ_G0031893.1 mouse_genomes_project 7 25532620 25547762 + MGP_AJ_P0082583 Prx protein_coding protein_coding MGP_AJ_T0082584.1 MGP_AJ_G0031893.1 mouse_genomes_project 7 25535445 25547969 + MGP_AJ_P0082584 Prx protein_coding protein_coding MGP_AJ_T0015928.1 MGP_AJ_G0014023.1 mouse_genomes_project 7 126041623 126042052 - processed_pseudogene processed_pseudogene MGP_AJ_T0081830.1 MGP_AJ_G0031676.1 mouse_genomes_project 7 13712412 13726383 - MGP_AJ_P0081830 C5ar1 protein_coding protein_coding MGP_AJ_T0081831.1 MGP_AJ_G0031676.1 mouse_genomes_project 7 13712414 13726181 - MGP_AJ_P0081831 C5ar1 protein_coding protein_coding MGP_AJ_T0082268.1 MGP_AJ_G0031816.1 mouse_genomes_project 7 22410756 22429102 + MGP_AJ_P0082268 Phldb3 protein_coding unknown_likely_coding MGP_AJ_T0082269.1 MGP_AJ_G0031816.1 mouse_genomes_project 7 22418775 22426444 + Phldb3 protein_coding retained_intron MGP_AJ_T0082270.1 MGP_AJ_G0031816.1 mouse_genomes_project 7 22419177 22422066 + Phldb3 protein_coding processed_transcript MGP_AJ_T0087342.1 MGP_AJ_G0033113.1 mouse_genomes_project 7 136210018 136214322 + MGP_AJ_P0087342 Nps protein_coding protein_coding MGP_AJ_T0085951.1 MGP_AJ_G0032842.1 mouse_genomes_project 7 111305839 111307991 + MGP_AJ_P0085951 Adm protein_coding protein_coding MGP_AJ_T0085952.1 MGP_AJ_G0032842.1 mouse_genomes_project 7 111305847 111307990 + MGP_AJ_P0085952 Adm protein_coding protein_coding MGP_AJ_T0085953.1 MGP_AJ_G0032842.1 mouse_genomes_project 7 111306206 111306730 + Adm protein_coding retained_intron MGP_AJ_T0085677.1 MGP_AJ_G0032725.1 mouse_genomes_project 7 105732177 105733226 + MGP_AJ_P0085677 protein_coding protein_coding MGP_AJ_T0002199.1 MGP_AJ_G0002111.1 mouse_genomes_project 7 22466503 22466741 + TEC TEC MGP_AJ_T0101423.1 MGP_AJ_G0039389.1 mouse_genomes_project 7 59692803 59692873 - Snord107 snoRNA snoRNA MGP_AJ_T0015891.1 MGP_AJ_G0013986.1 mouse_genomes_project 7 97812552 97813502 - processed_pseudogene processed_pseudogene MGP_AJ_T0087230.1 MGP_AJ_G0033090.1 mouse_genomes_project 7 132473953 132485468 + MGP_AJ_P0087230 Bub3 protein_coding protein_coding MGP_AJ_T0086055.1 MGP_AJ_G0032862.1 mouse_genomes_project 7 114757168 114829886 - MGP_AJ_P0086055 Rras2 protein_coding protein_coding MGP_AJ_T0102786.1 MGP_AJ_G0040527.1 mouse_genomes_project 7 12717360 12717648 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0085788.1 MGP_AJ_G0032748.1 mouse_genomes_project 7 107090162 107096719 - MGP_AJ_P0085788 protein_coding protein_coding MGP_AJ_T0086737.1 MGP_AJ_G0032991.1 mouse_genomes_project 7 127755755 127773308 + MGP_AJ_P0086737 Kctd13 protein_coding protein_coding MGP_AJ_T0086738.1 MGP_AJ_G0032991.1 mouse_genomes_project 7 127756797 127769031 + Kctd13 protein_coding retained_intron MGP_AJ_T0086739.1 MGP_AJ_G0032991.1 mouse_genomes_project 7 127769724 127772644 + Kctd13 protein_coding retained_intron MGP_AJ_T0082776.1 MGP_AJ_G0031943.1 mouse_genomes_project 7 27016410 27018254 + MGP_AJ_P0082776 Lgals7 protein_coding protein_coding MGP_AJ_T0082777.1 MGP_AJ_G0031943.1 mouse_genomes_project 7 27016786 27018842 + MGP_AJ_P0082777 Lgals7 protein_coding protein_coding MGP_AJ_T0082778.1 MGP_AJ_G0031943.1 mouse_genomes_project 7 27017012 27017546 + Lgals7 protein_coding processed_transcript MGP_AJ_T0083171.1 MGP_AJ_G0032033.1 mouse_genomes_project 7 29279812 29289939 - MGP_AJ_P0083171 Fxyd5 protein_coding protein_coding MGP_AJ_T0083172.1 MGP_AJ_G0032033.1 mouse_genomes_project 7 29279816 29290581 - MGP_AJ_P0083172 Fxyd5 protein_coding protein_coding MGP_AJ_T0083173.1 MGP_AJ_G0032033.1 mouse_genomes_project 7 29279820 29288524 - Fxyd5 protein_coding retained_intron MGP_AJ_T0083174.1 MGP_AJ_G0032033.1 mouse_genomes_project 7 29279820 29286048 - Fxyd5 protein_coding retained_intron MGP_AJ_T0083175.1 MGP_AJ_G0032033.1 mouse_genomes_project 7 29279820 29290218 - MGP_AJ_P0083175 Fxyd5 protein_coding protein_coding MGP_AJ_T0083176.1 MGP_AJ_G0032033.1 mouse_genomes_project 7 29279820 29287146 - MGP_AJ_P0083176 Fxyd5 protein_coding protein_coding MGP_AJ_T0083177.1 MGP_AJ_G0032033.1 mouse_genomes_project 7 29279823 29290178 - MGP_AJ_P0083177 Fxyd5 protein_coding protein_coding MGP_AJ_T0083178.1 MGP_AJ_G0032033.1 mouse_genomes_project 7 29279823 29290178 - MGP_AJ_P0083178 Fxyd5 protein_coding protein_coding MGP_AJ_T0083179.1 MGP_AJ_G0032033.1 mouse_genomes_project 7 29279853 29290246 - MGP_AJ_P0083179 Fxyd5 protein_coding protein_coding MGP_AJ_T0083180.1 MGP_AJ_G0032033.1 mouse_genomes_project 7 29279897 29290240 - MGP_AJ_P0083180 Fxyd5 protein_coding protein_coding MGP_AJ_T0083181.1 MGP_AJ_G0032033.1 mouse_genomes_project 7 29283531 29290216 - MGP_AJ_P0083181 Fxyd5 protein_coding protein_coding MGP_AJ_T0083182.1 MGP_AJ_G0032033.1 mouse_genomes_project 7 29283560 29290213 - MGP_AJ_P0083182 Fxyd5 protein_coding protein_coding MGP_AJ_T0083183.1 MGP_AJ_G0032033.1 mouse_genomes_project 7 29283562 29290187 - MGP_AJ_P0083183 Fxyd5 protein_coding protein_coding MGP_AJ_T0083184.1 MGP_AJ_G0032033.1 mouse_genomes_project 7 29289270 29290240 - Fxyd5 protein_coding retained_intron MGP_AJ_T0084594.1 MGP_AJ_G0032368.1 mouse_genomes_project 7 79453491 79474331 - MGP_AJ_P0084594 Polg protein_coding protein_coding MGP_AJ_T0084595.1 MGP_AJ_G0032368.1 mouse_genomes_project 7 79456641 79458895 - MGP_AJ_P0084595 Polg protein_coding protein_coding MGP_AJ_T0084596.1 MGP_AJ_G0032368.1 mouse_genomes_project 7 79456642 79462341 - Polg protein_coding retained_intron MGP_AJ_T0084597.1 MGP_AJ_G0032368.1 mouse_genomes_project 7 79456642 79474156 - Polg protein_coding retained_intron MGP_AJ_T0084598.1 MGP_AJ_G0032368.1 mouse_genomes_project 7 79456642 79457878 - MGP_AJ_P0084598 Polg protein_coding protein_coding MGP_AJ_T0084599.1 MGP_AJ_G0032368.1 mouse_genomes_project 7 79456823 79474149 - MGP_AJ_P0084599 Polg protein_coding nonsense_mediated_decay MGP_AJ_T0084600.1 MGP_AJ_G0032368.1 mouse_genomes_project 7 79456837 79474167 - MGP_AJ_P0084600 Polg protein_coding nonsense_mediated_decay MGP_AJ_T0084601.1 MGP_AJ_G0032368.1 mouse_genomes_project 7 79457426 79459341 - Polg protein_coding retained_intron MGP_AJ_T0084602.1 MGP_AJ_G0032368.1 mouse_genomes_project 7 79458847 79459183 - MGP_AJ_P0084602 Polg protein_coding protein_coding MGP_AJ_T0084603.1 MGP_AJ_G0032368.1 mouse_genomes_project 7 79458860 79461047 - MGP_AJ_P0084603 Polg protein_coding protein_coding MGP_AJ_T0084604.1 MGP_AJ_G0032368.1 mouse_genomes_project 7 79459190 79461601 - Polg protein_coding retained_intron MGP_AJ_T0084605.1 MGP_AJ_G0032368.1 mouse_genomes_project 7 79461206 79463326 - Polg protein_coding retained_intron MGP_AJ_T0084606.1 MGP_AJ_G0032368.1 mouse_genomes_project 7 79461791 79462655 - Polg protein_coding retained_intron MGP_AJ_T0084607.1 MGP_AJ_G0032368.1 mouse_genomes_project 7 79462746 79466702 - MGP_AJ_P0084607 Polg protein_coding protein_coding MGP_AJ_T0084608.1 MGP_AJ_G0032368.1 mouse_genomes_project 7 79463330 79467057 - MGP_AJ_P0084608 Polg protein_coding protein_coding MGP_AJ_T0084609.1 MGP_AJ_G0032368.1 mouse_genomes_project 7 79466782 79469065 - Polg protein_coding processed_transcript MGP_AJ_T0084610.1 MGP_AJ_G0032368.1 mouse_genomes_project 7 79471884 79474163 - Polg protein_coding retained_intron MGP_AJ_T0084611.1 MGP_AJ_G0032368.1 mouse_genomes_project 7 79472863 79474039 - MGP_AJ_P0084611 Polg protein_coding protein_coding MGP_AJ_T0087631.1 MGP_AJ_G0033206.1 mouse_genomes_project 7 142320949 142326488 + Tmem80 protein_coding processed_transcript MGP_AJ_T0087632.1 MGP_AJ_G0033206.1 mouse_genomes_project 7 142321098 142330358 + MGP_AJ_P0087632 Tmem80 protein_coding protein_coding MGP_AJ_T0087633.1 MGP_AJ_G0033206.1 mouse_genomes_project 7 142321098 142329419 + MGP_AJ_P0087633 Tmem80 protein_coding protein_coding MGP_AJ_T0087634.1 MGP_AJ_G0033206.1 mouse_genomes_project 7 142321340 142330013 + MGP_AJ_P0087634 Tmem80 protein_coding protein_coding MGP_AJ_T0087635.1 MGP_AJ_G0033206.1 mouse_genomes_project 7 142321340 142330358 + MGP_AJ_P0087635 Tmem80 protein_coding protein_coding MGP_AJ_T0087636.1 MGP_AJ_G0033206.1 mouse_genomes_project 7 142321370 142326529 + Tmem80 protein_coding processed_transcript MGP_AJ_T0087637.1 MGP_AJ_G0033206.1 mouse_genomes_project 7 142326515 142330015 + MGP_AJ_P0087637 Tmem80 protein_coding protein_coding MGP_AJ_T0087638.1 MGP_AJ_G0033206.1 mouse_genomes_project 7 142326582 142329269 + MGP_AJ_P0087638 Tmem80 protein_coding protein_coding MGP_AJ_T0087639.1 MGP_AJ_G0033206.1 mouse_genomes_project 7 142326859 142329349 + Tmem80 protein_coding retained_intron MGP_AJ_T0081740.1 MGP_AJ_G0031645.1 mouse_genomes_project 7 10533640 10568656 + Lig1 protein_coding processed_transcript MGP_AJ_T0081741.1 MGP_AJ_G0031645.1 mouse_genomes_project 7 10533670 10568656 + MGP_AJ_P0081741 Lig1 protein_coding protein_coding MGP_AJ_T0081742.1 MGP_AJ_G0031645.1 mouse_genomes_project 7 10535182 10568656 + MGP_AJ_P0081742 Lig1 protein_coding protein_coding MGP_AJ_T0081743.1 MGP_AJ_G0031645.1 mouse_genomes_project 7 10535191 10548830 + MGP_AJ_P0081743 Lig1 protein_coding protein_coding MGP_AJ_T0081744.1 MGP_AJ_G0031645.1 mouse_genomes_project 7 10535211 10549809 + MGP_AJ_P0081744 Lig1 protein_coding protein_coding MGP_AJ_T0081745.1 MGP_AJ_G0031645.1 mouse_genomes_project 7 10535221 10568657 + Lig1 protein_coding processed_transcript MGP_AJ_T0081746.1 MGP_AJ_G0031645.1 mouse_genomes_project 7 10535621 10568664 + Lig1 protein_coding processed_transcript MGP_AJ_T0081747.1 MGP_AJ_G0031645.1 mouse_genomes_project 7 10535621 10568656 + MGP_AJ_P0081747 Lig1 protein_coding protein_coding MGP_AJ_T0081748.1 MGP_AJ_G0031645.1 mouse_genomes_project 7 10537475 10568664 + Lig1 protein_coding processed_transcript MGP_AJ_T0081749.1 MGP_AJ_G0031645.1 mouse_genomes_project 7 10537475 10548557 + MGP_AJ_P0081749 Lig1 protein_coding protein_coding MGP_AJ_T0081750.1 MGP_AJ_G0031645.1 mouse_genomes_project 7 10560114 10563300 + Lig1 protein_coding retained_intron MGP_AJ_T0081751.1 MGP_AJ_G0031645.1 mouse_genomes_project 7 10564474 10568596 + Lig1 protein_coding retained_intron MGP_AJ_T0084078.1 MGP_AJ_G0032253.1 mouse_genomes_project 7 46266102 46276599 + MGP_AJ_P0084078 Ldha protein_coding protein_coding MGP_AJ_T0084079.1 MGP_AJ_G0032253.1 mouse_genomes_project 7 46270443 46280557 + MGP_AJ_P0084079 Ldha protein_coding protein_coding MGP_AJ_T0084080.1 MGP_AJ_G0032253.1 mouse_genomes_project 7 46270447 46273650 + Ldha protein_coding processed_transcript MGP_AJ_T0084081.1 MGP_AJ_G0032253.1 mouse_genomes_project 7 46270447 46272750 + Ldha protein_coding retained_intron MGP_AJ_T0084082.1 MGP_AJ_G0032253.1 mouse_genomes_project 7 46270467 46276608 + MGP_AJ_P0084082 Ldha protein_coding protein_coding MGP_AJ_T0084083.1 MGP_AJ_G0032253.1 mouse_genomes_project 7 46270701 46273656 + Ldha protein_coding processed_transcript MGP_AJ_T0084084.1 MGP_AJ_G0032253.1 mouse_genomes_project 7 46271735 46280556 + MGP_AJ_P0084084 Ldha protein_coding protein_coding MGP_AJ_T0084085.1 MGP_AJ_G0032253.1 mouse_genomes_project 7 46272109 46275601 + Ldha protein_coding retained_intron MGP_AJ_T0015823.1 MGP_AJ_G0013918.1 mouse_genomes_project 7 43651413 43652387 - processed_pseudogene processed_pseudogene MGP_AJ_T0085839.1 MGP_AJ_G0032791.1 mouse_genomes_project 7 108673953 108674892 + MGP_AJ_P0085839 Olfr481 protein_coding protein_coding MGP_AJ_T0018337.1 MGP_AJ_G0015637.1 mouse_genomes_project 7 25709553 25712751 - Gm44684 processed_transcript processed_transcript MGP_AJ_T0085880.1 MGP_AJ_G0032823.1 mouse_genomes_project 7 109776280 109813869 - MGP_AJ_P0085880 Lmo1 protein_coding unknown_likely_coding MGP_AJ_T0085881.1 MGP_AJ_G0032823.1 mouse_genomes_project 7 109776285 109809215 - MGP_AJ_P0085881 Lmo1 protein_coding protein_coding MGP_AJ_T0083507.1 MGP_AJ_G0032107.1 mouse_genomes_project 7 42557016 42562927 + MGP_AJ_P0083507 Lim2 protein_coding protein_coding MGP_AJ_T0087260.1 MGP_AJ_G0033099.1 mouse_genomes_project 7 133779378 133801284 + MGP_AJ_P0087260 Fam175b protein_coding protein_coding MGP_AJ_T0087261.1 MGP_AJ_G0033099.1 mouse_genomes_project 7 133779394 133805086 + MGP_AJ_P0087261 Fam175b protein_coding protein_coding MGP_AJ_T0087262.1 MGP_AJ_G0033099.1 mouse_genomes_project 7 133779406 133801021 + MGP_AJ_P0087262 Fam175b protein_coding nonsense_mediated_decay MGP_AJ_T0087263.1 MGP_AJ_G0033099.1 mouse_genomes_project 7 133779418 133795870 + Fam175b protein_coding retained_intron MGP_AJ_T0087264.1 MGP_AJ_G0033099.1 mouse_genomes_project 7 133779418 133805083 + MGP_AJ_P0087264 Fam175b protein_coding nonsense_mediated_decay MGP_AJ_T0087265.1 MGP_AJ_G0033099.1 mouse_genomes_project 7 133779476 133798754 + Fam175b protein_coding processed_transcript MGP_AJ_T0087266.1 MGP_AJ_G0033099.1 mouse_genomes_project 7 133799514 133805085 + Fam175b protein_coding retained_intron MGP_AJ_T0100147.1 MGP_AJ_G0038113.1 mouse_genomes_project 7 44628743 44628845 - Gm23585 snRNA snRNA MGP_AJ_T0102917.1 MGP_AJ_G0040657.1 mouse_genomes_project 7 143199373 143200046 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0081630.1 MGP_AJ_G0031598.1 mouse_genomes_project 7 7535234 7536230 + MGP_AJ_P0081630 Vmn1r67 protein_coding protein_coding MGP_AJ_T0008955.1 MGP_AJ_G0007224.1 mouse_genomes_project 7 80340943 80342828 - 6330403N20Rik lincRNA lincRNA MGP_AJ_T0002271.1 MGP_AJ_G0002182.1 mouse_genomes_project 7 79287607 79290599 + TEC TEC MGP_AJ_T0084223.1 MGP_AJ_G0032294.1 mouse_genomes_project 7 55931924 55975424 - MGP_AJ_P0084223 Nipa1 protein_coding protein_coding MGP_AJ_T0005185.1 MGP_AJ_G0004414.1 mouse_genomes_project 7 29082098 29082699 + Gm29439 antisense antisense MGP_AJ_T0083375.1 MGP_AJ_G0032073.1 mouse_genomes_project 7 34053270 34107933 + MGP_AJ_P0083375 Ankrd27 protein_coding protein_coding MGP_AJ_T0083376.1 MGP_AJ_G0032073.1 mouse_genomes_project 7 34053276 34077528 + MGP_AJ_P0083376 Ankrd27 protein_coding protein_coding MGP_AJ_T0083377.1 MGP_AJ_G0032073.1 mouse_genomes_project 7 34053276 34069751 + MGP_AJ_P0083377 Ankrd27 protein_coding protein_coding MGP_AJ_T0083378.1 MGP_AJ_G0032073.1 mouse_genomes_project 7 34053276 34107941 + MGP_AJ_P0083378 Ankrd27 protein_coding unknown_likely_coding MGP_AJ_T0083379.1 MGP_AJ_G0032073.1 mouse_genomes_project 7 34053281 34103259 + MGP_AJ_P0083379 Ankrd27 protein_coding nonsense_mediated_decay MGP_AJ_T0083380.1 MGP_AJ_G0032073.1 mouse_genomes_project 7 34053301 34071992 + MGP_AJ_P0083380 Ankrd27 protein_coding nonsense_mediated_decay MGP_AJ_T0083381.1 MGP_AJ_G0032073.1 mouse_genomes_project 7 34053303 34107933 + MGP_AJ_P0083381 Ankrd27 protein_coding protein_coding MGP_AJ_T0083382.1 MGP_AJ_G0032073.1 mouse_genomes_project 7 34069533 34072461 + Ankrd27 protein_coding retained_intron MGP_AJ_T0083383.1 MGP_AJ_G0032073.1 mouse_genomes_project 7 34080447 34083362 + Ankrd27 protein_coding retained_intron MGP_AJ_T0083384.1 MGP_AJ_G0032073.1 mouse_genomes_project 7 34084264 34096816 + MGP_AJ_P0083384 Ankrd27 protein_coding protein_coding MGP_AJ_T0083385.1 MGP_AJ_G0032073.1 mouse_genomes_project 7 34087867 34095911 + MGP_AJ_P0083385 Ankrd27 protein_coding nonsense_mediated_decay MGP_AJ_T0081295.1 MGP_AJ_G0031500.1 mouse_genomes_project 7 509195 513533 + Cnot3 protein_coding retained_intron MGP_AJ_T0081296.1 MGP_AJ_G0031500.1 mouse_genomes_project 7 509217 525594 + Cnot3 protein_coding retained_intron MGP_AJ_T0081297.1 MGP_AJ_G0031500.1 mouse_genomes_project 7 509236 515784 + MGP_AJ_P0081297 Cnot3 protein_coding protein_coding MGP_AJ_T0081298.1 MGP_AJ_G0031500.1 mouse_genomes_project 7 509279 525595 + MGP_AJ_P0081298 Cnot3 protein_coding protein_coding MGP_AJ_T0081299.1 MGP_AJ_G0031500.1 mouse_genomes_project 7 514783 524568 + MGP_AJ_P0081299 Cnot3 protein_coding unknown_likely_coding MGP_AJ_T0081300.1 MGP_AJ_G0031500.1 mouse_genomes_project 7 515241 519760 + MGP_AJ_P0081300 Cnot3 protein_coding protein_coding MGP_AJ_T0081301.1 MGP_AJ_G0031500.1 mouse_genomes_project 7 515503 523227 + MGP_AJ_P0081301 Cnot3 protein_coding nonsense_mediated_decay MGP_AJ_T0081302.1 MGP_AJ_G0031500.1 mouse_genomes_project 7 522105 525515 + Cnot3 protein_coding retained_intron MGP_AJ_T0081303.1 MGP_AJ_G0031500.1 mouse_genomes_project 7 523875 525515 + MGP_AJ_P0081303 Cnot3 protein_coding protein_coding MGP_AJ_T0084651.1 MGP_AJ_G0032381.1 mouse_genomes_project 7 80130071 80150661 - MGP_AJ_P0084651 Idh2 protein_coding protein_coding MGP_AJ_T0084652.1 MGP_AJ_G0032381.1 mouse_genomes_project 7 80130075 80150601 - MGP_AJ_P0084652 Idh2 protein_coding nonsense_mediated_decay MGP_AJ_T0084653.1 MGP_AJ_G0032381.1 mouse_genomes_project 7 80130254 80133629 - Idh2 protein_coding retained_intron MGP_AJ_T0084654.1 MGP_AJ_G0032381.1 mouse_genomes_project 7 80130268 80131255 - Idh2 protein_coding retained_intron MGP_AJ_T0084655.1 MGP_AJ_G0032381.1 mouse_genomes_project 7 80130284 80150573 - MGP_AJ_P0084655 Idh2 protein_coding protein_coding MGP_AJ_T0084656.1 MGP_AJ_G0032381.1 mouse_genomes_project 7 80131253 80136101 - MGP_AJ_P0084656 Idh2 protein_coding nonsense_mediated_decay MGP_AJ_T0084657.1 MGP_AJ_G0032381.1 mouse_genomes_project 7 80133391 80134359 - Idh2 protein_coding retained_intron MGP_AJ_T0008909.1 MGP_AJ_G0007190.1 mouse_genomes_project 7 71096037 71106960 + 6030442E23Rik lincRNA lincRNA MGP_AJ_T0083930.1 MGP_AJ_G0032213.1 mouse_genomes_project 7 45015959 45021371 + MGP_AJ_P0083930 Izumo1 protein_coding protein_coding MGP_AJ_T0083931.1 MGP_AJ_G0032213.1 mouse_genomes_project 7 45018540 45022959 + Izumo1 protein_coding retained_intron MGP_AJ_T0010911.1 MGP_AJ_G0009033.1 mouse_genomes_project 7 111478891 111478998 + miRNA miRNA MGP_AJ_T0083513.1 MGP_AJ_G0032110.1 mouse_genomes_project 7 42571015 42584589 + MGP_AJ_P0083513 Etfb protein_coding protein_coding MGP_AJ_T0083514.1 MGP_AJ_G0032110.1 mouse_genomes_project 7 42571051 42584453 + MGP_AJ_P0083514 Etfb protein_coding protein_coding MGP_AJ_T0083516.1 MGP_AJ_G0032110.1 mouse_genomes_project 7 42571062 42583362 + MGP_AJ_P0083516 Etfb protein_coding protein_coding MGP_AJ_T0083518.1 MGP_AJ_G0032110.1 mouse_genomes_project 7 42571082 42584570 + MGP_AJ_P0083518 Etfb protein_coding protein_coding MGP_AJ_T0083519.1 MGP_AJ_G0032110.1 mouse_genomes_project 7 42579678 42584570 + MGP_AJ_P0083519 Etfb protein_coding protein_coding MGP_AJ_T0083520.1 MGP_AJ_G0032110.1 mouse_genomes_project 7 42583289 42584569 + Etfb protein_coding processed_transcript MGP_AJ_T0083521.1 MGP_AJ_G0032110.1 mouse_genomes_project 7 42583824 42584572 + Etfb protein_coding processed_transcript MGP_AJ_T0083135.1 MGP_AJ_G0032026.1 mouse_genomes_project 7 29074277 29088387 - MGP_AJ_P0083135 Cd22 protein_coding protein_coding MGP_AJ_T0083136.1 MGP_AJ_G0032026.1 mouse_genomes_project 7 29074702 29089632 - MGP_AJ_P0083136 Cd22 protein_coding protein_coding MGP_AJ_T0083137.1 MGP_AJ_G0032026.1 mouse_genomes_project 7 29074702 29089428 - MGP_AJ_P0083137 Cd22 protein_coding protein_coding MGP_AJ_T0083138.1 MGP_AJ_G0032026.1 mouse_genomes_project 7 29074702 29089397 - MGP_AJ_P0083138 Cd22 protein_coding nonsense_mediated_decay MGP_AJ_T0083139.1 MGP_AJ_G0032026.1 mouse_genomes_project 7 29074704 29087858 - MGP_AJ_P0083139 Cd22 protein_coding protein_coding MGP_AJ_T0083140.1 MGP_AJ_G0032026.1 mouse_genomes_project 7 29075145 29089697 - MGP_AJ_P0083140 Cd22 protein_coding protein_coding MGP_AJ_T0083141.1 MGP_AJ_G0032026.1 mouse_genomes_project 7 29075171 29089642 - MGP_AJ_P0083141 Cd22 protein_coding nonsense_mediated_decay MGP_AJ_T0083142.1 MGP_AJ_G0032026.1 mouse_genomes_project 7 29079392 29082785 - MGP_AJ_P0083142 Cd22 protein_coding nonsense_mediated_decay MGP_AJ_T0083143.1 MGP_AJ_G0032026.1 mouse_genomes_project 7 29085478 29088583 - Cd22 protein_coding processed_transcript MGP_AJ_T0083144.1 MGP_AJ_G0032026.1 mouse_genomes_project 7 29086853 29089624 - MGP_AJ_P0083144 Cd22 protein_coding protein_coding MGP_AJ_T0083145.1 MGP_AJ_G0032026.1 mouse_genomes_project 7 29086993 29087517 - Cd22 protein_coding retained_intron MGP_AJ_T0083146.1 MGP_AJ_G0032026.1 mouse_genomes_project 7 29087033 29089641 - Cd22 protein_coding processed_transcript MGP_AJ_T0083147.1 MGP_AJ_G0032026.1 mouse_genomes_project 7 29087072 29089641 - Cd22 protein_coding processed_transcript MGP_AJ_T0083148.1 MGP_AJ_G0032026.1 mouse_genomes_project 7 29087148 29089631 - MGP_AJ_P0083148 Cd22 protein_coding protein_coding MGP_AJ_T0083149.1 MGP_AJ_G0032026.1 mouse_genomes_project 7 29088551 29089705 - Cd22 protein_coding processed_transcript MGP_AJ_T0087850.1 MGP_AJ_G0033243.1 mouse_genomes_project 7 143527322 143535017 + Mrpl23 protein_coding processed_transcript MGP_AJ_T0087851.1 MGP_AJ_G0033243.1 mouse_genomes_project 7 143527535 143535027 + MGP_AJ_P0087851 Mrpl23 protein_coding protein_coding MGP_AJ_T0087852.1 MGP_AJ_G0033243.1 mouse_genomes_project 7 143529045 143531569 + Mrpl23 protein_coding retained_intron MGP_AJ_T0087853.1 MGP_AJ_G0033243.1 mouse_genomes_project 7 143530627 143532190 + Mrpl23 protein_coding retained_intron MGP_AJ_T0002220.1 MGP_AJ_G0002132.1 mouse_genomes_project 7 42575005 42575482 + TEC TEC MGP_AJ_T0102078.1 MGP_AJ_G0039856.1 mouse_genomes_project 7 104750294 104752749 - transcribed_unprocessed_pseudogene processed_transcript MGP_AJ_T0102079.1 MGP_AJ_G0039856.1 mouse_genomes_project 7 104750987 104752228 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_AJ_T0082141.1 MGP_AJ_G0031771.1 mouse_genomes_project 7 17406340 17420333 - MGP_AJ_P0082141 Bcam protein_coding protein_coding MGP_AJ_T0082142.1 MGP_AJ_G0031771.1 mouse_genomes_project 7 17406766 17407161 - Bcam protein_coding retained_intron MGP_AJ_T0082143.1 MGP_AJ_G0031771.1 mouse_genomes_project 7 17413405 17420281 - Bcam protein_coding retained_intron MGP_AJ_T0082144.1 MGP_AJ_G0031771.1 mouse_genomes_project 7 17415345 17420802 - MGP_AJ_P0082144 Bcam protein_coding protein_coding MGP_AJ_T0082145.1 MGP_AJ_G0031771.1 mouse_genomes_project 7 17416719 17420281 - MGP_AJ_P0082145 Bcam protein_coding nonsense_mediated_decay MGP_AJ_T0102825.1 MGP_AJ_G0040565.1 mouse_genomes_project 7 43161697 43163868 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0005149.1 MGP_AJ_G0004387.1 mouse_genomes_project 7 15571643 15686733 - antisense antisense MGP_AJ_T0005150.1 MGP_AJ_G0004387.1 mouse_genomes_project 7 15574977 15686777 - antisense antisense MGP_AJ_T0087070.1 MGP_AJ_G0033062.1 mouse_genomes_project 7 129111785 129112846 + Slc5a2 protein_coding retained_intron MGP_AJ_T0087071.1 MGP_AJ_G0033062.1 mouse_genomes_project 7 129111804 129118374 + MGP_AJ_P0087071 Slc5a2 protein_coding protein_coding MGP_AJ_T0087072.1 MGP_AJ_G0033062.1 mouse_genomes_project 7 129111806 129118164 + MGP_AJ_P0087072 Slc5a2 protein_coding nonsense_mediated_decay MGP_AJ_T0087073.1 MGP_AJ_G0033062.1 mouse_genomes_project 7 129111811 129115268 + MGP_AJ_P0087073 Slc5a2 protein_coding protein_coding MGP_AJ_T0087074.1 MGP_AJ_G0033062.1 mouse_genomes_project 7 129111823 129115272 + MGP_AJ_P0087074 Slc5a2 protein_coding protein_coding MGP_AJ_T0087075.1 MGP_AJ_G0033062.1 mouse_genomes_project 7 129112428 129116008 + MGP_AJ_P0087075 Slc5a2 protein_coding protein_coding MGP_AJ_T0087076.1 MGP_AJ_G0033062.1 mouse_genomes_project 7 129112471 129113607 + MGP_AJ_P0087076 Slc5a2 protein_coding nonsense_mediated_decay MGP_AJ_T0087077.1 MGP_AJ_G0033062.1 mouse_genomes_project 7 129112498 129112903 + Slc5a2 protein_coding retained_intron MGP_AJ_T0087078.1 MGP_AJ_G0033062.1 mouse_genomes_project 7 129113086 129115121 + Slc5a2 protein_coding retained_intron MGP_AJ_T0087079.1 MGP_AJ_G0033062.1 mouse_genomes_project 7 129113519 129115931 + MGP_AJ_P0087079 Slc5a2 protein_coding nonsense_mediated_decay MGP_AJ_T0087080.1 MGP_AJ_G0033062.1 mouse_genomes_project 7 129115081 129118131 + MGP_AJ_P0087080 Slc5a2 protein_coding protein_coding MGP_AJ_T0087081.1 MGP_AJ_G0033062.1 mouse_genomes_project 7 129116517 129118131 + MGP_AJ_P0087081 Slc5a2 protein_coding nonsense_mediated_decay MGP_AJ_T0010837.1 MGP_AJ_G0008959.1 mouse_genomes_project 7 16727084 16727149 + Mir3100 miRNA miRNA MGP_AJ_T0087475.1 MGP_AJ_G0033149.1 mouse_genomes_project 7 141100702 141104952 - MGP_AJ_P0087475 Sprn protein_coding protein_coding MGP_AJ_T0087476.1 MGP_AJ_G0033149.1 mouse_genomes_project 7 141101038 141103616 - Sprn protein_coding processed_transcript MGP_AJ_T0102758.1 MGP_AJ_G0040499.1 mouse_genomes_project 7 9206867 9207066 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0083603.1 MGP_AJ_G0032136.1 mouse_genomes_project 7 43654192 43658408 - MGP_AJ_P0083603 Clec11a protein_coding protein_coding MGP_AJ_T0082664.1 MGP_AJ_G0031916.1 mouse_genomes_project 7 26414419 26423532 - MGP_AJ_P0082664 Dll3 protein_coding protein_coding MGP_AJ_T0082665.1 MGP_AJ_G0031916.1 mouse_genomes_project 7 26414465 26415348 - Dll3 protein_coding processed_transcript MGP_AJ_T0082666.1 MGP_AJ_G0031916.1 mouse_genomes_project 7 26419975 26423066 - Dll3 protein_coding retained_intron MGP_AJ_T0010908.1 MGP_AJ_G0009030.1 mouse_genomes_project 7 101777839 101777907 + Mir139 miRNA miRNA MGP_AJ_T0081392.1 MGP_AJ_G0031517.1 mouse_genomes_project 7 1289279 1320435 - MGP_AJ_P0081392 Gp6 protein_coding protein_coding MGP_AJ_T0081393.1 MGP_AJ_G0031517.1 mouse_genomes_project 7 1300262 1320419 - MGP_AJ_P0081393 Gp6 protein_coding protein_coding MGP_AJ_T0015843.1 MGP_AJ_G0013938.1 mouse_genomes_project 7 62353534 62354564 + processed_pseudogene processed_pseudogene MGP_AJ_T0082085.1 MGP_AJ_G0031753.1 mouse_genomes_project 7 17064790 17067210 - MGP_AJ_P0082085 protein_coding protein_coding MGP_AJ_T0100175.1 MGP_AJ_G0038141.1 mouse_genomes_project 7 110651491 110651632 + Gm23100 snRNA snRNA MGP_AJ_T0101862.1 MGP_AJ_G0039746.1 mouse_genomes_project 7 26620990 26629723 + transcribed_processed_pseudogene processed_transcript MGP_AJ_T0101863.1 MGP_AJ_G0039746.1 mouse_genomes_project 7 26628950 26629505 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0081498.1 MGP_AJ_G0031533.1 mouse_genomes_project 7 1689701 1710704 - MGP_AJ_P0081498 Fam71e2 protein_coding nonsense_mediated_decay MGP_AJ_T0081499.1 MGP_AJ_G0031533.1 mouse_genomes_project 7 1689704 1710704 - MGP_AJ_P0081499 Fam71e2 protein_coding protein_coding MGP_AJ_T0087540.1 MGP_AJ_G0033181.1 mouse_genomes_project 7 141882843 141884347 - MGP_AJ_P0087540 Cox8b protein_coding protein_coding MGP_AJ_T0085137.1 MGP_AJ_G0032507.1 mouse_genomes_project 7 98285907 98354830 - MGP_AJ_P0085137 Myo7a protein_coding protein_coding MGP_AJ_T0085138.1 MGP_AJ_G0032507.1 mouse_genomes_project 7 98285910 98304162 - MGP_AJ_P0085138 Myo7a protein_coding nonsense_mediated_decay MGP_AJ_T0085139.1 MGP_AJ_G0032507.1 mouse_genomes_project 7 98286248 98344094 - MGP_AJ_P0085139 Myo7a protein_coding protein_coding MGP_AJ_T0085140.1 MGP_AJ_G0032507.1 mouse_genomes_project 7 98286474 98353039 - MGP_AJ_P0085140 Myo7a protein_coding protein_coding MGP_AJ_T0085141.1 MGP_AJ_G0032507.1 mouse_genomes_project 7 98297434 98299998 - Myo7a protein_coding retained_intron MGP_AJ_T0085142.1 MGP_AJ_G0032507.1 mouse_genomes_project 7 98315935 98319561 - Myo7a protein_coding processed_transcript MGP_AJ_T0085143.1 MGP_AJ_G0032507.1 mouse_genomes_project 7 98332501 98347473 - Myo7a protein_coding processed_transcript MGP_AJ_T0085144.1 MGP_AJ_G0032507.1 mouse_genomes_project 7 98333076 98338230 - Myo7a protein_coding processed_transcript MGP_AJ_T0085145.1 MGP_AJ_G0032507.1 mouse_genomes_project 7 98333116 98338229 - Myo7a protein_coding processed_transcript MGP_AJ_T0085146.1 MGP_AJ_G0032507.1 mouse_genomes_project 7 98333125 98354799 - MGP_AJ_P0085146 Myo7a protein_coding protein_coding MGP_AJ_T0085147.1 MGP_AJ_G0032507.1 mouse_genomes_project 7 98343578 98354798 - Myo7a protein_coding processed_transcript MGP_AJ_T0086279.1 MGP_AJ_G0032910.1 mouse_genomes_project 7 120942276 120993839 + Abca14 protein_coding processed_transcript MGP_AJ_T0086280.1 MGP_AJ_G0032910.1 mouse_genomes_project 7 120942279 121066160 + MGP_AJ_P0086280 Abca14 protein_coding protein_coding MGP_AJ_T0086281.1 MGP_AJ_G0032910.1 mouse_genomes_project 7 120942319 120951342 + Abca14 protein_coding retained_intron MGP_AJ_T0086282.1 MGP_AJ_G0032910.1 mouse_genomes_project 7 120942322 120954645 + Abca14 protein_coding processed_transcript MGP_AJ_T0083506.1 MGP_AJ_G0032106.1 mouse_genomes_project 7 42554598 42562922 + MGP_AJ_P0083506 protein_coding nonsense_mediated_decay MGP_AJ_T0083249.1 MGP_AJ_G0032045.1 mouse_genomes_project 7 32168460 32171134 - MGP_AJ_P0083249 Scgb2b24 protein_coding protein_coding MGP_AJ_T0015809.1 MGP_AJ_G0013904.1 mouse_genomes_project 7 41467078 41467333 + processed_pseudogene processed_pseudogene MGP_AJ_T0015688.1 MGP_AJ_G0013783.1 mouse_genomes_project 7 885898 886178 - processed_pseudogene processed_pseudogene MGP_AJ_T0085154.1 MGP_AJ_G0032510.1 mouse_genomes_project 7 98429342 98436406 - MGP_AJ_P0085154 B3gnt6 protein_coding protein_coding MGP_AJ_T0085148.1 MGP_AJ_G0032508.1 mouse_genomes_project 7 98356860 98412104 - MGP_AJ_P0085148 Capn5 protein_coding protein_coding MGP_AJ_T0085149.1 MGP_AJ_G0032508.1 mouse_genomes_project 7 98358962 98396270 - MGP_AJ_P0085149 Capn5 protein_coding protein_coding MGP_AJ_T0085151.1 MGP_AJ_G0032508.1 mouse_genomes_project 7 98379573 98396138 - Capn5 protein_coding processed_transcript MGP_AJ_T0085152.1 MGP_AJ_G0032508.1 mouse_genomes_project 7 98395908 98398814 - MGP_AJ_P0085152 Capn5 protein_coding protein_coding MGP_AJ_T0085153.1 MGP_AJ_G0032508.1 mouse_genomes_project 7 98395925 98399293 - MGP_AJ_P0085153 Capn5 protein_coding protein_coding MGP_AJ_T0005227.1 MGP_AJ_G0004445.1 mouse_genomes_project 7 78567581 78569786 + Gm9885 antisense antisense MGP_AJ_T0005228.1 MGP_AJ_G0004445.1 mouse_genomes_project 7 78567581 78569790 + Gm9885 antisense antisense MGP_AJ_T0084155.1 MGP_AJ_G0032280.1 mouse_genomes_project 7 49827800 49889131 + MGP_AJ_P0084155 Slc6a5 protein_coding protein_coding MGP_AJ_T0084156.1 MGP_AJ_G0032280.1 mouse_genomes_project 7 49829354 49884755 + MGP_AJ_P0084156 Slc6a5 protein_coding protein_coding MGP_AJ_T0005257.1 MGP_AJ_G0004466.1 mouse_genomes_project 7 97867743 97915059 - Rsf1os2 antisense antisense MGP_AJ_T0005258.1 MGP_AJ_G0004466.1 mouse_genomes_project 7 97911941 97915137 - Rsf1os2 antisense antisense MGP_AJ_T0005259.1 MGP_AJ_G0004466.1 mouse_genomes_project 7 97914398 97915344 - Rsf1os2 antisense antisense MGP_AJ_T0086526.1 MGP_AJ_G0032961.1 mouse_genomes_project 7 127228108 127234492 - Cd19 protein_coding retained_intron MGP_AJ_T0086527.1 MGP_AJ_G0032961.1 mouse_genomes_project 7 127228109 127234513 - MGP_AJ_P0086527 Cd19 protein_coding protein_coding MGP_AJ_T0086528.1 MGP_AJ_G0032961.1 mouse_genomes_project 7 127228109 127234496 - MGP_AJ_P0086528 Cd19 protein_coding protein_coding MGP_AJ_T0086529.1 MGP_AJ_G0032961.1 mouse_genomes_project 7 127229020 127229455 - Cd19 protein_coding retained_intron MGP_AJ_T0086530.1 MGP_AJ_G0032961.1 mouse_genomes_project 7 127233289 127234178 - Cd19 protein_coding retained_intron MGP_AJ_T0084515.1 MGP_AJ_G0032355.1 mouse_genomes_project 7 76166032 77097517 + MGP_AJ_P0084515 Agbl1 protein_coding protein_coding MGP_AJ_T0084516.1 MGP_AJ_G0032355.1 mouse_genomes_project 7 76356490 76664661 + MGP_AJ_P0084516 Agbl1 protein_coding protein_coding MGP_AJ_T0084517.1 MGP_AJ_G0032355.1 mouse_genomes_project 7 76356490 76726067 + MGP_AJ_P0084517 Agbl1 protein_coding protein_coding MGP_AJ_T0008929.1 MGP_AJ_G0007208.1 mouse_genomes_project 7 73550067 73550624 - lincRNA lincRNA MGP_AJ_T0102837.1 MGP_AJ_G0040577.1 mouse_genomes_project 7 46995117 46995572 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0087124.1 MGP_AJ_G0033069.1 mouse_genomes_project 7 129611296 129651702 + MGP_AJ_P0087124 Sec23ip protein_coding protein_coding MGP_AJ_T0087125.1 MGP_AJ_G0033069.1 mouse_genomes_project 7 129611330 129615930 + Sec23ip protein_coding retained_intron MGP_AJ_T0087126.1 MGP_AJ_G0033069.1 mouse_genomes_project 7 129611388 129620488 + MGP_AJ_P0087126 Sec23ip protein_coding nonsense_mediated_decay MGP_AJ_T0087127.1 MGP_AJ_G0033069.1 mouse_genomes_project 7 129611773 129616728 + MGP_AJ_P0087127 Sec23ip protein_coding protein_coding MGP_AJ_T0015887.1 MGP_AJ_G0013982.1 mouse_genomes_project 7 96140929 96141497 - processed_pseudogene processed_pseudogene MGP_AJ_T0009050.1 MGP_AJ_G0007282.1 mouse_genomes_project 7 130794707 130812027 + Gm4265 lincRNA lincRNA MGP_AJ_T0005276.1 MGP_AJ_G0004477.1 mouse_genomes_project 7 121621876 121624462 - antisense antisense MGP_AJ_T0015708.1 MGP_AJ_G0013803.1 mouse_genomes_project 7 10032531 10033213 - processed_pseudogene processed_pseudogene MGP_AJ_T0083393.1 MGP_AJ_G0032075.1 mouse_genomes_project 7 34153548 34225762 - MGP_AJ_P0083393 Dpy19l3 protein_coding protein_coding MGP_AJ_T0083394.1 MGP_AJ_G0032075.1 mouse_genomes_project 7 34159118 34176422 - MGP_AJ_P0083394 Dpy19l3 protein_coding nonsense_mediated_decay MGP_AJ_T0083395.1 MGP_AJ_G0032075.1 mouse_genomes_project 7 34175553 34176895 - Dpy19l3 protein_coding retained_intron MGP_AJ_T0083396.1 MGP_AJ_G0032075.1 mouse_genomes_project 7 34175962 34176981 - Dpy19l3 protein_coding retained_intron MGP_AJ_T0083397.1 MGP_AJ_G0032075.1 mouse_genomes_project 7 34183402 34199691 - MGP_AJ_P0083397 Dpy19l3 protein_coding nonsense_mediated_decay MGP_AJ_T0083398.1 MGP_AJ_G0032075.1 mouse_genomes_project 7 34185211 34193554 - Dpy19l3 protein_coding retained_intron MGP_AJ_T0083399.1 MGP_AJ_G0032075.1 mouse_genomes_project 7 34189520 34195348 - Dpy19l3 protein_coding processed_transcript MGP_AJ_T0083400.1 MGP_AJ_G0032075.1 mouse_genomes_project 7 34195362 34199735 - Dpy19l3 protein_coding retained_intron MGP_AJ_T0083401.1 MGP_AJ_G0032075.1 mouse_genomes_project 7 34199636 34225707 - Dpy19l3 protein_coding processed_transcript MGP_AJ_T0083402.1 MGP_AJ_G0032075.1 mouse_genomes_project 7 34222605 34225663 - Dpy19l3 protein_coding retained_intron MGP_AJ_T0087128.1 MGP_AJ_G0033070.1 mouse_genomes_project 7 130102895 130237909 + MGP_AJ_P0087128 Plpp4 protein_coding protein_coding MGP_AJ_T0087129.1 MGP_AJ_G0033070.1 mouse_genomes_project 7 130102902 130170754 + Plpp4 protein_coding retained_intron MGP_AJ_T0087130.1 MGP_AJ_G0033070.1 mouse_genomes_project 7 130102911 130154116 + Plpp4 protein_coding processed_transcript MGP_AJ_T0087131.1 MGP_AJ_G0033070.1 mouse_genomes_project 7 130102913 130237804 + MGP_AJ_P0087131 Plpp4 protein_coding nonsense_mediated_decay MGP_AJ_T0087132.1 MGP_AJ_G0033070.1 mouse_genomes_project 7 130154095 130237916 + MGP_AJ_P0087132 Plpp4 protein_coding protein_coding MGP_AJ_T0101434.1 MGP_AJ_G0039400.1 mouse_genomes_project 7 99733149 99733294 - Snord15b snoRNA snoRNA MGP_AJ_T0099088.1 MGP_AJ_G0037061.1 mouse_genomes_project 7 72035444 72036484 - sense_intronic sense_intronic MGP_AJ_T0081891.1 MGP_AJ_G0031691.1 mouse_genomes_project 7 14322880 14351112 + MGP_AJ_P0081891 Prkd2 protein_coding protein_coding MGP_AJ_T0081892.1 MGP_AJ_G0031691.1 mouse_genomes_project 7 14323043 14351204 + MGP_AJ_P0081892 Prkd2 protein_coding protein_coding MGP_AJ_T0081893.1 MGP_AJ_G0031691.1 mouse_genomes_project 7 14324139 14329260 + Prkd2 protein_coding processed_transcript MGP_AJ_T0081894.1 MGP_AJ_G0031691.1 mouse_genomes_project 7 14325251 14327652 + Prkd2 protein_coding processed_transcript MGP_AJ_T0081895.1 MGP_AJ_G0031691.1 mouse_genomes_project 7 14325819 14330996 + Prkd2 protein_coding retained_intron MGP_AJ_T0081896.1 MGP_AJ_G0031691.1 mouse_genomes_project 7 14329203 14335190 + Prkd2 protein_coding retained_intron MGP_AJ_T0081897.1 MGP_AJ_G0031691.1 mouse_genomes_project 7 14344061 14350630 + Prkd2 protein_coding retained_intron MGP_AJ_T0081898.1 MGP_AJ_G0031691.1 mouse_genomes_project 7 14349991 14350876 + Prkd2 protein_coding retained_intron MGP_AJ_T0015903.1 MGP_AJ_G0013998.1 mouse_genomes_project 7 103535970 103536633 - processed_pseudogene processed_pseudogene MGP_AJ_T0086261.1 MGP_AJ_G0032903.1 mouse_genomes_project 7 120582631 120625214 - MGP_AJ_P0086261 Dcun1d3 protein_coding protein_coding MGP_AJ_T0086262.1 MGP_AJ_G0032903.1 mouse_genomes_project 7 120585283 120625012 - MGP_AJ_P0086262 Dcun1d3 protein_coding protein_coding MGP_AJ_T0086263.1 MGP_AJ_G0032903.1 mouse_genomes_project 7 120586795 120625760 - MGP_AJ_P0086263 Dcun1d3 protein_coding protein_coding MGP_AJ_T0086264.1 MGP_AJ_G0032903.1 mouse_genomes_project 7 120587462 120591307 - MGP_AJ_P0086264 Dcun1d3 protein_coding protein_coding MGP_AJ_T0086265.1 MGP_AJ_G0032903.1 mouse_genomes_project 7 120589095 120591279 - MGP_AJ_P0086265 Dcun1d3 protein_coding protein_coding MGP_AJ_T0081942.1 MGP_AJ_G0031709.1 mouse_genomes_project 7 15676329 15681689 + MGP_AJ_P0081942 Igfl3 protein_coding protein_coding MGP_AJ_T0081914.1 MGP_AJ_G0031698.1 mouse_genomes_project 7 14474051 14478701 + MGP_AJ_P0081914 Ccdc8 protein_coding protein_coding MGP_AJ_T0087050.1 MGP_AJ_G0033056.1 mouse_genomes_project 7 128995792 129047212 + MGP_AJ_P0087050 Itgad protein_coding protein_coding MGP_AJ_T0087051.1 MGP_AJ_G0033056.1 mouse_genomes_project 7 129015002 129047215 + MGP_AJ_P0087051 Itgad protein_coding protein_coding MGP_AJ_T0087052.1 MGP_AJ_G0033056.1 mouse_genomes_project 7 129015011 129047212 + MGP_AJ_P0087052 Itgad protein_coding protein_coding MGP_AJ_T0087053.1 MGP_AJ_G0033056.1 mouse_genomes_project 7 129045320 129047215 + MGP_AJ_P0087053 Itgad protein_coding protein_coding MGP_AJ_T0087054.1 MGP_AJ_G0033056.1 mouse_genomes_project 7 129045582 129067858 + MGP_AJ_P0087054 Itgad protein_coding protein_coding MGP_AJ_T0002193.1 MGP_AJ_G0002105.1 mouse_genomes_project 7 1590335 1591630 + TEC TEC MGP_AJ_T0085647.1 MGP_AJ_G0032695.1 mouse_genomes_project 7 104886323 104887369 + MGP_AJ_P0085647 Olfr653 protein_coding protein_coding MGP_AJ_T0083187.1 MGP_AJ_G0032035.1 mouse_genomes_project 7 29299964 29303883 - MGP_AJ_P0083187 Fxyd1 protein_coding protein_coding MGP_AJ_T0083188.1 MGP_AJ_G0032035.1 mouse_genomes_project 7 29299964 29303698 - MGP_AJ_P0083188 Fxyd1 protein_coding protein_coding MGP_AJ_T0083189.1 MGP_AJ_G0032035.1 mouse_genomes_project 7 29299966 29301819 - Fxyd1 protein_coding retained_intron MGP_AJ_T0083190.1 MGP_AJ_G0032035.1 mouse_genomes_project 7 29299966 29303956 - MGP_AJ_P0083190 Fxyd1 protein_coding protein_coding MGP_AJ_T0083191.1 MGP_AJ_G0032035.1 mouse_genomes_project 7 29299966 29303087 - MGP_AJ_P0083191 Fxyd1 protein_coding protein_coding MGP_AJ_T0083192.1 MGP_AJ_G0032035.1 mouse_genomes_project 7 29299967 29301409 - MGP_AJ_P0083192 Fxyd1 protein_coding protein_coding MGP_AJ_T0083193.1 MGP_AJ_G0032035.1 mouse_genomes_project 7 29299967 29303945 - MGP_AJ_P0083193 Fxyd1 protein_coding protein_coding MGP_AJ_T0083194.1 MGP_AJ_G0032035.1 mouse_genomes_project 7 29299968 29300480 - Fxyd1 protein_coding retained_intron MGP_AJ_T0083195.1 MGP_AJ_G0032035.1 mouse_genomes_project 7 29299968 29303094 - MGP_AJ_P0083195 Fxyd1 protein_coding protein_coding MGP_AJ_T0083196.1 MGP_AJ_G0032035.1 mouse_genomes_project 7 29299968 29303075 - MGP_AJ_P0083196 Fxyd1 protein_coding protein_coding MGP_AJ_T0083197.1 MGP_AJ_G0032035.1 mouse_genomes_project 7 29299969 29303105 - MGP_AJ_P0083197 Fxyd1 protein_coding protein_coding MGP_AJ_T0083198.1 MGP_AJ_G0032035.1 mouse_genomes_project 7 29299994 29303871 - MGP_AJ_P0083198 Fxyd1 protein_coding protein_coding MGP_AJ_T0083199.1 MGP_AJ_G0032035.1 mouse_genomes_project 7 29300014 29303106 - MGP_AJ_P0083199 Fxyd1 protein_coding protein_coding MGP_AJ_T0083200.1 MGP_AJ_G0032035.1 mouse_genomes_project 7 29300221 29303997 - MGP_AJ_P0083200 Fxyd1 protein_coding protein_coding MGP_AJ_T0083201.1 MGP_AJ_G0032035.1 mouse_genomes_project 7 29300414 29302332 - Fxyd1 protein_coding retained_intron MGP_AJ_T0083202.1 MGP_AJ_G0032035.1 mouse_genomes_project 7 29301775 29303912 - Fxyd1 protein_coding retained_intron MGP_AJ_T0083203.1 MGP_AJ_G0032035.1 mouse_genomes_project 7 29302049 29305402 - Fxyd1 protein_coding retained_intron MGP_AJ_T0082284.1 MGP_AJ_G0031823.1 mouse_genomes_project 7 22701549 22706855 - MGP_AJ_P0082284 Lypd4 protein_coding protein_coding MGP_AJ_T0082285.1 MGP_AJ_G0031823.1 mouse_genomes_project 7 22702254 22706646 - MGP_AJ_P0082285 Lypd4 protein_coding protein_coding MGP_AJ_T0087910.1 MGP_AJ_G0033254.1 mouse_genomes_project 7 144088462 144131539 + MGP_AJ_P0087910 Kcnq1 protein_coding protein_coding MGP_AJ_T0087911.1 MGP_AJ_G0033254.1 mouse_genomes_project 7 144088615 144131539 + MGP_AJ_P0087911 Kcnq1 protein_coding protein_coding MGP_AJ_T0087912.1 MGP_AJ_G0033254.1 mouse_genomes_project 7 144088845 144131539 + MGP_AJ_P0087912 Kcnq1 protein_coding protein_coding MGP_AJ_T0087913.1 MGP_AJ_G0033254.1 mouse_genomes_project 7 144089354 144409821 + MGP_AJ_P0087913 Kcnq1 protein_coding protein_coding MGP_AJ_T0087914.1 MGP_AJ_G0033254.1 mouse_genomes_project 7 144089651 144408904 + MGP_AJ_P0087914 Kcnq1 protein_coding protein_coding MGP_AJ_T0087915.1 MGP_AJ_G0033254.1 mouse_genomes_project 7 144090451 144131539 + MGP_AJ_P0087915 Kcnq1 protein_coding protein_coding MGP_AJ_T0087916.1 MGP_AJ_G0033254.1 mouse_genomes_project 7 144091294 144131539 + MGP_AJ_P0087916 Kcnq1 protein_coding protein_coding MGP_AJ_T0084859.1 MGP_AJ_G0032418.1 mouse_genomes_project 7 81976987 82031290 - MGP_AJ_P0084859 Hdgfrp3 protein_coding protein_coding MGP_AJ_T0084860.1 MGP_AJ_G0032418.1 mouse_genomes_project 7 81987720 82031276 - MGP_AJ_P0084860 Hdgfrp3 protein_coding protein_coding MGP_AJ_T0084861.1 MGP_AJ_G0032418.1 mouse_genomes_project 7 81993058 82030841 - Hdgfrp3 protein_coding retained_intron MGP_AJ_T0002265.1 MGP_AJ_G0002176.1 mouse_genomes_project 7 76566113 76567064 + TEC TEC MGP_AJ_T0086325.1 MGP_AJ_G0032923.1 mouse_genomes_project 7 121819649 121830102 - MGP_AJ_P0086325 Igsf6 protein_coding protein_coding MGP_AJ_T0082373.1 MGP_AJ_G0031839.1 mouse_genomes_project 7 23141299 23144233 - MGP_AJ_P0082373 Pafah1b3 protein_coding protein_coding MGP_AJ_T0082374.1 MGP_AJ_G0031839.1 mouse_genomes_project 7 23141307 23142961 - Pafah1b3 protein_coding retained_intron MGP_AJ_T0082375.1 MGP_AJ_G0031839.1 mouse_genomes_project 7 23141617 23144141 - MGP_AJ_P0082375 Pafah1b3 protein_coding protein_coding MGP_AJ_T0082376.1 MGP_AJ_G0031839.1 mouse_genomes_project 7 23142224 23144196 - MGP_AJ_P0082376 Pafah1b3 protein_coding protein_coding MGP_AJ_T0082377.1 MGP_AJ_G0031839.1 mouse_genomes_project 7 23142878 23144180 - Pafah1b3 protein_coding retained_intron MGP_AJ_T0082378.1 MGP_AJ_G0031839.1 mouse_genomes_project 7 23143132 23144193 - Pafah1b3 protein_coding processed_transcript MGP_AJ_T0085815.1 MGP_AJ_G0032774.1 mouse_genomes_project 7 107758629 107792418 + MGP_AJ_P0085815 Nlrp14 protein_coding protein_coding MGP_AJ_T0085816.1 MGP_AJ_G0032774.1 mouse_genomes_project 7 107779143 107792427 + MGP_AJ_P0085816 Nlrp14 protein_coding protein_coding MGP_AJ_T0086339.1 MGP_AJ_G0032929.1 mouse_genomes_project 7 122668195 122670969 - Cog7 protein_coding retained_intron MGP_AJ_T0086340.1 MGP_AJ_G0032929.1 mouse_genomes_project 7 122668486 122774807 - MGP_AJ_P0086340 Cog7 protein_coding protein_coding MGP_AJ_T0086342.1 MGP_AJ_G0032929.1 mouse_genomes_project 7 122713638 122774807 - MGP_AJ_P0086342 Cog7 protein_coding protein_coding MGP_AJ_T0086343.1 MGP_AJ_G0032929.1 mouse_genomes_project 7 122719803 122774790 - Cog7 protein_coding retained_intron MGP_AJ_T0010889.1 MGP_AJ_G0009011.1 mouse_genomes_project 7 61924976 61925044 - Mir344f miRNA miRNA MGP_AJ_T0100156.1 MGP_AJ_G0038122.1 mouse_genomes_project 7 69360146 69360253 - Gm23815 snRNA snRNA MGP_AJ_T0005172.1 MGP_AJ_G0004403.1 mouse_genomes_project 7 25266452 25275123 - Gm15567 antisense antisense MGP_AJ_T0015919.1 MGP_AJ_G0014014.1 mouse_genomes_project 7 117212266 117212554 - processed_pseudogene processed_pseudogene MGP_AJ_T0084100.1 MGP_AJ_G0032260.1 mouse_genomes_project 7 46506130 46561977 - MGP_AJ_P0084100 Ptpn5 protein_coding protein_coding MGP_AJ_T0084101.1 MGP_AJ_G0032260.1 mouse_genomes_project 7 46506134 46560971 - MGP_AJ_P0084101 Ptpn5 protein_coding protein_coding MGP_AJ_T0102866.1 MGP_AJ_G0040606.1 mouse_genomes_project 7 85175918 85775489 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0010868.1 MGP_AJ_G0008990.1 mouse_genomes_project 7 47355716 47355826 + Gm22427 miRNA miRNA MGP_AJ_T0015700.1 MGP_AJ_G0013795.1 mouse_genomes_project 7 2903355 2904304 - processed_pseudogene processed_pseudogene MGP_AJ_T0015915.1 MGP_AJ_G0014010.1 mouse_genomes_project 7 111185292 111185622 + processed_pseudogene processed_pseudogene MGP_AJ_T0102808.1 MGP_AJ_G0040548.1 mouse_genomes_project 7 32226143 32226969 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0015917.1 MGP_AJ_G0014012.1 mouse_genomes_project 7 115406262 115407387 - processed_pseudogene processed_pseudogene MGP_AJ_T0082043.1 MGP_AJ_G0031744.1 mouse_genomes_project 7 16919838 16923092 - MGP_AJ_P0082043 Ppm1n protein_coding protein_coding MGP_AJ_T0082044.1 MGP_AJ_G0031744.1 mouse_genomes_project 7 16919875 16921429 - Ppm1n protein_coding retained_intron MGP_AJ_T0082045.1 MGP_AJ_G0031744.1 mouse_genomes_project 7 16920848 16921183 - Ppm1n protein_coding retained_intron MGP_AJ_T0082046.1 MGP_AJ_G0031744.1 mouse_genomes_project 7 16921844 16922629 - Ppm1n protein_coding retained_intron MGP_AJ_T0081614.1 MGP_AJ_G0031588.1 mouse_genomes_project 7 3696049 3722579 - MGP_AJ_P0081614 Peg3 protein_coding protein_coding MGP_AJ_T0081615.1 MGP_AJ_G0031588.1 mouse_genomes_project 7 3701552 3722577 - MGP_AJ_P0081615 Peg3 protein_coding nonsense_mediated_decay MGP_AJ_T0081616.1 MGP_AJ_G0031588.1 mouse_genomes_project 7 3703853 3715373 - MGP_AJ_P0081616 Peg3 protein_coding nonsense_mediated_decay MGP_AJ_T0081617.1 MGP_AJ_G0031588.1 mouse_genomes_project 7 3714090 3722577 - Peg3 protein_coding retained_intron MGP_AJ_T0085235.1 MGP_AJ_G0032531.1 mouse_genomes_project 7 100076636 100096579 - MGP_AJ_P0085235 Neu3 protein_coding protein_coding MGP_AJ_T0015872.1 MGP_AJ_G0013967.1 mouse_genomes_project 7 83064729 83065047 - processed_pseudogene processed_pseudogene MGP_AJ_T0085327.1 MGP_AJ_G0032554.1 mouse_genomes_project 7 101289117 101304746 - MGP_AJ_P0085327 P2ry2 protein_coding protein_coding MGP_AJ_T0085328.1 MGP_AJ_G0032554.1 mouse_genomes_project 7 101289770 101304731 - MGP_AJ_P0085328 P2ry2 protein_coding protein_coding MGP_AJ_T0083983.1 MGP_AJ_G0032228.1 mouse_genomes_project 7 45215358 45223498 - MGP_AJ_P0083983 Kcnj14 protein_coding protein_coding MGP_AJ_T0082473.1 MGP_AJ_G0031863.1 mouse_genomes_project 7 24184477 24185598 + MGP_AJ_P0082473 protein_coding protein_coding MGP_AJ_T0084182.1 MGP_AJ_G0032290.1 mouse_genomes_project 7 55713251 55717608 + MGP_AJ_P0084182 Siglech protein_coding nonsense_mediated_decay MGP_AJ_T0084183.1 MGP_AJ_G0032290.1 mouse_genomes_project 7 55713257 55718561 + MGP_AJ_P0084183 Siglech protein_coding protein_coding MGP_AJ_T0084184.1 MGP_AJ_G0032290.1 mouse_genomes_project 7 55713257 55718561 + MGP_AJ_P0084184 Siglech protein_coding protein_coding MGP_AJ_T0084185.1 MGP_AJ_G0032290.1 mouse_genomes_project 7 55713299 55723888 + MGP_AJ_P0084185 Siglech protein_coding protein_coding MGP_AJ_T0084186.1 MGP_AJ_G0032290.1 mouse_genomes_project 7 55713299 55723689 + MGP_AJ_P0084186 Siglech protein_coding protein_coding MGP_AJ_T0084187.1 MGP_AJ_G0032290.1 mouse_genomes_project 7 55713309 55722673 + MGP_AJ_P0084187 Siglech protein_coding protein_coding MGP_AJ_T0084188.1 MGP_AJ_G0032290.1 mouse_genomes_project 7 55713309 55722627 + MGP_AJ_P0084188 Siglech protein_coding protein_coding MGP_AJ_T0084189.1 MGP_AJ_G0032290.1 mouse_genomes_project 7 55713334 55723980 + MGP_AJ_P0084189 Siglech protein_coding nonsense_mediated_decay MGP_AJ_T0010861.1 MGP_AJ_G0008983.1 mouse_genomes_project 7 43895283 43895356 - Mir7053 miRNA miRNA MGP_AJ_T0015807.1 MGP_AJ_G0013902.1 mouse_genomes_project 7 41225416 41225538 - processed_pseudogene processed_pseudogene MGP_AJ_T0081764.1 MGP_AJ_G0031651.1 mouse_genomes_project 7 11165597 11244663 - MGP_AJ_P0081764 protein_coding protein_coding MGP_AJ_T0008850.1 MGP_AJ_G0007148.1 mouse_genomes_project 7 35609318 35617936 - Gm28078 lincRNA lincRNA MGP_AJ_T0098470.1 MGP_AJ_G0036454.1 mouse_genomes_project 7 108750498 108751442 - pseudogene pseudogene MGP_AJ_T0085002.1 MGP_AJ_G0032478.1 mouse_genomes_project 7 90412315 90452035 - MGP_AJ_P0085002 Ccdc83 protein_coding protein_coding MGP_AJ_T0085003.1 MGP_AJ_G0032478.1 mouse_genomes_project 7 90422683 90452035 - MGP_AJ_P0085003 Ccdc83 protein_coding protein_coding MGP_AJ_T0085004.1 MGP_AJ_G0032478.1 mouse_genomes_project 7 90424036 90452035 - MGP_AJ_P0085004 Ccdc83 protein_coding protein_coding MGP_AJ_T0085542.1 MGP_AJ_G0032622.1 mouse_genomes_project 7 103554699 103555644 - MGP_AJ_P0085542 Olfr591 protein_coding protein_coding MGP_AJ_T0015727.1 MGP_AJ_G0013822.1 mouse_genomes_project 7 14170228 14170781 - processed_pseudogene processed_pseudogene MGP_AJ_T0084929.1 MGP_AJ_G0032440.1 mouse_genomes_project 7 85038675 85058971 - MGP_AJ_P0084929 Vmn2r65 protein_coding protein_coding MGP_AJ_T0084894.1 MGP_AJ_G0032428.1 mouse_genomes_project 7 83721225 83731579 + MGP_AJ_P0084894 Stard5 protein_coding protein_coding MGP_AJ_T0084895.1 MGP_AJ_G0032428.1 mouse_genomes_project 7 83721266 83722737 + Stard5 protein_coding retained_intron MGP_AJ_T0084896.1 MGP_AJ_G0032428.1 mouse_genomes_project 7 83721266 83742388 + MGP_AJ_P0084896 Stard5 protein_coding protein_coding MGP_AJ_T0084897.1 MGP_AJ_G0032428.1 mouse_genomes_project 7 83721282 83727342 + Stard5 protein_coding retained_intron MGP_AJ_T0084898.1 MGP_AJ_G0032428.1 mouse_genomes_project 7 83721818 83722621 + Stard5 protein_coding processed_transcript MGP_AJ_T0015877.1 MGP_AJ_G0013972.1 mouse_genomes_project 7 86476923 86477173 - processed_pseudogene processed_pseudogene MGP_AJ_T0102887.1 MGP_AJ_G0040627.1 mouse_genomes_project 7 86734829 86735526 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0015837.1 MGP_AJ_G0013932.1 mouse_genomes_project 7 56792666 56793086 - processed_pseudogene processed_pseudogene MGP_AJ_T0086307.1 MGP_AJ_G0032917.1 mouse_genomes_project 7 121591649 121656808 + MGP_AJ_P0086307 Eef2k protein_coding protein_coding MGP_AJ_T0086308.1 MGP_AJ_G0032917.1 mouse_genomes_project 7 121592418 121653594 + MGP_AJ_P0086308 Eef2k protein_coding protein_coding MGP_AJ_T0086309.1 MGP_AJ_G0032917.1 mouse_genomes_project 7 121592436 121607561 + MGP_AJ_P0086309 Eef2k protein_coding protein_coding MGP_AJ_T0086310.1 MGP_AJ_G0032917.1 mouse_genomes_project 7 121600074 121649871 + MGP_AJ_P0086310 Eef2k protein_coding protein_coding MGP_AJ_T0086311.1 MGP_AJ_G0032917.1 mouse_genomes_project 7 121600074 121629712 + MGP_AJ_P0086311 Eef2k protein_coding protein_coding MGP_AJ_T0086312.1 MGP_AJ_G0032917.1 mouse_genomes_project 7 121600086 121653001 + MGP_AJ_P0086312 Eef2k protein_coding protein_coding MGP_AJ_T0086313.1 MGP_AJ_G0032917.1 mouse_genomes_project 7 121625386 121629252 + Eef2k protein_coding retained_intron MGP_AJ_T0086314.1 MGP_AJ_G0032917.1 mouse_genomes_project 7 121639098 121644792 + MGP_AJ_P0086314 Eef2k protein_coding protein_coding MGP_AJ_T0086315.1 MGP_AJ_G0032917.1 mouse_genomes_project 7 121641261 121653083 + Eef2k protein_coding processed_transcript MGP_AJ_T0085831.1 MGP_AJ_G0032783.1 mouse_genomes_project 7 108507142 108508225 + MGP_AJ_P0085831 Olfr472 protein_coding protein_coding MGP_AJ_T0087603.1 MGP_AJ_G0033200.1 mouse_genomes_project 7 142219374 142254364 + MGP_AJ_P0087603 Phrf1 protein_coding nonsense_mediated_decay MGP_AJ_T0087604.1 MGP_AJ_G0033200.1 mouse_genomes_project 7 142219379 142254248 + MGP_AJ_P0087604 Phrf1 protein_coding protein_coding MGP_AJ_T0087605.1 MGP_AJ_G0033200.1 mouse_genomes_project 7 142225749 142238955 + MGP_AJ_P0087605 Phrf1 protein_coding protein_coding MGP_AJ_T0087606.1 MGP_AJ_G0033200.1 mouse_genomes_project 7 142235136 142254217 + MGP_AJ_P0087606 Phrf1 protein_coding protein_coding MGP_AJ_T0087607.1 MGP_AJ_G0033200.1 mouse_genomes_project 7 142246535 142249691 + Phrf1 protein_coding processed_transcript MGP_AJ_T0087608.1 MGP_AJ_G0033200.1 mouse_genomes_project 7 142247624 142249451 + Phrf1 protein_coding retained_intron MGP_AJ_T0087609.1 MGP_AJ_G0033200.1 mouse_genomes_project 7 142247625 142248508 + Phrf1 protein_coding retained_intron MGP_AJ_T0087610.1 MGP_AJ_G0033200.1 mouse_genomes_project 7 142250811 142254372 + MGP_AJ_P0087610 Phrf1 protein_coding protein_coding MGP_AJ_T0087611.1 MGP_AJ_G0033200.1 mouse_genomes_project 7 142251279 142252209 + Phrf1 protein_coding processed_transcript MGP_AJ_T0087612.1 MGP_AJ_G0033200.1 mouse_genomes_project 7 142252018 142254369 + MGP_AJ_P0087612 Phrf1 protein_coding protein_coding MGP_AJ_T0087613.1 MGP_AJ_G0033200.1 mouse_genomes_project 7 142253300 142254322 + Phrf1 protein_coding processed_transcript MGP_AJ_T0085596.1 MGP_AJ_G0032672.1 mouse_genomes_project 7 104470699 104471644 - MGP_AJ_P0085596 Olfr642 protein_coding protein_coding MGP_AJ_T0084876.1 MGP_AJ_G0032422.1 mouse_genomes_project 7 82722885 82738448 - MGP_AJ_P0084876 Saxo2 protein_coding protein_coding MGP_AJ_T0084877.1 MGP_AJ_G0032422.1 mouse_genomes_project 7 82724389 82738354 - MGP_AJ_P0084877 Saxo2 protein_coding unknown_likely_coding MGP_AJ_T0084878.1 MGP_AJ_G0032422.1 mouse_genomes_project 7 82725213 82738448 - Saxo2 protein_coding processed_transcript MGP_AJ_T0084879.1 MGP_AJ_G0032422.1 mouse_genomes_project 7 82732064 82738453 - Saxo2 protein_coding retained_intron MGP_AJ_T0084880.1 MGP_AJ_G0032422.1 mouse_genomes_project 7 82736091 82738453 - Saxo2 protein_coding processed_transcript MGP_AJ_T0082416.1 MGP_AJ_G0031850.1 mouse_genomes_project 7 23487203 23488975 + MGP_AJ_P0082416 B3gnt8 protein_coding protein_coding MGP_AJ_T0082417.1 MGP_AJ_G0031850.1 mouse_genomes_project 7 23488186 23495650 + MGP_AJ_P0082417 B3gnt8 protein_coding nonsense_mediated_decay MGP_AJ_T0082418.1 MGP_AJ_G0031850.1 mouse_genomes_project 7 23488187 23490042 + MGP_AJ_P0082418 B3gnt8 protein_coding protein_coding MGP_AJ_T0082419.1 MGP_AJ_G0031850.1 mouse_genomes_project 7 23488191 23490035 + B3gnt8 protein_coding retained_intron MGP_AJ_T0002293.1 MGP_AJ_G0002204.1 mouse_genomes_project 7 122629115 122630745 - TEC TEC MGP_AJ_T0008990.1 MGP_AJ_G0007245.1 mouse_genomes_project 7 109590298 109601066 - Gm26599 lincRNA lincRNA MGP_AJ_T0085789.1 MGP_AJ_G0032749.1 mouse_genomes_project 7 107279760 107280712 - MGP_AJ_P0085789 Olfr693 protein_coding protein_coding MGP_AJ_T0085847.1 MGP_AJ_G0032799.1 mouse_genomes_project 7 108973871 108974816 - MGP_AJ_P0085847 Olfr493 protein_coding protein_coding MGP_AJ_T0015824.1 MGP_AJ_G0013919.1 mouse_genomes_project 7 46245112 46246037 - processed_pseudogene processed_pseudogene MGP_AJ_T0081698.1 MGP_AJ_G0031633.1 mouse_genomes_project 7 10233088 10244737 - MGP_AJ_P0081698 Slc27a5 protein_coding unknown_likely_coding MGP_AJ_T0081699.1 MGP_AJ_G0031633.1 mouse_genomes_project 7 10233091 10233860 - Slc27a5 protein_coding processed_transcript MGP_AJ_T0081700.1 MGP_AJ_G0031633.1 mouse_genomes_project 7 10233091 10244999 - MGP_AJ_P0081700 Slc27a5 protein_coding protein_coding MGP_AJ_T0081701.1 MGP_AJ_G0031633.1 mouse_genomes_project 7 10233097 10245041 - MGP_AJ_P0081701 Slc27a5 protein_coding protein_coding MGP_AJ_T0081702.1 MGP_AJ_G0031633.1 mouse_genomes_project 7 10239558 10243655 - Slc27a5 protein_coding retained_intron MGP_AJ_T0081703.1 MGP_AJ_G0031633.1 mouse_genomes_project 7 10239558 10244526 - MGP_AJ_P0081703 Slc27a5 protein_coding protein_coding MGP_AJ_T0015795.1 MGP_AJ_G0013890.1 mouse_genomes_project 7 38288255 38288849 - processed_pseudogene processed_pseudogene MGP_AJ_T0086272.1 MGP_AJ_G0032906.1 mouse_genomes_project 7 120837770 120856922 + MGP_AJ_P0086272 Tmem159 protein_coding protein_coding MGP_AJ_T0086273.1 MGP_AJ_G0032906.1 mouse_genomes_project 7 120837789 120840634 + Tmem159 protein_coding retained_intron MGP_AJ_T0086274.1 MGP_AJ_G0032906.1 mouse_genomes_project 7 120838302 120856928 + MGP_AJ_P0086274 Tmem159 protein_coding protein_coding MGP_AJ_T0083260.1 MGP_AJ_G0032051.1 mouse_genomes_project 7 32563288 32591369 - MGP_AJ_P0083260 Uba2 protein_coding protein_coding MGP_AJ_T0083261.1 MGP_AJ_G0032051.1 mouse_genomes_project 7 32563314 32564687 - Uba2 protein_coding retained_intron MGP_AJ_T0083262.1 MGP_AJ_G0032051.1 mouse_genomes_project 7 32563683 32567149 - MGP_AJ_P0083262 Uba2 protein_coding protein_coding MGP_AJ_T0083263.1 MGP_AJ_G0032051.1 mouse_genomes_project 7 32563990 32565870 - Uba2 protein_coding retained_intron MGP_AJ_T0083264.1 MGP_AJ_G0032051.1 mouse_genomes_project 7 32565029 32569484 - Uba2 protein_coding retained_intron MGP_AJ_T0083265.1 MGP_AJ_G0032051.1 mouse_genomes_project 7 32574183 32584514 - MGP_AJ_P0083265 Uba2 protein_coding nonsense_mediated_decay MGP_AJ_T0083266.1 MGP_AJ_G0032051.1 mouse_genomes_project 7 32577186 32580452 - Uba2 protein_coding retained_intron MGP_AJ_T0083267.1 MGP_AJ_G0032051.1 mouse_genomes_project 7 32577768 32587212 - MGP_AJ_P0083267 Uba2 protein_coding nonsense_mediated_decay MGP_AJ_T0083268.1 MGP_AJ_G0032051.1 mouse_genomes_project 7 32584460 32592393 - MGP_AJ_P0083268 Uba2 protein_coding protein_coding MGP_AJ_T0083269.1 MGP_AJ_G0032051.1 mouse_genomes_project 7 32585793 32587135 - Uba2 protein_coding retained_intron MGP_AJ_T0098467.1 MGP_AJ_G0036451.1 mouse_genomes_project 7 82088268 82088882 + pseudogene pseudogene MGP_AJ_T0082353.1 MGP_AJ_G0031836.1 mouse_genomes_project 7 23074373 23083967 - MGP_AJ_P0082353 Gsk3a protein_coding protein_coding MGP_AJ_T0082354.1 MGP_AJ_G0031836.1 mouse_genomes_project 7 23074373 23083967 - MGP_AJ_P0082354 Gsk3a protein_coding protein_coding MGP_AJ_T0082355.1 MGP_AJ_G0031836.1 mouse_genomes_project 7 23075580 23077360 - Gsk3a protein_coding retained_intron MGP_AJ_T0085691.1 MGP_AJ_G0032732.1 mouse_genomes_project 7 105832649 105877651 + MGP_AJ_P0085691 Cckbr protein_coding protein_coding MGP_AJ_T0085692.1 MGP_AJ_G0032732.1 mouse_genomes_project 7 105832652 105843172 + MGP_AJ_P0085692 Cckbr protein_coding protein_coding MGP_AJ_T0084954.1 MGP_AJ_G0032463.1 mouse_genomes_project 7 87433870 87497561 + MGP_AJ_P0084954 Nox4 protein_coding protein_coding MGP_AJ_T0084955.1 MGP_AJ_G0032463.1 mouse_genomes_project 7 87434425 87500906 + Nox4 protein_coding retained_intron MGP_AJ_T0084956.1 MGP_AJ_G0032463.1 mouse_genomes_project 7 87434425 87481707 + Nox4 protein_coding processed_transcript MGP_AJ_T0084957.1 MGP_AJ_G0032463.1 mouse_genomes_project 7 87434425 87581500 + MGP_AJ_P0084957 Nox4 protein_coding protein_coding MGP_AJ_T0084958.1 MGP_AJ_G0032463.1 mouse_genomes_project 7 87434425 87584347 + MGP_AJ_P0084958 Nox4 protein_coding nonsense_mediated_decay MGP_AJ_T0084959.1 MGP_AJ_G0032463.1 mouse_genomes_project 7 87434425 87577983 + MGP_AJ_P0084959 Nox4 protein_coding nonsense_mediated_decay MGP_AJ_T0084960.1 MGP_AJ_G0032463.1 mouse_genomes_project 7 87434425 87584347 + MGP_AJ_P0084960 Nox4 protein_coding protein_coding MGP_AJ_T0084961.1 MGP_AJ_G0032463.1 mouse_genomes_project 7 87434588 87583977 + MGP_AJ_P0084961 Nox4 protein_coding nonsense_mediated_decay MGP_AJ_T0085714.1 MGP_AJ_G0032736.1 mouse_genomes_project 7 106001067 106009969 - MGP_AJ_P0085714 Hpx protein_coding protein_coding MGP_AJ_T0085598.1 MGP_AJ_G0032674.1 mouse_genomes_project 7 104489221 104490166 - MGP_AJ_P0085598 protein_coding protein_coding MGP_AJ_T0008913.1 MGP_AJ_G0007194.1 mouse_genomes_project 7 71835572 71850015 - Gm36633 lincRNA lincRNA MGP_AJ_T0081925.1 MGP_AJ_G0031700.1 mouse_genomes_project 7 14512660 14544956 - MGP_AJ_P0081925 Hif3a protein_coding protein_coding MGP_AJ_T0081926.1 MGP_AJ_G0031700.1 mouse_genomes_project 7 14516880 14539182 - MGP_AJ_P0081926 Hif3a protein_coding protein_coding MGP_AJ_T0081927.1 MGP_AJ_G0031700.1 mouse_genomes_project 7 14530483 14532916 - MGP_AJ_P0081927 Hif3a protein_coding protein_coding MGP_AJ_T0081928.1 MGP_AJ_G0031700.1 mouse_genomes_project 7 14534251 14544913 - MGP_AJ_P0081928 Hif3a protein_coding protein_coding MGP_AJ_T0085645.1 MGP_AJ_G0032694.1 mouse_genomes_project 7 104871065 104872126 + MGP_AJ_P0085645 Olfr652 protein_coding protein_coding MGP_AJ_T0085646.1 MGP_AJ_G0032694.1 mouse_genomes_project 7 104871145 104872093 + MGP_AJ_P0085646 Olfr652 protein_coding protein_coding MGP_AJ_T0084925.1 MGP_AJ_G0032437.1 mouse_genomes_project 7 84719328 84781224 - MGP_AJ_P0084925 Zfand6 protein_coding protein_coding MGP_AJ_T0084926.1 MGP_AJ_G0032437.1 mouse_genomes_project 7 84719328 84781234 - MGP_AJ_P0084926 Zfand6 protein_coding protein_coding MGP_AJ_T0085511.1 MGP_AJ_G0032593.1 mouse_genomes_project 7 102963039 102963993 + MGP_AJ_P0085511 Olfr552 protein_coding protein_coding MGP_AJ_T0085925.1 MGP_AJ_G0032835.1 mouse_genomes_project 7 110621731 110633972 - MGP_AJ_P0085925 Tmem41b protein_coding protein_coding MGP_AJ_T0085926.1 MGP_AJ_G0032835.1 mouse_genomes_project 7 110622362 110626820 - Tmem41b protein_coding retained_intron MGP_AJ_T0085927.1 MGP_AJ_G0032835.1 mouse_genomes_project 7 110624483 110634165 - MGP_AJ_P0085927 Tmem41b protein_coding nonsense_mediated_decay MGP_AJ_T0085928.1 MGP_AJ_G0032835.1 mouse_genomes_project 7 110624483 110634052 - MGP_AJ_P0085928 Tmem41b protein_coding nonsense_mediated_decay MGP_AJ_T0085929.1 MGP_AJ_G0032835.1 mouse_genomes_project 7 110624550 110634139 - MGP_AJ_P0085929 Tmem41b protein_coding nonsense_mediated_decay MGP_AJ_T0085930.1 MGP_AJ_G0032835.1 mouse_genomes_project 7 110627880 110634149 - Tmem41b protein_coding retained_intron MGP_AJ_T0085659.1 MGP_AJ_G0032707.1 mouse_genomes_project 7 105271427 105272408 - MGP_AJ_P0085659 Olfr667 protein_coding protein_coding MGP_AJ_T0082060.1 MGP_AJ_G0031748.1 mouse_genomes_project 7 17000663 17003299 - MGP_AJ_P0082060 Cd3eap protein_coding protein_coding MGP_AJ_T0082061.1 MGP_AJ_G0031748.1 mouse_genomes_project 7 17002655 17003301 - Cd3eap protein_coding retained_intron MGP_AJ_T0086828.1 MGP_AJ_G0033010.1 mouse_genomes_project 7 128064646 128069669 + MGP_AJ_P0086828 Zfp553 protein_coding protein_coding MGP_AJ_T0086829.1 MGP_AJ_G0033010.1 mouse_genomes_project 7 128064837 128069533 + MGP_AJ_P0086829 Zfp553 protein_coding protein_coding MGP_AJ_T0086830.1 MGP_AJ_G0033010.1 mouse_genomes_project 7 128064876 128065703 + Zfp553 protein_coding retained_intron MGP_AJ_T0087332.1 MGP_AJ_G0033110.1 mouse_genomes_project 7 135188478 135293453 - MGP_AJ_P0087332 D7Ertd443e protein_coding protein_coding MGP_AJ_T0087333.1 MGP_AJ_G0033110.1 mouse_genomes_project 7 135188491 135268716 - MGP_AJ_P0087333 D7Ertd443e protein_coding protein_coding MGP_AJ_T0087334.1 MGP_AJ_G0033110.1 mouse_genomes_project 7 135188829 135286121 - MGP_AJ_P0087334 D7Ertd443e protein_coding protein_coding MGP_AJ_T0087335.1 MGP_AJ_G0033110.1 mouse_genomes_project 7 135189030 135191057 - D7Ertd443e protein_coding retained_intron MGP_AJ_T0087336.1 MGP_AJ_G0033110.1 mouse_genomes_project 7 135189030 135275646 - MGP_AJ_P0087336 D7Ertd443e protein_coding protein_coding MGP_AJ_T0087337.1 MGP_AJ_G0033110.1 mouse_genomes_project 7 135276282 135305377 - MGP_AJ_P0087337 D7Ertd443e protein_coding protein_coding MGP_AJ_T0087338.1 MGP_AJ_G0033110.1 mouse_genomes_project 7 135276403 135305371 - MGP_AJ_P0087338 D7Ertd443e protein_coding protein_coding MGP_AJ_T0087339.1 MGP_AJ_G0033110.1 mouse_genomes_project 7 135282097 135314207 - D7Ertd443e protein_coding processed_transcript MGP_AJ_T0102854.1 MGP_AJ_G0040594.1 mouse_genomes_project 7 48150019 48150599 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0082471.1 MGP_AJ_G0031861.1 mouse_genomes_project 7 23952165 23988113 + MGP_AJ_P0082471 Cyp2b13 protein_coding protein_coding MGP_AJ_T0081560.1 MGP_AJ_G0031561.1 mouse_genomes_project 7 2108510 2109794 - MGP_AJ_P0081560 Vmn1r55 protein_coding protein_coding MGP_AJ_T0083867.1 MGP_AJ_G0032198.1 mouse_genomes_project 7 44800371 44803857 + MGP_AJ_P0083867 Ntf5 protein_coding protein_coding MGP_AJ_T0010898.1 MGP_AJ_G0009020.1 mouse_genomes_project 7 78007668 78007762 - Gm44358 miRNA miRNA MGP_AJ_T0015858.1 MGP_AJ_G0013953.1 mouse_genomes_project 7 74754022 74754152 - processed_pseudogene processed_pseudogene MGP_AJ_T0085187.1 MGP_AJ_G0032516.1 mouse_genomes_project 7 98942376 98957316 + MGP_AJ_P0085187 Prkrir protein_coding protein_coding MGP_AJ_T0085188.1 MGP_AJ_G0032516.1 mouse_genomes_project 7 98942376 98954621 + MGP_AJ_P0085188 Prkrir protein_coding nonsense_mediated_decay MGP_AJ_T0085189.1 MGP_AJ_G0032516.1 mouse_genomes_project 7 98942601 98954367 + MGP_AJ_P0085189 Prkrir protein_coding nonsense_mediated_decay MGP_AJ_T0085190.1 MGP_AJ_G0032516.1 mouse_genomes_project 7 98949130 98954511 + Prkrir protein_coding processed_transcript MGP_AJ_T0087583.1 MGP_AJ_G0033196.1 mouse_genomes_project 7 142179695 142184551 - MGP_AJ_P0087583 Hras protein_coding protein_coding MGP_AJ_T0087584.1 MGP_AJ_G0033196.1 mouse_genomes_project 7 142180524 142184595 - MGP_AJ_P0087584 Hras protein_coding protein_coding MGP_AJ_T0087585.1 MGP_AJ_G0033196.1 mouse_genomes_project 7 142181516 142184585 - Hras protein_coding retained_intron MGP_AJ_T0087586.1 MGP_AJ_G0033196.1 mouse_genomes_project 7 142181516 142184596 - MGP_AJ_P0087586 Hras protein_coding protein_coding MGP_AJ_T0087587.1 MGP_AJ_G0033196.1 mouse_genomes_project 7 142181517 142183095 - Hras protein_coding processed_transcript MGP_AJ_T0087588.1 MGP_AJ_G0033196.1 mouse_genomes_project 7 142181520 142182568 - Hras protein_coding processed_transcript MGP_AJ_T0087589.1 MGP_AJ_G0033196.1 mouse_genomes_project 7 142181520 142184473 - MGP_AJ_P0087589 Hras protein_coding nonsense_mediated_decay MGP_AJ_T0082735.1 MGP_AJ_G0031935.1 mouse_genomes_project 7 26888561 26900745 + MGP_AJ_P0082735 Sars2 protein_coding protein_coding MGP_AJ_T0008808.1 MGP_AJ_G0007110.1 mouse_genomes_project 7 360773 384442 + Gm44160 lincRNA lincRNA MGP_AJ_T0005226.1 MGP_AJ_G0004444.1 mouse_genomes_project 7 78243088 78244214 + 4921513I08Rik antisense antisense MGP_AJ_T0100178.1 MGP_AJ_G0038144.1 mouse_genomes_project 7 119015743 119015848 + Gm23229 snRNA snRNA MGP_AJ_T0086061.1 MGP_AJ_G0032865.1 mouse_genomes_project 7 115126023 115253432 + MGP_AJ_P0086061 Pde3b protein_coding protein_coding MGP_AJ_T0086062.1 MGP_AJ_G0032865.1 mouse_genomes_project 7 115218019 115222644 + Pde3b protein_coding retained_intron MGP_AJ_T0086063.1 MGP_AJ_G0032865.1 mouse_genomes_project 7 115235934 115245198 + Pde3b protein_coding retained_intron MGP_AJ_T0015892.1 MGP_AJ_G0013987.1 mouse_genomes_project 7 97872010 97872488 - processed_pseudogene processed_pseudogene MGP_AJ_T0081715.1 MGP_AJ_G0031636.1 mouse_genomes_project 7 10280307 10283083 - MGP_AJ_P0081715 Chmp2a protein_coding protein_coding MGP_AJ_T0010938.1 MGP_AJ_G0009060.1 mouse_genomes_project 7 144929631 144929725 + Mir6404 miRNA miRNA MGP_AJ_T0008867.1 MGP_AJ_G0007159.1 mouse_genomes_project 7 39081056 39173721 - Gm28807 lincRNA lincRNA MGP_AJ_T0083565.1 MGP_AJ_G0032126.1 mouse_genomes_project 7 42910986 42915362 + MGP_AJ_P0083565 Klk10 protein_coding protein_coding MGP_AJ_T0098727.1 MGP_AJ_G0036711.1 mouse_genomes_project 7 90482384 90482497 + n-R5s155 rRNA rRNA MGP_AJ_T0010936.1 MGP_AJ_G0009058.1 mouse_genomes_project 7 144552833 144552922 - Mir7064 miRNA miRNA MGP_AJ_T0086150.1 MGP_AJ_G0032877.1 mouse_genomes_project 7 118839954 118851772 - MGP_AJ_P0086150 Rps15a protein_coding protein_coding MGP_AJ_T0086151.1 MGP_AJ_G0032877.1 mouse_genomes_project 7 118839960 118850840 - MGP_AJ_P0086151 Rps15a protein_coding protein_coding MGP_AJ_T0086152.1 MGP_AJ_G0032877.1 mouse_genomes_project 7 118844645 118851261 - MGP_AJ_P0086152 Rps15a protein_coding protein_coding MGP_AJ_T0086153.1 MGP_AJ_G0032877.1 mouse_genomes_project 7 118844750 118851138 - MGP_AJ_P0086153 Rps15a protein_coding protein_coding MGP_AJ_T0086154.1 MGP_AJ_G0032877.1 mouse_genomes_project 7 118845244 118850812 - Rps15a protein_coding retained_intron MGP_AJ_T0086155.1 MGP_AJ_G0032877.1 mouse_genomes_project 7 118845579 118851713 - MGP_AJ_P0086155 Rps15a protein_coding protein_coding MGP_AJ_T0086156.1 MGP_AJ_G0032877.1 mouse_genomes_project 7 118850368 118851712 - MGP_AJ_P0086156 Rps15a protein_coding protein_coding MGP_AJ_T0084275.1 MGP_AJ_G0032309.1 mouse_genomes_project 7 62963559 63078210 - MGP_AJ_P0084275 Chrna7 protein_coding protein_coding MGP_AJ_T0085469.1 MGP_AJ_G0032579.1 mouse_genomes_project 7 102462149 102469553 - MGP_AJ_P0085469 Chrna10 protein_coding protein_coding MGP_AJ_T0102067.1 MGP_AJ_G0039849.1 mouse_genomes_project 7 15165557 15174957 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_AJ_T0102068.1 MGP_AJ_G0039849.1 mouse_genomes_project 7 15165557 15175326 + transcribed_unprocessed_pseudogene processed_transcript MGP_AJ_T0085833.1 MGP_AJ_G0032785.1 mouse_genomes_project 7 108554277 108555210 + MGP_AJ_P0085833 Olfr474 protein_coding protein_coding MGP_AJ_T0083543.1 MGP_AJ_G0032117.1 mouse_genomes_project 7 42706561 42720005 + MGP_AJ_P0083543 Zfp719 protein_coding protein_coding MGP_AJ_T0083544.1 MGP_AJ_G0032117.1 mouse_genomes_project 7 42706570 42716344 + MGP_AJ_P0083544 Zfp719 protein_coding protein_coding MGP_AJ_T0083545.1 MGP_AJ_G0032117.1 mouse_genomes_project 7 42706590 42711277 + Zfp719 protein_coding retained_intron MGP_AJ_T0085500.1 MGP_AJ_G0032583.1 mouse_genomes_project 7 102623017 102794703 + MGP_AJ_P0085500 Stim1 protein_coding protein_coding MGP_AJ_T0008823.1 MGP_AJ_G0007123.1 mouse_genomes_project 7 22250640 22253603 + Gm44512 lincRNA lincRNA MGP_AJ_T0082181.1 MGP_AJ_G0031789.1 mouse_genomes_project 7 21665229 21666201 + MGP_AJ_P0082181 Vmn1r179 protein_coding protein_coding MGP_AJ_T0085603.1 MGP_AJ_G0032679.1 mouse_genomes_project 7 104565893 104568191 - MGP_AJ_P0085603 Ubqlnl protein_coding protein_coding MGP_AJ_T0015849.1 MGP_AJ_G0013944.1 mouse_genomes_project 7 67627040 67628045 - processed_pseudogene processed_pseudogene MGP_AJ_T0081729.1 MGP_AJ_G0031640.1 mouse_genomes_project 7 10358987 10359938 - MGP_AJ_P0081729 Vmn1r86 protein_coding protein_coding MGP_AJ_T0102743.1 MGP_AJ_G0040484.1 mouse_genomes_project 7 7230551 7248854 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0009008.1 MGP_AJ_G0007253.1 mouse_genomes_project 7 117267991 117270091 + Gm45151 lincRNA lincRNA MGP_AJ_T0015889.1 MGP_AJ_G0013984.1 mouse_genomes_project 7 97616874 97617061 + processed_pseudogene processed_pseudogene MGP_AJ_T0083208.1 MGP_AJ_G0032037.1 mouse_genomes_project 7 29316864 29325411 - MGP_AJ_P0083208 Fxyd3 protein_coding protein_coding MGP_AJ_T0083209.1 MGP_AJ_G0032037.1 mouse_genomes_project 7 29319230 29320984 - Fxyd3 protein_coding retained_intron MGP_AJ_T0083210.1 MGP_AJ_G0032037.1 mouse_genomes_project 7 29319232 29325362 - Fxyd3 protein_coding retained_intron MGP_AJ_T0083211.1 MGP_AJ_G0032037.1 mouse_genomes_project 7 29319232 29319734 - Fxyd3 protein_coding retained_intron MGP_AJ_T0083212.1 MGP_AJ_G0032037.1 mouse_genomes_project 7 29319232 29320148 - Fxyd3 protein_coding retained_intron MGP_AJ_T0083213.1 MGP_AJ_G0032037.1 mouse_genomes_project 7 29319233 29325376 - MGP_AJ_P0083213 Fxyd3 protein_coding protein_coding MGP_AJ_T0083214.1 MGP_AJ_G0032037.1 mouse_genomes_project 7 29319234 29320746 - Fxyd3 protein_coding retained_intron MGP_AJ_T0083215.1 MGP_AJ_G0032037.1 mouse_genomes_project 7 29319579 29323658 - MGP_AJ_P0083215 Fxyd3 protein_coding protein_coding MGP_AJ_T0083216.1 MGP_AJ_G0032037.1 mouse_genomes_project 7 29320234 29325361 - Fxyd3 protein_coding retained_intron MGP_AJ_T0083217.1 MGP_AJ_G0032037.1 mouse_genomes_project 7 29320710 29325352 - Fxyd3 protein_coding retained_intron MGP_AJ_T0083218.1 MGP_AJ_G0032037.1 mouse_genomes_project 7 29321713 29325370 - Fxyd3 protein_coding retained_intron MGP_AJ_T0085472.1 MGP_AJ_G0032581.1 mouse_genomes_project 7 102564729 102578204 + Pgap2 protein_coding processed_transcript MGP_AJ_T0085473.1 MGP_AJ_G0032581.1 mouse_genomes_project 7 102564856 102581825 + MGP_AJ_P0085473 Pgap2 protein_coding protein_coding MGP_AJ_T0085474.1 MGP_AJ_G0032581.1 mouse_genomes_project 7 102564880 102593983 + MGP_AJ_P0085474 Pgap2 protein_coding protein_coding MGP_AJ_T0085475.1 MGP_AJ_G0032581.1 mouse_genomes_project 7 102564890 102581885 + MGP_AJ_P0085475 Pgap2 protein_coding protein_coding MGP_AJ_T0085476.1 MGP_AJ_G0032581.1 mouse_genomes_project 7 102565042 102575694 + Pgap2 protein_coding processed_transcript MGP_AJ_T0085477.1 MGP_AJ_G0032581.1 mouse_genomes_project 7 102565053 102591878 + Pgap2 protein_coding retained_intron MGP_AJ_T0085478.1 MGP_AJ_G0032581.1 mouse_genomes_project 7 102577160 102591584 + MGP_AJ_P0085478 Pgap2 protein_coding protein_coding MGP_AJ_T0085479.1 MGP_AJ_G0032581.1 mouse_genomes_project 7 102577364 102592645 + MGP_AJ_P0085479 Pgap2 protein_coding protein_coding MGP_AJ_T0085480.1 MGP_AJ_G0032581.1 mouse_genomes_project 7 102577748 102593983 + MGP_AJ_P0085480 Pgap2 protein_coding protein_coding MGP_AJ_T0085481.1 MGP_AJ_G0032581.1 mouse_genomes_project 7 102577765 102592643 + MGP_AJ_P0085481 Pgap2 protein_coding protein_coding MGP_AJ_T0085482.1 MGP_AJ_G0032581.1 mouse_genomes_project 7 102577770 102593193 + MGP_AJ_P0085482 Pgap2 protein_coding nonsense_mediated_decay MGP_AJ_T0085483.1 MGP_AJ_G0032581.1 mouse_genomes_project 7 102577773 102591650 + MGP_AJ_P0085483 Pgap2 protein_coding protein_coding MGP_AJ_T0085484.1 MGP_AJ_G0032581.1 mouse_genomes_project 7 102577789 102593179 + MGP_AJ_P0085484 Pgap2 protein_coding protein_coding MGP_AJ_T0085485.1 MGP_AJ_G0032581.1 mouse_genomes_project 7 102577791 102582551 + Pgap2 protein_coding retained_intron MGP_AJ_T0085486.1 MGP_AJ_G0032581.1 mouse_genomes_project 7 102577792 102593079 + Pgap2 protein_coding processed_transcript MGP_AJ_T0085487.1 MGP_AJ_G0032581.1 mouse_genomes_project 7 102577795 102581794 + MGP_AJ_P0085487 Pgap2 protein_coding protein_coding MGP_AJ_T0085488.1 MGP_AJ_G0032581.1 mouse_genomes_project 7 102577798 102591835 + Pgap2 protein_coding retained_intron MGP_AJ_T0085489.1 MGP_AJ_G0032581.1 mouse_genomes_project 7 102577804 102593037 + MGP_AJ_P0085489 Pgap2 protein_coding nonsense_mediated_decay MGP_AJ_T0085490.1 MGP_AJ_G0032581.1 mouse_genomes_project 7 102577805 102593150 + MGP_AJ_P0085490 Pgap2 protein_coding nonsense_mediated_decay MGP_AJ_T0085491.1 MGP_AJ_G0032581.1 mouse_genomes_project 7 102577813 102593976 + Pgap2 protein_coding processed_transcript MGP_AJ_T0085492.1 MGP_AJ_G0032581.1 mouse_genomes_project 7 102578002 102591715 + MGP_AJ_P0085492 Pgap2 protein_coding protein_coding MGP_AJ_T0085493.1 MGP_AJ_G0032581.1 mouse_genomes_project 7 102581257 102591752 + MGP_AJ_P0085493 Pgap2 protein_coding protein_coding MGP_AJ_T0085494.1 MGP_AJ_G0032581.1 mouse_genomes_project 7 102581270 102592969 + MGP_AJ_P0085494 Pgap2 protein_coding nonsense_mediated_decay MGP_AJ_T0085495.1 MGP_AJ_G0032581.1 mouse_genomes_project 7 102585434 102593976 + MGP_AJ_P0085495 Pgap2 protein_coding protein_coding MGP_AJ_T0085496.1 MGP_AJ_G0032581.1 mouse_genomes_project 7 102591270 102592947 + MGP_AJ_P0085496 Pgap2 protein_coding protein_coding MGP_AJ_T0085497.1 MGP_AJ_G0032581.1 mouse_genomes_project 7 102591319 102593071 + Pgap2 protein_coding retained_intron MGP_AJ_T0102880.1 MGP_AJ_G0040620.1 mouse_genomes_project 7 86131987 86132364 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0087289.1 MGP_AJ_G0033102.1 mouse_genomes_project 7 134506157 134522304 - MGP_AJ_P0087289 Tex36 protein_coding protein_coding MGP_AJ_T0100193.1 MGP_AJ_G0038159.1 mouse_genomes_project 7 142094426 142094535 - Gm24962 snRNA snRNA MGP_AJ_T0085606.1 MGP_AJ_G0032681.1 mouse_genomes_project 7 104594569 104595520 - MGP_AJ_P0085606 Olfr648 protein_coding protein_coding MGP_AJ_T0015779.1 MGP_AJ_G0013874.1 mouse_genomes_project 7 31857131 31857266 + processed_pseudogene processed_pseudogene MGP_AJ_T0005268.1 MGP_AJ_G0004472.1 mouse_genomes_project 7 113210491 113219204 - Parvaos antisense antisense MGP_AJ_T0015910.1 MGP_AJ_G0014005.1 mouse_genomes_project 7 107793071 107794518 - processed_pseudogene processed_pseudogene MGP_AJ_T0015696.1 MGP_AJ_G0013791.1 mouse_genomes_project 7 1543064 1543815 - processed_pseudogene processed_pseudogene MGP_AJ_T0015808.1 MGP_AJ_G0013903.1 mouse_genomes_project 7 41440217 41440699 - processed_pseudogene processed_pseudogene MGP_AJ_T0010833.1 MGP_AJ_G0008955.1 mouse_genomes_project 7 2090676 2090754 - Gm26217 miRNA miRNA MGP_AJ_T0082336.1 MGP_AJ_G0031832.1 mouse_genomes_project 7 22912056 22916507 + Zfp574 protein_coding processed_transcript MGP_AJ_T0082337.1 MGP_AJ_G0031832.1 mouse_genomes_project 7 22912135 22916866 + Zfp574 protein_coding processed_transcript MGP_AJ_T0082338.1 MGP_AJ_G0031832.1 mouse_genomes_project 7 22916695 22922983 + MGP_AJ_P0082338 Zfp574 protein_coding protein_coding MGP_AJ_T0082339.1 MGP_AJ_G0031832.1 mouse_genomes_project 7 22916774 22921971 + MGP_AJ_P0082339 Zfp574 protein_coding protein_coding MGP_AJ_T0015718.1 MGP_AJ_G0013813.1 mouse_genomes_project 7 11210507 11221467 - processed_pseudogene processed_pseudogene MGP_AJ_T0088003.1 MGP_AJ_G0033277.1 mouse_genomes_project 7 145941082 145957467 + MGP_AJ_P0088003 Oraov1 protein_coding protein_coding MGP_AJ_T0088004.1 MGP_AJ_G0033277.1 mouse_genomes_project 7 145941118 145947956 + MGP_AJ_P0088004 Oraov1 protein_coding protein_coding MGP_AJ_T0088005.1 MGP_AJ_G0033277.1 mouse_genomes_project 7 145941154 145943685 + Oraov1 protein_coding retained_intron MGP_AJ_T0088006.1 MGP_AJ_G0033277.1 mouse_genomes_project 7 145941156 145942441 + Oraov1 protein_coding processed_transcript MGP_AJ_T0088007.1 MGP_AJ_G0033277.1 mouse_genomes_project 7 145941163 145956205 + MGP_AJ_P0088007 Oraov1 protein_coding protein_coding MGP_AJ_T0088008.1 MGP_AJ_G0033277.1 mouse_genomes_project 7 145942119 145946651 + Oraov1 protein_coding retained_intron MGP_AJ_T0002275.1 MGP_AJ_G0002186.1 mouse_genomes_project 7 79522163 79522500 + TEC TEC MGP_AJ_T0005306.1 MGP_AJ_G0004500.1 mouse_genomes_project 7 141821312 141829777 - C330022C24Rik antisense antisense MGP_AJ_T0082827.1 MGP_AJ_G0031956.1 mouse_genomes_project 7 27408866 27418080 + MGP_AJ_P0082827 Yif1b protein_coding protein_coding MGP_AJ_T0082828.1 MGP_AJ_G0031956.1 mouse_genomes_project 7 27408890 27418080 + MGP_AJ_P0082828 Yif1b protein_coding protein_coding MGP_AJ_T0082829.1 MGP_AJ_G0031956.1 mouse_genomes_project 7 27408906 27415376 + MGP_AJ_P0082829 Yif1b protein_coding protein_coding MGP_AJ_T0082830.1 MGP_AJ_G0031956.1 mouse_genomes_project 7 27408989 27418144 + MGP_AJ_P0082830 Yif1b protein_coding protein_coding MGP_AJ_T0082831.1 MGP_AJ_G0031956.1 mouse_genomes_project 7 27409010 27416529 + Yif1b protein_coding processed_transcript MGP_AJ_T0102741.1 MGP_AJ_G0040482.1 mouse_genomes_project 7 822328 824093 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0015813.1 MGP_AJ_G0013908.1 mouse_genomes_project 7 42001358 42002147 - processed_pseudogene processed_pseudogene MGP_AJ_T0102901.1 MGP_AJ_G0040641.1 mouse_genomes_project 7 104386442 104387397 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0087208.1 MGP_AJ_G0033085.1 mouse_genomes_project 7 132284863 132301060 + MGP_AJ_P0087208 Pstk protein_coding protein_coding MGP_AJ_T0087209.1 MGP_AJ_G0033085.1 mouse_genomes_project 7 132284868 132301057 + MGP_AJ_P0087209 Pstk protein_coding nonsense_mediated_decay MGP_AJ_T0087210.1 MGP_AJ_G0033085.1 mouse_genomes_project 7 132284879 132287986 + Pstk protein_coding processed_transcript MGP_AJ_T0087211.1 MGP_AJ_G0033085.1 mouse_genomes_project 7 132286757 132301054 + Pstk protein_coding retained_intron MGP_AJ_T0087212.1 MGP_AJ_G0033085.1 mouse_genomes_project 7 132297145 132301057 + Pstk protein_coding processed_transcript MGP_AJ_T0087213.1 MGP_AJ_G0033085.1 mouse_genomes_project 7 132297477 132300948 + Pstk protein_coding retained_intron MGP_AJ_T0087214.1 MGP_AJ_G0033085.1 mouse_genomes_project 7 132297718 132301053 + Pstk protein_coding processed_transcript MGP_AJ_T0081603.1 MGP_AJ_G0031579.1 mouse_genomes_project 7 3428522 3429583 + MGP_AJ_P0081603 Olfr1344 protein_coding protein_coding MGP_AJ_T0081544.1 MGP_AJ_G0031553.1 mouse_genomes_project 7 1997698 2001708 - MGP_AJ_P0081544 Zfp784 protein_coding protein_coding MGP_AJ_T0086552.1 MGP_AJ_G0032966.1 mouse_genomes_project 7 127308093 127311665 + MGP_AJ_P0086552 protein_coding protein_coding MGP_AJ_T0081394.1 MGP_AJ_G0031518.1 mouse_genomes_project 7 1349106 1370007 - MGP_AJ_P0081394 Rdh13 protein_coding nonsense_mediated_decay MGP_AJ_T0081395.1 MGP_AJ_G0031518.1 mouse_genomes_project 7 1350003 1370055 - MGP_AJ_P0081395 Rdh13 protein_coding protein_coding MGP_AJ_T0081396.1 MGP_AJ_G0031518.1 mouse_genomes_project 7 1359033 1369587 - MGP_AJ_P0081396 Rdh13 protein_coding protein_coding MGP_AJ_T0081397.1 MGP_AJ_G0031518.1 mouse_genomes_project 7 1364403 1369999 - Rdh13 protein_coding retained_intron MGP_AJ_T0081398.1 MGP_AJ_G0031518.1 mouse_genomes_project 7 1366647 1370048 - Rdh13 protein_coding processed_transcript MGP_AJ_T0081399.1 MGP_AJ_G0031518.1 mouse_genomes_project 7 1368198 1370032 - Rdh13 protein_coding processed_transcript MGP_AJ_T0087042.1 MGP_AJ_G0033054.1 mouse_genomes_project 7 128908551 128969713 + MGP_AJ_P0087042 Itgam protein_coding protein_coding MGP_AJ_T0087046.1 MGP_AJ_G0033054.1 mouse_genomes_project 7 128961074 128968767 + MGP_AJ_P0087046 Itgam protein_coding protein_coding MGP_AJ_T0084472.1 MGP_AJ_G0032348.1 mouse_genomes_project 7 73296992 73420088 - MGP_AJ_P0084472 Chd2 protein_coding protein_coding MGP_AJ_T0084473.1 MGP_AJ_G0032348.1 mouse_genomes_project 7 73297048 73339863 - MGP_AJ_P0084473 Chd2 protein_coding nonsense_mediated_decay MGP_AJ_T0084474.1 MGP_AJ_G0032348.1 mouse_genomes_project 7 73300342 73318105 - MGP_AJ_P0084474 Chd2 protein_coding protein_coding MGP_AJ_T0084475.1 MGP_AJ_G0032348.1 mouse_genomes_project 7 73320115 73326464 - MGP_AJ_P0084475 Chd2 protein_coding nonsense_mediated_decay MGP_AJ_T0084476.1 MGP_AJ_G0032348.1 mouse_genomes_project 7 73322684 73332610 - Chd2 protein_coding processed_transcript MGP_AJ_T0084477.1 MGP_AJ_G0032348.1 mouse_genomes_project 7 73345896 73352323 - Chd2 protein_coding processed_transcript MGP_AJ_T0084478.1 MGP_AJ_G0032348.1 mouse_genomes_project 7 73345902 73352325 - MGP_AJ_P0084478 Chd2 protein_coding protein_coding MGP_AJ_T0084479.1 MGP_AJ_G0032348.1 mouse_genomes_project 7 73345903 73350149 - Chd2 protein_coding retained_intron MGP_AJ_T0084480.1 MGP_AJ_G0032348.1 mouse_genomes_project 7 73375871 73380282 - MGP_AJ_P0084480 Chd2 protein_coding nonsense_mediated_decay MGP_AJ_T0084481.1 MGP_AJ_G0032348.1 mouse_genomes_project 7 73377806 73380201 - MGP_AJ_P0084481 Chd2 protein_coding protein_coding MGP_AJ_T0084482.1 MGP_AJ_G0032348.1 mouse_genomes_project 7 73379144 73420087 - MGP_AJ_P0084482 Chd2 protein_coding protein_coding MGP_AJ_T0084483.1 MGP_AJ_G0032348.1 mouse_genomes_project 7 73380102 73381733 - Chd2 protein_coding retained_intron MGP_AJ_T0084484.1 MGP_AJ_G0032348.1 mouse_genomes_project 7 73386027 73415964 - MGP_AJ_P0084484 Chd2 protein_coding protein_coding MGP_AJ_T0084485.1 MGP_AJ_G0032348.1 mouse_genomes_project 7 73386057 73420078 - MGP_AJ_P0084485 Chd2 protein_coding protein_coding MGP_AJ_T0084486.1 MGP_AJ_G0032348.1 mouse_genomes_project 7 73416432 73420172 - Chd2 protein_coding retained_intron MGP_AJ_T0084487.1 MGP_AJ_G0032348.1 mouse_genomes_project 7 73417696 73420088 - Chd2 protein_coding processed_transcript MGP_AJ_T0084488.1 MGP_AJ_G0032348.1 mouse_genomes_project 7 73418140 73419867 - Chd2 protein_coding processed_transcript MGP_AJ_T0087501.1 MGP_AJ_G0033172.1 mouse_genomes_project 7 141759269 141769895 - MGP_AJ_P0087501 Syce1 protein_coding protein_coding MGP_AJ_T0082086.1 MGP_AJ_G0031754.1 mouse_genomes_project 7 17071823 17103975 - MGP_AJ_P0082086 Mark4 protein_coding protein_coding MGP_AJ_T0082087.1 MGP_AJ_G0031754.1 mouse_genomes_project 7 17072095 17103975 - MGP_AJ_P0082087 Mark4 protein_coding unknown_likely_coding MGP_AJ_T0010927.1 MGP_AJ_G0009049.1 mouse_genomes_project 7 140735242 140735349 + Mir6401 miRNA miRNA MGP_AJ_T0085442.1 MGP_AJ_G0032572.1 mouse_genomes_project 7 102363180 102366257 - MGP_AJ_P0085442 Il18bp protein_coding protein_coding MGP_AJ_T0100148.1 MGP_AJ_G0038114.1 mouse_genomes_project 7 45274261 45274346 - Gm22098 snRNA snRNA MGP_AJ_T0083933.1 MGP_AJ_G0032215.1 mouse_genomes_project 7 45034076 45039880 + Mamstr protein_coding retained_intron MGP_AJ_T0083934.1 MGP_AJ_G0032215.1 mouse_genomes_project 7 45034076 45035093 + Mamstr protein_coding retained_intron MGP_AJ_T0083935.1 MGP_AJ_G0032215.1 mouse_genomes_project 7 45034092 45039322 + MGP_AJ_P0083935 Mamstr protein_coding protein_coding MGP_AJ_T0083936.1 MGP_AJ_G0032215.1 mouse_genomes_project 7 45035582 45040632 + Mamstr protein_coding retained_intron MGP_AJ_T0083937.1 MGP_AJ_G0032215.1 mouse_genomes_project 7 45035878 45039852 + Mamstr protein_coding retained_intron MGP_AJ_T0083938.1 MGP_AJ_G0032215.1 mouse_genomes_project 7 45038494 45039120 + MGP_AJ_P0083938 Mamstr protein_coding protein_coding MGP_AJ_T0082047.1 MGP_AJ_G0031745.1 mouse_genomes_project 7 16925689 16939115 + MGP_AJ_P0082047 Rtn2 protein_coding protein_coding MGP_AJ_T0082048.1 MGP_AJ_G0031745.1 mouse_genomes_project 7 16934095 16939110 + MGP_AJ_P0082048 Rtn2 protein_coding protein_coding MGP_AJ_T0015911.1 MGP_AJ_G0014006.1 mouse_genomes_project 7 108470138 108470600 + processed_pseudogene processed_pseudogene MGP_AJ_T0087590.1 MGP_AJ_G0033197.1 mouse_genomes_project 7 142184769 142191525 + Lrrc56 protein_coding retained_intron MGP_AJ_T0087591.1 MGP_AJ_G0033197.1 mouse_genomes_project 7 142185733 142188874 + Lrrc56 protein_coding processed_transcript MGP_AJ_T0087592.1 MGP_AJ_G0033197.1 mouse_genomes_project 7 142187524 142190422 + Lrrc56 protein_coding processed_transcript MGP_AJ_T0087593.1 MGP_AJ_G0033197.1 mouse_genomes_project 7 142187583 142200333 + MGP_AJ_P0087593 Lrrc56 protein_coding protein_coding MGP_AJ_T0015940.1 MGP_AJ_G0014035.1 mouse_genomes_project 7 128862612 128863391 - processed_pseudogene processed_pseudogene MGP_AJ_T0083806.1 MGP_AJ_G0032186.1 mouse_genomes_project 7 44555806 44556650 + MGP_AJ_P0083806 Pth2 protein_coding protein_coding MGP_AJ_T0085826.1 MGP_AJ_G0032779.1 mouse_genomes_project 7 108200291 108201482 - MGP_AJ_P0085826 5330417H12Rik protein_coding protein_coding MGP_AJ_T0082528.1 MGP_AJ_G0031881.1 mouse_genomes_project 7 25209643 25220512 + MGP_AJ_P0082528 BC024978 protein_coding protein_coding MGP_AJ_T0082529.1 MGP_AJ_G0031881.1 mouse_genomes_project 7 25218823 25220512 + MGP_AJ_P0082529 BC024978 protein_coding protein_coding MGP_AJ_T0081704.1 MGP_AJ_G0031634.1 mouse_genomes_project 7 10251566 10256392 - MGP_AJ_P0081704 Zbtb45 protein_coding protein_coding MGP_AJ_T0081705.1 MGP_AJ_G0031634.1 mouse_genomes_project 7 10252257 10256370 - MGP_AJ_P0081705 Zbtb45 protein_coding protein_coding MGP_AJ_T0083616.1 MGP_AJ_G0032139.1 mouse_genomes_project 7 43736135 43751811 + MGP_AJ_P0083616 Syt3 protein_coding protein_coding MGP_AJ_T0083617.1 MGP_AJ_G0032139.1 mouse_genomes_project 7 43736160 43737473 + Syt3 protein_coding processed_transcript MGP_AJ_T0083618.1 MGP_AJ_G0032139.1 mouse_genomes_project 7 43736187 43751969 + MGP_AJ_P0083618 Syt3 protein_coding protein_coding MGP_AJ_T0083619.1 MGP_AJ_G0032139.1 mouse_genomes_project 7 43736637 43738075 + MGP_AJ_P0083619 Syt3 protein_coding protein_coding MGP_AJ_T0083620.1 MGP_AJ_G0032139.1 mouse_genomes_project 7 43736637 43738145 + MGP_AJ_P0083620 Syt3 protein_coding protein_coding MGP_AJ_T0083621.1 MGP_AJ_G0032139.1 mouse_genomes_project 7 43736901 43751545 + MGP_AJ_P0083621 Syt3 protein_coding protein_coding MGP_AJ_T0086298.1 MGP_AJ_G0032915.1 mouse_genomes_project 7 121419383 121477856 + MGP_AJ_P0086298 BC030336 protein_coding protein_coding MGP_AJ_T0008954.1 MGP_AJ_G0007223.1 mouse_genomes_project 7 80194426 80196031 + Gm45202 lincRNA lincRNA MGP_AJ_T0002219.1 MGP_AJ_G0002131.1 mouse_genomes_project 7 41683400 41683525 - TEC TEC MGP_AJ_T0100184.1 MGP_AJ_G0038150.1 mouse_genomes_project 7 127385465 127385572 - Gm24596 snRNA snRNA MGP_AJ_T0082988.1 MGP_AJ_G0031993.1 mouse_genomes_project 7 28566286 28573568 - MGP_AJ_P0082988 Lrfn3 protein_coding protein_coding MGP_AJ_T0100134.1 MGP_AJ_G0038100.1 mouse_genomes_project 7 10175072 10175180 + Gm26325 snRNA snRNA MGP_AJ_T0099094.1 MGP_AJ_G0037066.1 mouse_genomes_project 7 123815949 123817083 + sense_intronic sense_intronic MGP_AJ_T0082617.1 MGP_AJ_G0031898.1 mouse_genomes_project 7 25688896 25692316 + MGP_AJ_P0082617 Ttc9b protein_coding protein_coding MGP_AJ_T0086185.1 MGP_AJ_G0032885.1 mouse_genomes_project 7 119433111 119450378 - MGP_AJ_P0086185 Gde1 protein_coding protein_coding MGP_AJ_T0086186.1 MGP_AJ_G0032885.1 mouse_genomes_project 7 119436183 119449980 - MGP_AJ_P0086186 Gde1 protein_coding protein_coding MGP_AJ_T0101409.1 MGP_AJ_G0039375.1 mouse_genomes_project 7 44499503 44499587 - Snord33 snoRNA snoRNA MGP_AJ_T0086788.1 MGP_AJ_G0033002.1 mouse_genomes_project 7 127879603 127882123 - MGP_AJ_P0086788 Zg16 protein_coding protein_coding MGP_AJ_T0086789.1 MGP_AJ_G0033002.1 mouse_genomes_project 7 127879603 127881425 - MGP_AJ_P0086789 Zg16 protein_coding protein_coding MGP_AJ_T0086790.1 MGP_AJ_G0033002.1 mouse_genomes_project 7 127879923 127916954 - MGP_AJ_P0086790 Zg16 protein_coding protein_coding MGP_AJ_T0086791.1 MGP_AJ_G0033002.1 mouse_genomes_project 7 127893140 127916912 - Zg16 protein_coding processed_transcript MGP_AJ_T0085854.1 MGP_AJ_G0032806.1 mouse_genomes_project 7 109193699 109194656 - MGP_AJ_P0085854 protein_coding protein_coding MGP_AJ_T0087343.1 MGP_AJ_G0033114.1 mouse_genomes_project 7 136332873 136336076 + MGP_AJ_P0087343 protein_coding protein_coding MGP_AJ_T0010900.1 MGP_AJ_G0009022.1 mouse_genomes_project 7 79514368 79514458 + Mir9-3 miRNA miRNA MGP_AJ_T0083678.1 MGP_AJ_G0032148.1 mouse_genomes_project 7 43906714 43910785 - MGP_AJ_P0083678 Nr1h2 protein_coding protein_coding MGP_AJ_T0083679.1 MGP_AJ_G0032148.1 mouse_genomes_project 7 43906714 43911048 - MGP_AJ_P0083679 Nr1h2 protein_coding protein_coding MGP_AJ_T0083680.1 MGP_AJ_G0032148.1 mouse_genomes_project 7 43906715 43911047 - MGP_AJ_P0083680 Nr1h2 protein_coding protein_coding MGP_AJ_T0083681.1 MGP_AJ_G0032148.1 mouse_genomes_project 7 43906733 43911022 - MGP_AJ_P0083681 Nr1h2 protein_coding protein_coding MGP_AJ_T0083682.1 MGP_AJ_G0032148.1 mouse_genomes_project 7 43906750 43911022 - MGP_AJ_P0083682 Nr1h2 protein_coding protein_coding MGP_AJ_T0083683.1 MGP_AJ_G0032148.1 mouse_genomes_project 7 43907400 43911010 - Nr1h2 protein_coding retained_intron MGP_AJ_T0083684.1 MGP_AJ_G0032148.1 mouse_genomes_project 7 43907472 43908722 - Nr1h2 protein_coding retained_intron MGP_AJ_T0083685.1 MGP_AJ_G0032148.1 mouse_genomes_project 7 43908155 43911050 - Nr1h2 protein_coding retained_intron MGP_AJ_T0083686.1 MGP_AJ_G0032148.1 mouse_genomes_project 7 43908238 43908970 - Nr1h2 protein_coding retained_intron MGP_AJ_T0083687.1 MGP_AJ_G0032148.1 mouse_genomes_project 7 43909307 43909686 - Nr1h2 protein_coding retained_intron MGP_AJ_T0083688.1 MGP_AJ_G0032148.1 mouse_genomes_project 7 43909592 43911022 - Nr1h2 protein_coding retained_intron MGP_AJ_T0083689.1 MGP_AJ_G0032148.1 mouse_genomes_project 7 43909691 43910311 - Nr1h2 protein_coding retained_intron MGP_AJ_T0083690.1 MGP_AJ_G0032148.1 mouse_genomes_project 7 43909732 43910998 - Nr1h2 protein_coding retained_intron MGP_AJ_T0008824.1 MGP_AJ_G0007124.1 mouse_genomes_project 7 22461086 22462902 + Gm4598 lincRNA lincRNA MGP_AJ_T0085052.1 MGP_AJ_G0032490.1 mouse_genomes_project 7 93054399 93108491 + MGP_AJ_P0085052 Prcp protein_coding protein_coding MGP_AJ_T0085546.1 MGP_AJ_G0032625.1 mouse_genomes_project 7 103600713 103601649 + MGP_AJ_P0085546 Olfr594 protein_coding protein_coding MGP_AJ_T0015820.1 MGP_AJ_G0013915.1 mouse_genomes_project 7 42997514 42997819 + processed_pseudogene processed_pseudogene MGP_AJ_T0086850.1 MGP_AJ_G0033020.1 mouse_genomes_project 7 128269593 128272654 - Zfp688 protein_coding retained_intron MGP_AJ_T0086851.1 MGP_AJ_G0033020.1 mouse_genomes_project 7 128269593 128272666 - MGP_AJ_P0086851 Zfp688 protein_coding nonsense_mediated_decay MGP_AJ_T0086852.1 MGP_AJ_G0033020.1 mouse_genomes_project 7 128269593 128272661 - MGP_AJ_P0086852 Zfp688 protein_coding protein_coding MGP_AJ_T0086853.1 MGP_AJ_G0033020.1 mouse_genomes_project 7 128269595 128272695 - Zfp688 protein_coding retained_intron MGP_AJ_T0086854.1 MGP_AJ_G0033020.1 mouse_genomes_project 7 128269972 128272477 - MGP_AJ_P0086854 Zfp688 protein_coding protein_coding MGP_AJ_T0086855.1 MGP_AJ_G0033020.1 mouse_genomes_project 7 128270217 128272594 - MGP_AJ_P0086855 Zfp688 protein_coding nonsense_mediated_decay MGP_AJ_T0082722.1 MGP_AJ_G0031932.1 mouse_genomes_project 7 26834593 26842292 + MGP_AJ_P0082722 Fbxo27 protein_coding protein_coding MGP_AJ_T0082723.1 MGP_AJ_G0031932.1 mouse_genomes_project 7 26834783 26835259 + MGP_AJ_P0082723 Fbxo27 protein_coding protein_coding MGP_AJ_T0082724.1 MGP_AJ_G0031932.1 mouse_genomes_project 7 26834851 26842296 + MGP_AJ_P0082724 Fbxo27 protein_coding protein_coding MGP_AJ_T0082725.1 MGP_AJ_G0031932.1 mouse_genomes_project 7 26839603 26840913 + Fbxo27 protein_coding processed_transcript MGP_AJ_T0008857.1 MGP_AJ_G0007155.1 mouse_genomes_project 7 38248079 38257000 + Gm37494 lincRNA lincRNA MGP_AJ_T0008858.1 MGP_AJ_G0007155.1 mouse_genomes_project 7 38256178 38257400 + Gm37494 lincRNA lincRNA MGP_AJ_T0008859.1 MGP_AJ_G0007155.1 mouse_genomes_project 7 38256179 38285704 + Gm37494 lincRNA lincRNA MGP_AJ_T0008860.1 MGP_AJ_G0007155.1 mouse_genomes_project 7 38256203 38269340 + Gm37494 lincRNA lincRNA MGP_AJ_T0081654.1 MGP_AJ_G0031617.1 mouse_genomes_project 7 9599309 9600266 - MGP_AJ_P0081654 Vmn1r84 protein_coding protein_coding MGP_AJ_T0100165.1 MGP_AJ_G0038131.1 mouse_genomes_project 7 91858218 91858363 - Gm23928 snRNA snRNA MGP_AJ_T0098726.1 MGP_AJ_G0036710.1 mouse_genomes_project 7 82844463 82844571 - n-R5s154 rRNA rRNA MGP_AJ_T0008941.1 MGP_AJ_G0007217.1 mouse_genomes_project 7 78845421 78845698 + 1700011D18Rik lincRNA lincRNA MGP_AJ_T0086957.1 MGP_AJ_G0033038.1 mouse_genomes_project 7 128639860 128643184 + MGP_AJ_P0086957 Hsd3b7 protein_coding protein_coding MGP_AJ_T0086958.1 MGP_AJ_G0033038.1 mouse_genomes_project 7 128639883 128643176 + Hsd3b7 protein_coding retained_intron MGP_AJ_T0086959.1 MGP_AJ_G0033038.1 mouse_genomes_project 7 128639883 128643176 + Hsd3b7 protein_coding retained_intron MGP_AJ_T0086960.1 MGP_AJ_G0033038.1 mouse_genomes_project 7 128639893 128643176 + MGP_AJ_P0086960 Hsd3b7 protein_coding protein_coding MGP_AJ_T0086961.1 MGP_AJ_G0033038.1 mouse_genomes_project 7 128639893 128641772 + MGP_AJ_P0086961 Hsd3b7 protein_coding protein_coding MGP_AJ_T0086962.1 MGP_AJ_G0033038.1 mouse_genomes_project 7 128639915 128641396 + MGP_AJ_P0086962 Hsd3b7 protein_coding protein_coding MGP_AJ_T0086963.1 MGP_AJ_G0033038.1 mouse_genomes_project 7 128639925 128641644 + MGP_AJ_P0086963 Hsd3b7 protein_coding nonsense_mediated_decay MGP_AJ_T0086964.1 MGP_AJ_G0033038.1 mouse_genomes_project 7 128639926 128641597 + Hsd3b7 protein_coding retained_intron MGP_AJ_T0086965.1 MGP_AJ_G0033038.1 mouse_genomes_project 7 128639937 128641487 + Hsd3b7 protein_coding retained_intron MGP_AJ_T0086966.1 MGP_AJ_G0033038.1 mouse_genomes_project 7 128639950 128641701 + Hsd3b7 protein_coding retained_intron MGP_AJ_T0086967.1 MGP_AJ_G0033038.1 mouse_genomes_project 7 128639959 128641412 + MGP_AJ_P0086967 Hsd3b7 protein_coding protein_coding MGP_AJ_T0086968.1 MGP_AJ_G0033038.1 mouse_genomes_project 7 128640308 128640886 + MGP_AJ_P0086968 Hsd3b7 protein_coding protein_coding MGP_AJ_T0009045.1 MGP_AJ_G0007278.1 mouse_genomes_project 7 129662065 129792743 + Gm44671 lincRNA lincRNA MGP_AJ_T0087731.1 MGP_AJ_G0033218.1 mouse_genomes_project 7 142492221 142540028 - MGP_AJ_P0087731 Chid1 protein_coding protein_coding MGP_AJ_T0087732.1 MGP_AJ_G0033218.1 mouse_genomes_project 7 142494481 142539990 - Chid1 protein_coding retained_intron MGP_AJ_T0087733.1 MGP_AJ_G0033218.1 mouse_genomes_project 7 142495132 142533109 - MGP_AJ_P0087733 Chid1 protein_coding nonsense_mediated_decay MGP_AJ_T0087734.1 MGP_AJ_G0033218.1 mouse_genomes_project 7 142495132 142540036 - MGP_AJ_P0087734 Chid1 protein_coding protein_coding MGP_AJ_T0087735.1 MGP_AJ_G0033218.1 mouse_genomes_project 7 142511969 142526662 - Chid1 protein_coding processed_transcript MGP_AJ_T0087736.1 MGP_AJ_G0033218.1 mouse_genomes_project 7 142515609 142539701 - MGP_AJ_P0087736 Chid1 protein_coding protein_coding MGP_AJ_T0087737.1 MGP_AJ_G0033218.1 mouse_genomes_project 7 142532081 142540003 - Chid1 protein_coding retained_intron MGP_AJ_T0002225.1 MGP_AJ_G0002137.1 mouse_genomes_project 7 45756779 45757295 + TEC TEC MGP_AJ_T0102840.1 MGP_AJ_G0040580.1 mouse_genomes_project 7 47124572 47125409 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0005179.1 MGP_AJ_G0004409.1 mouse_genomes_project 7 28666025 28669442 - Nphs1os antisense antisense MGP_AJ_T0005311.1 MGP_AJ_G0004503.1 mouse_genomes_project 7 143970233 143989335 - Tspan32os antisense antisense MGP_AJ_T0005312.1 MGP_AJ_G0004503.1 mouse_genomes_project 7 143970233 143972043 - Tspan32os antisense antisense MGP_AJ_T0084264.1 MGP_AJ_G0032302.1 mouse_genomes_project 7 59686074 59717649 - MGP_AJ_P0084264 Gm38393 protein_coding nonsense_mediated_decay MGP_AJ_T0084265.1 MGP_AJ_G0032302.1 mouse_genomes_project 7 59686074 59717649 - MGP_AJ_P0084265 Gm38393 protein_coding nonsense_mediated_decay MGP_AJ_T0084266.1 MGP_AJ_G0032302.1 mouse_genomes_project 7 59688667 59692604 - Gm38393 protein_coding processed_transcript MGP_AJ_T0084267.1 MGP_AJ_G0032302.1 mouse_genomes_project 7 59692437 59692860 - Gm38393 protein_coding processed_transcript MGP_AJ_T0010887.1 MGP_AJ_G0009009.1 mouse_genomes_project 7 61817607 61817687 - Mir344-2 miRNA miRNA MGP_AJ_T0087206.1 MGP_AJ_G0033083.1 mouse_genomes_project 7 132245532 132250473 + MGP_AJ_P0087206 Fam24a protein_coding protein_coding MGP_AJ_T0102897.1 MGP_AJ_G0040637.1 mouse_genomes_project 7 104056684 104154372 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0085804.1 MGP_AJ_G0032763.1 mouse_genomes_project 7 107550172 107551100 - MGP_AJ_P0085804 protein_coding protein_coding MGP_AJ_T0081267.1 MGP_AJ_G0031494.1 mouse_genomes_project 7 333833 345237 + MGP_AJ_P0081267 Cacng6 protein_coding protein_coding MGP_AJ_T0081268.1 MGP_AJ_G0031494.1 mouse_genomes_project 7 334300 344731 + MGP_AJ_P0081268 Cacng6 protein_coding protein_coding MGP_AJ_T0005242.1 MGP_AJ_G0004455.1 mouse_genomes_project 7 82832969 82845235 - 4933406J10Rik antisense antisense MGP_AJ_T0011684.1 MGP_AJ_G0009806.1 mouse_genomes_project 7 39070701 39070973 + Gm24910 misc_RNA misc_RNA MGP_AJ_T0018393.1 MGP_AJ_G0015656.1 mouse_genomes_project 7 75204104 75213925 + 1500012K07Rik processed_transcript lincRNA MGP_AJ_T0018394.1 MGP_AJ_G0015656.1 mouse_genomes_project 7 75204110 75224200 + 1500012K07Rik processed_transcript lincRNA MGP_AJ_T0018395.1 MGP_AJ_G0015656.1 mouse_genomes_project 7 75204110 75225781 + 1500012K07Rik processed_transcript antisense MGP_AJ_T0082104.1 MGP_AJ_G0031761.1 mouse_genomes_project 7 17224716 17228086 + MGP_AJ_P0082104 Zfp296 protein_coding protein_coding MGP_AJ_T0081474.1 MGP_AJ_G0031530.1 mouse_genomes_project 7 1638878 1658955 - MGP_AJ_P0081474 Tmem150b protein_coding protein_coding MGP_AJ_T0081476.1 MGP_AJ_G0031530.1 mouse_genomes_project 7 1648325 1658788 - MGP_AJ_P0081476 Tmem150b protein_coding protein_coding MGP_AJ_T0102863.1 MGP_AJ_G0040603.1 mouse_genomes_project 7 85118613 85119133 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0082700.1 MGP_AJ_G0031925.1 mouse_genomes_project 7 26562217 26572729 + MGP_AJ_P0082700 Gmfg protein_coding protein_coding MGP_AJ_T0082701.1 MGP_AJ_G0031925.1 mouse_genomes_project 7 26562257 26572686 + MGP_AJ_P0082701 Gmfg protein_coding protein_coding MGP_AJ_T0082702.1 MGP_AJ_G0031925.1 mouse_genomes_project 7 26565486 26572722 + MGP_AJ_P0082702 Gmfg protein_coding protein_coding MGP_AJ_T0082703.1 MGP_AJ_G0031925.1 mouse_genomes_project 7 26565623 26572175 + MGP_AJ_P0082703 Gmfg protein_coding protein_coding MGP_AJ_T0082704.1 MGP_AJ_G0031925.1 mouse_genomes_project 7 26568962 26574416 + Gmfg protein_coding processed_transcript MGP_AJ_T0084999.1 MGP_AJ_G0032476.1 mouse_genomes_project 7 90161918 90163018 + MGP_AJ_P0084999 protein_coding protein_coding MGP_AJ_T0002245.1 MGP_AJ_G0002157.1 mouse_genomes_project 7 64364834 64365439 + TEC TEC MGP_AJ_T0010903.1 MGP_AJ_G0009025.1 mouse_genomes_project 7 86476944 86477040 - Gm23192 miRNA miRNA MGP_AJ_T0087429.1 MGP_AJ_G0033137.1 mouse_genomes_project 7 140899796 140901120 + MGP_AJ_P0087429 Utf1 protein_coding protein_coding MGP_AJ_T0008814.1 MGP_AJ_G0007115.1 mouse_genomes_project 7 10204078 10206653 + Gm29638 lincRNA lincRNA MGP_AJ_T0083247.1 MGP_AJ_G0032043.1 mouse_genomes_project 7 29596535 29601320 - MGP_AJ_P0083247 Scgb2b3 protein_coding protein_coding MGP_AJ_T0101868.1 MGP_AJ_G0039749.1 mouse_genomes_project 7 126977254 126981633 + transcribed_processed_pseudogene processed_transcript MGP_AJ_T0101869.1 MGP_AJ_G0039749.1 mouse_genomes_project 7 126978874 126979831 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0084981.1 MGP_AJ_G0032470.1 mouse_genomes_project 7 89725713 89735513 - MGP_AJ_P0084981 Prss23 protein_coding protein_coding MGP_AJ_T0083204.1 MGP_AJ_G0032036.1 mouse_genomes_project 7 29308146 29319631 + MGP_AJ_P0083204 Lgi4 protein_coding protein_coding MGP_AJ_T0083205.1 MGP_AJ_G0032036.1 mouse_genomes_project 7 29309386 29312490 + MGP_AJ_P0083205 Lgi4 protein_coding nonsense_mediated_decay MGP_AJ_T0083206.1 MGP_AJ_G0032036.1 mouse_genomes_project 7 29309424 29312896 + MGP_AJ_P0083206 Lgi4 protein_coding nonsense_mediated_decay MGP_AJ_T0083207.1 MGP_AJ_G0032036.1 mouse_genomes_project 7 29312370 29313418 + MGP_AJ_P0083207 Lgi4 protein_coding protein_coding MGP_AJ_T0084118.1 MGP_AJ_G0032273.1 mouse_genomes_project 7 48700282 48714207 + Zdhhc13 protein_coding processed_transcript MGP_AJ_T0084119.1 MGP_AJ_G0032273.1 mouse_genomes_project 7 48700361 48738719 + MGP_AJ_P0084119 Zdhhc13 protein_coding protein_coding MGP_AJ_T0081375.1 MGP_AJ_G0031512.1 mouse_genomes_project 7 1039361 1044512 + MGP_AJ_P0081375 Leng8 protein_coding protein_coding MGP_AJ_T0081376.1 MGP_AJ_G0031512.1 mouse_genomes_project 7 1039371 1042328 + MGP_AJ_P0081376 Leng8 protein_coding protein_coding MGP_AJ_T0081377.1 MGP_AJ_G0031512.1 mouse_genomes_project 7 1039371 1050506 + MGP_AJ_P0081377 Leng8 protein_coding protein_coding MGP_AJ_T0081378.1 MGP_AJ_G0031512.1 mouse_genomes_project 7 1039382 1042781 + MGP_AJ_P0081378 Leng8 protein_coding protein_coding MGP_AJ_T0081379.1 MGP_AJ_G0031512.1 mouse_genomes_project 7 1039388 1050501 + MGP_AJ_P0081379 Leng8 protein_coding protein_coding MGP_AJ_T0081380.1 MGP_AJ_G0031512.1 mouse_genomes_project 7 1039393 1044437 + MGP_AJ_P0081380 Leng8 protein_coding protein_coding MGP_AJ_T0081381.1 MGP_AJ_G0031512.1 mouse_genomes_project 7 1039406 1050502 + Leng8 protein_coding retained_intron MGP_AJ_T0081382.1 MGP_AJ_G0031512.1 mouse_genomes_project 7 1039890 1043422 + MGP_AJ_P0081382 Leng8 protein_coding protein_coding MGP_AJ_T0081383.1 MGP_AJ_G0031512.1 mouse_genomes_project 7 1044487 1045258 + Leng8 protein_coding retained_intron MGP_AJ_T0081384.1 MGP_AJ_G0031512.1 mouse_genomes_project 7 1047048 1047971 + Leng8 protein_coding retained_intron MGP_AJ_T0087490.1 MGP_AJ_G0033161.1 mouse_genomes_project 7 141407527 141408579 + MGP_AJ_P0087490 Olfr533 protein_coding protein_coding MGP_AJ_T0102830.1 MGP_AJ_G0040570.1 mouse_genomes_project 7 43424768 43427138 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0086513.1 MGP_AJ_G0032959.1 mouse_genomes_project 7 127186760 127193792 - MGP_AJ_P0086513 Spns1 protein_coding protein_coding MGP_AJ_T0086514.1 MGP_AJ_G0032959.1 mouse_genomes_project 7 127186769 127194126 - Spns1 protein_coding retained_intron MGP_AJ_T0086515.1 MGP_AJ_G0032959.1 mouse_genomes_project 7 127186769 127194126 - MGP_AJ_P0086515 Spns1 protein_coding nonsense_mediated_decay MGP_AJ_T0086516.1 MGP_AJ_G0032959.1 mouse_genomes_project 7 127187449 127193744 - MGP_AJ_P0086516 Spns1 protein_coding protein_coding MGP_AJ_T0086517.1 MGP_AJ_G0032959.1 mouse_genomes_project 7 127187934 127189634 - Spns1 protein_coding retained_intron MGP_AJ_T0086518.1 MGP_AJ_G0032959.1 mouse_genomes_project 7 127188294 127193810 - MGP_AJ_P0086518 Spns1 protein_coding nonsense_mediated_decay MGP_AJ_T0086519.1 MGP_AJ_G0032959.1 mouse_genomes_project 7 127188578 127189277 - Spns1 protein_coding retained_intron MGP_AJ_T0086520.1 MGP_AJ_G0032959.1 mouse_genomes_project 7 127189459 127193922 - MGP_AJ_P0086520 Spns1 protein_coding protein_coding MGP_AJ_T0086521.1 MGP_AJ_G0032959.1 mouse_genomes_project 7 127190375 127191079 - Spns1 protein_coding retained_intron MGP_AJ_T0086522.1 MGP_AJ_G0032959.1 mouse_genomes_project 7 127190991 127193443 - Spns1 protein_coding processed_transcript MGP_AJ_T0086523.1 MGP_AJ_G0032959.1 mouse_genomes_project 7 127193412 127194136 - Spns1 protein_coding processed_transcript MGP_AJ_T0083928.1 MGP_AJ_G0032211.1 mouse_genomes_project 7 45008052 45009636 - MGP_AJ_P0083928 Fgf21 protein_coding protein_coding MGP_AJ_T0086986.1 MGP_AJ_G0033042.1 mouse_genomes_project 7 128720388 128722684 + Zfp646 protein_coding retained_intron MGP_AJ_T0086987.1 MGP_AJ_G0033042.1 mouse_genomes_project 7 128720963 128724356 + MGP_AJ_P0086987 Zfp646 protein_coding protein_coding MGP_AJ_T0086988.1 MGP_AJ_G0033042.1 mouse_genomes_project 7 128721868 128730164 + MGP_AJ_P0086988 Zfp646 protein_coding protein_coding MGP_AJ_T0086989.1 MGP_AJ_G0033042.1 mouse_genomes_project 7 128723478 128730160 + MGP_AJ_P0086989 Zfp646 protein_coding protein_coding MGP_AJ_T0102867.1 MGP_AJ_G0040607.1 mouse_genomes_project 7 85175922 85178020 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0086409.1 MGP_AJ_G0032942.1 mouse_genomes_project 7 123950421 123989784 + Tnrc6a protein_coding processed_transcript MGP_AJ_T0086410.1 MGP_AJ_G0032942.1 mouse_genomes_project 7 123950713 124021278 + MGP_AJ_P0086410 Tnrc6a protein_coding protein_coding MGP_AJ_T0086411.1 MGP_AJ_G0032942.1 mouse_genomes_project 7 123950792 124004868 + MGP_AJ_P0086411 Tnrc6a protein_coding nonsense_mediated_decay MGP_AJ_T0086412.1 MGP_AJ_G0032942.1 mouse_genomes_project 7 123950864 124003557 + MGP_AJ_P0086412 Tnrc6a protein_coding unknown_likely_coding MGP_AJ_T0086413.1 MGP_AJ_G0032942.1 mouse_genomes_project 7 123950864 124022590 + MGP_AJ_P0086413 Tnrc6a protein_coding protein_coding MGP_AJ_T0086414.1 MGP_AJ_G0032942.1 mouse_genomes_project 7 123996245 123998028 + Tnrc6a protein_coding retained_intron MGP_AJ_T0086415.1 MGP_AJ_G0032942.1 mouse_genomes_project 7 123997754 124021269 + MGP_AJ_P0086415 Tnrc6a protein_coding protein_coding MGP_AJ_T0086416.1 MGP_AJ_G0032942.1 mouse_genomes_project 7 123998510 124002822 + Tnrc6a protein_coding retained_intron MGP_AJ_T0086417.1 MGP_AJ_G0032942.1 mouse_genomes_project 7 123998769 124001556 + Tnrc6a protein_coding retained_intron MGP_AJ_T0086418.1 MGP_AJ_G0032942.1 mouse_genomes_project 7 123999981 124001321 + Tnrc6a protein_coding retained_intron MGP_AJ_T0086419.1 MGP_AJ_G0032942.1 mouse_genomes_project 7 124001338 124007792 + MGP_AJ_P0086419 Tnrc6a protein_coding protein_coding MGP_AJ_T0086420.1 MGP_AJ_G0032942.1 mouse_genomes_project 7 124007091 124021023 + Tnrc6a protein_coding retained_intron MGP_AJ_T0100145.1 MGP_AJ_G0038111.1 mouse_genomes_project 7 38340146 38340257 + Gm26327 snRNA snRNA MGP_AJ_T0087479.1 MGP_AJ_G0033152.1 mouse_genomes_project 7 141151096 141152154 - MGP_AJ_P0087479 Olfr524 protein_coding protein_coding MGP_AJ_T0084752.1 MGP_AJ_G0032395.1 mouse_genomes_project 7 80498712 80508987 - MGP_AJ_P0084752 Blm protein_coding protein_coding MGP_AJ_T0084753.1 MGP_AJ_G0032395.1 mouse_genomes_project 7 80499207 80580534 - MGP_AJ_P0084753 Blm protein_coding protein_coding MGP_AJ_T0084754.1 MGP_AJ_G0032395.1 mouse_genomes_project 7 80499306 80580413 - MGP_AJ_P0084754 Blm protein_coding protein_coding MGP_AJ_T0084755.1 MGP_AJ_G0032395.1 mouse_genomes_project 7 80499452 80501584 - Blm protein_coding processed_transcript MGP_AJ_T0084756.1 MGP_AJ_G0032395.1 mouse_genomes_project 7 80499607 80503465 - Blm protein_coding retained_intron MGP_AJ_T0084757.1 MGP_AJ_G0032395.1 mouse_genomes_project 7 80499635 80505036 - MGP_AJ_P0084757 Blm protein_coding nonsense_mediated_decay MGP_AJ_T0084758.1 MGP_AJ_G0032395.1 mouse_genomes_project 7 80508962 80511675 - MGP_AJ_P0084758 Blm protein_coding nonsense_mediated_decay MGP_AJ_T0084759.1 MGP_AJ_G0032395.1 mouse_genomes_project 7 80513436 80560124 - Blm protein_coding retained_intron MGP_AJ_T0084760.1 MGP_AJ_G0032395.1 mouse_genomes_project 7 80513462 80515969 - Blm protein_coding retained_intron MGP_AJ_T0084761.1 MGP_AJ_G0032395.1 mouse_genomes_project 7 80518837 80527262 - Blm protein_coding retained_intron MGP_AJ_T0083480.1 MGP_AJ_G0032098.1 mouse_genomes_project 7 41451391 41483856 - MGP_AJ_P0083480 Zfp141 protein_coding protein_coding MGP_AJ_T0083481.1 MGP_AJ_G0032098.1 mouse_genomes_project 7 41453968 41454922 - Zfp141 protein_coding retained_intron MGP_AJ_T0083482.1 MGP_AJ_G0032098.1 mouse_genomes_project 7 41454743 41483870 - MGP_AJ_P0083482 Zfp141 protein_coding protein_coding MGP_AJ_T0083483.1 MGP_AJ_G0032098.1 mouse_genomes_project 7 41466764 41483855 - Zfp141 protein_coding retained_intron MGP_AJ_T0009014.1 MGP_AJ_G0007258.1 mouse_genomes_project 7 122374192 122375881 + 1700025J12Rik lincRNA lincRNA MGP_AJ_T0009030.1 MGP_AJ_G0007270.1 mouse_genomes_project 7 127799341 127803134 - lincRNA lincRNA MGP_AJ_T0009031.1 MGP_AJ_G0007270.1 mouse_genomes_project 7 127800244 127803461 - lincRNA lincRNA MGP_AJ_T0009032.1 MGP_AJ_G0007270.1 mouse_genomes_project 7 127800244 127803443 - lincRNA lincRNA MGP_AJ_T0009033.1 MGP_AJ_G0007270.1 mouse_genomes_project 7 127800244 127803722 - lincRNA lincRNA MGP_AJ_T0009034.1 MGP_AJ_G0007270.1 mouse_genomes_project 7 127800245 127803412 - lincRNA lincRNA MGP_AJ_T0009035.1 MGP_AJ_G0007270.1 mouse_genomes_project 7 127800246 127803470 - lincRNA lincRNA MGP_AJ_T0009036.1 MGP_AJ_G0007270.1 mouse_genomes_project 7 127802477 127803676 - lincRNA lincRNA MGP_AJ_T0085463.1 MGP_AJ_G0032576.1 mouse_genomes_project 7 102432617 102447299 + MGP_AJ_P0085463 Trpc2 protein_coding protein_coding MGP_AJ_T0010877.1 MGP_AJ_G0008999.1 mouse_genomes_project 7 61579404 61579484 - Gm23490 miRNA miRNA MGP_AJ_T0102881.1 MGP_AJ_G0040621.1 mouse_genomes_project 7 86168239 86169843 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0081763.1 MGP_AJ_G0031650.1 mouse_genomes_project 7 11165597 11244688 - MGP_AJ_P0081763 protein_coding protein_coding MGP_AJ_T0015943.1 MGP_AJ_G0014038.1 mouse_genomes_project 7 129463822 129464122 - processed_pseudogene processed_pseudogene MGP_AJ_T0081949.1 MGP_AJ_G0031714.1 mouse_genomes_project 7 16086364 16114023 - MGP_AJ_P0081949 Psg25 protein_coding protein_coding MGP_AJ_T0085589.1 MGP_AJ_G0032665.1 mouse_genomes_project 7 104374172 104375111 + MGP_AJ_P0085589 Olfr633 protein_coding protein_coding MGP_AJ_T0081767.1 MGP_AJ_G0031654.1 mouse_genomes_project 7 11323725 11376818 - MGP_AJ_P0081767 Sult2a3 protein_coding protein_coding MGP_AJ_T0005281.1 MGP_AJ_G0004480.1 mouse_genomes_project 7 122494886 122495825 + 1700069B07Rik antisense antisense MGP_AJ_T0005282.1 MGP_AJ_G0004480.1 mouse_genomes_project 7 122495000 122495823 + 1700069B07Rik antisense antisense MGP_AJ_T0085559.1 MGP_AJ_G0032637.1 mouse_genomes_project 7 103898510 103899470 - MGP_AJ_P0085559 Olfr609 protein_coding protein_coding MGP_AJ_T0086344.1 MGP_AJ_G0032930.1 mouse_genomes_project 7 122780021 122815360 - MGP_AJ_P0086344 Gga2 protein_coding protein_coding MGP_AJ_T0086345.1 MGP_AJ_G0032930.1 mouse_genomes_project 7 122780021 122815305 - MGP_AJ_P0086345 Gga2 protein_coding nonsense_mediated_decay MGP_AJ_T0086346.1 MGP_AJ_G0032930.1 mouse_genomes_project 7 122782671 122796519 - Gga2 protein_coding retained_intron MGP_AJ_T0086347.1 MGP_AJ_G0032930.1 mouse_genomes_project 7 122790611 122793103 - Gga2 protein_coding retained_intron MGP_AJ_T0086348.1 MGP_AJ_G0032930.1 mouse_genomes_project 7 122798774 122815318 - Gga2 protein_coding retained_intron MGP_AJ_T0086349.1 MGP_AJ_G0032930.1 mouse_genomes_project 7 122804572 122815325 - Gga2 protein_coding retained_intron MGP_AJ_T0086507.1 MGP_AJ_G0032958.1 mouse_genomes_project 7 127180149 127186244 - MGP_AJ_P0086507 Lat protein_coding protein_coding MGP_AJ_T0086508.1 MGP_AJ_G0032958.1 mouse_genomes_project 7 127180152 127186237 - MGP_AJ_P0086508 Lat protein_coding protein_coding MGP_AJ_T0086509.1 MGP_AJ_G0032958.1 mouse_genomes_project 7 127180229 127181212 - Lat protein_coding retained_intron MGP_AJ_T0086510.1 MGP_AJ_G0032958.1 mouse_genomes_project 7 127184220 127186273 - Lat protein_coding retained_intron MGP_AJ_T0086511.1 MGP_AJ_G0032958.1 mouse_genomes_project 7 127184801 127186197 - MGP_AJ_P0086511 Lat protein_coding protein_coding MGP_AJ_T0086512.1 MGP_AJ_G0032958.1 mouse_genomes_project 7 127185359 127186043 - Lat protein_coding retained_intron MGP_AJ_T0083456.1 MGP_AJ_G0032089.1 mouse_genomes_project 7 40287326 40311273 - MGP_AJ_P0083456 AW146154 protein_coding protein_coding MGP_AJ_T0083457.1 MGP_AJ_G0032089.1 mouse_genomes_project 7 40289884 40291019 - AW146154 protein_coding retained_intron MGP_AJ_T0083458.1 MGP_AJ_G0032089.1 mouse_genomes_project 7 40296275 40310810 - AW146154 protein_coding processed_transcript MGP_AJ_T0085908.1 MGP_AJ_G0032831.1 mouse_genomes_project 7 110380214 110396545 - MGP_AJ_P0085908 Tmem9b protein_coding protein_coding MGP_AJ_T0085909.1 MGP_AJ_G0032831.1 mouse_genomes_project 7 110389729 110396613 - MGP_AJ_P0085909 Tmem9b protein_coding protein_coding MGP_AJ_T0015796.1 MGP_AJ_G0013891.1 mouse_genomes_project 7 38371280 38371744 - processed_pseudogene processed_pseudogene MGP_AJ_T0081324.1 MGP_AJ_G0031504.1 mouse_genomes_project 7 559264 561208 + MGP_AJ_P0081324 Tsen34 protein_coding protein_coding MGP_AJ_T0081325.1 MGP_AJ_G0031504.1 mouse_genomes_project 7 559779 567327 + MGP_AJ_P0081325 Tsen34 protein_coding protein_coding MGP_AJ_T0081326.1 MGP_AJ_G0031504.1 mouse_genomes_project 7 560003 561588 + MGP_AJ_P0081326 Tsen34 protein_coding protein_coding MGP_AJ_T0081327.1 MGP_AJ_G0031504.1 mouse_genomes_project 7 560166 567238 + MGP_AJ_P0081327 Tsen34 protein_coding protein_coding MGP_AJ_T0081328.1 MGP_AJ_G0031504.1 mouse_genomes_project 7 560202 562027 + Tsen34 protein_coding retained_intron MGP_AJ_T0081329.1 MGP_AJ_G0031504.1 mouse_genomes_project 7 560230 561611 + MGP_AJ_P0081329 Tsen34 protein_coding protein_coding MGP_AJ_T0081330.1 MGP_AJ_G0031504.1 mouse_genomes_project 7 560699 561495 + MGP_AJ_P0081330 Tsen34 protein_coding protein_coding MGP_AJ_T0081331.1 MGP_AJ_G0031504.1 mouse_genomes_project 7 560909 566850 + MGP_AJ_P0081331 Tsen34 protein_coding nonsense_mediated_decay MGP_AJ_T0081332.1 MGP_AJ_G0031504.1 mouse_genomes_project 7 561590 566850 + MGP_AJ_P0081332 Tsen34 protein_coding protein_coding MGP_AJ_T0009016.1 MGP_AJ_G0007260.1 mouse_genomes_project 7 125448102 125533448 - 3100003L05Rik lincRNA lincRNA MGP_AJ_T0083790.1 MGP_AJ_G0032180.1 mouse_genomes_project 7 44498286 44501385 - MGP_AJ_P0083790 protein_coding protein_coding MGP_AJ_T0085504.1 MGP_AJ_G0032587.1 mouse_genomes_project 7 102851081 102853798 - MGP_AJ_P0085504 Olfr545 protein_coding protein_coding MGP_AJ_T0011690.1 MGP_AJ_G0009812.1 mouse_genomes_project 7 91297786 91297996 - Gm27470 misc_RNA misc_RNA MGP_AJ_T0085665.1 MGP_AJ_G0032713.1 mouse_genomes_project 7 105390869 105391946 - MGP_AJ_P0085665 protein_coding protein_coding MGP_AJ_T0081633.1 MGP_AJ_G0031601.1 mouse_genomes_project 7 7682874 7684606 - MGP_AJ_P0081633 Vmn1r69 protein_coding protein_coding MGP_AJ_T0081634.1 MGP_AJ_G0031601.1 mouse_genomes_project 7 7683807 7717568 - MGP_AJ_P0081634 Vmn1r69 protein_coding protein_coding MGP_AJ_T0081635.1 MGP_AJ_G0031601.1 mouse_genomes_project 7 7683807 7717568 - MGP_AJ_P0081635 Vmn1r69 protein_coding protein_coding MGP_AJ_T0008841.1 MGP_AJ_G0007139.1 mouse_genomes_project 7 33072614 33073331 - Gm44837 lincRNA lincRNA MGP_AJ_T0087232.1 MGP_AJ_G0033092.1 mouse_genomes_project 7 132957618 133071640 - MGP_AJ_P0087232 Cpxm2 protein_coding protein_coding MGP_AJ_T0087233.1 MGP_AJ_G0033092.1 mouse_genomes_project 7 132969434 132974665 - Cpxm2 protein_coding retained_intron MGP_AJ_T0087234.1 MGP_AJ_G0033092.1 mouse_genomes_project 7 132971867 133071523 - Cpxm2 protein_coding retained_intron MGP_AJ_T0087235.1 MGP_AJ_G0033092.1 mouse_genomes_project 7 133021499 133062515 - Cpxm2 protein_coding processed_transcript MGP_AJ_T0100131.1 MGP_AJ_G0038097.1 mouse_genomes_project 7 992890 993061 + Gm23741 snRNA snRNA MGP_AJ_T0005285.1 MGP_AJ_G0004483.1 mouse_genomes_project 7 124790093 124802452 - Gm27040 antisense antisense MGP_AJ_T0085350.1 MGP_AJ_G0032557.1 mouse_genomes_project 7 101616379 101646445 + MGP_AJ_P0085350 Stard10 protein_coding protein_coding MGP_AJ_T0085351.1 MGP_AJ_G0032557.1 mouse_genomes_project 7 101620476 101645956 + MGP_AJ_P0085351 Stard10 protein_coding protein_coding MGP_AJ_T0085352.1 MGP_AJ_G0032557.1 mouse_genomes_project 7 101620747 101643106 + MGP_AJ_P0085352 Stard10 protein_coding protein_coding MGP_AJ_T0085353.1 MGP_AJ_G0032557.1 mouse_genomes_project 7 101620972 101646008 + MGP_AJ_P0085353 Stard10 protein_coding protein_coding MGP_AJ_T0085354.1 MGP_AJ_G0032557.1 mouse_genomes_project 7 101621044 101646127 + MGP_AJ_P0085354 Stard10 protein_coding protein_coding MGP_AJ_T0085355.1 MGP_AJ_G0032557.1 mouse_genomes_project 7 101621229 101644151 + MGP_AJ_P0085355 Stard10 protein_coding protein_coding MGP_AJ_T0085356.1 MGP_AJ_G0032557.1 mouse_genomes_project 7 101642328 101645956 + MGP_AJ_P0085356 Stard10 protein_coding nonsense_mediated_decay MGP_AJ_T0085521.1 MGP_AJ_G0032603.1 mouse_genomes_project 7 103100867 103120564 - MGP_AJ_P0085521 Olfr78 protein_coding protein_coding MGP_AJ_T0085522.1 MGP_AJ_G0032603.1 mouse_genomes_project 7 103100867 103120564 - MGP_AJ_P0085522 Olfr78 protein_coding protein_coding MGP_AJ_T0083551.1 MGP_AJ_G0032120.1 mouse_genomes_project 7 42778030 42786835 - MGP_AJ_P0083551 Siglece protein_coding protein_coding MGP_AJ_T0083552.1 MGP_AJ_G0032120.1 mouse_genomes_project 7 42778501 42786027 - MGP_AJ_P0083552 Siglece protein_coding protein_coding MGP_AJ_T0087313.1 MGP_AJ_G0033107.1 mouse_genomes_project 7 134640659 134699426 - MGP_AJ_P0087313 Dhx32 protein_coding protein_coding MGP_AJ_T0087314.1 MGP_AJ_G0033107.1 mouse_genomes_project 7 134640663 134680657 - Dhx32 protein_coding processed_transcript MGP_AJ_T0087315.1 MGP_AJ_G0033107.1 mouse_genomes_project 7 134640827 134705428 - MGP_AJ_P0087315 Dhx32 protein_coding protein_coding MGP_AJ_T0087316.1 MGP_AJ_G0033107.1 mouse_genomes_project 7 134640866 134699373 - MGP_AJ_P0087316 Dhx32 protein_coding protein_coding MGP_AJ_T0087317.1 MGP_AJ_G0033107.1 mouse_genomes_project 7 134642761 134651064 - Dhx32 protein_coding processed_transcript MGP_AJ_T0087318.1 MGP_AJ_G0033107.1 mouse_genomes_project 7 134668950 134679860 - Dhx32 protein_coding processed_transcript MGP_AJ_T0087319.1 MGP_AJ_G0033107.1 mouse_genomes_project 7 134669250 134680217 - MGP_AJ_P0087319 Dhx32 protein_coding protein_coding MGP_AJ_T0087320.1 MGP_AJ_G0033107.1 mouse_genomes_project 7 134669395 134699310 - MGP_AJ_P0087320 Dhx32 protein_coding protein_coding MGP_AJ_T0087321.1 MGP_AJ_G0033107.1 mouse_genomes_project 7 134680065 134699132 - MGP_AJ_P0087321 Dhx32 protein_coding protein_coding MGP_AJ_T0015682.1 MGP_AJ_G0013777.1 mouse_genomes_project 7 74539 75334 + processed_pseudogene processed_pseudogene MGP_AJ_T0083466.1 MGP_AJ_G0032092.1 mouse_genomes_project 7 40443524 40459041 + MGP_AJ_P0083466 Zfp788 protein_coding protein_coding MGP_AJ_T0083467.1 MGP_AJ_G0032092.1 mouse_genomes_project 7 40443852 40462371 + MGP_AJ_P0083467 Zfp788 protein_coding protein_coding MGP_AJ_T0083468.1 MGP_AJ_G0032092.1 mouse_genomes_project 7 40443877 40459851 + MGP_AJ_P0083468 Zfp788 protein_coding protein_coding MGP_AJ_T0083469.1 MGP_AJ_G0032092.1 mouse_genomes_project 7 40443879 40460490 + MGP_AJ_P0083469 Zfp788 protein_coding protein_coding MGP_AJ_T0083470.1 MGP_AJ_G0032092.1 mouse_genomes_project 7 40443885 40462424 + MGP_AJ_P0083470 Zfp788 protein_coding protein_coding MGP_AJ_T0083471.1 MGP_AJ_G0032092.1 mouse_genomes_project 7 40443898 40463187 + MGP_AJ_P0083471 Zfp788 protein_coding protein_coding MGP_AJ_T0083472.1 MGP_AJ_G0032092.1 mouse_genomes_project 7 40459076 40462089 + MGP_AJ_P0083472 Zfp788 protein_coding protein_coding MGP_AJ_T0087776.1 MGP_AJ_G0033228.1 mouse_genomes_project 7 143161720 143162547 - MGP_AJ_P0087776 protein_coding protein_coding MGP_AJ_T0002266.1 MGP_AJ_G0002177.1 mouse_genomes_project 7 76662673 76664255 - TEC TEC MGP_AJ_T0015952.1 MGP_AJ_G0014047.1 mouse_genomes_project 7 140730999 140731410 + processed_pseudogene processed_pseudogene MGP_AJ_T0081564.1 MGP_AJ_G0031565.1 mouse_genomes_project 7 2818630 2819593 - MGP_AJ_P0081564 Vmn1r64 protein_coding protein_coding MGP_AJ_T0085867.1 MGP_AJ_G0032818.1 mouse_genomes_project 7 109502991 109503993 - MGP_AJ_P0085867 Olfr518 protein_coding protein_coding MGP_AJ_T0002222.1 MGP_AJ_G0002134.1 mouse_genomes_project 7 42846017 42846451 + TEC TEC MGP_AJ_T0015950.1 MGP_AJ_G0014045.1 mouse_genomes_project 7 140670456 140671745 + processed_pseudogene processed_pseudogene MGP_AJ_T0085534.1 MGP_AJ_G0032614.1 mouse_genomes_project 7 103322328 103323267 - MGP_AJ_P0085534 Olfr577 protein_coding protein_coding MGP_AJ_T0005277.1 MGP_AJ_G0004478.1 mouse_genomes_project 7 122084999 122171579 - Gm45077 antisense antisense MGP_AJ_T0083699.1 MGP_AJ_G0032153.1 mouse_genomes_project 7 44038000 44039271 + MGP_AJ_P0083699 protein_coding protein_coding MGP_AJ_T0087469.1 MGP_AJ_G0033148.1 mouse_genomes_project 7 141087206 141100861 + MGP_AJ_P0087469 Mtg1 protein_coding protein_coding MGP_AJ_T0087470.1 MGP_AJ_G0033148.1 mouse_genomes_project 7 141087291 141092383 + Mtg1 protein_coding retained_intron MGP_AJ_T0087471.1 MGP_AJ_G0033148.1 mouse_genomes_project 7 141087305 141097548 + Mtg1 protein_coding retained_intron MGP_AJ_T0087472.1 MGP_AJ_G0033148.1 mouse_genomes_project 7 141087605 141088039 + Mtg1 protein_coding processed_transcript MGP_AJ_T0087473.1 MGP_AJ_G0033148.1 mouse_genomes_project 7 141090465 141097236 + Mtg1 protein_coding retained_intron MGP_AJ_T0087474.1 MGP_AJ_G0033148.1 mouse_genomes_project 7 141099033 141100522 + Mtg1 protein_coding processed_transcript MGP_AJ_T0010841.1 MGP_AJ_G0008963.1 mouse_genomes_project 7 22131458 22131584 - Gm27592 miRNA miRNA MGP_AJ_T0081541.1 MGP_AJ_G0031550.1 mouse_genomes_project 7 1983647 1996500 + MGP_AJ_P0081541 Zfp865 protein_coding protein_coding MGP_AJ_T0081731.1 MGP_AJ_G0031642.1 mouse_genomes_project 7 10426155 10427106 + MGP_AJ_P0081731 Vmn1r88 protein_coding protein_coding MGP_AJ_T0002296.1 MGP_AJ_G0002207.1 mouse_genomes_project 7 123120329 123125776 + TEC TEC MGP_AJ_T0082352.1 MGP_AJ_G0031835.1 mouse_genomes_project 7 23067540 23073623 + MGP_AJ_P0082352 Zfp526 protein_coding protein_coding MGP_AJ_T0083101.1 MGP_AJ_G0032018.1 mouse_genomes_project 7 28926941 28928775 - MGP_AJ_P0083101 Tmem147 protein_coding protein_coding MGP_AJ_T0087379.1 MGP_AJ_G0033127.1 mouse_genomes_project 7 139895450 139988423 + MGP_AJ_P0087379 Jakmip3 protein_coding protein_coding MGP_AJ_T0087380.1 MGP_AJ_G0033127.1 mouse_genomes_project 7 139895470 139988417 + MGP_AJ_P0087380 Jakmip3 protein_coding protein_coding MGP_AJ_T0087381.1 MGP_AJ_G0033127.1 mouse_genomes_project 7 139895493 140005576 + MGP_AJ_P0087381 Jakmip3 protein_coding unknown_likely_coding MGP_AJ_T0087382.1 MGP_AJ_G0033127.1 mouse_genomes_project 7 140004184 140024655 + MGP_AJ_P0087382 Jakmip3 protein_coding protein_coding MGP_AJ_T0002200.1 MGP_AJ_G0002112.1 mouse_genomes_project 7 29458542 29459300 + TEC TEC MGP_AJ_T0002269.1 MGP_AJ_G0002180.1 mouse_genomes_project 7 78773077 78774154 - TEC TEC MGP_AJ_T0083693.1 MGP_AJ_G0032150.1 mouse_genomes_project 7 43950748 43964608 + MGP_AJ_P0083693 Kcnc3 protein_coding protein_coding MGP_AJ_T0083694.1 MGP_AJ_G0032150.1 mouse_genomes_project 7 43950748 43964608 + MGP_AJ_P0083694 Kcnc3 protein_coding protein_coding MGP_AJ_T0083695.1 MGP_AJ_G0032150.1 mouse_genomes_project 7 43950982 43960746 + MGP_AJ_P0083695 Kcnc3 protein_coding unknown_likely_coding MGP_AJ_T0008894.1 MGP_AJ_G0007180.1 mouse_genomes_project 7 65422704 65456549 + BC046251 lincRNA lincRNA MGP_AJ_T0082172.1 MGP_AJ_G0031782.1 mouse_genomes_project 7 21035279 21045057 + protein_coding processed_transcript MGP_AJ_T0005230.1 MGP_AJ_G0004447.1 mouse_genomes_project 7 79726586 79728657 + 9330171B17Rik antisense antisense MGP_AJ_T0005231.1 MGP_AJ_G0004447.1 mouse_genomes_project 7 79726674 79728659 + 9330171B17Rik antisense antisense MGP_AJ_T0082579.1 MGP_AJ_G0031891.1 mouse_genomes_project 7 25496816 25500415 + MGP_AJ_P0082579 Sertad3 protein_coding protein_coding MGP_AJ_T0083846.1 MGP_AJ_G0032195.1 mouse_genomes_project 7 44753739 44756432 - MGP_AJ_P0083846 Lin7b protein_coding protein_coding MGP_AJ_T0083847.1 MGP_AJ_G0032195.1 mouse_genomes_project 7 44753741 44754451 - Lin7b protein_coding retained_intron MGP_AJ_T0083848.1 MGP_AJ_G0032195.1 mouse_genomes_project 7 44755058 44756164 - Lin7b protein_coding retained_intron MGP_AJ_T0083849.1 MGP_AJ_G0032195.1 mouse_genomes_project 7 44755112 44756034 - Lin7b protein_coding retained_intron MGP_AJ_T0083850.1 MGP_AJ_G0032195.1 mouse_genomes_project 7 44755411 44756195 - Lin7b protein_coding retained_intron MGP_AJ_T0084461.1 MGP_AJ_G0032344.1 mouse_genomes_project 7 70237878 70246537 - MGP_AJ_P0084461 Nr2f2 protein_coding protein_coding MGP_AJ_T0084462.1 MGP_AJ_G0032344.1 mouse_genomes_project 7 70240356 70252667 - MGP_AJ_P0084462 Nr2f2 protein_coding protein_coding MGP_AJ_T0087055.1 MGP_AJ_G0033057.1 mouse_genomes_project 7 129047145 129048098 - MGP_AJ_P0087055 Cox6a2 protein_coding protein_coding MGP_AJ_T0102850.1 MGP_AJ_G0040590.1 mouse_genomes_project 7 47958174 47959123 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0102915.1 MGP_AJ_G0040655.1 mouse_genomes_project 7 106382058 106385651 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0087374.1 MGP_AJ_G0033126.1 mouse_genomes_project 7 139843682 139862600 - MGP_AJ_P0087374 Bnip3 protein_coding protein_coding MGP_AJ_T0087375.1 MGP_AJ_G0033126.1 mouse_genomes_project 7 139847454 139862589 - Bnip3 protein_coding processed_transcript MGP_AJ_T0087376.1 MGP_AJ_G0033126.1 mouse_genomes_project 7 139847703 139851370 - Bnip3 protein_coding processed_transcript MGP_AJ_T0087377.1 MGP_AJ_G0033126.1 mouse_genomes_project 7 139851633 139862613 - Bnip3 protein_coding processed_transcript MGP_AJ_T0087378.1 MGP_AJ_G0033126.1 mouse_genomes_project 7 139851803 139862573 - Bnip3 protein_coding processed_transcript MGP_AJ_T0005313.1 MGP_AJ_G0004504.1 mouse_genomes_project 7 144117052 144122630 - Gm28821 antisense antisense MGP_AJ_T0084022.1 MGP_AJ_G0032240.1 mouse_genomes_project 7 45599693 45642848 - MGP_AJ_P0084022 Ush1c protein_coding protein_coding MGP_AJ_T0084023.1 MGP_AJ_G0032240.1 mouse_genomes_project 7 45599700 45642846 - MGP_AJ_P0084023 Ush1c protein_coding nonsense_mediated_decay MGP_AJ_T0084024.1 MGP_AJ_G0032240.1 mouse_genomes_project 7 45599700 45642859 - MGP_AJ_P0084024 Ush1c protein_coding protein_coding MGP_AJ_T0084025.1 MGP_AJ_G0032240.1 mouse_genomes_project 7 45599974 45642820 - MGP_AJ_P0084025 Ush1c protein_coding protein_coding MGP_AJ_T0084026.1 MGP_AJ_G0032240.1 mouse_genomes_project 7 45599993 45642854 - MGP_AJ_P0084026 Ush1c protein_coding protein_coding MGP_AJ_T0084027.1 MGP_AJ_G0032240.1 mouse_genomes_project 7 45599994 45634609 - MGP_AJ_P0084027 Ush1c protein_coding protein_coding MGP_AJ_T0084028.1 MGP_AJ_G0032240.1 mouse_genomes_project 7 45600013 45606091 - Ush1c protein_coding retained_intron MGP_AJ_T0084029.1 MGP_AJ_G0032240.1 mouse_genomes_project 7 45605367 45624042 - Ush1c protein_coding processed_transcript MGP_AJ_T0002203.1 MGP_AJ_G0002115.1 mouse_genomes_project 7 32833328 32837209 + TEC TEC MGP_AJ_T0086955.1 MGP_AJ_G0033037.1 mouse_genomes_project 7 128624840 128643176 + MGP_AJ_P0086955 protein_coding nonsense_mediated_decay MGP_AJ_T0086956.1 MGP_AJ_G0033037.1 mouse_genomes_project 7 128638670 128641396 + MGP_AJ_P0086956 protein_coding nonsense_mediated_decay MGP_AJ_T0008920.1 MGP_AJ_G0007201.1 mouse_genomes_project 7 73047922 73048302 - Gm28746 lincRNA lincRNA MGP_AJ_T0015844.1 MGP_AJ_G0013939.1 mouse_genomes_project 7 63701020 63701280 + processed_pseudogene processed_pseudogene MGP_AJ_T0085501.1 MGP_AJ_G0032584.1 mouse_genomes_project 7 102799542 102827147 + MGP_AJ_P0085501 Rrm1 protein_coding protein_coding MGP_AJ_T0084805.1 MGP_AJ_G0032402.1 mouse_genomes_project 7 81065538 81117816 + MGP_AJ_P0084805 Zfp592 protein_coding protein_coding MGP_AJ_T0084806.1 MGP_AJ_G0032402.1 mouse_genomes_project 7 81096086 81097260 + Zfp592 protein_coding processed_transcript MGP_AJ_T0084807.1 MGP_AJ_G0032402.1 mouse_genomes_project 7 81110456 81111018 + Zfp592 protein_coding retained_intron MGP_AJ_T0084808.1 MGP_AJ_G0032402.1 mouse_genomes_project 7 81110732 81114105 + Zfp592 protein_coding retained_intron MGP_AJ_T0002318.1 MGP_AJ_G0002229.1 mouse_genomes_project 7 135019439 135023897 - TEC TEC MGP_AJ_T0085970.1 MGP_AJ_G0032844.1 mouse_genomes_project 7 111527790 111540132 - MGP_AJ_P0085970 Lyve1 protein_coding protein_coding MGP_AJ_T0087810.1 MGP_AJ_G0033240.1 mouse_genomes_project 7 143453427 143487487 + MGP_AJ_P0087810 Lsp1 protein_coding protein_coding MGP_AJ_T0087811.1 MGP_AJ_G0033240.1 mouse_genomes_project 7 143453464 143487487 + MGP_AJ_P0087811 Lsp1 protein_coding protein_coding MGP_AJ_T0087812.1 MGP_AJ_G0033240.1 mouse_genomes_project 7 143453482 143487223 + MGP_AJ_P0087812 Lsp1 protein_coding protein_coding MGP_AJ_T0087813.1 MGP_AJ_G0033240.1 mouse_genomes_project 7 143464461 143487219 + MGP_AJ_P0087813 Lsp1 protein_coding protein_coding MGP_AJ_T0087814.1 MGP_AJ_G0033240.1 mouse_genomes_project 7 143464490 143480991 + Lsp1 protein_coding retained_intron MGP_AJ_T0087815.1 MGP_AJ_G0033240.1 mouse_genomes_project 7 143464769 143487220 + MGP_AJ_P0087815 Lsp1 protein_coding protein_coding MGP_AJ_T0087816.1 MGP_AJ_G0033240.1 mouse_genomes_project 7 143467612 143479124 + Lsp1 protein_coding processed_transcript MGP_AJ_T0087817.1 MGP_AJ_G0033240.1 mouse_genomes_project 7 143469631 143487487 + Lsp1 protein_coding processed_transcript MGP_AJ_T0087818.1 MGP_AJ_G0033240.1 mouse_genomes_project 7 143475878 143482603 + Lsp1 protein_coding processed_transcript MGP_AJ_T0087819.1 MGP_AJ_G0033240.1 mouse_genomes_project 7 143476023 143479100 + Lsp1 protein_coding processed_transcript MGP_AJ_T0087820.1 MGP_AJ_G0033240.1 mouse_genomes_project 7 143481636 143483042 + Lsp1 protein_coding retained_intron MGP_AJ_T0087821.1 MGP_AJ_G0033240.1 mouse_genomes_project 7 143482432 143487137 + Lsp1 protein_coding retained_intron MGP_AJ_T0009052.1 MGP_AJ_G0007284.1 mouse_genomes_project 7 131618960 131620966 - Etos1 lincRNA lincRNA MGP_AJ_T0015864.1 MGP_AJ_G0013959.1 mouse_genomes_project 7 79419333 79419541 - processed_pseudogene processed_pseudogene MGP_AJ_T0087570.1 MGP_AJ_G0033192.1 mouse_genomes_project 7 142079655 142089044 - MGP_AJ_P0087570 Sigirr protein_coding protein_coding MGP_AJ_T0085326.1 MGP_AJ_G0032553.1 mouse_genomes_project 7 101227525 101256302 - MGP_AJ_P0085326 P2ry6 protein_coding protein_coding MGP_AJ_T0082499.1 MGP_AJ_G0031874.1 mouse_genomes_project 7 25121984 25135632 + MGP_AJ_P0082499 Cyp2f2 protein_coding protein_coding MGP_AJ_T0082500.1 MGP_AJ_G0031874.1 mouse_genomes_project 7 25122036 25127333 + Cyp2f2 protein_coding processed_transcript MGP_AJ_T0082501.1 MGP_AJ_G0031874.1 mouse_genomes_project 7 25123868 25133206 + MGP_AJ_P0082501 Cyp2f2 protein_coding protein_coding MGP_AJ_T0015707.1 MGP_AJ_G0013802.1 mouse_genomes_project 7 9977709 9978696 + processed_pseudogene processed_pseudogene MGP_AJ_T0082587.1 MGP_AJ_G0031895.1 mouse_genomes_project 7 25560411 25582038 - MGP_AJ_P0082587 Pld3 protein_coding protein_coding MGP_AJ_T0082588.1 MGP_AJ_G0031895.1 mouse_genomes_project 7 25560411 25582032 - MGP_AJ_P0082588 Pld3 protein_coding protein_coding MGP_AJ_T0082589.1 MGP_AJ_G0031895.1 mouse_genomes_project 7 25560606 25561158 - Pld3 protein_coding retained_intron MGP_AJ_T0082590.1 MGP_AJ_G0031895.1 mouse_genomes_project 7 25561865 25566301 - Pld3 protein_coding retained_intron MGP_AJ_T0082591.1 MGP_AJ_G0031895.1 mouse_genomes_project 7 25568011 25581836 - MGP_AJ_P0082591 Pld3 protein_coding nonsense_mediated_decay MGP_AJ_T0082592.1 MGP_AJ_G0031895.1 mouse_genomes_project 7 25569577 25582004 - MGP_AJ_P0082592 Pld3 protein_coding protein_coding MGP_AJ_T0082593.1 MGP_AJ_G0031895.1 mouse_genomes_project 7 25570112 25571115 - MGP_AJ_P0082593 Pld3 protein_coding protein_coding MGP_AJ_T0082594.1 MGP_AJ_G0031895.1 mouse_genomes_project 7 25571185 25581971 - Pld3 protein_coding processed_transcript MGP_AJ_T0008967.1 MGP_AJ_G0007227.1 mouse_genomes_project 7 84243656 84286811 + Gm26708 lincRNA lincRNA MGP_AJ_T0008942.1 MGP_AJ_G0007218.1 mouse_genomes_project 7 78853704 78856731 - Gm44730 lincRNA lincRNA MGP_AJ_T0085252.1 MGP_AJ_G0032538.1 mouse_genomes_project 7 100456786 100464987 + MGP_AJ_P0085252 Kcne3 protein_coding protein_coding MGP_AJ_T0085253.1 MGP_AJ_G0032538.1 mouse_genomes_project 7 100458826 100464987 + MGP_AJ_P0085253 Kcne3 protein_coding protein_coding MGP_AJ_T0085254.1 MGP_AJ_G0032538.1 mouse_genomes_project 7 100458826 100464987 + MGP_AJ_P0085254 Kcne3 protein_coding protein_coding MGP_AJ_T0085255.1 MGP_AJ_G0032538.1 mouse_genomes_project 7 100458826 100464987 + MGP_AJ_P0085255 Kcne3 protein_coding protein_coding MGP_AJ_T0081604.1 MGP_AJ_G0031580.1 mouse_genomes_project 7 3449196 3450141 + MGP_AJ_P0081604 Olfr1336 protein_coding protein_coding MGP_AJ_T0084538.1 MGP_AJ_G0032357.1 mouse_genomes_project 7 78771022 78778877 - MGP_AJ_P0084538 Mrpl46 protein_coding protein_coding MGP_AJ_T0084539.1 MGP_AJ_G0032357.1 mouse_genomes_project 7 78771386 78779319 - Mrpl46 protein_coding processed_transcript MGP_AJ_T0008846.1 MGP_AJ_G0007144.1 mouse_genomes_project 7 34245392 34252002 + Gm26790 lincRNA lincRNA MGP_AJ_T0086996.1 MGP_AJ_G0033046.1 mouse_genomes_project 7 128749705 128755832 + MGP_AJ_P0086996 Bckdk protein_coding protein_coding MGP_AJ_T0086997.1 MGP_AJ_G0033046.1 mouse_genomes_project 7 128749726 128751581 + Bckdk protein_coding retained_intron MGP_AJ_T0086998.1 MGP_AJ_G0033046.1 mouse_genomes_project 7 128750263 128751790 + MGP_AJ_P0086998 Bckdk protein_coding protein_coding MGP_AJ_T0086999.1 MGP_AJ_G0033046.1 mouse_genomes_project 7 128750385 128754227 + MGP_AJ_P0086999 Bckdk protein_coding protein_coding MGP_AJ_T0087000.1 MGP_AJ_G0033046.1 mouse_genomes_project 7 128750385 128754227 + MGP_AJ_P0087000 Bckdk protein_coding protein_coding MGP_AJ_T0087001.1 MGP_AJ_G0033046.1 mouse_genomes_project 7 128750540 128752002 + MGP_AJ_P0087001 Bckdk protein_coding protein_coding MGP_AJ_T0087002.1 MGP_AJ_G0033046.1 mouse_genomes_project 7 128752858 128754219 + MGP_AJ_P0087002 Bckdk protein_coding protein_coding MGP_AJ_T0084615.1 MGP_AJ_G0032370.1 mouse_genomes_project 7 79674686 79714459 + MGP_AJ_P0084615 Ticrr protein_coding protein_coding MGP_AJ_T0084616.1 MGP_AJ_G0032370.1 mouse_genomes_project 7 79674712 79676166 + Ticrr protein_coding retained_intron MGP_AJ_T0084617.1 MGP_AJ_G0032370.1 mouse_genomes_project 7 79674721 79714445 + MGP_AJ_P0084617 Ticrr protein_coding nonsense_mediated_decay MGP_AJ_T0084618.1 MGP_AJ_G0032370.1 mouse_genomes_project 7 79674735 79700845 + MGP_AJ_P0084618 Ticrr protein_coding nonsense_mediated_decay MGP_AJ_T0084619.1 MGP_AJ_G0032370.1 mouse_genomes_project 7 79674737 79710231 + MGP_AJ_P0084619 Ticrr protein_coding nonsense_mediated_decay MGP_AJ_T0084620.1 MGP_AJ_G0032370.1 mouse_genomes_project 7 79685888 79692059 + Ticrr protein_coding processed_transcript MGP_AJ_T0084621.1 MGP_AJ_G0032370.1 mouse_genomes_project 7 79687279 79692059 + Ticrr protein_coding retained_intron MGP_AJ_T0015760.1 MGP_AJ_G0013855.1 mouse_genomes_project 7 25289859 25290484 - processed_pseudogene processed_pseudogene MGP_AJ_T0010839.1 MGP_AJ_G0008961.1 mouse_genomes_project 7 17032297 17032372 + Mir343 miRNA miRNA MGP_AJ_T0085336.1 MGP_AJ_G0032556.1 mouse_genomes_project 7 101587790 101600255 - MGP_AJ_P0085336 Atg16l2 protein_coding nonsense_mediated_decay MGP_AJ_T0085337.1 MGP_AJ_G0032556.1 mouse_genomes_project 7 101588013 101600316 - MGP_AJ_P0085337 Atg16l2 protein_coding protein_coding MGP_AJ_T0085338.1 MGP_AJ_G0032556.1 mouse_genomes_project 7 101588015 101588858 - Atg16l2 protein_coding retained_intron MGP_AJ_T0085339.1 MGP_AJ_G0032556.1 mouse_genomes_project 7 101588015 101600299 - MGP_AJ_P0085339 Atg16l2 protein_coding protein_coding MGP_AJ_T0085340.1 MGP_AJ_G0032556.1 mouse_genomes_project 7 101588024 101600479 - MGP_AJ_P0085340 Atg16l2 protein_coding nonsense_mediated_decay MGP_AJ_T0085341.1 MGP_AJ_G0032556.1 mouse_genomes_project 7 101588226 101588975 - Atg16l2 protein_coding retained_intron MGP_AJ_T0085342.1 MGP_AJ_G0032556.1 mouse_genomes_project 7 101589042 101590542 - Atg16l2 protein_coding retained_intron MGP_AJ_T0085343.1 MGP_AJ_G0032556.1 mouse_genomes_project 7 101589559 101590545 - Atg16l2 protein_coding retained_intron MGP_AJ_T0085344.1 MGP_AJ_G0032556.1 mouse_genomes_project 7 101589973 101590787 - Atg16l2 protein_coding retained_intron MGP_AJ_T0085345.1 MGP_AJ_G0032556.1 mouse_genomes_project 7 101590402 101595012 - Atg16l2 protein_coding retained_intron MGP_AJ_T0085346.1 MGP_AJ_G0032556.1 mouse_genomes_project 7 101590801 101595025 - MGP_AJ_P0085346 Atg16l2 protein_coding protein_coding MGP_AJ_T0085347.1 MGP_AJ_G0032556.1 mouse_genomes_project 7 101591663 101594955 - Atg16l2 protein_coding retained_intron MGP_AJ_T0085348.1 MGP_AJ_G0032556.1 mouse_genomes_project 7 101594470 101595412 - Atg16l2 protein_coding retained_intron MGP_AJ_T0085349.1 MGP_AJ_G0032556.1 mouse_genomes_project 7 101595137 101600299 - MGP_AJ_P0085349 Atg16l2 protein_coding nonsense_mediated_decay MGP_AJ_T0002295.1 MGP_AJ_G0002206.1 mouse_genomes_project 7 122968787 122969794 - TEC TEC MGP_AJ_T0005160.1 MGP_AJ_G0004394.1 mouse_genomes_project 7 17580445 17587221 + Gm16251 antisense antisense MGP_AJ_T0085652.1 MGP_AJ_G0032700.1 mouse_genomes_project 7 104992830 104993799 + MGP_AJ_P0085652 Olfr659 protein_coding protein_coding MGP_AJ_T0098469.1 MGP_AJ_G0036453.1 mouse_genomes_project 7 102180125 102180738 + pseudogene pseudogene MGP_AJ_T0083081.1 MGP_AJ_G0032011.1 mouse_genomes_project 7 28822467 28832242 - MGP_AJ_P0083081 Cox6b1 protein_coding protein_coding MGP_AJ_T0086792.1 MGP_AJ_G0033003.1 mouse_genomes_project 7 127920979 127923608 + MGP_AJ_P0086792 AI467606 protein_coding protein_coding MGP_AJ_T0086793.1 MGP_AJ_G0033003.1 mouse_genomes_project 7 127921044 127922615 + MGP_AJ_P0086793 AI467606 protein_coding protein_coding MGP_AJ_T0086564.1 MGP_AJ_G0032968.1 mouse_genomes_project 7 127367963 127387839 - MGP_AJ_P0086564 Eif3c protein_coding protein_coding MGP_AJ_T0086565.1 MGP_AJ_G0032968.1 mouse_genomes_project 7 127384180 127387786 - MGP_AJ_P0086565 Eif3c protein_coding protein_coding MGP_AJ_T0086566.1 MGP_AJ_G0032968.1 mouse_genomes_project 7 127384595 127387632 - MGP_AJ_P0086566 Eif3c protein_coding nonsense_mediated_decay MGP_AJ_T0081470.1 MGP_AJ_G0031529.1 mouse_genomes_project 7 1622625 1648621 + MGP_AJ_P0081470 Brsk1 protein_coding protein_coding MGP_AJ_T0081471.1 MGP_AJ_G0031529.1 mouse_genomes_project 7 1622949 1648637 + MGP_AJ_P0081471 Brsk1 protein_coding protein_coding MGP_AJ_T0081472.1 MGP_AJ_G0031529.1 mouse_genomes_project 7 1623101 1637461 + MGP_AJ_P0081472 Brsk1 protein_coding protein_coding MGP_AJ_T0081473.1 MGP_AJ_G0031529.1 mouse_genomes_project 7 1624254 1637461 + MGP_AJ_P0081473 Brsk1 protein_coding protein_coding MGP_AJ_T0081475.1 MGP_AJ_G0031529.1 mouse_genomes_project 7 1641020 1642977 + MGP_AJ_P0081475 Brsk1 protein_coding protein_coding MGP_AJ_T0083868.1 MGP_AJ_G0032199.1 mouse_genomes_project 7 44807498 44808540 + MGP_AJ_P0083868 Lhb protein_coding protein_coding MGP_AJ_T0085280.1 MGP_AJ_G0032544.1 mouse_genomes_project 7 100776324 100784991 + MGP_AJ_P0085280 Ucp2 protein_coding protein_coding MGP_AJ_T0085281.1 MGP_AJ_G0032544.1 mouse_genomes_project 7 100776351 100779918 + Ucp2 protein_coding retained_intron MGP_AJ_T0085282.1 MGP_AJ_G0032544.1 mouse_genomes_project 7 100776780 100780133 + MGP_AJ_P0085282 Ucp2 protein_coding protein_coding MGP_AJ_T0085283.1 MGP_AJ_G0032544.1 mouse_genomes_project 7 100777052 100780275 + MGP_AJ_P0085283 Ucp2 protein_coding protein_coding MGP_AJ_T0085284.1 MGP_AJ_G0032544.1 mouse_genomes_project 7 100779048 100781226 + MGP_AJ_P0085284 Ucp2 protein_coding protein_coding MGP_AJ_T0085285.1 MGP_AJ_G0032544.1 mouse_genomes_project 7 100780165 100781595 + Ucp2 protein_coding processed_transcript MGP_AJ_T0085286.1 MGP_AJ_G0032544.1 mouse_genomes_project 7 100780237 100781710 + Ucp2 protein_coding processed_transcript MGP_AJ_T0085287.1 MGP_AJ_G0032544.1 mouse_genomes_project 7 100781110 100781581 + Ucp2 protein_coding processed_transcript MGP_AJ_T0085288.1 MGP_AJ_G0032544.1 mouse_genomes_project 7 100781315 100782272 + Ucp2 protein_coding processed_transcript MGP_AJ_T0008849.1 MGP_AJ_G0007147.1 mouse_genomes_project 7 35053435 35057178 + Gm29129 lincRNA lincRNA MGP_AJ_T0002297.1 MGP_AJ_G0002208.1 mouse_genomes_project 7 123175494 123177216 + TEC TEC MGP_AJ_T0015839.1 MGP_AJ_G0013934.1 mouse_genomes_project 7 56961703 56963103 + processed_pseudogene processed_pseudogene MGP_AJ_T0015828.1 MGP_AJ_G0013923.1 mouse_genomes_project 7 52719343 52719568 + processed_pseudogene processed_pseudogene MGP_AJ_T0005305.1 MGP_AJ_G0004499.1 mouse_genomes_project 7 133899397 133903368 - Gm15718 antisense antisense MGP_AJ_T0082251.1 MGP_AJ_G0031811.1 mouse_genomes_project 7 22333944 22341793 + MGP_AJ_P0082251 Irgq protein_coding protein_coding MGP_AJ_T0101426.1 MGP_AJ_G0039392.1 mouse_genomes_project 7 68810749 68810886 - Gm23795 snoRNA snoRNA MGP_AJ_T0082645.1 MGP_AJ_G0031908.1 mouse_genomes_project 7 26161734 26214422 + MGP_AJ_P0082645 Fcgbp protein_coding protein_coding MGP_AJ_T0082646.1 MGP_AJ_G0031908.1 mouse_genomes_project 7 26161734 26214422 + MGP_AJ_P0082646 Fcgbp protein_coding protein_coding MGP_AJ_T0082647.1 MGP_AJ_G0031908.1 mouse_genomes_project 7 26162076 26173186 + Fcgbp protein_coding retained_intron MGP_AJ_T0082649.1 MGP_AJ_G0031908.1 mouse_genomes_project 7 26183924 26218876 + Fcgbp protein_coding retained_intron MGP_AJ_T0082847.1 MGP_AJ_G0031961.1 mouse_genomes_project 7 27493821 27551607 - MGP_AJ_P0082847 Sipa1l3 protein_coding protein_coding MGP_AJ_T0082848.1 MGP_AJ_G0031961.1 mouse_genomes_project 7 27493827 27528398 - Sipa1l3 protein_coding retained_intron MGP_AJ_T0082849.1 MGP_AJ_G0031961.1 mouse_genomes_project 7 27493827 27678738 - MGP_AJ_P0082849 Sipa1l3 protein_coding protein_coding MGP_AJ_T0082850.1 MGP_AJ_G0031961.1 mouse_genomes_project 7 27493827 27678738 - MGP_AJ_P0082850 Sipa1l3 protein_coding protein_coding MGP_AJ_T0082851.1 MGP_AJ_G0031961.1 mouse_genomes_project 7 27494781 27528320 - Sipa1l3 protein_coding retained_intron MGP_AJ_T0082852.1 MGP_AJ_G0031961.1 mouse_genomes_project 7 27495274 27502147 - MGP_AJ_P0082852 Sipa1l3 protein_coding protein_coding MGP_AJ_T0082853.1 MGP_AJ_G0031961.1 mouse_genomes_project 7 27495569 27541822 - MGP_AJ_P0082853 Sipa1l3 protein_coding protein_coding MGP_AJ_T0082854.1 MGP_AJ_G0031961.1 mouse_genomes_project 7 27496843 27515041 - Sipa1l3 protein_coding retained_intron MGP_AJ_T0082855.1 MGP_AJ_G0031961.1 mouse_genomes_project 7 27504262 27512234 - Sipa1l3 protein_coding retained_intron MGP_AJ_T0082856.1 MGP_AJ_G0031961.1 mouse_genomes_project 7 27539588 27541295 - Sipa1l3 protein_coding retained_intron MGP_AJ_T0082857.1 MGP_AJ_G0031961.1 mouse_genomes_project 7 27540707 27541830 - MGP_AJ_P0082857 Sipa1l3 protein_coding protein_coding MGP_AJ_T0082858.1 MGP_AJ_G0031961.1 mouse_genomes_project 7 27544789 27551747 - Sipa1l3 protein_coding retained_intron MGP_AJ_T0082859.1 MGP_AJ_G0031961.1 mouse_genomes_project 7 27558257 27678730 - Sipa1l3 protein_coding processed_transcript MGP_AJ_T0082860.1 MGP_AJ_G0031961.1 mouse_genomes_project 7 27574572 27694745 - MGP_AJ_P0082860 Sipa1l3 protein_coding protein_coding MGP_AJ_T0082861.1 MGP_AJ_G0031961.1 mouse_genomes_project 7 27574677 27694774 - Sipa1l3 protein_coding processed_transcript MGP_AJ_T0082862.1 MGP_AJ_G0031961.1 mouse_genomes_project 7 27574750 27694748 - Sipa1l3 protein_coding processed_transcript MGP_AJ_T0082863.1 MGP_AJ_G0031961.1 mouse_genomes_project 7 27667970 27694693 - Sipa1l3 protein_coding processed_transcript MGP_AJ_T0082864.1 MGP_AJ_G0031961.1 mouse_genomes_project 7 27692903 27694688 - Sipa1l3 protein_coding processed_transcript MGP_AJ_T0083527.1 MGP_AJ_G0032113.1 mouse_genomes_project 7 42599692 42617054 - MGP_AJ_P0083527 Iglon5 protein_coding protein_coding MGP_AJ_T0083528.1 MGP_AJ_G0032113.1 mouse_genomes_project 7 42600974 42605022 - MGP_AJ_P0083528 Iglon5 protein_coding protein_coding MGP_AJ_T0005219.1 MGP_AJ_G0004438.1 mouse_genomes_project 7 64208093 64216340 - Gm20457 antisense antisense MGP_AJ_T0084937.1 MGP_AJ_G0032447.1 mouse_genomes_project 7 86514179 86515191 - MGP_AJ_P0084937 Olfr307 protein_coding protein_coding MGP_AJ_T0005299.1 MGP_AJ_G0004495.1 mouse_genomes_project 7 129610532 129611630 - Gm44672 antisense antisense MGP_AJ_T0086939.1 MGP_AJ_G0033034.1 mouse_genomes_project 7 128583708 128588883 + MGP_AJ_P0086939 Fbxl19 protein_coding protein_coding MGP_AJ_T0086940.1 MGP_AJ_G0033034.1 mouse_genomes_project 7 128584368 128607798 + MGP_AJ_P0086940 Fbxl19 protein_coding protein_coding MGP_AJ_T0086941.1 MGP_AJ_G0033034.1 mouse_genomes_project 7 128584937 128588886 + MGP_AJ_P0086941 Fbxl19 protein_coding protein_coding MGP_AJ_T0086942.1 MGP_AJ_G0033034.1 mouse_genomes_project 7 128584953 128608347 + MGP_AJ_P0086942 Fbxl19 protein_coding protein_coding MGP_AJ_T0086943.1 MGP_AJ_G0033034.1 mouse_genomes_project 7 128585943 128607799 + MGP_AJ_P0086943 Fbxl19 protein_coding protein_coding MGP_AJ_T0086944.1 MGP_AJ_G0033034.1 mouse_genomes_project 7 128587315 128607593 + MGP_AJ_P0086944 Fbxl19 protein_coding protein_coding MGP_AJ_T0086945.1 MGP_AJ_G0033034.1 mouse_genomes_project 7 128587442 128608354 + MGP_AJ_P0086945 Fbxl19 protein_coding protein_coding MGP_AJ_T0015806.1 MGP_AJ_G0013901.1 mouse_genomes_project 7 40519682 40520332 - processed_pseudogene processed_pseudogene MGP_AJ_T0081811.1 MGP_AJ_G0031672.1 mouse_genomes_project 7 13591180 13622740 + MGP_AJ_P0081811 Slc8a2 protein_coding protein_coding MGP_AJ_T0002214.1 MGP_AJ_G0002126.1 mouse_genomes_project 7 36147858 36151118 - TEC TEC MGP_AJ_T0101405.1 MGP_AJ_G0039371.1 mouse_genomes_project 7 43601559 43601652 + Gm23991 snoRNA snoRNA MGP_AJ_T0085607.1 MGP_AJ_G0032682.1 mouse_genomes_project 7 104605720 104612346 - MGP_AJ_P0085607 Olfr649 protein_coding protein_coding MGP_AJ_T0085608.1 MGP_AJ_G0032682.1 mouse_genomes_project 7 104605721 104606660 - MGP_AJ_P0085608 Olfr649 protein_coding protein_coding MGP_AJ_T0101400.1 MGP_AJ_G0039366.1 mouse_genomes_project 7 33390048 33390178 - Gm25922 snoRNA snoRNA MGP_AJ_T0087204.1 MGP_AJ_G0033082.1 mouse_genomes_project 7 132236517 132240426 - MGP_AJ_P0087204 1700007K09Rik protein_coding protein_coding MGP_AJ_T0087205.1 MGP_AJ_G0033082.1 mouse_genomes_project 7 132236672 132238235 - MGP_AJ_P0087205 1700007K09Rik protein_coding protein_coding MGP_AJ_T0102816.1 MGP_AJ_G0040556.1 mouse_genomes_project 7 39682558 39687179 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0084056.1 MGP_AJ_G0032247.1 mouse_genomes_project 7 46132498 46136163 - MGP_AJ_P0084056 Saa3 protein_coding protein_coding MGP_AJ_T0082556.1 MGP_AJ_G0031887.1 mouse_genomes_project 7 25362278 25375955 - MGP_AJ_P0082556 Shkbp1 protein_coding protein_coding MGP_AJ_T0082557.1 MGP_AJ_G0031887.1 mouse_genomes_project 7 25362282 25375890 - Shkbp1 protein_coding retained_intron MGP_AJ_T0082558.1 MGP_AJ_G0031887.1 mouse_genomes_project 7 25362282 25375679 - Shkbp1 protein_coding retained_intron MGP_AJ_T0082559.1 MGP_AJ_G0031887.1 mouse_genomes_project 7 25362283 25365718 - Shkbp1 protein_coding processed_transcript MGP_AJ_T0082560.1 MGP_AJ_G0031887.1 mouse_genomes_project 7 25362557 25363068 - Shkbp1 protein_coding retained_intron MGP_AJ_T0082561.1 MGP_AJ_G0031887.1 mouse_genomes_project 7 25363294 25368530 - Shkbp1 protein_coding processed_transcript MGP_AJ_T0082562.1 MGP_AJ_G0031887.1 mouse_genomes_project 7 25365094 25367552 - Shkbp1 protein_coding retained_intron MGP_AJ_T0082563.1 MGP_AJ_G0031887.1 mouse_genomes_project 7 25368202 25370609 - Shkbp1 protein_coding retained_intron MGP_AJ_T0082564.1 MGP_AJ_G0031887.1 mouse_genomes_project 7 25371646 25375695 - Shkbp1 protein_coding retained_intron MGP_AJ_T0082565.1 MGP_AJ_G0031887.1 mouse_genomes_project 7 25371687 25375858 - Shkbp1 protein_coding processed_transcript MGP_AJ_T0082567.1 MGP_AJ_G0031887.1 mouse_genomes_project 7 25374026 25375707 - Shkbp1 protein_coding retained_intron MGP_AJ_T0086286.1 MGP_AJ_G0032912.1 mouse_genomes_project 7 121153454 121225672 + MGP_AJ_P0086286 Abca16 protein_coding nonsense_mediated_decay MGP_AJ_T0086287.1 MGP_AJ_G0032912.1 mouse_genomes_project 7 121165747 121284357 + MGP_AJ_P0086287 Abca16 protein_coding protein_coding MGP_AJ_T0086288.1 MGP_AJ_G0032912.1 mouse_genomes_project 7 121165747 121284357 + MGP_AJ_P0086288 Abca16 protein_coding protein_coding MGP_AJ_T0086289.1 MGP_AJ_G0032912.1 mouse_genomes_project 7 121221366 121235120 + Abca16 protein_coding retained_intron MGP_AJ_T0008833.1 MGP_AJ_G0007132.1 mouse_genomes_project 7 28408909 28411366 + lincRNA lincRNA MGP_AJ_T0081857.1 MGP_AJ_G0031685.1 mouse_genomes_project 7 14141747 14147725 - MGP_AJ_P0081857 Ceacam15 protein_coding protein_coding MGP_AJ_T0081732.1 MGP_AJ_G0031643.1 mouse_genomes_project 7 10481122 10482073 + MGP_AJ_P0081732 Vmn1r89 protein_coding protein_coding MGP_AJ_T0087247.1 MGP_AJ_G0033097.1 mouse_genomes_project 7 133631337 133697328 - MGP_AJ_P0087247 Fam53b protein_coding protein_coding MGP_AJ_T0087248.1 MGP_AJ_G0033097.1 mouse_genomes_project 7 133676640 133731581 - MGP_AJ_P0087248 Fam53b protein_coding protein_coding MGP_AJ_T0087249.1 MGP_AJ_G0033097.1 mouse_genomes_project 7 133676640 133704287 - MGP_AJ_P0087249 Fam53b protein_coding protein_coding MGP_AJ_T0087250.1 MGP_AJ_G0033097.1 mouse_genomes_project 7 133677475 133732215 - MGP_AJ_P0087250 Fam53b protein_coding protein_coding MGP_AJ_T0087251.1 MGP_AJ_G0033097.1 mouse_genomes_project 7 133696485 133725830 - MGP_AJ_P0087251 Fam53b protein_coding protein_coding MGP_AJ_T0087252.1 MGP_AJ_G0033097.1 mouse_genomes_project 7 133696596 133697673 - Fam53b protein_coding processed_transcript MGP_AJ_T0087253.1 MGP_AJ_G0033097.1 mouse_genomes_project 7 133696655 133721200 - Fam53b protein_coding processed_transcript MGP_AJ_T0025097.1 MGP_AJ_G0017172.1 mouse_genomes_project 10 41125070 41141038 - MGP_AJ_P0025097 1700021F05Rik protein_coding protein_coding MGP_AJ_T0025098.1 MGP_AJ_G0017172.1 mouse_genomes_project 10 41125082 41141012 - MGP_AJ_P0025098 1700021F05Rik protein_coding protein_coding MGP_AJ_T0025099.1 MGP_AJ_G0017172.1 mouse_genomes_project 10 41125108 41125793 - 1700021F05Rik protein_coding processed_transcript MGP_AJ_T0025100.1 MGP_AJ_G0017172.1 mouse_genomes_project 10 41133210 41141038 - 1700021F05Rik protein_coding processed_transcript MGP_AJ_T0027325.1 MGP_AJ_G0017796.1 mouse_genomes_project 10 125710915 125725216 - MGP_AJ_P0027325 Inhbc protein_coding protein_coding MGP_AJ_T0017117.1 MGP_AJ_G0015110.1 mouse_genomes_project 10 59113155 59138853 - Gm28447 processed_transcript antisense MGP_AJ_T0017118.1 MGP_AJ_G0015110.1 mouse_genomes_project 10 59119003 59119980 - Gm28447 processed_transcript retained_intron MGP_AJ_T0098892.1 MGP_AJ_G0036875.1 mouse_genomes_project 10 91844800 91845515 + sense_intronic sense_intronic MGP_AJ_T0025086.1 MGP_AJ_G0017167.1 mouse_genomes_project 10 40577723 40751221 - MGP_AJ_P0025086 Sobp protein_coding protein_coding MGP_AJ_T0025087.1 MGP_AJ_G0017167.1 mouse_genomes_project 10 40749484 40751212 - MGP_AJ_P0025087 Sobp protein_coding protein_coding MGP_AJ_T0025539.1 MGP_AJ_G0017307.1 mouse_genomes_project 10 65949994 66063213 - MGP_AJ_P0025539 1700040L02Rik protein_coding protein_coding MGP_AJ_T0025540.1 MGP_AJ_G0017307.1 mouse_genomes_project 10 65955321 66046447 - MGP_AJ_P0025540 1700040L02Rik protein_coding protein_coding MGP_AJ_T0006093.1 MGP_AJ_G0005099.1 mouse_genomes_project 10 40330565 40332605 - Gm26860 lincRNA lincRNA MGP_AJ_T0006082.1 MGP_AJ_G0005089.1 mouse_genomes_project 10 18756317 18778077 + Gm5420 lincRNA lincRNA MGP_AJ_T0006083.1 MGP_AJ_G0005089.1 mouse_genomes_project 10 18760749 18762376 + Gm5420 lincRNA lincRNA MGP_AJ_T0025061.1 MGP_AJ_G0017162.1 mouse_genomes_project 10 40058611 40092166 + MGP_AJ_P0025061 Snx3 protein_coding protein_coding MGP_AJ_T0025062.1 MGP_AJ_G0017162.1 mouse_genomes_project 10 40058612 40092749 + MGP_AJ_P0025062 Snx3 protein_coding protein_coding MGP_AJ_T0025063.1 MGP_AJ_G0017162.1 mouse_genomes_project 10 40058871 40092760 + MGP_AJ_P0025063 Snx3 protein_coding protein_coding MGP_AJ_T0027593.1 MGP_AJ_G0017908.1 mouse_genomes_project 10 128467507 128468464 - MGP_AJ_P0027593 Olfr818 protein_coding protein_coding MGP_AJ_T0027594.1 MGP_AJ_G0017908.1 mouse_genomes_project 10 128467749 128471494 - MGP_AJ_P0027594 Olfr818 protein_coding protein_coding MGP_AJ_T0006159.1 MGP_AJ_G0005142.1 mouse_genomes_project 10 115159278 115161968 + D630029K05Rik lincRNA lincRNA MGP_AJ_T0006160.1 MGP_AJ_G0005142.1 mouse_genomes_project 10 115159311 115162154 + D630029K05Rik lincRNA lincRNA MGP_AJ_T0006161.1 MGP_AJ_G0005142.1 mouse_genomes_project 10 115160326 115162284 + D630029K05Rik lincRNA lincRNA MGP_AJ_T0006162.1 MGP_AJ_G0005142.1 mouse_genomes_project 10 115160845 115163677 + D630029K05Rik lincRNA lincRNA MGP_AJ_T0026533.1 MGP_AJ_G0017549.1 mouse_genomes_project 10 79878940 79892053 + MGP_AJ_P0026533 Zfp873 protein_coding protein_coding MGP_AJ_T0009604.1 MGP_AJ_G0007726.1 mouse_genomes_project 10 78150311 78150394 + Gm22721 miRNA miRNA MGP_AJ_T0027536.1 MGP_AJ_G0017866.1 mouse_genomes_project 10 127391677 127416124 + MGP_AJ_P0027536 Itga7 protein_coding protein_coding MGP_AJ_T0009577.1 MGP_AJ_G0007699.1 mouse_genomes_project 10 25536308 25536391 - Gm22370 miRNA miRNA MGP_AJ_T0024364.1 MGP_AJ_G0016952.1 mouse_genomes_project 10 644818 854788 + Plekhg1 protein_coding retained_intron MGP_AJ_T0024365.1 MGP_AJ_G0016952.1 mouse_genomes_project 10 645162 854757 + Plekhg1 protein_coding retained_intron MGP_AJ_T0024366.1 MGP_AJ_G0016952.1 mouse_genomes_project 10 779387 884332 + MGP_AJ_P0024366 Plekhg1 protein_coding protein_coding MGP_AJ_T0024367.1 MGP_AJ_G0016952.1 mouse_genomes_project 10 784649 881577 + MGP_AJ_P0024367 Plekhg1 protein_coding protein_coding MGP_AJ_T0024368.1 MGP_AJ_G0016952.1 mouse_genomes_project 10 817555 833425 + Plekhg1 protein_coding retained_intron MGP_AJ_T0024369.1 MGP_AJ_G0016952.1 mouse_genomes_project 10 817559 884326 + MGP_AJ_P0024369 Plekhg1 protein_coding protein_coding MGP_AJ_T0024370.1 MGP_AJ_G0016952.1 mouse_genomes_project 10 874893 880554 + MGP_AJ_P0024370 Plekhg1 protein_coding nonsense_mediated_decay MGP_AJ_T0026286.1 MGP_AJ_G0017487.1 mouse_genomes_project 10 78391996 78396571 + MGP_AJ_P0026286 Adat3 protein_coding protein_coding MGP_AJ_T0026289.1 MGP_AJ_G0017487.1 mouse_genomes_project 10 78394951 78404691 + MGP_AJ_P0026289 Adat3 protein_coding protein_coding MGP_AJ_T0012385.1 MGP_AJ_G0010480.1 mouse_genomes_project 10 4583808 4584538 - processed_pseudogene processed_pseudogene MGP_AJ_T0101702.1 MGP_AJ_G0039653.1 mouse_genomes_project 10 86800849 86802410 - transcribed_processed_pseudogene processed_transcript MGP_AJ_T0101703.1 MGP_AJ_G0039653.1 mouse_genomes_project 10 86801628 86802025 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0027583.1 MGP_AJ_G0017900.1 mouse_genomes_project 10 128282758 128285712 + MGP_AJ_P0027583 Olfr808 protein_coding protein_coding MGP_AJ_T0027584.1 MGP_AJ_G0017900.1 mouse_genomes_project 10 128284773 128285712 + MGP_AJ_P0027584 Olfr808 protein_coding protein_coding MGP_AJ_T0025239.1 MGP_AJ_G0017228.1 mouse_genomes_project 10 56153567 56158172 - MGP_AJ_P0025239 Gm17542 protein_coding protein_coding MGP_AJ_T0026670.1 MGP_AJ_G0017593.1 mouse_genomes_project 10 84813375 84814031 - MGP_AJ_P0026670 Fabp3-ps1 protein_coding protein_coding MGP_AJ_T0026302.1 MGP_AJ_G0017493.1 mouse_genomes_project 10 78492913 78495603 + MGP_AJ_P0026302 Izumo4 protein_coding protein_coding MGP_AJ_T0009590.1 MGP_AJ_G0007712.1 mouse_genomes_project 10 59304578 59304663 + Mir5108 miRNA miRNA MGP_AJ_T0024897.1 MGP_AJ_G0017112.1 mouse_genomes_project 10 31577576 31582744 - MGP_AJ_P0024897 Fam26e protein_coding protein_coding MGP_AJ_T0100522.1 MGP_AJ_G0038488.1 mouse_genomes_project 10 44308154 44308285 - Gm23481 snoRNA snoRNA MGP_AJ_T0027189.1 MGP_AJ_G0017747.1 mouse_genomes_project 10 118407831 118466389 - MGP_AJ_P0027189 Irak3 protein_coding nonsense_mediated_decay MGP_AJ_T0027190.1 MGP_AJ_G0017747.1 mouse_genomes_project 10 118408383 118466350 - MGP_AJ_P0027190 Irak3 protein_coding protein_coding MGP_AJ_T0027191.1 MGP_AJ_G0017747.1 mouse_genomes_project 10 118425594 118435714 - Irak3 protein_coding processed_transcript MGP_AJ_T0027192.1 MGP_AJ_G0017747.1 mouse_genomes_project 10 118430422 118466478 - Irak3 protein_coding retained_intron MGP_AJ_T0024906.1 MGP_AJ_G0017118.1 mouse_genomes_project 10 31892084 31899165 + MGP_AJ_P0024906 Col10a1 protein_coding protein_coding MGP_AJ_T0006119.1 MGP_AJ_G0005119.1 mouse_genomes_project 10 80748488 80761468 + 1700028I16Rik lincRNA lincRNA MGP_AJ_T0024462.1 MGP_AJ_G0016970.1 mouse_genomes_project 10 4086190 4102654 - MGP_AJ_P0024462 Cnksr3 protein_coding protein_coding MGP_AJ_T0024463.1 MGP_AJ_G0016970.1 mouse_genomes_project 10 4086190 4182397 - MGP_AJ_P0024463 Cnksr3 protein_coding protein_coding MGP_AJ_T0100523.1 MGP_AJ_G0038489.1 mouse_genomes_project 10 46038587 46038716 + Gm23584 snoRNA snoRNA MGP_AJ_T0009631.1 MGP_AJ_G0007753.1 mouse_genomes_project 10 119913978 119914054 - Gm24330 miRNA miRNA MGP_AJ_T0024755.1 MGP_AJ_G0017051.1 mouse_genomes_project 10 21101985 21134237 + MGP_AJ_P0024755 Slc18b1 protein_coding protein_coding MGP_AJ_T0024756.1 MGP_AJ_G0017051.1 mouse_genomes_project 10 21101985 21134237 + MGP_AJ_P0024756 Slc18b1 protein_coding protein_coding MGP_AJ_T0024757.1 MGP_AJ_G0017051.1 mouse_genomes_project 10 21102051 21111957 + MGP_AJ_P0024757 Slc18b1 protein_coding nonsense_mediated_decay MGP_AJ_T0024758.1 MGP_AJ_G0017051.1 mouse_genomes_project 10 21102199 21111909 + MGP_AJ_P0024758 Slc18b1 protein_coding protein_coding MGP_AJ_T0024759.1 MGP_AJ_G0017051.1 mouse_genomes_project 10 21111973 21124632 + MGP_AJ_P0024759 Slc18b1 protein_coding nonsense_mediated_decay MGP_AJ_T0024760.1 MGP_AJ_G0017051.1 mouse_genomes_project 10 21130040 21132630 + Slc18b1 protein_coding retained_intron MGP_AJ_T0003040.1 MGP_AJ_G0002838.1 mouse_genomes_project 10 60611041 60612906 - Gm16143 antisense antisense MGP_AJ_T0026820.1 MGP_AJ_G0017623.1 mouse_genomes_project 10 89200649 89208728 - MGP_AJ_P0026820 Slc25a3 protein_coding protein_coding MGP_AJ_T0026821.1 MGP_AJ_G0017623.1 mouse_genomes_project 10 89200866 89208626 - MGP_AJ_P0026821 Slc25a3 protein_coding nonsense_mediated_decay MGP_AJ_T0026822.1 MGP_AJ_G0017623.1 mouse_genomes_project 10 89200867 89208672 - MGP_AJ_P0026822 Slc25a3 protein_coding protein_coding MGP_AJ_T0026823.1 MGP_AJ_G0017623.1 mouse_genomes_project 10 89200883 89208624 - MGP_AJ_P0026823 Slc25a3 protein_coding protein_coding MGP_AJ_T0026824.1 MGP_AJ_G0017623.1 mouse_genomes_project 10 89201086 89204506 - Slc25a3 protein_coding retained_intron MGP_AJ_T0026825.1 MGP_AJ_G0017623.1 mouse_genomes_project 10 89202248 89205394 - Slc25a3 protein_coding processed_transcript MGP_AJ_T0026826.1 MGP_AJ_G0017623.1 mouse_genomes_project 10 89202274 89206892 - Slc25a3 protein_coding retained_intron MGP_AJ_T0026827.1 MGP_AJ_G0017623.1 mouse_genomes_project 10 89204443 89208691 - Slc25a3 protein_coding retained_intron MGP_AJ_T0027420.1 MGP_AJ_G0017824.1 mouse_genomes_project 10 126539018 126588282 - MGP_AJ_P0027420 Rbms2 protein_coding protein_coding MGP_AJ_T0025711.1 MGP_AJ_G0017329.1 mouse_genomes_project 10 72773813 72875595 + MGP_AJ_P0025711 Specc1l protein_coding protein_coding MGP_AJ_T0025712.1 MGP_AJ_G0017329.1 mouse_genomes_project 10 72792304 72875595 + MGP_AJ_P0025712 Specc1l protein_coding protein_coding MGP_AJ_T0025053.1 MGP_AJ_G0017160.1 mouse_genomes_project 10 39724257 39819533 - MGP_AJ_P0025053 Foxo3 protein_coding protein_coding MGP_AJ_T0025054.1 MGP_AJ_G0017160.1 mouse_genomes_project 10 39728241 39819523 - MGP_AJ_P0025054 Foxo3 protein_coding protein_coding MGP_AJ_T0025055.1 MGP_AJ_G0017160.1 mouse_genomes_project 10 39738723 39819477 - MGP_AJ_P0025055 Foxo3 protein_coding protein_coding MGP_AJ_T0025056.1 MGP_AJ_G0017160.1 mouse_genomes_project 10 39740031 39800999 - MGP_AJ_P0025056 Foxo3 protein_coding protein_coding MGP_AJ_T0025057.1 MGP_AJ_G0017160.1 mouse_genomes_project 10 39790021 39819536 - MGP_AJ_P0025057 Foxo3 protein_coding protein_coding MGP_AJ_T0102211.1 MGP_AJ_G0039954.1 mouse_genomes_project 10 75494805 75495256 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0027323.1 MGP_AJ_G0017794.1 mouse_genomes_project 10 125684209 125695918 - MGP_AJ_P0027323 Gli1 protein_coding protein_coding MGP_AJ_T0012399.1 MGP_AJ_G0010494.1 mouse_genomes_project 10 23141719 23142285 - processed_pseudogene processed_pseudogene MGP_AJ_T0026834.1 MGP_AJ_G0017626.1 mouse_genomes_project 10 90890424 91145587 - MGP_AJ_P0026834 Cfap54 protein_coding unknown_likely_coding MGP_AJ_T0026835.1 MGP_AJ_G0017626.1 mouse_genomes_project 10 90890424 91180979 - MGP_AJ_P0026835 Cfap54 protein_coding unknown_likely_coding MGP_AJ_T0026836.1 MGP_AJ_G0017626.1 mouse_genomes_project 10 90890432 91181001 - MGP_AJ_P0026836 Cfap54 protein_coding protein_coding MGP_AJ_T0026837.1 MGP_AJ_G0017626.1 mouse_genomes_project 10 90910444 90944595 - MGP_AJ_P0026837 Cfap54 protein_coding nonsense_mediated_decay MGP_AJ_T0026838.1 MGP_AJ_G0017626.1 mouse_genomes_project 10 91002726 91042390 - Cfap54 protein_coding processed_transcript MGP_AJ_T0026839.1 MGP_AJ_G0017626.1 mouse_genomes_project 10 91017399 91042398 - MGP_AJ_P0026839 Cfap54 protein_coding protein_coding MGP_AJ_T0026840.1 MGP_AJ_G0017626.1 mouse_genomes_project 10 91075775 91141123 - MGP_AJ_P0026840 Cfap54 protein_coding nonsense_mediated_decay MGP_AJ_T0026841.1 MGP_AJ_G0017626.1 mouse_genomes_project 10 91127445 91130828 - Cfap54 protein_coding processed_transcript MGP_AJ_T0026842.1 MGP_AJ_G0017626.1 mouse_genomes_project 10 91134750 91181001 - MGP_AJ_P0026842 Cfap54 protein_coding protein_coding MGP_AJ_T0026843.1 MGP_AJ_G0017626.1 mouse_genomes_project 10 91141718 91180979 - MGP_AJ_P0026843 Cfap54 protein_coding protein_coding MGP_AJ_T0026844.1 MGP_AJ_G0017626.1 mouse_genomes_project 10 91160868 91181001 - Cfap54 protein_coding retained_intron MGP_AJ_T0026845.1 MGP_AJ_G0017626.1 mouse_genomes_project 10 91166454 91169946 - Cfap54 protein_coding processed_transcript MGP_AJ_T0025753.1 MGP_AJ_G0017337.1 mouse_genomes_project 10 73214803 73222193 - MGP_AJ_P0025753 Susd2 protein_coding protein_coding MGP_AJ_T0025754.1 MGP_AJ_G0017337.1 mouse_genomes_project 10 73214803 73222193 - MGP_AJ_P0025754 Susd2 protein_coding protein_coding MGP_AJ_T0012391.1 MGP_AJ_G0010486.1 mouse_genomes_project 10 17579879 17581366 - processed_pseudogene processed_pseudogene MGP_AJ_T0025103.1 MGP_AJ_G0017175.1 mouse_genomes_project 10 41474896 41502567 - MGP_AJ_P0025103 Qrsl1 protein_coding protein_coding MGP_AJ_T0025104.1 MGP_AJ_G0017175.1 mouse_genomes_project 10 41475130 41477813 - Qrsl1 protein_coding retained_intron MGP_AJ_T0025105.1 MGP_AJ_G0017175.1 mouse_genomes_project 10 41481181 41502567 - Qrsl1 protein_coding retained_intron MGP_AJ_T0027158.1 MGP_AJ_G0017740.1 mouse_genomes_project 10 116378801 116406759 + MGP_AJ_P0027158 Mdm1 protein_coding protein_coding MGP_AJ_T0027159.1 MGP_AJ_G0017740.1 mouse_genomes_project 10 116378801 116406759 + MGP_AJ_P0027159 Mdm1 protein_coding protein_coding MGP_AJ_T0027160.1 MGP_AJ_G0017740.1 mouse_genomes_project 10 116378801 116406759 + MGP_AJ_P0027160 Mdm1 protein_coding protein_coding MGP_AJ_T0027161.1 MGP_AJ_G0017740.1 mouse_genomes_project 10 116378801 116406759 + MGP_AJ_P0027161 Mdm1 protein_coding protein_coding MGP_AJ_T0099275.1 MGP_AJ_G0037241.1 mouse_genomes_project 10 77456142 77456249 - Gm25794 snRNA snRNA MGP_AJ_T0025212.1 MGP_AJ_G0017217.1 mouse_genomes_project 10 55494695 55498265 + MGP_AJ_P0025212 Fabp7 protein_coding protein_coding MGP_AJ_T0025213.1 MGP_AJ_G0017217.1 mouse_genomes_project 10 55494737 55496627 + MGP_AJ_P0025213 Fabp7 protein_coding protein_coding MGP_AJ_T0100498.1 MGP_AJ_G0038464.1 mouse_genomes_project 10 6860103 6860234 - Gm25635 snoRNA snoRNA MGP_AJ_T0026326.1 MGP_AJ_G0017504.1 mouse_genomes_project 10 78672600 78692769 + MGP_AJ_P0026326 Tmprss9 protein_coding protein_coding MGP_AJ_T0009585.1 MGP_AJ_G0007707.1 mouse_genomes_project 10 57598756 57598814 + Mir6906 miRNA miRNA MGP_AJ_T0006151.1 MGP_AJ_G0005135.1 mouse_genomes_project 10 101207384 101208247 - Gm17028 lincRNA lincRNA MGP_AJ_T0027131.1 MGP_AJ_G0017732.1 mouse_genomes_project 10 115450529 115453050 + MGP_AJ_P0027131 Gm10936 protein_coding protein_coding MGP_AJ_T0027354.1 MGP_AJ_G0017802.1 mouse_genomes_project 10 125906600 125988974 - MGP_AJ_P0027354 Lrp1 protein_coding protein_coding MGP_AJ_T0027355.1 MGP_AJ_G0017802.1 mouse_genomes_project 10 125907038 125908042 - Lrp1 protein_coding retained_intron MGP_AJ_T0027356.1 MGP_AJ_G0017802.1 mouse_genomes_project 10 125907674 125908587 - Lrp1 protein_coding retained_intron MGP_AJ_T0027357.1 MGP_AJ_G0017802.1 mouse_genomes_project 10 125910638 125911651 - Lrp1 protein_coding retained_intron MGP_AJ_T0027358.1 MGP_AJ_G0017802.1 mouse_genomes_project 10 125914833 125918368 - MGP_AJ_P0027358 Lrp1 protein_coding nonsense_mediated_decay MGP_AJ_T0027359.1 MGP_AJ_G0017802.1 mouse_genomes_project 10 125946172 125949728 - Lrp1 protein_coding retained_intron MGP_AJ_T0027360.1 MGP_AJ_G0017802.1 mouse_genomes_project 10 125949571 125951303 - MGP_AJ_P0027360 Lrp1 protein_coding protein_coding MGP_AJ_T0027361.1 MGP_AJ_G0017802.1 mouse_genomes_project 10 125955450 125988974 - Lrp1 protein_coding retained_intron MGP_AJ_T0027362.1 MGP_AJ_G0017802.1 mouse_genomes_project 10 125956995 125988796 - MGP_AJ_P0027362 Lrp1 protein_coding protein_coding MGP_AJ_T0027363.1 MGP_AJ_G0017802.1 mouse_genomes_project 10 125967685 125988748 - MGP_AJ_P0027363 Lrp1 protein_coding protein_coding MGP_AJ_T0025148.1 MGP_AJ_G0017193.1 mouse_genomes_project 10 49257329 49273938 - MGP_AJ_P0025148 Gprc6a protein_coding protein_coding MGP_AJ_T0025330.1 MGP_AJ_G0017252.1 mouse_genomes_project 10 58609355 58659556 - MGP_AJ_P0025330 Sgpl1 protein_coding protein_coding MGP_AJ_T0025331.1 MGP_AJ_G0017252.1 mouse_genomes_project 10 58609355 58659526 - MGP_AJ_P0025331 Sgpl1 protein_coding protein_coding MGP_AJ_T0025332.1 MGP_AJ_G0017252.1 mouse_genomes_project 10 58609358 58659526 - MGP_AJ_P0025332 Sgpl1 protein_coding nonsense_mediated_decay MGP_AJ_T0025333.1 MGP_AJ_G0017252.1 mouse_genomes_project 10 58611538 58613839 - Sgpl1 protein_coding retained_intron MGP_AJ_T0025334.1 MGP_AJ_G0017252.1 mouse_genomes_project 10 58614908 58616191 - Sgpl1 protein_coding retained_intron MGP_AJ_T0025335.1 MGP_AJ_G0017252.1 mouse_genomes_project 10 58623765 58659585 - MGP_AJ_P0025335 Sgpl1 protein_coding protein_coding MGP_AJ_T0025336.1 MGP_AJ_G0017252.1 mouse_genomes_project 10 58625679 58659558 - MGP_AJ_P0025336 Sgpl1 protein_coding protein_coding MGP_AJ_T0025337.1 MGP_AJ_G0017252.1 mouse_genomes_project 10 58629365 58659534 - Sgpl1 protein_coding processed_transcript MGP_AJ_T0025338.1 MGP_AJ_G0017252.1 mouse_genomes_project 10 58635240 58658780 - MGP_AJ_P0025338 Sgpl1 protein_coding protein_coding MGP_AJ_T0025339.1 MGP_AJ_G0017252.1 mouse_genomes_project 10 58657776 58659486 - Sgpl1 protein_coding retained_intron MGP_AJ_T0024545.1 MGP_AJ_G0016991.1 mouse_genomes_project 10 8261470 8278136 + MGP_AJ_P0024545 Fbxo30 protein_coding protein_coding MGP_AJ_T0024546.1 MGP_AJ_G0016991.1 mouse_genomes_project 10 8261727 8275602 + MGP_AJ_P0024546 Fbxo30 protein_coding protein_coding MGP_AJ_T0024503.1 MGP_AJ_G0016980.1 mouse_genomes_project 10 4884004 4935193 - MGP_AJ_P0024503 Tab2 protein_coding protein_coding MGP_AJ_T0024504.1 MGP_AJ_G0016980.1 mouse_genomes_project 10 4885680 4888852 - Tab2 protein_coding retained_intron MGP_AJ_T0024505.1 MGP_AJ_G0016980.1 mouse_genomes_project 10 4885790 4889838 - Tab2 protein_coding retained_intron MGP_AJ_T0024506.1 MGP_AJ_G0016980.1 mouse_genomes_project 10 4889843 4911561 - MGP_AJ_P0024506 Tab2 protein_coding protein_coding MGP_AJ_T0024507.1 MGP_AJ_G0016980.1 mouse_genomes_project 10 4897690 4902613 - MGP_AJ_P0024507 Tab2 protein_coding protein_coding MGP_AJ_T0027522.1 MGP_AJ_G0017863.1 mouse_genomes_project 10 127365802 127369699 + MGP_AJ_P0027522 Cd63 protein_coding protein_coding MGP_AJ_T0027523.1 MGP_AJ_G0017863.1 mouse_genomes_project 10 127366749 127369699 + MGP_AJ_P0027523 Cd63 protein_coding protein_coding MGP_AJ_T0026370.1 MGP_AJ_G0017516.1 mouse_genomes_project 10 78949958 78965702 - MGP_AJ_P0026370 Pias4 protein_coding protein_coding MGP_AJ_T0026371.1 MGP_AJ_G0017516.1 mouse_genomes_project 10 78950927 78952817 - Pias4 protein_coding retained_intron MGP_AJ_T0026372.1 MGP_AJ_G0017516.1 mouse_genomes_project 10 78952194 78954704 - Pias4 protein_coding retained_intron MGP_AJ_T0026373.1 MGP_AJ_G0017516.1 mouse_genomes_project 10 78952364 78965500 - MGP_AJ_P0026373 Pias4 protein_coding nonsense_mediated_decay MGP_AJ_T0026374.1 MGP_AJ_G0017516.1 mouse_genomes_project 10 78952551 78953952 - MGP_AJ_P0026374 Pias4 protein_coding protein_coding MGP_AJ_T0026375.1 MGP_AJ_G0017516.1 mouse_genomes_project 10 78960823 78965493 - Pias4 protein_coding retained_intron MGP_AJ_T0027018.1 MGP_AJ_G0017689.1 mouse_genomes_project 10 106243188 106359718 + MGP_AJ_P0027018 Ppp1r12a protein_coding unknown_likely_coding MGP_AJ_T0027019.1 MGP_AJ_G0017689.1 mouse_genomes_project 10 106243188 106357305 + MGP_AJ_P0027019 Ppp1r12a protein_coding protein_coding MGP_AJ_T0099286.1 MGP_AJ_G0037252.1 mouse_genomes_project 10 88520777 88520872 + Gm22602 snRNA snRNA MGP_AJ_T0006113.1 MGP_AJ_G0005115.1 mouse_genomes_project 10 75586007 75588705 + 1700009J07Rik lincRNA lincRNA MGP_AJ_T0006114.1 MGP_AJ_G0005115.1 mouse_genomes_project 10 75586010 75588702 + 1700009J07Rik lincRNA lincRNA MGP_AJ_T0006115.1 MGP_AJ_G0005115.1 mouse_genomes_project 10 75586018 75587102 + 1700009J07Rik lincRNA lincRNA MGP_AJ_T0024362.1 MGP_AJ_G0016951.1 mouse_genomes_project 10 446063 460831 + MGP_AJ_P0024362 Iyd protein_coding protein_coding MGP_AJ_T0024363.1 MGP_AJ_G0016951.1 mouse_genomes_project 10 446111 457953 + Iyd protein_coding retained_intron MGP_AJ_T0099264.1 MGP_AJ_G0037230.1 mouse_genomes_project 10 48803919 48804026 + Gm26257 snRNA snRNA MGP_AJ_T0024849.1 MGP_AJ_G0017086.1 mouse_genomes_project 10 26482406 26483319 - MGP_AJ_P0024849 Gm9996 protein_coding protein_coding MGP_AJ_T0024898.1 MGP_AJ_G0017113.1 mouse_genomes_project 10 31612526 31614430 - MGP_AJ_P0024898 Fam26f protein_coding protein_coding MGP_AJ_T0027540.1 MGP_AJ_G0017870.1 mouse_genomes_project 10 127625119 127626203 - MGP_AJ_P0027540 Olfr769 protein_coding protein_coding MGP_AJ_T0026972.1 MGP_AJ_G0017673.1 mouse_genomes_project 10 99831883 100175751 + Mgat4c protein_coding retained_intron MGP_AJ_T0026973.1 MGP_AJ_G0017673.1 mouse_genomes_project 10 99831883 100549905 + MGP_AJ_P0026973 Mgat4c protein_coding protein_coding MGP_AJ_T0026974.1 MGP_AJ_G0017673.1 mouse_genomes_project 10 99832037 100536041 + Mgat4c protein_coding processed_transcript MGP_AJ_T0026975.1 MGP_AJ_G0017673.1 mouse_genomes_project 10 99832037 100536661 + MGP_AJ_P0026975 Mgat4c protein_coding protein_coding MGP_AJ_T0026976.1 MGP_AJ_G0017673.1 mouse_genomes_project 10 99832142 100543527 + MGP_AJ_P0026976 Mgat4c protein_coding protein_coding MGP_AJ_T0026977.1 MGP_AJ_G0017673.1 mouse_genomes_project 10 100323567 100546815 + MGP_AJ_P0026977 Mgat4c protein_coding protein_coding MGP_AJ_T0026978.1 MGP_AJ_G0017673.1 mouse_genomes_project 10 100323567 100549908 + MGP_AJ_P0026978 Mgat4c protein_coding protein_coding MGP_AJ_T0026979.1 MGP_AJ_G0017673.1 mouse_genomes_project 10 100323587 100437937 + Mgat4c protein_coding processed_transcript MGP_AJ_T0026980.1 MGP_AJ_G0017673.1 mouse_genomes_project 10 100323598 100536588 + MGP_AJ_P0026980 Mgat4c protein_coding protein_coding MGP_AJ_T0026981.1 MGP_AJ_G0017673.1 mouse_genomes_project 10 100323614 100437938 + Mgat4c protein_coding processed_transcript MGP_AJ_T0026982.1 MGP_AJ_G0017673.1 mouse_genomes_project 10 100323788 100549908 + MGP_AJ_P0026982 Mgat4c protein_coding protein_coding MGP_AJ_T0026983.1 MGP_AJ_G0017673.1 mouse_genomes_project 10 100532172 100548752 + MGP_AJ_P0026983 Mgat4c protein_coding protein_coding MGP_AJ_T0009627.1 MGP_AJ_G0007749.1 mouse_genomes_project 10 106514897 106514991 + Gm25591 miRNA miRNA MGP_AJ_T0025931.1 MGP_AJ_G0017392.1 mouse_genomes_project 10 75722150 75735643 - MGP_AJ_P0025931 Aire protein_coding protein_coding MGP_AJ_T0025932.1 MGP_AJ_G0017392.1 mouse_genomes_project 10 75722150 75735643 - MGP_AJ_P0025932 Aire protein_coding protein_coding MGP_AJ_T0025933.1 MGP_AJ_G0017392.1 mouse_genomes_project 10 75722150 75735643 - MGP_AJ_P0025933 Aire protein_coding protein_coding MGP_AJ_T0025934.1 MGP_AJ_G0017392.1 mouse_genomes_project 10 75722151 75730297 - Aire protein_coding retained_intron MGP_AJ_T0025935.1 MGP_AJ_G0017392.1 mouse_genomes_project 10 75722151 75735673 - MGP_AJ_P0025935 Aire protein_coding nonsense_mediated_decay MGP_AJ_T0025936.1 MGP_AJ_G0017392.1 mouse_genomes_project 10 75722159 75735643 - MGP_AJ_P0025936 Aire protein_coding protein_coding MGP_AJ_T0025937.1 MGP_AJ_G0017392.1 mouse_genomes_project 10 75722159 75735643 - MGP_AJ_P0025937 Aire protein_coding protein_coding MGP_AJ_T0025938.1 MGP_AJ_G0017392.1 mouse_genomes_project 10 75722159 75735643 - MGP_AJ_P0025938 Aire protein_coding protein_coding MGP_AJ_T0025939.1 MGP_AJ_G0017392.1 mouse_genomes_project 10 75722159 75735643 - MGP_AJ_P0025939 Aire protein_coding protein_coding MGP_AJ_T0025940.1 MGP_AJ_G0017392.1 mouse_genomes_project 10 75722159 75735643 - MGP_AJ_P0025940 Aire protein_coding protein_coding MGP_AJ_T0025941.1 MGP_AJ_G0017392.1 mouse_genomes_project 10 75722159 75735643 - MGP_AJ_P0025941 Aire protein_coding protein_coding MGP_AJ_T0025942.1 MGP_AJ_G0017392.1 mouse_genomes_project 10 75722159 75735643 - MGP_AJ_P0025942 Aire protein_coding protein_coding MGP_AJ_T0025943.1 MGP_AJ_G0017392.1 mouse_genomes_project 10 75722199 75735643 - MGP_AJ_P0025943 Aire protein_coding protein_coding MGP_AJ_T0025944.1 MGP_AJ_G0017392.1 mouse_genomes_project 10 75722199 75735635 - MGP_AJ_P0025944 Aire protein_coding nonsense_mediated_decay MGP_AJ_T0025945.1 MGP_AJ_G0017392.1 mouse_genomes_project 10 75723765 75730299 - Aire protein_coding retained_intron MGP_AJ_T0025946.1 MGP_AJ_G0017392.1 mouse_genomes_project 10 75728407 75733780 - Aire protein_coding retained_intron MGP_AJ_T0024825.1 MGP_AJ_G0017082.1 mouse_genomes_project 10 24318148 24326595 - Lama2 protein_coding retained_intron MGP_AJ_T0024826.1 MGP_AJ_G0017082.1 mouse_genomes_project 10 24319397 24947129 - MGP_AJ_P0024826 Lama2 protein_coding protein_coding MGP_AJ_T0024827.1 MGP_AJ_G0017082.1 mouse_genomes_project 10 24319503 24416426 - MGP_AJ_P0024827 Lama2 protein_coding unknown_likely_coding MGP_AJ_T0024828.1 MGP_AJ_G0017082.1 mouse_genomes_project 10 24424763 24947082 - MGP_AJ_P0024828 Lama2 protein_coding unknown_likely_coding MGP_AJ_T0024829.1 MGP_AJ_G0017082.1 mouse_genomes_project 10 24529743 24947082 - MGP_AJ_P0024829 Lama2 protein_coding protein_coding MGP_AJ_T0024830.1 MGP_AJ_G0017082.1 mouse_genomes_project 10 24602596 24947228 - Lama2 protein_coding retained_intron MGP_AJ_T0024831.1 MGP_AJ_G0017082.1 mouse_genomes_project 10 24683677 24947152 - Lama2 protein_coding retained_intron MGP_AJ_T0024832.1 MGP_AJ_G0017082.1 mouse_genomes_project 10 24752160 24950044 - Lama2 protein_coding retained_intron MGP_AJ_T0024833.1 MGP_AJ_G0017082.1 mouse_genomes_project 10 24804886 24947152 - Lama2 protein_coding processed_transcript MGP_AJ_T0025201.1 MGP_AJ_G0017216.1 mouse_genomes_project 10 55340755 55454702 + MGP_AJ_P0025201 Pkib protein_coding protein_coding MGP_AJ_T0025202.1 MGP_AJ_G0017216.1 mouse_genomes_project 10 55340825 55456886 + MGP_AJ_P0025202 Pkib protein_coding protein_coding MGP_AJ_T0025203.1 MGP_AJ_G0017216.1 mouse_genomes_project 10 55340830 55422519 + Pkib protein_coding retained_intron MGP_AJ_T0025204.1 MGP_AJ_G0017216.1 mouse_genomes_project 10 55340868 55365855 + Pkib protein_coding retained_intron MGP_AJ_T0025205.1 MGP_AJ_G0017216.1 mouse_genomes_project 10 55340898 55443908 + MGP_AJ_P0025205 Pkib protein_coding protein_coding MGP_AJ_T0025206.1 MGP_AJ_G0017216.1 mouse_genomes_project 10 55349730 55429035 + Pkib protein_coding processed_transcript MGP_AJ_T0025207.1 MGP_AJ_G0017216.1 mouse_genomes_project 10 55354604 55452128 + MGP_AJ_P0025207 Pkib protein_coding protein_coding MGP_AJ_T0025208.1 MGP_AJ_G0017216.1 mouse_genomes_project 10 55354655 55452128 + MGP_AJ_P0025208 Pkib protein_coding protein_coding MGP_AJ_T0025209.1 MGP_AJ_G0017216.1 mouse_genomes_project 10 55360620 55452857 + MGP_AJ_P0025209 Pkib protein_coding protein_coding MGP_AJ_T0025210.1 MGP_AJ_G0017216.1 mouse_genomes_project 10 55360633 55452129 + MGP_AJ_P0025210 Pkib protein_coding protein_coding MGP_AJ_T0025211.1 MGP_AJ_G0017216.1 mouse_genomes_project 10 55443738 55452199 + Pkib protein_coding processed_transcript MGP_AJ_T0026950.1 MGP_AJ_G0017666.1 mouse_genomes_project 10 97606021 97609299 + MGP_AJ_P0026950 Gad1-ps protein_coding protein_coding MGP_AJ_T0026034.1 MGP_AJ_G0017433.1 mouse_genomes_project 10 77469399 77489767 + MGP_AJ_P0026034 Hcn2 protein_coding protein_coding MGP_AJ_T0026602.1 MGP_AJ_G0017570.1 mouse_genomes_project 10 82341146 82412148 - MGP_AJ_P0026602 Nuak1 protein_coding protein_coding MGP_AJ_T0026603.1 MGP_AJ_G0017570.1 mouse_genomes_project 10 82345537 82363022 - MGP_AJ_P0026603 Nuak1 protein_coding protein_coding MGP_AJ_T0026301.1 MGP_AJ_G0017492.1 mouse_genomes_project 10 78475324 78492041 - MGP_AJ_P0026301 Mob3a protein_coding protein_coding MGP_AJ_T0100515.1 MGP_AJ_G0038481.1 mouse_genomes_project 10 35678141 35678273 + Gm24889 snoRNA snoRNA MGP_AJ_T0000818.1 MGP_AJ_G0000754.1 mouse_genomes_project 10 74587505 74588183 - TEC TEC MGP_AJ_T0000827.1 MGP_AJ_G0000762.1 mouse_genomes_project 10 105522337 105523276 - TEC TEC MGP_AJ_T0026186.1 MGP_AJ_G0017465.1 mouse_genomes_project 10 77935387 77937583 + MGP_AJ_P0026186 1600002K03Rik protein_coding protein_coding MGP_AJ_T0026857.1 MGP_AJ_G0017632.1 mouse_genomes_project 10 91657810 91703451 + MGP_AJ_P0026857 Ccdc38 protein_coding protein_coding MGP_AJ_T0026858.1 MGP_AJ_G0017632.1 mouse_genomes_project 10 91667116 91672359 + Ccdc38 protein_coding retained_intron MGP_AJ_T0026859.1 MGP_AJ_G0017632.1 mouse_genomes_project 10 91671662 91672404 + Ccdc38 protein_coding retained_intron MGP_AJ_T0026860.1 MGP_AJ_G0017632.1 mouse_genomes_project 10 91671665 91702175 + Ccdc38 protein_coding processed_transcript MGP_AJ_T0026861.1 MGP_AJ_G0017632.1 mouse_genomes_project 10 91684021 91693213 + Ccdc38 protein_coding processed_transcript MGP_AJ_T0024633.1 MGP_AJ_G0017011.1 mouse_genomes_project 10 14950996 14996983 - MGP_AJ_P0024633 Heca protein_coding protein_coding MGP_AJ_T0026235.1 MGP_AJ_G0017476.1 mouse_genomes_project 10 78105831 78106807 - Adamtsl5 protein_coding processed_transcript MGP_AJ_T0026236.1 MGP_AJ_G0017476.1 mouse_genomes_project 10 78106514 78116284 - Adamtsl5 protein_coding retained_intron MGP_AJ_T0026237.1 MGP_AJ_G0017476.1 mouse_genomes_project 10 78106542 78112841 - Adamtsl5 protein_coding retained_intron MGP_AJ_T0026238.1 MGP_AJ_G0017476.1 mouse_genomes_project 10 78107562 78116284 - Adamtsl5 protein_coding retained_intron MGP_AJ_T0026239.1 MGP_AJ_G0017476.1 mouse_genomes_project 10 78107562 78116284 - MGP_AJ_P0026239 Adamtsl5 protein_coding protein_coding MGP_AJ_T0026240.1 MGP_AJ_G0017476.1 mouse_genomes_project 10 78109460 78116284 - MGP_AJ_P0026240 Adamtsl5 protein_coding protein_coding MGP_AJ_T0026241.1 MGP_AJ_G0017476.1 mouse_genomes_project 10 78109727 78111960 - Adamtsl5 protein_coding processed_transcript MGP_AJ_T0026254.1 MGP_AJ_G0017480.1 mouse_genomes_project 10 78172704 78176474 - Uqcr11 protein_coding processed_transcript MGP_AJ_T0026255.1 MGP_AJ_G0017480.1 mouse_genomes_project 10 78172704 78176538 - MGP_AJ_P0026255 Uqcr11 protein_coding protein_coding MGP_AJ_T0026256.1 MGP_AJ_G0017480.1 mouse_genomes_project 10 78172705 78176503 - Uqcr11 protein_coding processed_transcript MGP_AJ_T0027378.1 MGP_AJ_G0017806.1 mouse_genomes_project 10 126077849 126094052 + MGP_AJ_P0027378 Myo1a protein_coding protein_coding MGP_AJ_T0027379.1 MGP_AJ_G0017806.1 mouse_genomes_project 10 126077935 126104926 + MGP_AJ_P0027379 Myo1a protein_coding unknown_likely_coding MGP_AJ_T0025320.1 MGP_AJ_G0017248.1 mouse_genomes_project 10 57884515 57888338 + MGP_AJ_P0025320 Gm17455 protein_coding protein_coding MGP_AJ_T0025626.1 MGP_AJ_G0017318.1 mouse_genomes_project 10 68458798 68694813 - MGP_AJ_P0025626 Bicc1 protein_coding protein_coding MGP_AJ_T0025627.1 MGP_AJ_G0017318.1 mouse_genomes_project 10 68461065 68681973 - MGP_AJ_P0025627 Bicc1 protein_coding protein_coding MGP_AJ_T0025628.1 MGP_AJ_G0017318.1 mouse_genomes_project 10 68461065 68694803 - MGP_AJ_P0025628 Bicc1 protein_coding protein_coding MGP_AJ_T0025629.1 MGP_AJ_G0017318.1 mouse_genomes_project 10 68470030 68484015 - Bicc1 protein_coding retained_intron MGP_AJ_T0000833.1 MGP_AJ_G0000768.1 mouse_genomes_project 10 117116500 117119195 + TEC TEC MGP_AJ_T0024774.1 MGP_AJ_G0017065.1 mouse_genomes_project 10 21386168 21387209 - MGP_AJ_P0024774 Taar8c protein_coding protein_coding MGP_AJ_T0027576.1 MGP_AJ_G0017895.1 mouse_genomes_project 10 128202224 128203151 - MGP_AJ_P0027576 Olfr803 protein_coding protein_coding MGP_AJ_T0027014.1 MGP_AJ_G0017685.1 mouse_genomes_project 10 105569054 105572302 - MGP_AJ_P0027014 Myf5 protein_coding protein_coding MGP_AJ_T0024674.1 MGP_AJ_G0017024.1 mouse_genomes_project 10 16691238 16704039 + MGP_AJ_P0024674 Il22ra2 protein_coding protein_coding MGP_AJ_T0025237.1 MGP_AJ_G0017226.1 mouse_genomes_project 10 56039385 56115360 - MGP_AJ_P0025237 Edar protein_coding protein_coding MGP_AJ_T0026679.1 MGP_AJ_G0017596.1 mouse_genomes_project 10 85145954 85303162 + MGP_AJ_P0026679 1700113H08Rik protein_coding protein_coding MGP_AJ_T0026680.1 MGP_AJ_G0017596.1 mouse_genomes_project 10 85145955 85303161 + MGP_AJ_P0026680 1700113H08Rik protein_coding protein_coding MGP_AJ_T0026681.1 MGP_AJ_G0017596.1 mouse_genomes_project 10 85278729 85303160 + MGP_AJ_P0026681 1700113H08Rik protein_coding protein_coding MGP_AJ_T0025537.1 MGP_AJ_G0017306.1 mouse_genomes_project 10 65613173 65657049 - MGP_AJ_P0025537 Arid5b protein_coding unknown_likely_coding MGP_AJ_T0025538.1 MGP_AJ_G0017306.1 mouse_genomes_project 10 65616247 65797520 - MGP_AJ_P0025538 Arid5b protein_coding protein_coding MGP_AJ_T0024682.1 MGP_AJ_G0017029.1 mouse_genomes_project 10 16993972 17193706 + MGP_AJ_P0024682 Map3k5 protein_coding protein_coding MGP_AJ_T0024683.1 MGP_AJ_G0017029.1 mouse_genomes_project 10 16994026 17192622 + MGP_AJ_P0024683 Map3k5 protein_coding protein_coding MGP_AJ_T0024684.1 MGP_AJ_G0017029.1 mouse_genomes_project 10 16994721 17151436 + MGP_AJ_P0024684 Map3k5 protein_coding protein_coding MGP_AJ_T0024685.1 MGP_AJ_G0017029.1 mouse_genomes_project 10 17010553 17075982 + MGP_AJ_P0024685 Map3k5 protein_coding protein_coding MGP_AJ_T0024686.1 MGP_AJ_G0017029.1 mouse_genomes_project 10 17150802 17156702 + Map3k5 protein_coding processed_transcript MGP_AJ_T0024687.1 MGP_AJ_G0017029.1 mouse_genomes_project 10 17176205 17179090 + Map3k5 protein_coding retained_intron MGP_AJ_T0024688.1 MGP_AJ_G0017029.1 mouse_genomes_project 10 17179089 17189505 + Map3k5 protein_coding retained_intron MGP_AJ_T0024675.1 MGP_AJ_G0017025.1 mouse_genomes_project 10 16714094 16733488 + MGP_AJ_P0024675 protein_coding protein_coding MGP_AJ_T0009581.1 MGP_AJ_G0007703.1 mouse_genomes_project 10 42735621 42735701 - Gm23766 miRNA miRNA MGP_AJ_T0025356.1 MGP_AJ_G0017259.1 mouse_genomes_project 10 58998776 59000469 - MGP_AJ_P0025356 D830039M14Rik protein_coding protein_coding MGP_AJ_T0027571.1 MGP_AJ_G0017893.1 mouse_genomes_project 10 128180796 128181753 - MGP_AJ_P0027571 Olfr801 protein_coding protein_coding MGP_AJ_T0027572.1 MGP_AJ_G0017893.1 mouse_genomes_project 10 128181353 128185101 - MGP_AJ_P0027572 Olfr801 protein_coding protein_coding MGP_AJ_T0027573.1 MGP_AJ_G0017893.1 mouse_genomes_project 10 128183492 128185073 - Olfr801 protein_coding processed_transcript MGP_AJ_T0024531.1 MGP_AJ_G0016989.1 mouse_genomes_project 10 7664076 8063331 - MGP_AJ_P0024531 Grm1 protein_coding protein_coding MGP_AJ_T0024532.1 MGP_AJ_G0016989.1 mouse_genomes_project 10 7666605 8063280 - MGP_AJ_P0024532 Grm1 protein_coding protein_coding MGP_AJ_T0024533.1 MGP_AJ_G0016989.1 mouse_genomes_project 10 7666813 8061943 - MGP_AJ_P0024533 Grm1 protein_coding protein_coding MGP_AJ_T0024534.1 MGP_AJ_G0016989.1 mouse_genomes_project 10 7667460 7697812 - Grm1 protein_coding processed_transcript MGP_AJ_T0024535.1 MGP_AJ_G0016989.1 mouse_genomes_project 10 7724282 7726909 - Grm1 protein_coding processed_transcript MGP_AJ_T0024536.1 MGP_AJ_G0016989.1 mouse_genomes_project 10 8061475 8063225 - Grm1 protein_coding processed_transcript MGP_AJ_T0027125.1 MGP_AJ_G0017727.1 mouse_genomes_project 10 115240370 115241798 + MGP_AJ_P0027125 Lrrc10 protein_coding protein_coding MGP_AJ_T0024962.1 MGP_AJ_G0017132.1 mouse_genomes_project 10 37419177 37426795 - MGP_AJ_P0024962 Mfsd4b2 protein_coding protein_coding MGP_AJ_T0026911.1 MGP_AJ_G0017644.1 mouse_genomes_project 10 92808474 92913445 + MGP_AJ_P0026911 Cep83 protein_coding protein_coding MGP_AJ_T0025301.1 MGP_AJ_G0017246.1 mouse_genomes_project 10 57784151 58144546 - MGP_AJ_P0025301 Cdh23 protein_coding protein_coding MGP_AJ_T0025302.1 MGP_AJ_G0017246.1 mouse_genomes_project 10 57784151 58144546 - MGP_AJ_P0025302 Cdh23 protein_coding protein_coding MGP_AJ_T0025303.1 MGP_AJ_G0017246.1 mouse_genomes_project 10 57784153 58184550 - MGP_AJ_P0025303 Cdh23 protein_coding protein_coding MGP_AJ_T0025304.1 MGP_AJ_G0017246.1 mouse_genomes_project 10 57784153 58184550 - MGP_AJ_P0025304 Cdh23 protein_coding protein_coding MGP_AJ_T0025305.1 MGP_AJ_G0017246.1 mouse_genomes_project 10 57784153 58184550 - MGP_AJ_P0025305 Cdh23 protein_coding protein_coding MGP_AJ_T0025306.1 MGP_AJ_G0017246.1 mouse_genomes_project 10 57784688 57804958 - Cdh23 protein_coding processed_transcript MGP_AJ_T0025307.1 MGP_AJ_G0017246.1 mouse_genomes_project 10 57784688 57804958 - Cdh23 protein_coding processed_transcript MGP_AJ_T0025308.1 MGP_AJ_G0017246.1 mouse_genomes_project 10 57784713 58144546 - Cdh23 protein_coding retained_intron MGP_AJ_T0025309.1 MGP_AJ_G0017246.1 mouse_genomes_project 10 57784713 58144546 - Cdh23 protein_coding retained_intron MGP_AJ_T0025310.1 MGP_AJ_G0017246.1 mouse_genomes_project 10 57784766 57787064 - Cdh23 protein_coding retained_intron MGP_AJ_T0025317.1 MGP_AJ_G0017246.1 mouse_genomes_project 10 57860047 57871853 - Cdh23 protein_coding retained_intron MGP_AJ_T0025318.1 MGP_AJ_G0017246.1 mouse_genomes_project 10 57861369 57891235 - Cdh23 protein_coding processed_transcript MGP_AJ_T0025319.1 MGP_AJ_G0017246.1 mouse_genomes_project 10 57861463 57864786 - Cdh23 protein_coding processed_transcript MGP_AJ_T0025321.1 MGP_AJ_G0017246.1 mouse_genomes_project 10 58069273 58184550 - Cdh23 protein_coding processed_transcript MGP_AJ_T0025322.1 MGP_AJ_G0017246.1 mouse_genomes_project 10 58115703 58140246 - Cdh23 protein_coding processed_transcript MGP_AJ_T0025323.1 MGP_AJ_G0017246.1 mouse_genomes_project 10 58144478 58175319 - Cdh23 protein_coding processed_transcript MGP_AJ_T0011270.1 MGP_AJ_G0009392.1 mouse_genomes_project 10 40048861 40049185 - Gm25277 misc_RNA misc_RNA MGP_AJ_T0024615.1 MGP_AJ_G0017006.1 mouse_genomes_project 10 11664158 11722692 - MGP_AJ_P0024615 Vta1 protein_coding protein_coding MGP_AJ_T0024616.1 MGP_AJ_G0017006.1 mouse_genomes_project 10 11664758 11722632 - MGP_AJ_P0024616 Vta1 protein_coding nonsense_mediated_decay MGP_AJ_T0024617.1 MGP_AJ_G0017006.1 mouse_genomes_project 10 11665066 11681304 - Vta1 protein_coding retained_intron MGP_AJ_T0024618.1 MGP_AJ_G0017006.1 mouse_genomes_project 10 11665191 11722591 - MGP_AJ_P0024618 Vta1 protein_coding protein_coding MGP_AJ_T0024619.1 MGP_AJ_G0017006.1 mouse_genomes_project 10 11665242 11697296 - MGP_AJ_P0024619 Vta1 protein_coding nonsense_mediated_decay MGP_AJ_T0024620.1 MGP_AJ_G0017006.1 mouse_genomes_project 10 11698095 11722597 - Vta1 protein_coding processed_transcript MGP_AJ_T0099300.1 MGP_AJ_G0037266.1 mouse_genomes_project 10 115881874 115881981 - Gm25709 snRNA snRNA MGP_AJ_T0025958.1 MGP_AJ_G0017397.1 mouse_genomes_project 10 75886469 75945170 - MGP_AJ_P0025958 Trappc10 protein_coding protein_coding MGP_AJ_T0026297.1 MGP_AJ_G0017491.1 mouse_genomes_project 10 78455397 78466276 - MGP_AJ_P0026297 Mknk2 protein_coding protein_coding MGP_AJ_T0026298.1 MGP_AJ_G0017491.1 mouse_genomes_project 10 78460002 78462369 - MGP_AJ_P0026298 Mknk2 protein_coding protein_coding MGP_AJ_T0026299.1 MGP_AJ_G0017491.1 mouse_genomes_project 10 78461687 78462329 - MGP_AJ_P0026299 Mknk2 protein_coding protein_coding MGP_AJ_T0026300.1 MGP_AJ_G0017491.1 mouse_genomes_project 10 78462023 78468190 - MGP_AJ_P0026300 Mknk2 protein_coding protein_coding MGP_AJ_T0017095.1 MGP_AJ_G0015106.1 mouse_genomes_project 10 21867186 21868085 - Gm15270 processed_transcript processed_transcript MGP_AJ_T0017096.1 MGP_AJ_G0015106.1 mouse_genomes_project 10 21867192 21915021 - Gm15270 processed_transcript processed_transcript MGP_AJ_T0017097.1 MGP_AJ_G0015106.1 mouse_genomes_project 10 21899282 21912938 - Gm15270 processed_transcript processed_transcript MGP_AJ_T0017098.1 MGP_AJ_G0015106.1 mouse_genomes_project 10 21914450 21916314 - Gm15270 processed_transcript processed_transcript MGP_AJ_T0009589.1 MGP_AJ_G0007711.1 mouse_genomes_project 10 58637050 58637149 - Gm44308 miRNA miRNA MGP_AJ_T0026764.1 MGP_AJ_G0017616.1 mouse_genomes_project 10 87651803 87711507 - MGP_AJ_P0026764 Slc17a8 protein_coding protein_coding MGP_AJ_T0026765.1 MGP_AJ_G0017616.1 mouse_genomes_project 10 87653805 87693969 - MGP_AJ_P0026765 Slc17a8 protein_coding protein_coding MGP_AJ_T0099293.1 MGP_AJ_G0037259.1 mouse_genomes_project 10 102985423 102985528 - Gm25522 snRNA snRNA MGP_AJ_T0027432.1 MGP_AJ_G0017826.1 mouse_genomes_project 10 126630088 126631977 - MGP_AJ_P0027432 Spryd4 protein_coding protein_coding MGP_AJ_T0003072.1 MGP_AJ_G0002864.1 mouse_genomes_project 10 84174275 84178303 + Gm15990 antisense antisense MGP_AJ_T0027044.1 MGP_AJ_G0017695.1 mouse_genomes_project 10 109012805 109078811 - MGP_AJ_P0027044 Zdhhc17 protein_coding protein_coding MGP_AJ_T0027045.1 MGP_AJ_G0017695.1 mouse_genomes_project 10 109032573 109078748 - MGP_AJ_P0027045 Zdhhc17 protein_coding protein_coding MGP_AJ_T0025911.1 MGP_AJ_G0017389.1 mouse_genomes_project 10 75608186 75660528 - protein_coding processed_transcript MGP_AJ_T0025912.1 MGP_AJ_G0017389.1 mouse_genomes_project 10 75608324 75630759 - protein_coding retained_intron MGP_AJ_T0025913.1 MGP_AJ_G0017389.1 mouse_genomes_project 10 75608382 75631964 - protein_coding retained_intron MGP_AJ_T0025914.1 MGP_AJ_G0017389.1 mouse_genomes_project 10 75609197 75663964 - MGP_AJ_P0025914 protein_coding unknown_likely_coding MGP_AJ_T0025915.1 MGP_AJ_G0017389.1 mouse_genomes_project 10 75615079 75619792 - protein_coding retained_intron MGP_AJ_T0025916.1 MGP_AJ_G0017389.1 mouse_genomes_project 10 75616310 75636970 - protein_coding retained_intron MGP_AJ_T0025917.1 MGP_AJ_G0017389.1 mouse_genomes_project 10 75655795 75663950 - MGP_AJ_P0025917 protein_coding protein_coding MGP_AJ_T0025918.1 MGP_AJ_G0017389.1 mouse_genomes_project 10 75660115 75664709 - protein_coding processed_transcript MGP_AJ_T0026433.1 MGP_AJ_G0017533.1 mouse_genomes_project 10 79166878 79168666 - MGP_AJ_P0026433 4930404N11Rik protein_coding protein_coding MGP_AJ_T0026434.1 MGP_AJ_G0017533.1 mouse_genomes_project 10 79167734 79168688 - 4930404N11Rik protein_coding retained_intron MGP_AJ_T0026435.1 MGP_AJ_G0017533.1 mouse_genomes_project 10 79167835 79169628 - MGP_AJ_P0026435 4930404N11Rik protein_coding protein_coding MGP_AJ_T0026436.1 MGP_AJ_G0017533.1 mouse_genomes_project 10 79167858 79169602 - 4930404N11Rik protein_coding retained_intron MGP_AJ_T0027218.1 MGP_AJ_G0017758.1 mouse_genomes_project 10 119842438 119877753 - MGP_AJ_P0027218 Tbk1 protein_coding protein_coding MGP_AJ_T0100551.1 MGP_AJ_G0038517.1 mouse_genomes_project 10 114526434 114526571 + Gm26495 snoRNA snoRNA MGP_AJ_T0098382.1 MGP_AJ_G0036366.1 mouse_genomes_project 10 75507234 75507900 - pseudogene pseudogene MGP_AJ_T0025973.1 MGP_AJ_G0017402.1 mouse_genomes_project 10 76190965 76194847 - MGP_AJ_P0025973 Gm9978 protein_coding protein_coding MGP_AJ_T0026933.1 MGP_AJ_G0017656.1 mouse_genomes_project 10 95776534 95783018 + MGP_AJ_P0026933 Kera protein_coding protein_coding MGP_AJ_T0025798.1 MGP_AJ_G0017356.1 mouse_genomes_project 10 73843620 73851592 + MGP_AJ_P0025798 S100b protein_coding protein_coding MGP_AJ_T0099292.1 MGP_AJ_G0037258.1 mouse_genomes_project 10 102642564 102642721 - Gm22945 snRNA snRNA MGP_AJ_T0003038.1 MGP_AJ_G0002836.1 mouse_genomes_project 10 60116074 60117450 + 4933428P19Rik antisense antisense MGP_AJ_T0009596.1 MGP_AJ_G0007718.1 mouse_genomes_project 10 76042984 76043042 - Mir7659 miRNA miRNA MGP_AJ_T0027586.1 MGP_AJ_G0017902.1 mouse_genomes_project 10 128311108 128312114 - MGP_AJ_P0027586 Olfr810 protein_coding protein_coding MGP_AJ_T0024890.1 MGP_AJ_G0017107.1 mouse_genomes_project 10 31400975 31434014 - MGP_AJ_P0024890 Zufsp protein_coding unknown_likely_coding MGP_AJ_T0024891.1 MGP_AJ_G0017107.1 mouse_genomes_project 10 31409981 31434256 - MGP_AJ_P0024891 Zufsp protein_coding protein_coding MGP_AJ_T0003074.1 MGP_AJ_G0002866.1 mouse_genomes_project 10 84988059 84989312 + Gm16280 antisense antisense MGP_AJ_T0026903.1 MGP_AJ_G0017642.1 mouse_genomes_project 10 92405389 92410446 - MGP_AJ_P0026903 protein_coding protein_coding MGP_AJ_T0026904.1 MGP_AJ_G0017642.1 mouse_genomes_project 10 92408764 92410350 - protein_coding retained_intron MGP_AJ_T0025359.1 MGP_AJ_G0017262.1 mouse_genomes_project 10 59176989 59202590 + MGP_AJ_P0025359 Ppa1 protein_coding protein_coding MGP_AJ_T0025360.1 MGP_AJ_G0017262.1 mouse_genomes_project 10 59177058 59181256 + Ppa1 protein_coding retained_intron MGP_AJ_T0025361.1 MGP_AJ_G0017262.1 mouse_genomes_project 10 59191118 59193848 + Ppa1 protein_coding processed_transcript MGP_AJ_T0025362.1 MGP_AJ_G0017262.1 mouse_genomes_project 10 59192119 59194028 + Ppa1 protein_coding retained_intron MGP_AJ_T0027560.1 MGP_AJ_G0017884.1 mouse_genomes_project 10 127996155 127997094 + MGP_AJ_P0027560 Olfr789 protein_coding protein_coding MGP_AJ_T0024509.1 MGP_AJ_G0016982.1 mouse_genomes_project 10 5696082 5864878 - MGP_AJ_P0024509 Sash1 protein_coding protein_coding MGP_AJ_T0025425.1 MGP_AJ_G0017277.1 mouse_genomes_project 10 59991187 60023617 - MGP_AJ_P0025425 Vps26a protein_coding protein_coding MGP_AJ_T0025426.1 MGP_AJ_G0017277.1 mouse_genomes_project 10 59991187 60023824 - MGP_AJ_P0025426 Vps26a protein_coding protein_coding MGP_AJ_T0026094.1 MGP_AJ_G0017446.1 mouse_genomes_project 10 77649802 77664007 - MGP_AJ_P0026094 Med16 protein_coding protein_coding MGP_AJ_T0026095.1 MGP_AJ_G0017446.1 mouse_genomes_project 10 77650029 77663984 - MGP_AJ_P0026095 Med16 protein_coding protein_coding MGP_AJ_T0026096.1 MGP_AJ_G0017446.1 mouse_genomes_project 10 77653321 77654771 - Med16 protein_coding retained_intron MGP_AJ_T0026097.1 MGP_AJ_G0017446.1 mouse_genomes_project 10 77656923 77663904 - Med16 protein_coding retained_intron MGP_AJ_T0026098.1 MGP_AJ_G0017446.1 mouse_genomes_project 10 77658264 77663996 - MGP_AJ_P0026098 Med16 protein_coding protein_coding MGP_AJ_T0026099.1 MGP_AJ_G0017446.1 mouse_genomes_project 10 77658440 77663407 - MGP_AJ_P0026099 Med16 protein_coding protein_coding MGP_AJ_T0026100.1 MGP_AJ_G0017446.1 mouse_genomes_project 10 77658467 77664009 - MGP_AJ_P0026100 Med16 protein_coding protein_coding MGP_AJ_T0027256.1 MGP_AJ_G0017771.1 mouse_genomes_project 10 125210337 125241013 - MGP_AJ_P0027256 Xrcc6bp1 protein_coding protein_coding MGP_AJ_T0027257.1 MGP_AJ_G0017771.1 mouse_genomes_project 10 125227093 125241013 - MGP_AJ_P0027257 Xrcc6bp1 protein_coding protein_coding MGP_AJ_T0027126.1 MGP_AJ_G0017728.1 mouse_genomes_project 10 115246890 115259707 - MGP_AJ_P0027126 Cct2 protein_coding protein_coding MGP_AJ_T0027604.1 MGP_AJ_G0017917.1 mouse_genomes_project 10 128728536 128729594 - MGP_AJ_P0027604 Olfr827 protein_coding protein_coding MGP_AJ_T0027297.1 MGP_AJ_G0017786.1 mouse_genomes_project 10 125535556 125540885 - MGP_AJ_P0027297 Dtx3 protein_coding protein_coding MGP_AJ_T0027298.1 MGP_AJ_G0017786.1 mouse_genomes_project 10 125535556 125540885 - MGP_AJ_P0027298 Dtx3 protein_coding protein_coding MGP_AJ_T0027299.1 MGP_AJ_G0017786.1 mouse_genomes_project 10 125535820 125540903 - MGP_AJ_P0027299 Dtx3 protein_coding protein_coding MGP_AJ_T0027300.1 MGP_AJ_G0017786.1 mouse_genomes_project 10 125536003 125539642 - MGP_AJ_P0027300 Dtx3 protein_coding protein_coding MGP_AJ_T0027301.1 MGP_AJ_G0017786.1 mouse_genomes_project 10 125538194 125540904 - MGP_AJ_P0027301 Dtx3 protein_coding protein_coding MGP_AJ_T0027302.1 MGP_AJ_G0017786.1 mouse_genomes_project 10 125538723 125540895 - Dtx3 protein_coding retained_intron MGP_AJ_T0027165.1 MGP_AJ_G0017743.1 mouse_genomes_project 10 117115009 117124534 - MGP_AJ_P0027165 Dyrk2 protein_coding protein_coding MGP_AJ_T0003083.1 MGP_AJ_G0002873.1 mouse_genomes_project 10 108859923 108965018 - 1700020G17Rik antisense antisense MGP_AJ_T0003084.1 MGP_AJ_G0002873.1 mouse_genomes_project 10 108877094 108965048 - 1700020G17Rik antisense antisense MGP_AJ_T0003085.1 MGP_AJ_G0002873.1 mouse_genomes_project 10 108888512 108965080 - 1700020G17Rik antisense antisense MGP_AJ_T0003086.1 MGP_AJ_G0002873.1 mouse_genomes_project 10 108910591 108965067 - 1700020G17Rik antisense antisense MGP_AJ_T0027096.1 MGP_AJ_G0017719.1 mouse_genomes_project 10 114300715 114302969 - MGP_AJ_P0027096 4933416C03Rik protein_coding protein_coding MGP_AJ_T0025501.1 MGP_AJ_G0017296.1 mouse_genomes_project 10 61473456 61476025 - MGP_AJ_P0025501 Gm10118 protein_coding protein_coding MGP_AJ_T0024376.1 MGP_AJ_G0016955.1 mouse_genomes_project 10 1288190 1309878 - MGP_AJ_P0024376 Zbtb2 protein_coding protein_coding MGP_AJ_T0024377.1 MGP_AJ_G0016955.1 mouse_genomes_project 10 1288591 1309232 - MGP_AJ_P0024377 Zbtb2 protein_coding protein_coding MGP_AJ_T0025454.1 MGP_AJ_G0017285.1 mouse_genomes_project 10 60472419 60498140 + MGP_AJ_P0025454 Slc25a16 protein_coding protein_coding MGP_AJ_T0025455.1 MGP_AJ_G0017285.1 mouse_genomes_project 10 60472453 60481574 + Slc25a16 protein_coding retained_intron MGP_AJ_T0025456.1 MGP_AJ_G0017285.1 mouse_genomes_project 10 60472466 60496071 + MGP_AJ_P0025456 Slc25a16 protein_coding protein_coding MGP_AJ_T0025457.1 MGP_AJ_G0017285.1 mouse_genomes_project 10 60494083 60496076 + Slc25a16 protein_coding retained_intron MGP_AJ_T0027505.1 MGP_AJ_G0017851.1 mouse_genomes_project 10 127117654 127121686 - MGP_AJ_P0027505 Suox protein_coding protein_coding MGP_AJ_T0027580.1 MGP_AJ_G0017898.1 mouse_genomes_project 10 128254370 128258844 - MGP_AJ_P0027580 Olfr806 protein_coding protein_coding MGP_AJ_T0027581.1 MGP_AJ_G0017898.1 mouse_genomes_project 10 128254370 128255857 - MGP_AJ_P0027581 Olfr806 protein_coding protein_coding MGP_AJ_T0026144.1 MGP_AJ_G0017460.1 mouse_genomes_project 10 77877486 77894089 + MGP_AJ_P0026144 Stk11 protein_coding protein_coding MGP_AJ_T0026145.1 MGP_AJ_G0017460.1 mouse_genomes_project 10 77877496 77892163 + MGP_AJ_P0026145 Stk11 protein_coding nonsense_mediated_decay MGP_AJ_T0026146.1 MGP_AJ_G0017460.1 mouse_genomes_project 10 77877496 77892376 + MGP_AJ_P0026146 Stk11 protein_coding protein_coding MGP_AJ_T0026147.1 MGP_AJ_G0017460.1 mouse_genomes_project 10 77878040 77892164 + MGP_AJ_P0026147 Stk11 protein_coding nonsense_mediated_decay MGP_AJ_T0026148.1 MGP_AJ_G0017460.1 mouse_genomes_project 10 77878047 77879508 + Stk11 protein_coding processed_transcript MGP_AJ_T0026149.1 MGP_AJ_G0017460.1 mouse_genomes_project 10 77886512 77891669 + Stk11 protein_coding retained_intron MGP_AJ_T0026150.1 MGP_AJ_G0017460.1 mouse_genomes_project 10 77887068 77888203 + Stk11 protein_coding retained_intron MGP_AJ_T0026151.1 MGP_AJ_G0017460.1 mouse_genomes_project 10 77888079 77889893 + Stk11 protein_coding retained_intron MGP_AJ_T0026152.1 MGP_AJ_G0017460.1 mouse_genomes_project 10 77888375 77892164 + MGP_AJ_P0026152 Stk11 protein_coding protein_coding MGP_AJ_T0024751.1 MGP_AJ_G0017048.1 mouse_genomes_project 10 20116227 20119063 - MGP_AJ_P0024751 Tcf21 protein_coding protein_coding MGP_AJ_T0017128.1 MGP_AJ_G0015115.1 mouse_genomes_project 10 118636962 118657014 + 1700006J14Rik processed_transcript processed_transcript MGP_AJ_T0017129.1 MGP_AJ_G0015115.1 mouse_genomes_project 10 118636962 118655533 + 1700006J14Rik processed_transcript processed_transcript MGP_AJ_T0017130.1 MGP_AJ_G0015115.1 mouse_genomes_project 10 118636962 118653429 + 1700006J14Rik processed_transcript processed_transcript MGP_AJ_T0017131.1 MGP_AJ_G0015115.1 mouse_genomes_project 10 118636982 118656505 + 1700006J14Rik processed_transcript processed_transcript MGP_AJ_T0000820.1 MGP_AJ_G0000756.1 mouse_genomes_project 10 78281903 78282758 + TEC TEC MGP_AJ_T0025357.1 MGP_AJ_G0017260.1 mouse_genomes_project 10 58999364 59109989 + MGP_AJ_P0025357 Lrrc20 protein_coding protein_coding MGP_AJ_T0024921.1 MGP_AJ_G0017124.1 mouse_genomes_project 10 36455093 36496212 + Lama4 protein_coding retained_intron MGP_AJ_T0024922.1 MGP_AJ_G0017124.1 mouse_genomes_project 10 36455093 36605915 + MGP_AJ_P0024922 Lama4 protein_coding protein_coding MGP_AJ_T0024923.1 MGP_AJ_G0017124.1 mouse_genomes_project 10 36455131 36536852 + Lama4 protein_coding retained_intron MGP_AJ_T0024924.1 MGP_AJ_G0017124.1 mouse_genomes_project 10 36455148 36524180 + Lama4 protein_coding retained_intron MGP_AJ_T0024925.1 MGP_AJ_G0017124.1 mouse_genomes_project 10 36455250 36544124 + Lama4 protein_coding retained_intron MGP_AJ_T0024926.1 MGP_AJ_G0017124.1 mouse_genomes_project 10 36455533 36605917 + MGP_AJ_P0024926 Lama4 protein_coding unknown_likely_coding MGP_AJ_T0024927.1 MGP_AJ_G0017124.1 mouse_genomes_project 10 36543409 36547272 + Lama4 protein_coding retained_intron MGP_AJ_T0024928.1 MGP_AJ_G0017124.1 mouse_genomes_project 10 36601509 36605824 + Lama4 protein_coding retained_intron MGP_AJ_T0027609.1 MGP_AJ_G0017922.1 mouse_genomes_project 10 128954945 128964620 - MGP_AJ_P0027609 protein_coding protein_coding MGP_AJ_T0026023.1 MGP_AJ_G0017427.1 mouse_genomes_project 10 77390703 77396119 - MGP_AJ_P0026023 Odf3l2 protein_coding protein_coding MGP_AJ_T0024899.1 MGP_AJ_G0017114.1 mouse_genomes_project 10 31637963 31698610 - MGP_AJ_P0024899 Dse protein_coding protein_coding MGP_AJ_T0000816.1 MGP_AJ_G0000752.1 mouse_genomes_project 10 60655552 60655894 + TEC TEC MGP_AJ_T0024896.1 MGP_AJ_G0017111.1 mouse_genomes_project 10 31523644 31529174 - MGP_AJ_P0024896 Fam26d protein_coding protein_coding MGP_AJ_T0006155.1 MGP_AJ_G0005139.1 mouse_genomes_project 10 110888870 110947329 + 1700010J16Rik lincRNA lincRNA MGP_AJ_T0006156.1 MGP_AJ_G0005139.1 mouse_genomes_project 10 110888908 110947332 + 1700010J16Rik lincRNA lincRNA MGP_AJ_T0027463.1 MGP_AJ_G0017839.1 mouse_genomes_project 10 126827780 126836818 - MGP_AJ_P0027463 Nabp2 protein_coding protein_coding MGP_AJ_T0027464.1 MGP_AJ_G0017839.1 mouse_genomes_project 10 126827780 126836964 - MGP_AJ_P0027464 Nabp2 protein_coding protein_coding MGP_AJ_T0027465.1 MGP_AJ_G0017839.1 mouse_genomes_project 10 126827859 126836812 - MGP_AJ_P0027465 Nabp2 protein_coding protein_coding MGP_AJ_T0027466.1 MGP_AJ_G0017839.1 mouse_genomes_project 10 126827975 126835933 - Nabp2 protein_coding retained_intron MGP_AJ_T0027467.1 MGP_AJ_G0017839.1 mouse_genomes_project 10 126828285 126836722 - MGP_AJ_P0027467 Nabp2 protein_coding protein_coding MGP_AJ_T0027468.1 MGP_AJ_G0017839.1 mouse_genomes_project 10 126828295 126837641 - MGP_AJ_P0027468 Nabp2 protein_coding protein_coding MGP_AJ_T0027469.1 MGP_AJ_G0017839.1 mouse_genomes_project 10 126835252 126836270 - MGP_AJ_P0027469 Nabp2 protein_coding nonsense_mediated_decay MGP_AJ_T0027470.1 MGP_AJ_G0017839.1 mouse_genomes_project 10 126835808 126838582 - MGP_AJ_P0027470 Nabp2 protein_coding protein_coding MGP_AJ_T0027471.1 MGP_AJ_G0017839.1 mouse_genomes_project 10 126835836 126836826 - MGP_AJ_P0027471 Nabp2 protein_coding protein_coding MGP_AJ_T0012426.1 MGP_AJ_G0010521.1 mouse_genomes_project 10 69531136 69531941 - processed_pseudogene processed_pseudogene MGP_AJ_T0012416.1 MGP_AJ_G0010511.1 mouse_genomes_project 10 49824245 49824805 + processed_pseudogene processed_pseudogene MGP_AJ_T0006163.1 MGP_AJ_G0005143.1 mouse_genomes_project 10 117337878 117349027 + 1700064J06Rik lincRNA lincRNA MGP_AJ_T0025927.1 MGP_AJ_G0017391.1 mouse_genomes_project 10 75681003 75707221 - MGP_AJ_P0025927 Pfkl protein_coding protein_coding MGP_AJ_T0025928.1 MGP_AJ_G0017391.1 mouse_genomes_project 10 75684527 75686241 - Pfkl protein_coding retained_intron MGP_AJ_T0025929.1 MGP_AJ_G0017391.1 mouse_genomes_project 10 75694650 75697348 - Pfkl protein_coding retained_intron MGP_AJ_T0025930.1 MGP_AJ_G0017391.1 mouse_genomes_project 10 75698093 75707497 - Pfkl protein_coding processed_transcript MGP_AJ_T0024712.1 MGP_AJ_G0017036.1 mouse_genomes_project 10 18187722 18224746 - MGP_AJ_P0024712 Myb protein_coding protein_coding MGP_AJ_T0024713.1 MGP_AJ_G0017036.1 mouse_genomes_project 10 18188063 18224746 - MGP_AJ_P0024713 Myb protein_coding protein_coding MGP_AJ_T0024714.1 MGP_AJ_G0017036.1 mouse_genomes_project 10 18202772 18224691 - Myb protein_coding retained_intron MGP_AJ_T0026759.1 MGP_AJ_G0017614.1 mouse_genomes_project 10 87479117 87513957 - MGP_AJ_P0026759 Gas2l3 protein_coding protein_coding MGP_AJ_T0026760.1 MGP_AJ_G0017614.1 mouse_genomes_project 10 87479117 87513957 - MGP_AJ_P0026760 Gas2l3 protein_coding protein_coding MGP_AJ_T0025464.1 MGP_AJ_G0017287.1 mouse_genomes_project 10 60531694 60541893 + Rufy2 protein_coding retained_intron MGP_AJ_T0025465.1 MGP_AJ_G0017287.1 mouse_genomes_project 10 60531710 60555894 + MGP_AJ_P0025465 Rufy2 protein_coding protein_coding MGP_AJ_T0025466.1 MGP_AJ_G0017287.1 mouse_genomes_project 10 60531713 60565263 + MGP_AJ_P0025466 Rufy2 protein_coding protein_coding MGP_AJ_T0025467.1 MGP_AJ_G0017287.1 mouse_genomes_project 10 60531723 60568518 + MGP_AJ_P0025467 Rufy2 protein_coding nonsense_mediated_decay MGP_AJ_T0025468.1 MGP_AJ_G0017287.1 mouse_genomes_project 10 60531733 60555867 + MGP_AJ_P0025468 Rufy2 protein_coding protein_coding MGP_AJ_T0025469.1 MGP_AJ_G0017287.1 mouse_genomes_project 10 60531764 60553647 + MGP_AJ_P0025469 Rufy2 protein_coding nonsense_mediated_decay MGP_AJ_T0025470.1 MGP_AJ_G0017287.1 mouse_genomes_project 10 60532899 60540772 + MGP_AJ_P0025470 Rufy2 protein_coding protein_coding MGP_AJ_T0025471.1 MGP_AJ_G0017287.1 mouse_genomes_project 10 60553684 60559547 + Rufy2 protein_coding retained_intron MGP_AJ_T0006120.1 MGP_AJ_G0005120.1 mouse_genomes_project 10 82460160 82469414 + 4930463O16Rik lincRNA lincRNA MGP_AJ_T0006121.1 MGP_AJ_G0005120.1 mouse_genomes_project 10 82460601 82464594 + 4930463O16Rik lincRNA lincRNA MGP_AJ_T0026339.1 MGP_AJ_G0017509.1 mouse_genomes_project 10 78814309 78820130 - MGP_AJ_P0026339 Diras1 protein_coding protein_coding MGP_AJ_T0026340.1 MGP_AJ_G0017509.1 mouse_genomes_project 10 78816811 78820383 - MGP_AJ_P0026340 Diras1 protein_coding protein_coding MGP_AJ_T0102225.1 MGP_AJ_G0039968.1 mouse_genomes_project 10 128611119 128611871 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0012449.1 MGP_AJ_G0010544.1 mouse_genomes_project 10 120462770 120466946 + processed_pseudogene processed_pseudogene MGP_AJ_T0099305.1 MGP_AJ_G0037271.1 mouse_genomes_project 10 127402769 127402869 + Gm25494 snRNA snRNA MGP_AJ_T0025219.1 MGP_AJ_G0017221.1 mouse_genomes_project 10 55666471 55667975 - MGP_AJ_P0025219 Gm4981 protein_coding protein_coding MGP_AJ_T0026105.1 MGP_AJ_G0017450.1 mouse_genomes_project 10 77682874 77711454 + MGP_AJ_P0026105 Arid3a protein_coding protein_coding MGP_AJ_T0026106.1 MGP_AJ_G0017450.1 mouse_genomes_project 10 77682970 77711147 + MGP_AJ_P0026106 Arid3a protein_coding protein_coding MGP_AJ_T0026107.1 MGP_AJ_G0017450.1 mouse_genomes_project 10 77683172 77711139 + MGP_AJ_P0026107 Arid3a protein_coding protein_coding MGP_AJ_T0026108.1 MGP_AJ_G0017450.1 mouse_genomes_project 10 77686116 77686911 + MGP_AJ_P0026108 Arid3a protein_coding protein_coding MGP_AJ_T0026109.1 MGP_AJ_G0017450.1 mouse_genomes_project 10 77702714 77709079 + Arid3a protein_coding processed_transcript MGP_AJ_T0024745.1 MGP_AJ_G0017046.1 mouse_genomes_project 10 19961673 20018615 + MGP_AJ_P0024745 Slc2a12 protein_coding protein_coding MGP_AJ_T0024746.1 MGP_AJ_G0017046.1 mouse_genomes_project 10 19965672 19981167 + Slc2a12 protein_coding processed_transcript MGP_AJ_T0025194.1 MGP_AJ_G0017213.1 mouse_genomes_project 10 54419817 54422938 + MGP_AJ_P0025194 Gm9956 protein_coding protein_coding MGP_AJ_T0011273.1 MGP_AJ_G0009395.1 mouse_genomes_project 10 68047600 68047912 - Gm22320 misc_RNA misc_RNA MGP_AJ_T0025096.1 MGP_AJ_G0017171.1 mouse_genomes_project 10 41119564 41120204 + MGP_AJ_P0025096 protein_coding protein_coding MGP_AJ_T0027127.1 MGP_AJ_G0017729.1 mouse_genomes_project 10 115266785 115348522 - MGP_AJ_P0027127 Frs2 protein_coding protein_coding MGP_AJ_T0003033.1 MGP_AJ_G0002833.1 mouse_genomes_project 10 57259171 57260161 - Gm17059 antisense antisense MGP_AJ_T0025786.1 MGP_AJ_G0017351.1 mouse_genomes_project 10 73538985 73594591 + MGP_AJ_P0025786 Gm5134 protein_coding protein_coding MGP_AJ_T0025787.1 MGP_AJ_G0017351.1 mouse_genomes_project 10 73560725 73583354 + Gm5134 protein_coding retained_intron MGP_AJ_T0017099.1 MGP_AJ_G0015107.1 mouse_genomes_project 10 34638981 34642950 + 5930403N24Rik processed_transcript retained_intron MGP_AJ_T0017100.1 MGP_AJ_G0015107.1 mouse_genomes_project 10 34639137 34641259 + 5930403N24Rik processed_transcript processed_transcript MGP_AJ_T0017101.1 MGP_AJ_G0015107.1 mouse_genomes_project 10 34639493 34650902 + 5930403N24Rik processed_transcript lincRNA MGP_AJ_T0026588.1 MGP_AJ_G0017568.1 mouse_genomes_project 10 81561112 81611155 - MGP_AJ_P0026588 Appl2 protein_coding protein_coding MGP_AJ_T0026589.1 MGP_AJ_G0017568.1 mouse_genomes_project 10 81561476 81564210 - MGP_AJ_P0026589 Appl2 protein_coding protein_coding MGP_AJ_T0026590.1 MGP_AJ_G0017568.1 mouse_genomes_project 10 81561821 81571232 - MGP_AJ_P0026590 Appl2 protein_coding nonsense_mediated_decay MGP_AJ_T0026591.1 MGP_AJ_G0017568.1 mouse_genomes_project 10 81563846 81574105 - Appl2 protein_coding retained_intron MGP_AJ_T0026592.1 MGP_AJ_G0017568.1 mouse_genomes_project 10 81563950 81573492 - Appl2 protein_coding retained_intron MGP_AJ_T0026593.1 MGP_AJ_G0017568.1 mouse_genomes_project 10 81567278 81611087 - Appl2 protein_coding retained_intron MGP_AJ_T0026594.1 MGP_AJ_G0017568.1 mouse_genomes_project 10 81567398 81573952 - Appl2 protein_coding retained_intron MGP_AJ_T0026595.1 MGP_AJ_G0017568.1 mouse_genomes_project 10 81570830 81573326 - Appl2 protein_coding retained_intron MGP_AJ_T0026596.1 MGP_AJ_G0017568.1 mouse_genomes_project 10 81576482 81590524 - Appl2 protein_coding processed_transcript MGP_AJ_T0026597.1 MGP_AJ_G0017568.1 mouse_genomes_project 10 81579640 81611082 - MGP_AJ_P0026597 Appl2 protein_coding protein_coding MGP_AJ_T0026598.1 MGP_AJ_G0017568.1 mouse_genomes_project 10 81582934 81611020 - MGP_AJ_P0026598 Appl2 protein_coding nonsense_mediated_decay MGP_AJ_T0026599.1 MGP_AJ_G0017568.1 mouse_genomes_project 10 81583048 81599663 - Appl2 protein_coding processed_transcript MGP_AJ_T0026600.1 MGP_AJ_G0017568.1 mouse_genomes_project 10 81586867 81611092 - MGP_AJ_P0026600 Appl2 protein_coding protein_coding MGP_AJ_T0025710.1 MGP_AJ_G0017328.1 mouse_genomes_project 10 72621836 72746210 + MGP_AJ_P0025710 Bcr protein_coding protein_coding MGP_AJ_T0026404.1 MGP_AJ_G0017526.1 mouse_genomes_project 10 79076811 79094871 - MGP_AJ_P0026404 Tjp3 protein_coding protein_coding MGP_AJ_T0009600.1 MGP_AJ_G0007722.1 mouse_genomes_project 10 76233304 76233426 + Gm27541 miRNA miRNA MGP_AJ_T0025440.1 MGP_AJ_G0017280.1 mouse_genomes_project 10 60119443 60141421 - MGP_AJ_P0025440 Ddx21 protein_coding protein_coding MGP_AJ_T0006157.1 MGP_AJ_G0005140.1 mouse_genomes_project 10 114863940 114868664 + Gm26579 lincRNA lincRNA MGP_AJ_T0012407.1 MGP_AJ_G0010502.1 mouse_genomes_project 10 36919413 36919792 - processed_pseudogene processed_pseudogene MGP_AJ_T0025033.1 MGP_AJ_G0017157.1 mouse_genomes_project 10 39251377 39350098 - MGP_AJ_P0025033 Cep57l1 protein_coding protein_coding MGP_AJ_T0025034.1 MGP_AJ_G0017157.1 mouse_genomes_project 10 39251379 39350391 - MGP_AJ_P0025034 Cep57l1 protein_coding protein_coding MGP_AJ_T0025035.1 MGP_AJ_G0017157.1 mouse_genomes_project 10 39251382 39350092 - MGP_AJ_P0025035 Cep57l1 protein_coding protein_coding MGP_AJ_T0025036.1 MGP_AJ_G0017157.1 mouse_genomes_project 10 39251382 39350092 - MGP_AJ_P0025036 Cep57l1 protein_coding protein_coding MGP_AJ_T0025037.1 MGP_AJ_G0017157.1 mouse_genomes_project 10 39252383 39350107 - MGP_AJ_P0025037 Cep57l1 protein_coding protein_coding MGP_AJ_T0025038.1 MGP_AJ_G0017157.1 mouse_genomes_project 10 39253709 39255448 - MGP_AJ_P0025038 Cep57l1 protein_coding protein_coding MGP_AJ_T0025039.1 MGP_AJ_G0017157.1 mouse_genomes_project 10 39258099 39261485 - Cep57l1 protein_coding retained_intron MGP_AJ_T0025040.1 MGP_AJ_G0017157.1 mouse_genomes_project 10 39261060 39280492 - Cep57l1 protein_coding retained_intron MGP_AJ_T0025041.1 MGP_AJ_G0017157.1 mouse_genomes_project 10 39276555 39350097 - Cep57l1 protein_coding retained_intron MGP_AJ_T0025042.1 MGP_AJ_G0017157.1 mouse_genomes_project 10 39278593 39350115 - Cep57l1 protein_coding retained_intron MGP_AJ_T0025976.1 MGP_AJ_G0017405.1 mouse_genomes_project 10 76322428 76328752 - MGP_AJ_P0025976 Olfr1357 protein_coding protein_coding MGP_AJ_T0025977.1 MGP_AJ_G0017405.1 mouse_genomes_project 10 76322428 76323440 - MGP_AJ_P0025977 Olfr1357 protein_coding protein_coding MGP_AJ_T0025978.1 MGP_AJ_G0017405.1 mouse_genomes_project 10 76322692 76328752 - MGP_AJ_P0025978 Olfr1357 protein_coding protein_coding MGP_AJ_T0025759.1 MGP_AJ_G0017341.1 mouse_genomes_project 10 73353240 73360533 - MGP_AJ_P0025759 Gstt3 protein_coding protein_coding MGP_AJ_T0025760.1 MGP_AJ_G0017341.1 mouse_genomes_project 10 73353925 73356386 - Gstt3 protein_coding processed_transcript MGP_AJ_T0025761.1 MGP_AJ_G0017341.1 mouse_genomes_project 10 73354045 73360137 - MGP_AJ_P0025761 Gstt3 protein_coding protein_coding MGP_AJ_T0025762.1 MGP_AJ_G0017341.1 mouse_genomes_project 10 73354525 73355990 - MGP_AJ_P0025762 Gstt3 protein_coding protein_coding MGP_AJ_T0025763.1 MGP_AJ_G0017341.1 mouse_genomes_project 10 73355879 73360169 - MGP_AJ_P0025763 Gstt3 protein_coding nonsense_mediated_decay MGP_AJ_T0026695.1 MGP_AJ_G0017600.1 mouse_genomes_project 10 86159059 86160363 + MGP_AJ_P0026695 Pmch protein_coding protein_coding MGP_AJ_T0027124.1 MGP_AJ_G0017726.1 mouse_genomes_project 10 115181629 115220176 + MGP_AJ_P0027124 Best3 protein_coding protein_coding MGP_AJ_T0006152.1 MGP_AJ_G0005136.1 mouse_genomes_project 10 104539478 104543303 - C230021G24Rik lincRNA lincRNA MGP_AJ_T0024599.1 MGP_AJ_G0017002.1 mouse_genomes_project 10 10557040 10567522 + MGP_AJ_P0024599 Adat2 protein_coding protein_coding MGP_AJ_T0099281.1 MGP_AJ_G0037247.1 mouse_genomes_project 10 82780586 82780683 - Gm24226 snRNA snRNA MGP_AJ_T0024667.1 MGP_AJ_G0017022.1 mouse_genomes_project 10 16426736 16428801 + MGP_AJ_P0024667 Olig3 protein_coding protein_coding MGP_AJ_T0027276.1 MGP_AJ_G0017777.1 mouse_genomes_project 10 125392226 125396946 + MGP_AJ_P0027276 Cyp27b1 protein_coding protein_coding MGP_AJ_T0027277.1 MGP_AJ_G0017777.1 mouse_genomes_project 10 125392226 125396983 + MGP_AJ_P0027277 Cyp27b1 protein_coding nonsense_mediated_decay MGP_AJ_T0027278.1 MGP_AJ_G0017777.1 mouse_genomes_project 10 125392647 125393843 + Cyp27b1 protein_coding processed_transcript MGP_AJ_T0024845.1 MGP_AJ_G0017085.1 mouse_genomes_project 10 26303568 26316799 - MGP_AJ_P0024845 2310057J18Rik protein_coding protein_coding MGP_AJ_T0024846.1 MGP_AJ_G0017085.1 mouse_genomes_project 10 26303644 26317708 - MGP_AJ_P0024846 2310057J18Rik protein_coding protein_coding MGP_AJ_T0024847.1 MGP_AJ_G0017085.1 mouse_genomes_project 10 26303646 26305470 - 2310057J18Rik protein_coding retained_intron MGP_AJ_T0024848.1 MGP_AJ_G0017085.1 mouse_genomes_project 10 26303646 26317718 - MGP_AJ_P0024848 2310057J18Rik protein_coding protein_coding MGP_AJ_T0026917.1 MGP_AJ_G0017647.1 mouse_genomes_project 10 93528010 93533399 - protein_coding retained_intron MGP_AJ_T0026918.1 MGP_AJ_G0017647.1 mouse_genomes_project 10 93528736 93554848 - protein_coding processed_transcript MGP_AJ_T0026919.1 MGP_AJ_G0017647.1 mouse_genomes_project 10 93541933 93555108 - protein_coding processed_transcript MGP_AJ_T0026920.1 MGP_AJ_G0017647.1 mouse_genomes_project 10 93554645 93558876 - protein_coding processed_transcript MGP_AJ_T0026921.1 MGP_AJ_G0017647.1 mouse_genomes_project 10 93555175 93558420 - MGP_AJ_P0026921 protein_coding protein_coding MGP_AJ_T0026922.1 MGP_AJ_G0017647.1 mouse_genomes_project 10 93557298 93558207 - protein_coding processed_transcript MGP_AJ_T0003051.1 MGP_AJ_G0002848.1 mouse_genomes_project 10 74140283 74156638 - 4930483K19Rik antisense antisense MGP_AJ_T0024523.1 MGP_AJ_G0016986.1 mouse_genomes_project 10 7319663 7456169 - MGP_AJ_P0024523 protein_coding protein_coding MGP_AJ_T0024524.1 MGP_AJ_G0016986.1 mouse_genomes_project 10 7319669 7399852 - MGP_AJ_P0024524 protein_coding nonsense_mediated_decay MGP_AJ_T0024525.1 MGP_AJ_G0016986.1 mouse_genomes_project 10 7319669 7456181 - MGP_AJ_P0024525 protein_coding protein_coding MGP_AJ_T0024526.1 MGP_AJ_G0016986.1 mouse_genomes_project 10 7319898 7456169 - MGP_AJ_P0024526 protein_coding unknown_likely_coding MGP_AJ_T0024527.1 MGP_AJ_G0016986.1 mouse_genomes_project 10 7383716 7413221 - MGP_AJ_P0024527 protein_coding protein_coding MGP_AJ_T0024528.1 MGP_AJ_G0016986.1 mouse_genomes_project 10 7384374 7456181 - MGP_AJ_P0024528 protein_coding protein_coding MGP_AJ_T0026610.1 MGP_AJ_G0017574.1 mouse_genomes_project 10 82725744 82879345 + MGP_AJ_P0026610 Rfx4 protein_coding protein_coding MGP_AJ_T0026611.1 MGP_AJ_G0017574.1 mouse_genomes_project 10 82726153 82879744 + MGP_AJ_P0026611 Rfx4 protein_coding protein_coding MGP_AJ_T0026612.1 MGP_AJ_G0017574.1 mouse_genomes_project 10 82731899 82785504 + Rfx4 protein_coding processed_transcript MGP_AJ_T0026613.1 MGP_AJ_G0017574.1 mouse_genomes_project 10 82731899 82785504 + Rfx4 protein_coding processed_transcript MGP_AJ_T0026614.1 MGP_AJ_G0017574.1 mouse_genomes_project 10 82810273 82845208 + Rfx4 protein_coding processed_transcript MGP_AJ_T0026615.1 MGP_AJ_G0017574.1 mouse_genomes_project 10 82810273 82879739 + MGP_AJ_P0026615 Rfx4 protein_coding protein_coding MGP_AJ_T0025340.1 MGP_AJ_G0017253.1 mouse_genomes_project 10 58684626 58701896 + MGP_AJ_P0025340 Tbata protein_coding protein_coding MGP_AJ_T0025341.1 MGP_AJ_G0017253.1 mouse_genomes_project 10 58684636 58693048 + MGP_AJ_P0025341 Tbata protein_coding protein_coding MGP_AJ_T0025342.1 MGP_AJ_G0017253.1 mouse_genomes_project 10 58684658 58701901 + MGP_AJ_P0025342 Tbata protein_coding protein_coding MGP_AJ_T0025343.1 MGP_AJ_G0017253.1 mouse_genomes_project 10 58687042 58696124 + MGP_AJ_P0025343 Tbata protein_coding nonsense_mediated_decay MGP_AJ_T0025344.1 MGP_AJ_G0017253.1 mouse_genomes_project 10 58687934 58693045 + Tbata protein_coding processed_transcript MGP_AJ_T0025345.1 MGP_AJ_G0017253.1 mouse_genomes_project 10 58687934 58693045 + Tbata protein_coding processed_transcript MGP_AJ_T0025346.1 MGP_AJ_G0017253.1 mouse_genomes_project 10 58687934 58693045 + Tbata protein_coding processed_transcript MGP_AJ_T0025347.1 MGP_AJ_G0017253.1 mouse_genomes_project 10 58687934 58693044 + MGP_AJ_P0025347 Tbata protein_coding protein_coding MGP_AJ_T0025348.1 MGP_AJ_G0017253.1 mouse_genomes_project 10 58688051 58693045 + Tbata protein_coding processed_transcript MGP_AJ_T0025349.1 MGP_AJ_G0017253.1 mouse_genomes_project 10 58688600 58701899 + MGP_AJ_P0025349 Tbata protein_coding nonsense_mediated_decay MGP_AJ_T0025424.1 MGP_AJ_G0017276.1 mouse_genomes_project 10 59985829 59987663 + MGP_AJ_P0025424 4930507D05Rik protein_coding protein_coding MGP_AJ_T0024860.1 MGP_AJ_G0017092.1 mouse_genomes_project 10 27558204 27562789 - MGP_AJ_P0024860 Cenpw protein_coding protein_coding MGP_AJ_T0027562.1 MGP_AJ_G0017886.1 mouse_genomes_project 10 128010619 128011588 + MGP_AJ_P0027562 Olfr790 protein_coding protein_coding MGP_AJ_T0012443.1 MGP_AJ_G0010538.1 mouse_genomes_project 10 103610731 103611655 - processed_pseudogene processed_pseudogene MGP_AJ_T0100517.1 MGP_AJ_G0038483.1 mouse_genomes_project 10 37611694 37611823 + Gm25613 snoRNA snoRNA MGP_AJ_T0024862.1 MGP_AJ_G0017094.1 mouse_genomes_project 10 27974457 27984767 - MGP_AJ_P0024862 Hint3 protein_coding protein_coding MGP_AJ_T0024863.1 MGP_AJ_G0017094.1 mouse_genomes_project 10 27974665 27984621 - MGP_AJ_P0024863 Hint3 protein_coding nonsense_mediated_decay MGP_AJ_T0024864.1 MGP_AJ_G0017094.1 mouse_genomes_project 10 27974699 27984625 - MGP_AJ_P0024864 Hint3 protein_coding protein_coding MGP_AJ_T0009579.1 MGP_AJ_G0007701.1 mouse_genomes_project 10 41988360 41988453 + Mir1929 miRNA miRNA MGP_AJ_T0003089.1 MGP_AJ_G0002876.1 mouse_genomes_project 10 114608012 114611198 + Kcnmb4os1 antisense antisense MGP_AJ_T0027364.1 MGP_AJ_G0017803.1 mouse_genomes_project 10 126013803 126031952 + MGP_AJ_P0027364 Stat6 protein_coding protein_coding MGP_AJ_T0027365.1 MGP_AJ_G0017803.1 mouse_genomes_project 10 126013819 126021618 + MGP_AJ_P0027365 Stat6 protein_coding protein_coding MGP_AJ_T0027366.1 MGP_AJ_G0017803.1 mouse_genomes_project 10 126023929 126026093 + Stat6 protein_coding retained_intron MGP_AJ_T0027367.1 MGP_AJ_G0017803.1 mouse_genomes_project 10 126027824 126029053 + Stat6 protein_coding retained_intron MGP_AJ_T0027368.1 MGP_AJ_G0017803.1 mouse_genomes_project 10 126030394 126031182 + Stat6 protein_coding retained_intron MGP_AJ_T0025697.1 MGP_AJ_G0017326.1 mouse_genomes_project 10 72525289 72576384 + MGP_AJ_P0025697 Gnaz protein_coding protein_coding MGP_AJ_T0025698.1 MGP_AJ_G0017326.1 mouse_genomes_project 10 72525321 72550688 + Gnaz protein_coding processed_transcript MGP_AJ_T0025699.1 MGP_AJ_G0017326.1 mouse_genomes_project 10 72549484 72576373 + MGP_AJ_P0025699 Gnaz protein_coding protein_coding MGP_AJ_T0027099.1 MGP_AJ_G0017720.1 mouse_genomes_project 10 114488764 114578770 + MGP_AJ_P0027099 Ptprb protein_coding protein_coding MGP_AJ_T0024465.1 MGP_AJ_G0016972.1 mouse_genomes_project 10 4567674 4586302 + MGP_AJ_P0024465 Lrp11 protein_coding protein_coding MGP_AJ_T0024466.1 MGP_AJ_G0016972.1 mouse_genomes_project 10 4567691 4603436 + MGP_AJ_P0024466 Lrp11 protein_coding protein_coding MGP_AJ_T0024467.1 MGP_AJ_G0016972.1 mouse_genomes_project 10 4567853 4603436 + MGP_AJ_P0024467 Lrp11 protein_coding protein_coding MGP_AJ_T0024468.1 MGP_AJ_G0016972.1 mouse_genomes_project 10 4568001 4601975 + MGP_AJ_P0024468 Lrp11 protein_coding protein_coding MGP_AJ_T0024469.1 MGP_AJ_G0016972.1 mouse_genomes_project 10 4574039 4601705 + MGP_AJ_P0024469 Lrp11 protein_coding protein_coding MGP_AJ_T0026405.1 MGP_AJ_G0017527.1 mouse_genomes_project 10 79096566 79123597 + MGP_AJ_P0026405 Pip5k1c protein_coding protein_coding MGP_AJ_T0026406.1 MGP_AJ_G0017527.1 mouse_genomes_project 10 79096583 79121879 + MGP_AJ_P0026406 Pip5k1c protein_coding protein_coding MGP_AJ_T0026407.1 MGP_AJ_G0017527.1 mouse_genomes_project 10 79096591 79112755 + MGP_AJ_P0026407 Pip5k1c protein_coding nonsense_mediated_decay MGP_AJ_T0026408.1 MGP_AJ_G0017527.1 mouse_genomes_project 10 79096607 79123597 + MGP_AJ_P0026408 Pip5k1c protein_coding nonsense_mediated_decay MGP_AJ_T0026409.1 MGP_AJ_G0017527.1 mouse_genomes_project 10 79096608 79123598 + MGP_AJ_P0026409 Pip5k1c protein_coding protein_coding MGP_AJ_T0026410.1 MGP_AJ_G0017527.1 mouse_genomes_project 10 79114312 79117065 + MGP_AJ_P0026410 Pip5k1c protein_coding protein_coding MGP_AJ_T0026411.1 MGP_AJ_G0017527.1 mouse_genomes_project 10 79116987 79121770 + MGP_AJ_P0026411 Pip5k1c protein_coding nonsense_mediated_decay MGP_AJ_T0026412.1 MGP_AJ_G0017527.1 mouse_genomes_project 10 79117122 79121645 + MGP_AJ_P0026412 Pip5k1c protein_coding nonsense_mediated_decay MGP_AJ_T0026413.1 MGP_AJ_G0017527.1 mouse_genomes_project 10 79117612 79119407 + Pip5k1c protein_coding retained_intron MGP_AJ_T0026414.1 MGP_AJ_G0017527.1 mouse_genomes_project 10 79120466 79121638 + Pip5k1c protein_coding retained_intron MGP_AJ_T0012382.1 MGP_AJ_G0010477.1 mouse_genomes_project 10 862402 863418 - processed_pseudogene processed_pseudogene MGP_AJ_T0026341.1 MGP_AJ_G0017510.1 mouse_genomes_project 10 78823257 78832130 - MGP_AJ_P0026341 Slc39a3 protein_coding protein_coding MGP_AJ_T0026342.1 MGP_AJ_G0017510.1 mouse_genomes_project 10 78823259 78832012 - MGP_AJ_P0026342 Slc39a3 protein_coding protein_coding MGP_AJ_T0026343.1 MGP_AJ_G0017510.1 mouse_genomes_project 10 78823260 78828616 - MGP_AJ_P0026343 Slc39a3 protein_coding protein_coding MGP_AJ_T0026344.1 MGP_AJ_G0017510.1 mouse_genomes_project 10 78828560 78831986 - Slc39a3 protein_coding processed_transcript MGP_AJ_T0026345.1 MGP_AJ_G0017510.1 mouse_genomes_project 10 78828586 78831954 - Slc39a3 protein_coding processed_transcript MGP_AJ_T0025229.1 MGP_AJ_G0017223.1 mouse_genomes_project 10 55759613 55862325 + MGP_AJ_P0025229 Lims1 protein_coding protein_coding MGP_AJ_T0025230.1 MGP_AJ_G0017223.1 mouse_genomes_project 10 55831943 55859417 + MGP_AJ_P0025230 Lims1 protein_coding protein_coding MGP_AJ_T0025231.1 MGP_AJ_G0017223.1 mouse_genomes_project 10 55831958 55859212 + MGP_AJ_P0025231 Lims1 protein_coding protein_coding MGP_AJ_T0025232.1 MGP_AJ_G0017223.1 mouse_genomes_project 10 55845762 55848042 + Lims1 protein_coding processed_transcript MGP_AJ_T0025233.1 MGP_AJ_G0017223.1 mouse_genomes_project 10 55854282 55859298 + Lims1 protein_coding processed_transcript MGP_AJ_T0027519.1 MGP_AJ_G0017860.1 mouse_genomes_project 10 127273614 127278396 - MGP_AJ_P0027519 Ormdl2 protein_coding protein_coding MGP_AJ_T0026540.1 MGP_AJ_G0017554.1 mouse_genomes_project 10 80248784 80253737 + MGP_AJ_P0026540 Gm4924 protein_coding protein_coding MGP_AJ_T0099259.1 MGP_AJ_G0037225.1 mouse_genomes_project 10 42367649 42367764 + Gm22503 snRNA snRNA MGP_AJ_T0027458.1 MGP_AJ_G0017837.1 mouse_genomes_project 10 126803008 126811880 + Ankrd52 protein_coding retained_intron MGP_AJ_T0027459.1 MGP_AJ_G0017837.1 mouse_genomes_project 10 126803012 126820388 + MGP_AJ_P0027459 Ankrd52 protein_coding protein_coding MGP_AJ_T0027460.1 MGP_AJ_G0017837.1 mouse_genomes_project 10 126815668 126835794 + MGP_AJ_P0027460 Ankrd52 protein_coding protein_coding MGP_AJ_T0024580.1 MGP_AJ_G0016997.1 mouse_genomes_project 10 10150694 10178694 - MGP_AJ_P0024580 Zc2hc1b protein_coding protein_coding MGP_AJ_T0026866.1 MGP_AJ_G0017636.1 mouse_genomes_project 10 91943261 91960965 + MGP_AJ_P0026866 Usp44 protein_coding protein_coding MGP_AJ_T0027601.1 MGP_AJ_G0017914.1 mouse_genomes_project 10 128633527 128634654 - MGP_AJ_P0027601 Olfr824 protein_coding protein_coding MGP_AJ_T0025350.1 MGP_AJ_G0017254.1 mouse_genomes_project 10 58711009 58787842 - MGP_AJ_P0025350 Adamts14 protein_coding protein_coding MGP_AJ_T0025351.1 MGP_AJ_G0017254.1 mouse_genomes_project 10 58712365 58787646 - MGP_AJ_P0025351 Adamts14 protein_coding protein_coding MGP_AJ_T0025254.1 MGP_AJ_G0017235.1 mouse_genomes_project 10 56902881 57073308 - MGP_AJ_P0025254 Mcu protein_coding protein_coding MGP_AJ_T0025255.1 MGP_AJ_G0017235.1 mouse_genomes_project 10 56904470 56914036 - MGP_AJ_P0025255 Mcu protein_coding protein_coding MGP_AJ_T0025256.1 MGP_AJ_G0017235.1 mouse_genomes_project 10 56989357 57073291 - MGP_AJ_P0025256 Mcu protein_coding nonsense_mediated_decay MGP_AJ_T0025257.1 MGP_AJ_G0017235.1 mouse_genomes_project 10 57058765 57073295 - Mcu protein_coding processed_transcript MGP_AJ_T0025258.1 MGP_AJ_G0017235.1 mouse_genomes_project 10 57059529 57073271 - Mcu protein_coding processed_transcript MGP_AJ_T0026542.1 MGP_AJ_G0017556.1 mouse_genomes_project 10 80551973 80555328 - MGP_AJ_P0026542 protein_coding protein_coding MGP_AJ_T0026543.1 MGP_AJ_G0017556.1 mouse_genomes_project 10 80551973 80555058 - MGP_AJ_P0026543 protein_coding protein_coding MGP_AJ_T0026544.1 MGP_AJ_G0017556.1 mouse_genomes_project 10 80552064 80555342 - MGP_AJ_P0026544 protein_coding protein_coding MGP_AJ_T0026545.1 MGP_AJ_G0017556.1 mouse_genomes_project 10 80552162 80555322 - MGP_AJ_P0026545 protein_coding protein_coding MGP_AJ_T0006091.1 MGP_AJ_G0005097.1 mouse_genomes_project 10 37397202 37406890 + 4930547M16Rik lincRNA lincRNA MGP_AJ_T0100513.1 MGP_AJ_G0038479.1 mouse_genomes_project 10 32590896 32591030 + Gm26341 snoRNA snoRNA MGP_AJ_T0027608.1 MGP_AJ_G0017921.1 mouse_genomes_project 10 128895600 128938695 - MGP_AJ_P0027608 protein_coding protein_coding MGP_AJ_T0027388.1 MGP_AJ_G0017813.1 mouse_genomes_project 10 126180974 126193942 + MGP_AJ_P0027388 protein_coding protein_coding MGP_AJ_T0024889.1 MGP_AJ_G0017106.1 mouse_genomes_project 10 31387006 31396412 + MGP_AJ_P0024889 Rsph4a protein_coding protein_coding MGP_AJ_T0027077.1 MGP_AJ_G0017713.1 mouse_genomes_project 10 113542265 113557049 - MGP_AJ_P0027077 Thap2 protein_coding protein_coding MGP_AJ_T0100536.1 MGP_AJ_G0038502.1 mouse_genomes_project 10 78976886 78976950 + Snord37 snoRNA snoRNA MGP_AJ_T0024718.1 MGP_AJ_G0017038.1 mouse_genomes_project 10 18371690 18374003 + MGP_AJ_P0024718 protein_coding protein_coding MGP_AJ_T0003096.1 MGP_AJ_G0002879.1 mouse_genomes_project 10 117698456 117699403 - Gm16321 antisense antisense MGP_AJ_T0027547.1 MGP_AJ_G0017874.1 mouse_genomes_project 10 127719058 127719994 - MGP_AJ_P0027547 protein_coding protein_coding MGP_AJ_T0099269.1 MGP_AJ_G0037235.1 mouse_genomes_project 10 55785523 55785630 - Gm23058 snRNA snRNA MGP_AJ_T0024834.1 MGP_AJ_G0017083.1 mouse_genomes_project 10 25396515 25925219 + MGP_AJ_P0024834 Ptprk protein_coding protein_coding MGP_AJ_T0024835.1 MGP_AJ_G0017083.1 mouse_genomes_project 10 25396776 25892564 + MGP_AJ_P0024835 Ptprk protein_coding unknown_likely_coding MGP_AJ_T0024836.1 MGP_AJ_G0017083.1 mouse_genomes_project 10 25788928 25892564 + MGP_AJ_P0024836 Ptprk protein_coding unknown_likely_coding MGP_AJ_T0024837.1 MGP_AJ_G0017083.1 mouse_genomes_project 10 25894172 25925148 + MGP_AJ_P0024837 Ptprk protein_coding unknown_likely_coding MGP_AJ_T0025108.1 MGP_AJ_G0017177.1 mouse_genomes_project 10 41551525 41606825 - MGP_AJ_P0025108 Aim1 protein_coding protein_coding MGP_AJ_T0025109.1 MGP_AJ_G0017177.1 mouse_genomes_project 10 41551854 41756600 - MGP_AJ_P0025109 Aim1 protein_coding protein_coding MGP_AJ_T0025365.1 MGP_AJ_G0017265.1 mouse_genomes_project 10 59244519 59267769 + MGP_AJ_P0025365 Aifm2 protein_coding protein_coding MGP_AJ_T0025366.1 MGP_AJ_G0017265.1 mouse_genomes_project 10 59244543 59257037 + Aifm2 protein_coding retained_intron MGP_AJ_T0025367.1 MGP_AJ_G0017265.1 mouse_genomes_project 10 59244567 59268376 + MGP_AJ_P0025367 Aifm2 protein_coding protein_coding MGP_AJ_T0025368.1 MGP_AJ_G0017265.1 mouse_genomes_project 10 59244579 59267763 + MGP_AJ_P0025368 Aifm2 protein_coding protein_coding MGP_AJ_T0025369.1 MGP_AJ_G0017265.1 mouse_genomes_project 10 59244588 59245492 + Aifm2 protein_coding processed_transcript MGP_AJ_T0025370.1 MGP_AJ_G0017265.1 mouse_genomes_project 10 59249557 59267769 + MGP_AJ_P0025370 Aifm2 protein_coding protein_coding MGP_AJ_T0025371.1 MGP_AJ_G0017265.1 mouse_genomes_project 10 59257263 59263686 + Aifm2 protein_coding retained_intron MGP_AJ_T0026635.1 MGP_AJ_G0017583.1 mouse_genomes_project 10 83935690 83951405 - MGP_AJ_P0026635 Prdm4 protein_coding unknown_likely_coding MGP_AJ_T0026636.1 MGP_AJ_G0017583.1 mouse_genomes_project 10 83935690 83961031 - MGP_AJ_P0026636 Prdm4 protein_coding unknown_likely_coding MGP_AJ_T0026637.1 MGP_AJ_G0017583.1 mouse_genomes_project 10 83935690 83961044 - MGP_AJ_P0026637 Prdm4 protein_coding unknown_likely_coding MGP_AJ_T0026638.1 MGP_AJ_G0017583.1 mouse_genomes_project 10 83935690 83961032 - MGP_AJ_P0026638 Prdm4 protein_coding unknown_likely_coding MGP_AJ_T0026639.1 MGP_AJ_G0017583.1 mouse_genomes_project 10 83935699 83961141 - MGP_AJ_P0026639 Prdm4 protein_coding protein_coding MGP_AJ_T0027146.1 MGP_AJ_G0017737.1 mouse_genomes_project 10 115909003 115931632 - MGP_AJ_P0027146 Mdm2 protein_coding protein_coding MGP_AJ_T0027147.1 MGP_AJ_G0017737.1 mouse_genomes_project 10 115909003 115931632 - MGP_AJ_P0027147 Mdm2 protein_coding protein_coding MGP_AJ_T0027148.1 MGP_AJ_G0017737.1 mouse_genomes_project 10 115909010 115930896 - MGP_AJ_P0027148 Mdm2 protein_coding nonsense_mediated_decay MGP_AJ_T0027149.1 MGP_AJ_G0017737.1 mouse_genomes_project 10 115910210 115931559 - Mdm2 protein_coding retained_intron MGP_AJ_T0027150.1 MGP_AJ_G0017737.1 mouse_genomes_project 10 115910344 115911622 - Mdm2 protein_coding retained_intron MGP_AJ_T0027151.1 MGP_AJ_G0017737.1 mouse_genomes_project 10 115915717 115930952 - Mdm2 protein_coding processed_transcript MGP_AJ_T0027152.1 MGP_AJ_G0017737.1 mouse_genomes_project 10 115916864 115931585 - Mdm2 protein_coding processed_transcript MGP_AJ_T0027153.1 MGP_AJ_G0017737.1 mouse_genomes_project 10 115923066 115931166 - Mdm2 protein_coding processed_transcript MGP_AJ_T0027154.1 MGP_AJ_G0017737.1 mouse_genomes_project 10 115930591 115931588 - Mdm2 protein_coding retained_intron MGP_AJ_T0026863.1 MGP_AJ_G0017634.1 mouse_genomes_project 10 91708507 91721973 + MGP_AJ_P0026863 4933408J17Rik protein_coding protein_coding MGP_AJ_T0027132.1 MGP_AJ_G0017733.1 mouse_genomes_project 10 115481561 115487121 - MGP_AJ_P0027132 protein_coding protein_coding MGP_AJ_T0024581.1 MGP_AJ_G0016998.1 mouse_genomes_project 10 10179342 10193839 - MGP_AJ_P0024581 Ltv1 protein_coding protein_coding MGP_AJ_T0025043.1 MGP_AJ_G0017158.1 mouse_genomes_project 10 39351058 39439966 + MGP_AJ_P0025043 Sesn1 protein_coding protein_coding MGP_AJ_T0025044.1 MGP_AJ_G0017158.1 mouse_genomes_project 10 39418213 39439966 + MGP_AJ_P0025044 Sesn1 protein_coding protein_coding MGP_AJ_T0025217.1 MGP_AJ_G0017219.1 mouse_genomes_project 10 55655255 55656822 - MGP_AJ_P0025217 protein_coding protein_coding MGP_AJ_T0012386.1 MGP_AJ_G0010481.1 mouse_genomes_project 10 4788417 4789060 - processed_pseudogene processed_pseudogene MGP_AJ_T0025329.1 MGP_AJ_G0017251.1 mouse_genomes_project 10 58599160 58604146 + MGP_AJ_P0025329 Pcbd1 protein_coding protein_coding MGP_AJ_T0027610.1 MGP_AJ_G0017923.1 mouse_genomes_project 10 128991022 129009247 - MGP_AJ_P0027610 protein_coding protein_coding MGP_AJ_T0003088.1 MGP_AJ_G0002875.1 mouse_genomes_project 10 112969874 112985349 + Gm15723 antisense antisense MGP_AJ_T0026745.1 MGP_AJ_G0017611.1 mouse_genomes_project 10 86816934 86896561 - MGP_AJ_P0026745 Utp20 protein_coding protein_coding MGP_AJ_T0000828.1 MGP_AJ_G0000763.1 mouse_genomes_project 10 108123005 108123297 - TEC TEC MGP_AJ_T0024915.1 MGP_AJ_G0017121.1 mouse_genomes_project 10 34476013 34503776 + MGP_AJ_P0024915 Hdac2 protein_coding protein_coding MGP_AJ_T0024916.1 MGP_AJ_G0017121.1 mouse_genomes_project 10 34476039 34497531 + MGP_AJ_P0024916 Hdac2 protein_coding protein_coding MGP_AJ_T0024917.1 MGP_AJ_G0017121.1 mouse_genomes_project 10 34493193 34503775 + Hdac2 protein_coding processed_transcript MGP_AJ_T0024918.1 MGP_AJ_G0017121.1 mouse_genomes_project 10 34500058 34503498 + Hdac2 protein_coding retained_intron MGP_AJ_T0025904.1 MGP_AJ_G0017384.1 mouse_genomes_project 10 75473577 75480365 - MGP_AJ_P0025904 protein_coding protein_coding MGP_AJ_T0000836.1 MGP_AJ_G0000771.1 mouse_genomes_project 10 119013767 119015047 + TEC TEC MGP_AJ_T0000830.1 MGP_AJ_G0000765.1 mouse_genomes_project 10 112165442 112166046 + TEC TEC MGP_AJ_T0003009.1 MGP_AJ_G0002814.1 mouse_genomes_project 10 8196842 8197542 - Gm16577 antisense antisense MGP_AJ_T0024878.1 MGP_AJ_G0017101.1 mouse_genomes_project 10 29047349 30259594 - MGP_AJ_P0024878 Nkain2 protein_coding protein_coding MGP_AJ_T0024879.1 MGP_AJ_G0017101.1 mouse_genomes_project 10 29702864 29782675 - MGP_AJ_P0024879 Nkain2 protein_coding protein_coding MGP_AJ_T0024880.1 MGP_AJ_G0017101.1 mouse_genomes_project 10 30259037 30259595 - MGP_AJ_P0024880 Nkain2 protein_coding protein_coding MGP_AJ_T0011276.1 MGP_AJ_G0009398.1 mouse_genomes_project 10 90174562 90174717 - Gm27544 misc_RNA misc_RNA MGP_AJ_T0027512.1 MGP_AJ_G0017856.1 mouse_genomes_project 10 127200943 127220480 + MGP_AJ_P0027512 Pym1 protein_coding protein_coding MGP_AJ_T0027513.1 MGP_AJ_G0017856.1 mouse_genomes_project 10 127201519 127220480 + MGP_AJ_P0027513 Pym1 protein_coding protein_coding MGP_AJ_T0025616.1 MGP_AJ_G0017316.1 mouse_genomes_project 10 68105508 68145300 - MGP_AJ_P0025616 Phyhipl protein_coding protein_coding MGP_AJ_T0025617.1 MGP_AJ_G0017316.1 mouse_genomes_project 10 68105964 68202155 - MGP_AJ_P0025617 Phyhipl protein_coding protein_coding MGP_AJ_T0025618.1 MGP_AJ_G0017316.1 mouse_genomes_project 10 68110127 68145275 - Phyhipl protein_coding retained_intron MGP_AJ_T0025619.1 MGP_AJ_G0017316.1 mouse_genomes_project 10 68114083 68145483 - Phyhipl protein_coding retained_intron MGP_AJ_T0025620.1 MGP_AJ_G0017316.1 mouse_genomes_project 10 68117171 68202162 - MGP_AJ_P0025620 Phyhipl protein_coding protein_coding MGP_AJ_T0025621.1 MGP_AJ_G0017316.1 mouse_genomes_project 10 68147241 68198122 - Phyhipl protein_coding processed_transcript MGP_AJ_T0025622.1 MGP_AJ_G0017316.1 mouse_genomes_project 10 68147325 68202160 - Phyhipl protein_coding processed_transcript MGP_AJ_T0025623.1 MGP_AJ_G0017316.1 mouse_genomes_project 10 68153279 68153754 - Phyhipl protein_coding processed_transcript MGP_AJ_T0025624.1 MGP_AJ_G0017316.1 mouse_genomes_project 10 68153789 68172561 - Phyhipl protein_coding processed_transcript MGP_AJ_T0025448.1 MGP_AJ_G0017284.1 mouse_genomes_project 10 60353038 60432024 - MGP_AJ_P0025448 Tet1 protein_coding protein_coding MGP_AJ_T0025449.1 MGP_AJ_G0017284.1 mouse_genomes_project 10 60353045 60451450 - MGP_AJ_P0025449 Tet1 protein_coding protein_coding MGP_AJ_T0025450.1 MGP_AJ_G0017284.1 mouse_genomes_project 10 60361090 60363009 - MGP_AJ_P0025450 Tet1 protein_coding protein_coding MGP_AJ_T0025451.1 MGP_AJ_G0017284.1 mouse_genomes_project 10 60361594 60363010 - MGP_AJ_P0025451 Tet1 protein_coding nonsense_mediated_decay MGP_AJ_T0025452.1 MGP_AJ_G0017284.1 mouse_genomes_project 10 60361816 60363008 - MGP_AJ_P0025452 Tet1 protein_coding protein_coding MGP_AJ_T0025453.1 MGP_AJ_G0017284.1 mouse_genomes_project 10 60389023 60417268 - Tet1 protein_coding processed_transcript MGP_AJ_T0027064.1 MGP_AJ_G0017704.1 mouse_genomes_project 10 110305023 110378983 + MGP_AJ_P0027064 protein_coding protein_coding MGP_AJ_T0003066.1 MGP_AJ_G0002860.1 mouse_genomes_project 10 80048891 80068742 + Gm15608 antisense antisense MGP_AJ_T0003067.1 MGP_AJ_G0002860.1 mouse_genomes_project 10 80055153 80068723 + Gm15608 antisense antisense MGP_AJ_T0009583.1 MGP_AJ_G0007705.1 mouse_genomes_project 10 49677135 49677272 + Gm24084 miRNA miRNA MGP_AJ_T0003082.1 MGP_AJ_G0002872.1 mouse_genomes_project 10 97344620 97349953 - Gm16239 antisense antisense MGP_AJ_T0009574.1 MGP_AJ_G0007696.1 mouse_genomes_project 10 20044596 20044657 - Mir7663 miRNA miRNA MGP_AJ_T0025502.1 MGP_AJ_G0017297.1 mouse_genomes_project 10 61477062 61642573 - MGP_AJ_P0025502 Lrrtm3 protein_coding protein_coding MGP_AJ_T0025503.1 MGP_AJ_G0017297.1 mouse_genomes_project 10 61478480 61642576 - Lrrtm3 protein_coding processed_transcript MGP_AJ_T0025504.1 MGP_AJ_G0017297.1 mouse_genomes_project 10 61639794 61642546 - Lrrtm3 protein_coding retained_intron MGP_AJ_T0025505.1 MGP_AJ_G0017297.1 mouse_genomes_project 10 61641352 61642549 - MGP_AJ_P0025505 Lrrtm3 protein_coding protein_coding MGP_AJ_T0026621.1 MGP_AJ_G0017579.1 mouse_genomes_project 10 83106272 83159654 - MGP_AJ_P0026621 Cry1 protein_coding protein_coding MGP_AJ_T0017126.1 MGP_AJ_G0015114.1 mouse_genomes_project 10 103678179 103686280 + Gm15663 processed_transcript antisense MGP_AJ_T0017127.1 MGP_AJ_G0015114.1 mouse_genomes_project 10 103678787 103688139 + Gm15663 processed_transcript lincRNA MGP_AJ_T0025446.1 MGP_AJ_G0017283.1 mouse_genomes_project 10 60287559 60339522 - MGP_AJ_P0025446 Ccar1 protein_coding unknown_likely_coding MGP_AJ_T0025447.1 MGP_AJ_G0017283.1 mouse_genomes_project 10 60287564 60339588 - MGP_AJ_P0025447 Ccar1 protein_coding protein_coding MGP_AJ_T0011267.1 MGP_AJ_G0009389.1 mouse_genomes_project 10 22606230 22606483 - Gm26167 misc_RNA misc_RNA MGP_AJ_T0099282.1 MGP_AJ_G0037248.1 mouse_genomes_project 10 84088782 84088886 - Gm24430 snRNA snRNA MGP_AJ_T0027480.1 MGP_AJ_G0017844.1 mouse_genomes_project 10 126943374 126958914 - MGP_AJ_P0027480 Esyt1 protein_coding protein_coding MGP_AJ_T0024815.1 MGP_AJ_G0017078.1 mouse_genomes_project 10 23377102 23378295 + MGP_AJ_P0024815 Gm9767 protein_coding protein_coding MGP_AJ_T0026475.1 MGP_AJ_G0017541.1 mouse_genomes_project 10 79307772 79313640 - Gna15 protein_coding retained_intron MGP_AJ_T0026476.1 MGP_AJ_G0017541.1 mouse_genomes_project 10 79307779 79330055 - MGP_AJ_P0026476 Gna15 protein_coding protein_coding MGP_AJ_T0026477.1 MGP_AJ_G0017541.1 mouse_genomes_project 10 79308553 79318106 - Gna15 protein_coding retained_intron MGP_AJ_T0027352.1 MGP_AJ_G0017800.1 mouse_genomes_project 10 125885480 125890832 - MGP_AJ_P0027352 Shmt2 protein_coding protein_coding MGP_AJ_T0012398.1 MGP_AJ_G0010493.1 mouse_genomes_project 10 23141715 23142333 - processed_pseudogene processed_pseudogene MGP_AJ_T0012431.1 MGP_AJ_G0010526.1 mouse_genomes_project 10 73529764 73530157 - processed_pseudogene processed_pseudogene MGP_AJ_T0024969.1 MGP_AJ_G0017135.1 mouse_genomes_project 10 37504667 37529935 - MGP_AJ_P0024969 Mfsd4b1 protein_coding protein_coding MGP_AJ_T0024970.1 MGP_AJ_G0017135.1 mouse_genomes_project 10 37511226 37529826 - Mfsd4b1 protein_coding processed_transcript MGP_AJ_T0026546.1 MGP_AJ_G0017557.1 mouse_genomes_project 10 80562033 80573482 + Tdg protein_coding processed_transcript MGP_AJ_T0026547.1 MGP_AJ_G0017557.1 mouse_genomes_project 10 80562033 80584337 + MGP_AJ_P0026547 Tdg protein_coding protein_coding MGP_AJ_T0026548.1 MGP_AJ_G0017557.1 mouse_genomes_project 10 80562798 80576367 + MGP_AJ_P0026548 Tdg protein_coding protein_coding MGP_AJ_T0026549.1 MGP_AJ_G0017557.1 mouse_genomes_project 10 80573312 80576383 + Tdg protein_coding retained_intron MGP_AJ_T0026550.1 MGP_AJ_G0017557.1 mouse_genomes_project 10 80573600 80580239 + MGP_AJ_P0026550 Tdg protein_coding protein_coding MGP_AJ_T0026551.1 MGP_AJ_G0017557.1 mouse_genomes_project 10 80576101 80576739 + Tdg protein_coding retained_intron MGP_AJ_T0026552.1 MGP_AJ_G0017557.1 mouse_genomes_project 10 80576515 80579758 + Tdg protein_coding retained_intron MGP_AJ_T0026553.1 MGP_AJ_G0017557.1 mouse_genomes_project 10 80579060 80580409 + Tdg protein_coding retained_intron MGP_AJ_T0003098.1 MGP_AJ_G0002881.1 mouse_genomes_project 10 118081840 118110648 - Grip1os1 antisense antisense MGP_AJ_T0003099.1 MGP_AJ_G0002881.1 mouse_genomes_project 10 118105392 118110535 - Grip1os1 antisense antisense MGP_AJ_T0000832.1 MGP_AJ_G0000767.1 mouse_genomes_project 10 116245568 116245918 + TEC TEC MGP_AJ_T0025714.1 MGP_AJ_G0017331.1 mouse_genomes_project 10 72914244 73095968 - MGP_AJ_P0025714 Gucd1 protein_coding nonsense_mediated_decay MGP_AJ_T0025718.1 MGP_AJ_G0017331.1 mouse_genomes_project 10 72982634 73089980 - MGP_AJ_P0025718 Gucd1 protein_coding protein_coding MGP_AJ_T0025720.1 MGP_AJ_G0017331.1 mouse_genomes_project 10 73087496 73095984 - MGP_AJ_P0025720 Gucd1 protein_coding nonsense_mediated_decay MGP_AJ_T0025721.1 MGP_AJ_G0017331.1 mouse_genomes_project 10 73087530 73089963 - Gucd1 protein_coding retained_intron MGP_AJ_T0025722.1 MGP_AJ_G0017331.1 mouse_genomes_project 10 73087576 73095891 - MGP_AJ_P0025722 Gucd1 protein_coding protein_coding MGP_AJ_T0025723.1 MGP_AJ_G0017331.1 mouse_genomes_project 10 73087663 73095865 - MGP_AJ_P0025723 Gucd1 protein_coding protein_coding MGP_AJ_T0025724.1 MGP_AJ_G0017331.1 mouse_genomes_project 10 73088415 73096551 - MGP_AJ_P0025724 Gucd1 protein_coding protein_coding MGP_AJ_T0025725.1 MGP_AJ_G0017331.1 mouse_genomes_project 10 73089878 73095955 - MGP_AJ_P0025725 Gucd1 protein_coding nonsense_mediated_decay MGP_AJ_T0003080.1 MGP_AJ_G0002870.1 mouse_genomes_project 10 91794773 91803845 - Gm15915 antisense antisense MGP_AJ_T0009628.1 MGP_AJ_G0007750.1 mouse_genomes_project 10 107416299 107416382 - Gm44495 miRNA miRNA MGP_AJ_T0006153.1 MGP_AJ_G0005137.1 mouse_genomes_project 10 109595279 109596367 - Gm28592 lincRNA lincRNA MGP_AJ_T0100511.1 MGP_AJ_G0038477.1 mouse_genomes_project 10 24782036 24782108 + Gm23353 snoRNA snoRNA MGP_AJ_T0024985.1 MGP_AJ_G0017142.1 mouse_genomes_project 10 38138849 38160225 + MGP_AJ_P0024985 Ddo protein_coding protein_coding MGP_AJ_T0099295.1 MGP_AJ_G0037261.1 mouse_genomes_project 10 107460578 107460684 - Gm23041 snRNA snRNA MGP_AJ_T0026862.1 MGP_AJ_G0017633.1 mouse_genomes_project 10 91702142 91708802 - MGP_AJ_P0026862 Snrpf protein_coding protein_coding MGP_AJ_T0026437.1 MGP_AJ_G0017534.1 mouse_genomes_project 10 79170033 79182690 - MGP_AJ_P0026437 Fzr1 protein_coding protein_coding MGP_AJ_T0026438.1 MGP_AJ_G0017534.1 mouse_genomes_project 10 79170909 79182625 - MGP_AJ_P0026438 Fzr1 protein_coding nonsense_mediated_decay MGP_AJ_T0026439.1 MGP_AJ_G0017534.1 mouse_genomes_project 10 79171183 79182637 - Fzr1 protein_coding retained_intron MGP_AJ_T0026440.1 MGP_AJ_G0017534.1 mouse_genomes_project 10 79171320 79175225 - MGP_AJ_P0026440 Fzr1 protein_coding protein_coding MGP_AJ_T0026441.1 MGP_AJ_G0017534.1 mouse_genomes_project 10 79172087 79173353 - Fzr1 protein_coding retained_intron MGP_AJ_T0026442.1 MGP_AJ_G0017534.1 mouse_genomes_project 10 79179536 79182554 - Fzr1 protein_coding processed_transcript MGP_AJ_T0012438.1 MGP_AJ_G0010533.1 mouse_genomes_project 10 91785648 91786503 - processed_pseudogene processed_pseudogene MGP_AJ_T0025527.1 MGP_AJ_G0017304.1 mouse_genomes_project 10 65404288 65430820 - MGP_AJ_P0025527 Zfp365 protein_coding protein_coding MGP_AJ_T0025528.1 MGP_AJ_G0017304.1 mouse_genomes_project 10 65404353 65419461 - Zfp365 protein_coding processed_transcript MGP_AJ_T0025529.1 MGP_AJ_G0017304.1 mouse_genomes_project 10 65408140 65417147 - Zfp365 protein_coding processed_transcript MGP_AJ_T0025530.1 MGP_AJ_G0017304.1 mouse_genomes_project 10 65414844 65430593 - Zfp365 protein_coding retained_intron MGP_AJ_T0009598.1 MGP_AJ_G0007720.1 mouse_genomes_project 10 76138426 76138530 + Mir6410 miRNA miRNA MGP_AJ_T0024766.1 MGP_AJ_G0017057.1 mouse_genomes_project 10 21253078 21254122 + MGP_AJ_P0024766 Taar4 protein_coding protein_coding MGP_AJ_T0024887.1 MGP_AJ_G0017104.1 mouse_genomes_project 10 31254385 31273747 - MGP_AJ_P0024887 Sult3a2 protein_coding unknown_likely_coding MGP_AJ_T0025485.1 MGP_AJ_G0017292.1 mouse_genomes_project 10 60792485 60868134 + MGP_AJ_P0025485 Herc4 protein_coding protein_coding MGP_AJ_T0025486.1 MGP_AJ_G0017292.1 mouse_genomes_project 10 60792632 60867741 + MGP_AJ_P0025486 Herc4 protein_coding unknown_likely_coding MGP_AJ_T0027239.1 MGP_AJ_G0017764.1 mouse_genomes_project 10 120738660 120743613 + MGP_AJ_P0027239 Avpr1a protein_coding protein_coding MGP_AJ_T0027559.1 MGP_AJ_G0017883.1 mouse_genomes_project 10 127981918 127982854 + MGP_AJ_P0027559 Olfr788 protein_coding protein_coding MGP_AJ_T0026912.1 MGP_AJ_G0017645.1 mouse_genomes_project 10 92913974 93069643 - MGP_AJ_P0026912 Plxnc1 protein_coding protein_coding MGP_AJ_T0026913.1 MGP_AJ_G0017645.1 mouse_genomes_project 10 92960465 92967186 - Plxnc1 protein_coding retained_intron MGP_AJ_T0026914.1 MGP_AJ_G0017645.1 mouse_genomes_project 10 92977870 92994462 - MGP_AJ_P0026914 Plxnc1 protein_coding nonsense_mediated_decay MGP_AJ_T0026915.1 MGP_AJ_G0017645.1 mouse_genomes_project 10 92994243 93047238 - Plxnc1 protein_coding retained_intron MGP_AJ_T0099302.1 MGP_AJ_G0037268.1 mouse_genomes_project 10 125482591 125482680 - Gm23664 snRNA snRNA MGP_AJ_T0003039.1 MGP_AJ_G0002837.1 mouse_genomes_project 10 60550255 60551117 + Gm16135 antisense antisense MGP_AJ_T0024408.1 MGP_AJ_G0016961.1 mouse_genomes_project 10 2000020 2002804 + MGP_AJ_P0024408 Gm10097 protein_coding protein_coding MGP_AJ_T0009617.1 MGP_AJ_G0007739.1 mouse_genomes_project 10 90701795 90701889 + Gm22582 miRNA miRNA MGP_AJ_T0100510.1 MGP_AJ_G0038476.1 mouse_genomes_project 10 22590513 22590644 - Gm25016 snoRNA snoRNA MGP_AJ_T0024378.1 MGP_AJ_G0016956.1 mouse_genomes_project 10 1323825 1355487 - MGP_AJ_P0024378 Rmnd1 protein_coding protein_coding MGP_AJ_T0024379.1 MGP_AJ_G0016956.1 mouse_genomes_project 10 1325300 1330270 - Rmnd1 protein_coding retained_intron MGP_AJ_T0024380.1 MGP_AJ_G0016956.1 mouse_genomes_project 10 1325677 1330081 - MGP_AJ_P0024380 Rmnd1 protein_coding protein_coding MGP_AJ_T0024381.1 MGP_AJ_G0016956.1 mouse_genomes_project 10 1326115 1336250 - Rmnd1 protein_coding retained_intron MGP_AJ_T0024382.1 MGP_AJ_G0016956.1 mouse_genomes_project 10 1349096 1355443 - Rmnd1 protein_coding retained_intron MGP_AJ_T0024383.1 MGP_AJ_G0016956.1 mouse_genomes_project 10 1350245 1355394 - MGP_AJ_P0024383 Rmnd1 protein_coding protein_coding MGP_AJ_T0024384.1 MGP_AJ_G0016956.1 mouse_genomes_project 10 1350447 1355433 - MGP_AJ_P0024384 Rmnd1 protein_coding protein_coding MGP_AJ_T0024385.1 MGP_AJ_G0016956.1 mouse_genomes_project 10 1350525 1355433 - MGP_AJ_P0024385 Rmnd1 protein_coding protein_coding MGP_AJ_T0024386.1 MGP_AJ_G0016956.1 mouse_genomes_project 10 1351633 1355400 - Rmnd1 protein_coding retained_intron MGP_AJ_T0100544.1 MGP_AJ_G0038510.1 mouse_genomes_project 10 104031206 104031338 - Gm24237 snoRNA snoRNA MGP_AJ_T0099291.1 MGP_AJ_G0037257.1 mouse_genomes_project 10 102399862 102399924 - Gm22339 snRNA snRNA MGP_AJ_T0026517.1 MGP_AJ_G0017547.1 mouse_genomes_project 10 79428608 79434357 - MGP_AJ_P0026517 Sirt6 protein_coding protein_coding MGP_AJ_T0026518.1 MGP_AJ_G0017547.1 mouse_genomes_project 10 79432346 79434386 - Sirt6 protein_coding retained_intron MGP_AJ_T0012409.1 MGP_AJ_G0010504.1 mouse_genomes_project 10 39874996 39875474 - processed_pseudogene processed_pseudogene MGP_AJ_T0003019.1 MGP_AJ_G0002823.1 mouse_genomes_project 10 30959567 30997814 + Gm15939 antisense antisense MGP_AJ_T0099274.1 MGP_AJ_G0037240.1 mouse_genomes_project 10 73191833 73191946 - Gm26402 snRNA snRNA MGP_AJ_T0027524.1 MGP_AJ_G0017864.1 mouse_genomes_project 10 127370475 127376181 - MGP_AJ_P0027524 Rdh5 protein_coding protein_coding MGP_AJ_T0027525.1 MGP_AJ_G0017864.1 mouse_genomes_project 10 127370699 127374936 - MGP_AJ_P0027525 Rdh5 protein_coding protein_coding MGP_AJ_T0027526.1 MGP_AJ_G0017864.1 mouse_genomes_project 10 127370728 127371506 - Rdh5 protein_coding retained_intron MGP_AJ_T0027527.1 MGP_AJ_G0017864.1 mouse_genomes_project 10 127371107 127376156 - MGP_AJ_P0027527 Rdh5 protein_coding protein_coding MGP_AJ_T0027528.1 MGP_AJ_G0017864.1 mouse_genomes_project 10 127374184 127376181 - Rdh5 protein_coding retained_intron MGP_AJ_T0027530.1 MGP_AJ_G0017864.1 mouse_genomes_project 10 127374807 127375589 - MGP_AJ_P0027530 Rdh5 protein_coding protein_coding MGP_AJ_T0027531.1 MGP_AJ_G0017864.1 mouse_genomes_project 10 127375303 127379772 - MGP_AJ_P0027531 Rdh5 protein_coding protein_coding MGP_AJ_T0026581.1 MGP_AJ_G0017566.1 mouse_genomes_project 10 81450490 81494502 - MGP_AJ_P0026581 Aldh1l2 protein_coding protein_coding MGP_AJ_T0026582.1 MGP_AJ_G0017566.1 mouse_genomes_project 10 81453248 81455930 - Aldh1l2 protein_coding processed_transcript MGP_AJ_T0026583.1 MGP_AJ_G0017566.1 mouse_genomes_project 10 81454652 81457415 - Aldh1l2 protein_coding processed_transcript MGP_AJ_T0026584.1 MGP_AJ_G0017566.1 mouse_genomes_project 10 81454654 81494569 - Aldh1l2 protein_coding retained_intron MGP_AJ_T0026585.1 MGP_AJ_G0017566.1 mouse_genomes_project 10 81459728 81468012 - Aldh1l2 protein_coding processed_transcript MGP_AJ_T0026586.1 MGP_AJ_G0017566.1 mouse_genomes_project 10 81463916 81473735 - Aldh1l2 protein_coding processed_transcript MGP_AJ_T0027574.1 MGP_AJ_G0017894.1 mouse_genomes_project 10 128192789 128193925 - MGP_AJ_P0027574 Olfr802 protein_coding protein_coding MGP_AJ_T0027575.1 MGP_AJ_G0017894.1 mouse_genomes_project 10 128192789 128197210 - MGP_AJ_P0027575 Olfr802 protein_coding protein_coding MGP_AJ_T0026742.1 MGP_AJ_G0017610.1 mouse_genomes_project 10 86802166 86807210 + MGP_AJ_P0026742 Arl1 protein_coding protein_coding MGP_AJ_T0026743.1 MGP_AJ_G0017610.1 mouse_genomes_project 10 86802376 86814848 + MGP_AJ_P0026743 Arl1 protein_coding protein_coding MGP_AJ_T0026744.1 MGP_AJ_G0017610.1 mouse_genomes_project 10 86802869 86814848 + MGP_AJ_P0026744 Arl1 protein_coding protein_coding MGP_AJ_T0009576.1 MGP_AJ_G0007698.1 mouse_genomes_project 10 22382019 22382104 + Gm22566 miRNA miRNA MGP_AJ_T0025702.1 MGP_AJ_G0017327.1 mouse_genomes_project 10 72596518 72608307 + Rab36 protein_coding retained_intron MGP_AJ_T0025703.1 MGP_AJ_G0017327.1 mouse_genomes_project 10 72596526 72614267 + MGP_AJ_P0025703 Rab36 protein_coding protein_coding MGP_AJ_T0025704.1 MGP_AJ_G0017327.1 mouse_genomes_project 10 72596544 72613622 + MGP_AJ_P0025704 Rab36 protein_coding protein_coding MGP_AJ_T0025705.1 MGP_AJ_G0017327.1 mouse_genomes_project 10 72596686 72607091 + Rab36 protein_coding retained_intron MGP_AJ_T0025706.1 MGP_AJ_G0017327.1 mouse_genomes_project 10 72596733 72605613 + Rab36 protein_coding retained_intron MGP_AJ_T0025707.1 MGP_AJ_G0017327.1 mouse_genomes_project 10 72596782 72610214 + MGP_AJ_P0025707 Rab36 protein_coding protein_coding MGP_AJ_T0025708.1 MGP_AJ_G0017327.1 mouse_genomes_project 10 72597296 72613580 + MGP_AJ_P0025708 Rab36 protein_coding protein_coding MGP_AJ_T0025709.1 MGP_AJ_G0017327.1 mouse_genomes_project 10 72597683 72610209 + Rab36 protein_coding retained_intron MGP_AJ_T0024659.1 MGP_AJ_G0017019.1 mouse_genomes_project 10 15843941 15850363 - MGP_AJ_P0024659 Gm4922 protein_coding protein_coding MGP_AJ_T0026720.1 MGP_AJ_G0017606.1 mouse_genomes_project 10 86512801 86536403 - MGP_AJ_P0026720 Chpt1 protein_coding protein_coding MGP_AJ_T0026721.1 MGP_AJ_G0017606.1 mouse_genomes_project 10 86513060 86540827 - MGP_AJ_P0026721 Chpt1 protein_coding protein_coding MGP_AJ_T0026725.1 MGP_AJ_G0017606.1 mouse_genomes_project 10 86529461 86565049 - MGP_AJ_P0026725 Chpt1 protein_coding protein_coding MGP_AJ_T0026726.1 MGP_AJ_G0017606.1 mouse_genomes_project 10 86532381 86564975 - MGP_AJ_P0026726 Chpt1 protein_coding nonsense_mediated_decay MGP_AJ_T0026727.1 MGP_AJ_G0017606.1 mouse_genomes_project 10 86532779 86564946 - MGP_AJ_P0026727 Chpt1 protein_coding protein_coding MGP_AJ_T0026728.1 MGP_AJ_G0017606.1 mouse_genomes_project 10 86532779 86564729 - MGP_AJ_P0026728 Chpt1 protein_coding nonsense_mediated_decay MGP_AJ_T0026729.1 MGP_AJ_G0017606.1 mouse_genomes_project 10 86532801 86564865 - MGP_AJ_P0026729 Chpt1 protein_coding nonsense_mediated_decay MGP_AJ_T0026730.1 MGP_AJ_G0017606.1 mouse_genomes_project 10 86546942 86564894 - MGP_AJ_P0026730 Chpt1 protein_coding protein_coding MGP_AJ_T0026731.1 MGP_AJ_G0017606.1 mouse_genomes_project 10 86548391 86564901 - MGP_AJ_P0026731 Chpt1 protein_coding protein_coding MGP_AJ_T0003101.1 MGP_AJ_G0002883.1 mouse_genomes_project 10 119187247 119189842 + Gm4473 antisense antisense MGP_AJ_T0098376.1 MGP_AJ_G0036360.1 mouse_genomes_project 10 56260242 56260811 - pseudogene pseudogene MGP_AJ_T0009642.1 MGP_AJ_G0007764.1 mouse_genomes_project 10 126809221 126809290 + Mir6914 miRNA miRNA MGP_AJ_T0003104.1 MGP_AJ_G0002886.1 mouse_genomes_project 10 126034840 126036486 + Gm16229 antisense antisense MGP_AJ_T0025810.1 MGP_AJ_G0017360.1 mouse_genomes_project 10 74050190 74059685 - MGP_AJ_P0025810 Ybey protein_coding protein_coding MGP_AJ_T0026932.1 MGP_AJ_G0017655.1 mouse_genomes_project 10 95731684 95738874 + MGP_AJ_P0026932 Lum protein_coding protein_coding MGP_AJ_T0027587.1 MGP_AJ_G0017903.1 mouse_genomes_project 10 128322055 128323015 - MGP_AJ_P0027587 Olfr811 protein_coding protein_coding MGP_AJ_T0099266.1 MGP_AJ_G0037232.1 mouse_genomes_project 10 51924065 51924172 - Gm26177 snRNA snRNA MGP_AJ_T0025563.1 MGP_AJ_G0017312.1 mouse_genomes_project 10 67063291 67404997 + protein_coding retained_intron MGP_AJ_T0025564.1 MGP_AJ_G0017312.1 mouse_genomes_project 10 67063291 67252486 + protein_coding processed_transcript MGP_AJ_T0025565.1 MGP_AJ_G0017312.1 mouse_genomes_project 10 67063291 67561812 + MGP_AJ_P0025565 protein_coding protein_coding MGP_AJ_T0025566.1 MGP_AJ_G0017312.1 mouse_genomes_project 10 67063334 67382382 + protein_coding retained_intron MGP_AJ_T0025567.1 MGP_AJ_G0017312.1 mouse_genomes_project 10 67063362 67558493 + MGP_AJ_P0025567 protein_coding protein_coding MGP_AJ_T0025568.1 MGP_AJ_G0017312.1 mouse_genomes_project 10 67063366 67558749 + MGP_AJ_P0025568 protein_coding protein_coding MGP_AJ_T0025569.1 MGP_AJ_G0017312.1 mouse_genomes_project 10 67063366 67558749 + MGP_AJ_P0025569 protein_coding protein_coding MGP_AJ_T0025570.1 MGP_AJ_G0017312.1 mouse_genomes_project 10 67063584 67356734 + MGP_AJ_P0025570 protein_coding protein_coding MGP_AJ_T0025571.1 MGP_AJ_G0017312.1 mouse_genomes_project 10 67063727 67557733 + MGP_AJ_P0025571 protein_coding protein_coding MGP_AJ_T0025572.1 MGP_AJ_G0017312.1 mouse_genomes_project 10 67063741 67549529 + MGP_AJ_P0025572 protein_coding protein_coding MGP_AJ_T0025573.1 MGP_AJ_G0017312.1 mouse_genomes_project 10 67063741 67549529 + MGP_AJ_P0025573 protein_coding protein_coding MGP_AJ_T0025574.1 MGP_AJ_G0017312.1 mouse_genomes_project 10 67063741 67549529 + MGP_AJ_P0025574 protein_coding protein_coding MGP_AJ_T0025575.1 MGP_AJ_G0017312.1 mouse_genomes_project 10 67063741 67549529 + MGP_AJ_P0025575 protein_coding protein_coding MGP_AJ_T0025576.1 MGP_AJ_G0017312.1 mouse_genomes_project 10 67063741 67549529 + MGP_AJ_P0025576 protein_coding protein_coding MGP_AJ_T0025577.1 MGP_AJ_G0017312.1 mouse_genomes_project 10 67237375 67241556 + protein_coding retained_intron MGP_AJ_T0025578.1 MGP_AJ_G0017312.1 mouse_genomes_project 10 67237449 67549527 + MGP_AJ_P0025578 protein_coding protein_coding MGP_AJ_T0025579.1 MGP_AJ_G0017312.1 mouse_genomes_project 10 67237553 67529280 + protein_coding retained_intron MGP_AJ_T0025580.1 MGP_AJ_G0017312.1 mouse_genomes_project 10 67237557 67354288 + protein_coding retained_intron MGP_AJ_T0025581.1 MGP_AJ_G0017312.1 mouse_genomes_project 10 67317233 67342156 + protein_coding retained_intron MGP_AJ_T0025582.1 MGP_AJ_G0017312.1 mouse_genomes_project 10 67317244 67391062 + MGP_AJ_P0025582 protein_coding protein_coding MGP_AJ_T0025583.1 MGP_AJ_G0017312.1 mouse_genomes_project 10 67319176 67381803 + MGP_AJ_P0025583 protein_coding protein_coding MGP_AJ_T0025584.1 MGP_AJ_G0017312.1 mouse_genomes_project 10 67432073 67557788 + MGP_AJ_P0025584 protein_coding protein_coding MGP_AJ_T0025585.1 MGP_AJ_G0017312.1 mouse_genomes_project 10 67433011 67507937 + MGP_AJ_P0025585 protein_coding protein_coding MGP_AJ_T0025586.1 MGP_AJ_G0017312.1 mouse_genomes_project 10 67448632 67487559 + protein_coding retained_intron MGP_AJ_T0025587.1 MGP_AJ_G0017312.1 mouse_genomes_project 10 67459237 67460081 + protein_coding retained_intron MGP_AJ_T0025588.1 MGP_AJ_G0017312.1 mouse_genomes_project 10 67459237 67557824 + MGP_AJ_P0025588 protein_coding protein_coding MGP_AJ_T0025589.1 MGP_AJ_G0017312.1 mouse_genomes_project 10 67459274 67558821 + MGP_AJ_P0025589 protein_coding protein_coding MGP_AJ_T0025590.1 MGP_AJ_G0017312.1 mouse_genomes_project 10 67459515 67558749 + MGP_AJ_P0025590 protein_coding protein_coding MGP_AJ_T0025591.1 MGP_AJ_G0017312.1 mouse_genomes_project 10 67459515 67558749 + MGP_AJ_P0025591 protein_coding protein_coding MGP_AJ_T0025592.1 MGP_AJ_G0017312.1 mouse_genomes_project 10 67459515 67558749 + MGP_AJ_P0025592 protein_coding protein_coding MGP_AJ_T0025593.1 MGP_AJ_G0017312.1 mouse_genomes_project 10 67459547 67549701 + MGP_AJ_P0025593 protein_coding protein_coding MGP_AJ_T0025594.1 MGP_AJ_G0017312.1 mouse_genomes_project 10 67459561 67528550 + protein_coding retained_intron MGP_AJ_T0025595.1 MGP_AJ_G0017312.1 mouse_genomes_project 10 67459696 67558510 + MGP_AJ_P0025595 protein_coding protein_coding MGP_AJ_T0025596.1 MGP_AJ_G0017312.1 mouse_genomes_project 10 67459822 67558493 + MGP_AJ_P0025596 protein_coding protein_coding MGP_AJ_T0025597.1 MGP_AJ_G0017312.1 mouse_genomes_project 10 67459875 67557862 + MGP_AJ_P0025597 protein_coding protein_coding MGP_AJ_T0025598.1 MGP_AJ_G0017312.1 mouse_genomes_project 10 67507848 67516352 + protein_coding retained_intron MGP_AJ_T0025599.1 MGP_AJ_G0017312.1 mouse_genomes_project 10 67512520 67533450 + MGP_AJ_P0025599 protein_coding protein_coding MGP_AJ_T0025600.1 MGP_AJ_G0017312.1 mouse_genomes_project 10 67513411 67520150 + MGP_AJ_P0025600 protein_coding protein_coding MGP_AJ_T0025601.1 MGP_AJ_G0017312.1 mouse_genomes_project 10 67514372 67558749 + MGP_AJ_P0025601 protein_coding protein_coding MGP_AJ_T0025602.1 MGP_AJ_G0017312.1 mouse_genomes_project 10 67516173 67533655 + protein_coding retained_intron MGP_AJ_T0025603.1 MGP_AJ_G0017312.1 mouse_genomes_project 10 67521888 67558495 + MGP_AJ_P0025603 protein_coding protein_coding MGP_AJ_T0025604.1 MGP_AJ_G0017312.1 mouse_genomes_project 10 67523974 67558314 + MGP_AJ_P0025604 protein_coding nonsense_mediated_decay MGP_AJ_T0025605.1 MGP_AJ_G0017312.1 mouse_genomes_project 10 67526130 67532120 + MGP_AJ_P0025605 protein_coding protein_coding MGP_AJ_T0025606.1 MGP_AJ_G0017312.1 mouse_genomes_project 10 67528342 67538676 + protein_coding retained_intron MGP_AJ_T0026142.1 MGP_AJ_G0017459.1 mouse_genomes_project 10 77817067 77863576 - MGP_AJ_P0026142 Sbno2 protein_coding unknown_likely_coding MGP_AJ_T0026143.1 MGP_AJ_G0017459.1 mouse_genomes_project 10 77817493 77863644 - MGP_AJ_P0026143 Sbno2 protein_coding protein_coding MGP_AJ_T0098522.1 MGP_AJ_G0036506.1 mouse_genomes_project 10 23662366 23662466 + Gm23757 rRNA rRNA MGP_AJ_T0003021.1 MGP_AJ_G0002825.1 mouse_genomes_project 10 37057670 37088094 - Gm16365 antisense antisense MGP_AJ_T0003022.1 MGP_AJ_G0002825.1 mouse_genomes_project 10 37059199 37112994 - Gm16365 antisense antisense MGP_AJ_T0003023.1 MGP_AJ_G0002825.1 mouse_genomes_project 10 37061554 37112998 - Gm16365 antisense antisense MGP_AJ_T0003024.1 MGP_AJ_G0002825.1 mouse_genomes_project 10 37095443 37113009 - Gm16365 antisense antisense MGP_AJ_T0024677.1 MGP_AJ_G0017027.1 mouse_genomes_project 10 16904275 16907818 - MGP_AJ_P0024677 Slc35d3 protein_coding protein_coding MGP_AJ_T0024552.1 MGP_AJ_G0016994.1 mouse_genomes_project 10 9938553 9962608 - MGP_AJ_P0024552 Stx11 protein_coding protein_coding MGP_AJ_T0024553.1 MGP_AJ_G0016994.1 mouse_genomes_project 10 9938553 9962608 - MGP_AJ_P0024553 Stx11 protein_coding protein_coding MGP_AJ_T0100516.1 MGP_AJ_G0038482.1 mouse_genomes_project 10 35708781 35708849 + Gm24297 snoRNA snoRNA MGP_AJ_T0006108.1 MGP_AJ_G0005110.1 mouse_genomes_project 10 64418485 64426262 - 1110002J07Rik lincRNA lincRNA MGP_AJ_T0026512.1 MGP_AJ_G0017546.1 mouse_genomes_project 10 79413360 79427523 + BC025920 protein_coding processed_transcript MGP_AJ_T0026513.1 MGP_AJ_G0017546.1 mouse_genomes_project 10 79413393 79416927 + MGP_AJ_P0026513 BC025920 protein_coding protein_coding MGP_AJ_T0026514.1 MGP_AJ_G0017546.1 mouse_genomes_project 10 79413973 79416636 + MGP_AJ_P0026514 BC025920 protein_coding protein_coding MGP_AJ_T0026515.1 MGP_AJ_G0017546.1 mouse_genomes_project 10 79413973 79416636 + MGP_AJ_P0026515 BC025920 protein_coding protein_coding MGP_AJ_T0026516.1 MGP_AJ_G0017546.1 mouse_genomes_project 10 79414115 79416900 + MGP_AJ_P0026516 BC025920 protein_coding protein_coding MGP_AJ_T0099240.1 MGP_AJ_G0037206.1 mouse_genomes_project 10 1024151 1024308 + Gm25515 snRNA snRNA MGP_AJ_T0024453.1 MGP_AJ_G0016969.1 mouse_genomes_project 10 3837586 3939066 - MGP_AJ_P0024453 Ipcef1 protein_coding protein_coding MGP_AJ_T0024454.1 MGP_AJ_G0016969.1 mouse_genomes_project 10 3837622 3966644 - MGP_AJ_P0024454 Ipcef1 protein_coding protein_coding MGP_AJ_T0024455.1 MGP_AJ_G0016969.1 mouse_genomes_project 10 3858483 4016918 - MGP_AJ_P0024455 Ipcef1 protein_coding protein_coding MGP_AJ_T0024456.1 MGP_AJ_G0016969.1 mouse_genomes_project 10 3858483 3985348 - MGP_AJ_P0024456 Ipcef1 protein_coding protein_coding MGP_AJ_T0024457.1 MGP_AJ_G0016969.1 mouse_genomes_project 10 3864485 3939673 - Ipcef1 protein_coding processed_transcript MGP_AJ_T0024458.1 MGP_AJ_G0016969.1 mouse_genomes_project 10 3864485 3939824 - Ipcef1 protein_coding processed_transcript MGP_AJ_T0024459.1 MGP_AJ_G0016969.1 mouse_genomes_project 10 3866768 3985330 - MGP_AJ_P0024459 Ipcef1 protein_coding protein_coding MGP_AJ_T0024460.1 MGP_AJ_G0016969.1 mouse_genomes_project 10 3866848 3939893 - Ipcef1 protein_coding processed_transcript MGP_AJ_T0024461.1 MGP_AJ_G0016969.1 mouse_genomes_project 10 3912252 3963725 - MGP_AJ_P0024461 Ipcef1 protein_coding protein_coding MGP_AJ_T0026945.1 MGP_AJ_G0017664.1 mouse_genomes_project 10 97290358 97291517 - MGP_AJ_P0026945 Phxr2 protein_coding protein_coding MGP_AJ_T0101699.1 MGP_AJ_G0039651.1 mouse_genomes_project 10 26212037 26245516 - transcribed_processed_pseudogene processed_transcript MGP_AJ_T0101700.1 MGP_AJ_G0039651.1 mouse_genomes_project 10 26245077 26258679 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0025140.1 MGP_AJ_G0017189.1 mouse_genomes_project 10 48500037 48602701 + MGP_AJ_P0025140 Sim1 protein_coding protein_coding MGP_AJ_T0102218.1 MGP_AJ_G0039961.1 mouse_genomes_project 10 127810930 127811137 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0025971.1 MGP_AJ_G0017400.1 mouse_genomes_project 10 76129373 76131323 + MGP_AJ_P0025971 Cstb protein_coding protein_coding MGP_AJ_T0098383.1 MGP_AJ_G0036367.1 mouse_genomes_project 10 114773992 114776231 + pseudogene pseudogene MGP_AJ_T0003106.1 MGP_AJ_G0002888.1 mouse_genomes_project 10 126818220 126821947 - Gm17201 antisense antisense MGP_AJ_T0026856.1 MGP_AJ_G0017631.1 mouse_genomes_project 10 91638449 91657200 - MGP_AJ_P0026856 Amdhd1 protein_coding protein_coding MGP_AJ_T0017132.1 MGP_AJ_G0015116.1 mouse_genomes_project 10 119147592 119153289 + Gm15910 processed_transcript processed_transcript MGP_AJ_T0006168.1 MGP_AJ_G0005148.1 mouse_genomes_project 10 127094065 127097760 + Gm26876 lincRNA lincRNA MGP_AJ_T0100550.1 MGP_AJ_G0038516.1 mouse_genomes_project 10 109569263 109569407 + Gm25117 snoRNA snoRNA MGP_AJ_T0006101.1 MGP_AJ_G0005107.1 mouse_genomes_project 10 62662570 62663412 - Gm28881 lincRNA lincRNA MGP_AJ_T0025032.1 MGP_AJ_G0017156.1 mouse_genomes_project 10 39179058 39225498 - MGP_AJ_P0025032 protein_coding protein_coding MGP_AJ_T0025167.1 MGP_AJ_G0017201.1 mouse_genomes_project 10 50032044 50044003 + MGP_AJ_P0025167 Nepn protein_coding protein_coding MGP_AJ_T0025168.1 MGP_AJ_G0017201.1 mouse_genomes_project 10 50034656 50047654 + MGP_AJ_P0025168 Nepn protein_coding protein_coding MGP_AJ_T0024588.1 MGP_AJ_G0017000.1 mouse_genomes_project 10 10502865 10504515 + MGP_AJ_P0024588 Fuca2 protein_coding protein_coding MGP_AJ_T0024589.1 MGP_AJ_G0017000.1 mouse_genomes_project 10 10502869 10510087 + MGP_AJ_P0024589 Fuca2 protein_coding protein_coding MGP_AJ_T0024590.1 MGP_AJ_G0017000.1 mouse_genomes_project 10 10504338 10519750 + MGP_AJ_P0024590 Fuca2 protein_coding protein_coding MGP_AJ_T0024591.1 MGP_AJ_G0017000.1 mouse_genomes_project 10 10504338 10523242 + MGP_AJ_P0024591 Fuca2 protein_coding protein_coding MGP_AJ_T0024592.1 MGP_AJ_G0017000.1 mouse_genomes_project 10 10504421 10517305 + Fuca2 protein_coding retained_intron MGP_AJ_T0024593.1 MGP_AJ_G0017000.1 mouse_genomes_project 10 10510243 10519705 + Fuca2 protein_coding processed_transcript MGP_AJ_T0026104.1 MGP_AJ_G0017449.1 mouse_genomes_project 10 77672054 77677357 + MGP_AJ_P0026104 Kiss1r protein_coding protein_coding MGP_AJ_T0100553.1 MGP_AJ_G0038519.1 mouse_genomes_project 10 118882716 118882776 + Gm24298 snoRNA snoRNA MGP_AJ_T0027564.1 MGP_AJ_G0017888.1 mouse_genomes_project 10 128077419 128081377 + MGP_AJ_P0027564 Olfr794 protein_coding protein_coding MGP_AJ_T0027565.1 MGP_AJ_G0017888.1 mouse_genomes_project 10 128080414 128081377 + MGP_AJ_P0027565 Olfr794 protein_coding protein_coding MGP_AJ_T0025259.1 MGP_AJ_G0017236.1 mouse_genomes_project 10 57072678 57073014 + MGP_AJ_P0025259 Gm10322 protein_coding protein_coding MGP_AJ_T0025247.1 MGP_AJ_G0017232.1 mouse_genomes_project 10 56781535 56832907 + MGP_AJ_P0025247 P4ha1 protein_coding protein_coding MGP_AJ_T0025248.1 MGP_AJ_G0017232.1 mouse_genomes_project 10 56781603 56831569 + MGP_AJ_P0025248 P4ha1 protein_coding protein_coding MGP_AJ_T0025249.1 MGP_AJ_G0017232.1 mouse_genomes_project 10 56781607 56831864 + MGP_AJ_P0025249 P4ha1 protein_coding protein_coding MGP_AJ_T0009613.1 MGP_AJ_G0007735.1 mouse_genomes_project 10 83314535 83314639 + Gm25281 miRNA miRNA MGP_AJ_T0026378.1 MGP_AJ_G0017519.1 mouse_genomes_project 10 78981020 78993391 + MGP_AJ_P0026378 Dapk3 protein_coding protein_coding MGP_AJ_T0025166.1 MGP_AJ_G0017200.1 mouse_genomes_project 10 50001331 50001418 + MGP_AJ_P0025166 Gm26741 protein_coding protein_coding MGP_AJ_T0026934.1 MGP_AJ_G0017657.1 mouse_genomes_project 10 95813158 95851642 + MGP_AJ_P0026934 Epyc protein_coding protein_coding MGP_AJ_T0026935.1 MGP_AJ_G0017657.1 mouse_genomes_project 10 95816179 95852196 + MGP_AJ_P0026935 Epyc protein_coding protein_coding MGP_AJ_T0027461.1 MGP_AJ_G0017838.1 mouse_genomes_project 10 126822317 126827610 - MGP_AJ_P0027461 Slc39a5 protein_coding protein_coding MGP_AJ_T0027462.1 MGP_AJ_G0017838.1 mouse_genomes_project 10 126822317 126826850 - MGP_AJ_P0027462 Slc39a5 protein_coding protein_coding MGP_AJ_T0003069.1 MGP_AJ_G0002862.1 mouse_genomes_project 10 84070538 84072427 - A230060F14Rik antisense antisense MGP_AJ_T0003070.1 MGP_AJ_G0002862.1 mouse_genomes_project 10 84071877 84072423 - A230060F14Rik antisense antisense MGP_AJ_T0006072.1 MGP_AJ_G0005083.1 mouse_genomes_project 10 8223001 8261140 - 4930432B10Rik lincRNA lincRNA MGP_AJ_T0006073.1 MGP_AJ_G0005083.1 mouse_genomes_project 10 8233141 8261362 - 4930432B10Rik lincRNA lincRNA MGP_AJ_T0027094.1 MGP_AJ_G0017718.1 mouse_genomes_project 10 114208422 114462333 + MGP_AJ_P0027094 Ptprr protein_coding protein_coding MGP_AJ_T0027095.1 MGP_AJ_G0017718.1 mouse_genomes_project 10 114208496 114304011 + Ptprr protein_coding processed_transcript MGP_AJ_T0027097.1 MGP_AJ_G0017718.1 mouse_genomes_project 10 114332869 114462338 + MGP_AJ_P0027097 Ptprr protein_coding protein_coding MGP_AJ_T0027098.1 MGP_AJ_G0017718.1 mouse_genomes_project 10 114383867 114424812 + Ptprr protein_coding processed_transcript MGP_AJ_T0026905.1 MGP_AJ_G0017643.1 mouse_genomes_project 10 92423644 92541553 + Tmcc3 protein_coding retained_intron MGP_AJ_T0026906.1 MGP_AJ_G0017643.1 mouse_genomes_project 10 92423712 92689122 + MGP_AJ_P0026906 Tmcc3 protein_coding protein_coding MGP_AJ_T0026907.1 MGP_AJ_G0017643.1 mouse_genomes_project 10 92423825 92483193 + Tmcc3 protein_coding processed_transcript MGP_AJ_T0026908.1 MGP_AJ_G0017643.1 mouse_genomes_project 10 92625625 92701859 + MGP_AJ_P0026908 Tmcc3 protein_coding protein_coding MGP_AJ_T0026909.1 MGP_AJ_G0017643.1 mouse_genomes_project 10 92655855 92689248 + MGP_AJ_P0026909 Tmcc3 protein_coding protein_coding MGP_AJ_T0026910.1 MGP_AJ_G0017643.1 mouse_genomes_project 10 92661266 92688993 + MGP_AJ_P0026910 Tmcc3 protein_coding protein_coding MGP_AJ_T0003007.1 MGP_AJ_G0002813.1 mouse_genomes_project 10 4759774 4760933 + B430219N15Rik antisense antisense MGP_AJ_T0003008.1 MGP_AJ_G0002813.1 mouse_genomes_project 10 4759911 4761001 + B430219N15Rik antisense antisense MGP_AJ_T0100499.1 MGP_AJ_G0038465.1 mouse_genomes_project 10 7646710 7646841 + Gm23601 snoRNA snoRNA MGP_AJ_T0025124.1 MGP_AJ_G0017186.1 mouse_genomes_project 10 43219297 43353284 + MGP_AJ_P0025124 Hace1 protein_coding protein_coding MGP_AJ_T0025125.1 MGP_AJ_G0017186.1 mouse_genomes_project 10 43219609 43248813 + MGP_AJ_P0025125 Hace1 protein_coding protein_coding MGP_AJ_T0025126.1 MGP_AJ_G0017186.1 mouse_genomes_project 10 43219748 43248767 + Hace1 protein_coding processed_transcript MGP_AJ_T0025127.1 MGP_AJ_G0017186.1 mouse_genomes_project 10 43231350 43291095 + Hace1 protein_coding processed_transcript MGP_AJ_T0025128.1 MGP_AJ_G0017186.1 mouse_genomes_project 10 43314573 43353098 + MGP_AJ_P0025128 Hace1 protein_coding protein_coding MGP_AJ_T0025129.1 MGP_AJ_G0017186.1 mouse_genomes_project 10 43315617 43353098 + MGP_AJ_P0025129 Hace1 protein_coding protein_coding MGP_AJ_T0025130.1 MGP_AJ_G0017186.1 mouse_genomes_project 10 43320176 43353210 + Hace1 protein_coding retained_intron MGP_AJ_T0027539.1 MGP_AJ_G0017869.1 mouse_genomes_project 10 127603253 127604192 - MGP_AJ_P0027539 Olfr768 protein_coding protein_coding MGP_AJ_T0027597.1 MGP_AJ_G0017911.1 mouse_genomes_project 10 128547848 128548909 + MGP_AJ_P0027597 Olfr820 protein_coding protein_coding MGP_AJ_T0000811.1 MGP_AJ_G0000747.1 mouse_genomes_project 10 15987345 15987635 - TEC TEC MGP_AJ_T0098527.1 MGP_AJ_G0036511.1 mouse_genomes_project 10 76015784 76015903 + n-R5s77 rRNA rRNA MGP_AJ_T0026573.1 MGP_AJ_G0017562.1 mouse_genomes_project 10 80891871 80893113 + MGP_AJ_P0026573 Gm4799 protein_coding protein_coding MGP_AJ_T0098380.1 MGP_AJ_G0036364.1 mouse_genomes_project 10 70687167 70687639 + pseudogene pseudogene MGP_AJ_T0100519.1 MGP_AJ_G0038485.1 mouse_genomes_project 10 37764919 37765132 + Rnu3a snoRNA snoRNA MGP_AJ_T0098891.1 MGP_AJ_G0036874.1 mouse_genomes_project 10 78377239 78379068 - Gm29093 sense_intronic sense_intronic MGP_AJ_T0026000.1 MGP_AJ_G0017422.1 mouse_genomes_project 10 77276281 77283594 - Plpp2 protein_coding processed_transcript MGP_AJ_T0026001.1 MGP_AJ_G0017422.1 mouse_genomes_project 10 77276983 77283527 - MGP_AJ_P0026001 Plpp2 protein_coding protein_coding MGP_AJ_T0026002.1 MGP_AJ_G0017422.1 mouse_genomes_project 10 77277338 77283624 - MGP_AJ_P0026002 Plpp2 protein_coding nonsense_mediated_decay MGP_AJ_T0006147.1 MGP_AJ_G0005133.1 mouse_genomes_project 10 93898327 93963092 + 4732465J04Rik lincRNA lincRNA MGP_AJ_T0006148.1 MGP_AJ_G0005133.1 mouse_genomes_project 10 93944159 93963497 + 4732465J04Rik lincRNA lincRNA MGP_AJ_T0025906.1 MGP_AJ_G0017386.1 mouse_genomes_project 10 75506972 75507953 - MGP_AJ_P0025906 Krtap10-4 protein_coding protein_coding MGP_AJ_T0024892.1 MGP_AJ_G0017108.1 mouse_genomes_project 10 31479309 31479375 - MGP_AJ_P0024892 Gm17567 protein_coding protein_coding MGP_AJ_T0027290.1 MGP_AJ_G0017781.1 mouse_genomes_project 10 125423077 125437294 + MGP_AJ_P0027290 Agap2 protein_coding protein_coding MGP_AJ_T0012412.1 MGP_AJ_G0010507.1 mouse_genomes_project 10 40956604 40957037 - processed_pseudogene processed_pseudogene MGP_AJ_T0025611.1 MGP_AJ_G0017314.1 mouse_genomes_project 10 67786039 67827288 + MGP_AJ_P0025611 Slc16a9 protein_coding protein_coding MGP_AJ_T0025612.1 MGP_AJ_G0017314.1 mouse_genomes_project 10 67808298 67825400 + Slc16a9 protein_coding retained_intron MGP_AJ_T0027568.1 MGP_AJ_G0017890.1 mouse_genomes_project 10 128157015 128157951 + MGP_AJ_P0027568 Olfr799 protein_coding protein_coding MGP_AJ_T0024983.1 MGP_AJ_G0017141.1 mouse_genomes_project 10 38078385 38113019 + MGP_AJ_P0024983 Slc22a16 protein_coding protein_coding MGP_AJ_T0024984.1 MGP_AJ_G0017141.1 mouse_genomes_project 10 38078662 38113015 + MGP_AJ_P0024984 Slc22a16 protein_coding protein_coding MGP_AJ_T0006167.1 MGP_AJ_G0005147.1 mouse_genomes_project 10 126932489 126937365 + A430046D13Rik lincRNA lincRNA MGP_AJ_T0003043.1 MGP_AJ_G0002841.1 mouse_genomes_project 10 67825554 67826273 - Gm7097 antisense antisense MGP_AJ_T0026815.1 MGP_AJ_G0017622.1 mouse_genomes_project 10 89163436 89185578 + MGP_AJ_P0026815 Ikbip protein_coding protein_coding MGP_AJ_T0026816.1 MGP_AJ_G0017622.1 mouse_genomes_project 10 89163553 89180954 + MGP_AJ_P0026816 Ikbip protein_coding protein_coding MGP_AJ_T0026817.1 MGP_AJ_G0017622.1 mouse_genomes_project 10 89163602 89175532 + Ikbip protein_coding processed_transcript MGP_AJ_T0026818.1 MGP_AJ_G0017622.1 mouse_genomes_project 10 89163616 89176115 + Ikbip protein_coding retained_intron MGP_AJ_T0026819.1 MGP_AJ_G0017622.1 mouse_genomes_project 10 89178268 89185066 + Ikbip protein_coding processed_transcript MGP_AJ_T0024412.1 MGP_AJ_G0016964.1 mouse_genomes_project 10 2719276 2725830 - MGP_AJ_P0024412 Fbxo5 protein_coding protein_coding MGP_AJ_T0024413.1 MGP_AJ_G0016964.1 mouse_genomes_project 10 2722439 2724840 - Fbxo5 protein_coding processed_transcript MGP_AJ_T0025998.1 MGP_AJ_G0017420.1 mouse_genomes_project 10 77031739 77074562 + MGP_AJ_P0025998 protein_coding protein_coding MGP_AJ_T0027304.1 MGP_AJ_G0017788.1 mouse_genomes_project 10 125571163 125608699 - MGP_AJ_P0027304 Kif5a protein_coding protein_coding MGP_AJ_T0024529.1 MGP_AJ_G0016987.1 mouse_genomes_project 10 7539596 7553635 - MGP_AJ_P0024529 Rab32 protein_coding protein_coding MGP_AJ_T0099297.1 MGP_AJ_G0037263.1 mouse_genomes_project 10 109208422 109208525 - Gm22101 snRNA snRNA MGP_AJ_T0100546.1 MGP_AJ_G0038512.1 mouse_genomes_project 10 105220814 105220899 + Gm24745 snoRNA snoRNA MGP_AJ_T0102213.1 MGP_AJ_G0039956.1 mouse_genomes_project 10 76226944 76227882 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0100543.1 MGP_AJ_G0038509.1 mouse_genomes_project 10 101298929 101299062 + Gm25376 snoRNA snoRNA MGP_AJ_T0027495.1 MGP_AJ_G0017848.1 mouse_genomes_project 10 127007847 127029986 - MGP_AJ_P0027495 Erbb3 protein_coding protein_coding MGP_AJ_T0025807.1 MGP_AJ_G0017358.1 mouse_genomes_project 10 73940872 74033806 - MGP_AJ_P0025807 Pcnt protein_coding protein_coding MGP_AJ_T0025808.1 MGP_AJ_G0017358.1 mouse_genomes_project 10 73940876 74033644 - MGP_AJ_P0025808 Pcnt protein_coding unknown_likely_coding MGP_AJ_T0027074.1 MGP_AJ_G0017710.1 mouse_genomes_project 10 113368117 113424053 - MGP_AJ_P0027074 Tbc1d15 protein_coding protein_coding MGP_AJ_T0009644.1 MGP_AJ_G0007766.1 mouse_genomes_project 10 126829685 126829761 + Gm25361 miRNA miRNA MGP_AJ_T0025826.1 MGP_AJ_G0017365.1 mouse_genomes_project 10 74190255 74218561 - MGP_AJ_P0025826 Col6a2 protein_coding protein_coding MGP_AJ_T0025827.1 MGP_AJ_G0017365.1 mouse_genomes_project 10 74192328 74218256 - MGP_AJ_P0025827 Col6a2 protein_coding protein_coding MGP_AJ_T0025828.1 MGP_AJ_G0017365.1 mouse_genomes_project 10 74195504 74218256 - Col6a2 protein_coding retained_intron MGP_AJ_T0100524.1 MGP_AJ_G0038490.1 mouse_genomes_project 10 49526084 49526212 + Gm23906 snoRNA snoRNA MGP_AJ_T0026894.1 MGP_AJ_G0017639.1 mouse_genomes_project 10 92149299 92258449 + MGP_AJ_P0026894 Fgd6 protein_coding protein_coding MGP_AJ_T0026895.1 MGP_AJ_G0017639.1 mouse_genomes_project 10 92185763 92202749 + Fgd6 protein_coding processed_transcript MGP_AJ_T0026896.1 MGP_AJ_G0017639.1 mouse_genomes_project 10 92246017 92252948 + Fgd6 protein_coding retained_intron MGP_AJ_T0003045.1 MGP_AJ_G0002843.1 mouse_genomes_project 10 73521255 73524215 - Gm867 antisense antisense MGP_AJ_T0024754.1 MGP_AJ_G0017050.1 mouse_genomes_project 10 21090494 21092479 - MGP_AJ_P0024754 Rps12 protein_coding protein_coding MGP_AJ_T0027554.1 MGP_AJ_G0017880.1 mouse_genomes_project 10 127851800 127856654 + MGP_AJ_P0027554 Olfr781 protein_coding protein_coding MGP_AJ_T0027555.1 MGP_AJ_G0017880.1 mouse_genomes_project 10 127855718 127856654 + MGP_AJ_P0027555 Olfr781 protein_coding protein_coding MGP_AJ_T0100531.1 MGP_AJ_G0038497.1 mouse_genomes_project 10 66662072 66662189 + Gm24172 snoRNA snoRNA MGP_AJ_T0027075.1 MGP_AJ_G0017711.1 mouse_genomes_project 10 113461582 113487203 - MGP_AJ_P0027075 Rab21 protein_coding protein_coding MGP_AJ_T0024547.1 MGP_AJ_G0016992.1 mouse_genomes_project 10 8321839 8434746 + MGP_AJ_P0024547 Epm2a protein_coding protein_coding MGP_AJ_T0024548.1 MGP_AJ_G0016992.1 mouse_genomes_project 10 8321888 8423856 + Epm2a protein_coding processed_transcript MGP_AJ_T0012453.1 MGP_AJ_G0010548.1 mouse_genomes_project 10 128668233 128670619 + processed_pseudogene processed_pseudogene MGP_AJ_T0009622.1 MGP_AJ_G0007744.1 mouse_genomes_project 10 95027038 95027127 - Gm24587 miRNA miRNA MGP_AJ_T0009623.1 MGP_AJ_G0007745.1 mouse_genomes_project 10 95593815 95593900 + Mir3966 miRNA miRNA MGP_AJ_T0009609.1 MGP_AJ_G0007731.1 mouse_genomes_project 10 79190925 79190991 + Mir6913 miRNA miRNA MGP_AJ_T0027012.1 MGP_AJ_G0017684.1 mouse_genomes_project 10 105362059 105511051 + MGP_AJ_P0027012 Lin7a protein_coding protein_coding MGP_AJ_T0027013.1 MGP_AJ_G0017684.1 mouse_genomes_project 10 105362059 105511051 + MGP_AJ_P0027013 Lin7a protein_coding protein_coding MGP_AJ_T0099288.1 MGP_AJ_G0037254.1 mouse_genomes_project 10 90602919 90602981 + Gm25884 snRNA snRNA MGP_AJ_T0027406.1 MGP_AJ_G0017821.1 mouse_genomes_project 10 126461240 126480301 + MGP_AJ_P0027406 Ptges3 protein_coding protein_coding MGP_AJ_T0027407.1 MGP_AJ_G0017821.1 mouse_genomes_project 10 126461297 126480008 + MGP_AJ_P0027407 Ptges3 protein_coding protein_coding MGP_AJ_T0027408.1 MGP_AJ_G0017821.1 mouse_genomes_project 10 126471431 126474535 + Ptges3 protein_coding retained_intron MGP_AJ_T0009616.1 MGP_AJ_G0007738.1 mouse_genomes_project 10 90240333 90240417 - Mir1251 miRNA miRNA MGP_AJ_T0027305.1 MGP_AJ_G0017789.1 mouse_genomes_project 10 125611620 125627318 + MGP_AJ_P0027305 Dctn2 protein_coding protein_coding MGP_AJ_T0024814.1 MGP_AJ_G0017077.1 mouse_genomes_project 10 23287349 23377900 - MGP_AJ_P0024814 Tmem200a protein_coding protein_coding MGP_AJ_T0003059.1 MGP_AJ_G0002855.1 mouse_genomes_project 10 78994993 78998824 + Atcayos antisense antisense MGP_AJ_T0003060.1 MGP_AJ_G0002855.1 mouse_genomes_project 10 78995067 79009538 + Atcayos antisense antisense MGP_AJ_T0003061.1 MGP_AJ_G0002855.1 mouse_genomes_project 10 78995075 79011250 + Atcayos antisense antisense MGP_AJ_T0025878.1 MGP_AJ_G0017376.1 mouse_genomes_project 10 75203445 75220675 + MGP_AJ_P0025878 Pttg1ip protein_coding protein_coding MGP_AJ_T0025879.1 MGP_AJ_G0017376.1 mouse_genomes_project 10 75203481 75209374 + Pttg1ip protein_coding retained_intron MGP_AJ_T0025880.1 MGP_AJ_G0017376.1 mouse_genomes_project 10 75203483 75215844 + MGP_AJ_P0025880 Pttg1ip protein_coding nonsense_mediated_decay MGP_AJ_T0025881.1 MGP_AJ_G0017376.1 mouse_genomes_project 10 75203528 75219278 + MGP_AJ_P0025881 Pttg1ip protein_coding protein_coding MGP_AJ_T0025882.1 MGP_AJ_G0017376.1 mouse_genomes_project 10 75203547 75214856 + MGP_AJ_P0025882 Pttg1ip protein_coding nonsense_mediated_decay MGP_AJ_T0025883.1 MGP_AJ_G0017376.1 mouse_genomes_project 10 75204134 75219212 + MGP_AJ_P0025883 Pttg1ip protein_coding protein_coding MGP_AJ_T0025884.1 MGP_AJ_G0017376.1 mouse_genomes_project 10 75205670 75214944 + MGP_AJ_P0025884 Pttg1ip protein_coding protein_coding MGP_AJ_T0025885.1 MGP_AJ_G0017376.1 mouse_genomes_project 10 75211338 75219175 + Pttg1ip protein_coding retained_intron MGP_AJ_T0025886.1 MGP_AJ_G0017376.1 mouse_genomes_project 10 75214281 75219073 + Pttg1ip protein_coding retained_intron MGP_AJ_T0003056.1 MGP_AJ_G0002853.1 mouse_genomes_project 10 78558400 78560564 - Gm17151 antisense antisense MGP_AJ_T0098893.1 MGP_AJ_G0036876.1 mouse_genomes_project 10 92519599 92521441 + Gm16155 sense_intronic sense_intronic MGP_AJ_T0027020.1 MGP_AJ_G0017690.1 mouse_genomes_project 10 106417109 106501404 + MGP_AJ_P0027020 Pawr protein_coding protein_coding MGP_AJ_T0100554.1 MGP_AJ_G0038520.1 mouse_genomes_project 10 125180812 125180939 - Gm24179 snoRNA snoRNA MGP_AJ_T0026030.1 MGP_AJ_G0017432.1 mouse_genomes_project 10 77457128 77464634 + MGP_AJ_P0026030 Bsg protein_coding protein_coding MGP_AJ_T0026031.1 MGP_AJ_G0017432.1 mouse_genomes_project 10 77457158 77464552 + MGP_AJ_P0026031 Bsg protein_coding protein_coding MGP_AJ_T0026032.1 MGP_AJ_G0017432.1 mouse_genomes_project 10 77457166 77463385 + Bsg protein_coding processed_transcript MGP_AJ_T0026033.1 MGP_AJ_G0017432.1 mouse_genomes_project 10 77462761 77464367 + Bsg protein_coding retained_intron MGP_AJ_T0003017.1 MGP_AJ_G0002821.1 mouse_genomes_project 10 22855227 22982760 + Gm29571 antisense antisense MGP_AJ_T0012432.1 MGP_AJ_G0010527.1 mouse_genomes_project 10 73556537 73556811 + processed_pseudogene processed_pseudogene MGP_AJ_T0006085.1 MGP_AJ_G0005091.1 mouse_genomes_project 10 18898195 18913476 - Platr6 lincRNA lincRNA MGP_AJ_T0024486.1 MGP_AJ_G0016976.1 mouse_genomes_project 10 4703669 4741507 + MGP_AJ_P0024486 Katna1 protein_coding protein_coding MGP_AJ_T0024487.1 MGP_AJ_G0016976.1 mouse_genomes_project 10 4703669 4741508 + MGP_AJ_P0024487 Katna1 protein_coding protein_coding MGP_AJ_T0024488.1 MGP_AJ_G0016976.1 mouse_genomes_project 10 4703677 4730167 + MGP_AJ_P0024488 Katna1 protein_coding nonsense_mediated_decay MGP_AJ_T0024489.1 MGP_AJ_G0016976.1 mouse_genomes_project 10 4726184 4738491 + Katna1 protein_coding retained_intron MGP_AJ_T0024490.1 MGP_AJ_G0016976.1 mouse_genomes_project 10 4738029 4741422 + MGP_AJ_P0024490 Katna1 protein_coding protein_coding MGP_AJ_T0024491.1 MGP_AJ_G0016976.1 mouse_genomes_project 10 4739486 4741506 + MGP_AJ_P0024491 Katna1 protein_coding protein_coding MGP_AJ_T0025995.1 MGP_AJ_G0017417.1 mouse_genomes_project 10 76816635 76850968 - MGP_AJ_P0025995 2610008E11Rik protein_coding protein_coding MGP_AJ_T0024971.1 MGP_AJ_G0017136.1 mouse_genomes_project 10 37538195 37644784 - MGP_AJ_P0024971 Slc16a10 protein_coding protein_coding MGP_AJ_T0026984.1 MGP_AJ_G0017674.1 mouse_genomes_project 10 100639146 100648156 - MGP_AJ_P0026984 Nts protein_coding protein_coding MGP_AJ_T0024770.1 MGP_AJ_G0017061.1 mouse_genomes_project 10 21291778 21293071 + MGP_AJ_P0024770 Taar7b protein_coding protein_coding MGP_AJ_T0024988.1 MGP_AJ_G0017145.1 mouse_genomes_project 10 38402365 38457909 + MGP_AJ_P0024988 Wasf1 protein_coding protein_coding MGP_AJ_T0024989.1 MGP_AJ_G0017145.1 mouse_genomes_project 10 38402717 38457910 + MGP_AJ_P0024989 Wasf1 protein_coding protein_coding MGP_AJ_T0009571.1 MGP_AJ_G0007693.1 mouse_genomes_project 10 4817484 4817578 + Mir5104 miRNA miRNA MGP_AJ_T0025507.1 MGP_AJ_G0017299.1 mouse_genomes_project 10 64607609 64704284 + Jmjd1c protein_coding retained_intron MGP_AJ_T0025508.1 MGP_AJ_G0017299.1 mouse_genomes_project 10 64607889 64669483 + Jmjd1c protein_coding retained_intron MGP_AJ_T0025509.1 MGP_AJ_G0017299.1 mouse_genomes_project 10 64607976 64737190 + MGP_AJ_P0025509 Jmjd1c protein_coding protein_coding MGP_AJ_T0025510.1 MGP_AJ_G0017299.1 mouse_genomes_project 10 64638718 64768529 + MGP_AJ_P0025510 Jmjd1c protein_coding protein_coding MGP_AJ_T0025511.1 MGP_AJ_G0017299.1 mouse_genomes_project 10 64698284 64728651 + Jmjd1c protein_coding retained_intron MGP_AJ_T0025512.1 MGP_AJ_G0017299.1 mouse_genomes_project 10 64698288 64704286 + Jmjd1c protein_coding retained_intron MGP_AJ_T0025513.1 MGP_AJ_G0017299.1 mouse_genomes_project 10 64730219 64730836 + Jmjd1c protein_coding retained_intron MGP_AJ_T0025514.1 MGP_AJ_G0017299.1 mouse_genomes_project 10 64750385 64764882 + MGP_AJ_P0025514 Jmjd1c protein_coding protein_coding MGP_AJ_T0025515.1 MGP_AJ_G0017299.1 mouse_genomes_project 10 64751159 64757656 + Jmjd1c protein_coding retained_intron MGP_AJ_T0024851.1 MGP_AJ_G0017088.1 mouse_genomes_project 10 26553110 26572585 + MGP_AJ_P0024851 9330159F19Rik protein_coding protein_coding MGP_AJ_T0011277.1 MGP_AJ_G0009399.1 mouse_genomes_project 10 90177934 90178127 - Gm27999 misc_RNA misc_RNA MGP_AJ_T0025354.1 MGP_AJ_G0017257.1 mouse_genomes_project 10 58934759 58943529 + MGP_AJ_P0025354 Nodal protein_coding protein_coding MGP_AJ_T0025634.1 MGP_AJ_G0017320.1 mouse_genomes_project 10 68791053 68821422 - MGP_AJ_P0025634 Ube2d1 protein_coding protein_coding MGP_AJ_T0025635.1 MGP_AJ_G0017320.1 mouse_genomes_project 10 68791732 68792962 - Ube2d1 protein_coding retained_intron MGP_AJ_T0025636.1 MGP_AJ_G0017320.1 mouse_genomes_project 10 68793778 68821378 - Ube2d1 protein_coding retained_intron MGP_AJ_T0102215.1 MGP_AJ_G0039958.1 mouse_genomes_project 10 104583494 104583960 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0026481.1 MGP_AJ_G0017543.1 mouse_genomes_project 10 79366315 79373445 + MGP_AJ_P0026481 Aes protein_coding protein_coding MGP_AJ_T0024660.1 MGP_AJ_G0017020.1 mouse_genomes_project 10 15911948 15923949 + MGP_AJ_P0024660 Perp protein_coding protein_coding MGP_AJ_T0027606.1 MGP_AJ_G0017919.1 mouse_genomes_project 10 128833789 128872989 + MGP_AJ_P0027606 Tespa1 protein_coding protein_coding MGP_AJ_T0027061.1 MGP_AJ_G0017702.1 mouse_genomes_project 10 110171288 110190935 + MGP_AJ_P0027061 Glipr1l1 protein_coding protein_coding MGP_AJ_T0011280.1 MGP_AJ_G0009402.1 mouse_genomes_project 10 90206375 90206578 - Gm27753 misc_RNA misc_RNA MGP_AJ_T0025531.1 MGP_AJ_G0017305.1 mouse_genomes_project 10 65500039 65564276 + MGP_AJ_P0025531 Rtkn2 protein_coding protein_coding MGP_AJ_T0025532.1 MGP_AJ_G0017305.1 mouse_genomes_project 10 65500067 65564272 + MGP_AJ_P0025532 Rtkn2 protein_coding protein_coding MGP_AJ_T0025533.1 MGP_AJ_G0017305.1 mouse_genomes_project 10 65500074 65580654 + MGP_AJ_P0025533 Rtkn2 protein_coding nonsense_mediated_decay MGP_AJ_T0025534.1 MGP_AJ_G0017305.1 mouse_genomes_project 10 65500167 65580657 + MGP_AJ_P0025534 Rtkn2 protein_coding nonsense_mediated_decay MGP_AJ_T0025535.1 MGP_AJ_G0017305.1 mouse_genomes_project 10 65500184 65562715 + MGP_AJ_P0025535 Rtkn2 protein_coding protein_coding MGP_AJ_T0025536.1 MGP_AJ_G0017305.1 mouse_genomes_project 10 65564375 65571991 + Rtkn2 protein_coding processed_transcript MGP_AJ_T0025131.1 MGP_AJ_G0017187.1 mouse_genomes_project 10 46706936 47400536 - MGP_AJ_P0025131 Grik2 protein_coding protein_coding MGP_AJ_T0025132.1 MGP_AJ_G0017187.1 mouse_genomes_project 10 46707319 46849694 - Grik2 protein_coding retained_intron MGP_AJ_T0025133.1 MGP_AJ_G0017187.1 mouse_genomes_project 10 46707319 47395030 - MGP_AJ_P0025133 Grik2 protein_coding protein_coding MGP_AJ_T0025134.1 MGP_AJ_G0017187.1 mouse_genomes_project 10 46708203 47395030 - MGP_AJ_P0025134 Grik2 protein_coding protein_coding MGP_AJ_T0025135.1 MGP_AJ_G0017187.1 mouse_genomes_project 10 46708465 47395180 - MGP_AJ_P0025135 Grik2 protein_coding protein_coding MGP_AJ_T0025136.1 MGP_AJ_G0017187.1 mouse_genomes_project 10 46708604 46711408 - Grik2 protein_coding retained_intron MGP_AJ_T0025137.1 MGP_AJ_G0017187.1 mouse_genomes_project 10 46712494 47395030 - MGP_AJ_P0025137 Grik2 protein_coding protein_coding MGP_AJ_T0025138.1 MGP_AJ_G0017187.1 mouse_genomes_project 10 47104346 47400524 - MGP_AJ_P0025138 Grik2 protein_coding protein_coding MGP_AJ_T0024691.1 MGP_AJ_G0017031.1 mouse_genomes_project 10 17365536 17367325 - MGP_AJ_P0024691 4933406P04Rik protein_coding protein_coding MGP_AJ_T0009630.1 MGP_AJ_G0007752.1 mouse_genomes_project 10 118723519 118723639 - Mir763 miRNA miRNA MGP_AJ_T0027541.1 MGP_AJ_G0017871.1 mouse_genomes_project 10 127646695 127651914 - MGP_AJ_P0027541 Olfr770 protein_coding protein_coding MGP_AJ_T0027542.1 MGP_AJ_G0017871.1 mouse_genomes_project 10 127646695 127647631 - MGP_AJ_P0027542 Olfr770 protein_coding protein_coding MGP_AJ_T0027543.1 MGP_AJ_G0017871.1 mouse_genomes_project 10 127647241 127652657 - MGP_AJ_P0027543 Olfr770 protein_coding protein_coding MGP_AJ_T0027544.1 MGP_AJ_G0017871.1 mouse_genomes_project 10 127647308 127652661 - MGP_AJ_P0027544 Olfr770 protein_coding protein_coding MGP_AJ_T0024689.1 MGP_AJ_G0017030.1 mouse_genomes_project 10 17199367 17331761 + MGP_AJ_P0024689 Map7 protein_coding protein_coding MGP_AJ_T0024690.1 MGP_AJ_G0017030.1 mouse_genomes_project 10 17199816 17334651 + MGP_AJ_P0024690 Map7 protein_coding protein_coding MGP_AJ_T0009626.1 MGP_AJ_G0007748.1 mouse_genomes_project 10 105566551 105566680 + Gm44403 miRNA miRNA MGP_AJ_T0027007.1 MGP_AJ_G0017682.1 mouse_genomes_project 10 104542844 105017921 + MGP_AJ_P0027007 Ppfia2 protein_coding protein_coding MGP_AJ_T0027008.1 MGP_AJ_G0017682.1 mouse_genomes_project 10 104542880 104859377 + MGP_AJ_P0027008 Ppfia2 protein_coding protein_coding MGP_AJ_T0026199.1 MGP_AJ_G0017468.1 mouse_genomes_project 10 78013363 78021036 + MGP_AJ_P0026199 Ndufs7 protein_coding protein_coding MGP_AJ_T0026200.1 MGP_AJ_G0017468.1 mouse_genomes_project 10 78013691 78017656 + Ndufs7 protein_coding retained_intron MGP_AJ_T0026201.1 MGP_AJ_G0017468.1 mouse_genomes_project 10 78013694 78021035 + MGP_AJ_P0026201 Ndufs7 protein_coding protein_coding MGP_AJ_T0026202.1 MGP_AJ_G0017468.1 mouse_genomes_project 10 78013702 78018184 + Ndufs7 protein_coding retained_intron MGP_AJ_T0026203.1 MGP_AJ_G0017468.1 mouse_genomes_project 10 78013727 78021037 + Ndufs7 protein_coding processed_transcript MGP_AJ_T0026204.1 MGP_AJ_G0017468.1 mouse_genomes_project 10 78017557 78019383 + Ndufs7 protein_coding retained_intron MGP_AJ_T0024995.1 MGP_AJ_G0017149.1 mouse_genomes_project 10 38974952 38989997 + MGP_AJ_P0024995 Zbtb24 protein_coding protein_coding MGP_AJ_T0003041.1 MGP_AJ_G0002839.1 mouse_genomes_project 10 60791756 60792842 - 1700120B22Rik antisense antisense MGP_AJ_T0026683.1 MGP_AJ_G0017598.1 mouse_genomes_project 10 85589760 85651941 + MGP_AJ_P0026683 Pah protein_coding protein_coding MGP_AJ_T0026684.1 MGP_AJ_G0017598.1 mouse_genomes_project 10 85589895 85651839 + MGP_AJ_P0026684 Pah protein_coding protein_coding MGP_AJ_T0026685.1 MGP_AJ_G0017598.1 mouse_genomes_project 10 85589992 85651660 + MGP_AJ_P0026685 Pah protein_coding protein_coding MGP_AJ_T0026686.1 MGP_AJ_G0017598.1 mouse_genomes_project 10 85614642 85638281 + MGP_AJ_P0026686 Pah protein_coding protein_coding MGP_AJ_T0009618.1 MGP_AJ_G0007740.1 mouse_genomes_project 10 91546226 91546282 + Mir7688 miRNA miRNA MGP_AJ_T0024783.1 MGP_AJ_G0017070.1 mouse_genomes_project 10 21962161 22035160 - MGP_AJ_P0024783 Enpp1 protein_coding protein_coding MGP_AJ_T0024784.1 MGP_AJ_G0017070.1 mouse_genomes_project 10 21965682 22035161 - MGP_AJ_P0024784 Enpp1 protein_coding nonsense_mediated_decay MGP_AJ_T0024785.1 MGP_AJ_G0017070.1 mouse_genomes_project 10 21966053 22034993 - MGP_AJ_P0024785 Enpp1 protein_coding protein_coding MGP_AJ_T0024786.1 MGP_AJ_G0017070.1 mouse_genomes_project 10 21972011 22034999 - Enpp1 protein_coding retained_intron MGP_AJ_T0024787.1 MGP_AJ_G0017070.1 mouse_genomes_project 10 21996151 22001958 - Enpp1 protein_coding retained_intron MGP_AJ_T0101701.1 MGP_AJ_G0039652.1 mouse_genomes_project 10 84988777 84992015 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0027556.1 MGP_AJ_G0017881.1 mouse_genomes_project 10 127937821 127938760 + MGP_AJ_P0027556 Gm44444 protein_coding protein_coding MGP_AJ_T0024422.1 MGP_AJ_G0016968.1 mouse_genomes_project 10 3694065 3939059 + MGP_AJ_P0024422 Oprm1 protein_coding nonsense_mediated_decay MGP_AJ_T0024423.1 MGP_AJ_G0016968.1 mouse_genomes_project 10 3694065 4001972 + MGP_AJ_P0024423 Oprm1 protein_coding protein_coding MGP_AJ_T0024424.1 MGP_AJ_G0016968.1 mouse_genomes_project 10 3694152 3796252 + MGP_AJ_P0024424 Oprm1 protein_coding protein_coding MGP_AJ_T0024425.1 MGP_AJ_G0016968.1 mouse_genomes_project 10 3694152 3795499 + MGP_AJ_P0024425 Oprm1 protein_coding protein_coding MGP_AJ_T0024426.1 MGP_AJ_G0016968.1 mouse_genomes_project 10 3694152 3795499 + MGP_AJ_P0024426 Oprm1 protein_coding protein_coding MGP_AJ_T0024427.1 MGP_AJ_G0016968.1 mouse_genomes_project 10 3694152 4002317 + MGP_AJ_P0024427 Oprm1 protein_coding protein_coding MGP_AJ_T0024428.1 MGP_AJ_G0016968.1 mouse_genomes_project 10 3694152 3773769 + MGP_AJ_P0024428 Oprm1 protein_coding nonsense_mediated_decay MGP_AJ_T0024429.1 MGP_AJ_G0016968.1 mouse_genomes_project 10 3694152 3795499 + MGP_AJ_P0024429 Oprm1 protein_coding nonsense_mediated_decay MGP_AJ_T0024430.1 MGP_AJ_G0016968.1 mouse_genomes_project 10 3694152 3795499 + MGP_AJ_P0024430 Oprm1 protein_coding nonsense_mediated_decay MGP_AJ_T0024431.1 MGP_AJ_G0016968.1 mouse_genomes_project 10 3724847 3795989 + MGP_AJ_P0024431 Oprm1 protein_coding protein_coding MGP_AJ_T0024432.1 MGP_AJ_G0016968.1 mouse_genomes_project 10 3724940 4001948 + MGP_AJ_P0024432 Oprm1 protein_coding nonsense_mediated_decay MGP_AJ_T0024433.1 MGP_AJ_G0016968.1 mouse_genomes_project 10 3725055 3939119 + MGP_AJ_P0024433 Oprm1 protein_coding nonsense_mediated_decay MGP_AJ_T0024434.1 MGP_AJ_G0016968.1 mouse_genomes_project 10 3725055 4001969 + MGP_AJ_P0024434 Oprm1 protein_coding nonsense_mediated_decay MGP_AJ_T0024435.1 MGP_AJ_G0016968.1 mouse_genomes_project 10 3725055 4002233 + MGP_AJ_P0024435 Oprm1 protein_coding nonsense_mediated_decay MGP_AJ_T0024436.1 MGP_AJ_G0016968.1 mouse_genomes_project 10 3725055 3939109 + MGP_AJ_P0024436 Oprm1 protein_coding protein_coding MGP_AJ_T0024437.1 MGP_AJ_G0016968.1 mouse_genomes_project 10 3725055 4002961 + MGP_AJ_P0024437 Oprm1 protein_coding protein_coding MGP_AJ_T0024438.1 MGP_AJ_G0016968.1 mouse_genomes_project 10 3725055 3775443 + MGP_AJ_P0024438 Oprm1 protein_coding protein_coding MGP_AJ_T0024439.1 MGP_AJ_G0016968.1 mouse_genomes_project 10 3725055 4002253 + MGP_AJ_P0024439 Oprm1 protein_coding nonsense_mediated_decay MGP_AJ_T0024440.1 MGP_AJ_G0016968.1 mouse_genomes_project 10 3725055 3786138 + MGP_AJ_P0024440 Oprm1 protein_coding nonsense_mediated_decay MGP_AJ_T0024441.1 MGP_AJ_G0016968.1 mouse_genomes_project 10 3725055 3786156 + MGP_AJ_P0024441 Oprm1 protein_coding protein_coding MGP_AJ_T0024442.1 MGP_AJ_G0016968.1 mouse_genomes_project 10 3725055 3784691 + MGP_AJ_P0024442 Oprm1 protein_coding protein_coding MGP_AJ_T0024443.1 MGP_AJ_G0016968.1 mouse_genomes_project 10 3725055 3786313 + MGP_AJ_P0024443 Oprm1 protein_coding protein_coding MGP_AJ_T0024444.1 MGP_AJ_G0016968.1 mouse_genomes_project 10 3725055 3777723 + MGP_AJ_P0024444 Oprm1 protein_coding protein_coding MGP_AJ_T0024445.1 MGP_AJ_G0016968.1 mouse_genomes_project 10 3725055 3783452 + MGP_AJ_P0024445 Oprm1 protein_coding protein_coding MGP_AJ_T0024446.1 MGP_AJ_G0016968.1 mouse_genomes_project 10 3725055 4001972 + MGP_AJ_P0024446 Oprm1 protein_coding protein_coding MGP_AJ_T0024447.1 MGP_AJ_G0016968.1 mouse_genomes_project 10 3725055 4001948 + MGP_AJ_P0024447 Oprm1 protein_coding nonsense_mediated_decay MGP_AJ_T0024448.1 MGP_AJ_G0016968.1 mouse_genomes_project 10 3725083 3784726 + MGP_AJ_P0024448 Oprm1 protein_coding protein_coding MGP_AJ_T0024449.1 MGP_AJ_G0016968.1 mouse_genomes_project 10 3725083 3777529 + MGP_AJ_P0024449 Oprm1 protein_coding protein_coding MGP_AJ_T0024450.1 MGP_AJ_G0016968.1 mouse_genomes_project 10 3725221 4002253 + Oprm1 protein_coding processed_transcript MGP_AJ_T0024451.1 MGP_AJ_G0016968.1 mouse_genomes_project 10 3725271 3773716 + Oprm1 protein_coding processed_transcript MGP_AJ_T0024452.1 MGP_AJ_G0016968.1 mouse_genomes_project 10 3725345 3795628 + Oprm1 protein_coding processed_transcript MGP_AJ_T0009614.1 MGP_AJ_G0007736.1 mouse_genomes_project 10 84787384 84787517 - Gm25745 miRNA miRNA MGP_AJ_T0011289.1 MGP_AJ_G0009411.1 mouse_genomes_project 10 122770217 122770476 + Gm23777 misc_RNA misc_RNA MGP_AJ_T0009597.1 MGP_AJ_G0007719.1 mouse_genomes_project 10 76112311 76112382 - Mir6907 miRNA miRNA MGP_AJ_T0026939.1 MGP_AJ_G0017661.1 mouse_genomes_project 10 97082490 97194161 + MGP_AJ_P0026939 Atp2b1 protein_coding unknown_likely_coding MGP_AJ_T0026940.1 MGP_AJ_G0017661.1 mouse_genomes_project 10 97082941 97194162 + MGP_AJ_P0026940 Atp2b1 protein_coding protein_coding MGP_AJ_T0098530.1 MGP_AJ_G0036514.1 mouse_genomes_project 10 92944783 92944910 - Gm24186 rRNA rRNA MGP_AJ_T0003057.1 MGP_AJ_G0002854.1 mouse_genomes_project 10 78819531 78820993 + Gm16099 antisense antisense MGP_AJ_T0003058.1 MGP_AJ_G0002854.1 mouse_genomes_project 10 78819803 78821287 + Gm16099 antisense antisense MGP_AJ_T0098378.1 MGP_AJ_G0036362.1 mouse_genomes_project 10 61569993 61570358 + pseudogene pseudogene MGP_AJ_T0027142.1 MGP_AJ_G0017736.1 mouse_genomes_project 10 115850640 115856569 + Cpm protein_coding processed_transcript MGP_AJ_T0027143.1 MGP_AJ_G0017736.1 mouse_genomes_project 10 115850640 115888064 + Cpm protein_coding retained_intron MGP_AJ_T0027144.1 MGP_AJ_G0017736.1 mouse_genomes_project 10 115850640 115907469 + MGP_AJ_P0027144 Cpm protein_coding protein_coding MGP_AJ_T0027145.1 MGP_AJ_G0017736.1 mouse_genomes_project 10 115895810 115905051 + Cpm protein_coding retained_intron MGP_AJ_T0027592.1 MGP_AJ_G0017907.1 mouse_genomes_project 10 128442263 128443202 - MGP_AJ_P0027592 Olfr816 protein_coding protein_coding MGP_AJ_T0099253.1 MGP_AJ_G0037219.1 mouse_genomes_project 10 28320052 28320159 - Gm24168 snRNA snRNA MGP_AJ_T0024549.1 MGP_AJ_G0016993.1 mouse_genomes_project 10 9330336 9509220 - MGP_AJ_P0024549 Utrn protein_coding unknown_likely_coding MGP_AJ_T0024550.1 MGP_AJ_G0016993.1 mouse_genomes_project 10 9330338 9853782 - MGP_AJ_P0024550 Utrn protein_coding protein_coding MGP_AJ_T0024551.1 MGP_AJ_G0016993.1 mouse_genomes_project 10 9583607 9860939 - MGP_AJ_P0024551 Utrn protein_coding unknown_likely_coding MGP_AJ_T0025214.1 MGP_AJ_G0017218.1 mouse_genomes_project 10 55504149 55512321 + MGP_AJ_P0025214 Smpdl3a protein_coding protein_coding MGP_AJ_T0025215.1 MGP_AJ_G0017218.1 mouse_genomes_project 10 55504188 55521553 + MGP_AJ_P0025215 Smpdl3a protein_coding protein_coding MGP_AJ_T0025216.1 MGP_AJ_G0017218.1 mouse_genomes_project 10 55504382 55517247 + Smpdl3a protein_coding processed_transcript MGP_AJ_T0024941.1 MGP_AJ_G0017128.1 mouse_genomes_project 10 36863129 37012009 + MGP_AJ_P0024941 Fyn protein_coding protein_coding MGP_AJ_T0024942.1 MGP_AJ_G0017128.1 mouse_genomes_project 10 36864038 37064556 + MGP_AJ_P0024942 Fyn protein_coding protein_coding MGP_AJ_T0024943.1 MGP_AJ_G0017128.1 mouse_genomes_project 10 36864077 37063598 + MGP_AJ_P0024943 Fyn protein_coding protein_coding MGP_AJ_T0024944.1 MGP_AJ_G0017128.1 mouse_genomes_project 10 36914816 37008200 + MGP_AJ_P0024944 Fyn protein_coding protein_coding MGP_AJ_T0024945.1 MGP_AJ_G0017128.1 mouse_genomes_project 10 36942318 37064549 + MGP_AJ_P0024945 Fyn protein_coding protein_coding MGP_AJ_T0024946.1 MGP_AJ_G0017128.1 mouse_genomes_project 10 36950647 37063530 + MGP_AJ_P0024946 Fyn protein_coding protein_coding MGP_AJ_T0024947.1 MGP_AJ_G0017128.1 mouse_genomes_project 10 36950757 37063530 + MGP_AJ_P0024947 Fyn protein_coding protein_coding MGP_AJ_T0024948.1 MGP_AJ_G0017128.1 mouse_genomes_project 10 37032458 37050599 + Fyn protein_coding processed_transcript MGP_AJ_T0026242.1 MGP_AJ_G0017477.1 mouse_genomes_project 10 78124312 78133443 + MGP_AJ_P0026242 Plk5 protein_coding protein_coding MGP_AJ_T0026243.1 MGP_AJ_G0017477.1 mouse_genomes_project 10 78124312 78133443 + MGP_AJ_P0026243 Plk5 protein_coding protein_coding MGP_AJ_T0026244.1 MGP_AJ_G0017477.1 mouse_genomes_project 10 78125830 78128379 + Plk5 protein_coding retained_intron MGP_AJ_T0026245.1 MGP_AJ_G0017477.1 mouse_genomes_project 10 78127121 78128637 + Plk5 protein_coding retained_intron MGP_AJ_T0024869.1 MGP_AJ_G0017097.1 mouse_genomes_project 10 28612140 28616481 + MGP_AJ_P0024869 Gm5422 protein_coding protein_coding MGP_AJ_T0027121.1 MGP_AJ_G0017724.1 mouse_genomes_project 10 115099149 115144342 - MGP_AJ_P0027121 Rab3ip protein_coding protein_coding MGP_AJ_T0027122.1 MGP_AJ_G0017724.1 mouse_genomes_project 10 115100401 115144360 - MGP_AJ_P0027122 Rab3ip protein_coding unknown_likely_coding MGP_AJ_T0012387.1 MGP_AJ_G0010482.1 mouse_genomes_project 10 7327060 7328273 + processed_pseudogene processed_pseudogene MGP_AJ_T0025783.1 MGP_AJ_G0017349.1 mouse_genomes_project 10 73519105 73521258 + MGP_AJ_P0025783 Chchd10 protein_coding protein_coding MGP_AJ_T0027577.1 MGP_AJ_G0017896.1 mouse_genomes_project 10 128216039 128216984 + MGP_AJ_P0027577 Olfr804 protein_coding protein_coding MGP_AJ_T0012408.1 MGP_AJ_G0010503.1 mouse_genomes_project 10 37253404 37254014 - processed_pseudogene processed_pseudogene MGP_AJ_T0027324.1 MGP_AJ_G0017795.1 mouse_genomes_project 10 125703997 125706356 - MGP_AJ_P0027324 Inhbe protein_coding protein_coding MGP_AJ_T0024902.1 MGP_AJ_G0017117.1 mouse_genomes_project 10 31793970 31797849 + MGP_AJ_P0024902 Tspyl4 protein_coding protein_coding MGP_AJ_T0027448.1 MGP_AJ_G0017829.1 mouse_genomes_project 10 126676034 126677805 + MGP_AJ_P0027448 Apon protein_coding protein_coding MGP_AJ_T0026955.1 MGP_AJ_G0017669.1 mouse_genomes_project 10 98596402 98640019 - MGP_AJ_P0026955 Tmtc3 protein_coding protein_coding MGP_AJ_T0026956.1 MGP_AJ_G0017669.1 mouse_genomes_project 10 98601037 98640016 - MGP_AJ_P0026956 Tmtc3 protein_coding protein_coding MGP_AJ_T0026957.1 MGP_AJ_G0017669.1 mouse_genomes_project 10 98628172 98640008 - Tmtc3 protein_coding retained_intron MGP_AJ_T0026958.1 MGP_AJ_G0017669.1 mouse_genomes_project 10 98629391 98639936 - MGP_AJ_P0026958 Tmtc3 protein_coding protein_coding MGP_AJ_T0026959.1 MGP_AJ_G0017669.1 mouse_genomes_project 10 98630727 98639995 - MGP_AJ_P0026959 Tmtc3 protein_coding protein_coding MGP_AJ_T0025713.1 MGP_AJ_G0017330.1 mouse_genomes_project 10 72880139 72897985 + MGP_AJ_P0025713 Adora2a protein_coding protein_coding MGP_AJ_T0027216.1 MGP_AJ_G0017756.1 mouse_genomes_project 10 119661468 119693970 + MGP_AJ_P0027216 Gns protein_coding protein_coding MGP_AJ_T0006086.1 MGP_AJ_G0005092.1 mouse_genomes_project 10 21431261 21438352 + Gm15137 lincRNA lincRNA MGP_AJ_T0025981.1 MGP_AJ_G0017408.1 mouse_genomes_project 10 76496385 76524310 + MGP_AJ_P0025981 Slc1a6 protein_coding protein_coding MGP_AJ_T0012441.1 MGP_AJ_G0010536.1 mouse_genomes_project 10 100621930 100622875 + processed_pseudogene processed_pseudogene MGP_AJ_T0027120.1 MGP_AJ_G0017723.1 mouse_genomes_project 10 114969377 115089602 - MGP_AJ_P0027120 Myrfl protein_coding protein_coding MGP_AJ_T0100549.1 MGP_AJ_G0038515.1 mouse_genomes_project 10 108960826 108960948 - Gm22186 snoRNA snoRNA MGP_AJ_T0009606.1 MGP_AJ_G0007728.1 mouse_genomes_project 10 78900197 78900257 - Mir5615-1 miRNA miRNA MGP_AJ_T0009607.1 MGP_AJ_G0007729.1 mouse_genomes_project 10 78900199 78900259 + Mir5615-2 miRNA miRNA MGP_AJ_T0099261.1 MGP_AJ_G0037227.1 mouse_genomes_project 10 44022549 44022656 + Gm25740 snRNA snRNA MGP_AJ_T0026304.1 MGP_AJ_G0017495.1 mouse_genomes_project 10 78546752 78587045 + MGP_AJ_P0026304 Dot1l protein_coding protein_coding MGP_AJ_T0026305.1 MGP_AJ_G0017495.1 mouse_genomes_project 10 78546754 78585971 + MGP_AJ_P0026305 Dot1l protein_coding nonsense_mediated_decay MGP_AJ_T0026306.1 MGP_AJ_G0017495.1 mouse_genomes_project 10 78547009 78558129 + Dot1l protein_coding retained_intron MGP_AJ_T0026307.1 MGP_AJ_G0017495.1 mouse_genomes_project 10 78569133 78585975 + MGP_AJ_P0026307 Dot1l protein_coding protein_coding MGP_AJ_T0026308.1 MGP_AJ_G0017495.1 mouse_genomes_project 10 78576729 78577987 + Dot1l protein_coding retained_intron MGP_AJ_T0026309.1 MGP_AJ_G0017495.1 mouse_genomes_project 10 78580628 78585931 + MGP_AJ_P0026309 Dot1l protein_coding nonsense_mediated_decay MGP_AJ_T0026310.1 MGP_AJ_G0017495.1 mouse_genomes_project 10 78583037 78585402 + MGP_AJ_P0026310 Dot1l protein_coding protein_coding MGP_AJ_T0099244.1 MGP_AJ_G0037210.1 mouse_genomes_project 10 7092918 7093082 + Gm25682 snRNA snRNA MGP_AJ_T0025077.1 MGP_AJ_G0017166.1 mouse_genomes_project 10 40429547 40534258 + MGP_AJ_P0025077 Scml4 protein_coding protein_coding MGP_AJ_T0025078.1 MGP_AJ_G0017166.1 mouse_genomes_project 10 40429772 40503793 + MGP_AJ_P0025078 Scml4 protein_coding protein_coding MGP_AJ_T0025079.1 MGP_AJ_G0017166.1 mouse_genomes_project 10 40429896 40507600 + MGP_AJ_P0025079 Scml4 protein_coding protein_coding MGP_AJ_T0025080.1 MGP_AJ_G0017166.1 mouse_genomes_project 10 40430022 40534256 + MGP_AJ_P0025080 Scml4 protein_coding protein_coding MGP_AJ_T0025081.1 MGP_AJ_G0017166.1 mouse_genomes_project 10 40434743 40503658 + MGP_AJ_P0025081 Scml4 protein_coding protein_coding MGP_AJ_T0025082.1 MGP_AJ_G0017166.1 mouse_genomes_project 10 40473648 40508378 + MGP_AJ_P0025082 Scml4 protein_coding protein_coding MGP_AJ_T0025083.1 MGP_AJ_G0017166.1 mouse_genomes_project 10 40507576 40532248 + Scml4 protein_coding retained_intron MGP_AJ_T0025084.1 MGP_AJ_G0017166.1 mouse_genomes_project 10 40508154 40521483 + Scml4 protein_coding retained_intron MGP_AJ_T0025085.1 MGP_AJ_G0017166.1 mouse_genomes_project 10 40513168 40532199 + Scml4 protein_coding processed_transcript MGP_AJ_T0025919.1 MGP_AJ_G0017390.1 mouse_genomes_project 10 75672580 75679491 + MGP_AJ_P0025919 1810043G02Rik protein_coding protein_coding MGP_AJ_T0025920.1 MGP_AJ_G0017390.1 mouse_genomes_project 10 75672710 75679312 + 1810043G02Rik protein_coding retained_intron MGP_AJ_T0025921.1 MGP_AJ_G0017390.1 mouse_genomes_project 10 75672727 75679491 + 1810043G02Rik protein_coding retained_intron MGP_AJ_T0025922.1 MGP_AJ_G0017390.1 mouse_genomes_project 10 75672729 75680962 + MGP_AJ_P0025922 1810043G02Rik protein_coding protein_coding MGP_AJ_T0025923.1 MGP_AJ_G0017390.1 mouse_genomes_project 10 75672737 75679493 + 1810043G02Rik protein_coding retained_intron MGP_AJ_T0025924.1 MGP_AJ_G0017390.1 mouse_genomes_project 10 75672749 75674579 + 1810043G02Rik protein_coding processed_transcript MGP_AJ_T0025925.1 MGP_AJ_G0017390.1 mouse_genomes_project 10 75674549 75678536 + 1810043G02Rik protein_coding processed_transcript MGP_AJ_T0025926.1 MGP_AJ_G0017390.1 mouse_genomes_project 10 75675814 75676947 + 1810043G02Rik protein_coding processed_transcript MGP_AJ_T0012444.1 MGP_AJ_G0010539.1 mouse_genomes_project 10 104285666 104286059 - processed_pseudogene processed_pseudogene MGP_AJ_T0027474.1 MGP_AJ_G0017841.1 mouse_genomes_project 10 126887501 126918764 + MGP_AJ_P0027474 Smarcc2 protein_coding protein_coding MGP_AJ_T0027475.1 MGP_AJ_G0017841.1 mouse_genomes_project 10 126887501 126918764 + MGP_AJ_P0027475 Smarcc2 protein_coding protein_coding MGP_AJ_T0027476.1 MGP_AJ_G0017841.1 mouse_genomes_project 10 126887501 126918764 + MGP_AJ_P0027476 Smarcc2 protein_coding protein_coding MGP_AJ_T0027421.1 MGP_AJ_G0017825.1 mouse_genomes_project 10 126614637 126630120 + MGP_AJ_P0027421 Gls2 protein_coding protein_coding MGP_AJ_T0027422.1 MGP_AJ_G0017825.1 mouse_genomes_project 10 126614815 126619485 + MGP_AJ_P0027422 Gls2 protein_coding protein_coding MGP_AJ_T0027423.1 MGP_AJ_G0017825.1 mouse_genomes_project 10 126614897 126630115 + MGP_AJ_P0027423 Gls2 protein_coding nonsense_mediated_decay MGP_AJ_T0027424.1 MGP_AJ_G0017825.1 mouse_genomes_project 10 126614900 126619865 + Gls2 protein_coding processed_transcript MGP_AJ_T0027425.1 MGP_AJ_G0017825.1 mouse_genomes_project 10 126614904 126630185 + MGP_AJ_P0027425 Gls2 protein_coding nonsense_mediated_decay MGP_AJ_T0027426.1 MGP_AJ_G0017825.1 mouse_genomes_project 10 126614926 126630115 + MGP_AJ_P0027426 Gls2 protein_coding nonsense_mediated_decay MGP_AJ_T0027427.1 MGP_AJ_G0017825.1 mouse_genomes_project 10 126614984 126620023 + Gls2 protein_coding retained_intron MGP_AJ_T0027428.1 MGP_AJ_G0017825.1 mouse_genomes_project 10 126623447 126624374 + Gls2 protein_coding retained_intron MGP_AJ_T0027429.1 MGP_AJ_G0017825.1 mouse_genomes_project 10 126623865 126627186 + Gls2 protein_coding processed_transcript MGP_AJ_T0027430.1 MGP_AJ_G0017825.1 mouse_genomes_project 10 126623946 126630123 + Gls2 protein_coding retained_intron MGP_AJ_T0027431.1 MGP_AJ_G0017825.1 mouse_genomes_project 10 126627107 126629911 + MGP_AJ_P0027431 Gls2 protein_coding protein_coding MGP_AJ_T0025769.1 MGP_AJ_G0017344.1 mouse_genomes_project 10 73411487 73414524 - MGP_AJ_P0025769 Gstt2 protein_coding protein_coding MGP_AJ_T0099250.1 MGP_AJ_G0037216.1 mouse_genomes_project 10 22215449 22215556 + Gm23410 snRNA snRNA MGP_AJ_T0027497.1 MGP_AJ_G0017850.1 mouse_genomes_project 10 127079081 127094173 - MGP_AJ_P0027497 Ikzf4 protein_coding protein_coding MGP_AJ_T0027498.1 MGP_AJ_G0017850.1 mouse_genomes_project 10 127080615 127094008 - MGP_AJ_P0027498 Ikzf4 protein_coding protein_coding MGP_AJ_T0027499.1 MGP_AJ_G0017850.1 mouse_genomes_project 10 127080668 127094026 - MGP_AJ_P0027499 Ikzf4 protein_coding nonsense_mediated_decay MGP_AJ_T0027500.1 MGP_AJ_G0017850.1 mouse_genomes_project 10 127081913 127092830 - MGP_AJ_P0027500 Ikzf4 protein_coding protein_coding MGP_AJ_T0027501.1 MGP_AJ_G0017850.1 mouse_genomes_project 10 127088442 127093978 - MGP_AJ_P0027501 Ikzf4 protein_coding nonsense_mediated_decay MGP_AJ_T0027502.1 MGP_AJ_G0017850.1 mouse_genomes_project 10 127089358 127093972 - MGP_AJ_P0027502 Ikzf4 protein_coding nonsense_mediated_decay MGP_AJ_T0027503.1 MGP_AJ_G0017850.1 mouse_genomes_project 10 127089384 127093989 - MGP_AJ_P0027503 Ikzf4 protein_coding nonsense_mediated_decay MGP_AJ_T0027504.1 MGP_AJ_G0017850.1 mouse_genomes_project 10 127092619 127094008 - Ikzf4 protein_coding processed_transcript MGP_AJ_T0027217.1 MGP_AJ_G0017757.1 mouse_genomes_project 10 119705288 119770766 - MGP_AJ_P0027217 Rassf3 protein_coding protein_coding MGP_AJ_T0102212.1 MGP_AJ_G0039955.1 mouse_genomes_project 10 75536415 75550353 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0025987.1 MGP_AJ_G0017413.1 mouse_genomes_project 10 76712937 76720360 + MGP_AJ_P0025987 Olfr1353 protein_coding protein_coding MGP_AJ_T0025988.1 MGP_AJ_G0017413.1 mouse_genomes_project 10 76712951 76719682 + MGP_AJ_P0025988 Olfr1353 protein_coding protein_coding MGP_AJ_T0025989.1 MGP_AJ_G0017413.1 mouse_genomes_project 10 76719345 76720360 + MGP_AJ_P0025989 Olfr1353 protein_coding protein_coding MGP_AJ_T0003078.1 MGP_AJ_G0002869.1 mouse_genomes_project 10 86504419 86510071 - Gm16235 antisense antisense MGP_AJ_T0003079.1 MGP_AJ_G0002869.1 mouse_genomes_project 10 86505337 86506118 - Gm16235 antisense antisense MGP_AJ_T0025364.1 MGP_AJ_G0017264.1 mouse_genomes_project 10 59223935 59231198 + MGP_AJ_P0025364 Tysnd1 protein_coding protein_coding MGP_AJ_T0024773.1 MGP_AJ_G0017064.1 mouse_genomes_project 10 21344461 21345638 + MGP_AJ_P0024773 Taar7f protein_coding protein_coding MGP_AJ_T0025260.1 MGP_AJ_G0017237.1 mouse_genomes_project 10 57159055 57319622 + MGP_AJ_P0025260 Micu1 protein_coding protein_coding MGP_AJ_T0025261.1 MGP_AJ_G0017237.1 mouse_genomes_project 10 57159141 57204914 + Micu1 protein_coding retained_intron MGP_AJ_T0025262.1 MGP_AJ_G0017237.1 mouse_genomes_project 10 57159177 57319620 + MGP_AJ_P0025262 Micu1 protein_coding protein_coding MGP_AJ_T0025263.1 MGP_AJ_G0017237.1 mouse_genomes_project 10 57159196 57319620 + MGP_AJ_P0025263 Micu1 protein_coding protein_coding MGP_AJ_T0025264.1 MGP_AJ_G0017237.1 mouse_genomes_project 10 57159206 57319613 + MGP_AJ_P0025264 Micu1 protein_coding protein_coding MGP_AJ_T0025265.1 MGP_AJ_G0017237.1 mouse_genomes_project 10 57159227 57248911 + MGP_AJ_P0025265 Micu1 protein_coding protein_coding MGP_AJ_T0025266.1 MGP_AJ_G0017237.1 mouse_genomes_project 10 57159236 57211723 + Micu1 protein_coding retained_intron MGP_AJ_T0025267.1 MGP_AJ_G0017237.1 mouse_genomes_project 10 57200101 57200776 + Micu1 protein_coding processed_transcript MGP_AJ_T0025268.1 MGP_AJ_G0017237.1 mouse_genomes_project 10 57200791 57217192 + MGP_AJ_P0025268 Micu1 protein_coding protein_coding MGP_AJ_T0025269.1 MGP_AJ_G0017237.1 mouse_genomes_project 10 57222430 57249009 + Micu1 protein_coding processed_transcript MGP_AJ_T0025271.1 MGP_AJ_G0017237.1 mouse_genomes_project 10 57287249 57301053 + Micu1 protein_coding retained_intron MGP_AJ_T0025272.1 MGP_AJ_G0017237.1 mouse_genomes_project 10 57316798 57318893 + Micu1 protein_coding retained_intron MGP_AJ_T0026554.1 MGP_AJ_G0017558.1 mouse_genomes_project 10 80583970 80626724 - MGP_AJ_P0026554 Glt8d2 protein_coding protein_coding MGP_AJ_T0026555.1 MGP_AJ_G0017558.1 mouse_genomes_project 10 80584843 80587005 - Glt8d2 protein_coding retained_intron MGP_AJ_T0026556.1 MGP_AJ_G0017558.1 mouse_genomes_project 10 80585096 80594151 - MGP_AJ_P0026556 Glt8d2 protein_coding protein_coding MGP_AJ_T0026557.1 MGP_AJ_G0017558.1 mouse_genomes_project 10 80586333 80626691 - MGP_AJ_P0026557 Glt8d2 protein_coding protein_coding MGP_AJ_T0026558.1 MGP_AJ_G0017558.1 mouse_genomes_project 10 80588585 80626691 - MGP_AJ_P0026558 Glt8d2 protein_coding nonsense_mediated_decay MGP_AJ_T0026559.1 MGP_AJ_G0017558.1 mouse_genomes_project 10 80599243 80605072 - MGP_AJ_P0026559 Glt8d2 protein_coding protein_coding MGP_AJ_T0026560.1 MGP_AJ_G0017558.1 mouse_genomes_project 10 80603858 80626703 - Glt8d2 protein_coding retained_intron MGP_AJ_T0011271.1 MGP_AJ_G0009393.1 mouse_genomes_project 10 48470555 48470845 - Gm23883 misc_RNA misc_RNA MGP_AJ_T0102222.1 MGP_AJ_G0039965.1 mouse_genomes_project 10 128131507 128131922 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0027434.1 MGP_AJ_G0017828.1 mouse_genomes_project 10 126652725 126674836 + Timeless protein_coding retained_intron MGP_AJ_T0027435.1 MGP_AJ_G0017828.1 mouse_genomes_project 10 126652734 126674756 + MGP_AJ_P0027435 Timeless protein_coding protein_coding MGP_AJ_T0027436.1 MGP_AJ_G0017828.1 mouse_genomes_project 10 126652736 126668013 + MGP_AJ_P0027436 Timeless protein_coding protein_coding MGP_AJ_T0027437.1 MGP_AJ_G0017828.1 mouse_genomes_project 10 126652760 126663579 + MGP_AJ_P0027437 Timeless protein_coding protein_coding MGP_AJ_T0027438.1 MGP_AJ_G0017828.1 mouse_genomes_project 10 126652779 126674845 + MGP_AJ_P0027438 Timeless protein_coding protein_coding MGP_AJ_T0027439.1 MGP_AJ_G0017828.1 mouse_genomes_project 10 126661804 126674818 + MGP_AJ_P0027439 Timeless protein_coding unknown_likely_coding MGP_AJ_T0027440.1 MGP_AJ_G0017828.1 mouse_genomes_project 10 126662304 126663519 + Timeless protein_coding retained_intron MGP_AJ_T0027441.1 MGP_AJ_G0017828.1 mouse_genomes_project 10 126664242 126664914 + Timeless protein_coding retained_intron MGP_AJ_T0027442.1 MGP_AJ_G0017828.1 mouse_genomes_project 10 126664311 126665832 + Timeless protein_coding processed_transcript MGP_AJ_T0027443.1 MGP_AJ_G0017828.1 mouse_genomes_project 10 126664532 126665599 + Timeless protein_coding retained_intron MGP_AJ_T0027444.1 MGP_AJ_G0017828.1 mouse_genomes_project 10 126669183 126669951 + Timeless protein_coding retained_intron MGP_AJ_T0027445.1 MGP_AJ_G0017828.1 mouse_genomes_project 10 126669238 126674843 + Timeless protein_coding processed_transcript MGP_AJ_T0027446.1 MGP_AJ_G0017828.1 mouse_genomes_project 10 126671116 126671764 + Timeless protein_coding retained_intron MGP_AJ_T0027447.1 MGP_AJ_G0017828.1 mouse_genomes_project 10 126671522 126672276 + Timeless protein_coding retained_intron MGP_AJ_T0098531.1 MGP_AJ_G0036515.1 mouse_genomes_project 10 103914978 103915089 - n-R5s80 rRNA rRNA MGP_AJ_T0025820.1 MGP_AJ_G0017363.1 mouse_genomes_project 10 74156683 74164365 + MGP_AJ_P0025820 Spatc1l protein_coding protein_coding MGP_AJ_T0025821.1 MGP_AJ_G0017363.1 mouse_genomes_project 10 74156720 74164194 + MGP_AJ_P0025821 Spatc1l protein_coding protein_coding MGP_AJ_T0011275.1 MGP_AJ_G0009397.1 mouse_genomes_project 10 76074646 76074954 - Gm22514 misc_RNA misc_RNA MGP_AJ_T0024996.1 MGP_AJ_G0017150.1 mouse_genomes_project 10 39000660 39011379 + MGP_AJ_P0024996 Mical1 protein_coding protein_coding MGP_AJ_T0024997.1 MGP_AJ_G0017150.1 mouse_genomes_project 10 39000660 39011377 + MGP_AJ_P0024997 Mical1 protein_coding protein_coding MGP_AJ_T0024998.1 MGP_AJ_G0017150.1 mouse_genomes_project 10 39000682 39009572 + Mical1 protein_coding retained_intron MGP_AJ_T0024999.1 MGP_AJ_G0017150.1 mouse_genomes_project 10 39000714 39011379 + MGP_AJ_P0024999 Mical1 protein_coding protein_coding MGP_AJ_T0025000.1 MGP_AJ_G0017150.1 mouse_genomes_project 10 39000723 39011379 + MGP_AJ_P0025000 Mical1 protein_coding nonsense_mediated_decay MGP_AJ_T0025001.1 MGP_AJ_G0017150.1 mouse_genomes_project 10 39001425 39002532 + MGP_AJ_P0025001 Mical1 protein_coding protein_coding MGP_AJ_T0025002.1 MGP_AJ_G0017150.1 mouse_genomes_project 10 39002824 39005512 + Mical1 protein_coding retained_intron MGP_AJ_T0025003.1 MGP_AJ_G0017150.1 mouse_genomes_project 10 39004334 39005505 + Mical1 protein_coding retained_intron MGP_AJ_T0025004.1 MGP_AJ_G0017150.1 mouse_genomes_project 10 39006053 39007063 + Mical1 protein_coding retained_intron MGP_AJ_T0025005.1 MGP_AJ_G0017150.1 mouse_genomes_project 10 39008420 39009418 + Mical1 protein_coding retained_intron MGP_AJ_T0025007.1 MGP_AJ_G0017150.1 mouse_genomes_project 10 39010457 39011067 + Mical1 protein_coding retained_intron MGP_AJ_T0025008.1 MGP_AJ_G0017150.1 mouse_genomes_project 10 39010718 39011377 + Mical1 protein_coding retained_intron MGP_AJ_T0027514.1 MGP_AJ_G0017857.1 mouse_genomes_project 10 127244423 127255894 + MGP_AJ_P0027514 Mmp19 protein_coding protein_coding MGP_AJ_T0027595.1 MGP_AJ_G0017909.1 mouse_genomes_project 10 128494978 128497783 - MGP_AJ_P0027595 protein_coding protein_coding MGP_AJ_T0024920.1 MGP_AJ_G0017123.1 mouse_genomes_project 10 36320867 36322106 - MGP_AJ_P0024920 Rfpl4b protein_coding protein_coding MGP_AJ_T0026565.1 MGP_AJ_G0017560.1 mouse_genomes_project 10 80684386 80699838 - MGP_AJ_P0026565 Nfyb protein_coding protein_coding MGP_AJ_T0026566.1 MGP_AJ_G0017560.1 mouse_genomes_project 10 80684978 80699795 - Nfyb protein_coding retained_intron MGP_AJ_T0026567.1 MGP_AJ_G0017560.1 mouse_genomes_project 10 80686167 80687351 - Nfyb protein_coding retained_intron MGP_AJ_T0026568.1 MGP_AJ_G0017560.1 mouse_genomes_project 10 80686857 80688240 - Nfyb protein_coding retained_intron MGP_AJ_T0026569.1 MGP_AJ_G0017560.1 mouse_genomes_project 10 80688105 80699352 - Nfyb protein_coding processed_transcript MGP_AJ_T0026570.1 MGP_AJ_G0017560.1 mouse_genomes_project 10 80688207 80699335 - MGP_AJ_P0026570 Nfyb protein_coding protein_coding MGP_AJ_T0026571.1 MGP_AJ_G0017560.1 mouse_genomes_project 10 80690758 80692999 - Nfyb protein_coding retained_intron MGP_AJ_T0024881.1 MGP_AJ_G0017102.1 mouse_genomes_project 10 30437747 30837066 + MGP_AJ_P0024881 Trdn protein_coding unknown_likely_coding MGP_AJ_T0024882.1 MGP_AJ_G0017102.1 mouse_genomes_project 10 30438175 30839257 + MGP_AJ_P0024882 Trdn protein_coding protein_coding MGP_AJ_T0025218.1 MGP_AJ_G0017220.1 mouse_genomes_project 10 55662483 55668258 - MGP_AJ_P0025218 protein_coding protein_coding MGP_AJ_T0025169.1 MGP_AJ_G0017202.1 mouse_genomes_project 10 50060478 50083176 + MGP_AJ_P0025169 Nus1 protein_coding protein_coding MGP_AJ_T0025170.1 MGP_AJ_G0017202.1 mouse_genomes_project 10 50071862 50076304 + MGP_AJ_P0025170 Nus1 protein_coding protein_coding MGP_AJ_T0025064.1 MGP_AJ_G0017163.1 mouse_genomes_project 10 40121328 40126935 - MGP_AJ_P0025064 Nr2e1 protein_coding protein_coding MGP_AJ_T0025065.1 MGP_AJ_G0017163.1 mouse_genomes_project 10 40121420 40141125 - MGP_AJ_P0025065 Nr2e1 protein_coding protein_coding MGP_AJ_T0025066.1 MGP_AJ_G0017163.1 mouse_genomes_project 10 40129590 40138480 - MGP_AJ_P0025066 Nr2e1 protein_coding protein_coding MGP_AJ_T0027306.1 MGP_AJ_G0017790.1 mouse_genomes_project 10 125627314 125634249 - MGP_AJ_P0027306 Mbd6 protein_coding protein_coding MGP_AJ_T0027307.1 MGP_AJ_G0017790.1 mouse_genomes_project 10 125627314 125634377 - MGP_AJ_P0027307 Mbd6 protein_coding protein_coding MGP_AJ_T0027308.1 MGP_AJ_G0017790.1 mouse_genomes_project 10 125627314 125631259 - MGP_AJ_P0027308 Mbd6 protein_coding nonsense_mediated_decay MGP_AJ_T0027309.1 MGP_AJ_G0017790.1 mouse_genomes_project 10 125627314 125629027 - MGP_AJ_P0027309 Mbd6 protein_coding nonsense_mediated_decay MGP_AJ_T0027310.1 MGP_AJ_G0017790.1 mouse_genomes_project 10 125628034 125629717 - MGP_AJ_P0027310 Mbd6 protein_coding protein_coding MGP_AJ_T0027311.1 MGP_AJ_G0017790.1 mouse_genomes_project 10 125628884 125629730 - MGP_AJ_P0027311 Mbd6 protein_coding protein_coding MGP_AJ_T0027312.1 MGP_AJ_G0017790.1 mouse_genomes_project 10 125631926 125634212 - MGP_AJ_P0027312 Mbd6 protein_coding protein_coding MGP_AJ_T0024979.1 MGP_AJ_G0017139.1 mouse_genomes_project 10 37796068 37808640 - MGP_AJ_P0024979 Amd1 protein_coding unknown_likely_coding MGP_AJ_T0024980.1 MGP_AJ_G0017139.1 mouse_genomes_project 10 37796077 37808640 - MGP_AJ_P0024980 Amd1 protein_coding unknown_likely_coding MGP_AJ_T0026541.1 MGP_AJ_G0017555.1 mouse_genomes_project 10 80353335 80359416 - MGP_AJ_P0026541 Gm1553 protein_coding protein_coding MGP_AJ_T0009588.1 MGP_AJ_G0007710.1 mouse_genomes_project 10 58457085 58457207 + Mir466j miRNA miRNA MGP_AJ_T0026700.1 MGP_AJ_G0017602.1 mouse_genomes_project 10 86207200 86240167 + MGP_AJ_P0026700 Nup37 protein_coding protein_coding MGP_AJ_T0026701.1 MGP_AJ_G0017602.1 mouse_genomes_project 10 86207279 86240167 + MGP_AJ_P0026701 Nup37 protein_coding protein_coding MGP_AJ_T0026114.1 MGP_AJ_G0017453.1 mouse_genomes_project 10 77731134 77734960 - Tmem259 protein_coding retained_intron MGP_AJ_T0026115.1 MGP_AJ_G0017453.1 mouse_genomes_project 10 77732076 77735127 - Tmem259 protein_coding retained_intron MGP_AJ_T0026116.1 MGP_AJ_G0017453.1 mouse_genomes_project 10 77733304 77740479 - MGP_AJ_P0026116 Tmem259 protein_coding protein_coding MGP_AJ_T0026117.1 MGP_AJ_G0017453.1 mouse_genomes_project 10 77733544 77740189 - MGP_AJ_P0026117 Tmem259 protein_coding protein_coding MGP_AJ_T0026118.1 MGP_AJ_G0017453.1 mouse_genomes_project 10 77734149 77734963 - Tmem259 protein_coding retained_intron MGP_AJ_T0024990.1 MGP_AJ_G0017146.1 mouse_genomes_project 10 38601627 38603924 - MGP_AJ_P0024990 Gpr6 protein_coding protein_coding MGP_AJ_T0099245.1 MGP_AJ_G0037211.1 mouse_genomes_project 10 9311057 9311222 + Gm23680 snRNA snRNA MGP_AJ_T0026348.1 MGP_AJ_G0017512.1 mouse_genomes_project 10 78865856 78878381 + MGP_AJ_P0026348 Thop1 protein_coding protein_coding MGP_AJ_T0026349.1 MGP_AJ_G0017512.1 mouse_genomes_project 10 78865948 78870699 + Thop1 protein_coding retained_intron MGP_AJ_T0026350.1 MGP_AJ_G0017512.1 mouse_genomes_project 10 78865980 78874426 + Thop1 protein_coding processed_transcript MGP_AJ_T0026351.1 MGP_AJ_G0017512.1 mouse_genomes_project 10 78869100 78874577 + Thop1 protein_coding retained_intron MGP_AJ_T0026352.1 MGP_AJ_G0017512.1 mouse_genomes_project 10 78874689 78875901 + Thop1 protein_coding retained_intron MGP_AJ_T0026303.1 MGP_AJ_G0017494.1 mouse_genomes_project 10 78497198 78533087 - MGP_AJ_P0026303 Ap3d1 protein_coding protein_coding MGP_AJ_T0026702.1 MGP_AJ_G0017603.1 mouse_genomes_project 10 86260064 86305796 + MGP_AJ_P0026702 Ccdc53 protein_coding protein_coding MGP_AJ_T0026703.1 MGP_AJ_G0017603.1 mouse_genomes_project 10 86260117 86275557 + MGP_AJ_P0026703 Ccdc53 protein_coding nonsense_mediated_decay MGP_AJ_T0026704.1 MGP_AJ_G0017603.1 mouse_genomes_project 10 86260123 86305644 + MGP_AJ_P0026704 Ccdc53 protein_coding protein_coding MGP_AJ_T0026705.1 MGP_AJ_G0017603.1 mouse_genomes_project 10 86260142 86284999 + MGP_AJ_P0026705 Ccdc53 protein_coding protein_coding MGP_AJ_T0026706.1 MGP_AJ_G0017603.1 mouse_genomes_project 10 86260155 86275259 + Ccdc53 protein_coding retained_intron MGP_AJ_T0026707.1 MGP_AJ_G0017603.1 mouse_genomes_project 10 86260234 86284778 + MGP_AJ_P0026707 Ccdc53 protein_coding protein_coding MGP_AJ_T0026708.1 MGP_AJ_G0017603.1 mouse_genomes_project 10 86263981 86294249 + Ccdc53 protein_coding processed_transcript MGP_AJ_T0026709.1 MGP_AJ_G0017603.1 mouse_genomes_project 10 86294891 86305645 + Ccdc53 protein_coding processed_transcript MGP_AJ_T0027091.1 MGP_AJ_G0017717.1 mouse_genomes_project 10 114001935 114035729 + MGP_AJ_P0027091 Tspan8 protein_coding protein_coding MGP_AJ_T0027092.1 MGP_AJ_G0017717.1 mouse_genomes_project 10 114001935 114035729 + MGP_AJ_P0027092 Tspan8 protein_coding protein_coding MGP_AJ_T0027093.1 MGP_AJ_G0017717.1 mouse_genomes_project 10 114001935 114035729 + MGP_AJ_P0027093 Tspan8 protein_coding protein_coding MGP_AJ_T0026417.1 MGP_AJ_G0017530.1 mouse_genomes_project 10 79141309 79147115 - MGP_AJ_P0026417 Gipc3 protein_coding protein_coding MGP_AJ_T0027322.1 MGP_AJ_G0017793.1 mouse_genomes_project 10 125678058 125684264 + MGP_AJ_P0027322 Arhgap9 protein_coding protein_coding MGP_AJ_T0012388.1 MGP_AJ_G0010483.1 mouse_genomes_project 10 8370141 8370870 - processed_pseudogene processed_pseudogene MGP_AJ_T0011279.1 MGP_AJ_G0009401.1 mouse_genomes_project 10 90204325 90204588 - Gm27588 misc_RNA misc_RNA MGP_AJ_T0024613.1 MGP_AJ_G0017005.1 mouse_genomes_project 10 11411328 11552083 - MGP_AJ_P0024613 Adgrg6 protein_coding protein_coding MGP_AJ_T0024614.1 MGP_AJ_G0017005.1 mouse_genomes_project 10 11416640 11552060 - MGP_AJ_P0024614 Adgrg6 protein_coding unknown_likely_coding MGP_AJ_T0024900.1 MGP_AJ_G0017115.1 mouse_genomes_project 10 31779103 31782179 + MGP_AJ_P0024900 Tspyl1 protein_coding protein_coding MGP_AJ_T0009632.1 MGP_AJ_G0007754.1 mouse_genomes_project 10 120930978 120931075 + Mir6412 miRNA miRNA MGP_AJ_T0024621.1 MGP_AJ_G0017007.1 mouse_genomes_project 10 11722722 11784090 + MGP_AJ_P0024621 Nmbr protein_coding protein_coding MGP_AJ_T0024622.1 MGP_AJ_G0017007.1 mouse_genomes_project 10 11722728 11768597 + Nmbr protein_coding processed_transcript MGP_AJ_T0024623.1 MGP_AJ_G0017007.1 mouse_genomes_project 10 11722740 11776333 + Nmbr protein_coding processed_transcript MGP_AJ_T0024624.1 MGP_AJ_G0017007.1 mouse_genomes_project 10 11722752 11784613 + MGP_AJ_P0024624 Nmbr protein_coding protein_coding MGP_AJ_T0024625.1 MGP_AJ_G0017007.1 mouse_genomes_project 10 11722758 11737099 + Nmbr protein_coding retained_intron MGP_AJ_T0024627.1 MGP_AJ_G0017007.1 mouse_genomes_project 10 11777471 11788167 + MGP_AJ_P0024627 Nmbr protein_coding protein_coding MGP_AJ_T0024628.1 MGP_AJ_G0017007.1 mouse_genomes_project 10 11777533 11787900 + MGP_AJ_P0024628 Nmbr protein_coding nonsense_mediated_decay MGP_AJ_T0024629.1 MGP_AJ_G0017007.1 mouse_genomes_project 10 11777533 11787900 + MGP_AJ_P0024629 Nmbr protein_coding protein_coding MGP_AJ_T0006074.1 MGP_AJ_G0005084.1 mouse_genomes_project 10 9914850 9921330 - B230208H11Rik lincRNA lincRNA MGP_AJ_T0006075.1 MGP_AJ_G0005084.1 mouse_genomes_project 10 9914881 9921320 - B230208H11Rik lincRNA lincRNA MGP_AJ_T0024668.1 MGP_AJ_G0017023.1 mouse_genomes_project 10 16660315 16678492 + MGP_AJ_P0024668 Ifngr1 protein_coding protein_coding MGP_AJ_T0024669.1 MGP_AJ_G0017023.1 mouse_genomes_project 10 16660324 16666217 + Ifngr1 protein_coding retained_intron MGP_AJ_T0024670.1 MGP_AJ_G0017023.1 mouse_genomes_project 10 16660397 16672020 + MGP_AJ_P0024670 Ifngr1 protein_coding nonsense_mediated_decay MGP_AJ_T0024671.1 MGP_AJ_G0017023.1 mouse_genomes_project 10 16660419 16669770 + MGP_AJ_P0024671 Ifngr1 protein_coding nonsense_mediated_decay MGP_AJ_T0024672.1 MGP_AJ_G0017023.1 mouse_genomes_project 10 16660428 16672040 + MGP_AJ_P0024672 Ifngr1 protein_coding nonsense_mediated_decay MGP_AJ_T0024673.1 MGP_AJ_G0017023.1 mouse_genomes_project 10 16674184 16677518 + Ifngr1 protein_coding retained_intron MGP_AJ_T0025113.1 MGP_AJ_G0017181.1 mouse_genomes_project 10 42067142 42088800 - MGP_AJ_P0025113 Prdm1 protein_coding protein_coding MGP_AJ_T0025114.1 MGP_AJ_G0017181.1 mouse_genomes_project 10 42068165 42087262 - MGP_AJ_P0025114 Prdm1 protein_coding unknown_likely_coding MGP_AJ_T0025115.1 MGP_AJ_G0017181.1 mouse_genomes_project 10 42068258 42088739 - MGP_AJ_P0025115 Prdm1 protein_coding protein_coding MGP_AJ_T0025116.1 MGP_AJ_G0017181.1 mouse_genomes_project 10 42076735 42159375 - Prdm1 protein_coding processed_transcript MGP_AJ_T0025895.1 MGP_AJ_G0017378.1 mouse_genomes_project 10 75244006 75267100 + MGP_AJ_P0025895 Ube2g2 protein_coding nonsense_mediated_decay MGP_AJ_T0025896.1 MGP_AJ_G0017378.1 mouse_genomes_project 10 75244057 75268539 + MGP_AJ_P0025896 Ube2g2 protein_coding protein_coding MGP_AJ_T0025897.1 MGP_AJ_G0017378.1 mouse_genomes_project 10 75244061 75264041 + MGP_AJ_P0025897 Ube2g2 protein_coding protein_coding MGP_AJ_T0025898.1 MGP_AJ_G0017378.1 mouse_genomes_project 10 75263726 75267049 + Ube2g2 protein_coding retained_intron MGP_AJ_T0026401.1 MGP_AJ_G0017524.1 mouse_genomes_project 10 79068317 79070539 - MGP_AJ_P0026401 Mrpl54 protein_coding protein_coding MGP_AJ_T0026402.1 MGP_AJ_G0017524.1 mouse_genomes_project 10 79069034 79070529 - Mrpl54 protein_coding retained_intron MGP_AJ_T0102220.1 MGP_AJ_G0039963.1 mouse_genomes_project 10 128057442 128058334 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0006089.1 MGP_AJ_G0005095.1 mouse_genomes_project 10 34839344 34881510 + Gm26535 lincRNA lincRNA MGP_AJ_T0026209.1 MGP_AJ_G0017470.1 mouse_genomes_project 10 78025570 78045284 + MGP_AJ_P0026209 Dazap1 protein_coding protein_coding MGP_AJ_T0026210.1 MGP_AJ_G0017470.1 mouse_genomes_project 10 78029064 78053789 + MGP_AJ_P0026210 Dazap1 protein_coding protein_coding MGP_AJ_T0026211.1 MGP_AJ_G0017470.1 mouse_genomes_project 10 78029096 78053274 + MGP_AJ_P0026211 Dazap1 protein_coding protein_coding MGP_AJ_T0026212.1 MGP_AJ_G0017470.1 mouse_genomes_project 10 78029154 78053789 + MGP_AJ_P0026212 Dazap1 protein_coding protein_coding MGP_AJ_T0026213.1 MGP_AJ_G0017470.1 mouse_genomes_project 10 78029204 78042655 + Dazap1 protein_coding processed_transcript MGP_AJ_T0026214.1 MGP_AJ_G0017470.1 mouse_genomes_project 10 78044701 78049714 + Dazap1 protein_coding retained_intron MGP_AJ_T0026215.1 MGP_AJ_G0017470.1 mouse_genomes_project 10 78047145 78048800 + Dazap1 protein_coding retained_intron MGP_AJ_T0026807.1 MGP_AJ_G0017621.1 mouse_genomes_project 10 89066529 89163159 - MGP_AJ_P0026807 Apaf1 protein_coding protein_coding MGP_AJ_T0026808.1 MGP_AJ_G0017621.1 mouse_genomes_project 10 89066531 89068810 - Apaf1 protein_coding retained_intron MGP_AJ_T0026809.1 MGP_AJ_G0017621.1 mouse_genomes_project 10 89066536 89163267 - MGP_AJ_P0026809 Apaf1 protein_coding protein_coding MGP_AJ_T0026810.1 MGP_AJ_G0017621.1 mouse_genomes_project 10 89067821 89163201 - MGP_AJ_P0026810 Apaf1 protein_coding protein_coding MGP_AJ_T0026811.1 MGP_AJ_G0017621.1 mouse_genomes_project 10 89072941 89077613 - Apaf1 protein_coding processed_transcript MGP_AJ_T0026812.1 MGP_AJ_G0017621.1 mouse_genomes_project 10 89073942 89076924 - Apaf1 protein_coding retained_intron MGP_AJ_T0026813.1 MGP_AJ_G0017621.1 mouse_genomes_project 10 89144995 89162926 - MGP_AJ_P0026813 Apaf1 protein_coding protein_coding MGP_AJ_T0026814.1 MGP_AJ_G0017621.1 mouse_genomes_project 10 89146493 89163267 - MGP_AJ_P0026814 Apaf1 protein_coding protein_coding MGP_AJ_T0024964.1 MGP_AJ_G0017134.1 mouse_genomes_project 10 37460903 37489790 - MGP_AJ_P0024964 Mfsd4b5 protein_coding protein_coding MGP_AJ_T0024965.1 MGP_AJ_G0017134.1 mouse_genomes_project 10 37471224 37489793 - MGP_AJ_P0024965 Mfsd4b5 protein_coding protein_coding MGP_AJ_T0024966.1 MGP_AJ_G0017134.1 mouse_genomes_project 10 37473214 37489786 - MGP_AJ_P0024966 Mfsd4b5 protein_coding protein_coding MGP_AJ_T0024967.1 MGP_AJ_G0017134.1 mouse_genomes_project 10 37476246 37489787 - MGP_AJ_P0024967 Mfsd4b5 protein_coding protein_coding MGP_AJ_T0024968.1 MGP_AJ_G0017134.1 mouse_genomes_project 10 37477221 37477875 - MGP_AJ_P0024968 Mfsd4b5 protein_coding protein_coding MGP_AJ_T0027550.1 MGP_AJ_G0017877.1 mouse_genomes_project 10 127794235 127796982 + MGP_AJ_P0027550 Olfr776 protein_coding protein_coding MGP_AJ_T0100559.1 MGP_AJ_G0038525.1 mouse_genomes_project 10 127823839 127823973 + Gm25764 snoRNA snoRNA MGP_AJ_T0024929.1 MGP_AJ_G0017125.1 mouse_genomes_project 10 36617581 36630944 - MGP_AJ_P0024929 Fam229b protein_coding protein_coding MGP_AJ_T0024930.1 MGP_AJ_G0017125.1 mouse_genomes_project 10 36617585 36630938 - MGP_AJ_P0024930 Fam229b protein_coding protein_coding MGP_AJ_T0024931.1 MGP_AJ_G0017125.1 mouse_genomes_project 10 36617587 36622299 - MGP_AJ_P0024931 Fam229b protein_coding protein_coding MGP_AJ_T0024932.1 MGP_AJ_G0017125.1 mouse_genomes_project 10 36617587 36630886 - MGP_AJ_P0024932 Fam229b protein_coding protein_coding MGP_AJ_T0024933.1 MGP_AJ_G0017125.1 mouse_genomes_project 10 36617595 36630938 - MGP_AJ_P0024933 Fam229b protein_coding protein_coding MGP_AJ_T0024934.1 MGP_AJ_G0017125.1 mouse_genomes_project 10 36617596 36630938 - MGP_AJ_P0024934 Fam229b protein_coding protein_coding MGP_AJ_T0024935.1 MGP_AJ_G0017125.1 mouse_genomes_project 10 36617597 36621511 - MGP_AJ_P0024935 Fam229b protein_coding protein_coding MGP_AJ_T0024936.1 MGP_AJ_G0017125.1 mouse_genomes_project 10 36617601 36630952 - MGP_AJ_P0024936 Fam229b protein_coding protein_coding MGP_AJ_T0024937.1 MGP_AJ_G0017125.1 mouse_genomes_project 10 36617645 36630938 - MGP_AJ_P0024937 Fam229b protein_coding protein_coding MGP_AJ_T0024938.1 MGP_AJ_G0017125.1 mouse_genomes_project 10 36618396 36630895 - Fam229b protein_coding retained_intron MGP_AJ_T0027605.1 MGP_AJ_G0017918.1 mouse_genomes_project 10 128787130 128799760 - MGP_AJ_P0027605 Neurod4 protein_coding protein_coding MGP_AJ_T0000824.1 MGP_AJ_G0000759.1 mouse_genomes_project 10 96651199 96651563 - TEC TEC MGP_AJ_T0100496.1 MGP_AJ_G0038462.1 mouse_genomes_project 10 4829553 4829674 - Gm24726 snoRNA snoRNA MGP_AJ_T0100495.1 MGP_AJ_G0038461.1 mouse_genomes_project 10 1091027 1091159 + Gm25369 snoRNA snoRNA MGP_AJ_T0024692.1 MGP_AJ_G0017032.1 mouse_genomes_project 10 17367500 17397554 + MGP_AJ_P0024692 Bclaf1 protein_coding protein_coding MGP_AJ_T0024693.1 MGP_AJ_G0017032.1 mouse_genomes_project 10 17367503 17395320 + MGP_AJ_P0024693 Bclaf1 protein_coding nonsense_mediated_decay MGP_AJ_T0024694.1 MGP_AJ_G0017032.1 mouse_genomes_project 10 17367515 17397552 + MGP_AJ_P0024694 Bclaf1 protein_coding protein_coding MGP_AJ_T0024695.1 MGP_AJ_G0017032.1 mouse_genomes_project 10 17367559 17377667 + Bclaf1 protein_coding retained_intron MGP_AJ_T0024696.1 MGP_AJ_G0017032.1 mouse_genomes_project 10 17367560 17395316 + MGP_AJ_P0024696 Bclaf1 protein_coding nonsense_mediated_decay MGP_AJ_T0024697.1 MGP_AJ_G0017032.1 mouse_genomes_project 10 17367568 17395317 + MGP_AJ_P0024697 Bclaf1 protein_coding protein_coding MGP_AJ_T0024698.1 MGP_AJ_G0017032.1 mouse_genomes_project 10 17378791 17399665 + MGP_AJ_P0024698 Bclaf1 protein_coding nonsense_mediated_decay MGP_AJ_T0024699.1 MGP_AJ_G0017032.1 mouse_genomes_project 10 17381109 17387323 + MGP_AJ_P0024699 Bclaf1 protein_coding nonsense_mediated_decay MGP_AJ_T0024700.1 MGP_AJ_G0017032.1 mouse_genomes_project 10 17384113 17388955 + Bclaf1 protein_coding retained_intron MGP_AJ_T0024701.1 MGP_AJ_G0017032.1 mouse_genomes_project 10 17388318 17395260 + Bclaf1 protein_coding retained_intron MGP_AJ_T0026900.1 MGP_AJ_G0017641.1 mouse_genomes_project 10 92312335 92333932 + MGP_AJ_P0026900 Ndufa12 protein_coding protein_coding MGP_AJ_T0026901.1 MGP_AJ_G0017641.1 mouse_genomes_project 10 92312339 92316813 + Ndufa12 protein_coding retained_intron MGP_AJ_T0026902.1 MGP_AJ_G0017641.1 mouse_genomes_project 10 92313346 92333232 + MGP_AJ_P0026902 Ndufa12 protein_coding nonsense_mediated_decay MGP_AJ_T0026930.1 MGP_AJ_G0017654.1 mouse_genomes_project 10 95650739 95689163 + MGP_AJ_P0026930 Dcn protein_coding protein_coding MGP_AJ_T0026931.1 MGP_AJ_G0017654.1 mouse_genomes_project 10 95653589 95689163 + MGP_AJ_P0026931 Dcn protein_coding protein_coding MGP_AJ_T0027452.1 MGP_AJ_G0017832.1 mouse_genomes_project 10 126719044 126720988 - MGP_AJ_P0027452 Il23a protein_coding protein_coding MGP_AJ_T0100512.1 MGP_AJ_G0038478.1 mouse_genomes_project 10 26739365 26739493 + Gm24286 snoRNA snoRNA MGP_AJ_T0027538.1 MGP_AJ_G0017868.1 mouse_genomes_project 10 127456499 127463101 + MGP_AJ_P0027538 Olfr9 protein_coding protein_coding MGP_AJ_T0024360.1 MGP_AJ_G0016949.1 mouse_genomes_project 10 166011 176455 - MGP_AJ_P0024360 H60c protein_coding protein_coding MGP_AJ_T0026125.1 MGP_AJ_G0017456.1 mouse_genomes_project 10 77773729 77789006 + MGP_AJ_P0026125 Hmha1 protein_coding protein_coding MGP_AJ_T0026126.1 MGP_AJ_G0017456.1 mouse_genomes_project 10 77773815 77789003 + Hmha1 protein_coding retained_intron MGP_AJ_T0026127.1 MGP_AJ_G0017456.1 mouse_genomes_project 10 77773992 77789003 + MGP_AJ_P0026127 Hmha1 protein_coding protein_coding MGP_AJ_T0026128.1 MGP_AJ_G0017456.1 mouse_genomes_project 10 77776549 77789002 + MGP_AJ_P0026128 Hmha1 protein_coding protein_coding MGP_AJ_T0026129.1 MGP_AJ_G0017456.1 mouse_genomes_project 10 77778639 77788996 + Hmha1 protein_coding retained_intron MGP_AJ_T0027449.1 MGP_AJ_G0017830.1 mouse_genomes_project 10 126689871 126692025 + MGP_AJ_P0027449 Apof protein_coding protein_coding MGP_AJ_T0003102.1 MGP_AJ_G0002884.1 mouse_genomes_project 10 120077078 120078448 + C030027H14Rik antisense antisense MGP_AJ_T0025363.1 MGP_AJ_G0017263.1 mouse_genomes_project 10 59208731 59221717 + MGP_AJ_P0025363 Sar1a protein_coding protein_coding MGP_AJ_T0025726.1 MGP_AJ_G0017333.1 mouse_genomes_project 10 73096245 73116082 + MGP_AJ_P0025726 Snrpd3 protein_coding protein_coding MGP_AJ_T0025727.1 MGP_AJ_G0017333.1 mouse_genomes_project 10 73096708 73098561 + Snrpd3 protein_coding retained_intron MGP_AJ_T0099283.1 MGP_AJ_G0037249.1 mouse_genomes_project 10 85434046 85434141 - Gm23191 snRNA snRNA MGP_AJ_T0026631.1 MGP_AJ_G0017582.1 mouse_genomes_project 10 83915566 83932826 + MGP_AJ_P0026631 Pwp1 protein_coding protein_coding MGP_AJ_T0026632.1 MGP_AJ_G0017582.1 mouse_genomes_project 10 83915619 83928418 + Pwp1 protein_coding retained_intron MGP_AJ_T0026633.1 MGP_AJ_G0017582.1 mouse_genomes_project 10 83915641 83925831 + MGP_AJ_P0026633 Pwp1 protein_coding nonsense_mediated_decay MGP_AJ_T0026634.1 MGP_AJ_G0017582.1 mouse_genomes_project 10 83919989 83928217 + Pwp1 protein_coding retained_intron MGP_AJ_T0027027.1 MGP_AJ_G0017692.1 mouse_genomes_project 10 107771250 107927027 - MGP_AJ_P0027027 Nav3 protein_coding unknown_likely_coding MGP_AJ_T0027028.1 MGP_AJ_G0017692.1 mouse_genomes_project 10 107772647 108093157 - MGP_AJ_P0027028 Nav3 protein_coding protein_coding MGP_AJ_T0027029.1 MGP_AJ_G0017692.1 mouse_genomes_project 10 107772647 107918339 - MGP_AJ_P0027029 Nav3 protein_coding protein_coding MGP_AJ_T0027030.1 MGP_AJ_G0017692.1 mouse_genomes_project 10 107806333 107815812 - Nav3 protein_coding processed_transcript MGP_AJ_T0027031.1 MGP_AJ_G0017692.1 mouse_genomes_project 10 107847406 107857125 - MGP_AJ_P0027031 Nav3 protein_coding protein_coding MGP_AJ_T0027032.1 MGP_AJ_G0017692.1 mouse_genomes_project 10 107974800 107998717 - Nav3 protein_coding retained_intron MGP_AJ_T0027033.1 MGP_AJ_G0017692.1 mouse_genomes_project 10 107993796 108537745 - Nav3 protein_coding retained_intron MGP_AJ_T0099280.1 MGP_AJ_G0037246.1 mouse_genomes_project 10 82588939 82589034 + Gm25657 snRNA snRNA MGP_AJ_T0009643.1 MGP_AJ_G0007765.1 mouse_genomes_project 10 126815210 126815279 + Mir6915 miRNA miRNA MGP_AJ_T0025556.1 MGP_AJ_G0017311.1 mouse_genomes_project 10 66862287 66878941 - MGP_AJ_P0025556 Cdk1 protein_coding protein_coding MGP_AJ_T0025557.1 MGP_AJ_G0017311.1 mouse_genomes_project 10 66863976 66878906 - MGP_AJ_P0025557 Cdk1 protein_coding protein_coding MGP_AJ_T0025558.1 MGP_AJ_G0017311.1 mouse_genomes_project 10 66866251 66868382 - Cdk1 protein_coding retained_intron MGP_AJ_T0025559.1 MGP_AJ_G0017311.1 mouse_genomes_project 10 66866382 66871163 - Cdk1 protein_coding retained_intron MGP_AJ_T0025560.1 MGP_AJ_G0017311.1 mouse_genomes_project 10 66866418 66876832 - MGP_AJ_P0025560 Cdk1 protein_coding protein_coding MGP_AJ_T0025561.1 MGP_AJ_G0017311.1 mouse_genomes_project 10 66866456 66871087 - Cdk1 protein_coding retained_intron MGP_AJ_T0025562.1 MGP_AJ_G0017311.1 mouse_genomes_project 10 66870657 66878913 - Cdk1 protein_coding retained_intron MGP_AJ_T0009612.1 MGP_AJ_G0007734.1 mouse_genomes_project 10 83263466 83263566 - Gm27392 miRNA miRNA MGP_AJ_T0027551.1 MGP_AJ_G0017878.1 mouse_genomes_project 10 127803466 127805631 - MGP_AJ_P0027551 Olfr777 protein_coding protein_coding MGP_AJ_T0027552.1 MGP_AJ_G0017878.1 mouse_genomes_project 10 127803466 127804402 - MGP_AJ_P0027552 Olfr777 protein_coding protein_coding MGP_AJ_T0027056.1 MGP_AJ_G0017701.1 mouse_genomes_project 10 110080460 110092273 - MGP_AJ_P0027056 Glipr1 protein_coding protein_coding MGP_AJ_T0027057.1 MGP_AJ_G0017701.1 mouse_genomes_project 10 110080467 110097586 - MGP_AJ_P0027057 Glipr1 protein_coding protein_coding MGP_AJ_T0027058.1 MGP_AJ_G0017701.1 mouse_genomes_project 10 110080472 110088501 - MGP_AJ_P0027058 Glipr1 protein_coding protein_coding MGP_AJ_T0027059.1 MGP_AJ_G0017701.1 mouse_genomes_project 10 110088473 110097596 - Glipr1 protein_coding processed_transcript MGP_AJ_T0027060.1 MGP_AJ_G0017701.1 mouse_genomes_project 10 110088573 110090828 - Glipr1 protein_coding processed_transcript MGP_AJ_T0025352.1 MGP_AJ_G0017255.1 mouse_genomes_project 10 58812259 58819684 + MGP_AJ_P0025352 Prf1 protein_coding protein_coding MGP_AJ_T0025149.1 MGP_AJ_G0017194.1 mouse_genomes_project 10 49321997 49365944 + Rfx6 protein_coding retained_intron MGP_AJ_T0025150.1 MGP_AJ_G0017194.1 mouse_genomes_project 10 49321997 49374455 + MGP_AJ_P0025150 Rfx6 protein_coding protein_coding MGP_AJ_T0025151.1 MGP_AJ_G0017194.1 mouse_genomes_project 10 49329761 49374455 + MGP_AJ_P0025151 Rfx6 protein_coding protein_coding MGP_AJ_T0027065.1 MGP_AJ_G0017705.1 mouse_genomes_project 10 110438419 110625210 + MGP_AJ_P0027065 Kcnc2 protein_coding unknown_likely_coding MGP_AJ_T0024987.1 MGP_AJ_G0017144.1 mouse_genomes_project 10 38350284 38402034 - MGP_AJ_P0024987 Cdc40 protein_coding protein_coding MGP_AJ_T0099298.1 MGP_AJ_G0037264.1 mouse_genomes_project 10 111094764 111094924 + Gm22507 snRNA snRNA MGP_AJ_T0009595.1 MGP_AJ_G0007717.1 mouse_genomes_project 10 75263764 75263848 + Mir1930 miRNA miRNA MGP_AJ_T0006099.1 MGP_AJ_G0005105.1 mouse_genomes_project 10 60841258 60844766 - Gm26789 lincRNA lincRNA MGP_AJ_T0006087.1 MGP_AJ_G0005093.1 mouse_genomes_project 10 21760576 21765741 + Gm15271 lincRNA lincRNA MGP_AJ_T0024776.1 MGP_AJ_G0017067.1 mouse_genomes_project 10 21455149 21496037 + MGP_AJ_P0024776 Stx7 protein_coding unknown_likely_coding MGP_AJ_T0024812.1 MGP_AJ_G0017076.1 mouse_genomes_project 10 22846587 22855109 - MGP_AJ_P0024812 Smlr1 protein_coding protein_coding MGP_AJ_T0024813.1 MGP_AJ_G0017076.1 mouse_genomes_project 10 22850892 22854984 - Smlr1 protein_coding retained_intron MGP_AJ_T0024512.1 MGP_AJ_G0016985.1 mouse_genomes_project 10 6763909 6908614 - MGP_AJ_P0024512 Stxbp5 protein_coding protein_coding MGP_AJ_T0024513.1 MGP_AJ_G0016985.1 mouse_genomes_project 10 6768311 6909010 - MGP_AJ_P0024513 Stxbp5 protein_coding protein_coding MGP_AJ_T0024514.1 MGP_AJ_G0016985.1 mouse_genomes_project 10 6768349 6806368 - Stxbp5 protein_coding processed_transcript MGP_AJ_T0024515.1 MGP_AJ_G0016985.1 mouse_genomes_project 10 6768934 6788662 - Stxbp5 protein_coding retained_intron MGP_AJ_T0024516.1 MGP_AJ_G0016985.1 mouse_genomes_project 10 6769266 6908614 - MGP_AJ_P0024516 Stxbp5 protein_coding protein_coding MGP_AJ_T0024517.1 MGP_AJ_G0016985.1 mouse_genomes_project 10 6775440 6778862 - Stxbp5 protein_coding retained_intron MGP_AJ_T0024518.1 MGP_AJ_G0016985.1 mouse_genomes_project 10 6775443 6777290 - Stxbp5 protein_coding retained_intron MGP_AJ_T0024519.1 MGP_AJ_G0016985.1 mouse_genomes_project 10 6775550 6786637 - Stxbp5 protein_coding retained_intron MGP_AJ_T0024520.1 MGP_AJ_G0016985.1 mouse_genomes_project 10 6777778 6806528 - MGP_AJ_P0024520 Stxbp5 protein_coding protein_coding MGP_AJ_T0024521.1 MGP_AJ_G0016985.1 mouse_genomes_project 10 6777944 6786637 - Stxbp5 protein_coding retained_intron MGP_AJ_T0024522.1 MGP_AJ_G0016985.1 mouse_genomes_project 10 6797366 6806499 - Stxbp5 protein_coding retained_intron MGP_AJ_T0102210.1 MGP_AJ_G0039953.1 mouse_genomes_project 10 21310257 21310790 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0012421.1 MGP_AJ_G0010516.1 mouse_genomes_project 10 58825199 58825750 + processed_pseudogene processed_pseudogene MGP_AJ_T0025118.1 MGP_AJ_G0017183.1 mouse_genomes_project 10 42821709 42962484 + MGP_AJ_P0025118 Popdc3 protein_coding protein_coding MGP_AJ_T0025119.1 MGP_AJ_G0017183.1 mouse_genomes_project 10 42935490 42965822 + MGP_AJ_P0025119 Popdc3 protein_coding protein_coding MGP_AJ_T0025120.1 MGP_AJ_G0017183.1 mouse_genomes_project 10 42935587 42965487 + MGP_AJ_P0025120 Popdc3 protein_coding protein_coding MGP_AJ_T0026377.1 MGP_AJ_G0017518.1 mouse_genomes_project 10 78980541 78981782 - MGP_AJ_P0026377 4930442H23Rik protein_coding protein_coding MGP_AJ_T0100509.1 MGP_AJ_G0038475.1 mouse_genomes_project 10 21091753 21091827 - Gm23130 snoRNA snoRNA MGP_AJ_T0025483.1 MGP_AJ_G0017290.1 mouse_genomes_project 10 60657359 60657809 + MGP_AJ_P0025483 Atoh7 protein_coding protein_coding MGP_AJ_T0026938.1 MGP_AJ_G0017660.1 mouse_genomes_project 10 95896784 95898666 - MGP_AJ_P0026938 C030005K15Rik protein_coding protein_coding MGP_AJ_T0009610.1 MGP_AJ_G0007732.1 mouse_genomes_project 10 79220818 79220876 - Mir1191b miRNA miRNA MGP_AJ_T0102219.1 MGP_AJ_G0039962.1 mouse_genomes_project 10 127904609 127905869 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0027385.1 MGP_AJ_G0017811.1 mouse_genomes_project 10 126151858 126153302 + MGP_AJ_P0027385 protein_coding protein_coding MGP_AJ_T0006079.1 MGP_AJ_G0005088.1 mouse_genomes_project 10 18488864 18497310 + 1700021A07Rik lincRNA lincRNA MGP_AJ_T0006080.1 MGP_AJ_G0005088.1 mouse_genomes_project 10 18488952 18496489 + 1700021A07Rik lincRNA lincRNA MGP_AJ_T0006081.1 MGP_AJ_G0005088.1 mouse_genomes_project 10 18496084 18496393 + 1700021A07Rik lincRNA lincRNA MGP_AJ_T0025270.1 MGP_AJ_G0017238.1 mouse_genomes_project 10 57266874 57268077 + MGP_AJ_P0025270 protein_coding protein_coding MGP_AJ_T0009619.1 MGP_AJ_G0007741.1 mouse_genomes_project 10 92077781 92077877 - Mir331 miRNA miRNA MGP_AJ_T0027155.1 MGP_AJ_G0017738.1 mouse_genomes_project 10 115975442 116018098 - MGP_AJ_P0027155 Nup107 protein_coding protein_coding MGP_AJ_T0027156.1 MGP_AJ_G0017738.1 mouse_genomes_project 10 115975461 116018105 - MGP_AJ_P0027156 Nup107 protein_coding protein_coding MGP_AJ_T0026482.1 MGP_AJ_G0017544.1 mouse_genomes_project 10 79381646 79397552 + Tle2 protein_coding retained_intron MGP_AJ_T0026483.1 MGP_AJ_G0017544.1 mouse_genomes_project 10 79381819 79382918 + MGP_AJ_P0026483 Tle2 protein_coding protein_coding MGP_AJ_T0026484.1 MGP_AJ_G0017544.1 mouse_genomes_project 10 79381824 79387411 + MGP_AJ_P0026484 Tle2 protein_coding protein_coding MGP_AJ_T0026485.1 MGP_AJ_G0017544.1 mouse_genomes_project 10 79382345 79397556 + Tle2 protein_coding retained_intron MGP_AJ_T0026486.1 MGP_AJ_G0017544.1 mouse_genomes_project 10 79382347 79397559 + MGP_AJ_P0026486 Tle2 protein_coding protein_coding MGP_AJ_T0026487.1 MGP_AJ_G0017544.1 mouse_genomes_project 10 79382416 79397559 + MGP_AJ_P0026487 Tle2 protein_coding protein_coding MGP_AJ_T0026488.1 MGP_AJ_G0017544.1 mouse_genomes_project 10 79382502 79397554 + Tle2 protein_coding retained_intron MGP_AJ_T0026489.1 MGP_AJ_G0017544.1 mouse_genomes_project 10 79382584 79387721 + MGP_AJ_P0026489 Tle2 protein_coding protein_coding MGP_AJ_T0026490.1 MGP_AJ_G0017544.1 mouse_genomes_project 10 79382617 79397931 + MGP_AJ_P0026490 Tle2 protein_coding protein_coding MGP_AJ_T0026491.1 MGP_AJ_G0017544.1 mouse_genomes_project 10 79387919 79394013 + Tle2 protein_coding retained_intron MGP_AJ_T0026492.1 MGP_AJ_G0017544.1 mouse_genomes_project 10 79389628 79393970 + Tle2 protein_coding retained_intron MGP_AJ_T0026493.1 MGP_AJ_G0017544.1 mouse_genomes_project 10 79394177 79395032 + Tle2 protein_coding retained_intron MGP_AJ_T0026494.1 MGP_AJ_G0017544.1 mouse_genomes_project 10 79394511 79397509 + Tle2 protein_coding retained_intron MGP_AJ_T0026495.1 MGP_AJ_G0017544.1 mouse_genomes_project 10 79395054 79397559 + MGP_AJ_P0026495 Tle2 protein_coding protein_coding MGP_AJ_T0026496.1 MGP_AJ_G0017544.1 mouse_genomes_project 10 79395084 79397559 + MGP_AJ_P0026496 Tle2 protein_coding protein_coding MGP_AJ_T0026497.1 MGP_AJ_G0017544.1 mouse_genomes_project 10 79395726 79397387 + Tle2 protein_coding retained_intron MGP_AJ_T0006067.1 MGP_AJ_G0005078.1 mouse_genomes_project 10 268887 273928 - lincRNA lincRNA MGP_AJ_T0027398.1 MGP_AJ_G0017819.1 mouse_genomes_project 10 126417162 126431892 + MGP_AJ_P0027398 Prim1 protein_coding protein_coding MGP_AJ_T0027399.1 MGP_AJ_G0017819.1 mouse_genomes_project 10 126417166 126431946 + MGP_AJ_P0027399 Prim1 protein_coding protein_coding MGP_AJ_T0027400.1 MGP_AJ_G0017819.1 mouse_genomes_project 10 126417190 126431774 + Prim1 protein_coding retained_intron MGP_AJ_T0027401.1 MGP_AJ_G0017819.1 mouse_genomes_project 10 126421731 126423955 + Prim1 protein_coding retained_intron MGP_AJ_T0027402.1 MGP_AJ_G0017819.1 mouse_genomes_project 10 126428595 126431942 + Prim1 protein_coding retained_intron MGP_AJ_T0025358.1 MGP_AJ_G0017261.1 mouse_genomes_project 10 59123248 59157122 + MGP_AJ_P0025358 Npffr1 protein_coding protein_coding MGP_AJ_T0025178.1 MGP_AJ_G0017208.1 mouse_genomes_project 10 51263543 51378318 - MGP_AJ_P0025178 Fam184a protein_coding protein_coding MGP_AJ_T0025179.1 MGP_AJ_G0017208.1 mouse_genomes_project 10 51263764 51322539 - MGP_AJ_P0025179 Fam184a protein_coding protein_coding MGP_AJ_T0025180.1 MGP_AJ_G0017208.1 mouse_genomes_project 10 51263767 51285902 - MGP_AJ_P0025180 Fam184a protein_coding nonsense_mediated_decay MGP_AJ_T0025181.1 MGP_AJ_G0017208.1 mouse_genomes_project 10 51263768 51327082 - MGP_AJ_P0025181 Fam184a protein_coding protein_coding MGP_AJ_T0025182.1 MGP_AJ_G0017208.1 mouse_genomes_project 10 51264028 51277961 - MGP_AJ_P0025182 Fam184a protein_coding protein_coding MGP_AJ_T0025183.1 MGP_AJ_G0017208.1 mouse_genomes_project 10 51264032 51268668 - MGP_AJ_P0025183 Fam184a protein_coding protein_coding MGP_AJ_T0025184.1 MGP_AJ_G0017208.1 mouse_genomes_project 10 51268578 51303717 - Fam184a protein_coding processed_transcript MGP_AJ_T0025185.1 MGP_AJ_G0017208.1 mouse_genomes_project 10 51324735 51378298 - Fam184a protein_coding retained_intron MGP_AJ_T0026924.1 MGP_AJ_G0017649.1 mouse_genomes_project 10 93659689 93691442 + MGP_AJ_P0026924 Ube2n protein_coding protein_coding MGP_AJ_T0026431.1 MGP_AJ_G0017532.1 mouse_genomes_project 10 79161304 79170037 + MGP_AJ_P0026431 Mfsd12 protein_coding protein_coding MGP_AJ_T0026432.1 MGP_AJ_G0017532.1 mouse_genomes_project 10 79161365 79165044 + MGP_AJ_P0026432 Mfsd12 protein_coding nonsense_mediated_decay MGP_AJ_T0026110.1 MGP_AJ_G0017451.1 mouse_genomes_project 10 77716405 77725440 + MGP_AJ_P0026110 Wdr18 protein_coding protein_coding MGP_AJ_T0026333.1 MGP_AJ_G0017508.1 mouse_genomes_project 10 78742236 78809666 - MGP_AJ_P0026333 Gng7 protein_coding protein_coding MGP_AJ_T0026334.1 MGP_AJ_G0017508.1 mouse_genomes_project 10 78742236 78791735 - MGP_AJ_P0026334 Gng7 protein_coding protein_coding MGP_AJ_T0026335.1 MGP_AJ_G0017508.1 mouse_genomes_project 10 78742236 78809646 - MGP_AJ_P0026335 Gng7 protein_coding protein_coding MGP_AJ_T0026336.1 MGP_AJ_G0017508.1 mouse_genomes_project 10 78742241 78791748 - MGP_AJ_P0026336 Gng7 protein_coding protein_coding MGP_AJ_T0026337.1 MGP_AJ_G0017508.1 mouse_genomes_project 10 78744799 78788560 - MGP_AJ_P0026337 Gng7 protein_coding protein_coding MGP_AJ_T0026338.1 MGP_AJ_G0017508.1 mouse_genomes_project 10 78745324 78809634 - MGP_AJ_P0026338 Gng7 protein_coding protein_coding MGP_AJ_T0025153.1 MGP_AJ_G0017196.1 mouse_genomes_project 10 49667389 49673359 + MGP_AJ_P0025153 Vgll2 protein_coding protein_coding MGP_AJ_T0025154.1 MGP_AJ_G0017196.1 mouse_genomes_project 10 49667415 49673231 + MGP_AJ_P0025154 Vgll2 protein_coding protein_coding MGP_AJ_T0012417.1 MGP_AJ_G0010512.1 mouse_genomes_project 10 50027734 50028169 - processed_pseudogene processed_pseudogene MGP_AJ_T0025789.1 MGP_AJ_G0017353.1 mouse_genomes_project 10 73644994 73700146 - MGP_AJ_P0025789 Slc5a4b protein_coding protein_coding MGP_AJ_T0000819.1 MGP_AJ_G0000755.1 mouse_genomes_project 10 76309861 76312614 - TEC TEC MGP_AJ_T0024767.1 MGP_AJ_G0017058.1 mouse_genomes_project 10 21263286 21264300 + MGP_AJ_P0024767 Taar5 protein_coding protein_coding MGP_AJ_T0027162.1 MGP_AJ_G0017741.1 mouse_genomes_project 10 116445727 116450838 + MGP_AJ_P0027162 Il22 protein_coding protein_coding MGP_AJ_T0027163.1 MGP_AJ_G0017741.1 mouse_genomes_project 10 116447596 116450834 + Il22 protein_coding retained_intron MGP_AJ_T0027072.1 MGP_AJ_G0017709.1 mouse_genomes_project 10 113244246 113353127 - MGP_AJ_P0027072 Tph2 protein_coding protein_coding MGP_AJ_T0027073.1 MGP_AJ_G0017709.1 mouse_genomes_project 10 113342153 113343653 - Tph2 protein_coding processed_transcript MGP_AJ_T0025651.1 MGP_AJ_G0017324.1 mouse_genomes_project 10 70687055 71877935 + Pcdh15 protein_coding retained_intron MGP_AJ_T0025652.1 MGP_AJ_G0017324.1 mouse_genomes_project 10 70687148 71290675 + Pcdh15 protein_coding retained_intron MGP_AJ_T0025653.1 MGP_AJ_G0017324.1 mouse_genomes_project 10 70687166 71073993 + Pcdh15 protein_coding retained_intron MGP_AJ_T0025654.1 MGP_AJ_G0017324.1 mouse_genomes_project 10 71389139 72205110 + MGP_AJ_P0025654 Pcdh15 protein_coding protein_coding MGP_AJ_T0025655.1 MGP_AJ_G0017324.1 mouse_genomes_project 10 71389139 72195498 + MGP_AJ_P0025655 Pcdh15 protein_coding protein_coding MGP_AJ_T0025656.1 MGP_AJ_G0017324.1 mouse_genomes_project 10 71389155 72207211 + MGP_AJ_P0025656 Pcdh15 protein_coding protein_coding MGP_AJ_T0025657.1 MGP_AJ_G0017324.1 mouse_genomes_project 10 71389155 72205460 + MGP_AJ_P0025657 Pcdh15 protein_coding protein_coding MGP_AJ_T0025658.1 MGP_AJ_G0017324.1 mouse_genomes_project 10 71389155 72193397 + MGP_AJ_P0025658 Pcdh15 protein_coding protein_coding MGP_AJ_T0025659.1 MGP_AJ_G0017324.1 mouse_genomes_project 10 71389155 72205460 + MGP_AJ_P0025659 Pcdh15 protein_coding nonsense_mediated_decay MGP_AJ_T0025660.1 MGP_AJ_G0017324.1 mouse_genomes_project 10 71389155 72193397 + MGP_AJ_P0025660 Pcdh15 protein_coding protein_coding MGP_AJ_T0025661.1 MGP_AJ_G0017324.1 mouse_genomes_project 10 71389155 72205460 + MGP_AJ_P0025661 Pcdh15 protein_coding protein_coding MGP_AJ_T0025662.1 MGP_AJ_G0017324.1 mouse_genomes_project 10 71389155 72205460 + MGP_AJ_P0025662 Pcdh15 protein_coding protein_coding MGP_AJ_T0025663.1 MGP_AJ_G0017324.1 mouse_genomes_project 10 71389155 72205460 + MGP_AJ_P0025663 Pcdh15 protein_coding protein_coding MGP_AJ_T0025664.1 MGP_AJ_G0017324.1 mouse_genomes_project 10 71389155 72193397 + MGP_AJ_P0025664 Pcdh15 protein_coding protein_coding MGP_AJ_T0025665.1 MGP_AJ_G0017324.1 mouse_genomes_project 10 71389155 72205460 + MGP_AJ_P0025665 Pcdh15 protein_coding protein_coding MGP_AJ_T0025666.1 MGP_AJ_G0017324.1 mouse_genomes_project 10 71389155 72194331 + MGP_AJ_P0025666 Pcdh15 protein_coding protein_coding MGP_AJ_T0025667.1 MGP_AJ_G0017324.1 mouse_genomes_project 10 71389155 72193397 + MGP_AJ_P0025667 Pcdh15 protein_coding protein_coding MGP_AJ_T0025668.1 MGP_AJ_G0017324.1 mouse_genomes_project 10 71389155 72193269 + MGP_AJ_P0025668 Pcdh15 protein_coding protein_coding MGP_AJ_T0025669.1 MGP_AJ_G0017324.1 mouse_genomes_project 10 71389155 72207047 + MGP_AJ_P0025669 Pcdh15 protein_coding protein_coding MGP_AJ_T0025670.1 MGP_AJ_G0017324.1 mouse_genomes_project 10 71389155 72193397 + MGP_AJ_P0025670 Pcdh15 protein_coding nonsense_mediated_decay MGP_AJ_T0025671.1 MGP_AJ_G0017324.1 mouse_genomes_project 10 71389155 72193397 + MGP_AJ_P0025671 Pcdh15 protein_coding nonsense_mediated_decay MGP_AJ_T0025672.1 MGP_AJ_G0017324.1 mouse_genomes_project 10 71389155 72205460 + MGP_AJ_P0025672 Pcdh15 protein_coding protein_coding MGP_AJ_T0025673.1 MGP_AJ_G0017324.1 mouse_genomes_project 10 71389155 72193397 + MGP_AJ_P0025673 Pcdh15 protein_coding protein_coding MGP_AJ_T0025674.1 MGP_AJ_G0017324.1 mouse_genomes_project 10 71389155 72210470 + MGP_AJ_P0025674 Pcdh15 protein_coding protein_coding MGP_AJ_T0025675.1 MGP_AJ_G0017324.1 mouse_genomes_project 10 71389155 72193397 + MGP_AJ_P0025675 Pcdh15 protein_coding protein_coding MGP_AJ_T0025676.1 MGP_AJ_G0017324.1 mouse_genomes_project 10 71389155 72207047 + MGP_AJ_P0025676 Pcdh15 protein_coding protein_coding MGP_AJ_T0025677.1 MGP_AJ_G0017324.1 mouse_genomes_project 10 71389155 72205460 + MGP_AJ_P0025677 Pcdh15 protein_coding protein_coding MGP_AJ_T0025678.1 MGP_AJ_G0017324.1 mouse_genomes_project 10 71389155 72193397 + MGP_AJ_P0025678 Pcdh15 protein_coding protein_coding MGP_AJ_T0025679.1 MGP_AJ_G0017324.1 mouse_genomes_project 10 71389215 72069680 + MGP_AJ_P0025679 Pcdh15 protein_coding protein_coding MGP_AJ_T0025680.1 MGP_AJ_G0017324.1 mouse_genomes_project 10 71389215 72069680 + MGP_AJ_P0025680 Pcdh15 protein_coding protein_coding MGP_AJ_T0025681.1 MGP_AJ_G0017324.1 mouse_genomes_project 10 71389215 72069680 + MGP_AJ_P0025681 Pcdh15 protein_coding protein_coding MGP_AJ_T0025682.1 MGP_AJ_G0017324.1 mouse_genomes_project 10 71510031 72206805 + MGP_AJ_P0025682 Pcdh15 protein_coding protein_coding MGP_AJ_T0025683.1 MGP_AJ_G0017324.1 mouse_genomes_project 10 71510031 72204951 + MGP_AJ_P0025683 Pcdh15 protein_coding protein_coding MGP_AJ_T0025684.1 MGP_AJ_G0017324.1 mouse_genomes_project 10 71510031 72206901 + MGP_AJ_P0025684 Pcdh15 protein_coding protein_coding MGP_AJ_T0025685.1 MGP_AJ_G0017324.1 mouse_genomes_project 10 71863373 71893220 + Pcdh15 protein_coding processed_transcript MGP_AJ_T0025686.1 MGP_AJ_G0017324.1 mouse_genomes_project 10 71917357 72193400 + MGP_AJ_P0025686 Pcdh15 protein_coding protein_coding MGP_AJ_T0025687.1 MGP_AJ_G0017324.1 mouse_genomes_project 10 71948878 71959882 + Pcdh15 protein_coding retained_intron MGP_AJ_T0025688.1 MGP_AJ_G0017324.1 mouse_genomes_project 10 72146719 72185349 + Pcdh15 protein_coding retained_intron MGP_AJ_T0025689.1 MGP_AJ_G0017324.1 mouse_genomes_project 10 72191644 72206947 + Pcdh15 protein_coding processed_transcript MGP_AJ_T0025690.1 MGP_AJ_G0017324.1 mouse_genomes_project 10 72192141 72197413 + Pcdh15 protein_coding retained_intron MGP_AJ_T0025691.1 MGP_AJ_G0017324.1 mouse_genomes_project 10 72192566 72203097 + Pcdh15 protein_coding processed_transcript MGP_AJ_T0024361.1 MGP_AJ_G0016950.1 mouse_genomes_project 10 270950 370411 + MGP_AJ_P0024361 Ppp1r14c protein_coding protein_coding MGP_AJ_T0027166.1 MGP_AJ_G0017744.1 mouse_genomes_project 10 117452579 117493057 - MGP_AJ_P0027166 Cand1 protein_coding protein_coding MGP_AJ_T0027167.1 MGP_AJ_G0017744.1 mouse_genomes_project 10 117459653 117461540 - Cand1 protein_coding retained_intron MGP_AJ_T0027168.1 MGP_AJ_G0017744.1 mouse_genomes_project 10 117465110 117465941 - Cand1 protein_coding retained_intron MGP_AJ_T0027169.1 MGP_AJ_G0017744.1 mouse_genomes_project 10 117469810 117492305 - MGP_AJ_P0027169 Cand1 protein_coding protein_coding MGP_AJ_T0099289.1 MGP_AJ_G0037255.1 mouse_genomes_project 10 92297752 92297834 - Gm26122 snRNA snRNA MGP_AJ_T0026020.1 MGP_AJ_G0017426.1 mouse_genomes_project 10 77369072 77389028 - MGP_AJ_P0026020 Shc2 protein_coding protein_coding MGP_AJ_T0026021.1 MGP_AJ_G0017426.1 mouse_genomes_project 10 77369229 77373903 - Shc2 protein_coding retained_intron MGP_AJ_T0026022.1 MGP_AJ_G0017426.1 mouse_genomes_project 10 77371269 77374259 - Shc2 protein_coding retained_intron MGP_AJ_T0024594.1 MGP_AJ_G0017001.1 mouse_genomes_project 10 10527993 10557289 - MGP_AJ_P0024594 Pex3 protein_coding protein_coding MGP_AJ_T0024595.1 MGP_AJ_G0017001.1 mouse_genomes_project 10 10529036 10557045 - MGP_AJ_P0024595 Pex3 protein_coding protein_coding MGP_AJ_T0024596.1 MGP_AJ_G0017001.1 mouse_genomes_project 10 10533118 10540113 - Pex3 protein_coding retained_intron MGP_AJ_T0024597.1 MGP_AJ_G0017001.1 mouse_genomes_project 10 10535417 10557011 - Pex3 protein_coding processed_transcript MGP_AJ_T0024598.1 MGP_AJ_G0017001.1 mouse_genomes_project 10 10539878 10556966 - Pex3 protein_coding processed_transcript MGP_AJ_T0027393.1 MGP_AJ_G0017817.1 mouse_genomes_project 10 126297279 126310716 + MGP_AJ_P0027393 Sdr9c7 protein_coding protein_coding MGP_AJ_T0027394.1 MGP_AJ_G0017817.1 mouse_genomes_project 10 126297536 126310705 + Sdr9c7 protein_coding processed_transcript MGP_AJ_T0027395.1 MGP_AJ_G0017817.1 mouse_genomes_project 10 126300814 126309341 + Sdr9c7 protein_coding processed_transcript MGP_AJ_T0027396.1 MGP_AJ_G0017817.1 mouse_genomes_project 10 126302166 126309292 + Sdr9c7 protein_coding processed_transcript MGP_AJ_T0026086.1 MGP_AJ_G0017443.1 mouse_genomes_project 10 77629669 77638231 + Prtn3 protein_coding processed_transcript MGP_AJ_T0026087.1 MGP_AJ_G0017443.1 mouse_genomes_project 10 77634803 77638364 + MGP_AJ_P0026087 Prtn3 protein_coding protein_coding MGP_AJ_T0026088.1 MGP_AJ_G0017443.1 mouse_genomes_project 10 77636169 77638364 + Prtn3 protein_coding retained_intron MGP_AJ_T0026089.1 MGP_AJ_G0017443.1 mouse_genomes_project 10 77636193 77637579 + Prtn3 protein_coding retained_intron MGP_AJ_T0026090.1 MGP_AJ_G0017443.1 mouse_genomes_project 10 77636231 77638034 + MGP_AJ_P0026090 Prtn3 protein_coding protein_coding MGP_AJ_T0026091.1 MGP_AJ_G0017443.1 mouse_genomes_project 10 77636972 77638070 + Prtn3 protein_coding retained_intron MGP_AJ_T0026059.1 MGP_AJ_G0017440.1 mouse_genomes_project 10 77575084 77584423 + MGP_AJ_P0026059 Misp protein_coding protein_coding MGP_AJ_T0026060.1 MGP_AJ_G0017440.1 mouse_genomes_project 10 77576690 77584423 + MGP_AJ_P0026060 Misp protein_coding protein_coding MGP_AJ_T0024888.1 MGP_AJ_G0017105.1 mouse_genomes_project 10 31334947 31362640 + MGP_AJ_P0024888 Sult3a1 protein_coding unknown_likely_coding MGP_AJ_T0003062.1 MGP_AJ_G0002856.1 mouse_genomes_project 10 79105304 79106521 - Gm16315 antisense antisense MGP_AJ_T0026103.1 MGP_AJ_G0017448.1 mouse_genomes_project 10 77665941 77666226 + MGP_AJ_P0026103 Gm26602 protein_coding protein_coding MGP_AJ_T0025887.1 MGP_AJ_G0017377.1 mouse_genomes_project 10 75228139 75264084 + MGP_AJ_P0025887 Sumo3 protein_coding nonsense_mediated_decay MGP_AJ_T0025888.1 MGP_AJ_G0017377.1 mouse_genomes_project 10 75228151 75238394 + MGP_AJ_P0025888 Sumo3 protein_coding nonsense_mediated_decay MGP_AJ_T0025889.1 MGP_AJ_G0017377.1 mouse_genomes_project 10 75228167 75238327 + MGP_AJ_P0025889 Sumo3 protein_coding protein_coding MGP_AJ_T0025890.1 MGP_AJ_G0017377.1 mouse_genomes_project 10 75228167 75237991 + MGP_AJ_P0025890 Sumo3 protein_coding protein_coding MGP_AJ_T0025891.1 MGP_AJ_G0017377.1 mouse_genomes_project 10 75228263 75240019 + MGP_AJ_P0025891 Sumo3 protein_coding protein_coding MGP_AJ_T0025892.1 MGP_AJ_G0017377.1 mouse_genomes_project 10 75228513 75239106 + MGP_AJ_P0025892 Sumo3 protein_coding protein_coding MGP_AJ_T0025893.1 MGP_AJ_G0017377.1 mouse_genomes_project 10 75231584 75238582 + MGP_AJ_P0025893 Sumo3 protein_coding protein_coding MGP_AJ_T0025894.1 MGP_AJ_G0017377.1 mouse_genomes_project 10 75236816 75237744 + Sumo3 protein_coding processed_transcript MGP_AJ_T0024763.1 MGP_AJ_G0017054.1 mouse_genomes_project 10 21212357 21213471 + MGP_AJ_P0024763 Taar1 protein_coding protein_coding MGP_AJ_T0006166.1 MGP_AJ_G0005146.1 mouse_genomes_project 10 126651239 126657539 - lincRNA lincRNA MGP_AJ_T0006071.1 MGP_AJ_G0005082.1 mouse_genomes_project 10 6991494 7137321 + Gm28905 lincRNA lincRNA MGP_AJ_T0024722.1 MGP_AJ_G0017040.1 mouse_genomes_project 10 18669918 18699829 + MGP_AJ_P0024722 1700020N01Rik protein_coding protein_coding MGP_AJ_T0024723.1 MGP_AJ_G0017040.1 mouse_genomes_project 10 18693180 18699218 + 1700020N01Rik protein_coding processed_transcript MGP_AJ_T0026925.1 MGP_AJ_G0017650.1 mouse_genomes_project 10 93692790 93710180 - MGP_AJ_P0026925 Nudt4 protein_coding protein_coding MGP_AJ_T0026416.1 MGP_AJ_G0017529.1 mouse_genomes_project 10 79132356 79138737 + MGP_AJ_P0026416 Tbxa2r protein_coding protein_coding MGP_AJ_T0003042.1 MGP_AJ_G0002840.1 mouse_genomes_project 10 65546411 65547044 - antisense antisense MGP_AJ_T0026766.1 MGP_AJ_G0017617.1 mouse_genomes_project 10 87728955 87776516 - MGP_AJ_P0026766 Scyl2 protein_coding protein_coding MGP_AJ_T0026767.1 MGP_AJ_G0017617.1 mouse_genomes_project 10 87729847 87744631 - Scyl2 protein_coding processed_transcript MGP_AJ_T0026768.1 MGP_AJ_G0017617.1 mouse_genomes_project 10 87730130 87776499 - MGP_AJ_P0026768 Scyl2 protein_coding protein_coding MGP_AJ_T0026769.1 MGP_AJ_G0017617.1 mouse_genomes_project 10 87739911 87744335 - Scyl2 protein_coding retained_intron MGP_AJ_T0026770.1 MGP_AJ_G0017617.1 mouse_genomes_project 10 87740909 87750302 - MGP_AJ_P0026770 Scyl2 protein_coding protein_coding MGP_AJ_T0026771.1 MGP_AJ_G0017617.1 mouse_genomes_project 10 87757544 87776499 - Scyl2 protein_coding retained_intron MGP_AJ_T0026772.1 MGP_AJ_G0017617.1 mouse_genomes_project 10 87765952 87776494 - Scyl2 protein_coding retained_intron MGP_AJ_T0027548.1 MGP_AJ_G0017875.1 mouse_genomes_project 10 127770890 127781334 + MGP_AJ_P0027548 Olfr774 protein_coding protein_coding MGP_AJ_T0006158.1 MGP_AJ_G0005141.1 mouse_genomes_project 10 114913944 114920054 - 1700030O20Rik lincRNA lincRNA MGP_AJ_T0026644.1 MGP_AJ_G0017586.1 mouse_genomes_project 10 84009484 84061992 - MGP_AJ_P0026644 Bpifc protein_coding protein_coding MGP_AJ_T0026645.1 MGP_AJ_G0017586.1 mouse_genomes_project 10 84045999 84061953 - MGP_AJ_P0026645 Bpifc protein_coding protein_coding MGP_AJ_T0017115.1 MGP_AJ_G0015109.1 mouse_genomes_project 10 39093423 39101884 + 5730435O14Rik processed_transcript antisense MGP_AJ_T0017116.1 MGP_AJ_G0015109.1 mouse_genomes_project 10 39100971 39101873 + 5730435O14Rik processed_transcript retained_intron MGP_AJ_T0009634.1 MGP_AJ_G0007756.1 mouse_genomes_project 10 121275742 121275827 - Mirlet7i miRNA miRNA MGP_AJ_T0026537.1 MGP_AJ_G0017552.1 mouse_genomes_project 10 80096050 80112494 - MGP_AJ_P0026537 Zfp938 protein_coding protein_coding MGP_AJ_T0026538.1 MGP_AJ_G0017552.1 mouse_genomes_project 10 80096054 80112501 - MGP_AJ_P0026538 Zfp938 protein_coding nonsense_mediated_decay MGP_AJ_T0099272.1 MGP_AJ_G0037238.1 mouse_genomes_project 10 63686214 63686320 - Gm22829 snRNA snRNA MGP_AJ_T0026561.1 MGP_AJ_G0017559.1 mouse_genomes_project 10 80632230 80645138 + Hcfc2 protein_coding processed_transcript MGP_AJ_T0026562.1 MGP_AJ_G0017559.1 mouse_genomes_project 10 80635087 80678114 + MGP_AJ_P0026562 Hcfc2 protein_coding protein_coding MGP_AJ_T0026563.1 MGP_AJ_G0017559.1 mouse_genomes_project 10 80635291 80648311 + MGP_AJ_P0026563 Hcfc2 protein_coding nonsense_mediated_decay MGP_AJ_T0026564.1 MGP_AJ_G0017559.1 mouse_genomes_project 10 80664081 80677098 + MGP_AJ_P0026564 Hcfc2 protein_coding protein_coding MGP_AJ_T0026952.1 MGP_AJ_G0017668.1 mouse_genomes_project 10 98165568 98251097 + MGP_AJ_P0026952 Kitl protein_coding protein_coding MGP_AJ_T0026953.1 MGP_AJ_G0017668.1 mouse_genomes_project 10 98165764 98227588 + MGP_AJ_P0026953 Kitl protein_coding protein_coding MGP_AJ_T0026954.1 MGP_AJ_G0017668.1 mouse_genomes_project 10 98165854 98247078 + MGP_AJ_P0026954 Kitl protein_coding protein_coding MGP_AJ_T0024816.1 MGP_AJ_G0017079.1 mouse_genomes_project 10 23531797 23575967 + MGP_AJ_P0024816 Samd3 protein_coding protein_coding MGP_AJ_T0024817.1 MGP_AJ_G0017079.1 mouse_genomes_project 10 23531797 23563680 + MGP_AJ_P0024817 Samd3 protein_coding protein_coding MGP_AJ_T0012445.1 MGP_AJ_G0010540.1 mouse_genomes_project 10 115636561 115637069 + processed_pseudogene processed_pseudogene MGP_AJ_T0026317.1 MGP_AJ_G0017499.1 mouse_genomes_project 10 78600142 78603532 - MGP_AJ_P0026317 Jsrp1 protein_coding protein_coding MGP_AJ_T0026318.1 MGP_AJ_G0017499.1 mouse_genomes_project 10 78600144 78605139 - MGP_AJ_P0026318 Jsrp1 protein_coding protein_coding MGP_AJ_T0026319.1 MGP_AJ_G0017499.1 mouse_genomes_project 10 78600147 78605142 - MGP_AJ_P0026319 Jsrp1 protein_coding nonsense_mediated_decay MGP_AJ_T0026320.1 MGP_AJ_G0017499.1 mouse_genomes_project 10 78601829 78605145 - MGP_AJ_P0026320 Jsrp1 protein_coding protein_coding MGP_AJ_T0003105.1 MGP_AJ_G0002887.1 mouse_genomes_project 10 126042596 126047713 - Gm16230 antisense antisense MGP_AJ_T0026672.1 MGP_AJ_G0017595.1 mouse_genomes_project 10 84916397 85094539 - MGP_AJ_P0026672 Stab2 protein_coding protein_coding MGP_AJ_T0026673.1 MGP_AJ_G0017595.1 mouse_genomes_project 10 84916520 84969612 - MGP_AJ_P0026673 Stab2 protein_coding nonsense_mediated_decay MGP_AJ_T0026674.1 MGP_AJ_G0017595.1 mouse_genomes_project 10 84947410 84956674 - Stab2 protein_coding retained_intron MGP_AJ_T0026675.1 MGP_AJ_G0017595.1 mouse_genomes_project 10 84949379 84963757 - Stab2 protein_coding retained_intron MGP_AJ_T0026676.1 MGP_AJ_G0017595.1 mouse_genomes_project 10 85001372 85023147 - Stab2 protein_coding processed_transcript MGP_AJ_T0026677.1 MGP_AJ_G0017595.1 mouse_genomes_project 10 85075548 85094526 - Stab2 protein_coding processed_transcript MGP_AJ_T0026678.1 MGP_AJ_G0017595.1 mouse_genomes_project 10 85077240 85094536 - Stab2 protein_coding processed_transcript MGP_AJ_T0099262.1 MGP_AJ_G0037228.1 mouse_genomes_project 10 44470855 44471017 - Gm25650 snRNA snRNA MGP_AJ_T0100530.1 MGP_AJ_G0038496.1 mouse_genomes_project 10 63987525 63987655 + Gm22594 snoRNA snoRNA MGP_AJ_T0027585.1 MGP_AJ_G0017901.1 mouse_genomes_project 10 128291992 128296422 + MGP_AJ_P0027585 protein_coding protein_coding MGP_AJ_T0009599.1 MGP_AJ_G0007721.1 mouse_genomes_project 10 76148726 76148789 - Mir6908 miRNA miRNA MGP_AJ_T0025758.1 MGP_AJ_G0017340.1 mouse_genomes_project 10 73350580 73360073 - MGP_AJ_P0025758 Gm20441 protein_coding protein_coding MGP_AJ_T0024484.1 MGP_AJ_G0016975.1 mouse_genomes_project 10 4658700 4694110 + MGP_AJ_P0024484 Lats1 protein_coding protein_coding MGP_AJ_T0024485.1 MGP_AJ_G0016975.1 mouse_genomes_project 10 4668732 4691240 + MGP_AJ_P0024485 Lats1 protein_coding protein_coding MGP_AJ_T0026761.1 MGP_AJ_G0017615.1 mouse_genomes_project 10 87524254 87575870 - MGP_AJ_P0026761 Nr1h4 protein_coding protein_coding MGP_AJ_T0026762.1 MGP_AJ_G0017615.1 mouse_genomes_project 10 87524254 87575861 - MGP_AJ_P0026762 Nr1h4 protein_coding protein_coding MGP_AJ_T0026763.1 MGP_AJ_G0017615.1 mouse_genomes_project 10 87524393 87603383 - MGP_AJ_P0026763 Nr1h4 protein_coding protein_coding MGP_AJ_T0003052.1 MGP_AJ_G0002849.1 mouse_genomes_project 10 74159176 74164696 - Gm15343 antisense antisense MGP_AJ_T0025970.1 MGP_AJ_G0017399.1 mouse_genomes_project 10 76104231 76116880 - MGP_AJ_P0025970 Rrp1 protein_coding protein_coding MGP_AJ_T0024741.1 MGP_AJ_G0017045.1 mouse_genomes_project 10 19516962 19535968 + MGP_AJ_P0024741 protein_coding protein_coding MGP_AJ_T0024743.1 MGP_AJ_G0017045.1 mouse_genomes_project 10 19519055 19535968 + MGP_AJ_P0024743 protein_coding protein_coding MGP_AJ_T0025141.1 MGP_AJ_G0017190.1 mouse_genomes_project 10 49108896 49139766 + MGP_AJ_P0025141 Lilrb4a protein_coding protein_coding MGP_AJ_T0025142.1 MGP_AJ_G0017190.1 mouse_genomes_project 10 49108896 49139766 + MGP_AJ_P0025142 Lilrb4a protein_coding protein_coding MGP_AJ_T0025144.1 MGP_AJ_G0017190.1 mouse_genomes_project 10 49108976 49118798 + MGP_AJ_P0025144 Lilrb4a protein_coding unknown_likely_coding MGP_AJ_T0025145.1 MGP_AJ_G0017190.1 mouse_genomes_project 10 49117006 49139766 + MGP_AJ_P0025145 Lilrb4a protein_coding protein_coding MGP_AJ_T0012434.1 MGP_AJ_G0010529.1 mouse_genomes_project 10 78748066 78748323 - processed_pseudogene processed_pseudogene MGP_AJ_T0027521.1 MGP_AJ_G0017862.1 mouse_genomes_project 10 127337361 127346748 - MGP_AJ_P0027521 Gdf11 protein_coding protein_coding MGP_AJ_T0006144.1 MGP_AJ_G0005130.1 mouse_genomes_project 10 92010385 92015072 + 4930471D02Rik lincRNA lincRNA MGP_AJ_T0024818.1 MGP_AJ_G0017080.1 mouse_genomes_project 10 23578262 23679439 - MGP_AJ_P0024818 L3mbtl3 protein_coding protein_coding MGP_AJ_T0024819.1 MGP_AJ_G0017080.1 mouse_genomes_project 10 23578265 23679439 - MGP_AJ_P0024819 L3mbtl3 protein_coding protein_coding MGP_AJ_T0024820.1 MGP_AJ_G0017080.1 mouse_genomes_project 10 23579246 23680670 - MGP_AJ_P0024820 L3mbtl3 protein_coding protein_coding MGP_AJ_T0026622.1 MGP_AJ_G0017580.1 mouse_genomes_project 10 83293594 83294445 + MGP_AJ_P0026622 Gm8394 protein_coding protein_coding MGP_AJ_T0098524.1 MGP_AJ_G0036508.1 mouse_genomes_project 10 28684637 28684750 - n-R5s76 rRNA rRNA MGP_AJ_T0025770.1 MGP_AJ_G0017345.1 mouse_genomes_project 10 73440483 73441381 - MGP_AJ_P0025770 Mif protein_coding protein_coding MGP_AJ_T0026217.1 MGP_AJ_G0017472.1 mouse_genomes_project 10 78061414 78084624 + MGP_AJ_P0026217 Apc2 protein_coding protein_coding MGP_AJ_T0026218.1 MGP_AJ_G0017472.1 mouse_genomes_project 10 78064557 78067832 + MGP_AJ_P0026218 Apc2 protein_coding protein_coding MGP_AJ_T0026219.1 MGP_AJ_G0017472.1 mouse_genomes_project 10 78066313 78068826 + Apc2 protein_coding retained_intron MGP_AJ_T0026220.1 MGP_AJ_G0017472.1 mouse_genomes_project 10 78066500 78067818 + MGP_AJ_P0026220 Apc2 protein_coding protein_coding MGP_AJ_T0026221.1 MGP_AJ_G0017472.1 mouse_genomes_project 10 78066501 78067877 + MGP_AJ_P0026221 Apc2 protein_coding protein_coding MGP_AJ_T0026222.1 MGP_AJ_G0017472.1 mouse_genomes_project 10 78067290 78084617 + MGP_AJ_P0026222 Apc2 protein_coding protein_coding MGP_AJ_T0025287.1 MGP_AJ_G0017242.1 mouse_genomes_project 10 57471503 57572075 + MGP_AJ_P0025287 Ascc1 protein_coding protein_coding MGP_AJ_T0025288.1 MGP_AJ_G0017242.1 mouse_genomes_project 10 57472025 57572075 + MGP_AJ_P0025288 Ascc1 protein_coding protein_coding MGP_AJ_T0009639.1 MGP_AJ_G0007761.1 mouse_genomes_project 10 125342667 125342788 + Mir546 miRNA miRNA MGP_AJ_T0025812.1 MGP_AJ_G0017362.1 mouse_genomes_project 10 74126023 74129982 + Lss protein_coding processed_transcript MGP_AJ_T0025813.1 MGP_AJ_G0017362.1 mouse_genomes_project 10 74126042 74143281 + Lss protein_coding retained_intron MGP_AJ_T0025814.1 MGP_AJ_G0017362.1 mouse_genomes_project 10 74126042 74149892 + MGP_AJ_P0025814 Lss protein_coding protein_coding MGP_AJ_T0025815.1 MGP_AJ_G0017362.1 mouse_genomes_project 10 74126047 74151551 + Lss protein_coding retained_intron MGP_AJ_T0025816.1 MGP_AJ_G0017362.1 mouse_genomes_project 10 74126117 74130137 + Lss protein_coding retained_intron MGP_AJ_T0025817.1 MGP_AJ_G0017362.1 mouse_genomes_project 10 74136294 74137159 + MGP_AJ_P0025817 Lss protein_coding protein_coding MGP_AJ_T0025818.1 MGP_AJ_G0017362.1 mouse_genomes_project 10 74145622 74151031 + Lss protein_coding retained_intron MGP_AJ_T0025819.1 MGP_AJ_G0017362.1 mouse_genomes_project 10 74146683 74147646 + Lss protein_coding retained_intron MGP_AJ_T0026539.1 MGP_AJ_G0017553.1 mouse_genomes_project 10 80157854 80160999 - MGP_AJ_P0026539 4932415D10Rik protein_coding protein_coding MGP_AJ_T0024554.1 MGP_AJ_G0016995.1 mouse_genomes_project 10 9999254 10003083 + MGP_AJ_P0024554 Sf3b5 protein_coding protein_coding MGP_AJ_T0006112.1 MGP_AJ_G0005114.1 mouse_genomes_project 10 75106288 75135733 + 2810425M01Rik lincRNA lincRNA MGP_AJ_T0026498.1 MGP_AJ_G0017545.1 mouse_genomes_project 10 79397989 79404673 - Tle6 protein_coding processed_transcript MGP_AJ_T0026499.1 MGP_AJ_G0017545.1 mouse_genomes_project 10 79397989 79407958 - MGP_AJ_P0026499 Tle6 protein_coding protein_coding MGP_AJ_T0026500.1 MGP_AJ_G0017545.1 mouse_genomes_project 10 79397990 79402501 - Tle6 protein_coding retained_intron MGP_AJ_T0026501.1 MGP_AJ_G0017545.1 mouse_genomes_project 10 79397990 79399801 - Tle6 protein_coding processed_transcript MGP_AJ_T0026502.1 MGP_AJ_G0017545.1 mouse_genomes_project 10 79397990 79407983 - MGP_AJ_P0026502 Tle6 protein_coding protein_coding MGP_AJ_T0026503.1 MGP_AJ_G0017545.1 mouse_genomes_project 10 79397992 79404428 - Tle6 protein_coding processed_transcript MGP_AJ_T0026504.1 MGP_AJ_G0017545.1 mouse_genomes_project 10 79398218 79399904 - Tle6 protein_coding retained_intron MGP_AJ_T0026505.1 MGP_AJ_G0017545.1 mouse_genomes_project 10 79401004 79402330 - Tle6 protein_coding retained_intron MGP_AJ_T0026506.1 MGP_AJ_G0017545.1 mouse_genomes_project 10 79401324 79402894 - Tle6 protein_coding retained_intron MGP_AJ_T0026507.1 MGP_AJ_G0017545.1 mouse_genomes_project 10 79402294 79404421 - Tle6 protein_coding processed_transcript MGP_AJ_T0026508.1 MGP_AJ_G0017545.1 mouse_genomes_project 10 79402314 79404414 - Tle6 protein_coding processed_transcript MGP_AJ_T0026509.1 MGP_AJ_G0017545.1 mouse_genomes_project 10 79403038 79404450 - Tle6 protein_coding processed_transcript MGP_AJ_T0026510.1 MGP_AJ_G0017545.1 mouse_genomes_project 10 79403078 79407940 - MGP_AJ_P0026510 Tle6 protein_coding protein_coding MGP_AJ_T0026511.1 MGP_AJ_G0017545.1 mouse_genomes_project 10 79403081 79408156 - MGP_AJ_P0026511 Tle6 protein_coding protein_coding MGP_AJ_T0026696.1 MGP_AJ_G0017601.1 mouse_genomes_project 10 86159419 86207150 - MGP_AJ_P0026696 Parpbp protein_coding protein_coding MGP_AJ_T0026697.1 MGP_AJ_G0017601.1 mouse_genomes_project 10 86187395 86207087 - MGP_AJ_P0026697 Parpbp protein_coding protein_coding MGP_AJ_T0026698.1 MGP_AJ_G0017601.1 mouse_genomes_project 10 86187415 86207142 - MGP_AJ_P0026698 Parpbp protein_coding protein_coding MGP_AJ_T0026699.1 MGP_AJ_G0017601.1 mouse_genomes_project 10 86193607 86207087 - MGP_AJ_P0026699 Parpbp protein_coding protein_coding MGP_AJ_T0027453.1 MGP_AJ_G0017833.1 mouse_genomes_project 10 126728435 126746245 + MGP_AJ_P0027453 Pan2 protein_coding unknown_likely_coding MGP_AJ_T0027454.1 MGP_AJ_G0017833.1 mouse_genomes_project 10 126728439 126746251 + MGP_AJ_P0027454 Pan2 protein_coding protein_coding MGP_AJ_T0025947.1 MGP_AJ_G0017393.1 mouse_genomes_project 10 75734009 75737952 + Dnmt3l protein_coding processed_transcript MGP_AJ_T0025948.1 MGP_AJ_G0017393.1 mouse_genomes_project 10 75734349 75758464 + MGP_AJ_P0025948 Dnmt3l protein_coding protein_coding MGP_AJ_T0025949.1 MGP_AJ_G0017393.1 mouse_genomes_project 10 75744692 75758464 + MGP_AJ_P0025949 Dnmt3l protein_coding protein_coding MGP_AJ_T0025950.1 MGP_AJ_G0017393.1 mouse_genomes_project 10 75744809 75758458 + MGP_AJ_P0025950 Dnmt3l protein_coding protein_coding MGP_AJ_T0025951.1 MGP_AJ_G0017393.1 mouse_genomes_project 10 75749685 75752224 + Dnmt3l protein_coding retained_intron MGP_AJ_T0025952.1 MGP_AJ_G0017393.1 mouse_genomes_project 10 75750185 75758457 + MGP_AJ_P0025952 Dnmt3l protein_coding protein_coding MGP_AJ_T0025953.1 MGP_AJ_G0017393.1 mouse_genomes_project 10 75750185 75758457 + MGP_AJ_P0025953 Dnmt3l protein_coding protein_coding MGP_AJ_T0025954.1 MGP_AJ_G0017393.1 mouse_genomes_project 10 75750185 75758457 + MGP_AJ_P0025954 Dnmt3l protein_coding protein_coding MGP_AJ_T0027263.1 MGP_AJ_G0017774.1 mouse_genomes_project 10 125355625 125374829 - MGP_AJ_P0027263 Tsfm protein_coding protein_coding MGP_AJ_T0027264.1 MGP_AJ_G0017774.1 mouse_genomes_project 10 125366358 125374866 - MGP_AJ_P0027264 Tsfm protein_coding protein_coding MGP_AJ_T0027265.1 MGP_AJ_G0017774.1 mouse_genomes_project 10 125366473 125369123 - Tsfm protein_coding retained_intron MGP_AJ_T0027266.1 MGP_AJ_G0017774.1 mouse_genomes_project 10 125366651 125374417 - Tsfm protein_coding processed_transcript MGP_AJ_T0027267.1 MGP_AJ_G0017774.1 mouse_genomes_project 10 125366933 125374785 - Tsfm protein_coding retained_intron MGP_AJ_T0027268.1 MGP_AJ_G0017774.1 mouse_genomes_project 10 125368260 125374825 - MGP_AJ_P0027268 Tsfm protein_coding protein_coding MGP_AJ_T0027269.1 MGP_AJ_G0017774.1 mouse_genomes_project 10 125373247 125374829 - Tsfm protein_coding retained_intron MGP_AJ_T0026587.1 MGP_AJ_G0017567.1 mouse_genomes_project 10 81504444 81557519 + MGP_AJ_P0026587 A230046K03Rik protein_coding protein_coding MGP_AJ_T0024631.1 MGP_AJ_G0017010.1 mouse_genomes_project 10 14830973 14842635 + Txlnb protein_coding retained_intron MGP_AJ_T0024632.1 MGP_AJ_G0017010.1 mouse_genomes_project 10 14831003 14889049 + MGP_AJ_P0024632 Txlnb protein_coding protein_coding MGP_AJ_T0026962.1 MGP_AJ_G0017671.1 mouse_genomes_project 10 98722060 98739100 - MGP_AJ_P0026962 4930430F08Rik protein_coding protein_coding MGP_AJ_T0017119.1 MGP_AJ_G0015111.1 mouse_genomes_project 10 67743839 67755133 + Mrln processed_transcript lincRNA MGP_AJ_T0017120.1 MGP_AJ_G0015111.1 mouse_genomes_project 10 67743842 67759559 + Mrln processed_transcript lincRNA MGP_AJ_T0017121.1 MGP_AJ_G0015111.1 mouse_genomes_project 10 67743885 67759428 + Mrln processed_transcript lincRNA MGP_AJ_T0017122.1 MGP_AJ_G0015111.1 mouse_genomes_project 10 67743900 67750122 + Mrln processed_transcript lincRNA MGP_AJ_T0017123.1 MGP_AJ_G0015111.1 mouse_genomes_project 10 67756744 67759558 + Mrln processed_transcript retained_intron MGP_AJ_T0012381.1 MGP_AJ_G0010476.1 mouse_genomes_project 10 781252 781561 - processed_pseudogene processed_pseudogene MGP_AJ_T0099263.1 MGP_AJ_G0037229.1 mouse_genomes_project 10 46219564 46219648 - Gm24256 snRNA snRNA MGP_AJ_T0024600.1 MGP_AJ_G0017003.1 mouse_genomes_project 10 10647258 10872946 - MGP_AJ_P0024600 Aig1 protein_coding protein_coding MGP_AJ_T0024601.1 MGP_AJ_G0017003.1 mouse_genomes_project 10 10647873 10872788 - MGP_AJ_P0024601 Aig1 protein_coding protein_coding MGP_AJ_T0024602.1 MGP_AJ_G0017003.1 mouse_genomes_project 10 10652616 10872923 - MGP_AJ_P0024602 Aig1 protein_coding protein_coding MGP_AJ_T0024603.1 MGP_AJ_G0017003.1 mouse_genomes_project 10 10653753 10847687 - Aig1 protein_coding processed_transcript MGP_AJ_T0024604.1 MGP_AJ_G0017003.1 mouse_genomes_project 10 10801795 10865293 - Aig1 protein_coding retained_intron MGP_AJ_T0024605.1 MGP_AJ_G0017003.1 mouse_genomes_project 10 10829735 10872942 - Aig1 protein_coding retained_intron MGP_AJ_T0024606.1 MGP_AJ_G0017003.1 mouse_genomes_project 10 10832532 10872795 - Aig1 protein_coding processed_transcript MGP_AJ_T0025986.1 MGP_AJ_G0017412.1 mouse_genomes_project 10 76658610 76662257 + MGP_AJ_P0025986 protein_coding protein_coding MGP_AJ_T0012400.1 MGP_AJ_G0010495.1 mouse_genomes_project 10 23141721 23142331 - processed_pseudogene processed_pseudogene MGP_AJ_T0003064.1 MGP_AJ_G0002858.1 mouse_genomes_project 10 79266574 79268388 + Gm16105 antisense antisense MGP_AJ_T0027000.1 MGP_AJ_G0017680.1 mouse_genomes_project 10 103874101 103946113 - MGP_AJ_P0027000 Mettl25 protein_coding protein_coding MGP_AJ_T0027001.1 MGP_AJ_G0017680.1 mouse_genomes_project 10 103874167 103946115 - MGP_AJ_P0027001 Mettl25 protein_coding nonsense_mediated_decay MGP_AJ_T0027002.1 MGP_AJ_G0017680.1 mouse_genomes_project 10 103931307 103946106 - MGP_AJ_P0027002 Mettl25 protein_coding nonsense_mediated_decay MGP_AJ_T0027003.1 MGP_AJ_G0017680.1 mouse_genomes_project 10 103943939 103945946 - Mettl25 protein_coding processed_transcript MGP_AJ_T0027384.1 MGP_AJ_G0017810.1 mouse_genomes_project 10 126132932 126143780 + MGP_AJ_P0027384 protein_coding protein_coding MGP_AJ_T0027157.1 MGP_AJ_G0017739.1 mouse_genomes_project 10 116040280 116072221 - MGP_AJ_P0027157 Rap1b protein_coding protein_coding MGP_AJ_T0026121.1 MGP_AJ_G0017455.1 mouse_genomes_project 10 77752490 77772649 + MGP_AJ_P0026121 Abca7 protein_coding protein_coding MGP_AJ_T0026122.1 MGP_AJ_G0017455.1 mouse_genomes_project 10 77752506 77772653 + MGP_AJ_P0026122 Abca7 protein_coding unknown_likely_coding MGP_AJ_T0026123.1 MGP_AJ_G0017455.1 mouse_genomes_project 10 77753572 77772630 + MGP_AJ_P0026123 Abca7 protein_coding protein_coding MGP_AJ_T0026124.1 MGP_AJ_G0017455.1 mouse_genomes_project 10 77753611 77772645 + MGP_AJ_P0026124 Abca7 protein_coding protein_coding MGP_AJ_T0026851.1 MGP_AJ_G0017629.1 mouse_genomes_project 10 91565412 91599375 + MGP_AJ_P0026851 Lta4h protein_coding protein_coding MGP_AJ_T0006122.1 MGP_AJ_G0005121.1 mouse_genomes_project 10 82520406 82526357 - Platr7 lincRNA lincRNA MGP_AJ_T0009572.1 MGP_AJ_G0007694.1 mouse_genomes_project 10 8910744 8910831 + Gm22194 miRNA miRNA MGP_AJ_T0099254.1 MGP_AJ_G0037220.1 mouse_genomes_project 10 28524978 28525085 - Gm23790 snRNA snRNA MGP_AJ_T0025393.1 MGP_AJ_G0017271.1 mouse_genomes_project 10 59721652 59767996 - MGP_AJ_P0025393 Tspan15 protein_coding protein_coding MGP_AJ_T0000815.1 MGP_AJ_G0000751.1 mouse_genomes_project 10 37725611 37728836 - TEC TEC MGP_AJ_T0027207.1 MGP_AJ_G0017752.1 mouse_genomes_project 10 119069076 119187083 - MGP_AJ_P0027207 Msrb3 protein_coding protein_coding MGP_AJ_T0027208.1 MGP_AJ_G0017752.1 mouse_genomes_project 10 119071691 119140542 - Msrb3 protein_coding processed_transcript MGP_AJ_T0027209.1 MGP_AJ_G0017752.1 mouse_genomes_project 10 119071833 119161554 - MGP_AJ_P0027209 Msrb3 protein_coding protein_coding MGP_AJ_T0026272.1 MGP_AJ_G0017483.1 mouse_genomes_project 10 78292768 78325052 - MGP_AJ_P0026272 Atp8b3 protein_coding protein_coding MGP_AJ_T0026847.1 MGP_AJ_G0017628.1 mouse_genomes_project 10 91366696 91432995 - MGP_AJ_P0026847 Elk3 protein_coding protein_coding MGP_AJ_T0026848.1 MGP_AJ_G0017628.1 mouse_genomes_project 10 91368580 91432669 - MGP_AJ_P0026848 Elk3 protein_coding nonsense_mediated_decay MGP_AJ_T0026849.1 MGP_AJ_G0017628.1 mouse_genomes_project 10 91368580 91432829 - MGP_AJ_P0026849 Elk3 protein_coding protein_coding MGP_AJ_T0026850.1 MGP_AJ_G0017628.1 mouse_genomes_project 10 91405879 91432995 - Elk3 protein_coding retained_intron MGP_AJ_T0027520.1 MGP_AJ_G0017861.1 mouse_genomes_project 10 127278535 127332718 + MGP_AJ_P0027520 Sarnp protein_coding protein_coding MGP_AJ_T0026937.1 MGP_AJ_G0017659.1 mouse_genomes_project 10 95862896 95864764 + MGP_AJ_P0026937 Ccer1 protein_coding protein_coding MGP_AJ_T0006170.1 MGP_AJ_G0005150.1 mouse_genomes_project 10 127535405 127539683 - lincRNA lincRNA MGP_AJ_T0011274.1 MGP_AJ_G0009396.1 mouse_genomes_project 10 73010606 73010929 + Gm25545 misc_RNA misc_RNA MGP_AJ_T0024634.1 MGP_AJ_G0017012.1 mouse_genomes_project 10 15070903 15084829 - MGP_AJ_P0024634 Abracl protein_coding protein_coding MGP_AJ_T0003031.1 MGP_AJ_G0002831.1 mouse_genomes_project 10 40749773 40750480 + Gm29246 antisense antisense MGP_AJ_T0011266.1 MGP_AJ_G0009388.1 mouse_genomes_project 10 10086615 10086853 - Gm27741 misc_RNA misc_RNA MGP_AJ_T0006143.1 MGP_AJ_G0005129.1 mouse_genomes_project 10 90272306 90483898 - Gm20757 lincRNA lincRNA MGP_AJ_T0003011.1 MGP_AJ_G0002816.1 mouse_genomes_project 10 11677328 11681361 + Gm16234 antisense antisense MGP_AJ_T0003044.1 MGP_AJ_G0002842.1 mouse_genomes_project 10 68617701 68618477 + Gm15647 antisense antisense MGP_AJ_T0025031.1 MGP_AJ_G0017155.1 mouse_genomes_project 10 39152730 39177336 - MGP_AJ_P0025031 protein_coding protein_coding MGP_AJ_T0011286.1 MGP_AJ_G0009408.1 mouse_genomes_project 10 107181059 107181337 - Gm22097 misc_RNA misc_RNA MGP_AJ_T0025373.1 MGP_AJ_G0017267.1 mouse_genomes_project 10 59369408 59409561 - Col13a1 protein_coding processed_transcript MGP_AJ_T0025374.1 MGP_AJ_G0017267.1 mouse_genomes_project 10 59369408 59397584 - MGP_AJ_P0025374 Col13a1 protein_coding protein_coding MGP_AJ_T0025375.1 MGP_AJ_G0017267.1 mouse_genomes_project 10 59369408 59510132 - MGP_AJ_P0025375 Col13a1 protein_coding protein_coding MGP_AJ_T0025376.1 MGP_AJ_G0017267.1 mouse_genomes_project 10 59369408 59510097 - MGP_AJ_P0025376 Col13a1 protein_coding protein_coding MGP_AJ_T0025377.1 MGP_AJ_G0017267.1 mouse_genomes_project 10 59369408 59510097 - MGP_AJ_P0025377 Col13a1 protein_coding protein_coding MGP_AJ_T0025378.1 MGP_AJ_G0017267.1 mouse_genomes_project 10 59379902 59509145 - Col13a1 protein_coding retained_intron MGP_AJ_T0025379.1 MGP_AJ_G0017267.1 mouse_genomes_project 10 59380031 59382696 - Col13a1 protein_coding retained_intron MGP_AJ_T0025102.1 MGP_AJ_G0017174.1 mouse_genomes_project 10 41197396 41236558 + MGP_AJ_P0025102 F930017D23Rik protein_coding protein_coding MGP_AJ_T0026101.1 MGP_AJ_G0017447.1 mouse_genomes_project 10 77665138 77672014 - MGP_AJ_P0026101 R3hdm4 protein_coding protein_coding MGP_AJ_T0026102.1 MGP_AJ_G0017447.1 mouse_genomes_project 10 77665323 77672090 - MGP_AJ_P0026102 R3hdm4 protein_coding protein_coding MGP_AJ_T0026616.1 MGP_AJ_G0017575.1 mouse_genomes_project 10 82890811 82989533 + MGP_AJ_P0026616 Ric8b protein_coding protein_coding MGP_AJ_T0026617.1 MGP_AJ_G0017575.1 mouse_genomes_project 10 82890851 82989533 + MGP_AJ_P0026617 Ric8b protein_coding protein_coding MGP_AJ_T0006139.1 MGP_AJ_G0005128.1 mouse_genomes_project 10 90263155 90265724 + Gm26700 lincRNA lincRNA MGP_AJ_T0100533.1 MGP_AJ_G0038499.1 mouse_genomes_project 10 70125366 70125499 + Gm24984 snoRNA snoRNA MGP_AJ_T0025195.1 MGP_AJ_G0017214.1 mouse_genomes_project 10 55186953 55216638 + MGP_AJ_P0025195 Hsf2 protein_coding protein_coding MGP_AJ_T0024421.1 MGP_AJ_G0016967.1 mouse_genomes_project 10 3676069 3697317 - MGP_AJ_P0024421 Gm10945 protein_coding protein_coding MGP_AJ_T0026015.1 MGP_AJ_G0017424.1 mouse_genomes_project 10 77326663 77337414 - MGP_AJ_P0026015 Theg protein_coding protein_coding MGP_AJ_T0026016.1 MGP_AJ_G0017424.1 mouse_genomes_project 10 77326761 77330400 - Theg protein_coding retained_intron MGP_AJ_T0026017.1 MGP_AJ_G0017424.1 mouse_genomes_project 10 77326761 77337609 - MGP_AJ_P0026017 Theg protein_coding protein_coding MGP_AJ_T0024991.1 MGP_AJ_G0017147.1 mouse_genomes_project 10 38722495 38837474 - MGP_AJ_P0024991 Fig4 protein_coding protein_coding MGP_AJ_T0100542.1 MGP_AJ_G0038508.1 mouse_genomes_project 10 99702046 99702178 + Gm26278 snoRNA snoRNA MGP_AJ_T0027433.1 MGP_AJ_G0017827.1 mouse_genomes_project 10 126646243 126652464 + MGP_AJ_P0027433 Mip protein_coding protein_coding MGP_AJ_T0027082.1 MGP_AJ_G0017715.1 mouse_genomes_project 10 113627425 113763137 - MGP_AJ_P0027082 Lgr5 protein_coding protein_coding MGP_AJ_T0027083.1 MGP_AJ_G0017715.1 mouse_genomes_project 10 113629128 113762850 - MGP_AJ_P0027083 Lgr5 protein_coding protein_coding MGP_AJ_T0027084.1 MGP_AJ_G0017715.1 mouse_genomes_project 10 113629128 113762850 - MGP_AJ_P0027084 Lgr5 protein_coding protein_coding MGP_AJ_T0027085.1 MGP_AJ_G0017715.1 mouse_genomes_project 10 113633761 113636113 - Lgr5 protein_coding retained_intron MGP_AJ_T0027086.1 MGP_AJ_G0017715.1 mouse_genomes_project 10 113634958 113640100 - Lgr5 protein_coding retained_intron MGP_AJ_T0027087.1 MGP_AJ_G0017715.1 mouse_genomes_project 10 113639693 113763116 - Lgr5 protein_coding retained_intron MGP_AJ_T0027088.1 MGP_AJ_G0017715.1 mouse_genomes_project 10 113650386 113763116 - Lgr5 protein_coding retained_intron MGP_AJ_T0027089.1 MGP_AJ_G0017715.1 mouse_genomes_project 10 113700011 113763100 - Lgr5 protein_coding processed_transcript MGP_AJ_T0026923.1 MGP_AJ_G0017648.1 mouse_genomes_project 10 93623821 93644850 - MGP_AJ_P0026923 Mrpl42 protein_coding unknown_likely_coding MGP_AJ_T0027133.1 MGP_AJ_G0017734.1 mouse_genomes_project 10 115481561 115487232 - MGP_AJ_P0027133 protein_coding protein_coding MGP_AJ_T0027279.1 MGP_AJ_G0017778.1 mouse_genomes_project 10 125398987 125404117 - MGP_AJ_P0027279 March9 protein_coding protein_coding MGP_AJ_T0099294.1 MGP_AJ_G0037260.1 mouse_genomes_project 10 103150405 103150573 + Gm25587 snRNA snRNA MGP_AJ_T0026828.1 MGP_AJ_G0017624.1 mouse_genomes_project 10 89233022 89257037 - MGP_AJ_P0026828 Tmpo protein_coding protein_coding MGP_AJ_T0026829.1 MGP_AJ_G0017624.1 mouse_genomes_project 10 89233022 89257037 - MGP_AJ_P0026829 Tmpo protein_coding protein_coding MGP_AJ_T0026830.1 MGP_AJ_G0017624.1 mouse_genomes_project 10 89233022 89257037 - MGP_AJ_P0026830 Tmpo protein_coding protein_coding MGP_AJ_T0026831.1 MGP_AJ_G0017624.1 mouse_genomes_project 10 89233022 89257037 - MGP_AJ_P0026831 Tmpo protein_coding protein_coding MGP_AJ_T0026832.1 MGP_AJ_G0017624.1 mouse_genomes_project 10 89245872 89257037 - MGP_AJ_P0026832 Tmpo protein_coding protein_coding MGP_AJ_T0102217.1 MGP_AJ_G0039960.1 mouse_genomes_project 10 127572864 127573794 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0027206.1 MGP_AJ_G0017751.1 mouse_genomes_project 10 119053752 119066869 + MGP_AJ_P0027206 4921513I03Rik protein_coding protein_coding MGP_AJ_T0006118.1 MGP_AJ_G0005118.1 mouse_genomes_project 10 79413458 79416882 - Gm26896 lincRNA lincRNA MGP_AJ_T0000831.1 MGP_AJ_G0000766.1 mouse_genomes_project 10 112509739 112510054 + TEC TEC MGP_AJ_T0027450.1 MGP_AJ_G0017831.1 mouse_genomes_project 10 126692449 126714878 + MGP_AJ_P0027450 Stat2 protein_coding protein_coding MGP_AJ_T0027451.1 MGP_AJ_G0017831.1 mouse_genomes_project 10 126692449 126714878 + MGP_AJ_P0027451 Stat2 protein_coding protein_coding MGP_AJ_T0025278.1 MGP_AJ_G0017240.1 mouse_genomes_project 10 57413277 57415373 - MGP_AJ_P0025278 Ddit4 protein_coding protein_coding MGP_AJ_T0024736.1 MGP_AJ_G0017042.1 mouse_genomes_project 10 19111357 19115863 - MGP_AJ_P0024736 protein_coding protein_coding MGP_AJ_T0025607.1 MGP_AJ_G0017313.1 mouse_genomes_project 10 67633492 67728289 + MGP_AJ_P0025607 protein_coding unknown_likely_coding MGP_AJ_T0025608.1 MGP_AJ_G0017313.1 mouse_genomes_project 10 67712090 67719595 + protein_coding retained_intron MGP_AJ_T0025609.1 MGP_AJ_G0017313.1 mouse_genomes_project 10 67712592 67725562 + MGP_AJ_P0025609 protein_coding protein_coding MGP_AJ_T0025610.1 MGP_AJ_G0017313.1 mouse_genomes_project 10 67712628 67725576 + MGP_AJ_P0025610 protein_coding protein_coding MGP_AJ_T0026188.1 MGP_AJ_G0017467.1 mouse_genomes_project 10 77990668 78008147 + MGP_AJ_P0026188 Mum1 protein_coding protein_coding MGP_AJ_T0026189.1 MGP_AJ_G0017467.1 mouse_genomes_project 10 77990889 78008144 + Mum1 protein_coding retained_intron MGP_AJ_T0026190.1 MGP_AJ_G0017467.1 mouse_genomes_project 10 77990906 77996924 + MGP_AJ_P0026190 Mum1 protein_coding protein_coding MGP_AJ_T0026191.1 MGP_AJ_G0017467.1 mouse_genomes_project 10 77990914 78008142 + Mum1 protein_coding retained_intron MGP_AJ_T0026192.1 MGP_AJ_G0017467.1 mouse_genomes_project 10 77990985 77993406 + Mum1 protein_coding retained_intron MGP_AJ_T0026193.1 MGP_AJ_G0017467.1 mouse_genomes_project 10 77998437 78008147 + Mum1 protein_coding retained_intron MGP_AJ_T0026194.1 MGP_AJ_G0017467.1 mouse_genomes_project 10 77998438 78001358 + Mum1 protein_coding retained_intron MGP_AJ_T0026195.1 MGP_AJ_G0017467.1 mouse_genomes_project 10 77998503 78008145 + Mum1 protein_coding retained_intron MGP_AJ_T0026196.1 MGP_AJ_G0017467.1 mouse_genomes_project 10 78000354 78004636 + Mum1 protein_coding retained_intron MGP_AJ_T0026197.1 MGP_AJ_G0017467.1 mouse_genomes_project 10 78005781 78008144 + Mum1 protein_coding retained_intron MGP_AJ_T0026198.1 MGP_AJ_G0017467.1 mouse_genomes_project 10 78006855 78008144 + Mum1 protein_coding processed_transcript MGP_AJ_T0024752.1 MGP_AJ_G0017049.1 mouse_genomes_project 10 20397957 20646226 - MGP_AJ_P0024752 Eya4 protein_coding protein_coding MGP_AJ_T0024753.1 MGP_AJ_G0017049.1 mouse_genomes_project 10 20398552 20646218 - MGP_AJ_P0024753 Eya4 protein_coding protein_coding MGP_AJ_T0003048.1 MGP_AJ_G0002846.1 mouse_genomes_project 10 73884311 73886007 + Gm16240 antisense antisense MGP_AJ_T0012450.1 MGP_AJ_G0010545.1 mouse_genomes_project 10 125658391 125659391 + processed_pseudogene processed_pseudogene MGP_AJ_T0025111.1 MGP_AJ_G0017179.1 mouse_genomes_project 10 41828685 41831028 + MGP_AJ_P0025111 protein_coding protein_coding MGP_AJ_T0026746.1 MGP_AJ_G0017612.1 mouse_genomes_project 10 86965824 87010751 + MGP_AJ_P0026746 Slc5a8 protein_coding protein_coding MGP_AJ_T0026327.1 MGP_AJ_G0017505.1 mouse_genomes_project 10 78692777 78694297 - MGP_AJ_P0026327 Timm13 protein_coding protein_coding MGP_AJ_T0027248.1 MGP_AJ_G0017766.1 mouse_genomes_project 10 121282341 121365924 - MGP_AJ_P0027248 Mon2 protein_coding protein_coding MGP_AJ_T0027249.1 MGP_AJ_G0017766.1 mouse_genomes_project 10 121282341 121365924 - MGP_AJ_P0027249 Mon2 protein_coding protein_coding MGP_AJ_T0027250.1 MGP_AJ_G0017766.1 mouse_genomes_project 10 121282341 121365924 - MGP_AJ_P0027250 Mon2 protein_coding protein_coding MGP_AJ_T0024511.1 MGP_AJ_G0016984.1 mouse_genomes_project 10 6635335 6684993 - MGP_AJ_P0024511 Samd5 protein_coding protein_coding MGP_AJ_T0026311.1 MGP_AJ_G0017496.1 mouse_genomes_project 10 78587683 78590209 - MGP_AJ_P0026311 Plekhj1 protein_coding protein_coding MGP_AJ_T0024852.1 MGP_AJ_G0017089.1 mouse_genomes_project 10 26653957 26689320 + MGP_AJ_P0024852 Echdc1 protein_coding protein_coding MGP_AJ_T0024853.1 MGP_AJ_G0017089.1 mouse_genomes_project 10 26654072 26688104 + MGP_AJ_P0024853 Echdc1 protein_coding protein_coding MGP_AJ_T0024854.1 MGP_AJ_G0017089.1 mouse_genomes_project 10 26654291 26690421 + MGP_AJ_P0024854 Echdc1 protein_coding protein_coding MGP_AJ_T0024855.1 MGP_AJ_G0017089.1 mouse_genomes_project 10 26654454 26678189 + Echdc1 protein_coding processed_transcript MGP_AJ_T0025771.1 MGP_AJ_G0017346.1 mouse_genomes_project 10 73477379 73479923 + MGP_AJ_P0025771 Derl3 protein_coding protein_coding MGP_AJ_T0098890.1 MGP_AJ_G0036873.1 mouse_genomes_project 10 71079844 71108907 + Gm15397 sense_intronic sense_intronic MGP_AJ_T0098788.1 MGP_AJ_G0036772.1 mouse_genomes_project 10 26285187 26285341 - Gm22811 ribozyme ribozyme MGP_AJ_T0025017.1 MGP_AJ_G0017152.1 mouse_genomes_project 10 39014785 39038967 + MGP_AJ_P0025017 Ppil6 protein_coding protein_coding MGP_AJ_T0012396.1 MGP_AJ_G0010491.1 mouse_genomes_project 10 21340549 21341164 + processed_pseudogene processed_pseudogene MGP_AJ_T0025625.1 MGP_AJ_G0017317.1 mouse_genomes_project 10 68407448 68469853 + MGP_AJ_P0025625 4930533K18Rik protein_coding protein_coding MGP_AJ_T0027212.1 MGP_AJ_G0017754.1 mouse_genomes_project 10 119325689 119393077 + MGP_AJ_P0027212 Wif1 protein_coding protein_coding MGP_AJ_T0027213.1 MGP_AJ_G0017754.1 mouse_genomes_project 10 119325753 119393073 + MGP_AJ_P0027213 Wif1 protein_coding protein_coding MGP_AJ_T0027214.1 MGP_AJ_G0017754.1 mouse_genomes_project 10 119376254 119393064 + Wif1 protein_coding retained_intron MGP_AJ_T0025177.1 MGP_AJ_G0017207.1 mouse_genomes_project 10 51227451 51239704 + MGP_AJ_P0025177 Asf1a protein_coding protein_coding MGP_AJ_T0026609.1 MGP_AJ_G0017573.1 mouse_genomes_project 10 82596842 82702359 + MGP_AJ_P0026609 Polr3b protein_coding protein_coding MGP_AJ_T0027529.1 MGP_AJ_G0017865.1 mouse_genomes_project 10 127374765 127380408 - MGP_AJ_P0027529 Bloc1s1 protein_coding protein_coding MGP_AJ_T0027532.1 MGP_AJ_G0017865.1 mouse_genomes_project 10 127376797 127380408 - MGP_AJ_P0027532 Bloc1s1 protein_coding protein_coding MGP_AJ_T0027533.1 MGP_AJ_G0017865.1 mouse_genomes_project 10 127376830 127380919 - MGP_AJ_P0027533 Bloc1s1 protein_coding protein_coding MGP_AJ_T0027534.1 MGP_AJ_G0017865.1 mouse_genomes_project 10 127376926 127379910 - Bloc1s1 protein_coding processed_transcript MGP_AJ_T0027535.1 MGP_AJ_G0017865.1 mouse_genomes_project 10 127379399 127380408 - Bloc1s1 protein_coding retained_intron MGP_AJ_T0099249.1 MGP_AJ_G0037215.1 mouse_genomes_project 10 20460614 20460721 - Gm24655 snRNA snRNA MGP_AJ_T0003054.1 MGP_AJ_G0002851.1 mouse_genomes_project 10 78140028 78140563 + Gm15123 antisense antisense MGP_AJ_T0026111.1 MGP_AJ_G0017452.1 mouse_genomes_project 10 77726908 77733377 + MGP_AJ_P0026111 Grin3b protein_coding protein_coding MGP_AJ_T0026112.1 MGP_AJ_G0017452.1 mouse_genomes_project 10 77729923 77732902 + MGP_AJ_P0026112 Grin3b protein_coding protein_coding MGP_AJ_T0026113.1 MGP_AJ_G0017452.1 mouse_genomes_project 10 77730595 77733311 + MGP_AJ_P0026113 Grin3b protein_coding protein_coding MGP_AJ_T0027017.1 MGP_AJ_G0017688.1 mouse_genomes_project 10 105850372 105993527 - MGP_AJ_P0027017 Otogl protein_coding protein_coding MGP_AJ_T0026376.1 MGP_AJ_G0017517.1 mouse_genomes_project 10 78974567 78980444 + MGP_AJ_P0026376 Eef2 protein_coding protein_coding MGP_AJ_T0012389.1 MGP_AJ_G0010484.1 mouse_genomes_project 10 10895115 10896123 - processed_pseudogene processed_pseudogene MGP_AJ_T0099248.1 MGP_AJ_G0037214.1 mouse_genomes_project 10 14140123 14140220 + Gm25382 snRNA snRNA MGP_AJ_T0025544.1 MGP_AJ_G0017310.1 mouse_genomes_project 10 66736668 66739998 - MGP_AJ_P0025544 A930033H14Rik protein_coding protein_coding MGP_AJ_T0099301.1 MGP_AJ_G0037267.1 mouse_genomes_project 10 121727916 121728100 + Gm22958 snRNA snRNA MGP_AJ_T0026028.1 MGP_AJ_G0017431.1 mouse_genomes_project 10 77439773 77445838 + MGP_AJ_P0026028 Gzmm protein_coding protein_coding MGP_AJ_T0026029.1 MGP_AJ_G0017431.1 mouse_genomes_project 10 77444334 77445837 + Gzmm protein_coding processed_transcript MGP_AJ_T0026652.1 MGP_AJ_G0017588.1 mouse_genomes_project 10 84105222 84546817 - MGP_AJ_P0026652 Syn3 protein_coding protein_coding MGP_AJ_T0026653.1 MGP_AJ_G0017588.1 mouse_genomes_project 10 84107520 84117348 - Syn3 protein_coding processed_transcript MGP_AJ_T0026654.1 MGP_AJ_G0017588.1 mouse_genomes_project 10 84120978 84539883 - Syn3 protein_coding retained_intron MGP_AJ_T0026655.1 MGP_AJ_G0017588.1 mouse_genomes_project 10 84337861 84546843 - MGP_AJ_P0026655 Syn3 protein_coding protein_coding MGP_AJ_T0026660.1 MGP_AJ_G0017588.1 mouse_genomes_project 10 84394222 84539883 - Syn3 protein_coding retained_intron MGP_AJ_T0026661.1 MGP_AJ_G0017588.1 mouse_genomes_project 10 84397595 84546857 - Syn3 protein_coding retained_intron MGP_AJ_T0025905.1 MGP_AJ_G0017385.1 mouse_genomes_project 10 75489990 75491803 - MGP_AJ_P0025905 protein_coding protein_coding MGP_AJ_T0003076.1 MGP_AJ_G0002868.1 mouse_genomes_project 10 85896565 85898551 - Igf1os antisense antisense MGP_AJ_T0003077.1 MGP_AJ_G0002868.1 mouse_genomes_project 10 85896577 85933437 - Igf1os antisense antisense MGP_AJ_T0024676.1 MGP_AJ_G0017026.1 mouse_genomes_project 10 16788536 16829531 + MGP_AJ_P0024676 Il20ra protein_coding protein_coding MGP_AJ_T0026061.1 MGP_AJ_G0017441.1 mouse_genomes_project 10 77608935 77618774 + MGP_AJ_P0026061 Ptbp1 protein_coding protein_coding MGP_AJ_T0026062.1 MGP_AJ_G0017441.1 mouse_genomes_project 10 77609113 77614220 + Ptbp1 protein_coding retained_intron MGP_AJ_T0026063.1 MGP_AJ_G0017441.1 mouse_genomes_project 10 77609137 77619157 + MGP_AJ_P0026063 Ptbp1 protein_coding protein_coding MGP_AJ_T0026064.1 MGP_AJ_G0017441.1 mouse_genomes_project 10 77609141 77618001 + Ptbp1 protein_coding retained_intron MGP_AJ_T0026065.1 MGP_AJ_G0017441.1 mouse_genomes_project 10 77609149 77614121 + Ptbp1 protein_coding processed_transcript MGP_AJ_T0026066.1 MGP_AJ_G0017441.1 mouse_genomes_project 10 77609160 77617932 + MGP_AJ_P0026066 Ptbp1 protein_coding nonsense_mediated_decay MGP_AJ_T0026067.1 MGP_AJ_G0017441.1 mouse_genomes_project 10 77609173 77613522 + MGP_AJ_P0026067 Ptbp1 protein_coding protein_coding MGP_AJ_T0026068.1 MGP_AJ_G0017441.1 mouse_genomes_project 10 77609175 77613552 + Ptbp1 protein_coding processed_transcript MGP_AJ_T0026069.1 MGP_AJ_G0017441.1 mouse_genomes_project 10 77609175 77613872 + MGP_AJ_P0026069 Ptbp1 protein_coding nonsense_mediated_decay MGP_AJ_T0026070.1 MGP_AJ_G0017441.1 mouse_genomes_project 10 77609176 77618774 + MGP_AJ_P0026070 Ptbp1 protein_coding protein_coding MGP_AJ_T0026071.1 MGP_AJ_G0017441.1 mouse_genomes_project 10 77609546 77613604 + MGP_AJ_P0026071 Ptbp1 protein_coding protein_coding MGP_AJ_T0026072.1 MGP_AJ_G0017441.1 mouse_genomes_project 10 77613279 77613895 + MGP_AJ_P0026072 Ptbp1 protein_coding protein_coding MGP_AJ_T0026073.1 MGP_AJ_G0017441.1 mouse_genomes_project 10 77613501 77614633 + Ptbp1 protein_coding retained_intron MGP_AJ_T0026074.1 MGP_AJ_G0017441.1 mouse_genomes_project 10 77614157 77617561 + MGP_AJ_P0026074 Ptbp1 protein_coding nonsense_mediated_decay MGP_AJ_T0026076.1 MGP_AJ_G0017441.1 mouse_genomes_project 10 77616245 77617558 + Ptbp1 protein_coding retained_intron MGP_AJ_T0026418.1 MGP_AJ_G0017531.1 mouse_genomes_project 10 79149860 79154293 - MGP_AJ_P0026418 Hmg20b protein_coding protein_coding MGP_AJ_T0026419.1 MGP_AJ_G0017531.1 mouse_genomes_project 10 79149863 79154182 - Hmg20b protein_coding retained_intron MGP_AJ_T0026420.1 MGP_AJ_G0017531.1 mouse_genomes_project 10 79149863 79154239 - MGP_AJ_P0026420 Hmg20b protein_coding protein_coding MGP_AJ_T0026421.1 MGP_AJ_G0017531.1 mouse_genomes_project 10 79149863 79154237 - MGP_AJ_P0026421 Hmg20b protein_coding protein_coding MGP_AJ_T0026422.1 MGP_AJ_G0017531.1 mouse_genomes_project 10 79149863 79154004 - MGP_AJ_P0026422 Hmg20b protein_coding protein_coding MGP_AJ_T0026423.1 MGP_AJ_G0017531.1 mouse_genomes_project 10 79149864 79150543 - Hmg20b protein_coding retained_intron MGP_AJ_T0026424.1 MGP_AJ_G0017531.1 mouse_genomes_project 10 79149864 79154140 - MGP_AJ_P0026424 Hmg20b protein_coding protein_coding MGP_AJ_T0026425.1 MGP_AJ_G0017531.1 mouse_genomes_project 10 79150571 79152898 - MGP_AJ_P0026425 Hmg20b protein_coding protein_coding MGP_AJ_T0026426.1 MGP_AJ_G0017531.1 mouse_genomes_project 10 79150809 79154256 - MGP_AJ_P0026426 Hmg20b protein_coding protein_coding MGP_AJ_T0026427.1 MGP_AJ_G0017531.1 mouse_genomes_project 10 79150810 79151735 - Hmg20b protein_coding retained_intron MGP_AJ_T0026428.1 MGP_AJ_G0017531.1 mouse_genomes_project 10 79152816 79154132 - Hmg20b protein_coding processed_transcript MGP_AJ_T0026429.1 MGP_AJ_G0017531.1 mouse_genomes_project 10 79152858 79154130 - Hmg20b protein_coding retained_intron MGP_AJ_T0026430.1 MGP_AJ_G0017531.1 mouse_genomes_project 10 79152868 79154257 - Hmg20b protein_coding processed_transcript MGP_AJ_T0012410.1 MGP_AJ_G0010505.1 mouse_genomes_project 10 39986678 39986855 + processed_pseudogene processed_pseudogene MGP_AJ_T0009647.1 MGP_AJ_G0007769.1 mouse_genomes_project 10 126999525 126999644 - miRNA miRNA MGP_AJ_T0012446.1 MGP_AJ_G0010541.1 mouse_genomes_project 10 115798057 115799715 + processed_pseudogene processed_pseudogene MGP_AJ_T0027456.1 MGP_AJ_G0017835.1 mouse_genomes_project 10 126762798 126788641 + MGP_AJ_P0027456 Cs protein_coding protein_coding MGP_AJ_T0025191.1 MGP_AJ_G0017210.1 mouse_genomes_project 10 53695011 53906028 - MGP_AJ_P0025191 Tbc1d32 protein_coding protein_coding MGP_AJ_T0027170.1 MGP_AJ_G0017745.1 mouse_genomes_project 10 117709817 118348035 + MGP_AJ_P0027170 Grip1 protein_coding protein_coding MGP_AJ_T0027171.1 MGP_AJ_G0017745.1 mouse_genomes_project 10 117710108 118335657 + MGP_AJ_P0027171 Grip1 protein_coding protein_coding MGP_AJ_T0027172.1 MGP_AJ_G0017745.1 mouse_genomes_project 10 117710114 118337200 + MGP_AJ_P0027172 Grip1 protein_coding protein_coding MGP_AJ_T0027173.1 MGP_AJ_G0017745.1 mouse_genomes_project 10 118076043 118337200 + MGP_AJ_P0027173 Grip1 protein_coding protein_coding MGP_AJ_T0027174.1 MGP_AJ_G0017745.1 mouse_genomes_project 10 118076052 118336576 + MGP_AJ_P0027174 Grip1 protein_coding protein_coding MGP_AJ_T0027175.1 MGP_AJ_G0017745.1 mouse_genomes_project 10 118076159 118270278 + Grip1 protein_coding retained_intron MGP_AJ_T0027176.1 MGP_AJ_G0017745.1 mouse_genomes_project 10 118076166 118335657 + MGP_AJ_P0027176 Grip1 protein_coding protein_coding MGP_AJ_T0027177.1 MGP_AJ_G0017745.1 mouse_genomes_project 10 118076166 118335657 + MGP_AJ_P0027177 Grip1 protein_coding protein_coding MGP_AJ_T0027178.1 MGP_AJ_G0017745.1 mouse_genomes_project 10 118076169 118335577 + MGP_AJ_P0027178 Grip1 protein_coding protein_coding MGP_AJ_T0027179.1 MGP_AJ_G0017745.1 mouse_genomes_project 10 118076179 118347835 + MGP_AJ_P0027179 Grip1 protein_coding protein_coding MGP_AJ_T0027180.1 MGP_AJ_G0017745.1 mouse_genomes_project 10 118108985 118337195 + Grip1 protein_coding retained_intron MGP_AJ_T0027181.1 MGP_AJ_G0017745.1 mouse_genomes_project 10 118167948 118335577 + Grip1 protein_coding processed_transcript MGP_AJ_T0027182.1 MGP_AJ_G0017745.1 mouse_genomes_project 10 118252251 118348036 + MGP_AJ_P0027182 Grip1 protein_coding protein_coding MGP_AJ_T0027183.1 MGP_AJ_G0017745.1 mouse_genomes_project 10 118252453 118337071 + MGP_AJ_P0027183 Grip1 protein_coding protein_coding MGP_AJ_T0027184.1 MGP_AJ_G0017745.1 mouse_genomes_project 10 118252601 118335853 + MGP_AJ_P0027184 Grip1 protein_coding protein_coding MGP_AJ_T0027185.1 MGP_AJ_G0017745.1 mouse_genomes_project 10 118252637 118348035 + MGP_AJ_P0027185 Grip1 protein_coding nonsense_mediated_decay MGP_AJ_T0024768.1 MGP_AJ_G0017059.1 mouse_genomes_project 10 21276884 21277922 - MGP_AJ_P0024768 Taar6 protein_coding protein_coding MGP_AJ_T0000335.1 MGP_AJ_G0000279.1 mouse_genomes_project 10 82999619 82999687 + mt-Tp Mt_tRNA Mt_tRNA MGP_AJ_T0026130.1 MGP_AJ_G0017457.1 mouse_genomes_project 10 77793481 77794718 - Polr2e protein_coding retained_intron MGP_AJ_T0026131.1 MGP_AJ_G0017457.1 mouse_genomes_project 10 77793481 77797243 - Polr2e protein_coding retained_intron MGP_AJ_T0026132.1 MGP_AJ_G0017457.1 mouse_genomes_project 10 77793481 77797328 - MGP_AJ_P0026132 Polr2e protein_coding protein_coding MGP_AJ_T0026133.1 MGP_AJ_G0017457.1 mouse_genomes_project 10 77793483 77797183 - Polr2e protein_coding retained_intron MGP_AJ_T0026134.1 MGP_AJ_G0017457.1 mouse_genomes_project 10 77793707 77797234 - Polr2e protein_coding retained_intron MGP_AJ_T0099277.1 MGP_AJ_G0037243.1 mouse_genomes_project 10 77741654 77741761 + Gm26243 snRNA snRNA MGP_AJ_T0025613.1 MGP_AJ_G0017315.1 mouse_genomes_project 10 67985965 68104991 + MGP_AJ_P0025613 Fam13c protein_coding protein_coding MGP_AJ_T0025614.1 MGP_AJ_G0017315.1 mouse_genomes_project 10 67986177 68104991 + MGP_AJ_P0025614 Fam13c protein_coding protein_coding MGP_AJ_T0025615.1 MGP_AJ_G0017315.1 mouse_genomes_project 10 67986223 68104993 + MGP_AJ_P0025615 Fam13c protein_coding protein_coding MGP_AJ_T0009584.1 MGP_AJ_G0007706.1 mouse_genomes_project 10 56414009 56414213 + Gm27672 miRNA miRNA MGP_AJ_T0025790.1 MGP_AJ_G0017354.1 mouse_genomes_project 10 73735983 73777643 + MGP_AJ_P0025790 Slc5a4a protein_coding protein_coding MGP_AJ_T0025143.1 MGP_AJ_G0017191.1 mouse_genomes_project 10 49108940 49129270 + MGP_AJ_P0025143 Lilr4b protein_coding protein_coding MGP_AJ_T0025146.1 MGP_AJ_G0017191.1 mouse_genomes_project 10 49117019 49139343 + Lilr4b protein_coding processed_transcript MGP_AJ_T0024508.1 MGP_AJ_G0016981.1 mouse_genomes_project 10 5192982 5501468 - MGP_AJ_P0024508 Ust protein_coding protein_coding MGP_AJ_T0011282.1 MGP_AJ_G0009404.1 mouse_genomes_project 10 90238272 90238380 - Gm27366 misc_RNA misc_RNA MGP_AJ_T0026364.1 MGP_AJ_G0017515.1 mouse_genomes_project 10 78931870 78941224 + MGP_AJ_P0026364 Zbtb7a protein_coding protein_coding MGP_AJ_T0026365.1 MGP_AJ_G0017515.1 mouse_genomes_project 10 78932921 78948920 + MGP_AJ_P0026365 Zbtb7a protein_coding protein_coding MGP_AJ_T0026366.1 MGP_AJ_G0017515.1 mouse_genomes_project 10 78933199 78945171 + MGP_AJ_P0026366 Zbtb7a protein_coding protein_coding MGP_AJ_T0026367.1 MGP_AJ_G0017515.1 mouse_genomes_project 10 78933216 78940835 + MGP_AJ_P0026367 Zbtb7a protein_coding protein_coding MGP_AJ_T0026368.1 MGP_AJ_G0017515.1 mouse_genomes_project 10 78933228 78949693 + MGP_AJ_P0026368 Zbtb7a protein_coding protein_coding MGP_AJ_T0026369.1 MGP_AJ_G0017515.1 mouse_genomes_project 10 78934596 78945186 + MGP_AJ_P0026369 Zbtb7a protein_coding protein_coding MGP_AJ_T0100527.1 MGP_AJ_G0038493.1 mouse_genomes_project 10 57277690 57277822 - Gm23803 snoRNA snoRNA MGP_AJ_T0012430.1 MGP_AJ_G0010525.1 mouse_genomes_project 10 73197526 73197950 - processed_pseudogene processed_pseudogene MGP_AJ_T0026897.1 MGP_AJ_G0017640.1 mouse_genomes_project 10 92261128 92310514 + MGP_AJ_P0026897 Nr2c1 protein_coding protein_coding MGP_AJ_T0026898.1 MGP_AJ_G0017640.1 mouse_genomes_project 10 92261524 92308986 + MGP_AJ_P0026898 Nr2c1 protein_coding protein_coding MGP_AJ_T0026899.1 MGP_AJ_G0017640.1 mouse_genomes_project 10 92269427 92308656 + MGP_AJ_P0026899 Nr2c1 protein_coding protein_coding MGP_AJ_T0099284.1 MGP_AJ_G0037250.1 mouse_genomes_project 10 86226745 86226860 - Gm26357 snRNA snRNA MGP_AJ_T0024630.1 MGP_AJ_G0017009.1 mouse_genomes_project 10 14756405 14758851 + MGP_AJ_P0024630 Cited2 protein_coding protein_coding MGP_AJ_T0026153.1 MGP_AJ_G0017461.1 mouse_genomes_project 10 77892144 77899081 - MGP_AJ_P0026153 Cbarp protein_coding protein_coding MGP_AJ_T0026154.1 MGP_AJ_G0017461.1 mouse_genomes_project 10 77892144 77899081 - MGP_AJ_P0026154 Cbarp protein_coding protein_coding MGP_AJ_T0026155.1 MGP_AJ_G0017461.1 mouse_genomes_project 10 77892244 77901018 - MGP_AJ_P0026155 Cbarp protein_coding nonsense_mediated_decay MGP_AJ_T0026156.1 MGP_AJ_G0017461.1 mouse_genomes_project 10 77892244 77901018 - MGP_AJ_P0026156 Cbarp protein_coding protein_coding MGP_AJ_T0026157.1 MGP_AJ_G0017461.1 mouse_genomes_project 10 77894229 77896375 - Cbarp protein_coding retained_intron MGP_AJ_T0026158.1 MGP_AJ_G0017461.1 mouse_genomes_project 10 77894767 77897282 - Cbarp protein_coding retained_intron MGP_AJ_T0026159.1 MGP_AJ_G0017461.1 mouse_genomes_project 10 77896811 77901016 - MGP_AJ_P0026159 Cbarp protein_coding nonsense_mediated_decay MGP_AJ_T0026160.1 MGP_AJ_G0017461.1 mouse_genomes_project 10 77896851 77900831 - MGP_AJ_P0026160 Cbarp protein_coding nonsense_mediated_decay MGP_AJ_T0026161.1 MGP_AJ_G0017461.1 mouse_genomes_project 10 77897209 77899619 - Cbarp protein_coding processed_transcript MGP_AJ_T0026162.1 MGP_AJ_G0017461.1 mouse_genomes_project 10 77898338 77899606 - Cbarp protein_coding processed_transcript MGP_AJ_T0026163.1 MGP_AJ_G0017461.1 mouse_genomes_project 10 77898356 77899046 - Cbarp protein_coding processed_transcript MGP_AJ_T0026164.1 MGP_AJ_G0017461.1 mouse_genomes_project 10 77898401 77899342 - Cbarp protein_coding retained_intron MGP_AJ_T0026165.1 MGP_AJ_G0017461.1 mouse_genomes_project 10 77898567 77899288 - Cbarp protein_coding retained_intron MGP_AJ_T0026166.1 MGP_AJ_G0017461.1 mouse_genomes_project 10 77899040 77900269 - Cbarp protein_coding processed_transcript MGP_AJ_T0026167.1 MGP_AJ_G0017461.1 mouse_genomes_project 10 77899040 77902488 - MGP_AJ_P0026167 Cbarp protein_coding protein_coding MGP_AJ_T0003073.1 MGP_AJ_G0002865.1 mouse_genomes_project 10 84914268 84950506 + Gm16268 antisense antisense MGP_AJ_T0026989.1 MGP_AJ_G0017677.1 mouse_genomes_project 10 101223781 101409366 - MGP_AJ_P0026989 Lrriq1 protein_coding unknown_likely_coding MGP_AJ_T0026990.1 MGP_AJ_G0017677.1 mouse_genomes_project 10 101240828 101409495 - MGP_AJ_P0026990 Lrriq1 protein_coding protein_coding MGP_AJ_T0026991.1 MGP_AJ_G0017677.1 mouse_genomes_project 10 101387524 101409495 - MGP_AJ_P0026991 Lrriq1 protein_coding protein_coding MGP_AJ_T0026992.1 MGP_AJ_G0017677.1 mouse_genomes_project 10 101388454 101409466 - MGP_AJ_P0026992 Lrriq1 protein_coding protein_coding MGP_AJ_T0025959.1 MGP_AJ_G0017398.1 mouse_genomes_project 10 75970796 76055249 - MGP_AJ_P0025959 Agpat3 protein_coding protein_coding MGP_AJ_T0025960.1 MGP_AJ_G0017398.1 mouse_genomes_project 10 75973181 76054672 - MGP_AJ_P0025960 Agpat3 protein_coding protein_coding MGP_AJ_T0025961.1 MGP_AJ_G0017398.1 mouse_genomes_project 10 75973181 75999818 - MGP_AJ_P0025961 Agpat3 protein_coding protein_coding MGP_AJ_T0025962.1 MGP_AJ_G0017398.1 mouse_genomes_project 10 75973181 76054860 - MGP_AJ_P0025962 Agpat3 protein_coding protein_coding MGP_AJ_T0025963.1 MGP_AJ_G0017398.1 mouse_genomes_project 10 75973181 76054507 - MGP_AJ_P0025963 Agpat3 protein_coding protein_coding MGP_AJ_T0025964.1 MGP_AJ_G0017398.1 mouse_genomes_project 10 75975229 75997014 - MGP_AJ_P0025964 Agpat3 protein_coding protein_coding MGP_AJ_T0025965.1 MGP_AJ_G0017398.1 mouse_genomes_project 10 75975232 75980056 - Agpat3 protein_coding retained_intron MGP_AJ_T0025966.1 MGP_AJ_G0017398.1 mouse_genomes_project 10 75985886 76023000 - MGP_AJ_P0025966 Agpat3 protein_coding protein_coding MGP_AJ_T0025967.1 MGP_AJ_G0017398.1 mouse_genomes_project 10 75985932 76009170 - MGP_AJ_P0025967 Agpat3 protein_coding protein_coding MGP_AJ_T0025968.1 MGP_AJ_G0017398.1 mouse_genomes_project 10 75989474 76055296 - MGP_AJ_P0025968 Agpat3 protein_coding protein_coding MGP_AJ_T0025969.1 MGP_AJ_G0017398.1 mouse_genomes_project 10 75989485 76055019 - MGP_AJ_P0025969 Agpat3 protein_coding protein_coding MGP_AJ_T0025415.1 MGP_AJ_G0017274.1 mouse_genomes_project 10 59919526 59958123 - MGP_AJ_P0025415 Hkdc1 protein_coding protein_coding MGP_AJ_T0025416.1 MGP_AJ_G0017274.1 mouse_genomes_project 10 59930881 59936084 - Hkdc1 protein_coding retained_intron MGP_AJ_T0025417.1 MGP_AJ_G0017274.1 mouse_genomes_project 10 59945468 59947484 - Hkdc1 protein_coding retained_intron MGP_AJ_T0025418.1 MGP_AJ_G0017274.1 mouse_genomes_project 10 59952014 59958040 - Hkdc1 protein_coding retained_intron MGP_AJ_T0003068.1 MGP_AJ_G0002861.1 mouse_genomes_project 10 81079173 81082062 - 1700025N21Rik antisense antisense MGP_AJ_T0024762.1 MGP_AJ_G0017053.1 mouse_genomes_project 10 21185364 21195943 + MGP_AJ_P0024762 Vnn1 protein_coding protein_coding MGP_AJ_T0027563.1 MGP_AJ_G0017887.1 mouse_genomes_project 10 128034497 128035436 + MGP_AJ_P0027563 Olfr791 protein_coding protein_coding MGP_AJ_T0026460.1 MGP_AJ_G0017538.1 mouse_genomes_project 10 79264645 79288066 - MGP_AJ_P0026460 Celf5 protein_coding protein_coding MGP_AJ_T0026461.1 MGP_AJ_G0017538.1 mouse_genomes_project 10 79272430 79276223 - Celf5 protein_coding retained_intron MGP_AJ_T0026462.1 MGP_AJ_G0017538.1 mouse_genomes_project 10 79272922 79278794 - Celf5 protein_coding retained_intron MGP_AJ_T0026463.1 MGP_AJ_G0017538.1 mouse_genomes_project 10 79273174 79288133 - Celf5 protein_coding retained_intron MGP_AJ_T0026464.1 MGP_AJ_G0017538.1 mouse_genomes_project 10 79274860 79278418 - MGP_AJ_P0026464 Celf5 protein_coding protein_coding MGP_AJ_T0026985.1 MGP_AJ_G0017675.1 mouse_genomes_project 10 100670488 100705694 + MGP_AJ_P0026985 Rassf9 protein_coding protein_coding MGP_AJ_T0024893.1 MGP_AJ_G0017109.1 mouse_genomes_project 10 31480875 31503903 - MGP_AJ_P0024893 Rwdd1 protein_coding protein_coding MGP_AJ_T0024894.1 MGP_AJ_G0017109.1 mouse_genomes_project 10 31480881 31485568 - Rwdd1 protein_coding retained_intron MGP_AJ_T0012422.1 MGP_AJ_G0010517.1 mouse_genomes_project 10 58825199 58825668 + processed_pseudogene processed_pseudogene MGP_AJ_T0027270.1 MGP_AJ_G0017775.1 mouse_genomes_project 10 125375029 125385491 - MGP_AJ_P0027270 Mettl21b protein_coding protein_coding MGP_AJ_T0026929.1 MGP_AJ_G0017653.1 mouse_genomes_project 10 94791439 94797255 + MGP_AJ_P0026929 Btg1 protein_coding protein_coding MGP_AJ_T0011269.1 MGP_AJ_G0009391.1 mouse_genomes_project 10 39853549 39853794 + Gm23533 misc_RNA misc_RNA MGP_AJ_T0012404.1 MGP_AJ_G0010499.1 mouse_genomes_project 10 31097460 31097751 + processed_pseudogene processed_pseudogene MGP_AJ_T0024410.1 MGP_AJ_G0016962.1 mouse_genomes_project 10 2516050 2530955 + MGP_AJ_P0024410 Myct1 protein_coding protein_coding MGP_AJ_T0026053.1 MGP_AJ_G0017438.1 mouse_genomes_project 10 77534852 77542227 - MGP_AJ_P0026053 Prss57 protein_coding protein_coding MGP_AJ_T0026054.1 MGP_AJ_G0017438.1 mouse_genomes_project 10 77534854 77544203 - MGP_AJ_P0026054 Prss57 protein_coding protein_coding MGP_AJ_T0026055.1 MGP_AJ_G0017438.1 mouse_genomes_project 10 77536296 77537846 - MGP_AJ_P0026055 Prss57 protein_coding protein_coding MGP_AJ_T0026056.1 MGP_AJ_G0017438.1 mouse_genomes_project 10 77536474 77537864 - MGP_AJ_P0026056 Prss57 protein_coding protein_coding MGP_AJ_T0025901.1 MGP_AJ_G0017381.1 mouse_genomes_project 10 75340321 75340684 + MGP_AJ_P0025901 Gm10142 protein_coding protein_coding MGP_AJ_T0098375.1 MGP_AJ_G0036359.1 mouse_genomes_project 10 41606132 41606680 + pseudogene pseudogene MGP_AJ_T0027380.1 MGP_AJ_G0017807.1 mouse_genomes_project 10 126097645 126104919 + MGP_AJ_P0027380 Tac2 protein_coding protein_coding MGP_AJ_T0027381.1 MGP_AJ_G0017807.1 mouse_genomes_project 10 126098583 126104919 + MGP_AJ_P0027381 Tac2 protein_coding protein_coding MGP_AJ_T0098377.1 MGP_AJ_G0036361.1 mouse_genomes_project 10 56669268 56673747 + pseudogene pseudogene MGP_AJ_T0003046.1 MGP_AJ_G0002844.1 mouse_genomes_project 10 73577729 73579031 - Gm16220 antisense antisense MGP_AJ_T0024737.1 MGP_AJ_G0017043.1 mouse_genomes_project 10 19254157 19260297 - MGP_AJ_P0024737 protein_coding protein_coding MGP_AJ_T0024738.1 MGP_AJ_G0017043.1 mouse_genomes_project 10 19254165 19259841 - protein_coding processed_transcript MGP_AJ_T0024739.1 MGP_AJ_G0017043.1 mouse_genomes_project 10 19259465 19259699 - protein_coding transcribed_unprocessed_pseudogene MGP_AJ_T0012436.1 MGP_AJ_G0010531.1 mouse_genomes_project 10 84130676 84130793 - processed_pseudogene processed_pseudogene MGP_AJ_T0011283.1 MGP_AJ_G0009405.1 mouse_genomes_project 10 90239006 90239115 - Gm27419 misc_RNA misc_RNA MGP_AJ_T0025006.1 MGP_AJ_G0017151.1 mouse_genomes_project 10 39009988 39014677 - Smpd2 protein_coding retained_intron MGP_AJ_T0025009.1 MGP_AJ_G0017151.1 mouse_genomes_project 10 39011518 39014468 - Smpd2 protein_coding retained_intron MGP_AJ_T0025010.1 MGP_AJ_G0017151.1 mouse_genomes_project 10 39011518 39014687 - MGP_AJ_P0025010 Smpd2 protein_coding protein_coding MGP_AJ_T0025011.1 MGP_AJ_G0017151.1 mouse_genomes_project 10 39011524 39014677 - Smpd2 protein_coding retained_intron MGP_AJ_T0025012.1 MGP_AJ_G0017151.1 mouse_genomes_project 10 39011895 39012592 - Smpd2 protein_coding retained_intron MGP_AJ_T0025013.1 MGP_AJ_G0017151.1 mouse_genomes_project 10 39011985 39014444 - MGP_AJ_P0025013 Smpd2 protein_coding nonsense_mediated_decay MGP_AJ_T0025014.1 MGP_AJ_G0017151.1 mouse_genomes_project 10 39012377 39014026 - Smpd2 protein_coding retained_intron MGP_AJ_T0025015.1 MGP_AJ_G0017151.1 mouse_genomes_project 10 39012705 39014685 - Smpd2 protein_coding retained_intron MGP_AJ_T0025016.1 MGP_AJ_G0017151.1 mouse_genomes_project 10 39013363 39014716 - Smpd2 protein_coding retained_intron MGP_AJ_T0027313.1 MGP_AJ_G0017791.1 mouse_genomes_project 10 125636132 125641647 + MGP_AJ_P0027313 Ddit3 protein_coding protein_coding MGP_AJ_T0027314.1 MGP_AJ_G0017791.1 mouse_genomes_project 10 125636151 125641424 + MGP_AJ_P0027314 Ddit3 protein_coding protein_coding MGP_AJ_T0027315.1 MGP_AJ_G0017791.1 mouse_genomes_project 10 125636152 125639941 + Ddit3 protein_coding retained_intron MGP_AJ_T0024582.1 MGP_AJ_G0016999.1 mouse_genomes_project 10 10208329 10326168 - MGP_AJ_P0024582 Phactr2 protein_coding protein_coding MGP_AJ_T0024583.1 MGP_AJ_G0016999.1 mouse_genomes_project 10 10213949 10390644 - MGP_AJ_P0024583 Phactr2 protein_coding protein_coding MGP_AJ_T0024584.1 MGP_AJ_G0016999.1 mouse_genomes_project 10 10213949 10474102 - MGP_AJ_P0024584 Phactr2 protein_coding protein_coding MGP_AJ_T0024585.1 MGP_AJ_G0016999.1 mouse_genomes_project 10 10213951 10326297 - MGP_AJ_P0024585 Phactr2 protein_coding protein_coding MGP_AJ_T0024586.1 MGP_AJ_G0016999.1 mouse_genomes_project 10 10214812 10390861 - MGP_AJ_P0024586 Phactr2 protein_coding protein_coding MGP_AJ_T0024587.1 MGP_AJ_G0016999.1 mouse_genomes_project 10 10383309 10390622 - Phactr2 protein_coding processed_transcript MGP_AJ_T0000825.1 MGP_AJ_G0000760.1 mouse_genomes_project 10 98945093 98945857 - TEC TEC MGP_AJ_T0027076.1 MGP_AJ_G0017712.1 mouse_genomes_project 10 113512696 113534563 - MGP_AJ_P0027076 Tmem19 protein_coding protein_coding MGP_AJ_T0027021.1 MGP_AJ_G0017691.1 mouse_genomes_project 10 106587374 107110348 - MGP_AJ_P0027021 Syt1 protein_coding protein_coding MGP_AJ_T0027022.1 MGP_AJ_G0017691.1 mouse_genomes_project 10 106587378 107110355 - MGP_AJ_P0027022 Syt1 protein_coding protein_coding MGP_AJ_T0027023.1 MGP_AJ_G0017691.1 mouse_genomes_project 10 106721013 106732185 - Syt1 protein_coding retained_intron MGP_AJ_T0027024.1 MGP_AJ_G0017691.1 mouse_genomes_project 10 106721069 107108477 - MGP_AJ_P0027024 Syt1 protein_coding protein_coding MGP_AJ_T0027025.1 MGP_AJ_G0017691.1 mouse_genomes_project 10 106998081 107110335 - Syt1 protein_coding retained_intron MGP_AJ_T0027026.1 MGP_AJ_G0017691.1 mouse_genomes_project 10 106998298 107108466 - Syt1 protein_coding retained_intron MGP_AJ_T0024992.1 MGP_AJ_G0017148.1 mouse_genomes_project 10 38838160 38967094 + MGP_AJ_P0024992 Ak9 protein_coding unknown_likely_coding MGP_AJ_T0024993.1 MGP_AJ_G0017148.1 mouse_genomes_project 10 38838212 38880332 + MGP_AJ_P0024993 Ak9 protein_coding protein_coding MGP_AJ_T0024994.1 MGP_AJ_G0017148.1 mouse_genomes_project 10 38883897 38968340 + MGP_AJ_P0024994 Ak9 protein_coding protein_coding MGP_AJ_T0099256.1 MGP_AJ_G0037222.1 mouse_genomes_project 10 37250462 37250578 + Gm22105 snRNA snRNA MGP_AJ_T0099287.1 MGP_AJ_G0037253.1 mouse_genomes_project 10 89082938 89083041 + Gm25390 snRNA snRNA MGP_AJ_T0024502.1 MGP_AJ_G0016979.1 mouse_genomes_project 10 4813496 4851800 + MGP_AJ_P0024502 Zc3h12d protein_coding protein_coding MGP_AJ_T0000817.1 MGP_AJ_G0000753.1 mouse_genomes_project 10 70773583 70773976 - TEC TEC MGP_AJ_T0027569.1 MGP_AJ_G0017891.1 mouse_genomes_project 10 128169662 128170598 + MGP_AJ_P0027569 Olfr800 protein_coding protein_coding MGP_AJ_T0026572.1 MGP_AJ_G0017561.1 mouse_genomes_project 10 80803602 80835367 + MGP_AJ_P0026572 protein_coding protein_coding MGP_AJ_T0099270.1 MGP_AJ_G0037236.1 mouse_genomes_project 10 60445740 60445846 - Gm26479 snRNA snRNA MGP_AJ_T0027409.1 MGP_AJ_G0017822.1 mouse_genomes_project 10 126486770 126493889 + MGP_AJ_P0027409 Atp5b protein_coding protein_coding MGP_AJ_T0027410.1 MGP_AJ_G0017822.1 mouse_genomes_project 10 126486803 126487585 + Atp5b protein_coding processed_transcript MGP_AJ_T0027411.1 MGP_AJ_G0017822.1 mouse_genomes_project 10 126487931 126489447 + Atp5b protein_coding retained_intron MGP_AJ_T0027412.1 MGP_AJ_G0017822.1 mouse_genomes_project 10 126489243 126493658 + Atp5b protein_coding retained_intron MGP_AJ_T0027413.1 MGP_AJ_G0017822.1 mouse_genomes_project 10 126489727 126492650 + Atp5b protein_coding processed_transcript MGP_AJ_T0027414.1 MGP_AJ_G0017822.1 mouse_genomes_project 10 126491178 126492549 + Atp5b protein_coding retained_intron MGP_AJ_T0027415.1 MGP_AJ_G0017822.1 mouse_genomes_project 10 126491988 126493179 + Atp5b protein_coding retained_intron MGP_AJ_T0027416.1 MGP_AJ_G0017822.1 mouse_genomes_project 10 126492049 126493771 + Atp5b protein_coding processed_transcript MGP_AJ_T0027417.1 MGP_AJ_G0017822.1 mouse_genomes_project 10 126492538 126493770 + Atp5b protein_coding processed_transcript MGP_AJ_T0098381.1 MGP_AJ_G0036365.1 mouse_genomes_project 10 73167510 73168022 - pseudogene pseudogene MGP_AJ_T0027228.1 MGP_AJ_G0017762.1 mouse_genomes_project 10 120077101 120358926 - MGP_AJ_P0027228 Srgap1 protein_coding protein_coding MGP_AJ_T0027229.1 MGP_AJ_G0017762.1 mouse_genomes_project 10 120077101 120358919 - MGP_AJ_P0027229 Srgap1 protein_coding protein_coding MGP_AJ_T0027230.1 MGP_AJ_G0017762.1 mouse_genomes_project 10 120081351 120103198 - Srgap1 protein_coding processed_transcript MGP_AJ_T0027231.1 MGP_AJ_G0017762.1 mouse_genomes_project 10 120102732 120122135 - MGP_AJ_P0027231 Srgap1 protein_coding protein_coding MGP_AJ_T0027232.1 MGP_AJ_G0017762.1 mouse_genomes_project 10 120195054 120358926 - Srgap1 protein_coding retained_intron MGP_AJ_T0026775.1 MGP_AJ_G0017620.1 mouse_genomes_project 10 87965511 89044431 + MGP_AJ_P0026775 protein_coding protein_coding MGP_AJ_T0026776.1 MGP_AJ_G0017620.1 mouse_genomes_project 10 87965540 88581905 + MGP_AJ_P0026776 protein_coding protein_coding MGP_AJ_T0026777.1 MGP_AJ_G0017620.1 mouse_genomes_project 10 87965640 89040604 + MGP_AJ_P0026777 protein_coding nonsense_mediated_decay MGP_AJ_T0026778.1 MGP_AJ_G0017620.1 mouse_genomes_project 10 87965674 88754397 + MGP_AJ_P0026778 protein_coding protein_coding MGP_AJ_T0026779.1 MGP_AJ_G0017620.1 mouse_genomes_project 10 88082612 88120028 + protein_coding processed_transcript MGP_AJ_T0026780.1 MGP_AJ_G0017620.1 mouse_genomes_project 10 88135175 88158491 + protein_coding processed_transcript MGP_AJ_T0026781.1 MGP_AJ_G0017620.1 mouse_genomes_project 10 88158523 88166777 + MGP_AJ_P0026781 protein_coding protein_coding MGP_AJ_T0026782.1 MGP_AJ_G0017620.1 mouse_genomes_project 10 88647523 89047512 + MGP_AJ_P0026782 protein_coding protein_coding MGP_AJ_T0026783.1 MGP_AJ_G0017620.1 mouse_genomes_project 10 88648045 88992320 + MGP_AJ_P0026783 protein_coding protein_coding MGP_AJ_T0026784.1 MGP_AJ_G0017620.1 mouse_genomes_project 10 88648169 89044470 + MGP_AJ_P0026784 protein_coding protein_coding MGP_AJ_T0026785.1 MGP_AJ_G0017620.1 mouse_genomes_project 10 88648307 89045671 + MGP_AJ_P0026785 protein_coding protein_coding MGP_AJ_T0026786.1 MGP_AJ_G0017620.1 mouse_genomes_project 10 88648361 89045914 + MGP_AJ_P0026786 protein_coding protein_coding MGP_AJ_T0026787.1 MGP_AJ_G0017620.1 mouse_genomes_project 10 88648403 89044424 + MGP_AJ_P0026787 protein_coding protein_coding MGP_AJ_T0026788.1 MGP_AJ_G0017620.1 mouse_genomes_project 10 88648482 89045076 + MGP_AJ_P0026788 protein_coding protein_coding MGP_AJ_T0026789.1 MGP_AJ_G0017620.1 mouse_genomes_project 10 88648509 89045876 + MGP_AJ_P0026789 protein_coding protein_coding MGP_AJ_T0026790.1 MGP_AJ_G0017620.1 mouse_genomes_project 10 88648527 89045914 + MGP_AJ_P0026790 protein_coding protein_coding MGP_AJ_T0026791.1 MGP_AJ_G0017620.1 mouse_genomes_project 10 88648540 88672075 + protein_coding processed_transcript MGP_AJ_T0026792.1 MGP_AJ_G0017620.1 mouse_genomes_project 10 88648541 88658991 + MGP_AJ_P0026792 protein_coding protein_coding MGP_AJ_T0026793.1 MGP_AJ_G0017620.1 mouse_genomes_project 10 88648557 88659138 + MGP_AJ_P0026793 protein_coding protein_coding MGP_AJ_T0026794.1 MGP_AJ_G0017620.1 mouse_genomes_project 10 88648592 89045191 + MGP_AJ_P0026794 protein_coding protein_coding MGP_AJ_T0026795.1 MGP_AJ_G0017620.1 mouse_genomes_project 10 88648606 89046203 + MGP_AJ_P0026795 protein_coding protein_coding MGP_AJ_T0026796.1 MGP_AJ_G0017620.1 mouse_genomes_project 10 88648756 89044431 + MGP_AJ_P0026796 protein_coding protein_coding MGP_AJ_T0026797.1 MGP_AJ_G0017620.1 mouse_genomes_project 10 88648783 89044032 + MGP_AJ_P0026797 protein_coding protein_coding MGP_AJ_T0026798.1 MGP_AJ_G0017620.1 mouse_genomes_project 10 88901364 88968348 + protein_coding processed_transcript MGP_AJ_T0026799.1 MGP_AJ_G0017620.1 mouse_genomes_project 10 88901675 89044424 + MGP_AJ_P0026799 protein_coding protein_coding MGP_AJ_T0026800.1 MGP_AJ_G0017620.1 mouse_genomes_project 10 88901807 89045669 + MGP_AJ_P0026800 protein_coding protein_coding MGP_AJ_T0026801.1 MGP_AJ_G0017620.1 mouse_genomes_project 10 88902036 89045496 + MGP_AJ_P0026801 protein_coding protein_coding MGP_AJ_T0026802.1 MGP_AJ_G0017620.1 mouse_genomes_project 10 88902074 88985764 + protein_coding processed_transcript MGP_AJ_T0026803.1 MGP_AJ_G0017620.1 mouse_genomes_project 10 88902098 88992345 + protein_coding processed_transcript MGP_AJ_T0026804.1 MGP_AJ_G0017620.1 mouse_genomes_project 10 88966117 88994754 + MGP_AJ_P0026804 protein_coding protein_coding MGP_AJ_T0026805.1 MGP_AJ_G0017620.1 mouse_genomes_project 10 88966128 89045669 + MGP_AJ_P0026805 protein_coding protein_coding MGP_AJ_T0026806.1 MGP_AJ_G0017620.1 mouse_genomes_project 10 88966208 89044304 + MGP_AJ_P0026806 protein_coding protein_coding MGP_AJ_T0024510.1 MGP_AJ_G0016983.1 mouse_genomes_project 10 6538715 6541933 - MGP_AJ_P0024510 Gm9930 protein_coding protein_coding MGP_AJ_T0009633.1 MGP_AJ_G0007755.1 mouse_genomes_project 10 120961872 120961973 + Mir8104 miRNA miRNA MGP_AJ_T0024764.1 MGP_AJ_G0017055.1 mouse_genomes_project 10 21231088 21234100 + MGP_AJ_P0024764 Taar2 protein_coding protein_coding MGP_AJ_T0017092.1 MGP_AJ_G0015103.1 mouse_genomes_project 10 1331204 1346311 + Gm16153 processed_transcript processed_transcript MGP_AJ_T0026738.1 MGP_AJ_G0017609.1 mouse_genomes_project 10 86741079 86749292 - MGP_AJ_P0026738 Spic protein_coding protein_coding MGP_AJ_T0026739.1 MGP_AJ_G0017609.1 mouse_genomes_project 10 86741354 86749292 - MGP_AJ_P0026739 Spic protein_coding nonsense_mediated_decay MGP_AJ_T0026740.1 MGP_AJ_G0017609.1 mouse_genomes_project 10 86741977 86751199 - MGP_AJ_P0026740 Spic protein_coding protein_coding MGP_AJ_T0026741.1 MGP_AJ_G0017609.1 mouse_genomes_project 10 86744116 86749292 - Spic protein_coding retained_intron MGP_AJ_T0027511.1 MGP_AJ_G0017855.1 mouse_genomes_project 10 127172517 127195526 - MGP_AJ_P0027511 Dgka protein_coding protein_coding MGP_AJ_T0025289.1 MGP_AJ_G0017243.1 mouse_genomes_project 10 57578293 57599319 + Spock2 protein_coding retained_intron MGP_AJ_T0025290.1 MGP_AJ_G0017243.1 mouse_genomes_project 10 57578293 57607161 + MGP_AJ_P0025290 Spock2 protein_coding protein_coding MGP_AJ_T0025291.1 MGP_AJ_G0017243.1 mouse_genomes_project 10 57578542 57607167 + MGP_AJ_P0025291 Spock2 protein_coding unknown_likely_coding MGP_AJ_T0025292.1 MGP_AJ_G0017243.1 mouse_genomes_project 10 57578542 57605871 + MGP_AJ_P0025292 Spock2 protein_coding protein_coding MGP_AJ_T0003107.1 MGP_AJ_G0002889.1 mouse_genomes_project 10 126955317 126958691 + Gm29585 antisense antisense MGP_AJ_T0003108.1 MGP_AJ_G0002889.1 mouse_genomes_project 10 126957625 126958712 + Gm29585 antisense antisense MGP_AJ_T0003109.1 MGP_AJ_G0002889.1 mouse_genomes_project 10 126958382 126981955 + Gm29585 antisense antisense MGP_AJ_T0009575.1 MGP_AJ_G0007697.1 mouse_genomes_project 10 22232199 22232269 + Mir6905 miRNA miRNA MGP_AJ_T0100529.1 MGP_AJ_G0038495.1 mouse_genomes_project 10 60475235 60475364 - Gm25862 snoRNA snoRNA MGP_AJ_T0027104.1 MGP_AJ_G0017722.1 mouse_genomes_project 10 114677125 114774223 - MGP_AJ_P0027104 Cnot2 protein_coding protein_coding MGP_AJ_T0027105.1 MGP_AJ_G0017722.1 mouse_genomes_project 10 114677129 114740244 - MGP_AJ_P0027105 Cnot2 protein_coding protein_coding MGP_AJ_T0027106.1 MGP_AJ_G0017722.1 mouse_genomes_project 10 114677129 114774208 - MGP_AJ_P0027106 Cnot2 protein_coding nonsense_mediated_decay MGP_AJ_T0027107.1 MGP_AJ_G0017722.1 mouse_genomes_project 10 114677130 114774212 - MGP_AJ_P0027107 Cnot2 protein_coding protein_coding MGP_AJ_T0027108.1 MGP_AJ_G0017722.1 mouse_genomes_project 10 114677751 114774223 - MGP_AJ_P0027108 Cnot2 protein_coding protein_coding MGP_AJ_T0027109.1 MGP_AJ_G0017722.1 mouse_genomes_project 10 114678161 114774214 - MGP_AJ_P0027109 Cnot2 protein_coding protein_coding MGP_AJ_T0027110.1 MGP_AJ_G0017722.1 mouse_genomes_project 10 114678164 114728314 - MGP_AJ_P0027110 Cnot2 protein_coding protein_coding MGP_AJ_T0027111.1 MGP_AJ_G0017722.1 mouse_genomes_project 10 114689870 114774195 - Cnot2 protein_coding processed_transcript MGP_AJ_T0027112.1 MGP_AJ_G0017722.1 mouse_genomes_project 10 114690120 114774205 - Cnot2 protein_coding processed_transcript MGP_AJ_T0027113.1 MGP_AJ_G0017722.1 mouse_genomes_project 10 114691151 114774202 - Cnot2 protein_coding processed_transcript MGP_AJ_T0027114.1 MGP_AJ_G0017722.1 mouse_genomes_project 10 114691156 114774197 - Cnot2 protein_coding processed_transcript MGP_AJ_T0027115.1 MGP_AJ_G0017722.1 mouse_genomes_project 10 114695660 114774177 - MGP_AJ_P0027115 Cnot2 protein_coding nonsense_mediated_decay MGP_AJ_T0027116.1 MGP_AJ_G0017722.1 mouse_genomes_project 10 114698001 114774203 - Cnot2 protein_coding processed_transcript MGP_AJ_T0027117.1 MGP_AJ_G0017722.1 mouse_genomes_project 10 114701411 114774208 - Cnot2 protein_coding processed_transcript MGP_AJ_T0027118.1 MGP_AJ_G0017722.1 mouse_genomes_project 10 114701411 114774223 - MGP_AJ_P0027118 Cnot2 protein_coding protein_coding MGP_AJ_T0027119.1 MGP_AJ_G0017722.1 mouse_genomes_project 10 114701780 114774195 - Cnot2 protein_coding processed_transcript MGP_AJ_T0027009.1 MGP_AJ_G0017683.1 mouse_genomes_project 10 105020617 105213105 - MGP_AJ_P0027009 Acss3 protein_coding protein_coding MGP_AJ_T0027010.1 MGP_AJ_G0017683.1 mouse_genomes_project 10 105053131 105213105 - MGP_AJ_P0027010 Acss3 protein_coding protein_coding MGP_AJ_T0027011.1 MGP_AJ_G0017683.1 mouse_genomes_project 10 105195441 105213086 - Acss3 protein_coding processed_transcript MGP_AJ_T0026465.1 MGP_AJ_G0017539.1 mouse_genomes_project 10 79291709 79301853 - MGP_AJ_P0026465 Ncln protein_coding protein_coding MGP_AJ_T0026466.1 MGP_AJ_G0017539.1 mouse_genomes_project 10 79291917 79301787 - MGP_AJ_P0026466 Ncln protein_coding protein_coding MGP_AJ_T0026467.1 MGP_AJ_G0017539.1 mouse_genomes_project 10 79292558 79293858 - Ncln protein_coding retained_intron MGP_AJ_T0026468.1 MGP_AJ_G0017539.1 mouse_genomes_project 10 79292750 79293678 - MGP_AJ_P0026468 Ncln protein_coding protein_coding MGP_AJ_T0026469.1 MGP_AJ_G0017539.1 mouse_genomes_project 10 79292800 79294104 - Ncln protein_coding retained_intron MGP_AJ_T0026470.1 MGP_AJ_G0017539.1 mouse_genomes_project 10 79292840 79294102 - Ncln protein_coding retained_intron MGP_AJ_T0026471.1 MGP_AJ_G0017539.1 mouse_genomes_project 10 79293686 79295729 - Ncln protein_coding retained_intron MGP_AJ_T0026472.1 MGP_AJ_G0017539.1 mouse_genomes_project 10 79296385 79297516 - Ncln protein_coding retained_intron MGP_AJ_T0026473.1 MGP_AJ_G0017539.1 mouse_genomes_project 10 79298783 79301803 - Ncln protein_coding retained_intron MGP_AJ_T0012435.1 MGP_AJ_G0010530.1 mouse_genomes_project 10 79309939 79310233 + processed_pseudogene processed_pseudogene MGP_AJ_T0024877.1 MGP_AJ_G0017100.1 mouse_genomes_project 10 28850908 28968415 - MGP_AJ_P0024877 Rnf217 protein_coding protein_coding MGP_AJ_T0012425.1 MGP_AJ_G0010520.1 mouse_genomes_project 10 64779759 64797290 - processed_pseudogene processed_pseudogene MGP_AJ_T0027389.1 MGP_AJ_G0017814.1 mouse_genomes_project 10 126247637 126261524 + MGP_AJ_P0027389 Rdh19 protein_coding protein_coding MGP_AJ_T0026601.1 MGP_AJ_G0017569.1 mouse_genomes_project 10 81684001 81725854 + MGP_AJ_P0026601 1500009L16Rik protein_coding protein_coding MGP_AJ_T0027557.1 MGP_AJ_G0017882.1 mouse_genomes_project 10 127949558 127959887 + MGP_AJ_P0027557 Olfr786 protein_coding protein_coding MGP_AJ_T0027558.1 MGP_AJ_G0017882.1 mouse_genomes_project 10 127958948 127959887 + MGP_AJ_P0027558 Olfr786 protein_coding protein_coding MGP_AJ_T0099252.1 MGP_AJ_G0037218.1 mouse_genomes_project 10 27859630 27859732 + Gm22623 snRNA snRNA MGP_AJ_T0025982.1 MGP_AJ_G0017409.1 mouse_genomes_project 10 76550572 76551535 - MGP_AJ_P0025982 Olfr1356 protein_coding protein_coding MGP_AJ_T0025983.1 MGP_AJ_G0017409.1 mouse_genomes_project 10 76550572 76555788 - MGP_AJ_P0025983 Olfr1356 protein_coding protein_coding MGP_AJ_T0027390.1 MGP_AJ_G0017815.1 mouse_genomes_project 10 126266676 126276255 + MGP_AJ_P0027390 BC089597 protein_coding protein_coding MGP_AJ_T0026249.1 MGP_AJ_G0017479.1 mouse_genomes_project 10 78160546 78167229 - MGP_AJ_P0026249 Mbd3 protein_coding protein_coding MGP_AJ_T0026250.1 MGP_AJ_G0017479.1 mouse_genomes_project 10 78160547 78167548 - MGP_AJ_P0026250 Mbd3 protein_coding protein_coding MGP_AJ_T0026251.1 MGP_AJ_G0017479.1 mouse_genomes_project 10 78160847 78167420 - MGP_AJ_P0026251 Mbd3 protein_coding protein_coding MGP_AJ_T0026252.1 MGP_AJ_G0017479.1 mouse_genomes_project 10 78160990 78163727 - MGP_AJ_P0026252 Mbd3 protein_coding protein_coding MGP_AJ_T0026253.1 MGP_AJ_G0017479.1 mouse_genomes_project 10 78161902 78163334 - Mbd3 protein_coding processed_transcript MGP_AJ_T0027078.1 MGP_AJ_G0017714.1 mouse_genomes_project 10 113557572 113606774 + MGP_AJ_P0027078 Zfc3h1 protein_coding protein_coding MGP_AJ_T0027079.1 MGP_AJ_G0017714.1 mouse_genomes_project 10 113600628 113606773 + Zfc3h1 protein_coding retained_intron MGP_AJ_T0027080.1 MGP_AJ_G0017714.1 mouse_genomes_project 10 113601830 113604876 + Zfc3h1 protein_coding retained_intron MGP_AJ_T0027081.1 MGP_AJ_G0017714.1 mouse_genomes_project 10 113605080 113605764 + Zfc3h1 protein_coding retained_intron MGP_AJ_T0025279.1 MGP_AJ_G0017241.1 mouse_genomes_project 10 57455255 57471834 - MGP_AJ_P0025279 Anapc16 protein_coding protein_coding MGP_AJ_T0025280.1 MGP_AJ_G0017241.1 mouse_genomes_project 10 57455754 57471810 - MGP_AJ_P0025280 Anapc16 protein_coding protein_coding MGP_AJ_T0025281.1 MGP_AJ_G0017241.1 mouse_genomes_project 10 57456250 57458230 - Anapc16 protein_coding processed_transcript MGP_AJ_T0025282.1 MGP_AJ_G0017241.1 mouse_genomes_project 10 57456269 57471694 - MGP_AJ_P0025282 Anapc16 protein_coding protein_coding MGP_AJ_T0025283.1 MGP_AJ_G0017241.1 mouse_genomes_project 10 57456325 57471785 - MGP_AJ_P0025283 Anapc16 protein_coding protein_coding MGP_AJ_T0025284.1 MGP_AJ_G0017241.1 mouse_genomes_project 10 57456432 57471468 - MGP_AJ_P0025284 Anapc16 protein_coding protein_coding MGP_AJ_T0025285.1 MGP_AJ_G0017241.1 mouse_genomes_project 10 57458212 57458927 - Anapc16 protein_coding retained_intron MGP_AJ_T0025286.1 MGP_AJ_G0017241.1 mouse_genomes_project 10 57463428 57465890 - Anapc16 protein_coding retained_intron MGP_AJ_T0026926.1 MGP_AJ_G0017651.1 mouse_genomes_project 10 94108195 94212585 + MGP_AJ_P0026926 Eea1 protein_coding protein_coding MGP_AJ_T0026927.1 MGP_AJ_G0017651.1 mouse_genomes_project 10 94108481 94212582 + MGP_AJ_P0026927 Eea1 protein_coding unknown_likely_coding MGP_AJ_T0099257.1 MGP_AJ_G0037223.1 mouse_genomes_project 10 38920989 38921096 + Gm25626 snRNA snRNA MGP_AJ_T0017124.1 MGP_AJ_G0015112.1 mouse_genomes_project 10 77605889 77609465 - E130317F20Rik processed_transcript processed_transcript MGP_AJ_T0027510.1 MGP_AJ_G0017854.1 mouse_genomes_project 10 127156097 127172615 + MGP_AJ_P0027510 Pmel protein_coding protein_coding MGP_AJ_T0000814.1 MGP_AJ_G0000750.1 mouse_genomes_project 10 34629328 34629675 + TEC TEC MGP_AJ_T0100534.1 MGP_AJ_G0038500.1 mouse_genomes_project 10 75611657 75611733 - Gm22394 snoRNA snoRNA MGP_AJ_T0027203.1 MGP_AJ_G0017749.1 mouse_genomes_project 10 118492108 118498271 + MGP_AJ_P0027203 Llph protein_coding protein_coding MGP_AJ_T0026216.1 MGP_AJ_G0017471.1 mouse_genomes_project 10 78057918 78059554 + MGP_AJ_P0026216 Rps15 protein_coding protein_coding MGP_AJ_T0027570.1 MGP_AJ_G0017892.1 mouse_genomes_project 10 128180739 128182621 - MGP_AJ_P0027570 Olfr784 protein_coding protein_coding MGP_AJ_T0025175.1 MGP_AJ_G0017206.1 mouse_genomes_project 10 51169561 51260850 - MGP_AJ_P0025175 Mcm9 protein_coding protein_coding MGP_AJ_T0025176.1 MGP_AJ_G0017206.1 mouse_genomes_project 10 51170556 51227380 - MGP_AJ_P0025176 Mcm9 protein_coding unknown_likely_coding MGP_AJ_T0027050.1 MGP_AJ_G0017699.1 mouse_genomes_project 10 109594990 109597350 + MGP_AJ_P0027050 Phlda1 protein_coding protein_coding MGP_AJ_T0027051.1 MGP_AJ_G0017699.1 mouse_genomes_project 10 109596400 109596870 + Phlda1 protein_coding processed_transcript MGP_AJ_T0024940.1 MGP_AJ_G0017127.1 mouse_genomes_project 10 36648028 36660776 - MGP_AJ_P0024940 Wisp3 protein_coding protein_coding MGP_AJ_T0025089.1 MGP_AJ_G0017169.1 mouse_genomes_project 10 40799940 40989666 + MGP_AJ_P0025089 Pdss2 protein_coding nonsense_mediated_decay MGP_AJ_T0025090.1 MGP_AJ_G0017169.1 mouse_genomes_project 10 40799940 41033122 + MGP_AJ_P0025090 Pdss2 protein_coding protein_coding MGP_AJ_T0025091.1 MGP_AJ_G0017169.1 mouse_genomes_project 10 40799971 40930143 + Pdss2 protein_coding retained_intron MGP_AJ_T0025092.1 MGP_AJ_G0017169.1 mouse_genomes_project 10 40800054 41058223 + MGP_AJ_P0025092 Pdss2 protein_coding protein_coding MGP_AJ_T0025093.1 MGP_AJ_G0017169.1 mouse_genomes_project 10 40800190 40929740 + Pdss2 protein_coding retained_intron MGP_AJ_T0025094.1 MGP_AJ_G0017169.1 mouse_genomes_project 10 40978013 41032768 + MGP_AJ_P0025094 Pdss2 protein_coding protein_coding MGP_AJ_T0026574.1 MGP_AJ_G0017563.1 mouse_genomes_project 10 80924303 81136137 + MGP_AJ_P0026574 Chst11 protein_coding protein_coding MGP_AJ_T0026390.1 MGP_AJ_G0017523.1 mouse_genomes_project 10 79056075 79066590 + MGP_AJ_P0026390 Matk protein_coding protein_coding MGP_AJ_T0026391.1 MGP_AJ_G0017523.1 mouse_genomes_project 10 79060903 79066970 + MGP_AJ_P0026391 Matk protein_coding protein_coding MGP_AJ_T0026392.1 MGP_AJ_G0017523.1 mouse_genomes_project 10 79060903 79066970 + MGP_AJ_P0026392 Matk protein_coding nonsense_mediated_decay MGP_AJ_T0026393.1 MGP_AJ_G0017523.1 mouse_genomes_project 10 79060903 79066586 + MGP_AJ_P0026393 Matk protein_coding protein_coding MGP_AJ_T0026394.1 MGP_AJ_G0017523.1 mouse_genomes_project 10 79060909 79066586 + MGP_AJ_P0026394 Matk protein_coding protein_coding MGP_AJ_T0026395.1 MGP_AJ_G0017523.1 mouse_genomes_project 10 79060946 79066590 + Matk protein_coding retained_intron MGP_AJ_T0026396.1 MGP_AJ_G0017523.1 mouse_genomes_project 10 79061052 79064131 + Matk protein_coding retained_intron MGP_AJ_T0026397.1 MGP_AJ_G0017523.1 mouse_genomes_project 10 79061434 79063258 + MGP_AJ_P0026397 Matk protein_coding protein_coding MGP_AJ_T0026398.1 MGP_AJ_G0017523.1 mouse_genomes_project 10 79061522 79066580 + MGP_AJ_P0026398 Matk protein_coding protein_coding MGP_AJ_T0026399.1 MGP_AJ_G0017523.1 mouse_genomes_project 10 79061819 79066518 + Matk protein_coding retained_intron MGP_AJ_T0026400.1 MGP_AJ_G0017523.1 mouse_genomes_project 10 79064774 79066272 + Matk protein_coding retained_intron MGP_AJ_T0099299.1 MGP_AJ_G0037265.1 mouse_genomes_project 10 113161870 113161977 + Gm22070 snRNA snRNA MGP_AJ_T0024789.1 MGP_AJ_G0017072.1 mouse_genomes_project 10 22191496 22235229 + MGP_AJ_P0024789 Med23 protein_coding protein_coding MGP_AJ_T0024790.1 MGP_AJ_G0017072.1 mouse_genomes_project 10 22191547 22215819 + Med23 protein_coding retained_intron MGP_AJ_T0024791.1 MGP_AJ_G0017072.1 mouse_genomes_project 10 22191547 22228307 + MGP_AJ_P0024791 Med23 protein_coding nonsense_mediated_decay MGP_AJ_T0024792.1 MGP_AJ_G0017072.1 mouse_genomes_project 10 22191557 22235007 + MGP_AJ_P0024792 Med23 protein_coding protein_coding MGP_AJ_T0024793.1 MGP_AJ_G0017072.1 mouse_genomes_project 10 22191608 22219988 + Med23 protein_coding processed_transcript MGP_AJ_T0024794.1 MGP_AJ_G0017072.1 mouse_genomes_project 10 22191819 22199790 + MGP_AJ_P0024794 Med23 protein_coding protein_coding MGP_AJ_T0024795.1 MGP_AJ_G0017072.1 mouse_genomes_project 10 22192152 22197030 + Med23 protein_coding retained_intron MGP_AJ_T0024796.1 MGP_AJ_G0017072.1 mouse_genomes_project 10 22198304 22214071 + MGP_AJ_P0024796 Med23 protein_coding protein_coding MGP_AJ_T0024797.1 MGP_AJ_G0017072.1 mouse_genomes_project 10 22209893 22234566 + MGP_AJ_P0024797 Med23 protein_coding protein_coding MGP_AJ_T0024798.1 MGP_AJ_G0017072.1 mouse_genomes_project 10 22212403 22214063 + Med23 protein_coding retained_intron MGP_AJ_T0025196.1 MGP_AJ_G0017215.1 mouse_genomes_project 10 55219278 55236035 - MGP_AJ_P0025196 Serinc1 protein_coding protein_coding MGP_AJ_T0025197.1 MGP_AJ_G0017215.1 mouse_genomes_project 10 55226539 55235933 - MGP_AJ_P0025197 Serinc1 protein_coding protein_coding MGP_AJ_T0025198.1 MGP_AJ_G0017215.1 mouse_genomes_project 10 55226688 55235915 - MGP_AJ_P0025198 Serinc1 protein_coding nonsense_mediated_decay MGP_AJ_T0025199.1 MGP_AJ_G0017215.1 mouse_genomes_project 10 55228729 55235982 - Serinc1 protein_coding retained_intron MGP_AJ_T0025200.1 MGP_AJ_G0017215.1 mouse_genomes_project 10 55228735 55235914 - Serinc1 protein_coding retained_intron MGP_AJ_T0026292.1 MGP_AJ_G0017490.1 mouse_genomes_project 10 78431343 78446233 - MGP_AJ_P0026292 Btbd2 protein_coding protein_coding MGP_AJ_T0026293.1 MGP_AJ_G0017490.1 mouse_genomes_project 10 78431343 78445656 - MGP_AJ_P0026293 Btbd2 protein_coding protein_coding MGP_AJ_T0026294.1 MGP_AJ_G0017490.1 mouse_genomes_project 10 78431349 78433374 - Btbd2 protein_coding retained_intron MGP_AJ_T0026295.1 MGP_AJ_G0017490.1 mouse_genomes_project 10 78432857 78436353 - Btbd2 protein_coding retained_intron MGP_AJ_T0026296.1 MGP_AJ_G0017490.1 mouse_genomes_project 10 78433379 78445300 - MGP_AJ_P0026296 Btbd2 protein_coding protein_coding MGP_AJ_T0006100.1 MGP_AJ_G0005106.1 mouse_genomes_project 10 60908025 60922359 + Gm16145 lincRNA lincRNA MGP_AJ_T0025767.1 MGP_AJ_G0017343.1 mouse_genomes_project 10 73394654 73402230 - MGP_AJ_P0025767 Gstt4 protein_coding protein_coding MGP_AJ_T0025768.1 MGP_AJ_G0017343.1 mouse_genomes_project 10 73394655 73402214 - MGP_AJ_P0025768 Gstt4 protein_coding nonsense_mediated_decay MGP_AJ_T0012394.1 MGP_AJ_G0010489.1 mouse_genomes_project 10 19244779 19245719 + processed_pseudogene processed_pseudogene MGP_AJ_T0026883.1 MGP_AJ_G0017638.1 mouse_genomes_project 10 92053854 92088536 - MGP_AJ_P0026883 Vezt protein_coding protein_coding MGP_AJ_T0026884.1 MGP_AJ_G0017638.1 mouse_genomes_project 10 92075530 92149116 - MGP_AJ_P0026884 Vezt protein_coding protein_coding MGP_AJ_T0026885.1 MGP_AJ_G0017638.1 mouse_genomes_project 10 92082173 92149047 - MGP_AJ_P0026885 Vezt protein_coding protein_coding MGP_AJ_T0026886.1 MGP_AJ_G0017638.1 mouse_genomes_project 10 92085347 92149004 - MGP_AJ_P0026886 Vezt protein_coding protein_coding MGP_AJ_T0026887.1 MGP_AJ_G0017638.1 mouse_genomes_project 10 92085804 92149041 - MGP_AJ_P0026887 Vezt protein_coding protein_coding MGP_AJ_T0026888.1 MGP_AJ_G0017638.1 mouse_genomes_project 10 92098237 92110540 - MGP_AJ_P0026888 Vezt protein_coding nonsense_mediated_decay MGP_AJ_T0026889.1 MGP_AJ_G0017638.1 mouse_genomes_project 10 92100937 92149076 - MGP_AJ_P0026889 Vezt protein_coding nonsense_mediated_decay MGP_AJ_T0026890.1 MGP_AJ_G0017638.1 mouse_genomes_project 10 92107080 92149100 - MGP_AJ_P0026890 Vezt protein_coding protein_coding MGP_AJ_T0026891.1 MGP_AJ_G0017638.1 mouse_genomes_project 10 92110476 92134119 - MGP_AJ_P0026891 Vezt protein_coding protein_coding MGP_AJ_T0026892.1 MGP_AJ_G0017638.1 mouse_genomes_project 10 92115337 92149048 - Vezt protein_coding retained_intron MGP_AJ_T0026893.1 MGP_AJ_G0017638.1 mouse_genomes_project 10 92117512 92148966 - Vezt protein_coding processed_transcript MGP_AJ_T0027193.1 MGP_AJ_G0017748.1 mouse_genomes_project 10 118466480 118468091 + Tmbim4 protein_coding processed_transcript MGP_AJ_T0027194.1 MGP_AJ_G0017748.1 mouse_genomes_project 10 118466502 118468084 + Tmbim4 protein_coding processed_transcript MGP_AJ_T0027195.1 MGP_AJ_G0017748.1 mouse_genomes_project 10 118466548 118482300 + MGP_AJ_P0027195 Tmbim4 protein_coding protein_coding MGP_AJ_T0027196.1 MGP_AJ_G0017748.1 mouse_genomes_project 10 118467541 118468084 + Tmbim4 protein_coding processed_transcript MGP_AJ_T0027197.1 MGP_AJ_G0017748.1 mouse_genomes_project 10 118473603 118489986 + MGP_AJ_P0027197 Tmbim4 protein_coding protein_coding MGP_AJ_T0027198.1 MGP_AJ_G0017748.1 mouse_genomes_project 10 118473633 118482455 + MGP_AJ_P0027198 Tmbim4 protein_coding protein_coding MGP_AJ_T0027199.1 MGP_AJ_G0017748.1 mouse_genomes_project 10 118473646 118489908 + MGP_AJ_P0027199 Tmbim4 protein_coding nonsense_mediated_decay MGP_AJ_T0027200.1 MGP_AJ_G0017748.1 mouse_genomes_project 10 118486078 118489808 + Tmbim4 protein_coding retained_intron MGP_AJ_T0027201.1 MGP_AJ_G0017748.1 mouse_genomes_project 10 118487218 118489341 + Tmbim4 protein_coding retained_intron MGP_AJ_T0027202.1 MGP_AJ_G0017748.1 mouse_genomes_project 10 118487218 118489986 + Tmbim4 protein_coding retained_intron MGP_AJ_T0006076.1 MGP_AJ_G0005085.1 mouse_genomes_project 10 10967106 11008473 - Gm26835 lincRNA lincRNA MGP_AJ_T0025788.1 MGP_AJ_G0017352.1 mouse_genomes_project 10 73618171 73628661 + MGP_AJ_P0025788 Zfp280b protein_coding protein_coding MGP_AJ_T0006078.1 MGP_AJ_G0005087.1 mouse_genomes_project 10 15302351 15306122 + Gm10827 lincRNA lincRNA MGP_AJ_T0025842.1 MGP_AJ_G0017368.1 mouse_genomes_project 10 74617520 74627534 + MGP_AJ_P0025842 Gm10787 protein_coding protein_coding MGP_AJ_T0026205.1 MGP_AJ_G0017469.1 mouse_genomes_project 10 78022235 78025097 - MGP_AJ_P0026205 Gamt protein_coding protein_coding MGP_AJ_T0026206.1 MGP_AJ_G0017469.1 mouse_genomes_project 10 78022248 78025053 - MGP_AJ_P0026206 Gamt protein_coding protein_coding MGP_AJ_T0026207.1 MGP_AJ_G0017469.1 mouse_genomes_project 10 78022661 78025003 - Gamt protein_coding retained_intron MGP_AJ_T0026208.1 MGP_AJ_G0017469.1 mouse_genomes_project 10 78022877 78023374 - Gamt protein_coding retained_intron MGP_AJ_T0024978.1 MGP_AJ_G0017138.1 mouse_genomes_project 10 37755657 37764083 - MGP_AJ_P0024978 Gtf3c6 protein_coding protein_coding MGP_AJ_T0025518.1 MGP_AJ_G0017301.1 mouse_genomes_project 10 65058343 65063101 + MGP_AJ_P0025518 Egr2 protein_coding protein_coding MGP_AJ_T0025519.1 MGP_AJ_G0017301.1 mouse_genomes_project 10 65058451 65063236 + MGP_AJ_P0025519 Egr2 protein_coding protein_coding MGP_AJ_T0025520.1 MGP_AJ_G0017301.1 mouse_genomes_project 10 65060725 65065043 + MGP_AJ_P0025520 Egr2 protein_coding protein_coding MGP_AJ_T0025521.1 MGP_AJ_G0017301.1 mouse_genomes_project 10 65060726 65065043 + MGP_AJ_P0025521 Egr2 protein_coding protein_coding MGP_AJ_T0025522.1 MGP_AJ_G0017301.1 mouse_genomes_project 10 65060726 65061237 + MGP_AJ_P0025522 Egr2 protein_coding protein_coding MGP_AJ_T0025523.1 MGP_AJ_G0017301.1 mouse_genomes_project 10 65060786 65062796 + MGP_AJ_P0025523 Egr2 protein_coding protein_coding MGP_AJ_T0025524.1 MGP_AJ_G0017301.1 mouse_genomes_project 10 65061539 65065043 + MGP_AJ_P0025524 Egr2 protein_coding protein_coding MGP_AJ_T0024777.1 MGP_AJ_G0017068.1 mouse_genomes_project 10 21529075 21611058 + MGP_AJ_P0024777 Moxd1 protein_coding protein_coding MGP_AJ_T0024778.1 MGP_AJ_G0017068.1 mouse_genomes_project 10 21529103 21538208 + Moxd1 protein_coding processed_transcript MGP_AJ_T0024779.1 MGP_AJ_G0017068.1 mouse_genomes_project 10 21529369 21611053 + MGP_AJ_P0024779 Moxd1 protein_coding unknown_likely_coding MGP_AJ_T0025975.1 MGP_AJ_G0017404.1 mouse_genomes_project 10 76295317 76302730 - MGP_AJ_P0025975 Syde1 protein_coding protein_coding MGP_AJ_T0025996.1 MGP_AJ_G0017418.1 mouse_genomes_project 10 76898889 76980124 + MGP_AJ_P0025996 protein_coding protein_coding MGP_AJ_T0024775.1 MGP_AJ_G0017066.1 mouse_genomes_project 10 21414311 21415358 - MGP_AJ_P0024775 Taar9 protein_coding protein_coding MGP_AJ_T0024799.1 MGP_AJ_G0017073.1 mouse_genomes_project 10 22237154 22248686 - MGP_AJ_P0024799 Arg1 protein_coding protein_coding MGP_AJ_T0027259.1 MGP_AJ_G0017773.1 mouse_genomes_project 10 125344936 125365004 + MGP_AJ_P0027259 Avil protein_coding protein_coding MGP_AJ_T0027260.1 MGP_AJ_G0017773.1 mouse_genomes_project 10 125344966 125350570 + MGP_AJ_P0027260 Avil protein_coding protein_coding MGP_AJ_T0027261.1 MGP_AJ_G0017773.1 mouse_genomes_project 10 125347228 125350642 + MGP_AJ_P0027261 Avil protein_coding protein_coding MGP_AJ_T0027262.1 MGP_AJ_G0017773.1 mouse_genomes_project 10 125347362 125364788 + MGP_AJ_P0027262 Avil protein_coding protein_coding MGP_AJ_T0009649.1 MGP_AJ_G0007771.1 mouse_genomes_project 10 128092513 128092623 - Gm23252 miRNA miRNA MGP_AJ_T0025355.1 MGP_AJ_G0017258.1 mouse_genomes_project 10 58950528 58973605 - MGP_AJ_P0025355 Eif4ebp2 protein_coding protein_coding MGP_AJ_T0026187.1 MGP_AJ_G0017466.1 mouse_genomes_project 10 77941916 77952445 + MGP_AJ_P0026187 Efna2 protein_coding protein_coding MGP_AJ_T0027046.1 MGP_AJ_G0017696.1 mouse_genomes_project 10 109245197 109377474 + MGP_AJ_P0027046 Osbpl8 protein_coding protein_coding MGP_AJ_T0011789.1 MGP_AJ_G0009911.1 mouse_genomes_project 10 128216039 128216984 + MGP_AJ_P0011789 Olfr779 polymorphic_pseudogene polymorphic_pseudogene MGP_AJ_T0011790.1 MGP_AJ_G0009911.1 mouse_genomes_project 10 128216384 128216774 + MGP_AJ_P0011790 Olfr779 polymorphic_pseudogene protein_coding MGP_AJ_T0026454.1 MGP_AJ_G0017537.1 mouse_genomes_project 10 79200764 79232785 - MGP_AJ_P0026454 Nfic protein_coding protein_coding MGP_AJ_T0026455.1 MGP_AJ_G0017537.1 mouse_genomes_project 10 79203716 79232771 - MGP_AJ_P0026455 Nfic protein_coding protein_coding MGP_AJ_T0026456.1 MGP_AJ_G0017537.1 mouse_genomes_project 10 79203716 79232712 - MGP_AJ_P0026456 Nfic protein_coding protein_coding MGP_AJ_T0026457.1 MGP_AJ_G0017537.1 mouse_genomes_project 10 79203774 79205133 - Nfic protein_coding processed_transcript MGP_AJ_T0026458.1 MGP_AJ_G0017537.1 mouse_genomes_project 10 79205347 79212220 - MGP_AJ_P0026458 Nfic protein_coding protein_coding MGP_AJ_T0026459.1 MGP_AJ_G0017537.1 mouse_genomes_project 10 79205531 79236603 - MGP_AJ_P0026459 Nfic protein_coding protein_coding MGP_AJ_T0025852.1 MGP_AJ_G0017370.1 mouse_genomes_project 10 74658966 74776525 - MGP_AJ_P0025852 Col18a1 protein_coding protein_coding MGP_AJ_T0025853.1 MGP_AJ_G0017370.1 mouse_genomes_project 10 74658969 74721003 - MGP_AJ_P0025853 Col18a1 protein_coding protein_coding MGP_AJ_T0025854.1 MGP_AJ_G0017370.1 mouse_genomes_project 10 74659804 74721032 - MGP_AJ_P0025854 Col18a1 protein_coding protein_coding MGP_AJ_T0025855.1 MGP_AJ_G0017370.1 mouse_genomes_project 10 74687513 74696217 - MGP_AJ_P0025855 Col18a1 protein_coding protein_coding MGP_AJ_T0025856.1 MGP_AJ_G0017370.1 mouse_genomes_project 10 74703097 74721273 - MGP_AJ_P0025856 Col18a1 protein_coding protein_coding MGP_AJ_T0026722.1 MGP_AJ_G0017607.1 mouse_genomes_project 10 86519518 86533198 + MGP_AJ_P0026722 Sycp3 protein_coding protein_coding MGP_AJ_T0026723.1 MGP_AJ_G0017607.1 mouse_genomes_project 10 86519613 86533199 + MGP_AJ_P0026723 Sycp3 protein_coding protein_coding MGP_AJ_T0026724.1 MGP_AJ_G0017607.1 mouse_genomes_project 10 86519613 86533199 + MGP_AJ_P0026724 Sycp3 protein_coding nonsense_mediated_decay MGP_AJ_T0025163.1 MGP_AJ_G0017199.1 mouse_genomes_project 10 49979284 50025200 - MGP_AJ_P0025163 Gopc protein_coding protein_coding MGP_AJ_T0025164.1 MGP_AJ_G0017199.1 mouse_genomes_project 10 49979284 50025200 - MGP_AJ_P0025164 Gopc protein_coding protein_coding MGP_AJ_T0025165.1 MGP_AJ_G0017199.1 mouse_genomes_project 10 49981983 50024974 - MGP_AJ_P0025165 Gopc protein_coding unknown_likely_coding MGP_AJ_T0025811.1 MGP_AJ_G0017361.1 mouse_genomes_project 10 74059541 74114520 + MGP_AJ_P0025811 Mcm3ap protein_coding protein_coding MGP_AJ_T0011268.1 MGP_AJ_G0009390.1 mouse_genomes_project 10 38394361 38394604 - Gm22948 misc_RNA misc_RNA MGP_AJ_T0026312.1 MGP_AJ_G0017497.1 mouse_genomes_project 10 78589780 78596570 + MGP_AJ_P0026312 Sf3a2 protein_coding protein_coding MGP_AJ_T0026313.1 MGP_AJ_G0017497.1 mouse_genomes_project 10 78590314 78595590 + MGP_AJ_P0026313 Sf3a2 protein_coding protein_coding MGP_AJ_T0026314.1 MGP_AJ_G0017497.1 mouse_genomes_project 10 78590551 78593984 + MGP_AJ_P0026314 Sf3a2 protein_coding protein_coding MGP_AJ_T0026315.1 MGP_AJ_G0017497.1 mouse_genomes_project 10 78594082 78595600 + Sf3a2 protein_coding retained_intron MGP_AJ_T0098525.1 MGP_AJ_G0036509.1 mouse_genomes_project 10 38941660 38941765 - Gm27783 rRNA rRNA MGP_AJ_T0027295.1 MGP_AJ_G0017785.1 mouse_genomes_project 10 125527699 125535233 - MGP_AJ_P0027295 Arhgef25 protein_coding protein_coding MGP_AJ_T0027296.1 MGP_AJ_G0017785.1 mouse_genomes_project 10 125527699 125535002 - MGP_AJ_P0027296 Arhgef25 protein_coding protein_coding MGP_AJ_T0026747.1 MGP_AJ_G0017613.1 mouse_genomes_project 10 87023564 87328804 - MGP_AJ_P0026747 Ano4 protein_coding nonsense_mediated_decay MGP_AJ_T0026748.1 MGP_AJ_G0017613.1 mouse_genomes_project 10 87023565 87328604 - MGP_AJ_P0026748 Ano4 protein_coding protein_coding MGP_AJ_T0026749.1 MGP_AJ_G0017613.1 mouse_genomes_project 10 87023571 87328636 - MGP_AJ_P0026749 Ano4 protein_coding protein_coding MGP_AJ_T0026750.1 MGP_AJ_G0017613.1 mouse_genomes_project 10 87023572 87328314 - MGP_AJ_P0026750 Ano4 protein_coding protein_coding MGP_AJ_T0026751.1 MGP_AJ_G0017613.1 mouse_genomes_project 10 87051140 87067746 - MGP_AJ_P0026751 Ano4 protein_coding protein_coding MGP_AJ_T0026752.1 MGP_AJ_G0017613.1 mouse_genomes_project 10 87062466 87095227 - Ano4 protein_coding processed_transcript MGP_AJ_T0026753.1 MGP_AJ_G0017613.1 mouse_genomes_project 10 87085775 87328568 - Ano4 protein_coding retained_intron MGP_AJ_T0026754.1 MGP_AJ_G0017613.1 mouse_genomes_project 10 87105266 87415301 - MGP_AJ_P0026754 Ano4 protein_coding nonsense_mediated_decay MGP_AJ_T0026755.1 MGP_AJ_G0017613.1 mouse_genomes_project 10 87132482 87328604 - MGP_AJ_P0026755 Ano4 protein_coding nonsense_mediated_decay MGP_AJ_T0026756.1 MGP_AJ_G0017613.1 mouse_genomes_project 10 87133034 87328150 - MGP_AJ_P0026756 Ano4 protein_coding protein_coding MGP_AJ_T0026757.1 MGP_AJ_G0017613.1 mouse_genomes_project 10 87153365 87387976 - MGP_AJ_P0026757 Ano4 protein_coding protein_coding MGP_AJ_T0026758.1 MGP_AJ_G0017613.1 mouse_genomes_project 10 87405887 87415418 - Ano4 protein_coding processed_transcript MGP_AJ_T0024961.1 MGP_AJ_G0017131.1 mouse_genomes_project 10 37387943 37393403 - MGP_AJ_P0024961 Mfsd4b4 protein_coding protein_coding MGP_AJ_T0099296.1 MGP_AJ_G0037262.1 mouse_genomes_project 10 108975015 108975121 - Gm22236 snRNA snRNA MGP_AJ_T0006116.1 MGP_AJ_G0005116.1 mouse_genomes_project 10 78367953 78369984 + Gm26710 lincRNA lincRNA MGP_AJ_T0025902.1 MGP_AJ_G0017382.1 mouse_genomes_project 10 75345100 75345771 + MGP_AJ_P0025902 Krtap12-1 protein_coding protein_coding MGP_AJ_T0024417.1 MGP_AJ_G0016966.1 mouse_genomes_project 10 2747486 2851707 - MGP_AJ_P0024417 Rgs17 protein_coding protein_coding MGP_AJ_T0024418.1 MGP_AJ_G0016966.1 mouse_genomes_project 10 2747486 2851693 - MGP_AJ_P0024418 Rgs17 protein_coding protein_coding MGP_AJ_T0024419.1 MGP_AJ_G0016966.1 mouse_genomes_project 10 2754003 2851673 - MGP_AJ_P0024419 Rgs17 protein_coding protein_coding MGP_AJ_T0024420.1 MGP_AJ_G0016966.1 mouse_genomes_project 10 2755052 2851673 - MGP_AJ_P0024420 Rgs17 protein_coding protein_coding MGP_AJ_T0026519.1 MGP_AJ_G0017548.1 mouse_genomes_project 10 79435359 79445037 + MGP_AJ_P0026519 Ankrd24 protein_coding protein_coding MGP_AJ_T0026520.1 MGP_AJ_G0017548.1 mouse_genomes_project 10 79435398 79436499 + MGP_AJ_P0026520 Ankrd24 protein_coding protein_coding MGP_AJ_T0026521.1 MGP_AJ_G0017548.1 mouse_genomes_project 10 79435452 79454361 + MGP_AJ_P0026521 Ankrd24 protein_coding protein_coding MGP_AJ_T0026522.1 MGP_AJ_G0017548.1 mouse_genomes_project 10 79435525 79436494 + MGP_AJ_P0026522 Ankrd24 protein_coding protein_coding MGP_AJ_T0026523.1 MGP_AJ_G0017548.1 mouse_genomes_project 10 79440446 79449760 + MGP_AJ_P0026523 Ankrd24 protein_coding nonsense_mediated_decay MGP_AJ_T0026524.1 MGP_AJ_G0017548.1 mouse_genomes_project 10 79440450 79454358 + Ankrd24 protein_coding retained_intron MGP_AJ_T0026525.1 MGP_AJ_G0017548.1 mouse_genomes_project 10 79440450 79443158 + MGP_AJ_P0026525 Ankrd24 protein_coding protein_coding MGP_AJ_T0026526.1 MGP_AJ_G0017548.1 mouse_genomes_project 10 79440456 79442635 + Ankrd24 protein_coding retained_intron MGP_AJ_T0026527.1 MGP_AJ_G0017548.1 mouse_genomes_project 10 79440456 79446636 + MGP_AJ_P0026527 Ankrd24 protein_coding protein_coding MGP_AJ_T0026528.1 MGP_AJ_G0017548.1 mouse_genomes_project 10 79440464 79446980 + MGP_AJ_P0026528 Ankrd24 protein_coding protein_coding MGP_AJ_T0026529.1 MGP_AJ_G0017548.1 mouse_genomes_project 10 79447668 79449700 + MGP_AJ_P0026529 Ankrd24 protein_coding nonsense_mediated_decay MGP_AJ_T0026530.1 MGP_AJ_G0017548.1 mouse_genomes_project 10 79447680 79452718 + Ankrd24 protein_coding retained_intron MGP_AJ_T0026531.1 MGP_AJ_G0017548.1 mouse_genomes_project 10 79450551 79454225 + MGP_AJ_P0026531 Ankrd24 protein_coding protein_coding MGP_AJ_T0026532.1 MGP_AJ_G0017548.1 mouse_genomes_project 10 79453382 79453912 + Ankrd24 protein_coding retained_intron MGP_AJ_T0027062.1 MGP_AJ_G0017703.1 mouse_genomes_project 10 110195777 110221957 + MGP_AJ_P0027062 Glipr1l2 protein_coding protein_coding MGP_AJ_T0027063.1 MGP_AJ_G0017703.1 mouse_genomes_project 10 110195777 110222744 + MGP_AJ_P0027063 Glipr1l2 protein_coding protein_coding MGP_AJ_T0027258.1 MGP_AJ_G0017772.1 mouse_genomes_project 10 125335545 125340463 + MGP_AJ_P0027258 Ctdsp2 protein_coding protein_coding MGP_AJ_T0027455.1 MGP_AJ_G0017834.1 mouse_genomes_project 10 126747352 126751877 + MGP_AJ_P0027455 Cnpy2 protein_coding protein_coding MGP_AJ_T0011278.1 MGP_AJ_G0009400.1 mouse_genomes_project 10 90178256 90178418 - Gm27608 misc_RNA misc_RNA MGP_AJ_T0026916.1 MGP_AJ_G0017646.1 mouse_genomes_project 10 93305235 93458422 - MGP_AJ_P0026916 Cradd protein_coding protein_coding MGP_AJ_T0100558.1 MGP_AJ_G0038524.1 mouse_genomes_project 10 126774029 126774164 + Gm23182 snoRNA snoRNA MGP_AJ_T0025240.1 MGP_AJ_G0017229.1 mouse_genomes_project 10 56261027 56496488 + MGP_AJ_P0025240 Sh3rf3 protein_coding protein_coding MGP_AJ_T0025241.1 MGP_AJ_G0017229.1 mouse_genomes_project 10 56261126 56586734 + MGP_AJ_P0025241 Sh3rf3 protein_coding protein_coding MGP_AJ_T0025242.1 MGP_AJ_G0017229.1 mouse_genomes_project 10 56261727 56456970 + Sh3rf3 protein_coding retained_intron MGP_AJ_T0025243.1 MGP_AJ_G0017229.1 mouse_genomes_project 10 56512969 56552765 + Sh3rf3 protein_coding retained_intron MGP_AJ_T0025244.1 MGP_AJ_G0017229.1 mouse_genomes_project 10 56527372 56552243 + Sh3rf3 protein_coding processed_transcript MGP_AJ_T0026620.1 MGP_AJ_G0017578.1 mouse_genomes_project 10 83094007 83102600 - MGP_AJ_P0026620 Mterf2 protein_coding protein_coding MGP_AJ_T0026172.1 MGP_AJ_G0017463.1 mouse_genomes_project 10 77909921 77920108 + MGP_AJ_P0026172 Midn protein_coding protein_coding MGP_AJ_T0026173.1 MGP_AJ_G0017463.1 mouse_genomes_project 10 77909921 77920107 + MGP_AJ_P0026173 Midn protein_coding protein_coding MGP_AJ_T0026174.1 MGP_AJ_G0017463.1 mouse_genomes_project 10 77910852 77912019 + MGP_AJ_P0026174 Midn protein_coding protein_coding MGP_AJ_T0026175.1 MGP_AJ_G0017463.1 mouse_genomes_project 10 77911626 77915427 + Midn protein_coding processed_transcript MGP_AJ_T0026176.1 MGP_AJ_G0017463.1 mouse_genomes_project 10 77912196 77915608 + MGP_AJ_P0026176 Midn protein_coding protein_coding MGP_AJ_T0026177.1 MGP_AJ_G0017463.1 mouse_genomes_project 10 77912893 77916212 + MGP_AJ_P0026177 Midn protein_coding protein_coding MGP_AJ_T0026178.1 MGP_AJ_G0017463.1 mouse_genomes_project 10 77912977 77915436 + MGP_AJ_P0026178 Midn protein_coding protein_coding MGP_AJ_T0012423.1 MGP_AJ_G0010518.1 mouse_genomes_project 10 58825202 58825668 + processed_pseudogene processed_pseudogene MGP_AJ_T0024747.1 MGP_AJ_G0017047.1 mouse_genomes_project 10 20018208 20046672 - MGP_AJ_P0024747 Tbpl1 protein_coding protein_coding MGP_AJ_T0024748.1 MGP_AJ_G0017047.1 mouse_genomes_project 10 20019711 20047163 - MGP_AJ_P0024748 Tbpl1 protein_coding protein_coding MGP_AJ_T0024749.1 MGP_AJ_G0017047.1 mouse_genomes_project 10 20019853 20020716 - Tbpl1 protein_coding processed_transcript MGP_AJ_T0024750.1 MGP_AJ_G0017047.1 mouse_genomes_project 10 20026111 20046586 - Tbpl1 protein_coding retained_intron MGP_AJ_T0024910.1 MGP_AJ_G0017120.1 mouse_genomes_project 10 34004402 34337916 + MGP_AJ_P0024910 Hs3st5 protein_coding protein_coding MGP_AJ_T0024911.1 MGP_AJ_G0017120.1 mouse_genomes_project 10 34004407 34338532 + MGP_AJ_P0024911 Hs3st5 protein_coding protein_coding MGP_AJ_T0024912.1 MGP_AJ_G0017120.1 mouse_genomes_project 10 34004477 34200045 + Hs3st5 protein_coding retained_intron MGP_AJ_T0024913.1 MGP_AJ_G0017120.1 mouse_genomes_project 10 34004614 34338540 + MGP_AJ_P0024913 Hs3st5 protein_coding protein_coding MGP_AJ_T0024914.1 MGP_AJ_G0017120.1 mouse_genomes_project 10 34004995 34314431 + Hs3st5 protein_coding processed_transcript MGP_AJ_T0102214.1 MGP_AJ_G0039957.1 mouse_genomes_project 10 103624915 103625099 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0027602.1 MGP_AJ_G0017915.1 mouse_genomes_project 10 128633649 128638268 - MGP_AJ_P0027602 protein_coding protein_coding MGP_AJ_T0012393.1 MGP_AJ_G0010488.1 mouse_genomes_project 10 18349459 18350469 + processed_pseudogene processed_pseudogene MGP_AJ_T0024954.1 MGP_AJ_G0017130.1 mouse_genomes_project 10 37233265 37373085 + MGP_AJ_P0024954 Rev3l protein_coding protein_coding MGP_AJ_T0024955.1 MGP_AJ_G0017130.1 mouse_genomes_project 10 37233274 37373042 + MGP_AJ_P0024955 Rev3l protein_coding nonsense_mediated_decay MGP_AJ_T0024956.1 MGP_AJ_G0017130.1 mouse_genomes_project 10 37233511 37373080 + MGP_AJ_P0024956 Rev3l protein_coding protein_coding MGP_AJ_T0024957.1 MGP_AJ_G0017130.1 mouse_genomes_project 10 37322258 37373082 + MGP_AJ_P0024957 Rev3l protein_coding nonsense_mediated_decay MGP_AJ_T0024958.1 MGP_AJ_G0017130.1 mouse_genomes_project 10 37325401 37340697 + Rev3l protein_coding retained_intron MGP_AJ_T0024959.1 MGP_AJ_G0017130.1 mouse_genomes_project 10 37356798 37360844 + Rev3l protein_coding retained_intron MGP_AJ_T0024960.1 MGP_AJ_G0017130.1 mouse_genomes_project 10 37364982 37372362 + Rev3l protein_coding retained_intron MGP_AJ_T0100505.1 MGP_AJ_G0038471.1 mouse_genomes_project 10 12008633 12008763 + Gm23892 snoRNA snoRNA MGP_AJ_T0026092.1 MGP_AJ_G0017444.1 mouse_genomes_project 10 77641430 77643333 + MGP_AJ_P0026092 Elane protein_coding protein_coding MGP_AJ_T0025234.1 MGP_AJ_G0017224.1 mouse_genomes_project 10 55885194 55934805 + MGP_AJ_P0025234 Ranbp2 protein_coding protein_coding MGP_AJ_T0009621.1 MGP_AJ_G0007743.1 mouse_genomes_project 10 93705340 93705431 - Mir3058 miRNA miRNA MGP_AJ_T0100526.1 MGP_AJ_G0038492.1 mouse_genomes_project 10 56643583 56643710 + Gm23223 snoRNA snoRNA MGP_AJ_T0025778.1 MGP_AJ_G0017348.1 mouse_genomes_project 10 73506754 73507526 - MGP_AJ_P0025778 Mmp11 protein_coding nonsense_mediated_decay MGP_AJ_T0025779.1 MGP_AJ_G0017348.1 mouse_genomes_project 10 73506754 73516008 - MGP_AJ_P0025779 Mmp11 protein_coding protein_coding MGP_AJ_T0025780.1 MGP_AJ_G0017348.1 mouse_genomes_project 10 73506754 73516035 - MGP_AJ_P0025780 Mmp11 protein_coding protein_coding MGP_AJ_T0025781.1 MGP_AJ_G0017348.1 mouse_genomes_project 10 73506755 73509945 - MGP_AJ_P0025781 Mmp11 protein_coding protein_coding MGP_AJ_T0025782.1 MGP_AJ_G0017348.1 mouse_genomes_project 10 73510292 73511223 - Mmp11 protein_coding retained_intron MGP_AJ_T0006169.1 MGP_AJ_G0005149.1 mouse_genomes_project 10 127430303 127438686 + 9030616G12Rik lincRNA lincRNA MGP_AJ_T0027537.1 MGP_AJ_G0017867.1 mouse_genomes_project 10 127416123 127418827 - MGP_AJ_P0027537 Mettl7b protein_coding protein_coding MGP_AJ_T0012411.1 MGP_AJ_G0010506.1 mouse_genomes_project 10 40902325 40902680 + processed_pseudogene processed_pseudogene MGP_AJ_T0024702.1 MGP_AJ_G0017033.1 mouse_genomes_project 10 17402870 17417291 + MGP_AJ_P0024702 Mtfr2 protein_coding protein_coding MGP_AJ_T0024658.1 MGP_AJ_G0017018.1 mouse_genomes_project 10 15652272 15813722 - MGP_AJ_P0024658 Arfgef3 protein_coding protein_coding MGP_AJ_T0025391.1 MGP_AJ_G0017270.1 mouse_genomes_project 10 59666446 59668120 + MGP_AJ_P0025391 Neurog3 protein_coding protein_coding MGP_AJ_T0026179.1 MGP_AJ_G0017464.1 mouse_genomes_project 10 77928465 77932760 + MGP_AJ_P0026179 Cirbp protein_coding protein_coding MGP_AJ_T0026180.1 MGP_AJ_G0017464.1 mouse_genomes_project 10 77930243 77934099 + MGP_AJ_P0026180 Cirbp protein_coding protein_coding MGP_AJ_T0026181.1 MGP_AJ_G0017464.1 mouse_genomes_project 10 77930305 77935230 + MGP_AJ_P0026181 Cirbp protein_coding protein_coding MGP_AJ_T0026182.1 MGP_AJ_G0017464.1 mouse_genomes_project 10 77930328 77932573 + Cirbp protein_coding retained_intron MGP_AJ_T0026183.1 MGP_AJ_G0017464.1 mouse_genomes_project 10 77930351 77933581 + Cirbp protein_coding retained_intron MGP_AJ_T0026184.1 MGP_AJ_G0017464.1 mouse_genomes_project 10 77932670 77933648 + Cirbp protein_coding retained_intron MGP_AJ_T0026185.1 MGP_AJ_G0017464.1 mouse_genomes_project 10 77934425 77935142 + Cirbp protein_coding retained_intron MGP_AJ_T0027515.1 MGP_AJ_G0017858.1 mouse_genomes_project 10 127255105 127259440 - MGP_AJ_P0027515 Tmem198b protein_coding protein_coding MGP_AJ_T0027516.1 MGP_AJ_G0017858.1 mouse_genomes_project 10 127255174 127259031 - MGP_AJ_P0027516 Tmem198b protein_coding nonsense_mediated_decay MGP_AJ_T0027517.1 MGP_AJ_G0017858.1 mouse_genomes_project 10 127255910 127258787 - MGP_AJ_P0027517 Tmem198b protein_coding nonsense_mediated_decay MGP_AJ_T0025715.1 MGP_AJ_G0017332.1 mouse_genomes_project 10 72971622 73009666 + MGP_AJ_P0025715 Upb1 protein_coding protein_coding MGP_AJ_T0025716.1 MGP_AJ_G0017332.1 mouse_genomes_project 10 72971669 72991677 + Upb1 protein_coding retained_intron MGP_AJ_T0025717.1 MGP_AJ_G0017332.1 mouse_genomes_project 10 72974754 72995504 + Upb1 protein_coding retained_intron MGP_AJ_T0025719.1 MGP_AJ_G0017332.1 mouse_genomes_project 10 72995907 72998046 + Upb1 protein_coding retained_intron MGP_AJ_T0003027.1 MGP_AJ_G0002827.1 mouse_genomes_project 10 39079184 39081975 + Gm17196 antisense antisense MGP_AJ_T0100538.1 MGP_AJ_G0038504.1 mouse_genomes_project 10 90804538 90804681 - Gm24241 snoRNA snoRNA MGP_AJ_T0027004.1 MGP_AJ_G0017681.1 mouse_genomes_project 10 103945801 103952567 + Ccdc59 protein_coding retained_intron MGP_AJ_T0027005.1 MGP_AJ_G0017681.1 mouse_genomes_project 10 103945801 103952567 + MGP_AJ_P0027005 Ccdc59 protein_coding protein_coding MGP_AJ_T0027006.1 MGP_AJ_G0017681.1 mouse_genomes_project 10 103946238 103947717 + Ccdc59 protein_coding retained_intron MGP_AJ_T0027397.1 MGP_AJ_G0017818.1 mouse_genomes_project 10 126391704 126413671 - MGP_AJ_P0027397 Hsd17b6 protein_coding unknown_likely_coding MGP_AJ_T0003100.1 MGP_AJ_G0002882.1 mouse_genomes_project 10 118661949 118665147 + 9230105E05Rik antisense antisense MGP_AJ_T0025857.1 MGP_AJ_G0017371.1 mouse_genomes_project 10 74873026 74874474 - MGP_AJ_P0025857 Gm10941 protein_coding protein_coding MGP_AJ_T0027386.1 MGP_AJ_G0017812.1 mouse_genomes_project 10 126180894 126244274 + MGP_AJ_P0027386 protein_coding nonsense_mediated_decay MGP_AJ_T0027387.1 MGP_AJ_G0017812.1 mouse_genomes_project 10 126180895 126194841 + MGP_AJ_P0027387 protein_coding protein_coding MGP_AJ_T0026846.1 MGP_AJ_G0017627.1 mouse_genomes_project 10 91270566 91352607 + MGP_AJ_P0026846 Cdk17 protein_coding protein_coding MGP_AJ_T0003087.1 MGP_AJ_G0002874.1 mouse_genomes_project 10 112925921 112953283 + 4930473D10Rik antisense antisense MGP_AJ_T0003012.1 MGP_AJ_G0002817.1 mouse_genomes_project 10 11773913 11778035 - antisense antisense MGP_AJ_T0012427.1 MGP_AJ_G0010522.1 mouse_genomes_project 10 70793096 70794168 + processed_pseudogene processed_pseudogene MGP_AJ_T0006145.1 MGP_AJ_G0005131.1 mouse_genomes_project 10 92793398 92808298 - Cep83os lincRNA lincRNA MGP_AJ_T0025252.1 MGP_AJ_G0017234.1 mouse_genomes_project 10 56877997 56896748 - MGP_AJ_P0025252 Oit3 protein_coding protein_coding MGP_AJ_T0025253.1 MGP_AJ_G0017234.1 mouse_genomes_project 10 56883271 56886065 - Oit3 protein_coding retained_intron MGP_AJ_T0099273.1 MGP_AJ_G0037239.1 mouse_genomes_project 10 64748099 64748200 - Gm26359 snRNA snRNA MGP_AJ_T0024492.1 MGP_AJ_G0016977.1 mouse_genomes_project 10 4747408 4760561 - MGP_AJ_P0024492 Ginm1 protein_coding protein_coding MGP_AJ_T0024493.1 MGP_AJ_G0016977.1 mouse_genomes_project 10 4747411 4750034 - Ginm1 protein_coding retained_intron MGP_AJ_T0024494.1 MGP_AJ_G0016977.1 mouse_genomes_project 10 4747417 4760535 - MGP_AJ_P0024494 Ginm1 protein_coding protein_coding MGP_AJ_T0024495.1 MGP_AJ_G0016977.1 mouse_genomes_project 10 4758892 4772720 - Ginm1 protein_coding processed_transcript MGP_AJ_T0024496.1 MGP_AJ_G0016977.1 mouse_genomes_project 10 4771338 4772744 - Ginm1 protein_coding processed_transcript MGP_AJ_T0024497.1 MGP_AJ_G0016977.1 mouse_genomes_project 10 4772442 4772742 - MGP_AJ_P0024497 Ginm1 protein_coding protein_coding MGP_AJ_T0012437.1 MGP_AJ_G0010532.1 mouse_genomes_project 10 85084557 85084966 + processed_pseudogene processed_pseudogene MGP_AJ_T0025542.1 MGP_AJ_G0017309.1 mouse_genomes_project 10 66680464 66773393 + MGP_AJ_P0025542 Rhobtb1 protein_coding protein_coding MGP_AJ_T0025543.1 MGP_AJ_G0017309.1 mouse_genomes_project 10 66735458 66814388 + MGP_AJ_P0025543 Rhobtb1 protein_coding protein_coding MGP_AJ_T0025545.1 MGP_AJ_G0017309.1 mouse_genomes_project 10 66739533 66816279 + MGP_AJ_P0025545 Rhobtb1 protein_coding protein_coding MGP_AJ_T0025546.1 MGP_AJ_G0017309.1 mouse_genomes_project 10 66739556 66797178 + Rhobtb1 protein_coding retained_intron MGP_AJ_T0025547.1 MGP_AJ_G0017309.1 mouse_genomes_project 10 66739575 66814486 + MGP_AJ_P0025547 Rhobtb1 protein_coding protein_coding MGP_AJ_T0025548.1 MGP_AJ_G0017309.1 mouse_genomes_project 10 66739983 66789848 + MGP_AJ_P0025548 Rhobtb1 protein_coding protein_coding MGP_AJ_T0025549.1 MGP_AJ_G0017309.1 mouse_genomes_project 10 66740070 66773403 + MGP_AJ_P0025549 Rhobtb1 protein_coding protein_coding MGP_AJ_T0025550.1 MGP_AJ_G0017309.1 mouse_genomes_project 10 66740093 66816268 + MGP_AJ_P0025550 Rhobtb1 protein_coding protein_coding MGP_AJ_T0025551.1 MGP_AJ_G0017309.1 mouse_genomes_project 10 66742201 66814198 + MGP_AJ_P0025551 Rhobtb1 protein_coding nonsense_mediated_decay MGP_AJ_T0025552.1 MGP_AJ_G0017309.1 mouse_genomes_project 10 66746269 66773408 + MGP_AJ_P0025552 Rhobtb1 protein_coding protein_coding MGP_AJ_T0025553.1 MGP_AJ_G0017309.1 mouse_genomes_project 10 66789294 66793856 + Rhobtb1 protein_coding processed_transcript MGP_AJ_T0025554.1 MGP_AJ_G0017309.1 mouse_genomes_project 10 66803832 66814486 + MGP_AJ_P0025554 Rhobtb1 protein_coding protein_coding MGP_AJ_T0025555.1 MGP_AJ_G0017309.1 mouse_genomes_project 10 66803945 66811395 + Rhobtb1 protein_coding processed_transcript MGP_AJ_T0026619.1 MGP_AJ_G0017577.1 mouse_genomes_project 10 83077209 83092320 + MGP_AJ_P0026619 Tmem263 protein_coding protein_coding MGP_AJ_T0026773.1 MGP_AJ_G0017618.1 mouse_genomes_project 10 87802029 87821795 - MGP_AJ_P0026773 Actr6 protein_coding protein_coding MGP_AJ_T0009594.1 MGP_AJ_G0007716.1 mouse_genomes_project 10 73796810 73796894 - Mir678 miRNA miRNA MGP_AJ_T0026994.1 MGP_AJ_G0017679.1 mouse_genomes_project 10 103287755 103335765 - Tmtc2 protein_coding processed_transcript MGP_AJ_T0026995.1 MGP_AJ_G0017679.1 mouse_genomes_project 10 103287755 103678664 - MGP_AJ_P0026995 Tmtc2 protein_coding protein_coding MGP_AJ_T0026996.1 MGP_AJ_G0017679.1 mouse_genomes_project 10 103289597 103335750 - Tmtc2 protein_coding processed_transcript MGP_AJ_T0026997.1 MGP_AJ_G0017679.1 mouse_genomes_project 10 103289756 103299724 - Tmtc2 protein_coding processed_transcript MGP_AJ_T0026998.1 MGP_AJ_G0017679.1 mouse_genomes_project 10 103369425 103678680 - Tmtc2 protein_coding retained_intron MGP_AJ_T0026999.1 MGP_AJ_G0017679.1 mouse_genomes_project 10 103516191 103640275 - Tmtc2 protein_coding processed_transcript MGP_AJ_T0017125.1 MGP_AJ_G0015113.1 mouse_genomes_project 10 84773259 84774236 - Gm15344 processed_transcript processed_transcript MGP_AJ_T0025172.1 MGP_AJ_G0017204.1 mouse_genomes_project 10 50906222 51008263 - MGP_AJ_P0025172 Cep85l protein_coding protein_coding MGP_AJ_T0027068.1 MGP_AJ_G0017707.1 mouse_genomes_project 10 111091841 111094496 + MGP_AJ_P0027068 Gm26596 protein_coding protein_coding MGP_AJ_T0026864.1 MGP_AJ_G0017635.1 mouse_genomes_project 10 91760148 91764413 + MGP_AJ_P0026864 Ntn4 protein_coding protein_coding MGP_AJ_T0026865.1 MGP_AJ_G0017635.1 mouse_genomes_project 10 91760516 91864760 + MGP_AJ_P0026865 Ntn4 protein_coding protein_coding MGP_AJ_T0027591.1 MGP_AJ_G0017906.1 mouse_genomes_project 10 128394535 128395468 - MGP_AJ_P0027591 Olfr815 protein_coding protein_coding MGP_AJ_T0006094.1 MGP_AJ_G0005100.1 mouse_genomes_project 10 51702456 51707616 + Gm16998 lincRNA lincRNA MGP_AJ_T0025992.1 MGP_AJ_G0017415.1 mouse_genomes_project 10 76763836 76769750 + MGP_AJ_P0025992 Olfr1351 protein_coding protein_coding MGP_AJ_T0025993.1 MGP_AJ_G0017415.1 mouse_genomes_project 10 76768790 76769750 + MGP_AJ_P0025993 Olfr1351 protein_coding protein_coding MGP_AJ_T0006109.1 MGP_AJ_G0005111.1 mouse_genomes_project 10 64426904 64429602 + Gm26576 lincRNA lincRNA MGP_AJ_T0024963.1 MGP_AJ_G0017133.1 mouse_genomes_project 10 37449845 37462996 - MGP_AJ_P0024963 Mfsd4b3 protein_coding protein_coding MGP_AJ_T0026710.1 MGP_AJ_G0017604.1 mouse_genomes_project 10 86382421 86417057 - MGP_AJ_P0026710 Dram1 protein_coding protein_coding MGP_AJ_T0026711.1 MGP_AJ_G0017604.1 mouse_genomes_project 10 86382421 86416978 - MGP_AJ_P0026711 Dram1 protein_coding nonsense_mediated_decay MGP_AJ_T0026712.1 MGP_AJ_G0017604.1 mouse_genomes_project 10 86400104 86439018 - MGP_AJ_P0026712 Dram1 protein_coding protein_coding MGP_AJ_T0027546.1 MGP_AJ_G0017873.1 mouse_genomes_project 10 127706657 127707593 - MGP_AJ_P0027546 protein_coding protein_coding MGP_AJ_T0100503.1 MGP_AJ_G0038469.1 mouse_genomes_project 10 9316302 9316512 + Gm25139 snoRNA snoRNA MGP_AJ_T0025472.1 MGP_AJ_G0017288.1 mouse_genomes_project 10 60565971 60575080 - MGP_AJ_P0025472 Hnrnph3 protein_coding protein_coding MGP_AJ_T0025473.1 MGP_AJ_G0017288.1 mouse_genomes_project 10 60565971 60575080 - MGP_AJ_P0025473 Hnrnph3 protein_coding protein_coding MGP_AJ_T0025474.1 MGP_AJ_G0017288.1 mouse_genomes_project 10 60566735 60575403 - MGP_AJ_P0025474 Hnrnph3 protein_coding nonsense_mediated_decay MGP_AJ_T0025475.1 MGP_AJ_G0017288.1 mouse_genomes_project 10 60566738 60567476 - Hnrnph3 protein_coding retained_intron MGP_AJ_T0025476.1 MGP_AJ_G0017288.1 mouse_genomes_project 10 60567725 60569392 - Hnrnph3 protein_coding retained_intron MGP_AJ_T0025477.1 MGP_AJ_G0017288.1 mouse_genomes_project 10 60569114 60575033 - MGP_AJ_P0025477 Hnrnph3 protein_coding protein_coding MGP_AJ_T0027403.1 MGP_AJ_G0017820.1 mouse_genomes_project 10 126437240 126451453 + MGP_AJ_P0027403 Naca protein_coding protein_coding MGP_AJ_T0027404.1 MGP_AJ_G0017820.1 mouse_genomes_project 10 126437240 126451453 + MGP_AJ_P0027404 Naca protein_coding protein_coding MGP_AJ_T0027405.1 MGP_AJ_G0017820.1 mouse_genomes_project 10 126437491 126451448 + MGP_AJ_P0027405 Naca protein_coding unknown_likely_coding MGP_AJ_T0100545.1 MGP_AJ_G0038511.1 mouse_genomes_project 10 104163332 104163454 - Gm25342 snoRNA snoRNA MGP_AJ_T0025910.1 MGP_AJ_G0017388.1 mouse_genomes_project 10 75590165 75595127 - MGP_AJ_P0025910 Lrrc3 protein_coding protein_coding MGP_AJ_T0026941.1 MGP_AJ_G0017662.1 mouse_genomes_project 10 97271492 97363342 + MGP_AJ_P0026941 Poc1b protein_coding protein_coding MGP_AJ_T0026942.1 MGP_AJ_G0017662.1 mouse_genomes_project 10 97271538 97362406 + MGP_AJ_P0026942 Poc1b protein_coding protein_coding MGP_AJ_T0026943.1 MGP_AJ_G0017662.1 mouse_genomes_project 10 97271559 97363428 + MGP_AJ_P0026943 Poc1b protein_coding protein_coding MGP_AJ_T0026946.1 MGP_AJ_G0017662.1 mouse_genomes_project 10 97294678 97358143 + MGP_AJ_P0026946 Poc1b protein_coding nonsense_mediated_decay MGP_AJ_T0026947.1 MGP_AJ_G0017662.1 mouse_genomes_project 10 97336755 97362382 + Poc1b protein_coding processed_transcript MGP_AJ_T0026948.1 MGP_AJ_G0017662.1 mouse_genomes_project 10 97358245 97362204 + Poc1b protein_coding processed_transcript MGP_AJ_T0024607.1 MGP_AJ_G0017004.1 mouse_genomes_project 10 10966156 11152668 + MGP_AJ_P0024607 Hivep2 protein_coding protein_coding MGP_AJ_T0024608.1 MGP_AJ_G0017004.1 mouse_genomes_project 10 10966460 11153454 + MGP_AJ_P0024608 Hivep2 protein_coding protein_coding MGP_AJ_T0024609.1 MGP_AJ_G0017004.1 mouse_genomes_project 10 10966460 11153453 + MGP_AJ_P0024609 Hivep2 protein_coding protein_coding MGP_AJ_T0024610.1 MGP_AJ_G0017004.1 mouse_genomes_project 10 10966725 11130892 + MGP_AJ_P0024610 Hivep2 protein_coding protein_coding MGP_AJ_T0024611.1 MGP_AJ_G0017004.1 mouse_genomes_project 10 10967043 11005881 + Hivep2 protein_coding retained_intron MGP_AJ_T0024612.1 MGP_AJ_G0017004.1 mouse_genomes_project 10 10967106 11081084 + Hivep2 protein_coding processed_transcript MGP_AJ_T0026993.1 MGP_AJ_G0017678.1 mouse_genomes_project 10 101557891 101611011 + MGP_AJ_P0026993 Slc6a15 protein_coding unknown_likely_coding MGP_AJ_T0000810.1 MGP_AJ_G0000746.1 mouse_genomes_project 10 11315746 11316572 + TEC TEC MGP_AJ_T0027255.1 MGP_AJ_G0017770.1 mouse_genomes_project 10 124306123 124359522 + MGP_AJ_P0027255 Lrig3 protein_coding protein_coding MGP_AJ_T0027369.1 MGP_AJ_G0017804.1 mouse_genomes_project 10 126031912 126037712 - MGP_AJ_P0027369 Nab2 protein_coding protein_coding MGP_AJ_T0027370.1 MGP_AJ_G0017804.1 mouse_genomes_project 10 126031913 126037634 - MGP_AJ_P0027370 Nab2 protein_coding protein_coding MGP_AJ_T0027371.1 MGP_AJ_G0017804.1 mouse_genomes_project 10 126035926 126036483 - MGP_AJ_P0027371 Nab2 protein_coding protein_coding MGP_AJ_T0027372.1 MGP_AJ_G0017804.1 mouse_genomes_project 10 126035985 126039567 - MGP_AJ_P0027372 Nab2 protein_coding protein_coding MGP_AJ_T0012402.1 MGP_AJ_G0010497.1 mouse_genomes_project 10 28932972 28933586 - processed_pseudogene processed_pseudogene MGP_AJ_T0003053.1 MGP_AJ_G0002850.1 mouse_genomes_project 10 78046722 78047285 - Gm15122 antisense antisense MGP_AJ_T0100518.1 MGP_AJ_G0038484.1 mouse_genomes_project 10 37764919 37765133 + Rnu3a snoRNA snoRNA MGP_AJ_T0024868.1 MGP_AJ_G0017096.1 mouse_genomes_project 10 28196095 28206563 - MGP_AJ_P0024868 Hey2 protein_coding protein_coding MGP_AJ_T0100537.1 MGP_AJ_G0038503.1 mouse_genomes_project 10 89202366 89202612 - Gm24119 snoRNA snoRNA MGP_AJ_T0025487.1 MGP_AJ_G0017293.1 mouse_genomes_project 10 60869257 60938154 - MGP_AJ_P0025487 Sirt1 protein_coding protein_coding MGP_AJ_T0025488.1 MGP_AJ_G0017293.1 mouse_genomes_project 10 60869259 60893351 - MGP_AJ_P0025488 Sirt1 protein_coding protein_coding MGP_AJ_T0025489.1 MGP_AJ_G0017293.1 mouse_genomes_project 10 60869259 60893351 - MGP_AJ_P0025489 Sirt1 protein_coding protein_coding MGP_AJ_T0025490.1 MGP_AJ_G0017293.1 mouse_genomes_project 10 60869259 60891307 - MGP_AJ_P0025490 Sirt1 protein_coding nonsense_mediated_decay MGP_AJ_T0025491.1 MGP_AJ_G0017293.1 mouse_genomes_project 10 60869310 60893354 - MGP_AJ_P0025491 Sirt1 protein_coding protein_coding MGP_AJ_T0025492.1 MGP_AJ_G0017293.1 mouse_genomes_project 10 60872399 60875873 - Sirt1 protein_coding retained_intron MGP_AJ_T0025493.1 MGP_AJ_G0017293.1 mouse_genomes_project 10 60881636 60891307 - Sirt1 protein_coding retained_intron MGP_AJ_T0011285.1 MGP_AJ_G0009407.1 mouse_genomes_project 10 93750826 93751151 + Gm23776 misc_RNA misc_RNA MGP_AJ_T0099303.1 MGP_AJ_G0037269.1 mouse_genomes_project 10 125769857 125769966 - Gm23819 snRNA snRNA MGP_AJ_T0012418.1 MGP_AJ_G0010513.1 mouse_genomes_project 10 55311315 55311871 + processed_pseudogene processed_pseudogene MGP_AJ_T0027391.1 MGP_AJ_G0017816.1 mouse_genomes_project 10 126282903 126287578 - MGP_AJ_P0027391 Rdh7 protein_coding protein_coding MGP_AJ_T0027392.1 MGP_AJ_G0017816.1 mouse_genomes_project 10 126286234 126287091 - Rdh7 protein_coding processed_transcript MGP_AJ_T0024808.1 MGP_AJ_G0017075.1 mouse_genomes_project 10 22685193 22842705 + MGP_AJ_P0024808 Epb41l2 protein_coding protein_coding MGP_AJ_T0024809.1 MGP_AJ_G0017075.1 mouse_genomes_project 10 22685206 22810299 + MGP_AJ_P0024809 Epb41l2 protein_coding unknown_likely_coding MGP_AJ_T0024810.1 MGP_AJ_G0017075.1 mouse_genomes_project 10 22734326 22842705 + MGP_AJ_P0024810 Epb41l2 protein_coding protein_coding MGP_AJ_T0024811.1 MGP_AJ_G0017075.1 mouse_genomes_project 10 22812223 22844169 + MGP_AJ_P0024811 Epb41l2 protein_coding unknown_likely_coding MGP_AJ_T0025441.1 MGP_AJ_G0017281.1 mouse_genomes_project 10 60157324 60192581 - MGP_AJ_P0025441 Ddx50 protein_coding unknown_likely_coding MGP_AJ_T0025442.1 MGP_AJ_G0017281.1 mouse_genomes_project 10 60157327 60192596 - MGP_AJ_P0025442 Ddx50 protein_coding protein_coding MGP_AJ_T0100508.1 MGP_AJ_G0038474.1 mouse_genomes_project 10 21091033 21091107 - Snord100 snoRNA snoRNA MGP_AJ_T0025809.1 MGP_AJ_G0017359.1 mouse_genomes_project 10 74040152 74048744 + MGP_AJ_P0025809 2610028H24Rik protein_coding protein_coding MGP_AJ_T0017093.1 MGP_AJ_G0015104.1 mouse_genomes_project 10 4720846 4739353 - Gm20470 processed_transcript processed_transcript MGP_AJ_T0003097.1 MGP_AJ_G0002880.1 mouse_genomes_project 10 118005489 118021189 - Grip1os2 antisense antisense MGP_AJ_T0027353.1 MGP_AJ_G0017801.1 mouse_genomes_project 10 125893864 125903010 - MGP_AJ_P0027353 Nxph4 protein_coding protein_coding MGP_AJ_T0025637.1 MGP_AJ_G0017321.1 mouse_genomes_project 10 68868453 68883274 - MGP_AJ_P0025637 Cisd1 protein_coding protein_coding MGP_AJ_T0011272.1 MGP_AJ_G0009394.1 mouse_genomes_project 10 60471359 60471642 + Gm22803 misc_RNA misc_RNA MGP_AJ_T0024771.1 MGP_AJ_G0017062.1 mouse_genomes_project 10 21320479 21321556 + MGP_AJ_P0024771 Taar7d protein_coding protein_coding MGP_AJ_T0025907.1 MGP_AJ_G0017387.1 mouse_genomes_project 10 75510324 75573573 + MGP_AJ_P0025907 Tspear protein_coding protein_coding MGP_AJ_T0025908.1 MGP_AJ_G0017387.1 mouse_genomes_project 10 75510389 75578840 + MGP_AJ_P0025908 Tspear protein_coding protein_coding MGP_AJ_T0025909.1 MGP_AJ_G0017387.1 mouse_genomes_project 10 75554537 75557957 + Tspear protein_coding retained_intron MGP_AJ_T0027251.1 MGP_AJ_G0017767.1 mouse_genomes_project 10 121403538 121490446 - MGP_AJ_P0027251 Usp15 protein_coding protein_coding MGP_AJ_T0012429.1 MGP_AJ_G0010524.1 mouse_genomes_project 10 72423196 72423628 - processed_pseudogene processed_pseudogene MGP_AJ_T0025957.1 MGP_AJ_G0017396.1 mouse_genomes_project 10 75870657 75884894 - MGP_AJ_P0025957 Pwp2 protein_coding protein_coding MGP_AJ_T0099242.1 MGP_AJ_G0037208.1 mouse_genomes_project 10 2291554 2291661 + Gm23573 snRNA snRNA MGP_AJ_T0003032.1 MGP_AJ_G0002832.1 mouse_genomes_project 10 42933503 42935610 - Gm15934 antisense antisense MGP_AJ_T0026257.1 MGP_AJ_G0017481.1 mouse_genomes_project 10 78179221 78203335 - MGP_AJ_P0026257 Tcf3 protein_coding protein_coding MGP_AJ_T0026258.1 MGP_AJ_G0017481.1 mouse_genomes_project 10 78179221 78203345 - MGP_AJ_P0026258 Tcf3 protein_coding protein_coding MGP_AJ_T0026259.1 MGP_AJ_G0017481.1 mouse_genomes_project 10 78179254 78203341 - MGP_AJ_P0026259 Tcf3 protein_coding protein_coding MGP_AJ_T0026260.1 MGP_AJ_G0017481.1 mouse_genomes_project 10 78179254 78203345 - MGP_AJ_P0026260 Tcf3 protein_coding protein_coding MGP_AJ_T0026261.1 MGP_AJ_G0017481.1 mouse_genomes_project 10 78179315 78203319 - MGP_AJ_P0026261 Tcf3 protein_coding protein_coding MGP_AJ_T0026262.1 MGP_AJ_G0017481.1 mouse_genomes_project 10 78179315 78203319 - MGP_AJ_P0026262 Tcf3 protein_coding protein_coding MGP_AJ_T0026263.1 MGP_AJ_G0017481.1 mouse_genomes_project 10 78179327 78200714 - MGP_AJ_P0026263 Tcf3 protein_coding protein_coding MGP_AJ_T0026264.1 MGP_AJ_G0017481.1 mouse_genomes_project 10 78179333 78203333 - MGP_AJ_P0026264 Tcf3 protein_coding protein_coding MGP_AJ_T0026265.1 MGP_AJ_G0017481.1 mouse_genomes_project 10 78179333 78203333 - MGP_AJ_P0026265 Tcf3 protein_coding protein_coding MGP_AJ_T0026266.1 MGP_AJ_G0017481.1 mouse_genomes_project 10 78179761 78200687 - MGP_AJ_P0026266 Tcf3 protein_coding protein_coding MGP_AJ_T0026267.1 MGP_AJ_G0017481.1 mouse_genomes_project 10 78179761 78200784 - MGP_AJ_P0026267 Tcf3 protein_coding protein_coding MGP_AJ_T0026268.1 MGP_AJ_G0017481.1 mouse_genomes_project 10 78182334 78185195 - Tcf3 protein_coding processed_transcript MGP_AJ_T0026269.1 MGP_AJ_G0017481.1 mouse_genomes_project 10 78184950 78185996 - Tcf3 protein_coding retained_intron MGP_AJ_T0026270.1 MGP_AJ_G0017481.1 mouse_genomes_project 10 78189790 78191568 - MGP_AJ_P0026270 Tcf3 protein_coding protein_coding MGP_AJ_T0009645.1 MGP_AJ_G0007767.1 mouse_genomes_project 10 126886945 126887034 + Mir8105 miRNA miRNA MGP_AJ_T0006092.1 MGP_AJ_G0005098.1 mouse_genomes_project 10 39139557 39142388 - Gm29095 lincRNA lincRNA MGP_AJ_T0026774.1 MGP_AJ_G0017619.1 mouse_genomes_project 10 87834763 87910580 + MGP_AJ_P0026774 Uhrf1bp1l protein_coding protein_coding MGP_AJ_T0026833.1 MGP_AJ_G0017625.1 mouse_genomes_project 10 90800441 90838183 - MGP_AJ_P0026833 Nedd1 protein_coding protein_coding MGP_AJ_T0024800.1 MGP_AJ_G0017074.1 mouse_genomes_project 10 22493258 22561787 - Akap7 protein_coding processed_transcript MGP_AJ_T0024801.1 MGP_AJ_G0017074.1 mouse_genomes_project 10 22493258 22523301 - MGP_AJ_P0024801 Akap7 protein_coding protein_coding MGP_AJ_T0024802.1 MGP_AJ_G0017074.1 mouse_genomes_project 10 22494285 22623922 - MGP_AJ_P0024802 Akap7 protein_coding protein_coding MGP_AJ_T0024803.1 MGP_AJ_G0017074.1 mouse_genomes_project 10 22541054 22614360 - MGP_AJ_P0024803 Akap7 protein_coding unknown_likely_coding MGP_AJ_T0024804.1 MGP_AJ_G0017074.1 mouse_genomes_project 10 22591838 22620855 - MGP_AJ_P0024804 Akap7 protein_coding protein_coding MGP_AJ_T0024805.1 MGP_AJ_G0017074.1 mouse_genomes_project 10 22603959 22623865 - MGP_AJ_P0024805 Akap7 protein_coding protein_coding MGP_AJ_T0024806.1 MGP_AJ_G0017074.1 mouse_genomes_project 10 22608553 22621827 - MGP_AJ_P0024806 Akap7 protein_coding protein_coding MGP_AJ_T0024807.1 MGP_AJ_G0017074.1 mouse_genomes_project 10 22608654 22632343 - MGP_AJ_P0024807 Akap7 protein_coding protein_coding MGP_AJ_T0024371.1 MGP_AJ_G0016953.1 mouse_genomes_project 10 890140 1077121 + MGP_AJ_P0024371 Mthfd1l protein_coding protein_coding MGP_AJ_T0024372.1 MGP_AJ_G0016953.1 mouse_genomes_project 10 890153 1088243 + MGP_AJ_P0024372 Mthfd1l protein_coding protein_coding MGP_AJ_T0024373.1 MGP_AJ_G0016953.1 mouse_genomes_project 10 890166 1077121 + MGP_AJ_P0024373 Mthfd1l protein_coding protein_coding MGP_AJ_T0024374.1 MGP_AJ_G0016953.1 mouse_genomes_project 10 950122 968180 + Mthfd1l protein_coding processed_transcript MGP_AJ_T0017094.1 MGP_AJ_G0015105.1 mouse_genomes_project 10 17577194 17580033 - 4930403O15Rik processed_transcript processed_transcript MGP_AJ_T0025784.1 MGP_AJ_G0017350.1 mouse_genomes_project 10 73526599 73534107 + MGP_AJ_P0025784 Vpreb3 protein_coding protein_coding MGP_AJ_T0025785.1 MGP_AJ_G0017350.1 mouse_genomes_project 10 73532769 73534127 + MGP_AJ_P0025785 Vpreb3 protein_coding protein_coding MGP_AJ_T0027481.1 MGP_AJ_G0017845.1 mouse_genomes_project 10 126978555 126984370 - MGP_AJ_P0027481 Zc3h10 protein_coding protein_coding MGP_AJ_T0027482.1 MGP_AJ_G0017845.1 mouse_genomes_project 10 126981393 126984339 - Zc3h10 protein_coding processed_transcript MGP_AJ_T0027483.1 MGP_AJ_G0017845.1 mouse_genomes_project 10 126981675 126984235 - Zc3h10 protein_coding processed_transcript MGP_AJ_T0027484.1 MGP_AJ_G0017845.1 mouse_genomes_project 10 126981933 126984321 - Zc3h10 protein_coding processed_transcript MGP_AJ_T0027603.1 MGP_AJ_G0017916.1 mouse_genomes_project 10 128700832 128706456 - MGP_AJ_P0027603 protein_coding protein_coding MGP_AJ_T0027492.1 MGP_AJ_G0017847.1 mouse_genomes_project 10 126998090 127006259 - MGP_AJ_P0027492 Pa2g4 protein_coding protein_coding MGP_AJ_T0027493.1 MGP_AJ_G0017847.1 mouse_genomes_project 10 126999762 127006152 - MGP_AJ_P0027493 Pa2g4 protein_coding protein_coding MGP_AJ_T0027494.1 MGP_AJ_G0017847.1 mouse_genomes_project 10 127003476 127006194 - Pa2g4 protein_coding retained_intron MGP_AJ_T0027496.1 MGP_AJ_G0017849.1 mouse_genomes_project 10 127066564 127074045 - MGP_AJ_P0027496 Rps26 protein_coding protein_coding MGP_AJ_T0027066.1 MGP_AJ_G0017706.1 mouse_genomes_project 10 111088723 111092336 - MGP_AJ_P0027066 Atxn7l3b protein_coding protein_coding MGP_AJ_T0027067.1 MGP_AJ_G0017706.1 mouse_genomes_project 10 111091129 111092342 - Atxn7l3b protein_coding processed_transcript MGP_AJ_T0024555.1 MGP_AJ_G0016996.1 mouse_genomes_project 10 10054841 10128031 + MGP_AJ_P0024555 Plagl1 protein_coding protein_coding MGP_AJ_T0024556.1 MGP_AJ_G0016996.1 mouse_genomes_project 10 10085725 10125537 + Plagl1 protein_coding processed_transcript MGP_AJ_T0024557.1 MGP_AJ_G0016996.1 mouse_genomes_project 10 10085746 10125692 + Plagl1 protein_coding processed_transcript MGP_AJ_T0024558.1 MGP_AJ_G0016996.1 mouse_genomes_project 10 10085822 10125576 + Plagl1 protein_coding processed_transcript MGP_AJ_T0024559.1 MGP_AJ_G0016996.1 mouse_genomes_project 10 10085822 10132023 + MGP_AJ_P0024559 Plagl1 protein_coding protein_coding MGP_AJ_T0024560.1 MGP_AJ_G0016996.1 mouse_genomes_project 10 10085866 10113641 + Plagl1 protein_coding processed_transcript MGP_AJ_T0024561.1 MGP_AJ_G0016996.1 mouse_genomes_project 10 10085866 10116156 + Plagl1 protein_coding processed_transcript MGP_AJ_T0024562.1 MGP_AJ_G0016996.1 mouse_genomes_project 10 10085866 10116215 + Plagl1 protein_coding processed_transcript MGP_AJ_T0024563.1 MGP_AJ_G0016996.1 mouse_genomes_project 10 10085866 10116138 + Plagl1 protein_coding processed_transcript MGP_AJ_T0024564.1 MGP_AJ_G0016996.1 mouse_genomes_project 10 10085866 10116198 + Plagl1 protein_coding processed_transcript MGP_AJ_T0024565.1 MGP_AJ_G0016996.1 mouse_genomes_project 10 10085866 10125657 + Plagl1 protein_coding processed_transcript MGP_AJ_T0024566.1 MGP_AJ_G0016996.1 mouse_genomes_project 10 10085866 10103930 + Plagl1 protein_coding processed_transcript MGP_AJ_T0024567.1 MGP_AJ_G0016996.1 mouse_genomes_project 10 10085866 10116154 + Plagl1 protein_coding processed_transcript MGP_AJ_T0024568.1 MGP_AJ_G0016996.1 mouse_genomes_project 10 10085866 10101403 + Plagl1 protein_coding retained_intron MGP_AJ_T0024569.1 MGP_AJ_G0016996.1 mouse_genomes_project 10 10085866 10125594 + Plagl1 protein_coding processed_transcript MGP_AJ_T0024570.1 MGP_AJ_G0016996.1 mouse_genomes_project 10 10085866 10125576 + Plagl1 protein_coding processed_transcript MGP_AJ_T0024571.1 MGP_AJ_G0016996.1 mouse_genomes_project 10 10085866 10111986 + Plagl1 protein_coding processed_transcript MGP_AJ_T0024572.1 MGP_AJ_G0016996.1 mouse_genomes_project 10 10085866 10131608 + MGP_AJ_P0024572 Plagl1 protein_coding protein_coding MGP_AJ_T0024573.1 MGP_AJ_G0016996.1 mouse_genomes_project 10 10085869 10131608 + MGP_AJ_P0024573 Plagl1 protein_coding protein_coding MGP_AJ_T0024574.1 MGP_AJ_G0016996.1 mouse_genomes_project 10 10085875 10112882 + Plagl1 protein_coding retained_intron MGP_AJ_T0024575.1 MGP_AJ_G0016996.1 mouse_genomes_project 10 10085908 10112222 + Plagl1 protein_coding retained_intron MGP_AJ_T0024576.1 MGP_AJ_G0016996.1 mouse_genomes_project 10 10085908 10112322 + Plagl1 protein_coding retained_intron MGP_AJ_T0024577.1 MGP_AJ_G0016996.1 mouse_genomes_project 10 10086047 10125707 + MGP_AJ_P0024577 Plagl1 protein_coding protein_coding MGP_AJ_T0024578.1 MGP_AJ_G0016996.1 mouse_genomes_project 10 10112902 10128018 + MGP_AJ_P0024578 Plagl1 protein_coding protein_coding MGP_AJ_T0024579.1 MGP_AJ_G0016996.1 mouse_genomes_project 10 10115797 10125744 + MGP_AJ_P0024579 Plagl1 protein_coding protein_coding MGP_AJ_T0026003.1 MGP_AJ_G0017423.1 mouse_genomes_project 10 77290096 77304907 - MGP_AJ_P0026003 Mier2 protein_coding protein_coding MGP_AJ_T0026004.1 MGP_AJ_G0017423.1 mouse_genomes_project 10 77290096 77305015 - MGP_AJ_P0026004 Mier2 protein_coding protein_coding MGP_AJ_T0026005.1 MGP_AJ_G0017423.1 mouse_genomes_project 10 77290097 77291812 - MGP_AJ_P0026005 Mier2 protein_coding protein_coding MGP_AJ_T0026006.1 MGP_AJ_G0017423.1 mouse_genomes_project 10 77290772 77292017 - Mier2 protein_coding retained_intron MGP_AJ_T0026007.1 MGP_AJ_G0017423.1 mouse_genomes_project 10 77291519 77294622 - Mier2 protein_coding retained_intron MGP_AJ_T0026008.1 MGP_AJ_G0017423.1 mouse_genomes_project 10 77292318 77294204 - Mier2 protein_coding processed_transcript MGP_AJ_T0026009.1 MGP_AJ_G0017423.1 mouse_genomes_project 10 77298689 77304930 - MGP_AJ_P0026009 Mier2 protein_coding nonsense_mediated_decay MGP_AJ_T0026010.1 MGP_AJ_G0017423.1 mouse_genomes_project 10 77298761 77304700 - MGP_AJ_P0026010 Mier2 protein_coding protein_coding MGP_AJ_T0026011.1 MGP_AJ_G0017423.1 mouse_genomes_project 10 77298768 77304937 - MGP_AJ_P0026011 Mier2 protein_coding protein_coding MGP_AJ_T0026012.1 MGP_AJ_G0017423.1 mouse_genomes_project 10 77298793 77300697 - MGP_AJ_P0026012 Mier2 protein_coding protein_coding MGP_AJ_T0026013.1 MGP_AJ_G0017423.1 mouse_genomes_project 10 77299445 77304893 - MGP_AJ_P0026013 Mier2 protein_coding protein_coding MGP_AJ_T0026014.1 MGP_AJ_G0017423.1 mouse_genomes_project 10 77299523 77304421 - MGP_AJ_P0026014 Mier2 protein_coding protein_coding MGP_AJ_T0025822.1 MGP_AJ_G0017364.1 mouse_genomes_project 10 74169744 74183472 + MGP_AJ_P0025822 Ftcd protein_coding protein_coding MGP_AJ_T0025823.1 MGP_AJ_G0017364.1 mouse_genomes_project 10 74169748 74184249 + Ftcd protein_coding retained_intron MGP_AJ_T0025824.1 MGP_AJ_G0017364.1 mouse_genomes_project 10 74169802 74184260 + MGP_AJ_P0025824 Ftcd protein_coding unknown_likely_coding MGP_AJ_T0025825.1 MGP_AJ_G0017364.1 mouse_genomes_project 10 74181043 74182479 + Ftcd protein_coding processed_transcript MGP_AJ_T0026415.1 MGP_AJ_G0017528.1 mouse_genomes_project 10 79124727 79129876 + MGP_AJ_P0026415 Cactin protein_coding protein_coding MGP_AJ_T0025729.1 MGP_AJ_G0017335.1 mouse_genomes_project 10 73138960 73153635 + MGP_AJ_P0025729 Ggt1 protein_coding protein_coding MGP_AJ_T0025730.1 MGP_AJ_G0017335.1 mouse_genomes_project 10 73139011 73153682 + MGP_AJ_P0025730 Ggt1 protein_coding protein_coding MGP_AJ_T0025731.1 MGP_AJ_G0017335.1 mouse_genomes_project 10 73141504 73151681 + MGP_AJ_P0025731 Ggt1 protein_coding protein_coding MGP_AJ_T0025732.1 MGP_AJ_G0017335.1 mouse_genomes_project 10 73141511 73153635 + MGP_AJ_P0025732 Ggt1 protein_coding protein_coding MGP_AJ_T0025733.1 MGP_AJ_G0017335.1 mouse_genomes_project 10 73143649 73156297 + MGP_AJ_P0025733 Ggt1 protein_coding protein_coding MGP_AJ_T0025734.1 MGP_AJ_G0017335.1 mouse_genomes_project 10 73143654 73156745 + MGP_AJ_P0025734 Ggt1 protein_coding protein_coding MGP_AJ_T0025735.1 MGP_AJ_G0017335.1 mouse_genomes_project 10 73145990 73156662 + MGP_AJ_P0025735 Ggt1 protein_coding protein_coding MGP_AJ_T0025736.1 MGP_AJ_G0017335.1 mouse_genomes_project 10 73145997 73153682 + MGP_AJ_P0025736 Ggt1 protein_coding protein_coding MGP_AJ_T0025737.1 MGP_AJ_G0017335.1 mouse_genomes_project 10 73146012 73163580 + MGP_AJ_P0025737 Ggt1 protein_coding protein_coding MGP_AJ_T0025738.1 MGP_AJ_G0017335.1 mouse_genomes_project 10 73146013 73153434 + MGP_AJ_P0025738 Ggt1 protein_coding protein_coding MGP_AJ_T0025739.1 MGP_AJ_G0017335.1 mouse_genomes_project 10 73146018 73153682 + MGP_AJ_P0025739 Ggt1 protein_coding protein_coding MGP_AJ_T0025740.1 MGP_AJ_G0017335.1 mouse_genomes_project 10 73146030 73153349 + MGP_AJ_P0025740 Ggt1 protein_coding protein_coding MGP_AJ_T0025741.1 MGP_AJ_G0017335.1 mouse_genomes_project 10 73148880 73156300 + MGP_AJ_P0025741 Ggt1 protein_coding protein_coding MGP_AJ_T0025742.1 MGP_AJ_G0017335.1 mouse_genomes_project 10 73148885 73156740 + MGP_AJ_P0025742 Ggt1 protein_coding protein_coding MGP_AJ_T0025743.1 MGP_AJ_G0017335.1 mouse_genomes_project 10 73148924 73158813 + Ggt1 protein_coding processed_transcript MGP_AJ_T0025744.1 MGP_AJ_G0017335.1 mouse_genomes_project 10 73150802 73163562 + MGP_AJ_P0025744 Ggt1 protein_coding protein_coding MGP_AJ_T0025745.1 MGP_AJ_G0017335.1 mouse_genomes_project 10 73151240 73156763 + MGP_AJ_P0025745 Ggt1 protein_coding protein_coding MGP_AJ_T0025746.1 MGP_AJ_G0017335.1 mouse_genomes_project 10 73153455 73162283 + MGP_AJ_P0025746 Ggt1 protein_coding protein_coding MGP_AJ_T0025747.1 MGP_AJ_G0017335.1 mouse_genomes_project 10 73158749 73163538 + MGP_AJ_P0025747 Ggt1 protein_coding protein_coding MGP_AJ_T0025748.1 MGP_AJ_G0017335.1 mouse_genomes_project 10 73162484 73163571 + Ggt1 protein_coding retained_intron MGP_AJ_T0012440.1 MGP_AJ_G0010535.1 mouse_genomes_project 10 94654190 94655099 + processed_pseudogene processed_pseudogene MGP_AJ_T0009586.1 MGP_AJ_G0007708.1 mouse_genomes_project 10 57684006 57684073 - Gm22117 miRNA miRNA MGP_AJ_T0009611.1 MGP_AJ_G0007733.1 mouse_genomes_project 10 79310088 79310185 + Gm25595 miRNA miRNA MGP_AJ_T0026944.1 MGP_AJ_G0017663.1 mouse_genomes_project 10 97272615 97277704 + MGP_AJ_P0026944 Galnt4 protein_coding protein_coding MGP_AJ_T0003035.1 MGP_AJ_G0002835.1 mouse_genomes_project 10 59876917 59886513 + Hk1os antisense antisense MGP_AJ_T0003036.1 MGP_AJ_G0002835.1 mouse_genomes_project 10 59877268 59887176 + Hk1os antisense antisense MGP_AJ_T0003037.1 MGP_AJ_G0002835.1 mouse_genomes_project 10 59877283 59900360 + Hk1os antisense antisense MGP_AJ_T0027016.1 MGP_AJ_G0017687.1 mouse_genomes_project 10 105603478 105807062 - MGP_AJ_P0027016 Ptprq protein_coding protein_coding MGP_AJ_T0026852.1 MGP_AJ_G0017630.1 mouse_genomes_project 10 91604131 91634414 + MGP_AJ_P0026852 Hal protein_coding protein_coding MGP_AJ_T0026853.1 MGP_AJ_G0017630.1 mouse_genomes_project 10 91604166 91631618 + MGP_AJ_P0026853 Hal protein_coding nonsense_mediated_decay MGP_AJ_T0026854.1 MGP_AJ_G0017630.1 mouse_genomes_project 10 91611494 91615797 + Hal protein_coding retained_intron MGP_AJ_T0026855.1 MGP_AJ_G0017630.1 mouse_genomes_project 10 91616264 91631838 + Hal protein_coding processed_transcript MGP_AJ_T0003025.1 MGP_AJ_G0002826.1 mouse_genomes_project 10 37856565 37858161 - Cdk19os antisense antisense MGP_AJ_T0003026.1 MGP_AJ_G0002826.1 mouse_genomes_project 10 37857149 37858161 - Cdk19os antisense antisense MGP_AJ_T0025293.1 MGP_AJ_G0017244.1 mouse_genomes_project 10 57654290 57692082 - MGP_AJ_P0025293 Chst3 protein_coding protein_coding MGP_AJ_T0025294.1 MGP_AJ_G0017244.1 mouse_genomes_project 10 57654292 57661466 - MGP_AJ_P0025294 Chst3 protein_coding protein_coding MGP_AJ_T0025295.1 MGP_AJ_G0017244.1 mouse_genomes_project 10 57658363 57667063 - MGP_AJ_P0025295 Chst3 protein_coding protein_coding MGP_AJ_T0003016.1 MGP_AJ_G0002820.1 mouse_genomes_project 10 19110597 19116174 + antisense antisense MGP_AJ_T0099258.1 MGP_AJ_G0037224.1 mouse_genomes_project 10 42229800 42229888 - Gm22087 snRNA snRNA MGP_AJ_T0025394.1 MGP_AJ_G0017272.1 mouse_genomes_project 10 59789043 59802492 + MGP_AJ_P0025394 Tacr2 protein_coding protein_coding MGP_AJ_T0025990.1 MGP_AJ_G0017414.1 mouse_genomes_project 10 76730578 76734249 + MGP_AJ_P0025990 Olfr1352 protein_coding protein_coding MGP_AJ_T0025991.1 MGP_AJ_G0017414.1 mouse_genomes_project 10 76730643 76733786 + MGP_AJ_P0025991 Olfr1352 protein_coding protein_coding MGP_AJ_T0024949.1 MGP_AJ_G0017129.1 mouse_genomes_project 10 37112260 37155381 + MGP_AJ_P0024949 Traf3ip2 protein_coding protein_coding MGP_AJ_T0024950.1 MGP_AJ_G0017129.1 mouse_genomes_project 10 37141225 37146179 + Traf3ip2 protein_coding retained_intron MGP_AJ_T0024951.1 MGP_AJ_G0017129.1 mouse_genomes_project 10 37146543 37151341 + Traf3ip2 protein_coding processed_transcript MGP_AJ_T0024952.1 MGP_AJ_G0017129.1 mouse_genomes_project 10 37147134 37154897 + Traf3ip2 protein_coding retained_intron MGP_AJ_T0024953.1 MGP_AJ_G0017129.1 mouse_genomes_project 10 37150975 37154899 + Traf3ip2 protein_coding retained_intron MGP_AJ_T0003029.1 MGP_AJ_G0002829.1 mouse_genomes_project 10 40262608 40263091 - Gm15200 antisense antisense MGP_AJ_T0026687.1 MGP_AJ_G0017599.1 mouse_genomes_project 10 85928322 86000870 + MGP_AJ_P0026687 Igf1 protein_coding protein_coding MGP_AJ_T0026688.1 MGP_AJ_G0017599.1 mouse_genomes_project 10 85929122 86007016 + MGP_AJ_P0026688 Igf1 protein_coding protein_coding MGP_AJ_T0026689.1 MGP_AJ_G0017599.1 mouse_genomes_project 10 85929312 86001776 + MGP_AJ_P0026689 Igf1 protein_coding protein_coding MGP_AJ_T0026690.1 MGP_AJ_G0017599.1 mouse_genomes_project 10 85929544 86000868 + MGP_AJ_P0026690 Igf1 protein_coding protein_coding MGP_AJ_T0026691.1 MGP_AJ_G0017599.1 mouse_genomes_project 10 85929665 85985373 + MGP_AJ_P0026691 Igf1 protein_coding protein_coding MGP_AJ_T0026692.1 MGP_AJ_G0017599.1 mouse_genomes_project 10 85930084 85985918 + MGP_AJ_P0026692 Igf1 protein_coding protein_coding MGP_AJ_T0026693.1 MGP_AJ_G0017599.1 mouse_genomes_project 10 85930660 86000874 + MGP_AJ_P0026693 Igf1 protein_coding protein_coding MGP_AJ_T0026694.1 MGP_AJ_G0017599.1 mouse_genomes_project 10 85931383 86000852 + MGP_AJ_P0026694 Igf1 protein_coding protein_coding MGP_AJ_T0027123.1 MGP_AJ_G0017725.1 mouse_genomes_project 10 115150783 115167079 - MGP_AJ_P0027123 Gm10271 protein_coding protein_coding MGP_AJ_T0009578.1 MGP_AJ_G0007700.1 mouse_genomes_project 10 39200881 39200936 + Mir3473b miRNA miRNA MGP_AJ_T0006098.1 MGP_AJ_G0005104.1 mouse_genomes_project 10 58555916 58561948 - Gm20610 lincRNA lincRNA MGP_AJ_T0024470.1 MGP_AJ_G0016973.1 mouse_genomes_project 10 4607325 4640618 - MGP_AJ_P0024470 Pcmt1 protein_coding nonsense_mediated_decay MGP_AJ_T0024471.1 MGP_AJ_G0016973.1 mouse_genomes_project 10 4607325 4640962 - MGP_AJ_P0024471 Pcmt1 protein_coding protein_coding MGP_AJ_T0024472.1 MGP_AJ_G0016973.1 mouse_genomes_project 10 4607333 4640657 - MGP_AJ_P0024472 Pcmt1 protein_coding protein_coding MGP_AJ_T0024473.1 MGP_AJ_G0016973.1 mouse_genomes_project 10 4613977 4625979 - MGP_AJ_P0024473 Pcmt1 protein_coding protein_coding MGP_AJ_T0024474.1 MGP_AJ_G0016973.1 mouse_genomes_project 10 4613977 4640615 - MGP_AJ_P0024474 Pcmt1 protein_coding protein_coding MGP_AJ_T0024475.1 MGP_AJ_G0016973.1 mouse_genomes_project 10 4615906 4640962 - Pcmt1 protein_coding retained_intron MGP_AJ_T0024476.1 MGP_AJ_G0016973.1 mouse_genomes_project 10 4620574 4658628 - MGP_AJ_P0024476 Pcmt1 protein_coding protein_coding MGP_AJ_T0024477.1 MGP_AJ_G0016973.1 mouse_genomes_project 10 4624417 4628949 - MGP_AJ_P0024477 Pcmt1 protein_coding nonsense_mediated_decay MGP_AJ_T0024478.1 MGP_AJ_G0016973.1 mouse_genomes_project 10 4624442 4658622 - MGP_AJ_P0024478 Pcmt1 protein_coding protein_coding MGP_AJ_T0024479.1 MGP_AJ_G0016973.1 mouse_genomes_project 10 4625788 4640618 - Pcmt1 protein_coding retained_intron MGP_AJ_T0025147.1 MGP_AJ_G0017192.1 mouse_genomes_project 10 49227196 49232257 - MGP_AJ_P0025147 Fam162b protein_coding protein_coding MGP_AJ_T0025900.1 MGP_AJ_G0017380.1 mouse_genomes_project 10 75335971 75336524 + MGP_AJ_P0025900 Gm10024 protein_coding protein_coding MGP_AJ_T0003071.1 MGP_AJ_G0002863.1 mouse_genomes_project 10 84145774 84162109 + 4930486F22Rik antisense antisense MGP_AJ_T0027221.1 MGP_AJ_G0017760.1 mouse_genomes_project 10 119937893 119974711 + MGP_AJ_P0027221 D930020B18Rik protein_coding protein_coding MGP_AJ_T0027222.1 MGP_AJ_G0017760.1 mouse_genomes_project 10 119938006 119991997 + MGP_AJ_P0027222 D930020B18Rik protein_coding nonsense_mediated_decay MGP_AJ_T0027223.1 MGP_AJ_G0017760.1 mouse_genomes_project 10 119938099 119991726 + MGP_AJ_P0027223 D930020B18Rik protein_coding protein_coding MGP_AJ_T0027224.1 MGP_AJ_G0017760.1 mouse_genomes_project 10 119938177 119991726 + MGP_AJ_P0027224 D930020B18Rik protein_coding protein_coding MGP_AJ_T0025022.1 MGP_AJ_G0017154.1 mouse_genomes_project 10 39064268 39078272 - Ccdc162 protein_coding processed_transcript MGP_AJ_T0025023.1 MGP_AJ_G0017154.1 mouse_genomes_project 10 39064271 39136145 - MGP_AJ_P0025023 Ccdc162 protein_coding protein_coding MGP_AJ_T0025024.1 MGP_AJ_G0017154.1 mouse_genomes_project 10 39064271 39117426 - MGP_AJ_P0025024 Ccdc162 protein_coding protein_coding MGP_AJ_T0025025.1 MGP_AJ_G0017154.1 mouse_genomes_project 10 39064714 39242486 - MGP_AJ_P0025025 Ccdc162 protein_coding unknown_likely_coding MGP_AJ_T0025026.1 MGP_AJ_G0017154.1 mouse_genomes_project 10 39064837 39104812 - MGP_AJ_P0025026 Ccdc162 protein_coding protein_coding MGP_AJ_T0025027.1 MGP_AJ_G0017154.1 mouse_genomes_project 10 39074350 39086100 - Ccdc162 protein_coding retained_intron MGP_AJ_T0025028.1 MGP_AJ_G0017154.1 mouse_genomes_project 10 39076030 39241839 - MGP_AJ_P0025028 Ccdc162 protein_coding protein_coding MGP_AJ_T0025029.1 MGP_AJ_G0017154.1 mouse_genomes_project 10 39076149 39078840 - Ccdc162 protein_coding retained_intron MGP_AJ_T0025030.1 MGP_AJ_G0017154.1 mouse_genomes_project 10 39105828 39117718 - Ccdc162 protein_coding processed_transcript MGP_AJ_T0026332.1 MGP_AJ_G0017507.1 mouse_genomes_project 10 78723686 78725829 + MGP_AJ_P0026332 Gadd45b protein_coding protein_coding MGP_AJ_T0100500.1 MGP_AJ_G0038466.1 mouse_genomes_project 10 8310485 8310623 - Gm25979 snoRNA snoRNA MGP_AJ_T0027252.1 MGP_AJ_G0017768.1 mouse_genomes_project 10 121558354 122043731 + MGP_AJ_P0027252 Fam19a2 protein_coding protein_coding MGP_AJ_T0003020.1 MGP_AJ_G0002824.1 mouse_genomes_project 10 37055245 37057237 - Gm16364 antisense antisense MGP_AJ_T0026049.1 MGP_AJ_G0017436.1 mouse_genomes_project 10 77512170 77520600 - MGP_AJ_P0026049 Rnf126 protein_coding protein_coding MGP_AJ_T0027553.1 MGP_AJ_G0017879.1 mouse_genomes_project 10 127844406 127845431 + MGP_AJ_P0027553 Olfr780 protein_coding protein_coding MGP_AJ_T0011288.1 MGP_AJ_G0009410.1 mouse_genomes_project 10 113429883 113430189 - Gm22794 misc_RNA misc_RNA MGP_AJ_T0025997.1 MGP_AJ_G0017419.1 mouse_genomes_project 10 76898893 76980170 + MGP_AJ_P0025997 protein_coding protein_coding MGP_AJ_T0024644.1 MGP_AJ_G0017015.1 mouse_genomes_project 10 15282398 15296163 - MGP_AJ_P0024644 Ccdc28a protein_coding protein_coding MGP_AJ_T0024645.1 MGP_AJ_G0017015.1 mouse_genomes_project 10 15282491 15285044 - Ccdc28a protein_coding retained_intron MGP_AJ_T0024646.1 MGP_AJ_G0017015.1 mouse_genomes_project 10 15282774 15288258 - MGP_AJ_P0024646 Ccdc28a protein_coding protein_coding MGP_AJ_T0024647.1 MGP_AJ_G0017015.1 mouse_genomes_project 10 15282840 15302286 - MGP_AJ_P0024647 Ccdc28a protein_coding protein_coding MGP_AJ_T0024648.1 MGP_AJ_G0017015.1 mouse_genomes_project 10 15285492 15302277 - MGP_AJ_P0024648 Ccdc28a protein_coding protein_coding MGP_AJ_T0027600.1 MGP_AJ_G0017913.1 mouse_genomes_project 10 128593091 128594033 + MGP_AJ_P0027600 Olfr822 protein_coding protein_coding MGP_AJ_T0026951.1 MGP_AJ_G0017667.1 mouse_genomes_project 10 97910522 97912476 - MGP_AJ_P0026951 Csl protein_coding protein_coding MGP_AJ_T0026230.1 MGP_AJ_G0017475.1 mouse_genomes_project 10 78096269 78103139 + MGP_AJ_P0026230 Reep6 protein_coding protein_coding MGP_AJ_T0026231.1 MGP_AJ_G0017475.1 mouse_genomes_project 10 78096269 78103139 + MGP_AJ_P0026231 Reep6 protein_coding protein_coding MGP_AJ_T0026232.1 MGP_AJ_G0017475.1 mouse_genomes_project 10 78096461 78103138 + MGP_AJ_P0026232 Reep6 protein_coding protein_coding MGP_AJ_T0026233.1 MGP_AJ_G0017475.1 mouse_genomes_project 10 78096514 78101130 + Reep6 protein_coding retained_intron MGP_AJ_T0026234.1 MGP_AJ_G0017475.1 mouse_genomes_project 10 78096518 78102280 + MGP_AJ_P0026234 Reep6 protein_coding protein_coding MGP_AJ_T0027225.1 MGP_AJ_G0017761.1 mouse_genomes_project 10 120033258 120046981 + MGP_AJ_P0027225 BC048403 protein_coding protein_coding MGP_AJ_T0027226.1 MGP_AJ_G0017761.1 mouse_genomes_project 10 120033259 120046994 + MGP_AJ_P0027226 BC048403 protein_coding protein_coding MGP_AJ_T0027227.1 MGP_AJ_G0017761.1 mouse_genomes_project 10 120044222 120046499 + BC048403 protein_coding processed_transcript MGP_AJ_T0003047.1 MGP_AJ_G0002845.1 mouse_genomes_project 10 73667166 73669768 + Gm16222 antisense antisense MGP_AJ_T0011281.1 MGP_AJ_G0009403.1 mouse_genomes_project 10 90236526 90236652 - Gm27582 misc_RNA misc_RNA MGP_AJ_T0003028.1 MGP_AJ_G0002828.1 mouse_genomes_project 10 39280599 39287767 + BC048559 antisense antisense MGP_AJ_T0009603.1 MGP_AJ_G0007725.1 mouse_genomes_project 10 78042442 78042511 + Mir6911 miRNA miRNA MGP_AJ_T0099279.1 MGP_AJ_G0037245.1 mouse_genomes_project 10 81098159 81098262 - Gm23122 snRNA snRNA MGP_AJ_T0012406.1 MGP_AJ_G0010501.1 mouse_genomes_project 10 31130725 31131537 - processed_pseudogene processed_pseudogene MGP_AJ_T0025494.1 MGP_AJ_G0017294.1 mouse_genomes_project 10 60943020 60960776 + Dnajc12 protein_coding retained_intron MGP_AJ_T0025495.1 MGP_AJ_G0017294.1 mouse_genomes_project 10 60943147 60960232 + MGP_AJ_P0025495 Dnajc12 protein_coding protein_coding MGP_AJ_T0012392.1 MGP_AJ_G0010487.1 mouse_genomes_project 10 17686036 17689978 + processed_pseudogene processed_pseudogene MGP_AJ_T0025220.1 MGP_AJ_G0017222.1 mouse_genomes_project 10 55690771 55705306 + MGP_AJ_P0025220 Gcc2 protein_coding nonsense_mediated_decay MGP_AJ_T0025221.1 MGP_AJ_G0017222.1 mouse_genomes_project 10 55690793 55740551 + MGP_AJ_P0025221 Gcc2 protein_coding protein_coding MGP_AJ_T0025222.1 MGP_AJ_G0017222.1 mouse_genomes_project 10 55690829 55740909 + MGP_AJ_P0025222 Gcc2 protein_coding protein_coding MGP_AJ_T0025223.1 MGP_AJ_G0017222.1 mouse_genomes_project 10 55690976 55705178 + MGP_AJ_P0025223 Gcc2 protein_coding protein_coding MGP_AJ_T0025224.1 MGP_AJ_G0017222.1 mouse_genomes_project 10 55691154 55703889 + Gcc2 protein_coding processed_transcript MGP_AJ_T0025225.1 MGP_AJ_G0017222.1 mouse_genomes_project 10 55709288 55712137 + Gcc2 protein_coding retained_intron MGP_AJ_T0025226.1 MGP_AJ_G0017222.1 mouse_genomes_project 10 55710799 55716940 + MGP_AJ_P0025226 Gcc2 protein_coding protein_coding MGP_AJ_T0025227.1 MGP_AJ_G0017222.1 mouse_genomes_project 10 55721280 55728122 + Gcc2 protein_coding retained_intron MGP_AJ_T0025228.1 MGP_AJ_G0017222.1 mouse_genomes_project 10 55733764 55740898 + Gcc2 protein_coding retained_intron MGP_AJ_T0027545.1 MGP_AJ_G0017872.1 mouse_genomes_project 10 127667461 127668415 - MGP_AJ_P0027545 Olfr771 protein_coding protein_coding MGP_AJ_T0025972.1 MGP_AJ_G0017401.1 mouse_genomes_project 10 76140365 76171515 - MGP_AJ_P0025972 Pdxk protein_coding protein_coding MGP_AJ_T0101697.1 MGP_AJ_G0039650.1 mouse_genomes_project 10 7589438 7599808 + transcribed_processed_pseudogene processed_transcript MGP_AJ_T0101698.1 MGP_AJ_G0039650.1 mouse_genomes_project 10 7596545 7597542 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0024895.1 MGP_AJ_G0017110.1 mouse_genomes_project 10 31522059 31596702 + MGP_AJ_P0024895 Trappc3l protein_coding protein_coding MGP_AJ_T0027472.1 MGP_AJ_G0017840.1 mouse_genomes_project 10 126838705 126867732 + MGP_AJ_P0027472 Rnf41 protein_coding protein_coding MGP_AJ_T0027473.1 MGP_AJ_G0017840.1 mouse_genomes_project 10 126838705 126867732 + MGP_AJ_P0027473 Rnf41 protein_coding protein_coding MGP_AJ_T0024972.1 MGP_AJ_G0017137.1 mouse_genomes_project 10 37729274 37753457 - MGP_AJ_P0024972 Rpf2 protein_coding protein_coding MGP_AJ_T0024973.1 MGP_AJ_G0017137.1 mouse_genomes_project 10 37729455 37753491 - MGP_AJ_P0024973 Rpf2 protein_coding protein_coding MGP_AJ_T0024974.1 MGP_AJ_G0017137.1 mouse_genomes_project 10 37729711 37733827 - Rpf2 protein_coding processed_transcript MGP_AJ_T0024975.1 MGP_AJ_G0017137.1 mouse_genomes_project 10 37729841 37753458 - MGP_AJ_P0024975 Rpf2 protein_coding protein_coding MGP_AJ_T0024976.1 MGP_AJ_G0017137.1 mouse_genomes_project 10 37729916 37753482 - MGP_AJ_P0024976 Rpf2 protein_coding protein_coding MGP_AJ_T0024977.1 MGP_AJ_G0017137.1 mouse_genomes_project 10 37731368 37753448 - MGP_AJ_P0024977 Rpf2 protein_coding protein_coding MGP_AJ_T0100555.1 MGP_AJ_G0038521.1 mouse_genomes_project 10 126353132 126353263 - Gm23996 snoRNA snoRNA MGP_AJ_T0006096.1 MGP_AJ_G0005102.1 mouse_genomes_project 10 58423570 58433467 - Pldi lincRNA lincRNA MGP_AJ_T0027293.1 MGP_AJ_G0017783.1 mouse_genomes_project 10 125510343 125517528 + MGP_AJ_P0027293 B4galnt1 protein_coding protein_coding MGP_AJ_T0009591.1 MGP_AJ_G0007713.1 mouse_genomes_project 10 59730423 59730484 - Mir7662 miRNA miRNA MGP_AJ_T0026168.1 MGP_AJ_G0017462.1 mouse_genomes_project 10 77900284 77904051 + Atp5d protein_coding processed_transcript MGP_AJ_T0026169.1 MGP_AJ_G0017462.1 mouse_genomes_project 10 77903107 77907464 + MGP_AJ_P0026169 Atp5d protein_coding protein_coding MGP_AJ_T0026170.1 MGP_AJ_G0017462.1 mouse_genomes_project 10 77903965 77907469 + MGP_AJ_P0026170 Atp5d protein_coding protein_coding MGP_AJ_T0026171.1 MGP_AJ_G0017462.1 mouse_genomes_project 10 77904020 77907463 + MGP_AJ_P0026171 Atp5d protein_coding protein_coding MGP_AJ_T0027034.1 MGP_AJ_G0017693.1 mouse_genomes_project 10 108820285 108822984 + E2f7 protein_coding processed_transcript MGP_AJ_T0027035.1 MGP_AJ_G0017693.1 mouse_genomes_project 10 108820311 108831302 + MGP_AJ_P0027035 E2f7 protein_coding protein_coding MGP_AJ_T0027036.1 MGP_AJ_G0017693.1 mouse_genomes_project 10 108820314 108842790 + E2f7 protein_coding retained_intron MGP_AJ_T0027037.1 MGP_AJ_G0017693.1 mouse_genomes_project 10 108820314 108862723 + MGP_AJ_P0027037 E2f7 protein_coding protein_coding MGP_AJ_T0027038.1 MGP_AJ_G0017693.1 mouse_genomes_project 10 108820359 108860849 + MGP_AJ_P0027038 E2f7 protein_coding protein_coding MGP_AJ_T0027039.1 MGP_AJ_G0017693.1 mouse_genomes_project 10 108820418 108829242 + MGP_AJ_P0027039 E2f7 protein_coding protein_coding MGP_AJ_T0027040.1 MGP_AJ_G0017693.1 mouse_genomes_project 10 108828926 108830912 + E2f7 protein_coding processed_transcript MGP_AJ_T0027041.1 MGP_AJ_G0017693.1 mouse_genomes_project 10 108828996 108849298 + MGP_AJ_P0027041 E2f7 protein_coding nonsense_mediated_decay MGP_AJ_T0027042.1 MGP_AJ_G0017693.1 mouse_genomes_project 10 108838506 108840405 + E2f7 protein_coding retained_intron MGP_AJ_T0027457.1 MGP_AJ_G0017836.1 mouse_genomes_project 10 126789258 126796165 - MGP_AJ_P0027457 Coq10a protein_coding protein_coding MGP_AJ_T0099268.1 MGP_AJ_G0037234.1 mouse_genomes_project 10 54869248 54869348 + Gm24285 snRNA snRNA MGP_AJ_T0026403.1 MGP_AJ_G0017525.1 mouse_genomes_project 10 79071776 79076851 + MGP_AJ_P0026403 Apba3 protein_coding protein_coding MGP_AJ_T0027578.1 MGP_AJ_G0017897.1 mouse_genomes_project 10 128238868 128240347 - MGP_AJ_P0027578 Olfr805 protein_coding protein_coding MGP_AJ_T0027579.1 MGP_AJ_G0017897.1 mouse_genomes_project 10 128239956 128243728 - MGP_AJ_P0027579 Olfr805 protein_coding protein_coding MGP_AJ_T0027186.1 MGP_AJ_G0017746.1 mouse_genomes_project 10 118344383 118374262 - MGP_AJ_P0027186 Helb protein_coding protein_coding MGP_AJ_T0027187.1 MGP_AJ_G0017746.1 mouse_genomes_project 10 118345483 118352970 - Helb protein_coding retained_intron MGP_AJ_T0027188.1 MGP_AJ_G0017746.1 mouse_genomes_project 10 118345545 118374140 - MGP_AJ_P0027188 Helb protein_coding nonsense_mediated_decay MGP_AJ_T0026986.1 MGP_AJ_G0017676.1 mouse_genomes_project 10 101185572 101206955 - MGP_AJ_P0026986 Alx1 protein_coding protein_coding MGP_AJ_T0026987.1 MGP_AJ_G0017676.1 mouse_genomes_project 10 101185573 101206683 - MGP_AJ_P0026987 Alx1 protein_coding protein_coding MGP_AJ_T0026988.1 MGP_AJ_G0017676.1 mouse_genomes_project 10 101185877 101200527 - Alx1 protein_coding processed_transcript MGP_AJ_T0025139.1 MGP_AJ_G0017188.1 mouse_genomes_project 10 48189246 48453333 + MGP_AJ_P0025139 Ascc3 protein_coding protein_coding MGP_AJ_T0099260.1 MGP_AJ_G0037226.1 mouse_genomes_project 10 42893998 42894061 + Gm27723 snRNA snRNA MGP_AJ_T0027479.1 MGP_AJ_G0017843.1 mouse_genomes_project 10 126925759 126931806 - MGP_AJ_P0027479 Myl6b protein_coding protein_coding MGP_AJ_T0026282.1 MGP_AJ_G0017486.1 mouse_genomes_project 10 78372925 78379619 - MGP_AJ_P0026282 Abhd17a protein_coding protein_coding MGP_AJ_T0026283.1 MGP_AJ_G0017486.1 mouse_genomes_project 10 78372926 78379602 - MGP_AJ_P0026283 Abhd17a protein_coding protein_coding MGP_AJ_T0026284.1 MGP_AJ_G0017486.1 mouse_genomes_project 10 78372927 78375896 - MGP_AJ_P0026284 Abhd17a protein_coding protein_coding MGP_AJ_T0026285.1 MGP_AJ_G0017486.1 mouse_genomes_project 10 78375950 78379593 - MGP_AJ_P0026285 Abhd17a protein_coding protein_coding MGP_AJ_T0012405.1 MGP_AJ_G0010500.1 mouse_genomes_project 10 31103698 31103875 + processed_pseudogene processed_pseudogene MGP_AJ_T0003030.1 MGP_AJ_G0002830.1 mouse_genomes_project 10 40730726 40732142 + Gm29245 antisense antisense MGP_AJ_T0006097.1 MGP_AJ_G0005103.1 mouse_genomes_project 10 58541135 58547913 + Gm20611 lincRNA lincRNA MGP_AJ_T0006117.1 MGP_AJ_G0005117.1 mouse_genomes_project 10 78471906 78477245 + Gm26541 lincRNA lincRNA MGP_AJ_T0025106.1 MGP_AJ_G0017176.1 mouse_genomes_project 10 41502628 41549081 + MGP_AJ_P0025106 Rtn4ip1 protein_coding protein_coding MGP_AJ_T0025107.1 MGP_AJ_G0017176.1 mouse_genomes_project 10 41503210 41549090 + MGP_AJ_P0025107 Rtn4ip1 protein_coding protein_coding MGP_AJ_T0027549.1 MGP_AJ_G0017876.1 mouse_genomes_project 10 127780456 127781334 + MGP_AJ_P0027549 Olfr775 protein_coding protein_coding MGP_AJ_T0025764.1 MGP_AJ_G0017342.1 mouse_genomes_project 10 73362932 73377593 - MGP_AJ_P0025764 Gstt1 protein_coding protein_coding MGP_AJ_T0025765.1 MGP_AJ_G0017342.1 mouse_genomes_project 10 73363103 73376604 - MGP_AJ_P0025765 Gstt1 protein_coding protein_coding MGP_AJ_T0025766.1 MGP_AJ_G0017342.1 mouse_genomes_project 10 73365914 73376740 - MGP_AJ_P0025766 Gstt1 protein_coding protein_coding MGP_AJ_T0026656.1 MGP_AJ_G0017589.1 mouse_genomes_project 10 84346735 84395957 + MGP_AJ_P0026656 Timp3 protein_coding protein_coding MGP_AJ_T0026657.1 MGP_AJ_G0017589.1 mouse_genomes_project 10 84346917 84353108 + Timp3 protein_coding processed_transcript MGP_AJ_T0026658.1 MGP_AJ_G0017589.1 mouse_genomes_project 10 84346919 84373243 + Timp3 protein_coding processed_transcript MGP_AJ_T0026659.1 MGP_AJ_G0017589.1 mouse_genomes_project 10 84349212 84390443 + MGP_AJ_P0026659 Timp3 protein_coding protein_coding MGP_AJ_T0024788.1 MGP_AJ_G0017071.1 mouse_genomes_project 10 22098760 22162951 - MGP_AJ_P0024788 Enpp3 protein_coding protein_coding MGP_AJ_T0012448.1 MGP_AJ_G0010543.1 mouse_genomes_project 10 119217165 119217952 + processed_pseudogene processed_pseudogene MGP_AJ_T0025152.1 MGP_AJ_G0017195.1 mouse_genomes_project 10 49396768 49397790 - MGP_AJ_P0025152 4933411G06Rik protein_coding protein_coding MGP_AJ_T0099246.1 MGP_AJ_G0037212.1 mouse_genomes_project 10 9785588 9785688 - Gm23044 snRNA snRNA MGP_AJ_T0027588.1 MGP_AJ_G0017904.1 mouse_genomes_project 10 128361022 128365000 - MGP_AJ_P0027588 Olfr812 protein_coding protein_coding MGP_AJ_T0027589.1 MGP_AJ_G0017904.1 mouse_genomes_project 10 128361022 128362065 - MGP_AJ_P0027589 Olfr812 protein_coding protein_coding MGP_AJ_T0012414.1 MGP_AJ_G0010509.1 mouse_genomes_project 10 42644205 42645187 + processed_pseudogene processed_pseudogene MGP_AJ_T0006070.1 MGP_AJ_G0005081.1 mouse_genomes_project 10 6479236 6483611 - Gm28904 lincRNA lincRNA MGP_AJ_T0026452.1 MGP_AJ_G0017536.1 mouse_genomes_project 10 79197671 79199475 + MGP_AJ_P0026452 Smim24 protein_coding protein_coding MGP_AJ_T0026453.1 MGP_AJ_G0017536.1 mouse_genomes_project 10 79198232 79199720 + Smim24 protein_coding processed_transcript MGP_AJ_T0099267.1 MGP_AJ_G0037233.1 mouse_genomes_project 10 52347603 52347665 - Gm25602 snRNA snRNA MGP_AJ_T0003018.1 MGP_AJ_G0002822.1 mouse_genomes_project 10 24722997 24730362 + 4930579H20Rik antisense antisense MGP_AJ_T0025645.1 MGP_AJ_G0017323.1 mouse_genomes_project 10 70258083 70278189 + MGP_AJ_P0025645 Zwint protein_coding protein_coding MGP_AJ_T0025646.1 MGP_AJ_G0017323.1 mouse_genomes_project 10 70258133 70273026 + MGP_AJ_P0025646 Zwint protein_coding protein_coding MGP_AJ_T0025647.1 MGP_AJ_G0017323.1 mouse_genomes_project 10 70258134 70272402 + MGP_AJ_P0025647 Zwint protein_coding protein_coding MGP_AJ_T0025648.1 MGP_AJ_G0017323.1 mouse_genomes_project 10 70258681 70259837 + Zwint protein_coding retained_intron MGP_AJ_T0025649.1 MGP_AJ_G0017323.1 mouse_genomes_project 10 70259475 70260627 + Zwint protein_coding retained_intron MGP_AJ_T0025650.1 MGP_AJ_G0017323.1 mouse_genomes_project 10 70259829 70277549 + Zwint protein_coding processed_transcript MGP_AJ_T0024635.1 MGP_AJ_G0017013.1 mouse_genomes_project 10 15115979 15188058 + MGP_AJ_P0024635 Reps1 protein_coding protein_coding MGP_AJ_T0024636.1 MGP_AJ_G0017013.1 mouse_genomes_project 10 15116024 15188072 + MGP_AJ_P0024636 Reps1 protein_coding nonsense_mediated_decay MGP_AJ_T0024637.1 MGP_AJ_G0017013.1 mouse_genomes_project 10 15116058 15188083 + MGP_AJ_P0024637 Reps1 protein_coding protein_coding MGP_AJ_T0024638.1 MGP_AJ_G0017013.1 mouse_genomes_project 10 15116081 15188070 + MGP_AJ_P0024638 Reps1 protein_coding protein_coding MGP_AJ_T0024639.1 MGP_AJ_G0017013.1 mouse_genomes_project 10 15154377 15167903 + Reps1 protein_coding retained_intron MGP_AJ_T0024640.1 MGP_AJ_G0017013.1 mouse_genomes_project 10 15156080 15167064 + MGP_AJ_P0024640 Reps1 protein_coding protein_coding MGP_AJ_T0024641.1 MGP_AJ_G0017013.1 mouse_genomes_project 10 15157440 15180610 + MGP_AJ_P0024641 Reps1 protein_coding protein_coding MGP_AJ_T0024642.1 MGP_AJ_G0017013.1 mouse_genomes_project 10 15185137 15186063 + Reps1 protein_coding retained_intron MGP_AJ_T0026668.1 MGP_AJ_G0017592.1 mouse_genomes_project 10 84787878 84858723 + MGP_AJ_P0026668 Ttc41 protein_coding protein_coding MGP_AJ_T0026669.1 MGP_AJ_G0017592.1 mouse_genomes_project 10 84787878 84806285 + MGP_AJ_P0026669 Ttc41 protein_coding protein_coding MGP_AJ_T0102223.1 MGP_AJ_G0039966.1 mouse_genomes_project 10 128455870 128457038 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0009620.1 MGP_AJ_G0007742.1 mouse_genomes_project 10 92696462 92696525 - Mir7211 miRNA miRNA MGP_AJ_T0098374.1 MGP_AJ_G0036358.1 mouse_genomes_project 10 15070908 15071145 + pseudogene pseudogene MGP_AJ_T0006090.1 MGP_AJ_G0005096.1 mouse_genomes_project 10 37362732 37364206 - Gm26824 lincRNA lincRNA MGP_AJ_T0027294.1 MGP_AJ_G0017784.1 mouse_genomes_project 10 125517613 125525824 - MGP_AJ_P0027294 Slc26a10 protein_coding protein_coding MGP_AJ_T0026119.1 MGP_AJ_G0017454.1 mouse_genomes_project 10 77744732 77752059 + MGP_AJ_P0026119 Cnn2 protein_coding protein_coding MGP_AJ_T0026120.1 MGP_AJ_G0017454.1 mouse_genomes_project 10 77744771 77750681 + MGP_AJ_P0026120 Cnn2 protein_coding protein_coding MGP_AJ_T0024661.1 MGP_AJ_G0017021.1 mouse_genomes_project 10 16068723 16083215 - MGP_AJ_P0024661 Tnfaip3 protein_coding protein_coding MGP_AJ_T0024662.1 MGP_AJ_G0017021.1 mouse_genomes_project 10 16068726 16079776 - MGP_AJ_P0024662 Tnfaip3 protein_coding protein_coding MGP_AJ_T0024663.1 MGP_AJ_G0017021.1 mouse_genomes_project 10 16068742 16083181 - Tnfaip3 protein_coding retained_intron MGP_AJ_T0024664.1 MGP_AJ_G0017021.1 mouse_genomes_project 10 16075080 16076655 - Tnfaip3 protein_coding retained_intron MGP_AJ_T0024665.1 MGP_AJ_G0017021.1 mouse_genomes_project 10 16076075 16083462 - MGP_AJ_P0024665 Tnfaip3 protein_coding protein_coding MGP_AJ_T0024666.1 MGP_AJ_G0017021.1 mouse_genomes_project 10 16079328 16082387 - MGP_AJ_P0024666 Tnfaip3 protein_coding protein_coding MGP_AJ_T0025899.1 MGP_AJ_G0017379.1 mouse_genomes_project 10 75331367 75331700 + MGP_AJ_P0025899 Gm10272 protein_coding protein_coding MGP_AJ_T0100552.1 MGP_AJ_G0038518.1 mouse_genomes_project 10 115385283 115385360 - Gm26311 snoRNA snoRNA MGP_AJ_T0003090.1 MGP_AJ_G0002877.1 mouse_genomes_project 10 114665106 114666926 + Kcnmb4os2 antisense antisense MGP_AJ_T0003091.1 MGP_AJ_G0002877.1 mouse_genomes_project 10 114665971 114667263 + Kcnmb4os2 antisense antisense MGP_AJ_T0003092.1 MGP_AJ_G0002877.1 mouse_genomes_project 10 114666288 114666931 + Kcnmb4os2 antisense antisense MGP_AJ_T0101704.1 MGP_AJ_G0039654.1 mouse_genomes_project 10 115798185 115799715 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0101705.1 MGP_AJ_G0039654.1 mouse_genomes_project 10 115798558 115799121 + transcribed_processed_pseudogene processed_transcript MGP_AJ_T0009640.1 MGP_AJ_G0007762.1 mouse_genomes_project 10 126488783 126488861 + Mir677 miRNA miRNA MGP_AJ_T0026075.1 MGP_AJ_G0017442.1 mouse_genomes_project 10 77614982 77629764 - MGP_AJ_P0026075 Plppr3 protein_coding protein_coding MGP_AJ_T0026077.1 MGP_AJ_G0017442.1 mouse_genomes_project 10 77619166 77629560 - Plppr3 protein_coding retained_intron MGP_AJ_T0026078.1 MGP_AJ_G0017442.1 mouse_genomes_project 10 77619166 77629764 - Plppr3 protein_coding retained_intron MGP_AJ_T0026079.1 MGP_AJ_G0017442.1 mouse_genomes_project 10 77619166 77629828 - MGP_AJ_P0026079 Plppr3 protein_coding protein_coding MGP_AJ_T0026080.1 MGP_AJ_G0017442.1 mouse_genomes_project 10 77620797 77621667 - Plppr3 protein_coding retained_intron MGP_AJ_T0026081.1 MGP_AJ_G0017442.1 mouse_genomes_project 10 77620817 77629418 - MGP_AJ_P0026081 Plppr3 protein_coding protein_coding MGP_AJ_T0026082.1 MGP_AJ_G0017442.1 mouse_genomes_project 10 77620823 77629602 - MGP_AJ_P0026082 Plppr3 protein_coding protein_coding MGP_AJ_T0026083.1 MGP_AJ_G0017442.1 mouse_genomes_project 10 77621239 77629583 - Plppr3 protein_coding processed_transcript MGP_AJ_T0026084.1 MGP_AJ_G0017442.1 mouse_genomes_project 10 77621293 77629593 - MGP_AJ_P0026084 Plppr3 protein_coding protein_coding MGP_AJ_T0026085.1 MGP_AJ_G0017442.1 mouse_genomes_project 10 77621844 77629564 - MGP_AJ_P0026085 Plppr3 protein_coding protein_coding MGP_AJ_T0100532.1 MGP_AJ_G0038498.1 mouse_genomes_project 10 69438817 69438948 + Gm22937 snoRNA snoRNA MGP_AJ_T0006125.1 MGP_AJ_G0005124.1 mouse_genomes_project 10 86439181 86443649 - Gm26546 lincRNA lincRNA MGP_AJ_T0025419.1 MGP_AJ_G0017275.1 mouse_genomes_project 10 59965549 59986079 - MGP_AJ_P0025419 Supv3l1 protein_coding protein_coding MGP_AJ_T0025420.1 MGP_AJ_G0017275.1 mouse_genomes_project 10 59965595 59986024 - MGP_AJ_P0025420 Supv3l1 protein_coding nonsense_mediated_decay MGP_AJ_T0025421.1 MGP_AJ_G0017275.1 mouse_genomes_project 10 59965680 59966962 - Supv3l1 protein_coding retained_intron MGP_AJ_T0025422.1 MGP_AJ_G0017275.1 mouse_genomes_project 10 59965783 59967309 - Supv3l1 protein_coding retained_intron MGP_AJ_T0025423.1 MGP_AJ_G0017275.1 mouse_genomes_project 10 59968699 59969468 - Supv3l1 protein_coding processed_transcript MGP_AJ_T0027090.1 MGP_AJ_G0017716.1 mouse_genomes_project 10 113745267 113756990 + MGP_AJ_P0027090 A930009A15Rik protein_coding protein_coding MGP_AJ_T0024649.1 MGP_AJ_G0017016.1 mouse_genomes_project 10 15451575 15586659 + MGP_AJ_P0024649 Nhsl1 protein_coding nonsense_mediated_decay MGP_AJ_T0024650.1 MGP_AJ_G0017016.1 mouse_genomes_project 10 15469823 15483366 + Nhsl1 protein_coding processed_transcript MGP_AJ_T0024651.1 MGP_AJ_G0017016.1 mouse_genomes_project 10 15469860 15574805 + Nhsl1 protein_coding retained_intron MGP_AJ_T0024652.1 MGP_AJ_G0017016.1 mouse_genomes_project 10 15469860 15596259 + MGP_AJ_P0024652 Nhsl1 protein_coding protein_coding MGP_AJ_T0024653.1 MGP_AJ_G0017016.1 mouse_genomes_project 10 15531980 15535494 + Nhsl1 protein_coding retained_intron MGP_AJ_T0024654.1 MGP_AJ_G0017016.1 mouse_genomes_project 10 15532060 15560381 + Nhsl1 protein_coding processed_transcript MGP_AJ_T0024655.1 MGP_AJ_G0017016.1 mouse_genomes_project 10 15532073 15588329 + MGP_AJ_P0024655 Nhsl1 protein_coding protein_coding MGP_AJ_T0024656.1 MGP_AJ_G0017016.1 mouse_genomes_project 10 15532073 15596256 + MGP_AJ_P0024656 Nhsl1 protein_coding protein_coding MGP_AJ_T0026606.1 MGP_AJ_G0017572.1 mouse_genomes_project 10 82549781 82588580 + MGP_AJ_P0026606 Tcp11l2 protein_coding protein_coding MGP_AJ_T0026607.1 MGP_AJ_G0017572.1 mouse_genomes_project 10 82550052 82569138 + Tcp11l2 protein_coding retained_intron MGP_AJ_T0026608.1 MGP_AJ_G0017572.1 mouse_genomes_project 10 82568492 82579295 + Tcp11l2 protein_coding retained_intron MGP_AJ_T0027596.1 MGP_AJ_G0017910.1 mouse_genomes_project 10 128494983 128497783 - MGP_AJ_P0027596 protein_coding protein_coding MGP_AJ_T0025728.1 MGP_AJ_G0017334.1 mouse_genomes_project 10 73127506 73137687 - MGP_AJ_P0025728 Lrrc75b protein_coding protein_coding MGP_AJ_T0100548.1 MGP_AJ_G0038514.1 mouse_genomes_project 10 108872045 108872173 + Gm23698 snoRNA snoRNA MGP_AJ_T0098379.1 MGP_AJ_G0036363.1 mouse_genomes_project 10 67826868 67829492 - pseudogene pseudogene MGP_AJ_T0003103.1 MGP_AJ_G0002885.1 mouse_genomes_project 10 125964369 125965682 + Gm16217 antisense antisense MGP_AJ_T0026353.1 MGP_AJ_G0017513.1 mouse_genomes_project 10 78880145 78894561 - MGP_AJ_P0026353 Creb3l3 protein_coding protein_coding MGP_AJ_T0026354.1 MGP_AJ_G0017513.1 mouse_genomes_project 10 78885707 78888340 - Creb3l3 protein_coding retained_intron MGP_AJ_T0026355.1 MGP_AJ_G0017513.1 mouse_genomes_project 10 78886387 78887671 - Creb3l3 protein_coding retained_intron MGP_AJ_T0026356.1 MGP_AJ_G0017513.1 mouse_genomes_project 10 78888395 78894441 - Creb3l3 protein_coding processed_transcript MGP_AJ_T0027383.1 MGP_AJ_G0017809.1 mouse_genomes_project 10 126120507 126124960 - MGP_AJ_P0027383 Gpr182 protein_coding protein_coding MGP_AJ_T0026316.1 MGP_AJ_G0017498.1 mouse_genomes_project 10 78596893 78599294 + MGP_AJ_P0026316 Amh protein_coding protein_coding MGP_AJ_T0024393.1 MGP_AJ_G0016958.1 mouse_genomes_project 10 1403385 1492481 + MGP_AJ_P0024393 Ccdc170 protein_coding protein_coding MGP_AJ_T0024394.1 MGP_AJ_G0016958.1 mouse_genomes_project 10 1437430 1492481 + MGP_AJ_P0024394 Ccdc170 protein_coding protein_coding MGP_AJ_T0024395.1 MGP_AJ_G0016958.1 mouse_genomes_project 10 1439091 1441902 + MGP_AJ_P0024395 Ccdc170 protein_coding protein_coding MGP_AJ_T0024396.1 MGP_AJ_G0016958.1 mouse_genomes_project 10 1463482 1472424 + Ccdc170 protein_coding processed_transcript MGP_AJ_T0027598.1 MGP_AJ_G0017912.1 mouse_genomes_project 10 128560929 128565104 + MGP_AJ_P0027598 Olfr821 protein_coding protein_coding MGP_AJ_T0027599.1 MGP_AJ_G0017912.1 mouse_genomes_project 10 128564171 128565104 + MGP_AJ_P0027599 Olfr821 protein_coding protein_coding MGP_AJ_T0025088.1 MGP_AJ_G0017168.1 mouse_genomes_project 10 40751394 40753298 + MGP_AJ_P0025088 9030612E09Rik protein_coding protein_coding MGP_AJ_T0026048.1 MGP_AJ_G0017435.1 mouse_genomes_project 10 77508774 77510617 + MGP_AJ_P0026048 Fgf22 protein_coding protein_coding MGP_AJ_T0025245.1 MGP_AJ_G0017230.1 mouse_genomes_project 10 56611960 56669163 - MGP_AJ_P0025245 Sept10 protein_coding protein_coding MGP_AJ_T0026281.1 MGP_AJ_G0017485.1 mouse_genomes_project 10 78356438 78366628 - MGP_AJ_P0026281 Klf16 protein_coding protein_coding MGP_AJ_T0026357.1 MGP_AJ_G0017514.1 mouse_genomes_project 10 78901498 78921387 + MGP_AJ_P0026357 Map2k2 protein_coding protein_coding MGP_AJ_T0026358.1 MGP_AJ_G0017514.1 mouse_genomes_project 10 78901530 78920573 + MGP_AJ_P0026358 Map2k2 protein_coding protein_coding MGP_AJ_T0026359.1 MGP_AJ_G0017514.1 mouse_genomes_project 10 78901555 78920535 + MGP_AJ_P0026359 Map2k2 protein_coding nonsense_mediated_decay MGP_AJ_T0026360.1 MGP_AJ_G0017514.1 mouse_genomes_project 10 78901928 78915815 + MGP_AJ_P0026360 Map2k2 protein_coding protein_coding MGP_AJ_T0026361.1 MGP_AJ_G0017514.1 mouse_genomes_project 10 78915301 78916017 + Map2k2 protein_coding retained_intron MGP_AJ_T0026362.1 MGP_AJ_G0017514.1 mouse_genomes_project 10 78917543 78919252 + Map2k2 protein_coding retained_intron MGP_AJ_T0026363.1 MGP_AJ_G0017514.1 mouse_genomes_project 10 78918849 78920617 + Map2k2 protein_coding retained_intron MGP_AJ_T0003010.1 MGP_AJ_G0002815.1 mouse_genomes_project 10 11151162 11155853 - Gm28289 antisense antisense MGP_AJ_T0100497.1 MGP_AJ_G0038463.1 mouse_genomes_project 10 5799016 5799153 - Gm25410 snoRNA snoRNA MGP_AJ_T0025859.1 MGP_AJ_G0017373.1 mouse_genomes_project 10 74906981 75033781 - MGP_AJ_P0025859 Adarb1 protein_coding protein_coding MGP_AJ_T0025860.1 MGP_AJ_G0017373.1 mouse_genomes_project 10 74906981 75033776 - MGP_AJ_P0025860 Adarb1 protein_coding protein_coding MGP_AJ_T0025861.1 MGP_AJ_G0017373.1 mouse_genomes_project 10 74906982 75033781 - MGP_AJ_P0025861 Adarb1 protein_coding nonsense_mediated_decay MGP_AJ_T0025862.1 MGP_AJ_G0017373.1 mouse_genomes_project 10 74906982 75033738 - MGP_AJ_P0025862 Adarb1 protein_coding nonsense_mediated_decay MGP_AJ_T0025863.1 MGP_AJ_G0017373.1 mouse_genomes_project 10 74906982 75033738 - MGP_AJ_P0025863 Adarb1 protein_coding nonsense_mediated_decay MGP_AJ_T0025864.1 MGP_AJ_G0017373.1 mouse_genomes_project 10 74906983 75033781 - MGP_AJ_P0025864 Adarb1 protein_coding protein_coding MGP_AJ_T0025865.1 MGP_AJ_G0017373.1 mouse_genomes_project 10 74933156 75033722 - Adarb1 protein_coding retained_intron MGP_AJ_T0025866.1 MGP_AJ_G0017373.1 mouse_genomes_project 10 74933170 75033776 - Adarb1 protein_coding retained_intron MGP_AJ_T0025867.1 MGP_AJ_G0017373.1 mouse_genomes_project 10 74939837 75033749 - Adarb1 protein_coding retained_intron MGP_AJ_T0025868.1 MGP_AJ_G0017373.1 mouse_genomes_project 10 74942384 75033365 - Adarb1 protein_coding retained_intron MGP_AJ_T0025869.1 MGP_AJ_G0017373.1 mouse_genomes_project 10 74942575 75033728 - Adarb1 protein_coding retained_intron MGP_AJ_T0025870.1 MGP_AJ_G0017373.1 mouse_genomes_project 10 74942761 74957215 - Adarb1 protein_coding retained_intron MGP_AJ_T0025871.1 MGP_AJ_G0017373.1 mouse_genomes_project 10 74942836 74984963 - Adarb1 protein_coding retained_intron MGP_AJ_T0100541.1 MGP_AJ_G0038507.1 mouse_genomes_project 10 95917364 95917492 - Gm25658 snoRNA snoRNA MGP_AJ_T0012419.1 MGP_AJ_G0010514.1 mouse_genomes_project 10 55492171 55492619 + processed_pseudogene processed_pseudogene MGP_AJ_T0024740.1 MGP_AJ_G0017044.1 mouse_genomes_project 10 19508242 19530928 + MGP_AJ_P0024740 protein_coding protein_coding MGP_AJ_T0024742.1 MGP_AJ_G0017044.1 mouse_genomes_project 10 19516964 19535968 + MGP_AJ_P0024742 protein_coding protein_coding MGP_AJ_T0024744.1 MGP_AJ_G0017044.1 mouse_genomes_project 10 19519077 19535965 + MGP_AJ_P0024744 protein_coding protein_coding MGP_AJ_T0027253.1 MGP_AJ_G0017769.1 mouse_genomes_project 10 123563676 123663343 - MGP_AJ_P0027253 Slc16a7 protein_coding protein_coding MGP_AJ_T0027254.1 MGP_AJ_G0017769.1 mouse_genomes_project 10 123564706 123643203 - MGP_AJ_P0027254 Slc16a7 protein_coding protein_coding MGP_AJ_T0025171.1 MGP_AJ_G0017203.1 mouse_genomes_project 10 50319522 50741775 + MGP_AJ_P0025171 Slc35f1 protein_coding protein_coding MGP_AJ_T0099265.1 MGP_AJ_G0037231.1 mouse_genomes_project 10 50535428 50535535 + Gm25664 snRNA snRNA MGP_AJ_T0025873.1 MGP_AJ_G0017375.1 mouse_genomes_project 10 75150530 75185878 + MGP_AJ_P0025873 Itgb2 protein_coding protein_coding MGP_AJ_T0025874.1 MGP_AJ_G0017375.1 mouse_genomes_project 10 75150625 75167386 + MGP_AJ_P0025874 Itgb2 protein_coding protein_coding MGP_AJ_T0025875.1 MGP_AJ_G0017375.1 mouse_genomes_project 10 75150648 75168863 + MGP_AJ_P0025875 Itgb2 protein_coding protein_coding MGP_AJ_T0025876.1 MGP_AJ_G0017375.1 mouse_genomes_project 10 75150652 75185814 + MGP_AJ_P0025876 Itgb2 protein_coding nonsense_mediated_decay MGP_AJ_T0025877.1 MGP_AJ_G0017375.1 mouse_genomes_project 10 75150658 75185900 + MGP_AJ_P0025877 Itgb2 protein_coding nonsense_mediated_decay MGP_AJ_T0100514.1 MGP_AJ_G0038480.1 mouse_genomes_project 10 34278647 34278794 - Gm22554 snoRNA snoRNA MGP_AJ_T0102221.1 MGP_AJ_G0039964.1 mouse_genomes_project 10 128088407 128089170 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0025192.1 MGP_AJ_G0017211.1 mouse_genomes_project 10 53785420 53795260 + MGP_AJ_P0025192 Msl3l2 protein_coding protein_coding MGP_AJ_T0025772.1 MGP_AJ_G0017347.1 mouse_genomes_project 10 73480750 73505150 - MGP_AJ_P0025772 Smarcb1 protein_coding protein_coding MGP_AJ_T0025773.1 MGP_AJ_G0017347.1 mouse_genomes_project 10 73480754 73497717 - Smarcb1 protein_coding retained_intron MGP_AJ_T0025774.1 MGP_AJ_G0017347.1 mouse_genomes_project 10 73480756 73500107 - Smarcb1 protein_coding retained_intron MGP_AJ_T0025775.1 MGP_AJ_G0017347.1 mouse_genomes_project 10 73480758 73505147 - MGP_AJ_P0025775 Smarcb1 protein_coding protein_coding MGP_AJ_T0025776.1 MGP_AJ_G0017347.1 mouse_genomes_project 10 73481509 73505122 - MGP_AJ_P0025776 Smarcb1 protein_coding nonsense_mediated_decay MGP_AJ_T0025777.1 MGP_AJ_G0017347.1 mouse_genomes_project 10 73493822 73498699 - MGP_AJ_P0025777 Smarcb1 protein_coding nonsense_mediated_decay MGP_AJ_T0003055.1 MGP_AJ_G0002852.1 mouse_genomes_project 10 78140085 78141347 + Gm15124 antisense antisense MGP_AJ_T0026474.1 MGP_AJ_G0017540.1 mouse_genomes_project 10 79303205 79305593 - MGP_AJ_P0026474 S1pr4 protein_coding protein_coding MGP_AJ_T0025380.1 MGP_AJ_G0017268.1 mouse_genomes_project 10 59603942 59605537 + MGP_AJ_P0025380 Gm5424 protein_coding protein_coding MGP_AJ_T0027566.1 MGP_AJ_G0017889.1 mouse_genomes_project 10 128115355 128116288 - MGP_AJ_P0027566 Olfr796 protein_coding protein_coding MGP_AJ_T0027567.1 MGP_AJ_G0017889.1 mouse_genomes_project 10 128115355 128119904 - MGP_AJ_P0027567 Olfr796 protein_coding protein_coding MGP_AJ_T0025328.1 MGP_AJ_G0017250.1 mouse_genomes_project 10 58253245 58324945 - MGP_AJ_P0025328 Unc5b protein_coding protein_coding MGP_AJ_T0026867.1 MGP_AJ_G0017637.1 mouse_genomes_project 10 91971083 92003216 - MGP_AJ_P0026867 Metap2 protein_coding protein_coding MGP_AJ_T0026868.1 MGP_AJ_G0017637.1 mouse_genomes_project 10 91972421 91976606 - Metap2 protein_coding retained_intron MGP_AJ_T0026869.1 MGP_AJ_G0017637.1 mouse_genomes_project 10 91973521 92004608 - MGP_AJ_P0026869 Metap2 protein_coding protein_coding MGP_AJ_T0026870.1 MGP_AJ_G0017637.1 mouse_genomes_project 10 91973522 92003186 - MGP_AJ_P0026870 Metap2 protein_coding protein_coding MGP_AJ_T0026871.1 MGP_AJ_G0017637.1 mouse_genomes_project 10 91973522 92003177 - MGP_AJ_P0026871 Metap2 protein_coding protein_coding MGP_AJ_T0026872.1 MGP_AJ_G0017637.1 mouse_genomes_project 10 91974174 91984191 - MGP_AJ_P0026872 Metap2 protein_coding nonsense_mediated_decay MGP_AJ_T0026873.1 MGP_AJ_G0017637.1 mouse_genomes_project 10 91974812 91976541 - Metap2 protein_coding retained_intron MGP_AJ_T0026874.1 MGP_AJ_G0017637.1 mouse_genomes_project 10 91974812 91978068 - MGP_AJ_P0026874 Metap2 protein_coding protein_coding MGP_AJ_T0026875.1 MGP_AJ_G0017637.1 mouse_genomes_project 10 91981374 91984049 - Metap2 protein_coding retained_intron MGP_AJ_T0026876.1 MGP_AJ_G0017637.1 mouse_genomes_project 10 91981471 92003018 - MGP_AJ_P0026876 Metap2 protein_coding protein_coding MGP_AJ_T0026877.1 MGP_AJ_G0017637.1 mouse_genomes_project 10 91982728 92003216 - MGP_AJ_P0026877 Metap2 protein_coding protein_coding MGP_AJ_T0026878.1 MGP_AJ_G0017637.1 mouse_genomes_project 10 91992851 92003130 - Metap2 protein_coding retained_intron MGP_AJ_T0026879.1 MGP_AJ_G0017637.1 mouse_genomes_project 10 91992930 92003163 - Metap2 protein_coding retained_intron MGP_AJ_T0026880.1 MGP_AJ_G0017637.1 mouse_genomes_project 10 92003092 92003700 - Metap2 protein_coding processed_transcript MGP_AJ_T0026881.1 MGP_AJ_G0017637.1 mouse_genomes_project 10 92003329 92004535 - Metap2 protein_coding processed_transcript MGP_AJ_T0026882.1 MGP_AJ_G0017637.1 mouse_genomes_project 10 92003446 92010321 - Metap2 protein_coding processed_transcript MGP_AJ_T0009608.1 MGP_AJ_G0007730.1 mouse_genomes_project 10 79075201 79075292 + Mir3057 miRNA miRNA MGP_AJ_T0025979.1 MGP_AJ_G0017406.1 mouse_genomes_project 10 76417856 76424113 - MGP_AJ_P0025979 Casp14 protein_coding protein_coding MGP_AJ_T0101937.1 MGP_AJ_G0039787.1 mouse_genomes_project 10 126204384 126241043 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_AJ_T0101938.1 MGP_AJ_G0039787.1 mouse_genomes_project 10 126204384 126241048 + transcribed_unprocessed_pseudogene processed_transcript MGP_AJ_T0006111.1 MGP_AJ_G0005113.1 mouse_genomes_project 10 70792800 70914554 - Gm15398 lincRNA lincRNA MGP_AJ_T0025110.1 MGP_AJ_G0017178.1 mouse_genomes_project 10 41822526 41840226 + MGP_AJ_P0025110 protein_coding protein_coding MGP_AJ_T0012395.1 MGP_AJ_G0010490.1 mouse_genomes_project 10 19496209 19499509 + processed_pseudogene processed_pseudogene MGP_AJ_T0012390.1 MGP_AJ_G0010485.1 mouse_genomes_project 10 14850255 14851195 + processed_pseudogene processed_pseudogene MGP_AJ_T0026682.1 MGP_AJ_G0017597.1 mouse_genomes_project 10 85557587 85560431 - MGP_AJ_P0026682 Ascl1 protein_coding protein_coding MGP_AJ_T0009602.1 MGP_AJ_G0007724.1 mouse_genomes_project 10 77617094 77617160 + Mir6910 miRNA miRNA MGP_AJ_T0009592.1 MGP_AJ_G0007714.1 mouse_genomes_project 10 60223743 60223794 + Mir7215 miRNA miRNA MGP_AJ_T0024464.1 MGP_AJ_G0016971.1 mouse_genomes_project 10 4414625 4434250 - MGP_AJ_P0024464 Ulbp1 protein_coding protein_coding MGP_AJ_T0025980.1 MGP_AJ_G0017407.1 mouse_genomes_project 10 76452636 76463595 - MGP_AJ_P0025980 Ccdc105 protein_coding protein_coding MGP_AJ_T0100560.1 MGP_AJ_G0038526.1 mouse_genomes_project 10 128207146 128207270 + Gm24717 snoRNA snoRNA MGP_AJ_T0026580.1 MGP_AJ_G0017565.1 mouse_genomes_project 10 81304335 81313596 + MGP_AJ_P0026580 D10Wsu102e protein_coding protein_coding MGP_AJ_T0100557.1 MGP_AJ_G0038523.1 mouse_genomes_project 10 126488786 126488858 + Mir677 snoRNA snoRNA MGP_AJ_T0006154.1 MGP_AJ_G0005138.1 mouse_genomes_project 10 109678688 109686810 - 4933440J02Rik lincRNA lincRNA MGP_AJ_T0003034.1 MGP_AJ_G0002834.1 mouse_genomes_project 10 58427335 58436277 + Gm26947 antisense antisense MGP_AJ_T0026223.1 MGP_AJ_G0017473.1 mouse_genomes_project 10 78084614 78086898 - MGP_AJ_P0026223 2310011J03Rik protein_coding protein_coding MGP_AJ_T0098526.1 MGP_AJ_G0036510.1 mouse_genomes_project 10 42302816 42302927 + Gm27977 rRNA rRNA MGP_AJ_T0024626.1 MGP_AJ_G0017008.1 mouse_genomes_project 10 11732270 11734862 - MGP_AJ_P0024626 Gje1 protein_coding protein_coding MGP_AJ_T0027351.1 MGP_AJ_G0017799.1 mouse_genomes_project 10 125883297 125885510 + MGP_AJ_P0027351 Ndufa4l2 protein_coding protein_coding MGP_AJ_T0099285.1 MGP_AJ_G0037251.1 mouse_genomes_project 10 87912293 87912400 - Gm26180 snRNA snRNA MGP_AJ_T0024715.1 MGP_AJ_G0017037.1 mouse_genomes_project 10 18358793 18434721 + MGP_AJ_P0024715 Hbs1l protein_coding protein_coding MGP_AJ_T0024716.1 MGP_AJ_G0017037.1 mouse_genomes_project 10 18358793 18373993 + MGP_AJ_P0024716 Hbs1l protein_coding protein_coding MGP_AJ_T0024717.1 MGP_AJ_G0017037.1 mouse_genomes_project 10 18358911 18370065 + MGP_AJ_P0024717 Hbs1l protein_coding unknown_likely_coding MGP_AJ_T0027418.1 MGP_AJ_G0017823.1 mouse_genomes_project 10 126496280 126537210 + MGP_AJ_P0027418 Baz2a protein_coding protein_coding MGP_AJ_T0027419.1 MGP_AJ_G0017823.1 mouse_genomes_project 10 126496280 126537210 + MGP_AJ_P0027419 Baz2a protein_coding protein_coding MGP_AJ_T0009635.1 MGP_AJ_G0007757.1 mouse_genomes_project 10 121490386 121490482 - Gm27920 miRNA miRNA MGP_AJ_T0027506.1 MGP_AJ_G0017852.1 mouse_genomes_project 10 127124960 127146122 - MGP_AJ_P0027506 protein_coding protein_coding MGP_AJ_T0027507.1 MGP_AJ_G0017852.1 mouse_genomes_project 10 127127363 127146141 - MGP_AJ_P0027507 protein_coding unknown_likely_coding MGP_AJ_T0009615.1 MGP_AJ_G0007737.1 mouse_genomes_project 10 90174987 90175087 - Mir135a-2 miRNA miRNA MGP_AJ_T0003065.1 MGP_AJ_G0002859.1 mouse_genomes_project 10 79379697 79383026 - Gm15917 antisense antisense MGP_AJ_T0009641.1 MGP_AJ_G0007763.1 mouse_genomes_project 10 126803724 126803793 - Gm26308 miRNA miRNA MGP_AJ_T0027164.1 MGP_AJ_G0017742.1 mouse_genomes_project 10 116698302 116703151 + MGP_AJ_P0027164 Ifng protein_coding protein_coding MGP_AJ_T0006164.1 MGP_AJ_G0005144.1 mouse_genomes_project 10 117668859 117682168 + 1700025F24Rik lincRNA lincRNA MGP_AJ_T0024657.1 MGP_AJ_G0017017.1 mouse_genomes_project 10 15602675 15608598 - MGP_AJ_P0024657 Hebp2 protein_coding protein_coding MGP_AJ_T0027069.1 MGP_AJ_G0017708.1 mouse_genomes_project 10 112557197 112969572 - MGP_AJ_P0027069 Trhde protein_coding protein_coding MGP_AJ_T0027070.1 MGP_AJ_G0017708.1 mouse_genomes_project 10 112727984 112970456 - Trhde protein_coding retained_intron MGP_AJ_T0027071.1 MGP_AJ_G0017708.1 mouse_genomes_project 10 112955673 112969519 - Trhde protein_coding retained_intron MGP_AJ_T0025858.1 MGP_AJ_G0017372.1 mouse_genomes_project 10 74874550 74884837 + MGP_AJ_P0025858 Pofut2 protein_coding protein_coding MGP_AJ_T0006127.1 MGP_AJ_G0005126.1 mouse_genomes_project 10 89234966 89236046 + Gm26765 lincRNA lincRNA MGP_AJ_T0026057.1 MGP_AJ_G0017439.1 mouse_genomes_project 10 77546617 77574963 + MGP_AJ_P0026057 Palm protein_coding protein_coding MGP_AJ_T0026058.1 MGP_AJ_G0017439.1 mouse_genomes_project 10 77546617 77574963 + MGP_AJ_P0026058 Palm protein_coding protein_coding MGP_AJ_T0027128.1 MGP_AJ_G0017730.1 mouse_genomes_project 10 115417580 115426746 - MGP_AJ_P0027128 Yeats4 protein_coding protein_coding MGP_AJ_T0012428.1 MGP_AJ_G0010523.1 mouse_genomes_project 10 71263137 71263686 - processed_pseudogene processed_pseudogene MGP_AJ_T0025250.1 MGP_AJ_G0017233.1 mouse_genomes_project 10 56858719 56877016 + MGP_AJ_P0025250 Pla2g12b protein_coding protein_coding MGP_AJ_T0025251.1 MGP_AJ_G0017233.1 mouse_genomes_project 10 56866073 56877010 + MGP_AJ_P0025251 Pla2g12b protein_coding protein_coding MGP_AJ_T0025955.1 MGP_AJ_G0017394.1 mouse_genomes_project 10 75764149 75774874 + MGP_AJ_P0025955 Icosl protein_coding protein_coding MGP_AJ_T0009601.1 MGP_AJ_G0007723.1 mouse_genomes_project 10 77280880 77280942 - Mir6909 miRNA miRNA MGP_AJ_T0025755.1 MGP_AJ_G0017338.1 mouse_genomes_project 10 73224293 73343520 - MGP_AJ_P0025755 Cabin1 protein_coding protein_coding MGP_AJ_T0003015.1 MGP_AJ_G0002819.1 mouse_genomes_project 10 18208986 18218269 + Gm26577 antisense antisense MGP_AJ_T0027052.1 MGP_AJ_G0017700.1 mouse_genomes_project 10 110067932 110083445 + MGP_AJ_P0027052 Krr1 protein_coding protein_coding MGP_AJ_T0027053.1 MGP_AJ_G0017700.1 mouse_genomes_project 10 110068025 110071784 + Krr1 protein_coding retained_intron MGP_AJ_T0027054.1 MGP_AJ_G0017700.1 mouse_genomes_project 10 110068043 110081907 + Krr1 protein_coding retained_intron MGP_AJ_T0027055.1 MGP_AJ_G0017700.1 mouse_genomes_project 10 110068061 110079694 + MGP_AJ_P0027055 Krr1 protein_coding protein_coding MGP_AJ_T0098529.1 MGP_AJ_G0036513.1 mouse_genomes_project 10 86776185 86776301 - n-R5s79 rRNA rRNA MGP_AJ_T0026732.1 MGP_AJ_G0017608.1 mouse_genomes_project 10 86579899 86669325 - MGP_AJ_P0026732 Mybpc1 protein_coding protein_coding MGP_AJ_T0026733.1 MGP_AJ_G0017608.1 mouse_genomes_project 10 86579902 86584871 - Mybpc1 protein_coding retained_intron MGP_AJ_T0026734.1 MGP_AJ_G0017608.1 mouse_genomes_project 10 86579959 86669198 - MGP_AJ_P0026734 Mybpc1 protein_coding protein_coding MGP_AJ_T0026735.1 MGP_AJ_G0017608.1 mouse_genomes_project 10 86581007 86598991 - MGP_AJ_P0026735 Mybpc1 protein_coding protein_coding MGP_AJ_T0026736.1 MGP_AJ_G0017608.1 mouse_genomes_project 10 86587874 86599043 - Mybpc1 protein_coding retained_intron MGP_AJ_T0026737.1 MGP_AJ_G0017608.1 mouse_genomes_project 10 86587965 86616645 - MGP_AJ_P0026737 Mybpc1 protein_coding protein_coding MGP_AJ_T0009638.1 MGP_AJ_G0007760.1 mouse_genomes_project 10 125339542 125339626 + Mir26a-2 miRNA miRNA MGP_AJ_T0024865.1 MGP_AJ_G0017095.1 mouse_genomes_project 10 28012538 28140515 - MGP_AJ_P0024865 Ncoa7 protein_coding unknown_likely_coding MGP_AJ_T0024866.1 MGP_AJ_G0017095.1 mouse_genomes_project 10 28012539 28022861 - MGP_AJ_P0024866 Ncoa7 protein_coding protein_coding MGP_AJ_T0024867.1 MGP_AJ_G0017095.1 mouse_genomes_project 10 28012539 28170885 - MGP_AJ_P0024867 Ncoa7 protein_coding protein_coding MGP_AJ_T0026287.1 MGP_AJ_G0017488.1 mouse_genomes_project 10 78391998 78404691 + MGP_AJ_P0026287 Scamp4 protein_coding protein_coding MGP_AJ_T0026288.1 MGP_AJ_G0017488.1 mouse_genomes_project 10 78392369 78403871 + MGP_AJ_P0026288 Scamp4 protein_coding protein_coding MGP_AJ_T0026379.1 MGP_AJ_G0017520.1 mouse_genomes_project 10 78998554 79002422 - MGP_AJ_P0026379 Nmrk2 protein_coding protein_coding MGP_AJ_T0098528.1 MGP_AJ_G0036512.1 mouse_genomes_project 10 76225966 76226082 + Gm25164 rRNA rRNA MGP_AJ_T0024861.1 MGP_AJ_G0017093.1 mouse_genomes_project 10 27900737 27966884 - MGP_AJ_P0024861 Trmt11 protein_coding protein_coding MGP_AJ_T0006088.1 MGP_AJ_G0005094.1 mouse_genomes_project 10 31792440 31795436 - Gm26564 lincRNA lincRNA MGP_AJ_T0025526.1 MGP_AJ_G0017303.1 mouse_genomes_project 10 65094908 65097130 + MGP_AJ_P0025526 Gm10797 protein_coding protein_coding MGP_AJ_T0026575.1 MGP_AJ_G0017564.1 mouse_genomes_project 10 81172341 81270176 - MGP_AJ_P0026575 protein_coding unknown_likely_coding MGP_AJ_T0026576.1 MGP_AJ_G0017564.1 mouse_genomes_project 10 81242709 81246067 - protein_coding processed_transcript MGP_AJ_T0026577.1 MGP_AJ_G0017564.1 mouse_genomes_project 10 81258635 81266092 - MGP_AJ_P0026577 protein_coding protein_coding MGP_AJ_T0026578.1 MGP_AJ_G0017564.1 mouse_genomes_project 10 81258762 81280624 - MGP_AJ_P0026578 protein_coding protein_coding MGP_AJ_T0026579.1 MGP_AJ_G0017564.1 mouse_genomes_project 10 81258992 81278586 - MGP_AJ_P0026579 protein_coding protein_coding MGP_AJ_T0025045.1 MGP_AJ_G0017159.1 mouse_genomes_project 10 39446531 39555679 - MGP_AJ_P0025045 protein_coding protein_coding MGP_AJ_T0025046.1 MGP_AJ_G0017159.1 mouse_genomes_project 10 39446534 39513926 - protein_coding retained_intron MGP_AJ_T0025047.1 MGP_AJ_G0017159.1 mouse_genomes_project 10 39446541 39555576 - MGP_AJ_P0025047 protein_coding protein_coding MGP_AJ_T0025048.1 MGP_AJ_G0017159.1 mouse_genomes_project 10 39447592 39513304 - protein_coding retained_intron MGP_AJ_T0025049.1 MGP_AJ_G0017159.1 mouse_genomes_project 10 39448348 39555685 - MGP_AJ_P0025049 protein_coding nonsense_mediated_decay MGP_AJ_T0025050.1 MGP_AJ_G0017159.1 mouse_genomes_project 10 39523796 39530349 - MGP_AJ_P0025050 protein_coding protein_coding MGP_AJ_T0025051.1 MGP_AJ_G0017159.1 mouse_genomes_project 10 39536997 39555574 - MGP_AJ_P0025051 protein_coding protein_coding MGP_AJ_T0025052.1 MGP_AJ_G0017159.1 mouse_genomes_project 10 39537538 39555576 - MGP_AJ_P0025052 protein_coding protein_coding MGP_AJ_T0025985.1 MGP_AJ_G0017411.1 mouse_genomes_project 10 76607805 76662257 + MGP_AJ_P0025985 protein_coding protein_coding MGP_AJ_T0026321.1 MGP_AJ_G0017500.1 mouse_genomes_project 10 78618992 78621521 + Oaz1 protein_coding retained_intron MGP_AJ_T0026322.1 MGP_AJ_G0017500.1 mouse_genomes_project 10 78620022 78621214 + MGP_AJ_P0026322 Oaz1 protein_coding protein_coding MGP_AJ_T0100506.1 MGP_AJ_G0038472.1 mouse_genomes_project 10 18948347 18948456 - Gm23839 snoRNA snoRNA MGP_AJ_T0025235.1 MGP_AJ_G0017225.1 mouse_genomes_project 10 55938619 56014033 + MGP_AJ_P0025235 Ccdc138 protein_coding protein_coding MGP_AJ_T0025236.1 MGP_AJ_G0017225.1 mouse_genomes_project 10 55938864 56014034 + MGP_AJ_P0025236 Ccdc138 protein_coding unknown_likely_coding MGP_AJ_T0006128.1 MGP_AJ_G0005127.1 mouse_genomes_project 10 90173931 90206605 - Rmst lincRNA lincRNA MGP_AJ_T0006129.1 MGP_AJ_G0005127.1 mouse_genomes_project 10 90173937 90174612 - Rmst lincRNA lincRNA MGP_AJ_T0006130.1 MGP_AJ_G0005127.1 mouse_genomes_project 10 90174025 90206458 - Rmst lincRNA lincRNA MGP_AJ_T0006131.1 MGP_AJ_G0005127.1 mouse_genomes_project 10 90177888 90178395 - Rmst lincRNA lincRNA MGP_AJ_T0006132.1 MGP_AJ_G0005127.1 mouse_genomes_project 10 90184481 90265782 - Rmst lincRNA lincRNA MGP_AJ_T0006133.1 MGP_AJ_G0005127.1 mouse_genomes_project 10 90184481 90266182 - Rmst lincRNA lincRNA MGP_AJ_T0006134.1 MGP_AJ_G0005127.1 mouse_genomes_project 10 90186622 90265700 - Rmst lincRNA lincRNA MGP_AJ_T0006135.1 MGP_AJ_G0005127.1 mouse_genomes_project 10 90236583 90266179 - Rmst lincRNA lincRNA MGP_AJ_T0006136.1 MGP_AJ_G0005127.1 mouse_genomes_project 10 90238298 90239611 - Rmst lincRNA lincRNA MGP_AJ_T0006137.1 MGP_AJ_G0005127.1 mouse_genomes_project 10 90238318 90264197 - Rmst lincRNA lincRNA MGP_AJ_T0006138.1 MGP_AJ_G0005127.1 mouse_genomes_project 10 90238344 90265983 - Rmst lincRNA lincRNA MGP_AJ_T0006140.1 MGP_AJ_G0005127.1 mouse_genomes_project 10 90263157 90263217 - Rmst lincRNA misc_RNA MGP_AJ_T0006141.1 MGP_AJ_G0005127.1 mouse_genomes_project 10 90263157 90263815 - Rmst lincRNA lincRNA MGP_AJ_T0006142.1 MGP_AJ_G0005127.1 mouse_genomes_project 10 90263200 90266182 - Rmst lincRNA lincRNA MGP_AJ_T0012433.1 MGP_AJ_G0010528.1 mouse_genomes_project 10 77643828 77644078 + processed_pseudogene processed_pseudogene MGP_AJ_T0026246.1 MGP_AJ_G0017478.1 mouse_genomes_project 10 78148364 78155668 - MGP_AJ_P0026246 Mex3d protein_coding protein_coding MGP_AJ_T0026247.1 MGP_AJ_G0017478.1 mouse_genomes_project 10 78148366 78155660 - MGP_AJ_P0026247 Mex3d protein_coding protein_coding MGP_AJ_T0026248.1 MGP_AJ_G0017478.1 mouse_genomes_project 10 78148463 78155268 - MGP_AJ_P0026248 Mex3d protein_coding protein_coding MGP_AJ_T0026093.1 MGP_AJ_G0017445.1 mouse_genomes_project 10 77645947 77647751 + MGP_AJ_P0026093 Cfd protein_coding protein_coding MGP_AJ_T0025843.1 MGP_AJ_G0017369.1 mouse_genomes_project 10 74639034 74649150 + MGP_AJ_P0025843 Slc19a1 protein_coding protein_coding MGP_AJ_T0025844.1 MGP_AJ_G0017369.1 mouse_genomes_project 10 74639064 74648636 + MGP_AJ_P0025844 Slc19a1 protein_coding protein_coding MGP_AJ_T0025845.1 MGP_AJ_G0017369.1 mouse_genomes_project 10 74639477 74657221 + MGP_AJ_P0025845 Slc19a1 protein_coding protein_coding MGP_AJ_T0025846.1 MGP_AJ_G0017369.1 mouse_genomes_project 10 74640005 74657220 + MGP_AJ_P0025846 Slc19a1 protein_coding protein_coding MGP_AJ_T0025847.1 MGP_AJ_G0017369.1 mouse_genomes_project 10 74640061 74653057 + MGP_AJ_P0025847 Slc19a1 protein_coding protein_coding MGP_AJ_T0025848.1 MGP_AJ_G0017369.1 mouse_genomes_project 10 74640074 74649745 + MGP_AJ_P0025848 Slc19a1 protein_coding protein_coding MGP_AJ_T0025849.1 MGP_AJ_G0017369.1 mouse_genomes_project 10 74640112 74649119 + MGP_AJ_P0025849 Slc19a1 protein_coding protein_coding MGP_AJ_T0025850.1 MGP_AJ_G0017369.1 mouse_genomes_project 10 74649288 74651687 + Slc19a1 protein_coding retained_intron MGP_AJ_T0025851.1 MGP_AJ_G0017369.1 mouse_genomes_project 10 74649579 74667791 + MGP_AJ_P0025851 Slc19a1 protein_coding protein_coding MGP_AJ_T0100556.1 MGP_AJ_G0038522.1 mouse_genomes_project 10 126487641 126487715 + Snord59a snoRNA snoRNA MGP_AJ_T0024643.1 MGP_AJ_G0017014.1 mouse_genomes_project 10 15191945 15279618 - MGP_AJ_P0024643 Ect2l protein_coding protein_coding MGP_AJ_T0027048.1 MGP_AJ_G0017698.1 mouse_genomes_project 10 109561095 109585591 + MGP_AJ_P0027048 Nap1l1 protein_coding protein_coding MGP_AJ_T0027049.1 MGP_AJ_G0017698.1 mouse_genomes_project 10 109568519 109586847 + MGP_AJ_P0027049 Nap1l1 protein_coding protein_coding MGP_AJ_T0027134.1 MGP_AJ_G0017735.1 mouse_genomes_project 10 115552606 115585234 - MGP_AJ_P0027134 Cpsf6 protein_coding protein_coding MGP_AJ_T0027135.1 MGP_AJ_G0017735.1 mouse_genomes_project 10 115556971 115585237 - MGP_AJ_P0027135 Cpsf6 protein_coding protein_coding MGP_AJ_T0027136.1 MGP_AJ_G0017735.1 mouse_genomes_project 10 115556974 115585193 - MGP_AJ_P0027136 Cpsf6 protein_coding protein_coding MGP_AJ_T0027137.1 MGP_AJ_G0017735.1 mouse_genomes_project 10 115557306 115568873 - MGP_AJ_P0027137 Cpsf6 protein_coding nonsense_mediated_decay MGP_AJ_T0027138.1 MGP_AJ_G0017735.1 mouse_genomes_project 10 115561736 115585192 - MGP_AJ_P0027138 Cpsf6 protein_coding protein_coding MGP_AJ_T0027139.1 MGP_AJ_G0017735.1 mouse_genomes_project 10 115563458 115563989 - MGP_AJ_P0027139 Cpsf6 protein_coding protein_coding MGP_AJ_T0027140.1 MGP_AJ_G0017735.1 mouse_genomes_project 10 115566834 115571162 - Cpsf6 protein_coding retained_intron MGP_AJ_T0027141.1 MGP_AJ_G0017735.1 mouse_genomes_project 10 115574182 115588403 - MGP_AJ_P0027141 Cpsf6 protein_coding protein_coding MGP_AJ_T0006069.1 MGP_AJ_G0005080.1 mouse_genomes_project 10 5863388 5865688 + Gm26674 lincRNA lincRNA MGP_AJ_T0006084.1 MGP_AJ_G0005090.1 mouse_genomes_project 10 18806860 18810000 + Gm29323 lincRNA lincRNA MGP_AJ_T0024856.1 MGP_AJ_G0017090.1 mouse_genomes_project 10 26689930 26706187 - MGP_AJ_P0024856 Rnf146 protein_coding protein_coding MGP_AJ_T0024857.1 MGP_AJ_G0017090.1 mouse_genomes_project 10 26689935 26705785 - MGP_AJ_P0024857 Rnf146 protein_coding protein_coding MGP_AJ_T0024858.1 MGP_AJ_G0017090.1 mouse_genomes_project 10 26690417 26701473 - MGP_AJ_P0024858 Rnf146 protein_coding protein_coding MGP_AJ_T0009580.1 MGP_AJ_G0007702.1 mouse_genomes_project 10 42561520 42561631 - Gm24271 miRNA miRNA MGP_AJ_T0027129.1 MGP_AJ_G0017731.1 mouse_genomes_project 10 115434475 115440893 - MGP_AJ_P0027129 9530003J23Rik protein_coding protein_coding MGP_AJ_T0027130.1 MGP_AJ_G0017731.1 mouse_genomes_project 10 115435999 115440942 - MGP_AJ_P0027130 9530003J23Rik protein_coding protein_coding MGP_AJ_T0100502.1 MGP_AJ_G0038468.1 mouse_genomes_project 10 8902020 8902146 + Gm25011 snoRNA snoRNA MGP_AJ_T0024981.1 MGP_AJ_G0017140.1 mouse_genomes_project 10 37857365 37993099 + MGP_AJ_P0024981 Cdk19 protein_coding protein_coding MGP_AJ_T0024982.1 MGP_AJ_G0017140.1 mouse_genomes_project 10 37857365 37993099 + MGP_AJ_P0024982 Cdk19 protein_coding protein_coding MGP_AJ_T0000829.1 MGP_AJ_G0000764.1 mouse_genomes_project 10 109905414 109905712 + TEC TEC MGP_AJ_T0025692.1 MGP_AJ_G0017325.1 mouse_genomes_project 10 72515580 72592039 - MGP_AJ_P0025692 Rsph14 protein_coding protein_coding MGP_AJ_T0025693.1 MGP_AJ_G0017325.1 mouse_genomes_project 10 72515580 72592027 - MGP_AJ_P0025693 Rsph14 protein_coding protein_coding MGP_AJ_T0025694.1 MGP_AJ_G0017325.1 mouse_genomes_project 10 72515580 72592060 - MGP_AJ_P0025694 Rsph14 protein_coding protein_coding MGP_AJ_T0025695.1 MGP_AJ_G0017325.1 mouse_genomes_project 10 72517786 72592027 - MGP_AJ_P0025695 Rsph14 protein_coding protein_coding MGP_AJ_T0025696.1 MGP_AJ_G0017325.1 mouse_genomes_project 10 72519784 72592036 - MGP_AJ_P0025696 Rsph14 protein_coding protein_coding MGP_AJ_T0025700.1 MGP_AJ_G0017325.1 mouse_genomes_project 10 72581774 72592002 - MGP_AJ_P0025700 Rsph14 protein_coding protein_coding MGP_AJ_T0025701.1 MGP_AJ_G0017325.1 mouse_genomes_project 10 72583983 72592060 - Rsph14 protein_coding retained_intron MGP_AJ_T0011287.1 MGP_AJ_G0009409.1 mouse_genomes_project 10 113077621 113077946 - Gm25319 misc_RNA misc_RNA MGP_AJ_T0026671.1 MGP_AJ_G0017594.1 mouse_genomes_project 10 84860884 84913564 + MGP_AJ_P0026671 Nt5dc3 protein_coding protein_coding MGP_AJ_T0025353.1 MGP_AJ_G0017256.1 mouse_genomes_project 10 58836175 58899983 - MGP_AJ_P0025353 Pald1 protein_coding protein_coding MGP_AJ_T0027047.1 MGP_AJ_G0017697.1 mouse_genomes_project 10 109378898 109381956 + MGP_AJ_P0027047 Bbs10 protein_coding protein_coding MGP_AJ_T0006146.1 MGP_AJ_G0005132.1 mouse_genomes_project 10 93559582 93570847 + 5730420D15Rik lincRNA lincRNA MGP_AJ_T0024901.1 MGP_AJ_G0017116.1 mouse_genomes_project 10 31785191 31810154 - Nt5dc1 protein_coding processed_transcript MGP_AJ_T0024903.1 MGP_AJ_G0017116.1 mouse_genomes_project 10 31800137 31920792 - MGP_AJ_P0024903 Nt5dc1 protein_coding protein_coding MGP_AJ_T0024904.1 MGP_AJ_G0017116.1 mouse_genomes_project 10 31800137 31920779 - MGP_AJ_P0024904 Nt5dc1 protein_coding protein_coding MGP_AJ_T0024905.1 MGP_AJ_G0017116.1 mouse_genomes_project 10 31800793 31920768 - Nt5dc1 protein_coding processed_transcript MGP_AJ_T0024907.1 MGP_AJ_G0017116.1 mouse_genomes_project 10 31899147 31920721 - MGP_AJ_P0024907 Nt5dc1 protein_coding protein_coding MGP_AJ_T0025058.1 MGP_AJ_G0017161.1 mouse_genomes_project 10 39856352 40032684 - MGP_AJ_P0025058 Lace1 protein_coding protein_coding MGP_AJ_T0025059.1 MGP_AJ_G0017161.1 mouse_genomes_project 10 39856360 40032698 - MGP_AJ_P0025059 Lace1 protein_coding nonsense_mediated_decay MGP_AJ_T0025060.1 MGP_AJ_G0017161.1 mouse_genomes_project 10 39857354 39974351 - MGP_AJ_P0025060 Lace1 protein_coding nonsense_mediated_decay MGP_AJ_T0025193.1 MGP_AJ_G0017212.1 mouse_genomes_project 10 54046833 54060212 + MGP_AJ_P0025193 Gja1 protein_coding protein_coding MGP_AJ_T0027240.1 MGP_AJ_G0017765.1 mouse_genomes_project 10 120961319 121167310 + Ppm1h protein_coding retained_intron MGP_AJ_T0027241.1 MGP_AJ_G0017765.1 mouse_genomes_project 10 120961335 121209347 + MGP_AJ_P0027241 Ppm1h protein_coding protein_coding MGP_AJ_T0027242.1 MGP_AJ_G0017765.1 mouse_genomes_project 10 120961339 121231266 + MGP_AJ_P0027242 Ppm1h protein_coding protein_coding MGP_AJ_T0027243.1 MGP_AJ_G0017765.1 mouse_genomes_project 10 121044603 121099940 + Ppm1h protein_coding processed_transcript MGP_AJ_T0027244.1 MGP_AJ_G0017765.1 mouse_genomes_project 10 121099712 121104346 + Ppm1h protein_coding retained_intron MGP_AJ_T0027245.1 MGP_AJ_G0017765.1 mouse_genomes_project 10 121099870 121226760 + Ppm1h protein_coding retained_intron MGP_AJ_T0027246.1 MGP_AJ_G0017765.1 mouse_genomes_project 10 121099915 121173180 + Ppm1h protein_coding processed_transcript MGP_AJ_T0027247.1 MGP_AJ_G0017765.1 mouse_genomes_project 10 121182171 121226921 + MGP_AJ_P0027247 Ppm1h protein_coding protein_coding MGP_AJ_T0026646.1 MGP_AJ_G0017587.1 mouse_genomes_project 10 84072084 84098391 + MGP_AJ_P0026646 Fbxo7 protein_coding nonsense_mediated_decay MGP_AJ_T0026647.1 MGP_AJ_G0017587.1 mouse_genomes_project 10 84072116 84079222 + MGP_AJ_P0026647 Fbxo7 protein_coding nonsense_mediated_decay MGP_AJ_T0026648.1 MGP_AJ_G0017587.1 mouse_genomes_project 10 84072120 84103668 + MGP_AJ_P0026648 Fbxo7 protein_coding protein_coding MGP_AJ_T0026649.1 MGP_AJ_G0017587.1 mouse_genomes_project 10 84072286 84098421 + MGP_AJ_P0026649 Fbxo7 protein_coding protein_coding MGP_AJ_T0026650.1 MGP_AJ_G0017587.1 mouse_genomes_project 10 84083068 84101969 + Fbxo7 protein_coding processed_transcript MGP_AJ_T0026651.1 MGP_AJ_G0017587.1 mouse_genomes_project 10 84092549 84096907 + Fbxo7 protein_coding retained_intron MGP_AJ_T0006077.1 MGP_AJ_G0005086.1 mouse_genomes_project 10 13971196 14117529 - Gm20125 lincRNA lincRNA MGP_AJ_T0099243.1 MGP_AJ_G0037209.1 mouse_genomes_project 10 5618912 5619018 + Gm24374 snRNA snRNA MGP_AJ_T0027271.1 MGP_AJ_G0017776.1 mouse_genomes_project 10 125385391 125387160 + MGP_AJ_P0027271 Mettl1 protein_coding protein_coding MGP_AJ_T0027272.1 MGP_AJ_G0017776.1 mouse_genomes_project 10 125385909 125390342 + MGP_AJ_P0027272 Mettl1 protein_coding protein_coding MGP_AJ_T0027273.1 MGP_AJ_G0017776.1 mouse_genomes_project 10 125385934 125387980 + Mettl1 protein_coding retained_intron MGP_AJ_T0027274.1 MGP_AJ_G0017776.1 mouse_genomes_project 10 125385935 125389593 + MGP_AJ_P0027274 Mettl1 protein_coding protein_coding MGP_AJ_T0027275.1 MGP_AJ_G0017776.1 mouse_genomes_project 10 125385960 125389876 + MGP_AJ_P0027275 Mettl1 protein_coding nonsense_mediated_decay MGP_AJ_T0100504.1 MGP_AJ_G0038470.1 mouse_genomes_project 10 11240934 11241045 + Gm24343 snoRNA snoRNA MGP_AJ_T0027289.1 MGP_AJ_G0017780.1 mouse_genomes_project 10 125411474 125414419 - MGP_AJ_P0027289 Tspan31 protein_coding protein_coding MGP_AJ_T0026026.1 MGP_AJ_G0017430.1 mouse_genomes_project 10 77432948 77439148 + MGP_AJ_P0026026 Cdc34 protein_coding protein_coding MGP_AJ_T0026027.1 MGP_AJ_G0017430.1 mouse_genomes_project 10 77433057 77439148 + MGP_AJ_P0026027 Cdc34 protein_coding protein_coding MGP_AJ_T0026963.1 MGP_AJ_G0017672.1 mouse_genomes_project 10 98740343 98753162 + MGP_AJ_P0026963 1700017N19Rik protein_coding protein_coding MGP_AJ_T0026964.1 MGP_AJ_G0017672.1 mouse_genomes_project 10 98742182 98768103 + MGP_AJ_P0026964 1700017N19Rik protein_coding protein_coding MGP_AJ_T0026965.1 MGP_AJ_G0017672.1 mouse_genomes_project 10 98742202 98768188 + MGP_AJ_P0026965 1700017N19Rik protein_coding protein_coding MGP_AJ_T0026966.1 MGP_AJ_G0017672.1 mouse_genomes_project 10 98742208 98762308 + MGP_AJ_P0026966 1700017N19Rik protein_coding protein_coding MGP_AJ_T0026967.1 MGP_AJ_G0017672.1 mouse_genomes_project 10 98742213 98768182 + MGP_AJ_P0026967 1700017N19Rik protein_coding nonsense_mediated_decay MGP_AJ_T0026968.1 MGP_AJ_G0017672.1 mouse_genomes_project 10 98742217 98768182 + MGP_AJ_P0026968 1700017N19Rik protein_coding protein_coding MGP_AJ_T0026969.1 MGP_AJ_G0017672.1 mouse_genomes_project 10 98742228 98768105 + MGP_AJ_P0026969 1700017N19Rik protein_coding protein_coding MGP_AJ_T0026970.1 MGP_AJ_G0017672.1 mouse_genomes_project 10 98742240 98768192 + MGP_AJ_P0026970 1700017N19Rik protein_coding protein_coding MGP_AJ_T0026971.1 MGP_AJ_G0017672.1 mouse_genomes_project 10 98758945 98768100 + MGP_AJ_P0026971 1700017N19Rik protein_coding protein_coding MGP_AJ_T0027518.1 MGP_AJ_G0017859.1 mouse_genomes_project 10 127260685 127273569 + MGP_AJ_P0027518 Dnajc14 protein_coding unknown_likely_coding MGP_AJ_T0009629.1 MGP_AJ_G0007751.1 mouse_genomes_project 10 114723106 114723201 - Gm25190 miRNA miRNA MGP_AJ_T0012401.1 MGP_AJ_G0010496.1 mouse_genomes_project 10 23992960 23993972 - processed_pseudogene processed_pseudogene MGP_AJ_T0024719.1 MGP_AJ_G0017039.1 mouse_genomes_project 10 18443126 18462492 + MGP_AJ_P0024719 Aldh8a1 protein_coding protein_coding MGP_AJ_T0024720.1 MGP_AJ_G0017039.1 mouse_genomes_project 10 18443135 18451373 + Aldh8a1 protein_coding retained_intron MGP_AJ_T0024721.1 MGP_AJ_G0017039.1 mouse_genomes_project 10 18443182 18454775 + MGP_AJ_P0024721 Aldh8a1 protein_coding protein_coding MGP_AJ_T0006123.1 MGP_AJ_G0005122.1 mouse_genomes_project 10 82593676 82596984 - Gm17249 lincRNA lincRNA MGP_AJ_T0026618.1 MGP_AJ_G0017576.1 mouse_genomes_project 10 83071601 83077078 - MGP_AJ_P0026618 Fhl4 protein_coding protein_coding MGP_AJ_T0025311.1 MGP_AJ_G0017247.1 mouse_genomes_project 10 57830204 57857289 + MGP_AJ_P0025311 Vsir protein_coding protein_coding MGP_AJ_T0025312.1 MGP_AJ_G0017247.1 mouse_genomes_project 10 57830258 57842095 + Vsir protein_coding processed_transcript MGP_AJ_T0025313.1 MGP_AJ_G0017247.1 mouse_genomes_project 10 57830260 57841877 + Vsir protein_coding processed_transcript MGP_AJ_T0025314.1 MGP_AJ_G0017247.1 mouse_genomes_project 10 57830290 57857273 + MGP_AJ_P0025314 Vsir protein_coding protein_coding MGP_AJ_T0025315.1 MGP_AJ_G0017247.1 mouse_genomes_project 10 57830337 57843644 + Vsir protein_coding retained_intron MGP_AJ_T0025316.1 MGP_AJ_G0017247.1 mouse_genomes_project 10 57830365 57852373 + MGP_AJ_P0025316 Vsir protein_coding protein_coding MGP_AJ_T0098815.1 MGP_AJ_G0036799.1 mouse_genomes_project 10 126862194 126862325 + Gm26347 scaRNA scaRNA MGP_AJ_T0024530.1 MGP_AJ_G0016988.1 mouse_genomes_project 10 7659361 7659872 + MGP_AJ_P0024530 Gm10944 protein_coding protein_coding MGP_AJ_T0024883.1 MGP_AJ_G0017103.1 mouse_genomes_project 10 30861776 30960091 - MGP_AJ_P0024883 Clvs2 protein_coding protein_coding MGP_AJ_T0024884.1 MGP_AJ_G0017103.1 mouse_genomes_project 10 30893092 30959518 - Clvs2 protein_coding processed_transcript MGP_AJ_T0024885.1 MGP_AJ_G0017103.1 mouse_genomes_project 10 30932456 30959941 - Clvs2 protein_coding processed_transcript MGP_AJ_T0024886.1 MGP_AJ_G0017103.1 mouse_genomes_project 10 30936855 30959944 - MGP_AJ_P0024886 Clvs2 protein_coding protein_coding MGP_AJ_T0026050.1 MGP_AJ_G0017437.1 mouse_genomes_project 10 77530638 77536009 + MGP_AJ_P0026050 Fstl3 protein_coding protein_coding MGP_AJ_T0026051.1 MGP_AJ_G0017437.1 mouse_genomes_project 10 77530658 77532472 + Fstl3 protein_coding retained_intron MGP_AJ_T0026052.1 MGP_AJ_G0017437.1 mouse_genomes_project 10 77533959 77535986 + Fstl3 protein_coding processed_transcript MGP_AJ_T0026936.1 MGP_AJ_G0017658.1 mouse_genomes_project 10 95851843 95852158 - MGP_AJ_P0026936 Gm10754 protein_coding protein_coding MGP_AJ_T0099290.1 MGP_AJ_G0037256.1 mouse_genomes_project 10 102130346 102130455 + Gm25143 snRNA snRNA MGP_AJ_T0012424.1 MGP_AJ_G0010519.1 mouse_genomes_project 10 60487521 60488147 + processed_pseudogene processed_pseudogene MGP_AJ_T0100547.1 MGP_AJ_G0038513.1 mouse_genomes_project 10 106448875 106449009 + Gm23105 snoRNA snoRNA MGP_AJ_T0006110.1 MGP_AJ_G0005112.1 mouse_genomes_project 10 68848708 68851889 + Gm20609 lincRNA lincRNA MGP_AJ_T0025749.1 MGP_AJ_G0017336.1 mouse_genomes_project 10 73166708 73195802 + MGP_AJ_P0025749 Ggt5 protein_coding protein_coding MGP_AJ_T0025750.1 MGP_AJ_G0017336.1 mouse_genomes_project 10 73166749 73182653 + MGP_AJ_P0025750 Ggt5 protein_coding protein_coding MGP_AJ_T0025751.1 MGP_AJ_G0017336.1 mouse_genomes_project 10 73167160 73182655 + MGP_AJ_P0025751 Ggt5 protein_coding protein_coding MGP_AJ_T0025752.1 MGP_AJ_G0017336.1 mouse_genomes_project 10 73181332 73187714 + Ggt5 protein_coding processed_transcript MGP_AJ_T0099247.1 MGP_AJ_G0037213.1 mouse_genomes_project 10 10893006 10893113 - Gm22995 snRNA snRNA MGP_AJ_T0025630.1 MGP_AJ_G0017319.1 mouse_genomes_project 10 68761529 68774027 - MGP_AJ_P0025630 Tfam protein_coding protein_coding MGP_AJ_T0025631.1 MGP_AJ_G0017319.1 mouse_genomes_project 10 68764516 68771408 - Tfam protein_coding processed_transcript MGP_AJ_T0025632.1 MGP_AJ_G0017319.1 mouse_genomes_project 10 68764527 68774367 - MGP_AJ_P0025632 Tfam protein_coding protein_coding MGP_AJ_T0025633.1 MGP_AJ_G0017319.1 mouse_genomes_project 10 68765186 68773129 - MGP_AJ_P0025633 Tfam protein_coding protein_coding MGP_AJ_T0027215.1 MGP_AJ_G0017755.1 mouse_genomes_project 10 119550734 119602021 - MGP_AJ_P0027215 Tbc1d30 protein_coding protein_coding MGP_AJ_T0024875.1 MGP_AJ_G0017099.1 mouse_genomes_project 10 28699824 28809373 - MGP_AJ_P0024875 Tpd52l1 protein_coding unknown_likely_coding MGP_AJ_T0024876.1 MGP_AJ_G0017099.1 mouse_genomes_project 10 28699834 28809564 - MGP_AJ_P0024876 Tpd52l1 protein_coding protein_coding MGP_AJ_T0100507.1 MGP_AJ_G0038473.1 mouse_genomes_project 10 21090630 21090759 - Snora33 snoRNA snoRNA MGP_AJ_T0026478.1 MGP_AJ_G0017542.1 mouse_genomes_project 10 79335089 79351782 - MGP_AJ_P0026478 Gna11 protein_coding protein_coding MGP_AJ_T0026479.1 MGP_AJ_G0017542.1 mouse_genomes_project 10 79336652 79338661 - Gna11 protein_coding retained_intron MGP_AJ_T0026480.1 MGP_AJ_G0017542.1 mouse_genomes_project 10 79339724 79341725 - Gna11 protein_coding retained_intron MGP_AJ_T0027485.1 MGP_AJ_G0017846.1 mouse_genomes_project 10 126984709 126985901 - MGP_AJ_P0027485 protein_coding protein_coding MGP_AJ_T0027486.1 MGP_AJ_G0017846.1 mouse_genomes_project 10 126984709 126985749 - MGP_AJ_P0027486 protein_coding protein_coding MGP_AJ_T0027487.1 MGP_AJ_G0017846.1 mouse_genomes_project 10 126984709 126985758 - MGP_AJ_P0027487 protein_coding protein_coding MGP_AJ_T0027488.1 MGP_AJ_G0017846.1 mouse_genomes_project 10 126984712 126985734 - protein_coding retained_intron MGP_AJ_T0027489.1 MGP_AJ_G0017846.1 mouse_genomes_project 10 126984715 126985698 - MGP_AJ_P0027489 protein_coding protein_coding MGP_AJ_T0027490.1 MGP_AJ_G0017846.1 mouse_genomes_project 10 126984716 126985755 - protein_coding retained_intron MGP_AJ_T0027491.1 MGP_AJ_G0017846.1 mouse_genomes_project 10 126985071 126985708 - protein_coding retained_intron MGP_AJ_T0026325.1 MGP_AJ_G0017503.1 mouse_genomes_project 10 78647511 78660942 + MGP_AJ_P0026325 Sppl2b protein_coding protein_coding MGP_AJ_T0025159.1 MGP_AJ_G0017198.1 mouse_genomes_project 10 49874050 49963670 + MGP_AJ_P0025159 Dcbld1 protein_coding protein_coding MGP_AJ_T0025160.1 MGP_AJ_G0017198.1 mouse_genomes_project 10 49874064 49930579 + Dcbld1 protein_coding retained_intron MGP_AJ_T0025161.1 MGP_AJ_G0017198.1 mouse_genomes_project 10 49874068 49963672 + MGP_AJ_P0025161 Dcbld1 protein_coding protein_coding MGP_AJ_T0025162.1 MGP_AJ_G0017198.1 mouse_genomes_project 10 49874182 49963677 + MGP_AJ_P0025162 Dcbld1 protein_coding unknown_likely_coding MGP_AJ_T0024769.1 MGP_AJ_G0017060.1 mouse_genomes_project 10 21284167 21291519 - MGP_AJ_P0024769 Taar7a protein_coding protein_coding MGP_AJ_T0026024.1 MGP_AJ_G0017428.1 mouse_genomes_project 10 77414570 77418533 + MGP_AJ_P0026024 Madcam1 protein_coding protein_coding MGP_AJ_T0026346.1 MGP_AJ_G0017511.1 mouse_genomes_project 10 78838771 78854863 - MGP_AJ_P0026346 Sgta protein_coding unknown_likely_coding MGP_AJ_T0026347.1 MGP_AJ_G0017511.1 mouse_genomes_project 10 78838777 78854881 - MGP_AJ_P0026347 Sgta protein_coding protein_coding MGP_AJ_T0026663.1 MGP_AJ_G0017591.1 mouse_genomes_project 10 84771339 84784036 - Hsp90b1 protein_coding retained_intron MGP_AJ_T0026664.1 MGP_AJ_G0017591.1 mouse_genomes_project 10 84771979 84787578 - MGP_AJ_P0026664 Hsp90b1 protein_coding protein_coding MGP_AJ_T0026665.1 MGP_AJ_G0017591.1 mouse_genomes_project 10 84773541 84780506 - MGP_AJ_P0026665 Hsp90b1 protein_coding protein_coding MGP_AJ_T0026666.1 MGP_AJ_G0017591.1 mouse_genomes_project 10 84775161 84776862 - Hsp90b1 protein_coding retained_intron MGP_AJ_T0026667.1 MGP_AJ_G0017591.1 mouse_genomes_project 10 84784013 84785162 - Hsp90b1 protein_coding retained_intron MGP_AJ_T0027477.1 MGP_AJ_G0017842.1 mouse_genomes_project 10 126919450 126925478 - MGP_AJ_P0027477 Myl6 protein_coding protein_coding MGP_AJ_T0027478.1 MGP_AJ_G0017842.1 mouse_genomes_project 10 126921239 126925414 - MGP_AJ_P0027478 Myl6 protein_coding unknown_likely_coding MGP_AJ_T0025994.1 MGP_AJ_G0017416.1 mouse_genomes_project 10 76786136 76787216 + MGP_AJ_P0025994 Olfr57 protein_coding protein_coding MGP_AJ_T0027204.1 MGP_AJ_G0017750.1 mouse_genomes_project 10 118634715 118752552 - MGP_AJ_P0027204 Hmga2 protein_coding protein_coding MGP_AJ_T0027205.1 MGP_AJ_G0017750.1 mouse_genomes_project 10 118746381 118752375 - Hmga2 protein_coding retained_intron MGP_AJ_T0024772.1 MGP_AJ_G0017063.1 mouse_genomes_project 10 21332754 21333802 + MGP_AJ_P0024772 Taar7e protein_coding protein_coding MGP_AJ_T0026443.1 MGP_AJ_G0017535.1 mouse_genomes_project 10 79189006 79192931 + MGP_AJ_P0026443 Dohh protein_coding protein_coding MGP_AJ_T0026444.1 MGP_AJ_G0017535.1 mouse_genomes_project 10 79189037 79192030 + MGP_AJ_P0026444 Dohh protein_coding protein_coding MGP_AJ_T0026445.1 MGP_AJ_G0017535.1 mouse_genomes_project 10 79189044 79196139 + MGP_AJ_P0026445 Dohh protein_coding nonsense_mediated_decay MGP_AJ_T0026446.1 MGP_AJ_G0017535.1 mouse_genomes_project 10 79189045 79190680 + Dohh protein_coding retained_intron MGP_AJ_T0026447.1 MGP_AJ_G0017535.1 mouse_genomes_project 10 79189473 79190573 + MGP_AJ_P0026447 Dohh protein_coding protein_coding MGP_AJ_T0026448.1 MGP_AJ_G0017535.1 mouse_genomes_project 10 79190199 79192260 + MGP_AJ_P0026448 Dohh protein_coding protein_coding MGP_AJ_T0026449.1 MGP_AJ_G0017535.1 mouse_genomes_project 10 79191895 79195437 + MGP_AJ_P0026449 Dohh protein_coding protein_coding MGP_AJ_T0026450.1 MGP_AJ_G0017535.1 mouse_genomes_project 10 79193583 79195846 + Dohh protein_coding processed_transcript MGP_AJ_T0026451.1 MGP_AJ_G0017535.1 mouse_genomes_project 10 79194907 79195714 + Dohh protein_coding retained_intron MGP_AJ_T0025832.1 MGP_AJ_G0017367.1 mouse_genomes_project 10 74361417 74426260 - MGP_AJ_P0025832 Pcbp3 protein_coding unknown_likely_coding MGP_AJ_T0025833.1 MGP_AJ_G0017367.1 mouse_genomes_project 10 74361422 74564741 - MGP_AJ_P0025833 Pcbp3 protein_coding protein_coding MGP_AJ_T0025834.1 MGP_AJ_G0017367.1 mouse_genomes_project 10 74361423 74422332 - Pcbp3 protein_coding processed_transcript MGP_AJ_T0025835.1 MGP_AJ_G0017367.1 mouse_genomes_project 10 74361423 74425404 - MGP_AJ_P0025835 Pcbp3 protein_coding protein_coding MGP_AJ_T0025836.1 MGP_AJ_G0017367.1 mouse_genomes_project 10 74361425 74564840 - MGP_AJ_P0025836 Pcbp3 protein_coding protein_coding MGP_AJ_T0025837.1 MGP_AJ_G0017367.1 mouse_genomes_project 10 74361797 74397428 - Pcbp3 protein_coding processed_transcript MGP_AJ_T0025838.1 MGP_AJ_G0017367.1 mouse_genomes_project 10 74361935 74387986 - MGP_AJ_P0025838 Pcbp3 protein_coding protein_coding MGP_AJ_T0025839.1 MGP_AJ_G0017367.1 mouse_genomes_project 10 74362870 74416249 - MGP_AJ_P0025839 Pcbp3 protein_coding nonsense_mediated_decay MGP_AJ_T0025840.1 MGP_AJ_G0017367.1 mouse_genomes_project 10 74389366 74508777 - Pcbp3 protein_coding processed_transcript MGP_AJ_T0025841.1 MGP_AJ_G0017367.1 mouse_genomes_project 10 74397411 74418942 - Pcbp3 protein_coding processed_transcript MGP_AJ_T0027219.1 MGP_AJ_G0017759.1 mouse_genomes_project 10 119878338 119923468 - MGP_AJ_P0027219 Xpot protein_coding protein_coding MGP_AJ_T0027220.1 MGP_AJ_G0017759.1 mouse_genomes_project 10 119884477 119923550 - MGP_AJ_P0027220 Xpot protein_coding unknown_likely_coding MGP_AJ_T0003013.1 MGP_AJ_G0002818.1 mouse_genomes_project 10 14825268 14830076 - Gm20655 antisense antisense MGP_AJ_T0003014.1 MGP_AJ_G0002818.1 mouse_genomes_project 10 14827852 14834665 - Gm20655 antisense antisense MGP_AJ_T0024414.1 MGP_AJ_G0016965.1 mouse_genomes_project 10 2733625 2745728 - MGP_AJ_P0024414 Mtrf1l protein_coding protein_coding MGP_AJ_T0024415.1 MGP_AJ_G0016965.1 mouse_genomes_project 10 2734957 2737537 - Mtrf1l protein_coding processed_transcript MGP_AJ_T0024416.1 MGP_AJ_G0016965.1 mouse_genomes_project 10 2741006 2745364 - Mtrf1l protein_coding processed_transcript MGP_AJ_T0006149.1 MGP_AJ_G0005134.1 mouse_genomes_project 10 97463778 97585358 + B530045E10Rik lincRNA lincRNA MGP_AJ_T0006150.1 MGP_AJ_G0005134.1 mouse_genomes_project 10 97582832 97585358 + B530045E10Rik lincRNA lincRNA MGP_AJ_T0025638.1 MGP_AJ_G0017322.1 mouse_genomes_project 10 68886082 68924514 + MGP_AJ_P0025638 Ipmk protein_coding protein_coding MGP_AJ_T0025639.1 MGP_AJ_G0017322.1 mouse_genomes_project 10 68886155 68920868 + MGP_AJ_P0025639 Ipmk protein_coding nonsense_mediated_decay MGP_AJ_T0025640.1 MGP_AJ_G0017322.1 mouse_genomes_project 10 68886155 68916041 + MGP_AJ_P0025640 Ipmk protein_coding protein_coding MGP_AJ_T0025641.1 MGP_AJ_G0017322.1 mouse_genomes_project 10 68886155 68920629 + MGP_AJ_P0025641 Ipmk protein_coding protein_coding MGP_AJ_T0025642.1 MGP_AJ_G0017322.1 mouse_genomes_project 10 68886162 68902521 + Ipmk protein_coding retained_intron MGP_AJ_T0025643.1 MGP_AJ_G0017322.1 mouse_genomes_project 10 68920377 68976035 + MGP_AJ_P0025643 Ipmk protein_coding nonsense_mediated_decay MGP_AJ_T0025644.1 MGP_AJ_G0017322.1 mouse_genomes_project 10 68952335 68976182 + Ipmk protein_coding processed_transcript MGP_AJ_T0027582.1 MGP_AJ_G0017899.1 mouse_genomes_project 10 128271772 128272769 - MGP_AJ_P0027582 Olfr807 protein_coding protein_coding MGP_AJ_T0024703.1 MGP_AJ_G0017034.1 mouse_genomes_project 10 17451826 17780408 - MGP_AJ_P0024703 Pde7b protein_coding protein_coding MGP_AJ_T0024704.1 MGP_AJ_G0017034.1 mouse_genomes_project 10 17452750 17609250 - MGP_AJ_P0024704 Pde7b protein_coding nonsense_mediated_decay MGP_AJ_T0024705.1 MGP_AJ_G0017034.1 mouse_genomes_project 10 17454240 17780026 - MGP_AJ_P0024705 Pde7b protein_coding protein_coding MGP_AJ_T0024706.1 MGP_AJ_G0017034.1 mouse_genomes_project 10 17454240 17609250 - MGP_AJ_P0024706 Pde7b protein_coding protein_coding MGP_AJ_T0024707.1 MGP_AJ_G0017034.1 mouse_genomes_project 10 17461415 17609392 - MGP_AJ_P0024707 Pde7b protein_coding protein_coding MGP_AJ_T0024708.1 MGP_AJ_G0017034.1 mouse_genomes_project 10 17536403 17780362 - Pde7b protein_coding retained_intron MGP_AJ_T0024709.1 MGP_AJ_G0017034.1 mouse_genomes_project 10 17677578 17780362 - Pde7b protein_coding retained_intron MGP_AJ_T0027280.1 MGP_AJ_G0017779.1 mouse_genomes_project 10 125407476 125412078 + MGP_AJ_P0027280 protein_coding protein_coding MGP_AJ_T0027281.1 MGP_AJ_G0017779.1 mouse_genomes_project 10 125407545 125411160 + MGP_AJ_P0027281 protein_coding protein_coding MGP_AJ_T0027282.1 MGP_AJ_G0017779.1 mouse_genomes_project 10 125407546 125410335 + MGP_AJ_P0027282 protein_coding protein_coding MGP_AJ_T0027283.1 MGP_AJ_G0017779.1 mouse_genomes_project 10 125407551 125411160 + MGP_AJ_P0027283 protein_coding nonsense_mediated_decay MGP_AJ_T0027284.1 MGP_AJ_G0017779.1 mouse_genomes_project 10 125407556 125411455 + protein_coding retained_intron MGP_AJ_T0027285.1 MGP_AJ_G0017779.1 mouse_genomes_project 10 125407558 125409438 + protein_coding retained_intron MGP_AJ_T0027286.1 MGP_AJ_G0017779.1 mouse_genomes_project 10 125407810 125410389 + MGP_AJ_P0027286 protein_coding protein_coding MGP_AJ_T0027287.1 MGP_AJ_G0017779.1 mouse_genomes_project 10 125408240 125409473 + protein_coding retained_intron MGP_AJ_T0027288.1 MGP_AJ_G0017779.1 mouse_genomes_project 10 125410233 125411393 + protein_coding retained_intron MGP_AJ_T0026604.1 MGP_AJ_G0017571.1 mouse_genomes_project 10 82499237 82506821 - MGP_AJ_P0026604 Ckap4 protein_coding protein_coding MGP_AJ_T0026605.1 MGP_AJ_G0017571.1 mouse_genomes_project 10 82499568 82506969 - MGP_AJ_P0026605 Ckap4 protein_coding protein_coding MGP_AJ_T0098789.1 MGP_AJ_G0036773.1 mouse_genomes_project 10 40389598 40389903 - Gm26464 ribozyme ribozyme MGP_AJ_T0000835.1 MGP_AJ_G0000770.1 mouse_genomes_project 10 118942723 118946442 - TEC TEC MGP_AJ_T0098523.1 MGP_AJ_G0036507.1 mouse_genomes_project 10 28040128 28040222 - Gm24189 rRNA rRNA MGP_AJ_T0100520.1 MGP_AJ_G0038486.1 mouse_genomes_project 10 38750173 38750305 + Gm25526 snoRNA snoRNA MGP_AJ_T0006068.1 MGP_AJ_G0005079.1 mouse_genomes_project 10 1313359 1318450 + Gm21781 lincRNA lincRNA MGP_AJ_T0011284.1 MGP_AJ_G0009406.1 mouse_genomes_project 10 93073650 93073954 + Gm25266 misc_RNA misc_RNA MGP_AJ_T0003063.1 MGP_AJ_G0002857.1 mouse_genomes_project 10 79214153 79216158 + Gm16104 antisense antisense MGP_AJ_T0027210.1 MGP_AJ_G0017753.1 mouse_genomes_project 10 119212384 119267219 - MGP_AJ_P0027210 Lemd3 protein_coding protein_coding MGP_AJ_T0027211.1 MGP_AJ_G0017753.1 mouse_genomes_project 10 119212823 119267219 - MGP_AJ_P0027211 Lemd3 protein_coding protein_coding MGP_AJ_T0003075.1 MGP_AJ_G0002867.1 mouse_genomes_project 10 85056985 85115049 + Gm16271 antisense antisense MGP_AJ_T0099278.1 MGP_AJ_G0037244.1 mouse_genomes_project 10 78245702 78245806 + Gm25044 snRNA snRNA MGP_AJ_T0027382.1 MGP_AJ_G0017808.1 mouse_genomes_project 10 126112720 126120567 + MGP_AJ_P0027382 Zbtb39 protein_coding protein_coding MGP_AJ_T0024919.1 MGP_AJ_G0017122.1 mouse_genomes_project 10 34632959 34638500 - MGP_AJ_P0024919 Marcks protein_coding protein_coding MGP_AJ_T0025433.1 MGP_AJ_G0017279.1 mouse_genomes_project 10 60077630 60116821 - MGP_AJ_P0025433 Kif1bp protein_coding protein_coding MGP_AJ_T0025434.1 MGP_AJ_G0017279.1 mouse_genomes_project 10 60078659 60109277 - MGP_AJ_P0025434 Kif1bp protein_coding protein_coding MGP_AJ_T0025435.1 MGP_AJ_G0017279.1 mouse_genomes_project 10 60097261 60116821 - MGP_AJ_P0025435 Kif1bp protein_coding protein_coding MGP_AJ_T0025436.1 MGP_AJ_G0017279.1 mouse_genomes_project 10 60097335 60104914 - MGP_AJ_P0025436 Kif1bp protein_coding nonsense_mediated_decay MGP_AJ_T0025437.1 MGP_AJ_G0017279.1 mouse_genomes_project 10 60098391 60102371 - Kif1bp protein_coding retained_intron MGP_AJ_T0025438.1 MGP_AJ_G0017279.1 mouse_genomes_project 10 60104663 60109265 - Kif1bp protein_coding retained_intron MGP_AJ_T0025439.1 MGP_AJ_G0017279.1 mouse_genomes_project 10 60108911 60116775 - Kif1bp protein_coding retained_intron MGP_AJ_T0025324.1 MGP_AJ_G0017249.1 mouse_genomes_project 10 58204377 58242549 - MGP_AJ_P0025324 Slc29a3 protein_coding nonsense_mediated_decay MGP_AJ_T0025325.1 MGP_AJ_G0017249.1 mouse_genomes_project 10 58204984 58243535 - MGP_AJ_P0025325 Slc29a3 protein_coding protein_coding MGP_AJ_T0025326.1 MGP_AJ_G0017249.1 mouse_genomes_project 10 58205178 58213469 - Slc29a3 protein_coding retained_intron MGP_AJ_T0025327.1 MGP_AJ_G0017249.1 mouse_genomes_project 10 58210013 58242560 - Slc29a3 protein_coding processed_transcript MGP_AJ_T0017102.1 MGP_AJ_G0015108.1 mouse_genomes_project 10 37121522 37232848 - E130307A14Rik processed_transcript processed_transcript MGP_AJ_T0017103.1 MGP_AJ_G0015108.1 mouse_genomes_project 10 37121524 37232847 - E130307A14Rik processed_transcript processed_transcript MGP_AJ_T0017104.1 MGP_AJ_G0015108.1 mouse_genomes_project 10 37122735 37232657 - E130307A14Rik processed_transcript processed_transcript MGP_AJ_T0017105.1 MGP_AJ_G0015108.1 mouse_genomes_project 10 37122765 37232690 - E130307A14Rik processed_transcript processed_transcript MGP_AJ_T0017106.1 MGP_AJ_G0015108.1 mouse_genomes_project 10 37122808 37232842 - E130307A14Rik processed_transcript processed_transcript MGP_AJ_T0017107.1 MGP_AJ_G0015108.1 mouse_genomes_project 10 37122824 37232655 - E130307A14Rik processed_transcript processed_transcript MGP_AJ_T0017108.1 MGP_AJ_G0015108.1 mouse_genomes_project 10 37123086 37232617 - E130307A14Rik processed_transcript processed_transcript MGP_AJ_T0017109.1 MGP_AJ_G0015108.1 mouse_genomes_project 10 37139566 37146076 - E130307A14Rik processed_transcript processed_transcript MGP_AJ_T0017110.1 MGP_AJ_G0015108.1 mouse_genomes_project 10 37139658 37232823 - E130307A14Rik processed_transcript processed_transcript MGP_AJ_T0017111.1 MGP_AJ_G0015108.1 mouse_genomes_project 10 37153970 37229022 - E130307A14Rik processed_transcript processed_transcript MGP_AJ_T0017112.1 MGP_AJ_G0015108.1 mouse_genomes_project 10 37154538 37232847 - E130307A14Rik processed_transcript processed_transcript MGP_AJ_T0017113.1 MGP_AJ_G0015108.1 mouse_genomes_project 10 37179386 37232847 - E130307A14Rik processed_transcript processed_transcript MGP_AJ_T0017114.1 MGP_AJ_G0015108.1 mouse_genomes_project 10 37222253 37232808 - E130307A14Rik processed_transcript processed_transcript MGP_AJ_T0098894.1 MGP_AJ_G0036877.1 mouse_genomes_project 10 119090050 119091165 - Gm15961 sense_intronic sense_intronic MGP_AJ_T0011290.1 MGP_AJ_G0009412.1 mouse_genomes_project 10 127679803 127680108 - Gm25807 misc_RNA misc_RNA MGP_AJ_T0026949.1 MGP_AJ_G0017665.1 mouse_genomes_project 10 97428348 97432602 + MGP_AJ_P0026949 Dusp6 protein_coding protein_coding MGP_AJ_T0025372.1 MGP_AJ_G0017266.1 mouse_genomes_project 10 59267780 59314817 - MGP_AJ_P0025372 H2afy2 protein_coding protein_coding MGP_AJ_T0026928.1 MGP_AJ_G0017652.1 mouse_genomes_project 10 94307317 94307629 + MGP_AJ_P0026928 Gm5426 protein_coding protein_coding MGP_AJ_T0025516.1 MGP_AJ_G0017300.1 mouse_genomes_project 10 64778990 64797469 - MGP_AJ_P0025516 Nrbf2 protein_coding protein_coding MGP_AJ_T0025517.1 MGP_AJ_G0017300.1 mouse_genomes_project 10 64780141 64797344 - MGP_AJ_P0025517 Nrbf2 protein_coding protein_coding MGP_AJ_T0025095.1 MGP_AJ_G0017170.1 mouse_genomes_project 10 41074512 41111817 + MGP_AJ_P0025095 Bend3 protein_coding protein_coding MGP_AJ_T0025541.1 MGP_AJ_G0017308.1 mouse_genomes_project 10 66243801 66305349 + MGP_AJ_P0025541 Tmem26 protein_coding protein_coding MGP_AJ_T0025101.1 MGP_AJ_G0017173.1 mouse_genomes_project 10 41182840 41188155 + MGP_AJ_P0025101 Cd24a protein_coding protein_coding MGP_AJ_T0025122.1 MGP_AJ_G0017185.1 mouse_genomes_project 10 43025216 43120539 - MGP_AJ_P0025122 Lin28b protein_coding protein_coding MGP_AJ_T0025123.1 MGP_AJ_G0017185.1 mouse_genomes_project 10 43029661 43119797 - MGP_AJ_P0025123 Lin28b protein_coding unknown_likely_coding MGP_AJ_T0012413.1 MGP_AJ_G0010508.1 mouse_genomes_project 10 41425734 41426721 + processed_pseudogene processed_pseudogene MGP_AJ_T0025443.1 MGP_AJ_G0017282.1 mouse_genomes_project 10 60200419 60268961 - MGP_AJ_P0025443 Stox1 protein_coding protein_coding MGP_AJ_T0025444.1 MGP_AJ_G0017282.1 mouse_genomes_project 10 60200419 60268634 - MGP_AJ_P0025444 Stox1 protein_coding protein_coding MGP_AJ_T0025445.1 MGP_AJ_G0017282.1 mouse_genomes_project 10 60207551 60268634 - MGP_AJ_P0025445 Stox1 protein_coding nonsense_mediated_decay MGP_AJ_T0006102.1 MGP_AJ_G0005108.1 mouse_genomes_project 10 63636423 63639863 - 1700023F02Rik lincRNA lincRNA MGP_AJ_T0006103.1 MGP_AJ_G0005108.1 mouse_genomes_project 10 63636423 63771125 - 1700023F02Rik lincRNA lincRNA MGP_AJ_T0006104.1 MGP_AJ_G0005108.1 mouse_genomes_project 10 63636427 63639877 - 1700023F02Rik lincRNA lincRNA MGP_AJ_T0006105.1 MGP_AJ_G0005108.1 mouse_genomes_project 10 63636427 63639884 - 1700023F02Rik lincRNA lincRNA MGP_AJ_T0006106.1 MGP_AJ_G0005108.1 mouse_genomes_project 10 63636494 63638889 - 1700023F02Rik lincRNA lincRNA MGP_AJ_T0027043.1 MGP_AJ_G0017694.1 mouse_genomes_project 10 108990438 109009745 + MGP_AJ_P0027043 Csrp2 protein_coding protein_coding MGP_AJ_T0098787.1 MGP_AJ_G0036771.1 mouse_genomes_project 10 1963550 1963832 - Gm25694 ribozyme ribozyme MGP_AJ_T0025273.1 MGP_AJ_G0017239.1 mouse_genomes_project 10 57336443 57356190 + MGP_AJ_P0025273 Dnajb12 protein_coding protein_coding MGP_AJ_T0025274.1 MGP_AJ_G0017239.1 mouse_genomes_project 10 57336451 57354902 + MGP_AJ_P0025274 Dnajb12 protein_coding nonsense_mediated_decay MGP_AJ_T0025275.1 MGP_AJ_G0017239.1 mouse_genomes_project 10 57336462 57356184 + MGP_AJ_P0025275 Dnajb12 protein_coding protein_coding MGP_AJ_T0025276.1 MGP_AJ_G0017239.1 mouse_genomes_project 10 57336505 57353663 + MGP_AJ_P0025276 Dnajb12 protein_coding protein_coding MGP_AJ_T0025277.1 MGP_AJ_G0017239.1 mouse_genomes_project 10 57336513 57355409 + MGP_AJ_P0025277 Dnajb12 protein_coding protein_coding MGP_AJ_T0003081.1 MGP_AJ_G0002871.1 mouse_genomes_project 10 92678401 92724097 - Tmcc3os antisense antisense MGP_AJ_T0025427.1 MGP_AJ_G0017278.1 mouse_genomes_project 10 60031138 60066493 - MGP_AJ_P0025427 Srgn protein_coding protein_coding MGP_AJ_T0025428.1 MGP_AJ_G0017278.1 mouse_genomes_project 10 60031733 60046905 - MGP_AJ_P0025428 Srgn protein_coding protein_coding MGP_AJ_T0025429.1 MGP_AJ_G0017278.1 mouse_genomes_project 10 60031989 60047088 - MGP_AJ_P0025429 Srgn protein_coding protein_coding MGP_AJ_T0025430.1 MGP_AJ_G0017278.1 mouse_genomes_project 10 60036346 60066467 - MGP_AJ_P0025430 Srgn protein_coding protein_coding MGP_AJ_T0025431.1 MGP_AJ_G0017278.1 mouse_genomes_project 10 60046825 60047247 - MGP_AJ_P0025431 Srgn protein_coding protein_coding MGP_AJ_T0025432.1 MGP_AJ_G0017278.1 mouse_genomes_project 10 60046891 60066467 - Srgn protein_coding processed_transcript MGP_AJ_T0027607.1 MGP_AJ_G0017920.1 mouse_genomes_project 10 128895600 128922905 - MGP_AJ_P0027607 protein_coding protein_coding MGP_AJ_T0102224.1 MGP_AJ_G0039967.1 mouse_genomes_project 10 128519224 128519413 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0026534.1 MGP_AJ_G0017550.1 mouse_genomes_project 10 79971143 79972721 + MGP_AJ_P0026534 protein_coding protein_coding MGP_AJ_T0024838.1 MGP_AJ_G0017084.1 mouse_genomes_project 10 25996655 26214932 + MGP_AJ_P0024838 Themis protein_coding protein_coding MGP_AJ_T0024839.1 MGP_AJ_G0017084.1 mouse_genomes_project 10 25996655 26118394 + MGP_AJ_P0024839 Themis protein_coding protein_coding MGP_AJ_T0024840.1 MGP_AJ_G0017084.1 mouse_genomes_project 10 25996690 26094120 + Themis protein_coding retained_intron MGP_AJ_T0024841.1 MGP_AJ_G0017084.1 mouse_genomes_project 10 25996692 26126409 + MGP_AJ_P0024841 Themis protein_coding protein_coding MGP_AJ_T0024842.1 MGP_AJ_G0017084.1 mouse_genomes_project 10 25996922 26214935 + MGP_AJ_P0024842 Themis protein_coding nonsense_mediated_decay MGP_AJ_T0024843.1 MGP_AJ_G0017084.1 mouse_genomes_project 10 25996928 26068935 + MGP_AJ_P0024843 Themis protein_coding nonsense_mediated_decay MGP_AJ_T0024844.1 MGP_AJ_G0017084.1 mouse_genomes_project 10 25996928 26110287 + MGP_AJ_P0024844 Themis protein_coding protein_coding MGP_AJ_T0027100.1 MGP_AJ_G0017721.1 mouse_genomes_project 10 114607821 114665822 - MGP_AJ_P0027100 Kcnmb4 protein_coding protein_coding MGP_AJ_T0027101.1 MGP_AJ_G0017721.1 mouse_genomes_project 10 114627060 114665379 - MGP_AJ_P0027101 Kcnmb4 protein_coding protein_coding MGP_AJ_T0027102.1 MGP_AJ_G0017721.1 mouse_genomes_project 10 114634331 114637252 - MGP_AJ_P0027102 Kcnmb4 protein_coding protein_coding MGP_AJ_T0027103.1 MGP_AJ_G0017721.1 mouse_genomes_project 10 114654094 114665366 - MGP_AJ_P0027103 Kcnmb4 protein_coding protein_coding MGP_AJ_T0024908.1 MGP_AJ_G0017119.1 mouse_genomes_project 10 31981431 32109823 + MGP_AJ_P0024908 Frk protein_coding protein_coding MGP_AJ_T0024909.1 MGP_AJ_G0017119.1 mouse_genomes_project 10 31981431 32109823 + MGP_AJ_P0024909 Frk protein_coding protein_coding MGP_AJ_T0099271.1 MGP_AJ_G0037237.1 mouse_genomes_project 10 61857927 61858035 - Gm23854 snRNA snRNA MGP_AJ_T0026713.1 MGP_AJ_G0017605.1 mouse_genomes_project 10 86439069 86473881 + MGP_AJ_P0026713 Gnptab protein_coding protein_coding MGP_AJ_T0026714.1 MGP_AJ_G0017605.1 mouse_genomes_project 10 86439161 86473838 + MGP_AJ_P0026714 Gnptab protein_coding protein_coding MGP_AJ_T0026715.1 MGP_AJ_G0017605.1 mouse_genomes_project 10 86439161 86507504 + MGP_AJ_P0026715 Gnptab protein_coding nonsense_mediated_decay MGP_AJ_T0026716.1 MGP_AJ_G0017605.1 mouse_genomes_project 10 86439163 86507513 + MGP_AJ_P0026716 Gnptab protein_coding protein_coding MGP_AJ_T0026717.1 MGP_AJ_G0017605.1 mouse_genomes_project 10 86488805 86492528 + Gnptab protein_coding processed_transcript MGP_AJ_T0026718.1 MGP_AJ_G0017605.1 mouse_genomes_project 10 86492600 86501046 + Gnptab protein_coding processed_transcript MGP_AJ_T0026719.1 MGP_AJ_G0017605.1 mouse_genomes_project 10 86496227 86496913 + Gnptab protein_coding retained_intron MGP_AJ_T0100501.1 MGP_AJ_G0038467.1 mouse_genomes_project 10 8614181 8614311 + Gm22546 snoRNA snoRNA MGP_AJ_T0026623.1 MGP_AJ_G0017581.1 mouse_genomes_project 10 83371754 83644915 + MGP_AJ_P0026623 Btbd11 protein_coding protein_coding MGP_AJ_T0026624.1 MGP_AJ_G0017581.1 mouse_genomes_project 10 83371767 83625190 + MGP_AJ_P0026624 Btbd11 protein_coding protein_coding MGP_AJ_T0026625.1 MGP_AJ_G0017581.1 mouse_genomes_project 10 83578116 83644915 + MGP_AJ_P0026625 Btbd11 protein_coding protein_coding MGP_AJ_T0026626.1 MGP_AJ_G0017581.1 mouse_genomes_project 10 83578126 83585743 + Btbd11 protein_coding processed_transcript MGP_AJ_T0026627.1 MGP_AJ_G0017581.1 mouse_genomes_project 10 83610318 83626229 + Btbd11 protein_coding retained_intron MGP_AJ_T0026628.1 MGP_AJ_G0017581.1 mouse_genomes_project 10 83624168 83644912 + Btbd11 protein_coding processed_transcript MGP_AJ_T0026629.1 MGP_AJ_G0017581.1 mouse_genomes_project 10 83629806 83644915 + Btbd11 protein_coding retained_intron MGP_AJ_T0026630.1 MGP_AJ_G0017581.1 mouse_genomes_project 10 83638786 83642883 + Btbd11 protein_coding retained_intron MGP_AJ_T0017133.1 MGP_AJ_G0015117.1 mouse_genomes_project 10 125633872 125635040 + Gm20492 processed_transcript processed_transcript MGP_AJ_T0024480.1 MGP_AJ_G0016974.1 mouse_genomes_project 10 4644854 4656373 + MGP_AJ_P0024480 Nup43 protein_coding protein_coding MGP_AJ_T0024481.1 MGP_AJ_G0016974.1 mouse_genomes_project 10 4644865 4645643 + Nup43 protein_coding retained_intron MGP_AJ_T0024482.1 MGP_AJ_G0016974.1 mouse_genomes_project 10 4644891 4653572 + Nup43 protein_coding retained_intron MGP_AJ_T0024483.1 MGP_AJ_G0016974.1 mouse_genomes_project 10 4648255 4652746 + Nup43 protein_coding retained_intron MGP_AJ_T0025072.1 MGP_AJ_G0017165.1 mouse_genomes_project 10 40330465 40401626 + MGP_AJ_P0025072 Sec63 protein_coding protein_coding MGP_AJ_T0025073.1 MGP_AJ_G0017165.1 mouse_genomes_project 10 40330584 40399504 + Sec63 protein_coding retained_intron MGP_AJ_T0025074.1 MGP_AJ_G0017165.1 mouse_genomes_project 10 40330775 40381878 + Sec63 protein_coding retained_intron MGP_AJ_T0025075.1 MGP_AJ_G0017165.1 mouse_genomes_project 10 40387063 40398392 + Sec63 protein_coding processed_transcript MGP_AJ_T0025076.1 MGP_AJ_G0017165.1 mouse_genomes_project 10 40387063 40398395 + Sec63 protein_coding processed_transcript MGP_AJ_T0026271.1 MGP_AJ_G0017482.1 mouse_genomes_project 10 78265126 78290464 + MGP_AJ_P0026271 Onecut3 protein_coding protein_coding MGP_AJ_T0024765.1 MGP_AJ_G0017056.1 mouse_genomes_project 10 21242140 21243172 + MGP_AJ_P0024765 Taar3 protein_coding protein_coding MGP_AJ_T0024761.1 MGP_AJ_G0017052.1 mouse_genomes_project 10 21155718 21168103 + MGP_AJ_P0024761 Vnn3 protein_coding protein_coding MGP_AJ_T0025791.1 MGP_AJ_G0017355.1 mouse_genomes_project 10 73796706 73827657 - MGP_AJ_P0025791 Prmt2 protein_coding protein_coding MGP_AJ_T0025792.1 MGP_AJ_G0017355.1 mouse_genomes_project 10 73796711 73827629 - MGP_AJ_P0025792 Prmt2 protein_coding protein_coding MGP_AJ_T0025793.1 MGP_AJ_G0017355.1 mouse_genomes_project 10 73796716 73827622 - MGP_AJ_P0025793 Prmt2 protein_coding nonsense_mediated_decay MGP_AJ_T0025794.1 MGP_AJ_G0017355.1 mouse_genomes_project 10 73796716 73827628 - MGP_AJ_P0025794 Prmt2 protein_coding protein_coding MGP_AJ_T0025795.1 MGP_AJ_G0017355.1 mouse_genomes_project 10 73797460 73827649 - MGP_AJ_P0025795 Prmt2 protein_coding nonsense_mediated_decay MGP_AJ_T0025796.1 MGP_AJ_G0017355.1 mouse_genomes_project 10 73797902 73800783 - Prmt2 protein_coding retained_intron MGP_AJ_T0025797.1 MGP_AJ_G0017355.1 mouse_genomes_project 10 73797928 73801469 - Prmt2 protein_coding processed_transcript MGP_AJ_T0025999.1 MGP_AJ_G0017421.1 mouse_genomes_project 10 77217041 77242472 + MGP_AJ_P0025999 Vmn2r83 protein_coding protein_coding MGP_AJ_T0024859.1 MGP_AJ_G0017091.1 mouse_genomes_project 10 26794874 26878420 - MGP_AJ_P0024859 Rspo3 protein_coding protein_coding MGP_AJ_T0012439.1 MGP_AJ_G0010534.1 mouse_genomes_project 10 94586133 94586322 - processed_pseudogene processed_pseudogene MGP_AJ_T0026224.1 MGP_AJ_G0017474.1 mouse_genomes_project 10 78087643 78095770 - Pcsk4 protein_coding retained_intron MGP_AJ_T0026225.1 MGP_AJ_G0017474.1 mouse_genomes_project 10 78087643 78095772 - MGP_AJ_P0026225 Pcsk4 protein_coding nonsense_mediated_decay MGP_AJ_T0026226.1 MGP_AJ_G0017474.1 mouse_genomes_project 10 78087643 78095815 - MGP_AJ_P0026226 Pcsk4 protein_coding protein_coding MGP_AJ_T0026227.1 MGP_AJ_G0017474.1 mouse_genomes_project 10 78087647 78089488 - Pcsk4 protein_coding retained_intron MGP_AJ_T0026228.1 MGP_AJ_G0017474.1 mouse_genomes_project 10 78087647 78089487 - Pcsk4 protein_coding retained_intron MGP_AJ_T0026229.1 MGP_AJ_G0017474.1 mouse_genomes_project 10 78088482 78095716 - MGP_AJ_P0026229 Pcsk4 protein_coding nonsense_mediated_decay MGP_AJ_T0026640.1 MGP_AJ_G0017584.1 mouse_genomes_project 10 83972884 83974901 + MGP_AJ_P0026640 Ascl4 protein_coding protein_coding MGP_AJ_T0026641.1 MGP_AJ_G0017584.1 mouse_genomes_project 10 83973977 83996726 + MGP_AJ_P0026641 Ascl4 protein_coding nonsense_mediated_decay MGP_AJ_T0026328.1 MGP_AJ_G0017506.1 mouse_genomes_project 10 78694530 78711349 - MGP_AJ_P0026328 Lmnb2 protein_coding protein_coding MGP_AJ_T0026329.1 MGP_AJ_G0017506.1 mouse_genomes_project 10 78694685 78711322 - MGP_AJ_P0026329 Lmnb2 protein_coding protein_coding MGP_AJ_T0026330.1 MGP_AJ_G0017506.1 mouse_genomes_project 10 78696125 78699740 - MGP_AJ_P0026330 Lmnb2 protein_coding protein_coding MGP_AJ_T0026331.1 MGP_AJ_G0017506.1 mouse_genomes_project 10 78703018 78710955 - Lmnb2 protein_coding processed_transcript MGP_AJ_T0009587.1 MGP_AJ_G0007709.1 mouse_genomes_project 10 58418367 58418458 + Mir6408 miRNA miRNA MGP_AJ_T0024870.1 MGP_AJ_G0017098.1 mouse_genomes_project 10 28680850 28695662 + MGP_AJ_P0024870 Hddc2 protein_coding protein_coding MGP_AJ_T0024871.1 MGP_AJ_G0017098.1 mouse_genomes_project 10 28680873 28684501 + Hddc2 protein_coding retained_intron MGP_AJ_T0024872.1 MGP_AJ_G0017098.1 mouse_genomes_project 10 28680875 28685312 + Hddc2 protein_coding retained_intron MGP_AJ_T0024873.1 MGP_AJ_G0017098.1 mouse_genomes_project 10 28680940 28695642 + MGP_AJ_P0024873 Hddc2 protein_coding nonsense_mediated_decay MGP_AJ_T0024874.1 MGP_AJ_G0017098.1 mouse_genomes_project 10 28687625 28695660 + Hddc2 protein_coding retained_intron MGP_AJ_T0027326.1 MGP_AJ_G0017797.1 mouse_genomes_project 10 125735838 125811455 + MGP_AJ_P0027326 R3hdm2 protein_coding protein_coding MGP_AJ_T0027327.1 MGP_AJ_G0017797.1 mouse_genomes_project 10 125736189 125867715 + MGP_AJ_P0027327 R3hdm2 protein_coding protein_coding MGP_AJ_T0027328.1 MGP_AJ_G0017797.1 mouse_genomes_project 10 125745680 125867738 + MGP_AJ_P0027328 R3hdm2 protein_coding protein_coding MGP_AJ_T0027329.1 MGP_AJ_G0017797.1 mouse_genomes_project 10 125745680 125867738 + MGP_AJ_P0027329 R3hdm2 protein_coding protein_coding MGP_AJ_T0027330.1 MGP_AJ_G0017797.1 mouse_genomes_project 10 125787087 125818777 + MGP_AJ_P0027330 R3hdm2 protein_coding protein_coding MGP_AJ_T0027331.1 MGP_AJ_G0017797.1 mouse_genomes_project 10 125787616 125867704 + MGP_AJ_P0027331 R3hdm2 protein_coding protein_coding MGP_AJ_T0027332.1 MGP_AJ_G0017797.1 mouse_genomes_project 10 125787873 125867386 + MGP_AJ_P0027332 R3hdm2 protein_coding protein_coding MGP_AJ_T0027333.1 MGP_AJ_G0017797.1 mouse_genomes_project 10 125787981 125819530 + MGP_AJ_P0027333 R3hdm2 protein_coding protein_coding MGP_AJ_T0027334.1 MGP_AJ_G0017797.1 mouse_genomes_project 10 125811374 125867064 + MGP_AJ_P0027334 R3hdm2 protein_coding protein_coding MGP_AJ_T0027335.1 MGP_AJ_G0017797.1 mouse_genomes_project 10 125811374 125867739 + MGP_AJ_P0027335 R3hdm2 protein_coding protein_coding MGP_AJ_T0027336.1 MGP_AJ_G0017797.1 mouse_genomes_project 10 125811374 125867722 + MGP_AJ_P0027336 R3hdm2 protein_coding protein_coding MGP_AJ_T0027337.1 MGP_AJ_G0017797.1 mouse_genomes_project 10 125811374 125867064 + MGP_AJ_P0027337 R3hdm2 protein_coding nonsense_mediated_decay MGP_AJ_T0027338.1 MGP_AJ_G0017797.1 mouse_genomes_project 10 125826135 125831853 + MGP_AJ_P0027338 R3hdm2 protein_coding protein_coding MGP_AJ_T0027339.1 MGP_AJ_G0017797.1 mouse_genomes_project 10 125826161 125831983 + R3hdm2 protein_coding retained_intron MGP_AJ_T0027340.1 MGP_AJ_G0017797.1 mouse_genomes_project 10 125826165 125867738 + MGP_AJ_P0027340 R3hdm2 protein_coding protein_coding MGP_AJ_T0027341.1 MGP_AJ_G0017797.1 mouse_genomes_project 10 125826205 125851100 + R3hdm2 protein_coding processed_transcript MGP_AJ_T0027342.1 MGP_AJ_G0017797.1 mouse_genomes_project 10 125848263 125851491 + R3hdm2 protein_coding retained_intron MGP_AJ_T0027343.1 MGP_AJ_G0017797.1 mouse_genomes_project 10 125852237 125860520 + R3hdm2 protein_coding retained_intron MGP_AJ_T0027344.1 MGP_AJ_G0017797.1 mouse_genomes_project 10 125852428 125863500 + MGP_AJ_P0027344 R3hdm2 protein_coding protein_coding MGP_AJ_T0027345.1 MGP_AJ_G0017797.1 mouse_genomes_project 10 125860452 125867722 + MGP_AJ_P0027345 R3hdm2 protein_coding protein_coding MGP_AJ_T0025829.1 MGP_AJ_G0017366.1 mouse_genomes_project 10 74305550 74323156 - MGP_AJ_P0025829 Col6a1 protein_coding unknown_likely_coding MGP_AJ_T0025830.1 MGP_AJ_G0017366.1 mouse_genomes_project 10 74305558 74323411 - MGP_AJ_P0025830 Col6a1 protein_coding protein_coding MGP_AJ_T0025831.1 MGP_AJ_G0017366.1 mouse_genomes_project 10 74311782 74316010 - Col6a1 protein_coding retained_intron MGP_AJ_T0026273.1 MGP_AJ_G0017484.1 mouse_genomes_project 10 78326794 78331744 - Rexo1 protein_coding retained_intron MGP_AJ_T0026274.1 MGP_AJ_G0017484.1 mouse_genomes_project 10 78326797 78347434 - MGP_AJ_P0026274 Rexo1 protein_coding protein_coding MGP_AJ_T0026275.1 MGP_AJ_G0017484.1 mouse_genomes_project 10 78327536 78333829 - MGP_AJ_P0026275 Rexo1 protein_coding protein_coding MGP_AJ_T0026276.1 MGP_AJ_G0017484.1 mouse_genomes_project 10 78328145 78332710 - Rexo1 protein_coding retained_intron MGP_AJ_T0026277.1 MGP_AJ_G0017484.1 mouse_genomes_project 10 78328145 78332378 - Rexo1 protein_coding retained_intron MGP_AJ_T0026278.1 MGP_AJ_G0017484.1 mouse_genomes_project 10 78328488 78330186 - MGP_AJ_P0026278 Rexo1 protein_coding nonsense_mediated_decay MGP_AJ_T0026279.1 MGP_AJ_G0017484.1 mouse_genomes_project 10 78331904 78335370 - MGP_AJ_P0026279 Rexo1 protein_coding nonsense_mediated_decay MGP_AJ_T0026280.1 MGP_AJ_G0017484.1 mouse_genomes_project 10 78333234 78335368 - Rexo1 protein_coding processed_transcript MGP_AJ_T0012383.1 MGP_AJ_G0010478.1 mouse_genomes_project 10 909162 909727 + processed_pseudogene processed_pseudogene MGP_AJ_T0025799.1 MGP_AJ_G0017357.1 mouse_genomes_project 10 73849196 73855941 - MGP_AJ_P0025799 Dip2a protein_coding nonsense_mediated_decay MGP_AJ_T0025800.1 MGP_AJ_G0017357.1 mouse_genomes_project 10 73853168 73934911 - MGP_AJ_P0025800 Dip2a protein_coding protein_coding MGP_AJ_T0025801.1 MGP_AJ_G0017357.1 mouse_genomes_project 10 73853466 73876969 - Dip2a protein_coding retained_intron MGP_AJ_T0025802.1 MGP_AJ_G0017357.1 mouse_genomes_project 10 73853483 73934911 - MGP_AJ_P0025802 Dip2a protein_coding protein_coding MGP_AJ_T0025803.1 MGP_AJ_G0017357.1 mouse_genomes_project 10 73853483 73934880 - MGP_AJ_P0025803 Dip2a protein_coding protein_coding MGP_AJ_T0025804.1 MGP_AJ_G0017357.1 mouse_genomes_project 10 73855104 73861004 - Dip2a protein_coding retained_intron MGP_AJ_T0025805.1 MGP_AJ_G0017357.1 mouse_genomes_project 10 73873718 73883571 - MGP_AJ_P0025805 Dip2a protein_coding nonsense_mediated_decay MGP_AJ_T0025806.1 MGP_AJ_G0017357.1 mouse_genomes_project 10 73886388 73934852 - Dip2a protein_coding retained_intron MGP_AJ_T0006107.1 MGP_AJ_G0005109.1 mouse_genomes_project 10 64141348 64142293 + Gm28139 lincRNA lincRNA MGP_AJ_T0024387.1 MGP_AJ_G0016957.1 mouse_genomes_project 10 1355598 1374244 + MGP_AJ_P0024387 Armt1 protein_coding protein_coding MGP_AJ_T0024388.1 MGP_AJ_G0016957.1 mouse_genomes_project 10 1355768 1363201 + MGP_AJ_P0024388 Armt1 protein_coding protein_coding MGP_AJ_T0024389.1 MGP_AJ_G0016957.1 mouse_genomes_project 10 1355775 1370331 + Armt1 protein_coding processed_transcript MGP_AJ_T0024390.1 MGP_AJ_G0016957.1 mouse_genomes_project 10 1355783 1358248 + Armt1 protein_coding retained_intron MGP_AJ_T0024391.1 MGP_AJ_G0016957.1 mouse_genomes_project 10 1355788 1373966 + MGP_AJ_P0024391 Armt1 protein_coding nonsense_mediated_decay MGP_AJ_T0024392.1 MGP_AJ_G0016957.1 mouse_genomes_project 10 1357654 1363756 + Armt1 protein_coding processed_transcript MGP_AJ_T0025395.1 MGP_AJ_G0017273.1 mouse_genomes_project 10 59805356 59877204 - MGP_AJ_P0025395 Hk1 protein_coding protein_coding MGP_AJ_T0025396.1 MGP_AJ_G0017273.1 mouse_genomes_project 10 59805605 59916292 - MGP_AJ_P0025396 Hk1 protein_coding protein_coding MGP_AJ_T0025397.1 MGP_AJ_G0017273.1 mouse_genomes_project 10 59805609 59895355 - MGP_AJ_P0025397 Hk1 protein_coding protein_coding MGP_AJ_T0025398.1 MGP_AJ_G0017273.1 mouse_genomes_project 10 59806410 59879384 - MGP_AJ_P0025398 Hk1 protein_coding protein_coding MGP_AJ_T0025399.1 MGP_AJ_G0017273.1 mouse_genomes_project 10 59820977 59827462 - Hk1 protein_coding retained_intron MGP_AJ_T0025400.1 MGP_AJ_G0017273.1 mouse_genomes_project 10 59832987 59855247 - MGP_AJ_P0025400 Hk1 protein_coding protein_coding MGP_AJ_T0025401.1 MGP_AJ_G0017273.1 mouse_genomes_project 10 59833220 59864464 - MGP_AJ_P0025401 Hk1 protein_coding protein_coding MGP_AJ_T0025402.1 MGP_AJ_G0017273.1 mouse_genomes_project 10 59833835 59879361 - MGP_AJ_P0025402 Hk1 protein_coding protein_coding MGP_AJ_T0025403.1 MGP_AJ_G0017273.1 mouse_genomes_project 10 59834080 59879370 - Hk1 protein_coding retained_intron MGP_AJ_T0025404.1 MGP_AJ_G0017273.1 mouse_genomes_project 10 59852329 59916236 - MGP_AJ_P0025404 Hk1 protein_coding protein_coding MGP_AJ_T0025405.1 MGP_AJ_G0017273.1 mouse_genomes_project 10 59852329 59911484 - MGP_AJ_P0025405 Hk1 protein_coding protein_coding MGP_AJ_T0025406.1 MGP_AJ_G0017273.1 mouse_genomes_project 10 59852329 59916236 - MGP_AJ_P0025406 Hk1 protein_coding protein_coding MGP_AJ_T0025407.1 MGP_AJ_G0017273.1 mouse_genomes_project 10 59852329 59911484 - MGP_AJ_P0025407 Hk1 protein_coding protein_coding MGP_AJ_T0025408.1 MGP_AJ_G0017273.1 mouse_genomes_project 10 59852329 59911484 - MGP_AJ_P0025408 Hk1 protein_coding protein_coding MGP_AJ_T0025409.1 MGP_AJ_G0017273.1 mouse_genomes_project 10 59852329 59911484 - MGP_AJ_P0025409 Hk1 protein_coding protein_coding MGP_AJ_T0025410.1 MGP_AJ_G0017273.1 mouse_genomes_project 10 59852329 59911484 - MGP_AJ_P0025410 Hk1 protein_coding protein_coding MGP_AJ_T0025411.1 MGP_AJ_G0017273.1 mouse_genomes_project 10 59852329 59911484 - MGP_AJ_P0025411 Hk1 protein_coding protein_coding MGP_AJ_T0025412.1 MGP_AJ_G0017273.1 mouse_genomes_project 10 59852329 59916236 - MGP_AJ_P0025412 Hk1 protein_coding protein_coding MGP_AJ_T0025413.1 MGP_AJ_G0017273.1 mouse_genomes_project 10 59852329 59911484 - MGP_AJ_P0025413 Hk1 protein_coding protein_coding MGP_AJ_T0025414.1 MGP_AJ_G0017273.1 mouse_genomes_project 10 59852374 59899267 - MGP_AJ_P0025414 Hk1 protein_coding protein_coding MGP_AJ_T0098521.1 MGP_AJ_G0036505.1 mouse_genomes_project 10 849312 849421 - Gm23023 rRNA rRNA MGP_AJ_T0026290.1 MGP_AJ_G0017489.1 mouse_genomes_project 10 78411687 78429679 + MGP_AJ_P0026290 Csnk1g2 protein_coding protein_coding MGP_AJ_T0026291.1 MGP_AJ_G0017489.1 mouse_genomes_project 10 78418563 78429679 + MGP_AJ_P0026291 Csnk1g2 protein_coding protein_coding MGP_AJ_T0003049.1 MGP_AJ_G0002847.1 mouse_genomes_project 10 73979465 73991923 + 1700094J05Rik antisense antisense MGP_AJ_T0003050.1 MGP_AJ_G0002847.1 mouse_genomes_project 10 73989042 73989410 + 1700094J05Rik antisense antisense MGP_AJ_T0024678.1 MGP_AJ_G0017028.1 mouse_genomes_project 10 16916278 16963991 - MGP_AJ_P0024678 Pex7 protein_coding protein_coding MGP_AJ_T0024679.1 MGP_AJ_G0017028.1 mouse_genomes_project 10 16916446 16963976 - MGP_AJ_P0024679 Pex7 protein_coding protein_coding MGP_AJ_T0024680.1 MGP_AJ_G0017028.1 mouse_genomes_project 10 16917138 16926019 - Pex7 protein_coding retained_intron MGP_AJ_T0024681.1 MGP_AJ_G0017028.1 mouse_genomes_project 10 16941082 16963847 - MGP_AJ_P0024681 Pex7 protein_coding protein_coding MGP_AJ_T0026662.1 MGP_AJ_G0017590.1 mouse_genomes_project 10 84722987 84724932 + MGP_AJ_P0026662 Gm6729 protein_coding protein_coding MGP_AJ_T0026960.1 MGP_AJ_G0017670.1 mouse_genomes_project 10 98640305 98721950 + MGP_AJ_P0026960 Cep290 protein_coding unknown_likely_coding MGP_AJ_T0026961.1 MGP_AJ_G0017670.1 mouse_genomes_project 10 98640957 98723442 + MGP_AJ_P0026961 Cep290 protein_coding protein_coding MGP_AJ_T0000834.1 MGP_AJ_G0000769.1 mouse_genomes_project 10 118580317 118582813 + TEC TEC MGP_AJ_T0027561.1 MGP_AJ_G0017885.1 mouse_genomes_project 10 128010546 128011616 + MGP_AJ_P0027561 Olfr790 protein_coding protein_coding MGP_AJ_T0027346.1 MGP_AJ_G0017798.1 mouse_genomes_project 10 125870031 125877181 + MGP_AJ_P0027346 Stac3 protein_coding protein_coding MGP_AJ_T0027347.1 MGP_AJ_G0017798.1 mouse_genomes_project 10 125870039 125871184 + MGP_AJ_P0027347 Stac3 protein_coding protein_coding MGP_AJ_T0027348.1 MGP_AJ_G0017798.1 mouse_genomes_project 10 125870062 125877173 + MGP_AJ_P0027348 Stac3 protein_coding protein_coding MGP_AJ_T0027349.1 MGP_AJ_G0017798.1 mouse_genomes_project 10 125872836 125875846 + Stac3 protein_coding retained_intron MGP_AJ_T0027350.1 MGP_AJ_G0017798.1 mouse_genomes_project 10 125875572 125876350 + Stac3 protein_coding retained_intron MGP_AJ_T0025112.1 MGP_AJ_G0017180.1 mouse_genomes_project 10 41891691 41992976 + MGP_AJ_P0025112 Atg5 protein_coding protein_coding MGP_AJ_T0027508.1 MGP_AJ_G0017853.1 mouse_genomes_project 10 127147771 127154891 - MGP_AJ_P0027508 Cdk2 protein_coding protein_coding MGP_AJ_T0027509.1 MGP_AJ_G0017853.1 mouse_genomes_project 10 127147771 127154891 - MGP_AJ_P0027509 Cdk2 protein_coding protein_coding MGP_AJ_T0000822.1 MGP_AJ_G0000758.1 mouse_genomes_project 10 85362211 85364560 + TEC TEC MGP_AJ_T0000823.1 MGP_AJ_G0000758.1 mouse_genomes_project 10 85363456 85363834 + TEC TEC MGP_AJ_T0025067.1 MGP_AJ_G0017164.1 mouse_genomes_project 10 40142000 40142910 + Ostm1 protein_coding processed_transcript MGP_AJ_T0025068.1 MGP_AJ_G0017164.1 mouse_genomes_project 10 40142013 40262896 + MGP_AJ_P0025068 Ostm1 protein_coding protein_coding MGP_AJ_T0025069.1 MGP_AJ_G0017164.1 mouse_genomes_project 10 40142016 40265065 + MGP_AJ_P0025069 Ostm1 protein_coding protein_coding MGP_AJ_T0025070.1 MGP_AJ_G0017164.1 mouse_genomes_project 10 40242728 40267032 + MGP_AJ_P0025070 Ostm1 protein_coding protein_coding MGP_AJ_T0025071.1 MGP_AJ_G0017164.1 mouse_genomes_project 10 40242778 40264564 + Ostm1 protein_coding retained_intron MGP_AJ_T0009637.1 MGP_AJ_G0007759.1 mouse_genomes_project 10 125050039 125050149 - Mir378d miRNA miRNA MGP_AJ_T0026135.1 MGP_AJ_G0017458.1 mouse_genomes_project 10 77806158 77816517 + Gpx4 protein_coding processed_transcript MGP_AJ_T0026136.1 MGP_AJ_G0017458.1 mouse_genomes_project 10 77812447 77816517 + MGP_AJ_P0026136 Gpx4 protein_coding protein_coding MGP_AJ_T0026137.1 MGP_AJ_G0017458.1 mouse_genomes_project 10 77812994 77814067 + Gpx4 protein_coding processed_transcript MGP_AJ_T0026138.1 MGP_AJ_G0017458.1 mouse_genomes_project 10 77812996 77816517 + MGP_AJ_P0026138 Gpx4 protein_coding protein_coding MGP_AJ_T0026139.1 MGP_AJ_G0017458.1 mouse_genomes_project 10 77813424 77816472 + MGP_AJ_P0026139 Gpx4 protein_coding protein_coding MGP_AJ_T0026140.1 MGP_AJ_G0017458.1 mouse_genomes_project 10 77815971 77816443 + Gpx4 protein_coding retained_intron MGP_AJ_T0026141.1 MGP_AJ_G0017458.1 mouse_genomes_project 10 77816075 77816441 + Gpx4 protein_coding retained_intron MGP_AJ_T0025484.1 MGP_AJ_G0017291.1 mouse_genomes_project 10 60665929 60756309 - MGP_AJ_P0025484 Mypn protein_coding protein_coding MGP_AJ_T0099304.1 MGP_AJ_G0037270.1 mouse_genomes_project 10 126722304 126722410 - Gm23241 snRNA snRNA MGP_AJ_T0025296.1 MGP_AJ_G0017245.1 mouse_genomes_project 10 57759065 57783998 + MGP_AJ_P0025296 Psap protein_coding protein_coding MGP_AJ_T0025297.1 MGP_AJ_G0017245.1 mouse_genomes_project 10 57759066 57784001 + MGP_AJ_P0025297 Psap protein_coding protein_coding MGP_AJ_T0025298.1 MGP_AJ_G0017245.1 mouse_genomes_project 10 57759066 57784001 + MGP_AJ_P0025298 Psap protein_coding protein_coding MGP_AJ_T0025299.1 MGP_AJ_G0017245.1 mouse_genomes_project 10 57759066 57784001 + MGP_AJ_P0025299 Psap protein_coding protein_coding MGP_AJ_T0025300.1 MGP_AJ_G0017245.1 mouse_genomes_project 10 57765879 57784001 + MGP_AJ_P0025300 Psap protein_coding protein_coding MGP_AJ_T0024710.1 MGP_AJ_G0017035.1 mouse_genomes_project 10 18010483 18141414 + MGP_AJ_P0024710 Ahi1 protein_coding protein_coding MGP_AJ_T0024711.1 MGP_AJ_G0017035.1 mouse_genomes_project 10 18100379 18141414 + MGP_AJ_P0024711 Ahi1 protein_coding protein_coding MGP_AJ_T0025381.1 MGP_AJ_G0017269.1 mouse_genomes_project 10 59639612 59643008 - MGP_AJ_P0025381 2010107G23Rik protein_coding protein_coding MGP_AJ_T0025382.1 MGP_AJ_G0017269.1 mouse_genomes_project 10 59640167 59642903 - MGP_AJ_P0025382 2010107G23Rik protein_coding protein_coding MGP_AJ_T0025383.1 MGP_AJ_G0017269.1 mouse_genomes_project 10 59640167 59642926 - MGP_AJ_P0025383 2010107G23Rik protein_coding protein_coding MGP_AJ_T0025384.1 MGP_AJ_G0017269.1 mouse_genomes_project 10 59640167 59643008 - MGP_AJ_P0025384 2010107G23Rik protein_coding protein_coding MGP_AJ_T0025385.1 MGP_AJ_G0017269.1 mouse_genomes_project 10 59640169 59642971 - MGP_AJ_P0025385 2010107G23Rik protein_coding protein_coding MGP_AJ_T0025386.1 MGP_AJ_G0017269.1 mouse_genomes_project 10 59640792 59673239 - MGP_AJ_P0025386 2010107G23Rik protein_coding protein_coding MGP_AJ_T0025387.1 MGP_AJ_G0017269.1 mouse_genomes_project 10 59640874 59668063 - MGP_AJ_P0025387 2010107G23Rik protein_coding protein_coding MGP_AJ_T0025388.1 MGP_AJ_G0017269.1 mouse_genomes_project 10 59640875 59676701 - MGP_AJ_P0025388 2010107G23Rik protein_coding protein_coding MGP_AJ_T0025389.1 MGP_AJ_G0017269.1 mouse_genomes_project 10 59640877 59642454 - MGP_AJ_P0025389 2010107G23Rik protein_coding protein_coding MGP_AJ_T0025390.1 MGP_AJ_G0017269.1 mouse_genomes_project 10 59641904 59676705 - MGP_AJ_P0025390 2010107G23Rik protein_coding protein_coding MGP_AJ_T0025392.1 MGP_AJ_G0017269.1 mouse_genomes_project 10 59667877 59676715 - 2010107G23Rik protein_coding processed_transcript MGP_AJ_T0102216.1 MGP_AJ_G0039959.1 mouse_genomes_project 10 127533778 127534708 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0012442.1 MGP_AJ_G0010537.1 mouse_genomes_project 10 101781159 101783161 - processed_pseudogene processed_pseudogene MGP_AJ_T0100535.1 MGP_AJ_G0038501.1 mouse_genomes_project 10 75612819 75612873 - Gm22871 snoRNA snoRNA MGP_AJ_T0006095.1 MGP_AJ_G0005101.1 mouse_genomes_project 10 55178953 55186922 - 4930467K11Rik lincRNA lincRNA MGP_AJ_T0027316.1 MGP_AJ_G0017792.1 mouse_genomes_project 10 125641579 125657031 - MGP_AJ_P0027316 Mars protein_coding protein_coding MGP_AJ_T0027317.1 MGP_AJ_G0017792.1 mouse_genomes_project 10 125641580 125657031 - MGP_AJ_P0027317 Mars protein_coding protein_coding MGP_AJ_T0027318.1 MGP_AJ_G0017792.1 mouse_genomes_project 10 125641584 125656923 - Mars protein_coding retained_intron MGP_AJ_T0027319.1 MGP_AJ_G0017792.1 mouse_genomes_project 10 125641584 125643123 - MGP_AJ_P0027319 Mars protein_coding protein_coding MGP_AJ_T0027320.1 MGP_AJ_G0017792.1 mouse_genomes_project 10 125641707 125643034 - Mars protein_coding retained_intron MGP_AJ_T0027321.1 MGP_AJ_G0017792.1 mouse_genomes_project 10 125653301 125654239 - Mars protein_coding retained_intron MGP_AJ_T0012384.1 MGP_AJ_G0010479.1 mouse_genomes_project 10 1289794 1291061 - processed_pseudogene processed_pseudogene MGP_AJ_T0000813.1 MGP_AJ_G0000749.1 mouse_genomes_project 10 24943853 24945614 - TEC TEC MGP_AJ_T0025984.1 MGP_AJ_G0017410.1 mouse_genomes_project 10 76565889 76662257 + MGP_AJ_P0025984 protein_coding protein_coding MGP_AJ_T0012415.1 MGP_AJ_G0010510.1 mouse_genomes_project 10 49755296 49755847 - processed_pseudogene processed_pseudogene MGP_AJ_T0100540.1 MGP_AJ_G0038506.1 mouse_genomes_project 10 94067067 94067200 + Gm24433 snoRNA snoRNA MGP_AJ_T0003093.1 MGP_AJ_G0002878.1 mouse_genomes_project 10 117684712 117710625 - Grip1os3 antisense antisense MGP_AJ_T0003094.1 MGP_AJ_G0002878.1 mouse_genomes_project 10 117694582 117710575 - Grip1os3 antisense antisense MGP_AJ_T0003095.1 MGP_AJ_G0002878.1 mouse_genomes_project 10 117694582 117711174 - Grip1os3 antisense antisense MGP_AJ_T0000826.1 MGP_AJ_G0000761.1 mouse_genomes_project 10 103247095 103247804 - TEC TEC MGP_AJ_T0024724.1 MGP_AJ_G0017041.1 mouse_genomes_project 10 18951755 19070750 + MGP_AJ_P0024724 Sgk1 protein_coding protein_coding MGP_AJ_T0024725.1 MGP_AJ_G0017041.1 mouse_genomes_project 10 18951940 18968677 + Sgk1 protein_coding processed_transcript MGP_AJ_T0024726.1 MGP_AJ_G0017041.1 mouse_genomes_project 10 18999917 19061503 + MGP_AJ_P0024726 Sgk1 protein_coding protein_coding MGP_AJ_T0024727.1 MGP_AJ_G0017041.1 mouse_genomes_project 10 19050004 19066750 + MGP_AJ_P0024727 Sgk1 protein_coding protein_coding MGP_AJ_T0024728.1 MGP_AJ_G0017041.1 mouse_genomes_project 10 19063321 19066731 + MGP_AJ_P0024728 Sgk1 protein_coding protein_coding MGP_AJ_T0024729.1 MGP_AJ_G0017041.1 mouse_genomes_project 10 19063321 19070755 + MGP_AJ_P0024729 Sgk1 protein_coding protein_coding MGP_AJ_T0024730.1 MGP_AJ_G0017041.1 mouse_genomes_project 10 19064751 19070748 + MGP_AJ_P0024730 Sgk1 protein_coding protein_coding MGP_AJ_T0024731.1 MGP_AJ_G0017041.1 mouse_genomes_project 10 19065544 19066458 + Sgk1 protein_coding retained_intron MGP_AJ_T0024732.1 MGP_AJ_G0017041.1 mouse_genomes_project 10 19065546 19070759 + MGP_AJ_P0024732 Sgk1 protein_coding protein_coding MGP_AJ_T0024733.1 MGP_AJ_G0017041.1 mouse_genomes_project 10 19065572 19067198 + Sgk1 protein_coding retained_intron MGP_AJ_T0024734.1 MGP_AJ_G0017041.1 mouse_genomes_project 10 19065771 19068293 + MGP_AJ_P0024734 Sgk1 protein_coding protein_coding MGP_AJ_T0024735.1 MGP_AJ_G0017041.1 mouse_genomes_project 10 19067447 19069097 + Sgk1 protein_coding retained_intron MGP_AJ_T0024537.1 MGP_AJ_G0016990.1 mouse_genomes_project 10 8132087 8170554 + MGP_AJ_P0024537 Shprh protein_coding nonsense_mediated_decay MGP_AJ_T0024538.1 MGP_AJ_G0016990.1 mouse_genomes_project 10 8132090 8202158 + MGP_AJ_P0024538 Shprh protein_coding protein_coding MGP_AJ_T0024539.1 MGP_AJ_G0016990.1 mouse_genomes_project 10 8132133 8137187 + Shprh protein_coding retained_intron MGP_AJ_T0024540.1 MGP_AJ_G0016990.1 mouse_genomes_project 10 8132184 8193316 + MGP_AJ_P0024540 Shprh protein_coding protein_coding MGP_AJ_T0024541.1 MGP_AJ_G0016990.1 mouse_genomes_project 10 8132184 8193316 + MGP_AJ_P0024541 Shprh protein_coding protein_coding MGP_AJ_T0024542.1 MGP_AJ_G0016990.1 mouse_genomes_project 10 8146834 8152553 + MGP_AJ_P0024542 Shprh protein_coding nonsense_mediated_decay MGP_AJ_T0024543.1 MGP_AJ_G0016990.1 mouse_genomes_project 10 8148946 8198860 + Shprh protein_coding retained_intron MGP_AJ_T0024544.1 MGP_AJ_G0016990.1 mouse_genomes_project 10 8188787 8193375 + Shprh protein_coding retained_intron MGP_AJ_T0100521.1 MGP_AJ_G0038487.1 mouse_genomes_project 10 42914671 42914800 - Gm26016 snoRNA snoRNA MGP_AJ_T0025903.1 MGP_AJ_G0017383.1 mouse_genomes_project 10 75350991 75351354 + MGP_AJ_P0025903 Gm10100 protein_coding protein_coding MGP_AJ_T0027303.1 MGP_AJ_G0017787.1 mouse_genomes_project 10 125542242 125556729 - MGP_AJ_P0027303 Pip4k2c protein_coding protein_coding MGP_AJ_T0099276.1 MGP_AJ_G0037242.1 mouse_genomes_project 10 77664280 77664387 + Gm24019 snRNA snRNA MGP_AJ_T0025238.1 MGP_AJ_G0017227.1 mouse_genomes_project 10 56143952 56144237 + MGP_AJ_P0025238 BB019430 protein_coding protein_coding MGP_AJ_T0024939.1 MGP_AJ_G0017126.1 mouse_genomes_project 10 36631060 36648116 + MGP_AJ_P0024939 Tube1 protein_coding protein_coding MGP_AJ_T0099241.1 MGP_AJ_G0037207.1 mouse_genomes_project 10 1405070 1405230 + Gm22739 snRNA snRNA MGP_AJ_T0026383.1 MGP_AJ_G0017522.1 mouse_genomes_project 10 79036242 79055153 + MGP_AJ_P0026383 Zfr2 protein_coding protein_coding MGP_AJ_T0026384.1 MGP_AJ_G0017522.1 mouse_genomes_project 10 79036242 79040641 + MGP_AJ_P0026384 Zfr2 protein_coding protein_coding MGP_AJ_T0026385.1 MGP_AJ_G0017522.1 mouse_genomes_project 10 79036263 79040665 + Zfr2 protein_coding processed_transcript MGP_AJ_T0026386.1 MGP_AJ_G0017522.1 mouse_genomes_project 10 79036263 79045452 + Zfr2 protein_coding retained_intron MGP_AJ_T0026387.1 MGP_AJ_G0017522.1 mouse_genomes_project 10 79036274 79055151 + Zfr2 protein_coding retained_intron MGP_AJ_T0026388.1 MGP_AJ_G0017522.1 mouse_genomes_project 10 79051445 79054742 + MGP_AJ_P0026388 Zfr2 protein_coding protein_coding MGP_AJ_T0026389.1 MGP_AJ_G0017522.1 mouse_genomes_project 10 79052080 79053576 + Zfr2 protein_coding retained_intron MGP_AJ_T0026535.1 MGP_AJ_G0017551.1 mouse_genomes_project 10 79998801 80023292 + MGP_AJ_P0026535 AU041133 protein_coding protein_coding MGP_AJ_T0026536.1 MGP_AJ_G0017551.1 mouse_genomes_project 10 80009049 80022238 + MGP_AJ_P0026536 AU041133 protein_coding protein_coding MGP_AJ_T0025121.1 MGP_AJ_G0017184.1 mouse_genomes_project 10 42983210 43018191 + MGP_AJ_P0025121 Bves protein_coding protein_coding MGP_AJ_T0025246.1 MGP_AJ_G0017231.1 mouse_genomes_project 10 56669268 56673750 + MGP_AJ_P0025246 Sowahc protein_coding protein_coding MGP_AJ_T0009593.1 MGP_AJ_G0007715.1 mouse_genomes_project 10 73593925 73594017 + Mir6409 miRNA miRNA MGP_AJ_T0027015.1 MGP_AJ_G0017686.1 mouse_genomes_project 10 105579311 105581146 - MGP_AJ_P0027015 Myf6 protein_coding protein_coding MGP_AJ_T0025956.1 MGP_AJ_G0017395.1 mouse_genomes_project 10 75861816 75869516 - MGP_AJ_P0025956 D10Jhu81e protein_coding protein_coding MGP_AJ_T0009646.1 MGP_AJ_G0007768.1 mouse_genomes_project 10 126945047 126945110 - Mir6916 miRNA miRNA MGP_AJ_T0000812.1 MGP_AJ_G0000748.1 mouse_genomes_project 10 19129090 19131161 - TEC TEC MGP_AJ_T0025155.1 MGP_AJ_G0017197.1 mouse_genomes_project 10 49690584 49833834 - MGP_AJ_P0025155 Ros1 protein_coding nonsense_mediated_decay MGP_AJ_T0025156.1 MGP_AJ_G0017197.1 mouse_genomes_project 10 49690789 49834122 - MGP_AJ_P0025156 Ros1 protein_coding protein_coding MGP_AJ_T0025157.1 MGP_AJ_G0017197.1 mouse_genomes_project 10 49690879 49833834 - MGP_AJ_P0025157 Ros1 protein_coding protein_coding MGP_AJ_T0025158.1 MGP_AJ_G0017197.1 mouse_genomes_project 10 49690879 49833834 - MGP_AJ_P0025158 Ros1 protein_coding nonsense_mediated_decay MGP_AJ_T0009573.1 MGP_AJ_G0007695.1 mouse_genomes_project 10 17351026 17351134 - Mir6413 miRNA miRNA MGP_AJ_T0100539.1 MGP_AJ_G0038505.1 mouse_genomes_project 10 92029946 92030114 - Gm25962 snoRNA snoRNA MGP_AJ_T0006124.1 MGP_AJ_G0005123.1 mouse_genomes_project 10 83859222 84775947 + lincRNA lincRNA MGP_AJ_T0100525.1 MGP_AJ_G0038491.1 mouse_genomes_project 10 56144533 56144609 - Gm25055 snoRNA snoRNA MGP_AJ_T0012397.1 MGP_AJ_G0010492.1 mouse_genomes_project 10 21886740 21887402 - processed_pseudogene processed_pseudogene MGP_AJ_T0024375.1 MGP_AJ_G0016954.1 mouse_genomes_project 10 1184577 1280055 + MGP_AJ_P0024375 Akap12 protein_coding protein_coding MGP_AJ_T0026380.1 MGP_AJ_G0017521.1 mouse_genomes_project 10 79004892 79033931 - MGP_AJ_P0026380 Atcay protein_coding protein_coding MGP_AJ_T0026381.1 MGP_AJ_G0017521.1 mouse_genomes_project 10 79004892 79033883 - MGP_AJ_P0026381 Atcay protein_coding nonsense_mediated_decay MGP_AJ_T0026382.1 MGP_AJ_G0017521.1 mouse_genomes_project 10 79010184 79015361 - Atcay protein_coding retained_intron MGP_AJ_T0009625.1 MGP_AJ_G0007747.1 mouse_genomes_project 10 102452823 102452931 + Mir6411 miRNA miRNA MGP_AJ_T0026018.1 MGP_AJ_G0017425.1 mouse_genomes_project 10 77356941 77365376 - MGP_AJ_P0026018 C2cd4c protein_coding protein_coding MGP_AJ_T0026019.1 MGP_AJ_G0017425.1 mouse_genomes_project 10 77356941 77365369 - MGP_AJ_P0026019 C2cd4c protein_coding protein_coding MGP_AJ_T0009605.1 MGP_AJ_G0007727.1 mouse_genomes_project 10 78398176 78398246 + Mir6912 miRNA miRNA MGP_AJ_T0024397.1 MGP_AJ_G0016959.1 mouse_genomes_project 10 1544204 1826164 + Esr1 protein_coding processed_transcript MGP_AJ_T0024398.1 MGP_AJ_G0016959.1 mouse_genomes_project 10 1544601 1933222 + MGP_AJ_P0024398 Esr1 protein_coding protein_coding MGP_AJ_T0024399.1 MGP_AJ_G0016959.1 mouse_genomes_project 10 1544608 1606883 + Esr1 protein_coding retained_intron MGP_AJ_T0024400.1 MGP_AJ_G0016959.1 mouse_genomes_project 10 1544625 1784768 + Esr1 protein_coding retained_intron MGP_AJ_T0024401.1 MGP_AJ_G0016959.1 mouse_genomes_project 10 1544633 1931369 + MGP_AJ_P0024401 Esr1 protein_coding protein_coding MGP_AJ_T0024402.1 MGP_AJ_G0016959.1 mouse_genomes_project 10 1645459 1929632 + MGP_AJ_P0024402 Esr1 protein_coding protein_coding MGP_AJ_T0024403.1 MGP_AJ_G0016959.1 mouse_genomes_project 10 1645459 1892805 + MGP_AJ_P0024403 Esr1 protein_coding protein_coding MGP_AJ_T0024404.1 MGP_AJ_G0016959.1 mouse_genomes_project 10 1647955 1715092 + Esr1 protein_coding processed_transcript MGP_AJ_T0024405.1 MGP_AJ_G0016959.1 mouse_genomes_project 10 1864648 1929264 + Esr1 protein_coding processed_transcript MGP_AJ_T0026642.1 MGP_AJ_G0017585.1 mouse_genomes_project 10 83987451 84007973 - MGP_AJ_P0026642 Rtcb protein_coding protein_coding MGP_AJ_T0026643.1 MGP_AJ_G0017585.1 mouse_genomes_project 10 83999369 84006289 - Rtcb protein_coding retained_intron MGP_AJ_T0026323.1 MGP_AJ_G0017501.1 mouse_genomes_project 10 78625043 78636275 - MGP_AJ_P0026323 Lingo3 protein_coding protein_coding MGP_AJ_T0024780.1 MGP_AJ_G0017069.1 mouse_genomes_project 10 21914645 21917884 + MGP_AJ_P0024780 Ctgf protein_coding protein_coding MGP_AJ_T0024781.1 MGP_AJ_G0017069.1 mouse_genomes_project 10 21914929 21917887 + MGP_AJ_P0024781 Ctgf protein_coding protein_coding MGP_AJ_T0024782.1 MGP_AJ_G0017069.1 mouse_genomes_project 10 21914983 21915576 + MGP_AJ_P0024782 Ctgf protein_coding protein_coding MGP_AJ_T0025974.1 MGP_AJ_G0017403.1 mouse_genomes_project 10 76285567 76295301 + MGP_AJ_P0025974 Ilvbl protein_coding unknown_likely_coding MGP_AJ_T0100528.1 MGP_AJ_G0038494.1 mouse_genomes_project 10 60309998 60310063 - Snord98 snoRNA snoRNA MGP_AJ_T0024411.1 MGP_AJ_G0016963.1 mouse_genomes_project 10 2563261 2571656 + MGP_AJ_P0024411 Vip protein_coding protein_coding MGP_AJ_T0009648.1 MGP_AJ_G0007770.1 mouse_genomes_project 10 127024770 127024831 - Mir6917 miRNA miRNA MGP_AJ_T0012451.1 MGP_AJ_G0010546.1 mouse_genomes_project 10 126320220 126320512 + processed_pseudogene processed_pseudogene MGP_AJ_T0009636.1 MGP_AJ_G0007758.1 mouse_genomes_project 10 124384105 124384178 + Gm22183 miRNA miRNA MGP_AJ_T0024850.1 MGP_AJ_G0017087.1 mouse_genomes_project 10 26483120 26540818 + MGP_AJ_P0024850 Soga3 protein_coding protein_coding MGP_AJ_T0012447.1 MGP_AJ_G0010542.1 mouse_genomes_project 10 117148360 117149268 + processed_pseudogene processed_pseudogene MGP_AJ_T0017134.1 MGP_AJ_G0015118.1 mouse_genomes_project 10 125635054 125636083 - Gm4189 processed_transcript retained_intron MGP_AJ_T0017135.1 MGP_AJ_G0015118.1 mouse_genomes_project 10 125635054 125636147 - Gm4189 processed_transcript processed_transcript MGP_AJ_T0000821.1 MGP_AJ_G0000757.1 mouse_genomes_project 10 82028226 82028696 + TEC TEC MGP_AJ_T0099251.1 MGP_AJ_G0037217.1 mouse_genomes_project 10 26693344 26693451 + Gm25596 snRNA snRNA MGP_AJ_T0027590.1 MGP_AJ_G0017905.1 mouse_genomes_project 10 128394535 128395486 - MGP_AJ_P0027590 protein_coding protein_coding MGP_AJ_T0012420.1 MGP_AJ_G0010515.1 mouse_genomes_project 10 57165368 57165617 + processed_pseudogene processed_pseudogene MGP_AJ_T0025186.1 MGP_AJ_G0017209.1 mouse_genomes_project 10 51527665 51702331 - MGP_AJ_P0025186 Man1a protein_coding protein_coding MGP_AJ_T0025187.1 MGP_AJ_G0017209.1 mouse_genomes_project 10 51529892 51702244 - MGP_AJ_P0025187 Man1a protein_coding protein_coding MGP_AJ_T0025188.1 MGP_AJ_G0017209.1 mouse_genomes_project 10 51599861 51702244 - Man1a protein_coding retained_intron MGP_AJ_T0025189.1 MGP_AJ_G0017209.1 mouse_genomes_project 10 51630857 51702271 - MGP_AJ_P0025189 Man1a protein_coding protein_coding MGP_AJ_T0025190.1 MGP_AJ_G0017209.1 mouse_genomes_project 10 51638992 51702272 - Man1a protein_coding retained_intron MGP_AJ_T0009582.1 MGP_AJ_G0007704.1 mouse_genomes_project 10 43458051 43458166 - Gm27410 miRNA miRNA MGP_AJ_T0025525.1 MGP_AJ_G0017302.1 mouse_genomes_project 10 65067366 65071811 - MGP_AJ_P0025525 Ado protein_coding protein_coding MGP_AJ_T0027233.1 MGP_AJ_G0017763.1 mouse_genomes_project 10 120389273 120409821 - MGP_AJ_P0027233 Tmem5 protein_coding protein_coding MGP_AJ_T0027234.1 MGP_AJ_G0017763.1 mouse_genomes_project 10 120391982 120409606 - MGP_AJ_P0027234 Tmem5 protein_coding nonsense_mediated_decay MGP_AJ_T0027235.1 MGP_AJ_G0017763.1 mouse_genomes_project 10 120392404 120401849 - Tmem5 protein_coding retained_intron MGP_AJ_T0027236.1 MGP_AJ_G0017763.1 mouse_genomes_project 10 120401104 120403165 - Tmem5 protein_coding retained_intron MGP_AJ_T0027237.1 MGP_AJ_G0017763.1 mouse_genomes_project 10 120401481 120408596 - Tmem5 protein_coding retained_intron MGP_AJ_T0027238.1 MGP_AJ_G0017763.1 mouse_genomes_project 10 120408515 120409576 - Tmem5 protein_coding processed_transcript MGP_AJ_T0026035.1 MGP_AJ_G0017434.1 mouse_genomes_project 10 77489781 77500229 - Polrmt protein_coding retained_intron MGP_AJ_T0026036.1 MGP_AJ_G0017434.1 mouse_genomes_project 10 77489785 77493063 - MGP_AJ_P0026036 Polrmt protein_coding protein_coding MGP_AJ_T0026037.1 MGP_AJ_G0017434.1 mouse_genomes_project 10 77489786 77500229 - Polrmt protein_coding retained_intron MGP_AJ_T0026038.1 MGP_AJ_G0017434.1 mouse_genomes_project 10 77489787 77490472 - Polrmt protein_coding processed_transcript MGP_AJ_T0026039.1 MGP_AJ_G0017434.1 mouse_genomes_project 10 77489788 77500237 - MGP_AJ_P0026039 Polrmt protein_coding protein_coding MGP_AJ_T0026040.1 MGP_AJ_G0017434.1 mouse_genomes_project 10 77489788 77500235 - MGP_AJ_P0026040 Polrmt protein_coding protein_coding MGP_AJ_T0026041.1 MGP_AJ_G0017434.1 mouse_genomes_project 10 77489830 77490457 - Polrmt protein_coding retained_intron MGP_AJ_T0026042.1 MGP_AJ_G0017434.1 mouse_genomes_project 10 77489831 77491402 - Polrmt protein_coding retained_intron MGP_AJ_T0026043.1 MGP_AJ_G0017434.1 mouse_genomes_project 10 77489832 77500227 - MGP_AJ_P0026043 Polrmt protein_coding nonsense_mediated_decay MGP_AJ_T0026044.1 MGP_AJ_G0017434.1 mouse_genomes_project 10 77489865 77491375 - Polrmt protein_coding retained_intron MGP_AJ_T0026045.1 MGP_AJ_G0017434.1 mouse_genomes_project 10 77490235 77492320 - Polrmt protein_coding retained_intron MGP_AJ_T0026046.1 MGP_AJ_G0017434.1 mouse_genomes_project 10 77491776 77493064 - Polrmt protein_coding retained_intron MGP_AJ_T0026047.1 MGP_AJ_G0017434.1 mouse_genomes_project 10 77497355 77500229 - Polrmt protein_coding processed_transcript MGP_AJ_T0025872.1 MGP_AJ_G0017374.1 mouse_genomes_project 10 75106280 75135116 - MGP_AJ_P0025872 Fam207a protein_coding protein_coding MGP_AJ_T0025756.1 MGP_AJ_G0017339.1 mouse_genomes_project 10 73350359 73352160 - MGP_AJ_P0025756 Ddt protein_coding protein_coding MGP_AJ_T0025757.1 MGP_AJ_G0017339.1 mouse_genomes_project 10 73350362 73352540 - MGP_AJ_P0025757 Ddt protein_coding protein_coding MGP_AJ_T0099255.1 MGP_AJ_G0037221.1 mouse_genomes_project 10 36110901 36111008 - Gm22911 snRNA snRNA MGP_AJ_T0025018.1 MGP_AJ_G0017153.1 mouse_genomes_project 10 39044046 39055655 + MGP_AJ_P0025018 Cd164 protein_coding protein_coding MGP_AJ_T0025019.1 MGP_AJ_G0017153.1 mouse_genomes_project 10 39044133 39049894 + Cd164 protein_coding retained_intron MGP_AJ_T0025020.1 MGP_AJ_G0017153.1 mouse_genomes_project 10 39044524 39053653 + MGP_AJ_P0025020 Cd164 protein_coding protein_coding MGP_AJ_T0025021.1 MGP_AJ_G0017153.1 mouse_genomes_project 10 39044676 39051498 + Cd164 protein_coding processed_transcript MGP_AJ_T0025496.1 MGP_AJ_G0017295.1 mouse_genomes_project 10 60985445 62548670 + MGP_AJ_P0025496 Ctnna3 protein_coding protein_coding MGP_AJ_T0025497.1 MGP_AJ_G0017295.1 mouse_genomes_project 10 61017298 62549372 + MGP_AJ_P0025497 Ctnna3 protein_coding protein_coding MGP_AJ_T0025498.1 MGP_AJ_G0017295.1 mouse_genomes_project 10 61063560 62548538 + MGP_AJ_P0025498 Ctnna3 protein_coding protein_coding MGP_AJ_T0025499.1 MGP_AJ_G0017295.1 mouse_genomes_project 10 61127307 61138953 + Ctnna3 protein_coding processed_transcript MGP_AJ_T0025500.1 MGP_AJ_G0017295.1 mouse_genomes_project 10 61369835 61629786 + Ctnna3 protein_coding processed_transcript MGP_AJ_T0024986.1 MGP_AJ_G0017143.1 mouse_genomes_project 10 38194452 38328723 + MGP_AJ_P0024986 Mettl24 protein_coding protein_coding MGP_AJ_T0006165.1 MGP_AJ_G0005145.1 mouse_genomes_project 10 125540424 125547819 + F420014N23Rik lincRNA lincRNA MGP_AJ_T0025173.1 MGP_AJ_G0017205.1 mouse_genomes_project 10 50966158 50974450 + MGP_AJ_P0025173 Pln protein_coding protein_coding MGP_AJ_T0025174.1 MGP_AJ_G0017205.1 mouse_genomes_project 10 50966158 50974450 + MGP_AJ_P0025174 Pln protein_coding protein_coding MGP_AJ_T0026324.1 MGP_AJ_G0017502.1 mouse_genomes_project 10 78645058 78647446 - MGP_AJ_P0026324 Gm10146 protein_coding protein_coding MGP_AJ_T0012452.1 MGP_AJ_G0010547.1 mouse_genomes_project 10 128645613 128646584 + processed_pseudogene processed_pseudogene MGP_AJ_T0026025.1 MGP_AJ_G0017429.1 mouse_genomes_project 10 77419406 77426882 + MGP_AJ_P0026025 Tpgs1 protein_coding protein_coding MGP_AJ_T0009624.1 MGP_AJ_G0007746.1 mouse_genomes_project 10 99928328 99928409 + Mir3059 miRNA miRNA MGP_AJ_T0024498.1 MGP_AJ_G0016978.1 mouse_genomes_project 10 4772810 4803452 + MGP_AJ_P0024498 Ppil4 protein_coding protein_coding MGP_AJ_T0024499.1 MGP_AJ_G0016978.1 mouse_genomes_project 10 4772827 4787668 + Ppil4 protein_coding retained_intron MGP_AJ_T0024500.1 MGP_AJ_G0016978.1 mouse_genomes_project 10 4772840 4793146 + MGP_AJ_P0024500 Ppil4 protein_coding nonsense_mediated_decay MGP_AJ_T0024501.1 MGP_AJ_G0016978.1 mouse_genomes_project 10 4779669 4785664 + Ppil4 protein_coding retained_intron MGP_AJ_T0025117.1 MGP_AJ_G0017182.1 mouse_genomes_project 10 42706674 42801004 + MGP_AJ_P0025117 Prep protein_coding protein_coding MGP_AJ_T0027291.1 MGP_AJ_G0017782.1 mouse_genomes_project 10 125438383 125465035 - MGP_AJ_P0027291 Os9 protein_coding protein_coding MGP_AJ_T0027292.1 MGP_AJ_G0017782.1 mouse_genomes_project 10 125438383 125465035 - MGP_AJ_P0027292 Os9 protein_coding protein_coding MGP_AJ_T0012403.1 MGP_AJ_G0010498.1 mouse_genomes_project 10 28998372 28999675 + processed_pseudogene processed_pseudogene MGP_AJ_T0024821.1 MGP_AJ_G0017081.1 mouse_genomes_project 10 24092864 24201520 + MGP_AJ_P0024821 Arhgap18 protein_coding protein_coding MGP_AJ_T0024822.1 MGP_AJ_G0017081.1 mouse_genomes_project 10 24111840 24263478 + MGP_AJ_P0024822 Arhgap18 protein_coding protein_coding MGP_AJ_T0024823.1 MGP_AJ_G0017081.1 mouse_genomes_project 10 24162926 24190781 + MGP_AJ_P0024823 Arhgap18 protein_coding protein_coding MGP_AJ_T0024824.1 MGP_AJ_G0017081.1 mouse_genomes_project 10 24204120 24263288 + Arhgap18 protein_coding processed_transcript MGP_AJ_T0006126.1 MGP_AJ_G0005125.1 mouse_genomes_project 10 87776601 87791115 + 1500026H17Rik lincRNA lincRNA MGP_AJ_T0025458.1 MGP_AJ_G0017286.1 mouse_genomes_project 10 60498667 60525666 + MGP_AJ_P0025458 Dna2 protein_coding protein_coding MGP_AJ_T0025459.1 MGP_AJ_G0017286.1 mouse_genomes_project 10 60498716 60525248 + MGP_AJ_P0025459 Dna2 protein_coding nonsense_mediated_decay MGP_AJ_T0025460.1 MGP_AJ_G0017286.1 mouse_genomes_project 10 60498721 60501273 + Dna2 protein_coding retained_intron MGP_AJ_T0025461.1 MGP_AJ_G0017286.1 mouse_genomes_project 10 60498751 60517639 + Dna2 protein_coding retained_intron MGP_AJ_T0025462.1 MGP_AJ_G0017286.1 mouse_genomes_project 10 60517190 60525665 + Dna2 protein_coding retained_intron MGP_AJ_T0025463.1 MGP_AJ_G0017286.1 mouse_genomes_project 10 60517485 60525660 + Dna2 protein_coding retained_intron MGP_AJ_T0025506.1 MGP_AJ_G0017298.1 mouse_genomes_project 10 64515199 64608473 - MGP_AJ_P0025506 Reep3 protein_coding protein_coding MGP_AJ_T0099102.1 MGP_AJ_G0037074.1 mouse_genomes_project 8 118802486 118803558 + Gm26971 sense_intronic sense_intronic MGP_AJ_T0090313.1 MGP_AJ_G0034019.1 mouse_genomes_project 8 103283332 103288380 + MGP_AJ_P0090313 Elmo3 protein_coding protein_coding MGP_AJ_T0089502.1 MGP_AJ_G0033752.1 mouse_genomes_project 8 69562685 69563680 + MGP_AJ_P0089502 Olfr372 protein_coding protein_coding MGP_AJ_T0005365.1 MGP_AJ_G0004546.1 mouse_genomes_project 8 65810916 65812448 + Gm15656 antisense antisense MGP_AJ_T0089999.1 MGP_AJ_G0033908.1 mouse_genomes_project 8 86725278 86725779 - MGP_AJ_P0089999 protein_coding protein_coding MGP_AJ_T0090416.1 MGP_AJ_G0034061.1 mouse_genomes_project 8 104220972 104263297 + MGP_AJ_P0090416 Prmt7 protein_coding protein_coding MGP_AJ_T0090417.1 MGP_AJ_G0034061.1 mouse_genomes_project 8 104221059 104245841 + MGP_AJ_P0090417 Prmt7 protein_coding protein_coding MGP_AJ_T0090418.1 MGP_AJ_G0034061.1 mouse_genomes_project 8 104221073 104253721 + Prmt7 protein_coding retained_intron MGP_AJ_T0090419.1 MGP_AJ_G0034061.1 mouse_genomes_project 8 104221254 104237508 + MGP_AJ_P0090419 Prmt7 protein_coding protein_coding MGP_AJ_T0090420.1 MGP_AJ_G0034061.1 mouse_genomes_project 8 104222562 104248481 + MGP_AJ_P0090420 Prmt7 protein_coding protein_coding MGP_AJ_T0090421.1 MGP_AJ_G0034061.1 mouse_genomes_project 8 104244976 104247816 + Prmt7 protein_coding processed_transcript MGP_AJ_T0090422.1 MGP_AJ_G0034061.1 mouse_genomes_project 8 104248182 104255259 + Prmt7 protein_coding processed_transcript MGP_AJ_T0090159.1 MGP_AJ_G0033961.1 mouse_genomes_project 8 92749297 92774343 + MGP_AJ_P0090159 Drc7 protein_coding unknown_likely_coding MGP_AJ_T0100242.1 MGP_AJ_G0038208.1 mouse_genomes_project 8 120845779 120845886 - Gm26497 snRNA snRNA MGP_AJ_T0010964.1 MGP_AJ_G0009086.1 mouse_genomes_project 8 53905594 53905703 + Gm25992 miRNA miRNA MGP_AJ_T0089202.1 MGP_AJ_G0033671.1 mouse_genomes_project 8 67469903 67477237 + MGP_AJ_P0089202 Hapln4 protein_coding protein_coding MGP_AJ_T0005324.1 MGP_AJ_G0004515.1 mouse_genomes_project 8 8774092 8775515 - Gm15875 antisense antisense MGP_AJ_T0010979.1 MGP_AJ_G0009101.1 mouse_genomes_project 8 81551273 81551392 - Mir1199 miRNA miRNA MGP_AJ_T0101512.1 MGP_AJ_G0039478.1 mouse_genomes_project 8 93435698 93435833 - Gm26265 snoRNA snoRNA MGP_AJ_T0088404.1 MGP_AJ_G0033414.1 mouse_genomes_project 8 19043888 19047695 + MGP_AJ_P0088404 Defb10 protein_coding protein_coding MGP_AJ_T0088083.1 MGP_AJ_G0033301.1 mouse_genomes_project 8 664735 670325 - MGP_AJ_P0088083 Cd209a protein_coding protein_coding MGP_AJ_T0088848.1 MGP_AJ_G0033564.1 mouse_genomes_project 8 43337517 43340483 - MGP_AJ_P0088848 Ankrd37 protein_coding protein_coding MGP_AJ_T0088849.1 MGP_AJ_G0033564.1 mouse_genomes_project 8 43337526 43340483 - Ankrd37 protein_coding processed_transcript MGP_AJ_T0088850.1 MGP_AJ_G0033564.1 mouse_genomes_project 8 43337529 43340182 - Ankrd37 protein_coding retained_intron MGP_AJ_T0088851.1 MGP_AJ_G0033564.1 mouse_genomes_project 8 43337580 43338484 - Ankrd37 protein_coding processed_transcript MGP_AJ_T0088852.1 MGP_AJ_G0033564.1 mouse_genomes_project 8 43338747 43340465 - Ankrd37 protein_coding retained_intron MGP_AJ_T0090798.1 MGP_AJ_G0034187.1 mouse_genomes_project 8 119382116 119385875 + MGP_AJ_P0090798 Foxf1 protein_coding protein_coding MGP_AJ_T0090320.1 MGP_AJ_G0034022.1 mouse_genomes_project 8 103307569 103326307 - Fhod1 protein_coding retained_intron MGP_AJ_T0090321.1 MGP_AJ_G0034022.1 mouse_genomes_project 8 103307569 103326351 - MGP_AJ_P0090321 Fhod1 protein_coding protein_coding MGP_AJ_T0090322.1 MGP_AJ_G0034022.1 mouse_genomes_project 8 103309344 103309971 - Fhod1 protein_coding retained_intron MGP_AJ_T0090323.1 MGP_AJ_G0034022.1 mouse_genomes_project 8 103314939 103316294 - Fhod1 protein_coding retained_intron MGP_AJ_T0090907.1 MGP_AJ_G0034210.1 mouse_genomes_project 8 120895857 120901168 + MGP_AJ_P0090907 Cdt1 protein_coding protein_coding MGP_AJ_T0089573.1 MGP_AJ_G0033782.1 mouse_genomes_project 8 74711153 74973426 - MGP_AJ_P0089573 Arhgap10 protein_coding protein_coding MGP_AJ_T0088410.1 MGP_AJ_G0033420.1 mouse_genomes_project 8 19154177 19159785 + MGP_AJ_P0088410 Fam90a1a protein_coding protein_coding MGP_AJ_T0089686.1 MGP_AJ_G0033823.1 mouse_genomes_project 8 81262014 81281029 - MGP_AJ_P0089686 Adgre5 protein_coding protein_coding MGP_AJ_T0089687.1 MGP_AJ_G0033823.1 mouse_genomes_project 8 81262125 81280872 - MGP_AJ_P0089687 Adgre5 protein_coding protein_coding MGP_AJ_T0089688.1 MGP_AJ_G0033823.1 mouse_genomes_project 8 81262127 81280876 - MGP_AJ_P0089688 Adgre5 protein_coding protein_coding MGP_AJ_T0089689.1 MGP_AJ_G0033823.1 mouse_genomes_project 8 81262581 81263594 - Adgre5 protein_coding retained_intron MGP_AJ_T0089690.1 MGP_AJ_G0033823.1 mouse_genomes_project 8 81264011 81268006 - Adgre5 protein_coding retained_intron MGP_AJ_T0089691.1 MGP_AJ_G0033823.1 mouse_genomes_project 8 81267249 81268032 - Adgre5 protein_coding retained_intron MGP_AJ_T0089692.1 MGP_AJ_G0033823.1 mouse_genomes_project 8 81273242 81280886 - MGP_AJ_P0089692 Adgre5 protein_coding nonsense_mediated_decay MGP_AJ_T0088403.1 MGP_AJ_G0033413.1 mouse_genomes_project 8 19024877 19028464 + MGP_AJ_P0088403 Defb2 protein_coding protein_coding MGP_AJ_T0088789.1 MGP_AJ_G0033549.1 mouse_genomes_project 8 40618436 40630281 - MGP_AJ_P0088789 Zfp42 protein_coding protein_coding MGP_AJ_T0090620.1 MGP_AJ_G0034130.1 mouse_genomes_project 8 110089495 110103533 + MGP_AJ_P0090620 Gabarapl2 protein_coding protein_coding MGP_AJ_T0090621.1 MGP_AJ_G0034130.1 mouse_genomes_project 8 110089550 110090564 + Gabarapl2 protein_coding retained_intron MGP_AJ_T0090622.1 MGP_AJ_G0034130.1 mouse_genomes_project 8 110089611 110105308 + MGP_AJ_P0090622 Gabarapl2 protein_coding unknown_likely_coding MGP_AJ_T0090623.1 MGP_AJ_G0034130.1 mouse_genomes_project 8 110089860 110102662 + Gabarapl2 protein_coding retained_intron MGP_AJ_T0090820.1 MGP_AJ_G0034192.1 mouse_genomes_project 8 119854996 119884338 - MGP_AJ_P0090820 Fbxo31 protein_coding protein_coding MGP_AJ_T0090821.1 MGP_AJ_G0034192.1 mouse_genomes_project 8 119859561 119864650 - Fbxo31 protein_coding processed_transcript MGP_AJ_T0090822.1 MGP_AJ_G0034192.1 mouse_genomes_project 8 119861185 119865512 - Fbxo31 protein_coding retained_intron MGP_AJ_T0090823.1 MGP_AJ_G0034192.1 mouse_genomes_project 8 119869879 119884322 - MGP_AJ_P0090823 Fbxo31 protein_coding protein_coding MGP_AJ_T0090927.1 MGP_AJ_G0034220.1 mouse_genomes_project 8 121407133 121424626 + MGP_AJ_P0090927 Spg7 protein_coding protein_coding MGP_AJ_T0090928.1 MGP_AJ_G0034220.1 mouse_genomes_project 8 121409453 121442601 + MGP_AJ_P0090928 Spg7 protein_coding protein_coding MGP_AJ_T0090929.1 MGP_AJ_G0034220.1 mouse_genomes_project 8 121409697 121442399 + MGP_AJ_P0090929 Spg7 protein_coding protein_coding MGP_AJ_T0090930.1 MGP_AJ_G0034220.1 mouse_genomes_project 8 121409750 121442594 + MGP_AJ_P0090930 Spg7 protein_coding protein_coding MGP_AJ_T0090931.1 MGP_AJ_G0034220.1 mouse_genomes_project 8 121409782 121442592 + Spg7 protein_coding retained_intron MGP_AJ_T0090932.1 MGP_AJ_G0034220.1 mouse_genomes_project 8 121418038 121433750 + MGP_AJ_P0090932 Spg7 protein_coding nonsense_mediated_decay MGP_AJ_T0090933.1 MGP_AJ_G0034220.1 mouse_genomes_project 8 121425047 121433776 + Spg7 protein_coding retained_intron MGP_AJ_T0090934.1 MGP_AJ_G0034220.1 mouse_genomes_project 8 121425419 121442594 + MGP_AJ_P0090934 Spg7 protein_coding protein_coding MGP_AJ_T0090935.1 MGP_AJ_G0034220.1 mouse_genomes_project 8 121431895 121438579 + Spg7 protein_coding retained_intron MGP_AJ_T0090936.1 MGP_AJ_G0034220.1 mouse_genomes_project 8 121432065 121436504 + Spg7 protein_coding processed_transcript MGP_AJ_T0090937.1 MGP_AJ_G0034220.1 mouse_genomes_project 8 121436463 121442594 + MGP_AJ_P0090937 Spg7 protein_coding protein_coding MGP_AJ_T0101466.1 MGP_AJ_G0039432.1 mouse_genomes_project 8 15179605 15179715 - Gm25665 snoRNA snoRNA MGP_AJ_T0090044.1 MGP_AJ_G0033924.1 mouse_genomes_project 8 90664213 90687899 - MGP_AJ_P0090044 Ces1b protein_coding unknown_likely_coding MGP_AJ_T0090045.1 MGP_AJ_G0033924.1 mouse_genomes_project 8 90664218 90688000 - MGP_AJ_P0090045 Ces1b protein_coding protein_coding MGP_AJ_T0009129.1 MGP_AJ_G0007341.1 mouse_genomes_project 8 81428695 81441092 - Gm26721 lincRNA lincRNA MGP_AJ_T0088124.1 MGP_AJ_G0033311.1 mouse_genomes_project 8 1187786 1190904 + MGP_AJ_P0088124 Snapc2 protein_coding protein_coding MGP_AJ_T0090209.1 MGP_AJ_G0033978.1 mouse_genomes_project 8 93541870 93566513 - MGP_AJ_P0090209 Got2 protein_coding protein_coding MGP_AJ_T0090210.1 MGP_AJ_G0033978.1 mouse_genomes_project 8 93544558 93550365 - Got2 protein_coding processed_transcript MGP_AJ_T0089717.1 MGP_AJ_G0033831.1 mouse_genomes_project 8 81561145 81568773 + Palm3 protein_coding retained_intron MGP_AJ_T0089718.1 MGP_AJ_G0033831.1 mouse_genomes_project 8 81561145 81569880 + MGP_AJ_P0089718 Palm3 protein_coding protein_coding MGP_AJ_T0089719.1 MGP_AJ_G0033831.1 mouse_genomes_project 8 81565732 81566707 + Palm3 protein_coding retained_intron MGP_AJ_T0089645.1 MGP_AJ_G0033808.1 mouse_genomes_project 8 80384967 80605490 + MGP_AJ_P0089645 Rnf150 protein_coding protein_coding MGP_AJ_T0089951.1 MGP_AJ_G0033893.1 mouse_genomes_project 8 84280060 84280965 + MGP_AJ_P0089951 Gm10638 protein_coding protein_coding MGP_AJ_T0102918.1 MGP_AJ_G0040658.1 mouse_genomes_project 8 16126232 16128763 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0090450.1 MGP_AJ_G0034077.1 mouse_genomes_project 8 105095128 105122603 - MGP_AJ_P0090450 Terf2 protein_coding protein_coding MGP_AJ_T0090451.1 MGP_AJ_G0034077.1 mouse_genomes_project 8 105095130 105122248 - MGP_AJ_P0090451 Terf2 protein_coding nonsense_mediated_decay MGP_AJ_T0090452.1 MGP_AJ_G0034077.1 mouse_genomes_project 8 105095130 105122603 - MGP_AJ_P0090452 Terf2 protein_coding protein_coding MGP_AJ_T0090453.1 MGP_AJ_G0034077.1 mouse_genomes_project 8 105095656 105122572 - MGP_AJ_P0090453 Terf2 protein_coding protein_coding MGP_AJ_T0090454.1 MGP_AJ_G0034077.1 mouse_genomes_project 8 105101245 105122605 - MGP_AJ_P0090454 Terf2 protein_coding protein_coding MGP_AJ_T0090455.1 MGP_AJ_G0034077.1 mouse_genomes_project 8 105102047 105105604 - Terf2 protein_coding retained_intron MGP_AJ_T0090456.1 MGP_AJ_G0034077.1 mouse_genomes_project 8 105105156 105107178 - Terf2 protein_coding retained_intron MGP_AJ_T0090457.1 MGP_AJ_G0034077.1 mouse_genomes_project 8 105105165 105108954 - Terf2 protein_coding retained_intron MGP_AJ_T0088435.1 MGP_AJ_G0033432.1 mouse_genomes_project 8 19655578 19670047 - MGP_AJ_P0088435 Smim19 protein_coding protein_coding MGP_AJ_T0088436.1 MGP_AJ_G0033432.1 mouse_genomes_project 8 19655578 19670047 - MGP_AJ_P0088436 Smim19 protein_coding protein_coding MGP_AJ_T0009092.1 MGP_AJ_G0007310.1 mouse_genomes_project 8 27780667 27794609 + lincRNA lincRNA MGP_AJ_T0011018.1 MGP_AJ_G0009140.1 mouse_genomes_project 8 115800625 115800680 - Gm27361 miRNA miRNA MGP_AJ_T0090588.1 MGP_AJ_G0034119.1 mouse_genomes_project 8 109475246 109496733 - Fa2h protein_coding processed_transcript MGP_AJ_T0090589.1 MGP_AJ_G0034119.1 mouse_genomes_project 8 109475252 109524982 - MGP_AJ_P0090589 Fa2h protein_coding protein_coding MGP_AJ_T0090590.1 MGP_AJ_G0034119.1 mouse_genomes_project 8 109475876 109478169 - Fa2h protein_coding processed_transcript MGP_AJ_T0090591.1 MGP_AJ_G0034119.1 mouse_genomes_project 8 109477581 109524976 - Fa2h protein_coding retained_intron MGP_AJ_T0090951.1 MGP_AJ_G0034224.1 mouse_genomes_project 8 121524861 121546634 + MGP_AJ_P0090951 Dpep1 protein_coding protein_coding MGP_AJ_T0088930.1 MGP_AJ_G0033588.1 mouse_genomes_project 8 45583461 45809218 - MGP_AJ_P0088930 Tenm3 protein_coding protein_coding MGP_AJ_T0088931.1 MGP_AJ_G0033588.1 mouse_genomes_project 8 45585477 46213654 - MGP_AJ_P0088931 Tenm3 protein_coding protein_coding MGP_AJ_T0088932.1 MGP_AJ_G0033588.1 mouse_genomes_project 8 45585500 46042441 - MGP_AJ_P0088932 Tenm3 protein_coding protein_coding MGP_AJ_T0088933.1 MGP_AJ_G0033588.1 mouse_genomes_project 8 45635416 45659622 - Tenm3 protein_coding processed_transcript MGP_AJ_T0088934.1 MGP_AJ_G0033588.1 mouse_genomes_project 8 45694736 45920911 - MGP_AJ_P0088934 Tenm3 protein_coding protein_coding MGP_AJ_T0088935.1 MGP_AJ_G0033588.1 mouse_genomes_project 8 45758229 45921257 - MGP_AJ_P0088935 Tenm3 protein_coding protein_coding MGP_AJ_T0088936.1 MGP_AJ_G0033588.1 mouse_genomes_project 8 45758229 45921064 - MGP_AJ_P0088936 Tenm3 protein_coding protein_coding MGP_AJ_T0089905.1 MGP_AJ_G0033878.1 mouse_genomes_project 8 82632686 82647433 + MGP_AJ_P0089905 Man2b1 protein_coding protein_coding MGP_AJ_T0088025.1 MGP_AJ_G0033285.1 mouse_genomes_project 8 366132 376701 - MGP_AJ_P0088025 Pex11g protein_coding protein_coding MGP_AJ_T0088026.1 MGP_AJ_G0033285.1 mouse_genomes_project 8 366135 376666 - MGP_AJ_P0088026 Pex11g protein_coding protein_coding MGP_AJ_T0088027.1 MGP_AJ_G0033285.1 mouse_genomes_project 8 372244 376691 - MGP_AJ_P0088027 Pex11g protein_coding protein_coding MGP_AJ_T0088312.1 MGP_AJ_G0033372.1 mouse_genomes_project 8 10878233 10911522 + MGP_AJ_P0088312 Fbxo25 protein_coding unknown_likely_coding MGP_AJ_T0088313.1 MGP_AJ_G0033372.1 mouse_genomes_project 8 10878259 10912391 + MGP_AJ_P0088313 Fbxo25 protein_coding protein_coding MGP_AJ_T0089056.1 MGP_AJ_G0033623.1 mouse_genomes_project 8 61293591 61497213 - MGP_AJ_P0089056 Tll1 protein_coding protein_coding MGP_AJ_T0101479.1 MGP_AJ_G0039445.1 mouse_genomes_project 8 36327477 36327610 - Gm23128 snoRNA snoRNA MGP_AJ_T0088895.1 MGP_AJ_G0033574.1 mouse_genomes_project 8 44093513 44203846 + MGP_AJ_P0088895 Irf2 protein_coding protein_coding MGP_AJ_T0089727.1 MGP_AJ_G0033838.1 mouse_genomes_project 8 81667620 81674123 + MGP_AJ_P0089727 Podnl1 protein_coding protein_coding MGP_AJ_T0089728.1 MGP_AJ_G0033838.1 mouse_genomes_project 8 81669449 81674112 + Podnl1 protein_coding retained_intron MGP_AJ_T0089204.1 MGP_AJ_G0033673.1 mouse_genomes_project 8 67517585 67525971 - MGP_AJ_P0089204 Rfxank protein_coding protein_coding MGP_AJ_T0089206.1 MGP_AJ_G0033673.1 mouse_genomes_project 8 67520166 67525998 - MGP_AJ_P0089206 Rfxank protein_coding unknown_likely_coding MGP_AJ_T0089289.1 MGP_AJ_G0033691.1 mouse_genomes_project 8 67901565 67903995 - 2810428I15Rik protein_coding retained_intron MGP_AJ_T0089290.1 MGP_AJ_G0033691.1 mouse_genomes_project 8 67901568 67903386 - 2810428I15Rik protein_coding retained_intron MGP_AJ_T0089291.1 MGP_AJ_G0033691.1 mouse_genomes_project 8 67901568 67903700 - 2810428I15Rik protein_coding processed_transcript MGP_AJ_T0089292.1 MGP_AJ_G0033691.1 mouse_genomes_project 8 67901568 67904026 - MGP_AJ_P0089292 2810428I15Rik protein_coding protein_coding MGP_AJ_T0089293.1 MGP_AJ_G0033691.1 mouse_genomes_project 8 67901572 67904011 - MGP_AJ_P0089293 2810428I15Rik protein_coding protein_coding MGP_AJ_T0089294.1 MGP_AJ_G0033691.1 mouse_genomes_project 8 67901671 67903382 - 2810428I15Rik protein_coding retained_intron MGP_AJ_T0089295.1 MGP_AJ_G0033691.1 mouse_genomes_project 8 67902518 67903973 - 2810428I15Rik protein_coding retained_intron MGP_AJ_T0089296.1 MGP_AJ_G0033691.1 mouse_genomes_project 8 67903124 67903987 - 2810428I15Rik protein_coding retained_intron MGP_AJ_T0091037.1 MGP_AJ_G0034251.1 mouse_genomes_project 8 122903071 122935243 + MGP_AJ_P0091037 Cog2 protein_coding protein_coding MGP_AJ_T0091038.1 MGP_AJ_G0034251.1 mouse_genomes_project 8 122903108 122912375 + MGP_AJ_P0091038 Cog2 protein_coding nonsense_mediated_decay MGP_AJ_T0091039.1 MGP_AJ_G0034251.1 mouse_genomes_project 8 122903109 122928275 + Cog2 protein_coding retained_intron MGP_AJ_T0091040.1 MGP_AJ_G0034251.1 mouse_genomes_project 8 122903123 122912347 + MGP_AJ_P0091040 Cog2 protein_coding nonsense_mediated_decay MGP_AJ_T0091041.1 MGP_AJ_G0034251.1 mouse_genomes_project 8 122917722 122926901 + Cog2 protein_coding retained_intron MGP_AJ_T0088859.1 MGP_AJ_G0033566.1 mouse_genomes_project 8 43370837 43486276 - MGP_AJ_P0088859 Snx25 protein_coding protein_coding MGP_AJ_T0088860.1 MGP_AJ_G0033566.1 mouse_genomes_project 8 43370852 43453417 - Snx25 protein_coding retained_intron MGP_AJ_T0088861.1 MGP_AJ_G0033566.1 mouse_genomes_project 8 43371033 43417091 - MGP_AJ_P0088861 Snx25 protein_coding protein_coding MGP_AJ_T0088862.1 MGP_AJ_G0033566.1 mouse_genomes_project 8 43386982 43394031 - Snx25 protein_coding processed_transcript MGP_AJ_T0088863.1 MGP_AJ_G0033566.1 mouse_genomes_project 8 43393654 43460822 - MGP_AJ_P0088863 Snx25 protein_coding nonsense_mediated_decay MGP_AJ_T0088864.1 MGP_AJ_G0033566.1 mouse_genomes_project 8 43393698 43426500 - Snx25 protein_coding processed_transcript MGP_AJ_T0088865.1 MGP_AJ_G0033566.1 mouse_genomes_project 8 43416648 43442032 - Snx25 protein_coding retained_intron MGP_AJ_T0089323.1 MGP_AJ_G0033695.1 mouse_genomes_project 8 67938206 67992078 + MGP_AJ_P0089323 Ell protein_coding protein_coding MGP_AJ_T0090486.1 MGP_AJ_G0034087.1 mouse_genomes_project 8 107606926 107616119 + MGP_AJ_P0090486 Txnl4b protein_coding protein_coding MGP_AJ_T0090487.1 MGP_AJ_G0034087.1 mouse_genomes_project 8 107610955 107615591 + MGP_AJ_P0090487 Txnl4b protein_coding protein_coding MGP_AJ_T0009113.1 MGP_AJ_G0007328.1 mouse_genomes_project 8 58579284 58586622 - 1700001D01Rik lincRNA lincRNA MGP_AJ_T0101482.1 MGP_AJ_G0039448.1 mouse_genomes_project 8 40696954 40697084 + Gm22986 snoRNA snoRNA MGP_AJ_T0088572.1 MGP_AJ_G0033467.1 mouse_genomes_project 8 22969358 22990050 - MGP_AJ_P0088572 Bag4 protein_coding protein_coding MGP_AJ_T0090716.1 MGP_AJ_G0034165.1 mouse_genomes_project 8 117835777 117848949 - MGP_AJ_P0090716 Hsdl1 protein_coding protein_coding MGP_AJ_T0009144.1 MGP_AJ_G0007355.1 mouse_genomes_project 8 85010633 85061137 + Gm2694 lincRNA lincRNA MGP_AJ_T0009145.1 MGP_AJ_G0007355.1 mouse_genomes_project 8 85010633 85057325 + Gm2694 lincRNA lincRNA MGP_AJ_T0009146.1 MGP_AJ_G0007355.1 mouse_genomes_project 8 85010633 85061136 + Gm2694 lincRNA lincRNA MGP_AJ_T0009147.1 MGP_AJ_G0007355.1 mouse_genomes_project 8 85010665 85061135 + Gm2694 lincRNA lincRNA MGP_AJ_T0009148.1 MGP_AJ_G0007355.1 mouse_genomes_project 8 85010937 85060590 + Gm2694 lincRNA lincRNA MGP_AJ_T0009149.1 MGP_AJ_G0007355.1 mouse_genomes_project 8 85010955 85061137 + Gm2694 lincRNA lincRNA MGP_AJ_T0009150.1 MGP_AJ_G0007355.1 mouse_genomes_project 8 85010978 85037606 + Gm2694 lincRNA lincRNA MGP_AJ_T0011025.1 MGP_AJ_G0009147.1 mouse_genomes_project 8 121476870 121476937 + Mir7080 miRNA miRNA MGP_AJ_T0089389.1 MGP_AJ_G0033723.1 mouse_genomes_project 8 68842684 68845769 + MGP_AJ_P0089389 Ocel1 protein_coding protein_coding MGP_AJ_T0089390.1 MGP_AJ_G0033723.1 mouse_genomes_project 8 68842725 68845076 + MGP_AJ_P0089390 Ocel1 protein_coding protein_coding MGP_AJ_T0089391.1 MGP_AJ_G0033723.1 mouse_genomes_project 8 68842732 68850748 + MGP_AJ_P0089391 Ocel1 protein_coding protein_coding MGP_AJ_T0089392.1 MGP_AJ_G0033723.1 mouse_genomes_project 8 68843859 68844342 + Ocel1 protein_coding retained_intron MGP_AJ_T0009189.1 MGP_AJ_G0007381.1 mouse_genomes_project 8 118872823 118877371 + Gm10614 lincRNA lincRNA MGP_AJ_T0002326.1 MGP_AJ_G0002237.1 mouse_genomes_project 8 10218210 10219296 - TEC TEC MGP_AJ_T0090120.1 MGP_AJ_G0033948.1 mouse_genomes_project 8 92348986 92357406 + MGP_AJ_P0090120 Arl2bp protein_coding protein_coding MGP_AJ_T0090121.1 MGP_AJ_G0033948.1 mouse_genomes_project 8 92349457 92357406 + MGP_AJ_P0090121 Arl2bp protein_coding protein_coding MGP_AJ_T0088015.1 MGP_AJ_G0033282.1 mouse_genomes_project 8 54724 183713 - MGP_AJ_P0088015 Insr protein_coding unknown_likely_coding MGP_AJ_T0088016.1 MGP_AJ_G0033282.1 mouse_genomes_project 8 54732 184202 - MGP_AJ_P0088016 Insr protein_coding protein_coding MGP_AJ_T0088017.1 MGP_AJ_G0033282.1 mouse_genomes_project 8 115887 184136 - Insr protein_coding retained_intron MGP_AJ_T0005327.1 MGP_AJ_G0004517.1 mouse_genomes_project 8 9804698 9822126 - Gm15347 antisense antisense MGP_AJ_T0015985.1 MGP_AJ_G0014080.1 mouse_genomes_project 8 31529567 31529954 - processed_pseudogene processed_pseudogene MGP_AJ_T0090239.1 MGP_AJ_G0033993.1 mouse_genomes_project 8 102417282 102430715 - Nae1 protein_coding processed_transcript MGP_AJ_T0090240.1 MGP_AJ_G0033993.1 mouse_genomes_project 8 102417282 102442258 - MGP_AJ_P0090240 Nae1 protein_coding protein_coding MGP_AJ_T0090241.1 MGP_AJ_G0033993.1 mouse_genomes_project 8 102417282 102442257 - MGP_AJ_P0090241 Nae1 protein_coding protein_coding MGP_AJ_T0090242.1 MGP_AJ_G0033993.1 mouse_genomes_project 8 102417288 102423798 - Nae1 protein_coding retained_intron MGP_AJ_T0090243.1 MGP_AJ_G0033993.1 mouse_genomes_project 8 102417291 102424887 - Nae1 protein_coding retained_intron MGP_AJ_T0090244.1 MGP_AJ_G0033993.1 mouse_genomes_project 8 102419487 102423858 - Nae1 protein_coding retained_intron MGP_AJ_T0090245.1 MGP_AJ_G0033993.1 mouse_genomes_project 8 102424380 102435449 - Nae1 protein_coding retained_intron MGP_AJ_T0090246.1 MGP_AJ_G0033993.1 mouse_genomes_project 8 102426541 102430747 - Nae1 protein_coding retained_intron MGP_AJ_T0090247.1 MGP_AJ_G0033993.1 mouse_genomes_project 8 102430438 102442209 - Nae1 protein_coding retained_intron MGP_AJ_T0090248.1 MGP_AJ_G0033993.1 mouse_genomes_project 8 102430867 102434868 - Nae1 protein_coding retained_intron MGP_AJ_T0090249.1 MGP_AJ_G0033993.1 mouse_genomes_project 8 102435563 102442235 - Nae1 protein_coding retained_intron MGP_AJ_T0018489.1 MGP_AJ_G0015701.1 mouse_genomes_project 8 97131097 97234047 - Gm15680 processed_transcript processed_transcript MGP_AJ_T0089401.1 MGP_AJ_G0033725.1 mouse_genomes_project 8 68855660 68867189 - MGP_AJ_P0089401 Ushbp1 protein_coding protein_coding MGP_AJ_T0090682.1 MGP_AJ_G0034152.1 mouse_genomes_project 8 115399717 115446301 + MGP_AJ_P0090682 Gan protein_coding protein_coding MGP_AJ_T0011706.1 MGP_AJ_G0009828.1 mouse_genomes_project 8 531110 531437 + Gm22204 misc_RNA misc_RNA MGP_AJ_T0090613.1 MGP_AJ_G0034124.1 mouse_genomes_project 8 109829964 109834782 - MGP_AJ_P0090613 Ctrb1 protein_coding protein_coding MGP_AJ_T0090579.1 MGP_AJ_G0034116.1 mouse_genomes_project 8 109273481 109380929 - MGP_AJ_P0090579 Glg1 protein_coding protein_coding MGP_AJ_T0090580.1 MGP_AJ_G0034116.1 mouse_genomes_project 8 109276585 109296948 - MGP_AJ_P0090580 Glg1 protein_coding protein_coding MGP_AJ_T0090581.1 MGP_AJ_G0034116.1 mouse_genomes_project 8 109276625 109380913 - MGP_AJ_P0090581 Glg1 protein_coding nonsense_mediated_decay MGP_AJ_T0090582.1 MGP_AJ_G0034116.1 mouse_genomes_project 8 109276958 109380929 - MGP_AJ_P0090582 Glg1 protein_coding protein_coding MGP_AJ_T0088602.1 MGP_AJ_G0033478.1 mouse_genomes_project 8 24194329 24198455 + MGP_AJ_P0088602 Zfp703 protein_coding protein_coding MGP_AJ_T0088603.1 MGP_AJ_G0033478.1 mouse_genomes_project 8 24194329 24198455 + MGP_AJ_P0088603 Zfp703 protein_coding protein_coding MGP_AJ_T0089530.1 MGP_AJ_G0033768.1 mouse_genomes_project 8 70101439 70107311 - MGP_AJ_P0089530 Smim7 protein_coding protein_coding MGP_AJ_T0089531.1 MGP_AJ_G0033768.1 mouse_genomes_project 8 70103738 70107272 - MGP_AJ_P0089531 Smim7 protein_coding protein_coding MGP_AJ_T0089532.1 MGP_AJ_G0033768.1 mouse_genomes_project 8 70106810 70107285 - Smim7 protein_coding retained_intron MGP_AJ_T0089312.1 MGP_AJ_G0033694.1 mouse_genomes_project 8 67926014 67933799 + MGP_AJ_P0089312 Fkbp8 protein_coding protein_coding MGP_AJ_T0089313.1 MGP_AJ_G0033694.1 mouse_genomes_project 8 67926037 67933797 + MGP_AJ_P0089313 Fkbp8 protein_coding protein_coding MGP_AJ_T0089314.1 MGP_AJ_G0033694.1 mouse_genomes_project 8 67926052 67930806 + Fkbp8 protein_coding retained_intron MGP_AJ_T0089315.1 MGP_AJ_G0033694.1 mouse_genomes_project 8 67926136 67933798 + MGP_AJ_P0089315 Fkbp8 protein_coding protein_coding MGP_AJ_T0089316.1 MGP_AJ_G0033694.1 mouse_genomes_project 8 67926299 67928951 + Fkbp8 protein_coding retained_intron MGP_AJ_T0089317.1 MGP_AJ_G0033694.1 mouse_genomes_project 8 67927106 67927936 + MGP_AJ_P0089317 Fkbp8 protein_coding protein_coding MGP_AJ_T0089318.1 MGP_AJ_G0033694.1 mouse_genomes_project 8 67929476 67932642 + Fkbp8 protein_coding retained_intron MGP_AJ_T0089319.1 MGP_AJ_G0033694.1 mouse_genomes_project 8 67930086 67933427 + Fkbp8 protein_coding retained_intron MGP_AJ_T0089320.1 MGP_AJ_G0033694.1 mouse_genomes_project 8 67930473 67933442 + Fkbp8 protein_coding retained_intron MGP_AJ_T0089321.1 MGP_AJ_G0033694.1 mouse_genomes_project 8 67930536 67933338 + Fkbp8 protein_coding retained_intron MGP_AJ_T0089322.1 MGP_AJ_G0033694.1 mouse_genomes_project 8 67932587 67933528 + MGP_AJ_P0089322 Fkbp8 protein_coding nonsense_mediated_decay MGP_AJ_T0015969.1 MGP_AJ_G0014064.1 mouse_genomes_project 8 16215868 16216706 - processed_pseudogene processed_pseudogene MGP_AJ_T0101505.1 MGP_AJ_G0039471.1 mouse_genomes_project 8 82597790 82597860 + Gm25506 snoRNA snoRNA MGP_AJ_T0090081.1 MGP_AJ_G0033934.1 mouse_genomes_project 8 91696030 91714957 - MGP_AJ_P0090081 Nudt21 protein_coding protein_coding MGP_AJ_T0090584.1 MGP_AJ_G0034118.1 mouse_genomes_project 8 109439744 109468289 - MGP_AJ_P0090584 Mlkl protein_coding protein_coding MGP_AJ_T0090585.1 MGP_AJ_G0034118.1 mouse_genomes_project 8 109439747 109468289 - MGP_AJ_P0090585 Mlkl protein_coding protein_coding MGP_AJ_T0090586.1 MGP_AJ_G0034118.1 mouse_genomes_project 8 109439749 109445040 - Mlkl protein_coding processed_transcript MGP_AJ_T0090587.1 MGP_AJ_G0034118.1 mouse_genomes_project 8 109461150 109467905 - MGP_AJ_P0090587 Mlkl protein_coding protein_coding MGP_AJ_T0090583.1 MGP_AJ_G0034117.1 mouse_genomes_project 8 109396402 109427348 - MGP_AJ_P0090583 Rfwd3 protein_coding protein_coding MGP_AJ_T0098486.1 MGP_AJ_G0036470.1 mouse_genomes_project 8 120768485 120770522 + pseudogene pseudogene MGP_AJ_T0088392.1 MGP_AJ_G0033403.1 mouse_genomes_project 8 18041078 18046129 + MGP_AJ_P0088392 Defb33 protein_coding protein_coding MGP_AJ_T0090301.1 MGP_AJ_G0034013.1 mouse_genomes_project 8 103242606 103247285 + MGP_AJ_P0090301 Fbxl8 protein_coding protein_coding MGP_AJ_T0090302.1 MGP_AJ_G0034013.1 mouse_genomes_project 8 103242640 103247129 + MGP_AJ_P0090302 Fbxl8 protein_coding nonsense_mediated_decay MGP_AJ_T0088613.1 MGP_AJ_G0033483.1 mouse_genomes_project 8 24358267 24394954 - MGP_AJ_P0088613 Rab11fip1 protein_coding protein_coding MGP_AJ_T0088614.1 MGP_AJ_G0033483.1 mouse_genomes_project 8 24358267 24394954 - MGP_AJ_P0088614 Rab11fip1 protein_coding protein_coding MGP_AJ_T0089761.1 MGP_AJ_G0033848.1 mouse_genomes_project 8 82211782 82229109 - MGP_AJ_P0089761 Nacc1 protein_coding protein_coding MGP_AJ_T0011020.1 MGP_AJ_G0009142.1 mouse_genomes_project 8 118820990 118821049 + Mir7687 miRNA miRNA MGP_AJ_T0090509.1 MGP_AJ_G0034094.1 mouse_genomes_project 8 107927317 107963537 + Phlpp2 protein_coding retained_intron MGP_AJ_T0090510.1 MGP_AJ_G0034094.1 mouse_genomes_project 8 107927394 107999628 + MGP_AJ_P0090510 Phlpp2 protein_coding protein_coding MGP_AJ_T0010967.1 MGP_AJ_G0009089.1 mouse_genomes_project 8 65007064 65007157 - Gm44391 miRNA miRNA MGP_AJ_T0016030.1 MGP_AJ_G0014125.1 mouse_genomes_project 8 97807163 97807668 + processed_pseudogene processed_pseudogene MGP_AJ_T0010991.1 MGP_AJ_G0009113.1 mouse_genomes_project 8 83243835 83243952 + Mir8109 miRNA miRNA MGP_AJ_T0088616.1 MGP_AJ_G0033485.1 mouse_genomes_project 8 24446708 24450521 - MGP_AJ_P0088616 Adrb3 protein_coding protein_coding MGP_AJ_T0088617.1 MGP_AJ_G0033485.1 mouse_genomes_project 8 24446933 24449516 - MGP_AJ_P0088617 Adrb3 protein_coding protein_coding MGP_AJ_T0088618.1 MGP_AJ_G0033485.1 mouse_genomes_project 8 24447731 24449427 - MGP_AJ_P0088618 Adrb3 protein_coding protein_coding MGP_AJ_T0089870.1 MGP_AJ_G0033870.1 mouse_genomes_project 8 82565717 82572897 - MGP_AJ_P0089870 Asna1 protein_coding protein_coding MGP_AJ_T0088060.1 MGP_AJ_G0033295.1 mouse_genomes_project 8 547312 560008 + MGP_AJ_P0088060 Stxbp2 protein_coding protein_coding MGP_AJ_T0088061.1 MGP_AJ_G0033295.1 mouse_genomes_project 8 547509 551852 + Stxbp2 protein_coding processed_transcript MGP_AJ_T0088062.1 MGP_AJ_G0033295.1 mouse_genomes_project 8 547510 550282 + Stxbp2 protein_coding processed_transcript MGP_AJ_T0088063.1 MGP_AJ_G0033295.1 mouse_genomes_project 8 547510 551997 + Stxbp2 protein_coding processed_transcript MGP_AJ_T0088064.1 MGP_AJ_G0033295.1 mouse_genomes_project 8 547514 551093 + Stxbp2 protein_coding retained_intron MGP_AJ_T0088065.1 MGP_AJ_G0033295.1 mouse_genomes_project 8 547522 552100 + Stxbp2 protein_coding retained_intron MGP_AJ_T0088066.1 MGP_AJ_G0033295.1 mouse_genomes_project 8 547527 559159 + MGP_AJ_P0088066 Stxbp2 protein_coding protein_coding MGP_AJ_T0088067.1 MGP_AJ_G0033295.1 mouse_genomes_project 8 549272 550424 + Stxbp2 protein_coding retained_intron MGP_AJ_T0088068.1 MGP_AJ_G0033295.1 mouse_genomes_project 8 551773 552077 + Stxbp2 protein_coding retained_intron MGP_AJ_T0088069.1 MGP_AJ_G0033295.1 mouse_genomes_project 8 553523 557373 + Stxbp2 protein_coding processed_transcript MGP_AJ_T0088070.1 MGP_AJ_G0033295.1 mouse_genomes_project 8 555931 559158 + Stxbp2 protein_coding processed_transcript MGP_AJ_T0088071.1 MGP_AJ_G0033295.1 mouse_genomes_project 8 557075 558306 + Stxbp2 protein_coding retained_intron MGP_AJ_T0088072.1 MGP_AJ_G0033295.1 mouse_genomes_project 8 557132 558391 + Stxbp2 protein_coding retained_intron MGP_AJ_T0088073.1 MGP_AJ_G0033295.1 mouse_genomes_project 8 557205 559152 + Stxbp2 protein_coding retained_intron MGP_AJ_T0088074.1 MGP_AJ_G0033295.1 mouse_genomes_project 8 557980 559159 + Stxbp2 protein_coding retained_intron MGP_AJ_T0101504.1 MGP_AJ_G0039470.1 mouse_genomes_project 8 81923150 81923283 - Gm23626 snoRNA snoRNA MGP_AJ_T0089146.1 MGP_AJ_G0033650.1 mouse_genomes_project 8 66627045 66657549 + MGP_AJ_P0089146 D130040H23Rik protein_coding unknown_likely_coding MGP_AJ_T0089147.1 MGP_AJ_G0033650.1 mouse_genomes_project 8 66655244 66657631 + MGP_AJ_P0089147 D130040H23Rik protein_coding protein_coding MGP_AJ_T0090054.1 MGP_AJ_G0033927.1 mouse_genomes_project 8 90870239 90899972 - MGP_AJ_P0090054 Ces1e protein_coding protein_coding MGP_AJ_T0090055.1 MGP_AJ_G0033927.1 mouse_genomes_project 8 90870425 90899971 - MGP_AJ_P0090055 Ces1e protein_coding protein_coding MGP_AJ_T0090056.1 MGP_AJ_G0033927.1 mouse_genomes_project 8 90879791 90889143 - Ces1e protein_coding retained_intron MGP_AJ_T0088497.1 MGP_AJ_G0033452.1 mouse_genomes_project 8 21813274 21878542 - MGP_AJ_P0088497 Adam18 protein_coding protein_coding MGP_AJ_T0088498.1 MGP_AJ_G0033452.1 mouse_genomes_project 8 21813274 21878542 - MGP_AJ_P0088498 Adam18 protein_coding nonsense_mediated_decay MGP_AJ_T0088499.1 MGP_AJ_G0033452.1 mouse_genomes_project 8 21813278 21835479 - Adam18 protein_coding processed_transcript MGP_AJ_T0088314.1 MGP_AJ_G0033373.1 mouse_genomes_project 8 10923878 10949738 - MGP_AJ_P0088314 Tdrp protein_coding protein_coding MGP_AJ_T0088315.1 MGP_AJ_G0033373.1 mouse_genomes_project 8 10923999 10925257 - Tdrp protein_coding processed_transcript MGP_AJ_T0088316.1 MGP_AJ_G0033373.1 mouse_genomes_project 8 10925625 10933637 - Tdrp protein_coding processed_transcript MGP_AJ_T0088317.1 MGP_AJ_G0033373.1 mouse_genomes_project 8 10925982 10949993 - MGP_AJ_P0088317 Tdrp protein_coding protein_coding MGP_AJ_T0088318.1 MGP_AJ_G0033373.1 mouse_genomes_project 8 10947576 10949704 - Tdrp protein_coding retained_intron MGP_AJ_T0090371.1 MGP_AJ_G0034045.1 mouse_genomes_project 8 103874089 103886434 + MGP_AJ_P0090371 Edc4 protein_coding protein_coding MGP_AJ_T0090372.1 MGP_AJ_G0034045.1 mouse_genomes_project 8 103874159 103886417 + MGP_AJ_P0090372 Edc4 protein_coding protein_coding MGP_AJ_T0090373.1 MGP_AJ_G0034045.1 mouse_genomes_project 8 103874285 103888117 + MGP_AJ_P0090373 Edc4 protein_coding nonsense_mediated_decay MGP_AJ_T0090374.1 MGP_AJ_G0034045.1 mouse_genomes_project 8 103880177 103881354 + Edc4 protein_coding retained_intron MGP_AJ_T0090375.1 MGP_AJ_G0034045.1 mouse_genomes_project 8 103880586 103882741 + MGP_AJ_P0090375 Edc4 protein_coding protein_coding MGP_AJ_T0090376.1 MGP_AJ_G0034045.1 mouse_genomes_project 8 103880600 103881922 + MGP_AJ_P0090376 Edc4 protein_coding protein_coding MGP_AJ_T0090377.1 MGP_AJ_G0034045.1 mouse_genomes_project 8 103883476 103884537 + Edc4 protein_coding retained_intron MGP_AJ_T0090908.1 MGP_AJ_G0034211.1 mouse_genomes_project 8 120902669 120904941 - MGP_AJ_P0090908 Aprt protein_coding protein_coding MGP_AJ_T0088881.1 MGP_AJ_G0033571.1 mouse_genomes_project 8 43906204 43934160 + MGP_AJ_P0088881 Cenpu protein_coding nonsense_mediated_decay MGP_AJ_T0088882.1 MGP_AJ_G0033571.1 mouse_genomes_project 8 43906209 43933737 + MGP_AJ_P0088882 Cenpu protein_coding protein_coding MGP_AJ_T0088883.1 MGP_AJ_G0033571.1 mouse_genomes_project 8 43906210 43910386 + Cenpu protein_coding retained_intron MGP_AJ_T0088884.1 MGP_AJ_G0033571.1 mouse_genomes_project 8 43906236 43932521 + MGP_AJ_P0088884 Cenpu protein_coding protein_coding MGP_AJ_T0088885.1 MGP_AJ_G0033571.1 mouse_genomes_project 8 43914226 43916587 + Cenpu protein_coding processed_transcript MGP_AJ_T0088886.1 MGP_AJ_G0033571.1 mouse_genomes_project 8 43915857 43926983 + Cenpu protein_coding retained_intron MGP_AJ_T0088887.1 MGP_AJ_G0033571.1 mouse_genomes_project 8 43927325 43932531 + Cenpu protein_coding retained_intron MGP_AJ_T0010949.1 MGP_AJ_G0009071.1 mouse_genomes_project 8 10847253 10847347 + miRNA miRNA MGP_AJ_T0088550.1 MGP_AJ_G0033463.1 mouse_genomes_project 8 22802511 22877709 + MGP_AJ_P0088550 Whsc1l1 protein_coding protein_coding MGP_AJ_T0088551.1 MGP_AJ_G0033463.1 mouse_genomes_project 8 22803194 22875452 + Whsc1l1 protein_coding retained_intron MGP_AJ_T0088552.1 MGP_AJ_G0033463.1 mouse_genomes_project 8 22803194 22922483 + MGP_AJ_P0088552 Whsc1l1 protein_coding protein_coding MGP_AJ_T0088553.1 MGP_AJ_G0033463.1 mouse_genomes_project 8 22803194 22878467 + MGP_AJ_P0088553 Whsc1l1 protein_coding protein_coding MGP_AJ_T0088554.1 MGP_AJ_G0033463.1 mouse_genomes_project 8 22803194 22917784 + MGP_AJ_P0088554 Whsc1l1 protein_coding protein_coding MGP_AJ_T0088555.1 MGP_AJ_G0033463.1 mouse_genomes_project 8 22803229 22864152 + Whsc1l1 protein_coding retained_intron MGP_AJ_T0088556.1 MGP_AJ_G0033463.1 mouse_genomes_project 8 22841373 22922483 + MGP_AJ_P0088556 Whsc1l1 protein_coding protein_coding MGP_AJ_T0088557.1 MGP_AJ_G0033463.1 mouse_genomes_project 8 22874980 22878445 + Whsc1l1 protein_coding retained_intron MGP_AJ_T0088558.1 MGP_AJ_G0033463.1 mouse_genomes_project 8 22896063 22917784 + MGP_AJ_P0088558 Whsc1l1 protein_coding protein_coding MGP_AJ_T0088559.1 MGP_AJ_G0033463.1 mouse_genomes_project 8 22900458 22910877 + Whsc1l1 protein_coding retained_intron MGP_AJ_T0088560.1 MGP_AJ_G0033463.1 mouse_genomes_project 8 22901888 22902915 + Whsc1l1 protein_coding retained_intron MGP_AJ_T0089661.1 MGP_AJ_G0033815.1 mouse_genomes_project 8 81069772 81070868 + MGP_AJ_P0089661 Olfr370 protein_coding protein_coding MGP_AJ_T0090718.1 MGP_AJ_G0034167.1 mouse_genomes_project 8 117871601 117879691 - MGP_AJ_P0090718 Taf1c protein_coding protein_coding MGP_AJ_T0090719.1 MGP_AJ_G0034167.1 mouse_genomes_project 8 117871601 117879691 - MGP_AJ_P0090719 Taf1c protein_coding nonsense_mediated_decay MGP_AJ_T0090720.1 MGP_AJ_G0034167.1 mouse_genomes_project 8 117872445 117873472 - Taf1c protein_coding processed_transcript MGP_AJ_T0090721.1 MGP_AJ_G0034167.1 mouse_genomes_project 8 117873013 117874340 - Taf1c protein_coding retained_intron MGP_AJ_T0090722.1 MGP_AJ_G0034167.1 mouse_genomes_project 8 117873254 117875205 - Taf1c protein_coding processed_transcript MGP_AJ_T0088888.1 MGP_AJ_G0033572.1 mouse_genomes_project 8 43929731 43977985 - MGP_AJ_P0088888 Primpol protein_coding protein_coding MGP_AJ_T0088889.1 MGP_AJ_G0033572.1 mouse_genomes_project 8 43930314 43977985 - Primpol protein_coding retained_intron MGP_AJ_T0088890.1 MGP_AJ_G0033572.1 mouse_genomes_project 8 43933076 43977996 - MGP_AJ_P0088890 Primpol protein_coding unknown_likely_coding MGP_AJ_T0088891.1 MGP_AJ_G0033572.1 mouse_genomes_project 8 43947007 43953432 - Primpol protein_coding processed_transcript MGP_AJ_T0088892.1 MGP_AJ_G0033572.1 mouse_genomes_project 8 43965933 43973800 - MGP_AJ_P0088892 Primpol protein_coding protein_coding MGP_AJ_T0088893.1 MGP_AJ_G0033572.1 mouse_genomes_project 8 43971562 43977997 - Primpol protein_coding retained_intron MGP_AJ_T0009125.1 MGP_AJ_G0007338.1 mouse_genomes_project 8 78434227 78439465 - Gm27048 lincRNA lincRNA MGP_AJ_T0005368.1 MGP_AJ_G0004549.1 mouse_genomes_project 8 74972574 74974073 + 0610038B21Rik antisense antisense MGP_AJ_T0005369.1 MGP_AJ_G0004549.1 mouse_genomes_project 8 74973608 74979369 + 0610038B21Rik antisense antisense MGP_AJ_T0088032.1 MGP_AJ_G0033288.1 mouse_genomes_project 8 410670 425446 + MGP_AJ_P0088032 Mcoln1 protein_coding protein_coding MGP_AJ_T0088033.1 MGP_AJ_G0033288.1 mouse_genomes_project 8 410717 417155 + MGP_AJ_P0088033 Mcoln1 protein_coding protein_coding MGP_AJ_T0088034.1 MGP_AJ_G0033288.1 mouse_genomes_project 8 415992 425446 + Mcoln1 protein_coding retained_intron MGP_AJ_T0088035.1 MGP_AJ_G0033288.1 mouse_genomes_project 8 420880 423236 + Mcoln1 protein_coding retained_intron MGP_AJ_T0088036.1 MGP_AJ_G0033288.1 mouse_genomes_project 8 421809 423021 + Mcoln1 protein_coding retained_intron MGP_AJ_T0088037.1 MGP_AJ_G0033288.1 mouse_genomes_project 8 422895 425438 + Mcoln1 protein_coding retained_intron MGP_AJ_T0088038.1 MGP_AJ_G0033288.1 mouse_genomes_project 8 424775 425446 + Mcoln1 protein_coding retained_intron MGP_AJ_T0090619.1 MGP_AJ_G0034129.1 mouse_genomes_project 8 110060157 110081972 - MGP_AJ_P0090619 Tmem231 protein_coding protein_coding MGP_AJ_T0090311.1 MGP_AJ_G0034017.1 mouse_genomes_project 8 103267596 103273771 - MGP_AJ_P0090311 Exoc3l protein_coding protein_coding MGP_AJ_T0089829.1 MGP_AJ_G0033861.1 mouse_genomes_project 8 82448434 82451804 + MGP_AJ_P0089829 Klf1 protein_coding protein_coding MGP_AJ_T0009102.1 MGP_AJ_G0007317.1 mouse_genomes_project 8 31580550 31601835 + lincRNA lincRNA MGP_AJ_T0088604.1 MGP_AJ_G0033479.1 mouse_genomes_project 8 24242101 24257716 + MGP_AJ_P0088604 Erlin2 protein_coding protein_coding MGP_AJ_T0100234.1 MGP_AJ_G0038200.1 mouse_genomes_project 8 107898336 107898438 - Gm25321 snRNA snRNA MGP_AJ_T0101514.1 MGP_AJ_G0039480.1 mouse_genomes_project 8 99279651 99279776 - Gm22223 snoRNA snoRNA MGP_AJ_T0011000.1 MGP_AJ_G0009122.1 mouse_genomes_project 8 100540064 100540159 - Gm26301 miRNA miRNA MGP_AJ_T0088285.1 MGP_AJ_G0033360.1 mouse_genomes_project 8 10366453 10383033 + MGP_AJ_P0088285 Grk1 protein_coding protein_coding MGP_AJ_T0090660.1 MGP_AJ_G0034142.1 mouse_genomes_project 8 113902742 113927762 - MGP_AJ_P0090660 Maf protein_coding protein_coding MGP_AJ_T0090661.1 MGP_AJ_G0034142.1 mouse_genomes_project 8 113922114 113928460 - MGP_AJ_P0090661 Maf protein_coding protein_coding MGP_AJ_T0088158.1 MGP_AJ_G0033321.1 mouse_genomes_project 8 5505823 5549059 - MGP_AJ_P0088158 Efnb2 protein_coding protein_coding MGP_AJ_T0088159.1 MGP_AJ_G0033321.1 mouse_genomes_project 8 5508986 5527643 - MGP_AJ_P0088159 Efnb2 protein_coding protein_coding MGP_AJ_T0011715.1 MGP_AJ_G0009837.1 mouse_genomes_project 8 23449208 23449467 - Gm22227 misc_RNA misc_RNA MGP_AJ_T0090994.1 MGP_AJ_G0034235.1 mouse_genomes_project 8 121767765 121778740 + MGP_AJ_P0090994 Tubb3 protein_coding protein_coding MGP_AJ_T0090958.1 MGP_AJ_G0034228.1 mouse_genomes_project 8 121579349 121583322 - MGP_AJ_P0090958 Spata2l protein_coding protein_coding MGP_AJ_T0090959.1 MGP_AJ_G0034228.1 mouse_genomes_project 8 121579352 121583325 - MGP_AJ_P0090959 Spata2l protein_coding protein_coding MGP_AJ_T0090179.1 MGP_AJ_G0033966.1 mouse_genomes_project 8 93019448 93025265 - MGP_AJ_P0090179 Zfp319 protein_coding protein_coding MGP_AJ_T0009131.1 MGP_AJ_G0007343.1 mouse_genomes_project 8 81753334 81754021 + Gm26532 lincRNA lincRNA MGP_AJ_T0090092.1 MGP_AJ_G0033937.1 mouse_genomes_project 8 91818784 91820612 + MGP_AJ_P0090092 Mt4 protein_coding protein_coding MGP_AJ_T0089989.1 MGP_AJ_G0033903.1 mouse_genomes_project 8 86086278 86157493 + MGP_AJ_P0089989 Nkd1 protein_coding protein_coding MGP_AJ_T0010950.1 MGP_AJ_G0009072.1 mouse_genomes_project 8 11328739 11328847 + Gm44347 miRNA miRNA MGP_AJ_T0090685.1 MGP_AJ_G0034154.1 mouse_genomes_project 8 115748553 115889087 + MGP_AJ_P0090685 Plcg2 protein_coding protein_coding MGP_AJ_T0089849.1 MGP_AJ_G0033865.1 mouse_genomes_project 8 82503178 82517501 - MGP_AJ_P0089849 Rnaseh2a protein_coding protein_coding MGP_AJ_T0089850.1 MGP_AJ_G0033865.1 mouse_genomes_project 8 82503178 82513834 - MGP_AJ_P0089850 Rnaseh2a protein_coding protein_coding MGP_AJ_T0089851.1 MGP_AJ_G0033865.1 mouse_genomes_project 8 82504253 82513864 - MGP_AJ_P0089851 Rnaseh2a protein_coding protein_coding MGP_AJ_T0089852.1 MGP_AJ_G0033865.1 mouse_genomes_project 8 82504253 82513887 - MGP_AJ_P0089852 Rnaseh2a protein_coding protein_coding MGP_AJ_T0089853.1 MGP_AJ_G0033865.1 mouse_genomes_project 8 82504253 82517202 - MGP_AJ_P0089853 Rnaseh2a protein_coding protein_coding MGP_AJ_T0089854.1 MGP_AJ_G0033865.1 mouse_genomes_project 8 82504264 82504702 - Rnaseh2a protein_coding retained_intron MGP_AJ_T0089855.1 MGP_AJ_G0033865.1 mouse_genomes_project 8 82504559 82513784 - Rnaseh2a protein_coding retained_intron MGP_AJ_T0089856.1 MGP_AJ_G0033865.1 mouse_genomes_project 8 82513429 82517528 - MGP_AJ_P0089856 Rnaseh2a protein_coding protein_coding MGP_AJ_T0089857.1 MGP_AJ_G0033865.1 mouse_genomes_project 8 82513774 82514700 - MGP_AJ_P0089857 Rnaseh2a protein_coding protein_coding MGP_AJ_T0089858.1 MGP_AJ_G0033865.1 mouse_genomes_project 8 82514051 82517343 - Rnaseh2a protein_coding processed_transcript MGP_AJ_T0005403.1 MGP_AJ_G0004579.1 mouse_genomes_project 8 122686221 122687597 - 1810008B01Rik antisense antisense MGP_AJ_T0090381.1 MGP_AJ_G0034048.1 mouse_genomes_project 8 103930028 103931897 - MGP_AJ_P0090381 Ctrl protein_coding protein_coding MGP_AJ_T0005363.1 MGP_AJ_G0004545.1 mouse_genomes_project 8 65724200 65728058 + 1700125H03Rik antisense antisense MGP_AJ_T0005364.1 MGP_AJ_G0004545.1 mouse_genomes_project 8 65724232 65731479 + 1700125H03Rik antisense antisense MGP_AJ_T0090204.1 MGP_AJ_G0033976.1 mouse_genomes_project 8 93398511 93486307 - MGP_AJ_P0090204 Cnot1 protein_coding protein_coding MGP_AJ_T0090205.1 MGP_AJ_G0033976.1 mouse_genomes_project 8 93398511 93486307 - MGP_AJ_P0090205 Cnot1 protein_coding protein_coding MGP_AJ_T0088549.1 MGP_AJ_G0033462.1 mouse_genomes_project 8 22778817 22798382 - MGP_AJ_P0088549 Letm2 protein_coding unknown_likely_coding MGP_AJ_T0015977.1 MGP_AJ_G0014072.1 mouse_genomes_project 8 18892275 18898143 + processed_pseudogene processed_pseudogene MGP_AJ_T0088044.1 MGP_AJ_G0033291.1 mouse_genomes_project 8 501978 524656 + MGP_AJ_P0088044 Camsap3 protein_coding protein_coding MGP_AJ_T0088045.1 MGP_AJ_G0033291.1 mouse_genomes_project 8 501978 524656 + MGP_AJ_P0088045 Camsap3 protein_coding protein_coding MGP_AJ_T0088046.1 MGP_AJ_G0033291.1 mouse_genomes_project 8 502340 524631 + MGP_AJ_P0088046 Camsap3 protein_coding unknown_likely_coding MGP_AJ_T0005377.1 MGP_AJ_G0004557.1 mouse_genomes_project 8 102574275 102585452 + 1700082M22Rik antisense antisense MGP_AJ_T0005378.1 MGP_AJ_G0004557.1 mouse_genomes_project 8 102579550 102585312 + 1700082M22Rik antisense antisense MGP_AJ_T0091102.1 MGP_AJ_G0034275.1 mouse_genomes_project 8 125004590 125010273 - MGP_AJ_P0091102 Irf2bp2 protein_coding protein_coding MGP_AJ_T0016018.1 MGP_AJ_G0014113.1 mouse_genomes_project 8 80117833 80118791 + processed_pseudogene processed_pseudogene MGP_AJ_T0090771.1 MGP_AJ_G0034181.1 mouse_genomes_project 8 118860907 118872273 - Gins2 protein_coding retained_intron MGP_AJ_T0090772.1 MGP_AJ_G0034181.1 mouse_genomes_project 8 118860907 118872597 - MGP_AJ_P0090772 Gins2 protein_coding protein_coding MGP_AJ_T0090773.1 MGP_AJ_G0034181.1 mouse_genomes_project 8 118863818 118869014 - Gins2 protein_coding retained_intron MGP_AJ_T0090774.1 MGP_AJ_G0034181.1 mouse_genomes_project 8 118864429 118872327 - Gins2 protein_coding processed_transcript MGP_AJ_T0009111.1 MGP_AJ_G0007326.1 mouse_genomes_project 8 54801988 54825315 + 2500002B13Rik lincRNA lincRNA MGP_AJ_T0010982.1 MGP_AJ_G0009104.1 mouse_genomes_project 8 81723340 81723429 - Mir181c miRNA miRNA MGP_AJ_T0101474.1 MGP_AJ_G0039440.1 mouse_genomes_project 8 21884687 21884811 + Gm26208 snoRNA snoRNA MGP_AJ_T0005402.1 MGP_AJ_G0004578.1 mouse_genomes_project 8 122218640 122220913 - 2810455O05Rik antisense antisense MGP_AJ_T0088194.1 MGP_AJ_G0033339.1 mouse_genomes_project 8 8657050 8758176 + MGP_AJ_P0088194 Arhgef7 protein_coding protein_coding MGP_AJ_T0088195.1 MGP_AJ_G0033339.1 mouse_genomes_project 8 8657197 8759834 + MGP_AJ_P0088195 Arhgef7 protein_coding protein_coding MGP_AJ_T0088196.1 MGP_AJ_G0033339.1 mouse_genomes_project 8 8712856 8770334 + MGP_AJ_P0088196 Arhgef7 protein_coding protein_coding MGP_AJ_T0088197.1 MGP_AJ_G0033339.1 mouse_genomes_project 8 8747483 8751460 + Arhgef7 protein_coding processed_transcript MGP_AJ_T0088198.1 MGP_AJ_G0033339.1 mouse_genomes_project 8 8765352 8767415 + Arhgef7 protein_coding processed_transcript MGP_AJ_T0099104.1 MGP_AJ_G0037076.1 mouse_genomes_project 8 121385011 121387148 + 2810013P06Rik sense_intronic sense_intronic MGP_AJ_T0018482.1 MGP_AJ_G0015698.1 mouse_genomes_project 8 82600750 82607871 - A230103J11Rik processed_transcript processed_transcript MGP_AJ_T0018483.1 MGP_AJ_G0015698.1 mouse_genomes_project 8 82600779 82607854 - A230103J11Rik processed_transcript processed_transcript MGP_AJ_T0090117.1 MGP_AJ_G0033947.1 mouse_genomes_project 8 92289842 92342508 + MGP_AJ_P0090117 Rspry1 protein_coding protein_coding MGP_AJ_T0090118.1 MGP_AJ_G0033947.1 mouse_genomes_project 8 92289865 92307763 + MGP_AJ_P0090118 Rspry1 protein_coding protein_coding MGP_AJ_T0090119.1 MGP_AJ_G0033947.1 mouse_genomes_project 8 92310868 92314422 + Rspry1 protein_coding retained_intron MGP_AJ_T0091061.1 MGP_AJ_G0034259.1 mouse_genomes_project 8 123219429 123236475 - MGP_AJ_P0091061 2810004N23Rik protein_coding protein_coding MGP_AJ_T0088525.1 MGP_AJ_G0033458.1 mouse_genomes_project 8 22217190 22230810 - MGP_AJ_P0088525 Htra4 protein_coding protein_coding MGP_AJ_T0088526.1 MGP_AJ_G0033458.1 mouse_genomes_project 8 22221395 22229178 - Htra4 protein_coding retained_intron MGP_AJ_T0089950.1 MGP_AJ_G0033892.1 mouse_genomes_project 8 84257675 84280368 - MGP_AJ_P0089950 Siah1a protein_coding protein_coding MGP_AJ_T0088388.1 MGP_AJ_G0033399.1 mouse_genomes_project 8 16162239 16165412 + MGP_AJ_P0088388 Defb46 protein_coding protein_coding MGP_AJ_T0090263.1 MGP_AJ_G0034001.1 mouse_genomes_project 8 102763794 102813994 + Ces2c protein_coding processed_transcript MGP_AJ_T0090264.1 MGP_AJ_G0034001.1 mouse_genomes_project 8 102769386 102813994 + Ces2c protein_coding processed_transcript MGP_AJ_T0090265.1 MGP_AJ_G0034001.1 mouse_genomes_project 8 102785040 102787580 + Ces2c protein_coding processed_transcript MGP_AJ_T0090266.1 MGP_AJ_G0034001.1 mouse_genomes_project 8 102785048 102813981 + MGP_AJ_P0090266 Ces2c protein_coding unknown_likely_coding MGP_AJ_T0016007.1 MGP_AJ_G0014102.1 mouse_genomes_project 8 73760829 73761837 + processed_pseudogene processed_pseudogene MGP_AJ_T0088948.1 MGP_AJ_G0033592.1 mouse_genomes_project 8 51477159 51576261 + MGP_AJ_P0088948 Vegfc protein_coding protein_coding MGP_AJ_T0015978.1 MGP_AJ_G0014073.1 mouse_genomes_project 8 18892275 18898143 + processed_pseudogene processed_pseudogene MGP_AJ_T0088205.1 MGP_AJ_G0033343.1 mouse_genomes_project 8 9494521 9512801 - MGP_AJ_P0088205 protein_coding protein_coding MGP_AJ_T0010971.1 MGP_AJ_G0009093.1 mouse_genomes_project 8 69107270 69107330 - Mir6769b miRNA miRNA MGP_AJ_T0090190.1 MGP_AJ_G0033974.1 mouse_genomes_project 8 93356438 93387828 + MGP_AJ_P0090190 Ndrg4 protein_coding protein_coding MGP_AJ_T0090191.1 MGP_AJ_G0033974.1 mouse_genomes_project 8 93357700 93393977 + MGP_AJ_P0090191 Ndrg4 protein_coding nonsense_mediated_decay MGP_AJ_T0090192.1 MGP_AJ_G0033974.1 mouse_genomes_project 8 93357802 93393990 + MGP_AJ_P0090192 Ndrg4 protein_coding protein_coding MGP_AJ_T0090193.1 MGP_AJ_G0033974.1 mouse_genomes_project 8 93385252 93389758 + Ndrg4 protein_coding processed_transcript MGP_AJ_T0090194.1 MGP_AJ_G0033974.1 mouse_genomes_project 8 93387793 93390256 + Ndrg4 protein_coding retained_intron MGP_AJ_T0090195.1 MGP_AJ_G0033974.1 mouse_genomes_project 8 93388584 93392945 + Ndrg4 protein_coding processed_transcript MGP_AJ_T0090196.1 MGP_AJ_G0033974.1 mouse_genomes_project 8 93389087 93390165 + Ndrg4 protein_coding retained_intron MGP_AJ_T0090197.1 MGP_AJ_G0033974.1 mouse_genomes_project 8 93390510 93392242 + Ndrg4 protein_coding retained_intron MGP_AJ_T0016023.1 MGP_AJ_G0014118.1 mouse_genomes_project 8 86725279 86725598 - processed_pseudogene processed_pseudogene MGP_AJ_T0090437.1 MGP_AJ_G0034071.1 mouse_genomes_project 8 104957349 105037816 + MGP_AJ_P0090437 Sntb2 protein_coding protein_coding MGP_AJ_T0091043.1 MGP_AJ_G0034253.1 mouse_genomes_project 8 122959639 123000734 + MGP_AJ_P0091043 Capn9 protein_coding protein_coding MGP_AJ_T0091044.1 MGP_AJ_G0034253.1 mouse_genomes_project 8 122959641 122972105 + MGP_AJ_P0091044 Capn9 protein_coding protein_coding MGP_AJ_T0091045.1 MGP_AJ_G0034253.1 mouse_genomes_project 8 122994795 122996637 + Capn9 protein_coding processed_transcript MGP_AJ_T0088369.1 MGP_AJ_G0033386.1 mouse_genomes_project 8 15762960 15800112 + MGP_AJ_P0088369 Agpat5 protein_coding protein_coding MGP_AJ_T0088370.1 MGP_AJ_G0033386.1 mouse_genomes_project 8 15763241 15798647 + MGP_AJ_P0088370 Agpat5 protein_coding unknown_likely_coding MGP_AJ_T0010977.1 MGP_AJ_G0009099.1 mouse_genomes_project 8 81471202 81471345 - Gm44330 miRNA miRNA MGP_AJ_T0009201.1 MGP_AJ_G0007391.1 mouse_genomes_project 8 119849902 119853899 + 1700030M09Rik lincRNA lincRNA MGP_AJ_T0009202.1 MGP_AJ_G0007391.1 mouse_genomes_project 8 119849908 119853191 + 1700030M09Rik lincRNA lincRNA MGP_AJ_T0098737.1 MGP_AJ_G0036721.1 mouse_genomes_project 8 33016861 33016975 + Gm22216 rRNA rRNA MGP_AJ_T0089436.1 MGP_AJ_G0033739.1 mouse_genomes_project 8 69066809 69070903 + MGP_AJ_P0089436 Pgls protein_coding protein_coding MGP_AJ_T0089437.1 MGP_AJ_G0033739.1 mouse_genomes_project 8 69066817 69075725 + MGP_AJ_P0089437 Pgls protein_coding nonsense_mediated_decay MGP_AJ_T0089438.1 MGP_AJ_G0033739.1 mouse_genomes_project 8 69066844 69070299 + Pgls protein_coding retained_intron MGP_AJ_T0089439.1 MGP_AJ_G0033739.1 mouse_genomes_project 8 69066870 69069745 + MGP_AJ_P0089439 Pgls protein_coding protein_coding MGP_AJ_T0089440.1 MGP_AJ_G0033739.1 mouse_genomes_project 8 69066924 69070903 + MGP_AJ_P0089440 Pgls protein_coding protein_coding MGP_AJ_T0018459.1 MGP_AJ_G0015692.1 mouse_genomes_project 8 46213292 46240343 + Gm19744 processed_transcript lincRNA MGP_AJ_T0018460.1 MGP_AJ_G0015692.1 mouse_genomes_project 8 46213349 46217114 + Gm19744 processed_transcript lincRNA MGP_AJ_T0018461.1 MGP_AJ_G0015692.1 mouse_genomes_project 8 46213424 46214737 + Gm19744 processed_transcript antisense MGP_AJ_T0018462.1 MGP_AJ_G0015692.1 mouse_genomes_project 8 46213668 46214142 + Gm19744 processed_transcript retained_intron MGP_AJ_T0018463.1 MGP_AJ_G0015692.1 mouse_genomes_project 8 46213730 46214236 + Gm19744 processed_transcript antisense MGP_AJ_T0018464.1 MGP_AJ_G0015692.1 mouse_genomes_project 8 46224996 46241228 + Gm19744 processed_transcript lincRNA MGP_AJ_T0088387.1 MGP_AJ_G0033398.1 mouse_genomes_project 8 16146194 16148925 + MGP_AJ_P0088387 Defb6 protein_coding protein_coding MGP_AJ_T0088284.1 MGP_AJ_G0033359.1 mouse_genomes_project 8 10349239 10358138 - MGP_AJ_P0088284 Atp4b protein_coding protein_coding MGP_AJ_T0088440.1 MGP_AJ_G0033435.1 mouse_genomes_project 8 19815702 19819219 + MGP_AJ_P0088440 Dkk4 protein_coding protein_coding MGP_AJ_T0088755.1 MGP_AJ_G0033539.1 mouse_genomes_project 8 38140281 38143557 + MGP_AJ_P0088755 protein_coding protein_coding MGP_AJ_T0011001.1 MGP_AJ_G0009123.1 mouse_genomes_project 8 102636365 102636440 - Gm44328 miRNA miRNA MGP_AJ_T0101503.1 MGP_AJ_G0039469.1 mouse_genomes_project 8 79928722 79928858 + Gm25138 snoRNA snoRNA MGP_AJ_T0089991.1 MGP_AJ_G0033905.1 mouse_genomes_project 8 86213386 86256058 + MGP_AJ_P0089991 Nod2 protein_coding protein_coding MGP_AJ_T0089992.1 MGP_AJ_G0033905.1 mouse_genomes_project 8 86213455 86232458 + Nod2 protein_coding retained_intron MGP_AJ_T0089993.1 MGP_AJ_G0033905.1 mouse_genomes_project 8 86213642 86261508 + MGP_AJ_P0089993 Nod2 protein_coding unknown_likely_coding MGP_AJ_T0089994.1 MGP_AJ_G0033905.1 mouse_genomes_project 8 86217412 86256058 + MGP_AJ_P0089994 Nod2 protein_coding protein_coding MGP_AJ_T0005383.1 MGP_AJ_G0004561.1 mouse_genomes_project 8 106958140 106961686 - Gm20686 antisense antisense MGP_AJ_T0088625.1 MGP_AJ_G0033492.1 mouse_genomes_project 8 28312955 28320533 + MGP_AJ_P0088625 Dusp26 protein_coding protein_coding MGP_AJ_T0088626.1 MGP_AJ_G0033492.1 mouse_genomes_project 8 28313120 28320532 + MGP_AJ_P0088626 Dusp26 protein_coding protein_coding MGP_AJ_T0088627.1 MGP_AJ_G0033492.1 mouse_genomes_project 8 28313286 28315693 + Dusp26 protein_coding retained_intron MGP_AJ_T0088628.1 MGP_AJ_G0033492.1 mouse_genomes_project 8 28315110 28320532 + MGP_AJ_P0088628 Dusp26 protein_coding protein_coding MGP_AJ_T0088629.1 MGP_AJ_G0033492.1 mouse_genomes_project 8 28317458 28320075 + Dusp26 protein_coding processed_transcript MGP_AJ_T0005343.1 MGP_AJ_G0004528.1 mouse_genomes_project 8 23289873 23309606 + 1700047A11Rik antisense antisense MGP_AJ_T0005344.1 MGP_AJ_G0004528.1 mouse_genomes_project 8 23289880 23296560 + 1700047A11Rik antisense antisense MGP_AJ_T0090004.1 MGP_AJ_G0033911.1 mouse_genomes_project 8 88493523 88494000 - MGP_AJ_P0090004 protein_coding protein_coding MGP_AJ_T0091062.1 MGP_AJ_G0034260.1 mouse_genomes_project 8 123236478 123268715 + MGP_AJ_P0091062 Gnpat protein_coding protein_coding MGP_AJ_T0091063.1 MGP_AJ_G0034260.1 mouse_genomes_project 8 123236517 123265396 + MGP_AJ_P0091063 Gnpat protein_coding protein_coding MGP_AJ_T0091064.1 MGP_AJ_G0034260.1 mouse_genomes_project 8 123262087 123265718 + Gnpat protein_coding retained_intron MGP_AJ_T0091065.1 MGP_AJ_G0034260.1 mouse_genomes_project 8 123262156 123268211 + Gnpat protein_coding retained_intron MGP_AJ_T0091066.1 MGP_AJ_G0034260.1 mouse_genomes_project 8 123264156 123265575 + Gnpat protein_coding retained_intron MGP_AJ_T0091067.1 MGP_AJ_G0034260.1 mouse_genomes_project 8 123266309 123268281 + Gnpat protein_coding retained_intron MGP_AJ_T0090732.1 MGP_AJ_G0034174.1 mouse_genomes_project 8 118141664 118157392 + MGP_AJ_P0090732 Klhl36 protein_coding protein_coding MGP_AJ_T0089623.1 MGP_AJ_G0033801.1 mouse_genomes_project 8 78188038 78232335 - protein_coding processed_transcript MGP_AJ_T0089624.1 MGP_AJ_G0033801.1 mouse_genomes_project 8 78191983 78194256 - protein_coding retained_intron MGP_AJ_T0089625.1 MGP_AJ_G0033801.1 mouse_genomes_project 8 78192295 78193419 - protein_coding retained_intron MGP_AJ_T0089626.1 MGP_AJ_G0033801.1 mouse_genomes_project 8 78202816 78205480 - protein_coding retained_intron MGP_AJ_T0089627.1 MGP_AJ_G0033801.1 mouse_genomes_project 8 78217586 78218668 - protein_coding retained_intron MGP_AJ_T0016036.1 MGP_AJ_G0014131.1 mouse_genomes_project 8 115366148 115366552 + processed_pseudogene processed_pseudogene MGP_AJ_T0088967.1 MGP_AJ_G0033600.1 mouse_genomes_project 8 53632402 53659238 + MGP_AJ_P0088967 Hpgd protein_coding protein_coding MGP_AJ_T0100230.1 MGP_AJ_G0038196.1 mouse_genomes_project 8 100269630 100269693 + Gm24602 snRNA snRNA MGP_AJ_T0101475.1 MGP_AJ_G0039441.1 mouse_genomes_project 8 22811236 22811367 - Gm23184 snoRNA snoRNA MGP_AJ_T0090231.1 MGP_AJ_G0033988.1 mouse_genomes_project 8 102226623 102236827 + MGP_AJ_P0090231 Cmtm2b protein_coding protein_coding MGP_AJ_T0090640.1 MGP_AJ_G0034137.1 mouse_genomes_project 8 111859541 112012664 - MGP_AJ_P0090640 Adamts18 protein_coding protein_coding MGP_AJ_T0088942.1 MGP_AJ_G0033591.1 mouse_genomes_project 8 50980659 51033537 - MGP_AJ_P0088942 Neil3 protein_coding protein_coding MGP_AJ_T0088943.1 MGP_AJ_G0033591.1 mouse_genomes_project 8 50999048 51005923 - Neil3 protein_coding processed_transcript MGP_AJ_T0088944.1 MGP_AJ_G0033591.1 mouse_genomes_project 8 50999048 51005977 - MGP_AJ_P0088944 Neil3 protein_coding protein_coding MGP_AJ_T0088945.1 MGP_AJ_G0033591.1 mouse_genomes_project 8 50999074 51007058 - MGP_AJ_P0088945 Neil3 protein_coding protein_coding MGP_AJ_T0088946.1 MGP_AJ_G0033591.1 mouse_genomes_project 8 50999728 51033438 - Neil3 protein_coding retained_intron MGP_AJ_T0088947.1 MGP_AJ_G0033591.1 mouse_genomes_project 8 51004002 51033150 - MGP_AJ_P0088947 Neil3 protein_coding protein_coding MGP_AJ_T0088267.1 MGP_AJ_G0033354.1 mouse_genomes_project 8 10129815 10153376 - MGP_AJ_P0088267 Grtp1 protein_coding protein_coding MGP_AJ_T0018455.1 MGP_AJ_G0015689.1 mouse_genomes_project 8 38529941 38532645 + Gm16348 processed_transcript processed_transcript MGP_AJ_T0018456.1 MGP_AJ_G0015689.1 mouse_genomes_project 8 38529942 38532277 + Gm16348 processed_transcript processed_transcript MGP_AJ_T0091071.1 MGP_AJ_G0034264.1 mouse_genomes_project 8 123394356 123412469 + MGP_AJ_P0091071 Tsnax protein_coding protein_coding MGP_AJ_T0090561.1 MGP_AJ_G0034112.1 mouse_genomes_project 8 109115586 109145037 - MGP_AJ_P0090561 Ddx19b protein_coding protein_coding MGP_AJ_T0090562.1 MGP_AJ_G0034112.1 mouse_genomes_project 8 109117623 109140495 - MGP_AJ_P0090562 Ddx19b protein_coding protein_coding MGP_AJ_T0089801.1 MGP_AJ_G0033854.1 mouse_genomes_project 8 82375203 82379304 + MGP_AJ_P0089801 Gadd45gip1 protein_coding protein_coding MGP_AJ_T0088354.1 MGP_AJ_G0033383.1 mouse_genomes_project 8 12860017 14469897 - MGP_AJ_P0088354 Csmd1 protein_coding protein_coding MGP_AJ_T0088355.1 MGP_AJ_G0033383.1 mouse_genomes_project 8 12860025 12951215 - Csmd1 protein_coding retained_intron MGP_AJ_T0088356.1 MGP_AJ_G0033383.1 mouse_genomes_project 8 13040881 14469897 - Csmd1 protein_coding processed_transcript MGP_AJ_T0088357.1 MGP_AJ_G0033383.1 mouse_genomes_project 8 13243058 14469897 - Csmd1 protein_coding retained_intron MGP_AJ_T0088358.1 MGP_AJ_G0033383.1 mouse_genomes_project 8 13300595 14470202 - Csmd1 protein_coding processed_transcript MGP_AJ_T0088359.1 MGP_AJ_G0033383.1 mouse_genomes_project 8 14154561 14470001 - Csmd1 protein_coding retained_intron MGP_AJ_T0088360.1 MGP_AJ_G0033383.1 mouse_genomes_project 8 14308702 14469993 - Csmd1 protein_coding processed_transcript MGP_AJ_T0090270.1 MGP_AJ_G0034004.1 mouse_genomes_project 8 102939024 102946808 + MGP_AJ_P0090270 Ces2g protein_coding protein_coding MGP_AJ_T0009115.1 MGP_AJ_G0007330.1 mouse_genomes_project 8 65467138 65488687 - lincRNA lincRNA MGP_AJ_T0009116.1 MGP_AJ_G0007330.1 mouse_genomes_project 8 65487724 65488901 - lincRNA lincRNA MGP_AJ_T0009203.1 MGP_AJ_G0007392.1 mouse_genomes_project 8 119974268 119974732 + Gm27030 lincRNA lincRNA MGP_AJ_T0089352.1 MGP_AJ_G0033710.1 mouse_genomes_project 8 68182770 68197074 - MGP_AJ_P0089352 Mast3 protein_coding protein_coding MGP_AJ_T0018445.1 MGP_AJ_G0015683.1 mouse_genomes_project 8 4737871 4739841 + Gm28262 processed_transcript lincRNA MGP_AJ_T0018446.1 MGP_AJ_G0015683.1 mouse_genomes_project 8 4739804 4745335 + Gm28262 processed_transcript TEC MGP_AJ_T0090909.1 MGP_AJ_G0034212.1 mouse_genomes_project 8 120906400 120941463 - MGP_AJ_P0090909 Galns protein_coding protein_coding MGP_AJ_T0009121.1 MGP_AJ_G0007335.1 mouse_genomes_project 8 72082082 72314257 - lincRNA lincRNA MGP_AJ_T0009122.1 MGP_AJ_G0007335.1 mouse_genomes_project 8 72308319 72314230 - lincRNA lincRNA MGP_AJ_T0005360.1 MGP_AJ_G0004542.1 mouse_genomes_project 8 63704994 63707908 - Gm15354 antisense antisense MGP_AJ_T0010972.1 MGP_AJ_G0009094.1 mouse_genomes_project 8 70004038 70004112 - Mir7068 miRNA miRNA MGP_AJ_T0089608.1 MGP_AJ_G0033794.1 mouse_genomes_project 8 76813661 76875549 - MGP_AJ_P0089608 Smad1 protein_coding protein_coding MGP_AJ_T0089609.1 MGP_AJ_G0033794.1 mouse_genomes_project 8 76816842 76875549 - MGP_AJ_P0089609 Smad1 protein_coding protein_coding MGP_AJ_T0089610.1 MGP_AJ_G0033794.1 mouse_genomes_project 8 76830626 76875549 - MGP_AJ_P0089610 Smad1 protein_coding protein_coding MGP_AJ_T0090940.1 MGP_AJ_G0034222.1 mouse_genomes_project 8 121463731 121482056 + Cpne7 protein_coding retained_intron MGP_AJ_T0090941.1 MGP_AJ_G0034222.1 mouse_genomes_project 8 121463735 121482058 + MGP_AJ_P0090941 Cpne7 protein_coding protein_coding MGP_AJ_T0090942.1 MGP_AJ_G0034222.1 mouse_genomes_project 8 121463804 121482058 + Cpne7 protein_coding retained_intron MGP_AJ_T0090943.1 MGP_AJ_G0034222.1 mouse_genomes_project 8 121473187 121474044 + Cpne7 protein_coding processed_transcript MGP_AJ_T0090944.1 MGP_AJ_G0034222.1 mouse_genomes_project 8 121475391 121478641 + Cpne7 protein_coding retained_intron MGP_AJ_T0088787.1 MGP_AJ_G0033547.1 mouse_genomes_project 8 40454885 40466924 - MGP_AJ_P0088787 Triml1 protein_coding protein_coding MGP_AJ_T0088842.1 MGP_AJ_G0033563.1 mouse_genomes_project 8 43316209 43337574 + MGP_AJ_P0088842 Ufsp2 protein_coding protein_coding MGP_AJ_T0088843.1 MGP_AJ_G0033563.1 mouse_genomes_project 8 43316215 43337473 + Ufsp2 protein_coding retained_intron MGP_AJ_T0088844.1 MGP_AJ_G0033563.1 mouse_genomes_project 8 43316225 43321547 + Ufsp2 protein_coding retained_intron MGP_AJ_T0088845.1 MGP_AJ_G0033563.1 mouse_genomes_project 8 43316231 43326053 + Ufsp2 protein_coding processed_transcript MGP_AJ_T0088846.1 MGP_AJ_G0033563.1 mouse_genomes_project 8 43316259 43321064 + Ufsp2 protein_coding processed_transcript MGP_AJ_T0088847.1 MGP_AJ_G0033563.1 mouse_genomes_project 8 43335743 43337476 + Ufsp2 protein_coding retained_intron MGP_AJ_T0090430.1 MGP_AJ_G0034067.1 mouse_genomes_project 8 104686112 104870739 + MGP_AJ_P0090430 Tango6 protein_coding protein_coding MGP_AJ_T0090424.1 MGP_AJ_G0034063.1 mouse_genomes_project 8 104430360 104440978 + MGP_AJ_P0090424 Zfp90 protein_coding protein_coding MGP_AJ_T0090395.1 MGP_AJ_G0034054.1 mouse_genomes_project 8 103992456 104017409 + MGP_AJ_P0090395 Dus2 protein_coding protein_coding MGP_AJ_T0090397.1 MGP_AJ_G0034054.1 mouse_genomes_project 8 104012933 104055738 + MGP_AJ_P0090397 Dus2 protein_coding nonsense_mediated_decay MGP_AJ_T0090398.1 MGP_AJ_G0034054.1 mouse_genomes_project 8 104012933 104055717 + MGP_AJ_P0090398 Dus2 protein_coding protein_coding MGP_AJ_T0090399.1 MGP_AJ_G0034054.1 mouse_genomes_project 8 104012948 104032692 + Dus2 protein_coding retained_intron MGP_AJ_T0090400.1 MGP_AJ_G0034054.1 mouse_genomes_project 8 104035321 104047963 + Dus2 protein_coding retained_intron MGP_AJ_T0090401.1 MGP_AJ_G0034054.1 mouse_genomes_project 8 104050490 104054097 + Dus2 protein_coding retained_intron MGP_AJ_T0100201.1 MGP_AJ_G0038167.1 mouse_genomes_project 8 25016523 25016626 - Gm24202 snRNA snRNA MGP_AJ_T0090116.1 MGP_AJ_G0033946.1 mouse_genomes_project 8 92263073 92289614 - MGP_AJ_P0090116 Fam192a protein_coding protein_coding MGP_AJ_T0088918.1 MGP_AJ_G0033582.1 mouse_genomes_project 8 45060916 45065504 - MGP_AJ_P0088918 Cdkn2aip protein_coding protein_coding MGP_AJ_T0015964.1 MGP_AJ_G0014059.1 mouse_genomes_project 8 10030897 10031819 + processed_pseudogene processed_pseudogene MGP_AJ_T0089792.1 MGP_AJ_G0033850.1 mouse_genomes_project 8 82242336 82250598 - Nfix protein_coding processed_transcript MGP_AJ_T0089794.1 MGP_AJ_G0033850.1 mouse_genomes_project 8 82247169 82250096 - Nfix protein_coding processed_transcript MGP_AJ_T0089795.1 MGP_AJ_G0033850.1 mouse_genomes_project 8 82247170 82315479 - MGP_AJ_P0089795 Nfix protein_coding protein_coding MGP_AJ_T0089796.1 MGP_AJ_G0033850.1 mouse_genomes_project 8 82250993 82343012 - MGP_AJ_P0089796 Nfix protein_coding protein_coding MGP_AJ_T0089797.1 MGP_AJ_G0033850.1 mouse_genomes_project 8 82251014 82256427 - Nfix protein_coding retained_intron MGP_AJ_T0089798.1 MGP_AJ_G0033850.1 mouse_genomes_project 8 82256153 82342689 - MGP_AJ_P0089798 Nfix protein_coding protein_coding MGP_AJ_T0101501.1 MGP_AJ_G0039467.1 mouse_genomes_project 8 73492943 73493070 - Gm22544 snoRNA snoRNA MGP_AJ_T0090724.1 MGP_AJ_G0034169.1 mouse_genomes_project 8 117898213 117909706 - MGP_AJ_P0090724 Kcng4 protein_coding protein_coding MGP_AJ_T0090725.1 MGP_AJ_G0034169.1 mouse_genomes_project 8 117898213 117910040 - MGP_AJ_P0090725 Kcng4 protein_coding protein_coding MGP_AJ_T0016011.1 MGP_AJ_G0014106.1 mouse_genomes_project 8 77199074 77200017 + processed_pseudogene processed_pseudogene MGP_AJ_T0009171.1 MGP_AJ_G0007368.1 mouse_genomes_project 8 92061900 92063602 + Gm15889 lincRNA lincRNA MGP_AJ_T0088752.1 MGP_AJ_G0033536.1 mouse_genomes_project 8 37977365 37984383 + MGP_AJ_P0088752 Adam24 protein_coding protein_coding MGP_AJ_T0089574.1 MGP_AJ_G0033783.1 mouse_genomes_project 8 75005960 75036582 + MGP_AJ_P0089574 Prmt9 protein_coding protein_coding MGP_AJ_T0089575.1 MGP_AJ_G0033783.1 mouse_genomes_project 8 75005970 75020208 + Prmt9 protein_coding retained_intron MGP_AJ_T0089576.1 MGP_AJ_G0033783.1 mouse_genomes_project 8 75005973 75036582 + MGP_AJ_P0089576 Prmt9 protein_coding protein_coding MGP_AJ_T0089577.1 MGP_AJ_G0033783.1 mouse_genomes_project 8 75019893 75021322 + Prmt9 protein_coding retained_intron MGP_AJ_T0090662.1 MGP_AJ_G0034143.1 mouse_genomes_project 8 114737469 114748349 + MGP_AJ_P0090662 Dynlrb2 protein_coding protein_coding MGP_AJ_T0009186.1 MGP_AJ_G0007378.1 mouse_genomes_project 8 108965931 109045571 - Gm26816 lincRNA lincRNA MGP_AJ_T0101467.1 MGP_AJ_G0039433.1 mouse_genomes_project 8 15423468 15423599 - Gm24469 snoRNA snoRNA MGP_AJ_T0088981.1 MGP_AJ_G0033606.1 mouse_genomes_project 8 54828290 54832903 + MGP_AJ_P0088981 protein_coding protein_coding MGP_AJ_T0015997.1 MGP_AJ_G0014092.1 mouse_genomes_project 8 49696317 49697290 - processed_pseudogene processed_pseudogene MGP_AJ_T0090000.1 MGP_AJ_G0033909.1 mouse_genomes_project 8 87831490 87936769 - MGP_AJ_P0090000 Tox3 protein_coding protein_coding MGP_AJ_T0090001.1 MGP_AJ_G0033909.1 mouse_genomes_project 8 87837156 87936557 - MGP_AJ_P0090001 Tox3 protein_coding protein_coding MGP_AJ_T0090002.1 MGP_AJ_G0033909.1 mouse_genomes_project 8 87842073 87936552 - MGP_AJ_P0090002 Tox3 protein_coding protein_coding MGP_AJ_T0011012.1 MGP_AJ_G0009134.1 mouse_genomes_project 8 109155385 109155462 - Gm24103 miRNA miRNA MGP_AJ_T0089547.1 MGP_AJ_G0033774.1 mouse_genomes_project 8 72354252 72373968 + MGP_AJ_P0089547 Isx protein_coding protein_coding MGP_AJ_T0089548.1 MGP_AJ_G0033774.1 mouse_genomes_project 8 72354619 72373609 + MGP_AJ_P0089548 Isx protein_coding protein_coding MGP_AJ_T0089003.1 MGP_AJ_G0033613.1 mouse_genomes_project 8 58195409 58213201 + MGP_AJ_P0089003 Hpf1 protein_coding nonsense_mediated_decay MGP_AJ_T0089004.1 MGP_AJ_G0033613.1 mouse_genomes_project 8 58195436 58213199 + MGP_AJ_P0089004 Hpf1 protein_coding nonsense_mediated_decay MGP_AJ_T0089005.1 MGP_AJ_G0033613.1 mouse_genomes_project 8 58195442 58213206 + MGP_AJ_P0089005 Hpf1 protein_coding protein_coding MGP_AJ_T0089006.1 MGP_AJ_G0033613.1 mouse_genomes_project 8 58195442 58211611 + MGP_AJ_P0089006 Hpf1 protein_coding nonsense_mediated_decay MGP_AJ_T0089007.1 MGP_AJ_G0033613.1 mouse_genomes_project 8 58195480 58202044 + Hpf1 protein_coding retained_intron MGP_AJ_T0091021.1 MGP_AJ_G0034245.1 mouse_genomes_project 8 122280953 122333352 - MGP_AJ_P0091021 Nup133 protein_coding protein_coding MGP_AJ_T0089109.1 MGP_AJ_G0033643.1 mouse_genomes_project 8 65712559 66074099 - MGP_AJ_P0089109 Csgalnact1 protein_coding protein_coding MGP_AJ_T0089110.1 MGP_AJ_G0033643.1 mouse_genomes_project 8 65713742 66074067 - MGP_AJ_P0089110 Csgalnact1 protein_coding protein_coding MGP_AJ_T0089111.1 MGP_AJ_G0033643.1 mouse_genomes_project 8 65742701 66074055 - MGP_AJ_P0089111 Csgalnact1 protein_coding protein_coding MGP_AJ_T0089112.1 MGP_AJ_G0033643.1 mouse_genomes_project 8 65815335 66074068 - Csgalnact1 protein_coding processed_transcript MGP_AJ_T0089113.1 MGP_AJ_G0033643.1 mouse_genomes_project 8 65908694 66074067 - Csgalnact1 protein_coding processed_transcript MGP_AJ_T0089114.1 MGP_AJ_G0033643.1 mouse_genomes_project 8 65908793 66074068 - Csgalnact1 protein_coding processed_transcript MGP_AJ_T0089115.1 MGP_AJ_G0033643.1 mouse_genomes_project 8 65992456 66074068 - Csgalnact1 protein_coding processed_transcript MGP_AJ_T0009169.1 MGP_AJ_G0007366.1 mouse_genomes_project 8 89968189 89968622 - lincRNA lincRNA MGP_AJ_T0089250.1 MGP_AJ_G0033681.1 mouse_genomes_project 8 67676425 67680122 + MGP_AJ_P0089250 Homer3 protein_coding protein_coding MGP_AJ_T0089251.1 MGP_AJ_G0033681.1 mouse_genomes_project 8 67676425 67688020 + MGP_AJ_P0089251 Homer3 protein_coding protein_coding MGP_AJ_T0089252.1 MGP_AJ_G0033681.1 mouse_genomes_project 8 67676597 67688020 + MGP_AJ_P0089252 Homer3 protein_coding protein_coding MGP_AJ_T0089253.1 MGP_AJ_G0033681.1 mouse_genomes_project 8 67676632 67679894 + Homer3 protein_coding retained_intron MGP_AJ_T0089254.1 MGP_AJ_G0033681.1 mouse_genomes_project 8 67678837 67688012 + MGP_AJ_P0089254 Homer3 protein_coding protein_coding MGP_AJ_T0089255.1 MGP_AJ_G0033681.1 mouse_genomes_project 8 67679522 67685397 + Homer3 protein_coding retained_intron MGP_AJ_T0089256.1 MGP_AJ_G0033681.1 mouse_genomes_project 8 67682832 67685262 + Homer3 protein_coding retained_intron MGP_AJ_T0089257.1 MGP_AJ_G0033681.1 mouse_genomes_project 8 67684734 67687128 + MGP_AJ_P0089257 Homer3 protein_coding protein_coding MGP_AJ_T0090910.1 MGP_AJ_G0034213.1 mouse_genomes_project 8 120918889 120919259 + MGP_AJ_P0090910 protein_coding protein_coding MGP_AJ_T0098476.1 MGP_AJ_G0036460.1 mouse_genomes_project 8 32182664 32183819 + pseudogene pseudogene MGP_AJ_T0088640.1 MGP_AJ_G0033499.1 mouse_genomes_project 8 29201953 29264777 - MGP_AJ_P0088640 unknown_likely_coding unknown_likely_coding MGP_AJ_T0089075.1 MGP_AJ_G0033632.1 mouse_genomes_project 8 62894426 63791486 + protein_coding processed_transcript MGP_AJ_T0089076.1 MGP_AJ_G0033632.1 mouse_genomes_project 8 62894535 63790897 + MGP_AJ_P0089076 protein_coding protein_coding MGP_AJ_T0089077.1 MGP_AJ_G0033632.1 mouse_genomes_project 8 62894551 63791239 + MGP_AJ_P0089077 protein_coding protein_coding MGP_AJ_T0089078.1 MGP_AJ_G0033632.1 mouse_genomes_project 8 62894563 63254560 + protein_coding retained_intron MGP_AJ_T0089079.1 MGP_AJ_G0033632.1 mouse_genomes_project 8 62894612 63793163 + MGP_AJ_P0089079 protein_coding protein_coding MGP_AJ_T0089080.1 MGP_AJ_G0033632.1 mouse_genomes_project 8 62895051 63791953 + MGP_AJ_P0089080 protein_coding protein_coding MGP_AJ_T0089081.1 MGP_AJ_G0033632.1 mouse_genomes_project 8 63253388 63793151 + MGP_AJ_P0089081 protein_coding protein_coding MGP_AJ_T0089082.1 MGP_AJ_G0033632.1 mouse_genomes_project 8 63410044 63793151 + MGP_AJ_P0089082 protein_coding protein_coding MGP_AJ_T0089083.1 MGP_AJ_G0033632.1 mouse_genomes_project 8 63410044 63793151 + MGP_AJ_P0089083 protein_coding protein_coding MGP_AJ_T0089084.1 MGP_AJ_G0033632.1 mouse_genomes_project 8 63706666 63791947 + MGP_AJ_P0089084 protein_coding protein_coding MGP_AJ_T0089085.1 MGP_AJ_G0033632.1 mouse_genomes_project 8 63706673 63791957 + MGP_AJ_P0089085 protein_coding protein_coding MGP_AJ_T0090404.1 MGP_AJ_G0034057.1 mouse_genomes_project 8 104138729 104145385 - MGP_AJ_P0090404 Esrp2 protein_coding protein_coding MGP_AJ_T0090405.1 MGP_AJ_G0034057.1 mouse_genomes_project 8 104140635 104145224 - MGP_AJ_P0090405 Esrp2 protein_coding protein_coding MGP_AJ_T0090406.1 MGP_AJ_G0034057.1 mouse_genomes_project 8 104141138 104141486 - Esrp2 protein_coding processed_transcript MGP_AJ_T0090407.1 MGP_AJ_G0034057.1 mouse_genomes_project 8 104141225 104143135 - Esrp2 protein_coding retained_intron MGP_AJ_T0090408.1 MGP_AJ_G0034057.1 mouse_genomes_project 8 104141678 104142539 - Esrp2 protein_coding retained_intron MGP_AJ_T0090409.1 MGP_AJ_G0034057.1 mouse_genomes_project 8 104141938 104142539 - Esrp2 protein_coding retained_intron MGP_AJ_T0090410.1 MGP_AJ_G0034057.1 mouse_genomes_project 8 104142212 104143507 - Esrp2 protein_coding retained_intron MGP_AJ_T0090411.1 MGP_AJ_G0034057.1 mouse_genomes_project 8 104142369 104143352 - Esrp2 protein_coding retained_intron MGP_AJ_T0090412.1 MGP_AJ_G0034057.1 mouse_genomes_project 8 104144593 104145096 - Esrp2 protein_coding retained_intron MGP_AJ_T0088574.1 MGP_AJ_G0033469.1 mouse_genomes_project 8 23013325 23019589 + MGP_AJ_P0088574 Star protein_coding protein_coding MGP_AJ_T0088951.1 MGP_AJ_G0033595.1 mouse_genomes_project 8 51985463 51994765 + MGP_AJ_P0088951 Spata4 protein_coding protein_coding MGP_AJ_T0088999.1 MGP_AJ_G0033612.1 mouse_genomes_project 8 57940754 57982762 + MGP_AJ_P0088999 Mfap3l protein_coding protein_coding MGP_AJ_T0089000.1 MGP_AJ_G0033612.1 mouse_genomes_project 8 57940787 57984555 + MGP_AJ_P0089000 Mfap3l protein_coding protein_coding MGP_AJ_T0089001.1 MGP_AJ_G0033612.1 mouse_genomes_project 8 57962700 57980288 + MGP_AJ_P0089001 Mfap3l protein_coding protein_coding MGP_AJ_T0089002.1 MGP_AJ_G0033612.1 mouse_genomes_project 8 57963136 57980184 + MGP_AJ_P0089002 Mfap3l protein_coding protein_coding MGP_AJ_T0010998.1 MGP_AJ_G0009120.1 mouse_genomes_project 8 93432046 93432110 - Mir7073 miRNA miRNA MGP_AJ_T0089325.1 MGP_AJ_G0033697.1 mouse_genomes_project 8 67996704 68007608 - MGP_AJ_P0089325 Ssbp4 protein_coding protein_coding MGP_AJ_T0009180.1 MGP_AJ_G0007374.1 mouse_genomes_project 8 104293925 104311557 + Gm10629 lincRNA lincRNA MGP_AJ_T0009210.1 MGP_AJ_G0007397.1 mouse_genomes_project 8 122124808 122134621 - 4732419C18Rik lincRNA lincRNA MGP_AJ_T0090255.1 MGP_AJ_G0033998.1 mouse_genomes_project 8 102572307 102574434 - MGP_AJ_P0090255 Fam96b protein_coding protein_coding MGP_AJ_T0090256.1 MGP_AJ_G0033998.1 mouse_genomes_project 8 102572309 102574168 - Fam96b protein_coding retained_intron MGP_AJ_T0090257.1 MGP_AJ_G0033998.1 mouse_genomes_project 8 102572316 102574170 - MGP_AJ_P0090257 Fam96b protein_coding protein_coding MGP_AJ_T0089955.1 MGP_AJ_G0033896.1 mouse_genomes_project 8 85102560 85127948 + MGP_AJ_P0089955 4933402J07Rik protein_coding protein_coding MGP_AJ_T0090415.1 MGP_AJ_G0034060.1 mouse_genomes_project 8 104210166 104220970 - MGP_AJ_P0090415 Slc7a6os protein_coding protein_coding MGP_AJ_T0010996.1 MGP_AJ_G0009118.1 mouse_genomes_project 8 92008101 92008172 + Mir138-2 miRNA miRNA MGP_AJ_T0090577.1 MGP_AJ_G0034115.1 mouse_genomes_project 8 109209682 109254447 + MGP_AJ_P0090577 Pdpr protein_coding protein_coding MGP_AJ_T0090578.1 MGP_AJ_G0034115.1 mouse_genomes_project 8 109209696 109252520 + MGP_AJ_P0090578 Pdpr protein_coding nonsense_mediated_decay MGP_AJ_T0088084.1 MGP_AJ_G0033302.1 mouse_genomes_project 8 764900 771245 - MGP_AJ_P0088084 Cd209e protein_coding protein_coding MGP_AJ_T0089762.1 MGP_AJ_G0033849.1 mouse_genomes_project 8 82227561 82232188 + Trmt1 protein_coding retained_intron MGP_AJ_T0089763.1 MGP_AJ_G0033849.1 mouse_genomes_project 8 82227573 82228376 + Trmt1 protein_coding processed_transcript MGP_AJ_T0089764.1 MGP_AJ_G0033849.1 mouse_genomes_project 8 82227593 82232574 + MGP_AJ_P0089764 Trmt1 protein_coding protein_coding MGP_AJ_T0089765.1 MGP_AJ_G0033849.1 mouse_genomes_project 8 82230112 82242269 + MGP_AJ_P0089765 Trmt1 protein_coding protein_coding MGP_AJ_T0089766.1 MGP_AJ_G0033849.1 mouse_genomes_project 8 82230493 82242248 + MGP_AJ_P0089766 Trmt1 protein_coding protein_coding MGP_AJ_T0089767.1 MGP_AJ_G0033849.1 mouse_genomes_project 8 82230503 82231991 + Trmt1 protein_coding processed_transcript MGP_AJ_T0089768.1 MGP_AJ_G0033849.1 mouse_genomes_project 8 82230503 82232622 + Trmt1 protein_coding retained_intron MGP_AJ_T0089769.1 MGP_AJ_G0033849.1 mouse_genomes_project 8 82230503 82237988 + MGP_AJ_P0089769 Trmt1 protein_coding protein_coding MGP_AJ_T0089770.1 MGP_AJ_G0033849.1 mouse_genomes_project 8 82230510 82242247 + MGP_AJ_P0089770 Trmt1 protein_coding protein_coding MGP_AJ_T0089771.1 MGP_AJ_G0033849.1 mouse_genomes_project 8 82230515 82239378 + MGP_AJ_P0089771 Trmt1 protein_coding nonsense_mediated_decay MGP_AJ_T0089772.1 MGP_AJ_G0033849.1 mouse_genomes_project 8 82230518 82237759 + MGP_AJ_P0089772 Trmt1 protein_coding protein_coding MGP_AJ_T0089773.1 MGP_AJ_G0033849.1 mouse_genomes_project 8 82230529 82242269 + Trmt1 protein_coding retained_intron MGP_AJ_T0089774.1 MGP_AJ_G0033849.1 mouse_genomes_project 8 82230529 82232480 + Trmt1 protein_coding retained_intron MGP_AJ_T0089775.1 MGP_AJ_G0033849.1 mouse_genomes_project 8 82230530 82232063 + Trmt1 protein_coding retained_intron MGP_AJ_T0089776.1 MGP_AJ_G0033849.1 mouse_genomes_project 8 82230531 82231225 + Trmt1 protein_coding retained_intron MGP_AJ_T0089777.1 MGP_AJ_G0033849.1 mouse_genomes_project 8 82230532 82232060 + Trmt1 protein_coding processed_transcript MGP_AJ_T0089778.1 MGP_AJ_G0033849.1 mouse_genomes_project 8 82230532 82237931 + MGP_AJ_P0089778 Trmt1 protein_coding protein_coding MGP_AJ_T0089779.1 MGP_AJ_G0033849.1 mouse_genomes_project 8 82230532 82237907 + MGP_AJ_P0089779 Trmt1 protein_coding nonsense_mediated_decay MGP_AJ_T0089780.1 MGP_AJ_G0033849.1 mouse_genomes_project 8 82230535 82233311 + Trmt1 protein_coding processed_transcript MGP_AJ_T0089781.1 MGP_AJ_G0033849.1 mouse_genomes_project 8 82230714 82242246 + MGP_AJ_P0089781 Trmt1 protein_coding protein_coding MGP_AJ_T0089782.1 MGP_AJ_G0033849.1 mouse_genomes_project 8 82230727 82237697 + MGP_AJ_P0089782 Trmt1 protein_coding protein_coding MGP_AJ_T0089783.1 MGP_AJ_G0033849.1 mouse_genomes_project 8 82230882 82237988 + Trmt1 protein_coding processed_transcript MGP_AJ_T0089784.1 MGP_AJ_G0033849.1 mouse_genomes_project 8 82231640 82239585 + Trmt1 protein_coding processed_transcript MGP_AJ_T0089785.1 MGP_AJ_G0033849.1 mouse_genomes_project 8 82237379 82239889 + Trmt1 protein_coding retained_intron MGP_AJ_T0089786.1 MGP_AJ_G0033849.1 mouse_genomes_project 8 82239296 82239974 + Trmt1 protein_coding retained_intron MGP_AJ_T0089787.1 MGP_AJ_G0033849.1 mouse_genomes_project 8 82239427 82240713 + MGP_AJ_P0089787 Trmt1 protein_coding nonsense_mediated_decay MGP_AJ_T0089788.1 MGP_AJ_G0033849.1 mouse_genomes_project 8 82239774 82240407 + Trmt1 protein_coding retained_intron MGP_AJ_T0089789.1 MGP_AJ_G0033849.1 mouse_genomes_project 8 82240849 82242247 + MGP_AJ_P0089789 Trmt1 protein_coding protein_coding MGP_AJ_T0089790.1 MGP_AJ_G0033849.1 mouse_genomes_project 8 82241531 82242247 + Trmt1 protein_coding retained_intron MGP_AJ_T0089791.1 MGP_AJ_G0033849.1 mouse_genomes_project 8 82241641 82242112 + Trmt1 protein_coding retained_intron MGP_AJ_T0088690.1 MGP_AJ_G0033514.1 mouse_genomes_project 8 31549798 31550243 + MGP_AJ_P0088690 protein_coding protein_coding MGP_AJ_T0089285.1 MGP_AJ_G0033689.1 mouse_genomes_project 8 67880622 67884105 - MGP_AJ_P0089285 Tmem59l protein_coding protein_coding MGP_AJ_T0088500.1 MGP_AJ_G0033453.1 mouse_genomes_project 8 21881054 21895434 - MGP_AJ_P0088500 Adam3 protein_coding protein_coding MGP_AJ_T0088501.1 MGP_AJ_G0033453.1 mouse_genomes_project 8 21881061 21934718 - MGP_AJ_P0088501 Adam3 protein_coding protein_coding MGP_AJ_T0088502.1 MGP_AJ_G0033453.1 mouse_genomes_project 8 21881130 21934664 - MGP_AJ_P0088502 Adam3 protein_coding nonsense_mediated_decay MGP_AJ_T0088503.1 MGP_AJ_G0033453.1 mouse_genomes_project 8 21884592 21934654 - MGP_AJ_P0088503 Adam3 protein_coding protein_coding MGP_AJ_T0088504.1 MGP_AJ_G0033453.1 mouse_genomes_project 8 21914768 21934654 - MGP_AJ_P0088504 Adam3 protein_coding protein_coding MGP_AJ_T0088505.1 MGP_AJ_G0033453.1 mouse_genomes_project 8 21923264 21934651 - Adam3 protein_coding processed_transcript MGP_AJ_T0088506.1 MGP_AJ_G0033453.1 mouse_genomes_project 8 21923338 21934666 - Adam3 protein_coding processed_transcript MGP_AJ_T0088507.1 MGP_AJ_G0033453.1 mouse_genomes_project 8 21923339 21934691 - Adam3 protein_coding processed_transcript MGP_AJ_T0088508.1 MGP_AJ_G0033453.1 mouse_genomes_project 8 21923378 21934654 - MGP_AJ_P0088508 Adam3 protein_coding nonsense_mediated_decay MGP_AJ_T0088509.1 MGP_AJ_G0033453.1 mouse_genomes_project 8 21923403 21934648 - MGP_AJ_P0088509 Adam3 protein_coding nonsense_mediated_decay MGP_AJ_T0100216.1 MGP_AJ_G0038182.1 mouse_genomes_project 8 73741209 73741316 - Gm22509 snRNA snRNA MGP_AJ_T0088377.1 MGP_AJ_G0033389.1 mouse_genomes_project 8 15903511 15908331 - MGP_AJ_P0088377 Defb37 protein_coding protein_coding MGP_AJ_T0090614.1 MGP_AJ_G0034125.1 mouse_genomes_project 8 109854322 109875744 - MGP_AJ_P0090614 Bcar1 protein_coding unknown_likely_coding MGP_AJ_T0090615.1 MGP_AJ_G0034125.1 mouse_genomes_project 8 109854339 109887540 - MGP_AJ_P0090615 Bcar1 protein_coding protein_coding MGP_AJ_T0090082.1 MGP_AJ_G0033935.1 mouse_genomes_project 8 91715133 91748222 + MGP_AJ_P0090082 Ogfod1 protein_coding protein_coding MGP_AJ_T0090083.1 MGP_AJ_G0033935.1 mouse_genomes_project 8 91715173 91748222 + MGP_AJ_P0090083 Ogfod1 protein_coding protein_coding MGP_AJ_T0090084.1 MGP_AJ_G0033935.1 mouse_genomes_project 8 91715195 91717388 + Ogfod1 protein_coding retained_intron MGP_AJ_T0090085.1 MGP_AJ_G0033935.1 mouse_genomes_project 8 91715198 91737990 + Ogfod1 protein_coding processed_transcript MGP_AJ_T0090086.1 MGP_AJ_G0033935.1 mouse_genomes_project 8 91715226 91748222 + MGP_AJ_P0090086 Ogfod1 protein_coding protein_coding MGP_AJ_T0090087.1 MGP_AJ_G0033935.1 mouse_genomes_project 8 91715231 91736322 + Ogfod1 protein_coding processed_transcript MGP_AJ_T0090088.1 MGP_AJ_G0033935.1 mouse_genomes_project 8 91735269 91737991 + Ogfod1 protein_coding retained_intron MGP_AJ_T0011725.1 MGP_AJ_G0009847.1 mouse_genomes_project 8 92382575 92382845 - Gm22846 misc_RNA misc_RNA MGP_AJ_T0090870.1 MGP_AJ_G0034202.1 mouse_genomes_project 8 120698714 120740875 + MGP_AJ_P0090870 Zc3h18 protein_coding protein_coding MGP_AJ_T0090871.1 MGP_AJ_G0034202.1 mouse_genomes_project 8 120698748 120740876 + MGP_AJ_P0090871 Zc3h18 protein_coding protein_coding MGP_AJ_T0090872.1 MGP_AJ_G0034202.1 mouse_genomes_project 8 120698749 120706007 + MGP_AJ_P0090872 Zc3h18 protein_coding protein_coding MGP_AJ_T0090873.1 MGP_AJ_G0034202.1 mouse_genomes_project 8 120698753 120712123 + Zc3h18 protein_coding retained_intron MGP_AJ_T0090874.1 MGP_AJ_G0034202.1 mouse_genomes_project 8 120698786 120740875 + MGP_AJ_P0090874 Zc3h18 protein_coding protein_coding MGP_AJ_T0090875.1 MGP_AJ_G0034202.1 mouse_genomes_project 8 120705695 120740883 + MGP_AJ_P0090875 Zc3h18 protein_coding unknown_likely_coding MGP_AJ_T0090876.1 MGP_AJ_G0034202.1 mouse_genomes_project 8 120725799 120728649 + Zc3h18 protein_coding processed_transcript MGP_AJ_T0090877.1 MGP_AJ_G0034202.1 mouse_genomes_project 8 120725869 120734046 + MGP_AJ_P0090877 Zc3h18 protein_coding protein_coding MGP_AJ_T0090878.1 MGP_AJ_G0034202.1 mouse_genomes_project 8 120730364 120740875 + Zc3h18 protein_coding retained_intron MGP_AJ_T0090879.1 MGP_AJ_G0034202.1 mouse_genomes_project 8 120730539 120733426 + Zc3h18 protein_coding retained_intron MGP_AJ_T0090880.1 MGP_AJ_G0034202.1 mouse_genomes_project 8 120733967 120738891 + MGP_AJ_P0090880 Zc3h18 protein_coding protein_coding MGP_AJ_T0090234.1 MGP_AJ_G0033991.1 mouse_genomes_project 8 102327225 102352716 - MGP_AJ_P0090234 Dync1li2 protein_coding protein_coding MGP_AJ_T0089363.1 MGP_AJ_G0033719.1 mouse_genomes_project 8 68338349 68339982 + MGP_AJ_P0089363 protein_coding protein_coding MGP_AJ_T0088586.1 MGP_AJ_G0033474.1 mouse_genomes_project 8 23201889 23219135 - MGP_AJ_P0088586 Fnta protein_coding protein_coding MGP_AJ_T0010955.1 MGP_AJ_G0009077.1 mouse_genomes_project 8 20341743 20341833 - Mir3107 miRNA miRNA MGP_AJ_T0016038.1 MGP_AJ_G0014133.1 mouse_genomes_project 8 119887306 119887733 + processed_pseudogene processed_pseudogene MGP_AJ_T0091046.1 MGP_AJ_G0034254.1 mouse_genomes_project 8 123017820 123047091 - MGP_AJ_P0091046 2310022B05Rik protein_coding protein_coding MGP_AJ_T0088753.1 MGP_AJ_G0033537.1 mouse_genomes_project 8 38118682 38122030 + MGP_AJ_P0088753 Adam20 protein_coding protein_coding MGP_AJ_T0088378.1 MGP_AJ_G0033390.1 mouse_genomes_project 8 15939540 15942689 - MGP_AJ_P0088378 Defb38 protein_coding protein_coding MGP_AJ_T0090359.1 MGP_AJ_G0034036.1 mouse_genomes_project 8 103687527 103689867 + MGP_AJ_P0090359 Pard6a protein_coding protein_coding MGP_AJ_T0090360.1 MGP_AJ_G0034036.1 mouse_genomes_project 8 103688020 103689866 + MGP_AJ_P0090360 Pard6a protein_coding protein_coding MGP_AJ_T0090749.1 MGP_AJ_G0034177.1 mouse_genomes_project 8 118358593 118378988 - MGP_AJ_P0090749 Zdhhc7 protein_coding protein_coding MGP_AJ_T0090750.1 MGP_AJ_G0034177.1 mouse_genomes_project 8 118359901 118365055 - Zdhhc7 protein_coding retained_intron MGP_AJ_T0090751.1 MGP_AJ_G0034177.1 mouse_genomes_project 8 118363441 118366295 - Zdhhc7 protein_coding retained_intron MGP_AJ_T0090752.1 MGP_AJ_G0034177.1 mouse_genomes_project 8 118363631 118366488 - Zdhhc7 protein_coding retained_intron MGP_AJ_T0090753.1 MGP_AJ_G0034177.1 mouse_genomes_project 8 118370480 118378578 - Zdhhc7 protein_coding processed_transcript MGP_AJ_T0089556.1 MGP_AJ_G0033776.1 mouse_genomes_project 8 72518841 72555075 + MGP_AJ_P0089556 Tom1 protein_coding protein_coding MGP_AJ_T0089557.1 MGP_AJ_G0033776.1 mouse_genomes_project 8 72518841 72555075 + MGP_AJ_P0089557 Tom1 protein_coding protein_coding MGP_AJ_T0005394.1 MGP_AJ_G0004571.1 mouse_genomes_project 8 115274827 115281970 + Gm15395 antisense antisense MGP_AJ_T0011007.1 MGP_AJ_G0009129.1 mouse_genomes_project 8 105586189 105586259 + Mir140 miRNA miRNA MGP_AJ_T0016019.1 MGP_AJ_G0014114.1 mouse_genomes_project 8 80870280 80870756 + processed_pseudogene processed_pseudogene MGP_AJ_T0091025.1 MGP_AJ_G0034248.1 mouse_genomes_project 8 122407857 122435584 + MGP_AJ_P0091025 Urb2 protein_coding unknown_likely_coding MGP_AJ_T0091026.1 MGP_AJ_G0034248.1 mouse_genomes_project 8 122407886 122435585 + MGP_AJ_P0091026 Urb2 protein_coding nonsense_mediated_decay MGP_AJ_T0009085.1 MGP_AJ_G0007304.1 mouse_genomes_project 8 19673460 19676539 + Gm17491 lincRNA lincRNA MGP_AJ_T0090382.1 MGP_AJ_G0034049.1 mouse_genomes_project 8 103933762 103936427 - MGP_AJ_P0090382 Psmb10 protein_coding protein_coding MGP_AJ_T0090481.1 MGP_AJ_G0034083.1 mouse_genomes_project 8 105615510 105623614 - MGP_AJ_P0090481 Psmd7 protein_coding protein_coding MGP_AJ_T0088922.1 MGP_AJ_G0033586.1 mouse_genomes_project 8 45183965 45349681 - MGP_AJ_P0088922 Wwc2 protein_coding protein_coding MGP_AJ_T0088157.1 MGP_AJ_G0033320.1 mouse_genomes_project 8 1996024 2016474 - MGP_AJ_P0088157 Slc10a2 protein_coding protein_coding MGP_AJ_T0089334.1 MGP_AJ_G0033703.1 mouse_genomes_project 8 68103160 68103703 - MGP_AJ_P0089334 protein_coding protein_coding MGP_AJ_T0088792.1 MGP_AJ_G0033552.1 mouse_genomes_project 8 42273120 42389817 + MGP_AJ_P0088792 Fat1 protein_coding protein_coding MGP_AJ_T0088793.1 MGP_AJ_G0033552.1 mouse_genomes_project 8 42275903 42389824 + MGP_AJ_P0088793 Fat1 protein_coding unknown_likely_coding MGP_AJ_T0088794.1 MGP_AJ_G0033552.1 mouse_genomes_project 8 42287875 42389817 + MGP_AJ_P0088794 Fat1 protein_coding protein_coding MGP_AJ_T0088795.1 MGP_AJ_G0033552.1 mouse_genomes_project 8 42370916 42389805 + MGP_AJ_P0088795 Fat1 protein_coding protein_coding MGP_AJ_T0088796.1 MGP_AJ_G0033552.1 mouse_genomes_project 8 42382091 42388391 + MGP_AJ_P0088796 Fat1 protein_coding nonsense_mediated_decay MGP_AJ_T0088797.1 MGP_AJ_G0033552.1 mouse_genomes_project 8 42382091 42388391 + MGP_AJ_P0088797 Fat1 protein_coding protein_coding MGP_AJ_T0088798.1 MGP_AJ_G0033552.1 mouse_genomes_project 8 42382693 42388060 + Fat1 protein_coding retained_intron MGP_AJ_T0088308.1 MGP_AJ_G0033369.1 mouse_genomes_project 8 10839686 10852798 + MGP_AJ_P0088308 Champ1 protein_coding protein_coding MGP_AJ_T0088309.1 MGP_AJ_G0033369.1 mouse_genomes_project 8 10839749 10850970 + MGP_AJ_P0088309 Champ1 protein_coding protein_coding MGP_AJ_T0090280.1 MGP_AJ_G0034008.1 mouse_genomes_project 8 103103730 103126305 + MGP_AJ_P0090280 Ces4a protein_coding protein_coding MGP_AJ_T0089359.1 MGP_AJ_G0033715.1 mouse_genomes_project 8 68273416 68278546 - MGP_AJ_P0089359 Ccdc124 protein_coding protein_coding MGP_AJ_T0091017.1 MGP_AJ_G0034242.1 mouse_genomes_project 8 122220958 122239136 - MGP_AJ_P0091017 Ccsap protein_coding protein_coding MGP_AJ_T0091018.1 MGP_AJ_G0034242.1 mouse_genomes_project 8 122220971 122239823 - MGP_AJ_P0091018 Ccsap protein_coding protein_coding MGP_AJ_T0101871.1 MGP_AJ_G0039751.1 mouse_genomes_project 8 69441842 69444138 - transcribed_processed_pseudogene processed_transcript MGP_AJ_T0101872.1 MGP_AJ_G0039751.1 mouse_genomes_project 8 69442488 69443111 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0005323.1 MGP_AJ_G0004514.1 mouse_genomes_project 8 8310748 8329751 - Gm15419 antisense antisense MGP_AJ_T0091019.1 MGP_AJ_G0034243.1 mouse_genomes_project 8 122233429 122233872 + MGP_AJ_P0091019 protein_coding protein_coding MGP_AJ_T0090538.1 MGP_AJ_G0034108.1 mouse_genomes_project 8 108940417 108985238 + MGP_AJ_P0090538 Cog4 protein_coding protein_coding MGP_AJ_T0090539.1 MGP_AJ_G0034108.1 mouse_genomes_project 8 108940417 108947180 + MGP_AJ_P0090539 Cog4 protein_coding nonsense_mediated_decay MGP_AJ_T0090540.1 MGP_AJ_G0034108.1 mouse_genomes_project 8 108940427 108945797 + MGP_AJ_P0090540 Cog4 protein_coding protein_coding MGP_AJ_T0090541.1 MGP_AJ_G0034108.1 mouse_genomes_project 8 108940432 108943725 + Cog4 protein_coding retained_intron MGP_AJ_T0090542.1 MGP_AJ_G0034108.1 mouse_genomes_project 8 108940444 108947244 + Cog4 protein_coding processed_transcript MGP_AJ_T0090543.1 MGP_AJ_G0034108.1 mouse_genomes_project 8 108940444 108947281 + MGP_AJ_P0090543 Cog4 protein_coding nonsense_mediated_decay MGP_AJ_T0090544.1 MGP_AJ_G0034108.1 mouse_genomes_project 8 108940444 108947235 + MGP_AJ_P0090544 Cog4 protein_coding nonsense_mediated_decay MGP_AJ_T0090545.1 MGP_AJ_G0034108.1 mouse_genomes_project 8 108940447 108984871 + MGP_AJ_P0090545 Cog4 protein_coding protein_coding MGP_AJ_T0090546.1 MGP_AJ_G0034108.1 mouse_genomes_project 8 108943322 108985227 + MGP_AJ_P0090546 Cog4 protein_coding protein_coding MGP_AJ_T0090547.1 MGP_AJ_G0034108.1 mouse_genomes_project 8 108962430 108971123 + Cog4 protein_coding retained_intron MGP_AJ_T0090548.1 MGP_AJ_G0034108.1 mouse_genomes_project 8 108962585 108984871 + MGP_AJ_P0090548 Cog4 protein_coding nonsense_mediated_decay MGP_AJ_T0090549.1 MGP_AJ_G0034108.1 mouse_genomes_project 8 108965802 108969357 + Cog4 protein_coding retained_intron MGP_AJ_T0090550.1 MGP_AJ_G0034108.1 mouse_genomes_project 8 108983993 108984762 + Cog4 protein_coding retained_intron MGP_AJ_T0016034.1 MGP_AJ_G0014129.1 mouse_genomes_project 8 102783265 102784289 - processed_pseudogene processed_pseudogene MGP_AJ_T0002341.1 MGP_AJ_G0002251.1 mouse_genomes_project 8 118819186 118820021 - TEC TEC MGP_AJ_T0011708.1 MGP_AJ_G0009830.1 mouse_genomes_project 8 1044183 1044436 - Gm23888 misc_RNA misc_RNA MGP_AJ_T0015966.1 MGP_AJ_G0014061.1 mouse_genomes_project 8 12090975 12092879 - processed_pseudogene processed_pseudogene MGP_AJ_T0098733.1 MGP_AJ_G0036717.1 mouse_genomes_project 8 1979869 1979988 - n-R5s93 rRNA rRNA MGP_AJ_T0089422.1 MGP_AJ_G0033732.1 mouse_genomes_project 8 68959252 68964550 + MGP_AJ_P0089422 Gtpbp3 protein_coding protein_coding MGP_AJ_T0089423.1 MGP_AJ_G0033732.1 mouse_genomes_project 8 68959870 68964550 + MGP_AJ_P0089423 Gtpbp3 protein_coding nonsense_mediated_decay MGP_AJ_T0089424.1 MGP_AJ_G0033732.1 mouse_genomes_project 8 68959877 68970692 + MGP_AJ_P0089424 Gtpbp3 protein_coding nonsense_mediated_decay MGP_AJ_T0089425.1 MGP_AJ_G0033732.1 mouse_genomes_project 8 68959883 68960728 + Gtpbp3 protein_coding retained_intron MGP_AJ_T0089426.1 MGP_AJ_G0033732.1 mouse_genomes_project 8 68959892 68964550 + Gtpbp3 protein_coding retained_intron MGP_AJ_T0089427.1 MGP_AJ_G0033732.1 mouse_genomes_project 8 68959900 68964550 + MGP_AJ_P0089427 Gtpbp3 protein_coding nonsense_mediated_decay MGP_AJ_T0089428.1 MGP_AJ_G0033732.1 mouse_genomes_project 8 68960608 68962561 + Gtpbp3 protein_coding retained_intron MGP_AJ_T0088896.1 MGP_AJ_G0033575.1 mouse_genomes_project 8 44341647 44384279 + Enpp6 protein_coding retained_intron MGP_AJ_T0088897.1 MGP_AJ_G0033575.1 mouse_genomes_project 8 44341649 44443147 + Enpp6 protein_coding retained_intron MGP_AJ_T0088898.1 MGP_AJ_G0033575.1 mouse_genomes_project 8 44341649 44443147 + MGP_AJ_P0088898 Enpp6 protein_coding protein_coding MGP_AJ_T0088899.1 MGP_AJ_G0033575.1 mouse_genomes_project 8 44341676 44436558 + MGP_AJ_P0088899 Enpp6 protein_coding protein_coding MGP_AJ_T0088900.1 MGP_AJ_G0033575.1 mouse_genomes_project 8 44422801 44437238 + MGP_AJ_P0088900 Enpp6 protein_coding protein_coding MGP_AJ_T0090717.1 MGP_AJ_G0034166.1 mouse_genomes_project 8 117848983 117872081 + MGP_AJ_P0090717 Dnaaf1 protein_coding protein_coding MGP_AJ_T0090616.1 MGP_AJ_G0034126.1 mouse_genomes_project 8 109912208 110000101 - MGP_AJ_P0090616 Cfdp1 protein_coding protein_coding MGP_AJ_T0010992.1 MGP_AJ_G0009114.1 mouse_genomes_project 8 84124310 84124432 + Gm44348 miRNA miRNA MGP_AJ_T0088402.1 MGP_AJ_G0033412.1 mouse_genomes_project 8 19013624 19020117 + MGP_AJ_P0088402 Defb50 protein_coding protein_coding MGP_AJ_T0090501.1 MGP_AJ_G0034091.1 mouse_genomes_project 8 107750723 107782209 + MGP_AJ_P0090501 Zfp821 protein_coding unknown_likely_coding MGP_AJ_T0011722.1 MGP_AJ_G0009844.1 mouse_genomes_project 8 81292556 81292843 + Gm22024 misc_RNA misc_RNA MGP_AJ_T0089729.1 MGP_AJ_G0033839.1 mouse_genomes_project 8 81674423 81690120 - MGP_AJ_P0089729 Cc2d1a protein_coding protein_coding MGP_AJ_T0089730.1 MGP_AJ_G0033839.1 mouse_genomes_project 8 81674423 81690191 - MGP_AJ_P0089730 Cc2d1a protein_coding protein_coding MGP_AJ_T0089731.1 MGP_AJ_G0033839.1 mouse_genomes_project 8 81674432 81679096 - Cc2d1a protein_coding retained_intron MGP_AJ_T0089732.1 MGP_AJ_G0033839.1 mouse_genomes_project 8 81688709 81690152 - Cc2d1a protein_coding processed_transcript MGP_AJ_T0005387.1 MGP_AJ_G0004564.1 mouse_genomes_project 8 108898838 108900678 + Gm15895 antisense antisense MGP_AJ_T0088329.1 MGP_AJ_G0033377.1 mouse_genomes_project 8 11727871 11729974 - MGP_AJ_P0088329 protein_coding protein_coding MGP_AJ_T0088866.1 MGP_AJ_G0033567.1 mouse_genomes_project 8 43497767 43530658 + MGP_AJ_P0088866 Cfap97 protein_coding protein_coding MGP_AJ_T0088867.1 MGP_AJ_G0033567.1 mouse_genomes_project 8 43497808 43504694 + Cfap97 protein_coding processed_transcript MGP_AJ_T0088868.1 MGP_AJ_G0033567.1 mouse_genomes_project 8 43497851 43530654 + MGP_AJ_P0088868 Cfap97 protein_coding protein_coding MGP_AJ_T0088869.1 MGP_AJ_G0033567.1 mouse_genomes_project 8 43503664 43530656 + MGP_AJ_P0088869 Cfap97 protein_coding protein_coding MGP_AJ_T0018474.1 MGP_AJ_G0015695.1 mouse_genomes_project 8 74065575 74363130 - processed_transcript processed_transcript MGP_AJ_T0018475.1 MGP_AJ_G0015695.1 mouse_genomes_project 8 74213206 74363318 - processed_transcript processed_transcript MGP_AJ_T0018476.1 MGP_AJ_G0015695.1 mouse_genomes_project 8 74305344 74363766 - processed_transcript retained_intron MGP_AJ_T0010965.1 MGP_AJ_G0009087.1 mouse_genomes_project 8 61805790 61805900 - Mir710 miRNA miRNA MGP_AJ_T0100218.1 MGP_AJ_G0038184.1 mouse_genomes_project 8 75025132 75025240 - Gm23468 snRNA snRNA MGP_AJ_T0010952.1 MGP_AJ_G0009074.1 mouse_genomes_project 8 16524014 16524104 - Gm27852 miRNA miRNA MGP_AJ_T0090472.1 MGP_AJ_G0034081.1 mouse_genomes_project 8 105445406 105457982 - MGP_AJ_P0090472 Nob1 protein_coding protein_coding MGP_AJ_T0090473.1 MGP_AJ_G0034081.1 mouse_genomes_project 8 105445412 105454489 - Nob1 protein_coding retained_intron MGP_AJ_T0090474.1 MGP_AJ_G0034081.1 mouse_genomes_project 8 105445412 105457968 - MGP_AJ_P0090474 Nob1 protein_coding nonsense_mediated_decay MGP_AJ_T0090475.1 MGP_AJ_G0034081.1 mouse_genomes_project 8 105449164 105457913 - Nob1 protein_coding retained_intron MGP_AJ_T0090476.1 MGP_AJ_G0034081.1 mouse_genomes_project 8 105450621 105457978 - Nob1 protein_coding retained_intron MGP_AJ_T0090477.1 MGP_AJ_G0034081.1 mouse_genomes_project 8 105450982 105455254 - Nob1 protein_coding processed_transcript MGP_AJ_T0090478.1 MGP_AJ_G0034081.1 mouse_genomes_project 8 105451080 105451593 - Nob1 protein_coding retained_intron MGP_AJ_T0090479.1 MGP_AJ_G0034081.1 mouse_genomes_project 8 105451276 105457953 - MGP_AJ_P0090479 Nob1 protein_coding nonsense_mediated_decay MGP_AJ_T0016031.1 MGP_AJ_G0014126.1 mouse_genomes_project 8 98379050 98380186 + processed_pseudogene processed_pseudogene MGP_AJ_T0099138.1 MGP_AJ_G0037105.1 mouse_genomes_project 8 9326217 9377700 + Gm5607 sense_overlapping sense_overlapping MGP_AJ_T0099139.1 MGP_AJ_G0037105.1 mouse_genomes_project 8 9326217 9377679 + Gm5607 sense_overlapping sense_overlapping MGP_AJ_T0010946.1 MGP_AJ_G0009068.1 mouse_genomes_project 8 9893491 9893621 + Gm38671 miRNA miRNA MGP_AJ_T0011014.1 MGP_AJ_G0009136.1 mouse_genomes_project 8 109586790 109586913 + Mir1957b miRNA miRNA MGP_AJ_T0090489.1 MGP_AJ_G0034089.1 mouse_genomes_project 8 107634578 107650877 - MGP_AJ_P0090489 Dhodh protein_coding nonsense_mediated_decay MGP_AJ_T0090490.1 MGP_AJ_G0034089.1 mouse_genomes_project 8 107636482 107637287 - Dhodh protein_coding processed_transcript MGP_AJ_T0090491.1 MGP_AJ_G0034089.1 mouse_genomes_project 8 107636708 107653017 - MGP_AJ_P0090491 Dhodh protein_coding protein_coding MGP_AJ_T0090492.1 MGP_AJ_G0034089.1 mouse_genomes_project 8 107636712 107653268 - MGP_AJ_P0090492 Dhodh protein_coding protein_coding MGP_AJ_T0090493.1 MGP_AJ_G0034089.1 mouse_genomes_project 8 107637136 107639518 - Dhodh protein_coding retained_intron MGP_AJ_T0090494.1 MGP_AJ_G0034089.1 mouse_genomes_project 8 107637208 107638186 - Dhodh protein_coding retained_intron MGP_AJ_T0090495.1 MGP_AJ_G0034089.1 mouse_genomes_project 8 107637281 107644683 - Dhodh protein_coding retained_intron MGP_AJ_T0090496.1 MGP_AJ_G0034089.1 mouse_genomes_project 8 107639265 107653011 - MGP_AJ_P0090496 Dhodh protein_coding nonsense_mediated_decay MGP_AJ_T0090497.1 MGP_AJ_G0034089.1 mouse_genomes_project 8 107644488 107653065 - Dhodh protein_coding retained_intron MGP_AJ_T0090498.1 MGP_AJ_G0034089.1 mouse_genomes_project 8 107644502 107653065 - Dhodh protein_coding retained_intron MGP_AJ_T0090499.1 MGP_AJ_G0034089.1 mouse_genomes_project 8 107646474 107653318 - MGP_AJ_P0090499 Dhodh protein_coding protein_coding MGP_AJ_T0009156.1 MGP_AJ_G0007360.1 mouse_genomes_project 8 89394763 89402957 + Irx3os lincRNA lincRNA MGP_AJ_T0009157.1 MGP_AJ_G0007360.1 mouse_genomes_project 8 89396523 89400633 + Irx3os lincRNA lincRNA MGP_AJ_T0088185.1 MGP_AJ_G0033335.1 mouse_genomes_project 8 8431610 8470544 - MGP_AJ_P0088185 Cars2 protein_coding protein_coding MGP_AJ_T0088186.1 MGP_AJ_G0033335.1 mouse_genomes_project 8 8431612 8470450 - MGP_AJ_P0088186 Cars2 protein_coding unknown_likely_coding MGP_AJ_T0090189.1 MGP_AJ_G0033973.1 mouse_genomes_project 8 93313225 93324654 + MGP_AJ_P0090189 Gins3 protein_coding protein_coding MGP_AJ_T0088997.1 MGP_AJ_G0033610.1 mouse_genomes_project 8 57751301 57821009 - MGP_AJ_P0088997 Gm10283 protein_coding protein_coding MGP_AJ_T0088894.1 MGP_AJ_G0033573.1 mouse_genomes_project 8 43978190 44000386 + MGP_AJ_P0088894 Casp3 protein_coding unknown_likely_coding MGP_AJ_T0088028.1 MGP_AJ_G0033286.1 mouse_genomes_project 8 379893 396909 + MGP_AJ_P0088028 1700019B03Rik protein_coding protein_coding MGP_AJ_T0088029.1 MGP_AJ_G0033286.1 mouse_genomes_project 8 379893 396909 + MGP_AJ_P0088029 1700019B03Rik protein_coding nonsense_mediated_decay MGP_AJ_T0088030.1 MGP_AJ_G0033286.1 mouse_genomes_project 8 384907 396912 + MGP_AJ_P0088030 1700019B03Rik protein_coding protein_coding MGP_AJ_T0091103.1 MGP_AJ_G0034276.1 mouse_genomes_project 8 125364557 125381419 - MGP_AJ_P0091103 Tomm20 protein_coding protein_coding MGP_AJ_T0090945.1 MGP_AJ_G0034223.1 mouse_genomes_project 8 121491944 121509495 - MGP_AJ_P0090945 Sult5a1 protein_coding unknown_likely_coding MGP_AJ_T0090946.1 MGP_AJ_G0034223.1 mouse_genomes_project 8 121491951 121508850 - MGP_AJ_P0090946 Sult5a1 protein_coding nonsense_mediated_decay MGP_AJ_T0090947.1 MGP_AJ_G0034223.1 mouse_genomes_project 8 121494660 121508837 - MGP_AJ_P0090947 Sult5a1 protein_coding protein_coding MGP_AJ_T0090948.1 MGP_AJ_G0034223.1 mouse_genomes_project 8 121498539 121508808 - MGP_AJ_P0090948 Sult5a1 protein_coding nonsense_mediated_decay MGP_AJ_T0090949.1 MGP_AJ_G0034223.1 mouse_genomes_project 8 121507531 121508854 - Sult5a1 protein_coding retained_intron MGP_AJ_T0090950.1 MGP_AJ_G0034223.1 mouse_genomes_project 8 121507844 121508895 - Sult5a1 protein_coding retained_intron MGP_AJ_T0101513.1 MGP_AJ_G0039479.1 mouse_genomes_project 8 94000930 94001062 - Gm22780 snoRNA snoRNA MGP_AJ_T0098735.1 MGP_AJ_G0036719.1 mouse_genomes_project 8 6458855 6458973 - n-R5s95 rRNA rRNA MGP_AJ_T0016013.1 MGP_AJ_G0014108.1 mouse_genomes_project 8 78434370 78435364 + processed_pseudogene processed_pseudogene MGP_AJ_T0090485.1 MGP_AJ_G0034086.1 mouse_genomes_project 8 107589071 107606636 - MGP_AJ_P0090485 Dhx38 protein_coding protein_coding MGP_AJ_T0101520.1 MGP_AJ_G0039486.1 mouse_genomes_project 8 109550179 109550311 + Gm24793 snoRNA snoRNA MGP_AJ_T0015979.1 MGP_AJ_G0014074.1 mouse_genomes_project 8 18895611 18898143 + processed_pseudogene processed_pseudogene MGP_AJ_T0090206.1 MGP_AJ_G0033977.1 mouse_genomes_project 8 93513710 93531233 - MGP_AJ_P0090206 Slc38a7 protein_coding unknown_likely_coding MGP_AJ_T0090207.1 MGP_AJ_G0033977.1 mouse_genomes_project 8 93517635 93519414 - Slc38a7 protein_coding retained_intron MGP_AJ_T0090208.1 MGP_AJ_G0033977.1 mouse_genomes_project 8 93519612 93521588 - Slc38a7 protein_coding retained_intron MGP_AJ_T0090099.1 MGP_AJ_G0033943.1 mouse_genomes_project 8 92070421 92079362 + MGP_AJ_P0090099 Herpud1 protein_coding protein_coding MGP_AJ_T0090100.1 MGP_AJ_G0033943.1 mouse_genomes_project 8 92070478 92079343 + MGP_AJ_P0090100 Herpud1 protein_coding protein_coding MGP_AJ_T0090101.1 MGP_AJ_G0033943.1 mouse_genomes_project 8 92071536 92076457 + Herpud1 protein_coding processed_transcript MGP_AJ_T0090102.1 MGP_AJ_G0033943.1 mouse_genomes_project 8 92071582 92076297 + Herpud1 protein_coding processed_transcript MGP_AJ_T0090103.1 MGP_AJ_G0033943.1 mouse_genomes_project 8 92077521 92078894 + Herpud1 protein_coding retained_intron MGP_AJ_T0089057.1 MGP_AJ_G0033624.1 mouse_genomes_project 8 61877177 61978965 - MGP_AJ_P0089057 Cpe protein_coding protein_coding MGP_AJ_T0089598.1 MGP_AJ_G0033791.1 mouse_genomes_project 8 76501989 76546905 + MGP_AJ_P0089598 Zfp827 protein_coding protein_coding MGP_AJ_T0089599.1 MGP_AJ_G0033791.1 mouse_genomes_project 8 76501989 76669835 + MGP_AJ_P0089599 Zfp827 protein_coding protein_coding MGP_AJ_T0089600.1 MGP_AJ_G0033791.1 mouse_genomes_project 8 76502139 76666948 + MGP_AJ_P0089600 Zfp827 protein_coding protein_coding MGP_AJ_T0089601.1 MGP_AJ_G0033791.1 mouse_genomes_project 8 76502239 76663053 + MGP_AJ_P0089601 Zfp827 protein_coding unknown_likely_coding MGP_AJ_T0089602.1 MGP_AJ_G0033791.1 mouse_genomes_project 8 76593607 76669858 + MGP_AJ_P0089602 Zfp827 protein_coding protein_coding MGP_AJ_T0089603.1 MGP_AJ_G0033791.1 mouse_genomes_project 8 76595763 76669284 + MGP_AJ_P0089603 Zfp827 protein_coding protein_coding MGP_AJ_T0089604.1 MGP_AJ_G0033791.1 mouse_genomes_project 8 76651937 76666946 + MGP_AJ_P0089604 Zfp827 protein_coding protein_coding MGP_AJ_T0089605.1 MGP_AJ_G0033791.1 mouse_genomes_project 8 76655102 76665853 + MGP_AJ_P0089605 Zfp827 protein_coding protein_coding MGP_AJ_T0016015.1 MGP_AJ_G0014110.1 mouse_genomes_project 8 78809799 78810772 - processed_pseudogene processed_pseudogene MGP_AJ_T0010956.1 MGP_AJ_G0009078.1 mouse_genomes_project 8 22352055 22352164 - Mir8108 miRNA miRNA MGP_AJ_T0088166.1 MGP_AJ_G0033327.1 mouse_genomes_project 8 6871332 6885781 + MGP_AJ_P0088166 Abhd13 protein_coding protein_coding MGP_AJ_T0088167.1 MGP_AJ_G0033327.1 mouse_genomes_project 8 6871342 6885781 + MGP_AJ_P0088167 Abhd13 protein_coding protein_coding MGP_AJ_T0088917.1 MGP_AJ_G0033581.1 mouse_genomes_project 8 45025036 45026700 + MGP_AJ_P0088917 protein_coding protein_coding MGP_AJ_T0089163.1 MGP_AJ_G0033659.1 mouse_genomes_project 8 67167870 67184599 + MGP_AJ_P0089163 Atp13a1 protein_coding protein_coding MGP_AJ_T0010962.1 MGP_AJ_G0009084.1 mouse_genomes_project 8 44942826 44942906 + Gm27409 miRNA miRNA MGP_AJ_T0090484.1 MGP_AJ_G0034085.1 mouse_genomes_project 8 107533684 107583984 + MGP_AJ_P0090484 Pmfbp1 protein_coding protein_coding MGP_AJ_T0098487.1 MGP_AJ_G0036471.1 mouse_genomes_project 8 120918890 120919321 + pseudogene pseudogene MGP_AJ_T0089712.1 MGP_AJ_G0033830.1 mouse_genomes_project 8 81549980 81551917 - MGP_AJ_P0089712 2210011C24Rik protein_coding protein_coding MGP_AJ_T0089713.1 MGP_AJ_G0033830.1 mouse_genomes_project 8 81549997 81551170 - MGP_AJ_P0089713 2210011C24Rik protein_coding protein_coding MGP_AJ_T0089714.1 MGP_AJ_G0033830.1 mouse_genomes_project 8 81550525 81551170 - MGP_AJ_P0089714 2210011C24Rik protein_coding protein_coding MGP_AJ_T0089715.1 MGP_AJ_G0033830.1 mouse_genomes_project 8 81551202 81551930 - MGP_AJ_P0089715 2210011C24Rik protein_coding protein_coding MGP_AJ_T0089716.1 MGP_AJ_G0033830.1 mouse_genomes_project 8 81551210 81551915 - MGP_AJ_P0089716 2210011C24Rik protein_coding protein_coding MGP_AJ_T0090156.1 MGP_AJ_G0033959.1 mouse_genomes_project 8 92666389 92704193 + MGP_AJ_P0090156 Adgrg1 protein_coding protein_coding MGP_AJ_T0090157.1 MGP_AJ_G0033959.1 mouse_genomes_project 8 92673678 92704193 + MGP_AJ_P0090157 Adgrg1 protein_coding protein_coding MGP_AJ_T0088085.1 MGP_AJ_G0033303.1 mouse_genomes_project 8 791187 797916 - MGP_AJ_P0088085 Cd209d protein_coding protein_coding MGP_AJ_T0005391.1 MGP_AJ_G0004568.1 mouse_genomes_project 8 112854979 112857550 - Gm16117 antisense antisense MGP_AJ_T0088698.1 MGP_AJ_G0033521.1 mouse_genomes_project 8 33094307 33096160 - MGP_AJ_P0088698 Cldn23 protein_coding protein_coding MGP_AJ_T0088695.1 MGP_AJ_G0033519.1 mouse_genomes_project 8 32831943 32930629 + MGP_AJ_P0088695 Mfhas1 protein_coding protein_coding MGP_AJ_T0088696.1 MGP_AJ_G0033519.1 mouse_genomes_project 8 32851467 32928218 + Mfhas1 protein_coding processed_transcript MGP_AJ_T0088161.1 MGP_AJ_G0033323.1 mouse_genomes_project 8 5554864 5578809 - MGP_AJ_P0088161 Arglu1 protein_coding protein_coding MGP_AJ_T0009087.1 MGP_AJ_G0007306.1 mouse_genomes_project 8 24036288 24046217 - lincRNA lincRNA MGP_AJ_T0088391.1 MGP_AJ_G0033402.1 mouse_genomes_project 8 16488928 16490550 + MGP_AJ_P0088391 Defb7 protein_coding protein_coding MGP_AJ_T0101477.1 MGP_AJ_G0039443.1 mouse_genomes_project 8 28376386 28376490 - Snord13 snoRNA snoRNA MGP_AJ_T0009126.1 MGP_AJ_G0007339.1 mouse_genomes_project 8 78514143 78540616 + lincRNA lincRNA MGP_AJ_T0088950.1 MGP_AJ_G0033594.1 mouse_genomes_project 8 51933354 51972261 + MGP_AJ_P0088950 Asb5 protein_coding protein_coding MGP_AJ_T0090442.1 MGP_AJ_G0034074.1 mouse_genomes_project 8 105069569 105079909 - MGP_AJ_P0090442 Cog8 protein_coding protein_coding MGP_AJ_T0090443.1 MGP_AJ_G0034074.1 mouse_genomes_project 8 105069575 105079904 - MGP_AJ_P0090443 Cog8 protein_coding protein_coding MGP_AJ_T0090445.1 MGP_AJ_G0034074.1 mouse_genomes_project 8 105075901 105077481 - Cog8 protein_coding retained_intron MGP_AJ_T0090446.1 MGP_AJ_G0034074.1 mouse_genomes_project 8 105076131 105079718 - MGP_AJ_P0090446 Cog8 protein_coding nonsense_mediated_decay MGP_AJ_T0009179.1 MGP_AJ_G0007373.1 mouse_genomes_project 8 104248324 104440817 - Gm26786 lincRNA lincRNA MGP_AJ_T0089344.1 MGP_AJ_G0033707.1 mouse_genomes_project 8 68163305 68165578 - MGP_AJ_P0089344 Mpv17l2 protein_coding protein_coding MGP_AJ_T0088405.1 MGP_AJ_G0033415.1 mouse_genomes_project 8 19067347 19070836 - MGP_AJ_P0088405 Defb9 protein_coding protein_coding MGP_AJ_T0015963.1 MGP_AJ_G0014058.1 mouse_genomes_project 8 9967379 9967649 + processed_pseudogene processed_pseudogene MGP_AJ_T0101491.1 MGP_AJ_G0039457.1 mouse_genomes_project 8 60080680 60080794 + Gm22324 snoRNA snoRNA MGP_AJ_T0088227.1 MGP_AJ_G0033347.1 mouse_genomes_project 8 9818587 9824928 + MGP_AJ_P0088227 Mcf2l protein_coding protein_coding MGP_AJ_T0088228.1 MGP_AJ_G0033347.1 mouse_genomes_project 8 9818608 9964492 + MGP_AJ_P0088228 Mcf2l protein_coding protein_coding MGP_AJ_T0088229.1 MGP_AJ_G0033347.1 mouse_genomes_project 8 9818729 9835772 + Mcf2l protein_coding processed_transcript MGP_AJ_T0088230.1 MGP_AJ_G0033347.1 mouse_genomes_project 8 9860919 9966344 + MGP_AJ_P0088230 Mcf2l protein_coding protein_coding MGP_AJ_T0088231.1 MGP_AJ_G0033347.1 mouse_genomes_project 8 9861574 9937628 + Mcf2l protein_coding processed_transcript MGP_AJ_T0088232.1 MGP_AJ_G0033347.1 mouse_genomes_project 8 9861638 9964748 + MGP_AJ_P0088232 Mcf2l protein_coding protein_coding MGP_AJ_T0088233.1 MGP_AJ_G0033347.1 mouse_genomes_project 8 9861639 9965945 + MGP_AJ_P0088233 Mcf2l protein_coding protein_coding MGP_AJ_T0088234.1 MGP_AJ_G0033347.1 mouse_genomes_project 8 9872292 9963616 + MGP_AJ_P0088234 Mcf2l protein_coding protein_coding MGP_AJ_T0088235.1 MGP_AJ_G0033347.1 mouse_genomes_project 8 9893469 9933619 + Mcf2l protein_coding retained_intron MGP_AJ_T0088236.1 MGP_AJ_G0033347.1 mouse_genomes_project 8 9893503 9959468 + MGP_AJ_P0088236 Mcf2l protein_coding protein_coding MGP_AJ_T0088237.1 MGP_AJ_G0033347.1 mouse_genomes_project 8 9894966 9964714 + MGP_AJ_P0088237 Mcf2l protein_coding protein_coding MGP_AJ_T0088238.1 MGP_AJ_G0033347.1 mouse_genomes_project 8 9895034 9965940 + MGP_AJ_P0088238 Mcf2l protein_coding protein_coding MGP_AJ_T0088239.1 MGP_AJ_G0033347.1 mouse_genomes_project 8 9929742 9962907 + MGP_AJ_P0088239 Mcf2l protein_coding protein_coding MGP_AJ_T0088240.1 MGP_AJ_G0033347.1 mouse_genomes_project 8 9929747 9956985 + MGP_AJ_P0088240 Mcf2l protein_coding protein_coding MGP_AJ_T0088241.1 MGP_AJ_G0033347.1 mouse_genomes_project 8 9929762 9965944 + MGP_AJ_P0088241 Mcf2l protein_coding protein_coding MGP_AJ_T0088242.1 MGP_AJ_G0033347.1 mouse_genomes_project 8 9956932 9965966 + MGP_AJ_P0088242 Mcf2l protein_coding protein_coding MGP_AJ_T0088243.1 MGP_AJ_G0033347.1 mouse_genomes_project 8 9956948 9963533 + MGP_AJ_P0088243 Mcf2l protein_coding protein_coding MGP_AJ_T0088244.1 MGP_AJ_G0033347.1 mouse_genomes_project 8 9957256 9962878 + MGP_AJ_P0088244 Mcf2l protein_coding protein_coding MGP_AJ_T0088245.1 MGP_AJ_G0033347.1 mouse_genomes_project 8 9958500 9960804 + Mcf2l protein_coding retained_intron MGP_AJ_T0088246.1 MGP_AJ_G0033347.1 mouse_genomes_project 8 9958999 9964438 + MGP_AJ_P0088246 Mcf2l protein_coding protein_coding MGP_AJ_T0088247.1 MGP_AJ_G0033347.1 mouse_genomes_project 8 9962614 9964446 + Mcf2l protein_coding retained_intron MGP_AJ_T0089364.1 MGP_AJ_G0033720.1 mouse_genomes_project 8 68710617 68734417 - MGP_AJ_P0089364 Haus8 protein_coding nonsense_mediated_decay MGP_AJ_T0089365.1 MGP_AJ_G0033720.1 mouse_genomes_project 8 68713169 68734890 - MGP_AJ_P0089365 Haus8 protein_coding protein_coding MGP_AJ_T0089366.1 MGP_AJ_G0033720.1 mouse_genomes_project 8 68713169 68734333 - MGP_AJ_P0089366 Haus8 protein_coding protein_coding MGP_AJ_T0089367.1 MGP_AJ_G0033720.1 mouse_genomes_project 8 68717465 68734417 - Haus8 protein_coding processed_transcript MGP_AJ_T0089368.1 MGP_AJ_G0033720.1 mouse_genomes_project 8 68718060 68718676 - Haus8 protein_coding retained_intron MGP_AJ_T0089369.1 MGP_AJ_G0033720.1 mouse_genomes_project 8 68718087 68734435 - Haus8 protein_coding processed_transcript MGP_AJ_T0089370.1 MGP_AJ_G0033720.1 mouse_genomes_project 8 68719060 68734399 - Haus8 protein_coding retained_intron MGP_AJ_T0089371.1 MGP_AJ_G0033720.1 mouse_genomes_project 8 68722494 68734315 - Haus8 protein_coding processed_transcript MGP_AJ_T0090024.1 MGP_AJ_G0033915.1 mouse_genomes_project 8 88908057 89261747 + MGP_AJ_P0090024 Fto protein_coding protein_coding MGP_AJ_T0090025.1 MGP_AJ_G0033915.1 mouse_genomes_project 8 88908060 89033646 + Fto protein_coding retained_intron MGP_AJ_T0090026.1 MGP_AJ_G0033915.1 mouse_genomes_project 8 88908083 89117792 + Fto protein_coding retained_intron MGP_AJ_T0090027.1 MGP_AJ_G0033915.1 mouse_genomes_project 8 88908093 89079777 + Fto protein_coding retained_intron MGP_AJ_T0090028.1 MGP_AJ_G0033915.1 mouse_genomes_project 8 88983198 89005303 + MGP_AJ_P0090028 Fto protein_coding protein_coding MGP_AJ_T0090029.1 MGP_AJ_G0033915.1 mouse_genomes_project 8 88986017 89004927 + MGP_AJ_P0090029 Fto protein_coding protein_coding MGP_AJ_T0090030.1 MGP_AJ_G0033915.1 mouse_genomes_project 8 89057874 89260259 + Fto protein_coding processed_transcript MGP_AJ_T0088188.1 MGP_AJ_G0033337.1 mouse_genomes_project 8 8535497 8559661 - MGP_AJ_P0088188 Ankrd10 protein_coding protein_coding MGP_AJ_T0088189.1 MGP_AJ_G0033337.1 mouse_genomes_project 8 8538065 8559661 - MGP_AJ_P0088189 Ankrd10 protein_coding protein_coding MGP_AJ_T0009142.1 MGP_AJ_G0007353.1 mouse_genomes_project 8 84995639 84996639 + 4930535O05Rik lincRNA lincRNA MGP_AJ_T0015989.1 MGP_AJ_G0014084.1 mouse_genomes_project 8 33650011 33651056 - processed_pseudogene processed_pseudogene MGP_AJ_T0089668.1 MGP_AJ_G0033819.1 mouse_genomes_project 8 81192702 81204769 + MGP_AJ_P0089668 Gipc1 protein_coding protein_coding MGP_AJ_T0090063.1 MGP_AJ_G0033929.1 mouse_genomes_project 8 90971132 91007252 - MGP_AJ_P0090063 Ces1g protein_coding protein_coding MGP_AJ_T0088395.1 MGP_AJ_G0033405.1 mouse_genomes_project 8 18062340 18067312 - MGP_AJ_P0088395 Gm6040 protein_coding protein_coding MGP_AJ_T0101469.1 MGP_AJ_G0039435.1 mouse_genomes_project 8 15850525 15850628 + Gm22551 snoRNA snoRNA MGP_AJ_T0090308.1 MGP_AJ_G0034015.1 mouse_genomes_project 8 103254405 103259727 + MGP_AJ_P0090308 Nol3 protein_coding protein_coding MGP_AJ_T0088677.1 MGP_AJ_G0033510.1 mouse_genomes_project 8 31310231 31314965 - Dctn6 protein_coding retained_intron MGP_AJ_T0088678.1 MGP_AJ_G0033510.1 mouse_genomes_project 8 31310234 31328406 - MGP_AJ_P0088678 Dctn6 protein_coding protein_coding MGP_AJ_T0088679.1 MGP_AJ_G0033510.1 mouse_genomes_project 8 31310374 31328146 - MGP_AJ_P0088679 Dctn6 protein_coding protein_coding MGP_AJ_T0088680.1 MGP_AJ_G0033510.1 mouse_genomes_project 8 31310389 31327424 - Dctn6 protein_coding processed_transcript MGP_AJ_T0088681.1 MGP_AJ_G0033510.1 mouse_genomes_project 8 31310407 31325227 - MGP_AJ_P0088681 Dctn6 protein_coding protein_coding MGP_AJ_T0088682.1 MGP_AJ_G0033510.1 mouse_genomes_project 8 31310418 31312765 - Dctn6 protein_coding retained_intron MGP_AJ_T0088683.1 MGP_AJ_G0033510.1 mouse_genomes_project 8 31310449 31327462 - MGP_AJ_P0088683 Dctn6 protein_coding protein_coding MGP_AJ_T0088684.1 MGP_AJ_G0033510.1 mouse_genomes_project 8 31312350 31317550 - Dctn6 protein_coding retained_intron MGP_AJ_T0088685.1 MGP_AJ_G0033510.1 mouse_genomes_project 8 31314624 31328087 - Dctn6 protein_coding retained_intron MGP_AJ_T0088686.1 MGP_AJ_G0033510.1 mouse_genomes_project 8 31314838 31328073 - MGP_AJ_P0088686 Dctn6 protein_coding protein_coding MGP_AJ_T0011026.1 MGP_AJ_G0009148.1 mouse_genomes_project 8 122409923 122410005 + Mir1967 miRNA miRNA MGP_AJ_T0088976.1 MGP_AJ_G0033602.1 mouse_genomes_project 8 53895148 53936043 + MGP_AJ_P0088976 Fbxo8 protein_coding protein_coding MGP_AJ_T0088977.1 MGP_AJ_G0033602.1 mouse_genomes_project 8 53895376 53915434 + Fbxo8 protein_coding retained_intron MGP_AJ_T0088169.1 MGP_AJ_G0033329.1 mouse_genomes_project 8 7147130 7531757 + MGP_AJ_P0088169 Myo16 protein_coding unknown_likely_coding MGP_AJ_T0088170.1 MGP_AJ_G0033329.1 mouse_genomes_project 8 7171400 7531748 + MGP_AJ_P0088170 Myo16 protein_coding protein_coding MGP_AJ_T0089485.1 MGP_AJ_G0033749.1 mouse_genomes_project 8 69448016 69459163 + MGP_AJ_P0089485 Zfp617 protein_coding protein_coding MGP_AJ_T0011729.1 MGP_AJ_G0009851.1 mouse_genomes_project 8 119004776 119005031 - Gm24239 misc_RNA misc_RNA MGP_AJ_T0100229.1 MGP_AJ_G0038195.1 mouse_genomes_project 8 96795148 96796085 + Gm24693 snRNA snRNA MGP_AJ_T0089631.1 MGP_AJ_G0033805.1 mouse_genomes_project 8 78845056 79266871 + MGP_AJ_P0089631 Inpp4b protein_coding protein_coding MGP_AJ_T0089632.1 MGP_AJ_G0033805.1 mouse_genomes_project 8 78845058 79586519 + MGP_AJ_P0089632 Inpp4b protein_coding protein_coding MGP_AJ_T0089633.1 MGP_AJ_G0033805.1 mouse_genomes_project 8 78845062 79645091 + MGP_AJ_P0089633 Inpp4b protein_coding nonsense_mediated_decay MGP_AJ_T0089634.1 MGP_AJ_G0033805.1 mouse_genomes_project 8 78845062 79644859 + MGP_AJ_P0089634 Inpp4b protein_coding protein_coding MGP_AJ_T0089635.1 MGP_AJ_G0033805.1 mouse_genomes_project 8 78845062 79647343 + MGP_AJ_P0089635 Inpp4b protein_coding protein_coding MGP_AJ_T0089636.1 MGP_AJ_G0033805.1 mouse_genomes_project 8 79229453 79644864 + MGP_AJ_P0089636 Inpp4b protein_coding protein_coding MGP_AJ_T0089637.1 MGP_AJ_G0033805.1 mouse_genomes_project 8 79289481 79336812 + Inpp4b protein_coding processed_transcript MGP_AJ_T0089638.1 MGP_AJ_G0033805.1 mouse_genomes_project 8 79292503 79415555 + Inpp4b protein_coding processed_transcript MGP_AJ_T0089639.1 MGP_AJ_G0033805.1 mouse_genomes_project 8 79295967 79586519 + MGP_AJ_P0089639 Inpp4b protein_coding protein_coding MGP_AJ_T0089640.1 MGP_AJ_G0033805.1 mouse_genomes_project 8 79369674 79478222 + Inpp4b protein_coding processed_transcript MGP_AJ_T0089641.1 MGP_AJ_G0033805.1 mouse_genomes_project 8 79384212 79644873 + MGP_AJ_P0089641 Inpp4b protein_coding protein_coding MGP_AJ_T0089642.1 MGP_AJ_G0033805.1 mouse_genomes_project 8 79421854 79434243 + Inpp4b protein_coding processed_transcript MGP_AJ_T0089393.1 MGP_AJ_G0033724.1 mouse_genomes_project 8 68845509 68853293 - Nr2f6 protein_coding processed_transcript MGP_AJ_T0089394.1 MGP_AJ_G0033724.1 mouse_genomes_project 8 68845513 68853347 - MGP_AJ_P0089394 Nr2f6 protein_coding protein_coding MGP_AJ_T0089395.1 MGP_AJ_G0033724.1 mouse_genomes_project 8 68846014 68847177 - Nr2f6 protein_coding processed_transcript MGP_AJ_T0089396.1 MGP_AJ_G0033724.1 mouse_genomes_project 8 68846039 68847177 - Nr2f6 protein_coding processed_transcript MGP_AJ_T0089397.1 MGP_AJ_G0033724.1 mouse_genomes_project 8 68846504 68847177 - Nr2f6 protein_coding processed_transcript MGP_AJ_T0089398.1 MGP_AJ_G0033724.1 mouse_genomes_project 8 68847138 68852296 - Nr2f6 protein_coding processed_transcript MGP_AJ_T0089399.1 MGP_AJ_G0033724.1 mouse_genomes_project 8 68847138 68852477 - MGP_AJ_P0089399 Nr2f6 protein_coding protein_coding MGP_AJ_T0089400.1 MGP_AJ_G0033724.1 mouse_genomes_project 8 68847205 68852564 - MGP_AJ_P0089400 Nr2f6 protein_coding protein_coding MGP_AJ_T0018447.1 MGP_AJ_G0015684.1 mouse_genomes_project 8 9614559 9615862 + 4931415C17Rik processed_transcript processed_transcript MGP_AJ_T0018448.1 MGP_AJ_G0015684.1 mouse_genomes_project 8 9614800 9621605 + 4931415C17Rik processed_transcript processed_transcript MGP_AJ_T0101461.1 MGP_AJ_G0039427.1 mouse_genomes_project 8 4529792 4529921 + Gm25169 snoRNA snoRNA MGP_AJ_T0016037.1 MGP_AJ_G0014132.1 mouse_genomes_project 8 119015844 119016525 + processed_pseudogene processed_pseudogene MGP_AJ_T0089737.1 MGP_AJ_G0033842.1 mouse_genomes_project 8 81755286 81781195 - MGP_AJ_P0089737 Zswim4 protein_coding protein_coding MGP_AJ_T0098479.1 MGP_AJ_G0036463.1 mouse_genomes_project 8 85694185 85694616 - pseudogene pseudogene MGP_AJ_T0090226.1 MGP_AJ_G0033985.1 mouse_genomes_project 8 102173704 102190541 - MGP_AJ_P0090226 Cmtm2a protein_coding protein_coding MGP_AJ_T0002328.1 MGP_AJ_G0002239.1 mouse_genomes_project 8 12021386 12025487 - TEC TEC MGP_AJ_T0088590.1 MGP_AJ_G0033476.1 mouse_genomes_project 8 23326296 23351116 + MGP_AJ_P0088590 Rnf170 protein_coding protein_coding MGP_AJ_T0088591.1 MGP_AJ_G0033476.1 mouse_genomes_project 8 23326306 23348550 + MGP_AJ_P0088591 Rnf170 protein_coding nonsense_mediated_decay MGP_AJ_T0088592.1 MGP_AJ_G0033476.1 mouse_genomes_project 8 23326309 23348349 + MGP_AJ_P0088592 Rnf170 protein_coding protein_coding MGP_AJ_T0088593.1 MGP_AJ_G0033476.1 mouse_genomes_project 8 23326314 23336621 + MGP_AJ_P0088593 Rnf170 protein_coding protein_coding MGP_AJ_T0088594.1 MGP_AJ_G0033476.1 mouse_genomes_project 8 23326402 23337012 + MGP_AJ_P0088594 Rnf170 protein_coding protein_coding MGP_AJ_T0088595.1 MGP_AJ_G0033476.1 mouse_genomes_project 8 23326492 23349894 + MGP_AJ_P0088595 Rnf170 protein_coding nonsense_mediated_decay MGP_AJ_T0088596.1 MGP_AJ_G0033476.1 mouse_genomes_project 8 23326590 23336621 + MGP_AJ_P0088596 Rnf170 protein_coding protein_coding MGP_AJ_T0088597.1 MGP_AJ_G0033476.1 mouse_genomes_project 8 23327406 23333709 + MGP_AJ_P0088597 Rnf170 protein_coding protein_coding MGP_AJ_T0088598.1 MGP_AJ_G0033476.1 mouse_genomes_project 8 23331347 23348303 + MGP_AJ_P0088598 Rnf170 protein_coding nonsense_mediated_decay MGP_AJ_T0088489.1 MGP_AJ_G0033448.1 mouse_genomes_project 8 21374476 21387691 + MGP_AJ_P0088489 protein_coding protein_coding MGP_AJ_T0002342.1 MGP_AJ_G0002252.1 mouse_genomes_project 8 118971023 118971890 + TEC TEC MGP_AJ_T0011028.1 MGP_AJ_G0009150.1 mouse_genomes_project 8 126745898 126745976 - Mir21c miRNA miRNA MGP_AJ_T0089040.1 MGP_AJ_G0033619.1 mouse_genomes_project 8 59238454 59273451 + MGP_AJ_P0089040 Ddx60 protein_coding protein_coding MGP_AJ_T0089041.1 MGP_AJ_G0033619.1 mouse_genomes_project 8 59238456 59350636 + MGP_AJ_P0089041 Ddx60 protein_coding protein_coding MGP_AJ_T0089042.1 MGP_AJ_G0033619.1 mouse_genomes_project 8 59238456 59350642 + MGP_AJ_P0089042 Ddx60 protein_coding protein_coding MGP_AJ_T0089043.1 MGP_AJ_G0033619.1 mouse_genomes_project 8 59238456 59251085 + MGP_AJ_P0089043 Ddx60 protein_coding protein_coding MGP_AJ_T0089044.1 MGP_AJ_G0033619.1 mouse_genomes_project 8 59296184 59300353 + Ddx60 protein_coding retained_intron MGP_AJ_T0089045.1 MGP_AJ_G0033619.1 mouse_genomes_project 8 59332682 59335589 + Ddx60 protein_coding retained_intron MGP_AJ_T0089046.1 MGP_AJ_G0033619.1 mouse_genomes_project 8 59336799 59346371 + Ddx60 protein_coding retained_intron MGP_AJ_T0088575.1 MGP_AJ_G0033470.1 mouse_genomes_project 8 23021390 23045018 - MGP_AJ_P0088575 Ash2l protein_coding nonsense_mediated_decay MGP_AJ_T0088576.1 MGP_AJ_G0033470.1 mouse_genomes_project 8 23021736 23045025 - MGP_AJ_P0088576 Ash2l protein_coding nonsense_mediated_decay MGP_AJ_T0088577.1 MGP_AJ_G0033470.1 mouse_genomes_project 8 23022266 23045052 - MGP_AJ_P0088577 Ash2l protein_coding protein_coding MGP_AJ_T0088578.1 MGP_AJ_G0033470.1 mouse_genomes_project 8 23028253 23029080 - Ash2l protein_coding retained_intron MGP_AJ_T0088579.1 MGP_AJ_G0033470.1 mouse_genomes_project 8 23028648 23034857 - Ash2l protein_coding retained_intron MGP_AJ_T0088580.1 MGP_AJ_G0033470.1 mouse_genomes_project 8 23032497 23034313 - Ash2l protein_coding processed_transcript MGP_AJ_T0005404.1 MGP_AJ_G0004580.1 mouse_genomes_project 8 122706229 122713874 - Gm15775 antisense antisense MGP_AJ_T0005366.1 MGP_AJ_G0004547.1 mouse_genomes_project 8 66393831 66415763 + Gm15716 antisense antisense MGP_AJ_T0090039.1 MGP_AJ_G0033921.1 mouse_genomes_project 8 90504478 90505479 + MGP_AJ_P0090039 Capns2 protein_coding protein_coding MGP_AJ_T0005353.1 MGP_AJ_G0004536.1 mouse_genomes_project 8 44380377 44391742 - 4930579M01Rik antisense antisense MGP_AJ_T0090185.1 MGP_AJ_G0033970.1 mouse_genomes_project 8 93132010 93174776 - MGP_AJ_P0090185 Csnk2a2 protein_coding protein_coding MGP_AJ_T0088253.1 MGP_AJ_G0033351.1 mouse_genomes_project 8 10020854 10050229 - MGP_AJ_P0088253 Pcid2 protein_coding protein_coding MGP_AJ_T0088254.1 MGP_AJ_G0033351.1 mouse_genomes_project 8 10020854 10050229 - MGP_AJ_P0088254 Pcid2 protein_coding nonsense_mediated_decay MGP_AJ_T0088255.1 MGP_AJ_G0033351.1 mouse_genomes_project 8 10023389 10031072 - Pcid2 protein_coding processed_transcript MGP_AJ_T0088256.1 MGP_AJ_G0033351.1 mouse_genomes_project 8 10023561 10049601 - Pcid2 protein_coding processed_transcript MGP_AJ_T0088257.1 MGP_AJ_G0033351.1 mouse_genomes_project 8 10029713 10042968 - MGP_AJ_P0088257 Pcid2 protein_coding nonsense_mediated_decay MGP_AJ_T0088258.1 MGP_AJ_G0033351.1 mouse_genomes_project 8 10029762 10049591 - MGP_AJ_P0088258 Pcid2 protein_coding nonsense_mediated_decay MGP_AJ_T0090036.1 MGP_AJ_G0033919.1 mouse_genomes_project 8 90430668 90456397 + MGP_AJ_P0090036 Mmp2 protein_coding protein_coding MGP_AJ_T0088781.1 MGP_AJ_G0033545.1 mouse_genomes_project 8 38652333 38693958 - MGP_AJ_P0088781 Asah1 protein_coding protein_coding MGP_AJ_T0088782.1 MGP_AJ_G0033545.1 mouse_genomes_project 8 38652795 38663804 - Asah1 protein_coding retained_intron MGP_AJ_T0088783.1 MGP_AJ_G0033545.1 mouse_genomes_project 8 38653461 38656005 - Asah1 protein_coding retained_intron MGP_AJ_T0088784.1 MGP_AJ_G0033545.1 mouse_genomes_project 8 38659946 38693820 - MGP_AJ_P0088784 Asah1 protein_coding protein_coding MGP_AJ_T0088785.1 MGP_AJ_G0033545.1 mouse_genomes_project 8 38667774 38693958 - MGP_AJ_P0088785 Asah1 protein_coding protein_coding MGP_AJ_T0088790.1 MGP_AJ_G0033550.1 mouse_genomes_project 8 40969851 40996424 - MGP_AJ_P0088790 protein_coding protein_coding MGP_AJ_T0088204.1 MGP_AJ_G0033342.1 mouse_genomes_project 8 9335719 9340550 + MGP_AJ_P0088204 Sox1 protein_coding protein_coding MGP_AJ_T0089094.1 MGP_AJ_G0033638.1 mouse_genomes_project 8 64864234 64865581 + MGP_AJ_P0089094 Nat1 protein_coding protein_coding MGP_AJ_T0005370.1 MGP_AJ_G0004550.1 mouse_genomes_project 8 77991270 77993902 - 4930505O20Rik antisense antisense MGP_AJ_T0090363.1 MGP_AJ_G0034039.1 mouse_genomes_project 8 103700376 103746192 - MGP_AJ_P0090363 Gfod2 protein_coding protein_coding MGP_AJ_T0090364.1 MGP_AJ_G0034039.1 mouse_genomes_project 8 103704007 103746158 - MGP_AJ_P0090364 Gfod2 protein_coding protein_coding MGP_AJ_T0090365.1 MGP_AJ_G0034039.1 mouse_genomes_project 8 103713931 103746124 - Gfod2 protein_coding processed_transcript MGP_AJ_T0088174.1 MGP_AJ_G0033332.1 mouse_genomes_project 8 8224413 8363437 + MGP_AJ_P0088174 Col4a2 protein_coding protein_coding MGP_AJ_T0088175.1 MGP_AJ_G0033332.1 mouse_genomes_project 8 8316772 8333113 + MGP_AJ_P0088175 Col4a2 protein_coding protein_coding MGP_AJ_T0088176.1 MGP_AJ_G0033332.1 mouse_genomes_project 8 8355258 8357852 + Col4a2 protein_coding processed_transcript MGP_AJ_T0089520.1 MGP_AJ_G0033762.1 mouse_genomes_project 8 69877255 69957338 - MGP_AJ_P0089520 Eps15l1 protein_coding protein_coding MGP_AJ_T0089158.1 MGP_AJ_G0033656.1 mouse_genomes_project 8 67118271 67126590 - MGP_AJ_P0089158 Zfp963 protein_coding protein_coding MGP_AJ_T0089160.1 MGP_AJ_G0033656.1 mouse_genomes_project 8 67119587 67126598 - MGP_AJ_P0089160 Zfp963 protein_coding protein_coding MGP_AJ_T0089286.1 MGP_AJ_G0033690.1 mouse_genomes_project 8 67889883 67901355 + MGP_AJ_P0089286 Crlf1 protein_coding protein_coding MGP_AJ_T0089287.1 MGP_AJ_G0033690.1 mouse_genomes_project 8 67890086 67897656 + MGP_AJ_P0089287 Crlf1 protein_coding protein_coding MGP_AJ_T0089288.1 MGP_AJ_G0033690.1 mouse_genomes_project 8 67898381 67901304 + MGP_AJ_P0089288 Crlf1 protein_coding protein_coding MGP_AJ_T0090184.1 MGP_AJ_G0033969.1 mouse_genomes_project 8 93106537 93120983 - MGP_AJ_P0090184 Cfap20 protein_coding protein_coding MGP_AJ_T0009191.1 MGP_AJ_G0007383.1 mouse_genomes_project 8 118928853 118938589 + Gm26537 lincRNA lincRNA MGP_AJ_T0015993.1 MGP_AJ_G0014088.1 mouse_genomes_project 8 39268174 39272026 + processed_pseudogene processed_pseudogene MGP_AJ_T0088409.1 MGP_AJ_G0033419.1 mouse_genomes_project 8 19136714 19138829 + MGP_AJ_P0088409 Defb13 protein_coding protein_coding MGP_AJ_T0005362.1 MGP_AJ_G0004544.1 mouse_genomes_project 8 65326263 65347539 + Gm15991 antisense antisense MGP_AJ_T0011010.1 MGP_AJ_G0009132.1 mouse_genomes_project 8 108642320 108642417 - Gm44489 miRNA miRNA MGP_AJ_T0089098.1 MGP_AJ_G0033641.1 mouse_genomes_project 8 65065410 65344062 - MGP_AJ_P0089098 Psd3 protein_coding protein_coding MGP_AJ_T0089099.1 MGP_AJ_G0033641.1 mouse_genomes_project 8 65065410 65344062 - MGP_AJ_P0089099 Psd3 protein_coding protein_coding MGP_AJ_T0089100.1 MGP_AJ_G0033641.1 mouse_genomes_project 8 65065417 65185586 - MGP_AJ_P0089100 Psd3 protein_coding protein_coding MGP_AJ_T0089101.1 MGP_AJ_G0033641.1 mouse_genomes_project 8 65072380 65344062 - MGP_AJ_P0089101 Psd3 protein_coding protein_coding MGP_AJ_T0089102.1 MGP_AJ_G0033641.1 mouse_genomes_project 8 65073214 65281008 - MGP_AJ_P0089102 Psd3 protein_coding protein_coding MGP_AJ_T0089103.1 MGP_AJ_G0033641.1 mouse_genomes_project 8 65087858 65185524 - MGP_AJ_P0089103 Psd3 protein_coding protein_coding MGP_AJ_T0089104.1 MGP_AJ_G0033641.1 mouse_genomes_project 8 65161803 65429161 - Psd3 protein_coding retained_intron MGP_AJ_T0089105.1 MGP_AJ_G0033641.1 mouse_genomes_project 8 65248613 65274196 - Psd3 protein_coding processed_transcript MGP_AJ_T0089106.1 MGP_AJ_G0033641.1 mouse_genomes_project 8 65252018 65429018 - MGP_AJ_P0089106 Psd3 protein_coding unknown_likely_coding MGP_AJ_T0089107.1 MGP_AJ_G0033641.1 mouse_genomes_project 8 65273723 65321384 - Psd3 protein_coding retained_intron MGP_AJ_T0100215.1 MGP_AJ_G0038181.1 mouse_genomes_project 8 64521937 64522061 - Gm24274 snRNA snRNA MGP_AJ_T0088092.1 MGP_AJ_G0033306.1 mouse_genomes_project 8 1100363 1121583 + protein_coding retained_intron MGP_AJ_T0088093.1 MGP_AJ_G0033306.1 mouse_genomes_project 8 1100363 1142692 + MGP_AJ_P0088093 protein_coding protein_coding MGP_AJ_T0088094.1 MGP_AJ_G0033306.1 mouse_genomes_project 8 1100363 1128342 + MGP_AJ_P0088094 protein_coding protein_coding MGP_AJ_T0088095.1 MGP_AJ_G0033306.1 mouse_genomes_project 8 1100370 1142867 + MGP_AJ_P0088095 protein_coding protein_coding MGP_AJ_T0088096.1 MGP_AJ_G0033306.1 mouse_genomes_project 8 1100383 1142687 + MGP_AJ_P0088096 protein_coding nonsense_mediated_decay MGP_AJ_T0088097.1 MGP_AJ_G0033306.1 mouse_genomes_project 8 1100397 1136369 + protein_coding retained_intron MGP_AJ_T0088098.1 MGP_AJ_G0033306.1 mouse_genomes_project 8 1100535 1142687 + MGP_AJ_P0088098 protein_coding protein_coding MGP_AJ_T0088099.1 MGP_AJ_G0033306.1 mouse_genomes_project 8 1121890 1122732 + protein_coding retained_intron MGP_AJ_T0088100.1 MGP_AJ_G0033306.1 mouse_genomes_project 8 1125932 1137720 + protein_coding processed_transcript MGP_AJ_T0088101.1 MGP_AJ_G0033306.1 mouse_genomes_project 8 1135440 1140366 + protein_coding retained_intron MGP_AJ_T0088102.1 MGP_AJ_G0033306.1 mouse_genomes_project 8 1138015 1142683 + protein_coding retained_intron MGP_AJ_T0088103.1 MGP_AJ_G0033306.1 mouse_genomes_project 8 1138259 1140981 + protein_coding retained_intron MGP_AJ_T0088104.1 MGP_AJ_G0033306.1 mouse_genomes_project 8 1140369 1141244 + protein_coding retained_intron MGP_AJ_T0088105.1 MGP_AJ_G0033306.1 mouse_genomes_project 8 1140889 1145898 + MGP_AJ_P0088105 protein_coding protein_coding MGP_AJ_T0100236.1 MGP_AJ_G0038202.1 mouse_genomes_project 8 110026590 110026694 + Gm23853 snRNA snRNA MGP_AJ_T0009132.1 MGP_AJ_G0007344.1 mouse_genomes_project 8 82206391 82210702 + Gm26664 lincRNA lincRNA MGP_AJ_T0088300.1 MGP_AJ_G0033365.1 mouse_genomes_project 8 10668856 10696768 + MGP_AJ_P0088300 4932443I19Rik protein_coding protein_coding MGP_AJ_T0009114.1 MGP_AJ_G0007329.1 mouse_genomes_project 8 62369988 62419680 - lincRNA lincRNA MGP_AJ_T0089529.1 MGP_AJ_G0033767.1 mouse_genomes_project 8 70028538 70084414 - MGP_AJ_P0089529 Med26 protein_coding protein_coding MGP_AJ_T0088639.1 MGP_AJ_G0033498.1 mouse_genomes_project 8 29069333 29172852 - MGP_AJ_P0088639 Nrg1 protein_coding protein_coding MGP_AJ_T0005325.1 MGP_AJ_G0004516.1 mouse_genomes_project 8 9772677 9776262 - Gm15350 antisense antisense MGP_AJ_T0005326.1 MGP_AJ_G0004516.1 mouse_genomes_project 8 9772677 9778211 - Gm15350 antisense antisense MGP_AJ_T0011021.1 MGP_AJ_G0009143.1 mouse_genomes_project 8 119382339 119382437 - Gm27530 miRNA miRNA MGP_AJ_T0090683.1 MGP_AJ_G0034153.1 mouse_genomes_project 8 115498725 115709120 + MGP_AJ_P0090683 Cmip protein_coding protein_coding MGP_AJ_T0090684.1 MGP_AJ_G0034153.1 mouse_genomes_project 8 115595098 115709120 + MGP_AJ_P0090684 Cmip protein_coding protein_coding MGP_AJ_T0005373.1 MGP_AJ_G0004553.1 mouse_genomes_project 8 89214829 89223095 - Gm3235 antisense antisense MGP_AJ_T0088920.1 MGP_AJ_G0033584.1 mouse_genomes_project 8 45177096 45177839 + MGP_AJ_P0088920 Cldn24 protein_coding protein_coding MGP_AJ_T0089410.1 MGP_AJ_G0033730.1 mouse_genomes_project 8 68940347 68943395 + Dda1 protein_coding processed_transcript MGP_AJ_T0089411.1 MGP_AJ_G0033730.1 mouse_genomes_project 8 68940347 68947247 + Dda1 protein_coding processed_transcript MGP_AJ_T0089412.1 MGP_AJ_G0033730.1 mouse_genomes_project 8 68940347 68943524 + Dda1 protein_coding retained_intron MGP_AJ_T0089413.1 MGP_AJ_G0033730.1 mouse_genomes_project 8 68940347 68947247 + Dda1 protein_coding processed_transcript MGP_AJ_T0089414.1 MGP_AJ_G0033730.1 mouse_genomes_project 8 68940347 68947247 + MGP_AJ_P0089414 Dda1 protein_coding protein_coding MGP_AJ_T0089415.1 MGP_AJ_G0033730.1 mouse_genomes_project 8 68940347 68947247 + MGP_AJ_P0089415 Dda1 protein_coding protein_coding MGP_AJ_T0089416.1 MGP_AJ_G0033730.1 mouse_genomes_project 8 68940353 68947247 + MGP_AJ_P0089416 Dda1 protein_coding protein_coding MGP_AJ_T0089417.1 MGP_AJ_G0033730.1 mouse_genomes_project 8 68940359 68943931 + Dda1 protein_coding retained_intron MGP_AJ_T0089418.1 MGP_AJ_G0033730.1 mouse_genomes_project 8 68940359 68946123 + Dda1 protein_coding retained_intron MGP_AJ_T0089419.1 MGP_AJ_G0033730.1 mouse_genomes_project 8 68940433 68943764 + Dda1 protein_coding retained_intron MGP_AJ_T0089420.1 MGP_AJ_G0033730.1 mouse_genomes_project 8 68941559 68947247 + Dda1 protein_coding processed_transcript MGP_AJ_T0088688.1 MGP_AJ_G0033512.1 mouse_genomes_project 8 31357570 31369061 - MGP_AJ_P0088688 Leprotl1 protein_coding protein_coding MGP_AJ_T0091013.1 MGP_AJ_G0034240.1 mouse_genomes_project 8 122031865 122033922 + Rhou protein_coding retained_intron MGP_AJ_T0091014.1 MGP_AJ_G0034240.1 mouse_genomes_project 8 122031865 122042070 + MGP_AJ_P0091014 Rhou protein_coding protein_coding MGP_AJ_T0009127.1 MGP_AJ_G0007340.1 mouse_genomes_project 8 79183634 79184832 - 4930579O11Rik lincRNA lincRNA MGP_AJ_T0009128.1 MGP_AJ_G0007340.1 mouse_genomes_project 8 79183662 79184878 - 4930579O11Rik lincRNA lincRNA MGP_AJ_T0089523.1 MGP_AJ_G0033764.1 mouse_genomes_project 8 69978428 69995030 + MGP_AJ_P0089523 1700030K09Rik protein_coding protein_coding MGP_AJ_T0089524.1 MGP_AJ_G0033764.1 mouse_genomes_project 8 69978480 69994670 + MGP_AJ_P0089524 1700030K09Rik protein_coding protein_coding MGP_AJ_T0089525.1 MGP_AJ_G0033764.1 mouse_genomes_project 8 69991918 69992680 + 1700030K09Rik protein_coding retained_intron MGP_AJ_T0090612.1 MGP_AJ_G0034123.1 mouse_genomes_project 8 109787174 109814471 + MGP_AJ_P0090612 Zfp1 protein_coding protein_coding MGP_AJ_T0011716.1 MGP_AJ_G0009838.1 mouse_genomes_project 8 28798508 28798732 - Gm23539 misc_RNA misc_RNA MGP_AJ_T0089031.1 MGP_AJ_G0033618.1 mouse_genomes_project 8 58816970 58903231 - MGP_AJ_P0089031 Palld protein_coding protein_coding MGP_AJ_T0089032.1 MGP_AJ_G0033618.1 mouse_genomes_project 8 58818789 59213414 - MGP_AJ_P0089032 Palld protein_coding protein_coding MGP_AJ_T0089033.1 MGP_AJ_G0033618.1 mouse_genomes_project 8 58818795 59070460 - MGP_AJ_P0089033 Palld protein_coding protein_coding MGP_AJ_T0089034.1 MGP_AJ_G0033618.1 mouse_genomes_project 8 58820470 58821446 - Palld protein_coding retained_intron MGP_AJ_T0089035.1 MGP_AJ_G0033618.1 mouse_genomes_project 8 58820566 59213435 - MGP_AJ_P0089035 Palld protein_coding protein_coding MGP_AJ_T0089036.1 MGP_AJ_G0033618.1 mouse_genomes_project 8 58821458 58896609 - MGP_AJ_P0089036 Palld protein_coding protein_coding MGP_AJ_T0089037.1 MGP_AJ_G0033618.1 mouse_genomes_project 8 58830880 58839749 - Palld protein_coding retained_intron MGP_AJ_T0089038.1 MGP_AJ_G0033618.1 mouse_genomes_project 8 58992265 59070469 - Palld protein_coding retained_intron MGP_AJ_T0089039.1 MGP_AJ_G0033618.1 mouse_genomes_project 8 59015969 59070460 - Palld protein_coding retained_intron MGP_AJ_T0088491.1 MGP_AJ_G0033450.1 mouse_genomes_project 8 21740860 21765120 - Ido2 protein_coding processed_transcript MGP_AJ_T0088492.1 MGP_AJ_G0033450.1 mouse_genomes_project 8 21741420 21787417 - MGP_AJ_P0088492 Ido2 protein_coding protein_coding MGP_AJ_T0088493.1 MGP_AJ_G0033450.1 mouse_genomes_project 8 21742420 21749767 - Ido2 protein_coding retained_intron MGP_AJ_T0088494.1 MGP_AJ_G0033450.1 mouse_genomes_project 8 21761280 21765077 - Ido2 protein_coding processed_transcript MGP_AJ_T0016021.1 MGP_AJ_G0014116.1 mouse_genomes_project 8 82705986 82706211 + processed_pseudogene processed_pseudogene MGP_AJ_T0009130.1 MGP_AJ_G0007342.1 mouse_genomes_project 8 81737738 81742311 - Gm26887 lincRNA lincRNA MGP_AJ_T0089197.1 MGP_AJ_G0033670.1 mouse_genomes_project 8 67459368 67466524 + MGP_AJ_P0089197 Tm6sf2 protein_coding protein_coding MGP_AJ_T0089198.1 MGP_AJ_G0033670.1 mouse_genomes_project 8 67459376 67466510 + MGP_AJ_P0089198 Tm6sf2 protein_coding protein_coding MGP_AJ_T0089199.1 MGP_AJ_G0033670.1 mouse_genomes_project 8 67460725 67462172 + Tm6sf2 protein_coding retained_intron MGP_AJ_T0089200.1 MGP_AJ_G0033670.1 mouse_genomes_project 8 67461886 67464587 + Tm6sf2 protein_coding retained_intron MGP_AJ_T0089201.1 MGP_AJ_G0033670.1 mouse_genomes_project 8 67463863 67465078 + Tm6sf2 protein_coding retained_intron MGP_AJ_T0088121.1 MGP_AJ_G0033310.1 mouse_genomes_project 8 1182898 1186108 + MGP_AJ_P0088121 Tgfbr3l protein_coding protein_coding MGP_AJ_T0088122.1 MGP_AJ_G0033310.1 mouse_genomes_project 8 1183317 1184206 + Tgfbr3l protein_coding processed_transcript MGP_AJ_T0088123.1 MGP_AJ_G0033310.1 mouse_genomes_project 8 1185013 1186108 + Tgfbr3l protein_coding processed_transcript MGP_AJ_T0101489.1 MGP_AJ_G0039455.1 mouse_genomes_project 8 54867738 54867852 + Gm25379 snoRNA snoRNA MGP_AJ_T0090686.1 MGP_AJ_G0034155.1 mouse_genomes_project 8 115916496 115926794 - MGP_AJ_P0090686 Sdr42e1 protein_coding protein_coding MGP_AJ_T0090687.1 MGP_AJ_G0034155.1 mouse_genomes_project 8 115916499 115928936 - MGP_AJ_P0090687 Sdr42e1 protein_coding protein_coding MGP_AJ_T0090688.1 MGP_AJ_G0034155.1 mouse_genomes_project 8 115918430 115928936 - MGP_AJ_P0090688 Sdr42e1 protein_coding protein_coding MGP_AJ_T0090723.1 MGP_AJ_G0034168.1 mouse_genomes_project 8 117887129 117891310 + MGP_AJ_P0090723 Adad2 protein_coding protein_coding MGP_AJ_T0089667.1 MGP_AJ_G0033818.1 mouse_genomes_project 8 81146675 81150425 + MGP_AJ_P0089667 Dnajb1 protein_coding protein_coding MGP_AJ_T0089466.1 MGP_AJ_G0033745.1 mouse_genomes_project 8 69168062 69178995 - MGP_AJ_P0089466 B3gnt3 protein_coding protein_coding MGP_AJ_T0091015.1 MGP_AJ_G0034241.1 mouse_genomes_project 8 122185999 122216047 + MGP_AJ_P0091015 Rab4a protein_coding protein_coding MGP_AJ_T0091016.1 MGP_AJ_G0034241.1 mouse_genomes_project 8 122186082 122215242 + MGP_AJ_P0091016 Rab4a protein_coding protein_coding MGP_AJ_T0089723.1 MGP_AJ_G0033835.1 mouse_genomes_project 8 81609488 81611545 - MGP_AJ_P0089723 protein_coding protein_coding MGP_AJ_T0088514.1 MGP_AJ_G0033455.1 mouse_genomes_project 8 22029679 22141428 - MGP_AJ_P0088514 Adam32 protein_coding protein_coding MGP_AJ_T0088515.1 MGP_AJ_G0033455.1 mouse_genomes_project 8 22029682 22052872 - Adam32 protein_coding retained_intron MGP_AJ_T0088516.1 MGP_AJ_G0033455.1 mouse_genomes_project 8 22029682 22060789 - MGP_AJ_P0088516 Adam32 protein_coding protein_coding MGP_AJ_T0088517.1 MGP_AJ_G0033455.1 mouse_genomes_project 8 22029685 22141419 - MGP_AJ_P0088517 Adam32 protein_coding protein_coding MGP_AJ_T0088518.1 MGP_AJ_G0033455.1 mouse_genomes_project 8 22029685 22073010 - MGP_AJ_P0088518 Adam32 protein_coding protein_coding MGP_AJ_T0088519.1 MGP_AJ_G0033455.1 mouse_genomes_project 8 22029744 22051744 - MGP_AJ_P0088519 Adam32 protein_coding nonsense_mediated_decay MGP_AJ_T0088520.1 MGP_AJ_G0033455.1 mouse_genomes_project 8 22031350 22141419 - MGP_AJ_P0088520 Adam32 protein_coding unknown_likely_coding MGP_AJ_T0088521.1 MGP_AJ_G0033455.1 mouse_genomes_project 8 22101761 22141405 - MGP_AJ_P0088521 Adam32 protein_coding nonsense_mediated_decay MGP_AJ_T0088522.1 MGP_AJ_G0033455.1 mouse_genomes_project 8 22112435 22141428 - Adam32 protein_coding retained_intron MGP_AJ_T0005322.1 MGP_AJ_G0004513.1 mouse_genomes_project 8 8098793 8115503 + Gm15418 antisense antisense MGP_AJ_T0089802.1 MGP_AJ_G0033855.1 mouse_genomes_project 8 82377818 82381869 - MGP_AJ_P0089802 Rad23a protein_coding protein_coding MGP_AJ_T0089803.1 MGP_AJ_G0033855.1 mouse_genomes_project 8 82378451 82384464 - MGP_AJ_P0089803 Rad23a protein_coding protein_coding MGP_AJ_T0089804.1 MGP_AJ_G0033855.1 mouse_genomes_project 8 82378709 82384488 - MGP_AJ_P0089804 Rad23a protein_coding protein_coding MGP_AJ_T0089805.1 MGP_AJ_G0033855.1 mouse_genomes_project 8 82379441 82384488 - MGP_AJ_P0089805 Rad23a protein_coding protein_coding MGP_AJ_T0089806.1 MGP_AJ_G0033855.1 mouse_genomes_project 8 82381543 82382488 - Rad23a protein_coding retained_intron MGP_AJ_T0089807.1 MGP_AJ_G0033855.1 mouse_genomes_project 8 82381556 82382502 - Rad23a protein_coding retained_intron MGP_AJ_T0089808.1 MGP_AJ_G0033855.1 mouse_genomes_project 8 82382120 82384459 - Rad23a protein_coding retained_intron MGP_AJ_T0102925.1 MGP_AJ_G0040665.1 mouse_genomes_project 8 18942229 18943056 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0088995.1 MGP_AJ_G0033609.1 mouse_genomes_project 8 56236928 56239470 + MGP_AJ_P0088995 BC030500 protein_coding protein_coding MGP_AJ_T0088996.1 MGP_AJ_G0033609.1 mouse_genomes_project 8 56237430 56238370 + MGP_AJ_P0088996 BC030500 protein_coding protein_coding MGP_AJ_T0088689.1 MGP_AJ_G0033513.1 mouse_genomes_project 8 31377945 31394638 + MGP_AJ_P0088689 Saraf protein_coding protein_coding MGP_AJ_T0089355.1 MGP_AJ_G0033713.1 mouse_genomes_project 8 68247134 68262201 - MGP_AJ_P0089355 Kcnn1 protein_coding protein_coding MGP_AJ_T0089356.1 MGP_AJ_G0033713.1 mouse_genomes_project 8 68247134 68262201 - MGP_AJ_P0089356 Kcnn1 protein_coding protein_coding MGP_AJ_T0089357.1 MGP_AJ_G0033713.1 mouse_genomes_project 8 68248241 68262145 - MGP_AJ_P0089357 Kcnn1 protein_coding unknown_likely_coding MGP_AJ_T0089998.1 MGP_AJ_G0033907.1 mouse_genomes_project 8 86605079 86622105 - MGP_AJ_P0089998 Sall1 protein_coding protein_coding MGP_AJ_T0088791.1 MGP_AJ_G0033551.1 mouse_genomes_project 8 40992582 40996424 - MGP_AJ_P0088791 protein_coding protein_coding MGP_AJ_T0089871.1 MGP_AJ_G0033871.1 mouse_genomes_project 8 82574455 82577904 + MGP_AJ_P0089871 2310036O22Rik protein_coding protein_coding MGP_AJ_T0090449.1 MGP_AJ_G0034076.1 mouse_genomes_project 8 105084878 105091748 - MGP_AJ_P0090449 Tmed6 protein_coding protein_coding MGP_AJ_T0089207.1 MGP_AJ_G0033675.1 mouse_genomes_project 8 67526272 67534023 + MGP_AJ_P0089207 protein_coding protein_coding MGP_AJ_T0089208.1 MGP_AJ_G0033675.1 mouse_genomes_project 8 67526480 67532302 + protein_coding retained_intron MGP_AJ_T0089209.1 MGP_AJ_G0033675.1 mouse_genomes_project 8 67526484 67555071 + MGP_AJ_P0089209 protein_coding protein_coding MGP_AJ_T0089210.1 MGP_AJ_G0033675.1 mouse_genomes_project 8 67526486 67532316 + MGP_AJ_P0089210 protein_coding nonsense_mediated_decay MGP_AJ_T0089211.1 MGP_AJ_G0033675.1 mouse_genomes_project 8 67526496 67534028 + MGP_AJ_P0089211 protein_coding nonsense_mediated_decay MGP_AJ_T0089212.1 MGP_AJ_G0033675.1 mouse_genomes_project 8 67527050 67534086 + MGP_AJ_P0089212 protein_coding protein_coding MGP_AJ_T0015998.1 MGP_AJ_G0014093.1 mouse_genomes_project 8 56023792 56024734 - processed_pseudogene processed_pseudogene MGP_AJ_T0088153.1 MGP_AJ_G0033317.1 mouse_genomes_project 8 1532001 1548904 + MGP_AJ_P0088153 Zfp958 protein_coding protein_coding MGP_AJ_T0088154.1 MGP_AJ_G0033317.1 mouse_genomes_project 8 1545194 1548735 + MGP_AJ_P0088154 Zfp958 protein_coding protein_coding MGP_AJ_T0090502.1 MGP_AJ_G0034092.1 mouse_genomes_project 8 107783725 107795006 - MGP_AJ_P0090502 Atxn1l protein_coding protein_coding MGP_AJ_T0088965.1 MGP_AJ_G0033599.1 mouse_genomes_project 8 53284904 53394658 + Glra3 protein_coding processed_transcript MGP_AJ_T0088966.1 MGP_AJ_G0033599.1 mouse_genomes_project 8 53284953 53472202 + MGP_AJ_P0088966 Glra3 protein_coding protein_coding MGP_AJ_T0098745.1 MGP_AJ_G0036729.1 mouse_genomes_project 8 113270340 113270440 - Gm22556 rRNA rRNA MGP_AJ_T0089744.1 MGP_AJ_G0033845.1 mouse_genomes_project 8 81803191 81815289 - MGP_AJ_P0089744 Ccdc130 protein_coding protein_coding MGP_AJ_T0089745.1 MGP_AJ_G0033845.1 mouse_genomes_project 8 81803200 81806805 - Ccdc130 protein_coding retained_intron MGP_AJ_T0089746.1 MGP_AJ_G0033845.1 mouse_genomes_project 8 81804013 81811716 - MGP_AJ_P0089746 Ccdc130 protein_coding nonsense_mediated_decay MGP_AJ_T0089747.1 MGP_AJ_G0033845.1 mouse_genomes_project 8 81805294 81807044 - Ccdc130 protein_coding retained_intron MGP_AJ_T0089748.1 MGP_AJ_G0033845.1 mouse_genomes_project 8 81808805 81815253 - MGP_AJ_P0089748 Ccdc130 protein_coding protein_coding MGP_AJ_T0089749.1 MGP_AJ_G0033845.1 mouse_genomes_project 8 81809079 81815250 - Ccdc130 protein_coding retained_intron MGP_AJ_T0088599.1 MGP_AJ_G0033477.1 mouse_genomes_project 8 23365465 23370194 + MGP_AJ_P0088599 Thap1 protein_coding protein_coding MGP_AJ_T0088600.1 MGP_AJ_G0033477.1 mouse_genomes_project 8 23365486 23370029 + MGP_AJ_P0088600 Thap1 protein_coding protein_coding MGP_AJ_T0088601.1 MGP_AJ_G0033477.1 mouse_genomes_project 8 23365508 23366666 + Thap1 protein_coding retained_intron MGP_AJ_T0090057.1 MGP_AJ_G0033928.1 mouse_genomes_project 8 90926701 90950380 - MGP_AJ_P0090057 Ces1f protein_coding protein_coding MGP_AJ_T0090058.1 MGP_AJ_G0033928.1 mouse_genomes_project 8 90927053 90929205 - Ces1f protein_coding retained_intron MGP_AJ_T0090059.1 MGP_AJ_G0033928.1 mouse_genomes_project 8 90936079 90937971 - Ces1f protein_coding retained_intron MGP_AJ_T0090060.1 MGP_AJ_G0033928.1 mouse_genomes_project 8 90936531 90938098 - Ces1f protein_coding retained_intron MGP_AJ_T0090061.1 MGP_AJ_G0033928.1 mouse_genomes_project 8 90944498 90945921 - Ces1f protein_coding retained_intron MGP_AJ_T0090062.1 MGP_AJ_G0033928.1 mouse_genomes_project 8 90944807 90950360 - MGP_AJ_P0090062 Ces1f protein_coding nonsense_mediated_decay MGP_AJ_T0088728.1 MGP_AJ_G0033532.1 mouse_genomes_project 8 37733114 37790123 + MGP_AJ_P0088728 Zdhhc2 protein_coding protein_coding MGP_AJ_T0088729.1 MGP_AJ_G0033532.1 mouse_genomes_project 8 37733120 37814955 + MGP_AJ_P0088729 Zdhhc2 protein_coding protein_coding MGP_AJ_T0088730.1 MGP_AJ_G0033532.1 mouse_genomes_project 8 37733121 37774842 + Zdhhc2 protein_coding retained_intron MGP_AJ_T0088731.1 MGP_AJ_G0033532.1 mouse_genomes_project 8 37733139 37788662 + MGP_AJ_P0088731 Zdhhc2 protein_coding protein_coding MGP_AJ_T0088732.1 MGP_AJ_G0033532.1 mouse_genomes_project 8 37733403 37763248 + Zdhhc2 protein_coding processed_transcript MGP_AJ_T0088740.1 MGP_AJ_G0033532.1 mouse_genomes_project 8 37805216 37814957 + Zdhhc2 protein_coding processed_transcript MGP_AJ_T0101511.1 MGP_AJ_G0039477.1 mouse_genomes_project 8 93435698 93435831 - Gm26265 snoRNA snoRNA MGP_AJ_T0088136.1 MGP_AJ_G0033315.1 mouse_genomes_project 8 1259831 1297460 + MGP_AJ_P0088136 Ccl25 protein_coding nonsense_mediated_decay MGP_AJ_T0088137.1 MGP_AJ_G0033315.1 mouse_genomes_project 8 1259848 1283263 + MGP_AJ_P0088137 Ccl25 protein_coding non_stop_decay MGP_AJ_T0088138.1 MGP_AJ_G0033315.1 mouse_genomes_project 8 1259851 1283263 + MGP_AJ_P0088138 Ccl25 protein_coding nonsense_mediated_decay MGP_AJ_T0088139.1 MGP_AJ_G0033315.1 mouse_genomes_project 8 1259854 1297116 + MGP_AJ_P0088139 Ccl25 protein_coding protein_coding MGP_AJ_T0088140.1 MGP_AJ_G0033315.1 mouse_genomes_project 8 1259857 1288572 + MGP_AJ_P0088140 Ccl25 protein_coding protein_coding MGP_AJ_T0088141.1 MGP_AJ_G0033315.1 mouse_genomes_project 8 1259862 1267921 + Ccl25 protein_coding processed_transcript MGP_AJ_T0088142.1 MGP_AJ_G0033315.1 mouse_genomes_project 8 1284062 1297482 + MGP_AJ_P0088142 Ccl25 protein_coding protein_coding MGP_AJ_T0088143.1 MGP_AJ_G0033315.1 mouse_genomes_project 8 1284062 1295449 + MGP_AJ_P0088143 Ccl25 protein_coding protein_coding MGP_AJ_T0018457.1 MGP_AJ_G0015690.1 mouse_genomes_project 8 42398288 42402738 - AY512931 processed_transcript processed_transcript MGP_AJ_T0090094.1 MGP_AJ_G0033939.1 mouse_genomes_project 8 91854955 91855905 + MGP_AJ_P0090094 Mt2 protein_coding protein_coding MGP_AJ_T0089324.1 MGP_AJ_G0033696.1 mouse_genomes_project 8 67993694 67996502 + MGP_AJ_P0089324 Isyna1 protein_coding protein_coding MGP_AJ_T0090123.1 MGP_AJ_G0033950.1 mouse_genomes_project 8 92437889 92444007 + MGP_AJ_P0090123 Ccl22 protein_coding protein_coding MGP_AJ_T0090124.1 MGP_AJ_G0033950.1 mouse_genomes_project 8 92437979 92442181 + Ccl22 protein_coding processed_transcript MGP_AJ_T0088400.1 MGP_AJ_G0033410.1 mouse_genomes_project 8 18884713 18887213 - MGP_AJ_P0088400 Gm14851 protein_coding protein_coding MGP_AJ_T0090438.1 MGP_AJ_G0034072.1 mouse_genomes_project 8 105055042 105069042 + MGP_AJ_P0090438 Vps4a protein_coding protein_coding MGP_AJ_T0090439.1 MGP_AJ_G0034072.1 mouse_genomes_project 8 105062300 105065968 + Vps4a protein_coding retained_intron MGP_AJ_T0090440.1 MGP_AJ_G0034072.1 mouse_genomes_project 8 105065535 105066387 + Vps4a protein_coding retained_intron MGP_AJ_T0005371.1 MGP_AJ_G0004551.1 mouse_genomes_project 8 82155190 82161150 - Gm16183 antisense antisense MGP_AJ_T0090271.1 MGP_AJ_G0034005.1 mouse_genomes_project 8 102983784 102997867 + MGP_AJ_P0090271 Ces2h protein_coding protein_coding MGP_AJ_T0098741.1 MGP_AJ_G0036725.1 mouse_genomes_project 8 52237578 52237697 + n-R5s98 rRNA rRNA MGP_AJ_T0016009.1 MGP_AJ_G0014104.1 mouse_genomes_project 8 76336693 76337168 - processed_pseudogene processed_pseudogene MGP_AJ_T0089647.1 MGP_AJ_G0033810.1 mouse_genomes_project 8 80673500 80776820 + MGP_AJ_P0089647 Tbc1d9 protein_coding protein_coding MGP_AJ_T0089648.1 MGP_AJ_G0033810.1 mouse_genomes_project 8 80674008 80777333 + MGP_AJ_P0089648 Tbc1d9 protein_coding protein_coding MGP_AJ_T0089649.1 MGP_AJ_G0033810.1 mouse_genomes_project 8 80763447 80775347 + Tbc1d9 protein_coding retained_intron MGP_AJ_T0016041.1 MGP_AJ_G0014136.1 mouse_genomes_project 8 124889762 124891121 - processed_pseudogene processed_pseudogene MGP_AJ_T0090160.1 MGP_AJ_G0033962.1 mouse_genomes_project 8 92777382 92796061 + MGP_AJ_P0090160 Katnb1 protein_coding protein_coding MGP_AJ_T0090098.1 MGP_AJ_G0033942.1 mouse_genomes_project 8 92012982 92050004 + MGP_AJ_P0090098 Slc12a3 protein_coding protein_coding MGP_AJ_T0090503.1 MGP_AJ_G0034093.1 mouse_genomes_project 8 107835125 107921782 + MGP_AJ_P0090503 Ap1g1 protein_coding protein_coding MGP_AJ_T0090504.1 MGP_AJ_G0034093.1 mouse_genomes_project 8 107835468 107862768 + Ap1g1 protein_coding processed_transcript MGP_AJ_T0090505.1 MGP_AJ_G0034093.1 mouse_genomes_project 8 107835477 107918936 + MGP_AJ_P0090505 Ap1g1 protein_coding protein_coding MGP_AJ_T0090506.1 MGP_AJ_G0034093.1 mouse_genomes_project 8 107900866 107907364 + Ap1g1 protein_coding retained_intron MGP_AJ_T0090507.1 MGP_AJ_G0034093.1 mouse_genomes_project 8 107916025 107917868 + Ap1g1 protein_coding retained_intron MGP_AJ_T0090508.1 MGP_AJ_G0034093.1 mouse_genomes_project 8 107920685 107921781 + MGP_AJ_P0090508 Ap1g1 protein_coding protein_coding MGP_AJ_T0091003.1 MGP_AJ_G0034237.1 mouse_genomes_project 8 121832915 121880962 + MGP_AJ_P0091003 Afg3l1 protein_coding protein_coding MGP_AJ_T0091004.1 MGP_AJ_G0034237.1 mouse_genomes_project 8 121832915 121880962 + MGP_AJ_P0091004 Afg3l1 protein_coding nonsense_mediated_decay MGP_AJ_T0091005.1 MGP_AJ_G0034237.1 mouse_genomes_project 8 121832952 121857180 + Afg3l1 protein_coding retained_intron MGP_AJ_T0091006.1 MGP_AJ_G0034237.1 mouse_genomes_project 8 121856252 121865995 + Afg3l1 protein_coding processed_transcript MGP_AJ_T0091007.1 MGP_AJ_G0034237.1 mouse_genomes_project 8 121870006 121875979 + Afg3l1 protein_coding retained_intron MGP_AJ_T0091008.1 MGP_AJ_G0034237.1 mouse_genomes_project 8 121878131 121878661 + Afg3l1 protein_coding retained_intron MGP_AJ_T0009073.1 MGP_AJ_G0007296.1 mouse_genomes_project 8 7916877 7963840 + 9530052E02Rik lincRNA lincRNA MGP_AJ_T0009074.1 MGP_AJ_G0007296.1 mouse_genomes_project 8 7958881 7963845 + 9530052E02Rik lincRNA lincRNA MGP_AJ_T0016025.1 MGP_AJ_G0014120.1 mouse_genomes_project 8 92524158 92524957 + processed_pseudogene processed_pseudogene MGP_AJ_T0090325.1 MGP_AJ_G0034024.1 mouse_genomes_project 8 103351798 103354085 + MGP_AJ_P0090325 Plekhg4 protein_coding protein_coding MGP_AJ_T0090326.1 MGP_AJ_G0034024.1 mouse_genomes_project 8 103353428 103361384 + MGP_AJ_P0090326 Plekhg4 protein_coding nonsense_mediated_decay MGP_AJ_T0090327.1 MGP_AJ_G0034024.1 mouse_genomes_project 8 103353905 103360766 + MGP_AJ_P0090327 Plekhg4 protein_coding protein_coding MGP_AJ_T0090328.1 MGP_AJ_G0034024.1 mouse_genomes_project 8 103353905 103361387 + MGP_AJ_P0090328 Plekhg4 protein_coding protein_coding MGP_AJ_T0090329.1 MGP_AJ_G0034024.1 mouse_genomes_project 8 103359018 103361380 + Plekhg4 protein_coding retained_intron MGP_AJ_T0009112.1 MGP_AJ_G0007327.1 mouse_genomes_project 8 58288846 58291318 + B230317F23Rik lincRNA lincRNA MGP_AJ_T0091083.1 MGP_AJ_G0034268.1 mouse_genomes_project 8 124143612 124158948 + Ntpcr protein_coding processed_transcript MGP_AJ_T0091084.1 MGP_AJ_G0034268.1 mouse_genomes_project 8 124143677 124161458 + MGP_AJ_P0091084 Ntpcr protein_coding protein_coding MGP_AJ_T0091085.1 MGP_AJ_G0034268.1 mouse_genomes_project 8 124143681 124151785 + Ntpcr protein_coding processed_transcript MGP_AJ_T0091086.1 MGP_AJ_G0034268.1 mouse_genomes_project 8 124146739 124161683 + Ntpcr protein_coding processed_transcript MGP_AJ_T0091087.1 MGP_AJ_G0034268.1 mouse_genomes_project 8 124147851 124161884 + MGP_AJ_P0091087 Ntpcr protein_coding protein_coding MGP_AJ_T0091088.1 MGP_AJ_G0034268.1 mouse_genomes_project 8 124147881 124149978 + Ntpcr protein_coding retained_intron MGP_AJ_T0091089.1 MGP_AJ_G0034268.1 mouse_genomes_project 8 124147886 124152828 + MGP_AJ_P0091089 Ntpcr protein_coding protein_coding MGP_AJ_T0091090.1 MGP_AJ_G0034268.1 mouse_genomes_project 8 124149483 124161646 + MGP_AJ_P0091090 Ntpcr protein_coding protein_coding MGP_AJ_T0090345.1 MGP_AJ_G0034031.1 mouse_genomes_project 8 103548699 103622553 - MGP_AJ_P0090345 Agrp protein_coding protein_coding MGP_AJ_T0090346.1 MGP_AJ_G0034031.1 mouse_genomes_project 8 103548699 103550299 - MGP_AJ_P0090346 Agrp protein_coding protein_coding MGP_AJ_T0090347.1 MGP_AJ_G0034031.1 mouse_genomes_project 8 103548799 103563040 - MGP_AJ_P0090347 Agrp protein_coding protein_coding MGP_AJ_T0089086.1 MGP_AJ_G0033633.1 mouse_genomes_project 8 63795845 63809511 - Tma16 protein_coding retained_intron MGP_AJ_T0089087.1 MGP_AJ_G0033633.1 mouse_genomes_project 8 63798095 63809533 - MGP_AJ_P0089087 Tma16 protein_coding protein_coding MGP_AJ_T0089088.1 MGP_AJ_G0033633.1 mouse_genomes_project 8 63804089 63809544 - Tma16 protein_coding retained_intron MGP_AJ_T0090520.1 MGP_AJ_G0034101.1 mouse_genomes_project 8 108212445 108240221 - MGP_AJ_P0090520 Calb2 protein_coding protein_coding MGP_AJ_T0090425.1 MGP_AJ_G0034064.1 mouse_genomes_project 8 104505052 104511802 + MGP_AJ_P0090425 6030452D12Rik protein_coding protein_coding MGP_AJ_T0088407.1 MGP_AJ_G0033417.1 mouse_genomes_project 8 19118844 19121756 - MGP_AJ_P0088407 Defb15 protein_coding protein_coding MGP_AJ_T0088206.1 MGP_AJ_G0033344.1 mouse_genomes_project 8 9512529 9541182 + MGP_AJ_P0088206 Spaca7 protein_coding protein_coding MGP_AJ_T0090233.1 MGP_AJ_G0033990.1 mouse_genomes_project 8 102254446 102303905 - MGP_AJ_P0090233 Cmtm4 protein_coding protein_coding MGP_AJ_T0015961.1 MGP_AJ_G0014056.1 mouse_genomes_project 8 7716346 7716787 - processed_pseudogene processed_pseudogene MGP_AJ_T0005342.1 MGP_AJ_G0004527.1 mouse_genomes_project 8 20338003 20348756 - Gm15816 antisense antisense MGP_AJ_T0088733.1 MGP_AJ_G0033533.1 mouse_genomes_project 8 37796894 37816444 - MGP_AJ_P0088733 Cnot7 protein_coding protein_coding MGP_AJ_T0088734.1 MGP_AJ_G0033533.1 mouse_genomes_project 8 37796896 37820539 - MGP_AJ_P0088734 Cnot7 protein_coding protein_coding MGP_AJ_T0088735.1 MGP_AJ_G0033533.1 mouse_genomes_project 8 37796897 37816408 - Cnot7 protein_coding retained_intron MGP_AJ_T0088736.1 MGP_AJ_G0033533.1 mouse_genomes_project 8 37796901 37816408 - MGP_AJ_P0088736 Cnot7 protein_coding protein_coding MGP_AJ_T0088737.1 MGP_AJ_G0033533.1 mouse_genomes_project 8 37797391 37815993 - MGP_AJ_P0088737 Cnot7 protein_coding protein_coding MGP_AJ_T0088738.1 MGP_AJ_G0033533.1 mouse_genomes_project 8 37798369 37805765 - Cnot7 protein_coding processed_transcript MGP_AJ_T0088739.1 MGP_AJ_G0033533.1 mouse_genomes_project 8 37799986 37812393 - Cnot7 protein_coding retained_intron MGP_AJ_T0088741.1 MGP_AJ_G0033533.1 mouse_genomes_project 8 37805425 37812310 - Cnot7 protein_coding processed_transcript MGP_AJ_T0088742.1 MGP_AJ_G0033533.1 mouse_genomes_project 8 37812042 37816412 - Cnot7 protein_coding processed_transcript MGP_AJ_T0088743.1 MGP_AJ_G0033533.1 mouse_genomes_project 8 37814711 37820527 - Cnot7 protein_coding processed_transcript MGP_AJ_T0088744.1 MGP_AJ_G0033533.1 mouse_genomes_project 8 37814791 37815993 - Cnot7 protein_coding processed_transcript MGP_AJ_T0100200.1 MGP_AJ_G0038166.1 mouse_genomes_project 8 24671621 24671728 - Gm24410 snRNA snRNA MGP_AJ_T0089962.1 MGP_AJ_G0033898.1 mouse_genomes_project 8 85673059 85690613 + MGP_AJ_P0089962 Cnep1r1 protein_coding protein_coding MGP_AJ_T0089963.1 MGP_AJ_G0033898.1 mouse_genomes_project 8 85673068 85686367 + Cnep1r1 protein_coding processed_transcript MGP_AJ_T0089964.1 MGP_AJ_G0033898.1 mouse_genomes_project 8 85673077 85690617 + MGP_AJ_P0089964 Cnep1r1 protein_coding nonsense_mediated_decay MGP_AJ_T0089965.1 MGP_AJ_G0033898.1 mouse_genomes_project 8 85673090 85689988 + Cnep1r1 protein_coding retained_intron MGP_AJ_T0089966.1 MGP_AJ_G0033898.1 mouse_genomes_project 8 85673090 85687199 + MGP_AJ_P0089966 Cnep1r1 protein_coding protein_coding MGP_AJ_T0089967.1 MGP_AJ_G0033898.1 mouse_genomes_project 8 85673097 85686582 + MGP_AJ_P0089967 Cnep1r1 protein_coding protein_coding MGP_AJ_T0088663.1 MGP_AJ_G0033509.1 mouse_genomes_project 8 31013440 31027676 - MGP_AJ_P0088663 Rbpms protein_coding unknown_likely_coding MGP_AJ_T0088664.1 MGP_AJ_G0033509.1 mouse_genomes_project 8 31013444 31163711 - MGP_AJ_P0088664 Rbpms protein_coding protein_coding MGP_AJ_T0088665.1 MGP_AJ_G0033509.1 mouse_genomes_project 8 31013445 31163699 - MGP_AJ_P0088665 Rbpms protein_coding protein_coding MGP_AJ_T0088666.1 MGP_AJ_G0033509.1 mouse_genomes_project 8 31013448 31163664 - MGP_AJ_P0088666 Rbpms protein_coding protein_coding MGP_AJ_T0088667.1 MGP_AJ_G0033509.1 mouse_genomes_project 8 31014584 31163674 - MGP_AJ_P0088667 Rbpms protein_coding nonsense_mediated_decay MGP_AJ_T0088668.1 MGP_AJ_G0033509.1 mouse_genomes_project 8 31014855 31075572 - MGP_AJ_P0088668 Rbpms protein_coding nonsense_mediated_decay MGP_AJ_T0088669.1 MGP_AJ_G0033509.1 mouse_genomes_project 8 31014864 31037569 - MGP_AJ_P0088669 Rbpms protein_coding nonsense_mediated_decay MGP_AJ_T0088670.1 MGP_AJ_G0033509.1 mouse_genomes_project 8 31014867 31037532 - MGP_AJ_P0088670 Rbpms protein_coding nonsense_mediated_decay MGP_AJ_T0088671.1 MGP_AJ_G0033509.1 mouse_genomes_project 8 31014869 31084856 - Rbpms protein_coding processed_transcript MGP_AJ_T0088672.1 MGP_AJ_G0033509.1 mouse_genomes_project 8 31014875 31028007 - Rbpms protein_coding retained_intron MGP_AJ_T0088673.1 MGP_AJ_G0033509.1 mouse_genomes_project 8 31034674 31163663 - MGP_AJ_P0088673 Rbpms protein_coding protein_coding MGP_AJ_T0088674.1 MGP_AJ_G0033509.1 mouse_genomes_project 8 31037474 31074330 - MGP_AJ_P0088674 Rbpms protein_coding protein_coding MGP_AJ_T0088675.1 MGP_AJ_G0033509.1 mouse_genomes_project 8 31037496 31122109 - MGP_AJ_P0088675 Rbpms protein_coding protein_coding MGP_AJ_T0088676.1 MGP_AJ_G0033509.1 mouse_genomes_project 8 31095138 31124111 - Rbpms protein_coding processed_transcript MGP_AJ_T0089671.1 MGP_AJ_G0033821.1 mouse_genomes_project 8 81209734 81239089 - MGP_AJ_P0089671 Pkn1 protein_coding protein_coding MGP_AJ_T0089672.1 MGP_AJ_G0033821.1 mouse_genomes_project 8 81210063 81233981 - MGP_AJ_P0089672 Pkn1 protein_coding protein_coding MGP_AJ_T0089673.1 MGP_AJ_G0033821.1 mouse_genomes_project 8 81210071 81239007 - MGP_AJ_P0089673 Pkn1 protein_coding nonsense_mediated_decay MGP_AJ_T0089674.1 MGP_AJ_G0033821.1 mouse_genomes_project 8 81210099 81215503 - Pkn1 protein_coding retained_intron MGP_AJ_T0089675.1 MGP_AJ_G0033821.1 mouse_genomes_project 8 81210559 81211753 - Pkn1 protein_coding processed_transcript MGP_AJ_T0089676.1 MGP_AJ_G0033821.1 mouse_genomes_project 8 81212999 81213566 - Pkn1 protein_coding retained_intron MGP_AJ_T0089677.1 MGP_AJ_G0033821.1 mouse_genomes_project 8 81213452 81217743 - Pkn1 protein_coding processed_transcript MGP_AJ_T0089678.1 MGP_AJ_G0033821.1 mouse_genomes_project 8 81217691 81221542 - Pkn1 protein_coding retained_intron MGP_AJ_T0089679.1 MGP_AJ_G0033821.1 mouse_genomes_project 8 81229836 81239077 - Pkn1 protein_coding retained_intron MGP_AJ_T0089534.1 MGP_AJ_G0033770.1 mouse_genomes_project 8 70161092 70210072 + MGP_AJ_P0089534 Nwd1 protein_coding protein_coding MGP_AJ_T0089535.1 MGP_AJ_G0033770.1 mouse_genomes_project 8 70161103 70224411 + MGP_AJ_P0089535 Nwd1 protein_coding nonsense_mediated_decay MGP_AJ_T0089536.1 MGP_AJ_G0033770.1 mouse_genomes_project 8 70161145 70228300 + MGP_AJ_P0089536 Nwd1 protein_coding protein_coding MGP_AJ_T0089537.1 MGP_AJ_G0033770.1 mouse_genomes_project 8 70161152 70231155 + MGP_AJ_P0089537 Nwd1 protein_coding protein_coding MGP_AJ_T0089538.1 MGP_AJ_G0033770.1 mouse_genomes_project 8 70167981 70224481 + MGP_AJ_P0089538 Nwd1 protein_coding nonsense_mediated_decay MGP_AJ_T0089539.1 MGP_AJ_G0033770.1 mouse_genomes_project 8 70171581 70224442 + MGP_AJ_P0089539 Nwd1 protein_coding protein_coding MGP_AJ_T0089540.1 MGP_AJ_G0033770.1 mouse_genomes_project 8 70198040 70209471 + Nwd1 protein_coding processed_transcript MGP_AJ_T0098742.1 MGP_AJ_G0036726.1 mouse_genomes_project 8 61443994 61444115 + Gm22586 rRNA rRNA MGP_AJ_T0090089.1 MGP_AJ_G0033936.1 mouse_genomes_project 8 91748254 91779126 - MGP_AJ_P0090089 Bbs2 protein_coding protein_coding MGP_AJ_T0090090.1 MGP_AJ_G0033936.1 mouse_genomes_project 8 91748444 91750514 - Bbs2 protein_coding processed_transcript MGP_AJ_T0090091.1 MGP_AJ_G0033936.1 mouse_genomes_project 8 91755474 91760091 - Bbs2 protein_coding processed_transcript MGP_AJ_T0089047.1 MGP_AJ_G0033620.1 mouse_genomes_project 8 59367544 59428600 - MGP_AJ_P0089047 Anxa10 protein_coding protein_coding MGP_AJ_T0089048.1 MGP_AJ_G0033620.1 mouse_genomes_project 8 59368023 59428606 - MGP_AJ_P0089048 Anxa10 protein_coding protein_coding MGP_AJ_T0088723.1 MGP_AJ_G0033530.1 mouse_genomes_project 8 37585847 37593660 - MGP_AJ_P0088723 Fgf20 protein_coding protein_coding MGP_AJ_T0088724.1 MGP_AJ_G0033530.1 mouse_genomes_project 8 37586406 37621838 - MGP_AJ_P0088724 Fgf20 protein_coding protein_coding MGP_AJ_T0089093.1 MGP_AJ_G0033637.1 mouse_genomes_project 8 64182691 64212879 + MGP_AJ_P0089093 Naf1 protein_coding protein_coding MGP_AJ_T0088694.1 MGP_AJ_G0033518.1 mouse_genomes_project 8 32711800 32735958 - MGP_AJ_P0088694 Eri1 protein_coding protein_coding MGP_AJ_T0090065.1 MGP_AJ_G0033931.1 mouse_genomes_project 8 91173645 91208279 - MGP_AJ_P0090065 Ces5a protein_coding protein_coding MGP_AJ_T0009140.1 MGP_AJ_G0007351.1 mouse_genomes_project 8 84737551 84829723 + Gm27169 lincRNA lincRNA MGP_AJ_T0015973.1 MGP_AJ_G0014068.1 mouse_genomes_project 8 18015748 18016893 - processed_pseudogene processed_pseudogene MGP_AJ_T0088199.1 MGP_AJ_G0033340.1 mouse_genomes_project 8 8775588 8791229 + MGP_AJ_P0088199 Tex29 protein_coding protein_coding MGP_AJ_T0088200.1 MGP_AJ_G0033340.1 mouse_genomes_project 8 8775725 8779273 + Tex29 protein_coding processed_transcript MGP_AJ_T0088201.1 MGP_AJ_G0033340.1 mouse_genomes_project 8 8776033 8791173 + MGP_AJ_P0088201 Tex29 protein_coding protein_coding MGP_AJ_T0088202.1 MGP_AJ_G0033340.1 mouse_genomes_project 8 8777175 8791225 + Tex29 protein_coding processed_transcript MGP_AJ_T0009110.1 MGP_AJ_G0007325.1 mouse_genomes_project 8 54649905 54658414 + lincRNA lincRNA MGP_AJ_T0089990.1 MGP_AJ_G0033904.1 mouse_genomes_project 8 86192684 86202096 - MGP_AJ_P0089990 Snx20 protein_coding protein_coding MGP_AJ_T0088802.1 MGP_AJ_G0033555.1 mouse_genomes_project 8 42608185 42635098 - MGP_AJ_P0088802 Klkb1 protein_coding protein_coding MGP_AJ_T0088178.1 MGP_AJ_G0033334.1 mouse_genomes_project 8 8414465 8430877 + MGP_AJ_P0088178 Carkd protein_coding protein_coding MGP_AJ_T0088179.1 MGP_AJ_G0033334.1 mouse_genomes_project 8 8414526 8432550 + MGP_AJ_P0088179 Carkd protein_coding nonsense_mediated_decay MGP_AJ_T0088180.1 MGP_AJ_G0033334.1 mouse_genomes_project 8 8414527 8430877 + MGP_AJ_P0088180 Carkd protein_coding protein_coding MGP_AJ_T0088181.1 MGP_AJ_G0033334.1 mouse_genomes_project 8 8414552 8424016 + Carkd protein_coding retained_intron MGP_AJ_T0088182.1 MGP_AJ_G0033334.1 mouse_genomes_project 8 8414592 8427826 + Carkd protein_coding retained_intron MGP_AJ_T0088183.1 MGP_AJ_G0033334.1 mouse_genomes_project 8 8414612 8430635 + MGP_AJ_P0088183 Carkd protein_coding protein_coding MGP_AJ_T0088184.1 MGP_AJ_G0033334.1 mouse_genomes_project 8 8427551 8430857 + Carkd protein_coding retained_intron MGP_AJ_T0009103.1 MGP_AJ_G0007318.1 mouse_genomes_project 8 32826707 32833136 - Gm16793 lincRNA lincRNA MGP_AJ_T0016032.1 MGP_AJ_G0014127.1 mouse_genomes_project 8 98379327 98380186 + processed_pseudogene processed_pseudogene MGP_AJ_T0100238.1 MGP_AJ_G0038204.1 mouse_genomes_project 8 111704612 111704774 - Gm24291 snRNA snRNA MGP_AJ_T0016008.1 MGP_AJ_G0014103.1 mouse_genomes_project 8 74325356 74326149 - processed_pseudogene processed_pseudogene MGP_AJ_T0089814.1 MGP_AJ_G0033858.1 mouse_genomes_project 8 82402694 82414559 + MGP_AJ_P0089814 Farsa protein_coding protein_coding MGP_AJ_T0089815.1 MGP_AJ_G0033858.1 mouse_genomes_project 8 82402700 82414558 + Farsa protein_coding retained_intron MGP_AJ_T0089816.1 MGP_AJ_G0033858.1 mouse_genomes_project 8 82402714 82412324 + Farsa protein_coding retained_intron MGP_AJ_T0089817.1 MGP_AJ_G0033858.1 mouse_genomes_project 8 82402722 82414559 + MGP_AJ_P0089817 Farsa protein_coding protein_coding MGP_AJ_T0089818.1 MGP_AJ_G0033858.1 mouse_genomes_project 8 82402725 82414558 + MGP_AJ_P0089818 Farsa protein_coding nonsense_mediated_decay MGP_AJ_T0089819.1 MGP_AJ_G0033858.1 mouse_genomes_project 8 82412864 82414312 + Farsa protein_coding retained_intron MGP_AJ_T0009088.1 MGP_AJ_G0007307.1 mouse_genomes_project 8 24363369 24370185 + lincRNA lincRNA MGP_AJ_T0016035.1 MGP_AJ_G0014130.1 mouse_genomes_project 8 114732541 114734985 + processed_pseudogene processed_pseudogene MGP_AJ_T0090426.1 MGP_AJ_G0034065.1 mouse_genomes_project 8 104515372 104561923 + MGP_AJ_P0090426 Cdh3 protein_coding protein_coding MGP_AJ_T0089091.1 MGP_AJ_G0033635.1 mouse_genomes_project 8 63993710 64001752 - MGP_AJ_P0089091 Npy5r protein_coding protein_coding MGP_AJ_T0009143.1 MGP_AJ_G0007354.1 mouse_genomes_project 8 84997674 85001029 + Gm19872 lincRNA lincRNA MGP_AJ_T0009199.1 MGP_AJ_G0007389.1 mouse_genomes_project 8 119721268 119727112 + Gm26747 lincRNA lincRNA MGP_AJ_T0088533.1 MGP_AJ_G0033461.1 mouse_genomes_project 8 22713242 22755661 + MGP_AJ_P0088533 Fgfr1 protein_coding protein_coding MGP_AJ_T0088534.1 MGP_AJ_G0033461.1 mouse_genomes_project 8 22718354 22775790 + MGP_AJ_P0088534 Fgfr1 protein_coding protein_coding MGP_AJ_T0088535.1 MGP_AJ_G0033461.1 mouse_genomes_project 8 22718354 22775790 + MGP_AJ_P0088535 Fgfr1 protein_coding protein_coding MGP_AJ_T0088536.1 MGP_AJ_G0033461.1 mouse_genomes_project 8 22718374 22775790 + MGP_AJ_P0088536 Fgfr1 protein_coding protein_coding MGP_AJ_T0088537.1 MGP_AJ_G0033461.1 mouse_genomes_project 8 22718377 22774856 + MGP_AJ_P0088537 Fgfr1 protein_coding protein_coding MGP_AJ_T0088538.1 MGP_AJ_G0033461.1 mouse_genomes_project 8 22718397 22774345 + MGP_AJ_P0088538 Fgfr1 protein_coding unknown_likely_coding MGP_AJ_T0088539.1 MGP_AJ_G0033461.1 mouse_genomes_project 8 22718477 22755751 + Fgfr1 protein_coding processed_transcript MGP_AJ_T0088540.1 MGP_AJ_G0033461.1 mouse_genomes_project 8 22718901 22774854 + MGP_AJ_P0088540 Fgfr1 protein_coding protein_coding MGP_AJ_T0088541.1 MGP_AJ_G0033461.1 mouse_genomes_project 8 22719421 22755822 + MGP_AJ_P0088541 Fgfr1 protein_coding protein_coding MGP_AJ_T0088542.1 MGP_AJ_G0033461.1 mouse_genomes_project 8 22731809 22774652 + MGP_AJ_P0088542 Fgfr1 protein_coding protein_coding MGP_AJ_T0088543.1 MGP_AJ_G0033461.1 mouse_genomes_project 8 22755709 22770275 + Fgfr1 protein_coding processed_transcript MGP_AJ_T0088544.1 MGP_AJ_G0033461.1 mouse_genomes_project 8 22758166 22763783 + Fgfr1 protein_coding retained_intron MGP_AJ_T0088545.1 MGP_AJ_G0033461.1 mouse_genomes_project 8 22763473 22774860 + Fgfr1 protein_coding retained_intron MGP_AJ_T0088546.1 MGP_AJ_G0033461.1 mouse_genomes_project 8 22766918 22774859 + Fgfr1 protein_coding retained_intron MGP_AJ_T0088547.1 MGP_AJ_G0033461.1 mouse_genomes_project 8 22769554 22772470 + Fgfr1 protein_coding retained_intron MGP_AJ_T0088548.1 MGP_AJ_G0033461.1 mouse_genomes_project 8 22769791 22772532 + Fgfr1 protein_coding retained_intron MGP_AJ_T0016024.1 MGP_AJ_G0014119.1 mouse_genomes_project 8 86766461 86767187 - processed_pseudogene processed_pseudogene MGP_AJ_T0090034.1 MGP_AJ_G0033918.1 mouse_genomes_project 8 90277070 90283695 + MGP_AJ_P0090034 Irx6 protein_coding protein_coding MGP_AJ_T0090035.1 MGP_AJ_G0033918.1 mouse_genomes_project 8 90277564 90283695 + MGP_AJ_P0090035 Irx6 protein_coding protein_coding MGP_AJ_T0090046.1 MGP_AJ_G0033925.1 mouse_genomes_project 8 90705482 90732078 - MGP_AJ_P0090046 Ces1c protein_coding unknown_likely_coding MGP_AJ_T0090047.1 MGP_AJ_G0033925.1 mouse_genomes_project 8 90707545 90732091 - MGP_AJ_P0090047 Ces1c protein_coding protein_coding MGP_AJ_T0090048.1 MGP_AJ_G0033925.1 mouse_genomes_project 8 90714519 90732103 - Ces1c protein_coding retained_intron MGP_AJ_T0090049.1 MGP_AJ_G0033925.1 mouse_genomes_project 8 90717250 90725304 - MGP_AJ_P0090049 Ces1c protein_coding protein_coding MGP_AJ_T0090288.1 MGP_AJ_G0034010.1 mouse_genomes_project 8 103203357 103231211 + MGP_AJ_P0090288 D230025D16Rik protein_coding protein_coding MGP_AJ_T0090289.1 MGP_AJ_G0034010.1 mouse_genomes_project 8 103203418 103229283 + D230025D16Rik protein_coding retained_intron MGP_AJ_T0090290.1 MGP_AJ_G0034010.1 mouse_genomes_project 8 103203418 103230914 + MGP_AJ_P0090290 D230025D16Rik protein_coding nonsense_mediated_decay MGP_AJ_T0090291.1 MGP_AJ_G0034010.1 mouse_genomes_project 8 103203479 103231211 + MGP_AJ_P0090291 D230025D16Rik protein_coding nonsense_mediated_decay MGP_AJ_T0090292.1 MGP_AJ_G0034010.1 mouse_genomes_project 8 103209174 103218239 + MGP_AJ_P0090292 D230025D16Rik protein_coding protein_coding MGP_AJ_T0090293.1 MGP_AJ_G0034010.1 mouse_genomes_project 8 103224650 103229923 + D230025D16Rik protein_coding retained_intron MGP_AJ_T0101483.1 MGP_AJ_G0039449.1 mouse_genomes_project 8 42920565 42920691 - Gm23604 snoRNA snoRNA MGP_AJ_T0088693.1 MGP_AJ_G0033517.1 mouse_genomes_project 8 32621411 32634445 + MGP_AJ_P0088693 Ppp1r3b protein_coding protein_coding MGP_AJ_T0088608.1 MGP_AJ_G0033481.1 mouse_genomes_project 8 24303587 24342261 + MGP_AJ_P0088608 Adgra2 protein_coding protein_coding MGP_AJ_T0088609.1 MGP_AJ_G0033481.1 mouse_genomes_project 8 24303602 24342262 + MGP_AJ_P0088609 Adgra2 protein_coding protein_coding MGP_AJ_T0088610.1 MGP_AJ_G0033481.1 mouse_genomes_project 8 24333001 24337703 + MGP_AJ_P0088610 Adgra2 protein_coding nonsense_mediated_decay MGP_AJ_T0088611.1 MGP_AJ_G0033481.1 mouse_genomes_project 8 24336237 24340449 + MGP_AJ_P0088611 Adgra2 protein_coding protein_coding MGP_AJ_T0100207.1 MGP_AJ_G0038173.1 mouse_genomes_project 8 43607662 43607759 + Gm24669 snRNA snRNA MGP_AJ_T0090776.1 MGP_AJ_G0034183.1 mouse_genomes_project 8 118892369 118953193 - MGP_AJ_P0090776 Gm27021 protein_coding protein_coding MGP_AJ_T0091097.1 MGP_AJ_G0034270.1 mouse_genomes_project 8 124323606 124360571 + MGP_AJ_P0091097 BC021891 protein_coding protein_coding MGP_AJ_T0089162.1 MGP_AJ_G0033658.1 mouse_genomes_project 8 67137128 67151776 - MGP_AJ_P0089162 Zfp866 protein_coding protein_coding MGP_AJ_T0088249.1 MGP_AJ_G0033349.1 mouse_genomes_project 8 9982760 10001326 + MGP_AJ_P0088249 F10 protein_coding protein_coding MGP_AJ_T0088250.1 MGP_AJ_G0033349.1 mouse_genomes_project 8 9982823 10002111 + MGP_AJ_P0088250 F10 protein_coding protein_coding MGP_AJ_T0088251.1 MGP_AJ_G0033349.1 mouse_genomes_project 8 9983025 9991586 + MGP_AJ_P0088251 F10 protein_coding protein_coding MGP_AJ_T0089830.1 MGP_AJ_G0033862.1 mouse_genomes_project 8 82455242 82458152 + MGP_AJ_P0089830 Dnase2a protein_coding protein_coding MGP_AJ_T0089831.1 MGP_AJ_G0033862.1 mouse_genomes_project 8 82455242 82458391 + MGP_AJ_P0089831 Dnase2a protein_coding protein_coding MGP_AJ_T0089832.1 MGP_AJ_G0033862.1 mouse_genomes_project 8 82455329 82455883 + Dnase2a protein_coding retained_intron MGP_AJ_T0089833.1 MGP_AJ_G0033862.1 mouse_genomes_project 8 82455329 82456151 + Dnase2a protein_coding retained_intron MGP_AJ_T0089834.1 MGP_AJ_G0033862.1 mouse_genomes_project 8 82455372 82456608 + MGP_AJ_P0089834 Dnase2a protein_coding protein_coding MGP_AJ_T0089835.1 MGP_AJ_G0033862.1 mouse_genomes_project 8 82455403 82461160 + Dnase2a protein_coding processed_transcript MGP_AJ_T0089836.1 MGP_AJ_G0033862.1 mouse_genomes_project 8 82455413 82456647 + MGP_AJ_P0089836 Dnase2a protein_coding protein_coding MGP_AJ_T0089837.1 MGP_AJ_G0033862.1 mouse_genomes_project 8 82456517 82458144 + Dnase2a protein_coding processed_transcript MGP_AJ_T0089841.1 MGP_AJ_G0033862.1 mouse_genomes_project 8 82460073 82469555 + Dnase2a protein_coding processed_transcript MGP_AJ_T0009136.1 MGP_AJ_G0007348.1 mouse_genomes_project 8 84627004 84634692 + Gm5118 lincRNA lincRNA MGP_AJ_T0015965.1 MGP_AJ_G0014060.1 mouse_genomes_project 8 11112470 11113070 + processed_pseudogene processed_pseudogene MGP_AJ_T0011022.1 MGP_AJ_G0009144.1 mouse_genomes_project 8 120295944 120296007 + Mir7237 miRNA miRNA MGP_AJ_T0088349.1 MGP_AJ_G0033382.1 mouse_genomes_project 8 12053717 12127919 + MGP_AJ_P0088349 Myom2 protein_coding protein_coding MGP_AJ_T0088350.1 MGP_AJ_G0033382.1 mouse_genomes_project 8 12054872 12060118 + Myom2 protein_coding processed_transcript MGP_AJ_T0088351.1 MGP_AJ_G0033382.1 mouse_genomes_project 8 12056087 12070070 + Myom2 protein_coding retained_intron MGP_AJ_T0088352.1 MGP_AJ_G0033382.1 mouse_genomes_project 8 12100659 12103475 + Myom2 protein_coding retained_intron MGP_AJ_T0088353.1 MGP_AJ_G0033382.1 mouse_genomes_project 8 12113419 12125539 + Myom2 protein_coding processed_transcript MGP_AJ_T0090341.1 MGP_AJ_G0034028.1 mouse_genomes_project 8 103452619 103464559 - MGP_AJ_P0090341 Zdhhc1 protein_coding protein_coding MGP_AJ_T0010986.1 MGP_AJ_G0009108.1 mouse_genomes_project 8 81753239 81753322 - Mir3074-2 miRNA miRNA MGP_AJ_T0088248.1 MGP_AJ_G0033348.1 mouse_genomes_project 8 9971472 9981248 + MGP_AJ_P0088248 F7 protein_coding protein_coding MGP_AJ_T0089507.1 MGP_AJ_G0033756.1 mouse_genomes_project 8 69712379 69735093 + MGP_AJ_P0089507 Rab8a protein_coding protein_coding MGP_AJ_T0089508.1 MGP_AJ_G0033756.1 mouse_genomes_project 8 69712492 69727052 + Rab8a protein_coding processed_transcript MGP_AJ_T0089509.1 MGP_AJ_G0033756.1 mouse_genomes_project 8 69712538 69727246 + Rab8a protein_coding retained_intron MGP_AJ_T0088634.1 MGP_AJ_G0033495.1 mouse_genomes_project 8 28386483 28396189 - MGP_AJ_P0088634 Mak16 protein_coding protein_coding MGP_AJ_T0009194.1 MGP_AJ_G0007386.1 mouse_genomes_project 8 119352657 119380689 - Fendrr lincRNA lincRNA MGP_AJ_T0009195.1 MGP_AJ_G0007386.1 mouse_genomes_project 8 119356578 119358189 - Fendrr lincRNA lincRNA MGP_AJ_T0009196.1 MGP_AJ_G0007386.1 mouse_genomes_project 8 119356894 119380767 - Fendrr lincRNA lincRNA MGP_AJ_T0090727.1 MGP_AJ_G0034171.1 mouse_genomes_project 8 117974622 118033021 + MGP_AJ_P0090727 Atp2c2 protein_coding protein_coding MGP_AJ_T0090728.1 MGP_AJ_G0034171.1 mouse_genomes_project 8 117974778 118032789 + MGP_AJ_P0090728 Atp2c2 protein_coding unknown_likely_coding MGP_AJ_T0011023.1 MGP_AJ_G0009145.1 mouse_genomes_project 8 120951962 120952073 - Mir6396 miRNA miRNA MGP_AJ_T0090679.1 MGP_AJ_G0034151.1 mouse_genomes_project 8 115335408 115375185 + MGP_AJ_P0090679 Bco1 protein_coding protein_coding MGP_AJ_T0090680.1 MGP_AJ_G0034151.1 mouse_genomes_project 8 115335419 115372057 + MGP_AJ_P0090680 Bco1 protein_coding protein_coding MGP_AJ_T0090681.1 MGP_AJ_G0034151.1 mouse_genomes_project 8 115335552 115374155 + MGP_AJ_P0090681 Bco1 protein_coding protein_coding MGP_AJ_T0090594.1 MGP_AJ_G0034121.1 mouse_genomes_project 8 109676995 109769523 + MGP_AJ_P0090594 Znrf1 protein_coding protein_coding MGP_AJ_T0090595.1 MGP_AJ_G0034121.1 mouse_genomes_project 8 109676995 109769213 + MGP_AJ_P0090595 Znrf1 protein_coding protein_coding MGP_AJ_T0090596.1 MGP_AJ_G0034121.1 mouse_genomes_project 8 109676995 109769523 + MGP_AJ_P0090596 Znrf1 protein_coding protein_coding MGP_AJ_T0090597.1 MGP_AJ_G0034121.1 mouse_genomes_project 8 109677188 109767271 + MGP_AJ_P0090597 Znrf1 protein_coding protein_coding MGP_AJ_T0090598.1 MGP_AJ_G0034121.1 mouse_genomes_project 8 109677466 109766466 + MGP_AJ_P0090598 Znrf1 protein_coding protein_coding MGP_AJ_T0090599.1 MGP_AJ_G0034121.1 mouse_genomes_project 8 109677616 109765943 + MGP_AJ_P0090599 Znrf1 protein_coding protein_coding MGP_AJ_T0090600.1 MGP_AJ_G0034121.1 mouse_genomes_project 8 109677809 109765429 + MGP_AJ_P0090600 Znrf1 protein_coding protein_coding MGP_AJ_T0090601.1 MGP_AJ_G0034121.1 mouse_genomes_project 8 109677833 109765994 + MGP_AJ_P0090601 Znrf1 protein_coding nonsense_mediated_decay MGP_AJ_T0090602.1 MGP_AJ_G0034121.1 mouse_genomes_project 8 109678760 109766064 + MGP_AJ_P0090602 Znrf1 protein_coding protein_coding MGP_AJ_T0090603.1 MGP_AJ_G0034121.1 mouse_genomes_project 8 109678760 109769523 + MGP_AJ_P0090603 Znrf1 protein_coding protein_coding MGP_AJ_T0090604.1 MGP_AJ_G0034121.1 mouse_genomes_project 8 109678882 109752657 + Znrf1 protein_coding processed_transcript MGP_AJ_T0090605.1 MGP_AJ_G0034121.1 mouse_genomes_project 8 109681728 109765157 + MGP_AJ_P0090605 Znrf1 protein_coding protein_coding MGP_AJ_T0090606.1 MGP_AJ_G0034121.1 mouse_genomes_project 8 109703160 109749981 + Znrf1 protein_coding processed_transcript MGP_AJ_T0090607.1 MGP_AJ_G0034121.1 mouse_genomes_project 8 109749932 109766455 + MGP_AJ_P0090607 Znrf1 protein_coding nonsense_mediated_decay MGP_AJ_T0090608.1 MGP_AJ_G0034121.1 mouse_genomes_project 8 109752588 109765268 + MGP_AJ_P0090608 Znrf1 protein_coding protein_coding MGP_AJ_T0089505.1 MGP_AJ_G0033755.1 mouse_genomes_project 8 69685167 69694874 + Tpm4 protein_coding processed_transcript MGP_AJ_T0089506.1 MGP_AJ_G0033755.1 mouse_genomes_project 8 69685451 69703307 + MGP_AJ_P0089506 Tpm4 protein_coding protein_coding MGP_AJ_T0090920.1 MGP_AJ_G0034217.1 mouse_genomes_project 8 121107772 121154692 + MGP_AJ_P0090920 Acsf3 protein_coding protein_coding MGP_AJ_T0090563.1 MGP_AJ_G0034113.1 mouse_genomes_project 8 109146429 109150236 + MGP_AJ_P0090563 Aars protein_coding protein_coding MGP_AJ_T0090564.1 MGP_AJ_G0034113.1 mouse_genomes_project 8 109147164 109158599 + Aars protein_coding retained_intron MGP_AJ_T0090565.1 MGP_AJ_G0034113.1 mouse_genomes_project 8 109147187 109171282 + MGP_AJ_P0090565 Aars protein_coding protein_coding MGP_AJ_T0090566.1 MGP_AJ_G0034113.1 mouse_genomes_project 8 109147201 109160218 + Aars protein_coding retained_intron MGP_AJ_T0090567.1 MGP_AJ_G0034113.1 mouse_genomes_project 8 109155163 109156247 + Aars protein_coding retained_intron MGP_AJ_T0090568.1 MGP_AJ_G0034113.1 mouse_genomes_project 8 109156516 109158597 + Aars protein_coding retained_intron MGP_AJ_T0090569.1 MGP_AJ_G0034113.1 mouse_genomes_project 8 109161386 109163511 + Aars protein_coding retained_intron MGP_AJ_T0091020.1 MGP_AJ_G0034244.1 mouse_genomes_project 8 122275649 122278605 - MGP_AJ_P0091020 Acta1 protein_coding protein_coding MGP_AJ_T0088708.1 MGP_AJ_G0033525.1 mouse_genomes_project 8 33863404 34030968 - MGP_AJ_P0088708 Dlc1 protein_coding protein_coding MGP_AJ_T0088709.1 MGP_AJ_G0033525.1 mouse_genomes_project 8 33863404 33909410 - MGP_AJ_P0088709 Dlc1 protein_coding protein_coding MGP_AJ_T0088710.1 MGP_AJ_G0033525.1 mouse_genomes_project 8 33865902 34248044 - MGP_AJ_P0088710 Dlc1 protein_coding protein_coding MGP_AJ_T0088711.1 MGP_AJ_G0033525.1 mouse_genomes_project 8 33867859 33872831 - Dlc1 protein_coding retained_intron MGP_AJ_T0088712.1 MGP_AJ_G0033525.1 mouse_genomes_project 8 33888587 33909341 - Dlc1 protein_coding retained_intron MGP_AJ_T0088713.1 MGP_AJ_G0033525.1 mouse_genomes_project 8 34142801 34247959 - Dlc1 protein_coding retained_intron MGP_AJ_T0088714.1 MGP_AJ_G0033525.1 mouse_genomes_project 8 34152586 34248024 - Dlc1 protein_coding retained_intron MGP_AJ_T0088715.1 MGP_AJ_G0033525.1 mouse_genomes_project 8 34231230 34248038 - Dlc1 protein_coding retained_intron MGP_AJ_T0088716.1 MGP_AJ_G0033525.1 mouse_genomes_project 8 34234201 34248744 - MGP_AJ_P0088716 Dlc1 protein_coding protein_coding MGP_AJ_T0100232.1 MGP_AJ_G0038198.1 mouse_genomes_project 8 103149940 103150044 + Gm22063 snRNA snRNA MGP_AJ_T0010968.1 MGP_AJ_G0009090.1 mouse_genomes_project 8 67489122 67489185 - Mir7066 miRNA miRNA MGP_AJ_T0090383.1 MGP_AJ_G0034050.1 mouse_genomes_project 8 103937584 103941460 - MGP_AJ_P0090383 Lcat protein_coding protein_coding MGP_AJ_T0088252.1 MGP_AJ_G0033350.1 mouse_genomes_project 8 10006337 10018672 + MGP_AJ_P0088252 Proz protein_coding protein_coding MGP_AJ_T0089360.1 MGP_AJ_G0033716.1 mouse_genomes_project 8 68288690 68298557 - MGP_AJ_P0089360 Slc5a5 protein_coding protein_coding MGP_AJ_T0088156.1 MGP_AJ_G0033319.1 mouse_genomes_project 8 1654620 1712971 - MGP_AJ_P0088156 Shcbp1 protein_coding protein_coding MGP_AJ_T0090844.1 MGP_AJ_G0034197.1 mouse_genomes_project 8 120196426 120224075 - MGP_AJ_P0090844 Slc7a5 protein_coding protein_coding MGP_AJ_T0090845.1 MGP_AJ_G0034197.1 mouse_genomes_project 8 120198066 120199179 - Slc7a5 protein_coding retained_intron MGP_AJ_T0090846.1 MGP_AJ_G0034197.1 mouse_genomes_project 8 120203670 120211797 - Slc7a5 protein_coding processed_transcript MGP_AJ_T0101517.1 MGP_AJ_G0039483.1 mouse_genomes_project 8 108931898 108931987 - Snord111 snoRNA snoRNA MGP_AJ_T0089651.1 MGP_AJ_G0033812.1 mouse_genomes_project 8 80819473 80841631 - MGP_AJ_P0089651 Elmod2 protein_coding protein_coding MGP_AJ_T0089652.1 MGP_AJ_G0033812.1 mouse_genomes_project 8 80819863 80841631 - MGP_AJ_P0089652 Elmod2 protein_coding protein_coding MGP_AJ_T0089653.1 MGP_AJ_G0033812.1 mouse_genomes_project 8 80823506 80833390 - Elmod2 protein_coding retained_intron MGP_AJ_T0089654.1 MGP_AJ_G0033812.1 mouse_genomes_project 8 80825790 80840594 - Elmod2 protein_coding retained_intron MGP_AJ_T0089655.1 MGP_AJ_G0033812.1 mouse_genomes_project 8 80832983 80841549 - Elmod2 protein_coding retained_intron MGP_AJ_T0089656.1 MGP_AJ_G0033812.1 mouse_genomes_project 8 80837473 80841549 - Elmod2 protein_coding retained_intron MGP_AJ_T0090617.1 MGP_AJ_G0034127.1 mouse_genomes_project 8 110011064 110022874 - MGP_AJ_P0090617 Tmem170 protein_coding protein_coding MGP_AJ_T0089594.1 MGP_AJ_G0033790.1 mouse_genomes_project 8 76272346 76288703 - MGP_AJ_P0089594 Lsm6 protein_coding protein_coding MGP_AJ_T0089595.1 MGP_AJ_G0033790.1 mouse_genomes_project 8 76273932 76288703 - MGP_AJ_P0089595 Lsm6 protein_coding protein_coding MGP_AJ_T0089596.1 MGP_AJ_G0033790.1 mouse_genomes_project 8 76275518 76277692 - Lsm6 protein_coding retained_intron MGP_AJ_T0089597.1 MGP_AJ_G0033790.1 mouse_genomes_project 8 76275539 76280696 - Lsm6 protein_coding retained_intron MGP_AJ_T0090714.1 MGP_AJ_G0034164.1 mouse_genomes_project 8 117782312 117832895 - MGP_AJ_P0090714 Mbtps1 protein_coding protein_coding MGP_AJ_T0090715.1 MGP_AJ_G0034164.1 mouse_genomes_project 8 117782312 117832895 - MGP_AJ_P0090715 Mbtps1 protein_coding protein_coding MGP_AJ_T0090423.1 MGP_AJ_G0034062.1 mouse_genomes_project 8 104263050 104351130 - MGP_AJ_P0090423 Smpd3 protein_coding protein_coding MGP_AJ_T0005405.1 MGP_AJ_G0004581.1 mouse_genomes_project 8 123604094 123607011 - Gm16237 antisense antisense MGP_AJ_T0089215.1 MGP_AJ_G0033677.1 mouse_genomes_project 8 67560166 67570045 + Tmem161a protein_coding processed_transcript MGP_AJ_T0089216.1 MGP_AJ_G0033677.1 mouse_genomes_project 8 67560215 67572782 + MGP_AJ_P0089216 Tmem161a protein_coding nonsense_mediated_decay MGP_AJ_T0089217.1 MGP_AJ_G0033677.1 mouse_genomes_project 8 67560223 67571990 + MGP_AJ_P0089217 Tmem161a protein_coding nonsense_mediated_decay MGP_AJ_T0089218.1 MGP_AJ_G0033677.1 mouse_genomes_project 8 67560226 67566295 + Tmem161a protein_coding retained_intron MGP_AJ_T0089219.1 MGP_AJ_G0033677.1 mouse_genomes_project 8 67560226 67566568 + Tmem161a protein_coding processed_transcript MGP_AJ_T0089220.1 MGP_AJ_G0033677.1 mouse_genomes_project 8 67560229 67569853 + MGP_AJ_P0089220 Tmem161a protein_coding protein_coding MGP_AJ_T0089221.1 MGP_AJ_G0033677.1 mouse_genomes_project 8 67560248 67571254 + MGP_AJ_P0089221 Tmem161a protein_coding protein_coding MGP_AJ_T0089222.1 MGP_AJ_G0033677.1 mouse_genomes_project 8 67562283 67571982 + MGP_AJ_P0089222 Tmem161a protein_coding protein_coding MGP_AJ_T0089223.1 MGP_AJ_G0033677.1 mouse_genomes_project 8 67565984 67566701 + Tmem161a protein_coding retained_intron MGP_AJ_T0089224.1 MGP_AJ_G0033677.1 mouse_genomes_project 8 67566379 67568040 + Tmem161a protein_coding processed_transcript MGP_AJ_T0089225.1 MGP_AJ_G0033677.1 mouse_genomes_project 8 67566629 67570327 + MGP_AJ_P0089225 Tmem161a protein_coding nonsense_mediated_decay MGP_AJ_T0089226.1 MGP_AJ_G0033677.1 mouse_genomes_project 8 67567882 67570428 + Tmem161a protein_coding retained_intron MGP_AJ_T0089227.1 MGP_AJ_G0033677.1 mouse_genomes_project 8 67569653 67571147 + Tmem161a protein_coding retained_intron MGP_AJ_T0091070.1 MGP_AJ_G0034263.1 mouse_genomes_project 8 123287350 123328865 - MGP_AJ_P0091070 Egln1 protein_coding protein_coding MGP_AJ_T0088587.1 MGP_AJ_G0033475.1 mouse_genomes_project 8 23225222 23326151 - MGP_AJ_P0088587 Hook3 protein_coding protein_coding MGP_AJ_T0088588.1 MGP_AJ_G0033475.1 mouse_genomes_project 8 23241890 23277653 - MGP_AJ_P0088588 Hook3 protein_coding protein_coding MGP_AJ_T0088589.1 MGP_AJ_G0033475.1 mouse_genomes_project 8 23241899 23248188 - Hook3 protein_coding retained_intron MGP_AJ_T0088703.1 MGP_AJ_G0033524.1 mouse_genomes_project 8 33750474 33805888 + MGP_AJ_P0088703 6430573F11Rik protein_coding protein_coding MGP_AJ_T0088704.1 MGP_AJ_G0033524.1 mouse_genomes_project 8 33750500 33807249 + MGP_AJ_P0088704 6430573F11Rik protein_coding protein_coding MGP_AJ_T0088705.1 MGP_AJ_G0033524.1 mouse_genomes_project 8 33751108 33804523 + MGP_AJ_P0088705 6430573F11Rik protein_coding nonsense_mediated_decay MGP_AJ_T0088706.1 MGP_AJ_G0033524.1 mouse_genomes_project 8 33781862 33805941 + MGP_AJ_P0088706 6430573F11Rik protein_coding protein_coding MGP_AJ_T0088707.1 MGP_AJ_G0033524.1 mouse_genomes_project 8 33798585 33805525 + 6430573F11Rik protein_coding processed_transcript MGP_AJ_T0089070.1 MGP_AJ_G0033630.1 mouse_genomes_project 8 62297674 62303388 - MGP_AJ_P0089070 protein_coding protein_coding MGP_AJ_T0089071.1 MGP_AJ_G0033630.1 mouse_genomes_project 8 62299554 62320913 - protein_coding processed_transcript MGP_AJ_T0089072.1 MGP_AJ_G0033630.1 mouse_genomes_project 8 62311553 62320989 - MGP_AJ_P0089072 protein_coding protein_coding MGP_AJ_T0089073.1 MGP_AJ_G0033630.1 mouse_genomes_project 8 62311553 62321153 - MGP_AJ_P0089073 protein_coding protein_coding MGP_AJ_T0090500.1 MGP_AJ_G0034090.1 mouse_genomes_project 8 107716489 107738479 - MGP_AJ_P0090500 Ist1 protein_coding protein_coding MGP_AJ_T0088638.1 MGP_AJ_G0033497.1 mouse_genomes_project 8 28984724 28987427 - MGP_AJ_P0088638 protein_coding protein_coding MGP_AJ_T0011019.1 MGP_AJ_G0009141.1 mouse_genomes_project 8 118724154 118724245 - Gm22715 miRNA miRNA MGP_AJ_T0088053.1 MGP_AJ_G0033294.1 mouse_genomes_project 8 539740 541901 - Pcp2 protein_coding retained_intron MGP_AJ_T0088054.1 MGP_AJ_G0033294.1 mouse_genomes_project 8 539740 541901 - MGP_AJ_P0088054 Pcp2 protein_coding protein_coding MGP_AJ_T0088055.1 MGP_AJ_G0033294.1 mouse_genomes_project 8 539746 541901 - Pcp2 protein_coding retained_intron MGP_AJ_T0088056.1 MGP_AJ_G0033294.1 mouse_genomes_project 8 539746 541358 - MGP_AJ_P0088056 Pcp2 protein_coding protein_coding MGP_AJ_T0088057.1 MGP_AJ_G0033294.1 mouse_genomes_project 8 539746 541638 - MGP_AJ_P0088057 Pcp2 protein_coding protein_coding MGP_AJ_T0088058.1 MGP_AJ_G0033294.1 mouse_genomes_project 8 539746 541405 - MGP_AJ_P0088058 Pcp2 protein_coding protein_coding MGP_AJ_T0088059.1 MGP_AJ_G0033294.1 mouse_genomes_project 8 539749 541881 - Pcp2 protein_coding processed_transcript MGP_AJ_T0010961.1 MGP_AJ_G0009083.1 mouse_genomes_project 8 37621385 37621440 - Mir7666 miRNA miRNA MGP_AJ_T0088853.1 MGP_AJ_G0033565.1 mouse_genomes_project 8 43339918 43365236 + MGP_AJ_P0088853 Lrp2bp protein_coding protein_coding MGP_AJ_T0088854.1 MGP_AJ_G0033565.1 mouse_genomes_project 8 43339923 43364967 + MGP_AJ_P0088854 Lrp2bp protein_coding protein_coding MGP_AJ_T0088855.1 MGP_AJ_G0033565.1 mouse_genomes_project 8 43351464 43367058 + MGP_AJ_P0088855 Lrp2bp protein_coding protein_coding MGP_AJ_T0088856.1 MGP_AJ_G0033565.1 mouse_genomes_project 8 43351473 43365224 + MGP_AJ_P0088856 Lrp2bp protein_coding nonsense_mediated_decay MGP_AJ_T0088857.1 MGP_AJ_G0033565.1 mouse_genomes_project 8 43352612 43358390 + Lrp2bp protein_coding processed_transcript MGP_AJ_T0088858.1 MGP_AJ_G0033565.1 mouse_genomes_project 8 43360148 43367029 + Lrp2bp protein_coding processed_transcript MGP_AJ_T0090551.1 MGP_AJ_G0034109.1 mouse_genomes_project 8 108985468 109006246 - MGP_AJ_P0090551 Fuk protein_coding protein_coding MGP_AJ_T0090815.1 MGP_AJ_G0034190.1 mouse_genomes_project 8 119425432 119428137 + MGP_AJ_P0090815 Foxl1 protein_coding protein_coding MGP_AJ_T0100211.1 MGP_AJ_G0038177.1 mouse_genomes_project 8 50886862 50886924 + Gm22841 snRNA snRNA MGP_AJ_T0098484.1 MGP_AJ_G0036468.1 mouse_genomes_project 8 116062925 116064098 + pseudogene pseudogene MGP_AJ_T0089329.1 MGP_AJ_G0033700.1 mouse_genomes_project 8 68046306 68059813 - MGP_AJ_P0089329 Pgpep1 protein_coding protein_coding MGP_AJ_T0090516.1 MGP_AJ_G0034097.1 mouse_genomes_project 8 108089900 108101920 - MGP_AJ_P0090516 Chst4 protein_coding protein_coding MGP_AJ_T0089650.1 MGP_AJ_G0033811.1 mouse_genomes_project 8 80794853 80802920 + MGP_AJ_P0089650 Ucp1 protein_coding protein_coding MGP_AJ_T0090334.1 MGP_AJ_G0034026.1 mouse_genomes_project 8 103392292 103422867 + Lrrc36 protein_coding processed_transcript MGP_AJ_T0090335.1 MGP_AJ_G0034026.1 mouse_genomes_project 8 103392343 103405625 + Lrrc36 protein_coding processed_transcript MGP_AJ_T0090336.1 MGP_AJ_G0034026.1 mouse_genomes_project 8 103392343 103444225 + MGP_AJ_P0090336 Lrrc36 protein_coding protein_coding MGP_AJ_T0090337.1 MGP_AJ_G0034026.1 mouse_genomes_project 8 103406361 103444223 + MGP_AJ_P0090337 Lrrc36 protein_coding protein_coding MGP_AJ_T0090701.1 MGP_AJ_G0034161.1 mouse_genomes_project 8 117704661 117713623 + MGP_AJ_P0090701 Osgin1 protein_coding protein_coding MGP_AJ_T0090702.1 MGP_AJ_G0034161.1 mouse_genomes_project 8 117707659 117713562 + Osgin1 protein_coding processed_transcript MGP_AJ_T0090703.1 MGP_AJ_G0034161.1 mouse_genomes_project 8 117707684 117716807 + MGP_AJ_P0090703 Osgin1 protein_coding protein_coding MGP_AJ_T0090704.1 MGP_AJ_G0034161.1 mouse_genomes_project 8 117707704 117716801 + Osgin1 protein_coding retained_intron MGP_AJ_T0090705.1 MGP_AJ_G0034161.1 mouse_genomes_project 8 117707726 117715602 + Osgin1 protein_coding retained_intron MGP_AJ_T0090414.1 MGP_AJ_G0034059.1 mouse_genomes_project 8 104177819 104208433 + MGP_AJ_P0090414 Slc7a6 protein_coding protein_coding MGP_AJ_T0090518.1 MGP_AJ_G0034099.1 mouse_genomes_project 8 108146078 108168236 - MGP_AJ_P0090518 Gm17720 protein_coding protein_coding MGP_AJ_T0018465.1 MGP_AJ_G0015693.1 mouse_genomes_project 8 54621994 54638239 - AV026068 processed_transcript retained_intron MGP_AJ_T0018466.1 MGP_AJ_G0015693.1 mouse_genomes_project 8 54621994 54638581 - AV026068 processed_transcript lincRNA MGP_AJ_T0018467.1 MGP_AJ_G0015693.1 mouse_genomes_project 8 54621994 54638704 - AV026068 processed_transcript lincRNA MGP_AJ_T0018468.1 MGP_AJ_G0015693.1 mouse_genomes_project 8 54621994 54638163 - AV026068 processed_transcript lincRNA MGP_AJ_T0018469.1 MGP_AJ_G0015693.1 mouse_genomes_project 8 54622000 54623086 - AV026068 processed_transcript lincRNA MGP_AJ_T0018470.1 MGP_AJ_G0015693.1 mouse_genomes_project 8 54622970 54638675 - AV026068 processed_transcript retained_intron MGP_AJ_T0018471.1 MGP_AJ_G0015693.1 mouse_genomes_project 8 54624669 54638613 - AV026068 processed_transcript retained_intron MGP_AJ_T0018472.1 MGP_AJ_G0015693.1 mouse_genomes_project 8 54632128 54638594 - AV026068 processed_transcript retained_intron MGP_AJ_T0009161.1 MGP_AJ_G0007364.1 mouse_genomes_project 8 89928733 89949871 - Crnde lincRNA lincRNA MGP_AJ_T0009162.1 MGP_AJ_G0007364.1 mouse_genomes_project 8 89928733 89958832 - Crnde lincRNA lincRNA MGP_AJ_T0009163.1 MGP_AJ_G0007364.1 mouse_genomes_project 8 89928733 89959121 - Crnde lincRNA lincRNA MGP_AJ_T0009164.1 MGP_AJ_G0007364.1 mouse_genomes_project 8 89928945 89958892 - Crnde lincRNA lincRNA MGP_AJ_T0009165.1 MGP_AJ_G0007364.1 mouse_genomes_project 8 89938883 89958765 - Crnde lincRNA lincRNA MGP_AJ_T0009167.1 MGP_AJ_G0007364.1 mouse_genomes_project 8 89947920 89949871 - Crnde lincRNA lincRNA MGP_AJ_T0009168.1 MGP_AJ_G0007364.1 mouse_genomes_project 8 89949932 89958870 - Crnde lincRNA lincRNA MGP_AJ_T0089409.1 MGP_AJ_G0033729.1 mouse_genomes_project 8 68936074 68936901 + MGP_AJ_P0089409 Mrpl34 protein_coding protein_coding MGP_AJ_T0089330.1 MGP_AJ_G0033701.1 mouse_genomes_project 8 68075471 68081073 + MGP_AJ_P0089330 Lsm4 protein_coding protein_coding MGP_AJ_T0089331.1 MGP_AJ_G0033701.1 mouse_genomes_project 8 68075772 68080369 + MGP_AJ_P0089331 Lsm4 protein_coding protein_coding MGP_AJ_T0089332.1 MGP_AJ_G0033701.1 mouse_genomes_project 8 68079985 68080437 + Lsm4 protein_coding retained_intron MGP_AJ_T0100202.1 MGP_AJ_G0038168.1 mouse_genomes_project 8 29443381 29443501 + Gm22140 snRNA snRNA MGP_AJ_T0009094.1 MGP_AJ_G0007312.1 mouse_genomes_project 8 30135613 30204708 - Gm3985 lincRNA lincRNA MGP_AJ_T0009095.1 MGP_AJ_G0007312.1 mouse_genomes_project 8 30137588 30196973 - Gm3985 lincRNA lincRNA MGP_AJ_T0089799.1 MGP_AJ_G0033852.1 mouse_genomes_project 8 82265110 82268950 + MGP_AJ_P0089799 G430095P16Rik protein_coding protein_coding MGP_AJ_T0011015.1 MGP_AJ_G0009137.1 mouse_genomes_project 8 109833372 109833446 - Mir7076 miRNA miRNA MGP_AJ_T0088952.1 MGP_AJ_G0033596.1 mouse_genomes_project 8 52007933 52096295 - MGP_AJ_P0088952 Wdr17 protein_coding protein_coding MGP_AJ_T0088953.1 MGP_AJ_G0033596.1 mouse_genomes_project 8 52008111 52102004 - MGP_AJ_P0088953 Wdr17 protein_coding protein_coding MGP_AJ_T0088954.1 MGP_AJ_G0033596.1 mouse_genomes_project 8 52008491 52027744 - Wdr17 protein_coding retained_intron MGP_AJ_T0088955.1 MGP_AJ_G0033596.1 mouse_genomes_project 8 52008669 52101963 - MGP_AJ_P0088955 Wdr17 protein_coding protein_coding MGP_AJ_T0088956.1 MGP_AJ_G0033596.1 mouse_genomes_project 8 52028350 52034973 - Wdr17 protein_coding retained_intron MGP_AJ_T0088957.1 MGP_AJ_G0033596.1 mouse_genomes_project 8 52046335 52071253 - MGP_AJ_P0088957 Wdr17 protein_coding protein_coding MGP_AJ_T0088958.1 MGP_AJ_G0033596.1 mouse_genomes_project 8 52046379 52101966 - Wdr17 protein_coding processed_transcript MGP_AJ_T0088959.1 MGP_AJ_G0033596.1 mouse_genomes_project 8 52068543 52101964 - MGP_AJ_P0088959 Wdr17 protein_coding protein_coding MGP_AJ_T0088960.1 MGP_AJ_G0033596.1 mouse_genomes_project 8 52068875 52102090 - Wdr17 protein_coding processed_transcript MGP_AJ_T0088961.1 MGP_AJ_G0033596.1 mouse_genomes_project 8 52074424 52251529 - MGP_AJ_P0088961 Wdr17 protein_coding protein_coding MGP_AJ_T0088962.1 MGP_AJ_G0033596.1 mouse_genomes_project 8 52077464 52087840 - MGP_AJ_P0088962 Wdr17 protein_coding protein_coding MGP_AJ_T0089297.1 MGP_AJ_G0033692.1 mouse_genomes_project 8 67905537 67908113 - protein_coding retained_intron MGP_AJ_T0089299.1 MGP_AJ_G0033692.1 mouse_genomes_project 8 67905914 67908315 - MGP_AJ_P0089299 protein_coding protein_coding MGP_AJ_T0089300.1 MGP_AJ_G0033692.1 mouse_genomes_project 8 67905917 67908151 - MGP_AJ_P0089300 protein_coding protein_coding MGP_AJ_T0089301.1 MGP_AJ_G0033692.1 mouse_genomes_project 8 67905944 67907679 - MGP_AJ_P0089301 protein_coding protein_coding MGP_AJ_T0089302.1 MGP_AJ_G0033692.1 mouse_genomes_project 8 67905944 67908089 - MGP_AJ_P0089302 protein_coding protein_coding MGP_AJ_T0089303.1 MGP_AJ_G0033692.1 mouse_genomes_project 8 67905944 67908084 - MGP_AJ_P0089303 protein_coding protein_coding MGP_AJ_T0090480.1 MGP_AJ_G0034082.1 mouse_genomes_project 8 105469097 105593614 + MGP_AJ_P0090480 Wwp2 protein_coding protein_coding MGP_AJ_T0091105.1 MGP_AJ_G0034278.1 mouse_genomes_project 8 125513939 126061681 + MGP_AJ_P0091105 Pard3 protein_coding protein_coding MGP_AJ_T0091106.1 MGP_AJ_G0034278.1 mouse_genomes_project 8 125514102 126061996 + MGP_AJ_P0091106 Pard3 protein_coding protein_coding MGP_AJ_T0091107.1 MGP_AJ_G0034278.1 mouse_genomes_project 8 125514116 125853215 + MGP_AJ_P0091107 Pard3 protein_coding protein_coding MGP_AJ_T0091108.1 MGP_AJ_G0034278.1 mouse_genomes_project 8 125514144 125862826 + Pard3 protein_coding retained_intron MGP_AJ_T0091109.1 MGP_AJ_G0034278.1 mouse_genomes_project 8 125514291 126061681 + MGP_AJ_P0091109 Pard3 protein_coding protein_coding MGP_AJ_T0091110.1 MGP_AJ_G0034278.1 mouse_genomes_project 8 125514305 125728218 + MGP_AJ_P0091110 Pard3 protein_coding nonsense_mediated_decay MGP_AJ_T0091111.1 MGP_AJ_G0034278.1 mouse_genomes_project 8 125514305 125821185 + MGP_AJ_P0091111 Pard3 protein_coding nonsense_mediated_decay MGP_AJ_T0091112.1 MGP_AJ_G0034278.1 mouse_genomes_project 8 125514341 126060518 + MGP_AJ_P0091112 Pard3 protein_coding protein_coding MGP_AJ_T0091113.1 MGP_AJ_G0034278.1 mouse_genomes_project 8 125514341 126060518 + MGP_AJ_P0091113 Pard3 protein_coding protein_coding MGP_AJ_T0091114.1 MGP_AJ_G0034278.1 mouse_genomes_project 8 125514391 125877384 + MGP_AJ_P0091114 Pard3 protein_coding protein_coding MGP_AJ_T0091115.1 MGP_AJ_G0034278.1 mouse_genomes_project 8 125514391 126061681 + MGP_AJ_P0091115 Pard3 protein_coding protein_coding MGP_AJ_T0091116.1 MGP_AJ_G0034278.1 mouse_genomes_project 8 125514391 125877384 + MGP_AJ_P0091116 Pard3 protein_coding protein_coding MGP_AJ_T0091117.1 MGP_AJ_G0034278.1 mouse_genomes_project 8 125514391 125877384 + MGP_AJ_P0091117 Pard3 protein_coding protein_coding MGP_AJ_T0091118.1 MGP_AJ_G0034278.1 mouse_genomes_project 8 125514391 125924843 + MGP_AJ_P0091118 Pard3 protein_coding protein_coding MGP_AJ_T0091119.1 MGP_AJ_G0034278.1 mouse_genomes_project 8 125514393 125877315 + MGP_AJ_P0091119 Pard3 protein_coding protein_coding MGP_AJ_T0091120.1 MGP_AJ_G0034278.1 mouse_genomes_project 8 125514400 125883852 + MGP_AJ_P0091120 Pard3 protein_coding protein_coding MGP_AJ_T0091121.1 MGP_AJ_G0034278.1 mouse_genomes_project 8 125523238 125877315 + MGP_AJ_P0091121 Pard3 protein_coding protein_coding MGP_AJ_T0091122.1 MGP_AJ_G0034278.1 mouse_genomes_project 8 125750689 125853215 + MGP_AJ_P0091122 Pard3 protein_coding protein_coding MGP_AJ_T0091123.1 MGP_AJ_G0034278.1 mouse_genomes_project 8 125757415 125852695 + MGP_AJ_P0091123 Pard3 protein_coding protein_coding MGP_AJ_T0091124.1 MGP_AJ_G0034278.1 mouse_genomes_project 8 125807365 125812742 + Pard3 protein_coding retained_intron MGP_AJ_T0091125.1 MGP_AJ_G0034278.1 mouse_genomes_project 8 125808261 125849271 + MGP_AJ_P0091125 Pard3 protein_coding protein_coding MGP_AJ_T0091126.1 MGP_AJ_G0034278.1 mouse_genomes_project 8 125822302 125827781 + Pard3 protein_coding retained_intron MGP_AJ_T0091127.1 MGP_AJ_G0034278.1 mouse_genomes_project 8 125840127 125851316 + MGP_AJ_P0091127 Pard3 protein_coding protein_coding MGP_AJ_T0091128.1 MGP_AJ_G0034278.1 mouse_genomes_project 8 125856063 125883845 + MGP_AJ_P0091128 Pard3 protein_coding protein_coding MGP_AJ_T0091129.1 MGP_AJ_G0034278.1 mouse_genomes_project 8 125861274 125924734 + Pard3 protein_coding retained_intron MGP_AJ_T0091130.1 MGP_AJ_G0034278.1 mouse_genomes_project 8 125898417 125924750 + MGP_AJ_P0091130 Pard3 protein_coding protein_coding MGP_AJ_T0091131.1 MGP_AJ_G0034278.1 mouse_genomes_project 8 126029527 126060561 + Pard3 protein_coding processed_transcript MGP_AJ_T0090093.1 MGP_AJ_G0033938.1 mouse_genomes_project 8 91833928 91835587 + MGP_AJ_P0090093 Mt3 protein_coding protein_coding MGP_AJ_T0090427.1 MGP_AJ_G0034066.1 mouse_genomes_project 8 104610283 104677886 + MGP_AJ_P0090427 Cdh1 protein_coding protein_coding MGP_AJ_T0090428.1 MGP_AJ_G0034066.1 mouse_genomes_project 8 104610311 104677002 + MGP_AJ_P0090428 Cdh1 protein_coding protein_coding MGP_AJ_T0090429.1 MGP_AJ_G0034066.1 mouse_genomes_project 8 104611075 104661666 + Cdh1 protein_coding processed_transcript MGP_AJ_T0005321.1 MGP_AJ_G0004512.1 mouse_genomes_project 8 626074 660385 + Gm16553 antisense antisense MGP_AJ_T0090367.1 MGP_AJ_G0034041.1 mouse_genomes_project 8 103818764 103836455 + MGP_AJ_P0090367 Tsnaxip1 protein_coding protein_coding MGP_AJ_T0089124.1 MGP_AJ_G0033645.1 mouse_genomes_project 8 66228222 66254364 + MGP_AJ_P0089124 Lpl protein_coding protein_coding MGP_AJ_T0089125.1 MGP_AJ_G0033645.1 mouse_genomes_project 8 66228286 66254877 + MGP_AJ_P0089125 Lpl protein_coding nonsense_mediated_decay MGP_AJ_T0089126.1 MGP_AJ_G0033645.1 mouse_genomes_project 8 66228388 66237488 + Lpl protein_coding retained_intron MGP_AJ_T0089127.1 MGP_AJ_G0033645.1 mouse_genomes_project 8 66238560 66243634 + Lpl protein_coding processed_transcript MGP_AJ_T0016016.1 MGP_AJ_G0014111.1 mouse_genomes_project 8 79313520 79313871 - processed_pseudogene processed_pseudogene MGP_AJ_T0089657.1 MGP_AJ_G0033813.1 mouse_genomes_project 8 80866129 80900479 + MGP_AJ_P0089657 Mgat4d protein_coding protein_coding MGP_AJ_T0089658.1 MGP_AJ_G0033813.1 mouse_genomes_project 8 80879722 80903558 + Mgat4d protein_coding processed_transcript MGP_AJ_T0089346.1 MGP_AJ_G0033709.1 mouse_genomes_project 8 68172829 68181367 - MGP_AJ_P0089346 Pik3r2 protein_coding protein_coding MGP_AJ_T0089347.1 MGP_AJ_G0033709.1 mouse_genomes_project 8 68173114 68174042 - MGP_AJ_P0089347 Pik3r2 protein_coding protein_coding MGP_AJ_T0089348.1 MGP_AJ_G0033709.1 mouse_genomes_project 8 68173293 68174318 - Pik3r2 protein_coding retained_intron MGP_AJ_T0089349.1 MGP_AJ_G0033709.1 mouse_genomes_project 8 68176647 68177818 - Pik3r2 protein_coding retained_intron MGP_AJ_T0089350.1 MGP_AJ_G0033709.1 mouse_genomes_project 8 68177027 68179341 - MGP_AJ_P0089350 Pik3r2 protein_coding protein_coding MGP_AJ_T0089351.1 MGP_AJ_G0033709.1 mouse_genomes_project 8 68179662 68181333 - Pik3r2 protein_coding processed_transcript MGP_AJ_T0100240.1 MGP_AJ_G0038206.1 mouse_genomes_project 8 116679581 116679688 - Gm24035 snRNA snRNA MGP_AJ_T0005390.1 MGP_AJ_G0004567.1 mouse_genomes_project 8 112803876 112807476 - Gm16116 antisense antisense MGP_AJ_T0090281.1 MGP_AJ_G0034009.1 mouse_genomes_project 8 103148118 103196223 + MGP_AJ_P0090281 Cbfb protein_coding protein_coding MGP_AJ_T0090282.1 MGP_AJ_G0034009.1 mouse_genomes_project 8 103148188 103196215 + MGP_AJ_P0090282 Cbfb protein_coding protein_coding MGP_AJ_T0090283.1 MGP_AJ_G0034009.1 mouse_genomes_project 8 103148188 103196215 + MGP_AJ_P0090283 Cbfb protein_coding protein_coding MGP_AJ_T0090284.1 MGP_AJ_G0034009.1 mouse_genomes_project 8 103148389 103196215 + MGP_AJ_P0090284 Cbfb protein_coding protein_coding MGP_AJ_T0090285.1 MGP_AJ_G0034009.1 mouse_genomes_project 8 103148553 103156551 + Cbfb protein_coding retained_intron MGP_AJ_T0090286.1 MGP_AJ_G0034009.1 mouse_genomes_project 8 103148936 103172693 + Cbfb protein_coding processed_transcript MGP_AJ_T0090287.1 MGP_AJ_G0034009.1 mouse_genomes_project 8 103149008 103172673 + Cbfb protein_coding processed_transcript MGP_AJ_T0090077.1 MGP_AJ_G0033933.1 mouse_genomes_project 8 91651071 91690929 - MGP_AJ_P0090077 Amfr protein_coding protein_coding MGP_AJ_T0090078.1 MGP_AJ_G0033933.1 mouse_genomes_project 8 91652385 91654400 - Amfr protein_coding retained_intron MGP_AJ_T0090079.1 MGP_AJ_G0033933.1 mouse_genomes_project 8 91652441 91653445 - Amfr protein_coding processed_transcript MGP_AJ_T0090080.1 MGP_AJ_G0033933.1 mouse_genomes_project 8 91677555 91690393 - MGP_AJ_P0090080 Amfr protein_coding protein_coding MGP_AJ_T0090037.1 MGP_AJ_G0033920.1 mouse_genomes_project 8 90458326 90522069 + MGP_AJ_P0090037 Lpcat2 protein_coding protein_coding MGP_AJ_T0090038.1 MGP_AJ_G0033920.1 mouse_genomes_project 8 90458456 90473157 + Lpcat2 protein_coding processed_transcript MGP_AJ_T0090040.1 MGP_AJ_G0033920.1 mouse_genomes_project 8 90508996 90520830 + Lpcat2 protein_coding processed_transcript MGP_AJ_T0009119.1 MGP_AJ_G0007333.1 mouse_genomes_project 8 69687581 69690998 - Gm26586 lincRNA lincRNA MGP_AJ_T0088697.1 MGP_AJ_G0033520.1 mouse_genomes_project 8 33035429 33087634 + MGP_AJ_P0088697 unknown_likely_coding unknown_likely_coding MGP_AJ_T0090775.1 MGP_AJ_G0034182.1 mouse_genomes_project 8 118892185 118918773 - MGP_AJ_P0090775 1190005I06Rik protein_coding protein_coding MGP_AJ_T0090777.1 MGP_AJ_G0034182.1 mouse_genomes_project 8 118892384 118932534 - MGP_AJ_P0090777 1190005I06Rik protein_coding protein_coding MGP_AJ_T0090778.1 MGP_AJ_G0034182.1 mouse_genomes_project 8 118892518 118918644 - MGP_AJ_P0090778 1190005I06Rik protein_coding nonsense_mediated_decay MGP_AJ_T0089089.1 MGP_AJ_G0033634.1 mouse_genomes_project 8 63832283 63834302 + MGP_AJ_P0089089 Tktl2 protein_coding protein_coding MGP_AJ_T0089090.1 MGP_AJ_G0033634.1 mouse_genomes_project 8 63832286 63838835 + MGP_AJ_P0089090 Tktl2 protein_coding protein_coding MGP_AJ_T0090869.1 MGP_AJ_G0034201.1 mouse_genomes_project 8 120679008 120682740 - MGP_AJ_P0090869 Trhr2 protein_coding protein_coding MGP_AJ_T0101471.1 MGP_AJ_G0039437.1 mouse_genomes_project 8 18885261 18885353 - Gm22447 snoRNA snoRNA MGP_AJ_T0011709.1 MGP_AJ_G0009831.1 mouse_genomes_project 8 1209472 1209756 + Gm26102 misc_RNA misc_RNA MGP_AJ_T0009209.1 MGP_AJ_G0007396.1 mouse_genomes_project 8 121582201 121589654 + 4933417D19Rik lincRNA lincRNA MGP_AJ_T0005340.1 MGP_AJ_G0004526.1 mouse_genomes_project 8 19999065 20002856 + 1700041G16Rik antisense antisense MGP_AJ_T0005341.1 MGP_AJ_G0004526.1 mouse_genomes_project 8 20001597 20002055 + 1700041G16Rik antisense antisense MGP_AJ_T0089144.1 MGP_AJ_G0033649.1 mouse_genomes_project 8 66563746 66584952 + MGP_AJ_P0089144 Zfp930 protein_coding unknown_likely_coding MGP_AJ_T0089145.1 MGP_AJ_G0033649.1 mouse_genomes_project 8 66580753 66583391 + MGP_AJ_P0089145 Zfp930 protein_coding protein_coding MGP_AJ_T0088039.1 MGP_AJ_G0033289.1 mouse_genomes_project 8 425575 448349 + MGP_AJ_P0088039 Pnpla6 protein_coding unknown_likely_coding MGP_AJ_T0088040.1 MGP_AJ_G0033289.1 mouse_genomes_project 8 425597 454389 + MGP_AJ_P0088040 Pnpla6 protein_coding protein_coding MGP_AJ_T0088041.1 MGP_AJ_G0033289.1 mouse_genomes_project 8 425597 454389 + MGP_AJ_P0088041 Pnpla6 protein_coding protein_coding MGP_AJ_T0101481.1 MGP_AJ_G0039447.1 mouse_genomes_project 8 39856409 39856473 - Gm23531 snoRNA snoRNA MGP_AJ_T0089859.1 MGP_AJ_G0033866.1 mouse_genomes_project 8 82517347 82522532 + MGP_AJ_P0089859 Prdx2 protein_coding protein_coding MGP_AJ_T0089860.1 MGP_AJ_G0033866.1 mouse_genomes_project 8 82517371 82522532 + MGP_AJ_P0089860 Prdx2 protein_coding protein_coding MGP_AJ_T0089861.1 MGP_AJ_G0033866.1 mouse_genomes_project 8 82517454 82519872 + Prdx2 protein_coding retained_intron MGP_AJ_T0089862.1 MGP_AJ_G0033866.1 mouse_genomes_project 8 82517454 82518888 + Prdx2 protein_coding retained_intron MGP_AJ_T0089863.1 MGP_AJ_G0033866.1 mouse_genomes_project 8 82517527 82522532 + MGP_AJ_P0089863 Prdx2 protein_coding protein_coding MGP_AJ_T0089864.1 MGP_AJ_G0033866.1 mouse_genomes_project 8 82517617 82519390 + MGP_AJ_P0089864 Prdx2 protein_coding protein_coding MGP_AJ_T0089865.1 MGP_AJ_G0033866.1 mouse_genomes_project 8 82517999 82522357 + MGP_AJ_P0089865 Prdx2 protein_coding protein_coding MGP_AJ_T0089866.1 MGP_AJ_G0033866.1 mouse_genomes_project 8 82519218 82522013 + Prdx2 protein_coding retained_intron MGP_AJ_T0088584.1 MGP_AJ_G0033472.1 mouse_genomes_project 8 23144207 23175899 - MGP_AJ_P0088584 Hgsnat protein_coding protein_coding MGP_AJ_T0088561.1 MGP_AJ_G0033464.1 mouse_genomes_project 8 22922876 22927703 + MGP_AJ_P0088561 Plpp5 protein_coding nonsense_mediated_decay MGP_AJ_T0088562.1 MGP_AJ_G0033464.1 mouse_genomes_project 8 22922876 22927703 + MGP_AJ_P0088562 Plpp5 protein_coding nonsense_mediated_decay MGP_AJ_T0088563.1 MGP_AJ_G0033464.1 mouse_genomes_project 8 22922879 22927703 + Plpp5 protein_coding retained_intron MGP_AJ_T0088564.1 MGP_AJ_G0033464.1 mouse_genomes_project 8 22922879 22927703 + MGP_AJ_P0088564 Plpp5 protein_coding protein_coding MGP_AJ_T0088565.1 MGP_AJ_G0033464.1 mouse_genomes_project 8 22922879 22927703 + MGP_AJ_P0088565 Plpp5 protein_coding protein_coding MGP_AJ_T0088566.1 MGP_AJ_G0033464.1 mouse_genomes_project 8 22922915 22924967 + Plpp5 protein_coding retained_intron MGP_AJ_T0088567.1 MGP_AJ_G0033464.1 mouse_genomes_project 8 22923197 22927699 + Plpp5 protein_coding retained_intron MGP_AJ_T0088568.1 MGP_AJ_G0033464.1 mouse_genomes_project 8 22923271 22927703 + Plpp5 protein_coding processed_transcript MGP_AJ_T0088569.1 MGP_AJ_G0033464.1 mouse_genomes_project 8 22925773 22927264 + Plpp5 protein_coding retained_intron MGP_AJ_T0011017.1 MGP_AJ_G0009139.1 mouse_genomes_project 8 115706902 115706966 + Mir7078 miRNA miRNA MGP_AJ_T0089362.1 MGP_AJ_G0033718.1 mouse_genomes_project 8 68312721 68323741 + MGP_AJ_P0089362 Map1s protein_coding protein_coding MGP_AJ_T0088573.1 MGP_AJ_G0033468.1 mouse_genomes_project 8 22990431 23008809 + MGP_AJ_P0088573 Lsm1 protein_coding protein_coding MGP_AJ_T0100224.1 MGP_AJ_G0038190.1 mouse_genomes_project 8 84210887 84210995 - Gm22305 snRNA snRNA MGP_AJ_T0089793.1 MGP_AJ_G0033851.1 mouse_genomes_project 8 82243915 82247173 + MGP_AJ_P0089793 Lyl1 protein_coding protein_coding MGP_AJ_T0089150.1 MGP_AJ_G0033653.1 mouse_genomes_project 8 66979841 66994967 - MGP_AJ_P0089150 Zfp868 protein_coding protein_coding MGP_AJ_T0089151.1 MGP_AJ_G0033653.1 mouse_genomes_project 8 66980398 66988764 - MGP_AJ_P0089151 Zfp868 protein_coding protein_coding MGP_AJ_T0089152.1 MGP_AJ_G0033653.1 mouse_genomes_project 8 66981404 66983475 - Zfp868 protein_coding retained_intron MGP_AJ_T0089153.1 MGP_AJ_G0033653.1 mouse_genomes_project 8 66988280 66994964 - Zfp868 protein_coding retained_intron MGP_AJ_T0089927.1 MGP_AJ_G0033889.1 mouse_genomes_project 8 83384106 83424023 + Phkb protein_coding processed_transcript MGP_AJ_T0089928.1 MGP_AJ_G0033889.1 mouse_genomes_project 8 83384138 83484083 + MGP_AJ_P0089928 Phkb protein_coding nonsense_mediated_decay MGP_AJ_T0089929.1 MGP_AJ_G0033889.1 mouse_genomes_project 8 83384149 83606894 + MGP_AJ_P0089929 Phkb protein_coding protein_coding MGP_AJ_T0089930.1 MGP_AJ_G0033889.1 mouse_genomes_project 8 83384155 83469570 + Phkb protein_coding processed_transcript MGP_AJ_T0089931.1 MGP_AJ_G0033889.1 mouse_genomes_project 8 83384163 83469304 + MGP_AJ_P0089931 Phkb protein_coding protein_coding MGP_AJ_T0089932.1 MGP_AJ_G0033889.1 mouse_genomes_project 8 83385933 83451859 + MGP_AJ_P0089932 Phkb protein_coding protein_coding MGP_AJ_T0089933.1 MGP_AJ_G0033889.1 mouse_genomes_project 8 83386197 83424110 + MGP_AJ_P0089933 Phkb protein_coding nonsense_mediated_decay MGP_AJ_T0089934.1 MGP_AJ_G0033889.1 mouse_genomes_project 8 83561305 83575281 + MGP_AJ_P0089934 Phkb protein_coding protein_coding MGP_AJ_T0089935.1 MGP_AJ_G0033889.1 mouse_genomes_project 8 83580534 83606159 + Phkb protein_coding processed_transcript MGP_AJ_T0010995.1 MGP_AJ_G0009117.1 mouse_genomes_project 8 90516284 90516342 - Gm22151 miRNA miRNA MGP_AJ_T0089431.1 MGP_AJ_G0033735.1 mouse_genomes_project 8 69015431 69020837 + MGP_AJ_P0089431 Mvb12a protein_coding protein_coding MGP_AJ_T0002338.1 MGP_AJ_G0002248.1 mouse_genomes_project 8 106776519 106781727 + TEC TEC MGP_AJ_T0089097.1 MGP_AJ_G0033640.1 mouse_genomes_project 8 64898479 64923634 + MGP_AJ_P0089097 Nat3 protein_coding protein_coding MGP_AJ_T0010947.1 MGP_AJ_G0009069.1 mouse_genomes_project 8 10087659 10087720 + Mir7065 miRNA miRNA MGP_AJ_T0010983.1 MGP_AJ_G0009105.1 mouse_genomes_project 8 81752954 81753029 + Mir23a miRNA miRNA MGP_AJ_T0090309.1 MGP_AJ_G0034016.1 mouse_genomes_project 8 103258368 103267201 - MGP_AJ_P0090309 4931428F04Rik protein_coding protein_coding MGP_AJ_T0090310.1 MGP_AJ_G0034016.1 mouse_genomes_project 8 103258368 103267201 - MGP_AJ_P0090310 4931428F04Rik protein_coding protein_coding MGP_AJ_T0088777.1 MGP_AJ_G0033543.1 mouse_genomes_project 8 38504096 38526964 - MGP_AJ_P0088777 Fgl1 protein_coding protein_coding MGP_AJ_T0088778.1 MGP_AJ_G0033543.1 mouse_genomes_project 8 38510276 38526961 - Fgl1 protein_coding retained_intron MGP_AJ_T0090849.1 MGP_AJ_G0034199.1 mouse_genomes_project 8 120267859 120314884 + MGP_AJ_P0090849 Banp protein_coding protein_coding MGP_AJ_T0090850.1 MGP_AJ_G0034199.1 mouse_genomes_project 8 120268601 120344144 + MGP_AJ_P0090850 Banp protein_coding protein_coding MGP_AJ_T0090851.1 MGP_AJ_G0034199.1 mouse_genomes_project 8 120268653 120347225 + MGP_AJ_P0090851 Banp protein_coding protein_coding MGP_AJ_T0090852.1 MGP_AJ_G0034199.1 mouse_genomes_project 8 120268684 120314882 + MGP_AJ_P0090852 Banp protein_coding nonsense_mediated_decay MGP_AJ_T0090853.1 MGP_AJ_G0034199.1 mouse_genomes_project 8 120268689 120343843 + MGP_AJ_P0090853 Banp protein_coding protein_coding MGP_AJ_T0090854.1 MGP_AJ_G0034199.1 mouse_genomes_project 8 120268694 120309270 + MGP_AJ_P0090854 Banp protein_coding protein_coding MGP_AJ_T0090855.1 MGP_AJ_G0034199.1 mouse_genomes_project 8 120268705 120309261 + MGP_AJ_P0090855 Banp protein_coding nonsense_mediated_decay MGP_AJ_T0090856.1 MGP_AJ_G0034199.1 mouse_genomes_project 8 120268714 120309287 + MGP_AJ_P0090856 Banp protein_coding protein_coding MGP_AJ_T0090857.1 MGP_AJ_G0034199.1 mouse_genomes_project 8 120292272 120294408 + Banp protein_coding retained_intron MGP_AJ_T0090858.1 MGP_AJ_G0034199.1 mouse_genomes_project 8 120292320 120343541 + MGP_AJ_P0090858 Banp protein_coding protein_coding MGP_AJ_T0090859.1 MGP_AJ_G0034199.1 mouse_genomes_project 8 120296242 120307702 + Banp protein_coding retained_intron MGP_AJ_T0090860.1 MGP_AJ_G0034199.1 mouse_genomes_project 8 120309158 120314939 + Banp protein_coding retained_intron MGP_AJ_T0090861.1 MGP_AJ_G0034199.1 mouse_genomes_project 8 120309304 120343925 + MGP_AJ_P0090861 Banp protein_coding protein_coding MGP_AJ_T0090862.1 MGP_AJ_G0034199.1 mouse_genomes_project 8 120314789 120343513 + MGP_AJ_P0090862 Banp protein_coding protein_coding MGP_AJ_T0090863.1 MGP_AJ_G0034199.1 mouse_genomes_project 8 120318368 120338361 + Banp protein_coding processed_transcript MGP_AJ_T0090864.1 MGP_AJ_G0034199.1 mouse_genomes_project 8 120318546 120324896 + Banp protein_coding retained_intron MGP_AJ_T0090957.1 MGP_AJ_G0034227.1 mouse_genomes_project 8 121571413 121579345 + MGP_AJ_P0090957 Cdk10 protein_coding protein_coding MGP_AJ_T0089708.1 MGP_AJ_G0033829.1 mouse_genomes_project 8 81541521 81544814 + MGP_AJ_P0089708 1700067K01Rik protein_coding protein_coding MGP_AJ_T0089709.1 MGP_AJ_G0033829.1 mouse_genomes_project 8 81541723 81544713 + MGP_AJ_P0089709 1700067K01Rik protein_coding protein_coding MGP_AJ_T0089710.1 MGP_AJ_G0033829.1 mouse_genomes_project 8 81541723 81544707 + MGP_AJ_P0089710 1700067K01Rik protein_coding nonsense_mediated_decay MGP_AJ_T0089711.1 MGP_AJ_G0033829.1 mouse_genomes_project 8 81542364 81543323 + 1700067K01Rik protein_coding retained_intron MGP_AJ_T0090570.1 MGP_AJ_G0034114.1 mouse_genomes_project 8 109172594 109197006 - MGP_AJ_P0090570 Clec18a protein_coding nonsense_mediated_decay MGP_AJ_T0090571.1 MGP_AJ_G0034114.1 mouse_genomes_project 8 109172594 109197006 - MGP_AJ_P0090571 Clec18a protein_coding nonsense_mediated_decay MGP_AJ_T0090572.1 MGP_AJ_G0034114.1 mouse_genomes_project 8 109172594 109197006 - MGP_AJ_P0090572 Clec18a protein_coding nonsense_mediated_decay MGP_AJ_T0090573.1 MGP_AJ_G0034114.1 mouse_genomes_project 8 109183261 109197006 - MGP_AJ_P0090573 Clec18a protein_coding protein_coding MGP_AJ_T0090574.1 MGP_AJ_G0034114.1 mouse_genomes_project 8 109183261 109196780 - MGP_AJ_P0090574 Clec18a protein_coding protein_coding MGP_AJ_T0090575.1 MGP_AJ_G0034114.1 mouse_genomes_project 8 109183262 109197006 - MGP_AJ_P0090575 Clec18a protein_coding nonsense_mediated_decay MGP_AJ_T0090576.1 MGP_AJ_G0034114.1 mouse_genomes_project 8 109183262 109207577 - MGP_AJ_P0090576 Clec18a protein_coding nonsense_mediated_decay MGP_AJ_T0089068.1 MGP_AJ_G0033628.1 mouse_genomes_project 8 62265521 62271516 - MGP_AJ_P0089068 Trim75 protein_coding protein_coding MGP_AJ_T0016027.1 MGP_AJ_G0014122.1 mouse_genomes_project 8 95113452 95114851 - processed_pseudogene processed_pseudogene MGP_AJ_T0009100.1 MGP_AJ_G0007315.1 mouse_genomes_project 8 31314470 31315994 + Gm26768 lincRNA lincRNA MGP_AJ_T0089923.1 MGP_AJ_G0033886.1 mouse_genomes_project 8 83076185 83093761 - MGP_AJ_P0089923 Dnaja2 protein_coding protein_coding MGP_AJ_T0089008.1 MGP_AJ_G0033614.1 mouse_genomes_project 8 58216010 58260262 - MGP_AJ_P0089008 Clcn3 protein_coding protein_coding MGP_AJ_T0089009.1 MGP_AJ_G0033614.1 mouse_genomes_project 8 58216487 58228590 - Clcn3 protein_coding processed_transcript MGP_AJ_T0089010.1 MGP_AJ_G0033614.1 mouse_genomes_project 8 58217522 58260389 - MGP_AJ_P0089010 Clcn3 protein_coding protein_coding MGP_AJ_T0089011.1 MGP_AJ_G0033614.1 mouse_genomes_project 8 58217549 58260874 - Clcn3 protein_coding retained_intron MGP_AJ_T0089012.1 MGP_AJ_G0033614.1 mouse_genomes_project 8 58217549 58288649 - MGP_AJ_P0089012 Clcn3 protein_coding protein_coding MGP_AJ_T0089013.1 MGP_AJ_G0033614.1 mouse_genomes_project 8 58217549 58288649 - MGP_AJ_P0089013 Clcn3 protein_coding protein_coding MGP_AJ_T0089014.1 MGP_AJ_G0033614.1 mouse_genomes_project 8 58233917 58260420 - Clcn3 protein_coding retained_intron MGP_AJ_T0089015.1 MGP_AJ_G0033614.1 mouse_genomes_project 8 58240979 58288654 - Clcn3 protein_coding retained_intron MGP_AJ_T0089016.1 MGP_AJ_G0033614.1 mouse_genomes_project 8 58244262 58288696 - Clcn3 protein_coding retained_intron MGP_AJ_T0009190.1 MGP_AJ_G0007382.1 mouse_genomes_project 8 118882121 118882847 + Gm26739 lincRNA lincRNA MGP_AJ_T0089069.1 MGP_AJ_G0033629.1 mouse_genomes_project 8 62280631 62303388 - MGP_AJ_P0089069 Trim60 protein_coding protein_coding MGP_AJ_T0002339.1 MGP_AJ_G0002249.1 mouse_genomes_project 8 106907487 106909191 + TEC TEC MGP_AJ_T0090488.1 MGP_AJ_G0034088.1 mouse_genomes_project 8 107617197 107621242 - MGP_AJ_P0090488 Hp protein_coding protein_coding MGP_AJ_T0009086.1 MGP_AJ_G0007305.1 mouse_genomes_project 8 21632531 21650271 + Gm26714 lincRNA lincRNA MGP_AJ_T0089326.1 MGP_AJ_G0033698.1 mouse_genomes_project 8 68016149 68020201 + MGP_AJ_P0089326 Lrrc25 protein_coding protein_coding MGP_AJ_T0088615.1 MGP_AJ_G0033484.1 mouse_genomes_project 8 24418406 24423493 - MGP_AJ_P0088615 Got1l1 protein_coding protein_coding MGP_AJ_T0102919.1 MGP_AJ_G0040659.1 mouse_genomes_project 8 16241733 16244223 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0005330.1 MGP_AJ_G0004519.1 mouse_genomes_project 8 9844809 9861283 - Gm15351 antisense antisense MGP_AJ_T0005331.1 MGP_AJ_G0004519.1 mouse_genomes_project 8 9858189 9861422 - Gm15351 antisense antisense MGP_AJ_T0005332.1 MGP_AJ_G0004519.1 mouse_genomes_project 8 9860245 9861137 - Gm15351 antisense antisense MGP_AJ_T0088643.1 MGP_AJ_G0033501.1 mouse_genomes_project 8 30621101 30653348 + MGP_AJ_P0088643 Purg protein_coding protein_coding MGP_AJ_T0088644.1 MGP_AJ_G0033501.1 mouse_genomes_project 8 30621101 30622308 + MGP_AJ_P0088644 Purg protein_coding protein_coding MGP_AJ_T0090043.1 MGP_AJ_G0033923.1 mouse_genomes_project 8 90627948 90654896 - MGP_AJ_P0090043 Ces1a protein_coding protein_coding MGP_AJ_T0088126.1 MGP_AJ_G0033313.1 mouse_genomes_project 8 1194415 1210505 - Timm44 protein_coding retained_intron MGP_AJ_T0088127.1 MGP_AJ_G0033313.1 mouse_genomes_project 8 1194415 1210533 - MGP_AJ_P0088127 Timm44 protein_coding protein_coding MGP_AJ_T0088128.1 MGP_AJ_G0033313.1 mouse_genomes_project 8 1194433 1210491 - MGP_AJ_P0088128 Timm44 protein_coding nonsense_mediated_decay MGP_AJ_T0088129.1 MGP_AJ_G0033313.1 mouse_genomes_project 8 1194668 1195420 - Timm44 protein_coding retained_intron MGP_AJ_T0088130.1 MGP_AJ_G0033313.1 mouse_genomes_project 8 1194784 1201701 - Timm44 protein_coding retained_intron MGP_AJ_T0088131.1 MGP_AJ_G0033313.1 mouse_genomes_project 8 1200768 1201638 - Timm44 protein_coding retained_intron MGP_AJ_T0088132.1 MGP_AJ_G0033313.1 mouse_genomes_project 8 1200949 1202318 - Timm44 protein_coding retained_intron MGP_AJ_T0088133.1 MGP_AJ_G0033313.1 mouse_genomes_project 8 1201999 1210502 - Timm44 protein_coding processed_transcript MGP_AJ_T0088134.1 MGP_AJ_G0033313.1 mouse_genomes_project 8 1202057 1210493 - Timm44 protein_coding retained_intron MGP_AJ_T0090232.1 MGP_AJ_G0033989.1 mouse_genomes_project 8 102246612 102253022 + MGP_AJ_P0090232 Cmtm3 protein_coding unknown_likely_coding MGP_AJ_T0088155.1 MGP_AJ_G0033318.1 mouse_genomes_project 8 1602000 1602827 - MGP_AJ_P0088155 protein_coding protein_coding MGP_AJ_T0088019.1 MGP_AJ_G0033284.1 mouse_genomes_project 8 261198 365638 + MGP_AJ_P0088019 Arhgef18 protein_coding protein_coding MGP_AJ_T0088020.1 MGP_AJ_G0033284.1 mouse_genomes_project 8 301793 359668 + Arhgef18 protein_coding retained_intron MGP_AJ_T0088021.1 MGP_AJ_G0033284.1 mouse_genomes_project 8 301860 338389 + Arhgef18 protein_coding processed_transcript MGP_AJ_T0088022.1 MGP_AJ_G0033284.1 mouse_genomes_project 8 301860 338757 + MGP_AJ_P0088022 Arhgef18 protein_coding protein_coding MGP_AJ_T0088023.1 MGP_AJ_G0033284.1 mouse_genomes_project 8 346240 365628 + Arhgef18 protein_coding retained_intron MGP_AJ_T0088024.1 MGP_AJ_G0033284.1 mouse_genomes_project 8 359785 363296 + Arhgef18 protein_coding retained_intron MGP_AJ_T0089703.1 MGP_AJ_G0033826.1 mouse_genomes_project 8 81495810 81510468 + MGP_AJ_P0089703 Asf1b protein_coding protein_coding MGP_AJ_T0089704.1 MGP_AJ_G0033826.1 mouse_genomes_project 8 81496017 81508122 + Asf1b protein_coding processed_transcript MGP_AJ_T0089705.1 MGP_AJ_G0033826.1 mouse_genomes_project 8 81505138 81508815 + Asf1b protein_coding retained_intron MGP_AJ_T0088909.1 MGP_AJ_G0033579.1 mouse_genomes_project 8 44884846 44903652 + MGP_AJ_P0088909 Rwdd4a protein_coding protein_coding MGP_AJ_T0088910.1 MGP_AJ_G0033579.1 mouse_genomes_project 8 44884846 44902106 + MGP_AJ_P0088910 Rwdd4a protein_coding nonsense_mediated_decay MGP_AJ_T0088911.1 MGP_AJ_G0033579.1 mouse_genomes_project 8 44884868 44895026 + MGP_AJ_P0088911 Rwdd4a protein_coding protein_coding MGP_AJ_T0088912.1 MGP_AJ_G0033579.1 mouse_genomes_project 8 44898734 44902117 + Rwdd4a protein_coding processed_transcript MGP_AJ_T0088913.1 MGP_AJ_G0033579.1 mouse_genomes_project 8 44901284 44903782 + Rwdd4a protein_coding retained_intron MGP_AJ_T0088808.1 MGP_AJ_G0033558.1 mouse_genomes_project 8 42740635 42756119 - MGP_AJ_P0088808 Tlr3 protein_coding protein_coding MGP_AJ_T0088809.1 MGP_AJ_G0033558.1 mouse_genomes_project 8 42740881 42756188 - MGP_AJ_P0088809 Tlr3 protein_coding protein_coding MGP_AJ_T0090517.1 MGP_AJ_G0034098.1 mouse_genomes_project 8 108143040 108154374 + MGP_AJ_P0090517 Zfp612 protein_coding protein_coding MGP_AJ_T0015984.1 MGP_AJ_G0014079.1 mouse_genomes_project 8 28441575 28442041 - processed_pseudogene processed_pseudogene MGP_AJ_T0089956.1 MGP_AJ_G0033897.1 mouse_genomes_project 8 85201575 85505080 - MGP_AJ_P0089956 Zfp423 protein_coding protein_coding MGP_AJ_T0089957.1 MGP_AJ_G0033897.1 mouse_genomes_project 8 85201578 85436497 - MGP_AJ_P0089957 Zfp423 protein_coding protein_coding MGP_AJ_T0089958.1 MGP_AJ_G0033897.1 mouse_genomes_project 8 85322618 85499006 - MGP_AJ_P0089958 Zfp423 protein_coding protein_coding MGP_AJ_T0089959.1 MGP_AJ_G0033897.1 mouse_genomes_project 8 85322773 85343580 - MGP_AJ_P0089959 Zfp423 protein_coding protein_coding MGP_AJ_T0089960.1 MGP_AJ_G0033897.1 mouse_genomes_project 8 85322942 85489054 - Zfp423 protein_coding processed_transcript MGP_AJ_T0089961.1 MGP_AJ_G0033897.1 mouse_genomes_project 8 85322959 85493741 - Zfp423 protein_coding processed_transcript MGP_AJ_T0090990.1 MGP_AJ_G0034232.1 mouse_genomes_project 8 121685304 121723928 + MGP_AJ_P0090990 Spire2 protein_coding protein_coding MGP_AJ_T0015990.1 MGP_AJ_G0014085.1 mouse_genomes_project 8 35117365 35118381 - processed_pseudogene processed_pseudogene MGP_AJ_T0100199.1 MGP_AJ_G0038165.1 mouse_genomes_project 8 22130884 22130987 + Gm23898 snRNA snRNA MGP_AJ_T0089527.1 MGP_AJ_G0033766.1 mouse_genomes_project 8 70014691 70026595 - MGP_AJ_P0089527 Slc35e1 protein_coding protein_coding MGP_AJ_T0089528.1 MGP_AJ_G0033766.1 mouse_genomes_project 8 70018624 70026198 - MGP_AJ_P0089528 Slc35e1 protein_coding protein_coding MGP_AJ_T0098480.1 MGP_AJ_G0036464.1 mouse_genomes_project 8 86724869 86725766 - pseudogene pseudogene MGP_AJ_T0010966.1 MGP_AJ_G0009088.1 mouse_genomes_project 8 62378548 62378632 - Gm23419 miRNA miRNA MGP_AJ_T0089707.1 MGP_AJ_G0033828.1 mouse_genomes_project 8 81537731 81540406 + MGP_AJ_P0089707 protein_coding protein_coding MGP_AJ_T0089258.1 MGP_AJ_G0033682.1 mouse_genomes_project 8 67686524 67696384 - MGP_AJ_P0089258 Ddx49 protein_coding protein_coding MGP_AJ_T0089259.1 MGP_AJ_G0033682.1 mouse_genomes_project 8 67686535 67696347 - Ddx49 protein_coding retained_intron MGP_AJ_T0089260.1 MGP_AJ_G0033682.1 mouse_genomes_project 8 67687244 67689396 - Ddx49 protein_coding retained_intron MGP_AJ_T0089261.1 MGP_AJ_G0033682.1 mouse_genomes_project 8 67688456 67696368 - MGP_AJ_P0089261 Ddx49 protein_coding unknown_likely_coding MGP_AJ_T0089262.1 MGP_AJ_G0033682.1 mouse_genomes_project 8 67689478 67696358 - Ddx49 protein_coding retained_intron MGP_AJ_T0089263.1 MGP_AJ_G0033682.1 mouse_genomes_project 8 67694691 67696329 - Ddx49 protein_coding retained_intron MGP_AJ_T0090433.1 MGP_AJ_G0034069.1 mouse_genomes_project 8 104905600 104913247 - MGP_AJ_P0090433 protein_coding protein_coding MGP_AJ_T0090434.1 MGP_AJ_G0034069.1 mouse_genomes_project 8 104905699 104913171 - MGP_AJ_P0090434 protein_coding protein_coding MGP_AJ_T0090435.1 MGP_AJ_G0034069.1 mouse_genomes_project 8 104905776 104913257 - MGP_AJ_P0090435 protein_coding protein_coding MGP_AJ_T0098488.1 MGP_AJ_G0036472.1 mouse_genomes_project 8 122239269 122240277 + pseudogene pseudogene MGP_AJ_T0090031.1 MGP_AJ_G0033916.1 mouse_genomes_project 8 89392873 89396265 - MGP_AJ_P0090031 Irx3 protein_coding protein_coding MGP_AJ_T0090032.1 MGP_AJ_G0033916.1 mouse_genomes_project 8 89392873 89396264 - MGP_AJ_P0090032 Irx3 protein_coding protein_coding MGP_AJ_T0088919.1 MGP_AJ_G0033583.1 mouse_genomes_project 8 45064838 45066594 + MGP_AJ_P0088919 protein_coding protein_coding MGP_AJ_T0089968.1 MGP_AJ_G0033899.1 mouse_genomes_project 8 85694126 85726903 + MGP_AJ_P0089968 Heatr3 protein_coding protein_coding MGP_AJ_T0089969.1 MGP_AJ_G0033899.1 mouse_genomes_project 8 85712135 85713826 + Heatr3 protein_coding retained_intron MGP_AJ_T0089970.1 MGP_AJ_G0033899.1 mouse_genomes_project 8 85716394 85726896 + Heatr3 protein_coding retained_intron MGP_AJ_T0089971.1 MGP_AJ_G0033899.1 mouse_genomes_project 8 85719500 85721851 + Heatr3 protein_coding retained_intron MGP_AJ_T0089583.1 MGP_AJ_G0033786.1 mouse_genomes_project 8 75669268 75676947 + MGP_AJ_P0089583 Ttc29 protein_coding protein_coding MGP_AJ_T0089584.1 MGP_AJ_G0033786.1 mouse_genomes_project 8 75669273 75676805 + MGP_AJ_P0089584 Ttc29 protein_coding protein_coding MGP_AJ_T0089585.1 MGP_AJ_G0033786.1 mouse_genomes_project 8 75669286 75673990 + Ttc29 protein_coding processed_transcript MGP_AJ_T0089586.1 MGP_AJ_G0033786.1 mouse_genomes_project 8 75669313 75851289 + MGP_AJ_P0089586 Ttc29 protein_coding protein_coding MGP_AJ_T0089587.1 MGP_AJ_G0033786.1 mouse_genomes_project 8 75669321 75673934 + Ttc29 protein_coding processed_transcript MGP_AJ_T0089588.1 MGP_AJ_G0033786.1 mouse_genomes_project 8 75674765 75850646 + MGP_AJ_P0089588 Ttc29 protein_coding protein_coding MGP_AJ_T0089589.1 MGP_AJ_G0033786.1 mouse_genomes_project 8 75707489 75732788 + Ttc29 protein_coding retained_intron MGP_AJ_T0089590.1 MGP_AJ_G0033786.1 mouse_genomes_project 8 75847952 75850737 + Ttc29 protein_coding processed_transcript MGP_AJ_T0002337.1 MGP_AJ_G0002247.1 mouse_genomes_project 8 105144955 105145738 + TEC TEC MGP_AJ_T0090402.1 MGP_AJ_G0034056.1 mouse_genomes_project 8 104061624 104138948 + MGP_AJ_P0090402 Nfatc3 protein_coding protein_coding MGP_AJ_T0090403.1 MGP_AJ_G0034056.1 mouse_genomes_project 8 104061912 104127823 + MGP_AJ_P0090403 Nfatc3 protein_coding unknown_likely_coding MGP_AJ_T0090019.1 MGP_AJ_G0033914.1 mouse_genomes_project 8 88809478 88907788 - MGP_AJ_P0090019 Rpgrip1l protein_coding protein_coding MGP_AJ_T0090020.1 MGP_AJ_G0033914.1 mouse_genomes_project 8 88809869 88907845 - MGP_AJ_P0090020 Rpgrip1l protein_coding unknown_likely_coding MGP_AJ_T0090021.1 MGP_AJ_G0033914.1 mouse_genomes_project 8 88811404 88907748 - MGP_AJ_P0090021 Rpgrip1l protein_coding nonsense_mediated_decay MGP_AJ_T0090022.1 MGP_AJ_G0033914.1 mouse_genomes_project 8 88863553 88870684 - Rpgrip1l protein_coding retained_intron MGP_AJ_T0090023.1 MGP_AJ_G0033914.1 mouse_genomes_project 8 88902561 88905606 - MGP_AJ_P0090023 Rpgrip1l protein_coding protein_coding MGP_AJ_T0089403.1 MGP_AJ_G0033727.1 mouse_genomes_project 8 68877330 68881223 + MGP_AJ_P0089403 Ankle1 protein_coding protein_coding MGP_AJ_T0089404.1 MGP_AJ_G0033727.1 mouse_genomes_project 8 68877336 68881187 + Ankle1 protein_coding retained_intron MGP_AJ_T0089405.1 MGP_AJ_G0033727.1 mouse_genomes_project 8 68877342 68880797 + Ankle1 protein_coding retained_intron MGP_AJ_T0089406.1 MGP_AJ_G0033727.1 mouse_genomes_project 8 68877344 68880804 + MGP_AJ_P0089406 Ankle1 protein_coding protein_coding MGP_AJ_T0089407.1 MGP_AJ_G0033727.1 mouse_genomes_project 8 68879011 68880478 + Ankle1 protein_coding retained_intron MGP_AJ_T0088406.1 MGP_AJ_G0033416.1 mouse_genomes_project 8 19092396 19093376 - MGP_AJ_P0088406 Defb11 protein_coding protein_coding MGP_AJ_T0090095.1 MGP_AJ_G0033940.1 mouse_genomes_project 8 91861424 91862661 + MGP_AJ_P0090095 Mt1 protein_coding protein_coding MGP_AJ_T0101476.1 MGP_AJ_G0039442.1 mouse_genomes_project 8 22833045 22833175 + Gm24992 snoRNA snoRNA MGP_AJ_T0089108.1 MGP_AJ_G0033642.1 mouse_genomes_project 8 65634844 65703513 + MGP_AJ_P0089108 Sh2d4a protein_coding protein_coding MGP_AJ_T0090921.1 MGP_AJ_G0034218.1 mouse_genomes_project 8 121186198 121205520 + MGP_AJ_P0090921 Cdh15 protein_coding protein_coding MGP_AJ_T0088998.1 MGP_AJ_G0033611.1 mouse_genomes_project 8 57823860 57864853 + MGP_AJ_P0088998 Aadat protein_coding protein_coding MGP_AJ_T0089521.1 MGP_AJ_G0033763.1 mouse_genomes_project 8 69960039 69978419 - MGP_AJ_P0089521 Calr3 protein_coding protein_coding MGP_AJ_T0089522.1 MGP_AJ_G0033763.1 mouse_genomes_project 8 69960046 69969751 - MGP_AJ_P0089522 Calr3 protein_coding protein_coding MGP_AJ_T0100206.1 MGP_AJ_G0038172.1 mouse_genomes_project 8 43205340 43205466 - Gm25309 snRNA snRNA MGP_AJ_T0089228.1 MGP_AJ_G0033678.1 mouse_genomes_project 8 67573454 67603331 - Slc25a42 protein_coding retained_intron MGP_AJ_T0089229.1 MGP_AJ_G0033678.1 mouse_genomes_project 8 67573454 67603331 - MGP_AJ_P0089229 Slc25a42 protein_coding protein_coding MGP_AJ_T0089230.1 MGP_AJ_G0033678.1 mouse_genomes_project 8 67573454 67603282 - MGP_AJ_P0089230 Slc25a42 protein_coding protein_coding MGP_AJ_T0089231.1 MGP_AJ_G0033678.1 mouse_genomes_project 8 67577781 67603331 - Slc25a42 protein_coding retained_intron MGP_AJ_T0089232.1 MGP_AJ_G0033678.1 mouse_genomes_project 8 67582434 67603331 - Slc25a42 protein_coding retained_intron MGP_AJ_T0090865.1 MGP_AJ_G0034200.1 mouse_genomes_project 8 120602741 120658463 + MGP_AJ_P0090865 Zfpm1 protein_coding protein_coding MGP_AJ_T0090866.1 MGP_AJ_G0034200.1 mouse_genomes_project 8 120628764 120645195 + Zfpm1 protein_coding processed_transcript MGP_AJ_T0090867.1 MGP_AJ_G0034200.1 mouse_genomes_project 8 120654922 120656241 + Zfpm1 protein_coding processed_transcript MGP_AJ_T0090868.1 MGP_AJ_G0034200.1 mouse_genomes_project 8 120655010 120656973 + MGP_AJ_P0090868 Zfpm1 protein_coding protein_coding MGP_AJ_T0011721.1 MGP_AJ_G0009843.1 mouse_genomes_project 8 77449210 77449385 + Gm27820 misc_RNA misc_RNA MGP_AJ_T0089924.1 MGP_AJ_G0033887.1 mouse_genomes_project 8 83178476 83233909 - MGP_AJ_P0089924 Neto2 protein_coding protein_coding MGP_AJ_T0089925.1 MGP_AJ_G0033887.1 mouse_genomes_project 8 83178603 83243605 - MGP_AJ_P0089925 Neto2 protein_coding unknown_likely_coding MGP_AJ_T0016002.1 MGP_AJ_G0014097.1 mouse_genomes_project 8 63912046 63912343 - processed_pseudogene processed_pseudogene MGP_AJ_T0088306.1 MGP_AJ_G0033367.1 mouse_genomes_project 8 10741345 10754075 + MGP_AJ_P0088306 Upf3a protein_coding protein_coding MGP_AJ_T0100214.1 MGP_AJ_G0038180.1 mouse_genomes_project 8 62954478 62954585 - Gm23515 snRNA snRNA MGP_AJ_T0089721.1 MGP_AJ_G0033833.1 mouse_genomes_project 8 81584616 81586696 - MGP_AJ_P0089721 Rln3 protein_coding protein_coding MGP_AJ_T0090006.1 MGP_AJ_G0033912.1 mouse_genomes_project 8 88660288 88714463 + MGP_AJ_P0090006 Rbl2 protein_coding protein_coding MGP_AJ_T0090007.1 MGP_AJ_G0033912.1 mouse_genomes_project 8 88660325 88670191 + Rbl2 protein_coding retained_intron MGP_AJ_T0090008.1 MGP_AJ_G0033912.1 mouse_genomes_project 8 88696418 88705727 + Rbl2 protein_coding retained_intron MGP_AJ_T0090009.1 MGP_AJ_G0033912.1 mouse_genomes_project 8 88696455 88704672 + Rbl2 protein_coding processed_transcript MGP_AJ_T0090011.1 MGP_AJ_G0033912.1 mouse_genomes_project 8 88702865 88706449 + Rbl2 protein_coding retained_intron MGP_AJ_T0090012.1 MGP_AJ_G0033912.1 mouse_genomes_project 8 88704276 88706389 + Rbl2 protein_coding retained_intron MGP_AJ_T0090013.1 MGP_AJ_G0033912.1 mouse_genomes_project 8 88705751 88706710 + Rbl2 protein_coding retained_intron MGP_AJ_T0091027.1 MGP_AJ_G0034249.1 mouse_genomes_project 8 122611517 122728046 + MGP_AJ_P0091027 Galnt2 protein_coding protein_coding MGP_AJ_T0091028.1 MGP_AJ_G0034249.1 mouse_genomes_project 8 122611641 122716393 + Galnt2 protein_coding processed_transcript MGP_AJ_T0091029.1 MGP_AJ_G0034249.1 mouse_genomes_project 8 122676343 122705181 + Galnt2 protein_coding processed_transcript MGP_AJ_T0091030.1 MGP_AJ_G0034249.1 mouse_genomes_project 8 122676605 122728048 + Galnt2 protein_coding processed_transcript MGP_AJ_T0089619.1 MGP_AJ_G0033798.1 mouse_genomes_project 8 77444935 77469168 - Hhip protein_coding processed_transcript MGP_AJ_T0089620.1 MGP_AJ_G0033798.1 mouse_genomes_project 8 77449165 77537615 - MGP_AJ_P0089620 Hhip protein_coding protein_coding MGP_AJ_T0089952.1 MGP_AJ_G0033894.1 mouse_genomes_project 8 84378168 84422134 - MGP_AJ_P0089952 N4bp1 protein_coding protein_coding MGP_AJ_T0088389.1 MGP_AJ_G0033400.1 mouse_genomes_project 8 16233929 16235874 + MGP_AJ_P0088389 Defb3 protein_coding protein_coding MGP_AJ_T0088052.1 MGP_AJ_G0033293.1 mouse_genomes_project 8 537914 540601 + MGP_AJ_P0088052 Pet100 protein_coding protein_coding MGP_AJ_T0005333.1 MGP_AJ_G0004520.1 mouse_genomes_project 8 10019742 10026406 + Gm17023 antisense antisense MGP_AJ_T0088838.1 MGP_AJ_G0033561.1 mouse_genomes_project 8 43275014 43284542 + MGP_AJ_P0088838 Ccdc110 protein_coding protein_coding MGP_AJ_T0088839.1 MGP_AJ_G0033561.1 mouse_genomes_project 8 43275100 43281897 + MGP_AJ_P0088839 Ccdc110 protein_coding nonsense_mediated_decay MGP_AJ_T0088203.1 MGP_AJ_G0033341.1 mouse_genomes_project 8 9217576 9219415 + MGP_AJ_P0088203 A230072I06Rik protein_coding protein_coding MGP_AJ_T0090911.1 MGP_AJ_G0034214.1 mouse_genomes_project 8 120941601 120945572 + MGP_AJ_P0090911 Trappc2l protein_coding protein_coding MGP_AJ_T0088171.1 MGP_AJ_G0033330.1 mouse_genomes_project 8 7895991 7917486 - MGP_AJ_P0088171 Irs2 protein_coding protein_coding MGP_AJ_T0089693.1 MGP_AJ_G0033824.1 mouse_genomes_project 8 81442160 81481508 + MGP_AJ_P0089693 Adgrl1 protein_coding nonsense_mediated_decay MGP_AJ_T0089694.1 MGP_AJ_G0033824.1 mouse_genomes_project 8 81442301 81481508 + MGP_AJ_P0089694 Adgrl1 protein_coding protein_coding MGP_AJ_T0089695.1 MGP_AJ_G0033824.1 mouse_genomes_project 8 81442316 81481483 + MGP_AJ_P0089695 Adgrl1 protein_coding protein_coding MGP_AJ_T0089696.1 MGP_AJ_G0033824.1 mouse_genomes_project 8 81442316 81481483 + MGP_AJ_P0089696 Adgrl1 protein_coding protein_coding MGP_AJ_T0089697.1 MGP_AJ_G0033824.1 mouse_genomes_project 8 81455625 81483449 + MGP_AJ_P0089697 Adgrl1 protein_coding protein_coding MGP_AJ_T0089698.1 MGP_AJ_G0033824.1 mouse_genomes_project 8 81464584 81471567 + Adgrl1 protein_coding processed_transcript MGP_AJ_T0089700.1 MGP_AJ_G0033824.1 mouse_genomes_project 8 81476092 81478990 + Adgrl1 protein_coding retained_intron MGP_AJ_T0089701.1 MGP_AJ_G0033824.1 mouse_genomes_project 8 81477648 81479323 + Adgrl1 protein_coding retained_intron MGP_AJ_T0089702.1 MGP_AJ_G0033824.1 mouse_genomes_project 8 81479149 81480360 + MGP_AJ_P0089702 Adgrl1 protein_coding protein_coding MGP_AJ_T0010973.1 MGP_AJ_G0009095.1 mouse_genomes_project 8 70200674 70200799 + Gm26237 miRNA miRNA MGP_AJ_T0088382.1 MGP_AJ_G0033394.1 mouse_genomes_project 8 16053895 16056148 + MGP_AJ_P0088382 Spag11b protein_coding protein_coding MGP_AJ_T0088383.1 MGP_AJ_G0033394.1 mouse_genomes_project 8 16053934 16055887 + MGP_AJ_P0088383 Spag11b protein_coding protein_coding MGP_AJ_T0009109.1 MGP_AJ_G0007324.1 mouse_genomes_project 8 54017293 54018631 + lincRNA lincRNA MGP_AJ_T0088379.1 MGP_AJ_G0033391.1 mouse_genomes_project 8 15969766 15982888 - MGP_AJ_P0088379 Defb39 protein_coding protein_coding MGP_AJ_T0088873.1 MGP_AJ_G0033570.1 mouse_genomes_project 8 43810504 43887290 + MGP_AJ_P0088873 Acsl1 protein_coding protein_coding MGP_AJ_T0088874.1 MGP_AJ_G0033570.1 mouse_genomes_project 8 43810562 43867883 + Acsl1 protein_coding retained_intron MGP_AJ_T0088875.1 MGP_AJ_G0033570.1 mouse_genomes_project 8 43810640 43862644 + MGP_AJ_P0088875 Acsl1 protein_coding protein_coding MGP_AJ_T0088876.1 MGP_AJ_G0033570.1 mouse_genomes_project 8 43842234 43886820 + MGP_AJ_P0088876 Acsl1 protein_coding protein_coding MGP_AJ_T0088877.1 MGP_AJ_G0033570.1 mouse_genomes_project 8 43842234 43856965 + MGP_AJ_P0088877 Acsl1 protein_coding protein_coding MGP_AJ_T0088878.1 MGP_AJ_G0033570.1 mouse_genomes_project 8 43844090 43885719 + MGP_AJ_P0088878 Acsl1 protein_coding protein_coding MGP_AJ_T0088879.1 MGP_AJ_G0033570.1 mouse_genomes_project 8 43878024 43879891 + Acsl1 protein_coding retained_intron MGP_AJ_T0088880.1 MGP_AJ_G0033570.1 mouse_genomes_project 8 43882302 43885694 + MGP_AJ_P0088880 Acsl1 protein_coding protein_coding MGP_AJ_T0088381.1 MGP_AJ_G0033393.1 mouse_genomes_project 8 16036095 16038885 + MGP_AJ_P0088381 Defb34 protein_coding protein_coding MGP_AJ_T0088125.1 MGP_AJ_G0033312.1 mouse_genomes_project 8 1192332 1193959 - MGP_AJ_P0088125 Ctxn1 protein_coding protein_coding MGP_AJ_T0089893.1 MGP_AJ_G0033876.1 mouse_genomes_project 8 82624494 82630111 - Wdr83 protein_coding retained_intron MGP_AJ_T0089894.1 MGP_AJ_G0033876.1 mouse_genomes_project 8 82624494 82630040 - Wdr83 protein_coding retained_intron MGP_AJ_T0089895.1 MGP_AJ_G0033876.1 mouse_genomes_project 8 82624494 82630154 - MGP_AJ_P0089895 Wdr83 protein_coding protein_coding MGP_AJ_T0089896.1 MGP_AJ_G0033876.1 mouse_genomes_project 8 82624495 82629323 - Wdr83 protein_coding retained_intron MGP_AJ_T0089897.1 MGP_AJ_G0033876.1 mouse_genomes_project 8 82624496 82625567 - MGP_AJ_P0089897 Wdr83 protein_coding protein_coding MGP_AJ_T0089898.1 MGP_AJ_G0033876.1 mouse_genomes_project 8 82624497 82625751 - Wdr83 protein_coding retained_intron MGP_AJ_T0089899.1 MGP_AJ_G0033876.1 mouse_genomes_project 8 82624511 82630711 - Wdr83 protein_coding retained_intron MGP_AJ_T0089900.1 MGP_AJ_G0033876.1 mouse_genomes_project 8 82625287 82630081 - MGP_AJ_P0089900 Wdr83 protein_coding protein_coding MGP_AJ_T0089901.1 MGP_AJ_G0033876.1 mouse_genomes_project 8 82625583 82630082 - MGP_AJ_P0089901 Wdr83 protein_coding nonsense_mediated_decay MGP_AJ_T0089902.1 MGP_AJ_G0033876.1 mouse_genomes_project 8 82629102 82630077 - Wdr83 protein_coding retained_intron MGP_AJ_T0002331.1 MGP_AJ_G0002242.1 mouse_genomes_project 8 73059908 73060315 - TEC TEC MGP_AJ_T0089133.1 MGP_AJ_G0033647.1 mouse_genomes_project 8 66440794 66465840 + MGP_AJ_P0089133 Atp6v1b2 protein_coding protein_coding MGP_AJ_T0089134.1 MGP_AJ_G0033647.1 mouse_genomes_project 8 66440916 66459502 + Atp6v1b2 protein_coding retained_intron MGP_AJ_T0089135.1 MGP_AJ_G0033647.1 mouse_genomes_project 8 66440935 66454392 + Atp6v1b2 protein_coding retained_intron MGP_AJ_T0089136.1 MGP_AJ_G0033647.1 mouse_genomes_project 8 66440937 66448735 + Atp6v1b2 protein_coding retained_intron MGP_AJ_T0089137.1 MGP_AJ_G0033647.1 mouse_genomes_project 8 66454355 66455206 + Atp6v1b2 protein_coding retained_intron MGP_AJ_T0089138.1 MGP_AJ_G0033647.1 mouse_genomes_project 8 66455270 66460469 + Atp6v1b2 protein_coding retained_intron MGP_AJ_T0088612.1 MGP_AJ_G0033482.1 mouse_genomes_project 8 24342657 24347458 - MGP_AJ_P0088612 Brf2 protein_coding protein_coding MGP_AJ_T0088923.1 MGP_AJ_G0033587.1 mouse_genomes_project 8 45459206 45502398 + MGP_AJ_P0088923 Dctd protein_coding protein_coding MGP_AJ_T0088924.1 MGP_AJ_G0033587.1 mouse_genomes_project 8 45471051 45503454 + MGP_AJ_P0088924 Dctd protein_coding protein_coding MGP_AJ_T0088925.1 MGP_AJ_G0033587.1 mouse_genomes_project 8 45471106 45503452 + MGP_AJ_P0088925 Dctd protein_coding protein_coding MGP_AJ_T0088926.1 MGP_AJ_G0033587.1 mouse_genomes_project 8 45471255 45503452 + MGP_AJ_P0088926 Dctd protein_coding nonsense_mediated_decay MGP_AJ_T0088927.1 MGP_AJ_G0033587.1 mouse_genomes_project 8 45471258 45499480 + Dctd protein_coding retained_intron MGP_AJ_T0088928.1 MGP_AJ_G0033587.1 mouse_genomes_project 8 45471282 45500380 + Dctd protein_coding processed_transcript MGP_AJ_T0088929.1 MGP_AJ_G0033587.1 mouse_genomes_project 8 45471304 45515007 + MGP_AJ_P0088929 Dctd protein_coding protein_coding MGP_AJ_T0090041.1 MGP_AJ_G0033922.1 mouse_genomes_project 8 90563875 90603681 + MGP_AJ_P0090041 Slc6a2 protein_coding protein_coding MGP_AJ_T0090042.1 MGP_AJ_G0033922.1 mouse_genomes_project 8 90564844 90606593 + MGP_AJ_P0090042 Slc6a2 protein_coding protein_coding MGP_AJ_T0101496.1 MGP_AJ_G0039462.1 mouse_genomes_project 8 64587022 64587172 - Gm24677 snoRNA snoRNA MGP_AJ_T0088288.1 MGP_AJ_G0033362.1 mouse_genomes_project 8 10426403 10455548 - MGP_AJ_P0088288 Gas6 protein_coding protein_coding MGP_AJ_T0090733.1 MGP_AJ_G0034175.1 mouse_genomes_project 8 118185178 118232146 + MGP_AJ_P0090733 Usp10 protein_coding protein_coding MGP_AJ_T0090734.1 MGP_AJ_G0034175.1 mouse_genomes_project 8 118185632 118232151 + MGP_AJ_P0090734 Usp10 protein_coding protein_coding MGP_AJ_T0090735.1 MGP_AJ_G0034175.1 mouse_genomes_project 8 118185651 118227218 + Usp10 protein_coding processed_transcript MGP_AJ_T0090736.1 MGP_AJ_G0034175.1 mouse_genomes_project 8 118185675 118226525 + MGP_AJ_P0090736 Usp10 protein_coding protein_coding MGP_AJ_T0090737.1 MGP_AJ_G0034175.1 mouse_genomes_project 8 118218666 118223307 + Usp10 protein_coding processed_transcript MGP_AJ_T0090738.1 MGP_AJ_G0034175.1 mouse_genomes_project 8 118222891 118227882 + Usp10 protein_coding retained_intron MGP_AJ_T0090739.1 MGP_AJ_G0034175.1 mouse_genomes_project 8 118223002 118226994 + Usp10 protein_coding retained_intron MGP_AJ_T0090740.1 MGP_AJ_G0034175.1 mouse_genomes_project 8 118226553 118229908 + Usp10 protein_coding retained_intron MGP_AJ_T0090741.1 MGP_AJ_G0034175.1 mouse_genomes_project 8 118227242 118229402 + Usp10 protein_coding retained_intron MGP_AJ_T0090742.1 MGP_AJ_G0034175.1 mouse_genomes_project 8 118227865 118231460 + MGP_AJ_P0090742 Usp10 protein_coding protein_coding MGP_AJ_T0090743.1 MGP_AJ_G0034175.1 mouse_genomes_project 8 118230796 118232148 + Usp10 protein_coding processed_transcript MGP_AJ_T0005352.1 MGP_AJ_G0004535.1 mouse_genomes_project 8 43486729 43490217 + Gm15634 antisense antisense MGP_AJ_T0089720.1 MGP_AJ_G0033832.1 mouse_genomes_project 8 81569871 81584226 - MGP_AJ_P0089720 Il27ra protein_coding protein_coding MGP_AJ_T0089867.1 MGP_AJ_G0033867.1 mouse_genomes_project 8 82524614 82526455 - MGP_AJ_P0089867 Junb protein_coding protein_coding MGP_AJ_T0088320.1 MGP_AJ_G0033375.1 mouse_genomes_project 8 11061539 11063669 + MGP_AJ_P0088320 protein_coding protein_coding MGP_AJ_T0101518.1 MGP_AJ_G0039484.1 mouse_genomes_project 8 108935753 108935829 - Gm22193 snoRNA snoRNA MGP_AJ_T0089049.1 MGP_AJ_G0033621.1 mouse_genomes_project 8 60237111 60638063 + MGP_AJ_P0089049 Spock3 protein_coding protein_coding MGP_AJ_T0089050.1 MGP_AJ_G0033621.1 mouse_genomes_project 8 60237334 60638071 + MGP_AJ_P0089050 Spock3 protein_coding protein_coding MGP_AJ_T0089051.1 MGP_AJ_G0033621.1 mouse_genomes_project 8 60237463 60441676 + Spock3 protein_coding retained_intron MGP_AJ_T0089052.1 MGP_AJ_G0033621.1 mouse_genomes_project 8 60237463 60638314 + MGP_AJ_P0089052 Spock3 protein_coding protein_coding MGP_AJ_T0089053.1 MGP_AJ_G0033621.1 mouse_genomes_project 8 60237902 60638305 + MGP_AJ_P0089053 Spock3 protein_coding protein_coding MGP_AJ_T0089054.1 MGP_AJ_G0033621.1 mouse_genomes_project 8 60238027 60253484 + Spock3 protein_coding processed_transcript MGP_AJ_T0089592.1 MGP_AJ_G0033788.1 mouse_genomes_project 8 75966069 75970175 - MGP_AJ_P0089592 protein_coding protein_coding MGP_AJ_T0089733.1 MGP_AJ_G0033840.1 mouse_genomes_project 8 81690279 81704245 + MGP_AJ_P0089733 4930432K21Rik protein_coding protein_coding MGP_AJ_T0089734.1 MGP_AJ_G0033840.1 mouse_genomes_project 8 81690407 81714621 + MGP_AJ_P0089734 4930432K21Rik protein_coding protein_coding MGP_AJ_T0089735.1 MGP_AJ_G0033840.1 mouse_genomes_project 8 81690500 81714620 + MGP_AJ_P0089735 4930432K21Rik protein_coding protein_coding MGP_AJ_T0091047.1 MGP_AJ_G0034255.1 mouse_genomes_project 8 123055260 123105732 - MGP_AJ_P0091047 Ttc13 protein_coding unknown_likely_coding MGP_AJ_T0091048.1 MGP_AJ_G0034255.1 mouse_genomes_project 8 123055270 123105753 - MGP_AJ_P0091048 Ttc13 protein_coding protein_coding MGP_AJ_T0091049.1 MGP_AJ_G0034255.1 mouse_genomes_project 8 123055270 123105734 - MGP_AJ_P0091049 Ttc13 protein_coding protein_coding MGP_AJ_T0091050.1 MGP_AJ_G0034255.1 mouse_genomes_project 8 123055270 123105742 - MGP_AJ_P0091050 Ttc13 protein_coding protein_coding MGP_AJ_T0091051.1 MGP_AJ_G0034255.1 mouse_genomes_project 8 123057383 123058154 - Ttc13 protein_coding retained_intron MGP_AJ_T0091052.1 MGP_AJ_G0034255.1 mouse_genomes_project 8 123057889 123059415 - Ttc13 protein_coding retained_intron MGP_AJ_T0091053.1 MGP_AJ_G0034255.1 mouse_genomes_project 8 123058033 123062883 - Ttc13 protein_coding retained_intron MGP_AJ_T0091054.1 MGP_AJ_G0034255.1 mouse_genomes_project 8 123062969 123066461 - Ttc13 protein_coding retained_intron MGP_AJ_T0091055.1 MGP_AJ_G0034255.1 mouse_genomes_project 8 123063476 123066053 - Ttc13 protein_coding retained_intron MGP_AJ_T0091056.1 MGP_AJ_G0034255.1 mouse_genomes_project 8 123091429 123105751 - Ttc13 protein_coding retained_intron MGP_AJ_T0088090.1 MGP_AJ_G0033305.1 mouse_genomes_project 8 859281 865106 - MGP_AJ_P0088090 Cd209c protein_coding protein_coding MGP_AJ_T0088091.1 MGP_AJ_G0033305.1 mouse_genomes_project 8 859353 867051 - MGP_AJ_P0088091 Cd209c protein_coding nonsense_mediated_decay MGP_AJ_T0090447.1 MGP_AJ_G0034075.1 mouse_genomes_project 8 105080096 105084353 + MGP_AJ_P0090447 Nip7 protein_coding protein_coding MGP_AJ_T0090448.1 MGP_AJ_G0034075.1 mouse_genomes_project 8 105080096 105084353 + MGP_AJ_P0090448 Nip7 protein_coding protein_coding MGP_AJ_T0088921.1 MGP_AJ_G0033585.1 mouse_genomes_project 8 45180541 45183358 + MGP_AJ_P0088921 Cldn22 protein_coding protein_coding MGP_AJ_T0090885.1 MGP_AJ_G0034207.1 mouse_genomes_project 8 120791120 120801078 - MGP_AJ_P0090885 Rnf166 protein_coding protein_coding MGP_AJ_T0090886.1 MGP_AJ_G0034207.1 mouse_genomes_project 8 120791834 120793200 - Rnf166 protein_coding retained_intron MGP_AJ_T0090887.1 MGP_AJ_G0034207.1 mouse_genomes_project 8 120792981 120800702 - Rnf166 protein_coding processed_transcript MGP_AJ_T0089203.1 MGP_AJ_G0033672.1 mouse_genomes_project 8 67479442 67507475 - MGP_AJ_P0089203 Ncan protein_coding protein_coding MGP_AJ_T0088840.1 MGP_AJ_G0033562.1 mouse_genomes_project 8 43294041 43315934 - MGP_AJ_P0088840 1700029J07Rik protein_coding protein_coding MGP_AJ_T0088841.1 MGP_AJ_G0033562.1 mouse_genomes_project 8 43294043 43315934 - MGP_AJ_P0088841 1700029J07Rik protein_coding protein_coding MGP_AJ_T0011024.1 MGP_AJ_G0009146.1 mouse_genomes_project 8 121449892 121449957 + Mir7079 miRNA miRNA MGP_AJ_T0090913.1 MGP_AJ_G0034216.1 mouse_genomes_project 8 120958413 121030797 - MGP_AJ_P0090913 Cbfa2t3 protein_coding protein_coding MGP_AJ_T0090914.1 MGP_AJ_G0034216.1 mouse_genomes_project 8 120959138 121008834 - MGP_AJ_P0090914 Cbfa2t3 protein_coding protein_coding MGP_AJ_T0090915.1 MGP_AJ_G0034216.1 mouse_genomes_project 8 120959613 121008937 - MGP_AJ_P0090915 Cbfa2t3 protein_coding protein_coding MGP_AJ_T0090916.1 MGP_AJ_G0034216.1 mouse_genomes_project 8 120969631 121009456 - MGP_AJ_P0090916 Cbfa2t3 protein_coding protein_coding MGP_AJ_T0090917.1 MGP_AJ_G0034216.1 mouse_genomes_project 8 120969635 120977152 - Cbfa2t3 protein_coding processed_transcript MGP_AJ_T0090918.1 MGP_AJ_G0034216.1 mouse_genomes_project 8 120973621 121008873 - Cbfa2t3 protein_coding processed_transcript MGP_AJ_T0090919.1 MGP_AJ_G0034216.1 mouse_genomes_project 8 120980708 121030590 - Cbfa2t3 protein_coding retained_intron MGP_AJ_T0090675.1 MGP_AJ_G0034150.1 mouse_genomes_project 8 115238573 115322028 - MGP_AJ_P0090675 Pkd1l2 protein_coding protein_coding MGP_AJ_T0090676.1 MGP_AJ_G0034150.1 mouse_genomes_project 8 115238573 115322028 - MGP_AJ_P0090676 Pkd1l2 protein_coding protein_coding MGP_AJ_T0090677.1 MGP_AJ_G0034150.1 mouse_genomes_project 8 115247217 115261530 - Pkd1l2 protein_coding retained_intron MGP_AJ_T0090678.1 MGP_AJ_G0034150.1 mouse_genomes_project 8 115260984 115267174 - Pkd1l2 protein_coding retained_intron MGP_AJ_T0101524.1 MGP_AJ_G0039490.1 mouse_genomes_project 8 119986819 119986898 - Gm23299 snoRNA snoRNA MGP_AJ_T0100244.1 MGP_AJ_G0038210.1 mouse_genomes_project 8 122739559 122739645 + Gm24459 snRNA snRNA MGP_AJ_T0089736.1 MGP_AJ_G0033841.1 mouse_genomes_project 8 81715766 81719545 - MGP_AJ_P0089736 Nanos3 protein_coding protein_coding MGP_AJ_T0088190.1 MGP_AJ_G0033338.1 mouse_genomes_project 8 8581369 8606956 - MGP_AJ_P0088190 1700016D06Rik protein_coding protein_coding MGP_AJ_T0088191.1 MGP_AJ_G0033338.1 mouse_genomes_project 8 8581923 8590500 - 1700016D06Rik protein_coding processed_transcript MGP_AJ_T0088192.1 MGP_AJ_G0033338.1 mouse_genomes_project 8 8581924 8629287 - MGP_AJ_P0088192 1700016D06Rik protein_coding protein_coding MGP_AJ_T0088193.1 MGP_AJ_G0033338.1 mouse_genomes_project 8 8581925 8592369 - MGP_AJ_P0088193 1700016D06Rik protein_coding protein_coding MGP_AJ_T0089189.1 MGP_AJ_G0033665.1 mouse_genomes_project 8 67275416 67283922 - MGP_AJ_P0089189 Ndufa13 protein_coding protein_coding MGP_AJ_T0090441.1 MGP_AJ_G0034073.1 mouse_genomes_project 8 105067978 105070464 - MGP_AJ_P0090441 Pdf protein_coding nonsense_mediated_decay MGP_AJ_T0090444.1 MGP_AJ_G0034073.1 mouse_genomes_project 8 105069797 105071827 - MGP_AJ_P0090444 Pdf protein_coding protein_coding MGP_AJ_T0090258.1 MGP_AJ_G0033999.1 mouse_genomes_project 8 102662085 102669921 + MGP_AJ_P0090258 Ces2a protein_coding protein_coding MGP_AJ_T0090259.1 MGP_AJ_G0033999.1 mouse_genomes_project 8 102662100 102669925 + MGP_AJ_P0090259 Ces2a protein_coding protein_coding MGP_AJ_T0090260.1 MGP_AJ_G0033999.1 mouse_genomes_project 8 102662110 102665815 + Ces2a protein_coding processed_transcript MGP_AJ_T0090261.1 MGP_AJ_G0033999.1 mouse_genomes_project 8 102667897 102669535 + Ces2a protein_coding retained_intron MGP_AJ_T0090130.1 MGP_AJ_G0033953.1 mouse_genomes_project 8 92506729 92526727 - MGP_AJ_P0090130 Ciapin1 protein_coding protein_coding MGP_AJ_T0090131.1 MGP_AJ_G0033953.1 mouse_genomes_project 8 92508737 92526799 - MGP_AJ_P0090131 Ciapin1 protein_coding protein_coding MGP_AJ_T0090132.1 MGP_AJ_G0033953.1 mouse_genomes_project 8 92511850 92513112 - Ciapin1 protein_coding retained_intron MGP_AJ_T0090133.1 MGP_AJ_G0033953.1 mouse_genomes_project 8 92511936 92515632 - Ciapin1 protein_coding processed_transcript MGP_AJ_T0090134.1 MGP_AJ_G0033953.1 mouse_genomes_project 8 92512626 92521131 - MGP_AJ_P0090134 Ciapin1 protein_coding protein_coding MGP_AJ_T0090135.1 MGP_AJ_G0033953.1 mouse_genomes_project 8 92513554 92515630 - Ciapin1 protein_coding retained_intron MGP_AJ_T0090136.1 MGP_AJ_G0033953.1 mouse_genomes_project 8 92514137 92520412 - Ciapin1 protein_coding processed_transcript MGP_AJ_T0090137.1 MGP_AJ_G0033953.1 mouse_genomes_project 8 92516985 92526706 - MGP_AJ_P0090137 Ciapin1 protein_coding protein_coding MGP_AJ_T0090138.1 MGP_AJ_G0033953.1 mouse_genomes_project 8 92520363 92526702 - Ciapin1 protein_coding processed_transcript MGP_AJ_T0090139.1 MGP_AJ_G0033953.1 mouse_genomes_project 8 92521124 92526483 - Ciapin1 protein_coding processed_transcript MGP_AJ_T0090267.1 MGP_AJ_G0034002.1 mouse_genomes_project 8 102903641 102912054 + MGP_AJ_P0090267 Ces2e protein_coding protein_coding MGP_AJ_T0090268.1 MGP_AJ_G0034002.1 mouse_genomes_project 8 102903641 102912054 + MGP_AJ_P0090268 Ces2e protein_coding protein_coding MGP_AJ_T0088397.1 MGP_AJ_G0033407.1 mouse_genomes_project 8 18884601 18887258 - MGP_AJ_P0088397 protein_coding protein_coding MGP_AJ_T0089578.1 MGP_AJ_G0033784.1 mouse_genomes_project 8 75056323 75070177 - MGP_AJ_P0089578 Tmem184c protein_coding protein_coding MGP_AJ_T0089579.1 MGP_AJ_G0033784.1 mouse_genomes_project 8 75063203 75070222 - MGP_AJ_P0089579 Tmem184c protein_coding protein_coding MGP_AJ_T0089580.1 MGP_AJ_G0033784.1 mouse_genomes_project 8 75066698 75070192 - MGP_AJ_P0089580 Tmem184c protein_coding protein_coding MGP_AJ_T0088077.1 MGP_AJ_G0033297.1 mouse_genomes_project 8 582037 584667 + MGP_AJ_P0088077 Mcemp1 protein_coding protein_coding MGP_AJ_T0010957.1 MGP_AJ_G0009079.1 mouse_genomes_project 8 23428788 23428869 + Gm44299 miRNA miRNA MGP_AJ_T0088401.1 MGP_AJ_G0033411.1 mouse_genomes_project 8 18970010 18985532 + MGP_AJ_P0088401 Defb1 protein_coding protein_coding MGP_AJ_T0011003.1 MGP_AJ_G0009125.1 mouse_genomes_project 8 103286120 103286217 - Mir328 miRNA miRNA MGP_AJ_T0090673.1 MGP_AJ_G0034149.1 mouse_genomes_project 8 115224044 115236321 - MGP_AJ_P0090673 Gcsh protein_coding unknown_likely_coding MGP_AJ_T0090674.1 MGP_AJ_G0034149.1 mouse_genomes_project 8 115225915 115234262 - Gcsh protein_coding processed_transcript MGP_AJ_T0088331.1 MGP_AJ_G0033378.1 mouse_genomes_project 8 11865868 11888196 + MGP_AJ_P0088331 Cln8 protein_coding protein_coding MGP_AJ_T0088332.1 MGP_AJ_G0033378.1 mouse_genomes_project 8 11881522 11888539 + MGP_AJ_P0088332 Cln8 protein_coding protein_coding MGP_AJ_T0088333.1 MGP_AJ_G0033378.1 mouse_genomes_project 8 11881588 11895196 + MGP_AJ_P0088333 Cln8 protein_coding protein_coding MGP_AJ_T0088334.1 MGP_AJ_G0033378.1 mouse_genomes_project 8 11882481 11888266 + MGP_AJ_P0088334 Cln8 protein_coding protein_coding MGP_AJ_T0088335.1 MGP_AJ_G0033378.1 mouse_genomes_project 8 11882836 11888399 + MGP_AJ_P0088335 Cln8 protein_coding protein_coding MGP_AJ_T0002333.1 MGP_AJ_G0002244.1 mouse_genomes_project 8 82954190 82954830 + TEC TEC MGP_AJ_T0002334.1 MGP_AJ_G0002244.1 mouse_genomes_project 8 82954190 82954822 + TEC TEC MGP_AJ_T0088408.1 MGP_AJ_G0033418.1 mouse_genomes_project 8 19126933 19127152 + MGP_AJ_P0088408 Defb35 protein_coding protein_coding MGP_AJ_T0009153.1 MGP_AJ_G0007358.1 mouse_genomes_project 8 85593319 85672898 - lincRNA lincRNA MGP_AJ_T0009133.1 MGP_AJ_G0007345.1 mouse_genomes_project 8 84422563 84423442 + 2010110E17Rik lincRNA lincRNA MGP_AJ_T0089622.1 MGP_AJ_G0033800.1 mouse_genomes_project 8 78098156 78175221 + MGP_AJ_P0089622 Frem3 protein_coding protein_coding MGP_AJ_T0009096.1 MGP_AJ_G0007313.1 mouse_genomes_project 8 30960000 30961274 - 1700104B16Rik lincRNA lincRNA MGP_AJ_T0009097.1 MGP_AJ_G0007313.1 mouse_genomes_project 8 30960000 30961279 - 1700104B16Rik lincRNA lincRNA MGP_AJ_T0099100.1 MGP_AJ_G0037072.1 mouse_genomes_project 8 83539137 83541537 + Hm629797 sense_intronic sense_intronic MGP_AJ_T0090220.1 MGP_AJ_G0033982.1 mouse_genomes_project 8 102059517 102108037 + MGP_AJ_P0090220 Bean1 protein_coding protein_coding MGP_AJ_T0090221.1 MGP_AJ_G0033982.1 mouse_genomes_project 8 102059517 102108037 + MGP_AJ_P0090221 Bean1 protein_coding protein_coding MGP_AJ_T0090222.1 MGP_AJ_G0033982.1 mouse_genomes_project 8 102059517 102108037 + MGP_AJ_P0090222 Bean1 protein_coding protein_coding MGP_AJ_T0090223.1 MGP_AJ_G0033982.1 mouse_genomes_project 8 102059517 102108037 + MGP_AJ_P0090223 Bean1 protein_coding protein_coding MGP_AJ_T0088187.1 MGP_AJ_G0033336.1 mouse_genomes_project 8 8477151 8483891 + MGP_AJ_P0088187 Ing1 protein_coding protein_coding MGP_AJ_T0090122.1 MGP_AJ_G0033949.1 mouse_genomes_project 8 92357883 92379995 - MGP_AJ_P0090122 Pllp protein_coding protein_coding MGP_AJ_T0100228.1 MGP_AJ_G0038194.1 mouse_genomes_project 8 96400698 96400824 - Gm23494 snRNA snRNA MGP_AJ_T0089664.1 MGP_AJ_G0033817.1 mouse_genomes_project 8 81099683 81122325 - MGP_AJ_P0089664 Tecr protein_coding protein_coding MGP_AJ_T0089665.1 MGP_AJ_G0033817.1 mouse_genomes_project 8 81099683 81122325 - MGP_AJ_P0089665 Tecr protein_coding protein_coding MGP_AJ_T0089666.1 MGP_AJ_G0033817.1 mouse_genomes_project 8 81099683 81122263 - MGP_AJ_P0089666 Tecr protein_coding protein_coding MGP_AJ_T0090729.1 MGP_AJ_G0034172.1 mouse_genomes_project 8 118035889 118053747 - MGP_AJ_P0090729 Tldc1 protein_coding protein_coding MGP_AJ_T0090698.1 MGP_AJ_G0034159.1 mouse_genomes_project 8 117606659 117611051 + MGP_AJ_P0090698 Hsbp1 protein_coding protein_coding MGP_AJ_T0088702.1 MGP_AJ_G0033523.1 mouse_genomes_project 8 33501505 33534945 - MGP_AJ_P0088702 Lonrf1 protein_coding protein_coding MGP_AJ_T0098482.1 MGP_AJ_G0036466.1 mouse_genomes_project 8 101684175 101688368 - pseudogene pseudogene MGP_AJ_T0009154.1 MGP_AJ_G0007359.1 mouse_genomes_project 8 85729672 85730148 + 9430002A10Rik lincRNA lincRNA MGP_AJ_T0009155.1 MGP_AJ_G0007359.1 mouse_genomes_project 8 85729672 85730142 + 9430002A10Rik lincRNA lincRNA MGP_AJ_T0005395.1 MGP_AJ_G0004572.1 mouse_genomes_project 8 118311633 118320724 - Gm15684 antisense antisense MGP_AJ_T0090338.1 MGP_AJ_G0034027.1 mouse_genomes_project 8 103447631 103451665 - MGP_AJ_P0090338 Tppp3 protein_coding protein_coding MGP_AJ_T0090339.1 MGP_AJ_G0034027.1 mouse_genomes_project 8 103447807 103449549 - MGP_AJ_P0090339 Tppp3 protein_coding protein_coding MGP_AJ_T0090340.1 MGP_AJ_G0034027.1 mouse_genomes_project 8 103447821 103448801 - MGP_AJ_P0090340 Tppp3 protein_coding protein_coding MGP_AJ_T0090995.1 MGP_AJ_G0034236.1 mouse_genomes_project 8 121797192 121817970 + MGP_AJ_P0090995 Def8 protein_coding protein_coding MGP_AJ_T0090996.1 MGP_AJ_G0034236.1 mouse_genomes_project 8 121797192 121815215 + MGP_AJ_P0090996 Def8 protein_coding protein_coding MGP_AJ_T0090997.1 MGP_AJ_G0034236.1 mouse_genomes_project 8 121797192 121817970 + MGP_AJ_P0090997 Def8 protein_coding protein_coding MGP_AJ_T0090998.1 MGP_AJ_G0034236.1 mouse_genomes_project 8 121797202 121807326 + MGP_AJ_P0090998 Def8 protein_coding protein_coding MGP_AJ_T0090999.1 MGP_AJ_G0034236.1 mouse_genomes_project 8 121797211 121817970 + MGP_AJ_P0090999 Def8 protein_coding protein_coding MGP_AJ_T0091000.1 MGP_AJ_G0034236.1 mouse_genomes_project 8 121797214 121807262 + MGP_AJ_P0091000 Def8 protein_coding protein_coding MGP_AJ_T0091001.1 MGP_AJ_G0034236.1 mouse_genomes_project 8 121797218 121810030 + MGP_AJ_P0091001 Def8 protein_coding protein_coding MGP_AJ_T0091002.1 MGP_AJ_G0034236.1 mouse_genomes_project 8 121797514 121817962 + MGP_AJ_P0091002 Def8 protein_coding protein_coding MGP_AJ_T0088413.1 MGP_AJ_G0033422.1 mouse_genomes_project 8 19182216 19253399 - MGP_AJ_P0088413 Atp7b protein_coding protein_coding MGP_AJ_T0088414.1 MGP_AJ_G0033422.1 mouse_genomes_project 8 19184082 19253113 - MGP_AJ_P0088414 Atp7b protein_coding protein_coding MGP_AJ_T0088336.1 MGP_AJ_G0033379.1 mouse_genomes_project 8 11905276 11998171 + MGP_AJ_P0088336 Arhgef10 protein_coding protein_coding MGP_AJ_T0088337.1 MGP_AJ_G0033379.1 mouse_genomes_project 8 11905330 11921899 + Arhgef10 protein_coding retained_intron MGP_AJ_T0088338.1 MGP_AJ_G0033379.1 mouse_genomes_project 8 11905337 11957314 + MGP_AJ_P0088338 Arhgef10 protein_coding protein_coding MGP_AJ_T0088339.1 MGP_AJ_G0033379.1 mouse_genomes_project 8 11905351 11998171 + MGP_AJ_P0088339 Arhgef10 protein_coding protein_coding MGP_AJ_T0088340.1 MGP_AJ_G0033379.1 mouse_genomes_project 8 11942122 11998168 + MGP_AJ_P0088340 Arhgef10 protein_coding protein_coding MGP_AJ_T0088341.1 MGP_AJ_G0033379.1 mouse_genomes_project 8 11987555 11988316 + Arhgef10 protein_coding processed_transcript MGP_AJ_T0088342.1 MGP_AJ_G0033379.1 mouse_genomes_project 8 11993279 11998160 + Arhgef10 protein_coding processed_transcript MGP_AJ_T0089239.1 MGP_AJ_G0033680.1 mouse_genomes_project 8 67626958 67659221 + MGP_AJ_P0089239 Sugp2 protein_coding protein_coding MGP_AJ_T0089240.1 MGP_AJ_G0033680.1 mouse_genomes_project 8 67627031 67635137 + MGP_AJ_P0089240 Sugp2 protein_coding protein_coding MGP_AJ_T0089241.1 MGP_AJ_G0033680.1 mouse_genomes_project 8 67627037 67648158 + Sugp2 protein_coding retained_intron MGP_AJ_T0089242.1 MGP_AJ_G0033680.1 mouse_genomes_project 8 67628873 67635389 + MGP_AJ_P0089242 Sugp2 protein_coding protein_coding MGP_AJ_T0089243.1 MGP_AJ_G0033680.1 mouse_genomes_project 8 67636069 67651665 + Sugp2 protein_coding retained_intron MGP_AJ_T0089244.1 MGP_AJ_G0033680.1 mouse_genomes_project 8 67641483 67645263 + Sugp2 protein_coding retained_intron MGP_AJ_T0089245.1 MGP_AJ_G0033680.1 mouse_genomes_project 8 67645458 67673514 + Sugp2 protein_coding processed_transcript MGP_AJ_T0089246.1 MGP_AJ_G0033680.1 mouse_genomes_project 8 67650870 67652798 + Sugp2 protein_coding retained_intron MGP_AJ_T0089247.1 MGP_AJ_G0033680.1 mouse_genomes_project 8 67653146 67656500 + Sugp2 protein_coding processed_transcript MGP_AJ_T0089248.1 MGP_AJ_G0033680.1 mouse_genomes_project 8 67653836 67656500 + Sugp2 protein_coding retained_intron MGP_AJ_T0089249.1 MGP_AJ_G0033680.1 mouse_genomes_project 8 67667134 67673513 + Sugp2 protein_coding processed_transcript MGP_AJ_T0089593.1 MGP_AJ_G0033789.1 mouse_genomes_project 8 75970581 76199895 + MGP_AJ_P0089593 Slc10a7 protein_coding protein_coding MGP_AJ_T0090754.1 MGP_AJ_G0034178.1 mouse_genomes_project 8 118391660 118447321 + MGP_AJ_P0090754 6430548M08Rik protein_coding protein_coding MGP_AJ_T0090755.1 MGP_AJ_G0034178.1 mouse_genomes_project 8 118391660 118436605 + MGP_AJ_P0090755 6430548M08Rik protein_coding protein_coding MGP_AJ_T0090756.1 MGP_AJ_G0034178.1 mouse_genomes_project 8 118391661 118447319 + MGP_AJ_P0090756 6430548M08Rik protein_coding protein_coding MGP_AJ_T0090757.1 MGP_AJ_G0034178.1 mouse_genomes_project 8 118423588 118424644 + MGP_AJ_P0090757 6430548M08Rik protein_coding protein_coding MGP_AJ_T0090758.1 MGP_AJ_G0034178.1 mouse_genomes_project 8 118423829 118434576 + MGP_AJ_P0090758 6430548M08Rik protein_coding protein_coding MGP_AJ_T0090759.1 MGP_AJ_G0034178.1 mouse_genomes_project 8 118424054 118444903 + MGP_AJ_P0090759 6430548M08Rik protein_coding protein_coding MGP_AJ_T0090760.1 MGP_AJ_G0034178.1 mouse_genomes_project 8 118437878 118443401 + 6430548M08Rik protein_coding processed_transcript MGP_AJ_T0090254.1 MGP_AJ_G0033997.1 mouse_genomes_project 8 102560404 102563660 - MGP_AJ_P0090254 Rrad protein_coding protein_coding MGP_AJ_T0088646.1 MGP_AJ_G0033503.1 mouse_genomes_project 8 30741947 30781535 + MGP_AJ_P0088646 Tex15 protein_coding protein_coding MGP_AJ_T0088647.1 MGP_AJ_G0033503.1 mouse_genomes_project 8 30742531 30810175 + MGP_AJ_P0088647 Tex15 protein_coding nonsense_mediated_decay MGP_AJ_T0088648.1 MGP_AJ_G0033503.1 mouse_genomes_project 8 30742531 30798278 + MGP_AJ_P0088648 Tex15 protein_coding protein_coding MGP_AJ_T0088649.1 MGP_AJ_G0033503.1 mouse_genomes_project 8 30795263 30810175 + MGP_AJ_P0088649 Tex15 protein_coding protein_coding MGP_AJ_T0088286.1 MGP_AJ_G0033361.1 mouse_genomes_project 8 10396488 10422482 + MGP_AJ_P0088286 Tmem255b protein_coding protein_coding MGP_AJ_T0088287.1 MGP_AJ_G0033361.1 mouse_genomes_project 8 10396488 10422482 + MGP_AJ_P0088287 Tmem255b protein_coding protein_coding MGP_AJ_T0009093.1 MGP_AJ_G0007311.1 mouse_genomes_project 8 29264171 29271375 + Gm26578 lincRNA lincRNA MGP_AJ_T0089433.1 MGP_AJ_G0033737.1 mouse_genomes_project 8 69035573 69041619 - MGP_AJ_P0089433 Nxnl1 protein_coding protein_coding MGP_AJ_T0089434.1 MGP_AJ_G0033737.1 mouse_genomes_project 8 69035573 69041667 - MGP_AJ_P0089434 Nxnl1 protein_coding protein_coding MGP_AJ_T0100233.1 MGP_AJ_G0038199.1 mouse_genomes_project 8 105033126 105033236 - Gm22085 snRNA snRNA MGP_AJ_T0009172.1 MGP_AJ_G0007369.1 mouse_genomes_project 8 92107320 92118570 - 9330175E14Rik lincRNA lincRNA MGP_AJ_T0009173.1 MGP_AJ_G0007369.1 mouse_genomes_project 8 92114236 92118695 - 9330175E14Rik lincRNA lincRNA MGP_AJ_T0009174.1 MGP_AJ_G0007369.1 mouse_genomes_project 8 92117539 92119525 - 9330175E14Rik lincRNA lincRNA MGP_AJ_T0088273.1 MGP_AJ_G0033356.1 mouse_genomes_project 8 10210063 10240880 - MGP_AJ_P0088273 Dcun1d2 protein_coding protein_coding MGP_AJ_T0088274.1 MGP_AJ_G0033356.1 mouse_genomes_project 8 10210071 10241199 - MGP_AJ_P0088274 Dcun1d2 protein_coding protein_coding MGP_AJ_T0088275.1 MGP_AJ_G0033356.1 mouse_genomes_project 8 10210072 10240904 - MGP_AJ_P0088275 Dcun1d2 protein_coding nonsense_mediated_decay MGP_AJ_T0088276.1 MGP_AJ_G0033356.1 mouse_genomes_project 8 10210073 10241198 - Dcun1d2 protein_coding processed_transcript MGP_AJ_T0088277.1 MGP_AJ_G0033356.1 mouse_genomes_project 8 10214011 10240907 - MGP_AJ_P0088277 Dcun1d2 protein_coding protein_coding MGP_AJ_T0088278.1 MGP_AJ_G0033356.1 mouse_genomes_project 8 10231699 10234763 - Dcun1d2 protein_coding retained_intron MGP_AJ_T0090349.1 MGP_AJ_G0034033.1 mouse_genomes_project 8 103621727 103667873 + Ctcf protein_coding processed_transcript MGP_AJ_T0090350.1 MGP_AJ_G0034033.1 mouse_genomes_project 8 103621738 103669148 + MGP_AJ_P0090350 Ctcf protein_coding protein_coding MGP_AJ_T0090351.1 MGP_AJ_G0034033.1 mouse_genomes_project 8 103622094 103649394 + Ctcf protein_coding processed_transcript MGP_AJ_T0090352.1 MGP_AJ_G0034033.1 mouse_genomes_project 8 103622225 103649111 + Ctcf protein_coding processed_transcript MGP_AJ_T0090353.1 MGP_AJ_G0034033.1 mouse_genomes_project 8 103662185 103666843 + Ctcf protein_coding retained_intron MGP_AJ_T0090354.1 MGP_AJ_G0034033.1 mouse_genomes_project 8 103662185 103665790 + Ctcf protein_coding processed_transcript MGP_AJ_T0089074.1 MGP_AJ_G0033631.1 mouse_genomes_project 8 62358548 62360996 + MGP_AJ_P0089074 Gm10663 protein_coding protein_coding MGP_AJ_T0002340.1 MGP_AJ_G0002250.1 mouse_genomes_project 8 118386950 118388475 + TEC TEC MGP_AJ_T0089154.1 MGP_AJ_G0033654.1 mouse_genomes_project 8 67023977 67033226 + Zfp964 protein_coding retained_intron MGP_AJ_T0089155.1 MGP_AJ_G0033654.1 mouse_genomes_project 8 67023990 67037480 + MGP_AJ_P0089155 Zfp964 protein_coding protein_coding MGP_AJ_T0089156.1 MGP_AJ_G0033654.1 mouse_genomes_project 8 67029599 67034507 + MGP_AJ_P0089156 Zfp964 protein_coding protein_coding MGP_AJ_T0009176.1 MGP_AJ_G0007371.1 mouse_genomes_project 8 103141384 103147812 + Gm3830 lincRNA lincRNA MGP_AJ_T0011720.1 MGP_AJ_G0009842.1 mouse_genomes_project 8 62663168 62663311 + Gm25403 misc_RNA misc_RNA MGP_AJ_T0010960.1 MGP_AJ_G0009082.1 mouse_genomes_project 8 35624242 35624312 - Mir383 miRNA miRNA MGP_AJ_T0098744.1 MGP_AJ_G0036728.1 mouse_genomes_project 8 74079485 74079613 - Gm27355 rRNA rRNA MGP_AJ_T0088633.1 MGP_AJ_G0033494.1 mouse_genomes_project 8 28376838 28391450 + MGP_AJ_P0088633 Tti2 protein_coding protein_coding MGP_AJ_T0100243.1 MGP_AJ_G0038209.1 mouse_genomes_project 8 121325949 121326056 - Gm24445 snRNA snRNA MGP_AJ_T0088018.1 MGP_AJ_G0033283.1 mouse_genomes_project 8 260886 299083 + MGP_AJ_P0088018 A430078G23Rik protein_coding protein_coding MGP_AJ_T0090294.1 MGP_AJ_G0034011.1 mouse_genomes_project 8 103230795 103233311 - MGP_AJ_P0090294 B3gnt9 protein_coding protein_coding MGP_AJ_T0090295.1 MGP_AJ_G0034011.1 mouse_genomes_project 8 103230796 103233309 - MGP_AJ_P0090295 B3gnt9 protein_coding protein_coding MGP_AJ_T0090296.1 MGP_AJ_G0034011.1 mouse_genomes_project 8 103232479 103233309 - MGP_AJ_P0090296 B3gnt9 protein_coding protein_coding MGP_AJ_T0090303.1 MGP_AJ_G0034014.1 mouse_genomes_project 8 103247759 103253645 + MGP_AJ_P0090303 Hsf4 protein_coding nonsense_mediated_decay MGP_AJ_T0090304.1 MGP_AJ_G0034014.1 mouse_genomes_project 8 103247787 103253802 + MGP_AJ_P0090304 Hsf4 protein_coding nonsense_mediated_decay MGP_AJ_T0090305.1 MGP_AJ_G0034014.1 mouse_genomes_project 8 103247832 103253617 + MGP_AJ_P0090305 Hsf4 protein_coding protein_coding MGP_AJ_T0090306.1 MGP_AJ_G0034014.1 mouse_genomes_project 8 103247832 103253804 + MGP_AJ_P0090306 Hsf4 protein_coding protein_coding MGP_AJ_T0090307.1 MGP_AJ_G0034014.1 mouse_genomes_project 8 103247832 103253617 + MGP_AJ_P0090307 Hsf4 protein_coding protein_coding MGP_AJ_T0091022.1 MGP_AJ_G0034246.1 mouse_genomes_project 8 122336552 122366930 - MGP_AJ_P0091022 Abcb10 protein_coding protein_coding MGP_AJ_T0089213.1 MGP_AJ_G0033676.1 mouse_genomes_project 8 67539708 67555071 + MGP_AJ_P0089213 protein_coding protein_coding MGP_AJ_T0089214.1 MGP_AJ_G0033676.1 mouse_genomes_project 8 67539711 67555070 + MGP_AJ_P0089214 protein_coding protein_coding MGP_AJ_T0010963.1 MGP_AJ_G0009085.1 mouse_genomes_project 8 49447672 49447817 - Gm44387 miRNA miRNA MGP_AJ_T0089159.1 MGP_AJ_G0033657.1 mouse_genomes_project 8 67119492 67151870 - MGP_AJ_P0089159 Gm20422 protein_coding protein_coding MGP_AJ_T0089161.1 MGP_AJ_G0033657.1 mouse_genomes_project 8 67119814 67143705 - MGP_AJ_P0089161 Gm20422 protein_coding protein_coding MGP_AJ_T0016004.1 MGP_AJ_G0014099.1 mouse_genomes_project 8 69457180 69458624 + processed_pseudogene processed_pseudogene MGP_AJ_T0090618.1 MGP_AJ_G0034128.1 mouse_genomes_project 8 110036326 110058288 - MGP_AJ_P0090618 Chst5 protein_coding protein_coding MGP_AJ_T0098734.1 MGP_AJ_G0036718.1 mouse_genomes_project 8 2233555 2233674 - n-R5s94 rRNA rRNA MGP_AJ_T0100245.1 MGP_AJ_G0038211.1 mouse_genomes_project 8 125496806 125496979 + Gm22730 snRNA snRNA MGP_AJ_T0089335.1 MGP_AJ_G0033704.1 mouse_genomes_project 8 68123273 68127365 + MGP_AJ_P0089335 Gm3336 protein_coding protein_coding MGP_AJ_T0091042.1 MGP_AJ_G0034252.1 mouse_genomes_project 8 122939197 122952182 - MGP_AJ_P0091042 Agt protein_coding protein_coding MGP_AJ_T0005389.1 MGP_AJ_G0004566.1 mouse_genomes_project 8 112528865 112546803 - antisense antisense MGP_AJ_T0100204.1 MGP_AJ_G0038170.1 mouse_genomes_project 8 34653874 34653976 - Gm25126 snRNA snRNA MGP_AJ_T0016026.1 MGP_AJ_G0014121.1 mouse_genomes_project 8 93259021 93260462 + processed_pseudogene processed_pseudogene MGP_AJ_T0088937.1 MGP_AJ_G0033589.1 mouse_genomes_project 8 46747380 46753695 + protein_coding processed_transcript MGP_AJ_T0088938.1 MGP_AJ_G0033589.1 mouse_genomes_project 8 46747407 46879901 + MGP_AJ_P0088938 protein_coding protein_coding MGP_AJ_T0088939.1 MGP_AJ_G0033589.1 mouse_genomes_project 8 46840951 46879808 + MGP_AJ_P0088939 protein_coding protein_coding MGP_AJ_T0088940.1 MGP_AJ_G0033589.1 mouse_genomes_project 8 46863095 46899008 + protein_coding processed_transcript MGP_AJ_T0088042.1 MGP_AJ_G0033290.1 mouse_genomes_project 8 480616 486277 + protein_coding retained_intron MGP_AJ_T0088043.1 MGP_AJ_G0033290.1 mouse_genomes_project 8 480621 491198 + protein_coding retained_intron MGP_AJ_T0089972.1 MGP_AJ_G0033900.1 mouse_genomes_project 8 85753973 85817583 + MGP_AJ_P0089972 Papd5 protein_coding protein_coding MGP_AJ_T0089973.1 MGP_AJ_G0033900.1 mouse_genomes_project 8 85753973 85817589 + MGP_AJ_P0089973 Papd5 protein_coding protein_coding MGP_AJ_T0089974.1 MGP_AJ_G0033900.1 mouse_genomes_project 8 85753974 85817589 + MGP_AJ_P0089974 Papd5 protein_coding protein_coding MGP_AJ_T0089975.1 MGP_AJ_G0033900.1 mouse_genomes_project 8 85803239 85807177 + Papd5 protein_coding retained_intron MGP_AJ_T0089976.1 MGP_AJ_G0033900.1 mouse_genomes_project 8 85809922 85815395 + MGP_AJ_P0089976 Papd5 protein_coding protein_coding MGP_AJ_T0100197.1 MGP_AJ_G0038163.1 mouse_genomes_project 8 10236285 10236388 - Gm25014 snRNA snRNA MGP_AJ_T0102927.1 MGP_AJ_G0040667.1 mouse_genomes_project 8 97407482 97408871 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0090390.1 MGP_AJ_G0034053.1 mouse_genomes_project 8 103985892 103992869 - MGP_AJ_P0090390 Dpep2 protein_coding protein_coding MGP_AJ_T0090391.1 MGP_AJ_G0034053.1 mouse_genomes_project 8 103985893 103997727 - MGP_AJ_P0090391 Dpep2 protein_coding protein_coding MGP_AJ_T0090392.1 MGP_AJ_G0034053.1 mouse_genomes_project 8 103985898 103992879 - MGP_AJ_P0090392 Dpep2 protein_coding protein_coding MGP_AJ_T0090393.1 MGP_AJ_G0034053.1 mouse_genomes_project 8 103988798 103992842 - Dpep2 protein_coding retained_intron MGP_AJ_T0090394.1 MGP_AJ_G0034053.1 mouse_genomes_project 8 103989550 103992870 - Dpep2 protein_coding retained_intron MGP_AJ_T0088347.1 MGP_AJ_G0033381.1 mouse_genomes_project 8 12038536 12042852 - MGP_AJ_P0088347 BB014433 protein_coding protein_coding MGP_AJ_T0088348.1 MGP_AJ_G0033381.1 mouse_genomes_project 8 12038539 12042843 - MGP_AJ_P0088348 BB014433 protein_coding protein_coding MGP_AJ_T0088805.1 MGP_AJ_G0033557.1 mouse_genomes_project 8 42678020 42700602 - MGP_AJ_P0088805 Fam149a protein_coding protein_coding MGP_AJ_T0088806.1 MGP_AJ_G0033557.1 mouse_genomes_project 8 42678028 42727312 - MGP_AJ_P0088806 Fam149a protein_coding protein_coding MGP_AJ_T0088807.1 MGP_AJ_G0033557.1 mouse_genomes_project 8 42680062 42700499 - MGP_AJ_P0088807 Fam149a protein_coding protein_coding MGP_AJ_T0088398.1 MGP_AJ_G0033408.1 mouse_genomes_project 8 18884604 18887256 - MGP_AJ_P0088398 AY761184 protein_coding protein_coding MGP_AJ_T0100225.1 MGP_AJ_G0038191.1 mouse_genomes_project 8 87175132 87175239 - Gm26331 snRNA snRNA MGP_AJ_T0002345.1 MGP_AJ_G0002255.1 mouse_genomes_project 8 121763761 121764414 - TEC TEC MGP_AJ_T0018497.1 MGP_AJ_G0015706.1 mouse_genomes_project 8 123211920 123237149 + Gm16163 processed_transcript processed_transcript MGP_AJ_T0089467.1 MGP_AJ_G0033746.1 mouse_genomes_project 8 69186252 69199173 - MGP_AJ_P0089467 Fcho1 protein_coding protein_coding MGP_AJ_T0089468.1 MGP_AJ_G0033746.1 mouse_genomes_project 8 69186259 69203582 - MGP_AJ_P0089468 Fcho1 protein_coding protein_coding MGP_AJ_T0089469.1 MGP_AJ_G0033746.1 mouse_genomes_project 8 69186285 69203532 - Fcho1 protein_coding retained_intron MGP_AJ_T0089470.1 MGP_AJ_G0033746.1 mouse_genomes_project 8 69186518 69203532 - MGP_AJ_P0089470 Fcho1 protein_coding nonsense_mediated_decay MGP_AJ_T0089471.1 MGP_AJ_G0033746.1 mouse_genomes_project 8 69187502 69188972 - Fcho1 protein_coding retained_intron MGP_AJ_T0089472.1 MGP_AJ_G0033746.1 mouse_genomes_project 8 69187554 69190045 - Fcho1 protein_coding retained_intron MGP_AJ_T0089473.1 MGP_AJ_G0033746.1 mouse_genomes_project 8 69190407 69193419 - MGP_AJ_P0089473 Fcho1 protein_coding nonsense_mediated_decay MGP_AJ_T0089474.1 MGP_AJ_G0033746.1 mouse_genomes_project 8 69192225 69194501 - Fcho1 protein_coding retained_intron MGP_AJ_T0089475.1 MGP_AJ_G0033746.1 mouse_genomes_project 8 69193632 69203570 - MGP_AJ_P0089475 Fcho1 protein_coding protein_coding MGP_AJ_T0089476.1 MGP_AJ_G0033746.1 mouse_genomes_project 8 69193727 69199731 - Fcho1 protein_coding processed_transcript MGP_AJ_T0089477.1 MGP_AJ_G0033746.1 mouse_genomes_project 8 69194682 69203513 - Fcho1 protein_coding retained_intron MGP_AJ_T0089478.1 MGP_AJ_G0033746.1 mouse_genomes_project 8 69195080 69201213 - MGP_AJ_P0089478 Fcho1 protein_coding protein_coding MGP_AJ_T0016012.1 MGP_AJ_G0014107.1 mouse_genomes_project 8 77591728 77592820 - processed_pseudogene processed_pseudogene MGP_AJ_T0100221.1 MGP_AJ_G0038187.1 mouse_genomes_project 8 79675652 79675715 - Gm25267 snRNA snRNA MGP_AJ_T0088160.1 MGP_AJ_G0033322.1 mouse_genomes_project 8 5550086 5553016 + MGP_AJ_P0088160 protein_coding protein_coding MGP_AJ_T0088421.1 MGP_AJ_G0033425.1 mouse_genomes_project 8 19319796 19356451 - MGP_AJ_P0088421 Nek3 protein_coding protein_coding MGP_AJ_T0088422.1 MGP_AJ_G0033425.1 mouse_genomes_project 8 19319796 19356474 - MGP_AJ_P0088422 Nek3 protein_coding protein_coding MGP_AJ_T0088423.1 MGP_AJ_G0033425.1 mouse_genomes_project 8 19319799 19352418 - MGP_AJ_P0088423 Nek3 protein_coding protein_coding MGP_AJ_T0088424.1 MGP_AJ_G0033425.1 mouse_genomes_project 8 19320199 19323817 - Nek3 protein_coding retained_intron MGP_AJ_T0011008.1 MGP_AJ_G0009130.1 mouse_genomes_project 8 106976679 106976758 + Mir3108 miRNA miRNA MGP_AJ_T0088949.1 MGP_AJ_G0033593.1 mouse_genomes_project 8 51903443 51912979 - MGP_AJ_P0088949 Spcs3 protein_coding protein_coding MGP_AJ_T0101500.1 MGP_AJ_G0039466.1 mouse_genomes_project 8 70687964 70688104 - Gm22532 snoRNA snoRNA MGP_AJ_T0089617.1 MGP_AJ_G0033796.1 mouse_genomes_project 8 77176403 77205218 - MGP_AJ_P0089617 Abce1 protein_coding protein_coding MGP_AJ_T0089482.1 MGP_AJ_G0033748.1 mouse_genomes_project 8 69433895 69441641 + MGP_AJ_P0089482 Zfp882 protein_coding protein_coding MGP_AJ_T0089483.1 MGP_AJ_G0033748.1 mouse_genomes_project 8 69433944 69438867 + MGP_AJ_P0089483 Zfp882 protein_coding protein_coding MGP_AJ_T0089484.1 MGP_AJ_G0033748.1 mouse_genomes_project 8 69434192 69438871 + MGP_AJ_P0089484 Zfp882 protein_coding protein_coding MGP_AJ_T0016033.1 MGP_AJ_G0014128.1 mouse_genomes_project 8 98379535 98380186 + processed_pseudogene processed_pseudogene MGP_AJ_T0011713.1 MGP_AJ_G0009835.1 mouse_genomes_project 8 9295790 9296107 + Gm22207 misc_RNA misc_RNA MGP_AJ_T0009084.1 MGP_AJ_G0007303.1 mouse_genomes_project 8 19590121 19590997 + 1810012K16Rik lincRNA lincRNA MGP_AJ_T0089164.1 MGP_AJ_G0033660.1 mouse_genomes_project 8 67185528 67199886 + MGP_AJ_P0089164 Gmip protein_coding protein_coding MGP_AJ_T0089165.1 MGP_AJ_G0033660.1 mouse_genomes_project 8 67185539 67196990 + MGP_AJ_P0089165 Gmip protein_coding protein_coding MGP_AJ_T0089166.1 MGP_AJ_G0033660.1 mouse_genomes_project 8 67187386 67191710 + Gmip protein_coding processed_transcript MGP_AJ_T0089167.1 MGP_AJ_G0033660.1 mouse_genomes_project 8 67187542 67188522 + Gmip protein_coding processed_transcript MGP_AJ_T0089168.1 MGP_AJ_G0033660.1 mouse_genomes_project 8 67191120 67191958 + Gmip protein_coding retained_intron MGP_AJ_T0089169.1 MGP_AJ_G0033660.1 mouse_genomes_project 8 67191741 67194092 + Gmip protein_coding processed_transcript MGP_AJ_T0089170.1 MGP_AJ_G0033660.1 mouse_genomes_project 8 67194653 67195533 + Gmip protein_coding retained_intron MGP_AJ_T0089171.1 MGP_AJ_G0033660.1 mouse_genomes_project 8 67194994 67196995 + MGP_AJ_P0089171 Gmip protein_coding protein_coding MGP_AJ_T0089172.1 MGP_AJ_G0033660.1 mouse_genomes_project 8 67196005 67199349 + Gmip protein_coding processed_transcript MGP_AJ_T0098474.1 MGP_AJ_G0036458.1 mouse_genomes_project 8 6770085 6770435 - pseudogene pseudogene MGP_AJ_T0089885.1 MGP_AJ_G0033875.1 mouse_genomes_project 8 82621352 82624622 + MGP_AJ_P0089885 Dhps protein_coding protein_coding MGP_AJ_T0089886.1 MGP_AJ_G0033875.1 mouse_genomes_project 8 82621391 82624616 + MGP_AJ_P0089886 Dhps protein_coding nonsense_mediated_decay MGP_AJ_T0089887.1 MGP_AJ_G0033875.1 mouse_genomes_project 8 82621401 82622405 + Dhps protein_coding retained_intron MGP_AJ_T0089888.1 MGP_AJ_G0033875.1 mouse_genomes_project 8 82621896 82623038 + Dhps protein_coding retained_intron MGP_AJ_T0089889.1 MGP_AJ_G0033875.1 mouse_genomes_project 8 82622514 82623470 + Dhps protein_coding retained_intron MGP_AJ_T0089890.1 MGP_AJ_G0033875.1 mouse_genomes_project 8 82622514 82624611 + Dhps protein_coding retained_intron MGP_AJ_T0089891.1 MGP_AJ_G0033875.1 mouse_genomes_project 8 82623037 82623908 + Dhps protein_coding retained_intron MGP_AJ_T0089892.1 MGP_AJ_G0033875.1 mouse_genomes_project 8 82624158 82624611 + Dhps protein_coding retained_intron MGP_AJ_T0089838.1 MGP_AJ_G0033863.1 mouse_genomes_project 8 82458448 82484018 - MGP_AJ_P0089838 Mast1 protein_coding protein_coding MGP_AJ_T0089839.1 MGP_AJ_G0033863.1 mouse_genomes_project 8 82458585 82484012 - MGP_AJ_P0089839 Mast1 protein_coding protein_coding MGP_AJ_T0089840.1 MGP_AJ_G0033863.1 mouse_genomes_project 8 82458588 82470518 - Mast1 protein_coding retained_intron MGP_AJ_T0089842.1 MGP_AJ_G0033863.1 mouse_genomes_project 8 82468024 82472157 - Mast1 protein_coding retained_intron MGP_AJ_T0089843.1 MGP_AJ_G0033863.1 mouse_genomes_project 8 82470132 82475145 - Mast1 protein_coding retained_intron MGP_AJ_T0089844.1 MGP_AJ_G0033863.1 mouse_genomes_project 8 82481579 82484003 - Mast1 protein_coding retained_intron MGP_AJ_T0090786.1 MGP_AJ_G0034185.1 mouse_genomes_project 8 118953374 118954934 + Cox4i1 protein_coding retained_intron MGP_AJ_T0090787.1 MGP_AJ_G0034185.1 mouse_genomes_project 8 118953394 118959310 + MGP_AJ_P0090787 Cox4i1 protein_coding protein_coding MGP_AJ_T0090788.1 MGP_AJ_G0034185.1 mouse_genomes_project 8 118953449 118959142 + MGP_AJ_P0090788 Cox4i1 protein_coding nonsense_mediated_decay MGP_AJ_T0090789.1 MGP_AJ_G0034185.1 mouse_genomes_project 8 118957686 118959210 + Cox4i1 protein_coding retained_intron MGP_AJ_T0090790.1 MGP_AJ_G0034185.1 mouse_genomes_project 8 118958248 118959304 + Cox4i1 protein_coding retained_intron MGP_AJ_T0098738.1 MGP_AJ_G0036722.1 mouse_genomes_project 8 41941811 41941918 + Gm26089 rRNA rRNA MGP_AJ_T0088645.1 MGP_AJ_G0033502.1 mouse_genomes_project 8 30664856 30665698 + MGP_AJ_P0088645 5930422O12Rik protein_coding protein_coding MGP_AJ_T0089503.1 MGP_AJ_G0033753.1 mouse_genomes_project 8 69562685 69563910 + MGP_AJ_P0089503 Olfr373 protein_coding protein_coding MGP_AJ_T0101493.1 MGP_AJ_G0039459.1 mouse_genomes_project 8 61159059 61159190 + Gm24580 snoRNA snoRNA MGP_AJ_T0010954.1 MGP_AJ_G0009076.1 mouse_genomes_project 8 20341725 20341853 + Mir486 miRNA miRNA MGP_AJ_T0090690.1 MGP_AJ_G0034157.1 mouse_genomes_project 8 116050709 116062793 - MGP_AJ_P0090690 Mphosph6 protein_coding protein_coding MGP_AJ_T0089441.1 MGP_AJ_G0033740.1 mouse_genomes_project 8 69072281 69082566 + MGP_AJ_P0089441 Fam129c protein_coding protein_coding MGP_AJ_T0089442.1 MGP_AJ_G0033740.1 mouse_genomes_project 8 69072415 69082554 + Fam129c protein_coding retained_intron MGP_AJ_T0089443.1 MGP_AJ_G0033740.1 mouse_genomes_project 8 69073809 69075722 + Fam129c protein_coding processed_transcript MGP_AJ_T0089444.1 MGP_AJ_G0033740.1 mouse_genomes_project 8 69074543 69076864 + Fam129c protein_coding retained_intron MGP_AJ_T0089445.1 MGP_AJ_G0033740.1 mouse_genomes_project 8 69076896 69077573 + Fam129c protein_coding retained_intron MGP_AJ_T0089446.1 MGP_AJ_G0033740.1 mouse_genomes_project 8 69076980 69082554 + Fam129c protein_coding retained_intron MGP_AJ_T0089447.1 MGP_AJ_G0033740.1 mouse_genomes_project 8 69079373 69082201 + MGP_AJ_P0089447 Fam129c protein_coding nonsense_mediated_decay MGP_AJ_T0089448.1 MGP_AJ_G0033740.1 mouse_genomes_project 8 69079590 69082563 + MGP_AJ_P0089448 Fam129c protein_coding protein_coding MGP_AJ_T0090629.1 MGP_AJ_G0034133.1 mouse_genomes_project 8 110163526 110172287 + MGP_AJ_P0090629 Terf2ip protein_coding protein_coding MGP_AJ_T0089361.1 MGP_AJ_G0033717.1 mouse_genomes_project 8 68300521 68303151 - MGP_AJ_P0089361 Rpl18a protein_coding protein_coding MGP_AJ_T0089460.1 MGP_AJ_G0033743.1 mouse_genomes_project 8 69152643 69166919 + MGP_AJ_P0089460 Jak3 protein_coding protein_coding MGP_AJ_T0089461.1 MGP_AJ_G0033743.1 mouse_genomes_project 8 69152643 69164900 + MGP_AJ_P0089461 Jak3 protein_coding protein_coding MGP_AJ_T0089462.1 MGP_AJ_G0033743.1 mouse_genomes_project 8 69152899 69156654 + Jak3 protein_coding retained_intron MGP_AJ_T0089463.1 MGP_AJ_G0033743.1 mouse_genomes_project 8 69153898 69164902 + MGP_AJ_P0089463 Jak3 protein_coding protein_coding MGP_AJ_T0089464.1 MGP_AJ_G0033743.1 mouse_genomes_project 8 69154682 69166568 + Jak3 protein_coding retained_intron MGP_AJ_T0089591.1 MGP_AJ_G0033787.1 mouse_genomes_project 8 75891966 75895602 - MGP_AJ_P0089591 Pou4f2 protein_coding protein_coding MGP_AJ_T0016010.1 MGP_AJ_G0014105.1 mouse_genomes_project 8 77029944 77030919 - processed_pseudogene processed_pseudogene MGP_AJ_T0090148.1 MGP_AJ_G0033956.1 mouse_genomes_project 8 92552282 92564783 - MGP_AJ_P0090148 Dok4 protein_coding protein_coding MGP_AJ_T0088687.1 MGP_AJ_G0033511.1 mouse_genomes_project 8 31333856 31343939 + MGP_AJ_P0088687 Mboat4 protein_coding protein_coding MGP_AJ_T0089514.1 MGP_AJ_G0033760.1 mouse_genomes_project 8 69776030 69793199 + MGP_AJ_P0089514 Ap1m1 protein_coding protein_coding MGP_AJ_T0089515.1 MGP_AJ_G0033760.1 mouse_genomes_project 8 69776122 69785894 + MGP_AJ_P0089515 Ap1m1 protein_coding protein_coding MGP_AJ_T0089516.1 MGP_AJ_G0033760.1 mouse_genomes_project 8 69776335 69787830 + MGP_AJ_P0089516 Ap1m1 protein_coding protein_coding MGP_AJ_T0089517.1 MGP_AJ_G0033760.1 mouse_genomes_project 8 69788867 69792421 + Ap1m1 protein_coding retained_intron MGP_AJ_T0089518.1 MGP_AJ_G0033760.1 mouse_genomes_project 8 69788947 69792727 + Ap1m1 protein_coding retained_intron MGP_AJ_T0088106.1 MGP_AJ_G0033307.1 mouse_genomes_project 8 1144183 1152037 - MGP_AJ_P0088106 Prr36 protein_coding protein_coding MGP_AJ_T0088107.1 MGP_AJ_G0033307.1 mouse_genomes_project 8 1149773 1151637 - MGP_AJ_P0088107 Prr36 protein_coding protein_coding MGP_AJ_T0088108.1 MGP_AJ_G0033307.1 mouse_genomes_project 8 1150696 1151877 - MGP_AJ_P0088108 Prr36 protein_coding protein_coding MGP_AJ_T0088109.1 MGP_AJ_G0033307.1 mouse_genomes_project 8 1151132 1152184 - MGP_AJ_P0088109 Prr36 protein_coding protein_coding MGP_AJ_T0100203.1 MGP_AJ_G0038169.1 mouse_genomes_project 8 33679837 33679988 - Gm26150 snRNA snRNA MGP_AJ_T0089510.1 MGP_AJ_G0033757.1 mouse_genomes_project 8 69739424 69750784 + MGP_AJ_P0089510 Hsh2d protein_coding protein_coding MGP_AJ_T0089511.1 MGP_AJ_G0033757.1 mouse_genomes_project 8 69743425 69750821 + MGP_AJ_P0089511 Hsh2d protein_coding protein_coding MGP_AJ_T0088162.1 MGP_AJ_G0033324.1 mouse_genomes_project 8 6103274 6666691 - MGP_AJ_P0088162 Fam155a protein_coding protein_coding MGP_AJ_T0015957.1 MGP_AJ_G0014052.1 mouse_genomes_project 8 912132 918237 + processed_pseudogene processed_pseudogene MGP_AJ_T0089298.1 MGP_AJ_G0033693.1 mouse_genomes_project 8 67905913 67921458 - MGP_AJ_P0089298 Kxd1 protein_coding protein_coding MGP_AJ_T0089304.1 MGP_AJ_G0033693.1 mouse_genomes_project 8 67905964 67926247 - MGP_AJ_P0089304 Kxd1 protein_coding protein_coding MGP_AJ_T0089305.1 MGP_AJ_G0033693.1 mouse_genomes_project 8 67911690 67921475 - MGP_AJ_P0089305 Kxd1 protein_coding protein_coding MGP_AJ_T0089306.1 MGP_AJ_G0033693.1 mouse_genomes_project 8 67911898 67921574 - MGP_AJ_P0089306 Kxd1 protein_coding protein_coding MGP_AJ_T0089307.1 MGP_AJ_G0033693.1 mouse_genomes_project 8 67912421 67921475 - MGP_AJ_P0089307 Kxd1 protein_coding nonsense_mediated_decay MGP_AJ_T0089308.1 MGP_AJ_G0033693.1 mouse_genomes_project 8 67912984 67926247 - MGP_AJ_P0089308 Kxd1 protein_coding protein_coding MGP_AJ_T0089309.1 MGP_AJ_G0033693.1 mouse_genomes_project 8 67913689 67921385 - MGP_AJ_P0089309 Kxd1 protein_coding protein_coding MGP_AJ_T0089310.1 MGP_AJ_G0033693.1 mouse_genomes_project 8 67916705 67926074 - MGP_AJ_P0089310 Kxd1 protein_coding protein_coding MGP_AJ_T0089311.1 MGP_AJ_G0033693.1 mouse_genomes_project 8 67917365 67921399 - Kxd1 protein_coding retained_intron MGP_AJ_T0088399.1 MGP_AJ_G0033409.1 mouse_genomes_project 8 18884619 18887256 - MGP_AJ_P0088399 protein_coding protein_coding MGP_AJ_T0091081.1 MGP_AJ_G0034266.1 mouse_genomes_project 8 123803303 123904766 - MGP_AJ_P0091081 Sipa1l2 protein_coding protein_coding MGP_AJ_T0090847.1 MGP_AJ_G0034198.1 mouse_genomes_project 8 120232314 120263085 - MGP_AJ_P0090847 Car5a protein_coding protein_coding MGP_AJ_T0090848.1 MGP_AJ_G0034198.1 mouse_genomes_project 8 120233878 120245710 - Car5a protein_coding processed_transcript MGP_AJ_T0009159.1 MGP_AJ_G0007362.1 mouse_genomes_project 8 89506080 89511582 - Gm28515 lincRNA lincRNA MGP_AJ_T0011707.1 MGP_AJ_G0009829.1 mouse_genomes_project 8 650367 650680 - Gm23886 misc_RNA misc_RNA MGP_AJ_T0100205.1 MGP_AJ_G0038171.1 mouse_genomes_project 8 40060851 40060957 + Gm26181 snRNA snRNA MGP_AJ_T0088207.1 MGP_AJ_G0033345.1 mouse_genomes_project 8 9555754 9614622 - MGP_AJ_P0088207 Tubgcp3 protein_coding protein_coding MGP_AJ_T0088208.1 MGP_AJ_G0033345.1 mouse_genomes_project 8 9555754 9614473 - MGP_AJ_P0088208 Tubgcp3 protein_coding nonsense_mediated_decay MGP_AJ_T0088209.1 MGP_AJ_G0033345.1 mouse_genomes_project 8 9555756 9579278 - Tubgcp3 protein_coding retained_intron MGP_AJ_T0088210.1 MGP_AJ_G0033345.1 mouse_genomes_project 8 9556644 9579251 - Tubgcp3 protein_coding retained_intron MGP_AJ_T0088211.1 MGP_AJ_G0033345.1 mouse_genomes_project 8 9563270 9599741 - Tubgcp3 protein_coding retained_intron MGP_AJ_T0088212.1 MGP_AJ_G0033345.1 mouse_genomes_project 8 9571883 9614497 - Tubgcp3 protein_coding retained_intron MGP_AJ_T0088213.1 MGP_AJ_G0033345.1 mouse_genomes_project 8 9591206 9598023 - Tubgcp3 protein_coding retained_intron MGP_AJ_T0088214.1 MGP_AJ_G0033345.1 mouse_genomes_project 8 9595502 9599755 - MGP_AJ_P0088214 Tubgcp3 protein_coding nonsense_mediated_decay MGP_AJ_T0088215.1 MGP_AJ_G0033345.1 mouse_genomes_project 8 9595537 9614333 - MGP_AJ_P0088215 Tubgcp3 protein_coding nonsense_mediated_decay MGP_AJ_T0089095.1 MGP_AJ_G0033639.1 mouse_genomes_project 8 64868343 64876053 + MGP_AJ_P0089095 Nat2 protein_coding protein_coding MGP_AJ_T0089096.1 MGP_AJ_G0033639.1 mouse_genomes_project 8 64868424 64876057 + MGP_AJ_P0089096 Nat2 protein_coding protein_coding MGP_AJ_T0102921.1 MGP_AJ_G0040661.1 mouse_genomes_project 8 16400674 18909997 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0089430.1 MGP_AJ_G0033734.1 mouse_genomes_project 8 69006808 69009963 - MGP_AJ_P0089430 Bst2 protein_coding protein_coding MGP_AJ_T0088837.1 MGP_AJ_G0033560.1 mouse_genomes_project 8 43230390 43267084 + MGP_AJ_P0088837 Pdlim3 protein_coding protein_coding MGP_AJ_T0088761.1 MGP_AJ_G0033541.1 mouse_genomes_project 8 38240259 38255899 + Pdgfrl protein_coding retained_intron MGP_AJ_T0088762.1 MGP_AJ_G0033541.1 mouse_genomes_project 8 38240275 38300845 + MGP_AJ_P0088762 Pdgfrl protein_coding protein_coding MGP_AJ_T0088527.1 MGP_AJ_G0033459.1 mouse_genomes_project 8 22230991 22295716 - MGP_AJ_P0088527 Plekha2 protein_coding protein_coding MGP_AJ_T0088528.1 MGP_AJ_G0033459.1 mouse_genomes_project 8 22232974 22295507 - MGP_AJ_P0088528 Plekha2 protein_coding protein_coding MGP_AJ_T0088529.1 MGP_AJ_G0033459.1 mouse_genomes_project 8 22235087 22295294 - MGP_AJ_P0088529 Plekha2 protein_coding protein_coding MGP_AJ_T0088530.1 MGP_AJ_G0033459.1 mouse_genomes_project 8 22255755 22284236 - MGP_AJ_P0088530 Plekha2 protein_coding protein_coding MGP_AJ_T0009118.1 MGP_AJ_G0007332.1 mouse_genomes_project 8 68181468 68182477 + 2010320M18Rik lincRNA lincRNA MGP_AJ_T0088585.1 MGP_AJ_G0033473.1 mouse_genomes_project 8 23182063 23197279 - MGP_AJ_P0088585 Pomk protein_coding protein_coding MGP_AJ_T0089558.1 MGP_AJ_G0033777.1 mouse_genomes_project 8 72578991 72585834 + MGP_AJ_P0089558 Hmox1 protein_coding protein_coding MGP_AJ_T0089559.1 MGP_AJ_G0033777.1 mouse_genomes_project 8 72579041 72581689 + Hmox1 protein_coding retained_intron MGP_AJ_T0089560.1 MGP_AJ_G0033777.1 mouse_genomes_project 8 72579250 72582442 + MGP_AJ_P0089560 Hmox1 protein_coding protein_coding MGP_AJ_T0010953.1 MGP_AJ_G0009075.1 mouse_genomes_project 8 20298677 20298802 - Gm44365 miRNA miRNA MGP_AJ_T0016001.1 MGP_AJ_G0014096.1 mouse_genomes_project 8 63109162 63109447 - processed_pseudogene processed_pseudogene MGP_AJ_T0090151.1 MGP_AJ_G0033958.1 mouse_genomes_project 8 92612922 92632675 + MGP_AJ_P0090151 Adgrg5 protein_coding protein_coding MGP_AJ_T0090152.1 MGP_AJ_G0033958.1 mouse_genomes_project 8 92612922 92624001 + MGP_AJ_P0090152 Adgrg5 protein_coding protein_coding MGP_AJ_T0090153.1 MGP_AJ_G0033958.1 mouse_genomes_project 8 92612922 92632685 + MGP_AJ_P0090153 Adgrg5 protein_coding protein_coding MGP_AJ_T0090154.1 MGP_AJ_G0033958.1 mouse_genomes_project 8 92612927 92632675 + MGP_AJ_P0090154 Adgrg5 protein_coding nonsense_mediated_decay MGP_AJ_T0090155.1 MGP_AJ_G0033958.1 mouse_genomes_project 8 92623651 92624569 + Adgrg5 protein_coding processed_transcript MGP_AJ_T0088963.1 MGP_AJ_G0033597.1 mouse_genomes_project 8 52319522 52427111 + MGP_AJ_P0088963 Gpm6a protein_coding protein_coding MGP_AJ_T0015982.1 MGP_AJ_G0014077.1 mouse_genomes_project 8 20326665 20326920 + processed_pseudogene processed_pseudogene MGP_AJ_T0090689.1 MGP_AJ_G0034156.1 mouse_genomes_project 8 115959866 116017208 + MGP_AJ_P0090689 Hsd17b2 protein_coding protein_coding MGP_AJ_T0088725.1 MGP_AJ_G0033531.1 mouse_genomes_project 8 37620968 37692293 + MGP_AJ_P0088725 Micu3 protein_coding protein_coding MGP_AJ_T0088726.1 MGP_AJ_G0033531.1 mouse_genomes_project 8 37621668 37693959 + MGP_AJ_P0088726 Micu3 protein_coding protein_coding MGP_AJ_T0088727.1 MGP_AJ_G0033531.1 mouse_genomes_project 8 37671921 37683234 + Micu3 protein_coding retained_intron MGP_AJ_T0010970.1 MGP_AJ_G0009092.1 mouse_genomes_project 8 68331890 68331984 + Mir1969 miRNA miRNA MGP_AJ_T0088523.1 MGP_AJ_G0033456.1 mouse_genomes_project 8 22142228 22209163 - MGP_AJ_P0088523 Adam9 protein_coding protein_coding MGP_AJ_T0002343.1 MGP_AJ_G0002253.1 mouse_genomes_project 8 119438427 119439105 + TEC TEC MGP_AJ_T0005382.1 MGP_AJ_G0004560.1 mouse_genomes_project 8 105053465 105054979 - Gm16208 antisense antisense MGP_AJ_T0088144.1 MGP_AJ_G0033316.1 mouse_genomes_project 8 1419458 1445054 + MGP_AJ_P0088144 Cers4 protein_coding protein_coding MGP_AJ_T0088145.1 MGP_AJ_G0033316.1 mouse_genomes_project 8 1419572 1442115 + MGP_AJ_P0088145 Cers4 protein_coding protein_coding MGP_AJ_T0088146.1 MGP_AJ_G0033316.1 mouse_genomes_project 8 1419631 1458070 + MGP_AJ_P0088146 Cers4 protein_coding protein_coding MGP_AJ_T0088147.1 MGP_AJ_G0033316.1 mouse_genomes_project 8 1419834 1450082 + MGP_AJ_P0088147 Cers4 protein_coding nonsense_mediated_decay MGP_AJ_T0088148.1 MGP_AJ_G0033316.1 mouse_genomes_project 8 1419881 1451512 + Cers4 protein_coding retained_intron MGP_AJ_T0088149.1 MGP_AJ_G0033316.1 mouse_genomes_project 8 1419884 1451354 + MGP_AJ_P0088149 Cers4 protein_coding protein_coding MGP_AJ_T0088150.1 MGP_AJ_G0033316.1 mouse_genomes_project 8 1419890 1448857 + Cers4 protein_coding retained_intron MGP_AJ_T0088151.1 MGP_AJ_G0033316.1 mouse_genomes_project 8 1419914 1448948 + Cers4 protein_coding retained_intron MGP_AJ_T0088152.1 MGP_AJ_G0033316.1 mouse_genomes_project 8 1419953 1446923 + Cers4 protein_coding retained_intron MGP_AJ_T0088279.1 MGP_AJ_G0033357.1 mouse_genomes_project 8 10241086 10280925 + MGP_AJ_P0088279 Tmco3 protein_coding protein_coding MGP_AJ_T0088280.1 MGP_AJ_G0033357.1 mouse_genomes_project 8 10244804 10279403 + MGP_AJ_P0088280 Tmco3 protein_coding unknown_likely_coding MGP_AJ_T0005328.1 MGP_AJ_G0004518.1 mouse_genomes_project 8 9824659 9829390 - Gm15353 antisense antisense MGP_AJ_T0005329.1 MGP_AJ_G0004518.1 mouse_genomes_project 8 9824803 9829380 - Gm15353 antisense antisense MGP_AJ_T0101490.1 MGP_AJ_G0039456.1 mouse_genomes_project 8 58119419 58119527 - Gm23329 snoRNA snoRNA MGP_AJ_T0098477.1 MGP_AJ_G0036461.1 mouse_genomes_project 8 72869779 72870317 + pseudogene pseudogene MGP_AJ_T0009170.1 MGP_AJ_G0007367.1 mouse_genomes_project 8 91424200 91484552 - Gm26843 lincRNA lincRNA MGP_AJ_T0088415.1 MGP_AJ_G0033423.1 mouse_genomes_project 8 19253814 19264981 + MGP_AJ_P0088415 Alg11 protein_coding protein_coding MGP_AJ_T0088416.1 MGP_AJ_G0033423.1 mouse_genomes_project 8 19253815 19264981 + MGP_AJ_P0088416 Alg11 protein_coding protein_coding MGP_AJ_T0088417.1 MGP_AJ_G0033423.1 mouse_genomes_project 8 19253833 19258541 + MGP_AJ_P0088417 Alg11 protein_coding protein_coding MGP_AJ_T0088418.1 MGP_AJ_G0033423.1 mouse_genomes_project 8 19262369 19263233 + Alg11 protein_coding processed_transcript MGP_AJ_T0099098.1 MGP_AJ_G0037070.1 mouse_genomes_project 8 31117099 31118069 - Gm26978 sense_intronic sense_intronic MGP_AJ_T0009138.1 MGP_AJ_G0007350.1 mouse_genomes_project 8 84704456 84734365 - Gm10637 lincRNA lincRNA MGP_AJ_T0009139.1 MGP_AJ_G0007350.1 mouse_genomes_project 8 84729605 84734376 - Gm10637 lincRNA lincRNA MGP_AJ_T0088367.1 MGP_AJ_G0033385.1 mouse_genomes_project 8 15599227 15650480 - MGP_AJ_P0088367 Angpt2 protein_coding protein_coding MGP_AJ_T0088368.1 MGP_AJ_G0033385.1 mouse_genomes_project 8 15601055 15608500 - Angpt2 protein_coding processed_transcript MGP_AJ_T0088620.1 MGP_AJ_G0033487.1 mouse_genomes_project 8 24612490 24641779 + MGP_AJ_P0088620 Chrnb3 protein_coding protein_coding MGP_AJ_T0089408.1 MGP_AJ_G0033728.1 mouse_genomes_project 8 68927848 68934806 - MGP_AJ_P0089408 Abhd8 protein_coding protein_coding MGP_AJ_T0089977.1 MGP_AJ_G0033901.1 mouse_genomes_project 8 85832382 85890741 + MGP_AJ_P0089977 Adcy7 protein_coding protein_coding MGP_AJ_T0089978.1 MGP_AJ_G0033901.1 mouse_genomes_project 8 85842962 85890741 + MGP_AJ_P0089978 Adcy7 protein_coding protein_coding MGP_AJ_T0089979.1 MGP_AJ_G0033901.1 mouse_genomes_project 8 85848922 85890741 + MGP_AJ_P0089979 Adcy7 protein_coding protein_coding MGP_AJ_T0089980.1 MGP_AJ_G0033901.1 mouse_genomes_project 8 85854084 85890741 + MGP_AJ_P0089980 Adcy7 protein_coding protein_coding MGP_AJ_T0089981.1 MGP_AJ_G0033901.1 mouse_genomes_project 8 85866535 85888597 + MGP_AJ_P0089981 Adcy7 protein_coding unknown_likely_coding MGP_AJ_T0089191.1 MGP_AJ_G0033667.1 mouse_genomes_project 8 67288542 67332407 - MGP_AJ_P0089191 Gatad2a protein_coding protein_coding MGP_AJ_T0089192.1 MGP_AJ_G0033667.1 mouse_genomes_project 8 67288547 67378621 - MGP_AJ_P0089192 Gatad2a protein_coding protein_coding MGP_AJ_T0089193.1 MGP_AJ_G0033667.1 mouse_genomes_project 8 67288547 67378621 - MGP_AJ_P0089193 Gatad2a protein_coding protein_coding MGP_AJ_T0015970.1 MGP_AJ_G0014065.1 mouse_genomes_project 8 16502372 16502892 - processed_pseudogene processed_pseudogene MGP_AJ_T0088904.1 MGP_AJ_G0033578.1 mouse_genomes_project 8 44841424 44884650 - MGP_AJ_P0088904 Trappc11 protein_coding protein_coding MGP_AJ_T0088905.1 MGP_AJ_G0033578.1 mouse_genomes_project 8 44841437 44876200 - Trappc11 protein_coding retained_intron MGP_AJ_T0088906.1 MGP_AJ_G0033578.1 mouse_genomes_project 8 44841438 44884653 - Trappc11 protein_coding retained_intron MGP_AJ_T0088907.1 MGP_AJ_G0033578.1 mouse_genomes_project 8 44855662 44862766 - MGP_AJ_P0088907 Trappc11 protein_coding protein_coding MGP_AJ_T0088908.1 MGP_AJ_G0033578.1 mouse_genomes_project 8 44875839 44879213 - Trappc11 protein_coding retained_intron MGP_AJ_T0102924.1 MGP_AJ_G0040664.1 mouse_genomes_project 8 18887045 18887208 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0099103.1 MGP_AJ_G0037075.1 mouse_genomes_project 8 120236123 120236782 - sense_intronic sense_intronic MGP_AJ_T0088622.1 MGP_AJ_G0033489.1 mouse_genomes_project 8 24706439 24765919 + MGP_AJ_P0088622 protein_coding protein_coding MGP_AJ_T0089872.1 MGP_AJ_G0033872.1 mouse_genomes_project 8 82584495 82605180 + MGP_AJ_P0089872 Tnpo2 protein_coding protein_coding MGP_AJ_T0089873.1 MGP_AJ_G0033872.1 mouse_genomes_project 8 82584748 82605180 + MGP_AJ_P0089873 Tnpo2 protein_coding protein_coding MGP_AJ_T0089874.1 MGP_AJ_G0033872.1 mouse_genomes_project 8 82585971 82605184 + MGP_AJ_P0089874 Tnpo2 protein_coding unknown_likely_coding MGP_AJ_T0101498.1 MGP_AJ_G0039464.1 mouse_genomes_project 8 67509629 67509755 - Gm25906 snoRNA snoRNA MGP_AJ_T0089066.1 MGP_AJ_G0033627.1 mouse_genomes_project 8 62237133 62259256 + MGP_AJ_P0089066 Tmem192 protein_coding protein_coding MGP_AJ_T0089067.1 MGP_AJ_G0033627.1 mouse_genomes_project 8 62237133 62259256 + MGP_AJ_P0089067 Tmem192 protein_coding protein_coding MGP_AJ_T0005351.1 MGP_AJ_G0004534.1 mouse_genomes_project 8 43062228 43158931 - Sorbs2os antisense antisense MGP_AJ_T0088259.1 MGP_AJ_G0033352.1 mouse_genomes_project 8 10050390 10099528 + MGP_AJ_P0088259 Cul4a protein_coding protein_coding MGP_AJ_T0088260.1 MGP_AJ_G0033352.1 mouse_genomes_project 8 10050509 10073024 + MGP_AJ_P0088260 Cul4a protein_coding protein_coding MGP_AJ_T0088261.1 MGP_AJ_G0033352.1 mouse_genomes_project 8 10050705 10070548 + Cul4a protein_coding retained_intron MGP_AJ_T0088262.1 MGP_AJ_G0033352.1 mouse_genomes_project 8 10072326 10098950 + MGP_AJ_P0088262 Cul4a protein_coding nonsense_mediated_decay MGP_AJ_T0088263.1 MGP_AJ_G0033352.1 mouse_genomes_project 8 10091430 10094180 + Cul4a protein_coding retained_intron MGP_AJ_T0088264.1 MGP_AJ_G0033352.1 mouse_genomes_project 8 10091894 10098207 + Cul4a protein_coding processed_transcript MGP_AJ_T0088265.1 MGP_AJ_G0033352.1 mouse_genomes_project 8 10095812 10099528 + Cul4a protein_coding retained_intron MGP_AJ_T0101487.1 MGP_AJ_G0039453.1 mouse_genomes_project 8 50389666 50389782 + Gm23666 snoRNA snoRNA MGP_AJ_T0089824.1 MGP_AJ_G0033860.1 mouse_genomes_project 8 82432448 82438936 - MGP_AJ_P0089824 Gcdh protein_coding protein_coding MGP_AJ_T0089825.1 MGP_AJ_G0033860.1 mouse_genomes_project 8 82435988 82438540 - Gcdh protein_coding retained_intron MGP_AJ_T0089826.1 MGP_AJ_G0033860.1 mouse_genomes_project 8 82436187 82437922 - Gcdh protein_coding retained_intron MGP_AJ_T0089827.1 MGP_AJ_G0033860.1 mouse_genomes_project 8 82437906 82438730 - Gcdh protein_coding retained_intron MGP_AJ_T0089828.1 MGP_AJ_G0033860.1 mouse_genomes_project 8 82438349 82439176 - MGP_AJ_P0089828 Gcdh protein_coding protein_coding MGP_AJ_T0005367.1 MGP_AJ_G0004548.1 mouse_genomes_project 8 66462599 66463313 + antisense antisense MGP_AJ_T0011718.1 MGP_AJ_G0009840.1 mouse_genomes_project 8 43444101 43444374 + Gm23030 misc_RNA misc_RNA MGP_AJ_T0101473.1 MGP_AJ_G0039439.1 mouse_genomes_project 8 20491251 20491383 - Gm24335 snoRNA snoRNA MGP_AJ_T0090592.1 MGP_AJ_G0034120.1 mouse_genomes_project 8 109585268 109662096 - MGP_AJ_P0090592 Wdr59 protein_coding protein_coding MGP_AJ_T0090593.1 MGP_AJ_G0034120.1 mouse_genomes_project 8 109585268 109662096 - MGP_AJ_P0090593 Wdr59 protein_coding protein_coding MGP_AJ_T0090314.1 MGP_AJ_G0034020.1 mouse_genomes_project 8 103290484 103301773 - MGP_AJ_P0090314 protein_coding protein_coding MGP_AJ_T0089629.1 MGP_AJ_G0033803.1 mouse_genomes_project 8 78262394 78379107 - MGP_AJ_P0089629 Gab1 protein_coding protein_coding MGP_AJ_T0090324.1 MGP_AJ_G0034023.1 mouse_genomes_project 8 103326698 103348422 + MGP_AJ_P0090324 Slc9a5 protein_coding protein_coding MGP_AJ_T0009160.1 MGP_AJ_G0007363.1 mouse_genomes_project 8 89625640 89640289 + Gm28516 lincRNA lincRNA MGP_AJ_T0089643.1 MGP_AJ_G0033806.1 mouse_genomes_project 8 79846128 79922768 - MGP_AJ_P0089643 Il15 protein_coding protein_coding MGP_AJ_T0010993.1 MGP_AJ_G0009115.1 mouse_genomes_project 8 85694305 85694373 + Mir7071 miRNA miRNA MGP_AJ_T0101509.1 MGP_AJ_G0039475.1 mouse_genomes_project 8 88650710 88650842 - Gm22428 snoRNA snoRNA MGP_AJ_T0018453.1 MGP_AJ_G0015688.1 mouse_genomes_project 8 38328396 38335105 + B430010I23Rik processed_transcript processed_transcript MGP_AJ_T0018454.1 MGP_AJ_G0015688.1 mouse_genomes_project 8 38328666 38331464 + B430010I23Rik processed_transcript processed_transcript MGP_AJ_T0005335.1 MGP_AJ_G0004522.1 mouse_genomes_project 8 12012174 12015986 - 5830468F06Rik antisense antisense MGP_AJ_T0089725.1 MGP_AJ_G0033837.1 mouse_genomes_project 8 81641506 81648923 - MGP_AJ_P0089725 Dcaf15 protein_coding protein_coding MGP_AJ_T0089726.1 MGP_AJ_G0033837.1 mouse_genomes_project 8 81641884 81648898 - MGP_AJ_P0089726 Dcaf15 protein_coding unknown_likely_coding MGP_AJ_T0005361.1 MGP_AJ_G0004543.1 mouse_genomes_project 8 63761046 63764400 - Gm15356 antisense antisense MGP_AJ_T0090912.1 MGP_AJ_G0034215.1 mouse_genomes_project 8 120949171 120952437 - MGP_AJ_P0090912 Pabpn1l protein_coding protein_coding MGP_AJ_T0090952.1 MGP_AJ_G0034225.1 mouse_genomes_project 8 121549683 121558304 - MGP_AJ_P0090952 Chmp1a protein_coding unknown_likely_coding MGP_AJ_T0090953.1 MGP_AJ_G0034225.1 mouse_genomes_project 8 121549690 121558392 - MGP_AJ_P0090953 Chmp1a protein_coding protein_coding MGP_AJ_T0090954.1 MGP_AJ_G0034225.1 mouse_genomes_project 8 121551370 121555165 - Chmp1a protein_coding retained_intron MGP_AJ_T0090955.1 MGP_AJ_G0034225.1 mouse_genomes_project 8 121554982 121558395 - Chmp1a protein_coding retained_intron MGP_AJ_T0090630.1 MGP_AJ_G0034134.1 mouse_genomes_project 8 110727607 111002775 + Cntnap4 protein_coding retained_intron MGP_AJ_T0090631.1 MGP_AJ_G0034134.1 mouse_genomes_project 8 110727607 111025961 + MGP_AJ_P0090631 Cntnap4 protein_coding protein_coding MGP_AJ_T0090632.1 MGP_AJ_G0034134.1 mouse_genomes_project 8 110727607 111025949 + MGP_AJ_P0090632 Cntnap4 protein_coding protein_coding MGP_AJ_T0090633.1 MGP_AJ_G0034134.1 mouse_genomes_project 8 110727619 110942205 + Cntnap4 protein_coding retained_intron MGP_AJ_T0090634.1 MGP_AJ_G0034134.1 mouse_genomes_project 8 110886273 110888385 + Cntnap4 protein_coding processed_transcript MGP_AJ_T0090635.1 MGP_AJ_G0034134.1 mouse_genomes_project 8 110929336 110946696 + Cntnap4 protein_coding processed_transcript MGP_AJ_T0002335.1 MGP_AJ_G0002245.1 mouse_genomes_project 8 97765943 97767963 + TEC TEC MGP_AJ_T0091098.1 MGP_AJ_G0034271.1 mouse_genomes_project 8 124409639 124445117 + MGP_AJ_P0091098 Kcnk1 protein_coding protein_coding MGP_AJ_T0088619.1 MGP_AJ_G0033486.1 mouse_genomes_project 8 24482135 24497916 + MGP_AJ_P0088619 Eif4ebp1 protein_coding protein_coding MGP_AJ_T0101488.1 MGP_AJ_G0039454.1 mouse_genomes_project 8 53863576 53863708 - Gm24375 snoRNA snoRNA MGP_AJ_T0100219.1 MGP_AJ_G0038185.1 mouse_genomes_project 8 75263066 75263172 + Gm23981 snRNA snRNA MGP_AJ_T0088510.1 MGP_AJ_G0033454.1 mouse_genomes_project 8 21935958 22003751 - MGP_AJ_P0088510 Adam5 protein_coding protein_coding MGP_AJ_T0088511.1 MGP_AJ_G0033454.1 mouse_genomes_project 8 21935958 22016853 - MGP_AJ_P0088511 Adam5 protein_coding protein_coding MGP_AJ_T0088512.1 MGP_AJ_G0033454.1 mouse_genomes_project 8 21936067 22016779 - Adam5 protein_coding processed_transcript MGP_AJ_T0088513.1 MGP_AJ_G0033454.1 mouse_genomes_project 8 21941666 22017163 - MGP_AJ_P0088513 Adam5 protein_coding protein_coding MGP_AJ_T0005349.1 MGP_AJ_G0004532.1 mouse_genomes_project 8 38364045 38376960 + Gm16193 antisense antisense MGP_AJ_T0002327.1 MGP_AJ_G0002238.1 mouse_genomes_project 8 10238425 10240540 - TEC TEC MGP_AJ_T0015988.1 MGP_AJ_G0014083.1 mouse_genomes_project 8 33303007 33303403 + processed_pseudogene processed_pseudogene MGP_AJ_T0088941.1 MGP_AJ_G0033590.1 mouse_genomes_project 8 50904755 50916337 + MGP_AJ_P0088941 Aga protein_coding protein_coding MGP_AJ_T0088441.1 MGP_AJ_G0033436.1 mouse_genomes_project 8 19819801 19845531 - MGP_AJ_P0088441 Polb protein_coding protein_coding MGP_AJ_T0005379.1 MGP_AJ_G0004558.1 mouse_genomes_project 8 103548325 103550732 + Gm38250 antisense antisense MGP_AJ_T0005380.1 MGP_AJ_G0004558.1 mouse_genomes_project 8 103548352 103561078 + Gm38250 antisense antisense MGP_AJ_T0100198.1 MGP_AJ_G0038164.1 mouse_genomes_project 8 20015615 20015733 - Gm24735 snRNA snRNA MGP_AJ_T0088652.1 MGP_AJ_G0033506.1 mouse_genomes_project 8 30886718 30908744 + Gsr protein_coding processed_transcript MGP_AJ_T0088653.1 MGP_AJ_G0033506.1 mouse_genomes_project 8 30887417 30932737 + MGP_AJ_P0088653 Gsr protein_coding protein_coding MGP_AJ_T0088654.1 MGP_AJ_G0033506.1 mouse_genomes_project 8 30903745 30919978 + Gsr protein_coding processed_transcript MGP_AJ_T0009105.1 MGP_AJ_G0007320.1 mouse_genomes_project 8 39174275 39386441 + 2810404M03Rik lincRNA lincRNA MGP_AJ_T0088786.1 MGP_AJ_G0033546.1 mouse_genomes_project 8 38716478 38739729 - MGP_AJ_P0088786 Frg1 protein_coding protein_coding MGP_AJ_T0089869.1 MGP_AJ_G0033869.1 mouse_genomes_project 8 82554070 82562181 - MGP_AJ_P0089869 Best2 protein_coding protein_coding MGP_AJ_T0090140.1 MGP_AJ_G0033954.1 mouse_genomes_project 8 92526761 92543108 + MGP_AJ_P0090140 Coq9 protein_coding protein_coding MGP_AJ_T0090141.1 MGP_AJ_G0033954.1 mouse_genomes_project 8 92526845 92538995 + Coq9 protein_coding retained_intron MGP_AJ_T0090142.1 MGP_AJ_G0033954.1 mouse_genomes_project 8 92526855 92531202 + Coq9 protein_coding retained_intron MGP_AJ_T0090143.1 MGP_AJ_G0033954.1 mouse_genomes_project 8 92526869 92541408 + Coq9 protein_coding retained_intron MGP_AJ_T0090144.1 MGP_AJ_G0033954.1 mouse_genomes_project 8 92526869 92541483 + MGP_AJ_P0090144 Coq9 protein_coding protein_coding MGP_AJ_T0090145.1 MGP_AJ_G0033954.1 mouse_genomes_project 8 92538401 92539195 + Coq9 protein_coding retained_intron MGP_AJ_T0090146.1 MGP_AJ_G0033954.1 mouse_genomes_project 8 92541727 92542550 + Coq9 protein_coding retained_intron MGP_AJ_T0016039.1 MGP_AJ_G0014134.1 mouse_genomes_project 8 122233465 122233832 + processed_pseudogene processed_pseudogene MGP_AJ_T0101519.1 MGP_AJ_G0039485.1 mouse_genomes_project 8 109027415 109027563 + Gm26132 snoRNA snoRNA MGP_AJ_T0089116.1 MGP_AJ_G0033644.1 mouse_genomes_project 8 66141243 66176299 + MGP_AJ_P0089116 Ints10 protein_coding protein_coding MGP_AJ_T0089117.1 MGP_AJ_G0033644.1 mouse_genomes_project 8 66141249 66169434 + MGP_AJ_P0089117 Ints10 protein_coding protein_coding MGP_AJ_T0089118.1 MGP_AJ_G0033644.1 mouse_genomes_project 8 66141270 66146024 + Ints10 protein_coding retained_intron MGP_AJ_T0089119.1 MGP_AJ_G0033644.1 mouse_genomes_project 8 66141270 66176297 + MGP_AJ_P0089119 Ints10 protein_coding protein_coding MGP_AJ_T0089120.1 MGP_AJ_G0033644.1 mouse_genomes_project 8 66141288 66146024 + Ints10 protein_coding retained_intron MGP_AJ_T0089121.1 MGP_AJ_G0033644.1 mouse_genomes_project 8 66141329 66176297 + MGP_AJ_P0089121 Ints10 protein_coding protein_coding MGP_AJ_T0089122.1 MGP_AJ_G0033644.1 mouse_genomes_project 8 66159095 66161745 + Ints10 protein_coding retained_intron MGP_AJ_T0089123.1 MGP_AJ_G0033644.1 mouse_genomes_project 8 66167808 66174405 + MGP_AJ_P0089123 Ints10 protein_coding protein_coding MGP_AJ_T0005347.1 MGP_AJ_G0004530.1 mouse_genomes_project 8 31044139 31063913 + Gm26632 antisense antisense MGP_AJ_T0010945.1 MGP_AJ_G0009067.1 mouse_genomes_project 8 9608215 9608319 + Gm26483 miRNA miRNA MGP_AJ_T0011027.1 MGP_AJ_G0009149.1 mouse_genomes_project 8 123441300 123441357 + Gm22197 miRNA miRNA MGP_AJ_T0089724.1 MGP_AJ_G0033836.1 mouse_genomes_project 8 81611093 81641424 + MGP_AJ_P0089724 Rfx1 protein_coding protein_coding MGP_AJ_T0016006.1 MGP_AJ_G0014101.1 mouse_genomes_project 8 71253787 71254270 - processed_pseudogene processed_pseudogene MGP_AJ_T0005375.1 MGP_AJ_G0004555.1 mouse_genomes_project 8 96734648 96755437 + Gm15679 antisense antisense MGP_AJ_T0088651.1 MGP_AJ_G0033505.1 mouse_genomes_project 8 30847800 30870621 - MGP_AJ_P0088651 Ubxn8 protein_coding protein_coding MGP_AJ_T0100222.1 MGP_AJ_G0038188.1 mouse_genomes_project 8 82840754 82840861 + Gm22336 snRNA snRNA MGP_AJ_T0088979.1 MGP_AJ_G0033604.1 mouse_genomes_project 8 54769978 54791522 + MGP_AJ_P0088979 Scrg1 protein_coding protein_coding MGP_AJ_T0091091.1 MGP_AJ_G0034269.1 mouse_genomes_project 8 124165154 124310752 - MGP_AJ_P0091091 Pcnx2 protein_coding protein_coding MGP_AJ_T0091092.1 MGP_AJ_G0034269.1 mouse_genomes_project 8 124165155 124251822 - Pcnx2 protein_coding retained_intron MGP_AJ_T0091093.1 MGP_AJ_G0034269.1 mouse_genomes_project 8 124165157 124187815 - Pcnx2 protein_coding retained_intron MGP_AJ_T0091094.1 MGP_AJ_G0034269.1 mouse_genomes_project 8 124239378 124241249 - Pcnx2 protein_coding retained_intron MGP_AJ_T0091095.1 MGP_AJ_G0034269.1 mouse_genomes_project 8 124249578 124310752 - MGP_AJ_P0091095 Pcnx2 protein_coding protein_coding MGP_AJ_T0091096.1 MGP_AJ_G0034269.1 mouse_genomes_project 8 124273179 124310710 - Pcnx2 protein_coding processed_transcript MGP_AJ_T0091068.1 MGP_AJ_G0034261.1 mouse_genomes_project 8 123268945 123276353 - MGP_AJ_P0091068 Exoc8 protein_coding protein_coding MGP_AJ_T0101526.1 MGP_AJ_G0039492.1 mouse_genomes_project 8 121826284 121826398 + Gm25428 snoRNA snoRNA MGP_AJ_T0088361.1 MGP_AJ_G0033384.1 mouse_genomes_project 8 15503737 15712521 + MGP_AJ_P0088361 Mcph1 protein_coding protein_coding MGP_AJ_T0088362.1 MGP_AJ_G0033384.1 mouse_genomes_project 8 15503770 15621882 + MGP_AJ_P0088362 Mcph1 protein_coding nonsense_mediated_decay MGP_AJ_T0088363.1 MGP_AJ_G0033384.1 mouse_genomes_project 8 15504184 15598910 + Mcph1 protein_coding retained_intron MGP_AJ_T0088364.1 MGP_AJ_G0033384.1 mouse_genomes_project 8 15504190 15542076 + MGP_AJ_P0088364 Mcph1 protein_coding protein_coding MGP_AJ_T0088365.1 MGP_AJ_G0033384.1 mouse_genomes_project 8 15534737 15541055 + MGP_AJ_P0088365 Mcph1 protein_coding protein_coding MGP_AJ_T0088366.1 MGP_AJ_G0033384.1 mouse_genomes_project 8 15541766 15561944 + MGP_AJ_P0088366 Mcph1 protein_coding protein_coding MGP_AJ_T0090624.1 MGP_AJ_G0034131.1 mouse_genomes_project 8 110117885 110143875 - MGP_AJ_P0090624 Adat1 protein_coding protein_coding MGP_AJ_T0090625.1 MGP_AJ_G0034131.1 mouse_genomes_project 8 110123078 110143840 - MGP_AJ_P0090625 Adat1 protein_coding protein_coding MGP_AJ_T0088343.1 MGP_AJ_G0033380.1 mouse_genomes_project 8 12008107 12030398 + MGP_AJ_P0088343 Kbtbd11 protein_coding protein_coding MGP_AJ_T0088344.1 MGP_AJ_G0033380.1 mouse_genomes_project 8 12008398 12024158 + Kbtbd11 protein_coding processed_transcript MGP_AJ_T0088345.1 MGP_AJ_G0033380.1 mouse_genomes_project 8 12024354 12030398 + MGP_AJ_P0088345 Kbtbd11 protein_coding nonsense_mediated_decay MGP_AJ_T0088346.1 MGP_AJ_G0033380.1 mouse_genomes_project 8 12029454 12030029 + Kbtbd11 protein_coding processed_transcript MGP_AJ_T0089611.1 MGP_AJ_G0033795.1 mouse_genomes_project 8 77132291 77170357 + MGP_AJ_P0089611 Otud4 protein_coding protein_coding MGP_AJ_T0089612.1 MGP_AJ_G0033795.1 mouse_genomes_project 8 77132377 77170305 + MGP_AJ_P0089612 Otud4 protein_coding protein_coding MGP_AJ_T0089613.1 MGP_AJ_G0033795.1 mouse_genomes_project 8 77144003 77151853 + Otud4 protein_coding retained_intron MGP_AJ_T0089614.1 MGP_AJ_G0033795.1 mouse_genomes_project 8 77144415 77153876 + Otud4 protein_coding retained_intron MGP_AJ_T0089615.1 MGP_AJ_G0033795.1 mouse_genomes_project 8 77153716 77161122 + MGP_AJ_P0089615 Otud4 protein_coding protein_coding MGP_AJ_T0089616.1 MGP_AJ_G0033795.1 mouse_genomes_project 8 77159455 77164011 + MGP_AJ_P0089616 Otud4 protein_coding protein_coding MGP_AJ_T0088655.1 MGP_AJ_G0033507.1 mouse_genomes_project 8 30961292 31006726 + MGP_AJ_P0088655 Gtf2e2 protein_coding protein_coding MGP_AJ_T0088656.1 MGP_AJ_G0033507.1 mouse_genomes_project 8 30961501 31006726 + MGP_AJ_P0088656 Gtf2e2 protein_coding protein_coding MGP_AJ_T0088657.1 MGP_AJ_G0033507.1 mouse_genomes_project 8 30961592 30981908 + MGP_AJ_P0088657 Gtf2e2 protein_coding protein_coding MGP_AJ_T0088658.1 MGP_AJ_G0033507.1 mouse_genomes_project 8 30961770 30965515 + MGP_AJ_P0088658 Gtf2e2 protein_coding protein_coding MGP_AJ_T0088659.1 MGP_AJ_G0033507.1 mouse_genomes_project 8 30961798 31006735 + MGP_AJ_P0088659 Gtf2e2 protein_coding protein_coding MGP_AJ_T0088660.1 MGP_AJ_G0033507.1 mouse_genomes_project 8 30962903 30988412 + MGP_AJ_P0088660 Gtf2e2 protein_coding protein_coding MGP_AJ_T0088662.1 MGP_AJ_G0033507.1 mouse_genomes_project 8 30994776 31006340 + Gtf2e2 protein_coding processed_transcript MGP_AJ_T0091058.1 MGP_AJ_G0034257.1 mouse_genomes_project 8 123123704 123135186 - MGP_AJ_P0091058 Fam89a protein_coding protein_coding MGP_AJ_T0090273.1 MGP_AJ_G0034007.1 mouse_genomes_project 8 103058454 103061608 + Ces3b protein_coding retained_intron MGP_AJ_T0090276.1 MGP_AJ_G0034007.1 mouse_genomes_project 8 103058456 103068915 + MGP_AJ_P0090276 Ces3b protein_coding protein_coding MGP_AJ_T0090277.1 MGP_AJ_G0034007.1 mouse_genomes_project 8 103058462 103060233 + MGP_AJ_P0090277 Ces3b protein_coding unknown_likely_coding MGP_AJ_T0090278.1 MGP_AJ_G0034007.1 mouse_genomes_project 8 103058464 103068577 + MGP_AJ_P0090278 Ces3b protein_coding protein_coding MGP_AJ_T0090279.1 MGP_AJ_G0034007.1 mouse_genomes_project 8 103063604 103068109 + MGP_AJ_P0090279 Ces3b protein_coding nonsense_mediated_decay MGP_AJ_T0100227.1 MGP_AJ_G0038193.1 mouse_genomes_project 8 94907276 94907378 + Gm25160 snRNA snRNA MGP_AJ_T0005319.1 MGP_AJ_G0004510.1 mouse_genomes_project 8 164315 165253 + Gm16180 antisense antisense MGP_AJ_T0090881.1 MGP_AJ_G0034203.1 mouse_genomes_project 8 120745564 120747289 + MGP_AJ_P0090881 Il17c protein_coding protein_coding MGP_AJ_T0090709.1 MGP_AJ_G0034163.1 mouse_genomes_project 8 117751036 117774976 - MGP_AJ_P0090709 Slc38a8 protein_coding protein_coding MGP_AJ_T0090710.1 MGP_AJ_G0034163.1 mouse_genomes_project 8 117756957 117769286 - MGP_AJ_P0090710 Slc38a8 protein_coding protein_coding MGP_AJ_T0090711.1 MGP_AJ_G0034163.1 mouse_genomes_project 8 117757535 117767152 - Slc38a8 protein_coding retained_intron MGP_AJ_T0090712.1 MGP_AJ_G0034163.1 mouse_genomes_project 8 117766456 117774572 - MGP_AJ_P0090712 Slc38a8 protein_coding protein_coding MGP_AJ_T0090713.1 MGP_AJ_G0034163.1 mouse_genomes_project 8 117768383 117774973 - MGP_AJ_P0090713 Slc38a8 protein_coding protein_coding MGP_AJ_T0005336.1 MGP_AJ_G0004523.1 mouse_genomes_project 8 13180453 13186757 + Gm16346 antisense antisense MGP_AJ_T0088901.1 MGP_AJ_G0033576.1 mouse_genomes_project 8 44529031 44704936 - MGP_AJ_P0088901 Stox2 protein_coding protein_coding MGP_AJ_T0088902.1 MGP_AJ_G0033576.1 mouse_genomes_project 8 44529031 44641580 - MGP_AJ_P0088902 Stox2 protein_coding protein_coding MGP_AJ_T0090129.1 MGP_AJ_G0033952.1 mouse_genomes_project 8 92499391 92500974 + MGP_AJ_P0090129 Ccl17 protein_coding protein_coding MGP_AJ_T0101465.1 MGP_AJ_G0039431.1 mouse_genomes_project 8 13808167 13808287 + Gm25278 snoRNA snoRNA MGP_AJ_T0088479.1 MGP_AJ_G0033443.1 mouse_genomes_project 8 20372065 20408673 - MGP_AJ_P0088479 Gpat4 protein_coding protein_coding MGP_AJ_T0101527.1 MGP_AJ_G0039493.1 mouse_genomes_project 8 125380344 125380478 - Gm26397 snoRNA snoRNA MGP_AJ_T0089479.1 MGP_AJ_G0033747.1 mouse_genomes_project 8 69394726 69407463 + MGP_AJ_P0089479 Zfp709 protein_coding protein_coding MGP_AJ_T0089480.1 MGP_AJ_G0033747.1 mouse_genomes_project 8 69394788 69399778 + MGP_AJ_P0089480 Zfp709 protein_coding protein_coding MGP_AJ_T0089481.1 MGP_AJ_G0033747.1 mouse_genomes_project 8 69395074 69395441 + Zfp709 protein_coding processed_transcript MGP_AJ_T0090525.1 MGP_AJ_G0034104.1 mouse_genomes_project 8 108705386 108807472 + MGP_AJ_P0090525 Vac14 protein_coding protein_coding MGP_AJ_T0089606.1 MGP_AJ_G0033792.1 mouse_genomes_project 8 76686393 76724769 - MGP_AJ_P0089606 1700011L22Rik protein_coding protein_coding MGP_AJ_T0090235.1 MGP_AJ_G0033992.1 mouse_genomes_project 8 102356387 102416142 - MGP_AJ_P0090235 Terb1 protein_coding protein_coding MGP_AJ_T0090236.1 MGP_AJ_G0033992.1 mouse_genomes_project 8 102356705 102416138 - MGP_AJ_P0090236 Terb1 protein_coding nonsense_mediated_decay MGP_AJ_T0090237.1 MGP_AJ_G0033992.1 mouse_genomes_project 8 102356706 102416137 - MGP_AJ_P0090237 Terb1 protein_coding nonsense_mediated_decay MGP_AJ_T0090238.1 MGP_AJ_G0033992.1 mouse_genomes_project 8 102357543 102416165 - MGP_AJ_P0090238 Terb1 protein_coding protein_coding MGP_AJ_T0088481.1 MGP_AJ_G0033445.1 mouse_genomes_project 8 20442735 20457894 - MGP_AJ_P0088481 Golga7 protein_coding protein_coding MGP_AJ_T0088482.1 MGP_AJ_G0033445.1 mouse_genomes_project 8 20443236 20446030 - Golga7 protein_coding retained_intron MGP_AJ_T0089566.1 MGP_AJ_G0033781.1 mouse_genomes_project 8 74362594 74371537 + MGP_AJ_P0089566 Nr3c2 protein_coding protein_coding MGP_AJ_T0089567.1 MGP_AJ_G0033781.1 mouse_genomes_project 8 74363341 74705806 + MGP_AJ_P0089567 Nr3c2 protein_coding unknown_likely_coding MGP_AJ_T0089568.1 MGP_AJ_G0033781.1 mouse_genomes_project 8 74365430 74703784 + MGP_AJ_P0089568 Nr3c2 protein_coding nonsense_mediated_decay MGP_AJ_T0089569.1 MGP_AJ_G0033781.1 mouse_genomes_project 8 74365489 74371780 + MGP_AJ_P0089569 Nr3c2 protein_coding protein_coding MGP_AJ_T0089570.1 MGP_AJ_G0033781.1 mouse_genomes_project 8 74365618 74704451 + MGP_AJ_P0089570 Nr3c2 protein_coding protein_coding MGP_AJ_T0089571.1 MGP_AJ_G0033781.1 mouse_genomes_project 8 74371395 74703318 + MGP_AJ_P0089571 Nr3c2 protein_coding protein_coding MGP_AJ_T0089572.1 MGP_AJ_G0033781.1 mouse_genomes_project 8 74592259 74646958 + Nr3c2 protein_coding processed_transcript MGP_AJ_T0005358.1 MGP_AJ_G0004540.1 mouse_genomes_project 8 58415849 58490832 - Gm16178 antisense antisense MGP_AJ_T0089953.1 MGP_AJ_G0033895.1 mouse_genomes_project 8 85006677 85010414 - MGP_AJ_P0089953 Cbln1 protein_coding protein_coding MGP_AJ_T0089954.1 MGP_AJ_G0033895.1 mouse_genomes_project 8 85007061 85010208 - MGP_AJ_P0089954 Cbln1 protein_coding protein_coding MGP_AJ_T0088425.1 MGP_AJ_G0033426.1 mouse_genomes_project 8 19358209 19375872 - MGP_AJ_P0088425 Ckap2 protein_coding protein_coding MGP_AJ_T0009206.1 MGP_AJ_G0007394.1 mouse_genomes_project 8 120172790 120173602 - lincRNA lincRNA MGP_AJ_T0089526.1 MGP_AJ_G0033765.1 mouse_genomes_project 8 69994517 70009285 - MGP_AJ_P0089526 Cherp protein_coding protein_coding MGP_AJ_T0011002.1 MGP_AJ_G0009124.1 mouse_genomes_project 8 103285548 103285657 - Gm27320 miRNA miRNA MGP_AJ_T0090883.1 MGP_AJ_G0034205.1 mouse_genomes_project 8 120757338 120768252 - MGP_AJ_P0090883 Mvd protein_coding protein_coding MGP_AJ_T0009090.1 MGP_AJ_G0007309.1 mouse_genomes_project 8 25854335 25856435 + Gm26795 lincRNA lincRNA MGP_AJ_T0009091.1 MGP_AJ_G0007309.1 mouse_genomes_project 8 25854362 25855139 + Gm26795 lincRNA lincRNA MGP_AJ_T0090315.1 MGP_AJ_G0034021.1 mouse_genomes_project 8 103304760 103307464 + MGP_AJ_P0090315 Tmem208 protein_coding protein_coding MGP_AJ_T0090316.1 MGP_AJ_G0034021.1 mouse_genomes_project 8 103304768 103307462 + MGP_AJ_P0090316 Tmem208 protein_coding nonsense_mediated_decay MGP_AJ_T0090317.1 MGP_AJ_G0034021.1 mouse_genomes_project 8 103304794 103307459 + MGP_AJ_P0090317 Tmem208 protein_coding nonsense_mediated_decay MGP_AJ_T0090318.1 MGP_AJ_G0034021.1 mouse_genomes_project 8 103304801 103313606 + MGP_AJ_P0090318 Tmem208 protein_coding protein_coding MGP_AJ_T0090319.1 MGP_AJ_G0034021.1 mouse_genomes_project 8 103304861 103313188 + MGP_AJ_P0090319 Tmem208 protein_coding nonsense_mediated_decay MGP_AJ_T0005357.1 MGP_AJ_G0004539.1 mouse_genomes_project 8 55832511 55833544 + Gm15882 antisense antisense MGP_AJ_T0090646.1 MGP_AJ_G0034139.1 mouse_genomes_project 8 112374113 112400325 + Vat1l protein_coding processed_transcript MGP_AJ_T0090647.1 MGP_AJ_G0034139.1 mouse_genomes_project 8 112374131 112576015 + MGP_AJ_P0090647 Vat1l protein_coding protein_coding MGP_AJ_T0090648.1 MGP_AJ_G0034139.1 mouse_genomes_project 8 112374135 112400319 + MGP_AJ_P0090648 Vat1l protein_coding protein_coding MGP_AJ_T0090649.1 MGP_AJ_G0034139.1 mouse_genomes_project 8 112570059 112576014 + Vat1l protein_coding retained_intron MGP_AJ_T0098481.1 MGP_AJ_G0036465.1 mouse_genomes_project 8 92653993 92659081 - pseudogene pseudogene MGP_AJ_T0016014.1 MGP_AJ_G0014109.1 mouse_genomes_project 8 78696593 78697181 - processed_pseudogene processed_pseudogene MGP_AJ_T0088635.1 MGP_AJ_G0033496.1 mouse_genomes_project 8 28411238 28491701 + MGP_AJ_P0088635 Fut10 protein_coding protein_coding MGP_AJ_T0088636.1 MGP_AJ_G0033496.1 mouse_genomes_project 8 28411242 28462444 + MGP_AJ_P0088636 Fut10 protein_coding protein_coding MGP_AJ_T0088637.1 MGP_AJ_G0033496.1 mouse_genomes_project 8 28425857 28460677 + Fut10 protein_coding processed_transcript MGP_AJ_T0089911.1 MGP_AJ_G0033883.1 mouse_genomes_project 8 82849931 82886870 - MGP_AJ_P0089911 Mylk3 protein_coding protein_coding MGP_AJ_T0089912.1 MGP_AJ_G0033883.1 mouse_genomes_project 8 82850075 82903049 - MGP_AJ_P0089912 Mylk3 protein_coding protein_coding MGP_AJ_T0089913.1 MGP_AJ_G0033883.1 mouse_genomes_project 8 82852682 82886893 - MGP_AJ_P0089913 Mylk3 protein_coding protein_coding MGP_AJ_T0089914.1 MGP_AJ_G0033883.1 mouse_genomes_project 8 82879882 82908408 - MGP_AJ_P0089914 Mylk3 protein_coding protein_coding MGP_AJ_T0089915.1 MGP_AJ_G0033883.1 mouse_genomes_project 8 82881057 82903105 - Mylk3 protein_coding retained_intron MGP_AJ_T0088384.1 MGP_AJ_G0033395.1 mouse_genomes_project 8 16071058 16072748 + MGP_AJ_P0088384 Spag11a protein_coding protein_coding MGP_AJ_T0011712.1 MGP_AJ_G0009834.1 mouse_genomes_project 8 8624840 8625084 - Gm27854 misc_RNA misc_RNA MGP_AJ_T0088385.1 MGP_AJ_G0033396.1 mouse_genomes_project 8 16103122 16103978 + MGP_AJ_P0088385 Defb14 protein_coding protein_coding MGP_AJ_T0088699.1 MGP_AJ_G0033522.1 mouse_genomes_project 8 33373293 33429599 + MGP_AJ_P0088699 D8Ertd82e protein_coding protein_coding MGP_AJ_T0088700.1 MGP_AJ_G0033522.1 mouse_genomes_project 8 33373326 33385123 + D8Ertd82e protein_coding retained_intron MGP_AJ_T0088701.1 MGP_AJ_G0033522.1 mouse_genomes_project 8 33373326 33381260 + D8Ertd82e protein_coding retained_intron MGP_AJ_T0100237.1 MGP_AJ_G0038203.1 mouse_genomes_project 8 110216487 110216594 + Gm22827 snRNA snRNA MGP_AJ_T0088872.1 MGP_AJ_G0033569.1 mouse_genomes_project 8 43631195 43633817 - MGP_AJ_P0088872 Helt protein_coding protein_coding MGP_AJ_T0090824.1 MGP_AJ_G0034193.1 mouse_genomes_project 8 119895972 119898605 + Map1lc3b protein_coding retained_intron MGP_AJ_T0090825.1 MGP_AJ_G0034193.1 mouse_genomes_project 8 119895976 119921482 + Map1lc3b protein_coding retained_intron MGP_AJ_T0090826.1 MGP_AJ_G0034193.1 mouse_genomes_project 8 119895979 119912991 + MGP_AJ_P0090826 Map1lc3b protein_coding protein_coding MGP_AJ_T0090827.1 MGP_AJ_G0034193.1 mouse_genomes_project 8 119896020 119912991 + MGP_AJ_P0090827 Map1lc3b protein_coding unknown_likely_coding MGP_AJ_T0010981.1 MGP_AJ_G0009103.1 mouse_genomes_project 8 81723183 81723255 - Mir181d miRNA miRNA MGP_AJ_T0009158.1 MGP_AJ_G0007361.1 mouse_genomes_project 8 89463273 89470754 + Gm28511 lincRNA lincRNA MGP_AJ_T0090147.1 MGP_AJ_G0033955.1 mouse_genomes_project 8 92545923 92552697 + MGP_AJ_P0090147 Polr2c protein_coding protein_coding MGP_AJ_T0009107.1 MGP_AJ_G0007322.1 mouse_genomes_project 8 44084730 44093284 - lincRNA lincRNA MGP_AJ_T0002329.1 MGP_AJ_G0002240.1 mouse_genomes_project 8 20408731 20409582 + TEC TEC MGP_AJ_T0010974.1 MGP_AJ_G0009096.1 mouse_genomes_project 8 70522686 70522766 + Mir28b miRNA miRNA MGP_AJ_T0090706.1 MGP_AJ_G0034162.1 mouse_genomes_project 8 117717263 117743180 + MGP_AJ_P0090706 Necab2 protein_coding protein_coding MGP_AJ_T0090707.1 MGP_AJ_G0034162.1 mouse_genomes_project 8 117717305 117742951 + Necab2 protein_coding processed_transcript MGP_AJ_T0090708.1 MGP_AJ_G0034162.1 mouse_genomes_project 8 117722975 117741485 + MGP_AJ_P0090708 Necab2 protein_coding protein_coding MGP_AJ_T0088078.1 MGP_AJ_G0033298.1 mouse_genomes_project 8 592604 597554 + MGP_AJ_P0088078 Trappc5 protein_coding protein_coding MGP_AJ_T0009089.1 MGP_AJ_G0007308.1 mouse_genomes_project 8 24867905 24884586 + Gm1698 lincRNA lincRNA MGP_AJ_T0088163.1 MGP_AJ_G0033325.1 mouse_genomes_project 8 6758105 6764141 + MGP_AJ_P0088163 Gm10217 protein_coding protein_coding MGP_AJ_T0009166.1 MGP_AJ_G0007365.1 mouse_genomes_project 8 89939340 89941791 - Gm21817 lincRNA lincRNA MGP_AJ_T0090458.1 MGP_AJ_G0034078.1 mouse_genomes_project 8 105178773 105215814 + MGP_AJ_P0090458 Cyb5b protein_coding protein_coding MGP_AJ_T0088630.1 MGP_AJ_G0033493.1 mouse_genomes_project 8 28335942 28355960 + MGP_AJ_P0088630 Rnf122 protein_coding protein_coding MGP_AJ_T0088631.1 MGP_AJ_G0033493.1 mouse_genomes_project 8 28335952 28346167 + Rnf122 protein_coding retained_intron MGP_AJ_T0088632.1 MGP_AJ_G0033493.1 mouse_genomes_project 8 28336270 28353164 + MGP_AJ_P0088632 Rnf122 protein_coding unknown_likely_coding MGP_AJ_T0089358.1 MGP_AJ_G0033714.1 mouse_genomes_project 8 68268316 68270618 + MGP_AJ_P0089358 protein_coding protein_coding MGP_AJ_T0090149.1 MGP_AJ_G0033957.1 mouse_genomes_project 8 92592115 92607339 - MGP_AJ_P0090149 Ccdc102a protein_coding protein_coding MGP_AJ_T0090150.1 MGP_AJ_G0033957.1 mouse_genomes_project 8 92602806 92606763 - MGP_AJ_P0090150 Ccdc102a protein_coding protein_coding MGP_AJ_T0090330.1 MGP_AJ_G0034025.1 mouse_genomes_project 8 103361331 103392224 - MGP_AJ_P0090330 Kctd19 protein_coding protein_coding MGP_AJ_T0090331.1 MGP_AJ_G0034025.1 mouse_genomes_project 8 103361331 103392224 - MGP_AJ_P0090331 Kctd19 protein_coding protein_coding MGP_AJ_T0090332.1 MGP_AJ_G0034025.1 mouse_genomes_project 8 103361466 103363856 - MGP_AJ_P0090332 Kctd19 protein_coding protein_coding MGP_AJ_T0090333.1 MGP_AJ_G0034025.1 mouse_genomes_project 8 103372387 103392178 - MGP_AJ_P0090333 Kctd19 protein_coding nonsense_mediated_decay MGP_AJ_T0018458.1 MGP_AJ_G0015691.1 mouse_genomes_project 8 43062231 43076943 + processed_transcript processed_transcript MGP_AJ_T0005348.1 MGP_AJ_G0004531.1 mouse_genomes_project 8 38350668 38352936 + Gm16192 antisense antisense MGP_AJ_T0011011.1 MGP_AJ_G0009133.1 mouse_genomes_project 8 109126976 109127057 - Mir3473d miRNA miRNA MGP_AJ_T0088980.1 MGP_AJ_G0033605.1 mouse_genomes_project 8 54796640 54801795 - MGP_AJ_P0088980 Sap30 protein_coding protein_coding MGP_AJ_T0101523.1 MGP_AJ_G0039489.1 mouse_genomes_project 8 116988017 116988105 + Gm22999 snoRNA snoRNA MGP_AJ_T0100246.1 MGP_AJ_G0038212.1 mouse_genomes_project 8 127117056 127117163 + Gm26002 snRNA snRNA MGP_AJ_T0009198.1 MGP_AJ_G0007388.1 mouse_genomes_project 8 119555911 119663945 - Gm26815 lincRNA lincRNA MGP_AJ_T0090526.1 MGP_AJ_G0034105.1 mouse_genomes_project 8 108808551 108828598 + MGP_AJ_P0090526 Mtss1l protein_coding protein_coding MGP_AJ_T0090527.1 MGP_AJ_G0034105.1 mouse_genomes_project 8 108808797 108829068 + MGP_AJ_P0090527 Mtss1l protein_coding protein_coding MGP_AJ_T0090528.1 MGP_AJ_G0034105.1 mouse_genomes_project 8 108813504 108819146 + Mtss1l protein_coding processed_transcript MGP_AJ_T0090529.1 MGP_AJ_G0034105.1 mouse_genomes_project 8 108814433 108824851 + MGP_AJ_P0090529 Mtss1l protein_coding protein_coding MGP_AJ_T0090530.1 MGP_AJ_G0034105.1 mouse_genomes_project 8 108814444 108825271 + MGP_AJ_P0090530 Mtss1l protein_coding protein_coding MGP_AJ_T0090531.1 MGP_AJ_G0034105.1 mouse_genomes_project 8 108824314 108825579 + Mtss1l protein_coding retained_intron MGP_AJ_T0090557.1 MGP_AJ_G0034111.1 mouse_genomes_project 8 109082121 109106730 - MGP_AJ_P0090557 Ddx19a protein_coding protein_coding MGP_AJ_T0090558.1 MGP_AJ_G0034111.1 mouse_genomes_project 8 109082989 109106653 - MGP_AJ_P0090558 Ddx19a protein_coding unknown_likely_coding MGP_AJ_T0090559.1 MGP_AJ_G0034111.1 mouse_genomes_project 8 109086241 109088421 - Ddx19a protein_coding retained_intron MGP_AJ_T0090560.1 MGP_AJ_G0034111.1 mouse_genomes_project 8 109088259 109106700 - Ddx19a protein_coding retained_intron MGP_AJ_T0009181.1 MGP_AJ_G0007375.1 mouse_genomes_project 8 104593291 104601745 + 1110028F18Rik lincRNA lincRNA MGP_AJ_T0091099.1 MGP_AJ_G0034272.1 mouse_genomes_project 8 124715889 124814130 + MGP_AJ_P0091099 Slc35f3 protein_coding protein_coding MGP_AJ_T0009106.1 MGP_AJ_G0007321.1 mouse_genomes_project 8 42926851 42935493 - lincRNA lincRNA MGP_AJ_T0089618.1 MGP_AJ_G0033797.1 mouse_genomes_project 8 77205275 77261139 + MGP_AJ_P0089618 Anapc10 protein_coding unknown_likely_coding MGP_AJ_T0090218.1 MGP_AJ_G0033980.1 mouse_genomes_project 8 100378534 100447086 - MGP_AJ_P0090218 Cdh11 protein_coding unknown_likely_coding MGP_AJ_T0091100.1 MGP_AJ_G0034273.1 mouse_genomes_project 8 124834667 124837602 + MGP_AJ_P0091100 Coa6 protein_coding protein_coding MGP_AJ_T0089943.1 MGP_AJ_G0033891.1 mouse_genomes_project 8 84161333 84250366 + MGP_AJ_P0089943 Lonp2 protein_coding protein_coding MGP_AJ_T0089944.1 MGP_AJ_G0033891.1 mouse_genomes_project 8 84161333 84257609 + MGP_AJ_P0089944 Lonp2 protein_coding nonsense_mediated_decay MGP_AJ_T0089945.1 MGP_AJ_G0033891.1 mouse_genomes_project 8 84161377 84178951 + Lonp2 protein_coding processed_transcript MGP_AJ_T0089946.1 MGP_AJ_G0033891.1 mouse_genomes_project 8 84161395 84250366 + MGP_AJ_P0089946 Lonp2 protein_coding protein_coding MGP_AJ_T0089947.1 MGP_AJ_G0033891.1 mouse_genomes_project 8 84168681 84205581 + Lonp2 protein_coding processed_transcript MGP_AJ_T0089948.1 MGP_AJ_G0033891.1 mouse_genomes_project 8 84188853 84250367 + MGP_AJ_P0089948 Lonp2 protein_coding protein_coding MGP_AJ_T0089949.1 MGP_AJ_G0033891.1 mouse_genomes_project 8 84188853 84250367 + MGP_AJ_P0089949 Lonp2 protein_coding protein_coding MGP_AJ_T0088411.1 MGP_AJ_G0033421.1 mouse_genomes_project 8 19165251 19169518 + MGP_AJ_P0088411 Ccdc70 protein_coding protein_coding MGP_AJ_T0088412.1 MGP_AJ_G0033421.1 mouse_genomes_project 8 19166079 19169542 + MGP_AJ_P0088412 Ccdc70 protein_coding protein_coding MGP_AJ_T0089662.1 MGP_AJ_G0033816.1 mouse_genomes_project 8 81094723 81099610 + MGP_AJ_P0089662 Ndufb7 protein_coding protein_coding MGP_AJ_T0089663.1 MGP_AJ_G0033816.1 mouse_genomes_project 8 81094810 81099610 + Ndufb7 protein_coding retained_intron MGP_AJ_T0089884.1 MGP_AJ_G0033874.1 mouse_genomes_project 8 82615997 82616412 - MGP_AJ_P0089884 Gm5741 protein_coding protein_coding MGP_AJ_T0088746.1 MGP_AJ_G0033535.1 mouse_genomes_project 8 37855198 37935677 - MGP_AJ_P0088746 Mtmr7 protein_coding nonsense_mediated_decay MGP_AJ_T0088747.1 MGP_AJ_G0033535.1 mouse_genomes_project 8 37855204 37935664 - MGP_AJ_P0088747 Mtmr7 protein_coding protein_coding MGP_AJ_T0088748.1 MGP_AJ_G0033535.1 mouse_genomes_project 8 37857982 37890805 - MGP_AJ_P0088748 Mtmr7 protein_coding protein_coding MGP_AJ_T0088749.1 MGP_AJ_G0033535.1 mouse_genomes_project 8 37858789 37935680 - MGP_AJ_P0088749 Mtmr7 protein_coding protein_coding MGP_AJ_T0088750.1 MGP_AJ_G0033535.1 mouse_genomes_project 8 37868162 37935647 - MGP_AJ_P0088750 Mtmr7 protein_coding protein_coding MGP_AJ_T0088751.1 MGP_AJ_G0033535.1 mouse_genomes_project 8 37907156 37935685 - Mtmr7 protein_coding processed_transcript MGP_AJ_T0090626.1 MGP_AJ_G0034132.1 mouse_genomes_project 8 110145012 110163456 - MGP_AJ_P0090626 Kars protein_coding protein_coding MGP_AJ_T0090627.1 MGP_AJ_G0034132.1 mouse_genomes_project 8 110145016 110163491 - MGP_AJ_P0090627 Kars protein_coding protein_coding MGP_AJ_T0090628.1 MGP_AJ_G0034132.1 mouse_genomes_project 8 110145016 110163434 - MGP_AJ_P0090628 Kars protein_coding protein_coding MGP_AJ_T0088763.1 MGP_AJ_G0033542.1 mouse_genomes_project 8 38300973 38447295 - MGP_AJ_P0088763 Mtus1 protein_coding protein_coding MGP_AJ_T0088764.1 MGP_AJ_G0033542.1 mouse_genomes_project 8 38300977 38428381 - MGP_AJ_P0088764 Mtus1 protein_coding protein_coding MGP_AJ_T0088765.1 MGP_AJ_G0033542.1 mouse_genomes_project 8 38300977 38365728 - MGP_AJ_P0088765 Mtus1 protein_coding protein_coding MGP_AJ_T0088766.1 MGP_AJ_G0033542.1 mouse_genomes_project 8 38301111 38352749 - MGP_AJ_P0088766 Mtus1 protein_coding protein_coding MGP_AJ_T0088767.1 MGP_AJ_G0033542.1 mouse_genomes_project 8 38308804 38310240 - Mtus1 protein_coding retained_intron MGP_AJ_T0088768.1 MGP_AJ_G0033542.1 mouse_genomes_project 8 38310710 38327688 - Mtus1 protein_coding processed_transcript MGP_AJ_T0088769.1 MGP_AJ_G0033542.1 mouse_genomes_project 8 38310867 38327702 - MGP_AJ_P0088769 Mtus1 protein_coding protein_coding MGP_AJ_T0088770.1 MGP_AJ_G0033542.1 mouse_genomes_project 8 38312386 38327253 - MGP_AJ_P0088770 Mtus1 protein_coding protein_coding MGP_AJ_T0088771.1 MGP_AJ_G0033542.1 mouse_genomes_project 8 38325273 38350500 - Mtus1 protein_coding processed_transcript MGP_AJ_T0088772.1 MGP_AJ_G0033542.1 mouse_genomes_project 8 38329897 38365717 - Mtus1 protein_coding processed_transcript MGP_AJ_T0088773.1 MGP_AJ_G0033542.1 mouse_genomes_project 8 38330458 38333791 - Mtus1 protein_coding retained_intron MGP_AJ_T0088774.1 MGP_AJ_G0033542.1 mouse_genomes_project 8 38360971 38396358 - MGP_AJ_P0088774 Mtus1 protein_coding protein_coding MGP_AJ_T0088775.1 MGP_AJ_G0033542.1 mouse_genomes_project 8 38361086 38447295 - MGP_AJ_P0088775 Mtus1 protein_coding protein_coding MGP_AJ_T0088776.1 MGP_AJ_G0033542.1 mouse_genomes_project 8 38398144 38447287 - MGP_AJ_P0088776 Mtus1 protein_coding protein_coding MGP_AJ_T0018493.1 MGP_AJ_G0015703.1 mouse_genomes_project 8 107983910 107992075 + Gm16349 processed_transcript processed_transcript MGP_AJ_T0102922.1 MGP_AJ_G0040662.1 mouse_genomes_project 8 16461384 16463264 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0090262.1 MGP_AJ_G0034000.1 mouse_genomes_project 8 102759116 102772406 + MGP_AJ_P0090262 Ces2b protein_coding protein_coding MGP_AJ_T0016017.1 MGP_AJ_G0014112.1 mouse_genomes_project 8 79352702 79354316 + processed_pseudogene processed_pseudogene MGP_AJ_T0010958.1 MGP_AJ_G0009080.1 mouse_genomes_project 8 31390354 31390445 - Mir6395 miRNA miRNA MGP_AJ_T0011006.1 MGP_AJ_G0009128.1 mouse_genomes_project 8 105122082 105122164 - Mir7075 miRNA miRNA MGP_AJ_T0090380.1 MGP_AJ_G0034047.1 mouse_genomes_project 8 103893697 103929813 + MGP_AJ_P0090380 Pskh1 protein_coding protein_coding MGP_AJ_T0088080.1 MGP_AJ_G0033300.1 mouse_genomes_project 8 623334 634559 - MGP_AJ_P0088080 Clec4g protein_coding protein_coding MGP_AJ_T0088081.1 MGP_AJ_G0033300.1 mouse_genomes_project 8 633069 637657 - MGP_AJ_P0088081 Clec4g protein_coding protein_coding MGP_AJ_T0088082.1 MGP_AJ_G0033300.1 mouse_genomes_project 8 634219 635659 - Clec4g protein_coding retained_intron MGP_AJ_T0089327.1 MGP_AJ_G0033699.1 mouse_genomes_project 8 68029143 68031846 - MGP_AJ_P0089327 Gdf15 protein_coding protein_coding MGP_AJ_T0089328.1 MGP_AJ_G0033699.1 mouse_genomes_project 8 68029144 68032207 - MGP_AJ_P0089328 Gdf15 protein_coding protein_coding MGP_AJ_T0091104.1 MGP_AJ_G0034277.1 mouse_genomes_project 8 125382663 125406704 - MGP_AJ_P0091104 Rbm34 protein_coding protein_coding MGP_AJ_T0009078.1 MGP_AJ_G0007300.1 mouse_genomes_project 8 9648801 9661988 - Gm15348 lincRNA lincRNA MGP_AJ_T0089722.1 MGP_AJ_G0033834.1 mouse_genomes_project 8 81607811 81609390 - MGP_AJ_P0089722 Gm10643 protein_coding protein_coding MGP_AJ_T0089820.1 MGP_AJ_G0033859.1 mouse_genomes_project 8 82417411 82432915 + MGP_AJ_P0089820 Syce2 protein_coding protein_coding MGP_AJ_T0089821.1 MGP_AJ_G0033859.1 mouse_genomes_project 8 82417411 82433680 + MGP_AJ_P0089821 Syce2 protein_coding protein_coding MGP_AJ_T0089822.1 MGP_AJ_G0033859.1 mouse_genomes_project 8 82417491 82432925 + MGP_AJ_P0089822 Syce2 protein_coding nonsense_mediated_decay MGP_AJ_T0089823.1 MGP_AJ_G0033859.1 mouse_genomes_project 8 82417736 82431450 + Syce2 protein_coding retained_intron MGP_AJ_T0088623.1 MGP_AJ_G0033490.1 mouse_genomes_project 8 25908177 26474252 - MGP_AJ_P0088623 Unc5d protein_coding protein_coding MGP_AJ_T0090650.1 MGP_AJ_G0034140.1 mouse_genomes_project 8 112614520 112622050 + MGP_AJ_P0090650 Clec3a protein_coding protein_coding MGP_AJ_T0090779.1 MGP_AJ_G0034184.1 mouse_genomes_project 8 118938815 118953092 - MGP_AJ_P0090779 Emc8 protein_coding protein_coding MGP_AJ_T0090780.1 MGP_AJ_G0034184.1 mouse_genomes_project 8 118940879 118953126 - Emc8 protein_coding retained_intron MGP_AJ_T0090781.1 MGP_AJ_G0034184.1 mouse_genomes_project 8 118942752 118953687 - MGP_AJ_P0090781 Emc8 protein_coding nonsense_mediated_decay MGP_AJ_T0090782.1 MGP_AJ_G0034184.1 mouse_genomes_project 8 118942925 118952877 - MGP_AJ_P0090782 Emc8 protein_coding protein_coding MGP_AJ_T0090783.1 MGP_AJ_G0034184.1 mouse_genomes_project 8 118942951 118952950 - MGP_AJ_P0090783 Emc8 protein_coding protein_coding MGP_AJ_T0090784.1 MGP_AJ_G0034184.1 mouse_genomes_project 8 118944875 118953117 - MGP_AJ_P0090784 Emc8 protein_coding protein_coding MGP_AJ_T0090785.1 MGP_AJ_G0034184.1 mouse_genomes_project 8 118945548 118953227 - Emc8 protein_coding retained_intron MGP_AJ_T0018443.1 MGP_AJ_G0015682.1 mouse_genomes_project 8 1096320 1141523 - 4932443L11Rik processed_transcript processed_transcript MGP_AJ_T0018444.1 MGP_AJ_G0015682.1 mouse_genomes_project 8 1111897 1140928 - 4932443L11Rik processed_transcript processed_transcript MGP_AJ_T0089813.1 MGP_AJ_G0033857.1 mouse_genomes_project 8 82398760 82399875 - MGP_AJ_P0089813 protein_coding protein_coding MGP_AJ_T0090691.1 MGP_AJ_G0034158.1 mouse_genomes_project 8 116532399 117591573 + MGP_AJ_P0090691 Cdh13 protein_coding protein_coding MGP_AJ_T0090692.1 MGP_AJ_G0034158.1 mouse_genomes_project 8 116532421 117113356 + Cdh13 protein_coding retained_intron MGP_AJ_T0090693.1 MGP_AJ_G0034158.1 mouse_genomes_project 8 116532441 117233405 + Cdh13 protein_coding retained_intron MGP_AJ_T0090694.1 MGP_AJ_G0034158.1 mouse_genomes_project 8 116532462 117021711 + Cdh13 protein_coding retained_intron MGP_AJ_T0090695.1 MGP_AJ_G0034158.1 mouse_genomes_project 8 116532463 117467706 + Cdh13 protein_coding retained_intron MGP_AJ_T0090696.1 MGP_AJ_G0034158.1 mouse_genomes_project 8 116564966 117117679 + Cdh13 protein_coding processed_transcript MGP_AJ_T0090697.1 MGP_AJ_G0034158.1 mouse_genomes_project 8 117544256 117580765 + Cdh13 protein_coding processed_transcript MGP_AJ_T0090297.1 MGP_AJ_G0034012.1 mouse_genomes_project 8 103236261 103242568 - MGP_AJ_P0090297 Tradd protein_coding protein_coding MGP_AJ_T0090298.1 MGP_AJ_G0034012.1 mouse_genomes_project 8 103237165 103238096 - Tradd protein_coding retained_intron MGP_AJ_T0090299.1 MGP_AJ_G0034012.1 mouse_genomes_project 8 103237258 103242540 - MGP_AJ_P0090299 Tradd protein_coding nonsense_mediated_decay MGP_AJ_T0090300.1 MGP_AJ_G0034012.1 mouse_genomes_project 8 103237732 103242562 - MGP_AJ_P0090300 Tradd protein_coding nonsense_mediated_decay MGP_AJ_T0088437.1 MGP_AJ_G0033433.1 mouse_genomes_project 8 19669867 19757593 + MGP_AJ_P0088437 Slc20a2 protein_coding protein_coding MGP_AJ_T0099099.1 MGP_AJ_G0037071.1 mouse_genomes_project 8 65178275 65178665 - sense_intronic sense_intronic MGP_AJ_T0090609.1 MGP_AJ_G0034122.1 mouse_genomes_project 8 109767277 109772080 - Ldhd protein_coding retained_intron MGP_AJ_T0090610.1 MGP_AJ_G0034122.1 mouse_genomes_project 8 109768995 109773828 - Ldhd protein_coding retained_intron MGP_AJ_T0090611.1 MGP_AJ_G0034122.1 mouse_genomes_project 8 109770517 109774557 - MGP_AJ_P0090611 Ldhd protein_coding unknown_likely_coding MGP_AJ_T0101499.1 MGP_AJ_G0039465.1 mouse_genomes_project 8 68301466 68301597 - Snora68 snoRNA snoRNA MGP_AJ_T0089055.1 MGP_AJ_G0033622.1 mouse_genomes_project 8 61201806 61230056 - MGP_AJ_P0089055 Sgol2b protein_coding protein_coding MGP_AJ_T0088429.1 MGP_AJ_G0033428.1 mouse_genomes_project 8 19419195 19453784 + MGP_AJ_P0088429 Thsd1 protein_coding protein_coding MGP_AJ_T0088430.1 MGP_AJ_G0033428.1 mouse_genomes_project 8 19419227 19452830 + MGP_AJ_P0088430 Thsd1 protein_coding protein_coding MGP_AJ_T0088431.1 MGP_AJ_G0033428.1 mouse_genomes_project 8 19419244 19452828 + Thsd1 protein_coding processed_transcript MGP_AJ_T0089908.1 MGP_AJ_G0033881.1 mouse_genomes_project 8 82783485 82821046 - MGP_AJ_P0089908 Vps35 protein_coding unknown_likely_coding MGP_AJ_T0089909.1 MGP_AJ_G0033881.1 mouse_genomes_project 8 82783498 82821102 - MGP_AJ_P0089909 Vps35 protein_coding protein_coding MGP_AJ_T0005393.1 MGP_AJ_G0004570.1 mouse_genomes_project 8 113925757 113927899 + Gm15655 antisense antisense MGP_AJ_T0018494.1 MGP_AJ_G0015704.1 mouse_genomes_project 8 109246274 109263148 - 9430091E24Rik processed_transcript processed_transcript MGP_AJ_T0018495.1 MGP_AJ_G0015704.1 mouse_genomes_project 8 109246464 109263169 - 9430091E24Rik processed_transcript processed_transcript MGP_AJ_T0018490.1 MGP_AJ_G0015702.1 mouse_genomes_project 8 104143810 104146511 + 1810019D21Rik processed_transcript processed_transcript MGP_AJ_T0018491.1 MGP_AJ_G0015702.1 mouse_genomes_project 8 104143845 104146302 + 1810019D21Rik processed_transcript processed_transcript MGP_AJ_T0018492.1 MGP_AJ_G0015702.1 mouse_genomes_project 8 104145475 104146936 + 1810019D21Rik processed_transcript processed_transcript MGP_AJ_T0088717.1 MGP_AJ_G0033526.1 mouse_genomes_project 8 34289079 34291006 + MGP_AJ_P0088717 AI429214 protein_coding protein_coding MGP_AJ_T0089194.1 MGP_AJ_G0033668.1 mouse_genomes_project 8 67399842 67427509 - MGP_AJ_P0089194 Mau2 protein_coding protein_coding MGP_AJ_T0089195.1 MGP_AJ_G0033668.1 mouse_genomes_project 8 67399842 67427558 - MGP_AJ_P0089195 Mau2 protein_coding protein_coding MGP_AJ_T0088047.1 MGP_AJ_G0033292.1 mouse_genomes_project 8 524002 537669 - Xab2 protein_coding retained_intron MGP_AJ_T0088048.1 MGP_AJ_G0033292.1 mouse_genomes_project 8 525668 537680 - MGP_AJ_P0088048 Xab2 protein_coding protein_coding MGP_AJ_T0088049.1 MGP_AJ_G0033292.1 mouse_genomes_project 8 525671 537666 - Xab2 protein_coding retained_intron MGP_AJ_T0088050.1 MGP_AJ_G0033292.1 mouse_genomes_project 8 529898 537634 - MGP_AJ_P0088050 Xab2 protein_coding protein_coding MGP_AJ_T0088051.1 MGP_AJ_G0033292.1 mouse_genomes_project 8 531576 537646 - MGP_AJ_P0088051 Xab2 protein_coding nonsense_mediated_decay MGP_AJ_T0088319.1 MGP_AJ_G0033374.1 mouse_genomes_project 8 10998764 11061406 - MGP_AJ_P0088319 Erich1 protein_coding protein_coding MGP_AJ_T0088605.1 MGP_AJ_G0033480.1 mouse_genomes_project 8 24260823 24275239 + MGP_AJ_P0088605 Prosc protein_coding protein_coding MGP_AJ_T0088606.1 MGP_AJ_G0033480.1 mouse_genomes_project 8 24260823 24269348 + MGP_AJ_P0088606 Prosc protein_coding protein_coding MGP_AJ_T0088607.1 MGP_AJ_G0033480.1 mouse_genomes_project 8 24260901 24272522 + MGP_AJ_P0088607 Prosc protein_coding unknown_likely_coding MGP_AJ_T0088986.1 MGP_AJ_G0033608.1 mouse_genomes_project 8 55086917 55281212 - MGP_AJ_P0088986 Galntl6 protein_coding protein_coding MGP_AJ_T0088987.1 MGP_AJ_G0033608.1 mouse_genomes_project 8 55086925 56237814 - MGP_AJ_P0088987 Galntl6 protein_coding protein_coding MGP_AJ_T0088988.1 MGP_AJ_G0033608.1 mouse_genomes_project 8 55089085 55281290 - MGP_AJ_P0088988 Galntl6 protein_coding protein_coding MGP_AJ_T0088989.1 MGP_AJ_G0033608.1 mouse_genomes_project 8 55107584 55156730 - Galntl6 protein_coding processed_transcript MGP_AJ_T0088990.1 MGP_AJ_G0033608.1 mouse_genomes_project 8 55728240 56236801 - Galntl6 protein_coding retained_intron MGP_AJ_T0088991.1 MGP_AJ_G0033608.1 mouse_genomes_project 8 55728326 56236750 - MGP_AJ_P0088991 Galntl6 protein_coding nonsense_mediated_decay MGP_AJ_T0088992.1 MGP_AJ_G0033608.1 mouse_genomes_project 8 55728446 56024991 - MGP_AJ_P0088992 Galntl6 protein_coding protein_coding MGP_AJ_T0088993.1 MGP_AJ_G0033608.1 mouse_genomes_project 8 55809220 56025009 - Galntl6 protein_coding processed_transcript MGP_AJ_T0088994.1 MGP_AJ_G0033608.1 mouse_genomes_project 8 55844804 56237034 - MGP_AJ_P0088994 Galntl6 protein_coding protein_coding MGP_AJ_T0005339.1 MGP_AJ_G0004525.1 mouse_genomes_project 8 19878294 19887676 + Gm15346 antisense antisense MGP_AJ_T0088483.1 MGP_AJ_G0033446.1 mouse_genomes_project 8 20611108 20649151 + MGP_AJ_P0088483 Sfrp1 protein_coding protein_coding MGP_AJ_T0090033.1 MGP_AJ_G0033917.1 mouse_genomes_project 8 89960796 89964457 + MGP_AJ_P0090033 Irx5 protein_coding protein_coding MGP_AJ_T0015959.1 MGP_AJ_G0014054.1 mouse_genomes_project 8 1776478 1776882 + processed_pseudogene processed_pseudogene MGP_AJ_T0090125.1 MGP_AJ_G0033951.1 mouse_genomes_project 8 92464296 92471229 + Cx3cl1 protein_coding processed_transcript MGP_AJ_T0090126.1 MGP_AJ_G0033951.1 mouse_genomes_project 8 92464296 92474702 + MGP_AJ_P0090126 Cx3cl1 protein_coding protein_coding MGP_AJ_T0090127.1 MGP_AJ_G0033951.1 mouse_genomes_project 8 92464491 92471922 + MGP_AJ_P0090127 Cx3cl1 protein_coding nonsense_mediated_decay MGP_AJ_T0090128.1 MGP_AJ_G0033951.1 mouse_genomes_project 8 92464512 92472306 + MGP_AJ_P0090128 Cx3cl1 protein_coding nonsense_mediated_decay MGP_AJ_T0091057.1 MGP_AJ_G0034256.1 mouse_genomes_project 8 123105908 123117757 + MGP_AJ_P0091057 Arv1 protein_coding protein_coding MGP_AJ_T0016003.1 MGP_AJ_G0014098.1 mouse_genomes_project 8 66146095 66146720 + processed_pseudogene processed_pseudogene MGP_AJ_T0090186.1 MGP_AJ_G0033971.1 mouse_genomes_project 8 93216175 93240738 + MGP_AJ_P0090186 Ccdc113 protein_coding protein_coding MGP_AJ_T0090378.1 MGP_AJ_G0034046.1 mouse_genomes_project 8 103886775 103888232 + MGP_AJ_P0090378 Nrn1l protein_coding protein_coding MGP_AJ_T0090379.1 MGP_AJ_G0034046.1 mouse_genomes_project 8 103886780 103888226 + MGP_AJ_P0090379 Nrn1l protein_coding protein_coding MGP_AJ_T0090651.1 MGP_AJ_G0034141.1 mouse_genomes_project 8 112637548 113568723 + MGP_AJ_P0090651 Wwox protein_coding protein_coding MGP_AJ_T0090652.1 MGP_AJ_G0034141.1 mouse_genomes_project 8 112637588 112933953 + MGP_AJ_P0090652 Wwox protein_coding protein_coding MGP_AJ_T0090653.1 MGP_AJ_G0034141.1 mouse_genomes_project 8 112637588 113090454 + MGP_AJ_P0090653 Wwox protein_coding protein_coding MGP_AJ_T0090654.1 MGP_AJ_G0034141.1 mouse_genomes_project 8 112637595 112659033 + Wwox protein_coding processed_transcript MGP_AJ_T0090655.1 MGP_AJ_G0034141.1 mouse_genomes_project 8 112637595 112684200 + MGP_AJ_P0090655 Wwox protein_coding protein_coding MGP_AJ_T0090656.1 MGP_AJ_G0034141.1 mouse_genomes_project 8 112653430 112726896 + Wwox protein_coding processed_transcript MGP_AJ_T0090657.1 MGP_AJ_G0034141.1 mouse_genomes_project 8 112820938 112921490 + Wwox protein_coding processed_transcript MGP_AJ_T0090658.1 MGP_AJ_G0034141.1 mouse_genomes_project 8 112927282 113568158 + Wwox protein_coding processed_transcript MGP_AJ_T0090659.1 MGP_AJ_G0034141.1 mouse_genomes_project 8 112927282 113235739 + Wwox protein_coding processed_transcript MGP_AJ_T0089421.1 MGP_AJ_G0033731.1 mouse_genomes_project 8 68947171 68957217 - MGP_AJ_P0089421 Ano8 protein_coding protein_coding MGP_AJ_T0011029.1 MGP_AJ_G0009151.1 mouse_genomes_project 8 126833388 126833468 + Mir1903 miRNA miRNA MGP_AJ_T0089918.1 MGP_AJ_G0033885.1 mouse_genomes_project 8 83030392 83065327 + MGP_AJ_P0089918 Gpt2 protein_coding protein_coding MGP_AJ_T0089919.1 MGP_AJ_G0033885.1 mouse_genomes_project 8 83030423 83062614 + MGP_AJ_P0089919 Gpt2 protein_coding nonsense_mediated_decay MGP_AJ_T0089920.1 MGP_AJ_G0033885.1 mouse_genomes_project 8 83030425 83031124 + Gpt2 protein_coding processed_transcript MGP_AJ_T0089921.1 MGP_AJ_G0033885.1 mouse_genomes_project 8 83053702 83059274 + Gpt2 protein_coding retained_intron MGP_AJ_T0089922.1 MGP_AJ_G0033885.1 mouse_genomes_project 8 83057163 83063460 + Gpt2 protein_coding processed_transcript MGP_AJ_T0089185.1 MGP_AJ_G0033664.1 mouse_genomes_project 8 67268889 67275204 - MGP_AJ_P0089185 Yjefn3 protein_coding unknown_likely_coding MGP_AJ_T0089186.1 MGP_AJ_G0033664.1 mouse_genomes_project 8 67268896 67284076 - MGP_AJ_P0089186 Yjefn3 protein_coding protein_coding MGP_AJ_T0089187.1 MGP_AJ_G0033664.1 mouse_genomes_project 8 67268896 67272197 - MGP_AJ_P0089187 Yjefn3 protein_coding protein_coding MGP_AJ_T0089188.1 MGP_AJ_G0033664.1 mouse_genomes_project 8 67268898 67269294 - Yjefn3 protein_coding processed_transcript MGP_AJ_T0101510.1 MGP_AJ_G0039476.1 mouse_genomes_project 8 93424955 93425091 - Gm26493 snoRNA snoRNA MGP_AJ_T0090980.1 MGP_AJ_G0034231.1 mouse_genomes_project 8 121617559 121669957 - MGP_AJ_P0090980 Fanca protein_coding protein_coding MGP_AJ_T0090981.1 MGP_AJ_G0034231.1 mouse_genomes_project 8 121618542 121623491 - Fanca protein_coding processed_transcript MGP_AJ_T0090982.1 MGP_AJ_G0034231.1 mouse_genomes_project 8 121620455 121626981 - MGP_AJ_P0090982 Fanca protein_coding protein_coding MGP_AJ_T0090983.1 MGP_AJ_G0034231.1 mouse_genomes_project 8 121623425 121625961 - MGP_AJ_P0090983 Fanca protein_coding protein_coding MGP_AJ_T0090984.1 MGP_AJ_G0034231.1 mouse_genomes_project 8 121626828 121631538 - Fanca protein_coding retained_intron MGP_AJ_T0090985.1 MGP_AJ_G0034231.1 mouse_genomes_project 8 121635265 121669941 - Fanca protein_coding retained_intron MGP_AJ_T0090986.1 MGP_AJ_G0034231.1 mouse_genomes_project 8 121635481 121663338 - MGP_AJ_P0090986 Fanca protein_coding protein_coding MGP_AJ_T0090987.1 MGP_AJ_G0034231.1 mouse_genomes_project 8 121638437 121640916 - Fanca protein_coding retained_intron MGP_AJ_T0090988.1 MGP_AJ_G0034231.1 mouse_genomes_project 8 121651904 121669941 - MGP_AJ_P0090988 Fanca protein_coding protein_coding MGP_AJ_T0090989.1 MGP_AJ_G0034231.1 mouse_genomes_project 8 121662257 121669941 - Fanca protein_coding retained_intron MGP_AJ_T0088495.1 MGP_AJ_G0033451.1 mouse_genomes_project 8 21795219 21807147 - MGP_AJ_P0088495 Ido1 protein_coding protein_coding MGP_AJ_T0088496.1 MGP_AJ_G0033451.1 mouse_genomes_project 8 21795219 21808490 - MGP_AJ_P0088496 Ido1 protein_coding protein_coding MGP_AJ_T0090471.1 MGP_AJ_G0034080.1 mouse_genomes_project 8 105421029 105436060 - MGP_AJ_P0090471 Nqo1 protein_coding protein_coding MGP_AJ_T0089435.1 MGP_AJ_G0033738.1 mouse_genomes_project 8 69043938 69061404 + MGP_AJ_P0089435 Slc27a1 protein_coding protein_coding MGP_AJ_T0089196.1 MGP_AJ_G0033669.1 mouse_genomes_project 8 67427636 67458353 + MGP_AJ_P0089196 Sugp1 protein_coding protein_coding MGP_AJ_T0088691.1 MGP_AJ_G0033515.1 mouse_genomes_project 8 32026034 32038578 + MGP_AJ_P0088691 Dusp4 protein_coding protein_coding MGP_AJ_T0010942.1 MGP_AJ_G0009064.1 mouse_genomes_project 8 6666400 6666553 - miRNA miRNA MGP_AJ_T0088031.1 MGP_AJ_G0033287.1 mouse_genomes_project 8 403351 407422 + MGP_AJ_P0088031 Zfp358 protein_coding protein_coding MGP_AJ_T0089504.1 MGP_AJ_G0033754.1 mouse_genomes_project 8 69647916 69651361 + MGP_AJ_P0089504 Olfr374 protein_coding protein_coding MGP_AJ_T0088650.1 MGP_AJ_G0033504.1 mouse_genomes_project 8 30828190 30848009 + MGP_AJ_P0088650 Ppp2cb protein_coding protein_coding MGP_AJ_T0089283.1 MGP_AJ_G0033688.1 mouse_genomes_project 8 67847032 67873608 - MGP_AJ_P0089283 Klhl26 protein_coding protein_coding MGP_AJ_T0089284.1 MGP_AJ_G0033688.1 mouse_genomes_project 8 67847032 67873608 - MGP_AJ_P0089284 Klhl26 protein_coding protein_coding MGP_AJ_T0101497.1 MGP_AJ_G0039463.1 mouse_genomes_project 8 65379230 65379361 + Gm22018 snoRNA snoRNA MGP_AJ_T0088870.1 MGP_AJ_G0033568.1 mouse_genomes_project 8 43541851 43546339 - MGP_AJ_P0088870 Slc25a4 protein_coding protein_coding MGP_AJ_T0088871.1 MGP_AJ_G0033568.1 mouse_genomes_project 8 43543024 43546085 - Slc25a4 protein_coding retained_intron MGP_AJ_T0100213.1 MGP_AJ_G0038179.1 mouse_genomes_project 8 57387690 57387797 + Gm26164 snRNA snRNA MGP_AJ_T0100226.1 MGP_AJ_G0038192.1 mouse_genomes_project 8 89641767 89641871 + Gm24254 snRNA snRNA MGP_AJ_T0009120.1 MGP_AJ_G0007334.1 mouse_genomes_project 8 70026914 70039478 + Gm17435 lincRNA lincRNA MGP_AJ_T0009124.1 MGP_AJ_G0007337.1 mouse_genomes_project 8 76771862 76784425 + Gm4890 lincRNA lincRNA MGP_AJ_T0089549.1 MGP_AJ_G0033775.1 mouse_genomes_project 8 72477481 72517128 + MGP_AJ_P0089549 protein_coding protein_coding MGP_AJ_T0089550.1 MGP_AJ_G0033775.1 mouse_genomes_project 8 72477723 72484856 + MGP_AJ_P0089550 protein_coding unknown_likely_coding MGP_AJ_T0089551.1 MGP_AJ_G0033775.1 mouse_genomes_project 8 72477804 72483924 + protein_coding processed_transcript MGP_AJ_T0089552.1 MGP_AJ_G0033775.1 mouse_genomes_project 8 72477816 72483346 + protein_coding processed_transcript MGP_AJ_T0089553.1 MGP_AJ_G0033775.1 mouse_genomes_project 8 72477837 72484914 + protein_coding retained_intron MGP_AJ_T0089554.1 MGP_AJ_G0033775.1 mouse_genomes_project 8 72501377 72517069 + MGP_AJ_P0089554 protein_coding protein_coding MGP_AJ_T0089555.1 MGP_AJ_G0033775.1 mouse_genomes_project 8 72508010 72509232 + protein_coding retained_intron MGP_AJ_T0088754.1 MGP_AJ_G0033538.1 mouse_genomes_project 8 38140271 38143419 + MGP_AJ_P0088754 protein_coding protein_coding MGP_AJ_T0090173.1 MGP_AJ_G0033965.1 mouse_genomes_project 8 93003846 93006432 + MGP_AJ_P0090173 Tepp protein_coding protein_coding MGP_AJ_T0090174.1 MGP_AJ_G0033965.1 mouse_genomes_project 8 93003866 93013857 + MGP_AJ_P0090174 Tepp protein_coding protein_coding MGP_AJ_T0090175.1 MGP_AJ_G0033965.1 mouse_genomes_project 8 93004879 93014643 + MGP_AJ_P0090175 Tepp protein_coding protein_coding MGP_AJ_T0090176.1 MGP_AJ_G0033965.1 mouse_genomes_project 8 93004883 93014643 + MGP_AJ_P0090176 Tepp protein_coding protein_coding MGP_AJ_T0090177.1 MGP_AJ_G0033965.1 mouse_genomes_project 8 93013751 93019635 + Tepp protein_coding retained_intron MGP_AJ_T0090178.1 MGP_AJ_G0033965.1 mouse_genomes_project 8 93013809 93019523 + MGP_AJ_P0090178 Tepp protein_coding protein_coding MGP_AJ_T0005407.1 MGP_AJ_G0004583.1 mouse_genomes_project 8 124983430 125007287 + Gm26759 antisense antisense MGP_AJ_T0009123.1 MGP_AJ_G0007336.1 mouse_genomes_project 8 75083738 75089516 + 1700092C02Rik lincRNA lincRNA MGP_AJ_T0089499.1 MGP_AJ_G0033751.1 mouse_genomes_project 8 69517949 69538957 - MGP_AJ_P0089499 Cyp4f18 protein_coding protein_coding MGP_AJ_T0089500.1 MGP_AJ_G0033751.1 mouse_genomes_project 8 69517950 69522372 - Cyp4f18 protein_coding processed_transcript MGP_AJ_T0089501.1 MGP_AJ_G0033751.1 mouse_genomes_project 8 69519021 69522688 - Cyp4f18 protein_coding processed_transcript MGP_AJ_T0090523.1 MGP_AJ_G0034103.1 mouse_genomes_project 8 108340188 108695308 + MGP_AJ_P0090523 Hydin protein_coding protein_coding MGP_AJ_T0090524.1 MGP_AJ_G0034103.1 mouse_genomes_project 8 108340194 108695112 + MGP_AJ_P0090524 Hydin protein_coding unknown_likely_coding MGP_AJ_T0090066.1 MGP_AJ_G0033932.1 mouse_genomes_project 8 91484225 91630123 + MGP_AJ_P0090066 Gnao1 protein_coding protein_coding MGP_AJ_T0090067.1 MGP_AJ_G0033932.1 mouse_genomes_project 8 91485122 91648866 + MGP_AJ_P0090067 Gnao1 protein_coding protein_coding MGP_AJ_T0090068.1 MGP_AJ_G0033932.1 mouse_genomes_project 8 91485124 91648435 + MGP_AJ_P0090068 Gnao1 protein_coding protein_coding MGP_AJ_T0090069.1 MGP_AJ_G0033932.1 mouse_genomes_project 8 91485597 91637212 + Gnao1 protein_coding processed_transcript MGP_AJ_T0090070.1 MGP_AJ_G0033932.1 mouse_genomes_project 8 91485620 91640120 + MGP_AJ_P0090070 Gnao1 protein_coding unknown_likely_coding MGP_AJ_T0090071.1 MGP_AJ_G0033932.1 mouse_genomes_project 8 91570746 91647642 + MGP_AJ_P0090071 Gnao1 protein_coding nonsense_mediated_decay MGP_AJ_T0090072.1 MGP_AJ_G0033932.1 mouse_genomes_project 8 91629224 91630395 + Gnao1 protein_coding retained_intron MGP_AJ_T0090073.1 MGP_AJ_G0033932.1 mouse_genomes_project 8 91630124 91647560 + MGP_AJ_P0090073 Gnao1 protein_coding protein_coding MGP_AJ_T0090074.1 MGP_AJ_G0033932.1 mouse_genomes_project 8 91630124 91647539 + MGP_AJ_P0090074 Gnao1 protein_coding protein_coding MGP_AJ_T0090075.1 MGP_AJ_G0033932.1 mouse_genomes_project 8 91632661 91636295 + Gnao1 protein_coding processed_transcript MGP_AJ_T0090076.1 MGP_AJ_G0033932.1 mouse_genomes_project 8 91642334 91646500 + Gnao1 protein_coding retained_intron MGP_AJ_T0089205.1 MGP_AJ_G0033674.1 mouse_genomes_project 8 67518106 67520513 + MGP_AJ_P0089205 Nr2c2ap protein_coding protein_coding MGP_AJ_T0088914.1 MGP_AJ_G0033580.1 mouse_genomes_project 8 45016823 45024804 - MGP_AJ_P0088914 Ing2 protein_coding protein_coding MGP_AJ_T0088915.1 MGP_AJ_G0033580.1 mouse_genomes_project 8 45016823 45023335 - MGP_AJ_P0088915 Ing2 protein_coding protein_coding MGP_AJ_T0088916.1 MGP_AJ_G0033580.1 mouse_genomes_project 8 45018400 45025202 - MGP_AJ_P0088916 Ing2 protein_coding protein_coding MGP_AJ_T0088393.1 MGP_AJ_G0033404.1 mouse_genomes_project 8 18049028 18050867 - MGP_AJ_P0088393 Gm15056 protein_coding protein_coding MGP_AJ_T0088394.1 MGP_AJ_G0033404.1 mouse_genomes_project 8 18049028 18050473 - MGP_AJ_P0088394 Gm15056 protein_coding protein_coding MGP_AJ_T0089184.1 MGP_AJ_G0033663.1 mouse_genomes_project 8 67261477 67268796 - MGP_AJ_P0089184 Cilp2 protein_coding protein_coding MGP_AJ_T0011009.1 MGP_AJ_G0009131.1 mouse_genomes_project 8 108577258 108577318 + miRNA miRNA MGP_AJ_T0089264.1 MGP_AJ_G0033683.1 mouse_genomes_project 8 67696412 67706986 + MGP_AJ_P0089264 Cope protein_coding protein_coding MGP_AJ_T0089265.1 MGP_AJ_G0033683.1 mouse_genomes_project 8 67696635 67700312 + Cope protein_coding retained_intron MGP_AJ_T0089266.1 MGP_AJ_G0033683.1 mouse_genomes_project 8 67696663 67706989 + Cope protein_coding retained_intron MGP_AJ_T0089267.1 MGP_AJ_G0033683.1 mouse_genomes_project 8 67696667 67704498 + MGP_AJ_P0089267 Cope protein_coding protein_coding MGP_AJ_T0089268.1 MGP_AJ_G0033683.1 mouse_genomes_project 8 67696687 67700817 + Cope protein_coding retained_intron MGP_AJ_T0089269.1 MGP_AJ_G0033683.1 mouse_genomes_project 8 67696690 67706768 + MGP_AJ_P0089269 Cope protein_coding nonsense_mediated_decay MGP_AJ_T0089270.1 MGP_AJ_G0033683.1 mouse_genomes_project 8 67699592 67706986 + MGP_AJ_P0089270 Cope protein_coding protein_coding MGP_AJ_T0089271.1 MGP_AJ_G0033683.1 mouse_genomes_project 8 67702397 67706986 + MGP_AJ_P0089271 Cope protein_coding protein_coding MGP_AJ_T0009117.1 MGP_AJ_G0007331.1 mouse_genomes_project 8 65582708 65586639 - lincRNA lincRNA MGP_AJ_T0010951.1 MGP_AJ_G0009073.1 mouse_genomes_project 8 13128135 13128217 - Mir3106 miRNA miRNA MGP_AJ_T0009101.1 MGP_AJ_G0007316.1 mouse_genomes_project 8 31444027 31453377 + Gm29243 lincRNA lincRNA MGP_AJ_T0090922.1 MGP_AJ_G0034219.1 mouse_genomes_project 8 121223096 121317700 - MGP_AJ_P0090922 Ankrd11 protein_coding protein_coding MGP_AJ_T0090923.1 MGP_AJ_G0034219.1 mouse_genomes_project 8 121223581 121317700 - MGP_AJ_P0090923 Ankrd11 protein_coding nonsense_mediated_decay MGP_AJ_T0090924.1 MGP_AJ_G0034219.1 mouse_genomes_project 8 121223910 121256760 - MGP_AJ_P0090924 Ankrd11 protein_coding protein_coding MGP_AJ_T0090925.1 MGP_AJ_G0034219.1 mouse_genomes_project 8 121236898 121256760 - MGP_AJ_P0090925 Ankrd11 protein_coding unknown_likely_coding MGP_AJ_T0090926.1 MGP_AJ_G0034219.1 mouse_genomes_project 8 121246163 121317680 - Ankrd11 protein_coding retained_intron MGP_AJ_T0088803.1 MGP_AJ_G0033556.1 mouse_genomes_project 8 42608414 42650056 - MGP_AJ_P0088803 Cyp4v3 protein_coding nonsense_mediated_decay MGP_AJ_T0088804.1 MGP_AJ_G0033556.1 mouse_genomes_project 8 42646535 42674520 - MGP_AJ_P0088804 Cyp4v3 protein_coding protein_coding MGP_AJ_T0090369.1 MGP_AJ_G0034043.1 mouse_genomes_project 8 103847140 103848988 + MGP_AJ_P0090369 Thap11 protein_coding protein_coding MGP_AJ_T0090960.1 MGP_AJ_G0034229.1 mouse_genomes_project 8 121589650 121602399 - Vps9d1 protein_coding retained_intron MGP_AJ_T0090961.1 MGP_AJ_G0034229.1 mouse_genomes_project 8 121589650 121602353 - MGP_AJ_P0090961 Vps9d1 protein_coding protein_coding MGP_AJ_T0090962.1 MGP_AJ_G0034229.1 mouse_genomes_project 8 121589650 121602525 - MGP_AJ_P0090962 Vps9d1 protein_coding protein_coding MGP_AJ_T0090963.1 MGP_AJ_G0034229.1 mouse_genomes_project 8 121589652 121602340 - Vps9d1 protein_coding retained_intron MGP_AJ_T0090964.1 MGP_AJ_G0034229.1 mouse_genomes_project 8 121589652 121602286 - MGP_AJ_P0090964 Vps9d1 protein_coding nonsense_mediated_decay MGP_AJ_T0090965.1 MGP_AJ_G0034229.1 mouse_genomes_project 8 121589653 121602269 - MGP_AJ_P0090965 Vps9d1 protein_coding protein_coding MGP_AJ_T0090966.1 MGP_AJ_G0034229.1 mouse_genomes_project 8 121592234 121602282 - Vps9d1 protein_coding retained_intron MGP_AJ_T0090967.1 MGP_AJ_G0034229.1 mouse_genomes_project 8 121592430 121594218 - Vps9d1 protein_coding processed_transcript MGP_AJ_T0090968.1 MGP_AJ_G0034229.1 mouse_genomes_project 8 121593803 121595284 - Vps9d1 protein_coding processed_transcript MGP_AJ_T0090969.1 MGP_AJ_G0034229.1 mouse_genomes_project 8 121594144 121595301 - Vps9d1 protein_coding retained_intron MGP_AJ_T0090970.1 MGP_AJ_G0034229.1 mouse_genomes_project 8 121595845 121596276 - Vps9d1 protein_coding retained_intron MGP_AJ_T0090971.1 MGP_AJ_G0034229.1 mouse_genomes_project 8 121596120 121598356 - Vps9d1 protein_coding retained_intron MGP_AJ_T0090972.1 MGP_AJ_G0034229.1 mouse_genomes_project 8 121596996 121602227 - Vps9d1 protein_coding retained_intron MGP_AJ_T0100239.1 MGP_AJ_G0038205.1 mouse_genomes_project 8 113810002 113810106 - Gm23677 snRNA snRNA MGP_AJ_T0088624.1 MGP_AJ_G0033491.1 mouse_genomes_project 8 27384062 27388547 - MGP_AJ_P0088624 Tex24 protein_coding protein_coding MGP_AJ_T0090834.1 MGP_AJ_G0034196.1 mouse_genomes_project 8 120120964 120152804 - MGP_AJ_P0090834 Klhdc4 protein_coding protein_coding MGP_AJ_T0090835.1 MGP_AJ_G0034196.1 mouse_genomes_project 8 120120984 120152775 - Klhdc4 protein_coding retained_intron MGP_AJ_T0090836.1 MGP_AJ_G0034196.1 mouse_genomes_project 8 120120995 120122079 - Klhdc4 protein_coding retained_intron MGP_AJ_T0090837.1 MGP_AJ_G0034196.1 mouse_genomes_project 8 120121198 120152715 - MGP_AJ_P0090837 Klhdc4 protein_coding protein_coding MGP_AJ_T0090838.1 MGP_AJ_G0034196.1 mouse_genomes_project 8 120121198 120152715 - MGP_AJ_P0090838 Klhdc4 protein_coding nonsense_mediated_decay MGP_AJ_T0090839.1 MGP_AJ_G0034196.1 mouse_genomes_project 8 120121198 120152715 - MGP_AJ_P0090839 Klhdc4 protein_coding protein_coding MGP_AJ_T0090840.1 MGP_AJ_G0034196.1 mouse_genomes_project 8 120122823 120134836 - Klhdc4 protein_coding processed_transcript MGP_AJ_T0090841.1 MGP_AJ_G0034196.1 mouse_genomes_project 8 120124126 120126252 - Klhdc4 protein_coding retained_intron MGP_AJ_T0090842.1 MGP_AJ_G0034196.1 mouse_genomes_project 8 120149751 120152744 - Klhdc4 protein_coding retained_intron MGP_AJ_T0090843.1 MGP_AJ_G0034196.1 mouse_genomes_project 8 120150045 120152739 - MGP_AJ_P0090843 Klhdc4 protein_coding nonsense_mediated_decay MGP_AJ_T0090253.1 MGP_AJ_G0033996.1 mouse_genomes_project 8 102545136 102555496 - MGP_AJ_P0090253 Cdh16 protein_coding protein_coding MGP_AJ_T0088718.1 MGP_AJ_G0033527.1 mouse_genomes_project 8 34867731 36031153 - MGP_AJ_P0088718 Sgcz protein_coding nonsense_mediated_decay MGP_AJ_T0088719.1 MGP_AJ_G0033527.1 mouse_genomes_project 8 34867987 36031153 - MGP_AJ_P0088719 Sgcz protein_coding protein_coding MGP_AJ_T0018484.1 MGP_AJ_G0015699.1 mouse_genomes_project 8 84917624 84923495 - Gm27208 processed_transcript lincRNA MGP_AJ_T0018485.1 MGP_AJ_G0015699.1 mouse_genomes_project 8 84923012 84924117 - Gm27208 processed_transcript TEC MGP_AJ_T0005345.1 MGP_AJ_G0004529.1 mouse_genomes_project 8 24260645 24261311 - Proscos antisense antisense MGP_AJ_T0005346.1 MGP_AJ_G0004529.1 mouse_genomes_project 8 24260650 24261266 - Proscos antisense antisense MGP_AJ_T0089175.1 MGP_AJ_G0033662.1 mouse_genomes_project 8 67210507 67253270 + MGP_AJ_P0089175 Pbx4 protein_coding protein_coding MGP_AJ_T0089176.1 MGP_AJ_G0033662.1 mouse_genomes_project 8 67210640 67239490 + Pbx4 protein_coding retained_intron MGP_AJ_T0089177.1 MGP_AJ_G0033662.1 mouse_genomes_project 8 67210653 67253270 + MGP_AJ_P0089177 Pbx4 protein_coding nonsense_mediated_decay MGP_AJ_T0089178.1 MGP_AJ_G0033662.1 mouse_genomes_project 8 67210676 67251664 + MGP_AJ_P0089178 Pbx4 protein_coding protein_coding MGP_AJ_T0089179.1 MGP_AJ_G0033662.1 mouse_genomes_project 8 67210678 67253270 + MGP_AJ_P0089179 Pbx4 protein_coding nonsense_mediated_decay MGP_AJ_T0089180.1 MGP_AJ_G0033662.1 mouse_genomes_project 8 67210706 67253270 + MGP_AJ_P0089180 Pbx4 protein_coding nonsense_mediated_decay MGP_AJ_T0089181.1 MGP_AJ_G0033662.1 mouse_genomes_project 8 67227895 67245167 + Pbx4 protein_coding processed_transcript MGP_AJ_T0089182.1 MGP_AJ_G0033662.1 mouse_genomes_project 8 67246300 67251616 + Pbx4 protein_coding retained_intron MGP_AJ_T0089183.1 MGP_AJ_G0033662.1 mouse_genomes_project 8 67246474 67253270 + Pbx4 protein_coding retained_intron MGP_AJ_T0089800.1 MGP_AJ_G0033853.1 mouse_genomes_project 8 82357986 82365160 - MGP_AJ_P0089800 Dand5 protein_coding protein_coding MGP_AJ_T0010990.1 MGP_AJ_G0009112.1 mouse_genomes_project 8 82661939 82661995 - Gm23388 miRNA miRNA MGP_AJ_T0089907.1 MGP_AJ_G0033880.1 mouse_genomes_project 8 82765815 82766754 + MGP_AJ_P0089907 Olfr371 protein_coding protein_coding MGP_AJ_T0088581.1 MGP_AJ_G0033471.1 mouse_genomes_project 8 23053833 23137766 + MGP_AJ_P0088581 Kcnu1 protein_coding protein_coding MGP_AJ_T0088582.1 MGP_AJ_G0033471.1 mouse_genomes_project 8 23109491 23137767 + MGP_AJ_P0088582 Kcnu1 protein_coding protein_coding MGP_AJ_T0088583.1 MGP_AJ_G0033471.1 mouse_genomes_project 8 23109503 23119407 + MGP_AJ_P0088583 Kcnu1 protein_coding protein_coding MGP_AJ_T0090436.1 MGP_AJ_G0034070.1 mouse_genomes_project 8 104913295 104943534 + MGP_AJ_P0090436 Cirh1a protein_coding protein_coding MGP_AJ_T0011724.1 MGP_AJ_G0009846.1 mouse_genomes_project 8 88776912 88777177 - Gm23408 misc_RNA misc_RNA MGP_AJ_T0089926.1 MGP_AJ_G0033888.1 mouse_genomes_project 8 83259153 83384097 - MGP_AJ_P0089926 Itfg1 protein_coding protein_coding MGP_AJ_T0088289.1 MGP_AJ_G0033363.1 mouse_genomes_project 8 10512557 10524282 - MGP_AJ_P0088289 1700029H14Rik protein_coding protein_coding MGP_AJ_T0088290.1 MGP_AJ_G0033363.1 mouse_genomes_project 8 10512557 10524269 - MGP_AJ_P0088290 1700029H14Rik protein_coding protein_coding MGP_AJ_T0088291.1 MGP_AJ_G0033363.1 mouse_genomes_project 8 10512835 10524226 - MGP_AJ_P0088291 1700029H14Rik protein_coding nonsense_mediated_decay MGP_AJ_T0088292.1 MGP_AJ_G0033363.1 mouse_genomes_project 8 10512856 10524225 - MGP_AJ_P0088292 1700029H14Rik protein_coding protein_coding MGP_AJ_T0088293.1 MGP_AJ_G0033363.1 mouse_genomes_project 8 10517779 10524226 - MGP_AJ_P0088293 1700029H14Rik protein_coding nonsense_mediated_decay MGP_AJ_T0011005.1 MGP_AJ_G0009127.1 mouse_genomes_project 8 103950322 103950385 - Mir7074 miRNA miRNA MGP_AJ_T0010985.1 MGP_AJ_G0009107.1 mouse_genomes_project 8 81753231 81753336 + Mir24-2 miRNA miRNA MGP_AJ_T0089644.1 MGP_AJ_G0033807.1 mouse_genomes_project 8 80299149 80309724 - MGP_AJ_P0089644 Zfp330 protein_coding protein_coding MGP_AJ_T0005355.1 MGP_AJ_G0004538.1 mouse_genomes_project 8 54638831 54642078 - Gm28063 antisense antisense MGP_AJ_T0005356.1 MGP_AJ_G0004538.1 mouse_genomes_project 8 54638849 54642078 - Gm28063 antisense antisense MGP_AJ_T0009098.1 MGP_AJ_G0007314.1 mouse_genomes_project 8 31267031 31273409 + Gm9951 lincRNA lincRNA MGP_AJ_T0009099.1 MGP_AJ_G0007314.1 mouse_genomes_project 8 31272182 31274615 + Gm9951 lincRNA lincRNA MGP_AJ_T0018450.1 MGP_AJ_G0015686.1 mouse_genomes_project 8 22228899 22233901 + Gm16933 processed_transcript processed_transcript MGP_AJ_T0100220.1 MGP_AJ_G0038186.1 mouse_genomes_project 8 76487899 76488006 - Gm22044 snRNA snRNA MGP_AJ_T0098739.1 MGP_AJ_G0036723.1 mouse_genomes_project 8 45070818 45070942 + n-R5s96 rRNA rRNA MGP_AJ_T0015999.1 MGP_AJ_G0014094.1 mouse_genomes_project 8 58410313 58410686 - processed_pseudogene processed_pseudogene MGP_AJ_T0088978.1 MGP_AJ_G0033603.1 mouse_genomes_project 8 54638827 54642362 + MGP_AJ_P0088978 Hand2 protein_coding protein_coding MGP_AJ_T0005359.1 MGP_AJ_G0004541.1 mouse_genomes_project 8 59157754 59233202 + 4930512H18Rik antisense antisense MGP_AJ_T0016028.1 MGP_AJ_G0014123.1 mouse_genomes_project 8 95262388 95263378 - processed_pseudogene processed_pseudogene MGP_AJ_T0089486.1 MGP_AJ_G0033750.1 mouse_genomes_project 8 69475436 69498701 + MGP_AJ_P0089486 Zfp961 protein_coding protein_coding MGP_AJ_T0089487.1 MGP_AJ_G0033750.1 mouse_genomes_project 8 69475446 69498701 + Zfp961 protein_coding processed_transcript MGP_AJ_T0089488.1 MGP_AJ_G0033750.1 mouse_genomes_project 8 69475464 69498294 + Zfp961 protein_coding processed_transcript MGP_AJ_T0089489.1 MGP_AJ_G0033750.1 mouse_genomes_project 8 69475465 69496646 + Zfp961 protein_coding processed_transcript MGP_AJ_T0089490.1 MGP_AJ_G0033750.1 mouse_genomes_project 8 69475468 69496421 + Zfp961 protein_coding processed_transcript MGP_AJ_T0089491.1 MGP_AJ_G0033750.1 mouse_genomes_project 8 69475469 69496697 + MGP_AJ_P0089491 Zfp961 protein_coding protein_coding MGP_AJ_T0089492.1 MGP_AJ_G0033750.1 mouse_genomes_project 8 69475475 69496537 + Zfp961 protein_coding processed_transcript MGP_AJ_T0089493.1 MGP_AJ_G0033750.1 mouse_genomes_project 8 69475478 69496886 + Zfp961 protein_coding processed_transcript MGP_AJ_T0089494.1 MGP_AJ_G0033750.1 mouse_genomes_project 8 69475479 69494612 + Zfp961 protein_coding processed_transcript MGP_AJ_T0089495.1 MGP_AJ_G0033750.1 mouse_genomes_project 8 69475479 69497347 + MGP_AJ_P0089495 Zfp961 protein_coding protein_coding MGP_AJ_T0089496.1 MGP_AJ_G0033750.1 mouse_genomes_project 8 69475489 69522865 + Zfp961 protein_coding processed_transcript MGP_AJ_T0089497.1 MGP_AJ_G0033750.1 mouse_genomes_project 8 69475489 69500084 + MGP_AJ_P0089497 Zfp961 protein_coding protein_coding MGP_AJ_T0089498.1 MGP_AJ_G0033750.1 mouse_genomes_project 8 69478910 69496544 + Zfp961 protein_coding processed_transcript MGP_AJ_T0089190.1 MGP_AJ_G0033666.1 mouse_genomes_project 8 67283547 67284882 + MGP_AJ_P0089190 Tssk6 protein_coding protein_coding MGP_AJ_T0101470.1 MGP_AJ_G0039436.1 mouse_genomes_project 8 18790327 18790420 - snoRNA snoRNA MGP_AJ_T0016042.1 MGP_AJ_G0014137.1 mouse_genomes_project 8 126011255 126011690 + processed_pseudogene processed_pseudogene MGP_AJ_T0090672.1 MGP_AJ_G0034148.1 mouse_genomes_project 8 115211678 115221023 - MGP_AJ_P0090672 1700030J22Rik protein_coding protein_coding MGP_AJ_T0088799.1 MGP_AJ_G0033553.1 mouse_genomes_project 8 42406210 42426226 + MGP_AJ_P0088799 Mtnr1a protein_coding protein_coding MGP_AJ_T0088800.1 MGP_AJ_G0033553.1 mouse_genomes_project 8 42406447 42425226 + MGP_AJ_P0088800 Mtnr1a protein_coding protein_coding MGP_AJ_T0090003.1 MGP_AJ_G0033910.1 mouse_genomes_project 8 88417619 88643992 + MGP_AJ_P0090003 Chd9 protein_coding protein_coding MGP_AJ_T0090005.1 MGP_AJ_G0033910.1 mouse_genomes_project 8 88493994 88644000 + MGP_AJ_P0090005 Chd9 protein_coding unknown_likely_coding MGP_AJ_T0088386.1 MGP_AJ_G0033397.1 mouse_genomes_project 8 16109624 16113766 + MGP_AJ_P0088386 Defb4 protein_coding protein_coding MGP_AJ_T0101485.1 MGP_AJ_G0039451.1 mouse_genomes_project 8 44794304 44794438 + Gm22857 snoRNA snoRNA MGP_AJ_T0090482.1 MGP_AJ_G0034084.1 mouse_genomes_project 8 106740947 106839273 + MGP_AJ_P0090482 Zfhx3 protein_coding protein_coding MGP_AJ_T0090483.1 MGP_AJ_G0034084.1 mouse_genomes_project 8 106753169 107001968 + MGP_AJ_P0090483 Zfhx3 protein_coding protein_coding MGP_AJ_T0089432.1 MGP_AJ_G0033736.1 mouse_genomes_project 8 69029320 69033889 - MGP_AJ_P0089432 Tmem221 protein_coding protein_coding MGP_AJ_T0089544.1 MGP_AJ_G0033773.1 mouse_genomes_project 8 70333899 70866490 - MGP_AJ_P0089544 Large protein_coding protein_coding MGP_AJ_T0089545.1 MGP_AJ_G0033773.1 mouse_genomes_project 8 70333899 70865506 - MGP_AJ_P0089545 Large protein_coding protein_coding MGP_AJ_T0089546.1 MGP_AJ_G0033773.1 mouse_genomes_project 8 70557313 70613463 - Large protein_coding retained_intron MGP_AJ_T0011717.1 MGP_AJ_G0009839.1 mouse_genomes_project 8 28915191 28915292 - Gm24184 misc_RNA misc_RNA MGP_AJ_T0090348.1 MGP_AJ_G0034032.1 mouse_genomes_project 8 103589628 103606416 + MGP_AJ_P0090348 Fam65a protein_coding protein_coding MGP_AJ_T0088164.1 MGP_AJ_G0033326.1 mouse_genomes_project 8 6863645 6869949 - MGP_AJ_P0088164 Lig4 protein_coding protein_coding MGP_AJ_T0088165.1 MGP_AJ_G0033326.1 mouse_genomes_project 8 6864502 6871312 - MGP_AJ_P0088165 Lig4 protein_coding protein_coding MGP_AJ_T0089148.1 MGP_AJ_G0033651.1 mouse_genomes_project 8 66724685 66726651 - MGP_AJ_P0089148 protein_coding protein_coding MGP_AJ_T0005350.1 MGP_AJ_G0004533.1 mouse_genomes_project 8 42354778 42359947 - Gm2366 antisense antisense MGP_AJ_T0009076.1 MGP_AJ_G0007298.1 mouse_genomes_project 8 8641522 8651566 + 1700128E19Rik lincRNA lincRNA MGP_AJ_T0099101.1 MGP_AJ_G0037073.1 mouse_genomes_project 8 118372565 118375242 + Gm15898 sense_intronic sense_intronic MGP_AJ_T0010943.1 MGP_AJ_G0009065.1 mouse_genomes_project 8 8559600 8559643 - Mir7238 miRNA miRNA MGP_AJ_T0009185.1 MGP_AJ_G0007377.1 mouse_genomes_project 8 108338459 108340674 - Gm26832 lincRNA lincRNA MGP_AJ_T0089562.1 MGP_AJ_G0033779.1 mouse_genomes_project 8 72693204 72703492 + MGP_AJ_P0089562 Rasd2 protein_coding protein_coding MGP_AJ_T0089563.1 MGP_AJ_G0033779.1 mouse_genomes_project 8 72693762 72701770 + MGP_AJ_P0089563 Rasd2 protein_coding protein_coding MGP_AJ_T0088457.1 MGP_AJ_G0033439.1 mouse_genomes_project 8 19979834 19998909 - MGP_AJ_P0088457 Ap3m2 protein_coding unknown_likely_coding MGP_AJ_T0089543.1 MGP_AJ_G0033772.1 mouse_genomes_project 8 70279344 70281339 + MGP_AJ_P0089543 F2rl3 protein_coding protein_coding MGP_AJ_T0009083.1 MGP_AJ_G0007302.1 mouse_genomes_project 8 17068659 17069670 - lincRNA lincRNA MGP_AJ_T0089139.1 MGP_AJ_G0033648.1 mouse_genomes_project 8 66484637 66537825 - MGP_AJ_P0089139 Lzts1 protein_coding protein_coding MGP_AJ_T0089140.1 MGP_AJ_G0033648.1 mouse_genomes_project 8 66487468 66492919 - MGP_AJ_P0089140 Lzts1 protein_coding protein_coding MGP_AJ_T0089141.1 MGP_AJ_G0033648.1 mouse_genomes_project 8 66518693 66537815 - Lzts1 protein_coding processed_transcript MGP_AJ_T0089142.1 MGP_AJ_G0033648.1 mouse_genomes_project 8 66535765 66537805 - Lzts1 protein_coding processed_transcript MGP_AJ_T0089143.1 MGP_AJ_G0033648.1 mouse_genomes_project 8 66537313 66537789 - Lzts1 protein_coding retained_intron MGP_AJ_T0101463.1 MGP_AJ_G0039429.1 mouse_genomes_project 8 11248399 11248530 - Gm26184 snoRNA snoRNA MGP_AJ_T0090389.1 MGP_AJ_G0034052.1 mouse_genomes_project 8 103973664 103979613 - MGP_AJ_P0090389 Dpep3 protein_coding protein_coding MGP_AJ_T0010975.1 MGP_AJ_G0009097.1 mouse_genomes_project 8 81262641 81262748 - Mir1668 miRNA miRNA MGP_AJ_T0101494.1 MGP_AJ_G0039460.1 mouse_genomes_project 8 63188508 63188643 + Gm26123 snoRNA snoRNA MGP_AJ_T0101502.1 MGP_AJ_G0039468.1 mouse_genomes_project 8 74606726 74606856 - Gm24838 snoRNA snoRNA MGP_AJ_T0101528.1 MGP_AJ_G0039494.1 mouse_genomes_project 8 127234154 127234281 + Gm26100 snoRNA snoRNA MGP_AJ_T0005374.1 MGP_AJ_G0004554.1 mouse_genomes_project 8 92063216 92070956 - Gm15890 antisense antisense MGP_AJ_T0088307.1 MGP_AJ_G0033368.1 mouse_genomes_project 8 10785324 10794859 - MGP_AJ_P0088307 AF366264 protein_coding protein_coding MGP_AJ_T0088480.1 MGP_AJ_G0033444.1 mouse_genomes_project 8 20426743 20437717 - MGP_AJ_P0088480 Gins4 protein_coding protein_coding MGP_AJ_T0090897.1 MGP_AJ_G0034209.1 mouse_genomes_project 8 120806487 120877561 - MGP_AJ_P0090897 Piezo1 protein_coding protein_coding MGP_AJ_T0090898.1 MGP_AJ_G0034209.1 mouse_genomes_project 8 120806501 120824854 - MGP_AJ_P0090898 Piezo1 protein_coding protein_coding MGP_AJ_T0090899.1 MGP_AJ_G0034209.1 mouse_genomes_project 8 120806510 120809570 - Piezo1 protein_coding retained_intron MGP_AJ_T0090900.1 MGP_AJ_G0034209.1 mouse_genomes_project 8 120806771 120824853 - MGP_AJ_P0090900 Piezo1 protein_coding nonsense_mediated_decay MGP_AJ_T0090901.1 MGP_AJ_G0034209.1 mouse_genomes_project 8 120806771 120877270 - MGP_AJ_P0090901 Piezo1 protein_coding unknown_likely_coding MGP_AJ_T0090902.1 MGP_AJ_G0034209.1 mouse_genomes_project 8 120806830 120807790 - Piezo1 protein_coding retained_intron MGP_AJ_T0090903.1 MGP_AJ_G0034209.1 mouse_genomes_project 8 120806869 120807466 - Piezo1 protein_coding retained_intron MGP_AJ_T0090904.1 MGP_AJ_G0034209.1 mouse_genomes_project 8 120808156 120808659 - Piezo1 protein_coding retained_intron MGP_AJ_T0090905.1 MGP_AJ_G0034209.1 mouse_genomes_project 8 120809654 120810414 - Piezo1 protein_coding retained_intron MGP_AJ_T0090906.1 MGP_AJ_G0034209.1 mouse_genomes_project 8 120810713 120823052 - MGP_AJ_P0090906 Piezo1 protein_coding nonsense_mediated_decay MGP_AJ_T0011710.1 MGP_AJ_G0009832.1 mouse_genomes_project 8 4417926 4418125 + Gm27585 misc_RNA misc_RNA MGP_AJ_T0088390.1 MGP_AJ_G0033401.1 mouse_genomes_project 8 16436591 16436804 - MGP_AJ_P0088390 Defb8 protein_coding protein_coding MGP_AJ_T0009151.1 MGP_AJ_G0007356.1 mouse_genomes_project 8 85013876 85029207 - Gm27016 lincRNA lincRNA MGP_AJ_T0015994.1 MGP_AJ_G0014089.1 mouse_genomes_project 8 39416706 39418356 - processed_pseudogene processed_pseudogene MGP_AJ_T0090250.1 MGP_AJ_G0033994.1 mouse_genomes_project 8 102448581 102458261 + MGP_AJ_P0090250 Car7 protein_coding protein_coding MGP_AJ_T0090251.1 MGP_AJ_G0033994.1 mouse_genomes_project 8 102455793 102456977 + Car7 protein_coding retained_intron MGP_AJ_T0090211.1 MGP_AJ_G0033979.1 mouse_genomes_project 8 96747162 97150284 - MGP_AJ_P0090211 Cdh8 protein_coding protein_coding MGP_AJ_T0090212.1 MGP_AJ_G0033979.1 mouse_genomes_project 8 96747574 97150284 - MGP_AJ_P0090212 Cdh8 protein_coding protein_coding MGP_AJ_T0090213.1 MGP_AJ_G0033979.1 mouse_genomes_project 8 96751466 97150296 - MGP_AJ_P0090213 Cdh8 protein_coding protein_coding MGP_AJ_T0090214.1 MGP_AJ_G0033979.1 mouse_genomes_project 8 96751657 97150328 - MGP_AJ_P0090214 Cdh8 protein_coding protein_coding MGP_AJ_T0090215.1 MGP_AJ_G0033979.1 mouse_genomes_project 8 96751657 97150176 - MGP_AJ_P0090215 Cdh8 protein_coding nonsense_mediated_decay MGP_AJ_T0090216.1 MGP_AJ_G0033979.1 mouse_genomes_project 8 96895323 97010369 - Cdh8 protein_coding retained_intron MGP_AJ_T0090217.1 MGP_AJ_G0033979.1 mouse_genomes_project 8 96948257 97150296 - MGP_AJ_P0090217 Cdh8 protein_coding protein_coding MGP_AJ_T0089738.1 MGP_AJ_G0033843.1 mouse_genomes_project 8 81790639 81794727 - MGP_AJ_P0089738 D8Ertd738e protein_coding protein_coding MGP_AJ_T0088490.1 MGP_AJ_G0033449.1 mouse_genomes_project 8 21647442 21649247 - MGP_AJ_P0088490 1810011O10Rik protein_coding protein_coding MGP_AJ_T0090641.1 MGP_AJ_G0034138.1 mouse_genomes_project 8 112297582 112319222 + MGP_AJ_P0090641 Nudt7 protein_coding protein_coding MGP_AJ_T0090642.1 MGP_AJ_G0034138.1 mouse_genomes_project 8 112297599 112316788 + MGP_AJ_P0090642 Nudt7 protein_coding protein_coding MGP_AJ_T0090643.1 MGP_AJ_G0034138.1 mouse_genomes_project 8 112297643 112316798 + MGP_AJ_P0090643 Nudt7 protein_coding protein_coding MGP_AJ_T0090644.1 MGP_AJ_G0034138.1 mouse_genomes_project 8 112297666 112316792 + MGP_AJ_P0090644 Nudt7 protein_coding protein_coding MGP_AJ_T0090645.1 MGP_AJ_G0034138.1 mouse_genomes_project 8 112297667 112312876 + MGP_AJ_P0090645 Nudt7 protein_coding protein_coding MGP_AJ_T0090431.1 MGP_AJ_G0034068.1 mouse_genomes_project 8 104889521 104902181 + MGP_AJ_P0090431 Has3 protein_coding protein_coding MGP_AJ_T0090432.1 MGP_AJ_G0034068.1 mouse_genomes_project 8 104890115 104900470 + MGP_AJ_P0090432 Has3 protein_coding protein_coding MGP_AJ_T0089277.1 MGP_AJ_G0033686.1 mouse_genomes_project 8 67768206 67776787 + MGP_AJ_P0089277 Comp protein_coding protein_coding MGP_AJ_T0089750.1 MGP_AJ_G0033846.1 mouse_genomes_project 8 81931072 82063431 + Cacna1a protein_coding retained_intron MGP_AJ_T0089751.1 MGP_AJ_G0033846.1 mouse_genomes_project 8 81959552 82184671 + MGP_AJ_P0089751 Cacna1a protein_coding protein_coding MGP_AJ_T0089752.1 MGP_AJ_G0033846.1 mouse_genomes_project 8 81959565 82184487 + MGP_AJ_P0089752 Cacna1a protein_coding protein_coding MGP_AJ_T0089753.1 MGP_AJ_G0033846.1 mouse_genomes_project 8 82091416 82098341 + Cacna1a protein_coding processed_transcript MGP_AJ_T0089754.1 MGP_AJ_G0033846.1 mouse_genomes_project 8 82115928 82124529 + Cacna1a protein_coding retained_intron MGP_AJ_T0089755.1 MGP_AJ_G0033846.1 mouse_genomes_project 8 82145376 82156067 + Cacna1a protein_coding retained_intron MGP_AJ_T0089756.1 MGP_AJ_G0033846.1 mouse_genomes_project 8 82145389 82157029 + Cacna1a protein_coding retained_intron MGP_AJ_T0089757.1 MGP_AJ_G0033846.1 mouse_genomes_project 8 82145415 82178412 + Cacna1a protein_coding retained_intron MGP_AJ_T0089758.1 MGP_AJ_G0033846.1 mouse_genomes_project 8 82145918 82161863 + Cacna1a protein_coding processed_transcript MGP_AJ_T0089759.1 MGP_AJ_G0033846.1 mouse_genomes_project 8 82159558 82184674 + MGP_AJ_P0089759 Cacna1a protein_coding unknown_likely_coding MGP_AJ_T0101472.1 MGP_AJ_G0039438.1 mouse_genomes_project 8 18886784 18886877 - snoRNA snoRNA MGP_AJ_T0089564.1 MGP_AJ_G0033780.1 mouse_genomes_project 8 72919127 73449434 + MGP_AJ_P0089564 1700007B14Rik protein_coding protein_coding MGP_AJ_T0089565.1 MGP_AJ_G0033780.1 mouse_genomes_project 8 72919416 73449459 + MGP_AJ_P0089565 1700007B14Rik protein_coding protein_coding MGP_AJ_T0088621.1 MGP_AJ_G0033488.1 mouse_genomes_project 8 24653082 24663736 - MGP_AJ_P0088621 Chrna6 protein_coding protein_coding MGP_AJ_T0088434.1 MGP_AJ_G0033431.1 mouse_genomes_project 8 19603638 19623514 + MGP_AJ_P0088434 Mrps31 protein_coding unknown_likely_coding MGP_AJ_T0011727.1 MGP_AJ_G0009849.1 mouse_genomes_project 8 108577125 108577416 + Gm22701 misc_RNA misc_RNA MGP_AJ_T0100209.1 MGP_AJ_G0038175.1 mouse_genomes_project 8 49483020 49483159 + Gm24929 snRNA snRNA MGP_AJ_T0005337.1 MGP_AJ_G0004524.1 mouse_genomes_project 8 13388215 13390941 + Gm16347 antisense antisense MGP_AJ_T0005338.1 MGP_AJ_G0004524.1 mouse_genomes_project 8 13388226 13392078 + Gm16347 antisense antisense MGP_AJ_T0010978.1 MGP_AJ_G0009100.1 mouse_genomes_project 8 81545665 81545802 + Mir8111 miRNA miRNA MGP_AJ_T0088531.1 MGP_AJ_G0033460.1 mouse_genomes_project 8 22347483 22394679 - MGP_AJ_P0088531 Tacc1 protein_coding protein_coding MGP_AJ_T0088532.1 MGP_AJ_G0033460.1 mouse_genomes_project 8 22347483 22394679 - MGP_AJ_P0088532 Tacc1 protein_coding protein_coding MGP_AJ_T0090050.1 MGP_AJ_G0033926.1 mouse_genomes_project 8 90832678 90866699 - MGP_AJ_P0090050 Ces1d protein_coding protein_coding MGP_AJ_T0090051.1 MGP_AJ_G0033926.1 mouse_genomes_project 8 90832913 90836665 - Ces1d protein_coding processed_transcript MGP_AJ_T0090052.1 MGP_AJ_G0033926.1 mouse_genomes_project 8 90832939 90842659 - Ces1d protein_coding processed_transcript MGP_AJ_T0090053.1 MGP_AJ_G0033926.1 mouse_genomes_project 8 90863665 90866638 - Ces1d protein_coding processed_transcript MGP_AJ_T0089450.1 MGP_AJ_G0033742.1 mouse_genomes_project 8 69099029 69148052 - MGP_AJ_P0089450 Unc13a protein_coding protein_coding MGP_AJ_T0089451.1 MGP_AJ_G0033742.1 mouse_genomes_project 8 69103666 69148031 - MGP_AJ_P0089451 Unc13a protein_coding protein_coding MGP_AJ_T0089452.1 MGP_AJ_G0033742.1 mouse_genomes_project 8 69104035 69113988 - MGP_AJ_P0089452 Unc13a protein_coding unknown_likely_coding MGP_AJ_T0089453.1 MGP_AJ_G0033742.1 mouse_genomes_project 8 69110886 69117937 - MGP_AJ_P0089453 Unc13a protein_coding nonsense_mediated_decay MGP_AJ_T0089454.1 MGP_AJ_G0033742.1 mouse_genomes_project 8 69111152 69119108 - Unc13a protein_coding retained_intron MGP_AJ_T0089455.1 MGP_AJ_G0033742.1 mouse_genomes_project 8 69117999 69122474 - MGP_AJ_P0089455 Unc13a protein_coding protein_coding MGP_AJ_T0089456.1 MGP_AJ_G0033742.1 mouse_genomes_project 8 69127640 69148024 - MGP_AJ_P0089456 Unc13a protein_coding unknown_likely_coding MGP_AJ_T0089457.1 MGP_AJ_G0033742.1 mouse_genomes_project 8 69130127 69134794 - MGP_AJ_P0089457 Unc13a protein_coding protein_coding MGP_AJ_T0089458.1 MGP_AJ_G0033742.1 mouse_genomes_project 8 69136639 69148036 - Unc13a protein_coding retained_intron MGP_AJ_T0089459.1 MGP_AJ_G0033742.1 mouse_genomes_project 8 69136644 69144380 - Unc13a protein_coding retained_intron MGP_AJ_T0089336.1 MGP_AJ_G0033705.1 mouse_genomes_project 8 68128328 68150712 + MGP_AJ_P0089336 Pde4c protein_coding protein_coding MGP_AJ_T0089337.1 MGP_AJ_G0033705.1 mouse_genomes_project 8 68128672 68155848 + MGP_AJ_P0089337 Pde4c protein_coding protein_coding MGP_AJ_T0089338.1 MGP_AJ_G0033705.1 mouse_genomes_project 8 68128673 68155833 + MGP_AJ_P0089338 Pde4c protein_coding protein_coding MGP_AJ_T0089339.1 MGP_AJ_G0033705.1 mouse_genomes_project 8 68134769 68150559 + Pde4c protein_coding processed_transcript MGP_AJ_T0089340.1 MGP_AJ_G0033705.1 mouse_genomes_project 8 68147744 68155135 + Pde4c protein_coding retained_intron MGP_AJ_T0089341.1 MGP_AJ_G0033705.1 mouse_genomes_project 8 68152552 68155475 + Pde4c protein_coding retained_intron MGP_AJ_T0090227.1 MGP_AJ_G0033986.1 mouse_genomes_project 8 102189862 102210560 - MGP_AJ_P0090227 protein_coding protein_coding MGP_AJ_T0090228.1 MGP_AJ_G0033986.1 mouse_genomes_project 8 102190163 102210538 - MGP_AJ_P0090228 protein_coding protein_coding MGP_AJ_T0090229.1 MGP_AJ_G0033986.1 mouse_genomes_project 8 102190904 102210651 - MGP_AJ_P0090229 protein_coding protein_coding MGP_AJ_T0101478.1 MGP_AJ_G0039444.1 mouse_genomes_project 8 30926085 30926229 + Gm23123 snoRNA snoRNA MGP_AJ_T0089429.1 MGP_AJ_G0033733.1 mouse_genomes_project 8 68968862 68982545 - MGP_AJ_P0089429 Plvap protein_coding protein_coding MGP_AJ_T0088442.1 MGP_AJ_G0033437.1 mouse_genomes_project 8 19851303 19899762 - MGP_AJ_P0088442 Ikbkb protein_coding protein_coding MGP_AJ_T0088443.1 MGP_AJ_G0033437.1 mouse_genomes_project 8 19851304 19899724 - MGP_AJ_P0088443 Ikbkb protein_coding nonsense_mediated_decay MGP_AJ_T0088444.1 MGP_AJ_G0033437.1 mouse_genomes_project 8 19851304 19899718 - MGP_AJ_P0088444 Ikbkb protein_coding nonsense_mediated_decay MGP_AJ_T0088445.1 MGP_AJ_G0033437.1 mouse_genomes_project 8 19851859 19899773 - MGP_AJ_P0088445 Ikbkb protein_coding protein_coding MGP_AJ_T0088446.1 MGP_AJ_G0033437.1 mouse_genomes_project 8 19852199 19853574 - MGP_AJ_P0088446 Ikbkb protein_coding protein_coding MGP_AJ_T0088447.1 MGP_AJ_G0033437.1 mouse_genomes_project 8 19852448 19899762 - Ikbkb protein_coding retained_intron MGP_AJ_T0088448.1 MGP_AJ_G0033437.1 mouse_genomes_project 8 19860102 19861118 - Ikbkb protein_coding retained_intron MGP_AJ_T0088449.1 MGP_AJ_G0033437.1 mouse_genomes_project 8 19868075 19899724 - Ikbkb protein_coding retained_intron MGP_AJ_T0088450.1 MGP_AJ_G0033437.1 mouse_genomes_project 8 19873305 19899723 - Ikbkb protein_coding retained_intron MGP_AJ_T0088451.1 MGP_AJ_G0033437.1 mouse_genomes_project 8 19874850 19886095 - MGP_AJ_P0088451 Ikbkb protein_coding protein_coding MGP_AJ_T0088452.1 MGP_AJ_G0033437.1 mouse_genomes_project 8 19881160 19899743 - Ikbkb protein_coding retained_intron MGP_AJ_T0088453.1 MGP_AJ_G0033437.1 mouse_genomes_project 8 19883869 19899758 - Ikbkb protein_coding retained_intron MGP_AJ_T0088454.1 MGP_AJ_G0033437.1 mouse_genomes_project 8 19894562 19899747 - Ikbkb protein_coding retained_intron MGP_AJ_T0088455.1 MGP_AJ_G0033437.1 mouse_genomes_project 8 19895639 19899709 - Ikbkb protein_coding processed_transcript MGP_AJ_T0090225.1 MGP_AJ_G0033984.1 mouse_genomes_project 8 102140077 102155241 + MGP_AJ_P0090225 Cklf protein_coding protein_coding MGP_AJ_T0088720.1 MGP_AJ_G0033528.1 mouse_genomes_project 8 36359440 36500718 + MGP_AJ_P0088720 Tusc3 protein_coding protein_coding MGP_AJ_T0100235.1 MGP_AJ_G0038201.1 mouse_genomes_project 8 108495525 108495632 - Gm23627 snRNA snRNA MGP_AJ_T0015974.1 MGP_AJ_G0014069.1 mouse_genomes_project 8 18028582 18033295 - processed_pseudogene processed_pseudogene MGP_AJ_T0088168.1 MGP_AJ_G0033328.1 mouse_genomes_project 8 6900383 6929762 + MGP_AJ_P0088168 Tnfsf13b protein_coding protein_coding MGP_AJ_T0005397.1 MGP_AJ_G0004574.1 mouse_genomes_project 8 120135930 120136864 + Gm20406 antisense antisense MGP_AJ_T0090010.1 MGP_AJ_G0033913.1 mouse_genomes_project 8 88702663 88721770 - MGP_AJ_P0090010 Aktip protein_coding protein_coding MGP_AJ_T0090014.1 MGP_AJ_G0033913.1 mouse_genomes_project 8 88714117 88725638 - MGP_AJ_P0090014 Aktip protein_coding protein_coding MGP_AJ_T0090015.1 MGP_AJ_G0033913.1 mouse_genomes_project 8 88714117 88725115 - MGP_AJ_P0090015 Aktip protein_coding protein_coding MGP_AJ_T0090016.1 MGP_AJ_G0033913.1 mouse_genomes_project 8 88715087 88725196 - MGP_AJ_P0090016 Aktip protein_coding protein_coding MGP_AJ_T0090017.1 MGP_AJ_G0033913.1 mouse_genomes_project 8 88715249 88725200 - MGP_AJ_P0090017 Aktip protein_coding protein_coding MGP_AJ_T0090018.1 MGP_AJ_G0033913.1 mouse_genomes_project 8 88721703 88722509 - Aktip protein_coding processed_transcript MGP_AJ_T0002336.1 MGP_AJ_G0002246.1 mouse_genomes_project 8 103618917 103620031 + TEC TEC MGP_AJ_T0090973.1 MGP_AJ_G0034230.1 mouse_genomes_project 8 121602371 121618997 + MGP_AJ_P0090973 Zfp276 protein_coding protein_coding MGP_AJ_T0090974.1 MGP_AJ_G0034230.1 mouse_genomes_project 8 121602447 121605813 + Zfp276 protein_coding retained_intron MGP_AJ_T0090975.1 MGP_AJ_G0034230.1 mouse_genomes_project 8 121602460 121618995 + Zfp276 protein_coding retained_intron MGP_AJ_T0090976.1 MGP_AJ_G0034230.1 mouse_genomes_project 8 121602862 121614284 + MGP_AJ_P0090976 Zfp276 protein_coding protein_coding MGP_AJ_T0090977.1 MGP_AJ_G0034230.1 mouse_genomes_project 8 121606612 121617382 + Zfp276 protein_coding retained_intron MGP_AJ_T0090978.1 MGP_AJ_G0034230.1 mouse_genomes_project 8 121607744 121617177 + Zfp276 protein_coding retained_intron MGP_AJ_T0090979.1 MGP_AJ_G0034230.1 mouse_genomes_project 8 121614034 121614857 + Zfp276 protein_coding retained_intron MGP_AJ_T0089092.1 MGP_AJ_G0033636.1 mouse_genomes_project 8 64011427 64020793 + MGP_AJ_P0089092 Npy1r protein_coding protein_coding MGP_AJ_T0090368.1 MGP_AJ_G0034042.1 mouse_genomes_project 8 103836456 103844028 - MGP_AJ_P0090368 Cenpt protein_coding protein_coding MGP_AJ_T0010959.1 MGP_AJ_G0009081.1 mouse_genomes_project 8 33033617 33033744 - Gm44474 miRNA miRNA MGP_AJ_T0090938.1 MGP_AJ_G0034221.1 mouse_genomes_project 8 121447350 121450158 + MGP_AJ_P0090938 Rpl13 protein_coding protein_coding MGP_AJ_T0090939.1 MGP_AJ_G0034221.1 mouse_genomes_project 8 121447653 121449382 + Rpl13 protein_coding retained_intron MGP_AJ_T0090158.1 MGP_AJ_G0033960.1 mouse_genomes_project 8 92708287 92739264 + MGP_AJ_P0090158 Adgrg3 protein_coding protein_coding MGP_AJ_T0015960.1 MGP_AJ_G0014055.1 mouse_genomes_project 8 3905753 3906592 - processed_pseudogene processed_pseudogene MGP_AJ_T0090816.1 MGP_AJ_G0034191.1 mouse_genomes_project 8 119837695 119847475 - MGP_AJ_P0090816 1700018B08Rik protein_coding protein_coding MGP_AJ_T0090817.1 MGP_AJ_G0034191.1 mouse_genomes_project 8 119837743 119847390 - MGP_AJ_P0090817 1700018B08Rik protein_coding nonsense_mediated_decay MGP_AJ_T0090818.1 MGP_AJ_G0034191.1 mouse_genomes_project 8 119837743 119847390 - MGP_AJ_P0090818 1700018B08Rik protein_coding nonsense_mediated_decay MGP_AJ_T0090819.1 MGP_AJ_G0034191.1 mouse_genomes_project 8 119838729 119849841 - MGP_AJ_P0090819 1700018B08Rik protein_coding protein_coding MGP_AJ_T0009175.1 MGP_AJ_G0007370.1 mouse_genomes_project 8 97150498 97158500 + lincRNA lincRNA MGP_AJ_T0088745.1 MGP_AJ_G0033534.1 mouse_genomes_project 8 37816472 37855238 + MGP_AJ_P0088745 Vps37a protein_coding protein_coding MGP_AJ_T0089868.1 MGP_AJ_G0033868.1 mouse_genomes_project 8 82538309 82550590 + MGP_AJ_P0089868 Hook2 protein_coding protein_coding MGP_AJ_T0090161.1 MGP_AJ_G0033963.1 mouse_genomes_project 8 92796018 92832287 - MGP_AJ_P0090161 Kifc3 protein_coding protein_coding MGP_AJ_T0090162.1 MGP_AJ_G0033963.1 mouse_genomes_project 8 92796018 92809515 - MGP_AJ_P0090162 Kifc3 protein_coding protein_coding MGP_AJ_T0090163.1 MGP_AJ_G0033963.1 mouse_genomes_project 8 92796018 92832287 - MGP_AJ_P0090163 Kifc3 protein_coding protein_coding MGP_AJ_T0089845.1 MGP_AJ_G0033864.1 mouse_genomes_project 8 82493578 82503172 + MGP_AJ_P0089845 Rtbdn protein_coding protein_coding MGP_AJ_T0089846.1 MGP_AJ_G0033864.1 mouse_genomes_project 8 82493578 82503172 + MGP_AJ_P0089846 Rtbdn protein_coding protein_coding MGP_AJ_T0089847.1 MGP_AJ_G0033864.1 mouse_genomes_project 8 82496365 82503172 + MGP_AJ_P0089847 Rtbdn protein_coding protein_coding MGP_AJ_T0089848.1 MGP_AJ_G0033864.1 mouse_genomes_project 8 82497686 82503080 + MGP_AJ_P0089848 Rtbdn protein_coding protein_coding MGP_AJ_T0090663.1 MGP_AJ_G0034144.1 mouse_genomes_project 8 114801968 114967050 - MGP_AJ_P0090663 Cdyl2 protein_coding protein_coding MGP_AJ_T0090765.1 MGP_AJ_G0034180.1 mouse_genomes_project 8 118506274 118835917 + MGP_AJ_P0090765 Gse1 protein_coding protein_coding MGP_AJ_T0090766.1 MGP_AJ_G0034180.1 mouse_genomes_project 8 118770634 118863665 + MGP_AJ_P0090766 Gse1 protein_coding protein_coding MGP_AJ_T0090767.1 MGP_AJ_G0034180.1 mouse_genomes_project 8 118818151 118861755 + MGP_AJ_P0090767 Gse1 protein_coding protein_coding MGP_AJ_T0090768.1 MGP_AJ_G0034180.1 mouse_genomes_project 8 118819723 118861601 + MGP_AJ_P0090768 Gse1 protein_coding protein_coding MGP_AJ_T0090769.1 MGP_AJ_G0034180.1 mouse_genomes_project 8 118853555 118855547 + Gse1 protein_coding retained_intron MGP_AJ_T0090770.1 MGP_AJ_G0034180.1 mouse_genomes_project 8 118853603 118857485 + Gse1 protein_coding processed_transcript MGP_AJ_T0091031.1 MGP_AJ_G0034250.1 mouse_genomes_project 8 122751375 122823753 - MGP_AJ_P0091031 Pgbd5 protein_coding protein_coding MGP_AJ_T0091032.1 MGP_AJ_G0034250.1 mouse_genomes_project 8 122751375 122818048 - MGP_AJ_P0091032 Pgbd5 protein_coding protein_coding MGP_AJ_T0091033.1 MGP_AJ_G0034250.1 mouse_genomes_project 8 122751379 122818450 - MGP_AJ_P0091033 Pgbd5 protein_coding protein_coding MGP_AJ_T0091034.1 MGP_AJ_G0034250.1 mouse_genomes_project 8 122752337 122775389 - MGP_AJ_P0091034 Pgbd5 protein_coding protein_coding MGP_AJ_T0091035.1 MGP_AJ_G0034250.1 mouse_genomes_project 8 122754162 122757762 - Pgbd5 protein_coding processed_transcript MGP_AJ_T0091036.1 MGP_AJ_G0034250.1 mouse_genomes_project 8 122754178 122757323 - Pgbd5 protein_coding retained_intron MGP_AJ_T0088321.1 MGP_AJ_G0033376.1 mouse_genomes_project 8 11066943 11828538 + MGP_AJ_P0088321 Dlgap2 protein_coding protein_coding MGP_AJ_T0088322.1 MGP_AJ_G0033376.1 mouse_genomes_project 8 11066953 11829110 + MGP_AJ_P0088322 Dlgap2 protein_coding protein_coding MGP_AJ_T0088323.1 MGP_AJ_G0033376.1 mouse_genomes_project 8 11157182 11828138 + MGP_AJ_P0088323 Dlgap2 protein_coding protein_coding MGP_AJ_T0088324.1 MGP_AJ_G0033376.1 mouse_genomes_project 8 11157182 11828538 + MGP_AJ_P0088324 Dlgap2 protein_coding protein_coding MGP_AJ_T0088325.1 MGP_AJ_G0033376.1 mouse_genomes_project 8 11361588 11489109 + Dlgap2 protein_coding processed_transcript MGP_AJ_T0088326.1 MGP_AJ_G0033376.1 mouse_genomes_project 8 11361802 11512323 + Dlgap2 protein_coding processed_transcript MGP_AJ_T0088327.1 MGP_AJ_G0033376.1 mouse_genomes_project 8 11361850 11813117 + Dlgap2 protein_coding retained_intron MGP_AJ_T0088328.1 MGP_AJ_G0033376.1 mouse_genomes_project 8 11725301 11743424 + Dlgap2 protein_coding processed_transcript MGP_AJ_T0088330.1 MGP_AJ_G0033376.1 mouse_genomes_project 8 11760305 11828828 + Dlgap2 protein_coding processed_transcript MGP_AJ_T0005376.1 MGP_AJ_G0004556.1 mouse_genomes_project 8 102066799 102073599 - Gm10631 antisense antisense MGP_AJ_T0090269.1 MGP_AJ_G0034003.1 mouse_genomes_project 8 102924735 102933269 + MGP_AJ_P0090269 Ces2f protein_coding protein_coding MGP_AJ_T0005320.1 MGP_AJ_G0004511.1 mouse_genomes_project 8 587509 588658 - antisense antisense MGP_AJ_T0089278.1 MGP_AJ_G0033687.1 mouse_genomes_project 8 67777076 67835536 - Crtc1 protein_coding retained_intron MGP_AJ_T0089279.1 MGP_AJ_G0033687.1 mouse_genomes_project 8 67777076 67835536 - MGP_AJ_P0089279 Crtc1 protein_coding protein_coding MGP_AJ_T0089280.1 MGP_AJ_G0033687.1 mouse_genomes_project 8 67792558 67797693 - Crtc1 protein_coding retained_intron MGP_AJ_T0089281.1 MGP_AJ_G0033687.1 mouse_genomes_project 8 67799743 67835532 - Crtc1 protein_coding retained_intron MGP_AJ_T0089282.1 MGP_AJ_G0033687.1 mouse_genomes_project 8 67801021 67827246 - Crtc1 protein_coding processed_transcript MGP_AJ_T0010941.1 MGP_AJ_G0009063.1 mouse_genomes_project 8 5578364 5578434 - Mir7654 miRNA miRNA MGP_AJ_T0009188.1 MGP_AJ_G0007380.1 mouse_genomes_project 8 118480406 118503968 - A330074K22Rik lincRNA lincRNA MGP_AJ_T0098743.1 MGP_AJ_G0036727.1 mouse_genomes_project 8 69652085 69652172 + Gm24747 rRNA rRNA MGP_AJ_T0090096.1 MGP_AJ_G0033941.1 mouse_genomes_project 8 91898513 91998653 + MGP_AJ_P0090096 Nup93 protein_coding protein_coding MGP_AJ_T0090097.1 MGP_AJ_G0033941.1 mouse_genomes_project 8 91911467 91998862 + MGP_AJ_P0090097 Nup93 protein_coding protein_coding MGP_AJ_T0089910.1 MGP_AJ_G0033882.1 mouse_genomes_project 8 82821516 82829665 + MGP_AJ_P0089910 Orc6 protein_coding protein_coding MGP_AJ_T0098746.1 MGP_AJ_G0036730.1 mouse_genomes_project 8 126047392 126047510 + Gm22968 rRNA rRNA MGP_AJ_T0090370.1 MGP_AJ_G0034044.1 mouse_genomes_project 8 103852779 103873619 + MGP_AJ_P0090370 Nutf2-ps1 protein_coding unknown_likely_coding MGP_AJ_T0011726.1 MGP_AJ_G0009848.1 mouse_genomes_project 8 103182130 103182219 + Gm24629 misc_RNA misc_RNA MGP_AJ_T0091012.1 MGP_AJ_G0034239.1 mouse_genomes_project 8 121896712 121914758 + MGP_AJ_P0091012 Gas8 protein_coding protein_coding MGP_AJ_T0089809.1 MGP_AJ_G0033856.1 mouse_genomes_project 8 82385673 82390762 - MGP_AJ_P0089809 Calr protein_coding protein_coding MGP_AJ_T0089810.1 MGP_AJ_G0033856.1 mouse_genomes_project 8 82386417 82388741 - Calr protein_coding retained_intron MGP_AJ_T0089811.1 MGP_AJ_G0033856.1 mouse_genomes_project 8 82389261 82390658 - Calr protein_coding retained_intron MGP_AJ_T0089812.1 MGP_AJ_G0033856.1 mouse_genomes_project 8 82389575 82390654 - Calr protein_coding retained_intron MGP_AJ_T0090230.1 MGP_AJ_G0033987.1 mouse_genomes_project 8 102225953 102226174 + MGP_AJ_P0090230 Gm11020 protein_coding protein_coding MGP_AJ_T0011711.1 MGP_AJ_G0009833.1 mouse_genomes_project 8 4421546 4421748 + Gm27545 misc_RNA misc_RNA MGP_AJ_T0098483.1 MGP_AJ_G0036467.1 mouse_genomes_project 8 114998717 115000053 - pseudogene pseudogene MGP_AJ_T0010984.1 MGP_AJ_G0009106.1 mouse_genomes_project 8 81753108 81753195 + Mir27a miRNA miRNA MGP_AJ_T0090164.1 MGP_AJ_G0033964.1 mouse_genomes_project 8 92930020 92999883 - MGP_AJ_P0090164 Cngb1 protein_coding protein_coding MGP_AJ_T0090165.1 MGP_AJ_G0033964.1 mouse_genomes_project 8 92931956 92973575 - MGP_AJ_P0090165 Cngb1 protein_coding protein_coding MGP_AJ_T0090166.1 MGP_AJ_G0033964.1 mouse_genomes_project 8 92931962 92973595 - MGP_AJ_P0090166 Cngb1 protein_coding protein_coding MGP_AJ_T0090167.1 MGP_AJ_G0033964.1 mouse_genomes_project 8 92982414 92997157 - Cngb1 protein_coding retained_intron MGP_AJ_T0090168.1 MGP_AJ_G0033964.1 mouse_genomes_project 8 92982414 92997157 - Cngb1 protein_coding retained_intron MGP_AJ_T0090169.1 MGP_AJ_G0033964.1 mouse_genomes_project 8 92982414 92985792 - Cngb1 protein_coding retained_intron MGP_AJ_T0090170.1 MGP_AJ_G0033964.1 mouse_genomes_project 8 92982414 92999883 - MGP_AJ_P0090170 Cngb1 protein_coding protein_coding MGP_AJ_T0090171.1 MGP_AJ_G0033964.1 mouse_genomes_project 8 92982414 92986206 - MGP_AJ_P0090171 Cngb1 protein_coding protein_coding MGP_AJ_T0090172.1 MGP_AJ_G0033964.1 mouse_genomes_project 8 92982417 92999868 - Cngb1 protein_coding retained_intron MGP_AJ_T0090956.1 MGP_AJ_G0034226.1 mouse_genomes_project 8 121558489 121568462 + MGP_AJ_P0090956 Spata33 protein_coding protein_coding MGP_AJ_T0015996.1 MGP_AJ_G0014091.1 mouse_genomes_project 8 43590224 43591289 - processed_pseudogene processed_pseudogene MGP_AJ_T0100223.1 MGP_AJ_G0038189.1 mouse_genomes_project 8 83824681 83824779 + Gm24490 snRNA snRNA MGP_AJ_T0088756.1 MGP_AJ_G0033540.1 mouse_genomes_project 8 38171017 38231061 + MGP_AJ_P0088756 Slc7a2 protein_coding protein_coding MGP_AJ_T0088757.1 MGP_AJ_G0033540.1 mouse_genomes_project 8 38171033 38235340 + MGP_AJ_P0088757 Slc7a2 protein_coding protein_coding MGP_AJ_T0088758.1 MGP_AJ_G0033540.1 mouse_genomes_project 8 38171199 38211826 + MGP_AJ_P0088758 Slc7a2 protein_coding protein_coding MGP_AJ_T0088759.1 MGP_AJ_G0033540.1 mouse_genomes_project 8 38183058 38235102 + MGP_AJ_P0088759 Slc7a2 protein_coding protein_coding MGP_AJ_T0088760.1 MGP_AJ_G0033540.1 mouse_genomes_project 8 38211279 38230731 + MGP_AJ_P0088760 Slc7a2 protein_coding protein_coding MGP_AJ_T0101480.1 MGP_AJ_G0039446.1 mouse_genomes_project 8 36327478 36327610 - Gm23128 snoRNA snoRNA MGP_AJ_T0005386.1 MGP_AJ_G0004563.1 mouse_genomes_project 8 108842196 108847029 + Gm15894 antisense antisense MGP_AJ_T0088371.1 MGP_AJ_G0033387.1 mouse_genomes_project 8 15850265 15868456 - Xkr5 protein_coding processed_transcript MGP_AJ_T0088372.1 MGP_AJ_G0033387.1 mouse_genomes_project 8 15850265 15868560 - MGP_AJ_P0088372 Xkr5 protein_coding protein_coding MGP_AJ_T0088373.1 MGP_AJ_G0033387.1 mouse_genomes_project 8 15850265 15868558 - MGP_AJ_P0088373 Xkr5 protein_coding protein_coding MGP_AJ_T0088374.1 MGP_AJ_G0033387.1 mouse_genomes_project 8 15850268 15868501 - MGP_AJ_P0088374 Xkr5 protein_coding nonsense_mediated_decay MGP_AJ_T0088375.1 MGP_AJ_G0033387.1 mouse_genomes_project 8 15850624 15868522 - MGP_AJ_P0088375 Xkr5 protein_coding nonsense_mediated_decay MGP_AJ_T0005396.1 MGP_AJ_G0004573.1 mouse_genomes_project 8 119847642 119849002 + Gm27045 antisense antisense MGP_AJ_T0011723.1 MGP_AJ_G0009845.1 mouse_genomes_project 8 85176503 85176860 + Gm24841 misc_RNA misc_RNA MGP_AJ_T0088964.1 MGP_AJ_G0033598.1 mouse_genomes_project 8 53211034 53252234 - MGP_AJ_P0088964 Adam29 protein_coding protein_coding MGP_AJ_T0089680.1 MGP_AJ_G0033822.1 mouse_genomes_project 8 81253964 81262112 + MGP_AJ_P0089680 Ddx39 protein_coding protein_coding MGP_AJ_T0089681.1 MGP_AJ_G0033822.1 mouse_genomes_project 8 81254055 81262038 + Ddx39 protein_coding retained_intron MGP_AJ_T0089682.1 MGP_AJ_G0033822.1 mouse_genomes_project 8 81254055 81262039 + MGP_AJ_P0089682 Ddx39 protein_coding nonsense_mediated_decay MGP_AJ_T0089683.1 MGP_AJ_G0033822.1 mouse_genomes_project 8 81254059 81265678 + MGP_AJ_P0089683 Ddx39 protein_coding protein_coding MGP_AJ_T0089684.1 MGP_AJ_G0033822.1 mouse_genomes_project 8 81254335 81262112 + MGP_AJ_P0089684 Ddx39 protein_coding protein_coding MGP_AJ_T0089685.1 MGP_AJ_G0033822.1 mouse_genomes_project 8 81258376 81260054 + Ddx39 protein_coding retained_intron MGP_AJ_T0088216.1 MGP_AJ_G0033346.1 mouse_genomes_project 8 9701024 9813069 + MGP_AJ_P0088216 Atp11a protein_coding protein_coding MGP_AJ_T0088217.1 MGP_AJ_G0033346.1 mouse_genomes_project 8 9701026 9813069 + MGP_AJ_P0088217 Atp11a protein_coding protein_coding MGP_AJ_T0088218.1 MGP_AJ_G0033346.1 mouse_genomes_project 8 9701079 9804061 + MGP_AJ_P0088218 Atp11a protein_coding nonsense_mediated_decay MGP_AJ_T0088219.1 MGP_AJ_G0033346.1 mouse_genomes_project 8 9755766 9758734 + Atp11a protein_coding retained_intron MGP_AJ_T0088220.1 MGP_AJ_G0033346.1 mouse_genomes_project 8 9766742 9772880 + Atp11a protein_coding retained_intron MGP_AJ_T0088221.1 MGP_AJ_G0033346.1 mouse_genomes_project 8 9779510 9813008 + MGP_AJ_P0088221 Atp11a protein_coding protein_coding MGP_AJ_T0088222.1 MGP_AJ_G0033346.1 mouse_genomes_project 8 9792200 9801611 + MGP_AJ_P0088222 Atp11a protein_coding protein_coding MGP_AJ_T0088223.1 MGP_AJ_G0033346.1 mouse_genomes_project 8 9794186 9796070 + Atp11a protein_coding processed_transcript MGP_AJ_T0088224.1 MGP_AJ_G0033346.1 mouse_genomes_project 8 9801300 9806546 + MGP_AJ_P0088224 Atp11a protein_coding protein_coding MGP_AJ_T0088225.1 MGP_AJ_G0033346.1 mouse_genomes_project 8 9802302 9806543 + MGP_AJ_P0088225 Atp11a protein_coding protein_coding MGP_AJ_T0088226.1 MGP_AJ_G0033346.1 mouse_genomes_project 8 9805905 9809911 + Atp11a protein_coding retained_intron MGP_AJ_T0011013.1 MGP_AJ_G0009135.1 mouse_genomes_project 8 109314758 109314840 + Gm23193 miRNA miRNA MGP_AJ_T0101460.1 MGP_AJ_G0039426.1 mouse_genomes_project 8 3144570 3144714 - Gm24288 snoRNA snoRNA MGP_AJ_T0009135.1 MGP_AJ_G0007347.1 mouse_genomes_project 8 84457276 84457947 - Gm27168 lincRNA lincRNA MGP_AJ_T0090519.1 MGP_AJ_G0034100.1 mouse_genomes_project 8 108176406 108178397 + MGP_AJ_P0090519 Gm21964 protein_coding protein_coding MGP_AJ_T0089561.1 MGP_AJ_G0033778.1 mouse_genomes_project 8 72595036 72613955 + MGP_AJ_P0089561 Mcm5 protein_coding protein_coding MGP_AJ_T0009071.1 MGP_AJ_G0007294.1 mouse_genomes_project 8 4273533 4320938 + Gm17215 lincRNA lincRNA MGP_AJ_T0088968.1 MGP_AJ_G0033601.1 mouse_genomes_project 8 53874589 53895144 - MGP_AJ_P0088968 Cep44 protein_coding protein_coding MGP_AJ_T0088969.1 MGP_AJ_G0033601.1 mouse_genomes_project 8 53874589 53889746 - MGP_AJ_P0088969 Cep44 protein_coding protein_coding MGP_AJ_T0088970.1 MGP_AJ_G0033601.1 mouse_genomes_project 8 53887187 53895130 - MGP_AJ_P0088970 Cep44 protein_coding protein_coding MGP_AJ_T0088971.1 MGP_AJ_G0033601.1 mouse_genomes_project 8 53888474 53895086 - MGP_AJ_P0088971 Cep44 protein_coding protein_coding MGP_AJ_T0088972.1 MGP_AJ_G0033601.1 mouse_genomes_project 8 53888541 53895159 - MGP_AJ_P0088972 Cep44 protein_coding protein_coding MGP_AJ_T0088973.1 MGP_AJ_G0033601.1 mouse_genomes_project 8 53889732 53895334 - MGP_AJ_P0088973 Cep44 protein_coding protein_coding MGP_AJ_T0088974.1 MGP_AJ_G0033601.1 mouse_genomes_project 8 53893248 53894525 - Cep44 protein_coding processed_transcript MGP_AJ_T0088975.1 MGP_AJ_G0033601.1 mouse_genomes_project 8 53893596 53895090 - Cep44 protein_coding processed_transcript MGP_AJ_T0101462.1 MGP_AJ_G0039428.1 mouse_genomes_project 8 10847259 10847389 + Gm24698 snoRNA snoRNA MGP_AJ_T0005334.1 MGP_AJ_G0004521.1 mouse_genomes_project 8 11957177 11957698 - Gm16350 antisense antisense MGP_AJ_T0088456.1 MGP_AJ_G0033438.1 mouse_genomes_project 8 19945605 19975350 + MGP_AJ_P0088456 Plat protein_coding protein_coding MGP_AJ_T0090761.1 MGP_AJ_G0034179.1 mouse_genomes_project 8 118448411 118459544 - MGP_AJ_P0090761 Fam92b protein_coding protein_coding MGP_AJ_T0090762.1 MGP_AJ_G0034179.1 mouse_genomes_project 8 118449400 118459441 - Fam92b protein_coding retained_intron MGP_AJ_T0090763.1 MGP_AJ_G0034179.1 mouse_genomes_project 8 118453754 118459505 - MGP_AJ_P0090763 Fam92b protein_coding protein_coding MGP_AJ_T0090764.1 MGP_AJ_G0034179.1 mouse_genomes_project 8 118456794 118459525 - Fam92b protein_coding retained_intron MGP_AJ_T0002325.1 MGP_AJ_G0002236.1 mouse_genomes_project 8 1448301 1448515 - TEC TEC MGP_AJ_T0090362.1 MGP_AJ_G0034038.1 mouse_genomes_project 8 103694742 103696696 + MGP_AJ_P0090362 4933405L10Rik protein_coding protein_coding MGP_AJ_T0089621.1 MGP_AJ_G0033799.1 mouse_genomes_project 8 77973853 77990214 + MGP_AJ_P0089621 Gypa protein_coding protein_coding MGP_AJ_T0090180.1 MGP_AJ_G0033967.1 mouse_genomes_project 8 93025639 93037299 + Usb1 protein_coding retained_intron MGP_AJ_T0090181.1 MGP_AJ_G0033967.1 mouse_genomes_project 8 93025676 93040541 + MGP_AJ_P0090181 Usb1 protein_coding protein_coding MGP_AJ_T0090182.1 MGP_AJ_G0033967.1 mouse_genomes_project 8 93038178 93039858 + Usb1 protein_coding retained_intron MGP_AJ_T0098478.1 MGP_AJ_G0036462.1 mouse_genomes_project 8 77173227 77173786 - pseudogene pseudogene MGP_AJ_T0089906.1 MGP_AJ_G0033879.1 mouse_genomes_project 8 82659017 82670149 - MGP_AJ_P0089906 Zfp791 protein_coding protein_coding MGP_AJ_T0090459.1 MGP_AJ_G0034079.1 mouse_genomes_project 8 105325608 105361807 + Nfat5 protein_coding retained_intron MGP_AJ_T0090460.1 MGP_AJ_G0034079.1 mouse_genomes_project 8 105325608 105405058 + MGP_AJ_P0090460 Nfat5 protein_coding nonsense_mediated_decay MGP_AJ_T0090461.1 MGP_AJ_G0034079.1 mouse_genomes_project 8 105325608 105412322 + MGP_AJ_P0090461 Nfat5 protein_coding nonsense_mediated_decay MGP_AJ_T0090462.1 MGP_AJ_G0034079.1 mouse_genomes_project 8 105325647 105360539 + Nfat5 protein_coding retained_intron MGP_AJ_T0090463.1 MGP_AJ_G0034079.1 mouse_genomes_project 8 105325697 105412313 + MGP_AJ_P0090463 Nfat5 protein_coding protein_coding MGP_AJ_T0090464.1 MGP_AJ_G0034079.1 mouse_genomes_project 8 105325697 105405009 + MGP_AJ_P0090464 Nfat5 protein_coding protein_coding MGP_AJ_T0090465.1 MGP_AJ_G0034079.1 mouse_genomes_project 8 105325964 105405983 + MGP_AJ_P0090465 Nfat5 protein_coding protein_coding MGP_AJ_T0090466.1 MGP_AJ_G0034079.1 mouse_genomes_project 8 105370901 105388570 + Nfat5 protein_coding retained_intron MGP_AJ_T0090467.1 MGP_AJ_G0034079.1 mouse_genomes_project 8 105370901 105400236 + Nfat5 protein_coding retained_intron MGP_AJ_T0090468.1 MGP_AJ_G0034079.1 mouse_genomes_project 8 105371306 105403490 + MGP_AJ_P0090468 Nfat5 protein_coding protein_coding MGP_AJ_T0090469.1 MGP_AJ_G0034079.1 mouse_genomes_project 8 105377185 105394600 + MGP_AJ_P0090469 Nfat5 protein_coding nonsense_mediated_decay MGP_AJ_T0090470.1 MGP_AJ_G0034079.1 mouse_genomes_project 8 105388649 105406361 + MGP_AJ_P0090470 Nfat5 protein_coding protein_coding MGP_AJ_T0102920.1 MGP_AJ_G0040660.1 mouse_genomes_project 8 16400661 16401600 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0015972.1 MGP_AJ_G0014067.1 mouse_genomes_project 8 16619512 16620103 + processed_pseudogene processed_pseudogene MGP_AJ_T0090183.1 MGP_AJ_G0033968.1 mouse_genomes_project 8 93045232 93067264 + MGP_AJ_P0090183 Mmp15 protein_coding protein_coding MGP_AJ_T0098740.1 MGP_AJ_G0036724.1 mouse_genomes_project 8 45257060 45257173 + n-R5s97 rRNA rRNA MGP_AJ_T0089533.1 MGP_AJ_G0033769.1 mouse_genomes_project 8 70108325 70123512 + MGP_AJ_P0089533 Tmem38a protein_coding protein_coding MGP_AJ_T0090814.1 MGP_AJ_G0034189.1 mouse_genomes_project 8 119413673 119416398 + MGP_AJ_P0090814 Foxc2 protein_coding protein_coding MGP_AJ_T0009193.1 MGP_AJ_G0007385.1 mouse_genomes_project 8 119298753 119299017 + Gm28324 lincRNA lincRNA MGP_AJ_T0088432.1 MGP_AJ_G0033429.1 mouse_genomes_project 8 19476635 19562837 + MGP_AJ_P0088432 Tpte protein_coding protein_coding MGP_AJ_T0018496.1 MGP_AJ_G0015705.1 mouse_genomes_project 8 120696150 120698550 + Gm20681 processed_transcript processed_transcript MGP_AJ_T0088268.1 MGP_AJ_G0033355.1 mouse_genomes_project 8 10176660 10208271 - MGP_AJ_P0088268 protein_coding protein_coding MGP_AJ_T0088269.1 MGP_AJ_G0033355.1 mouse_genomes_project 8 10190652 10208271 - MGP_AJ_P0088269 protein_coding protein_coding MGP_AJ_T0088270.1 MGP_AJ_G0033355.1 mouse_genomes_project 8 10196079 10196903 - protein_coding retained_intron MGP_AJ_T0088271.1 MGP_AJ_G0033355.1 mouse_genomes_project 8 10196327 10208180 - MGP_AJ_P0088271 protein_coding protein_coding MGP_AJ_T0088272.1 MGP_AJ_G0033355.1 mouse_genomes_project 8 10196459 10208205 - MGP_AJ_P0088272 protein_coding protein_coding MGP_AJ_T0098475.1 MGP_AJ_G0036459.1 mouse_genomes_project 8 22797750 22798731 + pseudogene pseudogene MGP_AJ_T0009192.1 MGP_AJ_G0007384.1 mouse_genomes_project 8 119172667 119174943 + Gm26878 lincRNA lincRNA MGP_AJ_T0089982.1 MGP_AJ_G0033902.1 mouse_genomes_project 8 85891909 85893781 - Brd7 protein_coding processed_transcript MGP_AJ_T0089983.1 MGP_AJ_G0033902.1 mouse_genomes_project 8 85891920 85923077 - MGP_AJ_P0089983 Brd7 protein_coding protein_coding MGP_AJ_T0089984.1 MGP_AJ_G0033902.1 mouse_genomes_project 8 85893648 85894783 - Brd7 protein_coding processed_transcript MGP_AJ_T0089985.1 MGP_AJ_G0033902.1 mouse_genomes_project 8 85893667 85896349 - Brd7 protein_coding retained_intron MGP_AJ_T0089986.1 MGP_AJ_G0033902.1 mouse_genomes_project 8 85893747 85903696 - Brd7 protein_coding processed_transcript MGP_AJ_T0089987.1 MGP_AJ_G0033902.1 mouse_genomes_project 8 85894410 85903618 - Brd7 protein_coding processed_transcript MGP_AJ_T0089988.1 MGP_AJ_G0033902.1 mouse_genomes_project 8 85918374 85922897 - Brd7 protein_coding processed_transcript MGP_AJ_T0009137.1 MGP_AJ_G0007349.1 mouse_genomes_project 8 84648339 84732922 + Gm27246 lincRNA lincRNA MGP_AJ_T0089342.1 MGP_AJ_G0033706.1 mouse_genomes_project 8 68160513 68163338 + MGP_AJ_P0089342 Rab3a protein_coding protein_coding MGP_AJ_T0089343.1 MGP_AJ_G0033706.1 mouse_genomes_project 8 68161114 68162357 + Rab3a protein_coding retained_intron MGP_AJ_T0015967.1 MGP_AJ_G0014062.1 mouse_genomes_project 8 15565580 15565955 - processed_pseudogene processed_pseudogene MGP_AJ_T0088086.1 MGP_AJ_G0033304.1 mouse_genomes_project 8 835366 844549 - MGP_AJ_P0088086 Cd209b protein_coding nonsense_mediated_decay MGP_AJ_T0088087.1 MGP_AJ_G0033304.1 mouse_genomes_project 8 835368 844538 - MGP_AJ_P0088087 Cd209b protein_coding protein_coding MGP_AJ_T0088088.1 MGP_AJ_G0033304.1 mouse_genomes_project 8 836317 844538 - MGP_AJ_P0088088 Cd209b protein_coding protein_coding MGP_AJ_T0088089.1 MGP_AJ_G0033304.1 mouse_genomes_project 8 836388 844518 - MGP_AJ_P0088089 Cd209b protein_coding protein_coding MGP_AJ_T0091082.1 MGP_AJ_G0034267.1 mouse_genomes_project 8 124081272 124084814 + MGP_AJ_P0091082 Map10 protein_coding protein_coding MGP_AJ_T0009079.1 MGP_AJ_G0007301.1 mouse_genomes_project 8 10153471 10160409 + 2810030D12Rik lincRNA lincRNA MGP_AJ_T0009080.1 MGP_AJ_G0007301.1 mouse_genomes_project 8 10153479 10160421 + 2810030D12Rik lincRNA lincRNA MGP_AJ_T0009081.1 MGP_AJ_G0007301.1 mouse_genomes_project 8 10153503 10154578 + 2810030D12Rik lincRNA lincRNA MGP_AJ_T0009082.1 MGP_AJ_G0007301.1 mouse_genomes_project 8 10153571 10160414 + 2810030D12Rik lincRNA lincRNA MGP_AJ_T0089025.1 MGP_AJ_G0033617.1 mouse_genomes_project 8 58792733 58808441 + MGP_AJ_P0089025 Cbr4 protein_coding protein_coding MGP_AJ_T0089026.1 MGP_AJ_G0033617.1 mouse_genomes_project 8 58792734 58796576 + MGP_AJ_P0089026 Cbr4 protein_coding protein_coding MGP_AJ_T0089027.1 MGP_AJ_G0033617.1 mouse_genomes_project 8 58792754 58796894 + Cbr4 protein_coding retained_intron MGP_AJ_T0089028.1 MGP_AJ_G0033617.1 mouse_genomes_project 8 58792768 58808288 + Cbr4 protein_coding retained_intron MGP_AJ_T0089029.1 MGP_AJ_G0033617.1 mouse_genomes_project 8 58796398 58808288 + Cbr4 protein_coding retained_intron MGP_AJ_T0089030.1 MGP_AJ_G0033617.1 mouse_genomes_project 8 58799827 58808348 + Cbr4 protein_coding retained_intron MGP_AJ_T0088779.1 MGP_AJ_G0033544.1 mouse_genomes_project 8 38549883 38644138 + MGP_AJ_P0088779 Pcm1 protein_coding unknown_likely_coding MGP_AJ_T0088780.1 MGP_AJ_G0033544.1 mouse_genomes_project 8 38549948 38646225 + MGP_AJ_P0088780 Pcm1 protein_coding protein_coding MGP_AJ_T0101492.1 MGP_AJ_G0039458.1 mouse_genomes_project 8 60392534 60392668 - Gm24236 snoRNA snoRNA MGP_AJ_T0090671.1 MGP_AJ_G0034147.1 mouse_genomes_project 8 115182559 115202224 + MGP_AJ_P0090671 Atmin protein_coding protein_coding MGP_AJ_T0090699.1 MGP_AJ_G0034160.1 mouse_genomes_project 8 117659212 117681786 + MGP_AJ_P0090699 Mlycd protein_coding protein_coding MGP_AJ_T0090700.1 MGP_AJ_G0034160.1 mouse_genomes_project 8 117659232 117681771 + Mlycd protein_coding retained_intron MGP_AJ_T0009141.1 MGP_AJ_G0007352.1 mouse_genomes_project 8 84891109 84909641 - Gm27207 lincRNA lincRNA MGP_AJ_T0089669.1 MGP_AJ_G0033820.1 mouse_genomes_project 8 81206805 81211241 + Ptger1 protein_coding retained_intron MGP_AJ_T0089670.1 MGP_AJ_G0033820.1 mouse_genomes_project 8 81206835 81212723 + MGP_AJ_P0089670 Ptger1 protein_coding protein_coding MGP_AJ_T0090991.1 MGP_AJ_G0034233.1 mouse_genomes_project 8 121728352 121757554 + MGP_AJ_P0090991 Tcf25 protein_coding protein_coding MGP_AJ_T0090992.1 MGP_AJ_G0034233.1 mouse_genomes_project 8 121728363 121759835 + MGP_AJ_P0090992 Tcf25 protein_coding protein_coding MGP_AJ_T0090312.1 MGP_AJ_G0034018.1 mouse_genomes_project 8 103275335 103283101 + MGP_AJ_P0090312 E2f4 protein_coding protein_coding MGP_AJ_T0010940.1 MGP_AJ_G0009062.1 mouse_genomes_project 8 2609798 2609867 + Gm22565 miRNA miRNA MGP_AJ_T0011728.1 MGP_AJ_G0009850.1 mouse_genomes_project 8 110739199 110739304 + Gm22664 misc_RNA misc_RNA MGP_AJ_T0010988.1 MGP_AJ_G0009110.1 mouse_genomes_project 8 82471935 82472044 - Gm24197 miRNA miRNA MGP_AJ_T0090670.1 MGP_AJ_G0034146.1 mouse_genomes_project 8 115160907 115180670 + MGP_AJ_P0090670 Cenpn protein_coding protein_coding MGP_AJ_T0088524.1 MGP_AJ_G0033457.1 mouse_genomes_project 8 22209592 22215002 + MGP_AJ_P0088524 Tm2d2 protein_coding protein_coding MGP_AJ_T0009075.1 MGP_AJ_G0007297.1 mouse_genomes_project 8 8393882 8396195 + E230013L22Rik lincRNA lincRNA MGP_AJ_T0090111.1 MGP_AJ_G0033945.1 mouse_genomes_project 8 92220054 92258668 + MGP_AJ_P0090111 Cpne2 protein_coding protein_coding MGP_AJ_T0090112.1 MGP_AJ_G0033945.1 mouse_genomes_project 8 92220103 92236953 + Cpne2 protein_coding retained_intron MGP_AJ_T0090113.1 MGP_AJ_G0033945.1 mouse_genomes_project 8 92220131 92237948 + Cpne2 protein_coding processed_transcript MGP_AJ_T0090114.1 MGP_AJ_G0033945.1 mouse_genomes_project 8 92220131 92258529 + MGP_AJ_P0090114 Cpne2 protein_coding protein_coding MGP_AJ_T0090115.1 MGP_AJ_G0033945.1 mouse_genomes_project 8 92250790 92258253 + Cpne2 protein_coding retained_intron MGP_AJ_T0089903.1 MGP_AJ_G0033877.1 mouse_genomes_project 8 82630380 82631751 + Wdr83os protein_coding retained_intron MGP_AJ_T0089904.1 MGP_AJ_G0033877.1 mouse_genomes_project 8 82630418 82631417 + MGP_AJ_P0089904 Wdr83os protein_coding protein_coding MGP_AJ_T0090830.1 MGP_AJ_G0034195.1 mouse_genomes_project 8 120052447 120114251 + Jph3 protein_coding processed_transcript MGP_AJ_T0090831.1 MGP_AJ_G0034195.1 mouse_genomes_project 8 120055075 120115455 + MGP_AJ_P0090831 Jph3 protein_coding protein_coding MGP_AJ_T0090832.1 MGP_AJ_G0034195.1 mouse_genomes_project 8 120055079 120118903 + MGP_AJ_P0090832 Jph3 protein_coding nonsense_mediated_decay MGP_AJ_T0090833.1 MGP_AJ_G0034195.1 mouse_genomes_project 8 120078110 120107217 + Jph3 protein_coding retained_intron MGP_AJ_T0015962.1 MGP_AJ_G0014057.1 mouse_genomes_project 8 9917292 9917496 - processed_pseudogene processed_pseudogene MGP_AJ_T0088111.1 MGP_AJ_G0033309.1 mouse_genomes_project 8 1173424 1182581 + MGP_AJ_P0088111 Map2k7 protein_coding protein_coding MGP_AJ_T0088112.1 MGP_AJ_G0033309.1 mouse_genomes_project 8 1173445 1182582 + MGP_AJ_P0088112 Map2k7 protein_coding protein_coding MGP_AJ_T0088113.1 MGP_AJ_G0033309.1 mouse_genomes_project 8 1173513 1182582 + MGP_AJ_P0088113 Map2k7 protein_coding protein_coding MGP_AJ_T0088114.1 MGP_AJ_G0033309.1 mouse_genomes_project 8 1173513 1182582 + MGP_AJ_P0088114 Map2k7 protein_coding protein_coding MGP_AJ_T0088115.1 MGP_AJ_G0033309.1 mouse_genomes_project 8 1173549 1186108 + MGP_AJ_P0088115 Map2k7 protein_coding nonsense_mediated_decay MGP_AJ_T0088116.1 MGP_AJ_G0033309.1 mouse_genomes_project 8 1174789 1182582 + MGP_AJ_P0088116 Map2k7 protein_coding protein_coding MGP_AJ_T0088117.1 MGP_AJ_G0033309.1 mouse_genomes_project 8 1174789 1182581 + MGP_AJ_P0088117 Map2k7 protein_coding protein_coding MGP_AJ_T0088118.1 MGP_AJ_G0033309.1 mouse_genomes_project 8 1177948 1180526 + MGP_AJ_P0088118 Map2k7 protein_coding protein_coding MGP_AJ_T0088119.1 MGP_AJ_G0033309.1 mouse_genomes_project 8 1179141 1180862 + Map2k7 protein_coding processed_transcript MGP_AJ_T0088120.1 MGP_AJ_G0033309.1 mouse_genomes_project 8 1179321 1180985 + Map2k7 protein_coding retained_intron MGP_AJ_T0016029.1 MGP_AJ_G0014124.1 mouse_genomes_project 8 96870188 96872892 - processed_pseudogene processed_pseudogene MGP_AJ_T0090252.1 MGP_AJ_G0033995.1 mouse_genomes_project 8 102522496 102527942 + MGP_AJ_P0090252 Pdp2 protein_coding protein_coding MGP_AJ_T0089272.1 MGP_AJ_G0033684.1 mouse_genomes_project 8 67709770 67725641 + MGP_AJ_P0089272 Gdf1 protein_coding protein_coding MGP_AJ_T0089273.1 MGP_AJ_G0033684.1 mouse_genomes_project 8 67709770 67725646 + MGP_AJ_P0089273 Gdf1 protein_coding protein_coding MGP_AJ_T0089274.1 MGP_AJ_G0033684.1 mouse_genomes_project 8 67712345 67716685 + Gdf1 protein_coding retained_intron MGP_AJ_T0088075.1 MGP_AJ_G0033296.1 mouse_genomes_project 8 572102 576432 + MGP_AJ_P0088075 Retn protein_coding protein_coding MGP_AJ_T0088076.1 MGP_AJ_G0033296.1 mouse_genomes_project 8 572102 574429 + MGP_AJ_P0088076 Retn protein_coding protein_coding MGP_AJ_T0002332.1 MGP_AJ_G0002243.1 mouse_genomes_project 8 81745514 81747694 + TEC TEC MGP_AJ_T0101486.1 MGP_AJ_G0039452.1 mouse_genomes_project 8 46331414 46331546 - Gm25830 snoRNA snoRNA MGP_AJ_T0089354.1 MGP_AJ_G0033712.1 mouse_genomes_project 8 68240240 68244806 - MGP_AJ_P0089354 Arrdc2 protein_coding protein_coding MGP_AJ_T0009108.1 MGP_AJ_G0007323.1 mouse_genomes_project 8 44646398 44800249 - lincRNA lincRNA MGP_AJ_T0088478.1 MGP_AJ_G0033442.1 mouse_genomes_project 8 20352376 20358079 + MGP_AJ_P0088478 Nkx6-3 protein_coding protein_coding MGP_AJ_T0091132.1 MGP_AJ_G0034279.1 mouse_genomes_project 8 126832752 126952163 + MGP_AJ_P0091132 Nrp1 protein_coding unknown_likely_coding MGP_AJ_T0091133.1 MGP_AJ_G0034279.1 mouse_genomes_project 8 126833220 126980378 + MGP_AJ_P0091133 Nrp1 protein_coding protein_coding MGP_AJ_T0009077.1 MGP_AJ_G0007299.1 mouse_genomes_project 8 9220968 9221370 + Gm29175 lincRNA lincRNA MGP_AJ_T0089706.1 MGP_AJ_G0033827.1 mouse_genomes_project 8 81513237 81536514 + MGP_AJ_P0089706 Prkaca protein_coding protein_coding MGP_AJ_T0100212.1 MGP_AJ_G0038178.1 mouse_genomes_project 8 56894433 56894541 + Gm24847 snRNA snRNA MGP_AJ_T0010999.1 MGP_AJ_G0009121.1 mouse_genomes_project 8 94333635 94333717 + Gm24132 miRNA miRNA MGP_AJ_T0090888.1 MGP_AJ_G0034208.1 mouse_genomes_project 8 120801156 120807882 + MGP_AJ_P0090888 Ctu2 protein_coding protein_coding MGP_AJ_T0090889.1 MGP_AJ_G0034208.1 mouse_genomes_project 8 120801222 120808928 + MGP_AJ_P0090889 Ctu2 protein_coding nonsense_mediated_decay MGP_AJ_T0090890.1 MGP_AJ_G0034208.1 mouse_genomes_project 8 120801226 120806531 + Ctu2 protein_coding retained_intron MGP_AJ_T0090891.1 MGP_AJ_G0034208.1 mouse_genomes_project 8 120801226 120803227 + MGP_AJ_P0090891 Ctu2 protein_coding protein_coding MGP_AJ_T0090892.1 MGP_AJ_G0034208.1 mouse_genomes_project 8 120801233 120804358 + MGP_AJ_P0090892 Ctu2 protein_coding protein_coding MGP_AJ_T0090893.1 MGP_AJ_G0034208.1 mouse_genomes_project 8 120801256 120803963 + Ctu2 protein_coding retained_intron MGP_AJ_T0090894.1 MGP_AJ_G0034208.1 mouse_genomes_project 8 120801706 120803259 + Ctu2 protein_coding retained_intron MGP_AJ_T0090895.1 MGP_AJ_G0034208.1 mouse_genomes_project 8 120805711 120806530 + Ctu2 protein_coding retained_intron MGP_AJ_T0090896.1 MGP_AJ_G0034208.1 mouse_genomes_project 8 120805746 120806534 + MGP_AJ_P0090896 Ctu2 protein_coding protein_coding MGP_AJ_T0090744.1 MGP_AJ_G0034176.1 mouse_genomes_project 8 118267558 118328227 + MGP_AJ_P0090744 Crispld2 protein_coding protein_coding MGP_AJ_T0090745.1 MGP_AJ_G0034176.1 mouse_genomes_project 8 118267628 118327013 + MGP_AJ_P0090745 Crispld2 protein_coding protein_coding MGP_AJ_T0090746.1 MGP_AJ_G0034176.1 mouse_genomes_project 8 118277870 118327013 + MGP_AJ_P0090746 Crispld2 protein_coding protein_coding MGP_AJ_T0090747.1 MGP_AJ_G0034176.1 mouse_genomes_project 8 118288316 118290798 + Crispld2 protein_coding processed_transcript MGP_AJ_T0090748.1 MGP_AJ_G0034176.1 mouse_genomes_project 8 118305900 118325908 + Crispld2 protein_coding retained_intron MGP_AJ_T0100208.1 MGP_AJ_G0038174.1 mouse_genomes_project 8 47911194 47911257 + Gm23986 snRNA snRNA MGP_AJ_T0088438.1 MGP_AJ_G0033434.1 mouse_genomes_project 8 19765060 19784160 - MGP_AJ_P0088438 protein_coding protein_coding MGP_AJ_T0088439.1 MGP_AJ_G0033434.1 mouse_genomes_project 8 19765070 19784129 - MGP_AJ_P0088439 protein_coding unknown_likely_coding MGP_AJ_T0002330.1 MGP_AJ_G0002241.1 mouse_genomes_project 8 41571935 41572763 - TEC TEC MGP_AJ_T0090219.1 MGP_AJ_G0033981.1 mouse_genomes_project 8 101993550 102034851 + MGP_AJ_P0090219 Cdh5 protein_coding protein_coding MGP_AJ_T0005401.1 MGP_AJ_G0004577.1 mouse_genomes_project 8 121029541 121031849 + Gm10612 antisense antisense MGP_AJ_T0088484.1 MGP_AJ_G0033447.1 mouse_genomes_project 8 20834529 21094871 + MGP_AJ_P0088484 Zmat4 protein_coding protein_coding MGP_AJ_T0088485.1 MGP_AJ_G0033447.1 mouse_genomes_project 8 20869933 21262472 + MGP_AJ_P0088485 Zmat4 protein_coding protein_coding MGP_AJ_T0088486.1 MGP_AJ_G0033447.1 mouse_genomes_project 8 20869933 21355887 + MGP_AJ_P0088486 Zmat4 protein_coding nonsense_mediated_decay MGP_AJ_T0088487.1 MGP_AJ_G0033447.1 mouse_genomes_project 8 20901928 21002317 + MGP_AJ_P0088487 Zmat4 protein_coding protein_coding MGP_AJ_T0088488.1 MGP_AJ_G0033447.1 mouse_genomes_project 8 21122111 21214922 + Zmat4 protein_coding retained_intron MGP_AJ_T0088570.1 MGP_AJ_G0033465.1 mouse_genomes_project 8 22928139 22958089 - MGP_AJ_P0088570 Ddhd2 protein_coding protein_coding MGP_AJ_T0090993.1 MGP_AJ_G0034234.1 mouse_genomes_project 8 121762768 121767086 + MGP_AJ_P0090993 Mc1r protein_coding protein_coding MGP_AJ_T0009134.1 MGP_AJ_G0007346.1 mouse_genomes_project 8 84439328 84456276 + Gm27167 lincRNA lincRNA MGP_AJ_T0009197.1 MGP_AJ_G0007387.1 mouse_genomes_project 8 119498190 119501310 - 5033426O07Rik lincRNA lincRNA MGP_AJ_T0088380.1 MGP_AJ_G0033392.1 mouse_genomes_project 8 16028054 16030961 - MGP_AJ_P0088380 Defb12 protein_coding protein_coding MGP_AJ_T0015992.1 MGP_AJ_G0014087.1 mouse_genomes_project 8 38162562 38164586 - processed_pseudogene processed_pseudogene MGP_AJ_T0089024.1 MGP_AJ_G0033616.1 mouse_genomes_project 8 58521101 58692196 + MGP_AJ_P0089024 Sh3rf1 protein_coding protein_coding MGP_AJ_T0090726.1 MGP_AJ_G0034170.1 mouse_genomes_project 8 117941474 117963166 + MGP_AJ_P0090726 Wfdc1 protein_coding protein_coding MGP_AJ_T0091138.1 MGP_AJ_G0034281.1 mouse_genomes_project 8 127216490 127261629 - MGP_AJ_P0091138 Gm3952 protein_coding protein_coding MGP_AJ_T0102926.1 MGP_AJ_G0040666.1 mouse_genomes_project 8 65965095 65965395 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0088433.1 MGP_AJ_G0033430.1 mouse_genomes_project 8 19566972 19590022 - MGP_AJ_P0088433 Slc25a15 protein_coding protein_coding MGP_AJ_T0090521.1 MGP_AJ_G0034102.1 mouse_genomes_project 8 108288482 108294032 + MGP_AJ_P0090521 Cmtr2 protein_coding protein_coding MGP_AJ_T0090522.1 MGP_AJ_G0034102.1 mouse_genomes_project 8 108290806 108297304 + MGP_AJ_P0090522 Cmtr2 protein_coding protein_coding MGP_AJ_T0010976.1 MGP_AJ_G0009098.1 mouse_genomes_project 8 81470957 81471071 - Gm44450 miRNA miRNA MGP_AJ_T0089402.1 MGP_AJ_G0033726.1 mouse_genomes_project 8 68868240 68876093 + MGP_AJ_P0089402 Babam1 protein_coding protein_coding MGP_AJ_T0098803.1 MGP_AJ_G0036787.1 mouse_genomes_project 8 66753000 66753296 + Gm25661 ribozyme ribozyme MGP_AJ_T0091009.1 MGP_AJ_G0034238.1 mouse_genomes_project 8 121881763 121892590 - MGP_AJ_P0091009 Dbndd1 protein_coding protein_coding MGP_AJ_T0091010.1 MGP_AJ_G0034238.1 mouse_genomes_project 8 121882732 121892525 - MGP_AJ_P0091010 Dbndd1 protein_coding protein_coding MGP_AJ_T0091011.1 MGP_AJ_G0034238.1 mouse_genomes_project 8 121882732 121892598 - MGP_AJ_P0091011 Dbndd1 protein_coding protein_coding MGP_AJ_T0088311.1 MGP_AJ_G0033371.1 mouse_genomes_project 8 10866969 10867767 + MGP_AJ_P0088311 protein_coding protein_coding MGP_AJ_T0089739.1 MGP_AJ_G0033844.1 mouse_genomes_project 8 81794871 81802228 - MGP_AJ_P0089739 Mri1 protein_coding protein_coding MGP_AJ_T0089740.1 MGP_AJ_G0033844.1 mouse_genomes_project 8 81795986 81801317 - MGP_AJ_P0089740 Mri1 protein_coding protein_coding MGP_AJ_T0089741.1 MGP_AJ_G0033844.1 mouse_genomes_project 8 81798820 81802151 - MGP_AJ_P0089741 Mri1 protein_coding nonsense_mediated_decay MGP_AJ_T0089742.1 MGP_AJ_G0033844.1 mouse_genomes_project 8 81799134 81802230 - Mri1 protein_coding processed_transcript MGP_AJ_T0089743.1 MGP_AJ_G0033844.1 mouse_genomes_project 8 81800693 81802230 - Mri1 protein_coding retained_intron MGP_AJ_T0101464.1 MGP_AJ_G0039430.1 mouse_genomes_project 8 12220303 12220436 - Gm24231 snoRNA snoRNA MGP_AJ_T0090514.1 MGP_AJ_G0034096.1 mouse_genomes_project 8 108049304 108058671 + MGP_AJ_P0090514 Tat protein_coding protein_coding MGP_AJ_T0090515.1 MGP_AJ_G0034096.1 mouse_genomes_project 8 108049373 108053562 + MGP_AJ_P0090515 Tat protein_coding protein_coding MGP_AJ_T0100231.1 MGP_AJ_G0038197.1 mouse_genomes_project 8 102414143 102414250 + Gm22148 snRNA snRNA MGP_AJ_T0101522.1 MGP_AJ_G0039488.1 mouse_genomes_project 8 116368075 116368205 + Gm25200 snoRNA snoRNA MGP_AJ_T0089659.1 MGP_AJ_G0033814.1 mouse_genomes_project 8 80911087 80952248 + MGP_AJ_P0089659 Clgn protein_coding protein_coding MGP_AJ_T0089660.1 MGP_AJ_G0033814.1 mouse_genomes_project 8 80911098 80950527 + MGP_AJ_P0089660 Clgn protein_coding protein_coding MGP_AJ_T0002344.1 MGP_AJ_G0002254.1 mouse_genomes_project 8 120265171 120265969 - TEC TEC MGP_AJ_T0090224.1 MGP_AJ_G0033983.1 mouse_genomes_project 8 102115635 102137582 - MGP_AJ_P0090224 Tk2 protein_coding protein_coding MGP_AJ_T0010948.1 MGP_AJ_G0009070.1 mouse_genomes_project 8 10141966 10142034 - Mir1968 miRNA miRNA MGP_AJ_T0088903.1 MGP_AJ_G0033577.1 mouse_genomes_project 8 44766348 44768567 + MGP_AJ_P0088903 protein_coding protein_coding MGP_AJ_T0090413.1 MGP_AJ_G0034058.1 mouse_genomes_project 8 104159083 104173598 + MGP_AJ_P0090413 Pla2g15 protein_coding protein_coding MGP_AJ_T0088110.1 MGP_AJ_G0033308.1 mouse_genomes_project 8 1161545 1172155 + MGP_AJ_P0088110 Lrrc8e protein_coding protein_coding MGP_AJ_T0009072.1 MGP_AJ_G0007295.1 mouse_genomes_project 8 7832878 7836909 - 3930402G23Rik lincRNA lincRNA MGP_AJ_T0015958.1 MGP_AJ_G0014053.1 mouse_genomes_project 8 1747646 1748042 - processed_pseudogene processed_pseudogene MGP_AJ_T0090884.1 MGP_AJ_G0034206.1 mouse_genomes_project 8 120779166 120785670 - MGP_AJ_P0090884 Snai3 protein_coding protein_coding MGP_AJ_T0090664.1 MGP_AJ_G0034145.1 mouse_genomes_project 8 115134918 115140758 - Cmc2 protein_coding retained_intron MGP_AJ_T0090665.1 MGP_AJ_G0034145.1 mouse_genomes_project 8 115134918 115160623 - MGP_AJ_P0090665 Cmc2 protein_coding protein_coding MGP_AJ_T0090666.1 MGP_AJ_G0034145.1 mouse_genomes_project 8 115135512 115160590 - MGP_AJ_P0090666 Cmc2 protein_coding nonsense_mediated_decay MGP_AJ_T0090667.1 MGP_AJ_G0034145.1 mouse_genomes_project 8 115135766 115160607 - MGP_AJ_P0090667 Cmc2 protein_coding protein_coding MGP_AJ_T0090668.1 MGP_AJ_G0034145.1 mouse_genomes_project 8 115135848 115160614 - Cmc2 protein_coding processed_transcript MGP_AJ_T0090669.1 MGP_AJ_G0034145.1 mouse_genomes_project 8 115135865 115160533 - MGP_AJ_P0090669 Cmc2 protein_coding protein_coding MGP_AJ_T0088301.1 MGP_AJ_G0033366.1 mouse_genomes_project 8 10711633 10737669 + MGP_AJ_P0088301 Cdc16 protein_coding protein_coding MGP_AJ_T0088302.1 MGP_AJ_G0033366.1 mouse_genomes_project 8 10711634 10716965 + Cdc16 protein_coding processed_transcript MGP_AJ_T0088303.1 MGP_AJ_G0033366.1 mouse_genomes_project 8 10711672 10720546 + Cdc16 protein_coding processed_transcript MGP_AJ_T0088304.1 MGP_AJ_G0033366.1 mouse_genomes_project 8 10712724 10716968 + Cdc16 protein_coding retained_intron MGP_AJ_T0088305.1 MGP_AJ_G0033366.1 mouse_genomes_project 8 10734732 10737669 + Cdc16 protein_coding retained_intron MGP_AJ_T0091023.1 MGP_AJ_G0034247.1 mouse_genomes_project 8 122381132 122407688 - MGP_AJ_P0091023 Taf5l protein_coding protein_coding MGP_AJ_T0091024.1 MGP_AJ_G0034247.1 mouse_genomes_project 8 122381132 122407404 - MGP_AJ_P0091024 Taf5l protein_coding protein_coding MGP_AJ_T0011730.1 MGP_AJ_G0009852.1 mouse_genomes_project 8 121901213 121901494 + Gm22314 misc_RNA misc_RNA MGP_AJ_T0089449.1 MGP_AJ_G0033741.1 mouse_genomes_project 8 69085653 69099522 + MGP_AJ_P0089449 Colgalt1 protein_coding protein_coding MGP_AJ_T0088266.1 MGP_AJ_G0033353.1 mouse_genomes_project 8 10111997 10128285 + MGP_AJ_P0088266 Lamp1 protein_coding protein_coding MGP_AJ_T0090638.1 MGP_AJ_G0034136.1 mouse_genomes_project 8 111805243 111817372 + MGP_AJ_P0090638 Syce1l protein_coding protein_coding MGP_AJ_T0090639.1 MGP_AJ_G0034136.1 mouse_genomes_project 8 111805243 111817372 + MGP_AJ_P0090639 Syce1l protein_coding protein_coding MGP_AJ_T0088641.1 MGP_AJ_G0033500.1 mouse_genomes_project 8 30468871 30620303 - MGP_AJ_P0088641 Wrn protein_coding protein_coding MGP_AJ_T0088642.1 MGP_AJ_G0033500.1 mouse_genomes_project 8 30468871 30620303 - MGP_AJ_P0088642 Wrn protein_coding protein_coding MGP_AJ_T0015971.1 MGP_AJ_G0014066.1 mouse_genomes_project 8 16524599 16527279 + processed_pseudogene processed_pseudogene MGP_AJ_T0089233.1 MGP_AJ_G0033679.1 mouse_genomes_project 8 67611508 67626881 - MGP_AJ_P0089233 Armc6 protein_coding protein_coding MGP_AJ_T0089234.1 MGP_AJ_G0033679.1 mouse_genomes_project 8 67611534 67614126 - Armc6 protein_coding retained_intron MGP_AJ_T0089235.1 MGP_AJ_G0033679.1 mouse_genomes_project 8 67611813 67613627 - Armc6 protein_coding retained_intron MGP_AJ_T0089236.1 MGP_AJ_G0033679.1 mouse_genomes_project 8 67614522 67616514 - Armc6 protein_coding retained_intron MGP_AJ_T0089237.1 MGP_AJ_G0033679.1 mouse_genomes_project 8 67615946 67626864 - Armc6 protein_coding retained_intron MGP_AJ_T0089238.1 MGP_AJ_G0033679.1 mouse_genomes_project 8 67616654 67626541 - MGP_AJ_P0089238 Armc6 protein_coding protein_coding MGP_AJ_T0090730.1 MGP_AJ_G0034173.1 mouse_genomes_project 8 118084501 118115829 - MGP_AJ_P0090730 Cotl1 protein_coding protein_coding MGP_AJ_T0090731.1 MGP_AJ_G0034173.1 mouse_genomes_project 8 118084501 118115886 - MGP_AJ_P0090731 Cotl1 protein_coding protein_coding MGP_AJ_T0011714.1 MGP_AJ_G0009836.1 mouse_genomes_project 8 22879444 22879766 + Gm23094 misc_RNA misc_RNA MGP_AJ_T0090198.1 MGP_AJ_G0033975.1 mouse_genomes_project 8 93394947 93395814 + Setd6 protein_coding processed_transcript MGP_AJ_T0090199.1 MGP_AJ_G0033975.1 mouse_genomes_project 8 93394964 93398065 + MGP_AJ_P0090199 Setd6 protein_coding protein_coding MGP_AJ_T0090200.1 MGP_AJ_G0033975.1 mouse_genomes_project 8 93395194 93396270 + Setd6 protein_coding processed_transcript MGP_AJ_T0090201.1 MGP_AJ_G0033975.1 mouse_genomes_project 8 93395643 93397574 + Setd6 protein_coding processed_transcript MGP_AJ_T0090202.1 MGP_AJ_G0033975.1 mouse_genomes_project 8 93395652 93397121 + Setd6 protein_coding processed_transcript MGP_AJ_T0090203.1 MGP_AJ_G0033975.1 mouse_genomes_project 8 93396041 93397926 + Setd6 protein_coding processed_transcript MGP_AJ_T0090361.1 MGP_AJ_G0034037.1 mouse_genomes_project 8 103690028 103694385 - MGP_AJ_P0090361 Enkd1 protein_coding protein_coding MGP_AJ_T0088079.1 MGP_AJ_G0033299.1 mouse_genomes_project 8 598035 610605 - MGP_AJ_P0088079 Fcer2a protein_coding protein_coding MGP_AJ_T0090882.1 MGP_AJ_G0034204.1 mouse_genomes_project 8 120748420 120756685 - MGP_AJ_P0090882 Cyba protein_coding protein_coding MGP_AJ_T0088692.1 MGP_AJ_G0033516.1 mouse_genomes_project 8 32048264 32183300 - MGP_AJ_P0088692 Tnks protein_coding protein_coding MGP_AJ_T0009204.1 MGP_AJ_G0007393.1 mouse_genomes_project 8 120166265 120176608 + Gm26812 lincRNA lincRNA MGP_AJ_T0009205.1 MGP_AJ_G0007393.1 mouse_genomes_project 8 120167960 120176327 + Gm26812 lincRNA lincRNA MGP_AJ_T0005354.1 MGP_AJ_G0004537.1 mouse_genomes_project 8 51952330 51985670 - 5330439A09Rik antisense antisense MGP_AJ_T0090396.1 MGP_AJ_G0034055.1 mouse_genomes_project 8 104011047 104013309 - MGP_AJ_P0090396 Ddx28 protein_coding protein_coding MGP_AJ_T0018480.1 MGP_AJ_G0015697.1 mouse_genomes_project 8 82391015 82392233 + 1700122E12Rik processed_transcript processed_transcript MGP_AJ_T0018481.1 MGP_AJ_G0015697.1 mouse_genomes_project 8 82391265 82392034 + 1700122E12Rik processed_transcript processed_transcript MGP_AJ_T0090342.1 MGP_AJ_G0034029.1 mouse_genomes_project 8 103499115 103504374 + MGP_AJ_P0090342 Hsd11b2 protein_coding protein_coding MGP_AJ_T0101516.1 MGP_AJ_G0039482.1 mouse_genomes_project 8 107897058 107897143 + Snord71 snoRNA snoRNA MGP_AJ_T0010980.1 MGP_AJ_G0009102.1 mouse_genomes_project 8 81630493 81630581 + Mir709 miRNA miRNA MGP_AJ_T0009152.1 MGP_AJ_G0007357.1 mouse_genomes_project 8 85033778 85034960 - 1700120C18Rik lincRNA lincRNA MGP_AJ_T0089173.1 MGP_AJ_G0033661.1 mouse_genomes_project 8 67200422 67209120 + MGP_AJ_P0089173 Lpar2 protein_coding protein_coding MGP_AJ_T0089174.1 MGP_AJ_G0033661.1 mouse_genomes_project 8 67200558 67209121 + MGP_AJ_P0089174 Lpar2 protein_coding protein_coding MGP_AJ_T0090511.1 MGP_AJ_G0034095.1 mouse_genomes_project 8 108006675 108020894 - MGP_AJ_P0090511 Marveld3 protein_coding protein_coding MGP_AJ_T0090512.1 MGP_AJ_G0034095.1 mouse_genomes_project 8 108011662 108020929 - MGP_AJ_P0090512 Marveld3 protein_coding protein_coding MGP_AJ_T0090513.1 MGP_AJ_G0034095.1 mouse_genomes_project 8 108018356 108020779 - Marveld3 protein_coding retained_intron MGP_AJ_T0089699.1 MGP_AJ_G0033825.1 mouse_genomes_project 8 81473844 81495509 - MGP_AJ_P0089699 Gm10644 protein_coding protein_coding MGP_AJ_T0015986.1 MGP_AJ_G0014081.1 mouse_genomes_project 8 31543689 31544853 - processed_pseudogene processed_pseudogene MGP_AJ_T0090187.1 MGP_AJ_G0033972.1 mouse_genomes_project 8 93240983 93257012 - MGP_AJ_P0090187 Prss54 protein_coding protein_coding MGP_AJ_T0090188.1 MGP_AJ_G0033972.1 mouse_genomes_project 8 93241142 93256754 - MGP_AJ_P0090188 Prss54 protein_coding protein_coding MGP_AJ_T0089465.1 MGP_AJ_G0033744.1 mouse_genomes_project 8 69165557 69166919 + MGP_AJ_P0089465 Insl3 protein_coding protein_coding MGP_AJ_T0089513.1 MGP_AJ_G0033759.1 mouse_genomes_project 8 69769847 69773881 + MGP_AJ_P0089513 Fam32a protein_coding protein_coding MGP_AJ_T0010987.1 MGP_AJ_G0009109.1 mouse_genomes_project 8 82413248 82413310 + Mir7069 miRNA miRNA MGP_AJ_T0016022.1 MGP_AJ_G0014117.1 mouse_genomes_project 8 83396516 83397579 - processed_pseudogene processed_pseudogene MGP_AJ_T0089936.1 MGP_AJ_G0033890.1 mouse_genomes_project 8 84020096 84117311 - MGP_AJ_P0089936 Abcc12 protein_coding nonsense_mediated_decay MGP_AJ_T0089937.1 MGP_AJ_G0033890.1 mouse_genomes_project 8 84042419 84117342 - MGP_AJ_P0089937 Abcc12 protein_coding protein_coding MGP_AJ_T0089938.1 MGP_AJ_G0033890.1 mouse_genomes_project 8 84042423 84072938 - MGP_AJ_P0089938 Abcc12 protein_coding nonsense_mediated_decay MGP_AJ_T0089939.1 MGP_AJ_G0033890.1 mouse_genomes_project 8 84042681 84109369 - MGP_AJ_P0089939 Abcc12 protein_coding protein_coding MGP_AJ_T0089940.1 MGP_AJ_G0033890.1 mouse_genomes_project 8 84042681 84109369 - MGP_AJ_P0089940 Abcc12 protein_coding nonsense_mediated_decay MGP_AJ_T0089941.1 MGP_AJ_G0033890.1 mouse_genomes_project 8 84042681 84109369 - MGP_AJ_P0089941 Abcc12 protein_coding nonsense_mediated_decay MGP_AJ_T0089942.1 MGP_AJ_G0033890.1 mouse_genomes_project 8 84072151 84117342 - MGP_AJ_P0089942 Abcc12 protein_coding protein_coding MGP_AJ_T0090537.1 MGP_AJ_G0034107.1 mouse_genomes_project 8 108903692 108940197 - MGP_AJ_P0090537 Sf3b3 protein_coding protein_coding MGP_AJ_T0009187.1 MGP_AJ_G0007379.1 mouse_genomes_project 8 118379087 118381410 + A130014A01Rik lincRNA lincRNA MGP_AJ_T0018451.1 MGP_AJ_G0015687.1 mouse_genomes_project 8 22748190 22756176 - Gm16159 processed_transcript processed_transcript MGP_AJ_T0018452.1 MGP_AJ_G0015687.1 mouse_genomes_project 8 22752770 22753653 - Gm16159 processed_transcript processed_transcript MGP_AJ_T0088788.1 MGP_AJ_G0033548.1 mouse_genomes_project 8 40503047 40514788 + MGP_AJ_P0088788 Triml2 protein_coding protein_coding MGP_AJ_T0089128.1 MGP_AJ_G0033646.1 mouse_genomes_project 8 66386626 66441371 - MGP_AJ_P0089128 Slc18a1 protein_coding protein_coding MGP_AJ_T0089129.1 MGP_AJ_G0033646.1 mouse_genomes_project 8 66417459 66429377 - Slc18a1 protein_coding retained_intron MGP_AJ_T0089130.1 MGP_AJ_G0033646.1 mouse_genomes_project 8 66422516 66427657 - Slc18a1 protein_coding retained_intron MGP_AJ_T0089131.1 MGP_AJ_G0033646.1 mouse_genomes_project 8 66427249 66441384 - Slc18a1 protein_coding processed_transcript MGP_AJ_T0089132.1 MGP_AJ_G0033646.1 mouse_genomes_project 8 66427317 66441358 - Slc18a1 protein_coding processed_transcript MGP_AJ_T0089916.1 MGP_AJ_G0033884.1 mouse_genomes_project 8 82929563 82954346 - MGP_AJ_P0089916 4921524J17Rik protein_coding protein_coding MGP_AJ_T0089917.1 MGP_AJ_G0033884.1 mouse_genomes_project 8 82929657 82954229 - MGP_AJ_P0089917 4921524J17Rik protein_coding unknown_likely_coding MGP_AJ_T0010969.1 MGP_AJ_G0009091.1 mouse_genomes_project 8 68203450 68203508 + Mir7240 miRNA miRNA MGP_AJ_T0091134.1 MGP_AJ_G0034280.1 mouse_genomes_project 8 127155050 127203735 + MGP_AJ_P0091134 Itgb1 protein_coding protein_coding MGP_AJ_T0091135.1 MGP_AJ_G0034280.1 mouse_genomes_project 8 127155153 127203152 + MGP_AJ_P0091135 Itgb1 protein_coding nonsense_mediated_decay MGP_AJ_T0091136.1 MGP_AJ_G0034280.1 mouse_genomes_project 8 127155266 127180811 + Itgb1 protein_coding retained_intron MGP_AJ_T0091137.1 MGP_AJ_G0034280.1 mouse_genomes_project 8 127194867 127202924 + MGP_AJ_P0091137 Itgb1 protein_coding protein_coding MGP_AJ_T0018473.1 MGP_AJ_G0015694.1 mouse_genomes_project 8 69697765 69712035 - Gm16091 processed_transcript processed_transcript MGP_AJ_T0089760.1 MGP_AJ_G0033847.1 mouse_genomes_project 8 82202641 82204161 - MGP_AJ_P0089760 Ier2 protein_coding protein_coding MGP_AJ_T0089275.1 MGP_AJ_G0033685.1 mouse_genomes_project 8 67725575 67747500 - MGP_AJ_P0089275 Upf1 protein_coding protein_coding MGP_AJ_T0089276.1 MGP_AJ_G0033685.1 mouse_genomes_project 8 67725621 67747220 - MGP_AJ_P0089276 Upf1 protein_coding unknown_likely_coding MGP_AJ_T0089875.1 MGP_AJ_G0033873.1 mouse_genomes_project 8 82607465 82615552 + MGP_AJ_P0089875 Fbxw9 protein_coding protein_coding MGP_AJ_T0089876.1 MGP_AJ_G0033873.1 mouse_genomes_project 8 82607466 82615554 + Fbxw9 protein_coding retained_intron MGP_AJ_T0089877.1 MGP_AJ_G0033873.1 mouse_genomes_project 8 82607507 82613237 + Fbxw9 protein_coding retained_intron MGP_AJ_T0089878.1 MGP_AJ_G0033873.1 mouse_genomes_project 8 82607939 82615547 + Fbxw9 protein_coding retained_intron MGP_AJ_T0089879.1 MGP_AJ_G0033873.1 mouse_genomes_project 8 82607977 82615317 + Fbxw9 protein_coding processed_transcript MGP_AJ_T0089880.1 MGP_AJ_G0033873.1 mouse_genomes_project 8 82613019 82614761 + Fbxw9 protein_coding retained_intron MGP_AJ_T0089881.1 MGP_AJ_G0033873.1 mouse_genomes_project 8 82614003 82614798 + Fbxw9 protein_coding processed_transcript MGP_AJ_T0089882.1 MGP_AJ_G0033873.1 mouse_genomes_project 8 82614057 82614800 + Fbxw9 protein_coding retained_intron MGP_AJ_T0089883.1 MGP_AJ_G0033873.1 mouse_genomes_project 8 82614498 82615334 + Fbxw9 protein_coding retained_intron MGP_AJ_T0098736.1 MGP_AJ_G0036720.1 mouse_genomes_project 8 12417430 12417523 + Gm24222 rRNA rRNA MGP_AJ_T0088461.1 MGP_AJ_G0033441.1 mouse_genomes_project 8 20172828 20349104 + MGP_AJ_P0088461 Ank1 protein_coding protein_coding MGP_AJ_T0088462.1 MGP_AJ_G0033441.1 mouse_genomes_project 8 20172866 20349665 + MGP_AJ_P0088462 Ank1 protein_coding protein_coding MGP_AJ_T0088463.1 MGP_AJ_G0033441.1 mouse_genomes_project 8 20173120 20347478 + MGP_AJ_P0088463 Ank1 protein_coding protein_coding MGP_AJ_T0088464.1 MGP_AJ_G0033441.1 mouse_genomes_project 8 20232758 20347961 + MGP_AJ_P0088464 Ank1 protein_coding protein_coding MGP_AJ_T0088465.1 MGP_AJ_G0033441.1 mouse_genomes_project 8 20232787 20348452 + MGP_AJ_P0088465 Ank1 protein_coding protein_coding MGP_AJ_T0088466.1 MGP_AJ_G0033441.1 mouse_genomes_project 8 20232890 20348452 + MGP_AJ_P0088466 Ank1 protein_coding protein_coding MGP_AJ_T0088467.1 MGP_AJ_G0033441.1 mouse_genomes_project 8 20255823 20349668 + MGP_AJ_P0088467 Ank1 protein_coding nonsense_mediated_decay MGP_AJ_T0088468.1 MGP_AJ_G0033441.1 mouse_genomes_project 8 20255839 20349668 + MGP_AJ_P0088468 Ank1 protein_coding protein_coding MGP_AJ_T0088469.1 MGP_AJ_G0033441.1 mouse_genomes_project 8 20255875 20349668 + MGP_AJ_P0088469 Ank1 protein_coding protein_coding MGP_AJ_T0088470.1 MGP_AJ_G0033441.1 mouse_genomes_project 8 20256089 20348859 + MGP_AJ_P0088470 Ank1 protein_coding nonsense_mediated_decay MGP_AJ_T0088471.1 MGP_AJ_G0033441.1 mouse_genomes_project 8 20256089 20348859 + MGP_AJ_P0088471 Ank1 protein_coding protein_coding MGP_AJ_T0088472.1 MGP_AJ_G0033441.1 mouse_genomes_project 8 20292815 20322850 + MGP_AJ_P0088472 Ank1 protein_coding protein_coding MGP_AJ_T0088473.1 MGP_AJ_G0033441.1 mouse_genomes_project 8 20320148 20326256 + Ank1 protein_coding retained_intron MGP_AJ_T0088474.1 MGP_AJ_G0033441.1 mouse_genomes_project 8 20338239 20348450 + MGP_AJ_P0088474 Ank1 protein_coding protein_coding MGP_AJ_T0088475.1 MGP_AJ_G0033441.1 mouse_genomes_project 8 20338314 20347865 + MGP_AJ_P0088475 Ank1 protein_coding protein_coding MGP_AJ_T0088476.1 MGP_AJ_G0033441.1 mouse_genomes_project 8 20338486 20347476 + MGP_AJ_P0088476 Ank1 protein_coding protein_coding MGP_AJ_T0088477.1 MGP_AJ_G0033441.1 mouse_genomes_project 8 20339302 20347540 + Ank1 protein_coding retained_intron MGP_AJ_T0089541.1 MGP_AJ_G0033771.1 mouse_genomes_project 8 70239738 70256448 + MGP_AJ_P0089541 Sin3b protein_coding protein_coding MGP_AJ_T0089542.1 MGP_AJ_G0033771.1 mouse_genomes_project 8 70239738 70275618 + MGP_AJ_P0089542 Sin3b protein_coding protein_coding MGP_AJ_T0101484.1 MGP_AJ_G0039450.1 mouse_genomes_project 8 42920566 42920687 - Gm23604 snoRNA snoRNA MGP_AJ_T0090384.1 MGP_AJ_G0034051.1 mouse_genomes_project 8 103941667 103965241 - MGP_AJ_P0090384 Slc12a4 protein_coding protein_coding MGP_AJ_T0090385.1 MGP_AJ_G0034051.1 mouse_genomes_project 8 103941667 103965312 - MGP_AJ_P0090385 Slc12a4 protein_coding protein_coding MGP_AJ_T0090386.1 MGP_AJ_G0034051.1 mouse_genomes_project 8 103945276 103946759 - Slc12a4 protein_coding retained_intron MGP_AJ_T0090387.1 MGP_AJ_G0034051.1 mouse_genomes_project 8 103952599 103963617 - MGP_AJ_P0090387 Slc12a4 protein_coding protein_coding MGP_AJ_T0090388.1 MGP_AJ_G0034051.1 mouse_genomes_project 8 103959438 103965271 - Slc12a4 protein_coding retained_intron MGP_AJ_T0005381.1 MGP_AJ_G0004559.1 mouse_genomes_project 8 103932367 103943921 + Gm16156 antisense antisense MGP_AJ_T0010989.1 MGP_AJ_G0009111.1 mouse_genomes_project 8 82609496 82609583 + Mir7070 miRNA miRNA MGP_AJ_T0009177.1 MGP_AJ_G0007372.1 mouse_genomes_project 8 103608557 103622510 - Gm5914 lincRNA lincRNA MGP_AJ_T0009178.1 MGP_AJ_G0007372.1 mouse_genomes_project 8 103608571 103622645 - Gm5914 lincRNA lincRNA MGP_AJ_T0090636.1 MGP_AJ_G0034135.1 mouse_genomes_project 8 111797616 111807209 + MGP_AJ_P0090636 Mon1b protein_coding protein_coding MGP_AJ_T0090637.1 MGP_AJ_G0034135.1 mouse_genomes_project 8 111797829 111807209 + MGP_AJ_P0090637 Mon1b protein_coding protein_coding MGP_AJ_T0018449.1 MGP_AJ_G0015685.1 mouse_genomes_project 8 15561754 15587009 - Gm16725 processed_transcript processed_transcript MGP_AJ_T0089995.1 MGP_AJ_G0033906.1 mouse_genomes_project 8 86264785 86319807 + MGP_AJ_P0089995 Cyld protein_coding protein_coding MGP_AJ_T0089996.1 MGP_AJ_G0033906.1 mouse_genomes_project 8 86272979 86319807 + MGP_AJ_P0089996 Cyld protein_coding protein_coding MGP_AJ_T0089997.1 MGP_AJ_G0033906.1 mouse_genomes_project 8 86272979 86319807 + MGP_AJ_P0089997 Cyld protein_coding protein_coding MGP_AJ_T0015976.1 MGP_AJ_G0014071.1 mouse_genomes_project 8 18892274 18898143 + processed_pseudogene processed_pseudogene MGP_AJ_T0090343.1 MGP_AJ_G0034030.1 mouse_genomes_project 8 103504854 103548049 - MGP_AJ_P0090343 Atp6v0d1 protein_coding protein_coding MGP_AJ_T0090344.1 MGP_AJ_G0034030.1 mouse_genomes_project 8 103511102 103520265 - Atp6v0d1 protein_coding retained_intron MGP_AJ_T0011004.1 MGP_AJ_G0009126.1 mouse_genomes_project 8 103599687 103599795 + Mir1966 miRNA miRNA MGP_AJ_T0089630.1 MGP_AJ_G0033804.1 mouse_genomes_project 8 78482158 78515473 - MGP_AJ_P0089630 Usp38 protein_coding protein_coding MGP_AJ_T0088172.1 MGP_AJ_G0033331.1 mouse_genomes_project 8 8109422 8224435 - MGP_AJ_P0088172 Col4a1 protein_coding protein_coding MGP_AJ_T0088173.1 MGP_AJ_G0033331.1 mouse_genomes_project 8 8123398 8127799 - Col4a1 protein_coding processed_transcript MGP_AJ_T0101508.1 MGP_AJ_G0039474.1 mouse_genomes_project 8 87253607 87253739 - Gm24212 snoRNA snoRNA MGP_AJ_T0090064.1 MGP_AJ_G0033930.1 mouse_genomes_project 8 91018687 91030573 - MGP_AJ_P0090064 Ces1h protein_coding protein_coding MGP_AJ_T0015987.1 MGP_AJ_G0014082.1 mouse_genomes_project 8 32365316 32365849 - processed_pseudogene processed_pseudogene MGP_AJ_T0101515.1 MGP_AJ_G0039481.1 mouse_genomes_project 8 103989552 103989683 - Gm22972 snoRNA snoRNA MGP_AJ_T0015981.1 MGP_AJ_G0014076.1 mouse_genomes_project 8 19422783 19423074 - processed_pseudogene processed_pseudogene MGP_AJ_T0018486.1 MGP_AJ_G0015700.1 mouse_genomes_project 8 93485674 93500216 + 4930513N10Rik processed_transcript processed_transcript MGP_AJ_T0018487.1 MGP_AJ_G0015700.1 mouse_genomes_project 8 93485817 93489045 + 4930513N10Rik processed_transcript processed_transcript MGP_AJ_T0018488.1 MGP_AJ_G0015700.1 mouse_genomes_project 8 93487877 93500185 + 4930513N10Rik processed_transcript processed_transcript MGP_AJ_T0102923.1 MGP_AJ_G0040663.1 mouse_genomes_project 8 18004503 18005501 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0091072.1 MGP_AJ_G0034265.1 mouse_genomes_project 8 123432452 123640907 + MGP_AJ_P0091072 Disc1 protein_coding protein_coding MGP_AJ_T0091073.1 MGP_AJ_G0034265.1 mouse_genomes_project 8 123432452 123641608 + MGP_AJ_P0091073 Disc1 protein_coding protein_coding MGP_AJ_T0091074.1 MGP_AJ_G0034265.1 mouse_genomes_project 8 123432452 123640907 + MGP_AJ_P0091074 Disc1 protein_coding protein_coding MGP_AJ_T0091075.1 MGP_AJ_G0034265.1 mouse_genomes_project 8 123432452 123641608 + MGP_AJ_P0091075 Disc1 protein_coding protein_coding MGP_AJ_T0091076.1 MGP_AJ_G0034265.1 mouse_genomes_project 8 123432452 123640907 + MGP_AJ_P0091076 Disc1 protein_coding protein_coding MGP_AJ_T0091077.1 MGP_AJ_G0034265.1 mouse_genomes_project 8 123432452 123640907 + MGP_AJ_P0091077 Disc1 protein_coding protein_coding MGP_AJ_T0091078.1 MGP_AJ_G0034265.1 mouse_genomes_project 8 123432466 123469542 + MGP_AJ_P0091078 Disc1 protein_coding protein_coding MGP_AJ_T0091079.1 MGP_AJ_G0034265.1 mouse_genomes_project 8 123432487 123640904 + MGP_AJ_P0091079 Disc1 protein_coding protein_coding MGP_AJ_T0091080.1 MGP_AJ_G0034265.1 mouse_genomes_project 8 123466522 123482090 + Disc1 protein_coding processed_transcript MGP_AJ_T0015983.1 MGP_AJ_G0014078.1 mouse_genomes_project 8 25447496 25448484 + processed_pseudogene processed_pseudogene MGP_AJ_T0088426.1 MGP_AJ_G0033427.1 mouse_genomes_project 8 19384676 19412381 + MGP_AJ_P0088426 Vps36 protein_coding protein_coding MGP_AJ_T0088427.1 MGP_AJ_G0033427.1 mouse_genomes_project 8 19384709 19397598 + Vps36 protein_coding processed_transcript MGP_AJ_T0088428.1 MGP_AJ_G0033427.1 mouse_genomes_project 8 19408530 19410170 + Vps36 protein_coding retained_intron MGP_AJ_T0016020.1 MGP_AJ_G0014115.1 mouse_genomes_project 8 82398801 82399185 - processed_pseudogene processed_pseudogene MGP_AJ_T0091101.1 MGP_AJ_G0034274.1 mouse_genomes_project 8 124838819 124888578 - MGP_AJ_P0091101 Tarbp1 protein_coding protein_coding MGP_AJ_T0088571.1 MGP_AJ_G0033466.1 mouse_genomes_project 8 22958317 22974526 + MGP_AJ_P0088571 protein_coding protein_coding MGP_AJ_T0010994.1 MGP_AJ_G0009116.1 mouse_genomes_project 8 86602535 86602631 + Mir8110 miRNA miRNA MGP_AJ_T0009104.1 MGP_AJ_G0007319.1 mouse_genomes_project 8 38171016 38174229 - Gm26584 lincRNA lincRNA MGP_AJ_T0005372.1 MGP_AJ_G0004552.1 mouse_genomes_project 8 82865335 82865759 + antisense antisense MGP_AJ_T0088810.1 MGP_AJ_G0033559.1 mouse_genomes_project 8 42846409 43167538 + MGP_AJ_P0088810 Sorbs2 protein_coding protein_coding MGP_AJ_T0088811.1 MGP_AJ_G0033559.1 mouse_genomes_project 8 42846415 43118025 + Sorbs2 protein_coding retained_intron MGP_AJ_T0088812.1 MGP_AJ_G0033559.1 mouse_genomes_project 8 42846419 43135046 + MGP_AJ_P0088812 Sorbs2 protein_coding protein_coding MGP_AJ_T0088813.1 MGP_AJ_G0033559.1 mouse_genomes_project 8 42846439 43116556 + MGP_AJ_P0088813 Sorbs2 protein_coding protein_coding MGP_AJ_T0088814.1 MGP_AJ_G0033559.1 mouse_genomes_project 8 42966380 43084711 + MGP_AJ_P0088814 Sorbs2 protein_coding protein_coding MGP_AJ_T0088815.1 MGP_AJ_G0033559.1 mouse_genomes_project 8 42966607 43084733 + MGP_AJ_P0088815 Sorbs2 protein_coding protein_coding MGP_AJ_T0088816.1 MGP_AJ_G0033559.1 mouse_genomes_project 8 42966820 42988302 + Sorbs2 protein_coding processed_transcript MGP_AJ_T0088817.1 MGP_AJ_G0033559.1 mouse_genomes_project 8 42966836 43085536 + MGP_AJ_P0088817 Sorbs2 protein_coding protein_coding MGP_AJ_T0088818.1 MGP_AJ_G0033559.1 mouse_genomes_project 8 42997253 43160775 + MGP_AJ_P0088818 Sorbs2 protein_coding protein_coding MGP_AJ_T0088819.1 MGP_AJ_G0033559.1 mouse_genomes_project 8 42997631 43116556 + MGP_AJ_P0088819 Sorbs2 protein_coding protein_coding MGP_AJ_T0088820.1 MGP_AJ_G0033559.1 mouse_genomes_project 8 42997637 43167535 + MGP_AJ_P0088820 Sorbs2 protein_coding protein_coding MGP_AJ_T0088821.1 MGP_AJ_G0033559.1 mouse_genomes_project 8 42997657 43084570 + Sorbs2 protein_coding retained_intron MGP_AJ_T0088822.1 MGP_AJ_G0033559.1 mouse_genomes_project 8 42997670 43085493 + MGP_AJ_P0088822 Sorbs2 protein_coding protein_coding MGP_AJ_T0088823.1 MGP_AJ_G0033559.1 mouse_genomes_project 8 42997745 43081323 + Sorbs2 protein_coding retained_intron MGP_AJ_T0088824.1 MGP_AJ_G0033559.1 mouse_genomes_project 8 42997765 43112340 + MGP_AJ_P0088824 Sorbs2 protein_coding protein_coding MGP_AJ_T0088825.1 MGP_AJ_G0033559.1 mouse_genomes_project 8 43000955 43097852 + MGP_AJ_P0088825 Sorbs2 protein_coding protein_coding MGP_AJ_T0088826.1 MGP_AJ_G0033559.1 mouse_genomes_project 8 43027774 43097901 + MGP_AJ_P0088826 Sorbs2 protein_coding protein_coding MGP_AJ_T0088827.1 MGP_AJ_G0033559.1 mouse_genomes_project 8 43027778 43097861 + MGP_AJ_P0088827 Sorbs2 protein_coding protein_coding MGP_AJ_T0088828.1 MGP_AJ_G0033559.1 mouse_genomes_project 8 43071875 43167544 + MGP_AJ_P0088828 Sorbs2 protein_coding protein_coding MGP_AJ_T0088829.1 MGP_AJ_G0033559.1 mouse_genomes_project 8 43101867 43167536 + MGP_AJ_P0088829 Sorbs2 protein_coding protein_coding MGP_AJ_T0088830.1 MGP_AJ_G0033559.1 mouse_genomes_project 8 43102589 43139375 + Sorbs2 protein_coding processed_transcript MGP_AJ_T0088831.1 MGP_AJ_G0033559.1 mouse_genomes_project 8 43109525 43132521 + MGP_AJ_P0088831 Sorbs2 protein_coding protein_coding MGP_AJ_T0088832.1 MGP_AJ_G0033559.1 mouse_genomes_project 8 43110241 43132489 + MGP_AJ_P0088832 Sorbs2 protein_coding protein_coding MGP_AJ_T0088833.1 MGP_AJ_G0033559.1 mouse_genomes_project 8 43112040 43115579 + Sorbs2 protein_coding retained_intron MGP_AJ_T0088834.1 MGP_AJ_G0033559.1 mouse_genomes_project 8 43115354 43134720 + MGP_AJ_P0088834 Sorbs2 protein_coding protein_coding MGP_AJ_T0088835.1 MGP_AJ_G0033559.1 mouse_genomes_project 8 43142841 43143553 + Sorbs2 protein_coding retained_intron MGP_AJ_T0088836.1 MGP_AJ_G0033559.1 mouse_genomes_project 8 43145437 43147001 + Sorbs2 protein_coding processed_transcript MGP_AJ_T0089065.1 MGP_AJ_G0033626.1 mouse_genomes_project 8 62028922 62141828 - MGP_AJ_P0089065 Klhl2 protein_coding protein_coding MGP_AJ_T0016005.1 MGP_AJ_G0014100.1 mouse_genomes_project 8 69965405 69965808 - processed_pseudogene processed_pseudogene MGP_AJ_T0101521.1 MGP_AJ_G0039487.1 mouse_genomes_project 8 111688329 111688460 - Gm25766 snoRNA snoRNA MGP_AJ_T0088982.1 MGP_AJ_G0033607.1 mouse_genomes_project 8 54840744 54968924 - MGP_AJ_P0088982 Galnt7 protein_coding protein_coding MGP_AJ_T0088983.1 MGP_AJ_G0033607.1 mouse_genomes_project 8 54841616 54968896 - MGP_AJ_P0088983 Galnt7 protein_coding protein_coding MGP_AJ_T0088984.1 MGP_AJ_G0033607.1 mouse_genomes_project 8 54842940 54855530 - Galnt7 protein_coding processed_transcript MGP_AJ_T0088985.1 MGP_AJ_G0033607.1 mouse_genomes_project 8 54859071 54968925 - Galnt7 protein_coding retained_intron MGP_AJ_T0089581.1 MGP_AJ_G0033785.1 mouse_genomes_project 8 75115234 75179236 - MGP_AJ_P0089581 Ednra protein_coding protein_coding MGP_AJ_T0089582.1 MGP_AJ_G0033785.1 mouse_genomes_project 8 75121913 75179264 - Ednra protein_coding retained_intron MGP_AJ_T0100241.1 MGP_AJ_G0038207.1 mouse_genomes_project 8 120153669 120153776 + Gm24283 snRNA snRNA MGP_AJ_T0005406.1 MGP_AJ_G0004582.1 mouse_genomes_project 8 124310348 124321311 + A730098A19Rik antisense antisense MGP_AJ_T0005384.1 MGP_AJ_G0004562.1 mouse_genomes_project 8 107917561 107927208 - Gm17344 antisense antisense MGP_AJ_T0005385.1 MGP_AJ_G0004562.1 mouse_genomes_project 8 107919302 107927231 - Gm17344 antisense antisense MGP_AJ_T0091069.1 MGP_AJ_G0034262.1 mouse_genomes_project 8 123276533 123282399 + MGP_AJ_P0091069 Sprtn protein_coding protein_coding MGP_AJ_T0015995.1 MGP_AJ_G0014090.1 mouse_genomes_project 8 43289379 43289685 + processed_pseudogene processed_pseudogene MGP_AJ_T0090552.1 MGP_AJ_G0034110.1 mouse_genomes_project 8 109024221 109079606 + MGP_AJ_P0090552 St3gal2 protein_coding protein_coding MGP_AJ_T0090553.1 MGP_AJ_G0034110.1 mouse_genomes_project 8 109024221 109076949 + MGP_AJ_P0090553 St3gal2 protein_coding protein_coding MGP_AJ_T0090554.1 MGP_AJ_G0034110.1 mouse_genomes_project 8 109024257 109063673 + St3gal2 protein_coding processed_transcript MGP_AJ_T0090555.1 MGP_AJ_G0034110.1 mouse_genomes_project 8 109036916 109063872 + St3gal2 protein_coding processed_transcript MGP_AJ_T0090556.1 MGP_AJ_G0034110.1 mouse_genomes_project 8 109046158 109063698 + St3gal2 protein_coding processed_transcript MGP_AJ_T0088661.1 MGP_AJ_G0033508.1 mouse_genomes_project 8 30971584 30977223 - MGP_AJ_P0088661 Smim18 protein_coding protein_coding MGP_AJ_T0090355.1 MGP_AJ_G0034034.1 mouse_genomes_project 8 103672486 103679981 + MGP_AJ_P0090355 Rltpr protein_coding unknown_likely_coding MGP_AJ_T0090356.1 MGP_AJ_G0034034.1 mouse_genomes_project 8 103677118 103684512 + MGP_AJ_P0090356 Rltpr protein_coding protein_coding MGP_AJ_T0090357.1 MGP_AJ_G0034034.1 mouse_genomes_project 8 103680481 103684537 + MGP_AJ_P0090357 Rltpr protein_coding unknown_likely_coding MGP_AJ_T0088310.1 MGP_AJ_G0033370.1 mouse_genomes_project 8 10855947 10861431 - MGP_AJ_P0088310 Coprs protein_coding protein_coding MGP_AJ_T0089149.1 MGP_AJ_G0033652.1 mouse_genomes_project 8 66726795 66727182 - MGP_AJ_P0089149 protein_coding protein_coding MGP_AJ_T0015980.1 MGP_AJ_G0014075.1 mouse_genomes_project 8 19006869 19007310 - processed_pseudogene processed_pseudogene MGP_AJ_T0088801.1 MGP_AJ_G0033554.1 mouse_genomes_project 8 42581452 42600932 - MGP_AJ_P0088801 F11 protein_coding protein_coding MGP_AJ_T0089017.1 MGP_AJ_G0033615.1 mouse_genomes_project 8 58293339 58429453 + MGP_AJ_P0089017 Nek1 protein_coding protein_coding MGP_AJ_T0089018.1 MGP_AJ_G0033615.1 mouse_genomes_project 8 58293339 58429460 + MGP_AJ_P0089018 Nek1 protein_coding protein_coding MGP_AJ_T0089019.1 MGP_AJ_G0033615.1 mouse_genomes_project 8 58293344 58345802 + Nek1 protein_coding retained_intron MGP_AJ_T0089020.1 MGP_AJ_G0033615.1 mouse_genomes_project 8 58293383 58405543 + Nek1 protein_coding retained_intron MGP_AJ_T0089021.1 MGP_AJ_G0033615.1 mouse_genomes_project 8 58293385 58331361 + Nek1 protein_coding retained_intron MGP_AJ_T0089022.1 MGP_AJ_G0033615.1 mouse_genomes_project 8 58293385 58330838 + Nek1 protein_coding retained_intron MGP_AJ_T0089023.1 MGP_AJ_G0033615.1 mouse_genomes_project 8 58351093 58388280 + MGP_AJ_P0089023 Nek1 protein_coding protein_coding MGP_AJ_T0088376.1 MGP_AJ_G0033388.1 mouse_genomes_project 8 15892197 15895512 - MGP_AJ_P0088376 Defb40 protein_coding protein_coding MGP_AJ_T0100217.1 MGP_AJ_G0038183.1 mouse_genomes_project 8 74655783 74655955 + Gm23260 snRNA snRNA MGP_AJ_T0009207.1 MGP_AJ_G0007395.1 mouse_genomes_project 8 120590043 120593135 + Gm22 lincRNA lincRNA MGP_AJ_T0009208.1 MGP_AJ_G0007395.1 mouse_genomes_project 8 120590043 120593139 + Gm22 lincRNA lincRNA MGP_AJ_T0101506.1 MGP_AJ_G0039472.1 mouse_genomes_project 8 83769108 83769232 + Gm23904 snoRNA snoRNA MGP_AJ_T0089377.1 MGP_AJ_G0033722.1 mouse_genomes_project 8 68838234 68841116 + MGP_AJ_P0089377 Use1 protein_coding protein_coding MGP_AJ_T0089378.1 MGP_AJ_G0033722.1 mouse_genomes_project 8 68838328 68841119 + MGP_AJ_P0089378 Use1 protein_coding protein_coding MGP_AJ_T0089379.1 MGP_AJ_G0033722.1 mouse_genomes_project 8 68838391 68839193 + MGP_AJ_P0089379 Use1 protein_coding protein_coding MGP_AJ_T0089380.1 MGP_AJ_G0033722.1 mouse_genomes_project 8 68838603 68841119 + Use1 protein_coding retained_intron MGP_AJ_T0089381.1 MGP_AJ_G0033722.1 mouse_genomes_project 8 68838603 68841119 + Use1 protein_coding retained_intron MGP_AJ_T0089382.1 MGP_AJ_G0033722.1 mouse_genomes_project 8 68838603 68841119 + MGP_AJ_P0089382 Use1 protein_coding protein_coding MGP_AJ_T0089383.1 MGP_AJ_G0033722.1 mouse_genomes_project 8 68838629 68840218 + Use1 protein_coding retained_intron MGP_AJ_T0089384.1 MGP_AJ_G0033722.1 mouse_genomes_project 8 68838629 68840385 + Use1 protein_coding retained_intron MGP_AJ_T0089385.1 MGP_AJ_G0033722.1 mouse_genomes_project 8 68838770 68840072 + Use1 protein_coding retained_intron MGP_AJ_T0089386.1 MGP_AJ_G0033722.1 mouse_genomes_project 8 68839027 68839601 + Use1 protein_coding retained_intron MGP_AJ_T0089387.1 MGP_AJ_G0033722.1 mouse_genomes_project 8 68839166 68841119 + Use1 protein_coding retained_intron MGP_AJ_T0089388.1 MGP_AJ_G0033722.1 mouse_genomes_project 8 68840178 68841058 + Use1 protein_coding retained_intron MGP_AJ_T0101468.1 MGP_AJ_G0039434.1 mouse_genomes_project 8 15523173 15523302 - Gm25763 snoRNA snoRNA MGP_AJ_T0090104.1 MGP_AJ_G0033944.1 mouse_genomes_project 8 92150752 92214331 + MGP_AJ_P0090104 Nlrc5 protein_coding unknown_likely_coding MGP_AJ_T0090105.1 MGP_AJ_G0033944.1 mouse_genomes_project 8 92153360 92214341 + MGP_AJ_P0090105 Nlrc5 protein_coding protein_coding MGP_AJ_T0090106.1 MGP_AJ_G0033944.1 mouse_genomes_project 8 92156719 92191418 + Nlrc5 protein_coding retained_intron MGP_AJ_T0090107.1 MGP_AJ_G0033944.1 mouse_genomes_project 8 92166857 92176415 + MGP_AJ_P0090107 Nlrc5 protein_coding nonsense_mediated_decay MGP_AJ_T0090108.1 MGP_AJ_G0033944.1 mouse_genomes_project 8 92208499 92210578 + Nlrc5 protein_coding retained_intron MGP_AJ_T0090109.1 MGP_AJ_G0033944.1 mouse_genomes_project 8 92212135 92214337 + Nlrc5 protein_coding retained_intron MGP_AJ_T0090110.1 MGP_AJ_G0033944.1 mouse_genomes_project 8 92212135 92214333 + MGP_AJ_P0090110 Nlrc5 protein_coding protein_coding MGP_AJ_T0015968.1 MGP_AJ_G0014063.1 mouse_genomes_project 8 15950334 15956750 - processed_pseudogene processed_pseudogene MGP_AJ_T0101525.1 MGP_AJ_G0039491.1 mouse_genomes_project 8 121447956 121448042 + Snord68 snoRNA snoRNA MGP_AJ_T0089157.1 MGP_AJ_G0033655.1 mouse_genomes_project 8 67074670 67079155 - MGP_AJ_P0089157 Zfp869 protein_coding protein_coding MGP_AJ_T0090358.1 MGP_AJ_G0034035.1 mouse_genomes_project 8 103684492 103687469 - MGP_AJ_P0090358 Acd protein_coding protein_coding MGP_AJ_T0088458.1 MGP_AJ_G0033440.1 mouse_genomes_project 8 20056628 20141493 + MGP_AJ_P0088458 Kat6a protein_coding protein_coding MGP_AJ_T0088459.1 MGP_AJ_G0033440.1 mouse_genomes_project 8 20056642 20141493 + MGP_AJ_P0088459 Kat6a protein_coding protein_coding MGP_AJ_T0088460.1 MGP_AJ_G0033440.1 mouse_genomes_project 8 20111570 20121365 + Kat6a protein_coding processed_transcript MGP_AJ_T0089646.1 MGP_AJ_G0033809.1 mouse_genomes_project 8 80673225 80674319 - MGP_AJ_P0089646 Gm10645 protein_coding protein_coding MGP_AJ_T0090532.1 MGP_AJ_G0034106.1 mouse_genomes_project 8 108829026 108829896 - Il34 protein_coding processed_transcript MGP_AJ_T0090533.1 MGP_AJ_G0034106.1 mouse_genomes_project 8 108829037 108899104 - MGP_AJ_P0090533 Il34 protein_coding protein_coding MGP_AJ_T0090534.1 MGP_AJ_G0034106.1 mouse_genomes_project 8 108829037 108899073 - MGP_AJ_P0090534 Il34 protein_coding protein_coding MGP_AJ_T0090535.1 MGP_AJ_G0034106.1 mouse_genomes_project 8 108842440 108880678 - Il34 protein_coding processed_transcript MGP_AJ_T0090536.1 MGP_AJ_G0034106.1 mouse_genomes_project 8 108842729 108899125 - Il34 protein_coding processed_transcript MGP_AJ_T0009200.1 MGP_AJ_G0007390.1 mouse_genomes_project 8 119734833 119735243 + Gm26784 lincRNA lincRNA MGP_AJ_T0005392.1 MGP_AJ_G0004569.1 mouse_genomes_project 8 112913472 112923162 - Gm16118 antisense antisense MGP_AJ_T0015975.1 MGP_AJ_G0014070.1 mouse_genomes_project 8 18033456 18034579 - processed_pseudogene processed_pseudogene MGP_AJ_T0088419.1 MGP_AJ_G0033424.1 mouse_genomes_project 8 19266969 19316558 - MGP_AJ_P0088419 Nek5 protein_coding protein_coding MGP_AJ_T0088420.1 MGP_AJ_G0033424.1 mouse_genomes_project 8 19266984 19316532 - MGP_AJ_P0088420 Nek5 protein_coding unknown_likely_coding MGP_AJ_T0090791.1 MGP_AJ_G0034186.1 mouse_genomes_project 8 119026233 119046564 + MGP_AJ_P0090791 Irf8 protein_coding protein_coding MGP_AJ_T0090792.1 MGP_AJ_G0034186.1 mouse_genomes_project 8 119026234 119033110 + Irf8 protein_coding retained_intron MGP_AJ_T0090793.1 MGP_AJ_G0034186.1 mouse_genomes_project 8 119026260 119043348 + MGP_AJ_P0090793 Irf8 protein_coding protein_coding MGP_AJ_T0090794.1 MGP_AJ_G0034186.1 mouse_genomes_project 8 119028514 119045451 + MGP_AJ_P0090794 Irf8 protein_coding protein_coding MGP_AJ_T0090796.1 MGP_AJ_G0034186.1 mouse_genomes_project 8 119035349 119043603 + Irf8 protein_coding retained_intron MGP_AJ_T0090797.1 MGP_AJ_G0034186.1 mouse_genomes_project 8 119042078 119043581 + Irf8 protein_coding processed_transcript MGP_AJ_T0010944.1 MGP_AJ_G0009066.1 mouse_genomes_project 8 9336826 9336912 + Gm25239 miRNA miRNA MGP_AJ_T0088177.1 MGP_AJ_G0033333.1 mouse_genomes_project 8 8367733 8394592 - MGP_AJ_P0088177 Rab20 protein_coding protein_coding MGP_AJ_T0100210.1 MGP_AJ_G0038176.1 mouse_genomes_project 8 50886773 50886835 + Gm27964 snRNA snRNA MGP_AJ_T0101495.1 MGP_AJ_G0039461.1 mouse_genomes_project 8 64239850 64239979 - Gm25275 snoRNA snoRNA MGP_AJ_T0088721.1 MGP_AJ_G0033529.1 mouse_genomes_project 8 36902759 36966844 - MGP_AJ_P0088721 Msr1 protein_coding protein_coding MGP_AJ_T0088722.1 MGP_AJ_G0033529.1 mouse_genomes_project 8 36925865 36966844 - MGP_AJ_P0088722 Msr1 protein_coding protein_coding MGP_AJ_T0098485.1 MGP_AJ_G0036469.1 mouse_genomes_project 8 119425432 119426522 + pseudogene pseudogene MGP_AJ_T0018477.1 MGP_AJ_G0015696.1 mouse_genomes_project 8 75070383 75138799 + processed_transcript processed_transcript MGP_AJ_T0018478.1 MGP_AJ_G0015696.1 mouse_genomes_project 8 75111462 75226492 + processed_transcript processed_transcript MGP_AJ_T0018479.1 MGP_AJ_G0015696.1 mouse_genomes_project 8 75221880 75225720 + processed_transcript processed_transcript MGP_AJ_T0088135.1 MGP_AJ_G0033314.1 mouse_genomes_project 8 1219379 1259722 - MGP_AJ_P0088135 Elavl1 protein_coding protein_coding MGP_AJ_T0089353.1 MGP_AJ_G0033711.1 mouse_genomes_project 8 68213726 68226696 + MGP_AJ_P0089353 Il12rb1 protein_coding protein_coding MGP_AJ_T0101507.1 MGP_AJ_G0039473.1 mouse_genomes_project 8 84508824 84508941 - Gm24781 snoRNA snoRNA MGP_AJ_T0005400.1 MGP_AJ_G0004576.1 mouse_genomes_project 8 120267783 120268755 - Gm27011 antisense antisense MGP_AJ_T0090799.1 MGP_AJ_G0034188.1 mouse_genomes_project 8 119389138 119405829 - MGP_AJ_P0090799 Mthfsd protein_coding protein_coding MGP_AJ_T0090800.1 MGP_AJ_G0034188.1 mouse_genomes_project 8 119392522 119398696 - Mthfsd protein_coding processed_transcript MGP_AJ_T0090801.1 MGP_AJ_G0034188.1 mouse_genomes_project 8 119395063 119405838 - MGP_AJ_P0090801 Mthfsd protein_coding protein_coding MGP_AJ_T0090802.1 MGP_AJ_G0034188.1 mouse_genomes_project 8 119395065 119405806 - Mthfsd protein_coding processed_transcript MGP_AJ_T0090803.1 MGP_AJ_G0034188.1 mouse_genomes_project 8 119395067 119405821 - MGP_AJ_P0090803 Mthfsd protein_coding protein_coding MGP_AJ_T0090804.1 MGP_AJ_G0034188.1 mouse_genomes_project 8 119395277 119399104 - Mthfsd protein_coding retained_intron MGP_AJ_T0090805.1 MGP_AJ_G0034188.1 mouse_genomes_project 8 119395361 119405903 - MGP_AJ_P0090805 Mthfsd protein_coding protein_coding MGP_AJ_T0090806.1 MGP_AJ_G0034188.1 mouse_genomes_project 8 119395447 119405890 - Mthfsd protein_coding retained_intron MGP_AJ_T0090807.1 MGP_AJ_G0034188.1 mouse_genomes_project 8 119396218 119405799 - Mthfsd protein_coding processed_transcript MGP_AJ_T0090808.1 MGP_AJ_G0034188.1 mouse_genomes_project 8 119396518 119403143 - Mthfsd protein_coding processed_transcript MGP_AJ_T0090809.1 MGP_AJ_G0034188.1 mouse_genomes_project 8 119398686 119405809 - MGP_AJ_P0090809 Mthfsd protein_coding protein_coding MGP_AJ_T0090810.1 MGP_AJ_G0034188.1 mouse_genomes_project 8 119400233 119405154 - Mthfsd protein_coding retained_intron MGP_AJ_T0090811.1 MGP_AJ_G0034188.1 mouse_genomes_project 8 119401362 119403200 - Mthfsd protein_coding processed_transcript MGP_AJ_T0090812.1 MGP_AJ_G0034188.1 mouse_genomes_project 8 119401609 119405824 - Mthfsd protein_coding processed_transcript MGP_AJ_T0090813.1 MGP_AJ_G0034188.1 mouse_genomes_project 8 119401985 119405854 - Mthfsd protein_coding processed_transcript MGP_AJ_T0010997.1 MGP_AJ_G0009119.1 mouse_genomes_project 8 92189676 92189736 + Mir7072 miRNA miRNA MGP_AJ_T0088396.1 MGP_AJ_G0033406.1 mouse_genomes_project 8 18884601 18887256 - MGP_AJ_P0088396 protein_coding protein_coding MGP_AJ_T0089058.1 MGP_AJ_G0033625.1 mouse_genomes_project 8 62007087 62022761 - MGP_AJ_P0089058 Msmo1 protein_coding protein_coding MGP_AJ_T0089059.1 MGP_AJ_G0033625.1 mouse_genomes_project 8 62007157 62022550 - Msmo1 protein_coding processed_transcript MGP_AJ_T0089060.1 MGP_AJ_G0033625.1 mouse_genomes_project 8 62007175 62022547 - Msmo1 protein_coding retained_intron MGP_AJ_T0089061.1 MGP_AJ_G0033625.1 mouse_genomes_project 8 62007573 62010932 - Msmo1 protein_coding processed_transcript MGP_AJ_T0089062.1 MGP_AJ_G0033625.1 mouse_genomes_project 8 62012725 62020055 - MGP_AJ_P0089062 Msmo1 protein_coding protein_coding MGP_AJ_T0089063.1 MGP_AJ_G0033625.1 mouse_genomes_project 8 62014046 62022517 - Msmo1 protein_coding retained_intron MGP_AJ_T0089064.1 MGP_AJ_G0033625.1 mouse_genomes_project 8 62016714 62022517 - MGP_AJ_P0089064 Msmo1 protein_coding protein_coding MGP_AJ_T0089345.1 MGP_AJ_G0033708.1 mouse_genomes_project 8 68167429 68171318 - MGP_AJ_P0089345 Ifi30 protein_coding protein_coding MGP_AJ_T0089607.1 MGP_AJ_G0033793.1 mouse_genomes_project 8 76744662 76761385 - MGP_AJ_P0089607 Mmaa protein_coding unknown_likely_coding MGP_AJ_T0015991.1 MGP_AJ_G0014086.1 mouse_genomes_project 8 35415600 35418403 + processed_pseudogene processed_pseudogene MGP_AJ_T0005388.1 MGP_AJ_G0004565.1 mouse_genomes_project 8 110711627 110727140 - Gm26994 antisense antisense MGP_AJ_T0016000.1 MGP_AJ_G0014095.1 mouse_genomes_project 8 61053753 61054755 + processed_pseudogene processed_pseudogene MGP_AJ_T0089333.1 MGP_AJ_G0033702.1 mouse_genomes_project 8 68101362 68105303 + MGP_AJ_P0089333 Jund protein_coding protein_coding MGP_AJ_T0011719.1 MGP_AJ_G0009841.1 mouse_genomes_project 8 62219924 62220015 + Gm26210 misc_RNA misc_RNA MGP_AJ_T0089372.1 MGP_AJ_G0033721.1 mouse_genomes_project 8 68734670 68827988 + MGP_AJ_P0089372 Myo9b protein_coding protein_coding MGP_AJ_T0089373.1 MGP_AJ_G0033721.1 mouse_genomes_project 8 68734670 68827988 + MGP_AJ_P0089373 Myo9b protein_coding protein_coding MGP_AJ_T0089374.1 MGP_AJ_G0033721.1 mouse_genomes_project 8 68734670 68827988 + MGP_AJ_P0089374 Myo9b protein_coding protein_coding MGP_AJ_T0089375.1 MGP_AJ_G0033721.1 mouse_genomes_project 8 68734724 68803559 + MGP_AJ_P0089375 Myo9b protein_coding unknown_likely_coding MGP_AJ_T0089376.1 MGP_AJ_G0033721.1 mouse_genomes_project 8 68809390 68826733 + MGP_AJ_P0089376 Myo9b protein_coding unknown_likely_coding MGP_AJ_T0090366.1 MGP_AJ_G0034040.1 mouse_genomes_project 8 103755885 103818371 - MGP_AJ_P0090366 Ranbp10 protein_coding protein_coding MGP_AJ_T0089512.1 MGP_AJ_G0033758.1 mouse_genomes_project 8 69754160 69762657 - MGP_AJ_P0089512 Cib3 protein_coding protein_coding MGP_AJ_T0089519.1 MGP_AJ_G0033761.1 mouse_genomes_project 8 69855380 69858004 + MGP_AJ_P0089519 Klf2 protein_coding protein_coding MGP_AJ_T0016040.1 MGP_AJ_G0014135.1 mouse_genomes_project 8 122382130 122382821 - processed_pseudogene processed_pseudogene MGP_AJ_T0091059.1 MGP_AJ_G0034258.1 mouse_genomes_project 8 123177430 123214924 + MGP_AJ_P0091059 Trim67 protein_coding protein_coding MGP_AJ_T0091060.1 MGP_AJ_G0034258.1 mouse_genomes_project 8 123177503 123214935 + MGP_AJ_P0091060 Trim67 protein_coding protein_coding MGP_AJ_T0088294.1 MGP_AJ_G0033364.1 mouse_genomes_project 8 10528770 10545855 - Rasa3 protein_coding retained_intron MGP_AJ_T0088295.1 MGP_AJ_G0033364.1 mouse_genomes_project 8 10528770 10639102 - MGP_AJ_P0088295 Rasa3 protein_coding protein_coding MGP_AJ_T0088296.1 MGP_AJ_G0033364.1 mouse_genomes_project 8 10539286 10539860 - Rasa3 protein_coding retained_intron MGP_AJ_T0088297.1 MGP_AJ_G0033364.1 mouse_genomes_project 8 10557625 10567925 - Rasa3 protein_coding retained_intron MGP_AJ_T0088298.1 MGP_AJ_G0033364.1 mouse_genomes_project 8 10557626 10638950 - MGP_AJ_P0088298 Rasa3 protein_coding nonsense_mediated_decay MGP_AJ_T0088299.1 MGP_AJ_G0033364.1 mouse_genomes_project 8 10559911 10638982 - Rasa3 protein_coding retained_intron MGP_AJ_T0005398.1 MGP_AJ_G0004575.1 mouse_genomes_project 8 120224212 120234267 + BC048644 antisense antisense MGP_AJ_T0005399.1 MGP_AJ_G0004575.1 mouse_genomes_project 8 120224212 120226196 + BC048644 antisense antisense MGP_AJ_T0011016.1 MGP_AJ_G0009138.1 mouse_genomes_project 8 115699587 115699644 + Mir7077 miRNA miRNA MGP_AJ_T0009182.1 MGP_AJ_G0007376.1 mouse_genomes_project 8 107115742 107291688 + D030068K23Rik lincRNA lincRNA MGP_AJ_T0009183.1 MGP_AJ_G0007376.1 mouse_genomes_project 8 107115743 107266240 + D030068K23Rik lincRNA lincRNA MGP_AJ_T0009184.1 MGP_AJ_G0007376.1 mouse_genomes_project 8 107287916 107312283 + D030068K23Rik lincRNA lincRNA MGP_AJ_T0093967.1 MGP_AJ_G0035166.1 mouse_genomes_project 9 100331821 100372246 + MGP_AJ_P0093967 Ky protein_coding protein_coding MGP_AJ_T0093968.1 MGP_AJ_G0035166.1 mouse_genomes_project 9 100347375 100354099 + Ky protein_coding retained_intron MGP_AJ_T0091236.1 MGP_AJ_G0034319.1 mouse_genomes_project 9 10216555 10260827 + MGP_AJ_P0091236 Ccdc82 protein_coding protein_coding MGP_AJ_T0091237.1 MGP_AJ_G0034319.1 mouse_genomes_project 9 10216568 10223126 + MGP_AJ_P0091237 Ccdc82 protein_coding protein_coding MGP_AJ_T0095042.1 MGP_AJ_G0035341.1 mouse_genomes_project 9 108908728 108921109 + MGP_AJ_P0095042 Prss46 protein_coding protein_coding MGP_AJ_T0095043.1 MGP_AJ_G0035341.1 mouse_genomes_project 9 108913755 108921103 + MGP_AJ_P0095043 Prss46 protein_coding protein_coding MGP_AJ_T0018565.1 MGP_AJ_G0015731.1 mouse_genomes_project 9 94554115 94562089 + C430002N11Rik processed_transcript retained_intron MGP_AJ_T0018566.1 MGP_AJ_G0015731.1 mouse_genomes_project 9 94554128 94562884 + C430002N11Rik processed_transcript retained_intron MGP_AJ_T0018567.1 MGP_AJ_G0015731.1 mouse_genomes_project 9 94554128 94571914 + C430002N11Rik processed_transcript lincRNA MGP_AJ_T0018568.1 MGP_AJ_G0015731.1 mouse_genomes_project 9 94554138 94562101 + C430002N11Rik processed_transcript retained_intron MGP_AJ_T0018569.1 MGP_AJ_G0015731.1 mouse_genomes_project 9 94554154 94561780 + C430002N11Rik processed_transcript lincRNA MGP_AJ_T0093245.1 MGP_AJ_G0035000.1 mouse_genomes_project 9 70570513 70597165 + MGP_AJ_P0093245 Pygo1 protein_coding protein_coding MGP_AJ_T0091525.1 MGP_AJ_G0034435.1 mouse_genomes_project 9 18487195 18491318 - MGP_AJ_P0091525 Yipf2 protein_coding protein_coding MGP_AJ_T0091526.1 MGP_AJ_G0034435.1 mouse_genomes_project 9 18487195 18491318 - MGP_AJ_P0091526 Yipf2 protein_coding protein_coding MGP_AJ_T0091527.1 MGP_AJ_G0034435.1 mouse_genomes_project 9 18487195 18491318 - MGP_AJ_P0091527 Yipf2 protein_coding protein_coding MGP_AJ_T0091516.1 MGP_AJ_G0034434.1 mouse_genomes_project 9 18443161 18487955 + MGP_AJ_P0091516 Carm1 protein_coding protein_coding MGP_AJ_T0091517.1 MGP_AJ_G0034434.1 mouse_genomes_project 9 18443161 18487974 + MGP_AJ_P0091517 Carm1 protein_coding protein_coding MGP_AJ_T0091518.1 MGP_AJ_G0034434.1 mouse_genomes_project 9 18443161 18487954 + MGP_AJ_P0091518 Carm1 protein_coding protein_coding MGP_AJ_T0091519.1 MGP_AJ_G0034434.1 mouse_genomes_project 9 18443226 18487954 + Carm1 protein_coding retained_intron MGP_AJ_T0091520.1 MGP_AJ_G0034434.1 mouse_genomes_project 9 18443226 18487954 + MGP_AJ_P0091520 Carm1 protein_coding nonsense_mediated_decay MGP_AJ_T0091521.1 MGP_AJ_G0034434.1 mouse_genomes_project 9 18443353 18477951 + Carm1 protein_coding processed_transcript MGP_AJ_T0091522.1 MGP_AJ_G0034434.1 mouse_genomes_project 9 18473587 18478823 + Carm1 protein_coding processed_transcript MGP_AJ_T0091523.1 MGP_AJ_G0034434.1 mouse_genomes_project 9 18485704 18486687 + Carm1 protein_coding processed_transcript MGP_AJ_T0091524.1 MGP_AJ_G0034434.1 mouse_genomes_project 9 18485889 18486616 + Carm1 protein_coding processed_transcript MGP_AJ_T0092975.1 MGP_AJ_G0034949.1 mouse_genomes_project 9 63462527 63588277 + MGP_AJ_P0092975 Csnk1g1 protein_coding protein_coding MGP_AJ_T0092976.1 MGP_AJ_G0034949.1 mouse_genomes_project 9 63462577 63549949 + Csnk1g1 protein_coding retained_intron MGP_AJ_T0092977.1 MGP_AJ_G0034949.1 mouse_genomes_project 9 63462580 63591384 + MGP_AJ_P0092977 Csnk1g1 protein_coding protein_coding MGP_AJ_T0092978.1 MGP_AJ_G0034949.1 mouse_genomes_project 9 63462589 63591390 + MGP_AJ_P0092978 Csnk1g1 protein_coding protein_coding MGP_AJ_T0092979.1 MGP_AJ_G0034949.1 mouse_genomes_project 9 63462623 63507466 + MGP_AJ_P0092979 Csnk1g1 protein_coding protein_coding MGP_AJ_T0092980.1 MGP_AJ_G0034949.1 mouse_genomes_project 9 63462633 63525169 + Csnk1g1 protein_coding retained_intron MGP_AJ_T0092981.1 MGP_AJ_G0034949.1 mouse_genomes_project 9 63462691 63586810 + MGP_AJ_P0092981 Csnk1g1 protein_coding protein_coding MGP_AJ_T0092982.1 MGP_AJ_G0034949.1 mouse_genomes_project 9 63463046 63589446 + MGP_AJ_P0092982 Csnk1g1 protein_coding protein_coding MGP_AJ_T0092983.1 MGP_AJ_G0034949.1 mouse_genomes_project 9 63477782 63577218 + MGP_AJ_P0092983 Csnk1g1 protein_coding protein_coding MGP_AJ_T0092984.1 MGP_AJ_G0034949.1 mouse_genomes_project 9 63507154 63591380 + MGP_AJ_P0092984 Csnk1g1 protein_coding protein_coding MGP_AJ_T0092985.1 MGP_AJ_G0034949.1 mouse_genomes_project 9 63553797 63578697 + MGP_AJ_P0092985 Csnk1g1 protein_coding nonsense_mediated_decay MGP_AJ_T0092986.1 MGP_AJ_G0034949.1 mouse_genomes_project 9 63556109 63559053 + Csnk1g1 protein_coding retained_intron MGP_AJ_T0092987.1 MGP_AJ_G0034949.1 mouse_genomes_project 9 63556133 63586099 + MGP_AJ_P0092987 Csnk1g1 protein_coding protein_coding MGP_AJ_T0092988.1 MGP_AJ_G0034949.1 mouse_genomes_project 9 63556476 63577218 + MGP_AJ_P0092988 Csnk1g1 protein_coding protein_coding MGP_AJ_T0092989.1 MGP_AJ_G0034949.1 mouse_genomes_project 9 63582388 63586117 + Csnk1g1 protein_coding retained_intron MGP_AJ_T0091479.1 MGP_AJ_G0034423.1 mouse_genomes_project 9 18128724 18134296 - MGP_AJ_P0091479 S1pr5 protein_coding protein_coding MGP_AJ_T0094879.1 MGP_AJ_G0035317.1 mouse_genomes_project 9 107860346 107868334 + MGP_AJ_P0094879 Spink8 protein_coding protein_coding MGP_AJ_T0094880.1 MGP_AJ_G0035317.1 mouse_genomes_project 9 107864285 107874362 + MGP_AJ_P0094880 Spink8 protein_coding protein_coding MGP_AJ_T0094881.1 MGP_AJ_G0035317.1 mouse_genomes_project 9 107864368 107874357 + MGP_AJ_P0094881 Spink8 protein_coding protein_coding MGP_AJ_T0100252.1 MGP_AJ_G0038218.1 mouse_genomes_project 9 15588124 15588226 + Gm24546 snRNA snRNA MGP_AJ_T0011735.1 MGP_AJ_G0009857.1 mouse_genomes_project 9 39783141 39783200 - Gm24420 misc_RNA misc_RNA MGP_AJ_T0100309.1 MGP_AJ_G0038275.1 mouse_genomes_project 9 105809360 105809459 + Gm23856 snRNA snRNA MGP_AJ_T0091951.1 MGP_AJ_G0034623.1 mouse_genomes_project 9 36906994 36908024 - MGP_AJ_P0091951 Olfr149 protein_coding protein_coding MGP_AJ_T0016104.1 MGP_AJ_G0014199.1 mouse_genomes_project 9 75265976 75267177 - processed_pseudogene processed_pseudogene MGP_AJ_T0095454.1 MGP_AJ_G0035460.1 mouse_genomes_project 9 121801027 121838857 - Slc6a20b protein_coding retained_intron MGP_AJ_T0095455.1 MGP_AJ_G0035460.1 mouse_genomes_project 9 121801030 121839023 - MGP_AJ_P0095455 Slc6a20b protein_coding protein_coding MGP_AJ_T0095456.1 MGP_AJ_G0035460.1 mouse_genomes_project 9 121802030 121835022 - Slc6a20b protein_coding processed_transcript MGP_AJ_T0095457.1 MGP_AJ_G0035460.1 mouse_genomes_project 9 121802036 121838785 - MGP_AJ_P0095457 Slc6a20b protein_coding nonsense_mediated_decay MGP_AJ_T0095458.1 MGP_AJ_G0035460.1 mouse_genomes_project 9 121818595 121838741 - MGP_AJ_P0095458 Slc6a20b protein_coding nonsense_mediated_decay MGP_AJ_T0095459.1 MGP_AJ_G0035460.1 mouse_genomes_project 9 121820199 121838959 - Slc6a20b protein_coding processed_transcript MGP_AJ_T0101564.1 MGP_AJ_G0039530.1 mouse_genomes_project 9 61693187 61693257 + Gm22571 snoRNA snoRNA MGP_AJ_T0095264.1 MGP_AJ_G0035396.1 mouse_genomes_project 9 117456776 117541878 - MGP_AJ_P0095264 Oxsr1 protein_coding protein_coding MGP_AJ_T0095265.1 MGP_AJ_G0035396.1 mouse_genomes_project 9 117459012 117541773 - MGP_AJ_P0095265 Oxsr1 protein_coding nonsense_mediated_decay MGP_AJ_T0095266.1 MGP_AJ_G0035396.1 mouse_genomes_project 9 117459487 117461746 - Oxsr1 protein_coding retained_intron MGP_AJ_T0095267.1 MGP_AJ_G0035396.1 mouse_genomes_project 9 117461151 117483176 - MGP_AJ_P0095267 Oxsr1 protein_coding nonsense_mediated_decay MGP_AJ_T0009295.1 MGP_AJ_G0007469.1 mouse_genomes_project 9 87593784 87596978 + 1700017I07Rik lincRNA lincRNA MGP_AJ_T0094163.1 MGP_AJ_G0035201.1 mouse_genomes_project 9 104065118 104086337 + MGP_AJ_P0094163 Wdr82 protein_coding protein_coding MGP_AJ_T0094164.1 MGP_AJ_G0035201.1 mouse_genomes_project 9 104065119 104068279 + Wdr82 protein_coding retained_intron MGP_AJ_T0094165.1 MGP_AJ_G0035201.1 mouse_genomes_project 9 104070942 104081718 + MGP_AJ_P0094165 Wdr82 protein_coding nonsense_mediated_decay MGP_AJ_T0011035.1 MGP_AJ_G0009157.1 mouse_genomes_project 9 6874693 6874784 + Mir6237 miRNA miRNA MGP_AJ_T0092614.1 MGP_AJ_G0034848.1 mouse_genomes_project 9 54905388 54917115 + MGP_AJ_P0092614 Cox5a protein_coding protein_coding MGP_AJ_T0092941.1 MGP_AJ_G0034941.1 mouse_genomes_project 9 63040586 63056120 - MGP_AJ_P0092941 Ankdd1a protein_coding protein_coding MGP_AJ_T0092942.1 MGP_AJ_G0034941.1 mouse_genomes_project 9 63040586 63059318 - MGP_AJ_P0092942 Ankdd1a protein_coding unknown_likely_coding MGP_AJ_T0002456.1 MGP_AJ_G0002365.1 mouse_genomes_project 9 105720991 105722063 - TEC TEC MGP_AJ_T0018539.1 MGP_AJ_G0015720.1 mouse_genomes_project 9 70029827 70038386 + Gm27230 processed_transcript lincRNA MGP_AJ_T0018540.1 MGP_AJ_G0015720.1 mouse_genomes_project 9 70029833 70036579 + Gm27230 processed_transcript lincRNA MGP_AJ_T0018541.1 MGP_AJ_G0015720.1 mouse_genomes_project 9 70037294 70037968 + Gm27230 processed_transcript retained_intron MGP_AJ_T0092479.1 MGP_AJ_G0034806.1 mouse_genomes_project 9 51882112 51897497 - MGP_AJ_P0092479 Cib2 protein_coding protein_coding MGP_AJ_T0092990.1 MGP_AJ_G0034950.1 mouse_genomes_project 9 63606760 63613876 + MGP_AJ_P0092990 Ppib protein_coding protein_coding MGP_AJ_T0095431.1 MGP_AJ_G0035452.1 mouse_genomes_project 9 121260202 121307341 - MGP_AJ_P0095431 Zdhhc3 protein_coding nonsense_mediated_decay MGP_AJ_T0095432.1 MGP_AJ_G0035452.1 mouse_genomes_project 9 121268363 121307399 - MGP_AJ_P0095432 Zdhhc3 protein_coding protein_coding MGP_AJ_T0095433.1 MGP_AJ_G0035452.1 mouse_genomes_project 9 121271049 121307374 - MGP_AJ_P0095433 Zdhhc3 protein_coding nonsense_mediated_decay MGP_AJ_T0095434.1 MGP_AJ_G0035452.1 mouse_genomes_project 9 121271717 121307360 - MGP_AJ_P0095434 Zdhhc3 protein_coding nonsense_mediated_decay MGP_AJ_T0095435.1 MGP_AJ_G0035452.1 mouse_genomes_project 9 121272257 121307372 - MGP_AJ_P0095435 Zdhhc3 protein_coding nonsense_mediated_decay MGP_AJ_T0095436.1 MGP_AJ_G0035452.1 mouse_genomes_project 9 121272517 121294535 - MGP_AJ_P0095436 Zdhhc3 protein_coding nonsense_mediated_decay MGP_AJ_T0095437.1 MGP_AJ_G0035452.1 mouse_genomes_project 9 121274575 121307315 - MGP_AJ_P0095437 Zdhhc3 protein_coding nonsense_mediated_decay MGP_AJ_T0095438.1 MGP_AJ_G0035452.1 mouse_genomes_project 9 121277061 121307398 - Zdhhc3 protein_coding retained_intron MGP_AJ_T0095439.1 MGP_AJ_G0035452.1 mouse_genomes_project 9 121278506 121307318 - MGP_AJ_P0095439 Zdhhc3 protein_coding nonsense_mediated_decay MGP_AJ_T0095440.1 MGP_AJ_G0035452.1 mouse_genomes_project 9 121283237 121307372 - MGP_AJ_P0095440 Zdhhc3 protein_coding nonsense_mediated_decay MGP_AJ_T0095441.1 MGP_AJ_G0035452.1 mouse_genomes_project 9 121294505 121307026 - MGP_AJ_P0095441 Zdhhc3 protein_coding protein_coding MGP_AJ_T0091839.1 MGP_AJ_G0034541.1 mouse_genomes_project 9 34406286 34425630 + MGP_AJ_P0091839 Hepacam protein_coding protein_coding MGP_AJ_T0092507.1 MGP_AJ_G0034816.1 mouse_genomes_project 9 52319929 52347397 + MGP_AJ_P0092507 Chrna5 protein_coding protein_coding MGP_AJ_T0092508.1 MGP_AJ_G0034816.1 mouse_genomes_project 9 52320665 52346193 + MGP_AJ_P0092508 Chrna5 protein_coding unknown_likely_coding MGP_AJ_T0002365.1 MGP_AJ_G0002275.1 mouse_genomes_project 9 69561569 69563564 - TEC TEC MGP_AJ_T0011733.1 MGP_AJ_G0009855.1 mouse_genomes_project 9 17676114 17676435 + Gm26274 misc_RNA misc_RNA MGP_AJ_T0093610.1 MGP_AJ_G0035087.1 mouse_genomes_project 9 86085827 86131449 + MGP_AJ_P0093610 Nt5e protein_coding protein_coding MGP_AJ_T0093611.1 MGP_AJ_G0035087.1 mouse_genomes_project 9 86086307 86089891 + Nt5e protein_coding retained_intron MGP_AJ_T0093612.1 MGP_AJ_G0035087.1 mouse_genomes_project 9 86086322 86127176 + Nt5e protein_coding retained_intron MGP_AJ_T0016156.1 MGP_AJ_G0014251.1 mouse_genomes_project 9 98243669 98243934 + processed_pseudogene processed_pseudogene MGP_AJ_T0091813.1 MGP_AJ_G0034536.1 mouse_genomes_project 9 33845036 33874503 + MGP_AJ_P0091813 Fez1 protein_coding protein_coding MGP_AJ_T0091814.1 MGP_AJ_G0034536.1 mouse_genomes_project 9 33855983 33904676 + MGP_AJ_P0091814 Fez1 protein_coding protein_coding MGP_AJ_T0091815.1 MGP_AJ_G0034536.1 mouse_genomes_project 9 33856961 33888612 + MGP_AJ_P0091815 Fez1 protein_coding protein_coding MGP_AJ_T0091816.1 MGP_AJ_G0034536.1 mouse_genomes_project 9 33867497 33904392 + MGP_AJ_P0091816 Fez1 protein_coding protein_coding MGP_AJ_T0091817.1 MGP_AJ_G0034536.1 mouse_genomes_project 9 33867616 33893492 + MGP_AJ_P0091817 Fez1 protein_coding nonsense_mediated_decay MGP_AJ_T0091818.1 MGP_AJ_G0034536.1 mouse_genomes_project 9 33894589 33896477 + MGP_AJ_P0091818 Fez1 protein_coding protein_coding MGP_AJ_T0091819.1 MGP_AJ_G0034536.1 mouse_genomes_project 9 33895814 33904552 + Fez1 protein_coding retained_intron MGP_AJ_T0091820.1 MGP_AJ_G0034536.1 mouse_genomes_project 9 33896214 33904672 + MGP_AJ_P0091820 Fez1 protein_coding protein_coding MGP_AJ_T0095062.1 MGP_AJ_G0035347.1 mouse_genomes_project 9 109019806 109041872 + MGP_AJ_P0095062 Lrrc2 protein_coding protein_coding MGP_AJ_T0095063.1 MGP_AJ_G0035347.1 mouse_genomes_project 9 109019836 109048217 + MGP_AJ_P0095063 Lrrc2 protein_coding protein_coding MGP_AJ_T0095064.1 MGP_AJ_G0035347.1 mouse_genomes_project 9 109026893 109046094 + MGP_AJ_P0095064 Lrrc2 protein_coding nonsense_mediated_decay MGP_AJ_T0095183.1 MGP_AJ_G0035374.1 mouse_genomes_project 9 112923664 112948785 - MGP_AJ_P0095183 Cmtm7 protein_coding protein_coding MGP_AJ_T0095184.1 MGP_AJ_G0035374.1 mouse_genomes_project 9 112923664 112948785 - MGP_AJ_P0095184 Cmtm7 protein_coding protein_coding MGP_AJ_T0093983.1 MGP_AJ_G0035169.1 mouse_genomes_project 9 100553380 100557421 + MGP_AJ_P0093983 Amotl2 protein_coding protein_coding MGP_AJ_T0093984.1 MGP_AJ_G0035169.1 mouse_genomes_project 9 100553510 100570106 + MGP_AJ_P0093984 Amotl2 protein_coding protein_coding MGP_AJ_T0093985.1 MGP_AJ_G0035169.1 mouse_genomes_project 9 100553997 100557433 + MGP_AJ_P0093985 Amotl2 protein_coding protein_coding MGP_AJ_T0093986.1 MGP_AJ_G0035169.1 mouse_genomes_project 9 100554376 100570111 + MGP_AJ_P0093986 Amotl2 protein_coding nonsense_mediated_decay MGP_AJ_T0093987.1 MGP_AJ_G0035169.1 mouse_genomes_project 9 100554504 100570114 + MGP_AJ_P0093987 Amotl2 protein_coding protein_coding MGP_AJ_T0093988.1 MGP_AJ_G0035169.1 mouse_genomes_project 9 100555137 100557092 + MGP_AJ_P0093988 Amotl2 protein_coding protein_coding MGP_AJ_T0093989.1 MGP_AJ_G0035169.1 mouse_genomes_project 9 100555178 100557100 + MGP_AJ_P0093989 Amotl2 protein_coding protein_coding MGP_AJ_T0093990.1 MGP_AJ_G0035169.1 mouse_genomes_project 9 100555193 100556912 + MGP_AJ_P0093990 Amotl2 protein_coding protein_coding MGP_AJ_T0093991.1 MGP_AJ_G0035169.1 mouse_genomes_project 9 100555276 100565195 + MGP_AJ_P0093991 Amotl2 protein_coding protein_coding MGP_AJ_T0093992.1 MGP_AJ_G0035169.1 mouse_genomes_project 9 100558994 100565018 + Amotl2 protein_coding processed_transcript MGP_AJ_T0093993.1 MGP_AJ_G0035169.1 mouse_genomes_project 9 100559212 100570111 + Amotl2 protein_coding retained_intron MGP_AJ_T0093994.1 MGP_AJ_G0035169.1 mouse_genomes_project 9 100565022 100569034 + Amotl2 protein_coding processed_transcript MGP_AJ_T0093995.1 MGP_AJ_G0035169.1 mouse_genomes_project 9 100567423 100569020 + Amotl2 protein_coding retained_intron MGP_AJ_T0093741.1 MGP_AJ_G0035118.1 mouse_genomes_project 9 93483598 93530591 - MGP_AJ_P0093741 Trpc1 protein_coding protein_coding MGP_AJ_T0093742.1 MGP_AJ_G0035118.1 mouse_genomes_project 9 93485143 93530591 - MGP_AJ_P0093742 Trpc1 protein_coding protein_coding MGP_AJ_T0093743.1 MGP_AJ_G0035118.1 mouse_genomes_project 9 93485143 93530591 - MGP_AJ_P0093743 Trpc1 protein_coding nonsense_mediated_decay MGP_AJ_T0093744.1 MGP_AJ_G0035118.1 mouse_genomes_project 9 93485143 93530591 - MGP_AJ_P0093744 Trpc1 protein_coding nonsense_mediated_decay MGP_AJ_T0093745.1 MGP_AJ_G0035118.1 mouse_genomes_project 9 93495755 93498863 - Trpc1 protein_coding retained_intron MGP_AJ_T0093746.1 MGP_AJ_G0035118.1 mouse_genomes_project 9 93501457 93512449 - MGP_AJ_P0093746 Trpc1 protein_coding protein_coding MGP_AJ_T0093747.1 MGP_AJ_G0035118.1 mouse_genomes_project 9 93529270 93530608 - Trpc1 protein_coding retained_intron MGP_AJ_T0009219.1 MGP_AJ_G0007406.1 mouse_genomes_project 9 22085013 22107412 + Gm29642 lincRNA lincRNA MGP_AJ_T0091243.1 MGP_AJ_G0034322.1 mouse_genomes_project 9 10644185 10701210 + MGP_AJ_P0091243 Mtmr2 protein_coding protein_coding MGP_AJ_T0091244.1 MGP_AJ_G0034322.1 mouse_genomes_project 9 10644956 10701210 + MGP_AJ_P0091244 Mtmr2 protein_coding protein_coding MGP_AJ_T0091245.1 MGP_AJ_G0034322.1 mouse_genomes_project 9 10644960 10676062 + Mtmr2 protein_coding processed_transcript MGP_AJ_T0091246.1 MGP_AJ_G0034322.1 mouse_genomes_project 9 10644972 10701210 + MGP_AJ_P0091246 Mtmr2 protein_coding nonsense_mediated_decay MGP_AJ_T0091247.1 MGP_AJ_G0034322.1 mouse_genomes_project 9 10645094 10678576 + MGP_AJ_P0091247 Mtmr2 protein_coding protein_coding MGP_AJ_T0091248.1 MGP_AJ_G0034322.1 mouse_genomes_project 9 10645164 10678576 + MGP_AJ_P0091248 Mtmr2 protein_coding protein_coding MGP_AJ_T0091249.1 MGP_AJ_G0034322.1 mouse_genomes_project 9 10657994 10684366 + MGP_AJ_P0091249 Mtmr2 protein_coding protein_coding MGP_AJ_T0091250.1 MGP_AJ_G0034322.1 mouse_genomes_project 9 10658757 10678574 + Mtmr2 protein_coding processed_transcript MGP_AJ_T0091251.1 MGP_AJ_G0034322.1 mouse_genomes_project 9 10688299 10701209 + Mtmr2 protein_coding retained_intron MGP_AJ_T0002419.1 MGP_AJ_G0002328.1 mouse_genomes_project 9 93998573 94001591 + TEC TEC MGP_AJ_T0091458.1 MGP_AJ_G0034412.1 mouse_genomes_project 9 17879141 17885325 + MGP_AJ_P0091458 Mrpl4 protein_coding protein_coding MGP_AJ_T0091383.1 MGP_AJ_G0034385.1 mouse_genomes_project 9 16906087 16907164 - MGP_AJ_P0091383 Olfr866 protein_coding protein_coding MGP_AJ_T0092313.1 MGP_AJ_G0034751.1 mouse_genomes_project 9 46658457 46669538 + MGP_AJ_P0092313 Gm4894 protein_coding protein_coding MGP_AJ_T0091637.1 MGP_AJ_G0034484.1 mouse_genomes_project 9 23949493 24016166 + MGP_AJ_P0091637 Ncapd3 protein_coding protein_coding MGP_AJ_T0099113.1 MGP_AJ_G0037084.1 mouse_genomes_project 9 106500890 106501372 - Gm38163 sense_intronic sense_intronic MGP_AJ_T0092626.1 MGP_AJ_G0034855.1 mouse_genomes_project 9 55013229 55032374 - MGP_AJ_P0092626 Csk protein_coding protein_coding MGP_AJ_T0011743.1 MGP_AJ_G0009865.1 mouse_genomes_project 9 87819011 87819279 + Gm23759 misc_RNA misc_RNA MGP_AJ_T0091334.1 MGP_AJ_G0034348.1 mouse_genomes_project 9 12848721 13319183 - MGP_AJ_P0091334 Fat3 protein_coding protein_coding MGP_AJ_T0011031.1 MGP_AJ_G0009153.1 mouse_genomes_project 9 1329217 1329301 - Gm23811 miRNA miRNA MGP_AJ_T0005447.1 MGP_AJ_G0004610.1 mouse_genomes_project 9 51612654 51641119 - Gldnos antisense antisense MGP_AJ_T0092410.1 MGP_AJ_G0034776.1 mouse_genomes_project 9 48450908 48471345 - MGP_AJ_P0092410 Layn protein_coding protein_coding MGP_AJ_T0095268.1 MGP_AJ_G0035397.1 mouse_genomes_project 9 117555481 117559583 - MGP_AJ_P0095268 Myd88 protein_coding protein_coding MGP_AJ_T0095269.1 MGP_AJ_G0035397.1 mouse_genomes_project 9 117555493 117559544 - Myd88 protein_coding retained_intron MGP_AJ_T0095271.1 MGP_AJ_G0035397.1 mouse_genomes_project 9 117559231 117560953 - MGP_AJ_P0095271 Myd88 protein_coding protein_coding MGP_AJ_T0094156.1 MGP_AJ_G0035199.1 mouse_genomes_project 9 103872946 103881758 - Col6a4 protein_coding processed_transcript MGP_AJ_T0094157.1 MGP_AJ_G0035199.1 mouse_genomes_project 9 103873957 103984851 - MGP_AJ_P0094157 Col6a4 protein_coding protein_coding MGP_AJ_T0094158.1 MGP_AJ_G0035199.1 mouse_genomes_project 9 103955596 103958827 - Col6a4 protein_coding processed_transcript MGP_AJ_T0018549.1 MGP_AJ_G0015723.1 mouse_genomes_project 9 75258312 75259821 + Gm19569 processed_transcript lincRNA MGP_AJ_T0018550.1 MGP_AJ_G0015723.1 mouse_genomes_project 9 75258555 75259821 + Gm19569 processed_transcript retained_intron MGP_AJ_T0094540.1 MGP_AJ_G0035260.1 mouse_genomes_project 9 105906568 105953901 + MGP_AJ_P0094540 Ip6k1 protein_coding protein_coding MGP_AJ_T0094541.1 MGP_AJ_G0035260.1 mouse_genomes_project 9 105906696 105949967 + MGP_AJ_P0094541 Ip6k1 protein_coding nonsense_mediated_decay MGP_AJ_T0094542.1 MGP_AJ_G0035260.1 mouse_genomes_project 9 105906701 105950830 + Ip6k1 protein_coding processed_transcript MGP_AJ_T0094543.1 MGP_AJ_G0035260.1 mouse_genomes_project 9 105906710 105951228 + Ip6k1 protein_coding retained_intron MGP_AJ_T0094544.1 MGP_AJ_G0035260.1 mouse_genomes_project 9 105906713 105938473 + MGP_AJ_P0094544 Ip6k1 protein_coding protein_coding MGP_AJ_T0094545.1 MGP_AJ_G0035260.1 mouse_genomes_project 9 105906738 105945638 + MGP_AJ_P0094545 Ip6k1 protein_coding protein_coding MGP_AJ_T0094546.1 MGP_AJ_G0035260.1 mouse_genomes_project 9 105928905 105950726 + MGP_AJ_P0094546 Ip6k1 protein_coding nonsense_mediated_decay MGP_AJ_T0094547.1 MGP_AJ_G0035260.1 mouse_genomes_project 9 105928937 105936871 + Ip6k1 protein_coding processed_transcript MGP_AJ_T0094548.1 MGP_AJ_G0035260.1 mouse_genomes_project 9 105936839 105951262 + MGP_AJ_P0094548 Ip6k1 protein_coding protein_coding MGP_AJ_T0094549.1 MGP_AJ_G0035260.1 mouse_genomes_project 9 105949982 105950658 + MGP_AJ_P0094549 Ip6k1 protein_coding protein_coding MGP_AJ_T0095249.1 MGP_AJ_G0035391.1 mouse_genomes_project 9 117319009 117341815 + Dlec1 protein_coding retained_intron MGP_AJ_T0095250.1 MGP_AJ_G0035391.1 mouse_genomes_project 9 117319009 117364763 + MGP_AJ_P0095250 Dlec1 protein_coding protein_coding MGP_AJ_T0095251.1 MGP_AJ_G0035391.1 mouse_genomes_project 9 117319009 117364211 + MGP_AJ_P0095251 Dlec1 protein_coding protein_coding MGP_AJ_T0095252.1 MGP_AJ_G0035391.1 mouse_genomes_project 9 117319040 117351209 + MGP_AJ_P0095252 Dlec1 protein_coding nonsense_mediated_decay MGP_AJ_T0095253.1 MGP_AJ_G0035391.1 mouse_genomes_project 9 117336185 117360797 + Dlec1 protein_coding retained_intron MGP_AJ_T0095254.1 MGP_AJ_G0035391.1 mouse_genomes_project 9 117343531 117344750 + Dlec1 protein_coding retained_intron MGP_AJ_T0095255.1 MGP_AJ_G0035391.1 mouse_genomes_project 9 117344886 117351207 + Dlec1 protein_coding retained_intron MGP_AJ_T0095256.1 MGP_AJ_G0035391.1 mouse_genomes_project 9 117345037 117346757 + Dlec1 protein_coding retained_intron MGP_AJ_T0094099.1 MGP_AJ_G0035191.1 mouse_genomes_project 9 103002146 103004543 - MGP_AJ_P0094099 Nudt16 protein_coding protein_coding MGP_AJ_T0094100.1 MGP_AJ_G0035191.1 mouse_genomes_project 9 103002575 103005036 - MGP_AJ_P0094100 Nudt16 protein_coding protein_coding MGP_AJ_T0094101.1 MGP_AJ_G0035191.1 mouse_genomes_project 9 103002903 103005011 - Nudt16 protein_coding retained_intron MGP_AJ_T0094102.1 MGP_AJ_G0035191.1 mouse_genomes_project 9 103002903 103005011 - Nudt16 protein_coding retained_intron MGP_AJ_T0094103.1 MGP_AJ_G0035191.1 mouse_genomes_project 9 103003437 103005004 - MGP_AJ_P0094103 Nudt16 protein_coding protein_coding MGP_AJ_T0091669.1 MGP_AJ_G0034494.1 mouse_genomes_project 9 28054188 28097540 - MGP_AJ_P0091669 St14 protein_coding protein_coding MGP_AJ_T0091670.1 MGP_AJ_G0034494.1 mouse_genomes_project 9 28065243 28097483 - St14 protein_coding retained_intron MGP_AJ_T0091671.1 MGP_AJ_G0034494.1 mouse_genomes_project 9 28065843 28068760 - St14 protein_coding retained_intron MGP_AJ_T0091672.1 MGP_AJ_G0034494.1 mouse_genomes_project 9 28071977 28097483 - MGP_AJ_P0091672 St14 protein_coding nonsense_mediated_decay MGP_AJ_T0091914.1 MGP_AJ_G0034592.1 mouse_genomes_project 9 35922659 35925928 + MGP_AJ_P0091914 Olfr921 protein_coding protein_coding MGP_AJ_T0092568.1 MGP_AJ_G0034834.1 mouse_genomes_project 9 54218646 54253420 + MGP_AJ_P0092568 Cspg4 protein_coding protein_coding MGP_AJ_T0100296.1 MGP_AJ_G0038262.1 mouse_genomes_project 9 86290290 86290406 - Gm22985 snRNA snRNA MGP_AJ_T0009213.1 MGP_AJ_G0007400.1 mouse_genomes_project 9 17293139 17426988 + lincRNA lincRNA MGP_AJ_T0092376.1 MGP_AJ_G0034772.1 mouse_genomes_project 9 48155436 48159863 + Fdxacb1 protein_coding retained_intron MGP_AJ_T0092377.1 MGP_AJ_G0034772.1 mouse_genomes_project 9 48155449 48158785 + MGP_AJ_P0092377 Fdxacb1 protein_coding nonsense_mediated_decay MGP_AJ_T0092378.1 MGP_AJ_G0034772.1 mouse_genomes_project 9 48155458 48159801 + MGP_AJ_P0092378 Fdxacb1 protein_coding protein_coding MGP_AJ_T0092380.1 MGP_AJ_G0034772.1 mouse_genomes_project 9 48157256 48158731 + MGP_AJ_P0092380 Fdxacb1 protein_coding protein_coding MGP_AJ_T0011034.1 MGP_AJ_G0009156.1 mouse_genomes_project 9 6660438 6660539 - Gm26195 miRNA miRNA MGP_AJ_T0005442.1 MGP_AJ_G0004608.1 mouse_genomes_project 9 49219757 49259919 - Arhgap20os antisense antisense MGP_AJ_T0005443.1 MGP_AJ_G0004608.1 mouse_genomes_project 9 49226449 49259806 - Arhgap20os antisense antisense MGP_AJ_T0005444.1 MGP_AJ_G0004608.1 mouse_genomes_project 9 49226457 49259918 - Arhgap20os antisense antisense MGP_AJ_T0005445.1 MGP_AJ_G0004608.1 mouse_genomes_project 9 49227314 49259791 - Arhgap20os antisense antisense MGP_AJ_T0092123.1 MGP_AJ_G0034696.1 mouse_genomes_project 9 41976482 41989776 + MGP_AJ_P0092123 Treh protein_coding protein_coding MGP_AJ_T0092124.1 MGP_AJ_G0034696.1 mouse_genomes_project 9 41976484 41989775 + MGP_AJ_P0092124 Treh protein_coding nonsense_mediated_decay MGP_AJ_T0092125.1 MGP_AJ_G0034696.1 mouse_genomes_project 9 41976498 41989776 + MGP_AJ_P0092125 Treh protein_coding protein_coding MGP_AJ_T0092126.1 MGP_AJ_G0034696.1 mouse_genomes_project 9 41986766 41989487 + MGP_AJ_P0092126 Treh protein_coding nonsense_mediated_decay MGP_AJ_T0091892.1 MGP_AJ_G0034576.1 mouse_genomes_project 9 35554927 35555983 + MGP_AJ_P0091892 Olfr902 protein_coding protein_coding MGP_AJ_T0101577.1 MGP_AJ_G0039543.1 mouse_genomes_project 9 79983678 79983809 + Gm23748 snoRNA snoRNA MGP_AJ_T0101585.1 MGP_AJ_G0039551.1 mouse_genomes_project 9 95242353 95242480 - Gm25607 snoRNA snoRNA MGP_AJ_T0091360.1 MGP_AJ_G0034362.1 mouse_genomes_project 9 15845242 15857794 - MGP_AJ_P0091360 protein_coding protein_coding MGP_AJ_T0011093.1 MGP_AJ_G0009215.1 mouse_genomes_project 9 106008618 106008736 - miRNA miRNA MGP_AJ_T0016168.1 MGP_AJ_G0014263.1 mouse_genomes_project 9 102195475 102196190 - processed_pseudogene processed_pseudogene MGP_AJ_T0092744.1 MGP_AJ_G0034887.1 mouse_genomes_project 9 57222863 57413387 + MGP_AJ_P0092744 Myo9a protein_coding protein_coding MGP_AJ_T0092745.1 MGP_AJ_G0034887.1 mouse_genomes_project 9 57222863 57413387 + MGP_AJ_P0092745 Myo9a protein_coding protein_coding MGP_AJ_T0092746.1 MGP_AJ_G0034887.1 mouse_genomes_project 9 57222863 57413387 + MGP_AJ_P0092746 Myo9a protein_coding protein_coding MGP_AJ_T0092747.1 MGP_AJ_G0034887.1 mouse_genomes_project 9 57354256 57367754 + Myo9a protein_coding processed_transcript MGP_AJ_T0092748.1 MGP_AJ_G0034887.1 mouse_genomes_project 9 57378857 57388601 + Myo9a protein_coding retained_intron MGP_AJ_T0092749.1 MGP_AJ_G0034887.1 mouse_genomes_project 9 57388173 57393199 + Myo9a protein_coding retained_intron MGP_AJ_T0092750.1 MGP_AJ_G0034887.1 mouse_genomes_project 9 57389426 57395122 + Myo9a protein_coding retained_intron MGP_AJ_T0092751.1 MGP_AJ_G0034887.1 mouse_genomes_project 9 57392446 57393489 + Myo9a protein_coding retained_intron MGP_AJ_T0098755.1 MGP_AJ_G0036739.1 mouse_genomes_project 9 71712060 71712179 + n-R5s86 rRNA rRNA MGP_AJ_T0018588.1 MGP_AJ_G0015739.1 mouse_genomes_project 9 109056349 109075452 + Gm10030 processed_transcript antisense MGP_AJ_T0018589.1 MGP_AJ_G0015739.1 mouse_genomes_project 9 109067803 109073948 + Gm10030 processed_transcript retained_intron MGP_AJ_T0018590.1 MGP_AJ_G0015739.1 mouse_genomes_project 9 109072233 109074253 + Gm10030 processed_transcript processed_transcript MGP_AJ_T0095174.1 MGP_AJ_G0035366.1 mouse_genomes_project 9 112557926 112631968 + MGP_AJ_P0095174 Glb1 protein_coding protein_coding MGP_AJ_T0092514.1 MGP_AJ_G0034820.1 mouse_genomes_project 9 52547798 52564351 + MGP_AJ_P0092514 protein_coding protein_coding MGP_AJ_T0092515.1 MGP_AJ_G0034820.1 mouse_genomes_project 9 52547859 52564349 + MGP_AJ_P0092515 protein_coding nonsense_mediated_decay MGP_AJ_T0092516.1 MGP_AJ_G0034820.1 mouse_genomes_project 9 52547861 52564342 + MGP_AJ_P0092516 protein_coding nonsense_mediated_decay MGP_AJ_T0092517.1 MGP_AJ_G0034820.1 mouse_genomes_project 9 52548063 52564349 + MGP_AJ_P0092517 protein_coding protein_coding MGP_AJ_T0092518.1 MGP_AJ_G0034820.1 mouse_genomes_project 9 52552536 52559919 + MGP_AJ_P0092518 protein_coding protein_coding MGP_AJ_T0016109.1 MGP_AJ_G0014204.1 mouse_genomes_project 9 78781208 78782080 - processed_pseudogene processed_pseudogene MGP_AJ_T0009277.1 MGP_AJ_G0007454.1 mouse_genomes_project 9 72500284 72502759 - Gm28182 lincRNA lincRNA MGP_AJ_T0009323.1 MGP_AJ_G0007490.1 mouse_genomes_project 9 99179236 99185023 + Gm28979 lincRNA lincRNA MGP_AJ_T0094427.1 MGP_AJ_G0035246.1 mouse_genomes_project 9 105573615 105578643 - MGP_AJ_P0094427 Gnat1 protein_coding protein_coding MGP_AJ_T0094428.1 MGP_AJ_G0035246.1 mouse_genomes_project 9 105573618 105578565 - Gnat1 protein_coding retained_intron MGP_AJ_T0094429.1 MGP_AJ_G0035246.1 mouse_genomes_project 9 105574438 105575583 - Gnat1 protein_coding retained_intron MGP_AJ_T0094430.1 MGP_AJ_G0035246.1 mouse_genomes_project 9 105575386 105577355 - Gnat1 protein_coding processed_transcript MGP_AJ_T0094431.1 MGP_AJ_G0035246.1 mouse_genomes_project 9 105576072 105578545 - Gnat1 protein_coding retained_intron MGP_AJ_T0095406.1 MGP_AJ_G0035441.1 mouse_genomes_project 9 120551764 120583041 + MGP_AJ_P0095406 Abhd5 protein_coding protein_coding MGP_AJ_T0095407.1 MGP_AJ_G0035441.1 mouse_genomes_project 9 120551886 120583041 + MGP_AJ_P0095407 Abhd5 protein_coding protein_coding MGP_AJ_T0095408.1 MGP_AJ_G0035441.1 mouse_genomes_project 9 120551886 120581342 + MGP_AJ_P0095408 Abhd5 protein_coding nonsense_mediated_decay MGP_AJ_T0095409.1 MGP_AJ_G0035441.1 mouse_genomes_project 9 120551888 120559409 + Abhd5 protein_coding processed_transcript MGP_AJ_T0095410.1 MGP_AJ_G0035441.1 mouse_genomes_project 9 120551888 120579449 + MGP_AJ_P0095410 Abhd5 protein_coding nonsense_mediated_decay MGP_AJ_T0095411.1 MGP_AJ_G0035441.1 mouse_genomes_project 9 120565175 120569784 + MGP_AJ_P0095411 Abhd5 protein_coding protein_coding MGP_AJ_T0016113.1 MGP_AJ_G0014208.1 mouse_genomes_project 9 81234559 81234947 + processed_pseudogene processed_pseudogene MGP_AJ_T0092189.1 MGP_AJ_G0034711.1 mouse_genomes_project 9 42432665 42461909 - MGP_AJ_P0092189 Gm10684 protein_coding protein_coding MGP_AJ_T0092305.1 MGP_AJ_G0034748.1 mouse_genomes_project 9 46367491 46428784 + MGP_AJ_P0092305 Usp28 protein_coding protein_coding MGP_AJ_T0092306.1 MGP_AJ_G0034748.1 mouse_genomes_project 9 46367587 46428781 + MGP_AJ_P0092306 Usp28 protein_coding unknown_likely_coding MGP_AJ_T0002445.1 MGP_AJ_G0002354.1 mouse_genomes_project 9 101386926 101389068 - TEC TEC MGP_AJ_T0094587.1 MGP_AJ_G0035267.1 mouse_genomes_project 9 106110442 106172108 - MGP_AJ_P0094587 Dag1 protein_coding protein_coding MGP_AJ_T0094588.1 MGP_AJ_G0035267.1 mouse_genomes_project 9 106111752 106171965 - MGP_AJ_P0094588 Dag1 protein_coding protein_coding MGP_AJ_T0094589.1 MGP_AJ_G0035267.1 mouse_genomes_project 9 106111763 106172068 - MGP_AJ_P0094589 Dag1 protein_coding protein_coding MGP_AJ_T0094590.1 MGP_AJ_G0035267.1 mouse_genomes_project 9 106111766 106171886 - MGP_AJ_P0094590 Dag1 protein_coding protein_coding MGP_AJ_T0094591.1 MGP_AJ_G0035267.1 mouse_genomes_project 9 106123985 106171901 - MGP_AJ_P0094591 Dag1 protein_coding protein_coding MGP_AJ_T0094592.1 MGP_AJ_G0035267.1 mouse_genomes_project 9 106124023 106171859 - MGP_AJ_P0094592 Dag1 protein_coding protein_coding MGP_AJ_T0094593.1 MGP_AJ_G0035267.1 mouse_genomes_project 9 106159827 106171901 - Dag1 protein_coding retained_intron MGP_AJ_T0095259.1 MGP_AJ_G0035394.1 mouse_genomes_project 9 117386833 117407456 - MGP_AJ_P0095259 Slc22a14 protein_coding protein_coding MGP_AJ_T0095260.1 MGP_AJ_G0035394.1 mouse_genomes_project 9 117386834 117585465 - MGP_AJ_P0095260 Slc22a14 protein_coding protein_coding MGP_AJ_T0095261.1 MGP_AJ_G0035394.1 mouse_genomes_project 9 117387046 117391007 - MGP_AJ_P0095261 Slc22a14 protein_coding protein_coding MGP_AJ_T0095262.1 MGP_AJ_G0035394.1 mouse_genomes_project 9 117398323 117407411 - MGP_AJ_P0095262 Slc22a14 protein_coding protein_coding MGP_AJ_T0095228.1 MGP_AJ_G0035387.1 mouse_genomes_project 9 116812905 117117972 + MGP_AJ_P0095228 Itga9 protein_coding protein_coding MGP_AJ_T0095229.1 MGP_AJ_G0035387.1 mouse_genomes_project 9 116895589 117022080 + Itga9 protein_coding processed_transcript MGP_AJ_T0095230.1 MGP_AJ_G0035387.1 mouse_genomes_project 9 116924848 117114327 + MGP_AJ_P0095230 Itga9 protein_coding protein_coding MGP_AJ_T0095231.1 MGP_AJ_G0035387.1 mouse_genomes_project 9 117022132 117059579 + MGP_AJ_P0095231 Itga9 protein_coding protein_coding MGP_AJ_T0095232.1 MGP_AJ_G0035387.1 mouse_genomes_project 9 117055358 117087660 + Itga9 protein_coding processed_transcript MGP_AJ_T0095233.1 MGP_AJ_G0035387.1 mouse_genomes_project 9 117087788 117113916 + Itga9 protein_coding processed_transcript MGP_AJ_T0091772.1 MGP_AJ_G0034520.1 mouse_genomes_project 9 32643900 32646192 - MGP_AJ_P0091772 Pate1 protein_coding protein_coding MGP_AJ_T0091773.1 MGP_AJ_G0034520.1 mouse_genomes_project 9 32644246 32646211 - Pate1 protein_coding retained_intron MGP_AJ_T0093864.1 MGP_AJ_G0035142.1 mouse_genomes_project 9 96705082 96706586 + MGP_AJ_P0093864 7420426K07Rik protein_coding protein_coding MGP_AJ_T0093135.1 MGP_AJ_G0034986.1 mouse_genomes_project 9 68432505 68567284 - MGP_AJ_P0093135 Lipc protein_coding protein_coding MGP_AJ_T0093136.1 MGP_AJ_G0034986.1 mouse_genomes_project 9 68432643 68466608 - MGP_AJ_P0093136 Lipc protein_coding unknown_likely_coding MGP_AJ_T0093137.1 MGP_AJ_G0034986.1 mouse_genomes_project 9 68432643 68485775 - MGP_AJ_P0093137 Lipc protein_coding unknown_likely_coding MGP_AJ_T0093138.1 MGP_AJ_G0034986.1 mouse_genomes_project 9 68432643 68458519 - MGP_AJ_P0093138 Lipc protein_coding unknown_likely_coding MGP_AJ_T0092102.1 MGP_AJ_G0034683.1 mouse_genomes_project 9 41629143 41630527 + MGP_AJ_P0092102 H2afx protein_coding protein_coding MGP_AJ_T0094141.1 MGP_AJ_G0035196.1 mouse_genomes_project 9 103511450 103552039 + Pik3r4 protein_coding retained_intron MGP_AJ_T0094142.1 MGP_AJ_G0035196.1 mouse_genomes_project 9 103511453 103513226 + MGP_AJ_P0094142 Pik3r4 protein_coding protein_coding MGP_AJ_T0094143.1 MGP_AJ_G0035196.1 mouse_genomes_project 9 103511480 103525877 + Pik3r4 protein_coding retained_intron MGP_AJ_T0094144.1 MGP_AJ_G0035196.1 mouse_genomes_project 9 103511487 103534022 + Pik3r4 protein_coding retained_intron MGP_AJ_T0094145.1 MGP_AJ_G0035196.1 mouse_genomes_project 9 103511502 103560441 + MGP_AJ_P0094145 Pik3r4 protein_coding protein_coding MGP_AJ_T0094146.1 MGP_AJ_G0035196.1 mouse_genomes_project 9 103511636 103560566 + MGP_AJ_P0094146 Pik3r4 protein_coding protein_coding MGP_AJ_T0094147.1 MGP_AJ_G0035196.1 mouse_genomes_project 9 103511667 103517274 + MGP_AJ_P0094147 Pik3r4 protein_coding protein_coding MGP_AJ_T0094148.1 MGP_AJ_G0035196.1 mouse_genomes_project 9 103528590 103539215 + MGP_AJ_P0094148 Pik3r4 protein_coding protein_coding MGP_AJ_T0094149.1 MGP_AJ_G0035196.1 mouse_genomes_project 9 103531358 103533562 + Pik3r4 protein_coding retained_intron MGP_AJ_T0094150.1 MGP_AJ_G0035196.1 mouse_genomes_project 9 103554603 103559304 + Pik3r4 protein_coding retained_intron MGP_AJ_T0100289.1 MGP_AJ_G0038255.1 mouse_genomes_project 9 70614949 70615056 + Gm23567 snRNA snRNA MGP_AJ_T0093871.1 MGP_AJ_G0035146.1 mouse_genomes_project 9 96842069 96948558 - MGP_AJ_P0093871 Pik3cb protein_coding protein_coding MGP_AJ_T0093872.1 MGP_AJ_G0035146.1 mouse_genomes_project 9 96843816 96948396 - MGP_AJ_P0093872 Pik3cb protein_coding nonsense_mediated_decay MGP_AJ_T0093873.1 MGP_AJ_G0035146.1 mouse_genomes_project 9 96907265 96949092 - MGP_AJ_P0093873 Pik3cb protein_coding protein_coding MGP_AJ_T0091579.1 MGP_AJ_G0034464.1 mouse_genomes_project 9 19324666 19359233 + MGP_AJ_P0091579 9530077C05Rik protein_coding protein_coding MGP_AJ_T0005561.1 MGP_AJ_G0004690.1 mouse_genomes_project 9 120026668 120037497 + Gm17163 antisense antisense MGP_AJ_T0005507.1 MGP_AJ_G0004648.1 mouse_genomes_project 9 94887771 94890978 + Gm16185 antisense antisense MGP_AJ_T0016135.1 MGP_AJ_G0014230.1 mouse_genomes_project 9 90357172 90357320 - processed_pseudogene processed_pseudogene MGP_AJ_T0092447.1 MGP_AJ_G0034794.1 mouse_genomes_project 9 50953992 50984343 - MGP_AJ_P0092447 Acat1 protein_coding protein_coding MGP_AJ_T0092448.1 MGP_AJ_G0034794.1 mouse_genomes_project 9 50955957 50957228 - Acat1 protein_coding processed_transcript MGP_AJ_T0092449.1 MGP_AJ_G0034794.1 mouse_genomes_project 9 50971188 50984291 - Acat1 protein_coding retained_intron MGP_AJ_T0094594.1 MGP_AJ_G0035268.1 mouse_genomes_project 9 106199054 106205148 + MGP_AJ_P0094594 Nicn1 protein_coding protein_coding MGP_AJ_T0094595.1 MGP_AJ_G0035268.1 mouse_genomes_project 9 106199069 106202194 + Nicn1 protein_coding retained_intron MGP_AJ_T0094596.1 MGP_AJ_G0035268.1 mouse_genomes_project 9 106199080 106202162 + Nicn1 protein_coding processed_transcript MGP_AJ_T0094597.1 MGP_AJ_G0035268.1 mouse_genomes_project 9 106202504 106203430 + Nicn1 protein_coding retained_intron MGP_AJ_T0095281.1 MGP_AJ_G0035400.1 mouse_genomes_project 9 117622433 117655699 + MGP_AJ_P0095281 Acvr2b protein_coding protein_coding MGP_AJ_T0095282.1 MGP_AJ_G0035400.1 mouse_genomes_project 9 117622490 117655699 + MGP_AJ_P0095282 Acvr2b protein_coding protein_coding MGP_AJ_T0095283.1 MGP_AJ_G0035400.1 mouse_genomes_project 9 117622535 117655659 + MGP_AJ_P0095283 Acvr2b protein_coding unknown_likely_coding MGP_AJ_T0094039.1 MGP_AJ_G0035179.1 mouse_genomes_project 9 101194215 101203535 - MGP_AJ_P0094039 Cdv3 protein_coding protein_coding MGP_AJ_T0094040.1 MGP_AJ_G0035179.1 mouse_genomes_project 9 101199770 101203147 - Cdv3 protein_coding retained_intron MGP_AJ_T0005469.1 MGP_AJ_G0004624.1 mouse_genomes_project 9 67607039 67608606 - Gm28731 antisense antisense MGP_AJ_T0093477.1 MGP_AJ_G0035061.1 mouse_genomes_project 9 78109989 78242247 - MGP_AJ_P0093477 Impg1 protein_coding protein_coding MGP_AJ_T0093478.1 MGP_AJ_G0035061.1 mouse_genomes_project 9 78110626 78242290 - MGP_AJ_P0093478 Impg1 protein_coding protein_coding MGP_AJ_T0093479.1 MGP_AJ_G0035061.1 mouse_genomes_project 9 78185742 78242247 - MGP_AJ_P0093479 Impg1 protein_coding protein_coding MGP_AJ_T0091208.1 MGP_AJ_G0034309.1 mouse_genomes_project 9 4916434 4990270 - MGP_AJ_P0091208 Yap1 protein_coding protein_coding MGP_AJ_T0091209.1 MGP_AJ_G0034309.1 mouse_genomes_project 9 4916434 4990278 - MGP_AJ_P0091209 Yap1 protein_coding protein_coding MGP_AJ_T0091210.1 MGP_AJ_G0034309.1 mouse_genomes_project 9 4918932 4990072 - MGP_AJ_P0091210 Yap1 protein_coding nonsense_mediated_decay MGP_AJ_T0091211.1 MGP_AJ_G0034309.1 mouse_genomes_project 9 4918932 4990072 - MGP_AJ_P0091211 Yap1 protein_coding nonsense_mediated_decay MGP_AJ_T0091212.1 MGP_AJ_G0034309.1 mouse_genomes_project 9 4918932 4987385 - MGP_AJ_P0091212 Yap1 protein_coding protein_coding MGP_AJ_T0091213.1 MGP_AJ_G0034309.1 mouse_genomes_project 9 4918932 4990072 - MGP_AJ_P0091213 Yap1 protein_coding nonsense_mediated_decay MGP_AJ_T0091214.1 MGP_AJ_G0034309.1 mouse_genomes_project 9 4947722 4951236 - Yap1 protein_coding processed_transcript MGP_AJ_T0091215.1 MGP_AJ_G0034309.1 mouse_genomes_project 9 4959210 4989439 - Yap1 protein_coding processed_transcript MGP_AJ_T0091216.1 MGP_AJ_G0034309.1 mouse_genomes_project 9 4959252 4989457 - Yap1 protein_coding processed_transcript MGP_AJ_T0091217.1 MGP_AJ_G0034309.1 mouse_genomes_project 9 4982590 4990278 - Yap1 protein_coding retained_intron MGP_AJ_T0091295.1 MGP_AJ_G0034336.1 mouse_genomes_project 9 11793236 11811307 - MGP_AJ_P0091295 Izumo1r protein_coding protein_coding MGP_AJ_T0091296.1 MGP_AJ_G0034336.1 mouse_genomes_project 9 11800471 11811372 - MGP_AJ_P0091296 Izumo1r protein_coding protein_coding MGP_AJ_T0091297.1 MGP_AJ_G0034336.1 mouse_genomes_project 9 11807445 11811355 - MGP_AJ_P0091297 Izumo1r protein_coding protein_coding MGP_AJ_T0091298.1 MGP_AJ_G0034336.1 mouse_genomes_project 9 11807450 11811179 - MGP_AJ_P0091298 Izumo1r protein_coding protein_coding MGP_AJ_T0091299.1 MGP_AJ_G0034336.1 mouse_genomes_project 9 11808192 11811177 - MGP_AJ_P0091299 Izumo1r protein_coding protein_coding MGP_AJ_T0002433.1 MGP_AJ_G0002342.1 mouse_genomes_project 9 98993860 98995744 + TEC TEC MGP_AJ_T0093403.1 MGP_AJ_G0035040.1 mouse_genomes_project 9 75916882 75934362 + MGP_AJ_P0093403 Gsta4 protein_coding protein_coding MGP_AJ_T0100274.1 MGP_AJ_G0038240.1 mouse_genomes_project 9 60637786 60637893 + Gm25064 snRNA snRNA MGP_AJ_T0094029.1 MGP_AJ_G0035178.1 mouse_genomes_project 9 101143087 101188414 + MGP_AJ_P0094029 Topbp1 protein_coding protein_coding MGP_AJ_T0094030.1 MGP_AJ_G0035178.1 mouse_genomes_project 9 101143103 101143873 + Topbp1 protein_coding retained_intron MGP_AJ_T0094031.1 MGP_AJ_G0035178.1 mouse_genomes_project 9 101143375 101149416 + MGP_AJ_P0094031 Topbp1 protein_coding protein_coding MGP_AJ_T0094032.1 MGP_AJ_G0035178.1 mouse_genomes_project 9 101165629 101175223 + Topbp1 protein_coding retained_intron MGP_AJ_T0094033.1 MGP_AJ_G0035178.1 mouse_genomes_project 9 101165655 101167457 + Topbp1 protein_coding retained_intron MGP_AJ_T0094034.1 MGP_AJ_G0035178.1 mouse_genomes_project 9 101170551 101180019 + MGP_AJ_P0094034 Topbp1 protein_coding protein_coding MGP_AJ_T0094035.1 MGP_AJ_G0035178.1 mouse_genomes_project 9 101181610 101184700 + MGP_AJ_P0094035 Topbp1 protein_coding nonsense_mediated_decay MGP_AJ_T0094036.1 MGP_AJ_G0035178.1 mouse_genomes_project 9 101181912 101182661 + Topbp1 protein_coding retained_intron MGP_AJ_T0094037.1 MGP_AJ_G0035178.1 mouse_genomes_project 9 101183577 101185061 + Topbp1 protein_coding retained_intron MGP_AJ_T0094038.1 MGP_AJ_G0035178.1 mouse_genomes_project 9 101184198 101187887 + Topbp1 protein_coding retained_intron MGP_AJ_T0095162.1 MGP_AJ_G0035362.1 mouse_genomes_project 9 111987676 112037522 + MGP_AJ_P0095162 Ubp1 protein_coding protein_coding MGP_AJ_T0095163.1 MGP_AJ_G0035362.1 mouse_genomes_project 9 111987676 112037522 + MGP_AJ_P0095163 Ubp1 protein_coding protein_coding MGP_AJ_T0095164.1 MGP_AJ_G0035362.1 mouse_genomes_project 9 111988163 112037140 + MGP_AJ_P0095164 Ubp1 protein_coding protein_coding MGP_AJ_T0092643.1 MGP_AJ_G0034861.1 mouse_genomes_project 9 55307468 55326605 + MGP_AJ_P0092643 Ubl7 protein_coding protein_coding MGP_AJ_T0092571.1 MGP_AJ_G0034837.1 mouse_genomes_project 9 54306811 54339794 + MGP_AJ_P0092571 Snupn protein_coding protein_coding MGP_AJ_T0101532.1 MGP_AJ_G0039498.1 mouse_genomes_project 9 12229622 12229753 + Gm24455 snoRNA snoRNA MGP_AJ_T0091465.1 MGP_AJ_G0034419.1 mouse_genomes_project 9 17985635 18012947 - MGP_AJ_P0091465 Tyk2 protein_coding unknown_likely_coding MGP_AJ_T0091466.1 MGP_AJ_G0034419.1 mouse_genomes_project 9 17985640 18009053 - MGP_AJ_P0091466 Tyk2 protein_coding protein_coding MGP_AJ_T0016174.1 MGP_AJ_G0014269.1 mouse_genomes_project 9 106240883 106241247 + processed_pseudogene processed_pseudogene MGP_AJ_T0092424.1 MGP_AJ_G0034784.1 mouse_genomes_project 9 49326771 49347006 - MGP_AJ_P0092424 Fdx1 protein_coding protein_coding MGP_AJ_T0011090.1 MGP_AJ_G0009212.1 mouse_genomes_project 9 104073097 104073185 + Mirlet7g miRNA miRNA MGP_AJ_T0093790.1 MGP_AJ_G0035124.1 mouse_genomes_project 9 94113715 94147314 - MGP_AJ_P0093790 Atp1b3 protein_coding protein_coding MGP_AJ_T0093791.1 MGP_AJ_G0035124.1 mouse_genomes_project 9 94120762 94125667 - Atp1b3 protein_coding retained_intron MGP_AJ_T0093792.1 MGP_AJ_G0035124.1 mouse_genomes_project 9 94128099 94131681 - Atp1b3 protein_coding processed_transcript MGP_AJ_T0094628.1 MGP_AJ_G0035277.1 mouse_genomes_project 9 106359748 106373692 - MGP_AJ_P0094628 Klhdc8b protein_coding protein_coding MGP_AJ_T0094629.1 MGP_AJ_G0035277.1 mouse_genomes_project 9 106359770 106364823 - Klhdc8b protein_coding retained_intron MGP_AJ_T0094630.1 MGP_AJ_G0035277.1 mouse_genomes_project 9 106359770 106362909 - Klhdc8b protein_coding retained_intron MGP_AJ_T0094631.1 MGP_AJ_G0035277.1 mouse_genomes_project 9 106359770 106364482 - MGP_AJ_P0094631 Klhdc8b protein_coding protein_coding MGP_AJ_T0094632.1 MGP_AJ_G0035277.1 mouse_genomes_project 9 106359944 106364509 - MGP_AJ_P0094632 Klhdc8b protein_coding protein_coding MGP_AJ_T0094633.1 MGP_AJ_G0035277.1 mouse_genomes_project 9 106360085 106373187 - MGP_AJ_P0094633 Klhdc8b protein_coding protein_coding MGP_AJ_T0094634.1 MGP_AJ_G0035277.1 mouse_genomes_project 9 106360380 106362474 - Klhdc8b protein_coding processed_transcript MGP_AJ_T0094635.1 MGP_AJ_G0035277.1 mouse_genomes_project 9 106363359 106364871 - Klhdc8b protein_coding processed_transcript MGP_AJ_T0094636.1 MGP_AJ_G0035277.1 mouse_genomes_project 9 106363380 106364906 - Klhdc8b protein_coding retained_intron MGP_AJ_T0094637.1 MGP_AJ_G0035277.1 mouse_genomes_project 9 106364692 106373040 - Klhdc8b protein_coding processed_transcript MGP_AJ_T0094638.1 MGP_AJ_G0035277.1 mouse_genomes_project 9 106366777 106373040 - Klhdc8b protein_coding retained_intron MGP_AJ_T0094639.1 MGP_AJ_G0035277.1 mouse_genomes_project 9 106366779 106369063 - Klhdc8b protein_coding retained_intron MGP_AJ_T0094640.1 MGP_AJ_G0035277.1 mouse_genomes_project 9 106366970 106373184 - Klhdc8b protein_coding processed_transcript MGP_AJ_T0094641.1 MGP_AJ_G0035277.1 mouse_genomes_project 9 106370546 106372189 - Klhdc8b protein_coding retained_intron MGP_AJ_T0094642.1 MGP_AJ_G0035277.1 mouse_genomes_project 9 106371343 106373039 - Klhdc8b protein_coding retained_intron MGP_AJ_T0011750.1 MGP_AJ_G0009872.1 mouse_genomes_project 9 116487334 116487641 + Gm22198 misc_RNA misc_RNA MGP_AJ_T0100291.1 MGP_AJ_G0038257.1 mouse_genomes_project 9 80176388 80176449 - Gm22836 snRNA snRNA MGP_AJ_T0011071.1 MGP_AJ_G0009193.1 mouse_genomes_project 9 62250418 62250525 - miRNA miRNA MGP_AJ_T0091935.1 MGP_AJ_G0034613.1 mouse_genomes_project 9 36652240 36653296 - MGP_AJ_P0091935 protein_coding protein_coding MGP_AJ_T0100286.1 MGP_AJ_G0038252.1 mouse_genomes_project 9 69740010 69740109 - Gm25045 snRNA snRNA MGP_AJ_T0005416.1 MGP_AJ_G0004588.1 mouse_genomes_project 9 17973226 18010100 + 1700084C06Rik antisense antisense MGP_AJ_T0002368.1 MGP_AJ_G0002278.1 mouse_genomes_project 9 69625763 69627414 - TEC TEC MGP_AJ_T0100292.1 MGP_AJ_G0038258.1 mouse_genomes_project 9 80200228 80200325 - Gm24393 snRNA snRNA MGP_AJ_T0002372.1 MGP_AJ_G0002282.1 mouse_genomes_project 9 69990174 69991160 + TEC TEC MGP_AJ_T0016101.1 MGP_AJ_G0014196.1 mouse_genomes_project 9 74694363 74694601 + processed_pseudogene processed_pseudogene MGP_AJ_T0091868.1 MGP_AJ_G0034553.1 mouse_genomes_project 9 34881468 34882516 + MGP_AJ_P0091868 Olfr876 protein_coding protein_coding MGP_AJ_T0101568.1 MGP_AJ_G0039534.1 mouse_genomes_project 9 63501143 63501275 - Gm22657 snoRNA snoRNA MGP_AJ_T0002370.1 MGP_AJ_G0002280.1 mouse_genomes_project 9 69948032 69950033 + TEC TEC MGP_AJ_T0091303.1 MGP_AJ_G0034338.1 mouse_genomes_project 9 11957310 12018702 - MGP_AJ_P0091303 Hephl1 protein_coding protein_coding MGP_AJ_T0093552.1 MGP_AJ_G0035076.1 mouse_genomes_project 9 84239227 84340805 + MGP_AJ_P0093552 Dopey1 protein_coding protein_coding MGP_AJ_T0093553.1 MGP_AJ_G0035076.1 mouse_genomes_project 9 84239243 84280380 + Dopey1 protein_coding retained_intron MGP_AJ_T0093554.1 MGP_AJ_G0035076.1 mouse_genomes_project 9 84239252 84275270 + Dopey1 protein_coding retained_intron MGP_AJ_T0093555.1 MGP_AJ_G0035076.1 mouse_genomes_project 9 84239271 84330311 + MGP_AJ_P0093555 Dopey1 protein_coding unknown_likely_coding MGP_AJ_T0093556.1 MGP_AJ_G0035076.1 mouse_genomes_project 9 84239271 84339203 + MGP_AJ_P0093556 Dopey1 protein_coding unknown_likely_coding MGP_AJ_T0093557.1 MGP_AJ_G0035076.1 mouse_genomes_project 9 84239284 84276394 + Dopey1 protein_coding retained_intron MGP_AJ_T0093558.1 MGP_AJ_G0035076.1 mouse_genomes_project 9 84239284 84285120 + MGP_AJ_P0093558 Dopey1 protein_coding protein_coding MGP_AJ_T0093559.1 MGP_AJ_G0035076.1 mouse_genomes_project 9 84239287 84340686 + MGP_AJ_P0093559 Dopey1 protein_coding nonsense_mediated_decay MGP_AJ_T0093560.1 MGP_AJ_G0035076.1 mouse_genomes_project 9 84257499 84340688 + MGP_AJ_P0093560 Dopey1 protein_coding protein_coding MGP_AJ_T0093561.1 MGP_AJ_G0035076.1 mouse_genomes_project 9 84259356 84262162 + Dopey1 protein_coding retained_intron MGP_AJ_T0093562.1 MGP_AJ_G0035076.1 mouse_genomes_project 9 84261690 84264592 + Dopey1 protein_coding retained_intron MGP_AJ_T0093563.1 MGP_AJ_G0035076.1 mouse_genomes_project 9 84269123 84273094 + Dopey1 protein_coding retained_intron MGP_AJ_T0093564.1 MGP_AJ_G0035076.1 mouse_genomes_project 9 84275740 84279656 + Dopey1 protein_coding retained_intron MGP_AJ_T0093565.1 MGP_AJ_G0035076.1 mouse_genomes_project 9 84276032 84288495 + Dopey1 protein_coding retained_intron MGP_AJ_T0093566.1 MGP_AJ_G0035076.1 mouse_genomes_project 9 84293255 84297201 + MGP_AJ_P0093566 Dopey1 protein_coding protein_coding MGP_AJ_T0093567.1 MGP_AJ_G0035076.1 mouse_genomes_project 9 84295607 84331370 + Dopey1 protein_coding retained_intron MGP_AJ_T0093568.1 MGP_AJ_G0035076.1 mouse_genomes_project 9 84312826 84339507 + Dopey1 protein_coding retained_intron MGP_AJ_T0093569.1 MGP_AJ_G0035076.1 mouse_genomes_project 9 84314253 84339512 + MGP_AJ_P0093569 Dopey1 protein_coding nonsense_mediated_decay MGP_AJ_T0093570.1 MGP_AJ_G0035076.1 mouse_genomes_project 9 84327708 84333997 + Dopey1 protein_coding retained_intron MGP_AJ_T0093571.1 MGP_AJ_G0035076.1 mouse_genomes_project 9 84334496 84339512 + Dopey1 protein_coding retained_intron MGP_AJ_T0092122.1 MGP_AJ_G0034695.1 mouse_genomes_project 9 41901567 41937510 + MGP_AJ_P0092122 Ddx6 protein_coding unknown_likely_coding MGP_AJ_T0093831.1 MGP_AJ_G0035131.1 mouse_genomes_project 9 94876528 94914072 - MGP_AJ_P0093831 Slc25a36 protein_coding protein_coding MGP_AJ_T0093832.1 MGP_AJ_G0035131.1 mouse_genomes_project 9 94877132 94886916 - MGP_AJ_P0093832 Slc25a36 protein_coding protein_coding MGP_AJ_T0093833.1 MGP_AJ_G0035131.1 mouse_genomes_project 9 94880484 94913922 - MGP_AJ_P0093833 Slc25a36 protein_coding nonsense_mediated_decay MGP_AJ_T0093834.1 MGP_AJ_G0035131.1 mouse_genomes_project 9 94880770 94887707 - Slc25a36 protein_coding retained_intron MGP_AJ_T0093835.1 MGP_AJ_G0035131.1 mouse_genomes_project 9 94882556 94892396 - Slc25a36 protein_coding processed_transcript MGP_AJ_T0093836.1 MGP_AJ_G0035131.1 mouse_genomes_project 9 94882722 94892513 - Slc25a36 protein_coding processed_transcript MGP_AJ_T0093837.1 MGP_AJ_G0035131.1 mouse_genomes_project 9 94892069 94902590 - MGP_AJ_P0093837 Slc25a36 protein_coding protein_coding MGP_AJ_T0093838.1 MGP_AJ_G0035131.1 mouse_genomes_project 9 94895182 94913902 - Slc25a36 protein_coding retained_intron MGP_AJ_T0093839.1 MGP_AJ_G0035131.1 mouse_genomes_project 9 94901672 94913948 - Slc25a36 protein_coding retained_intron MGP_AJ_T0005558.1 MGP_AJ_G0004688.1 mouse_genomes_project 9 119148521 119154907 - 4930593C16Rik antisense antisense MGP_AJ_T0011064.1 MGP_AJ_G0009186.1 mouse_genomes_project 9 49500704 49500821 + Mir6244 miRNA miRNA MGP_AJ_T0092839.1 MGP_AJ_G0034908.1 mouse_genomes_project 9 60668283 60885094 - MGP_AJ_P0092839 Map2k5 protein_coding protein_coding MGP_AJ_T0091919.1 MGP_AJ_G0034597.1 mouse_genomes_project 9 36035602 36036998 + MGP_AJ_P0091919 Olfr926 protein_coding protein_coding MGP_AJ_T0092904.1 MGP_AJ_G0034923.1 mouse_genomes_project 9 62240305 62261509 - MGP_AJ_P0092904 Rab11a protein_coding protein_coding MGP_AJ_T0092905.1 MGP_AJ_G0034923.1 mouse_genomes_project 9 62240407 62249515 - Rab11a protein_coding retained_intron MGP_AJ_T0092906.1 MGP_AJ_G0034923.1 mouse_genomes_project 9 62240508 62250505 - MGP_AJ_P0092906 Rab11a protein_coding protein_coding MGP_AJ_T0092907.1 MGP_AJ_G0034923.1 mouse_genomes_project 9 62240572 62250248 - Rab11a protein_coding processed_transcript MGP_AJ_T0092908.1 MGP_AJ_G0034923.1 mouse_genomes_project 9 62240651 62261390 - MGP_AJ_P0092908 Rab11a protein_coding protein_coding MGP_AJ_T0092909.1 MGP_AJ_G0034923.1 mouse_genomes_project 9 62240745 62261390 - MGP_AJ_P0092909 Rab11a protein_coding protein_coding MGP_AJ_T0092910.1 MGP_AJ_G0034923.1 mouse_genomes_project 9 62240755 62261519 - MGP_AJ_P0092910 Rab11a protein_coding protein_coding MGP_AJ_T0092911.1 MGP_AJ_G0034923.1 mouse_genomes_project 9 62250485 62260277 - Rab11a protein_coding processed_transcript MGP_AJ_T0091345.1 MGP_AJ_G0034352.1 mouse_genomes_project 9 15301501 15308588 + MGP_AJ_P0091345 Ubtfl1 protein_coding protein_coding MGP_AJ_T0091346.1 MGP_AJ_G0034352.1 mouse_genomes_project 9 15301503 15308412 + MGP_AJ_P0091346 Ubtfl1 protein_coding protein_coding MGP_AJ_T0091347.1 MGP_AJ_G0034352.1 mouse_genomes_project 9 15306180 15307829 + MGP_AJ_P0091347 Ubtfl1 protein_coding protein_coding MGP_AJ_T0009337.1 MGP_AJ_G0007502.1 mouse_genomes_project 9 106483765 106485407 + 4833445I07Rik lincRNA lincRNA MGP_AJ_T0009338.1 MGP_AJ_G0007502.1 mouse_genomes_project 9 106484125 106485007 + 4833445I07Rik lincRNA lincRNA MGP_AJ_T0095107.1 MGP_AJ_G0035354.1 mouse_genomes_project 9 109388140 109470758 + MGP_AJ_P0095107 Trank1 protein_coding protein_coding MGP_AJ_T0095108.1 MGP_AJ_G0035354.1 mouse_genomes_project 9 109388341 109432744 + Trank1 protein_coding processed_transcript MGP_AJ_T0095109.1 MGP_AJ_G0035354.1 mouse_genomes_project 9 109388497 109420281 + MGP_AJ_P0095109 Trank1 protein_coding protein_coding MGP_AJ_T0095110.1 MGP_AJ_G0035354.1 mouse_genomes_project 9 109388630 109460490 + MGP_AJ_P0095110 Trank1 protein_coding unknown_likely_coding MGP_AJ_T0095111.1 MGP_AJ_G0035354.1 mouse_genomes_project 9 109449796 109470758 + Trank1 protein_coding processed_transcript MGP_AJ_T0095112.1 MGP_AJ_G0035354.1 mouse_genomes_project 9 109449859 109464224 + Trank1 protein_coding processed_transcript MGP_AJ_T0095113.1 MGP_AJ_G0035354.1 mouse_genomes_project 9 109449864 109460330 + Trank1 protein_coding processed_transcript MGP_AJ_T0095114.1 MGP_AJ_G0035354.1 mouse_genomes_project 9 109461331 109465142 + Trank1 protein_coding retained_intron MGP_AJ_T0094598.1 MGP_AJ_G0035269.1 mouse_genomes_project 9 106205502 106210169 + Amt protein_coding processed_transcript MGP_AJ_T0094599.1 MGP_AJ_G0035269.1 mouse_genomes_project 9 106205519 106210973 + MGP_AJ_P0094599 Amt protein_coding protein_coding MGP_AJ_T0094600.1 MGP_AJ_G0035269.1 mouse_genomes_project 9 106205559 106206181 + Amt protein_coding retained_intron MGP_AJ_T0094601.1 MGP_AJ_G0035269.1 mouse_genomes_project 9 106205571 106208088 + Amt protein_coding retained_intron MGP_AJ_T0091457.1 MGP_AJ_G0034411.1 mouse_genomes_project 9 17841903 17852814 - MGP_AJ_P0091457 S1pr2 protein_coding protein_coding MGP_AJ_T0092437.1 MGP_AJ_G0034791.1 mouse_genomes_project 9 50777701 50805467 + MGP_AJ_P0092437 4930550C14Rik protein_coding protein_coding MGP_AJ_T0093161.1 MGP_AJ_G0034992.1 mouse_genomes_project 9 69239044 69389433 - MGP_AJ_P0093161 Cgnl1 protein_coding protein_coding MGP_AJ_T0093162.1 MGP_AJ_G0034992.1 mouse_genomes_project 9 69239044 69389433 - MGP_AJ_P0093162 Cgnl1 protein_coding protein_coding MGP_AJ_T0093163.1 MGP_AJ_G0034992.1 mouse_genomes_project 9 69241393 69243650 - Cgnl1 protein_coding retained_intron MGP_AJ_T0093164.1 MGP_AJ_G0034992.1 mouse_genomes_project 9 69241745 69389391 - MGP_AJ_P0093164 Cgnl1 protein_coding protein_coding MGP_AJ_T0093165.1 MGP_AJ_G0034992.1 mouse_genomes_project 9 69242876 69243871 - Cgnl1 protein_coding retained_intron MGP_AJ_T0093166.1 MGP_AJ_G0034992.1 mouse_genomes_project 9 69245144 69260890 - Cgnl1 protein_coding processed_transcript MGP_AJ_T0095197.1 MGP_AJ_G0035379.1 mouse_genomes_project 9 114102466 114246808 + MGP_AJ_P0095197 Gadl1 protein_coding protein_coding MGP_AJ_T0091331.1 MGP_AJ_G0034346.1 mouse_genomes_project 9 12627274 12659467 + MGP_AJ_P0091331 Slc36a4 protein_coding protein_coding MGP_AJ_T0100287.1 MGP_AJ_G0038253.1 mouse_genomes_project 9 69887583 69887687 - Gm25163 snRNA snRNA MGP_AJ_T0093150.1 MGP_AJ_G0034989.1 mouse_genomes_project 9 69085295 69092627 - MGP_AJ_P0093150 Polr2m protein_coding protein_coding MGP_AJ_T0093155.1 MGP_AJ_G0034989.1 mouse_genomes_project 9 69088304 69092741 - MGP_AJ_P0093155 Polr2m protein_coding nonsense_mediated_decay MGP_AJ_T0011102.1 MGP_AJ_G0009224.1 mouse_genomes_project 9 108991635 108991712 + Gm24269 miRNA miRNA MGP_AJ_T0016077.1 MGP_AJ_G0014172.1 mouse_genomes_project 9 63389909 63390426 + processed_pseudogene processed_pseudogene MGP_AJ_T0009283.1 MGP_AJ_G0007459.1 mouse_genomes_project 9 77016254 77016693 + Gm28620 lincRNA lincRNA MGP_AJ_T0095391.1 MGP_AJ_G0035435.1 mouse_genomes_project 9 120124295 120126245 - MGP_AJ_P0095391 Cyp8b1 protein_coding protein_coding MGP_AJ_T0091782.1 MGP_AJ_G0034529.1 mouse_genomes_project 9 33561534 33573792 - MGP_AJ_P0091782 Gm5615 protein_coding protein_coding MGP_AJ_T0091374.1 MGP_AJ_G0034376.1 mouse_genomes_project 9 16461417 16462365 - MGP_AJ_P0091374 Olfr854 protein_coding protein_coding MGP_AJ_T0093275.1 MGP_AJ_G0035007.1 mouse_genomes_project 9 70747682 70748734 + MGP_AJ_P0093275 Khdc3 protein_coding protein_coding MGP_AJ_T0093276.1 MGP_AJ_G0035007.1 mouse_genomes_project 9 70748244 70750285 + MGP_AJ_P0093276 Khdc3 protein_coding protein_coding MGP_AJ_T0093277.1 MGP_AJ_G0035007.1 mouse_genomes_project 9 70748244 70750285 + MGP_AJ_P0093277 Khdc3 protein_coding protein_coding MGP_AJ_T0093279.1 MGP_AJ_G0035007.1 mouse_genomes_project 9 70748356 70750039 + MGP_AJ_P0093279 Khdc3 protein_coding protein_coding MGP_AJ_T0009332.1 MGP_AJ_G0007498.1 mouse_genomes_project 9 105134079 105136866 + 1700039M15Rik lincRNA lincRNA MGP_AJ_T0095301.1 MGP_AJ_G0035410.1 mouse_genomes_project 9 118233245 118243080 - MGP_AJ_P0095301 Xirp1 protein_coding protein_coding MGP_AJ_T0005457.1 MGP_AJ_G0004615.1 mouse_genomes_project 9 55436669 55453977 + Gm16130 antisense antisense MGP_AJ_T0094360.1 MGP_AJ_G0035238.1 mouse_genomes_project 9 105464910 105469740 + MGP_AJ_P0094360 Hyal2 protein_coding protein_coding MGP_AJ_T0094361.1 MGP_AJ_G0035238.1 mouse_genomes_project 9 105464910 105467355 + MGP_AJ_P0094361 Hyal2 protein_coding protein_coding MGP_AJ_T0094362.1 MGP_AJ_G0035238.1 mouse_genomes_project 9 105466077 105469737 + MGP_AJ_P0094362 Hyal2 protein_coding protein_coding MGP_AJ_T0094363.1 MGP_AJ_G0035238.1 mouse_genomes_project 9 105466101 105468924 + MGP_AJ_P0094363 Hyal2 protein_coding protein_coding MGP_AJ_T0094364.1 MGP_AJ_G0035238.1 mouse_genomes_project 9 105466355 105467573 + MGP_AJ_P0094364 Hyal2 protein_coding protein_coding MGP_AJ_T0094365.1 MGP_AJ_G0035238.1 mouse_genomes_project 9 105466765 105469733 + MGP_AJ_P0094365 Hyal2 protein_coding protein_coding MGP_AJ_T0094366.1 MGP_AJ_G0035238.1 mouse_genomes_project 9 105468170 105469164 + Hyal2 protein_coding retained_intron MGP_AJ_T0093324.1 MGP_AJ_G0035019.1 mouse_genomes_project 9 73021590 73056327 - protein_coding processed_transcript MGP_AJ_T0093325.1 MGP_AJ_G0035019.1 mouse_genomes_project 9 73054264 73077918 - MGP_AJ_P0093325 protein_coding protein_coding MGP_AJ_T0093326.1 MGP_AJ_G0035019.1 mouse_genomes_project 9 73054266 73078564 - MGP_AJ_P0093326 protein_coding protein_coding MGP_AJ_T0093327.1 MGP_AJ_G0035019.1 mouse_genomes_project 9 73060382 73066278 - protein_coding retained_intron MGP_AJ_T0093328.1 MGP_AJ_G0035019.1 mouse_genomes_project 9 73065552 73078142 - protein_coding processed_transcript MGP_AJ_T0093329.1 MGP_AJ_G0035019.1 mouse_genomes_project 9 73065705 73078544 - protein_coding processed_transcript MGP_AJ_T0095082.1 MGP_AJ_G0035351.1 mouse_genomes_project 9 109188345 109276357 + MGP_AJ_P0095082 Lrrfip2 protein_coding protein_coding MGP_AJ_T0095083.1 MGP_AJ_G0035351.1 mouse_genomes_project 9 109188864 109302763 + MGP_AJ_P0095083 Lrrfip2 protein_coding protein_coding MGP_AJ_T0095084.1 MGP_AJ_G0035351.1 mouse_genomes_project 9 109188866 109301317 + MGP_AJ_P0095084 Lrrfip2 protein_coding protein_coding MGP_AJ_T0095085.1 MGP_AJ_G0035351.1 mouse_genomes_project 9 109188888 109302763 + MGP_AJ_P0095085 Lrrfip2 protein_coding protein_coding MGP_AJ_T0095086.1 MGP_AJ_G0035351.1 mouse_genomes_project 9 109188938 109302765 + MGP_AJ_P0095086 Lrrfip2 protein_coding unknown_likely_coding MGP_AJ_T0095087.1 MGP_AJ_G0035351.1 mouse_genomes_project 9 109189198 109301317 + MGP_AJ_P0095087 Lrrfip2 protein_coding protein_coding MGP_AJ_T0095088.1 MGP_AJ_G0035351.1 mouse_genomes_project 9 109190429 109301317 + MGP_AJ_P0095088 Lrrfip2 protein_coding protein_coding MGP_AJ_T0095090.1 MGP_AJ_G0035351.1 mouse_genomes_project 9 109260677 109291294 + MGP_AJ_P0095090 Lrrfip2 protein_coding protein_coding MGP_AJ_T0095091.1 MGP_AJ_G0035351.1 mouse_genomes_project 9 109268526 109302763 + Lrrfip2 protein_coding processed_transcript MGP_AJ_T0095092.1 MGP_AJ_G0035351.1 mouse_genomes_project 9 109276036 109282430 + Lrrfip2 protein_coding retained_intron MGP_AJ_T0095093.1 MGP_AJ_G0035351.1 mouse_genomes_project 9 109291287 109293604 + Lrrfip2 protein_coding retained_intron MGP_AJ_T0095094.1 MGP_AJ_G0035351.1 mouse_genomes_project 9 109296264 109301048 + Lrrfip2 protein_coding retained_intron MGP_AJ_T0093259.1 MGP_AJ_G0035005.1 mouse_genomes_project 9 70652212 70685445 - MGP_AJ_P0093259 Pigb protein_coding nonsense_mediated_decay MGP_AJ_T0093260.1 MGP_AJ_G0035005.1 mouse_genomes_project 9 70653274 70660451 - MGP_AJ_P0093260 Pigb protein_coding protein_coding MGP_AJ_T0093262.1 MGP_AJ_G0035005.1 mouse_genomes_project 9 70658504 70684766 - MGP_AJ_P0093262 Pigb protein_coding protein_coding MGP_AJ_T0093263.1 MGP_AJ_G0035005.1 mouse_genomes_project 9 70659457 70684718 - MGP_AJ_P0093263 Pigb protein_coding protein_coding MGP_AJ_T0093265.1 MGP_AJ_G0035005.1 mouse_genomes_project 9 70660489 70684766 - MGP_AJ_P0093265 Pigb protein_coding protein_coding MGP_AJ_T0093266.1 MGP_AJ_G0035005.1 mouse_genomes_project 9 70662404 70663998 - Pigb protein_coding retained_intron MGP_AJ_T0093267.1 MGP_AJ_G0035005.1 mouse_genomes_project 9 70667138 70681491 - MGP_AJ_P0093267 Pigb protein_coding nonsense_mediated_decay MGP_AJ_T0093268.1 MGP_AJ_G0035005.1 mouse_genomes_project 9 70673824 70676869 - Pigb protein_coding retained_intron MGP_AJ_T0093269.1 MGP_AJ_G0035005.1 mouse_genomes_project 9 70677682 70679470 - Pigb protein_coding retained_intron MGP_AJ_T0093043.1 MGP_AJ_G0034965.1 mouse_genomes_project 9 64592607 64619400 - MGP_AJ_P0093043 Tpm1 protein_coding protein_coding MGP_AJ_T0093044.1 MGP_AJ_G0034965.1 mouse_genomes_project 9 64592607 64613901 - MGP_AJ_P0093044 Tpm1 protein_coding protein_coding MGP_AJ_T0093045.1 MGP_AJ_G0034965.1 mouse_genomes_project 9 64592607 64619261 - MGP_AJ_P0093045 Tpm1 protein_coding protein_coding MGP_AJ_T0093046.1 MGP_AJ_G0034965.1 mouse_genomes_project 9 64592609 64613796 - MGP_AJ_P0093046 Tpm1 protein_coding protein_coding MGP_AJ_T0093047.1 MGP_AJ_G0034965.1 mouse_genomes_project 9 64592610 64619203 - MGP_AJ_P0093047 Tpm1 protein_coding protein_coding MGP_AJ_T0093048.1 MGP_AJ_G0034965.1 mouse_genomes_project 9 64592610 64613956 - MGP_AJ_P0093048 Tpm1 protein_coding protein_coding MGP_AJ_T0093049.1 MGP_AJ_G0034965.1 mouse_genomes_project 9 64592623 64619195 - MGP_AJ_P0093049 Tpm1 protein_coding protein_coding MGP_AJ_T0093050.1 MGP_AJ_G0034965.1 mouse_genomes_project 9 64592623 64619180 - MGP_AJ_P0093050 Tpm1 protein_coding nonsense_mediated_decay MGP_AJ_T0093051.1 MGP_AJ_G0034965.1 mouse_genomes_project 9 64592632 64619269 - MGP_AJ_P0093051 Tpm1 protein_coding protein_coding MGP_AJ_T0093052.1 MGP_AJ_G0034965.1 mouse_genomes_project 9 64592639 64613772 - MGP_AJ_P0093052 Tpm1 protein_coding nonsense_mediated_decay MGP_AJ_T0093053.1 MGP_AJ_G0034965.1 mouse_genomes_project 9 64594341 64619166 - MGP_AJ_P0093053 Tpm1 protein_coding protein_coding MGP_AJ_T0093054.1 MGP_AJ_G0034965.1 mouse_genomes_project 9 64594343 64613703 - MGP_AJ_P0093054 Tpm1 protein_coding protein_coding MGP_AJ_T0093055.1 MGP_AJ_G0034965.1 mouse_genomes_project 9 64597911 64619207 - MGP_AJ_P0093055 Tpm1 protein_coding protein_coding MGP_AJ_T0093056.1 MGP_AJ_G0034965.1 mouse_genomes_project 9 64597911 64619258 - MGP_AJ_P0093056 Tpm1 protein_coding protein_coding MGP_AJ_T0093057.1 MGP_AJ_G0034965.1 mouse_genomes_project 9 64597985 64613835 - MGP_AJ_P0093057 Tpm1 protein_coding protein_coding MGP_AJ_T0093058.1 MGP_AJ_G0034965.1 mouse_genomes_project 9 64598008 64619137 - MGP_AJ_P0093058 Tpm1 protein_coding protein_coding MGP_AJ_T0093059.1 MGP_AJ_G0034965.1 mouse_genomes_project 9 64598067 64613727 - MGP_AJ_P0093059 Tpm1 protein_coding protein_coding MGP_AJ_T0093060.1 MGP_AJ_G0034965.1 mouse_genomes_project 9 64598867 64619256 - MGP_AJ_P0093060 Tpm1 protein_coding protein_coding MGP_AJ_T0093061.1 MGP_AJ_G0034965.1 mouse_genomes_project 9 64599939 64602829 - Tpm1 protein_coding processed_transcript MGP_AJ_T0093062.1 MGP_AJ_G0034965.1 mouse_genomes_project 9 64602223 64619112 - Tpm1 protein_coding retained_intron MGP_AJ_T0093063.1 MGP_AJ_G0034965.1 mouse_genomes_project 9 64603781 64619185 - Tpm1 protein_coding processed_transcript MGP_AJ_T0094043.1 MGP_AJ_G0035181.1 mouse_genomes_project 9 101327266 101536602 - MGP_AJ_P0094043 Tmem108 protein_coding protein_coding MGP_AJ_T0094044.1 MGP_AJ_G0035181.1 mouse_genomes_project 9 101328097 101605827 - MGP_AJ_P0094044 Tmem108 protein_coding protein_coding MGP_AJ_T0094045.1 MGP_AJ_G0035181.1 mouse_genomes_project 9 101328755 101605784 - MGP_AJ_P0094045 Tmem108 protein_coding protein_coding MGP_AJ_T0094046.1 MGP_AJ_G0035181.1 mouse_genomes_project 9 101328758 101337971 - Tmem108 protein_coding retained_intron MGP_AJ_T0094047.1 MGP_AJ_G0035181.1 mouse_genomes_project 9 101596234 101605780 - Tmem108 protein_coding retained_intron MGP_AJ_T0093444.1 MGP_AJ_G0035057.1 mouse_genomes_project 9 77565577 77590115 - MGP_AJ_P0093444 Tmem30a protein_coding protein_coding MGP_AJ_T0093445.1 MGP_AJ_G0035057.1 mouse_genomes_project 9 77565577 77590192 - MGP_AJ_P0093445 Tmem30a protein_coding protein_coding MGP_AJ_T0093446.1 MGP_AJ_G0035057.1 mouse_genomes_project 9 77569165 77590115 - Tmem30a protein_coding retained_intron MGP_AJ_T0093447.1 MGP_AJ_G0035057.1 mouse_genomes_project 9 77573467 77590115 - Tmem30a protein_coding retained_intron MGP_AJ_T0093520.1 MGP_AJ_G0035068.1 mouse_genomes_project 9 81307076 81399468 + MGP_AJ_P0093520 Sh3bgrl2 protein_coding protein_coding MGP_AJ_T0093521.1 MGP_AJ_G0035068.1 mouse_genomes_project 9 81307078 81307761 + Sh3bgrl2 protein_coding retained_intron MGP_AJ_T0093522.1 MGP_AJ_G0035068.1 mouse_genomes_project 9 81307099 81398967 + MGP_AJ_P0093522 Sh3bgrl2 protein_coding protein_coding MGP_AJ_T0093523.1 MGP_AJ_G0035068.1 mouse_genomes_project 9 81307208 81361307 + MGP_AJ_P0093523 Sh3bgrl2 protein_coding protein_coding MGP_AJ_T0016083.1 MGP_AJ_G0014178.1 mouse_genomes_project 9 69840266 69840880 + processed_pseudogene processed_pseudogene MGP_AJ_T0101583.1 MGP_AJ_G0039549.1 mouse_genomes_project 9 90344667 90344798 - Gm25417 snoRNA snoRNA MGP_AJ_T0095182.1 MGP_AJ_G0035373.1 mouse_genomes_project 9 112895563 112916063 + MGP_AJ_P0095182 Cmtm6 protein_coding protein_coding MGP_AJ_T0092752.1 MGP_AJ_G0034888.1 mouse_genomes_project 9 57426111 57443964 - Nr2e3 protein_coding retained_intron MGP_AJ_T0092753.1 MGP_AJ_G0034888.1 mouse_genomes_project 9 57426111 57433377 - Nr2e3 protein_coding retained_intron MGP_AJ_T0092754.1 MGP_AJ_G0034888.1 mouse_genomes_project 9 57426111 57433460 - MGP_AJ_P0092754 Nr2e3 protein_coding protein_coding MGP_AJ_T0092755.1 MGP_AJ_G0034888.1 mouse_genomes_project 9 57426327 57433453 - Nr2e3 protein_coding retained_intron MGP_AJ_T0092756.1 MGP_AJ_G0034888.1 mouse_genomes_project 9 57426468 57433417 - Nr2e3 protein_coding retained_intron MGP_AJ_T0092757.1 MGP_AJ_G0034888.1 mouse_genomes_project 9 57430092 57432134 - Nr2e3 protein_coding retained_intron MGP_AJ_T0092758.1 MGP_AJ_G0034888.1 mouse_genomes_project 9 57430713 57432737 - Nr2e3 protein_coding processed_transcript MGP_AJ_T0092759.1 MGP_AJ_G0034888.1 mouse_genomes_project 9 57431940 57443960 - Nr2e3 protein_coding processed_transcript MGP_AJ_T0092760.1 MGP_AJ_G0034888.1 mouse_genomes_project 9 57432060 57433417 - Nr2e3 protein_coding retained_intron MGP_AJ_T0095119.1 MGP_AJ_G0035357.1 mouse_genomes_project 9 110127330 110252138 - MGP_AJ_P0095119 Arpp21 protein_coding protein_coding MGP_AJ_T0095120.1 MGP_AJ_G0035357.1 mouse_genomes_project 9 110127330 110252138 - MGP_AJ_P0095120 Arpp21 protein_coding protein_coding MGP_AJ_T0095121.1 MGP_AJ_G0035357.1 mouse_genomes_project 9 110127330 110250335 - MGP_AJ_P0095121 Arpp21 protein_coding protein_coding MGP_AJ_T0095122.1 MGP_AJ_G0035357.1 mouse_genomes_project 9 110127330 110250106 - MGP_AJ_P0095122 Arpp21 protein_coding protein_coding MGP_AJ_T0095123.1 MGP_AJ_G0035357.1 mouse_genomes_project 9 110127473 110250149 - MGP_AJ_P0095123 Arpp21 protein_coding protein_coding MGP_AJ_T0095124.1 MGP_AJ_G0035357.1 mouse_genomes_project 9 110127475 110297814 - Arpp21 protein_coding retained_intron MGP_AJ_T0095125.1 MGP_AJ_G0035357.1 mouse_genomes_project 9 110127497 110298407 - MGP_AJ_P0095125 Arpp21 protein_coding protein_coding MGP_AJ_T0095126.1 MGP_AJ_G0035357.1 mouse_genomes_project 9 110127499 110295895 - MGP_AJ_P0095126 Arpp21 protein_coding protein_coding MGP_AJ_T0095127.1 MGP_AJ_G0035357.1 mouse_genomes_project 9 110127976 110252019 - MGP_AJ_P0095127 Arpp21 protein_coding nonsense_mediated_decay MGP_AJ_T0095128.1 MGP_AJ_G0035357.1 mouse_genomes_project 9 110179096 110280582 - MGP_AJ_P0095128 Arpp21 protein_coding protein_coding MGP_AJ_T0095129.1 MGP_AJ_G0035357.1 mouse_genomes_project 9 110218925 110298232 - Arpp21 protein_coding retained_intron MGP_AJ_T0095130.1 MGP_AJ_G0035357.1 mouse_genomes_project 9 110219938 110298407 - MGP_AJ_P0095130 Arpp21 protein_coding protein_coding MGP_AJ_T0095131.1 MGP_AJ_G0035357.1 mouse_genomes_project 9 110225325 110280672 - MGP_AJ_P0095131 Arpp21 protein_coding protein_coding MGP_AJ_T0095132.1 MGP_AJ_G0035357.1 mouse_genomes_project 9 110240027 110297018 - Arpp21 protein_coding retained_intron MGP_AJ_T0095133.1 MGP_AJ_G0035357.1 mouse_genomes_project 9 110243504 110280647 - MGP_AJ_P0095133 Arpp21 protein_coding protein_coding MGP_AJ_T0095134.1 MGP_AJ_G0035357.1 mouse_genomes_project 9 110243550 110280647 - MGP_AJ_P0095134 Arpp21 protein_coding protein_coding MGP_AJ_T0095135.1 MGP_AJ_G0035357.1 mouse_genomes_project 9 110243588 110297206 - MGP_AJ_P0095135 Arpp21 protein_coding protein_coding MGP_AJ_T0095136.1 MGP_AJ_G0035357.1 mouse_genomes_project 9 110244476 110252298 - MGP_AJ_P0095136 Arpp21 protein_coding protein_coding MGP_AJ_T0095137.1 MGP_AJ_G0035357.1 mouse_genomes_project 9 110244476 110252301 - MGP_AJ_P0095137 Arpp21 protein_coding protein_coding MGP_AJ_T0095138.1 MGP_AJ_G0035357.1 mouse_genomes_project 9 110245416 110252276 - Arpp21 protein_coding retained_intron MGP_AJ_T0095139.1 MGP_AJ_G0035357.1 mouse_genomes_project 9 110245422 110252321 - Arpp21 protein_coding processed_transcript MGP_AJ_T0095140.1 MGP_AJ_G0035357.1 mouse_genomes_project 9 110245451 110252298 - Arpp21 protein_coding processed_transcript MGP_AJ_T0095141.1 MGP_AJ_G0035357.1 mouse_genomes_project 9 110247096 110252252 - Arpp21 protein_coding retained_intron MGP_AJ_T0095142.1 MGP_AJ_G0035357.1 mouse_genomes_project 9 110247126 110250479 - Arpp21 protein_coding processed_transcript MGP_AJ_T0095143.1 MGP_AJ_G0035357.1 mouse_genomes_project 9 110247169 110250335 - Arpp21 protein_coding processed_transcript MGP_AJ_T0095144.1 MGP_AJ_G0035357.1 mouse_genomes_project 9 110247423 110250322 - Arpp21 protein_coding retained_intron MGP_AJ_T0095145.1 MGP_AJ_G0035357.1 mouse_genomes_project 9 110250114 110295296 - Arpp21 protein_coding processed_transcript MGP_AJ_T0095146.1 MGP_AJ_G0035357.1 mouse_genomes_project 9 110251963 110297263 - Arpp21 protein_coding processed_transcript MGP_AJ_T0095147.1 MGP_AJ_G0035357.1 mouse_genomes_project 9 110252000 110299323 - Arpp21 protein_coding processed_transcript MGP_AJ_T0095148.1 MGP_AJ_G0035357.1 mouse_genomes_project 9 110252033 110252812 - Arpp21 protein_coding processed_transcript MGP_AJ_T0095149.1 MGP_AJ_G0035357.1 mouse_genomes_project 9 110252301 110252846 - Arpp21 protein_coding processed_transcript MGP_AJ_T0095150.1 MGP_AJ_G0035357.1 mouse_genomes_project 9 110268444 110280625 - Arpp21 protein_coding retained_intron MGP_AJ_T0092162.1 MGP_AJ_G0034701.1 mouse_genomes_project 9 42110250 42113802 - MGP_AJ_P0092162 Ttc36 protein_coding protein_coding MGP_AJ_T0094159.1 MGP_AJ_G0035200.1 mouse_genomes_project 9 104046997 104052289 - MGP_AJ_P0094159 Glyctk protein_coding protein_coding MGP_AJ_T0094160.1 MGP_AJ_G0035200.1 mouse_genomes_project 9 104047009 104052309 - MGP_AJ_P0094160 Glyctk protein_coding protein_coding MGP_AJ_T0094161.1 MGP_AJ_G0035200.1 mouse_genomes_project 9 104051461 104052288 - MGP_AJ_P0094161 Glyctk protein_coding protein_coding MGP_AJ_T0094162.1 MGP_AJ_G0035200.1 mouse_genomes_project 9 104051760 104052281 - MGP_AJ_P0094162 Glyctk protein_coding protein_coding MGP_AJ_T0005480.1 MGP_AJ_G0004633.1 mouse_genomes_project 9 77481758 77483890 + 4930562D21Rik antisense antisense MGP_AJ_T0093212.1 MGP_AJ_G0034996.1 mouse_genomes_project 9 70084481 70126292 - MGP_AJ_P0093212 Tex9 protein_coding nonsense_mediated_decay MGP_AJ_T0093213.1 MGP_AJ_G0034996.1 mouse_genomes_project 9 70092666 70126292 - MGP_AJ_P0093213 Tex9 protein_coding protein_coding MGP_AJ_T0093214.1 MGP_AJ_G0034996.1 mouse_genomes_project 9 70094435 70109743 - Tex9 protein_coding retained_intron MGP_AJ_T0093215.1 MGP_AJ_G0034996.1 mouse_genomes_project 9 70095166 70126548 - MGP_AJ_P0093215 Tex9 protein_coding protein_coding MGP_AJ_T0093216.1 MGP_AJ_G0034996.1 mouse_genomes_project 9 70095185 70126333 - MGP_AJ_P0093216 Tex9 protein_coding protein_coding MGP_AJ_T0093217.1 MGP_AJ_G0034996.1 mouse_genomes_project 9 70095194 70126543 - MGP_AJ_P0093217 Tex9 protein_coding nonsense_mediated_decay MGP_AJ_T0093218.1 MGP_AJ_G0034996.1 mouse_genomes_project 9 70095270 70126437 - MGP_AJ_P0093218 Tex9 protein_coding nonsense_mediated_decay MGP_AJ_T0093219.1 MGP_AJ_G0034996.1 mouse_genomes_project 9 70096017 70126297 - Tex9 protein_coding retained_intron MGP_AJ_T0093220.1 MGP_AJ_G0034996.1 mouse_genomes_project 9 70096036 70114678 - Tex9 protein_coding processed_transcript MGP_AJ_T0093221.1 MGP_AJ_G0034996.1 mouse_genomes_project 9 70096066 70122418 - MGP_AJ_P0093221 Tex9 protein_coding nonsense_mediated_decay MGP_AJ_T0093222.1 MGP_AJ_G0034996.1 mouse_genomes_project 9 70112113 70112979 - Tex9 protein_coding retained_intron MGP_AJ_T0093223.1 MGP_AJ_G0034996.1 mouse_genomes_project 9 70112213 70121177 - MGP_AJ_P0093223 Tex9 protein_coding protein_coding MGP_AJ_T0093224.1 MGP_AJ_G0034996.1 mouse_genomes_project 9 70112214 70126275 - MGP_AJ_P0093224 Tex9 protein_coding protein_coding MGP_AJ_T0093225.1 MGP_AJ_G0034996.1 mouse_genomes_project 9 70114614 70126425 - Tex9 protein_coding retained_intron MGP_AJ_T0093226.1 MGP_AJ_G0034996.1 mouse_genomes_project 9 70114793 70126271 - Tex9 protein_coding retained_intron MGP_AJ_T0018528.1 MGP_AJ_G0015715.1 mouse_genomes_project 9 54412496 54428425 - Gm10658 processed_transcript processed_transcript MGP_AJ_T0018529.1 MGP_AJ_G0015715.1 mouse_genomes_project 9 54413069 54428584 - Gm10658 processed_transcript processed_transcript MGP_AJ_T0016046.1 MGP_AJ_G0014141.1 mouse_genomes_project 9 18429822 18430181 - processed_pseudogene processed_pseudogene MGP_AJ_T0093131.1 MGP_AJ_G0034985.1 mouse_genomes_project 9 68311555 68412776 + MGP_AJ_P0093131 Adam10 protein_coding nonsense_mediated_decay MGP_AJ_T0093132.1 MGP_AJ_G0034985.1 mouse_genomes_project 9 68311555 68414623 + MGP_AJ_P0093132 Adam10 protein_coding protein_coding MGP_AJ_T0093133.1 MGP_AJ_G0034985.1 mouse_genomes_project 9 68311574 68381952 + MGP_AJ_P0093133 Adam10 protein_coding protein_coding MGP_AJ_T0093134.1 MGP_AJ_G0034985.1 mouse_genomes_project 9 68410447 68412772 + Adam10 protein_coding retained_intron MGP_AJ_T0005454.1 MGP_AJ_G0004614.1 mouse_genomes_project 9 55169442 55225924 + antisense antisense MGP_AJ_T0005455.1 MGP_AJ_G0004614.1 mouse_genomes_project 9 55217916 55226258 + antisense antisense MGP_AJ_T0005456.1 MGP_AJ_G0004614.1 mouse_genomes_project 9 55219310 55226163 + antisense antisense MGP_AJ_T0094250.1 MGP_AJ_G0035217.1 mouse_genomes_project 9 104403106 104404546 + MGP_AJ_P0094250 Iqcf5 protein_coding protein_coding MGP_AJ_T0091462.1 MGP_AJ_G0034416.1 mouse_genomes_project 9 17942584 17947285 - MGP_AJ_P0091462 Zglp1 protein_coding protein_coding MGP_AJ_T0091635.1 MGP_AJ_G0034482.1 mouse_genomes_project 9 23917902 23925557 + MGP_AJ_P0091635 Thyn1 protein_coding protein_coding MGP_AJ_T0100271.1 MGP_AJ_G0038237.1 mouse_genomes_project 9 50139599 50139717 + Gm22242 snRNA snRNA MGP_AJ_T0092071.1 MGP_AJ_G0034674.1 mouse_genomes_project 9 41422270 41426734 + MGP_AJ_P0092071 Mcam protein_coding nonsense_mediated_decay MGP_AJ_T0092072.1 MGP_AJ_G0034674.1 mouse_genomes_project 9 41422453 41430531 + MGP_AJ_P0092072 Mcam protein_coding protein_coding MGP_AJ_T0092073.1 MGP_AJ_G0034674.1 mouse_genomes_project 9 41424345 41425074 + MGP_AJ_P0092073 Mcam protein_coding protein_coding MGP_AJ_T0092074.1 MGP_AJ_G0034674.1 mouse_genomes_project 9 41424662 41427482 + Mcam protein_coding retained_intron MGP_AJ_T0093337.1 MGP_AJ_G0035025.1 mouse_genomes_project 9 73316288 73361402 - MGP_AJ_P0093337 Scg3 protein_coding protein_coding MGP_AJ_T0093338.1 MGP_AJ_G0035025.1 mouse_genomes_project 9 73316850 73361491 - MGP_AJ_P0093338 Scg3 protein_coding unknown_likely_coding MGP_AJ_T0091355.1 MGP_AJ_G0034357.1 mouse_genomes_project 9 15396745 15415461 - MGP_AJ_P0091355 protein_coding protein_coding MGP_AJ_T0092104.1 MGP_AJ_G0034685.1 mouse_genomes_project 9 41643569 41657046 - MGP_AJ_P0092104 Vps11 protein_coding protein_coding MGP_AJ_T0005547.1 MGP_AJ_G0004680.1 mouse_genomes_project 9 108729691 108735137 - Gm42762 antisense antisense MGP_AJ_T0093123.1 MGP_AJ_G0034979.1 mouse_genomes_project 9 67831574 68025439 + MGP_AJ_P0093123 Myo1e protein_coding protein_coding MGP_AJ_T0091980.1 MGP_AJ_G0034647.1 mouse_genomes_project 9 37484261 37537473 - MGP_AJ_P0091980 Gramd1b protein_coding protein_coding MGP_AJ_T0091981.1 MGP_AJ_G0034647.1 mouse_genomes_project 9 37484267 37734593 - MGP_AJ_P0091981 Gramd1b protein_coding protein_coding MGP_AJ_T0091982.1 MGP_AJ_G0034647.1 mouse_genomes_project 9 37484270 37537095 - MGP_AJ_P0091982 Gramd1b protein_coding protein_coding MGP_AJ_T0091983.1 MGP_AJ_G0034647.1 mouse_genomes_project 9 37484273 37661149 - MGP_AJ_P0091983 Gramd1b protein_coding protein_coding MGP_AJ_T0091984.1 MGP_AJ_G0034647.1 mouse_genomes_project 9 37488903 37595568 - MGP_AJ_P0091984 Gramd1b protein_coding protein_coding MGP_AJ_T0091985.1 MGP_AJ_G0034647.1 mouse_genomes_project 9 37488934 37661243 - MGP_AJ_P0091985 Gramd1b protein_coding protein_coding MGP_AJ_T0091986.1 MGP_AJ_G0034647.1 mouse_genomes_project 9 37491053 37498019 - Gramd1b protein_coding retained_intron MGP_AJ_T0091987.1 MGP_AJ_G0034647.1 mouse_genomes_project 9 37507923 37524682 - Gramd1b protein_coding retained_intron MGP_AJ_T0091988.1 MGP_AJ_G0034647.1 mouse_genomes_project 9 37508687 37595866 - Gramd1b protein_coding processed_transcript MGP_AJ_T0091989.1 MGP_AJ_G0034647.1 mouse_genomes_project 9 37508689 37595852 - Gramd1b protein_coding processed_transcript MGP_AJ_T0091990.1 MGP_AJ_G0034647.1 mouse_genomes_project 9 37524639 37673067 - Gramd1b protein_coding processed_transcript MGP_AJ_T0091991.1 MGP_AJ_G0034647.1 mouse_genomes_project 9 37524652 37673057 - Gramd1b protein_coding processed_transcript MGP_AJ_T0091992.1 MGP_AJ_G0034647.1 mouse_genomes_project 9 37524699 37579866 - Gramd1b protein_coding processed_transcript MGP_AJ_T0092622.1 MGP_AJ_G0034852.1 mouse_genomes_project 9 54975684 54982556 + MGP_AJ_P0092622 Ulk3 protein_coding protein_coding MGP_AJ_T0091675.1 MGP_AJ_G0034496.1 mouse_genomes_project 9 28249263 28301018 + MGP_AJ_P0091675 Prdm10 protein_coding protein_coding MGP_AJ_T0091676.1 MGP_AJ_G0034496.1 mouse_genomes_project 9 28284025 28352357 + MGP_AJ_P0091676 Prdm10 protein_coding unknown_likely_coding MGP_AJ_T0091677.1 MGP_AJ_G0034496.1 mouse_genomes_project 9 28285209 28301007 + Prdm10 protein_coding retained_intron MGP_AJ_T0091678.1 MGP_AJ_G0034496.1 mouse_genomes_project 9 28285508 28349164 + MGP_AJ_P0091678 Prdm10 protein_coding protein_coding MGP_AJ_T0102082.1 MGP_AJ_G0039858.1 mouse_genomes_project 9 107494096 107739649 - transcribed_unprocessed_pseudogene processed_transcript MGP_AJ_T0011094.1 MGP_AJ_G0009216.1 mouse_genomes_project 9 106484527 106484647 - Gm24083 miRNA miRNA MGP_AJ_T0091886.1 MGP_AJ_G0034570.1 mouse_genomes_project 9 35424886 35425954 + MGP_AJ_P0091886 Olfr25 protein_coding protein_coding MGP_AJ_T0093357.1 MGP_AJ_G0035032.1 mouse_genomes_project 9 74805628 74841776 - protein_coding retained_intron MGP_AJ_T0093358.1 MGP_AJ_G0035032.1 mouse_genomes_project 9 74805628 75058700 - MGP_AJ_P0093358 protein_coding protein_coding MGP_AJ_T0093359.1 MGP_AJ_G0035032.1 mouse_genomes_project 9 74805628 75058707 - MGP_AJ_P0093359 protein_coding protein_coding MGP_AJ_T0093360.1 MGP_AJ_G0035032.1 mouse_genomes_project 9 74805633 75058638 - MGP_AJ_P0093360 protein_coding protein_coding MGP_AJ_T0093361.1 MGP_AJ_G0035032.1 mouse_genomes_project 9 74805633 75058630 - MGP_AJ_P0093361 protein_coding protein_coding MGP_AJ_T0093362.1 MGP_AJ_G0035032.1 mouse_genomes_project 9 74805636 74964668 - MGP_AJ_P0093362 protein_coding protein_coding MGP_AJ_T0093363.1 MGP_AJ_G0035032.1 mouse_genomes_project 9 74805636 75058753 - MGP_AJ_P0093363 protein_coding protein_coding MGP_AJ_T0093364.1 MGP_AJ_G0035032.1 mouse_genomes_project 9 74805659 74841525 - MGP_AJ_P0093364 protein_coding protein_coding MGP_AJ_T0093365.1 MGP_AJ_G0035032.1 mouse_genomes_project 9 74805857 74964714 - MGP_AJ_P0093365 protein_coding protein_coding MGP_AJ_T0093366.1 MGP_AJ_G0035032.1 mouse_genomes_project 9 74805938 74964630 - MGP_AJ_P0093366 protein_coding unknown_likely_coding MGP_AJ_T0093367.1 MGP_AJ_G0035032.1 mouse_genomes_project 9 74864967 75058698 - MGP_AJ_P0093367 protein_coding protein_coding MGP_AJ_T0093368.1 MGP_AJ_G0035032.1 mouse_genomes_project 9 74943446 75058688 - MGP_AJ_P0093368 protein_coding protein_coding MGP_AJ_T0093369.1 MGP_AJ_G0035032.1 mouse_genomes_project 9 74943449 74964677 - MGP_AJ_P0093369 protein_coding protein_coding MGP_AJ_T0093370.1 MGP_AJ_G0035032.1 mouse_genomes_project 9 74943477 75050686 - MGP_AJ_P0093370 protein_coding protein_coding MGP_AJ_T0093371.1 MGP_AJ_G0035032.1 mouse_genomes_project 9 74962073 74964865 - protein_coding retained_intron MGP_AJ_T0093372.1 MGP_AJ_G0035032.1 mouse_genomes_project 9 75057266 75063564 - protein_coding processed_transcript MGP_AJ_T0005518.1 MGP_AJ_G0004658.1 mouse_genomes_project 9 103329870 103339517 + Gm19667 antisense antisense MGP_AJ_T0091263.1 MGP_AJ_G0034324.1 mouse_genomes_project 9 10722234 10741060 + MGP_AJ_P0091263 Fam76b protein_coding nonsense_mediated_decay MGP_AJ_T0091264.1 MGP_AJ_G0034324.1 mouse_genomes_project 9 10722234 10741060 + MGP_AJ_P0091264 Fam76b protein_coding protein_coding MGP_AJ_T0091265.1 MGP_AJ_G0034324.1 mouse_genomes_project 9 10722253 10725776 + Fam76b protein_coding retained_intron MGP_AJ_T0091266.1 MGP_AJ_G0034324.1 mouse_genomes_project 9 10731221 10734585 + Fam76b protein_coding retained_intron MGP_AJ_T0016045.1 MGP_AJ_G0014140.1 mouse_genomes_project 9 11635717 11636245 + processed_pseudogene processed_pseudogene MGP_AJ_T0002400.1 MGP_AJ_G0002309.1 mouse_genomes_project 9 84500114 84502637 + TEC TEC MGP_AJ_T0009222.1 MGP_AJ_G0007409.1 mouse_genomes_project 9 28045403 28047262 - Gm17508 lincRNA lincRNA MGP_AJ_T0009251.1 MGP_AJ_G0007433.1 mouse_genomes_project 9 54537338 54548065 + 1700041C23Rik lincRNA lincRNA MGP_AJ_T0092923.1 MGP_AJ_G0034931.1 mouse_genomes_project 9 62744452 62775039 + MGP_AJ_P0092923 Parp16 protein_coding protein_coding MGP_AJ_T0091779.1 MGP_AJ_G0034526.1 mouse_genomes_project 9 32867208 33029454 + MGP_AJ_P0091779 9230113P08Rik protein_coding protein_coding MGP_AJ_T0009239.1 MGP_AJ_G0007424.1 mouse_genomes_project 9 41411620 41422287 - Gm10687 lincRNA lincRNA MGP_AJ_T0092633.1 MGP_AJ_G0034860.1 mouse_genomes_project 9 55182179 55228714 - MGP_AJ_P0092633 Arid3b protein_coding protein_coding MGP_AJ_T0092634.1 MGP_AJ_G0034860.1 mouse_genomes_project 9 55182182 55228716 - MGP_AJ_P0092634 Arid3b protein_coding protein_coding MGP_AJ_T0092635.1 MGP_AJ_G0034860.1 mouse_genomes_project 9 55182185 55183474 - Arid3b protein_coding processed_transcript MGP_AJ_T0092636.1 MGP_AJ_G0034860.1 mouse_genomes_project 9 55182338 55226199 - MGP_AJ_P0092636 Arid3b protein_coding protein_coding MGP_AJ_T0092637.1 MGP_AJ_G0034860.1 mouse_genomes_project 9 55183986 55188106 - MGP_AJ_P0092637 Arid3b protein_coding protein_coding MGP_AJ_T0092638.1 MGP_AJ_G0034860.1 mouse_genomes_project 9 55184248 55228486 - MGP_AJ_P0092638 Arid3b protein_coding nonsense_mediated_decay MGP_AJ_T0092639.1 MGP_AJ_G0034860.1 mouse_genomes_project 9 55186570 55228769 - MGP_AJ_P0092639 Arid3b protein_coding nonsense_mediated_decay MGP_AJ_T0092640.1 MGP_AJ_G0034860.1 mouse_genomes_project 9 55186571 55228801 - MGP_AJ_P0092640 Arid3b protein_coding protein_coding MGP_AJ_T0092641.1 MGP_AJ_G0034860.1 mouse_genomes_project 9 55190034 55212566 - MGP_AJ_P0092641 Arid3b protein_coding protein_coding MGP_AJ_T0092642.1 MGP_AJ_G0034860.1 mouse_genomes_project 9 55200013 55228778 - Arid3b protein_coding retained_intron MGP_AJ_T0091456.1 MGP_AJ_G0034410.1 mouse_genomes_project 9 17781830 17827785 - MGP_AJ_P0091456 Dnmt1 protein_coding protein_coding MGP_AJ_T0091448.1 MGP_AJ_G0034407.1 mouse_genomes_project 9 17747179 17753080 - MGP_AJ_P0091448 Angptl6 protein_coding protein_coding MGP_AJ_T0094623.1 MGP_AJ_G0035274.1 mouse_genomes_project 9 106303486 106321683 + MGP_AJ_P0094623 1700102P08Rik protein_coding protein_coding MGP_AJ_T0094624.1 MGP_AJ_G0035274.1 mouse_genomes_project 9 106303515 106308455 + MGP_AJ_P0094624 1700102P08Rik protein_coding protein_coding MGP_AJ_T0100314.1 MGP_AJ_G0038280.1 mouse_genomes_project 9 116670810 116670891 - Gm22479 snRNA snRNA MGP_AJ_T0092438.1 MGP_AJ_G0034792.1 mouse_genomes_project 9 50809789 50909359 - MGP_AJ_P0092438 Atm protein_coding unknown_likely_coding MGP_AJ_T0092439.1 MGP_AJ_G0034792.1 mouse_genomes_project 9 50811802 50909382 - MGP_AJ_P0092439 Atm protein_coding protein_coding MGP_AJ_T0092440.1 MGP_AJ_G0034792.1 mouse_genomes_project 9 50812758 50815216 - Atm protein_coding retained_intron MGP_AJ_T0092441.1 MGP_AJ_G0034792.1 mouse_genomes_project 9 50818030 50826273 - MGP_AJ_P0092441 Atm protein_coding protein_coding MGP_AJ_T0092442.1 MGP_AJ_G0034792.1 mouse_genomes_project 9 50894479 50909315 - Atm protein_coding retained_intron MGP_AJ_T0092443.1 MGP_AJ_G0034792.1 mouse_genomes_project 9 50899828 50909250 - MGP_AJ_P0092443 Atm protein_coding protein_coding MGP_AJ_T0093931.1 MGP_AJ_G0035160.1 mouse_genomes_project 9 98439857 98586300 + MGP_AJ_P0093931 Stag1 protein_coding protein_coding MGP_AJ_T0093932.1 MGP_AJ_G0035160.1 mouse_genomes_project 9 98487218 98800506 + MGP_AJ_P0093932 Stag1 protein_coding protein_coding MGP_AJ_T0093933.1 MGP_AJ_G0035160.1 mouse_genomes_project 9 98487218 98644990 + MGP_AJ_P0093933 Stag1 protein_coding protein_coding MGP_AJ_T0093934.1 MGP_AJ_G0035160.1 mouse_genomes_project 9 98487370 98587879 + Stag1 protein_coding retained_intron MGP_AJ_T0093935.1 MGP_AJ_G0035160.1 mouse_genomes_project 9 98487383 98560858 + Stag1 protein_coding retained_intron MGP_AJ_T0093936.1 MGP_AJ_G0035160.1 mouse_genomes_project 9 98487383 98560877 + Stag1 protein_coding retained_intron MGP_AJ_T0093937.1 MGP_AJ_G0035160.1 mouse_genomes_project 9 98487383 98800505 + MGP_AJ_P0093937 Stag1 protein_coding protein_coding MGP_AJ_T0093938.1 MGP_AJ_G0035160.1 mouse_genomes_project 9 98487386 98710981 + MGP_AJ_P0093938 Stag1 protein_coding nonsense_mediated_decay MGP_AJ_T0093939.1 MGP_AJ_G0035160.1 mouse_genomes_project 9 98487406 98799359 + MGP_AJ_P0093939 Stag1 protein_coding nonsense_mediated_decay MGP_AJ_T0093940.1 MGP_AJ_G0035160.1 mouse_genomes_project 9 98487538 98799366 + MGP_AJ_P0093940 Stag1 protein_coding nonsense_mediated_decay MGP_AJ_T0093941.1 MGP_AJ_G0035160.1 mouse_genomes_project 9 98487540 98625009 + MGP_AJ_P0093941 Stag1 protein_coding protein_coding MGP_AJ_T0093942.1 MGP_AJ_G0035160.1 mouse_genomes_project 9 98644902 98799376 + Stag1 protein_coding processed_transcript MGP_AJ_T0093943.1 MGP_AJ_G0035160.1 mouse_genomes_project 9 98680151 98692603 + Stag1 protein_coding retained_intron MGP_AJ_T0093944.1 MGP_AJ_G0035160.1 mouse_genomes_project 9 98688467 98798794 + MGP_AJ_P0093944 Stag1 protein_coding protein_coding MGP_AJ_T0093945.1 MGP_AJ_G0035160.1 mouse_genomes_project 9 98691579 98699228 + Stag1 protein_coding retained_intron MGP_AJ_T0093946.1 MGP_AJ_G0035160.1 mouse_genomes_project 9 98737214 98793616 + MGP_AJ_P0093946 Stag1 protein_coding protein_coding MGP_AJ_T0093947.1 MGP_AJ_G0035160.1 mouse_genomes_project 9 98797728 98801336 + Stag1 protein_coding retained_intron MGP_AJ_T0091365.1 MGP_AJ_G0034367.1 mouse_genomes_project 9 16166094 16167201 - MGP_AJ_P0091365 Olfr843 protein_coding protein_coding MGP_AJ_T0102080.1 MGP_AJ_G0039857.1 mouse_genomes_project 9 97267024 97281771 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_AJ_T0102081.1 MGP_AJ_G0039857.1 mouse_genomes_project 9 97281259 97285650 + transcribed_unprocessed_pseudogene processed_transcript MGP_AJ_T0011070.1 MGP_AJ_G0009192.1 mouse_genomes_project 9 61744440 61744567 + Gm24106 miRNA miRNA MGP_AJ_T0091550.1 MGP_AJ_G0034447.1 mouse_genomes_project 9 18855608 18858575 + MGP_AJ_P0091550 Swsap1 protein_coding protein_coding MGP_AJ_T0091146.1 MGP_AJ_G0034287.1 mouse_genomes_project 9 1259920 1263247 + MGP_AJ_P0091146 Msantd4 protein_coding protein_coding MGP_AJ_T0016132.1 MGP_AJ_G0014227.1 mouse_genomes_project 9 88729517 88729809 - processed_pseudogene processed_pseudogene MGP_AJ_T0011054.1 MGP_AJ_G0009176.1 mouse_genomes_project 9 39704169 39704238 + Gm44311 miRNA miRNA MGP_AJ_T0091934.1 MGP_AJ_G0034612.1 mouse_genomes_project 9 36652200 36653517 - MGP_AJ_P0091934 protein_coding protein_coding MGP_AJ_T0093321.1 MGP_AJ_G0035016.1 mouse_genomes_project 9 72883072 72956890 + MGP_AJ_P0093321 Myo5c protein_coding protein_coding MGP_AJ_T0091187.1 MGP_AJ_G0034302.1 mouse_genomes_project 9 4525621 4535679 + MGP_AJ_P0091187 Mmp8 protein_coding protein_coding MGP_AJ_T0009331.1 MGP_AJ_G0007497.1 mouse_genomes_project 9 104017742 104018914 - Gm29208 lincRNA lincRNA MGP_AJ_T0092480.1 MGP_AJ_G0034807.1 mouse_genomes_project 9 51924037 51942182 + MGP_AJ_P0092480 Idh3a protein_coding protein_coding MGP_AJ_T0091776.1 MGP_AJ_G0034523.1 mouse_genomes_project 9 32730798 32732384 - MGP_AJ_P0091776 Gm17727 protein_coding protein_coding MGP_AJ_T0091401.1 MGP_AJ_G0034397.1 mouse_genomes_project 9 17330201 17340040 - MGP_AJ_P0091401 Zfp426 protein_coding nonsense_mediated_decay MGP_AJ_T0091402.1 MGP_AJ_G0034397.1 mouse_genomes_project 9 17330360 17354778 - MGP_AJ_P0091402 Zfp426 protein_coding protein_coding MGP_AJ_T0091403.1 MGP_AJ_G0034397.1 mouse_genomes_project 9 17330572 17339927 - MGP_AJ_P0091403 Zfp426 protein_coding protein_coding MGP_AJ_T0091404.1 MGP_AJ_G0034397.1 mouse_genomes_project 9 17331478 17354778 - MGP_AJ_P0091404 Zfp426 protein_coding protein_coding MGP_AJ_T0091405.1 MGP_AJ_G0034397.1 mouse_genomes_project 9 17332637 17335115 - Zfp426 protein_coding retained_intron MGP_AJ_T0091406.1 MGP_AJ_G0034397.1 mouse_genomes_project 9 17332783 17354767 - MGP_AJ_P0091406 Zfp426 protein_coding nonsense_mediated_decay MGP_AJ_T0091407.1 MGP_AJ_G0034397.1 mouse_genomes_project 9 17332828 17352812 - MGP_AJ_P0091407 Zfp426 protein_coding protein_coding MGP_AJ_T0091408.1 MGP_AJ_G0034397.1 mouse_genomes_project 9 17334757 17340024 - MGP_AJ_P0091408 Zfp426 protein_coding protein_coding MGP_AJ_T0091409.1 MGP_AJ_G0034397.1 mouse_genomes_project 9 17336588 17354737 - MGP_AJ_P0091409 Zfp426 protein_coding protein_coding MGP_AJ_T0091410.1 MGP_AJ_G0034397.1 mouse_genomes_project 9 17338199 17354747 - MGP_AJ_P0091410 Zfp426 protein_coding protein_coding MGP_AJ_T0091883.1 MGP_AJ_G0034567.1 mouse_genomes_project 9 35308597 35309546 + MGP_AJ_P0091883 Olfr894 protein_coding protein_coding MGP_AJ_T0092075.1 MGP_AJ_G0034675.1 mouse_genomes_project 9 41437898 41524407 - MGP_AJ_P0092075 Cbl protein_coding protein_coding MGP_AJ_T0092076.1 MGP_AJ_G0034675.1 mouse_genomes_project 9 41438314 41524460 - MGP_AJ_P0092076 Cbl protein_coding protein_coding MGP_AJ_T0092077.1 MGP_AJ_G0034675.1 mouse_genomes_project 9 41438315 41524400 - MGP_AJ_P0092077 Cbl protein_coding protein_coding MGP_AJ_T0092078.1 MGP_AJ_G0034675.1 mouse_genomes_project 9 41438320 41442702 - Cbl protein_coding processed_transcript MGP_AJ_T0092079.1 MGP_AJ_G0034675.1 mouse_genomes_project 9 41446531 41524395 - MGP_AJ_P0092079 Cbl protein_coding protein_coding MGP_AJ_T0092080.1 MGP_AJ_G0034675.1 mouse_genomes_project 9 41448167 41449367 - MGP_AJ_P0092080 Cbl protein_coding protein_coding MGP_AJ_T0092081.1 MGP_AJ_G0034675.1 mouse_genomes_project 9 41448726 41449340 - Cbl protein_coding retained_intron MGP_AJ_T0092082.1 MGP_AJ_G0034675.1 mouse_genomes_project 9 41448886 41452166 - Cbl protein_coding retained_intron MGP_AJ_T0092083.1 MGP_AJ_G0034675.1 mouse_genomes_project 9 41456332 41460177 - MGP_AJ_P0092083 Cbl protein_coding protein_coding MGP_AJ_T0092084.1 MGP_AJ_G0034675.1 mouse_genomes_project 9 41465065 41482357 - Cbl protein_coding processed_transcript MGP_AJ_T0092085.1 MGP_AJ_G0034675.1 mouse_genomes_project 9 41469410 41523955 - MGP_AJ_P0092085 Cbl protein_coding protein_coding MGP_AJ_T0016124.1 MGP_AJ_G0014219.1 mouse_genomes_project 9 86041972 86042841 - processed_pseudogene processed_pseudogene MGP_AJ_T0094041.1 MGP_AJ_G0035180.1 mouse_genomes_project 9 101265551 101324740 - MGP_AJ_P0094041 Bfsp2 protein_coding protein_coding MGP_AJ_T0094042.1 MGP_AJ_G0035180.1 mouse_genomes_project 9 101265555 101289829 - Bfsp2 protein_coding processed_transcript MGP_AJ_T0093419.1 MGP_AJ_G0035047.1 mouse_genomes_project 9 76141333 76148534 - MGP_AJ_P0093419 Dppa5a protein_coding protein_coding MGP_AJ_T0091888.1 MGP_AJ_G0034572.1 mouse_genomes_project 9 35466786 35467782 + MGP_AJ_P0091888 Olfr250 protein_coding protein_coding MGP_AJ_T0016047.1 MGP_AJ_G0014142.1 mouse_genomes_project 9 19395621 19396134 - processed_pseudogene processed_pseudogene MGP_AJ_T0092894.1 MGP_AJ_G0034922.1 mouse_genomes_project 9 61911138 62224733 + MGP_AJ_P0092894 Megf11 protein_coding protein_coding MGP_AJ_T0092895.1 MGP_AJ_G0034922.1 mouse_genomes_project 9 61911138 62232963 + MGP_AJ_P0092895 Megf11 protein_coding protein_coding MGP_AJ_T0092896.1 MGP_AJ_G0034922.1 mouse_genomes_project 9 61911138 62231048 + MGP_AJ_P0092896 Megf11 protein_coding protein_coding MGP_AJ_T0092897.1 MGP_AJ_G0034922.1 mouse_genomes_project 9 61911195 62173940 + Megf11 protein_coding retained_intron MGP_AJ_T0092898.1 MGP_AJ_G0034922.1 mouse_genomes_project 9 62017676 62231566 + MGP_AJ_P0092898 Megf11 protein_coding unknown_likely_coding MGP_AJ_T0092899.1 MGP_AJ_G0034922.1 mouse_genomes_project 9 62023893 62031630 + Megf11 protein_coding processed_transcript MGP_AJ_T0092900.1 MGP_AJ_G0034922.1 mouse_genomes_project 9 62024158 62211511 + Megf11 protein_coding retained_intron MGP_AJ_T0092901.1 MGP_AJ_G0034922.1 mouse_genomes_project 9 62069913 62162542 + Megf11 protein_coding processed_transcript MGP_AJ_T0092902.1 MGP_AJ_G0034922.1 mouse_genomes_project 9 62184515 62216163 + MGP_AJ_P0092902 Megf11 protein_coding protein_coding MGP_AJ_T0092903.1 MGP_AJ_G0034922.1 mouse_genomes_project 9 62217538 62229691 + Megf11 protein_coding processed_transcript MGP_AJ_T0011745.1 MGP_AJ_G0009867.1 mouse_genomes_project 9 100825100 100825422 + Gm25842 misc_RNA misc_RNA MGP_AJ_T0011088.1 MGP_AJ_G0009210.1 mouse_genomes_project 9 102868663 102868767 + Gm23391 miRNA miRNA MGP_AJ_T0091774.1 MGP_AJ_G0034521.1 mouse_genomes_project 9 32701938 32703142 + MGP_AJ_P0091774 Gm17677 protein_coding protein_coding MGP_AJ_T0094320.1 MGP_AJ_G0035231.1 mouse_genomes_project 9 105294813 105426295 + MGP_AJ_P0094320 Cacna2d2 protein_coding protein_coding MGP_AJ_T0094321.1 MGP_AJ_G0035231.1 mouse_genomes_project 9 105294813 105426295 + MGP_AJ_P0094321 Cacna2d2 protein_coding protein_coding MGP_AJ_T0094322.1 MGP_AJ_G0035231.1 mouse_genomes_project 9 105295054 105425943 + MGP_AJ_P0094322 Cacna2d2 protein_coding protein_coding MGP_AJ_T0094323.1 MGP_AJ_G0035231.1 mouse_genomes_project 9 105295054 105426295 + MGP_AJ_P0094323 Cacna2d2 protein_coding protein_coding MGP_AJ_T0094324.1 MGP_AJ_G0035231.1 mouse_genomes_project 9 105295231 105426295 + MGP_AJ_P0094324 Cacna2d2 protein_coding protein_coding MGP_AJ_T0094325.1 MGP_AJ_G0035231.1 mouse_genomes_project 9 105295256 105424443 + MGP_AJ_P0094325 Cacna2d2 protein_coding protein_coding MGP_AJ_T0094326.1 MGP_AJ_G0035231.1 mouse_genomes_project 9 105320778 105426296 + MGP_AJ_P0094326 Cacna2d2 protein_coding unknown_likely_coding MGP_AJ_T0094327.1 MGP_AJ_G0035231.1 mouse_genomes_project 9 105402200 105410106 + Cacna2d2 protein_coding processed_transcript MGP_AJ_T0094328.1 MGP_AJ_G0035231.1 mouse_genomes_project 9 105405855 105410468 + Cacna2d2 protein_coding processed_transcript MGP_AJ_T0094329.1 MGP_AJ_G0035231.1 mouse_genomes_project 9 105418489 105420463 + Cacna2d2 protein_coding retained_intron MGP_AJ_T0094330.1 MGP_AJ_G0035231.1 mouse_genomes_project 9 105423635 105424546 + Cacna2d2 protein_coding retained_intron MGP_AJ_T0093541.1 MGP_AJ_G0035073.1 mouse_genomes_project 9 83454172 83518748 - MGP_AJ_P0093541 Ibtk protein_coding protein_coding MGP_AJ_T0093542.1 MGP_AJ_G0035073.1 mouse_genomes_project 9 83454354 83518748 - MGP_AJ_P0093542 Ibtk protein_coding nonsense_mediated_decay MGP_AJ_T0093543.1 MGP_AJ_G0035073.1 mouse_genomes_project 9 83454369 83488706 - Ibtk protein_coding retained_intron MGP_AJ_T0093544.1 MGP_AJ_G0035073.1 mouse_genomes_project 9 83474982 83486421 - Ibtk protein_coding retained_intron MGP_AJ_T0093545.1 MGP_AJ_G0035073.1 mouse_genomes_project 9 83488065 83518728 - Ibtk protein_coding retained_intron MGP_AJ_T0093546.1 MGP_AJ_G0035073.1 mouse_genomes_project 9 83496175 83499118 - Ibtk protein_coding retained_intron MGP_AJ_T0091932.1 MGP_AJ_G0034610.1 mouse_genomes_project 9 36427340 36428303 - MGP_AJ_P0091932 Olfr945 protein_coding protein_coding MGP_AJ_T0005450.1 MGP_AJ_G0004612.1 mouse_genomes_project 9 53601740 53611631 + Peak1os antisense antisense MGP_AJ_T0100311.1 MGP_AJ_G0038277.1 mouse_genomes_project 9 109144283 109144346 + Gm26409 snRNA snRNA MGP_AJ_T0098496.1 MGP_AJ_G0036480.1 mouse_genomes_project 9 108090491 108093670 + pseudogene pseudogene MGP_AJ_T0092716.1 MGP_AJ_G0034877.1 mouse_genomes_project 9 56294663 56458636 - MGP_AJ_P0092716 Neo1 protein_coding protein_coding MGP_AJ_T0092717.1 MGP_AJ_G0034877.1 mouse_genomes_project 9 56294667 56458323 - MGP_AJ_P0092717 Neo1 protein_coding unknown_likely_coding MGP_AJ_T0005544.1 MGP_AJ_G0004677.1 mouse_genomes_project 9 107130842 107404188 + antisense antisense MGP_AJ_T0093246.1 MGP_AJ_G0035001.1 mouse_genomes_project 9 70603765 70618396 + MGP_AJ_P0093246 Dyx1c1 protein_coding protein_coding MGP_AJ_T0093247.1 MGP_AJ_G0035001.1 mouse_genomes_project 9 70603765 70618399 + MGP_AJ_P0093247 Dyx1c1 protein_coding protein_coding MGP_AJ_T0092644.1 MGP_AJ_G0034862.1 mouse_genomes_project 9 55336796 55359651 + MGP_AJ_P0092644 Sema7a protein_coding protein_coding MGP_AJ_T0101588.1 MGP_AJ_G0039554.1 mouse_genomes_project 9 99066262 99066389 + Gm24338 snoRNA snoRNA MGP_AJ_T0091882.1 MGP_AJ_G0034566.1 mouse_genomes_project 9 35297989 35298931 + MGP_AJ_P0091882 Olfr893 protein_coding protein_coding MGP_AJ_T0091581.1 MGP_AJ_G0034466.1 mouse_genomes_project 9 19369029 19376802 + MGP_AJ_P0091581 Gm17545 protein_coding protein_coding MGP_AJ_T0093087.1 MGP_AJ_G0034972.1 mouse_genomes_project 9 67057365 67060852 - MGP_AJ_P0093087 Gm4978 protein_coding protein_coding MGP_AJ_T0093013.1 MGP_AJ_G0034957.1 mouse_genomes_project 9 64067946 64148071 - MGP_AJ_P0093013 Usp3 protein_coding protein_coding MGP_AJ_T0093014.1 MGP_AJ_G0034957.1 mouse_genomes_project 9 64069668 64147929 - MGP_AJ_P0093014 Usp3 protein_coding nonsense_mediated_decay MGP_AJ_T0093015.1 MGP_AJ_G0034957.1 mouse_genomes_project 9 64070661 64147965 - MGP_AJ_P0093015 Usp3 protein_coding protein_coding MGP_AJ_T0093016.1 MGP_AJ_G0034957.1 mouse_genomes_project 9 64071311 64147887 - Usp3 protein_coding retained_intron MGP_AJ_T0093017.1 MGP_AJ_G0034957.1 mouse_genomes_project 9 64071509 64147935 - MGP_AJ_P0093017 Usp3 protein_coding protein_coding MGP_AJ_T0093018.1 MGP_AJ_G0034957.1 mouse_genomes_project 9 64071683 64073763 - Usp3 protein_coding retained_intron MGP_AJ_T0093019.1 MGP_AJ_G0034957.1 mouse_genomes_project 9 64071842 64074244 - Usp3 protein_coding retained_intron MGP_AJ_T0093020.1 MGP_AJ_G0034957.1 mouse_genomes_project 9 64080084 64083826 - Usp3 protein_coding retained_intron MGP_AJ_T0093021.1 MGP_AJ_G0034957.1 mouse_genomes_project 9 64080399 64094823 - Usp3 protein_coding processed_transcript MGP_AJ_T0093022.1 MGP_AJ_G0034957.1 mouse_genomes_project 9 64099934 64121444 - Usp3 protein_coding retained_intron MGP_AJ_T0093023.1 MGP_AJ_G0034957.1 mouse_genomes_project 9 64102339 64130980 - Usp3 protein_coding processed_transcript MGP_AJ_T0016099.1 MGP_AJ_G0014194.1 mouse_genomes_project 9 74569393 74569691 - processed_pseudogene processed_pseudogene MGP_AJ_T0093841.1 MGP_AJ_G0035133.1 mouse_genomes_project 9 95247232 95841893 - MGP_AJ_P0093841 Clstn2 protein_coding protein_coding MGP_AJ_T0093842.1 MGP_AJ_G0035133.1 mouse_genomes_project 9 95256096 95841695 - MGP_AJ_P0093842 Clstn2 protein_coding protein_coding MGP_AJ_T0002437.1 MGP_AJ_G0002346.1 mouse_genomes_project 9 99815726 99816774 + TEC TEC MGP_AJ_T0092116.1 MGP_AJ_G0034690.1 mouse_genomes_project 9 41698832 41706673 - MGP_AJ_P0092116 Ccdc84 protein_coding protein_coding MGP_AJ_T0091702.1 MGP_AJ_G0034504.1 mouse_genomes_project 9 29612569 29708716 + Ets1 protein_coding retained_intron MGP_AJ_T0091703.1 MGP_AJ_G0034504.1 mouse_genomes_project 9 29612587 29627806 + Ets1 protein_coding retained_intron MGP_AJ_T0091704.1 MGP_AJ_G0034504.1 mouse_genomes_project 9 29674210 29733869 + MGP_AJ_P0091704 Ets1 protein_coding protein_coding MGP_AJ_T0091705.1 MGP_AJ_G0034504.1 mouse_genomes_project 9 29674545 29736683 + MGP_AJ_P0091705 Ets1 protein_coding protein_coding MGP_AJ_T0091706.1 MGP_AJ_G0034504.1 mouse_genomes_project 9 29674545 29733295 + MGP_AJ_P0091706 Ets1 protein_coding protein_coding MGP_AJ_T0093088.1 MGP_AJ_G0034973.1 mouse_genomes_project 9 67060716 67098823 + MGP_AJ_P0093088 Anxa2 protein_coding protein_coding MGP_AJ_T0093089.1 MGP_AJ_G0034973.1 mouse_genomes_project 9 67060812 67092279 + MGP_AJ_P0093089 Anxa2 protein_coding protein_coding MGP_AJ_T0093090.1 MGP_AJ_G0034973.1 mouse_genomes_project 9 67061162 67090881 + MGP_AJ_P0093090 Anxa2 protein_coding protein_coding MGP_AJ_T0093091.1 MGP_AJ_G0034973.1 mouse_genomes_project 9 67085491 67098823 + Anxa2 protein_coding retained_intron MGP_AJ_T0093092.1 MGP_AJ_G0034973.1 mouse_genomes_project 9 67087137 67098541 + MGP_AJ_P0093092 Anxa2 protein_coding protein_coding MGP_AJ_T0093093.1 MGP_AJ_G0034973.1 mouse_genomes_project 9 67093804 67095130 + Anxa2 protein_coding retained_intron MGP_AJ_T0094110.1 MGP_AJ_G0035194.1 mouse_genomes_project 9 103257608 103264355 + protein_coding retained_intron MGP_AJ_T0094111.1 MGP_AJ_G0035194.1 mouse_genomes_project 9 103257623 103267630 + protein_coding retained_intron MGP_AJ_T0094112.1 MGP_AJ_G0035194.1 mouse_genomes_project 9 103257752 103263825 + MGP_AJ_P0094112 protein_coding protein_coding MGP_AJ_T0094113.1 MGP_AJ_G0035194.1 mouse_genomes_project 9 103257762 103267477 + MGP_AJ_P0094113 protein_coding unknown_likely_coding MGP_AJ_T0094114.1 MGP_AJ_G0035194.1 mouse_genomes_project 9 103259428 103267336 + MGP_AJ_P0094114 protein_coding protein_coding MGP_AJ_T0094115.1 MGP_AJ_G0035194.1 mouse_genomes_project 9 103260026 103267491 + MGP_AJ_P0094115 protein_coding nonsense_mediated_decay MGP_AJ_T0094116.1 MGP_AJ_G0035194.1 mouse_genomes_project 9 103260026 103272742 + MGP_AJ_P0094116 protein_coding nonsense_mediated_decay MGP_AJ_T0094117.1 MGP_AJ_G0035194.1 mouse_genomes_project 9 103263002 103267491 + protein_coding processed_transcript MGP_AJ_T0094118.1 MGP_AJ_G0035194.1 mouse_genomes_project 9 103263686 103267921 + MGP_AJ_P0094118 protein_coding protein_coding MGP_AJ_T0005425.1 MGP_AJ_G0004595.1 mouse_genomes_project 9 31888602 31899898 - Kirrel3os antisense antisense MGP_AJ_T0093613.1 MGP_AJ_G0035088.1 mouse_genomes_project 9 86136107 86198655 - MGP_AJ_P0093613 Snx14 protein_coding protein_coding MGP_AJ_T0093614.1 MGP_AJ_G0035088.1 mouse_genomes_project 9 86136109 86157587 - Snx14 protein_coding retained_intron MGP_AJ_T0093615.1 MGP_AJ_G0035088.1 mouse_genomes_project 9 86136109 86198602 - MGP_AJ_P0093615 Snx14 protein_coding protein_coding MGP_AJ_T0093616.1 MGP_AJ_G0035088.1 mouse_genomes_project 9 86136121 86198662 - MGP_AJ_P0093616 Snx14 protein_coding protein_coding MGP_AJ_T0093617.1 MGP_AJ_G0035088.1 mouse_genomes_project 9 86136124 86198618 - MGP_AJ_P0093617 Snx14 protein_coding protein_coding MGP_AJ_T0093618.1 MGP_AJ_G0035088.1 mouse_genomes_project 9 86140924 86198633 - MGP_AJ_P0093618 Snx14 protein_coding nonsense_mediated_decay MGP_AJ_T0093619.1 MGP_AJ_G0035088.1 mouse_genomes_project 9 86151029 86153462 - Snx14 protein_coding retained_intron MGP_AJ_T0093621.1 MGP_AJ_G0035088.1 mouse_genomes_project 9 86179313 86198616 - Snx14 protein_coding retained_intron MGP_AJ_T0101533.1 MGP_AJ_G0039499.1 mouse_genomes_project 9 12229894 12229965 + Gm24299 snoRNA snoRNA MGP_AJ_T0100270.1 MGP_AJ_G0038236.1 mouse_genomes_project 9 48276029 48276135 + Gm25558 snRNA snRNA MGP_AJ_T0011053.1 MGP_AJ_G0009175.1 mouse_genomes_project 9 38837656 38837733 + Mir125b-1 miRNA miRNA MGP_AJ_T0101562.1 MGP_AJ_G0039528.1 mouse_genomes_project 9 61692362 61692430 + Gm23344 snoRNA snoRNA MGP_AJ_T0091936.1 MGP_AJ_G0034614.1 mouse_genomes_project 9 36667669 36677990 - MGP_AJ_P0091936 Olfr44 protein_coding protein_coding MGP_AJ_T0092055.1 MGP_AJ_G0034671.1 mouse_genomes_project 9 41387360 41394819 + MGP_AJ_P0092055 Mfrp protein_coding protein_coding MGP_AJ_T0092056.1 MGP_AJ_G0034671.1 mouse_genomes_project 9 41387369 41392151 + MGP_AJ_P0092056 Mfrp protein_coding nonsense_mediated_decay MGP_AJ_T0092057.1 MGP_AJ_G0034671.1 mouse_genomes_project 9 41387385 41394816 + MGP_AJ_P0092057 Mfrp protein_coding protein_coding MGP_AJ_T0092058.1 MGP_AJ_G0034671.1 mouse_genomes_project 9 41387401 41394816 + MGP_AJ_P0092058 Mfrp protein_coding protein_coding MGP_AJ_T0092059.1 MGP_AJ_G0034671.1 mouse_genomes_project 9 41387419 41388929 + MGP_AJ_P0092059 Mfrp protein_coding nonsense_mediated_decay MGP_AJ_T0092060.1 MGP_AJ_G0034671.1 mouse_genomes_project 9 41390807 41392053 + MGP_AJ_P0092060 Mfrp protein_coding protein_coding MGP_AJ_T0091967.1 MGP_AJ_G0034639.1 mouse_genomes_project 9 37270491 37271457 + MGP_AJ_P0091967 Olfr982 protein_coding protein_coding MGP_AJ_T0002396.1 MGP_AJ_G0002306.1 mouse_genomes_project 9 83518491 83519843 + TEC TEC MGP_AJ_T0092260.1 MGP_AJ_G0034731.1 mouse_genomes_project 9 43586700 43589464 + MGP_AJ_P0092260 Apoa4 protein_coding protein_coding MGP_AJ_T0095312.1 MGP_AJ_G0035414.1 mouse_genomes_project 9 118366857 118386341 + MGP_AJ_P0095312 Mobp protein_coding protein_coding MGP_AJ_T0095313.1 MGP_AJ_G0035414.1 mouse_genomes_project 9 118366857 118393050 + MGP_AJ_P0095313 Mobp protein_coding protein_coding MGP_AJ_T0095314.1 MGP_AJ_G0035414.1 mouse_genomes_project 9 118366857 118398443 + MGP_AJ_P0095314 Mobp protein_coding nonsense_mediated_decay MGP_AJ_T0095315.1 MGP_AJ_G0035414.1 mouse_genomes_project 9 118366857 118393050 + MGP_AJ_P0095315 Mobp protein_coding protein_coding MGP_AJ_T0092930.1 MGP_AJ_G0034934.1 mouse_genomes_project 9 62882325 62895389 + MGP_AJ_P0092930 Pdcd7 protein_coding protein_coding MGP_AJ_T0092778.1 MGP_AJ_G0034892.1 mouse_genomes_project 9 58277706 58365567 + MGP_AJ_P0092778 Uaca protein_coding protein_coding MGP_AJ_T0092779.1 MGP_AJ_G0034892.1 mouse_genomes_project 9 58277767 58365561 + MGP_AJ_P0092779 Uaca protein_coding unknown_likely_coding MGP_AJ_T0091881.1 MGP_AJ_G0034565.1 mouse_genomes_project 9 35272794 35273745 - MGP_AJ_P0091881 Olfr891 protein_coding protein_coding MGP_AJ_T0016105.1 MGP_AJ_G0014200.1 mouse_genomes_project 9 76169513 76170080 - processed_pseudogene processed_pseudogene MGP_AJ_T0011739.1 MGP_AJ_G0009861.1 mouse_genomes_project 9 74476844 74477137 - Gm23791 misc_RNA misc_RNA MGP_AJ_T0011066.1 MGP_AJ_G0009188.1 mouse_genomes_project 9 52046451 52046520 + Mir5710 miRNA miRNA MGP_AJ_T0092926.1 MGP_AJ_G0034933.1 mouse_genomes_project 9 62830917 62866834 + MGP_AJ_P0092926 Clpx protein_coding protein_coding MGP_AJ_T0092927.1 MGP_AJ_G0034933.1 mouse_genomes_project 9 62830952 62866835 + MGP_AJ_P0092927 Clpx protein_coding protein_coding MGP_AJ_T0092928.1 MGP_AJ_G0034933.1 mouse_genomes_project 9 62830989 62845876 + Clpx protein_coding retained_intron MGP_AJ_T0092929.1 MGP_AJ_G0034933.1 mouse_genomes_project 9 62846781 62855183 + MGP_AJ_P0092929 Clpx protein_coding protein_coding MGP_AJ_T0091972.1 MGP_AJ_G0034644.1 mouse_genomes_project 9 37380140 37381156 + MGP_AJ_P0091972 Olfr986 protein_coding protein_coding MGP_AJ_T0093577.1 MGP_AJ_G0035078.1 mouse_genomes_project 9 84356859 84359602 + MGP_AJ_P0093577 Rwdd2a protein_coding protein_coding MGP_AJ_T0093578.1 MGP_AJ_G0035078.1 mouse_genomes_project 9 84356884 84359768 + MGP_AJ_P0093578 Rwdd2a protein_coding protein_coding MGP_AJ_T0093579.1 MGP_AJ_G0035078.1 mouse_genomes_project 9 84356921 84359709 + MGP_AJ_P0093579 Rwdd2a protein_coding protein_coding MGP_AJ_T0009256.1 MGP_AJ_G0007438.1 mouse_genomes_project 9 58173178 58175853 + B930082K07Rik lincRNA lincRNA MGP_AJ_T0091717.1 MGP_AJ_G0034507.1 mouse_genomes_project 9 32075467 32126967 - MGP_AJ_P0091717 Dcps protein_coding protein_coding MGP_AJ_T0091718.1 MGP_AJ_G0034507.1 mouse_genomes_project 9 32075471 32126965 - MGP_AJ_P0091718 Dcps protein_coding protein_coding MGP_AJ_T0091719.1 MGP_AJ_G0034507.1 mouse_genomes_project 9 32077366 32126899 - MGP_AJ_P0091719 Dcps protein_coding nonsense_mediated_decay MGP_AJ_T0002443.1 MGP_AJ_G0002352.1 mouse_genomes_project 9 101271419 101273627 + TEC TEC MGP_AJ_T0095270.1 MGP_AJ_G0035398.1 mouse_genomes_project 9 117559217 117562294 + MGP_AJ_P0095270 protein_coding protein_coding MGP_AJ_T0095272.1 MGP_AJ_G0035398.1 mouse_genomes_project 9 117560588 117567202 + MGP_AJ_P0095272 protein_coding protein_coding MGP_AJ_T0095273.1 MGP_AJ_G0035398.1 mouse_genomes_project 9 117560835 117570288 + MGP_AJ_P0095273 protein_coding protein_coding MGP_AJ_T0095274.1 MGP_AJ_G0035398.1 mouse_genomes_project 9 117560955 117570287 + protein_coding retained_intron MGP_AJ_T0095275.1 MGP_AJ_G0035398.1 mouse_genomes_project 9 117561056 117569452 + MGP_AJ_P0095275 protein_coding protein_coding MGP_AJ_T0095276.1 MGP_AJ_G0035398.1 mouse_genomes_project 9 117561056 117569452 + MGP_AJ_P0095276 protein_coding protein_coding MGP_AJ_T0095277.1 MGP_AJ_G0035398.1 mouse_genomes_project 9 117565464 117569800 + protein_coding retained_intron MGP_AJ_T0095278.1 MGP_AJ_G0035398.1 mouse_genomes_project 9 117565846 117570157 + MGP_AJ_P0095278 protein_coding unknown_likely_coding MGP_AJ_T0095279.1 MGP_AJ_G0035398.1 mouse_genomes_project 9 117569549 117570009 + protein_coding retained_intron MGP_AJ_T0093729.1 MGP_AJ_G0035115.1 mouse_genomes_project 9 93224947 93282713 - MGP_AJ_P0093729 U2surp protein_coding protein_coding MGP_AJ_T0093730.1 MGP_AJ_G0035115.1 mouse_genomes_project 9 93229023 93282815 - MGP_AJ_P0093730 U2surp protein_coding protein_coding MGP_AJ_T0093731.1 MGP_AJ_G0035115.1 mouse_genomes_project 9 93229404 93282814 - MGP_AJ_P0093731 U2surp protein_coding nonsense_mediated_decay MGP_AJ_T0093732.1 MGP_AJ_G0035115.1 mouse_genomes_project 9 93229455 93282680 - MGP_AJ_P0093732 U2surp protein_coding unknown_likely_coding MGP_AJ_T0093733.1 MGP_AJ_G0035115.1 mouse_genomes_project 9 93248032 93252244 - U2surp protein_coding retained_intron MGP_AJ_T0093734.1 MGP_AJ_G0035115.1 mouse_genomes_project 9 93263915 93282678 - MGP_AJ_P0093734 U2surp protein_coding protein_coding MGP_AJ_T0093735.1 MGP_AJ_G0035115.1 mouse_genomes_project 9 93264533 93282675 - MGP_AJ_P0093735 U2surp protein_coding protein_coding MGP_AJ_T0093736.1 MGP_AJ_G0035115.1 mouse_genomes_project 9 93272785 93282704 - U2surp protein_coding retained_intron MGP_AJ_T0093737.1 MGP_AJ_G0035115.1 mouse_genomes_project 9 93279852 93282698 - U2surp protein_coding retained_intron MGP_AJ_T0101596.1 MGP_AJ_G0039562.1 mouse_genomes_project 9 108175451 108175589 - Gm23377 snoRNA snoRNA MGP_AJ_T0091626.1 MGP_AJ_G0034479.1 mouse_genomes_project 9 23725347 23774965 - MGP_AJ_P0091626 Glb1l3 protein_coding protein_coding MGP_AJ_T0093647.1 MGP_AJ_G0035097.1 mouse_genomes_project 9 87488644 87494505 - MGP_AJ_P0093647 Tmed3 protein_coding protein_coding MGP_AJ_T0093648.1 MGP_AJ_G0035097.1 mouse_genomes_project 9 87492682 87494260 - Tmed3 protein_coding retained_intron MGP_AJ_T0091280.1 MGP_AJ_G0034331.1 mouse_genomes_project 9 11647731 11651395 - MGP_AJ_P0091280 Fut4 protein_coding protein_coding MGP_AJ_T0091856.1 MGP_AJ_G0034546.1 mouse_genomes_project 9 34583721 34588773 + MGP_AJ_P0091856 Vsig2 protein_coding protein_coding MGP_AJ_T0092720.1 MGP_AJ_G0034880.1 mouse_genomes_project 9 56847974 56947472 - MGP_AJ_P0092720 Arih1 protein_coding protein_coding MGP_AJ_T0092721.1 MGP_AJ_G0034880.1 mouse_genomes_project 9 56852829 56947476 - MGP_AJ_P0092721 Arih1 protein_coding nonsense_mediated_decay MGP_AJ_T0092722.1 MGP_AJ_G0034880.1 mouse_genomes_project 9 56853010 56947205 - MGP_AJ_P0092722 Arih1 protein_coding protein_coding MGP_AJ_T0092723.1 MGP_AJ_G0034880.1 mouse_genomes_project 9 56854730 56865892 - MGP_AJ_P0092723 Arih1 protein_coding nonsense_mediated_decay MGP_AJ_T0092724.1 MGP_AJ_G0034880.1 mouse_genomes_project 9 56854815 56866145 - Arih1 protein_coding retained_intron MGP_AJ_T0092725.1 MGP_AJ_G0034880.1 mouse_genomes_project 9 56886242 56946914 - Arih1 protein_coding retained_intron MGP_AJ_T0092726.1 MGP_AJ_G0034880.1 mouse_genomes_project 9 56897176 56946941 - Arih1 protein_coding retained_intron MGP_AJ_T0092182.1 MGP_AJ_G0034708.1 mouse_genomes_project 9 42366452 42378979 + MGP_AJ_P0092182 Mpzl2 protein_coding protein_coding MGP_AJ_T0016053.1 MGP_AJ_G0014148.1 mouse_genomes_project 9 29605465 29605883 + processed_pseudogene processed_pseudogene MGP_AJ_T0011747.1 MGP_AJ_G0009869.1 mouse_genomes_project 9 108162800 108162928 - Gm27855 misc_RNA misc_RNA MGP_AJ_T0091145.1 MGP_AJ_G0034286.1 mouse_genomes_project 9 1185463 1207361 + MGP_AJ_P0091145 Kbtbd3 protein_coding protein_coding MGP_AJ_T0005468.1 MGP_AJ_G0004623.1 mouse_genomes_project 9 67084055 67086625 - Gm16144 antisense antisense MGP_AJ_T0005411.1 MGP_AJ_G0004586.1 mouse_genomes_project 9 11604174 11618591 + Gm10706 antisense antisense MGP_AJ_T0094232.1 MGP_AJ_G0035213.1 mouse_genomes_project 9 104366597 104373219 - MGP_AJ_P0094232 Parp3 protein_coding protein_coding MGP_AJ_T0094233.1 MGP_AJ_G0035213.1 mouse_genomes_project 9 104366904 104372646 - MGP_AJ_P0094233 Parp3 protein_coding protein_coding MGP_AJ_T0094234.1 MGP_AJ_G0035213.1 mouse_genomes_project 9 104367266 104372439 - Parp3 protein_coding retained_intron MGP_AJ_T0094235.1 MGP_AJ_G0035213.1 mouse_genomes_project 9 104367266 104372939 - MGP_AJ_P0094235 Parp3 protein_coding protein_coding MGP_AJ_T0094236.1 MGP_AJ_G0035213.1 mouse_genomes_project 9 104367272 104368300 - Parp3 protein_coding retained_intron MGP_AJ_T0094237.1 MGP_AJ_G0035213.1 mouse_genomes_project 9 104370699 104372374 - MGP_AJ_P0094237 Parp3 protein_coding protein_coding MGP_AJ_T0094238.1 MGP_AJ_G0035213.1 mouse_genomes_project 9 104370906 104372866 - Parp3 protein_coding retained_intron MGP_AJ_T0094239.1 MGP_AJ_G0035213.1 mouse_genomes_project 9 104370936 104372665 - MGP_AJ_P0094239 Parp3 protein_coding protein_coding MGP_AJ_T0091720.1 MGP_AJ_G0034508.1 mouse_genomes_project 9 32135434 32151525 - MGP_AJ_P0091720 Tirap protein_coding protein_coding MGP_AJ_T0091721.1 MGP_AJ_G0034508.1 mouse_genomes_project 9 32138064 32151222 - MGP_AJ_P0091721 Tirap protein_coding protein_coding MGP_AJ_T0091722.1 MGP_AJ_G0034508.1 mouse_genomes_project 9 32138064 32151162 - MGP_AJ_P0091722 Tirap protein_coding protein_coding MGP_AJ_T0091723.1 MGP_AJ_G0034508.1 mouse_genomes_project 9 32138626 32151204 - MGP_AJ_P0091723 Tirap protein_coding protein_coding MGP_AJ_T0091724.1 MGP_AJ_G0034508.1 mouse_genomes_project 9 32140019 32151117 - MGP_AJ_P0091724 Tirap protein_coding protein_coding MGP_AJ_T0091725.1 MGP_AJ_G0034508.1 mouse_genomes_project 9 32140316 32142691 - MGP_AJ_P0091725 Tirap protein_coding protein_coding MGP_AJ_T0091726.1 MGP_AJ_G0034508.1 mouse_genomes_project 9 32142327 32150733 - MGP_AJ_P0091726 Tirap protein_coding protein_coding MGP_AJ_T0091163.1 MGP_AJ_G0034292.1 mouse_genomes_project 9 3101257 3323371 + MGP_AJ_P0091163 Pdgfd protein_coding protein_coding MGP_AJ_T0091164.1 MGP_AJ_G0034292.1 mouse_genomes_project 9 3101306 3324695 + MGP_AJ_P0091164 Pdgfd protein_coding protein_coding MGP_AJ_T0092932.1 MGP_AJ_G0034936.1 mouse_genomes_project 9 62924794 62927763 - MGP_AJ_P0092932 Kbtbd13 protein_coding protein_coding MGP_AJ_T0091918.1 MGP_AJ_G0034596.1 mouse_genomes_project 9 36025615 36036926 + MGP_AJ_P0091918 Olfr924 protein_coding protein_coding MGP_AJ_T0093539.1 MGP_AJ_G0035072.1 mouse_genomes_project 9 83087124 83094026 - MGP_AJ_P0093539 Fam46a protein_coding protein_coding MGP_AJ_T0093540.1 MGP_AJ_G0035072.1 mouse_genomes_project 9 83087124 83093802 - MGP_AJ_P0093540 Fam46a protein_coding protein_coding MGP_AJ_T0091953.1 MGP_AJ_G0034625.1 mouse_genomes_project 9 36949765 36950704 + MGP_AJ_P0091953 Olfr150 protein_coding protein_coding MGP_AJ_T0091619.1 MGP_AJ_G0034478.1 mouse_genomes_project 9 23669976 23713713 - MGP_AJ_P0091619 Glb1l2 protein_coding protein_coding MGP_AJ_T0091620.1 MGP_AJ_G0034478.1 mouse_genomes_project 9 23669977 23713749 - MGP_AJ_P0091620 Glb1l2 protein_coding protein_coding MGP_AJ_T0091621.1 MGP_AJ_G0034478.1 mouse_genomes_project 9 23670700 23713702 - MGP_AJ_P0091621 Glb1l2 protein_coding protein_coding MGP_AJ_T0091622.1 MGP_AJ_G0034478.1 mouse_genomes_project 9 23672135 23709826 - MGP_AJ_P0091622 Glb1l2 protein_coding protein_coding MGP_AJ_T0091623.1 MGP_AJ_G0034478.1 mouse_genomes_project 9 23674429 23675403 - Glb1l2 protein_coding retained_intron MGP_AJ_T0091624.1 MGP_AJ_G0034478.1 mouse_genomes_project 9 23681059 23699351 - Glb1l2 protein_coding retained_intron MGP_AJ_T0091625.1 MGP_AJ_G0034478.1 mouse_genomes_project 9 23687793 23713703 - MGP_AJ_P0091625 Glb1l2 protein_coding nonsense_mediated_decay MGP_AJ_T0091940.1 MGP_AJ_G0034618.1 mouse_genomes_project 9 36778506 36795668 - MGP_AJ_P0091940 AW551984 protein_coding protein_coding MGP_AJ_T0091941.1 MGP_AJ_G0034618.1 mouse_genomes_project 9 36778620 36795230 - MGP_AJ_P0091941 AW551984 protein_coding protein_coding MGP_AJ_T0091942.1 MGP_AJ_G0034618.1 mouse_genomes_project 9 36780072 36782096 - AW551984 protein_coding retained_intron MGP_AJ_T0091943.1 MGP_AJ_G0034618.1 mouse_genomes_project 9 36781701 36783346 - AW551984 protein_coding retained_intron MGP_AJ_T0091944.1 MGP_AJ_G0034618.1 mouse_genomes_project 9 36791199 36795947 - MGP_AJ_P0091944 AW551984 protein_coding protein_coding MGP_AJ_T0091945.1 MGP_AJ_G0034618.1 mouse_genomes_project 9 36791836 36795170 - AW551984 protein_coding retained_intron MGP_AJ_T0091946.1 MGP_AJ_G0034618.1 mouse_genomes_project 9 36792097 36794920 - MGP_AJ_P0091946 AW551984 protein_coding protein_coding MGP_AJ_T0094859.1 MGP_AJ_G0035308.1 mouse_genomes_project 9 107073324 107090068 - MGP_AJ_P0094859 Fbxw13 protein_coding protein_coding MGP_AJ_T0094860.1 MGP_AJ_G0035308.1 mouse_genomes_project 9 107073345 107090055 - MGP_AJ_P0094860 Fbxw13 protein_coding nonsense_mediated_decay MGP_AJ_T0094861.1 MGP_AJ_G0035308.1 mouse_genomes_project 9 107075622 107089613 - MGP_AJ_P0094861 Fbxw13 protein_coding protein_coding MGP_AJ_T0002424.1 MGP_AJ_G0002333.1 mouse_genomes_project 9 97053043 97054798 - TEC TEC MGP_AJ_T0091496.1 MGP_AJ_G0034430.1 mouse_genomes_project 9 18302502 18312216 + MGP_AJ_P0091496 Qtrt1 protein_coding protein_coding MGP_AJ_T0091789.1 MGP_AJ_G0034533.1 mouse_genomes_project 9 33724647 33743026 - MGP_AJ_P0091789 Chek1 protein_coding protein_coding MGP_AJ_T0091790.1 MGP_AJ_G0034533.1 mouse_genomes_project 9 33724647 33743310 - MGP_AJ_P0091790 Chek1 protein_coding protein_coding MGP_AJ_T0091791.1 MGP_AJ_G0034533.1 mouse_genomes_project 9 33725675 33743237 - MGP_AJ_P0091791 Chek1 protein_coding nonsense_mediated_decay MGP_AJ_T0091792.1 MGP_AJ_G0034533.1 mouse_genomes_project 9 33726392 33742520 - MGP_AJ_P0091792 Chek1 protein_coding protein_coding MGP_AJ_T0091793.1 MGP_AJ_G0034533.1 mouse_genomes_project 9 33726392 33742520 - MGP_AJ_P0091793 Chek1 protein_coding protein_coding MGP_AJ_T0091794.1 MGP_AJ_G0034533.1 mouse_genomes_project 9 33730084 33739388 - Chek1 protein_coding retained_intron MGP_AJ_T0091795.1 MGP_AJ_G0034533.1 mouse_genomes_project 9 33739291 33743717 - Chek1 protein_coding processed_transcript MGP_AJ_T0091796.1 MGP_AJ_G0034533.1 mouse_genomes_project 9 33740245 33743222 - Chek1 protein_coding retained_intron MGP_AJ_T0091797.1 MGP_AJ_G0034533.1 mouse_genomes_project 9 33740504 33743103 - MGP_AJ_P0091797 Chek1 protein_coding protein_coding MGP_AJ_T0100268.1 MGP_AJ_G0038234.1 mouse_genomes_project 9 44895140 44895247 - Gm22286 snRNA snRNA MGP_AJ_T0091158.1 MGP_AJ_G0034291.1 mouse_genomes_project 9 2214380 2241629 + MGP_AJ_P0091158 Casp12 protein_coding protein_coding MGP_AJ_T0091159.1 MGP_AJ_G0034291.1 mouse_genomes_project 9 2214426 2241478 + MGP_AJ_P0091159 Casp12 protein_coding nonsense_mediated_decay MGP_AJ_T0091160.1 MGP_AJ_G0034291.1 mouse_genomes_project 9 2214429 2222334 + Casp12 protein_coding retained_intron MGP_AJ_T0091161.1 MGP_AJ_G0034291.1 mouse_genomes_project 9 2214446 2223337 + Casp12 protein_coding retained_intron MGP_AJ_T0091162.1 MGP_AJ_G0034291.1 mouse_genomes_project 9 2214454 2227390 + MGP_AJ_P0091162 Casp12 protein_coding protein_coding MGP_AJ_T0018564.1 MGP_AJ_G0015730.1 mouse_genomes_project 9 93413362 93414656 - Gm16127 processed_transcript processed_transcript MGP_AJ_T0005509.1 MGP_AJ_G0004650.1 mouse_genomes_project 9 95812184 95814534 + 4921534H16Rik antisense antisense MGP_AJ_T0005510.1 MGP_AJ_G0004650.1 mouse_genomes_project 9 95812184 95820937 + 4921534H16Rik antisense antisense MGP_AJ_T0002422.1 MGP_AJ_G0002331.1 mouse_genomes_project 9 96287444 96288624 + TEC TEC MGP_AJ_T0091272.1 MGP_AJ_G0034329.1 mouse_genomes_project 9 11447044 11512425 - MGP_AJ_P0091272 Amotl1 protein_coding protein_coding MGP_AJ_T0091273.1 MGP_AJ_G0034329.1 mouse_genomes_project 9 11455010 11458389 - Amotl1 protein_coding retained_intron MGP_AJ_T0091274.1 MGP_AJ_G0034329.1 mouse_genomes_project 9 11491487 11513126 - MGP_AJ_P0091274 Amotl1 protein_coding protein_coding MGP_AJ_T0091275.1 MGP_AJ_G0034329.1 mouse_genomes_project 9 11491521 11512229 - MGP_AJ_P0091275 Amotl1 protein_coding protein_coding MGP_AJ_T0018500.1 MGP_AJ_G0015709.1 mouse_genomes_project 9 18111021 18118420 + Gm16754 processed_transcript antisense MGP_AJ_T0018501.1 MGP_AJ_G0015709.1 mouse_genomes_project 9 18111021 18112100 + Gm16754 processed_transcript retained_intron MGP_AJ_T0018502.1 MGP_AJ_G0015709.1 mouse_genomes_project 9 18111053 18118827 + Gm16754 processed_transcript antisense MGP_AJ_T0093728.1 MGP_AJ_G0035114.1 mouse_genomes_project 9 93167405 93174625 - MGP_AJ_P0093728 Chst2 protein_coding protein_coding MGP_AJ_T0011732.1 MGP_AJ_G0009854.1 mouse_genomes_project 9 15482218 15482524 + Gm25295 misc_RNA misc_RNA MGP_AJ_T0016043.1 MGP_AJ_G0014138.1 mouse_genomes_project 9 9828469 9829454 + processed_pseudogene processed_pseudogene MGP_AJ_T0091300.1 MGP_AJ_G0034337.1 mouse_genomes_project 9 11906020 11949689 - MGP_AJ_P0091300 Panx1 protein_coding protein_coding MGP_AJ_T0091301.1 MGP_AJ_G0034337.1 mouse_genomes_project 9 11906022 11950130 - MGP_AJ_P0091301 Panx1 protein_coding nonsense_mediated_decay MGP_AJ_T0091302.1 MGP_AJ_G0034337.1 mouse_genomes_project 9 11908155 11910746 - Panx1 protein_coding retained_intron MGP_AJ_T0011095.1 MGP_AJ_G0009217.1 mouse_genomes_project 9 106484551 106484625 + Mir191 miRNA miRNA MGP_AJ_T0101601.1 MGP_AJ_G0039567.1 mouse_genomes_project 9 118346152 118346308 + Gm24044 snoRNA snoRNA MGP_AJ_T0092780.1 MGP_AJ_G0034893.1 mouse_genomes_project 9 58304888 58321192 - MGP_AJ_P0092780 Gm9869 protein_coding protein_coding MGP_AJ_T0091281.1 MGP_AJ_G0034332.1 mouse_genomes_project 9 11655843 11661110 - MGP_AJ_P0091281 1700012B09Rik protein_coding nonsense_mediated_decay MGP_AJ_T0091282.1 MGP_AJ_G0034332.1 mouse_genomes_project 9 11655849 11670464 - MGP_AJ_P0091282 1700012B09Rik protein_coding nonsense_mediated_decay MGP_AJ_T0091283.1 MGP_AJ_G0034332.1 mouse_genomes_project 9 11655851 11661066 - MGP_AJ_P0091283 1700012B09Rik protein_coding nonsense_mediated_decay MGP_AJ_T0091284.1 MGP_AJ_G0034332.1 mouse_genomes_project 9 11657447 11670481 - MGP_AJ_P0091284 1700012B09Rik protein_coding protein_coding MGP_AJ_T0091285.1 MGP_AJ_G0034332.1 mouse_genomes_project 9 11657447 11670464 - MGP_AJ_P0091285 1700012B09Rik protein_coding protein_coding MGP_AJ_T0091326.1 MGP_AJ_G0034345.1 mouse_genomes_project 9 12477587 12544993 - MGP_AJ_P0091326 Ccdc67 protein_coding protein_coding MGP_AJ_T0091327.1 MGP_AJ_G0034345.1 mouse_genomes_project 9 12477593 12546919 - MGP_AJ_P0091327 Ccdc67 protein_coding protein_coding MGP_AJ_T0091328.1 MGP_AJ_G0034345.1 mouse_genomes_project 9 12478275 12546889 - MGP_AJ_P0091328 Ccdc67 protein_coding protein_coding MGP_AJ_T0091329.1 MGP_AJ_G0034345.1 mouse_genomes_project 9 12493567 12506411 - Ccdc67 protein_coding processed_transcript MGP_AJ_T0091330.1 MGP_AJ_G0034345.1 mouse_genomes_project 9 12502492 12546900 - MGP_AJ_P0091330 Ccdc67 protein_coding protein_coding MGP_AJ_T0093292.1 MGP_AJ_G0035012.1 mouse_genomes_project 9 72509201 72539132 + MGP_AJ_P0093292 Onecut1 protein_coding protein_coding MGP_AJ_T0093293.1 MGP_AJ_G0035012.1 mouse_genomes_project 9 72513752 72537711 + Onecut1 protein_coding processed_transcript MGP_AJ_T0016069.1 MGP_AJ_G0014164.1 mouse_genomes_project 9 52645924 52647017 + processed_pseudogene processed_pseudogene MGP_AJ_T0093502.1 MGP_AJ_G0035066.1 mouse_genomes_project 9 80864808 80865686 - Hmgn3 protein_coding processed_transcript MGP_AJ_T0093503.1 MGP_AJ_G0035066.1 mouse_genomes_project 9 80864808 80901631 - MGP_AJ_P0093503 Hmgn3 protein_coding protein_coding MGP_AJ_T0093504.1 MGP_AJ_G0035066.1 mouse_genomes_project 9 80864808 80901416 - MGP_AJ_P0093504 Hmgn3 protein_coding protein_coding MGP_AJ_T0093505.1 MGP_AJ_G0035066.1 mouse_genomes_project 9 80864808 80901476 - MGP_AJ_P0093505 Hmgn3 protein_coding protein_coding MGP_AJ_T0093506.1 MGP_AJ_G0035066.1 mouse_genomes_project 9 80864808 80901551 - MGP_AJ_P0093506 Hmgn3 protein_coding protein_coding MGP_AJ_T0093507.1 MGP_AJ_G0035066.1 mouse_genomes_project 9 80864828 80865992 - Hmgn3 protein_coding retained_intron MGP_AJ_T0093508.1 MGP_AJ_G0035066.1 mouse_genomes_project 9 80865041 80867430 - Hmgn3 protein_coding retained_intron MGP_AJ_T0093509.1 MGP_AJ_G0035066.1 mouse_genomes_project 9 80865238 80901463 - MGP_AJ_P0093509 Hmgn3 protein_coding nonsense_mediated_decay MGP_AJ_T0093510.1 MGP_AJ_G0035066.1 mouse_genomes_project 9 80865580 80865954 - Hmgn3 protein_coding retained_intron MGP_AJ_T0011101.1 MGP_AJ_G0009223.1 mouse_genomes_project 9 108696409 108696526 - Mir8107 miRNA miRNA MGP_AJ_T0092736.1 MGP_AJ_G0034885.1 mouse_genomes_project 9 57147992 57184535 + MGP_AJ_P0092736 Gramd2 protein_coding protein_coding MGP_AJ_T0092737.1 MGP_AJ_G0034885.1 mouse_genomes_project 9 57178248 57189206 + MGP_AJ_P0092737 Gramd2 protein_coding protein_coding MGP_AJ_T0092738.1 MGP_AJ_G0034885.1 mouse_genomes_project 9 57178375 57187036 + MGP_AJ_P0092738 Gramd2 protein_coding protein_coding MGP_AJ_T0092739.1 MGP_AJ_G0034885.1 mouse_genomes_project 9 57180768 57184453 + Gramd2 protein_coding retained_intron MGP_AJ_T0092740.1 MGP_AJ_G0034885.1 mouse_genomes_project 9 57181792 57186926 + MGP_AJ_P0092740 Gramd2 protein_coding protein_coding MGP_AJ_T0092741.1 MGP_AJ_G0034885.1 mouse_genomes_project 9 57184727 57189206 + Gramd2 protein_coding retained_intron MGP_AJ_T0092921.1 MGP_AJ_G0034930.1 mouse_genomes_project 9 62670243 62714667 + MGP_AJ_P0092921 Igdcc3 protein_coding protein_coding MGP_AJ_T0092922.1 MGP_AJ_G0034930.1 mouse_genomes_project 9 62670504 62714144 + MGP_AJ_P0092922 Igdcc3 protein_coding unknown_likely_coding MGP_AJ_T0091544.1 MGP_AJ_G0034444.1 mouse_genomes_project 9 18819949 18826401 - MGP_AJ_P0091544 Tmem205 protein_coding protein_coding MGP_AJ_T0091545.1 MGP_AJ_G0034444.1 mouse_genomes_project 9 18819949 18826401 - MGP_AJ_P0091545 Tmem205 protein_coding protein_coding MGP_AJ_T0016128.1 MGP_AJ_G0014223.1 mouse_genomes_project 9 88011436 88011760 - processed_pseudogene processed_pseudogene MGP_AJ_T0100281.1 MGP_AJ_G0038247.1 mouse_genomes_project 9 64674828 64674976 + Gm22145 snRNA snRNA MGP_AJ_T0095151.1 MGP_AJ_G0035358.1 mouse_genomes_project 9 111548483 111558297 - MGP_AJ_P0095151 unknown_likely_coding unknown_likely_coding MGP_AJ_T0002429.1 MGP_AJ_G0002338.1 mouse_genomes_project 9 98724775 98727803 + TEC TEC MGP_AJ_T0092691.1 MGP_AJ_G0034869.1 mouse_genomes_project 9 55664721 55675656 + MGP_AJ_P0092691 Stoml1 protein_coding protein_coding MGP_AJ_T0091851.1 MGP_AJ_G0034545.1 mouse_genomes_project 9 34572510 34582786 + MGP_AJ_P0091851 Esam protein_coding protein_coding MGP_AJ_T0091852.1 MGP_AJ_G0034545.1 mouse_genomes_project 9 34573213 34581581 + MGP_AJ_P0091852 Esam protein_coding protein_coding MGP_AJ_T0091853.1 MGP_AJ_G0034545.1 mouse_genomes_project 9 34574682 34576074 + MGP_AJ_P0091853 Esam protein_coding protein_coding MGP_AJ_T0091854.1 MGP_AJ_G0034545.1 mouse_genomes_project 9 34575356 34578668 + MGP_AJ_P0091854 Esam protein_coding protein_coding MGP_AJ_T0091855.1 MGP_AJ_G0034545.1 mouse_genomes_project 9 34580718 34581959 + Esam protein_coding retained_intron MGP_AJ_T0092315.1 MGP_AJ_G0034753.1 mouse_genomes_project 9 46800055 46812148 - MGP_AJ_P0092315 Ankk1 protein_coding protein_coding MGP_AJ_T0092294.1 MGP_AJ_G0034742.1 mouse_genomes_project 9 45866550 45873161 - MGP_AJ_P0092294 Rbm7 protein_coding protein_coding MGP_AJ_T0101563.1 MGP_AJ_G0039529.1 mouse_genomes_project 9 61692737 61692836 + Snord16a snoRNA snoRNA MGP_AJ_T0002444.1 MGP_AJ_G0002353.1 mouse_genomes_project 9 101284273 101284591 + TEC TEC MGP_AJ_T0016068.1 MGP_AJ_G0014163.1 mouse_genomes_project 9 47573471 47574370 - processed_pseudogene processed_pseudogene MGP_AJ_T0101569.1 MGP_AJ_G0039535.1 mouse_genomes_project 9 65863364 65863494 + Gm22382 snoRNA snoRNA MGP_AJ_T0101885.1 MGP_AJ_G0039758.1 mouse_genomes_project 9 107875670 107880766 - transcribed_processed_pseudogene processed_transcript MGP_AJ_T0101886.1 MGP_AJ_G0039758.1 mouse_genomes_project 9 107877903 107880770 - transcribed_processed_pseudogene processed_transcript MGP_AJ_T0101887.1 MGP_AJ_G0039758.1 mouse_genomes_project 9 107878101 107879102 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0002361.1 MGP_AJ_G0002271.1 mouse_genomes_project 9 55975360 55976391 + TEC TEC MGP_AJ_T0016165.1 MGP_AJ_G0014260.1 mouse_genomes_project 9 101249865 101250242 + processed_pseudogene processed_pseudogene MGP_AJ_T0093704.1 MGP_AJ_G0035106.1 mouse_genomes_project 9 90013248 90031192 + MGP_AJ_P0093704 Plscr5 protein_coding protein_coding MGP_AJ_T0092477.1 MGP_AJ_G0034805.1 mouse_genomes_project 9 51876303 51882339 + MGP_AJ_P0092477 Sh2d7 protein_coding protein_coding MGP_AJ_T0092478.1 MGP_AJ_G0034805.1 mouse_genomes_project 9 51876307 51880973 + MGP_AJ_P0092478 Sh2d7 protein_coding protein_coding MGP_AJ_T0016062.1 MGP_AJ_G0014157.1 mouse_genomes_project 9 35277749 35278784 + processed_pseudogene processed_pseudogene MGP_AJ_T0009272.1 MGP_AJ_G0007449.1 mouse_genomes_project 9 70153333 70168115 - 4930509E16Rik lincRNA lincRNA MGP_AJ_T0100255.1 MGP_AJ_G0038221.1 mouse_genomes_project 9 17132242 17132338 - Gm25425 snRNA snRNA MGP_AJ_T0095001.1 MGP_AJ_G0035332.1 mouse_genomes_project 9 108681539 108684857 - MGP_AJ_P0095001 Nradd protein_coding protein_coding MGP_AJ_T0095002.1 MGP_AJ_G0035332.1 mouse_genomes_project 9 108681912 108683727 - MGP_AJ_P0095002 Nradd protein_coding protein_coding MGP_AJ_T0095003.1 MGP_AJ_G0035332.1 mouse_genomes_project 9 108682289 108684783 - MGP_AJ_P0095003 Nradd protein_coding protein_coding MGP_AJ_T0095004.1 MGP_AJ_G0035332.1 mouse_genomes_project 9 108682984 108684836 - Nradd protein_coding retained_intron MGP_AJ_T0009316.1 MGP_AJ_G0007483.1 mouse_genomes_project 9 94868286 94874997 + Gm26767 lincRNA lincRNA MGP_AJ_T0005427.1 MGP_AJ_G0004597.1 mouse_genomes_project 9 34046520 34051463 + Gm3896 antisense antisense MGP_AJ_T0091561.1 MGP_AJ_G0034454.1 mouse_genomes_project 9 18976110 18989904 - MGP_AJ_P0091561 Ecsit protein_coding protein_coding MGP_AJ_T0091562.1 MGP_AJ_G0034454.1 mouse_genomes_project 9 18976110 18989915 - MGP_AJ_P0091562 Ecsit protein_coding protein_coding MGP_AJ_T0091563.1 MGP_AJ_G0034454.1 mouse_genomes_project 9 18976110 18989879 - MGP_AJ_P0091563 Ecsit protein_coding protein_coding MGP_AJ_T0091564.1 MGP_AJ_G0034454.1 mouse_genomes_project 9 18977348 18989904 - MGP_AJ_P0091564 Ecsit protein_coding protein_coding MGP_AJ_T0002454.1 MGP_AJ_G0002363.1 mouse_genomes_project 9 105528950 105530694 - TEC TEC MGP_AJ_T0093069.1 MGP_AJ_G0034969.1 mouse_genomes_project 9 65428780 65574568 + MGP_AJ_P0093069 Vps13c protein_coding unknown_likely_coding MGP_AJ_T0093070.1 MGP_AJ_G0034969.1 mouse_genomes_project 9 65428783 65583921 + MGP_AJ_P0093070 Vps13c protein_coding protein_coding MGP_AJ_T0005420.1 MGP_AJ_G0004590.1 mouse_genomes_project 9 21226126 21230245 - Gm15600 antisense antisense MGP_AJ_T0091973.1 MGP_AJ_G0034645.1 mouse_genomes_project 9 37385718 37407473 + MGP_AJ_P0091973 Zfp202 protein_coding nonsense_mediated_decay MGP_AJ_T0091974.1 MGP_AJ_G0034645.1 mouse_genomes_project 9 37385780 37405738 + MGP_AJ_P0091974 Zfp202 protein_coding protein_coding MGP_AJ_T0091899.1 MGP_AJ_G0034583.1 mouse_genomes_project 9 35695583 35700861 + MGP_AJ_P0091899 Olfr912 protein_coding protein_coding MGP_AJ_T0005470.1 MGP_AJ_G0004625.1 mouse_genomes_project 9 69994687 70043920 - BC065403 antisense antisense MGP_AJ_T0005471.1 MGP_AJ_G0004625.1 mouse_genomes_project 9 70042619 70043842 - BC065403 antisense antisense MGP_AJ_T0002366.1 MGP_AJ_G0002276.1 mouse_genomes_project 9 69603680 69605973 - TEC TEC MGP_AJ_T0095477.1 MGP_AJ_G0035465.1 mouse_genomes_project 9 122013291 122018569 + MGP_AJ_P0095477 Cxcr6 protein_coding protein_coding MGP_AJ_T0098749.1 MGP_AJ_G0036733.1 mouse_genomes_project 9 32448631 32448739 - Gm24188 rRNA rRNA MGP_AJ_T0092248.1 MGP_AJ_G0034728.1 mouse_genomes_project 9 43359331 43569965 + MGP_AJ_P0092248 Sik3 protein_coding protein_coding MGP_AJ_T0092249.1 MGP_AJ_G0034728.1 mouse_genomes_project 9 43359375 43568043 + MGP_AJ_P0092249 Sik3 protein_coding protein_coding MGP_AJ_T0092250.1 MGP_AJ_G0034728.1 mouse_genomes_project 9 43359511 43567002 + MGP_AJ_P0092250 Sik3 protein_coding protein_coding MGP_AJ_T0092251.1 MGP_AJ_G0034728.1 mouse_genomes_project 9 43359543 43548578 + MGP_AJ_P0092251 Sik3 protein_coding protein_coding MGP_AJ_T0092252.1 MGP_AJ_G0034728.1 mouse_genomes_project 9 43499190 43569959 + Sik3 protein_coding processed_transcript MGP_AJ_T0092253.1 MGP_AJ_G0034728.1 mouse_genomes_project 9 43565339 43567002 + MGP_AJ_P0092253 Sik3 protein_coding protein_coding MGP_AJ_T0092649.1 MGP_AJ_G0034864.1 mouse_genomes_project 9 55427463 55525249 - MGP_AJ_P0092649 Ccdc33 protein_coding unknown_likely_coding MGP_AJ_T0092650.1 MGP_AJ_G0034864.1 mouse_genomes_project 9 55427470 55508005 - MGP_AJ_P0092650 Ccdc33 protein_coding protein_coding MGP_AJ_T0092651.1 MGP_AJ_G0034864.1 mouse_genomes_project 9 55427471 55525328 - MGP_AJ_P0092651 Ccdc33 protein_coding protein_coding MGP_AJ_T0092652.1 MGP_AJ_G0034864.1 mouse_genomes_project 9 55427475 55507933 - MGP_AJ_P0092652 Ccdc33 protein_coding protein_coding MGP_AJ_T0092653.1 MGP_AJ_G0034864.1 mouse_genomes_project 9 55427512 55435372 - Ccdc33 protein_coding retained_intron MGP_AJ_T0092654.1 MGP_AJ_G0034864.1 mouse_genomes_project 9 55437681 55447027 - Ccdc33 protein_coding processed_transcript MGP_AJ_T0092656.1 MGP_AJ_G0034864.1 mouse_genomes_project 9 55473103 55520868 - Ccdc33 protein_coding processed_transcript MGP_AJ_T0092657.1 MGP_AJ_G0034864.1 mouse_genomes_project 9 55482640 55487692 - Ccdc33 protein_coding retained_intron MGP_AJ_T0092660.1 MGP_AJ_G0034864.1 mouse_genomes_project 9 55491983 55508005 - Ccdc33 protein_coding retained_intron MGP_AJ_T0092661.1 MGP_AJ_G0034864.1 mouse_genomes_project 9 55517513 55525312 - MGP_AJ_P0092661 Ccdc33 protein_coding protein_coding MGP_AJ_T0092564.1 MGP_AJ_G0034832.1 mouse_genomes_project 9 53963977 54031171 - MGP_AJ_P0092564 Lingo1 protein_coding protein_coding MGP_AJ_T0092565.1 MGP_AJ_G0034832.1 mouse_genomes_project 9 53964590 53981143 - MGP_AJ_P0092565 Lingo1 protein_coding protein_coding MGP_AJ_T0092566.1 MGP_AJ_G0034832.1 mouse_genomes_project 9 53964607 53993155 - MGP_AJ_P0092566 Lingo1 protein_coding protein_coding MGP_AJ_T0009269.1 MGP_AJ_G0007446.1 mouse_genomes_project 9 67793014 67821187 - Gm26849 lincRNA lincRNA MGP_AJ_T0091354.1 MGP_AJ_G0034356.1 mouse_genomes_project 9 15381482 15388384 + MGP_AJ_P0091354 Mbd3l1 protein_coding protein_coding MGP_AJ_T0092105.1 MGP_AJ_G0034686.1 mouse_genomes_project 9 41667393 41680239 + MGP_AJ_P0092105 Hyou1 protein_coding protein_coding MGP_AJ_T0092106.1 MGP_AJ_G0034686.1 mouse_genomes_project 9 41667449 41679394 + MGP_AJ_P0092106 Hyou1 protein_coding nonsense_mediated_decay MGP_AJ_T0092107.1 MGP_AJ_G0034686.1 mouse_genomes_project 9 41667460 41678607 + Hyou1 protein_coding retained_intron MGP_AJ_T0092108.1 MGP_AJ_G0034686.1 mouse_genomes_project 9 41667476 41680233 + MGP_AJ_P0092108 Hyou1 protein_coding protein_coding MGP_AJ_T0092109.1 MGP_AJ_G0034686.1 mouse_genomes_project 9 41667487 41673978 + Hyou1 protein_coding retained_intron MGP_AJ_T0092110.1 MGP_AJ_G0034686.1 mouse_genomes_project 9 41667526 41678973 + MGP_AJ_P0092110 Hyou1 protein_coding protein_coding MGP_AJ_T0092111.1 MGP_AJ_G0034686.1 mouse_genomes_project 9 41668432 41672055 + MGP_AJ_P0092111 Hyou1 protein_coding protein_coding MGP_AJ_T0092112.1 MGP_AJ_G0034686.1 mouse_genomes_project 9 41678531 41679183 + Hyou1 protein_coding retained_intron MGP_AJ_T0009227.1 MGP_AJ_G0007414.1 mouse_genomes_project 9 30994714 31012149 + 7630403G23Rik lincRNA lincRNA MGP_AJ_T0098750.1 MGP_AJ_G0036734.1 mouse_genomes_project 9 34057455 34057564 + n-R5s82 rRNA rRNA MGP_AJ_T0091305.1 MGP_AJ_G0034340.1 mouse_genomes_project 9 12175841 12195342 - MGP_AJ_P0091305 Med17 protein_coding protein_coding MGP_AJ_T0094804.1 MGP_AJ_G0035298.1 mouse_genomes_project 9 106865801 106866956 + MGP_AJ_P0094804 Ucn2 protein_coding protein_coding MGP_AJ_T0016084.1 MGP_AJ_G0014179.1 mouse_genomes_project 9 69921805 69922250 + processed_pseudogene processed_pseudogene MGP_AJ_T0093451.1 MGP_AJ_G0035059.1 mouse_genomes_project 9 77856409 77884467 + Senp6 protein_coding retained_intron MGP_AJ_T0093452.1 MGP_AJ_G0035059.1 mouse_genomes_project 9 77856409 77939363 + MGP_AJ_P0093452 Senp6 protein_coding protein_coding MGP_AJ_T0093453.1 MGP_AJ_G0035059.1 mouse_genomes_project 9 77856442 77907955 + MGP_AJ_P0093453 Senp6 protein_coding protein_coding MGP_AJ_T0093454.1 MGP_AJ_G0035059.1 mouse_genomes_project 9 77856605 77939191 + MGP_AJ_P0093454 Senp6 protein_coding nonsense_mediated_decay MGP_AJ_T0093455.1 MGP_AJ_G0035059.1 mouse_genomes_project 9 77857030 77940005 + MGP_AJ_P0093455 Senp6 protein_coding protein_coding MGP_AJ_T0093456.1 MGP_AJ_G0035059.1 mouse_genomes_project 9 77857323 77877499 + Senp6 protein_coding processed_transcript MGP_AJ_T0093457.1 MGP_AJ_G0035059.1 mouse_genomes_project 9 77882281 77916049 + MGP_AJ_P0093457 Senp6 protein_coding protein_coding MGP_AJ_T0093458.1 MGP_AJ_G0035059.1 mouse_genomes_project 9 77893290 77938122 + MGP_AJ_P0093458 Senp6 protein_coding protein_coding MGP_AJ_T0093459.1 MGP_AJ_G0035059.1 mouse_genomes_project 9 77908223 77912948 + MGP_AJ_P0093459 Senp6 protein_coding protein_coding MGP_AJ_T0093460.1 MGP_AJ_G0035059.1 mouse_genomes_project 9 77908240 77916121 + Senp6 protein_coding processed_transcript MGP_AJ_T0093461.1 MGP_AJ_G0035059.1 mouse_genomes_project 9 77917865 77930855 + MGP_AJ_P0093461 Senp6 protein_coding protein_coding MGP_AJ_T0093462.1 MGP_AJ_G0035059.1 mouse_genomes_project 9 77930655 77938581 + Senp6 protein_coding retained_intron MGP_AJ_T0093463.1 MGP_AJ_G0035059.1 mouse_genomes_project 9 77933424 77938119 + Senp6 protein_coding retained_intron MGP_AJ_T0093464.1 MGP_AJ_G0035059.1 mouse_genomes_project 9 77936456 77938415 + Senp6 protein_coding retained_intron MGP_AJ_T0095416.1 MGP_AJ_G0035444.1 mouse_genomes_project 9 121025262 121032291 - MGP_AJ_P0095416 Gm35549 protein_coding protein_coding MGP_AJ_T0095417.1 MGP_AJ_G0035444.1 mouse_genomes_project 9 121025262 121032291 - MGP_AJ_P0095417 Gm35549 protein_coding protein_coding MGP_AJ_T0095418.1 MGP_AJ_G0035444.1 mouse_genomes_project 9 121025262 121032291 - MGP_AJ_P0095418 Gm35549 protein_coding protein_coding MGP_AJ_T0095257.1 MGP_AJ_G0035392.1 mouse_genomes_project 9 117364551 117374031 - MGP_AJ_P0095257 Acaa1b protein_coding unknown_likely_coding MGP_AJ_T0095381.1 MGP_AJ_G0035431.1 mouse_genomes_project 9 119990066 119998556 - MGP_AJ_P0095381 Hhatl protein_coding protein_coding MGP_AJ_T0095382.1 MGP_AJ_G0035431.1 mouse_genomes_project 9 119990072 119997086 - MGP_AJ_P0095382 Hhatl protein_coding protein_coding MGP_AJ_T0095350.1 MGP_AJ_G0035423.1 mouse_genomes_project 9 119690573 119696406 - MGP_AJ_P0095350 Cck protein_coding protein_coding MGP_AJ_T0091598.1 MGP_AJ_G0034470.1 mouse_genomes_project 9 21340015 21416925 - MGP_AJ_P0091598 Dpy19l1 protein_coding protein_coding MGP_AJ_T0091599.1 MGP_AJ_G0034470.1 mouse_genomes_project 9 21340017 21432100 - MGP_AJ_P0091599 Dpy19l1 protein_coding protein_coding MGP_AJ_T0091600.1 MGP_AJ_G0034470.1 mouse_genomes_project 9 21340042 21432100 - MGP_AJ_P0091600 Dpy19l1 protein_coding protein_coding MGP_AJ_T0091601.1 MGP_AJ_G0034470.1 mouse_genomes_project 9 21340290 21352983 - Dpy19l1 protein_coding retained_intron MGP_AJ_T0091602.1 MGP_AJ_G0034470.1 mouse_genomes_project 9 21351312 21355442 - Dpy19l1 protein_coding retained_intron MGP_AJ_T0091603.1 MGP_AJ_G0034470.1 mouse_genomes_project 9 21410987 21426132 - Dpy19l1 protein_coding processed_transcript MGP_AJ_T0093404.1 MGP_AJ_G0035041.1 mouse_genomes_project 9 76009952 76020825 + MGP_AJ_P0093404 protein_coding protein_coding MGP_AJ_T0093406.1 MGP_AJ_G0035041.1 mouse_genomes_project 9 76014550 76019252 + protein_coding processed_transcript MGP_AJ_T0009317.1 MGP_AJ_G0007484.1 mouse_genomes_project 9 95989296 95989923 - 2610303G11Rik lincRNA lincRNA MGP_AJ_T0095442.1 MGP_AJ_G0035453.1 mouse_genomes_project 9 121307408 121330260 + MGP_AJ_P0095442 Exosc7 protein_coding protein_coding MGP_AJ_T0095443.1 MGP_AJ_G0035453.1 mouse_genomes_project 9 121307451 121313843 + Exosc7 protein_coding retained_intron MGP_AJ_T0095444.1 MGP_AJ_G0035453.1 mouse_genomes_project 9 121320521 121325061 + Exosc7 protein_coding processed_transcript MGP_AJ_T0094382.1 MGP_AJ_G0035242.1 mouse_genomes_project 9 105484510 105490721 + MGP_AJ_P0094382 Ifrd2 protein_coding protein_coding MGP_AJ_T0094383.1 MGP_AJ_G0035242.1 mouse_genomes_project 9 105484594 105490721 + Ifrd2 protein_coding retained_intron MGP_AJ_T0094384.1 MGP_AJ_G0035242.1 mouse_genomes_project 9 105484625 105488562 + MGP_AJ_P0094384 Ifrd2 protein_coding nonsense_mediated_decay MGP_AJ_T0094385.1 MGP_AJ_G0035242.1 mouse_genomes_project 9 105487303 105488175 + Ifrd2 protein_coding retained_intron MGP_AJ_T0094386.1 MGP_AJ_G0035242.1 mouse_genomes_project 9 105487974 105490391 + MGP_AJ_P0094386 Ifrd2 protein_coding protein_coding MGP_AJ_T0094387.1 MGP_AJ_G0035242.1 mouse_genomes_project 9 105489767 105490437 + MGP_AJ_P0094387 Ifrd2 protein_coding nonsense_mediated_decay MGP_AJ_T0094388.1 MGP_AJ_G0035242.1 mouse_genomes_project 9 105490309 105491072 + Ifrd2 protein_coding processed_transcript MGP_AJ_T0092559.1 MGP_AJ_G0034830.1 mouse_genomes_project 9 53544088 53588050 - MGP_AJ_P0092559 Peak1 protein_coding protein_coding MGP_AJ_T0092560.1 MGP_AJ_G0034830.1 mouse_genomes_project 9 53548088 53762064 - MGP_AJ_P0092560 Peak1 protein_coding protein_coding MGP_AJ_T0092561.1 MGP_AJ_G0034830.1 mouse_genomes_project 9 53604407 53762039 - MGP_AJ_P0092561 Peak1 protein_coding protein_coding MGP_AJ_T0092562.1 MGP_AJ_G0034830.1 mouse_genomes_project 9 53760697 53762047 - Peak1 protein_coding retained_intron MGP_AJ_T0009271.1 MGP_AJ_G0007448.1 mouse_genomes_project 9 70043242 70043853 + Gm27255 lincRNA lincRNA MGP_AJ_T0095171.1 MGP_AJ_G0035364.1 mouse_genomes_project 9 112124059 112167625 + MGP_AJ_P0095171 Susd5 protein_coding protein_coding MGP_AJ_T0094003.1 MGP_AJ_G0035172.1 mouse_genomes_project 9 100821917 100853977 + Slco2a1 protein_coding processed_transcript MGP_AJ_T0094004.1 MGP_AJ_G0035172.1 mouse_genomes_project 9 100841225 100923586 + MGP_AJ_P0094004 Slco2a1 protein_coding protein_coding MGP_AJ_T0094005.1 MGP_AJ_G0035172.1 mouse_genomes_project 9 100841377 100845117 + Slco2a1 protein_coding retained_intron MGP_AJ_T0094006.1 MGP_AJ_G0035172.1 mouse_genomes_project 9 100841722 100929021 + MGP_AJ_P0094006 Slco2a1 protein_coding nonsense_mediated_decay MGP_AJ_T0002421.1 MGP_AJ_G0002330.1 mouse_genomes_project 9 95735177 95736727 - TEC TEC MGP_AJ_T0016148.1 MGP_AJ_G0014243.1 mouse_genomes_project 9 94598806 94599074 + processed_pseudogene processed_pseudogene MGP_AJ_T0091304.1 MGP_AJ_G0034339.1 mouse_genomes_project 9 12153996 12174883 + MGP_AJ_P0091304 Vstm5 protein_coding protein_coding MGP_AJ_T0009348.1 MGP_AJ_G0007509.1 mouse_genomes_project 9 110297667 110299405 + 2900079G21Rik lincRNA lincRNA MGP_AJ_T0009349.1 MGP_AJ_G0007509.1 mouse_genomes_project 9 110297684 110344524 + 2900079G21Rik lincRNA lincRNA MGP_AJ_T0009350.1 MGP_AJ_G0007509.1 mouse_genomes_project 9 110297771 110299403 + 2900079G21Rik lincRNA lincRNA MGP_AJ_T0009351.1 MGP_AJ_G0007509.1 mouse_genomes_project 9 110319979 110411307 + 2900079G21Rik lincRNA lincRNA MGP_AJ_T0091887.1 MGP_AJ_G0034571.1 mouse_genomes_project 9 35444631 35446219 + MGP_AJ_P0091887 Olfr898 protein_coding protein_coding MGP_AJ_T0011057.1 MGP_AJ_G0009179.1 mouse_genomes_project 9 41688379 41688445 + Mir7085 miRNA miRNA MGP_AJ_T0091268.1 MGP_AJ_G0034326.1 mouse_genomes_project 9 11250319 11277137 - MGP_AJ_P0091268 Endod1 protein_coding protein_coding MGP_AJ_T0092719.1 MGP_AJ_G0034879.1 mouse_genomes_project 9 56748145 56782170 - MGP_AJ_P0092719 Bbs4 protein_coding protein_coding MGP_AJ_T0002462.1 MGP_AJ_G0002371.1 mouse_genomes_project 9 106749000 106749342 + TEC TEC MGP_AJ_T0091901.1 MGP_AJ_G0034585.1 mouse_genomes_project 9 35721659 35722610 + MGP_AJ_P0091901 Olfr914 protein_coding protein_coding MGP_AJ_T0092544.1 MGP_AJ_G0034825.1 mouse_genomes_project 9 52892831 53254826 - MGP_AJ_P0092544 Scaper protein_coding protein_coding MGP_AJ_T0092545.1 MGP_AJ_G0034825.1 mouse_genomes_project 9 53089409 53274096 - MGP_AJ_P0092545 Scaper protein_coding unknown_likely_coding MGP_AJ_T0002404.1 MGP_AJ_G0002313.1 mouse_genomes_project 9 85499998 85501827 - TEC TEC MGP_AJ_T0005492.1 MGP_AJ_G0004641.1 mouse_genomes_project 9 93394880 93424815 - Gm16126 antisense antisense MGP_AJ_T0101573.1 MGP_AJ_G0039539.1 mouse_genomes_project 9 71460511 71460641 - Gm25105 snoRNA snoRNA MGP_AJ_T0093482.1 MGP_AJ_G0035063.1 mouse_genomes_project 9 79606518 79939559 + MGP_AJ_P0093482 Mei4 protein_coding protein_coding MGP_AJ_T0093483.1 MGP_AJ_G0035063.1 mouse_genomes_project 9 79632940 79764941 + MGP_AJ_P0093483 Mei4 protein_coding protein_coding MGP_AJ_T0018498.1 MGP_AJ_G0015707.1 mouse_genomes_project 9 4951252 4962419 + Gm20416 processed_transcript processed_transcript MGP_AJ_T0091957.1 MGP_AJ_G0034629.1 mouse_genomes_project 9 37035592 37036528 + MGP_AJ_P0091957 protein_coding protein_coding MGP_AJ_T0095304.1 MGP_AJ_G0035412.1 mouse_genomes_project 9 118328184 118342218 + MGP_AJ_P0095304 Slc25a38 protein_coding protein_coding MGP_AJ_T0095305.1 MGP_AJ_G0035412.1 mouse_genomes_project 9 118328215 118338522 + MGP_AJ_P0095305 Slc25a38 protein_coding nonsense_mediated_decay MGP_AJ_T0095306.1 MGP_AJ_G0035412.1 mouse_genomes_project 9 118328218 118338151 + Slc25a38 protein_coding processed_transcript MGP_AJ_T0095307.1 MGP_AJ_G0035412.1 mouse_genomes_project 9 118328218 118329408 + Slc25a38 protein_coding processed_transcript MGP_AJ_T0095308.1 MGP_AJ_G0035412.1 mouse_genomes_project 9 118328234 118341365 + MGP_AJ_P0095308 Slc25a38 protein_coding nonsense_mediated_decay MGP_AJ_T0095309.1 MGP_AJ_G0035412.1 mouse_genomes_project 9 118332691 118340041 + MGP_AJ_P0095309 Slc25a38 protein_coding protein_coding MGP_AJ_T0095310.1 MGP_AJ_G0035412.1 mouse_genomes_project 9 118332830 118338126 + Slc25a38 protein_coding processed_transcript MGP_AJ_T0095364.1 MGP_AJ_G0035428.1 mouse_genomes_project 9 119925255 119962968 + MGP_AJ_P0095364 Nktr protein_coding protein_coding MGP_AJ_T0095365.1 MGP_AJ_G0035428.1 mouse_genomes_project 9 119925257 119948755 + MGP_AJ_P0095365 Nktr protein_coding nonsense_mediated_decay MGP_AJ_T0095366.1 MGP_AJ_G0035428.1 mouse_genomes_project 9 119925284 119937682 + MGP_AJ_P0095366 Nktr protein_coding unknown_likely_coding MGP_AJ_T0095367.1 MGP_AJ_G0035428.1 mouse_genomes_project 9 119925294 119947271 + MGP_AJ_P0095367 Nktr protein_coding protein_coding MGP_AJ_T0095368.1 MGP_AJ_G0035428.1 mouse_genomes_project 9 119925296 119936215 + Nktr protein_coding retained_intron MGP_AJ_T0095369.1 MGP_AJ_G0035428.1 mouse_genomes_project 9 119925322 119941647 + Nktr protein_coding retained_intron MGP_AJ_T0095370.1 MGP_AJ_G0035428.1 mouse_genomes_project 9 119925377 119926091 + Nktr protein_coding processed_transcript MGP_AJ_T0095371.1 MGP_AJ_G0035428.1 mouse_genomes_project 9 119925523 119955960 + MGP_AJ_P0095371 Nktr protein_coding protein_coding MGP_AJ_T0095372.1 MGP_AJ_G0035428.1 mouse_genomes_project 9 119925906 119937716 + MGP_AJ_P0095372 Nktr protein_coding protein_coding MGP_AJ_T0095373.1 MGP_AJ_G0035428.1 mouse_genomes_project 9 119935599 119937784 + Nktr protein_coding retained_intron MGP_AJ_T0095374.1 MGP_AJ_G0035428.1 mouse_genomes_project 9 119937347 119948791 + Nktr protein_coding retained_intron MGP_AJ_T0095375.1 MGP_AJ_G0035428.1 mouse_genomes_project 9 119956905 119960516 + MGP_AJ_P0095375 Nktr protein_coding nonsense_mediated_decay MGP_AJ_T0095376.1 MGP_AJ_G0035428.1 mouse_genomes_project 9 119957334 119958767 + Nktr protein_coding retained_intron MGP_AJ_T0095377.1 MGP_AJ_G0035428.1 mouse_genomes_project 9 119957786 119960977 + MGP_AJ_P0095377 Nktr protein_coding protein_coding MGP_AJ_T0095378.1 MGP_AJ_G0035428.1 mouse_genomes_project 9 119958646 119960476 + Nktr protein_coding retained_intron MGP_AJ_T0011080.1 MGP_AJ_G0009202.1 mouse_genomes_project 9 70649998 70650120 + Gm27353 miRNA miRNA MGP_AJ_T0091690.1 MGP_AJ_G0034500.1 mouse_genomes_project 9 29085484 29241519 + MGP_AJ_P0091690 Arhgap32 protein_coding protein_coding MGP_AJ_T0091691.1 MGP_AJ_G0034500.1 mouse_genomes_project 9 29098916 29151808 + MGP_AJ_P0091691 Arhgap32 protein_coding protein_coding MGP_AJ_T0091692.1 MGP_AJ_G0034500.1 mouse_genomes_project 9 29151752 29178121 + Arhgap32 protein_coding retained_intron MGP_AJ_T0091693.1 MGP_AJ_G0034500.1 mouse_genomes_project 9 29177205 29234291 + MGP_AJ_P0091693 Arhgap32 protein_coding protein_coding MGP_AJ_T0091694.1 MGP_AJ_G0034500.1 mouse_genomes_project 9 29196298 29237318 + MGP_AJ_P0091694 Arhgap32 protein_coding protein_coding MGP_AJ_T0091695.1 MGP_AJ_G0034500.1 mouse_genomes_project 9 29196641 29218756 + MGP_AJ_P0091695 Arhgap32 protein_coding protein_coding MGP_AJ_T0091696.1 MGP_AJ_G0034500.1 mouse_genomes_project 9 29217936 29222237 + Arhgap32 protein_coding retained_intron MGP_AJ_T0100273.1 MGP_AJ_G0038239.1 mouse_genomes_project 9 60531687 60531845 + Gm24526 snRNA snRNA MGP_AJ_T0091332.1 MGP_AJ_G0034347.1 mouse_genomes_project 9 12758426 12808393 - MGP_AJ_P0091332 Mtnr1b protein_coding nonsense_mediated_decay MGP_AJ_T0091333.1 MGP_AJ_G0034347.1 mouse_genomes_project 9 12796525 12808297 - MGP_AJ_P0091333 Mtnr1b protein_coding protein_coding MGP_AJ_T0002402.1 MGP_AJ_G0002311.1 mouse_genomes_project 9 84959146 84960224 - TEC TEC MGP_AJ_T0094774.1 MGP_AJ_G0035294.1 mouse_genomes_project 9 106779006 106780007 + Slc26a6 protein_coding processed_transcript MGP_AJ_T0094775.1 MGP_AJ_G0035294.1 mouse_genomes_project 9 106779071 106787868 + MGP_AJ_P0094775 Slc26a6 protein_coding protein_coding MGP_AJ_T0094776.1 MGP_AJ_G0035294.1 mouse_genomes_project 9 106779759 106786553 + MGP_AJ_P0094776 Slc26a6 protein_coding nonsense_mediated_decay MGP_AJ_T0094777.1 MGP_AJ_G0035294.1 mouse_genomes_project 9 106779759 106790097 + MGP_AJ_P0094777 Slc26a6 protein_coding protein_coding MGP_AJ_T0094778.1 MGP_AJ_G0035294.1 mouse_genomes_project 9 106779765 106787868 + MGP_AJ_P0094778 Slc26a6 protein_coding protein_coding MGP_AJ_T0094779.1 MGP_AJ_G0035294.1 mouse_genomes_project 9 106779796 106787868 + Slc26a6 protein_coding retained_intron MGP_AJ_T0094780.1 MGP_AJ_G0035294.1 mouse_genomes_project 9 106779816 106787868 + Slc26a6 protein_coding retained_intron MGP_AJ_T0094781.1 MGP_AJ_G0035294.1 mouse_genomes_project 9 106779857 106787868 + MGP_AJ_P0094781 Slc26a6 protein_coding protein_coding MGP_AJ_T0094782.1 MGP_AJ_G0035294.1 mouse_genomes_project 9 106781385 106787868 + MGP_AJ_P0094782 Slc26a6 protein_coding nonsense_mediated_decay MGP_AJ_T0094783.1 MGP_AJ_G0035294.1 mouse_genomes_project 9 106781547 106790592 + MGP_AJ_P0094783 Slc26a6 protein_coding unknown_likely_coding MGP_AJ_T0094784.1 MGP_AJ_G0035294.1 mouse_genomes_project 9 106789948 106790588 + MGP_AJ_P0094784 Slc26a6 protein_coding protein_coding MGP_AJ_T0093095.1 MGP_AJ_G0034975.1 mouse_genomes_project 9 67608103 67626988 + MGP_AJ_P0093095 Bnip2 protein_coding protein_coding MGP_AJ_T0093096.1 MGP_AJ_G0034975.1 mouse_genomes_project 9 67608141 67626926 + MGP_AJ_P0093096 Bnip2 protein_coding protein_coding MGP_AJ_T0093097.1 MGP_AJ_G0034975.1 mouse_genomes_project 9 67608152 67622636 + MGP_AJ_P0093097 Bnip2 protein_coding protein_coding MGP_AJ_T0093098.1 MGP_AJ_G0034975.1 mouse_genomes_project 9 67608154 67617790 + MGP_AJ_P0093098 Bnip2 protein_coding nonsense_mediated_decay MGP_AJ_T0093099.1 MGP_AJ_G0034975.1 mouse_genomes_project 9 67614054 67625786 + MGP_AJ_P0093099 Bnip2 protein_coding protein_coding MGP_AJ_T0093100.1 MGP_AJ_G0034975.1 mouse_genomes_project 9 67615807 67620868 + Bnip2 protein_coding retained_intron MGP_AJ_T0093101.1 MGP_AJ_G0034975.1 mouse_genomes_project 9 67616863 67622266 + Bnip2 protein_coding processed_transcript MGP_AJ_T0093102.1 MGP_AJ_G0034975.1 mouse_genomes_project 9 67622007 67623392 + MGP_AJ_P0093102 Bnip2 protein_coding protein_coding MGP_AJ_T0091958.1 MGP_AJ_G0034630.1 mouse_genomes_project 9 37055255 37056179 + MGP_AJ_P0091958 Olfr971 protein_coding protein_coding MGP_AJ_T0092088.1 MGP_AJ_G0034678.1 mouse_genomes_project 9 41543206 41558517 - MGP_AJ_P0092088 Nlrx1 protein_coding unknown_likely_coding MGP_AJ_T0092415.1 MGP_AJ_G0034781.1 mouse_genomes_project 9 48687063 48727449 - MGP_AJ_P0092415 1810046K07Rik protein_coding protein_coding MGP_AJ_T0092416.1 MGP_AJ_G0034781.1 mouse_genomes_project 9 48687821 48711201 - MGP_AJ_P0092416 1810046K07Rik protein_coding protein_coding MGP_AJ_T0098758.1 MGP_AJ_G0036742.1 mouse_genomes_project 9 94340442 94340558 - n-R5s87 rRNA rRNA MGP_AJ_T0091905.1 MGP_AJ_G0034589.1 mouse_genomes_project 9 35845817 35846878 - MGP_AJ_P0091905 Olfr919 protein_coding protein_coding MGP_AJ_T0092181.1 MGP_AJ_G0034707.1 mouse_genomes_project 9 42317506 42328633 - MGP_AJ_P0092181 Cd3e protein_coding protein_coding MGP_AJ_T0091392.1 MGP_AJ_G0034394.1 mouse_genomes_project 9 17192959 17203295 - MGP_AJ_P0091392 Olfr18 protein_coding protein_coding MGP_AJ_T0091546.1 MGP_AJ_G0034445.1 mouse_genomes_project 9 18826336 18835806 + MGP_AJ_P0091546 Ccdc159 protein_coding protein_coding MGP_AJ_T0091547.1 MGP_AJ_G0034445.1 mouse_genomes_project 9 18826336 18835806 + MGP_AJ_P0091547 Ccdc159 protein_coding protein_coding MGP_AJ_T0100253.1 MGP_AJ_G0038219.1 mouse_genomes_project 9 17061983 17062136 + Gm25914 snRNA snRNA MGP_AJ_T0091438.1 MGP_AJ_G0034403.1 mouse_genomes_project 9 17531172 17592821 - MGP_AJ_P0091438 Olfm2 protein_coding unknown_likely_coding MGP_AJ_T0091439.1 MGP_AJ_G0034403.1 mouse_genomes_project 9 17531470 17594260 - MGP_AJ_P0091439 Olfm2 protein_coding protein_coding MGP_AJ_T0101561.1 MGP_AJ_G0039527.1 mouse_genomes_project 9 57903558 57903681 + Gm22099 snoRNA snoRNA MGP_AJ_T0092031.1 MGP_AJ_G0034660.1 mouse_genomes_project 9 40232761 40378357 - MGP_AJ_P0092031 Arhgef12 protein_coding protein_coding MGP_AJ_T0092032.1 MGP_AJ_G0034660.1 mouse_genomes_project 9 40232762 40378125 - MGP_AJ_P0092032 Arhgef12 protein_coding protein_coding MGP_AJ_T0011043.1 MGP_AJ_G0009165.1 mouse_genomes_project 9 17955793 17955885 - Mir7082 miRNA miRNA MGP_AJ_T0098759.1 MGP_AJ_G0036743.1 mouse_genomes_project 9 99961287 99961405 + n-R5s88 rRNA rRNA MGP_AJ_T0094980.1 MGP_AJ_G0035329.1 mouse_genomes_project 9 108483856 108535711 - MGP_AJ_P0094980 Klhl18 protein_coding protein_coding MGP_AJ_T0094981.1 MGP_AJ_G0035329.1 mouse_genomes_project 9 108483864 108535707 - MGP_AJ_P0094981 Klhl18 protein_coding nonsense_mediated_decay MGP_AJ_T0094982.1 MGP_AJ_G0035329.1 mouse_genomes_project 9 108483864 108535806 - MGP_AJ_P0094982 Klhl18 protein_coding protein_coding MGP_AJ_T0094983.1 MGP_AJ_G0035329.1 mouse_genomes_project 9 108489505 108491368 - Klhl18 protein_coding retained_intron MGP_AJ_T0094984.1 MGP_AJ_G0035329.1 mouse_genomes_project 9 108494967 108513763 - MGP_AJ_P0094984 Klhl18 protein_coding protein_coding MGP_AJ_T0094985.1 MGP_AJ_G0035329.1 mouse_genomes_project 9 108496186 108505154 - Klhl18 protein_coding retained_intron MGP_AJ_T0094190.1 MGP_AJ_G0035207.1 mouse_genomes_project 9 104264473 104272190 + MGP_AJ_P0094190 Dusp7 protein_coding protein_coding MGP_AJ_T0094191.1 MGP_AJ_G0035207.1 mouse_genomes_project 9 104265450 104266707 + Dusp7 protein_coding processed_transcript MGP_AJ_T0094192.1 MGP_AJ_G0035207.1 mouse_genomes_project 9 104266575 104269696 + MGP_AJ_P0094192 Dusp7 protein_coding protein_coding MGP_AJ_T0094193.1 MGP_AJ_G0035207.1 mouse_genomes_project 9 104270470 104272187 + Dusp7 protein_coding processed_transcript MGP_AJ_T0011076.1 MGP_AJ_G0009198.1 mouse_genomes_project 9 67064056 67064144 + Mir3109 miRNA miRNA MGP_AJ_T0091350.1 MGP_AJ_G0034355.1 mouse_genomes_project 9 15356537 15381367 - MGP_AJ_P0091350 Zfp558 protein_coding nonsense_mediated_decay MGP_AJ_T0091351.1 MGP_AJ_G0034355.1 mouse_genomes_project 9 15357154 15376663 - MGP_AJ_P0091351 Zfp558 protein_coding protein_coding MGP_AJ_T0091352.1 MGP_AJ_G0034355.1 mouse_genomes_project 9 15360619 15381372 - Zfp558 protein_coding processed_transcript MGP_AJ_T0091353.1 MGP_AJ_G0034355.1 mouse_genomes_project 9 15375993 15376526 - Zfp558 protein_coding processed_transcript MGP_AJ_T0016184.1 MGP_AJ_G0014279.1 mouse_genomes_project 9 118602793 118603220 + processed_pseudogene processed_pseudogene MGP_AJ_T0092917.1 MGP_AJ_G0034928.1 mouse_genomes_project 9 62561189 62611776 + MGP_AJ_P0092917 Dpp8 protein_coding protein_coding MGP_AJ_T0092918.1 MGP_AJ_G0034928.1 mouse_genomes_project 9 62561453 62610116 + MGP_AJ_P0092918 Dpp8 protein_coding protein_coding MGP_AJ_T0016082.1 MGP_AJ_G0014177.1 mouse_genomes_project 9 69746846 69747651 + processed_pseudogene processed_pseudogene MGP_AJ_T0092214.1 MGP_AJ_G0034722.1 mouse_genomes_project 9 43183155 43208946 + MGP_AJ_P0092214 Bace1 protein_coding protein_coding MGP_AJ_T0092215.1 MGP_AJ_G0034722.1 mouse_genomes_project 9 43183155 43207053 + MGP_AJ_P0092215 Bace1 protein_coding protein_coding MGP_AJ_T0092216.1 MGP_AJ_G0034722.1 mouse_genomes_project 9 43183815 43201746 + MGP_AJ_P0092216 Bace1 protein_coding nonsense_mediated_decay MGP_AJ_T0092217.1 MGP_AJ_G0034722.1 mouse_genomes_project 9 43184496 43199288 + Bace1 protein_coding processed_transcript MGP_AJ_T0092218.1 MGP_AJ_G0034722.1 mouse_genomes_project 9 43197303 43206788 + Bace1 protein_coding retained_intron MGP_AJ_T0092219.1 MGP_AJ_G0034722.1 mouse_genomes_project 9 43199207 43204931 + MGP_AJ_P0092219 Bace1 protein_coding protein_coding MGP_AJ_T0093929.1 MGP_AJ_G0035159.1 mouse_genomes_project 9 98394164 98413113 - MGP_AJ_P0093929 Slc35g2 protein_coding protein_coding MGP_AJ_T0093930.1 MGP_AJ_G0035159.1 mouse_genomes_project 9 98394166 98394892 - Slc35g2 protein_coding processed_transcript MGP_AJ_T0092233.1 MGP_AJ_G0034726.1 mouse_genomes_project 9 43282704 43299870 - MGP_AJ_P0092233 Sidt2 protein_coding protein_coding MGP_AJ_T0092234.1 MGP_AJ_G0034726.1 mouse_genomes_project 9 43282722 43299600 - MGP_AJ_P0092234 Sidt2 protein_coding protein_coding MGP_AJ_T0092235.1 MGP_AJ_G0034726.1 mouse_genomes_project 9 43284152 43286246 - MGP_AJ_P0092235 Sidt2 protein_coding protein_coding MGP_AJ_T0092236.1 MGP_AJ_G0034726.1 mouse_genomes_project 9 43287183 43289293 - Sidt2 protein_coding retained_intron MGP_AJ_T0092237.1 MGP_AJ_G0034726.1 mouse_genomes_project 9 43287611 43289695 - Sidt2 protein_coding retained_intron MGP_AJ_T0092238.1 MGP_AJ_G0034726.1 mouse_genomes_project 9 43288433 43291449 - MGP_AJ_P0092238 Sidt2 protein_coding nonsense_mediated_decay MGP_AJ_T0092239.1 MGP_AJ_G0034726.1 mouse_genomes_project 9 43289035 43292453 - Sidt2 protein_coding retained_intron MGP_AJ_T0092240.1 MGP_AJ_G0034726.1 mouse_genomes_project 9 43289864 43292917 - MGP_AJ_P0092240 Sidt2 protein_coding protein_coding MGP_AJ_T0092241.1 MGP_AJ_G0034726.1 mouse_genomes_project 9 43289952 43299804 - MGP_AJ_P0092241 Sidt2 protein_coding protein_coding MGP_AJ_T0092242.1 MGP_AJ_G0034726.1 mouse_genomes_project 9 43290014 43296454 - MGP_AJ_P0092242 Sidt2 protein_coding protein_coding MGP_AJ_T0092243.1 MGP_AJ_G0034726.1 mouse_genomes_project 9 43290330 43296395 - MGP_AJ_P0092243 Sidt2 protein_coding protein_coding MGP_AJ_T0092244.1 MGP_AJ_G0034726.1 mouse_genomes_project 9 43290367 43296627 - MGP_AJ_P0092244 Sidt2 protein_coding nonsense_mediated_decay MGP_AJ_T0092245.1 MGP_AJ_G0034726.1 mouse_genomes_project 9 43290402 43292969 - MGP_AJ_P0092245 Sidt2 protein_coding protein_coding MGP_AJ_T0092246.1 MGP_AJ_G0034726.1 mouse_genomes_project 9 43297063 43299857 - Sidt2 protein_coding retained_intron MGP_AJ_T0094643.1 MGP_AJ_G0035278.1 mouse_genomes_project 9 106372637 106378049 + MGP_AJ_P0094643 Ccdc71 protein_coding protein_coding MGP_AJ_T0094644.1 MGP_AJ_G0035278.1 mouse_genomes_project 9 106372645 106375378 + MGP_AJ_P0094644 Ccdc71 protein_coding protein_coding MGP_AJ_T0094645.1 MGP_AJ_G0035278.1 mouse_genomes_project 9 106373530 106377917 + MGP_AJ_P0094645 Ccdc71 protein_coding protein_coding MGP_AJ_T0091937.1 MGP_AJ_G0034615.1 mouse_genomes_project 9 36694796 36695732 - MGP_AJ_P0091937 Olfr957 protein_coding protein_coding MGP_AJ_T0100256.1 MGP_AJ_G0038222.1 mouse_genomes_project 9 17339634 17339748 + Gm23316 snRNA snRNA MGP_AJ_T0011038.1 MGP_AJ_G0009160.1 mouse_genomes_project 9 12230662 12230729 + miRNA miRNA MGP_AJ_T0091638.1 MGP_AJ_G0034485.1 mouse_genomes_project 9 24018231 24077197 - MGP_AJ_P0091638 Jam3 protein_coding protein_coding MGP_AJ_T0091639.1 MGP_AJ_G0034485.1 mouse_genomes_project 9 24021514 24077194 - MGP_AJ_P0091639 Jam3 protein_coding protein_coding MGP_AJ_T0101594.1 MGP_AJ_G0039560.1 mouse_genomes_project 9 106340773 106340882 - Gm25456 snoRNA snoRNA MGP_AJ_T0009267.1 MGP_AJ_G0007445.1 mouse_genomes_project 9 67371260 67446866 + B230323A14Rik lincRNA lincRNA MGP_AJ_T0009268.1 MGP_AJ_G0007445.1 mouse_genomes_project 9 67373656 67446220 + B230323A14Rik lincRNA lincRNA MGP_AJ_T0091664.1 MGP_AJ_G0034491.1 mouse_genomes_project 9 27853713 27876946 - MGP_AJ_P0091664 Adamts15 protein_coding protein_coding MGP_AJ_T0091805.1 MGP_AJ_G0034535.1 mouse_genomes_project 9 33798115 33816761 - MGP_AJ_P0091805 Ei24 protein_coding protein_coding MGP_AJ_T0091806.1 MGP_AJ_G0034535.1 mouse_genomes_project 9 33798115 33816678 - MGP_AJ_P0091806 Ei24 protein_coding protein_coding MGP_AJ_T0091807.1 MGP_AJ_G0034535.1 mouse_genomes_project 9 33798834 33802196 - Ei24 protein_coding retained_intron MGP_AJ_T0091808.1 MGP_AJ_G0034535.1 mouse_genomes_project 9 33799131 33801701 - Ei24 protein_coding retained_intron MGP_AJ_T0091809.1 MGP_AJ_G0034535.1 mouse_genomes_project 9 33801764 33805119 - Ei24 protein_coding retained_intron MGP_AJ_T0091810.1 MGP_AJ_G0034535.1 mouse_genomes_project 9 33804710 33816425 - MGP_AJ_P0091810 Ei24 protein_coding protein_coding MGP_AJ_T0091811.1 MGP_AJ_G0034535.1 mouse_genomes_project 9 33804719 33809671 - MGP_AJ_P0091811 Ei24 protein_coding protein_coding MGP_AJ_T0091812.1 MGP_AJ_G0034535.1 mouse_genomes_project 9 33805628 33816766 - MGP_AJ_P0091812 Ei24 protein_coding nonsense_mediated_decay MGP_AJ_T0091559.1 MGP_AJ_G0034453.1 mouse_genomes_project 9 18959324 18975210 - MGP_AJ_P0091559 Zfp653 protein_coding protein_coding MGP_AJ_T0091560.1 MGP_AJ_G0034453.1 mouse_genomes_project 9 18959324 18975210 - MGP_AJ_P0091560 Zfp653 protein_coding protein_coding MGP_AJ_T0092840.1 MGP_AJ_G0034909.1 mouse_genomes_project 9 60901712 60906093 - 2300009A05Rik protein_coding processed_transcript MGP_AJ_T0092841.1 MGP_AJ_G0034909.1 mouse_genomes_project 9 60901712 60906507 - MGP_AJ_P0092841 2300009A05Rik protein_coding protein_coding MGP_AJ_T0092842.1 MGP_AJ_G0034909.1 mouse_genomes_project 9 60901713 60906093 - 2300009A05Rik protein_coding processed_transcript MGP_AJ_T0092843.1 MGP_AJ_G0034909.1 mouse_genomes_project 9 60904742 60906512 - 2300009A05Rik protein_coding retained_intron MGP_AJ_T0002369.1 MGP_AJ_G0002279.1 mouse_genomes_project 9 69654795 69657471 - TEC TEC MGP_AJ_T0094795.1 MGP_AJ_G0035297.1 mouse_genomes_project 9 106833430 106864703 + MGP_AJ_P0094795 Col7a1 protein_coding protein_coding MGP_AJ_T0094796.1 MGP_AJ_G0035297.1 mouse_genomes_project 9 106833589 106864707 + MGP_AJ_P0094796 Col7a1 protein_coding unknown_likely_coding MGP_AJ_T0094797.1 MGP_AJ_G0035297.1 mouse_genomes_project 9 106833589 106864703 + MGP_AJ_P0094797 Col7a1 protein_coding protein_coding MGP_AJ_T0094798.1 MGP_AJ_G0035297.1 mouse_genomes_project 9 106834331 106835261 + Col7a1 protein_coding retained_intron MGP_AJ_T0094799.1 MGP_AJ_G0035297.1 mouse_genomes_project 9 106847493 106848172 + Col7a1 protein_coding retained_intron MGP_AJ_T0094800.1 MGP_AJ_G0035297.1 mouse_genomes_project 9 106849522 106860043 + Col7a1 protein_coding retained_intron MGP_AJ_T0094801.1 MGP_AJ_G0035297.1 mouse_genomes_project 9 106855163 106857017 + Col7a1 protein_coding retained_intron MGP_AJ_T0094802.1 MGP_AJ_G0035297.1 mouse_genomes_project 9 106862481 106864331 + Col7a1 protein_coding retained_intron MGP_AJ_T0094803.1 MGP_AJ_G0035297.1 mouse_genomes_project 9 106862714 106863744 + Col7a1 protein_coding retained_intron MGP_AJ_T0011106.1 MGP_AJ_G0009228.1 mouse_genomes_project 9 117248839 117248929 + Mir26a-1 miRNA miRNA MGP_AJ_T0091652.1 MGP_AJ_G0034489.1 mouse_genomes_project 9 25930221 26905769 - MGP_AJ_P0091652 Ntm protein_coding protein_coding MGP_AJ_T0091653.1 MGP_AJ_G0034489.1 mouse_genomes_project 9 25931463 26344677 - MGP_AJ_P0091653 Ntm protein_coding protein_coding MGP_AJ_T0091654.1 MGP_AJ_G0034489.1 mouse_genomes_project 9 25931682 25950269 - MGP_AJ_P0091654 Ntm protein_coding protein_coding MGP_AJ_T0091655.1 MGP_AJ_G0034489.1 mouse_genomes_project 9 25931945 25950269 - MGP_AJ_P0091655 Ntm protein_coding protein_coding MGP_AJ_T0091656.1 MGP_AJ_G0034489.1 mouse_genomes_project 9 25945111 26344209 - MGP_AJ_P0091656 Ntm protein_coding protein_coding MGP_AJ_T0091657.1 MGP_AJ_G0034489.1 mouse_genomes_project 9 25945237 26120732 - Ntm protein_coding processed_transcript MGP_AJ_T0091658.1 MGP_AJ_G0034489.1 mouse_genomes_project 9 25945260 26046157 - Ntm protein_coding processed_transcript MGP_AJ_T0091659.1 MGP_AJ_G0034489.1 mouse_genomes_project 9 25949247 26905770 - Ntm protein_coding retained_intron MGP_AJ_T0091660.1 MGP_AJ_G0034489.1 mouse_genomes_project 9 26111527 26905770 - Ntm protein_coding retained_intron MGP_AJ_T0091661.1 MGP_AJ_G0034489.1 mouse_genomes_project 9 26344060 26905759 - Ntm protein_coding processed_transcript MGP_AJ_T0091662.1 MGP_AJ_G0034489.1 mouse_genomes_project 9 26884141 26905781 - Ntm protein_coding processed_transcript MGP_AJ_T0009322.1 MGP_AJ_G0007489.1 mouse_genomes_project 9 98290296 98291875 + Gm28166 lincRNA lincRNA MGP_AJ_T0094850.1 MGP_AJ_G0035306.1 mouse_genomes_project 9 106967421 106993700 + MGP_AJ_P0094850 protein_coding unknown_likely_coding MGP_AJ_T0094851.1 MGP_AJ_G0035306.1 mouse_genomes_project 9 106969089 106973637 + MGP_AJ_P0094851 protein_coding protein_coding MGP_AJ_T0094852.1 MGP_AJ_G0035306.1 mouse_genomes_project 9 106969847 106973637 + MGP_AJ_P0094852 protein_coding protein_coding MGP_AJ_T0094853.1 MGP_AJ_G0035306.1 mouse_genomes_project 9 106978316 106982663 + MGP_AJ_P0094853 protein_coding protein_coding MGP_AJ_T0094854.1 MGP_AJ_G0035306.1 mouse_genomes_project 9 106978865 106980172 + protein_coding retained_intron MGP_AJ_T0094855.1 MGP_AJ_G0035306.1 mouse_genomes_project 9 106979327 106980296 + protein_coding retained_intron MGP_AJ_T0094856.1 MGP_AJ_G0035306.1 mouse_genomes_project 9 106980158 106982692 + protein_coding retained_intron MGP_AJ_T0094331.1 MGP_AJ_G0035232.1 mouse_genomes_project 9 105430936 105435669 + MGP_AJ_P0094331 Tmem115 protein_coding protein_coding MGP_AJ_T0091994.1 MGP_AJ_G0034649.1 mouse_genomes_project 9 37892509 37981350 + Clmp protein_coding processed_transcript MGP_AJ_T0091995.1 MGP_AJ_G0034649.1 mouse_genomes_project 9 37892560 38018311 + MGP_AJ_P0091995 Clmp protein_coding protein_coding MGP_AJ_T0091996.1 MGP_AJ_G0034649.1 mouse_genomes_project 9 37892583 37981473 + Clmp protein_coding retained_intron MGP_AJ_T0091997.1 MGP_AJ_G0034649.1 mouse_genomes_project 9 38007502 38015477 + Clmp protein_coding processed_transcript MGP_AJ_T0091230.1 MGP_AJ_G0034317.1 mouse_genomes_project 9 6650581 7900885 - MGP_AJ_P0091230 Cntn5 protein_coding protein_coding MGP_AJ_T0091231.1 MGP_AJ_G0034317.1 mouse_genomes_project 9 6650659 7900934 - MGP_AJ_P0091231 Cntn5 protein_coding protein_coding MGP_AJ_T0091232.1 MGP_AJ_G0034317.1 mouse_genomes_project 9 6651053 7403175 - MGP_AJ_P0091232 Cntn5 protein_coding protein_coding MGP_AJ_T0091233.1 MGP_AJ_G0034317.1 mouse_genomes_project 9 6651053 7403175 - MGP_AJ_P0091233 Cntn5 protein_coding protein_coding MGP_AJ_T0091234.1 MGP_AJ_G0034317.1 mouse_genomes_project 9 7629111 7900608 - Cntn5 protein_coding retained_intron MGP_AJ_T0092859.1 MGP_AJ_G0034914.1 mouse_genomes_project 9 61632895 61654423 + MGP_AJ_P0092859 Lctl protein_coding protein_coding MGP_AJ_T0092860.1 MGP_AJ_G0034914.1 mouse_genomes_project 9 61632920 61633884 + Lctl protein_coding retained_intron MGP_AJ_T0092861.1 MGP_AJ_G0034914.1 mouse_genomes_project 9 61632977 61633760 + Lctl protein_coding processed_transcript MGP_AJ_T0092862.1 MGP_AJ_G0034914.1 mouse_genomes_project 9 61633007 61654419 + MGP_AJ_P0092862 Lctl protein_coding nonsense_mediated_decay MGP_AJ_T0092863.1 MGP_AJ_G0034914.1 mouse_genomes_project 9 61637973 61654410 + MGP_AJ_P0092863 Lctl protein_coding protein_coding MGP_AJ_T0092864.1 MGP_AJ_G0034914.1 mouse_genomes_project 9 61638402 61643175 + Lctl protein_coding retained_intron MGP_AJ_T0005545.1 MGP_AJ_G0004678.1 mouse_genomes_project 9 107507208 107523015 + antisense antisense MGP_AJ_T0011737.1 MGP_AJ_G0009859.1 mouse_genomes_project 9 51874508 51874726 + Gm25980 misc_RNA misc_RNA MGP_AJ_T0011083.1 MGP_AJ_G0009205.1 mouse_genomes_project 9 87593174 87593243 - Mir184 miRNA miRNA MGP_AJ_T0091238.1 MGP_AJ_G0034320.1 mouse_genomes_project 9 10269422 10602657 + MGP_AJ_P0091238 protein_coding protein_coding MGP_AJ_T0091240.1 MGP_AJ_G0034320.1 mouse_genomes_project 9 10507816 10605441 + MGP_AJ_P0091240 protein_coding protein_coding MGP_AJ_T0091241.1 MGP_AJ_G0034320.1 mouse_genomes_project 9 10509463 10603396 + MGP_AJ_P0091241 protein_coding protein_coding MGP_AJ_T0091242.1 MGP_AJ_G0034320.1 mouse_genomes_project 9 10550476 10603398 + protein_coding processed_transcript MGP_AJ_T0100254.1 MGP_AJ_G0038220.1 mouse_genomes_project 9 17090147 17090292 - Gm26290 snRNA snRNA MGP_AJ_T0100263.1 MGP_AJ_G0038229.1 mouse_genomes_project 9 41187661 41187766 - Gm23326 snRNA snRNA MGP_AJ_T0002380.1 MGP_AJ_G0002290.1 mouse_genomes_project 9 70518442 70520338 + TEC TEC MGP_AJ_T0093032.1 MGP_AJ_G0034960.1 mouse_genomes_project 9 64355606 64357642 + MGP_AJ_P0093032 Gm10647 protein_coding protein_coding MGP_AJ_T0093103.1 MGP_AJ_G0034976.1 mouse_genomes_project 9 67631302 67641628 + MGP_AJ_P0093103 Gtf2a2 protein_coding protein_coding MGP_AJ_T0093104.1 MGP_AJ_G0034976.1 mouse_genomes_project 9 67631306 67641500 + Gtf2a2 protein_coding retained_intron MGP_AJ_T0093105.1 MGP_AJ_G0034976.1 mouse_genomes_project 9 67631317 67641499 + MGP_AJ_P0093105 Gtf2a2 protein_coding protein_coding MGP_AJ_T0093106.1 MGP_AJ_G0034976.1 mouse_genomes_project 9 67631318 67641500 + MGP_AJ_P0093106 Gtf2a2 protein_coding nonsense_mediated_decay MGP_AJ_T0093107.1 MGP_AJ_G0034976.1 mouse_genomes_project 9 67631320 67641277 + Gtf2a2 protein_coding processed_transcript MGP_AJ_T0093108.1 MGP_AJ_G0034976.1 mouse_genomes_project 9 67631323 67636977 + Gtf2a2 protein_coding retained_intron MGP_AJ_T0093109.1 MGP_AJ_G0034976.1 mouse_genomes_project 9 67631323 67641499 + MGP_AJ_P0093109 Gtf2a2 protein_coding protein_coding MGP_AJ_T0093110.1 MGP_AJ_G0034976.1 mouse_genomes_project 9 67631326 67638230 + MGP_AJ_P0093110 Gtf2a2 protein_coding protein_coding MGP_AJ_T0093111.1 MGP_AJ_G0034976.1 mouse_genomes_project 9 67631331 67638225 + Gtf2a2 protein_coding retained_intron MGP_AJ_T0093112.1 MGP_AJ_G0034976.1 mouse_genomes_project 9 67631336 67634391 + Gtf2a2 protein_coding retained_intron MGP_AJ_T0093113.1 MGP_AJ_G0034976.1 mouse_genomes_project 9 67631347 67638242 + MGP_AJ_P0093113 Gtf2a2 protein_coding protein_coding MGP_AJ_T0093114.1 MGP_AJ_G0034976.1 mouse_genomes_project 9 67631395 67641500 + MGP_AJ_P0093114 Gtf2a2 protein_coding nonsense_mediated_decay MGP_AJ_T0093115.1 MGP_AJ_G0034976.1 mouse_genomes_project 9 67634564 67641499 + Gtf2a2 protein_coding processed_transcript MGP_AJ_T0093116.1 MGP_AJ_G0034976.1 mouse_genomes_project 9 67635571 67638666 + Gtf2a2 protein_coding retained_intron MGP_AJ_T0093117.1 MGP_AJ_G0034976.1 mouse_genomes_project 9 67637803 67641499 + Gtf2a2 protein_coding retained_intron MGP_AJ_T0002439.1 MGP_AJ_G0002348.1 mouse_genomes_project 9 100006027 100010396 + TEC TEC MGP_AJ_T0091913.1 MGP_AJ_G0034591.1 mouse_genomes_project 9 35902370 35906436 + MGP_AJ_P0091913 Olfr920 protein_coding protein_coding MGP_AJ_T0011100.1 MGP_AJ_G0009222.1 mouse_genomes_project 9 108336567 108336690 + Mir6236 miRNA miRNA MGP_AJ_T0093284.1 MGP_AJ_G0035010.1 mouse_genomes_project 9 71145516 71624167 - MGP_AJ_P0093284 Unc13c protein_coding protein_coding MGP_AJ_T0093285.1 MGP_AJ_G0035010.1 mouse_genomes_project 9 71145520 71595010 - MGP_AJ_P0093285 Unc13c protein_coding unknown_likely_coding MGP_AJ_T0093286.1 MGP_AJ_G0035010.1 mouse_genomes_project 9 71146963 71594430 - MGP_AJ_P0093286 Unc13c protein_coding protein_coding MGP_AJ_T0092086.1 MGP_AJ_G0034676.1 mouse_genomes_project 9 41531069 41537801 + MGP_AJ_P0092086 Ccdc153 protein_coding protein_coding MGP_AJ_T0002474.1 MGP_AJ_G0002383.1 mouse_genomes_project 9 118399485 118400119 + TEC TEC MGP_AJ_T0092017.1 MGP_AJ_G0034656.1 mouse_genomes_project 9 39516014 39526124 - MGP_AJ_P0092017 Sc5d protein_coding protein_coding MGP_AJ_T0092018.1 MGP_AJ_G0034656.1 mouse_genomes_project 9 39516507 39526024 - MGP_AJ_P0092018 Sc5d protein_coding protein_coding MGP_AJ_T0091536.1 MGP_AJ_G0034441.1 mouse_genomes_project 9 18703128 18756509 - MGP_AJ_P0091536 Dock6 protein_coding protein_coding MGP_AJ_T0091538.1 MGP_AJ_G0034441.1 mouse_genomes_project 9 18740129 18756462 - MGP_AJ_P0091538 Dock6 protein_coding unknown_likely_coding MGP_AJ_T0005493.1 MGP_AJ_G0004642.1 mouse_genomes_project 9 93636542 93638642 - 1700065D16Rik antisense antisense MGP_AJ_T0005494.1 MGP_AJ_G0004642.1 mouse_genomes_project 9 93636544 93638996 - 1700065D16Rik antisense antisense MGP_AJ_T0005495.1 MGP_AJ_G0004642.1 mouse_genomes_project 9 93636544 93639447 - 1700065D16Rik antisense antisense MGP_AJ_T0005496.1 MGP_AJ_G0004642.1 mouse_genomes_project 9 93636545 93638996 - 1700065D16Rik antisense antisense MGP_AJ_T0005497.1 MGP_AJ_G0004642.1 mouse_genomes_project 9 93636676 93639445 - 1700065D16Rik antisense antisense MGP_AJ_T0092567.1 MGP_AJ_G0034833.1 mouse_genomes_project 9 54202211 54205515 - MGP_AJ_P0092567 Odf3l1 protein_coding protein_coding MGP_AJ_T0091929.1 MGP_AJ_G0034607.1 mouse_genomes_project 9 36386725 36387661 + MGP_AJ_P0091929 Olfr944 protein_coding protein_coding MGP_AJ_T0091464.1 MGP_AJ_G0034418.1 mouse_genomes_project 9 17954464 17973460 - MGP_AJ_P0091464 Raver1 protein_coding protein_coding MGP_AJ_T0092302.1 MGP_AJ_G0034746.1 mouse_genomes_project 9 46282187 46294163 - MGP_AJ_P0092302 Htr3a protein_coding unknown_likely_coding MGP_AJ_T0092303.1 MGP_AJ_G0034746.1 mouse_genomes_project 9 46282194 46294297 - MGP_AJ_P0092303 Htr3a protein_coding protein_coding MGP_AJ_T0093388.1 MGP_AJ_G0035037.1 mouse_genomes_project 9 75777172 75790814 + MGP_AJ_P0093388 Gcm1 protein_coding protein_coding MGP_AJ_T0092727.1 MGP_AJ_G0034881.1 mouse_genomes_project 9 56980630 56988104 - MGP_AJ_P0092727 Tmem202 protein_coding protein_coding MGP_AJ_T0101555.1 MGP_AJ_G0039521.1 mouse_genomes_project 9 39579286 39579418 - Gm26272 snoRNA snoRNA MGP_AJ_T0092101.1 MGP_AJ_G0034682.1 mouse_genomes_project 9 41620241 41628050 + MGP_AJ_P0092101 Dpagt1 protein_coding protein_coding MGP_AJ_T0094093.1 MGP_AJ_G0035190.1 mouse_genomes_project 9 102930225 102956949 + MGP_AJ_P0094093 Mrpl3 protein_coding protein_coding MGP_AJ_T0094094.1 MGP_AJ_G0035190.1 mouse_genomes_project 9 102930225 102953529 + MGP_AJ_P0094094 Mrpl3 protein_coding protein_coding MGP_AJ_T0094095.1 MGP_AJ_G0035190.1 mouse_genomes_project 9 102930256 102938910 + MGP_AJ_P0094095 Mrpl3 protein_coding nonsense_mediated_decay MGP_AJ_T0094096.1 MGP_AJ_G0035190.1 mouse_genomes_project 9 102930256 102932589 + MGP_AJ_P0094096 Mrpl3 protein_coding nonsense_mediated_decay MGP_AJ_T0094097.1 MGP_AJ_G0035190.1 mouse_genomes_project 9 102930287 102954523 + MGP_AJ_P0094097 Mrpl3 protein_coding nonsense_mediated_decay MGP_AJ_T0094098.1 MGP_AJ_G0035190.1 mouse_genomes_project 9 102948176 102951121 + Mrpl3 protein_coding retained_intron MGP_AJ_T0093484.1 MGP_AJ_G0035064.1 mouse_genomes_project 9 80578409 80597428 + MGP_AJ_P0093484 Irak1bp1 protein_coding protein_coding MGP_AJ_T0093485.1 MGP_AJ_G0035064.1 mouse_genomes_project 9 80578675 80596761 + MGP_AJ_P0093485 Irak1bp1 protein_coding protein_coding MGP_AJ_T0091924.1 MGP_AJ_G0034602.1 mouse_genomes_project 9 36171818 36172987 - MGP_AJ_P0091924 Olfr146 protein_coding protein_coding MGP_AJ_T0016137.1 MGP_AJ_G0014232.1 mouse_genomes_project 9 90494158 90494972 + processed_pseudogene processed_pseudogene MGP_AJ_T0092674.1 MGP_AJ_G0034867.1 mouse_genomes_project 9 55605863 55611847 - MGP_AJ_P0092674 Islr2 protein_coding protein_coding MGP_AJ_T0092675.1 MGP_AJ_G0034867.1 mouse_genomes_project 9 55605863 55613887 - MGP_AJ_P0092675 Islr2 protein_coding protein_coding MGP_AJ_T0092676.1 MGP_AJ_G0034867.1 mouse_genomes_project 9 55605863 55612096 - MGP_AJ_P0092676 Islr2 protein_coding protein_coding MGP_AJ_T0092677.1 MGP_AJ_G0034867.1 mouse_genomes_project 9 55605863 55611361 - MGP_AJ_P0092677 Islr2 protein_coding protein_coding MGP_AJ_T0092678.1 MGP_AJ_G0034867.1 mouse_genomes_project 9 55605863 55611281 - MGP_AJ_P0092678 Islr2 protein_coding protein_coding MGP_AJ_T0011041.1 MGP_AJ_G0009163.1 mouse_genomes_project 9 17788717 17788792 - Mir7081 miRNA miRNA MGP_AJ_T0091337.1 MGP_AJ_G0034351.1 mouse_genomes_project 9 15222770 15294253 - MGP_AJ_P0091337 Naalad2 protein_coding protein_coding MGP_AJ_T0091338.1 MGP_AJ_G0034351.1 mouse_genomes_project 9 15223839 15282723 - MGP_AJ_P0091338 Naalad2 protein_coding protein_coding MGP_AJ_T0091339.1 MGP_AJ_G0034351.1 mouse_genomes_project 9 15223840 15288810 - MGP_AJ_P0091339 Naalad2 protein_coding protein_coding MGP_AJ_T0091340.1 MGP_AJ_G0034351.1 mouse_genomes_project 9 15277490 15282609 - Naalad2 protein_coding retained_intron MGP_AJ_T0091341.1 MGP_AJ_G0034351.1 mouse_genomes_project 9 15281744 15300056 - MGP_AJ_P0091341 Naalad2 protein_coding protein_coding MGP_AJ_T0091342.1 MGP_AJ_G0034351.1 mouse_genomes_project 9 15282515 15300058 - MGP_AJ_P0091342 Naalad2 protein_coding protein_coding MGP_AJ_T0091343.1 MGP_AJ_G0034351.1 mouse_genomes_project 9 15284760 15300079 - MGP_AJ_P0091343 Naalad2 protein_coding protein_coding MGP_AJ_T0091344.1 MGP_AJ_G0034351.1 mouse_genomes_project 9 15284866 15300060 - Naalad2 protein_coding processed_transcript MGP_AJ_T0092844.1 MGP_AJ_G0034910.1 mouse_genomes_project 9 60927750 61110133 - MGP_AJ_P0092844 Iqch protein_coding protein_coding MGP_AJ_T0092845.1 MGP_AJ_G0034910.1 mouse_genomes_project 9 60927914 61110088 - MGP_AJ_P0092845 Iqch protein_coding protein_coding MGP_AJ_T0092846.1 MGP_AJ_G0034910.1 mouse_genomes_project 9 60927914 61110088 - MGP_AJ_P0092846 Iqch protein_coding protein_coding MGP_AJ_T0092847.1 MGP_AJ_G0034910.1 mouse_genomes_project 9 60927956 61110123 - MGP_AJ_P0092847 Iqch protein_coding protein_coding MGP_AJ_T0092848.1 MGP_AJ_G0034910.1 mouse_genomes_project 9 60928129 61110057 - MGP_AJ_P0092848 Iqch protein_coding protein_coding MGP_AJ_T0092849.1 MGP_AJ_G0034910.1 mouse_genomes_project 9 61091286 61110125 - Iqch protein_coding retained_intron MGP_AJ_T0091878.1 MGP_AJ_G0034562.1 mouse_genomes_project 9 35198015 35199066 + MGP_AJ_P0091878 Olfr888 protein_coding protein_coding MGP_AJ_T0094585.1 MGP_AJ_G0035266.1 mouse_genomes_project 9 106001501 106096816 - MGP_AJ_P0094585 Bsn protein_coding protein_coding MGP_AJ_T0094586.1 MGP_AJ_G0035266.1 mouse_genomes_project 9 106001502 106015903 - MGP_AJ_P0094586 Bsn protein_coding protein_coding MGP_AJ_T0093692.1 MGP_AJ_G0035105.1 mouse_genomes_project 9 89167287 89183392 + MGP_AJ_P0093692 Zic4 protein_coding protein_coding MGP_AJ_T0093693.1 MGP_AJ_G0035105.1 mouse_genomes_project 9 89172907 89173673 + Zic4 protein_coding processed_transcript MGP_AJ_T0093694.1 MGP_AJ_G0035105.1 mouse_genomes_project 9 89173351 89183734 + MGP_AJ_P0093694 Zic4 protein_coding protein_coding MGP_AJ_T0093695.1 MGP_AJ_G0035105.1 mouse_genomes_project 9 89173433 89185459 + Zic4 protein_coding retained_intron MGP_AJ_T0093696.1 MGP_AJ_G0035105.1 mouse_genomes_project 9 89173509 89192287 + MGP_AJ_P0093696 Zic4 protein_coding protein_coding MGP_AJ_T0093697.1 MGP_AJ_G0035105.1 mouse_genomes_project 9 89174035 89184017 + Zic4 protein_coding retained_intron MGP_AJ_T0093698.1 MGP_AJ_G0035105.1 mouse_genomes_project 9 89175541 89183666 + MGP_AJ_P0093698 Zic4 protein_coding protein_coding MGP_AJ_T0093699.1 MGP_AJ_G0035105.1 mouse_genomes_project 9 89175750 89191452 + MGP_AJ_P0093699 Zic4 protein_coding protein_coding MGP_AJ_T0093700.1 MGP_AJ_G0035105.1 mouse_genomes_project 9 89175887 89178460 + Zic4 protein_coding retained_intron MGP_AJ_T0093701.1 MGP_AJ_G0035105.1 mouse_genomes_project 9 89182673 89188870 + Zic4 protein_coding retained_intron MGP_AJ_T0093702.1 MGP_AJ_G0035105.1 mouse_genomes_project 9 89183118 89193834 + MGP_AJ_P0093702 Zic4 protein_coding protein_coding MGP_AJ_T0093703.1 MGP_AJ_G0035105.1 mouse_genomes_project 9 89186881 89192538 + Zic4 protein_coding processed_transcript MGP_AJ_T0095324.1 MGP_AJ_G0035419.1 mouse_genomes_project 9 118796646 118797373 + MGP_AJ_P0095324 5830454E08Rik protein_coding protein_coding MGP_AJ_T0092193.1 MGP_AJ_G0034714.1 mouse_genomes_project 9 42498272 42529833 - MGP_AJ_P0092193 Tmprss4 protein_coding protein_coding MGP_AJ_T0092194.1 MGP_AJ_G0034714.1 mouse_genomes_project 9 42498273 42529831 - MGP_AJ_P0092194 Tmprss4 protein_coding nonsense_mediated_decay MGP_AJ_T0092195.1 MGP_AJ_G0034714.1 mouse_genomes_project 9 42498851 42529801 - Tmprss4 protein_coding processed_transcript MGP_AJ_T0092196.1 MGP_AJ_G0034714.1 mouse_genomes_project 9 42498851 42529717 - MGP_AJ_P0092196 Tmprss4 protein_coding nonsense_mediated_decay MGP_AJ_T0092197.1 MGP_AJ_G0034714.1 mouse_genomes_project 9 42500343 42506302 - Tmprss4 protein_coding retained_intron MGP_AJ_T0091955.1 MGP_AJ_G0034627.1 mouse_genomes_project 9 36985123 36986150 - MGP_AJ_P0091955 Olfr968 protein_coding protein_coding MGP_AJ_T0094711.1 MGP_AJ_G0035285.1 mouse_genomes_project 9 106486118 106489007 + MGP_AJ_P0094711 Dalrd3 protein_coding protein_coding MGP_AJ_T0094712.1 MGP_AJ_G0035285.1 mouse_genomes_project 9 106486142 106487752 + MGP_AJ_P0094712 Dalrd3 protein_coding nonsense_mediated_decay MGP_AJ_T0094713.1 MGP_AJ_G0035285.1 mouse_genomes_project 9 106486146 106486919 + Dalrd3 protein_coding retained_intron MGP_AJ_T0094714.1 MGP_AJ_G0035285.1 mouse_genomes_project 9 106486928 106488214 + Dalrd3 protein_coding retained_intron MGP_AJ_T0094715.1 MGP_AJ_G0035285.1 mouse_genomes_project 9 106487239 106488073 + Dalrd3 protein_coding retained_intron MGP_AJ_T0094716.1 MGP_AJ_G0035285.1 mouse_genomes_project 9 106487469 106489006 + Dalrd3 protein_coding retained_intron MGP_AJ_T0094717.1 MGP_AJ_G0035285.1 mouse_genomes_project 9 106487750 106488764 + MGP_AJ_P0094717 Dalrd3 protein_coding protein_coding MGP_AJ_T0094718.1 MGP_AJ_G0035285.1 mouse_genomes_project 9 106488499 106489004 + Dalrd3 protein_coding retained_intron MGP_AJ_T0094720.1 MGP_AJ_G0035285.1 mouse_genomes_project 9 106488624 106488888 + MGP_AJ_P0094720 Dalrd3 protein_coding protein_coding MGP_AJ_T0091915.1 MGP_AJ_G0034593.1 mouse_genomes_project 9 35962972 35964104 + MGP_AJ_P0091915 Olfr922 protein_coding protein_coding MGP_AJ_T0011067.1 MGP_AJ_G0009189.1 mouse_genomes_project 9 55631329 55631434 + Mir6385 miRNA miRNA MGP_AJ_T0092828.1 MGP_AJ_G0034903.1 mouse_genomes_project 9 60293158 60314238 - MGP_AJ_P0092828 Fem1b protein_coding protein_coding MGP_AJ_T0094247.1 MGP_AJ_G0035215.1 mouse_genomes_project 9 104387882 104390164 + MGP_AJ_P0094247 Iqcf1 protein_coding protein_coding MGP_AJ_T0094248.1 MGP_AJ_G0035215.1 mouse_genomes_project 9 104387907 104390169 + MGP_AJ_P0094248 Iqcf1 protein_coding protein_coding MGP_AJ_T0005421.1 MGP_AJ_G0004591.1 mouse_genomes_project 9 21268222 21347757 + Gm10701 antisense antisense MGP_AJ_T0092884.1 MGP_AJ_G0034919.1 mouse_genomes_project 9 61754155 61755317 + MGP_AJ_P0092884 Uchl4 protein_coding protein_coding MGP_AJ_T0093601.1 MGP_AJ_G0035084.1 mouse_genomes_project 9 84916457 84954856 + MGP_AJ_P0093601 Mrap2 protein_coding protein_coding MGP_AJ_T0093602.1 MGP_AJ_G0035084.1 mouse_genomes_project 9 84916457 84954856 + MGP_AJ_P0093602 Mrap2 protein_coding protein_coding MGP_AJ_T0093603.1 MGP_AJ_G0035084.1 mouse_genomes_project 9 84916494 84954856 + MGP_AJ_P0093603 Mrap2 protein_coding protein_coding MGP_AJ_T0092809.1 MGP_AJ_G0034900.1 mouse_genomes_project 9 59844757 59880796 + Anp32a protein_coding processed_transcript MGP_AJ_T0092810.1 MGP_AJ_G0034900.1 mouse_genomes_project 9 59844793 59881908 + MGP_AJ_P0092810 Anp32a protein_coding protein_coding MGP_AJ_T0092811.1 MGP_AJ_G0034900.1 mouse_genomes_project 9 59845365 59877829 + MGP_AJ_P0092811 Anp32a protein_coding protein_coding MGP_AJ_T0092812.1 MGP_AJ_G0034900.1 mouse_genomes_project 9 59845538 59880767 + MGP_AJ_P0092812 Anp32a protein_coding protein_coding MGP_AJ_T0092813.1 MGP_AJ_G0034900.1 mouse_genomes_project 9 59845927 59876695 + MGP_AJ_P0092813 Anp32a protein_coding protein_coding MGP_AJ_T0092814.1 MGP_AJ_G0034900.1 mouse_genomes_project 9 59847526 59876708 + Anp32a protein_coding processed_transcript MGP_AJ_T0092815.1 MGP_AJ_G0034900.1 mouse_genomes_project 9 59848257 59877826 + Anp32a protein_coding processed_transcript MGP_AJ_T0092816.1 MGP_AJ_G0034900.1 mouse_genomes_project 9 59870094 59876788 + Anp32a protein_coding processed_transcript MGP_AJ_T0092817.1 MGP_AJ_G0034900.1 mouse_genomes_project 9 59870100 59880402 + Anp32a protein_coding processed_transcript MGP_AJ_T0092818.1 MGP_AJ_G0034900.1 mouse_genomes_project 9 59876550 59880876 + Anp32a protein_coding retained_intron MGP_AJ_T0018533.1 MGP_AJ_G0015717.1 mouse_genomes_project 9 60905866 61000001 + Gm16759 processed_transcript lincRNA MGP_AJ_T0018534.1 MGP_AJ_G0015717.1 mouse_genomes_project 9 60906639 61074660 + Gm16759 processed_transcript lincRNA MGP_AJ_T0018535.1 MGP_AJ_G0015717.1 mouse_genomes_project 9 60906646 60931979 + Gm16759 processed_transcript lincRNA MGP_AJ_T0018536.1 MGP_AJ_G0015717.1 mouse_genomes_project 9 61037633 61072990 + Gm16759 processed_transcript processed_transcript MGP_AJ_T0005516.1 MGP_AJ_G0004656.1 mouse_genomes_project 9 103077848 103081068 + Gm20643 antisense antisense MGP_AJ_T0018555.1 MGP_AJ_G0015727.1 mouse_genomes_project 9 83593186 83616748 - 9330154J02Rik processed_transcript processed_transcript MGP_AJ_T0018556.1 MGP_AJ_G0015727.1 mouse_genomes_project 9 83593186 83617591 - 9330154J02Rik processed_transcript antisense MGP_AJ_T0018557.1 MGP_AJ_G0015727.1 mouse_genomes_project 9 83593247 83617783 - 9330154J02Rik processed_transcript antisense MGP_AJ_T0018558.1 MGP_AJ_G0015727.1 mouse_genomes_project 9 83594457 83616747 - 9330154J02Rik processed_transcript retained_intron MGP_AJ_T0101603.1 MGP_AJ_G0039569.1 mouse_genomes_project 9 118347787 118347936 + Snora62 snoRNA snoRNA MGP_AJ_T0005546.1 MGP_AJ_G0004679.1 mouse_genomes_project 9 108041481 108044349 - Gm43732 antisense antisense MGP_AJ_T0092231.1 MGP_AJ_G0034724.1 mouse_genomes_project 9 43251617 43274539 + MGP_AJ_P0092231 Pcsk7 protein_coding protein_coding MGP_AJ_T0095223.1 MGP_AJ_G0035385.1 mouse_genomes_project 9 116682119 116689276 + MGP_AJ_P0095223 Eomes protein_coding protein_coding MGP_AJ_T0095224.1 MGP_AJ_G0035385.1 mouse_genomes_project 9 116682251 116690043 + MGP_AJ_P0095224 Eomes protein_coding protein_coding MGP_AJ_T0095225.1 MGP_AJ_G0035385.1 mouse_genomes_project 9 116682760 116686668 + MGP_AJ_P0095225 Eomes protein_coding protein_coding MGP_AJ_T0009218.1 MGP_AJ_G0007405.1 mouse_genomes_project 9 18974896 18990599 + Gm16845 lincRNA lincRNA MGP_AJ_T0092913.1 MGP_AJ_G0034925.1 mouse_genomes_project 9 62449471 62478225 - MGP_AJ_P0092913 Slc24a1 protein_coding protein_coding MGP_AJ_T0016072.1 MGP_AJ_G0014167.1 mouse_genomes_project 9 56932396 56932871 - processed_pseudogene processed_pseudogene MGP_AJ_T0093814.1 MGP_AJ_G0035129.1 mouse_genomes_project 9 94613527 94680357 - MGP_AJ_P0093814 Pxylp1 protein_coding protein_coding MGP_AJ_T0093815.1 MGP_AJ_G0035129.1 mouse_genomes_project 9 94613535 94680373 - MGP_AJ_P0093815 Pxylp1 protein_coding protein_coding MGP_AJ_T0093816.1 MGP_AJ_G0035129.1 mouse_genomes_project 9 94613535 94680418 - MGP_AJ_P0093816 Pxylp1 protein_coding protein_coding MGP_AJ_T0093817.1 MGP_AJ_G0035129.1 mouse_genomes_project 9 94613777 94680377 - MGP_AJ_P0093817 Pxylp1 protein_coding protein_coding MGP_AJ_T0093818.1 MGP_AJ_G0035129.1 mouse_genomes_project 9 94615607 94680372 - MGP_AJ_P0093818 Pxylp1 protein_coding protein_coding MGP_AJ_T0093819.1 MGP_AJ_G0035129.1 mouse_genomes_project 9 94615778 94653946 - MGP_AJ_P0093819 Pxylp1 protein_coding protein_coding MGP_AJ_T0093820.1 MGP_AJ_G0035129.1 mouse_genomes_project 9 94629499 94645977 - Pxylp1 protein_coding processed_transcript MGP_AJ_T0093821.1 MGP_AJ_G0035129.1 mouse_genomes_project 9 94629609 94683613 - MGP_AJ_P0093821 Pxylp1 protein_coding protein_coding MGP_AJ_T0093822.1 MGP_AJ_G0035129.1 mouse_genomes_project 9 94630298 94680364 - Pxylp1 protein_coding retained_intron MGP_AJ_T0093823.1 MGP_AJ_G0035129.1 mouse_genomes_project 9 94630415 94654023 - MGP_AJ_P0093823 Pxylp1 protein_coding protein_coding MGP_AJ_T0093824.1 MGP_AJ_G0035129.1 mouse_genomes_project 9 94647522 94654025 - Pxylp1 protein_coding processed_transcript MGP_AJ_T0093825.1 MGP_AJ_G0035129.1 mouse_genomes_project 9 94651845 94683034 - Pxylp1 protein_coding processed_transcript MGP_AJ_T0093826.1 MGP_AJ_G0035129.1 mouse_genomes_project 9 94678574 94680377 - Pxylp1 protein_coding retained_intron MGP_AJ_T0095452.1 MGP_AJ_G0035458.1 mouse_genomes_project 9 121686103 121728944 + MGP_AJ_P0095452 Limd1 protein_coding protein_coding MGP_AJ_T0016157.1 MGP_AJ_G0014252.1 mouse_genomes_project 9 98467767 98468759 - processed_pseudogene processed_pseudogene MGP_AJ_T0093586.1 MGP_AJ_G0035081.1 mouse_genomes_project 9 84555866 84669816 - MGP_AJ_P0093586 Snap91 protein_coding protein_coding MGP_AJ_T0093587.1 MGP_AJ_G0035081.1 mouse_genomes_project 9 84555876 84598618 - Snap91 protein_coding retained_intron MGP_AJ_T0093588.1 MGP_AJ_G0035081.1 mouse_genomes_project 9 84555879 84669826 - MGP_AJ_P0093588 Snap91 protein_coding protein_coding MGP_AJ_T0093589.1 MGP_AJ_G0035081.1 mouse_genomes_project 9 84555879 84669826 - MGP_AJ_P0093589 Snap91 protein_coding protein_coding MGP_AJ_T0093590.1 MGP_AJ_G0035081.1 mouse_genomes_project 9 84556621 84669791 - MGP_AJ_P0093590 Snap91 protein_coding protein_coding MGP_AJ_T0093591.1 MGP_AJ_G0035081.1 mouse_genomes_project 9 84565238 84588561 - Snap91 protein_coding retained_intron MGP_AJ_T0093592.1 MGP_AJ_G0035081.1 mouse_genomes_project 9 84582459 84588735 - Snap91 protein_coding retained_intron MGP_AJ_T0093593.1 MGP_AJ_G0035081.1 mouse_genomes_project 9 84596341 84619126 - Snap91 protein_coding processed_transcript MGP_AJ_T0093594.1 MGP_AJ_G0035081.1 mouse_genomes_project 9 84612697 84670031 - Snap91 protein_coding retained_intron MGP_AJ_T0093595.1 MGP_AJ_G0035081.1 mouse_genomes_project 9 84624482 84669774 - MGP_AJ_P0093595 Snap91 protein_coding protein_coding MGP_AJ_T0093209.1 MGP_AJ_G0034995.1 mouse_genomes_project 9 70072214 70082912 + MGP_AJ_P0093209 Mns1 protein_coding protein_coding MGP_AJ_T0093210.1 MGP_AJ_G0034995.1 mouse_genomes_project 9 70072725 70086852 + MGP_AJ_P0093210 Mns1 protein_coding protein_coding MGP_AJ_T0093211.1 MGP_AJ_G0034995.1 mouse_genomes_project 9 70072734 70096117 + MGP_AJ_P0093211 Mns1 protein_coding protein_coding MGP_AJ_T0095104.1 MGP_AJ_G0035353.1 mouse_genomes_project 9 109347905 109355062 + MGP_AJ_P0095104 Epm2aip1 protein_coding protein_coding MGP_AJ_T0095105.1 MGP_AJ_G0035353.1 mouse_genomes_project 9 109347921 109355066 + MGP_AJ_P0095105 Epm2aip1 protein_coding protein_coding MGP_AJ_T0095106.1 MGP_AJ_G0035353.1 mouse_genomes_project 9 109350078 109353516 + Epm2aip1 protein_coding processed_transcript MGP_AJ_T0100302.1 MGP_AJ_G0038268.1 mouse_genomes_project 9 93719783 93719961 + Gm24004 snRNA snRNA MGP_AJ_T0091359.1 MGP_AJ_G0034361.1 mouse_genomes_project 9 15783018 15783966 + MGP_AJ_P0091359 Olfr830 protein_coding protein_coding MGP_AJ_T0011107.1 MGP_AJ_G0009229.1 mouse_genomes_project 9 119179654 119179716 + Mir7090 miRNA miRNA MGP_AJ_T0095419.1 MGP_AJ_G0035445.1 mouse_genomes_project 9 121039945 121050551 - MGP_AJ_P0095419 Zfp445 protein_coding protein_coding MGP_AJ_T0091894.1 MGP_AJ_G0034578.1 mouse_genomes_project 9 35580046 35581778 + MGP_AJ_P0091894 Olfr905 protein_coding protein_coding MGP_AJ_T0005423.1 MGP_AJ_G0004593.1 mouse_genomes_project 9 29483608 29492002 + Gm27201 antisense antisense MGP_AJ_T0093270.1 MGP_AJ_G0035006.1 mouse_genomes_project 9 70689902 70743479 + MGP_AJ_P0093270 Rab27a protein_coding protein_coding MGP_AJ_T0093271.1 MGP_AJ_G0035006.1 mouse_genomes_project 9 70689905 70743443 + MGP_AJ_P0093271 Rab27a protein_coding protein_coding MGP_AJ_T0093272.1 MGP_AJ_G0035006.1 mouse_genomes_project 9 70689945 70741308 + MGP_AJ_P0093272 Rab27a protein_coding unknown_likely_coding MGP_AJ_T0093273.1 MGP_AJ_G0035006.1 mouse_genomes_project 9 70690032 70731035 + Rab27a protein_coding retained_intron MGP_AJ_T0093274.1 MGP_AJ_G0035006.1 mouse_genomes_project 9 70740684 70742265 + Rab27a protein_coding retained_intron MGP_AJ_T0091276.1 MGP_AJ_G0034330.1 mouse_genomes_project 9 11595896 11604603 - MGP_AJ_P0091276 Piwil4 protein_coding protein_coding MGP_AJ_T0091277.1 MGP_AJ_G0034330.1 mouse_genomes_project 9 11601310 11640242 - MGP_AJ_P0091277 Piwil4 protein_coding protein_coding MGP_AJ_T0091278.1 MGP_AJ_G0034330.1 mouse_genomes_project 9 11601311 11618006 - MGP_AJ_P0091278 Piwil4 protein_coding protein_coding MGP_AJ_T0091279.1 MGP_AJ_G0034330.1 mouse_genomes_project 9 11601890 11640254 - MGP_AJ_P0091279 Piwil4 protein_coding protein_coding MGP_AJ_T0091750.1 MGP_AJ_G0034512.1 mouse_genomes_project 9 32215942 32224000 + MGP_AJ_P0091750 Rpusd4 protein_coding protein_coding MGP_AJ_T0091751.1 MGP_AJ_G0034512.1 mouse_genomes_project 9 32220374 32223245 + Rpusd4 protein_coding retained_intron MGP_AJ_T0091752.1 MGP_AJ_G0034512.1 mouse_genomes_project 9 32220730 32221845 + Rpusd4 protein_coding retained_intron MGP_AJ_T0091753.1 MGP_AJ_G0034512.1 mouse_genomes_project 9 32223231 32225743 + MGP_AJ_P0091753 Rpusd4 protein_coding nonsense_mediated_decay MGP_AJ_T0005458.1 MGP_AJ_G0004616.1 mouse_genomes_project 9 55524319 55525494 + Gm16131 antisense antisense MGP_AJ_T0093307.1 MGP_AJ_G0035015.1 mouse_genomes_project 9 72718085 72767261 + Myo5a protein_coding retained_intron MGP_AJ_T0093308.1 MGP_AJ_G0035015.1 mouse_genomes_project 9 72718264 72874774 + MGP_AJ_P0093308 Myo5a protein_coding protein_coding MGP_AJ_T0093309.1 MGP_AJ_G0035015.1 mouse_genomes_project 9 72718282 72781233 + Myo5a protein_coding retained_intron MGP_AJ_T0093310.1 MGP_AJ_G0035015.1 mouse_genomes_project 9 72718462 72869628 + MGP_AJ_P0093310 Myo5a protein_coding protein_coding MGP_AJ_T0093311.1 MGP_AJ_G0035015.1 mouse_genomes_project 9 72718641 72827033 + MGP_AJ_P0093311 Myo5a protein_coding nonsense_mediated_decay MGP_AJ_T0093312.1 MGP_AJ_G0035015.1 mouse_genomes_project 9 72718676 72870031 + MGP_AJ_P0093312 Myo5a protein_coding protein_coding MGP_AJ_T0093313.1 MGP_AJ_G0035015.1 mouse_genomes_project 9 72790914 72797537 + Myo5a protein_coding retained_intron MGP_AJ_T0093314.1 MGP_AJ_G0035015.1 mouse_genomes_project 9 72834660 72869562 + Myo5a protein_coding processed_transcript MGP_AJ_T0093315.1 MGP_AJ_G0035015.1 mouse_genomes_project 9 72834723 72845188 + Myo5a protein_coding retained_intron MGP_AJ_T0093316.1 MGP_AJ_G0035015.1 mouse_genomes_project 9 72836372 72847288 + MGP_AJ_P0093316 Myo5a protein_coding protein_coding MGP_AJ_T0093317.1 MGP_AJ_G0035015.1 mouse_genomes_project 9 72836471 72869071 + MGP_AJ_P0093317 Myo5a protein_coding protein_coding MGP_AJ_T0093318.1 MGP_AJ_G0035015.1 mouse_genomes_project 9 72836473 72852407 + MGP_AJ_P0093318 Myo5a protein_coding protein_coding MGP_AJ_T0093319.1 MGP_AJ_G0035015.1 mouse_genomes_project 9 72841028 72844082 + Myo5a protein_coding retained_intron MGP_AJ_T0093320.1 MGP_AJ_G0035015.1 mouse_genomes_project 9 72844860 72854840 + Myo5a protein_coding retained_intron MGP_AJ_T0101535.1 MGP_AJ_G0039501.1 mouse_genomes_project 9 12231009 12231142 + Gm22620 snoRNA snoRNA MGP_AJ_T0101589.1 MGP_AJ_G0039555.1 mouse_genomes_project 9 99229655 99229787 - Gm24638 snoRNA snoRNA MGP_AJ_T0093860.1 MGP_AJ_G0035139.1 mouse_genomes_project 9 96388512 96402663 - MGP_AJ_P0093860 Mrps22 protein_coding protein_coding MGP_AJ_T0093861.1 MGP_AJ_G0035139.1 mouse_genomes_project 9 96394949 96402648 - Mrps22 protein_coding retained_intron MGP_AJ_T0092912.1 MGP_AJ_G0034924.1 mouse_genomes_project 9 62336273 62445198 + MGP_AJ_P0092912 Dennd4a protein_coding protein_coding MGP_AJ_T0091371.1 MGP_AJ_G0034373.1 mouse_genomes_project 9 16378499 16379447 - MGP_AJ_P0091371 Olfr850 protein_coding protein_coding MGP_AJ_T0093511.1 MGP_AJ_G0035067.1 mouse_genomes_project 9 81140281 81177542 - MGP_AJ_P0093511 Lca5 protein_coding nonsense_mediated_decay MGP_AJ_T0093512.1 MGP_AJ_G0035067.1 mouse_genomes_project 9 81141366 81191664 - MGP_AJ_P0093512 Lca5 protein_coding protein_coding MGP_AJ_T0093513.1 MGP_AJ_G0035067.1 mouse_genomes_project 9 81143421 81191564 - MGP_AJ_P0093513 Lca5 protein_coding protein_coding MGP_AJ_T0093514.1 MGP_AJ_G0035067.1 mouse_genomes_project 9 81150779 81152014 - Lca5 protein_coding retained_intron MGP_AJ_T0093515.1 MGP_AJ_G0035067.1 mouse_genomes_project 9 81172827 81191630 - Lca5 protein_coding retained_intron MGP_AJ_T0093516.1 MGP_AJ_G0035067.1 mouse_genomes_project 9 81173803 81185293 - MGP_AJ_P0093516 Lca5 protein_coding protein_coding MGP_AJ_T0093517.1 MGP_AJ_G0035067.1 mouse_genomes_project 9 81174008 81177550 - Lca5 protein_coding retained_intron MGP_AJ_T0093518.1 MGP_AJ_G0035067.1 mouse_genomes_project 9 81177329 81191653 - MGP_AJ_P0093518 Lca5 protein_coding protein_coding MGP_AJ_T0093519.1 MGP_AJ_G0035067.1 mouse_genomes_project 9 81177420 81191599 - Lca5 protein_coding processed_transcript MGP_AJ_T0091667.1 MGP_AJ_G0034493.1 mouse_genomes_project 9 27992840 28032763 + MGP_AJ_P0091667 Zbtb44 protein_coding protein_coding MGP_AJ_T0091668.1 MGP_AJ_G0034493.1 mouse_genomes_project 9 28015865 28032491 + MGP_AJ_P0091668 Zbtb44 protein_coding protein_coding MGP_AJ_T0091389.1 MGP_AJ_G0034391.1 mouse_genomes_project 9 17113914 17142810 + MGP_AJ_P0091389 Olfr872 protein_coding protein_coding MGP_AJ_T0091372.1 MGP_AJ_G0034374.1 mouse_genomes_project 9 16396597 16397536 + MGP_AJ_P0091372 Olfr851 protein_coding protein_coding MGP_AJ_T0009238.1 MGP_AJ_G0007423.1 mouse_genomes_project 9 41401097 41409951 + Gm26737 lincRNA lincRNA MGP_AJ_T0092188.1 MGP_AJ_G0034710.1 mouse_genomes_project 9 42404129 42434020 + MGP_AJ_P0092188 Amica1 protein_coding protein_coding MGP_AJ_T0092114.1 MGP_AJ_G0034688.1 mouse_genomes_project 9 41692421 41696207 - MGP_AJ_P0092114 Trappc4 protein_coding protein_coding MGP_AJ_T0009278.1 MGP_AJ_G0007455.1 mouse_genomes_project 9 73078742 73087164 + 4933433G15Rik lincRNA lincRNA MGP_AJ_T0009279.1 MGP_AJ_G0007455.1 mouse_genomes_project 9 73078742 73084987 + 4933433G15Rik lincRNA lincRNA MGP_AJ_T0009326.1 MGP_AJ_G0007493.1 mouse_genomes_project 9 100529243 100530194 + 4930533D04Rik lincRNA lincRNA MGP_AJ_T0095480.1 MGP_AJ_G0035466.1 mouse_genomes_project 9 122059450 122069533 - MGP_AJ_P0095480 Xcr1 protein_coding protein_coding MGP_AJ_T0095426.1 MGP_AJ_G0035450.1 mouse_genomes_project 9 121214697 121216793 + MGP_AJ_P0095426 Tmem42 protein_coding protein_coding MGP_AJ_T0094089.1 MGP_AJ_G0035189.1 mouse_genomes_project 9 102404022 102742822 + MGP_AJ_P0094089 Cpne4 protein_coding protein_coding MGP_AJ_T0094090.1 MGP_AJ_G0035189.1 mouse_genomes_project 9 102423295 102742574 + MGP_AJ_P0094090 Cpne4 protein_coding protein_coding MGP_AJ_T0094091.1 MGP_AJ_G0035189.1 mouse_genomes_project 9 102426120 102911417 + MGP_AJ_P0094091 Cpne4 protein_coding protein_coding MGP_AJ_T0094092.1 MGP_AJ_G0035189.1 mouse_genomes_project 9 102426424 102911417 + MGP_AJ_P0094092 Cpne4 protein_coding protein_coding MGP_AJ_T0092954.1 MGP_AJ_G0034945.1 mouse_genomes_project 9 63216875 63237419 + protein_coding processed_transcript MGP_AJ_T0092955.1 MGP_AJ_G0034945.1 mouse_genomes_project 9 63218576 63236362 + protein_coding processed_transcript MGP_AJ_T0092956.1 MGP_AJ_G0034945.1 mouse_genomes_project 9 63225371 63239077 + MGP_AJ_P0092956 protein_coding protein_coding MGP_AJ_T0092957.1 MGP_AJ_G0034945.1 mouse_genomes_project 9 63225402 63237084 + protein_coding retained_intron MGP_AJ_T0092958.1 MGP_AJ_G0034945.1 mouse_genomes_project 9 63225409 63239043 + MGP_AJ_P0092958 protein_coding protein_coding MGP_AJ_T0092959.1 MGP_AJ_G0034945.1 mouse_genomes_project 9 63225414 63237075 + MGP_AJ_P0092959 protein_coding protein_coding MGP_AJ_T0091780.1 MGP_AJ_G0034527.1 mouse_genomes_project 9 33451356 33454410 + MGP_AJ_P0091780 Gm7257 protein_coding protein_coding MGP_AJ_T0093655.1 MGP_AJ_G0035100.1 mouse_genomes_project 9 87844161 87856148 + MGP_AJ_P0093655 Ctsh protein_coding protein_coding MGP_AJ_T0093656.1 MGP_AJ_G0035100.1 mouse_genomes_project 9 87844276 87866766 + MGP_AJ_P0093656 Ctsh protein_coding protein_coding MGP_AJ_T0093657.1 MGP_AJ_G0035100.1 mouse_genomes_project 9 87844515 87866764 + Ctsh protein_coding retained_intron MGP_AJ_T0093658.1 MGP_AJ_G0035100.1 mouse_genomes_project 9 87844530 87845356 + Ctsh protein_coding retained_intron MGP_AJ_T0093659.1 MGP_AJ_G0035100.1 mouse_genomes_project 9 87844546 87854965 + MGP_AJ_P0093659 Ctsh protein_coding protein_coding MGP_AJ_T0093660.1 MGP_AJ_G0035100.1 mouse_genomes_project 9 87844547 87866764 + MGP_AJ_P0093660 Ctsh protein_coding nonsense_mediated_decay MGP_AJ_T0093661.1 MGP_AJ_G0035100.1 mouse_genomes_project 9 87844563 87858068 + Ctsh protein_coding retained_intron MGP_AJ_T0093662.1 MGP_AJ_G0035100.1 mouse_genomes_project 9 87844568 87866418 + MGP_AJ_P0093662 Ctsh protein_coding protein_coding MGP_AJ_T0093663.1 MGP_AJ_G0035100.1 mouse_genomes_project 9 87850854 87852324 + Ctsh protein_coding retained_intron MGP_AJ_T0093664.1 MGP_AJ_G0035100.1 mouse_genomes_project 9 87853250 87862609 + Ctsh protein_coding retained_intron MGP_AJ_T0093665.1 MGP_AJ_G0035100.1 mouse_genomes_project 9 87862419 87866426 + Ctsh protein_coding retained_intron MGP_AJ_T0016175.1 MGP_AJ_G0014270.1 mouse_genomes_project 9 106476593 106481752 + processed_pseudogene processed_pseudogene MGP_AJ_T0098747.1 MGP_AJ_G0036731.1 mouse_genomes_project 9 9744270 9744391 + Gm25365 rRNA rRNA MGP_AJ_T0091565.1 MGP_AJ_G0034455.1 mouse_genomes_project 9 19005069 19016622 + MGP_AJ_P0091565 Cnn1 protein_coding protein_coding MGP_AJ_T0091921.1 MGP_AJ_G0034599.1 mouse_genomes_project 9 36127474 36128256 + MGP_AJ_P0091921 Olfr933 protein_coding protein_coding MGP_AJ_T0092170.1 MGP_AJ_G0034704.1 mouse_genomes_project 9 42234836 42277975 - MGP_AJ_P0092170 Ube4a protein_coding protein_coding MGP_AJ_T0092171.1 MGP_AJ_G0034704.1 mouse_genomes_project 9 42237553 42278015 - MGP_AJ_P0092171 Ube4a protein_coding protein_coding MGP_AJ_T0092172.1 MGP_AJ_G0034704.1 mouse_genomes_project 9 42244821 42277934 - MGP_AJ_P0092172 Ube4a protein_coding nonsense_mediated_decay MGP_AJ_T0092173.1 MGP_AJ_G0034704.1 mouse_genomes_project 9 42244921 42277940 - MGP_AJ_P0092173 Ube4a protein_coding nonsense_mediated_decay MGP_AJ_T0092174.1 MGP_AJ_G0034704.1 mouse_genomes_project 9 42258125 42277972 - Ube4a protein_coding retained_intron MGP_AJ_T0092175.1 MGP_AJ_G0034704.1 mouse_genomes_project 9 42265162 42277969 - MGP_AJ_P0092175 Ube4a protein_coding protein_coding MGP_AJ_T0092176.1 MGP_AJ_G0034704.1 mouse_genomes_project 9 42268495 42277951 - Ube4a protein_coding retained_intron MGP_AJ_T0002401.1 MGP_AJ_G0002310.1 mouse_genomes_project 9 84574406 84576718 - TEC TEC MGP_AJ_T0095046.1 MGP_AJ_G0035343.1 mouse_genomes_project 9 108929952 108944076 - MGP_AJ_P0095046 Tmie protein_coding unknown_likely_coding MGP_AJ_T0095047.1 MGP_AJ_G0035343.1 mouse_genomes_project 9 108939478 108943357 - Tmie protein_coding processed_transcript MGP_AJ_T0095048.1 MGP_AJ_G0035343.1 mouse_genomes_project 9 108939526 108940072 - Tmie protein_coding retained_intron MGP_AJ_T0095291.1 MGP_AJ_G0035403.1 mouse_genomes_project 9 117833077 117942740 - MGP_AJ_P0095291 Scn10a protein_coding protein_coding MGP_AJ_T0091442.1 MGP_AJ_G0034405.1 mouse_genomes_project 9 17687707 17695473 + MGP_AJ_P0091442 Rdh8 protein_coding protein_coding MGP_AJ_T0091837.1 MGP_AJ_G0034540.1 mouse_genomes_project 9 34316752 34387074 - MGP_AJ_P0091837 Ccdc15 protein_coding protein_coding MGP_AJ_T0091838.1 MGP_AJ_G0034540.1 mouse_genomes_project 9 34317479 34386971 - MGP_AJ_P0091838 Ccdc15 protein_coding unknown_likely_coding MGP_AJ_T0091201.1 MGP_AJ_G0034308.1 mouse_genomes_project 9 4828666 4846342 - MGP_AJ_P0091201 Birc3 protein_coding unknown_likely_coding MGP_AJ_T0091202.1 MGP_AJ_G0034308.1 mouse_genomes_project 9 4829097 4840620 - MGP_AJ_P0091202 Birc3 protein_coding nonsense_mediated_decay MGP_AJ_T0091203.1 MGP_AJ_G0034308.1 mouse_genomes_project 9 4835513 4854501 - MGP_AJ_P0091203 Birc3 protein_coding protein_coding MGP_AJ_T0091204.1 MGP_AJ_G0034308.1 mouse_genomes_project 9 4841084 4854688 - MGP_AJ_P0091204 Birc3 protein_coding protein_coding MGP_AJ_T0091205.1 MGP_AJ_G0034308.1 mouse_genomes_project 9 4841103 4854704 - MGP_AJ_P0091205 Birc3 protein_coding protein_coding MGP_AJ_T0091206.1 MGP_AJ_G0034308.1 mouse_genomes_project 9 4846547 4854375 - Birc3 protein_coding processed_transcript MGP_AJ_T0091207.1 MGP_AJ_G0034308.1 mouse_genomes_project 9 4849002 4854415 - Birc3 protein_coding processed_transcript MGP_AJ_T0009336.1 MGP_AJ_G0007501.1 mouse_genomes_project 9 105492126 105492591 + Gm38150 lincRNA lincRNA MGP_AJ_T0093064.1 MGP_AJ_G0034966.1 mouse_genomes_project 9 64787579 64973265 - MGP_AJ_P0093064 Tln2 protein_coding unknown_likely_coding MGP_AJ_T0093065.1 MGP_AJ_G0034966.1 mouse_genomes_project 9 64787587 65136073 - MGP_AJ_P0093065 Tln2 protein_coding protein_coding MGP_AJ_T0093066.1 MGP_AJ_G0034966.1 mouse_genomes_project 9 64791605 65116646 - MGP_AJ_P0093066 Tln2 protein_coding protein_coding MGP_AJ_T0093978.1 MGP_AJ_G0035168.1 mouse_genomes_project 9 100455923 100464071 + MGP_AJ_P0093978 Anapc13 protein_coding protein_coding MGP_AJ_T0093979.1 MGP_AJ_G0035168.1 mouse_genomes_project 9 100455951 100463896 + MGP_AJ_P0093979 Anapc13 protein_coding protein_coding MGP_AJ_T0093980.1 MGP_AJ_G0035168.1 mouse_genomes_project 9 100456290 100463888 + MGP_AJ_P0093980 Anapc13 protein_coding protein_coding MGP_AJ_T0093981.1 MGP_AJ_G0035168.1 mouse_genomes_project 9 100456306 100463888 + MGP_AJ_P0093981 Anapc13 protein_coding protein_coding MGP_AJ_T0093982.1 MGP_AJ_G0035168.1 mouse_genomes_project 9 100458141 100459357 + Anapc13 protein_coding retained_intron MGP_AJ_T0092198.1 MGP_AJ_G0034715.1 mouse_genomes_project 9 42507655 42518727 + BC049352 protein_coding lincRNA MGP_AJ_T0092199.1 MGP_AJ_G0034715.1 mouse_genomes_project 9 42507682 42578395 + BC049352 protein_coding lincRNA MGP_AJ_T0092200.1 MGP_AJ_G0034715.1 mouse_genomes_project 9 42521524 42578395 + BC049352 protein_coding lincRNA MGP_AJ_T0092201.1 MGP_AJ_G0034715.1 mouse_genomes_project 9 42521524 42578356 + MGP_AJ_P0092201 BC049352 protein_coding protein_coding MGP_AJ_T0002376.1 MGP_AJ_G0002286.1 mouse_genomes_project 9 70327680 70329173 + TEC TEC MGP_AJ_T0018530.1 MGP_AJ_G0015716.1 mouse_genomes_project 9 57440815 57445076 - Gm15507 processed_transcript processed_transcript MGP_AJ_T0018531.1 MGP_AJ_G0015716.1 mouse_genomes_project 9 57441017 57445076 - Gm15507 processed_transcript processed_transcript MGP_AJ_T0018532.1 MGP_AJ_G0015716.1 mouse_genomes_project 9 57443900 57445106 - Gm15507 processed_transcript processed_transcript MGP_AJ_T0100290.1 MGP_AJ_G0038256.1 mouse_genomes_project 9 72023660 72023775 + Gm24141 snRNA snRNA MGP_AJ_T0095263.1 MGP_AJ_G0035395.1 mouse_genomes_project 9 117410491 117426814 - MGP_AJ_P0095263 Slc22a13 protein_coding protein_coding MGP_AJ_T0016089.1 MGP_AJ_G0014184.1 mouse_genomes_project 9 71340935 71341095 - processed_pseudogene processed_pseudogene MGP_AJ_T0009353.1 MGP_AJ_G0007511.1 mouse_genomes_project 9 116349544 116369660 + Gm17399 lincRNA lincRNA MGP_AJ_T0091533.1 MGP_AJ_G0034438.1 mouse_genomes_project 9 18626173 18652072 + MGP_AJ_P0091533 Ldlr protein_coding protein_coding MGP_AJ_T0101598.1 MGP_AJ_G0039564.1 mouse_genomes_project 9 110580136 110580269 + Gm24957 snoRNA snoRNA MGP_AJ_T0092486.1 MGP_AJ_G0034809.1 mouse_genomes_project 9 52037011 52052900 + MGP_AJ_P0092486 Dnaja4 protein_coding protein_coding MGP_AJ_T0092487.1 MGP_AJ_G0034809.1 mouse_genomes_project 9 52037652 52047475 + MGP_AJ_P0092487 Dnaja4 protein_coding protein_coding MGP_AJ_T0092488.1 MGP_AJ_G0034809.1 mouse_genomes_project 9 52037697 52054454 + MGP_AJ_P0092488 Dnaja4 protein_coding protein_coding MGP_AJ_T0100279.1 MGP_AJ_G0038245.1 mouse_genomes_project 9 63912804 63912906 - Gm23428 snRNA snRNA MGP_AJ_T0094719.1 MGP_AJ_G0035286.1 mouse_genomes_project 9 106488543 106494967 - MGP_AJ_P0094719 Wdr6 protein_coding protein_coding MGP_AJ_T0091778.1 MGP_AJ_G0034525.1 mouse_genomes_project 9 32804798 32811787 - MGP_AJ_P0091778 9230110F15Rik protein_coding protein_coding MGP_AJ_T0011734.1 MGP_AJ_G0009856.1 mouse_genomes_project 9 18576921 18577105 + Gm27373 misc_RNA misc_RNA MGP_AJ_T0101593.1 MGP_AJ_G0039559.1 mouse_genomes_project 9 105891435 105891563 + Gm24944 snoRNA snoRNA MGP_AJ_T0093651.1 MGP_AJ_G0035099.1 mouse_genomes_project 9 87697623 87703578 + MGP_AJ_P0093651 Rasgrf1 protein_coding protein_coding MGP_AJ_T0093652.1 MGP_AJ_G0035099.1 mouse_genomes_project 9 87697624 87703565 + MGP_AJ_P0093652 Rasgrf1 protein_coding protein_coding MGP_AJ_T0093653.1 MGP_AJ_G0035099.1 mouse_genomes_project 9 87697624 87814670 + MGP_AJ_P0093653 Rasgrf1 protein_coding protein_coding MGP_AJ_T0093654.1 MGP_AJ_G0035099.1 mouse_genomes_project 9 87697627 87714439 + Rasgrf1 protein_coding retained_intron MGP_AJ_T0094521.1 MGP_AJ_G0035257.1 mouse_genomes_project 9 105888289 105889946 - MGP_AJ_P0094521 Fam212a protein_coding protein_coding MGP_AJ_T0094522.1 MGP_AJ_G0035257.1 mouse_genomes_project 9 105888699 105889699 - MGP_AJ_P0094522 Fam212a protein_coding protein_coding MGP_AJ_T0005426.1 MGP_AJ_G0004596.1 mouse_genomes_project 9 33785598 33801657 + Gm26787 antisense antisense MGP_AJ_T0092301.1 MGP_AJ_G0034745.1 mouse_genomes_project 9 46027934 46218701 - MGP_AJ_P0092301 Zbtb16 protein_coding unknown_likely_coding MGP_AJ_T0002385.1 MGP_AJ_G0002295.1 mouse_genomes_project 9 71219094 71221110 - TEC TEC MGP_AJ_T0093608.1 MGP_AJ_G0035086.1 mouse_genomes_project 9 85463924 85492370 - MGP_AJ_P0093608 Tbx18 protein_coding protein_coding MGP_AJ_T0093609.1 MGP_AJ_G0035086.1 mouse_genomes_project 9 85485497 85491611 - Tbx18 protein_coding processed_transcript MGP_AJ_T0005481.1 MGP_AJ_G0004634.1 mouse_genomes_project 9 78059236 78061363 - Gm27227 antisense antisense MGP_AJ_T0009254.1 MGP_AJ_G0007436.1 mouse_genomes_project 9 55787349 55791029 + 1700072B07Rik lincRNA lincRNA MGP_AJ_T0095296.1 MGP_AJ_G0035408.1 mouse_genomes_project 9 118150415 118180566 + MGP_AJ_P0095296 Ttc21a protein_coding protein_coding MGP_AJ_T0095297.1 MGP_AJ_G0035408.1 mouse_genomes_project 9 118150444 118179822 + Ttc21a protein_coding retained_intron MGP_AJ_T0095298.1 MGP_AJ_G0035408.1 mouse_genomes_project 9 118150445 118175441 + Ttc21a protein_coding retained_intron MGP_AJ_T0095299.1 MGP_AJ_G0035408.1 mouse_genomes_project 9 118174382 118178938 + Ttc21a protein_coding retained_intron MGP_AJ_T0005550.1 MGP_AJ_G0004683.1 mouse_genomes_project 9 112946894 112949049 + Gm9888 antisense antisense MGP_AJ_T0092551.1 MGP_AJ_G0034828.1 mouse_genomes_project 9 53433437 53473652 + MGP_AJ_P0092551 Pstpip1 protein_coding protein_coding MGP_AJ_T0092552.1 MGP_AJ_G0034828.1 mouse_genomes_project 9 53433451 53473640 + Pstpip1 protein_coding retained_intron MGP_AJ_T0092553.1 MGP_AJ_G0034828.1 mouse_genomes_project 9 53433451 53473636 + Pstpip1 protein_coding retained_intron MGP_AJ_T0092554.1 MGP_AJ_G0034828.1 mouse_genomes_project 9 53465194 53470856 + Pstpip1 protein_coding processed_transcript MGP_AJ_T0092555.1 MGP_AJ_G0034828.1 mouse_genomes_project 9 53466997 53468665 + Pstpip1 protein_coding retained_intron MGP_AJ_T0092556.1 MGP_AJ_G0034828.1 mouse_genomes_project 9 53467962 53470915 + Pstpip1 protein_coding retained_intron MGP_AJ_T0092557.1 MGP_AJ_G0034828.1 mouse_genomes_project 9 53467962 53468955 + Pstpip1 protein_coding retained_intron MGP_AJ_T0011074.1 MGP_AJ_G0009196.1 mouse_genomes_project 9 65315520 65315584 - Mir7241 miRNA miRNA MGP_AJ_T0011047.1 MGP_AJ_G0009169.1 mouse_genomes_project 9 19020935 19021005 - Mir7084 miRNA miRNA MGP_AJ_T0093071.1 MGP_AJ_G0034970.1 mouse_genomes_project 9 66249689 66261821 + Rora protein_coding processed_transcript MGP_AJ_T0093072.1 MGP_AJ_G0034970.1 mouse_genomes_project 9 66249689 66995388 + MGP_AJ_P0093072 Rora protein_coding protein_coding MGP_AJ_T0093073.1 MGP_AJ_G0034970.1 mouse_genomes_project 9 66249794 66971686 + MGP_AJ_P0093073 Rora protein_coding nonsense_mediated_decay MGP_AJ_T0093074.1 MGP_AJ_G0034970.1 mouse_genomes_project 9 66251206 66261034 + Rora protein_coding processed_transcript MGP_AJ_T0093075.1 MGP_AJ_G0034970.1 mouse_genomes_project 9 66799448 66855019 + Rora protein_coding processed_transcript MGP_AJ_T0093076.1 MGP_AJ_G0034970.1 mouse_genomes_project 9 66894725 66986944 + MGP_AJ_P0093076 Rora protein_coding protein_coding MGP_AJ_T0093794.1 MGP_AJ_G0035126.1 mouse_genomes_project 9 94255531 94264800 - MGP_AJ_P0093794 protein_coding protein_coding MGP_AJ_T0018527.1 MGP_AJ_G0015714.1 mouse_genomes_project 9 41392932 41394592 - Gm20444 processed_transcript processed_transcript MGP_AJ_T0092610.1 MGP_AJ_G0034844.1 mouse_genomes_project 9 54622547 54632913 - MGP_AJ_P0092610 1700017B05Rik protein_coding protein_coding MGP_AJ_T0005487.1 MGP_AJ_G0004636.1 mouse_genomes_project 9 79519492 79601715 - Gm26907 antisense antisense MGP_AJ_T0093128.1 MGP_AJ_G0034982.1 mouse_genomes_project 9 68174342 68224337 + MGP_AJ_P0093128 Sltm protein_coding protein_coding MGP_AJ_T0091378.1 MGP_AJ_G0034380.1 mouse_genomes_project 9 16677010 16680808 + MGP_AJ_P0091378 Olfr58 protein_coding protein_coding MGP_AJ_T0094070.1 MGP_AJ_G0035187.1 mouse_genomes_project 9 102004111 102114216 - MGP_AJ_P0094070 Dnajc13 protein_coding protein_coding MGP_AJ_T0094071.1 MGP_AJ_G0035187.1 mouse_genomes_project 9 102004881 102006326 - Dnajc13 protein_coding retained_intron MGP_AJ_T0094072.1 MGP_AJ_G0035187.1 mouse_genomes_project 9 102005002 102009681 - Dnajc13 protein_coding processed_transcript MGP_AJ_T0094073.1 MGP_AJ_G0035187.1 mouse_genomes_project 9 102005096 102009939 - Dnajc13 protein_coding retained_intron MGP_AJ_T0094074.1 MGP_AJ_G0035187.1 mouse_genomes_project 9 102005146 102098116 - MGP_AJ_P0094074 Dnajc13 protein_coding protein_coding MGP_AJ_T0094075.1 MGP_AJ_G0035187.1 mouse_genomes_project 9 102009670 102015610 - MGP_AJ_P0094075 Dnajc13 protein_coding nonsense_mediated_decay MGP_AJ_T0094076.1 MGP_AJ_G0035187.1 mouse_genomes_project 9 102014922 102017898 - MGP_AJ_P0094076 Dnajc13 protein_coding protein_coding MGP_AJ_T0094077.1 MGP_AJ_G0035187.1 mouse_genomes_project 9 102017607 102020844 - Dnajc13 protein_coding retained_intron MGP_AJ_T0094078.1 MGP_AJ_G0035187.1 mouse_genomes_project 9 102034830 102039732 - Dnajc13 protein_coding retained_intron MGP_AJ_T0094079.1 MGP_AJ_G0035187.1 mouse_genomes_project 9 102041866 102055045 - MGP_AJ_P0094079 Dnajc13 protein_coding nonsense_mediated_decay MGP_AJ_T0094080.1 MGP_AJ_G0035187.1 mouse_genomes_project 9 102045279 102053279 - Dnajc13 protein_coding retained_intron MGP_AJ_T0094081.1 MGP_AJ_G0035187.1 mouse_genomes_project 9 102048819 102056441 - Dnajc13 protein_coding retained_intron MGP_AJ_T0094082.1 MGP_AJ_G0035187.1 mouse_genomes_project 9 102079642 102080282 - Dnajc13 protein_coding retained_intron MGP_AJ_T0094083.1 MGP_AJ_G0035187.1 mouse_genomes_project 9 102088809 102114189 - Dnajc13 protein_coding retained_intron MGP_AJ_T0095159.1 MGP_AJ_G0035361.1 mouse_genomes_project 9 111868948 111976450 + MGP_AJ_P0095159 Clasp2 protein_coding protein_coding MGP_AJ_T0095160.1 MGP_AJ_G0035361.1 mouse_genomes_project 9 111868948 111976450 + MGP_AJ_P0095160 Clasp2 protein_coding protein_coding MGP_AJ_T0095161.1 MGP_AJ_G0035361.1 mouse_genomes_project 9 111868962 111974895 + MGP_AJ_P0095161 Clasp2 protein_coding protein_coding MGP_AJ_T0095295.1 MGP_AJ_G0035407.1 mouse_genomes_project 9 118138472 118150368 - MGP_AJ_P0095295 Gorasp1 protein_coding protein_coding MGP_AJ_T0101874.1 MGP_AJ_G0039753.1 mouse_genomes_project 9 37252214 37252973 + transcribed_processed_pseudogene processed_transcript MGP_AJ_T0101875.1 MGP_AJ_G0039753.1 mouse_genomes_project 9 37252404 37254878 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0094834.1 MGP_AJ_G0035301.1 mouse_genomes_project 9 106931036 106947190 - MGP_AJ_P0094834 Gm42641 protein_coding nonsense_mediated_decay MGP_AJ_T0094836.1 MGP_AJ_G0035301.1 mouse_genomes_project 9 106931039 106947239 - Gm42641 protein_coding retained_intron MGP_AJ_T0094838.1 MGP_AJ_G0035301.1 mouse_genomes_project 9 106931573 106933442 - MGP_AJ_P0094838 Gm42641 protein_coding protein_coding MGP_AJ_T0091928.1 MGP_AJ_G0034606.1 mouse_genomes_project 9 36333908 36354020 + MGP_AJ_P0091928 Olfr943 protein_coding protein_coding MGP_AJ_T0101541.1 MGP_AJ_G0039507.1 mouse_genomes_project 9 16341729 16341858 + Gm23048 snoRNA snoRNA MGP_AJ_T0101578.1 MGP_AJ_G0039544.1 mouse_genomes_project 9 83244138 83244274 + Gm25125 snoRNA snoRNA MGP_AJ_T0009327.1 MGP_AJ_G0007494.1 mouse_genomes_project 9 100606185 100606445 - Gm28621 lincRNA lincRNA MGP_AJ_T0092304.1 MGP_AJ_G0034747.1 mouse_genomes_project 9 46318367 46347821 - MGP_AJ_P0092304 Htr3b protein_coding protein_coding MGP_AJ_T0009252.1 MGP_AJ_G0007434.1 mouse_genomes_project 9 54915978 54922495 - Gm26631 lincRNA lincRNA MGP_AJ_T0091529.1 MGP_AJ_G0034437.1 mouse_genomes_project 9 18514652 18604556 + MGP_AJ_P0091529 Smarca4 protein_coding protein_coding MGP_AJ_T0091530.1 MGP_AJ_G0034437.1 mouse_genomes_project 9 18514652 18604543 + MGP_AJ_P0091530 Smarca4 protein_coding protein_coding MGP_AJ_T0091531.1 MGP_AJ_G0034437.1 mouse_genomes_project 9 18514747 18603692 + MGP_AJ_P0091531 Smarca4 protein_coding protein_coding MGP_AJ_T0091532.1 MGP_AJ_G0034437.1 mouse_genomes_project 9 18534238 18585095 + MGP_AJ_P0091532 Smarca4 protein_coding protein_coding MGP_AJ_T0094201.1 MGP_AJ_G0035209.1 mouse_genomes_project 9 104336818 104344225 - MGP_AJ_P0094201 Abhd14a protein_coding protein_coding MGP_AJ_T0094202.1 MGP_AJ_G0035209.1 mouse_genomes_project 9 104336821 104344225 - MGP_AJ_P0094202 Abhd14a protein_coding protein_coding MGP_AJ_T0094203.1 MGP_AJ_G0035209.1 mouse_genomes_project 9 104336823 104344110 - MGP_AJ_P0094203 Abhd14a protein_coding protein_coding MGP_AJ_T0094204.1 MGP_AJ_G0035209.1 mouse_genomes_project 9 104336823 104344064 - MGP_AJ_P0094204 Abhd14a protein_coding protein_coding MGP_AJ_T0094205.1 MGP_AJ_G0035209.1 mouse_genomes_project 9 104336877 104343990 - MGP_AJ_P0094205 Abhd14a protein_coding protein_coding MGP_AJ_T0094206.1 MGP_AJ_G0035209.1 mouse_genomes_project 9 104337149 104341539 - MGP_AJ_P0094206 Abhd14a protein_coding protein_coding MGP_AJ_T0094207.1 MGP_AJ_G0035209.1 mouse_genomes_project 9 104337452 104344167 - MGP_AJ_P0094207 Abhd14a protein_coding protein_coding MGP_AJ_T0094208.1 MGP_AJ_G0035209.1 mouse_genomes_project 9 104340126 104340844 - Abhd14a protein_coding retained_intron MGP_AJ_T0091606.1 MGP_AJ_G0034473.1 mouse_genomes_project 9 21645220 21699805 - MGP_AJ_P0091606 Tbx20 protein_coding protein_coding MGP_AJ_T0091607.1 MGP_AJ_G0034473.1 mouse_genomes_project 9 21665725 21699805 - MGP_AJ_P0091607 Tbx20 protein_coding protein_coding MGP_AJ_T0016050.1 MGP_AJ_G0014145.1 mouse_genomes_project 9 22034154 22034232 - processed_pseudogene processed_pseudogene MGP_AJ_T0091222.1 MGP_AJ_G0034314.1 mouse_genomes_project 9 5904556 5976150 + MGP_AJ_P0091222 Pgr protein_coding protein_coding MGP_AJ_T0091223.1 MGP_AJ_G0034314.1 mouse_genomes_project 9 5905142 5956177 + Pgr protein_coding retained_intron MGP_AJ_T0091224.1 MGP_AJ_G0034314.1 mouse_genomes_project 9 5905191 5972955 + MGP_AJ_P0091224 Pgr protein_coding protein_coding MGP_AJ_T0091925.1 MGP_AJ_G0034603.1 mouse_genomes_project 9 36198162 36199976 - MGP_AJ_P0091925 Olfr936 protein_coding protein_coding MGP_AJ_T0092115.1 MGP_AJ_G0034689.1 mouse_genomes_project 9 41696372 41699079 + MGP_AJ_P0092115 Rps25 protein_coding protein_coding MGP_AJ_T0018509.1 MGP_AJ_G0015711.1 mouse_genomes_project 9 37514589 37534741 + 1700110K17Rik processed_transcript processed_transcript MGP_AJ_T0018510.1 MGP_AJ_G0015711.1 mouse_genomes_project 9 37524627 37534735 + 1700110K17Rik processed_transcript processed_transcript MGP_AJ_T0016154.1 MGP_AJ_G0014249.1 mouse_genomes_project 9 97031046 97031566 - processed_pseudogene processed_pseudogene MGP_AJ_T0011084.1 MGP_AJ_G0009206.1 mouse_genomes_project 9 90088198 90088302 - Mir6386 miRNA miRNA MGP_AJ_T0005538.1 MGP_AJ_G0004671.1 mouse_genomes_project 9 105663588 105664364 + Gm37850 antisense antisense MGP_AJ_T0091379.1 MGP_AJ_G0034381.1 mouse_genomes_project 9 16700818 16701841 + MGP_AJ_P0091379 protein_coding protein_coding MGP_AJ_T0091573.1 MGP_AJ_G0034459.1 mouse_genomes_project 9 19090607 19103660 + MGP_AJ_P0091573 Zfp872 protein_coding protein_coding MGP_AJ_T0091574.1 MGP_AJ_G0034459.1 mouse_genomes_project 9 19098603 19102161 + MGP_AJ_P0091574 Zfp872 protein_coding protein_coding MGP_AJ_T0005422.1 MGP_AJ_G0004592.1 mouse_genomes_project 9 25995865 26006267 + Gm15520 antisense antisense MGP_AJ_T0009285.1 MGP_AJ_G0007461.1 mouse_genomes_project 9 78937933 78963126 + Gm26713 lincRNA lincRNA MGP_AJ_T0092411.1 MGP_AJ_G0034777.1 mouse_genomes_project 9 48475563 48497582 - MGP_AJ_P0092411 4833427G06Rik protein_coding protein_coding MGP_AJ_T0091150.1 MGP_AJ_G0034289.1 mouse_genomes_project 9 2167766 2176535 + MGP_AJ_P0091150 Casp1 protein_coding protein_coding MGP_AJ_T0005436.1 MGP_AJ_G0004604.1 mouse_genomes_project 9 43201341 43202930 - Gm16536 antisense antisense MGP_AJ_T0011060.1 MGP_AJ_G0009182.1 mouse_genomes_project 9 45884871 45884954 - Gm23653 miRNA miRNA MGP_AJ_T0092803.1 MGP_AJ_G0034898.1 mouse_genomes_project 9 59554356 59567717 - MGP_AJ_P0092803 Glce protein_coding protein_coding MGP_AJ_T0092804.1 MGP_AJ_G0034898.1 mouse_genomes_project 9 59554356 59620386 - MGP_AJ_P0092804 Glce protein_coding protein_coding MGP_AJ_T0092805.1 MGP_AJ_G0034898.1 mouse_genomes_project 9 59557119 59567951 - Glce protein_coding retained_intron MGP_AJ_T0092806.1 MGP_AJ_G0034898.1 mouse_genomes_project 9 59567578 59620431 - MGP_AJ_P0092806 Glce protein_coding protein_coding MGP_AJ_T0092807.1 MGP_AJ_G0034898.1 mouse_genomes_project 9 59577435 59620385 - Glce protein_coding processed_transcript MGP_AJ_T0011081.1 MGP_AJ_G0009203.1 mouse_genomes_project 9 75297044 75297118 + Gm25250 miRNA miRNA MGP_AJ_T0002353.1 MGP_AJ_G0002263.1 mouse_genomes_project 9 29931023 29932377 + TEC TEC MGP_AJ_T0016138.1 MGP_AJ_G0014233.1 mouse_genomes_project 9 91196657 91197660 - processed_pseudogene processed_pseudogene MGP_AJ_T0009212.1 MGP_AJ_G0007399.1 mouse_genomes_project 9 11751814 11754037 + Gm16302 lincRNA lincRNA MGP_AJ_T0095258.1 MGP_AJ_G0035393.1 mouse_genomes_project 9 117376197 117378672 + MGP_AJ_P0095258 protein_coding protein_coding MGP_AJ_T0093243.1 MGP_AJ_G0034999.1 mouse_genomes_project 9 70454932 70562196 + MGP_AJ_P0093243 Prtg protein_coding protein_coding MGP_AJ_T0093244.1 MGP_AJ_G0034999.1 mouse_genomes_project 9 70555551 70557229 + Prtg protein_coding retained_intron MGP_AJ_T0098494.1 MGP_AJ_G0036478.1 mouse_genomes_project 9 41662416 41663020 - pseudogene pseudogene MGP_AJ_T0016182.1 MGP_AJ_G0014277.1 mouse_genomes_project 9 115595842 115598866 + processed_pseudogene processed_pseudogene MGP_AJ_T0101878.1 MGP_AJ_G0039755.1 mouse_genomes_project 9 55612464 55618394 + transcribed_processed_pseudogene processed_transcript MGP_AJ_T0101879.1 MGP_AJ_G0039755.1 mouse_genomes_project 9 55617649 55618166 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0093486.1 MGP_AJ_G0035065.1 mouse_genomes_project 9 80615801 80724928 - MGP_AJ_P0093486 Phip protein_coding protein_coding MGP_AJ_T0093487.1 MGP_AJ_G0035065.1 mouse_genomes_project 9 80619964 80645954 - Phip protein_coding retained_intron MGP_AJ_T0093488.1 MGP_AJ_G0035065.1 mouse_genomes_project 9 80638541 80641826 - Phip protein_coding retained_intron MGP_AJ_T0093489.1 MGP_AJ_G0035065.1 mouse_genomes_project 9 80643609 80724820 - Phip protein_coding retained_intron MGP_AJ_T0093490.1 MGP_AJ_G0035065.1 mouse_genomes_project 9 80644190 80645674 - Phip protein_coding retained_intron MGP_AJ_T0093491.1 MGP_AJ_G0035065.1 mouse_genomes_project 9 80646746 80650695 - Phip protein_coding retained_intron MGP_AJ_T0093492.1 MGP_AJ_G0035065.1 mouse_genomes_project 9 80650237 80682209 - MGP_AJ_P0093492 Phip protein_coding nonsense_mediated_decay MGP_AJ_T0093493.1 MGP_AJ_G0035065.1 mouse_genomes_project 9 80653024 80658546 - Phip protein_coding retained_intron MGP_AJ_T0093494.1 MGP_AJ_G0035065.1 mouse_genomes_project 9 80662660 80724838 - Phip protein_coding retained_intron MGP_AJ_T0093495.1 MGP_AJ_G0035065.1 mouse_genomes_project 9 80663270 80676753 - MGP_AJ_P0093495 Phip protein_coding nonsense_mediated_decay MGP_AJ_T0093496.1 MGP_AJ_G0035065.1 mouse_genomes_project 9 80665391 80667184 - Phip protein_coding retained_intron MGP_AJ_T0093497.1 MGP_AJ_G0035065.1 mouse_genomes_project 9 80675481 80677785 - Phip protein_coding retained_intron MGP_AJ_T0093498.1 MGP_AJ_G0035065.1 mouse_genomes_project 9 80676791 80723680 - MGP_AJ_P0093498 Phip protein_coding protein_coding MGP_AJ_T0093499.1 MGP_AJ_G0035065.1 mouse_genomes_project 9 80679599 80682666 - Phip protein_coding retained_intron MGP_AJ_T0093500.1 MGP_AJ_G0035065.1 mouse_genomes_project 9 80694143 80724828 - Phip protein_coding retained_intron MGP_AJ_T0093501.1 MGP_AJ_G0035065.1 mouse_genomes_project 9 80705444 80724831 - Phip protein_coding retained_intron MGP_AJ_T0009344.1 MGP_AJ_G0007505.1 mouse_genomes_project 9 108344229 108349214 - Gm42775 lincRNA lincRNA MGP_AJ_T0095316.1 MGP_AJ_G0035415.1 mouse_genomes_project 9 118519293 118692880 + MGP_AJ_P0095316 Myrip protein_coding protein_coding MGP_AJ_T0095317.1 MGP_AJ_G0035415.1 mouse_genomes_project 9 118605180 118643351 + MGP_AJ_P0095317 Myrip protein_coding protein_coding MGP_AJ_T0095318.1 MGP_AJ_G0035415.1 mouse_genomes_project 9 118628588 118635898 + Myrip protein_coding processed_transcript MGP_AJ_T0095319.1 MGP_AJ_G0035415.1 mouse_genomes_project 9 118646095 118651169 + Myrip protein_coding processed_transcript MGP_AJ_T0094256.1 MGP_AJ_G0035219.1 mouse_genomes_project 9 104511765 104512859 + MGP_AJ_P0094256 Iqcf6 protein_coding protein_coding MGP_AJ_T0002408.1 MGP_AJ_G0002317.1 mouse_genomes_project 9 87945704 87949657 - TEC TEC MGP_AJ_T0100266.1 MGP_AJ_G0038232.1 mouse_genomes_project 9 43224104 43224203 - Gm24646 snRNA snRNA MGP_AJ_T0094009.1 MGP_AJ_G0035174.1 mouse_genomes_project 9 101024990 101038959 - MGP_AJ_P0094009 Srprb protein_coding protein_coding MGP_AJ_T0094010.1 MGP_AJ_G0035174.1 mouse_genomes_project 9 101026048 101038951 - Srprb protein_coding retained_intron MGP_AJ_T0094012.1 MGP_AJ_G0035174.1 mouse_genomes_project 9 101027261 101029172 - Srprb protein_coding processed_transcript MGP_AJ_T0094231.1 MGP_AJ_G0035212.1 mouse_genomes_project 9 104360271 104362249 - MGP_AJ_P0094231 Gpr62 protein_coding protein_coding MGP_AJ_T0091766.1 MGP_AJ_G0034517.1 mouse_genomes_project 9 32516283 32649139 + MGP_AJ_P0091766 Pate2 protein_coding protein_coding MGP_AJ_T0091767.1 MGP_AJ_G0034517.1 mouse_genomes_project 9 32519875 32592317 + Pate2 protein_coding processed_transcript MGP_AJ_T0091770.1 MGP_AJ_G0034517.1 mouse_genomes_project 9 32629332 32632583 + MGP_AJ_P0091770 Pate2 protein_coding protein_coding MGP_AJ_T0091771.1 MGP_AJ_G0034517.1 mouse_genomes_project 9 32629344 32631109 + Pate2 protein_coding retained_intron MGP_AJ_T0095354.1 MGP_AJ_G0035425.1 mouse_genomes_project 9 119848493 119878853 + MGP_AJ_P0095354 Vipr1 protein_coding protein_coding MGP_AJ_T0095355.1 MGP_AJ_G0035425.1 mouse_genomes_project 9 119848830 119866159 + Vipr1 protein_coding processed_transcript MGP_AJ_T0095356.1 MGP_AJ_G0035425.1 mouse_genomes_project 9 119870502 119871795 + Vipr1 protein_coding retained_intron MGP_AJ_T0095357.1 MGP_AJ_G0035425.1 mouse_genomes_project 9 119874604 119875408 + Vipr1 protein_coding retained_intron MGP_AJ_T0101587.1 MGP_AJ_G0039553.1 mouse_genomes_project 9 97765132 97765266 + Gm23594 snoRNA snoRNA MGP_AJ_T0091884.1 MGP_AJ_G0034568.1 mouse_genomes_project 9 35339002 35339944 + MGP_AJ_P0091884 Olfr143 protein_coding protein_coding MGP_AJ_T0092412.1 MGP_AJ_G0034778.1 mouse_genomes_project 9 48511473 48515170 + MGP_AJ_P0092412 Btg4 protein_coding protein_coding MGP_AJ_T0016115.1 MGP_AJ_G0014210.1 mouse_genomes_project 9 81722878 81727134 - processed_pseudogene processed_pseudogene MGP_AJ_T0100313.1 MGP_AJ_G0038279.1 mouse_genomes_project 9 113006780 113006884 + Gm23889 snRNA snRNA MGP_AJ_T0095200.1 MGP_AJ_G0035381.1 mouse_genomes_project 9 114749582 115447560 - MGP_AJ_P0095200 Rbms3 protein_coding protein_coding MGP_AJ_T0095201.1 MGP_AJ_G0035381.1 mouse_genomes_project 9 114754138 115447576 - MGP_AJ_P0095201 Rbms3 protein_coding protein_coding MGP_AJ_T0095202.1 MGP_AJ_G0035381.1 mouse_genomes_project 9 114754421 115012642 - MGP_AJ_P0095202 Rbms3 protein_coding protein_coding MGP_AJ_T0095203.1 MGP_AJ_G0035381.1 mouse_genomes_project 9 114754856 115830525 - MGP_AJ_P0095203 Rbms3 protein_coding protein_coding MGP_AJ_T0095204.1 MGP_AJ_G0035381.1 mouse_genomes_project 9 114754856 115447223 - MGP_AJ_P0095204 Rbms3 protein_coding protein_coding MGP_AJ_T0095205.1 MGP_AJ_G0035381.1 mouse_genomes_project 9 114754857 115447214 - MGP_AJ_P0095205 Rbms3 protein_coding protein_coding MGP_AJ_T0095206.1 MGP_AJ_G0035381.1 mouse_genomes_project 9 114755347 115447580 - MGP_AJ_P0095206 Rbms3 protein_coding protein_coding MGP_AJ_T0095207.1 MGP_AJ_G0035381.1 mouse_genomes_project 9 114759698 115012655 - MGP_AJ_P0095207 Rbms3 protein_coding protein_coding MGP_AJ_T0095208.1 MGP_AJ_G0035381.1 mouse_genomes_project 9 114863286 115447579 - Rbms3 protein_coding retained_intron MGP_AJ_T0095209.1 MGP_AJ_G0035381.1 mouse_genomes_project 9 114995344 115446898 - MGP_AJ_P0095209 Rbms3 protein_coding protein_coding MGP_AJ_T0095210.1 MGP_AJ_G0035381.1 mouse_genomes_project 9 115038123 115447576 - Rbms3 protein_coding processed_transcript MGP_AJ_T0095211.1 MGP_AJ_G0035381.1 mouse_genomes_project 9 115135491 115446694 - Rbms3 protein_coding processed_transcript MGP_AJ_T0095196.1 MGP_AJ_G0035378.1 mouse_genomes_project 9 113399311 113468019 - MGP_AJ_P0095196 Stt3b protein_coding protein_coding MGP_AJ_T0093233.1 MGP_AJ_G0034998.1 mouse_genomes_project 9 70302629 70390612 + MGP_AJ_P0093233 Nedd4 protein_coding protein_coding MGP_AJ_T0093234.1 MGP_AJ_G0034998.1 mouse_genomes_project 9 70302721 70312452 + Nedd4 protein_coding retained_intron MGP_AJ_T0093235.1 MGP_AJ_G0034998.1 mouse_genomes_project 9 70302765 70361401 + MGP_AJ_P0093235 Nedd4 protein_coding protein_coding MGP_AJ_T0093236.1 MGP_AJ_G0034998.1 mouse_genomes_project 9 70302770 70352860 + MGP_AJ_P0093236 Nedd4 protein_coding protein_coding MGP_AJ_T0093237.1 MGP_AJ_G0034998.1 mouse_genomes_project 9 70302773 70303584 + Nedd4 protein_coding processed_transcript MGP_AJ_T0093238.1 MGP_AJ_G0034998.1 mouse_genomes_project 9 70308953 70312433 + Nedd4 protein_coding retained_intron MGP_AJ_T0093239.1 MGP_AJ_G0034998.1 mouse_genomes_project 9 70308964 70360966 + MGP_AJ_P0093239 Nedd4 protein_coding protein_coding MGP_AJ_T0093240.1 MGP_AJ_G0034998.1 mouse_genomes_project 9 70380277 70388919 + MGP_AJ_P0093240 Nedd4 protein_coding nonsense_mediated_decay MGP_AJ_T0093241.1 MGP_AJ_G0034998.1 mouse_genomes_project 9 70382251 70387914 + Nedd4 protein_coding retained_intron MGP_AJ_T0093242.1 MGP_AJ_G0034998.1 mouse_genomes_project 9 70386608 70388024 + Nedd4 protein_coding retained_intron MGP_AJ_T0092368.1 MGP_AJ_G0034770.1 mouse_genomes_project 9 48139980 48143870 + MGP_AJ_P0092368 Cryab protein_coding protein_coding MGP_AJ_T0009354.1 MGP_AJ_G0007512.1 mouse_genomes_project 9 116604602 116606603 - Platr11 lincRNA lincRNA MGP_AJ_T0101529.1 MGP_AJ_G0039495.1 mouse_genomes_project 9 193726 193856 + Gm24918 snoRNA snoRNA MGP_AJ_T0094119.1 MGP_AJ_G0035195.1 mouse_genomes_project 9 103265701 103320427 - MGP_AJ_P0094119 Atp2c1 protein_coding nonsense_mediated_decay MGP_AJ_T0094120.1 MGP_AJ_G0035195.1 mouse_genomes_project 9 103265701 103379897 - MGP_AJ_P0094120 Atp2c1 protein_coding protein_coding MGP_AJ_T0094121.1 MGP_AJ_G0035195.1 mouse_genomes_project 9 103265708 103353745 - MGP_AJ_P0094121 Atp2c1 protein_coding protein_coding MGP_AJ_T0094122.1 MGP_AJ_G0035195.1 mouse_genomes_project 9 103271489 103354422 - MGP_AJ_P0094122 Atp2c1 protein_coding protein_coding MGP_AJ_T0094123.1 MGP_AJ_G0035195.1 mouse_genomes_project 9 103271869 103354461 - MGP_AJ_P0094123 Atp2c1 protein_coding protein_coding MGP_AJ_T0094124.1 MGP_AJ_G0035195.1 mouse_genomes_project 9 103271870 103380007 - MGP_AJ_P0094124 Atp2c1 protein_coding protein_coding MGP_AJ_T0094125.1 MGP_AJ_G0035195.1 mouse_genomes_project 9 103273432 103297270 - Atp2c1 protein_coding processed_transcript MGP_AJ_T0094126.1 MGP_AJ_G0035195.1 mouse_genomes_project 9 103275218 103278956 - Atp2c1 protein_coding retained_intron MGP_AJ_T0094127.1 MGP_AJ_G0035195.1 mouse_genomes_project 9 103280772 103293422 - Atp2c1 protein_coding retained_intron MGP_AJ_T0094128.1 MGP_AJ_G0035195.1 mouse_genomes_project 9 103283461 103354405 - MGP_AJ_P0094128 Atp2c1 protein_coding protein_coding MGP_AJ_T0094129.1 MGP_AJ_G0035195.1 mouse_genomes_project 9 103295872 103302796 - Atp2c1 protein_coding retained_intron MGP_AJ_T0094130.1 MGP_AJ_G0035195.1 mouse_genomes_project 9 103305513 103353787 - Atp2c1 protein_coding processed_transcript MGP_AJ_T0094131.1 MGP_AJ_G0035195.1 mouse_genomes_project 9 103311585 103329741 - MGP_AJ_P0094131 Atp2c1 protein_coding protein_coding MGP_AJ_T0094132.1 MGP_AJ_G0035195.1 mouse_genomes_project 9 103312555 103354375 - MGP_AJ_P0094132 Atp2c1 protein_coding protein_coding MGP_AJ_T0094133.1 MGP_AJ_G0035195.1 mouse_genomes_project 9 103313219 103354823 - Atp2c1 protein_coding retained_intron MGP_AJ_T0094134.1 MGP_AJ_G0035195.1 mouse_genomes_project 9 103313275 103353938 - MGP_AJ_P0094134 Atp2c1 protein_coding protein_coding MGP_AJ_T0094135.1 MGP_AJ_G0035195.1 mouse_genomes_project 9 103319004 103386074 - Atp2c1 protein_coding processed_transcript MGP_AJ_T0094136.1 MGP_AJ_G0035195.1 mouse_genomes_project 9 103319004 103354811 - MGP_AJ_P0094136 Atp2c1 protein_coding protein_coding MGP_AJ_T0094137.1 MGP_AJ_G0035195.1 mouse_genomes_project 9 103320413 103354433 - MGP_AJ_P0094137 Atp2c1 protein_coding protein_coding MGP_AJ_T0094138.1 MGP_AJ_G0035195.1 mouse_genomes_project 9 103324030 103353992 - MGP_AJ_P0094138 Atp2c1 protein_coding protein_coding MGP_AJ_T0094139.1 MGP_AJ_G0035195.1 mouse_genomes_project 9 103328453 103354433 - Atp2c1 protein_coding retained_intron MGP_AJ_T0094140.1 MGP_AJ_G0035195.1 mouse_genomes_project 9 103378751 103380164 - Atp2c1 protein_coding retained_intron MGP_AJ_T0093854.1 MGP_AJ_G0035138.1 mouse_genomes_project 9 96363045 96366641 + Copb2 protein_coding retained_intron MGP_AJ_T0093855.1 MGP_AJ_G0035138.1 mouse_genomes_project 9 96363055 96388165 + MGP_AJ_P0093855 Copb2 protein_coding protein_coding MGP_AJ_T0093856.1 MGP_AJ_G0035138.1 mouse_genomes_project 9 96379733 96381005 + Copb2 protein_coding retained_intron MGP_AJ_T0093857.1 MGP_AJ_G0035138.1 mouse_genomes_project 9 96386627 96387612 + Copb2 protein_coding retained_intron MGP_AJ_T0093858.1 MGP_AJ_G0035138.1 mouse_genomes_project 9 96387128 96387814 + Copb2 protein_coding retained_intron MGP_AJ_T0093859.1 MGP_AJ_G0035138.1 mouse_genomes_project 9 96387329 96388044 + Copb2 protein_coding retained_intron MGP_AJ_T0018596.1 MGP_AJ_G0015743.1 mouse_genomes_project 9 121886837 121911695 + Gm17200 processed_transcript processed_transcript MGP_AJ_T0092735.1 MGP_AJ_G0034884.1 mouse_genomes_project 9 57081372 57115830 + MGP_AJ_P0092735 Parp6 protein_coding protein_coding MGP_AJ_T0099109.1 MGP_AJ_G0037080.1 mouse_genomes_project 9 53583281 53584756 - Gm29322 sense_intronic sense_intronic MGP_AJ_T0094270.1 MGP_AJ_G0035222.1 mouse_genomes_project 9 104573400 104680480 - MGP_AJ_P0094270 Rad54l2 protein_coding protein_coding MGP_AJ_T0094271.1 MGP_AJ_G0035222.1 mouse_genomes_project 9 104574107 104578615 - MGP_AJ_P0094271 Rad54l2 protein_coding protein_coding MGP_AJ_T0094272.1 MGP_AJ_G0035222.1 mouse_genomes_project 9 104611921 104612859 - MGP_AJ_P0094272 Rad54l2 protein_coding protein_coding MGP_AJ_T0094273.1 MGP_AJ_G0035222.1 mouse_genomes_project 9 104678048 104680462 - Rad54l2 protein_coding retained_intron MGP_AJ_T0092481.1 MGP_AJ_G0034808.1 mouse_genomes_project 9 51942397 52000002 - MGP_AJ_P0092481 Acsbg1 protein_coding protein_coding MGP_AJ_T0092482.1 MGP_AJ_G0034808.1 mouse_genomes_project 9 51966903 51981319 - MGP_AJ_P0092482 Acsbg1 protein_coding protein_coding MGP_AJ_T0092483.1 MGP_AJ_G0034808.1 mouse_genomes_project 9 51966929 51985507 - MGP_AJ_P0092483 Acsbg1 protein_coding protein_coding MGP_AJ_T0092484.1 MGP_AJ_G0034808.1 mouse_genomes_project 9 51966949 51999827 - MGP_AJ_P0092484 Acsbg1 protein_coding protein_coding MGP_AJ_T0092485.1 MGP_AJ_G0034808.1 mouse_genomes_project 9 51984343 51985378 - Acsbg1 protein_coding retained_intron MGP_AJ_T0016110.1 MGP_AJ_G0014205.1 mouse_genomes_project 9 79936139 79936890 + processed_pseudogene processed_pseudogene MGP_AJ_T0094486.1 MGP_AJ_G0035251.1 mouse_genomes_project 9 105811005 105824523 + MGP_AJ_P0094486 Mst1r protein_coding protein_coding MGP_AJ_T0094487.1 MGP_AJ_G0035251.1 mouse_genomes_project 9 105811039 105824521 + MGP_AJ_P0094487 Mst1r protein_coding nonsense_mediated_decay MGP_AJ_T0094488.1 MGP_AJ_G0035251.1 mouse_genomes_project 9 105819144 105819870 + Mst1r protein_coding retained_intron MGP_AJ_T0094489.1 MGP_AJ_G0035251.1 mouse_genomes_project 9 105820365 105821046 + Mst1r protein_coding retained_intron MGP_AJ_T0091488.1 MGP_AJ_G0034426.1 mouse_genomes_project 9 18176312 18179059 - MGP_AJ_P0091488 Cdkn2d protein_coding protein_coding MGP_AJ_T0093847.1 MGP_AJ_G0035135.1 mouse_genomes_project 9 96100765 96101348 + MGP_AJ_P0093847 protein_coding protein_coding MGP_AJ_T0093623.1 MGP_AJ_G0035090.1 mouse_genomes_project 9 86206677 86243550 - MGP_AJ_P0093623 Syncrip protein_coding protein_coding MGP_AJ_T0093624.1 MGP_AJ_G0035090.1 mouse_genomes_project 9 86212105 86240335 - MGP_AJ_P0093624 Syncrip protein_coding protein_coding MGP_AJ_T0093625.1 MGP_AJ_G0035090.1 mouse_genomes_project 9 86212307 86243106 - MGP_AJ_P0093625 Syncrip protein_coding protein_coding MGP_AJ_T0093626.1 MGP_AJ_G0035090.1 mouse_genomes_project 9 86212356 86243171 - MGP_AJ_P0093626 Syncrip protein_coding protein_coding MGP_AJ_T0093627.1 MGP_AJ_G0035090.1 mouse_genomes_project 9 86213605 86243124 - MGP_AJ_P0093627 Syncrip protein_coding nonsense_mediated_decay MGP_AJ_T0093628.1 MGP_AJ_G0035090.1 mouse_genomes_project 9 86215242 86240323 - MGP_AJ_P0093628 Syncrip protein_coding protein_coding MGP_AJ_T0093629.1 MGP_AJ_G0035090.1 mouse_genomes_project 9 86215791 86240323 - MGP_AJ_P0093629 Syncrip protein_coding protein_coding MGP_AJ_T0093630.1 MGP_AJ_G0035090.1 mouse_genomes_project 9 86224149 86240314 - Syncrip protein_coding retained_intron MGP_AJ_T0093631.1 MGP_AJ_G0035090.1 mouse_genomes_project 9 86236412 86240739 - MGP_AJ_P0093631 Syncrip protein_coding protein_coding MGP_AJ_T0093632.1 MGP_AJ_G0035090.1 mouse_genomes_project 9 86238294 86240794 - Syncrip protein_coding retained_intron MGP_AJ_T0093633.1 MGP_AJ_G0035090.1 mouse_genomes_project 9 86239231 86243565 - MGP_AJ_P0093633 Syncrip protein_coding protein_coding MGP_AJ_T0091552.1 MGP_AJ_G0034449.1 mouse_genomes_project 9 18875707 18893598 - MGP_AJ_P0091552 Rgl3 protein_coding protein_coding MGP_AJ_T0093547.1 MGP_AJ_G0035074.1 mouse_genomes_project 9 83615263 83620487 + MGP_AJ_P0093547 Tpbg protein_coding protein_coding MGP_AJ_T0093548.1 MGP_AJ_G0035074.1 mouse_genomes_project 9 83615748 83620487 + MGP_AJ_P0093548 Tpbg protein_coding protein_coding MGP_AJ_T0093549.1 MGP_AJ_G0035074.1 mouse_genomes_project 9 83616823 83617385 + Tpbg protein_coding processed_transcript MGP_AJ_T0002383.1 MGP_AJ_G0002293.1 mouse_genomes_project 9 70669086 70670930 + TEC TEC MGP_AJ_T0093355.1 MGP_AJ_G0035031.1 mouse_genomes_project 9 74654080 74749256 - MGP_AJ_P0093355 Tinag protein_coding nonsense_mediated_decay MGP_AJ_T0093356.1 MGP_AJ_G0035031.1 mouse_genomes_project 9 74654080 74749301 - MGP_AJ_P0093356 Tinag protein_coding protein_coding MGP_AJ_T0009300.1 MGP_AJ_G0007472.1 mouse_genomes_project 9 88645504 88650403 - Gm28703 lincRNA lincRNA MGP_AJ_T0011749.1 MGP_AJ_G0009871.1 mouse_genomes_project 9 111453070 111453367 + Gm22492 misc_RNA misc_RNA MGP_AJ_T0016044.1 MGP_AJ_G0014139.1 mouse_genomes_project 9 11342951 11344017 - processed_pseudogene processed_pseudogene MGP_AJ_T0092613.1 MGP_AJ_G0034847.1 mouse_genomes_project 9 54887976 54889324 + MGP_AJ_P0092613 Rpp25 protein_coding protein_coding MGP_AJ_T0002473.1 MGP_AJ_G0002382.1 mouse_genomes_project 9 116602970 116603808 - TEC TEC MGP_AJ_T0016095.1 MGP_AJ_G0014190.1 mouse_genomes_project 9 73371017 73372002 - processed_pseudogene processed_pseudogene MGP_AJ_T0101576.1 MGP_AJ_G0039542.1 mouse_genomes_project 9 75739211 75739338 - Gm23609 snoRNA snoRNA MGP_AJ_T0091575.1 MGP_AJ_G0034460.1 mouse_genomes_project 9 19133403 19151846 + MGP_AJ_P0091575 Zfp809 protein_coding protein_coding MGP_AJ_T0100260.1 MGP_AJ_G0038226.1 mouse_genomes_project 9 32416421 32416583 + Gm25630 snRNA snRNA MGP_AJ_T0016064.1 MGP_AJ_G0014159.1 mouse_genomes_project 9 41631597 41632431 - processed_pseudogene processed_pseudogene MGP_AJ_T0093035.1 MGP_AJ_G0034962.1 mouse_genomes_project 9 64407870 64486146 - MGP_AJ_P0093035 Rab8b protein_coding protein_coding MGP_AJ_T0091784.1 MGP_AJ_G0034531.1 mouse_genomes_project 9 33658210 33661059 - MGP_AJ_P0091784 A630095E13Rik protein_coding protein_coding MGP_AJ_T0091785.1 MGP_AJ_G0034531.1 mouse_genomes_project 9 33658210 33661059 - MGP_AJ_P0091785 A630095E13Rik protein_coding protein_coding MGP_AJ_T0091786.1 MGP_AJ_G0034531.1 mouse_genomes_project 9 33658212 33666170 - A630095E13Rik protein_coding retained_intron MGP_AJ_T0092885.1 MGP_AJ_G0034920.1 mouse_genomes_project 9 61799856 61825255 + MGP_AJ_P0092885 Tipin protein_coding unknown_likely_coding MGP_AJ_T0011738.1 MGP_AJ_G0009860.1 mouse_genomes_project 9 59517894 59517987 + Gm23221 misc_RNA misc_RNA MGP_AJ_T0016078.1 MGP_AJ_G0014173.1 mouse_genomes_project 9 68488278 68489121 + processed_pseudogene processed_pseudogene MGP_AJ_T0091954.1 MGP_AJ_G0034626.1 mouse_genomes_project 9 36963222 36964155 + MGP_AJ_P0091954 Olfr967 protein_coding protein_coding MGP_AJ_T0095189.1 MGP_AJ_G0035377.1 mouse_genomes_project 9 113138084 113389986 + MGP_AJ_P0095189 Osbpl10 protein_coding protein_coding MGP_AJ_T0095190.1 MGP_AJ_G0035377.1 mouse_genomes_project 9 113158770 113324839 + MGP_AJ_P0095190 Osbpl10 protein_coding protein_coding MGP_AJ_T0095191.1 MGP_AJ_G0035377.1 mouse_genomes_project 9 113176686 113388936 + MGP_AJ_P0095191 Osbpl10 protein_coding nonsense_mediated_decay MGP_AJ_T0095192.1 MGP_AJ_G0035377.1 mouse_genomes_project 9 113213617 113229882 + MGP_AJ_P0095192 Osbpl10 protein_coding protein_coding MGP_AJ_T0095193.1 MGP_AJ_G0035377.1 mouse_genomes_project 9 113229848 113388940 + MGP_AJ_P0095193 Osbpl10 protein_coding protein_coding MGP_AJ_T0095194.1 MGP_AJ_G0035377.1 mouse_genomes_project 9 113244361 113375643 + Osbpl10 protein_coding processed_transcript MGP_AJ_T0095195.1 MGP_AJ_G0035377.1 mouse_genomes_project 9 113275881 113374055 + Osbpl10 protein_coding processed_transcript MGP_AJ_T0016131.1 MGP_AJ_G0014226.1 mouse_genomes_project 9 88567361 88567524 - processed_pseudogene processed_pseudogene MGP_AJ_T0011065.1 MGP_AJ_G0009187.1 mouse_genomes_project 9 50772898 50772980 - Mir130c miRNA miRNA MGP_AJ_T0011069.1 MGP_AJ_G0009191.1 mouse_genomes_project 9 59743732 59743837 - Gm25603 miRNA miRNA MGP_AJ_T0016114.1 MGP_AJ_G0014209.1 mouse_genomes_project 9 81252216 81252622 + processed_pseudogene processed_pseudogene MGP_AJ_T0094896.1 MGP_AJ_G0035320.1 mouse_genomes_project 9 107925151 107943596 + MGP_AJ_P0094896 Cdc25a protein_coding protein_coding MGP_AJ_T0094897.1 MGP_AJ_G0035320.1 mouse_genomes_project 9 107925512 107931258 + MGP_AJ_P0094897 Cdc25a protein_coding nonsense_mediated_decay MGP_AJ_T0094898.1 MGP_AJ_G0035320.1 mouse_genomes_project 9 107925878 107942350 + MGP_AJ_P0094898 Cdc25a protein_coding protein_coding MGP_AJ_T0094900.1 MGP_AJ_G0035320.1 mouse_genomes_project 9 107934032 107939703 + Cdc25a protein_coding retained_intron MGP_AJ_T0094901.1 MGP_AJ_G0035320.1 mouse_genomes_project 9 107937418 107942070 + Cdc25a protein_coding retained_intron MGP_AJ_T0094902.1 MGP_AJ_G0035320.1 mouse_genomes_project 9 107938538 107939073 + Cdc25a protein_coding retained_intron MGP_AJ_T0091867.1 MGP_AJ_G0034552.1 mouse_genomes_project 9 34836095 34837286 + MGP_AJ_P0091867 Olfr874 protein_coding protein_coding MGP_AJ_T0095449.1 MGP_AJ_G0035456.1 mouse_genomes_project 9 121459903 121461635 - MGP_AJ_P0095449 Tmem158 protein_coding protein_coding MGP_AJ_T0094298.1 MGP_AJ_G0035227.1 mouse_genomes_project 9 105149670 105185525 - MGP_AJ_P0094298 Mapkapk3 protein_coding protein_coding MGP_AJ_T0094299.1 MGP_AJ_G0035227.1 mouse_genomes_project 9 105149678 105185395 - Mapkapk3 protein_coding retained_intron MGP_AJ_T0094300.1 MGP_AJ_G0035227.1 mouse_genomes_project 9 105150788 105152035 - Mapkapk3 protein_coding retained_intron MGP_AJ_T0094301.1 MGP_AJ_G0035227.1 mouse_genomes_project 9 105150927 105184992 - MGP_AJ_P0094301 Mapkapk3 protein_coding protein_coding MGP_AJ_T0094302.1 MGP_AJ_G0035227.1 mouse_genomes_project 9 105153520 105156672 - Mapkapk3 protein_coding processed_transcript MGP_AJ_T0094303.1 MGP_AJ_G0035227.1 mouse_genomes_project 9 105154292 105185427 - Mapkapk3 protein_coding retained_intron MGP_AJ_T0094304.1 MGP_AJ_G0035227.1 mouse_genomes_project 9 105158460 105176641 - MGP_AJ_P0094304 Mapkapk3 protein_coding protein_coding MGP_AJ_T0094305.1 MGP_AJ_G0035227.1 mouse_genomes_project 9 105180356 105185427 - Mapkapk3 protein_coding processed_transcript MGP_AJ_T0094862.1 MGP_AJ_G0035309.1 mouse_genomes_project 9 107113966 107739633 - MGP_AJ_P0094862 Fbxw16 protein_coding protein_coding MGP_AJ_T0092205.1 MGP_AJ_G0034717.1 mouse_genomes_project 9 42648919 42677694 + MGP_AJ_P0092205 Tmprss13 protein_coding protein_coding MGP_AJ_T0093963.1 MGP_AJ_G0035164.1 mouse_genomes_project 9 99747485 100186059 - MGP_AJ_P0093963 Ephb1 protein_coding protein_coding MGP_AJ_T0093964.1 MGP_AJ_G0035164.1 mouse_genomes_project 9 99747928 100186059 - MGP_AJ_P0093964 Ephb1 protein_coding protein_coding MGP_AJ_T0093966.1 MGP_AJ_G0035164.1 mouse_genomes_project 9 99866233 100186059 - MGP_AJ_P0093966 Ephb1 protein_coding protein_coding MGP_AJ_T0091166.1 MGP_AJ_G0034294.1 mouse_genomes_project 9 3862340 4120287 - MGP_AJ_P0091166 Dync2h1 protein_coding protein_coding MGP_AJ_T0091167.1 MGP_AJ_G0034294.1 mouse_genomes_project 9 3862340 4112886 - MGP_AJ_P0091167 Dync2h1 protein_coding protein_coding MGP_AJ_T0091168.1 MGP_AJ_G0034294.1 mouse_genomes_project 9 3863141 4112797 - MGP_AJ_P0091168 Dync2h1 protein_coding protein_coding MGP_AJ_T0091169.1 MGP_AJ_G0034294.1 mouse_genomes_project 9 3863302 4112797 - MGP_AJ_P0091169 Dync2h1 protein_coding unknown_likely_coding MGP_AJ_T0091170.1 MGP_AJ_G0034294.1 mouse_genomes_project 9 3874503 3890760 - Dync2h1 protein_coding retained_intron MGP_AJ_T0091171.1 MGP_AJ_G0034294.1 mouse_genomes_project 9 3963709 4045607 - MGP_AJ_P0091171 Dync2h1 protein_coding nonsense_mediated_decay MGP_AJ_T0091172.1 MGP_AJ_G0034294.1 mouse_genomes_project 9 4076941 4112884 - Dync2h1 protein_coding retained_intron MGP_AJ_T0091173.1 MGP_AJ_G0034294.1 mouse_genomes_project 9 4083682 4112805 - MGP_AJ_P0091173 Dync2h1 protein_coding protein_coding MGP_AJ_T0009292.1 MGP_AJ_G0007466.1 mouse_genomes_project 9 82530444 82541782 + 4930554C24Rik lincRNA lincRNA MGP_AJ_T0094194.1 MGP_AJ_G0035208.1 mouse_genomes_project 9 104329721 104335037 - MGP_AJ_P0094194 Acy1 protein_coding protein_coding MGP_AJ_T0094195.1 MGP_AJ_G0035208.1 mouse_genomes_project 9 104329724 104334895 - Acy1 protein_coding retained_intron MGP_AJ_T0094196.1 MGP_AJ_G0035208.1 mouse_genomes_project 9 104329730 104331434 - Acy1 protein_coding retained_intron MGP_AJ_T0094197.1 MGP_AJ_G0035208.1 mouse_genomes_project 9 104331439 104333099 - Acy1 protein_coding retained_intron MGP_AJ_T0094198.1 MGP_AJ_G0035208.1 mouse_genomes_project 9 104331682 104334920 - MGP_AJ_P0094198 Acy1 protein_coding nonsense_mediated_decay MGP_AJ_T0094199.1 MGP_AJ_G0035208.1 mouse_genomes_project 9 104331813 104335037 - MGP_AJ_P0094199 Acy1 protein_coding protein_coding MGP_AJ_T0094200.1 MGP_AJ_G0035208.1 mouse_genomes_project 9 104333614 104334905 - MGP_AJ_P0094200 Acy1 protein_coding protein_coding MGP_AJ_T0094106.1 MGP_AJ_G0035193.1 mouse_genomes_project 9 103030260 103257733 - MGP_AJ_P0094106 Nek11 protein_coding protein_coding MGP_AJ_T0094107.1 MGP_AJ_G0035193.1 mouse_genomes_project 9 103031681 103255232 - MGP_AJ_P0094107 Nek11 protein_coding nonsense_mediated_decay MGP_AJ_T0094108.1 MGP_AJ_G0035193.1 mouse_genomes_project 9 103109375 103257496 - MGP_AJ_P0094108 Nek11 protein_coding nonsense_mediated_decay MGP_AJ_T0094109.1 MGP_AJ_G0035193.1 mouse_genomes_project 9 103161311 103257467 - MGP_AJ_P0094109 Nek11 protein_coding protein_coding MGP_AJ_T0091348.1 MGP_AJ_G0034353.1 mouse_genomes_project 9 15324465 15326948 + MGP_AJ_P0091348 Gm5612 protein_coding protein_coding MGP_AJ_T0095500.1 MGP_AJ_G0035474.1 mouse_genomes_project 9 122723126 122742659 - MGP_AJ_P0095500 protein_coding unknown_likely_coding MGP_AJ_T0095501.1 MGP_AJ_G0035474.1 mouse_genomes_project 9 122725393 122725647 - MGP_AJ_P0095501 protein_coding protein_coding MGP_AJ_T0093248.1 MGP_AJ_G0035002.1 mouse_genomes_project 9 70603832 70661113 + MGP_AJ_P0093248 Gm44503 protein_coding nonsense_mediated_decay MGP_AJ_T0093188.1 MGP_AJ_G0034994.1 mouse_genomes_project 9 69905867 69995844 + MGP_AJ_P0093188 Zfp280d protein_coding protein_coding MGP_AJ_T0093189.1 MGP_AJ_G0034994.1 mouse_genomes_project 9 69905886 69973993 + MGP_AJ_P0093189 Zfp280d protein_coding protein_coding MGP_AJ_T0093190.1 MGP_AJ_G0034994.1 mouse_genomes_project 9 69905886 69996731 + MGP_AJ_P0093190 Zfp280d protein_coding protein_coding MGP_AJ_T0093191.1 MGP_AJ_G0034994.1 mouse_genomes_project 9 69905913 69995364 + MGP_AJ_P0093191 Zfp280d protein_coding nonsense_mediated_decay MGP_AJ_T0093192.1 MGP_AJ_G0034994.1 mouse_genomes_project 9 69905914 69996451 + MGP_AJ_P0093192 Zfp280d protein_coding nonsense_mediated_decay MGP_AJ_T0093193.1 MGP_AJ_G0034994.1 mouse_genomes_project 9 69905922 69919601 + Zfp280d protein_coding processed_transcript MGP_AJ_T0093194.1 MGP_AJ_G0034994.1 mouse_genomes_project 9 69905986 69918293 + Zfp280d protein_coding processed_transcript MGP_AJ_T0093195.1 MGP_AJ_G0034994.1 mouse_genomes_project 9 69905988 69931344 + Zfp280d protein_coding retained_intron MGP_AJ_T0093196.1 MGP_AJ_G0034994.1 mouse_genomes_project 9 69906011 69996715 + MGP_AJ_P0093196 Zfp280d protein_coding protein_coding MGP_AJ_T0093197.1 MGP_AJ_G0034994.1 mouse_genomes_project 9 69927473 69996470 + MGP_AJ_P0093197 Zfp280d protein_coding nonsense_mediated_decay MGP_AJ_T0093198.1 MGP_AJ_G0034994.1 mouse_genomes_project 9 69930895 69955950 + MGP_AJ_P0093198 Zfp280d protein_coding nonsense_mediated_decay MGP_AJ_T0093199.1 MGP_AJ_G0034994.1 mouse_genomes_project 9 69940056 69942154 + Zfp280d protein_coding retained_intron MGP_AJ_T0093200.1 MGP_AJ_G0034994.1 mouse_genomes_project 9 69945001 69946579 + Zfp280d protein_coding processed_transcript MGP_AJ_T0093201.1 MGP_AJ_G0034994.1 mouse_genomes_project 9 69945041 69957009 + MGP_AJ_P0093201 Zfp280d protein_coding nonsense_mediated_decay MGP_AJ_T0093202.1 MGP_AJ_G0034994.1 mouse_genomes_project 9 69945563 69952652 + Zfp280d protein_coding retained_intron MGP_AJ_T0093203.1 MGP_AJ_G0034994.1 mouse_genomes_project 9 69955956 69962208 + Zfp280d protein_coding retained_intron MGP_AJ_T0093204.1 MGP_AJ_G0034994.1 mouse_genomes_project 9 69961146 69963236 + Zfp280d protein_coding retained_intron MGP_AJ_T0093205.1 MGP_AJ_G0034994.1 mouse_genomes_project 9 69963980 69967484 + Zfp280d protein_coding retained_intron MGP_AJ_T0093206.1 MGP_AJ_G0034994.1 mouse_genomes_project 9 69964026 69994900 + MGP_AJ_P0093206 Zfp280d protein_coding protein_coding MGP_AJ_T0093207.1 MGP_AJ_G0034994.1 mouse_genomes_project 9 69971648 69995621 + MGP_AJ_P0093207 Zfp280d protein_coding protein_coding MGP_AJ_T0093208.1 MGP_AJ_G0034994.1 mouse_genomes_project 9 69993134 69996581 + MGP_AJ_P0093208 Zfp280d protein_coding protein_coding MGP_AJ_T0009356.1 MGP_AJ_G0007514.1 mouse_genomes_project 9 117662437 117667056 - 4930516B21Rik lincRNA lincRNA MGP_AJ_T0091459.1 MGP_AJ_G0034413.1 mouse_genomes_project 9 17892532 17907825 + MGP_AJ_P0091459 Icam1 protein_coding protein_coding MGP_AJ_T0093167.1 MGP_AJ_G0034993.1 mouse_genomes_project 9 69463763 69727989 - MGP_AJ_P0093167 Tcf12 protein_coding protein_coding MGP_AJ_T0093168.1 MGP_AJ_G0034993.1 mouse_genomes_project 9 69465321 69517615 - Tcf12 protein_coding retained_intron MGP_AJ_T0093169.1 MGP_AJ_G0034993.1 mouse_genomes_project 9 69465337 69727963 - MGP_AJ_P0093169 Tcf12 protein_coding protein_coding MGP_AJ_T0093170.1 MGP_AJ_G0034993.1 mouse_genomes_project 9 69465342 69517925 - MGP_AJ_P0093170 Tcf12 protein_coding protein_coding MGP_AJ_T0093171.1 MGP_AJ_G0034993.1 mouse_genomes_project 9 69465346 69727948 - MGP_AJ_P0093171 Tcf12 protein_coding nonsense_mediated_decay MGP_AJ_T0093172.1 MGP_AJ_G0034993.1 mouse_genomes_project 9 69465792 69727792 - MGP_AJ_P0093172 Tcf12 protein_coding protein_coding MGP_AJ_T0093173.1 MGP_AJ_G0034993.1 mouse_genomes_project 9 69466581 69728013 - MGP_AJ_P0093173 Tcf12 protein_coding protein_coding MGP_AJ_T0093174.1 MGP_AJ_G0034993.1 mouse_genomes_project 9 69470965 69517618 - MGP_AJ_P0093174 Tcf12 protein_coding protein_coding MGP_AJ_T0093175.1 MGP_AJ_G0034993.1 mouse_genomes_project 9 69470968 69727954 - MGP_AJ_P0093175 Tcf12 protein_coding protein_coding MGP_AJ_T0093176.1 MGP_AJ_G0034993.1 mouse_genomes_project 9 69479607 69727343 - MGP_AJ_P0093176 Tcf12 protein_coding protein_coding MGP_AJ_T0093177.1 MGP_AJ_G0034993.1 mouse_genomes_project 9 69489390 69505876 - Tcf12 protein_coding processed_transcript MGP_AJ_T0093178.1 MGP_AJ_G0034993.1 mouse_genomes_project 9 69497156 69517514 - MGP_AJ_P0093178 Tcf12 protein_coding nonsense_mediated_decay MGP_AJ_T0093179.1 MGP_AJ_G0034993.1 mouse_genomes_project 9 69497156 69725911 - MGP_AJ_P0093179 Tcf12 protein_coding protein_coding MGP_AJ_T0093180.1 MGP_AJ_G0034993.1 mouse_genomes_project 9 69503896 69614869 - MGP_AJ_P0093180 Tcf12 protein_coding nonsense_mediated_decay MGP_AJ_T0093181.1 MGP_AJ_G0034993.1 mouse_genomes_project 9 69504286 69614867 - MGP_AJ_P0093181 Tcf12 protein_coding nonsense_mediated_decay MGP_AJ_T0093182.1 MGP_AJ_G0034993.1 mouse_genomes_project 9 69504907 69727913 - MGP_AJ_P0093182 Tcf12 protein_coding protein_coding MGP_AJ_T0093183.1 MGP_AJ_G0034993.1 mouse_genomes_project 9 69504928 69727741 - MGP_AJ_P0093183 Tcf12 protein_coding nonsense_mediated_decay MGP_AJ_T0093184.1 MGP_AJ_G0034993.1 mouse_genomes_project 9 69505601 69544353 - MGP_AJ_P0093184 Tcf12 protein_coding protein_coding MGP_AJ_T0093185.1 MGP_AJ_G0034993.1 mouse_genomes_project 9 69506379 69727933 - MGP_AJ_P0093185 Tcf12 protein_coding nonsense_mediated_decay MGP_AJ_T0093186.1 MGP_AJ_G0034993.1 mouse_genomes_project 9 69564422 69727989 - Tcf12 protein_coding retained_intron MGP_AJ_T0093187.1 MGP_AJ_G0034993.1 mouse_genomes_project 9 69722326 69726668 - Tcf12 protein_coding retained_intron MGP_AJ_T0091968.1 MGP_AJ_G0034640.1 mouse_genomes_project 9 37288252 37289794 - MGP_AJ_P0091968 Olfr983 protein_coding protein_coding MGP_AJ_T0011036.1 MGP_AJ_G0009158.1 mouse_genomes_project 9 10509052 10509150 + Gm22643 miRNA miRNA MGP_AJ_T0091898.1 MGP_AJ_G0034582.1 mouse_genomes_project 9 35695560 35697931 + MGP_AJ_P0091898 protein_coding protein_coding MGP_AJ_T0091566.1 MGP_AJ_G0034456.1 mouse_genomes_project 9 19019980 19021161 - MGP_AJ_P0091566 Elof1 protein_coding protein_coding MGP_AJ_T0091567.1 MGP_AJ_G0034456.1 mouse_genomes_project 9 19019981 19023998 - MGP_AJ_P0091567 Elof1 protein_coding protein_coding MGP_AJ_T0005479.1 MGP_AJ_G0004632.1 mouse_genomes_project 9 76411805 76412558 - 4921509A06Rik antisense antisense MGP_AJ_T0016133.1 MGP_AJ_G0014228.1 mouse_genomes_project 9 89043836 89044259 + processed_pseudogene processed_pseudogene MGP_AJ_T0002420.1 MGP_AJ_G0002329.1 mouse_genomes_project 9 95100161 95102041 + TEC TEC MGP_AJ_T0093710.1 MGP_AJ_G0035109.1 mouse_genomes_project 9 90131226 90148789 + 1700057G04Rik protein_coding processed_transcript MGP_AJ_T0093711.1 MGP_AJ_G0035109.1 mouse_genomes_project 9 90131226 90169266 + MGP_AJ_P0093711 1700057G04Rik protein_coding protein_coding MGP_AJ_T0093712.1 MGP_AJ_G0035109.1 mouse_genomes_project 9 90131226 90183667 + MGP_AJ_P0093712 1700057G04Rik protein_coding protein_coding MGP_AJ_T0093713.1 MGP_AJ_G0035109.1 mouse_genomes_project 9 90131257 90176892 + 1700057G04Rik protein_coding processed_transcript MGP_AJ_T0093714.1 MGP_AJ_G0035109.1 mouse_genomes_project 9 90169087 90183610 + MGP_AJ_P0093714 1700057G04Rik protein_coding protein_coding MGP_AJ_T0093715.1 MGP_AJ_G0035109.1 mouse_genomes_project 9 90176905 90183667 + MGP_AJ_P0093715 1700057G04Rik protein_coding nonsense_mediated_decay MGP_AJ_T0092322.1 MGP_AJ_G0034756.1 mouse_genomes_project 9 46908952 46954313 + MGP_AJ_P0092322 Gm11149 protein_coding protein_coding MGP_AJ_T0095494.1 MGP_AJ_G0035472.1 mouse_genomes_project 9 122508997 122529789 - MGP_AJ_P0095494 2010315B03Rik protein_coding protein_coding MGP_AJ_T0095495.1 MGP_AJ_G0035472.1 mouse_genomes_project 9 122510834 122529735 - MGP_AJ_P0095495 2010315B03Rik protein_coding protein_coding MGP_AJ_T0095496.1 MGP_AJ_G0035472.1 mouse_genomes_project 9 122511024 122528992 - MGP_AJ_P0095496 2010315B03Rik protein_coding protein_coding MGP_AJ_T0095497.1 MGP_AJ_G0035472.1 mouse_genomes_project 9 122511036 122529764 - MGP_AJ_P0095497 2010315B03Rik protein_coding protein_coding MGP_AJ_T0095498.1 MGP_AJ_G0035472.1 mouse_genomes_project 9 122517871 122529764 - 2010315B03Rik protein_coding processed_transcript MGP_AJ_T0091221.1 MGP_AJ_G0034313.1 mouse_genomes_project 9 5531999 5673482 + MGP_AJ_P0091221 Trpc6 protein_coding protein_coding MGP_AJ_T0092417.1 MGP_AJ_G0034782.1 mouse_genomes_project 9 49005824 49008322 + MGP_AJ_P0092417 protein_coding protein_coding MGP_AJ_T0011086.1 MGP_AJ_G0009208.1 mouse_genomes_project 9 100136062 100136114 - Mir7243 miRNA miRNA MGP_AJ_T0100293.1 MGP_AJ_G0038259.1 mouse_genomes_project 9 81948473 81948658 + Gm26146 snRNA snRNA MGP_AJ_T0091151.1 MGP_AJ_G0034290.1 mouse_genomes_project 9 2178097 2192545 + MGP_AJ_P0091151 Casp4 protein_coding protein_coding MGP_AJ_T0091152.1 MGP_AJ_G0034290.1 mouse_genomes_project 9 2178118 2205460 + MGP_AJ_P0091152 Casp4 protein_coding protein_coding MGP_AJ_T0091153.1 MGP_AJ_G0034290.1 mouse_genomes_project 9 2178129 2198063 + Casp4 protein_coding retained_intron MGP_AJ_T0091154.1 MGP_AJ_G0034290.1 mouse_genomes_project 9 2178129 2197177 + MGP_AJ_P0091154 Casp4 protein_coding nonsense_mediated_decay MGP_AJ_T0091155.1 MGP_AJ_G0034290.1 mouse_genomes_project 9 2178134 2190572 + Casp4 protein_coding retained_intron MGP_AJ_T0091156.1 MGP_AJ_G0034290.1 mouse_genomes_project 9 2190230 2204766 + MGP_AJ_P0091156 Casp4 protein_coding nonsense_mediated_decay MGP_AJ_T0091157.1 MGP_AJ_G0034290.1 mouse_genomes_project 9 2192179 2196061 + Casp4 protein_coding retained_intron MGP_AJ_T0016076.1 MGP_AJ_G0014171.1 mouse_genomes_project 9 62834186 62834574 - processed_pseudogene processed_pseudogene MGP_AJ_T0091292.1 MGP_AJ_G0034335.1 mouse_genomes_project 9 11766778 11777358 + MGP_AJ_P0091292 Gpr83 protein_coding protein_coding MGP_AJ_T0091293.1 MGP_AJ_G0034335.1 mouse_genomes_project 9 11766822 11776879 + MGP_AJ_P0091293 Gpr83 protein_coding protein_coding MGP_AJ_T0091294.1 MGP_AJ_G0034335.1 mouse_genomes_project 9 11771908 11777358 + Gpr83 protein_coding retained_intron MGP_AJ_T0091760.1 MGP_AJ_G0034514.1 mouse_genomes_project 9 32482647 32504523 - MGP_AJ_P0091760 Ddx25 protein_coding protein_coding MGP_AJ_T0092119.1 MGP_AJ_G0034693.1 mouse_genomes_project 9 41775287 41804148 + MGP_AJ_P0092119 Bcl9l protein_coding unknown_likely_coding MGP_AJ_T0092742.1 MGP_AJ_G0034886.1 mouse_genomes_project 9 57205378 57222617 - MGP_AJ_P0092742 Senp8 protein_coding protein_coding MGP_AJ_T0092743.1 MGP_AJ_G0034886.1 mouse_genomes_project 9 57205378 57222617 - MGP_AJ_P0092743 Senp8 protein_coding protein_coding MGP_AJ_T0093227.1 MGP_AJ_G0034997.1 mouse_genomes_project 9 70168499 70242624 + Rfx7 protein_coding processed_transcript MGP_AJ_T0093228.1 MGP_AJ_G0034997.1 mouse_genomes_project 9 70168565 70259998 + MGP_AJ_P0093228 Rfx7 protein_coding protein_coding MGP_AJ_T0093229.1 MGP_AJ_G0034997.1 mouse_genomes_project 9 70168865 70250021 + MGP_AJ_P0093229 Rfx7 protein_coding protein_coding MGP_AJ_T0093230.1 MGP_AJ_G0034997.1 mouse_genomes_project 9 70168997 70250084 + MGP_AJ_P0093230 Rfx7 protein_coding protein_coding MGP_AJ_T0093231.1 MGP_AJ_G0034997.1 mouse_genomes_project 9 70237215 70239975 + Rfx7 protein_coding retained_intron MGP_AJ_T0093232.1 MGP_AJ_G0034997.1 mouse_genomes_project 9 70247993 70250072 + Rfx7 protein_coding retained_intron MGP_AJ_T0092694.1 MGP_AJ_G0034872.1 mouse_genomes_project 9 55907887 55918997 + MGP_AJ_P0092694 6030419C18Rik protein_coding protein_coding MGP_AJ_T0098489.1 MGP_AJ_G0036473.1 mouse_genomes_project 9 15882774 15883043 - pseudogene pseudogene MGP_AJ_T0091895.1 MGP_AJ_G0034579.1 mouse_genomes_project 9 35603224 35604160 + MGP_AJ_P0091895 Olfr906 protein_coding protein_coding MGP_AJ_T0005554.1 MGP_AJ_G0004687.1 mouse_genomes_project 9 117106230 117143357 - Gm2415 antisense antisense MGP_AJ_T0005555.1 MGP_AJ_G0004687.1 mouse_genomes_project 9 117106313 117143367 - Gm2415 antisense antisense MGP_AJ_T0005556.1 MGP_AJ_G0004687.1 mouse_genomes_project 9 117119571 117143356 - Gm2415 antisense antisense MGP_AJ_T0005557.1 MGP_AJ_G0004687.1 mouse_genomes_project 9 117141410 117143553 - Gm2415 antisense antisense MGP_AJ_T0002386.1 MGP_AJ_G0002296.1 mouse_genomes_project 9 71519665 71522737 - TEC TEC MGP_AJ_T0018538.1 MGP_AJ_G0015719.1 mouse_genomes_project 9 61596617 61602798 + Scarletltr processed_transcript processed_transcript MGP_AJ_T0100301.1 MGP_AJ_G0038267.1 mouse_genomes_project 9 92417973 92418069 + Gm24178 snRNA snRNA MGP_AJ_T0092718.1 MGP_AJ_G0034878.1 mouse_genomes_project 9 56716536 56742034 + MGP_AJ_P0092718 Adpgk protein_coding protein_coding MGP_AJ_T0016152.1 MGP_AJ_G0014247.1 mouse_genomes_project 9 96100766 96101343 + processed_pseudogene processed_pseudogene MGP_AJ_T0095453.1 MGP_AJ_G0035459.1 mouse_genomes_project 9 121737242 121799052 + MGP_AJ_P0095453 Sacm1l protein_coding protein_coding MGP_AJ_T0005428.1 MGP_AJ_G0004598.1 mouse_genomes_project 9 37925840 37926859 - Gm16095 antisense antisense MGP_AJ_T0016141.1 MGP_AJ_G0014236.1 mouse_genomes_project 9 93178568 93179726 - processed_pseudogene processed_pseudogene MGP_AJ_T0091369.1 MGP_AJ_G0034371.1 mouse_genomes_project 9 16285515 16286454 - MGP_AJ_P0091369 Olfr847 protein_coding protein_coding MGP_AJ_T0018551.1 MGP_AJ_G0015724.1 mouse_genomes_project 9 77590325 77599918 + 4930429F24Rik processed_transcript processed_transcript MGP_AJ_T0093906.1 MGP_AJ_G0035154.1 mouse_genomes_project 9 97446278 97454678 + MGP_AJ_P0093906 Dzip1l protein_coding protein_coding MGP_AJ_T0093907.1 MGP_AJ_G0035154.1 mouse_genomes_project 9 97446324 97486723 + MGP_AJ_P0093907 Dzip1l protein_coding protein_coding MGP_AJ_T0093908.1 MGP_AJ_G0035154.1 mouse_genomes_project 9 97446360 97486723 + MGP_AJ_P0093908 Dzip1l protein_coding protein_coding MGP_AJ_T0093909.1 MGP_AJ_G0035154.1 mouse_genomes_project 9 97446625 97486723 + MGP_AJ_P0093909 Dzip1l protein_coding protein_coding MGP_AJ_T0093910.1 MGP_AJ_G0035154.1 mouse_genomes_project 9 97451742 97486630 + MGP_AJ_P0093910 Dzip1l protein_coding protein_coding MGP_AJ_T0093911.1 MGP_AJ_G0035154.1 mouse_genomes_project 9 97461515 97468416 + Dzip1l protein_coding processed_transcript MGP_AJ_T0093912.1 MGP_AJ_G0035154.1 mouse_genomes_project 9 97467695 97471165 + Dzip1l protein_coding retained_intron MGP_AJ_T0100283.1 MGP_AJ_G0038249.1 mouse_genomes_project 9 68147506 68147605 + Gm23588 snRNA snRNA MGP_AJ_T0005451.1 MGP_AJ_G0004613.1 mouse_genomes_project 9 54456567 54488329 - Man2c1os antisense antisense MGP_AJ_T0005452.1 MGP_AJ_G0004613.1 mouse_genomes_project 9 54485141 54487937 - Man2c1os antisense antisense MGP_AJ_T0005453.1 MGP_AJ_G0004613.1 mouse_genomes_project 9 54487014 54488283 - Man2c1os antisense antisense MGP_AJ_T0091679.1 MGP_AJ_G0034497.1 mouse_genomes_project 9 28356539 28391055 + MGP_AJ_P0091679 Nfrkb protein_coding protein_coding MGP_AJ_T0091680.1 MGP_AJ_G0034497.1 mouse_genomes_project 9 28356544 28391055 + MGP_AJ_P0091680 Nfrkb protein_coding nonsense_mediated_decay MGP_AJ_T0091681.1 MGP_AJ_G0034497.1 mouse_genomes_project 9 28356551 28365158 + MGP_AJ_P0091681 Nfrkb protein_coding nonsense_mediated_decay MGP_AJ_T0091682.1 MGP_AJ_G0034497.1 mouse_genomes_project 9 28356553 28391064 + MGP_AJ_P0091682 Nfrkb protein_coding unknown_likely_coding MGP_AJ_T0091683.1 MGP_AJ_G0034497.1 mouse_genomes_project 9 28356560 28391055 + MGP_AJ_P0091683 Nfrkb protein_coding nonsense_mediated_decay MGP_AJ_T0091684.1 MGP_AJ_G0034497.1 mouse_genomes_project 9 28363200 28369611 + Nfrkb protein_coding retained_intron MGP_AJ_T0091685.1 MGP_AJ_G0034497.1 mouse_genomes_project 9 28367644 28369583 + Nfrkb protein_coding retained_intron MGP_AJ_T0091686.1 MGP_AJ_G0034497.1 mouse_genomes_project 9 28369631 28391055 + Nfrkb protein_coding retained_intron MGP_AJ_T0091687.1 MGP_AJ_G0034497.1 mouse_genomes_project 9 28379188 28380234 + Nfrkb protein_coding retained_intron MGP_AJ_T0016073.1 MGP_AJ_G0014168.1 mouse_genomes_project 9 57239272 57239770 - processed_pseudogene processed_pseudogene MGP_AJ_T0091885.1 MGP_AJ_G0034569.1 mouse_genomes_project 9 35356962 35357913 + MGP_AJ_P0091885 Olfr895 protein_coding protein_coding MGP_AJ_T0092039.1 MGP_AJ_G0034665.1 mouse_genomes_project 9 40582425 40607731 + MGP_AJ_P0092039 Trim29 protein_coding protein_coding MGP_AJ_T0092461.1 MGP_AJ_G0034798.1 mouse_genomes_project 9 51222450 51226044 + MGP_AJ_P0092461 Sln protein_coding protein_coding MGP_AJ_T0011033.1 MGP_AJ_G0009155.1 mouse_genomes_project 9 5233458 5233554 + Mir1899 miRNA miRNA MGP_AJ_T0092833.1 MGP_AJ_G0034905.1 mouse_genomes_project 9 60366244 60377257 + MGP_AJ_P0092833 Calml4 protein_coding protein_coding MGP_AJ_T0092834.1 MGP_AJ_G0034905.1 mouse_genomes_project 9 60366244 60377257 + MGP_AJ_P0092834 Calml4 protein_coding protein_coding MGP_AJ_T0016150.1 MGP_AJ_G0014245.1 mouse_genomes_project 9 95018025 95019862 - processed_pseudogene processed_pseudogene MGP_AJ_T0095463.1 MGP_AJ_G0035462.1 mouse_genomes_project 9 121887180 121988353 + MGP_AJ_P0095463 Ccr9 protein_coding protein_coding MGP_AJ_T0095471.1 MGP_AJ_G0035462.1 mouse_genomes_project 9 121973074 121988351 + MGP_AJ_P0095471 Ccr9 protein_coding protein_coding MGP_AJ_T0095472.1 MGP_AJ_G0035462.1 mouse_genomes_project 9 121973090 121987914 + MGP_AJ_P0095472 Ccr9 protein_coding protein_coding MGP_AJ_T0095473.1 MGP_AJ_G0035462.1 mouse_genomes_project 9 121973092 121988359 + MGP_AJ_P0095473 Ccr9 protein_coding protein_coding MGP_AJ_T0095474.1 MGP_AJ_G0035462.1 mouse_genomes_project 9 121980881 121989845 + MGP_AJ_P0095474 Ccr9 protein_coding protein_coding MGP_AJ_T0093036.1 MGP_AJ_G0034963.1 mouse_genomes_project 9 64513132 64516544 + MGP_AJ_P0093036 Rps27l protein_coding protein_coding MGP_AJ_T0093037.1 MGP_AJ_G0034963.1 mouse_genomes_project 9 64513137 64516546 + MGP_AJ_P0093037 Rps27l protein_coding protein_coding MGP_AJ_T0093038.1 MGP_AJ_G0034963.1 mouse_genomes_project 9 64513212 64516500 + MGP_AJ_P0093038 Rps27l protein_coding nonsense_mediated_decay MGP_AJ_T0093039.1 MGP_AJ_G0034963.1 mouse_genomes_project 9 64513401 64516548 + Rps27l protein_coding processed_transcript MGP_AJ_T0093040.1 MGP_AJ_G0034963.1 mouse_genomes_project 9 64514688 64516500 + MGP_AJ_P0093040 Rps27l protein_coding protein_coding MGP_AJ_T0093041.1 MGP_AJ_G0034963.1 mouse_genomes_project 9 64515595 64516543 + Rps27l protein_coding retained_intron MGP_AJ_T0016102.1 MGP_AJ_G0014197.1 mouse_genomes_project 9 74800551 74802753 + processed_pseudogene processed_pseudogene MGP_AJ_T0011050.1 MGP_AJ_G0009172.1 mouse_genomes_project 9 36227375 36227596 + miRNA miRNA MGP_AJ_T0093969.1 MGP_AJ_G0035167.1 mouse_genomes_project 9 100412930 100414955 - Cep63 protein_coding TEC MGP_AJ_T0093970.1 MGP_AJ_G0035167.1 mouse_genomes_project 9 100414926 100455752 - MGP_AJ_P0093970 Cep63 protein_coding protein_coding MGP_AJ_T0093971.1 MGP_AJ_G0035167.1 mouse_genomes_project 9 100414939 100456162 - MGP_AJ_P0093971 Cep63 protein_coding protein_coding MGP_AJ_T0093972.1 MGP_AJ_G0035167.1 mouse_genomes_project 9 100415035 100415518 - Cep63 protein_coding retained_intron MGP_AJ_T0093973.1 MGP_AJ_G0035167.1 mouse_genomes_project 9 100418752 100451342 - Cep63 protein_coding retained_intron MGP_AJ_T0093974.1 MGP_AJ_G0035167.1 mouse_genomes_project 9 100426580 100431111 - Cep63 protein_coding retained_intron MGP_AJ_T0093975.1 MGP_AJ_G0035167.1 mouse_genomes_project 9 100444690 100455651 - MGP_AJ_P0093975 Cep63 protein_coding nonsense_mediated_decay MGP_AJ_T0093976.1 MGP_AJ_G0035167.1 mouse_genomes_project 9 100448197 100456137 - MGP_AJ_P0093976 Cep63 protein_coding protein_coding MGP_AJ_T0093977.1 MGP_AJ_G0035167.1 mouse_genomes_project 9 100448247 100456137 - MGP_AJ_P0093977 Cep63 protein_coding protein_coding MGP_AJ_T0091387.1 MGP_AJ_G0034389.1 mouse_genomes_project 9 17057386 17058383 - MGP_AJ_P0091387 protein_coding protein_coding MGP_AJ_T0094613.1 MGP_AJ_G0035273.1 mouse_genomes_project 9 106258631 106303227 + MGP_AJ_P0094613 Usp4 protein_coding protein_coding MGP_AJ_T0094614.1 MGP_AJ_G0035273.1 mouse_genomes_project 9 106258652 106296586 + MGP_AJ_P0094614 Usp4 protein_coding nonsense_mediated_decay MGP_AJ_T0094615.1 MGP_AJ_G0035273.1 mouse_genomes_project 9 106258675 106268587 + Usp4 protein_coding retained_intron MGP_AJ_T0094616.1 MGP_AJ_G0035273.1 mouse_genomes_project 9 106258691 106303202 + MGP_AJ_P0094616 Usp4 protein_coding protein_coding MGP_AJ_T0094617.1 MGP_AJ_G0035273.1 mouse_genomes_project 9 106267228 106268702 + Usp4 protein_coding processed_transcript MGP_AJ_T0094618.1 MGP_AJ_G0035273.1 mouse_genomes_project 9 106270497 106273516 + Usp4 protein_coding retained_intron MGP_AJ_T0094619.1 MGP_AJ_G0035273.1 mouse_genomes_project 9 106278574 106280892 + Usp4 protein_coding retained_intron MGP_AJ_T0094620.1 MGP_AJ_G0035273.1 mouse_genomes_project 9 106283342 106302941 + MGP_AJ_P0094620 Usp4 protein_coding protein_coding MGP_AJ_T0094621.1 MGP_AJ_G0035273.1 mouse_genomes_project 9 106292094 106302474 + MGP_AJ_P0094621 Usp4 protein_coding protein_coding MGP_AJ_T0094622.1 MGP_AJ_G0035273.1 mouse_genomes_project 9 106301557 106302927 + Usp4 protein_coding retained_intron MGP_AJ_T0095292.1 MGP_AJ_G0035404.1 mouse_genomes_project 9 117980046 118051722 - MGP_AJ_P0095292 Scn11a protein_coding protein_coding MGP_AJ_T0092413.1 MGP_AJ_G0034779.1 mouse_genomes_project 9 48610717 48636946 + MGP_AJ_P0092413 Pou2af1 protein_coding protein_coding MGP_AJ_T0009314.1 MGP_AJ_G0007481.1 mouse_genomes_project 9 94304795 94311158 - lincRNA lincRNA MGP_AJ_T0016122.1 MGP_AJ_G0014217.1 mouse_genomes_project 9 85875932 85881103 - processed_pseudogene processed_pseudogene MGP_AJ_T0091188.1 MGP_AJ_G0034303.1 mouse_genomes_project 9 4538817 4549246 + MGP_AJ_P0091188 Mmp27 protein_coding protein_coding MGP_AJ_T0091189.1 MGP_AJ_G0034303.1 mouse_genomes_project 9 4538879 4549241 + MGP_AJ_P0091189 Mmp27 protein_coding protein_coding MGP_AJ_T0091190.1 MGP_AJ_G0034303.1 mouse_genomes_project 9 4538884 4549716 + MGP_AJ_P0091190 Mmp27 protein_coding protein_coding MGP_AJ_T0002414.1 MGP_AJ_G0002323.1 mouse_genomes_project 9 89184991 89185871 - TEC TEC MGP_AJ_T0016159.1 MGP_AJ_G0014254.1 mouse_genomes_project 9 99124633 99125039 - processed_pseudogene processed_pseudogene MGP_AJ_T0092693.1 MGP_AJ_G0034871.1 mouse_genomes_project 9 55776567 55787215 - MGP_AJ_P0092693 Tbc1d21 protein_coding protein_coding MGP_AJ_T0092499.1 MGP_AJ_G0034814.1 mouse_genomes_project 9 52289357 52290116 - MGP_AJ_P0092499 AY074887 protein_coding protein_coding MGP_AJ_T0091196.1 MGP_AJ_G0034307.1 mouse_genomes_project 9 4790929 4816024 - MGP_AJ_P0091196 Birc2 protein_coding protein_coding MGP_AJ_T0091197.1 MGP_AJ_G0034307.1 mouse_genomes_project 9 4790938 4814134 - MGP_AJ_P0091197 Birc2 protein_coding protein_coding MGP_AJ_T0091198.1 MGP_AJ_G0034307.1 mouse_genomes_project 9 4813662 4815772 - Birc2 protein_coding processed_transcript MGP_AJ_T0091199.1 MGP_AJ_G0034307.1 mouse_genomes_project 9 4814626 4816030 - Birc2 protein_coding retained_intron MGP_AJ_T0091200.1 MGP_AJ_G0034307.1 mouse_genomes_project 9 4815653 4816031 - MGP_AJ_P0091200 Birc2 protein_coding protein_coding MGP_AJ_T0095035.1 MGP_AJ_G0035338.1 mouse_genomes_project 9 108877717 108881759 + MGP_AJ_P0095035 Prss44 protein_coding protein_coding MGP_AJ_T0095036.1 MGP_AJ_G0035338.1 mouse_genomes_project 9 108877750 108888252 + MGP_AJ_P0095036 Prss44 protein_coding nonsense_mediated_decay MGP_AJ_T0095037.1 MGP_AJ_G0035338.1 mouse_genomes_project 9 108878209 108880288 + MGP_AJ_P0095037 Prss44 protein_coding protein_coding MGP_AJ_T0095038.1 MGP_AJ_G0035338.1 mouse_genomes_project 9 108878975 108880708 + Prss44 protein_coding retained_intron MGP_AJ_T0091636.1 MGP_AJ_G0034483.1 mouse_genomes_project 9 23922728 23949341 - MGP_AJ_P0091636 Vps26b protein_coding protein_coding MGP_AJ_T0098754.1 MGP_AJ_G0036738.1 mouse_genomes_project 9 63388095 63388208 + n-R5s85 rRNA rRNA MGP_AJ_T0011752.1 MGP_AJ_G0009874.1 mouse_genomes_project 9 119447294 119447540 + Gm22987 misc_RNA misc_RNA MGP_AJ_T0005437.1 MGP_AJ_G0004605.1 mouse_genomes_project 9 43588625 43589534 - Gm10680 antisense antisense MGP_AJ_T0092037.1 MGP_AJ_G0034664.1 mouse_genomes_project 9 40532114 40553862 + MGP_AJ_P0092037 protein_coding protein_coding MGP_AJ_T0092038.1 MGP_AJ_G0034664.1 mouse_genomes_project 9 40532151 40553860 + MGP_AJ_P0092038 protein_coding unknown_likely_coding MGP_AJ_T0091959.1 MGP_AJ_G0034631.1 mouse_genomes_project 9 37104056 37104980 + MGP_AJ_P0091959 Olfr229 protein_coding protein_coding MGP_AJ_T0091373.1 MGP_AJ_G0034375.1 mouse_genomes_project 9 16436943 16437861 - MGP_AJ_P0091373 Olfr853 protein_coding protein_coding MGP_AJ_T0093395.1 MGP_AJ_G0035039.1 mouse_genomes_project 9 75835449 75894492 + MGP_AJ_P0093395 Ick protein_coding protein_coding MGP_AJ_T0093396.1 MGP_AJ_G0035039.1 mouse_genomes_project 9 75835492 75839685 + MGP_AJ_P0093396 Ick protein_coding protein_coding MGP_AJ_T0093397.1 MGP_AJ_G0035039.1 mouse_genomes_project 9 75839098 75844726 + Ick protein_coding processed_transcript MGP_AJ_T0093398.1 MGP_AJ_G0035039.1 mouse_genomes_project 9 75839496 75860376 + Ick protein_coding retained_intron MGP_AJ_T0093399.1 MGP_AJ_G0035039.1 mouse_genomes_project 9 75839539 75851913 + MGP_AJ_P0093399 Ick protein_coding protein_coding MGP_AJ_T0093400.1 MGP_AJ_G0035039.1 mouse_genomes_project 9 75839555 75891966 + MGP_AJ_P0093400 Ick protein_coding protein_coding MGP_AJ_T0093401.1 MGP_AJ_G0035039.1 mouse_genomes_project 9 75839570 75898671 + MGP_AJ_P0093401 Ick protein_coding protein_coding MGP_AJ_T0093402.1 MGP_AJ_G0035039.1 mouse_genomes_project 9 75882041 75897017 + Ick protein_coding retained_intron MGP_AJ_T0002472.1 MGP_AJ_G0002381.1 mouse_genomes_project 9 109486416 109487896 + TEC TEC MGP_AJ_T0016057.1 MGP_AJ_G0014152.1 mouse_genomes_project 9 32520114 32520403 - processed_pseudogene processed_pseudogene MGP_AJ_T0093033.1 MGP_AJ_G0034961.1 mouse_genomes_project 9 64375281 64398861 - MGP_AJ_P0093033 Aph1c protein_coding protein_coding MGP_AJ_T0093034.1 MGP_AJ_G0034961.1 mouse_genomes_project 9 64384277 64398783 - MGP_AJ_P0093034 Aph1c protein_coding protein_coding MGP_AJ_T0094061.1 MGP_AJ_G0035185.1 mouse_genomes_project 9 101914255 101916203 + Acad11 protein_coding retained_intron MGP_AJ_T0094062.1 MGP_AJ_G0035185.1 mouse_genomes_project 9 101914294 101980329 + MGP_AJ_P0094062 Acad11 protein_coding protein_coding MGP_AJ_T0094064.1 MGP_AJ_G0035185.1 mouse_genomes_project 9 101943724 101966148 + Acad11 protein_coding processed_transcript MGP_AJ_T0094065.1 MGP_AJ_G0035185.1 mouse_genomes_project 9 101948168 101960664 + MGP_AJ_P0094065 Acad11 protein_coding protein_coding MGP_AJ_T0094068.1 MGP_AJ_G0035185.1 mouse_genomes_project 9 101963021 101966486 + Acad11 protein_coding retained_intron MGP_AJ_T0094069.1 MGP_AJ_G0035185.1 mouse_genomes_project 9 101976516 101979694 + Acad11 protein_coding processed_transcript MGP_AJ_T0092924.1 MGP_AJ_G0034932.1 mouse_genomes_project 9 62800657 62816079 + MGP_AJ_P0092924 protein_coding protein_coding MGP_AJ_T0092925.1 MGP_AJ_G0034932.1 mouse_genomes_project 9 62801301 62816009 + MGP_AJ_P0092925 protein_coding nonsense_mediated_decay MGP_AJ_T0016097.1 MGP_AJ_G0014192.1 mouse_genomes_project 9 74357823 74358199 + processed_pseudogene processed_pseudogene MGP_AJ_T0100248.1 MGP_AJ_G0038214.1 mouse_genomes_project 9 3629933 3630038 - Gm23097 snRNA snRNA MGP_AJ_T0091367.1 MGP_AJ_G0034369.1 mouse_genomes_project 9 16253193 16254135 + MGP_AJ_P0091367 Olfr845 protein_coding protein_coding MGP_AJ_T0093339.1 MGP_AJ_G0035026.1 mouse_genomes_project 9 73456287 73584547 + MGP_AJ_P0093339 Bmp5 protein_coding protein_coding MGP_AJ_T0093340.1 MGP_AJ_G0035026.1 mouse_genomes_project 9 73512019 73527805 + Bmp5 protein_coding processed_transcript MGP_AJ_T0011078.1 MGP_AJ_G0009200.1 mouse_genomes_project 9 68433932 68434014 - Gm25149 miRNA miRNA MGP_AJ_T0102083.1 MGP_AJ_G0035382.1 mouse_genomes_project 9 116082945 116217239 - transcribed_unprocessed_pseudogene processed_transcript MGP_AJ_T0102084.1 MGP_AJ_G0035382.1 mouse_genomes_project 9 116119308 116217401 - transcribed_unprocessed_pseudogene processed_transcript MGP_AJ_T0102085.1 MGP_AJ_G0035382.1 mouse_genomes_project 9 116169291 116217401 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_AJ_T0102086.1 MGP_AJ_G0035382.1 mouse_genomes_project 9 116216061 116245438 - transcribed_unprocessed_pseudogene processed_transcript MGP_AJ_T0016187.1 MGP_AJ_G0014282.1 mouse_genomes_project 9 121968366 121968640 + processed_pseudogene processed_pseudogene MGP_AJ_T0091880.1 MGP_AJ_G0034564.1 mouse_genomes_project 9 35233390 35234335 + MGP_AJ_P0091880 Olfr890 protein_coding protein_coding MGP_AJ_T0005475.1 MGP_AJ_G0004628.1 mouse_genomes_project 9 70256213 70257041 - Gm27232 antisense antisense MGP_AJ_T0091460.1 MGP_AJ_G0034414.1 mouse_genomes_project 9 17908400 17909559 + MGP_AJ_P0091460 Icam4 protein_coding protein_coding MGP_AJ_T0099112.1 MGP_AJ_G0037083.1 mouse_genomes_project 9 106299763 106300887 + Gm37963 sense_intronic sense_intronic MGP_AJ_T0095483.1 MGP_AJ_G0035469.1 mouse_genomes_project 9 122223043 122232762 + MGP_AJ_P0095483 Ccr3 protein_coding protein_coding MGP_AJ_T0093119.1 MGP_AJ_G0034978.1 mouse_genomes_project 9 67708679 67761001 - MGP_AJ_P0093119 Fam81a protein_coding protein_coding MGP_AJ_T0093120.1 MGP_AJ_G0034978.1 mouse_genomes_project 9 67721773 67722300 - Fam81a protein_coding retained_intron MGP_AJ_T0093121.1 MGP_AJ_G0034978.1 mouse_genomes_project 9 67744058 67761226 - MGP_AJ_P0093121 Fam81a protein_coding protein_coding MGP_AJ_T0093122.1 MGP_AJ_G0034978.1 mouse_genomes_project 9 67744089 67761931 - MGP_AJ_P0093122 Fam81a protein_coding protein_coding MGP_AJ_T0005459.1 MGP_AJ_G0004617.1 mouse_genomes_project 9 57434627 57442349 + Gm7616 antisense antisense MGP_AJ_T0009223.1 MGP_AJ_G0007410.1 mouse_genomes_project 9 29793499 29813855 + Gm3331 lincRNA lincRNA MGP_AJ_T0094276.1 MGP_AJ_G0035224.1 mouse_genomes_project 9 104738593 104793172 - MGP_AJ_P0094276 Manf protein_coding protein_coding MGP_AJ_T0094278.1 MGP_AJ_G0035224.1 mouse_genomes_project 9 104771390 104791584 - MGP_AJ_P0094278 Manf protein_coding protein_coding MGP_AJ_T0094282.1 MGP_AJ_G0035224.1 mouse_genomes_project 9 104788716 104793279 - MGP_AJ_P0094282 Manf protein_coding protein_coding MGP_AJ_T0094283.1 MGP_AJ_G0035224.1 mouse_genomes_project 9 104790054 104792715 - MGP_AJ_P0094283 Manf protein_coding protein_coding MGP_AJ_T0094284.1 MGP_AJ_G0035224.1 mouse_genomes_project 9 104790385 104793170 - MGP_AJ_P0094284 Manf protein_coding protein_coding MGP_AJ_T0094285.1 MGP_AJ_G0035224.1 mouse_genomes_project 9 104791331 104793215 - Manf protein_coding retained_intron MGP_AJ_T0094286.1 MGP_AJ_G0035224.1 mouse_genomes_project 9 104791863 104793217 - Manf protein_coding retained_intron MGP_AJ_T0002355.1 MGP_AJ_G0002265.1 mouse_genomes_project 9 31492769 31493679 + TEC TEC MGP_AJ_T0095481.1 MGP_AJ_G0035467.1 mouse_genomes_project 9 122172971 122179655 - MGP_AJ_P0095481 Ccr1 protein_coding protein_coding MGP_AJ_T0016051.1 MGP_AJ_G0014146.1 mouse_genomes_project 9 28060089 28060882 + processed_pseudogene processed_pseudogene MGP_AJ_T0009226.1 MGP_AJ_G0007413.1 mouse_genomes_project 9 30940667 30957226 + lincRNA lincRNA MGP_AJ_T0095423.1 MGP_AJ_G0035448.1 mouse_genomes_project 9 121136100 121142036 - MGP_AJ_P0095423 1110059G10Rik protein_coding protein_coding MGP_AJ_T0095424.1 MGP_AJ_G0035448.1 mouse_genomes_project 9 121138546 121141989 - MGP_AJ_P0095424 1110059G10Rik protein_coding protein_coding MGP_AJ_T0092605.1 MGP_AJ_G0034841.1 mouse_genomes_project 9 54500462 54505798 - MGP_AJ_P0092605 Neil1 protein_coding protein_coding MGP_AJ_T0092606.1 MGP_AJ_G0034841.1 mouse_genomes_project 9 54500732 54505976 - MGP_AJ_P0092606 Neil1 protein_coding protein_coding MGP_AJ_T0092607.1 MGP_AJ_G0034841.1 mouse_genomes_project 9 54500918 54504705 - MGP_AJ_P0092607 Neil1 protein_coding protein_coding MGP_AJ_T0016060.1 MGP_AJ_G0014155.1 mouse_genomes_project 9 33567281 33567673 + processed_pseudogene processed_pseudogene MGP_AJ_T0094357.1 MGP_AJ_G0035237.1 mouse_genomes_project 9 105460204 105463065 + MGP_AJ_P0094357 Tusc2 protein_coding protein_coding MGP_AJ_T0094358.1 MGP_AJ_G0035237.1 mouse_genomes_project 9 105460303 105460901 + Tusc2 protein_coding processed_transcript MGP_AJ_T0094359.1 MGP_AJ_G0035237.1 mouse_genomes_project 9 105460322 105461948 + MGP_AJ_P0094359 Tusc2 protein_coding protein_coding MGP_AJ_T0016177.1 MGP_AJ_G0014272.1 mouse_genomes_project 9 107975100 107975500 - processed_pseudogene processed_pseudogene MGP_AJ_T0091455.1 MGP_AJ_G0034409.1 mouse_genomes_project 9 17768947 17773214 - MGP_AJ_P0091455 Eif3g protein_coding protein_coding MGP_AJ_T0016071.1 MGP_AJ_G0014166.1 mouse_genomes_project 9 56560445 56561680 - processed_pseudogene processed_pseudogene MGP_AJ_T0092209.1 MGP_AJ_G0034720.1 mouse_genomes_project 9 42764820 43095246 + MGP_AJ_P0092209 Dscaml1 protein_coding protein_coding MGP_AJ_T0002374.1 MGP_AJ_G0002284.1 mouse_genomes_project 9 70074968 70078200 + TEC TEC MGP_AJ_T0018513.1 MGP_AJ_G0015713.1 mouse_genomes_project 9 38624732 38845616 + processed_transcript lincRNA MGP_AJ_T0018514.1 MGP_AJ_G0015713.1 mouse_genomes_project 9 38624861 38738333 + processed_transcript lincRNA MGP_AJ_T0018515.1 MGP_AJ_G0015713.1 mouse_genomes_project 9 38624896 38682287 + processed_transcript lincRNA MGP_AJ_T0018516.1 MGP_AJ_G0015713.1 mouse_genomes_project 9 38724774 38846073 + processed_transcript lincRNA MGP_AJ_T0018517.1 MGP_AJ_G0015713.1 mouse_genomes_project 9 38724882 38871367 + processed_transcript lincRNA MGP_AJ_T0018518.1 MGP_AJ_G0015713.1 mouse_genomes_project 9 38835046 38848425 + processed_transcript lincRNA MGP_AJ_T0018519.1 MGP_AJ_G0015713.1 mouse_genomes_project 9 38835527 38848428 + processed_transcript lincRNA MGP_AJ_T0018520.1 MGP_AJ_G0015713.1 mouse_genomes_project 9 38836394 38848426 + processed_transcript processed_transcript MGP_AJ_T0018521.1 MGP_AJ_G0015713.1 mouse_genomes_project 9 38836984 38868947 + processed_transcript lincRNA MGP_AJ_T0018522.1 MGP_AJ_G0015713.1 mouse_genomes_project 9 38836998 38871171 + processed_transcript lincRNA MGP_AJ_T0018523.1 MGP_AJ_G0015713.1 mouse_genomes_project 9 38837070 38848085 + processed_transcript lincRNA MGP_AJ_T0018524.1 MGP_AJ_G0015713.1 mouse_genomes_project 9 38844092 38848336 + processed_transcript retained_intron MGP_AJ_T0018525.1 MGP_AJ_G0015713.1 mouse_genomes_project 9 38856391 38868913 + processed_transcript lincRNA MGP_AJ_T0018526.1 MGP_AJ_G0015713.1 mouse_genomes_project 9 38870418 38873952 + processed_transcript retained_intron MGP_AJ_T0091962.1 MGP_AJ_G0034634.1 mouse_genomes_project 9 37147597 37150996 - MGP_AJ_P0091962 Olfr976 protein_coding protein_coding MGP_AJ_T0009255.1 MGP_AJ_G0007437.1 mouse_genomes_project 9 55873190 55887615 + 4930461G14Rik lincRNA lincRNA MGP_AJ_T0093042.1 MGP_AJ_G0034964.1 mouse_genomes_project 9 64521487 64542293 - MGP_AJ_P0093042 Lactb protein_coding protein_coding MGP_AJ_T0091534.1 MGP_AJ_G0034439.1 mouse_genomes_project 9 18657667 18662646 - MGP_AJ_P0091534 Spc24 protein_coding protein_coding MGP_AJ_T0091920.1 MGP_AJ_G0034598.1 mouse_genomes_project 9 36082571 36083607 + MGP_AJ_P0091920 protein_coding protein_coding MGP_AJ_T0009346.1 MGP_AJ_G0007507.1 mouse_genomes_project 9 109618421 109623339 - Gm42523 lincRNA lincRNA MGP_AJ_T0091870.1 MGP_AJ_G0034555.1 mouse_genomes_project 9 34975703 34976754 + MGP_AJ_P0091870 Olfr145 protein_coding protein_coding MGP_AJ_T0091663.1 MGP_AJ_G0034490.1 mouse_genomes_project 9 27375231 27415474 + MGP_AJ_P0091663 Snx19 protein_coding protein_coding MGP_AJ_T0005511.1 MGP_AJ_G0004651.1 mouse_genomes_project 9 96390273 96391529 + Gm37637 antisense antisense MGP_AJ_T0095049.1 MGP_AJ_G0035344.1 mouse_genomes_project 9 108943919 108946772 + Als2cl protein_coding processed_transcript MGP_AJ_T0095050.1 MGP_AJ_G0035344.1 mouse_genomes_project 9 108944223 108964582 + MGP_AJ_P0095050 Als2cl protein_coding protein_coding MGP_AJ_T0095051.1 MGP_AJ_G0035344.1 mouse_genomes_project 9 108944255 108964588 + MGP_AJ_P0095051 Als2cl protein_coding protein_coding MGP_AJ_T0095052.1 MGP_AJ_G0035344.1 mouse_genomes_project 9 108944282 108948943 + MGP_AJ_P0095052 Als2cl protein_coding protein_coding MGP_AJ_T0095053.1 MGP_AJ_G0035344.1 mouse_genomes_project 9 108944386 108964585 + MGP_AJ_P0095053 Als2cl protein_coding protein_coding MGP_AJ_T0095054.1 MGP_AJ_G0035344.1 mouse_genomes_project 9 108949810 108951371 + Als2cl protein_coding retained_intron MGP_AJ_T0095055.1 MGP_AJ_G0035344.1 mouse_genomes_project 9 108950351 108954197 + Als2cl protein_coding retained_intron MGP_AJ_T0095056.1 MGP_AJ_G0035344.1 mouse_genomes_project 9 108952039 108964586 + Als2cl protein_coding processed_transcript MGP_AJ_T0092418.1 MGP_AJ_G0034783.1 mouse_genomes_project 9 49148400 49172958 + Arhgap20 protein_coding retained_intron MGP_AJ_T0092419.1 MGP_AJ_G0034783.1 mouse_genomes_project 9 49148408 49212627 + Arhgap20 protein_coding retained_intron MGP_AJ_T0092420.1 MGP_AJ_G0034783.1 mouse_genomes_project 9 49148415 49240764 + MGP_AJ_P0092420 Arhgap20 protein_coding protein_coding MGP_AJ_T0092421.1 MGP_AJ_G0034783.1 mouse_genomes_project 9 49148639 49240773 + MGP_AJ_P0092421 Arhgap20 protein_coding protein_coding MGP_AJ_T0092422.1 MGP_AJ_G0034783.1 mouse_genomes_project 9 49202892 49216341 + Arhgap20 protein_coding processed_transcript MGP_AJ_T0092423.1 MGP_AJ_G0034783.1 mouse_genomes_project 9 49218715 49235557 + Arhgap20 protein_coding processed_transcript MGP_AJ_T0100288.1 MGP_AJ_G0038254.1 mouse_genomes_project 9 70272205 70272312 + Gm23057 snRNA snRNA MGP_AJ_T0091754.1 MGP_AJ_G0034513.1 mouse_genomes_project 9 32359502 32394206 + MGP_AJ_P0091754 Cdon protein_coding protein_coding MGP_AJ_T0091755.1 MGP_AJ_G0034513.1 mouse_genomes_project 9 32359928 32394181 + MGP_AJ_P0091755 Cdon protein_coding nonsense_mediated_decay MGP_AJ_T0091756.1 MGP_AJ_G0034513.1 mouse_genomes_project 9 32359971 32452701 + MGP_AJ_P0091756 Cdon protein_coding protein_coding MGP_AJ_T0091757.1 MGP_AJ_G0034513.1 mouse_genomes_project 9 32361969 32412694 + MGP_AJ_P0091757 Cdon protein_coding protein_coding MGP_AJ_T0091758.1 MGP_AJ_G0034513.1 mouse_genomes_project 9 32390915 32452700 + MGP_AJ_P0091758 Cdon protein_coding protein_coding MGP_AJ_T0091759.1 MGP_AJ_G0034513.1 mouse_genomes_project 9 32396284 32411623 + MGP_AJ_P0091759 Cdon protein_coding protein_coding MGP_AJ_T0091497.1 MGP_AJ_G0034431.1 mouse_genomes_project 9 18316961 18402858 + MGP_AJ_P0091497 Dnm2 protein_coding protein_coding MGP_AJ_T0091498.1 MGP_AJ_G0034431.1 mouse_genomes_project 9 18316985 18402242 + MGP_AJ_P0091498 Dnm2 protein_coding protein_coding MGP_AJ_T0091499.1 MGP_AJ_G0034431.1 mouse_genomes_project 9 18316998 18402244 + MGP_AJ_P0091499 Dnm2 protein_coding protein_coding MGP_AJ_T0091500.1 MGP_AJ_G0034431.1 mouse_genomes_project 9 18317021 18362267 + MGP_AJ_P0091500 Dnm2 protein_coding nonsense_mediated_decay MGP_AJ_T0091501.1 MGP_AJ_G0034431.1 mouse_genomes_project 9 18317024 18402230 + MGP_AJ_P0091501 Dnm2 protein_coding protein_coding MGP_AJ_T0091502.1 MGP_AJ_G0034431.1 mouse_genomes_project 9 18317029 18402228 + MGP_AJ_P0091502 Dnm2 protein_coding protein_coding MGP_AJ_T0091503.1 MGP_AJ_G0034431.1 mouse_genomes_project 9 18317149 18401506 + MGP_AJ_P0091503 Dnm2 protein_coding protein_coding MGP_AJ_T0091504.1 MGP_AJ_G0034431.1 mouse_genomes_project 9 18317149 18386010 + MGP_AJ_P0091504 Dnm2 protein_coding unknown_likely_coding MGP_AJ_T0091505.1 MGP_AJ_G0034431.1 mouse_genomes_project 9 18317296 18387561 + Dnm2 protein_coding processed_transcript MGP_AJ_T0091506.1 MGP_AJ_G0034431.1 mouse_genomes_project 9 18317297 18402858 + MGP_AJ_P0091506 Dnm2 protein_coding protein_coding MGP_AJ_T0091507.1 MGP_AJ_G0034431.1 mouse_genomes_project 9 18351385 18351849 + Dnm2 protein_coding processed_transcript MGP_AJ_T0091508.1 MGP_AJ_G0034431.1 mouse_genomes_project 9 18371348 18395530 + MGP_AJ_P0091508 Dnm2 protein_coding protein_coding MGP_AJ_T0091509.1 MGP_AJ_G0034431.1 mouse_genomes_project 9 18375173 18402863 + Dnm2 protein_coding retained_intron MGP_AJ_T0091510.1 MGP_AJ_G0034431.1 mouse_genomes_project 9 18390163 18399726 + Dnm2 protein_coding retained_intron MGP_AJ_T0091511.1 MGP_AJ_G0034431.1 mouse_genomes_project 9 18400210 18401503 + Dnm2 protein_coding processed_transcript MGP_AJ_T0016160.1 MGP_AJ_G0014255.1 mouse_genomes_project 9 99174758 99175011 - processed_pseudogene processed_pseudogene MGP_AJ_T0092022.1 MGP_AJ_G0034658.1 mouse_genomes_project 9 39673705 39733559 - MGP_AJ_P0092022 Tbcel protein_coding protein_coding MGP_AJ_T0092023.1 MGP_AJ_G0034658.1 mouse_genomes_project 9 39673705 39718874 - MGP_AJ_P0092023 Tbcel protein_coding protein_coding MGP_AJ_T0092024.1 MGP_AJ_G0034658.1 mouse_genomes_project 9 39674807 39722780 - MGP_AJ_P0092024 Tbcel protein_coding protein_coding MGP_AJ_T0092025.1 MGP_AJ_G0034658.1 mouse_genomes_project 9 39675380 39689641 - Tbcel protein_coding processed_transcript MGP_AJ_T0092026.1 MGP_AJ_G0034658.1 mouse_genomes_project 9 39677065 39733566 - MGP_AJ_P0092026 Tbcel protein_coding protein_coding MGP_AJ_T0092027.1 MGP_AJ_G0034658.1 mouse_genomes_project 9 39677179 39733519 - MGP_AJ_P0092027 Tbcel protein_coding protein_coding MGP_AJ_T0092028.1 MGP_AJ_G0034658.1 mouse_genomes_project 9 39711313 39770196 - MGP_AJ_P0092028 Tbcel protein_coding protein_coding MGP_AJ_T0092327.1 MGP_AJ_G0034758.1 mouse_genomes_project 9 47902741 47909765 - MGP_AJ_P0092327 Pts protein_coding protein_coding MGP_AJ_T0092697.1 MGP_AJ_G0034874.1 mouse_genomes_project 9 56003093 56075240 + MGP_AJ_P0092697 Nptn protein_coding protein_coding MGP_AJ_T0092698.1 MGP_AJ_G0034874.1 mouse_genomes_project 9 56003145 56076800 + MGP_AJ_P0092698 Nptn protein_coding protein_coding MGP_AJ_T0092699.1 MGP_AJ_G0034874.1 mouse_genomes_project 9 56003227 56064491 + MGP_AJ_P0092699 Nptn protein_coding non_stop_decay MGP_AJ_T0092700.1 MGP_AJ_G0034874.1 mouse_genomes_project 9 56003259 56076800 + MGP_AJ_P0092700 Nptn protein_coding protein_coding MGP_AJ_T0092701.1 MGP_AJ_G0034874.1 mouse_genomes_project 9 56003260 56075240 + MGP_AJ_P0092701 Nptn protein_coding protein_coding MGP_AJ_T0092702.1 MGP_AJ_G0034874.1 mouse_genomes_project 9 56003260 56067651 + MGP_AJ_P0092702 Nptn protein_coding nonsense_mediated_decay MGP_AJ_T0092703.1 MGP_AJ_G0034874.1 mouse_genomes_project 9 56003289 56075240 + MGP_AJ_P0092703 Nptn protein_coding protein_coding MGP_AJ_T0092704.1 MGP_AJ_G0034874.1 mouse_genomes_project 9 56003294 56075884 + MGP_AJ_P0092704 Nptn protein_coding nonsense_mediated_decay MGP_AJ_T0092705.1 MGP_AJ_G0034874.1 mouse_genomes_project 9 56003297 56067513 + Nptn protein_coding processed_transcript MGP_AJ_T0092706.1 MGP_AJ_G0034874.1 mouse_genomes_project 9 56052059 56081901 + MGP_AJ_P0092706 Nptn protein_coding nonsense_mediated_decay MGP_AJ_T0092707.1 MGP_AJ_G0034874.1 mouse_genomes_project 9 56052060 56079127 + MGP_AJ_P0092707 Nptn protein_coding protein_coding MGP_AJ_T0092708.1 MGP_AJ_G0034874.1 mouse_genomes_project 9 56074120 56075979 + Nptn protein_coding retained_intron MGP_AJ_T0092709.1 MGP_AJ_G0034874.1 mouse_genomes_project 9 56075897 56076740 + Nptn protein_coding processed_transcript MGP_AJ_T0092826.1 MGP_AJ_G0034902.1 mouse_genomes_project 9 60174929 60284607 + MGP_AJ_P0092826 Itga11 protein_coding protein_coding MGP_AJ_T0092827.1 MGP_AJ_G0034902.1 mouse_genomes_project 9 60174963 60277218 + Itga11 protein_coding retained_intron MGP_AJ_T0093649.1 MGP_AJ_G0035098.1 mouse_genomes_project 9 87515648 87528867 - MGP_AJ_P0093649 Ankrd34c protein_coding protein_coding MGP_AJ_T0093650.1 MGP_AJ_G0035098.1 mouse_genomes_project 9 87518878 87528837 - MGP_AJ_P0093650 Ankrd34c protein_coding protein_coding MGP_AJ_T0092019.1 MGP_AJ_G0034657.1 mouse_genomes_project 9 39591281 39605527 - Tecta protein_coding processed_transcript MGP_AJ_T0092020.1 MGP_AJ_G0034657.1 mouse_genomes_project 9 39591284 39661281 - MGP_AJ_P0092020 Tecta protein_coding protein_coding MGP_AJ_T0092021.1 MGP_AJ_G0034657.1 mouse_genomes_project 9 39591357 39661079 - MGP_AJ_P0092021 Tecta protein_coding protein_coding MGP_AJ_T0093024.1 MGP_AJ_G0034958.1 mouse_genomes_project 9 64269512 64322222 + MGP_AJ_P0093024 Car12 protein_coding protein_coding MGP_AJ_T0093025.1 MGP_AJ_G0034958.1 mouse_genomes_project 9 64269553 64309846 + Car12 protein_coding retained_intron MGP_AJ_T0093026.1 MGP_AJ_G0034958.1 mouse_genomes_project 9 64269554 64303296 + Car12 protein_coding retained_intron MGP_AJ_T0093027.1 MGP_AJ_G0034958.1 mouse_genomes_project 9 64269556 64322219 + MGP_AJ_P0093027 Car12 protein_coding protein_coding MGP_AJ_T0093028.1 MGP_AJ_G0034958.1 mouse_genomes_project 9 64303127 64319694 + MGP_AJ_P0093028 Car12 protein_coding protein_coding MGP_AJ_T0091382.1 MGP_AJ_G0034384.1 mouse_genomes_project 9 16804378 16809660 + MGP_AJ_P0091382 Olfr77 protein_coding protein_coding MGP_AJ_T0100251.1 MGP_AJ_G0038217.1 mouse_genomes_project 9 12125115 12125270 - Gm22658 snRNA snRNA MGP_AJ_T0091528.1 MGP_AJ_G0034436.1 mouse_genomes_project 9 18491208 18494457 + MGP_AJ_P0091528 1810026J23Rik protein_coding protein_coding MGP_AJ_T0100261.1 MGP_AJ_G0038227.1 mouse_genomes_project 9 34900479 34900678 - Gm24764 snRNA snRNA MGP_AJ_T0011096.1 MGP_AJ_G0009218.1 mouse_genomes_project 9 106485009 106485094 + Mir425 miRNA miRNA MGP_AJ_T0098492.1 MGP_AJ_G0036476.1 mouse_genomes_project 9 35628389 35629432 + pseudogene pseudogene MGP_AJ_T0016163.1 MGP_AJ_G0014258.1 mouse_genomes_project 9 100380839 100382340 + processed_pseudogene processed_pseudogene MGP_AJ_T0094577.1 MGP_AJ_G0035265.1 mouse_genomes_project 9 105990885 105999928 - MGP_AJ_P0094577 Apeh protein_coding protein_coding MGP_AJ_T0094578.1 MGP_AJ_G0035265.1 mouse_genomes_project 9 105990895 105991510 - Apeh protein_coding retained_intron MGP_AJ_T0094579.1 MGP_AJ_G0035265.1 mouse_genomes_project 9 105990895 105999948 - Apeh protein_coding retained_intron MGP_AJ_T0094580.1 MGP_AJ_G0035265.1 mouse_genomes_project 9 105991395 105991950 - Apeh protein_coding retained_intron MGP_AJ_T0094581.1 MGP_AJ_G0035265.1 mouse_genomes_project 9 105991629 105994002 - Apeh protein_coding retained_intron MGP_AJ_T0094582.1 MGP_AJ_G0035265.1 mouse_genomes_project 9 105992257 105999958 - Apeh protein_coding retained_intron MGP_AJ_T0094583.1 MGP_AJ_G0035265.1 mouse_genomes_project 9 105997825 105999502 - Apeh protein_coding retained_intron MGP_AJ_T0094584.1 MGP_AJ_G0035265.1 mouse_genomes_project 9 105998104 105999961 - MGP_AJ_P0094584 Apeh protein_coding protein_coding MGP_AJ_T0095079.1 MGP_AJ_G0035350.1 mouse_genomes_project 9 109123267 109126049 - MGP_AJ_P0095079 Ccrl2 protein_coding protein_coding MGP_AJ_T0095080.1 MGP_AJ_G0035350.1 mouse_genomes_project 9 109123612 109126298 - MGP_AJ_P0095080 Ccrl2 protein_coding protein_coding MGP_AJ_T0095081.1 MGP_AJ_G0035350.1 mouse_genomes_project 9 109124808 109126025 - MGP_AJ_P0095081 Ccrl2 protein_coding protein_coding MGP_AJ_T0092177.1 MGP_AJ_G0034705.1 mouse_genomes_project 9 42282591 42293573 - MGP_AJ_P0092177 Cd3g protein_coding protein_coding MGP_AJ_T0092178.1 MGP_AJ_G0034705.1 mouse_genomes_project 9 42282773 42283837 - Cd3g protein_coding retained_intron MGP_AJ_T0092179.1 MGP_AJ_G0034705.1 mouse_genomes_project 9 42286641 42293573 - MGP_AJ_P0092179 Cd3g protein_coding protein_coding MGP_AJ_T0005502.1 MGP_AJ_G0004644.1 mouse_genomes_project 9 93803331 93804803 - antisense antisense MGP_AJ_T0092519.1 MGP_AJ_G0034821.1 mouse_genomes_project 9 52559111 52623706 - Nrg4 protein_coding processed_transcript MGP_AJ_T0092520.1 MGP_AJ_G0034821.1 mouse_genomes_project 9 52559112 52623736 - MGP_AJ_P0092520 Nrg4 protein_coding protein_coding MGP_AJ_T0092521.1 MGP_AJ_G0034821.1 mouse_genomes_project 9 52560111 52582322 - Nrg4 protein_coding processed_transcript MGP_AJ_T0092522.1 MGP_AJ_G0034821.1 mouse_genomes_project 9 52560187 52623698 - MGP_AJ_P0092522 Nrg4 protein_coding nonsense_mediated_decay MGP_AJ_T0092523.1 MGP_AJ_G0034821.1 mouse_genomes_project 9 52560190 52667384 - MGP_AJ_P0092523 Nrg4 protein_coding nonsense_mediated_decay MGP_AJ_T0092524.1 MGP_AJ_G0034821.1 mouse_genomes_project 9 52560191 52623683 - MGP_AJ_P0092524 Nrg4 protein_coding nonsense_mediated_decay MGP_AJ_T0092525.1 MGP_AJ_G0034821.1 mouse_genomes_project 9 52560255 52623692 - Nrg4 protein_coding processed_transcript MGP_AJ_T0092526.1 MGP_AJ_G0034821.1 mouse_genomes_project 9 52564212 52623683 - MGP_AJ_P0092526 Nrg4 protein_coding nonsense_mediated_decay MGP_AJ_T0092527.1 MGP_AJ_G0034821.1 mouse_genomes_project 9 52580560 52623713 - MGP_AJ_P0092527 Nrg4 protein_coding protein_coding MGP_AJ_T0092528.1 MGP_AJ_G0034821.1 mouse_genomes_project 9 52581924 52667479 - Nrg4 protein_coding processed_transcript MGP_AJ_T0092529.1 MGP_AJ_G0034821.1 mouse_genomes_project 9 52588997 52623698 - Nrg4 protein_coding processed_transcript MGP_AJ_T0092530.1 MGP_AJ_G0034821.1 mouse_genomes_project 9 52598400 52623709 - Nrg4 protein_coding processed_transcript MGP_AJ_T0092531.1 MGP_AJ_G0034821.1 mouse_genomes_project 9 52646840 52665824 - Nrg4 protein_coding processed_transcript MGP_AJ_T0101540.1 MGP_AJ_G0039506.1 mouse_genomes_project 9 12241791 12241867 - Gm24339 snoRNA snoRNA MGP_AJ_T0101542.1 MGP_AJ_G0039508.1 mouse_genomes_project 9 17764079 17764164 + Gm24067 snoRNA snoRNA MGP_AJ_T0002467.1 MGP_AJ_G0002376.1 mouse_genomes_project 9 108385311 108387898 - TEC TEC MGP_AJ_T0011051.1 MGP_AJ_G0009173.1 mouse_genomes_project 9 38781589 38781669 + Mir100 miRNA miRNA MGP_AJ_T0093723.1 MGP_AJ_G0035112.1 mouse_genomes_project 9 92300179 92320207 - MGP_AJ_P0093723 1190002N15Rik protein_coding protein_coding MGP_AJ_T0098752.1 MGP_AJ_G0036736.1 mouse_genomes_project 9 60010925 60011034 + n-R5s84 rRNA rRNA MGP_AJ_T0016173.1 MGP_AJ_G0014268.1 mouse_genomes_project 9 106066542 106067065 + processed_pseudogene processed_pseudogene MGP_AJ_T0093639.1 MGP_AJ_G0035092.1 mouse_genomes_project 9 86350383 86359350 + MGP_AJ_P0093639 protein_coding protein_coding MGP_AJ_T0092879.1 MGP_AJ_G0034917.1 mouse_genomes_project 9 61696609 61699997 + MGP_AJ_P0092879 Snapc5 protein_coding protein_coding MGP_AJ_T0093278.1 MGP_AJ_G0035008.1 mouse_genomes_project 9 70748316 70764005 + MGP_AJ_P0093278 Gm20509 protein_coding protein_coding MGP_AJ_T0016049.1 MGP_AJ_G0014144.1 mouse_genomes_project 9 19608761 19609229 - processed_pseudogene processed_pseudogene MGP_AJ_T0093348.1 MGP_AJ_G0035028.1 mouse_genomes_project 9 73841613 73887834 - MGP_AJ_P0093348 Gfral protein_coding protein_coding MGP_AJ_T0093349.1 MGP_AJ_G0035028.1 mouse_genomes_project 9 73841613 73887834 - MGP_AJ_P0093349 Gfral protein_coding nonsense_mediated_decay MGP_AJ_T0091993.1 MGP_AJ_G0034648.1 mouse_genomes_project 9 37877123 37877525 + MGP_AJ_P0091993 Gm21915 protein_coding protein_coding MGP_AJ_T0093919.1 MGP_AJ_G0035157.1 mouse_genomes_project 9 98297833 98327734 - MGP_AJ_P0093919 Il20rb protein_coding protein_coding MGP_AJ_T0093920.1 MGP_AJ_G0035157.1 mouse_genomes_project 9 98297835 98307335 - Il20rb protein_coding retained_intron MGP_AJ_T0093921.1 MGP_AJ_G0035157.1 mouse_genomes_project 9 98297918 98302100 - Il20rb protein_coding processed_transcript MGP_AJ_T0093922.1 MGP_AJ_G0035157.1 mouse_genomes_project 9 98298675 98302072 - Il20rb protein_coding retained_intron MGP_AJ_T0093923.1 MGP_AJ_G0035157.1 mouse_genomes_project 9 98299221 98311033 - Il20rb protein_coding processed_transcript MGP_AJ_T0093924.1 MGP_AJ_G0035157.1 mouse_genomes_project 9 98306167 98327331 - Il20rb protein_coding retained_intron MGP_AJ_T0093748.1 MGP_AJ_G0035119.1 mouse_genomes_project 9 93532874 93626410 - MGP_AJ_P0093748 Pls1 protein_coding protein_coding MGP_AJ_T0093749.1 MGP_AJ_G0035119.1 mouse_genomes_project 9 93564679 93598434 - MGP_AJ_P0093749 Pls1 protein_coding protein_coding MGP_AJ_T0093750.1 MGP_AJ_G0035119.1 mouse_genomes_project 9 93566052 93626435 - Pls1 protein_coding processed_transcript MGP_AJ_T0091716.1 MGP_AJ_G0034506.1 mouse_genomes_project 9 32016845 32067871 - MGP_AJ_P0091716 St3gal4 protein_coding protein_coding MGP_AJ_T0002375.1 MGP_AJ_G0002285.1 mouse_genomes_project 9 70232555 70234633 + TEC TEC MGP_AJ_T0091873.1 MGP_AJ_G0034558.1 mouse_genomes_project 9 35112217 35113253 + MGP_AJ_P0091873 Olfr883 protein_coding protein_coding MGP_AJ_T0016172.1 MGP_AJ_G0014267.1 mouse_genomes_project 9 105073985 105075254 + processed_pseudogene processed_pseudogene MGP_AJ_T0099105.1 MGP_AJ_G0037077.1 mouse_genomes_project 9 25122582 25123940 + Gm15606 sense_intronic sense_intronic MGP_AJ_T0099106.1 MGP_AJ_G0037077.1 mouse_genomes_project 9 25122635 25124217 + Gm15606 sense_intronic sense_intronic MGP_AJ_T0005533.1 MGP_AJ_G0004669.1 mouse_genomes_project 9 105455771 105465378 - Gm9917 antisense antisense MGP_AJ_T0005534.1 MGP_AJ_G0004669.1 mouse_genomes_project 9 105459799 105465381 - Gm9917 antisense antisense MGP_AJ_T0005535.1 MGP_AJ_G0004669.1 mouse_genomes_project 9 105460705 105463890 - Gm9917 antisense antisense MGP_AJ_T0005536.1 MGP_AJ_G0004669.1 mouse_genomes_project 9 105461309 105463746 - Gm9917 antisense antisense MGP_AJ_T0016125.1 MGP_AJ_G0014220.1 mouse_genomes_project 9 87549538 87550001 + processed_pseudogene processed_pseudogene MGP_AJ_T0101567.1 MGP_AJ_G0039533.1 mouse_genomes_project 9 62408417 62408559 - Gm24347 snoRNA snoRNA MGP_AJ_T0093384.1 MGP_AJ_G0035036.1 mouse_genomes_project 9 75640778 75709618 + MGP_AJ_P0093384 Elovl5 protein_coding protein_coding MGP_AJ_T0093385.1 MGP_AJ_G0035036.1 mouse_genomes_project 9 75640848 75682179 + Elovl5 protein_coding retained_intron MGP_AJ_T0093386.1 MGP_AJ_G0035036.1 mouse_genomes_project 9 75646640 75704965 + MGP_AJ_P0093386 Elovl5 protein_coding protein_coding MGP_AJ_T0093387.1 MGP_AJ_G0035036.1 mouse_genomes_project 9 75665804 75685482 + MGP_AJ_P0093387 Elovl5 protein_coding protein_coding MGP_AJ_T0093373.1 MGP_AJ_G0035033.1 mouse_genomes_project 9 75140274 75258224 - MGP_AJ_P0093373 Lrrc1 protein_coding protein_coding MGP_AJ_T0093374.1 MGP_AJ_G0035033.1 mouse_genomes_project 9 75140432 75257449 - MGP_AJ_P0093374 Lrrc1 protein_coding protein_coding MGP_AJ_T0093375.1 MGP_AJ_G0035033.1 mouse_genomes_project 9 75140526 75158102 - Lrrc1 protein_coding processed_transcript MGP_AJ_T0093376.1 MGP_AJ_G0035033.1 mouse_genomes_project 9 75140541 75151610 - MGP_AJ_P0093376 Lrrc1 protein_coding nonsense_mediated_decay MGP_AJ_T0093377.1 MGP_AJ_G0035033.1 mouse_genomes_project 9 75144507 75151906 - Lrrc1 protein_coding retained_intron MGP_AJ_T0093378.1 MGP_AJ_G0035033.1 mouse_genomes_project 9 75158107 75258204 - MGP_AJ_P0093378 Lrrc1 protein_coding protein_coding MGP_AJ_T0093379.1 MGP_AJ_G0035033.1 mouse_genomes_project 9 75167474 75213724 - Lrrc1 protein_coding processed_transcript MGP_AJ_T0093380.1 MGP_AJ_G0035033.1 mouse_genomes_project 9 75181506 75258202 - Lrrc1 protein_coding processed_transcript MGP_AJ_T0093381.1 MGP_AJ_G0035033.1 mouse_genomes_project 9 75253867 75258144 - Lrrc1 protein_coding retained_intron MGP_AJ_T0016185.1 MGP_AJ_G0014280.1 mouse_genomes_project 9 119451988 119452338 + processed_pseudogene processed_pseudogene MGP_AJ_T0094274.1 MGP_AJ_G0035223.1 mouse_genomes_project 9 104718850 104781354 + MGP_AJ_P0094274 Vprbp protein_coding protein_coding MGP_AJ_T0094275.1 MGP_AJ_G0035223.1 mouse_genomes_project 9 104729354 104782298 + MGP_AJ_P0094275 Vprbp protein_coding protein_coding MGP_AJ_T0094277.1 MGP_AJ_G0035223.1 mouse_genomes_project 9 104753313 104755512 + Vprbp protein_coding retained_intron MGP_AJ_T0094279.1 MGP_AJ_G0035223.1 mouse_genomes_project 9 104775626 104781520 + MGP_AJ_P0094279 Vprbp protein_coding protein_coding MGP_AJ_T0011030.1 MGP_AJ_G0009152.1 mouse_genomes_project 9 1247506 1247573 - Gm23992 miRNA miRNA MGP_AJ_T0002399.1 MGP_AJ_G0002308.1 mouse_genomes_project 9 84472321 84473480 - TEC TEC MGP_AJ_T0098763.1 MGP_AJ_G0036747.1 mouse_genomes_project 9 113789838 113789957 - n-R5s92 rRNA rRNA MGP_AJ_T0002359.1 MGP_AJ_G0002269.1 mouse_genomes_project 9 53607449 53609018 + TEC TEC MGP_AJ_T0092612.1 MGP_AJ_G0034846.1 mouse_genomes_project 9 54823250 54850068 - MGP_AJ_P0092612 Scamp5 protein_coding unknown_likely_coding MGP_AJ_T0095186.1 MGP_AJ_G0035376.1 mouse_genomes_project 9 113063507 113098664 - MGP_AJ_P0095186 Gpd1l protein_coding protein_coding MGP_AJ_T0095187.1 MGP_AJ_G0035376.1 mouse_genomes_project 9 113067490 113098551 - MGP_AJ_P0095187 Gpd1l protein_coding protein_coding MGP_AJ_T0095188.1 MGP_AJ_G0035376.1 mouse_genomes_project 9 113075098 113083469 - Gpd1l protein_coding processed_transcript MGP_AJ_T0094255.1 MGP_AJ_G0035218.1 mouse_genomes_project 9 104458477 104461027 - MGP_AJ_P0094255 Iqcf4 protein_coding protein_coding MGP_AJ_T0094257.1 MGP_AJ_G0035220.1 mouse_genomes_project 9 104528507 104533552 - MGP_AJ_P0094257 Grm2 protein_coding protein_coding MGP_AJ_T0094258.1 MGP_AJ_G0035220.1 mouse_genomes_project 9 104528529 104541451 - MGP_AJ_P0094258 Grm2 protein_coding protein_coding MGP_AJ_T0094259.1 MGP_AJ_G0035220.1 mouse_genomes_project 9 104530303 104541453 - MGP_AJ_P0094259 Grm2 protein_coding protein_coding MGP_AJ_T0094260.1 MGP_AJ_G0035220.1 mouse_genomes_project 9 104530402 104532038 - Grm2 protein_coding processed_transcript MGP_AJ_T0101582.1 MGP_AJ_G0039548.1 mouse_genomes_project 9 85770863 85770993 - Gm23176 snoRNA snoRNA MGP_AJ_T0091743.1 MGP_AJ_G0034511.1 mouse_genomes_project 9 32167942 32215859 - MGP_AJ_P0091743 Fam118b protein_coding protein_coding MGP_AJ_T0091744.1 MGP_AJ_G0034511.1 mouse_genomes_project 9 32167997 32215884 - MGP_AJ_P0091744 Fam118b protein_coding protein_coding MGP_AJ_T0091745.1 MGP_AJ_G0034511.1 mouse_genomes_project 9 32167997 32215856 - MGP_AJ_P0091745 Fam118b protein_coding protein_coding MGP_AJ_T0091746.1 MGP_AJ_G0034511.1 mouse_genomes_project 9 32168212 32186230 - MGP_AJ_P0091746 Fam118b protein_coding protein_coding MGP_AJ_T0091747.1 MGP_AJ_G0034511.1 mouse_genomes_project 9 32172341 32215846 - MGP_AJ_P0091747 Fam118b protein_coding protein_coding MGP_AJ_T0091748.1 MGP_AJ_G0034511.1 mouse_genomes_project 9 32182842 32215859 - Fam118b protein_coding retained_intron MGP_AJ_T0091749.1 MGP_AJ_G0034511.1 mouse_genomes_project 9 32214394 32215859 - Fam118b protein_coding retained_intron MGP_AJ_T0009312.1 MGP_AJ_G0007480.1 mouse_genomes_project 9 94220069 94222424 - BC043934 lincRNA lincRNA MGP_AJ_T0009313.1 MGP_AJ_G0007480.1 mouse_genomes_project 9 94220070 94221720 - BC043934 lincRNA lincRNA MGP_AJ_T0093130.1 MGP_AJ_G0034984.1 mouse_genomes_project 9 68288822 68290432 + MGP_AJ_P0093130 Gm10642 protein_coding protein_coding MGP_AJ_T0016103.1 MGP_AJ_G0014198.1 mouse_genomes_project 9 75007354 75007756 - processed_pseudogene processed_pseudogene MGP_AJ_T0009247.1 MGP_AJ_G0007429.1 mouse_genomes_project 9 46437422 46441549 - 1700042D02Rik lincRNA lincRNA MGP_AJ_T0094533.1 MGP_AJ_G0035259.1 mouse_genomes_project 9 105900410 105950390 + Gm20662 protein_coding retained_intron MGP_AJ_T0094538.1 MGP_AJ_G0035259.1 mouse_genomes_project 9 105902050 105936913 + MGP_AJ_P0094538 Gm20662 protein_coding nonsense_mediated_decay MGP_AJ_T0094539.1 MGP_AJ_G0035259.1 mouse_genomes_project 9 105902088 105936905 + MGP_AJ_P0094539 Gm20662 protein_coding nonsense_mediated_decay MGP_AJ_T0005490.1 MGP_AJ_G0004639.1 mouse_genomes_project 9 92472038 92478651 - Gm16262 antisense antisense MGP_AJ_T0094805.1 MGP_AJ_G0035299.1 mouse_genomes_project 9 106871577 106910012 + MGP_AJ_P0094805 Pfkfb4 protein_coding protein_coding MGP_AJ_T0094806.1 MGP_AJ_G0035299.1 mouse_genomes_project 9 106871701 106910012 + MGP_AJ_P0094806 Pfkfb4 protein_coding protein_coding MGP_AJ_T0094807.1 MGP_AJ_G0035299.1 mouse_genomes_project 9 106871747 106879069 + Pfkfb4 protein_coding retained_intron MGP_AJ_T0094808.1 MGP_AJ_G0035299.1 mouse_genomes_project 9 106871791 106872701 + Pfkfb4 protein_coding retained_intron MGP_AJ_T0094809.1 MGP_AJ_G0035299.1 mouse_genomes_project 9 106871815 106908496 + Pfkfb4 protein_coding retained_intron MGP_AJ_T0094810.1 MGP_AJ_G0035299.1 mouse_genomes_project 9 106871815 106908496 + MGP_AJ_P0094810 Pfkfb4 protein_coding nonsense_mediated_decay MGP_AJ_T0094811.1 MGP_AJ_G0035299.1 mouse_genomes_project 9 106871815 106908496 + MGP_AJ_P0094811 Pfkfb4 protein_coding nonsense_mediated_decay MGP_AJ_T0094812.1 MGP_AJ_G0035299.1 mouse_genomes_project 9 106878687 106890495 + Pfkfb4 protein_coding processed_transcript MGP_AJ_T0094813.1 MGP_AJ_G0035299.1 mouse_genomes_project 9 106891024 106906679 + MGP_AJ_P0094813 Pfkfb4 protein_coding nonsense_mediated_decay MGP_AJ_T0094814.1 MGP_AJ_G0035299.1 mouse_genomes_project 9 106897256 106909981 + Pfkfb4 protein_coding processed_transcript MGP_AJ_T0094955.1 MGP_AJ_G0035324.1 mouse_genomes_project 9 108299673 108317504 + MGP_AJ_P0094955 Cspg5 protein_coding protein_coding MGP_AJ_T0094956.1 MGP_AJ_G0035324.1 mouse_genomes_project 9 108299673 108317505 + MGP_AJ_P0094956 Cspg5 protein_coding protein_coding MGP_AJ_T0094957.1 MGP_AJ_G0035324.1 mouse_genomes_project 9 108301373 108303496 + Cspg5 protein_coding retained_intron MGP_AJ_T0094958.1 MGP_AJ_G0035324.1 mouse_genomes_project 9 108301421 108317492 + MGP_AJ_P0094958 Cspg5 protein_coding protein_coding MGP_AJ_T0094959.1 MGP_AJ_G0035324.1 mouse_genomes_project 9 108301955 108317504 + MGP_AJ_P0094959 Cspg5 protein_coding protein_coding MGP_AJ_T0016081.1 MGP_AJ_G0014176.1 mouse_genomes_project 9 69570891 69570990 + processed_pseudogene processed_pseudogene MGP_AJ_T0011077.1 MGP_AJ_G0009199.1 mouse_genomes_project 9 68031103 68031163 - Mir5626 miRNA miRNA MGP_AJ_T0018552.1 MGP_AJ_G0015725.1 mouse_genomes_project 9 77699762 77700194 + Gm3211 processed_transcript processed_transcript MGP_AJ_T0002423.1 MGP_AJ_G0002332.1 mouse_genomes_project 9 96501620 96502148 - TEC TEC MGP_AJ_T0092616.1 MGP_AJ_G0034850.1 mouse_genomes_project 9 54929209 54937900 - MGP_AJ_P0092616 Mpi protein_coding protein_coding MGP_AJ_T0092617.1 MGP_AJ_G0034850.1 mouse_genomes_project 9 54933219 54937403 - Mpi protein_coding retained_intron MGP_AJ_T0092618.1 MGP_AJ_G0034850.1 mouse_genomes_project 9 54933548 54934631 - Mpi protein_coding retained_intron MGP_AJ_T0092619.1 MGP_AJ_G0034850.1 mouse_genomes_project 9 54934088 54937846 - MGP_AJ_P0092619 Mpi protein_coding nonsense_mediated_decay MGP_AJ_T0092620.1 MGP_AJ_G0034850.1 mouse_genomes_project 9 54934999 54937853 - Mpi protein_coding retained_intron MGP_AJ_T0094960.1 MGP_AJ_G0035325.1 mouse_genomes_project 9 108360391 108378663 + MGP_AJ_P0094960 Elp6 protein_coding protein_coding MGP_AJ_T0094961.1 MGP_AJ_G0035325.1 mouse_genomes_project 9 108360422 108379442 + MGP_AJ_P0094961 Elp6 protein_coding protein_coding MGP_AJ_T0094962.1 MGP_AJ_G0035325.1 mouse_genomes_project 9 108360458 108376912 + MGP_AJ_P0094962 Elp6 protein_coding nonsense_mediated_decay MGP_AJ_T0094963.1 MGP_AJ_G0035325.1 mouse_genomes_project 9 108360714 108373180 + MGP_AJ_P0094963 Elp6 protein_coding protein_coding MGP_AJ_T0094964.1 MGP_AJ_G0035325.1 mouse_genomes_project 9 108367119 108371402 + Elp6 protein_coding retained_intron MGP_AJ_T0092573.1 MGP_AJ_G0034839.1 mouse_genomes_project 9 54428657 54446075 + MGP_AJ_P0092573 Sin3a protein_coding protein_coding MGP_AJ_T0092574.1 MGP_AJ_G0034839.1 mouse_genomes_project 9 54431955 54485400 + MGP_AJ_P0092574 Sin3a protein_coding protein_coding MGP_AJ_T0092575.1 MGP_AJ_G0034839.1 mouse_genomes_project 9 54432993 54485398 + MGP_AJ_P0092575 Sin3a protein_coding protein_coding MGP_AJ_T0092576.1 MGP_AJ_G0034839.1 mouse_genomes_project 9 54433016 54485400 + MGP_AJ_P0092576 Sin3a protein_coding protein_coding MGP_AJ_T0092577.1 MGP_AJ_G0034839.1 mouse_genomes_project 9 54433245 54452021 + MGP_AJ_P0092577 Sin3a protein_coding protein_coding MGP_AJ_T0092578.1 MGP_AJ_G0034839.1 mouse_genomes_project 9 54437775 54485400 + MGP_AJ_P0092578 Sin3a protein_coding protein_coding MGP_AJ_T0092579.1 MGP_AJ_G0034839.1 mouse_genomes_project 9 54443159 54485400 + MGP_AJ_P0092579 Sin3a protein_coding protein_coding MGP_AJ_T0092580.1 MGP_AJ_G0034839.1 mouse_genomes_project 9 54451865 54454498 + Sin3a protein_coding retained_intron MGP_AJ_T0092581.1 MGP_AJ_G0034839.1 mouse_genomes_project 9 54470490 54482222 + Sin3a protein_coding retained_intron MGP_AJ_T0016108.1 MGP_AJ_G0014203.1 mouse_genomes_project 9 78701142 78703038 - processed_pseudogene processed_pseudogene MGP_AJ_T0092695.1 MGP_AJ_G0034873.1 mouse_genomes_project 9 55943772 55961202 - MGP_AJ_P0092695 Cd276 protein_coding protein_coding MGP_AJ_T0092696.1 MGP_AJ_G0034873.1 mouse_genomes_project 9 55943774 55975694 - MGP_AJ_P0092696 Cd276 protein_coding protein_coding MGP_AJ_T0092220.1 MGP_AJ_G0034723.1 mouse_genomes_project 9 43207971 43251918 - MGP_AJ_P0092220 Rnf214 protein_coding protein_coding MGP_AJ_T0092221.1 MGP_AJ_G0034723.1 mouse_genomes_project 9 43208237 43251926 - MGP_AJ_P0092221 Rnf214 protein_coding protein_coding MGP_AJ_T0092222.1 MGP_AJ_G0034723.1 mouse_genomes_project 9 43208237 43251456 - MGP_AJ_P0092222 Rnf214 protein_coding protein_coding MGP_AJ_T0092223.1 MGP_AJ_G0034723.1 mouse_genomes_project 9 43208836 43251422 - Rnf214 protein_coding retained_intron MGP_AJ_T0092224.1 MGP_AJ_G0034723.1 mouse_genomes_project 9 43208845 43251910 - MGP_AJ_P0092224 Rnf214 protein_coding nonsense_mediated_decay MGP_AJ_T0092225.1 MGP_AJ_G0034723.1 mouse_genomes_project 9 43209380 43251943 - MGP_AJ_P0092225 Rnf214 protein_coding protein_coding MGP_AJ_T0092226.1 MGP_AJ_G0034723.1 mouse_genomes_project 9 43213421 43214029 - Rnf214 protein_coding retained_intron MGP_AJ_T0092227.1 MGP_AJ_G0034723.1 mouse_genomes_project 9 43216109 43216821 - Rnf214 protein_coding retained_intron MGP_AJ_T0092228.1 MGP_AJ_G0034723.1 mouse_genomes_project 9 43235031 43242956 - Rnf214 protein_coding retained_intron MGP_AJ_T0092229.1 MGP_AJ_G0034723.1 mouse_genomes_project 9 43235326 43251436 - MGP_AJ_P0092229 Rnf214 protein_coding nonsense_mediated_decay MGP_AJ_T0092230.1 MGP_AJ_G0034723.1 mouse_genomes_project 9 43240513 43245173 - Rnf214 protein_coding retained_intron MGP_AJ_T0095363.1 MGP_AJ_G0035427.1 mouse_genomes_project 9 119916514 119919047 + MGP_AJ_P0095363 Deb1 protein_coding protein_coding MGP_AJ_T0005548.1 MGP_AJ_G0004681.1 mouse_genomes_project 9 109052537 109053955 + 1700061E17Rik antisense antisense MGP_AJ_T0091971.1 MGP_AJ_G0034643.1 mouse_genomes_project 9 37346194 37348948 + MGP_AJ_P0091971 Tmem225 protein_coding protein_coding MGP_AJ_T0016118.1 MGP_AJ_G0014213.1 mouse_genomes_project 9 84087813 84088357 - processed_pseudogene processed_pseudogene MGP_AJ_T0098751.1 MGP_AJ_G0036735.1 mouse_genomes_project 9 57527036 57527147 - Gm23668 rRNA rRNA MGP_AJ_T0005537.1 MGP_AJ_G0004670.1 mouse_genomes_project 9 105472735 105484294 - Gm16343 antisense antisense MGP_AJ_T0091493.1 MGP_AJ_G0034429.1 mouse_genomes_project 9 18257100 18292425 + MGP_AJ_P0091493 Ilf3 protein_coding protein_coding MGP_AJ_T0091494.1 MGP_AJ_G0034429.1 mouse_genomes_project 9 18257100 18295983 + MGP_AJ_P0091494 Ilf3 protein_coding protein_coding MGP_AJ_T0091495.1 MGP_AJ_G0034429.1 mouse_genomes_project 9 18293499 18295992 + MGP_AJ_P0091495 Ilf3 protein_coding unknown_likely_coding MGP_AJ_T0092611.1 MGP_AJ_G0034845.1 mouse_genomes_project 9 54794027 54821358 - MGP_AJ_P0092611 Ppcdc protein_coding unknown_likely_coding MGP_AJ_T0099107.1 MGP_AJ_G0037078.1 mouse_genomes_project 9 26526084 26528111 - Gm15521 sense_intronic sense_intronic MGP_AJ_T0093330.1 MGP_AJ_G0035020.1 mouse_genomes_project 9 73110765 73111296 - MGP_AJ_P0093330 A130057D12Rik protein_coding protein_coding MGP_AJ_T0093151.1 MGP_AJ_G0034990.1 mouse_genomes_project 9 69086157 69204051 - MGP_AJ_P0093151 Gcom1 protein_coding nonsense_mediated_decay MGP_AJ_T0093152.1 MGP_AJ_G0034990.1 mouse_genomes_project 9 69086157 69204051 - MGP_AJ_P0093152 Gcom1 protein_coding nonsense_mediated_decay MGP_AJ_T0093153.1 MGP_AJ_G0034990.1 mouse_genomes_project 9 69086157 69204051 - MGP_AJ_P0093153 Gcom1 protein_coding protein_coding MGP_AJ_T0093154.1 MGP_AJ_G0034990.1 mouse_genomes_project 9 69086157 69204051 - MGP_AJ_P0093154 Gcom1 protein_coding protein_coding MGP_AJ_T0093465.1 MGP_AJ_G0035060.1 mouse_genomes_project 9 77959475 78108395 + MGP_AJ_P0093465 Myo6 protein_coding protein_coding MGP_AJ_T0093466.1 MGP_AJ_G0035060.1 mouse_genomes_project 9 77959482 77962519 + Myo6 protein_coding retained_intron MGP_AJ_T0093467.1 MGP_AJ_G0035060.1 mouse_genomes_project 9 77959484 78108394 + MGP_AJ_P0093467 Myo6 protein_coding protein_coding MGP_AJ_T0093468.1 MGP_AJ_G0035060.1 mouse_genomes_project 9 77959671 78104761 + MGP_AJ_P0093468 Myo6 protein_coding protein_coding MGP_AJ_T0093469.1 MGP_AJ_G0035060.1 mouse_genomes_project 9 78012497 78104714 + MGP_AJ_P0093469 Myo6 protein_coding protein_coding MGP_AJ_T0093470.1 MGP_AJ_G0035060.1 mouse_genomes_project 9 78012515 78108395 + MGP_AJ_P0093470 Myo6 protein_coding protein_coding MGP_AJ_T0093471.1 MGP_AJ_G0035060.1 mouse_genomes_project 9 78012523 78108395 + MGP_AJ_P0093471 Myo6 protein_coding protein_coding MGP_AJ_T0093472.1 MGP_AJ_G0035060.1 mouse_genomes_project 9 78057977 78062580 + Myo6 protein_coding retained_intron MGP_AJ_T0093473.1 MGP_AJ_G0035060.1 mouse_genomes_project 9 78081633 78082728 + Myo6 protein_coding retained_intron MGP_AJ_T0093474.1 MGP_AJ_G0035060.1 mouse_genomes_project 9 78082500 78088880 + Myo6 protein_coding retained_intron MGP_AJ_T0093475.1 MGP_AJ_G0035060.1 mouse_genomes_project 9 78102428 78104459 + Myo6 protein_coding processed_transcript MGP_AJ_T0093476.1 MGP_AJ_G0035060.1 mouse_genomes_project 9 78103577 78105267 + Myo6 protein_coding retained_intron MGP_AJ_T0011059.1 MGP_AJ_G0009181.1 mouse_genomes_project 9 43284368 43284438 - Mir7087 miRNA miRNA MGP_AJ_T0016130.1 MGP_AJ_G0014225.1 mouse_genomes_project 9 88552847 88553139 - processed_pseudogene processed_pseudogene MGP_AJ_T0094413.1 MGP_AJ_G0035245.1 mouse_genomes_project 9 105548685 105557897 - MGP_AJ_P0094413 Slc38a3 protein_coding protein_coding MGP_AJ_T0094414.1 MGP_AJ_G0035245.1 mouse_genomes_project 9 105549215 105566823 - MGP_AJ_P0094414 Slc38a3 protein_coding protein_coding MGP_AJ_T0094415.1 MGP_AJ_G0035245.1 mouse_genomes_project 9 105549217 105568449 - Slc38a3 protein_coding retained_intron MGP_AJ_T0094416.1 MGP_AJ_G0035245.1 mouse_genomes_project 9 105549221 105566875 - MGP_AJ_P0094416 Slc38a3 protein_coding protein_coding MGP_AJ_T0094417.1 MGP_AJ_G0035245.1 mouse_genomes_project 9 105549221 105568414 - MGP_AJ_P0094417 Slc38a3 protein_coding protein_coding MGP_AJ_T0094418.1 MGP_AJ_G0035245.1 mouse_genomes_project 9 105553395 105555010 - MGP_AJ_P0094418 Slc38a3 protein_coding nonsense_mediated_decay MGP_AJ_T0094419.1 MGP_AJ_G0035245.1 mouse_genomes_project 9 105553425 105554597 - MGP_AJ_P0094419 Slc38a3 protein_coding nonsense_mediated_decay MGP_AJ_T0094420.1 MGP_AJ_G0035245.1 mouse_genomes_project 9 105553445 105554388 - Slc38a3 protein_coding retained_intron MGP_AJ_T0094421.1 MGP_AJ_G0035245.1 mouse_genomes_project 9 105554769 105555629 - Slc38a3 protein_coding retained_intron MGP_AJ_T0094422.1 MGP_AJ_G0035245.1 mouse_genomes_project 9 105555264 105557587 - Slc38a3 protein_coding processed_transcript MGP_AJ_T0094423.1 MGP_AJ_G0035245.1 mouse_genomes_project 9 105555997 105568967 - MGP_AJ_P0094423 Slc38a3 protein_coding protein_coding MGP_AJ_T0094424.1 MGP_AJ_G0035245.1 mouse_genomes_project 9 105556178 105568446 - MGP_AJ_P0094424 Slc38a3 protein_coding protein_coding MGP_AJ_T0094425.1 MGP_AJ_G0035245.1 mouse_genomes_project 9 105557003 105564869 - MGP_AJ_P0094425 Slc38a3 protein_coding protein_coding MGP_AJ_T0094426.1 MGP_AJ_G0035245.1 mouse_genomes_project 9 105557586 105568459 - Slc38a3 protein_coding processed_transcript MGP_AJ_T0009259.1 MGP_AJ_G0007440.1 mouse_genomes_project 9 58856935 58858332 - Gm10655 lincRNA lincRNA MGP_AJ_T0009260.1 MGP_AJ_G0007440.1 mouse_genomes_project 9 58857016 58857766 - Gm10655 lincRNA lincRNA MGP_AJ_T0101548.1 MGP_AJ_G0039514.1 mouse_genomes_project 9 30874383 30874514 + Gm25439 snoRNA snoRNA MGP_AJ_T0016127.1 MGP_AJ_G0014222.1 mouse_genomes_project 9 88011427 88011711 - processed_pseudogene processed_pseudogene MGP_AJ_T0092466.1 MGP_AJ_G0034802.1 mouse_genomes_project 9 51509768 51537314 - MGP_AJ_P0092466 Cyp19a1 protein_coding protein_coding MGP_AJ_T0002449.1 MGP_AJ_G0002358.1 mouse_genomes_project 9 102153382 102156364 - TEC TEC MGP_AJ_T0093899.1 MGP_AJ_G0035152.1 mouse_genomes_project 9 97390937 97399728 + MGP_AJ_P0093899 Dbr1 protein_coding protein_coding MGP_AJ_T0093900.1 MGP_AJ_G0035152.1 mouse_genomes_project 9 97390966 97397656 + MGP_AJ_P0093900 Dbr1 protein_coding protein_coding MGP_AJ_T0093901.1 MGP_AJ_G0035152.1 mouse_genomes_project 9 97391218 97397264 + MGP_AJ_P0093901 Dbr1 protein_coding protein_coding MGP_AJ_T0093902.1 MGP_AJ_G0035152.1 mouse_genomes_project 9 97391246 97397273 + MGP_AJ_P0093902 Dbr1 protein_coding protein_coding MGP_AJ_T0093903.1 MGP_AJ_G0035152.1 mouse_genomes_project 9 97395416 97399065 + MGP_AJ_P0093903 Dbr1 protein_coding nonsense_mediated_decay MGP_AJ_T0093904.1 MGP_AJ_G0035152.1 mouse_genomes_project 9 97395511 97397904 + MGP_AJ_P0093904 Dbr1 protein_coding protein_coding MGP_AJ_T0093067.1 MGP_AJ_G0034967.1 mouse_genomes_project 9 65347239 65348733 + MGP_AJ_P0093067 C2cd4b protein_coding protein_coding MGP_AJ_T0092117.1 MGP_AJ_G0034691.1 mouse_genomes_project 9 41726196 41732832 - MGP_AJ_P0092117 Foxr1 protein_coding protein_coding MGP_AJ_T0002452.1 MGP_AJ_G0002361.1 mouse_genomes_project 9 103602216 103602841 + TEC TEC MGP_AJ_T0098854.1 MGP_AJ_G0036838.1 mouse_genomes_project 9 61815904 61816039 + Gm24289 scaRNA scaRNA MGP_AJ_T0011741.1 MGP_AJ_G0009863.1 mouse_genomes_project 9 77826314 77826600 + Gm25433 misc_RNA misc_RNA MGP_AJ_T0093896.1 MGP_AJ_G0035151.1 mouse_genomes_project 9 97290010 97383791 - MGP_AJ_P0093896 Armc8 protein_coding protein_coding MGP_AJ_T0093897.1 MGP_AJ_G0035151.1 mouse_genomes_project 9 97330720 97383538 - MGP_AJ_P0093897 Armc8 protein_coding protein_coding MGP_AJ_T0093898.1 MGP_AJ_G0035151.1 mouse_genomes_project 9 97365962 97383555 - Armc8 protein_coding retained_intron MGP_AJ_T0095016.1 MGP_AJ_G0035334.1 mouse_genomes_project 9 108716915 108772366 + MGP_AJ_P0095016 Ccdc12 protein_coding protein_coding MGP_AJ_T0095017.1 MGP_AJ_G0035334.1 mouse_genomes_project 9 108716937 108718091 + Ccdc12 protein_coding retained_intron MGP_AJ_T0095018.1 MGP_AJ_G0035334.1 mouse_genomes_project 9 108716942 108760933 + Ccdc12 protein_coding retained_intron MGP_AJ_T0095019.1 MGP_AJ_G0035334.1 mouse_genomes_project 9 108716950 108772015 + MGP_AJ_P0095019 Ccdc12 protein_coding protein_coding MGP_AJ_T0095020.1 MGP_AJ_G0035334.1 mouse_genomes_project 9 108716954 108769497 + Ccdc12 protein_coding retained_intron MGP_AJ_T0095021.1 MGP_AJ_G0035334.1 mouse_genomes_project 9 108717024 108772273 + Ccdc12 protein_coding processed_transcript MGP_AJ_T0095022.1 MGP_AJ_G0035334.1 mouse_genomes_project 9 108727280 108772045 + Ccdc12 protein_coding processed_transcript MGP_AJ_T0095023.1 MGP_AJ_G0035334.1 mouse_genomes_project 9 108770653 108772347 + MGP_AJ_P0095023 Ccdc12 protein_coding protein_coding MGP_AJ_T0095024.1 MGP_AJ_G0035334.1 mouse_genomes_project 9 108770770 108772353 + Ccdc12 protein_coding retained_intron MGP_AJ_T0095025.1 MGP_AJ_G0035334.1 mouse_genomes_project 9 108770803 108772224 + Ccdc12 protein_coding retained_intron MGP_AJ_T0016100.1 MGP_AJ_G0014195.1 mouse_genomes_project 9 74694166 74694371 - processed_pseudogene processed_pseudogene MGP_AJ_T0095358.1 MGP_AJ_G0035426.1 mouse_genomes_project 9 119885846 119911155 - MGP_AJ_P0095358 Sec22c protein_coding protein_coding MGP_AJ_T0095359.1 MGP_AJ_G0035426.1 mouse_genomes_project 9 119888748 119911591 - MGP_AJ_P0095359 Sec22c protein_coding protein_coding MGP_AJ_T0095360.1 MGP_AJ_G0035426.1 mouse_genomes_project 9 119890275 119911105 - MGP_AJ_P0095360 Sec22c protein_coding nonsense_mediated_decay MGP_AJ_T0095361.1 MGP_AJ_G0035426.1 mouse_genomes_project 9 119893911 119896176 - Sec22c protein_coding retained_intron MGP_AJ_T0095362.1 MGP_AJ_G0035426.1 mouse_genomes_project 9 119901318 119911616 - MGP_AJ_P0095362 Sec22c protein_coding protein_coding MGP_AJ_T0016065.1 MGP_AJ_G0014160.1 mouse_genomes_project 9 42589363 42589599 + processed_pseudogene processed_pseudogene MGP_AJ_T0092127.1 MGP_AJ_G0034697.1 mouse_genomes_project 9 41989774 42032587 - MGP_AJ_P0092127 Phldb1 protein_coding protein_coding MGP_AJ_T0092128.1 MGP_AJ_G0034697.1 mouse_genomes_project 9 41989778 42017669 - MGP_AJ_P0092128 Phldb1 protein_coding protein_coding MGP_AJ_T0092129.1 MGP_AJ_G0034697.1 mouse_genomes_project 9 41989778 42020045 - MGP_AJ_P0092129 Phldb1 protein_coding protein_coding MGP_AJ_T0092130.1 MGP_AJ_G0034697.1 mouse_genomes_project 9 41989778 42040997 - MGP_AJ_P0092130 Phldb1 protein_coding protein_coding MGP_AJ_T0092131.1 MGP_AJ_G0034697.1 mouse_genomes_project 9 41989778 42017694 - MGP_AJ_P0092131 Phldb1 protein_coding protein_coding MGP_AJ_T0092132.1 MGP_AJ_G0034697.1 mouse_genomes_project 9 41989778 42032566 - MGP_AJ_P0092132 Phldb1 protein_coding protein_coding MGP_AJ_T0092133.1 MGP_AJ_G0034697.1 mouse_genomes_project 9 41989780 42032587 - MGP_AJ_P0092133 Phldb1 protein_coding protein_coding MGP_AJ_T0092134.1 MGP_AJ_G0034697.1 mouse_genomes_project 9 41989780 42006153 - MGP_AJ_P0092134 Phldb1 protein_coding protein_coding MGP_AJ_T0092135.1 MGP_AJ_G0034697.1 mouse_genomes_project 9 41989780 42020802 - MGP_AJ_P0092135 Phldb1 protein_coding protein_coding MGP_AJ_T0092136.1 MGP_AJ_G0034697.1 mouse_genomes_project 9 41991104 42002265 - Phldb1 protein_coding retained_intron MGP_AJ_T0092137.1 MGP_AJ_G0034697.1 mouse_genomes_project 9 41998883 42000851 - Phldb1 protein_coding retained_intron MGP_AJ_T0092138.1 MGP_AJ_G0034697.1 mouse_genomes_project 9 42002153 42008528 - MGP_AJ_P0092138 Phldb1 protein_coding protein_coding MGP_AJ_T0092139.1 MGP_AJ_G0034697.1 mouse_genomes_project 9 42005381 42015376 - MGP_AJ_P0092139 Phldb1 protein_coding protein_coding MGP_AJ_T0092140.1 MGP_AJ_G0034697.1 mouse_genomes_project 9 42007992 42012847 - MGP_AJ_P0092140 Phldb1 protein_coding nonsense_mediated_decay MGP_AJ_T0092141.1 MGP_AJ_G0034697.1 mouse_genomes_project 9 42020545 42025885 - MGP_AJ_P0092141 Phldb1 protein_coding protein_coding MGP_AJ_T0092142.1 MGP_AJ_G0034697.1 mouse_genomes_project 9 42020715 42025848 - MGP_AJ_P0092142 Phldb1 protein_coding protein_coding MGP_AJ_T0092143.1 MGP_AJ_G0034697.1 mouse_genomes_project 9 42022753 42031837 - Phldb1 protein_coding retained_intron MGP_AJ_T0092144.1 MGP_AJ_G0034697.1 mouse_genomes_project 9 42030496 42030973 - Phldb1 protein_coding processed_transcript MGP_AJ_T0092347.1 MGP_AJ_G0034766.1 mouse_genomes_project 9 48018811 48044762 - MGP_AJ_P0092347 Dlat protein_coding protein_coding MGP_AJ_T0092348.1 MGP_AJ_G0034766.1 mouse_genomes_project 9 48020706 48029131 - Dlat protein_coding retained_intron MGP_AJ_T0092349.1 MGP_AJ_G0034766.1 mouse_genomes_project 9 48021634 48031172 - Dlat protein_coding processed_transcript MGP_AJ_T0092350.1 MGP_AJ_G0034766.1 mouse_genomes_project 9 48024092 48028832 - Dlat protein_coding retained_intron MGP_AJ_T0092351.1 MGP_AJ_G0034766.1 mouse_genomes_project 9 48024409 48032618 - Dlat protein_coding processed_transcript MGP_AJ_T0092352.1 MGP_AJ_G0034766.1 mouse_genomes_project 9 48028802 48034885 - Dlat protein_coding retained_intron MGP_AJ_T0094878.1 MGP_AJ_G0035316.1 mouse_genomes_project 9 107646501 107676553 - MGP_AJ_P0094878 Fbxw25 protein_coding protein_coding MGP_AJ_T0094491.1 MGP_AJ_G0035253.1 mouse_genomes_project 9 105839818 105853832 + MGP_AJ_P0094491 Camkv protein_coding protein_coding MGP_AJ_T0094492.1 MGP_AJ_G0035253.1 mouse_genomes_project 9 105840042 105853818 + Camkv protein_coding retained_intron MGP_AJ_T0094493.1 MGP_AJ_G0035253.1 mouse_genomes_project 9 105840052 105850336 + MGP_AJ_P0094493 Camkv protein_coding nonsense_mediated_decay MGP_AJ_T0094494.1 MGP_AJ_G0035253.1 mouse_genomes_project 9 105841444 105849685 + MGP_AJ_P0094494 Camkv protein_coding protein_coding MGP_AJ_T0094495.1 MGP_AJ_G0035253.1 mouse_genomes_project 9 105849406 105853824 + MGP_AJ_P0094495 Camkv protein_coding protein_coding MGP_AJ_T0016067.1 MGP_AJ_G0014162.1 mouse_genomes_project 9 46433865 46434558 - processed_pseudogene processed_pseudogene MGP_AJ_T0095300.1 MGP_AJ_G0035409.1 mouse_genomes_project 9 118183930 118197237 - MGP_AJ_P0095300 Csrnp1 protein_coding unknown_likely_coding MGP_AJ_T0011040.1 MGP_AJ_G0009162.1 mouse_genomes_project 9 16915296 16915363 + Gm26231 miRNA miRNA MGP_AJ_T0018553.1 MGP_AJ_G0015726.1 mouse_genomes_project 9 80900860 80902310 + Gm29054 processed_transcript TEC MGP_AJ_T0018554.1 MGP_AJ_G0015726.1 mouse_genomes_project 9 80900891 80902227 + Gm29054 processed_transcript antisense MGP_AJ_T0094877.1 MGP_AJ_G0035315.1 mouse_genomes_project 9 107594618 107676551 - MGP_AJ_P0094877 Fbxw24 protein_coding protein_coding MGP_AJ_T0094484.1 MGP_AJ_G0035250.1 mouse_genomes_project 9 105792269 105807259 + MGP_AJ_P0094484 Mon1a protein_coding protein_coding MGP_AJ_T0094485.1 MGP_AJ_G0035250.1 mouse_genomes_project 9 105792300 105807264 + MGP_AJ_P0094485 Mon1a protein_coding protein_coding MGP_AJ_T0005433.1 MGP_AJ_G0004602.1 mouse_genomes_project 9 42498543 42500708 + Gm17099 antisense antisense MGP_AJ_T0009276.1 MGP_AJ_G0007453.1 mouse_genomes_project 9 72495850 72538827 + Gm20649 lincRNA lincRNA MGP_AJ_T0093598.1 MGP_AJ_G0035083.1 mouse_genomes_project 9 84809759 84862472 + MGP_AJ_P0093598 Cyb5r4 protein_coding protein_coding MGP_AJ_T0093599.1 MGP_AJ_G0035083.1 mouse_genomes_project 9 84809832 84855350 + Cyb5r4 protein_coding processed_transcript MGP_AJ_T0093600.1 MGP_AJ_G0035083.1 mouse_genomes_project 9 84817240 84835202 + Cyb5r4 protein_coding retained_intron MGP_AJ_T0091627.1 MGP_AJ_G0034480.1 mouse_genomes_project 9 23794421 23837212 - MGP_AJ_P0091627 Gm1110 protein_coding protein_coding MGP_AJ_T0091821.1 MGP_AJ_G0034537.1 mouse_genomes_project 9 33917411 34114729 - MGP_AJ_P0091821 Pknox2 protein_coding protein_coding MGP_AJ_T0091822.1 MGP_AJ_G0034537.1 mouse_genomes_project 9 33917411 34178972 - MGP_AJ_P0091822 Pknox2 protein_coding protein_coding MGP_AJ_T0091823.1 MGP_AJ_G0034537.1 mouse_genomes_project 9 33917414 34178997 - MGP_AJ_P0091823 Pknox2 protein_coding protein_coding MGP_AJ_T0091824.1 MGP_AJ_G0034537.1 mouse_genomes_project 9 33918907 33997014 - MGP_AJ_P0091824 Pknox2 protein_coding nonsense_mediated_decay MGP_AJ_T0091825.1 MGP_AJ_G0034537.1 mouse_genomes_project 9 33919071 34114699 - Pknox2 protein_coding processed_transcript MGP_AJ_T0091826.1 MGP_AJ_G0034537.1 mouse_genomes_project 9 33949109 34114699 - Pknox2 protein_coding retained_intron MGP_AJ_T0091827.1 MGP_AJ_G0034537.1 mouse_genomes_project 9 33962270 34114699 - Pknox2 protein_coding retained_intron MGP_AJ_T0091828.1 MGP_AJ_G0034537.1 mouse_genomes_project 9 33964042 34114699 - MGP_AJ_P0091828 Pknox2 protein_coding protein_coding MGP_AJ_T0091829.1 MGP_AJ_G0034537.1 mouse_genomes_project 9 33964055 34169137 - MGP_AJ_P0091829 Pknox2 protein_coding protein_coding MGP_AJ_T0091830.1 MGP_AJ_G0034537.1 mouse_genomes_project 9 33964071 34179005 - MGP_AJ_P0091830 Pknox2 protein_coding protein_coding MGP_AJ_T0091831.1 MGP_AJ_G0034537.1 mouse_genomes_project 9 33982761 34177300 - MGP_AJ_P0091831 Pknox2 protein_coding protein_coding MGP_AJ_T0091832.1 MGP_AJ_G0034537.1 mouse_genomes_project 9 34016039 34178949 - Pknox2 protein_coding processed_transcript MGP_AJ_T0092621.1 MGP_AJ_G0034851.1 mouse_genomes_project 9 54946670 54975030 + MGP_AJ_P0092621 Scamp2 protein_coding protein_coding MGP_AJ_T0091761.1 MGP_AJ_G0034515.1 mouse_genomes_project 9 32504589 32513138 + Pus3 protein_coding retained_intron MGP_AJ_T0091762.1 MGP_AJ_G0034515.1 mouse_genomes_project 9 32505454 32513401 + MGP_AJ_P0091762 Pus3 protein_coding protein_coding MGP_AJ_T0091763.1 MGP_AJ_G0034515.1 mouse_genomes_project 9 32505460 32512839 + MGP_AJ_P0091763 Pus3 protein_coding protein_coding MGP_AJ_T0095445.1 MGP_AJ_G0035454.1 mouse_genomes_project 9 121344952 121351839 + MGP_AJ_P0095445 Clec3b protein_coding protein_coding MGP_AJ_T0091727.1 MGP_AJ_G0034509.1 mouse_genomes_project 9 32151408 32164514 + protein_coding processed_transcript MGP_AJ_T0091740.1 MGP_AJ_G0034509.1 mouse_genomes_project 9 32162262 32167044 + MGP_AJ_P0091740 protein_coding unknown_likely_coding MGP_AJ_T0091741.1 MGP_AJ_G0034509.1 mouse_genomes_project 9 32162871 32163829 + protein_coding retained_intron MGP_AJ_T0091742.1 MGP_AJ_G0034509.1 mouse_genomes_project 9 32165876 32196107 + MGP_AJ_P0091742 protein_coding protein_coding MGP_AJ_T0101579.1 MGP_AJ_G0039545.1 mouse_genomes_project 9 83543078 83543208 - Gm22830 snoRNA snoRNA MGP_AJ_T0016179.1 MGP_AJ_G0014274.1 mouse_genomes_project 9 109140078 109140431 - processed_pseudogene processed_pseudogene MGP_AJ_T0091930.1 MGP_AJ_G0034608.1 mouse_genomes_project 9 36406968 36419580 - MGP_AJ_P0091930 protein_coding protein_coding MGP_AJ_T0093778.1 MGP_AJ_G0035123.1 mouse_genomes_project 9 93976200 94098881 + MGP_AJ_P0093778 Tfdp2 protein_coding protein_coding MGP_AJ_T0093779.1 MGP_AJ_G0035123.1 mouse_genomes_project 9 93976231 94099898 + MGP_AJ_P0093779 Tfdp2 protein_coding protein_coding MGP_AJ_T0093780.1 MGP_AJ_G0035123.1 mouse_genomes_project 9 93976238 94098888 + MGP_AJ_P0093780 Tfdp2 protein_coding protein_coding MGP_AJ_T0093781.1 MGP_AJ_G0035123.1 mouse_genomes_project 9 93976263 94027792 + Tfdp2 protein_coding processed_transcript MGP_AJ_T0093782.1 MGP_AJ_G0035123.1 mouse_genomes_project 9 93982035 94075517 + MGP_AJ_P0093782 Tfdp2 protein_coding protein_coding MGP_AJ_T0093783.1 MGP_AJ_G0035123.1 mouse_genomes_project 9 94039824 94091503 + MGP_AJ_P0093783 Tfdp2 protein_coding protein_coding MGP_AJ_T0093784.1 MGP_AJ_G0035123.1 mouse_genomes_project 9 94039861 94068364 + MGP_AJ_P0093784 Tfdp2 protein_coding protein_coding MGP_AJ_T0093785.1 MGP_AJ_G0035123.1 mouse_genomes_project 9 94039878 94098884 + MGP_AJ_P0093785 Tfdp2 protein_coding protein_coding MGP_AJ_T0093786.1 MGP_AJ_G0035123.1 mouse_genomes_project 9 94040399 94099822 + MGP_AJ_P0093786 Tfdp2 protein_coding protein_coding MGP_AJ_T0093787.1 MGP_AJ_G0035123.1 mouse_genomes_project 9 94068968 94072069 + Tfdp2 protein_coding retained_intron MGP_AJ_T0093788.1 MGP_AJ_G0035123.1 mouse_genomes_project 9 94085965 94089116 + Tfdp2 protein_coding retained_intron MGP_AJ_T0093789.1 MGP_AJ_G0035123.1 mouse_genomes_project 9 94091486 94098820 + MGP_AJ_P0093789 Tfdp2 protein_coding protein_coding MGP_AJ_T0092850.1 MGP_AJ_G0034911.1 mouse_genomes_project 9 61110294 61149513 + MGP_AJ_P0092850 Aagab protein_coding protein_coding MGP_AJ_T0098490.1 MGP_AJ_G0036474.1 mouse_genomes_project 9 16053752 16054701 + pseudogene pseudogene MGP_AJ_T0009261.1 MGP_AJ_G0007441.1 mouse_genomes_project 9 60306384 60310895 + Gm26609 lincRNA lincRNA MGP_AJ_T0092331.1 MGP_AJ_G0034761.1 mouse_genomes_project 9 47958317 47965538 + MGP_AJ_P0092331 Il18 protein_coding protein_coding MGP_AJ_T0092332.1 MGP_AJ_G0034761.1 mouse_genomes_project 9 47958317 47965538 + MGP_AJ_P0092332 Il18 protein_coding protein_coding MGP_AJ_T0093677.1 MGP_AJ_G0035102.1 mouse_genomes_project 9 87953361 87990236 + MGP_AJ_P0093677 Adamts7 protein_coding protein_coding MGP_AJ_T0093678.1 MGP_AJ_G0035102.1 mouse_genomes_project 9 87953370 87998206 + MGP_AJ_P0093678 Adamts7 protein_coding protein_coding MGP_AJ_T0093679.1 MGP_AJ_G0035102.1 mouse_genomes_project 9 87953416 87990236 + MGP_AJ_P0093679 Adamts7 protein_coding nonsense_mediated_decay MGP_AJ_T0093680.1 MGP_AJ_G0035102.1 mouse_genomes_project 9 87953494 87990126 + MGP_AJ_P0093680 Adamts7 protein_coding protein_coding MGP_AJ_T0093681.1 MGP_AJ_G0035102.1 mouse_genomes_project 9 87953518 87990238 + MGP_AJ_P0093681 Adamts7 protein_coding protein_coding MGP_AJ_T0093682.1 MGP_AJ_G0035102.1 mouse_genomes_project 9 87978791 87981702 + Adamts7 protein_coding retained_intron MGP_AJ_T0093683.1 MGP_AJ_G0035102.1 mouse_genomes_project 9 87981120 87983624 + Adamts7 protein_coding processed_transcript MGP_AJ_T0093684.1 MGP_AJ_G0035102.1 mouse_genomes_project 9 87985264 87990233 + Adamts7 protein_coding retained_intron MGP_AJ_T0091513.1 MGP_AJ_G0034433.1 mouse_genomes_project 9 18419574 18441529 + MGP_AJ_P0091513 AB124611 protein_coding protein_coding MGP_AJ_T0091514.1 MGP_AJ_G0034433.1 mouse_genomes_project 9 18419599 18441522 + MGP_AJ_P0091514 AB124611 protein_coding protein_coding MGP_AJ_T0091515.1 MGP_AJ_G0034433.1 mouse_genomes_project 9 18419626 18441527 + MGP_AJ_P0091515 AB124611 protein_coding nonsense_mediated_decay MGP_AJ_T0011063.1 MGP_AJ_G0009185.1 mouse_genomes_project 9 49488779 49488870 - Gm27686 miRNA miRNA MGP_AJ_T0092120.1 MGP_AJ_G0034694.1 mouse_genomes_project 9 41804029 41818636 - MGP_AJ_P0092120 Cxcr5 protein_coding protein_coding MGP_AJ_T0092121.1 MGP_AJ_G0034694.1 mouse_genomes_project 9 41804029 41848956 - MGP_AJ_P0092121 Cxcr5 protein_coding protein_coding MGP_AJ_T0091467.1 MGP_AJ_G0034420.1 mouse_genomes_project 9 18020274 18031640 - MGP_AJ_P0091467 Cdc37 protein_coding protein_coding MGP_AJ_T0099111.1 MGP_AJ_G0037082.1 mouse_genomes_project 9 99984589 99987067 - Gm29388 sense_intronic sense_intronic MGP_AJ_T0094669.1 MGP_AJ_G0035281.1 mouse_genomes_project 9 106420406 106428635 + MGP_AJ_P0094669 Qars protein_coding protein_coding MGP_AJ_T0094670.1 MGP_AJ_G0035281.1 mouse_genomes_project 9 106420751 106423781 + Qars protein_coding retained_intron MGP_AJ_T0094671.1 MGP_AJ_G0035281.1 mouse_genomes_project 9 106420751 106424892 + Qars protein_coding retained_intron MGP_AJ_T0094672.1 MGP_AJ_G0035281.1 mouse_genomes_project 9 106420751 106423765 + Qars protein_coding retained_intron MGP_AJ_T0094673.1 MGP_AJ_G0035281.1 mouse_genomes_project 9 106420764 106428630 + MGP_AJ_P0094673 Qars protein_coding protein_coding MGP_AJ_T0094674.1 MGP_AJ_G0035281.1 mouse_genomes_project 9 106422172 106428630 + MGP_AJ_P0094674 Qars protein_coding protein_coding MGP_AJ_T0094675.1 MGP_AJ_G0035281.1 mouse_genomes_project 9 106424243 106426091 + Qars protein_coding retained_intron MGP_AJ_T0094676.1 MGP_AJ_G0035281.1 mouse_genomes_project 9 106424303 106425585 + Qars protein_coding retained_intron MGP_AJ_T0094677.1 MGP_AJ_G0035281.1 mouse_genomes_project 9 106425799 106426880 + Qars protein_coding retained_intron MGP_AJ_T0094678.1 MGP_AJ_G0035281.1 mouse_genomes_project 9 106425802 106427852 + MGP_AJ_P0094678 Qars protein_coding protein_coding MGP_AJ_T0094679.1 MGP_AJ_G0035281.1 mouse_genomes_project 9 106425823 106426657 + Qars protein_coding processed_transcript MGP_AJ_T0094680.1 MGP_AJ_G0035281.1 mouse_genomes_project 9 106426237 106426824 + Qars protein_coding retained_intron MGP_AJ_T0094681.1 MGP_AJ_G0035281.1 mouse_genomes_project 9 106426419 106427052 + Qars protein_coding retained_intron MGP_AJ_T0094682.1 MGP_AJ_G0035281.1 mouse_genomes_project 9 106426757 106428630 + MGP_AJ_P0094682 Qars protein_coding nonsense_mediated_decay MGP_AJ_T0094683.1 MGP_AJ_G0035281.1 mouse_genomes_project 9 106427441 106427889 + Qars protein_coding retained_intron MGP_AJ_T0094684.1 MGP_AJ_G0035281.1 mouse_genomes_project 9 106427444 106428623 + Qars protein_coding retained_intron MGP_AJ_T0094685.1 MGP_AJ_G0035281.1 mouse_genomes_project 9 106427512 106428630 + Qars protein_coding retained_intron MGP_AJ_T0016117.1 MGP_AJ_G0014212.1 mouse_genomes_project 9 83562466 83563274 - processed_pseudogene processed_pseudogene MGP_AJ_T0091271.1 MGP_AJ_G0034328.1 mouse_genomes_project 9 11395983 11405944 + MGP_AJ_P0091271 Cwc15 protein_coding protein_coding MGP_AJ_T0016096.1 MGP_AJ_G0014191.1 mouse_genomes_project 9 74350132 74350886 + processed_pseudogene processed_pseudogene MGP_AJ_T0100284.1 MGP_AJ_G0038250.1 mouse_genomes_project 9 68151904 68152011 - Gm23730 snRNA snRNA MGP_AJ_T0091956.1 MGP_AJ_G0034628.1 mouse_genomes_project 9 37035592 37036365 + MGP_AJ_P0091956 protein_coding protein_coding MGP_AJ_T0092169.1 MGP_AJ_G0034703.1 mouse_genomes_project 9 42224877 42232449 - MGP_AJ_P0092169 Atp5l protein_coding protein_coding MGP_AJ_T0091578.1 MGP_AJ_G0034463.1 mouse_genomes_project 9 19242534 19301831 - MGP_AJ_P0091578 Anln protein_coding protein_coding MGP_AJ_T0101549.1 MGP_AJ_G0039515.1 mouse_genomes_project 9 32095424 32095568 + Gm24262 snoRNA snoRNA MGP_AJ_T0002405.1 MGP_AJ_G0002314.1 mouse_genomes_project 9 87036307 87040391 + TEC TEC MGP_AJ_T0009266.1 MGP_AJ_G0007444.1 mouse_genomes_project 9 65817462 65817834 + Gm28195 lincRNA lincRNA MGP_AJ_T0002471.1 MGP_AJ_G0002380.1 mouse_genomes_project 9 109121563 109121976 - TEC TEC MGP_AJ_T0100262.1 MGP_AJ_G0038228.1 mouse_genomes_project 9 38588474 38588580 - Gm25401 snRNA snRNA MGP_AJ_T0092043.1 MGP_AJ_G0034669.1 mouse_genomes_project 9 41350264 41401472 - MGP_AJ_P0092043 protein_coding protein_coding MGP_AJ_T0092053.1 MGP_AJ_G0034669.1 mouse_genomes_project 9 41380484 41398089 - MGP_AJ_P0092053 protein_coding nonsense_mediated_decay MGP_AJ_T0092054.1 MGP_AJ_G0034669.1 mouse_genomes_project 9 41380496 41388720 - protein_coding processed_transcript MGP_AJ_T0092070.1 MGP_AJ_G0034669.1 mouse_genomes_project 9 41397006 41401476 - MGP_AJ_P0092070 protein_coding protein_coding MGP_AJ_T0005503.1 MGP_AJ_G0004645.1 mouse_genomes_project 9 93812374 93825949 - Gm28085 antisense antisense MGP_AJ_T0091267.1 MGP_AJ_G0034325.1 mouse_genomes_project 9 11171653 11221859 + MGP_AJ_P0091267 Sesn3 protein_coding protein_coding MGP_AJ_T0092040.1 MGP_AJ_G0034666.1 mouse_genomes_project 9 41023566 41086267 + MGP_AJ_P0092040 Nectin1 protein_coding protein_coding MGP_AJ_T0091220.1 MGP_AJ_G0034312.1 mouse_genomes_project 9 5211790 5228656 + MGP_AJ_P0091220 1700128F08Rik protein_coding protein_coding MGP_AJ_T0002363.1 MGP_AJ_G0002273.1 mouse_genomes_project 9 69472999 69476209 - TEC TEC MGP_AJ_T0100247.1 MGP_AJ_G0038213.1 mouse_genomes_project 9 240691 240795 + Gm23275 snRNA snRNA MGP_AJ_T0009257.1 MGP_AJ_G0007439.1 mouse_genomes_project 9 58226128 58253378 + 1700036A12Rik lincRNA lincRNA MGP_AJ_T0009258.1 MGP_AJ_G0007439.1 mouse_genomes_project 9 58252703 58253057 + 1700036A12Rik lincRNA lincRNA MGP_AJ_T0016066.1 MGP_AJ_G0014161.1 mouse_genomes_project 9 43180044 43181051 - processed_pseudogene processed_pseudogene MGP_AJ_T0091969.1 MGP_AJ_G0034641.1 mouse_genomes_project 9 37296525 37297470 - MGP_AJ_P0091969 Olfr984 protein_coding protein_coding MGP_AJ_T0095482.1 MGP_AJ_G0035468.1 mouse_genomes_project 9 122187928 122189388 - MGP_AJ_P0095482 Ccr1l1 protein_coding protein_coding MGP_AJ_T0091225.1 MGP_AJ_G0034315.1 mouse_genomes_project 9 5979329 5983312 + MGP_AJ_P0091225 Gm16485 protein_coding protein_coding MGP_AJ_T0093012.1 MGP_AJ_G0034956.1 mouse_genomes_project 9 64061763 64067903 - MGP_AJ_P0093012 Fbxl22 protein_coding protein_coding MGP_AJ_T0091777.1 MGP_AJ_G0034524.1 mouse_genomes_project 9 32742161 32744222 - MGP_AJ_P0091777 D730048I06Rik protein_coding protein_coding MGP_AJ_T0002453.1 MGP_AJ_G0002362.1 mouse_genomes_project 9 103983555 103986521 + TEC TEC MGP_AJ_T0002358.1 MGP_AJ_G0002268.1 mouse_genomes_project 9 32801854 32802927 + TEC TEC MGP_AJ_T0092777.1 MGP_AJ_G0034891.1 mouse_genomes_project 9 58202892 58221795 + MGP_AJ_P0092777 Larp6 protein_coding protein_coding MGP_AJ_T0009244.1 MGP_AJ_G0007428.1 mouse_genomes_project 9 44284132 44298007 + 2900052N01Rik lincRNA lincRNA MGP_AJ_T0009245.1 MGP_AJ_G0007428.1 mouse_genomes_project 9 44284242 44298007 + 2900052N01Rik lincRNA lincRNA MGP_AJ_T0009246.1 MGP_AJ_G0007428.1 mouse_genomes_project 9 44284266 44293198 + 2900052N01Rik lincRNA lincRNA MGP_AJ_T0093954.1 MGP_AJ_G0035162.1 mouse_genomes_project 9 98923104 98949166 + MGP_AJ_P0093954 Msl2 protein_coding protein_coding MGP_AJ_T0093955.1 MGP_AJ_G0035162.1 mouse_genomes_project 9 98923769 98952465 + MGP_AJ_P0093955 Msl2 protein_coding protein_coding MGP_AJ_T0091183.1 MGP_AJ_G0034298.1 mouse_genomes_project 9 4399012 4409808 + MGP_AJ_P0091183 protein_coding protein_coding MGP_AJ_T0092325.1 MGP_AJ_G0034757.1 mouse_genomes_project 9 47875542 47886612 + MGP_AJ_P0092325 Plet1 protein_coding protein_coding MGP_AJ_T0092326.1 MGP_AJ_G0034757.1 mouse_genomes_project 9 47875544 47883000 + MGP_AJ_P0092326 Plet1 protein_coding protein_coding MGP_AJ_T0002441.1 MGP_AJ_G0002350.1 mouse_genomes_project 9 100534723 100537546 - TEC TEC MGP_AJ_T0011037.1 MGP_AJ_G0009159.1 mouse_genomes_project 9 12228431 12228490 + Mir7650 miRNA miRNA MGP_AJ_T0094185.1 MGP_AJ_G0035206.1 mouse_genomes_project 9 104177245 104245577 + MGP_AJ_P0094185 Poc1a protein_coding protein_coding MGP_AJ_T0094186.1 MGP_AJ_G0035206.1 mouse_genomes_project 9 104177564 104245590 + MGP_AJ_P0094186 Poc1a protein_coding protein_coding MGP_AJ_T0094187.1 MGP_AJ_G0035206.1 mouse_genomes_project 9 104187035 104246393 + Poc1a protein_coding processed_transcript MGP_AJ_T0094188.1 MGP_AJ_G0035206.1 mouse_genomes_project 9 104196928 104245575 + Poc1a protein_coding processed_transcript MGP_AJ_T0094189.1 MGP_AJ_G0035206.1 mouse_genomes_project 9 104223645 104245576 + Poc1a protein_coding processed_transcript MGP_AJ_T0002406.1 MGP_AJ_G0002315.1 mouse_genomes_project 9 87036971 87040391 + TEC TEC MGP_AJ_T0095405.1 MGP_AJ_G0035440.1 mouse_genomes_project 9 120387714 120505500 - MGP_AJ_P0095405 Ano10 protein_coding protein_coding MGP_AJ_T0091728.1 MGP_AJ_G0034510.1 mouse_genomes_project 9 32155175 32161910 - MGP_AJ_P0091728 Foxred1 protein_coding nonsense_mediated_decay MGP_AJ_T0091729.1 MGP_AJ_G0034510.1 mouse_genomes_project 9 32155177 32161928 - Foxred1 protein_coding retained_intron MGP_AJ_T0091730.1 MGP_AJ_G0034510.1 mouse_genomes_project 9 32155177 32161944 - Foxred1 protein_coding retained_intron MGP_AJ_T0091731.1 MGP_AJ_G0034510.1 mouse_genomes_project 9 32155177 32162029 - MGP_AJ_P0091731 Foxred1 protein_coding protein_coding MGP_AJ_T0091732.1 MGP_AJ_G0034510.1 mouse_genomes_project 9 32155177 32161954 - MGP_AJ_P0091732 Foxred1 protein_coding protein_coding MGP_AJ_T0091733.1 MGP_AJ_G0034510.1 mouse_genomes_project 9 32155177 32161975 - MGP_AJ_P0091733 Foxred1 protein_coding nonsense_mediated_decay MGP_AJ_T0091734.1 MGP_AJ_G0034510.1 mouse_genomes_project 9 32155834 32156891 - Foxred1 protein_coding retained_intron MGP_AJ_T0091735.1 MGP_AJ_G0034510.1 mouse_genomes_project 9 32156153 32157203 - MGP_AJ_P0091735 Foxred1 protein_coding protein_coding MGP_AJ_T0091736.1 MGP_AJ_G0034510.1 mouse_genomes_project 9 32157055 32161920 - Foxred1 protein_coding retained_intron MGP_AJ_T0091737.1 MGP_AJ_G0034510.1 mouse_genomes_project 9 32157191 32161970 - MGP_AJ_P0091737 Foxred1 protein_coding protein_coding MGP_AJ_T0091738.1 MGP_AJ_G0034510.1 mouse_genomes_project 9 32158506 32161896 - MGP_AJ_P0091738 Foxred1 protein_coding nonsense_mediated_decay MGP_AJ_T0091739.1 MGP_AJ_G0034510.1 mouse_genomes_project 9 32158516 32161871 - MGP_AJ_P0091739 Foxred1 protein_coding nonsense_mediated_decay MGP_AJ_T0095115.1 MGP_AJ_G0035355.1 mouse_genomes_project 9 109513961 109563964 + MGP_AJ_P0095115 Dclk3 protein_coding protein_coding MGP_AJ_T0009319.1 MGP_AJ_G0007486.1 mouse_genomes_project 9 97175852 97177469 + Gm28087 lincRNA lincRNA MGP_AJ_T0093405.1 MGP_AJ_G0035042.1 mouse_genomes_project 9 76009953 76020825 + MGP_AJ_P0093405 protein_coding protein_coding MGP_AJ_T0091593.1 MGP_AJ_G0034468.1 mouse_genomes_project 9 20145789 20408094 + MGP_AJ_P0091593 Bmper protein_coding protein_coding MGP_AJ_T0101565.1 MGP_AJ_G0039531.1 mouse_genomes_project 9 61693975 61694074 + Gm23136 snoRNA snoRNA MGP_AJ_T0091557.1 MGP_AJ_G0034452.1 mouse_genomes_project 9 18919095 18955059 - MGP_AJ_P0091557 Elavl3 protein_coding protein_coding MGP_AJ_T0091558.1 MGP_AJ_G0034452.1 mouse_genomes_project 9 18926904 18939922 - MGP_AJ_P0091558 Elavl3 protein_coding unknown_likely_coding MGP_AJ_T0009302.1 MGP_AJ_G0007474.1 mouse_genomes_project 9 89209530 89367933 + Gm29478 lincRNA lincRNA MGP_AJ_T0002431.1 MGP_AJ_G0002340.1 mouse_genomes_project 9 98961393 98963427 + TEC TEC MGP_AJ_T0009360.1 MGP_AJ_G0007518.1 mouse_genomes_project 9 120768780 120871790 + 9530059O14Rik lincRNA lincRNA MGP_AJ_T0009361.1 MGP_AJ_G0007518.1 mouse_genomes_project 9 120768784 120776921 + 9530059O14Rik lincRNA lincRNA MGP_AJ_T0009362.1 MGP_AJ_G0007518.1 mouse_genomes_project 9 120768785 120872421 + 9530059O14Rik lincRNA lincRNA MGP_AJ_T0092425.1 MGP_AJ_G0034785.1 mouse_genomes_project 9 49431071 49473816 + MGP_AJ_P0092425 Rdx protein_coding protein_coding MGP_AJ_T0092426.1 MGP_AJ_G0034785.1 mouse_genomes_project 9 49431860 49473816 + MGP_AJ_P0092426 Rdx protein_coding protein_coding MGP_AJ_T0092427.1 MGP_AJ_G0034785.1 mouse_genomes_project 9 49431860 49459004 + MGP_AJ_P0092427 Rdx protein_coding protein_coding MGP_AJ_T0092428.1 MGP_AJ_G0034785.1 mouse_genomes_project 9 49464820 49470322 + MGP_AJ_P0092428 Rdx protein_coding unknown_likely_coding MGP_AJ_T0091380.1 MGP_AJ_G0034382.1 mouse_genomes_project 9 16736660 16740785 - MGP_AJ_P0091380 Olfr860 protein_coding protein_coding MGP_AJ_T0002464.1 MGP_AJ_G0002373.1 mouse_genomes_project 9 107739901 107741481 + TEC TEC MGP_AJ_T0095181.1 MGP_AJ_G0035372.1 mouse_genomes_project 9 112852143 112888822 + MGP_AJ_P0095181 Dync1li1 protein_coding protein_coding MGP_AJ_T0011105.1 MGP_AJ_G0009227.1 mouse_genomes_project 9 116204355 116204432 + Gm22008 miRNA miRNA MGP_AJ_T0016143.1 MGP_AJ_G0014238.1 mouse_genomes_project 9 93397951 93398393 - processed_pseudogene processed_pseudogene MGP_AJ_T0092952.1 MGP_AJ_G0034944.1 mouse_genomes_project 9 63175450 63209404 + MGP_AJ_P0092952 Rbpms2 protein_coding protein_coding MGP_AJ_T0092953.1 MGP_AJ_G0034944.1 mouse_genomes_project 9 63176380 63209381 + MGP_AJ_P0092953 Rbpms2 protein_coding protein_coding MGP_AJ_T0095395.1 MGP_AJ_G0035439.1 mouse_genomes_project 9 120328452 120348346 + MGP_AJ_P0095395 Snrk protein_coding protein_coding MGP_AJ_T0095396.1 MGP_AJ_G0035439.1 mouse_genomes_project 9 120328479 120348454 + MGP_AJ_P0095396 Snrk protein_coding protein_coding MGP_AJ_T0095397.1 MGP_AJ_G0035439.1 mouse_genomes_project 9 120328508 120381538 + MGP_AJ_P0095397 Snrk protein_coding protein_coding MGP_AJ_T0095398.1 MGP_AJ_G0035439.1 mouse_genomes_project 9 120328516 120377614 + MGP_AJ_P0095398 Snrk protein_coding protein_coding MGP_AJ_T0095399.1 MGP_AJ_G0035439.1 mouse_genomes_project 9 120328528 120348301 + MGP_AJ_P0095399 Snrk protein_coding protein_coding MGP_AJ_T0095400.1 MGP_AJ_G0035439.1 mouse_genomes_project 9 120328544 120379903 + MGP_AJ_P0095400 Snrk protein_coding protein_coding MGP_AJ_T0095401.1 MGP_AJ_G0035439.1 mouse_genomes_project 9 120328921 120348146 + Snrk protein_coding processed_transcript MGP_AJ_T0095402.1 MGP_AJ_G0035439.1 mouse_genomes_project 9 120371295 120377616 + Snrk protein_coding retained_intron MGP_AJ_T0095403.1 MGP_AJ_G0035439.1 mouse_genomes_project 9 120375093 120377715 + Snrk protein_coding retained_intron MGP_AJ_T0095404.1 MGP_AJ_G0035439.1 mouse_genomes_project 9 120377968 120379335 + Snrk protein_coding processed_transcript MGP_AJ_T0094626.1 MGP_AJ_G0035276.1 mouse_genomes_project 9 106347207 106358596 + MGP_AJ_P0094626 BC048562 protein_coding protein_coding MGP_AJ_T0094627.1 MGP_AJ_G0035276.1 mouse_genomes_project 9 106347219 106358396 + BC048562 protein_coding processed_transcript MGP_AJ_T0091783.1 MGP_AJ_G0034530.1 mouse_genomes_project 9 33610231 33611589 - MGP_AJ_P0091783 Gm17689 protein_coding protein_coding MGP_AJ_T0093418.1 MGP_AJ_G0035046.1 mouse_genomes_project 9 76099934 76117373 - MGP_AJ_P0093418 Gsta2 protein_coding protein_coding MGP_AJ_T0093383.1 MGP_AJ_G0035035.1 mouse_genomes_project 9 75475128 75515443 + MGP_AJ_P0093383 Gclc protein_coding protein_coding MGP_AJ_T0099114.1 MGP_AJ_G0037085.1 mouse_genomes_project 9 113358336 113361741 + Gm27002 sense_intronic sense_intronic MGP_AJ_T0092992.1 MGP_AJ_G0034952.1 mouse_genomes_project 9 63636771 63674261 - MGP_AJ_P0092992 Snx1 protein_coding protein_coding MGP_AJ_T0092993.1 MGP_AJ_G0034952.1 mouse_genomes_project 9 63637762 63639986 - Snx1 protein_coding retained_intron MGP_AJ_T0092994.1 MGP_AJ_G0034952.1 mouse_genomes_project 9 63642825 63645220 - Snx1 protein_coding retained_intron MGP_AJ_T0092995.1 MGP_AJ_G0034952.1 mouse_genomes_project 9 63645187 63650323 - Snx1 protein_coding retained_intron MGP_AJ_T0092996.1 MGP_AJ_G0034952.1 mouse_genomes_project 9 63646034 63675964 - MGP_AJ_P0092996 Snx1 protein_coding protein_coding MGP_AJ_T0092997.1 MGP_AJ_G0034952.1 mouse_genomes_project 9 63653715 63654968 - Snx1 protein_coding retained_intron MGP_AJ_T0092998.1 MGP_AJ_G0034952.1 mouse_genomes_project 9 63658398 63674172 - Snx1 protein_coding retained_intron MGP_AJ_T0101873.1 MGP_AJ_G0039752.1 mouse_genomes_project 9 11748686 11751914 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0093849.1 MGP_AJ_G0035136.1 mouse_genomes_project 9 96220622 96244183 + MGP_AJ_P0093849 Rbp1 protein_coding protein_coding MGP_AJ_T0016093.1 MGP_AJ_G0014188.1 mouse_genomes_project 9 72747398 72747941 - processed_pseudogene processed_pseudogene MGP_AJ_T0091185.1 MGP_AJ_G0034300.1 mouse_genomes_project 9 4418350 4433872 + MGP_AJ_P0091185 protein_coding protein_coding MGP_AJ_T0092008.1 MGP_AJ_G0034654.1 mouse_genomes_project 9 38247036 38396576 - MGP_AJ_P0092008 Ubash3b protein_coding protein_coding MGP_AJ_T0092009.1 MGP_AJ_G0034654.1 mouse_genomes_project 9 38286144 38400671 - Ubash3b protein_coding processed_transcript MGP_AJ_T0092010.1 MGP_AJ_G0034654.1 mouse_genomes_project 9 38286172 38396652 - MGP_AJ_P0092010 Ubash3b protein_coding protein_coding MGP_AJ_T0092011.1 MGP_AJ_G0034654.1 mouse_genomes_project 9 38286230 38400839 - MGP_AJ_P0092011 Ubash3b protein_coding protein_coding MGP_AJ_T0092012.1 MGP_AJ_G0034654.1 mouse_genomes_project 9 38398976 38400848 - Ubash3b protein_coding processed_transcript MGP_AJ_T0018591.1 MGP_AJ_G0015740.1 mouse_genomes_project 9 112519606 112531843 + processed_transcript processed_transcript MGP_AJ_T0018592.1 MGP_AJ_G0015740.1 mouse_genomes_project 9 112519627 112531060 + processed_transcript processed_transcript MGP_AJ_T0018593.1 MGP_AJ_G0015740.1 mouse_genomes_project 9 112519719 112523787 + processed_transcript processed_transcript MGP_AJ_T0009286.1 MGP_AJ_G0007462.1 mouse_genomes_project 9 79194364 79199909 + Gm27226 lincRNA lincRNA MGP_AJ_T0005532.1 MGP_AJ_G0004668.1 mouse_genomes_project 9 105444556 105447735 - Gm34106 antisense antisense MGP_AJ_T0101574.1 MGP_AJ_G0039540.1 mouse_genomes_project 9 72429921 72430064 + Gm22315 snoRNA snoRNA MGP_AJ_T0094311.1 MGP_AJ_G0035229.1 mouse_genomes_project 9 105222674 105233764 - MGP_AJ_P0094311 Hemk1 protein_coding protein_coding MGP_AJ_T0094312.1 MGP_AJ_G0035229.1 mouse_genomes_project 9 105223282 105233732 - Hemk1 protein_coding retained_intron MGP_AJ_T0094313.1 MGP_AJ_G0035229.1 mouse_genomes_project 9 105223300 105232073 - Hemk1 protein_coding processed_transcript MGP_AJ_T0094314.1 MGP_AJ_G0035229.1 mouse_genomes_project 9 105223302 105225043 - Hemk1 protein_coding retained_intron MGP_AJ_T0094315.1 MGP_AJ_G0035229.1 mouse_genomes_project 9 105223581 105233747 - MGP_AJ_P0094315 Hemk1 protein_coding protein_coding MGP_AJ_T0094316.1 MGP_AJ_G0035229.1 mouse_genomes_project 9 105224950 105226242 - Hemk1 protein_coding retained_intron MGP_AJ_T0094317.1 MGP_AJ_G0035229.1 mouse_genomes_project 9 105230555 105233716 - Hemk1 protein_coding retained_intron MGP_AJ_T0002460.1 MGP_AJ_G0002369.1 mouse_genomes_project 9 106443361 106445295 + TEC TEC MGP_AJ_T0094249.1 MGP_AJ_G0035216.1 mouse_genomes_project 9 104391121 104433026 - Iqcf3 protein_coding processed_transcript MGP_AJ_T0094251.1 MGP_AJ_G0035216.1 mouse_genomes_project 9 104431722 104451823 - MGP_AJ_P0094251 Iqcf3 protein_coding protein_coding MGP_AJ_T0094252.1 MGP_AJ_G0035216.1 mouse_genomes_project 9 104432131 104451821 - MGP_AJ_P0094252 Iqcf3 protein_coding protein_coding MGP_AJ_T0094253.1 MGP_AJ_G0035216.1 mouse_genomes_project 9 104441469 104451791 - MGP_AJ_P0094253 Iqcf3 protein_coding protein_coding MGP_AJ_T0094254.1 MGP_AJ_G0035216.1 mouse_genomes_project 9 104443086 104451791 - MGP_AJ_P0094254 Iqcf3 protein_coding protein_coding MGP_AJ_T0095421.1 MGP_AJ_G0035447.1 mouse_genomes_project 9 121112320 121120273 + MGP_AJ_P0095421 Zfp105 protein_coding protein_coding MGP_AJ_T0095422.1 MGP_AJ_G0035447.1 mouse_genomes_project 9 121112347 121118923 + MGP_AJ_P0095422 Zfp105 protein_coding protein_coding MGP_AJ_T0095039.1 MGP_AJ_G0035339.1 mouse_genomes_project 9 108890406 108895561 + MGP_AJ_P0095039 Prss43 protein_coding protein_coding MGP_AJ_T0095325.1 MGP_AJ_G0035420.1 mouse_genomes_project 9 119153291 119175204 + MGP_AJ_P0095325 Ctnnb1 protein_coding protein_coding MGP_AJ_T0095326.1 MGP_AJ_G0035420.1 mouse_genomes_project 9 119157501 119185076 + MGP_AJ_P0095326 Ctnnb1 protein_coding protein_coding MGP_AJ_T0095327.1 MGP_AJ_G0035420.1 mouse_genomes_project 9 119157576 119185075 + MGP_AJ_P0095327 Ctnnb1 protein_coding nonsense_mediated_decay MGP_AJ_T0095328.1 MGP_AJ_G0035420.1 mouse_genomes_project 9 119157587 119181016 + Ctnnb1 protein_coding retained_intron MGP_AJ_T0095329.1 MGP_AJ_G0035420.1 mouse_genomes_project 9 119157679 119185075 + MGP_AJ_P0095329 Ctnnb1 protein_coding protein_coding MGP_AJ_T0095330.1 MGP_AJ_G0035420.1 mouse_genomes_project 9 119157724 119176279 + MGP_AJ_P0095330 Ctnnb1 protein_coding nonsense_mediated_decay MGP_AJ_T0095331.1 MGP_AJ_G0035420.1 mouse_genomes_project 9 119157919 119175862 + MGP_AJ_P0095331 Ctnnb1 protein_coding protein_coding MGP_AJ_T0095332.1 MGP_AJ_G0035420.1 mouse_genomes_project 9 119174789 119184086 + MGP_AJ_P0095332 Ctnnb1 protein_coding nonsense_mediated_decay MGP_AJ_T0095333.1 MGP_AJ_G0035420.1 mouse_genomes_project 9 119175657 119179968 + MGP_AJ_P0095333 Ctnnb1 protein_coding nonsense_mediated_decay MGP_AJ_T0095334.1 MGP_AJ_G0035420.1 mouse_genomes_project 9 119179693 119180410 + Ctnnb1 protein_coding processed_transcript MGP_AJ_T0095335.1 MGP_AJ_G0035420.1 mouse_genomes_project 9 119179865 119182208 + Ctnnb1 protein_coding processed_transcript MGP_AJ_T0095336.1 MGP_AJ_G0035420.1 mouse_genomes_project 9 119180025 119182103 + MGP_AJ_P0095336 Ctnnb1 protein_coding protein_coding MGP_AJ_T0095337.1 MGP_AJ_G0035420.1 mouse_genomes_project 9 119180482 119183594 + MGP_AJ_P0095337 Ctnnb1 protein_coding protein_coding MGP_AJ_T0095338.1 MGP_AJ_G0035420.1 mouse_genomes_project 9 119181435 119182393 + Ctnnb1 protein_coding retained_intron MGP_AJ_T0100310.1 MGP_AJ_G0038276.1 mouse_genomes_project 9 106661600 106661707 - Gm24259 snRNA snRNA MGP_AJ_T0002390.1 MGP_AJ_G0002300.1 mouse_genomes_project 9 75014247 75015257 - TEC TEC MGP_AJ_T0092781.1 MGP_AJ_G0034894.1 mouse_genomes_project 9 58858504 58904677 + MGP_AJ_P0092781 Tle3 protein_coding protein_coding MGP_AJ_T0092782.1 MGP_AJ_G0034894.1 mouse_genomes_project 9 58858521 58904085 + MGP_AJ_P0092782 Tle3 protein_coding protein_coding MGP_AJ_T0092783.1 MGP_AJ_G0034894.1 mouse_genomes_project 9 58858998 58904667 + MGP_AJ_P0092783 Tle3 protein_coding protein_coding MGP_AJ_T0092784.1 MGP_AJ_G0034894.1 mouse_genomes_project 9 58859521 58895541 + MGP_AJ_P0092784 Tle3 protein_coding protein_coding MGP_AJ_T0092785.1 MGP_AJ_G0034894.1 mouse_genomes_project 9 58859525 58904017 + MGP_AJ_P0092785 Tle3 protein_coding protein_coding MGP_AJ_T0092786.1 MGP_AJ_G0034894.1 mouse_genomes_project 9 58859556 58893615 + MGP_AJ_P0092786 Tle3 protein_coding protein_coding MGP_AJ_T0092787.1 MGP_AJ_G0034894.1 mouse_genomes_project 9 58859578 58902896 + MGP_AJ_P0092787 Tle3 protein_coding protein_coding MGP_AJ_T0092788.1 MGP_AJ_G0034894.1 mouse_genomes_project 9 58859578 58902896 + MGP_AJ_P0092788 Tle3 protein_coding protein_coding MGP_AJ_T0092789.1 MGP_AJ_G0034894.1 mouse_genomes_project 9 58859578 58902896 + MGP_AJ_P0092789 Tle3 protein_coding protein_coding MGP_AJ_T0092790.1 MGP_AJ_G0034894.1 mouse_genomes_project 9 58859622 58888057 + MGP_AJ_P0092790 Tle3 protein_coding protein_coding MGP_AJ_T0092791.1 MGP_AJ_G0034894.1 mouse_genomes_project 9 58859654 58903156 + MGP_AJ_P0092791 Tle3 protein_coding protein_coding MGP_AJ_T0092792.1 MGP_AJ_G0034894.1 mouse_genomes_project 9 58860470 58880802 + MGP_AJ_P0092792 Tle3 protein_coding protein_coding MGP_AJ_T0092793.1 MGP_AJ_G0034894.1 mouse_genomes_project 9 58861662 58903156 + MGP_AJ_P0092793 Tle3 protein_coding protein_coding MGP_AJ_T0092794.1 MGP_AJ_G0034894.1 mouse_genomes_project 9 58888023 58896310 + Tle3 protein_coding processed_transcript MGP_AJ_T0092795.1 MGP_AJ_G0034894.1 mouse_genomes_project 9 58888625 58904015 + Tle3 protein_coding retained_intron MGP_AJ_T0092796.1 MGP_AJ_G0034894.1 mouse_genomes_project 9 58896112 58904599 + Tle3 protein_coding processed_transcript MGP_AJ_T0091939.1 MGP_AJ_G0034617.1 mouse_genomes_project 9 36762078 36763133 - MGP_AJ_P0091939 Olfr959 protein_coding protein_coding MGP_AJ_T0011062.1 MGP_AJ_G0009184.1 mouse_genomes_project 9 48499055 48499139 - Mir34b miRNA miRNA MGP_AJ_T0094785.1 MGP_AJ_G0035295.1 mouse_genomes_project 9 106792157 106793102 + MGP_AJ_P0094785 Tmem89 protein_coding protein_coding MGP_AJ_T0094786.1 MGP_AJ_G0035295.1 mouse_genomes_project 9 106792157 106793102 + MGP_AJ_P0094786 Tmem89 protein_coding protein_coding MGP_AJ_T0100294.1 MGP_AJ_G0038260.1 mouse_genomes_project 9 82403848 82404012 + Gm26126 snRNA snRNA MGP_AJ_T0092061.1 MGP_AJ_G0034672.1 mouse_genomes_project 9 41392876 41394819 + MGP_AJ_P0092061 C1qtnf5 protein_coding protein_coding MGP_AJ_T0092062.1 MGP_AJ_G0034672.1 mouse_genomes_project 9 41392885 41394817 + MGP_AJ_P0092062 C1qtnf5 protein_coding protein_coding MGP_AJ_T0092063.1 MGP_AJ_G0034672.1 mouse_genomes_project 9 41392905 41394816 + MGP_AJ_P0092063 C1qtnf5 protein_coding protein_coding MGP_AJ_T0092064.1 MGP_AJ_G0034672.1 mouse_genomes_project 9 41392940 41394125 + MGP_AJ_P0092064 C1qtnf5 protein_coding protein_coding MGP_AJ_T0092065.1 MGP_AJ_G0034672.1 mouse_genomes_project 9 41392945 41394816 + MGP_AJ_P0092065 C1qtnf5 protein_coding protein_coding MGP_AJ_T0092066.1 MGP_AJ_G0034672.1 mouse_genomes_project 9 41392952 41393539 + MGP_AJ_P0092066 C1qtnf5 protein_coding protein_coding MGP_AJ_T0092067.1 MGP_AJ_G0034672.1 mouse_genomes_project 9 41393006 41394404 + MGP_AJ_P0092067 C1qtnf5 protein_coding protein_coding MGP_AJ_T0092068.1 MGP_AJ_G0034672.1 mouse_genomes_project 9 41393146 41394176 + MGP_AJ_P0092068 C1qtnf5 protein_coding protein_coding MGP_AJ_T0100312.1 MGP_AJ_G0038278.1 mouse_genomes_project 9 112759983 112760088 - Gm23232 snRNA snRNA MGP_AJ_T0091357.1 MGP_AJ_G0034359.1 mouse_genomes_project 9 15722442 15723381 - MGP_AJ_P0091357 Olfr828 protein_coding protein_coding MGP_AJ_T0002442.1 MGP_AJ_G0002351.1 mouse_genomes_project 9 100953750 100956224 + TEC TEC MGP_AJ_T0093764.1 MGP_AJ_G0035121.1 mouse_genomes_project 9 93740190 93837714 + MGP_AJ_P0093764 Xrn1 protein_coding protein_coding MGP_AJ_T0093765.1 MGP_AJ_G0035121.1 mouse_genomes_project 9 93740197 93842477 + MGP_AJ_P0093765 Xrn1 protein_coding protein_coding MGP_AJ_T0093766.1 MGP_AJ_G0035121.1 mouse_genomes_project 9 93740223 93753199 + MGP_AJ_P0093766 Xrn1 protein_coding protein_coding MGP_AJ_T0093767.1 MGP_AJ_G0035121.1 mouse_genomes_project 9 93740262 93785794 + Xrn1 protein_coding retained_intron MGP_AJ_T0093768.1 MGP_AJ_G0035121.1 mouse_genomes_project 9 93740289 93837714 + Xrn1 protein_coding retained_intron MGP_AJ_T0093769.1 MGP_AJ_G0035121.1 mouse_genomes_project 9 93740292 93797263 + MGP_AJ_P0093769 Xrn1 protein_coding protein_coding MGP_AJ_T0093770.1 MGP_AJ_G0035121.1 mouse_genomes_project 9 93757167 93760782 + Xrn1 protein_coding retained_intron MGP_AJ_T0093771.1 MGP_AJ_G0035121.1 mouse_genomes_project 9 93758939 93763756 + Xrn1 protein_coding retained_intron MGP_AJ_T0093772.1 MGP_AJ_G0035121.1 mouse_genomes_project 9 93802860 93805906 + Xrn1 protein_coding retained_intron MGP_AJ_T0100258.1 MGP_AJ_G0038224.1 mouse_genomes_project 9 27241500 27241607 - Gm26435 snRNA snRNA MGP_AJ_T0002446.1 MGP_AJ_G0002355.1 mouse_genomes_project 9 101442644 101444232 - TEC TEC MGP_AJ_T0094866.1 MGP_AJ_G0035311.1 mouse_genomes_project 9 107296940 107739653 - MGP_AJ_P0094866 protein_coding protein_coding MGP_AJ_T0094867.1 MGP_AJ_G0035311.1 mouse_genomes_project 9 107297282 107739653 - MGP_AJ_P0094867 protein_coding protein_coding MGP_AJ_T0094868.1 MGP_AJ_G0035311.1 mouse_genomes_project 9 107297285 107739648 - MGP_AJ_P0094868 protein_coding protein_coding MGP_AJ_T0094872.1 MGP_AJ_G0035311.1 mouse_genomes_project 9 107389849 107739637 - MGP_AJ_P0094872 protein_coding protein_coding MGP_AJ_T0095351.1 MGP_AJ_G0035424.1 mouse_genomes_project 9 119782023 119847343 - MGP_AJ_P0095351 Lyzl4 protein_coding protein_coding MGP_AJ_T0095352.1 MGP_AJ_G0035424.1 mouse_genomes_project 9 119782029 119847874 - MGP_AJ_P0095352 Lyzl4 protein_coding protein_coding MGP_AJ_T0095353.1 MGP_AJ_G0035424.1 mouse_genomes_project 9 119788267 119847303 - MGP_AJ_P0095353 Lyzl4 protein_coding protein_coding MGP_AJ_T0005477.1 MGP_AJ_G0004630.1 mouse_genomes_project 9 74005825 74007095 + Gm27234 antisense antisense MGP_AJ_T0092148.1 MGP_AJ_G0034699.1 mouse_genomes_project 9 42083807 42103558 + MGP_AJ_P0092148 Ift46 protein_coding protein_coding MGP_AJ_T0092149.1 MGP_AJ_G0034699.1 mouse_genomes_project 9 42083832 42092891 + MGP_AJ_P0092149 Ift46 protein_coding protein_coding MGP_AJ_T0092150.1 MGP_AJ_G0034699.1 mouse_genomes_project 9 42083923 42097067 + Ift46 protein_coding processed_transcript MGP_AJ_T0092151.1 MGP_AJ_G0034699.1 mouse_genomes_project 9 42083926 42085288 + Ift46 protein_coding processed_transcript MGP_AJ_T0092152.1 MGP_AJ_G0034699.1 mouse_genomes_project 9 42083972 42094804 + MGP_AJ_P0092152 Ift46 protein_coding protein_coding MGP_AJ_T0092153.1 MGP_AJ_G0034699.1 mouse_genomes_project 9 42084135 42092883 + MGP_AJ_P0092153 Ift46 protein_coding protein_coding MGP_AJ_T0092154.1 MGP_AJ_G0034699.1 mouse_genomes_project 9 42084572 42092952 + MGP_AJ_P0092154 Ift46 protein_coding protein_coding MGP_AJ_T0092155.1 MGP_AJ_G0034699.1 mouse_genomes_project 9 42087263 42101739 + MGP_AJ_P0092155 Ift46 protein_coding protein_coding MGP_AJ_T0092156.1 MGP_AJ_G0034699.1 mouse_genomes_project 9 42088644 42092961 + Ift46 protein_coding retained_intron MGP_AJ_T0092157.1 MGP_AJ_G0034699.1 mouse_genomes_project 9 42095057 42098307 + Ift46 protein_coding processed_transcript MGP_AJ_T0092158.1 MGP_AJ_G0034699.1 mouse_genomes_project 9 42100287 42101580 + Ift46 protein_coding retained_intron MGP_AJ_T0091175.1 MGP_AJ_G0034296.1 mouse_genomes_project 9 4215917 4226737 + MGP_AJ_P0091175 Mmp13 protein_coding protein_coding MGP_AJ_T0091480.1 MGP_AJ_G0034424.1 mouse_genomes_project 9 18152272 18161312 + MGP_AJ_P0091480 Atg4d protein_coding protein_coding MGP_AJ_T0101545.1 MGP_AJ_G0039511.1 mouse_genomes_project 9 21895223 21895357 + Gm23893 snoRNA snoRNA MGP_AJ_T0100299.1 MGP_AJ_G0038265.1 mouse_genomes_project 9 89646054 89646159 + Gm26101 snRNA snRNA MGP_AJ_T0094882.1 MGP_AJ_G0035318.1 mouse_genomes_project 9 107880812 107890886 + MGP_AJ_P0094882 Nme6 protein_coding protein_coding MGP_AJ_T0094883.1 MGP_AJ_G0035318.1 mouse_genomes_project 9 107880834 107881653 + Nme6 protein_coding retained_intron MGP_AJ_T0094884.1 MGP_AJ_G0035318.1 mouse_genomes_project 9 107880834 107891232 + Nme6 protein_coding processed_transcript MGP_AJ_T0094885.1 MGP_AJ_G0035318.1 mouse_genomes_project 9 107880844 107890395 + MGP_AJ_P0094885 Nme6 protein_coding protein_coding MGP_AJ_T0094886.1 MGP_AJ_G0035318.1 mouse_genomes_project 9 107880849 107891016 + Nme6 protein_coding processed_transcript MGP_AJ_T0094887.1 MGP_AJ_G0035318.1 mouse_genomes_project 9 107880850 107891313 + Nme6 protein_coding processed_transcript MGP_AJ_T0094888.1 MGP_AJ_G0035318.1 mouse_genomes_project 9 107880870 107883688 + Nme6 protein_coding retained_intron MGP_AJ_T0094889.1 MGP_AJ_G0035318.1 mouse_genomes_project 9 107880949 107890943 + MGP_AJ_P0094889 Nme6 protein_coding nonsense_mediated_decay MGP_AJ_T0094890.1 MGP_AJ_G0035318.1 mouse_genomes_project 9 107881108 107891322 + MGP_AJ_P0094890 Nme6 protein_coding protein_coding MGP_AJ_T0094891.1 MGP_AJ_G0035318.1 mouse_genomes_project 9 107881110 107890937 + Nme6 protein_coding processed_transcript MGP_AJ_T0094892.1 MGP_AJ_G0035318.1 mouse_genomes_project 9 107881254 107889936 + Nme6 protein_coding retained_intron MGP_AJ_T0094893.1 MGP_AJ_G0035318.1 mouse_genomes_project 9 107881256 107890904 + Nme6 protein_coding processed_transcript MGP_AJ_T0094894.1 MGP_AJ_G0035318.1 mouse_genomes_project 9 107881354 107891473 + Nme6 protein_coding processed_transcript MGP_AJ_T0095311.1 MGP_AJ_G0035413.1 mouse_genomes_project 9 118345138 118349742 + MGP_AJ_P0095311 Rpsa protein_coding protein_coding MGP_AJ_T0091643.1 MGP_AJ_G0034487.1 mouse_genomes_project 9 24323998 24328884 + MGP_AJ_P0091643 Spata19 protein_coding protein_coding MGP_AJ_T0094946.1 MGP_AJ_G0035323.1 mouse_genomes_project 9 108171480 108201375 + MGP_AJ_P0094946 Smarcc1 protein_coding protein_coding MGP_AJ_T0094947.1 MGP_AJ_G0035323.1 mouse_genomes_project 9 108186298 108296069 + MGP_AJ_P0094947 Smarcc1 protein_coding protein_coding MGP_AJ_T0094948.1 MGP_AJ_G0035323.1 mouse_genomes_project 9 108186355 108268239 + Smarcc1 protein_coding retained_intron MGP_AJ_T0094949.1 MGP_AJ_G0035323.1 mouse_genomes_project 9 108186355 108296069 + MGP_AJ_P0094949 Smarcc1 protein_coding protein_coding MGP_AJ_T0094950.1 MGP_AJ_G0035323.1 mouse_genomes_project 9 108186355 108238750 + MGP_AJ_P0094950 Smarcc1 protein_coding protein_coding MGP_AJ_T0094951.1 MGP_AJ_G0035323.1 mouse_genomes_project 9 108186355 108290544 + MGP_AJ_P0094951 Smarcc1 protein_coding protein_coding MGP_AJ_T0094952.1 MGP_AJ_G0035323.1 mouse_genomes_project 9 108240178 108260531 + Smarcc1 protein_coding retained_intron MGP_AJ_T0094953.1 MGP_AJ_G0035323.1 mouse_genomes_project 9 108290160 108292648 + MGP_AJ_P0094953 Smarcc1 protein_coding protein_coding MGP_AJ_T0094954.1 MGP_AJ_G0035323.1 mouse_genomes_project 9 108291641 108292639 + Smarcc1 protein_coding retained_intron MGP_AJ_T0100307.1 MGP_AJ_G0038273.1 mouse_genomes_project 9 104709526 104709631 - Gm22384 snRNA snRNA MGP_AJ_T0095420.1 MGP_AJ_G0035446.1 mouse_genomes_project 9 121076866 121088540 + MGP_AJ_P0095420 Zkscan7 protein_coding unknown_likely_coding MGP_AJ_T0016134.1 MGP_AJ_G0014229.1 mouse_genomes_project 9 90156223 90156751 - processed_pseudogene processed_pseudogene MGP_AJ_T0094787.1 MGP_AJ_G0035296.1 mouse_genomes_project 9 106817074 106829467 + MGP_AJ_P0094787 Uqcrc1 protein_coding protein_coding MGP_AJ_T0094788.1 MGP_AJ_G0035296.1 mouse_genomes_project 9 106817155 106824747 + MGP_AJ_P0094788 Uqcrc1 protein_coding protein_coding MGP_AJ_T0094789.1 MGP_AJ_G0035296.1 mouse_genomes_project 9 106817156 106824563 + MGP_AJ_P0094789 Uqcrc1 protein_coding nonsense_mediated_decay MGP_AJ_T0094790.1 MGP_AJ_G0035296.1 mouse_genomes_project 9 106817333 106824282 + Uqcrc1 protein_coding retained_intron MGP_AJ_T0094791.1 MGP_AJ_G0035296.1 mouse_genomes_project 9 106822383 106824869 + MGP_AJ_P0094791 Uqcrc1 protein_coding protein_coding MGP_AJ_T0094792.1 MGP_AJ_G0035296.1 mouse_genomes_project 9 106826008 106829463 + Uqcrc1 protein_coding retained_intron MGP_AJ_T0094793.1 MGP_AJ_G0035296.1 mouse_genomes_project 9 106827260 106829384 + MGP_AJ_P0094793 Uqcrc1 protein_coding protein_coding MGP_AJ_T0094794.1 MGP_AJ_G0035296.1 mouse_genomes_project 9 106828154 106828956 + Uqcrc1 protein_coding retained_intron MGP_AJ_T0092582.1 MGP_AJ_G0034840.1 mouse_genomes_project 9 54487728 54491811 + MGP_AJ_P0092582 Man2c1 protein_coding nonsense_mediated_decay MGP_AJ_T0092583.1 MGP_AJ_G0034840.1 mouse_genomes_project 9 54487728 54500385 + MGP_AJ_P0092583 Man2c1 protein_coding protein_coding MGP_AJ_T0092584.1 MGP_AJ_G0034840.1 mouse_genomes_project 9 54487806 54498373 + MGP_AJ_P0092584 Man2c1 protein_coding protein_coding MGP_AJ_T0092585.1 MGP_AJ_G0034840.1 mouse_genomes_project 9 54487806 54494451 + MGP_AJ_P0092585 Man2c1 protein_coding nonsense_mediated_decay MGP_AJ_T0092586.1 MGP_AJ_G0034840.1 mouse_genomes_project 9 54487808 54492786 + Man2c1 protein_coding retained_intron MGP_AJ_T0092587.1 MGP_AJ_G0034840.1 mouse_genomes_project 9 54487808 54499866 + MGP_AJ_P0092587 Man2c1 protein_coding protein_coding MGP_AJ_T0092588.1 MGP_AJ_G0034840.1 mouse_genomes_project 9 54487815 54488292 + Man2c1 protein_coding processed_transcript MGP_AJ_T0092589.1 MGP_AJ_G0034840.1 mouse_genomes_project 9 54487824 54499867 + MGP_AJ_P0092589 Man2c1 protein_coding protein_coding MGP_AJ_T0092590.1 MGP_AJ_G0034840.1 mouse_genomes_project 9 54487824 54497060 + MGP_AJ_P0092590 Man2c1 protein_coding nonsense_mediated_decay MGP_AJ_T0092591.1 MGP_AJ_G0034840.1 mouse_genomes_project 9 54487824 54495465 + MGP_AJ_P0092591 Man2c1 protein_coding nonsense_mediated_decay MGP_AJ_T0092592.1 MGP_AJ_G0034840.1 mouse_genomes_project 9 54488412 54492760 + Man2c1 protein_coding retained_intron MGP_AJ_T0092593.1 MGP_AJ_G0034840.1 mouse_genomes_project 9 54492598 54495185 + Man2c1 protein_coding retained_intron MGP_AJ_T0092594.1 MGP_AJ_G0034840.1 mouse_genomes_project 9 54493246 54494658 + MGP_AJ_P0092594 Man2c1 protein_coding nonsense_mediated_decay MGP_AJ_T0092595.1 MGP_AJ_G0034840.1 mouse_genomes_project 9 54494399 54495499 + Man2c1 protein_coding retained_intron MGP_AJ_T0092596.1 MGP_AJ_G0034840.1 mouse_genomes_project 9 54495704 54498391 + MGP_AJ_P0092596 Man2c1 protein_coding nonsense_mediated_decay MGP_AJ_T0092597.1 MGP_AJ_G0034840.1 mouse_genomes_project 9 54496087 54498074 + MGP_AJ_P0092597 Man2c1 protein_coding nonsense_mediated_decay MGP_AJ_T0092598.1 MGP_AJ_G0034840.1 mouse_genomes_project 9 54496529 54497656 + Man2c1 protein_coding retained_intron MGP_AJ_T0092599.1 MGP_AJ_G0034840.1 mouse_genomes_project 9 54497161 54499876 + Man2c1 protein_coding retained_intron MGP_AJ_T0092600.1 MGP_AJ_G0034840.1 mouse_genomes_project 9 54497161 54498375 + Man2c1 protein_coding retained_intron MGP_AJ_T0092601.1 MGP_AJ_G0034840.1 mouse_genomes_project 9 54497539 54498842 + Man2c1 protein_coding retained_intron MGP_AJ_T0092602.1 MGP_AJ_G0034840.1 mouse_genomes_project 9 54497940 54499870 + Man2c1 protein_coding retained_intron MGP_AJ_T0092603.1 MGP_AJ_G0034840.1 mouse_genomes_project 9 54498345 54499876 + Man2c1 protein_coding retained_intron MGP_AJ_T0092604.1 MGP_AJ_G0034840.1 mouse_genomes_project 9 54499040 54499870 + Man2c1 protein_coding retained_intron MGP_AJ_T0091859.1 MGP_AJ_G0034548.1 mouse_genomes_project 9 34649406 34659860 - MGP_AJ_P0091859 Spa17 protein_coding protein_coding MGP_AJ_T0091964.1 MGP_AJ_G0034636.1 mouse_genomes_project 9 37191479 37192524 - MGP_AJ_P0091964 Olfr979 protein_coding protein_coding MGP_AJ_T0016181.1 MGP_AJ_G0014276.1 mouse_genomes_project 9 115255919 115256281 + processed_pseudogene processed_pseudogene MGP_AJ_T0092100.1 MGP_AJ_G0034681.1 mouse_genomes_project 9 41603116 41614126 - MGP_AJ_P0092100 C2cd2l protein_coding protein_coding MGP_AJ_T0091844.1 MGP_AJ_G0034543.1 mouse_genomes_project 9 34455102 34458328 - Robo3 protein_coding retained_intron MGP_AJ_T0091845.1 MGP_AJ_G0034543.1 mouse_genomes_project 9 34455478 34462065 - Robo3 protein_coding retained_intron MGP_AJ_T0091846.1 MGP_AJ_G0034543.1 mouse_genomes_project 9 34455478 34472893 - MGP_AJ_P0091846 Robo3 protein_coding protein_coding MGP_AJ_T0091847.1 MGP_AJ_G0034543.1 mouse_genomes_project 9 34455478 34469881 - MGP_AJ_P0091847 Robo3 protein_coding protein_coding MGP_AJ_T0091848.1 MGP_AJ_G0034543.1 mouse_genomes_project 9 34455595 34469881 - Robo3 protein_coding retained_intron MGP_AJ_T0091849.1 MGP_AJ_G0034543.1 mouse_genomes_project 9 34456875 34458255 - Robo3 protein_coding retained_intron MGP_AJ_T0005553.1 MGP_AJ_G0004686.1 mouse_genomes_project 9 114160810 114172614 - Gm16142 antisense antisense MGP_AJ_T0098756.1 MGP_AJ_G0036740.1 mouse_genomes_project 9 84970923 84971057 + Gm24649 rRNA rRNA MGP_AJ_T0094337.1 MGP_AJ_G0035234.1 mouse_genomes_project 9 105439221 105442701 + MGP_AJ_P0094337 Nprl2 protein_coding protein_coding MGP_AJ_T0094338.1 MGP_AJ_G0035234.1 mouse_genomes_project 9 105439236 105441629 + MGP_AJ_P0094338 Nprl2 protein_coding nonsense_mediated_decay MGP_AJ_T0094339.1 MGP_AJ_G0035234.1 mouse_genomes_project 9 105439240 105442690 + Nprl2 protein_coding retained_intron MGP_AJ_T0094340.1 MGP_AJ_G0035234.1 mouse_genomes_project 9 105439256 105440683 + Nprl2 protein_coding retained_intron MGP_AJ_T0094341.1 MGP_AJ_G0035234.1 mouse_genomes_project 9 105440971 105441455 + Nprl2 protein_coding retained_intron MGP_AJ_T0092558.1 MGP_AJ_G0034829.1 mouse_genomes_project 9 53480706 53506083 - MGP_AJ_P0092558 Tspan3 protein_coding protein_coding MGP_AJ_T0091252.1 MGP_AJ_G0034323.1 mouse_genomes_project 9 10702520 10721510 - MGP_AJ_P0091252 Cep57 protein_coding nonsense_mediated_decay MGP_AJ_T0091253.1 MGP_AJ_G0034323.1 mouse_genomes_project 9 10702523 10721571 - MGP_AJ_P0091253 Cep57 protein_coding protein_coding MGP_AJ_T0091254.1 MGP_AJ_G0034323.1 mouse_genomes_project 9 10702525 10721687 - MGP_AJ_P0091254 Cep57 protein_coding protein_coding MGP_AJ_T0091255.1 MGP_AJ_G0034323.1 mouse_genomes_project 9 10702553 10721474 - MGP_AJ_P0091255 Cep57 protein_coding protein_coding MGP_AJ_T0091256.1 MGP_AJ_G0034323.1 mouse_genomes_project 9 10703277 10721544 - MGP_AJ_P0091256 Cep57 protein_coding nonsense_mediated_decay MGP_AJ_T0091257.1 MGP_AJ_G0034323.1 mouse_genomes_project 9 10703475 10705143 - Cep57 protein_coding retained_intron MGP_AJ_T0091258.1 MGP_AJ_G0034323.1 mouse_genomes_project 9 10703544 10713394 - MGP_AJ_P0091258 Cep57 protein_coding protein_coding MGP_AJ_T0091259.1 MGP_AJ_G0034323.1 mouse_genomes_project 9 10705448 10713638 - MGP_AJ_P0091259 Cep57 protein_coding protein_coding MGP_AJ_T0091260.1 MGP_AJ_G0034323.1 mouse_genomes_project 9 10707784 10713674 - Cep57 protein_coding retained_intron MGP_AJ_T0091261.1 MGP_AJ_G0034323.1 mouse_genomes_project 9 10708160 10721572 - MGP_AJ_P0091261 Cep57 protein_coding nonsense_mediated_decay MGP_AJ_T0091262.1 MGP_AJ_G0034323.1 mouse_genomes_project 9 10708175 10711126 - Cep57 protein_coding retained_intron MGP_AJ_T0094555.1 MGP_AJ_G0035262.1 mouse_genomes_project 9 105957325 105988828 - MGP_AJ_P0094555 Rnf123 protein_coding protein_coding MGP_AJ_T0094556.1 MGP_AJ_G0035262.1 mouse_genomes_project 9 105957463 105984783 - MGP_AJ_P0094556 Rnf123 protein_coding protein_coding MGP_AJ_T0094557.1 MGP_AJ_G0035262.1 mouse_genomes_project 9 105957468 105985222 - Rnf123 protein_coding retained_intron MGP_AJ_T0094558.1 MGP_AJ_G0035262.1 mouse_genomes_project 9 105957468 105984857 - MGP_AJ_P0094558 Rnf123 protein_coding protein_coding MGP_AJ_T0094559.1 MGP_AJ_G0035262.1 mouse_genomes_project 9 105957468 105984783 - MGP_AJ_P0094559 Rnf123 protein_coding protein_coding MGP_AJ_T0094560.1 MGP_AJ_G0035262.1 mouse_genomes_project 9 105957484 105958022 - Rnf123 protein_coding retained_intron MGP_AJ_T0094561.1 MGP_AJ_G0035262.1 mouse_genomes_project 9 105958016 105965538 - MGP_AJ_P0094561 Rnf123 protein_coding nonsense_mediated_decay MGP_AJ_T0094562.1 MGP_AJ_G0035262.1 mouse_genomes_project 9 105958025 105984857 - MGP_AJ_P0094562 Rnf123 protein_coding protein_coding MGP_AJ_T0094563.1 MGP_AJ_G0035262.1 mouse_genomes_project 9 105958033 105958491 - Rnf123 protein_coding retained_intron MGP_AJ_T0094565.1 MGP_AJ_G0035262.1 mouse_genomes_project 9 105961690 105985210 - Rnf123 protein_coding retained_intron MGP_AJ_T0094566.1 MGP_AJ_G0035262.1 mouse_genomes_project 9 105961857 105962831 - Rnf123 protein_coding retained_intron MGP_AJ_T0094567.1 MGP_AJ_G0035262.1 mouse_genomes_project 9 105962351 105965573 - MGP_AJ_P0094567 Rnf123 protein_coding nonsense_mediated_decay MGP_AJ_T0094568.1 MGP_AJ_G0035262.1 mouse_genomes_project 9 105963959 105967797 - Rnf123 protein_coding retained_intron MGP_AJ_T0094569.1 MGP_AJ_G0035262.1 mouse_genomes_project 9 105976965 105983751 - MGP_AJ_P0094569 Rnf123 protein_coding protein_coding MGP_AJ_T0094570.1 MGP_AJ_G0035262.1 mouse_genomes_project 9 105977024 105984787 - MGP_AJ_P0094570 Rnf123 protein_coding protein_coding MGP_AJ_T0094571.1 MGP_AJ_G0035262.1 mouse_genomes_project 9 105977251 105984748 - MGP_AJ_P0094571 Rnf123 protein_coding protein_coding MGP_AJ_T0094572.1 MGP_AJ_G0035262.1 mouse_genomes_project 9 105983203 105988826 - MGP_AJ_P0094572 Rnf123 protein_coding protein_coding MGP_AJ_T0091673.1 MGP_AJ_G0034495.1 mouse_genomes_project 9 28115234 28177531 - MGP_AJ_P0091673 Aplp2 protein_coding protein_coding MGP_AJ_T0091674.1 MGP_AJ_G0034495.1 mouse_genomes_project 9 28115234 28177531 - MGP_AJ_P0091674 Aplp2 protein_coding protein_coding MGP_AJ_T0093437.1 MGP_AJ_G0035055.1 mouse_genomes_project 9 77392902 77513361 - MGP_AJ_P0093437 Col12a1 protein_coding protein_coding MGP_AJ_T0093438.1 MGP_AJ_G0035055.1 mouse_genomes_project 9 77392902 77406891 - MGP_AJ_P0093438 Col12a1 protein_coding protein_coding MGP_AJ_T0093439.1 MGP_AJ_G0035055.1 mouse_genomes_project 9 77395666 77513563 - MGP_AJ_P0093439 Col12a1 protein_coding protein_coding MGP_AJ_T0093440.1 MGP_AJ_G0035055.1 mouse_genomes_project 9 77486366 77513563 - Col12a1 protein_coding retained_intron MGP_AJ_T0093441.1 MGP_AJ_G0035055.1 mouse_genomes_project 9 77507386 77513674 - Col12a1 protein_coding retained_intron MGP_AJ_T0093442.1 MGP_AJ_G0035055.1 mouse_genomes_project 9 77509758 77513337 - Col12a1 protein_coding retained_intron MGP_AJ_T0100264.1 MGP_AJ_G0038230.1 mouse_genomes_project 9 41768684 41768801 - Gm22540 snRNA snRNA MGP_AJ_T0092369.1 MGP_AJ_G0034771.1 mouse_genomes_project 9 48150909 48153308 - MGP_AJ_P0092369 1110032A03Rik protein_coding protein_coding MGP_AJ_T0092370.1 MGP_AJ_G0034771.1 mouse_genomes_project 9 48150931 48163231 - 1110032A03Rik protein_coding retained_intron MGP_AJ_T0092371.1 MGP_AJ_G0034771.1 mouse_genomes_project 9 48150934 48151767 - 1110032A03Rik protein_coding retained_intron MGP_AJ_T0092372.1 MGP_AJ_G0034771.1 mouse_genomes_project 9 48151060 48155098 - MGP_AJ_P0092372 1110032A03Rik protein_coding protein_coding MGP_AJ_T0092373.1 MGP_AJ_G0034771.1 mouse_genomes_project 9 48151061 48155359 - MGP_AJ_P0092373 1110032A03Rik protein_coding protein_coding MGP_AJ_T0092374.1 MGP_AJ_G0034771.1 mouse_genomes_project 9 48151902 48155297 - 1110032A03Rik protein_coding processed_transcript MGP_AJ_T0092375.1 MGP_AJ_G0034771.1 mouse_genomes_project 9 48152016 48155368 - 1110032A03Rik protein_coding processed_transcript MGP_AJ_T0092379.1 MGP_AJ_G0034771.1 mouse_genomes_project 9 48155792 48158143 - 1110032A03Rik protein_coding processed_transcript MGP_AJ_T0002389.1 MGP_AJ_G0002299.1 mouse_genomes_project 9 74455055 74458326 + TEC TEC MGP_AJ_T0091904.1 MGP_AJ_G0034588.1 mouse_genomes_project 9 35820459 35821437 - MGP_AJ_P0091904 Olfr918 protein_coding protein_coding MGP_AJ_T0005434.1 MGP_AJ_G0004603.1 mouse_genomes_project 9 42648085 42651870 - 1700003G13Rik antisense antisense MGP_AJ_T0005435.1 MGP_AJ_G0004603.1 mouse_genomes_project 9 42648086 42651891 - 1700003G13Rik antisense antisense MGP_AJ_T0092919.1 MGP_AJ_G0034929.1 mouse_genomes_project 9 62630606 62667032 + MGP_AJ_P0092919 Igdcc4 protein_coding protein_coding MGP_AJ_T0092920.1 MGP_AJ_G0034929.1 mouse_genomes_project 9 62630655 62664672 + MGP_AJ_P0092920 Igdcc4 protein_coding protein_coding MGP_AJ_T0092572.1 MGP_AJ_G0034838.1 mouse_genomes_project 9 54350238 54418673 + MGP_AJ_P0092572 Ptpn9 protein_coding protein_coding MGP_AJ_T0002417.1 MGP_AJ_G0002326.1 mouse_genomes_project 9 93175362 93176454 + TEC TEC MGP_AJ_T0092340.1 MGP_AJ_G0034765.1 mouse_genomes_project 9 48001501 48008412 + MGP_AJ_P0092340 Pih1d2 protein_coding protein_coding MGP_AJ_T0092341.1 MGP_AJ_G0034765.1 mouse_genomes_project 9 48001513 48006710 + Pih1d2 protein_coding retained_intron MGP_AJ_T0092342.1 MGP_AJ_G0034765.1 mouse_genomes_project 9 48001517 48005959 + MGP_AJ_P0092342 Pih1d2 protein_coding protein_coding MGP_AJ_T0092343.1 MGP_AJ_G0034765.1 mouse_genomes_project 9 48001563 48008415 + MGP_AJ_P0092343 Pih1d2 protein_coding nonsense_mediated_decay MGP_AJ_T0092344.1 MGP_AJ_G0034765.1 mouse_genomes_project 9 48001701 48002998 + Pih1d2 protein_coding retained_intron MGP_AJ_T0092345.1 MGP_AJ_G0034765.1 mouse_genomes_project 9 48001730 48005371 + MGP_AJ_P0092345 Pih1d2 protein_coding protein_coding MGP_AJ_T0092346.1 MGP_AJ_G0034765.1 mouse_genomes_project 9 48002187 48005246 + MGP_AJ_P0092346 Pih1d2 protein_coding protein_coding MGP_AJ_T0009299.1 MGP_AJ_G0007471.1 mouse_genomes_project 9 87884378 87886086 + Gm26882 lincRNA lincRNA MGP_AJ_T0093322.1 MGP_AJ_G0035017.1 mouse_genomes_project 9 72962821 72997510 + MGP_AJ_P0093322 Gnb5 protein_coding protein_coding MGP_AJ_T0101883.1 MGP_AJ_G0039757.1 mouse_genomes_project 9 105188074 105188957 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0101884.1 MGP_AJ_G0039757.1 mouse_genomes_project 9 105188643 105192813 - transcribed_processed_pseudogene processed_transcript MGP_AJ_T0018511.1 MGP_AJ_G0015712.1 mouse_genomes_project 9 38013816 38017177 - Gm16096 processed_transcript processed_transcript MGP_AJ_T0018512.1 MGP_AJ_G0015712.1 mouse_genomes_project 9 38013822 38016461 - Gm16096 processed_transcript processed_transcript MGP_AJ_T0016147.1 MGP_AJ_G0014242.1 mouse_genomes_project 9 94374600 94374805 + processed_pseudogene processed_pseudogene MGP_AJ_T0100259.1 MGP_AJ_G0038225.1 mouse_genomes_project 9 29421534 29421641 - Gm22060 snRNA snRNA MGP_AJ_T0092936.1 MGP_AJ_G0034939.1 mouse_genomes_project 9 62972534 62990648 + MGP_AJ_P0092936 Mtfmt protein_coding protein_coding MGP_AJ_T0092937.1 MGP_AJ_G0034939.1 mouse_genomes_project 9 62972540 62990007 + Mtfmt protein_coding retained_intron MGP_AJ_T0092938.1 MGP_AJ_G0034939.1 mouse_genomes_project 9 62973759 62984000 + Mtfmt protein_coding processed_transcript MGP_AJ_T0092939.1 MGP_AJ_G0034939.1 mouse_genomes_project 9 62980266 62989715 + Mtfmt protein_coding retained_intron MGP_AJ_T0009215.1 MGP_AJ_G0007402.1 mouse_genomes_project 9 17913363 17916856 - Gm26592 lincRNA lincRNA MGP_AJ_T0009347.1 MGP_AJ_G0007508.1 mouse_genomes_project 9 110290988 110291652 + 2310075C17Rik lincRNA lincRNA MGP_AJ_T0092277.1 MGP_AJ_G0034737.1 mouse_genomes_project 9 44899683 45224132 + MGP_AJ_P0092277 Cadm1 protein_coding protein_coding MGP_AJ_T0092278.1 MGP_AJ_G0034737.1 mouse_genomes_project 9 44899721 45221338 + MGP_AJ_P0092278 Cadm1 protein_coding protein_coding MGP_AJ_T0092279.1 MGP_AJ_G0034737.1 mouse_genomes_project 9 44899754 45228390 + MGP_AJ_P0092279 Cadm1 protein_coding protein_coding MGP_AJ_T0092280.1 MGP_AJ_G0034737.1 mouse_genomes_project 9 44899767 45224127 + MGP_AJ_P0092280 Cadm1 protein_coding protein_coding MGP_AJ_T0092281.1 MGP_AJ_G0034737.1 mouse_genomes_project 9 44899767 45221780 + MGP_AJ_P0092281 Cadm1 protein_coding protein_coding MGP_AJ_T0092282.1 MGP_AJ_G0034737.1 mouse_genomes_project 9 44899862 45189075 + Cadm1 protein_coding retained_intron MGP_AJ_T0092283.1 MGP_AJ_G0034737.1 mouse_genomes_project 9 44899862 45162628 + Cadm1 protein_coding retained_intron MGP_AJ_T0092284.1 MGP_AJ_G0034737.1 mouse_genomes_project 9 44899883 45184034 + Cadm1 protein_coding processed_transcript MGP_AJ_T0092285.1 MGP_AJ_G0034737.1 mouse_genomes_project 9 44899883 45221141 + MGP_AJ_P0092285 Cadm1 protein_coding protein_coding MGP_AJ_T0092509.1 MGP_AJ_G0034817.1 mouse_genomes_project 9 52350960 52366220 - MGP_AJ_P0092509 Chrna3 protein_coding protein_coding MGP_AJ_T0095198.1 MGP_AJ_G0035380.1 mouse_genomes_project 9 114260877 114353108 - MGP_AJ_P0095198 Tgfbr2 protein_coding protein_coding MGP_AJ_T0095199.1 MGP_AJ_G0035380.1 mouse_genomes_project 9 114260877 114353108 - MGP_AJ_P0095199 Tgfbr2 protein_coding protein_coding MGP_AJ_T0011751.1 MGP_AJ_G0009873.1 mouse_genomes_project 9 119012534 119012855 - Gm23624 misc_RNA misc_RNA MGP_AJ_T0092004.1 MGP_AJ_G0034653.1 mouse_genomes_project 9 38209128 38220813 - MGP_AJ_P0092004 Crtam protein_coding protein_coding MGP_AJ_T0092005.1 MGP_AJ_G0034653.1 mouse_genomes_project 9 38209171 38240512 - MGP_AJ_P0092005 Crtam protein_coding protein_coding MGP_AJ_T0092006.1 MGP_AJ_G0034653.1 mouse_genomes_project 9 38209173 38240568 - MGP_AJ_P0092006 Crtam protein_coding protein_coding MGP_AJ_T0092007.1 MGP_AJ_G0034653.1 mouse_genomes_project 9 38209174 38240554 - MGP_AJ_P0092007 Crtam protein_coding protein_coding MGP_AJ_T0092042.1 MGP_AJ_G0034668.1 mouse_genomes_project 9 41327258 41332429 + MGP_AJ_P0092042 Thy1 protein_coding protein_coding MGP_AJ_T0016142.1 MGP_AJ_G0014237.1 mouse_genomes_project 9 93194378 93195090 + processed_pseudogene processed_pseudogene MGP_AJ_T0100276.1 MGP_AJ_G0038242.1 mouse_genomes_project 9 62725111 62725238 - Gm25313 snRNA snRNA MGP_AJ_T0011044.1 MGP_AJ_G0009166.1 mouse_genomes_project 9 18392715 18392785 - Mir199a-1 miRNA miRNA MGP_AJ_T0093125.1 MGP_AJ_G0034981.1 mouse_genomes_project 9 68052241 68134084 - MGP_AJ_P0093125 Rnf111 protein_coding unknown_likely_coding MGP_AJ_T0093126.1 MGP_AJ_G0034981.1 mouse_genomes_project 9 68052248 68134149 - MGP_AJ_P0093126 Rnf111 protein_coding protein_coding MGP_AJ_T0093127.1 MGP_AJ_G0034981.1 mouse_genomes_project 9 68052249 68133779 - MGP_AJ_P0093127 Rnf111 protein_coding protein_coding MGP_AJ_T0091165.1 MGP_AJ_G0034293.1 mouse_genomes_project 9 3197699 3199219 - MGP_AJ_P0091165 Ddi1 protein_coding protein_coding MGP_AJ_T0095425.1 MGP_AJ_G0035449.1 mouse_genomes_project 9 121142116 121211347 + MGP_AJ_P0095425 protein_coding protein_coding MGP_AJ_T0093584.1 MGP_AJ_G0035080.1 mouse_genomes_project 9 84533256 84548166 + MGP_AJ_P0093584 Prss35 protein_coding protein_coding MGP_AJ_T0093585.1 MGP_AJ_G0035080.1 mouse_genomes_project 9 84533256 84548337 + MGP_AJ_P0093585 Prss35 protein_coding protein_coding MGP_AJ_T0094965.1 MGP_AJ_G0035326.1 mouse_genomes_project 9 108390651 108430466 + MGP_AJ_P0094965 Scap protein_coding protein_coding MGP_AJ_T0094966.1 MGP_AJ_G0035326.1 mouse_genomes_project 9 108390659 108410764 + Scap protein_coding retained_intron MGP_AJ_T0094967.1 MGP_AJ_G0035326.1 mouse_genomes_project 9 108390719 108442328 + MGP_AJ_P0094967 Scap protein_coding protein_coding MGP_AJ_T0094968.1 MGP_AJ_G0035326.1 mouse_genomes_project 9 108390913 108410612 + MGP_AJ_P0094968 Scap protein_coding protein_coding MGP_AJ_T0094969.1 MGP_AJ_G0035326.1 mouse_genomes_project 9 108390999 108429698 + MGP_AJ_P0094969 Scap protein_coding protein_coding MGP_AJ_T0094970.1 MGP_AJ_G0035326.1 mouse_genomes_project 9 108401646 108410612 + MGP_AJ_P0094970 Scap protein_coding protein_coding MGP_AJ_T0094971.1 MGP_AJ_G0035326.1 mouse_genomes_project 9 108418593 108421094 + Scap protein_coding retained_intron MGP_AJ_T0094972.1 MGP_AJ_G0035326.1 mouse_genomes_project 9 108419026 108429667 + Scap protein_coding processed_transcript MGP_AJ_T0094973.1 MGP_AJ_G0035326.1 mouse_genomes_project 9 108431694 108434074 + Scap protein_coding retained_intron MGP_AJ_T0094974.1 MGP_AJ_G0035326.1 mouse_genomes_project 9 108435667 108436151 + Scap protein_coding retained_intron MGP_AJ_T0092510.1 MGP_AJ_G0034818.1 mouse_genomes_project 9 52367814 52388676 - MGP_AJ_P0092510 Chrnb4 protein_coding protein_coding MGP_AJ_T0101546.1 MGP_AJ_G0039512.1 mouse_genomes_project 9 22484016 22484125 - Gm25861 snoRNA snoRNA MGP_AJ_T0011108.1 MGP_AJ_G0009230.1 mouse_genomes_project 9 120487323 120487462 - Mir8106 miRNA miRNA MGP_AJ_T0094332.1 MGP_AJ_G0035233.1 mouse_genomes_project 9 105436002 105438861 - MGP_AJ_P0094332 Cyb561d2 protein_coding protein_coding MGP_AJ_T0094333.1 MGP_AJ_G0035233.1 mouse_genomes_project 9 105436570 105439189 - MGP_AJ_P0094333 Cyb561d2 protein_coding protein_coding MGP_AJ_T0094334.1 MGP_AJ_G0035233.1 mouse_genomes_project 9 105436576 105438520 - MGP_AJ_P0094334 Cyb561d2 protein_coding protein_coding MGP_AJ_T0094335.1 MGP_AJ_G0035233.1 mouse_genomes_project 9 105436872 105439120 - Cyb561d2 protein_coding processed_transcript MGP_AJ_T0094336.1 MGP_AJ_G0035233.1 mouse_genomes_project 9 105437037 105439123 - MGP_AJ_P0094336 Cyb561d2 protein_coding nonsense_mediated_decay MGP_AJ_T0093424.1 MGP_AJ_G0035051.1 mouse_genomes_project 9 76228709 76229631 - MGP_AJ_P0093424 Gm17324 protein_coding protein_coding MGP_AJ_T0011753.1 MGP_AJ_G0009875.1 mouse_genomes_project 9 121000346 121000614 + Gm25341 misc_RNA misc_RNA MGP_AJ_T0009234.1 MGP_AJ_G0007419.1 mouse_genomes_project 9 33687882 33709312 - 1700027I24Rik lincRNA lincRNA MGP_AJ_T0100277.1 MGP_AJ_G0038243.1 mouse_genomes_project 9 62730387 62730503 - Rnu5g snRNA snRNA MGP_AJ_T0093129.1 MGP_AJ_G0034983.1 mouse_genomes_project 9 68231114 68289746 - MGP_AJ_P0093129 Fam63b protein_coding protein_coding MGP_AJ_T0016058.1 MGP_AJ_G0014153.1 mouse_genomes_project 9 32535910 32536180 - processed_pseudogene processed_pseudogene MGP_AJ_T0018576.1 MGP_AJ_G0015734.1 mouse_genomes_project 9 99594906 99683710 - Gm29521 processed_transcript lincRNA MGP_AJ_T0018577.1 MGP_AJ_G0015734.1 mouse_genomes_project 9 99680541 99683752 - Gm29521 processed_transcript retained_intron MGP_AJ_T0093689.1 MGP_AJ_G0035104.1 mouse_genomes_project 9 89162934 89170581 - MGP_AJ_P0093689 Zic1 protein_coding protein_coding MGP_AJ_T0093690.1 MGP_AJ_G0035104.1 mouse_genomes_project 9 89165376 89170623 - MGP_AJ_P0093690 Zic1 protein_coding protein_coding MGP_AJ_T0093691.1 MGP_AJ_G0035104.1 mouse_genomes_project 9 89166455 89167922 - Zic1 protein_coding processed_transcript MGP_AJ_T0093118.1 MGP_AJ_G0034977.1 mouse_genomes_project 9 67650254 67656829 - MGP_AJ_P0093118 Gcnt3 protein_coding protein_coding MGP_AJ_T0009355.1 MGP_AJ_G0007513.1 mouse_genomes_project 9 117141867 117142875 + Gm16295 lincRNA lincRNA MGP_AJ_T0002391.1 MGP_AJ_G0002301.1 mouse_genomes_project 9 75068204 75068755 + TEC TEC MGP_AJ_T0091833.1 MGP_AJ_G0034538.1 mouse_genomes_project 9 34244763 34261858 + MGP_AJ_P0091833 Tmem218 protein_coding protein_coding MGP_AJ_T0005529.1 MGP_AJ_G0004665.1 mouse_genomes_project 9 105195972 105197431 - Gm17041 antisense antisense MGP_AJ_T0094013.1 MGP_AJ_G0035176.1 mouse_genomes_project 9 101040822 101068834 - MGP_AJ_P0094013 Trf protein_coding protein_coding MGP_AJ_T0094014.1 MGP_AJ_G0035176.1 mouse_genomes_project 9 101046102 101069005 - MGP_AJ_P0094014 Trf protein_coding protein_coding MGP_AJ_T0094015.1 MGP_AJ_G0035176.1 mouse_genomes_project 9 101046178 101068777 - MGP_AJ_P0094015 Trf protein_coding unknown_likely_coding MGP_AJ_T0094016.1 MGP_AJ_G0035176.1 mouse_genomes_project 9 101046332 101049283 - Trf protein_coding retained_intron MGP_AJ_T0094017.1 MGP_AJ_G0035176.1 mouse_genomes_project 9 101047846 101057182 - MGP_AJ_P0094017 Trf protein_coding protein_coding MGP_AJ_T0094018.1 MGP_AJ_G0035176.1 mouse_genomes_project 9 101047914 101059387 - MGP_AJ_P0094018 Trf protein_coding protein_coding MGP_AJ_T0094019.1 MGP_AJ_G0035176.1 mouse_genomes_project 9 101053111 101068831 - MGP_AJ_P0094019 Trf protein_coding nonsense_mediated_decay MGP_AJ_T0094020.1 MGP_AJ_G0035176.1 mouse_genomes_project 9 101058210 101060001 - Trf protein_coding retained_intron MGP_AJ_T0094021.1 MGP_AJ_G0035176.1 mouse_genomes_project 9 101059420 101068827 - MGP_AJ_P0094021 Trf protein_coding protein_coding MGP_AJ_T0094022.1 MGP_AJ_G0035176.1 mouse_genomes_project 9 101060410 101067056 - MGP_AJ_P0094022 Trf protein_coding protein_coding MGP_AJ_T0091926.1 MGP_AJ_G0034604.1 mouse_genomes_project 9 36211895 36212831 - MGP_AJ_P0091926 Olfr937 protein_coding protein_coding MGP_AJ_T0094347.1 MGP_AJ_G0035236.1 mouse_genomes_project 9 105448521 105459217 + MGP_AJ_P0094347 Rassf1 protein_coding protein_coding MGP_AJ_T0094348.1 MGP_AJ_G0035236.1 mouse_genomes_project 9 105448528 105451473 + Rassf1 protein_coding retained_intron MGP_AJ_T0094349.1 MGP_AJ_G0035236.1 mouse_genomes_project 9 105448533 105459213 + MGP_AJ_P0094349 Rassf1 protein_coding protein_coding MGP_AJ_T0094350.1 MGP_AJ_G0035236.1 mouse_genomes_project 9 105448556 105459213 + MGP_AJ_P0094350 Rassf1 protein_coding nonsense_mediated_decay MGP_AJ_T0094351.1 MGP_AJ_G0035236.1 mouse_genomes_project 9 105451549 105459213 + MGP_AJ_P0094351 Rassf1 protein_coding protein_coding MGP_AJ_T0094352.1 MGP_AJ_G0035236.1 mouse_genomes_project 9 105452342 105454762 + Rassf1 protein_coding processed_transcript MGP_AJ_T0094353.1 MGP_AJ_G0035236.1 mouse_genomes_project 9 105453572 105459213 + Rassf1 protein_coding processed_transcript MGP_AJ_T0094354.1 MGP_AJ_G0035236.1 mouse_genomes_project 9 105453704 105459213 + Rassf1 protein_coding retained_intron MGP_AJ_T0094355.1 MGP_AJ_G0035236.1 mouse_genomes_project 9 105454896 105458781 + Rassf1 protein_coding retained_intron MGP_AJ_T0094356.1 MGP_AJ_G0035236.1 mouse_genomes_project 9 105454903 105457377 + Rassf1 protein_coding retained_intron MGP_AJ_T0005448.1 MGP_AJ_G0004611.1 mouse_genomes_project 9 52882500 52883499 - Gm17226 antisense antisense MGP_AJ_T0005449.1 MGP_AJ_G0004611.1 mouse_genomes_project 9 52882511 52883840 - Gm17226 antisense antisense MGP_AJ_T0009273.1 MGP_AJ_G0007450.1 mouse_genomes_project 9 70421545 70423712 - Gm27204 lincRNA lincRNA MGP_AJ_T0093533.1 MGP_AJ_G0035071.1 mouse_genomes_project 9 81687524 81881414 + MGP_AJ_P0093533 Bckdhb protein_coding protein_coding MGP_AJ_T0093534.1 MGP_AJ_G0035071.1 mouse_genomes_project 9 81687549 81824276 + MGP_AJ_P0093534 Bckdhb protein_coding protein_coding MGP_AJ_T0093535.1 MGP_AJ_G0035071.1 mouse_genomes_project 9 81709334 81881415 + MGP_AJ_P0093535 Bckdhb protein_coding protein_coding MGP_AJ_T0093536.1 MGP_AJ_G0035071.1 mouse_genomes_project 9 81790090 81881373 + Bckdhb protein_coding processed_transcript MGP_AJ_T0093537.1 MGP_AJ_G0035071.1 mouse_genomes_project 9 81800354 81881414 + Bckdhb protein_coding processed_transcript MGP_AJ_T0093538.1 MGP_AJ_G0035071.1 mouse_genomes_project 9 81863750 81881415 + Bckdhb protein_coding processed_transcript MGP_AJ_T0093480.1 MGP_AJ_G0035062.1 mouse_genomes_project 9 79365408 79371111 - MGP_AJ_P0093480 Htr1b protein_coding protein_coding MGP_AJ_T0093481.1 MGP_AJ_G0035062.1 mouse_genomes_project 9 79368625 79369898 - MGP_AJ_P0093481 Htr1b protein_coding protein_coding MGP_AJ_T0091764.1 MGP_AJ_G0034516.1 mouse_genomes_project 9 32506814 32516398 - MGP_AJ_P0091764 Hyls1 protein_coding protein_coding MGP_AJ_T0091765.1 MGP_AJ_G0034516.1 mouse_genomes_project 9 32510457 32516097 - Hyls1 protein_coding retained_intron MGP_AJ_T0092314.1 MGP_AJ_G0034752.1 mouse_genomes_project 9 46726079 46792110 + MGP_AJ_P0092314 Drd2 protein_coding protein_coding MGP_AJ_T0094564.1 MGP_AJ_G0035263.1 mouse_genomes_project 9 105958950 105961493 + MGP_AJ_P0094564 Amigo3 protein_coding protein_coding MGP_AJ_T0091539.1 MGP_AJ_G0034443.1 mouse_genomes_project 9 18806408 18817110 - MGP_AJ_P0091539 Rab3d protein_coding protein_coding MGP_AJ_T0091540.1 MGP_AJ_G0034443.1 mouse_genomes_project 9 18806427 18817057 - MGP_AJ_P0091540 Rab3d protein_coding protein_coding MGP_AJ_T0091541.1 MGP_AJ_G0034443.1 mouse_genomes_project 9 18807559 18817035 - MGP_AJ_P0091541 Rab3d protein_coding protein_coding MGP_AJ_T0091542.1 MGP_AJ_G0034443.1 mouse_genomes_project 9 18813809 18817007 - MGP_AJ_P0091542 Rab3d protein_coding protein_coding MGP_AJ_T0091543.1 MGP_AJ_G0034443.1 mouse_genomes_project 9 18814532 18817039 - Rab3d protein_coding retained_intron MGP_AJ_T0018570.1 MGP_AJ_G0015732.1 mouse_genomes_project 9 96361553 96362917 - 4930579K19Rik processed_transcript lincRNA MGP_AJ_T0018571.1 MGP_AJ_G0015732.1 mouse_genomes_project 9 96361784 96362936 - 4930579K19Rik processed_transcript TEC MGP_AJ_T0018572.1 MGP_AJ_G0015732.1 mouse_genomes_project 9 96362284 96362936 - 4930579K19Rik processed_transcript processed_transcript MGP_AJ_T0091965.1 MGP_AJ_G0034637.1 mouse_genomes_project 9 37196082 37198249 - MGP_AJ_P0091965 protein_coding protein_coding MGP_AJ_T0091191.1 MGP_AJ_G0034304.1 mouse_genomes_project 9 4592368 4639395 + MGP_AJ_P0091191 Mmp20 protein_coding protein_coding MGP_AJ_T0091697.1 MGP_AJ_G0034501.1 mouse_genomes_project 9 29286968 29317749 - MGP_AJ_P0091697 Kcnj5 protein_coding protein_coding MGP_AJ_T0091604.1 MGP_AJ_G0034471.1 mouse_genomes_project 9 21474003 21620944 - MGP_AJ_P0091604 Dpy19l2 protein_coding protein_coding MGP_AJ_T0009321.1 MGP_AJ_G0007488.1 mouse_genomes_project 9 98154390 98156280 - Gm28167 lincRNA lincRNA MGP_AJ_T0095175.1 MGP_AJ_G0035367.1 mouse_genomes_project 9 112557945 112568044 + MGP_AJ_P0095175 Tmppe protein_coding protein_coding MGP_AJ_T0009221.1 MGP_AJ_G0007408.1 mouse_genomes_project 9 24116328 24116769 - Gm29172 lincRNA lincRNA MGP_AJ_T0095152.1 MGP_AJ_G0035359.1 mouse_genomes_project 9 111701021 111758275 - MGP_AJ_P0095152 Pdcd6ip protein_coding protein_coding MGP_AJ_T0095153.1 MGP_AJ_G0035359.1 mouse_genomes_project 9 111703749 111758260 - MGP_AJ_P0095153 Pdcd6ip protein_coding protein_coding MGP_AJ_T0095154.1 MGP_AJ_G0035359.1 mouse_genomes_project 9 111704843 111706568 - Pdcd6ip protein_coding retained_intron MGP_AJ_T0095155.1 MGP_AJ_G0035359.1 mouse_genomes_project 9 111708908 111711688 - Pdcd6ip protein_coding retained_intron MGP_AJ_T0095156.1 MGP_AJ_G0035359.1 mouse_genomes_project 9 111723703 111734675 - Pdcd6ip protein_coding processed_transcript MGP_AJ_T0095157.1 MGP_AJ_G0035359.1 mouse_genomes_project 9 111736772 111747630 - Pdcd6ip protein_coding retained_intron MGP_AJ_T0094280.1 MGP_AJ_G0035225.1 mouse_genomes_project 9 104782223 104788730 - MGP_AJ_P0094280 Rbm15b protein_coding protein_coding MGP_AJ_T0094281.1 MGP_AJ_G0035225.1 mouse_genomes_project 9 104786052 104786921 - MGP_AJ_P0094281 Rbm15b protein_coding protein_coding MGP_AJ_T0093913.1 MGP_AJ_G0035155.1 mouse_genomes_project 9 97507884 97530118 - MGP_AJ_P0093913 Cldn18 protein_coding protein_coding MGP_AJ_T0093914.1 MGP_AJ_G0035155.1 mouse_genomes_project 9 97510301 97537318 - MGP_AJ_P0093914 Cldn18 protein_coding protein_coding MGP_AJ_T0093915.1 MGP_AJ_G0035155.1 mouse_genomes_project 9 97510663 97530064 - MGP_AJ_P0093915 Cldn18 protein_coding protein_coding MGP_AJ_T0093916.1 MGP_AJ_G0035155.1 mouse_genomes_project 9 97511203 97537318 - MGP_AJ_P0093916 Cldn18 protein_coding protein_coding MGP_AJ_T0092296.1 MGP_AJ_G0034744.1 mouse_genomes_project 9 45968030 45973539 - Nnmt protein_coding processed_transcript MGP_AJ_T0092297.1 MGP_AJ_G0034744.1 mouse_genomes_project 9 45968030 45981066 - MGP_AJ_P0092297 Nnmt protein_coding protein_coding MGP_AJ_T0092298.1 MGP_AJ_G0034744.1 mouse_genomes_project 9 45968030 45981066 - MGP_AJ_P0092298 Nnmt protein_coding protein_coding MGP_AJ_T0092299.1 MGP_AJ_G0034744.1 mouse_genomes_project 9 45968044 45973613 - Nnmt protein_coding processed_transcript MGP_AJ_T0092300.1 MGP_AJ_G0034744.1 mouse_genomes_project 9 45979224 45980990 - Nnmt protein_coding retained_intron MGP_AJ_T0093000.1 MGP_AJ_G0034954.1 mouse_genomes_project 9 63707686 63823024 + MGP_AJ_P0093000 Dapk2 protein_coding protein_coding MGP_AJ_T0093001.1 MGP_AJ_G0034954.1 mouse_genomes_project 9 63707698 63771350 + Dapk2 protein_coding retained_intron MGP_AJ_T0093002.1 MGP_AJ_G0034954.1 mouse_genomes_project 9 63770017 63819738 + MGP_AJ_P0093002 Dapk2 protein_coding nonsense_mediated_decay MGP_AJ_T0093003.1 MGP_AJ_G0034954.1 mouse_genomes_project 9 63819181 63822497 + Dapk2 protein_coding retained_intron MGP_AJ_T0016186.1 MGP_AJ_G0014281.1 mouse_genomes_project 9 121508993 121509420 - processed_pseudogene processed_pseudogene MGP_AJ_T0002350.1 MGP_AJ_G0002260.1 mouse_genomes_project 9 29482940 29485579 - TEC TEC MGP_AJ_T0002457.1 MGP_AJ_G0002366.1 mouse_genomes_project 9 106095429 106096159 - TEC TEC MGP_AJ_T0094057.1 MGP_AJ_G0035184.1 mouse_genomes_project 9 101897355 101913667 - MGP_AJ_P0094057 Uba5 protein_coding protein_coding MGP_AJ_T0094058.1 MGP_AJ_G0035184.1 mouse_genomes_project 9 101898404 101907544 - MGP_AJ_P0094058 Uba5 protein_coding protein_coding MGP_AJ_T0094059.1 MGP_AJ_G0035184.1 mouse_genomes_project 9 101900338 101913596 - MGP_AJ_P0094059 Uba5 protein_coding nonsense_mediated_decay MGP_AJ_T0094060.1 MGP_AJ_G0035184.1 mouse_genomes_project 9 101908126 101910996 - Uba5 protein_coding retained_intron MGP_AJ_T0091356.1 MGP_AJ_G0034358.1 mouse_genomes_project 9 15666666 15667720 - MGP_AJ_P0091356 Olfr24 protein_coding protein_coding MGP_AJ_T0101590.1 MGP_AJ_G0039556.1 mouse_genomes_project 9 100855538 100855668 - Gm22595 snoRNA snoRNA MGP_AJ_T0016106.1 MGP_AJ_G0014201.1 mouse_genomes_project 9 77636463 77636743 - processed_pseudogene processed_pseudogene MGP_AJ_T0005466.1 MGP_AJ_G0004621.1 mouse_genomes_project 9 64398833 64399669 + Gm17098 antisense antisense MGP_AJ_T0093802.1 MGP_AJ_G0035128.1 mouse_genomes_project 9 94470874 94541371 - MGP_AJ_P0093802 Zbtb38 protein_coding protein_coding MGP_AJ_T0093803.1 MGP_AJ_G0035128.1 mouse_genomes_project 9 94473511 94520317 - MGP_AJ_P0093803 Zbtb38 protein_coding protein_coding MGP_AJ_T0093804.1 MGP_AJ_G0035128.1 mouse_genomes_project 9 94474343 94508515 - MGP_AJ_P0093804 Zbtb38 protein_coding non_stop_decay MGP_AJ_T0093805.1 MGP_AJ_G0035128.1 mouse_genomes_project 9 94475483 94508965 - MGP_AJ_P0093805 Zbtb38 protein_coding protein_coding MGP_AJ_T0093806.1 MGP_AJ_G0035128.1 mouse_genomes_project 9 94476562 94508230 - MGP_AJ_P0093806 Zbtb38 protein_coding protein_coding MGP_AJ_T0093807.1 MGP_AJ_G0035128.1 mouse_genomes_project 9 94506874 94517679 - Zbtb38 protein_coding processed_transcript MGP_AJ_T0093808.1 MGP_AJ_G0035128.1 mouse_genomes_project 9 94518493 94541225 - Zbtb38 protein_coding retained_intron MGP_AJ_T0093809.1 MGP_AJ_G0035128.1 mouse_genomes_project 9 94518493 94519985 - Zbtb38 protein_coding processed_transcript MGP_AJ_T0093810.1 MGP_AJ_G0035128.1 mouse_genomes_project 9 94520102 94521412 - Zbtb38 protein_coding processed_transcript MGP_AJ_T0093811.1 MGP_AJ_G0035128.1 mouse_genomes_project 9 94520199 94521311 - Zbtb38 protein_coding retained_intron MGP_AJ_T0093812.1 MGP_AJ_G0035128.1 mouse_genomes_project 9 94535818 94541267 - Zbtb38 protein_coding retained_intron MGP_AJ_T0093813.1 MGP_AJ_G0035128.1 mouse_genomes_project 9 94536020 94541233 - Zbtb38 protein_coding processed_transcript MGP_AJ_T0011087.1 MGP_AJ_G0009209.1 mouse_genomes_project 9 102281476 102281551 + Mir2136 miRNA miRNA MGP_AJ_T0018582.1 MGP_AJ_G0015737.1 mouse_genomes_project 9 106039708 106044175 + 4930447F24Rik processed_transcript antisense MGP_AJ_T0018583.1 MGP_AJ_G0015737.1 mouse_genomes_project 9 106043125 106044838 + 4930447F24Rik processed_transcript antisense MGP_AJ_T0018584.1 MGP_AJ_G0015737.1 mouse_genomes_project 9 106043598 106043986 + 4930447F24Rik processed_transcript retained_intron MGP_AJ_T0093863.1 MGP_AJ_G0035141.1 mouse_genomes_project 9 96655573 96656525 + MGP_AJ_P0093863 protein_coding protein_coding MGP_AJ_T0092041.1 MGP_AJ_G0034667.1 mouse_genomes_project 9 41108552 41111108 + MGP_AJ_P0092041 Gm3898 protein_coding protein_coding MGP_AJ_T0005472.1 MGP_AJ_G0004626.1 mouse_genomes_project 9 70075286 70075976 - Gm27231 antisense antisense MGP_AJ_T0093643.1 MGP_AJ_G0035095.1 mouse_genomes_project 9 86629156 86640690 + MGP_AJ_P0093643 protein_coding protein_coding MGP_AJ_T0009217.1 MGP_AJ_G0007404.1 mouse_genomes_project 9 18617490 18626048 - Gm26511 lincRNA lincRNA MGP_AJ_T0002447.1 MGP_AJ_G0002356.1 mouse_genomes_project 9 101894364 101896537 - TEC TEC MGP_AJ_T0016162.1 MGP_AJ_G0014257.1 mouse_genomes_project 9 99280134 99280989 - processed_pseudogene processed_pseudogene MGP_AJ_T0005473.1 MGP_AJ_G0004627.1 mouse_genomes_project 9 70251387 70254402 - Gm27241 antisense antisense MGP_AJ_T0005474.1 MGP_AJ_G0004627.1 mouse_genomes_project 9 70251521 70254574 - Gm27241 antisense antisense MGP_AJ_T0002468.1 MGP_AJ_G0002377.1 mouse_genomes_project 9 108429432 108432813 - TEC TEC MGP_AJ_T0092494.1 MGP_AJ_G0034812.1 mouse_genomes_project 9 52204954 52253714 + MGP_AJ_P0092494 Ireb2 protein_coding protein_coding MGP_AJ_T0005517.1 MGP_AJ_G0004657.1 mouse_genomes_project 9 103197077 103207593 + Gm15619 antisense antisense MGP_AJ_T0101880.1 MGP_AJ_G0039756.1 mouse_genomes_project 9 76207818 76209584 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0101881.1 MGP_AJ_G0039756.1 mouse_genomes_project 9 76208079 76210158 + transcribed_processed_pseudogene processed_transcript MGP_AJ_T0101882.1 MGP_AJ_G0039756.1 mouse_genomes_project 9 76208630 76210991 + transcribed_processed_pseudogene processed_transcript MGP_AJ_T0091975.1 MGP_AJ_G0034646.1 mouse_genomes_project 9 37457310 37479466 + MGP_AJ_P0091975 Scn3b protein_coding protein_coding MGP_AJ_T0091976.1 MGP_AJ_G0034646.1 mouse_genomes_project 9 37457328 37467573 + Scn3b protein_coding processed_transcript MGP_AJ_T0091977.1 MGP_AJ_G0034646.1 mouse_genomes_project 9 37457339 37466230 + Scn3b protein_coding retained_intron MGP_AJ_T0091978.1 MGP_AJ_G0034646.1 mouse_genomes_project 9 37457488 37465476 + Scn3b protein_coding retained_intron MGP_AJ_T0091979.1 MGP_AJ_G0034646.1 mouse_genomes_project 9 37457746 37479436 + MGP_AJ_P0091979 Scn3b protein_coding protein_coding MGP_AJ_T0091850.1 MGP_AJ_G0034544.1 mouse_genomes_project 9 34532393 34568581 + MGP_AJ_P0091850 Msantd2 protein_coding protein_coding MGP_AJ_T0091286.1 MGP_AJ_G0034333.1 mouse_genomes_project 9 11679659 11682415 - MGP_AJ_P0091286 Ankrd49 protein_coding protein_coding MGP_AJ_T0094920.1 MGP_AJ_G0035322.1 mouse_genomes_project 9 108138120 108171195 - MGP_AJ_P0094920 Dhx30 protein_coding protein_coding MGP_AJ_T0094921.1 MGP_AJ_G0035322.1 mouse_genomes_project 9 108138120 108154862 - MGP_AJ_P0094921 Dhx30 protein_coding protein_coding MGP_AJ_T0094922.1 MGP_AJ_G0035322.1 mouse_genomes_project 9 108138120 108171603 - MGP_AJ_P0094922 Dhx30 protein_coding protein_coding MGP_AJ_T0094923.1 MGP_AJ_G0035322.1 mouse_genomes_project 9 108138120 108171206 - MGP_AJ_P0094923 Dhx30 protein_coding protein_coding MGP_AJ_T0094924.1 MGP_AJ_G0035322.1 mouse_genomes_project 9 108138121 108163784 - Dhx30 protein_coding retained_intron MGP_AJ_T0094925.1 MGP_AJ_G0035322.1 mouse_genomes_project 9 108138121 108171210 - MGP_AJ_P0094925 Dhx30 protein_coding protein_coding MGP_AJ_T0094926.1 MGP_AJ_G0035322.1 mouse_genomes_project 9 108138121 108138792 - MGP_AJ_P0094926 Dhx30 protein_coding protein_coding MGP_AJ_T0094927.1 MGP_AJ_G0035322.1 mouse_genomes_project 9 108138121 108168850 - MGP_AJ_P0094927 Dhx30 protein_coding protein_coding MGP_AJ_T0094928.1 MGP_AJ_G0035322.1 mouse_genomes_project 9 108138121 108138851 - MGP_AJ_P0094928 Dhx30 protein_coding protein_coding MGP_AJ_T0094929.1 MGP_AJ_G0035322.1 mouse_genomes_project 9 108138122 108171184 - MGP_AJ_P0094929 Dhx30 protein_coding protein_coding MGP_AJ_T0094930.1 MGP_AJ_G0035322.1 mouse_genomes_project 9 108138123 108171108 - MGP_AJ_P0094930 Dhx30 protein_coding protein_coding MGP_AJ_T0094931.1 MGP_AJ_G0035322.1 mouse_genomes_project 9 108138318 108139316 - MGP_AJ_P0094931 Dhx30 protein_coding protein_coding MGP_AJ_T0094932.1 MGP_AJ_G0035322.1 mouse_genomes_project 9 108140119 108141255 - Dhx30 protein_coding retained_intron MGP_AJ_T0094933.1 MGP_AJ_G0035322.1 mouse_genomes_project 9 108141743 108145267 - Dhx30 protein_coding retained_intron MGP_AJ_T0094934.1 MGP_AJ_G0035322.1 mouse_genomes_project 9 108143596 108164368 - Dhx30 protein_coding retained_intron MGP_AJ_T0094935.1 MGP_AJ_G0035322.1 mouse_genomes_project 9 108146755 108154814 - MGP_AJ_P0094935 Dhx30 protein_coding nonsense_mediated_decay MGP_AJ_T0094936.1 MGP_AJ_G0035322.1 mouse_genomes_project 9 108146863 108170557 - MGP_AJ_P0094936 Dhx30 protein_coding protein_coding MGP_AJ_T0094937.1 MGP_AJ_G0035322.1 mouse_genomes_project 9 108146905 108154813 - MGP_AJ_P0094937 Dhx30 protein_coding protein_coding MGP_AJ_T0094938.1 MGP_AJ_G0035322.1 mouse_genomes_project 9 108152525 108169079 - MGP_AJ_P0094938 Dhx30 protein_coding protein_coding MGP_AJ_T0094939.1 MGP_AJ_G0035322.1 mouse_genomes_project 9 108152613 108170860 - MGP_AJ_P0094939 Dhx30 protein_coding protein_coding MGP_AJ_T0094940.1 MGP_AJ_G0035322.1 mouse_genomes_project 9 108162902 108171192 - MGP_AJ_P0094940 Dhx30 protein_coding protein_coding MGP_AJ_T0094941.1 MGP_AJ_G0035322.1 mouse_genomes_project 9 108166849 108171204 - Dhx30 protein_coding processed_transcript MGP_AJ_T0094942.1 MGP_AJ_G0035322.1 mouse_genomes_project 9 108167948 108171147 - Dhx30 protein_coding retained_intron MGP_AJ_T0094943.1 MGP_AJ_G0035322.1 mouse_genomes_project 9 108168886 108171405 - Dhx30 protein_coding processed_transcript MGP_AJ_T0094944.1 MGP_AJ_G0035322.1 mouse_genomes_project 9 108169194 108170881 - Dhx30 protein_coding processed_transcript MGP_AJ_T0094945.1 MGP_AJ_G0035322.1 mouse_genomes_project 9 108169263 108171158 - Dhx30 protein_coding processed_transcript MGP_AJ_T0091375.1 MGP_AJ_G0034377.1 mouse_genomes_project 9 16479493 16480485 + MGP_AJ_P0091375 Olfr855 protein_coding protein_coding MGP_AJ_T0093434.1 MGP_AJ_G0035054.1 mouse_genomes_project 9 76396151 76499467 + MGP_AJ_P0093434 Cd109 protein_coding protein_coding MGP_AJ_T0093435.1 MGP_AJ_G0035054.1 mouse_genomes_project 9 76396368 76398706 + Cd109 protein_coding processed_transcript MGP_AJ_T0093436.1 MGP_AJ_G0035054.1 mouse_genomes_project 9 76396487 76498272 + MGP_AJ_P0093436 Cd109 protein_coding unknown_likely_coding MGP_AJ_T0091437.1 MGP_AJ_G0034402.1 mouse_genomes_project 9 17515045 17530070 + MGP_AJ_P0091437 Pin1 protein_coding protein_coding MGP_AJ_T0100308.1 MGP_AJ_G0038274.1 mouse_genomes_project 9 104987673 104987780 + Gm22454 snRNA snRNA MGP_AJ_T0101580.1 MGP_AJ_G0039546.1 mouse_genomes_project 9 84491963 84492091 + Gm22138 snoRNA snoRNA MGP_AJ_T0009293.1 MGP_AJ_G0007467.1 mouse_genomes_project 9 86016934 86020076 + Gm28231 lincRNA lincRNA MGP_AJ_T0093382.1 MGP_AJ_G0035034.1 mouse_genomes_project 9 75358784 75382199 + MGP_AJ_P0093382 Klhl31 protein_coding protein_coding MGP_AJ_T0002349.1 MGP_AJ_G0002259.1 mouse_genomes_project 9 29451970 29455009 - TEC TEC MGP_AJ_T0092432.1 MGP_AJ_G0034788.1 mouse_genomes_project 9 50466750 50615573 - MGP_AJ_P0092432 Ddx10 protein_coding protein_coding MGP_AJ_T0092353.1 MGP_AJ_G0034767.1 mouse_genomes_project 9 48047149 48085282 - MGP_AJ_P0092353 Dixdc1 protein_coding unknown_likely_coding MGP_AJ_T0092354.1 MGP_AJ_G0034767.1 mouse_genomes_project 9 48047719 48115122 - MGP_AJ_P0092354 Dixdc1 protein_coding protein_coding MGP_AJ_T0092355.1 MGP_AJ_G0034767.1 mouse_genomes_project 9 48047723 48086063 - Dixdc1 protein_coding retained_intron MGP_AJ_T0092356.1 MGP_AJ_G0034767.1 mouse_genomes_project 9 48047723 48115214 - MGP_AJ_P0092356 Dixdc1 protein_coding protein_coding MGP_AJ_T0092357.1 MGP_AJ_G0034767.1 mouse_genomes_project 9 48051162 48083460 - Dixdc1 protein_coding processed_transcript MGP_AJ_T0092358.1 MGP_AJ_G0034767.1 mouse_genomes_project 9 48051162 48126681 - MGP_AJ_P0092358 Dixdc1 protein_coding protein_coding MGP_AJ_T0092359.1 MGP_AJ_G0034767.1 mouse_genomes_project 9 48051226 48071130 - Dixdc1 protein_coding retained_intron MGP_AJ_T0092360.1 MGP_AJ_G0034767.1 mouse_genomes_project 9 48062442 48080493 - MGP_AJ_P0092360 Dixdc1 protein_coding protein_coding MGP_AJ_T0092361.1 MGP_AJ_G0034767.1 mouse_genomes_project 9 48076650 48086825 - Dixdc1 protein_coding processed_transcript MGP_AJ_T0092362.1 MGP_AJ_G0034767.1 mouse_genomes_project 9 48080161 48085337 - Dixdc1 protein_coding retained_intron MGP_AJ_T0092363.1 MGP_AJ_G0034767.1 mouse_genomes_project 9 48080339 48084473 - Dixdc1 protein_coding processed_transcript MGP_AJ_T0092364.1 MGP_AJ_G0034767.1 mouse_genomes_project 9 48096816 48126611 - MGP_AJ_P0092364 Dixdc1 protein_coding protein_coding MGP_AJ_T0092365.1 MGP_AJ_G0034767.1 mouse_genomes_project 9 48097319 48115085 - MGP_AJ_P0092365 Dixdc1 protein_coding protein_coding MGP_AJ_T0092335.1 MGP_AJ_G0034764.1 mouse_genomes_project 9 47988885 48001645 - MGP_AJ_P0092335 AU019823 protein_coding protein_coding MGP_AJ_T0092336.1 MGP_AJ_G0034764.1 mouse_genomes_project 9 47988889 48001645 - MGP_AJ_P0092336 AU019823 protein_coding protein_coding MGP_AJ_T0092337.1 MGP_AJ_G0034764.1 mouse_genomes_project 9 47991112 48001448 - MGP_AJ_P0092337 AU019823 protein_coding protein_coding MGP_AJ_T0092338.1 MGP_AJ_G0034764.1 mouse_genomes_project 9 47991221 48001462 - MGP_AJ_P0092338 AU019823 protein_coding protein_coding MGP_AJ_T0092339.1 MGP_AJ_G0034764.1 mouse_genomes_project 9 47991254 48001445 - MGP_AJ_P0092339 AU019823 protein_coding protein_coding MGP_AJ_T0002395.1 MGP_AJ_G0002305.1 mouse_genomes_project 9 83109228 83111078 - TEC TEC MGP_AJ_T0093890.1 MGP_AJ_G0035150.1 mouse_genomes_project 9 97194541 97247043 - MGP_AJ_P0093890 Mras protein_coding protein_coding MGP_AJ_T0093891.1 MGP_AJ_G0035150.1 mouse_genomes_project 9 97197048 97246543 - MGP_AJ_P0093891 Mras protein_coding protein_coding MGP_AJ_T0093892.1 MGP_AJ_G0035150.1 mouse_genomes_project 9 97197099 97235329 - MGP_AJ_P0093892 Mras protein_coding protein_coding MGP_AJ_T0093893.1 MGP_AJ_G0035150.1 mouse_genomes_project 9 97198853 97203816 - Mras protein_coding retained_intron MGP_AJ_T0093894.1 MGP_AJ_G0035150.1 mouse_genomes_project 9 97201960 97210650 - Mras protein_coding retained_intron MGP_AJ_T0093895.1 MGP_AJ_G0035150.1 mouse_genomes_project 9 97202121 97229439 - MGP_AJ_P0093895 Mras protein_coding protein_coding MGP_AJ_T0095234.1 MGP_AJ_G0035388.1 mouse_genomes_project 9 117143550 117261015 + MGP_AJ_P0095234 Ctdspl protein_coding protein_coding MGP_AJ_T0095235.1 MGP_AJ_G0035388.1 mouse_genomes_project 9 117143959 117257673 + MGP_AJ_P0095235 Ctdspl protein_coding protein_coding MGP_AJ_T0095236.1 MGP_AJ_G0035388.1 mouse_genomes_project 9 117146963 117250672 + Ctdspl protein_coding processed_transcript MGP_AJ_T0095237.1 MGP_AJ_G0035388.1 mouse_genomes_project 9 117250044 117257933 + Ctdspl protein_coding retained_intron MGP_AJ_T0101571.1 MGP_AJ_G0039537.1 mouse_genomes_project 9 67768286 67768417 - Gm24257 snoRNA snoRNA MGP_AJ_T0091386.1 MGP_AJ_G0034388.1 mouse_genomes_project 9 17015783 17025193 + MGP_AJ_P0091386 Olfr869 protein_coding protein_coding MGP_AJ_T0091463.1 MGP_AJ_G0034417.1 mouse_genomes_project 9 17947711 17953811 - MGP_AJ_P0091463 Fdx1l protein_coding protein_coding MGP_AJ_T0101595.1 MGP_AJ_G0039561.1 mouse_genomes_project 9 106718858 106719005 - Gm23034 snoRNA snoRNA MGP_AJ_T0093685.1 MGP_AJ_G0035103.1 mouse_genomes_project 9 87992162 88060986 - MGP_AJ_P0093685 Tbc1d2b protein_coding protein_coding MGP_AJ_T0093686.1 MGP_AJ_G0035103.1 mouse_genomes_project 9 88019193 88061021 - MGP_AJ_P0093686 Tbc1d2b protein_coding nonsense_mediated_decay MGP_AJ_T0093687.1 MGP_AJ_G0035103.1 mouse_genomes_project 9 88028391 88060988 - MGP_AJ_P0093687 Tbc1d2b protein_coding protein_coding MGP_AJ_T0093688.1 MGP_AJ_G0035103.1 mouse_genomes_project 9 88031278 88046072 - Tbc1d2b protein_coding processed_transcript MGP_AJ_T0095323.1 MGP_AJ_G0035418.1 mouse_genomes_project 9 118790816 118793954 + MGP_AJ_P0095323 Rpl14 protein_coding protein_coding MGP_AJ_T0092402.1 MGP_AJ_G0034775.1 mouse_genomes_project 9 48280875 48397368 - MGP_AJ_P0092402 Sik2 protein_coding protein_coding MGP_AJ_T0092403.1 MGP_AJ_G0034775.1 mouse_genomes_project 9 48280875 48397268 - MGP_AJ_P0092403 Sik2 protein_coding nonsense_mediated_decay MGP_AJ_T0092404.1 MGP_AJ_G0034775.1 mouse_genomes_project 9 48280875 48397231 - MGP_AJ_P0092404 Sik2 protein_coding protein_coding MGP_AJ_T0092405.1 MGP_AJ_G0034775.1 mouse_genomes_project 9 48280875 48397231 - MGP_AJ_P0092405 Sik2 protein_coding protein_coding MGP_AJ_T0092406.1 MGP_AJ_G0034775.1 mouse_genomes_project 9 48316718 48397321 - Sik2 protein_coding processed_transcript MGP_AJ_T0092407.1 MGP_AJ_G0034775.1 mouse_genomes_project 9 48319016 48397279 - Sik2 protein_coding processed_transcript MGP_AJ_T0092408.1 MGP_AJ_G0034775.1 mouse_genomes_project 9 48322290 48397295 - Sik2 protein_coding retained_intron MGP_AJ_T0092409.1 MGP_AJ_G0034775.1 mouse_genomes_project 9 48383883 48397306 - Sik2 protein_coding retained_intron MGP_AJ_T0094209.1 MGP_AJ_G0035210.1 mouse_genomes_project 9 104344334 104348123 + MGP_AJ_P0094209 Abhd14b protein_coding protein_coding MGP_AJ_T0094210.1 MGP_AJ_G0035210.1 mouse_genomes_project 9 104344338 104348148 + MGP_AJ_P0094210 Abhd14b protein_coding protein_coding MGP_AJ_T0094211.1 MGP_AJ_G0035210.1 mouse_genomes_project 9 104344751 104348642 + MGP_AJ_P0094211 Abhd14b protein_coding protein_coding MGP_AJ_T0094212.1 MGP_AJ_G0035210.1 mouse_genomes_project 9 104345164 104349452 + MGP_AJ_P0094212 Abhd14b protein_coding protein_coding MGP_AJ_T0094213.1 MGP_AJ_G0035210.1 mouse_genomes_project 9 104345199 104348610 + MGP_AJ_P0094213 Abhd14b protein_coding protein_coding MGP_AJ_T0094214.1 MGP_AJ_G0035210.1 mouse_genomes_project 9 104345238 104348582 + MGP_AJ_P0094214 Abhd14b protein_coding protein_coding MGP_AJ_T0101552.1 MGP_AJ_G0039518.1 mouse_genomes_project 9 36726105 36726232 - Gm24278 snoRNA snoRNA MGP_AJ_T0092467.1 MGP_AJ_G0034803.1 mouse_genomes_project 9 51630667 51682295 + MGP_AJ_P0092467 Gldn protein_coding protein_coding MGP_AJ_T0091235.1 MGP_AJ_G0034318.1 mouse_genomes_project 9 10212251 10215203 - MGP_AJ_P0091235 Jrkl protein_coding protein_coding MGP_AJ_T0091568.1 MGP_AJ_G0034457.1 mouse_genomes_project 9 19033556 19038689 - MGP_AJ_P0091568 Acp5 protein_coding protein_coding MGP_AJ_T0091569.1 MGP_AJ_G0034457.1 mouse_genomes_project 9 19033556 19042480 - MGP_AJ_P0091569 Acp5 protein_coding protein_coding MGP_AJ_T0091570.1 MGP_AJ_G0034457.1 mouse_genomes_project 9 19033556 19037422 - MGP_AJ_P0091570 Acp5 protein_coding protein_coding MGP_AJ_T0002354.1 MGP_AJ_G0002264.1 mouse_genomes_project 9 31397253 31420159 - TEC TEC MGP_AJ_T0091390.1 MGP_AJ_G0034392.1 mouse_genomes_project 9 17164566 17168864 + MGP_AJ_P0091390 Olfr39 protein_coding protein_coding MGP_AJ_T0091644.1 MGP_AJ_G0034488.1 mouse_genomes_project 9 24713868 24714612 + Opcml protein_coding processed_transcript MGP_AJ_T0091645.1 MGP_AJ_G0034488.1 mouse_genomes_project 9 24714040 25860421 + MGP_AJ_P0091645 Opcml protein_coding protein_coding MGP_AJ_T0091646.1 MGP_AJ_G0034488.1 mouse_genomes_project 9 24714395 24949607 + Opcml protein_coding processed_transcript MGP_AJ_T0091647.1 MGP_AJ_G0034488.1 mouse_genomes_project 9 25327431 25330234 + Opcml protein_coding processed_transcript MGP_AJ_T0091648.1 MGP_AJ_G0034488.1 mouse_genomes_project 9 25328079 25856092 + MGP_AJ_P0091648 Opcml protein_coding protein_coding MGP_AJ_T0091649.1 MGP_AJ_G0034488.1 mouse_genomes_project 9 25328365 25747030 + Opcml protein_coding retained_intron MGP_AJ_T0091650.1 MGP_AJ_G0034488.1 mouse_genomes_project 9 25328451 25581242 + Opcml protein_coding processed_transcript MGP_AJ_T0091651.1 MGP_AJ_G0034488.1 mouse_genomes_project 9 25593006 25606631 + Opcml protein_coding processed_transcript MGP_AJ_T0018573.1 MGP_AJ_G0015733.1 mouse_genomes_project 9 96751499 96757066 - Foxl2os processed_transcript lincRNA MGP_AJ_T0018574.1 MGP_AJ_G0015733.1 mouse_genomes_project 9 96755556 96756051 - Foxl2os processed_transcript retained_intron MGP_AJ_T0018575.1 MGP_AJ_G0015733.1 mouse_genomes_project 9 96755638 96756565 - Foxl2os processed_transcript retained_intron MGP_AJ_T0093645.1 MGP_AJ_G0035096.1 mouse_genomes_project 9 87376024 87412553 - MGP_AJ_P0093645 AF529169 protein_coding protein_coding MGP_AJ_T0093646.1 MGP_AJ_G0035096.1 mouse_genomes_project 9 87379917 87392836 - MGP_AJ_P0093646 AF529169 protein_coding nonsense_mediated_decay MGP_AJ_T0094342.1 MGP_AJ_G0035235.1 mouse_genomes_project 9 105444285 105448286 + MGP_AJ_P0094342 Zmynd10 protein_coding protein_coding MGP_AJ_T0094343.1 MGP_AJ_G0035235.1 mouse_genomes_project 9 105444291 105444857 + Zmynd10 protein_coding processed_transcript MGP_AJ_T0094344.1 MGP_AJ_G0035235.1 mouse_genomes_project 9 105444441 105448286 + MGP_AJ_P0094344 Zmynd10 protein_coding nonsense_mediated_decay MGP_AJ_T0094345.1 MGP_AJ_G0035235.1 mouse_genomes_project 9 105446134 105447182 + Zmynd10 protein_coding retained_intron MGP_AJ_T0094346.1 MGP_AJ_G0035235.1 mouse_genomes_project 9 105447455 105448186 + Zmynd10 protein_coding retained_intron MGP_AJ_T0016055.1 MGP_AJ_G0014150.1 mouse_genomes_project 9 31160006 31160568 + processed_pseudogene processed_pseudogene MGP_AJ_T0094986.1 MGP_AJ_G0035330.1 mouse_genomes_project 9 108536074 108549416 + MGP_AJ_P0094986 Kif9 protein_coding protein_coding MGP_AJ_T0094987.1 MGP_AJ_G0035330.1 mouse_genomes_project 9 108536110 108584414 + MGP_AJ_P0094987 Kif9 protein_coding protein_coding MGP_AJ_T0094988.1 MGP_AJ_G0035330.1 mouse_genomes_project 9 108536110 108584555 + MGP_AJ_P0094988 Kif9 protein_coding protein_coding MGP_AJ_T0094989.1 MGP_AJ_G0035330.1 mouse_genomes_project 9 108536110 108581507 + MGP_AJ_P0094989 Kif9 protein_coding protein_coding MGP_AJ_T0094990.1 MGP_AJ_G0035330.1 mouse_genomes_project 9 108537321 108583213 + MGP_AJ_P0094990 Kif9 protein_coding protein_coding MGP_AJ_T0100282.1 MGP_AJ_G0038248.1 mouse_genomes_project 9 66057002 66057109 - Gm22169 snRNA snRNA MGP_AJ_T0009280.1 MGP_AJ_G0007456.1 mouse_genomes_project 9 74750189 74755465 + Gm19541 lincRNA lincRNA MGP_AJ_T0092627.1 MGP_AJ_G0034856.1 mouse_genomes_project 9 55064229 55071567 - MGP_AJ_P0092627 Cyp1a2 protein_coding protein_coding MGP_AJ_T0094653.1 MGP_AJ_G0035280.1 mouse_genomes_project 9 106403639 106414707 + MGP_AJ_P0094653 Usp19 protein_coding protein_coding MGP_AJ_T0094654.1 MGP_AJ_G0035280.1 mouse_genomes_project 9 106403877 106415345 + MGP_AJ_P0094654 Usp19 protein_coding protein_coding MGP_AJ_T0094655.1 MGP_AJ_G0035280.1 mouse_genomes_project 9 106403882 106415325 + MGP_AJ_P0094655 Usp19 protein_coding protein_coding MGP_AJ_T0094656.1 MGP_AJ_G0035280.1 mouse_genomes_project 9 106403882 106415325 + MGP_AJ_P0094656 Usp19 protein_coding protein_coding MGP_AJ_T0094657.1 MGP_AJ_G0035280.1 mouse_genomes_project 9 106403893 106415325 + MGP_AJ_P0094657 Usp19 protein_coding protein_coding MGP_AJ_T0094658.1 MGP_AJ_G0035280.1 mouse_genomes_project 9 106405700 106407932 + Usp19 protein_coding retained_intron MGP_AJ_T0094659.1 MGP_AJ_G0035280.1 mouse_genomes_project 9 106406474 106407242 + MGP_AJ_P0094659 Usp19 protein_coding protein_coding MGP_AJ_T0094660.1 MGP_AJ_G0035280.1 mouse_genomes_project 9 106407349 106408202 + Usp19 protein_coding retained_intron MGP_AJ_T0094661.1 MGP_AJ_G0035280.1 mouse_genomes_project 9 106407378 106408469 + Usp19 protein_coding retained_intron MGP_AJ_T0094662.1 MGP_AJ_G0035280.1 mouse_genomes_project 9 106407639 106414707 + MGP_AJ_P0094662 Usp19 protein_coding protein_coding MGP_AJ_T0094663.1 MGP_AJ_G0035280.1 mouse_genomes_project 9 106408544 106409471 + Usp19 protein_coding retained_intron MGP_AJ_T0094664.1 MGP_AJ_G0035280.1 mouse_genomes_project 9 106409354 106411565 + Usp19 protein_coding retained_intron MGP_AJ_T0094665.1 MGP_AJ_G0035280.1 mouse_genomes_project 9 106409996 106411727 + Usp19 protein_coding retained_intron MGP_AJ_T0094666.1 MGP_AJ_G0035280.1 mouse_genomes_project 9 106410096 106412205 + MGP_AJ_P0094666 Usp19 protein_coding protein_coding MGP_AJ_T0094667.1 MGP_AJ_G0035280.1 mouse_genomes_project 9 106411710 106412628 + Usp19 protein_coding retained_intron MGP_AJ_T0094668.1 MGP_AJ_G0035280.1 mouse_genomes_project 9 106413157 106414705 + Usp19 protein_coding retained_intron MGP_AJ_T0009333.1 MGP_AJ_G0007499.1 mouse_genomes_project 9 105246125 105246899 - 4930429P21Rik lincRNA lincRNA MGP_AJ_T0009334.1 MGP_AJ_G0007499.1 mouse_genomes_project 9 105246634 105248854 - 4930429P21Rik lincRNA lincRNA MGP_AJ_T0091395.1 MGP_AJ_G0034396.1 mouse_genomes_project 9 17291684 17321572 - MGP_AJ_P0091395 protein_coding unknown_likely_coding MGP_AJ_T0091396.1 MGP_AJ_G0034396.1 mouse_genomes_project 9 17295409 17321545 - protein_coding retained_intron MGP_AJ_T0091397.1 MGP_AJ_G0034396.1 mouse_genomes_project 9 17297441 17321577 - protein_coding retained_intron MGP_AJ_T0091398.1 MGP_AJ_G0034396.1 mouse_genomes_project 9 17298678 17301893 - protein_coding processed_transcript MGP_AJ_T0091399.1 MGP_AJ_G0034396.1 mouse_genomes_project 9 17302546 17321750 - protein_coding retained_intron MGP_AJ_T0091400.1 MGP_AJ_G0034396.1 mouse_genomes_project 9 17304835 17321415 - MGP_AJ_P0091400 protein_coding protein_coding MGP_AJ_T0002407.1 MGP_AJ_G0002316.1 mouse_genomes_project 9 87055654 87059533 - TEC TEC MGP_AJ_T0094215.1 MGP_AJ_G0035211.1 mouse_genomes_project 9 104349816 104357570 + MGP_AJ_P0094215 Pcbp4 protein_coding protein_coding MGP_AJ_T0094216.1 MGP_AJ_G0035211.1 mouse_genomes_project 9 104349932 104356554 + Pcbp4 protein_coding processed_transcript MGP_AJ_T0094217.1 MGP_AJ_G0035211.1 mouse_genomes_project 9 104350331 104351315 + Pcbp4 protein_coding processed_transcript MGP_AJ_T0094218.1 MGP_AJ_G0035211.1 mouse_genomes_project 9 104350365 104360322 + MGP_AJ_P0094218 Pcbp4 protein_coding protein_coding MGP_AJ_T0094219.1 MGP_AJ_G0035211.1 mouse_genomes_project 9 104350395 104356996 + Pcbp4 protein_coding retained_intron MGP_AJ_T0094220.1 MGP_AJ_G0035211.1 mouse_genomes_project 9 104350408 104358249 + MGP_AJ_P0094220 Pcbp4 protein_coding protein_coding MGP_AJ_T0094221.1 MGP_AJ_G0035211.1 mouse_genomes_project 9 104352161 104352917 + Pcbp4 protein_coding processed_transcript MGP_AJ_T0094222.1 MGP_AJ_G0035211.1 mouse_genomes_project 9 104352574 104357554 + MGP_AJ_P0094222 Pcbp4 protein_coding protein_coding MGP_AJ_T0094223.1 MGP_AJ_G0035211.1 mouse_genomes_project 9 104356873 104357344 + Pcbp4 protein_coding retained_intron MGP_AJ_T0094224.1 MGP_AJ_G0035211.1 mouse_genomes_project 9 104357135 104357812 + MGP_AJ_P0094224 Pcbp4 protein_coding protein_coding MGP_AJ_T0094225.1 MGP_AJ_G0035211.1 mouse_genomes_project 9 104357531 104359859 + MGP_AJ_P0094225 Pcbp4 protein_coding nonsense_mediated_decay MGP_AJ_T0094226.1 MGP_AJ_G0035211.1 mouse_genomes_project 9 104357747 104358486 + Pcbp4 protein_coding retained_intron MGP_AJ_T0094227.1 MGP_AJ_G0035211.1 mouse_genomes_project 9 104357772 104359270 + MGP_AJ_P0094227 Pcbp4 protein_coding protein_coding MGP_AJ_T0094228.1 MGP_AJ_G0035211.1 mouse_genomes_project 9 104358067 104358736 + Pcbp4 protein_coding processed_transcript MGP_AJ_T0094229.1 MGP_AJ_G0035211.1 mouse_genomes_project 9 104358194 104360005 + MGP_AJ_P0094229 Pcbp4 protein_coding protein_coding MGP_AJ_T0094230.1 MGP_AJ_G0035211.1 mouse_genomes_project 9 104358377 104358996 + Pcbp4 protein_coding retained_intron MGP_AJ_T0002410.1 MGP_AJ_G0002319.1 mouse_genomes_project 9 89075015 89077489 - TEC TEC MGP_AJ_T0091869.1 MGP_AJ_G0034554.1 mouse_genomes_project 9 34933940 34934876 + MGP_AJ_P0091869 Olfr877 protein_coding protein_coding MGP_AJ_T0092293.1 MGP_AJ_G0034741.1 mouse_genomes_project 9 45843985 45856049 - MGP_AJ_P0092293 Rexo2 protein_coding protein_coding MGP_AJ_T0091903.1 MGP_AJ_G0034587.1 mouse_genomes_project 9 35812884 35813814 - MGP_AJ_P0091903 Olfr917 protein_coding protein_coding MGP_AJ_T0101544.1 MGP_AJ_G0039510.1 mouse_genomes_project 9 21278055 21278150 + Gm22380 snoRNA snoRNA MGP_AJ_T0093996.1 MGP_AJ_G0035170.1 mouse_genomes_project 9 100576330 100593243 + MGP_AJ_P0093996 Gm5627 protein_coding protein_coding MGP_AJ_T0092333.1 MGP_AJ_G0034762.1 mouse_genomes_project 9 47979983 47987495 - MGP_AJ_P0092333 Sdhd protein_coding protein_coding MGP_AJ_T0011058.1 MGP_AJ_G0009180.1 mouse_genomes_project 9 42595004 42595069 - Mir7086 miRNA miRNA MGP_AJ_T0092547.1 MGP_AJ_G0034827.1 mouse_genomes_project 9 53385080 53405411 + MGP_AJ_P0092547 Rcn2 protein_coding nonsense_mediated_decay MGP_AJ_T0092548.1 MGP_AJ_G0034827.1 mouse_genomes_project 9 53385092 53402606 + MGP_AJ_P0092548 Rcn2 protein_coding protein_coding MGP_AJ_T0092549.1 MGP_AJ_G0034827.1 mouse_genomes_project 9 53385105 53387463 + Rcn2 protein_coding retained_intron MGP_AJ_T0092550.1 MGP_AJ_G0034827.1 mouse_genomes_project 9 53385120 53396643 + Rcn2 protein_coding retained_intron MGP_AJ_T0093718.1 MGP_AJ_G0035111.1 mouse_genomes_project 9 90359459 90427070 + MGP_AJ_P0093718 Plod2 protein_coding protein_coding MGP_AJ_T0093719.1 MGP_AJ_G0035111.1 mouse_genomes_project 9 90359500 90427062 + MGP_AJ_P0093719 Plod2 protein_coding protein_coding MGP_AJ_T0093720.1 MGP_AJ_G0035111.1 mouse_genomes_project 9 90393190 90410301 + Plod2 protein_coding retained_intron MGP_AJ_T0093721.1 MGP_AJ_G0035111.1 mouse_genomes_project 9 90413961 90419681 + Plod2 protein_coding retained_intron MGP_AJ_T0093722.1 MGP_AJ_G0035111.1 mouse_genomes_project 9 90419956 90421232 + Plod2 protein_coding retained_intron MGP_AJ_T0101534.1 MGP_AJ_G0039500.1 mouse_genomes_project 9 12230665 12230802 + Gm25791 snoRNA snoRNA MGP_AJ_T0092991.1 MGP_AJ_G0034951.1 mouse_genomes_project 9 63612422 63616978 - MGP_AJ_P0092991 Snx22 protein_coding protein_coding MGP_AJ_T0018585.1 MGP_AJ_G0015738.1 mouse_genomes_project 9 106747589 106748750 - Gm35025 processed_transcript lincRNA MGP_AJ_T0018586.1 MGP_AJ_G0015738.1 mouse_genomes_project 9 106747721 106748471 - Gm35025 processed_transcript lincRNA MGP_AJ_T0018587.1 MGP_AJ_G0015738.1 mouse_genomes_project 9 106747818 106748513 - Gm35025 processed_transcript TEC MGP_AJ_T0100272.1 MGP_AJ_G0038238.1 mouse_genomes_project 9 52898567 52898658 - Gm23407 snRNA snRNA MGP_AJ_T0092334.1 MGP_AJ_G0034763.1 mouse_genomes_project 9 47987546 47988966 + MGP_AJ_P0092334 Timm8b protein_coding protein_coding MGP_AJ_T0092632.1 MGP_AJ_G0034859.1 mouse_genomes_project 9 55140979 55156690 - MGP_AJ_P0092632 Clk3 protein_coding protein_coding MGP_AJ_T0018562.1 MGP_AJ_G0015729.1 mouse_genomes_project 9 86342601 86656411 - processed_transcript antisense MGP_AJ_T0018563.1 MGP_AJ_G0015729.1 mouse_genomes_project 9 86371512 86375110 - processed_transcript antisense MGP_AJ_T0092429.1 MGP_AJ_G0034786.1 mouse_genomes_project 9 49497069 49555237 - MGP_AJ_P0092429 Zc3h12c protein_coding protein_coding MGP_AJ_T0092430.1 MGP_AJ_G0034786.1 mouse_genomes_project 9 49500487 49555651 - MGP_AJ_P0092430 Zc3h12c protein_coding unknown_likely_coding MGP_AJ_T0092495.1 MGP_AJ_G0034813.1 mouse_genomes_project 9 52259230 52289052 + MGP_AJ_P0092495 Hykk protein_coding protein_coding MGP_AJ_T0092496.1 MGP_AJ_G0034813.1 mouse_genomes_project 9 52259258 52270198 + Hykk protein_coding retained_intron MGP_AJ_T0092497.1 MGP_AJ_G0034813.1 mouse_genomes_project 9 52259259 52277291 + Hykk protein_coding retained_intron MGP_AJ_T0092498.1 MGP_AJ_G0034813.1 mouse_genomes_project 9 52259294 52261188 + Hykk protein_coding processed_transcript MGP_AJ_T0005482.1 MGP_AJ_G0004635.1 mouse_genomes_project 9 79368833 79381888 + D430036J16Rik antisense antisense MGP_AJ_T0005483.1 MGP_AJ_G0004635.1 mouse_genomes_project 9 79369212 79382415 + D430036J16Rik antisense antisense MGP_AJ_T0005484.1 MGP_AJ_G0004635.1 mouse_genomes_project 9 79369315 79381454 + D430036J16Rik antisense antisense MGP_AJ_T0005485.1 MGP_AJ_G0004635.1 mouse_genomes_project 9 79369640 79382344 + D430036J16Rik antisense antisense MGP_AJ_T0005486.1 MGP_AJ_G0004635.1 mouse_genomes_project 9 79369700 79381611 + D430036J16Rik antisense antisense MGP_AJ_T0009306.1 MGP_AJ_G0007477.1 mouse_genomes_project 9 90696230 90716904 + Gm28054 lincRNA lincRNA MGP_AJ_T0091938.1 MGP_AJ_G0034616.1 mouse_genomes_project 9 36739787 36740729 - MGP_AJ_P0091938 Olfr958 protein_coding protein_coding MGP_AJ_T0101536.1 MGP_AJ_G0039502.1 mouse_genomes_project 9 12231342 12231416 + Gm24357 snoRNA snoRNA MGP_AJ_T0009228.1 MGP_AJ_G0007415.1 mouse_genomes_project 9 31559706 31560485 - Gm26662 lincRNA lincRNA MGP_AJ_T0095293.1 MGP_AJ_G0035405.1 mouse_genomes_project 9 118107705 118139379 + MGP_AJ_P0095293 Wdr48 protein_coding protein_coding MGP_AJ_T0091349.1 MGP_AJ_G0034354.1 mouse_genomes_project 9 15341448 15344305 + MGP_AJ_P0091349 Mbd3l2 protein_coding protein_coding MGP_AJ_T0101584.1 MGP_AJ_G0039550.1 mouse_genomes_project 9 93400909 93401019 + Gm25582 snoRNA snoRNA MGP_AJ_T0101592.1 MGP_AJ_G0039558.1 mouse_genomes_project 9 105045474 105045604 + Gm23595 snoRNA snoRNA MGP_AJ_T0092308.1 MGP_AJ_G0034750.1 mouse_genomes_project 9 46491866 46495675 + Tmprss5 protein_coding retained_intron MGP_AJ_T0092309.1 MGP_AJ_G0034750.1 mouse_genomes_project 9 46491866 46506554 + MGP_AJ_P0092309 Tmprss5 protein_coding nonsense_mediated_decay MGP_AJ_T0092310.1 MGP_AJ_G0034750.1 mouse_genomes_project 9 46491959 46505960 + MGP_AJ_P0092310 Tmprss5 protein_coding protein_coding MGP_AJ_T0092311.1 MGP_AJ_G0034750.1 mouse_genomes_project 9 46491959 46505960 + MGP_AJ_P0092311 Tmprss5 protein_coding protein_coding MGP_AJ_T0092312.1 MGP_AJ_G0034750.1 mouse_genomes_project 9 46497972 46506554 + MGP_AJ_P0092312 Tmprss5 protein_coding nonsense_mediated_decay MGP_AJ_T0092468.1 MGP_AJ_G0034804.1 mouse_genomes_project 9 51700601 51839448 - MGP_AJ_P0092468 Dmxl2 protein_coding protein_coding MGP_AJ_T0092469.1 MGP_AJ_G0034804.1 mouse_genomes_project 9 51700607 51717893 - Dmxl2 protein_coding retained_intron MGP_AJ_T0092470.1 MGP_AJ_G0034804.1 mouse_genomes_project 9 51700703 51783319 - MGP_AJ_P0092470 Dmxl2 protein_coding protein_coding MGP_AJ_T0092471.1 MGP_AJ_G0034804.1 mouse_genomes_project 9 51701554 51839318 - MGP_AJ_P0092471 Dmxl2 protein_coding protein_coding MGP_AJ_T0092472.1 MGP_AJ_G0034804.1 mouse_genomes_project 9 51751629 51812086 - MGP_AJ_P0092472 Dmxl2 protein_coding protein_coding MGP_AJ_T0092473.1 MGP_AJ_G0034804.1 mouse_genomes_project 9 51759151 51839393 - Dmxl2 protein_coding retained_intron MGP_AJ_T0092474.1 MGP_AJ_G0034804.1 mouse_genomes_project 9 51783229 51784900 - Dmxl2 protein_coding processed_transcript MGP_AJ_T0092475.1 MGP_AJ_G0034804.1 mouse_genomes_project 9 51810598 51839448 - Dmxl2 protein_coding retained_intron MGP_AJ_T0092476.1 MGP_AJ_G0034804.1 mouse_genomes_project 9 51811772 51839582 - MGP_AJ_P0092476 Dmxl2 protein_coding nonsense_mediated_decay MGP_AJ_T0094176.1 MGP_AJ_G0035204.1 mouse_genomes_project 9 104117808 104122093 + MGP_AJ_P0094176 Tlr9 protein_coding protein_coding MGP_AJ_T0016158.1 MGP_AJ_G0014253.1 mouse_genomes_project 9 98901365 98901729 + processed_pseudogene processed_pseudogene MGP_AJ_T0091933.1 MGP_AJ_G0034611.1 mouse_genomes_project 9 36489374 36490340 - MGP_AJ_P0091933 Olfr948 protein_coding protein_coding MGP_AJ_T0098491.1 MGP_AJ_G0036475.1 mouse_genomes_project 9 35283017 35283944 + pseudogene pseudogene MGP_AJ_T0005432.1 MGP_AJ_G0004601.1 mouse_genomes_project 9 41397620 41401017 + antisense antisense MGP_AJ_T0095178.1 MGP_AJ_G0035370.1 mouse_genomes_project 9 112673398 112674126 + MGP_AJ_P0095178 protein_coding protein_coding MGP_AJ_T0101604.1 MGP_AJ_G0039570.1 mouse_genomes_project 9 121361101 121361234 + Gm23323 snoRNA snoRNA MGP_AJ_T0005462.1 MGP_AJ_G0004619.1 mouse_genomes_project 9 64126942 64136989 + Gm15563 antisense antisense MGP_AJ_T0092916.1 MGP_AJ_G0034927.1 mouse_genomes_project 9 62513574 62549338 - MGP_AJ_P0092916 Hacd3 protein_coding protein_coding MGP_AJ_T0092103.1 MGP_AJ_G0034684.1 mouse_genomes_project 9 41631596 41639382 - MGP_AJ_P0092103 Hmbs protein_coding protein_coding MGP_AJ_T0100250.1 MGP_AJ_G0038216.1 mouse_genomes_project 9 10246958 10247065 + Gm26189 snRNA snRNA MGP_AJ_T0095034.1 MGP_AJ_G0035337.1 mouse_genomes_project 9 108861068 108866663 + MGP_AJ_P0095034 Prss42 protein_coding protein_coding MGP_AJ_T0002425.1 MGP_AJ_G0002334.1 mouse_genomes_project 9 97112614 97115483 + TEC TEC MGP_AJ_T0091461.1 MGP_AJ_G0034415.1 mouse_genomes_project 9 17911121 17918110 + MGP_AJ_P0091461 Icam5 protein_coding protein_coding MGP_AJ_T0094873.1 MGP_AJ_G0035313.1 mouse_genomes_project 9 107425170 107427330 - protein_coding retained_intron MGP_AJ_T0094874.1 MGP_AJ_G0035313.1 mouse_genomes_project 9 107427087 107739644 - MGP_AJ_P0094874 protein_coding protein_coding MGP_AJ_T0095179.1 MGP_AJ_G0035371.1 mouse_genomes_project 9 112743394 112799580 - MGP_AJ_P0095179 Cnot10 protein_coding protein_coding MGP_AJ_T0095180.1 MGP_AJ_G0035371.1 mouse_genomes_project 9 112756312 112799320 - MGP_AJ_P0095180 Cnot10 protein_coding unknown_likely_coding MGP_AJ_T0009345.1 MGP_AJ_G0007506.1 mouse_genomes_project 9 108716091 108716868 + Gm42470 lincRNA lincRNA MGP_AJ_T0092999.1 MGP_AJ_G0034953.1 mouse_genomes_project 9 63675987 63688512 + MGP_AJ_P0092999 Fam96a protein_coding protein_coding MGP_AJ_T0011740.1 MGP_AJ_G0009862.1 mouse_genomes_project 9 75901898 75902841 - Rn7sk misc_RNA misc_RNA MGP_AJ_T0009282.1 MGP_AJ_G0007458.1 mouse_genomes_project 9 75903121 75906078 + C920006O11Rik lincRNA lincRNA MGP_AJ_T0005523.1 MGP_AJ_G0004661.1 mouse_genomes_project 9 104206043 104231563 - Gm29123 antisense antisense MGP_AJ_T0093739.1 MGP_AJ_G0035117.1 mouse_genomes_project 9 93413991 93476661 + MGP_AJ_P0093739 Pcolce2 protein_coding protein_coding MGP_AJ_T0093740.1 MGP_AJ_G0035117.1 mouse_genomes_project 9 93458869 93473247 + Pcolce2 protein_coding processed_transcript MGP_AJ_T0093448.1 MGP_AJ_G0035058.1 mouse_genomes_project 9 77613093 77767385 - MGP_AJ_P0093448 Filip1 protein_coding protein_coding MGP_AJ_T0093449.1 MGP_AJ_G0035058.1 mouse_genomes_project 9 77613099 77629015 - Filip1 protein_coding processed_transcript MGP_AJ_T0093450.1 MGP_AJ_G0035058.1 mouse_genomes_project 9 77618703 77751669 - MGP_AJ_P0093450 Filip1 protein_coding protein_coding MGP_AJ_T0093443.1 MGP_AJ_G0035056.1 mouse_genomes_project 9 77550788 77555403 - MGP_AJ_P0093443 Cox7a2 protein_coding protein_coding MGP_AJ_T0002475.1 MGP_AJ_G0002384.1 mouse_genomes_project 9 119962764 119966067 - TEC TEC MGP_AJ_T0009358.1 MGP_AJ_G0007516.1 mouse_genomes_project 9 119137872 119139353 - 1700020M21Rik lincRNA lincRNA MGP_AJ_T0091960.1 MGP_AJ_G0034632.1 mouse_genomes_project 9 37135916 37136996 + MGP_AJ_P0091960 Olfr974 protein_coding protein_coding MGP_AJ_T0095031.1 MGP_AJ_G0035336.1 mouse_genomes_project 9 108802619 108829811 + MGP_AJ_P0095031 Myl3 protein_coding protein_coding MGP_AJ_T0095032.1 MGP_AJ_G0035336.1 mouse_genomes_project 9 108824486 108830106 + MGP_AJ_P0095032 Myl3 protein_coding protein_coding MGP_AJ_T0095033.1 MGP_AJ_G0035336.1 mouse_genomes_project 9 108829092 108830455 + Myl3 protein_coding retained_intron MGP_AJ_T0000344.1 MGP_AJ_G0000288.1 mouse_genomes_project 9 121301628 121301695 - mt-Tw Mt_tRNA Mt_tRNA MGP_AJ_T0094550.1 MGP_AJ_G0035261.1 mouse_genomes_project 9 105955033 105958593 + MGP_AJ_P0094550 Gmppb protein_coding protein_coding MGP_AJ_T0094551.1 MGP_AJ_G0035261.1 mouse_genomes_project 9 105955060 105955373 + Gmppb protein_coding processed_transcript MGP_AJ_T0094552.1 MGP_AJ_G0035261.1 mouse_genomes_project 9 105955080 105957708 + Gmppb protein_coding retained_intron MGP_AJ_T0094553.1 MGP_AJ_G0035261.1 mouse_genomes_project 9 105955116 105957494 + MGP_AJ_P0094553 Gmppb protein_coding protein_coding MGP_AJ_T0094554.1 MGP_AJ_G0035261.1 mouse_genomes_project 9 105955246 105957311 + Gmppb protein_coding retained_intron MGP_AJ_T0091553.1 MGP_AJ_G0034450.1 mouse_genomes_project 9 18894015 18906724 - MGP_AJ_P0091553 Ccdc151 protein_coding protein_coding MGP_AJ_T0091554.1 MGP_AJ_G0034450.1 mouse_genomes_project 9 18894015 18906724 - MGP_AJ_P0091554 Ccdc151 protein_coding protein_coding MGP_AJ_T0091879.1 MGP_AJ_G0034563.1 mouse_genomes_project 9 35205353 35206389 + MGP_AJ_P0091879 Olfr889 protein_coding protein_coding MGP_AJ_T0093068.1 MGP_AJ_G0034968.1 mouse_genomes_project 9 65419185 65420984 - MGP_AJ_P0093068 C2cd4a protein_coding protein_coding MGP_AJ_T0092034.1 MGP_AJ_G0034662.1 mouse_genomes_project 9 40396709 40482750 - MGP_AJ_P0092034 Pou2f3 protein_coding protein_coding MGP_AJ_T0092035.1 MGP_AJ_G0034662.1 mouse_genomes_project 9 40397309 40477653 - MGP_AJ_P0092035 Pou2f3 protein_coding protein_coding MGP_AJ_T0100298.1 MGP_AJ_G0038264.1 mouse_genomes_project 9 88154162 88154339 + Gm22866 snRNA snRNA MGP_AJ_T0016091.1 MGP_AJ_G0014186.1 mouse_genomes_project 9 72233352 72233542 + processed_pseudogene processed_pseudogene MGP_AJ_T0092819.1 MGP_AJ_G0034901.1 mouse_genomes_project 9 59922769 60033702 - MGP_AJ_P0092819 Coro2b protein_coding protein_coding MGP_AJ_T0092820.1 MGP_AJ_G0034901.1 mouse_genomes_project 9 59928964 59931378 - MGP_AJ_P0092820 Coro2b protein_coding protein_coding MGP_AJ_T0092821.1 MGP_AJ_G0034901.1 mouse_genomes_project 9 59931312 60006577 - MGP_AJ_P0092821 Coro2b protein_coding protein_coding MGP_AJ_T0092822.1 MGP_AJ_G0034901.1 mouse_genomes_project 9 59931639 59932631 - Coro2b protein_coding retained_intron MGP_AJ_T0092823.1 MGP_AJ_G0034901.1 mouse_genomes_project 9 59932714 59943475 - MGP_AJ_P0092823 Coro2b protein_coding protein_coding MGP_AJ_T0092824.1 MGP_AJ_G0034901.1 mouse_genomes_project 9 59935869 60016336 - MGP_AJ_P0092824 Coro2b protein_coding protein_coding MGP_AJ_T0092825.1 MGP_AJ_G0034901.1 mouse_genomes_project 9 59947245 60033618 - Coro2b protein_coding retained_intron MGP_AJ_T0011079.1 MGP_AJ_G0009201.1 mouse_genomes_project 9 69647467 69647545 + Gm27450 miRNA miRNA MGP_AJ_T0016070.1 MGP_AJ_G0014165.1 mouse_genomes_project 9 56120646 56120814 - processed_pseudogene processed_pseudogene MGP_AJ_T0091927.1 MGP_AJ_G0034605.1 mouse_genomes_project 9 36229799 36230918 - MGP_AJ_P0091927 Olfr938 protein_coding protein_coding MGP_AJ_T0091219.1 MGP_AJ_G0034311.1 mouse_genomes_project 9 5060356 5120297 - MGP_AJ_P0091219 Cep126 protein_coding protein_coding MGP_AJ_T0002378.1 MGP_AJ_G0002288.1 mouse_genomes_project 9 70357582 70357780 + TEC TEC MGP_AJ_T0095379.1 MGP_AJ_G0035429.1 mouse_genomes_project 9 119966156 119977865 + MGP_AJ_P0095379 Zfp651 protein_coding protein_coding MGP_AJ_T0092292.1 MGP_AJ_G0034740.1 mouse_genomes_project 9 45795237 45807124 + MGP_AJ_P0092292 unknown_likely_coding unknown_likely_coding MGP_AJ_T0002469.1 MGP_AJ_G0002378.1 mouse_genomes_project 9 108602574 108604661 + TEC TEC MGP_AJ_T0091218.1 MGP_AJ_G0034310.1 mouse_genomes_project 9 5007976 5029721 - MGP_AJ_P0091218 9230110C19Rik protein_coding protein_coding MGP_AJ_T0091370.1 MGP_AJ_G0034372.1 mouse_genomes_project 9 16344957 16345896 + MGP_AJ_P0091370 Olfr849 protein_coding protein_coding MGP_AJ_T0091865.1 MGP_AJ_G0034551.1 mouse_genomes_project 9 34707041 34716503 - MGP_AJ_P0091865 Panx3 protein_coding protein_coding MGP_AJ_T0091866.1 MGP_AJ_G0034551.1 mouse_genomes_project 9 34711510 34716454 - MGP_AJ_P0091866 Panx3 protein_coding nonsense_mediated_decay MGP_AJ_T0016121.1 MGP_AJ_G0014216.1 mouse_genomes_project 9 85788996 85789584 - processed_pseudogene processed_pseudogene MGP_AJ_T0091582.1 MGP_AJ_G0034467.1 mouse_genomes_project 9 19391358 19813882 + MGP_AJ_P0091582 Bbs9 protein_coding protein_coding MGP_AJ_T0091583.1 MGP_AJ_G0034467.1 mouse_genomes_project 9 19391365 19813876 + MGP_AJ_P0091583 Bbs9 protein_coding protein_coding MGP_AJ_T0091584.1 MGP_AJ_G0034467.1 mouse_genomes_project 9 19391374 19813876 + MGP_AJ_P0091584 Bbs9 protein_coding protein_coding MGP_AJ_T0091585.1 MGP_AJ_G0034467.1 mouse_genomes_project 9 19391374 19429777 + MGP_AJ_P0091585 Bbs9 protein_coding protein_coding MGP_AJ_T0091586.1 MGP_AJ_G0034467.1 mouse_genomes_project 9 19391510 19429823 + MGP_AJ_P0091586 Bbs9 protein_coding protein_coding MGP_AJ_T0091587.1 MGP_AJ_G0034467.1 mouse_genomes_project 9 19406579 19813882 + MGP_AJ_P0091587 Bbs9 protein_coding protein_coding MGP_AJ_T0091588.1 MGP_AJ_G0034467.1 mouse_genomes_project 9 19490384 19559382 + Bbs9 protein_coding processed_transcript MGP_AJ_T0091589.1 MGP_AJ_G0034467.1 mouse_genomes_project 9 19566062 19813882 + MGP_AJ_P0091589 Bbs9 protein_coding protein_coding MGP_AJ_T0091590.1 MGP_AJ_G0034467.1 mouse_genomes_project 9 19574167 19813882 + MGP_AJ_P0091590 Bbs9 protein_coding nonsense_mediated_decay MGP_AJ_T0091591.1 MGP_AJ_G0034467.1 mouse_genomes_project 9 19588942 19611424 + Bbs9 protein_coding retained_intron MGP_AJ_T0091592.1 MGP_AJ_G0034467.1 mouse_genomes_project 9 19609660 19813876 + Bbs9 protein_coding retained_intron MGP_AJ_T0011089.1 MGP_AJ_G0009211.1 mouse_genomes_project 9 104048292 104048382 + Mir135a-1 miRNA miRNA MGP_AJ_T0094975.1 MGP_AJ_G0035327.1 mouse_genomes_project 9 108442459 108465344 - MGP_AJ_P0094975 Ptpn23 protein_coding protein_coding MGP_AJ_T0094976.1 MGP_AJ_G0035327.1 mouse_genomes_project 9 108442701 108443625 - MGP_AJ_P0094976 Ptpn23 protein_coding protein_coding MGP_AJ_T0094977.1 MGP_AJ_G0035327.1 mouse_genomes_project 9 108443217 108444027 - Ptpn23 protein_coding retained_intron MGP_AJ_T0094978.1 MGP_AJ_G0035327.1 mouse_genomes_project 9 108446628 108447853 - Ptpn23 protein_coding retained_intron MGP_AJ_T0092943.1 MGP_AJ_G0034942.1 mouse_genomes_project 9 63094878 63120094 - MGP_AJ_P0092943 Plekho2 protein_coding protein_coding MGP_AJ_T0018595.1 MGP_AJ_G0015742.1 mouse_genomes_project 9 120582091 120601105 - A730085K08Rik processed_transcript processed_transcript MGP_AJ_T0011085.1 MGP_AJ_G0009207.1 mouse_genomes_project 9 92533004 92533066 + Mir7656 miRNA miRNA MGP_AJ_T0009216.1 MGP_AJ_G0007403.1 mouse_genomes_project 9 18295863 18302386 - Gm16853 lincRNA lincRNA MGP_AJ_T0016063.1 MGP_AJ_G0014158.1 mouse_genomes_project 9 38912362 38913330 + processed_pseudogene processed_pseudogene MGP_AJ_T0002352.1 MGP_AJ_G0002262.1 mouse_genomes_project 9 29512174 29514101 - TEC TEC MGP_AJ_T0094863.1 MGP_AJ_G0035310.1 mouse_genomes_project 9 107189549 107310330 - MGP_AJ_P0094863 protein_coding protein_coding MGP_AJ_T0094864.1 MGP_AJ_G0035310.1 mouse_genomes_project 9 107189595 107739653 - MGP_AJ_P0094864 protein_coding protein_coding MGP_AJ_T0094865.1 MGP_AJ_G0035310.1 mouse_genomes_project 9 107189885 107739648 - MGP_AJ_P0094865 protein_coding protein_coding MGP_AJ_T0094871.1 MGP_AJ_G0035310.1 mouse_genomes_project 9 107332054 107785847 - MGP_AJ_P0094871 protein_coding protein_coding MGP_AJ_T0094240.1 MGP_AJ_G0035214.1 mouse_genomes_project 9 104372232 104378194 + Rrp9 protein_coding processed_transcript MGP_AJ_T0094241.1 MGP_AJ_G0035214.1 mouse_genomes_project 9 104373538 104381744 + MGP_AJ_P0094241 Rrp9 protein_coding protein_coding MGP_AJ_T0094242.1 MGP_AJ_G0035214.1 mouse_genomes_project 9 104373587 104381736 + Rrp9 protein_coding retained_intron MGP_AJ_T0094243.1 MGP_AJ_G0035214.1 mouse_genomes_project 9 104373599 104374260 + Rrp9 protein_coding retained_intron MGP_AJ_T0094244.1 MGP_AJ_G0035214.1 mouse_genomes_project 9 104377113 104377964 + Rrp9 protein_coding retained_intron MGP_AJ_T0094245.1 MGP_AJ_G0035214.1 mouse_genomes_project 9 104380173 104381742 + MGP_AJ_P0094245 Rrp9 protein_coding nonsense_mediated_decay MGP_AJ_T0094246.1 MGP_AJ_G0035214.1 mouse_genomes_project 9 104380783 104381744 + Rrp9 protein_coding retained_intron MGP_AJ_T0002416.1 MGP_AJ_G0002325.1 mouse_genomes_project 9 90356037 90360106 - TEC TEC MGP_AJ_T0009236.1 MGP_AJ_G0007421.1 mouse_genomes_project 9 38444754 38466247 + lincRNA lincRNA MGP_AJ_T0094503.1 MGP_AJ_G0035255.1 mouse_genomes_project 9 105879571 105880138 + Uba7 protein_coding processed_transcript MGP_AJ_T0094504.1 MGP_AJ_G0035255.1 mouse_genomes_project 9 105879600 105888123 + MGP_AJ_P0094504 Uba7 protein_coding protein_coding MGP_AJ_T0094505.1 MGP_AJ_G0035255.1 mouse_genomes_project 9 105879636 105888123 + Uba7 protein_coding retained_intron MGP_AJ_T0094506.1 MGP_AJ_G0035255.1 mouse_genomes_project 9 105879641 105888123 + Uba7 protein_coding retained_intron MGP_AJ_T0094507.1 MGP_AJ_G0035255.1 mouse_genomes_project 9 105879648 105884562 + Uba7 protein_coding retained_intron MGP_AJ_T0094508.1 MGP_AJ_G0035255.1 mouse_genomes_project 9 105879672 105880217 + Uba7 protein_coding processed_transcript MGP_AJ_T0094509.1 MGP_AJ_G0035255.1 mouse_genomes_project 9 105879672 105888123 + Uba7 protein_coding retained_intron MGP_AJ_T0094510.1 MGP_AJ_G0035255.1 mouse_genomes_project 9 105879721 105888125 + MGP_AJ_P0094510 Uba7 protein_coding nonsense_mediated_decay MGP_AJ_T0094511.1 MGP_AJ_G0035255.1 mouse_genomes_project 9 105880022 105888127 + MGP_AJ_P0094511 Uba7 protein_coding nonsense_mediated_decay MGP_AJ_T0094512.1 MGP_AJ_G0035255.1 mouse_genomes_project 9 105880374 105881033 + Uba7 protein_coding retained_intron MGP_AJ_T0094513.1 MGP_AJ_G0035255.1 mouse_genomes_project 9 105880957 105881591 + Uba7 protein_coding retained_intron MGP_AJ_T0094514.1 MGP_AJ_G0035255.1 mouse_genomes_project 9 105883805 105886852 + Uba7 protein_coding retained_intron MGP_AJ_T0094515.1 MGP_AJ_G0035255.1 mouse_genomes_project 9 105884956 105887266 + Uba7 protein_coding retained_intron MGP_AJ_T0094516.1 MGP_AJ_G0035255.1 mouse_genomes_project 9 105887091 105888120 + Uba7 protein_coding retained_intron MGP_AJ_T0094517.1 MGP_AJ_G0035255.1 mouse_genomes_project 9 105887101 105888018 + Uba7 protein_coding retained_intron MGP_AJ_T0101599.1 MGP_AJ_G0039565.1 mouse_genomes_project 9 111830674 111830791 - Gm25059 snoRNA snoRNA MGP_AJ_T0094979.1 MGP_AJ_G0035328.1 mouse_genomes_project 9 108477667 108480962 + MGP_AJ_P0094979 Ngp protein_coding protein_coding MGP_AJ_T0095286.1 MGP_AJ_G0035402.1 mouse_genomes_project 9 117705718 117787523 - MGP_AJ_P0095286 Scn5a protein_coding protein_coding MGP_AJ_T0095287.1 MGP_AJ_G0035402.1 mouse_genomes_project 9 117705720 117803855 - MGP_AJ_P0095287 Scn5a protein_coding protein_coding MGP_AJ_T0095288.1 MGP_AJ_G0035402.1 mouse_genomes_project 9 117706634 117803855 - MGP_AJ_P0095288 Scn5a protein_coding protein_coding MGP_AJ_T0095289.1 MGP_AJ_G0035402.1 mouse_genomes_project 9 117707888 117787469 - MGP_AJ_P0095289 Scn5a protein_coding unknown_likely_coding MGP_AJ_T0095290.1 MGP_AJ_G0035402.1 mouse_genomes_project 9 117787381 117788350 - MGP_AJ_P0095290 Scn5a protein_coding protein_coding MGP_AJ_T0095248.1 MGP_AJ_G0035390.1 mouse_genomes_project 9 117288526 117310026 - MGP_AJ_P0095248 Plcd1 protein_coding protein_coding MGP_AJ_T0092036.1 MGP_AJ_G0034663.1 mouse_genomes_project 9 40493672 40512006 - MGP_AJ_P0092036 Oaf protein_coding protein_coding MGP_AJ_T0093634.1 MGP_AJ_G0035091.1 mouse_genomes_project 9 86311228 86334802 + MGP_AJ_P0093634 Zfp949 protein_coding protein_coding MGP_AJ_T0093635.1 MGP_AJ_G0035091.1 mouse_genomes_project 9 86311252 86330335 + MGP_AJ_P0093635 Zfp949 protein_coding protein_coding MGP_AJ_T0093636.1 MGP_AJ_G0035091.1 mouse_genomes_project 9 86311293 86331232 + Zfp949 protein_coding retained_intron MGP_AJ_T0093637.1 MGP_AJ_G0035091.1 mouse_genomes_project 9 86311308 86317742 + MGP_AJ_P0093637 Zfp949 protein_coding protein_coding MGP_AJ_T0093638.1 MGP_AJ_G0035091.1 mouse_genomes_project 9 86311391 86334802 + MGP_AJ_P0093638 Zfp949 protein_coding protein_coding MGP_AJ_T0095321.1 MGP_AJ_G0035417.1 mouse_genomes_project 9 118758360 118787622 + MGP_AJ_P0095321 Entpd3 protein_coding protein_coding MGP_AJ_T0095322.1 MGP_AJ_G0035417.1 mouse_genomes_project 9 118776055 118778976 + Entpd3 protein_coding retained_intron MGP_AJ_T0091269.1 MGP_AJ_G0034327.1 mouse_genomes_project 9 11353638 11395849 - MGP_AJ_P0091269 Kdm4d protein_coding protein_coding MGP_AJ_T0091270.1 MGP_AJ_G0034327.1 mouse_genomes_project 9 11354190 11395767 - MGP_AJ_P0091270 Kdm4d protein_coding protein_coding MGP_AJ_T0005412.1 MGP_AJ_G0004587.1 mouse_genomes_project 9 17472616 17482559 + Fbxl12os antisense antisense MGP_AJ_T0005413.1 MGP_AJ_G0004587.1 mouse_genomes_project 9 17472803 17480151 + Fbxl12os antisense antisense MGP_AJ_T0005414.1 MGP_AJ_G0004587.1 mouse_genomes_project 9 17472951 17480156 + Fbxl12os antisense antisense MGP_AJ_T0005415.1 MGP_AJ_G0004587.1 mouse_genomes_project 9 17479887 17481053 + Fbxl12os antisense antisense MGP_AJ_T0094700.1 MGP_AJ_G0035283.1 mouse_genomes_project 9 106476345 106481817 + MGP_AJ_P0094700 Impdh2 protein_coding protein_coding MGP_AJ_T0094701.1 MGP_AJ_G0035283.1 mouse_genomes_project 9 106476498 106479569 + MGP_AJ_P0094701 Impdh2 protein_coding protein_coding MGP_AJ_T0094702.1 MGP_AJ_G0035283.1 mouse_genomes_project 9 106476529 106477931 + Impdh2 protein_coding retained_intron MGP_AJ_T0094703.1 MGP_AJ_G0035283.1 mouse_genomes_project 9 106476539 106478605 + Impdh2 protein_coding retained_intron MGP_AJ_T0094704.1 MGP_AJ_G0035283.1 mouse_genomes_project 9 106479367 106481627 + MGP_AJ_P0094704 Impdh2 protein_coding protein_coding MGP_AJ_T0094705.1 MGP_AJ_G0035283.1 mouse_genomes_project 9 106479501 106480403 + Impdh2 protein_coding retained_intron MGP_AJ_T0094706.1 MGP_AJ_G0035283.1 mouse_genomes_project 9 106481432 106481802 + Impdh2 protein_coding retained_intron MGP_AJ_T0094707.1 MGP_AJ_G0035283.1 mouse_genomes_project 9 106481436 106481797 + Impdh2 protein_coding retained_intron MGP_AJ_T0005429.1 MGP_AJ_G0004599.1 mouse_genomes_project 9 39279632 39290995 + Gm16214 antisense antisense MGP_AJ_T0092800.1 MGP_AJ_G0034897.1 mouse_genomes_project 9 59449740 59524069 - Paqr5 protein_coding processed_transcript MGP_AJ_T0092801.1 MGP_AJ_G0034897.1 mouse_genomes_project 9 59449997 59524124 - MGP_AJ_P0092801 Paqr5 protein_coding protein_coding MGP_AJ_T0092802.1 MGP_AJ_G0034897.1 mouse_genomes_project 9 59452301 59474005 - MGP_AJ_P0092802 Paqr5 protein_coding protein_coding MGP_AJ_T0092808.1 MGP_AJ_G0034899.1 mouse_genomes_project 9 59771808 59783233 - MGP_AJ_P0092808 Spesp1 protein_coding protein_coding MGP_AJ_T0011104.1 MGP_AJ_G0009226.1 mouse_genomes_project 9 113546035 113546158 + Mir467h miRNA miRNA MGP_AJ_T0093751.1 MGP_AJ_G0035120.1 mouse_genomes_project 9 93638721 93649438 + Atr protein_coding retained_intron MGP_AJ_T0093752.1 MGP_AJ_G0035120.1 mouse_genomes_project 9 93638721 93737073 + MGP_AJ_P0093752 Atr protein_coding protein_coding MGP_AJ_T0093753.1 MGP_AJ_G0035120.1 mouse_genomes_project 9 93638763 93688034 + Atr protein_coding retained_intron MGP_AJ_T0093754.1 MGP_AJ_G0035120.1 mouse_genomes_project 9 93638774 93644663 + Atr protein_coding retained_intron MGP_AJ_T0093755.1 MGP_AJ_G0035120.1 mouse_genomes_project 9 93638779 93642880 + Atr protein_coding retained_intron MGP_AJ_T0093756.1 MGP_AJ_G0035120.1 mouse_genomes_project 9 93638793 93651030 + Atr protein_coding retained_intron MGP_AJ_T0093757.1 MGP_AJ_G0035120.1 mouse_genomes_project 9 93638849 93737053 + MGP_AJ_P0093757 Atr protein_coding unknown_likely_coding MGP_AJ_T0093758.1 MGP_AJ_G0035120.1 mouse_genomes_project 9 93669673 93672001 + Atr protein_coding retained_intron MGP_AJ_T0093759.1 MGP_AJ_G0035120.1 mouse_genomes_project 9 93687659 93690344 + Atr protein_coding retained_intron MGP_AJ_T0093760.1 MGP_AJ_G0035120.1 mouse_genomes_project 9 93688516 93690348 + Atr protein_coding retained_intron MGP_AJ_T0093761.1 MGP_AJ_G0035120.1 mouse_genomes_project 9 93698969 93703127 + Atr protein_coding retained_intron MGP_AJ_T0093762.1 MGP_AJ_G0035120.1 mouse_genomes_project 9 93719115 93720890 + Atr protein_coding retained_intron MGP_AJ_T0093763.1 MGP_AJ_G0035120.1 mouse_genomes_project 9 93722373 93726165 + Atr protein_coding retained_intron MGP_AJ_T0009220.1 MGP_AJ_G0007407.1 mouse_genomes_project 9 22107523 22107970 + Gm29375 lincRNA lincRNA MGP_AJ_T0093296.1 MGP_AJ_G0035014.1 mouse_genomes_project 9 72685643 72708367 + MGP_AJ_P0093296 Arpp19 protein_coding protein_coding MGP_AJ_T0093297.1 MGP_AJ_G0035014.1 mouse_genomes_project 9 72685643 72708348 + MGP_AJ_P0093297 Arpp19 protein_coding protein_coding MGP_AJ_T0093298.1 MGP_AJ_G0035014.1 mouse_genomes_project 9 72685706 72686512 + Arpp19 protein_coding retained_intron MGP_AJ_T0093299.1 MGP_AJ_G0035014.1 mouse_genomes_project 9 72685706 72704891 + MGP_AJ_P0093299 Arpp19 protein_coding protein_coding MGP_AJ_T0093300.1 MGP_AJ_G0035014.1 mouse_genomes_project 9 72685708 72705764 + MGP_AJ_P0093300 Arpp19 protein_coding nonsense_mediated_decay MGP_AJ_T0093301.1 MGP_AJ_G0035014.1 mouse_genomes_project 9 72685747 72708367 + MGP_AJ_P0093301 Arpp19 protein_coding protein_coding MGP_AJ_T0093302.1 MGP_AJ_G0035014.1 mouse_genomes_project 9 72685778 72704946 + MGP_AJ_P0093302 Arpp19 protein_coding protein_coding MGP_AJ_T0093303.1 MGP_AJ_G0035014.1 mouse_genomes_project 9 72685848 72704875 + MGP_AJ_P0093303 Arpp19 protein_coding protein_coding MGP_AJ_T0093304.1 MGP_AJ_G0035014.1 mouse_genomes_project 9 72685946 72704858 + MGP_AJ_P0093304 Arpp19 protein_coding protein_coding MGP_AJ_T0093305.1 MGP_AJ_G0035014.1 mouse_genomes_project 9 72700041 72705437 + MGP_AJ_P0093305 Arpp19 protein_coding protein_coding MGP_AJ_T0093306.1 MGP_AJ_G0035014.1 mouse_genomes_project 9 72700115 72706130 + MGP_AJ_P0093306 Arpp19 protein_coding protein_coding MGP_AJ_T0011046.1 MGP_AJ_G0009168.1 mouse_genomes_project 9 18712639 18712699 - Mir7083 miRNA miRNA MGP_AJ_T0009328.1 MGP_AJ_G0007495.1 mouse_genomes_project 9 101767126 101807818 - Gm29154 lincRNA lincRNA MGP_AJ_T0009329.1 MGP_AJ_G0007495.1 mouse_genomes_project 9 101767229 101807104 - Gm29154 lincRNA lincRNA MGP_AJ_T0092414.1 MGP_AJ_G0034780.1 mouse_genomes_project 9 48667167 48675469 - MGP_AJ_P0092414 Gm684 protein_coding protein_coding MGP_AJ_T0091917.1 MGP_AJ_G0034595.1 mouse_genomes_project 9 36000566 36001616 + MGP_AJ_P0091917 Olfr26 protein_coding protein_coding MGP_AJ_T0094721.1 MGP_AJ_G0035287.1 mouse_genomes_project 9 106495089 106513054 - MGP_AJ_P0094721 P4htm protein_coding protein_coding MGP_AJ_T0094722.1 MGP_AJ_G0035287.1 mouse_genomes_project 9 106495406 106495785 - P4htm protein_coding processed_transcript MGP_AJ_T0094723.1 MGP_AJ_G0035287.1 mouse_genomes_project 9 106496816 106499163 - P4htm protein_coding retained_intron MGP_AJ_T0094724.1 MGP_AJ_G0035287.1 mouse_genomes_project 9 106497777 106512963 - P4htm protein_coding retained_intron MGP_AJ_T0094725.1 MGP_AJ_G0035287.1 mouse_genomes_project 9 106499217 106512967 - MGP_AJ_P0094725 P4htm protein_coding protein_coding MGP_AJ_T0094726.1 MGP_AJ_G0035287.1 mouse_genomes_project 9 106499217 106512733 - MGP_AJ_P0094726 P4htm protein_coding protein_coding MGP_AJ_T0092836.1 MGP_AJ_G0034907.1 mouse_genomes_project 9 60642673 60653473 - MGP_AJ_P0092836 Skor1 protein_coding protein_coding MGP_AJ_T0092837.1 MGP_AJ_G0034907.1 mouse_genomes_project 9 60642673 60651523 - MGP_AJ_P0092837 Skor1 protein_coding protein_coding MGP_AJ_T0092838.1 MGP_AJ_G0034907.1 mouse_genomes_project 9 60642679 60651492 - MGP_AJ_P0092838 Skor1 protein_coding protein_coding MGP_AJ_T0094371.1 MGP_AJ_G0035240.1 mouse_genomes_project 9 105475894 105480518 + MGP_AJ_P0094371 Nat6 protein_coding protein_coding MGP_AJ_T0094372.1 MGP_AJ_G0035240.1 mouse_genomes_project 9 105475894 105480518 + MGP_AJ_P0094372 Nat6 protein_coding protein_coding MGP_AJ_T0094373.1 MGP_AJ_G0035240.1 mouse_genomes_project 9 105475894 105480518 + MGP_AJ_P0094373 Nat6 protein_coding protein_coding MGP_AJ_T0094374.1 MGP_AJ_G0035240.1 mouse_genomes_project 9 105475894 105480518 + MGP_AJ_P0094374 Nat6 protein_coding protein_coding MGP_AJ_T0094375.1 MGP_AJ_G0035240.1 mouse_genomes_project 9 105475894 105480518 + MGP_AJ_P0094375 Nat6 protein_coding protein_coding MGP_AJ_T0094376.1 MGP_AJ_G0035240.1 mouse_genomes_project 9 105475894 105480518 + MGP_AJ_P0094376 Nat6 protein_coding protein_coding MGP_AJ_T0094378.1 MGP_AJ_G0035240.1 mouse_genomes_project 9 105477128 105481049 + MGP_AJ_P0094378 Nat6 protein_coding protein_coding MGP_AJ_T0094490.1 MGP_AJ_G0035252.1 mouse_genomes_project 9 105832590 105836583 + MGP_AJ_P0094490 Actl11 protein_coding protein_coding MGP_AJ_T0091336.1 MGP_AJ_G0034350.1 mouse_genomes_project 9 15193219 15214952 + MGP_AJ_P0091336 Chordc1 protein_coding protein_coding MGP_AJ_T0009303.1 MGP_AJ_G0007475.1 mouse_genomes_project 9 90123821 90126980 - Gm29139 lincRNA lincRNA MGP_AJ_T0093331.1 MGP_AJ_G0035021.1 mouse_genomes_project 9 73111167 73135799 + MGP_AJ_P0093331 Leo1 protein_coding protein_coding MGP_AJ_T0099110.1 MGP_AJ_G0037081.1 mouse_genomes_project 9 86201203 86203356 - Gm28229 sense_intronic sense_intronic MGP_AJ_T0092318.1 MGP_AJ_G0034755.1 mouse_genomes_project 9 46892804 47190150 - MGP_AJ_P0092318 Ncam1 protein_coding protein_coding MGP_AJ_T0092319.1 MGP_AJ_G0034755.1 mouse_genomes_project 9 46892817 46959901 - MGP_AJ_P0092319 Ncam1 protein_coding protein_coding MGP_AJ_T0092320.1 MGP_AJ_G0034755.1 mouse_genomes_project 9 46895700 47190097 - MGP_AJ_P0092320 Ncam1 protein_coding protein_coding MGP_AJ_T0092321.1 MGP_AJ_G0034755.1 mouse_genomes_project 9 46907904 47190115 - MGP_AJ_P0092321 Ncam1 protein_coding protein_coding MGP_AJ_T0092323.1 MGP_AJ_G0034755.1 mouse_genomes_project 9 46914241 46934777 - MGP_AJ_P0092323 Ncam1 protein_coding protein_coding MGP_AJ_T0092324.1 MGP_AJ_G0034755.1 mouse_genomes_project 9 46921850 47189983 - MGP_AJ_P0092324 Ncam1 protein_coding protein_coding MGP_AJ_T0009318.1 MGP_AJ_G0007485.1 mouse_genomes_project 9 96543064 96608101 - E330023G01Rik lincRNA lincRNA MGP_AJ_T0016170.1 MGP_AJ_G0014265.1 mouse_genomes_project 9 104013189 104013787 - processed_pseudogene processed_pseudogene MGP_AJ_T0095450.1 MGP_AJ_G0035457.1 mouse_genomes_project 9 121571106 121670200 + MGP_AJ_P0095450 Lars2 protein_coding protein_coding MGP_AJ_T0095451.1 MGP_AJ_G0035457.1 mouse_genomes_project 9 121571117 121669963 + MGP_AJ_P0095451 Lars2 protein_coding unknown_likely_coding MGP_AJ_T0095057.1 MGP_AJ_G0035345.1 mouse_genomes_project 9 108980792 108982899 - MGP_AJ_P0095057 Gm590 protein_coding protein_coding MGP_AJ_T0092865.1 MGP_AJ_G0034915.1 mouse_genomes_project 9 61653448 61690419 - MGP_AJ_P0092865 Zwilch protein_coding protein_coding MGP_AJ_T0092866.1 MGP_AJ_G0034915.1 mouse_genomes_project 9 61653973 61690173 - MGP_AJ_P0092866 Zwilch protein_coding protein_coding MGP_AJ_T0092867.1 MGP_AJ_G0034915.1 mouse_genomes_project 9 61654016 61660631 - Zwilch protein_coding retained_intron MGP_AJ_T0092868.1 MGP_AJ_G0034915.1 mouse_genomes_project 9 61656208 61690209 - MGP_AJ_P0092868 Zwilch protein_coding protein_coding MGP_AJ_T0092869.1 MGP_AJ_G0034915.1 mouse_genomes_project 9 61656285 61666651 - MGP_AJ_P0092869 Zwilch protein_coding nonsense_mediated_decay MGP_AJ_T0092870.1 MGP_AJ_G0034915.1 mouse_genomes_project 9 61656287 61663773 - MGP_AJ_P0092870 Zwilch protein_coding nonsense_mediated_decay MGP_AJ_T0092871.1 MGP_AJ_G0034915.1 mouse_genomes_project 9 61660603 61671885 - Zwilch protein_coding retained_intron MGP_AJ_T0092872.1 MGP_AJ_G0034915.1 mouse_genomes_project 9 61663789 61672133 - Zwilch protein_coding retained_intron MGP_AJ_T0092873.1 MGP_AJ_G0034915.1 mouse_genomes_project 9 61671570 61690228 - MGP_AJ_P0092873 Zwilch protein_coding protein_coding MGP_AJ_T0092874.1 MGP_AJ_G0034915.1 mouse_genomes_project 9 61677342 61690221 - MGP_AJ_P0092874 Zwilch protein_coding nonsense_mediated_decay MGP_AJ_T0092875.1 MGP_AJ_G0034915.1 mouse_genomes_project 9 61677761 61690203 - MGP_AJ_P0092875 Zwilch protein_coding protein_coding MGP_AJ_T0092876.1 MGP_AJ_G0034915.1 mouse_genomes_project 9 61679049 61690205 - MGP_AJ_P0092876 Zwilch protein_coding nonsense_mediated_decay MGP_AJ_T0092877.1 MGP_AJ_G0034915.1 mouse_genomes_project 9 61684476 61690218 - Zwilch protein_coding retained_intron MGP_AJ_T0016085.1 MGP_AJ_G0014180.1 mouse_genomes_project 9 70188193 70188401 + processed_pseudogene processed_pseudogene MGP_AJ_T0092914.1 MGP_AJ_G0034926.1 mouse_genomes_project 9 62487428 62513564 + MGP_AJ_P0092914 Vwa9 protein_coding protein_coding MGP_AJ_T0092915.1 MGP_AJ_G0034926.1 mouse_genomes_project 9 62487533 62513564 + MGP_AJ_P0092915 Vwa9 protein_coding protein_coding MGP_AJ_T0002426.1 MGP_AJ_G0002335.1 mouse_genomes_project 9 97128953 97129644 + TEC TEC MGP_AJ_T0091358.1 MGP_AJ_G0034360.1 mouse_genomes_project 9 15765331 15766297 + MGP_AJ_P0091358 Olfr829 protein_coding protein_coding MGP_AJ_T0091361.1 MGP_AJ_G0034363.1 mouse_genomes_project 9 15857351 15858290 + MGP_AJ_P0091361 Olfr832 protein_coding protein_coding MGP_AJ_T0100257.1 MGP_AJ_G0038223.1 mouse_genomes_project 9 19696295 19696380 - Gm27639 snRNA snRNA MGP_AJ_T0016086.1 MGP_AJ_G0014181.1 mouse_genomes_project 9 70243985 70244802 - processed_pseudogene processed_pseudogene MGP_AJ_T0091481.1 MGP_AJ_G0034425.1 mouse_genomes_project 9 18160400 18175819 - MGP_AJ_P0091481 Kri1 protein_coding protein_coding MGP_AJ_T0091482.1 MGP_AJ_G0034425.1 mouse_genomes_project 9 18160579 18175803 - MGP_AJ_P0091482 Kri1 protein_coding protein_coding MGP_AJ_T0091483.1 MGP_AJ_G0034425.1 mouse_genomes_project 9 18160811 18162337 - Kri1 protein_coding retained_intron MGP_AJ_T0091484.1 MGP_AJ_G0034425.1 mouse_genomes_project 9 18165851 18175819 - Kri1 protein_coding retained_intron MGP_AJ_T0091485.1 MGP_AJ_G0034425.1 mouse_genomes_project 9 18168034 18175806 - Kri1 protein_coding retained_intron MGP_AJ_T0091486.1 MGP_AJ_G0034425.1 mouse_genomes_project 9 18168994 18175819 - Kri1 protein_coding retained_intron MGP_AJ_T0091487.1 MGP_AJ_G0034425.1 mouse_genomes_project 9 18175374 18175806 - Kri1 protein_coding retained_intron MGP_AJ_T0092029.1 MGP_AJ_G0034659.1 mouse_genomes_project 9 39780528 40213477 - MGP_AJ_P0092029 Grik4 protein_coding protein_coding MGP_AJ_T0092030.1 MGP_AJ_G0034659.1 mouse_genomes_project 9 39782780 40075964 - MGP_AJ_P0092030 Grik4 protein_coding protein_coding MGP_AJ_T0091594.1 MGP_AJ_G0034469.1 mouse_genomes_project 9 21036299 21219881 + MGP_AJ_P0091594 Npsr1 protein_coding protein_coding MGP_AJ_T0091595.1 MGP_AJ_G0034469.1 mouse_genomes_project 9 21036321 21246366 + MGP_AJ_P0091595 Npsr1 protein_coding protein_coding MGP_AJ_T0091596.1 MGP_AJ_G0034469.1 mouse_genomes_project 9 21187807 21243781 + MGP_AJ_P0091596 Npsr1 protein_coding protein_coding MGP_AJ_T0091597.1 MGP_AJ_G0034469.1 mouse_genomes_project 9 21230321 21244839 + Npsr1 protein_coding processed_transcript MGP_AJ_T0100275.1 MGP_AJ_G0038241.1 mouse_genomes_project 9 60948843 60948985 + Gm25995 snRNA snRNA MGP_AJ_T0092159.1 MGP_AJ_G0034700.1 mouse_genomes_project 9 42104618 42110093 - Tmem25 protein_coding processed_transcript MGP_AJ_T0092160.1 MGP_AJ_G0034700.1 mouse_genomes_project 9 42104618 42110158 - MGP_AJ_P0092160 Tmem25 protein_coding protein_coding MGP_AJ_T0092161.1 MGP_AJ_G0034700.1 mouse_genomes_project 9 42104618 42110093 - MGP_AJ_P0092161 Tmem25 protein_coding protein_coding MGP_AJ_T0092546.1 MGP_AJ_G0034826.1 mouse_genomes_project 9 53299865 53310122 - MGP_AJ_P0092546 4930563M21Rik protein_coding protein_coding MGP_AJ_T0005549.1 MGP_AJ_G0004682.1 mouse_genomes_project 9 109636009 109636623 + Gm43236 antisense antisense MGP_AJ_T0091192.1 MGP_AJ_G0034305.1 mouse_genomes_project 9 4657845 4665341 + MGP_AJ_P0091192 Mmp7 protein_coding protein_coding MGP_AJ_T0092628.1 MGP_AJ_G0034857.1 mouse_genomes_project 9 55085402 55092350 + MGP_AJ_P0092628 Cyp1a1 protein_coding protein_coding MGP_AJ_T0093707.1 MGP_AJ_G0035108.1 mouse_genomes_project 9 90097014 90119588 + MGP_AJ_P0093707 Plscr2 protein_coding protein_coding MGP_AJ_T0093708.1 MGP_AJ_G0035108.1 mouse_genomes_project 9 90097043 90103503 + MGP_AJ_P0093708 Plscr2 protein_coding protein_coding MGP_AJ_T0093709.1 MGP_AJ_G0035108.1 mouse_genomes_project 9 90112123 90113626 + Plscr2 protein_coding retained_intron MGP_AJ_T0095116.1 MGP_AJ_G0035356.1 mouse_genomes_project 9 109636023 109768715 - MGP_AJ_P0095116 Stac protein_coding protein_coding MGP_AJ_T0095117.1 MGP_AJ_G0035356.1 mouse_genomes_project 9 109636023 109768592 - MGP_AJ_P0095117 Stac protein_coding nonsense_mediated_decay MGP_AJ_T0095118.1 MGP_AJ_G0035356.1 mouse_genomes_project 9 109710438 109768696 - Stac protein_coding processed_transcript MGP_AJ_T0091426.1 MGP_AJ_G0034401.1 mouse_genomes_project 9 17505620 17509518 + Ubl5 protein_coding retained_intron MGP_AJ_T0091427.1 MGP_AJ_G0034401.1 mouse_genomes_project 9 17506060 17509707 + MGP_AJ_P0091427 Ubl5 protein_coding protein_coding MGP_AJ_T0091428.1 MGP_AJ_G0034401.1 mouse_genomes_project 9 17506813 17509520 + MGP_AJ_P0091428 Ubl5 protein_coding protein_coding MGP_AJ_T0091429.1 MGP_AJ_G0034401.1 mouse_genomes_project 9 17507082 17508392 + MGP_AJ_P0091429 Ubl5 protein_coding protein_coding MGP_AJ_T0091430.1 MGP_AJ_G0034401.1 mouse_genomes_project 9 17507563 17509518 + MGP_AJ_P0091430 Ubl5 protein_coding protein_coding MGP_AJ_T0091431.1 MGP_AJ_G0034401.1 mouse_genomes_project 9 17507576 17508649 + Ubl5 protein_coding retained_intron MGP_AJ_T0091432.1 MGP_AJ_G0034401.1 mouse_genomes_project 9 17507576 17509883 + MGP_AJ_P0091432 Ubl5 protein_coding protein_coding MGP_AJ_T0091433.1 MGP_AJ_G0034401.1 mouse_genomes_project 9 17507577 17509518 + MGP_AJ_P0091433 Ubl5 protein_coding nonsense_mediated_decay MGP_AJ_T0091434.1 MGP_AJ_G0034401.1 mouse_genomes_project 9 17507610 17509512 + MGP_AJ_P0091434 Ubl5 protein_coding protein_coding MGP_AJ_T0091435.1 MGP_AJ_G0034401.1 mouse_genomes_project 9 17507783 17509518 + MGP_AJ_P0091435 Ubl5 protein_coding protein_coding MGP_AJ_T0091436.1 MGP_AJ_G0034401.1 mouse_genomes_project 9 17507960 17509519 + MGP_AJ_P0091436 Ubl5 protein_coding protein_coding MGP_AJ_T0091388.1 MGP_AJ_G0034390.1 mouse_genomes_project 9 17089469 17094347 + MGP_AJ_P0091388 protein_coding protein_coding MGP_AJ_T0095177.1 MGP_AJ_G0035369.1 mouse_genomes_project 9 112664866 112722439 - MGP_AJ_P0095177 Trim71 protein_coding protein_coding MGP_AJ_T0098757.1 MGP_AJ_G0036741.1 mouse_genomes_project 9 94285193 94285275 - Gm27289 rRNA rRNA MGP_AJ_T0093850.1 MGP_AJ_G0035137.1 mouse_genomes_project 9 96279587 96304662 + MGP_AJ_P0093850 Rbp2 protein_coding protein_coding MGP_AJ_T0093851.1 MGP_AJ_G0035137.1 mouse_genomes_project 9 96279638 96304533 + MGP_AJ_P0093851 Rbp2 protein_coding protein_coding MGP_AJ_T0093852.1 MGP_AJ_G0035137.1 mouse_genomes_project 9 96284012 96304652 + MGP_AJ_P0093852 Rbp2 protein_coding protein_coding MGP_AJ_T0093853.1 MGP_AJ_G0035137.1 mouse_genomes_project 9 96285172 96292360 + Rbp2 protein_coding processed_transcript MGP_AJ_T0009232.1 MGP_AJ_G0007418.1 mouse_genomes_project 9 32941076 32949868 - Gm27187 lincRNA lincRNA MGP_AJ_T0009233.1 MGP_AJ_G0007418.1 mouse_genomes_project 9 32941123 32949982 - Gm27187 lincRNA lincRNA MGP_AJ_T0092444.1 MGP_AJ_G0034793.1 mouse_genomes_project 9 50909688 50947815 + MGP_AJ_P0092444 Npat protein_coding protein_coding MGP_AJ_T0092445.1 MGP_AJ_G0034793.1 mouse_genomes_project 9 50909793 50946121 + MGP_AJ_P0092445 Npat protein_coding unknown_likely_coding MGP_AJ_T0092446.1 MGP_AJ_G0034793.1 mouse_genomes_project 9 50936512 50940189 + Npat protein_coding retained_intron MGP_AJ_T0095392.1 MGP_AJ_G0035436.1 mouse_genomes_project 9 120148034 120156918 + MGP_AJ_P0095392 1700048O20Rik protein_coding protein_coding MGP_AJ_T0092232.1 MGP_AJ_G0034725.1 mouse_genomes_project 9 43274474 43280907 - MGP_AJ_P0092232 Tagln protein_coding protein_coding MGP_AJ_T0016123.1 MGP_AJ_G0014218.1 mouse_genomes_project 9 85899201 85899787 + processed_pseudogene processed_pseudogene MGP_AJ_T0091872.1 MGP_AJ_G0034557.1 mouse_genomes_project 9 35081471 35082419 + MGP_AJ_P0091872 Olfr881 protein_coding protein_coding MGP_AJ_T0092261.1 MGP_AJ_G0034732.1 mouse_genomes_project 9 43615004 43618529 + MGP_AJ_P0092261 Apoa5 protein_coding protein_coding MGP_AJ_T0092262.1 MGP_AJ_G0034732.1 mouse_genomes_project 9 43615449 43618529 + MGP_AJ_P0092262 Apoa5 protein_coding protein_coding MGP_AJ_T0011039.1 MGP_AJ_G0009161.1 mouse_genomes_project 9 15024147 15024258 - Gm44498 miRNA miRNA MGP_AJ_T0093965.1 MGP_AJ_G0035165.1 mouse_genomes_project 9 99763816 99768556 + MGP_AJ_P0093965 9630041A04Rik protein_coding protein_coding MGP_AJ_T0002397.1 MGP_AJ_G0002307.1 mouse_genomes_project 9 84331561 84332033 - TEC TEC MGP_AJ_T0002398.1 MGP_AJ_G0002307.1 mouse_genomes_project 9 84331561 84331675 - TEC TEC MGP_AJ_T0095213.1 MGP_AJ_G0035383.1 mouse_genomes_project 9 116245711 116268377 + MGP_AJ_P0095213 Azi2 protein_coding protein_coding MGP_AJ_T0095214.1 MGP_AJ_G0035383.1 mouse_genomes_project 9 116245757 116266581 + MGP_AJ_P0095214 Azi2 protein_coding protein_coding MGP_AJ_T0095215.1 MGP_AJ_G0035383.1 mouse_genomes_project 9 116245794 116276839 + MGP_AJ_P0095215 Azi2 protein_coding nonsense_mediated_decay MGP_AJ_T0095216.1 MGP_AJ_G0035383.1 mouse_genomes_project 9 116245865 116255449 + Azi2 protein_coding retained_intron MGP_AJ_T0095217.1 MGP_AJ_G0035383.1 mouse_genomes_project 9 116254543 116268661 + MGP_AJ_P0095217 Azi2 protein_coding protein_coding MGP_AJ_T0095218.1 MGP_AJ_G0035383.1 mouse_genomes_project 9 116254604 116256888 + Azi2 protein_coding retained_intron MGP_AJ_T0095219.1 MGP_AJ_G0035383.1 mouse_genomes_project 9 116256115 116267973 + MGP_AJ_P0095219 Azi2 protein_coding protein_coding MGP_AJ_T0095220.1 MGP_AJ_G0035383.1 mouse_genomes_project 9 116260809 116267875 + Azi2 protein_coding retained_intron MGP_AJ_T0095221.1 MGP_AJ_G0035383.1 mouse_genomes_project 9 116264366 116268432 + MGP_AJ_P0095221 Azi2 protein_coding protein_coding MGP_AJ_T0092163.1 MGP_AJ_G0034702.1 mouse_genomes_project 9 42114204 42193706 - MGP_AJ_P0092163 Kmt2a protein_coding unknown_likely_coding MGP_AJ_T0092164.1 MGP_AJ_G0034702.1 mouse_genomes_project 9 42114205 42193728 - MGP_AJ_P0092164 Kmt2a protein_coding protein_coding MGP_AJ_T0092165.1 MGP_AJ_G0034702.1 mouse_genomes_project 9 42114205 42193706 - MGP_AJ_P0092165 Kmt2a protein_coding protein_coding MGP_AJ_T0092166.1 MGP_AJ_G0034702.1 mouse_genomes_project 9 42126245 42131681 - MGP_AJ_P0092166 Kmt2a protein_coding nonsense_mediated_decay MGP_AJ_T0092167.1 MGP_AJ_G0034702.1 mouse_genomes_project 9 42134300 42159938 - MGP_AJ_P0092167 Kmt2a protein_coding nonsense_mediated_decay MGP_AJ_T0092168.1 MGP_AJ_G0034702.1 mouse_genomes_project 9 42153212 42193728 - MGP_AJ_P0092168 Kmt2a protein_coding protein_coding MGP_AJ_T0092276.1 MGP_AJ_G0034736.1 mouse_genomes_project 9 44370543 44375077 + MGP_AJ_P0092276 protein_coding protein_coding MGP_AJ_T0092033.1 MGP_AJ_G0034661.1 mouse_genomes_project 9 40381294 40389324 - MGP_AJ_P0092033 Tmem136 protein_coding protein_coding MGP_AJ_T0093550.1 MGP_AJ_G0035075.1 mouse_genomes_project 9 84078949 84237027 - MGP_AJ_P0093550 Ube2cbp protein_coding protein_coding MGP_AJ_T0093551.1 MGP_AJ_G0035075.1 mouse_genomes_project 9 84079385 84237027 - MGP_AJ_P0093551 Ube2cbp protein_coding nonsense_mediated_decay MGP_AJ_T0005539.1 MGP_AJ_G0004672.1 mouse_genomes_project 9 105839221 105840539 - Gm37974 antisense antisense MGP_AJ_T0005540.1 MGP_AJ_G0004673.1 mouse_genomes_project 9 105895745 105899718 - 4921523L03Rik antisense antisense MGP_AJ_T0094727.1 MGP_AJ_G0035288.1 mouse_genomes_project 9 106518026 106547161 - MGP_AJ_P0094727 Arih2 protein_coding unknown_likely_coding MGP_AJ_T0094728.1 MGP_AJ_G0035288.1 mouse_genomes_project 9 106518029 106569025 - MGP_AJ_P0094728 Arih2 protein_coding protein_coding MGP_AJ_T0094729.1 MGP_AJ_G0035288.1 mouse_genomes_project 9 106518034 106521675 - Arih2 protein_coding retained_intron MGP_AJ_T0094730.1 MGP_AJ_G0035288.1 mouse_genomes_project 9 106519773 106569030 - MGP_AJ_P0094730 Arih2 protein_coding nonsense_mediated_decay MGP_AJ_T0094731.1 MGP_AJ_G0035288.1 mouse_genomes_project 9 106519895 106523743 - MGP_AJ_P0094731 Arih2 protein_coding nonsense_mediated_decay MGP_AJ_T0094732.1 MGP_AJ_G0035288.1 mouse_genomes_project 9 106520030 106522420 - Arih2 protein_coding retained_intron MGP_AJ_T0094733.1 MGP_AJ_G0035288.1 mouse_genomes_project 9 106520361 106523023 - Arih2 protein_coding retained_intron MGP_AJ_T0094734.1 MGP_AJ_G0035288.1 mouse_genomes_project 9 106524955 106569031 - MGP_AJ_P0094734 Arih2 protein_coding protein_coding MGP_AJ_T0094735.1 MGP_AJ_G0035288.1 mouse_genomes_project 9 106525039 106561236 - MGP_AJ_P0094735 Arih2 protein_coding nonsense_mediated_decay MGP_AJ_T0094736.1 MGP_AJ_G0035288.1 mouse_genomes_project 9 106529823 106546507 - Arih2 protein_coding retained_intron MGP_AJ_T0094737.1 MGP_AJ_G0035288.1 mouse_genomes_project 9 106530823 106568963 - Arih2 protein_coding retained_intron MGP_AJ_T0094738.1 MGP_AJ_G0035288.1 mouse_genomes_project 9 106531840 106568987 - MGP_AJ_P0094738 Arih2 protein_coding nonsense_mediated_decay MGP_AJ_T0094739.1 MGP_AJ_G0035288.1 mouse_genomes_project 9 106563387 106569014 - Arih2 protein_coding retained_intron MGP_AJ_T0002411.1 MGP_AJ_G0002320.1 mouse_genomes_project 9 89128917 89131326 - TEC TEC MGP_AJ_T0009253.1 MGP_AJ_G0007435.1 mouse_genomes_project 9 55395339 55405032 + Gm17322 lincRNA lincRNA MGP_AJ_T0094403.1 MGP_AJ_G0035244.1 mouse_genomes_project 9 105512031 105533528 - MGP_AJ_P0094403 Gnai2 protein_coding protein_coding MGP_AJ_T0094404.1 MGP_AJ_G0035244.1 mouse_genomes_project 9 105512031 105533473 - MGP_AJ_P0094404 Gnai2 protein_coding protein_coding MGP_AJ_T0094405.1 MGP_AJ_G0035244.1 mouse_genomes_project 9 105512846 105513954 - Gnai2 protein_coding retained_intron MGP_AJ_T0094406.1 MGP_AJ_G0035244.1 mouse_genomes_project 9 105513562 105514418 - Gnai2 protein_coding retained_intron MGP_AJ_T0094407.1 MGP_AJ_G0035244.1 mouse_genomes_project 9 105514131 105515277 - Gnai2 protein_coding retained_intron MGP_AJ_T0094408.1 MGP_AJ_G0035244.1 mouse_genomes_project 9 105514406 105524787 - MGP_AJ_P0094408 Gnai2 protein_coding protein_coding MGP_AJ_T0094409.1 MGP_AJ_G0035244.1 mouse_genomes_project 9 105517373 105533495 - Gnai2 protein_coding retained_intron MGP_AJ_T0094410.1 MGP_AJ_G0035244.1 mouse_genomes_project 9 105517809 105518742 - Gnai2 protein_coding retained_intron MGP_AJ_T0094411.1 MGP_AJ_G0035244.1 mouse_genomes_project 9 105517931 105533498 - MGP_AJ_P0094411 Gnai2 protein_coding protein_coding MGP_AJ_T0094412.1 MGP_AJ_G0035244.1 mouse_genomes_project 9 105533260 105533504 - MGP_AJ_P0094412 Gnai2 protein_coding protein_coding MGP_AJ_T0018503.1 MGP_AJ_G0015710.1 mouse_genomes_project 9 32067788 32081981 + 4930581F22Rik processed_transcript processed_transcript MGP_AJ_T0018504.1 MGP_AJ_G0015710.1 mouse_genomes_project 9 32067827 32069330 + 4930581F22Rik processed_transcript processed_transcript MGP_AJ_T0018505.1 MGP_AJ_G0015710.1 mouse_genomes_project 9 32068474 32074700 + 4930581F22Rik processed_transcript processed_transcript MGP_AJ_T0018506.1 MGP_AJ_G0015710.1 mouse_genomes_project 9 32069041 32077450 + 4930581F22Rik processed_transcript processed_transcript MGP_AJ_T0018507.1 MGP_AJ_G0015710.1 mouse_genomes_project 9 32069125 32075128 + 4930581F22Rik processed_transcript processed_transcript MGP_AJ_T0018508.1 MGP_AJ_G0015710.1 mouse_genomes_project 9 32069255 32077957 + 4930581F22Rik processed_transcript processed_transcript MGP_AJ_T0101570.1 MGP_AJ_G0039536.1 mouse_genomes_project 9 66103333 66103406 + Gm22962 snoRNA snoRNA MGP_AJ_T0092880.1 MGP_AJ_G0034918.1 mouse_genomes_project 9 61703078 61772895 - MGP_AJ_P0092880 Map2k1 protein_coding protein_coding MGP_AJ_T0092881.1 MGP_AJ_G0034918.1 mouse_genomes_project 9 61703837 61705173 - Map2k1 protein_coding retained_intron MGP_AJ_T0092882.1 MGP_AJ_G0034918.1 mouse_genomes_project 9 61704045 61705565 - Map2k1 protein_coding retained_intron MGP_AJ_T0092883.1 MGP_AJ_G0034918.1 mouse_genomes_project 9 61704597 61712987 - Map2k1 protein_coding processed_transcript MGP_AJ_T0005476.1 MGP_AJ_G0004629.1 mouse_genomes_project 9 73582076 73690172 - Gm26903 antisense antisense MGP_AJ_T0011748.1 MGP_AJ_G0009870.1 mouse_genomes_project 9 109321686 109321962 - Gm24860 misc_RNA misc_RNA MGP_AJ_T0092330.1 MGP_AJ_G0034760.1 mouse_genomes_project 9 47939847 47944325 - MGP_AJ_P0092330 Tex12 protein_coding protein_coding MGP_AJ_T0092180.1 MGP_AJ_G0034706.1 mouse_genomes_project 9 42294934 42306258 + MGP_AJ_P0092180 Cd3d protein_coding protein_coding MGP_AJ_T0101531.1 MGP_AJ_G0039497.1 mouse_genomes_project 9 12228372 12228495 + Gm25500 snoRNA snoRNA MGP_AJ_T0091368.1 MGP_AJ_G0034370.1 mouse_genomes_project 9 16270627 16271569 - MGP_AJ_P0091368 Olfr846 protein_coding protein_coding MGP_AJ_T0098760.1 MGP_AJ_G0036744.1 mouse_genomes_project 9 100373771 100373883 + Gm25669 rRNA rRNA MGP_AJ_T0093925.1 MGP_AJ_G0035158.1 mouse_genomes_project 9 98333224 98388106 - MGP_AJ_P0093925 Nck1 protein_coding protein_coding MGP_AJ_T0093926.1 MGP_AJ_G0035158.1 mouse_genomes_project 9 98335932 98347771 - MGP_AJ_P0093926 Nck1 protein_coding protein_coding MGP_AJ_T0093927.1 MGP_AJ_G0035158.1 mouse_genomes_project 9 98338510 98388094 - MGP_AJ_P0093927 Nck1 protein_coding protein_coding MGP_AJ_T0093928.1 MGP_AJ_G0035158.1 mouse_genomes_project 9 98338733 98387703 - MGP_AJ_P0093928 Nck1 protein_coding protein_coding MGP_AJ_T0002377.1 MGP_AJ_G0002287.1 mouse_genomes_project 9 70332006 70335508 + TEC TEC MGP_AJ_T0093827.1 MGP_AJ_G0035130.1 mouse_genomes_project 9 94736236 94812256 - MGP_AJ_P0093827 Spsb4 protein_coding protein_coding MGP_AJ_T0093828.1 MGP_AJ_G0035130.1 mouse_genomes_project 9 94736239 94776904 - Spsb4 protein_coding processed_transcript MGP_AJ_T0093829.1 MGP_AJ_G0035130.1 mouse_genomes_project 9 94736726 94764684 - Spsb4 protein_coding processed_transcript MGP_AJ_T0093830.1 MGP_AJ_G0035130.1 mouse_genomes_project 9 94786764 94812177 - Spsb4 protein_coding retained_intron MGP_AJ_T0016180.1 MGP_AJ_G0014275.1 mouse_genomes_project 9 115249578 115250128 + processed_pseudogene processed_pseudogene MGP_AJ_T0094011.1 MGP_AJ_G0035175.1 mouse_genomes_project 9 101027068 101068868 - MGP_AJ_P0094011 Gm20425 protein_coding protein_coding MGP_AJ_T0016052.1 MGP_AJ_G0014147.1 mouse_genomes_project 9 28243623 28244001 + processed_pseudogene processed_pseudogene MGP_AJ_T0009357.1 MGP_AJ_G0007515.1 mouse_genomes_project 9 118105513 118107674 - Gm2449 lincRNA lincRNA MGP_AJ_T0092935.1 MGP_AJ_G0034938.1 mouse_genomes_project 9 62948640 62958930 - MGP_AJ_P0092935 Slc51b protein_coding protein_coding MGP_AJ_T0091309.1 MGP_AJ_G0034342.1 mouse_genomes_project 9 12222034 12227925 + MGP_AJ_P0091309 Taf1d protein_coding protein_coding MGP_AJ_T0091310.1 MGP_AJ_G0034342.1 mouse_genomes_project 9 12222034 12227925 + MGP_AJ_P0091310 Taf1d protein_coding protein_coding MGP_AJ_T0094104.1 MGP_AJ_G0035192.1 mouse_genomes_project 9 103016501 103018248 - MGP_AJ_P0094104 1700080E11Rik protein_coding protein_coding MGP_AJ_T0094105.1 MGP_AJ_G0035192.1 mouse_genomes_project 9 103017467 103018232 - MGP_AJ_P0094105 1700080E11Rik protein_coding protein_coding MGP_AJ_T0009359.1 MGP_AJ_G0007517.1 mouse_genomes_project 9 120512880 120517668 - Gm26797 lincRNA lincRNA MGP_AJ_T0002458.1 MGP_AJ_G0002367.1 mouse_genomes_project 9 106096962 106097780 - TEC TEC MGP_AJ_T0091613.1 MGP_AJ_G0034477.1 mouse_genomes_project 9 23640609 23668319 + MGP_AJ_P0091613 B3gat1 protein_coding protein_coding MGP_AJ_T0091614.1 MGP_AJ_G0034477.1 mouse_genomes_project 9 23640684 23663048 + MGP_AJ_P0091614 B3gat1 protein_coding protein_coding MGP_AJ_T0091615.1 MGP_AJ_G0034477.1 mouse_genomes_project 9 23640705 23670028 + MGP_AJ_P0091615 B3gat1 protein_coding protein_coding MGP_AJ_T0091616.1 MGP_AJ_G0034477.1 mouse_genomes_project 9 23640732 23664951 + MGP_AJ_P0091616 B3gat1 protein_coding protein_coding MGP_AJ_T0091617.1 MGP_AJ_G0034477.1 mouse_genomes_project 9 23658443 23668307 + MGP_AJ_P0091617 B3gat1 protein_coding protein_coding MGP_AJ_T0091618.1 MGP_AJ_G0034477.1 mouse_genomes_project 9 23662252 23670034 + MGP_AJ_P0091618 B3gat1 protein_coding protein_coding MGP_AJ_T0092256.1 MGP_AJ_G0034730.1 mouse_genomes_project 9 43578726 43581109 - MGP_AJ_P0092256 Apoc3 protein_coding protein_coding MGP_AJ_T0092257.1 MGP_AJ_G0034730.1 mouse_genomes_project 9 43578844 43581148 - MGP_AJ_P0092257 Apoc3 protein_coding protein_coding MGP_AJ_T0092258.1 MGP_AJ_G0034730.1 mouse_genomes_project 9 43578991 43581485 - MGP_AJ_P0092258 Apoc3 protein_coding protein_coding MGP_AJ_T0092259.1 MGP_AJ_G0034730.1 mouse_genomes_project 9 43580284 43581318 - MGP_AJ_P0092259 Apoc3 protein_coding protein_coding MGP_AJ_T0092728.1 MGP_AJ_G0034882.1 mouse_genomes_project 9 57002987 57028564 + MGP_AJ_P0092728 Hexa protein_coding protein_coding MGP_AJ_T0091861.1 MGP_AJ_G0034550.1 mouse_genomes_project 9 34696262 34704350 - Tbrg1 protein_coding retained_intron MGP_AJ_T0091862.1 MGP_AJ_G0034550.1 mouse_genomes_project 9 34696262 34704449 - MGP_AJ_P0091862 Tbrg1 protein_coding protein_coding MGP_AJ_T0091863.1 MGP_AJ_G0034550.1 mouse_genomes_project 9 34698996 34704295 - Tbrg1 protein_coding retained_intron MGP_AJ_T0091864.1 MGP_AJ_G0034550.1 mouse_genomes_project 9 34700967 34704305 - Tbrg1 protein_coding retained_intron MGP_AJ_T0091384.1 MGP_AJ_G0034386.1 mouse_genomes_project 9 16934635 16935631 - MGP_AJ_P0091384 Olfr867 protein_coding protein_coding MGP_AJ_T0005467.1 MGP_AJ_G0004622.1 mouse_genomes_project 9 66956109 66971439 - Gm15511 antisense antisense MGP_AJ_T0093917.1 MGP_AJ_G0035156.1 mouse_genomes_project 9 97688100 97690173 - MGP_AJ_P0093917 Sox14 protein_coding protein_coding MGP_AJ_T0093918.1 MGP_AJ_G0035156.1 mouse_genomes_project 9 97688214 97689659 - MGP_AJ_P0093918 Sox14 protein_coding protein_coding MGP_AJ_T0018544.1 MGP_AJ_G0015722.1 mouse_genomes_project 9 72495365 72500249 + Gm16551 processed_transcript lincRNA MGP_AJ_T0018545.1 MGP_AJ_G0015722.1 mouse_genomes_project 9 72495824 72507409 + Gm16551 processed_transcript lincRNA MGP_AJ_T0018546.1 MGP_AJ_G0015722.1 mouse_genomes_project 9 72495890 72496755 + Gm16551 processed_transcript retained_intron MGP_AJ_T0018547.1 MGP_AJ_G0015722.1 mouse_genomes_project 9 72495913 72500248 + Gm16551 processed_transcript lincRNA MGP_AJ_T0018548.1 MGP_AJ_G0015722.1 mouse_genomes_project 9 72496382 72498580 + Gm16551 processed_transcript retained_intron MGP_AJ_T0094708.1 MGP_AJ_G0035284.1 mouse_genomes_project 9 106482109 106483143 - Ndufaf3 protein_coding retained_intron MGP_AJ_T0094709.1 MGP_AJ_G0035284.1 mouse_genomes_project 9 106482191 106483160 - MGP_AJ_P0094709 Ndufaf3 protein_coding protein_coding MGP_AJ_T0094710.1 MGP_AJ_G0035284.1 mouse_genomes_project 9 106482409 106483163 - Ndufaf3 protein_coding retained_intron MGP_AJ_T0093524.1 MGP_AJ_G0035069.1 mouse_genomes_project 9 81540663 81568629 - MGP_AJ_P0093524 Elovl4 protein_coding protein_coding MGP_AJ_T0093525.1 MGP_AJ_G0035069.1 mouse_genomes_project 9 81542633 81568654 - MGP_AJ_P0093525 Elovl4 protein_coding protein_coding MGP_AJ_T0005551.1 MGP_AJ_G0004684.1 mouse_genomes_project 9 113338132 113343770 - Gm4665 antisense antisense MGP_AJ_T0005478.1 MGP_AJ_G0004631.1 mouse_genomes_project 9 76175611 76176815 - 4930542C12Rik antisense antisense MGP_AJ_T0094177.1 MGP_AJ_G0035205.1 mouse_genomes_project 9 104128843 104142928 - MGP_AJ_P0094177 Alas1 protein_coding protein_coding MGP_AJ_T0094178.1 MGP_AJ_G0035205.1 mouse_genomes_project 9 104128846 104143324 - MGP_AJ_P0094178 Alas1 protein_coding protein_coding MGP_AJ_T0094179.1 MGP_AJ_G0035205.1 mouse_genomes_project 9 104129331 104143054 - MGP_AJ_P0094179 Alas1 protein_coding protein_coding MGP_AJ_T0094180.1 MGP_AJ_G0035205.1 mouse_genomes_project 9 104129346 104139006 - Alas1 protein_coding processed_transcript MGP_AJ_T0094181.1 MGP_AJ_G0035205.1 mouse_genomes_project 9 104129599 104134121 - MGP_AJ_P0094181 Alas1 protein_coding nonsense_mediated_decay MGP_AJ_T0094182.1 MGP_AJ_G0035205.1 mouse_genomes_project 9 104130791 104132474 - Alas1 protein_coding retained_intron MGP_AJ_T0094183.1 MGP_AJ_G0035205.1 mouse_genomes_project 9 104132067 104135422 - Alas1 protein_coding retained_intron MGP_AJ_T0094184.1 MGP_AJ_G0035205.1 mouse_genomes_project 9 104134206 104143050 - MGP_AJ_P0094184 Alas1 protein_coding nonsense_mediated_decay MGP_AJ_T0016129.1 MGP_AJ_G0014224.1 mouse_genomes_project 9 88551636 88552237 - processed_pseudogene processed_pseudogene MGP_AJ_T0005512.1 MGP_AJ_G0004652.1 mouse_genomes_project 9 97103978 97109707 - 4930422M22Rik antisense antisense MGP_AJ_T0002362.1 MGP_AJ_G0002272.1 mouse_genomes_project 9 69461073 69462812 - TEC TEC MGP_AJ_T0002346.1 MGP_AJ_G0002256.1 mouse_genomes_project 9 18162012 18164708 + TEC TEC MGP_AJ_T0016155.1 MGP_AJ_G0014250.1 mouse_genomes_project 9 97767987 97769044 - processed_pseudogene processed_pseudogene MGP_AJ_T0091184.1 MGP_AJ_G0034299.1 mouse_genomes_project 9 4418350 4433358 + MGP_AJ_P0091184 Mmp1b protein_coding protein_coding MGP_AJ_T0095222.1 MGP_AJ_G0035384.1 mouse_genomes_project 9 116271571 116349510 - MGP_AJ_P0095222 Cmc1 protein_coding protein_coding MGP_AJ_T0095058.1 MGP_AJ_G0035346.1 mouse_genomes_project 9 109005152 109011883 - MGP_AJ_P0095058 Tdgf1 protein_coding protein_coding MGP_AJ_T0095059.1 MGP_AJ_G0035346.1 mouse_genomes_project 9 109005807 109011819 - MGP_AJ_P0095059 Tdgf1 protein_coding nonsense_mediated_decay MGP_AJ_T0095060.1 MGP_AJ_G0035346.1 mouse_genomes_project 9 109007908 109011800 - MGP_AJ_P0095060 Tdgf1 protein_coding protein_coding MGP_AJ_T0095061.1 MGP_AJ_G0035346.1 mouse_genomes_project 9 109008193 109010598 - MGP_AJ_P0095061 Tdgf1 protein_coding protein_coding MGP_AJ_T0009240.1 MGP_AJ_G0007425.1 mouse_genomes_project 9 41770177 41771988 + C030014I23Rik lincRNA lincRNA MGP_AJ_T0009241.1 MGP_AJ_G0007425.1 mouse_genomes_project 9 41771031 41774438 + C030014I23Rik lincRNA lincRNA MGP_AJ_T0095412.1 MGP_AJ_G0035442.1 mouse_genomes_project 9 120935196 120989869 + MGP_AJ_P0095412 Topaz1 protein_coding protein_coding MGP_AJ_T0005498.1 MGP_AJ_G0004643.1 mouse_genomes_project 9 93727215 93744824 - Gm16794 antisense antisense MGP_AJ_T0005499.1 MGP_AJ_G0004643.1 mouse_genomes_project 9 93728101 93740072 - Gm16794 antisense antisense MGP_AJ_T0005500.1 MGP_AJ_G0004643.1 mouse_genomes_project 9 93730153 93740081 - Gm16794 antisense antisense MGP_AJ_T0005501.1 MGP_AJ_G0004643.1 mouse_genomes_project 9 93730840 93740830 - Gm16794 antisense antisense MGP_AJ_T0002438.1 MGP_AJ_G0002347.1 mouse_genomes_project 9 99879202 99883506 - TEC TEC MGP_AJ_T0091889.1 MGP_AJ_G0034573.1 mouse_genomes_project 9 35477852 35479041 + MGP_AJ_P0091889 Olfr251 protein_coding protein_coding MGP_AJ_T0009325.1 MGP_AJ_G0007492.1 mouse_genomes_project 9 100388518 100399077 + Gm29387 lincRNA lincRNA MGP_AJ_T0018542.1 MGP_AJ_G0015721.1 mouse_genomes_project 9 70684784 70687840 + 2310009A05Rik processed_transcript antisense MGP_AJ_T0018543.1 MGP_AJ_G0015721.1 mouse_genomes_project 9 70684796 70687435 + 2310009A05Rik processed_transcript retained_intron MGP_AJ_T0101537.1 MGP_AJ_G0039503.1 mouse_genomes_project 9 12231815 12231915 + snoRNA snoRNA MGP_AJ_T0092623.1 MGP_AJ_G0034853.1 mouse_genomes_project 9 54986341 54992618 - MGP_AJ_P0092623 Cplx3 protein_coding protein_coding MGP_AJ_T0093294.1 MGP_AJ_G0035013.1 mouse_genomes_project 9 72600495 72680432 + MGP_AJ_P0093294 Fam214a protein_coding protein_coding MGP_AJ_T0093295.1 MGP_AJ_G0035013.1 mouse_genomes_project 9 72623937 72680432 + MGP_AJ_P0093295 Fam214a protein_coding protein_coding MGP_AJ_T0016059.1 MGP_AJ_G0014154.1 mouse_genomes_project 9 33506089 33506288 + processed_pseudogene processed_pseudogene MGP_AJ_T0094991.1 MGP_AJ_G0035331.1 mouse_genomes_project 9 108591966 108679037 + MGP_AJ_P0094991 Setd2 protein_coding protein_coding MGP_AJ_T0094992.1 MGP_AJ_G0035331.1 mouse_genomes_project 9 108607333 108679018 + MGP_AJ_P0094992 Setd2 protein_coding nonsense_mediated_decay MGP_AJ_T0094993.1 MGP_AJ_G0035331.1 mouse_genomes_project 9 108610659 108624094 + MGP_AJ_P0094993 Setd2 protein_coding protein_coding MGP_AJ_T0094994.1 MGP_AJ_G0035331.1 mouse_genomes_project 9 108620485 108627413 + Setd2 protein_coding retained_intron MGP_AJ_T0094995.1 MGP_AJ_G0035331.1 mouse_genomes_project 9 108620567 108630206 + Setd2 protein_coding retained_intron MGP_AJ_T0094996.1 MGP_AJ_G0035331.1 mouse_genomes_project 9 108633080 108679011 + MGP_AJ_P0094996 Setd2 protein_coding protein_coding MGP_AJ_T0094997.1 MGP_AJ_G0035331.1 mouse_genomes_project 9 108633342 108653867 + MGP_AJ_P0094997 Setd2 protein_coding nonsense_mediated_decay MGP_AJ_T0094998.1 MGP_AJ_G0035331.1 mouse_genomes_project 9 108653731 108664533 + Setd2 protein_coding retained_intron MGP_AJ_T0094999.1 MGP_AJ_G0035331.1 mouse_genomes_project 9 108661607 108678552 + MGP_AJ_P0094999 Setd2 protein_coding nonsense_mediated_decay MGP_AJ_T0095000.1 MGP_AJ_G0035331.1 mouse_genomes_project 9 108678004 108679011 + Setd2 protein_coding retained_intron MGP_AJ_T0091548.1 MGP_AJ_G0034446.1 mouse_genomes_project 9 18836983 18848779 + MGP_AJ_P0091548 Plppr2 protein_coding protein_coding MGP_AJ_T0091549.1 MGP_AJ_G0034446.1 mouse_genomes_project 9 18838374 18847885 + MGP_AJ_P0091549 Plppr2 protein_coding protein_coding MGP_AJ_T0009315.1 MGP_AJ_G0007482.1 mouse_genomes_project 9 94847509 94867411 - Gm19325 lincRNA lincRNA MGP_AJ_T0092608.1 MGP_AJ_G0034842.1 mouse_genomes_project 9 54513459 54516718 - MGP_AJ_P0092608 Commd4 protein_coding protein_coding MGP_AJ_T0093716.1 MGP_AJ_G0035110.1 mouse_genomes_project 9 90272982 90309583 + MGP_AJ_P0093716 Plscr4 protein_coding protein_coding MGP_AJ_T0093717.1 MGP_AJ_G0035110.1 mouse_genomes_project 9 90273003 90302293 + Plscr4 protein_coding retained_intron MGP_AJ_T0094869.1 MGP_AJ_G0035312.1 mouse_genomes_project 9 107299133 107739647 - protein_coding retained_intron MGP_AJ_T0094870.1 MGP_AJ_G0035312.1 mouse_genomes_project 9 107300563 107739639 - MGP_AJ_P0094870 protein_coding protein_coding MGP_AJ_T0093425.1 MGP_AJ_G0035052.1 mouse_genomes_project 9 76229052 76259469 + MGP_AJ_P0093425 Mto1 protein_coding protein_coding MGP_AJ_T0093426.1 MGP_AJ_G0035052.1 mouse_genomes_project 9 76229052 76259469 + MGP_AJ_P0093426 Mto1 protein_coding nonsense_mediated_decay MGP_AJ_T0093427.1 MGP_AJ_G0035052.1 mouse_genomes_project 9 76229057 76231317 + Mto1 protein_coding retained_intron MGP_AJ_T0093428.1 MGP_AJ_G0035052.1 mouse_genomes_project 9 76249822 76255833 + Mto1 protein_coding retained_intron MGP_AJ_T0093429.1 MGP_AJ_G0035052.1 mouse_genomes_project 9 76250115 76260665 + MGP_AJ_P0093429 Mto1 protein_coding protein_coding MGP_AJ_T0093430.1 MGP_AJ_G0035052.1 mouse_genomes_project 9 76255484 76259150 + Mto1 protein_coding retained_intron MGP_AJ_T0016120.1 MGP_AJ_G0014215.1 mouse_genomes_project 9 85530471 85530973 + processed_pseudogene processed_pseudogene MGP_AJ_T0016111.1 MGP_AJ_G0014206.1 mouse_genomes_project 9 80267127 80267455 + processed_pseudogene processed_pseudogene MGP_AJ_T0092044.1 MGP_AJ_G0034670.1 mouse_genomes_project 9 41350958 41380300 + MGP_AJ_P0092044 Usp2 protein_coding protein_coding MGP_AJ_T0092045.1 MGP_AJ_G0034670.1 mouse_genomes_project 9 41351015 41377839 + MGP_AJ_P0092045 Usp2 protein_coding protein_coding MGP_AJ_T0092046.1 MGP_AJ_G0034670.1 mouse_genomes_project 9 41353365 41378669 + MGP_AJ_P0092046 Usp2 protein_coding protein_coding MGP_AJ_T0092047.1 MGP_AJ_G0034670.1 mouse_genomes_project 9 41356107 41359826 + MGP_AJ_P0092047 Usp2 protein_coding protein_coding MGP_AJ_T0092048.1 MGP_AJ_G0034670.1 mouse_genomes_project 9 41368849 41377836 + MGP_AJ_P0092048 Usp2 protein_coding protein_coding MGP_AJ_T0092049.1 MGP_AJ_G0034670.1 mouse_genomes_project 9 41368850 41379154 + MGP_AJ_P0092049 Usp2 protein_coding protein_coding MGP_AJ_T0092050.1 MGP_AJ_G0034670.1 mouse_genomes_project 9 41371090 41376417 + MGP_AJ_P0092050 Usp2 protein_coding nonsense_mediated_decay MGP_AJ_T0092051.1 MGP_AJ_G0034670.1 mouse_genomes_project 9 41376384 41379040 + Usp2 protein_coding processed_transcript MGP_AJ_T0092052.1 MGP_AJ_G0034670.1 mouse_genomes_project 9 41376590 41377843 + Usp2 protein_coding processed_transcript MGP_AJ_T0100304.1 MGP_AJ_G0038270.1 mouse_genomes_project 9 101372543 101372646 - Gm26360 snRNA snRNA MGP_AJ_T0002430.1 MGP_AJ_G0002339.1 mouse_genomes_project 9 98939938 98941540 + TEC TEC MGP_AJ_T0091440.1 MGP_AJ_G0034404.1 mouse_genomes_project 9 17638081 17684148 - MGP_AJ_P0091440 Col5a3 protein_coding protein_coding MGP_AJ_T0091441.1 MGP_AJ_G0034404.1 mouse_genomes_project 9 17650841 17684148 - Col5a3 protein_coding retained_intron MGP_AJ_T0009339.1 MGP_AJ_G0007503.1 mouse_genomes_project 9 106871013 106871370 - Gm38004 lincRNA lincRNA MGP_AJ_T0092436.1 MGP_AJ_G0034790.1 mouse_genomes_project 9 50756162 50773960 + MGP_AJ_P0092436 Kdelc2 protein_coding protein_coding MGP_AJ_T0091640.1 MGP_AJ_G0034486.1 mouse_genomes_project 9 24225354 24256270 + MGP_AJ_P0091640 Igsf9b protein_coding protein_coding MGP_AJ_T0091641.1 MGP_AJ_G0034486.1 mouse_genomes_project 9 24225356 24260898 + MGP_AJ_P0091641 Igsf9b protein_coding protein_coding MGP_AJ_T0091642.1 MGP_AJ_G0034486.1 mouse_genomes_project 9 24225580 24272113 + MGP_AJ_P0091642 Igsf9b protein_coding unknown_likely_coding MGP_AJ_T0101572.1 MGP_AJ_G0039538.1 mouse_genomes_project 9 68104904 68105017 + Gm24615 snoRNA snoRNA MGP_AJ_T0016080.1 MGP_AJ_G0014175.1 mouse_genomes_project 9 69530532 69531241 + processed_pseudogene processed_pseudogene MGP_AJ_T0092459.1 MGP_AJ_G0034796.1 mouse_genomes_project 9 51056865 51078959 - MGP_AJ_P0092459 Rab39 protein_coding protein_coding MGP_AJ_T0093724.1 MGP_AJ_G0035113.1 mouse_genomes_project 9 92446463 93006761 + MGP_AJ_P0093724 Slc9a9 protein_coding protein_coding MGP_AJ_T0093725.1 MGP_AJ_G0035113.1 mouse_genomes_project 9 92446486 92496153 + Slc9a9 protein_coding processed_transcript MGP_AJ_T0093726.1 MGP_AJ_G0035113.1 mouse_genomes_project 9 92709856 93006768 + MGP_AJ_P0093726 Slc9a9 protein_coding unknown_likely_coding MGP_AJ_T0093727.1 MGP_AJ_G0035113.1 mouse_genomes_project 9 92896838 92899709 + Slc9a9 protein_coding retained_intron MGP_AJ_T0092609.1 MGP_AJ_G0034843.1 mouse_genomes_project 9 54605983 54620102 + MGP_AJ_P0092609 Trcg1 protein_coding protein_coding MGP_AJ_T0092851.1 MGP_AJ_G0034912.1 mouse_genomes_project 9 61154390 61265338 - MGP_AJ_P0092851 Smad3 protein_coding protein_coding MGP_AJ_T0092852.1 MGP_AJ_G0034912.1 mouse_genomes_project 9 61162391 61174153 - MGP_AJ_P0092852 Smad3 protein_coding protein_coding MGP_AJ_T0092853.1 MGP_AJ_G0034912.1 mouse_genomes_project 9 61162419 61219289 - MGP_AJ_P0092853 Smad3 protein_coding protein_coding MGP_AJ_T0092854.1 MGP_AJ_G0034912.1 mouse_genomes_project 9 61173753 61258472 - MGP_AJ_P0092854 Smad3 protein_coding protein_coding MGP_AJ_T0092855.1 MGP_AJ_G0034912.1 mouse_genomes_project 9 61175418 61250374 - Smad3 protein_coding processed_transcript MGP_AJ_T0091468.1 MGP_AJ_G0034421.1 mouse_genomes_project 9 18048222 18098375 + MGP_AJ_P0091468 Pde4a protein_coding protein_coding MGP_AJ_T0091469.1 MGP_AJ_G0034421.1 mouse_genomes_project 9 18065095 18096754 + Pde4a protein_coding retained_intron MGP_AJ_T0091470.1 MGP_AJ_G0034421.1 mouse_genomes_project 9 18067648 18078241 + Pde4a protein_coding retained_intron MGP_AJ_T0091471.1 MGP_AJ_G0034421.1 mouse_genomes_project 9 18067650 18096754 + MGP_AJ_P0091471 Pde4a protein_coding protein_coding MGP_AJ_T0091472.1 MGP_AJ_G0034421.1 mouse_genomes_project 9 18076939 18079580 + Pde4a protein_coding retained_intron MGP_AJ_T0091473.1 MGP_AJ_G0034421.1 mouse_genomes_project 9 18081553 18096754 + MGP_AJ_P0091473 Pde4a protein_coding protein_coding MGP_AJ_T0094007.1 MGP_AJ_G0035173.1 mouse_genomes_project 9 100945162 100999790 + Rab6b protein_coding processed_transcript MGP_AJ_T0094008.1 MGP_AJ_G0035173.1 mouse_genomes_project 9 100945182 101022419 + MGP_AJ_P0094008 Rab6b protein_coding protein_coding MGP_AJ_T0091555.1 MGP_AJ_G0034451.1 mouse_genomes_project 9 18907124 18918310 + MGP_AJ_P0091555 Prkcsh protein_coding protein_coding MGP_AJ_T0091556.1 MGP_AJ_G0034451.1 mouse_genomes_project 9 18907124 18918310 + MGP_AJ_P0091556 Prkcsh protein_coding protein_coding MGP_AJ_T0094389.1 MGP_AJ_G0035243.1 mouse_genomes_project 9 105495560 105503423 - MGP_AJ_P0094389 Sema3b protein_coding nonsense_mediated_decay MGP_AJ_T0094390.1 MGP_AJ_G0035243.1 mouse_genomes_project 9 105496103 105507132 - MGP_AJ_P0094390 Sema3b protein_coding protein_coding MGP_AJ_T0094391.1 MGP_AJ_G0035243.1 mouse_genomes_project 9 105496239 105507102 - MGP_AJ_P0094391 Sema3b protein_coding protein_coding MGP_AJ_T0094392.1 MGP_AJ_G0035243.1 mouse_genomes_project 9 105496240 105504560 - MGP_AJ_P0094392 Sema3b protein_coding protein_coding MGP_AJ_T0094393.1 MGP_AJ_G0035243.1 mouse_genomes_project 9 105496241 105507096 - MGP_AJ_P0094393 Sema3b protein_coding protein_coding MGP_AJ_T0094394.1 MGP_AJ_G0035243.1 mouse_genomes_project 9 105496241 105503304 - MGP_AJ_P0094394 Sema3b protein_coding protein_coding MGP_AJ_T0094395.1 MGP_AJ_G0035243.1 mouse_genomes_project 9 105497694 105499198 - Sema3b protein_coding retained_intron MGP_AJ_T0094396.1 MGP_AJ_G0035243.1 mouse_genomes_project 9 105499506 105500058 - Sema3b protein_coding retained_intron MGP_AJ_T0094397.1 MGP_AJ_G0035243.1 mouse_genomes_project 9 105501043 105503171 - MGP_AJ_P0094397 Sema3b protein_coding protein_coding MGP_AJ_T0094398.1 MGP_AJ_G0035243.1 mouse_genomes_project 9 105501198 105504820 - MGP_AJ_P0094398 Sema3b protein_coding protein_coding MGP_AJ_T0094399.1 MGP_AJ_G0035243.1 mouse_genomes_project 9 105501230 105504587 - MGP_AJ_P0094399 Sema3b protein_coding protein_coding MGP_AJ_T0094400.1 MGP_AJ_G0035243.1 mouse_genomes_project 9 105502050 105504585 - MGP_AJ_P0094400 Sema3b protein_coding protein_coding MGP_AJ_T0094401.1 MGP_AJ_G0035243.1 mouse_genomes_project 9 105502948 105507123 - MGP_AJ_P0094401 Sema3b protein_coding protein_coding MGP_AJ_T0094402.1 MGP_AJ_G0035243.1 mouse_genomes_project 9 105502992 105505089 - Sema3b protein_coding processed_transcript MGP_AJ_T0095095.1 MGP_AJ_G0035352.1 mouse_genomes_project 9 109305322 109347523 - MGP_AJ_P0095095 Mlh1 protein_coding nonsense_mediated_decay MGP_AJ_T0095096.1 MGP_AJ_G0035352.1 mouse_genomes_project 9 109305349 109347768 - MGP_AJ_P0095096 Mlh1 protein_coding protein_coding MGP_AJ_T0095097.1 MGP_AJ_G0035352.1 mouse_genomes_project 9 109305626 109307731 - Mlh1 protein_coding retained_intron MGP_AJ_T0095098.1 MGP_AJ_G0035352.1 mouse_genomes_project 9 109306964 109308043 - Mlh1 protein_coding retained_intron MGP_AJ_T0095099.1 MGP_AJ_G0035352.1 mouse_genomes_project 9 109306982 109347577 - Mlh1 protein_coding retained_intron MGP_AJ_T0095100.1 MGP_AJ_G0035352.1 mouse_genomes_project 9 109318373 109324840 - Mlh1 protein_coding retained_intron MGP_AJ_T0095101.1 MGP_AJ_G0035352.1 mouse_genomes_project 9 109318659 109333848 - MGP_AJ_P0095101 Mlh1 protein_coding protein_coding MGP_AJ_T0095102.1 MGP_AJ_G0035352.1 mouse_genomes_project 9 109326317 109337931 - MGP_AJ_P0095102 Mlh1 protein_coding nonsense_mediated_decay MGP_AJ_T0095103.1 MGP_AJ_G0035352.1 mouse_genomes_project 9 109333544 109347511 - Mlh1 protein_coding processed_transcript MGP_AJ_T0091874.1 MGP_AJ_G0034559.1 mouse_genomes_project 9 35134233 35135806 + MGP_AJ_P0091874 Olfr884 protein_coding protein_coding MGP_AJ_T0091875.1 MGP_AJ_G0034559.1 mouse_genomes_project 9 35134876 35135806 + MGP_AJ_P0091875 Olfr884 protein_coding protein_coding MGP_AJ_T0092563.1 MGP_AJ_G0034831.1 mouse_genomes_project 9 53762640 53841588 + MGP_AJ_P0092563 Hmg20a protein_coding protein_coding MGP_AJ_T0094056.1 MGP_AJ_G0035183.1 mouse_genomes_project 9 101891397 101928223 + MGP_AJ_P0094056 Gm28305 protein_coding protein_coding MGP_AJ_T0016144.1 MGP_AJ_G0014239.1 mouse_genomes_project 9 93454061 93454650 - processed_pseudogene processed_pseudogene MGP_AJ_T0091775.1 MGP_AJ_G0034522.1 mouse_genomes_project 9 32730798 32744211 - MGP_AJ_P0091775 Gm27235 protein_coding nonsense_mediated_decay MGP_AJ_T0101539.1 MGP_AJ_G0039505.1 mouse_genomes_project 9 12241591 12241661 - Scarna9 snoRNA snoRNA MGP_AJ_T0002466.1 MGP_AJ_G0002375.1 mouse_genomes_project 9 108094382 108096004 + TEC TEC MGP_AJ_T0101591.1 MGP_AJ_G0039557.1 mouse_genomes_project 9 102339660 102339802 - Gm25904 snoRNA snoRNA MGP_AJ_T0091860.1 MGP_AJ_G0034549.1 mouse_genomes_project 9 34659986 34695398 + MGP_AJ_P0091860 Siae protein_coding protein_coding MGP_AJ_T0098748.1 MGP_AJ_G0036732.1 mouse_genomes_project 9 31930387 31930517 + Gm23702 rRNA rRNA MGP_AJ_T0092460.1 MGP_AJ_G0034797.1 mouse_genomes_project 9 51143585 51189872 + MGP_AJ_P0092460 Slc35f2 protein_coding protein_coding MGP_AJ_T0093417.1 MGP_AJ_G0035045.1 mouse_genomes_project 9 76078764 76101119 - MGP_AJ_P0093417 Gm8074 protein_coding protein_coding MGP_AJ_T0093620.1 MGP_AJ_G0035089.1 mouse_genomes_project 9 86166911 86216270 - MGP_AJ_P0093620 Gm20537 protein_coding nonsense_mediated_decay MGP_AJ_T0093622.1 MGP_AJ_G0035089.1 mouse_genomes_project 9 86180244 86216155 - MGP_AJ_P0093622 Gm20537 protein_coding nonsense_mediated_decay MGP_AJ_T0093149.1 MGP_AJ_G0034988.1 mouse_genomes_project 9 68831862 68912937 + MGP_AJ_P0093149 Aldh1a2 protein_coding protein_coding MGP_AJ_T0018499.1 MGP_AJ_G0015708.1 mouse_genomes_project 9 12245900 12250673 + Gm16568 processed_transcript processed_transcript MGP_AJ_T0016151.1 MGP_AJ_G0014246.1 mouse_genomes_project 9 95043198 95043484 - processed_pseudogene processed_pseudogene MGP_AJ_T0009242.1 MGP_AJ_G0007426.1 mouse_genomes_project 9 42750586 42765760 - 4833428L15Rik lincRNA lincRNA MGP_AJ_T0098495.1 MGP_AJ_G0036479.1 mouse_genomes_project 9 66432172 66432600 + pseudogene pseudogene MGP_AJ_T0092450.1 MGP_AJ_G0034795.1 mouse_genomes_project 9 50988530 51040267 - MGP_AJ_P0092450 Cul5 protein_coding protein_coding MGP_AJ_T0092451.1 MGP_AJ_G0034795.1 mouse_genomes_project 9 50988530 51042775 - MGP_AJ_P0092451 Cul5 protein_coding protein_coding MGP_AJ_T0092452.1 MGP_AJ_G0034795.1 mouse_genomes_project 9 50990548 50995982 - Cul5 protein_coding retained_intron MGP_AJ_T0092453.1 MGP_AJ_G0034795.1 mouse_genomes_project 9 50990972 51040271 - MGP_AJ_P0092453 Cul5 protein_coding protein_coding MGP_AJ_T0092454.1 MGP_AJ_G0034795.1 mouse_genomes_project 9 51002884 51020461 - Cul5 protein_coding retained_intron MGP_AJ_T0092455.1 MGP_AJ_G0034795.1 mouse_genomes_project 9 51007578 51040247 - Cul5 protein_coding retained_intron MGP_AJ_T0092456.1 MGP_AJ_G0034795.1 mouse_genomes_project 9 51016309 51020557 - Cul5 protein_coding retained_intron MGP_AJ_T0092457.1 MGP_AJ_G0034795.1 mouse_genomes_project 9 51020315 51031372 - Cul5 protein_coding processed_transcript MGP_AJ_T0092458.1 MGP_AJ_G0034795.1 mouse_genomes_project 9 51028043 51039832 - MGP_AJ_P0092458 Cul5 protein_coding nonsense_mediated_decay MGP_AJ_T0091897.1 MGP_AJ_G0034581.1 mouse_genomes_project 9 35636862 35643553 + MGP_AJ_P0091897 protein_coding protein_coding MGP_AJ_T0005491.1 MGP_AJ_G0004640.1 mouse_genomes_project 9 93282969 93285258 + antisense antisense MGP_AJ_T0091413.1 MGP_AJ_G0034399.1 mouse_genomes_project 9 17446205 17460326 + MGP_AJ_P0091413 Zfp846 protein_coding protein_coding MGP_AJ_T0091414.1 MGP_AJ_G0034399.1 mouse_genomes_project 9 17446405 17460328 + MGP_AJ_P0091414 Zfp846 protein_coding nonsense_mediated_decay MGP_AJ_T0091415.1 MGP_AJ_G0034399.1 mouse_genomes_project 9 17452910 17459605 + MGP_AJ_P0091415 Zfp846 protein_coding protein_coding MGP_AJ_T0011746.1 MGP_AJ_G0009868.1 mouse_genomes_project 9 104521810 104522070 + Gm26185 misc_RNA misc_RNA MGP_AJ_T0092207.1 MGP_AJ_G0034719.1 mouse_genomes_project 9 42737029 42744172 + MGP_AJ_P0092207 Fxyd2 protein_coding protein_coding MGP_AJ_T0092208.1 MGP_AJ_G0034719.1 mouse_genomes_project 9 42740041 42744199 + MGP_AJ_P0092208 Fxyd2 protein_coding unknown_likely_coding MGP_AJ_T0005530.1 MGP_AJ_G0004666.1 mouse_genomes_project 9 105319118 105325840 - Gm17141 antisense antisense MGP_AJ_T0005508.1 MGP_AJ_G0004649.1 mouse_genomes_project 9 95152819 95172851 + Gm15891 antisense antisense MGP_AJ_T0092433.1 MGP_AJ_G0034789.1 mouse_genomes_project 9 50670674 50749816 + MGP_AJ_P0092433 Exph5 protein_coding protein_coding MGP_AJ_T0092434.1 MGP_AJ_G0034789.1 mouse_genomes_project 9 50711002 50741257 + Exph5 protein_coding retained_intron MGP_AJ_T0092435.1 MGP_AJ_G0034789.1 mouse_genomes_project 9 50711107 50726086 + Exph5 protein_coding retained_intron MGP_AJ_T0011097.1 MGP_AJ_G0009219.1 mouse_genomes_project 9 106768119 106768205 + Gm23156 miRNA miRNA MGP_AJ_T0101557.1 MGP_AJ_G0039523.1 mouse_genomes_project 9 42042607 42042742 - Gm24166 snoRNA snoRNA MGP_AJ_T0094573.1 MGP_AJ_G0035264.1 mouse_genomes_project 9 105985917 105990485 + MGP_AJ_P0094573 Mst1 protein_coding protein_coding MGP_AJ_T0094574.1 MGP_AJ_G0035264.1 mouse_genomes_project 9 105985935 105990477 + MGP_AJ_P0094574 Mst1 protein_coding protein_coding MGP_AJ_T0094575.1 MGP_AJ_G0035264.1 mouse_genomes_project 9 105985964 105987796 + MGP_AJ_P0094575 Mst1 protein_coding nonsense_mediated_decay MGP_AJ_T0094576.1 MGP_AJ_G0035264.1 mouse_genomes_project 9 105989786 105990480 + MGP_AJ_P0094576 Mst1 protein_coding protein_coding MGP_AJ_T0009294.1 MGP_AJ_G0007468.1 mouse_genomes_project 9 86392086 86400595 - Gm29415 lincRNA lincRNA MGP_AJ_T0009363.1 MGP_AJ_G0007519.1 mouse_genomes_project 9 121075018 121093107 - A530083I20Rik lincRNA lincRNA MGP_AJ_T0009364.1 MGP_AJ_G0007519.1 mouse_genomes_project 9 121085289 121093093 - A530083I20Rik lincRNA lincRNA MGP_AJ_T0091893.1 MGP_AJ_G0034577.1 mouse_genomes_project 9 35570836 35572137 + MGP_AJ_P0091893 Olfr904 protein_coding protein_coding MGP_AJ_T0091947.1 MGP_AJ_G0034619.1 mouse_genomes_project 9 36805072 36806089 + MGP_AJ_P0091947 Olfr148 protein_coding protein_coding MGP_AJ_T0095303.1 MGP_AJ_G0035411.1 mouse_genomes_project 9 118312532 118315311 + MGP_AJ_P0095303 Ccr8 protein_coding protein_coding MGP_AJ_T0092307.1 MGP_AJ_G0034749.1 mouse_genomes_project 9 46441664 46466619 + MGP_AJ_P0092307 Zw10 protein_coding protein_coding MGP_AJ_T0016169.1 MGP_AJ_G0014264.1 mouse_genomes_project 9 103404021 103404424 - processed_pseudogene processed_pseudogene MGP_AJ_T0093421.1 MGP_AJ_G0035049.1 mouse_genomes_project 9 76176433 76204078 + MGP_AJ_P0093421 Ddx43 protein_coding protein_coding MGP_AJ_T0094849.1 MGP_AJ_G0035305.1 mouse_genomes_project 9 106955600 106965614 + MGP_AJ_P0094849 Ccdc51 protein_coding protein_coding MGP_AJ_T0092254.1 MGP_AJ_G0034729.1 mouse_genomes_project 9 43574364 43576263 + MGP_AJ_P0092254 Apoa1 protein_coding protein_coding MGP_AJ_T0092255.1 MGP_AJ_G0034729.1 mouse_genomes_project 9 43574505 43575770 + Apoa1 protein_coding retained_intron MGP_AJ_T0092569.1 MGP_AJ_G0034835.1 mouse_genomes_project 9 54270746 54281897 - MGP_AJ_P0092569 Snx33 protein_coding protein_coding MGP_AJ_T0005438.1 MGP_AJ_G0004606.1 mouse_genomes_project 9 47869812 47888953 - Plet1os antisense antisense MGP_AJ_T0005439.1 MGP_AJ_G0004606.1 mouse_genomes_project 9 47869816 47885951 - Plet1os antisense antisense MGP_AJ_T0009225.1 MGP_AJ_G0007412.1 mouse_genomes_project 9 29990878 30042276 + lincRNA lincRNA MGP_AJ_T0002436.1 MGP_AJ_G0002345.1 mouse_genomes_project 9 99735498 99738609 - TEC TEC MGP_AJ_T0091665.1 MGP_AJ_G0034492.1 mouse_genomes_project 9 27900436 27920797 + MGP_AJ_P0091665 Adamts8 protein_coding protein_coding MGP_AJ_T0091666.1 MGP_AJ_G0034492.1 mouse_genomes_project 9 27901332 27921779 + MGP_AJ_P0091666 Adamts8 protein_coding nonsense_mediated_decay MGP_AJ_T0091580.1 MGP_AJ_G0034465.1 mouse_genomes_project 9 19362977 19383905 - MGP_AJ_P0091580 Rp9 protein_coding protein_coding MGP_AJ_T0002461.1 MGP_AJ_G0002370.1 mouse_genomes_project 9 106457913 106459059 + TEC TEC MGP_AJ_T0009335.1 MGP_AJ_G0007500.1 mouse_genomes_project 9 105491527 105494962 - Lsmem2 lincRNA lincRNA MGP_AJ_T0009320.1 MGP_AJ_G0007487.1 mouse_genomes_project 9 97846689 97859855 + 4930519F24Rik lincRNA lincRNA MGP_AJ_T0095172.1 MGP_AJ_G0035365.1 mouse_genomes_project 9 112204415 112532851 - Crtap protein_coding retained_intron MGP_AJ_T0095173.1 MGP_AJ_G0035365.1 mouse_genomes_project 9 112529897 112546099 - MGP_AJ_P0095173 Crtap protein_coding protein_coding MGP_AJ_T0016048.1 MGP_AJ_G0014143.1 mouse_genomes_project 9 19600673 19601468 - processed_pseudogene processed_pseudogene MGP_AJ_T0002448.1 MGP_AJ_G0002357.1 mouse_genomes_project 9 102113390 102114903 + TEC TEC MGP_AJ_T0092767.1 MGP_AJ_G0034890.1 mouse_genomes_project 9 58053866 58173584 - MGP_AJ_P0092767 Lrrc49 protein_coding nonsense_mediated_decay MGP_AJ_T0092768.1 MGP_AJ_G0034890.1 mouse_genomes_project 9 58054179 58135924 - MGP_AJ_P0092768 Lrrc49 protein_coding protein_coding MGP_AJ_T0092769.1 MGP_AJ_G0034890.1 mouse_genomes_project 9 58072790 58173578 - MGP_AJ_P0092769 Lrrc49 protein_coding protein_coding MGP_AJ_T0092770.1 MGP_AJ_G0034890.1 mouse_genomes_project 9 58072790 58173618 - MGP_AJ_P0092770 Lrrc49 protein_coding protein_coding MGP_AJ_T0092771.1 MGP_AJ_G0034890.1 mouse_genomes_project 9 58072800 58172994 - MGP_AJ_P0092771 Lrrc49 protein_coding protein_coding MGP_AJ_T0092772.1 MGP_AJ_G0034890.1 mouse_genomes_project 9 58072800 58172994 - MGP_AJ_P0092772 Lrrc49 protein_coding protein_coding MGP_AJ_T0092773.1 MGP_AJ_G0034890.1 mouse_genomes_project 9 58073381 58084099 - Lrrc49 protein_coding retained_intron MGP_AJ_T0092774.1 MGP_AJ_G0034890.1 mouse_genomes_project 9 58095240 58173363 - Lrrc49 protein_coding retained_intron MGP_AJ_T0092775.1 MGP_AJ_G0034890.1 mouse_genomes_project 9 58095794 58135833 - Lrrc49 protein_coding processed_transcript MGP_AJ_T0092776.1 MGP_AJ_G0034890.1 mouse_genomes_project 9 58165980 58173132 - MGP_AJ_P0092776 Lrrc49 protein_coding protein_coding MGP_AJ_T0018578.1 MGP_AJ_G0015735.1 mouse_genomes_project 9 101264242 101302407 + 5830418P13Rik processed_transcript antisense MGP_AJ_T0018579.1 MGP_AJ_G0015735.1 mouse_genomes_project 9 101265768 101266909 + 5830418P13Rik processed_transcript retained_intron MGP_AJ_T0018580.1 MGP_AJ_G0015735.1 mouse_genomes_project 9 101265792 101268422 + 5830418P13Rik processed_transcript antisense MGP_AJ_T0092761.1 MGP_AJ_G0034889.1 mouse_genomes_project 9 57450063 57983224 - MGP_AJ_P0092761 Thsd4 protein_coding protein_coding MGP_AJ_T0092762.1 MGP_AJ_G0034889.1 mouse_genomes_project 9 57450063 57997328 - MGP_AJ_P0092762 Thsd4 protein_coding protein_coding MGP_AJ_T0092763.1 MGP_AJ_G0034889.1 mouse_genomes_project 9 57452853 57621541 - MGP_AJ_P0092763 Thsd4 protein_coding protein_coding MGP_AJ_T0092764.1 MGP_AJ_G0034889.1 mouse_genomes_project 9 57476297 57485639 - Thsd4 protein_coding retained_intron MGP_AJ_T0092765.1 MGP_AJ_G0034889.1 mouse_genomes_project 9 57911236 58008337 - MGP_AJ_P0092765 Thsd4 protein_coding protein_coding MGP_AJ_T0092766.1 MGP_AJ_G0034889.1 mouse_genomes_project 9 57996167 57997300 - Thsd4 protein_coding processed_transcript MGP_AJ_T0002432.1 MGP_AJ_G0002341.1 mouse_genomes_project 9 98964289 98970434 + TEC TEC MGP_AJ_T0095488.1 MGP_AJ_G0035471.1 mouse_genomes_project 9 122336277 122341815 + MGP_AJ_P0095488 Ccr5 protein_coding protein_coding MGP_AJ_T0095489.1 MGP_AJ_G0035471.1 mouse_genomes_project 9 122336307 122339900 + Ccr5 protein_coding processed_transcript MGP_AJ_T0095490.1 MGP_AJ_G0035471.1 mouse_genomes_project 9 122336307 122346534 + MGP_AJ_P0095490 Ccr5 protein_coding nonsense_mediated_decay MGP_AJ_T0095491.1 MGP_AJ_G0035471.1 mouse_genomes_project 9 122336315 122339364 + MGP_AJ_P0095491 Ccr5 protein_coding protein_coding MGP_AJ_T0095492.1 MGP_AJ_G0035471.1 mouse_genomes_project 9 122341316 122344883 + Ccr5 protein_coding processed_transcript MGP_AJ_T0095493.1 MGP_AJ_G0035471.1 mouse_genomes_project 9 122343380 122362219 + Ccr5 protein_coding processed_transcript MGP_AJ_T0091840.1 MGP_AJ_G0034542.1 mouse_genomes_project 9 34441212 34453366 + Robo4 protein_coding retained_intron MGP_AJ_T0091841.1 MGP_AJ_G0034542.1 mouse_genomes_project 9 34441212 34453370 + MGP_AJ_P0091841 Robo4 protein_coding protein_coding MGP_AJ_T0091842.1 MGP_AJ_G0034542.1 mouse_genomes_project 9 34441348 34453368 + MGP_AJ_P0091842 Robo4 protein_coding protein_coding MGP_AJ_T0091843.1 MGP_AJ_G0034542.1 mouse_genomes_project 9 34441361 34453369 + MGP_AJ_P0091843 Robo4 protein_coding protein_coding MGP_AJ_T0091364.1 MGP_AJ_G0034366.1 mouse_genomes_project 9 16037800 16038755 + MGP_AJ_P0091364 Olfr836 protein_coding protein_coding MGP_AJ_T0092013.1 MGP_AJ_G0034655.1 mouse_genomes_project 9 39221973 39381455 - MGP_AJ_P0092013 Sorl1 protein_coding protein_coding MGP_AJ_T0092014.1 MGP_AJ_G0034655.1 mouse_genomes_project 9 39226979 39231004 - Sorl1 protein_coding retained_intron MGP_AJ_T0092015.1 MGP_AJ_G0034655.1 mouse_genomes_project 9 39234004 39240985 - Sorl1 protein_coding retained_intron MGP_AJ_T0092016.1 MGP_AJ_G0034655.1 mouse_genomes_project 9 39240922 39242252 - Sorl1 protein_coding processed_transcript MGP_AJ_T0016087.1 MGP_AJ_G0014182.1 mouse_genomes_project 9 70476023 70476330 - processed_pseudogene processed_pseudogene MGP_AJ_T0095067.1 MGP_AJ_G0035349.1 mouse_genomes_project 9 109088088 109109247 + MGP_AJ_P0095067 Ltf protein_coding protein_coding MGP_AJ_T0095068.1 MGP_AJ_G0035349.1 mouse_genomes_project 9 109088109 109111521 + MGP_AJ_P0095068 Ltf protein_coding protein_coding MGP_AJ_T0095069.1 MGP_AJ_G0035349.1 mouse_genomes_project 9 109088109 109091303 + MGP_AJ_P0095069 Ltf protein_coding protein_coding MGP_AJ_T0095070.1 MGP_AJ_G0035349.1 mouse_genomes_project 9 109088109 109109247 + MGP_AJ_P0095070 Ltf protein_coding protein_coding MGP_AJ_T0095071.1 MGP_AJ_G0035349.1 mouse_genomes_project 9 109088127 109093848 + MGP_AJ_P0095071 Ltf protein_coding protein_coding MGP_AJ_T0095072.1 MGP_AJ_G0035349.1 mouse_genomes_project 9 109091255 109096256 + MGP_AJ_P0095072 Ltf protein_coding nonsense_mediated_decay MGP_AJ_T0095073.1 MGP_AJ_G0035349.1 mouse_genomes_project 9 109093225 109094343 + Ltf protein_coding retained_intron MGP_AJ_T0095074.1 MGP_AJ_G0035349.1 mouse_genomes_project 9 109095957 109097329 + Ltf protein_coding retained_intron MGP_AJ_T0095075.1 MGP_AJ_G0035349.1 mouse_genomes_project 9 109096195 109104560 + MGP_AJ_P0095075 Ltf protein_coding protein_coding MGP_AJ_T0095076.1 MGP_AJ_G0035349.1 mouse_genomes_project 9 109099863 109109231 + MGP_AJ_P0095076 Ltf protein_coding nonsense_mediated_decay MGP_AJ_T0095077.1 MGP_AJ_G0035349.1 mouse_genomes_project 9 109104390 109109231 + Ltf protein_coding retained_intron MGP_AJ_T0095078.1 MGP_AJ_G0035349.1 mouse_genomes_project 9 109107558 109111080 + MGP_AJ_P0095078 Ltf protein_coding protein_coding MGP_AJ_T0091226.1 MGP_AJ_G0034316.1 mouse_genomes_project 9 6001928 6247850 - MGP_AJ_P0091226 Arhgap42 protein_coding protein_coding MGP_AJ_T0091227.1 MGP_AJ_G0034316.1 mouse_genomes_project 9 6001984 6247528 - MGP_AJ_P0091227 Arhgap42 protein_coding unknown_likely_coding MGP_AJ_T0091228.1 MGP_AJ_G0034316.1 mouse_genomes_project 9 6018843 6247850 - Arhgap42 protein_coding retained_intron MGP_AJ_T0091229.1 MGP_AJ_G0034316.1 mouse_genomes_project 9 6155234 6247775 - MGP_AJ_P0091229 Arhgap42 protein_coding protein_coding MGP_AJ_T0016074.1 MGP_AJ_G0014169.1 mouse_genomes_project 9 57328034 57328311 - processed_pseudogene processed_pseudogene MGP_AJ_T0092366.1 MGP_AJ_G0034768.1 mouse_genomes_project 9 48126854 48133714 - MGP_AJ_P0092366 2310030G06Rik protein_coding protein_coding MGP_AJ_T0094835.1 MGP_AJ_G0035302.1 mouse_genomes_project 9 106931036 106932838 - MGP_AJ_P0094835 Trex1 protein_coding protein_coding MGP_AJ_T0094837.1 MGP_AJ_G0035302.1 mouse_genomes_project 9 106931041 106932355 - MGP_AJ_P0094837 Trex1 protein_coding protein_coding MGP_AJ_T0093862.1 MGP_AJ_G0035140.1 mouse_genomes_project 9 96655432 96657248 + MGP_AJ_P0093862 protein_coding protein_coding MGP_AJ_T0094379.1 MGP_AJ_G0035241.1 mouse_genomes_project 9 105477829 105483837 + MGP_AJ_P0094379 Hyal3 protein_coding protein_coding MGP_AJ_T0094380.1 MGP_AJ_G0035241.1 mouse_genomes_project 9 105478304 105484228 + MGP_AJ_P0094380 Hyal3 protein_coding protein_coding MGP_AJ_T0094381.1 MGP_AJ_G0035241.1 mouse_genomes_project 9 105481750 105483666 + MGP_AJ_P0094381 Hyal3 protein_coding protein_coding MGP_AJ_T0002450.1 MGP_AJ_G0002359.1 mouse_genomes_project 9 102941726 102945005 + TEC TEC MGP_AJ_T0094166.1 MGP_AJ_G0035202.1 mouse_genomes_project 9 104089314 104094434 - MGP_AJ_P0094166 Ppm1m protein_coding protein_coding MGP_AJ_T0094167.1 MGP_AJ_G0035202.1 mouse_genomes_project 9 104089314 104094100 - MGP_AJ_P0094167 Ppm1m protein_coding protein_coding MGP_AJ_T0094168.1 MGP_AJ_G0035202.1 mouse_genomes_project 9 104090089 104092040 - MGP_AJ_P0094168 Ppm1m protein_coding protein_coding MGP_AJ_T0094169.1 MGP_AJ_G0035202.1 mouse_genomes_project 9 104092686 104093487 - Ppm1m protein_coding retained_intron MGP_AJ_T0094170.1 MGP_AJ_G0035202.1 mouse_genomes_project 9 104093096 104094901 - Ppm1m protein_coding processed_transcript MGP_AJ_T0092624.1 MGP_AJ_G0034854.1 mouse_genomes_project 9 54993421 55007214 - MGP_AJ_P0092624 Lman1l protein_coding protein_coding MGP_AJ_T0092625.1 MGP_AJ_G0034854.1 mouse_genomes_project 9 54993421 55007214 - MGP_AJ_P0092625 Lman1l protein_coding protein_coding MGP_AJ_T0009275.1 MGP_AJ_G0007452.1 mouse_genomes_project 9 72225015 72225811 - Gm28622 lincRNA lincRNA MGP_AJ_T0091952.1 MGP_AJ_G0034624.1 mouse_genomes_project 9 36932163 36933102 + MGP_AJ_P0091952 Olfr965 protein_coding protein_coding MGP_AJ_T0005408.1 MGP_AJ_G0004584.1 mouse_genomes_project 9 4633807 4661387 - AV064505 antisense antisense MGP_AJ_T0005513.1 MGP_AJ_G0004653.1 mouse_genomes_project 9 97528387 97572718 + Gm16004 antisense antisense MGP_AJ_T0091931.1 MGP_AJ_G0034609.1 mouse_genomes_project 9 36407003 36407948 - MGP_AJ_P0091931 Olfr1537 protein_coding protein_coding MGP_AJ_T0092856.1 MGP_AJ_G0034913.1 mouse_genomes_project 9 61466628 61537342 - MGP_AJ_P0092856 Smad6 protein_coding protein_coding MGP_AJ_T0092857.1 MGP_AJ_G0034913.1 mouse_genomes_project 9 61467562 61532270 - Smad6 protein_coding processed_transcript MGP_AJ_T0092858.1 MGP_AJ_G0034913.1 mouse_genomes_project 9 61537043 61537315 - MGP_AJ_P0092858 Smad6 protein_coding protein_coding MGP_AJ_T0095226.1 MGP_AJ_G0035386.1 mouse_genomes_project 9 116711102 116788702 + MGP_AJ_P0095226 Golga4 protein_coding protein_coding MGP_AJ_T0095227.1 MGP_AJ_G0035386.1 mouse_genomes_project 9 116711270 116788472 + MGP_AJ_P0095227 Golga4 protein_coding unknown_likely_coding MGP_AJ_T0011073.1 MGP_AJ_G0009195.1 mouse_genomes_project 9 64807085 64807152 - Mir190a miRNA miRNA MGP_AJ_T0093885.1 MGP_AJ_G0035149.1 mouse_genomes_project 9 97114994 97166631 - MGP_AJ_P0093885 Esyt3 protein_coding protein_coding MGP_AJ_T0093886.1 MGP_AJ_G0035149.1 mouse_genomes_project 9 97124630 97128831 - Esyt3 protein_coding retained_intron MGP_AJ_T0093887.1 MGP_AJ_G0035149.1 mouse_genomes_project 9 97124674 97131138 - MGP_AJ_P0093887 Esyt3 protein_coding protein_coding MGP_AJ_T0093888.1 MGP_AJ_G0035149.1 mouse_genomes_project 9 97140855 97146957 - Esyt3 protein_coding retained_intron MGP_AJ_T0093889.1 MGP_AJ_G0035149.1 mouse_genomes_project 9 97163710 97166670 - Esyt3 protein_coding retained_intron MGP_AJ_T0016107.1 MGP_AJ_G0014202.1 mouse_genomes_project 9 77862917 77863245 - processed_pseudogene processed_pseudogene MGP_AJ_T0009288.1 MGP_AJ_G0007464.1 mouse_genomes_project 9 80989821 81003494 - Gm27216 lincRNA lincRNA MGP_AJ_T0009289.1 MGP_AJ_G0007464.1 mouse_genomes_project 9 80989831 81004012 - Gm27216 lincRNA lincRNA MGP_AJ_T0009290.1 MGP_AJ_G0007464.1 mouse_genomes_project 9 80989848 81003959 - Gm27216 lincRNA lincRNA MGP_AJ_T0092645.1 MGP_AJ_G0034863.1 mouse_genomes_project 9 55403899 55418324 + MGP_AJ_P0092645 Cyp11a1 protein_coding protein_coding MGP_AJ_T0092646.1 MGP_AJ_G0034863.1 mouse_genomes_project 9 55412247 55425844 + MGP_AJ_P0092646 Cyp11a1 protein_coding protein_coding MGP_AJ_T0092647.1 MGP_AJ_G0034863.1 mouse_genomes_project 9 55412573 55419972 + Cyp11a1 protein_coding retained_intron MGP_AJ_T0092648.1 MGP_AJ_G0034863.1 mouse_genomes_project 9 55414982 55424064 + MGP_AJ_P0092648 Cyp11a1 protein_coding protein_coding MGP_AJ_T0005522.1 MGP_AJ_G0004660.1 mouse_genomes_project 9 104143157 104144805 + 4930500F10Rik antisense antisense MGP_AJ_T0098761.1 MGP_AJ_G0036745.1 mouse_genomes_project 9 100844624 100844728 - n-R5s89 rRNA rRNA MGP_AJ_T0002347.1 MGP_AJ_G0002257.1 mouse_genomes_project 9 21642546 21644400 - TEC TEC MGP_AJ_T0091571.1 MGP_AJ_G0034458.1 mouse_genomes_project 9 19065285 19066798 + MGP_AJ_P0091571 Pigyl protein_coding protein_coding MGP_AJ_T0091572.1 MGP_AJ_G0034458.1 mouse_genomes_project 9 19065385 19066765 + MGP_AJ_P0091572 Pigyl protein_coding protein_coding MGP_AJ_T0094496.1 MGP_AJ_G0035254.1 mouse_genomes_project 9 105854276 105875603 + Traip protein_coding retained_intron MGP_AJ_T0094497.1 MGP_AJ_G0035254.1 mouse_genomes_project 9 105855096 105876348 + MGP_AJ_P0094497 Traip protein_coding protein_coding MGP_AJ_T0094498.1 MGP_AJ_G0035254.1 mouse_genomes_project 9 105855107 105862572 + Traip protein_coding processed_transcript MGP_AJ_T0094499.1 MGP_AJ_G0035254.1 mouse_genomes_project 9 105855128 105865130 + MGP_AJ_P0094499 Traip protein_coding protein_coding MGP_AJ_T0094500.1 MGP_AJ_G0035254.1 mouse_genomes_project 9 105864475 105865746 + Traip protein_coding processed_transcript MGP_AJ_T0094501.1 MGP_AJ_G0035254.1 mouse_genomes_project 9 105866256 105872722 + Traip protein_coding retained_intron MGP_AJ_T0094502.1 MGP_AJ_G0035254.1 mouse_genomes_project 9 105866317 105872819 + Traip protein_coding retained_intron MGP_AJ_T0002463.1 MGP_AJ_G0002372.1 mouse_genomes_project 9 106829846 106830385 - TEC TEC MGP_AJ_T0091335.1 MGP_AJ_G0034349.1 mouse_genomes_project 9 13970816 13971839 + MGP_AJ_P0091335 Gm5611 protein_coding protein_coding MGP_AJ_T0093526.1 MGP_AJ_G0035070.1 mouse_genomes_project 9 81596845 81631610 + Ttk protein_coding retained_intron MGP_AJ_T0093527.1 MGP_AJ_G0035070.1 mouse_genomes_project 9 81596846 81634506 + MGP_AJ_P0093527 Ttk protein_coding protein_coding MGP_AJ_T0093528.1 MGP_AJ_G0035070.1 mouse_genomes_project 9 81596873 81634503 + MGP_AJ_P0093528 Ttk protein_coding protein_coding MGP_AJ_T0093529.1 MGP_AJ_G0035070.1 mouse_genomes_project 9 81596889 81599653 + Ttk protein_coding retained_intron MGP_AJ_T0093530.1 MGP_AJ_G0035070.1 mouse_genomes_project 9 81596896 81606487 + Ttk protein_coding processed_transcript MGP_AJ_T0093531.1 MGP_AJ_G0035070.1 mouse_genomes_project 9 81596920 81605152 + MGP_AJ_P0093531 Ttk protein_coding protein_coding MGP_AJ_T0093532.1 MGP_AJ_G0035070.1 mouse_genomes_project 9 81597936 81634185 + MGP_AJ_P0093532 Ttk protein_coding unknown_likely_coding MGP_AJ_T0005460.1 MGP_AJ_G0004618.1 mouse_genomes_project 9 63971483 63974379 - Gm28379 antisense antisense MGP_AJ_T0005461.1 MGP_AJ_G0004618.1 mouse_genomes_project 9 63972040 64002232 - Gm28379 antisense antisense MGP_AJ_T0092381.1 MGP_AJ_G0034773.1 mouse_genomes_project 9 48162726 48231539 + MGP_AJ_P0092381 Alg9 protein_coding protein_coding MGP_AJ_T0092382.1 MGP_AJ_G0034773.1 mouse_genomes_project 9 48163012 48231553 + MGP_AJ_P0092382 Alg9 protein_coding nonsense_mediated_decay MGP_AJ_T0092383.1 MGP_AJ_G0034773.1 mouse_genomes_project 9 48163074 48177239 + MGP_AJ_P0092383 Alg9 protein_coding protein_coding MGP_AJ_T0092384.1 MGP_AJ_G0034773.1 mouse_genomes_project 9 48163256 48171054 + Alg9 protein_coding processed_transcript MGP_AJ_T0092385.1 MGP_AJ_G0034773.1 mouse_genomes_project 9 48163818 48166792 + Alg9 protein_coding processed_transcript MGP_AJ_T0092386.1 MGP_AJ_G0034773.1 mouse_genomes_project 9 48189909 48230774 + MGP_AJ_P0092386 Alg9 protein_coding nonsense_mediated_decay MGP_AJ_T0092387.1 MGP_AJ_G0034773.1 mouse_genomes_project 9 48196805 48231373 + MGP_AJ_P0092387 Alg9 protein_coding protein_coding MGP_AJ_T0092388.1 MGP_AJ_G0034773.1 mouse_genomes_project 9 48210679 48230982 + Alg9 protein_coding processed_transcript MGP_AJ_T0092389.1 MGP_AJ_G0034773.1 mouse_genomes_project 9 48223587 48231102 + Alg9 protein_coding processed_transcript MGP_AJ_T0093773.1 MGP_AJ_G0035122.1 mouse_genomes_project 9 93895265 93960443 + MGP_AJ_P0093773 Gk5 protein_coding protein_coding MGP_AJ_T0093774.1 MGP_AJ_G0035122.1 mouse_genomes_project 9 93895278 93964861 + MGP_AJ_P0093774 Gk5 protein_coding protein_coding MGP_AJ_T0093775.1 MGP_AJ_G0035122.1 mouse_genomes_project 9 93895335 93963063 + MGP_AJ_P0093775 Gk5 protein_coding nonsense_mediated_decay MGP_AJ_T0093776.1 MGP_AJ_G0035122.1 mouse_genomes_project 9 93900174 93913779 + Gk5 protein_coding processed_transcript MGP_AJ_T0093777.1 MGP_AJ_G0035122.1 mouse_genomes_project 9 93951169 93953718 + Gk5 protein_coding retained_intron MGP_AJ_T0093139.1 MGP_AJ_G0034987.1 mouse_genomes_project 9 68730668 68782519 - MGP_AJ_P0093139 Aqp9 protein_coding protein_coding MGP_AJ_T0093140.1 MGP_AJ_G0034987.1 mouse_genomes_project 9 68730670 68782490 - MGP_AJ_P0093140 Aqp9 protein_coding nonsense_mediated_decay MGP_AJ_T0093141.1 MGP_AJ_G0034987.1 mouse_genomes_project 9 68730671 68781863 - MGP_AJ_P0093141 Aqp9 protein_coding protein_coding MGP_AJ_T0093142.1 MGP_AJ_G0034987.1 mouse_genomes_project 9 68731853 68791284 - MGP_AJ_P0093142 Aqp9 protein_coding protein_coding MGP_AJ_T0093143.1 MGP_AJ_G0034987.1 mouse_genomes_project 9 68782202 68788014 - Aqp9 protein_coding processed_transcript MGP_AJ_T0093144.1 MGP_AJ_G0034987.1 mouse_genomes_project 9 68782258 68790520 - Aqp9 protein_coding processed_transcript MGP_AJ_T0093145.1 MGP_AJ_G0034987.1 mouse_genomes_project 9 68782700 68791309 - Aqp9 protein_coding processed_transcript MGP_AJ_T0093146.1 MGP_AJ_G0034987.1 mouse_genomes_project 9 68782700 68790260 - Aqp9 protein_coding processed_transcript MGP_AJ_T0093147.1 MGP_AJ_G0034987.1 mouse_genomes_project 9 68782701 68791304 - Aqp9 protein_coding processed_transcript MGP_AJ_T0093148.1 MGP_AJ_G0034987.1 mouse_genomes_project 9 68787928 68790476 - Aqp9 protein_coding processed_transcript MGP_AJ_T0005504.1 MGP_AJ_G0004646.1 mouse_genomes_project 9 94494522 94500144 + A930006L05Rik antisense antisense MGP_AJ_T0002351.1 MGP_AJ_G0002261.1 mouse_genomes_project 9 29501054 29502863 - TEC TEC MGP_AJ_T0011068.1 MGP_AJ_G0009190.1 mouse_genomes_project 9 59620293 59620370 - Mir5133 miRNA miRNA MGP_AJ_T0091363.1 MGP_AJ_G0034365.1 mouse_genomes_project 9 15943138 15944074 + MGP_AJ_P0091363 Olfr835 protein_coding protein_coding MGP_AJ_T0092190.1 MGP_AJ_G0034712.1 mouse_genomes_project 9 42443394 42456376 + MGP_AJ_P0092190 Scn2b protein_coding protein_coding MGP_AJ_T0092191.1 MGP_AJ_G0034712.1 mouse_genomes_project 9 42443399 42456374 + MGP_AJ_P0092191 Scn2b protein_coding protein_coding MGP_AJ_T0011731.1 MGP_AJ_G0009853.1 mouse_genomes_project 9 94681 94765 - Gm27679 misc_RNA misc_RNA MGP_AJ_T0091186.1 MGP_AJ_G0034301.1 mouse_genomes_project 9 4468313 4476562 + MGP_AJ_P0091186 Mmp10 protein_coding protein_coding MGP_AJ_T0002412.1 MGP_AJ_G0002321.1 mouse_genomes_project 9 89139281 89141100 - TEC TEC MGP_AJ_T0011742.1 MGP_AJ_G0009864.1 mouse_genomes_project 9 86316438 86316728 + Gm26461 misc_RNA misc_RNA MGP_AJ_T0101559.1 MGP_AJ_G0039525.1 mouse_genomes_project 9 49678368 49678501 + Gm25562 snoRNA snoRNA MGP_AJ_T0091147.1 MGP_AJ_G0034288.1 mouse_genomes_project 9 1291637 1679365 - MGP_AJ_P0091147 Gria4 protein_coding protein_coding MGP_AJ_T0091148.1 MGP_AJ_G0034288.1 mouse_genomes_project 9 1291637 1679365 - MGP_AJ_P0091148 Gria4 protein_coding protein_coding MGP_AJ_T0091149.1 MGP_AJ_G0034288.1 mouse_genomes_project 9 1352176 1679365 - MGP_AJ_P0091149 Gria4 protein_coding protein_coding MGP_AJ_T0095158.1 MGP_AJ_G0035360.1 mouse_genomes_project 9 111794631 111841297 + MGP_AJ_P0095158 unknown_likely_coding unknown_likely_coding MGP_AJ_T0005526.1 MGP_AJ_G0004664.1 mouse_genomes_project 9 104792846 104795141 + 4930524O07Rik antisense antisense MGP_AJ_T0005527.1 MGP_AJ_G0004664.1 mouse_genomes_project 9 104793470 104795139 + 4930524O07Rik antisense antisense MGP_AJ_T0005528.1 MGP_AJ_G0004664.1 mouse_genomes_project 9 104793913 104796488 + 4930524O07Rik antisense antisense MGP_AJ_T0092797.1 MGP_AJ_G0034895.1 mouse_genomes_project 9 59409901 59411156 - MGP_AJ_P0092797 Rplp1 protein_coding protein_coding MGP_AJ_T0002415.1 MGP_AJ_G0002324.1 mouse_genomes_project 9 89563130 89563955 - TEC TEC MGP_AJ_T0091608.1 MGP_AJ_G0034474.1 mouse_genomes_project 9 22040880 22084681 - MGP_AJ_P0091608 Herpud2 protein_coding protein_coding MGP_AJ_T0000341.1 MGP_AJ_G0000285.1 mouse_genomes_project 9 121301387 121301454 + mt-Tc Mt_tRNA Mt_tRNA MGP_AJ_T0005543.1 MGP_AJ_G0004676.1 mouse_genomes_project 9 106966973 106970934 - Gm7628 antisense antisense MGP_AJ_T0091449.1 MGP_AJ_G0034408.1 mouse_genomes_project 9 17762765 17766774 + MGP_AJ_P0091449 Ppan protein_coding protein_coding MGP_AJ_T0091450.1 MGP_AJ_G0034408.1 mouse_genomes_project 9 17762840 17764937 + Ppan protein_coding retained_intron MGP_AJ_T0091451.1 MGP_AJ_G0034408.1 mouse_genomes_project 9 17762857 17764278 + Ppan protein_coding retained_intron MGP_AJ_T0091452.1 MGP_AJ_G0034408.1 mouse_genomes_project 9 17762875 17766774 + Ppan protein_coding retained_intron MGP_AJ_T0091453.1 MGP_AJ_G0034408.1 mouse_genomes_project 9 17765233 17765950 + Ppan protein_coding retained_intron MGP_AJ_T0091454.1 MGP_AJ_G0034408.1 mouse_genomes_project 9 17765802 17766278 + Ppan protein_coding retained_intron MGP_AJ_T0005417.1 MGP_AJ_G0004589.1 mouse_genomes_project 9 19098499 19119700 - 1810064F22Rik antisense antisense MGP_AJ_T0005418.1 MGP_AJ_G0004589.1 mouse_genomes_project 9 19109491 19119721 - 1810064F22Rik antisense antisense MGP_AJ_T0005419.1 MGP_AJ_G0004589.1 mouse_genomes_project 9 19110051 19111257 - 1810064F22Rik antisense antisense MGP_AJ_T0002356.1 MGP_AJ_G0002266.1 mouse_genomes_project 9 31518745 31537653 + TEC TEC MGP_AJ_T0092655.1 MGP_AJ_G0034865.1 mouse_genomes_project 9 55469397 55548598 + Stra6 protein_coding retained_intron MGP_AJ_T0092658.1 MGP_AJ_G0034865.1 mouse_genomes_project 9 55484940 55547789 + MGP_AJ_P0092658 Stra6 protein_coding protein_coding MGP_AJ_T0092659.1 MGP_AJ_G0034865.1 mouse_genomes_project 9 55485015 55546002 + MGP_AJ_P0092659 Stra6 protein_coding protein_coding MGP_AJ_T0092662.1 MGP_AJ_G0034865.1 mouse_genomes_project 9 55535654 55560733 + MGP_AJ_P0092662 Stra6 protein_coding protein_coding MGP_AJ_T0092663.1 MGP_AJ_G0034865.1 mouse_genomes_project 9 55535915 55560731 + MGP_AJ_P0092663 Stra6 protein_coding protein_coding MGP_AJ_T0092664.1 MGP_AJ_G0034865.1 mouse_genomes_project 9 55536067 55547438 + MGP_AJ_P0092664 Stra6 protein_coding protein_coding MGP_AJ_T0092665.1 MGP_AJ_G0034865.1 mouse_genomes_project 9 55538472 55547011 + MGP_AJ_P0092665 Stra6 protein_coding protein_coding MGP_AJ_T0092666.1 MGP_AJ_G0034865.1 mouse_genomes_project 9 55540592 55547763 + MGP_AJ_P0092666 Stra6 protein_coding protein_coding MGP_AJ_T0092667.1 MGP_AJ_G0034865.1 mouse_genomes_project 9 55540650 55560774 + MGP_AJ_P0092667 Stra6 protein_coding protein_coding MGP_AJ_T0092668.1 MGP_AJ_G0034865.1 mouse_genomes_project 9 55540650 55547679 + MGP_AJ_P0092668 Stra6 protein_coding protein_coding MGP_AJ_T0092669.1 MGP_AJ_G0034865.1 mouse_genomes_project 9 55541110 55547685 + MGP_AJ_P0092669 Stra6 protein_coding protein_coding MGP_AJ_T0092670.1 MGP_AJ_G0034865.1 mouse_genomes_project 9 55541240 55560774 + MGP_AJ_P0092670 Stra6 protein_coding protein_coding MGP_AJ_T0092671.1 MGP_AJ_G0034865.1 mouse_genomes_project 9 55541240 55547695 + MGP_AJ_P0092671 Stra6 protein_coding protein_coding MGP_AJ_T0002451.1 MGP_AJ_G0002360.1 mouse_genomes_project 9 103031832 103033241 + TEC TEC MGP_AJ_T0094903.1 MGP_AJ_G0035321.1 mouse_genomes_project 9 107982196 108137756 + MGP_AJ_P0094903 Map4 protein_coding protein_coding MGP_AJ_T0094904.1 MGP_AJ_G0035321.1 mouse_genomes_project 9 107982536 108058209 + MGP_AJ_P0094904 Map4 protein_coding protein_coding MGP_AJ_T0094905.1 MGP_AJ_G0035321.1 mouse_genomes_project 9 107982600 108137748 + MGP_AJ_P0094905 Map4 protein_coding protein_coding MGP_AJ_T0094906.1 MGP_AJ_G0035321.1 mouse_genomes_project 9 108021012 108055751 + Map4 protein_coding processed_transcript MGP_AJ_T0094907.1 MGP_AJ_G0035321.1 mouse_genomes_project 9 108078520 108080642 + Map4 protein_coding processed_transcript MGP_AJ_T0094908.1 MGP_AJ_G0035321.1 mouse_genomes_project 9 108089944 108126521 + MGP_AJ_P0094908 Map4 protein_coding protein_coding MGP_AJ_T0094909.1 MGP_AJ_G0035321.1 mouse_genomes_project 9 108106083 108137747 + MGP_AJ_P0094909 Map4 protein_coding protein_coding MGP_AJ_T0094910.1 MGP_AJ_G0035321.1 mouse_genomes_project 9 108106087 108136974 + MGP_AJ_P0094910 Map4 protein_coding protein_coding MGP_AJ_T0094911.1 MGP_AJ_G0035321.1 mouse_genomes_project 9 108106105 108137754 + MGP_AJ_P0094911 Map4 protein_coding protein_coding MGP_AJ_T0094912.1 MGP_AJ_G0035321.1 mouse_genomes_project 9 108116414 108122568 + Map4 protein_coding processed_transcript MGP_AJ_T0094913.1 MGP_AJ_G0035321.1 mouse_genomes_project 9 108121399 108136298 + MGP_AJ_P0094913 Map4 protein_coding protein_coding MGP_AJ_T0094914.1 MGP_AJ_G0035321.1 mouse_genomes_project 9 108121399 108135888 + MGP_AJ_P0094914 Map4 protein_coding protein_coding MGP_AJ_T0094915.1 MGP_AJ_G0035321.1 mouse_genomes_project 9 108122639 108135596 + MGP_AJ_P0094915 Map4 protein_coding protein_coding MGP_AJ_T0094916.1 MGP_AJ_G0035321.1 mouse_genomes_project 9 108122663 108135715 + MGP_AJ_P0094916 Map4 protein_coding protein_coding MGP_AJ_T0094917.1 MGP_AJ_G0035321.1 mouse_genomes_project 9 108131401 108133836 + Map4 protein_coding retained_intron MGP_AJ_T0094918.1 MGP_AJ_G0035321.1 mouse_genomes_project 9 108131850 108135951 + MGP_AJ_P0094918 Map4 protein_coding protein_coding MGP_AJ_T0094919.1 MGP_AJ_G0035321.1 mouse_genomes_project 9 108133600 108136298 + MGP_AJ_P0094919 Map4 protein_coding protein_coding MGP_AJ_T0092431.1 MGP_AJ_G0034787.1 mouse_genomes_project 9 50061174 50067558 - MGP_AJ_P0092431 AI593442 protein_coding protein_coding MGP_AJ_T0002470.1 MGP_AJ_G0002379.1 mouse_genomes_project 9 108957155 108959958 - TEC TEC MGP_AJ_T0009301.1 MGP_AJ_G0007473.1 mouse_genomes_project 9 89141633 89145383 + Gm28652 lincRNA lincRNA MGP_AJ_T0095065.1 MGP_AJ_G0035348.1 mouse_genomes_project 9 109051280 109056564 - MGP_AJ_P0095065 Rtp3 protein_coding protein_coding MGP_AJ_T0095066.1 MGP_AJ_G0035348.1 mouse_genomes_project 9 109053389 109057434 - MGP_AJ_P0095066 Rtp3 protein_coding protein_coding MGP_AJ_T0091834.1 MGP_AJ_G0034539.1 mouse_genomes_project 9 34267815 34295154 - MGP_AJ_P0091834 Slc37a2 protein_coding protein_coding MGP_AJ_T0091835.1 MGP_AJ_G0034539.1 mouse_genomes_project 9 34268982 34294830 - MGP_AJ_P0091835 Slc37a2 protein_coding protein_coding MGP_AJ_T0091836.1 MGP_AJ_G0034539.1 mouse_genomes_project 9 34269178 34273821 - Slc37a2 protein_coding retained_intron MGP_AJ_T0005519.1 MGP_AJ_G0004659.1 mouse_genomes_project 9 104042938 104053877 + D030055H07Rik antisense antisense MGP_AJ_T0005520.1 MGP_AJ_G0004659.1 mouse_genomes_project 9 104049118 104053923 + D030055H07Rik antisense antisense MGP_AJ_T0005521.1 MGP_AJ_G0004659.1 mouse_genomes_project 9 104050506 104054373 + D030055H07Rik antisense antisense MGP_AJ_T0101553.1 MGP_AJ_G0039519.1 mouse_genomes_project 9 38042899 38042985 + Snord14c snoRNA snoRNA MGP_AJ_T0091787.1 MGP_AJ_G0034532.1 mouse_genomes_project 9 33709342 33715006 + MGP_AJ_P0091787 Acrv1 protein_coding protein_coding MGP_AJ_T0091788.1 MGP_AJ_G0034532.1 mouse_genomes_project 9 33709376 33713528 + Acrv1 protein_coding retained_intron MGP_AJ_T0016098.1 MGP_AJ_G0014193.1 mouse_genomes_project 9 74463726 74464624 - processed_pseudogene processed_pseudogene MGP_AJ_T0002428.1 MGP_AJ_G0002337.1 mouse_genomes_project 9 98551327 98552379 + TEC TEC MGP_AJ_T0093249.1 MGP_AJ_G0035003.1 mouse_genomes_project 9 70623952 70629600 - MGP_AJ_P0093249 Ccpg1os protein_coding protein_coding MGP_AJ_T0093250.1 MGP_AJ_G0035003.1 mouse_genomes_project 9 70627692 70629606 - Ccpg1os protein_coding retained_intron MGP_AJ_T0092835.1 MGP_AJ_G0034906.1 mouse_genomes_project 9 60381415 60483359 - MGP_AJ_P0092835 Pias1 protein_coding protein_coding MGP_AJ_T0093156.1 MGP_AJ_G0034991.1 mouse_genomes_project 9 69112113 69204146 - Myzap protein_coding retained_intron MGP_AJ_T0093157.1 MGP_AJ_G0034991.1 mouse_genomes_project 9 69112113 69204146 - MGP_AJ_P0093157 Myzap protein_coding protein_coding MGP_AJ_T0093158.1 MGP_AJ_G0034991.1 mouse_genomes_project 9 69112825 69204051 - MGP_AJ_P0093158 Myzap protein_coding protein_coding MGP_AJ_T0093159.1 MGP_AJ_G0034991.1 mouse_genomes_project 9 69172636 69191713 - MGP_AJ_P0093159 Myzap protein_coding protein_coding MGP_AJ_T0093160.1 MGP_AJ_G0034991.1 mouse_genomes_project 9 69176226 69204128 - MGP_AJ_P0093160 Myzap protein_coding protein_coding MGP_AJ_T0095280.1 MGP_AJ_G0035399.1 mouse_genomes_project 9 117577289 117613904 + MGP_AJ_P0095280 Xylb protein_coding protein_coding MGP_AJ_T0091474.1 MGP_AJ_G0034422.1 mouse_genomes_project 9 18115510 18125113 - MGP_AJ_P0091474 Keap1 protein_coding protein_coding MGP_AJ_T0091475.1 MGP_AJ_G0034422.1 mouse_genomes_project 9 18115511 18124852 - MGP_AJ_P0091475 Keap1 protein_coding protein_coding MGP_AJ_T0091476.1 MGP_AJ_G0034422.1 mouse_genomes_project 9 18115847 18124594 - MGP_AJ_P0091476 Keap1 protein_coding protein_coding MGP_AJ_T0091477.1 MGP_AJ_G0034422.1 mouse_genomes_project 9 18116413 18124860 - MGP_AJ_P0091477 Keap1 protein_coding protein_coding MGP_AJ_T0091478.1 MGP_AJ_G0034422.1 mouse_genomes_project 9 18121903 18122974 - Keap1 protein_coding processed_transcript MGP_AJ_T0009229.1 MGP_AJ_G0007416.1 mouse_genomes_project 9 32461354 32463308 - lincRNA lincRNA MGP_AJ_T0002381.1 MGP_AJ_G0002291.1 mouse_genomes_project 9 70537879 70539318 + TEC TEC MGP_AJ_T0000342.1 MGP_AJ_G0000286.1 mouse_genomes_project 9 121301485 121301556 + mt-Tn Mt_tRNA Mt_tRNA MGP_AJ_T0009281.1 MGP_AJ_G0007457.1 mouse_genomes_project 9 75077266 75109254 - 5730403I07Rik lincRNA lincRNA MGP_AJ_T0002465.1 MGP_AJ_G0002374.1 mouse_genomes_project 9 108058443 108059383 + TEC TEC MGP_AJ_T0095040.1 MGP_AJ_G0035340.1 mouse_genomes_project 9 108898309 108905022 + MGP_AJ_P0095040 Prss45 protein_coding protein_coding MGP_AJ_T0095041.1 MGP_AJ_G0035340.1 mouse_genomes_project 9 108898309 108905019 + MGP_AJ_P0095041 Prss45 protein_coding protein_coding MGP_AJ_T0092715.1 MGP_AJ_G0034876.1 mouse_genomes_project 9 56243473 56280997 + MGP_AJ_P0092715 Hcn4 protein_coding protein_coding MGP_AJ_T0005488.1 MGP_AJ_G0004637.1 mouse_genomes_project 9 81182118 81205117 + Gm2087 antisense antisense MGP_AJ_T0009250.1 MGP_AJ_G0007432.1 mouse_genomes_project 9 54431833 54432631 - 2700012I20Rik lincRNA lincRNA MGP_AJ_T0100300.1 MGP_AJ_G0038266.1 mouse_genomes_project 9 92071101 92071258 + Gm24200 snRNA snRNA MGP_AJ_T0018537.1 MGP_AJ_G0015718.1 mouse_genomes_project 9 61553310 61556301 - 1700055C04Rik processed_transcript processed_transcript MGP_AJ_T0009287.1 MGP_AJ_G0007463.1 mouse_genomes_project 9 79996925 80000215 + 1700063H06Rik lincRNA lincRNA MGP_AJ_T0091139.1 MGP_AJ_G0034282.1 mouse_genomes_project 9 175997 231307 + MGP_AJ_P0091139 Alkbh8 protein_coding protein_coding MGP_AJ_T0091140.1 MGP_AJ_G0034282.1 mouse_genomes_project 9 176025 229856 + MGP_AJ_P0091140 Alkbh8 protein_coding unknown_likely_coding MGP_AJ_T0091141.1 MGP_AJ_G0034282.1 mouse_genomes_project 9 179127 230099 + MGP_AJ_P0091141 Alkbh8 protein_coding protein_coding MGP_AJ_T0005541.1 MGP_AJ_G0004674.1 mouse_genomes_project 9 105902177 105906472 - 4930535L15Rik antisense antisense MGP_AJ_T0016139.1 MGP_AJ_G0014234.1 mouse_genomes_project 9 92195400 92195974 - processed_pseudogene processed_pseudogene MGP_AJ_T0095294.1 MGP_AJ_G0035406.1 mouse_genomes_project 9 118114427 118288047 - MGP_AJ_P0095294 Cx3cr1 protein_coding protein_coding MGP_AJ_T0095302.1 MGP_AJ_G0035406.1 mouse_genomes_project 9 118269269 118288046 - MGP_AJ_P0095302 Cx3cr1 protein_coding protein_coding MGP_AJ_T0095393.1 MGP_AJ_G0035437.1 mouse_genomes_project 9 120161766 120189885 + MGP_AJ_P0095393 Fam198a protein_coding protein_coding MGP_AJ_T0011052.1 MGP_AJ_G0009174.1 mouse_genomes_project 9 38786874 38786970 + Mirlet7a-2 miRNA miRNA MGP_AJ_T0091798.1 MGP_AJ_G0034534.1 mouse_genomes_project 9 33750387 33772956 - MGP_AJ_P0091798 Stt3a protein_coding protein_coding MGP_AJ_T0091799.1 MGP_AJ_G0034534.1 mouse_genomes_project 9 33750886 33785343 - MGP_AJ_P0091799 Stt3a protein_coding protein_coding MGP_AJ_T0091800.1 MGP_AJ_G0034534.1 mouse_genomes_project 9 33770422 33785308 - MGP_AJ_P0091800 Stt3a protein_coding nonsense_mediated_decay MGP_AJ_T0091801.1 MGP_AJ_G0034534.1 mouse_genomes_project 9 33776584 33777588 - Stt3a protein_coding retained_intron MGP_AJ_T0091802.1 MGP_AJ_G0034534.1 mouse_genomes_project 9 33777007 33785039 - MGP_AJ_P0091802 Stt3a protein_coding protein_coding MGP_AJ_T0091803.1 MGP_AJ_G0034534.1 mouse_genomes_project 9 33780331 33785262 - Stt3a protein_coding retained_intron MGP_AJ_T0091804.1 MGP_AJ_G0034534.1 mouse_genomes_project 9 33780551 33785305 - Stt3a protein_coding retained_intron MGP_AJ_T0091362.1 MGP_AJ_G0034364.1 mouse_genomes_project 9 15897423 15898362 + MGP_AJ_P0091362 Olfr834 protein_coding protein_coding MGP_AJ_T0091489.1 MGP_AJ_G0034427.1 mouse_genomes_project 9 18182781 18199936 - MGP_AJ_P0091489 Ap1m2 protein_coding protein_coding MGP_AJ_T0091490.1 MGP_AJ_G0034427.1 mouse_genomes_project 9 18182781 18199936 - MGP_AJ_P0091490 Ap1m2 protein_coding protein_coding MGP_AJ_T0093843.1 MGP_AJ_G0035134.1 mouse_genomes_project 9 96086547 96196439 + MGP_AJ_P0093843 Nmnat3 protein_coding protein_coding MGP_AJ_T0093844.1 MGP_AJ_G0035134.1 mouse_genomes_project 9 96086567 96164637 + Nmnat3 protein_coding processed_transcript MGP_AJ_T0093845.1 MGP_AJ_G0035134.1 mouse_genomes_project 9 96095717 96152241 + Nmnat3 protein_coding retained_intron MGP_AJ_T0093846.1 MGP_AJ_G0035134.1 mouse_genomes_project 9 96095717 96218098 + MGP_AJ_P0093846 Nmnat3 protein_coding protein_coding MGP_AJ_T0093848.1 MGP_AJ_G0035134.1 mouse_genomes_project 9 96150539 96208330 + MGP_AJ_P0093848 Nmnat3 protein_coding protein_coding MGP_AJ_T0005559.1 MGP_AJ_G0004689.1 mouse_genomes_project 9 119791177 119808132 + Lyzl4os antisense antisense MGP_AJ_T0005560.1 MGP_AJ_G0004689.1 mouse_genomes_project 9 119791200 119819573 + Lyzl4os antisense antisense MGP_AJ_T0092465.1 MGP_AJ_G0034801.1 mouse_genomes_project 9 51381246 51421342 - MGP_AJ_P0092465 Tnfaip8l3 protein_coding protein_coding MGP_AJ_T0011072.1 MGP_AJ_G0009194.1 mouse_genomes_project 9 62498265 62498390 - Gm25640 miRNA miRNA MGP_AJ_T0101551.1 MGP_AJ_G0039517.1 mouse_genomes_project 9 35623503 35623627 + Gm23271 snoRNA snoRNA MGP_AJ_T0011091.1 MGP_AJ_G0009213.1 mouse_genomes_project 9 105124409 105124497 - Gm22238 miRNA miRNA MGP_AJ_T0091948.1 MGP_AJ_G0034620.1 mouse_genomes_project 9 36814626 36815693 + MGP_AJ_P0091948 Olfr960 protein_coding protein_coding MGP_AJ_T0018559.1 MGP_AJ_G0015728.1 mouse_genomes_project 9 86284929 86286541 - Snhg5 processed_transcript lincRNA MGP_AJ_T0018560.1 MGP_AJ_G0015728.1 mouse_genomes_project 9 86284931 86286502 - Snhg5 processed_transcript lincRNA MGP_AJ_T0018561.1 MGP_AJ_G0015728.1 mouse_genomes_project 9 86284936 86285577 - Snhg5 processed_transcript lincRNA MGP_AJ_T0094153.1 MGP_AJ_G0035198.1 mouse_genomes_project 9 103732278 103844206 - MGP_AJ_P0094153 Col6a5 protein_coding protein_coding MGP_AJ_T0094154.1 MGP_AJ_G0035198.1 mouse_genomes_project 9 103734816 103844206 - MGP_AJ_P0094154 Col6a5 protein_coding protein_coding MGP_AJ_T0094155.1 MGP_AJ_G0035198.1 mouse_genomes_project 9 103756431 103762526 - Col6a5 protein_coding retained_intron MGP_AJ_T0094306.1 MGP_AJ_G0035228.1 mouse_genomes_project 9 105191644 105197580 + MGP_AJ_P0094306 Cish protein_coding protein_coding MGP_AJ_T0094307.1 MGP_AJ_G0035228.1 mouse_genomes_project 9 105192330 105198378 + MGP_AJ_P0094307 Cish protein_coding protein_coding MGP_AJ_T0094308.1 MGP_AJ_G0035228.1 mouse_genomes_project 9 105192527 105197536 + Cish protein_coding processed_transcript MGP_AJ_T0094309.1 MGP_AJ_G0035228.1 mouse_genomes_project 9 105192532 105196144 + MGP_AJ_P0094309 Cish protein_coding protein_coding MGP_AJ_T0094310.1 MGP_AJ_G0035228.1 mouse_genomes_project 9 105194748 105196051 + Cish protein_coding processed_transcript MGP_AJ_T0009235.1 MGP_AJ_G0007420.1 mouse_genomes_project 9 37734364 37736841 + Gm17540 lincRNA lincRNA MGP_AJ_T0005542.1 MGP_AJ_G0004675.1 mouse_genomes_project 9 105915243 105920421 - Gm38134 antisense antisense MGP_AJ_T0094845.1 MGP_AJ_G0035304.1 mouse_genomes_project 9 106947683 106955486 - MGP_AJ_P0094845 Tma7 protein_coding protein_coding MGP_AJ_T0094846.1 MGP_AJ_G0035304.1 mouse_genomes_project 9 106951006 106955695 - MGP_AJ_P0094846 Tma7 protein_coding protein_coding MGP_AJ_T0094847.1 MGP_AJ_G0035304.1 mouse_genomes_project 9 106951307 106955486 - Tma7 protein_coding processed_transcript MGP_AJ_T0094848.1 MGP_AJ_G0035304.1 mouse_genomes_project 9 106955171 106955473 - Tma7 protein_coding retained_intron MGP_AJ_T0091950.1 MGP_AJ_G0034622.1 mouse_genomes_project 9 36868162 36869098 + MGP_AJ_P0091950 Olfr963 protein_coding protein_coding MGP_AJ_T0095464.1 MGP_AJ_G0035463.1 mouse_genomes_project 9 121903052 121928200 - Lztfl1 protein_coding processed_transcript MGP_AJ_T0095465.1 MGP_AJ_G0035463.1 mouse_genomes_project 9 121905648 121928200 - MGP_AJ_P0095465 Lztfl1 protein_coding protein_coding MGP_AJ_T0095466.1 MGP_AJ_G0035463.1 mouse_genomes_project 9 121916809 121918818 - Lztfl1 protein_coding retained_intron MGP_AJ_T0095467.1 MGP_AJ_G0035463.1 mouse_genomes_project 9 121918557 121928128 - Lztfl1 protein_coding processed_transcript MGP_AJ_T0095468.1 MGP_AJ_G0035463.1 mouse_genomes_project 9 121923053 121928122 - Lztfl1 protein_coding processed_transcript MGP_AJ_T0095469.1 MGP_AJ_G0035463.1 mouse_genomes_project 9 121923057 121928124 - Lztfl1 protein_coding processed_transcript MGP_AJ_T0095470.1 MGP_AJ_G0035463.1 mouse_genomes_project 9 121925460 121928157 - Lztfl1 protein_coding retained_intron MGP_AJ_T0091628.1 MGP_AJ_G0034481.1 mouse_genomes_project 9 23892030 23909167 - Acad8 protein_coding retained_intron MGP_AJ_T0091629.1 MGP_AJ_G0034481.1 mouse_genomes_project 9 23892030 23917792 - MGP_AJ_P0091629 Acad8 protein_coding protein_coding MGP_AJ_T0091630.1 MGP_AJ_G0034481.1 mouse_genomes_project 9 23892039 23917775 - MGP_AJ_P0091630 Acad8 protein_coding protein_coding MGP_AJ_T0091631.1 MGP_AJ_G0034481.1 mouse_genomes_project 9 23893271 23895851 - Acad8 protein_coding retained_intron MGP_AJ_T0091632.1 MGP_AJ_G0034481.1 mouse_genomes_project 9 23897094 23917734 - MGP_AJ_P0091632 Acad8 protein_coding nonsense_mediated_decay MGP_AJ_T0091633.1 MGP_AJ_G0034481.1 mouse_genomes_project 9 23897155 23917732 - MGP_AJ_P0091633 Acad8 protein_coding nonsense_mediated_decay MGP_AJ_T0091634.1 MGP_AJ_G0034481.1 mouse_genomes_project 9 23909136 23917731 - Acad8 protein_coding retained_intron MGP_AJ_T0095339.1 MGP_AJ_G0035421.1 mouse_genomes_project 9 119184836 119329992 - Ulk4 protein_coding processed_transcript MGP_AJ_T0095340.1 MGP_AJ_G0035421.1 mouse_genomes_project 9 119189022 119264482 - Ulk4 protein_coding retained_intron MGP_AJ_T0095341.1 MGP_AJ_G0035421.1 mouse_genomes_project 9 119189022 119480028 - MGP_AJ_P0095341 Ulk4 protein_coding protein_coding MGP_AJ_T0095342.1 MGP_AJ_G0035421.1 mouse_genomes_project 9 119190972 119480001 - MGP_AJ_P0095342 Ulk4 protein_coding nonsense_mediated_decay MGP_AJ_T0095343.1 MGP_AJ_G0035421.1 mouse_genomes_project 9 119293962 119480012 - MGP_AJ_P0095343 Ulk4 protein_coding nonsense_mediated_decay MGP_AJ_T0095344.1 MGP_AJ_G0035421.1 mouse_genomes_project 9 119293966 119480003 - MGP_AJ_P0095344 Ulk4 protein_coding protein_coding MGP_AJ_T0095345.1 MGP_AJ_G0035421.1 mouse_genomes_project 9 119322100 119480028 - Ulk4 protein_coding retained_intron MGP_AJ_T0095346.1 MGP_AJ_G0035421.1 mouse_genomes_project 9 119380982 119462182 - MGP_AJ_P0095346 Ulk4 protein_coding nonsense_mediated_decay MGP_AJ_T0095347.1 MGP_AJ_G0035421.1 mouse_genomes_project 9 119384465 119411952 - Ulk4 protein_coding processed_transcript MGP_AJ_T0011099.1 MGP_AJ_G0009221.1 mouse_genomes_project 9 107939345 107939413 + Mir7089 miRNA miRNA MGP_AJ_T0101602.1 MGP_AJ_G0039568.1 mouse_genomes_project 9 118346723 118346926 + Gm26448 snoRNA snoRNA MGP_AJ_T0093876.1 MGP_AJ_G0035148.1 mouse_genomes_project 9 97054559 97075070 + MGP_AJ_P0093876 Cep70 protein_coding protein_coding MGP_AJ_T0093877.1 MGP_AJ_G0035148.1 mouse_genomes_project 9 97054634 97105376 + MGP_AJ_P0093877 Cep70 protein_coding protein_coding MGP_AJ_T0093878.1 MGP_AJ_G0035148.1 mouse_genomes_project 9 97054645 97065767 + Cep70 protein_coding retained_intron MGP_AJ_T0093879.1 MGP_AJ_G0035148.1 mouse_genomes_project 9 97054653 97076236 + MGP_AJ_P0093879 Cep70 protein_coding protein_coding MGP_AJ_T0093880.1 MGP_AJ_G0035148.1 mouse_genomes_project 9 97054655 97102957 + MGP_AJ_P0093880 Cep70 protein_coding protein_coding MGP_AJ_T0093881.1 MGP_AJ_G0035148.1 mouse_genomes_project 9 97054674 97073929 + MGP_AJ_P0093881 Cep70 protein_coding protein_coding MGP_AJ_T0093882.1 MGP_AJ_G0035148.1 mouse_genomes_project 9 97054718 97082939 + MGP_AJ_P0093882 Cep70 protein_coding nonsense_mediated_decay MGP_AJ_T0093883.1 MGP_AJ_G0035148.1 mouse_genomes_project 9 97057477 97074374 + Cep70 protein_coding retained_intron MGP_AJ_T0093884.1 MGP_AJ_G0035148.1 mouse_genomes_project 9 97096389 97101323 + Cep70 protein_coding retained_intron MGP_AJ_T0091391.1 MGP_AJ_G0034393.1 mouse_genomes_project 9 17179196 17180258 + MGP_AJ_P0091391 Olfr873 protein_coding protein_coding MGP_AJ_T0100295.1 MGP_AJ_G0038261.1 mouse_genomes_project 9 84487161 84487275 - Gm25949 snRNA snRNA MGP_AJ_T0099108.1 MGP_AJ_G0037079.1 mouse_genomes_project 9 38837638 38837948 + Gm28119 sense_intronic sense_intronic MGP_AJ_T0002382.1 MGP_AJ_G0002292.1 mouse_genomes_project 9 70617619 70618893 - TEC TEC MGP_AJ_T0016171.1 MGP_AJ_G0014266.1 mouse_genomes_project 9 104941878 104943081 + processed_pseudogene processed_pseudogene MGP_AJ_T0016116.1 MGP_AJ_G0014211.1 mouse_genomes_project 9 82868797 82869242 + processed_pseudogene processed_pseudogene MGP_AJ_T0092539.1 MGP_AJ_G0034824.1 mouse_genomes_project 9 52881623 52885522 + MGP_AJ_P0092539 Isl2 protein_coding protein_coding MGP_AJ_T0092540.1 MGP_AJ_G0034824.1 mouse_genomes_project 9 52884099 52889135 + MGP_AJ_P0092540 Isl2 protein_coding protein_coding MGP_AJ_T0092541.1 MGP_AJ_G0034824.1 mouse_genomes_project 9 52884158 52889135 + MGP_AJ_P0092541 Isl2 protein_coding nonsense_mediated_decay MGP_AJ_T0092542.1 MGP_AJ_G0034824.1 mouse_genomes_project 9 52884158 52889133 + MGP_AJ_P0092542 Isl2 protein_coding nonsense_mediated_decay MGP_AJ_T0092543.1 MGP_AJ_G0034824.1 mouse_genomes_project 9 52885287 52887232 + Isl2 protein_coding retained_intron MGP_AJ_T0092886.1 MGP_AJ_G0034921.1 mouse_genomes_project 9 61828735 61865453 - MGP_AJ_P0092886 Dis3l protein_coding protein_coding MGP_AJ_T0092887.1 MGP_AJ_G0034921.1 mouse_genomes_project 9 61828736 61865484 - MGP_AJ_P0092887 Dis3l protein_coding protein_coding MGP_AJ_T0092888.1 MGP_AJ_G0034921.1 mouse_genomes_project 9 61829004 61865363 - MGP_AJ_P0092888 Dis3l protein_coding protein_coding MGP_AJ_T0092889.1 MGP_AJ_G0034921.1 mouse_genomes_project 9 61829004 61864667 - MGP_AJ_P0092889 Dis3l protein_coding protein_coding MGP_AJ_T0092890.1 MGP_AJ_G0034921.1 mouse_genomes_project 9 61845860 61865366 - Dis3l protein_coding retained_intron MGP_AJ_T0092891.1 MGP_AJ_G0034921.1 mouse_genomes_project 9 61851282 61860785 - MGP_AJ_P0092891 Dis3l protein_coding protein_coding MGP_AJ_T0092892.1 MGP_AJ_G0034921.1 mouse_genomes_project 9 61860820 61864973 - Dis3l protein_coding processed_transcript MGP_AJ_T0092893.1 MGP_AJ_G0034921.1 mouse_genomes_project 9 61863647 61865453 - Dis3l protein_coding retained_intron MGP_AJ_T0092118.1 MGP_AJ_G0034692.1 mouse_genomes_project 9 41744340 41746392 - MGP_AJ_P0092118 Upk2 protein_coding protein_coding MGP_AJ_T0092001.1 MGP_AJ_G0034652.1 mouse_genomes_project 9 38135566 38200521 - MGP_AJ_P0092001 Jhy protein_coding protein_coding MGP_AJ_T0092002.1 MGP_AJ_G0034652.1 mouse_genomes_project 9 38135568 38138338 - Jhy protein_coding retained_intron MGP_AJ_T0092003.1 MGP_AJ_G0034652.1 mouse_genomes_project 9 38197307 38198747 - MGP_AJ_P0092003 Jhy protein_coding protein_coding MGP_AJ_T0009214.1 MGP_AJ_G0007401.1 mouse_genomes_project 9 17472901 17477640 - Gm26521 lincRNA lincRNA MGP_AJ_T0093956.1 MGP_AJ_G0035163.1 mouse_genomes_project 9 98952748 99094838 - MGP_AJ_P0093956 Ppp2r3a protein_coding protein_coding MGP_AJ_T0093957.1 MGP_AJ_G0035163.1 mouse_genomes_project 9 98952950 99041274 - MGP_AJ_P0093957 Ppp2r3a protein_coding protein_coding MGP_AJ_T0093958.1 MGP_AJ_G0035163.1 mouse_genomes_project 9 98955547 98973328 - Ppp2r3a protein_coding processed_transcript MGP_AJ_T0093959.1 MGP_AJ_G0035163.1 mouse_genomes_project 9 98972447 99041052 - Ppp2r3a protein_coding retained_intron MGP_AJ_T0093960.1 MGP_AJ_G0035163.1 mouse_genomes_project 9 99032070 99041206 - Ppp2r3a protein_coding retained_intron MGP_AJ_T0093961.1 MGP_AJ_G0035163.1 mouse_genomes_project 9 99039667 99042745 - Ppp2r3a protein_coding retained_intron MGP_AJ_T0093962.1 MGP_AJ_G0035163.1 mouse_genomes_project 9 99048385 99054031 - Ppp2r3a protein_coding processed_transcript MGP_AJ_T0094432.1 MGP_AJ_G0035247.1 mouse_genomes_project 9 105580426 105609372 - MGP_AJ_P0094432 Sema3f protein_coding protein_coding MGP_AJ_T0094433.1 MGP_AJ_G0035247.1 mouse_genomes_project 9 105581345 105604454 - MGP_AJ_P0094433 Sema3f protein_coding protein_coding MGP_AJ_T0094434.1 MGP_AJ_G0035247.1 mouse_genomes_project 9 105582049 105583690 - Sema3f protein_coding retained_intron MGP_AJ_T0094435.1 MGP_AJ_G0035247.1 mouse_genomes_project 9 105582049 105608916 - MGP_AJ_P0094435 Sema3f protein_coding nonsense_mediated_decay MGP_AJ_T0094436.1 MGP_AJ_G0035247.1 mouse_genomes_project 9 105582919 105586288 - MGP_AJ_P0094436 Sema3f protein_coding nonsense_mediated_decay MGP_AJ_T0094437.1 MGP_AJ_G0035247.1 mouse_genomes_project 9 105582935 105583726 - Sema3f protein_coding retained_intron MGP_AJ_T0094438.1 MGP_AJ_G0035247.1 mouse_genomes_project 9 105583058 105583700 - Sema3f protein_coding retained_intron MGP_AJ_T0094439.1 MGP_AJ_G0035247.1 mouse_genomes_project 9 105586245 105591685 - Sema3f protein_coding processed_transcript MGP_AJ_T0094440.1 MGP_AJ_G0035247.1 mouse_genomes_project 9 105586712 105591613 - MGP_AJ_P0094440 Sema3f protein_coding protein_coding MGP_AJ_T0094441.1 MGP_AJ_G0035247.1 mouse_genomes_project 9 105586726 105588890 - Sema3f protein_coding retained_intron MGP_AJ_T0094442.1 MGP_AJ_G0035247.1 mouse_genomes_project 9 105587296 105608377 - MGP_AJ_P0094442 Sema3f protein_coding protein_coding MGP_AJ_T0094443.1 MGP_AJ_G0035247.1 mouse_genomes_project 9 105588658 105591674 - MGP_AJ_P0094443 Sema3f protein_coding protein_coding MGP_AJ_T0091970.1 MGP_AJ_G0034642.1 mouse_genomes_project 9 37324607 37325723 - MGP_AJ_P0091970 Olfr985 protein_coding protein_coding MGP_AJ_T0005515.1 MGP_AJ_G0004655.1 mouse_genomes_project 9 101402626 101411418 + 4932413F04Rik antisense antisense MGP_AJ_T0094084.1 MGP_AJ_G0035188.1 mouse_genomes_project 9 102139770 102189102 - MGP_AJ_P0094084 Acpp protein_coding protein_coding MGP_AJ_T0094085.1 MGP_AJ_G0035188.1 mouse_genomes_project 9 102142503 102152680 - Acpp protein_coding processed_transcript MGP_AJ_T0094086.1 MGP_AJ_G0035188.1 mouse_genomes_project 9 102150454 102189081 - MGP_AJ_P0094086 Acpp protein_coding protein_coding MGP_AJ_T0094087.1 MGP_AJ_G0035188.1 mouse_genomes_project 9 102158128 102189056 - Acpp protein_coding retained_intron MGP_AJ_T0094088.1 MGP_AJ_G0035188.1 mouse_genomes_project 9 102170500 102189081 - Acpp protein_coding retained_intron MGP_AJ_T0009291.1 MGP_AJ_G0007465.1 mouse_genomes_project 9 81455108 81456850 + Gm2109 lincRNA lincRNA MGP_AJ_T0093580.1 MGP_AJ_G0035079.1 mouse_genomes_project 9 84366204 84484083 - MGP_AJ_P0093580 Me1 protein_coding protein_coding MGP_AJ_T0093581.1 MGP_AJ_G0035079.1 mouse_genomes_project 9 84366239 84475543 - MGP_AJ_P0093581 Me1 protein_coding protein_coding MGP_AJ_T0093582.1 MGP_AJ_G0035079.1 mouse_genomes_project 9 84367602 84407329 - Me1 protein_coding processed_transcript MGP_AJ_T0093583.1 MGP_AJ_G0035079.1 mouse_genomes_project 9 84402145 84407362 - Me1 protein_coding processed_transcript MGP_AJ_T0011061.1 MGP_AJ_G0009183.1 mouse_genomes_project 9 48498536 48498613 - Mir34c miRNA miRNA MGP_AJ_T0016126.1 MGP_AJ_G0014221.1 mouse_genomes_project 9 87820947 87821594 + processed_pseudogene processed_pseudogene MGP_AJ_T0002403.1 MGP_AJ_G0002312.1 mouse_genomes_project 9 85490398 85493198 + TEC TEC MGP_AJ_T0009237.1 MGP_AJ_G0007422.1 mouse_genomes_project 9 40743545 40744441 + Gm28215 lincRNA lincRNA MGP_AJ_T0009284.1 MGP_AJ_G0007460.1 mouse_genomes_project 9 77913095 77916007 - Gm17477 lincRNA lincRNA MGP_AJ_T0094686.1 MGP_AJ_G0035282.1 mouse_genomes_project 9 106429499 106446424 + MGP_AJ_P0094686 Qrich1 protein_coding protein_coding MGP_AJ_T0094687.1 MGP_AJ_G0035282.1 mouse_genomes_project 9 106429780 106441403 + MGP_AJ_P0094687 Qrich1 protein_coding protein_coding MGP_AJ_T0094688.1 MGP_AJ_G0035282.1 mouse_genomes_project 9 106429796 106431299 + Qrich1 protein_coding processed_transcript MGP_AJ_T0094689.1 MGP_AJ_G0035282.1 mouse_genomes_project 9 106429796 106459020 + MGP_AJ_P0094689 Qrich1 protein_coding protein_coding MGP_AJ_T0094690.1 MGP_AJ_G0035282.1 mouse_genomes_project 9 106429803 106476052 + MGP_AJ_P0094690 Qrich1 protein_coding protein_coding MGP_AJ_T0094691.1 MGP_AJ_G0035282.1 mouse_genomes_project 9 106429807 106476223 + MGP_AJ_P0094691 Qrich1 protein_coding protein_coding MGP_AJ_T0094692.1 MGP_AJ_G0035282.1 mouse_genomes_project 9 106429845 106441389 + MGP_AJ_P0094692 Qrich1 protein_coding protein_coding MGP_AJ_T0094693.1 MGP_AJ_G0035282.1 mouse_genomes_project 9 106429848 106441429 + MGP_AJ_P0094693 Qrich1 protein_coding protein_coding MGP_AJ_T0094694.1 MGP_AJ_G0035282.1 mouse_genomes_project 9 106429849 106458789 + MGP_AJ_P0094694 Qrich1 protein_coding protein_coding MGP_AJ_T0094695.1 MGP_AJ_G0035282.1 mouse_genomes_project 9 106430107 106443157 + Qrich1 protein_coding retained_intron MGP_AJ_T0094696.1 MGP_AJ_G0035282.1 mouse_genomes_project 9 106430131 106441425 + MGP_AJ_P0094696 Qrich1 protein_coding protein_coding MGP_AJ_T0094697.1 MGP_AJ_G0035282.1 mouse_genomes_project 9 106440941 106446174 + MGP_AJ_P0094697 Qrich1 protein_coding protein_coding MGP_AJ_T0094698.1 MGP_AJ_G0035282.1 mouse_genomes_project 9 106470698 106475628 + Qrich1 protein_coding retained_intron MGP_AJ_T0094699.1 MGP_AJ_G0035282.1 mouse_genomes_project 9 106471036 106475459 + Qrich1 protein_coding retained_intron MGP_AJ_T0005430.1 MGP_AJ_G0004600.1 mouse_genomes_project 9 39735855 39768047 + Gm16322 antisense antisense MGP_AJ_T0005431.1 MGP_AJ_G0004600.1 mouse_genomes_project 9 39736874 39764796 + Gm16322 antisense antisense MGP_AJ_T0095044.1 MGP_AJ_G0035342.1 mouse_genomes_project 9 108922553 108929142 + MGP_AJ_P0095044 Prss50 protein_coding protein_coding MGP_AJ_T0095045.1 MGP_AJ_G0035342.1 mouse_genomes_project 9 108925872 108929141 + MGP_AJ_P0095045 Prss50 protein_coding protein_coding MGP_AJ_T0016075.1 MGP_AJ_G0014170.1 mouse_genomes_project 9 60949682 60950592 - processed_pseudogene processed_pseudogene MGP_AJ_T0100285.1 MGP_AJ_G0038251.1 mouse_genomes_project 9 68169234 68169342 + Gm22229 snRNA snRNA MGP_AJ_T0094468.1 MGP_AJ_G0035249.1 mouse_genomes_project 9 105674339 105776616 - MGP_AJ_P0094468 Rbm6 protein_coding protein_coding MGP_AJ_T0094469.1 MGP_AJ_G0035249.1 mouse_genomes_project 9 105674343 105776608 - MGP_AJ_P0094469 Rbm6 protein_coding protein_coding MGP_AJ_T0094470.1 MGP_AJ_G0035249.1 mouse_genomes_project 9 105674347 105776550 - MGP_AJ_P0094470 Rbm6 protein_coding nonsense_mediated_decay MGP_AJ_T0094471.1 MGP_AJ_G0035249.1 mouse_genomes_project 9 105678936 105681735 - Rbm6 protein_coding retained_intron MGP_AJ_T0094472.1 MGP_AJ_G0035249.1 mouse_genomes_project 9 105688926 105693200 - Rbm6 protein_coding retained_intron MGP_AJ_T0094473.1 MGP_AJ_G0035249.1 mouse_genomes_project 9 105689159 105693720 - MGP_AJ_P0094473 Rbm6 protein_coding protein_coding MGP_AJ_T0094474.1 MGP_AJ_G0035249.1 mouse_genomes_project 9 105693728 105776520 - MGP_AJ_P0094474 Rbm6 protein_coding protein_coding MGP_AJ_T0094475.1 MGP_AJ_G0035249.1 mouse_genomes_project 9 105702826 105776522 - Rbm6 protein_coding processed_transcript MGP_AJ_T0094476.1 MGP_AJ_G0035249.1 mouse_genomes_project 9 105714189 105749172 - Rbm6 protein_coding processed_transcript MGP_AJ_T0094477.1 MGP_AJ_G0035249.1 mouse_genomes_project 9 105733668 105776531 - Rbm6 protein_coding retained_intron MGP_AJ_T0094478.1 MGP_AJ_G0035249.1 mouse_genomes_project 9 105749057 105754331 - Rbm6 protein_coding retained_intron MGP_AJ_T0094479.1 MGP_AJ_G0035249.1 mouse_genomes_project 9 105756422 105776562 - MGP_AJ_P0094479 Rbm6 protein_coding protein_coding MGP_AJ_T0094480.1 MGP_AJ_G0035249.1 mouse_genomes_project 9 105756473 105776208 - MGP_AJ_P0094480 Rbm6 protein_coding protein_coding MGP_AJ_T0094481.1 MGP_AJ_G0035249.1 mouse_genomes_project 9 105756511 105776558 - Rbm6 protein_coding processed_transcript MGP_AJ_T0094482.1 MGP_AJ_G0035249.1 mouse_genomes_project 9 105761397 105776509 - Rbm6 protein_coding retained_intron MGP_AJ_T0094483.1 MGP_AJ_G0035249.1 mouse_genomes_project 9 105772626 105777024 - Rbm6 protein_coding retained_intron MGP_AJ_T0005463.1 MGP_AJ_G0004620.1 mouse_genomes_project 9 64357245 64361427 - BC050972 antisense antisense MGP_AJ_T0005464.1 MGP_AJ_G0004620.1 mouse_genomes_project 9 64357478 64361127 - BC050972 antisense antisense MGP_AJ_T0005465.1 MGP_AJ_G0004620.1 mouse_genomes_project 9 64357507 64362927 - BC050972 antisense antisense MGP_AJ_T0093866.1 MGP_AJ_G0035144.1 mouse_genomes_project 9 96791211 96807174 + MGP_AJ_P0093866 Faim protein_coding protein_coding MGP_AJ_T0093867.1 MGP_AJ_G0035144.1 mouse_genomes_project 9 96791225 96795488 + Faim protein_coding retained_intron MGP_AJ_T0093868.1 MGP_AJ_G0035144.1 mouse_genomes_project 9 96791231 96798063 + Faim protein_coding retained_intron MGP_AJ_T0093869.1 MGP_AJ_G0035144.1 mouse_genomes_project 9 96796655 96807158 + MGP_AJ_P0093869 Faim protein_coding protein_coding MGP_AJ_T0094318.1 MGP_AJ_G0035230.1 mouse_genomes_project 9 105236030 105244690 + MGP_AJ_P0094318 6430571L13Rik protein_coding protein_coding MGP_AJ_T0094319.1 MGP_AJ_G0035230.1 mouse_genomes_project 9 105243157 105247281 + 6430571L13Rik protein_coding processed_transcript MGP_AJ_T0091609.1 MGP_AJ_G0034475.1 mouse_genomes_project 9 22182692 22239217 + MGP_AJ_P0091609 Sept7 protein_coding protein_coding MGP_AJ_T0091610.1 MGP_AJ_G0034475.1 mouse_genomes_project 9 22182692 22239217 + MGP_AJ_P0091610 Sept7 protein_coding protein_coding MGP_AJ_T0091698.1 MGP_AJ_G0034502.1 mouse_genomes_project 9 29345141 29371873 + MGP_AJ_P0091698 Kcnj1 protein_coding protein_coding MGP_AJ_T0091699.1 MGP_AJ_G0034502.1 mouse_genomes_project 9 29366665 29371873 + MGP_AJ_P0091699 Kcnj1 protein_coding protein_coding MGP_AJ_T0091611.1 MGP_AJ_G0034476.1 mouse_genomes_project 9 22426376 22545999 + MGP_AJ_P0091611 Eepd1 protein_coding protein_coding MGP_AJ_T0091612.1 MGP_AJ_G0034476.1 mouse_genomes_project 9 22427692 22432139 + Eepd1 protein_coding processed_transcript MGP_AJ_T0091512.1 MGP_AJ_G0034432.1 mouse_genomes_project 9 18402483 18405290 - MGP_AJ_P0091512 Tmed1 protein_coding protein_coding MGP_AJ_T0100249.1 MGP_AJ_G0038215.1 mouse_genomes_project 9 6308300 6308362 + Gm22815 snRNA snRNA MGP_AJ_T0093341.1 MGP_AJ_G0035027.1 mouse_genomes_project 9 73689834 73813845 + MGP_AJ_P0093341 Hmgcll1 protein_coding protein_coding MGP_AJ_T0093342.1 MGP_AJ_G0035027.1 mouse_genomes_project 9 73689834 73813845 + MGP_AJ_P0093342 Hmgcll1 protein_coding protein_coding MGP_AJ_T0093343.1 MGP_AJ_G0035027.1 mouse_genomes_project 9 73689963 73811683 + MGP_AJ_P0093343 Hmgcll1 protein_coding protein_coding MGP_AJ_T0093344.1 MGP_AJ_G0035027.1 mouse_genomes_project 9 73689993 73751898 + Hmgcll1 protein_coding retained_intron MGP_AJ_T0093345.1 MGP_AJ_G0035027.1 mouse_genomes_project 9 73689994 73748597 + Hmgcll1 protein_coding retained_intron MGP_AJ_T0093346.1 MGP_AJ_G0035027.1 mouse_genomes_project 9 73689998 73732651 + Hmgcll1 protein_coding retained_intron MGP_AJ_T0093347.1 MGP_AJ_G0035027.1 mouse_genomes_project 9 73690034 73811594 + MGP_AJ_P0093347 Hmgcll1 protein_coding protein_coding MGP_AJ_T0092069.1 MGP_AJ_G0034673.1 mouse_genomes_project 9 41397003 41401207 - MGP_AJ_P0092069 protein_coding protein_coding MGP_AJ_T0093870.1 MGP_AJ_G0035145.1 mouse_genomes_project 9 96812273 96841131 - MGP_AJ_P0093870 Gm1123 protein_coding protein_coding MGP_AJ_T0091491.1 MGP_AJ_G0034428.1 mouse_genomes_project 9 18208436 18243886 + MGP_AJ_P0091491 Slc44a2 protein_coding unknown_likely_coding MGP_AJ_T0091492.1 MGP_AJ_G0034428.1 mouse_genomes_project 9 18226504 18243879 + MGP_AJ_P0091492 Slc44a2 protein_coding protein_coding MGP_AJ_T0091287.1 MGP_AJ_G0034334.1 mouse_genomes_project 9 11684104 11737220 + MGP_AJ_P0091287 Mre11a protein_coding protein_coding MGP_AJ_T0091288.1 MGP_AJ_G0034334.1 mouse_genomes_project 9 11684126 11739697 + MGP_AJ_P0091288 Mre11a protein_coding protein_coding MGP_AJ_T0091289.1 MGP_AJ_G0034334.1 mouse_genomes_project 9 11684152 11700954 + MGP_AJ_P0091289 Mre11a protein_coding protein_coding MGP_AJ_T0091290.1 MGP_AJ_G0034334.1 mouse_genomes_project 9 11697422 11714136 + MGP_AJ_P0091290 Mre11a protein_coding protein_coding MGP_AJ_T0091291.1 MGP_AJ_G0034334.1 mouse_genomes_project 9 11697435 11705165 + MGP_AJ_P0091291 Mre11a protein_coding protein_coding MGP_AJ_T0002434.1 MGP_AJ_G0002343.1 mouse_genomes_project 9 99026039 99027394 - TEC TEC MGP_AJ_T0092210.1 MGP_AJ_G0034721.1 mouse_genomes_project 9 43109027 43171938 - MGP_AJ_P0092210 Cep164 protein_coding protein_coding MGP_AJ_T0092211.1 MGP_AJ_G0034721.1 mouse_genomes_project 9 43109029 43171825 - MGP_AJ_P0092211 Cep164 protein_coding unknown_likely_coding MGP_AJ_T0092212.1 MGP_AJ_G0034721.1 mouse_genomes_project 9 43112825 43114609 - Cep164 protein_coding retained_intron MGP_AJ_T0092213.1 MGP_AJ_G0034721.1 mouse_genomes_project 9 43120451 43144695 - MGP_AJ_P0092213 Cep164 protein_coding protein_coding MGP_AJ_T0091411.1 MGP_AJ_G0034398.1 mouse_genomes_project 9 17357686 17384107 - MGP_AJ_P0091411 Zfp266 protein_coding protein_coding MGP_AJ_T0091412.1 MGP_AJ_G0034398.1 mouse_genomes_project 9 17361697 17384098 - MGP_AJ_P0091412 Zfp266 protein_coding protein_coding MGP_AJ_T0101597.1 MGP_AJ_G0039563.1 mouse_genomes_project 9 108175452 108175578 - Gm23377 snoRNA snoRNA MGP_AJ_T0093332.1 MGP_AJ_G0035022.1 mouse_genomes_project 9 73169647 73231558 - MGP_AJ_P0093332 Tmod3 protein_coding protein_coding MGP_AJ_T0092390.1 MGP_AJ_G0034774.1 mouse_genomes_project 9 48233311 48249688 + Ppp2r1b protein_coding processed_transcript MGP_AJ_T0092391.1 MGP_AJ_G0034774.1 mouse_genomes_project 9 48244888 48282304 + MGP_AJ_P0092391 Ppp2r1b protein_coding protein_coding MGP_AJ_T0092392.1 MGP_AJ_G0034774.1 mouse_genomes_project 9 48244888 48280872 + MGP_AJ_P0092392 Ppp2r1b protein_coding protein_coding MGP_AJ_T0092393.1 MGP_AJ_G0034774.1 mouse_genomes_project 9 48244901 48269511 + MGP_AJ_P0092393 Ppp2r1b protein_coding protein_coding MGP_AJ_T0092394.1 MGP_AJ_G0034774.1 mouse_genomes_project 9 48244921 48268167 + MGP_AJ_P0092394 Ppp2r1b protein_coding protein_coding MGP_AJ_T0092395.1 MGP_AJ_G0034774.1 mouse_genomes_project 9 48244927 48280879 + MGP_AJ_P0092395 Ppp2r1b protein_coding protein_coding MGP_AJ_T0092396.1 MGP_AJ_G0034774.1 mouse_genomes_project 9 48244928 48280872 + MGP_AJ_P0092396 Ppp2r1b protein_coding protein_coding MGP_AJ_T0092397.1 MGP_AJ_G0034774.1 mouse_genomes_project 9 48244930 48268014 + MGP_AJ_P0092397 Ppp2r1b protein_coding protein_coding MGP_AJ_T0092398.1 MGP_AJ_G0034774.1 mouse_genomes_project 9 48244943 48268487 + MGP_AJ_P0092398 Ppp2r1b protein_coding nonsense_mediated_decay MGP_AJ_T0092399.1 MGP_AJ_G0034774.1 mouse_genomes_project 9 48257929 48268109 + MGP_AJ_P0092399 Ppp2r1b protein_coding nonsense_mediated_decay MGP_AJ_T0092400.1 MGP_AJ_G0034774.1 mouse_genomes_project 9 48261083 48266142 + Ppp2r1b protein_coding processed_transcript MGP_AJ_T0092401.1 MGP_AJ_G0034774.1 mouse_genomes_project 9 48266164 48267216 + Ppp2r1b protein_coding retained_intron MGP_AJ_T0091551.1 MGP_AJ_G0034448.1 mouse_genomes_project 9 18859203 18863881 - MGP_AJ_P0091551 Epor protein_coding protein_coding MGP_AJ_T0101876.1 MGP_AJ_G0039754.1 mouse_genomes_project 9 37695953 37696598 + transcribed_processed_pseudogene processed_transcript MGP_AJ_T0101877.1 MGP_AJ_G0039754.1 mouse_genomes_project 9 37695985 37696568 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0100297.1 MGP_AJ_G0038263.1 mouse_genomes_project 9 88123267 88123438 + Gm22717 snRNA snRNA MGP_AJ_T0093905.1 MGP_AJ_G0035153.1 mouse_genomes_project 9 97428358 97439078 + MGP_AJ_P0093905 A4gnt protein_coding protein_coding MGP_AJ_T0092000.1 MGP_AJ_G0034651.1 mouse_genomes_project 9 38114502 38118392 + MGP_AJ_P0092000 Bsx protein_coding protein_coding MGP_AJ_T0093874.1 MGP_AJ_G0035147.1 mouse_genomes_project 9 97040471 97048416 - MGP_AJ_P0093874 Faiml protein_coding protein_coding MGP_AJ_T0093875.1 MGP_AJ_G0035147.1 mouse_genomes_project 9 97040563 97047547 - MGP_AJ_P0093875 Faiml protein_coding protein_coding MGP_AJ_T0093336.1 MGP_AJ_G0035024.1 mouse_genomes_project 9 73298776 73310845 + MGP_AJ_P0093336 Lysmd2 protein_coding protein_coding MGP_AJ_T0091857.1 MGP_AJ_G0034547.1 mouse_genomes_project 9 34589059 34597515 - MGP_AJ_P0091857 Nrgn protein_coding protein_coding MGP_AJ_T0091858.1 MGP_AJ_G0034547.1 mouse_genomes_project 9 34589521 34590706 - Nrgn protein_coding processed_transcript MGP_AJ_T0091768.1 MGP_AJ_G0034518.1 mouse_genomes_project 9 32557948 32562308 - MGP_AJ_P0091768 Pate4 protein_coding protein_coding MGP_AJ_T0094609.1 MGP_AJ_G0035272.1 mouse_genomes_project 9 106248484 106249384 + Gpx1 protein_coding retained_intron MGP_AJ_T0094610.1 MGP_AJ_G0035272.1 mouse_genomes_project 9 106248635 106249925 + MGP_AJ_P0094610 Gpx1 protein_coding protein_coding MGP_AJ_T0094611.1 MGP_AJ_G0035272.1 mouse_genomes_project 9 106248824 106249832 + MGP_AJ_P0094611 Gpx1 protein_coding protein_coding MGP_AJ_T0094612.1 MGP_AJ_G0035272.1 mouse_genomes_project 9 106248857 106249832 + MGP_AJ_P0094612 Gpx1 protein_coding protein_coding MGP_AJ_T0002379.1 MGP_AJ_G0002289.1 mouse_genomes_project 9 70368787 70371547 + TEC TEC MGP_AJ_T0092878.1 MGP_AJ_G0034916.1 mouse_genomes_project 9 61690701 61695875 + MGP_AJ_P0092878 Rpl4 protein_coding protein_coding MGP_AJ_T0095390.1 MGP_AJ_G0035434.1 mouse_genomes_project 9 120107291 120121008 + MGP_AJ_P0095390 Ackr2 protein_coding protein_coding MGP_AJ_T0093280.1 MGP_AJ_G0035009.1 mouse_genomes_project 9 70759275 70768437 + MGP_AJ_P0093280 Rsl24d1 protein_coding protein_coding MGP_AJ_T0093281.1 MGP_AJ_G0035009.1 mouse_genomes_project 9 70759297 70769058 + MGP_AJ_P0093281 Rsl24d1 protein_coding protein_coding MGP_AJ_T0093282.1 MGP_AJ_G0035009.1 mouse_genomes_project 9 70759352 70768294 + MGP_AJ_P0093282 Rsl24d1 protein_coding nonsense_mediated_decay MGP_AJ_T0093283.1 MGP_AJ_G0035009.1 mouse_genomes_project 9 70760445 70768107 + MGP_AJ_P0093283 Rsl24d1 protein_coding protein_coding MGP_AJ_T0002364.1 MGP_AJ_G0002274.1 mouse_genomes_project 9 69518239 69520981 - TEC TEC MGP_AJ_T0091443.1 MGP_AJ_G0034406.1 mouse_genomes_project 9 17742012 17747678 + MGP_AJ_P0091443 A230050P20Rik protein_coding protein_coding MGP_AJ_T0091444.1 MGP_AJ_G0034406.1 mouse_genomes_project 9 17742028 17747678 + A230050P20Rik protein_coding retained_intron MGP_AJ_T0091445.1 MGP_AJ_G0034406.1 mouse_genomes_project 9 17742050 17743466 + A230050P20Rik protein_coding processed_transcript MGP_AJ_T0091446.1 MGP_AJ_G0034406.1 mouse_genomes_project 9 17742647 17747142 + A230050P20Rik protein_coding retained_intron MGP_AJ_T0091447.1 MGP_AJ_G0034406.1 mouse_genomes_project 9 17744142 17746492 + A230050P20Rik protein_coding retained_intron MGP_AJ_T0011049.1 MGP_AJ_G0009171.1 mouse_genomes_project 9 29038510 29038636 + Gm44453 miRNA miRNA MGP_AJ_T0101560.1 MGP_AJ_G0039526.1 mouse_genomes_project 9 51013634 51013763 + Gm22304 snoRNA snoRNA MGP_AJ_T0092099.1 MGP_AJ_G0034680.1 mouse_genomes_project 9 41587808 41598989 - MGP_AJ_P0092099 Hinfp protein_coding protein_coding MGP_AJ_T0002373.1 MGP_AJ_G0002283.1 mouse_genomes_project 9 70018249 70021002 + TEC TEC MGP_AJ_T0091688.1 MGP_AJ_G0034498.1 mouse_genomes_project 9 28395696 28435505 - MGP_AJ_P0091688 Tmem45b protein_coding protein_coding MGP_AJ_T0094367.1 MGP_AJ_G0035239.1 mouse_genomes_project 9 105473938 105478714 + MGP_AJ_P0094367 Hyal1 protein_coding protein_coding MGP_AJ_T0094368.1 MGP_AJ_G0035239.1 mouse_genomes_project 9 105473949 105476570 + MGP_AJ_P0094368 Hyal1 protein_coding protein_coding MGP_AJ_T0094369.1 MGP_AJ_G0035239.1 mouse_genomes_project 9 105473969 105477990 + MGP_AJ_P0094369 Hyal1 protein_coding protein_coding MGP_AJ_T0094370.1 MGP_AJ_G0035239.1 mouse_genomes_project 9 105474001 105476426 + MGP_AJ_P0094370 Hyal1 protein_coding protein_coding MGP_AJ_T0094377.1 MGP_AJ_G0035239.1 mouse_genomes_project 9 105476604 105478683 + Hyal1 protein_coding retained_intron MGP_AJ_T0011032.1 MGP_AJ_G0009154.1 mouse_genomes_project 9 4753312 4753363 + Mir5618 miRNA miRNA MGP_AJ_T0095413.1 MGP_AJ_G0035443.1 mouse_genomes_project 9 120993333 121023944 + MGP_AJ_P0095413 Tcaim protein_coding protein_coding MGP_AJ_T0095414.1 MGP_AJ_G0035443.1 mouse_genomes_project 9 120993355 120999642 + Tcaim protein_coding processed_transcript MGP_AJ_T0095415.1 MGP_AJ_G0035443.1 mouse_genomes_project 9 120993390 121023937 + MGP_AJ_P0095415 Tcaim protein_coding nonsense_mediated_decay MGP_AJ_T0093948.1 MGP_AJ_G0035161.1 mouse_genomes_project 9 98824626 98882435 - MGP_AJ_P0093948 Pccb protein_coding protein_coding MGP_AJ_T0093949.1 MGP_AJ_G0035161.1 mouse_genomes_project 9 98824626 98882414 - MGP_AJ_P0093949 Pccb protein_coding protein_coding MGP_AJ_T0093950.1 MGP_AJ_G0035161.1 mouse_genomes_project 9 98826961 98828243 - Pccb protein_coding retained_intron MGP_AJ_T0093951.1 MGP_AJ_G0035161.1 mouse_genomes_project 9 98841496 98882408 - MGP_AJ_P0093951 Pccb protein_coding protein_coding MGP_AJ_T0093952.1 MGP_AJ_G0035161.1 mouse_genomes_project 9 98859819 98882396 - Pccb protein_coding processed_transcript MGP_AJ_T0093953.1 MGP_AJ_G0035161.1 mouse_genomes_project 9 98870635 98882418 - MGP_AJ_P0093953 Pccb protein_coding protein_coding MGP_AJ_T0095165.1 MGP_AJ_G0035363.1 mouse_genomes_project 9 112023754 112088409 - MGP_AJ_P0095165 Fbxl2 protein_coding protein_coding MGP_AJ_T0095166.1 MGP_AJ_G0035363.1 mouse_genomes_project 9 112037029 112088441 - MGP_AJ_P0095166 Fbxl2 protein_coding protein_coding MGP_AJ_T0095167.1 MGP_AJ_G0035363.1 mouse_genomes_project 9 112038359 112088406 - MGP_AJ_P0095167 Fbxl2 protein_coding nonsense_mediated_decay MGP_AJ_T0095168.1 MGP_AJ_G0035363.1 mouse_genomes_project 9 112043661 112052637 - Fbxl2 protein_coding retained_intron MGP_AJ_T0095169.1 MGP_AJ_G0035363.1 mouse_genomes_project 9 112050526 112088454 - Fbxl2 protein_coding retained_intron MGP_AJ_T0095170.1 MGP_AJ_G0035363.1 mouse_genomes_project 9 112065400 112112701 - Fbxl2 protein_coding processed_transcript MGP_AJ_T0002440.1 MGP_AJ_G0002349.1 mouse_genomes_project 9 100110479 100111708 + TEC TEC MGP_AJ_T0002371.1 MGP_AJ_G0002281.1 mouse_genomes_project 9 69988022 69989581 + TEC TEC MGP_AJ_T0091922.1 MGP_AJ_G0034600.1 mouse_genomes_project 9 36134354 36135287 - MGP_AJ_P0091922 Olfr934 protein_coding protein_coding MGP_AJ_T0092493.1 MGP_AJ_G0034811.1 mouse_genomes_project 9 52102737 52111093 + MGP_AJ_P0092493 Crabp1 protein_coding protein_coding MGP_AJ_T0091906.1 MGP_AJ_G0034590.1 mouse_genomes_project 9 35867789 35892912 + MGP_AJ_P0091906 Vwa5a protein_coding protein_coding MGP_AJ_T0091907.1 MGP_AJ_G0034590.1 mouse_genomes_project 9 35867793 35892337 + MGP_AJ_P0091907 Vwa5a protein_coding protein_coding MGP_AJ_T0091908.1 MGP_AJ_G0034590.1 mouse_genomes_project 9 35868559 35872167 + MGP_AJ_P0091908 Vwa5a protein_coding protein_coding MGP_AJ_T0091909.1 MGP_AJ_G0034590.1 mouse_genomes_project 9 35878042 35884261 + Vwa5a protein_coding retained_intron MGP_AJ_T0091910.1 MGP_AJ_G0034590.1 mouse_genomes_project 9 35884052 35885688 + Vwa5a protein_coding retained_intron MGP_AJ_T0091911.1 MGP_AJ_G0034590.1 mouse_genomes_project 9 35885528 35887532 + Vwa5a protein_coding retained_intron MGP_AJ_T0091912.1 MGP_AJ_G0034590.1 mouse_genomes_project 9 35885726 35891495 + MGP_AJ_P0091912 Vwa5a protein_coding nonsense_mediated_decay MGP_AJ_T0093029.1 MGP_AJ_G0034959.1 mouse_genomes_project 9 64331101 64354004 - MGP_AJ_P0093029 Aph1b protein_coding nonsense_mediated_decay MGP_AJ_T0093030.1 MGP_AJ_G0034959.1 mouse_genomes_project 9 64337100 64353933 - MGP_AJ_P0093030 Aph1b protein_coding protein_coding MGP_AJ_T0093031.1 MGP_AJ_G0034959.1 mouse_genomes_project 9 64337775 64353944 - MGP_AJ_P0093031 Aph1b protein_coding protein_coding MGP_AJ_T0011744.1 MGP_AJ_G0009866.1 mouse_genomes_project 9 96501598 96501705 - Gm27919 misc_RNA misc_RNA MGP_AJ_T0011055.1 MGP_AJ_G0009177.1 mouse_genomes_project 9 40129950 40130029 - Gm27509 miRNA miRNA MGP_AJ_T0101547.1 MGP_AJ_G0039513.1 mouse_genomes_project 9 22514549 22514677 - Gm25346 snoRNA snoRNA MGP_AJ_T0092710.1 MGP_AJ_G0034875.1 mouse_genomes_project 9 56076771 56083368 - Rec114 protein_coding processed_transcript MGP_AJ_T0092711.1 MGP_AJ_G0034875.1 mouse_genomes_project 9 56076777 56168358 - MGP_AJ_P0092711 Rec114 protein_coding protein_coding MGP_AJ_T0092712.1 MGP_AJ_G0034875.1 mouse_genomes_project 9 56076799 56088346 - Rec114 protein_coding processed_transcript MGP_AJ_T0092713.1 MGP_AJ_G0034875.1 mouse_genomes_project 9 56076802 56084444 - MGP_AJ_P0092713 Rec114 protein_coding protein_coding MGP_AJ_T0092714.1 MGP_AJ_G0034875.1 mouse_genomes_project 9 56089939 56170763 - MGP_AJ_P0092714 Rec114 protein_coding protein_coding MGP_AJ_T0092269.1 MGP_AJ_G0034734.1 mouse_genomes_project 9 43629815 43640580 + Bud13 protein_coding retained_intron MGP_AJ_T0092270.1 MGP_AJ_G0034734.1 mouse_genomes_project 9 43629815 43645251 + MGP_AJ_P0092270 Bud13 protein_coding protein_coding MGP_AJ_T0092271.1 MGP_AJ_G0034734.1 mouse_genomes_project 9 43635074 43645251 + MGP_AJ_P0092271 Bud13 protein_coding nonsense_mediated_decay MGP_AJ_T0092272.1 MGP_AJ_G0034734.1 mouse_genomes_project 9 43635096 43637172 + Bud13 protein_coding retained_intron MGP_AJ_T0099140.1 MGP_AJ_G0037106.1 mouse_genomes_project 9 121978085 121997649 - Gm17021 sense_overlapping sense_overlapping MGP_AJ_T0101566.1 MGP_AJ_G0039532.1 mouse_genomes_project 9 61694437 61694508 + Gm22455 snoRNA snoRNA MGP_AJ_T0092933.1 MGP_AJ_G0034937.1 mouse_genomes_project 9 62934473 62950742 + MGP_AJ_P0092933 Rasl12 protein_coding protein_coding MGP_AJ_T0092934.1 MGP_AJ_G0034937.1 mouse_genomes_project 9 62934473 62948596 + MGP_AJ_P0092934 Rasl12 protein_coding protein_coding MGP_AJ_T0095026.1 MGP_AJ_G0035335.1 mouse_genomes_project 9 108782848 108807937 - MGP_AJ_P0095026 Pth1r protein_coding protein_coding MGP_AJ_T0095027.1 MGP_AJ_G0035335.1 mouse_genomes_project 9 108782851 108804445 - MGP_AJ_P0095027 Pth1r protein_coding protein_coding MGP_AJ_T0095028.1 MGP_AJ_G0035335.1 mouse_genomes_project 9 108782905 108803478 - MGP_AJ_P0095028 Pth1r protein_coding protein_coding MGP_AJ_T0095029.1 MGP_AJ_G0035335.1 mouse_genomes_project 9 108788199 108807871 - MGP_AJ_P0095029 Pth1r protein_coding protein_coding MGP_AJ_T0095030.1 MGP_AJ_G0035335.1 mouse_genomes_project 9 108792339 108807960 - MGP_AJ_P0095030 Pth1r protein_coding protein_coding MGP_AJ_T0009270.1 MGP_AJ_G0007447.1 mouse_genomes_project 9 69838416 69861576 - Gm27188 lincRNA lincRNA MGP_AJ_T0016183.1 MGP_AJ_G0014278.1 mouse_genomes_project 9 118531996 118532586 + processed_pseudogene processed_pseudogene MGP_AJ_T0094602.1 MGP_AJ_G0035270.1 mouse_genomes_project 9 106211628 106214618 - MGP_AJ_P0094602 Tcta protein_coding protein_coding MGP_AJ_T0094603.1 MGP_AJ_G0035270.1 mouse_genomes_project 9 106212324 106214788 - MGP_AJ_P0094603 Tcta protein_coding protein_coding MGP_AJ_T0094604.1 MGP_AJ_G0035270.1 mouse_genomes_project 9 106212560 106214576 - MGP_AJ_P0094604 Tcta protein_coding protein_coding MGP_AJ_T0009324.1 MGP_AJ_G0007491.1 mouse_genomes_project 9 100176924 100186060 + Gm26846 lincRNA lincRNA MGP_AJ_T0092672.1 MGP_AJ_G0034866.1 mouse_genomes_project 9 55563042 55565999 - MGP_AJ_P0092672 Islr protein_coding protein_coding MGP_AJ_T0092673.1 MGP_AJ_G0034866.1 mouse_genomes_project 9 55563042 55565332 - MGP_AJ_P0092673 Islr protein_coding protein_coding MGP_AJ_T0091144.1 MGP_AJ_G0034285.1 mouse_genomes_project 9 1170387 1185215 - MGP_AJ_P0091144 Aasdhppt protein_coding protein_coding MGP_AJ_T0094151.1 MGP_AJ_G0035197.1 mouse_genomes_project 9 103560717 103703478 - MGP_AJ_P0094151 Col6a6 protein_coding protein_coding MGP_AJ_T0094152.1 MGP_AJ_G0035197.1 mouse_genomes_project 9 103648367 103685303 - MGP_AJ_P0094152 Col6a6 protein_coding protein_coding MGP_AJ_T0093124.1 MGP_AJ_G0034980.1 mouse_genomes_project 9 68033098 68048374 - MGP_AJ_P0093124 Ccnb2 protein_coding protein_coding MGP_AJ_T0016112.1 MGP_AJ_G0014207.1 mouse_genomes_project 9 80827339 80827505 - processed_pseudogene processed_pseudogene MGP_AJ_T0091366.1 MGP_AJ_G0034368.1 mouse_genomes_project 9 16233343 16234273 + MGP_AJ_P0091366 protein_coding protein_coding MGP_AJ_T0016178.1 MGP_AJ_G0014273.1 mouse_genomes_project 9 108022428 108023517 + processed_pseudogene processed_pseudogene MGP_AJ_T0093840.1 MGP_AJ_G0035132.1 mouse_genomes_project 9 95152765 95172864 - MGP_AJ_P0093840 Trim42 protein_coding protein_coding MGP_AJ_T0094767.1 MGP_AJ_G0035293.1 mouse_genomes_project 9 106749971 106778693 + MGP_AJ_P0094767 Celsr3 protein_coding protein_coding MGP_AJ_T0094768.1 MGP_AJ_G0035293.1 mouse_genomes_project 9 106750769 106778700 + MGP_AJ_P0094768 Celsr3 protein_coding unknown_likely_coding MGP_AJ_T0094769.1 MGP_AJ_G0035293.1 mouse_genomes_project 9 106755391 106756472 + MGP_AJ_P0094769 Celsr3 protein_coding protein_coding MGP_AJ_T0094770.1 MGP_AJ_G0035293.1 mouse_genomes_project 9 106758123 106760226 + Celsr3 protein_coding retained_intron MGP_AJ_T0094771.1 MGP_AJ_G0035293.1 mouse_genomes_project 9 106766250 106766867 + Celsr3 protein_coding retained_intron MGP_AJ_T0094772.1 MGP_AJ_G0035293.1 mouse_genomes_project 9 106766876 106767562 + Celsr3 protein_coding retained_intron MGP_AJ_T0094773.1 MGP_AJ_G0035293.1 mouse_genomes_project 9 106766894 106774484 + MGP_AJ_P0094773 Celsr3 protein_coding protein_coding MGP_AJ_T0092829.1 MGP_AJ_G0034904.1 mouse_genomes_project 9 60341933 60355504 + MGP_AJ_P0092829 Cln6 protein_coding protein_coding MGP_AJ_T0092830.1 MGP_AJ_G0034904.1 mouse_genomes_project 9 60341940 60349516 + MGP_AJ_P0092830 Cln6 protein_coding nonsense_mediated_decay MGP_AJ_T0092831.1 MGP_AJ_G0034904.1 mouse_genomes_project 9 60349512 60354209 + MGP_AJ_P0092831 Cln6 protein_coding nonsense_mediated_decay MGP_AJ_T0092832.1 MGP_AJ_G0034904.1 mouse_genomes_project 9 60350530 60354660 + MGP_AJ_P0092832 Cln6 protein_coding protein_coding MGP_AJ_T0095320.1 MGP_AJ_G0035416.1 mouse_genomes_project 9 118710757 118713361 + MGP_AJ_P0095320 Eif1b protein_coding protein_coding MGP_AJ_T0016149.1 MGP_AJ_G0014244.1 mouse_genomes_project 9 94842625 94842926 - processed_pseudogene processed_pseudogene MGP_AJ_T0101558.1 MGP_AJ_G0039524.1 mouse_genomes_project 9 43925629 43925759 + Gm22659 snoRNA snoRNA MGP_AJ_T0092087.1 MGP_AJ_G0034677.1 mouse_genomes_project 9 41537806 41541959 - MGP_AJ_P0092087 Pdzd3 protein_coding protein_coding MGP_AJ_T0094171.1 MGP_AJ_G0035203.1 mouse_genomes_project 9 104098140 104110615 + MGP_AJ_P0094171 Twf2 protein_coding protein_coding MGP_AJ_T0094172.1 MGP_AJ_G0035203.1 mouse_genomes_project 9 104098169 104107469 + MGP_AJ_P0094172 Twf2 protein_coding nonsense_mediated_decay MGP_AJ_T0094173.1 MGP_AJ_G0035203.1 mouse_genomes_project 9 104098177 104108048 + MGP_AJ_P0094173 Twf2 protein_coding nonsense_mediated_decay MGP_AJ_T0094174.1 MGP_AJ_G0035203.1 mouse_genomes_project 9 104101917 104110613 + MGP_AJ_P0094174 Twf2 protein_coding protein_coding MGP_AJ_T0094175.1 MGP_AJ_G0035203.1 mouse_genomes_project 9 104109453 104110247 + Twf2 protein_coding retained_intron MGP_AJ_T0101586.1 MGP_AJ_G0039552.1 mouse_genomes_project 9 97567055 97567182 - Gm23949 snoRNA snoRNA MGP_AJ_T0018594.1 MGP_AJ_G0015741.1 mouse_genomes_project 9 115447632 115449761 + Gm17396 processed_transcript processed_transcript MGP_AJ_T0101543.1 MGP_AJ_G0039509.1 mouse_genomes_project 9 17765352 17765432 + Gm23008 snoRNA snoRNA MGP_AJ_T0101530.1 MGP_AJ_G0039496.1 mouse_genomes_project 9 1989775 1989910 + Gm24896 snoRNA snoRNA MGP_AJ_T0002394.1 MGP_AJ_G0002304.1 mouse_genomes_project 9 81198097 81200718 + TEC TEC MGP_AJ_T0093389.1 MGP_AJ_G0035038.1 mouse_genomes_project 9 75807659 75834914 - MGP_AJ_P0093389 protein_coding protein_coding MGP_AJ_T0093390.1 MGP_AJ_G0035038.1 mouse_genomes_project 9 75807662 75835323 - MGP_AJ_P0093390 protein_coding protein_coding MGP_AJ_T0093391.1 MGP_AJ_G0035038.1 mouse_genomes_project 9 75808001 75810970 - protein_coding retained_intron MGP_AJ_T0093392.1 MGP_AJ_G0035038.1 mouse_genomes_project 9 75811936 75813875 - protein_coding retained_intron MGP_AJ_T0093393.1 MGP_AJ_G0035038.1 mouse_genomes_project 9 75821728 75834862 - MGP_AJ_P0093393 protein_coding protein_coding MGP_AJ_T0093394.1 MGP_AJ_G0035038.1 mouse_genomes_project 9 75826016 75834845 - MGP_AJ_P0093394 protein_coding protein_coding MGP_AJ_T0002387.1 MGP_AJ_G0002297.1 mouse_genomes_project 9 73343474 73344162 + TEC TEC MGP_AJ_T0011082.1 MGP_AJ_G0009204.1 mouse_genomes_project 9 76263856 76263953 - Gm26377 miRNA miRNA MGP_AJ_T0002455.1 MGP_AJ_G0002364.1 mouse_genomes_project 9 105579012 105580211 + TEC TEC MGP_AJ_T0094761.1 MGP_AJ_G0035292.1 mouse_genomes_project 9 106732008 106742516 + MGP_AJ_P0094761 Nckipsd protein_coding protein_coding MGP_AJ_T0094762.1 MGP_AJ_G0035292.1 mouse_genomes_project 9 106732013 106734790 + MGP_AJ_P0094762 Nckipsd protein_coding protein_coding MGP_AJ_T0094763.1 MGP_AJ_G0035292.1 mouse_genomes_project 9 106732061 106735274 + MGP_AJ_P0094763 Nckipsd protein_coding protein_coding MGP_AJ_T0094764.1 MGP_AJ_G0035292.1 mouse_genomes_project 9 106735593 106737750 + MGP_AJ_P0094764 Nckipsd protein_coding protein_coding MGP_AJ_T0094765.1 MGP_AJ_G0035292.1 mouse_genomes_project 9 106737096 106737995 + Nckipsd protein_coding retained_intron MGP_AJ_T0094766.1 MGP_AJ_G0035292.1 mouse_genomes_project 9 106738504 106739791 + Nckipsd protein_coding retained_intron MGP_AJ_T0092500.1 MGP_AJ_G0034815.1 mouse_genomes_project 9 52289907 52297148 + MGP_AJ_P0092500 Psma4 protein_coding protein_coding MGP_AJ_T0092501.1 MGP_AJ_G0034815.1 mouse_genomes_project 9 52289915 52295504 + Psma4 protein_coding retained_intron MGP_AJ_T0092502.1 MGP_AJ_G0034815.1 mouse_genomes_project 9 52289922 52294150 + Psma4 protein_coding retained_intron MGP_AJ_T0092503.1 MGP_AJ_G0034815.1 mouse_genomes_project 9 52289932 52291924 + Psma4 protein_coding processed_transcript MGP_AJ_T0092504.1 MGP_AJ_G0034815.1 mouse_genomes_project 9 52289932 52296051 + MGP_AJ_P0092504 Psma4 protein_coding protein_coding MGP_AJ_T0092505.1 MGP_AJ_G0034815.1 mouse_genomes_project 9 52290007 52292544 + Psma4 protein_coding retained_intron MGP_AJ_T0092506.1 MGP_AJ_G0034815.1 mouse_genomes_project 9 52290221 52295417 + MGP_AJ_P0092506 Psma4 protein_coding protein_coding MGP_AJ_T0101600.1 MGP_AJ_G0039566.1 mouse_genomes_project 9 117525762 117525891 - Gm22729 snoRNA snoRNA MGP_AJ_T0095484.1 MGP_AJ_G0035470.1 mouse_genomes_project 9 122316290 122327877 + MGP_AJ_P0095484 Ccr2 protein_coding protein_coding MGP_AJ_T0095485.1 MGP_AJ_G0035470.1 mouse_genomes_project 9 122316491 122323460 + MGP_AJ_P0095485 Ccr2 protein_coding protein_coding MGP_AJ_T0095486.1 MGP_AJ_G0035470.1 mouse_genomes_project 9 122316516 122322870 + MGP_AJ_P0095486 Ccr2 protein_coding protein_coding MGP_AJ_T0095487.1 MGP_AJ_G0035470.1 mouse_genomes_project 9 122319945 122323460 + MGP_AJ_P0095487 Ccr2 protein_coding protein_coding MGP_AJ_T0093596.1 MGP_AJ_G0035082.1 mouse_genomes_project 9 84803284 84807664 + MGP_AJ_P0093596 Ripply2 protein_coding protein_coding MGP_AJ_T0093597.1 MGP_AJ_G0035082.1 mouse_genomes_project 9 84803383 84807663 + MGP_AJ_P0093597 Ripply2 protein_coding protein_coding MGP_AJ_T0092511.1 MGP_AJ_G0034819.1 mouse_genomes_project 9 52488117 52545273 + MGP_AJ_P0092511 Ube2q2 protein_coding protein_coding MGP_AJ_T0092512.1 MGP_AJ_G0034819.1 mouse_genomes_project 9 52488357 52546408 + MGP_AJ_P0092512 Ube2q2 protein_coding protein_coding MGP_AJ_T0092513.1 MGP_AJ_G0034819.1 mouse_genomes_project 9 52533287 52545084 + Ube2q2 protein_coding retained_intron MGP_AJ_T0009296.1 MGP_AJ_G0007470.1 mouse_genomes_project 9 87616542 87654027 + 4930524O08Rik lincRNA lincRNA MGP_AJ_T0009297.1 MGP_AJ_G0007470.1 mouse_genomes_project 9 87616967 87628990 + 4930524O08Rik lincRNA lincRNA MGP_AJ_T0009298.1 MGP_AJ_G0007470.1 mouse_genomes_project 9 87617005 87628332 + 4930524O08Rik lincRNA lincRNA MGP_AJ_T0092295.1 MGP_AJ_G0034743.1 mouse_genomes_project 9 45873175 45873795 + MGP_AJ_P0092295 Gm5617 protein_coding protein_coding MGP_AJ_T0091174.1 MGP_AJ_G0034295.1 mouse_genomes_project 9 4120406 4140888 + MGP_AJ_P0091174 Dcun1d5 protein_coding protein_coding MGP_AJ_T0100278.1 MGP_AJ_G0038244.1 mouse_genomes_project 9 63453686 63453793 + Gm23248 snRNA snRNA MGP_AJ_T0091949.1 MGP_AJ_G0034621.1 mouse_genomes_project 9 36842839 36843788 + MGP_AJ_P0091949 Olfr961 protein_coding protein_coding MGP_AJ_T0091143.1 MGP_AJ_G0034284.1 mouse_genomes_project 9 373339 767339 + MGP_AJ_P0091143 Gucy1a2 protein_coding protein_coding MGP_AJ_T0093094.1 MGP_AJ_G0034974.1 mouse_genomes_project 9 67370230 67373451 - MGP_AJ_P0093094 Foxb1 protein_coding protein_coding MGP_AJ_T0009274.1 MGP_AJ_G0007451.1 mouse_genomes_project 9 70839614 70920747 + Gm27211 lincRNA lincRNA MGP_AJ_T0092462.1 MGP_AJ_G0034799.1 mouse_genomes_project 9 51254698 51255178 + MGP_AJ_P0092462 Gm16380 protein_coding protein_coding MGP_AJ_T0018581.1 MGP_AJ_G0015736.1 mouse_genomes_project 9 105957466 105964384 + Gm20529 processed_transcript processed_transcript MGP_AJ_T0092286.1 MGP_AJ_G0034738.1 mouse_genomes_project 9 45693804 45717629 - MGP_AJ_P0092286 Nxpe2 protein_coding protein_coding MGP_AJ_T0092287.1 MGP_AJ_G0034738.1 mouse_genomes_project 9 45694942 45717565 - MGP_AJ_P0092287 Nxpe2 protein_coding nonsense_mediated_decay MGP_AJ_T0092288.1 MGP_AJ_G0034738.1 mouse_genomes_project 9 45703251 45731382 - MGP_AJ_P0092288 Nxpe2 protein_coding protein_coding MGP_AJ_T0092289.1 MGP_AJ_G0034738.1 mouse_genomes_project 9 45707945 45717585 - Nxpe2 protein_coding processed_transcript MGP_AJ_T0092290.1 MGP_AJ_G0034738.1 mouse_genomes_project 9 45708273 45731382 - Nxpe2 protein_coding processed_transcript MGP_AJ_T0016136.1 MGP_AJ_G0014231.1 mouse_genomes_project 9 90431142 90431608 - processed_pseudogene processed_pseudogene MGP_AJ_T0091605.1 MGP_AJ_G0034472.1 mouse_genomes_project 9 21544323 21544966 + MGP_AJ_P0091605 Cypt4 protein_coding protein_coding MGP_AJ_T0094646.1 MGP_AJ_G0035279.1 mouse_genomes_project 9 106392773 106393419 + MGP_AJ_P0094646 Lamb2 protein_coding protein_coding MGP_AJ_T0094647.1 MGP_AJ_G0035279.1 mouse_genomes_project 9 106392894 106403568 + MGP_AJ_P0094647 Lamb2 protein_coding protein_coding MGP_AJ_T0094648.1 MGP_AJ_G0035279.1 mouse_genomes_project 9 106392909 106393691 + MGP_AJ_P0094648 Lamb2 protein_coding protein_coding MGP_AJ_T0094649.1 MGP_AJ_G0035279.1 mouse_genomes_project 9 106392915 106393624 + MGP_AJ_P0094649 Lamb2 protein_coding protein_coding MGP_AJ_T0094650.1 MGP_AJ_G0035279.1 mouse_genomes_project 9 106392918 106393222 + Lamb2 protein_coding retained_intron MGP_AJ_T0094651.1 MGP_AJ_G0035279.1 mouse_genomes_project 9 106400855 106401709 + Lamb2 protein_coding retained_intron MGP_AJ_T0094652.1 MGP_AJ_G0035279.1 mouse_genomes_project 9 106401914 106402570 + Lamb2 protein_coding retained_intron MGP_AJ_T0091963.1 MGP_AJ_G0034635.1 mouse_genomes_project 9 37184722 37185658 + MGP_AJ_P0091963 Olfr978 protein_coding protein_coding MGP_AJ_T0092202.1 MGP_AJ_G0034716.1 mouse_genomes_project 9 42582211 42597510 - MGP_AJ_P0092202 Il10ra protein_coding protein_coding MGP_AJ_T0092203.1 MGP_AJ_G0034716.1 mouse_genomes_project 9 42582214 42597510 - MGP_AJ_P0092203 Il10ra protein_coding nonsense_mediated_decay MGP_AJ_T0092204.1 MGP_AJ_G0034716.1 mouse_genomes_project 9 42582901 42597507 - MGP_AJ_P0092204 Il10ra protein_coding protein_coding MGP_AJ_T0093323.1 MGP_AJ_G0035018.1 mouse_genomes_project 9 73000303 73004165 + MGP_AJ_P0093323 Bcl2l10 protein_coding protein_coding MGP_AJ_T0011045.1 MGP_AJ_G0009167.1 mouse_genomes_project 9 18511929 18512062 - Mir1946b miRNA miRNA MGP_AJ_T0091577.1 MGP_AJ_G0034462.1 mouse_genomes_project 9 19186749 19218553 - MGP_AJ_P0091577 Zfp810 protein_coding protein_coding MGP_AJ_T0016079.1 MGP_AJ_G0014174.1 mouse_genomes_project 9 69448343 69448605 - processed_pseudogene processed_pseudogene MGP_AJ_T0095176.1 MGP_AJ_G0035368.1 mouse_genomes_project 9 112648461 112654313 - MGP_AJ_P0095176 Ccr4 protein_coding protein_coding MGP_AJ_T0093865.1 MGP_AJ_G0035143.1 mouse_genomes_project 9 96757373 96758614 + MGP_AJ_P0093865 Foxl2 protein_coding protein_coding MGP_AJ_T0094875.1 MGP_AJ_G0035314.1 mouse_genomes_project 9 107522834 107538576 - MGP_AJ_P0094875 Fbxw15 protein_coding protein_coding MGP_AJ_T0094876.1 MGP_AJ_G0035314.1 mouse_genomes_project 9 107527313 107538562 - MGP_AJ_P0094876 Fbxw15 protein_coding protein_coding MGP_AJ_T0011098.1 MGP_AJ_G0009220.1 mouse_genomes_project 9 106849751 106849833 + Mir711 miRNA miRNA MGP_AJ_T0005514.1 MGP_AJ_G0004654.1 mouse_genomes_project 9 101316338 101337290 + Gm16252 antisense antisense MGP_AJ_T0093431.1 MGP_AJ_G0035053.1 mouse_genomes_project 9 76325871 76368588 - MGP_AJ_P0093431 Slc17a5 protein_coding protein_coding MGP_AJ_T0093432.1 MGP_AJ_G0035053.1 mouse_genomes_project 9 76325889 76368562 - MGP_AJ_P0093432 Slc17a5 protein_coding protein_coding MGP_AJ_T0093433.1 MGP_AJ_G0035053.1 mouse_genomes_project 9 76350394 76368574 - MGP_AJ_P0093433 Slc17a5 protein_coding protein_coding MGP_AJ_T0016161.1 MGP_AJ_G0014256.1 mouse_genomes_project 9 99267059 99267422 - processed_pseudogene processed_pseudogene MGP_AJ_T0002409.1 MGP_AJ_G0002318.1 mouse_genomes_project 9 88936394 88938694 - TEC TEC MGP_AJ_T0091877.1 MGP_AJ_G0034561.1 mouse_genomes_project 9 35173042 35173972 + MGP_AJ_P0091877 Olfr887 protein_coding protein_coding MGP_AJ_T0092291.1 MGP_AJ_G0034739.1 mouse_genomes_project 9 45740192 45775846 + MGP_AJ_P0092291 Nxpe4 protein_coding protein_coding MGP_AJ_T0092273.1 MGP_AJ_G0034735.1 mouse_genomes_project 9 43649765 43666134 - MGP_AJ_P0092273 4931429L15Rik protein_coding protein_coding MGP_AJ_T0092274.1 MGP_AJ_G0034735.1 mouse_genomes_project 9 43650422 43657847 - MGP_AJ_P0092274 4931429L15Rik protein_coding protein_coding MGP_AJ_T0092275.1 MGP_AJ_G0034735.1 mouse_genomes_project 9 43656558 43662200 - MGP_AJ_P0092275 4931429L15Rik protein_coding protein_coding MGP_AJ_T0009224.1 MGP_AJ_G0007411.1 mouse_genomes_project 9 29868901 29892901 - Gm27162 lincRNA lincRNA MGP_AJ_T0094743.1 MGP_AJ_G0035290.1 mouse_genomes_project 9 106611137 106651166 + MGP_AJ_P0094743 Prkar2a protein_coding protein_coding MGP_AJ_T0094744.1 MGP_AJ_G0035290.1 mouse_genomes_project 9 106613960 106672930 + MGP_AJ_P0094744 Prkar2a protein_coding protein_coding MGP_AJ_T0094745.1 MGP_AJ_G0035290.1 mouse_genomes_project 9 106614274 106669489 + MGP_AJ_P0094745 Prkar2a protein_coding protein_coding MGP_AJ_T0094746.1 MGP_AJ_G0035290.1 mouse_genomes_project 9 106639728 106666810 + MGP_AJ_P0094746 Prkar2a protein_coding protein_coding MGP_AJ_T0094747.1 MGP_AJ_G0035290.1 mouse_genomes_project 9 106662532 106663848 + Prkar2a protein_coding retained_intron MGP_AJ_T0094748.1 MGP_AJ_G0035290.1 mouse_genomes_project 9 106670739 106671998 + Prkar2a protein_coding processed_transcript MGP_AJ_T0092570.1 MGP_AJ_G0034836.1 mouse_genomes_project 9 54291686 54292610 + MGP_AJ_P0092570 Imp3 protein_coding protein_coding MGP_AJ_T0091902.1 MGP_AJ_G0034586.1 mouse_genomes_project 9 35805312 35806245 - MGP_AJ_P0091902 Olfr916 protein_coding protein_coding MGP_AJ_T0091142.1 MGP_AJ_G0034283.1 mouse_genomes_project 9 250037 322456 + MGP_AJ_P0091142 Cwf19l2 protein_coding protein_coding MGP_AJ_T0100267.1 MGP_AJ_G0038233.1 mouse_genomes_project 9 43994616 43994723 - Gm22805 snRNA snRNA MGP_AJ_T0091900.1 MGP_AJ_G0034584.1 mouse_genomes_project 9 35708811 35711182 + MGP_AJ_P0091900 Olfr913 protein_coding protein_coding MGP_AJ_T0002392.1 MGP_AJ_G0002302.1 mouse_genomes_project 9 79767733 79768337 + TEC TEC MGP_AJ_T0092535.1 MGP_AJ_G0034823.1 mouse_genomes_project 9 52795528 52855663 - MGP_AJ_P0092535 Etfa protein_coding protein_coding MGP_AJ_T0092536.1 MGP_AJ_G0034823.1 mouse_genomes_project 9 52817057 52830016 - Etfa protein_coding processed_transcript MGP_AJ_T0092537.1 MGP_AJ_G0034823.1 mouse_genomes_project 9 52829239 52855540 - Etfa protein_coding processed_transcript MGP_AJ_T0092538.1 MGP_AJ_G0034823.1 mouse_genomes_project 9 52831328 52855228 - Etfa protein_coding processed_transcript MGP_AJ_T0093666.1 MGP_AJ_G0035101.1 mouse_genomes_project 9 87881870 87904761 - Morf4l1 protein_coding retained_intron MGP_AJ_T0093667.1 MGP_AJ_G0035101.1 mouse_genomes_project 9 87882312 87904865 - MGP_AJ_P0093667 Morf4l1 protein_coding protein_coding MGP_AJ_T0093668.1 MGP_AJ_G0035101.1 mouse_genomes_project 9 87882517 87904696 - MGP_AJ_P0093668 Morf4l1 protein_coding unknown_likely_coding MGP_AJ_T0093669.1 MGP_AJ_G0035101.1 mouse_genomes_project 9 87882601 87904410 - Morf4l1 protein_coding processed_transcript MGP_AJ_T0093670.1 MGP_AJ_G0035101.1 mouse_genomes_project 9 87884378 87886086 - Morf4l1 protein_coding retained_intron MGP_AJ_T0093671.1 MGP_AJ_G0035101.1 mouse_genomes_project 9 87887151 87888058 - Morf4l1 protein_coding retained_intron MGP_AJ_T0093672.1 MGP_AJ_G0035101.1 mouse_genomes_project 9 87887576 87904780 - MGP_AJ_P0093672 Morf4l1 protein_coding protein_coding MGP_AJ_T0093673.1 MGP_AJ_G0035101.1 mouse_genomes_project 9 87888054 87904650 - Morf4l1 protein_coding processed_transcript MGP_AJ_T0093674.1 MGP_AJ_G0035101.1 mouse_genomes_project 9 87888054 87904819 - MGP_AJ_P0093674 Morf4l1 protein_coding nonsense_mediated_decay MGP_AJ_T0093675.1 MGP_AJ_G0035101.1 mouse_genomes_project 9 87892079 87904731 - Morf4l1 protein_coding retained_intron MGP_AJ_T0093676.1 MGP_AJ_G0035101.1 mouse_genomes_project 9 87897767 87904704 - Morf4l1 protein_coding retained_intron MGP_AJ_T0092192.1 MGP_AJ_G0034713.1 mouse_genomes_project 9 42464739 42480538 + MGP_AJ_P0092192 Scn4b protein_coding protein_coding MGP_AJ_T0093793.1 MGP_AJ_G0035125.1 mouse_genomes_project 9 94255177 94264911 - MGP_AJ_P0093793 Rnf7 protein_coding protein_coding MGP_AJ_T0093795.1 MGP_AJ_G0035125.1 mouse_genomes_project 9 94258836 94264824 - Rnf7 protein_coding processed_transcript MGP_AJ_T0005424.1 MGP_AJ_G0004594.1 mouse_genomes_project 9 29688115 29689635 - Gm27240 antisense antisense MGP_AJ_T0094815.1 MGP_AJ_G0035300.1 mouse_genomes_project 9 106913939 106930881 + MGP_AJ_P0094815 Shisa5 protein_coding protein_coding MGP_AJ_T0094816.1 MGP_AJ_G0035300.1 mouse_genomes_project 9 106913959 106930828 + MGP_AJ_P0094816 Shisa5 protein_coding protein_coding MGP_AJ_T0094817.1 MGP_AJ_G0035300.1 mouse_genomes_project 9 106913976 106930828 + Shisa5 protein_coding retained_intron MGP_AJ_T0094818.1 MGP_AJ_G0035300.1 mouse_genomes_project 9 106915790 106929847 + MGP_AJ_P0094818 Shisa5 protein_coding protein_coding MGP_AJ_T0094819.1 MGP_AJ_G0035300.1 mouse_genomes_project 9 106915988 106924498 + MGP_AJ_P0094819 Shisa5 protein_coding protein_coding MGP_AJ_T0094820.1 MGP_AJ_G0035300.1 mouse_genomes_project 9 106924203 106930059 + MGP_AJ_P0094820 Shisa5 protein_coding protein_coding MGP_AJ_T0094821.1 MGP_AJ_G0035300.1 mouse_genomes_project 9 106924262 106929482 + MGP_AJ_P0094821 Shisa5 protein_coding protein_coding MGP_AJ_T0094822.1 MGP_AJ_G0035300.1 mouse_genomes_project 9 106924266 106930128 + MGP_AJ_P0094822 Shisa5 protein_coding protein_coding MGP_AJ_T0094823.1 MGP_AJ_G0035300.1 mouse_genomes_project 9 106924287 106929456 + MGP_AJ_P0094823 Shisa5 protein_coding protein_coding MGP_AJ_T0094824.1 MGP_AJ_G0035300.1 mouse_genomes_project 9 106924305 106930117 + MGP_AJ_P0094824 Shisa5 protein_coding protein_coding MGP_AJ_T0094825.1 MGP_AJ_G0035300.1 mouse_genomes_project 9 106924307 106929515 + MGP_AJ_P0094825 Shisa5 protein_coding protein_coding MGP_AJ_T0094826.1 MGP_AJ_G0035300.1 mouse_genomes_project 9 106924309 106929835 + MGP_AJ_P0094826 Shisa5 protein_coding protein_coding MGP_AJ_T0094827.1 MGP_AJ_G0035300.1 mouse_genomes_project 9 106924318 106929478 + MGP_AJ_P0094827 Shisa5 protein_coding protein_coding MGP_AJ_T0094828.1 MGP_AJ_G0035300.1 mouse_genomes_project 9 106924542 106929962 + MGP_AJ_P0094828 Shisa5 protein_coding protein_coding MGP_AJ_T0094829.1 MGP_AJ_G0035300.1 mouse_genomes_project 9 106925961 106929806 + Shisa5 protein_coding processed_transcript MGP_AJ_T0094830.1 MGP_AJ_G0035300.1 mouse_genomes_project 9 106927970 106930311 + MGP_AJ_P0094830 Shisa5 protein_coding protein_coding MGP_AJ_T0094831.1 MGP_AJ_G0035300.1 mouse_genomes_project 9 106928055 106929655 + Shisa5 protein_coding processed_transcript MGP_AJ_T0094832.1 MGP_AJ_G0035300.1 mouse_genomes_project 9 106928119 106929595 + Shisa5 protein_coding processed_transcript MGP_AJ_T0094833.1 MGP_AJ_G0035300.1 mouse_genomes_project 9 106929043 106929579 + Shisa5 protein_coding retained_intron MGP_AJ_T0009352.1 MGP_AJ_G0007510.1 mouse_genomes_project 9 116080085 116088160 + Gm26614 lincRNA lincRNA MGP_AJ_T0092113.1 MGP_AJ_G0034687.1 mouse_genomes_project 9 41685407 41690927 + MGP_AJ_P0092113 Slc37a4 protein_coding unknown_likely_coding MGP_AJ_T0091890.1 MGP_AJ_G0034574.1 mouse_genomes_project 9 35510797 35512908 + MGP_AJ_P0091890 Olfr147 protein_coding protein_coding MGP_AJ_T0016092.1 MGP_AJ_G0014187.1 mouse_genomes_project 9 72357247 72357554 + processed_pseudogene processed_pseudogene MGP_AJ_T0092940.1 MGP_AJ_G0034940.1 mouse_genomes_project 9 62998512 63025989 + MGP_AJ_P0092940 Spg21 protein_coding protein_coding MGP_AJ_T0093796.1 MGP_AJ_G0035127.1 mouse_genomes_project 9 94330148 94421386 - MGP_AJ_P0093796 Rasa2 protein_coding protein_coding MGP_AJ_T0093797.1 MGP_AJ_G0035127.1 mouse_genomes_project 9 94333153 94336028 - Rasa2 protein_coding retained_intron MGP_AJ_T0093798.1 MGP_AJ_G0035127.1 mouse_genomes_project 9 94337130 94421305 - MGP_AJ_P0093798 Rasa2 protein_coding nonsense_mediated_decay MGP_AJ_T0093799.1 MGP_AJ_G0035127.1 mouse_genomes_project 9 94347156 94362398 - Rasa2 protein_coding retained_intron MGP_AJ_T0093800.1 MGP_AJ_G0035127.1 mouse_genomes_project 9 94347862 94354441 - Rasa2 protein_coding retained_intron MGP_AJ_T0093801.1 MGP_AJ_G0035127.1 mouse_genomes_project 9 94362242 94370910 - Rasa2 protein_coding retained_intron MGP_AJ_T0016094.1 MGP_AJ_G0014189.1 mouse_genomes_project 9 72783174 72784397 - processed_pseudogene processed_pseudogene MGP_AJ_T0091896.1 MGP_AJ_G0034580.1 mouse_genomes_project 9 35614883 35615816 + MGP_AJ_P0091896 Olfr907 protein_coding protein_coding MGP_AJ_T0016090.1 MGP_AJ_G0014185.1 mouse_genomes_project 9 72025643 72026121 - processed_pseudogene processed_pseudogene MGP_AJ_T0095380.1 MGP_AJ_G0035430.1 mouse_genomes_project 9 119983735 119989870 + MGP_AJ_P0095380 Klhl40 protein_coding protein_coding MGP_AJ_T0002435.1 MGP_AJ_G0002344.1 mouse_genomes_project 9 99028083 99030779 - TEC TEC MGP_AJ_T0016119.1 MGP_AJ_G0014214.1 mouse_genomes_project 9 85161528 85162006 + processed_pseudogene processed_pseudogene MGP_AJ_T0002418.1 MGP_AJ_G0002327.1 mouse_genomes_project 9 93813897 93816124 + TEC TEC MGP_AJ_T0016166.1 MGP_AJ_G0014261.1 mouse_genomes_project 9 101735763 101736157 + processed_pseudogene processed_pseudogene MGP_AJ_T0095383.1 MGP_AJ_G0035432.1 mouse_genomes_project 9 120003672 120046841 - MGP_AJ_P0095383 Ccdc13 protein_coding protein_coding MGP_AJ_T0095384.1 MGP_AJ_G0035432.1 mouse_genomes_project 9 120003678 120016507 - MGP_AJ_P0095384 Ccdc13 protein_coding nonsense_mediated_decay MGP_AJ_T0095385.1 MGP_AJ_G0035432.1 mouse_genomes_project 9 120004213 120016653 - Ccdc13 protein_coding retained_intron MGP_AJ_T0095386.1 MGP_AJ_G0035432.1 mouse_genomes_project 9 120004931 120016489 - MGP_AJ_P0095386 Ccdc13 protein_coding protein_coding MGP_AJ_T0095387.1 MGP_AJ_G0035432.1 mouse_genomes_project 9 120005442 120016592 - Ccdc13 protein_coding retained_intron MGP_AJ_T0095388.1 MGP_AJ_G0035432.1 mouse_genomes_project 9 120023724 120037383 - Ccdc13 protein_coding retained_intron MGP_AJ_T0091377.1 MGP_AJ_G0034379.1 mouse_genomes_project 9 16607050 16608044 + MGP_AJ_P0091377 Olfr857 protein_coding protein_coding MGP_AJ_T0094023.1 MGP_AJ_G0035177.1 mouse_genomes_project 9 101089997 101127802 - MGP_AJ_P0094023 1300017J02Rik protein_coding protein_coding MGP_AJ_T0094024.1 MGP_AJ_G0035177.1 mouse_genomes_project 9 101089998 101096188 - 1300017J02Rik protein_coding retained_intron MGP_AJ_T0094025.1 MGP_AJ_G0035177.1 mouse_genomes_project 9 101090100 101127729 - MGP_AJ_P0094025 1300017J02Rik protein_coding protein_coding MGP_AJ_T0094026.1 MGP_AJ_G0035177.1 mouse_genomes_project 9 101091313 101105630 - MGP_AJ_P0094026 1300017J02Rik protein_coding protein_coding MGP_AJ_T0094027.1 MGP_AJ_G0035177.1 mouse_genomes_project 9 101110207 101127802 - 1300017J02Rik protein_coding processed_transcript MGP_AJ_T0094028.1 MGP_AJ_G0035177.1 mouse_genomes_project 9 101122494 101142954 - MGP_AJ_P0094028 1300017J02Rik protein_coding protein_coding MGP_AJ_T0009248.1 MGP_AJ_G0007430.1 mouse_genomes_project 9 50632042 50649574 + 4930510E17Rik lincRNA lincRNA MGP_AJ_T0092960.1 MGP_AJ_G0034946.1 mouse_genomes_project 9 63241734 63379320 - MGP_AJ_P0092960 Zfp609 protein_coding protein_coding MGP_AJ_T0092961.1 MGP_AJ_G0034946.1 mouse_genomes_project 9 63249209 63250475 - Zfp609 protein_coding processed_transcript MGP_AJ_T0092962.1 MGP_AJ_G0034946.1 mouse_genomes_project 9 63344895 63348440 - MGP_AJ_P0092962 Zfp609 protein_coding protein_coding MGP_AJ_T0009330.1 MGP_AJ_G0007496.1 mouse_genomes_project 9 102214324 102238114 + Gm28548 lincRNA lincRNA MGP_AJ_T0092532.1 MGP_AJ_G0034822.1 mouse_genomes_project 9 52667545 52779229 + MGP_AJ_P0092532 Tmem266 protein_coding protein_coding MGP_AJ_T0092533.1 MGP_AJ_G0034822.1 mouse_genomes_project 9 52667579 52779229 + MGP_AJ_P0092533 Tmem266 protein_coding protein_coding MGP_AJ_T0092534.1 MGP_AJ_G0034822.1 mouse_genomes_project 9 52673831 52778242 + Tmem266 protein_coding processed_transcript MGP_AJ_T0011056.1 MGP_AJ_G0009178.1 mouse_genomes_project 9 41629414 41629555 - Gm44335 miRNA miRNA MGP_AJ_T0095389.1 MGP_AJ_G0035433.1 mouse_genomes_project 9 120055902 120066354 - MGP_AJ_P0095389 Higd1a protein_coding protein_coding MGP_AJ_T0101550.1 MGP_AJ_G0039516.1 mouse_genomes_project 9 34208430 34208545 - Gm25273 snoRNA snoRNA MGP_AJ_T0016146.1 MGP_AJ_G0014241.1 mouse_genomes_project 9 94328009 94328703 + processed_pseudogene processed_pseudogene MGP_AJ_T0011109.1 MGP_AJ_G0009231.1 mouse_genomes_project 9 120875679 120875778 + Mir138-1 miRNA miRNA MGP_AJ_T0009311.1 MGP_AJ_G0007479.1 mouse_genomes_project 9 92443762 92445373 - Gm29395 lincRNA lincRNA MGP_AJ_T0095427.1 MGP_AJ_G0035451.1 mouse_genomes_project 9 121228747 121229840 + Tgm4 protein_coding processed_transcript MGP_AJ_T0095428.1 MGP_AJ_G0035451.1 mouse_genomes_project 9 121228749 121245575 + Tgm4 protein_coding processed_transcript MGP_AJ_T0095429.1 MGP_AJ_G0035451.1 mouse_genomes_project 9 121228749 121261604 + MGP_AJ_P0095429 Tgm4 protein_coding protein_coding MGP_AJ_T0095430.1 MGP_AJ_G0035451.1 mouse_genomes_project 9 121234418 121243157 + Tgm4 protein_coding retained_intron MGP_AJ_T0016088.1 MGP_AJ_G0014183.1 mouse_genomes_project 9 70706928 70707235 + processed_pseudogene processed_pseudogene MGP_AJ_T0005489.1 MGP_AJ_G0004638.1 mouse_genomes_project 9 84483589 84489372 + A330041J22Rik antisense antisense MGP_AJ_T0101575.1 MGP_AJ_G0039541.1 mouse_genomes_project 9 74417712 74417832 - Gm22938 snoRNA snoRNA MGP_AJ_T0091700.1 MGP_AJ_G0034503.1 mouse_genomes_project 9 29394880 29518487 - MGP_AJ_P0091700 Fli1 protein_coding protein_coding MGP_AJ_T0091701.1 MGP_AJ_G0034503.1 mouse_genomes_project 9 29400735 29519749 - MGP_AJ_P0091701 Fli1 protein_coding protein_coding MGP_AJ_T0101554.1 MGP_AJ_G0039520.1 mouse_genomes_project 9 38043313 38043399 + Snord14d snoRNA snoRNA MGP_AJ_T0100305.1 MGP_AJ_G0038271.1 mouse_genomes_project 9 103543679 103543766 - Gm22720 snRNA snRNA MGP_AJ_T0101538.1 MGP_AJ_G0039504.1 mouse_genomes_project 9 12232002 12232135 + snoRNA snoRNA MGP_AJ_T0002459.1 MGP_AJ_G0002368.1 mouse_genomes_project 9 106381456 106382471 + TEC TEC MGP_AJ_T0091891.1 MGP_AJ_G0034575.1 mouse_genomes_project 9 35535631 35536567 + MGP_AJ_P0091891 Olfr901 protein_coding protein_coding MGP_AJ_T0009211.1 MGP_AJ_G0007398.1 mouse_genomes_project 9 10123339 10123742 - Gm29176 lincRNA lincRNA MGP_AJ_T0095475.1 MGP_AJ_G0035464.1 mouse_genomes_project 9 121996219 122059065 - MGP_AJ_P0095475 Fyco1 protein_coding protein_coding MGP_AJ_T0095476.1 MGP_AJ_G0035464.1 mouse_genomes_project 9 121996595 122058732 - MGP_AJ_P0095476 Fyco1 protein_coding protein_coding MGP_AJ_T0095478.1 MGP_AJ_G0035464.1 mouse_genomes_project 9 122036906 122059047 - MGP_AJ_P0095478 Fyco1 protein_coding protein_coding MGP_AJ_T0095479.1 MGP_AJ_G0035464.1 mouse_genomes_project 9 122045084 122059052 - Fyco1 protein_coding retained_intron MGP_AJ_T0100303.1 MGP_AJ_G0038269.1 mouse_genomes_project 9 100204504 100204607 + Gm22894 snRNA snRNA MGP_AJ_T0092798.1 MGP_AJ_G0034896.1 mouse_genomes_project 9 59413903 59443056 - MGP_AJ_P0092798 Kif23 protein_coding protein_coding MGP_AJ_T0092799.1 MGP_AJ_G0034896.1 mouse_genomes_project 9 59414284 59442879 - MGP_AJ_P0092799 Kif23 protein_coding unknown_likely_coding MGP_AJ_T0091416.1 MGP_AJ_G0034400.1 mouse_genomes_project 9 17483405 17505056 - MGP_AJ_P0091416 Fbxl12 protein_coding protein_coding MGP_AJ_T0091417.1 MGP_AJ_G0034400.1 mouse_genomes_project 9 17483517 17507490 - Fbxl12 protein_coding processed_transcript MGP_AJ_T0091418.1 MGP_AJ_G0034400.1 mouse_genomes_project 9 17500410 17507498 - MGP_AJ_P0091418 Fbxl12 protein_coding protein_coding MGP_AJ_T0091419.1 MGP_AJ_G0034400.1 mouse_genomes_project 9 17500447 17502002 - MGP_AJ_P0091419 Fbxl12 protein_coding protein_coding MGP_AJ_T0091420.1 MGP_AJ_G0034400.1 mouse_genomes_project 9 17500447 17507490 - MGP_AJ_P0091420 Fbxl12 protein_coding protein_coding MGP_AJ_T0091421.1 MGP_AJ_G0034400.1 mouse_genomes_project 9 17500448 17507498 - MGP_AJ_P0091421 Fbxl12 protein_coding protein_coding MGP_AJ_T0091422.1 MGP_AJ_G0034400.1 mouse_genomes_project 9 17500450 17507510 - MGP_AJ_P0091422 Fbxl12 protein_coding protein_coding MGP_AJ_T0091423.1 MGP_AJ_G0034400.1 mouse_genomes_project 9 17500450 17505549 - MGP_AJ_P0091423 Fbxl12 protein_coding protein_coding MGP_AJ_T0091424.1 MGP_AJ_G0034400.1 mouse_genomes_project 9 17501462 17507501 - MGP_AJ_P0091424 Fbxl12 protein_coding protein_coding MGP_AJ_T0091425.1 MGP_AJ_G0034400.1 mouse_genomes_project 9 17504305 17507485 - Fbxl12 protein_coding retained_intron MGP_AJ_T0095284.1 MGP_AJ_G0035401.1 mouse_genomes_project 9 117667148 117687513 + MGP_AJ_P0095284 Exog protein_coding protein_coding MGP_AJ_T0095285.1 MGP_AJ_G0035401.1 mouse_genomes_project 9 117667176 117686226 + MGP_AJ_P0095285 Exog protein_coding protein_coding MGP_AJ_T0093420.1 MGP_AJ_G0035048.1 mouse_genomes_project 9 76156708 76159333 - MGP_AJ_P0093420 Ooep protein_coding protein_coding MGP_AJ_T0016140.1 MGP_AJ_G0014235.1 mouse_genomes_project 9 92204431 92204777 + processed_pseudogene processed_pseudogene MGP_AJ_T0005446.1 MGP_AJ_G0004609.1 mouse_genomes_project 9 51040005 51054021 + Gm16124 antisense antisense MGP_AJ_T0092316.1 MGP_AJ_G0034754.1 mouse_genomes_project 9 46826938 46877045 - MGP_AJ_P0092316 Ttc12 protein_coding protein_coding MGP_AJ_T0092317.1 MGP_AJ_G0034754.1 mouse_genomes_project 9 46848501 46877035 - Ttc12 protein_coding retained_intron MGP_AJ_T0091311.1 MGP_AJ_G0034343.1 mouse_genomes_project 9 12232241 12273236 - MGP_AJ_P0091311 Cep295 protein_coding protein_coding MGP_AJ_T0091312.1 MGP_AJ_G0034343.1 mouse_genomes_project 9 12232241 12248720 - MGP_AJ_P0091312 Cep295 protein_coding protein_coding MGP_AJ_T0091313.1 MGP_AJ_G0034343.1 mouse_genomes_project 9 12232243 12248827 - Cep295 protein_coding retained_intron MGP_AJ_T0091314.1 MGP_AJ_G0034343.1 mouse_genomes_project 9 12232246 12256420 - Cep295 protein_coding retained_intron MGP_AJ_T0091315.1 MGP_AJ_G0034343.1 mouse_genomes_project 9 12232246 12273236 - MGP_AJ_P0091315 Cep295 protein_coding protein_coding MGP_AJ_T0091316.1 MGP_AJ_G0034343.1 mouse_genomes_project 9 12232423 12270158 - MGP_AJ_P0091316 Cep295 protein_coding protein_coding MGP_AJ_T0091317.1 MGP_AJ_G0034343.1 mouse_genomes_project 9 12232599 12233284 - Cep295 protein_coding retained_intron MGP_AJ_T0091318.1 MGP_AJ_G0034343.1 mouse_genomes_project 9 12238325 12241507 - MGP_AJ_P0091318 Cep295 protein_coding protein_coding MGP_AJ_T0091319.1 MGP_AJ_G0034343.1 mouse_genomes_project 9 12240869 12247306 - MGP_AJ_P0091319 Cep295 protein_coding protein_coding MGP_AJ_T0091320.1 MGP_AJ_G0034343.1 mouse_genomes_project 9 12240932 12242404 - Cep295 protein_coding retained_intron MGP_AJ_T0091321.1 MGP_AJ_G0034343.1 mouse_genomes_project 9 12258876 12266352 - Cep295 protein_coding processed_transcript MGP_AJ_T0091322.1 MGP_AJ_G0034343.1 mouse_genomes_project 9 12260065 12266882 - Cep295 protein_coding retained_intron MGP_AJ_T0091323.1 MGP_AJ_G0034343.1 mouse_genomes_project 9 12261987 12267263 - Cep295 protein_coding retained_intron MGP_AJ_T0002367.1 MGP_AJ_G0002277.1 mouse_genomes_project 9 69615770 69618196 - TEC TEC MGP_AJ_T0092328.1 MGP_AJ_G0034759.1 mouse_genomes_project 9 47914210 47937881 - MGP_AJ_P0092328 Bco2 protein_coding protein_coding MGP_AJ_T0092329.1 MGP_AJ_G0034759.1 mouse_genomes_project 9 47923755 47936148 - MGP_AJ_P0092329 Bco2 protein_coding unknown_likely_coding MGP_AJ_T0091193.1 MGP_AJ_G0034306.1 mouse_genomes_project 9 4732717 4763694 + MGP_AJ_P0091193 Tmem123 protein_coding protein_coding MGP_AJ_T0091194.1 MGP_AJ_G0034306.1 mouse_genomes_project 9 4732825 4760409 + MGP_AJ_P0091194 Tmem123 protein_coding nonsense_mediated_decay MGP_AJ_T0091195.1 MGP_AJ_G0034306.1 mouse_genomes_project 9 4732841 4763689 + MGP_AJ_P0091195 Tmem123 protein_coding nonsense_mediated_decay MGP_AJ_T0005524.1 MGP_AJ_G0004662.1 mouse_genomes_project 9 104348710 104349448 - Gm28959 antisense antisense MGP_AJ_T0016061.1 MGP_AJ_G0014156.1 mouse_genomes_project 9 34733444 34735124 + processed_pseudogene processed_pseudogene MGP_AJ_T0091876.1 MGP_AJ_G0034560.1 mouse_genomes_project 9 35149123 35150053 + MGP_AJ_P0091876 Olfr885 protein_coding protein_coding MGP_AJ_T0011048.1 MGP_AJ_G0009170.1 mouse_genomes_project 9 25218252 25218349 + Gm44316 miRNA miRNA MGP_AJ_T0005562.1 MGP_AJ_G0004691.1 mouse_genomes_project 9 121841832 121843770 + Gm17120 antisense antisense MGP_AJ_T0101556.1 MGP_AJ_G0039522.1 mouse_genomes_project 9 41683752 41683871 - Gm26306 snoRNA snoRNA MGP_AJ_T0091239.1 MGP_AJ_G0034321.1 mouse_genomes_project 9 10315431 10316819 + MGP_AJ_P0091239 Phxr4 protein_coding protein_coding MGP_AJ_T0091923.1 MGP_AJ_G0034601.1 mouse_genomes_project 9 36147175 36148555 - MGP_AJ_P0091923 Olfr935 protein_coding protein_coding MGP_AJ_T0016153.1 MGP_AJ_G0014248.1 mouse_genomes_project 9 96725716 96726151 - processed_pseudogene processed_pseudogene MGP_AJ_T0092206.1 MGP_AJ_G0034718.1 mouse_genomes_project 9 42703866 42730039 + MGP_AJ_P0092206 Fxyd6 protein_coding protein_coding MGP_AJ_T0005525.1 MGP_AJ_G0004663.1 mouse_genomes_project 9 104526347 104528977 + Gm28111 antisense antisense MGP_AJ_T0098493.1 MGP_AJ_G0036477.1 mouse_genomes_project 9 36890561 36891464 - pseudogene pseudogene MGP_AJ_T0091916.1 MGP_AJ_G0034594.1 mouse_genomes_project 9 35975660 35976728 + MGP_AJ_P0091916 Olfr923 protein_coding protein_coding MGP_AJ_T0091176.1 MGP_AJ_G0034297.1 mouse_genomes_project 9 4286568 4291973 + MGP_AJ_P0091176 Mmp12 protein_coding protein_coding MGP_AJ_T0091177.1 MGP_AJ_G0034297.1 mouse_genomes_project 9 4289559 4311154 + MGP_AJ_P0091177 Mmp12 protein_coding protein_coding MGP_AJ_T0091178.1 MGP_AJ_G0034297.1 mouse_genomes_project 9 4289559 4302116 + MGP_AJ_P0091178 Mmp12 protein_coding protein_coding MGP_AJ_T0091179.1 MGP_AJ_G0034297.1 mouse_genomes_project 9 4289591 4299318 + Mmp12 protein_coding retained_intron MGP_AJ_T0091180.1 MGP_AJ_G0034297.1 mouse_genomes_project 9 4289591 4290519 + Mmp12 protein_coding processed_transcript MGP_AJ_T0091181.1 MGP_AJ_G0034297.1 mouse_genomes_project 9 4289591 4300543 + MGP_AJ_P0091181 Mmp12 protein_coding nonsense_mediated_decay MGP_AJ_T0091182.1 MGP_AJ_G0034297.1 mouse_genomes_project 9 4289700 4300347 + MGP_AJ_P0091182 Mmp12 protein_coding protein_coding MGP_AJ_T0094048.1 MGP_AJ_G0035182.1 mouse_genomes_project 9 101852316 101890443 + Nphp3 protein_coding retained_intron MGP_AJ_T0094049.1 MGP_AJ_G0035182.1 mouse_genomes_project 9 101852318 101894578 + MGP_AJ_P0094049 Nphp3 protein_coding protein_coding MGP_AJ_T0094050.1 MGP_AJ_G0035182.1 mouse_genomes_project 9 101852426 101893869 + MGP_AJ_P0094050 Nphp3 protein_coding protein_coding MGP_AJ_T0094051.1 MGP_AJ_G0035182.1 mouse_genomes_project 9 101852426 102006313 + MGP_AJ_P0094051 Nphp3 protein_coding nonsense_mediated_decay MGP_AJ_T0094052.1 MGP_AJ_G0035182.1 mouse_genomes_project 9 101852530 101866533 + Nphp3 protein_coding retained_intron MGP_AJ_T0094053.1 MGP_AJ_G0035182.1 mouse_genomes_project 9 101852539 101893083 + MGP_AJ_P0094053 Nphp3 protein_coding nonsense_mediated_decay MGP_AJ_T0094054.1 MGP_AJ_G0035182.1 mouse_genomes_project 9 101882574 101885129 + Nphp3 protein_coding retained_intron MGP_AJ_T0094055.1 MGP_AJ_G0035182.1 mouse_genomes_project 9 101886554 101889248 + MGP_AJ_P0094055 Nphp3 protein_coding protein_coding MGP_AJ_T0091871.1 MGP_AJ_G0034556.1 mouse_genomes_project 9 34999072 35000137 + MGP_AJ_P0091871 Olfr878 protein_coding protein_coding MGP_AJ_T0093572.1 MGP_AJ_G0035077.1 mouse_genomes_project 9 84339258 84356696 - MGP_AJ_P0093572 Pgm3 protein_coding protein_coding MGP_AJ_T0093573.1 MGP_AJ_G0035077.1 mouse_genomes_project 9 84339882 84356697 - MGP_AJ_P0093573 Pgm3 protein_coding protein_coding MGP_AJ_T0093574.1 MGP_AJ_G0035077.1 mouse_genomes_project 9 84340137 84342822 - Pgm3 protein_coding retained_intron MGP_AJ_T0093575.1 MGP_AJ_G0035077.1 mouse_genomes_project 9 84340562 84356662 - Pgm3 protein_coding retained_intron MGP_AJ_T0093576.1 MGP_AJ_G0035077.1 mouse_genomes_project 9 84341404 84356711 - Pgm3 protein_coding retained_intron MGP_AJ_T0091393.1 MGP_AJ_G0034395.1 mouse_genomes_project 9 17206886 17239718 - MGP_AJ_P0091393 Zfp560 protein_coding protein_coding MGP_AJ_T0091394.1 MGP_AJ_G0034395.1 mouse_genomes_project 9 17214272 17239718 - Zfp560 protein_coding retained_intron MGP_AJ_T0092367.1 MGP_AJ_G0034769.1 mouse_genomes_project 9 48138296 48139578 - MGP_AJ_P0092367 Hspb2 protein_coding protein_coding MGP_AJ_T0092968.1 MGP_AJ_G0034948.1 mouse_genomes_project 9 63443678 63456442 + MGP_AJ_P0092968 2810417H13Rik protein_coding protein_coding MGP_AJ_T0092969.1 MGP_AJ_G0034948.1 mouse_genomes_project 9 63443761 63447299 + 2810417H13Rik protein_coding retained_intron MGP_AJ_T0092970.1 MGP_AJ_G0034948.1 mouse_genomes_project 9 63443803 63446627 + 2810417H13Rik protein_coding retained_intron MGP_AJ_T0094625.1 MGP_AJ_G0035275.1 mouse_genomes_project 9 106314282 106339214 - MGP_AJ_P0094625 Ccdc36 protein_coding protein_coding MGP_AJ_T0002357.1 MGP_AJ_G0002267.1 mouse_genomes_project 9 32309041 32310194 - TEC TEC MGP_AJ_T0016176.1 MGP_AJ_G0014271.1 mouse_genomes_project 9 107511955 107513168 - processed_pseudogene processed_pseudogene MGP_AJ_T0092263.1 MGP_AJ_G0034733.1 mouse_genomes_project 9 43619806 43628297 + MGP_AJ_P0092263 Zpr1 protein_coding protein_coding MGP_AJ_T0092264.1 MGP_AJ_G0034733.1 mouse_genomes_project 9 43619806 43629456 + MGP_AJ_P0092264 Zpr1 protein_coding protein_coding MGP_AJ_T0092265.1 MGP_AJ_G0034733.1 mouse_genomes_project 9 43619898 43622399 + MGP_AJ_P0092265 Zpr1 protein_coding nonsense_mediated_decay MGP_AJ_T0092266.1 MGP_AJ_G0034733.1 mouse_genomes_project 9 43620241 43623347 + Zpr1 protein_coding retained_intron MGP_AJ_T0092267.1 MGP_AJ_G0034733.1 mouse_genomes_project 9 43622066 43623219 + Zpr1 protein_coding retained_intron MGP_AJ_T0092268.1 MGP_AJ_G0034733.1 mouse_genomes_project 9 43622743 43624266 + Zpr1 protein_coding retained_intron MGP_AJ_T0016145.1 MGP_AJ_G0014240.1 mouse_genomes_project 9 94051201 94051442 - processed_pseudogene processed_pseudogene MGP_AJ_T0092679.1 MGP_AJ_G0034868.1 mouse_genomes_project 9 55628215 55661343 - MGP_AJ_P0092679 Pml protein_coding protein_coding MGP_AJ_T0092680.1 MGP_AJ_G0034868.1 mouse_genomes_project 9 55628215 55661343 - MGP_AJ_P0092680 Pml protein_coding protein_coding MGP_AJ_T0092681.1 MGP_AJ_G0034868.1 mouse_genomes_project 9 55628225 55661290 - MGP_AJ_P0092681 Pml protein_coding protein_coding MGP_AJ_T0092682.1 MGP_AJ_G0034868.1 mouse_genomes_project 9 55628226 55661222 - MGP_AJ_P0092682 Pml protein_coding protein_coding MGP_AJ_T0092683.1 MGP_AJ_G0034868.1 mouse_genomes_project 9 55628681 55643738 - Pml protein_coding retained_intron MGP_AJ_T0092684.1 MGP_AJ_G0034868.1 mouse_genomes_project 9 55629890 55661217 - MGP_AJ_P0092684 Pml protein_coding protein_coding MGP_AJ_T0092685.1 MGP_AJ_G0034868.1 mouse_genomes_project 9 55630402 55640461 - Pml protein_coding processed_transcript MGP_AJ_T0092686.1 MGP_AJ_G0034868.1 mouse_genomes_project 9 55631229 55661343 - MGP_AJ_P0092686 Pml protein_coding protein_coding MGP_AJ_T0092687.1 MGP_AJ_G0034868.1 mouse_genomes_project 9 55640181 55661343 - MGP_AJ_P0092687 Pml protein_coding nonsense_mediated_decay MGP_AJ_T0092688.1 MGP_AJ_G0034868.1 mouse_genomes_project 9 55640724 55643748 - Pml protein_coding retained_intron MGP_AJ_T0092689.1 MGP_AJ_G0034868.1 mouse_genomes_project 9 55658593 55661180 - MGP_AJ_P0092689 Pml protein_coding nonsense_mediated_decay MGP_AJ_T0092690.1 MGP_AJ_G0034868.1 mouse_genomes_project 9 55658638 55661343 - MGP_AJ_P0092690 Pml protein_coding protein_coding MGP_AJ_T0002427.1 MGP_AJ_G0002336.1 mouse_genomes_project 9 98001363 98002512 - TEC TEC MGP_AJ_T0016164.1 MGP_AJ_G0014259.1 mouse_genomes_project 9 100385326 100385527 + processed_pseudogene processed_pseudogene MGP_AJ_T0093604.1 MGP_AJ_G0035085.1 mouse_genomes_project 9 84960387 85024890 - MGP_AJ_P0093604 Cep162 protein_coding protein_coding MGP_AJ_T0093605.1 MGP_AJ_G0035085.1 mouse_genomes_project 9 84974829 84980464 - Cep162 protein_coding processed_transcript MGP_AJ_T0093606.1 MGP_AJ_G0035085.1 mouse_genomes_project 9 84995952 84998949 - Cep162 protein_coding retained_intron MGP_AJ_T0093607.1 MGP_AJ_G0035085.1 mouse_genomes_project 9 84996710 85024642 - Cep162 protein_coding retained_intron MGP_AJ_T0092089.1 MGP_AJ_G0034679.1 mouse_genomes_project 9 41563654 41569079 - Abcg4 protein_coding retained_intron MGP_AJ_T0092090.1 MGP_AJ_G0034679.1 mouse_genomes_project 9 41563654 41579685 - MGP_AJ_P0092090 Abcg4 protein_coding protein_coding MGP_AJ_T0092091.1 MGP_AJ_G0034679.1 mouse_genomes_project 9 41563656 41580753 - MGP_AJ_P0092091 Abcg4 protein_coding protein_coding MGP_AJ_T0092092.1 MGP_AJ_G0034679.1 mouse_genomes_project 9 41564918 41570303 - Abcg4 protein_coding retained_intron MGP_AJ_T0092093.1 MGP_AJ_G0034679.1 mouse_genomes_project 9 41565561 41570065 - MGP_AJ_P0092093 Abcg4 protein_coding nonsense_mediated_decay MGP_AJ_T0092094.1 MGP_AJ_G0034679.1 mouse_genomes_project 9 41567535 41579677 - Abcg4 protein_coding processed_transcript MGP_AJ_T0092095.1 MGP_AJ_G0034679.1 mouse_genomes_project 9 41567967 41570256 - Abcg4 protein_coding retained_intron MGP_AJ_T0092096.1 MGP_AJ_G0034679.1 mouse_genomes_project 9 41571112 41572123 - Abcg4 protein_coding retained_intron MGP_AJ_T0092097.1 MGP_AJ_G0034679.1 mouse_genomes_project 9 41572310 41580495 - MGP_AJ_P0092097 Abcg4 protein_coding protein_coding MGP_AJ_T0092098.1 MGP_AJ_G0034679.1 mouse_genomes_project 9 41572373 41580276 - MGP_AJ_P0092098 Abcg4 protein_coding protein_coding MGP_AJ_T0100280.1 MGP_AJ_G0038246.1 mouse_genomes_project 9 64548864 64548962 - Gm24225 snRNA snRNA MGP_AJ_T0002384.1 MGP_AJ_G0002294.1 mouse_genomes_project 9 70778403 70780636 + TEC TEC MGP_AJ_T0092247.1 MGP_AJ_G0034727.1 mouse_genomes_project 9 43310448 43329984 - MGP_AJ_P0092247 Pafah1b2 protein_coding protein_coding MGP_AJ_T0091324.1 MGP_AJ_G0034344.1 mouse_genomes_project 9 12423316 12462984 + MGP_AJ_P0091324 Smco4 protein_coding protein_coding MGP_AJ_T0091325.1 MGP_AJ_G0034344.1 mouse_genomes_project 9 12438545 12462981 + MGP_AJ_P0091325 Smco4 protein_coding protein_coding MGP_AJ_T0005440.1 MGP_AJ_G0004607.1 mouse_genomes_project 9 48675427 48681126 + 2010007H06Rik antisense antisense MGP_AJ_T0005441.1 MGP_AJ_G0004607.1 mouse_genomes_project 9 48677209 48677835 + 2010007H06Rik antisense antisense MGP_AJ_T0092729.1 MGP_AJ_G0034883.1 mouse_genomes_project 9 57041558 57071292 + MGP_AJ_P0092729 Celf6 protein_coding nonsense_mediated_decay MGP_AJ_T0092730.1 MGP_AJ_G0034883.1 mouse_genomes_project 9 57041833 57071292 + MGP_AJ_P0092730 Celf6 protein_coding protein_coding MGP_AJ_T0092731.1 MGP_AJ_G0034883.1 mouse_genomes_project 9 57041833 57071292 + MGP_AJ_P0092731 Celf6 protein_coding nonsense_mediated_decay MGP_AJ_T0092732.1 MGP_AJ_G0034883.1 mouse_genomes_project 9 57042019 57071297 + MGP_AJ_P0092732 Celf6 protein_coding protein_coding MGP_AJ_T0092733.1 MGP_AJ_G0034883.1 mouse_genomes_project 9 57066578 57067332 + Celf6 protein_coding retained_intron MGP_AJ_T0092734.1 MGP_AJ_G0034883.1 mouse_genomes_project 9 57067953 57070045 + Celf6 protein_coding retained_intron MGP_AJ_T0093705.1 MGP_AJ_G0035107.1 mouse_genomes_project 9 90070626 90093572 + MGP_AJ_P0093705 Plscr1 protein_coding protein_coding MGP_AJ_T0093706.1 MGP_AJ_G0035107.1 mouse_genomes_project 9 90071097 90093867 + MGP_AJ_P0093706 Plscr1 protein_coding unknown_likely_coding MGP_AJ_T0011103.1 MGP_AJ_G0009225.1 mouse_genomes_project 9 110181512 110181588 - Mir128-2 miRNA miRNA MGP_AJ_T0095460.1 MGP_AJ_G0035461.1 mouse_genomes_project 9 121842566 121887627 - MGP_AJ_P0095460 Slc6a20a protein_coding protein_coding MGP_AJ_T0095461.1 MGP_AJ_G0035461.1 mouse_genomes_project 9 121843440 121887548 - MGP_AJ_P0095461 Slc6a20a protein_coding protein_coding MGP_AJ_T0095462.1 MGP_AJ_G0035461.1 mouse_genomes_project 9 121863639 121887524 - MGP_AJ_P0095462 Slc6a20a protein_coding protein_coding MGP_AJ_T0094857.1 MGP_AJ_G0035307.1 mouse_genomes_project 9 107017591 107055632 - MGP_AJ_P0094857 Fbxw21 protein_coding protein_coding MGP_AJ_T0094858.1 MGP_AJ_G0035307.1 mouse_genomes_project 9 107024582 107055631 - MGP_AJ_P0094858 Fbxw21 protein_coding protein_coding MGP_AJ_T0094895.1 MGP_AJ_G0035319.1 mouse_genomes_project 9 107896184 107898890 - MGP_AJ_P0094895 Camp protein_coding protein_coding MGP_AJ_T0092145.1 MGP_AJ_G0034698.1 mouse_genomes_project 9 42047373 42077901 - MGP_AJ_P0092145 Arcn1 protein_coding protein_coding MGP_AJ_T0092146.1 MGP_AJ_G0034698.1 mouse_genomes_project 9 42064689 42077854 - Arcn1 protein_coding retained_intron MGP_AJ_T0092147.1 MGP_AJ_G0034698.1 mouse_genomes_project 9 42065676 42070057 - Arcn1 protein_coding processed_transcript MGP_AJ_T0002360.1 MGP_AJ_G0002270.1 mouse_genomes_project 9 53758027 53760061 - TEC TEC MGP_AJ_T0091966.1 MGP_AJ_G0034638.1 mouse_genomes_project 9 37213521 37214518 + MGP_AJ_P0091966 Olfr981 protein_coding protein_coding MGP_AJ_T0093333.1 MGP_AJ_G0035023.1 mouse_genomes_project 9 73237513 73284362 - MGP_AJ_P0093333 Tmod2 protein_coding protein_coding MGP_AJ_T0093334.1 MGP_AJ_G0035023.1 mouse_genomes_project 9 73237513 73271863 - MGP_AJ_P0093334 Tmod2 protein_coding protein_coding MGP_AJ_T0093335.1 MGP_AJ_G0035023.1 mouse_genomes_project 9 73245598 73270381 - MGP_AJ_P0093335 Tmod2 protein_coding protein_coding MGP_AJ_T0095499.1 MGP_AJ_G0035473.1 mouse_genomes_project 9 122641799 122646998 + MGP_AJ_P0095499 Nlrp4g protein_coding protein_coding MGP_AJ_T0094839.1 MGP_AJ_G0035303.1 mouse_genomes_project 9 106932850 106947243 - MGP_AJ_P0094839 Atrip protein_coding protein_coding MGP_AJ_T0094840.1 MGP_AJ_G0035303.1 mouse_genomes_project 9 106932888 106947171 - MGP_AJ_P0094840 Atrip protein_coding protein_coding MGP_AJ_T0094841.1 MGP_AJ_G0035303.1 mouse_genomes_project 9 106932913 106935393 - Atrip protein_coding retained_intron MGP_AJ_T0094842.1 MGP_AJ_G0035303.1 mouse_genomes_project 9 106933764 106938497 - MGP_AJ_P0094842 Atrip protein_coding protein_coding MGP_AJ_T0094843.1 MGP_AJ_G0035303.1 mouse_genomes_project 9 106940579 106942633 - Atrip protein_coding retained_intron MGP_AJ_T0094844.1 MGP_AJ_G0035303.1 mouse_genomes_project 9 106944857 106947185 - Atrip protein_coding retained_intron MGP_AJ_T0002393.1 MGP_AJ_G0002303.1 mouse_genomes_project 9 80868999 80871804 + TEC TEC MGP_AJ_T0009304.1 MGP_AJ_G0007476.1 mouse_genomes_project 9 90519173 90548556 + lincRNA lincRNA MGP_AJ_T0009305.1 MGP_AJ_G0007476.1 mouse_genomes_project 9 90520433 90595236 + lincRNA lincRNA MGP_AJ_T0095185.1 MGP_AJ_G0035375.1 mouse_genomes_project 9 112956320 113014034 - MGP_AJ_P0095185 Cmtm8 protein_coding unknown_likely_coding MGP_AJ_T0100306.1 MGP_AJ_G0038272.1 mouse_genomes_project 9 103885156 103885233 + Gm24631 snRNA snRNA MGP_AJ_T0009230.1 MGP_AJ_G0007417.1 mouse_genomes_project 9 32867190 32885736 + lincRNA lincRNA MGP_AJ_T0009231.1 MGP_AJ_G0007417.1 mouse_genomes_project 9 32867748 32884494 + lincRNA lincRNA MGP_AJ_T0095005.1 MGP_AJ_G0035333.1 mouse_genomes_project 9 108685193 108714574 - MGP_AJ_P0095005 Nbeal2 protein_coding protein_coding MGP_AJ_T0095006.1 MGP_AJ_G0035333.1 mouse_genomes_project 9 108685193 108714574 - MGP_AJ_P0095006 Nbeal2 protein_coding protein_coding MGP_AJ_T0095007.1 MGP_AJ_G0035333.1 mouse_genomes_project 9 108685276 108714555 - MGP_AJ_P0095007 Nbeal2 protein_coding protein_coding MGP_AJ_T0095008.1 MGP_AJ_G0035333.1 mouse_genomes_project 9 108685447 108692456 - MGP_AJ_P0095008 Nbeal2 protein_coding protein_coding MGP_AJ_T0095009.1 MGP_AJ_G0035333.1 mouse_genomes_project 9 108685447 108699028 - MGP_AJ_P0095009 Nbeal2 protein_coding protein_coding MGP_AJ_T0095010.1 MGP_AJ_G0035333.1 mouse_genomes_project 9 108688640 108689283 - Nbeal2 protein_coding retained_intron MGP_AJ_T0095011.1 MGP_AJ_G0035333.1 mouse_genomes_project 9 108689312 108690073 - Nbeal2 protein_coding retained_intron MGP_AJ_T0095012.1 MGP_AJ_G0035333.1 mouse_genomes_project 9 108689974 108694854 - MGP_AJ_P0095012 Nbeal2 protein_coding nonsense_mediated_decay MGP_AJ_T0095013.1 MGP_AJ_G0035333.1 mouse_genomes_project 9 108691470 108692285 - Nbeal2 protein_coding retained_intron MGP_AJ_T0095014.1 MGP_AJ_G0035333.1 mouse_genomes_project 9 108695030 108695498 - Nbeal2 protein_coding retained_intron MGP_AJ_T0095015.1 MGP_AJ_G0035333.1 mouse_genomes_project 9 108698728 108705783 - MGP_AJ_P0095015 Nbeal2 protein_coding protein_coding MGP_AJ_T0011075.1 MGP_AJ_G0009197.1 mouse_genomes_project 9 65317298 65317377 - Mir7242 miRNA miRNA MGP_AJ_T0091535.1 MGP_AJ_G0034440.1 mouse_genomes_project 9 18669515 18701491 - MGP_AJ_P0091535 Kank2 protein_coding protein_coding MGP_AJ_T0093353.1 MGP_AJ_G0035030.1 mouse_genomes_project 9 74187297 74265143 - MGP_AJ_P0093353 Fam83b protein_coding protein_coding MGP_AJ_T0093354.1 MGP_AJ_G0035030.1 mouse_genomes_project 9 74187948 74243535 - MGP_AJ_P0093354 Fam83b protein_coding protein_coding MGP_AJ_T0005505.1 MGP_AJ_G0004647.1 mouse_genomes_project 9 94809378 94815452 + Gm16010 antisense antisense MGP_AJ_T0005506.1 MGP_AJ_G0004647.1 mouse_genomes_project 9 94810886 94811858 + Gm16010 antisense antisense MGP_AJ_T0095394.1 MGP_AJ_G0035438.1 mouse_genomes_project 9 120191282 120205636 - MGP_AJ_P0095394 Pomgnt2 protein_coding protein_coding MGP_AJ_T0092615.1 MGP_AJ_G0034849.1 mouse_genomes_project 9 54922486 54925685 + MGP_AJ_P0092615 Fam219b protein_coding protein_coding MGP_AJ_T0092183.1 MGP_AJ_G0034709.1 mouse_genomes_project 9 42380149 42402383 + MGP_AJ_P0092183 Mpzl3 protein_coding protein_coding MGP_AJ_T0092184.1 MGP_AJ_G0034709.1 mouse_genomes_project 9 42380151 42390130 + Mpzl3 protein_coding retained_intron MGP_AJ_T0092185.1 MGP_AJ_G0034709.1 mouse_genomes_project 9 42380172 42391423 + MGP_AJ_P0092185 Mpzl3 protein_coding nonsense_mediated_decay MGP_AJ_T0092186.1 MGP_AJ_G0034709.1 mouse_genomes_project 9 42384209 42390614 + Mpzl3 protein_coding retained_intron MGP_AJ_T0092187.1 MGP_AJ_G0034709.1 mouse_genomes_project 9 42395563 42400107 + Mpzl3 protein_coding retained_intron MGP_AJ_T0091381.1 MGP_AJ_G0034383.1 mouse_genomes_project 9 16764589 16771863 - MGP_AJ_P0091381 Olfr862 protein_coding protein_coding MGP_AJ_T0092489.1 MGP_AJ_G0034810.1 mouse_genomes_project 9 52052873 52072621 - MGP_AJ_P0092489 Wdr61 protein_coding protein_coding MGP_AJ_T0092490.1 MGP_AJ_G0034810.1 mouse_genomes_project 9 52055293 52072641 - MGP_AJ_P0092490 Wdr61 protein_coding protein_coding MGP_AJ_T0092491.1 MGP_AJ_G0034810.1 mouse_genomes_project 9 52057358 52058953 - Wdr61 protein_coding retained_intron MGP_AJ_T0092492.1 MGP_AJ_G0034810.1 mouse_genomes_project 9 52060663 52062496 - Wdr61 protein_coding retained_intron MGP_AJ_T0009243.1 MGP_AJ_G0007427.1 mouse_genomes_project 9 43672540 43675569 - 4930448E22Rik lincRNA lincRNA MGP_AJ_T0095348.1 MGP_AJ_G0035422.1 mouse_genomes_project 9 119568535 119656932 + MGP_AJ_P0095348 Trak1 protein_coding unknown_likely_coding MGP_AJ_T0095349.1 MGP_AJ_G0035422.1 mouse_genomes_project 9 119573079 119675585 + MGP_AJ_P0095349 Trak1 protein_coding protein_coding MGP_AJ_T0094063.1 MGP_AJ_G0035186.1 mouse_genomes_project 9 101936362 101955225 - Ackr4 protein_coding processed_transcript MGP_AJ_T0094066.1 MGP_AJ_G0035186.1 mouse_genomes_project 9 101950788 101979608 - MGP_AJ_P0094066 Ackr4 protein_coding protein_coding MGP_AJ_T0094067.1 MGP_AJ_G0035186.1 mouse_genomes_project 9 101950919 101955684 - MGP_AJ_P0094067 Ackr4 protein_coding protein_coding MGP_AJ_T0016054.1 MGP_AJ_G0014149.1 mouse_genomes_project 9 30887725 30887957 + processed_pseudogene processed_pseudogene MGP_AJ_T0100265.1 MGP_AJ_G0038231.1 mouse_genomes_project 9 42971030 42971137 - Gm22069 snRNA snRNA MGP_AJ_T0094287.1 MGP_AJ_G0035226.1 mouse_genomes_project 9 104794129 105124698 - MGP_AJ_P0094287 Dock3 protein_coding protein_coding MGP_AJ_T0094288.1 MGP_AJ_G0035226.1 mouse_genomes_project 9 104794410 104816185 - MGP_AJ_P0094288 Dock3 protein_coding protein_coding MGP_AJ_T0094289.1 MGP_AJ_G0035226.1 mouse_genomes_project 9 104798081 104803087 - MGP_AJ_P0094289 Dock3 protein_coding protein_coding MGP_AJ_T0094290.1 MGP_AJ_G0035226.1 mouse_genomes_project 9 104809761 104811815 - Dock3 protein_coding processed_transcript MGP_AJ_T0094291.1 MGP_AJ_G0035226.1 mouse_genomes_project 9 104814542 104816487 - Dock3 protein_coding retained_intron MGP_AJ_T0094292.1 MGP_AJ_G0035226.1 mouse_genomes_project 9 104817685 104848156 - MGP_AJ_P0094292 Dock3 protein_coding protein_coding MGP_AJ_T0094293.1 MGP_AJ_G0035226.1 mouse_genomes_project 9 104839735 104863042 - MGP_AJ_P0094293 Dock3 protein_coding protein_coding MGP_AJ_T0094294.1 MGP_AJ_G0035226.1 mouse_genomes_project 9 104918012 104919884 - Dock3 protein_coding retained_intron MGP_AJ_T0094295.1 MGP_AJ_G0035226.1 mouse_genomes_project 9 104944963 105124657 - Dock3 protein_coding retained_intron MGP_AJ_T0094296.1 MGP_AJ_G0035226.1 mouse_genomes_project 9 104974933 105124645 - Dock3 protein_coding retained_intron MGP_AJ_T0094297.1 MGP_AJ_G0035226.1 mouse_genomes_project 9 104996054 105124371 - Dock3 protein_coding retained_intron MGP_AJ_T0016167.1 MGP_AJ_G0014262.1 mouse_genomes_project 9 102022024 102022637 - processed_pseudogene processed_pseudogene MGP_AJ_T0091689.1 MGP_AJ_G0034499.1 mouse_genomes_project 9 28810605 28879516 - MGP_AJ_P0091689 Barx2 protein_coding protein_coding MGP_AJ_T0009263.1 MGP_AJ_G0007443.1 mouse_genomes_project 9 65346514 65348011 - M5C1000I18Rik lincRNA lincRNA MGP_AJ_T0009264.1 MGP_AJ_G0007443.1 mouse_genomes_project 9 65346515 65348033 - M5C1000I18Rik lincRNA lincRNA MGP_AJ_T0009265.1 MGP_AJ_G0007443.1 mouse_genomes_project 9 65346515 65348011 - M5C1000I18Rik lincRNA lincRNA MGP_AJ_T0091781.1 MGP_AJ_G0034528.1 mouse_genomes_project 9 33499476 33501051 + MGP_AJ_P0091781 Gm9513 protein_coding protein_coding MGP_AJ_T0092931.1 MGP_AJ_G0034935.1 mouse_genomes_project 9 62896806 62916534 + MGP_AJ_P0092931 Ubap1l protein_coding protein_coding MGP_AJ_T0002348.1 MGP_AJ_G0002258.1 mouse_genomes_project 9 26971634 27025119 - TEC TEC MGP_AJ_T0094605.1 MGP_AJ_G0035271.1 mouse_genomes_project 9 106215066 106220167 + Rhoa protein_coding retained_intron MGP_AJ_T0094606.1 MGP_AJ_G0035271.1 mouse_genomes_project 9 106215424 106246372 + MGP_AJ_P0094606 Rhoa protein_coding protein_coding MGP_AJ_T0094607.1 MGP_AJ_G0035271.1 mouse_genomes_project 9 106215456 106240554 + MGP_AJ_P0094607 Rhoa protein_coding protein_coding MGP_AJ_T0094608.1 MGP_AJ_G0035271.1 mouse_genomes_project 9 106240197 106246377 + Rhoa protein_coding retained_intron MGP_AJ_T0091537.1 MGP_AJ_G0034442.1 mouse_genomes_project 9 18738124 18739961 + MGP_AJ_P0091537 Angptl8 protein_coding protein_coding MGP_AJ_T0093350.1 MGP_AJ_G0035029.1 mouse_genomes_project 9 73900082 74009859 - MGP_AJ_P0093350 Hcrtr2 protein_coding protein_coding MGP_AJ_T0093351.1 MGP_AJ_G0035029.1 mouse_genomes_project 9 73904167 74010104 - MGP_AJ_P0093351 Hcrtr2 protein_coding protein_coding MGP_AJ_T0093352.1 MGP_AJ_G0035029.1 mouse_genomes_project 9 74007924 74009570 - Hcrtr2 protein_coding retained_intron MGP_AJ_T0016056.1 MGP_AJ_G0014151.1 mouse_genomes_project 9 32231025 32231343 - processed_pseudogene processed_pseudogene MGP_AJ_T0092463.1 MGP_AJ_G0034800.1 mouse_genomes_project 9 51279278 51337379 - MGP_AJ_P0092463 Elmod1 protein_coding protein_coding MGP_AJ_T0092464.1 MGP_AJ_G0034800.1 mouse_genomes_project 9 51279278 51304547 - MGP_AJ_P0092464 Elmod1 protein_coding protein_coding MGP_AJ_T0091769.1 MGP_AJ_G0034519.1 mouse_genomes_project 9 32590976 32594062 - MGP_AJ_P0091769 Pate3 protein_coding protein_coding MGP_AJ_T0100269.1 MGP_AJ_G0038235.1 mouse_genomes_project 9 47218374 47218481 - Gm25633 snRNA snRNA MGP_AJ_T0098753.1 MGP_AJ_G0036737.1 mouse_genomes_project 9 61563389 61563484 + Gm25606 rRNA rRNA MGP_AJ_T0092692.1 MGP_AJ_G0034870.1 mouse_genomes_project 9 55702320 55727941 - MGP_AJ_P0092692 Loxl1 protein_coding protein_coding MGP_AJ_T0093738.1 MGP_AJ_G0035116.1 mouse_genomes_project 9 93334504 93342869 + MGP_AJ_P0093738 Paqr9 protein_coding protein_coding MGP_AJ_T0094444.1 MGP_AJ_G0035248.1 mouse_genomes_project 9 105641543 105671770 - MGP_AJ_P0094444 Rbm5 protein_coding protein_coding MGP_AJ_T0094445.1 MGP_AJ_G0035248.1 mouse_genomes_project 9 105641668 105671755 - Rbm5 protein_coding retained_intron MGP_AJ_T0094446.1 MGP_AJ_G0035248.1 mouse_genomes_project 9 105641669 105661394 - Rbm5 protein_coding retained_intron MGP_AJ_T0094447.1 MGP_AJ_G0035248.1 mouse_genomes_project 9 105641673 105671761 - MGP_AJ_P0094447 Rbm5 protein_coding protein_coding MGP_AJ_T0094448.1 MGP_AJ_G0035248.1 mouse_genomes_project 9 105641673 105671754 - MGP_AJ_P0094448 Rbm5 protein_coding nonsense_mediated_decay MGP_AJ_T0094449.1 MGP_AJ_G0035248.1 mouse_genomes_project 9 105643146 105645466 - MGP_AJ_P0094449 Rbm5 protein_coding protein_coding MGP_AJ_T0094450.1 MGP_AJ_G0035248.1 mouse_genomes_project 9 105644512 105645414 - Rbm5 protein_coding retained_intron MGP_AJ_T0094451.1 MGP_AJ_G0035248.1 mouse_genomes_project 9 105645448 105651199 - Rbm5 protein_coding retained_intron MGP_AJ_T0094452.1 MGP_AJ_G0035248.1 mouse_genomes_project 9 105646373 105651088 - Rbm5 protein_coding retained_intron MGP_AJ_T0094453.1 MGP_AJ_G0035248.1 mouse_genomes_project 9 105647222 105671725 - MGP_AJ_P0094453 Rbm5 protein_coding nonsense_mediated_decay MGP_AJ_T0094454.1 MGP_AJ_G0035248.1 mouse_genomes_project 9 105647323 105653086 - MGP_AJ_P0094454 Rbm5 protein_coding protein_coding MGP_AJ_T0094455.1 MGP_AJ_G0035248.1 mouse_genomes_project 9 105651469 105653138 - Rbm5 protein_coding retained_intron MGP_AJ_T0094456.1 MGP_AJ_G0035248.1 mouse_genomes_project 9 105651676 105654977 - Rbm5 protein_coding retained_intron MGP_AJ_T0094457.1 MGP_AJ_G0035248.1 mouse_genomes_project 9 105653056 105655489 - Rbm5 protein_coding retained_intron MGP_AJ_T0094458.1 MGP_AJ_G0035248.1 mouse_genomes_project 9 105653085 105668371 - MGP_AJ_P0094458 Rbm5 protein_coding nonsense_mediated_decay MGP_AJ_T0094459.1 MGP_AJ_G0035248.1 mouse_genomes_project 9 105654981 105671746 - MGP_AJ_P0094459 Rbm5 protein_coding nonsense_mediated_decay MGP_AJ_T0094460.1 MGP_AJ_G0035248.1 mouse_genomes_project 9 105654985 105658058 - Rbm5 protein_coding retained_intron MGP_AJ_T0094461.1 MGP_AJ_G0035248.1 mouse_genomes_project 9 105655009 105671269 - MGP_AJ_P0094461 Rbm5 protein_coding protein_coding MGP_AJ_T0094462.1 MGP_AJ_G0035248.1 mouse_genomes_project 9 105659280 105671733 - Rbm5 protein_coding retained_intron MGP_AJ_T0094463.1 MGP_AJ_G0035248.1 mouse_genomes_project 9 105661149 105671733 - MGP_AJ_P0094463 Rbm5 protein_coding protein_coding MGP_AJ_T0094464.1 MGP_AJ_G0035248.1 mouse_genomes_project 9 105661214 105671719 - MGP_AJ_P0094464 Rbm5 protein_coding protein_coding MGP_AJ_T0094465.1 MGP_AJ_G0035248.1 mouse_genomes_project 9 105665867 105671763 - Rbm5 protein_coding retained_intron MGP_AJ_T0094466.1 MGP_AJ_G0035248.1 mouse_genomes_project 9 105667380 105671760 - Rbm5 protein_coding retained_intron MGP_AJ_T0094467.1 MGP_AJ_G0035248.1 mouse_genomes_project 9 105669958 105671733 - Rbm5 protein_coding retained_intron MGP_AJ_T0092629.1 MGP_AJ_G0034858.1 mouse_genomes_project 9 55097175 55142768 + MGP_AJ_P0092629 Edc3 protein_coding protein_coding MGP_AJ_T0092630.1 MGP_AJ_G0034858.1 mouse_genomes_project 9 55097190 55141672 + MGP_AJ_P0092630 Edc3 protein_coding nonsense_mediated_decay MGP_AJ_T0092631.1 MGP_AJ_G0034858.1 mouse_genomes_project 9 55097202 55104716 + MGP_AJ_P0092631 Edc3 protein_coding protein_coding MGP_AJ_T0091576.1 MGP_AJ_G0034461.1 mouse_genomes_project 9 19156071 19168726 - MGP_AJ_P0091576 Zfp599 protein_coding protein_coding MGP_AJ_T0009307.1 MGP_AJ_G0007478.1 mouse_genomes_project 9 90781207 90792811 - 1700034K08Rik lincRNA lincRNA MGP_AJ_T0009308.1 MGP_AJ_G0007478.1 mouse_genomes_project 9 90781207 90809075 - 1700034K08Rik lincRNA lincRNA MGP_AJ_T0009309.1 MGP_AJ_G0007478.1 mouse_genomes_project 9 90781288 90809081 - 1700034K08Rik lincRNA lincRNA MGP_AJ_T0009310.1 MGP_AJ_G0007478.1 mouse_genomes_project 9 90804511 90809072 - 1700034K08Rik lincRNA lincRNA MGP_AJ_T0009249.1 MGP_AJ_G0007431.1 mouse_genomes_project 9 53952220 53959974 + Gm26868 lincRNA lincRNA MGP_AJ_T0093422.1 MGP_AJ_G0035050.1 mouse_genomes_project 9 76211972 76223747 - MGP_AJ_P0093422 Mb21d1 protein_coding nonsense_mediated_decay MGP_AJ_T0093423.1 MGP_AJ_G0035050.1 mouse_genomes_project 9 76213108 76223940 - MGP_AJ_P0093423 Mb21d1 protein_coding protein_coding MGP_AJ_T0091376.1 MGP_AJ_G0034378.1 mouse_genomes_project 9 16509584 16532623 + MGP_AJ_P0091376 Zfp317 protein_coding unknown_likely_coding MGP_AJ_T0002413.1 MGP_AJ_G0002322.1 mouse_genomes_project 9 89155060 89155800 - TEC TEC MGP_AJ_T0093077.1 MGP_AJ_G0034971.1 mouse_genomes_project 9 67005065 67040318 + MGP_AJ_P0093077 Ice2 protein_coding protein_coding MGP_AJ_T0093078.1 MGP_AJ_G0034971.1 mouse_genomes_project 9 67005082 67039266 + Ice2 protein_coding retained_intron MGP_AJ_T0093079.1 MGP_AJ_G0034971.1 mouse_genomes_project 9 67005086 67014541 + MGP_AJ_P0093079 Ice2 protein_coding protein_coding MGP_AJ_T0093080.1 MGP_AJ_G0034971.1 mouse_genomes_project 9 67005092 67014915 + MGP_AJ_P0093080 Ice2 protein_coding protein_coding MGP_AJ_T0093081.1 MGP_AJ_G0034971.1 mouse_genomes_project 9 67005094 67014553 + MGP_AJ_P0093081 Ice2 protein_coding protein_coding MGP_AJ_T0093082.1 MGP_AJ_G0034971.1 mouse_genomes_project 9 67005096 67015172 + MGP_AJ_P0093082 Ice2 protein_coding protein_coding MGP_AJ_T0093083.1 MGP_AJ_G0034971.1 mouse_genomes_project 9 67005116 67017396 + MGP_AJ_P0093083 Ice2 protein_coding nonsense_mediated_decay MGP_AJ_T0093084.1 MGP_AJ_G0034971.1 mouse_genomes_project 9 67005807 67014400 + Ice2 protein_coding retained_intron MGP_AJ_T0093085.1 MGP_AJ_G0034971.1 mouse_genomes_project 9 67023922 67032901 + Ice2 protein_coding processed_transcript MGP_AJ_T0093086.1 MGP_AJ_G0034971.1 mouse_genomes_project 9 67024080 67034220 + Ice2 protein_coding retained_intron MGP_AJ_T0011092.1 MGP_AJ_G0009214.1 mouse_genomes_project 9 105986979 105987065 + Mir7088 miRNA miRNA MGP_AJ_T0098762.1 MGP_AJ_G0036746.1 mouse_genomes_project 9 109689503 109689621 - n-R5s90 rRNA rRNA MGP_AJ_T0093997.1 MGP_AJ_G0035171.1 mouse_genomes_project 9 100669561 100742421 + MGP_AJ_P0093997 Ryk protein_coding protein_coding MGP_AJ_T0093998.1 MGP_AJ_G0035171.1 mouse_genomes_project 9 100669616 100742832 + MGP_AJ_P0093998 Ryk protein_coding protein_coding MGP_AJ_T0093999.1 MGP_AJ_G0035171.1 mouse_genomes_project 9 100669626 100743184 + MGP_AJ_P0093999 Ryk protein_coding nonsense_mediated_decay MGP_AJ_T0094000.1 MGP_AJ_G0035171.1 mouse_genomes_project 9 100680741 100696075 + Ryk protein_coding processed_transcript MGP_AJ_T0094001.1 MGP_AJ_G0035171.1 mouse_genomes_project 9 100703140 100716412 + Ryk protein_coding retained_intron MGP_AJ_T0094002.1 MGP_AJ_G0035171.1 mouse_genomes_project 9 100733481 100734472 + Ryk protein_coding retained_intron MGP_AJ_T0092963.1 MGP_AJ_G0034947.1 mouse_genomes_project 9 63380677 63438346 - MGP_AJ_P0092963 Trip4 protein_coding protein_coding MGP_AJ_T0092964.1 MGP_AJ_G0034947.1 mouse_genomes_project 9 63383501 63462278 - MGP_AJ_P0092964 Trip4 protein_coding protein_coding MGP_AJ_T0092965.1 MGP_AJ_G0034947.1 mouse_genomes_project 9 63384898 63438374 - MGP_AJ_P0092965 Trip4 protein_coding protein_coding MGP_AJ_T0092966.1 MGP_AJ_G0034947.1 mouse_genomes_project 9 63390752 63406693 - Trip4 protein_coding retained_intron MGP_AJ_T0092967.1 MGP_AJ_G0034947.1 mouse_genomes_project 9 63434309 63462388 - MGP_AJ_P0092967 Trip4 protein_coding protein_coding MGP_AJ_T0092971.1 MGP_AJ_G0034947.1 mouse_genomes_project 9 63448056 63462321 - Trip4 protein_coding processed_transcript MGP_AJ_T0092972.1 MGP_AJ_G0034947.1 mouse_genomes_project 9 63448394 63462388 - Trip4 protein_coding processed_transcript MGP_AJ_T0092973.1 MGP_AJ_G0034947.1 mouse_genomes_project 9 63448860 63462396 - Trip4 protein_coding processed_transcript MGP_AJ_T0092974.1 MGP_AJ_G0034947.1 mouse_genomes_project 9 63451786 63462388 - Trip4 protein_coding retained_intron MGP_AJ_T0000343.1 MGP_AJ_G0000287.1 mouse_genomes_project 9 121301558 121301627 + mt-Ta Mt_tRNA Mt_tRNA MGP_AJ_T0094740.1 MGP_AJ_G0035289.1 mouse_genomes_project 9 106582502 106584819 + Slc25a20 protein_coding retained_intron MGP_AJ_T0094741.1 MGP_AJ_G0035289.1 mouse_genomes_project 9 106582512 106606499 + MGP_AJ_P0094741 Slc25a20 protein_coding protein_coding MGP_AJ_T0094742.1 MGP_AJ_G0035289.1 mouse_genomes_project 9 106591738 106601705 + Slc25a20 protein_coding retained_intron MGP_AJ_T0091385.1 MGP_AJ_G0034387.1 mouse_genomes_project 9 16973455 16976521 + MGP_AJ_P0091385 Olfr868 protein_coding protein_coding MGP_AJ_T0091961.1 MGP_AJ_G0034633.1 mouse_genomes_project 9 37143181 37144114 - MGP_AJ_P0091961 Olfr975 protein_coding protein_coding MGP_AJ_T0002388.1 MGP_AJ_G0002298.1 mouse_genomes_project 9 73743224 73746722 + TEC TEC MGP_AJ_T0093004.1 MGP_AJ_G0034955.1 mouse_genomes_project 9 63901857 63928293 + Herc1 protein_coding retained_intron MGP_AJ_T0093005.1 MGP_AJ_G0034955.1 mouse_genomes_project 9 63901933 64062080 + MGP_AJ_P0093005 Herc1 protein_coding protein_coding MGP_AJ_T0093006.1 MGP_AJ_G0034955.1 mouse_genomes_project 9 63901992 64062084 + MGP_AJ_P0093006 Herc1 protein_coding unknown_likely_coding MGP_AJ_T0093007.1 MGP_AJ_G0034955.1 mouse_genomes_project 9 63995649 64006035 + Herc1 protein_coding retained_intron MGP_AJ_T0093008.1 MGP_AJ_G0034955.1 mouse_genomes_project 9 64004861 64017855 + MGP_AJ_P0093008 Herc1 protein_coding protein_coding MGP_AJ_T0093009.1 MGP_AJ_G0034955.1 mouse_genomes_project 9 64021715 64029828 + Herc1 protein_coding retained_intron MGP_AJ_T0093010.1 MGP_AJ_G0034955.1 mouse_genomes_project 9 64049520 64053485 + Herc1 protein_coding retained_intron MGP_AJ_T0093011.1 MGP_AJ_G0034955.1 mouse_genomes_project 9 64053219 64060898 + Herc1 protein_coding retained_intron MGP_AJ_T0094749.1 MGP_AJ_G0035291.1 mouse_genomes_project 9 106707402 106721606 + MGP_AJ_P0094749 Ip6k2 protein_coding protein_coding MGP_AJ_T0094750.1 MGP_AJ_G0035291.1 mouse_genomes_project 9 106707402 106729981 + MGP_AJ_P0094750 Ip6k2 protein_coding protein_coding MGP_AJ_T0094751.1 MGP_AJ_G0035291.1 mouse_genomes_project 9 106707428 106722451 + Ip6k2 protein_coding retained_intron MGP_AJ_T0094752.1 MGP_AJ_G0035291.1 mouse_genomes_project 9 106707471 106720594 + Ip6k2 protein_coding retained_intron MGP_AJ_T0094753.1 MGP_AJ_G0035291.1 mouse_genomes_project 9 106707471 106721308 + MGP_AJ_P0094753 Ip6k2 protein_coding protein_coding MGP_AJ_T0094754.1 MGP_AJ_G0035291.1 mouse_genomes_project 9 106707471 106720961 + MGP_AJ_P0094754 Ip6k2 protein_coding nonsense_mediated_decay MGP_AJ_T0094755.1 MGP_AJ_G0035291.1 mouse_genomes_project 9 106719610 106729986 + MGP_AJ_P0094755 Ip6k2 protein_coding protein_coding MGP_AJ_T0094756.1 MGP_AJ_G0035291.1 mouse_genomes_project 9 106719610 106722886 + MGP_AJ_P0094756 Ip6k2 protein_coding protein_coding MGP_AJ_T0094757.1 MGP_AJ_G0035291.1 mouse_genomes_project 9 106719680 106721058 + MGP_AJ_P0094757 Ip6k2 protein_coding nonsense_mediated_decay MGP_AJ_T0094758.1 MGP_AJ_G0035291.1 mouse_genomes_project 9 106719747 106721611 + MGP_AJ_P0094758 Ip6k2 protein_coding protein_coding MGP_AJ_T0094759.1 MGP_AJ_G0035291.1 mouse_genomes_project 9 106719968 106721309 + MGP_AJ_P0094759 Ip6k2 protein_coding protein_coding MGP_AJ_T0094760.1 MGP_AJ_G0035291.1 mouse_genomes_project 9 106721803 106722989 + Ip6k2 protein_coding retained_intron MGP_AJ_T0094523.1 MGP_AJ_G0035258.1 mouse_genomes_project 9 105896558 105903746 + MGP_AJ_P0094523 Cdhr4 protein_coding protein_coding MGP_AJ_T0094524.1 MGP_AJ_G0035258.1 mouse_genomes_project 9 105899751 105902124 + MGP_AJ_P0094524 Cdhr4 protein_coding nonsense_mediated_decay MGP_AJ_T0094525.1 MGP_AJ_G0035258.1 mouse_genomes_project 9 105899787 105900636 + Cdhr4 protein_coding retained_intron MGP_AJ_T0094526.1 MGP_AJ_G0035258.1 mouse_genomes_project 9 105899793 105903734 + Cdhr4 protein_coding retained_intron MGP_AJ_T0094527.1 MGP_AJ_G0035258.1 mouse_genomes_project 9 105899817 105900420 + Cdhr4 protein_coding retained_intron MGP_AJ_T0094528.1 MGP_AJ_G0035258.1 mouse_genomes_project 9 105899824 105903737 + Cdhr4 protein_coding retained_intron MGP_AJ_T0094529.1 MGP_AJ_G0035258.1 mouse_genomes_project 9 105899844 105900992 + Cdhr4 protein_coding retained_intron MGP_AJ_T0094530.1 MGP_AJ_G0035258.1 mouse_genomes_project 9 105899967 105901724 + Cdhr4 protein_coding processed_transcript MGP_AJ_T0094531.1 MGP_AJ_G0035258.1 mouse_genomes_project 9 105900005 105903746 + MGP_AJ_P0094531 Cdhr4 protein_coding protein_coding MGP_AJ_T0094532.1 MGP_AJ_G0035258.1 mouse_genomes_project 9 105900059 105901219 + Cdhr4 protein_coding retained_intron MGP_AJ_T0094534.1 MGP_AJ_G0035258.1 mouse_genomes_project 9 105900677 105903741 + MGP_AJ_P0094534 Cdhr4 protein_coding protein_coding MGP_AJ_T0094535.1 MGP_AJ_G0035258.1 mouse_genomes_project 9 105901433 105903742 + MGP_AJ_P0094535 Cdhr4 protein_coding protein_coding MGP_AJ_T0094536.1 MGP_AJ_G0035258.1 mouse_genomes_project 9 105901654 105903739 + MGP_AJ_P0094536 Cdhr4 protein_coding protein_coding MGP_AJ_T0094537.1 MGP_AJ_G0035258.1 mouse_genomes_project 9 105901739 105903741 + MGP_AJ_P0094537 Cdhr4 protein_coding protein_coding MGP_AJ_T0093287.1 MGP_AJ_G0035011.1 mouse_genomes_project 9 71764310 71795350 + Wdr72 protein_coding processed_transcript MGP_AJ_T0093288.1 MGP_AJ_G0035011.1 mouse_genomes_project 9 71764310 71939089 + MGP_AJ_P0093288 Wdr72 protein_coding protein_coding MGP_AJ_T0093289.1 MGP_AJ_G0035011.1 mouse_genomes_project 9 71764358 71767643 + Wdr72 protein_coding processed_transcript MGP_AJ_T0093290.1 MGP_AJ_G0035011.1 mouse_genomes_project 9 71786885 71937609 + MGP_AJ_P0093290 Wdr72 protein_coding unknown_likely_coding MGP_AJ_T0093291.1 MGP_AJ_G0035011.1 mouse_genomes_project 9 71930011 71939194 + Wdr72 protein_coding processed_transcript MGP_AJ_T0005409.1 MGP_AJ_G0004585.1 mouse_genomes_project 9 6244053 6269209 + Gm16833 antisense antisense MGP_AJ_T0005410.1 MGP_AJ_G0004585.1 mouse_genomes_project 9 6269008 6269209 + Gm16833 antisense antisense MGP_AJ_T0094261.1 MGP_AJ_G0035221.1 mouse_genomes_project 9 104544113 104571119 - MGP_AJ_P0094261 Tex264 protein_coding protein_coding MGP_AJ_T0094262.1 MGP_AJ_G0035221.1 mouse_genomes_project 9 104544113 104570978 - MGP_AJ_P0094262 Tex264 protein_coding protein_coding MGP_AJ_T0094263.1 MGP_AJ_G0035221.1 mouse_genomes_project 9 104544119 104571211 - MGP_AJ_P0094263 Tex264 protein_coding protein_coding MGP_AJ_T0094264.1 MGP_AJ_G0035221.1 mouse_genomes_project 9 104544359 104549353 - Tex264 protein_coding processed_transcript MGP_AJ_T0094265.1 MGP_AJ_G0035221.1 mouse_genomes_project 9 104544415 104571215 - Tex264 protein_coding processed_transcript MGP_AJ_T0094266.1 MGP_AJ_G0035221.1 mouse_genomes_project 9 104544604 104571223 - Tex264 protein_coding processed_transcript MGP_AJ_T0094267.1 MGP_AJ_G0035221.1 mouse_genomes_project 9 104547765 104571205 - Tex264 protein_coding processed_transcript MGP_AJ_T0094268.1 MGP_AJ_G0035221.1 mouse_genomes_project 9 104563392 104570601 - Tex264 protein_coding processed_transcript MGP_AJ_T0094269.1 MGP_AJ_G0035221.1 mouse_genomes_project 9 104570231 104571199 - Tex264 protein_coding processed_transcript MGP_AJ_T0091306.1 MGP_AJ_G0034341.1 mouse_genomes_project 9 12198811 12217448 - MGP_AJ_P0091306 4931406C07Rik protein_coding protein_coding MGP_AJ_T0091307.1 MGP_AJ_G0034341.1 mouse_genomes_project 9 12198811 12222269 - MGP_AJ_P0091307 4931406C07Rik protein_coding protein_coding MGP_AJ_T0091308.1 MGP_AJ_G0034341.1 mouse_genomes_project 9 12198811 12221988 - MGP_AJ_P0091308 4931406C07Rik protein_coding protein_coding MGP_AJ_T0091707.1 MGP_AJ_G0034505.1 mouse_genomes_project 9 31456950 31460217 + MGP_AJ_P0091707 Kirrel3 protein_coding protein_coding MGP_AJ_T0091708.1 MGP_AJ_G0034505.1 mouse_genomes_project 9 31457181 31481655 + Kirrel3 protein_coding processed_transcript MGP_AJ_T0091709.1 MGP_AJ_G0034505.1 mouse_genomes_project 9 31457182 32005544 + MGP_AJ_P0091709 Kirrel3 protein_coding protein_coding MGP_AJ_T0091710.1 MGP_AJ_G0034505.1 mouse_genomes_project 9 31459791 32006980 + MGP_AJ_P0091710 Kirrel3 protein_coding protein_coding MGP_AJ_T0091711.1 MGP_AJ_G0034505.1 mouse_genomes_project 9 31459853 32006980 + MGP_AJ_P0091711 Kirrel3 protein_coding protein_coding MGP_AJ_T0091712.1 MGP_AJ_G0034505.1 mouse_genomes_project 9 31459853 32001177 + MGP_AJ_P0091712 Kirrel3 protein_coding protein_coding MGP_AJ_T0091713.1 MGP_AJ_G0034505.1 mouse_genomes_project 9 31459886 32006574 + MGP_AJ_P0091713 Kirrel3 protein_coding protein_coding MGP_AJ_T0091714.1 MGP_AJ_G0034505.1 mouse_genomes_project 9 31459994 32006574 + MGP_AJ_P0091714 Kirrel3 protein_coding protein_coding MGP_AJ_T0091715.1 MGP_AJ_G0034505.1 mouse_genomes_project 9 31986773 32001175 + MGP_AJ_P0091715 Kirrel3 protein_coding protein_coding MGP_AJ_T0092944.1 MGP_AJ_G0034943.1 mouse_genomes_project 9 63128450 63137070 + MGP_AJ_P0092944 Pif1 protein_coding protein_coding MGP_AJ_T0092945.1 MGP_AJ_G0034943.1 mouse_genomes_project 9 63128472 63129128 + MGP_AJ_P0092945 Pif1 protein_coding protein_coding MGP_AJ_T0092946.1 MGP_AJ_G0034943.1 mouse_genomes_project 9 63128483 63137068 + MGP_AJ_P0092946 Pif1 protein_coding nonsense_mediated_decay MGP_AJ_T0092947.1 MGP_AJ_G0034943.1 mouse_genomes_project 9 63128495 63131783 + Pif1 protein_coding retained_intron MGP_AJ_T0092948.1 MGP_AJ_G0034943.1 mouse_genomes_project 9 63128495 63137073 + MGP_AJ_P0092948 Pif1 protein_coding protein_coding MGP_AJ_T0092949.1 MGP_AJ_G0034943.1 mouse_genomes_project 9 63128503 63137073 + Pif1 protein_coding retained_intron MGP_AJ_T0092950.1 MGP_AJ_G0034943.1 mouse_genomes_project 9 63128511 63137073 + MGP_AJ_P0092950 Pif1 protein_coding protein_coding MGP_AJ_T0092951.1 MGP_AJ_G0034943.1 mouse_genomes_project 9 63128516 63129571 + MGP_AJ_P0092951 Pif1 protein_coding protein_coding MGP_AJ_T0091998.1 MGP_AJ_G0034650.1 mouse_genomes_project 9 38039826 38041100 + protein_coding retained_intron MGP_AJ_T0091999.1 MGP_AJ_G0034650.1 mouse_genomes_project 9 38039998 38041214 + MGP_AJ_P0091999 protein_coding protein_coding MGP_AJ_T0093640.1 MGP_AJ_G0035093.1 mouse_genomes_project 9 86350383 86359359 + MGP_AJ_P0093640 protein_coding protein_coding MGP_AJ_T0101581.1 MGP_AJ_G0039547.1 mouse_genomes_project 9 85642055 85642187 - Gm25528 snoRNA snoRNA MGP_AJ_T0095446.1 MGP_AJ_G0035455.1 mouse_genomes_project 9 121369165 121408711 - MGP_AJ_P0095446 Cdcp1 protein_coding protein_coding MGP_AJ_T0095447.1 MGP_AJ_G0035455.1 mouse_genomes_project 9 121371392 121376394 - Cdcp1 protein_coding retained_intron MGP_AJ_T0095448.1 MGP_AJ_G0035455.1 mouse_genomes_project 9 121378969 121408672 - Cdcp1 protein_coding retained_intron MGP_AJ_T0093251.1 MGP_AJ_G0035004.1 mouse_genomes_project 9 70629652 70661134 + MGP_AJ_P0093251 Ccpg1 protein_coding protein_coding MGP_AJ_T0093252.1 MGP_AJ_G0035004.1 mouse_genomes_project 9 70629727 70646533 + MGP_AJ_P0093252 Ccpg1 protein_coding protein_coding MGP_AJ_T0093253.1 MGP_AJ_G0035004.1 mouse_genomes_project 9 70629801 70658732 + MGP_AJ_P0093253 Ccpg1 protein_coding protein_coding MGP_AJ_T0093254.1 MGP_AJ_G0035004.1 mouse_genomes_project 9 70629809 70632277 + Ccpg1 protein_coding retained_intron MGP_AJ_T0093255.1 MGP_AJ_G0035004.1 mouse_genomes_project 9 70629828 70661132 + MGP_AJ_P0093255 Ccpg1 protein_coding protein_coding MGP_AJ_T0093256.1 MGP_AJ_G0035004.1 mouse_genomes_project 9 70629828 70660794 + MGP_AJ_P0093256 Ccpg1 protein_coding protein_coding MGP_AJ_T0093257.1 MGP_AJ_G0035004.1 mouse_genomes_project 9 70629831 70646805 + Ccpg1 protein_coding retained_intron MGP_AJ_T0093258.1 MGP_AJ_G0035004.1 mouse_genomes_project 9 70629842 70658725 + MGP_AJ_P0093258 Ccpg1 protein_coding nonsense_mediated_decay MGP_AJ_T0093261.1 MGP_AJ_G0035004.1 mouse_genomes_project 9 70654681 70656771 + Ccpg1 protein_coding retained_intron MGP_AJ_T0093264.1 MGP_AJ_G0035004.1 mouse_genomes_project 9 70659766 70661134 + Ccpg1 protein_coding retained_intron MGP_AJ_T0011736.1 MGP_AJ_G0009858.1 mouse_genomes_project 9 41658632 41658909 + Gm22141 misc_RNA misc_RNA MGP_AJ_T0094518.1 MGP_AJ_G0035256.1 mouse_genomes_project 9 105887124 105899069 + Gm20661 protein_coding retained_intron MGP_AJ_T0094519.1 MGP_AJ_G0035256.1 mouse_genomes_project 9 105887159 105898103 + Gm20661 protein_coding retained_intron MGP_AJ_T0094520.1 MGP_AJ_G0035256.1 mouse_genomes_project 9 105887353 105898624 + MGP_AJ_P0094520 Gm20661 protein_coding nonsense_mediated_decay MGP_AJ_T0005552.1 MGP_AJ_G0004685.1 mouse_genomes_project 9 113353377 113354833 - Gm26962 antisense antisense MGP_AJ_T0011042.1 MGP_AJ_G0009164.1 mouse_genomes_project 9 17911334 17911412 - Mir1900 miRNA miRNA MGP_AJ_T0009262.1 MGP_AJ_G0007442.1 mouse_genomes_project 9 61564876 61569148 + 1110036E04Rik lincRNA lincRNA MGP_AJ_T0095238.1 MGP_AJ_G0035389.1 mouse_genomes_project 9 117269842 117288525 + Vill protein_coding retained_intron MGP_AJ_T0095239.1 MGP_AJ_G0035389.1 mouse_genomes_project 9 117269842 117275117 + Vill protein_coding retained_intron MGP_AJ_T0095240.1 MGP_AJ_G0035389.1 mouse_genomes_project 9 117269842 117288519 + MGP_AJ_P0095240 Vill protein_coding protein_coding MGP_AJ_T0095241.1 MGP_AJ_G0035389.1 mouse_genomes_project 9 117269866 117288326 + MGP_AJ_P0095241 Vill protein_coding protein_coding MGP_AJ_T0095242.1 MGP_AJ_G0035389.1 mouse_genomes_project 9 117269929 117275488 + MGP_AJ_P0095242 Vill protein_coding protein_coding MGP_AJ_T0095243.1 MGP_AJ_G0035389.1 mouse_genomes_project 9 117280429 117288326 + MGP_AJ_P0095243 Vill protein_coding protein_coding MGP_AJ_T0095244.1 MGP_AJ_G0035389.1 mouse_genomes_project 9 117280435 117288337 + MGP_AJ_P0095244 Vill protein_coding protein_coding MGP_AJ_T0095245.1 MGP_AJ_G0035389.1 mouse_genomes_project 9 117280436 117287038 + MGP_AJ_P0095245 Vill protein_coding nonsense_mediated_decay MGP_AJ_T0095246.1 MGP_AJ_G0035389.1 mouse_genomes_project 9 117280439 117283782 + MGP_AJ_P0095246 Vill protein_coding protein_coding MGP_AJ_T0095247.1 MGP_AJ_G0035389.1 mouse_genomes_project 9 117280463 117282323 + Vill protein_coding processed_transcript MGP_AJ_T0005531.1 MGP_AJ_G0004667.1 mouse_genomes_project 9 105338776 105339869 - Gm17118 antisense antisense MGP_AJ_T0003170.1 MGP_AJ_G0002940.1 mouse_genomes_project 11 52666643 52672582 - Slc36a1os antisense antisense MGP_AJ_T0003171.1 MGP_AJ_G0002940.1 mouse_genomes_project 11 52667992 52672764 - Slc36a1os antisense antisense MGP_AJ_T0099354.1 MGP_AJ_G0037320.1 mouse_genomes_project 11 83661453 83661600 + Gm23765 snRNA snRNA MGP_AJ_T0033170.1 MGP_AJ_G0019302.1 mouse_genomes_project 11 108120789 108144241 - MGP_AJ_P0033170 Slc16a6 protein_coding protein_coding MGP_AJ_T0033171.1 MGP_AJ_G0019302.1 mouse_genomes_project 11 108122661 108143937 - MGP_AJ_P0033171 Slc16a6 protein_coding protein_coding MGP_AJ_T0033172.1 MGP_AJ_G0019302.1 mouse_genomes_project 11 108128265 108137239 - MGP_AJ_P0033172 Slc16a6 protein_coding protein_coding MGP_AJ_T0033173.1 MGP_AJ_G0019302.1 mouse_genomes_project 11 108130197 108143331 - MGP_AJ_P0033173 Slc16a6 protein_coding protein_coding MGP_AJ_T0033174.1 MGP_AJ_G0019302.1 mouse_genomes_project 11 108137353 108143842 - Slc16a6 protein_coding processed_transcript MGP_AJ_T0029322.1 MGP_AJ_G0018372.1 mouse_genomes_project 11 57160144 57161255 - MGP_AJ_P0029322 Olfr223 protein_coding protein_coding MGP_AJ_T0027787.1 MGP_AJ_G0017957.1 mouse_genomes_project 11 1569019 1570620 + MGP_AJ_P0027787 Gm11032 protein_coding protein_coding MGP_AJ_T0030792.1 MGP_AJ_G0018709.1 mouse_genomes_project 11 74983952 75018438 - MGP_AJ_P0030792 Nsrp1 protein_coding protein_coding MGP_AJ_T0030793.1 MGP_AJ_G0018709.1 mouse_genomes_project 11 74990295 75018040 - MGP_AJ_P0030793 Nsrp1 protein_coding protein_coding MGP_AJ_T0030794.1 MGP_AJ_G0018709.1 mouse_genomes_project 11 74994712 75018438 - Nsrp1 protein_coding processed_transcript MGP_AJ_T0032228.1 MGP_AJ_G0019085.1 mouse_genomes_project 11 98158770 98161727 - MGP_AJ_P0032228 protein_coding protein_coding MGP_AJ_T0028813.1 MGP_AJ_G0018213.1 mouse_genomes_project 11 47509007 47511010 - MGP_AJ_P0028813 protein_coding protein_coding MGP_AJ_T0028814.1 MGP_AJ_G0018213.1 mouse_genomes_project 11 47509010 47511071 - MGP_AJ_P0028814 protein_coding protein_coding MGP_AJ_T0028815.1 MGP_AJ_G0018213.1 mouse_genomes_project 11 47509010 47511155 - MGP_AJ_P0028815 protein_coding protein_coding MGP_AJ_T0029554.1 MGP_AJ_G0018418.1 mouse_genomes_project 11 59676455 59838474 + Specc1 protein_coding retained_intron MGP_AJ_T0029555.1 MGP_AJ_G0018418.1 mouse_genomes_project 11 59676455 59859342 + MGP_AJ_P0029555 Specc1 protein_coding protein_coding MGP_AJ_T0029556.1 MGP_AJ_G0018418.1 mouse_genomes_project 11 59676471 59859794 + MGP_AJ_P0029556 Specc1 protein_coding protein_coding MGP_AJ_T0029557.1 MGP_AJ_G0018418.1 mouse_genomes_project 11 59676502 59764711 + Specc1 protein_coding retained_intron MGP_AJ_T0029558.1 MGP_AJ_G0018418.1 mouse_genomes_project 11 59676507 59943737 + MGP_AJ_P0029558 Specc1 protein_coding protein_coding MGP_AJ_T0029559.1 MGP_AJ_G0018418.1 mouse_genomes_project 11 59695791 59793404 + Specc1 protein_coding processed_transcript MGP_AJ_T0029560.1 MGP_AJ_G0018418.1 mouse_genomes_project 11 59725031 59859342 + MGP_AJ_P0029560 Specc1 protein_coding protein_coding MGP_AJ_T0029561.1 MGP_AJ_G0018418.1 mouse_genomes_project 11 59738368 59862997 + MGP_AJ_P0029561 Specc1 protein_coding protein_coding MGP_AJ_T0029562.1 MGP_AJ_G0018418.1 mouse_genomes_project 11 59738384 59944266 + MGP_AJ_P0029562 Specc1 protein_coding protein_coding MGP_AJ_T0029563.1 MGP_AJ_G0018418.1 mouse_genomes_project 11 59748696 59944959 + MGP_AJ_P0029563 Specc1 protein_coding protein_coding MGP_AJ_T0029564.1 MGP_AJ_G0018418.1 mouse_genomes_project 11 59748719 59946843 + MGP_AJ_P0029564 Specc1 protein_coding protein_coding MGP_AJ_T0029565.1 MGP_AJ_G0018418.1 mouse_genomes_project 11 59796691 59946835 + MGP_AJ_P0029565 Specc1 protein_coding protein_coding MGP_AJ_T0029566.1 MGP_AJ_G0018418.1 mouse_genomes_project 11 59796695 59943886 + MGP_AJ_P0029566 Specc1 protein_coding protein_coding MGP_AJ_T0029567.1 MGP_AJ_G0018418.1 mouse_genomes_project 11 59796741 59798018 + Specc1 protein_coding retained_intron MGP_AJ_T0029568.1 MGP_AJ_G0018418.1 mouse_genomes_project 11 59796755 59859355 + MGP_AJ_P0029568 Specc1 protein_coding protein_coding MGP_AJ_T0029569.1 MGP_AJ_G0018418.1 mouse_genomes_project 11 59796787 59859793 + MGP_AJ_P0029569 Specc1 protein_coding protein_coding MGP_AJ_T0029570.1 MGP_AJ_G0018418.1 mouse_genomes_project 11 59796793 59946843 + MGP_AJ_P0029570 Specc1 protein_coding protein_coding MGP_AJ_T0031280.1 MGP_AJ_G0018835.1 mouse_genomes_project 11 82300224 82320379 - MGP_AJ_P0031280 Gm11437 protein_coding protein_coding MGP_AJ_T0027674.1 MGP_AJ_G0017931.1 mouse_genomes_project 11 405899 411800 + MGP_AJ_P0027674 Pla2g3 protein_coding protein_coding MGP_AJ_T0027675.1 MGP_AJ_G0017931.1 mouse_genomes_project 11 405914 416983 + MGP_AJ_P0027675 Pla2g3 protein_coding nonsense_mediated_decay MGP_AJ_T0027676.1 MGP_AJ_G0017931.1 mouse_genomes_project 11 406605 411797 + Pla2g3 protein_coding retained_intron MGP_AJ_T0028971.1 MGP_AJ_G0018253.1 mouse_genomes_project 11 49740330 49768778 + MGP_AJ_P0028971 Vdac1 protein_coding protein_coding MGP_AJ_T0028972.1 MGP_AJ_G0018253.1 mouse_genomes_project 11 49740605 49767877 + MGP_AJ_P0028972 Vdac1 protein_coding nonsense_mediated_decay MGP_AJ_T0028973.1 MGP_AJ_G0018253.1 mouse_genomes_project 11 49753474 49756150 + Vdac1 protein_coding processed_transcript MGP_AJ_T0028974.1 MGP_AJ_G0018253.1 mouse_genomes_project 11 49753637 49767904 + MGP_AJ_P0028974 Vdac1 protein_coding protein_coding MGP_AJ_T0028975.1 MGP_AJ_G0018253.1 mouse_genomes_project 11 49766577 49768172 + Vdac1 protein_coding retained_intron MGP_AJ_T0017138.1 MGP_AJ_G0015121.1 mouse_genomes_project 11 367387 372084 + 8430429K09Rik processed_transcript processed_transcript MGP_AJ_T0017139.1 MGP_AJ_G0015121.1 mouse_genomes_project 11 367459 371948 + 8430429K09Rik processed_transcript processed_transcript MGP_AJ_T0017140.1 MGP_AJ_G0015121.1 mouse_genomes_project 11 367494 373323 + 8430429K09Rik processed_transcript processed_transcript MGP_AJ_T0017141.1 MGP_AJ_G0015121.1 mouse_genomes_project 11 367494 397482 + 8430429K09Rik processed_transcript processed_transcript MGP_AJ_T0017142.1 MGP_AJ_G0015121.1 mouse_genomes_project 11 367502 372001 + 8430429K09Rik processed_transcript processed_transcript MGP_AJ_T0028102.1 MGP_AJ_G0018027.1 mouse_genomes_project 11 13872824 13910624 - MGP_AJ_P0028102 Plek protein_coding protein_coding MGP_AJ_T0028103.1 MGP_AJ_G0018027.1 mouse_genomes_project 11 13896310 13905052 - MGP_AJ_P0028103 Plek protein_coding protein_coding MGP_AJ_T0003254.1 MGP_AJ_G0003007.1 mouse_genomes_project 11 85981903 85987843 - Gm11505 antisense antisense MGP_AJ_T0030661.1 MGP_AJ_G0018681.1 mouse_genomes_project 11 73426625 73429700 + MGP_AJ_P0030661 Rilp protein_coding protein_coding MGP_AJ_T0030662.1 MGP_AJ_G0018681.1 mouse_genomes_project 11 73426998 73429695 + Rilp protein_coding retained_intron MGP_AJ_T0017170.1 MGP_AJ_G0015134.1 mouse_genomes_project 11 20428966 20429897 + 1700030C12Rik processed_transcript processed_transcript MGP_AJ_T0017171.1 MGP_AJ_G0015134.1 mouse_genomes_project 11 20428970 20430912 + 1700030C12Rik processed_transcript processed_transcript MGP_AJ_T0017172.1 MGP_AJ_G0015134.1 mouse_genomes_project 11 20428996 20430443 + 1700030C12Rik processed_transcript processed_transcript MGP_AJ_T0017173.1 MGP_AJ_G0015134.1 mouse_genomes_project 11 20430101 20430895 + 1700030C12Rik processed_transcript processed_transcript MGP_AJ_T0099343.1 MGP_AJ_G0037309.1 mouse_genomes_project 11 72643151 72643258 + Gm24211 snRNA snRNA MGP_AJ_T0012465.1 MGP_AJ_G0010560.1 mouse_genomes_project 11 2604017 2604461 + processed_pseudogene processed_pseudogene MGP_AJ_T0031603.1 MGP_AJ_G0018912.1 mouse_genomes_project 11 92086734 92114637 - Utp18 protein_coding processed_transcript MGP_AJ_T0031604.1 MGP_AJ_G0018912.1 mouse_genomes_project 11 92086734 92114637 - MGP_AJ_P0031604 Utp18 protein_coding protein_coding MGP_AJ_T0031605.1 MGP_AJ_G0018912.1 mouse_genomes_project 11 92102858 92103622 - Utp18 protein_coding processed_transcript MGP_AJ_T0029285.1 MGP_AJ_G0018359.1 mouse_genomes_project 11 56737347 56745356 - MGP_AJ_P0029285 Guk1 protein_coding protein_coding MGP_AJ_T0029286.1 MGP_AJ_G0018359.1 mouse_genomes_project 11 56737519 56741203 - MGP_AJ_P0029286 Guk1 protein_coding protein_coding MGP_AJ_T0029287.1 MGP_AJ_G0018359.1 mouse_genomes_project 11 56737582 56738917 - Guk1 protein_coding retained_intron MGP_AJ_T0029288.1 MGP_AJ_G0018359.1 mouse_genomes_project 11 56737628 56738321 - Guk1 protein_coding retained_intron MGP_AJ_T0029289.1 MGP_AJ_G0018359.1 mouse_genomes_project 11 56739643 56745216 - Guk1 protein_coding retained_intron MGP_AJ_T0029290.1 MGP_AJ_G0018359.1 mouse_genomes_project 11 56740253 56745636 - MGP_AJ_P0029290 Guk1 protein_coding protein_coding MGP_AJ_T0031987.1 MGP_AJ_G0019007.1 mouse_genomes_project 11 96068609 96074295 - Cwc25 protein_coding processed_transcript MGP_AJ_T0031988.1 MGP_AJ_G0019007.1 mouse_genomes_project 11 96068743 96092797 - MGP_AJ_P0031988 Cwc25 protein_coding protein_coding MGP_AJ_T0031989.1 MGP_AJ_G0019007.1 mouse_genomes_project 11 96070794 96075629 - MGP_AJ_P0031989 Cwc25 protein_coding protein_coding MGP_AJ_T0031990.1 MGP_AJ_G0019007.1 mouse_genomes_project 11 96081289 96092781 - MGP_AJ_P0031990 Cwc25 protein_coding protein_coding MGP_AJ_T0028878.1 MGP_AJ_G0018228.1 mouse_genomes_project 11 48253670 48254616 + MGP_AJ_P0028878 Olfr1378 protein_coding protein_coding MGP_AJ_T0009663.1 MGP_AJ_G0007785.1 mouse_genomes_project 11 25764858 25764927 - Mir216c miRNA miRNA MGP_AJ_T0006181.1 MGP_AJ_G0005160.1 mouse_genomes_project 11 15950046 15961710 + 4933406G16Rik lincRNA lincRNA MGP_AJ_T0012770.1 MGP_AJ_G0010865.1 mouse_genomes_project 11 107821815 107822823 - processed_pseudogene processed_pseudogene MGP_AJ_T0027774.1 MGP_AJ_G0017955.1 mouse_genomes_project 11 1291234 1388054 - MGP_AJ_P0027774 Hormad2 protein_coding protein_coding MGP_AJ_T0027775.1 MGP_AJ_G0017955.1 mouse_genomes_project 11 1291234 1388412 - MGP_AJ_P0027775 Hormad2 protein_coding nonsense_mediated_decay MGP_AJ_T0027776.1 MGP_AJ_G0017955.1 mouse_genomes_project 11 1291803 1388391 - MGP_AJ_P0027776 Hormad2 protein_coding protein_coding MGP_AJ_T0027777.1 MGP_AJ_G0017955.1 mouse_genomes_project 11 1371397 1374592 - Hormad2 protein_coding processed_transcript MGP_AJ_T0027778.1 MGP_AJ_G0017955.1 mouse_genomes_project 11 1371577 1388414 - MGP_AJ_P0027778 Hormad2 protein_coding protein_coding MGP_AJ_T0027779.1 MGP_AJ_G0017955.1 mouse_genomes_project 11 1374643 1383074 - Hormad2 protein_coding processed_transcript MGP_AJ_T0011307.1 MGP_AJ_G0009429.1 mouse_genomes_project 11 83461215 83461511 - Gm22587 misc_RNA misc_RNA MGP_AJ_T0028883.1 MGP_AJ_G0018233.1 mouse_genomes_project 11 48371920 48372733 + Zfp354a protein_coding processed_transcript MGP_AJ_T0028884.1 MGP_AJ_G0018233.1 mouse_genomes_project 11 48371975 48383749 + MGP_AJ_P0028884 Zfp354a protein_coding unknown_likely_coding MGP_AJ_T0099346.1 MGP_AJ_G0037312.1 mouse_genomes_project 11 76807202 76807289 + Gm23219 snRNA snRNA MGP_AJ_T0033030.1 MGP_AJ_G0019276.1 mouse_genomes_project 11 105018456 105114323 - MGP_AJ_P0033030 Ern1 protein_coding protein_coding MGP_AJ_T0033031.1 MGP_AJ_G0019276.1 mouse_genomes_project 11 105021257 105114379 - Ern1 protein_coding processed_transcript MGP_AJ_T0033032.1 MGP_AJ_G0019276.1 mouse_genomes_project 11 105037577 105114363 - MGP_AJ_P0033032 Ern1 protein_coding protein_coding MGP_AJ_T0033033.1 MGP_AJ_G0019276.1 mouse_genomes_project 11 105058604 105114335 - MGP_AJ_P0033033 Ern1 protein_coding protein_coding MGP_AJ_T0033034.1 MGP_AJ_G0019276.1 mouse_genomes_project 11 105083004 105114330 - MGP_AJ_P0033034 Ern1 protein_coding protein_coding MGP_AJ_T0032819.1 MGP_AJ_G0019225.1 mouse_genomes_project 11 101674025 101679902 + MGP_AJ_P0032819 Hexim2 protein_coding protein_coding MGP_AJ_T0032820.1 MGP_AJ_G0019225.1 mouse_genomes_project 11 101674904 101680595 + MGP_AJ_P0032820 Hexim2 protein_coding protein_coding MGP_AJ_T0032821.1 MGP_AJ_G0019225.1 mouse_genomes_project 11 101674929 101680050 + MGP_AJ_P0032821 Hexim2 protein_coding protein_coding MGP_AJ_T0032822.1 MGP_AJ_G0019225.1 mouse_genomes_project 11 101674935 101681280 + MGP_AJ_P0032822 Hexim2 protein_coding protein_coding MGP_AJ_T0032823.1 MGP_AJ_G0019225.1 mouse_genomes_project 11 101675455 101679683 + MGP_AJ_P0032823 Hexim2 protein_coding protein_coding MGP_AJ_T0009657.1 MGP_AJ_G0007779.1 mouse_genomes_project 11 18490481 18490570 - Gm22990 miRNA miRNA MGP_AJ_T0029722.1 MGP_AJ_G0018455.1 mouse_genomes_project 11 64928596 64956208 + MGP_AJ_P0029722 Myh2 protein_coding protein_coding MGP_AJ_T0029723.1 MGP_AJ_G0018455.1 mouse_genomes_project 11 64928633 64956079 + MGP_AJ_P0029723 Myh2 protein_coding unknown_likely_coding MGP_AJ_T0029724.1 MGP_AJ_G0018455.1 mouse_genomes_project 11 64928635 64932193 + Myh2 protein_coding retained_intron MGP_AJ_T0029725.1 MGP_AJ_G0018455.1 mouse_genomes_project 11 64928789 64956205 + MGP_AJ_P0029725 Myh2 protein_coding protein_coding MGP_AJ_T0027631.1 MGP_AJ_G0017926.1 mouse_genomes_project 11 157753 174263 - MGP_AJ_P0027631 Drg1 protein_coding protein_coding MGP_AJ_T0027632.1 MGP_AJ_G0017926.1 mouse_genomes_project 11 157943 160709 - Drg1 protein_coding retained_intron MGP_AJ_T0027633.1 MGP_AJ_G0017926.1 mouse_genomes_project 11 162260 170405 - Drg1 protein_coding retained_intron MGP_AJ_T0027634.1 MGP_AJ_G0017926.1 mouse_genomes_project 11 164170 174262 - Drg1 protein_coding processed_transcript MGP_AJ_T0027635.1 MGP_AJ_G0017926.1 mouse_genomes_project 11 165659 174285 - Drg1 protein_coding retained_intron MGP_AJ_T0027636.1 MGP_AJ_G0017926.1 mouse_genomes_project 11 167256 174263 - MGP_AJ_P0027636 Drg1 protein_coding nonsense_mediated_decay MGP_AJ_T0034133.1 MGP_AJ_G0019496.1 mouse_genomes_project 11 119696254 119698316 + Gps1 protein_coding retained_intron MGP_AJ_T0034134.1 MGP_AJ_G0019496.1 mouse_genomes_project 11 119696257 119701080 + MGP_AJ_P0034134 Gps1 protein_coding protein_coding MGP_AJ_T0034135.1 MGP_AJ_G0019496.1 mouse_genomes_project 11 119696257 119700766 + MGP_AJ_P0034135 Gps1 protein_coding nonsense_mediated_decay MGP_AJ_T0034136.1 MGP_AJ_G0019496.1 mouse_genomes_project 11 119696274 119701089 + MGP_AJ_P0034136 Gps1 protein_coding unknown_likely_coding MGP_AJ_T0034137.1 MGP_AJ_G0019496.1 mouse_genomes_project 11 119696287 119701085 + MGP_AJ_P0034137 Gps1 protein_coding protein_coding MGP_AJ_T0034138.1 MGP_AJ_G0019496.1 mouse_genomes_project 11 119696497 119701085 + MGP_AJ_P0034138 Gps1 protein_coding protein_coding MGP_AJ_T0034139.1 MGP_AJ_G0019496.1 mouse_genomes_project 11 119698754 119699744 + Gps1 protein_coding retained_intron MGP_AJ_T0028602.1 MGP_AJ_G0018150.1 mouse_genomes_project 11 40891071 40912005 - MGP_AJ_P0028602 Ttc1 protein_coding protein_coding MGP_AJ_T0028603.1 MGP_AJ_G0018150.1 mouse_genomes_project 11 40891568 40911979 - MGP_AJ_P0028603 Ttc1 protein_coding protein_coding MGP_AJ_T0028604.1 MGP_AJ_G0018150.1 mouse_genomes_project 11 40906572 40911989 - Ttc1 protein_coding processed_transcript MGP_AJ_T0100627.1 MGP_AJ_G0038593.1 mouse_genomes_project 11 97380518 97380640 - Gm23451 snoRNA snoRNA MGP_AJ_T0099317.1 MGP_AJ_G0037283.1 mouse_genomes_project 11 20706822 20706967 - Gm23827 snRNA snRNA MGP_AJ_T0032514.1 MGP_AJ_G0019171.1 mouse_genomes_project 11 99930225 99940526 + MGP_AJ_P0032514 Ifi35 protein_coding protein_coding MGP_AJ_T0032515.1 MGP_AJ_G0019171.1 mouse_genomes_project 11 99930262 99939953 + Ifi35 protein_coding retained_intron MGP_AJ_T0032516.1 MGP_AJ_G0019171.1 mouse_genomes_project 11 99930388 99940292 + MGP_AJ_P0032516 Ifi35 protein_coding nonsense_mediated_decay MGP_AJ_T0012522.1 MGP_AJ_G0010617.1 mouse_genomes_project 11 18420501 18420832 - processed_pseudogene processed_pseudogene MGP_AJ_T0030562.1 MGP_AJ_G0018658.1 mouse_genomes_project 11 72255508 72256557 - MGP_AJ_P0030562 protein_coding protein_coding MGP_AJ_T0030563.1 MGP_AJ_G0018658.1 mouse_genomes_project 11 72255776 72261501 - MGP_AJ_P0030563 protein_coding protein_coding MGP_AJ_T0099376.1 MGP_AJ_G0037342.1 mouse_genomes_project 11 100162911 100163102 + Rnu2-10 snRNA snRNA MGP_AJ_T0099380.1 MGP_AJ_G0037346.1 mouse_genomes_project 11 104887110 104887218 + Gm23645 snRNA snRNA MGP_AJ_T0003231.1 MGP_AJ_G0002990.1 mouse_genomes_project 11 76362282 76373455 + Slc13a2os antisense antisense MGP_AJ_T0028765.1 MGP_AJ_G0018203.1 mouse_genomes_project 11 46921108 46922617 + MGP_AJ_P0028765 Scgb3a1 protein_coding protein_coding MGP_AJ_T0028766.1 MGP_AJ_G0018203.1 mouse_genomes_project 11 46921108 46922617 + MGP_AJ_P0028766 Scgb3a1 protein_coding protein_coding MGP_AJ_T0006257.1 MGP_AJ_G0005227.1 mouse_genomes_project 11 61929749 61947339 + Gm12290 lincRNA lincRNA MGP_AJ_T0012635.1 MGP_AJ_G0010730.1 mouse_genomes_project 11 58036861 58037303 + processed_pseudogene processed_pseudogene MGP_AJ_T0009671.1 MGP_AJ_G0007793.1 mouse_genomes_project 11 41644663 41644713 + Gm22121 miRNA miRNA MGP_AJ_T0012604.1 MGP_AJ_G0010699.1 mouse_genomes_project 11 49785712 49785875 + processed_pseudogene processed_pseudogene MGP_AJ_T0027741.1 MGP_AJ_G0017946.1 mouse_genomes_project 11 1034743 1038707 - MGP_AJ_P0027741 Mtfp1 protein_coding protein_coding MGP_AJ_T0027742.1 MGP_AJ_G0017946.1 mouse_genomes_project 11 1037697 1038404 - Mtfp1 protein_coding processed_transcript MGP_AJ_T0098817.1 MGP_AJ_G0036801.1 mouse_genomes_project 11 16575649 16575793 - Gm23386 scaRNA scaRNA MGP_AJ_T0030044.1 MGP_AJ_G0018531.1 mouse_genomes_project 11 67697518 67698853 - MGP_AJ_P0030044 Tmem95 protein_coding protein_coding MGP_AJ_T0003128.1 MGP_AJ_G0002902.1 mouse_genomes_project 11 15892457 15894511 + Gm16140 antisense antisense MGP_AJ_T0003129.1 MGP_AJ_G0002902.1 mouse_genomes_project 11 15892459 15894121 + Gm16140 antisense antisense MGP_AJ_T0009682.1 MGP_AJ_G0007804.1 mouse_genomes_project 11 51170071 51170129 - Mir7671 miRNA miRNA MGP_AJ_T0003155.1 MGP_AJ_G0002927.1 mouse_genomes_project 11 48564386 48565975 + Gm12569 antisense antisense MGP_AJ_T0003156.1 MGP_AJ_G0002927.1 mouse_genomes_project 11 48565046 48565830 + Gm12569 antisense antisense MGP_AJ_T0032950.1 MGP_AJ_G0019254.1 mouse_genomes_project 11 104189394 104375821 + MGP_AJ_P0032950 Tanc2 protein_coding protein_coding MGP_AJ_T0032951.1 MGP_AJ_G0019254.1 mouse_genomes_project 11 104189399 104548908 + MGP_AJ_P0032951 Tanc2 protein_coding protein_coding MGP_AJ_T0032952.1 MGP_AJ_G0019254.1 mouse_genomes_project 11 104189548 104548489 + MGP_AJ_P0032952 Tanc2 protein_coding protein_coding MGP_AJ_T0032953.1 MGP_AJ_G0019254.1 mouse_genomes_project 11 104223256 104305636 + Tanc2 protein_coding processed_transcript MGP_AJ_T0032954.1 MGP_AJ_G0019254.1 mouse_genomes_project 11 104303622 104304912 + MGP_AJ_P0032954 Tanc2 protein_coding protein_coding MGP_AJ_T0032955.1 MGP_AJ_G0019254.1 mouse_genomes_project 11 104510079 104543731 + MGP_AJ_P0032955 Tanc2 protein_coding protein_coding MGP_AJ_T0032956.1 MGP_AJ_G0019254.1 mouse_genomes_project 11 104520618 104535799 + Tanc2 protein_coding processed_transcript MGP_AJ_T0031866.1 MGP_AJ_G0018980.1 mouse_genomes_project 11 95077174 95092803 + MGP_AJ_P0031866 Cbx1 protein_coding protein_coding MGP_AJ_T0031867.1 MGP_AJ_G0018980.1 mouse_genomes_project 11 95077184 95098007 + MGP_AJ_P0031867 Cbx1 protein_coding nonsense_mediated_decay MGP_AJ_T0031868.1 MGP_AJ_G0018980.1 mouse_genomes_project 11 95077206 95098498 + MGP_AJ_P0031868 Cbx1 protein_coding protein_coding MGP_AJ_T0031869.1 MGP_AJ_G0018980.1 mouse_genomes_project 11 95077222 95089512 + Cbx1 protein_coding retained_intron MGP_AJ_T0031870.1 MGP_AJ_G0018980.1 mouse_genomes_project 11 95077296 95098398 + MGP_AJ_P0031870 Cbx1 protein_coding protein_coding MGP_AJ_T0028001.1 MGP_AJ_G0018004.1 mouse_genomes_project 11 3807770 3809838 - Gm11983 protein_coding translated_processed_pseudogene MGP_AJ_T0028002.1 MGP_AJ_G0018004.1 mouse_genomes_project 11 3808991 3809309 - MGP_AJ_P0028002 Gm11983 protein_coding protein_coding MGP_AJ_T0033319.1 MGP_AJ_G0019340.1 mouse_genomes_project 11 113891488 113949576 + Rab37 protein_coding retained_intron MGP_AJ_T0033320.1 MGP_AJ_G0019340.1 mouse_genomes_project 11 113891488 113962909 + MGP_AJ_P0033320 Rab37 protein_coding protein_coding MGP_AJ_T0033329.1 MGP_AJ_G0019340.1 mouse_genomes_project 11 113954834 113962909 + MGP_AJ_P0033329 Rab37 protein_coding protein_coding MGP_AJ_T0033330.1 MGP_AJ_G0019340.1 mouse_genomes_project 11 113954880 113958224 + Rab37 protein_coding retained_intron MGP_AJ_T0029056.1 MGP_AJ_G0018277.1 mouse_genomes_project 11 51294313 51422058 - MGP_AJ_P0029056 Slc22a21 protein_coding nonsense_mediated_decay MGP_AJ_T0029057.1 MGP_AJ_G0018277.1 mouse_genomes_project 11 51387185 51432787 - MGP_AJ_P0029057 Slc22a21 protein_coding protein_coding MGP_AJ_T0029754.1 MGP_AJ_G0018464.1 mouse_genomes_project 11 65571423 65574044 + Dhrs7c protein_coding processed_transcript MGP_AJ_T0029755.1 MGP_AJ_G0018464.1 mouse_genomes_project 11 65571507 65574412 + Dhrs7c protein_coding processed_transcript MGP_AJ_T0029756.1 MGP_AJ_G0018464.1 mouse_genomes_project 11 65571512 65574573 + Dhrs7c protein_coding processed_transcript MGP_AJ_T0029757.1 MGP_AJ_G0018464.1 mouse_genomes_project 11 65571513 65572303 + Dhrs7c protein_coding processed_transcript MGP_AJ_T0029758.1 MGP_AJ_G0018464.1 mouse_genomes_project 11 65571523 65589228 + MGP_AJ_P0029758 Dhrs7c protein_coding protein_coding MGP_AJ_T0100566.1 MGP_AJ_G0038532.1 mouse_genomes_project 11 3523134 3523223 - Gm24000 snoRNA snoRNA MGP_AJ_T0003317.1 MGP_AJ_G0003058.1 mouse_genomes_project 11 104749958 104750911 - Gm11672 antisense antisense MGP_AJ_T0029668.1 MGP_AJ_G0018441.1 mouse_genomes_project 11 62204460 62290479 + MGP_AJ_P0029668 Hs3st3a1 protein_coding protein_coding MGP_AJ_T0006357.1 MGP_AJ_G0005297.1 mouse_genomes_project 11 112858131 112862038 + 1700025D23Rik lincRNA lincRNA MGP_AJ_T0033682.1 MGP_AJ_G0019406.1 mouse_genomes_project 11 115598024 115607844 - MGP_AJ_P0033682 St6galnac1 protein_coding protein_coding MGP_AJ_T0029667.1 MGP_AJ_G0018440.1 mouse_genomes_project 11 62204284 62205782 - MGP_AJ_P0029667 F930015N05Rik protein_coding protein_coding MGP_AJ_T0009729.1 MGP_AJ_G0007851.1 mouse_genomes_project 11 85942376 85942491 - Mir142b miRNA miRNA MGP_AJ_T0006227.1 MGP_AJ_G0005200.1 mouse_genomes_project 11 41440182 41442704 - Gm12154 lincRNA lincRNA MGP_AJ_T0006269.1 MGP_AJ_G0005236.1 mouse_genomes_project 11 69329742 69336227 - Gm16013 lincRNA lincRNA MGP_AJ_T0098901.1 MGP_AJ_G0036884.1 mouse_genomes_project 11 85885816 85889662 + 1110028F11Rik sense_intronic sense_intronic MGP_AJ_T0098902.1 MGP_AJ_G0036884.1 mouse_genomes_project 11 85886543 85889320 + 1110028F11Rik sense_intronic sense_intronic MGP_AJ_T0031129.1 MGP_AJ_G0018784.1 mouse_genomes_project 11 78896403 78906702 + MGP_AJ_P0031129 Spaca3 protein_coding protein_coding MGP_AJ_T0031130.1 MGP_AJ_G0018784.1 mouse_genomes_project 11 78896410 78906706 + MGP_AJ_P0031130 Spaca3 protein_coding protein_coding MGP_AJ_T0028468.1 MGP_AJ_G0018114.1 mouse_genomes_project 11 30234807 30245684 - MGP_AJ_P0028468 Npm1 protein_coding protein_coding MGP_AJ_T0028469.1 MGP_AJ_G0018114.1 mouse_genomes_project 11 30235028 30245550 - MGP_AJ_P0028469 Npm1 protein_coding protein_coding MGP_AJ_T0028470.1 MGP_AJ_G0018114.1 mouse_genomes_project 11 30235031 30236990 - Npm1 protein_coding processed_transcript MGP_AJ_T0028471.1 MGP_AJ_G0018114.1 mouse_genomes_project 11 30237451 30245555 - MGP_AJ_P0028471 Npm1 protein_coding protein_coding MGP_AJ_T0028472.1 MGP_AJ_G0018114.1 mouse_genomes_project 11 30237852 30245554 - MGP_AJ_P0028472 Npm1 protein_coding protein_coding MGP_AJ_T0028473.1 MGP_AJ_G0018114.1 mouse_genomes_project 11 30238550 30239802 - Npm1 protein_coding processed_transcript MGP_AJ_T0028722.1 MGP_AJ_G0018189.1 mouse_genomes_project 11 46348872 46355123 + MGP_AJ_P0028722 Olfr1395 protein_coding protein_coding MGP_AJ_T0028723.1 MGP_AJ_G0018189.1 mouse_genomes_project 11 46354169 46355123 + MGP_AJ_P0028723 Olfr1395 protein_coding protein_coding MGP_AJ_T0030836.1 MGP_AJ_G0018719.1 mouse_genomes_project 11 75636267 75662943 + MGP_AJ_P0030836 Nufip2 protein_coding protein_coding MGP_AJ_T0030837.1 MGP_AJ_G0018719.1 mouse_genomes_project 11 75636284 75692487 + MGP_AJ_P0030837 Nufip2 protein_coding protein_coding MGP_AJ_T0030838.1 MGP_AJ_G0018719.1 mouse_genomes_project 11 75637571 75641937 + Nufip2 protein_coding processed_transcript MGP_AJ_T0030839.1 MGP_AJ_G0018719.1 mouse_genomes_project 11 75637713 75641735 + Nufip2 protein_coding processed_transcript MGP_AJ_T0033804.1 MGP_AJ_G0019434.1 mouse_genomes_project 11 117279025 117284600 - MGP_AJ_P0033804 Lgals3bp protein_coding protein_coding MGP_AJ_T0033805.1 MGP_AJ_G0019434.1 mouse_genomes_project 11 117279025 117288561 - MGP_AJ_P0033805 Lgals3bp protein_coding protein_coding MGP_AJ_T0033806.1 MGP_AJ_G0019434.1 mouse_genomes_project 11 117282881 117288321 - MGP_AJ_P0033806 Lgals3bp protein_coding protein_coding MGP_AJ_T0033807.1 MGP_AJ_G0019434.1 mouse_genomes_project 11 117283083 117288341 - Lgals3bp protein_coding processed_transcript MGP_AJ_T0033808.1 MGP_AJ_G0019434.1 mouse_genomes_project 11 117286228 117287506 - MGP_AJ_P0033808 Lgals3bp protein_coding protein_coding MGP_AJ_T0028318.1 MGP_AJ_G0018078.1 mouse_genomes_project 11 26370879 26504131 + MGP_AJ_P0028318 Ccdc88a protein_coding protein_coding MGP_AJ_T0028319.1 MGP_AJ_G0018078.1 mouse_genomes_project 11 26370998 26422055 + MGP_AJ_P0028319 Ccdc88a protein_coding protein_coding MGP_AJ_T0028320.1 MGP_AJ_G0018078.1 mouse_genomes_project 11 26449269 26454053 + Ccdc88a protein_coding processed_transcript MGP_AJ_T0028321.1 MGP_AJ_G0018078.1 mouse_genomes_project 11 26456717 26475502 + MGP_AJ_P0028321 Ccdc88a protein_coding protein_coding MGP_AJ_T0028322.1 MGP_AJ_G0018078.1 mouse_genomes_project 11 26463179 26497447 + MGP_AJ_P0028322 Ccdc88a protein_coding protein_coding MGP_AJ_T0028323.1 MGP_AJ_G0018078.1 mouse_genomes_project 11 26478945 26496859 + MGP_AJ_P0028323 Ccdc88a protein_coding protein_coding MGP_AJ_T0028324.1 MGP_AJ_G0018078.1 mouse_genomes_project 11 26487236 26491174 + Ccdc88a protein_coding processed_transcript MGP_AJ_T0100569.1 MGP_AJ_G0038535.1 mouse_genomes_project 11 4997089 4997164 - Gm24051 snoRNA snoRNA MGP_AJ_T0009758.1 MGP_AJ_G0007880.1 mouse_genomes_project 11 105415503 105415570 - Mir3064 miRNA miRNA MGP_AJ_T0033321.1 MGP_AJ_G0019341.1 mouse_genomes_project 11 113916542 113934629 - MGP_AJ_P0033321 Cd300lf protein_coding unknown_likely_coding MGP_AJ_T0033322.1 MGP_AJ_G0019341.1 mouse_genomes_project 11 113916545 113934740 - MGP_AJ_P0033322 Cd300lf protein_coding protein_coding MGP_AJ_T0033323.1 MGP_AJ_G0019341.1 mouse_genomes_project 11 113916545 113934740 - MGP_AJ_P0033323 Cd300lf protein_coding protein_coding MGP_AJ_T0033324.1 MGP_AJ_G0019341.1 mouse_genomes_project 11 113916545 113934740 - MGP_AJ_P0033324 Cd300lf protein_coding protein_coding MGP_AJ_T0033325.1 MGP_AJ_G0019341.1 mouse_genomes_project 11 113919207 113934739 - Cd300lf protein_coding processed_transcript MGP_AJ_T0033326.1 MGP_AJ_G0019341.1 mouse_genomes_project 11 113920610 113927505 - Cd300lf protein_coding processed_transcript MGP_AJ_T0033327.1 MGP_AJ_G0019341.1 mouse_genomes_project 11 113920694 113927452 - Cd300lf protein_coding processed_transcript MGP_AJ_T0033328.1 MGP_AJ_G0019341.1 mouse_genomes_project 11 113920706 113927446 - Cd300lf protein_coding processed_transcript MGP_AJ_T0009762.1 MGP_AJ_G0007884.1 mouse_genomes_project 11 106653565 106653634 + Mir7223 miRNA miRNA MGP_AJ_T0009659.1 MGP_AJ_G0007781.1 mouse_genomes_project 11 20943575 20943680 + Gm44381 miRNA miRNA MGP_AJ_T0028719.1 MGP_AJ_G0018187.1 mouse_genomes_project 11 46318321 46319302 - MGP_AJ_P0028719 protein_coding protein_coding MGP_AJ_T0031519.1 MGP_AJ_G0018888.1 mouse_genomes_project 11 86272893 86289359 + MGP_AJ_P0031519 Vezf1 protein_coding protein_coding MGP_AJ_T0031520.1 MGP_AJ_G0018888.1 mouse_genomes_project 11 86278210 86289359 + MGP_AJ_P0031520 Vezf1 protein_coding protein_coding MGP_AJ_T0012771.1 MGP_AJ_G0010866.1 mouse_genomes_project 11 109991628 109993047 + processed_pseudogene processed_pseudogene MGP_AJ_T0006243.1 MGP_AJ_G0005214.1 mouse_genomes_project 11 55038396 55040502 + Gm12243 lincRNA lincRNA MGP_AJ_T0029369.1 MGP_AJ_G0018382.1 mouse_genomes_project 11 57785939 57797219 - MGP_AJ_P0029369 Srebf1 protein_coding protein_coding MGP_AJ_T0029370.1 MGP_AJ_G0018382.1 mouse_genomes_project 11 57785939 57809421 - MGP_AJ_P0029370 Srebf1 protein_coding protein_coding MGP_AJ_T0029371.1 MGP_AJ_G0018382.1 mouse_genomes_project 11 57786979 57787893 - Srebf1 protein_coding processed_transcript MGP_AJ_T0029372.1 MGP_AJ_G0018382.1 mouse_genomes_project 11 57787312 57797172 - MGP_AJ_P0029372 Srebf1 protein_coding protein_coding MGP_AJ_T0029373.1 MGP_AJ_G0018382.1 mouse_genomes_project 11 57788215 57789067 - Srebf1 protein_coding processed_transcript MGP_AJ_T0029374.1 MGP_AJ_G0018382.1 mouse_genomes_project 11 57788217 57789349 - Srebf1 protein_coding processed_transcript MGP_AJ_T0029375.1 MGP_AJ_G0018382.1 mouse_genomes_project 11 57788652 57790570 - Srebf1 protein_coding processed_transcript MGP_AJ_T0029376.1 MGP_AJ_G0018382.1 mouse_genomes_project 11 57789383 57790213 - Srebf1 protein_coding processed_transcript MGP_AJ_T0029377.1 MGP_AJ_G0018382.1 mouse_genomes_project 11 57789825 57791003 - Srebf1 protein_coding processed_transcript MGP_AJ_T0029378.1 MGP_AJ_G0018382.1 mouse_genomes_project 11 57790901 57792838 - Srebf1 protein_coding processed_transcript MGP_AJ_T0029379.1 MGP_AJ_G0018382.1 mouse_genomes_project 11 57792684 57797099 - Srebf1 protein_coding processed_transcript MGP_AJ_T0029380.1 MGP_AJ_G0018382.1 mouse_genomes_project 11 57793657 57811425 - Srebf1 protein_coding processed_transcript MGP_AJ_T0032496.1 MGP_AJ_G0019167.1 mouse_genomes_project 11 99883439 99893891 - MGP_AJ_P0032496 Aarsd1 protein_coding protein_coding MGP_AJ_T0032498.1 MGP_AJ_G0019167.1 mouse_genomes_project 11 99887283 99893660 - Aarsd1 protein_coding processed_transcript MGP_AJ_T0032499.1 MGP_AJ_G0019167.1 mouse_genomes_project 11 99887884 99893658 - Aarsd1 protein_coding retained_intron MGP_AJ_T0032500.1 MGP_AJ_G0019167.1 mouse_genomes_project 11 99890088 99890905 - Aarsd1 protein_coding retained_intron MGP_AJ_T0032501.1 MGP_AJ_G0019167.1 mouse_genomes_project 11 99893023 99893682 - Aarsd1 protein_coding retained_intron MGP_AJ_T0012764.1 MGP_AJ_G0010859.1 mouse_genomes_project 11 105810779 105811112 - processed_pseudogene processed_pseudogene MGP_AJ_T0030505.1 MGP_AJ_G0018627.1 mouse_genomes_project 11 71179295 71212610 + MGP_AJ_P0030505 Trpv3 protein_coding protein_coding MGP_AJ_T0012482.1 MGP_AJ_G0010577.1 mouse_genomes_project 11 7343095 7343408 - processed_pseudogene processed_pseudogene MGP_AJ_T0006274.1 MGP_AJ_G0005240.1 mouse_genomes_project 11 69635810 69636880 - Gm12326 lincRNA lincRNA MGP_AJ_T0006275.1 MGP_AJ_G0005240.1 mouse_genomes_project 11 69636424 69636861 - Gm12326 lincRNA lincRNA MGP_AJ_T0031368.1 MGP_AJ_G0018853.1 mouse_genomes_project 11 84236267 84367463 - MGP_AJ_P0031368 Brip1 protein_coding unknown_likely_coding MGP_AJ_T0031369.1 MGP_AJ_G0018853.1 mouse_genomes_project 11 84361410 84367539 - Brip1 protein_coding processed_transcript MGP_AJ_T0031370.1 MGP_AJ_G0018853.1 mouse_genomes_project 11 84362076 84367541 - Brip1 protein_coding processed_transcript MGP_AJ_T0017225.1 MGP_AJ_G0015165.1 mouse_genomes_project 11 81692602 81736271 + E230016K23Rik processed_transcript processed_transcript MGP_AJ_T0017226.1 MGP_AJ_G0015165.1 mouse_genomes_project 11 81692630 81715008 + E230016K23Rik processed_transcript processed_transcript MGP_AJ_T0017227.1 MGP_AJ_G0015165.1 mouse_genomes_project 11 81734239 81735481 + E230016K23Rik processed_transcript processed_transcript MGP_AJ_T0028216.1 MGP_AJ_G0018058.1 mouse_genomes_project 11 20180768 20222330 + MGP_AJ_P0028216 Xpo1 protein_coding protein_coding MGP_AJ_T0028217.1 MGP_AJ_G0018058.1 mouse_genomes_project 11 20180768 20222330 + MGP_AJ_P0028217 Xpo1 protein_coding protein_coding MGP_AJ_T0028218.1 MGP_AJ_G0018058.1 mouse_genomes_project 11 20180782 20220966 + MGP_AJ_P0028218 Xpo1 protein_coding protein_coding MGP_AJ_T0028219.1 MGP_AJ_G0018058.1 mouse_genomes_project 11 20180785 20207458 + Xpo1 protein_coding processed_transcript MGP_AJ_T0028220.1 MGP_AJ_G0018058.1 mouse_genomes_project 11 20180805 20222982 + MGP_AJ_P0028220 Xpo1 protein_coding protein_coding MGP_AJ_T0028221.1 MGP_AJ_G0018058.1 mouse_genomes_project 11 20181317 20192449 + MGP_AJ_P0028221 Xpo1 protein_coding protein_coding MGP_AJ_T0028222.1 MGP_AJ_G0018058.1 mouse_genomes_project 11 20209375 20212183 + MGP_AJ_P0028222 Xpo1 protein_coding protein_coding MGP_AJ_T0012508.1 MGP_AJ_G0010603.1 mouse_genomes_project 11 16670381 16671213 + processed_pseudogene processed_pseudogene MGP_AJ_T0011315.1 MGP_AJ_G0009437.1 mouse_genomes_project 11 103722734 103722830 + Gm24290 misc_RNA misc_RNA MGP_AJ_T0003119.1 MGP_AJ_G0002896.1 mouse_genomes_project 11 8534220 8555915 + Gm11998 antisense antisense MGP_AJ_T0028861.1 MGP_AJ_G0018223.1 mouse_genomes_project 11 48156828 48171602 - MGP_AJ_P0028861 Zfp454 protein_coding protein_coding MGP_AJ_T0028862.1 MGP_AJ_G0018223.1 mouse_genomes_project 11 48158266 48171747 - Zfp454 protein_coding processed_transcript MGP_AJ_T0028863.1 MGP_AJ_G0018223.1 mouse_genomes_project 11 48161987 48171747 - MGP_AJ_P0028863 Zfp454 protein_coding protein_coding MGP_AJ_T0028864.1 MGP_AJ_G0018223.1 mouse_genomes_project 11 48162199 48171626 - Zfp454 protein_coding processed_transcript MGP_AJ_T0098818.1 MGP_AJ_G0036802.1 mouse_genomes_project 11 67149197 67149341 - Gm22442 scaRNA scaRNA MGP_AJ_T0012692.1 MGP_AJ_G0010787.1 mouse_genomes_project 11 77207577 77208025 + processed_pseudogene processed_pseudogene MGP_AJ_T0029268.1 MGP_AJ_G0018354.1 mouse_genomes_project 11 56505178 56512999 + MGP_AJ_P0029268 Trim17 protein_coding protein_coding MGP_AJ_T0029280.1 MGP_AJ_G0018357.1 mouse_genomes_project 11 56702358 56710716 - MGP_AJ_P0029280 Iba57 protein_coding protein_coding MGP_AJ_T0029281.1 MGP_AJ_G0018357.1 mouse_genomes_project 11 56708097 56710294 - MGP_AJ_P0029281 Iba57 protein_coding protein_coding MGP_AJ_T0029282.1 MGP_AJ_G0018357.1 mouse_genomes_project 11 56708329 56710677 - MGP_AJ_P0029282 Iba57 protein_coding protein_coding MGP_AJ_T0029578.1 MGP_AJ_G0018422.1 mouse_genomes_project 11 60041257 60188294 - MGP_AJ_P0029578 Ncor1 protein_coding protein_coding MGP_AJ_T0029579.1 MGP_AJ_G0018422.1 mouse_genomes_project 11 60041257 60167380 - MGP_AJ_P0029579 Ncor1 protein_coding protein_coding MGP_AJ_T0029580.1 MGP_AJ_G0018422.1 mouse_genomes_project 11 60041534 60105534 - MGP_AJ_P0029580 Ncor1 protein_coding protein_coding MGP_AJ_T0029581.1 MGP_AJ_G0018422.1 mouse_genomes_project 11 60042445 60046067 - MGP_AJ_P0029581 Ncor1 protein_coding protein_coding MGP_AJ_T0029582.1 MGP_AJ_G0018422.1 mouse_genomes_project 11 60042641 60086140 - MGP_AJ_P0029582 Ncor1 protein_coding protein_coding MGP_AJ_T0029583.1 MGP_AJ_G0018422.1 mouse_genomes_project 11 60042641 60167346 - MGP_AJ_P0029583 Ncor1 protein_coding protein_coding MGP_AJ_T0029584.1 MGP_AJ_G0018422.1 mouse_genomes_project 11 60042641 60086917 - MGP_AJ_P0029584 Ncor1 protein_coding protein_coding MGP_AJ_T0029585.1 MGP_AJ_G0018422.1 mouse_genomes_project 11 60050107 60055216 - Ncor1 protein_coding retained_intron MGP_AJ_T0029586.1 MGP_AJ_G0018422.1 mouse_genomes_project 11 60050357 60055340 - Ncor1 protein_coding retained_intron MGP_AJ_T0029587.1 MGP_AJ_G0018422.1 mouse_genomes_project 11 60051976 60056115 - Ncor1 protein_coding retained_intron MGP_AJ_T0029588.1 MGP_AJ_G0018422.1 mouse_genomes_project 11 60065626 60072027 - Ncor1 protein_coding retained_intron MGP_AJ_T0029589.1 MGP_AJ_G0018422.1 mouse_genomes_project 11 60070263 60078515 - Ncor1 protein_coding processed_transcript MGP_AJ_T0029590.1 MGP_AJ_G0018422.1 mouse_genomes_project 11 60071910 60119676 - MGP_AJ_P0029590 Ncor1 protein_coding protein_coding MGP_AJ_T0029591.1 MGP_AJ_G0018422.1 mouse_genomes_project 11 60081030 60096482 - Ncor1 protein_coding processed_transcript MGP_AJ_T0029592.1 MGP_AJ_G0018422.1 mouse_genomes_project 11 60094064 60167380 - Ncor1 protein_coding retained_intron MGP_AJ_T0029593.1 MGP_AJ_G0018422.1 mouse_genomes_project 11 60100335 60110222 - MGP_AJ_P0029593 Ncor1 protein_coding protein_coding MGP_AJ_T0029594.1 MGP_AJ_G0018422.1 mouse_genomes_project 11 60100380 60111860 - MGP_AJ_P0029594 Ncor1 protein_coding protein_coding MGP_AJ_T0029595.1 MGP_AJ_G0018422.1 mouse_genomes_project 11 60100400 60110371 - MGP_AJ_P0029595 Ncor1 protein_coding protein_coding MGP_AJ_T0029596.1 MGP_AJ_G0018422.1 mouse_genomes_project 11 60100402 60188768 - MGP_AJ_P0029596 Ncor1 protein_coding protein_coding MGP_AJ_T0029597.1 MGP_AJ_G0018422.1 mouse_genomes_project 11 60103632 60110280 - Ncor1 protein_coding retained_intron MGP_AJ_T0029598.1 MGP_AJ_G0018422.1 mouse_genomes_project 11 60111773 60167380 - MGP_AJ_P0029598 Ncor1 protein_coding protein_coding MGP_AJ_T0029599.1 MGP_AJ_G0018422.1 mouse_genomes_project 11 60119065 60122209 - Ncor1 protein_coding retained_intron MGP_AJ_T0029600.1 MGP_AJ_G0018422.1 mouse_genomes_project 11 60122202 60128567 - Ncor1 protein_coding retained_intron MGP_AJ_T0029601.1 MGP_AJ_G0018422.1 mouse_genomes_project 11 60128399 60188285 - MGP_AJ_P0029601 Ncor1 protein_coding protein_coding MGP_AJ_T0029602.1 MGP_AJ_G0018422.1 mouse_genomes_project 11 60146964 60189503 - MGP_AJ_P0029602 Ncor1 protein_coding protein_coding MGP_AJ_T0000842.1 MGP_AJ_G0000777.1 mouse_genomes_project 11 15888933 15889800 - TEC TEC MGP_AJ_T0033565.1 MGP_AJ_G0019385.1 mouse_genomes_project 11 114969228 114976531 - MGP_AJ_P0033565 Mrpl38 protein_coding protein_coding MGP_AJ_T0033566.1 MGP_AJ_G0019385.1 mouse_genomes_project 11 114969232 114976438 - Mrpl38 protein_coding retained_intron MGP_AJ_T0033567.1 MGP_AJ_G0019385.1 mouse_genomes_project 11 114970301 114976452 - Mrpl38 protein_coding retained_intron MGP_AJ_T0033568.1 MGP_AJ_G0019385.1 mouse_genomes_project 11 114971575 114972034 - Mrpl38 protein_coding retained_intron MGP_AJ_T0033569.1 MGP_AJ_G0019385.1 mouse_genomes_project 11 114971833 114972205 - Mrpl38 protein_coding retained_intron MGP_AJ_T0033570.1 MGP_AJ_G0019385.1 mouse_genomes_project 11 114975442 114976528 - Mrpl38 protein_coding retained_intron MGP_AJ_T0009672.1 MGP_AJ_G0007794.1 mouse_genomes_project 11 43275943 43276064 + Mir8100 miRNA miRNA MGP_AJ_T0029207.1 MGP_AJ_G0018319.1 mouse_genomes_project 11 55803790 55812011 - MGP_AJ_P0029207 Zfp672 protein_coding protein_coding MGP_AJ_T0029208.1 MGP_AJ_G0018319.1 mouse_genomes_project 11 55803800 55811988 - MGP_AJ_P0029208 Zfp672 protein_coding protein_coding MGP_AJ_T0029209.1 MGP_AJ_G0018319.1 mouse_genomes_project 11 55803891 55811778 - MGP_AJ_P0029209 Zfp672 protein_coding protein_coding MGP_AJ_T0029210.1 MGP_AJ_G0018319.1 mouse_genomes_project 11 55805900 55819020 - MGP_AJ_P0029210 Zfp672 protein_coding protein_coding MGP_AJ_T0029211.1 MGP_AJ_G0018319.1 mouse_genomes_project 11 55806002 55808627 - MGP_AJ_P0029211 Zfp672 protein_coding protein_coding MGP_AJ_T0029212.1 MGP_AJ_G0018319.1 mouse_genomes_project 11 55808376 55811979 - Zfp672 protein_coding processed_transcript MGP_AJ_T0029213.1 MGP_AJ_G0018319.1 mouse_genomes_project 11 55808410 55811979 - Zfp672 protein_coding processed_transcript MGP_AJ_T0029214.1 MGP_AJ_G0018319.1 mouse_genomes_project 11 55815900 55819028 - Zfp672 protein_coding retained_intron MGP_AJ_T0029215.1 MGP_AJ_G0018319.1 mouse_genomes_project 11 55816405 55819028 - MGP_AJ_P0029215 Zfp672 protein_coding protein_coding MGP_AJ_T0030112.1 MGP_AJ_G0018544.1 mouse_genomes_project 11 67820760 67824943 + MGP_AJ_P0030112 Phf23 protein_coding protein_coding MGP_AJ_T0030113.1 MGP_AJ_G0018544.1 mouse_genomes_project 11 67820786 67824946 + MGP_AJ_P0030113 Phf23 protein_coding protein_coding MGP_AJ_T0030114.1 MGP_AJ_G0018544.1 mouse_genomes_project 11 67820904 67823313 + Phf23 protein_coding retained_intron MGP_AJ_T0030115.1 MGP_AJ_G0018544.1 mouse_genomes_project 11 67821641 67823688 + MGP_AJ_P0030115 Phf23 protein_coding protein_coding MGP_AJ_T0030116.1 MGP_AJ_G0018544.1 mouse_genomes_project 11 67821851 67823433 + Phf23 protein_coding processed_transcript MGP_AJ_T0030117.1 MGP_AJ_G0018544.1 mouse_genomes_project 11 67821867 67823334 + Phf23 protein_coding processed_transcript MGP_AJ_T0017193.1 MGP_AJ_G0015149.1 mouse_genomes_project 11 57075684 57084253 + 4933439C10Rik processed_transcript processed_transcript MGP_AJ_T0017194.1 MGP_AJ_G0015149.1 mouse_genomes_project 11 57075707 57081951 + 4933439C10Rik processed_transcript processed_transcript MGP_AJ_T0017195.1 MGP_AJ_G0015149.1 mouse_genomes_project 11 57076119 57076875 + 4933439C10Rik processed_transcript processed_transcript MGP_AJ_T0017196.1 MGP_AJ_G0015149.1 mouse_genomes_project 11 57076175 57080144 + 4933439C10Rik processed_transcript processed_transcript MGP_AJ_T0017197.1 MGP_AJ_G0015149.1 mouse_genomes_project 11 57076690 57080196 + 4933439C10Rik processed_transcript processed_transcript MGP_AJ_T0017198.1 MGP_AJ_G0015149.1 mouse_genomes_project 11 57077664 57081951 + 4933439C10Rik processed_transcript processed_transcript MGP_AJ_T0006315.1 MGP_AJ_G0005267.1 mouse_genomes_project 11 87349203 87351490 - Gm11497 lincRNA lincRNA MGP_AJ_T0003242.1 MGP_AJ_G0003000.1 mouse_genomes_project 11 80824625 80826067 - Gm11423 antisense antisense MGP_AJ_T0003243.1 MGP_AJ_G0003000.1 mouse_genomes_project 11 80824855 80826067 - Gm11423 antisense antisense MGP_AJ_T0031077.1 MGP_AJ_G0018773.1 mouse_genomes_project 11 78158857 78164385 - MGP_AJ_P0031077 Tefm protein_coding protein_coding MGP_AJ_T0031078.1 MGP_AJ_G0018773.1 mouse_genomes_project 11 78158857 78162119 - MGP_AJ_P0031078 Tefm protein_coding protein_coding MGP_AJ_T0031079.1 MGP_AJ_G0018773.1 mouse_genomes_project 11 78160125 78164353 - MGP_AJ_P0031079 Tefm protein_coding protein_coding MGP_AJ_T0030690.1 MGP_AJ_G0018686.1 mouse_genomes_project 11 73568575 73591967 + MGP_AJ_P0030690 Myo1c protein_coding protein_coding MGP_AJ_T0030691.1 MGP_AJ_G0018686.1 mouse_genomes_project 11 73574225 73587644 + Myo1c protein_coding retained_intron MGP_AJ_T0030692.1 MGP_AJ_G0018686.1 mouse_genomes_project 11 73574260 73590693 + MGP_AJ_P0030692 Myo1c protein_coding protein_coding MGP_AJ_T0030693.1 MGP_AJ_G0018686.1 mouse_genomes_project 11 73574274 73575725 + MGP_AJ_P0030693 Myo1c protein_coding protein_coding MGP_AJ_T0030694.1 MGP_AJ_G0018686.1 mouse_genomes_project 11 73579814 73583959 + Myo1c protein_coding retained_intron MGP_AJ_T0030695.1 MGP_AJ_G0018686.1 mouse_genomes_project 11 73583441 73587299 + Myo1c protein_coding retained_intron MGP_AJ_T0030696.1 MGP_AJ_G0018686.1 mouse_genomes_project 11 73586150 73588311 + Myo1c protein_coding retained_intron MGP_AJ_T0030697.1 MGP_AJ_G0018686.1 mouse_genomes_project 11 73588332 73589784 + Myo1c protein_coding retained_intron MGP_AJ_T0033452.1 MGP_AJ_G0019366.1 mouse_genomes_project 11 114431180 114445505 - MGP_AJ_P0033452 Slc25a19 protein_coding protein_coding MGP_AJ_T0033453.1 MGP_AJ_G0019366.1 mouse_genomes_project 11 114432453 114439947 - MGP_AJ_P0033453 Slc25a19 protein_coding protein_coding MGP_AJ_T0033454.1 MGP_AJ_G0019366.1 mouse_genomes_project 11 114433562 114434945 - Slc25a19 protein_coding processed_transcript MGP_AJ_T0033455.1 MGP_AJ_G0019366.1 mouse_genomes_project 11 114434701 114445269 - Slc25a19 protein_coding processed_transcript MGP_AJ_T0033456.1 MGP_AJ_G0019366.1 mouse_genomes_project 11 114440128 114445268 - Slc25a19 protein_coding processed_transcript MGP_AJ_T0033457.1 MGP_AJ_G0019366.1 mouse_genomes_project 11 114440538 114445274 - Slc25a19 protein_coding processed_transcript MGP_AJ_T0033458.1 MGP_AJ_G0019366.1 mouse_genomes_project 11 114441000 114445443 - Slc25a19 protein_coding processed_transcript MGP_AJ_T0033459.1 MGP_AJ_G0019366.1 mouse_genomes_project 11 114441322 114445274 - MGP_AJ_P0033459 Slc25a19 protein_coding protein_coding MGP_AJ_T0033460.1 MGP_AJ_G0019366.1 mouse_genomes_project 11 114441343 114445110 - MGP_AJ_P0033460 Slc25a19 protein_coding protein_coding MGP_AJ_T0033461.1 MGP_AJ_G0019366.1 mouse_genomes_project 11 114441398 114445292 - MGP_AJ_P0033461 Slc25a19 protein_coding protein_coding MGP_AJ_T0006228.1 MGP_AJ_G0005201.1 mouse_genomes_project 11 41765292 41770094 + 4930597A21Rik lincRNA lincRNA MGP_AJ_T0012503.1 MGP_AJ_G0010598.1 mouse_genomes_project 11 15480776 15482022 - processed_pseudogene processed_pseudogene MGP_AJ_T0030025.1 MGP_AJ_G0018526.1 mouse_genomes_project 11 67641493 67642798 - MGP_AJ_P0030025 Spem1 protein_coding protein_coding MGP_AJ_T0028594.1 MGP_AJ_G0018147.1 mouse_genomes_project 11 40749659 40751635 + MGP_AJ_P0028594 4933415A04Rik protein_coding protein_coding MGP_AJ_T0030533.1 MGP_AJ_G0018642.1 mouse_genomes_project 11 71742128 71744894 - MGP_AJ_P0030533 Olfr392 protein_coding protein_coding MGP_AJ_T0030534.1 MGP_AJ_G0018642.1 mouse_genomes_project 11 71742742 71744891 - MGP_AJ_P0030534 Olfr392 protein_coding protein_coding MGP_AJ_T0006249.1 MGP_AJ_G0005220.1 mouse_genomes_project 11 58566231 58574276 + Gm26534 lincRNA lincRNA MGP_AJ_T0006304.1 MGP_AJ_G0005260.1 mouse_genomes_project 11 85941115 85942806 + Mir142hg lincRNA lincRNA MGP_AJ_T0003245.1 MGP_AJ_G0003002.1 mouse_genomes_project 11 83404384 83404833 + Appbp2os antisense pseudogene MGP_AJ_T0003246.1 MGP_AJ_G0003002.1 mouse_genomes_project 11 83404780 83407916 + Appbp2os antisense antisense MGP_AJ_T0027728.1 MGP_AJ_G0017944.1 mouse_genomes_project 11 977252 988239 + Sec14l4 protein_coding processed_transcript MGP_AJ_T0027729.1 MGP_AJ_G0017944.1 mouse_genomes_project 11 977255 989505 + Sec14l4 protein_coding processed_transcript MGP_AJ_T0027730.1 MGP_AJ_G0017944.1 mouse_genomes_project 11 977402 989125 + Sec14l4 protein_coding processed_transcript MGP_AJ_T0027731.1 MGP_AJ_G0017944.1 mouse_genomes_project 11 977572 991799 + Sec14l4 protein_coding processed_transcript MGP_AJ_T0027732.1 MGP_AJ_G0017944.1 mouse_genomes_project 11 977572 993488 + Sec14l4 protein_coding processed_transcript MGP_AJ_T0027733.1 MGP_AJ_G0017944.1 mouse_genomes_project 11 977572 993488 + MGP_AJ_P0027733 Sec14l4 protein_coding protein_coding MGP_AJ_T0027734.1 MGP_AJ_G0017944.1 mouse_genomes_project 11 977631 991799 + Sec14l4 protein_coding processed_transcript MGP_AJ_T0027735.1 MGP_AJ_G0017944.1 mouse_genomes_project 11 987524 991799 + Sec14l4 protein_coding processed_transcript MGP_AJ_T0011313.1 MGP_AJ_G0009435.1 mouse_genomes_project 11 99227080 99227368 - Gm24358 misc_RNA misc_RNA MGP_AJ_T0003168.1 MGP_AJ_G0002938.1 mouse_genomes_project 11 52282570 52287596 + Lyrm7os antisense antisense MGP_AJ_T0029776.1 MGP_AJ_G0018469.1 mouse_genomes_project 11 66208249 66274515 + MGP_AJ_P0029776 Pik3r5 protein_coding protein_coding MGP_AJ_T0029777.1 MGP_AJ_G0018469.1 mouse_genomes_project 11 66208253 66252737 + Pik3r5 protein_coding processed_transcript MGP_AJ_T0029778.1 MGP_AJ_G0018469.1 mouse_genomes_project 11 66208288 66216502 + Pik3r5 protein_coding processed_transcript MGP_AJ_T0029779.1 MGP_AJ_G0018469.1 mouse_genomes_project 11 66249767 66272927 + Pik3r5 protein_coding processed_transcript MGP_AJ_T0029780.1 MGP_AJ_G0018469.1 mouse_genomes_project 11 66251453 66270007 + Pik3r5 protein_coding processed_transcript MGP_AJ_T0028006.1 MGP_AJ_G0018007.1 mouse_genomes_project 11 4186107 4193909 - MGP_AJ_P0028006 Igfbp3 protein_coding protein_coding MGP_AJ_T0028007.1 MGP_AJ_G0018007.1 mouse_genomes_project 11 4187711 4193935 - MGP_AJ_P0028007 Igfbp3 protein_coding protein_coding MGP_AJ_T0031475.1 MGP_AJ_G0018877.1 mouse_genomes_project 11 85922444 85929117 + MGP_AJ_P0031475 Supt4a protein_coding nonsense_mediated_decay MGP_AJ_T0031476.1 MGP_AJ_G0018877.1 mouse_genomes_project 11 85922445 85929117 + MGP_AJ_P0031476 Supt4a protein_coding nonsense_mediated_decay MGP_AJ_T0031477.1 MGP_AJ_G0018877.1 mouse_genomes_project 11 85922492 85929128 + MGP_AJ_P0031477 Supt4a protein_coding protein_coding MGP_AJ_T0032340.1 MGP_AJ_G0019131.1 mouse_genomes_project 11 99078910 99105515 - MGP_AJ_P0032340 Zfp385c protein_coding protein_coding MGP_AJ_T0032341.1 MGP_AJ_G0019131.1 mouse_genomes_project 11 99081324 99106506 - Zfp385c protein_coding processed_transcript MGP_AJ_T0032342.1 MGP_AJ_G0019131.1 mouse_genomes_project 11 99082087 99112456 - MGP_AJ_P0032342 Zfp385c protein_coding protein_coding MGP_AJ_T0032343.1 MGP_AJ_G0019131.1 mouse_genomes_project 11 99091720 99143307 - MGP_AJ_P0032343 Zfp385c protein_coding protein_coding MGP_AJ_T0012492.1 MGP_AJ_G0010587.1 mouse_genomes_project 11 12381532 12391348 + processed_pseudogene processed_pseudogene MGP_AJ_T0030046.1 MGP_AJ_G0018533.1 mouse_genomes_project 11 67702391 67722429 - MGP_AJ_P0030046 Acap1 protein_coding unknown_likely_coding MGP_AJ_T0030047.1 MGP_AJ_G0018533.1 mouse_genomes_project 11 67702399 67711146 - MGP_AJ_P0030047 Acap1 protein_coding protein_coding MGP_AJ_T0030048.1 MGP_AJ_G0018533.1 mouse_genomes_project 11 67702399 67716351 - MGP_AJ_P0030048 Acap1 protein_coding protein_coding MGP_AJ_T0030049.1 MGP_AJ_G0018533.1 mouse_genomes_project 11 67704315 67709250 - Acap1 protein_coding processed_transcript MGP_AJ_T0030050.1 MGP_AJ_G0018533.1 mouse_genomes_project 11 67710188 67711306 - Acap1 protein_coding processed_transcript MGP_AJ_T0028798.1 MGP_AJ_G0018210.1 mouse_genomes_project 11 47444840 47448745 + 3010026O09Rik protein_coding processed_transcript MGP_AJ_T0028799.1 MGP_AJ_G0018210.1 mouse_genomes_project 11 47445245 47471534 + MGP_AJ_P0028799 3010026O09Rik protein_coding protein_coding MGP_AJ_T0028800.1 MGP_AJ_G0018210.1 mouse_genomes_project 11 47445303 47467452 + MGP_AJ_P0028800 3010026O09Rik protein_coding nonsense_mediated_decay MGP_AJ_T0031003.1 MGP_AJ_G0018752.1 mouse_genomes_project 11 76495439 76508888 - MGP_AJ_P0031003 Tnfaip1 protein_coding protein_coding MGP_AJ_T0031004.1 MGP_AJ_G0018752.1 mouse_genomes_project 11 76495439 76508949 - MGP_AJ_P0031004 Tnfaip1 protein_coding protein_coding MGP_AJ_T0032222.1 MGP_AJ_G0019079.1 mouse_genomes_project 11 98026872 98027390 - MGP_AJ_P0032222 Gm11555 protein_coding protein_coding MGP_AJ_T0012742.1 MGP_AJ_G0010837.1 mouse_genomes_project 11 98225899 98226187 - processed_pseudogene processed_pseudogene MGP_AJ_T0033683.1 MGP_AJ_G0019407.1 mouse_genomes_project 11 115627733 115653190 - MGP_AJ_P0033683 Mxra7 protein_coding protein_coding MGP_AJ_T0033684.1 MGP_AJ_G0019407.1 mouse_genomes_project 11 115632508 115653157 - MGP_AJ_P0033684 Mxra7 protein_coding protein_coding MGP_AJ_T0033685.1 MGP_AJ_G0019407.1 mouse_genomes_project 11 115632700 115653147 - MGP_AJ_P0033685 Mxra7 protein_coding nonsense_mediated_decay MGP_AJ_T0012484.1 MGP_AJ_G0010579.1 mouse_genomes_project 11 9107595 9110504 - processed_pseudogene processed_pseudogene MGP_AJ_T0028139.1 MGP_AJ_G0018040.1 mouse_genomes_project 11 17466019 17574189 + MGP_AJ_P0028139 Sertad2 protein_coding protein_coding MGP_AJ_T0028140.1 MGP_AJ_G0018040.1 mouse_genomes_project 11 17553162 17574189 + MGP_AJ_P0028140 Sertad2 protein_coding protein_coding MGP_AJ_T0028141.1 MGP_AJ_G0018040.1 mouse_genomes_project 11 17568322 17570233 + MGP_AJ_P0028141 Sertad2 protein_coding protein_coding MGP_AJ_T0029047.1 MGP_AJ_G0018274.1 mouse_genomes_project 11 51178445 51179352 - MGP_AJ_P0029047 Gm17334 protein_coding protein_coding MGP_AJ_T0009738.1 MGP_AJ_G0007860.1 mouse_genomes_project 11 95457083 95457139 - Mir7235 miRNA miRNA MGP_AJ_T0003214.1 MGP_AJ_G0002975.1 mouse_genomes_project 11 65965812 65969773 - C78197 antisense antisense MGP_AJ_T0009748.1 MGP_AJ_G0007870.1 mouse_genomes_project 11 99487673 99487743 + Mir6928 miRNA miRNA MGP_AJ_T0030488.1 MGP_AJ_G0018623.1 mouse_genomes_project 11 71083606 71089591 + MGP_AJ_P0030488 Tax1bp3 protein_coding protein_coding MGP_AJ_T0030489.1 MGP_AJ_G0018623.1 mouse_genomes_project 11 71083774 71088120 + Tax1bp3 protein_coding processed_transcript MGP_AJ_T0030490.1 MGP_AJ_G0018623.1 mouse_genomes_project 11 71083774 71090584 + Tax1bp3 protein_coding retained_intron MGP_AJ_T0030491.1 MGP_AJ_G0018623.1 mouse_genomes_project 11 71083793 71089486 + MGP_AJ_P0030491 Tax1bp3 protein_coding protein_coding MGP_AJ_T0031152.1 MGP_AJ_G0018796.1 mouse_genomes_project 11 80808892 80810483 + MGP_AJ_P0031152 Zfp830 protein_coding protein_coding MGP_AJ_T0028142.1 MGP_AJ_G0018041.1 mouse_genomes_project 11 17606301 17662478 - MGP_AJ_P0028142 Aftph protein_coding protein_coding MGP_AJ_T0028143.1 MGP_AJ_G0018041.1 mouse_genomes_project 11 17606308 17662471 - MGP_AJ_P0028143 Aftph protein_coding protein_coding MGP_AJ_T0028144.1 MGP_AJ_G0018041.1 mouse_genomes_project 11 17606941 17648010 - MGP_AJ_P0028144 Aftph protein_coding nonsense_mediated_decay MGP_AJ_T0028145.1 MGP_AJ_G0018041.1 mouse_genomes_project 11 17607206 17614042 - Aftph protein_coding retained_intron MGP_AJ_T0028146.1 MGP_AJ_G0018041.1 mouse_genomes_project 11 17607343 17647040 - MGP_AJ_P0028146 Aftph protein_coding protein_coding MGP_AJ_T0028147.1 MGP_AJ_G0018041.1 mouse_genomes_project 11 17617251 17633465 - Aftph protein_coding retained_intron MGP_AJ_T0028148.1 MGP_AJ_G0018041.1 mouse_genomes_project 11 17624444 17633391 - Aftph protein_coding retained_intron MGP_AJ_T0028149.1 MGP_AJ_G0018041.1 mouse_genomes_project 11 17629765 17633371 - Aftph protein_coding retained_intron MGP_AJ_T0029362.1 MGP_AJ_G0018381.1 mouse_genomes_project 11 57690996 57786049 + Rai1 protein_coding processed_transcript MGP_AJ_T0029363.1 MGP_AJ_G0018381.1 mouse_genomes_project 11 57690996 57786047 + MGP_AJ_P0029363 Rai1 protein_coding protein_coding MGP_AJ_T0029364.1 MGP_AJ_G0018381.1 mouse_genomes_project 11 57691160 57772264 + MGP_AJ_P0029364 Rai1 protein_coding protein_coding MGP_AJ_T0029365.1 MGP_AJ_G0018381.1 mouse_genomes_project 11 57726426 57786047 + MGP_AJ_P0029365 Rai1 protein_coding protein_coding MGP_AJ_T0029366.1 MGP_AJ_G0018381.1 mouse_genomes_project 11 57726428 57778866 + MGP_AJ_P0029366 Rai1 protein_coding protein_coding MGP_AJ_T0029367.1 MGP_AJ_G0018381.1 mouse_genomes_project 11 57726603 57727587 + Rai1 protein_coding processed_transcript MGP_AJ_T0029368.1 MGP_AJ_G0018381.1 mouse_genomes_project 11 57762690 57786050 + MGP_AJ_P0029368 Rai1 protein_coding protein_coding MGP_AJ_T0017288.1 MGP_AJ_G0015198.1 mouse_genomes_project 11 119053913 119055689 + Gm11769 processed_transcript processed_transcript MGP_AJ_T0009734.1 MGP_AJ_G0007856.1 mouse_genomes_project 11 94549810 94549912 + Mir196a-1 miRNA miRNA MGP_AJ_T0032586.1 MGP_AJ_G0019185.1 mouse_genomes_project 11 100510321 100537561 - Mpp3 protein_coding processed_transcript MGP_AJ_T0032587.1 MGP_AJ_G0019185.1 mouse_genomes_project 11 100510321 100536722 - MGP_AJ_P0032587 Mpp3 protein_coding protein_coding MGP_AJ_T0032588.1 MGP_AJ_G0019185.1 mouse_genomes_project 11 100510321 100539088 - MGP_AJ_P0032588 Mpp3 protein_coding protein_coding MGP_AJ_T0032589.1 MGP_AJ_G0019185.1 mouse_genomes_project 11 100510321 100537582 - MGP_AJ_P0032589 Mpp3 protein_coding protein_coding MGP_AJ_T0032590.1 MGP_AJ_G0019185.1 mouse_genomes_project 11 100519306 100521077 - Mpp3 protein_coding retained_intron MGP_AJ_T0032591.1 MGP_AJ_G0019185.1 mouse_genomes_project 11 100527999 100537564 - MGP_AJ_P0032591 Mpp3 protein_coding protein_coding MGP_AJ_T0032592.1 MGP_AJ_G0019185.1 mouse_genomes_project 11 100531729 100537561 - Mpp3 protein_coding processed_transcript MGP_AJ_T0032593.1 MGP_AJ_G0019185.1 mouse_genomes_project 11 100534061 100536485 - Mpp3 protein_coding processed_transcript MGP_AJ_T0032594.1 MGP_AJ_G0019185.1 mouse_genomes_project 11 100536014 100537382 - Mpp3 protein_coding processed_transcript MGP_AJ_T0031467.1 MGP_AJ_G0018875.1 mouse_genomes_project 11 85800491 85843478 + MGP_AJ_P0031467 Hsf5 protein_coding protein_coding MGP_AJ_T0031757.1 MGP_AJ_G0018948.1 mouse_genomes_project 11 93536375 93572276 - MGP_AJ_P0031757 Kat7 protein_coding protein_coding MGP_AJ_T0031758.1 MGP_AJ_G0018948.1 mouse_genomes_project 11 93536375 93572276 - MGP_AJ_P0031758 Kat7 protein_coding protein_coding MGP_AJ_T0031759.1 MGP_AJ_G0018948.1 mouse_genomes_project 11 93536375 93571632 - MGP_AJ_P0031759 Kat7 protein_coding protein_coding MGP_AJ_T0031760.1 MGP_AJ_G0018948.1 mouse_genomes_project 11 93536375 93571632 - MGP_AJ_P0031760 Kat7 protein_coding protein_coding MGP_AJ_T0031761.1 MGP_AJ_G0018948.1 mouse_genomes_project 11 93536375 93572231 - MGP_AJ_P0031761 Kat7 protein_coding protein_coding MGP_AJ_T0031762.1 MGP_AJ_G0018948.1 mouse_genomes_project 11 93537440 93544023 - MGP_AJ_P0031762 Kat7 protein_coding protein_coding MGP_AJ_T0031763.1 MGP_AJ_G0018948.1 mouse_genomes_project 11 93544030 93572219 - Kat7 protein_coding processed_transcript MGP_AJ_T0031764.1 MGP_AJ_G0018948.1 mouse_genomes_project 11 93546284 93553194 - Kat7 protein_coding processed_transcript MGP_AJ_T0031765.1 MGP_AJ_G0018948.1 mouse_genomes_project 11 93563692 93572238 - Kat7 protein_coding processed_transcript MGP_AJ_T0031766.1 MGP_AJ_G0018948.1 mouse_genomes_project 11 93565316 93571543 - Kat7 protein_coding processed_transcript MGP_AJ_T0031767.1 MGP_AJ_G0018948.1 mouse_genomes_project 11 93568170 93571599 - Kat7 protein_coding processed_transcript MGP_AJ_T0031955.1 MGP_AJ_G0018999.1 mouse_genomes_project 11 95730388 95819493 + MGP_AJ_P0031955 Arhgap23 protein_coding protein_coding MGP_AJ_T0031956.1 MGP_AJ_G0018999.1 mouse_genomes_project 11 95730460 95808766 + MGP_AJ_P0031956 Arhgap23 protein_coding unknown_likely_coding MGP_AJ_T0031957.1 MGP_AJ_G0018999.1 mouse_genomes_project 11 95752031 95759972 + Arhgap23 protein_coding processed_transcript MGP_AJ_T0031958.1 MGP_AJ_G0018999.1 mouse_genomes_project 11 95767030 95819491 + MGP_AJ_P0031958 Arhgap23 protein_coding protein_coding MGP_AJ_T0031959.1 MGP_AJ_G0018999.1 mouse_genomes_project 11 95769038 95819493 + MGP_AJ_P0031959 Arhgap23 protein_coding nonsense_mediated_decay MGP_AJ_T0031961.1 MGP_AJ_G0018999.1 mouse_genomes_project 11 95808235 95819489 + MGP_AJ_P0031961 Arhgap23 protein_coding protein_coding MGP_AJ_T0030440.1 MGP_AJ_G0018610.1 mouse_genomes_project 11 70387473 70394998 - Spns3 protein_coding processed_transcript MGP_AJ_T0030441.1 MGP_AJ_G0018610.1 mouse_genomes_project 11 70390701 70451172 - MGP_AJ_P0030441 Spns3 protein_coding protein_coding MGP_AJ_T0030442.1 MGP_AJ_G0018610.1 mouse_genomes_project 11 70390706 70450967 - MGP_AJ_P0030442 Spns3 protein_coding protein_coding MGP_AJ_T0012792.1 MGP_AJ_G0010887.1 mouse_genomes_project 11 119925305 119925598 - processed_pseudogene processed_pseudogene MGP_AJ_T0029269.1 MGP_AJ_G0018355.1 mouse_genomes_project 11 56519499 56534093 + MGP_AJ_P0029269 Trim11 protein_coding protein_coding MGP_AJ_T0029270.1 MGP_AJ_G0018355.1 mouse_genomes_project 11 56519521 56534096 + MGP_AJ_P0029270 Trim11 protein_coding protein_coding MGP_AJ_T0029271.1 MGP_AJ_G0018355.1 mouse_genomes_project 11 56519522 56534095 + MGP_AJ_P0029271 Trim11 protein_coding protein_coding MGP_AJ_T0032307.1 MGP_AJ_G0019125.1 mouse_genomes_project 11 98912211 98922337 - MGP_AJ_P0032307 Klhl11 protein_coding protein_coding MGP_AJ_T0029767.1 MGP_AJ_G0018467.1 mouse_genomes_project 11 65735503 65981386 + MGP_AJ_P0029767 Stx8 protein_coding protein_coding MGP_AJ_T0029768.1 MGP_AJ_G0018467.1 mouse_genomes_project 11 65735779 65756914 + MGP_AJ_P0029768 Stx8 protein_coding protein_coding MGP_AJ_T0029769.1 MGP_AJ_G0018467.1 mouse_genomes_project 11 65735790 65743902 + MGP_AJ_P0029769 Stx8 protein_coding protein_coding MGP_AJ_T0029770.1 MGP_AJ_G0018467.1 mouse_genomes_project 11 65735800 65978400 + Stx8 protein_coding processed_transcript MGP_AJ_T0029771.1 MGP_AJ_G0018467.1 mouse_genomes_project 11 65735802 65743775 + Stx8 protein_coding processed_transcript MGP_AJ_T0029772.1 MGP_AJ_G0018467.1 mouse_genomes_project 11 65735816 65742952 + Stx8 protein_coding processed_transcript MGP_AJ_T0031997.1 MGP_AJ_G0019010.1 mouse_genomes_project 11 96126878 96134694 + MGP_AJ_P0031997 Lasp1 protein_coding protein_coding MGP_AJ_T0031998.1 MGP_AJ_G0019010.1 mouse_genomes_project 11 96127053 96167489 + MGP_AJ_P0031998 Lasp1 protein_coding protein_coding MGP_AJ_T0031999.1 MGP_AJ_G0019010.1 mouse_genomes_project 11 96127550 96135174 + Lasp1 protein_coding retained_intron MGP_AJ_T0032000.1 MGP_AJ_G0019010.1 mouse_genomes_project 11 96127716 96162324 + MGP_AJ_P0032000 Lasp1 protein_coding protein_coding MGP_AJ_T0032001.1 MGP_AJ_G0019010.1 mouse_genomes_project 11 96127876 96162312 + MGP_AJ_P0032001 Lasp1 protein_coding protein_coding MGP_AJ_T0032002.1 MGP_AJ_G0019010.1 mouse_genomes_project 11 96128049 96162280 + MGP_AJ_P0032002 Lasp1 protein_coding protein_coding MGP_AJ_T0032003.1 MGP_AJ_G0019010.1 mouse_genomes_project 11 96128175 96152673 + MGP_AJ_P0032003 Lasp1 protein_coding protein_coding MGP_AJ_T0032004.1 MGP_AJ_G0019010.1 mouse_genomes_project 11 96128181 96134774 + MGP_AJ_P0032004 Lasp1 protein_coding protein_coding MGP_AJ_T0032005.1 MGP_AJ_G0019010.1 mouse_genomes_project 11 96129873 96152675 + MGP_AJ_P0032005 Lasp1 protein_coding protein_coding MGP_AJ_T0032006.1 MGP_AJ_G0019010.1 mouse_genomes_project 11 96133047 96164843 + MGP_AJ_P0032006 Lasp1 protein_coding protein_coding MGP_AJ_T0032007.1 MGP_AJ_G0019010.1 mouse_genomes_project 11 96134164 96134755 + MGP_AJ_P0032007 Lasp1 protein_coding protein_coding MGP_AJ_T0032008.1 MGP_AJ_G0019010.1 mouse_genomes_project 11 96134356 96143632 + MGP_AJ_P0032008 Lasp1 protein_coding protein_coding MGP_AJ_T0032009.1 MGP_AJ_G0019010.1 mouse_genomes_project 11 96143097 96152714 + MGP_AJ_P0032009 Lasp1 protein_coding protein_coding MGP_AJ_T0032010.1 MGP_AJ_G0019010.1 mouse_genomes_project 11 96161906 96164929 + Lasp1 protein_coding retained_intron MGP_AJ_T0032011.1 MGP_AJ_G0019010.1 mouse_genomes_project 11 96162136 96163104 + Lasp1 protein_coding retained_intron MGP_AJ_T0032107.1 MGP_AJ_G0019036.1 mouse_genomes_project 11 97038410 97051576 + MGP_AJ_P0032107 Psmd3 protein_coding protein_coding MGP_AJ_T0032108.1 MGP_AJ_G0019036.1 mouse_genomes_project 11 97038421 97048113 + Psmd3 protein_coding retained_intron MGP_AJ_T0032109.1 MGP_AJ_G0019036.1 mouse_genomes_project 11 97038447 97050646 + Psmd3 protein_coding retained_intron MGP_AJ_T0032110.1 MGP_AJ_G0019036.1 mouse_genomes_project 11 97043643 97049437 + MGP_AJ_P0032110 Psmd3 protein_coding protein_coding MGP_AJ_T0032111.1 MGP_AJ_G0019036.1 mouse_genomes_project 11 97046056 97047065 + Psmd3 protein_coding retained_intron MGP_AJ_T0030131.1 MGP_AJ_G0018547.1 mouse_genomes_project 11 67842021 67871277 + MGP_AJ_P0030131 Dlg4 protein_coding protein_coding MGP_AJ_T0030132.1 MGP_AJ_G0018547.1 mouse_genomes_project 11 67842177 67856192 + MGP_AJ_P0030132 Dlg4 protein_coding protein_coding MGP_AJ_T0030133.1 MGP_AJ_G0018547.1 mouse_genomes_project 11 67842211 67852003 + Dlg4 protein_coding processed_transcript MGP_AJ_T0030134.1 MGP_AJ_G0018547.1 mouse_genomes_project 11 67843402 67871277 + MGP_AJ_P0030134 Dlg4 protein_coding protein_coding MGP_AJ_T0030135.1 MGP_AJ_G0018547.1 mouse_genomes_project 11 67843664 67871277 + MGP_AJ_P0030135 Dlg4 protein_coding protein_coding MGP_AJ_T0030136.1 MGP_AJ_G0018547.1 mouse_genomes_project 11 67843800 67856088 + MGP_AJ_P0030136 Dlg4 protein_coding protein_coding MGP_AJ_T0030137.1 MGP_AJ_G0018547.1 mouse_genomes_project 11 67848845 67856070 + MGP_AJ_P0030137 Dlg4 protein_coding protein_coding MGP_AJ_T0030138.1 MGP_AJ_G0018547.1 mouse_genomes_project 11 67851764 67855930 + MGP_AJ_P0030138 Dlg4 protein_coding protein_coding MGP_AJ_T0030139.1 MGP_AJ_G0018547.1 mouse_genomes_project 11 67854680 67863960 + MGP_AJ_P0030139 Dlg4 protein_coding protein_coding MGP_AJ_T0030140.1 MGP_AJ_G0018547.1 mouse_genomes_project 11 67854961 67855849 + MGP_AJ_P0030140 Dlg4 protein_coding protein_coding MGP_AJ_T0030141.1 MGP_AJ_G0018547.1 mouse_genomes_project 11 67855575 67856673 + Dlg4 protein_coding retained_intron MGP_AJ_T0030142.1 MGP_AJ_G0018547.1 mouse_genomes_project 11 67864738 67870364 + MGP_AJ_P0030142 Dlg4 protein_coding nonsense_mediated_decay MGP_AJ_T0030143.1 MGP_AJ_G0018547.1 mouse_genomes_project 11 67869941 67870463 + Dlg4 protein_coding retained_intron MGP_AJ_T0003228.1 MGP_AJ_G0002987.1 mouse_genomes_project 11 74948879 74949839 - Gm12343 antisense antisense MGP_AJ_T0032248.1 MGP_AJ_G0019105.1 mouse_genomes_project 11 98453046 98456913 - MGP_AJ_P0032248 protein_coding protein_coding MGP_AJ_T0012574.1 MGP_AJ_G0010669.1 mouse_genomes_project 11 37804097 37804443 + processed_pseudogene processed_pseudogene MGP_AJ_T0032061.1 MGP_AJ_G0019023.1 mouse_genomes_project 11 96705048 96728092 + MGP_AJ_P0032061 Stard3 protein_coding protein_coding MGP_AJ_T0032062.1 MGP_AJ_G0019023.1 mouse_genomes_project 11 96705112 96723823 + Stard3 protein_coding processed_transcript MGP_AJ_T0032063.1 MGP_AJ_G0019023.1 mouse_genomes_project 11 96705113 96728105 + Stard3 protein_coding processed_transcript MGP_AJ_T0032064.1 MGP_AJ_G0019023.1 mouse_genomes_project 11 96705126 96723828 + Stard3 protein_coding processed_transcript MGP_AJ_T0032065.1 MGP_AJ_G0019023.1 mouse_genomes_project 11 96722512 96725641 + Stard3 protein_coding processed_transcript MGP_AJ_T0032066.1 MGP_AJ_G0019023.1 mouse_genomes_project 11 96723439 96725222 + Stard3 protein_coding processed_transcript MGP_AJ_T0032067.1 MGP_AJ_G0019023.1 mouse_genomes_project 11 96725148 96726341 + Stard3 protein_coding processed_transcript MGP_AJ_T0012679.1 MGP_AJ_G0010774.1 mouse_genomes_project 11 73341326 73341726 + processed_pseudogene processed_pseudogene MGP_AJ_T0003285.1 MGP_AJ_G0003032.1 mouse_genomes_project 11 97154739 97167123 - Gm12359 antisense antisense MGP_AJ_T0003286.1 MGP_AJ_G0003032.1 mouse_genomes_project 11 97155341 97167123 - Gm12359 antisense antisense MGP_AJ_T0003287.1 MGP_AJ_G0003032.1 mouse_genomes_project 11 97161689 97167094 - Gm12359 antisense antisense MGP_AJ_T0029398.1 MGP_AJ_G0018385.1 mouse_genomes_project 11 57990695 58007113 - MGP_AJ_P0029398 Atpaf2 protein_coding protein_coding MGP_AJ_T0029399.1 MGP_AJ_G0018385.1 mouse_genomes_project 11 57991552 58007080 - MGP_AJ_P0029399 Atpaf2 protein_coding nonsense_mediated_decay MGP_AJ_T0029400.1 MGP_AJ_G0018385.1 mouse_genomes_project 11 57993914 58007104 - Atpaf2 protein_coding processed_transcript MGP_AJ_T0029401.1 MGP_AJ_G0018385.1 mouse_genomes_project 11 57995869 58007097 - Atpaf2 protein_coding processed_transcript MGP_AJ_T0029402.1 MGP_AJ_G0018385.1 mouse_genomes_project 11 57997447 58008519 - Atpaf2 protein_coding processed_transcript MGP_AJ_T0029403.1 MGP_AJ_G0018385.1 mouse_genomes_project 11 57999280 58007098 - Atpaf2 protein_coding retained_intron MGP_AJ_T0098542.1 MGP_AJ_G0036526.1 mouse_genomes_project 11 72224624 72224743 + n-R5s71 rRNA rRNA MGP_AJ_T0028548.1 MGP_AJ_G0018136.1 mouse_genomes_project 11 37922354 37929114 - MGP_AJ_P0028548 Ccng1 protein_coding protein_coding MGP_AJ_T0028549.1 MGP_AJ_G0018136.1 mouse_genomes_project 11 37922892 37927741 - Ccng1 protein_coding processed_transcript MGP_AJ_T0030405.1 MGP_AJ_G0018600.1 mouse_genomes_project 11 70099987 70102454 + MGP_AJ_P0030405 Txndc17 protein_coding protein_coding MGP_AJ_T0030406.1 MGP_AJ_G0018600.1 mouse_genomes_project 11 70100055 70101116 + Txndc17 protein_coding retained_intron MGP_AJ_T0029823.1 MGP_AJ_G0018479.1 mouse_genomes_project 11 66757899 66762225 + MGP_AJ_P0029823 Slc25a35 protein_coding protein_coding MGP_AJ_T0029824.1 MGP_AJ_G0018479.1 mouse_genomes_project 11 66757915 66761491 + Slc25a35 protein_coding processed_transcript MGP_AJ_T0029825.1 MGP_AJ_G0018479.1 mouse_genomes_project 11 66757916 66764074 + MGP_AJ_P0029825 Slc25a35 protein_coding protein_coding MGP_AJ_T0028467.1 MGP_AJ_G0018113.1 mouse_genomes_project 11 30200282 30229806 - MGP_AJ_P0028467 Fgf18 protein_coding protein_coding MGP_AJ_T0003310.1 MGP_AJ_G0003052.1 mouse_genomes_project 11 102823539 102832736 - Gm11659 antisense antisense MGP_AJ_T0006172.1 MGP_AJ_G0005152.1 mouse_genomes_project 11 1230539 1232019 + Gm11958 lincRNA lincRNA MGP_AJ_T0030977.1 MGP_AJ_G0018744.1 mouse_genomes_project 11 76320832 76354388 - MGP_AJ_P0030977 Foxn1 protein_coding protein_coding MGP_AJ_T0009765.1 MGP_AJ_G0007887.1 mouse_genomes_project 11 114619645 114619708 + Mir5621 miRNA miRNA MGP_AJ_T0029726.1 MGP_AJ_G0018456.1 mouse_genomes_project 11 64958754 64984911 + MGP_AJ_P0029726 Myh1 protein_coding protein_coding MGP_AJ_T0029727.1 MGP_AJ_G0018456.1 mouse_genomes_project 11 64958813 64984833 + MGP_AJ_P0029727 Myh1 protein_coding protein_coding MGP_AJ_T0029728.1 MGP_AJ_G0018456.1 mouse_genomes_project 11 64958840 64960959 + MGP_AJ_P0029728 Myh1 protein_coding protein_coding MGP_AJ_T0029729.1 MGP_AJ_G0018456.1 mouse_genomes_project 11 64959109 64984909 + MGP_AJ_P0029729 Myh1 protein_coding protein_coding MGP_AJ_T0006368.1 MGP_AJ_G0005306.1 mouse_genomes_project 11 115915937 115918103 + Snhg20 lincRNA lincRNA MGP_AJ_T0006369.1 MGP_AJ_G0005306.1 mouse_genomes_project 11 115915937 115916605 + Snhg20 lincRNA lincRNA MGP_AJ_T0006370.1 MGP_AJ_G0005306.1 mouse_genomes_project 11 115915949 115918102 + Snhg20 lincRNA lincRNA MGP_AJ_T0032946.1 MGP_AJ_G0019253.1 mouse_genomes_project 11 103961678 104048579 - MGP_AJ_P0032946 March10 protein_coding protein_coding MGP_AJ_T0032947.1 MGP_AJ_G0019253.1 mouse_genomes_project 11 103964624 103972298 - March10 protein_coding processed_transcript MGP_AJ_T0032948.1 MGP_AJ_G0019253.1 mouse_genomes_project 11 103997129 104008965 - MGP_AJ_P0032948 March10 protein_coding protein_coding MGP_AJ_T0032949.1 MGP_AJ_G0019253.1 mouse_genomes_project 11 104002086 104050919 - MGP_AJ_P0032949 March10 protein_coding protein_coding MGP_AJ_T0029773.1 MGP_AJ_G0018468.1 mouse_genomes_project 11 65983601 66161727 - MGP_AJ_P0029773 Ntn1 protein_coding protein_coding MGP_AJ_T0029774.1 MGP_AJ_G0018468.1 mouse_genomes_project 11 65983601 66176424 - MGP_AJ_P0029774 Ntn1 protein_coding protein_coding MGP_AJ_T0029775.1 MGP_AJ_G0018468.1 mouse_genomes_project 11 66160544 66161913 - MGP_AJ_P0029775 Ntn1 protein_coding protein_coding MGP_AJ_T0009711.1 MGP_AJ_G0007833.1 mouse_genomes_project 11 72783730 72783798 - Mir6926 miRNA miRNA MGP_AJ_T0031606.1 MGP_AJ_G0018913.1 mouse_genomes_project 11 92114722 92177552 + MGP_AJ_P0031606 Mbtd1 protein_coding protein_coding MGP_AJ_T0031607.1 MGP_AJ_G0018913.1 mouse_genomes_project 11 92114736 92152254 + MGP_AJ_P0031607 Mbtd1 protein_coding protein_coding MGP_AJ_T0031608.1 MGP_AJ_G0018913.1 mouse_genomes_project 11 92114976 92152264 + Mbtd1 protein_coding processed_transcript MGP_AJ_T0031609.1 MGP_AJ_G0018913.1 mouse_genomes_project 11 92115077 92139703 + Mbtd1 protein_coding processed_transcript MGP_AJ_T0031610.1 MGP_AJ_G0018913.1 mouse_genomes_project 11 92115078 92141160 + Mbtd1 protein_coding processed_transcript MGP_AJ_T0031611.1 MGP_AJ_G0018913.1 mouse_genomes_project 11 92115087 92175895 + MGP_AJ_P0031611 Mbtd1 protein_coding protein_coding MGP_AJ_T0031612.1 MGP_AJ_G0018913.1 mouse_genomes_project 11 92115089 92177552 + MGP_AJ_P0031612 Mbtd1 protein_coding protein_coding MGP_AJ_T0031613.1 MGP_AJ_G0018913.1 mouse_genomes_project 11 92115748 92161200 + MGP_AJ_P0031613 Mbtd1 protein_coding protein_coding MGP_AJ_T0031614.1 MGP_AJ_G0018913.1 mouse_genomes_project 11 92135986 92163337 + MGP_AJ_P0031614 Mbtd1 protein_coding protein_coding MGP_AJ_T0031615.1 MGP_AJ_G0018913.1 mouse_genomes_project 11 92140744 92143179 + Mbtd1 protein_coding processed_transcript MGP_AJ_T0031616.1 MGP_AJ_G0018913.1 mouse_genomes_project 11 92143173 92163337 + Mbtd1 protein_coding processed_transcript MGP_AJ_T0031617.1 MGP_AJ_G0018913.1 mouse_genomes_project 11 92148539 92163043 + Mbtd1 protein_coding processed_transcript MGP_AJ_T0031618.1 MGP_AJ_G0018913.1 mouse_genomes_project 11 92153840 92157087 + Mbtd1 protein_coding processed_transcript MGP_AJ_T0031619.1 MGP_AJ_G0018913.1 mouse_genomes_project 11 92156308 92167780 + Mbtd1 protein_coding processed_transcript MGP_AJ_T0028561.1 MGP_AJ_G0018139.1 mouse_genomes_project 11 39447444 39461923 - MGP_AJ_P0028561 Gabra6 protein_coding protein_coding MGP_AJ_T0028562.1 MGP_AJ_G0018139.1 mouse_genomes_project 11 39447445 39461925 - MGP_AJ_P0028562 Gabra6 protein_coding protein_coding MGP_AJ_T0028563.1 MGP_AJ_G0018139.1 mouse_genomes_project 11 39448267 39461946 - MGP_AJ_P0028563 Gabra6 protein_coding protein_coding MGP_AJ_T0033583.1 MGP_AJ_G0019387.1 mouse_genomes_project 11 115009718 115021162 - Acox1 protein_coding processed_transcript MGP_AJ_T0033584.1 MGP_AJ_G0019387.1 mouse_genomes_project 11 115009718 115037897 - MGP_AJ_P0033584 Acox1 protein_coding protein_coding MGP_AJ_T0033585.1 MGP_AJ_G0019387.1 mouse_genomes_project 11 115009718 115038141 - MGP_AJ_P0033585 Acox1 protein_coding protein_coding MGP_AJ_T0033586.1 MGP_AJ_G0019387.1 mouse_genomes_project 11 115009718 115028473 - MGP_AJ_P0033586 Acox1 protein_coding protein_coding MGP_AJ_T0033587.1 MGP_AJ_G0019387.1 mouse_genomes_project 11 115013177 115020302 - Acox1 protein_coding processed_transcript MGP_AJ_T0033588.1 MGP_AJ_G0019387.1 mouse_genomes_project 11 115018042 115021312 - Acox1 protein_coding processed_transcript MGP_AJ_T0033589.1 MGP_AJ_G0019387.1 mouse_genomes_project 11 115027926 115037825 - Acox1 protein_coding processed_transcript MGP_AJ_T0012456.1 MGP_AJ_G0010551.1 mouse_genomes_project 11 548527 548899 - processed_pseudogene processed_pseudogene MGP_AJ_T0030748.1 MGP_AJ_G0018698.1 mouse_genomes_project 11 74190420 74197334 + MGP_AJ_P0030748 Rnmtl1 protein_coding protein_coding MGP_AJ_T0030749.1 MGP_AJ_G0018698.1 mouse_genomes_project 11 74190441 74191589 + Rnmtl1 protein_coding retained_intron MGP_AJ_T0030750.1 MGP_AJ_G0018698.1 mouse_genomes_project 11 74195925 74197222 + Rnmtl1 protein_coding processed_transcript MGP_AJ_T0030315.1 MGP_AJ_G0018584.1 mouse_genomes_project 11 68648420 68669065 - MGP_AJ_P0030315 Scimp protein_coding protein_coding MGP_AJ_T0009732.1 MGP_AJ_G0007854.1 mouse_genomes_project 11 90246727 90246796 - Gm22702 miRNA miRNA MGP_AJ_T0031900.1 MGP_AJ_G0018985.1 mouse_genomes_project 11 95237573 95247032 - Pnpo protein_coding processed_transcript MGP_AJ_T0031901.1 MGP_AJ_G0018985.1 mouse_genomes_project 11 95237574 95247121 - MGP_AJ_P0031901 Pnpo protein_coding protein_coding MGP_AJ_T0030080.1 MGP_AJ_G0018538.1 mouse_genomes_project 11 67757652 67762774 + MGP_AJ_P0030080 Ybx2 protein_coding protein_coding MGP_AJ_T0030081.1 MGP_AJ_G0018538.1 mouse_genomes_project 11 67758004 67763275 + MGP_AJ_P0030081 Ybx2 protein_coding protein_coding MGP_AJ_T0030082.1 MGP_AJ_G0018538.1 mouse_genomes_project 11 67761524 67762340 + Ybx2 protein_coding retained_intron MGP_AJ_T0030083.1 MGP_AJ_G0018538.1 mouse_genomes_project 11 67762221 67763273 + Ybx2 protein_coding retained_intron MGP_AJ_T0031879.1 MGP_AJ_G0018982.1 mouse_genomes_project 11 95139893 95141620 + Copz2 protein_coding retained_intron MGP_AJ_T0031880.1 MGP_AJ_G0018982.1 mouse_genomes_project 11 95139899 95153131 + MGP_AJ_P0031880 Copz2 protein_coding protein_coding MGP_AJ_T0031881.1 MGP_AJ_G0018982.1 mouse_genomes_project 11 95139904 95144187 + MGP_AJ_P0031881 Copz2 protein_coding nonsense_mediated_decay MGP_AJ_T0031882.1 MGP_AJ_G0018982.1 mouse_genomes_project 11 95143933 95146973 + Copz2 protein_coding retained_intron MGP_AJ_T0031883.1 MGP_AJ_G0018982.1 mouse_genomes_project 11 95144164 95153131 + MGP_AJ_P0031883 Copz2 protein_coding nonsense_mediated_decay MGP_AJ_T0031208.1 MGP_AJ_G0018812.1 mouse_genomes_project 11 81407268 81441124 + MGP_AJ_P0031208 Ap2b1 protein_coding protein_coding MGP_AJ_T0031209.1 MGP_AJ_G0018812.1 mouse_genomes_project 11 81410724 81515062 + MGP_AJ_P0031209 Ap2b1 protein_coding protein_coding MGP_AJ_T0031210.1 MGP_AJ_G0018812.1 mouse_genomes_project 11 81410944 81452894 + Ap2b1 protein_coding retained_intron MGP_AJ_T0031211.1 MGP_AJ_G0018812.1 mouse_genomes_project 11 81410975 81508633 + MGP_AJ_P0031211 Ap2b1 protein_coding protein_coding MGP_AJ_T0031212.1 MGP_AJ_G0018812.1 mouse_genomes_project 11 81411015 81513038 + MGP_AJ_P0031212 Ap2b1 protein_coding protein_coding MGP_AJ_T0031213.1 MGP_AJ_G0018812.1 mouse_genomes_project 11 81411187 81424647 + MGP_AJ_P0031213 Ap2b1 protein_coding protein_coding MGP_AJ_T0031214.1 MGP_AJ_G0018812.1 mouse_genomes_project 11 81416481 81512670 + MGP_AJ_P0031214 Ap2b1 protein_coding protein_coding MGP_AJ_T0032364.1 MGP_AJ_G0019138.1 mouse_genomes_project 11 99218511 99223508 - MGP_AJ_P0032364 Ghdc protein_coding protein_coding MGP_AJ_T0032365.1 MGP_AJ_G0019138.1 mouse_genomes_project 11 99219288 99221262 - Ghdc protein_coding processed_transcript MGP_AJ_T0032366.1 MGP_AJ_G0019138.1 mouse_genomes_project 11 99222240 99223493 - MGP_AJ_P0032366 Ghdc protein_coding protein_coding MGP_AJ_T0032179.1 MGP_AJ_G0019050.1 mouse_genomes_project 11 97429771 97453410 - MGP_AJ_P0032179 Tns4 protein_coding protein_coding MGP_AJ_T0032180.1 MGP_AJ_G0019050.1 mouse_genomes_project 11 97432264 97438020 - Tns4 protein_coding processed_transcript MGP_AJ_T0032181.1 MGP_AJ_G0019050.1 mouse_genomes_project 11 97434837 97439497 - Tns4 protein_coding retained_intron MGP_AJ_T0032182.1 MGP_AJ_G0019050.1 mouse_genomes_project 11 97449575 97453389 - Tns4 protein_coding retained_intron MGP_AJ_T0031344.1 MGP_AJ_G0018847.1 mouse_genomes_project 11 83353410 83404740 - MGP_AJ_P0031344 Appbp2 protein_coding protein_coding MGP_AJ_T0032722.1 MGP_AJ_G0019205.1 mouse_genomes_project 11 100981205 100997906 - MGP_AJ_P0032722 Itga2b protein_coding protein_coding MGP_AJ_T0032723.1 MGP_AJ_G0019205.1 mouse_genomes_project 11 100981212 100984128 - Itga2b protein_coding processed_transcript MGP_AJ_T0032724.1 MGP_AJ_G0019205.1 mouse_genomes_project 11 100983776 100985320 - Itga2b protein_coding processed_transcript MGP_AJ_T0032725.1 MGP_AJ_G0019205.1 mouse_genomes_project 11 100983834 100986566 - Itga2b protein_coding processed_transcript MGP_AJ_T0032726.1 MGP_AJ_G0019205.1 mouse_genomes_project 11 100984409 100995222 - Itga2b protein_coding processed_transcript MGP_AJ_T0032727.1 MGP_AJ_G0019205.1 mouse_genomes_project 11 100985199 100986360 - Itga2b protein_coding processed_transcript MGP_AJ_T0032728.1 MGP_AJ_G0019205.1 mouse_genomes_project 11 100985510 100988836 - Itga2b protein_coding processed_transcript MGP_AJ_T0032729.1 MGP_AJ_G0019205.1 mouse_genomes_project 11 100989213 100989939 - Itga2b protein_coding processed_transcript MGP_AJ_T0032730.1 MGP_AJ_G0019205.1 mouse_genomes_project 11 100994308 100994978 - Itga2b protein_coding processed_transcript MGP_AJ_T0032731.1 MGP_AJ_G0019205.1 mouse_genomes_project 11 100995822 100998145 - Itga2b protein_coding processed_transcript MGP_AJ_T0003138.1 MGP_AJ_G0002910.1 mouse_genomes_project 11 30794757 30796772 + Gm12119 antisense antisense MGP_AJ_T0032032.1 MGP_AJ_G0019016.1 mouse_genomes_project 11 96359647 96360838 + Rpl19 protein_coding retained_intron MGP_AJ_T0032033.1 MGP_AJ_G0019016.1 mouse_genomes_project 11 96359676 96363173 + MGP_AJ_P0032033 Rpl19 protein_coding protein_coding MGP_AJ_T0029634.1 MGP_AJ_G0018431.1 mouse_genomes_project 11 60496121 60533242 - Zfp286 protein_coding processed_transcript MGP_AJ_T0029635.1 MGP_AJ_G0018431.1 mouse_genomes_project 11 60522661 60533724 - MGP_AJ_P0029635 Zfp286 protein_coding protein_coding MGP_AJ_T0029636.1 MGP_AJ_G0018431.1 mouse_genomes_project 11 60523879 60533685 - MGP_AJ_P0029636 Zfp286 protein_coding protein_coding MGP_AJ_T0029637.1 MGP_AJ_G0018431.1 mouse_genomes_project 11 60525004 60533679 - Zfp286 protein_coding processed_transcript MGP_AJ_T0029638.1 MGP_AJ_G0018431.1 mouse_genomes_project 11 60525013 60528422 - Zfp286 protein_coding processed_transcript MGP_AJ_T0029639.1 MGP_AJ_G0018431.1 mouse_genomes_project 11 60527786 60533671 - Zfp286 protein_coding processed_transcript MGP_AJ_T0029640.1 MGP_AJ_G0018431.1 mouse_genomes_project 11 60527786 60533648 - Zfp286 protein_coding processed_transcript MGP_AJ_T0029641.1 MGP_AJ_G0018431.1 mouse_genomes_project 11 60531836 60533685 - Zfp286 protein_coding processed_transcript MGP_AJ_T0029003.1 MGP_AJ_G0018263.1 mouse_genomes_project 11 50858616 50869167 + MGP_AJ_P0029003 Shroom1 protein_coding protein_coding MGP_AJ_T0029004.1 MGP_AJ_G0018263.1 mouse_genomes_project 11 50858641 50868699 + MGP_AJ_P0029004 Shroom1 protein_coding protein_coding MGP_AJ_T0029005.1 MGP_AJ_G0018263.1 mouse_genomes_project 11 50858657 50869156 + Shroom1 protein_coding retained_intron MGP_AJ_T0029006.1 MGP_AJ_G0018263.1 mouse_genomes_project 11 50858660 50868902 + Shroom1 protein_coding retained_intron MGP_AJ_T0029007.1 MGP_AJ_G0018263.1 mouse_genomes_project 11 50858690 50868703 + MGP_AJ_P0029007 Shroom1 protein_coding protein_coding MGP_AJ_T0029008.1 MGP_AJ_G0018263.1 mouse_genomes_project 11 50866896 50867254 + Shroom1 protein_coding processed_transcript MGP_AJ_T0012609.1 MGP_AJ_G0010704.1 mouse_genomes_project 11 51139757 51140110 + processed_pseudogene processed_pseudogene MGP_AJ_T0003169.1 MGP_AJ_G0002939.1 mouse_genomes_project 11 52611508 52614570 + Slc36a3os antisense antisense MGP_AJ_T0098895.1 MGP_AJ_G0036878.1 mouse_genomes_project 11 266976 268315 - Gm11948 sense_intronic sense_intronic MGP_AJ_T0029267.1 MGP_AJ_G0018353.1 mouse_genomes_project 11 56496193 56498339 + MGP_AJ_P0029267 Hist3h2a protein_coding protein_coding MGP_AJ_T0032324.1 MGP_AJ_G0019129.1 mouse_genomes_project 11 99034400 99036369 - Dnajc7 protein_coding processed_transcript MGP_AJ_T0032325.1 MGP_AJ_G0019129.1 mouse_genomes_project 11 99034400 99071537 - MGP_AJ_P0032325 Dnajc7 protein_coding protein_coding MGP_AJ_T0032326.1 MGP_AJ_G0019129.1 mouse_genomes_project 11 99034846 99037075 - Dnajc7 protein_coding processed_transcript MGP_AJ_T0032327.1 MGP_AJ_G0019129.1 mouse_genomes_project 11 99035922 99042591 - Dnajc7 protein_coding processed_transcript MGP_AJ_T0032328.1 MGP_AJ_G0019129.1 mouse_genomes_project 11 99042449 99070945 - MGP_AJ_P0032328 Dnajc7 protein_coding protein_coding MGP_AJ_T0032329.1 MGP_AJ_G0019129.1 mouse_genomes_project 11 99042456 99070966 - Dnajc7 protein_coding processed_transcript MGP_AJ_T0032330.1 MGP_AJ_G0019129.1 mouse_genomes_project 11 99042581 99048296 - Dnajc7 protein_coding processed_transcript MGP_AJ_T0032331.1 MGP_AJ_G0019129.1 mouse_genomes_project 11 99044527 99064874 - MGP_AJ_P0032331 Dnajc7 protein_coding protein_coding MGP_AJ_T0032332.1 MGP_AJ_G0019129.1 mouse_genomes_project 11 99049014 99070948 - Dnajc7 protein_coding processed_transcript MGP_AJ_T0032333.1 MGP_AJ_G0019129.1 mouse_genomes_project 11 99049923 99071028 - Dnajc7 protein_coding processed_transcript MGP_AJ_T0029800.1 MGP_AJ_G0018474.1 mouse_genomes_project 11 66606663 66640377 - MGP_AJ_P0029800 Ndel1 protein_coding protein_coding MGP_AJ_T0029801.1 MGP_AJ_G0018474.1 mouse_genomes_project 11 66607338 66625316 - Ndel1 protein_coding processed_transcript MGP_AJ_T0029802.1 MGP_AJ_G0018474.1 mouse_genomes_project 11 66614752 66659038 - MGP_AJ_P0029802 Ndel1 protein_coding protein_coding MGP_AJ_T0029803.1 MGP_AJ_G0018474.1 mouse_genomes_project 11 66614764 66640283 - MGP_AJ_P0029803 Ndel1 protein_coding protein_coding MGP_AJ_T0029804.1 MGP_AJ_G0018474.1 mouse_genomes_project 11 66621698 66647303 - Ndel1 protein_coding processed_transcript MGP_AJ_T0029805.1 MGP_AJ_G0018474.1 mouse_genomes_project 11 66625309 66652208 - Ndel1 protein_coding processed_transcript MGP_AJ_T0012577.1 MGP_AJ_G0010672.1 mouse_genomes_project 11 38931122 38931454 - processed_pseudogene processed_pseudogene MGP_AJ_T0030045.1 MGP_AJ_G0018532.1 mouse_genomes_project 11 67699095 67702239 - MGP_AJ_P0030045 Kctd11 protein_coding protein_coding MGP_AJ_T0033838.1 MGP_AJ_G0019439.1 mouse_genomes_project 11 117882464 117887118 + MGP_AJ_P0033838 Enpp7 protein_coding protein_coding MGP_AJ_T0033839.1 MGP_AJ_G0019439.1 mouse_genomes_project 11 117882492 117886942 + MGP_AJ_P0033839 Enpp7 protein_coding protein_coding MGP_AJ_T0029807.1 MGP_AJ_G0018476.1 mouse_genomes_project 11 66688333 66692261 + MGP_AJ_P0029807 Rpl26 protein_coding protein_coding MGP_AJ_T0029808.1 MGP_AJ_G0018476.1 mouse_genomes_project 11 66688360 66692237 + MGP_AJ_P0029808 Rpl26 protein_coding protein_coding MGP_AJ_T0029809.1 MGP_AJ_G0018476.1 mouse_genomes_project 11 66688377 66690861 + MGP_AJ_P0029809 Rpl26 protein_coding protein_coding MGP_AJ_T0029810.1 MGP_AJ_G0018476.1 mouse_genomes_project 11 66688385 66692260 + MGP_AJ_P0029810 Rpl26 protein_coding protein_coding MGP_AJ_T0029811.1 MGP_AJ_G0018476.1 mouse_genomes_project 11 66690411 66692260 + Rpl26 protein_coding retained_intron MGP_AJ_T0029812.1 MGP_AJ_G0018476.1 mouse_genomes_project 11 66690775 66694850 + Rpl26 protein_coding processed_transcript MGP_AJ_T0031291.1 MGP_AJ_G0018837.1 mouse_genomes_project 11 82671187 82678420 - MGP_AJ_P0031291 Lhx1 protein_coding protein_coding MGP_AJ_T0031292.1 MGP_AJ_G0018837.1 mouse_genomes_project 11 82672337 82675216 - MGP_AJ_P0031292 Lhx1 protein_coding protein_coding MGP_AJ_T0031293.1 MGP_AJ_G0018837.1 mouse_genomes_project 11 82672602 82674952 - Lhx1 protein_coding retained_intron MGP_AJ_T0031294.1 MGP_AJ_G0018837.1 mouse_genomes_project 11 82674780 82675597 - MGP_AJ_P0031294 Lhx1 protein_coding protein_coding MGP_AJ_T0029619.1 MGP_AJ_G0018427.1 mouse_genomes_project 11 60337701 60386497 - MGP_AJ_P0029619 Lrrc75a protein_coding protein_coding MGP_AJ_T0029620.1 MGP_AJ_G0018427.1 mouse_genomes_project 11 60338640 60386014 - Lrrc75a protein_coding processed_transcript MGP_AJ_T0029621.1 MGP_AJ_G0018427.1 mouse_genomes_project 11 60338844 60386023 - Lrrc75a protein_coding processed_transcript MGP_AJ_T0029932.1 MGP_AJ_G0018501.1 mouse_genomes_project 11 67198049 67199764 - MGP_AJ_P0029932 Tmem88 protein_coding protein_coding MGP_AJ_T0032230.1 MGP_AJ_G0019087.1 mouse_genomes_project 11 98166823 98175491 - MGP_AJ_P0032230 protein_coding protein_coding MGP_AJ_T0030634.1 MGP_AJ_G0018675.1 mouse_genomes_project 11 73264148 73318436 + MGP_AJ_P0030634 Smyd4 protein_coding protein_coding MGP_AJ_T0030635.1 MGP_AJ_G0018675.1 mouse_genomes_project 11 73264210 73295791 + Smyd4 protein_coding retained_intron MGP_AJ_T0030636.1 MGP_AJ_G0018675.1 mouse_genomes_project 11 73300196 73303400 + Smyd4 protein_coding processed_transcript MGP_AJ_T0030637.1 MGP_AJ_G0018675.1 mouse_genomes_project 11 73312340 73313365 + Smyd4 protein_coding processed_transcript MGP_AJ_T0003308.1 MGP_AJ_G0003050.1 mouse_genomes_project 11 101908543 101913935 + Arhgap27os2 antisense antisense MGP_AJ_T0003115.1 MGP_AJ_G0002894.1 mouse_genomes_project 11 3440908 3456179 + Gm11973 antisense antisense MGP_AJ_T0003116.1 MGP_AJ_G0002894.1 mouse_genomes_project 11 3440948 3458486 + Gm11973 antisense antisense MGP_AJ_T0003117.1 MGP_AJ_G0002894.1 mouse_genomes_project 11 3440960 3458486 + Gm11973 antisense antisense MGP_AJ_T0012548.1 MGP_AJ_G0010643.1 mouse_genomes_project 11 26832143 26832615 + processed_pseudogene processed_pseudogene MGP_AJ_T0012674.1 MGP_AJ_G0010769.1 mouse_genomes_project 11 71758528 71760355 - processed_pseudogene processed_pseudogene MGP_AJ_T0012707.1 MGP_AJ_G0010802.1 mouse_genomes_project 11 83384633 83385091 + processed_pseudogene processed_pseudogene MGP_AJ_T0033611.1 MGP_AJ_G0019393.1 mouse_genomes_project 11 115173457 115178312 - MGP_AJ_P0033611 Foxj1 protein_coding protein_coding MGP_AJ_T0031409.1 MGP_AJ_G0018860.1 mouse_genomes_project 11 84862633 84872227 + MGP_AJ_P0031409 Ptrh2 protein_coding protein_coding MGP_AJ_T0031410.1 MGP_AJ_G0018860.1 mouse_genomes_project 11 84862633 84872227 + MGP_AJ_P0031410 Ptrh2 protein_coding protein_coding MGP_AJ_T0030409.1 MGP_AJ_G0018602.1 mouse_genomes_project 11 70134453 70160851 - MGP_AJ_P0030409 Slc13a5 protein_coding protein_coding MGP_AJ_T0030410.1 MGP_AJ_G0018602.1 mouse_genomes_project 11 70154596 70160851 - MGP_AJ_P0030410 Slc13a5 protein_coding protein_coding MGP_AJ_T0030411.1 MGP_AJ_G0018602.1 mouse_genomes_project 11 70155901 70161471 - MGP_AJ_P0030411 Slc13a5 protein_coding protein_coding MGP_AJ_T0032213.1 MGP_AJ_G0019070.1 mouse_genomes_project 11 97953665 97954258 - MGP_AJ_P0032213 Krtap1-4 protein_coding protein_coding MGP_AJ_T0006266.1 MGP_AJ_G0005233.1 mouse_genomes_project 11 68509349 68511065 - Gm12319 lincRNA lincRNA MGP_AJ_T0031257.1 MGP_AJ_G0018830.1 mouse_genomes_project 11 82092393 82114171 + MGP_AJ_P0031257 Ddx52 protein_coding protein_coding MGP_AJ_T0031258.1 MGP_AJ_G0018830.1 mouse_genomes_project 11 82097352 82103266 + Ddx52 protein_coding processed_transcript MGP_AJ_T0030073.1 MGP_AJ_G0018536.1 mouse_genomes_project 11 67735559 67738248 + MGP_AJ_P0030073 Gps2 protein_coding protein_coding MGP_AJ_T0030074.1 MGP_AJ_G0018536.1 mouse_genomes_project 11 67735721 67738262 + MGP_AJ_P0030074 Gps2 protein_coding protein_coding MGP_AJ_T0030075.1 MGP_AJ_G0018536.1 mouse_genomes_project 11 67735863 67738263 + MGP_AJ_P0030075 Gps2 protein_coding protein_coding MGP_AJ_T0030076.1 MGP_AJ_G0018536.1 mouse_genomes_project 11 67736516 67737552 + Gps2 protein_coding processed_transcript MGP_AJ_T0030077.1 MGP_AJ_G0018536.1 mouse_genomes_project 11 67737712 67738228 + MGP_AJ_P0030077 Gps2 protein_coding protein_coding MGP_AJ_T0032034.1 MGP_AJ_G0019017.1 mouse_genomes_project 11 96369267 96386859 - MGP_AJ_P0032034 Stac2 protein_coding protein_coding MGP_AJ_T0032035.1 MGP_AJ_G0019017.1 mouse_genomes_project 11 96372757 96376918 - MGP_AJ_P0032035 Stac2 protein_coding protein_coding MGP_AJ_T0012519.1 MGP_AJ_G0010614.1 mouse_genomes_project 11 18222901 18223202 + processed_pseudogene processed_pseudogene MGP_AJ_T0099341.1 MGP_AJ_G0037307.1 mouse_genomes_project 11 70784028 70784190 + Gm26121 snRNA snRNA MGP_AJ_T0006236.1 MGP_AJ_G0005208.1 mouse_genomes_project 11 47509547 47563046 + Gm26542 lincRNA lincRNA MGP_AJ_T0009701.1 MGP_AJ_G0007823.1 mouse_genomes_project 11 67805744 67805867 + Gm44349 miRNA miRNA MGP_AJ_T0006276.1 MGP_AJ_G0005241.1 mouse_genomes_project 11 69820001 69831646 - 4930401O10Rik lincRNA lincRNA MGP_AJ_T0032266.1 MGP_AJ_G0019115.1 mouse_genomes_project 11 98691193 98696010 - MGP_AJ_P0032266 Krt17 protein_coding protein_coding MGP_AJ_T0028583.1 MGP_AJ_G0018144.1 mouse_genomes_project 11 40590002 40594534 + MGP_AJ_P0028583 Slu7 protein_coding protein_coding MGP_AJ_T0028584.1 MGP_AJ_G0018144.1 mouse_genomes_project 11 40590002 40601644 + MGP_AJ_P0028584 Slu7 protein_coding protein_coding MGP_AJ_T0028585.1 MGP_AJ_G0018144.1 mouse_genomes_project 11 40590017 40604240 + MGP_AJ_P0028585 Slu7 protein_coding protein_coding MGP_AJ_T0028586.1 MGP_AJ_G0018144.1 mouse_genomes_project 11 40593600 40604240 + MGP_AJ_P0028586 Slu7 protein_coding protein_coding MGP_AJ_T0028587.1 MGP_AJ_G0018144.1 mouse_genomes_project 11 40593632 40595467 + Slu7 protein_coding processed_transcript MGP_AJ_T0028588.1 MGP_AJ_G0018144.1 mouse_genomes_project 11 40597665 40598891 + Slu7 protein_coding processed_transcript MGP_AJ_T0017179.1 MGP_AJ_G0015140.1 mouse_genomes_project 11 38844621 39097057 + processed_transcript processed_transcript MGP_AJ_T0017180.1 MGP_AJ_G0015140.1 mouse_genomes_project 11 39019074 39101473 + processed_transcript processed_transcript MGP_AJ_T0017181.1 MGP_AJ_G0015140.1 mouse_genomes_project 11 39091227 39099467 + processed_transcript processed_transcript MGP_AJ_T0017184.1 MGP_AJ_G0015143.1 mouse_genomes_project 11 47883034 47886177 - Gm12198 processed_transcript processed_transcript MGP_AJ_T0012467.1 MGP_AJ_G0010562.1 mouse_genomes_project 11 3145491 3145847 - processed_pseudogene processed_pseudogene MGP_AJ_T0102232.1 MGP_AJ_G0039975.1 mouse_genomes_project 11 55545303 55555822 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0012505.1 MGP_AJ_G0010600.1 mouse_genomes_project 11 16268672 16269696 + processed_pseudogene processed_pseudogene MGP_AJ_T0028714.1 MGP_AJ_G0018186.1 mouse_genomes_project 11 46280269 46300566 + MGP_AJ_P0028714 Ifi47 protein_coding protein_coding MGP_AJ_T0028715.1 MGP_AJ_G0018186.1 mouse_genomes_project 11 46290306 46299028 + Ifi47 protein_coding processed_transcript MGP_AJ_T0028717.1 MGP_AJ_G0018186.1 mouse_genomes_project 11 46290645 46300564 + MGP_AJ_P0028717 Ifi47 protein_coding protein_coding MGP_AJ_T0028429.1 MGP_AJ_G0018103.1 mouse_genomes_project 11 29273239 29278754 + MGP_AJ_P0028429 Mpg protein_coding nonsense_mediated_decay MGP_AJ_T0028430.1 MGP_AJ_G0018103.1 mouse_genomes_project 11 29273245 29279433 + MGP_AJ_P0028430 Mpg protein_coding protein_coding MGP_AJ_T0028431.1 MGP_AJ_G0018103.1 mouse_genomes_project 11 29273264 29275132 + Mpg protein_coding retained_intron MGP_AJ_T0028432.1 MGP_AJ_G0018103.1 mouse_genomes_project 11 29273273 29277979 + MGP_AJ_P0028432 Mpg protein_coding nonsense_mediated_decay MGP_AJ_T0009656.1 MGP_AJ_G0007778.1 mouse_genomes_project 11 18272711 18272799 - Mir1933 miRNA miRNA MGP_AJ_T0027793.1 MGP_AJ_G0017960.1 mouse_genomes_project 11 1652375 1687755 + MGP_AJ_P0027793 Zmat5 protein_coding protein_coding MGP_AJ_T0027794.1 MGP_AJ_G0017960.1 mouse_genomes_project 11 1652405 1687481 + Zmat5 protein_coding processed_transcript MGP_AJ_T0027795.1 MGP_AJ_G0017960.1 mouse_genomes_project 11 1678652 1682608 + Zmat5 protein_coding processed_transcript MGP_AJ_T0028999.1 MGP_AJ_G0018261.1 mouse_genomes_project 11 50832252 50838141 + Gdf9 protein_coding processed_transcript MGP_AJ_T0029000.1 MGP_AJ_G0018261.1 mouse_genomes_project 11 50834071 50835010 + Gdf9 protein_coding processed_transcript MGP_AJ_T0029001.1 MGP_AJ_G0018261.1 mouse_genomes_project 11 50834528 50839143 + MGP_AJ_P0029001 Gdf9 protein_coding protein_coding MGP_AJ_T0009676.1 MGP_AJ_G0007798.1 mouse_genomes_project 11 47339261 47339359 + Mir340 miRNA miRNA MGP_AJ_T0100576.1 MGP_AJ_G0038542.1 mouse_genomes_project 11 19770131 19770233 + Gm23772 snoRNA snoRNA MGP_AJ_T0012457.1 MGP_AJ_G0010552.1 mouse_genomes_project 11 551867 552705 + processed_pseudogene processed_pseudogene MGP_AJ_T0027671.1 MGP_AJ_G0017930.1 mouse_genomes_project 11 330854 367386 - MGP_AJ_P0027671 Rnf185 protein_coding protein_coding MGP_AJ_T0027672.1 MGP_AJ_G0017930.1 mouse_genomes_project 11 330854 367386 - MGP_AJ_P0027672 Rnf185 protein_coding protein_coding MGP_AJ_T0027673.1 MGP_AJ_G0017930.1 mouse_genomes_project 11 332748 367357 - Rnf185 protein_coding processed_transcript MGP_AJ_T0031654.1 MGP_AJ_G0018922.1 mouse_genomes_project 11 92556489 92567835 + MGP_AJ_P0031654 Ankrd40 protein_coding protein_coding MGP_AJ_T0031655.1 MGP_AJ_G0018922.1 mouse_genomes_project 11 92556489 92570172 + MGP_AJ_P0031655 Ankrd40 protein_coding protein_coding MGP_AJ_T0031656.1 MGP_AJ_G0018922.1 mouse_genomes_project 11 92566619 92568474 + Ankrd40 protein_coding retained_intron MGP_AJ_T0027821.1 MGP_AJ_G0017966.1 mouse_genomes_project 11 1943331 2000072 + MGP_AJ_P0027821 Ap1b1 protein_coding protein_coding MGP_AJ_T0027822.1 MGP_AJ_G0017966.1 mouse_genomes_project 11 1943331 2000010 + MGP_AJ_P0027822 Ap1b1 protein_coding protein_coding MGP_AJ_T0027823.1 MGP_AJ_G0017966.1 mouse_genomes_project 11 1943419 1972904 + Ap1b1 protein_coding processed_transcript MGP_AJ_T0027824.1 MGP_AJ_G0017966.1 mouse_genomes_project 11 1943441 1974014 + Ap1b1 protein_coding processed_transcript MGP_AJ_T0027825.1 MGP_AJ_G0017966.1 mouse_genomes_project 11 1965868 1972904 + Ap1b1 protein_coding processed_transcript MGP_AJ_T0027826.1 MGP_AJ_G0017966.1 mouse_genomes_project 11 1965924 2000010 + MGP_AJ_P0027826 Ap1b1 protein_coding protein_coding MGP_AJ_T0027827.1 MGP_AJ_G0017966.1 mouse_genomes_project 11 1988256 1990071 + Ap1b1 protein_coding processed_transcript MGP_AJ_T0027828.1 MGP_AJ_G0017966.1 mouse_genomes_project 11 1994649 1997683 + Ap1b1 protein_coding processed_transcript MGP_AJ_T0027829.1 MGP_AJ_G0017966.1 mouse_genomes_project 11 1996044 1997702 + Ap1b1 protein_coding processed_transcript MGP_AJ_T0012745.1 MGP_AJ_G0010840.1 mouse_genomes_project 11 99823676 99823913 - processed_pseudogene processed_pseudogene MGP_AJ_T0029165.1 MGP_AJ_G0018303.1 mouse_genomes_project 11 53514510 53531307 - MGP_AJ_P0029165 Nmur2 protein_coding protein_coding MGP_AJ_T0003195.1 MGP_AJ_G0002961.1 mouse_genomes_project 11 60338583 60340566 + Lrrc75aos2 antisense antisense MGP_AJ_T0003196.1 MGP_AJ_G0002961.1 mouse_genomes_project 11 60338584 60339841 + Lrrc75aos2 antisense antisense MGP_AJ_T0032244.1 MGP_AJ_G0019101.1 mouse_genomes_project 11 98398683 98399444 - MGP_AJ_P0032244 Krtap17-1 protein_coding protein_coding MGP_AJ_T0012552.1 MGP_AJ_G0010647.1 mouse_genomes_project 11 27562074 27564433 - processed_pseudogene processed_pseudogene MGP_AJ_T0003344.1 MGP_AJ_G0003080.1 mouse_genomes_project 11 115309445 115317517 + Gm11739 antisense antisense MGP_AJ_T0027875.1 MGP_AJ_G0017974.1 mouse_genomes_project 11 2489639 2494876 + MGP_AJ_P0027875 Xbp1 protein_coding protein_coding MGP_AJ_T0027876.1 MGP_AJ_G0017974.1 mouse_genomes_project 11 2489985 2493010 + Xbp1 protein_coding retained_intron MGP_AJ_T0027877.1 MGP_AJ_G0017974.1 mouse_genomes_project 11 2490643 2493927 + MGP_AJ_P0027877 Xbp1 protein_coding protein_coding MGP_AJ_T0027878.1 MGP_AJ_G0017974.1 mouse_genomes_project 11 2490903 2494089 + MGP_AJ_P0027878 Xbp1 protein_coding protein_coding MGP_AJ_T0009655.1 MGP_AJ_G0007777.1 mouse_genomes_project 11 13540452 13540553 - Gm24714 miRNA miRNA MGP_AJ_T0032173.1 MGP_AJ_G0019049.1 mouse_genomes_project 11 97405170 97418632 + MGP_AJ_P0032173 Igfbp4 protein_coding protein_coding MGP_AJ_T0032174.1 MGP_AJ_G0019049.1 mouse_genomes_project 11 97405686 97415968 + MGP_AJ_P0032174 Igfbp4 protein_coding protein_coding MGP_AJ_T0032175.1 MGP_AJ_G0019049.1 mouse_genomes_project 11 97406112 97412627 + Igfbp4 protein_coding processed_transcript MGP_AJ_T0032176.1 MGP_AJ_G0019049.1 mouse_genomes_project 11 97407852 97416187 + Igfbp4 protein_coding processed_transcript MGP_AJ_T0032177.1 MGP_AJ_G0019049.1 mouse_genomes_project 11 97409021 97416082 + Igfbp4 protein_coding processed_transcript MGP_AJ_T0032178.1 MGP_AJ_G0019049.1 mouse_genomes_project 11 97411564 97416079 + MGP_AJ_P0032178 Igfbp4 protein_coding protein_coding MGP_AJ_T0033601.1 MGP_AJ_G0019392.1 mouse_genomes_project 11 115130203 115149063 - Exoc7 protein_coding processed_transcript MGP_AJ_T0033602.1 MGP_AJ_G0019392.1 mouse_genomes_project 11 115130203 115149063 - MGP_AJ_P0033602 Exoc7 protein_coding protein_coding MGP_AJ_T0033603.1 MGP_AJ_G0019392.1 mouse_genomes_project 11 115130203 115149063 - MGP_AJ_P0033603 Exoc7 protein_coding protein_coding MGP_AJ_T0033604.1 MGP_AJ_G0019392.1 mouse_genomes_project 11 115130203 115149063 - MGP_AJ_P0033604 Exoc7 protein_coding protein_coding MGP_AJ_T0033605.1 MGP_AJ_G0019392.1 mouse_genomes_project 11 115131265 115132671 - Exoc7 protein_coding processed_transcript MGP_AJ_T0033606.1 MGP_AJ_G0019392.1 mouse_genomes_project 11 115131311 115133661 - Exoc7 protein_coding processed_transcript MGP_AJ_T0033607.1 MGP_AJ_G0019392.1 mouse_genomes_project 11 115134762 115139993 - Exoc7 protein_coding processed_transcript MGP_AJ_T0033608.1 MGP_AJ_G0019392.1 mouse_genomes_project 11 115137906 115148981 - MGP_AJ_P0033608 Exoc7 protein_coding protein_coding MGP_AJ_T0033609.1 MGP_AJ_G0019392.1 mouse_genomes_project 11 115146941 115149056 - MGP_AJ_P0033609 Exoc7 protein_coding protein_coding MGP_AJ_T0033610.1 MGP_AJ_G0019392.1 mouse_genomes_project 11 115147360 115149562 - MGP_AJ_P0033610 Exoc7 protein_coding protein_coding MGP_AJ_T0032191.1 MGP_AJ_G0019053.1 mouse_genomes_project 11 97597489 97608784 - MGP_AJ_P0032191 Krt222 protein_coding protein_coding MGP_AJ_T0032192.1 MGP_AJ_G0019053.1 mouse_genomes_project 11 97598618 97608802 - MGP_AJ_P0032192 Krt222 protein_coding protein_coding MGP_AJ_T0032193.1 MGP_AJ_G0019053.1 mouse_genomes_project 11 97599671 97603606 - Krt222 protein_coding processed_transcript MGP_AJ_T0006209.1 MGP_AJ_G0005184.1 mouse_genomes_project 11 28831857 28865988 - D630024D03Rik lincRNA lincRNA MGP_AJ_T0006210.1 MGP_AJ_G0005184.1 mouse_genomes_project 11 28842422 28866039 - D630024D03Rik lincRNA lincRNA MGP_AJ_T0006211.1 MGP_AJ_G0005184.1 mouse_genomes_project 11 28859626 28865988 - D630024D03Rik lincRNA lincRNA MGP_AJ_T0030377.1 MGP_AJ_G0018593.1 mouse_genomes_project 11 69010020 69063787 - MGP_AJ_P0030377 Nlrp1b protein_coding protein_coding MGP_AJ_T0012757.1 MGP_AJ_G0010852.1 mouse_genomes_project 11 103503673 103504262 + processed_pseudogene processed_pseudogene MGP_AJ_T0029572.1 MGP_AJ_G0018420.1 mouse_genomes_project 11 59990614 60005329 - MGP_AJ_P0029572 Zswim7 protein_coding protein_coding MGP_AJ_T0100635.1 MGP_AJ_G0038601.1 mouse_genomes_project 11 115529502 115529577 + Snord1b snoRNA snoRNA MGP_AJ_T0006223.1 MGP_AJ_G0005196.1 mouse_genomes_project 11 37645502 37646462 - 3110004A20Rik lincRNA lincRNA MGP_AJ_T0031830.1 MGP_AJ_G0018969.1 mouse_genomes_project 11 94555886 94561500 + MGP_AJ_P0031830 Hoxb9 protein_coding protein_coding MGP_AJ_T0031831.1 MGP_AJ_G0018969.1 mouse_genomes_project 11 94555952 94561500 + MGP_AJ_P0031831 Hoxb9 protein_coding protein_coding MGP_AJ_T0030024.1 MGP_AJ_G0018525.1 mouse_genomes_project 11 67637252 67639152 - MGP_AJ_P0030024 4933402P03Rik protein_coding protein_coding MGP_AJ_T0017210.1 MGP_AJ_G0015157.1 mouse_genomes_project 11 70160669 70162827 + 1700051A21Rik processed_transcript processed_transcript MGP_AJ_T0017211.1 MGP_AJ_G0015157.1 mouse_genomes_project 11 70161092 70162809 + 1700051A21Rik processed_transcript processed_transcript MGP_AJ_T0033962.1 MGP_AJ_G0019461.1 mouse_genomes_project 11 119137959 119201588 + MGP_AJ_P0033962 Bahcc1 protein_coding protein_coding MGP_AJ_T0033963.1 MGP_AJ_G0019461.1 mouse_genomes_project 11 119137959 119201574 + MGP_AJ_P0033963 Bahcc1 protein_coding protein_coding MGP_AJ_T0033964.1 MGP_AJ_G0019461.1 mouse_genomes_project 11 119141457 119142297 + Bahcc1 protein_coding processed_transcript MGP_AJ_T0033965.1 MGP_AJ_G0019461.1 mouse_genomes_project 11 119141711 119201574 + MGP_AJ_P0033965 Bahcc1 protein_coding protein_coding MGP_AJ_T0033966.1 MGP_AJ_G0019461.1 mouse_genomes_project 11 119199084 119201459 + Bahcc1 protein_coding processed_transcript MGP_AJ_T0030026.1 MGP_AJ_G0018527.1 mouse_genomes_project 11 67643740 67658386 - MGP_AJ_P0030026 Nlgn2 protein_coding protein_coding MGP_AJ_T0030027.1 MGP_AJ_G0018527.1 mouse_genomes_project 11 67643740 67655451 - MGP_AJ_P0030027 Nlgn2 protein_coding protein_coding MGP_AJ_T0030028.1 MGP_AJ_G0018527.1 mouse_genomes_project 11 67648356 67654861 - MGP_AJ_P0030028 Nlgn2 protein_coding protein_coding MGP_AJ_T0030029.1 MGP_AJ_G0018527.1 mouse_genomes_project 11 67648661 67649177 - Nlgn2 protein_coding retained_intron MGP_AJ_T0098907.1 MGP_AJ_G0036888.1 mouse_genomes_project 11 117757768 117758732 - Gm11749 sense_intronic sense_intronic MGP_AJ_T0003160.1 MGP_AJ_G0002931.1 mouse_genomes_project 11 49655143 49665266 + A630014C17Rik antisense antisense MGP_AJ_T0032528.1 MGP_AJ_G0019175.1 mouse_genomes_project 11 100036751 100044080 + MGP_AJ_P0032528 Nbr1 protein_coding protein_coding MGP_AJ_T0032529.1 MGP_AJ_G0019175.1 mouse_genomes_project 11 100037372 100066921 + MGP_AJ_P0032529 Nbr1 protein_coding protein_coding MGP_AJ_T0032530.1 MGP_AJ_G0019175.1 mouse_genomes_project 11 100037375 100066922 + MGP_AJ_P0032530 Nbr1 protein_coding protein_coding MGP_AJ_T0032531.1 MGP_AJ_G0019175.1 mouse_genomes_project 11 100037375 100066922 + MGP_AJ_P0032531 Nbr1 protein_coding nonsense_mediated_decay MGP_AJ_T0032532.1 MGP_AJ_G0019175.1 mouse_genomes_project 11 100037384 100053517 + Nbr1 protein_coding processed_transcript MGP_AJ_T0032533.1 MGP_AJ_G0019175.1 mouse_genomes_project 11 100037399 100066921 + MGP_AJ_P0032533 Nbr1 protein_coding protein_coding MGP_AJ_T0032534.1 MGP_AJ_G0019175.1 mouse_genomes_project 11 100037418 100044079 + MGP_AJ_P0032534 Nbr1 protein_coding protein_coding MGP_AJ_T0032535.1 MGP_AJ_G0019175.1 mouse_genomes_project 11 100040395 100044096 + MGP_AJ_P0032535 Nbr1 protein_coding nonsense_mediated_decay MGP_AJ_T0032536.1 MGP_AJ_G0019175.1 mouse_genomes_project 11 100040701 100065983 + MGP_AJ_P0032536 Nbr1 protein_coding protein_coding MGP_AJ_T0032537.1 MGP_AJ_G0019175.1 mouse_genomes_project 11 100044052 100044115 + Nbr1 protein_coding misc_RNA MGP_AJ_T0032538.1 MGP_AJ_G0019175.1 mouse_genomes_project 11 100046318 100050552 + Nbr1 protein_coding retained_intron MGP_AJ_T0032539.1 MGP_AJ_G0019175.1 mouse_genomes_project 11 100050803 100053423 + Nbr1 protein_coding retained_intron MGP_AJ_T0032540.1 MGP_AJ_G0019175.1 mouse_genomes_project 11 100053270 100054380 + Nbr1 protein_coding retained_intron MGP_AJ_T0032541.1 MGP_AJ_G0019175.1 mouse_genomes_project 11 100053663 100054389 + Nbr1 protein_coding processed_transcript MGP_AJ_T0032542.1 MGP_AJ_G0019175.1 mouse_genomes_project 11 100057203 100060193 + Nbr1 protein_coding retained_intron MGP_AJ_T0032543.1 MGP_AJ_G0019175.1 mouse_genomes_project 11 100060083 100061608 + Nbr1 protein_coding retained_intron MGP_AJ_T0032544.1 MGP_AJ_G0019175.1 mouse_genomes_project 11 100062800 100065759 + Nbr1 protein_coding retained_intron MGP_AJ_T0030683.1 MGP_AJ_G0018685.1 mouse_genomes_project 11 73548656 73566942 + MGP_AJ_P0030683 Inpp5k protein_coding protein_coding MGP_AJ_T0030684.1 MGP_AJ_G0018685.1 mouse_genomes_project 11 73548697 73566934 + Inpp5k protein_coding retained_intron MGP_AJ_T0030685.1 MGP_AJ_G0018685.1 mouse_genomes_project 11 73548705 73552939 + Inpp5k protein_coding retained_intron MGP_AJ_T0030686.1 MGP_AJ_G0018685.1 mouse_genomes_project 11 73548723 73566936 + MGP_AJ_P0030686 Inpp5k protein_coding nonsense_mediated_decay MGP_AJ_T0030687.1 MGP_AJ_G0018685.1 mouse_genomes_project 11 73556583 73565346 + Inpp5k protein_coding retained_intron MGP_AJ_T0030688.1 MGP_AJ_G0018685.1 mouse_genomes_project 11 73564855 73565801 + Inpp5k protein_coding processed_transcript MGP_AJ_T0030689.1 MGP_AJ_G0018685.1 mouse_genomes_project 11 73564915 73565934 + MGP_AJ_P0030689 Inpp5k protein_coding protein_coding MGP_AJ_T0009695.1 MGP_AJ_G0007817.1 mouse_genomes_project 11 65995128 65995248 + Mir6406 miRNA miRNA MGP_AJ_T0009664.1 MGP_AJ_G0007786.1 mouse_genomes_project 11 25775239 25775311 + Mir216a miRNA miRNA MGP_AJ_T0003229.1 MGP_AJ_G0002988.1 mouse_genomes_project 11 75985674 75988328 - Dhrs13os antisense antisense MGP_AJ_T0029255.1 MGP_AJ_G0018346.1 mouse_genomes_project 11 56312127 56312980 + MGP_AJ_P0029255 protein_coding protein_coding MGP_AJ_T0100603.1 MGP_AJ_G0038569.1 mouse_genomes_project 11 67485669 67485813 - Gm22988 snoRNA snoRNA MGP_AJ_T0003167.1 MGP_AJ_G0002937.1 mouse_genomes_project 11 52189657 52195923 + Gm12227 antisense antisense MGP_AJ_T0030426.1 MGP_AJ_G0018608.1 mouse_genomes_project 11 70333323 70343730 + Mybbp1a protein_coding retained_intron MGP_AJ_T0030427.1 MGP_AJ_G0018608.1 mouse_genomes_project 11 70333323 70343730 + MGP_AJ_P0030427 Mybbp1a protein_coding protein_coding MGP_AJ_T0030428.1 MGP_AJ_G0018608.1 mouse_genomes_project 11 70333325 70343191 + Mybbp1a protein_coding retained_intron MGP_AJ_T0030429.1 MGP_AJ_G0018608.1 mouse_genomes_project 11 70333345 70335542 + Mybbp1a protein_coding retained_intron MGP_AJ_T0030430.1 MGP_AJ_G0018608.1 mouse_genomes_project 11 70335740 70336525 + Mybbp1a protein_coding retained_intron MGP_AJ_T0030431.1 MGP_AJ_G0018608.1 mouse_genomes_project 11 70340178 70342967 + Mybbp1a protein_coding retained_intron MGP_AJ_T0030432.1 MGP_AJ_G0018608.1 mouse_genomes_project 11 70341599 70342668 + Mybbp1a protein_coding retained_intron MGP_AJ_T0030433.1 MGP_AJ_G0018608.1 mouse_genomes_project 11 70342535 70343064 + Mybbp1a protein_coding retained_intron MGP_AJ_T0033627.1 MGP_AJ_G0019397.1 mouse_genomes_project 11 115314087 115335425 - Prpsap1 protein_coding processed_transcript MGP_AJ_T0033628.1 MGP_AJ_G0019397.1 mouse_genomes_project 11 115314087 115335459 - MGP_AJ_P0033628 Prpsap1 protein_coding protein_coding MGP_AJ_T0033629.1 MGP_AJ_G0019397.1 mouse_genomes_project 11 115314541 115322356 - Prpsap1 protein_coding processed_transcript MGP_AJ_T0033630.1 MGP_AJ_G0019397.1 mouse_genomes_project 11 115314618 115316486 - Prpsap1 protein_coding processed_transcript MGP_AJ_T0033631.1 MGP_AJ_G0019397.1 mouse_genomes_project 11 115314642 115321775 - Prpsap1 protein_coding processed_transcript MGP_AJ_T0033632.1 MGP_AJ_G0019397.1 mouse_genomes_project 11 115322095 115341048 - MGP_AJ_P0033632 Prpsap1 protein_coding protein_coding MGP_AJ_T0033633.1 MGP_AJ_G0019397.1 mouse_genomes_project 11 115322327 115335400 - Prpsap1 protein_coding processed_transcript MGP_AJ_T0033634.1 MGP_AJ_G0019397.1 mouse_genomes_project 11 115322569 115335446 - MGP_AJ_P0033634 Prpsap1 protein_coding protein_coding MGP_AJ_T0033635.1 MGP_AJ_G0019397.1 mouse_genomes_project 11 115330595 115335438 - Prpsap1 protein_coding processed_transcript MGP_AJ_T0006375.1 MGP_AJ_G0005311.1 mouse_genomes_project 11 118002966 118007881 - Gm11754 lincRNA lincRNA MGP_AJ_T0006174.1 MGP_AJ_G0005154.1 mouse_genomes_project 11 10997489 11106335 - lincRNA lincRNA MGP_AJ_T0033670.1 MGP_AJ_G0019404.1 mouse_genomes_project 11 115527022 115531503 + MGP_AJ_P0033670 1810032O08Rik protein_coding nonsense_mediated_decay MGP_AJ_T0033671.1 MGP_AJ_G0019404.1 mouse_genomes_project 11 115527042 115531392 + MGP_AJ_P0033671 1810032O08Rik protein_coding unknown_likely_coding MGP_AJ_T0033672.1 MGP_AJ_G0019404.1 mouse_genomes_project 11 115527049 115527976 + 1810032O08Rik protein_coding retained_intron MGP_AJ_T0033673.1 MGP_AJ_G0019404.1 mouse_genomes_project 11 115527061 115529942 + MGP_AJ_P0033673 1810032O08Rik protein_coding protein_coding MGP_AJ_T0033674.1 MGP_AJ_G0019404.1 mouse_genomes_project 11 115527234 115529328 + MGP_AJ_P0033674 1810032O08Rik protein_coding protein_coding MGP_AJ_T0033675.1 MGP_AJ_G0019404.1 mouse_genomes_project 11 115528045 115531507 + MGP_AJ_P0033675 1810032O08Rik protein_coding nonsense_mediated_decay MGP_AJ_T0031165.1 MGP_AJ_G0018798.1 mouse_genomes_project 11 80848846 80919923 - MGP_AJ_P0031165 Rffl protein_coding protein_coding MGP_AJ_T0031166.1 MGP_AJ_G0018798.1 mouse_genomes_project 11 80851032 80894943 - MGP_AJ_P0031166 Rffl protein_coding protein_coding MGP_AJ_T0031167.1 MGP_AJ_G0018798.1 mouse_genomes_project 11 80852446 80873898 - MGP_AJ_P0031167 Rffl protein_coding protein_coding MGP_AJ_T0031168.1 MGP_AJ_G0018798.1 mouse_genomes_project 11 80857693 80895187 - MGP_AJ_P0031168 Rffl protein_coding protein_coding MGP_AJ_T0028865.1 MGP_AJ_G0018224.1 mouse_genomes_project 11 48182807 48194906 - MGP_AJ_P0028865 Zfp2 protein_coding protein_coding MGP_AJ_T0028866.1 MGP_AJ_G0018224.1 mouse_genomes_project 11 48182807 48200236 - MGP_AJ_P0028866 Zfp2 protein_coding protein_coding MGP_AJ_T0028867.1 MGP_AJ_G0018224.1 mouse_genomes_project 11 48183154 48200259 - MGP_AJ_P0028867 Zfp2 protein_coding protein_coding MGP_AJ_T0028868.1 MGP_AJ_G0018224.1 mouse_genomes_project 11 48185342 48200225 - Zfp2 protein_coding processed_transcript MGP_AJ_T0028869.1 MGP_AJ_G0018224.1 mouse_genomes_project 11 48189279 48200246 - Zfp2 protein_coding processed_transcript MGP_AJ_T0028870.1 MGP_AJ_G0018224.1 mouse_genomes_project 11 48190085 48200228 - Zfp2 protein_coding processed_transcript MGP_AJ_T0006225.1 MGP_AJ_G0005198.1 mouse_genomes_project 11 40536697 40538411 + Gm12148 lincRNA lincRNA MGP_AJ_T0031411.1 MGP_AJ_G0018861.1 mouse_genomes_project 11 84874118 84938601 - MGP_AJ_P0031411 Cltc protein_coding protein_coding MGP_AJ_T0031412.1 MGP_AJ_G0018861.1 mouse_genomes_project 11 84874422 84938537 - MGP_AJ_P0031412 Cltc protein_coding protein_coding MGP_AJ_T0031413.1 MGP_AJ_G0018861.1 mouse_genomes_project 11 84875086 84883480 - MGP_AJ_P0031413 Cltc protein_coding protein_coding MGP_AJ_T0031414.1 MGP_AJ_G0018861.1 mouse_genomes_project 11 84880721 84882214 - Cltc protein_coding processed_transcript MGP_AJ_T0031415.1 MGP_AJ_G0018861.1 mouse_genomes_project 11 84903403 84906637 - Cltc protein_coding retained_intron MGP_AJ_T0031416.1 MGP_AJ_G0018861.1 mouse_genomes_project 11 84904352 84906606 - Cltc protein_coding processed_transcript MGP_AJ_T0003181.1 MGP_AJ_G0002949.1 mouse_genomes_project 11 56938944 56943345 + Gm15755 antisense antisense MGP_AJ_T0009684.1 MGP_AJ_G0007806.1 mouse_genomes_project 11 52990172 52990228 + Mir7652 miRNA miRNA MGP_AJ_T0028681.1 MGP_AJ_G0018173.1 mouse_genomes_project 11 43973719 44008177 + MGP_AJ_P0028681 Timd4 protein_coding protein_coding MGP_AJ_T0033533.1 MGP_AJ_G0019378.1 mouse_genomes_project 11 114837585 114842019 - MGP_AJ_P0033533 Galk1 protein_coding protein_coding MGP_AJ_T0028492.1 MGP_AJ_G0018122.1 mouse_genomes_project 11 31145549 31190874 + MGP_AJ_P0028492 Lcp2 protein_coding protein_coding MGP_AJ_T0028493.1 MGP_AJ_G0018122.1 mouse_genomes_project 11 31145789 31188801 + MGP_AJ_P0028493 Lcp2 protein_coding protein_coding MGP_AJ_T0028494.1 MGP_AJ_G0018122.1 mouse_genomes_project 11 31145822 31190859 + MGP_AJ_P0028494 Lcp2 protein_coding protein_coding MGP_AJ_T0028495.1 MGP_AJ_G0018122.1 mouse_genomes_project 11 31176846 31177262 + Lcp2 protein_coding processed_transcript MGP_AJ_T0028496.1 MGP_AJ_G0018122.1 mouse_genomes_project 11 31185673 31189330 + Lcp2 protein_coding processed_transcript MGP_AJ_T0031734.1 MGP_AJ_G0018940.1 mouse_genomes_project 11 93226659 93227514 + MGP_AJ_P0031734 Hils1 protein_coding protein_coding MGP_AJ_T0099313.1 MGP_AJ_G0037279.1 mouse_genomes_project 11 15627205 15627307 + Gm23093 snRNA snRNA MGP_AJ_T0006362.1 MGP_AJ_G0005301.1 mouse_genomes_project 11 114432475 114443837 + Gm26613 lincRNA lincRNA MGP_AJ_T0029491.1 MGP_AJ_G0018407.1 mouse_genomes_project 11 59141461 59147126 - MGP_AJ_P0029491 Rnf112 protein_coding protein_coding MGP_AJ_T0029492.1 MGP_AJ_G0018407.1 mouse_genomes_project 11 59141461 59147025 - MGP_AJ_P0029492 Rnf112 protein_coding protein_coding MGP_AJ_T0029493.1 MGP_AJ_G0018407.1 mouse_genomes_project 11 59141461 59147025 - MGP_AJ_P0029493 Rnf112 protein_coding protein_coding MGP_AJ_T0029494.1 MGP_AJ_G0018407.1 mouse_genomes_project 11 59145064 59147151 - Rnf112 protein_coding processed_transcript MGP_AJ_T0029495.1 MGP_AJ_G0018407.1 mouse_genomes_project 11 59145282 59146939 - Rnf112 protein_coding processed_transcript MGP_AJ_T0029496.1 MGP_AJ_G0018407.1 mouse_genomes_project 11 59145754 59146962 - Rnf112 protein_coding processed_transcript MGP_AJ_T0029497.1 MGP_AJ_G0018407.1 mouse_genomes_project 11 59145935 59146953 - Rnf112 protein_coding processed_transcript MGP_AJ_T0029260.1 MGP_AJ_G0018349.1 mouse_genomes_project 11 56413512 56438974 - MGP_AJ_P0029260 Zfp39 protein_coding protein_coding MGP_AJ_T0031322.1 MGP_AJ_G0018843.1 mouse_genomes_project 11 83071838 83078868 - MGP_AJ_P0031322 Znhit3 protein_coding protein_coding MGP_AJ_T0031323.1 MGP_AJ_G0018843.1 mouse_genomes_project 11 83072179 83078851 - Znhit3 protein_coding processed_transcript MGP_AJ_T0031324.1 MGP_AJ_G0018843.1 mouse_genomes_project 11 83072357 83078868 - Znhit3 protein_coding processed_transcript MGP_AJ_T0031325.1 MGP_AJ_G0018843.1 mouse_genomes_project 11 83072393 83078807 - Znhit3 protein_coding processed_transcript MGP_AJ_T0031326.1 MGP_AJ_G0018843.1 mouse_genomes_project 11 83077121 83078826 - Znhit3 protein_coding retained_intron MGP_AJ_T0009774.1 MGP_AJ_G0007896.1 mouse_genomes_project 11 118970285 118970397 - Gm25948 miRNA miRNA MGP_AJ_T0029965.1 MGP_AJ_G0018511.1 mouse_genomes_project 11 67471315 67472729 + MGP_AJ_P0029965 Sox15 protein_coding protein_coding MGP_AJ_T0032375.1 MGP_AJ_G0019141.1 mouse_genomes_project 11 99341334 99366194 - MGP_AJ_P0032375 Stat3 protein_coding protein_coding MGP_AJ_T0032376.1 MGP_AJ_G0019141.1 mouse_genomes_project 11 99342750 99344840 - Stat3 protein_coding retained_intron MGP_AJ_T0032377.1 MGP_AJ_G0019141.1 mouse_genomes_project 11 99342763 99394113 - MGP_AJ_P0032377 Stat3 protein_coding protein_coding MGP_AJ_T0032378.1 MGP_AJ_G0019141.1 mouse_genomes_project 11 99343208 99394212 - MGP_AJ_P0032378 Stat3 protein_coding protein_coding MGP_AJ_T0032379.1 MGP_AJ_G0019141.1 mouse_genomes_project 11 99344005 99348271 - Stat3 protein_coding retained_intron MGP_AJ_T0032380.1 MGP_AJ_G0019141.1 mouse_genomes_project 11 99347556 99348330 - Stat3 protein_coding retained_intron MGP_AJ_T0032381.1 MGP_AJ_G0019141.1 mouse_genomes_project 11 99348051 99348961 - Stat3 protein_coding retained_intron MGP_AJ_T0032382.1 MGP_AJ_G0019141.1 mouse_genomes_project 11 99348498 99354230 - Stat3 protein_coding processed_transcript MGP_AJ_T0032383.1 MGP_AJ_G0019141.1 mouse_genomes_project 11 99349012 99349647 - Stat3 protein_coding retained_intron MGP_AJ_T0032384.1 MGP_AJ_G0019141.1 mouse_genomes_project 11 99349014 99353451 - Stat3 protein_coding retained_intron MGP_AJ_T0032385.1 MGP_AJ_G0019141.1 mouse_genomes_project 11 99357679 99360457 - Stat3 protein_coding retained_intron MGP_AJ_T0032386.1 MGP_AJ_G0019141.1 mouse_genomes_project 11 99360125 99360892 - Stat3 protein_coding retained_intron MGP_AJ_T0032387.1 MGP_AJ_G0019141.1 mouse_genomes_project 11 99360701 99363272 - Stat3 protein_coding retained_intron MGP_AJ_T0032750.1 MGP_AJ_G0019211.1 mouse_genomes_project 11 101303599 101322397 + MGP_AJ_P0032750 Adam11 protein_coding protein_coding MGP_AJ_T0032751.1 MGP_AJ_G0019211.1 mouse_genomes_project 11 101303599 101322397 + MGP_AJ_P0032751 Adam11 protein_coding protein_coding MGP_AJ_T0032752.1 MGP_AJ_G0019211.1 mouse_genomes_project 11 101304246 101313586 + Adam11 protein_coding processed_transcript MGP_AJ_T0032753.1 MGP_AJ_G0019211.1 mouse_genomes_project 11 101304343 101313946 + Adam11 protein_coding processed_transcript MGP_AJ_T0032754.1 MGP_AJ_G0019211.1 mouse_genomes_project 11 101311913 101313879 + Adam11 protein_coding processed_transcript MGP_AJ_T0032755.1 MGP_AJ_G0019211.1 mouse_genomes_project 11 101313593 101315773 + Adam11 protein_coding processed_transcript MGP_AJ_T0032756.1 MGP_AJ_G0019211.1 mouse_genomes_project 11 101316192 101318241 + Adam11 protein_coding processed_transcript MGP_AJ_T0032757.1 MGP_AJ_G0019211.1 mouse_genomes_project 11 101316228 101318518 + Adam11 protein_coding processed_transcript MGP_AJ_T0032758.1 MGP_AJ_G0019211.1 mouse_genomes_project 11 101318670 101320584 + Adam11 protein_coding processed_transcript MGP_AJ_T0032767.1 MGP_AJ_G0019214.1 mouse_genomes_project 11 101383465 101425081 - MGP_AJ_P0032767 Eftud2 protein_coding protein_coding MGP_AJ_T0032768.1 MGP_AJ_G0019214.1 mouse_genomes_project 11 101383465 101425099 - MGP_AJ_P0032768 Eftud2 protein_coding protein_coding MGP_AJ_T0032769.1 MGP_AJ_G0019214.1 mouse_genomes_project 11 101383469 101389244 - MGP_AJ_P0032769 Eftud2 protein_coding protein_coding MGP_AJ_T0032770.1 MGP_AJ_G0019214.1 mouse_genomes_project 11 101383793 101421834 - MGP_AJ_P0032770 Eftud2 protein_coding protein_coding MGP_AJ_T0032771.1 MGP_AJ_G0019214.1 mouse_genomes_project 11 101383830 101386244 - MGP_AJ_P0032771 Eftud2 protein_coding nonsense_mediated_decay MGP_AJ_T0032772.1 MGP_AJ_G0019214.1 mouse_genomes_project 11 101384442 101385669 - Eftud2 protein_coding retained_intron MGP_AJ_T0032773.1 MGP_AJ_G0019214.1 mouse_genomes_project 11 101385204 101393003 - Eftud2 protein_coding retained_intron MGP_AJ_T0032774.1 MGP_AJ_G0019214.1 mouse_genomes_project 11 101394212 101405252 - Eftud2 protein_coding retained_intron MGP_AJ_T0032775.1 MGP_AJ_G0019214.1 mouse_genomes_project 11 101407642 101421810 - MGP_AJ_P0032775 Eftud2 protein_coding nonsense_mediated_decay MGP_AJ_T0032776.1 MGP_AJ_G0019214.1 mouse_genomes_project 11 101408893 101410992 - Eftud2 protein_coding retained_intron MGP_AJ_T0032777.1 MGP_AJ_G0019214.1 mouse_genomes_project 11 101410884 101425078 - Eftud2 protein_coding retained_intron MGP_AJ_T0032778.1 MGP_AJ_G0019214.1 mouse_genomes_project 11 101414897 101421835 - Eftud2 protein_coding retained_intron MGP_AJ_T0032779.1 MGP_AJ_G0019214.1 mouse_genomes_project 11 101421083 101425049 - Eftud2 protein_coding retained_intron MGP_AJ_T0032262.1 MGP_AJ_G0019112.1 mouse_genomes_project 11 98594608 98600792 - MGP_AJ_P0032262 Krt9 protein_coding protein_coding MGP_AJ_T0017174.1 MGP_AJ_G0015135.1 mouse_genomes_project 11 20484313 20485103 - Gm12060 processed_transcript processed_transcript MGP_AJ_T0028051.1 MGP_AJ_G0018019.1 mouse_genomes_project 11 8762654 8784759 - Fignl1 protein_coding processed_transcript MGP_AJ_T0028052.1 MGP_AJ_G0018019.1 mouse_genomes_project 11 8762666 8777259 - Fignl1 protein_coding processed_transcript MGP_AJ_T0028053.1 MGP_AJ_G0018019.1 mouse_genomes_project 11 8776085 8784796 - MGP_AJ_P0028053 Fignl1 protein_coding protein_coding MGP_AJ_T0028054.1 MGP_AJ_G0018019.1 mouse_genomes_project 11 8776085 8784796 - MGP_AJ_P0028054 Fignl1 protein_coding protein_coding MGP_AJ_T0028055.1 MGP_AJ_G0018019.1 mouse_genomes_project 11 8776085 8784793 - MGP_AJ_P0028055 Fignl1 protein_coding protein_coding MGP_AJ_T0028056.1 MGP_AJ_G0018019.1 mouse_genomes_project 11 8776349 8784766 - MGP_AJ_P0028056 Fignl1 protein_coding protein_coding MGP_AJ_T0028057.1 MGP_AJ_G0018019.1 mouse_genomes_project 11 8778494 8784782 - MGP_AJ_P0028057 Fignl1 protein_coding protein_coding MGP_AJ_T0033550.1 MGP_AJ_G0019382.1 mouse_genomes_project 11 114913751 114923120 - MGP_AJ_P0033550 Wbp2 protein_coding protein_coding MGP_AJ_T0033551.1 MGP_AJ_G0019382.1 mouse_genomes_project 11 114914430 114923120 - MGP_AJ_P0033551 Wbp2 protein_coding protein_coding MGP_AJ_T0033552.1 MGP_AJ_G0019382.1 mouse_genomes_project 11 114914575 114916663 - Wbp2 protein_coding processed_transcript MGP_AJ_T0033553.1 MGP_AJ_G0019382.1 mouse_genomes_project 11 114917006 114923120 - Wbp2 protein_coding processed_transcript MGP_AJ_T0033554.1 MGP_AJ_G0019382.1 mouse_genomes_project 11 114918247 114923097 - Wbp2 protein_coding processed_transcript MGP_AJ_T0028539.1 MGP_AJ_G0018134.1 mouse_genomes_project 11 37873660 37907231 - MGP_AJ_P0028539 Hmmr protein_coding protein_coding MGP_AJ_T0028540.1 MGP_AJ_G0018134.1 mouse_genomes_project 11 37893001 37907225 - Hmmr protein_coding processed_transcript MGP_AJ_T0028541.1 MGP_AJ_G0018134.1 mouse_genomes_project 11 37894964 37907225 - Hmmr protein_coding processed_transcript MGP_AJ_T0028542.1 MGP_AJ_G0018134.1 mouse_genomes_project 11 37896835 37907200 - Hmmr protein_coding processed_transcript MGP_AJ_T0099319.1 MGP_AJ_G0037285.1 mouse_genomes_project 11 23259443 23259604 - Gm22868 snRNA snRNA MGP_AJ_T0031920.1 MGP_AJ_G0018992.1 mouse_genomes_project 11 95408939 95426095 - MGP_AJ_P0031920 Tbx21 protein_coding protein_coding MGP_AJ_T0012785.1 MGP_AJ_G0010880.1 mouse_genomes_project 11 115352141 115352444 + processed_pseudogene processed_pseudogene MGP_AJ_T0031706.1 MGP_AJ_G0018932.1 mouse_genomes_project 11 92873111 92883525 - MGP_AJ_P0031706 Eme1 protein_coding protein_coding MGP_AJ_T0031707.1 MGP_AJ_G0018932.1 mouse_genomes_project 11 92875828 92878638 - Eme1 protein_coding processed_transcript MGP_AJ_T0031708.1 MGP_AJ_G0018932.1 mouse_genomes_project 11 92878001 92878813 - Eme1 protein_coding processed_transcript MGP_AJ_T0031709.1 MGP_AJ_G0018932.1 mouse_genomes_project 11 92878682 92883232 - Eme1 protein_coding processed_transcript MGP_AJ_T0030524.1 MGP_AJ_G0018637.1 mouse_genomes_project 11 71535207 71536146 - MGP_AJ_P0030524 Olfr385 protein_coding protein_coding MGP_AJ_T0009683.1 MGP_AJ_G0007805.1 mouse_genomes_project 11 52116408 52116485 - Gm26116 miRNA miRNA MGP_AJ_T0029786.1 MGP_AJ_G0018471.1 mouse_genomes_project 11 66333569 66335629 + MGP_AJ_P0029786 Mfsd6l protein_coding protein_coding MGP_AJ_T0099377.1 MGP_AJ_G0037343.1 mouse_genomes_project 11 101079745 101079849 - Gm25337 snRNA snRNA MGP_AJ_T0031521.1 MGP_AJ_G0018889.1 mouse_genomes_project 11 86302981 86305030 + Cuedc1 protein_coding processed_transcript MGP_AJ_T0031522.1 MGP_AJ_G0018889.1 mouse_genomes_project 11 86304067 86398977 + MGP_AJ_P0031522 Cuedc1 protein_coding protein_coding MGP_AJ_T0031523.1 MGP_AJ_G0018889.1 mouse_genomes_project 11 86304211 86390636 + Cuedc1 protein_coding retained_intron MGP_AJ_T0031524.1 MGP_AJ_G0018889.1 mouse_genomes_project 11 86367550 86398977 + MGP_AJ_P0031524 Cuedc1 protein_coding nonsense_mediated_decay MGP_AJ_T0031525.1 MGP_AJ_G0018889.1 mouse_genomes_project 11 86387580 86388558 + Cuedc1 protein_coding retained_intron MGP_AJ_T0031526.1 MGP_AJ_G0018889.1 mouse_genomes_project 11 86391066 86393895 + Cuedc1 protein_coding processed_transcript MGP_AJ_T0031527.1 MGP_AJ_G0018889.1 mouse_genomes_project 11 86392901 86397843 + Cuedc1 protein_coding retained_intron MGP_AJ_T0012636.1 MGP_AJ_G0010731.1 mouse_genomes_project 11 58040572 58041333 - processed_pseudogene processed_pseudogene MGP_AJ_T0032195.1 MGP_AJ_G0019055.1 mouse_genomes_project 11 97680375 97687815 - MGP_AJ_P0032195 Krt25 protein_coding protein_coding MGP_AJ_T0033890.1 MGP_AJ_G0019451.1 mouse_genomes_project 11 118394598 118410863 + MGP_AJ_P0033890 Endov protein_coding nonsense_mediated_decay MGP_AJ_T0033891.1 MGP_AJ_G0019451.1 mouse_genomes_project 11 118394599 118412751 + MGP_AJ_P0033891 Endov protein_coding nonsense_mediated_decay MGP_AJ_T0033892.1 MGP_AJ_G0019451.1 mouse_genomes_project 11 118394628 118410599 + MGP_AJ_P0033892 Endov protein_coding protein_coding MGP_AJ_T0033893.1 MGP_AJ_G0019451.1 mouse_genomes_project 11 118394650 118410551 + MGP_AJ_P0033893 Endov protein_coding protein_coding MGP_AJ_T0033894.1 MGP_AJ_G0019451.1 mouse_genomes_project 11 118394775 118408331 + MGP_AJ_P0033894 Endov protein_coding nonsense_mediated_decay MGP_AJ_T0033895.1 MGP_AJ_G0019451.1 mouse_genomes_project 11 118394900 118404027 + Endov protein_coding retained_intron MGP_AJ_T0033896.1 MGP_AJ_G0019451.1 mouse_genomes_project 11 118395009 118406037 + Endov protein_coding processed_transcript MGP_AJ_T0033897.1 MGP_AJ_G0019451.1 mouse_genomes_project 11 118402720 118409000 + MGP_AJ_P0033897 Endov protein_coding protein_coding MGP_AJ_T0033898.1 MGP_AJ_G0019451.1 mouse_genomes_project 11 118405187 118410561 + Endov protein_coding retained_intron MGP_AJ_T0028132.1 MGP_AJ_G0018037.1 mouse_genomes_project 11 17122900 17141460 + Rab1a protein_coding processed_transcript MGP_AJ_T0028133.1 MGP_AJ_G0018037.1 mouse_genomes_project 11 17123070 17145338 + Rab1a protein_coding processed_transcript MGP_AJ_T0028134.1 MGP_AJ_G0018037.1 mouse_genomes_project 11 17123091 17148566 + MGP_AJ_P0028134 Rab1a protein_coding protein_coding MGP_AJ_T0011305.1 MGP_AJ_G0009427.1 mouse_genomes_project 11 70701141 70701333 - Gm22075 misc_RNA misc_RNA MGP_AJ_T0102240.1 MGP_AJ_G0039983.1 mouse_genomes_project 11 71655830 71656389 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0003209.1 MGP_AJ_G0002972.1 mouse_genomes_project 11 64954398 64957937 - 9430073C21Rik antisense antisense MGP_AJ_T0029081.1 MGP_AJ_G0018282.1 mouse_genomes_project 11 51727317 51729293 - MGP_AJ_P0029081 Il3 protein_coding protein_coding MGP_AJ_T0012697.1 MGP_AJ_G0010792.1 mouse_genomes_project 11 78861051 78861465 - processed_pseudogene processed_pseudogene MGP_AJ_T0029956.1 MGP_AJ_G0018509.1 mouse_genomes_project 11 67436284 67438131 + MGP_AJ_P0029956 Sat2 protein_coding protein_coding MGP_AJ_T0029957.1 MGP_AJ_G0018509.1 mouse_genomes_project 11 67436312 67437719 + Sat2 protein_coding retained_intron MGP_AJ_T0029958.1 MGP_AJ_G0018509.1 mouse_genomes_project 11 67436312 67438131 + MGP_AJ_P0029958 Sat2 protein_coding protein_coding MGP_AJ_T0012537.1 MGP_AJ_G0010632.1 mouse_genomes_project 11 23973612 23973831 + processed_pseudogene processed_pseudogene MGP_AJ_T0012613.1 MGP_AJ_G0010708.1 mouse_genomes_project 11 51619425 51620556 + processed_pseudogene processed_pseudogene MGP_AJ_T0029392.1 MGP_AJ_G0018384.1 mouse_genomes_project 11 57943399 57984434 + MGP_AJ_P0029392 Lrrc48 protein_coding unknown_likely_coding MGP_AJ_T0029393.1 MGP_AJ_G0018384.1 mouse_genomes_project 11 57943614 57962588 + MGP_AJ_P0029393 Lrrc48 protein_coding protein_coding MGP_AJ_T0029394.1 MGP_AJ_G0018384.1 mouse_genomes_project 11 57943614 57984537 + MGP_AJ_P0029394 Lrrc48 protein_coding protein_coding MGP_AJ_T0029395.1 MGP_AJ_G0018384.1 mouse_genomes_project 11 57943614 57967690 + MGP_AJ_P0029395 Lrrc48 protein_coding protein_coding MGP_AJ_T0029396.1 MGP_AJ_G0018384.1 mouse_genomes_project 11 57943642 57965504 + Lrrc48 protein_coding processed_transcript MGP_AJ_T0029397.1 MGP_AJ_G0018384.1 mouse_genomes_project 11 57943668 57984529 + MGP_AJ_P0029397 Lrrc48 protein_coding protein_coding MGP_AJ_T0012534.1 MGP_AJ_G0010629.1 mouse_genomes_project 11 23633884 23634353 + processed_pseudogene processed_pseudogene MGP_AJ_T0033074.1 MGP_AJ_G0019283.1 mouse_genomes_project 11 105452921 105555300 - MGP_AJ_P0033074 Smurf2 protein_coding protein_coding MGP_AJ_T0033075.1 MGP_AJ_G0019283.1 mouse_genomes_project 11 105454880 105554860 - Smurf2 protein_coding processed_transcript MGP_AJ_T0033076.1 MGP_AJ_G0019283.1 mouse_genomes_project 11 105454880 105555055 - MGP_AJ_P0033076 Smurf2 protein_coding protein_coding MGP_AJ_T0033077.1 MGP_AJ_G0019283.1 mouse_genomes_project 11 105455468 105554944 - MGP_AJ_P0033077 Smurf2 protein_coding protein_coding MGP_AJ_T0033078.1 MGP_AJ_G0019283.1 mouse_genomes_project 11 105457411 105461700 - Smurf2 protein_coding processed_transcript MGP_AJ_T0033079.1 MGP_AJ_G0019283.1 mouse_genomes_project 11 105463282 105471985 - Smurf2 protein_coding processed_transcript MGP_AJ_T0033754.1 MGP_AJ_G0019419.1 mouse_genomes_project 11 116668108 116678329 + MGP_AJ_P0033754 6030468B19Rik protein_coding protein_coding MGP_AJ_T0031968.1 MGP_AJ_G0019002.1 mouse_genomes_project 11 95950195 95952512 - MGP_AJ_P0031968 E130012A19Rik protein_coding protein_coding MGP_AJ_T0012651.1 MGP_AJ_G0010746.1 mouse_genomes_project 11 62931999 62932589 - processed_pseudogene processed_pseudogene MGP_AJ_T0012583.1 MGP_AJ_G0010678.1 mouse_genomes_project 11 42979337 42979726 + processed_pseudogene processed_pseudogene MGP_AJ_T0032360.1 MGP_AJ_G0019136.1 mouse_genomes_project 11 99191427 99210827 - MGP_AJ_P0032360 Kcnh4 protein_coding protein_coding MGP_AJ_T0032361.1 MGP_AJ_G0019136.1 mouse_genomes_project 11 99191433 99211029 - MGP_AJ_P0032361 Kcnh4 protein_coding protein_coding MGP_AJ_T0012779.1 MGP_AJ_G0010874.1 mouse_genomes_project 11 113723361 113723765 + processed_pseudogene processed_pseudogene MGP_AJ_T0100624.1 MGP_AJ_G0038590.1 mouse_genomes_project 11 96110186 96110323 - Snora21 snoRNA snoRNA MGP_AJ_T0028486.1 MGP_AJ_G0018120.1 mouse_genomes_project 11 30726253 30777478 - MGP_AJ_P0028486 Kcnip1 protein_coding protein_coding MGP_AJ_T0028487.1 MGP_AJ_G0018120.1 mouse_genomes_project 11 30726261 30946257 - MGP_AJ_P0028487 Kcnip1 protein_coding protein_coding MGP_AJ_T0028488.1 MGP_AJ_G0018120.1 mouse_genomes_project 11 30726261 30946315 - MGP_AJ_P0028488 Kcnip1 protein_coding protein_coding MGP_AJ_T0028489.1 MGP_AJ_G0018120.1 mouse_genomes_project 11 30737651 31096735 - Kcnip1 protein_coding processed_transcript MGP_AJ_T0028490.1 MGP_AJ_G0018120.1 mouse_genomes_project 11 30737975 31096571 - Kcnip1 protein_coding processed_transcript MGP_AJ_T0034033.1 MGP_AJ_G0019477.1 mouse_genomes_project 11 119459075 119460229 - MGP_AJ_P0034033 Ppp1r27 protein_coding protein_coding MGP_AJ_T0017177.1 MGP_AJ_G0015138.1 mouse_genomes_project 11 27777715 27783027 + Gm12100 processed_transcript processed_transcript MGP_AJ_T0031774.1 MGP_AJ_G0018950.1 mouse_genomes_project 11 93648543 93651677 + MGP_AJ_P0031774 Slc35b1 protein_coding protein_coding MGP_AJ_T0031775.1 MGP_AJ_G0018950.1 mouse_genomes_project 11 93648677 93655550 + MGP_AJ_P0031775 Slc35b1 protein_coding nonsense_mediated_decay MGP_AJ_T0031776.1 MGP_AJ_G0018950.1 mouse_genomes_project 11 93648688 93655551 + MGP_AJ_P0031776 Slc35b1 protein_coding protein_coding MGP_AJ_T0031777.1 MGP_AJ_G0018950.1 mouse_genomes_project 11 93648692 93650098 + Slc35b1 protein_coding retained_intron MGP_AJ_T0031778.1 MGP_AJ_G0018950.1 mouse_genomes_project 11 93653772 93654441 + Slc35b1 protein_coding retained_intron MGP_AJ_T0032789.1 MGP_AJ_G0019220.1 mouse_genomes_project 11 101539730 101563254 - MGP_AJ_P0032789 Dcakd protein_coding protein_coding MGP_AJ_T0032790.1 MGP_AJ_G0019220.1 mouse_genomes_project 11 101539732 101543234 - Dcakd protein_coding retained_intron MGP_AJ_T0032791.1 MGP_AJ_G0019220.1 mouse_genomes_project 11 101545452 101574219 - MGP_AJ_P0032791 Dcakd protein_coding protein_coding MGP_AJ_T0032792.1 MGP_AJ_G0019220.1 mouse_genomes_project 11 101572898 101574178 - Dcakd protein_coding retained_intron MGP_AJ_T0032793.1 MGP_AJ_G0019220.1 mouse_genomes_project 11 101573172 101574248 - Dcakd protein_coding processed_transcript MGP_AJ_T0098548.1 MGP_AJ_G0036532.1 mouse_genomes_project 11 106507637 106507749 + Gm27595 rRNA rRNA MGP_AJ_T0034210.1 MGP_AJ_G0019512.1 mouse_genomes_project 11 120178140 120232891 + MGP_AJ_P0034210 Foxk2 protein_coding protein_coding MGP_AJ_T0034211.1 MGP_AJ_G0019512.1 mouse_genomes_project 11 120213590 120219936 + Foxk2 protein_coding processed_transcript MGP_AJ_T0034212.1 MGP_AJ_G0019512.1 mouse_genomes_project 11 120221350 120222702 + Foxk2 protein_coding retained_intron MGP_AJ_T0006325.1 MGP_AJ_G0005275.1 mouse_genomes_project 11 94460575 94461825 + Gm11535 lincRNA lincRNA MGP_AJ_T0029178.1 MGP_AJ_G0018307.1 mouse_genomes_project 11 55113184 55255187 + MGP_AJ_P0029178 Galnt10 protein_coding protein_coding MGP_AJ_T0029179.1 MGP_AJ_G0018307.1 mouse_genomes_project 11 55113207 55196588 + MGP_AJ_P0029179 Galnt10 protein_coding protein_coding MGP_AJ_T0028290.1 MGP_AJ_G0018072.1 mouse_genomes_project 11 23512142 23512763 + MGP_AJ_P0028290 Gm6899 protein_coding protein_coding MGP_AJ_T0029945.1 MGP_AJ_G0018506.1 mouse_genomes_project 11 67392057 67402113 + Trp53 protein_coding processed_transcript MGP_AJ_T0029946.1 MGP_AJ_G0018506.1 mouse_genomes_project 11 67398499 67403037 + MGP_AJ_P0029946 Trp53 protein_coding protein_coding MGP_AJ_T0029947.1 MGP_AJ_G0018506.1 mouse_genomes_project 11 67398499 67403485 + MGP_AJ_P0029947 Trp53 protein_coding protein_coding MGP_AJ_T0029948.1 MGP_AJ_G0018506.1 mouse_genomes_project 11 67400302 67401429 + Trp53 protein_coding processed_transcript MGP_AJ_T0031742.1 MGP_AJ_G0018943.1 mouse_genomes_project 11 93285956 93301012 - MGP_AJ_P0031742 Pdk2 protein_coding protein_coding MGP_AJ_T0031743.1 MGP_AJ_G0018943.1 mouse_genomes_project 11 93286667 93288295 - Pdk2 protein_coding processed_transcript MGP_AJ_T0031744.1 MGP_AJ_G0018943.1 mouse_genomes_project 11 93288446 93289132 - Pdk2 protein_coding processed_transcript MGP_AJ_T0031745.1 MGP_AJ_G0018943.1 mouse_genomes_project 11 93289361 93300217 - Pdk2 protein_coding processed_transcript MGP_AJ_T0031746.1 MGP_AJ_G0018943.1 mouse_genomes_project 11 93291589 93300533 - Pdk2 protein_coding processed_transcript MGP_AJ_T0029159.1 MGP_AJ_G0018301.1 mouse_genomes_project 11 52957213 52993779 + MGP_AJ_P0029159 G3bp1 protein_coding protein_coding MGP_AJ_T0029160.1 MGP_AJ_G0018301.1 mouse_genomes_project 11 52957246 52975443 + G3bp1 protein_coding processed_transcript MGP_AJ_T0029161.1 MGP_AJ_G0018301.1 mouse_genomes_project 11 52957267 52986053 + MGP_AJ_P0029161 G3bp1 protein_coding unknown_likely_coding MGP_AJ_T0099358.1 MGP_AJ_G0037324.1 mouse_genomes_project 11 85602211 85602381 + Gm22068 snRNA snRNA MGP_AJ_T0099332.1 MGP_AJ_G0037298.1 mouse_genomes_project 11 59031501 59031608 + Gm25929 snRNA snRNA MGP_AJ_T0006360.1 MGP_AJ_G0005300.1 mouse_genomes_project 11 113188256 113223489 - 4932435O22Rik lincRNA lincRNA MGP_AJ_T0006361.1 MGP_AJ_G0005300.1 mouse_genomes_project 11 113188493 113198613 - 4932435O22Rik lincRNA lincRNA MGP_AJ_T0003278.1 MGP_AJ_G0003025.1 mouse_genomes_project 11 95214630 95220409 - Gm11525 antisense antisense MGP_AJ_T0102260.1 MGP_AJ_G0040003.1 mouse_genomes_project 11 98355193 98355610 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0029204.1 MGP_AJ_G0018317.1 mouse_genomes_project 11 55763133 55782731 + MGP_AJ_P0029204 protein_coding protein_coding MGP_AJ_T0028242.1 MGP_AJ_G0018062.1 mouse_genomes_project 11 20491221 20563522 - MGP_AJ_P0028242 0610010F05Rik protein_coding nonsense_mediated_decay MGP_AJ_T0028243.1 MGP_AJ_G0018062.1 mouse_genomes_project 11 20499459 20563530 - MGP_AJ_P0028243 0610010F05Rik protein_coding protein_coding MGP_AJ_T0028244.1 MGP_AJ_G0018062.1 mouse_genomes_project 11 20502848 20525532 - MGP_AJ_P0028244 0610010F05Rik protein_coding protein_coding MGP_AJ_T0028245.1 MGP_AJ_G0018062.1 mouse_genomes_project 11 20558849 20563604 - MGP_AJ_P0028245 0610010F05Rik protein_coding protein_coding MGP_AJ_T0099382.1 MGP_AJ_G0037348.1 mouse_genomes_project 11 107728866 107728973 - Gm24149 snRNA snRNA MGP_AJ_T0033184.1 MGP_AJ_G0019305.1 mouse_genomes_project 11 108322281 108326837 + Prkar1a protein_coding processed_transcript MGP_AJ_T0033185.1 MGP_AJ_G0019305.1 mouse_genomes_project 11 108322281 108343277 + MGP_AJ_P0033185 Prkar1a protein_coding protein_coding MGP_AJ_T0033186.1 MGP_AJ_G0019305.1 mouse_genomes_project 11 108323451 108335371 + MGP_AJ_P0033186 Prkar1a protein_coding protein_coding MGP_AJ_T0033187.1 MGP_AJ_G0019305.1 mouse_genomes_project 11 108323797 108343277 + MGP_AJ_P0033187 Prkar1a protein_coding protein_coding MGP_AJ_T0033188.1 MGP_AJ_G0019305.1 mouse_genomes_project 11 108339564 108340597 + Prkar1a protein_coding processed_transcript MGP_AJ_T0030078.1 MGP_AJ_G0018537.1 mouse_genomes_project 11 67738388 67743050 - MGP_AJ_P0030078 Eif5a protein_coding protein_coding MGP_AJ_T0030079.1 MGP_AJ_G0018537.1 mouse_genomes_project 11 67739128 67742591 - MGP_AJ_P0030079 Eif5a protein_coding protein_coding MGP_AJ_T0031183.1 MGP_AJ_G0018802.1 mouse_genomes_project 11 80960167 80993860 + MGP_AJ_P0031183 Unc45b protein_coding protein_coding MGP_AJ_T0031184.1 MGP_AJ_G0018802.1 mouse_genomes_project 11 80960870 80993860 + MGP_AJ_P0031184 Unc45b protein_coding protein_coding MGP_AJ_T0031185.1 MGP_AJ_G0018802.1 mouse_genomes_project 11 80960870 80993860 + MGP_AJ_P0031185 Unc45b protein_coding protein_coding MGP_AJ_T0031186.1 MGP_AJ_G0018802.1 mouse_genomes_project 11 80979095 80979882 + Unc45b protein_coding processed_transcript MGP_AJ_T0031187.1 MGP_AJ_G0018802.1 mouse_genomes_project 11 80983971 80988081 + Unc45b protein_coding processed_transcript MGP_AJ_T0032315.1 MGP_AJ_G0019127.1 mouse_genomes_project 11 98995645 99023399 + MGP_AJ_P0032315 Ttc25 protein_coding protein_coding MGP_AJ_T0032316.1 MGP_AJ_G0019127.1 mouse_genomes_project 11 98995732 99020232 + Ttc25 protein_coding retained_intron MGP_AJ_T0032317.1 MGP_AJ_G0019127.1 mouse_genomes_project 11 98995748 99000247 + Ttc25 protein_coding retained_intron MGP_AJ_T0032318.1 MGP_AJ_G0019127.1 mouse_genomes_project 11 98995839 99023400 + MGP_AJ_P0032318 Ttc25 protein_coding protein_coding MGP_AJ_T0032319.1 MGP_AJ_G0019127.1 mouse_genomes_project 11 98999583 99000365 + Ttc25 protein_coding retained_intron MGP_AJ_T0006179.1 MGP_AJ_G0005159.1 mouse_genomes_project 11 15640697 15644869 - Gm28401 lincRNA lincRNA MGP_AJ_T0006180.1 MGP_AJ_G0005159.1 mouse_genomes_project 11 15640792 15644888 - Gm28401 lincRNA lincRNA MGP_AJ_T0028210.1 MGP_AJ_G0018057.1 mouse_genomes_project 11 19932633 19945166 + MGP_AJ_P0028210 Fam161a protein_coding protein_coding MGP_AJ_T0028211.1 MGP_AJ_G0018057.1 mouse_genomes_project 11 19933543 19954827 + MGP_AJ_P0028211 Fam161a protein_coding protein_coding MGP_AJ_T0028212.1 MGP_AJ_G0018057.1 mouse_genomes_project 11 19933567 19948650 + MGP_AJ_P0028212 Fam161a protein_coding protein_coding MGP_AJ_T0028213.1 MGP_AJ_G0018057.1 mouse_genomes_project 11 19938604 19948640 + MGP_AJ_P0028213 Fam161a protein_coding protein_coding MGP_AJ_T0028214.1 MGP_AJ_G0018057.1 mouse_genomes_project 11 19945399 19956698 + MGP_AJ_P0028214 Fam161a protein_coding protein_coding MGP_AJ_T0028215.1 MGP_AJ_G0018057.1 mouse_genomes_project 11 19945485 19948639 + MGP_AJ_P0028215 Fam161a protein_coding protein_coding MGP_AJ_T0029082.1 MGP_AJ_G0018283.1 mouse_genomes_project 11 51766983 51824999 + MGP_AJ_P0029082 Acsl6 protein_coding protein_coding MGP_AJ_T0029083.1 MGP_AJ_G0018283.1 mouse_genomes_project 11 51767000 51789007 + MGP_AJ_P0029083 Acsl6 protein_coding protein_coding MGP_AJ_T0029084.1 MGP_AJ_G0018283.1 mouse_genomes_project 11 51767180 51825003 + MGP_AJ_P0029084 Acsl6 protein_coding protein_coding MGP_AJ_T0029085.1 MGP_AJ_G0018283.1 mouse_genomes_project 11 51767180 51828233 + MGP_AJ_P0029085 Acsl6 protein_coding protein_coding MGP_AJ_T0029086.1 MGP_AJ_G0018283.1 mouse_genomes_project 11 51767263 51828238 + MGP_AJ_P0029086 Acsl6 protein_coding protein_coding MGP_AJ_T0029087.1 MGP_AJ_G0018283.1 mouse_genomes_project 11 51776650 51788460 + MGP_AJ_P0029087 Acsl6 protein_coding protein_coding MGP_AJ_T0029088.1 MGP_AJ_G0018283.1 mouse_genomes_project 11 51778100 51800514 + MGP_AJ_P0029088 Acsl6 protein_coding protein_coding MGP_AJ_T0029089.1 MGP_AJ_G0018283.1 mouse_genomes_project 11 51778100 51802079 + MGP_AJ_P0029089 Acsl6 protein_coding protein_coding MGP_AJ_T0029090.1 MGP_AJ_G0018283.1 mouse_genomes_project 11 51783385 51801857 + MGP_AJ_P0029090 Acsl6 protein_coding protein_coding MGP_AJ_T0029091.1 MGP_AJ_G0018283.1 mouse_genomes_project 11 51798283 51825003 + Acsl6 protein_coding processed_transcript MGP_AJ_T0029092.1 MGP_AJ_G0018283.1 mouse_genomes_project 11 51808786 51824992 + MGP_AJ_P0029092 Acsl6 protein_coding protein_coding MGP_AJ_T0030084.1 MGP_AJ_G0018539.1 mouse_genomes_project 11 67764216 67769853 - Slc2a4 protein_coding retained_intron MGP_AJ_T0030085.1 MGP_AJ_G0018539.1 mouse_genomes_project 11 67765046 67769659 - MGP_AJ_P0030085 Slc2a4 protein_coding protein_coding MGP_AJ_T0030086.1 MGP_AJ_G0018539.1 mouse_genomes_project 11 67765469 67769842 - MGP_AJ_P0030086 Slc2a4 protein_coding protein_coding MGP_AJ_T0030087.1 MGP_AJ_G0018539.1 mouse_genomes_project 11 67766946 67769652 - MGP_AJ_P0030087 Slc2a4 protein_coding nonsense_mediated_decay MGP_AJ_T0030088.1 MGP_AJ_G0018539.1 mouse_genomes_project 11 67766946 67769825 - MGP_AJ_P0030088 Slc2a4 protein_coding nonsense_mediated_decay MGP_AJ_T0030089.1 MGP_AJ_G0018539.1 mouse_genomes_project 11 67767240 67769823 - MGP_AJ_P0030089 Slc2a4 protein_coding protein_coding MGP_AJ_T0030090.1 MGP_AJ_G0018539.1 mouse_genomes_project 11 67767746 67769832 - MGP_AJ_P0030090 Slc2a4 protein_coding protein_coding MGP_AJ_T0009773.1 MGP_AJ_G0007895.1 mouse_genomes_project 11 118917166 118917253 + Mir3065 miRNA miRNA MGP_AJ_T0029537.1 MGP_AJ_G0018413.1 mouse_genomes_project 11 59372414 59422539 - Slc5a10 protein_coding processed_transcript MGP_AJ_T0029538.1 MGP_AJ_G0018413.1 mouse_genomes_project 11 59372415 59421659 - MGP_AJ_P0029538 Slc5a10 protein_coding protein_coding MGP_AJ_T0029539.1 MGP_AJ_G0018413.1 mouse_genomes_project 11 59372415 59422512 - MGP_AJ_P0029539 Slc5a10 protein_coding protein_coding MGP_AJ_T0029540.1 MGP_AJ_G0018413.1 mouse_genomes_project 11 59372425 59421710 - MGP_AJ_P0029540 Slc5a10 protein_coding protein_coding MGP_AJ_T0012532.1 MGP_AJ_G0010627.1 mouse_genomes_project 11 21486479 21488004 - processed_pseudogene processed_pseudogene MGP_AJ_T0009717.1 MGP_AJ_G0007839.1 mouse_genomes_project 11 75018066 75018175 - Mir423 miRNA miRNA MGP_AJ_T0006310.1 MGP_AJ_G0005264.1 mouse_genomes_project 11 86941993 86945958 + C030037D09Rik lincRNA lincRNA MGP_AJ_T0006311.1 MGP_AJ_G0005264.1 mouse_genomes_project 11 86942152 86953428 + C030037D09Rik lincRNA lincRNA MGP_AJ_T0006312.1 MGP_AJ_G0005264.1 mouse_genomes_project 11 86943837 86947531 + C030037D09Rik lincRNA lincRNA MGP_AJ_T0028742.1 MGP_AJ_G0018193.1 mouse_genomes_project 11 46449901 46468803 + MGP_AJ_P0028742 Mgat1 protein_coding protein_coding MGP_AJ_T0028743.1 MGP_AJ_G0018193.1 mouse_genomes_project 11 46449956 46468808 + MGP_AJ_P0028743 Mgat1 protein_coding protein_coding MGP_AJ_T0028744.1 MGP_AJ_G0018193.1 mouse_genomes_project 11 46450119 46451157 + Mgat1 protein_coding processed_transcript MGP_AJ_T0028745.1 MGP_AJ_G0018193.1 mouse_genomes_project 11 46450273 46451114 + Mgat1 protein_coding processed_transcript MGP_AJ_T0028746.1 MGP_AJ_G0018193.1 mouse_genomes_project 11 46450927 46466472 + Mgat1 protein_coding processed_transcript MGP_AJ_T0028747.1 MGP_AJ_G0018193.1 mouse_genomes_project 11 46453173 46468776 + MGP_AJ_P0028747 Mgat1 protein_coding protein_coding MGP_AJ_T0028748.1 MGP_AJ_G0018193.1 mouse_genomes_project 11 46453179 46466603 + Mgat1 protein_coding processed_transcript MGP_AJ_T0028749.1 MGP_AJ_G0018193.1 mouse_genomes_project 11 46454653 46457330 + Mgat1 protein_coding processed_transcript MGP_AJ_T0028750.1 MGP_AJ_G0018193.1 mouse_genomes_project 11 46456204 46468811 + MGP_AJ_P0028750 Mgat1 protein_coding protein_coding MGP_AJ_T0028751.1 MGP_AJ_G0018193.1 mouse_genomes_project 11 46456257 46463665 + Mgat1 protein_coding processed_transcript MGP_AJ_T0028752.1 MGP_AJ_G0018193.1 mouse_genomes_project 11 46456264 46466472 + Mgat1 protein_coding processed_transcript MGP_AJ_T0028753.1 MGP_AJ_G0018193.1 mouse_genomes_project 11 46456282 46467072 + MGP_AJ_P0028753 Mgat1 protein_coding protein_coding MGP_AJ_T0028754.1 MGP_AJ_G0018193.1 mouse_genomes_project 11 46461936 46463527 + Mgat1 protein_coding processed_transcript MGP_AJ_T0100562.1 MGP_AJ_G0038528.1 mouse_genomes_project 11 716265 716364 + Gm24013 snoRNA snoRNA MGP_AJ_T0003274.1 MGP_AJ_G0003022.1 mouse_genomes_project 11 94620791 94626624 - Gm11536 antisense antisense MGP_AJ_T0028008.1 MGP_AJ_G0018008.1 mouse_genomes_project 11 5405359 5643368 - MGP_AJ_P0028008 Tns3 protein_coding protein_coding MGP_AJ_T0028009.1 MGP_AJ_G0018008.1 mouse_genomes_project 11 5424527 5441829 - Tns3 protein_coding processed_transcript MGP_AJ_T0028010.1 MGP_AJ_G0018008.1 mouse_genomes_project 11 5515597 5523215 - Tns3 protein_coding processed_transcript MGP_AJ_T0028011.1 MGP_AJ_G0018008.1 mouse_genomes_project 11 5523528 5556480 - Tns3 protein_coding processed_transcript MGP_AJ_T0034235.1 MGP_AJ_G0019519.1 mouse_genomes_project 11 120521146 120578629 - MGP_AJ_P0034235 B3gntl1 protein_coding protein_coding MGP_AJ_T0034236.1 MGP_AJ_G0019519.1 mouse_genomes_project 11 120532217 120578629 - MGP_AJ_P0034236 B3gntl1 protein_coding protein_coding MGP_AJ_T0006197.1 MGP_AJ_G0005176.1 mouse_genomes_project 11 21652126 21661840 - Gm10466 lincRNA lincRNA MGP_AJ_T0028772.1 MGP_AJ_G0018205.1 mouse_genomes_project 11 47063138 47076705 + Gfpt2 protein_coding retained_intron MGP_AJ_T0028773.1 MGP_AJ_G0018205.1 mouse_genomes_project 11 47063147 47107566 + MGP_AJ_P0028773 Gfpt2 protein_coding protein_coding MGP_AJ_T0003326.1 MGP_AJ_G0003066.1 mouse_genomes_project 11 106650746 106651357 + Gm11657 antisense antisense MGP_AJ_T0029242.1 MGP_AJ_G0018336.1 mouse_genomes_project 11 56125999 56137902 + MGP_AJ_P0029242 Trim58 protein_coding protein_coding MGP_AJ_T0031423.1 MGP_AJ_G0018865.1 mouse_genomes_project 11 85247876 85257665 - MGP_AJ_P0031423 Smg8 protein_coding protein_coding MGP_AJ_T0031424.1 MGP_AJ_G0018865.1 mouse_genomes_project 11 85247880 85256273 - MGP_AJ_P0031424 Smg8 protein_coding protein_coding MGP_AJ_T0102259.1 MGP_AJ_G0040002.1 mouse_genomes_project 11 98290437 98290640 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0029012.1 MGP_AJ_G0018267.1 mouse_genomes_project 11 50920522 50935877 + MGP_AJ_P0029012 Sept8 protein_coding protein_coding MGP_AJ_T0029013.1 MGP_AJ_G0018267.1 mouse_genomes_project 11 50921011 50944583 + MGP_AJ_P0029013 Sept8 protein_coding protein_coding MGP_AJ_T0029014.1 MGP_AJ_G0018267.1 mouse_genomes_project 11 50921035 50950053 + MGP_AJ_P0029014 Sept8 protein_coding protein_coding MGP_AJ_T0029015.1 MGP_AJ_G0018267.1 mouse_genomes_project 11 50921065 50944584 + MGP_AJ_P0029015 Sept8 protein_coding protein_coding MGP_AJ_T0029016.1 MGP_AJ_G0018267.1 mouse_genomes_project 11 50921173 50942386 + MGP_AJ_P0029016 Sept8 protein_coding protein_coding MGP_AJ_T0029017.1 MGP_AJ_G0018267.1 mouse_genomes_project 11 50921192 50942335 + MGP_AJ_P0029017 Sept8 protein_coding protein_coding MGP_AJ_T0029018.1 MGP_AJ_G0018267.1 mouse_genomes_project 11 50933311 50938540 + Sept8 protein_coding processed_transcript MGP_AJ_T0028371.1 MGP_AJ_G0018087.1 mouse_genomes_project 11 27408714 27457895 - MGP_AJ_P0028371 4930505A04Rik protein_coding nonsense_mediated_decay MGP_AJ_T0028372.1 MGP_AJ_G0018087.1 mouse_genomes_project 11 27408714 27457876 - MGP_AJ_P0028372 4930505A04Rik protein_coding protein_coding MGP_AJ_T0012762.1 MGP_AJ_G0010857.1 mouse_genomes_project 11 104489573 104490582 + processed_pseudogene processed_pseudogene MGP_AJ_T0009669.1 MGP_AJ_G0007791.1 mouse_genomes_project 11 35170782 35170859 - Gm25693 miRNA miRNA MGP_AJ_T0028419.1 MGP_AJ_G0018101.1 mouse_genomes_project 11 29256202 29269031 - MGP_AJ_P0028419 Rhbdf1 protein_coding protein_coding MGP_AJ_T0028420.1 MGP_AJ_G0018101.1 mouse_genomes_project 11 29256203 29264016 - Rhbdf1 protein_coding retained_intron MGP_AJ_T0028421.1 MGP_AJ_G0018101.1 mouse_genomes_project 11 29256204 29269011 - MGP_AJ_P0028421 Rhbdf1 protein_coding nonsense_mediated_decay MGP_AJ_T0028422.1 MGP_AJ_G0018101.1 mouse_genomes_project 11 29256421 29257757 - MGP_AJ_P0028422 Rhbdf1 protein_coding protein_coding MGP_AJ_T0028423.1 MGP_AJ_G0018101.1 mouse_genomes_project 11 29256567 29257517 - Rhbdf1 protein_coding retained_intron MGP_AJ_T0028424.1 MGP_AJ_G0018101.1 mouse_genomes_project 11 29257016 29257912 - Rhbdf1 protein_coding retained_intron MGP_AJ_T0028425.1 MGP_AJ_G0018101.1 mouse_genomes_project 11 29260948 29269011 - MGP_AJ_P0028425 Rhbdf1 protein_coding nonsense_mediated_decay MGP_AJ_T0028426.1 MGP_AJ_G0018101.1 mouse_genomes_project 11 29261730 29268975 - MGP_AJ_P0028426 Rhbdf1 protein_coding protein_coding MGP_AJ_T0028427.1 MGP_AJ_G0018101.1 mouse_genomes_project 11 29262671 29268990 - MGP_AJ_P0028427 Rhbdf1 protein_coding protein_coding MGP_AJ_T0012529.1 MGP_AJ_G0010624.1 mouse_genomes_project 11 19681504 19682931 - processed_pseudogene processed_pseudogene MGP_AJ_T0012787.1 MGP_AJ_G0010882.1 mouse_genomes_project 11 115974736 115975184 + processed_pseudogene processed_pseudogene MGP_AJ_T0031657.1 MGP_AJ_G0018923.1 mouse_genomes_project 11 92571612 92621811 - MGP_AJ_P0031657 Abcc3 protein_coding protein_coding MGP_AJ_T0031658.1 MGP_AJ_G0018923.1 mouse_genomes_project 11 92571615 92621811 - MGP_AJ_P0031658 Abcc3 protein_coding protein_coding MGP_AJ_T0031659.1 MGP_AJ_G0018923.1 mouse_genomes_project 11 92571970 92579607 - Abcc3 protein_coding processed_transcript MGP_AJ_T0031660.1 MGP_AJ_G0018923.1 mouse_genomes_project 11 92592563 92596707 - Abcc3 protein_coding processed_transcript MGP_AJ_T0031661.1 MGP_AJ_G0018923.1 mouse_genomes_project 11 92593211 92621755 - Abcc3 protein_coding processed_transcript MGP_AJ_T0031662.1 MGP_AJ_G0018923.1 mouse_genomes_project 11 92603371 92621832 - Abcc3 protein_coding processed_transcript MGP_AJ_T0031914.1 MGP_AJ_G0018991.1 mouse_genomes_project 11 95359896 95378355 + MGP_AJ_P0031914 Osbpl7 protein_coding protein_coding MGP_AJ_T0031915.1 MGP_AJ_G0018991.1 mouse_genomes_project 11 95360088 95362070 + Osbpl7 protein_coding processed_transcript MGP_AJ_T0031916.1 MGP_AJ_G0018991.1 mouse_genomes_project 11 95361548 95378360 + MGP_AJ_P0031916 Osbpl7 protein_coding protein_coding MGP_AJ_T0031917.1 MGP_AJ_G0018991.1 mouse_genomes_project 11 95361572 95362222 + Osbpl7 protein_coding retained_intron MGP_AJ_T0031918.1 MGP_AJ_G0018991.1 mouse_genomes_project 11 95362452 95366118 + Osbpl7 protein_coding retained_intron MGP_AJ_T0031919.1 MGP_AJ_G0018991.1 mouse_genomes_project 11 95376332 95377722 + Osbpl7 protein_coding retained_intron MGP_AJ_T0028702.1 MGP_AJ_G0018178.1 mouse_genomes_project 11 45985938 45995684 - Irgm1 protein_coding processed_transcript MGP_AJ_T0028703.1 MGP_AJ_G0018178.1 mouse_genomes_project 11 45989215 45995375 - MGP_AJ_P0028703 Irgm1 protein_coding protein_coding MGP_AJ_T0028704.1 MGP_AJ_G0018178.1 mouse_genomes_project 11 45990088 45995421 - MGP_AJ_P0028704 Irgm1 protein_coding protein_coding MGP_AJ_T0102251.1 MGP_AJ_G0039994.1 mouse_genomes_project 11 92992736 92993515 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0033916.1 MGP_AJ_G0019455.1 mouse_genomes_project 11 118844646 118905021 + MGP_AJ_P0033916 Baiap2 protein_coding protein_coding MGP_AJ_T0033917.1 MGP_AJ_G0019455.1 mouse_genomes_project 11 118844646 118909182 + MGP_AJ_P0033917 Baiap2 protein_coding protein_coding MGP_AJ_T0033918.1 MGP_AJ_G0019455.1 mouse_genomes_project 11 118844646 118905021 + MGP_AJ_P0033918 Baiap2 protein_coding protein_coding MGP_AJ_T0033919.1 MGP_AJ_G0019455.1 mouse_genomes_project 11 118844646 118905021 + MGP_AJ_P0033919 Baiap2 protein_coding protein_coding MGP_AJ_T0033920.1 MGP_AJ_G0019455.1 mouse_genomes_project 11 118844646 118909182 + MGP_AJ_P0033920 Baiap2 protein_coding protein_coding MGP_AJ_T0033921.1 MGP_AJ_G0019455.1 mouse_genomes_project 11 118844999 118862415 + Baiap2 protein_coding processed_transcript MGP_AJ_T0033922.1 MGP_AJ_G0019455.1 mouse_genomes_project 11 118845355 118883805 + Baiap2 protein_coding processed_transcript MGP_AJ_T0033923.1 MGP_AJ_G0019455.1 mouse_genomes_project 11 118861903 118862270 + Baiap2 protein_coding processed_transcript MGP_AJ_T0033924.1 MGP_AJ_G0019455.1 mouse_genomes_project 11 118900070 118904599 + Baiap2 protein_coding processed_transcript MGP_AJ_T0028927.1 MGP_AJ_G0018243.1 mouse_genomes_project 11 49019740 49023229 - MGP_AJ_P0028927 0610009B22Rik protein_coding protein_coding MGP_AJ_T0028928.1 MGP_AJ_G0018243.1 mouse_genomes_project 11 49019740 49023008 - MGP_AJ_P0028928 0610009B22Rik protein_coding protein_coding MGP_AJ_T0028190.1 MGP_AJ_G0018052.1 mouse_genomes_project 11 19758289 19907190 - MGP_AJ_P0028190 Gm28048 protein_coding protein_coding MGP_AJ_T0009767.1 MGP_AJ_G0007889.1 mouse_genomes_project 11 115925080 115925157 + Gm24323 miRNA miRNA MGP_AJ_T0028788.1 MGP_AJ_G0018208.1 mouse_genomes_project 11 47294842 47374157 + MGP_AJ_P0028788 Rnf130 protein_coding protein_coding MGP_AJ_T0028789.1 MGP_AJ_G0018208.1 mouse_genomes_project 11 47363267 47374351 + Rnf130 protein_coding processed_transcript MGP_AJ_T0012461.1 MGP_AJ_G0010556.1 mouse_genomes_project 11 1050950 1051420 + processed_pseudogene processed_pseudogene MGP_AJ_T0032905.1 MGP_AJ_G0019245.1 mouse_genomes_project 11 103130678 103168594 + MGP_AJ_P0032905 Myl4 protein_coding protein_coding MGP_AJ_T0032906.1 MGP_AJ_G0019245.1 mouse_genomes_project 11 103156824 103167127 + MGP_AJ_P0032906 Myl4 protein_coding protein_coding MGP_AJ_T0032907.1 MGP_AJ_G0019245.1 mouse_genomes_project 11 103158355 103168594 + MGP_AJ_P0032907 Myl4 protein_coding protein_coding MGP_AJ_T0032908.1 MGP_AJ_G0019245.1 mouse_genomes_project 11 103158387 103166393 + MGP_AJ_P0032908 Myl4 protein_coding nonsense_mediated_decay MGP_AJ_T0032909.1 MGP_AJ_G0019245.1 mouse_genomes_project 11 103158651 103168594 + MGP_AJ_P0032909 Myl4 protein_coding protein_coding MGP_AJ_T0032910.1 MGP_AJ_G0019245.1 mouse_genomes_project 11 103161695 103168588 + Myl4 protein_coding retained_intron MGP_AJ_T0032911.1 MGP_AJ_G0019245.1 mouse_genomes_project 11 103163409 103167726 + Myl4 protein_coding retained_intron MGP_AJ_T0032912.1 MGP_AJ_G0019245.1 mouse_genomes_project 11 103166342 103177133 + MGP_AJ_P0032912 Myl4 protein_coding protein_coding MGP_AJ_T0003301.1 MGP_AJ_G0003043.1 mouse_genomes_project 11 100462319 100470512 + 4930417O22Rik antisense antisense MGP_AJ_T0009764.1 MGP_AJ_G0007886.1 mouse_genomes_project 11 114255610 114255710 - Mir3968 miRNA miRNA MGP_AJ_T0012494.1 MGP_AJ_G0010589.1 mouse_genomes_project 11 13417952 13419323 + processed_pseudogene processed_pseudogene MGP_AJ_T0027905.1 MGP_AJ_G0017983.1 mouse_genomes_project 11 2840154 2846248 - MGP_AJ_P0027905 Pold2 protein_coding protein_coding MGP_AJ_T0027906.1 MGP_AJ_G0017983.1 mouse_genomes_project 11 2840162 2841166 - Pold2 protein_coding retained_intron MGP_AJ_T0027907.1 MGP_AJ_G0017983.1 mouse_genomes_project 11 2842038 2845621 - MGP_AJ_P0027907 Pold2 protein_coding protein_coding MGP_AJ_T0027908.1 MGP_AJ_G0017983.1 mouse_genomes_project 11 2842075 2844723 - Pold2 protein_coding retained_intron MGP_AJ_T0027909.1 MGP_AJ_G0017983.1 mouse_genomes_project 11 2843128 2846168 - Pold2 protein_coding processed_transcript MGP_AJ_T0012510.1 MGP_AJ_G0010605.1 mouse_genomes_project 11 17213494 17213815 - processed_pseudogene processed_pseudogene MGP_AJ_T0003324.1 MGP_AJ_G0003064.1 mouse_genomes_project 11 106030751 106032740 + Gm11712 antisense antisense MGP_AJ_T0030808.1 MGP_AJ_G0018712.1 mouse_genomes_project 11 75408328 75416411 + MGP_AJ_P0030808 Coro6 protein_coding protein_coding MGP_AJ_T0030809.1 MGP_AJ_G0018712.1 mouse_genomes_project 11 75408562 75409877 + MGP_AJ_P0030809 Coro6 protein_coding protein_coding MGP_AJ_T0030810.1 MGP_AJ_G0018712.1 mouse_genomes_project 11 75409758 75415526 + MGP_AJ_P0030810 Coro6 protein_coding protein_coding MGP_AJ_T0030811.1 MGP_AJ_G0018712.1 mouse_genomes_project 11 75409758 75415526 + MGP_AJ_P0030811 Coro6 protein_coding protein_coding MGP_AJ_T0030812.1 MGP_AJ_G0018712.1 mouse_genomes_project 11 75409833 75415426 + MGP_AJ_P0030812 Coro6 protein_coding protein_coding MGP_AJ_T0030813.1 MGP_AJ_G0018712.1 mouse_genomes_project 11 75409833 75415426 + MGP_AJ_P0030813 Coro6 protein_coding protein_coding MGP_AJ_T0011312.1 MGP_AJ_G0009434.1 mouse_genomes_project 11 94483166 94483302 - Gm27605 misc_RNA misc_RNA MGP_AJ_T0030051.1 MGP_AJ_G0018534.1 mouse_genomes_project 11 67718175 67722572 - MGP_AJ_P0030051 2810408A11Rik protein_coding protein_coding MGP_AJ_T0030052.1 MGP_AJ_G0018534.1 mouse_genomes_project 11 67718181 67722564 - MGP_AJ_P0030052 2810408A11Rik protein_coding protein_coding MGP_AJ_T0030053.1 MGP_AJ_G0018534.1 mouse_genomes_project 11 67718186 67722616 - MGP_AJ_P0030053 2810408A11Rik protein_coding protein_coding MGP_AJ_T0030054.1 MGP_AJ_G0018534.1 mouse_genomes_project 11 67718186 67722653 - MGP_AJ_P0030054 2810408A11Rik protein_coding nonsense_mediated_decay MGP_AJ_T0030055.1 MGP_AJ_G0018534.1 mouse_genomes_project 11 67718186 67722635 - MGP_AJ_P0030055 2810408A11Rik protein_coding protein_coding MGP_AJ_T0030056.1 MGP_AJ_G0018534.1 mouse_genomes_project 11 67718289 67722665 - 2810408A11Rik protein_coding retained_intron MGP_AJ_T0030057.1 MGP_AJ_G0018534.1 mouse_genomes_project 11 67718289 67722635 - MGP_AJ_P0030057 2810408A11Rik protein_coding nonsense_mediated_decay MGP_AJ_T0030058.1 MGP_AJ_G0018534.1 mouse_genomes_project 11 67719028 67720470 - 2810408A11Rik protein_coding retained_intron MGP_AJ_T0030059.1 MGP_AJ_G0018534.1 mouse_genomes_project 11 67720033 67722617 - MGP_AJ_P0030059 2810408A11Rik protein_coding protein_coding MGP_AJ_T0031005.1 MGP_AJ_G0018753.1 mouse_genomes_project 11 76508977 76516253 + MGP_AJ_P0031005 Ift20 protein_coding protein_coding MGP_AJ_T0031006.1 MGP_AJ_G0018753.1 mouse_genomes_project 11 76509044 76515904 + MGP_AJ_P0031006 Ift20 protein_coding protein_coding MGP_AJ_T0031007.1 MGP_AJ_G0018753.1 mouse_genomes_project 11 76509059 76516009 + MGP_AJ_P0031007 Ift20 protein_coding protein_coding MGP_AJ_T0031008.1 MGP_AJ_G0018753.1 mouse_genomes_project 11 76509061 76516009 + Ift20 protein_coding retained_intron MGP_AJ_T0031009.1 MGP_AJ_G0018753.1 mouse_genomes_project 11 76509089 76516009 + Ift20 protein_coding retained_intron MGP_AJ_T0028724.1 MGP_AJ_G0018190.1 mouse_genomes_project 11 46365803 46366742 + MGP_AJ_P0028724 Olfr1394 protein_coding protein_coding MGP_AJ_T0030577.1 MGP_AJ_G0018663.1 mouse_genomes_project 11 72588440 72639079 - Pafah1b1 protein_coding retained_intron MGP_AJ_T0030578.1 MGP_AJ_G0018663.1 mouse_genomes_project 11 72588440 72639414 - MGP_AJ_P0030578 Pafah1b1 protein_coding protein_coding MGP_AJ_T0030579.1 MGP_AJ_G0018663.1 mouse_genomes_project 11 72588441 72639062 - Pafah1b1 protein_coding retained_intron MGP_AJ_T0030580.1 MGP_AJ_G0018663.1 mouse_genomes_project 11 72588441 72638602 - MGP_AJ_P0030580 Pafah1b1 protein_coding protein_coding MGP_AJ_T0030581.1 MGP_AJ_G0018663.1 mouse_genomes_project 11 72603408 72637915 - MGP_AJ_P0030581 Pafah1b1 protein_coding protein_coding MGP_AJ_T0017253.1 MGP_AJ_G0015181.1 mouse_genomes_project 11 97038777 97039272 - Gm12356 processed_transcript processed_transcript MGP_AJ_T0027796.1 MGP_AJ_G0017961.1 mouse_genomes_project 11 1686977 1697969 - MGP_AJ_P0027796 Cabp7 protein_coding protein_coding MGP_AJ_T0017257.1 MGP_AJ_G0015185.1 mouse_genomes_project 11 102259611 102264904 + C130046K22Rik processed_transcript processed_transcript MGP_AJ_T0017258.1 MGP_AJ_G0015185.1 mouse_genomes_project 11 102259611 102284930 + C130046K22Rik processed_transcript processed_transcript MGP_AJ_T0033080.1 MGP_AJ_G0019284.1 mouse_genomes_project 11 105620088 105633092 - MGP_AJ_P0033080 protein_coding nonsense_mediated_decay MGP_AJ_T0033081.1 MGP_AJ_G0019284.1 mouse_genomes_project 11 105620092 105622994 - MGP_AJ_P0033081 protein_coding unknown_likely_coding MGP_AJ_T0033082.1 MGP_AJ_G0019284.1 mouse_genomes_project 11 105623035 105624022 - protein_coding retained_intron MGP_AJ_T0033083.1 MGP_AJ_G0019284.1 mouse_genomes_project 11 105623204 105632540 - MGP_AJ_P0033083 protein_coding protein_coding MGP_AJ_T0033084.1 MGP_AJ_G0019284.1 mouse_genomes_project 11 105623204 105632139 - MGP_AJ_P0033084 protein_coding protein_coding MGP_AJ_T0033085.1 MGP_AJ_G0019284.1 mouse_genomes_project 11 105623204 105633102 - MGP_AJ_P0033085 protein_coding protein_coding MGP_AJ_T0033086.1 MGP_AJ_G0019284.1 mouse_genomes_project 11 105627316 105633021 - MGP_AJ_P0033086 protein_coding protein_coding MGP_AJ_T0012568.1 MGP_AJ_G0010663.1 mouse_genomes_project 11 35357859 35359006 + processed_pseudogene processed_pseudogene MGP_AJ_T0030826.1 MGP_AJ_G0018715.1 mouse_genomes_project 11 75454281 75459553 - MGP_AJ_P0030826 Trp53i13 protein_coding protein_coding MGP_AJ_T0030827.1 MGP_AJ_G0018715.1 mouse_genomes_project 11 75454793 75458946 - Trp53i13 protein_coding processed_transcript MGP_AJ_T0030828.1 MGP_AJ_G0018715.1 mouse_genomes_project 11 75455152 75459218 - Trp53i13 protein_coding processed_transcript MGP_AJ_T0030829.1 MGP_AJ_G0018715.1 mouse_genomes_project 11 75455283 75461877 - MGP_AJ_P0030829 Trp53i13 protein_coding protein_coding MGP_AJ_T0030830.1 MGP_AJ_G0018715.1 mouse_genomes_project 11 75458926 75462126 - Trp53i13 protein_coding processed_transcript MGP_AJ_T0030622.1 MGP_AJ_G0018672.1 mouse_genomes_project 11 73090181 73104883 - MGP_AJ_P0030622 Dph1 protein_coding protein_coding MGP_AJ_T0030623.1 MGP_AJ_G0018672.1 mouse_genomes_project 11 73090234 73095831 - Dph1 protein_coding retained_intron MGP_AJ_T0030625.1 MGP_AJ_G0018672.1 mouse_genomes_project 11 73090834 73093820 - Dph1 protein_coding processed_transcript MGP_AJ_T0030626.1 MGP_AJ_G0018672.1 mouse_genomes_project 11 73091727 73096023 - Dph1 protein_coding processed_transcript MGP_AJ_T0030627.1 MGP_AJ_G0018672.1 mouse_genomes_project 11 73093332 73105605 - MGP_AJ_P0030627 Dph1 protein_coding protein_coding MGP_AJ_T0033518.1 MGP_AJ_G0019376.1 mouse_genomes_project 11 114762274 114796233 + MGP_AJ_P0033518 Sap30bp protein_coding protein_coding MGP_AJ_T0033519.1 MGP_AJ_G0019376.1 mouse_genomes_project 11 114762565 114786564 + Sap30bp protein_coding processed_transcript MGP_AJ_T0033520.1 MGP_AJ_G0019376.1 mouse_genomes_project 11 114762629 114767508 + Sap30bp protein_coding processed_transcript MGP_AJ_T0033521.1 MGP_AJ_G0019376.1 mouse_genomes_project 11 114762666 114795043 + Sap30bp protein_coding processed_transcript MGP_AJ_T0033522.1 MGP_AJ_G0019376.1 mouse_genomes_project 11 114762668 114793928 + MGP_AJ_P0033522 Sap30bp protein_coding unknown_likely_coding MGP_AJ_T0003154.1 MGP_AJ_G0002926.1 mouse_genomes_project 11 48135541 48136792 - Gm12660 antisense antisense MGP_AJ_T0012648.1 MGP_AJ_G0010743.1 mouse_genomes_project 11 60994900 60995133 - processed_pseudogene processed_pseudogene MGP_AJ_T0003220.1 MGP_AJ_G0002981.1 mouse_genomes_project 11 67250908 67256028 + Dnah2os antisense antisense MGP_AJ_T0029037.1 MGP_AJ_G0018272.1 mouse_genomes_project 11 51126962 51131276 + MGP_AJ_P0029037 Il5 protein_coding protein_coding MGP_AJ_T0029261.1 MGP_AJ_G0018350.1 mouse_genomes_project 11 56458601 56467295 + MGP_AJ_P0029261 protein_coding protein_coding MGP_AJ_T0029262.1 MGP_AJ_G0018350.1 mouse_genomes_project 11 56458648 56468074 + MGP_AJ_P0029262 protein_coding nonsense_mediated_decay MGP_AJ_T0029263.1 MGP_AJ_G0018350.1 mouse_genomes_project 11 56458753 56467881 + MGP_AJ_P0029263 protein_coding protein_coding MGP_AJ_T0029264.1 MGP_AJ_G0018350.1 mouse_genomes_project 11 56458753 56467881 + MGP_AJ_P0029264 protein_coding protein_coding MGP_AJ_T0032240.1 MGP_AJ_G0019097.1 mouse_genomes_project 11 98334088 98335011 + MGP_AJ_P0032240 protein_coding protein_coding MGP_AJ_T0031245.1 MGP_AJ_G0018826.1 mouse_genomes_project 11 81842248 81844582 + MGP_AJ_P0031245 Wfdc18 protein_coding protein_coding MGP_AJ_T0031246.1 MGP_AJ_G0018826.1 mouse_genomes_project 11 81842356 81844573 + MGP_AJ_P0031246 Wfdc18 protein_coding nonsense_mediated_decay MGP_AJ_T0031247.1 MGP_AJ_G0018826.1 mouse_genomes_project 11 81842358 81843932 + Wfdc18 protein_coding retained_intron MGP_AJ_T0012794.1 MGP_AJ_G0010889.1 mouse_genomes_project 11 120089696 120090151 - processed_pseudogene processed_pseudogene MGP_AJ_T0009691.1 MGP_AJ_G0007813.1 mouse_genomes_project 11 62352021 62352167 - Gm24275 miRNA miRNA MGP_AJ_T0032864.1 MGP_AJ_G0019237.1 mouse_genomes_project 11 102336662 102380586 + MGP_AJ_P0032864 Wnt3 protein_coding protein_coding MGP_AJ_T0030474.1 MGP_AJ_G0018617.1 mouse_genomes_project 11 70920456 70943654 + Camkk1 protein_coding retained_intron MGP_AJ_T0030475.1 MGP_AJ_G0018617.1 mouse_genomes_project 11 70920491 70943665 + MGP_AJ_P0030475 Camkk1 protein_coding protein_coding MGP_AJ_T0030476.1 MGP_AJ_G0018617.1 mouse_genomes_project 11 70928033 70941885 + MGP_AJ_P0030476 Camkk1 protein_coding protein_coding MGP_AJ_T0028707.1 MGP_AJ_G0018181.1 mouse_genomes_project 11 46210864 46227128 - MGP_AJ_P0028707 9930111J21Rik1 protein_coding protein_coding MGP_AJ_T0003139.1 MGP_AJ_G0002911.1 mouse_genomes_project 11 30804628 30811343 + Gm12120 antisense antisense MGP_AJ_T0031644.1 MGP_AJ_G0018921.1 mouse_genomes_project 11 92516345 92550377 - MGP_AJ_P0031644 Luc7l3 protein_coding protein_coding MGP_AJ_T0031645.1 MGP_AJ_G0018921.1 mouse_genomes_project 11 92519567 92550407 - MGP_AJ_P0031645 Luc7l3 protein_coding protein_coding MGP_AJ_T0031646.1 MGP_AJ_G0018921.1 mouse_genomes_project 11 92519567 92525549 - MGP_AJ_P0031646 Luc7l3 protein_coding protein_coding MGP_AJ_T0031647.1 MGP_AJ_G0018921.1 mouse_genomes_project 11 92519645 92550407 - MGP_AJ_P0031647 Luc7l3 protein_coding protein_coding MGP_AJ_T0031648.1 MGP_AJ_G0018921.1 mouse_genomes_project 11 92519645 92550407 - MGP_AJ_P0031648 Luc7l3 protein_coding protein_coding MGP_AJ_T0031649.1 MGP_AJ_G0018921.1 mouse_genomes_project 11 92519835 92521729 - MGP_AJ_P0031649 Luc7l3 protein_coding nonsense_mediated_decay MGP_AJ_T0031650.1 MGP_AJ_G0018921.1 mouse_genomes_project 11 92521279 92550314 - MGP_AJ_P0031650 Luc7l3 protein_coding nonsense_mediated_decay MGP_AJ_T0031651.1 MGP_AJ_G0018921.1 mouse_genomes_project 11 92525488 92526706 - Luc7l3 protein_coding retained_intron MGP_AJ_T0031652.1 MGP_AJ_G0018921.1 mouse_genomes_project 11 92525496 92527537 - Luc7l3 protein_coding processed_transcript MGP_AJ_T0031653.1 MGP_AJ_G0018921.1 mouse_genomes_project 11 92525537 92528859 - Luc7l3 protein_coding retained_intron MGP_AJ_T0032183.1 MGP_AJ_G0019051.1 mouse_genomes_project 11 97509500 97520378 - MGP_AJ_P0032183 Ccr7 protein_coding protein_coding MGP_AJ_T0003312.1 MGP_AJ_G0003054.1 mouse_genomes_project 11 103776308 103780002 - 1700052K11Rik antisense antisense MGP_AJ_T0012734.1 MGP_AJ_G0010829.1 mouse_genomes_project 11 95427559 95427679 - processed_pseudogene processed_pseudogene MGP_AJ_T0029861.1 MGP_AJ_G0018485.1 mouse_genomes_project 11 66861719 66863944 + MGP_AJ_P0029861 Tmem107 protein_coding protein_coding MGP_AJ_T0029862.1 MGP_AJ_G0018485.1 mouse_genomes_project 11 66861724 66864207 + MGP_AJ_P0029862 Tmem107 protein_coding protein_coding MGP_AJ_T0029863.1 MGP_AJ_G0018485.1 mouse_genomes_project 11 66861726 66863737 + Tmem107 protein_coding processed_transcript MGP_AJ_T0029864.1 MGP_AJ_G0018485.1 mouse_genomes_project 11 66861767 66862417 + Tmem107 protein_coding processed_transcript MGP_AJ_T0029865.1 MGP_AJ_G0018485.1 mouse_genomes_project 11 66861786 66864175 + Tmem107 protein_coding processed_transcript MGP_AJ_T0029866.1 MGP_AJ_G0018485.1 mouse_genomes_project 11 66861831 66863938 + Tmem107 protein_coding processed_transcript MGP_AJ_T0029867.1 MGP_AJ_G0018485.1 mouse_genomes_project 11 66861849 66863730 + Tmem107 protein_coding processed_transcript MGP_AJ_T0029868.1 MGP_AJ_G0018485.1 mouse_genomes_project 11 66862215 66863474 + Tmem107 protein_coding processed_transcript MGP_AJ_T0032853.1 MGP_AJ_G0019231.1 mouse_genomes_project 11 101917111 101966741 - MGP_AJ_P0032853 Plekhm1 protein_coding protein_coding MGP_AJ_T0032854.1 MGP_AJ_G0019231.1 mouse_genomes_project 11 101919441 101947499 - MGP_AJ_P0032854 Plekhm1 protein_coding nonsense_mediated_decay MGP_AJ_T0029299.1 MGP_AJ_G0018364.1 mouse_genomes_project 11 56870932 56897423 + MGP_AJ_P0029299 Wnt9a protein_coding protein_coding MGP_AJ_T0029300.1 MGP_AJ_G0018364.1 mouse_genomes_project 11 56870934 56897423 + MGP_AJ_P0029300 Wnt9a protein_coding protein_coding MGP_AJ_T0099318.1 MGP_AJ_G0037284.1 mouse_genomes_project 11 21488027 21488100 - Gm22787 snRNA snRNA MGP_AJ_T0029199.1 MGP_AJ_G0018315.1 mouse_genomes_project 11 55668830 55694896 + MGP_AJ_P0029199 Igtp protein_coding protein_coding MGP_AJ_T0029200.1 MGP_AJ_G0018315.1 mouse_genomes_project 11 55668860 55694870 + MGP_AJ_P0029200 Igtp protein_coding protein_coding MGP_AJ_T0029201.1 MGP_AJ_G0018315.1 mouse_genomes_project 11 55668862 55694880 + MGP_AJ_P0029201 Igtp protein_coding protein_coding MGP_AJ_T0030412.1 MGP_AJ_G0018603.1 mouse_genomes_project 11 70193262 70200694 + MGP_AJ_P0030412 Xaf1 protein_coding protein_coding MGP_AJ_T0030413.1 MGP_AJ_G0018603.1 mouse_genomes_project 11 70193263 70208880 + MGP_AJ_P0030413 Xaf1 protein_coding protein_coding MGP_AJ_T0030414.1 MGP_AJ_G0018603.1 mouse_genomes_project 11 70193272 70207227 + MGP_AJ_P0030414 Xaf1 protein_coding protein_coding MGP_AJ_T0030415.1 MGP_AJ_G0018603.1 mouse_genomes_project 11 70193296 70200382 + MGP_AJ_P0030415 Xaf1 protein_coding nonsense_mediated_decay MGP_AJ_T0030416.1 MGP_AJ_G0018603.1 mouse_genomes_project 11 70193298 70200401 + Xaf1 protein_coding retained_intron MGP_AJ_T0033189.1 MGP_AJ_G0019306.1 mouse_genomes_project 11 108343369 108396282 - MGP_AJ_P0033189 Fam20a protein_coding nonsense_mediated_decay MGP_AJ_T0033190.1 MGP_AJ_G0019306.1 mouse_genomes_project 11 108346546 108396259 - MGP_AJ_P0033190 Fam20a protein_coding protein_coding MGP_AJ_T0033191.1 MGP_AJ_G0019306.1 mouse_genomes_project 11 108347094 108350044 - Fam20a protein_coding retained_intron MGP_AJ_T0033192.1 MGP_AJ_G0019306.1 mouse_genomes_project 11 108348260 108356598 - Fam20a protein_coding retained_intron MGP_AJ_T0017228.1 MGP_AJ_G0015166.1 mouse_genomes_project 11 82987647 82989338 + 4930502E09Rik processed_transcript processed_transcript MGP_AJ_T0027768.1 MGP_AJ_G0017952.1 mouse_genomes_project 11 1162818 1167003 + MGP_AJ_P0027768 Gatsl3 protein_coding protein_coding MGP_AJ_T0030771.1 MGP_AJ_G0018703.1 mouse_genomes_project 11 74624330 74643012 + MGP_AJ_P0030771 Tusc5 protein_coding protein_coding MGP_AJ_T0029318.1 MGP_AJ_G0018370.1 mouse_genomes_project 11 57111854 57137395 + MGP_AJ_P0029318 Nlrp3 protein_coding protein_coding MGP_AJ_T0029319.1 MGP_AJ_G0018370.1 mouse_genomes_project 11 57112972 57137396 + MGP_AJ_P0029319 Nlrp3 protein_coding protein_coding MGP_AJ_T0029320.1 MGP_AJ_G0018370.1 mouse_genomes_project 11 57113042 57118349 + MGP_AJ_P0029320 Nlrp3 protein_coding protein_coding MGP_AJ_T0032076.1 MGP_AJ_G0019027.1 mouse_genomes_project 11 96759094 96784556 + MGP_AJ_P0032076 Erbb2 protein_coding protein_coding MGP_AJ_T0032077.1 MGP_AJ_G0019027.1 mouse_genomes_project 11 96759117 96783917 + Erbb2 protein_coding processed_transcript MGP_AJ_T0032078.1 MGP_AJ_G0019027.1 mouse_genomes_project 11 96773729 96774222 + Erbb2 protein_coding processed_transcript MGP_AJ_T0012497.1 MGP_AJ_G0010592.1 mouse_genomes_project 11 13998155 13998310 - processed_pseudogene processed_pseudogene MGP_AJ_T0099367.1 MGP_AJ_G0037333.1 mouse_genomes_project 11 96769939 96770030 - Gm25048 snRNA snRNA MGP_AJ_T0028871.1 MGP_AJ_G0018225.1 mouse_genomes_project 11 48205907 48215713 - MGP_AJ_P0028871 Zfp354b protein_coding protein_coding MGP_AJ_T0028872.1 MGP_AJ_G0018225.1 mouse_genomes_project 11 48212648 48214729 - Zfp354b protein_coding processed_transcript MGP_AJ_T0032880.1 MGP_AJ_G0019241.1 mouse_genomes_project 11 102761275 102763497 + MGP_AJ_P0032880 Sppl2c protein_coding protein_coding MGP_AJ_T0032881.1 MGP_AJ_G0019241.1 mouse_genomes_project 11 102761275 102766037 + MGP_AJ_P0032881 Sppl2c protein_coding protein_coding MGP_AJ_T0011314.1 MGP_AJ_G0009436.1 mouse_genomes_project 11 100986724 100986975 - Gm23563 misc_RNA misc_RNA MGP_AJ_T0029247.1 MGP_AJ_G0018341.1 mouse_genomes_project 11 56245083 56253596 + MGP_AJ_P0029247 protein_coding protein_coding MGP_AJ_T0033442.1 MGP_AJ_G0019365.1 mouse_genomes_project 11 114424874 114429892 - Mif4gd protein_coding processed_transcript MGP_AJ_T0033443.1 MGP_AJ_G0019365.1 mouse_genomes_project 11 114424874 114429932 - Mif4gd protein_coding processed_transcript MGP_AJ_T0033444.1 MGP_AJ_G0019365.1 mouse_genomes_project 11 114424874 114429974 - MGP_AJ_P0033444 Mif4gd protein_coding protein_coding MGP_AJ_T0033445.1 MGP_AJ_G0019365.1 mouse_genomes_project 11 114424874 114429496 - MGP_AJ_P0033445 Mif4gd protein_coding protein_coding MGP_AJ_T0033446.1 MGP_AJ_G0019365.1 mouse_genomes_project 11 114425105 114429883 - MGP_AJ_P0033446 Mif4gd protein_coding protein_coding MGP_AJ_T0033447.1 MGP_AJ_G0019365.1 mouse_genomes_project 11 114425163 114429835 - Mif4gd protein_coding processed_transcript MGP_AJ_T0033448.1 MGP_AJ_G0019365.1 mouse_genomes_project 11 114425373 114429904 - Mif4gd protein_coding processed_transcript MGP_AJ_T0033449.1 MGP_AJ_G0019365.1 mouse_genomes_project 11 114425468 114429119 - MGP_AJ_P0033449 Mif4gd protein_coding protein_coding MGP_AJ_T0033450.1 MGP_AJ_G0019365.1 mouse_genomes_project 11 114426133 114429909 - Mif4gd protein_coding processed_transcript MGP_AJ_T0033451.1 MGP_AJ_G0019365.1 mouse_genomes_project 11 114429094 114429925 - Mif4gd protein_coding processed_transcript MGP_AJ_T0003121.1 MGP_AJ_G0002898.1 mouse_genomes_project 11 8846758 8864209 + 1700042O10Rik antisense antisense MGP_AJ_T0031128.1 MGP_AJ_G0018783.1 mouse_genomes_project 11 78848452 78860305 + MGP_AJ_P0031128 Tmem98 protein_coding protein_coding MGP_AJ_T0000843.1 MGP_AJ_G0000778.1 mouse_genomes_project 11 15998537 15999393 - TEC TEC MGP_AJ_T0033612.1 MGP_AJ_G0019394.1 mouse_genomes_project 11 115179265 115254049 - MGP_AJ_P0033612 Rnf157 protein_coding protein_coding MGP_AJ_T0033613.1 MGP_AJ_G0019394.1 mouse_genomes_project 11 115179265 115203061 - MGP_AJ_P0033613 Rnf157 protein_coding protein_coding MGP_AJ_T0033614.1 MGP_AJ_G0019394.1 mouse_genomes_project 11 115179265 115254049 - MGP_AJ_P0033614 Rnf157 protein_coding protein_coding MGP_AJ_T0033615.1 MGP_AJ_G0019394.1 mouse_genomes_project 11 115181258 115191314 - Rnf157 protein_coding processed_transcript MGP_AJ_T0033616.1 MGP_AJ_G0019394.1 mouse_genomes_project 11 115181325 115191788 - MGP_AJ_P0033616 Rnf157 protein_coding protein_coding MGP_AJ_T0033617.1 MGP_AJ_G0019394.1 mouse_genomes_project 11 115196513 115203479 - Rnf157 protein_coding processed_transcript MGP_AJ_T0033618.1 MGP_AJ_G0019394.1 mouse_genomes_project 11 115197829 115199331 - Rnf157 protein_coding processed_transcript MGP_AJ_T0033619.1 MGP_AJ_G0019394.1 mouse_genomes_project 11 115201331 115203287 - Rnf157 protein_coding processed_transcript MGP_AJ_T0033620.1 MGP_AJ_G0019394.1 mouse_genomes_project 11 115203231 115203987 - Rnf157 protein_coding processed_transcript MGP_AJ_T0033621.1 MGP_AJ_G0019394.1 mouse_genomes_project 11 115203863 115233925 - Rnf157 protein_coding processed_transcript MGP_AJ_T0033622.1 MGP_AJ_G0019394.1 mouse_genomes_project 11 115243753 115254077 - Rnf157 protein_coding processed_transcript MGP_AJ_T0033714.1 MGP_AJ_G0019412.1 mouse_genomes_project 11 115749384 115818240 + MGP_AJ_P0033714 Mgat5b protein_coding protein_coding MGP_AJ_T0033715.1 MGP_AJ_G0019412.1 mouse_genomes_project 11 115778228 115805368 + Mgat5b protein_coding processed_transcript MGP_AJ_T0033716.1 MGP_AJ_G0019412.1 mouse_genomes_project 11 115797671 115809531 + MGP_AJ_P0033716 Mgat5b protein_coding protein_coding MGP_AJ_T0033717.1 MGP_AJ_G0019412.1 mouse_genomes_project 11 115804133 115818232 + Mgat5b protein_coding retained_intron MGP_AJ_T0032201.1 MGP_AJ_G0019060.1 mouse_genomes_project 11 97783244 97789814 - MGP_AJ_P0032201 Krt12 protein_coding protein_coding MGP_AJ_T0028382.1 MGP_AJ_G0018091.1 mouse_genomes_project 11 27919654 28122649 + MGP_AJ_P0028382 Asb3 protein_coding protein_coding MGP_AJ_T0028388.1 MGP_AJ_G0018091.1 mouse_genomes_project 11 27989654 28124019 + MGP_AJ_P0028388 Asb3 protein_coding protein_coding MGP_AJ_T0028389.1 MGP_AJ_G0018091.1 mouse_genomes_project 11 27989665 28124019 + MGP_AJ_P0028389 Asb3 protein_coding nonsense_mediated_decay MGP_AJ_T0028390.1 MGP_AJ_G0018091.1 mouse_genomes_project 11 27989678 28107402 + MGP_AJ_P0028390 Asb3 protein_coding protein_coding MGP_AJ_T0028391.1 MGP_AJ_G0018091.1 mouse_genomes_project 11 27989707 28061265 + Asb3 protein_coding retained_intron MGP_AJ_T0028394.1 MGP_AJ_G0018091.1 mouse_genomes_project 11 28080714 28084165 + Asb3 protein_coding retained_intron MGP_AJ_T0029348.1 MGP_AJ_G0018377.1 mouse_genomes_project 11 57416579 57453731 + Nt5m protein_coding processed_transcript MGP_AJ_T0029349.1 MGP_AJ_G0018377.1 mouse_genomes_project 11 57416579 57458157 + Nt5m protein_coding processed_transcript MGP_AJ_T0029350.1 MGP_AJ_G0018377.1 mouse_genomes_project 11 57425808 57453731 + MGP_AJ_P0029350 Nt5m protein_coding protein_coding MGP_AJ_T0029351.1 MGP_AJ_G0018377.1 mouse_genomes_project 11 57425839 57453731 + Nt5m protein_coding processed_transcript MGP_AJ_T0003311.1 MGP_AJ_G0003053.1 mouse_genomes_project 11 103136582 103137571 - Gm11665 antisense antisense MGP_AJ_T0031927.1 MGP_AJ_G0018994.1 mouse_genomes_project 11 95474283 95475996 - Kpnb1 protein_coding retained_intron MGP_AJ_T0031928.1 MGP_AJ_G0018994.1 mouse_genomes_project 11 95474427 95499318 - MGP_AJ_P0031928 Kpnb1 protein_coding protein_coding MGP_AJ_T0031929.1 MGP_AJ_G0018994.1 mouse_genomes_project 11 95475994 95477174 - Kpnb1 protein_coding retained_intron MGP_AJ_T0027862.1 MGP_AJ_G0017971.1 mouse_genomes_project 11 2066223 2091999 - MGP_AJ_P0027862 Emid1 protein_coding protein_coding MGP_AJ_T0027863.1 MGP_AJ_G0017971.1 mouse_genomes_project 11 2066223 2113312 - MGP_AJ_P0027863 Emid1 protein_coding protein_coding MGP_AJ_T0027864.1 MGP_AJ_G0017971.1 mouse_genomes_project 11 2066224 2113295 - MGP_AJ_P0027864 Emid1 protein_coding protein_coding MGP_AJ_T0027865.1 MGP_AJ_G0017971.1 mouse_genomes_project 11 2066229 2090874 - MGP_AJ_P0027865 Emid1 protein_coding protein_coding MGP_AJ_T0027866.1 MGP_AJ_G0017971.1 mouse_genomes_project 11 2066603 2090463 - Emid1 protein_coding retained_intron MGP_AJ_T0027867.1 MGP_AJ_G0017971.1 mouse_genomes_project 11 2066865 2090284 - MGP_AJ_P0027867 Emid1 protein_coding nonsense_mediated_decay MGP_AJ_T0027868.1 MGP_AJ_G0017971.1 mouse_genomes_project 11 2093195 2113292 - MGP_AJ_P0027868 Emid1 protein_coding nonsense_mediated_decay MGP_AJ_T0027869.1 MGP_AJ_G0017971.1 mouse_genomes_project 11 2096627 2111339 - Emid1 protein_coding processed_transcript MGP_AJ_T0003157.1 MGP_AJ_G0002928.1 mouse_genomes_project 11 49342101 49343160 + Gm12204 antisense antisense MGP_AJ_T0099352.1 MGP_AJ_G0037318.1 mouse_genomes_project 11 81631212 81631319 + Gm23247 snRNA snRNA MGP_AJ_T0031342.1 MGP_AJ_G0018846.1 mouse_genomes_project 11 83334516 83346874 + MGP_AJ_P0031342 1700125H20Rik protein_coding protein_coding MGP_AJ_T0031343.1 MGP_AJ_G0018846.1 mouse_genomes_project 11 83335208 83346874 + MGP_AJ_P0031343 1700125H20Rik protein_coding protein_coding MGP_AJ_T0009685.1 MGP_AJ_G0007807.1 mouse_genomes_project 11 56496491 56496629 - Gm44313 miRNA miRNA MGP_AJ_T0030499.1 MGP_AJ_G0018626.1 mouse_genomes_project 11 71144264 71173398 + MGP_AJ_P0030499 Trpv1 protein_coding protein_coding MGP_AJ_T0030500.1 MGP_AJ_G0018626.1 mouse_genomes_project 11 71148233 71172666 + MGP_AJ_P0030500 Trpv1 protein_coding protein_coding MGP_AJ_T0030501.1 MGP_AJ_G0018626.1 mouse_genomes_project 11 71148233 71172666 + MGP_AJ_P0030501 Trpv1 protein_coding unknown_likely_coding MGP_AJ_T0030502.1 MGP_AJ_G0018626.1 mouse_genomes_project 11 71150006 71173401 + MGP_AJ_P0030502 Trpv1 protein_coding protein_coding MGP_AJ_T0030503.1 MGP_AJ_G0018626.1 mouse_genomes_project 11 71150270 71164809 + MGP_AJ_P0030503 Trpv1 protein_coding protein_coding MGP_AJ_T0030504.1 MGP_AJ_G0018626.1 mouse_genomes_project 11 71162284 71164209 + Trpv1 protein_coding processed_transcript MGP_AJ_T0028640.1 MGP_AJ_G0018159.1 mouse_genomes_project 11 43147423 43181675 + MGP_AJ_P0028640 Sox30 protein_coding protein_coding MGP_AJ_T0030241.1 MGP_AJ_G0018571.1 mouse_genomes_project 11 68405251 68457495 + MGP_AJ_P0030241 Mink1 protein_coding protein_coding MGP_AJ_T0030242.1 MGP_AJ_G0018571.1 mouse_genomes_project 11 68405255 68456158 + MGP_AJ_P0030242 Mink1 protein_coding protein_coding MGP_AJ_T0030243.1 MGP_AJ_G0018571.1 mouse_genomes_project 11 68405260 68456157 + MGP_AJ_P0030243 Mink1 protein_coding protein_coding MGP_AJ_T0030244.1 MGP_AJ_G0018571.1 mouse_genomes_project 11 68405268 68457491 + MGP_AJ_P0030244 Mink1 protein_coding protein_coding MGP_AJ_T0030245.1 MGP_AJ_G0018571.1 mouse_genomes_project 11 68405387 68457496 + MGP_AJ_P0030245 Mink1 protein_coding protein_coding MGP_AJ_T0030246.1 MGP_AJ_G0018571.1 mouse_genomes_project 11 68405440 68456046 + MGP_AJ_P0030246 Mink1 protein_coding protein_coding MGP_AJ_T0030247.1 MGP_AJ_G0018571.1 mouse_genomes_project 11 68441239 68447285 + Mink1 protein_coding processed_transcript MGP_AJ_T0030248.1 MGP_AJ_G0018571.1 mouse_genomes_project 11 68446453 68449678 + MGP_AJ_P0030248 Mink1 protein_coding protein_coding MGP_AJ_T0030249.1 MGP_AJ_G0018571.1 mouse_genomes_project 11 68446476 68449333 + MGP_AJ_P0030249 Mink1 protein_coding nonsense_mediated_decay MGP_AJ_T0030250.1 MGP_AJ_G0018571.1 mouse_genomes_project 11 68448954 68450027 + Mink1 protein_coding retained_intron MGP_AJ_T0030251.1 MGP_AJ_G0018571.1 mouse_genomes_project 11 68450065 68451082 + Mink1 protein_coding retained_intron MGP_AJ_T0030252.1 MGP_AJ_G0018571.1 mouse_genomes_project 11 68451991 68453043 + Mink1 protein_coding retained_intron MGP_AJ_T0030253.1 MGP_AJ_G0018571.1 mouse_genomes_project 11 68452384 68453313 + Mink1 protein_coding retained_intron MGP_AJ_T0000846.1 MGP_AJ_G0000781.1 mouse_genomes_project 11 42372991 42373294 - TEC TEC MGP_AJ_T0009719.1 MGP_AJ_G0007841.1 mouse_genomes_project 11 76029548 76029620 - Mir451b miRNA miRNA MGP_AJ_T0003323.1 MGP_AJ_G0003063.1 mouse_genomes_project 11 105979996 105986751 + Gm11716 antisense antisense MGP_AJ_T0009747.1 MGP_AJ_G0007869.1 mouse_genomes_project 11 98928785 98928855 - Mir7116 miRNA miRNA MGP_AJ_T0017255.1 MGP_AJ_G0015183.1 mouse_genomes_project 11 98849284 98850030 + Gm12348 processed_transcript processed_transcript MGP_AJ_T0003140.1 MGP_AJ_G0002912.1 mouse_genomes_project 11 31407985 31416392 + 4930403D09Rik antisense antisense MGP_AJ_T0029954.1 MGP_AJ_G0018508.1 mouse_genomes_project 11 67428505 67432285 - MGP_AJ_P0029954 Shbg protein_coding protein_coding MGP_AJ_T0029955.1 MGP_AJ_G0018508.1 mouse_genomes_project 11 67430020 67431323 - Shbg protein_coding processed_transcript MGP_AJ_T0034189.1 MGP_AJ_G0019506.1 mouse_genomes_project 11 120069388 120071565 + MGP_AJ_P0034189 Tex19.1 protein_coding protein_coding MGP_AJ_T0034190.1 MGP_AJ_G0019506.1 mouse_genomes_project 11 120069402 120070113 + MGP_AJ_P0034190 Tex19.1 protein_coding protein_coding MGP_AJ_T0033316.1 MGP_AJ_G0019337.1 mouse_genomes_project 11 113818586 113824484 - MGP_AJ_P0033316 protein_coding protein_coding MGP_AJ_T0032917.1 MGP_AJ_G0019248.1 mouse_genomes_project 11 103502530 103695682 + MGP_AJ_P0032917 Efcab3 protein_coding unknown_likely_coding MGP_AJ_T0032918.1 MGP_AJ_G0019248.1 mouse_genomes_project 11 103639437 103667280 + MGP_AJ_P0032918 Efcab3 protein_coding protein_coding MGP_AJ_T0032919.1 MGP_AJ_G0019248.1 mouse_genomes_project 11 103642689 103684747 + MGP_AJ_P0032919 Efcab3 protein_coding protein_coding MGP_AJ_T0032920.1 MGP_AJ_G0019248.1 mouse_genomes_project 11 103670413 103695825 + MGP_AJ_P0032920 Efcab3 protein_coding protein_coding MGP_AJ_T0032921.1 MGP_AJ_G0019248.1 mouse_genomes_project 11 103690947 103695823 + Efcab3 protein_coding processed_transcript MGP_AJ_T0030982.1 MGP_AJ_G0018747.1 mouse_genomes_project 11 76443029 76468552 - MGP_AJ_P0030982 Sarm1 protein_coding protein_coding MGP_AJ_T0030983.1 MGP_AJ_G0018747.1 mouse_genomes_project 11 76443912 76454860 - Sarm1 protein_coding retained_intron MGP_AJ_T0030984.1 MGP_AJ_G0018747.1 mouse_genomes_project 11 76443990 76468842 - MGP_AJ_P0030984 Sarm1 protein_coding protein_coding MGP_AJ_T0030985.1 MGP_AJ_G0018747.1 mouse_genomes_project 11 76453895 76458355 - Sarm1 protein_coding retained_intron MGP_AJ_T0030986.1 MGP_AJ_G0018747.1 mouse_genomes_project 11 76462014 76468774 - Sarm1 protein_coding processed_transcript MGP_AJ_T0031904.1 MGP_AJ_G0018987.1 mouse_genomes_project 11 95321332 95333575 + MGP_AJ_P0031904 Sp6 protein_coding protein_coding MGP_AJ_T0031905.1 MGP_AJ_G0018987.1 mouse_genomes_project 11 95327739 95333572 + MGP_AJ_P0031905 Sp6 protein_coding protein_coding MGP_AJ_T0028325.1 MGP_AJ_G0018079.1 mouse_genomes_project 11 26505077 26508345 - MGP_AJ_P0028325 Prorsd1 protein_coding protein_coding MGP_AJ_T0028326.1 MGP_AJ_G0018079.1 mouse_genomes_project 11 26506195 26508347 - MGP_AJ_P0028326 Prorsd1 protein_coding protein_coding MGP_AJ_T0099381.1 MGP_AJ_G0037347.1 mouse_genomes_project 11 105396664 105396771 - Gm25889 snRNA snRNA MGP_AJ_T0006242.1 MGP_AJ_G0005213.1 mouse_genomes_project 11 51638586 51673880 - 4933405E24Rik lincRNA lincRNA MGP_AJ_T0101713.1 MGP_AJ_G0039659.1 mouse_genomes_project 11 116271489 116272568 - transcribed_processed_pseudogene processed_transcript MGP_AJ_T0101714.1 MGP_AJ_G0039659.1 mouse_genomes_project 11 116271548 116271978 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0033238.1 MGP_AJ_G0019318.1 mouse_genomes_project 11 112384634 112393890 + MGP_AJ_P0033238 Sstr2 protein_coding protein_coding MGP_AJ_T0033239.1 MGP_AJ_G0019318.1 mouse_genomes_project 11 112384768 112393760 + MGP_AJ_P0033239 Sstr2 protein_coding protein_coding MGP_AJ_T0033240.1 MGP_AJ_G0019318.1 mouse_genomes_project 11 112392121 112393501 + MGP_AJ_P0033240 Sstr2 protein_coding protein_coding MGP_AJ_T0012751.1 MGP_AJ_G0010846.1 mouse_genomes_project 11 101193538 101194344 - processed_pseudogene processed_pseudogene MGP_AJ_T0030486.1 MGP_AJ_G0018622.1 mouse_genomes_project 11 71082042 71083561 - MGP_AJ_P0030486 Emc6 protein_coding protein_coding MGP_AJ_T0030487.1 MGP_AJ_G0018622.1 mouse_genomes_project 11 71082859 71083526 - MGP_AJ_P0030487 Emc6 protein_coding protein_coding MGP_AJ_T0028818.1 MGP_AJ_G0018215.1 mouse_genomes_project 11 47568167 47599664 - MGP_AJ_P0028818 Canx protein_coding protein_coding MGP_AJ_T0028819.1 MGP_AJ_G0018215.1 mouse_genomes_project 11 47568673 47599664 - MGP_AJ_P0028819 Canx protein_coding protein_coding MGP_AJ_T0028820.1 MGP_AJ_G0018215.1 mouse_genomes_project 11 47570405 47573585 - Canx protein_coding processed_transcript MGP_AJ_T0028821.1 MGP_AJ_G0018215.1 mouse_genomes_project 11 47571570 47572526 - Canx protein_coding processed_transcript MGP_AJ_T0028822.1 MGP_AJ_G0018215.1 mouse_genomes_project 11 47573044 47575197 - Canx protein_coding processed_transcript MGP_AJ_T0012578.1 MGP_AJ_G0010673.1 mouse_genomes_project 11 40612328 40612618 - processed_pseudogene processed_pseudogene MGP_AJ_T0012789.1 MGP_AJ_G0010884.1 mouse_genomes_project 11 117088017 117088485 - processed_pseudogene processed_pseudogene MGP_AJ_T0028383.1 MGP_AJ_G0018092.1 mouse_genomes_project 11 27966219 27989493 - MGP_AJ_P0028383 Erlec1 protein_coding protein_coding MGP_AJ_T0028384.1 MGP_AJ_G0018092.1 mouse_genomes_project 11 27967196 27983795 - MGP_AJ_P0028384 Erlec1 protein_coding nonsense_mediated_decay MGP_AJ_T0028385.1 MGP_AJ_G0018092.1 mouse_genomes_project 11 27970370 27983411 - MGP_AJ_P0028385 Erlec1 protein_coding nonsense_mediated_decay MGP_AJ_T0028386.1 MGP_AJ_G0018092.1 mouse_genomes_project 11 27978032 27983528 - Erlec1 protein_coding retained_intron MGP_AJ_T0028387.1 MGP_AJ_G0018092.1 mouse_genomes_project 11 27988353 27989595 - Erlec1 protein_coding processed_transcript MGP_AJ_T0031054.1 MGP_AJ_G0018768.1 mouse_genomes_project 11 77597382 77707055 + MGP_AJ_P0031054 Rab11fip4 protein_coding protein_coding MGP_AJ_T0031055.1 MGP_AJ_G0018768.1 mouse_genomes_project 11 77668727 77691751 + MGP_AJ_P0031055 Rab11fip4 protein_coding protein_coding MGP_AJ_T0028516.1 MGP_AJ_G0018130.1 mouse_genomes_project 11 32934977 32961126 - MGP_AJ_P0028516 Rars protein_coding protein_coding MGP_AJ_T0028517.1 MGP_AJ_G0018130.1 mouse_genomes_project 11 32942264 32946706 - Rars protein_coding processed_transcript MGP_AJ_T0028518.1 MGP_AJ_G0018130.1 mouse_genomes_project 11 32944024 32948100 - Rars protein_coding retained_intron MGP_AJ_T0028519.1 MGP_AJ_G0018130.1 mouse_genomes_project 11 32947733 32951728 - Rars protein_coding retained_intron MGP_AJ_T0028520.1 MGP_AJ_G0018130.1 mouse_genomes_project 11 32953089 32961081 - Rars protein_coding processed_transcript MGP_AJ_T0012624.1 MGP_AJ_G0010719.1 mouse_genomes_project 11 55352596 55352887 + processed_pseudogene processed_pseudogene MGP_AJ_T0030153.1 MGP_AJ_G0018551.1 mouse_genomes_project 11 67992606 67998085 + MGP_AJ_P0030153 Clec10a protein_coding protein_coding MGP_AJ_T0030154.1 MGP_AJ_G0018551.1 mouse_genomes_project 11 67992638 67998084 + MGP_AJ_P0030154 Clec10a protein_coding protein_coding MGP_AJ_T0030155.1 MGP_AJ_G0018551.1 mouse_genomes_project 11 67992650 67998084 + MGP_AJ_P0030155 Clec10a protein_coding protein_coding MGP_AJ_T0030156.1 MGP_AJ_G0018551.1 mouse_genomes_project 11 67992714 67994672 + MGP_AJ_P0030156 Clec10a protein_coding protein_coding MGP_AJ_T0030157.1 MGP_AJ_G0018551.1 mouse_genomes_project 11 67993670 67993980 + MGP_AJ_P0030157 Clec10a protein_coding protein_coding MGP_AJ_T0030158.1 MGP_AJ_G0018551.1 mouse_genomes_project 11 67996986 67998062 + MGP_AJ_P0030158 Clec10a protein_coding protein_coding MGP_AJ_T0012653.1 MGP_AJ_G0010748.1 mouse_genomes_project 11 65805295 65805974 - processed_pseudogene processed_pseudogene MGP_AJ_T0028405.1 MGP_AJ_G0018097.1 mouse_genomes_project 11 29008116 29022143 + MGP_AJ_P0028405 4930524B15Rik protein_coding protein_coding MGP_AJ_T0006347.1 MGP_AJ_G0005291.1 mouse_genomes_project 11 110528326 110533083 - Gm11674 lincRNA lincRNA MGP_AJ_T0027870.1 MGP_AJ_G0017972.1 mouse_genomes_project 11 2153007 2222667 - MGP_AJ_P0027870 Kremen1 protein_coding protein_coding MGP_AJ_T0027871.1 MGP_AJ_G0017972.1 mouse_genomes_project 11 2165987 2199567 - MGP_AJ_P0027871 Kremen1 protein_coding protein_coding MGP_AJ_T0100608.1 MGP_AJ_G0038574.1 mouse_genomes_project 11 72814198 72814291 + Snord91a snoRNA snoRNA MGP_AJ_T0012573.1 MGP_AJ_G0010668.1 mouse_genomes_project 11 37758227 37759436 - processed_pseudogene processed_pseudogene MGP_AJ_T0031386.1 MGP_AJ_G0018856.1 mouse_genomes_project 11 84653310 84672294 + MGP_AJ_P0031386 Rnft1 protein_coding protein_coding MGP_AJ_T0031387.1 MGP_AJ_G0018856.1 mouse_genomes_project 11 84653338 84659161 + Rnft1 protein_coding processed_transcript MGP_AJ_T0031388.1 MGP_AJ_G0018856.1 mouse_genomes_project 11 84653383 84654759 + Rnft1 protein_coding processed_transcript MGP_AJ_T0100588.1 MGP_AJ_G0038554.1 mouse_genomes_project 11 45925992 45926073 + Snord96a snoRNA snoRNA MGP_AJ_T0028760.1 MGP_AJ_G0018199.1 mouse_genomes_project 11 46665998 46666934 + MGP_AJ_P0028760 Olfr1387 protein_coding protein_coding MGP_AJ_T0031468.1 MGP_AJ_G0018876.1 mouse_genomes_project 11 85846657 85914827 + Rnf43 protein_coding retained_intron MGP_AJ_T0031469.1 MGP_AJ_G0018876.1 mouse_genomes_project 11 85847022 85903380 + Rnf43 protein_coding processed_transcript MGP_AJ_T0031470.1 MGP_AJ_G0018876.1 mouse_genomes_project 11 85848484 85919433 + MGP_AJ_P0031470 Rnf43 protein_coding protein_coding MGP_AJ_T0031471.1 MGP_AJ_G0018876.1 mouse_genomes_project 11 85848551 85919092 + MGP_AJ_P0031471 Rnf43 protein_coding protein_coding MGP_AJ_T0031472.1 MGP_AJ_G0018876.1 mouse_genomes_project 11 85912318 85915419 + Rnf43 protein_coding retained_intron MGP_AJ_T0031473.1 MGP_AJ_G0018876.1 mouse_genomes_project 11 85914266 85916006 + Rnf43 protein_coding retained_intron MGP_AJ_T0031474.1 MGP_AJ_G0018876.1 mouse_genomes_project 11 85918812 85919361 + Rnf43 protein_coding processed_transcript MGP_AJ_T0033297.1 MGP_AJ_G0019330.1 mouse_genomes_project 11 113577001 113584814 + MGP_AJ_P0033297 Gpr142 protein_coding protein_coding MGP_AJ_T0033298.1 MGP_AJ_G0019330.1 mouse_genomes_project 11 113577001 113584814 + MGP_AJ_P0033298 Gpr142 protein_coding protein_coding MGP_AJ_T0028458.1 MGP_AJ_G0018110.1 mouse_genomes_project 11 29594104 29686990 + MGP_AJ_P0028458 Stk10 protein_coding protein_coding MGP_AJ_T0028459.1 MGP_AJ_G0018110.1 mouse_genomes_project 11 29651340 29661183 + Stk10 protein_coding retained_intron MGP_AJ_T0100578.1 MGP_AJ_G0038544.1 mouse_genomes_project 11 22152657 22152785 - Gm24255 snoRNA snoRNA MGP_AJ_T0017241.1 MGP_AJ_G0015173.1 mouse_genomes_project 11 95210237 95261703 + D030028A08Rik processed_transcript processed_transcript MGP_AJ_T0017242.1 MGP_AJ_G0015173.1 mouse_genomes_project 11 95247417 95273229 + D030028A08Rik processed_transcript processed_transcript MGP_AJ_T0017243.1 MGP_AJ_G0015173.1 mouse_genomes_project 11 95247441 95268269 + D030028A08Rik processed_transcript processed_transcript MGP_AJ_T0017244.1 MGP_AJ_G0015173.1 mouse_genomes_project 11 95247564 95272073 + D030028A08Rik processed_transcript processed_transcript MGP_AJ_T0017285.1 MGP_AJ_G0015195.1 mouse_genomes_project 11 116477356 116479936 + 2900041M22Rik processed_transcript processed_transcript MGP_AJ_T0031846.1 MGP_AJ_G0018976.1 mouse_genomes_project 11 94634999 94638122 + Hoxb2 protein_coding retained_intron MGP_AJ_T0031847.1 MGP_AJ_G0018976.1 mouse_genomes_project 11 94636102 94638477 + MGP_AJ_P0031847 Hoxb2 protein_coding protein_coding MGP_AJ_T0030738.1 MGP_AJ_G0018696.1 mouse_genomes_project 11 74153954 74161474 - MGP_AJ_P0030738 Gemin4 protein_coding protein_coding MGP_AJ_T0030739.1 MGP_AJ_G0018696.1 mouse_genomes_project 11 74160888 74161327 - MGP_AJ_P0030739 Gemin4 protein_coding nonsense_mediated_decay MGP_AJ_T0031015.1 MGP_AJ_G0018756.1 mouse_genomes_project 11 76730728 76731952 - MGP_AJ_P0031015 Fam58b protein_coding protein_coding MGP_AJ_T0012562.1 MGP_AJ_G0010657.1 mouse_genomes_project 11 30255280 30255727 + processed_pseudogene processed_pseudogene MGP_AJ_T0029027.1 MGP_AJ_G0018269.1 mouse_genomes_project 11 51006404 51020588 - Il4 protein_coding processed_transcript MGP_AJ_T0029028.1 MGP_AJ_G0018269.1 mouse_genomes_project 11 51015823 51022033 - MGP_AJ_P0029028 Il4 protein_coding protein_coding MGP_AJ_T0029029.1 MGP_AJ_G0018269.1 mouse_genomes_project 11 51015823 51020702 - MGP_AJ_P0029029 Il4 protein_coding protein_coding MGP_AJ_T0029030.1 MGP_AJ_G0018269.1 mouse_genomes_project 11 51015823 51021716 - MGP_AJ_P0029030 Il4 protein_coding protein_coding MGP_AJ_T0029882.1 MGP_AJ_G0018490.1 mouse_genomes_project 11 66917303 66941122 + MGP_AJ_P0029882 Aloxe3 protein_coding protein_coding MGP_AJ_T0029883.1 MGP_AJ_G0018490.1 mouse_genomes_project 11 66917622 66927553 + Aloxe3 protein_coding retained_intron MGP_AJ_T0029884.1 MGP_AJ_G0018490.1 mouse_genomes_project 11 66917810 66925920 + MGP_AJ_P0029884 Aloxe3 protein_coding nonsense_mediated_decay MGP_AJ_T0029885.1 MGP_AJ_G0018490.1 mouse_genomes_project 11 66925537 66926502 + Aloxe3 protein_coding retained_intron MGP_AJ_T0029886.1 MGP_AJ_G0018490.1 mouse_genomes_project 11 66925712 66934897 + Aloxe3 protein_coding retained_intron MGP_AJ_T0029887.1 MGP_AJ_G0018490.1 mouse_genomes_project 11 66927584 66934975 + Aloxe3 protein_coding retained_intron MGP_AJ_T0012790.1 MGP_AJ_G0010885.1 mouse_genomes_project 11 118551446 118551891 - processed_pseudogene processed_pseudogene MGP_AJ_T0003282.1 MGP_AJ_G0003029.1 mouse_genomes_project 11 96046929 96048953 + Gm11614 antisense antisense MGP_AJ_T0032196.1 MGP_AJ_G0019056.1 mouse_genomes_project 11 97693395 97702766 - Krt26 protein_coding processed_transcript MGP_AJ_T0032197.1 MGP_AJ_G0019056.1 mouse_genomes_project 11 97693459 97702767 - MGP_AJ_P0032197 Krt26 protein_coding protein_coding MGP_AJ_T0100620.1 MGP_AJ_G0038586.1 mouse_genomes_project 11 89009789 89009926 - Gm22762 snoRNA snoRNA MGP_AJ_T0031143.1 MGP_AJ_G0018793.1 mouse_genomes_project 11 80215943 80348066 - Ccl1 protein_coding processed_transcript MGP_AJ_T0031144.1 MGP_AJ_G0018793.1 mouse_genomes_project 11 80215943 80219130 - MGP_AJ_P0031144 Ccl1 protein_coding protein_coding MGP_AJ_T0031145.1 MGP_AJ_G0018793.1 mouse_genomes_project 11 80215945 80219130 - MGP_AJ_P0031145 Ccl1 protein_coding protein_coding MGP_AJ_T0006306.1 MGP_AJ_G0005262.1 mouse_genomes_project 11 86263852 86272091 + Gm15892 lincRNA lincRNA MGP_AJ_T0006307.1 MGP_AJ_G0005262.1 mouse_genomes_project 11 86270976 86271639 + Gm15892 lincRNA lincRNA MGP_AJ_T0006308.1 MGP_AJ_G0005262.1 mouse_genomes_project 11 86271036 86272067 + Gm15892 lincRNA lincRNA MGP_AJ_T0028138.1 MGP_AJ_G0018039.1 mouse_genomes_project 11 17226220 17258991 - MGP_AJ_P0028138 Slc1a4 protein_coding protein_coding MGP_AJ_T0031047.1 MGP_AJ_G0018767.1 mouse_genomes_project 11 77531943 77535972 - MGP_AJ_P0031047 Evi2a protein_coding protein_coding MGP_AJ_T0031048.1 MGP_AJ_G0018767.1 mouse_genomes_project 11 77531951 77535993 - MGP_AJ_P0031048 Evi2a protein_coding protein_coding MGP_AJ_T0031049.1 MGP_AJ_G0018767.1 mouse_genomes_project 11 77532340 77533159 - MGP_AJ_P0031049 Evi2a protein_coding protein_coding MGP_AJ_T0031050.1 MGP_AJ_G0018767.1 mouse_genomes_project 11 77533068 77533530 - MGP_AJ_P0031050 Evi2a protein_coding protein_coding MGP_AJ_T0031051.1 MGP_AJ_G0018767.1 mouse_genomes_project 11 77533451 77535993 - Evi2a protein_coding processed_transcript MGP_AJ_T0033313.1 MGP_AJ_G0019335.1 mouse_genomes_project 11 113774476 113783313 - MGP_AJ_P0033313 Cd300ld protein_coding protein_coding MGP_AJ_T0032208.1 MGP_AJ_G0019065.1 mouse_genomes_project 11 97920096 97920828 - MGP_AJ_P0032208 protein_coding protein_coding MGP_AJ_T0006359.1 MGP_AJ_G0005299.1 mouse_genomes_project 11 113020902 113022191 + Gm11691 lincRNA lincRNA MGP_AJ_T0031382.1 MGP_AJ_G0018855.1 mouse_genomes_project 11 84435516 84526018 - MGP_AJ_P0031382 Med13 protein_coding protein_coding MGP_AJ_T0031383.1 MGP_AJ_G0018855.1 mouse_genomes_project 11 84441017 84447070 - Med13 protein_coding processed_transcript MGP_AJ_T0031384.1 MGP_AJ_G0018855.1 mouse_genomes_project 11 84443844 84447462 - Med13 protein_coding retained_intron MGP_AJ_T0031385.1 MGP_AJ_G0018855.1 mouse_genomes_project 11 84499438 84500616 - Med13 protein_coding retained_intron MGP_AJ_T0000845.1 MGP_AJ_G0000780.1 mouse_genomes_project 11 41789686 41796887 - TEC TEC MGP_AJ_T0028181.1 MGP_AJ_G0018049.1 mouse_genomes_project 11 18918773 19213476 - MGP_AJ_P0028181 Ehbp1 protein_coding protein_coding MGP_AJ_T0028182.1 MGP_AJ_G0018049.1 mouse_genomes_project 11 18918773 19212519 - MGP_AJ_P0028182 Ehbp1 protein_coding protein_coding MGP_AJ_T0028183.1 MGP_AJ_G0018049.1 mouse_genomes_project 11 18918775 19213476 - MGP_AJ_P0028183 Ehbp1 protein_coding protein_coding MGP_AJ_T0028184.1 MGP_AJ_G0018049.1 mouse_genomes_project 11 19033891 19096727 - Ehbp1 protein_coding processed_transcript MGP_AJ_T0028185.1 MGP_AJ_G0018049.1 mouse_genomes_project 11 19070258 19212553 - MGP_AJ_P0028185 Ehbp1 protein_coding protein_coding MGP_AJ_T0028186.1 MGP_AJ_G0018049.1 mouse_genomes_project 11 19092757 19095131 - Ehbp1 protein_coding processed_transcript MGP_AJ_T0028187.1 MGP_AJ_G0018049.1 mouse_genomes_project 11 19156409 19263793 - Ehbp1 protein_coding processed_transcript MGP_AJ_T0009742.1 MGP_AJ_G0007864.1 mouse_genomes_project 11 96275302 96275372 - Gm22461 miRNA miRNA MGP_AJ_T0030035.1 MGP_AJ_G0018529.1 mouse_genomes_project 11 67666821 67671482 + MGP_AJ_P0030035 Plscr3 protein_coding protein_coding MGP_AJ_T0030036.1 MGP_AJ_G0018529.1 mouse_genomes_project 11 67667062 67672504 + MGP_AJ_P0030036 Plscr3 protein_coding protein_coding MGP_AJ_T0030037.1 MGP_AJ_G0018529.1 mouse_genomes_project 11 67667062 67668821 + MGP_AJ_P0030037 Plscr3 protein_coding protein_coding MGP_AJ_T0030038.1 MGP_AJ_G0018529.1 mouse_genomes_project 11 67667121 67671489 + MGP_AJ_P0030038 Plscr3 protein_coding protein_coding MGP_AJ_T0102236.1 MGP_AJ_G0039979.1 mouse_genomes_project 11 57174011 57174386 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0006333.1 MGP_AJ_G0005279.1 mouse_genomes_project 11 98512051 98518383 - Gm12347 lincRNA lincRNA MGP_AJ_T0003178.1 MGP_AJ_G0002947.1 mouse_genomes_project 11 56439150 56440910 + Gm12257 antisense antisense MGP_AJ_T0030480.1 MGP_AJ_G0018619.1 mouse_genomes_project 11 70991749 71037145 + MGP_AJ_P0030480 Itgae protein_coding protein_coding MGP_AJ_T0030481.1 MGP_AJ_G0018619.1 mouse_genomes_project 11 70991749 71054064 + MGP_AJ_P0030481 Itgae protein_coding protein_coding MGP_AJ_T0027618.1 MGP_AJ_G0017925.1 mouse_genomes_project 11 110167 152415 + MGP_AJ_P0027618 Eif4enif1 protein_coding protein_coding MGP_AJ_T0027619.1 MGP_AJ_G0017925.1 mouse_genomes_project 11 110440 130209 + Eif4enif1 protein_coding retained_intron MGP_AJ_T0027620.1 MGP_AJ_G0017925.1 mouse_genomes_project 11 110440 152422 + MGP_AJ_P0027620 Eif4enif1 protein_coding protein_coding MGP_AJ_T0027621.1 MGP_AJ_G0017925.1 mouse_genomes_project 11 110466 121203 + Eif4enif1 protein_coding retained_intron MGP_AJ_T0027622.1 MGP_AJ_G0017925.1 mouse_genomes_project 11 110511 128412 + MGP_AJ_P0027622 Eif4enif1 protein_coding protein_coding MGP_AJ_T0027623.1 MGP_AJ_G0017925.1 mouse_genomes_project 11 110772 152419 + MGP_AJ_P0027623 Eif4enif1 protein_coding protein_coding MGP_AJ_T0027624.1 MGP_AJ_G0017925.1 mouse_genomes_project 11 110798 152421 + MGP_AJ_P0027624 Eif4enif1 protein_coding protein_coding MGP_AJ_T0027625.1 MGP_AJ_G0017925.1 mouse_genomes_project 11 111407 152420 + MGP_AJ_P0027625 Eif4enif1 protein_coding protein_coding MGP_AJ_T0027626.1 MGP_AJ_G0017925.1 mouse_genomes_project 11 135637 138055 + Eif4enif1 protein_coding retained_intron MGP_AJ_T0027627.1 MGP_AJ_G0017925.1 mouse_genomes_project 11 135637 138018 + Eif4enif1 protein_coding retained_intron MGP_AJ_T0027628.1 MGP_AJ_G0017925.1 mouse_genomes_project 11 135683 147294 + MGP_AJ_P0027628 Eif4enif1 protein_coding protein_coding MGP_AJ_T0027629.1 MGP_AJ_G0017925.1 mouse_genomes_project 11 142078 148810 + Eif4enif1 protein_coding retained_intron MGP_AJ_T0027630.1 MGP_AJ_G0017925.1 mouse_genomes_project 11 143404 147276 + Eif4enif1 protein_coding retained_intron MGP_AJ_T0030262.1 MGP_AJ_G0018574.1 mouse_genomes_project 11 68493717 68496632 + MGP_AJ_P0030262 Gp1ba protein_coding protein_coding MGP_AJ_T0030263.1 MGP_AJ_G0018574.1 mouse_genomes_project 11 68493739 68496416 + MGP_AJ_P0030263 Gp1ba protein_coding protein_coding MGP_AJ_T0003353.1 MGP_AJ_G0003088.1 mouse_genomes_project 11 117331211 117342100 - Gm11747 antisense antisense MGP_AJ_T0009713.1 MGP_AJ_G0007835.1 mouse_genomes_project 11 73086237 73086303 + Mir132 miRNA miRNA MGP_AJ_T0003165.1 MGP_AJ_G0002936.1 mouse_genomes_project 11 51803161 51816888 - Gm12224 antisense antisense MGP_AJ_T0003166.1 MGP_AJ_G0002936.1 mouse_genomes_project 11 51807526 51816839 - Gm12224 antisense antisense MGP_AJ_T0102267.1 MGP_AJ_G0040010.1 mouse_genomes_project 11 120763237 120767692 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0012663.1 MGP_AJ_G0010758.1 mouse_genomes_project 11 68358489 68358808 - processed_pseudogene processed_pseudogene MGP_AJ_T0028474.1 MGP_AJ_G0018115.1 mouse_genomes_project 11 30289818 30292662 - MGP_AJ_P0028474 Tlx3 protein_coding protein_coding MGP_AJ_T0030258.1 MGP_AJ_G0018573.1 mouse_genomes_project 11 68458860 68459888 + MGP_AJ_P0030258 4930544D05Rik protein_coding protein_coding MGP_AJ_T0030259.1 MGP_AJ_G0018573.1 mouse_genomes_project 11 68458906 68459883 + 4930544D05Rik protein_coding retained_intron MGP_AJ_T0030260.1 MGP_AJ_G0018573.1 mouse_genomes_project 11 68458909 68459903 + MGP_AJ_P0030260 4930544D05Rik protein_coding nonsense_mediated_decay MGP_AJ_T0030261.1 MGP_AJ_G0018573.1 mouse_genomes_project 11 68458922 68459890 + MGP_AJ_P0030261 4930544D05Rik protein_coding protein_coding MGP_AJ_T0012595.1 MGP_AJ_G0010690.1 mouse_genomes_project 11 47045565 47045944 + processed_pseudogene processed_pseudogene MGP_AJ_T0033001.1 MGP_AJ_G0019268.1 mouse_genomes_project 11 104883119 104890026 + MGP_AJ_P0033001 Psmc5 protein_coding nonsense_mediated_decay MGP_AJ_T0033002.1 MGP_AJ_G0019268.1 mouse_genomes_project 11 104883119 104890026 + MGP_AJ_P0033002 Psmc5 protein_coding protein_coding MGP_AJ_T0012560.1 MGP_AJ_G0010655.1 mouse_genomes_project 11 29848062 29849020 - processed_pseudogene processed_pseudogene MGP_AJ_T0003302.1 MGP_AJ_G0003044.1 mouse_genomes_project 11 100481817 100482781 + Gm20659 antisense antisense MGP_AJ_T0006282.1 MGP_AJ_G0005246.1 mouse_genomes_project 11 75435553 75437109 + 2210008F06Rik lincRNA lincRNA MGP_AJ_T0012788.1 MGP_AJ_G0010883.1 mouse_genomes_project 11 116796593 116797017 + processed_pseudogene processed_pseudogene MGP_AJ_T0033781.1 MGP_AJ_G0019428.1 mouse_genomes_project 11 116863448 116901987 + MGP_AJ_P0033781 Pgs1 protein_coding protein_coding MGP_AJ_T0033782.1 MGP_AJ_G0019428.1 mouse_genomes_project 11 116864041 116901987 + MGP_AJ_P0033782 Pgs1 protein_coding nonsense_mediated_decay MGP_AJ_T0033783.1 MGP_AJ_G0019428.1 mouse_genomes_project 11 116877951 116901901 + MGP_AJ_P0033783 Pgs1 protein_coding nonsense_mediated_decay MGP_AJ_T0033784.1 MGP_AJ_G0019428.1 mouse_genomes_project 11 116889514 116901987 + Pgs1 protein_coding retained_intron MGP_AJ_T0028605.1 MGP_AJ_G0018151.1 mouse_genomes_project 11 40938559 41000014 - MGP_AJ_P0028605 Adra1b protein_coding protein_coding MGP_AJ_T0028606.1 MGP_AJ_G0018151.1 mouse_genomes_project 11 40938559 41067551 - MGP_AJ_P0028606 Adra1b protein_coding protein_coding MGP_AJ_T0028607.1 MGP_AJ_G0018151.1 mouse_genomes_project 11 40939976 41067551 - MGP_AJ_P0028607 Adra1b protein_coding protein_coding MGP_AJ_T0033947.1 MGP_AJ_G0019460.1 mouse_genomes_project 11 119007343 119054698 - MGP_AJ_P0033947 Slc38a10 protein_coding protein_coding MGP_AJ_T0033948.1 MGP_AJ_G0019460.1 mouse_genomes_project 11 119007824 119054430 - MGP_AJ_P0033948 Slc38a10 protein_coding protein_coding MGP_AJ_T0033949.1 MGP_AJ_G0019460.1 mouse_genomes_project 11 119009004 119010372 - Slc38a10 protein_coding processed_transcript MGP_AJ_T0033950.1 MGP_AJ_G0019460.1 mouse_genomes_project 11 119009061 119011972 - Slc38a10 protein_coding processed_transcript MGP_AJ_T0033951.1 MGP_AJ_G0019460.1 mouse_genomes_project 11 119009175 119013830 - Slc38a10 protein_coding processed_transcript MGP_AJ_T0033952.1 MGP_AJ_G0019460.1 mouse_genomes_project 11 119009188 119013842 - Slc38a10 protein_coding processed_transcript MGP_AJ_T0033953.1 MGP_AJ_G0019460.1 mouse_genomes_project 11 119009256 119013711 - Slc38a10 protein_coding processed_transcript MGP_AJ_T0033954.1 MGP_AJ_G0019460.1 mouse_genomes_project 11 119011920 119013722 - Slc38a10 protein_coding processed_transcript MGP_AJ_T0033955.1 MGP_AJ_G0019460.1 mouse_genomes_project 11 119014387 119054631 - Slc38a10 protein_coding processed_transcript MGP_AJ_T0033956.1 MGP_AJ_G0019460.1 mouse_genomes_project 11 119022255 119054698 - MGP_AJ_P0033956 Slc38a10 protein_coding protein_coding MGP_AJ_T0033957.1 MGP_AJ_G0019460.1 mouse_genomes_project 11 119027227 119054698 - MGP_AJ_P0033957 Slc38a10 protein_coding protein_coding MGP_AJ_T0033958.1 MGP_AJ_G0019460.1 mouse_genomes_project 11 119036222 119054672 - Slc38a10 protein_coding processed_transcript MGP_AJ_T0033959.1 MGP_AJ_G0019460.1 mouse_genomes_project 11 119038151 119054639 - Slc38a10 protein_coding processed_transcript MGP_AJ_T0033960.1 MGP_AJ_G0019460.1 mouse_genomes_project 11 119041314 119054674 - Slc38a10 protein_coding processed_transcript MGP_AJ_T0033961.1 MGP_AJ_G0019460.1 mouse_genomes_project 11 119042453 119046129 - Slc38a10 protein_coding processed_transcript MGP_AJ_T0031060.1 MGP_AJ_G0018770.1 mouse_genomes_project 11 78009265 78053562 + MGP_AJ_P0031060 Suz12 protein_coding protein_coding MGP_AJ_T0031061.1 MGP_AJ_G0018770.1 mouse_genomes_project 11 78009265 78053563 + MGP_AJ_P0031061 Suz12 protein_coding protein_coding MGP_AJ_T0031062.1 MGP_AJ_G0018770.1 mouse_genomes_project 11 78011745 78018185 + Suz12 protein_coding retained_intron MGP_AJ_T0031063.1 MGP_AJ_G0018770.1 mouse_genomes_project 11 78011776 78032720 + Suz12 protein_coding retained_intron MGP_AJ_T0031064.1 MGP_AJ_G0018770.1 mouse_genomes_project 11 78011950 78032650 + MGP_AJ_P0031064 Suz12 protein_coding nonsense_mediated_decay MGP_AJ_T0031065.1 MGP_AJ_G0018770.1 mouse_genomes_project 11 78044330 78051329 + MGP_AJ_P0031065 Suz12 protein_coding nonsense_mediated_decay MGP_AJ_T0030213.1 MGP_AJ_G0018563.1 mouse_genomes_project 11 68292166 68293975 + MGP_AJ_P0030213 Med11 protein_coding protein_coding MGP_AJ_T0030214.1 MGP_AJ_G0018563.1 mouse_genomes_project 11 68292166 68293488 + MGP_AJ_P0030214 Med11 protein_coding protein_coding MGP_AJ_T0030215.1 MGP_AJ_G0018563.1 mouse_genomes_project 11 68292179 68293812 + Med11 protein_coding retained_intron MGP_AJ_T0100615.1 MGP_AJ_G0038581.1 mouse_genomes_project 11 76141842 76141911 - Snord42b snoRNA snoRNA MGP_AJ_T0030149.1 MGP_AJ_G0018549.1 mouse_genomes_project 11 67922850 67936054 + MGP_AJ_P0030149 Asgr2 protein_coding protein_coding MGP_AJ_T0030150.1 MGP_AJ_G0018549.1 mouse_genomes_project 11 67922937 67935584 + MGP_AJ_P0030150 Asgr2 protein_coding protein_coding MGP_AJ_T0030151.1 MGP_AJ_G0018549.1 mouse_genomes_project 11 67927881 67936029 + Asgr2 protein_coding retained_intron MGP_AJ_T0012702.1 MGP_AJ_G0010797.1 mouse_genomes_project 11 80790535 80790937 - processed_pseudogene processed_pseudogene MGP_AJ_T0009706.1 MGP_AJ_G0007828.1 mouse_genomes_project 11 68277435 68277499 + Mir7115 miRNA miRNA MGP_AJ_T0003237.1 MGP_AJ_G0002995.1 mouse_genomes_project 11 78182389 78201449 - Adap2os antisense antisense MGP_AJ_T0012710.1 MGP_AJ_G0010805.1 mouse_genomes_project 11 85248920 85249391 + processed_pseudogene processed_pseudogene MGP_AJ_T0034213.1 MGP_AJ_G0019513.1 mouse_genomes_project 11 120241157 120268274 - MGP_AJ_P0034213 Wdr45b protein_coding protein_coding MGP_AJ_T0034214.1 MGP_AJ_G0019513.1 mouse_genomes_project 11 120242165 120255122 - Wdr45b protein_coding processed_transcript MGP_AJ_T0034215.1 MGP_AJ_G0019513.1 mouse_genomes_project 11 120245026 120268170 - MGP_AJ_P0034215 Wdr45b protein_coding protein_coding MGP_AJ_T0034216.1 MGP_AJ_G0019513.1 mouse_genomes_project 11 120249317 120268222 - MGP_AJ_P0034216 Wdr45b protein_coding protein_coding MGP_AJ_T0034217.1 MGP_AJ_G0019513.1 mouse_genomes_project 11 120260855 120268230 - Wdr45b protein_coding retained_intron MGP_AJ_T0033859.1 MGP_AJ_G0019445.1 mouse_genomes_project 11 118168092 118187333 + MGP_AJ_P0033859 Gaa protein_coding protein_coding MGP_AJ_T0033860.1 MGP_AJ_G0019445.1 mouse_genomes_project 11 118168231 118187333 + MGP_AJ_P0033860 Gaa protein_coding protein_coding MGP_AJ_T0033861.1 MGP_AJ_G0019445.1 mouse_genomes_project 11 118168233 118173658 + MGP_AJ_P0033861 Gaa protein_coding protein_coding MGP_AJ_T0033862.1 MGP_AJ_G0019445.1 mouse_genomes_project 11 118170721 118175345 + Gaa protein_coding processed_transcript MGP_AJ_T0033863.1 MGP_AJ_G0019445.1 mouse_genomes_project 11 118174773 118178532 + MGP_AJ_P0033863 Gaa protein_coding protein_coding MGP_AJ_T0033864.1 MGP_AJ_G0019445.1 mouse_genomes_project 11 118175061 118175826 + MGP_AJ_P0033864 Gaa protein_coding protein_coding MGP_AJ_T0033865.1 MGP_AJ_G0019445.1 mouse_genomes_project 11 118177919 118183535 + MGP_AJ_P0033865 Gaa protein_coding protein_coding MGP_AJ_T0033866.1 MGP_AJ_G0019445.1 mouse_genomes_project 11 118179081 118179694 + Gaa protein_coding processed_transcript MGP_AJ_T0032551.1 MGP_AJ_G0019177.1 mouse_genomes_project 11 100120920 100125319 + Rdm1 protein_coding processed_transcript MGP_AJ_T0032552.1 MGP_AJ_G0019177.1 mouse_genomes_project 11 100122444 100130601 + MGP_AJ_P0032552 Rdm1 protein_coding protein_coding MGP_AJ_T0032553.1 MGP_AJ_G0019177.1 mouse_genomes_project 11 100122474 100128271 + Rdm1 protein_coding processed_transcript MGP_AJ_T0032554.1 MGP_AJ_G0019177.1 mouse_genomes_project 11 100122892 100130573 + MGP_AJ_P0032554 Rdm1 protein_coding nonsense_mediated_decay MGP_AJ_T0032555.1 MGP_AJ_G0019177.1 mouse_genomes_project 11 100128175 100130461 + Rdm1 protein_coding retained_intron MGP_AJ_T0032305.1 MGP_AJ_G0019124.1 mouse_genomes_project 11 98891030 98906631 + MGP_AJ_P0032305 Klhl10 protein_coding protein_coding MGP_AJ_T0032306.1 MGP_AJ_G0019124.1 mouse_genomes_project 11 98891040 98895109 + MGP_AJ_P0032306 Klhl10 protein_coding protein_coding MGP_AJ_T0006376.1 MGP_AJ_G0005312.1 mouse_genomes_project 11 118019201 118034566 - Gm11755 lincRNA lincRNA MGP_AJ_T0012563.1 MGP_AJ_G0010658.1 mouse_genomes_project 11 30485593 30485981 - processed_pseudogene processed_pseudogene MGP_AJ_T0100602.1 MGP_AJ_G0038568.1 mouse_genomes_project 11 67484886 67485030 - Gm25835 snoRNA snoRNA MGP_AJ_T0032106.1 MGP_AJ_G0019035.1 mouse_genomes_project 11 97019890 97033665 + MGP_AJ_P0032106 Gsdma protein_coding protein_coding MGP_AJ_T0032275.1 MGP_AJ_G0019119.1 mouse_genomes_project 11 98793653 98802623 - MGP_AJ_P0032275 Hap1 protein_coding protein_coding MGP_AJ_T0032276.1 MGP_AJ_G0019119.1 mouse_genomes_project 11 98795183 98802582 - MGP_AJ_P0032276 Hap1 protein_coding protein_coding MGP_AJ_T0032277.1 MGP_AJ_G0019119.1 mouse_genomes_project 11 98795622 98800531 - MGP_AJ_P0032277 Hap1 protein_coding protein_coding MGP_AJ_T0032278.1 MGP_AJ_G0019119.1 mouse_genomes_project 11 98795742 98798397 - MGP_AJ_P0032278 Hap1 protein_coding protein_coding MGP_AJ_T0032279.1 MGP_AJ_G0019119.1 mouse_genomes_project 11 98798747 98801874 - MGP_AJ_P0032279 Hap1 protein_coding protein_coding MGP_AJ_T0012705.1 MGP_AJ_G0010800.1 mouse_genomes_project 11 83259425 83259834 - processed_pseudogene processed_pseudogene MGP_AJ_T0012725.1 MGP_AJ_G0010820.1 mouse_genomes_project 11 93436990 93437581 + processed_pseudogene processed_pseudogene MGP_AJ_T0006317.1 MGP_AJ_G0005269.1 mouse_genomes_project 11 89031968 89119699 + 4930405D11Rik lincRNA lincRNA MGP_AJ_T0006318.1 MGP_AJ_G0005269.1 mouse_genomes_project 11 89106773 89119643 + 4930405D11Rik lincRNA lincRNA MGP_AJ_T0006319.1 MGP_AJ_G0005269.1 mouse_genomes_project 11 89106798 89119549 + 4930405D11Rik lincRNA lincRNA MGP_AJ_T0030646.1 MGP_AJ_G0018677.1 mouse_genomes_project 11 73345289 73352944 - MGP_AJ_P0030646 Serpinf2 protein_coding protein_coding MGP_AJ_T0030647.1 MGP_AJ_G0018677.1 mouse_genomes_project 11 73345293 73353545 - MGP_AJ_P0030647 Serpinf2 protein_coding protein_coding MGP_AJ_T0030648.1 MGP_AJ_G0018677.1 mouse_genomes_project 11 73349460 73353635 - MGP_AJ_P0030648 Serpinf2 protein_coding protein_coding MGP_AJ_T0030649.1 MGP_AJ_G0018677.1 mouse_genomes_project 11 73349979 73353622 - MGP_AJ_P0030649 Serpinf2 protein_coding nonsense_mediated_decay MGP_AJ_T0033249.1 MGP_AJ_G0019320.1 mouse_genomes_project 11 112428971 112451850 - MGP_AJ_P0033249 Fam104a protein_coding protein_coding MGP_AJ_T0012460.1 MGP_AJ_G0010555.1 mouse_genomes_project 11 804136 804951 + processed_pseudogene processed_pseudogene MGP_AJ_T0030814.1 MGP_AJ_G0018713.1 mouse_genomes_project 11 75416411 75422136 - MGP_AJ_P0030814 Ankrd13b protein_coding protein_coding MGP_AJ_T0030815.1 MGP_AJ_G0018713.1 mouse_genomes_project 11 75416411 75435366 - MGP_AJ_P0030815 Ankrd13b protein_coding protein_coding MGP_AJ_T0030816.1 MGP_AJ_G0018713.1 mouse_genomes_project 11 75416413 75419552 - Ankrd13b protein_coding retained_intron MGP_AJ_T0030817.1 MGP_AJ_G0018713.1 mouse_genomes_project 11 75416413 75435378 - MGP_AJ_P0030817 Ankrd13b protein_coding protein_coding MGP_AJ_T0030818.1 MGP_AJ_G0018713.1 mouse_genomes_project 11 75418041 75422465 - Ankrd13b protein_coding retained_intron MGP_AJ_T0030819.1 MGP_AJ_G0018713.1 mouse_genomes_project 11 75418698 75421947 - MGP_AJ_P0030819 Ankrd13b protein_coding protein_coding MGP_AJ_T0100581.1 MGP_AJ_G0038547.1 mouse_genomes_project 11 24256781 24256913 - Gm25387 snoRNA snoRNA MGP_AJ_T0100585.1 MGP_AJ_G0038551.1 mouse_genomes_project 11 42827601 42827733 + Gm22284 snoRNA snoRNA MGP_AJ_T0034037.1 MGP_AJ_G0019479.1 mouse_genomes_project 11 119487077 119490598 - MGP_AJ_P0034037 Arhgdia protein_coding protein_coding MGP_AJ_T0034038.1 MGP_AJ_G0019479.1 mouse_genomes_project 11 119487082 119490354 - MGP_AJ_P0034038 Arhgdia protein_coding protein_coding MGP_AJ_T0009757.1 MGP_AJ_G0007879.1 mouse_genomes_project 11 104197029 104197156 + Gm23990 miRNA miRNA MGP_AJ_T0003184.1 MGP_AJ_G0002952.1 mouse_genomes_project 11 57531962 57533164 - Med9os antisense antisense MGP_AJ_T0003185.1 MGP_AJ_G0002952.1 mouse_genomes_project 11 57531962 57533223 - Med9os antisense antisense MGP_AJ_T0003186.1 MGP_AJ_G0002952.1 mouse_genomes_project 11 57531962 57533224 - Med9os antisense antisense MGP_AJ_T0027942.1 MGP_AJ_G0017992.1 mouse_genomes_project 11 3232101 3236611 - MGP_AJ_P0027942 Tmed4 protein_coding protein_coding MGP_AJ_T0027943.1 MGP_AJ_G0017992.1 mouse_genomes_project 11 3233393 3236611 - Tmed4 protein_coding retained_intron MGP_AJ_T0027944.1 MGP_AJ_G0017992.1 mouse_genomes_project 11 3235481 3236606 - MGP_AJ_P0027944 Tmed4 protein_coding protein_coding MGP_AJ_T0032235.1 MGP_AJ_G0019092.1 mouse_genomes_project 11 98222730 98223995 - MGP_AJ_P0032235 2300003K06Rik protein_coding protein_coding MGP_AJ_T0028465.1 MGP_AJ_G0018112.1 mouse_genomes_project 11 29893046 29898649 - MGP_AJ_P0028465 Smim23 protein_coding protein_coding MGP_AJ_T0028466.1 MGP_AJ_G0018112.1 mouse_genomes_project 11 29894889 29898692 - MGP_AJ_P0028466 Smim23 protein_coding protein_coding MGP_AJ_T0028963.1 MGP_AJ_G0018251.1 mouse_genomes_project 11 49608621 49622249 + MGP_AJ_P0028963 Skp1a protein_coding nonsense_mediated_decay MGP_AJ_T0028964.1 MGP_AJ_G0018251.1 mouse_genomes_project 11 49608635 49624013 + MGP_AJ_P0028964 Skp1a protein_coding protein_coding MGP_AJ_T0028965.1 MGP_AJ_G0018251.1 mouse_genomes_project 11 49608663 49615582 + Skp1a protein_coding retained_intron MGP_AJ_T0028966.1 MGP_AJ_G0018251.1 mouse_genomes_project 11 49608663 49622252 + MGP_AJ_P0028966 Skp1a protein_coding protein_coding MGP_AJ_T0028967.1 MGP_AJ_G0018251.1 mouse_genomes_project 11 49608815 49624013 + MGP_AJ_P0028967 Skp1a protein_coding protein_coding MGP_AJ_T0028968.1 MGP_AJ_G0018251.1 mouse_genomes_project 11 49614021 49623213 + MGP_AJ_P0028968 Skp1a protein_coding nonsense_mediated_decay MGP_AJ_T0102266.1 MGP_AJ_G0040009.1 mouse_genomes_project 11 119677635 119679691 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0030520.1 MGP_AJ_G0018634.1 mouse_genomes_project 11 71409495 71415158 - MGP_AJ_P0030520 protein_coding protein_coding MGP_AJ_T0030521.1 MGP_AJ_G0018634.1 mouse_genomes_project 11 71409495 71415652 - MGP_AJ_P0030521 protein_coding protein_coding MGP_AJ_T0029223.1 MGP_AJ_G0018322.1 mouse_genomes_project 11 55927659 55932572 + MGP_AJ_P0029223 1810065E05Rik protein_coding protein_coding MGP_AJ_T0032485.1 MGP_AJ_G0019162.1 mouse_genomes_project 11 99783251 99787198 + MGP_AJ_P0032485 Psme3 protein_coding protein_coding MGP_AJ_T0032486.1 MGP_AJ_G0019162.1 mouse_genomes_project 11 99783251 99790732 + MGP_AJ_P0032486 Psme3 protein_coding protein_coding MGP_AJ_T0032487.1 MGP_AJ_G0019162.1 mouse_genomes_project 11 99784015 99787784 + MGP_AJ_P0032487 Psme3 protein_coding protein_coding MGP_AJ_T0032488.1 MGP_AJ_G0019162.1 mouse_genomes_project 11 99784061 99787214 + Psme3 protein_coding processed_transcript MGP_AJ_T0032489.1 MGP_AJ_G0019162.1 mouse_genomes_project 11 99787023 99789287 + Psme3 protein_coding processed_transcript MGP_AJ_T0032165.1 MGP_AJ_G0019048.1 mouse_genomes_project 11 97356000 97387904 - MGP_AJ_P0032165 Top2a protein_coding protein_coding MGP_AJ_T0032166.1 MGP_AJ_G0019048.1 mouse_genomes_project 11 97356128 97358782 - Top2a protein_coding processed_transcript MGP_AJ_T0032167.1 MGP_AJ_G0019048.1 mouse_genomes_project 11 97356524 97358428 - Top2a protein_coding processed_transcript MGP_AJ_T0032168.1 MGP_AJ_G0019048.1 mouse_genomes_project 11 97356861 97387781 - MGP_AJ_P0032168 Top2a protein_coding unknown_likely_coding MGP_AJ_T0032169.1 MGP_AJ_G0019048.1 mouse_genomes_project 11 97363004 97364318 - Top2a protein_coding processed_transcript MGP_AJ_T0032170.1 MGP_AJ_G0019048.1 mouse_genomes_project 11 97366683 97369585 - Top2a protein_coding processed_transcript MGP_AJ_T0032171.1 MGP_AJ_G0019048.1 mouse_genomes_project 11 97380080 97385930 - Top2a protein_coding processed_transcript MGP_AJ_T0032172.1 MGP_AJ_G0019048.1 mouse_genomes_project 11 97385804 97387893 - Top2a protein_coding processed_transcript MGP_AJ_T0003199.1 MGP_AJ_G0002964.1 mouse_genomes_project 11 60503934 60508322 + Zfp286os antisense antisense MGP_AJ_T0029191.1 MGP_AJ_G0018313.1 mouse_genomes_project 11 55601359 55655213 - MGP_AJ_P0029191 Gemin5 protein_coding protein_coding MGP_AJ_T0029192.1 MGP_AJ_G0018313.1 mouse_genomes_project 11 55602647 55655213 - MGP_AJ_P0029192 Gemin5 protein_coding protein_coding MGP_AJ_T0029193.1 MGP_AJ_G0018313.1 mouse_genomes_project 11 55602647 55655213 - MGP_AJ_P0029193 Gemin5 protein_coding protein_coding MGP_AJ_T0029194.1 MGP_AJ_G0018313.1 mouse_genomes_project 11 55618269 55620935 - Gemin5 protein_coding processed_transcript MGP_AJ_T0029195.1 MGP_AJ_G0018313.1 mouse_genomes_project 11 55636286 55647449 - MGP_AJ_P0029195 Gemin5 protein_coding protein_coding MGP_AJ_T0012589.1 MGP_AJ_G0010684.1 mouse_genomes_project 11 45727895 45728426 + processed_pseudogene processed_pseudogene MGP_AJ_T0033515.1 MGP_AJ_G0019375.1 mouse_genomes_project 11 114739909 114741848 + MGP_AJ_P0033515 Smim6 protein_coding protein_coding MGP_AJ_T0031093.1 MGP_AJ_G0018777.1 mouse_genomes_project 11 78330797 78386298 + MGP_AJ_P0031093 Rhbdl3 protein_coding protein_coding MGP_AJ_T0031094.1 MGP_AJ_G0018777.1 mouse_genomes_project 11 78350013 78354482 + Rhbdl3 protein_coding retained_intron MGP_AJ_T0031095.1 MGP_AJ_G0018777.1 mouse_genomes_project 11 78376548 78384025 + Rhbdl3 protein_coding retained_intron MGP_AJ_T0017192.1 MGP_AJ_G0015148.1 mouse_genomes_project 11 56753241 56755582 - 2610507I01Rik processed_transcript processed_transcript MGP_AJ_T0028757.1 MGP_AJ_G0018196.1 mouse_genomes_project 11 46549304 46550240 + MGP_AJ_P0028757 Olfr1390 protein_coding protein_coding MGP_AJ_T0006261.1 MGP_AJ_G0005230.1 mouse_genomes_project 11 64705671 64713532 + lincRNA lincRNA MGP_AJ_T0006262.1 MGP_AJ_G0005230.1 mouse_genomes_project 11 64706912 64714035 + lincRNA lincRNA MGP_AJ_T0034188.1 MGP_AJ_G0019505.1 mouse_genomes_project 11 120034929 120037392 - MGP_AJ_P0034188 Tex19.2 protein_coding protein_coding MGP_AJ_T0028670.1 MGP_AJ_G0018169.1 mouse_genomes_project 11 43734751 43752318 + MGP_AJ_P0028670 BC053393 protein_coding protein_coding MGP_AJ_T0029715.1 MGP_AJ_G0018453.1 mouse_genomes_project 11 64806736 64819396 + MGP_AJ_P0029715 Sco1 protein_coding protein_coding MGP_AJ_T0029716.1 MGP_AJ_G0018453.1 mouse_genomes_project 11 64806736 64819629 + MGP_AJ_P0029716 Sco1 protein_coding protein_coding MGP_AJ_T0029717.1 MGP_AJ_G0018453.1 mouse_genomes_project 11 64807839 64818141 + Sco1 protein_coding processed_transcript MGP_AJ_T0029718.1 MGP_AJ_G0018453.1 mouse_genomes_project 11 64812391 64821127 + Sco1 protein_coding processed_transcript MGP_AJ_T0032274.1 MGP_AJ_G0019118.1 mouse_genomes_project 11 98780746 98783334 + MGP_AJ_P0032274 Gast protein_coding protein_coding MGP_AJ_T0099316.1 MGP_AJ_G0037282.1 mouse_genomes_project 11 20410365 20410472 - Gm22753 snRNA snRNA MGP_AJ_T0102247.1 MGP_AJ_G0039990.1 mouse_genomes_project 11 81808209 81809053 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0033655.1 MGP_AJ_G0019400.1 mouse_genomes_project 11 115439310 115450408 + Aanat protein_coding processed_transcript MGP_AJ_T0033656.1 MGP_AJ_G0019400.1 mouse_genomes_project 11 115446746 115450620 + MGP_AJ_P0033656 Aanat protein_coding nonsense_mediated_decay MGP_AJ_T0033657.1 MGP_AJ_G0019400.1 mouse_genomes_project 11 115446746 115450755 + MGP_AJ_P0033657 Aanat protein_coding protein_coding MGP_AJ_T0033658.1 MGP_AJ_G0019400.1 mouse_genomes_project 11 115448632 115450620 + MGP_AJ_P0033658 Aanat protein_coding nonsense_mediated_decay MGP_AJ_T0033659.1 MGP_AJ_G0019400.1 mouse_genomes_project 11 115448827 115449340 + Aanat protein_coding processed_transcript MGP_AJ_T0012469.1 MGP_AJ_G0010564.1 mouse_genomes_project 11 3416130 3416450 + processed_pseudogene processed_pseudogene MGP_AJ_T0009736.1 MGP_AJ_G0007858.1 mouse_genomes_project 11 95140416 95140489 + Mir152 miRNA miRNA MGP_AJ_T0012647.1 MGP_AJ_G0010742.1 mouse_genomes_project 11 60492819 60494022 - processed_pseudogene processed_pseudogene MGP_AJ_T0032086.1 MGP_AJ_G0019030.1 mouse_genomes_project 11 96811467 96893826 - MGP_AJ_P0032086 Ikzf3 protein_coding protein_coding MGP_AJ_T0032087.1 MGP_AJ_G0019030.1 mouse_genomes_project 11 96813823 96823910 - Ikzf3 protein_coding processed_transcript MGP_AJ_T0032088.1 MGP_AJ_G0019030.1 mouse_genomes_project 11 96830704 96835390 - Ikzf3 protein_coding processed_transcript MGP_AJ_T0032089.1 MGP_AJ_G0019030.1 mouse_genomes_project 11 96858831 96894057 - Ikzf3 protein_coding retained_intron MGP_AJ_T0029874.1 MGP_AJ_G0018487.1 mouse_genomes_project 11 66886705 66897940 + MGP_AJ_P0029874 Per1 protein_coding protein_coding MGP_AJ_T0029875.1 MGP_AJ_G0018487.1 mouse_genomes_project 11 66890429 66901442 + MGP_AJ_P0029875 Per1 protein_coding protein_coding MGP_AJ_T0029876.1 MGP_AJ_G0018487.1 mouse_genomes_project 11 66891633 66892530 + MGP_AJ_P0029876 Per1 protein_coding protein_coding MGP_AJ_T0029877.1 MGP_AJ_G0018487.1 mouse_genomes_project 11 66891639 66901430 + MGP_AJ_P0029877 Per1 protein_coding protein_coding MGP_AJ_T0029878.1 MGP_AJ_G0018487.1 mouse_genomes_project 11 66891990 66897778 + MGP_AJ_P0029878 Per1 protein_coding nonsense_mediated_decay MGP_AJ_T0029879.1 MGP_AJ_G0018487.1 mouse_genomes_project 11 66892003 66901442 + MGP_AJ_P0029879 Per1 protein_coding protein_coding MGP_AJ_T0017199.1 MGP_AJ_G0015150.1 mouse_genomes_project 11 57298912 57305747 - 1700007J10Rik processed_transcript processed_transcript MGP_AJ_T0017200.1 MGP_AJ_G0015150.1 mouse_genomes_project 11 57298912 57314274 - 1700007J10Rik processed_transcript processed_transcript MGP_AJ_T0012538.1 MGP_AJ_G0010633.1 mouse_genomes_project 11 24355479 24355876 - processed_pseudogene processed_pseudogene MGP_AJ_T0012504.1 MGP_AJ_G0010599.1 mouse_genomes_project 11 16245385 16245529 - processed_pseudogene processed_pseudogene MGP_AJ_T0006345.1 MGP_AJ_G0005289.1 mouse_genomes_project 11 108528849 108531448 + 1700023C21Rik lincRNA lincRNA MGP_AJ_T0028610.1 MGP_AJ_G0018153.1 mouse_genomes_project 11 41625651 41646145 - MGP_AJ_P0028610 Ublcp1 protein_coding protein_coding MGP_AJ_T0028611.1 MGP_AJ_G0018153.1 mouse_genomes_project 11 41625653 41633943 - Ublcp1 protein_coding processed_transcript MGP_AJ_T0028612.1 MGP_AJ_G0018153.1 mouse_genomes_project 11 41625653 41636530 - Ublcp1 protein_coding processed_transcript MGP_AJ_T0028613.1 MGP_AJ_G0018153.1 mouse_genomes_project 11 41631252 41639664 - Ublcp1 protein_coding processed_transcript MGP_AJ_T0028614.1 MGP_AJ_G0018153.1 mouse_genomes_project 11 41631956 41637053 - Ublcp1 protein_coding processed_transcript MGP_AJ_T0028615.1 MGP_AJ_G0018153.1 mouse_genomes_project 11 41641266 41642720 - Ublcp1 protein_coding processed_transcript MGP_AJ_T0029170.1 MGP_AJ_G0018305.1 mouse_genomes_project 11 54955309 54990278 - MGP_AJ_P0029170 Fam114a2 protein_coding unknown_likely_coding MGP_AJ_T0029171.1 MGP_AJ_G0018305.1 mouse_genomes_project 11 54956184 54990295 - MGP_AJ_P0029171 Fam114a2 protein_coding protein_coding MGP_AJ_T0029172.1 MGP_AJ_G0018305.1 mouse_genomes_project 11 54977058 54979092 - Fam114a2 protein_coding processed_transcript MGP_AJ_T0029173.1 MGP_AJ_G0018305.1 mouse_genomes_project 11 54979038 54990294 - Fam114a2 protein_coding processed_transcript MGP_AJ_T0003350.1 MGP_AJ_G0003085.1 mouse_genomes_project 11 116660137 116661554 - Gm11724 antisense antisense MGP_AJ_T0017254.1 MGP_AJ_G0015182.1 mouse_genomes_project 11 98796020 98797437 - Gm20394 processed_transcript processed_transcript MGP_AJ_T0030177.1 MGP_AJ_G0018555.1 mouse_genomes_project 11 68067052 68069659 - MGP_AJ_P0030177 0610010K14Rik protein_coding protein_coding MGP_AJ_T0030179.1 MGP_AJ_G0018555.1 mouse_genomes_project 11 68067060 68069769 - MGP_AJ_P0030179 0610010K14Rik protein_coding protein_coding MGP_AJ_T0030180.1 MGP_AJ_G0018555.1 mouse_genomes_project 11 68067060 68069759 - MGP_AJ_P0030180 0610010K14Rik protein_coding protein_coding MGP_AJ_T0030181.1 MGP_AJ_G0018555.1 mouse_genomes_project 11 68067060 68069708 - MGP_AJ_P0030181 0610010K14Rik protein_coding protein_coding MGP_AJ_T0030182.1 MGP_AJ_G0018555.1 mouse_genomes_project 11 68067060 68068051 - MGP_AJ_P0030182 0610010K14Rik protein_coding protein_coding MGP_AJ_T0030184.1 MGP_AJ_G0018555.1 mouse_genomes_project 11 68067216 68069533 - MGP_AJ_P0030184 0610010K14Rik protein_coding protein_coding MGP_AJ_T0030185.1 MGP_AJ_G0018555.1 mouse_genomes_project 11 68067225 68069344 - 0610010K14Rik protein_coding processed_transcript MGP_AJ_T0030186.1 MGP_AJ_G0018555.1 mouse_genomes_project 11 68067233 68069618 - 0610010K14Rik protein_coding processed_transcript MGP_AJ_T0030187.1 MGP_AJ_G0018555.1 mouse_genomes_project 11 68067590 68069716 - MGP_AJ_P0030187 0610010K14Rik protein_coding nonsense_mediated_decay MGP_AJ_T0030188.1 MGP_AJ_G0018555.1 mouse_genomes_project 11 68068308 68069767 - 0610010K14Rik protein_coding retained_intron MGP_AJ_T0034176.1 MGP_AJ_G0019503.1 mouse_genomes_project 11 119976307 119986480 - MGP_AJ_P0034176 Sectm1b protein_coding protein_coding MGP_AJ_T0034177.1 MGP_AJ_G0019503.1 mouse_genomes_project 11 119977380 119986449 - MGP_AJ_P0034177 Sectm1b protein_coding protein_coding MGP_AJ_T0034178.1 MGP_AJ_G0019503.1 mouse_genomes_project 11 119977385 119979213 - MGP_AJ_P0034178 Sectm1b protein_coding protein_coding MGP_AJ_T0034179.1 MGP_AJ_G0019503.1 mouse_genomes_project 11 119977431 119986456 - MGP_AJ_P0034179 Sectm1b protein_coding protein_coding MGP_AJ_T0034180.1 MGP_AJ_G0019503.1 mouse_genomes_project 11 119977806 119986366 - MGP_AJ_P0034180 Sectm1b protein_coding protein_coding MGP_AJ_T0034181.1 MGP_AJ_G0019503.1 mouse_genomes_project 11 119978261 119986214 - Sectm1b protein_coding retained_intron MGP_AJ_T0034182.1 MGP_AJ_G0019503.1 mouse_genomes_project 11 119979083 119979478 - Sectm1b protein_coding processed_transcript MGP_AJ_T0032280.1 MGP_AJ_G0019120.1 mouse_genomes_project 11 98815803 98819563 - Jup protein_coding processed_transcript MGP_AJ_T0032281.1 MGP_AJ_G0019120.1 mouse_genomes_project 11 98817464 98845615 - MGP_AJ_P0032281 Jup protein_coding protein_coding MGP_AJ_T0032282.1 MGP_AJ_G0019120.1 mouse_genomes_project 11 98817904 98820952 - Jup protein_coding processed_transcript MGP_AJ_T0032283.1 MGP_AJ_G0019120.1 mouse_genomes_project 11 98819142 98845615 - MGP_AJ_P0032283 Jup protein_coding protein_coding MGP_AJ_T0032284.1 MGP_AJ_G0019120.1 mouse_genomes_project 11 98819203 98820135 - Jup protein_coding processed_transcript MGP_AJ_T0032285.1 MGP_AJ_G0019120.1 mouse_genomes_project 11 98828890 98830774 - Jup protein_coding processed_transcript MGP_AJ_T0032286.1 MGP_AJ_G0019120.1 mouse_genomes_project 11 98830996 98845629 - Jup protein_coding processed_transcript MGP_AJ_T0032287.1 MGP_AJ_G0019120.1 mouse_genomes_project 11 98831076 98834422 - Jup protein_coding processed_transcript MGP_AJ_T0032288.1 MGP_AJ_G0019120.1 mouse_genomes_project 11 98831085 98834451 - Jup protein_coding processed_transcript MGP_AJ_T0027790.1 MGP_AJ_G0017959.1 mouse_genomes_project 11 1649680 1652040 - MGP_AJ_P0027790 Uqcr10 protein_coding protein_coding MGP_AJ_T0027791.1 MGP_AJ_G0017959.1 mouse_genomes_project 11 1649682 1652032 - Uqcr10 protein_coding processed_transcript MGP_AJ_T0027792.1 MGP_AJ_G0017959.1 mouse_genomes_project 11 1649689 1651751 - Uqcr10 protein_coding processed_transcript MGP_AJ_T0031273.1 MGP_AJ_G0018833.1 mouse_genomes_project 11 82231239 82282450 - MGP_AJ_P0031273 Tada2a protein_coding protein_coding MGP_AJ_T0031274.1 MGP_AJ_G0018833.1 mouse_genomes_project 11 82231851 82235272 - Tada2a protein_coding processed_transcript MGP_AJ_T0031275.1 MGP_AJ_G0018833.1 mouse_genomes_project 11 82231952 82246229 - MGP_AJ_P0031275 Tada2a protein_coding protein_coding MGP_AJ_T0031276.1 MGP_AJ_G0018833.1 mouse_genomes_project 11 82234353 82239878 - Tada2a protein_coding processed_transcript MGP_AJ_T0031277.1 MGP_AJ_G0018833.1 mouse_genomes_project 11 82237736 82239930 - Tada2a protein_coding processed_transcript MGP_AJ_T0012718.1 MGP_AJ_G0010813.1 mouse_genomes_project 11 88760669 88761332 - processed_pseudogene processed_pseudogene MGP_AJ_T0100622.1 MGP_AJ_G0038588.1 mouse_genomes_project 11 94311457 94311672 + Gm24949 snoRNA snoRNA MGP_AJ_T0032782.1 MGP_AJ_G0019216.1 mouse_genomes_project 11 101429280 101430845 + MGP_AJ_P0032782 Fam187a protein_coding protein_coding MGP_AJ_T0029763.1 MGP_AJ_G0018466.1 mouse_genomes_project 11 65693620 65714801 - Cfap52 protein_coding processed_transcript MGP_AJ_T0029764.1 MGP_AJ_G0018466.1 mouse_genomes_project 11 65693622 65734953 - MGP_AJ_P0029764 Cfap52 protein_coding protein_coding MGP_AJ_T0029765.1 MGP_AJ_G0018466.1 mouse_genomes_project 11 65693765 65699562 - Cfap52 protein_coding processed_transcript MGP_AJ_T0029766.1 MGP_AJ_G0018466.1 mouse_genomes_project 11 65707495 65734962 - MGP_AJ_P0029766 Cfap52 protein_coding protein_coding MGP_AJ_T0012518.1 MGP_AJ_G0010613.1 mouse_genomes_project 11 18207386 18207566 - processed_pseudogene processed_pseudogene MGP_AJ_T0032622.1 MGP_AJ_G0019193.1 mouse_genomes_project 11 100703455 100707917 + MGP_AJ_P0032622 G6pc3 protein_coding protein_coding MGP_AJ_T0032623.1 MGP_AJ_G0019193.1 mouse_genomes_project 11 100703504 100707917 + MGP_AJ_P0032623 G6pc3 protein_coding protein_coding MGP_AJ_T0032624.1 MGP_AJ_G0019193.1 mouse_genomes_project 11 100703590 100705977 + G6pc3 protein_coding processed_transcript MGP_AJ_T0032625.1 MGP_AJ_G0019193.1 mouse_genomes_project 11 100703661 100707036 + G6pc3 protein_coding processed_transcript MGP_AJ_T0032626.1 MGP_AJ_G0019193.1 mouse_genomes_project 11 100705644 100707488 + G6pc3 protein_coding processed_transcript MGP_AJ_T0032627.1 MGP_AJ_G0019193.1 mouse_genomes_project 11 100705854 100707434 + G6pc3 protein_coding processed_transcript MGP_AJ_T0032628.1 MGP_AJ_G0019193.1 mouse_genomes_project 11 100705860 100707587 + G6pc3 protein_coding processed_transcript MGP_AJ_T0032220.1 MGP_AJ_G0019077.1 mouse_genomes_project 11 98010478 98011560 - MGP_AJ_P0032220 Krtap4-2 protein_coding protein_coding MGP_AJ_T0028790.1 MGP_AJ_G0018209.1 mouse_genomes_project 11 47401754 47442427 + MGP_AJ_P0028790 Tbc1d9b protein_coding protein_coding MGP_AJ_T0028791.1 MGP_AJ_G0018209.1 mouse_genomes_project 11 47401754 47443182 + MGP_AJ_P0028791 Tbc1d9b protein_coding protein_coding MGP_AJ_T0028792.1 MGP_AJ_G0018209.1 mouse_genomes_project 11 47401760 47410788 + Tbc1d9b protein_coding processed_transcript MGP_AJ_T0028793.1 MGP_AJ_G0018209.1 mouse_genomes_project 11 47405756 47410898 + Tbc1d9b protein_coding processed_transcript MGP_AJ_T0028794.1 MGP_AJ_G0018209.1 mouse_genomes_project 11 47415512 47420321 + Tbc1d9b protein_coding processed_transcript MGP_AJ_T0028795.1 MGP_AJ_G0018209.1 mouse_genomes_project 11 47416901 47421556 + Tbc1d9b protein_coding processed_transcript MGP_AJ_T0028796.1 MGP_AJ_G0018209.1 mouse_genomes_project 11 47418246 47420080 + Tbc1d9b protein_coding processed_transcript MGP_AJ_T0028797.1 MGP_AJ_G0018209.1 mouse_genomes_project 11 47431832 47434265 + Tbc1d9b protein_coding processed_transcript MGP_AJ_T0003190.1 MGP_AJ_G0002956.1 mouse_genomes_project 11 59222327 59223150 + Gm12272 antisense antisense MGP_AJ_T0029150.1 MGP_AJ_G0018298.1 mouse_genomes_project 11 52722905 52792237 - MGP_AJ_P0029150 Fat2 protein_coding unknown_likely_coding MGP_AJ_T0012661.1 MGP_AJ_G0010756.1 mouse_genomes_project 11 68193833 68194477 + processed_pseudogene processed_pseudogene MGP_AJ_T0012735.1 MGP_AJ_G0010830.1 mouse_genomes_project 11 96094290 96094602 + processed_pseudogene processed_pseudogene MGP_AJ_T0029926.1 MGP_AJ_G0018499.1 mouse_genomes_project 11 67192619 67197163 - protein_coding processed_transcript MGP_AJ_T0029927.1 MGP_AJ_G0018499.1 mouse_genomes_project 11 67195461 67196865 - MGP_AJ_P0029927 protein_coding protein_coding MGP_AJ_T0033845.1 MGP_AJ_G0019442.1 mouse_genomes_project 11 117974355 117983004 - MGP_AJ_P0033845 Cbx4 protein_coding protein_coding MGP_AJ_T0033846.1 MGP_AJ_G0019442.1 mouse_genomes_project 11 117978155 117983004 - Cbx4 protein_coding processed_transcript MGP_AJ_T0029447.1 MGP_AJ_G0018396.1 mouse_genomes_project 11 58513942 58544309 + MGP_AJ_P0029447 Dhrs7b protein_coding protein_coding MGP_AJ_T0099364.1 MGP_AJ_G0037330.1 mouse_genomes_project 11 93179884 93180009 + Gm22456 snRNA snRNA MGP_AJ_T0012682.1 MGP_AJ_G0010777.1 mouse_genomes_project 11 75048888 75049192 - processed_pseudogene processed_pseudogene MGP_AJ_T0030898.1 MGP_AJ_G0018728.1 mouse_genomes_project 11 76029754 76036465 - Eral1 protein_coding retained_intron MGP_AJ_T0030899.1 MGP_AJ_G0018728.1 mouse_genomes_project 11 76029754 76036465 - MGP_AJ_P0030899 Eral1 protein_coding protein_coding MGP_AJ_T0030900.1 MGP_AJ_G0018728.1 mouse_genomes_project 11 76030909 76032350 - Eral1 protein_coding retained_intron MGP_AJ_T0027938.1 MGP_AJ_G0017991.1 mouse_genomes_project 11 3219334 3228185 - MGP_AJ_P0027938 Ddx56 protein_coding protein_coding MGP_AJ_T0027939.1 MGP_AJ_G0017991.1 mouse_genomes_project 11 3225719 3226805 - Ddx56 protein_coding retained_intron MGP_AJ_T0027940.1 MGP_AJ_G0017991.1 mouse_genomes_project 11 3226049 3228185 - MGP_AJ_P0027940 Ddx56 protein_coding protein_coding MGP_AJ_T0027941.1 MGP_AJ_G0017991.1 mouse_genomes_project 11 3227458 3228159 - Ddx56 protein_coding retained_intron MGP_AJ_T0033208.1 MGP_AJ_G0019311.1 mouse_genomes_project 11 108868236 108943171 - MGP_AJ_P0033208 Abca6 protein_coding protein_coding MGP_AJ_T0033209.1 MGP_AJ_G0019311.1 mouse_genomes_project 11 108927689 108943171 - Abca6 protein_coding processed_transcript MGP_AJ_T0003366.1 MGP_AJ_G0003097.1 mouse_genomes_project 11 119599080 119619760 - Gm17178 antisense antisense MGP_AJ_T0034002.1 MGP_AJ_G0019471.1 mouse_genomes_project 11 119373039 119375781 - Arl16 protein_coding processed_transcript MGP_AJ_T0034003.1 MGP_AJ_G0019471.1 mouse_genomes_project 11 119373497 119375448 - Arl16 protein_coding processed_transcript MGP_AJ_T0034004.1 MGP_AJ_G0019471.1 mouse_genomes_project 11 119373611 119375774 - MGP_AJ_P0034004 Arl16 protein_coding protein_coding MGP_AJ_T0034005.1 MGP_AJ_G0019471.1 mouse_genomes_project 11 119373764 119375639 - Arl16 protein_coding processed_transcript MGP_AJ_T0034006.1 MGP_AJ_G0019471.1 mouse_genomes_project 11 119373771 119375508 - Arl16 protein_coding processed_transcript MGP_AJ_T0034007.1 MGP_AJ_G0019471.1 mouse_genomes_project 11 119373786 119375594 - Arl16 protein_coding processed_transcript MGP_AJ_T0034008.1 MGP_AJ_G0019471.1 mouse_genomes_project 11 119373927 119375655 - Arl16 protein_coding processed_transcript MGP_AJ_T0034009.1 MGP_AJ_G0019471.1 mouse_genomes_project 11 119373941 119375595 - Arl16 protein_coding processed_transcript MGP_AJ_T0034010.1 MGP_AJ_G0019471.1 mouse_genomes_project 11 119373943 119375570 - Arl16 protein_coding processed_transcript MGP_AJ_T0034011.1 MGP_AJ_G0019471.1 mouse_genomes_project 11 119374088 119375607 - Arl16 protein_coding processed_transcript MGP_AJ_T0034012.1 MGP_AJ_G0019471.1 mouse_genomes_project 11 119375078 119375627 - Arl16 protein_coding processed_transcript MGP_AJ_T0030714.1 MGP_AJ_G0018691.1 mouse_genomes_project 11 73927376 73931034 + MGP_AJ_P0030714 1700016K19Rik protein_coding protein_coding MGP_AJ_T0034046.1 MGP_AJ_G0019482.1 mouse_genomes_project 11 119517977 119518594 + MGP_AJ_P0034046 Npb protein_coding protein_coding MGP_AJ_T0034047.1 MGP_AJ_G0019482.1 mouse_genomes_project 11 119517977 119518594 + MGP_AJ_P0034047 Npb protein_coding protein_coding MGP_AJ_T0034048.1 MGP_AJ_G0019482.1 mouse_genomes_project 11 119518005 119518534 + MGP_AJ_P0034048 Npb protein_coding protein_coding MGP_AJ_T0033306.1 MGP_AJ_G0019332.1 mouse_genomes_project 11 113678573 113693791 + MGP_AJ_P0033306 Cd300a protein_coding protein_coding MGP_AJ_T0033307.1 MGP_AJ_G0019332.1 mouse_genomes_project 11 113678573 113693791 + MGP_AJ_P0033307 Cd300a protein_coding protein_coding MGP_AJ_T0033308.1 MGP_AJ_G0019332.1 mouse_genomes_project 11 113678827 113682062 + Cd300a protein_coding processed_transcript MGP_AJ_T0031223.1 MGP_AJ_G0018816.1 mouse_genomes_project 11 81550832 81573079 - MGP_AJ_P0031223 Mmp28 protein_coding protein_coding MGP_AJ_T0031224.1 MGP_AJ_G0018816.1 mouse_genomes_project 11 81551938 81573018 - MGP_AJ_P0031224 Mmp28 protein_coding protein_coding MGP_AJ_T0031225.1 MGP_AJ_G0018816.1 mouse_genomes_project 11 81551938 81573128 - MGP_AJ_P0031225 Mmp28 protein_coding protein_coding MGP_AJ_T0031226.1 MGP_AJ_G0018816.1 mouse_genomes_project 11 81553126 81573049 - MGP_AJ_P0031226 Mmp28 protein_coding protein_coding MGP_AJ_T0031227.1 MGP_AJ_G0018816.1 mouse_genomes_project 11 81561424 81573128 - Mmp28 protein_coding processed_transcript MGP_AJ_T0006185.1 MGP_AJ_G0005164.1 mouse_genomes_project 11 19361616 19362501 - Gm12050 lincRNA lincRNA MGP_AJ_T0031798.1 MGP_AJ_G0018958.1 mouse_genomes_project 11 94099775 94112044 - MGP_AJ_P0031798 Abi3 protein_coding protein_coding MGP_AJ_T0031800.1 MGP_AJ_G0018958.1 mouse_genomes_project 11 94101645 94112111 - Abi3 protein_coding processed_transcript MGP_AJ_T0031801.1 MGP_AJ_G0018958.1 mouse_genomes_project 11 94102412 94105571 - MGP_AJ_P0031801 Abi3 protein_coding protein_coding MGP_AJ_T0031802.1 MGP_AJ_G0018958.1 mouse_genomes_project 11 94106743 94111733 - Abi3 protein_coding processed_transcript MGP_AJ_T0032583.1 MGP_AJ_G0019184.1 mouse_genomes_project 11 100495251 100503237 + MGP_AJ_P0032583 1700006E09Rik protein_coding protein_coding MGP_AJ_T0032584.1 MGP_AJ_G0019184.1 mouse_genomes_project 11 100495256 100501830 + MGP_AJ_P0032584 1700006E09Rik protein_coding protein_coding MGP_AJ_T0032585.1 MGP_AJ_G0019184.1 mouse_genomes_project 11 100498033 100503245 + MGP_AJ_P0032585 1700006E09Rik protein_coding protein_coding MGP_AJ_T0032599.1 MGP_AJ_G0019187.1 mouse_genomes_project 11 100567752 100600004 - MGP_AJ_P0032599 Mpp2 protein_coding protein_coding MGP_AJ_T0032600.1 MGP_AJ_G0019187.1 mouse_genomes_project 11 100568261 100594010 - MGP_AJ_P0032600 Mpp2 protein_coding protein_coding MGP_AJ_T0032601.1 MGP_AJ_G0019187.1 mouse_genomes_project 11 100572834 100593945 - Mpp2 protein_coding processed_transcript MGP_AJ_T0032602.1 MGP_AJ_G0019187.1 mouse_genomes_project 11 100575405 100597262 - Mpp2 protein_coding retained_intron MGP_AJ_T0032603.1 MGP_AJ_G0019187.1 mouse_genomes_project 11 100591324 100599956 - Mpp2 protein_coding processed_transcript MGP_AJ_T0032604.1 MGP_AJ_G0019187.1 mouse_genomes_project 11 100591378 100599944 - Mpp2 protein_coding processed_transcript MGP_AJ_T0012506.1 MGP_AJ_G0010601.1 mouse_genomes_project 11 16606228 16607346 + processed_pseudogene processed_pseudogene MGP_AJ_T0012714.1 MGP_AJ_G0010809.1 mouse_genomes_project 11 86146269 86146681 + processed_pseudogene processed_pseudogene MGP_AJ_T0029216.1 MGP_AJ_G0018320.1 mouse_genomes_project 11 55819410 55837086 + MGP_AJ_P0029216 Sh3bp5l protein_coding protein_coding MGP_AJ_T0029217.1 MGP_AJ_G0018320.1 mouse_genomes_project 11 55819436 55837083 + MGP_AJ_P0029217 Sh3bp5l protein_coding protein_coding MGP_AJ_T0029218.1 MGP_AJ_G0018320.1 mouse_genomes_project 11 55819729 55820196 + Sh3bp5l protein_coding processed_transcript MGP_AJ_T0029219.1 MGP_AJ_G0018320.1 mouse_genomes_project 11 55819961 55837078 + Sh3bp5l protein_coding processed_transcript MGP_AJ_T0029220.1 MGP_AJ_G0018320.1 mouse_genomes_project 11 55834668 55836308 + Sh3bp5l protein_coding processed_transcript MGP_AJ_T0012483.1 MGP_AJ_G0010578.1 mouse_genomes_project 11 8280372 8281202 + processed_pseudogene processed_pseudogene MGP_AJ_T0028879.1 MGP_AJ_G0018229.1 mouse_genomes_project 11 48269421 48270484 + MGP_AJ_P0028879 Olfr1377 protein_coding protein_coding MGP_AJ_T0012611.1 MGP_AJ_G0010706.1 mouse_genomes_project 11 51340849 51341248 - processed_pseudogene processed_pseudogene MGP_AJ_T0032056.1 MGP_AJ_G0019022.1 mouse_genomes_project 11 96695775 96704484 + MGP_AJ_P0032056 Ppp1r1b protein_coding protein_coding MGP_AJ_T0032057.1 MGP_AJ_G0019022.1 mouse_genomes_project 11 96697536 96704469 + Ppp1r1b protein_coding retained_intron MGP_AJ_T0032058.1 MGP_AJ_G0019022.1 mouse_genomes_project 11 96697896 96704072 + Ppp1r1b protein_coding retained_intron MGP_AJ_T0032059.1 MGP_AJ_G0019022.1 mouse_genomes_project 11 96698170 96703967 + Ppp1r1b protein_coding processed_transcript MGP_AJ_T0032060.1 MGP_AJ_G0019022.1 mouse_genomes_project 11 96701277 96703784 + Ppp1r1b protein_coding processed_transcript MGP_AJ_T0017291.1 MGP_AJ_G0015200.1 mouse_genomes_project 11 119134814 119136598 - 2900052L18Rik processed_transcript processed_transcript MGP_AJ_T0028706.1 MGP_AJ_G0018180.1 mouse_genomes_project 11 46073783 46074620 - MGP_AJ_P0028706 Psme2b protein_coding protein_coding MGP_AJ_T0032574.1 MGP_AJ_G0019181.1 mouse_genomes_project 11 100387940 100404807 - MGP_AJ_P0032574 Meox1 protein_coding protein_coding MGP_AJ_T0031626.1 MGP_AJ_G0018917.1 mouse_genomes_project 11 92224991 92270542 + Spag9 protein_coding processed_transcript MGP_AJ_T0031627.1 MGP_AJ_G0018917.1 mouse_genomes_project 11 92225003 92277559 + Spag9 protein_coding processed_transcript MGP_AJ_T0031628.1 MGP_AJ_G0018917.1 mouse_genomes_project 11 92225003 92351278 + MGP_AJ_P0031628 Spag9 protein_coding protein_coding MGP_AJ_T0031629.1 MGP_AJ_G0018917.1 mouse_genomes_project 11 92270483 92323544 + MGP_AJ_P0031629 Spag9 protein_coding protein_coding MGP_AJ_T0031630.1 MGP_AJ_G0018917.1 mouse_genomes_project 11 92271031 92332473 + MGP_AJ_P0031630 Spag9 protein_coding protein_coding MGP_AJ_T0031631.1 MGP_AJ_G0018917.1 mouse_genomes_project 11 92271103 92287310 + Spag9 protein_coding processed_transcript MGP_AJ_T0031632.1 MGP_AJ_G0018917.1 mouse_genomes_project 11 92271118 92351273 + MGP_AJ_P0031632 Spag9 protein_coding protein_coding MGP_AJ_T0031633.1 MGP_AJ_G0018917.1 mouse_genomes_project 11 92271118 92351273 + MGP_AJ_P0031633 Spag9 protein_coding protein_coding MGP_AJ_T0031634.1 MGP_AJ_G0018917.1 mouse_genomes_project 11 92271181 92351278 + MGP_AJ_P0031634 Spag9 protein_coding protein_coding MGP_AJ_T0031635.1 MGP_AJ_G0018917.1 mouse_genomes_project 11 92271278 92351276 + MGP_AJ_P0031635 Spag9 protein_coding protein_coding MGP_AJ_T0031636.1 MGP_AJ_G0018917.1 mouse_genomes_project 11 92297637 92351279 + MGP_AJ_P0031636 Spag9 protein_coding protein_coding MGP_AJ_T0031637.1 MGP_AJ_G0018917.1 mouse_genomes_project 11 92297731 92319912 + Spag9 protein_coding processed_transcript MGP_AJ_T0029230.1 MGP_AJ_G0018328.1 mouse_genomes_project 11 56015549 56049293 - MGP_AJ_P0029230 protein_coding protein_coding MGP_AJ_T0032263.1 MGP_AJ_G0019113.1 mouse_genomes_project 11 98610749 98613618 - Krt14 protein_coding processed_transcript MGP_AJ_T0032264.1 MGP_AJ_G0019113.1 mouse_genomes_project 11 98610749 98615112 - MGP_AJ_P0032264 Krt14 protein_coding protein_coding MGP_AJ_T0012531.1 MGP_AJ_G0010626.1 mouse_genomes_project 11 20855008 20855267 - processed_pseudogene processed_pseudogene MGP_AJ_T0003293.1 MGP_AJ_G0003035.1 mouse_genomes_project 11 98458672 98492314 + Gm11571 antisense antisense MGP_AJ_T0098537.1 MGP_AJ_G0036521.1 mouse_genomes_project 11 48093716 48093829 + Gm23392 rRNA rRNA MGP_AJ_T0003162.1 MGP_AJ_G0002933.1 mouse_genomes_project 11 50863779 50865014 - Gm12212 antisense antisense MGP_AJ_T0003257.1 MGP_AJ_G0003010.1 mouse_genomes_project 11 87082758 87112679 + 4930556N13Rik antisense antisense MGP_AJ_T0030613.1 MGP_AJ_G0018669.1 mouse_genomes_project 11 72834536 73077013 + MGP_AJ_P0030613 Smg6 protein_coding protein_coding MGP_AJ_T0030614.1 MGP_AJ_G0018669.1 mouse_genomes_project 11 72839240 73077013 + MGP_AJ_P0030614 Smg6 protein_coding nonsense_mediated_decay MGP_AJ_T0030615.1 MGP_AJ_G0018669.1 mouse_genomes_project 11 72899568 72902414 + Smg6 protein_coding retained_intron MGP_AJ_T0030616.1 MGP_AJ_G0018669.1 mouse_genomes_project 11 72904060 73050126 + MGP_AJ_P0030616 Smg6 protein_coding protein_coding MGP_AJ_T0030617.1 MGP_AJ_G0018669.1 mouse_genomes_project 11 73043191 73050126 + Smg6 protein_coding processed_transcript MGP_AJ_T0030618.1 MGP_AJ_G0018669.1 mouse_genomes_project 11 73072207 73075746 + Smg6 protein_coding processed_transcript MGP_AJ_T0012567.1 MGP_AJ_G0010662.1 mouse_genomes_project 11 33127330 33128066 + processed_pseudogene processed_pseudogene MGP_AJ_T0032694.1 MGP_AJ_G0019202.1 mouse_genomes_project 11 100931027 100935584 - MGP_AJ_P0032694 Slc25a39 protein_coding protein_coding MGP_AJ_T0032695.1 MGP_AJ_G0019202.1 mouse_genomes_project 11 100931027 100935529 - MGP_AJ_P0032695 Slc25a39 protein_coding protein_coding MGP_AJ_T0032696.1 MGP_AJ_G0019202.1 mouse_genomes_project 11 100931084 100932536 - MGP_AJ_P0032696 Slc25a39 protein_coding protein_coding MGP_AJ_T0032697.1 MGP_AJ_G0019202.1 mouse_genomes_project 11 100931187 100935546 - Slc25a39 protein_coding retained_intron MGP_AJ_T0032698.1 MGP_AJ_G0019202.1 mouse_genomes_project 11 100931833 100935548 - MGP_AJ_P0032698 Slc25a39 protein_coding nonsense_mediated_decay MGP_AJ_T0032699.1 MGP_AJ_G0019202.1 mouse_genomes_project 11 100932060 100935496 - Slc25a39 protein_coding retained_intron MGP_AJ_T0032700.1 MGP_AJ_G0019202.1 mouse_genomes_project 11 100932074 100934856 - MGP_AJ_P0032700 Slc25a39 protein_coding protein_coding MGP_AJ_T0032701.1 MGP_AJ_G0019202.1 mouse_genomes_project 11 100932104 100935527 - MGP_AJ_P0032701 Slc25a39 protein_coding nonsense_mediated_decay MGP_AJ_T0032702.1 MGP_AJ_G0019202.1 mouse_genomes_project 11 100932431 100935503 - Slc25a39 protein_coding retained_intron MGP_AJ_T0032703.1 MGP_AJ_G0019202.1 mouse_genomes_project 11 100932526 100935355 - MGP_AJ_P0032703 Slc25a39 protein_coding protein_coding MGP_AJ_T0032704.1 MGP_AJ_G0019202.1 mouse_genomes_project 11 100932651 100934995 - MGP_AJ_P0032704 Slc25a39 protein_coding protein_coding MGP_AJ_T0032705.1 MGP_AJ_G0019202.1 mouse_genomes_project 11 100932829 100935423 - MGP_AJ_P0032705 Slc25a39 protein_coding protein_coding MGP_AJ_T0032706.1 MGP_AJ_G0019202.1 mouse_genomes_project 11 100932896 100935985 - MGP_AJ_P0032706 Slc25a39 protein_coding protein_coding MGP_AJ_T0032707.1 MGP_AJ_G0019202.1 mouse_genomes_project 11 100933065 100934848 - Slc25a39 protein_coding processed_transcript MGP_AJ_T0032708.1 MGP_AJ_G0019202.1 mouse_genomes_project 11 100933778 100934924 - Slc25a39 protein_coding retained_intron MGP_AJ_T0102227.1 MGP_AJ_G0039970.1 mouse_genomes_project 11 43702946 43703246 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0012464.1 MGP_AJ_G0010559.1 mouse_genomes_project 11 2461684 2461939 - processed_pseudogene processed_pseudogene MGP_AJ_T0098533.1 MGP_AJ_G0036517.1 mouse_genomes_project 11 8114605 8114735 + Gm23065 rRNA rRNA MGP_AJ_T0006183.1 MGP_AJ_G0005162.1 mouse_genomes_project 11 17055134 17058012 - lincRNA lincRNA MGP_AJ_T0012535.1 MGP_AJ_G0010630.1 mouse_genomes_project 11 23755746 23768725 + processed_pseudogene processed_pseudogene MGP_AJ_T0032464.1 MGP_AJ_G0019159.1 mouse_genomes_project 11 99744956 99745935 - MGP_AJ_P0032464 Coa3 protein_coding protein_coding MGP_AJ_T0032465.1 MGP_AJ_G0019159.1 mouse_genomes_project 11 99744959 99746106 - MGP_AJ_P0032465 Coa3 protein_coding protein_coding MGP_AJ_T0027659.1 MGP_AJ_G0017929.1 mouse_genomes_project 11 257901 284726 - Limk2 protein_coding processed_transcript MGP_AJ_T0027660.1 MGP_AJ_G0017929.1 mouse_genomes_project 11 257901 323214 - MGP_AJ_P0027660 Limk2 protein_coding protein_coding MGP_AJ_T0027661.1 MGP_AJ_G0017929.1 mouse_genomes_project 11 257901 284726 - MGP_AJ_P0027661 Limk2 protein_coding protein_coding MGP_AJ_T0027662.1 MGP_AJ_G0017929.1 mouse_genomes_project 11 259385 284371 - MGP_AJ_P0027662 Limk2 protein_coding protein_coding MGP_AJ_T0027663.1 MGP_AJ_G0017929.1 mouse_genomes_project 11 263824 266221 - Limk2 protein_coding processed_transcript MGP_AJ_T0027664.1 MGP_AJ_G0017929.1 mouse_genomes_project 11 266173 269272 - Limk2 protein_coding processed_transcript MGP_AJ_T0027665.1 MGP_AJ_G0017929.1 mouse_genomes_project 11 266811 269607 - Limk2 protein_coding processed_transcript MGP_AJ_T0027666.1 MGP_AJ_G0017929.1 mouse_genomes_project 11 269271 323214 - Limk2 protein_coding processed_transcript MGP_AJ_T0027667.1 MGP_AJ_G0017929.1 mouse_genomes_project 11 269588 270110 - Limk2 protein_coding processed_transcript MGP_AJ_T0027668.1 MGP_AJ_G0017929.1 mouse_genomes_project 11 271601 282511 - Limk2 protein_coding processed_transcript MGP_AJ_T0027669.1 MGP_AJ_G0017929.1 mouse_genomes_project 11 273884 284685 - Limk2 protein_coding processed_transcript MGP_AJ_T0027670.1 MGP_AJ_G0017929.1 mouse_genomes_project 11 310813 323229 - Limk2 protein_coding processed_transcript MGP_AJ_T0030227.1 MGP_AJ_G0018567.1 mouse_genomes_project 11 68354373 68355474 - MGP_AJ_P0030227 Vmo1 protein_coding protein_coding MGP_AJ_T0027890.1 MGP_AJ_G0017978.1 mouse_genomes_project 11 2677593 2709731 - MGP_AJ_P0027890 Urgcp protein_coding protein_coding MGP_AJ_T0027891.1 MGP_AJ_G0017978.1 mouse_genomes_project 11 2682207 2709767 - MGP_AJ_P0027891 Urgcp protein_coding protein_coding MGP_AJ_T0102228.1 MGP_AJ_G0039971.1 mouse_genomes_project 11 43811135 43811408 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0012487.1 MGP_AJ_G0010582.1 mouse_genomes_project 11 11404035 11404438 + processed_pseudogene processed_pseudogene MGP_AJ_T0099344.1 MGP_AJ_G0037310.1 mouse_genomes_project 11 72844782 72844873 - Gm22733 snRNA snRNA MGP_AJ_T0032742.1 MGP_AJ_G0019209.1 mouse_genomes_project 11 101198120 101209739 + MGP_AJ_P0032742 Meioc protein_coding protein_coding MGP_AJ_T0032743.1 MGP_AJ_G0019209.1 mouse_genomes_project 11 101200022 101216710 + MGP_AJ_P0032743 Meioc protein_coding protein_coding MGP_AJ_T0032744.1 MGP_AJ_G0019209.1 mouse_genomes_project 11 101200057 101208555 + Meioc protein_coding processed_transcript MGP_AJ_T0009692.1 MGP_AJ_G0007814.1 mouse_genomes_project 11 62827694 62827793 - Gm25991 miRNA miRNA MGP_AJ_T0031497.1 MGP_AJ_G0018881.1 mouse_genomes_project 11 86047797 86058416 + MGP_AJ_P0031497 Mks1 protein_coding protein_coding MGP_AJ_T0031498.1 MGP_AJ_G0018881.1 mouse_genomes_project 11 86047809 86053921 + Mks1 protein_coding retained_intron MGP_AJ_T0031499.1 MGP_AJ_G0018881.1 mouse_genomes_project 11 86048257 86053921 + Mks1 protein_coding retained_intron MGP_AJ_T0031500.1 MGP_AJ_G0018881.1 mouse_genomes_project 11 86051159 86051894 + Mks1 protein_coding retained_intron MGP_AJ_T0031501.1 MGP_AJ_G0018881.1 mouse_genomes_project 11 86056546 86057874 + Mks1 protein_coding retained_intron MGP_AJ_T0030421.1 MGP_AJ_G0018606.1 mouse_genomes_project 11 70282559 70303097 - MGP_AJ_P0030421 Smtnl2 protein_coding protein_coding MGP_AJ_T0030422.1 MGP_AJ_G0018606.1 mouse_genomes_project 11 70291312 70294547 - Smtnl2 protein_coding processed_transcript MGP_AJ_T0030423.1 MGP_AJ_G0018606.1 mouse_genomes_project 11 70292924 70294180 - Smtnl2 protein_coding processed_transcript MGP_AJ_T0012708.1 MGP_AJ_G0010803.1 mouse_genomes_project 11 84124025 84124504 + processed_pseudogene processed_pseudogene MGP_AJ_T0030124.1 MGP_AJ_G0018546.1 mouse_genomes_project 11 67835119 67840345 - MGP_AJ_P0030124 Acadvl protein_coding protein_coding MGP_AJ_T0030125.1 MGP_AJ_G0018546.1 mouse_genomes_project 11 67835125 67835848 - Acadvl protein_coding retained_intron MGP_AJ_T0030126.1 MGP_AJ_G0018546.1 mouse_genomes_project 11 67835180 67840324 - MGP_AJ_P0030126 Acadvl protein_coding protein_coding MGP_AJ_T0030127.1 MGP_AJ_G0018546.1 mouse_genomes_project 11 67836158 67837511 - Acadvl protein_coding retained_intron MGP_AJ_T0030128.1 MGP_AJ_G0018546.1 mouse_genomes_project 11 67838125 67840314 - Acadvl protein_coding retained_intron MGP_AJ_T0030129.1 MGP_AJ_G0018546.1 mouse_genomes_project 11 67838979 67840348 - Acadvl protein_coding retained_intron MGP_AJ_T0030130.1 MGP_AJ_G0018546.1 mouse_genomes_project 11 67839054 67840336 - Acadvl protein_coding retained_intron MGP_AJ_T0028129.1 MGP_AJ_G0018036.1 mouse_genomes_project 11 16964327 17020277 - MGP_AJ_P0028129 Actr2 protein_coding protein_coding MGP_AJ_T0028130.1 MGP_AJ_G0018036.1 mouse_genomes_project 11 16980739 17020231 - Actr2 protein_coding processed_transcript MGP_AJ_T0028131.1 MGP_AJ_G0018036.1 mouse_genomes_project 11 17008038 17020273 - Actr2 protein_coding retained_intron MGP_AJ_T0009735.1 MGP_AJ_G0007857.1 mouse_genomes_project 11 94601750 94601860 + Mir10a miRNA miRNA MGP_AJ_T0000838.1 MGP_AJ_G0000773.1 mouse_genomes_project 11 12937659 12938276 + TEC TEC MGP_AJ_T0028543.1 MGP_AJ_G0018135.1 mouse_genomes_project 11 37907475 37913849 + MGP_AJ_P0028543 Nudcd2 protein_coding protein_coding MGP_AJ_T0028544.1 MGP_AJ_G0018135.1 mouse_genomes_project 11 37907552 37910221 + Nudcd2 protein_coding processed_transcript MGP_AJ_T0028545.1 MGP_AJ_G0018135.1 mouse_genomes_project 11 37907754 37913353 + MGP_AJ_P0028545 Nudcd2 protein_coding protein_coding MGP_AJ_T0028546.1 MGP_AJ_G0018135.1 mouse_genomes_project 11 37908013 37913286 + Nudcd2 protein_coding processed_transcript MGP_AJ_T0028547.1 MGP_AJ_G0018135.1 mouse_genomes_project 11 37910113 37913067 + Nudcd2 protein_coding processed_transcript MGP_AJ_T0033733.1 MGP_AJ_G0019416.1 mouse_genomes_project 11 116522940 116633353 + MGP_AJ_P0033733 Tnrc6c protein_coding protein_coding MGP_AJ_T0033734.1 MGP_AJ_G0019416.1 mouse_genomes_project 11 116523224 116633344 + Tnrc6c protein_coding retained_intron MGP_AJ_T0033735.1 MGP_AJ_G0019416.1 mouse_genomes_project 11 116523464 116633355 + MGP_AJ_P0033735 Tnrc6c protein_coding protein_coding MGP_AJ_T0033736.1 MGP_AJ_G0019416.1 mouse_genomes_project 11 116590623 116632178 + MGP_AJ_P0033736 Tnrc6c protein_coding protein_coding MGP_AJ_T0033737.1 MGP_AJ_G0019416.1 mouse_genomes_project 11 116612174 116619040 + Tnrc6c protein_coding retained_intron MGP_AJ_T0033738.1 MGP_AJ_G0019416.1 mouse_genomes_project 11 116618969 116621110 + Tnrc6c protein_coding retained_intron MGP_AJ_T0031327.1 MGP_AJ_G0018844.1 mouse_genomes_project 11 83121550 83126320 + Car4 protein_coding retained_intron MGP_AJ_T0031328.1 MGP_AJ_G0018844.1 mouse_genomes_project 11 83121552 83129809 + MGP_AJ_P0031328 Car4 protein_coding protein_coding MGP_AJ_T0031329.1 MGP_AJ_G0018844.1 mouse_genomes_project 11 83121575 83125683 + Car4 protein_coding processed_transcript MGP_AJ_T0031330.1 MGP_AJ_G0018844.1 mouse_genomes_project 11 83121589 83128328 + MGP_AJ_P0031330 Car4 protein_coding nonsense_mediated_decay MGP_AJ_T0031331.1 MGP_AJ_G0018844.1 mouse_genomes_project 11 83121868 83127993 + MGP_AJ_P0031331 Car4 protein_coding nonsense_mediated_decay MGP_AJ_T0031332.1 MGP_AJ_G0018844.1 mouse_genomes_project 11 83124724 83129799 + MGP_AJ_P0031332 Car4 protein_coding protein_coding MGP_AJ_T0032257.1 MGP_AJ_G0019110.1 mouse_genomes_project 11 98537460 98541652 - MGP_AJ_P0032257 Krt15 protein_coding protein_coding MGP_AJ_T0032258.1 MGP_AJ_G0019110.1 mouse_genomes_project 11 98538736 98540106 - Krt15 protein_coding retained_intron MGP_AJ_T0031586.1 MGP_AJ_G0018908.1 mouse_genomes_project 11 88862022 88869485 + MGP_AJ_P0031586 Cox11 protein_coding protein_coding MGP_AJ_T0031587.1 MGP_AJ_G0018908.1 mouse_genomes_project 11 88862038 88869864 + MGP_AJ_P0031587 Cox11 protein_coding protein_coding MGP_AJ_T0012793.1 MGP_AJ_G0010888.1 mouse_genomes_project 11 120011072 120011240 - processed_pseudogene processed_pseudogene MGP_AJ_T0034191.1 MGP_AJ_G0019507.1 mouse_genomes_project 11 120084496 120086199 + MGP_AJ_P0034191 Uts2r protein_coding protein_coding MGP_AJ_T0012622.1 MGP_AJ_G0010717.1 mouse_genomes_project 11 53938961 53939687 + processed_pseudogene processed_pseudogene MGP_AJ_T0009665.1 MGP_AJ_G0007787.1 mouse_genomes_project 11 25781905 25782013 + Mir217 miRNA miRNA MGP_AJ_T0030539.1 MGP_AJ_G0018646.1 mouse_genomes_project 11 71860510 71861549 + MGP_AJ_P0030539 Olfr23 protein_coding protein_coding MGP_AJ_T0009752.1 MGP_AJ_G0007874.1 mouse_genomes_project 11 100932962 100933030 - Mir6930 miRNA miRNA MGP_AJ_T0028564.1 MGP_AJ_G0018140.1 mouse_genomes_project 11 39562472 39777393 + MGP_AJ_P0028564 Gabrb2 protein_coding protein_coding MGP_AJ_T0028565.1 MGP_AJ_G0018140.1 mouse_genomes_project 11 39562479 39565348 + Gabrb2 protein_coding processed_transcript MGP_AJ_T0028566.1 MGP_AJ_G0018140.1 mouse_genomes_project 11 39563988 39631764 + Gabrb2 protein_coding processed_transcript MGP_AJ_T0028567.1 MGP_AJ_G0018140.1 mouse_genomes_project 11 39564019 39676180 + Gabrb2 protein_coding processed_transcript MGP_AJ_T0028568.1 MGP_AJ_G0018140.1 mouse_genomes_project 11 39564059 39775256 + MGP_AJ_P0028568 Gabrb2 protein_coding protein_coding MGP_AJ_T0031720.1 MGP_AJ_G0018935.1 mouse_genomes_project 11 92924293 92935238 - MGP_AJ_P0031720 Gm11541 protein_coding protein_coding MGP_AJ_T0031837.1 MGP_AJ_G0018972.1 mouse_genomes_project 11 94577131 94586180 + MGP_AJ_P0031837 Hoxb6 protein_coding protein_coding MGP_AJ_T0031838.1 MGP_AJ_G0018972.1 mouse_genomes_project 11 94583788 94586179 + MGP_AJ_P0031838 Hoxb6 protein_coding protein_coding MGP_AJ_T0009714.1 MGP_AJ_G0007836.1 mouse_genomes_project 11 73234262 73234383 - miRNA miRNA MGP_AJ_T0012617.1 MGP_AJ_G0010712.1 mouse_genomes_project 11 52414170 52414624 + processed_pseudogene processed_pseudogene MGP_AJ_T0030926.1 MGP_AJ_G0018734.1 mouse_genomes_project 11 76148062 76151461 + MGP_AJ_P0030926 Rab34 protein_coding protein_coding MGP_AJ_T0030927.1 MGP_AJ_G0018734.1 mouse_genomes_project 11 76148501 76151808 + MGP_AJ_P0030927 Rab34 protein_coding protein_coding MGP_AJ_T0030928.1 MGP_AJ_G0018734.1 mouse_genomes_project 11 76148862 76149929 + Rab34 protein_coding retained_intron MGP_AJ_T0030929.1 MGP_AJ_G0018734.1 mouse_genomes_project 11 76148895 76151775 + MGP_AJ_P0030929 Rab34 protein_coding protein_coding MGP_AJ_T0030930.1 MGP_AJ_G0018734.1 mouse_genomes_project 11 76149210 76150737 + Rab34 protein_coding retained_intron MGP_AJ_T0030931.1 MGP_AJ_G0018734.1 mouse_genomes_project 11 76149975 76150556 + Rab34 protein_coding retained_intron MGP_AJ_T0033660.1 MGP_AJ_G0019401.1 mouse_genomes_project 11 115451239 115478129 - MGP_AJ_P0033660 Rhbdf2 protein_coding protein_coding MGP_AJ_T0033661.1 MGP_AJ_G0019401.1 mouse_genomes_project 11 115451243 115481119 - MGP_AJ_P0033661 Rhbdf2 protein_coding protein_coding MGP_AJ_T0033662.1 MGP_AJ_G0019401.1 mouse_genomes_project 11 115454160 115455710 - Rhbdf2 protein_coding processed_transcript MGP_AJ_T0033663.1 MGP_AJ_G0019401.1 mouse_genomes_project 11 115456367 115478176 - Rhbdf2 protein_coding retained_intron MGP_AJ_T0033393.1 MGP_AJ_G0019357.1 mouse_genomes_project 11 114270514 114282937 + MGP_AJ_P0033393 Slc16a5 protein_coding protein_coding MGP_AJ_T0033394.1 MGP_AJ_G0019357.1 mouse_genomes_project 11 114270546 114277669 + MGP_AJ_P0033394 Slc16a5 protein_coding protein_coding MGP_AJ_T0033395.1 MGP_AJ_G0019357.1 mouse_genomes_project 11 114270604 114277774 + Slc16a5 protein_coding processed_transcript MGP_AJ_T0033396.1 MGP_AJ_G0019357.1 mouse_genomes_project 11 114270649 114282909 + MGP_AJ_P0033396 Slc16a5 protein_coding protein_coding MGP_AJ_T0033397.1 MGP_AJ_G0019357.1 mouse_genomes_project 11 114271840 114282937 + Slc16a5 protein_coding processed_transcript MGP_AJ_T0033398.1 MGP_AJ_G0019357.1 mouse_genomes_project 11 114271855 114273117 + Slc16a5 protein_coding processed_transcript MGP_AJ_T0033399.1 MGP_AJ_G0019357.1 mouse_genomes_project 11 114271858 114277774 + Slc16a5 protein_coding processed_transcript MGP_AJ_T0033400.1 MGP_AJ_G0019357.1 mouse_genomes_project 11 114271864 114277718 + Slc16a5 protein_coding processed_transcript MGP_AJ_T0033401.1 MGP_AJ_G0019357.1 mouse_genomes_project 11 114272668 114282145 + Slc16a5 protein_coding retained_intron MGP_AJ_T0027832.1 MGP_AJ_G0017968.1 mouse_genomes_project 11 2016209 2018455 + MGP_AJ_P0027832 Rasl10a protein_coding protein_coding MGP_AJ_T0027833.1 MGP_AJ_G0017968.1 mouse_genomes_project 11 2017025 2018132 + Rasl10a protein_coding processed_transcript MGP_AJ_T0030194.1 MGP_AJ_G0018559.1 mouse_genomes_project 11 68147201 68154220 - MGP_AJ_P0030194 Alox12e protein_coding protein_coding MGP_AJ_T0030195.1 MGP_AJ_G0018559.1 mouse_genomes_project 11 68151562 68153169 - Alox12e protein_coding retained_intron MGP_AJ_T0030196.1 MGP_AJ_G0018559.1 mouse_genomes_project 11 68152585 68153446 - Alox12e protein_coding retained_intron MGP_AJ_T0030197.1 MGP_AJ_G0018559.1 mouse_genomes_project 11 68152646 68154040 - Alox12e protein_coding retained_intron MGP_AJ_T0027762.1 MGP_AJ_G0017951.1 mouse_genomes_project 11 1129840 1159479 + Tbc1d10a protein_coding processed_transcript MGP_AJ_T0027763.1 MGP_AJ_G0017951.1 mouse_genomes_project 11 1129840 1160099 + MGP_AJ_P0027763 Tbc1d10a protein_coding protein_coding MGP_AJ_T0027764.1 MGP_AJ_G0017951.1 mouse_genomes_project 11 1129873 1160096 + MGP_AJ_P0027764 Tbc1d10a protein_coding protein_coding MGP_AJ_T0027765.1 MGP_AJ_G0017951.1 mouse_genomes_project 11 1150005 1154583 + Tbc1d10a protein_coding processed_transcript MGP_AJ_T0027766.1 MGP_AJ_G0017951.1 mouse_genomes_project 11 1156903 1158193 + Tbc1d10a protein_coding processed_transcript MGP_AJ_T0027767.1 MGP_AJ_G0017951.1 mouse_genomes_project 11 1157067 1158449 + Tbc1d10a protein_coding processed_transcript MGP_AJ_T0027966.1 MGP_AJ_G0017998.1 mouse_genomes_project 11 3483516 3497921 - MGP_AJ_P0027966 Myo1g protein_coding protein_coding MGP_AJ_T0027967.1 MGP_AJ_G0017998.1 mouse_genomes_project 11 3483642 3497860 - MGP_AJ_P0027967 Myo1g protein_coding nonsense_mediated_decay MGP_AJ_T0027968.1 MGP_AJ_G0017998.1 mouse_genomes_project 11 3484837 3485654 - Myo1g protein_coding retained_intron MGP_AJ_T0027969.1 MGP_AJ_G0017998.1 mouse_genomes_project 11 3489932 3497921 - Myo1g protein_coding retained_intron MGP_AJ_T0027970.1 MGP_AJ_G0017998.1 mouse_genomes_project 11 3491471 3492469 - Myo1g protein_coding retained_intron MGP_AJ_T0027971.1 MGP_AJ_G0017998.1 mouse_genomes_project 11 3494960 3497928 - MGP_AJ_P0027971 Myo1g protein_coding nonsense_mediated_decay MGP_AJ_T0027972.1 MGP_AJ_G0017998.1 mouse_genomes_project 11 3496009 3496467 - MGP_AJ_P0027972 Myo1g protein_coding protein_coding MGP_AJ_T0033059.1 MGP_AJ_G0019281.1 mouse_genomes_project 11 105412399 105421337 - MGP_AJ_P0033059 Ddx5 protein_coding protein_coding MGP_AJ_T0033060.1 MGP_AJ_G0019281.1 mouse_genomes_project 11 105413592 105421299 - MGP_AJ_P0033060 Ddx5 protein_coding nonsense_mediated_decay MGP_AJ_T0033061.1 MGP_AJ_G0019281.1 mouse_genomes_project 11 105414967 105416470 - Ddx5 protein_coding processed_transcript MGP_AJ_T0033062.1 MGP_AJ_G0019281.1 mouse_genomes_project 11 105416122 105421272 - Ddx5 protein_coding processed_transcript MGP_AJ_T0033063.1 MGP_AJ_G0019281.1 mouse_genomes_project 11 105416551 105417865 - Ddx5 protein_coding retained_intron MGP_AJ_T0033064.1 MGP_AJ_G0019281.1 mouse_genomes_project 11 105417961 105418869 - Ddx5 protein_coding processed_transcript MGP_AJ_T0033065.1 MGP_AJ_G0019281.1 mouse_genomes_project 11 105418314 105421990 - MGP_AJ_P0033065 Ddx5 protein_coding protein_coding MGP_AJ_T0033066.1 MGP_AJ_G0019281.1 mouse_genomes_project 11 105418889 105421688 - MGP_AJ_P0033066 Ddx5 protein_coding protein_coding MGP_AJ_T0033358.1 MGP_AJ_G0019350.1 mouse_genomes_project 11 114138254 114150514 + MGP_AJ_P0033358 Otop3 protein_coding protein_coding MGP_AJ_T0033359.1 MGP_AJ_G0019350.1 mouse_genomes_project 11 114138257 114150513 + MGP_AJ_P0033359 Otop3 protein_coding protein_coding MGP_AJ_T0003258.1 MGP_AJ_G0003011.1 mouse_genomes_project 11 87131796 87155363 + Scpep1os antisense antisense MGP_AJ_T0009768.1 MGP_AJ_G0007890.1 mouse_genomes_project 11 116879426 116879507 + Mir6933 miRNA miRNA MGP_AJ_T0032882.1 MGP_AJ_G0019242.1 mouse_genomes_project 11 102807633 102905862 + MGP_AJ_P0032882 protein_coding protein_coding MGP_AJ_T0032883.1 MGP_AJ_G0019242.1 mouse_genomes_project 11 102807722 102869672 + protein_coding retained_intron MGP_AJ_T0032884.1 MGP_AJ_G0019242.1 mouse_genomes_project 11 102807727 102880822 + MGP_AJ_P0032884 protein_coding protein_coding MGP_AJ_T0032885.1 MGP_AJ_G0019242.1 mouse_genomes_project 11 102807758 102902209 + MGP_AJ_P0032885 protein_coding protein_coding MGP_AJ_T0032886.1 MGP_AJ_G0019242.1 mouse_genomes_project 11 102807816 102880906 + MGP_AJ_P0032886 protein_coding protein_coding MGP_AJ_T0032887.1 MGP_AJ_G0019242.1 mouse_genomes_project 11 102807822 102880882 + protein_coding processed_transcript MGP_AJ_T0032888.1 MGP_AJ_G0019242.1 mouse_genomes_project 11 102807824 102869279 + MGP_AJ_P0032888 protein_coding protein_coding MGP_AJ_T0032889.1 MGP_AJ_G0019242.1 mouse_genomes_project 11 102807827 102901993 + MGP_AJ_P0032889 protein_coding protein_coding MGP_AJ_T0032890.1 MGP_AJ_G0019242.1 mouse_genomes_project 11 102856134 102901961 + MGP_AJ_P0032890 protein_coding protein_coding MGP_AJ_T0032891.1 MGP_AJ_G0019242.1 mouse_genomes_project 11 102856134 102901961 + MGP_AJ_P0032891 protein_coding protein_coding MGP_AJ_T0032892.1 MGP_AJ_G0019242.1 mouse_genomes_project 11 102892207 102902015 + protein_coding processed_transcript MGP_AJ_T0032893.1 MGP_AJ_G0019242.1 mouse_genomes_project 11 102896114 102901984 + protein_coding processed_transcript MGP_AJ_T0003241.1 MGP_AJ_G0002999.1 mouse_genomes_project 11 79622908 79629000 + Gm11418 antisense antisense MGP_AJ_T0029244.1 MGP_AJ_G0018338.1 mouse_genomes_project 11 56181439 56182462 + MGP_AJ_P0029244 protein_coding protein_coding MGP_AJ_T0099328.1 MGP_AJ_G0037294.1 mouse_genomes_project 11 51920538 51920646 + Gm24198 snRNA snRNA MGP_AJ_T0028922.1 MGP_AJ_G0018241.1 mouse_genomes_project 11 48980406 48988283 - MGP_AJ_P0028922 N4bp3 protein_coding protein_coding MGP_AJ_T0028923.1 MGP_AJ_G0018241.1 mouse_genomes_project 11 48982897 48988278 - MGP_AJ_P0028923 N4bp3 protein_coding protein_coding MGP_AJ_T0028924.1 MGP_AJ_G0018241.1 mouse_genomes_project 11 48982962 48988261 - MGP_AJ_P0028924 N4bp3 protein_coding protein_coding MGP_AJ_T0102257.1 MGP_AJ_G0040000.1 mouse_genomes_project 11 98061152 98061275 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0003316.1 MGP_AJ_G0003057.1 mouse_genomes_project 11 104684283 104685459 - Taco1os antisense antisense MGP_AJ_T0028882.1 MGP_AJ_G0018232.1 mouse_genomes_project 11 48338348 48339171 + MGP_AJ_P0028882 Olfr1375 protein_coding protein_coding MGP_AJ_T0011294.1 MGP_AJ_G0009416.1 mouse_genomes_project 11 572058 572205 - Gm27640 misc_RNA misc_RNA MGP_AJ_T0029897.1 MGP_AJ_G0018494.1 mouse_genomes_project 11 67097969 67098973 - Cntrob protein_coding retained_intron MGP_AJ_T0029898.1 MGP_AJ_G0018494.1 mouse_genomes_project 11 67097969 67122618 - MGP_AJ_P0029898 Cntrob protein_coding protein_coding MGP_AJ_T0029899.1 MGP_AJ_G0018494.1 mouse_genomes_project 11 67097969 67122618 - MGP_AJ_P0029899 Cntrob protein_coding nonsense_mediated_decay MGP_AJ_T0029900.1 MGP_AJ_G0018494.1 mouse_genomes_project 11 67098022 67118152 - MGP_AJ_P0029900 Cntrob protein_coding protein_coding MGP_AJ_T0029901.1 MGP_AJ_G0018494.1 mouse_genomes_project 11 67098183 67101625 - MGP_AJ_P0029901 Cntrob protein_coding protein_coding MGP_AJ_T0029902.1 MGP_AJ_G0018494.1 mouse_genomes_project 11 67099999 67103442 - Cntrob protein_coding retained_intron MGP_AJ_T0029903.1 MGP_AJ_G0018494.1 mouse_genomes_project 11 67106871 67107898 - MGP_AJ_P0029903 Cntrob protein_coding protein_coding MGP_AJ_T0029904.1 MGP_AJ_G0018494.1 mouse_genomes_project 11 67108499 67113584 - Cntrob protein_coding retained_intron MGP_AJ_T0029905.1 MGP_AJ_G0018494.1 mouse_genomes_project 11 67113222 67118917 - Cntrob protein_coding retained_intron MGP_AJ_T0029906.1 MGP_AJ_G0018494.1 mouse_genomes_project 11 67113638 67118170 - Cntrob protein_coding retained_intron MGP_AJ_T0031236.1 MGP_AJ_G0018820.1 mouse_genomes_project 11 81683404 81689121 - MGP_AJ_P0031236 Ccl9 protein_coding protein_coding MGP_AJ_T0031237.1 MGP_AJ_G0018820.1 mouse_genomes_project 11 81685802 81687627 - Ccl9 protein_coding processed_transcript MGP_AJ_T0100621.1 MGP_AJ_G0038587.1 mouse_genomes_project 11 91132121 91132264 + Gm25113 snoRNA snoRNA MGP_AJ_T0032289.1 MGP_AJ_G0019121.1 mouse_genomes_project 11 98856249 98862639 - MGP_AJ_P0032289 P3h4 protein_coding protein_coding MGP_AJ_T0032290.1 MGP_AJ_G0019121.1 mouse_genomes_project 11 98857159 98859671 - MGP_AJ_P0032290 P3h4 protein_coding protein_coding MGP_AJ_T0030017.1 MGP_AJ_G0018522.1 mouse_genomes_project 11 67605009 67616910 - MGP_AJ_P0030017 Chrnb1 protein_coding protein_coding MGP_AJ_T0030018.1 MGP_AJ_G0018522.1 mouse_genomes_project 11 67613670 67615237 - Chrnb1 protein_coding retained_intron MGP_AJ_T0030019.1 MGP_AJ_G0018522.1 mouse_genomes_project 11 67613745 67614781 - Chrnb1 protein_coding retained_intron MGP_AJ_T0030020.1 MGP_AJ_G0018522.1 mouse_genomes_project 11 67614480 67616872 - Chrnb1 protein_coding processed_transcript MGP_AJ_T0012741.1 MGP_AJ_G0010836.1 mouse_genomes_project 11 98138315 98138483 - processed_pseudogene processed_pseudogene MGP_AJ_T0102246.1 MGP_AJ_G0039989.1 mouse_genomes_project 11 81360310 81367350 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0012726.1 MGP_AJ_G0010821.1 mouse_genomes_project 11 93729738 93729914 - processed_pseudogene processed_pseudogene MGP_AJ_T0017238.1 MGP_AJ_G0015172.1 mouse_genomes_project 11 95154915 95165865 - Gm11523 processed_transcript lincRNA MGP_AJ_T0017239.1 MGP_AJ_G0015172.1 mouse_genomes_project 11 95155208 95165871 - Gm11523 processed_transcript lincRNA MGP_AJ_T0017240.1 MGP_AJ_G0015172.1 mouse_genomes_project 11 95155337 95165851 - Gm11523 processed_transcript antisense MGP_AJ_T0031196.1 MGP_AJ_G0018807.1 mouse_genomes_project 11 81203103 81208925 + MGP_AJ_P0031196 Slfn1 protein_coding protein_coding MGP_AJ_T0031663.1 MGP_AJ_G0018924.1 mouse_genomes_project 11 92638038 92706855 - MGP_AJ_P0031663 Cacna1g protein_coding protein_coding MGP_AJ_T0031664.1 MGP_AJ_G0018924.1 mouse_genomes_project 11 92638038 92706855 - MGP_AJ_P0031664 Cacna1g protein_coding protein_coding MGP_AJ_T0031665.1 MGP_AJ_G0018924.1 mouse_genomes_project 11 92638038 92706855 - MGP_AJ_P0031665 Cacna1g protein_coding protein_coding MGP_AJ_T0031666.1 MGP_AJ_G0018924.1 mouse_genomes_project 11 92638038 92706855 - MGP_AJ_P0031666 Cacna1g protein_coding protein_coding MGP_AJ_T0031667.1 MGP_AJ_G0018924.1 mouse_genomes_project 11 92638038 92706855 - MGP_AJ_P0031667 Cacna1g protein_coding protein_coding MGP_AJ_T0031668.1 MGP_AJ_G0018924.1 mouse_genomes_project 11 92638038 92706855 - MGP_AJ_P0031668 Cacna1g protein_coding protein_coding MGP_AJ_T0031669.1 MGP_AJ_G0018924.1 mouse_genomes_project 11 92638038 92706855 - MGP_AJ_P0031669 Cacna1g protein_coding protein_coding MGP_AJ_T0031670.1 MGP_AJ_G0018924.1 mouse_genomes_project 11 92638038 92706855 - MGP_AJ_P0031670 Cacna1g protein_coding protein_coding MGP_AJ_T0031671.1 MGP_AJ_G0018924.1 mouse_genomes_project 11 92638038 92706855 - MGP_AJ_P0031671 Cacna1g protein_coding protein_coding MGP_AJ_T0031672.1 MGP_AJ_G0018924.1 mouse_genomes_project 11 92638053 92706953 - MGP_AJ_P0031672 Cacna1g protein_coding protein_coding MGP_AJ_T0031673.1 MGP_AJ_G0018924.1 mouse_genomes_project 11 92638282 92706855 - MGP_AJ_P0031673 Cacna1g protein_coding protein_coding MGP_AJ_T0031674.1 MGP_AJ_G0018924.1 mouse_genomes_project 11 92639499 92641336 - Cacna1g protein_coding processed_transcript MGP_AJ_T0031675.1 MGP_AJ_G0018924.1 mouse_genomes_project 11 92641137 92646844 - Cacna1g protein_coding processed_transcript MGP_AJ_T0031676.1 MGP_AJ_G0018924.1 mouse_genomes_project 11 92648476 92653969 - Cacna1g protein_coding processed_transcript MGP_AJ_T0031677.1 MGP_AJ_G0018924.1 mouse_genomes_project 11 92654832 92656062 - Cacna1g protein_coding processed_transcript MGP_AJ_T0031678.1 MGP_AJ_G0018924.1 mouse_genomes_project 11 92656563 92706396 - Cacna1g protein_coding processed_transcript MGP_AJ_T0006248.1 MGP_AJ_G0005219.1 mouse_genomes_project 11 57698261 57701348 - 4930412M03Rik lincRNA lincRNA MGP_AJ_T0012784.1 MGP_AJ_G0010879.1 mouse_genomes_project 11 115227646 115228103 + processed_pseudogene processed_pseudogene MGP_AJ_T0033387.1 MGP_AJ_G0019355.1 mouse_genomes_project 11 114227162 114237707 + MGP_AJ_P0033387 Kctd2 protein_coding protein_coding MGP_AJ_T0033388.1 MGP_AJ_G0019355.1 mouse_genomes_project 11 114227519 114238639 + MGP_AJ_P0033388 Kctd2 protein_coding protein_coding MGP_AJ_T0033389.1 MGP_AJ_G0019355.1 mouse_genomes_project 11 114227551 114237406 + MGP_AJ_P0033389 Kctd2 protein_coding protein_coding MGP_AJ_T0033390.1 MGP_AJ_G0019355.1 mouse_genomes_project 11 114227681 114229795 + Kctd2 protein_coding retained_intron MGP_AJ_T0033391.1 MGP_AJ_G0019355.1 mouse_genomes_project 11 114236717 114237566 + Kctd2 protein_coding processed_transcript MGP_AJ_T0012501.1 MGP_AJ_G0010596.1 mouse_genomes_project 11 15225378 15227444 - processed_pseudogene processed_pseudogene MGP_AJ_T0029162.1 MGP_AJ_G0018302.1 mouse_genomes_project 11 53003278 53100891 - MGP_AJ_P0029162 Glra1 protein_coding protein_coding MGP_AJ_T0029163.1 MGP_AJ_G0018302.1 mouse_genomes_project 11 53003278 53100426 - MGP_AJ_P0029163 Glra1 protein_coding protein_coding MGP_AJ_T0029164.1 MGP_AJ_G0018302.1 mouse_genomes_project 11 53003278 53100514 - MGP_AJ_P0029164 Glra1 protein_coding protein_coding MGP_AJ_T0098900.1 MGP_AJ_G0036883.1 mouse_genomes_project 11 78537070 78538762 - C030013C21Rik sense_intronic sense_intronic MGP_AJ_T0012486.1 MGP_AJ_G0010581.1 mouse_genomes_project 11 11089387 11089766 + processed_pseudogene processed_pseudogene MGP_AJ_T0031241.1 MGP_AJ_G0018822.1 mouse_genomes_project 11 81757570 81758146 - MGP_AJ_P0031241 Rpl9-ps1 protein_coding protein_coding MGP_AJ_T0029748.1 MGP_AJ_G0018461.1 mouse_genomes_project 11 65431142 65529626 - MGP_AJ_P0029748 Glp2r protein_coding protein_coding MGP_AJ_T0029751.1 MGP_AJ_G0018461.1 mouse_genomes_project 11 65477376 65542331 - MGP_AJ_P0029751 Glp2r protein_coding protein_coding MGP_AJ_T0032112.1 MGP_AJ_G0019037.1 mouse_genomes_project 11 97056859 97059225 + MGP_AJ_P0032112 Csf3 protein_coding protein_coding MGP_AJ_T0031832.1 MGP_AJ_G0018970.1 mouse_genomes_project 11 94566802 94570211 + MGP_AJ_P0031832 Hoxb8 protein_coding protein_coding MGP_AJ_T0031833.1 MGP_AJ_G0018970.1 mouse_genomes_project 11 94567453 94569211 + MGP_AJ_P0031833 Hoxb8 protein_coding protein_coding MGP_AJ_T0031834.1 MGP_AJ_G0018970.1 mouse_genomes_project 11 94567622 94569589 + MGP_AJ_P0031834 Hoxb8 protein_coding protein_coding MGP_AJ_T0006189.1 MGP_AJ_G0005168.1 mouse_genomes_project 11 19651002 19654686 - Gm12055 lincRNA lincRNA MGP_AJ_T0100632.1 MGP_AJ_G0038598.1 mouse_genomes_project 11 105127790 105127923 + Gm22711 snoRNA snoRNA MGP_AJ_T0029011.1 MGP_AJ_G0018266.1 mouse_genomes_project 11 50881562 50882478 + MGP_AJ_P0029011 Gm9945 protein_coding protein_coding MGP_AJ_T0031435.1 MGP_AJ_G0018870.1 mouse_genomes_project 11 85549596 85577636 - MGP_AJ_P0031435 Rad51c protein_coding protein_coding MGP_AJ_T0031436.1 MGP_AJ_G0018870.1 mouse_genomes_project 11 85551542 85577619 - MGP_AJ_P0031436 Rad51c protein_coding nonsense_mediated_decay MGP_AJ_T0031437.1 MGP_AJ_G0018870.1 mouse_genomes_project 11 85552048 85578067 - MGP_AJ_P0031437 Rad51c protein_coding protein_coding MGP_AJ_T0031438.1 MGP_AJ_G0018870.1 mouse_genomes_project 11 85552335 85577535 - MGP_AJ_P0031438 Rad51c protein_coding nonsense_mediated_decay MGP_AJ_T0029334.1 MGP_AJ_G0018375.1 mouse_genomes_project 11 57367226 57386575 - MGP_AJ_P0029334 Flcn protein_coding protein_coding MGP_AJ_T0029335.1 MGP_AJ_G0018375.1 mouse_genomes_project 11 57367275 57386483 - Flcn protein_coding retained_intron MGP_AJ_T0029336.1 MGP_AJ_G0018375.1 mouse_genomes_project 11 57367608 57386147 - MGP_AJ_P0029336 Flcn protein_coding protein_coding MGP_AJ_T0029337.1 MGP_AJ_G0018375.1 mouse_genomes_project 11 57379473 57386160 - Flcn protein_coding processed_transcript MGP_AJ_T0029338.1 MGP_AJ_G0018375.1 mouse_genomes_project 11 57380261 57386553 - MGP_AJ_P0029338 Flcn protein_coding protein_coding MGP_AJ_T0029339.1 MGP_AJ_G0018375.1 mouse_genomes_project 11 57385584 57386270 - Flcn protein_coding retained_intron MGP_AJ_T0030352.1 MGP_AJ_G0018588.1 mouse_genomes_project 11 68833839 68839050 - MGP_AJ_P0030352 C1qbp protein_coding protein_coding MGP_AJ_T0030353.1 MGP_AJ_G0018588.1 mouse_genomes_project 11 68833851 68834875 - C1qbp protein_coding retained_intron MGP_AJ_T0030354.1 MGP_AJ_G0018588.1 mouse_genomes_project 11 68837022 68839031 - C1qbp protein_coding retained_intron MGP_AJ_T0012727.1 MGP_AJ_G0010822.1 mouse_genomes_project 11 94033266 94033441 + processed_pseudogene processed_pseudogene MGP_AJ_T0028658.1 MGP_AJ_G0018166.1 mouse_genomes_project 11 43613376 43617308 + MGP_AJ_P0028658 Med7 protein_coding protein_coding MGP_AJ_T0028659.1 MGP_AJ_G0018166.1 mouse_genomes_project 11 43613400 43617214 + MGP_AJ_P0028659 Med7 protein_coding protein_coding MGP_AJ_T0028660.1 MGP_AJ_G0018166.1 mouse_genomes_project 11 43613403 43617977 + MGP_AJ_P0028660 Med7 protein_coding protein_coding MGP_AJ_T0028661.1 MGP_AJ_G0018166.1 mouse_genomes_project 11 43613412 43619171 + MGP_AJ_P0028661 Med7 protein_coding protein_coding MGP_AJ_T0028662.1 MGP_AJ_G0018166.1 mouse_genomes_project 11 43613422 43617550 + MGP_AJ_P0028662 Med7 protein_coding protein_coding MGP_AJ_T0028663.1 MGP_AJ_G0018166.1 mouse_genomes_project 11 43613425 43619171 + MGP_AJ_P0028663 Med7 protein_coding protein_coding MGP_AJ_T0028664.1 MGP_AJ_G0018166.1 mouse_genomes_project 11 43613429 43617500 + MGP_AJ_P0028664 Med7 protein_coding protein_coding MGP_AJ_T0028665.1 MGP_AJ_G0018166.1 mouse_genomes_project 11 43613456 43616394 + Med7 protein_coding processed_transcript MGP_AJ_T0028666.1 MGP_AJ_G0018166.1 mouse_genomes_project 11 43616103 43617428 + MGP_AJ_P0028666 Med7 protein_coding protein_coding MGP_AJ_T0031219.1 MGP_AJ_G0018814.1 mouse_genomes_project 11 81532010 81539500 - MGP_AJ_P0031219 Gas2l2 protein_coding nonsense_mediated_decay MGP_AJ_T0031220.1 MGP_AJ_G0018814.1 mouse_genomes_project 11 81532010 81539500 - MGP_AJ_P0031220 Gas2l2 protein_coding protein_coding MGP_AJ_T0003200.1 MGP_AJ_G0002965.1 mouse_genomes_project 11 60668634 60671147 - Tvp23bos antisense antisense MGP_AJ_T0031962.1 MGP_AJ_G0019001.1 mouse_genomes_project 11 95826684 95892725 - MGP_AJ_P0031962 Srcin1 protein_coding protein_coding MGP_AJ_T0031963.1 MGP_AJ_G0019001.1 mouse_genomes_project 11 95830202 95891563 - MGP_AJ_P0031963 Srcin1 protein_coding protein_coding MGP_AJ_T0031964.1 MGP_AJ_G0019001.1 mouse_genomes_project 11 95830276 95891429 - MGP_AJ_P0031964 Srcin1 protein_coding unknown_likely_coding MGP_AJ_T0031965.1 MGP_AJ_G0019001.1 mouse_genomes_project 11 95834978 95891454 - MGP_AJ_P0031965 Srcin1 protein_coding protein_coding MGP_AJ_T0031966.1 MGP_AJ_G0019001.1 mouse_genomes_project 11 95852137 95891439 - MGP_AJ_P0031966 Srcin1 protein_coding protein_coding MGP_AJ_T0031967.1 MGP_AJ_G0019001.1 mouse_genomes_project 11 95869432 95892738 - Srcin1 protein_coding processed_transcript MGP_AJ_T0028456.1 MGP_AJ_G0018109.1 mouse_genomes_project 11 29583621 29588450 - MGP_AJ_P0028456 Efcab9 protein_coding protein_coding MGP_AJ_T0028457.1 MGP_AJ_G0018109.1 mouse_genomes_project 11 29584210 29592885 - MGP_AJ_P0028457 Efcab9 protein_coding protein_coding MGP_AJ_T0031365.1 MGP_AJ_G0018852.1 mouse_genomes_project 11 84059136 84089609 + MGP_AJ_P0031365 Tbx4 protein_coding protein_coding MGP_AJ_T0031366.1 MGP_AJ_G0018852.1 mouse_genomes_project 11 84062776 84089611 + MGP_AJ_P0031366 Tbx4 protein_coding protein_coding MGP_AJ_T0031367.1 MGP_AJ_G0018852.1 mouse_genomes_project 11 84069526 84089609 + MGP_AJ_P0031367 Tbx4 protein_coding protein_coding MGP_AJ_T0034226.1 MGP_AJ_G0019517.1 mouse_genomes_project 11 120358545 120522114 + MGP_AJ_P0034226 Tbcd protein_coding protein_coding MGP_AJ_T0034227.1 MGP_AJ_G0019517.1 mouse_genomes_project 11 120394810 120403436 + MGP_AJ_P0034227 Tbcd protein_coding protein_coding MGP_AJ_T0034228.1 MGP_AJ_G0019517.1 mouse_genomes_project 11 120406420 120482851 + MGP_AJ_P0034228 Tbcd protein_coding nonsense_mediated_decay MGP_AJ_T0034230.1 MGP_AJ_G0019517.1 mouse_genomes_project 11 120450605 120497041 + Tbcd protein_coding processed_transcript MGP_AJ_T0034231.1 MGP_AJ_G0019517.1 mouse_genomes_project 11 120456292 120497018 + Tbcd protein_coding retained_intron MGP_AJ_T0034232.1 MGP_AJ_G0019517.1 mouse_genomes_project 11 120504950 120522113 + Tbcd protein_coding retained_intron MGP_AJ_T0034233.1 MGP_AJ_G0019517.1 mouse_genomes_project 11 120508253 120522113 + Tbcd protein_coding processed_transcript MGP_AJ_T0034234.1 MGP_AJ_G0019517.1 mouse_genomes_project 11 120508339 120522113 + Tbcd protein_coding processed_transcript MGP_AJ_T0031906.1 MGP_AJ_G0018988.1 mouse_genomes_project 11 95338758 95342777 + MGP_AJ_P0031906 Scrn2 protein_coding protein_coding MGP_AJ_T0031907.1 MGP_AJ_G0018988.1 mouse_genomes_project 11 95338772 95340026 + Scrn2 protein_coding retained_intron MGP_AJ_T0031908.1 MGP_AJ_G0018988.1 mouse_genomes_project 11 95338821 95342769 + Scrn2 protein_coding retained_intron MGP_AJ_T0031909.1 MGP_AJ_G0018988.1 mouse_genomes_project 11 95338954 95341096 + MGP_AJ_P0031909 Scrn2 protein_coding protein_coding MGP_AJ_T0028118.1 MGP_AJ_G0018034.1 mouse_genomes_project 11 15761455 15902317 - MGP_AJ_P0028118 Meis1 protein_coding protein_coding MGP_AJ_T0028119.1 MGP_AJ_G0018034.1 mouse_genomes_project 11 15762066 15902301 - MGP_AJ_P0028119 Meis1 protein_coding protein_coding MGP_AJ_T0028120.1 MGP_AJ_G0018034.1 mouse_genomes_project 11 15762066 15902046 - MGP_AJ_P0028120 Meis1 protein_coding nonsense_mediated_decay MGP_AJ_T0028121.1 MGP_AJ_G0018034.1 mouse_genomes_project 11 15762305 15895336 - Meis1 protein_coding processed_transcript MGP_AJ_T0028122.1 MGP_AJ_G0018034.1 mouse_genomes_project 11 15763345 15899624 - MGP_AJ_P0028122 Meis1 protein_coding nonsense_mediated_decay MGP_AJ_T0028123.1 MGP_AJ_G0018034.1 mouse_genomes_project 11 15763403 15901566 - MGP_AJ_P0028123 Meis1 protein_coding protein_coding MGP_AJ_T0028124.1 MGP_AJ_G0018034.1 mouse_genomes_project 11 15870122 15902254 - Meis1 protein_coding retained_intron MGP_AJ_T0028125.1 MGP_AJ_G0018034.1 mouse_genomes_project 11 15893111 15902254 - Meis1 protein_coding retained_intron MGP_AJ_T0009749.1 MGP_AJ_G0007871.1 mouse_genomes_project 11 99823709 99823805 - Gm25593 miRNA miRNA MGP_AJ_T0100596.1 MGP_AJ_G0038562.1 mouse_genomes_project 11 60335896 60335968 + Snord49b snoRNA snoRNA MGP_AJ_T0031010.1 MGP_AJ_G0018754.1 mouse_genomes_project 11 76516332 76524516 - MGP_AJ_P0031010 Tmem97 protein_coding protein_coding MGP_AJ_T0028455.1 MGP_AJ_G0018108.1 mouse_genomes_project 11 29514723 29577558 + MGP_AJ_P0028455 Ubtd2 protein_coding protein_coding MGP_AJ_T0033724.1 MGP_AJ_G0019414.1 mouse_genomes_project 11 116042647 116212045 + MGP_AJ_P0033724 Sept9 protein_coding protein_coding MGP_AJ_T0033725.1 MGP_AJ_G0019414.1 mouse_genomes_project 11 116078285 116212033 + MGP_AJ_P0033725 Sept9 protein_coding protein_coding MGP_AJ_T0033726.1 MGP_AJ_G0019414.1 mouse_genomes_project 11 116112923 116212040 + MGP_AJ_P0033726 Sept9 protein_coding protein_coding MGP_AJ_T0033727.1 MGP_AJ_G0019414.1 mouse_genomes_project 11 116155993 116201929 + MGP_AJ_P0033727 Sept9 protein_coding protein_coding MGP_AJ_T0033728.1 MGP_AJ_G0019414.1 mouse_genomes_project 11 116174372 116206093 + MGP_AJ_P0033728 Sept9 protein_coding protein_coding MGP_AJ_T0033729.1 MGP_AJ_G0019414.1 mouse_genomes_project 11 116181074 116211346 + Sept9 protein_coding retained_intron MGP_AJ_T0033730.1 MGP_AJ_G0019414.1 mouse_genomes_project 11 116202896 116206716 + Sept9 protein_coding retained_intron MGP_AJ_T0033731.1 MGP_AJ_G0019414.1 mouse_genomes_project 11 116209076 116210583 + Sept9 protein_coding retained_intron MGP_AJ_T0006217.1 MGP_AJ_G0005190.1 mouse_genomes_project 11 30293127 30310548 + Gm12116 lincRNA lincRNA MGP_AJ_T0031754.1 MGP_AJ_G0018946.1 mouse_genomes_project 11 93400517 93406329 - MGP_AJ_P0031754 Dlx4 protein_coding protein_coding MGP_AJ_T0031755.1 MGP_AJ_G0018946.1 mouse_genomes_project 11 93403692 93405867 - Dlx4 protein_coding processed_transcript MGP_AJ_T0031242.1 MGP_AJ_G0018823.1 mouse_genomes_project 11 81760394 81761906 - MGP_AJ_P0031242 Ccl3 protein_coding protein_coding MGP_AJ_T0009744.1 MGP_AJ_G0007866.1 mouse_genomes_project 11 96585591 96585669 + Gm27399 miRNA miRNA MGP_AJ_T0031556.1 MGP_AJ_G0018898.1 mouse_genomes_project 11 87261613 87293419 - MGP_AJ_P0031556 Dgke protein_coding protein_coding MGP_AJ_T0031557.1 MGP_AJ_G0018898.1 mouse_genomes_project 11 87264010 87287162 - MGP_AJ_P0031557 Dgke protein_coding protein_coding MGP_AJ_T0031558.1 MGP_AJ_G0018898.1 mouse_genomes_project 11 87265655 87287162 - MGP_AJ_P0031558 Dgke protein_coding nonsense_mediated_decay MGP_AJ_T0028755.1 MGP_AJ_G0018194.1 mouse_genomes_project 11 46526045 46527971 + MGP_AJ_P0028755 protein_coding protein_coding MGP_AJ_T0012677.1 MGP_AJ_G0010772.1 mouse_genomes_project 11 72647199 72647367 - processed_pseudogene processed_pseudogene MGP_AJ_T0029966.1 MGP_AJ_G0018512.1 mouse_genomes_project 11 67472698 67478657 - MGP_AJ_P0029966 Mpdu1 protein_coding protein_coding MGP_AJ_T0029967.1 MGP_AJ_G0018512.1 mouse_genomes_project 11 67472962 67478578 - MGP_AJ_P0029967 Mpdu1 protein_coding protein_coding MGP_AJ_T0029968.1 MGP_AJ_G0018512.1 mouse_genomes_project 11 67473028 67478601 - MGP_AJ_P0029968 Mpdu1 protein_coding nonsense_mediated_decay MGP_AJ_T0029969.1 MGP_AJ_G0018512.1 mouse_genomes_project 11 67473130 67474298 - Mpdu1 protein_coding retained_intron MGP_AJ_T0029970.1 MGP_AJ_G0018512.1 mouse_genomes_project 11 67473155 67478601 - MGP_AJ_P0029970 Mpdu1 protein_coding protein_coding MGP_AJ_T0029971.1 MGP_AJ_G0018512.1 mouse_genomes_project 11 67473163 67478532 - MGP_AJ_P0029971 Mpdu1 protein_coding nonsense_mediated_decay MGP_AJ_T0029972.1 MGP_AJ_G0018512.1 mouse_genomes_project 11 67473214 67474271 - Mpdu1 protein_coding retained_intron MGP_AJ_T0029973.1 MGP_AJ_G0018512.1 mouse_genomes_project 11 67473750 67478518 - Mpdu1 protein_coding retained_intron MGP_AJ_T0029974.1 MGP_AJ_G0018512.1 mouse_genomes_project 11 67474364 67478574 - Mpdu1 protein_coding retained_intron MGP_AJ_T0029975.1 MGP_AJ_G0018512.1 mouse_genomes_project 11 67474493 67475423 - Mpdu1 protein_coding retained_intron MGP_AJ_T0031953.1 MGP_AJ_G0018998.1 mouse_genomes_project 11 95675611 95713617 + MGP_AJ_P0031953 Socs7 protein_coding protein_coding MGP_AJ_T0031954.1 MGP_AJ_G0018998.1 mouse_genomes_project 11 95691619 95692850 + Socs7 protein_coding processed_transcript MGP_AJ_T0003217.1 MGP_AJ_G0002978.1 mouse_genomes_project 11 67091391 67092718 + Cntrobos antisense antisense MGP_AJ_T0029603.1 MGP_AJ_G0018423.1 mouse_genomes_project 11 60189421 60246810 + MGP_AJ_P0029603 Pigl protein_coding protein_coding MGP_AJ_T0029604.1 MGP_AJ_G0018423.1 mouse_genomes_project 11 60189569 60244631 + Pigl protein_coding processed_transcript MGP_AJ_T0029730.1 MGP_AJ_G0018457.1 mouse_genomes_project 11 65014932 65021971 + MGP_AJ_P0029730 protein_coding unknown_likely_coding MGP_AJ_T0012525.1 MGP_AJ_G0010620.1 mouse_genomes_project 11 18795232 18796176 - processed_pseudogene processed_pseudogene MGP_AJ_T0034019.1 MGP_AJ_G0019473.1 mouse_genomes_project 11 119392952 119397405 + MGP_AJ_P0034019 Mrpl12 protein_coding protein_coding MGP_AJ_T0034020.1 MGP_AJ_G0019473.1 mouse_genomes_project 11 119393366 119396797 + Mrpl12 protein_coding processed_transcript MGP_AJ_T0028477.1 MGP_AJ_G0018117.1 mouse_genomes_project 11 30363392 30364372 - Gm12117 protein_coding translated_processed_pseudogene MGP_AJ_T0028478.1 MGP_AJ_G0018117.1 mouse_genomes_project 11 30363513 30363969 - MGP_AJ_P0028478 Gm12117 protein_coding protein_coding MGP_AJ_T0028667.1 MGP_AJ_G0018167.1 mouse_genomes_project 11 43630810 43657761 + MGP_AJ_P0028667 Havcr2 protein_coding protein_coding MGP_AJ_T0028668.1 MGP_AJ_G0018167.1 mouse_genomes_project 11 43630844 43657752 + MGP_AJ_P0028668 Havcr2 protein_coding protein_coding MGP_AJ_T0027820.1 MGP_AJ_G0017965.1 mouse_genomes_project 11 1892424 1901680 - MGP_AJ_P0027820 Nefh protein_coding protein_coding MGP_AJ_T0030795.1 MGP_AJ_G0018710.1 mouse_genomes_project 11 75026603 75157703 - MGP_AJ_P0030795 Efcab5 protein_coding unknown_likely_coding MGP_AJ_T0030796.1 MGP_AJ_G0018710.1 mouse_genomes_project 11 75029777 75133131 - MGP_AJ_P0030796 Efcab5 protein_coding protein_coding MGP_AJ_T0030797.1 MGP_AJ_G0018710.1 mouse_genomes_project 11 75029806 75044099 - Efcab5 protein_coding retained_intron MGP_AJ_T0030798.1 MGP_AJ_G0018710.1 mouse_genomes_project 11 75030047 75094452 - MGP_AJ_P0030798 Efcab5 protein_coding protein_coding MGP_AJ_T0030799.1 MGP_AJ_G0018710.1 mouse_genomes_project 11 75043756 75079454 - Efcab5 protein_coding retained_intron MGP_AJ_T0030800.1 MGP_AJ_G0018710.1 mouse_genomes_project 11 75094065 75111598 - Efcab5 protein_coding processed_transcript MGP_AJ_T0012498.1 MGP_AJ_G0010593.1 mouse_genomes_project 11 14200394 14201360 - processed_pseudogene processed_pseudogene MGP_AJ_T0027683.1 MGP_AJ_G0017933.1 mouse_genomes_project 11 432271 434936 + Selm protein_coding processed_transcript MGP_AJ_T0027684.1 MGP_AJ_G0017933.1 mouse_genomes_project 11 432289 434718 + Selm protein_coding processed_transcript MGP_AJ_T0027685.1 MGP_AJ_G0017933.1 mouse_genomes_project 11 432454 434939 + MGP_AJ_P0027685 Selm protein_coding protein_coding MGP_AJ_T0003110.1 MGP_AJ_G0002890.1 mouse_genomes_project 11 101020 102884 - antisense antisense MGP_AJ_T0031512.1 MGP_AJ_G0018887.1 mouse_genomes_project 11 86252049 86258427 + MGP_AJ_P0031512 Srsf1 protein_coding protein_coding MGP_AJ_T0031513.1 MGP_AJ_G0018887.1 mouse_genomes_project 11 86252395 86256168 + MGP_AJ_P0031513 Srsf1 protein_coding protein_coding MGP_AJ_T0031514.1 MGP_AJ_G0018887.1 mouse_genomes_project 11 86252402 86253506 + Srsf1 protein_coding retained_intron MGP_AJ_T0031515.1 MGP_AJ_G0018887.1 mouse_genomes_project 11 86252482 86255089 + MGP_AJ_P0031515 Srsf1 protein_coding protein_coding MGP_AJ_T0031516.1 MGP_AJ_G0018887.1 mouse_genomes_project 11 86253246 86256150 + MGP_AJ_P0031516 Srsf1 protein_coding nonsense_mediated_decay MGP_AJ_T0031517.1 MGP_AJ_G0018887.1 mouse_genomes_project 11 86253268 86255801 + MGP_AJ_P0031517 Srsf1 protein_coding nonsense_mediated_decay MGP_AJ_T0031518.1 MGP_AJ_G0018887.1 mouse_genomes_project 11 86254091 86255730 + Srsf1 protein_coding retained_intron MGP_AJ_T0033815.1 MGP_AJ_G0019436.1 mouse_genomes_project 11 117315097 117330855 + MGP_AJ_P0033815 C1qtnf1 protein_coding protein_coding MGP_AJ_T0033816.1 MGP_AJ_G0019436.1 mouse_genomes_project 11 117315438 117337043 + MGP_AJ_P0033816 C1qtnf1 protein_coding protein_coding MGP_AJ_T0033817.1 MGP_AJ_G0019436.1 mouse_genomes_project 11 117320894 117337043 + MGP_AJ_P0033817 C1qtnf1 protein_coding protein_coding MGP_AJ_T0033818.1 MGP_AJ_G0019436.1 mouse_genomes_project 11 117330492 117330862 + MGP_AJ_P0033818 C1qtnf1 protein_coding protein_coding MGP_AJ_T0006292.1 MGP_AJ_G0005252.1 mouse_genomes_project 11 80024514 80027878 + Gm11419 lincRNA lincRNA MGP_AJ_T0012730.1 MGP_AJ_G0010825.1 mouse_genomes_project 11 95083509 95083896 - processed_pseudogene processed_pseudogene MGP_AJ_T0000851.1 MGP_AJ_G0000786.1 mouse_genomes_project 11 119490643 119491811 + TEC TEC MGP_AJ_T0029697.1 MGP_AJ_G0018448.1 mouse_genomes_project 11 63597972 63934966 - MGP_AJ_P0029697 Dnah9 protein_coding protein_coding MGP_AJ_T0029698.1 MGP_AJ_G0018448.1 mouse_genomes_project 11 63598093 63772340 - MGP_AJ_P0029698 Dnah9 protein_coding protein_coding MGP_AJ_T0029699.1 MGP_AJ_G0018448.1 mouse_genomes_project 11 63617373 63621844 - Dnah9 protein_coding retained_intron MGP_AJ_T0029700.1 MGP_AJ_G0018448.1 mouse_genomes_project 11 63671631 63694070 - MGP_AJ_P0029700 Dnah9 protein_coding protein_coding MGP_AJ_T0029701.1 MGP_AJ_G0018448.1 mouse_genomes_project 11 63886642 63934877 - MGP_AJ_P0029701 Dnah9 protein_coding protein_coding MGP_AJ_T0029702.1 MGP_AJ_G0018448.1 mouse_genomes_project 11 63925186 63934984 - Dnah9 protein_coding retained_intron MGP_AJ_T0003240.1 MGP_AJ_G0002998.1 mouse_genomes_project 11 79429428 79446875 + 4930527B05Rik antisense antisense MGP_AJ_T0098384.1 MGP_AJ_G0036368.1 mouse_genomes_project 11 41797187 41797643 + pseudogene pseudogene MGP_AJ_T0031197.1 MGP_AJ_G0018808.1 mouse_genomes_project 11 81283795 81299541 + MGP_AJ_P0031197 Slfn4 protein_coding protein_coding MGP_AJ_T0031198.1 MGP_AJ_G0018808.1 mouse_genomes_project 11 81283803 81299369 + MGP_AJ_P0031198 Slfn4 protein_coding protein_coding MGP_AJ_T0030532.1 MGP_AJ_G0018641.1 mouse_genomes_project 11 71722556 71726863 - MGP_AJ_P0030532 Olfr391-ps protein_coding protein_coding MGP_AJ_T0032209.1 MGP_AJ_G0019066.1 mouse_genomes_project 11 97926418 97927458 - MGP_AJ_P0032209 Krtap3-2 protein_coding protein_coding MGP_AJ_T0006224.1 MGP_AJ_G0005197.1 mouse_genomes_project 11 40253012 40263338 - Gm12145 lincRNA lincRNA MGP_AJ_T0028986.1 MGP_AJ_G0018258.1 mouse_genomes_project 11 50751085 50822707 + MGP_AJ_P0028986 Aff4 protein_coding protein_coding MGP_AJ_T0028987.1 MGP_AJ_G0018258.1 mouse_genomes_project 11 50768708 50772946 + MGP_AJ_P0028987 Aff4 protein_coding protein_coding MGP_AJ_T0028988.1 MGP_AJ_G0018258.1 mouse_genomes_project 11 50769265 50776364 + Aff4 protein_coding retained_intron MGP_AJ_T0028989.1 MGP_AJ_G0018258.1 mouse_genomes_project 11 50773005 50776136 + Aff4 protein_coding retained_intron MGP_AJ_T0028990.1 MGP_AJ_G0018258.1 mouse_genomes_project 11 50773391 50799027 + MGP_AJ_P0028990 Aff4 protein_coding protein_coding MGP_AJ_T0028991.1 MGP_AJ_G0018258.1 mouse_genomes_project 11 50773399 50800105 + Aff4 protein_coding processed_transcript MGP_AJ_T0028992.1 MGP_AJ_G0018258.1 mouse_genomes_project 11 50805026 50810022 + Aff4 protein_coding retained_intron MGP_AJ_T0028993.1 MGP_AJ_G0018258.1 mouse_genomes_project 11 50811570 50816710 + Aff4 protein_coding retained_intron MGP_AJ_T0031785.1 MGP_AJ_G0018953.1 mouse_genomes_project 11 93835506 93854458 - MGP_AJ_P0031785 Ngfr protein_coding protein_coding MGP_AJ_T0012489.1 MGP_AJ_G0010584.1 mouse_genomes_project 11 11633023 11633620 + processed_pseudogene processed_pseudogene MGP_AJ_T0031107.1 MGP_AJ_G0018780.1 mouse_genomes_project 11 78458644 78464470 + Psmd11 protein_coding retained_intron MGP_AJ_T0031108.1 MGP_AJ_G0018780.1 mouse_genomes_project 11 78458652 78501978 + MGP_AJ_P0031108 Psmd11 protein_coding protein_coding MGP_AJ_T0031109.1 MGP_AJ_G0018780.1 mouse_genomes_project 11 78458654 78503271 + MGP_AJ_P0031109 Psmd11 protein_coding protein_coding MGP_AJ_T0031110.1 MGP_AJ_G0018780.1 mouse_genomes_project 11 78458673 78502375 + Psmd11 protein_coding retained_intron MGP_AJ_T0031111.1 MGP_AJ_G0018780.1 mouse_genomes_project 11 78458675 78475780 + MGP_AJ_P0031111 Psmd11 protein_coding nonsense_mediated_decay MGP_AJ_T0031112.1 MGP_AJ_G0018780.1 mouse_genomes_project 11 78458694 78490458 + MGP_AJ_P0031112 Psmd11 protein_coding nonsense_mediated_decay MGP_AJ_T0031113.1 MGP_AJ_G0018780.1 mouse_genomes_project 11 78458715 78499223 + MGP_AJ_P0031113 Psmd11 protein_coding nonsense_mediated_decay MGP_AJ_T0031114.1 MGP_AJ_G0018780.1 mouse_genomes_project 11 78458715 78501608 + MGP_AJ_P0031114 Psmd11 protein_coding nonsense_mediated_decay MGP_AJ_T0031115.1 MGP_AJ_G0018780.1 mouse_genomes_project 11 78458715 78486013 + MGP_AJ_P0031115 Psmd11 protein_coding nonsense_mediated_decay MGP_AJ_T0031116.1 MGP_AJ_G0018780.1 mouse_genomes_project 11 78458719 78486194 + MGP_AJ_P0031116 Psmd11 protein_coding nonsense_mediated_decay MGP_AJ_T0031117.1 MGP_AJ_G0018780.1 mouse_genomes_project 11 78459985 78486198 + MGP_AJ_P0031117 Psmd11 protein_coding protein_coding MGP_AJ_T0031118.1 MGP_AJ_G0018780.1 mouse_genomes_project 11 78486138 78501944 + MGP_AJ_P0031118 Psmd11 protein_coding protein_coding MGP_AJ_T0031119.1 MGP_AJ_G0018780.1 mouse_genomes_project 11 78490475 78501783 + MGP_AJ_P0031119 Psmd11 protein_coding protein_coding MGP_AJ_T0031120.1 MGP_AJ_G0018780.1 mouse_genomes_project 11 78492367 78503271 + MGP_AJ_P0031120 Psmd11 protein_coding protein_coding MGP_AJ_T0031121.1 MGP_AJ_G0018780.1 mouse_genomes_project 11 78492371 78501710 + MGP_AJ_P0031121 Psmd11 protein_coding nonsense_mediated_decay MGP_AJ_T0003349.1 MGP_AJ_G0003084.1 mouse_genomes_project 11 116653563 116655293 - Gm11723 antisense antisense MGP_AJ_T0012500.1 MGP_AJ_G0010595.1 mouse_genomes_project 11 15105349 15105881 - processed_pseudogene processed_pseudogene MGP_AJ_T0012477.1 MGP_AJ_G0010572.1 mouse_genomes_project 11 3832251 3833017 - processed_pseudogene processed_pseudogene MGP_AJ_T0003133.1 MGP_AJ_G0002906.1 mouse_genomes_project 11 21092769 21105068 - 4930538E20Rik antisense antisense MGP_AJ_T0003134.1 MGP_AJ_G0002906.1 mouse_genomes_project 11 21099114 21105025 - 4930538E20Rik antisense antisense MGP_AJ_T0012672.1 MGP_AJ_G0010767.1 mouse_genomes_project 11 71299632 71300019 + processed_pseudogene processed_pseudogene MGP_AJ_T0012476.1 MGP_AJ_G0010571.1 mouse_genomes_project 11 3793838 3794152 - processed_pseudogene processed_pseudogene MGP_AJ_T0033402.1 MGP_AJ_G0019358.1 mouse_genomes_project 11 114284205 114299360 + MGP_AJ_P0033402 Armc7 protein_coding protein_coding MGP_AJ_T0033403.1 MGP_AJ_G0019358.1 mouse_genomes_project 11 114284236 114292492 + Armc7 protein_coding processed_transcript MGP_AJ_T0033404.1 MGP_AJ_G0019358.1 mouse_genomes_project 11 114284280 114294005 + Armc7 protein_coding processed_transcript MGP_AJ_T0033405.1 MGP_AJ_G0019358.1 mouse_genomes_project 11 114284492 114297955 + Armc7 protein_coding processed_transcript MGP_AJ_T0012711.1 MGP_AJ_G0010806.1 mouse_genomes_project 11 85476201 85476473 + processed_pseudogene processed_pseudogene MGP_AJ_T0098549.1 MGP_AJ_G0036533.1 mouse_genomes_project 11 115169315 115169431 - n-R5s74 rRNA rRNA MGP_AJ_T0000850.1 MGP_AJ_G0000785.1 mouse_genomes_project 11 104563312 104564854 + TEC TEC MGP_AJ_T0028406.1 MGP_AJ_G0018098.1 mouse_genomes_project 11 29043979 29102291 + MGP_AJ_P0028406 Nsg2 protein_coding protein_coding MGP_AJ_T0028407.1 MGP_AJ_G0018098.1 mouse_genomes_project 11 29043979 29061297 + MGP_AJ_P0028407 Nsg2 protein_coding protein_coding MGP_AJ_T0028408.1 MGP_AJ_G0018098.1 mouse_genomes_project 11 29044018 29076667 + MGP_AJ_P0028408 Nsg2 protein_coding protein_coding MGP_AJ_T0029143.1 MGP_AJ_G0018296.1 mouse_genomes_project 11 52632990 52659862 - MGP_AJ_P0029143 Slc36a2 protein_coding protein_coding MGP_AJ_T0029144.1 MGP_AJ_G0018296.1 mouse_genomes_project 11 52642591 52659862 - Slc36a2 protein_coding processed_transcript MGP_AJ_T0011309.1 MGP_AJ_G0009431.1 mouse_genomes_project 11 87361320 87361582 - Gm24734 misc_RNA misc_RNA MGP_AJ_T0034229.1 MGP_AJ_G0019518.1 mouse_genomes_project 11 120417293 120425644 - MGP_AJ_P0034229 Zfp750 protein_coding protein_coding MGP_AJ_T0032198.1 MGP_AJ_G0019057.1 mouse_genomes_project 11 97712493 97718027 - MGP_AJ_P0032198 Krt27 protein_coding protein_coding MGP_AJ_T0012706.1 MGP_AJ_G0010801.1 mouse_genomes_project 11 83275425 83276093 - processed_pseudogene processed_pseudogene MGP_AJ_T0029245.1 MGP_AJ_G0018339.1 mouse_genomes_project 11 56204437 56215449 - MGP_AJ_P0029245 protein_coding protein_coding MGP_AJ_T0012603.1 MGP_AJ_G0010698.1 mouse_genomes_project 11 49557210 49558010 + processed_pseudogene processed_pseudogene MGP_AJ_T0032224.1 MGP_AJ_G0019081.1 mouse_genomes_project 11 98042730 98043650 - MGP_AJ_P0032224 Krtap4-6 protein_coding protein_coding MGP_AJ_T0012468.1 MGP_AJ_G0010563.1 mouse_genomes_project 11 3202983 3203327 + processed_pseudogene processed_pseudogene MGP_AJ_T0030264.1 MGP_AJ_G0018575.1 mouse_genomes_project 11 68498781 68501644 - MGP_AJ_P0030264 Slc25a11 protein_coding protein_coding MGP_AJ_T0030265.1 MGP_AJ_G0018575.1 mouse_genomes_project 11 68499280 68500496 - Slc25a11 protein_coding retained_intron MGP_AJ_T0030266.1 MGP_AJ_G0018575.1 mouse_genomes_project 11 68499816 68502065 - MGP_AJ_P0030266 Slc25a11 protein_coding protein_coding MGP_AJ_T0030267.1 MGP_AJ_G0018575.1 mouse_genomes_project 11 68500494 68501564 - Slc25a11 protein_coding retained_intron MGP_AJ_T0030268.1 MGP_AJ_G0018575.1 mouse_genomes_project 11 68500500 68501485 - MGP_AJ_P0030268 Slc25a11 protein_coding protein_coding MGP_AJ_T0012479.1 MGP_AJ_G0010574.1 mouse_genomes_project 11 5781714 5782484 - processed_pseudogene processed_pseudogene MGP_AJ_T0033867.1 MGP_AJ_G0019446.1 mouse_genomes_project 11 118190241 118202411 - MGP_AJ_P0033867 Eif4a3 protein_coding protein_coding MGP_AJ_T0033868.1 MGP_AJ_G0019446.1 mouse_genomes_project 11 118190242 118190955 - Eif4a3 protein_coding processed_transcript MGP_AJ_T0033869.1 MGP_AJ_G0019446.1 mouse_genomes_project 11 118190242 118190889 - Eif4a3 protein_coding processed_transcript MGP_AJ_T0033870.1 MGP_AJ_G0019446.1 mouse_genomes_project 11 118194630 118195726 - Eif4a3 protein_coding processed_transcript MGP_AJ_T0033871.1 MGP_AJ_G0019446.1 mouse_genomes_project 11 118194971 118202336 - MGP_AJ_P0033871 Eif4a3 protein_coding protein_coding MGP_AJ_T0033872.1 MGP_AJ_G0019446.1 mouse_genomes_project 11 118200018 118202340 - Eif4a3 protein_coding processed_transcript MGP_AJ_T0028381.1 MGP_AJ_G0018090.1 mouse_genomes_project 11 27919596 27927712 + MGP_AJ_P0028381 Gpr75 protein_coding protein_coding MGP_AJ_T0030753.1 MGP_AJ_G0018700.1 mouse_genomes_project 11 74352975 74360114 + MGP_AJ_P0030753 Timm22 protein_coding protein_coding MGP_AJ_T0030754.1 MGP_AJ_G0018700.1 mouse_genomes_project 11 74353166 74362077 + MGP_AJ_P0030754 Timm22 protein_coding protein_coding MGP_AJ_T0030755.1 MGP_AJ_G0018700.1 mouse_genomes_project 11 74353214 74359867 + MGP_AJ_P0030755 Timm22 protein_coding protein_coding MGP_AJ_T0030756.1 MGP_AJ_G0018700.1 mouse_genomes_project 11 74353228 74355716 + MGP_AJ_P0030756 Timm22 protein_coding nonsense_mediated_decay MGP_AJ_T0006281.1 MGP_AJ_G0005245.1 mouse_genomes_project 11 74555153 74562889 + Gm26780 lincRNA lincRNA MGP_AJ_T0003152.1 MGP_AJ_G0002924.1 mouse_genomes_project 11 48001265 48002511 - Gm12199 antisense antisense MGP_AJ_T0032794.1 MGP_AJ_G0019221.1 mouse_genomes_project 11 101574104 101589198 + Nmt1 protein_coding processed_transcript MGP_AJ_T0032795.1 MGP_AJ_G0019221.1 mouse_genomes_project 11 101574260 101619027 + MGP_AJ_P0032795 Nmt1 protein_coding protein_coding MGP_AJ_T0032796.1 MGP_AJ_G0019221.1 mouse_genomes_project 11 101574499 101605482 + Nmt1 protein_coding processed_transcript MGP_AJ_T0030010.1 MGP_AJ_G0018521.1 mouse_genomes_project 11 67586958 67601186 + MGP_AJ_P0030010 Zbtb4 protein_coding protein_coding MGP_AJ_T0030011.1 MGP_AJ_G0018521.1 mouse_genomes_project 11 67586958 67604997 + MGP_AJ_P0030011 Zbtb4 protein_coding protein_coding MGP_AJ_T0030012.1 MGP_AJ_G0018521.1 mouse_genomes_project 11 67587030 67602925 + MGP_AJ_P0030012 Zbtb4 protein_coding protein_coding MGP_AJ_T0030013.1 MGP_AJ_G0018521.1 mouse_genomes_project 11 67587052 67599286 + MGP_AJ_P0030013 Zbtb4 protein_coding protein_coding MGP_AJ_T0030014.1 MGP_AJ_G0018521.1 mouse_genomes_project 11 67587485 67597015 + MGP_AJ_P0030014 Zbtb4 protein_coding protein_coding MGP_AJ_T0030015.1 MGP_AJ_G0018521.1 mouse_genomes_project 11 67587580 67596999 + MGP_AJ_P0030015 Zbtb4 protein_coding protein_coding MGP_AJ_T0030016.1 MGP_AJ_G0018521.1 mouse_genomes_project 11 67596382 67600650 + MGP_AJ_P0030016 Zbtb4 protein_coding protein_coding MGP_AJ_T0031579.1 MGP_AJ_G0018907.1 mouse_genomes_project 11 88695005 88861950 - MGP_AJ_P0031579 Stxbp4 protein_coding protein_coding MGP_AJ_T0031580.1 MGP_AJ_G0018907.1 mouse_genomes_project 11 88710527 88772069 - MGP_AJ_P0031580 Stxbp4 protein_coding protein_coding MGP_AJ_T0031581.1 MGP_AJ_G0018907.1 mouse_genomes_project 11 88757571 88861928 - MGP_AJ_P0031581 Stxbp4 protein_coding protein_coding MGP_AJ_T0031582.1 MGP_AJ_G0018907.1 mouse_genomes_project 11 88820745 88861931 - MGP_AJ_P0031582 Stxbp4 protein_coding protein_coding MGP_AJ_T0031583.1 MGP_AJ_G0018907.1 mouse_genomes_project 11 88824462 88861942 - MGP_AJ_P0031583 Stxbp4 protein_coding protein_coding MGP_AJ_T0031584.1 MGP_AJ_G0018907.1 mouse_genomes_project 11 88841915 88854802 - MGP_AJ_P0031584 Stxbp4 protein_coding protein_coding MGP_AJ_T0031585.1 MGP_AJ_G0018907.1 mouse_genomes_project 11 88854095 88861939 - Stxbp4 protein_coding processed_transcript MGP_AJ_T0099348.1 MGP_AJ_G0037314.1 mouse_genomes_project 11 77642311 77642414 - Gm25867 snRNA snRNA MGP_AJ_T0033555.1 MGP_AJ_G0019383.1 mouse_genomes_project 11 114941808 114944177 - Trim47 protein_coding processed_transcript MGP_AJ_T0033556.1 MGP_AJ_G0019383.1 mouse_genomes_project 11 114941808 114946303 - MGP_AJ_P0033556 Trim47 protein_coding protein_coding MGP_AJ_T0033557.1 MGP_AJ_G0019383.1 mouse_genomes_project 11 114941808 114946312 - MGP_AJ_P0033557 Trim47 protein_coding protein_coding MGP_AJ_T0033558.1 MGP_AJ_G0019383.1 mouse_genomes_project 11 114942265 114943141 - Trim47 protein_coding processed_transcript MGP_AJ_T0033559.1 MGP_AJ_G0019383.1 mouse_genomes_project 11 114942395 114943798 - Trim47 protein_coding processed_transcript MGP_AJ_T0033560.1 MGP_AJ_G0019383.1 mouse_genomes_project 11 114942448 114944093 - Trim47 protein_coding processed_transcript MGP_AJ_T0033561.1 MGP_AJ_G0019383.1 mouse_genomes_project 11 114943868 114964544 - Trim47 protein_coding processed_transcript MGP_AJ_T0029421.1 MGP_AJ_G0018391.1 mouse_genomes_project 11 58397111 58397716 - Flii protein_coding retained_intron MGP_AJ_T0029422.1 MGP_AJ_G0018391.1 mouse_genomes_project 11 58397131 58410246 - MGP_AJ_P0029422 Flii protein_coding protein_coding MGP_AJ_T0029423.1 MGP_AJ_G0018391.1 mouse_genomes_project 11 58402280 58403195 - Flii protein_coding retained_intron MGP_AJ_T0029424.1 MGP_AJ_G0018391.1 mouse_genomes_project 11 58407347 58410206 - Flii protein_coding retained_intron MGP_AJ_T0012696.1 MGP_AJ_G0010791.1 mouse_genomes_project 11 77916831 77916978 + processed_pseudogene processed_pseudogene MGP_AJ_T0003210.1 MGP_AJ_G0002973.1 mouse_genomes_project 11 64969944 64997920 - Gm12300 antisense antisense MGP_AJ_T0003211.1 MGP_AJ_G0002973.1 mouse_genomes_project 11 64984213 64989090 - Gm12300 antisense antisense MGP_AJ_T0003212.1 MGP_AJ_G0002973.1 mouse_genomes_project 11 64984531 64997628 - Gm12300 antisense antisense MGP_AJ_T0028774.1 MGP_AJ_G0018206.1 mouse_genomes_project 11 47116383 47158443 + MGP_AJ_P0028774 Mapk9 protein_coding protein_coding MGP_AJ_T0028775.1 MGP_AJ_G0018206.1 mouse_genomes_project 11 47116383 47158443 + MGP_AJ_P0028775 Mapk9 protein_coding protein_coding MGP_AJ_T0028776.1 MGP_AJ_G0018206.1 mouse_genomes_project 11 47116383 47158443 + MGP_AJ_P0028776 Mapk9 protein_coding protein_coding MGP_AJ_T0028777.1 MGP_AJ_G0018206.1 mouse_genomes_project 11 47116385 47158443 + MGP_AJ_P0028777 Mapk9 protein_coding protein_coding MGP_AJ_T0028778.1 MGP_AJ_G0018206.1 mouse_genomes_project 11 47116403 47145231 + Mapk9 protein_coding processed_transcript MGP_AJ_T0028779.1 MGP_AJ_G0018206.1 mouse_genomes_project 11 47116525 47143002 + Mapk9 protein_coding processed_transcript MGP_AJ_T0028780.1 MGP_AJ_G0018206.1 mouse_genomes_project 11 47123845 47158433 + MGP_AJ_P0028780 Mapk9 protein_coding protein_coding MGP_AJ_T0028781.1 MGP_AJ_G0018206.1 mouse_genomes_project 11 47123862 47143930 + Mapk9 protein_coding processed_transcript MGP_AJ_T0028782.1 MGP_AJ_G0018206.1 mouse_genomes_project 11 47123889 47155332 + MGP_AJ_P0028782 Mapk9 protein_coding protein_coding MGP_AJ_T0028783.1 MGP_AJ_G0018206.1 mouse_genomes_project 11 47123889 47155332 + MGP_AJ_P0028783 Mapk9 protein_coding protein_coding MGP_AJ_T0034199.1 MGP_AJ_G0019510.1 mouse_genomes_project 11 120140834 120147554 - MGP_AJ_P0034199 BC017643 protein_coding protein_coding MGP_AJ_T0034200.1 MGP_AJ_G0019510.1 mouse_genomes_project 11 120140834 120147550 - MGP_AJ_P0034200 BC017643 protein_coding protein_coding MGP_AJ_T0034201.1 MGP_AJ_G0019510.1 mouse_genomes_project 11 120141910 120147031 - BC017643 protein_coding retained_intron MGP_AJ_T0034202.1 MGP_AJ_G0019510.1 mouse_genomes_project 11 120142193 120145627 - BC017643 protein_coding retained_intron MGP_AJ_T0034203.1 MGP_AJ_G0019510.1 mouse_genomes_project 11 120142472 120147340 - MGP_AJ_P0034203 BC017643 protein_coding protein_coding MGP_AJ_T0034204.1 MGP_AJ_G0019510.1 mouse_genomes_project 11 120142816 120147480 - MGP_AJ_P0034204 BC017643 protein_coding protein_coding MGP_AJ_T0034205.1 MGP_AJ_G0019510.1 mouse_genomes_project 11 120142843 120147567 - MGP_AJ_P0034205 BC017643 protein_coding protein_coding MGP_AJ_T0034206.1 MGP_AJ_G0019510.1 mouse_genomes_project 11 120145015 120147468 - BC017643 protein_coding processed_transcript MGP_AJ_T0028524.1 MGP_AJ_G0018132.1 mouse_genomes_project 11 33137953 34381736 - MGP_AJ_P0028524 Tenm2 protein_coding protein_coding MGP_AJ_T0028525.1 MGP_AJ_G0018132.1 mouse_genomes_project 11 33138955 34079606 - MGP_AJ_P0028525 Tenm2 protein_coding protein_coding MGP_AJ_T0028526.1 MGP_AJ_G0018132.1 mouse_genomes_project 11 33139328 34079606 - MGP_AJ_P0028526 Tenm2 protein_coding protein_coding MGP_AJ_T0028527.1 MGP_AJ_G0018132.1 mouse_genomes_project 11 33272270 34079606 - Tenm2 protein_coding processed_transcript MGP_AJ_T0028528.1 MGP_AJ_G0018132.1 mouse_genomes_project 11 33273542 33807431 - Tenm2 protein_coding processed_transcript MGP_AJ_T0028529.1 MGP_AJ_G0018132.1 mouse_genomes_project 11 33296357 33623146 - Tenm2 protein_coding processed_transcript MGP_AJ_T0028530.1 MGP_AJ_G0018132.1 mouse_genomes_project 11 33511469 33559982 - Tenm2 protein_coding processed_transcript MGP_AJ_T0028531.1 MGP_AJ_G0018132.1 mouse_genomes_project 11 34079644 34381818 - Tenm2 protein_coding processed_transcript MGP_AJ_T0028223.1 MGP_AJ_G0018059.1 mouse_genomes_project 11 20231581 20421774 + MGP_AJ_P0028223 Usp34 protein_coding protein_coding MGP_AJ_T0028224.1 MGP_AJ_G0018059.1 mouse_genomes_project 11 20231602 20420958 + MGP_AJ_P0028224 Usp34 protein_coding protein_coding MGP_AJ_T0028225.1 MGP_AJ_G0018059.1 mouse_genomes_project 11 20346136 20351794 + Usp34 protein_coding processed_transcript MGP_AJ_T0028226.1 MGP_AJ_G0018059.1 mouse_genomes_project 11 20351196 20387502 + MGP_AJ_P0028226 Usp34 protein_coding protein_coding MGP_AJ_T0028227.1 MGP_AJ_G0018059.1 mouse_genomes_project 11 20388753 20391712 + Usp34 protein_coding processed_transcript MGP_AJ_T0028228.1 MGP_AJ_G0018059.1 mouse_genomes_project 11 20388892 20391426 + Usp34 protein_coding processed_transcript MGP_AJ_T0028229.1 MGP_AJ_G0018059.1 mouse_genomes_project 11 20401093 20419582 + MGP_AJ_P0028229 Usp34 protein_coding protein_coding MGP_AJ_T0028230.1 MGP_AJ_G0018059.1 mouse_genomes_project 11 20418018 20418537 + Usp34 protein_coding processed_transcript MGP_AJ_T0031824.1 MGP_AJ_G0018965.1 mouse_genomes_project 11 94348266 94354510 - MGP_AJ_P0031824 Atp5g1 protein_coding protein_coding MGP_AJ_T0031825.1 MGP_AJ_G0018965.1 mouse_genomes_project 11 94348281 94353875 - MGP_AJ_P0031825 Atp5g1 protein_coding protein_coding MGP_AJ_T0006350.1 MGP_AJ_G0005294.1 mouse_genomes_project 11 111577765 111578859 + 4933434M16Rik lincRNA lincRNA MGP_AJ_T0006351.1 MGP_AJ_G0005294.1 mouse_genomes_project 11 111577790 111586024 + 4933434M16Rik lincRNA lincRNA MGP_AJ_T0034077.1 MGP_AJ_G0019486.1 mouse_genomes_project 11 119545780 119553616 - MGP_AJ_P0034077 Pycr1 protein_coding protein_coding MGP_AJ_T0034078.1 MGP_AJ_G0019486.1 mouse_genomes_project 11 119549361 119553694 - MGP_AJ_P0034078 Pycr1 protein_coding protein_coding MGP_AJ_T0034079.1 MGP_AJ_G0019486.1 mouse_genomes_project 11 119551169 119553589 - MGP_AJ_P0034079 Pycr1 protein_coding protein_coding MGP_AJ_T0034080.1 MGP_AJ_G0019486.1 mouse_genomes_project 11 119551423 119553650 - MGP_AJ_P0034080 Pycr1 protein_coding protein_coding MGP_AJ_T0034081.1 MGP_AJ_G0019486.1 mouse_genomes_project 11 119551659 119553715 - MGP_AJ_P0034081 Pycr1 protein_coding protein_coding MGP_AJ_T0034082.1 MGP_AJ_G0019486.1 mouse_genomes_project 11 119552690 119553650 - Pycr1 protein_coding retained_intron MGP_AJ_T0032350.1 MGP_AJ_G0019133.1 mouse_genomes_project 11 99155400 99162829 - Kat2a protein_coding processed_transcript MGP_AJ_T0032351.1 MGP_AJ_G0019133.1 mouse_genomes_project 11 99155400 99163105 - Kat2a protein_coding processed_transcript MGP_AJ_T0032352.1 MGP_AJ_G0019133.1 mouse_genomes_project 11 99155400 99163121 - MGP_AJ_P0032352 Kat2a protein_coding protein_coding MGP_AJ_T0032353.1 MGP_AJ_G0019133.1 mouse_genomes_project 11 99155400 99163121 - MGP_AJ_P0032353 Kat2a protein_coding protein_coding MGP_AJ_T0029180.1 MGP_AJ_G0018308.1 mouse_genomes_project 11 55270293 55278899 + MGP_AJ_P0029180 Sap30l protein_coding protein_coding MGP_AJ_T0033045.1 MGP_AJ_G0019279.1 mouse_genomes_project 11 105383239 105400840 + MGP_AJ_P0033045 Milr1 protein_coding protein_coding MGP_AJ_T0033046.1 MGP_AJ_G0019279.1 mouse_genomes_project 11 105383253 105399616 + MGP_AJ_P0033046 Milr1 protein_coding protein_coding MGP_AJ_T0033047.1 MGP_AJ_G0019279.1 mouse_genomes_project 11 105383253 105399193 + MGP_AJ_P0033047 Milr1 protein_coding protein_coding MGP_AJ_T0033048.1 MGP_AJ_G0019279.1 mouse_genomes_project 11 105383253 105399193 + MGP_AJ_P0033048 Milr1 protein_coding protein_coding MGP_AJ_T0033049.1 MGP_AJ_G0019279.1 mouse_genomes_project 11 105383278 105400765 + MGP_AJ_P0033049 Milr1 protein_coding protein_coding MGP_AJ_T0033050.1 MGP_AJ_G0019279.1 mouse_genomes_project 11 105383281 105399811 + MGP_AJ_P0033050 Milr1 protein_coding protein_coding MGP_AJ_T0033051.1 MGP_AJ_G0019279.1 mouse_genomes_project 11 105383281 105400763 + MGP_AJ_P0033051 Milr1 protein_coding nonsense_mediated_decay MGP_AJ_T0033052.1 MGP_AJ_G0019279.1 mouse_genomes_project 11 105386956 105400766 + MGP_AJ_P0033052 Milr1 protein_coding protein_coding MGP_AJ_T0032459.1 MGP_AJ_G0019158.1 mouse_genomes_project 11 99727652 99744394 + MGP_AJ_P0032459 Wnk4 protein_coding nonsense_mediated_decay MGP_AJ_T0032460.1 MGP_AJ_G0019158.1 mouse_genomes_project 11 99727683 99744394 + MGP_AJ_P0032460 Wnk4 protein_coding protein_coding MGP_AJ_T0032461.1 MGP_AJ_G0019158.1 mouse_genomes_project 11 99727740 99744259 + MGP_AJ_P0032461 Wnk4 protein_coding nonsense_mediated_decay MGP_AJ_T0032462.1 MGP_AJ_G0019158.1 mouse_genomes_project 11 99732407 99741164 + MGP_AJ_P0032462 Wnk4 protein_coding nonsense_mediated_decay MGP_AJ_T0032463.1 MGP_AJ_G0019158.1 mouse_genomes_project 11 99743630 99744391 + MGP_AJ_P0032463 Wnk4 protein_coding protein_coding MGP_AJ_T0033486.1 MGP_AJ_G0019371.1 mouse_genomes_project 11 114648135 114682857 + MGP_AJ_P0033486 Llgl2 protein_coding protein_coding MGP_AJ_T0033487.1 MGP_AJ_G0019371.1 mouse_genomes_project 11 114648144 114682855 + MGP_AJ_P0033487 Llgl2 protein_coding protein_coding MGP_AJ_T0033488.1 MGP_AJ_G0019371.1 mouse_genomes_project 11 114648144 114669805 + MGP_AJ_P0033488 Llgl2 protein_coding protein_coding MGP_AJ_T0033489.1 MGP_AJ_G0019371.1 mouse_genomes_project 11 114656137 114669247 + MGP_AJ_P0033489 Llgl2 protein_coding protein_coding MGP_AJ_T0033490.1 MGP_AJ_G0019371.1 mouse_genomes_project 11 114658094 114669752 + MGP_AJ_P0033490 Llgl2 protein_coding protein_coding MGP_AJ_T0033491.1 MGP_AJ_G0019371.1 mouse_genomes_project 11 114658483 114669812 + MGP_AJ_P0033491 Llgl2 protein_coding protein_coding MGP_AJ_T0033492.1 MGP_AJ_G0019371.1 mouse_genomes_project 11 114658492 114669840 + MGP_AJ_P0033492 Llgl2 protein_coding protein_coding MGP_AJ_T0033493.1 MGP_AJ_G0019371.1 mouse_genomes_project 11 114680328 114681396 + Llgl2 protein_coding retained_intron MGP_AJ_T0033494.1 MGP_AJ_G0019371.1 mouse_genomes_project 11 114680812 114681935 + Llgl2 protein_coding processed_transcript MGP_AJ_T0033495.1 MGP_AJ_G0019371.1 mouse_genomes_project 11 114680879 114682857 + MGP_AJ_P0033495 Llgl2 protein_coding protein_coding MGP_AJ_T0033496.1 MGP_AJ_G0019371.1 mouse_genomes_project 11 114681308 114682661 + Llgl2 protein_coding retained_intron MGP_AJ_T0033497.1 MGP_AJ_G0019371.1 mouse_genomes_project 11 114682109 114682857 + Llgl2 protein_coding retained_intron MGP_AJ_T0012637.1 MGP_AJ_G0010732.1 mouse_genomes_project 11 58373243 58373624 - processed_pseudogene processed_pseudogene MGP_AJ_T0006178.1 MGP_AJ_G0005158.1 mouse_genomes_project 11 15498747 15595317 - Gm12023 lincRNA lincRNA MGP_AJ_T0012668.1 MGP_AJ_G0010763.1 mouse_genomes_project 11 68942757 68943470 + processed_pseudogene processed_pseudogene MGP_AJ_T0030546.1 MGP_AJ_G0018650.1 mouse_genomes_project 11 71970725 71971728 - MGP_AJ_P0030546 Olfr399 protein_coding protein_coding MGP_AJ_T0006233.1 MGP_AJ_G0005205.1 mouse_genomes_project 11 43616811 43623698 - 2310031A07Rik lincRNA lincRNA MGP_AJ_T0031884.1 MGP_AJ_G0018983.1 mouse_genomes_project 11 95201579 95210464 - MGP_AJ_P0031884 Cdk5rap3 protein_coding nonsense_mediated_decay MGP_AJ_T0031885.1 MGP_AJ_G0018983.1 mouse_genomes_project 11 95201579 95210464 - MGP_AJ_P0031885 Cdk5rap3 protein_coding protein_coding MGP_AJ_T0031886.1 MGP_AJ_G0018983.1 mouse_genomes_project 11 95201970 95202909 - Cdk5rap3 protein_coding retained_intron MGP_AJ_T0031887.1 MGP_AJ_G0018983.1 mouse_genomes_project 11 95205607 95207019 - Cdk5rap3 protein_coding retained_intron MGP_AJ_T0031888.1 MGP_AJ_G0018983.1 mouse_genomes_project 11 95206104 95210360 - MGP_AJ_P0031888 Cdk5rap3 protein_coding protein_coding MGP_AJ_T0031889.1 MGP_AJ_G0018983.1 mouse_genomes_project 11 95206121 95210075 - MGP_AJ_P0031889 Cdk5rap3 protein_coding protein_coding MGP_AJ_T0031890.1 MGP_AJ_G0018983.1 mouse_genomes_project 11 95206143 95210397 - MGP_AJ_P0031890 Cdk5rap3 protein_coding nonsense_mediated_decay MGP_AJ_T0031891.1 MGP_AJ_G0018983.1 mouse_genomes_project 11 95206376 95210334 - MGP_AJ_P0031891 Cdk5rap3 protein_coding protein_coding MGP_AJ_T0031892.1 MGP_AJ_G0018983.1 mouse_genomes_project 11 95206397 95210382 - MGP_AJ_P0031892 Cdk5rap3 protein_coding nonsense_mediated_decay MGP_AJ_T0031893.1 MGP_AJ_G0018983.1 mouse_genomes_project 11 95206507 95210382 - MGP_AJ_P0031893 Cdk5rap3 protein_coding protein_coding MGP_AJ_T0031894.1 MGP_AJ_G0018983.1 mouse_genomes_project 11 95206844 95210335 - Cdk5rap3 protein_coding retained_intron MGP_AJ_T0028669.1 MGP_AJ_G0018168.1 mouse_genomes_project 11 43687267 43701321 + MGP_AJ_P0028669 Gm12169 protein_coding protein_coding MGP_AJ_T0032654.1 MGP_AJ_G0019196.1 mouse_genomes_project 11 100782772 100793448 + MGP_AJ_P0032654 Asb16 protein_coding protein_coding MGP_AJ_T0028100.1 MGP_AJ_G0018026.1 mouse_genomes_project 11 13852171 13855245 + MGP_AJ_P0028100 Fbxo48 protein_coding protein_coding MGP_AJ_T0028101.1 MGP_AJ_G0018026.1 mouse_genomes_project 11 13852206 13855570 + MGP_AJ_P0028101 Fbxo48 protein_coding protein_coding MGP_AJ_T0101707.1 MGP_AJ_G0039656.1 mouse_genomes_project 11 3629162 3639455 - transcribed_processed_pseudogene processed_transcript MGP_AJ_T0101708.1 MGP_AJ_G0039656.1 mouse_genomes_project 11 3629388 3629854 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0101709.1 MGP_AJ_G0039656.1 mouse_genomes_project 11 3630154 3637949 - transcribed_processed_pseudogene processed_transcript MGP_AJ_T0101710.1 MGP_AJ_G0039656.1 mouse_genomes_project 11 3630427 3639432 - transcribed_processed_pseudogene processed_transcript MGP_AJ_T0009699.1 MGP_AJ_G0007821.1 mouse_genomes_project 11 67479058 67479141 + Mir1934 miRNA miRNA MGP_AJ_T0030777.1 MGP_AJ_G0018706.1 mouse_genomes_project 11 74840237 74854639 + MGP_AJ_P0030777 Tmigd1 protein_coding protein_coding MGP_AJ_T0030778.1 MGP_AJ_G0018706.1 mouse_genomes_project 11 74842556 74848170 + MGP_AJ_P0030778 Tmigd1 protein_coding protein_coding MGP_AJ_T0030779.1 MGP_AJ_G0018706.1 mouse_genomes_project 11 74842626 74854638 + MGP_AJ_P0030779 Tmigd1 protein_coding protein_coding MGP_AJ_T0030780.1 MGP_AJ_G0018706.1 mouse_genomes_project 11 74842643 74854149 + Tmigd1 protein_coding processed_transcript MGP_AJ_T0033095.1 MGP_AJ_G0019286.1 mouse_genomes_project 11 105805554 105828283 - MGP_AJ_P0033095 Nol11 protein_coding protein_coding MGP_AJ_T0033096.1 MGP_AJ_G0019286.1 mouse_genomes_project 11 105805554 105828283 - MGP_AJ_P0033096 Nol11 protein_coding protein_coding MGP_AJ_T0033097.1 MGP_AJ_G0019286.1 mouse_genomes_project 11 105806251 105807325 - Nol11 protein_coding processed_transcript MGP_AJ_T0033098.1 MGP_AJ_G0019286.1 mouse_genomes_project 11 105817438 105823723 - Nol11 protein_coding processed_transcript MGP_AJ_T0033099.1 MGP_AJ_G0019286.1 mouse_genomes_project 11 105825441 105828254 - Nol11 protein_coding processed_transcript MGP_AJ_T0028075.1 MGP_AJ_G0018022.1 mouse_genomes_project 11 9201363 9431964 - MGP_AJ_P0028075 Cobl protein_coding protein_coding MGP_AJ_T0028076.1 MGP_AJ_G0018022.1 mouse_genomes_project 11 9201431 9432117 - MGP_AJ_P0028076 Cobl protein_coding protein_coding MGP_AJ_T0028077.1 MGP_AJ_G0018022.1 mouse_genomes_project 11 9201431 9432019 - MGP_AJ_P0028077 Cobl protein_coding protein_coding MGP_AJ_T0028078.1 MGP_AJ_G0018022.1 mouse_genomes_project 11 9201433 9378594 - MGP_AJ_P0028078 Cobl protein_coding protein_coding MGP_AJ_T0028079.1 MGP_AJ_G0018022.1 mouse_genomes_project 11 9201433 9432120 - MGP_AJ_P0028079 Cobl protein_coding protein_coding MGP_AJ_T0028080.1 MGP_AJ_G0018022.1 mouse_genomes_project 11 9201866 9431960 - MGP_AJ_P0028080 Cobl protein_coding nonsense_mediated_decay MGP_AJ_T0028081.1 MGP_AJ_G0018022.1 mouse_genomes_project 11 9231760 9335406 - MGP_AJ_P0028081 Cobl protein_coding protein_coding MGP_AJ_T0028082.1 MGP_AJ_G0018022.1 mouse_genomes_project 11 9261149 9335354 - MGP_AJ_P0028082 Cobl protein_coding protein_coding MGP_AJ_T0028083.1 MGP_AJ_G0018022.1 mouse_genomes_project 11 9269611 9431912 - Cobl protein_coding retained_intron MGP_AJ_T0028084.1 MGP_AJ_G0018022.1 mouse_genomes_project 11 9309561 9343829 - MGP_AJ_P0028084 Cobl protein_coding protein_coding MGP_AJ_T0012564.1 MGP_AJ_G0010659.1 mouse_genomes_project 11 30526554 30527086 + processed_pseudogene processed_pseudogene MGP_AJ_T0102252.1 MGP_AJ_G0039995.1 mouse_genomes_project 11 93014218 93014958 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0028673.1 MGP_AJ_G0018171.1 mouse_genomes_project 11 43799994 43854747 - MGP_AJ_P0028673 Timd2 protein_coding protein_coding MGP_AJ_T0028674.1 MGP_AJ_G0018171.1 mouse_genomes_project 11 43834409 43871344 - MGP_AJ_P0028674 Timd2 protein_coding protein_coding MGP_AJ_T0028675.1 MGP_AJ_G0018171.1 mouse_genomes_project 11 43834409 43864379 - MGP_AJ_P0028675 Timd2 protein_coding protein_coding MGP_AJ_T0028676.1 MGP_AJ_G0018171.1 mouse_genomes_project 11 43851425 43871346 - MGP_AJ_P0028676 Timd2 protein_coding protein_coding MGP_AJ_T0003225.1 MGP_AJ_G0002984.1 mouse_genomes_project 11 72902980 72903702 - Gm28180 antisense antisense MGP_AJ_T0011792.1 MGP_AJ_G0009913.1 mouse_genomes_project 11 71297773 71301914 - MGP_AJ_P0011792 Olfr377-ps1 polymorphic_pseudogene polymorphic_pseudogene MGP_AJ_T0030200.1 MGP_AJ_G0018561.1 mouse_genomes_project 11 68230594 68250143 - MGP_AJ_P0030200 Pelp1 protein_coding protein_coding MGP_AJ_T0030201.1 MGP_AJ_G0018561.1 mouse_genomes_project 11 68240342 68250146 - MGP_AJ_P0030201 Pelp1 protein_coding protein_coding MGP_AJ_T0012759.1 MGP_AJ_G0010854.1 mouse_genomes_project 11 103611548 103612589 - processed_pseudogene processed_pseudogene MGP_AJ_T0099369.1 MGP_AJ_G0037335.1 mouse_genomes_project 11 97227975 97228079 - Gm23640 snRNA snRNA MGP_AJ_T0028507.1 MGP_AJ_G0018126.1 mouse_genomes_project 11 31924829 31951546 - MGP_AJ_P0028507 Spdl1 protein_coding protein_coding MGP_AJ_T0028508.1 MGP_AJ_G0018126.1 mouse_genomes_project 11 31937360 31939271 - Spdl1 protein_coding retained_intron MGP_AJ_T0028509.1 MGP_AJ_G0018126.1 mouse_genomes_project 11 31945589 31951497 - Spdl1 protein_coding retained_intron MGP_AJ_T0003244.1 MGP_AJ_G0003001.1 mouse_genomes_project 11 80992665 81011258 - Slfn5os antisense antisense MGP_AJ_T0006303.1 MGP_AJ_G0005259.1 mouse_genomes_project 11 85244400 85245102 - Gm11479 lincRNA lincRNA MGP_AJ_T0102244.1 MGP_AJ_G0039987.1 mouse_genomes_project 11 72212139 72213252 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0031721.1 MGP_AJ_G0018936.1 mouse_genomes_project 11 92975755 92976988 + MGP_AJ_P0031721 Cdc34b protein_coding protein_coding MGP_AJ_T0031722.1 MGP_AJ_G0018936.1 mouse_genomes_project 11 92975755 92977007 + MGP_AJ_P0031722 Cdc34b protein_coding protein_coding MGP_AJ_T0029546.1 MGP_AJ_G0018416.1 mouse_genomes_project 11 59480649 59574429 - MGP_AJ_P0029546 Ulk2 protein_coding protein_coding MGP_AJ_T0029547.1 MGP_AJ_G0018416.1 mouse_genomes_project 11 59482502 59573858 - Ulk2 protein_coding processed_transcript MGP_AJ_T0029548.1 MGP_AJ_G0018416.1 mouse_genomes_project 11 59508605 59512725 - Ulk2 protein_coding processed_transcript MGP_AJ_T0006195.1 MGP_AJ_G0005174.1 mouse_genomes_project 11 21362760 21653767 + lincRNA lincRNA MGP_AJ_T0029979.1 MGP_AJ_G0018514.1 mouse_genomes_project 11 67482951 67488349 - protein_coding retained_intron MGP_AJ_T0029980.1 MGP_AJ_G0018514.1 mouse_genomes_project 11 67483033 67486987 - MGP_AJ_P0029980 protein_coding unknown_likely_coding MGP_AJ_T0029981.1 MGP_AJ_G0018514.1 mouse_genomes_project 11 67483519 67484324 - protein_coding processed_transcript MGP_AJ_T0029982.1 MGP_AJ_G0018514.1 mouse_genomes_project 11 67484516 67488455 - MGP_AJ_P0029982 protein_coding nonsense_mediated_decay MGP_AJ_T0029983.1 MGP_AJ_G0018514.1 mouse_genomes_project 11 67485189 67488348 - protein_coding processed_transcript MGP_AJ_T0029984.1 MGP_AJ_G0018514.1 mouse_genomes_project 11 67485197 67486919 - protein_coding processed_transcript MGP_AJ_T0029985.1 MGP_AJ_G0018514.1 mouse_genomes_project 11 67486168 67488347 - protein_coding processed_transcript MGP_AJ_T0029986.1 MGP_AJ_G0018514.1 mouse_genomes_project 11 67486215 67487762 - protein_coding processed_transcript MGP_AJ_T0029987.1 MGP_AJ_G0018514.1 mouse_genomes_project 11 67486283 67487254 - protein_coding retained_intron MGP_AJ_T0029988.1 MGP_AJ_G0018514.1 mouse_genomes_project 11 67486504 67487482 - protein_coding retained_intron MGP_AJ_T0030547.1 MGP_AJ_G0018651.1 mouse_genomes_project 11 72038979 72039927 + MGP_AJ_P0030547 Olfr401 protein_coding protein_coding MGP_AJ_T0100605.1 MGP_AJ_G0038571.1 mouse_genomes_project 11 69143427 69143561 - snoRNA snoRNA MGP_AJ_T0029106.1 MGP_AJ_G0018287.1 mouse_genomes_project 11 52178357 52250491 - MGP_AJ_P0029106 Cdc42se2 protein_coding protein_coding MGP_AJ_T0029107.1 MGP_AJ_G0018287.1 mouse_genomes_project 11 52184475 52250462 - MGP_AJ_P0029107 Cdc42se2 protein_coding protein_coding MGP_AJ_T0029108.1 MGP_AJ_G0018287.1 mouse_genomes_project 11 52201544 52250457 - Cdc42se2 protein_coding processed_transcript MGP_AJ_T0029109.1 MGP_AJ_G0018287.1 mouse_genomes_project 11 52201868 52250441 - Cdc42se2 protein_coding processed_transcript MGP_AJ_T0029110.1 MGP_AJ_G0018287.1 mouse_genomes_project 11 52202123 52222538 - Cdc42se2 protein_coding processed_transcript MGP_AJ_T0006229.1 MGP_AJ_G0005202.1 mouse_genomes_project 11 42285681 42300665 - Gm12159 lincRNA lincRNA MGP_AJ_T0030224.1 MGP_AJ_G0018566.1 mouse_genomes_project 11 68346102 68352037 + MGP_AJ_P0030224 Tm4sf5 protein_coding protein_coding MGP_AJ_T0030225.1 MGP_AJ_G0018566.1 mouse_genomes_project 11 68350828 68351741 + Tm4sf5 protein_coding processed_transcript MGP_AJ_T0030226.1 MGP_AJ_G0018566.1 mouse_genomes_project 11 68351064 68351826 + Tm4sf5 protein_coding retained_intron MGP_AJ_T0003319.1 MGP_AJ_G0003060.1 mouse_genomes_project 11 105662966 105663193 + antisense antisense MGP_AJ_T0009725.1 MGP_AJ_G0007847.1 mouse_genomes_project 11 83054419 83054486 + Gm23564 miRNA miRNA MGP_AJ_T0012760.1 MGP_AJ_G0010855.1 mouse_genomes_project 11 103760582 103762427 - processed_pseudogene processed_pseudogene MGP_AJ_T0029680.1 MGP_AJ_G0018444.1 mouse_genomes_project 11 62914091 62922065 - MGP_AJ_P0029680 1700086D15Rik protein_coding protein_coding MGP_AJ_T0029681.1 MGP_AJ_G0018444.1 mouse_genomes_project 11 62914091 62922066 - MGP_AJ_P0029681 1700086D15Rik protein_coding protein_coding MGP_AJ_T0098386.1 MGP_AJ_G0036370.1 mouse_genomes_project 11 68380779 68381357 - pseudogene pseudogene MGP_AJ_T0029137.1 MGP_AJ_G0018293.1 mouse_genomes_project 11 52521250 52551028 - MGP_AJ_P0029137 Ccdc69 protein_coding protein_coding MGP_AJ_T0029138.1 MGP_AJ_G0018293.1 mouse_genomes_project 11 52522250 52551052 - MGP_AJ_P0029138 Ccdc69 protein_coding protein_coding MGP_AJ_T0012662.1 MGP_AJ_G0010757.1 mouse_genomes_project 11 68268186 68268724 - processed_pseudogene processed_pseudogene MGP_AJ_T0009772.1 MGP_AJ_G0007894.1 mouse_genomes_project 11 118917164 118917262 - Mir338 miRNA miRNA MGP_AJ_T0032469.1 MGP_AJ_G0019161.1 mouse_genomes_project 11 99755223 99769215 - Becn1 protein_coding retained_intron MGP_AJ_T0032470.1 MGP_AJ_G0019161.1 mouse_genomes_project 11 99755223 99769223 - Becn1 protein_coding retained_intron MGP_AJ_T0032471.1 MGP_AJ_G0019161.1 mouse_genomes_project 11 99755223 99769249 - MGP_AJ_P0032471 Becn1 protein_coding nonsense_mediated_decay MGP_AJ_T0032472.1 MGP_AJ_G0019161.1 mouse_genomes_project 11 99755225 99769252 - MGP_AJ_P0032472 Becn1 protein_coding protein_coding MGP_AJ_T0032473.1 MGP_AJ_G0019161.1 mouse_genomes_project 11 99755837 99769200 - MGP_AJ_P0032473 Becn1 protein_coding nonsense_mediated_decay MGP_AJ_T0032474.1 MGP_AJ_G0019161.1 mouse_genomes_project 11 99755849 99761003 - Becn1 protein_coding retained_intron MGP_AJ_T0032475.1 MGP_AJ_G0019161.1 mouse_genomes_project 11 99756841 99759460 - Becn1 protein_coding processed_transcript MGP_AJ_T0032476.1 MGP_AJ_G0019161.1 mouse_genomes_project 11 99757445 99768700 - MGP_AJ_P0032476 Becn1 protein_coding protein_coding MGP_AJ_T0032477.1 MGP_AJ_G0019161.1 mouse_genomes_project 11 99758344 99763269 - MGP_AJ_P0032477 Becn1 protein_coding nonsense_mediated_decay MGP_AJ_T0032478.1 MGP_AJ_G0019161.1 mouse_genomes_project 11 99758460 99769201 - MGP_AJ_P0032478 Becn1 protein_coding nonsense_mediated_decay MGP_AJ_T0032479.1 MGP_AJ_G0019161.1 mouse_genomes_project 11 99758491 99762398 - Becn1 protein_coding retained_intron MGP_AJ_T0032480.1 MGP_AJ_G0019161.1 mouse_genomes_project 11 99762508 99769169 - MGP_AJ_P0032480 Becn1 protein_coding protein_coding MGP_AJ_T0032481.1 MGP_AJ_G0019161.1 mouse_genomes_project 11 99762868 99769212 - MGP_AJ_P0032481 Becn1 protein_coding protein_coding MGP_AJ_T0032482.1 MGP_AJ_G0019161.1 mouse_genomes_project 11 99763187 99769203 - Becn1 protein_coding retained_intron MGP_AJ_T0032483.1 MGP_AJ_G0019161.1 mouse_genomes_project 11 99765038 99769218 - Becn1 protein_coding processed_transcript MGP_AJ_T0032484.1 MGP_AJ_G0019161.1 mouse_genomes_project 11 99768423 99769204 - Becn1 protein_coding retained_intron MGP_AJ_T0100594.1 MGP_AJ_G0038560.1 mouse_genomes_project 11 56146830 56146962 + Gm22599 snoRNA snoRNA MGP_AJ_T0033748.1 MGP_AJ_G0019418.1 mouse_genomes_project 11 116652313 116654388 + MGP_AJ_P0033748 Tmc8 protein_coding protein_coding MGP_AJ_T0033749.1 MGP_AJ_G0019418.1 mouse_genomes_project 11 116652534 116663308 + MGP_AJ_P0033749 Tmc8 protein_coding protein_coding MGP_AJ_T0033750.1 MGP_AJ_G0019418.1 mouse_genomes_project 11 116652552 116663390 + MGP_AJ_P0033750 Tmc8 protein_coding protein_coding MGP_AJ_T0033751.1 MGP_AJ_G0019418.1 mouse_genomes_project 11 116652622 116663124 + MGP_AJ_P0033751 Tmc8 protein_coding protein_coding MGP_AJ_T0033752.1 MGP_AJ_G0019418.1 mouse_genomes_project 11 116652895 116663363 + MGP_AJ_P0033752 Tmc8 protein_coding protein_coding MGP_AJ_T0033753.1 MGP_AJ_G0019418.1 mouse_genomes_project 11 116661428 116662854 + Tmc8 protein_coding retained_intron MGP_AJ_T0012623.1 MGP_AJ_G0010718.1 mouse_genomes_project 11 54921581 54922319 + processed_pseudogene processed_pseudogene MGP_AJ_T0034034.1 MGP_AJ_G0019478.1 mouse_genomes_project 11 119469571 119482232 - MGP_AJ_P0034034 P4hb protein_coding protein_coding MGP_AJ_T0034035.1 MGP_AJ_G0019478.1 mouse_genomes_project 11 119469578 119470510 - P4hb protein_coding processed_transcript MGP_AJ_T0034036.1 MGP_AJ_G0019478.1 mouse_genomes_project 11 119470218 119481820 - MGP_AJ_P0034036 P4hb protein_coding protein_coding MGP_AJ_T0100611.1 MGP_AJ_G0038577.1 mouse_genomes_project 11 75188426 75188514 - Gm24989 snoRNA snoRNA MGP_AJ_T0099314.1 MGP_AJ_G0037280.1 mouse_genomes_project 11 17115803 17115906 - Gm26253 snRNA snRNA MGP_AJ_T0029117.1 MGP_AJ_G0018289.1 mouse_genomes_project 11 52328948 52333067 + MGP_AJ_P0029117 Hint1 protein_coding protein_coding MGP_AJ_T0029118.1 MGP_AJ_G0018289.1 mouse_genomes_project 11 52329046 52332873 + MGP_AJ_P0029118 Hint1 protein_coding protein_coding MGP_AJ_T0029411.1 MGP_AJ_G0018388.1 mouse_genomes_project 11 58061032 58120035 + MGP_AJ_P0029411 Myo15 protein_coding protein_coding MGP_AJ_T0029412.1 MGP_AJ_G0018388.1 mouse_genomes_project 11 58061032 58120035 + MGP_AJ_P0029412 Myo15 protein_coding protein_coding MGP_AJ_T0029413.1 MGP_AJ_G0018388.1 mouse_genomes_project 11 58061032 58120035 + MGP_AJ_P0029413 Myo15 protein_coding protein_coding MGP_AJ_T0029414.1 MGP_AJ_G0018388.1 mouse_genomes_project 11 58071509 58101132 + MGP_AJ_P0029414 Myo15 protein_coding protein_coding MGP_AJ_T0029415.1 MGP_AJ_G0018388.1 mouse_genomes_project 11 58100953 58113829 + Myo15 protein_coding retained_intron MGP_AJ_T0006182.1 MGP_AJ_G0005161.1 mouse_genomes_project 11 16509244 16510545 - Gm12027 lincRNA lincRNA MGP_AJ_T0029312.1 MGP_AJ_G0018368.1 mouse_genomes_project 11 57029298 57040645 - MGP_AJ_P0029312 Zfp867 protein_coding protein_coding MGP_AJ_T0012591.1 MGP_AJ_G0010686.1 mouse_genomes_project 11 45873251 45875099 - processed_pseudogene processed_pseudogene MGP_AJ_T0031150.1 MGP_AJ_G0018795.1 mouse_genomes_project 11 80762557 80808854 - MGP_AJ_P0031150 Cct6b protein_coding protein_coding MGP_AJ_T0031151.1 MGP_AJ_G0018795.1 mouse_genomes_project 11 80762557 80808869 - MGP_AJ_P0031151 Cct6b protein_coding protein_coding MGP_AJ_T0032575.1 MGP_AJ_G0019182.1 mouse_genomes_project 11 100472415 100477694 - MGP_AJ_P0032575 Sost protein_coding protein_coding MGP_AJ_T0029484.1 MGP_AJ_G0018405.1 mouse_genomes_project 11 58996949 59039359 - MGP_AJ_P0029484 Slc47a2 protein_coding protein_coding MGP_AJ_T0029485.1 MGP_AJ_G0018405.1 mouse_genomes_project 11 58999244 59039349 - MGP_AJ_P0029485 Slc47a2 protein_coding protein_coding MGP_AJ_T0029486.1 MGP_AJ_G0018405.1 mouse_genomes_project 11 59033641 59039083 - Slc47a2 protein_coding processed_transcript MGP_AJ_T0030003.1 MGP_AJ_G0018518.1 mouse_genomes_project 11 67503198 67512767 - MGP_AJ_P0030003 Tnfsf12 protein_coding protein_coding MGP_AJ_T0030004.1 MGP_AJ_G0018518.1 mouse_genomes_project 11 67504288 67512439 - MGP_AJ_P0030004 Tnfsf12 protein_coding protein_coding MGP_AJ_T0030789.1 MGP_AJ_G0018708.1 mouse_genomes_project 11 74938726 74971385 + MGP_AJ_P0030789 protein_coding unknown_likely_coding MGP_AJ_T0030790.1 MGP_AJ_G0018708.1 mouse_genomes_project 11 74949239 74953011 + MGP_AJ_P0030790 protein_coding protein_coding MGP_AJ_T0030791.1 MGP_AJ_G0018708.1 mouse_genomes_project 11 74958061 74962125 + protein_coding retained_intron MGP_AJ_T0029999.1 MGP_AJ_G0018517.1 mouse_genomes_project 11 67499794 67502503 - MGP_AJ_P0029999 Tnfsf13 protein_coding protein_coding MGP_AJ_T0030000.1 MGP_AJ_G0018517.1 mouse_genomes_project 11 67499880 67502733 - MGP_AJ_P0030000 Tnfsf13 protein_coding protein_coding MGP_AJ_T0003307.1 MGP_AJ_G0003049.1 mouse_genomes_project 11 101896728 101902284 + Arhgap27os3 antisense antisense MGP_AJ_T0032125.1 MGP_AJ_G0019039.1 mouse_genomes_project 11 97097294 97109987 + Thra protein_coding processed_transcript MGP_AJ_T0032126.1 MGP_AJ_G0019039.1 mouse_genomes_project 11 97097457 97110246 + Thra protein_coding processed_transcript MGP_AJ_T0032127.1 MGP_AJ_G0019039.1 mouse_genomes_project 11 97097560 97110050 + Thra protein_coding processed_transcript MGP_AJ_T0032128.1 MGP_AJ_G0019039.1 mouse_genomes_project 11 97098467 97114293 + Thra protein_coding processed_transcript MGP_AJ_T0032129.1 MGP_AJ_G0019039.1 mouse_genomes_project 11 97098467 97125601 + MGP_AJ_P0032129 Thra protein_coding protein_coding MGP_AJ_T0032130.1 MGP_AJ_G0019039.1 mouse_genomes_project 11 97098529 97121718 + MGP_AJ_P0032130 Thra protein_coding protein_coding MGP_AJ_T0032131.1 MGP_AJ_G0019039.1 mouse_genomes_project 11 97098814 97113593 + MGP_AJ_P0032131 Thra protein_coding protein_coding MGP_AJ_T0032132.1 MGP_AJ_G0019039.1 mouse_genomes_project 11 97100889 97110385 + Thra protein_coding processed_transcript MGP_AJ_T0032133.1 MGP_AJ_G0019039.1 mouse_genomes_project 11 97110193 97124998 + MGP_AJ_P0032133 Thra protein_coding protein_coding MGP_AJ_T0033206.1 MGP_AJ_G0019310.1 mouse_genomes_project 11 108792300 108859023 - MGP_AJ_P0033206 Abca9 protein_coding protein_coding MGP_AJ_T0033207.1 MGP_AJ_G0019310.1 mouse_genomes_project 11 108847376 108858882 - Abca9 protein_coding processed_transcript MGP_AJ_T0031029.1 MGP_AJ_G0018761.1 mouse_genomes_project 11 77233672 77250712 - MGP_AJ_P0031029 Wsb1 protein_coding protein_coding MGP_AJ_T0031030.1 MGP_AJ_G0018761.1 mouse_genomes_project 11 77233688 77237325 - Wsb1 protein_coding retained_intron MGP_AJ_T0031031.1 MGP_AJ_G0018761.1 mouse_genomes_project 11 77234576 77242959 - MGP_AJ_P0031031 Wsb1 protein_coding nonsense_mediated_decay MGP_AJ_T0031032.1 MGP_AJ_G0018761.1 mouse_genomes_project 11 77234607 77237250 - Wsb1 protein_coding processed_transcript MGP_AJ_T0031033.1 MGP_AJ_G0018761.1 mouse_genomes_project 11 77237588 77250710 - MGP_AJ_P0031033 Wsb1 protein_coding nonsense_mediated_decay MGP_AJ_T0031034.1 MGP_AJ_G0018761.1 mouse_genomes_project 11 77237700 77250511 - MGP_AJ_P0031034 Wsb1 protein_coding nonsense_mediated_decay MGP_AJ_T0031035.1 MGP_AJ_G0018761.1 mouse_genomes_project 11 77238407 77247065 - Wsb1 protein_coding retained_intron MGP_AJ_T0012773.1 MGP_AJ_G0010868.1 mouse_genomes_project 11 110773220 110774036 - processed_pseudogene processed_pseudogene MGP_AJ_T0102254.1 MGP_AJ_G0039997.1 mouse_genomes_project 11 93087434 93088171 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0012686.1 MGP_AJ_G0010781.1 mouse_genomes_project 11 75595408 75596175 - processed_pseudogene processed_pseudogene MGP_AJ_T0029665.1 MGP_AJ_G0018439.1 mouse_genomes_project 11 61712485 61835040 - MGP_AJ_P0029665 Cox10 protein_coding protein_coding MGP_AJ_T0029666.1 MGP_AJ_G0018439.1 mouse_genomes_project 11 61826972 61835042 - Cox10 protein_coding processed_transcript MGP_AJ_T0012533.1 MGP_AJ_G0010628.1 mouse_genomes_project 11 23338575 23339870 + processed_pseudogene processed_pseudogene MGP_AJ_T0027758.1 MGP_AJ_G0017950.1 mouse_genomes_project 11 1103563 1125737 + MGP_AJ_P0027758 Sf3a1 protein_coding protein_coding MGP_AJ_T0027759.1 MGP_AJ_G0017950.1 mouse_genomes_project 11 1103568 1116306 + Sf3a1 protein_coding processed_transcript MGP_AJ_T0027760.1 MGP_AJ_G0017950.1 mouse_genomes_project 11 1103568 1115125 + Sf3a1 protein_coding retained_intron MGP_AJ_T0027761.1 MGP_AJ_G0017950.1 mouse_genomes_project 11 1120743 1122615 + Sf3a1 protein_coding retained_intron MGP_AJ_T0028784.1 MGP_AJ_G0018207.1 mouse_genomes_project 11 47176718 47249575 + MGP_AJ_P0028784 Rasgef1c protein_coding protein_coding MGP_AJ_T0028785.1 MGP_AJ_G0018207.1 mouse_genomes_project 11 47176738 47249568 + MGP_AJ_P0028785 Rasgef1c protein_coding protein_coding MGP_AJ_T0028786.1 MGP_AJ_G0018207.1 mouse_genomes_project 11 47177044 47250347 + MGP_AJ_P0028786 Rasgef1c protein_coding protein_coding MGP_AJ_T0028787.1 MGP_AJ_G0018207.1 mouse_genomes_project 11 47233137 47245103 + Rasgef1c protein_coding processed_transcript MGP_AJ_T0102248.1 MGP_AJ_G0039991.1 mouse_genomes_project 11 81818121 81818265 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0012753.1 MGP_AJ_G0010848.1 mouse_genomes_project 11 102157814 102158678 - processed_pseudogene processed_pseudogene MGP_AJ_T0099349.1 MGP_AJ_G0037315.1 mouse_genomes_project 11 77646888 77646996 - Gm24887 snRNA snRNA MGP_AJ_T0099312.1 MGP_AJ_G0037278.1 mouse_genomes_project 11 13631366 13631473 - Gm25698 snRNA snRNA MGP_AJ_T0100613.1 MGP_AJ_G0038579.1 mouse_genomes_project 11 76140085 76140150 - Snord42a snoRNA snoRNA MGP_AJ_T0030339.1 MGP_AJ_G0018587.1 mouse_genomes_project 11 68826216 68833837 + MGP_AJ_P0030339 Rpain protein_coding protein_coding MGP_AJ_T0030340.1 MGP_AJ_G0018587.1 mouse_genomes_project 11 68826230 68827923 + MGP_AJ_P0030340 Rpain protein_coding nonsense_mediated_decay MGP_AJ_T0030341.1 MGP_AJ_G0018587.1 mouse_genomes_project 11 68826483 68830166 + Rpain protein_coding retained_intron MGP_AJ_T0030342.1 MGP_AJ_G0018587.1 mouse_genomes_project 11 68826489 68828353 + Rpain protein_coding retained_intron MGP_AJ_T0030343.1 MGP_AJ_G0018587.1 mouse_genomes_project 11 68826494 68829495 + Rpain protein_coding retained_intron MGP_AJ_T0030344.1 MGP_AJ_G0018587.1 mouse_genomes_project 11 68826510 68833691 + MGP_AJ_P0030344 Rpain protein_coding protein_coding MGP_AJ_T0030345.1 MGP_AJ_G0018587.1 mouse_genomes_project 11 68826510 68833691 + MGP_AJ_P0030345 Rpain protein_coding nonsense_mediated_decay MGP_AJ_T0030346.1 MGP_AJ_G0018587.1 mouse_genomes_project 11 68826510 68833691 + MGP_AJ_P0030346 Rpain protein_coding protein_coding MGP_AJ_T0030347.1 MGP_AJ_G0018587.1 mouse_genomes_project 11 68826510 68833691 + MGP_AJ_P0030347 Rpain protein_coding protein_coding MGP_AJ_T0030348.1 MGP_AJ_G0018587.1 mouse_genomes_project 11 68826510 68833691 + MGP_AJ_P0030348 Rpain protein_coding protein_coding MGP_AJ_T0030349.1 MGP_AJ_G0018587.1 mouse_genomes_project 11 68826532 68830433 + Rpain protein_coding retained_intron MGP_AJ_T0030350.1 MGP_AJ_G0018587.1 mouse_genomes_project 11 68828806 68833809 + Rpain protein_coding retained_intron MGP_AJ_T0030351.1 MGP_AJ_G0018587.1 mouse_genomes_project 11 68830743 68833805 + Rpain protein_coding retained_intron MGP_AJ_T0100597.1 MGP_AJ_G0038563.1 mouse_genomes_project 11 60336267 60336339 + Snord49a snoRNA snoRNA MGP_AJ_T0003252.1 MGP_AJ_G0003006.1 mouse_genomes_project 11 85292262 85297600 - Gm11491 antisense antisense MGP_AJ_T0003253.1 MGP_AJ_G0003006.1 mouse_genomes_project 11 85292480 85297653 - Gm11491 antisense antisense MGP_AJ_T0017216.1 MGP_AJ_G0015161.1 mouse_genomes_project 11 73719259 73749648 + Gm12339 processed_transcript antisense MGP_AJ_T0017217.1 MGP_AJ_G0015161.1 mouse_genomes_project 11 73719711 73749666 + Gm12339 processed_transcript processed_transcript MGP_AJ_T0033290.1 MGP_AJ_G0019329.1 mouse_genomes_project 11 113569294 113573951 - Btbd17 protein_coding processed_transcript MGP_AJ_T0033291.1 MGP_AJ_G0019329.1 mouse_genomes_project 11 113569294 113573988 - Btbd17 protein_coding processed_transcript MGP_AJ_T0033292.1 MGP_AJ_G0019329.1 mouse_genomes_project 11 113569294 113573975 - MGP_AJ_P0033292 Btbd17 protein_coding protein_coding MGP_AJ_T0033293.1 MGP_AJ_G0019329.1 mouse_genomes_project 11 113570183 113574023 - Btbd17 protein_coding processed_transcript MGP_AJ_T0033294.1 MGP_AJ_G0019329.1 mouse_genomes_project 11 113570362 113573977 - Btbd17 protein_coding processed_transcript MGP_AJ_T0033295.1 MGP_AJ_G0019329.1 mouse_genomes_project 11 113570509 113573951 - Btbd17 protein_coding processed_transcript MGP_AJ_T0033296.1 MGP_AJ_G0019329.1 mouse_genomes_project 11 113570546 113573970 - Btbd17 protein_coding processed_transcript MGP_AJ_T0102226.1 MGP_AJ_G0039969.1 mouse_genomes_project 11 4986369 4988012 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0031056.1 MGP_AJ_G0018769.1 mouse_genomes_project 11 77945587 77977320 - MGP_AJ_P0031056 Utp6 protein_coding protein_coding MGP_AJ_T0031057.1 MGP_AJ_G0018769.1 mouse_genomes_project 11 77947330 77977331 - MGP_AJ_P0031057 Utp6 protein_coding protein_coding MGP_AJ_T0031058.1 MGP_AJ_G0018769.1 mouse_genomes_project 11 77949227 77956823 - Utp6 protein_coding retained_intron MGP_AJ_T0031059.1 MGP_AJ_G0018769.1 mouse_genomes_project 11 77973469 77977308 - Utp6 protein_coding retained_intron MGP_AJ_T0003219.1 MGP_AJ_G0002980.1 mouse_genomes_project 11 67203046 67204235 + Kdm6bos antisense antisense MGP_AJ_T0100599.1 MGP_AJ_G0038565.1 mouse_genomes_project 11 60521250 60521393 + Gm24151 snoRNA snoRNA MGP_AJ_T0030708.1 MGP_AJ_G0018689.1 mouse_genomes_project 11 73692111 73720541 - MGP_AJ_P0030708 Doc2b protein_coding protein_coding MGP_AJ_T0033368.1 MGP_AJ_G0019352.1 mouse_genomes_project 11 114186687 114201999 + MGP_AJ_P0033368 Cdr2l protein_coding protein_coding MGP_AJ_T0030404.1 MGP_AJ_G0018599.1 mouse_genomes_project 11 70096391 70099280 - MGP_AJ_P0030404 Gm43951 protein_coding protein_coding MGP_AJ_T0033971.1 MGP_AJ_G0019464.1 mouse_genomes_project 11 119268457 119275092 + MGP_AJ_P0033971 Fscn2 protein_coding protein_coding MGP_AJ_T0033972.1 MGP_AJ_G0019464.1 mouse_genomes_project 11 119273465 119274872 + Fscn2 protein_coding processed_transcript MGP_AJ_T0033973.1 MGP_AJ_G0019464.1 mouse_genomes_project 11 119273636 119274744 + Fscn2 protein_coding processed_transcript MGP_AJ_T0029933.1 MGP_AJ_G0018502.1 mouse_genomes_project 11 67200037 67215214 - MGP_AJ_P0029933 Kdm6b protein_coding protein_coding MGP_AJ_T0029934.1 MGP_AJ_G0018502.1 mouse_genomes_project 11 67204812 67205750 - Kdm6b protein_coding processed_transcript MGP_AJ_T0012698.1 MGP_AJ_G0010793.1 mouse_genomes_project 11 79090035 79092013 + processed_pseudogene processed_pseudogene MGP_AJ_T0028451.1 MGP_AJ_G0018106.1 mouse_genomes_project 11 29334179 29334942 + MGP_AJ_P0028451 protein_coding protein_coding MGP_AJ_T0028452.1 MGP_AJ_G0018106.1 mouse_genomes_project 11 29334215 29339854 + protein_coding retained_intron MGP_AJ_T0027958.1 MGP_AJ_G0017995.1 mouse_genomes_project 11 3382353 3386649 + MGP_AJ_P0027958 Ppia protein_coding protein_coding MGP_AJ_T0027959.1 MGP_AJ_G0017995.1 mouse_genomes_project 11 3382778 3385349 + Ppia protein_coding retained_intron MGP_AJ_T0027960.1 MGP_AJ_G0017995.1 mouse_genomes_project 11 3382780 3386647 + Ppia protein_coding processed_transcript MGP_AJ_T0027961.1 MGP_AJ_G0017995.1 mouse_genomes_project 11 3382786 3386520 + Ppia protein_coding retained_intron MGP_AJ_T0027962.1 MGP_AJ_G0017995.1 mouse_genomes_project 11 3382786 3386644 + Ppia protein_coding retained_intron MGP_AJ_T0027896.1 MGP_AJ_G0017981.1 mouse_genomes_project 11 2795270 2805193 - MGP_AJ_P0027896 Polm protein_coding protein_coding MGP_AJ_T0027897.1 MGP_AJ_G0017981.1 mouse_genomes_project 11 2795271 2805420 - MGP_AJ_P0027897 Polm protein_coding protein_coding MGP_AJ_T0027898.1 MGP_AJ_G0017981.1 mouse_genomes_project 11 2796625 2797611 - Polm protein_coding processed_transcript MGP_AJ_T0027899.1 MGP_AJ_G0017981.1 mouse_genomes_project 11 2802204 2803890 - Polm protein_coding processed_transcript MGP_AJ_T0027900.1 MGP_AJ_G0017981.1 mouse_genomes_project 11 2803682 2805156 - Polm protein_coding processed_transcript MGP_AJ_T0027901.1 MGP_AJ_G0017981.1 mouse_genomes_project 11 2803705 2805197 - Polm protein_coding processed_transcript MGP_AJ_T0006321.1 MGP_AJ_G0005271.1 mouse_genomes_project 11 93888690 93895870 + Gm11528 lincRNA lincRNA MGP_AJ_T0033498.1 MGP_AJ_G0019372.1 mouse_genomes_project 11 114685700 114720155 + MGP_AJ_P0033498 Myo15b protein_coding protein_coding MGP_AJ_T0033499.1 MGP_AJ_G0019372.1 mouse_genomes_project 11 114705035 114707745 + Myo15b protein_coding processed_transcript MGP_AJ_T0033500.1 MGP_AJ_G0019372.1 mouse_genomes_project 11 114705053 114708851 + MGP_AJ_P0033500 Myo15b protein_coding protein_coding MGP_AJ_T0033501.1 MGP_AJ_G0019372.1 mouse_genomes_project 11 114708014 114715043 + MGP_AJ_P0033501 Myo15b protein_coding protein_coding MGP_AJ_T0033502.1 MGP_AJ_G0019372.1 mouse_genomes_project 11 114714035 114715044 + MGP_AJ_P0033502 Myo15b protein_coding protein_coding MGP_AJ_T0033503.1 MGP_AJ_G0019372.1 mouse_genomes_project 11 114714404 114720151 + Myo15b protein_coding retained_intron MGP_AJ_T0033504.1 MGP_AJ_G0019372.1 mouse_genomes_project 11 114715198 114720166 + MGP_AJ_P0033504 Myo15b protein_coding protein_coding MGP_AJ_T0033505.1 MGP_AJ_G0019372.1 mouse_genomes_project 11 114717801 114718732 + Myo15b protein_coding retained_intron MGP_AJ_T0011795.1 MGP_AJ_G0009916.1 mouse_genomes_project 11 71845267 71849252 + MGP_AJ_P0011795 Olfr396-ps1 polymorphic_pseudogene polymorphic_pseudogene MGP_AJ_T0011796.1 MGP_AJ_G0009916.1 mouse_genomes_project 11 71848532 71849165 + MGP_AJ_P0011796 Olfr396-ps1 polymorphic_pseudogene protein_coding MGP_AJ_T0099345.1 MGP_AJ_G0037311.1 mouse_genomes_project 11 74913975 74914125 + Gm22611 snRNA snRNA MGP_AJ_T0028428.1 MGP_AJ_G0018102.1 mouse_genomes_project 11 29272362 29314838 - MGP_AJ_P0028428 Nprl3 protein_coding nonsense_mediated_decay MGP_AJ_T0028433.1 MGP_AJ_G0018102.1 mouse_genomes_project 11 29277997 29303190 - Nprl3 protein_coding processed_transcript MGP_AJ_T0028434.1 MGP_AJ_G0018102.1 mouse_genomes_project 11 29277997 29314838 - MGP_AJ_P0028434 Nprl3 protein_coding nonsense_mediated_decay MGP_AJ_T0028435.1 MGP_AJ_G0018102.1 mouse_genomes_project 11 29278694 29314855 - MGP_AJ_P0028435 Nprl3 protein_coding protein_coding MGP_AJ_T0028436.1 MGP_AJ_G0018102.1 mouse_genomes_project 11 29278785 29314807 - MGP_AJ_P0028436 Nprl3 protein_coding nonsense_mediated_decay MGP_AJ_T0028437.1 MGP_AJ_G0018102.1 mouse_genomes_project 11 29279667 29281111 - Nprl3 protein_coding retained_intron MGP_AJ_T0028438.1 MGP_AJ_G0018102.1 mouse_genomes_project 11 29279675 29314778 - MGP_AJ_P0028438 Nprl3 protein_coding nonsense_mediated_decay MGP_AJ_T0028439.1 MGP_AJ_G0018102.1 mouse_genomes_project 11 29279683 29314696 - MGP_AJ_P0028439 Nprl3 protein_coding protein_coding MGP_AJ_T0028440.1 MGP_AJ_G0018102.1 mouse_genomes_project 11 29283553 29286619 - Nprl3 protein_coding retained_intron MGP_AJ_T0028441.1 MGP_AJ_G0018102.1 mouse_genomes_project 11 29283599 29284722 - Nprl3 protein_coding retained_intron MGP_AJ_T0028442.1 MGP_AJ_G0018102.1 mouse_genomes_project 11 29286477 29300833 - Nprl3 protein_coding retained_intron MGP_AJ_T0028443.1 MGP_AJ_G0018102.1 mouse_genomes_project 11 29286540 29314807 - MGP_AJ_P0028443 Nprl3 protein_coding nonsense_mediated_decay MGP_AJ_T0028444.1 MGP_AJ_G0018102.1 mouse_genomes_project 11 29288339 29296946 - Nprl3 protein_coding processed_transcript MGP_AJ_T0028445.1 MGP_AJ_G0018102.1 mouse_genomes_project 11 29294523 29297046 - Nprl3 protein_coding processed_transcript MGP_AJ_T0028446.1 MGP_AJ_G0018102.1 mouse_genomes_project 11 29296930 29314764 - MGP_AJ_P0028446 Nprl3 protein_coding protein_coding MGP_AJ_T0028447.1 MGP_AJ_G0018102.1 mouse_genomes_project 11 29310036 29314700 - Nprl3 protein_coding processed_transcript MGP_AJ_T0017191.1 MGP_AJ_G0015147.1 mouse_genomes_project 11 56507156 56519457 - 2310058D17Rik processed_transcript processed_transcript MGP_AJ_T0028756.1 MGP_AJ_G0018195.1 mouse_genomes_project 11 46537531 46539566 + MGP_AJ_P0028756 protein_coding protein_coding MGP_AJ_T0027703.1 MGP_AJ_G0017936.1 mouse_genomes_project 11 631391 794451 - MGP_AJ_P0027703 Osbp2 protein_coding protein_coding MGP_AJ_T0027704.1 MGP_AJ_G0017936.1 mouse_genomes_project 11 631393 794301 - MGP_AJ_P0027704 Osbp2 protein_coding protein_coding MGP_AJ_T0027705.1 MGP_AJ_G0017936.1 mouse_genomes_project 11 631578 649849 - MGP_AJ_P0027705 Osbp2 protein_coding protein_coding MGP_AJ_T0027706.1 MGP_AJ_G0017936.1 mouse_genomes_project 11 645485 700434 - MGP_AJ_P0027706 Osbp2 protein_coding protein_coding MGP_AJ_T0027707.1 MGP_AJ_G0017936.1 mouse_genomes_project 11 645545 701385 - MGP_AJ_P0027707 Osbp2 protein_coding protein_coding MGP_AJ_T0027708.1 MGP_AJ_G0017936.1 mouse_genomes_project 11 652034 794451 - Osbp2 protein_coding processed_transcript MGP_AJ_T0028400.1 MGP_AJ_G0018095.1 mouse_genomes_project 11 28708446 28714953 - MGP_AJ_P0028400 Bod1 protein_coding protein_coding MGP_AJ_T0028401.1 MGP_AJ_G0018095.1 mouse_genomes_project 11 28709752 28714795 - MGP_AJ_P0028401 Bod1 protein_coding protein_coding MGP_AJ_T0030751.1 MGP_AJ_G0018699.1 mouse_genomes_project 11 74203922 74345160 - MGP_AJ_P0030751 Nxn protein_coding protein_coding MGP_AJ_T0030752.1 MGP_AJ_G0018699.1 mouse_genomes_project 11 74304152 74345088 - Nxn protein_coding processed_transcript MGP_AJ_T0033970.1 MGP_AJ_G0019463.1 mouse_genomes_project 11 119255601 119258114 + MGP_AJ_P0033970 0610009L18Rik protein_coding protein_coding MGP_AJ_T0031921.1 MGP_AJ_G0018993.1 mouse_genomes_project 11 95446896 95460432 - MGP_AJ_P0031921 Tbkbp1 protein_coding protein_coding MGP_AJ_T0031922.1 MGP_AJ_G0018993.1 mouse_genomes_project 11 95446898 95460432 - MGP_AJ_P0031922 Tbkbp1 protein_coding protein_coding MGP_AJ_T0031923.1 MGP_AJ_G0018993.1 mouse_genomes_project 11 95446902 95460766 - MGP_AJ_P0031923 Tbkbp1 protein_coding protein_coding MGP_AJ_T0031924.1 MGP_AJ_G0018993.1 mouse_genomes_project 11 95447824 95461756 - MGP_AJ_P0031924 Tbkbp1 protein_coding protein_coding MGP_AJ_T0031925.1 MGP_AJ_G0018993.1 mouse_genomes_project 11 95449131 95460768 - MGP_AJ_P0031925 Tbkbp1 protein_coding nonsense_mediated_decay MGP_AJ_T0031926.1 MGP_AJ_G0018993.1 mouse_genomes_project 11 95459348 95462215 - MGP_AJ_P0031926 Tbkbp1 protein_coding protein_coding MGP_AJ_T0028109.1 MGP_AJ_G0018031.1 mouse_genomes_project 11 14104285 14112406 - MGP_AJ_P0028109 Pno1 protein_coding protein_coding MGP_AJ_T0028110.1 MGP_AJ_G0018031.1 mouse_genomes_project 11 14109686 14111897 - Pno1 protein_coding processed_transcript MGP_AJ_T0030060.1 MGP_AJ_G0018535.1 mouse_genomes_project 11 67722749 67725077 + Neurl4 protein_coding processed_transcript MGP_AJ_T0030061.1 MGP_AJ_G0018535.1 mouse_genomes_project 11 67723493 67735187 + MGP_AJ_P0030061 Neurl4 protein_coding protein_coding MGP_AJ_T0030062.1 MGP_AJ_G0018535.1 mouse_genomes_project 11 67723493 67735187 + MGP_AJ_P0030062 Neurl4 protein_coding protein_coding MGP_AJ_T0030063.1 MGP_AJ_G0018535.1 mouse_genomes_project 11 67723493 67735187 + MGP_AJ_P0030063 Neurl4 protein_coding protein_coding MGP_AJ_T0030064.1 MGP_AJ_G0018535.1 mouse_genomes_project 11 67723568 67735492 + MGP_AJ_P0030064 Neurl4 protein_coding protein_coding MGP_AJ_T0030065.1 MGP_AJ_G0018535.1 mouse_genomes_project 11 67723704 67727275 + Neurl4 protein_coding retained_intron MGP_AJ_T0030066.1 MGP_AJ_G0018535.1 mouse_genomes_project 11 67723833 67725592 + Neurl4 protein_coding processed_transcript MGP_AJ_T0030067.1 MGP_AJ_G0018535.1 mouse_genomes_project 11 67725069 67735003 + MGP_AJ_P0030067 Neurl4 protein_coding nonsense_mediated_decay MGP_AJ_T0030068.1 MGP_AJ_G0018535.1 mouse_genomes_project 11 67725712 67730413 + MGP_AJ_P0030068 Neurl4 protein_coding nonsense_mediated_decay MGP_AJ_T0030069.1 MGP_AJ_G0018535.1 mouse_genomes_project 11 67728941 67730199 + Neurl4 protein_coding retained_intron MGP_AJ_T0030070.1 MGP_AJ_G0018535.1 mouse_genomes_project 11 67730312 67731996 + Neurl4 protein_coding retained_intron MGP_AJ_T0030071.1 MGP_AJ_G0018535.1 mouse_genomes_project 11 67730653 67732537 + Neurl4 protein_coding retained_intron MGP_AJ_T0030072.1 MGP_AJ_G0018535.1 mouse_genomes_project 11 67732707 67734824 + MGP_AJ_P0030072 Neurl4 protein_coding protein_coding MGP_AJ_T0030588.1 MGP_AJ_G0018665.1 mouse_genomes_project 11 72746889 72761691 + MGP_AJ_P0030588 Mnt protein_coding protein_coding MGP_AJ_T0030589.1 MGP_AJ_G0018665.1 mouse_genomes_project 11 72752291 72753689 + Mnt protein_coding retained_intron MGP_AJ_T0030590.1 MGP_AJ_G0018665.1 mouse_genomes_project 11 72753433 72759741 + MGP_AJ_P0030590 Mnt protein_coding protein_coding MGP_AJ_T0031559.1 MGP_AJ_G0018899.1 mouse_genomes_project 11 87300331 87317998 + MGP_AJ_P0031559 Gm525 protein_coding protein_coding MGP_AJ_T0031560.1 MGP_AJ_G0018899.1 mouse_genomes_project 11 87301510 87317923 + MGP_AJ_P0031560 Gm525 protein_coding protein_coding MGP_AJ_T0030009.1 MGP_AJ_G0018520.1 mouse_genomes_project 11 67581360 67583439 - MGP_AJ_P0030009 Slc35g3 protein_coding protein_coding MGP_AJ_T0003250.1 MGP_AJ_G0003005.1 mouse_genomes_project 11 84367744 84378232 + Brip1os antisense antisense MGP_AJ_T0003251.1 MGP_AJ_G0003005.1 mouse_genomes_project 11 84367757 84472908 + Brip1os antisense antisense MGP_AJ_T0032199.1 MGP_AJ_G0019058.1 mouse_genomes_project 11 97732541 97742515 - MGP_AJ_P0032199 Krt28 protein_coding protein_coding MGP_AJ_T0100589.1 MGP_AJ_G0038555.1 mouse_genomes_project 11 45927099 45927167 + Snord95 snoRNA snoRNA MGP_AJ_T0029354.1 MGP_AJ_G0018380.1 mouse_genomes_project 11 57554120 57630951 - MGP_AJ_P0029354 Pemt protein_coding protein_coding MGP_AJ_T0029355.1 MGP_AJ_G0018380.1 mouse_genomes_project 11 57554124 57555020 - Pemt protein_coding processed_transcript MGP_AJ_T0029356.1 MGP_AJ_G0018380.1 mouse_genomes_project 11 57554337 57621810 - Pemt protein_coding processed_transcript MGP_AJ_T0029357.1 MGP_AJ_G0018380.1 mouse_genomes_project 11 57554354 57625033 - MGP_AJ_P0029357 Pemt protein_coding protein_coding MGP_AJ_T0029358.1 MGP_AJ_G0018380.1 mouse_genomes_project 11 57557968 57631005 - MGP_AJ_P0029358 Pemt protein_coding protein_coding MGP_AJ_T0029359.1 MGP_AJ_G0018380.1 mouse_genomes_project 11 57560682 57606304 - Pemt protein_coding processed_transcript MGP_AJ_T0029360.1 MGP_AJ_G0018380.1 mouse_genomes_project 11 57560702 57569890 - Pemt protein_coding processed_transcript MGP_AJ_T0029361.1 MGP_AJ_G0018380.1 mouse_genomes_project 11 57629052 57631001 - Pemt protein_coding processed_transcript MGP_AJ_T0031199.1 MGP_AJ_G0018809.1 mouse_genomes_project 11 81300649 81324242 + MGP_AJ_P0031199 Slfn3 protein_coding protein_coding MGP_AJ_T0030657.1 MGP_AJ_G0018680.1 mouse_genomes_project 11 73402546 73425979 + MGP_AJ_P0030657 Prpf8 protein_coding protein_coding MGP_AJ_T0030658.1 MGP_AJ_G0018680.1 mouse_genomes_project 11 73402550 73425981 + MGP_AJ_P0030658 Prpf8 protein_coding protein_coding MGP_AJ_T0030659.1 MGP_AJ_G0018680.1 mouse_genomes_project 11 73402585 73411540 + MGP_AJ_P0030659 Prpf8 protein_coding protein_coding MGP_AJ_T0030660.1 MGP_AJ_G0018680.1 mouse_genomes_project 11 73407965 73409655 + Prpf8 protein_coding retained_intron MGP_AJ_T0009770.1 MGP_AJ_G0007892.1 mouse_genomes_project 11 118050175 118050237 - Mir6934 miRNA miRNA MGP_AJ_T0030295.1 MGP_AJ_G0018580.1 mouse_genomes_project 11 68524033 68540938 - MGP_AJ_P0030295 Camta2 protein_coding nonsense_mediated_decay MGP_AJ_T0030296.1 MGP_AJ_G0018580.1 mouse_genomes_project 11 68524033 68542502 - MGP_AJ_P0030296 Camta2 protein_coding protein_coding MGP_AJ_T0030297.1 MGP_AJ_G0018580.1 mouse_genomes_project 11 68524033 68542492 - MGP_AJ_P0030297 Camta2 protein_coding protein_coding MGP_AJ_T0030298.1 MGP_AJ_G0018580.1 mouse_genomes_project 11 68524033 68542492 - MGP_AJ_P0030298 Camta2 protein_coding protein_coding MGP_AJ_T0030299.1 MGP_AJ_G0018580.1 mouse_genomes_project 11 68524033 68542521 - MGP_AJ_P0030299 Camta2 protein_coding protein_coding MGP_AJ_T0030300.1 MGP_AJ_G0018580.1 mouse_genomes_project 11 68524033 68542654 - MGP_AJ_P0030300 Camta2 protein_coding protein_coding MGP_AJ_T0030301.1 MGP_AJ_G0018580.1 mouse_genomes_project 11 68524034 68542504 - MGP_AJ_P0030301 Camta2 protein_coding protein_coding MGP_AJ_T0030302.1 MGP_AJ_G0018580.1 mouse_genomes_project 11 68524036 68538325 - Camta2 protein_coding retained_intron MGP_AJ_T0030303.1 MGP_AJ_G0018580.1 mouse_genomes_project 11 68540462 68542497 - Camta2 protein_coding retained_intron MGP_AJ_T0031839.1 MGP_AJ_G0018973.1 mouse_genomes_project 11 94587931 94590715 + Hoxb5 protein_coding retained_intron MGP_AJ_T0031840.1 MGP_AJ_G0018973.1 mouse_genomes_project 11 94588107 94590714 + MGP_AJ_P0031840 Hoxb5 protein_coding protein_coding MGP_AJ_T0032219.1 MGP_AJ_G0019076.1 mouse_genomes_project 11 98003612 98004627 - MGP_AJ_P0032219 Krtap4-1 protein_coding protein_coding MGP_AJ_T0032069.1 MGP_AJ_G0019025.1 mouse_genomes_project 11 96733174 96734906 + MGP_AJ_P0032069 Pnmt protein_coding protein_coding MGP_AJ_T0032070.1 MGP_AJ_G0019025.1 mouse_genomes_project 11 96733436 96734207 + Pnmt protein_coding processed_transcript MGP_AJ_T0032049.1 MGP_AJ_G0019020.1 mouse_genomes_project 11 96550383 96598541 + MGP_AJ_P0032049 Cdk12 protein_coding protein_coding MGP_AJ_T0032050.1 MGP_AJ_G0019020.1 mouse_genomes_project 11 96550638 96593681 + MGP_AJ_P0032050 Cdk12 protein_coding protein_coding MGP_AJ_T0032051.1 MGP_AJ_G0019020.1 mouse_genomes_project 11 96550659 96598021 + MGP_AJ_P0032051 Cdk12 protein_coding protein_coding MGP_AJ_T0032052.1 MGP_AJ_G0019020.1 mouse_genomes_project 11 96567425 96572547 + Cdk12 protein_coding processed_transcript MGP_AJ_T0032053.1 MGP_AJ_G0019020.1 mouse_genomes_project 11 96588712 96625635 + Cdk12 protein_coding processed_transcript MGP_AJ_T0032054.1 MGP_AJ_G0019020.1 mouse_genomes_project 11 96610482 96615183 + Cdk12 protein_coding processed_transcript MGP_AJ_T0003368.1 MGP_AJ_G0003099.1 mouse_genomes_project 11 119876750 119877671 + Gm28192 antisense antisense MGP_AJ_T0012748.1 MGP_AJ_G0010843.1 mouse_genomes_project 11 100625195 100625520 - processed_pseudogene processed_pseudogene MGP_AJ_T0032818.1 MGP_AJ_G0019224.1 mouse_genomes_project 11 101658759 101661936 + MGP_AJ_P0032818 Hexim1 protein_coding protein_coding MGP_AJ_T0012693.1 MGP_AJ_G0010788.1 mouse_genomes_project 11 77373331 77374305 - processed_pseudogene processed_pseudogene MGP_AJ_T0030853.1 MGP_AJ_G0018722.1 mouse_genomes_project 11 75736427 75738722 - MGP_AJ_P0030853 Gm10277 protein_coding protein_coding MGP_AJ_T0032202.1 MGP_AJ_G0019061.1 mouse_genomes_project 11 97795937 97806274 - MGP_AJ_P0032202 Krt20 protein_coding protein_coding MGP_AJ_T0033428.1 MGP_AJ_G0019363.1 mouse_genomes_project 11 114401104 114420958 - MGP_AJ_P0033428 Gga3 protein_coding protein_coding MGP_AJ_T0033429.1 MGP_AJ_G0019363.1 mouse_genomes_project 11 114401104 114420958 - MGP_AJ_P0033429 Gga3 protein_coding protein_coding MGP_AJ_T0033430.1 MGP_AJ_G0019363.1 mouse_genomes_project 11 114401104 114420958 - MGP_AJ_P0033430 Gga3 protein_coding nonsense_mediated_decay MGP_AJ_T0033431.1 MGP_AJ_G0019363.1 mouse_genomes_project 11 114401213 114406291 - Gga3 protein_coding processed_transcript MGP_AJ_T0033432.1 MGP_AJ_G0019363.1 mouse_genomes_project 11 114402553 114405905 - Gga3 protein_coding processed_transcript MGP_AJ_T0033433.1 MGP_AJ_G0019363.1 mouse_genomes_project 11 114402636 114420791 - Gga3 protein_coding processed_transcript MGP_AJ_T0033434.1 MGP_AJ_G0019363.1 mouse_genomes_project 11 114404434 114404877 - Gga3 protein_coding processed_transcript MGP_AJ_T0033435.1 MGP_AJ_G0019363.1 mouse_genomes_project 11 114404785 114420783 - Gga3 protein_coding processed_transcript MGP_AJ_T0033436.1 MGP_AJ_G0019363.1 mouse_genomes_project 11 114405326 114420795 - Gga3 protein_coding processed_transcript MGP_AJ_T0033437.1 MGP_AJ_G0019363.1 mouse_genomes_project 11 114408411 114420800 - MGP_AJ_P0033437 Gga3 protein_coding protein_coding MGP_AJ_T0033438.1 MGP_AJ_G0019363.1 mouse_genomes_project 11 114409268 114420631 - Gga3 protein_coding processed_transcript MGP_AJ_T0033439.1 MGP_AJ_G0019363.1 mouse_genomes_project 11 114409286 114420787 - Gga3 protein_coding processed_transcript MGP_AJ_T0032875.1 MGP_AJ_G0019239.1 mouse_genomes_project 11 102534274 102554391 + MGP_AJ_P0032875 Arf2 protein_coding protein_coding MGP_AJ_T0032876.1 MGP_AJ_G0019239.1 mouse_genomes_project 11 102534406 102554391 + MGP_AJ_P0032876 Arf2 protein_coding protein_coding MGP_AJ_T0032877.1 MGP_AJ_G0019239.1 mouse_genomes_project 11 102540503 102550952 + Arf2 protein_coding retained_intron MGP_AJ_T0032878.1 MGP_AJ_G0019239.1 mouse_genomes_project 11 102548642 102552681 + MGP_AJ_P0032878 Arf2 protein_coding protein_coding MGP_AJ_T0100592.1 MGP_AJ_G0038558.1 mouse_genomes_project 11 53740405 53740471 - Gm24253 snoRNA snoRNA MGP_AJ_T0012572.1 MGP_AJ_G0010667.1 mouse_genomes_project 11 37676332 37676798 + processed_pseudogene processed_pseudogene MGP_AJ_T0029719.1 MGP_AJ_G0018454.1 mouse_genomes_project 11 64832356 64859008 + MGP_AJ_P0029719 Myh3 protein_coding protein_coding MGP_AJ_T0029720.1 MGP_AJ_G0018454.1 mouse_genomes_project 11 64832356 64859008 + MGP_AJ_P0029720 Myh3 protein_coding protein_coding MGP_AJ_T0029721.1 MGP_AJ_G0018454.1 mouse_genomes_project 11 64832356 64859003 + MGP_AJ_P0029721 Myh3 protein_coding protein_coding MGP_AJ_T0028257.1 MGP_AJ_G0018065.1 mouse_genomes_project 11 20666811 20700891 - MGP_AJ_P0028257 Rel protein_coding protein_coding MGP_AJ_T0030219.1 MGP_AJ_G0018565.1 mouse_genomes_project 11 68299789 68300712 + MGP_AJ_P0030219 Zmynd15 protein_coding protein_coding MGP_AJ_T0030220.1 MGP_AJ_G0018565.1 mouse_genomes_project 11 68299986 68300746 + MGP_AJ_P0030220 Zmynd15 protein_coding protein_coding MGP_AJ_T0030221.1 MGP_AJ_G0018565.1 mouse_genomes_project 11 68300045 68306049 + Zmynd15 protein_coding retained_intron MGP_AJ_T0030222.1 MGP_AJ_G0018565.1 mouse_genomes_project 11 68300414 68305940 + MGP_AJ_P0030222 Zmynd15 protein_coding protein_coding MGP_AJ_T0030223.1 MGP_AJ_G0018565.1 mouse_genomes_project 11 68300419 68306059 + MGP_AJ_P0030223 Zmynd15 protein_coding protein_coding MGP_AJ_T0034192.1 MGP_AJ_G0019508.1 mouse_genomes_project 11 120101816 120124037 - MGP_AJ_P0034192 Ogfod3 protein_coding protein_coding MGP_AJ_T0031541.1 MGP_AJ_G0018893.1 mouse_genomes_project 11 87060042 87082658 - MGP_AJ_P0031541 Akap1 protein_coding nonsense_mediated_decay MGP_AJ_T0031542.1 MGP_AJ_G0018893.1 mouse_genomes_project 11 87060042 87082658 - MGP_AJ_P0031542 Akap1 protein_coding protein_coding MGP_AJ_T0031543.1 MGP_AJ_G0018893.1 mouse_genomes_project 11 87060042 87095403 - MGP_AJ_P0031543 Akap1 protein_coding protein_coding MGP_AJ_T0031544.1 MGP_AJ_G0018893.1 mouse_genomes_project 11 87061006 87094534 - MGP_AJ_P0031544 Akap1 protein_coding protein_coding MGP_AJ_T0031545.1 MGP_AJ_G0018893.1 mouse_genomes_project 11 87067478 87072006 - Akap1 protein_coding retained_intron MGP_AJ_T0031546.1 MGP_AJ_G0018893.1 mouse_genomes_project 11 87069433 87074988 - MGP_AJ_P0031546 Akap1 protein_coding nonsense_mediated_decay MGP_AJ_T0029246.1 MGP_AJ_G0018340.1 mouse_genomes_project 11 56244995 56253466 + MGP_AJ_P0029246 protein_coding protein_coding MGP_AJ_T0033250.1 MGP_AJ_G0019321.1 mouse_genomes_project 11 112452107 112462535 + MGP_AJ_P0033250 D11Wsu47e protein_coding protein_coding MGP_AJ_T0033251.1 MGP_AJ_G0019321.1 mouse_genomes_project 11 112452135 112455930 + MGP_AJ_P0033251 D11Wsu47e protein_coding protein_coding MGP_AJ_T0033252.1 MGP_AJ_G0019321.1 mouse_genomes_project 11 112452142 112462535 + MGP_AJ_P0033252 D11Wsu47e protein_coding protein_coding MGP_AJ_T0033253.1 MGP_AJ_G0019321.1 mouse_genomes_project 11 112452781 112455845 + MGP_AJ_P0033253 D11Wsu47e protein_coding protein_coding MGP_AJ_T0031701.1 MGP_AJ_G0018930.1 mouse_genomes_project 11 92799282 92803362 + MGP_AJ_P0031701 Chad protein_coding protein_coding MGP_AJ_T0029166.1 MGP_AJ_G0018304.1 mouse_genomes_project 11 54480132 54804869 + MGP_AJ_P0029166 Gria1 protein_coding protein_coding MGP_AJ_T0029167.1 MGP_AJ_G0018304.1 mouse_genomes_project 11 54480278 54804868 + MGP_AJ_P0029167 Gria1 protein_coding protein_coding MGP_AJ_T0029168.1 MGP_AJ_G0018304.1 mouse_genomes_project 11 54480356 54804874 + MGP_AJ_P0029168 Gria1 protein_coding protein_coding MGP_AJ_T0029169.1 MGP_AJ_G0018304.1 mouse_genomes_project 11 54649668 54664280 + Gria1 protein_coding processed_transcript MGP_AJ_T0028969.1 MGP_AJ_G0018252.1 mouse_genomes_project 11 49629524 49661660 - MGP_AJ_P0028969 Tcf7 protein_coding protein_coding MGP_AJ_T0028970.1 MGP_AJ_G0018252.1 mouse_genomes_project 11 49630389 49662103 - MGP_AJ_P0028970 Tcf7 protein_coding protein_coding MGP_AJ_T0030483.1 MGP_AJ_G0018621.1 mouse_genomes_project 11 71067047 71079201 + MGP_AJ_P0030483 P2rx5 protein_coding protein_coding MGP_AJ_T0030484.1 MGP_AJ_G0018621.1 mouse_genomes_project 11 71067211 71077021 + MGP_AJ_P0030484 P2rx5 protein_coding protein_coding MGP_AJ_T0030485.1 MGP_AJ_G0018621.1 mouse_genomes_project 11 71067211 71077021 + MGP_AJ_P0030485 P2rx5 protein_coding protein_coding MGP_AJ_T0028012.1 MGP_AJ_G0018009.1 mouse_genomes_project 11 5805322 5940905 - MGP_AJ_P0028012 Pkd1l1 protein_coding protein_coding MGP_AJ_T0028013.1 MGP_AJ_G0018009.1 mouse_genomes_project 11 5805389 5917247 - MGP_AJ_P0028013 Pkd1l1 protein_coding protein_coding MGP_AJ_T0028014.1 MGP_AJ_G0018009.1 mouse_genomes_project 11 5823238 5839025 - Pkd1l1 protein_coding processed_transcript MGP_AJ_T0017167.1 MGP_AJ_G0015131.1 mouse_genomes_project 11 19762844 19765874 + Gm20456 processed_transcript processed_transcript MGP_AJ_T0032518.1 MGP_AJ_G0019173.1 mouse_genomes_project 11 99946758 99953390 + Rnd2 protein_coding processed_transcript MGP_AJ_T0032519.1 MGP_AJ_G0019173.1 mouse_genomes_project 11 99947243 99952642 + Rnd2 protein_coding processed_transcript MGP_AJ_T0032520.1 MGP_AJ_G0019173.1 mouse_genomes_project 11 99949934 99953390 + MGP_AJ_P0032520 Rnd2 protein_coding protein_coding MGP_AJ_T0006241.1 MGP_AJ_G0005212.1 mouse_genomes_project 11 49466060 49469884 - 9430098F02Rik lincRNA lincRNA MGP_AJ_T0030144.1 MGP_AJ_G0018548.1 mouse_genomes_project 11 67879825 67883563 + MGP_AJ_P0030144 Asgr1 protein_coding protein_coding MGP_AJ_T0030145.1 MGP_AJ_G0018548.1 mouse_genomes_project 11 67880093 67883563 + MGP_AJ_P0030145 Asgr1 protein_coding protein_coding MGP_AJ_T0030146.1 MGP_AJ_G0018548.1 mouse_genomes_project 11 67880093 67883560 + MGP_AJ_P0030146 Asgr1 protein_coding protein_coding MGP_AJ_T0030147.1 MGP_AJ_G0018548.1 mouse_genomes_project 11 67880436 67883563 + MGP_AJ_P0030147 Asgr1 protein_coding protein_coding MGP_AJ_T0030148.1 MGP_AJ_G0018548.1 mouse_genomes_project 11 67881616 67883039 + MGP_AJ_P0030148 Asgr1 protein_coding protein_coding MGP_AJ_T0003148.1 MGP_AJ_G0002920.1 mouse_genomes_project 11 43318077 43321408 - Gm16033 antisense antisense MGP_AJ_T0009674.1 MGP_AJ_G0007796.1 mouse_genomes_project 11 47040941 47041018 + Gm23813 miRNA miRNA MGP_AJ_T0098896.1 MGP_AJ_G0036879.1 mouse_genomes_project 11 32473629 32474346 + Gm12122 sense_intronic sense_intronic MGP_AJ_T0031992.1 MGP_AJ_G0019009.1 mouse_genomes_project 11 96104935 96110985 - MGP_AJ_P0031992 Rpl23 protein_coding protein_coding MGP_AJ_T0031993.1 MGP_AJ_G0019009.1 mouse_genomes_project 11 96105446 96110824 - Rpl23 protein_coding processed_transcript MGP_AJ_T0031994.1 MGP_AJ_G0019009.1 mouse_genomes_project 11 96105464 96107199 - Rpl23 protein_coding processed_transcript MGP_AJ_T0031995.1 MGP_AJ_G0019009.1 mouse_genomes_project 11 96109909 96110910 - Rpl23 protein_coding processed_transcript MGP_AJ_T0031996.1 MGP_AJ_G0019009.1 mouse_genomes_project 11 96109951 96110930 - MGP_AJ_P0031996 Rpl23 protein_coding protein_coding MGP_AJ_T0009694.1 MGP_AJ_G0007816.1 mouse_genomes_project 11 64856424 64856496 + Mir6923 miRNA miRNA MGP_AJ_T0032759.1 MGP_AJ_G0019212.1 mouse_genomes_project 11 101342668 101364350 - MGP_AJ_P0032759 Gjc1 protein_coding protein_coding MGP_AJ_T0032760.1 MGP_AJ_G0019212.1 mouse_genomes_project 11 101342669 101364871 - MGP_AJ_P0032760 Gjc1 protein_coding protein_coding MGP_AJ_T0032761.1 MGP_AJ_G0019212.1 mouse_genomes_project 11 101342669 101349355 - MGP_AJ_P0032761 Gjc1 protein_coding protein_coding MGP_AJ_T0032762.1 MGP_AJ_G0019212.1 mouse_genomes_project 11 101343821 101350250 - Gjc1 protein_coding retained_intron MGP_AJ_T0032763.1 MGP_AJ_G0019212.1 mouse_genomes_project 11 101344266 101364381 - Gjc1 protein_coding processed_transcript MGP_AJ_T0003239.1 MGP_AJ_G0002997.1 mouse_genomes_project 11 79115646 79126622 + Gm11417 antisense antisense MGP_AJ_T0032865.1 MGP_AJ_G0019238.1 mouse_genomes_project 11 102384364 102521452 - MGP_AJ_P0032865 Nsf protein_coding protein_coding MGP_AJ_T0032866.1 MGP_AJ_G0019238.1 mouse_genomes_project 11 102385507 102389672 - Nsf protein_coding retained_intron MGP_AJ_T0032867.1 MGP_AJ_G0019238.1 mouse_genomes_project 11 102385516 102386672 - Nsf protein_coding retained_intron MGP_AJ_T0032868.1 MGP_AJ_G0019238.1 mouse_genomes_project 11 102409640 102436085 - Nsf protein_coding retained_intron MGP_AJ_T0032869.1 MGP_AJ_G0019238.1 mouse_genomes_project 11 102425137 102436207 - Nsf protein_coding retained_intron MGP_AJ_T0032870.1 MGP_AJ_G0019238.1 mouse_genomes_project 11 102445763 102521420 - Nsf protein_coding retained_intron MGP_AJ_T0032871.1 MGP_AJ_G0019238.1 mouse_genomes_project 11 102474699 102521420 - Nsf protein_coding retained_intron MGP_AJ_T0032872.1 MGP_AJ_G0019238.1 mouse_genomes_project 11 102475730 102505587 - MGP_AJ_P0032872 Nsf protein_coding protein_coding MGP_AJ_T0032873.1 MGP_AJ_G0019238.1 mouse_genomes_project 11 102475834 102493848 - Nsf protein_coding retained_intron MGP_AJ_T0032874.1 MGP_AJ_G0019238.1 mouse_genomes_project 11 102493844 102505587 - MGP_AJ_P0032874 Nsf protein_coding protein_coding MGP_AJ_T0011308.1 MGP_AJ_G0009430.1 mouse_genomes_project 11 84501638 84501741 + Gm25427 misc_RNA misc_RNA MGP_AJ_T0029381.1 MGP_AJ_G0018383.1 mouse_genomes_project 11 57815582 57943190 - MGP_AJ_P0029381 Tom1l2 protein_coding protein_coding MGP_AJ_T0029382.1 MGP_AJ_G0018383.1 mouse_genomes_project 11 57815583 57828056 - Tom1l2 protein_coding processed_transcript MGP_AJ_T0029383.1 MGP_AJ_G0018383.1 mouse_genomes_project 11 57815583 57943190 - MGP_AJ_P0029383 Tom1l2 protein_coding protein_coding MGP_AJ_T0029384.1 MGP_AJ_G0018383.1 mouse_genomes_project 11 57815583 57943190 - MGP_AJ_P0029384 Tom1l2 protein_coding protein_coding MGP_AJ_T0029385.1 MGP_AJ_G0018383.1 mouse_genomes_project 11 57815583 57943190 - MGP_AJ_P0029385 Tom1l2 protein_coding protein_coding MGP_AJ_T0029386.1 MGP_AJ_G0018383.1 mouse_genomes_project 11 57818469 57820214 - Tom1l2 protein_coding processed_transcript MGP_AJ_T0029387.1 MGP_AJ_G0018383.1 mouse_genomes_project 11 57818768 57834231 - MGP_AJ_P0029387 Tom1l2 protein_coding protein_coding MGP_AJ_T0029388.1 MGP_AJ_G0018383.1 mouse_genomes_project 11 57818768 57833723 - MGP_AJ_P0029388 Tom1l2 protein_coding protein_coding MGP_AJ_T0029389.1 MGP_AJ_G0018383.1 mouse_genomes_project 11 57829131 57943190 - MGP_AJ_P0029389 Tom1l2 protein_coding protein_coding MGP_AJ_T0029390.1 MGP_AJ_G0018383.1 mouse_genomes_project 11 57829498 57943190 - MGP_AJ_P0029390 Tom1l2 protein_coding protein_coding MGP_AJ_T0029391.1 MGP_AJ_G0018383.1 mouse_genomes_project 11 57842181 57943190 - Tom1l2 protein_coding processed_transcript MGP_AJ_T0031422.1 MGP_AJ_G0018864.1 mouse_genomes_project 11 85202162 85244206 - MGP_AJ_P0031422 Gdpd1 protein_coding protein_coding MGP_AJ_T0031315.1 MGP_AJ_G0018842.1 mouse_genomes_project 11 83040577 83072115 + MGP_AJ_P0031315 Myo19 protein_coding protein_coding MGP_AJ_T0031316.1 MGP_AJ_G0018842.1 mouse_genomes_project 11 83040599 83043421 + Myo19 protein_coding processed_transcript MGP_AJ_T0031317.1 MGP_AJ_G0018842.1 mouse_genomes_project 11 83040649 83072011 + Myo19 protein_coding processed_transcript MGP_AJ_T0031318.1 MGP_AJ_G0018842.1 mouse_genomes_project 11 83040739 83041433 + Myo19 protein_coding processed_transcript MGP_AJ_T0031319.1 MGP_AJ_G0018842.1 mouse_genomes_project 11 83040782 83072020 + Myo19 protein_coding processed_transcript MGP_AJ_T0031320.1 MGP_AJ_G0018842.1 mouse_genomes_project 11 83040796 83054388 + MGP_AJ_P0031320 Myo19 protein_coding protein_coding MGP_AJ_T0031321.1 MGP_AJ_G0018842.1 mouse_genomes_project 11 83043015 83072011 + Myo19 protein_coding processed_transcript MGP_AJ_T0031563.1 MGP_AJ_G0018902.1 mouse_genomes_project 11 87619353 87756437 - MGP_AJ_P0031563 protein_coding unknown_likely_coding MGP_AJ_T0031564.1 MGP_AJ_G0018902.1 mouse_genomes_project 11 87649615 87863404 - MGP_AJ_P0031564 protein_coding protein_coding MGP_AJ_T0031565.1 MGP_AJ_G0018902.1 mouse_genomes_project 11 87649714 87768370 - MGP_AJ_P0031565 protein_coding protein_coding MGP_AJ_T0012709.1 MGP_AJ_G0010804.1 mouse_genomes_project 11 84808772 84809371 - processed_pseudogene processed_pseudogene MGP_AJ_T0006371.1 MGP_AJ_G0005307.1 mouse_genomes_project 11 116265104 116266084 + Gm11729 lincRNA lincRNA MGP_AJ_T0028929.1 MGP_AJ_G0018244.1 mouse_genomes_project 11 49027076 49095075 - MGP_AJ_P0028929 Sec24a protein_coding protein_coding MGP_AJ_T0028930.1 MGP_AJ_G0018244.1 mouse_genomes_project 11 49032554 49094668 - MGP_AJ_P0028930 Sec24a protein_coding protein_coding MGP_AJ_T0028931.1 MGP_AJ_G0018244.1 mouse_genomes_project 11 49059963 49094895 - MGP_AJ_P0028931 Sec24a protein_coding protein_coding MGP_AJ_T0028932.1 MGP_AJ_G0018244.1 mouse_genomes_project 11 49059963 49094888 - MGP_AJ_P0028932 Sec24a protein_coding protein_coding MGP_AJ_T0028933.1 MGP_AJ_G0018244.1 mouse_genomes_project 11 49067485 49095618 - Sec24a protein_coding retained_intron MGP_AJ_T0028934.1 MGP_AJ_G0018244.1 mouse_genomes_project 11 49078815 49101980 - Sec24a protein_coding retained_intron MGP_AJ_T0012659.1 MGP_AJ_G0010754.1 mouse_genomes_project 11 67772473 67772965 + processed_pseudogene processed_pseudogene MGP_AJ_T0029502.1 MGP_AJ_G0018409.1 mouse_genomes_project 11 59183179 59188634 - Mapk7 protein_coding processed_transcript MGP_AJ_T0029503.1 MGP_AJ_G0018409.1 mouse_genomes_project 11 59183179 59188664 - Mapk7 protein_coding processed_transcript MGP_AJ_T0029504.1 MGP_AJ_G0018409.1 mouse_genomes_project 11 59183179 59188634 - Mapk7 protein_coding processed_transcript MGP_AJ_T0029505.1 MGP_AJ_G0018409.1 mouse_genomes_project 11 59183179 59188664 - MGP_AJ_P0029505 Mapk7 protein_coding protein_coding MGP_AJ_T0029506.1 MGP_AJ_G0018409.1 mouse_genomes_project 11 59183179 59188634 - MGP_AJ_P0029506 Mapk7 protein_coding protein_coding MGP_AJ_T0029507.1 MGP_AJ_G0018409.1 mouse_genomes_project 11 59183179 59188664 - MGP_AJ_P0029507 Mapk7 protein_coding protein_coding MGP_AJ_T0029508.1 MGP_AJ_G0018409.1 mouse_genomes_project 11 59183826 59185306 - MGP_AJ_P0029508 Mapk7 protein_coding protein_coding MGP_AJ_T0029509.1 MGP_AJ_G0018409.1 mouse_genomes_project 11 59185669 59188073 - Mapk7 protein_coding processed_transcript MGP_AJ_T0029510.1 MGP_AJ_G0018409.1 mouse_genomes_project 11 59185923 59188634 - Mapk7 protein_coding processed_transcript MGP_AJ_T0029511.1 MGP_AJ_G0018409.1 mouse_genomes_project 11 59185945 59188634 - Mapk7 protein_coding processed_transcript MGP_AJ_T0029512.1 MGP_AJ_G0018409.1 mouse_genomes_project 11 59185963 59188774 - Mapk7 protein_coding processed_transcript MGP_AJ_T0029513.1 MGP_AJ_G0018409.1 mouse_genomes_project 11 59185973 59188634 - Mapk7 protein_coding processed_transcript MGP_AJ_T0029514.1 MGP_AJ_G0018409.1 mouse_genomes_project 11 59185973 59188556 - Mapk7 protein_coding processed_transcript MGP_AJ_T0029515.1 MGP_AJ_G0018409.1 mouse_genomes_project 11 59186009 59188556 - Mapk7 protein_coding processed_transcript MGP_AJ_T0099342.1 MGP_AJ_G0037308.1 mouse_genomes_project 11 71683080 71683187 + Gm22381 snRNA snRNA MGP_AJ_T0028913.1 MGP_AJ_G0018238.1 mouse_genomes_project 11 48934307 48941055 - MGP_AJ_P0028913 Hnrnpab protein_coding protein_coding MGP_AJ_T0028914.1 MGP_AJ_G0018238.1 mouse_genomes_project 11 48935076 48941055 - MGP_AJ_P0028914 Hnrnpab protein_coding protein_coding MGP_AJ_T0028915.1 MGP_AJ_G0018238.1 mouse_genomes_project 11 48935381 48941055 - MGP_AJ_P0028915 Hnrnpab protein_coding protein_coding MGP_AJ_T0006297.1 MGP_AJ_G0005255.1 mouse_genomes_project 11 81965047 81967809 - lincRNA lincRNA MGP_AJ_T0028194.1 MGP_AJ_G0018054.1 mouse_genomes_project 11 19820574 19907482 - MGP_AJ_P0028194 protein_coding protein_coding MGP_AJ_T0028195.1 MGP_AJ_G0018054.1 mouse_genomes_project 11 19824197 19907352 - MGP_AJ_P0028195 protein_coding protein_coding MGP_AJ_T0028196.1 MGP_AJ_G0018054.1 mouse_genomes_project 11 19824202 19904096 - MGP_AJ_P0028196 protein_coding protein_coding MGP_AJ_T0028197.1 MGP_AJ_G0018054.1 mouse_genomes_project 11 19824273 19882050 - protein_coding retained_intron MGP_AJ_T0028198.1 MGP_AJ_G0018054.1 mouse_genomes_project 11 19824461 19897957 - protein_coding processed_transcript MGP_AJ_T0028199.1 MGP_AJ_G0018054.1 mouse_genomes_project 11 19881254 19907284 - MGP_AJ_P0028199 protein_coding protein_coding MGP_AJ_T0003126.1 MGP_AJ_G0002901.1 mouse_genomes_project 11 14870282 14881349 + antisense antisense MGP_AJ_T0003127.1 MGP_AJ_G0002901.1 mouse_genomes_project 11 14870316 14871464 + antisense antisense MGP_AJ_T0030039.1 MGP_AJ_G0018530.1 mouse_genomes_project 11 67671450 67680089 - MGP_AJ_P0030039 Tnk1 protein_coding protein_coding MGP_AJ_T0030040.1 MGP_AJ_G0018530.1 mouse_genomes_project 11 67671664 67678484 - MGP_AJ_P0030040 Tnk1 protein_coding protein_coding MGP_AJ_T0030041.1 MGP_AJ_G0018530.1 mouse_genomes_project 11 67672520 67676965 - MGP_AJ_P0030041 Tnk1 protein_coding protein_coding MGP_AJ_T0030042.1 MGP_AJ_G0018530.1 mouse_genomes_project 11 67674925 67680089 - MGP_AJ_P0030042 Tnk1 protein_coding protein_coding MGP_AJ_T0030043.1 MGP_AJ_G0018530.1 mouse_genomes_project 11 67676943 67680067 - MGP_AJ_P0030043 Tnk1 protein_coding protein_coding MGP_AJ_T0031753.1 MGP_AJ_G0018945.1 mouse_genomes_project 11 93379545 93384720 + MGP_AJ_P0031753 Dlx3 protein_coding protein_coding MGP_AJ_T0012630.1 MGP_AJ_G0010725.1 mouse_genomes_project 11 56495556 56496021 - processed_pseudogene processed_pseudogene MGP_AJ_T0028277.1 MGP_AJ_G0018070.1 mouse_genomes_project 11 23310909 23390074 + MGP_AJ_P0028277 Fancl protein_coding protein_coding MGP_AJ_T0028278.1 MGP_AJ_G0018070.1 mouse_genomes_project 11 23311976 23387324 + Fancl protein_coding processed_transcript MGP_AJ_T0028279.1 MGP_AJ_G0018070.1 mouse_genomes_project 11 23311976 23352989 + MGP_AJ_P0028279 Fancl protein_coding protein_coding MGP_AJ_T0028280.1 MGP_AJ_G0018070.1 mouse_genomes_project 11 23311976 23389619 + MGP_AJ_P0028280 Fancl protein_coding protein_coding MGP_AJ_T0028281.1 MGP_AJ_G0018070.1 mouse_genomes_project 11 23386534 23389628 + MGP_AJ_P0028281 Fancl protein_coding protein_coding MGP_AJ_T0012527.1 MGP_AJ_G0010622.1 mouse_genomes_project 11 19313601 19315506 + processed_pseudogene processed_pseudogene MGP_AJ_T0102250.1 MGP_AJ_G0039993.1 mouse_genomes_project 11 92842521 92844188 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0031679.1 MGP_AJ_G0018925.1 mouse_genomes_project 11 92711658 92717849 - Spata20 protein_coding processed_transcript MGP_AJ_T0031680.1 MGP_AJ_G0018925.1 mouse_genomes_project 11 92711658 92718096 - MGP_AJ_P0031680 Spata20 protein_coding protein_coding MGP_AJ_T0031681.1 MGP_AJ_G0018925.1 mouse_genomes_project 11 92715821 92717160 - Spata20 protein_coding processed_transcript MGP_AJ_T0031682.1 MGP_AJ_G0018925.1 mouse_genomes_project 11 92716100 92717847 - Spata20 protein_coding processed_transcript MGP_AJ_T0031683.1 MGP_AJ_G0018925.1 mouse_genomes_project 11 92717355 92718921 - Spata20 protein_coding processed_transcript MGP_AJ_T0033595.1 MGP_AJ_G0019390.1 mouse_genomes_project 11 115086788 115116487 - Srp68 protein_coding processed_transcript MGP_AJ_T0033596.1 MGP_AJ_G0019390.1 mouse_genomes_project 11 115086788 115116487 - MGP_AJ_P0033596 Srp68 protein_coding protein_coding MGP_AJ_T0033597.1 MGP_AJ_G0019390.1 mouse_genomes_project 11 115086788 115116405 - MGP_AJ_P0033597 Srp68 protein_coding protein_coding MGP_AJ_T0033598.1 MGP_AJ_G0019390.1 mouse_genomes_project 11 115090489 115103304 - Srp68 protein_coding processed_transcript MGP_AJ_T0006246.1 MGP_AJ_G0005217.1 mouse_genomes_project 11 57479077 57489682 + Gm12714 lincRNA lincRNA MGP_AJ_T0030407.1 MGP_AJ_G0018601.1 mouse_genomes_project 11 70104159 70108017 - MGP_AJ_P0030407 Med31 protein_coding protein_coding MGP_AJ_T0030408.1 MGP_AJ_G0018601.1 mouse_genomes_project 11 70105662 70107490 - Med31 protein_coding retained_intron MGP_AJ_T0100616.1 MGP_AJ_G0038582.1 mouse_genomes_project 11 76535352 76535443 - Gm22947 snoRNA snoRNA MGP_AJ_T0098908.1 MGP_AJ_G0036889.1 mouse_genomes_project 11 118080049 118080613 - Gm11753 sense_intronic sense_intronic MGP_AJ_T0028981.1 MGP_AJ_G0018256.1 mouse_genomes_project 11 50659733 50700003 - MGP_AJ_P0028981 Hspa4 protein_coding protein_coding MGP_AJ_T0028982.1 MGP_AJ_G0018256.1 mouse_genomes_project 11 50662696 50667013 - Hspa4 protein_coding retained_intron MGP_AJ_T0028983.1 MGP_AJ_G0018256.1 mouse_genomes_project 11 50664019 50699957 - Hspa4 protein_coding processed_transcript MGP_AJ_T0034021.1 MGP_AJ_G0019474.1 mouse_genomes_project 11 119400179 119407528 + MGP_AJ_P0034021 Slc25a10 protein_coding protein_coding MGP_AJ_T0034022.1 MGP_AJ_G0019474.1 mouse_genomes_project 11 119400227 119406934 + Slc25a10 protein_coding processed_transcript MGP_AJ_T0034023.1 MGP_AJ_G0019474.1 mouse_genomes_project 11 119400248 119404254 + Slc25a10 protein_coding processed_transcript MGP_AJ_T0034024.1 MGP_AJ_G0019474.1 mouse_genomes_project 11 119400254 119405257 + Slc25a10 protein_coding processed_transcript MGP_AJ_T0034025.1 MGP_AJ_G0019474.1 mouse_genomes_project 11 119404439 119406304 + Slc25a10 protein_coding processed_transcript MGP_AJ_T0034026.1 MGP_AJ_G0019474.1 mouse_genomes_project 11 119406065 119406618 + Slc25a10 protein_coding processed_transcript MGP_AJ_T0029695.1 MGP_AJ_G0018447.1 mouse_genomes_project 11 63573866 63595929 + MGP_AJ_P0029695 Zkscan6 protein_coding protein_coding MGP_AJ_T0029696.1 MGP_AJ_G0018447.1 mouse_genomes_project 11 63573935 63595930 + MGP_AJ_P0029696 Zkscan6 protein_coding protein_coding MGP_AJ_T0032941.1 MGP_AJ_G0019252.1 mouse_genomes_project 11 103891721 103927582 + Mrc2 protein_coding processed_transcript MGP_AJ_T0032942.1 MGP_AJ_G0019252.1 mouse_genomes_project 11 103891724 103951830 + MGP_AJ_P0032942 Mrc2 protein_coding protein_coding MGP_AJ_T0032943.1 MGP_AJ_G0019252.1 mouse_genomes_project 11 103891746 103944560 + MGP_AJ_P0032943 Mrc2 protein_coding protein_coding MGP_AJ_T0032944.1 MGP_AJ_G0019252.1 mouse_genomes_project 11 103929740 103932988 + Mrc2 protein_coding processed_transcript MGP_AJ_T0032945.1 MGP_AJ_G0019252.1 mouse_genomes_project 11 103941516 103943829 + Mrc2 protein_coding retained_intron MGP_AJ_T0032666.1 MGP_AJ_G0019199.1 mouse_genomes_project 11 100818463 100839229 - MGP_AJ_P0032666 Ubtf protein_coding protein_coding MGP_AJ_T0032667.1 MGP_AJ_G0019199.1 mouse_genomes_project 11 100818464 100839229 - MGP_AJ_P0032667 Ubtf protein_coding protein_coding MGP_AJ_T0032668.1 MGP_AJ_G0019199.1 mouse_genomes_project 11 100819697 100838004 - MGP_AJ_P0032668 Ubtf protein_coding protein_coding MGP_AJ_T0032669.1 MGP_AJ_G0019199.1 mouse_genomes_project 11 100819697 100836832 - MGP_AJ_P0032669 Ubtf protein_coding protein_coding MGP_AJ_T0032670.1 MGP_AJ_G0019199.1 mouse_genomes_project 11 100819697 100836808 - MGP_AJ_P0032670 Ubtf protein_coding protein_coding MGP_AJ_T0032671.1 MGP_AJ_G0019199.1 mouse_genomes_project 11 100819697 100839229 - MGP_AJ_P0032671 Ubtf protein_coding protein_coding MGP_AJ_T0032672.1 MGP_AJ_G0019199.1 mouse_genomes_project 11 100819766 100837416 - MGP_AJ_P0032672 Ubtf protein_coding protein_coding MGP_AJ_T0032673.1 MGP_AJ_G0019199.1 mouse_genomes_project 11 100820071 100837764 - MGP_AJ_P0032673 Ubtf protein_coding protein_coding MGP_AJ_T0032674.1 MGP_AJ_G0019199.1 mouse_genomes_project 11 100820259 100839869 - MGP_AJ_P0032674 Ubtf protein_coding protein_coding MGP_AJ_T0032675.1 MGP_AJ_G0019199.1 mouse_genomes_project 11 100822303 100829568 - Ubtf protein_coding retained_intron MGP_AJ_T0032676.1 MGP_AJ_G0019199.1 mouse_genomes_project 11 100829167 100830036 - Ubtf protein_coding retained_intron MGP_AJ_T0032677.1 MGP_AJ_G0019199.1 mouse_genomes_project 11 100831882 100836803 - MGP_AJ_P0032677 Ubtf protein_coding protein_coding MGP_AJ_T0032678.1 MGP_AJ_G0019199.1 mouse_genomes_project 11 100833736 100836833 - MGP_AJ_P0032678 Ubtf protein_coding protein_coding MGP_AJ_T0017166.1 MGP_AJ_G0015130.1 mouse_genomes_project 11 18298516 18302280 + Gm12043 processed_transcript processed_transcript MGP_AJ_T0028918.1 MGP_AJ_G0018240.1 mouse_genomes_project 11 48960254 48972217 - MGP_AJ_P0028918 Rmnd5b protein_coding nonsense_mediated_decay MGP_AJ_T0028919.1 MGP_AJ_G0018240.1 mouse_genomes_project 11 48960256 48972466 - MGP_AJ_P0028919 Rmnd5b protein_coding protein_coding MGP_AJ_T0028920.1 MGP_AJ_G0018240.1 mouse_genomes_project 11 48960622 48962418 - MGP_AJ_P0028920 Rmnd5b protein_coding protein_coding MGP_AJ_T0028921.1 MGP_AJ_G0018240.1 mouse_genomes_project 11 48965905 48972323 - Rmnd5b protein_coding processed_transcript MGP_AJ_T0028088.1 MGP_AJ_G0018024.1 mouse_genomes_project 11 13404551 13412584 - MGP_AJ_P0028088 Sec61g protein_coding protein_coding MGP_AJ_T0028089.1 MGP_AJ_G0018024.1 mouse_genomes_project 11 13405409 13412278 - MGP_AJ_P0028089 Sec61g protein_coding protein_coding MGP_AJ_T0028090.1 MGP_AJ_G0018024.1 mouse_genomes_project 11 13405660 13412584 - MGP_AJ_P0028090 Sec61g protein_coding protein_coding MGP_AJ_T0028091.1 MGP_AJ_G0018024.1 mouse_genomes_project 11 13405660 13412584 - MGP_AJ_P0028091 Sec61g protein_coding protein_coding MGP_AJ_T0028092.1 MGP_AJ_G0018024.1 mouse_genomes_project 11 13405665 13409157 - Sec61g protein_coding retained_intron MGP_AJ_T0028093.1 MGP_AJ_G0018024.1 mouse_genomes_project 11 13405673 13412181 - MGP_AJ_P0028093 Sec61g protein_coding protein_coding MGP_AJ_T0028094.1 MGP_AJ_G0018024.1 mouse_genomes_project 11 13410203 13412244 - Sec61g protein_coding retained_intron MGP_AJ_T0000844.1 MGP_AJ_G0000779.1 mouse_genomes_project 11 28741641 28742006 + TEC TEC MGP_AJ_T0006240.1 MGP_AJ_G0005211.1 mouse_genomes_project 11 49289001 49646640 - lincRNA lincRNA MGP_AJ_T0012478.1 MGP_AJ_G0010573.1 mouse_genomes_project 11 5092867 5094601 - processed_pseudogene processed_pseudogene MGP_AJ_T0031730.1 MGP_AJ_G0018939.1 mouse_genomes_project 11 93221879 93235157 - MGP_AJ_P0031730 Sgca protein_coding protein_coding MGP_AJ_T0031731.1 MGP_AJ_G0018939.1 mouse_genomes_project 11 93221885 93229509 - MGP_AJ_P0031731 Sgca protein_coding protein_coding MGP_AJ_T0031732.1 MGP_AJ_G0018939.1 mouse_genomes_project 11 93221910 93232293 - MGP_AJ_P0031732 Sgca protein_coding protein_coding MGP_AJ_T0031733.1 MGP_AJ_G0018939.1 mouse_genomes_project 11 93222296 93235157 - MGP_AJ_P0031733 Sgca protein_coding protein_coding MGP_AJ_T0031735.1 MGP_AJ_G0018939.1 mouse_genomes_project 11 93231056 93232319 - MGP_AJ_P0031735 Sgca protein_coding protein_coding MGP_AJ_T0027743.1 MGP_AJ_G0017947.1 mouse_genomes_project 11 1040300 1062158 - MGP_AJ_P0027743 Sec14l2 protein_coding protein_coding MGP_AJ_T0027744.1 MGP_AJ_G0017947.1 mouse_genomes_project 11 1041036 1062023 - Sec14l2 protein_coding processed_transcript MGP_AJ_T0027745.1 MGP_AJ_G0017947.1 mouse_genomes_project 11 1041036 1052458 - Sec14l2 protein_coding processed_transcript MGP_AJ_T0027746.1 MGP_AJ_G0017947.1 mouse_genomes_project 11 1046710 1052207 - Sec14l2 protein_coding processed_transcript MGP_AJ_T0027747.1 MGP_AJ_G0017947.1 mouse_genomes_project 11 1054506 1066742 - Sec14l2 protein_coding processed_transcript MGP_AJ_T0027748.1 MGP_AJ_G0017947.1 mouse_genomes_project 11 1059783 1062080 - Sec14l2 protein_coding processed_transcript MGP_AJ_T0032957.1 MGP_AJ_G0019255.1 mouse_genomes_project 11 104553302 104563768 - MGP_AJ_P0032957 Cyb561 protein_coding protein_coding MGP_AJ_T0032958.1 MGP_AJ_G0019255.1 mouse_genomes_project 11 104554692 104563748 - MGP_AJ_P0032958 Cyb561 protein_coding protein_coding MGP_AJ_T0032959.1 MGP_AJ_G0019255.1 mouse_genomes_project 11 104555097 104555786 - Cyb561 protein_coding processed_transcript MGP_AJ_T0032960.1 MGP_AJ_G0019255.1 mouse_genomes_project 11 104555407 104572722 - MGP_AJ_P0032960 Cyb561 protein_coding protein_coding MGP_AJ_T0032961.1 MGP_AJ_G0019255.1 mouse_genomes_project 11 104555818 104564038 - MGP_AJ_P0032961 Cyb561 protein_coding protein_coding MGP_AJ_T0032962.1 MGP_AJ_G0019255.1 mouse_genomes_project 11 104556163 104564096 - MGP_AJ_P0032962 Cyb561 protein_coding protein_coding MGP_AJ_T0034222.1 MGP_AJ_G0019515.1 mouse_genomes_project 11 120328172 120337897 + MGP_AJ_P0034222 Fn3krp protein_coding protein_coding MGP_AJ_T0034042.1 MGP_AJ_G0019481.1 mouse_genomes_project 11 119508013 119517699 + MGP_AJ_P0034042 Anapc11 protein_coding protein_coding MGP_AJ_T0034043.1 MGP_AJ_G0019481.1 mouse_genomes_project 11 119508032 119510281 + Anapc11 protein_coding retained_intron MGP_AJ_T0034044.1 MGP_AJ_G0019481.1 mouse_genomes_project 11 119508124 119515277 + MGP_AJ_P0034044 Anapc11 protein_coding protein_coding MGP_AJ_T0034045.1 MGP_AJ_G0019481.1 mouse_genomes_project 11 119513444 119514993 + Anapc11 protein_coding processed_transcript MGP_AJ_T0031268.1 MGP_AJ_G0018832.1 mouse_genomes_project 11 82199128 82221242 - MGP_AJ_P0031268 Dusp14 protein_coding protein_coding MGP_AJ_T0031269.1 MGP_AJ_G0018832.1 mouse_genomes_project 11 82199128 82220798 - MGP_AJ_P0031269 Dusp14 protein_coding protein_coding MGP_AJ_T0031270.1 MGP_AJ_G0018832.1 mouse_genomes_project 11 82199132 82221020 - MGP_AJ_P0031270 Dusp14 protein_coding protein_coding MGP_AJ_T0031271.1 MGP_AJ_G0018832.1 mouse_genomes_project 11 82199501 82219521 - MGP_AJ_P0031271 Dusp14 protein_coding protein_coding MGP_AJ_T0031272.1 MGP_AJ_G0018832.1 mouse_genomes_project 11 82200067 82221702 - MGP_AJ_P0031272 Dusp14 protein_coding protein_coding MGP_AJ_T0027788.1 MGP_AJ_G0017958.1 mouse_genomes_project 11 1586543 1630345 + MGP_AJ_P0027788 Ascc2 protein_coding protein_coding MGP_AJ_T0027789.1 MGP_AJ_G0017958.1 mouse_genomes_project 11 1586543 1632664 + MGP_AJ_P0027789 Ascc2 protein_coding protein_coding MGP_AJ_T0029406.1 MGP_AJ_G0018387.1 mouse_genomes_project 11 58046242 58053557 + Drg2 protein_coding retained_intron MGP_AJ_T0029407.1 MGP_AJ_G0018387.1 mouse_genomes_project 11 58046242 58059923 + MGP_AJ_P0029407 Drg2 protein_coding protein_coding MGP_AJ_T0029408.1 MGP_AJ_G0018387.1 mouse_genomes_project 11 58046275 58054351 + Drg2 protein_coding retained_intron MGP_AJ_T0029409.1 MGP_AJ_G0018387.1 mouse_genomes_project 11 58051071 58052039 + Drg2 protein_coding retained_intron MGP_AJ_T0029410.1 MGP_AJ_G0018387.1 mouse_genomes_project 11 58053210 58054745 + Drg2 protein_coding retained_intron MGP_AJ_T0031426.1 MGP_AJ_G0018867.1 mouse_genomes_project 11 85279952 85295331 + MGP_AJ_P0031426 Ska2 protein_coding protein_coding MGP_AJ_T0031427.1 MGP_AJ_G0018867.1 mouse_genomes_project 11 85279969 85295330 + Ska2 protein_coding processed_transcript MGP_AJ_T0031428.1 MGP_AJ_G0018867.1 mouse_genomes_project 11 85286587 85292803 + Ska2 protein_coding processed_transcript MGP_AJ_T0012629.1 MGP_AJ_G0010724.1 mouse_genomes_project 11 56174668 56175684 - processed_pseudogene processed_pseudogene MGP_AJ_T0099379.1 MGP_AJ_G0037345.1 mouse_genomes_project 11 104813303 104813447 - Gm25556 snRNA snRNA MGP_AJ_T0012540.1 MGP_AJ_G0010635.1 mouse_genomes_project 11 24467035 24467511 - processed_pseudogene processed_pseudogene MGP_AJ_T0029134.1 MGP_AJ_G0018292.1 mouse_genomes_project 11 52447427 52502543 - MGP_AJ_P0029134 Anxa6 protein_coding protein_coding MGP_AJ_T0029135.1 MGP_AJ_G0018292.1 mouse_genomes_project 11 52447427 52502543 - MGP_AJ_P0029135 Anxa6 protein_coding protein_coding MGP_AJ_T0029136.1 MGP_AJ_G0018292.1 mouse_genomes_project 11 52459589 52502513 - Anxa6 protein_coding processed_transcript MGP_AJ_T0033299.1 MGP_AJ_G0019331.1 mouse_genomes_project 11 113635021 113650660 + MGP_AJ_P0033299 Gprc5c protein_coding protein_coding MGP_AJ_T0033300.1 MGP_AJ_G0019331.1 mouse_genomes_project 11 113635357 113659612 + MGP_AJ_P0033300 Gprc5c protein_coding protein_coding MGP_AJ_T0033301.1 MGP_AJ_G0019331.1 mouse_genomes_project 11 113635409 113656102 + MGP_AJ_P0033301 Gprc5c protein_coding protein_coding MGP_AJ_T0033302.1 MGP_AJ_G0019331.1 mouse_genomes_project 11 113635719 113656103 + MGP_AJ_P0033302 Gprc5c protein_coding protein_coding MGP_AJ_T0033303.1 MGP_AJ_G0019331.1 mouse_genomes_project 11 113635749 113651274 + MGP_AJ_P0033303 Gprc5c protein_coding protein_coding MGP_AJ_T0033304.1 MGP_AJ_G0019331.1 mouse_genomes_project 11 113636188 113650824 + MGP_AJ_P0033304 Gprc5c protein_coding protein_coding MGP_AJ_T0033305.1 MGP_AJ_G0019331.1 mouse_genomes_project 11 113651418 113657614 + MGP_AJ_P0033305 Gprc5c protein_coding protein_coding MGP_AJ_T0098819.1 MGP_AJ_G0036803.1 mouse_genomes_project 11 85162587 85162718 - Gm22387 scaRNA scaRNA MGP_AJ_T0031193.1 MGP_AJ_G0018805.1 mouse_genomes_project 11 81078693 81098078 - MGP_AJ_P0031193 protein_coding protein_coding MGP_AJ_T0012587.1 MGP_AJ_G0010682.1 mouse_genomes_project 11 45684624 45685896 - processed_pseudogene processed_pseudogene MGP_AJ_T0033847.1 MGP_AJ_G0019443.1 mouse_genomes_project 11 118039138 118126001 - MGP_AJ_P0033847 Tbc1d16 protein_coding unknown_likely_coding MGP_AJ_T0033848.1 MGP_AJ_G0019443.1 mouse_genomes_project 11 118039146 118126060 - MGP_AJ_P0033848 Tbc1d16 protein_coding protein_coding MGP_AJ_T0033849.1 MGP_AJ_G0019443.1 mouse_genomes_project 11 118107179 118118467 - MGP_AJ_P0033849 Tbc1d16 protein_coding protein_coding MGP_AJ_T0032745.1 MGP_AJ_G0019210.1 mouse_genomes_project 11 101219163 101232838 - MGP_AJ_P0032745 Ccdc43 protein_coding protein_coding MGP_AJ_T0032746.1 MGP_AJ_G0019210.1 mouse_genomes_project 11 101219165 101232790 - MGP_AJ_P0032746 Ccdc43 protein_coding protein_coding MGP_AJ_T0032747.1 MGP_AJ_G0019210.1 mouse_genomes_project 11 101220827 101232592 - Ccdc43 protein_coding processed_transcript MGP_AJ_T0032748.1 MGP_AJ_G0019210.1 mouse_genomes_project 11 101223419 101232790 - Ccdc43 protein_coding processed_transcript MGP_AJ_T0032749.1 MGP_AJ_G0019210.1 mouse_genomes_project 11 101224819 101232726 - Ccdc43 protein_coding processed_transcript MGP_AJ_T0032988.1 MGP_AJ_G0019265.1 mouse_genomes_project 11 104824266 104843658 - MGP_AJ_P0032988 Ccdc47 protein_coding protein_coding MGP_AJ_T0032989.1 MGP_AJ_G0019265.1 mouse_genomes_project 11 104828081 104831733 - MGP_AJ_P0032989 Ccdc47 protein_coding protein_coding MGP_AJ_T0032990.1 MGP_AJ_G0019265.1 mouse_genomes_project 11 104828920 104832740 - MGP_AJ_P0032990 Ccdc47 protein_coding protein_coding MGP_AJ_T0032991.1 MGP_AJ_G0019265.1 mouse_genomes_project 11 104829309 104830210 - MGP_AJ_P0032991 Ccdc47 protein_coding protein_coding MGP_AJ_T0032992.1 MGP_AJ_G0019265.1 mouse_genomes_project 11 104831597 104832847 - Ccdc47 protein_coding processed_transcript MGP_AJ_T0011291.1 MGP_AJ_G0009413.1 mouse_genomes_project 11 569655 569832 - Gm27624 misc_RNA misc_RNA MGP_AJ_T0027911.1 MGP_AJ_G0017985.1 mouse_genomes_project 11 2870712 2885133 - MGP_AJ_P0027911 Gck protein_coding protein_coding MGP_AJ_T0027912.1 MGP_AJ_G0017985.1 mouse_genomes_project 11 2870712 2885133 - MGP_AJ_P0027912 Gck protein_coding protein_coding MGP_AJ_T0027913.1 MGP_AJ_G0017985.1 mouse_genomes_project 11 2870715 2922435 - MGP_AJ_P0027913 Gck protein_coding protein_coding MGP_AJ_T0027914.1 MGP_AJ_G0017985.1 mouse_genomes_project 11 2871461 2871980 - MGP_AJ_P0027914 Gck protein_coding protein_coding MGP_AJ_T0099366.1 MGP_AJ_G0037332.1 mouse_genomes_project 11 94362453 94362637 - Gm22423 snRNA snRNA MGP_AJ_T0030889.1 MGP_AJ_G0018726.1 mouse_genomes_project 11 75987942 75993529 + MGP_AJ_P0030889 Dhrs13 protein_coding protein_coding MGP_AJ_T0030890.1 MGP_AJ_G0018726.1 mouse_genomes_project 11 75988011 75993454 + MGP_AJ_P0030890 Dhrs13 protein_coding nonsense_mediated_decay MGP_AJ_T0030891.1 MGP_AJ_G0018726.1 mouse_genomes_project 11 75988014 75993527 + MGP_AJ_P0030891 Dhrs13 protein_coding protein_coding MGP_AJ_T0030892.1 MGP_AJ_G0018726.1 mouse_genomes_project 11 75988021 75989140 + MGP_AJ_P0030892 Dhrs13 protein_coding protein_coding MGP_AJ_T0009775.1 MGP_AJ_G0007897.1 mouse_genomes_project 11 119183774 119183912 + miRNA miRNA MGP_AJ_T0003343.1 MGP_AJ_G0003079.1 mouse_genomes_project 11 114775530 114781186 - Sap30bpos antisense antisense MGP_AJ_T0034183.1 MGP_AJ_G0019504.1 mouse_genomes_project 11 119990317 120000071 - MGP_AJ_P0034183 Sectm1a protein_coding protein_coding MGP_AJ_T0034184.1 MGP_AJ_G0019504.1 mouse_genomes_project 11 119990317 119999990 - MGP_AJ_P0034184 Sectm1a protein_coding protein_coding MGP_AJ_T0034185.1 MGP_AJ_G0019504.1 mouse_genomes_project 11 119990827 119999987 - MGP_AJ_P0034185 Sectm1a protein_coding protein_coding MGP_AJ_T0034186.1 MGP_AJ_G0019504.1 mouse_genomes_project 11 119990845 119999981 - MGP_AJ_P0034186 Sectm1a protein_coding protein_coding MGP_AJ_T0034187.1 MGP_AJ_G0019504.1 mouse_genomes_project 11 119991946 119999976 - Sectm1a protein_coding processed_transcript MGP_AJ_T0027769.1 MGP_AJ_G0017953.1 mouse_genomes_project 11 1180491 1183737 + Osm protein_coding processed_transcript MGP_AJ_T0027770.1 MGP_AJ_G0017953.1 mouse_genomes_project 11 1180491 1185099 + MGP_AJ_P0027770 Osm protein_coding protein_coding MGP_AJ_T0027721.1 MGP_AJ_G0017941.1 mouse_genomes_project 11 871106 909465 - MGP_AJ_P0027721 4930556J24Rik protein_coding protein_coding MGP_AJ_T0032216.1 MGP_AJ_G0019073.1 mouse_genomes_project 11 97984836 97986755 - MGP_AJ_P0032216 protein_coding protein_coding MGP_AJ_T0102264.1 MGP_AJ_G0040007.1 mouse_genomes_project 11 107336635 107337597 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0009687.1 MGP_AJ_G0007809.1 mouse_genomes_project 11 57787387 57787467 - Mir6921 miRNA miRNA MGP_AJ_T0030770.1 MGP_AJ_G0018702.1 mouse_genomes_project 11 74616571 74617778 + MGP_AJ_P0030770 Bhlha9 protein_coding protein_coding MGP_AJ_T0012542.1 MGP_AJ_G0010637.1 mouse_genomes_project 11 25982228 25983071 + processed_pseudogene processed_pseudogene MGP_AJ_T0029813.1 MGP_AJ_G0018477.1 mouse_genomes_project 11 66709782 66715709 - MGP_AJ_P0029813 Odf4 protein_coding protein_coding MGP_AJ_T0029814.1 MGP_AJ_G0018477.1 mouse_genomes_project 11 66709783 66715741 - MGP_AJ_P0029814 Odf4 protein_coding nonsense_mediated_decay MGP_AJ_T0029815.1 MGP_AJ_G0018477.1 mouse_genomes_project 11 66709910 66715476 - MGP_AJ_P0029815 Odf4 protein_coding nonsense_mediated_decay MGP_AJ_T0029816.1 MGP_AJ_G0018477.1 mouse_genomes_project 11 66711038 66715734 - MGP_AJ_P0029816 Odf4 protein_coding protein_coding MGP_AJ_T0033003.1 MGP_AJ_G0019269.1 mouse_genomes_project 11 104890084 104894705 - MGP_AJ_P0033003 Smarcd2 protein_coding protein_coding MGP_AJ_T0033004.1 MGP_AJ_G0019269.1 mouse_genomes_project 11 104890084 104899827 - MGP_AJ_P0033004 Smarcd2 protein_coding protein_coding MGP_AJ_T0033005.1 MGP_AJ_G0019269.1 mouse_genomes_project 11 104890619 104892568 - Smarcd2 protein_coding retained_intron MGP_AJ_T0033006.1 MGP_AJ_G0019269.1 mouse_genomes_project 11 104890704 104891842 - Smarcd2 protein_coding retained_intron MGP_AJ_T0033007.1 MGP_AJ_G0019269.1 mouse_genomes_project 11 104890924 104892652 - MGP_AJ_P0033007 Smarcd2 protein_coding protein_coding MGP_AJ_T0033008.1 MGP_AJ_G0019269.1 mouse_genomes_project 11 104891638 104892977 - Smarcd2 protein_coding retained_intron MGP_AJ_T0033009.1 MGP_AJ_G0019269.1 mouse_genomes_project 11 104892217 104899820 - Smarcd2 protein_coding processed_transcript MGP_AJ_T0033010.1 MGP_AJ_G0019269.1 mouse_genomes_project 11 104892644 104894389 - Smarcd2 protein_coding processed_transcript MGP_AJ_T0033011.1 MGP_AJ_G0019269.1 mouse_genomes_project 11 104893796 104894434 - Smarcd2 protein_coding retained_intron MGP_AJ_T0028925.1 MGP_AJ_G0018242.1 mouse_genomes_project 11 48988394 48995127 + MGP_AJ_P0028925 protein_coding protein_coding MGP_AJ_T0028926.1 MGP_AJ_G0018242.1 mouse_genomes_project 11 48988396 48995126 + MGP_AJ_P0028926 protein_coding protein_coding MGP_AJ_T0012671.1 MGP_AJ_G0010766.1 mouse_genomes_project 11 71136013 71136232 - processed_pseudogene processed_pseudogene MGP_AJ_T0030396.1 MGP_AJ_G0018598.1 mouse_genomes_project 11 70046135 70047510 - 4933427D14Rik protein_coding processed_transcript MGP_AJ_T0030397.1 MGP_AJ_G0018598.1 mouse_genomes_project 11 70046135 70099900 - MGP_AJ_P0030397 4933427D14Rik protein_coding nonsense_mediated_decay MGP_AJ_T0030398.1 MGP_AJ_G0018598.1 mouse_genomes_project 11 70046136 70099708 - MGP_AJ_P0030398 4933427D14Rik protein_coding nonsense_mediated_decay MGP_AJ_T0030399.1 MGP_AJ_G0018598.1 mouse_genomes_project 11 70046303 70096211 - MGP_AJ_P0030399 4933427D14Rik protein_coding protein_coding MGP_AJ_T0030400.1 MGP_AJ_G0018598.1 mouse_genomes_project 11 70047599 70068255 - 4933427D14Rik protein_coding processed_transcript MGP_AJ_T0030401.1 MGP_AJ_G0018598.1 mouse_genomes_project 11 70087885 70099872 - MGP_AJ_P0030401 4933427D14Rik protein_coding protein_coding MGP_AJ_T0030402.1 MGP_AJ_G0018598.1 mouse_genomes_project 11 70090884 70099661 - 4933427D14Rik protein_coding processed_transcript MGP_AJ_T0030403.1 MGP_AJ_G0018598.1 mouse_genomes_project 11 70091131 70095049 - 4933427D14Rik protein_coding processed_transcript MGP_AJ_T0006344.1 MGP_AJ_G0005288.1 mouse_genomes_project 11 108289398 108314773 + Gm11685 lincRNA lincRNA MGP_AJ_T0030384.1 MGP_AJ_G0018595.1 mouse_genomes_project 11 69919774 69929299 - MGP_AJ_P0030384 Aipl1 protein_coding protein_coding MGP_AJ_T0030385.1 MGP_AJ_G0018595.1 mouse_genomes_project 11 69920527 69929319 - MGP_AJ_P0030385 Aipl1 protein_coding nonsense_mediated_decay MGP_AJ_T0032254.1 MGP_AJ_G0019109.1 mouse_genomes_project 11 98523042 98527285 - MGP_AJ_P0032254 Krt13 protein_coding protein_coding MGP_AJ_T0032255.1 MGP_AJ_G0019109.1 mouse_genomes_project 11 98523615 98524553 - Krt13 protein_coding retained_intron MGP_AJ_T0032256.1 MGP_AJ_G0019109.1 mouse_genomes_project 11 98524863 98526296 - Krt13 protein_coding processed_transcript MGP_AJ_T0031848.1 MGP_AJ_G0018977.1 mouse_genomes_project 11 94649873 94652377 + MGP_AJ_P0031848 Hoxb1 protein_coding protein_coding MGP_AJ_T0031849.1 MGP_AJ_G0018977.1 mouse_genomes_project 11 94650379 94651343 + Hoxb1 protein_coding processed_transcript MGP_AJ_T0032212.1 MGP_AJ_G0019069.1 mouse_genomes_project 11 97950568 97951608 - MGP_AJ_P0032212 Krtap1-5 protein_coding protein_coding MGP_AJ_T0033411.1 MGP_AJ_G0019360.1 mouse_genomes_project 11 114306456 114324487 - MGP_AJ_P0033411 Hn1 protein_coding protein_coding MGP_AJ_T0033412.1 MGP_AJ_G0019360.1 mouse_genomes_project 11 114307399 114324248 - Hn1 protein_coding processed_transcript MGP_AJ_T0033413.1 MGP_AJ_G0019360.1 mouse_genomes_project 11 114307498 114324448 - Hn1 protein_coding processed_transcript MGP_AJ_T0033414.1 MGP_AJ_G0019360.1 mouse_genomes_project 11 114309705 114324471 - Hn1 protein_coding processed_transcript MGP_AJ_T0033415.1 MGP_AJ_G0019360.1 mouse_genomes_project 11 114312420 114324216 - Hn1 protein_coding processed_transcript MGP_AJ_T0003337.1 MGP_AJ_G0003074.1 mouse_genomes_project 11 108627527 108629347 + Gm11697 antisense antisense MGP_AJ_T0031233.1 MGP_AJ_G0018818.1 mouse_genomes_project 11 81621803 81632233 - MGP_AJ_P0031233 Heatr9 protein_coding protein_coding MGP_AJ_T0033118.1 MGP_AJ_G0019292.1 mouse_genomes_project 11 106530235 106567513 - MGP_AJ_P0033118 Cacng5 protein_coding protein_coding MGP_AJ_T0033119.1 MGP_AJ_G0019292.1 mouse_genomes_project 11 106530301 106571226 - MGP_AJ_P0033119 Cacng5 protein_coding protein_coding MGP_AJ_T0006219.1 MGP_AJ_G0005192.1 mouse_genomes_project 11 31995452 31997645 + Gm12711 lincRNA lincRNA MGP_AJ_T0031494.1 MGP_AJ_G0018880.1 mouse_genomes_project 11 85993136 86012333 - MGP_AJ_P0031494 Lpo protein_coding protein_coding MGP_AJ_T0031495.1 MGP_AJ_G0018880.1 mouse_genomes_project 11 86002880 86003819 - Lpo protein_coding retained_intron MGP_AJ_T0031496.1 MGP_AJ_G0018880.1 mouse_genomes_project 11 86004047 86014368 - MGP_AJ_P0031496 Lpo protein_coding protein_coding MGP_AJ_T0006212.1 MGP_AJ_G0005185.1 mouse_genomes_project 11 28874160 28879713 + Gm12107 lincRNA lincRNA MGP_AJ_T0029907.1 MGP_AJ_G0018495.1 mouse_genomes_project 11 67122822 67124636 + MGP_AJ_P0029907 Trappc1 protein_coding protein_coding MGP_AJ_T0029908.1 MGP_AJ_G0018495.1 mouse_genomes_project 11 67122905 67124636 + MGP_AJ_P0029908 Trappc1 protein_coding protein_coding MGP_AJ_T0029909.1 MGP_AJ_G0018495.1 mouse_genomes_project 11 67122917 67124636 + MGP_AJ_P0029909 Trappc1 protein_coding protein_coding MGP_AJ_T0029910.1 MGP_AJ_G0018495.1 mouse_genomes_project 11 67122999 67124636 + MGP_AJ_P0029910 Trappc1 protein_coding protein_coding MGP_AJ_T0029911.1 MGP_AJ_G0018495.1 mouse_genomes_project 11 67123280 67124075 + Trappc1 protein_coding processed_transcript MGP_AJ_T0006334.1 MGP_AJ_G0005280.1 mouse_genomes_project 11 98727111 98730295 + Gm12349 lincRNA lincRNA MGP_AJ_T0006205.1 MGP_AJ_G0005180.1 mouse_genomes_project 11 25701458 25712700 + 2810471M01Rik lincRNA lincRNA MGP_AJ_T0012755.1 MGP_AJ_G0010850.1 mouse_genomes_project 11 103070846 103071258 + processed_pseudogene processed_pseudogene MGP_AJ_T0012509.1 MGP_AJ_G0010604.1 mouse_genomes_project 11 17052157 17052380 + processed_pseudogene processed_pseudogene MGP_AJ_T0030949.1 MGP_AJ_G0018739.1 mouse_genomes_project 11 76253483 76256388 + MGP_AJ_P0030949 BC030499 protein_coding protein_coding MGP_AJ_T0030950.1 MGP_AJ_G0018739.1 mouse_genomes_project 11 76253534 76257985 + BC030499 protein_coding retained_intron MGP_AJ_T0030951.1 MGP_AJ_G0018739.1 mouse_genomes_project 11 76253536 76256461 + BC030499 protein_coding retained_intron MGP_AJ_T0030952.1 MGP_AJ_G0018739.1 mouse_genomes_project 11 76253571 76256476 + BC030499 protein_coding retained_intron MGP_AJ_T0030953.1 MGP_AJ_G0018739.1 mouse_genomes_project 11 76254198 76254806 + BC030499 protein_coding retained_intron MGP_AJ_T0030954.1 MGP_AJ_G0018739.1 mouse_genomes_project 11 76256449 76259448 + BC030499 protein_coding retained_intron MGP_AJ_T0012739.1 MGP_AJ_G0010834.1 mouse_genomes_project 11 98055719 98056663 + processed_pseudogene processed_pseudogene MGP_AJ_T0032968.1 MGP_AJ_G0019258.1 mouse_genomes_project 11 104629014 104650613 + MGP_AJ_P0032968 Kcnh6 protein_coding protein_coding MGP_AJ_T0032969.1 MGP_AJ_G0019258.1 mouse_genomes_project 11 104629063 104651055 + MGP_AJ_P0032969 Kcnh6 protein_coding protein_coding MGP_AJ_T0032970.1 MGP_AJ_G0019258.1 mouse_genomes_project 11 104629093 104650570 + MGP_AJ_P0032970 Kcnh6 protein_coding nonsense_mediated_decay MGP_AJ_T0032971.1 MGP_AJ_G0019258.1 mouse_genomes_project 11 104634663 104638365 + Kcnh6 protein_coding processed_transcript MGP_AJ_T0030543.1 MGP_AJ_G0018649.1 mouse_genomes_project 11 71961140 71973528 - MGP_AJ_P0030543 Olfr139 protein_coding protein_coding MGP_AJ_T0030544.1 MGP_AJ_G0018649.1 mouse_genomes_project 11 71961140 71962088 - MGP_AJ_P0030544 Olfr139 protein_coding protein_coding MGP_AJ_T0030545.1 MGP_AJ_G0018649.1 mouse_genomes_project 11 71967395 71970983 - Olfr139 protein_coding processed_transcript MGP_AJ_T0030005.1 MGP_AJ_G0018519.1 mouse_genomes_project 11 67554296 67580108 - MGP_AJ_P0030005 Polr2a protein_coding protein_coding MGP_AJ_T0030006.1 MGP_AJ_G0018519.1 mouse_genomes_project 11 67554709 67579693 - MGP_AJ_P0030006 Polr2a protein_coding protein_coding MGP_AJ_T0030007.1 MGP_AJ_G0018519.1 mouse_genomes_project 11 67556510 67557648 - Polr2a protein_coding processed_transcript MGP_AJ_T0030008.1 MGP_AJ_G0018519.1 mouse_genomes_project 11 67561923 67562870 - Polr2a protein_coding processed_transcript MGP_AJ_T0012687.1 MGP_AJ_G0010782.1 mouse_genomes_project 11 75697469 75698442 + processed_pseudogene processed_pseudogene MGP_AJ_T0009712.1 MGP_AJ_G0007834.1 mouse_genomes_project 11 73085943 73086034 + Mir212 miRNA miRNA MGP_AJ_T0027649.1 MGP_AJ_G0017928.1 mouse_genomes_project 11 244031 256617 + MGP_AJ_P0027649 Pik3ip1 protein_coding protein_coding MGP_AJ_T0027650.1 MGP_AJ_G0017928.1 mouse_genomes_project 11 244358 245732 + Pik3ip1 protein_coding retained_intron MGP_AJ_T0027651.1 MGP_AJ_G0017928.1 mouse_genomes_project 11 244417 255329 + MGP_AJ_P0027651 Pik3ip1 protein_coding protein_coding MGP_AJ_T0027652.1 MGP_AJ_G0017928.1 mouse_genomes_project 11 244423 247591 + Pik3ip1 protein_coding retained_intron MGP_AJ_T0027653.1 MGP_AJ_G0017928.1 mouse_genomes_project 11 244438 247593 + MGP_AJ_P0027653 Pik3ip1 protein_coding protein_coding MGP_AJ_T0027654.1 MGP_AJ_G0017928.1 mouse_genomes_project 11 245700 247308 + Pik3ip1 protein_coding retained_intron MGP_AJ_T0027655.1 MGP_AJ_G0017928.1 mouse_genomes_project 11 245737 255320 + MGP_AJ_P0027655 Pik3ip1 protein_coding protein_coding MGP_AJ_T0027656.1 MGP_AJ_G0017928.1 mouse_genomes_project 11 246079 255338 + MGP_AJ_P0027656 Pik3ip1 protein_coding protein_coding MGP_AJ_T0027657.1 MGP_AJ_G0017928.1 mouse_genomes_project 11 246600 247589 + Pik3ip1 protein_coding processed_transcript MGP_AJ_T0027658.1 MGP_AJ_G0017928.1 mouse_genomes_project 11 248007 255651 + Pik3ip1 protein_coding processed_transcript MGP_AJ_T0003113.1 MGP_AJ_G0002892.1 mouse_genomes_project 11 2465329 2474779 + Gm11963 antisense antisense MGP_AJ_T0032390.1 MGP_AJ_G0019143.1 mouse_genomes_project 11 99466852 99478744 + Atp6v0a1 protein_coding processed_transcript MGP_AJ_T0032391.1 MGP_AJ_G0019143.1 mouse_genomes_project 11 99466852 99502161 + Atp6v0a1 protein_coding processed_transcript MGP_AJ_T0032392.1 MGP_AJ_G0019143.1 mouse_genomes_project 11 99466852 99519743 + MGP_AJ_P0032392 Atp6v0a1 protein_coding protein_coding MGP_AJ_T0032393.1 MGP_AJ_G0019143.1 mouse_genomes_project 11 99466852 99521038 + MGP_AJ_P0032393 Atp6v0a1 protein_coding protein_coding MGP_AJ_T0032394.1 MGP_AJ_G0019143.1 mouse_genomes_project 11 99466887 99521032 + MGP_AJ_P0032394 Atp6v0a1 protein_coding protein_coding MGP_AJ_T0032395.1 MGP_AJ_G0019143.1 mouse_genomes_project 11 99468056 99477849 + MGP_AJ_P0032395 Atp6v0a1 protein_coding protein_coding MGP_AJ_T0032396.1 MGP_AJ_G0019143.1 mouse_genomes_project 11 99469228 99521038 + MGP_AJ_P0032396 Atp6v0a1 protein_coding protein_coding MGP_AJ_T0032397.1 MGP_AJ_G0019143.1 mouse_genomes_project 11 99478470 99484834 + Atp6v0a1 protein_coding processed_transcript MGP_AJ_T0032398.1 MGP_AJ_G0019143.1 mouse_genomes_project 11 99497183 99506570 + Atp6v0a1 protein_coding processed_transcript MGP_AJ_T0032399.1 MGP_AJ_G0019143.1 mouse_genomes_project 11 99501152 99502164 + Atp6v0a1 protein_coding processed_transcript MGP_AJ_T0012556.1 MGP_AJ_G0010651.1 mouse_genomes_project 11 27940884 27941864 - processed_pseudogene processed_pseudogene MGP_AJ_T0030314.1 MGP_AJ_G0018583.1 mouse_genomes_project 11 68621323 68630028 + MGP_AJ_P0030314 Zfp3 protein_coding protein_coding MGP_AJ_T0012769.1 MGP_AJ_G0010864.1 mouse_genomes_project 11 107667292 107668423 + processed_pseudogene processed_pseudogene MGP_AJ_T0011794.1 MGP_AJ_G0009915.1 mouse_genomes_project 11 71661606 71662667 - MGP_AJ_P0011794 Olfr388-ps1 polymorphic_pseudogene polymorphic_pseudogene MGP_AJ_T0031829.1 MGP_AJ_G0018968.1 mouse_genomes_project 11 94477311 94480444 + MGP_AJ_P0031829 Hoxb13 protein_coding protein_coding MGP_AJ_T0030703.1 MGP_AJ_G0018688.1 mouse_genomes_project 11 73655095 73688995 + MGP_AJ_P0030703 Ywhae protein_coding protein_coding MGP_AJ_T0030704.1 MGP_AJ_G0018688.1 mouse_genomes_project 11 73655139 73687775 + MGP_AJ_P0030704 Ywhae protein_coding nonsense_mediated_decay MGP_AJ_T0030705.1 MGP_AJ_G0018688.1 mouse_genomes_project 11 73655187 73679701 + Ywhae protein_coding retained_intron MGP_AJ_T0030706.1 MGP_AJ_G0018688.1 mouse_genomes_project 11 73655374 73679457 + MGP_AJ_P0030706 Ywhae protein_coding protein_coding MGP_AJ_T0030707.1 MGP_AJ_G0018688.1 mouse_genomes_project 11 73674183 73681899 + Ywhae protein_coding retained_intron MGP_AJ_T0009662.1 MGP_AJ_G0007784.1 mouse_genomes_project 11 25764851 25764937 + Mir216b miRNA miRNA MGP_AJ_T0029256.1 MGP_AJ_G0018347.1 mouse_genomes_project 11 56373938 56388700 + MGP_AJ_P0029256 Gm12258 protein_coding protein_coding MGP_AJ_T0029257.1 MGP_AJ_G0018347.1 mouse_genomes_project 11 56373957 56378153 + Gm12258 protein_coding processed_transcript MGP_AJ_T0029185.1 MGP_AJ_G0018311.1 mouse_genomes_project 11 55490547 55543301 + MGP_AJ_P0029185 Larp1 protein_coding protein_coding MGP_AJ_T0029186.1 MGP_AJ_G0018311.1 mouse_genomes_project 11 55490547 55543304 + MGP_AJ_P0029186 Larp1 protein_coding protein_coding MGP_AJ_T0029187.1 MGP_AJ_G0018311.1 mouse_genomes_project 11 55522807 55524207 + Larp1 protein_coding retained_intron MGP_AJ_T0031561.1 MGP_AJ_G0018900.1 mouse_genomes_project 11 87525711 87527406 - MGP_AJ_P0031561 Nog protein_coding protein_coding MGP_AJ_T0031364.1 MGP_AJ_G0018851.1 mouse_genomes_project 11 84019948 84023366 - MGP_AJ_P0031364 Gm11444 protein_coding protein_coding MGP_AJ_T0029888.1 MGP_AJ_G0018491.1 mouse_genomes_project 11 66948845 66962680 + MGP_AJ_P0029888 Alox12b protein_coding protein_coding MGP_AJ_T0003204.1 MGP_AJ_G0002968.1 mouse_genomes_project 11 61714082 61717897 + 9630013K17Rik antisense antisense MGP_AJ_T0033107.1 MGP_AJ_G0019289.1 mouse_genomes_project 11 106198029 106230504 + Helz protein_coding processed_transcript MGP_AJ_T0033108.1 MGP_AJ_G0019289.1 mouse_genomes_project 11 106198055 106324554 + MGP_AJ_P0033108 Helz protein_coding protein_coding MGP_AJ_T0033109.1 MGP_AJ_G0019289.1 mouse_genomes_project 11 106198059 106339170 + MGP_AJ_P0033109 Helz protein_coding protein_coding MGP_AJ_T0033110.1 MGP_AJ_G0019289.1 mouse_genomes_project 11 106198067 106346056 + MGP_AJ_P0033110 Helz protein_coding protein_coding MGP_AJ_T0033111.1 MGP_AJ_G0019289.1 mouse_genomes_project 11 106279560 106324554 + MGP_AJ_P0033111 Helz protein_coding protein_coding MGP_AJ_T0033112.1 MGP_AJ_G0019289.1 mouse_genomes_project 11 106286785 106298371 + Helz protein_coding processed_transcript MGP_AJ_T0033113.1 MGP_AJ_G0019289.1 mouse_genomes_project 11 106323318 106325252 + Helz protein_coding processed_transcript MGP_AJ_T0033114.1 MGP_AJ_G0019289.1 mouse_genomes_project 11 106325217 106338740 + Helz protein_coding processed_transcript MGP_AJ_T0029817.1 MGP_AJ_G0018478.1 mouse_genomes_project 11 66732273 66744175 - MGP_AJ_P0029817 Arhgef15 protein_coding protein_coding MGP_AJ_T0029818.1 MGP_AJ_G0018478.1 mouse_genomes_project 11 66732275 66747038 - MGP_AJ_P0029818 Arhgef15 protein_coding protein_coding MGP_AJ_T0029819.1 MGP_AJ_G0018478.1 mouse_genomes_project 11 66733645 66736499 - Arhgef15 protein_coding processed_transcript MGP_AJ_T0029820.1 MGP_AJ_G0018478.1 mouse_genomes_project 11 66735419 66736926 - Arhgef15 protein_coding processed_transcript MGP_AJ_T0029821.1 MGP_AJ_G0018478.1 mouse_genomes_project 11 66735565 66736766 - Arhgef15 protein_coding processed_transcript MGP_AJ_T0029822.1 MGP_AJ_G0018478.1 mouse_genomes_project 11 66737333 66741275 - Arhgef15 protein_coding retained_intron MGP_AJ_T0031019.1 MGP_AJ_G0018758.1 mouse_genomes_project 11 76908009 76947472 + MGP_AJ_P0031019 Nos2 protein_coding protein_coding MGP_AJ_T0030386.1 MGP_AJ_G0018596.1 mouse_genomes_project 11 69933819 69935070 + MGP_AJ_P0030386 Fam64a protein_coding protein_coding MGP_AJ_T0030387.1 MGP_AJ_G0018596.1 mouse_genomes_project 11 69934242 69939157 + MGP_AJ_P0030387 Fam64a protein_coding protein_coding MGP_AJ_T0030388.1 MGP_AJ_G0018596.1 mouse_genomes_project 11 69934289 69935452 + Fam64a protein_coding processed_transcript MGP_AJ_T0030389.1 MGP_AJ_G0018596.1 mouse_genomes_project 11 69934311 69937880 + Fam64a protein_coding processed_transcript MGP_AJ_T0030390.1 MGP_AJ_G0018596.1 mouse_genomes_project 11 69934709 69936826 + MGP_AJ_P0030390 Fam64a protein_coding protein_coding MGP_AJ_T0003305.1 MGP_AJ_G0003047.1 mouse_genomes_project 11 100903628 100905099 - Bloodlinc antisense antisense MGP_AJ_T0009745.1 MGP_AJ_G0007867.1 mouse_genomes_project 11 96609586 96609643 + Mir5119 miRNA miRNA MGP_AJ_T0100563.1 MGP_AJ_G0038529.1 mouse_genomes_project 11 1995491 1995588 + Gm24958 snoRNA snoRNA MGP_AJ_T0029302.1 MGP_AJ_G0018366.1 mouse_genomes_project 11 56974485 57016709 - MGP_AJ_P0029302 Snap47 protein_coding protein_coding MGP_AJ_T0029303.1 MGP_AJ_G0018366.1 mouse_genomes_project 11 56974495 57016717 - MGP_AJ_P0029303 Snap47 protein_coding protein_coding MGP_AJ_T0029304.1 MGP_AJ_G0018366.1 mouse_genomes_project 11 56996128 57016709 - MGP_AJ_P0029304 Snap47 protein_coding protein_coding MGP_AJ_T0029305.1 MGP_AJ_G0018366.1 mouse_genomes_project 11 57005187 57016709 - MGP_AJ_P0029305 Snap47 protein_coding protein_coding MGP_AJ_T0029306.1 MGP_AJ_G0018366.1 mouse_genomes_project 11 57005409 57014388 - MGP_AJ_P0029306 Snap47 protein_coding protein_coding MGP_AJ_T0029307.1 MGP_AJ_G0018366.1 mouse_genomes_project 11 57005602 57017896 - MGP_AJ_P0029307 Snap47 protein_coding protein_coding MGP_AJ_T0012627.1 MGP_AJ_G0010722.1 mouse_genomes_project 11 55886633 55887425 - processed_pseudogene processed_pseudogene MGP_AJ_T0028976.1 MGP_AJ_G0018254.1 mouse_genomes_project 11 49776207 49784639 + 9530068E07Rik protein_coding processed_transcript MGP_AJ_T0028977.1 MGP_AJ_G0018254.1 mouse_genomes_project 11 49776207 49789916 + MGP_AJ_P0028977 9530068E07Rik protein_coding protein_coding MGP_AJ_T0028978.1 MGP_AJ_G0018254.1 mouse_genomes_project 11 49776207 49789921 + MGP_AJ_P0028978 9530068E07Rik protein_coding protein_coding MGP_AJ_T0028979.1 MGP_AJ_G0018254.1 mouse_genomes_project 11 49776425 49783671 + 9530068E07Rik protein_coding processed_transcript MGP_AJ_T0012676.1 MGP_AJ_G0010771.1 mouse_genomes_project 11 72227376 72228298 + processed_pseudogene processed_pseudogene MGP_AJ_T0017204.1 MGP_AJ_G0015154.1 mouse_genomes_project 11 65690330 65716991 + 9130017K11Rik processed_transcript processed_transcript MGP_AJ_T0017205.1 MGP_AJ_G0015154.1 mouse_genomes_project 11 65691202 65692619 + 9130017K11Rik processed_transcript processed_transcript MGP_AJ_T0006313.1 MGP_AJ_G0005265.1 mouse_genomes_project 11 86964693 86967479 - Gm11493 lincRNA lincRNA MGP_AJ_T0003130.1 MGP_AJ_G0002903.1 mouse_genomes_project 11 15897150 15898489 + Gm16141 antisense antisense MGP_AJ_T0011296.1 MGP_AJ_G0009418.1 mouse_genomes_project 11 18123538 18123807 - Gm22600 misc_RNA misc_RNA MGP_AJ_T0012737.1 MGP_AJ_G0010832.1 mouse_genomes_project 11 96398243 96398399 + processed_pseudogene processed_pseudogene MGP_AJ_T0012530.1 MGP_AJ_G0010625.1 mouse_genomes_project 11 19707938 19708375 - processed_pseudogene processed_pseudogene MGP_AJ_T0033664.1 MGP_AJ_G0019402.1 mouse_genomes_project 11 115500311 115509162 - MGP_AJ_P0033664 Cygb protein_coding protein_coding MGP_AJ_T0012475.1 MGP_AJ_G0010570.1 mouse_genomes_project 11 3748694 3750155 - processed_pseudogene processed_pseudogene MGP_AJ_T0030549.1 MGP_AJ_G0018653.1 mouse_genomes_project 11 72106745 72116859 + MGP_AJ_P0030549 protein_coding protein_coding MGP_AJ_T0030550.1 MGP_AJ_G0018653.1 mouse_genomes_project 11 72106769 72113736 + protein_coding processed_transcript MGP_AJ_T0030551.1 MGP_AJ_G0018653.1 mouse_genomes_project 11 72115996 72116859 + MGP_AJ_P0030551 protein_coding protein_coding MGP_AJ_T0032388.1 MGP_AJ_G0019142.1 mouse_genomes_project 11 99412090 99426013 - MGP_AJ_P0032388 Ptrf protein_coding protein_coding MGP_AJ_T0032389.1 MGP_AJ_G0019142.1 mouse_genomes_project 11 99419525 99425677 - Ptrf protein_coding processed_transcript MGP_AJ_T0034061.1 MGP_AJ_G0019484.1 mouse_genomes_project 11 119528451 119535050 - Sirt7 protein_coding retained_intron MGP_AJ_T0034062.1 MGP_AJ_G0019484.1 mouse_genomes_project 11 119528451 119535321 - Sirt7 protein_coding retained_intron MGP_AJ_T0034063.1 MGP_AJ_G0019484.1 mouse_genomes_project 11 119528451 119535095 - MGP_AJ_P0034063 Sirt7 protein_coding protein_coding MGP_AJ_T0034064.1 MGP_AJ_G0019484.1 mouse_genomes_project 11 119528453 119535080 - Sirt7 protein_coding retained_intron MGP_AJ_T0034065.1 MGP_AJ_G0019484.1 mouse_genomes_project 11 119528467 119535101 - Sirt7 protein_coding retained_intron MGP_AJ_T0034066.1 MGP_AJ_G0019484.1 mouse_genomes_project 11 119528499 119531058 - MGP_AJ_P0034066 Sirt7 protein_coding protein_coding MGP_AJ_T0034067.1 MGP_AJ_G0019484.1 mouse_genomes_project 11 119528848 119529449 - Sirt7 protein_coding processed_transcript MGP_AJ_T0034068.1 MGP_AJ_G0019484.1 mouse_genomes_project 11 119531079 119535071 - Sirt7 protein_coding processed_transcript MGP_AJ_T0034069.1 MGP_AJ_G0019484.1 mouse_genomes_project 11 119532070 119532883 - Sirt7 protein_coding retained_intron MGP_AJ_T0034070.1 MGP_AJ_G0019484.1 mouse_genomes_project 11 119533360 119535073 - Sirt7 protein_coding retained_intron MGP_AJ_T0034071.1 MGP_AJ_G0019484.1 mouse_genomes_project 11 119534070 119535065 - MGP_AJ_P0034071 Sirt7 protein_coding protein_coding MGP_AJ_T0009731.1 MGP_AJ_G0007853.1 mouse_genomes_project 11 86572855 86572947 + Mir378b miRNA miRNA MGP_AJ_T0012640.1 MGP_AJ_G0010735.1 mouse_genomes_project 11 58822295 58823012 - processed_pseudogene processed_pseudogene MGP_AJ_T0028168.1 MGP_AJ_G0018046.1 mouse_genomes_project 11 18482707 18498121 - MGP_AJ_P0028168 Mdh1 protein_coding protein_coding MGP_AJ_T0028169.1 MGP_AJ_G0018046.1 mouse_genomes_project 11 18484410 18485650 - Mdh1 protein_coding processed_transcript MGP_AJ_T0028170.1 MGP_AJ_G0018046.1 mouse_genomes_project 11 18485442 18490128 - Mdh1 protein_coding processed_transcript MGP_AJ_T0028171.1 MGP_AJ_G0018046.1 mouse_genomes_project 11 18488816 18498295 - MGP_AJ_P0028171 Mdh1 protein_coding protein_coding MGP_AJ_T0029095.1 MGP_AJ_G0018285.1 mouse_genomes_project 11 51900239 51981414 + MGP_AJ_P0029095 Fnip1 protein_coding protein_coding MGP_AJ_T0029096.1 MGP_AJ_G0018285.1 mouse_genomes_project 11 51926929 51965649 + MGP_AJ_P0029096 Fnip1 protein_coding protein_coding MGP_AJ_T0006382.1 MGP_AJ_G0005318.1 mouse_genomes_project 11 120015321 120015888 - Gm11791 lincRNA lincRNA MGP_AJ_T0032400.1 MGP_AJ_G0019144.1 mouse_genomes_project 11 99527299 99534949 + MGP_AJ_P0032400 Naglu protein_coding protein_coding MGP_AJ_T0032401.1 MGP_AJ_G0019144.1 mouse_genomes_project 11 99528829 99533848 + Naglu protein_coding processed_transcript MGP_AJ_T0032402.1 MGP_AJ_G0019144.1 mouse_genomes_project 11 99529229 99534083 + Naglu protein_coding processed_transcript MGP_AJ_T0098535.1 MGP_AJ_G0036519.1 mouse_genomes_project 11 20556694 20556811 - Gm23114 rRNA rRNA MGP_AJ_T0031960.1 MGP_AJ_G0019000.1 mouse_genomes_project 11 95807875 95817429 - MGP_AJ_P0031960 4933428G20Rik protein_coding protein_coding MGP_AJ_T0006267.1 MGP_AJ_G0005234.1 mouse_genomes_project 11 68605744 68612263 - Gm12320 lincRNA lincRNA MGP_AJ_T0012571.1 MGP_AJ_G0010666.1 mouse_genomes_project 11 37600480 37601000 + processed_pseudogene processed_pseudogene MGP_AJ_T0032562.1 MGP_AJ_G0019180.1 mouse_genomes_project 11 100278345 100294231 - MGP_AJ_P0032562 Etv4 protein_coding protein_coding MGP_AJ_T0032563.1 MGP_AJ_G0019180.1 mouse_genomes_project 11 100278350 100294292 - MGP_AJ_P0032563 Etv4 protein_coding protein_coding MGP_AJ_T0032564.1 MGP_AJ_G0019180.1 mouse_genomes_project 11 100278350 100294292 - MGP_AJ_P0032564 Etv4 protein_coding protein_coding MGP_AJ_T0032565.1 MGP_AJ_G0019180.1 mouse_genomes_project 11 100278956 100280784 - Etv4 protein_coding processed_transcript MGP_AJ_T0032566.1 MGP_AJ_G0019180.1 mouse_genomes_project 11 100282289 100293782 - Etv4 protein_coding processed_transcript MGP_AJ_T0032567.1 MGP_AJ_G0019180.1 mouse_genomes_project 11 100282428 100294179 - Etv4 protein_coding processed_transcript MGP_AJ_T0032568.1 MGP_AJ_G0019180.1 mouse_genomes_project 11 100282459 100293412 - Etv4 protein_coding processed_transcript MGP_AJ_T0032569.1 MGP_AJ_G0019180.1 mouse_genomes_project 11 100282678 100294143 - Etv4 protein_coding processed_transcript MGP_AJ_T0032570.1 MGP_AJ_G0019180.1 mouse_genomes_project 11 100282765 100294181 - Etv4 protein_coding processed_transcript MGP_AJ_T0032571.1 MGP_AJ_G0019180.1 mouse_genomes_project 11 100282765 100293309 - Etv4 protein_coding processed_transcript MGP_AJ_T0032572.1 MGP_AJ_G0019180.1 mouse_genomes_project 11 100282805 100294231 - Etv4 protein_coding processed_transcript MGP_AJ_T0032573.1 MGP_AJ_G0019180.1 mouse_genomes_project 11 100293176 100293769 - Etv4 protein_coding processed_transcript MGP_AJ_T0028373.1 MGP_AJ_G0018088.1 mouse_genomes_project 11 27493326 27644227 - MGP_AJ_P0028373 Acyp2 protein_coding protein_coding MGP_AJ_T0033974.1 MGP_AJ_G0019465.1 mouse_genomes_project 11 119275978 119285657 - Faap100 protein_coding retained_intron MGP_AJ_T0033975.1 MGP_AJ_G0019465.1 mouse_genomes_project 11 119276485 119285686 - MGP_AJ_P0033975 Faap100 protein_coding protein_coding MGP_AJ_T0033976.1 MGP_AJ_G0019465.1 mouse_genomes_project 11 119276804 119277812 - Faap100 protein_coding retained_intron MGP_AJ_T0033977.1 MGP_AJ_G0019465.1 mouse_genomes_project 11 119279894 119281091 - Faap100 protein_coding processed_transcript MGP_AJ_T0033978.1 MGP_AJ_G0019465.1 mouse_genomes_project 11 119279949 119285658 - Faap100 protein_coding retained_intron MGP_AJ_T0033979.1 MGP_AJ_G0019465.1 mouse_genomes_project 11 119283093 119285631 - Faap100 protein_coding processed_transcript MGP_AJ_T0033980.1 MGP_AJ_G0019465.1 mouse_genomes_project 11 119283909 119285396 - Faap100 protein_coding processed_transcript MGP_AJ_T0033981.1 MGP_AJ_G0019465.1 mouse_genomes_project 11 119284246 119285657 - Faap100 protein_coding processed_transcript MGP_AJ_T0031622.1 MGP_AJ_G0018915.1 mouse_genomes_project 11 92180369 92198650 - MGP_AJ_P0031622 Gm20390 protein_coding protein_coding MGP_AJ_T0028692.1 MGP_AJ_G0018176.1 mouse_genomes_project 11 45930324 45941274 - MGP_AJ_P0028692 Trim41 protein_coding protein_coding MGP_AJ_T0028693.1 MGP_AJ_G0018176.1 mouse_genomes_project 11 45932306 45936316 - MGP_AJ_P0028693 Trim41 protein_coding protein_coding MGP_AJ_T0028694.1 MGP_AJ_G0018176.1 mouse_genomes_project 11 45933017 45940874 - MGP_AJ_P0028694 Trim41 protein_coding protein_coding MGP_AJ_T0028695.1 MGP_AJ_G0018176.1 mouse_genomes_project 11 45933119 45940152 - MGP_AJ_P0028695 Trim41 protein_coding protein_coding MGP_AJ_T0028823.1 MGP_AJ_G0018216.1 mouse_genomes_project 11 47636659 47641897 + MGP_AJ_P0028823 Cby3 protein_coding protein_coding MGP_AJ_T0028824.1 MGP_AJ_G0018216.1 mouse_genomes_project 11 47639958 47641897 + MGP_AJ_P0028824 Cby3 protein_coding protein_coding MGP_AJ_T0031596.1 MGP_AJ_G0018911.1 mouse_genomes_project 11 91324191 91326028 + Car10 protein_coding processed_transcript MGP_AJ_T0031597.1 MGP_AJ_G0018911.1 mouse_genomes_project 11 91324567 91727874 + MGP_AJ_P0031597 Car10 protein_coding protein_coding MGP_AJ_T0031598.1 MGP_AJ_G0018911.1 mouse_genomes_project 11 91324567 91605130 + MGP_AJ_P0031598 Car10 protein_coding protein_coding MGP_AJ_T0031599.1 MGP_AJ_G0018911.1 mouse_genomes_project 11 91324567 91834631 + MGP_AJ_P0031599 Car10 protein_coding protein_coding MGP_AJ_T0031600.1 MGP_AJ_G0018911.1 mouse_genomes_project 11 91324577 91834164 + MGP_AJ_P0031600 Car10 protein_coding protein_coding MGP_AJ_T0031601.1 MGP_AJ_G0018911.1 mouse_genomes_project 11 91325451 91414072 + MGP_AJ_P0031601 Car10 protein_coding protein_coding MGP_AJ_T0031602.1 MGP_AJ_G0018911.1 mouse_genomes_project 11 91325451 91834635 + MGP_AJ_P0031602 Car10 protein_coding protein_coding MGP_AJ_T0017251.1 MGP_AJ_G0015179.1 mouse_genomes_project 11 96420984 96421952 - Gm11632 processed_transcript processed_transcript MGP_AJ_T0032788.1 MGP_AJ_G0019219.1 mouse_genomes_project 11 101482964 101490397 - MGP_AJ_P0032788 C1ql1 protein_coding protein_coding MGP_AJ_T0029002.1 MGP_AJ_G0018262.1 mouse_genomes_project 11 50856215 50858522 - MGP_AJ_P0029002 Gm10447 protein_coding protein_coding MGP_AJ_T0031461.1 MGP_AJ_G0018874.1 mouse_genomes_project 11 85775651 85799630 + MGP_AJ_P0031461 Mtmr4 protein_coding protein_coding MGP_AJ_T0031462.1 MGP_AJ_G0018874.1 mouse_genomes_project 11 85775708 85799630 + MGP_AJ_P0031462 Mtmr4 protein_coding protein_coding MGP_AJ_T0031463.1 MGP_AJ_G0018874.1 mouse_genomes_project 11 85775715 85782442 + MGP_AJ_P0031463 Mtmr4 protein_coding protein_coding MGP_AJ_T0031464.1 MGP_AJ_G0018874.1 mouse_genomes_project 11 85775953 85781228 + MGP_AJ_P0031464 Mtmr4 protein_coding protein_coding MGP_AJ_T0031465.1 MGP_AJ_G0018874.1 mouse_genomes_project 11 85776386 85798500 + MGP_AJ_P0031465 Mtmr4 protein_coding protein_coding MGP_AJ_T0031466.1 MGP_AJ_G0018874.1 mouse_genomes_project 11 85779132 85784574 + MGP_AJ_P0031466 Mtmr4 protein_coding protein_coding MGP_AJ_T0011791.1 MGP_AJ_G0009912.1 mouse_genomes_project 11 57185897 57187166 + MGP_AJ_P0011791 polymorphic_pseudogene polymorphic_pseudogene MGP_AJ_T0033652.1 MGP_AJ_G0019399.1 mouse_genomes_project 11 115389598 115395876 - Ube2o protein_coding processed_transcript MGP_AJ_T0033653.1 MGP_AJ_G0019399.1 mouse_genomes_project 11 115389598 115433542 - MGP_AJ_P0033653 Ube2o protein_coding protein_coding MGP_AJ_T0033654.1 MGP_AJ_G0019399.1 mouse_genomes_project 11 115397656 115400756 - Ube2o protein_coding processed_transcript MGP_AJ_T0100601.1 MGP_AJ_G0038567.1 mouse_genomes_project 11 67483868 67484011 - Gm24029 snoRNA snoRNA MGP_AJ_T0030023.1 MGP_AJ_G0018524.1 mouse_genomes_project 11 67624543 67626565 - MGP_AJ_P0030023 Tmem102 protein_coding protein_coding MGP_AJ_T0003297.1 MGP_AJ_G0003039.1 mouse_genomes_project 11 99807296 99818317 - Gm28156 antisense antisense MGP_AJ_T0030452.1 MGP_AJ_G0018613.1 mouse_genomes_project 11 70678090 70696701 - MGP_AJ_P0030452 Cyb5d2 protein_coding protein_coding MGP_AJ_T0030453.1 MGP_AJ_G0018613.1 mouse_genomes_project 11 70679598 70696547 - MGP_AJ_P0030453 Cyb5d2 protein_coding protein_coding MGP_AJ_T0030454.1 MGP_AJ_G0018613.1 mouse_genomes_project 11 70679737 70696939 - Cyb5d2 protein_coding processed_transcript MGP_AJ_T0030455.1 MGP_AJ_G0018613.1 mouse_genomes_project 11 70693733 70696686 - Cyb5d2 protein_coding retained_intron MGP_AJ_T0003177.1 MGP_AJ_G0002946.1 mouse_genomes_project 11 56415056 56416895 + Gm12256 antisense antisense MGP_AJ_T0031641.1 MGP_AJ_G0018920.1 mouse_genomes_project 11 92510255 92514439 + MGP_AJ_P0031641 protein_coding unknown_likely_coding MGP_AJ_T0031642.1 MGP_AJ_G0018920.1 mouse_genomes_project 11 92510288 92514439 + MGP_AJ_P0031642 protein_coding unknown_likely_coding MGP_AJ_T0031643.1 MGP_AJ_G0018920.1 mouse_genomes_project 11 92513110 92514439 + MGP_AJ_P0031643 protein_coding protein_coding MGP_AJ_T0012544.1 MGP_AJ_G0010639.1 mouse_genomes_project 11 26335876 26336081 - processed_pseudogene processed_pseudogene MGP_AJ_T0028104.1 MGP_AJ_G0018028.1 mouse_genomes_project 11 13952283 13955735 + MGP_AJ_P0028104 Cnrip1 protein_coding protein_coding MGP_AJ_T0028105.1 MGP_AJ_G0018028.1 mouse_genomes_project 11 13952500 13954972 + Cnrip1 protein_coding retained_intron MGP_AJ_T0028106.1 MGP_AJ_G0018028.1 mouse_genomes_project 11 13952515 13977092 + MGP_AJ_P0028106 Cnrip1 protein_coding protein_coding MGP_AJ_T0028646.1 MGP_AJ_G0018162.1 mouse_genomes_project 11 43371950 43490448 - MGP_AJ_P0028646 Cyfip2 protein_coding protein_coding MGP_AJ_T0028647.1 MGP_AJ_G0018162.1 mouse_genomes_project 11 43371950 43489947 - MGP_AJ_P0028647 Cyfip2 protein_coding protein_coding MGP_AJ_T0028648.1 MGP_AJ_G0018162.1 mouse_genomes_project 11 43371955 43489883 - MGP_AJ_P0028648 Cyfip2 protein_coding protein_coding MGP_AJ_T0028649.1 MGP_AJ_G0018162.1 mouse_genomes_project 11 43374171 43448333 - MGP_AJ_P0028649 Cyfip2 protein_coding protein_coding MGP_AJ_T0028651.1 MGP_AJ_G0018162.1 mouse_genomes_project 11 43469175 43489809 - MGP_AJ_P0028651 Cyfip2 protein_coding protein_coding MGP_AJ_T0012746.1 MGP_AJ_G0010841.1 mouse_genomes_project 11 99957677 99957973 + processed_pseudogene processed_pseudogene MGP_AJ_T0100593.1 MGP_AJ_G0038559.1 mouse_genomes_project 11 53961111 53961207 + Gm22603 snoRNA snoRNA MGP_AJ_T0030418.1 MGP_AJ_G0018605.1 mouse_genomes_project 11 70235045 70253376 - MGP_AJ_P0030418 Tekt1 protein_coding protein_coding MGP_AJ_T0030419.1 MGP_AJ_G0018605.1 mouse_genomes_project 11 70235045 70252799 - MGP_AJ_P0030419 Tekt1 protein_coding protein_coding MGP_AJ_T0030420.1 MGP_AJ_G0018605.1 mouse_genomes_project 11 70235052 70253945 - MGP_AJ_P0030420 Tekt1 protein_coding protein_coding MGP_AJ_T0006373.1 MGP_AJ_G0005309.1 mouse_genomes_project 11 117681662 117684118 + Gm11750 lincRNA lincRNA MGP_AJ_T0033175.1 MGP_AJ_G0019303.1 mouse_genomes_project 11 108144016 108160642 + Arsg protein_coding processed_transcript MGP_AJ_T0033176.1 MGP_AJ_G0019303.1 mouse_genomes_project 11 108144016 108246121 + MGP_AJ_P0033176 Arsg protein_coding protein_coding MGP_AJ_T0033177.1 MGP_AJ_G0019303.1 mouse_genomes_project 11 108155665 108160540 + Arsg protein_coding processed_transcript MGP_AJ_T0033178.1 MGP_AJ_G0019303.1 mouse_genomes_project 11 108156248 108246126 + MGP_AJ_P0033178 Arsg protein_coding protein_coding MGP_AJ_T0033179.1 MGP_AJ_G0019303.1 mouse_genomes_project 11 108215655 108246126 + MGP_AJ_P0033179 Arsg protein_coding protein_coding MGP_AJ_T0099365.1 MGP_AJ_G0037331.1 mouse_genomes_project 11 94198219 94198344 + Gm24725 snRNA snRNA MGP_AJ_T0003313.1 MGP_AJ_G0003055.1 mouse_genomes_project 11 104586982 104606637 - Gm11651 antisense antisense MGP_AJ_T0003314.1 MGP_AJ_G0003055.1 mouse_genomes_project 11 104593035 104606609 - Gm11651 antisense antisense MGP_AJ_T0012743.1 MGP_AJ_G0010838.1 mouse_genomes_project 11 98393571 98394030 - processed_pseudogene processed_pseudogene MGP_AJ_T0033259.1 MGP_AJ_G0019323.1 mouse_genomes_project 11 112495400 112519508 - MGP_AJ_P0033259 Cdc42ep4 protein_coding protein_coding MGP_AJ_T0033260.1 MGP_AJ_G0019323.1 mouse_genomes_project 11 112495402 112520075 - MGP_AJ_P0033260 Cdc42ep4 protein_coding protein_coding MGP_AJ_T0033261.1 MGP_AJ_G0019323.1 mouse_genomes_project 11 112497517 112507843 - MGP_AJ_P0033261 Cdc42ep4 protein_coding protein_coding MGP_AJ_T0033262.1 MGP_AJ_G0019323.1 mouse_genomes_project 11 112497839 112519344 - MGP_AJ_P0033262 Cdc42ep4 protein_coding protein_coding MGP_AJ_T0003348.1 MGP_AJ_G0003083.1 mouse_genomes_project 11 116103913 116109820 - Gm16045 antisense antisense MGP_AJ_T0012767.1 MGP_AJ_G0010862.1 mouse_genomes_project 11 107070281 107070765 + processed_pseudogene processed_pseudogene MGP_AJ_T0032978.1 MGP_AJ_G0019262.1 mouse_genomes_project 11 104780721 104785012 - MGP_AJ_P0032978 Limd2 protein_coding protein_coding MGP_AJ_T0032979.1 MGP_AJ_G0019262.1 mouse_genomes_project 11 104783183 104784279 - Limd2 protein_coding processed_transcript MGP_AJ_T0032980.1 MGP_AJ_G0019262.1 mouse_genomes_project 11 104783300 104784797 - MGP_AJ_P0032980 Limd2 protein_coding protein_coding MGP_AJ_T0032981.1 MGP_AJ_G0019262.1 mouse_genomes_project 11 104783520 104785730 - MGP_AJ_P0032981 Limd2 protein_coding protein_coding MGP_AJ_T0006186.1 MGP_AJ_G0005165.1 mouse_genomes_project 11 19402616 19411024 + Gm12051 lincRNA lincRNA MGP_AJ_T0028112.1 MGP_AJ_G0018032.1 mouse_genomes_project 11 14158972 14164366 + C1d protein_coding processed_transcript MGP_AJ_T0028113.1 MGP_AJ_G0018032.1 mouse_genomes_project 11 14158985 14165750 + C1d protein_coding processed_transcript MGP_AJ_T0028114.1 MGP_AJ_G0018032.1 mouse_genomes_project 11 14158987 14170632 + MGP_AJ_P0028114 C1d protein_coding protein_coding MGP_AJ_T0028115.1 MGP_AJ_G0018032.1 mouse_genomes_project 11 14159081 14168080 + MGP_AJ_P0028115 C1d protein_coding protein_coding MGP_AJ_T0028116.1 MGP_AJ_G0018032.1 mouse_genomes_project 11 14165076 14168016 + C1d protein_coding processed_transcript MGP_AJ_T0012747.1 MGP_AJ_G0010842.1 mouse_genomes_project 11 100449957 100450356 + processed_pseudogene processed_pseudogene MGP_AJ_T0031573.1 MGP_AJ_G0018906.1 mouse_genomes_project 11 88550603 88605809 - MGP_AJ_P0031573 Hlf protein_coding protein_coding MGP_AJ_T0031574.1 MGP_AJ_G0018906.1 mouse_genomes_project 11 88553056 88604601 - Hlf protein_coding processed_transcript MGP_AJ_T0031575.1 MGP_AJ_G0018906.1 mouse_genomes_project 11 88553208 88603114 - Hlf protein_coding processed_transcript MGP_AJ_T0031576.1 MGP_AJ_G0018906.1 mouse_genomes_project 11 88554894 88596850 - Hlf protein_coding processed_transcript MGP_AJ_T0031577.1 MGP_AJ_G0018906.1 mouse_genomes_project 11 88559615 88602877 - MGP_AJ_P0031577 Hlf protein_coding protein_coding MGP_AJ_T0031578.1 MGP_AJ_G0018906.1 mouse_genomes_project 11 88602826 88604501 - Hlf protein_coding processed_transcript MGP_AJ_T0012641.1 MGP_AJ_G0010736.1 mouse_genomes_project 11 58897255 58897701 - processed_pseudogene processed_pseudogene MGP_AJ_T0006378.1 MGP_AJ_G0005314.1 mouse_genomes_project 11 118116650 118120036 + Gm11752 lincRNA lincRNA MGP_AJ_T0003336.1 MGP_AJ_G0003073.1 mouse_genomes_project 11 108474126 108479775 + Gm11683 antisense antisense MGP_AJ_T0030978.1 MGP_AJ_G0018745.1 mouse_genomes_project 11 76364884 76389965 - MGP_AJ_P0030978 Slc13a2 protein_coding protein_coding MGP_AJ_T0012455.1 MGP_AJ_G0010550.1 mouse_genomes_project 11 387688 388164 - processed_pseudogene processed_pseudogene MGP_AJ_T0027771.1 MGP_AJ_G0017954.1 mouse_genomes_project 11 1202122 1217346 + MGP_AJ_P0027771 Lif protein_coding protein_coding MGP_AJ_T0027772.1 MGP_AJ_G0017954.1 mouse_genomes_project 11 1211634 1213095 + Lif protein_coding processed_transcript MGP_AJ_T0027773.1 MGP_AJ_G0017954.1 mouse_genomes_project 11 1211933 1217346 + MGP_AJ_P0027773 Lif protein_coding protein_coding MGP_AJ_T0033790.1 MGP_AJ_G0019430.1 mouse_genomes_project 11 117014234 117132242 - MGP_AJ_P0033790 Cyth1 protein_coding protein_coding MGP_AJ_T0033791.1 MGP_AJ_G0019430.1 mouse_genomes_project 11 117047296 117096093 - MGP_AJ_P0033791 Cyth1 protein_coding protein_coding MGP_AJ_T0033792.1 MGP_AJ_G0019430.1 mouse_genomes_project 11 117047296 117132332 - MGP_AJ_P0033792 Cyth1 protein_coding protein_coding MGP_AJ_T0033793.1 MGP_AJ_G0019430.1 mouse_genomes_project 11 117047305 117132300 - MGP_AJ_P0033793 Cyth1 protein_coding protein_coding MGP_AJ_T0033794.1 MGP_AJ_G0019430.1 mouse_genomes_project 11 117068207 117110523 - Cyth1 protein_coding processed_transcript MGP_AJ_T0033795.1 MGP_AJ_G0019430.1 mouse_genomes_project 11 117068662 117102376 - Cyth1 protein_coding processed_transcript MGP_AJ_T0033796.1 MGP_AJ_G0019430.1 mouse_genomes_project 11 117068681 117096093 - MGP_AJ_P0033796 Cyth1 protein_coding protein_coding MGP_AJ_T0032184.1 MGP_AJ_G0019052.1 mouse_genomes_project 11 97574151 97595185 - MGP_AJ_P0032184 Smarce1 protein_coding unknown_likely_coding MGP_AJ_T0032185.1 MGP_AJ_G0019052.1 mouse_genomes_project 11 97574159 97595746 - MGP_AJ_P0032185 Smarce1 protein_coding protein_coding MGP_AJ_T0032186.1 MGP_AJ_G0019052.1 mouse_genomes_project 11 97575107 97578164 - Smarce1 protein_coding processed_transcript MGP_AJ_T0032187.1 MGP_AJ_G0019052.1 mouse_genomes_project 11 97583929 97585542 - Smarce1 protein_coding processed_transcript MGP_AJ_T0032188.1 MGP_AJ_G0019052.1 mouse_genomes_project 11 97584338 97595174 - Smarce1 protein_coding processed_transcript MGP_AJ_T0032189.1 MGP_AJ_G0019052.1 mouse_genomes_project 11 97584418 97595142 - Smarce1 protein_coding processed_transcript MGP_AJ_T0032190.1 MGP_AJ_G0019052.1 mouse_genomes_project 11 97590020 97595175 - Smarce1 protein_coding processed_transcript MGP_AJ_T0009718.1 MGP_AJ_G0007840.1 mouse_genomes_project 11 76029383 76029449 + Mir144 miRNA miRNA MGP_AJ_T0017187.1 MGP_AJ_G0015145.1 mouse_genomes_project 11 55263309 55270074 - 2010001A14Rik processed_transcript processed_transcript MGP_AJ_T0017188.1 MGP_AJ_G0015145.1 mouse_genomes_project 11 55263329 55270071 - 2010001A14Rik processed_transcript processed_transcript MGP_AJ_T0017189.1 MGP_AJ_G0015145.1 mouse_genomes_project 11 55263418 55270055 - 2010001A14Rik processed_transcript processed_transcript MGP_AJ_T0012502.1 MGP_AJ_G0010597.1 mouse_genomes_project 11 15403904 15405660 - processed_pseudogene processed_pseudogene MGP_AJ_T0032741.1 MGP_AJ_G0019208.1 mouse_genomes_project 11 101140321 101143991 + MGP_AJ_P0032741 Fzd2 protein_coding protein_coding MGP_AJ_T0032556.1 MGP_AJ_G0019178.1 mouse_genomes_project 11 100170319 100172614 + MGP_AJ_P0032556 Arl4d protein_coding protein_coding MGP_AJ_T0031562.1 MGP_AJ_G0018901.1 mouse_genomes_project 11 87617969 87647590 - MGP_AJ_P0031562 protein_coding protein_coding MGP_AJ_T0006201.1 MGP_AJ_G0005179.1 mouse_genomes_project 11 22222001 22247197 + Gm12069 lincRNA lincRNA MGP_AJ_T0009658.1 MGP_AJ_G0007780.1 mouse_genomes_project 11 20428962 20429053 - miRNA miRNA MGP_AJ_T0033120.1 MGP_AJ_G0019293.1 mouse_genomes_project 11 106589536 106998980 - MGP_AJ_P0033120 Prkca protein_coding protein_coding MGP_AJ_T0033121.1 MGP_AJ_G0019293.1 mouse_genomes_project 11 106594350 106636283 - MGP_AJ_P0033121 Prkca protein_coding protein_coding MGP_AJ_T0033122.1 MGP_AJ_G0019293.1 mouse_genomes_project 11 106635033 106673356 - Prkca protein_coding processed_transcript MGP_AJ_T0033123.1 MGP_AJ_G0019293.1 mouse_genomes_project 11 106846851 106998700 - Prkca protein_coding processed_transcript MGP_AJ_T0032249.1 MGP_AJ_G0019106.1 mouse_genomes_project 11 98487190 98491771 - Krt32 protein_coding processed_transcript MGP_AJ_T0032250.1 MGP_AJ_G0019106.1 mouse_genomes_project 11 98487199 98494541 - MGP_AJ_P0032250 Krt32 protein_coding protein_coding MGP_AJ_T0012694.1 MGP_AJ_G0010789.1 mouse_genomes_project 11 77457301 77457808 - processed_pseudogene processed_pseudogene MGP_AJ_T0030596.1 MGP_AJ_G0018667.1 mouse_genomes_project 11 72806835 72813715 + MGP_AJ_P0030596 Tsr1 protein_coding nonsense_mediated_decay MGP_AJ_T0030597.1 MGP_AJ_G0018667.1 mouse_genomes_project 11 72806842 72818117 + MGP_AJ_P0030597 Tsr1 protein_coding protein_coding MGP_AJ_T0030598.1 MGP_AJ_G0018667.1 mouse_genomes_project 11 72806862 72810627 + Tsr1 protein_coding retained_intron MGP_AJ_T0030599.1 MGP_AJ_G0018667.1 mouse_genomes_project 11 72806878 72817269 + MGP_AJ_P0030599 Tsr1 protein_coding nonsense_mediated_decay MGP_AJ_T0030600.1 MGP_AJ_G0018667.1 mouse_genomes_project 11 72810484 72812680 + Tsr1 protein_coding retained_intron MGP_AJ_T0030601.1 MGP_AJ_G0018667.1 mouse_genomes_project 11 72812744 72817089 + MGP_AJ_P0030601 Tsr1 protein_coding nonsense_mediated_decay MGP_AJ_T0030602.1 MGP_AJ_G0018667.1 mouse_genomes_project 11 72813985 72817118 + Tsr1 protein_coding retained_intron MGP_AJ_T0017164.1 MGP_AJ_G0015129.1 mouse_genomes_project 11 15731737 15741439 - 8430419K02Rik processed_transcript processed_transcript MGP_AJ_T0017165.1 MGP_AJ_G0015129.1 mouse_genomes_project 11 15731841 15756161 - 8430419K02Rik processed_transcript processed_transcript MGP_AJ_T0027808.1 MGP_AJ_G0017963.1 mouse_genomes_project 11 1827794 1847211 + MGP_AJ_P0027808 Nipsnap1 protein_coding protein_coding MGP_AJ_T0027809.1 MGP_AJ_G0017963.1 mouse_genomes_project 11 1827842 1846628 + MGP_AJ_P0027809 Nipsnap1 protein_coding nonsense_mediated_decay MGP_AJ_T0027810.1 MGP_AJ_G0017963.1 mouse_genomes_project 11 1827848 1837832 + Nipsnap1 protein_coding processed_transcript MGP_AJ_T0027811.1 MGP_AJ_G0017963.1 mouse_genomes_project 11 1836607 1842174 + MGP_AJ_P0027811 Nipsnap1 protein_coding protein_coding MGP_AJ_T0027812.1 MGP_AJ_G0017963.1 mouse_genomes_project 11 1836619 1843020 + Nipsnap1 protein_coding processed_transcript MGP_AJ_T0027813.1 MGP_AJ_G0017963.1 mouse_genomes_project 11 1836677 1837544 + Nipsnap1 protein_coding processed_transcript MGP_AJ_T0028763.1 MGP_AJ_G0018202.1 mouse_genomes_project 11 46860583 46885427 + Flt4 protein_coding processed_transcript MGP_AJ_T0028764.1 MGP_AJ_G0018202.1 mouse_genomes_project 11 46860583 46909608 + MGP_AJ_P0028764 Flt4 protein_coding protein_coding MGP_AJ_T0028095.1 MGP_AJ_G0018025.1 mouse_genomes_project 11 13651066 13787413 + MGP_AJ_P0028095 Egfr protein_coding protein_coding MGP_AJ_T0028096.1 MGP_AJ_G0018025.1 mouse_genomes_project 11 13651074 13817934 + MGP_AJ_P0028096 Egfr protein_coding protein_coding MGP_AJ_T0028097.1 MGP_AJ_G0018025.1 mouse_genomes_project 11 13651093 13692738 + Egfr protein_coding processed_transcript MGP_AJ_T0028098.1 MGP_AJ_G0018025.1 mouse_genomes_project 11 13777689 13783847 + MGP_AJ_P0028098 Egfr protein_coding protein_coding MGP_AJ_T0028099.1 MGP_AJ_G0018025.1 mouse_genomes_project 11 13804959 13810582 + Egfr protein_coding processed_transcript MGP_AJ_T0032080.1 MGP_AJ_G0019029.1 mouse_genomes_project 11 96793205 96797999 + MGP_AJ_P0032080 Grb7 protein_coding protein_coding MGP_AJ_T0032081.1 MGP_AJ_G0019029.1 mouse_genomes_project 11 96793645 96801955 + MGP_AJ_P0032081 Grb7 protein_coding protein_coding MGP_AJ_T0032082.1 MGP_AJ_G0019029.1 mouse_genomes_project 11 96793859 96801955 + Grb7 protein_coding retained_intron MGP_AJ_T0032083.1 MGP_AJ_G0019029.1 mouse_genomes_project 11 96793879 96801955 + Grb7 protein_coding retained_intron MGP_AJ_T0032084.1 MGP_AJ_G0019029.1 mouse_genomes_project 11 96798423 96800404 + Grb7 protein_coding retained_intron MGP_AJ_T0032085.1 MGP_AJ_G0019029.1 mouse_genomes_project 11 96800370 96801707 + Grb7 protein_coding retained_intron MGP_AJ_T0012650.1 MGP_AJ_G0010745.1 mouse_genomes_project 11 62797079 62797569 - processed_pseudogene processed_pseudogene MGP_AJ_T0003188.1 MGP_AJ_G0002954.1 mouse_genomes_project 11 58607510 58618667 - Map2k3os antisense antisense MGP_AJ_T0017286.1 MGP_AJ_G0015196.1 mouse_genomes_project 11 117363723 117366789 - Gm11748 processed_transcript processed_transcript MGP_AJ_T0012716.1 MGP_AJ_G0010811.1 mouse_genomes_project 11 86655171 86655701 - processed_pseudogene processed_pseudogene MGP_AJ_T0029250.1 MGP_AJ_G0018343.1 mouse_genomes_project 11 56275763 56279823 + MGP_AJ_P0029250 Olfr314 protein_coding protein_coding MGP_AJ_T0029251.1 MGP_AJ_G0018343.1 mouse_genomes_project 11 56278941 56280072 + MGP_AJ_P0029251 Olfr314 protein_coding protein_coding MGP_AJ_T0003280.1 MGP_AJ_G0003027.1 mouse_genomes_project 11 95594115 95596886 + Gm11592 antisense antisense MGP_AJ_T0029752.1 MGP_AJ_G0018463.1 mouse_genomes_project 11 65545774 65563130 + MGP_AJ_P0029752 Gsg1l2 protein_coding protein_coding MGP_AJ_T0029753.1 MGP_AJ_G0018463.1 mouse_genomes_project 11 65552103 65558579 + MGP_AJ_P0029753 Gsg1l2 protein_coding protein_coding MGP_AJ_T0029321.1 MGP_AJ_G0018371.1 mouse_genomes_project 11 57141350 57142469 - MGP_AJ_P0029321 Olfr222 protein_coding protein_coding MGP_AJ_T0031238.1 MGP_AJ_G0018821.1 mouse_genomes_project 11 81699908 81705229 - MGP_AJ_P0031238 Ccl6 protein_coding protein_coding MGP_AJ_T0031239.1 MGP_AJ_G0018821.1 mouse_genomes_project 11 81700421 81701921 - Ccl6 protein_coding retained_intron MGP_AJ_T0031240.1 MGP_AJ_G0018821.1 mouse_genomes_project 11 81701498 81705117 - Ccl6 protein_coding retained_intron MGP_AJ_T0033067.1 MGP_AJ_G0019282.1 mouse_genomes_project 11 105422056 105451716 + MGP_AJ_P0033067 Cep95 protein_coding protein_coding MGP_AJ_T0033068.1 MGP_AJ_G0019282.1 mouse_genomes_project 11 105422079 105451709 + MGP_AJ_P0033068 Cep95 protein_coding protein_coding MGP_AJ_T0033069.1 MGP_AJ_G0019282.1 mouse_genomes_project 11 105422091 105424073 + Cep95 protein_coding processed_transcript MGP_AJ_T0033070.1 MGP_AJ_G0019282.1 mouse_genomes_project 11 105445204 105446695 + Cep95 protein_coding processed_transcript MGP_AJ_T0033071.1 MGP_AJ_G0019282.1 mouse_genomes_project 11 105447078 105448634 + Cep95 protein_coding processed_transcript MGP_AJ_T0033072.1 MGP_AJ_G0019282.1 mouse_genomes_project 11 105450689 105451717 + Cep95 protein_coding processed_transcript MGP_AJ_T0033073.1 MGP_AJ_G0019282.1 mouse_genomes_project 11 105450734 105452786 + MGP_AJ_P0033073 Cep95 protein_coding protein_coding MGP_AJ_T0012796.1 MGP_AJ_G0010891.1 mouse_genomes_project 11 120806698 120807125 - processed_pseudogene processed_pseudogene MGP_AJ_T0029925.1 MGP_AJ_G0018498.1 mouse_genomes_project 11 67162691 67168044 + MGP_AJ_P0029925 Gm17305 protein_coding protein_coding MGP_AJ_T0032334.1 MGP_AJ_G0019130.1 mouse_genomes_project 11 99070612 99078167 + MGP_AJ_P0032334 Nkiras2 protein_coding protein_coding MGP_AJ_T0032335.1 MGP_AJ_G0019130.1 mouse_genomes_project 11 99071652 99077784 + MGP_AJ_P0032335 Nkiras2 protein_coding protein_coding MGP_AJ_T0032336.1 MGP_AJ_G0019130.1 mouse_genomes_project 11 99074243 99078975 + MGP_AJ_P0032336 Nkiras2 protein_coding protein_coding MGP_AJ_T0032337.1 MGP_AJ_G0019130.1 mouse_genomes_project 11 99074287 99076246 + Nkiras2 protein_coding processed_transcript MGP_AJ_T0032338.1 MGP_AJ_G0019130.1 mouse_genomes_project 11 99074315 99077954 + Nkiras2 protein_coding processed_transcript MGP_AJ_T0032339.1 MGP_AJ_G0019130.1 mouse_genomes_project 11 99074378 99077485 + MGP_AJ_P0032339 Nkiras2 protein_coding protein_coding MGP_AJ_T0030869.1 MGP_AJ_G0018723.1 mouse_genomes_project 11 75834053 75847375 - MGP_AJ_P0030869 Pipox protein_coding protein_coding MGP_AJ_T0030870.1 MGP_AJ_G0018723.1 mouse_genomes_project 11 75834498 75836125 - Pipox protein_coding retained_intron MGP_AJ_T0030871.1 MGP_AJ_G0018723.1 mouse_genomes_project 11 75836057 75837983 - Pipox protein_coding processed_transcript MGP_AJ_T0029860.1 MGP_AJ_G0018484.1 mouse_genomes_project 11 66850658 66852520 + MGP_AJ_P0029860 Borcs6 protein_coding protein_coding MGP_AJ_T0006234.1 MGP_AJ_G0005206.1 mouse_genomes_project 11 43769264 43770357 - lincRNA lincRNA MGP_AJ_T0028759.1 MGP_AJ_G0018198.1 mouse_genomes_project 11 46657453 46658389 + MGP_AJ_P0028759 Olfr1388 protein_coding protein_coding MGP_AJ_T0029915.1 MGP_AJ_G0018497.1 mouse_genomes_project 11 67141954 67147290 - Chd3 protein_coding retained_intron MGP_AJ_T0029916.1 MGP_AJ_G0018497.1 mouse_genomes_project 11 67141954 67144699 - Chd3 protein_coding retained_intron MGP_AJ_T0029917.1 MGP_AJ_G0018497.1 mouse_genomes_project 11 67141954 67168079 - MGP_AJ_P0029917 Chd3 protein_coding protein_coding MGP_AJ_T0029918.1 MGP_AJ_G0018497.1 mouse_genomes_project 11 67143029 67168044 - MGP_AJ_P0029918 Chd3 protein_coding protein_coding MGP_AJ_T0029919.1 MGP_AJ_G0018497.1 mouse_genomes_project 11 67143814 67163453 - MGP_AJ_P0029919 Chd3 protein_coding protein_coding MGP_AJ_T0029920.1 MGP_AJ_G0018497.1 mouse_genomes_project 11 67144815 67145814 - Chd3 protein_coding retained_intron MGP_AJ_T0029921.1 MGP_AJ_G0018497.1 mouse_genomes_project 11 67152588 67153186 - Chd3 protein_coding retained_intron MGP_AJ_T0029922.1 MGP_AJ_G0018497.1 mouse_genomes_project 11 67153181 67155304 - MGP_AJ_P0029922 Chd3 protein_coding protein_coding MGP_AJ_T0029923.1 MGP_AJ_G0018497.1 mouse_genomes_project 11 67159415 67160430 - MGP_AJ_P0029923 Chd3 protein_coding protein_coding MGP_AJ_T0029924.1 MGP_AJ_G0018497.1 mouse_genomes_project 11 67159432 67160430 - MGP_AJ_P0029924 Chd3 protein_coding protein_coding MGP_AJ_T0031082.1 MGP_AJ_G0018775.1 mouse_genomes_project 11 78207528 78224906 + MGP_AJ_P0031082 Rnf135 protein_coding protein_coding MGP_AJ_T0031083.1 MGP_AJ_G0018775.1 mouse_genomes_project 11 78207900 78212325 + Rnf135 protein_coding processed_transcript MGP_AJ_T0006293.1 MGP_AJ_G0005253.1 mouse_genomes_project 11 80674260 80677217 + Gm11426 lincRNA lincRNA MGP_AJ_T0009678.1 MGP_AJ_G0007800.1 mouse_genomes_project 11 47639982 47640077 - Mir804 miRNA miRNA MGP_AJ_T0034049.1 MGP_AJ_G0019483.1 mouse_genomes_project 11 119519587 119528016 - MGP_AJ_P0034049 Pcyt2 protein_coding protein_coding MGP_AJ_T0034050.1 MGP_AJ_G0019483.1 mouse_genomes_project 11 119520530 119528005 - MGP_AJ_P0034050 Pcyt2 protein_coding protein_coding MGP_AJ_T0034051.1 MGP_AJ_G0019483.1 mouse_genomes_project 11 119520751 119522189 - Pcyt2 protein_coding retained_intron MGP_AJ_T0034052.1 MGP_AJ_G0019483.1 mouse_genomes_project 11 119520955 119522161 - Pcyt2 protein_coding retained_intron MGP_AJ_T0034053.1 MGP_AJ_G0019483.1 mouse_genomes_project 11 119521707 119523154 - Pcyt2 protein_coding retained_intron MGP_AJ_T0034054.1 MGP_AJ_G0019483.1 mouse_genomes_project 11 119522284 119527988 - Pcyt2 protein_coding retained_intron MGP_AJ_T0034055.1 MGP_AJ_G0019483.1 mouse_genomes_project 11 119522675 119523775 - Pcyt2 protein_coding retained_intron MGP_AJ_T0034056.1 MGP_AJ_G0019483.1 mouse_genomes_project 11 119523014 119523669 - Pcyt2 protein_coding retained_intron MGP_AJ_T0034057.1 MGP_AJ_G0019483.1 mouse_genomes_project 11 119523056 119524605 - Pcyt2 protein_coding retained_intron MGP_AJ_T0034058.1 MGP_AJ_G0019483.1 mouse_genomes_project 11 119523109 119527993 - Pcyt2 protein_coding processed_transcript MGP_AJ_T0034059.1 MGP_AJ_G0019483.1 mouse_genomes_project 11 119525255 119527990 - Pcyt2 protein_coding retained_intron MGP_AJ_T0034060.1 MGP_AJ_G0019483.1 mouse_genomes_project 11 119525526 119527949 - Pcyt2 protein_coding retained_intron MGP_AJ_T0031951.1 MGP_AJ_G0018997.1 mouse_genomes_project 11 95645625 95665316 - MGP_AJ_P0031951 Gpr179 protein_coding protein_coding MGP_AJ_T0031952.1 MGP_AJ_G0018997.1 mouse_genomes_project 11 95662707 95665377 - Gpr179 protein_coding retained_intron MGP_AJ_T0032764.1 MGP_AJ_G0019213.1 mouse_genomes_project 11 101380841 101383033 + MGP_AJ_P0032764 Higd1b protein_coding protein_coding MGP_AJ_T0032765.1 MGP_AJ_G0019213.1 mouse_genomes_project 11 101381288 101383033 + MGP_AJ_P0032765 Higd1b protein_coding protein_coding MGP_AJ_T0032766.1 MGP_AJ_G0019213.1 mouse_genomes_project 11 101381438 101383033 + MGP_AJ_P0032766 Higd1b protein_coding protein_coding MGP_AJ_T0031504.1 MGP_AJ_G0018883.1 mouse_genomes_project 11 86089659 86091292 - MGP_AJ_P0031504 protein_coding protein_coding MGP_AJ_T0100590.1 MGP_AJ_G0038556.1 mouse_genomes_project 11 49076104 49076248 - Gm25291 snoRNA snoRNA MGP_AJ_T0032097.1 MGP_AJ_G0019033.1 mouse_genomes_project 11 96979747 96991862 + MGP_AJ_P0032097 Gsdma3 protein_coding protein_coding MGP_AJ_T0032098.1 MGP_AJ_G0019033.1 mouse_genomes_project 11 96979747 96991725 + MGP_AJ_P0032098 Gsdma3 protein_coding protein_coding MGP_AJ_T0009715.1 MGP_AJ_G0007837.1 mouse_genomes_project 11 73379170 73379265 + Mir22 miRNA miRNA MGP_AJ_T0029469.1 MGP_AJ_G0018402.1 mouse_genomes_project 11 58843625 58866896 - MGP_AJ_P0029469 Usp22 protein_coding protein_coding MGP_AJ_T0029470.1 MGP_AJ_G0018402.1 mouse_genomes_project 11 58845859 58849233 - Usp22 protein_coding retained_intron MGP_AJ_T0029471.1 MGP_AJ_G0018402.1 mouse_genomes_project 11 58847550 58851225 - Usp22 protein_coding retained_intron MGP_AJ_T0029472.1 MGP_AJ_G0018402.1 mouse_genomes_project 11 58853235 58860116 - MGP_AJ_P0029472 Usp22 protein_coding nonsense_mediated_decay MGP_AJ_T0029473.1 MGP_AJ_G0018402.1 mouse_genomes_project 11 58854612 58866870 - Usp22 protein_coding retained_intron MGP_AJ_T0032210.1 MGP_AJ_G0019067.1 mouse_genomes_project 11 97929775 97930075 - MGP_AJ_P0032210 Gm11939 protein_coding protein_coding MGP_AJ_T0029236.1 MGP_AJ_G0018333.1 mouse_genomes_project 11 56080050 56081172 + MGP_AJ_P0029236 Olfr324 protein_coding protein_coding MGP_AJ_T0012657.1 MGP_AJ_G0010752.1 mouse_genomes_project 11 67446578 67446760 - processed_pseudogene processed_pseudogene MGP_AJ_T0006220.1 MGP_AJ_G0005193.1 mouse_genomes_project 11 34796803 34811004 + Gm12128 lincRNA lincRNA MGP_AJ_T0012775.1 MGP_AJ_G0010870.1 mouse_genomes_project 11 112524677 112525182 + processed_pseudogene processed_pseudogene MGP_AJ_T0011298.1 MGP_AJ_G0009420.1 mouse_genomes_project 11 47794386 47794662 - Gm23824 misc_RNA misc_RNA MGP_AJ_T0034089.1 MGP_AJ_G0019489.1 mouse_genomes_project 11 119582906 119584281 + Aspscr1 protein_coding retained_intron MGP_AJ_T0034090.1 MGP_AJ_G0019489.1 mouse_genomes_project 11 119582959 119585917 + Aspscr1 protein_coding retained_intron MGP_AJ_T0034091.1 MGP_AJ_G0019489.1 mouse_genomes_project 11 119582996 119611569 + MGP_AJ_P0034091 Aspscr1 protein_coding nonsense_mediated_decay MGP_AJ_T0034092.1 MGP_AJ_G0019489.1 mouse_genomes_project 11 119583002 119619763 + MGP_AJ_P0034092 Aspscr1 protein_coding protein_coding MGP_AJ_T0034093.1 MGP_AJ_G0019489.1 mouse_genomes_project 11 119583016 119619385 + MGP_AJ_P0034093 Aspscr1 protein_coding protein_coding MGP_AJ_T0034094.1 MGP_AJ_G0019489.1 mouse_genomes_project 11 119583031 119599003 + MGP_AJ_P0034094 Aspscr1 protein_coding nonsense_mediated_decay MGP_AJ_T0034095.1 MGP_AJ_G0019489.1 mouse_genomes_project 11 119583292 119599106 + MGP_AJ_P0034095 Aspscr1 protein_coding protein_coding MGP_AJ_T0034096.1 MGP_AJ_G0019489.1 mouse_genomes_project 11 119583307 119599102 + MGP_AJ_P0034096 Aspscr1 protein_coding protein_coding MGP_AJ_T0034097.1 MGP_AJ_G0019489.1 mouse_genomes_project 11 119583307 119588388 + MGP_AJ_P0034097 Aspscr1 protein_coding protein_coding MGP_AJ_T0034098.1 MGP_AJ_G0019489.1 mouse_genomes_project 11 119583325 119599062 + MGP_AJ_P0034098 Aspscr1 protein_coding protein_coding MGP_AJ_T0034099.1 MGP_AJ_G0019489.1 mouse_genomes_project 11 119583337 119596636 + MGP_AJ_P0034099 Aspscr1 protein_coding protein_coding MGP_AJ_T0034100.1 MGP_AJ_G0019489.1 mouse_genomes_project 11 119586595 119619755 + MGP_AJ_P0034100 Aspscr1 protein_coding protein_coding MGP_AJ_T0034101.1 MGP_AJ_G0019489.1 mouse_genomes_project 11 119587160 119588380 + MGP_AJ_P0034101 Aspscr1 protein_coding protein_coding MGP_AJ_T0034102.1 MGP_AJ_G0019489.1 mouse_genomes_project 11 119587273 119599232 + MGP_AJ_P0034102 Aspscr1 protein_coding protein_coding MGP_AJ_T0034103.1 MGP_AJ_G0019489.1 mouse_genomes_project 11 119596627 119619756 + MGP_AJ_P0034103 Aspscr1 protein_coding protein_coding MGP_AJ_T0034104.1 MGP_AJ_G0019489.1 mouse_genomes_project 11 119599208 119619756 + MGP_AJ_P0034104 Aspscr1 protein_coding nonsense_mediated_decay MGP_AJ_T0034105.1 MGP_AJ_G0019489.1 mouse_genomes_project 11 119599244 119619554 + MGP_AJ_P0034105 Aspscr1 protein_coding protein_coding MGP_AJ_T0034106.1 MGP_AJ_G0019489.1 mouse_genomes_project 11 119612518 119619757 + MGP_AJ_P0034106 Aspscr1 protein_coding nonsense_mediated_decay MGP_AJ_T0034107.1 MGP_AJ_G0019489.1 mouse_genomes_project 11 119618970 119619755 + Aspscr1 protein_coding retained_intron MGP_AJ_T0034108.1 MGP_AJ_G0019489.1 mouse_genomes_project 11 119619072 119619760 + Aspscr1 protein_coding retained_intron MGP_AJ_T0034109.1 MGP_AJ_G0019489.1 mouse_genomes_project 11 119619170 119619758 + Aspscr1 protein_coding retained_intron MGP_AJ_T0029453.1 MGP_AJ_G0018399.1 mouse_genomes_project 11 58618832 58639531 + MGP_AJ_P0029453 Map2k3 protein_coding protein_coding MGP_AJ_T0029454.1 MGP_AJ_G0018399.1 mouse_genomes_project 11 58618853 58634338 + Map2k3 protein_coding retained_intron MGP_AJ_T0029455.1 MGP_AJ_G0018399.1 mouse_genomes_project 11 58618853 58628870 + Map2k3 protein_coding retained_intron MGP_AJ_T0029456.1 MGP_AJ_G0018399.1 mouse_genomes_project 11 58618865 58639514 + MGP_AJ_P0029456 Map2k3 protein_coding nonsense_mediated_decay MGP_AJ_T0029457.1 MGP_AJ_G0018399.1 mouse_genomes_project 11 58628633 58633518 + Map2k3 protein_coding processed_transcript MGP_AJ_T0029458.1 MGP_AJ_G0018399.1 mouse_genomes_project 11 58637379 58638539 + Map2k3 protein_coding retained_intron MGP_AJ_T0032356.1 MGP_AJ_G0019135.1 mouse_genomes_project 11 99165668 99189269 - MGP_AJ_P0032356 Rab5c protein_coding protein_coding MGP_AJ_T0032357.1 MGP_AJ_G0019135.1 mouse_genomes_project 11 99165670 99189269 - MGP_AJ_P0032357 Rab5c protein_coding protein_coding MGP_AJ_T0032358.1 MGP_AJ_G0019135.1 mouse_genomes_project 11 99169159 99181265 - MGP_AJ_P0032358 Rab5c protein_coding protein_coding MGP_AJ_T0032359.1 MGP_AJ_G0019135.1 mouse_genomes_project 11 99170638 99189230 - MGP_AJ_P0032359 Rab5c protein_coding protein_coding MGP_AJ_T0028502.1 MGP_AJ_G0018125.1 mouse_genomes_project 11 31423095 31532838 + MGP_AJ_P0028502 Fam196b protein_coding protein_coding MGP_AJ_T0028503.1 MGP_AJ_G0018125.1 mouse_genomes_project 11 31423095 31532837 + MGP_AJ_P0028503 Fam196b protein_coding protein_coding MGP_AJ_T0030522.1 MGP_AJ_G0018635.1 mouse_genomes_project 11 71444767 71445706 - MGP_AJ_P0030522 Olfr382 protein_coding protein_coding MGP_AJ_T0003325.1 MGP_AJ_G0003065.1 mouse_genomes_project 11 106056022 106059185 + Gm11713 antisense antisense MGP_AJ_T0100598.1 MGP_AJ_G0038564.1 mouse_genomes_project 11 60337332 60337404 + Snord65 snoRNA snoRNA MGP_AJ_T0003189.1 MGP_AJ_G0002955.1 mouse_genomes_project 11 59198953 59199627 - B9d1os antisense antisense MGP_AJ_T0031429.1 MGP_AJ_G0018868.1 mouse_genomes_project 11 85297771 85392353 + MGP_AJ_P0031429 Trim37 protein_coding protein_coding MGP_AJ_T0031430.1 MGP_AJ_G0018868.1 mouse_genomes_project 11 85297999 85320590 + MGP_AJ_P0031430 Trim37 protein_coding protein_coding MGP_AJ_T0031431.1 MGP_AJ_G0018868.1 mouse_genomes_project 11 85357570 85380315 + Trim37 protein_coding retained_intron MGP_AJ_T0031432.1 MGP_AJ_G0018868.1 mouse_genomes_project 11 85361127 85389928 + MGP_AJ_P0031432 Trim37 protein_coding protein_coding MGP_AJ_T0032595.1 MGP_AJ_G0019186.1 mouse_genomes_project 11 100552171 100566368 + MGP_AJ_P0032595 Cd300lg protein_coding protein_coding MGP_AJ_T0032596.1 MGP_AJ_G0019186.1 mouse_genomes_project 11 100552171 100566368 + MGP_AJ_P0032596 Cd300lg protein_coding protein_coding MGP_AJ_T0032597.1 MGP_AJ_G0019186.1 mouse_genomes_project 11 100552171 100561195 + MGP_AJ_P0032597 Cd300lg protein_coding protein_coding MGP_AJ_T0032598.1 MGP_AJ_G0019186.1 mouse_genomes_project 11 100552171 100566368 + MGP_AJ_P0032598 Cd300lg protein_coding protein_coding MGP_AJ_T0033873.1 MGP_AJ_G0019447.1 mouse_genomes_project 11 118210091 118245358 + MGP_AJ_P0033873 Card14 protein_coding protein_coding MGP_AJ_T0033874.1 MGP_AJ_G0019447.1 mouse_genomes_project 11 118216895 118245358 + MGP_AJ_P0033874 Card14 protein_coding protein_coding MGP_AJ_T0033875.1 MGP_AJ_G0019447.1 mouse_genomes_project 11 118221686 118245170 + Card14 protein_coding processed_transcript MGP_AJ_T0033876.1 MGP_AJ_G0019447.1 mouse_genomes_project 11 118223980 118245357 + Card14 protein_coding processed_transcript MGP_AJ_T0003205.1 MGP_AJ_G0002969.1 mouse_genomes_project 11 61768147 61770757 + Gm12289 antisense antisense MGP_AJ_T0030570.1 MGP_AJ_G0018661.1 mouse_genomes_project 11 72531447 72556009 + MGP_AJ_P0030570 Ccdc92b protein_coding protein_coding MGP_AJ_T0031818.1 MGP_AJ_G0018963.1 mouse_genomes_project 11 94313670 94327255 + MGP_AJ_P0031818 Snf8 protein_coding protein_coding MGP_AJ_T0031819.1 MGP_AJ_G0018963.1 mouse_genomes_project 11 94313741 94322712 + Snf8 protein_coding processed_transcript MGP_AJ_T0031820.1 MGP_AJ_G0018963.1 mouse_genomes_project 11 94313750 94327255 + MGP_AJ_P0031820 Snf8 protein_coding protein_coding MGP_AJ_T0031821.1 MGP_AJ_G0018963.1 mouse_genomes_project 11 94324509 94327255 + Snf8 protein_coding processed_transcript MGP_AJ_T0031822.1 MGP_AJ_G0018963.1 mouse_genomes_project 11 94324643 94327136 + Snf8 protein_coding processed_transcript MGP_AJ_T0003304.1 MGP_AJ_G0003046.1 mouse_genomes_project 11 100657867 100658565 - Gm11586 antisense antisense MGP_AJ_T0027710.1 MGP_AJ_G0017938.1 mouse_genomes_project 11 828355 832496 + MGP_AJ_P0027710 Dusp18 protein_coding protein_coding MGP_AJ_T0027711.1 MGP_AJ_G0017938.1 mouse_genomes_project 11 828355 834443 + MGP_AJ_P0027711 Dusp18 protein_coding protein_coding MGP_AJ_T0031259.1 MGP_AJ_G0018831.1 mouse_genomes_project 11 82115510 82196107 + MGP_AJ_P0031259 Synrg protein_coding protein_coding MGP_AJ_T0031260.1 MGP_AJ_G0018831.1 mouse_genomes_project 11 82115510 82192370 + MGP_AJ_P0031260 Synrg protein_coding protein_coding MGP_AJ_T0031261.1 MGP_AJ_G0018831.1 mouse_genomes_project 11 82115558 82192344 + MGP_AJ_P0031261 Synrg protein_coding protein_coding MGP_AJ_T0031262.1 MGP_AJ_G0018831.1 mouse_genomes_project 11 82115558 82192344 + MGP_AJ_P0031262 Synrg protein_coding protein_coding MGP_AJ_T0031263.1 MGP_AJ_G0018831.1 mouse_genomes_project 11 82132951 82141302 + Synrg protein_coding processed_transcript MGP_AJ_T0031264.1 MGP_AJ_G0018831.1 mouse_genomes_project 11 82133792 82142362 + MGP_AJ_P0031264 Synrg protein_coding protein_coding MGP_AJ_T0031265.1 MGP_AJ_G0018831.1 mouse_genomes_project 11 82141301 82142778 + Synrg protein_coding retained_intron MGP_AJ_T0031266.1 MGP_AJ_G0018831.1 mouse_genomes_project 11 82170744 82192827 + Synrg protein_coding retained_intron MGP_AJ_T0031267.1 MGP_AJ_G0018831.1 mouse_genomes_project 11 82178076 82191426 + Synrg protein_coding retained_intron MGP_AJ_T0006221.1 MGP_AJ_G0005194.1 mouse_genomes_project 11 35625290 35652734 - Gm12130 lincRNA lincRNA MGP_AJ_T0030443.1 MGP_AJ_G0018611.1 mouse_genomes_project 11 70508390 70588262 + MGP_AJ_P0030443 Ube2g1 protein_coding protein_coding MGP_AJ_T0030444.1 MGP_AJ_G0018611.1 mouse_genomes_project 11 70508390 70588262 + MGP_AJ_P0030444 Ube2g1 protein_coding protein_coding MGP_AJ_T0030445.1 MGP_AJ_G0018611.1 mouse_genomes_project 11 70508426 70581921 + Ube2g1 protein_coding retained_intron MGP_AJ_T0028686.1 MGP_AJ_G0018175.1 mouse_genomes_project 11 45924292 45928895 + Rack1 protein_coding retained_intron MGP_AJ_T0028687.1 MGP_AJ_G0018175.1 mouse_genomes_project 11 45924317 45930009 + Rack1 protein_coding processed_transcript MGP_AJ_T0028688.1 MGP_AJ_G0018175.1 mouse_genomes_project 11 45924320 45930355 + MGP_AJ_P0028688 Rack1 protein_coding protein_coding MGP_AJ_T0028689.1 MGP_AJ_G0018175.1 mouse_genomes_project 11 45924334 45926628 + Rack1 protein_coding retained_intron MGP_AJ_T0028690.1 MGP_AJ_G0018175.1 mouse_genomes_project 11 45927112 45929994 + Rack1 protein_coding processed_transcript MGP_AJ_T0028691.1 MGP_AJ_G0018175.1 mouse_genomes_project 11 45929368 45930014 + Rack1 protein_coding processed_transcript MGP_AJ_T0028188.1 MGP_AJ_G0018050.1 mouse_genomes_project 11 19432176 19439323 + MGP_AJ_P0028188 Tmem17 protein_coding protein_coding MGP_AJ_T0029669.1 MGP_AJ_G0018442.1 mouse_genomes_project 11 62737053 62759427 + MGP_AJ_P0029669 Elac2 protein_coding protein_coding MGP_AJ_T0029670.1 MGP_AJ_G0018442.1 mouse_genomes_project 11 62737086 62758686 + MGP_AJ_P0029670 Elac2 protein_coding protein_coding MGP_AJ_T0029671.1 MGP_AJ_G0018442.1 mouse_genomes_project 11 62737087 62738667 + Elac2 protein_coding processed_transcript MGP_AJ_T0029672.1 MGP_AJ_G0018442.1 mouse_genomes_project 11 62737089 62758958 + MGP_AJ_P0029672 Elac2 protein_coding protein_coding MGP_AJ_T0029673.1 MGP_AJ_G0018442.1 mouse_genomes_project 11 62737106 62759425 + Elac2 protein_coding processed_transcript MGP_AJ_T0029674.1 MGP_AJ_G0018442.1 mouse_genomes_project 11 62743480 62750514 + MGP_AJ_P0029674 Elac2 protein_coding protein_coding MGP_AJ_T0029675.1 MGP_AJ_G0018442.1 mouse_genomes_project 11 62757693 62759246 + Elac2 protein_coding processed_transcript MGP_AJ_T0030936.1 MGP_AJ_G0018736.1 mouse_genomes_project 11 76167098 76207735 - MGP_AJ_P0030936 Supt6 protein_coding protein_coding MGP_AJ_T0030937.1 MGP_AJ_G0018736.1 mouse_genomes_project 11 76167380 76184643 - Supt6 protein_coding retained_intron MGP_AJ_T0098899.1 MGP_AJ_G0036882.1 mouse_genomes_project 11 68721140 68729246 + Gm19967 sense_intronic sense_intronic MGP_AJ_T0031298.1 MGP_AJ_G0018839.1 mouse_genomes_project 11 82979336 82987434 - MGP_AJ_P0031298 Dhrs11 protein_coding protein_coding MGP_AJ_T0031299.1 MGP_AJ_G0018839.1 mouse_genomes_project 11 82980472 82987464 - MGP_AJ_P0031299 Dhrs11 protein_coding nonsense_mediated_decay MGP_AJ_T0003266.1 MGP_AJ_G0003016.1 mouse_genomes_project 11 93599527 93600923 - Gm11521 antisense antisense MGP_AJ_T0033274.1 MGP_AJ_G0019326.1 mouse_genomes_project 11 113448429 113498847 + MGP_AJ_P0033274 Ttyh2 protein_coding protein_coding MGP_AJ_T0033275.1 MGP_AJ_G0019326.1 mouse_genomes_project 11 113448514 113468697 + Ttyh2 protein_coding processed_transcript MGP_AJ_T0030279.1 MGP_AJ_G0018577.1 mouse_genomes_project 11 68506429 68509218 - MGP_AJ_P0030279 Pfn1 protein_coding protein_coding MGP_AJ_T0030280.1 MGP_AJ_G0018577.1 mouse_genomes_project 11 68506512 68509195 - MGP_AJ_P0030280 Pfn1 protein_coding nonsense_mediated_decay MGP_AJ_T0030281.1 MGP_AJ_G0018577.1 mouse_genomes_project 11 68507185 68509182 - Pfn1 protein_coding retained_intron MGP_AJ_T0030282.1 MGP_AJ_G0018577.1 mouse_genomes_project 11 68507195 68509172 - MGP_AJ_P0030282 Pfn1 protein_coding protein_coding MGP_AJ_T0012749.1 MGP_AJ_G0010844.1 mouse_genomes_project 11 101020499 101020670 - processed_pseudogene processed_pseudogene MGP_AJ_T0003359.1 MGP_AJ_G0003094.1 mouse_genomes_project 11 119435122 119438814 - Gm11789 antisense antisense MGP_AJ_T0003360.1 MGP_AJ_G0003094.1 mouse_genomes_project 11 119435148 119439748 - Gm11789 antisense antisense MGP_AJ_T0003361.1 MGP_AJ_G0003094.1 mouse_genomes_project 11 119435174 119440044 - Gm11789 antisense antisense MGP_AJ_T0003362.1 MGP_AJ_G0003094.1 mouse_genomes_project 11 119436523 119439773 - Gm11789 antisense antisense MGP_AJ_T0003363.1 MGP_AJ_G0003094.1 mouse_genomes_project 11 119438468 119439757 - Gm11789 antisense antisense MGP_AJ_T0102229.1 MGP_AJ_G0039972.1 mouse_genomes_project 11 46224228 46274752 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0031842.1 MGP_AJ_G0018975.1 mouse_genomes_project 11 94607889 94632422 + MGP_AJ_P0031842 Hoxb3 protein_coding protein_coding MGP_AJ_T0031843.1 MGP_AJ_G0018975.1 mouse_genomes_project 11 94612623 94628796 + MGP_AJ_P0031843 Hoxb3 protein_coding protein_coding MGP_AJ_T0031844.1 MGP_AJ_G0018975.1 mouse_genomes_project 11 94625506 94626290 + Hoxb3 protein_coding processed_transcript MGP_AJ_T0031845.1 MGP_AJ_G0018975.1 mouse_genomes_project 11 94628263 94631003 + MGP_AJ_P0031845 Hoxb3 protein_coding protein_coding MGP_AJ_T0003281.1 MGP_AJ_G0003028.1 mouse_genomes_project 11 95884221 95893699 + antisense antisense MGP_AJ_T0012462.1 MGP_AJ_G0010557.1 mouse_genomes_project 11 1174839 1175348 - processed_pseudogene processed_pseudogene MGP_AJ_T0012539.1 MGP_AJ_G0010634.1 mouse_genomes_project 11 24458373 24459094 + processed_pseudogene processed_pseudogene MGP_AJ_T0029416.1 MGP_AJ_G0018389.1 mouse_genomes_project 11 58126272 58144481 + Alkbh5 protein_coding processed_transcript MGP_AJ_T0029417.1 MGP_AJ_G0018389.1 mouse_genomes_project 11 58127870 58148582 + MGP_AJ_P0029417 Alkbh5 protein_coding protein_coding MGP_AJ_T0017220.1 MGP_AJ_G0015164.1 mouse_genomes_project 11 81399964 81402877 + AA465934 processed_transcript antisense MGP_AJ_T0017221.1 MGP_AJ_G0015164.1 mouse_genomes_project 11 81399985 81402878 + AA465934 processed_transcript antisense MGP_AJ_T0017222.1 MGP_AJ_G0015164.1 mouse_genomes_project 11 81399993 81400544 + AA465934 processed_transcript retained_intron MGP_AJ_T0017223.1 MGP_AJ_G0015164.1 mouse_genomes_project 11 81400007 81402875 + AA465934 processed_transcript antisense MGP_AJ_T0017224.1 MGP_AJ_G0015164.1 mouse_genomes_project 11 81400008 81402876 + AA465934 processed_transcript retained_intron MGP_AJ_T0006358.1 MGP_AJ_G0005298.1 mouse_genomes_project 11 112987497 113007522 - Gm11690 lincRNA lincRNA MGP_AJ_T0032444.1 MGP_AJ_G0019156.1 mouse_genomes_project 11 99712119 99714342 + MGP_AJ_P0032444 Ramp2 protein_coding protein_coding MGP_AJ_T0032445.1 MGP_AJ_G0019156.1 mouse_genomes_project 11 99712403 99713776 + Ramp2 protein_coding retained_intron MGP_AJ_T0032446.1 MGP_AJ_G0019156.1 mouse_genomes_project 11 99712482 99726626 + MGP_AJ_P0032446 Ramp2 protein_coding nonsense_mediated_decay MGP_AJ_T0032447.1 MGP_AJ_G0019156.1 mouse_genomes_project 11 99712520 99714342 + MGP_AJ_P0032447 Ramp2 protein_coding protein_coding MGP_AJ_T0032448.1 MGP_AJ_G0019156.1 mouse_genomes_project 11 99712523 99714342 + MGP_AJ_P0032448 Ramp2 protein_coding nonsense_mediated_decay MGP_AJ_T0032449.1 MGP_AJ_G0019156.1 mouse_genomes_project 11 99712658 99713728 + MGP_AJ_P0032449 Ramp2 protein_coding protein_coding MGP_AJ_T0032450.1 MGP_AJ_G0019156.1 mouse_genomes_project 11 99713024 99714342 + Ramp2 protein_coding retained_intron MGP_AJ_T0032451.1 MGP_AJ_G0019156.1 mouse_genomes_project 11 99713184 99714156 + MGP_AJ_P0032451 Ramp2 protein_coding protein_coding MGP_AJ_T0032859.1 MGP_AJ_G0019234.1 mouse_genomes_project 11 102209371 102210382 + MGP_AJ_P0032859 Rprml protein_coding protein_coding MGP_AJ_T0101949.1 MGP_AJ_G0039792.1 mouse_genomes_project 11 72169793 72181653 - transcribed_unprocessed_pseudogene processed_transcript MGP_AJ_T0101950.1 MGP_AJ_G0039792.1 mouse_genomes_project 11 72170268 72171204 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_AJ_T0027885.1 MGP_AJ_G0017977.1 mouse_genomes_project 11 2668156 2671863 - MGP_AJ_P0027885 Mrps24 protein_coding protein_coding MGP_AJ_T0027886.1 MGP_AJ_G0017977.1 mouse_genomes_project 11 2668502 2671843 - Mrps24 protein_coding retained_intron MGP_AJ_T0027887.1 MGP_AJ_G0017977.1 mouse_genomes_project 11 2668699 2679851 - Mrps24 protein_coding processed_transcript MGP_AJ_T0027888.1 MGP_AJ_G0017977.1 mouse_genomes_project 11 2668731 2671866 - Mrps24 protein_coding retained_intron MGP_AJ_T0027889.1 MGP_AJ_G0017977.1 mouse_genomes_project 11 2668836 2671818 - Mrps24 protein_coding retained_intron MGP_AJ_T0003288.1 MGP_AJ_G0003033.1 mouse_genomes_project 11 97755216 97755774 + Gm11940 antisense antisense MGP_AJ_T0012654.1 MGP_AJ_G0010749.1 mouse_genomes_project 11 65867098 65867483 - processed_pseudogene processed_pseudogene MGP_AJ_T0009776.1 MGP_AJ_G0007898.1 mouse_genomes_project 11 119251281 119251335 - Mir6935 miRNA miRNA MGP_AJ_T0006280.1 MGP_AJ_G0005244.1 mouse_genomes_project 11 73667347 73683969 - Gm26836 lincRNA lincRNA MGP_AJ_T0099368.1 MGP_AJ_G0037334.1 mouse_genomes_project 11 96820184 96820318 - Gm25106 snRNA snRNA MGP_AJ_T0012768.1 MGP_AJ_G0010863.1 mouse_genomes_project 11 107373924 107374348 + processed_pseudogene processed_pseudogene MGP_AJ_T0029252.1 MGP_AJ_G0018344.1 mouse_genomes_project 11 56286092 56295414 - MGP_AJ_P0029252 Fam183b protein_coding protein_coding MGP_AJ_T0029253.1 MGP_AJ_G0018344.1 mouse_genomes_project 11 56286106 56295414 - MGP_AJ_P0029253 Fam183b protein_coding protein_coding MGP_AJ_T0033474.1 MGP_AJ_G0019369.1 mouse_genomes_project 11 114623057 114637591 - MGP_AJ_P0033474 Caskin2 protein_coding protein_coding MGP_AJ_T0033475.1 MGP_AJ_G0019369.1 mouse_genomes_project 11 114623874 114624756 - Caskin2 protein_coding processed_transcript MGP_AJ_T0033476.1 MGP_AJ_G0019369.1 mouse_genomes_project 11 114628672 114632070 - MGP_AJ_P0033476 Caskin2 protein_coding protein_coding MGP_AJ_T0033477.1 MGP_AJ_G0019369.1 mouse_genomes_project 11 114630744 114637600 - MGP_AJ_P0033477 Caskin2 protein_coding protein_coding MGP_AJ_T0009700.1 MGP_AJ_G0007822.1 mouse_genomes_project 11 67702864 67702927 - Mir6924 miRNA miRNA MGP_AJ_T0033912.1 MGP_AJ_G0019454.1 mouse_genomes_project 11 118815570 118817835 + MGP_AJ_P0033912 Chmp6 protein_coding protein_coding MGP_AJ_T0033913.1 MGP_AJ_G0019454.1 mouse_genomes_project 11 118815615 118821279 + MGP_AJ_P0033913 Chmp6 protein_coding protein_coding MGP_AJ_T0033914.1 MGP_AJ_G0019454.1 mouse_genomes_project 11 118817562 118820789 + Chmp6 protein_coding retained_intron MGP_AJ_T0033915.1 MGP_AJ_G0019454.1 mouse_genomes_project 11 118818471 118820369 + Chmp6 protein_coding retained_intron MGP_AJ_T0012777.1 MGP_AJ_G0010872.1 mouse_genomes_project 11 113436593 113436895 + processed_pseudogene processed_pseudogene MGP_AJ_T0012678.1 MGP_AJ_G0010773.1 mouse_genomes_project 11 72982068 72982461 - processed_pseudogene processed_pseudogene MGP_AJ_T0006320.1 MGP_AJ_G0005270.1 mouse_genomes_project 11 93483788 93486131 - Gm11515 lincRNA lincRNA MGP_AJ_T0098905.1 MGP_AJ_G0036887.1 mouse_genomes_project 11 107033040 107034102 + Gm11656 sense_intronic sense_intronic MGP_AJ_T0098906.1 MGP_AJ_G0036887.1 mouse_genomes_project 11 107033056 107037213 + Gm11656 sense_intronic sense_intronic MGP_AJ_T0033636.1 MGP_AJ_G0019398.1 mouse_genomes_project 11 115382785 115388516 + MGP_AJ_P0033636 Sphk1 protein_coding protein_coding MGP_AJ_T0033637.1 MGP_AJ_G0019398.1 mouse_genomes_project 11 115382981 115387559 + MGP_AJ_P0033637 Sphk1 protein_coding protein_coding MGP_AJ_T0033638.1 MGP_AJ_G0019398.1 mouse_genomes_project 11 115383022 115387143 + Sphk1 protein_coding retained_intron MGP_AJ_T0033639.1 MGP_AJ_G0019398.1 mouse_genomes_project 11 115383602 115388516 + MGP_AJ_P0033639 Sphk1 protein_coding protein_coding MGP_AJ_T0033640.1 MGP_AJ_G0019398.1 mouse_genomes_project 11 115383769 115388529 + MGP_AJ_P0033640 Sphk1 protein_coding protein_coding MGP_AJ_T0033641.1 MGP_AJ_G0019398.1 mouse_genomes_project 11 115384302 115388533 + MGP_AJ_P0033641 Sphk1 protein_coding protein_coding MGP_AJ_T0033642.1 MGP_AJ_G0019398.1 mouse_genomes_project 11 115384309 115388527 + Sphk1 protein_coding retained_intron MGP_AJ_T0033643.1 MGP_AJ_G0019398.1 mouse_genomes_project 11 115384312 115387571 + MGP_AJ_P0033643 Sphk1 protein_coding protein_coding MGP_AJ_T0033644.1 MGP_AJ_G0019398.1 mouse_genomes_project 11 115384315 115387200 + MGP_AJ_P0033644 Sphk1 protein_coding protein_coding MGP_AJ_T0033645.1 MGP_AJ_G0019398.1 mouse_genomes_project 11 115384331 115388533 + MGP_AJ_P0033645 Sphk1 protein_coding protein_coding MGP_AJ_T0033646.1 MGP_AJ_G0019398.1 mouse_genomes_project 11 115384783 115388516 + MGP_AJ_P0033646 Sphk1 protein_coding protein_coding MGP_AJ_T0033647.1 MGP_AJ_G0019398.1 mouse_genomes_project 11 115385109 115387495 + Sphk1 protein_coding processed_transcript MGP_AJ_T0033648.1 MGP_AJ_G0019398.1 mouse_genomes_project 11 115385126 115387854 + MGP_AJ_P0033648 Sphk1 protein_coding protein_coding MGP_AJ_T0033649.1 MGP_AJ_G0019398.1 mouse_genomes_project 11 115385433 115387557 + MGP_AJ_P0033649 Sphk1 protein_coding protein_coding MGP_AJ_T0033650.1 MGP_AJ_G0019398.1 mouse_genomes_project 11 115386018 115387147 + Sphk1 protein_coding retained_intron MGP_AJ_T0033651.1 MGP_AJ_G0019398.1 mouse_genomes_project 11 115386598 115388529 + MGP_AJ_P0033651 Sphk1 protein_coding protein_coding MGP_AJ_T0003355.1 MGP_AJ_G0003090.1 mouse_genomes_project 11 118837686 118844582 - Gm11767 antisense antisense MGP_AJ_T0003143.1 MGP_AJ_G0002915.1 mouse_genomes_project 11 40344129 40407126 - Gm12146 antisense antisense MGP_AJ_T0017145.1 MGP_AJ_G0015123.1 mouse_genomes_project 11 451825 452495 + Gm11947 processed_transcript processed_transcript MGP_AJ_T0006380.1 MGP_AJ_G0005316.1 mouse_genomes_project 11 119394678 119396922 - Gm16755 lincRNA lincRNA MGP_AJ_T0003183.1 MGP_AJ_G0002951.1 mouse_genomes_project 11 57386638 57395158 + Gm16062 antisense antisense MGP_AJ_T0012516.1 MGP_AJ_G0010611.1 mouse_genomes_project 11 18132407 18132944 - processed_pseudogene processed_pseudogene MGP_AJ_T0029298.1 MGP_AJ_G0018363.1 mouse_genomes_project 11 56811511 56854816 - MGP_AJ_P0029298 Wnt3a protein_coding protein_coding MGP_AJ_T0030629.1 MGP_AJ_G0018674.1 mouse_genomes_project 11 73213940 73264040 - MGP_AJ_P0030629 Rpa1 protein_coding protein_coding MGP_AJ_T0030630.1 MGP_AJ_G0018674.1 mouse_genomes_project 11 73216124 73264026 - MGP_AJ_P0030630 Rpa1 protein_coding protein_coding MGP_AJ_T0030631.1 MGP_AJ_G0018674.1 mouse_genomes_project 11 73217079 73257874 - Rpa1 protein_coding processed_transcript MGP_AJ_T0030632.1 MGP_AJ_G0018674.1 mouse_genomes_project 11 73231814 73264011 - Rpa1 protein_coding retained_intron MGP_AJ_T0030633.1 MGP_AJ_G0018674.1 mouse_genomes_project 11 73257663 73264009 - Rpa1 protein_coding processed_transcript MGP_AJ_T0017143.1 MGP_AJ_G0015122.1 mouse_genomes_project 11 447744 454022 + Gm11946 processed_transcript processed_transcript MGP_AJ_T0017144.1 MGP_AJ_G0015122.1 mouse_genomes_project 11 448535 454444 + Gm11946 processed_transcript processed_transcript MGP_AJ_T0009753.1 MGP_AJ_G0007875.1 mouse_genomes_project 11 101193990 101194099 - Gm22920 miRNA miRNA MGP_AJ_T0099335.1 MGP_AJ_G0037301.1 mouse_genomes_project 11 66695878 66695981 + Gm22608 snRNA snRNA MGP_AJ_T0006349.1 MGP_AJ_G0005293.1 mouse_genomes_project 11 111544457 111550734 - Gm11681 lincRNA lincRNA MGP_AJ_T0033354.1 MGP_AJ_G0019349.1 mouse_genomes_project 11 114118362 114125313 - MGP_AJ_P0033354 Ush1g protein_coding protein_coding MGP_AJ_T0003122.1 MGP_AJ_G0002899.1 mouse_genomes_project 11 9279598 9302803 + Gm12002 antisense antisense MGP_AJ_T0003123.1 MGP_AJ_G0002899.1 mouse_genomes_project 11 9279617 9301501 + Gm12002 antisense antisense MGP_AJ_T0003124.1 MGP_AJ_G0002899.1 mouse_genomes_project 11 9287545 9316746 + Gm12002 antisense antisense MGP_AJ_T0031221.1 MGP_AJ_G0018815.1 mouse_genomes_project 11 81547797 81551298 + MGP_AJ_P0031221 1700020L24Rik protein_coding protein_coding MGP_AJ_T0031222.1 MGP_AJ_G0018815.1 mouse_genomes_project 11 81550351 81550893 + MGP_AJ_P0031222 1700020L24Rik protein_coding protein_coding MGP_AJ_T0012521.1 MGP_AJ_G0010616.1 mouse_genomes_project 11 18418190 18418763 + processed_pseudogene processed_pseudogene MGP_AJ_T0100579.1 MGP_AJ_G0038545.1 mouse_genomes_project 11 22612184 22612314 + Gm23514 snoRNA snoRNA MGP_AJ_T0028595.1 MGP_AJ_G0018148.1 mouse_genomes_project 11 40758618 40764940 - MGP_AJ_P0028595 Fabp6 protein_coding protein_coding MGP_AJ_T0030514.1 MGP_AJ_G0018630.1 mouse_genomes_project 11 71262453 71266456 + MGP_AJ_P0030514 Olfr20 protein_coding protein_coding MGP_AJ_T0030515.1 MGP_AJ_G0018630.1 mouse_genomes_project 11 71265347 71266408 + MGP_AJ_P0030515 Olfr20 protein_coding protein_coding MGP_AJ_T0029093.1 MGP_AJ_G0018284.1 mouse_genomes_project 11 51835223 51888400 + Meikin protein_coding retained_intron MGP_AJ_T0029094.1 MGP_AJ_G0018284.1 mouse_genomes_project 11 51835223 51888435 + MGP_AJ_P0029094 Meikin protein_coding protein_coding MGP_AJ_T0012721.1 MGP_AJ_G0010816.1 mouse_genomes_project 11 90991752 90992552 - processed_pseudogene processed_pseudogene MGP_AJ_T0031254.1 MGP_AJ_G0018829.1 mouse_genomes_project 11 81999158 82056227 + MGP_AJ_P0031254 Hnf1b protein_coding protein_coding MGP_AJ_T0031255.1 MGP_AJ_G0018829.1 mouse_genomes_project 11 81999333 82056233 + MGP_AJ_P0031255 Hnf1b protein_coding protein_coding MGP_AJ_T0031256.1 MGP_AJ_G0018829.1 mouse_genomes_project 11 82000526 82013528 + MGP_AJ_P0031256 Hnf1b protein_coding protein_coding MGP_AJ_T0033153.1 MGP_AJ_G0019297.1 mouse_genomes_project 11 107801215 107806302 - MGP_AJ_P0033153 E030025P04Rik protein_coding protein_coding MGP_AJ_T0009693.1 MGP_AJ_G0007815.1 mouse_genomes_project 11 63501742 63501842 - Mir744 miRNA miRNA MGP_AJ_T0006342.1 MGP_AJ_G0005286.1 mouse_genomes_project 11 106159854 106176464 - C330019F10Rik lincRNA lincRNA MGP_AJ_T0032214.1 MGP_AJ_G0019071.1 mouse_genomes_project 11 97961631 97962510 - MGP_AJ_P0032214 Krtap1-3 protein_coding protein_coding MGP_AJ_T0012655.1 MGP_AJ_G0010750.1 mouse_genomes_project 11 66865403 66865574 + processed_pseudogene processed_pseudogene MGP_AJ_T0032415.1 MGP_AJ_G0019148.1 mouse_genomes_project 11 99549100 99552714 - MGP_AJ_P0032415 Psmc3ip protein_coding protein_coding MGP_AJ_T0032416.1 MGP_AJ_G0019148.1 mouse_genomes_project 11 99549409 99552678 - Psmc3ip protein_coding retained_intron MGP_AJ_T0032417.1 MGP_AJ_G0019148.1 mouse_genomes_project 11 99549434 99551438 - Psmc3ip protein_coding retained_intron MGP_AJ_T0032418.1 MGP_AJ_G0019148.1 mouse_genomes_project 11 99549764 99552654 - MGP_AJ_P0032418 Psmc3ip protein_coding nonsense_mediated_decay MGP_AJ_T0017229.1 MGP_AJ_G0015167.1 mouse_genomes_project 11 83964541 84005021 - 2610027K06Rik processed_transcript processed_transcript MGP_AJ_T0017230.1 MGP_AJ_G0015167.1 mouse_genomes_project 11 83968672 84005035 - 2610027K06Rik processed_transcript processed_transcript MGP_AJ_T0017231.1 MGP_AJ_G0015167.1 mouse_genomes_project 11 83968758 83977040 - 2610027K06Rik processed_transcript processed_transcript MGP_AJ_T0012673.1 MGP_AJ_G0010768.1 mouse_genomes_project 11 71699011 71699208 - processed_pseudogene processed_pseudogene MGP_AJ_T0012515.1 MGP_AJ_G0010610.1 mouse_genomes_project 11 18020754 18021048 + processed_pseudogene processed_pseudogene MGP_AJ_T0012513.1 MGP_AJ_G0010608.1 mouse_genomes_project 11 17650291 17650821 + processed_pseudogene processed_pseudogene MGP_AJ_T0028158.1 MGP_AJ_G0018044.1 mouse_genomes_project 11 18165441 18248971 + MGP_AJ_P0028158 Vps54 protein_coding protein_coding MGP_AJ_T0028159.1 MGP_AJ_G0018044.1 mouse_genomes_project 11 18165441 18248985 + MGP_AJ_P0028159 Vps54 protein_coding protein_coding MGP_AJ_T0028160.1 MGP_AJ_G0018044.1 mouse_genomes_project 11 18195131 18248173 + MGP_AJ_P0028160 Vps54 protein_coding protein_coding MGP_AJ_T0028161.1 MGP_AJ_G0018044.1 mouse_genomes_project 11 18205428 18219573 + Vps54 protein_coding processed_transcript MGP_AJ_T0028162.1 MGP_AJ_G0018044.1 mouse_genomes_project 11 18227560 18234461 + Vps54 protein_coding processed_transcript MGP_AJ_T0028163.1 MGP_AJ_G0018044.1 mouse_genomes_project 11 18240359 18242848 + Vps54 protein_coding processed_transcript MGP_AJ_T0028164.1 MGP_AJ_G0018044.1 mouse_genomes_project 11 18241935 18248386 + Vps54 protein_coding processed_transcript MGP_AJ_T0012579.1 MGP_AJ_G0010674.1 mouse_genomes_project 11 40779903 40781104 - processed_pseudogene processed_pseudogene MGP_AJ_T0031549.1 MGP_AJ_G0018895.1 mouse_genomes_project 11 87186458 87188748 - MGP_AJ_P0031549 Gm15698 protein_coding protein_coding MGP_AJ_T0031243.1 MGP_AJ_G0018824.1 mouse_genomes_project 11 81775109 81777218 + MGP_AJ_P0031243 Ccl4 protein_coding protein_coding MGP_AJ_T0031020.1 MGP_AJ_G0018759.1 mouse_genomes_project 11 76950207 76972757 - MGP_AJ_P0031020 Lgals9 protein_coding protein_coding MGP_AJ_T0031021.1 MGP_AJ_G0018759.1 mouse_genomes_project 11 76950212 76972735 - MGP_AJ_P0031021 Lgals9 protein_coding protein_coding MGP_AJ_T0031022.1 MGP_AJ_G0018759.1 mouse_genomes_project 11 76950628 76972642 - MGP_AJ_P0031022 Lgals9 protein_coding protein_coding MGP_AJ_T0031023.1 MGP_AJ_G0018759.1 mouse_genomes_project 11 76954114 76957564 - Lgals9 protein_coding retained_intron MGP_AJ_T0017151.1 MGP_AJ_G0015125.1 mouse_genomes_project 11 3503454 3506406 - Snhg15 processed_transcript processed_transcript MGP_AJ_T0017152.1 MGP_AJ_G0015125.1 mouse_genomes_project 11 3503455 3504594 - Snhg15 processed_transcript processed_transcript MGP_AJ_T0017153.1 MGP_AJ_G0015125.1 mouse_genomes_project 11 3503488 3506087 - Snhg15 processed_transcript processed_transcript MGP_AJ_T0017154.1 MGP_AJ_G0015125.1 mouse_genomes_project 11 3505544 3506392 - Snhg15 processed_transcript processed_transcript MGP_AJ_T0028262.1 MGP_AJ_G0018067.1 mouse_genomes_project 11 20978485 21005877 - MGP_AJ_P0028262 A830031A19Rik protein_coding protein_coding MGP_AJ_T0028941.1 MGP_AJ_G0018248.1 mouse_genomes_project 11 49326816 49341733 - MGP_AJ_P0028941 Ube2b protein_coding protein_coding MGP_AJ_T0028942.1 MGP_AJ_G0018248.1 mouse_genomes_project 11 49327986 49342011 - MGP_AJ_P0028942 Ube2b protein_coding protein_coding MGP_AJ_T0028943.1 MGP_AJ_G0018248.1 mouse_genomes_project 11 49338826 49341728 - Ube2b protein_coding processed_transcript MGP_AJ_T0028944.1 MGP_AJ_G0018248.1 mouse_genomes_project 11 49338902 49342011 - Ube2b protein_coding processed_transcript MGP_AJ_T0031567.1 MGP_AJ_G0018904.1 mouse_genomes_project 11 88238766 88244946 + MGP_AJ_P0031567 Tmem100 protein_coding protein_coding MGP_AJ_T0029221.1 MGP_AJ_G0018321.1 mouse_genomes_project 11 55873493 55884972 + MGP_AJ_P0029221 Lypd8 protein_coding protein_coding MGP_AJ_T0029222.1 MGP_AJ_G0018321.1 mouse_genomes_project 11 55873493 55885163 + MGP_AJ_P0029222 Lypd8 protein_coding protein_coding MGP_AJ_T0031401.1 MGP_AJ_G0018859.1 mouse_genomes_project 11 84761867 84862485 - MGP_AJ_P0031401 Vmp1 protein_coding protein_coding MGP_AJ_T0031402.1 MGP_AJ_G0018859.1 mouse_genomes_project 11 84762933 84780527 - Vmp1 protein_coding processed_transcript MGP_AJ_T0031403.1 MGP_AJ_G0018859.1 mouse_genomes_project 11 84763023 84764971 - Vmp1 protein_coding processed_transcript MGP_AJ_T0031404.1 MGP_AJ_G0018859.1 mouse_genomes_project 11 84763272 84764858 - Vmp1 protein_coding processed_transcript MGP_AJ_T0031405.1 MGP_AJ_G0018859.1 mouse_genomes_project 11 84763275 84780559 - Vmp1 protein_coding processed_transcript MGP_AJ_T0031406.1 MGP_AJ_G0018859.1 mouse_genomes_project 11 84821407 84842800 - Vmp1 protein_coding processed_transcript MGP_AJ_T0031407.1 MGP_AJ_G0018859.1 mouse_genomes_project 11 84843780 84862470 - Vmp1 protein_coding processed_transcript MGP_AJ_T0031408.1 MGP_AJ_G0018859.1 mouse_genomes_project 11 84843880 84850405 - MGP_AJ_P0031408 Vmp1 protein_coding protein_coding MGP_AJ_T0012607.1 MGP_AJ_G0010702.1 mouse_genomes_project 11 50902484 50903060 + processed_pseudogene processed_pseudogene MGP_AJ_T0029942.1 MGP_AJ_G0018505.1 mouse_genomes_project 11 67373391 67375557 - Wrap53 protein_coding processed_transcript MGP_AJ_T0029943.1 MGP_AJ_G0018505.1 mouse_genomes_project 11 67373392 67390980 - MGP_AJ_P0029943 Wrap53 protein_coding protein_coding MGP_AJ_T0029944.1 MGP_AJ_G0018505.1 mouse_genomes_project 11 67389363 67391911 - MGP_AJ_P0029944 Wrap53 protein_coding protein_coding MGP_AJ_T0028475.1 MGP_AJ_G0018116.1 mouse_genomes_project 11 30300868 30603399 - MGP_AJ_P0028475 Ranbp17 protein_coding protein_coding MGP_AJ_T0028476.1 MGP_AJ_G0018116.1 mouse_genomes_project 11 30302475 30428466 - MGP_AJ_P0028476 Ranbp17 protein_coding unknown_likely_coding MGP_AJ_T0028479.1 MGP_AJ_G0018116.1 mouse_genomes_project 11 30385274 30603295 - MGP_AJ_P0028479 Ranbp17 protein_coding nonsense_mediated_decay MGP_AJ_T0028480.1 MGP_AJ_G0018116.1 mouse_genomes_project 11 30391645 30418899 - Ranbp17 protein_coding processed_transcript MGP_AJ_T0028481.1 MGP_AJ_G0018116.1 mouse_genomes_project 11 30559659 30603283 - MGP_AJ_P0028481 Ranbp17 protein_coding protein_coding MGP_AJ_T0028482.1 MGP_AJ_G0018116.1 mouse_genomes_project 11 30574216 30602747 - MGP_AJ_P0028482 Ranbp17 protein_coding protein_coding MGP_AJ_T0017182.1 MGP_AJ_G0015141.1 mouse_genomes_project 11 42973809 43007561 + F630206G17Rik processed_transcript processed_transcript MGP_AJ_T0033193.1 MGP_AJ_G0019307.1 mouse_genomes_project 11 108464600 108510165 - MGP_AJ_P0033193 1700012B07Rik protein_coding protein_coding MGP_AJ_T0033194.1 MGP_AJ_G0019307.1 mouse_genomes_project 11 108468501 108510141 - MGP_AJ_P0033194 1700012B07Rik protein_coding protein_coding MGP_AJ_T0033195.1 MGP_AJ_G0019307.1 mouse_genomes_project 11 108468542 108491040 - MGP_AJ_P0033195 1700012B07Rik protein_coding protein_coding MGP_AJ_T0031421.1 MGP_AJ_G0018863.1 mouse_genomes_project 11 85100633 85159154 - MGP_AJ_P0031421 Ypel2 protein_coding protein_coding MGP_AJ_T0029233.1 MGP_AJ_G0018331.1 mouse_genomes_project 11 56049811 56050787 - MGP_AJ_P0029233 Olfr224 protein_coding protein_coding MGP_AJ_T0009716.1 MGP_AJ_G0007838.1 mouse_genomes_project 11 73468907 73468990 + Mir3971 miRNA miRNA MGP_AJ_T0017169.1 MGP_AJ_G0015133.1 mouse_genomes_project 11 19993647 20000930 + Gm12059 processed_transcript processed_transcript MGP_AJ_T0030698.1 MGP_AJ_G0018687.1 mouse_genomes_project 11 73598409 73625945 + MGP_AJ_P0030698 Crk protein_coding protein_coding MGP_AJ_T0030699.1 MGP_AJ_G0018687.1 mouse_genomes_project 11 73598434 73623536 + MGP_AJ_P0030699 Crk protein_coding protein_coding MGP_AJ_T0030700.1 MGP_AJ_G0018687.1 mouse_genomes_project 11 73598434 73626788 + MGP_AJ_P0030700 Crk protein_coding protein_coding MGP_AJ_T0030701.1 MGP_AJ_G0018687.1 mouse_genomes_project 11 73598461 73620670 + MGP_AJ_P0030701 Crk protein_coding protein_coding MGP_AJ_T0030702.1 MGP_AJ_G0018687.1 mouse_genomes_project 11 73598692 73620618 + MGP_AJ_P0030702 Crk protein_coding protein_coding MGP_AJ_T0031638.1 MGP_AJ_G0018918.1 mouse_genomes_project 11 92439644 92443638 + MGP_AJ_P0031638 Tob1 protein_coding protein_coding MGP_AJ_T0033882.1 MGP_AJ_G0019449.1 mouse_genomes_project 11 118255539 118282176 + MGP_AJ_P0033882 Slc26a11 protein_coding protein_coding MGP_AJ_T0033883.1 MGP_AJ_G0019449.1 mouse_genomes_project 11 118255570 118263497 + Slc26a11 protein_coding processed_transcript MGP_AJ_T0033884.1 MGP_AJ_G0019449.1 mouse_genomes_project 11 118255575 118272161 + Slc26a11 protein_coding processed_transcript MGP_AJ_T0033885.1 MGP_AJ_G0019449.1 mouse_genomes_project 11 118263890 118282146 + Slc26a11 protein_coding processed_transcript MGP_AJ_T0028258.1 MGP_AJ_G0018066.1 mouse_genomes_project 11 20790259 20826026 - MGP_AJ_P0028258 Papolg protein_coding protein_coding MGP_AJ_T0028259.1 MGP_AJ_G0018066.1 mouse_genomes_project 11 20792857 20796084 - MGP_AJ_P0028259 Papolg protein_coding protein_coding MGP_AJ_T0028260.1 MGP_AJ_G0018066.1 mouse_genomes_project 11 20794024 20822677 - Papolg protein_coding processed_transcript MGP_AJ_T0028261.1 MGP_AJ_G0018066.1 mouse_genomes_project 11 20797668 20826009 - MGP_AJ_P0028261 Papolg protein_coding protein_coding MGP_AJ_T0006273.1 MGP_AJ_G0005239.1 mouse_genomes_project 11 69597759 69599794 - Gm12325 lincRNA lincRNA MGP_AJ_T0029243.1 MGP_AJ_G0018337.1 mouse_genomes_project 11 56152038 56153131 + MGP_AJ_P0029243 protein_coding protein_coding MGP_AJ_T0032972.1 MGP_AJ_G0019259.1 mouse_genomes_project 11 104653377 104676962 + MGP_AJ_P0032972 Dcaf7 protein_coding protein_coding MGP_AJ_T0032973.1 MGP_AJ_G0019259.1 mouse_genomes_project 11 104653405 104666285 + Dcaf7 protein_coding retained_intron MGP_AJ_T0012523.1 MGP_AJ_G0010618.1 mouse_genomes_project 11 18431510 18432227 - processed_pseudogene processed_pseudogene MGP_AJ_T0012763.1 MGP_AJ_G0010858.1 mouse_genomes_project 11 105638253 105639085 - processed_pseudogene processed_pseudogene MGP_AJ_T0100586.1 MGP_AJ_G0038552.1 mouse_genomes_project 11 45816351 45816470 + Gm24422 snoRNA snoRNA MGP_AJ_T0028298.1 MGP_AJ_G0018074.1 mouse_genomes_project 11 25875918 25953303 + MGP_AJ_P0028298 Efemp1 protein_coding protein_coding MGP_AJ_T0028299.1 MGP_AJ_G0018074.1 mouse_genomes_project 11 25875958 25948095 + Efemp1 protein_coding processed_transcript MGP_AJ_T0028300.1 MGP_AJ_G0018074.1 mouse_genomes_project 11 25942267 25953303 + MGP_AJ_P0028300 Efemp1 protein_coding protein_coding MGP_AJ_T0012631.1 MGP_AJ_G0010726.1 mouse_genomes_project 11 57042471 57043947 - processed_pseudogene processed_pseudogene MGP_AJ_T0003175.1 MGP_AJ_G0002944.1 mouse_genomes_project 11 55123972 55126528 - 4933426K07Rik antisense antisense MGP_AJ_T0017206.1 MGP_AJ_G0015155.1 mouse_genomes_project 11 67139140 67141322 + processed_transcript processed_transcript MGP_AJ_T0017207.1 MGP_AJ_G0015155.1 mouse_genomes_project 11 67139488 67140055 + processed_transcript processed_transcript MGP_AJ_T0012569.1 MGP_AJ_G0010664.1 mouse_genomes_project 11 36889150 36889793 - processed_pseudogene processed_pseudogene MGP_AJ_T0030582.1 MGP_AJ_G0018664.1 mouse_genomes_project 11 72685693 72733864 + MGP_AJ_P0030582 Mettl16 protein_coding protein_coding MGP_AJ_T0030583.1 MGP_AJ_G0018664.1 mouse_genomes_project 11 72685693 72744495 + MGP_AJ_P0030583 Mettl16 protein_coding protein_coding MGP_AJ_T0030584.1 MGP_AJ_G0018664.1 mouse_genomes_project 11 72685779 72688485 + MGP_AJ_P0030584 Mettl16 protein_coding protein_coding MGP_AJ_T0030585.1 MGP_AJ_G0018664.1 mouse_genomes_project 11 72685788 72733864 + MGP_AJ_P0030585 Mettl16 protein_coding nonsense_mediated_decay MGP_AJ_T0030586.1 MGP_AJ_G0018664.1 mouse_genomes_project 11 72718722 72732933 + Mettl16 protein_coding retained_intron MGP_AJ_T0030587.1 MGP_AJ_G0018664.1 mouse_genomes_project 11 72723928 72733481 + Mettl16 protein_coding processed_transcript MGP_AJ_T0031505.1 MGP_AJ_G0018884.1 mouse_genomes_project 11 86089774 86091945 - MGP_AJ_P0031505 protein_coding protein_coding MGP_AJ_T0098538.1 MGP_AJ_G0036522.1 mouse_genomes_project 11 55232251 55232370 + n-R5s69 rRNA rRNA MGP_AJ_T0100575.1 MGP_AJ_G0038541.1 mouse_genomes_project 11 18176413 18176552 - Gm23582 snoRNA snoRNA MGP_AJ_T0033967.1 MGP_AJ_G0019462.1 mouse_genomes_project 11 119251281 119255409 - protein_coding retained_intron MGP_AJ_T0033968.1 MGP_AJ_G0019462.1 mouse_genomes_project 11 119251641 119255419 - protein_coding retained_intron MGP_AJ_T0033969.1 MGP_AJ_G0019462.1 mouse_genomes_project 11 119254259 119255399 - MGP_AJ_P0033969 protein_coding protein_coding MGP_AJ_T0031588.1 MGP_AJ_G0018909.1 mouse_genomes_project 11 88870623 88911919 - MGP_AJ_P0031588 Tom1l1 protein_coding protein_coding MGP_AJ_T0031589.1 MGP_AJ_G0018909.1 mouse_genomes_project 11 88870623 88911897 - MGP_AJ_P0031589 Tom1l1 protein_coding protein_coding MGP_AJ_T0031590.1 MGP_AJ_G0018909.1 mouse_genomes_project 11 88870623 88911888 - MGP_AJ_P0031590 Tom1l1 protein_coding protein_coding MGP_AJ_T0031591.1 MGP_AJ_G0018909.1 mouse_genomes_project 11 88871161 88874834 - Tom1l1 protein_coding retained_intron MGP_AJ_T0031592.1 MGP_AJ_G0018909.1 mouse_genomes_project 11 88881980 88888233 - Tom1l1 protein_coding retained_intron MGP_AJ_T0031593.1 MGP_AJ_G0018909.1 mouse_genomes_project 11 88895880 88911906 - MGP_AJ_P0031593 Tom1l1 protein_coding protein_coding MGP_AJ_T0031594.1 MGP_AJ_G0018909.1 mouse_genomes_project 11 88907598 88912683 - Tom1l1 protein_coding processed_transcript MGP_AJ_T0012701.1 MGP_AJ_G0010796.1 mouse_genomes_project 11 80771303 80772406 + processed_pseudogene processed_pseudogene MGP_AJ_T0006377.1 MGP_AJ_G0005313.1 mouse_genomes_project 11 118047752 118053092 + Gm26888 lincRNA lincRNA MGP_AJ_T0012481.1 MGP_AJ_G0010576.1 mouse_genomes_project 11 7212589 7213504 + processed_pseudogene processed_pseudogene MGP_AJ_T0030424.1 MGP_AJ_G0018607.1 mouse_genomes_project 11 70327423 70329971 + MGP_AJ_P0030424 Ggt6 protein_coding protein_coding MGP_AJ_T0030425.1 MGP_AJ_G0018607.1 mouse_genomes_project 11 70327428 70329969 + MGP_AJ_P0030425 Ggt6 protein_coding protein_coding MGP_AJ_T0033263.1 MGP_AJ_G0019324.1 mouse_genomes_project 11 112546268 112832981 - MGP_AJ_P0033263 Sdk2 protein_coding protein_coding MGP_AJ_T0033264.1 MGP_AJ_G0019324.1 mouse_genomes_project 11 112563897 112581414 - Sdk2 protein_coding processed_transcript MGP_AJ_T0033265.1 MGP_AJ_G0019324.1 mouse_genomes_project 11 112577429 112597268 - Sdk2 protein_coding processed_transcript MGP_AJ_T0033266.1 MGP_AJ_G0019324.1 mouse_genomes_project 11 112618946 112832738 - MGP_AJ_P0033266 Sdk2 protein_coding protein_coding MGP_AJ_T0033267.1 MGP_AJ_G0019324.1 mouse_genomes_project 11 112637107 112833809 - Sdk2 protein_coding processed_transcript MGP_AJ_T0033268.1 MGP_AJ_G0019324.1 mouse_genomes_project 11 112706689 112833792 - Sdk2 protein_coding processed_transcript MGP_AJ_T0032732.1 MGP_AJ_G0019206.1 mouse_genomes_project 11 101003929 101087414 - MGP_AJ_P0032732 Gpatch8 protein_coding protein_coding MGP_AJ_T0032733.1 MGP_AJ_G0019206.1 mouse_genomes_project 11 101005220 101036526 - Gpatch8 protein_coding processed_transcript MGP_AJ_T0032734.1 MGP_AJ_G0019206.1 mouse_genomes_project 11 101035572 101087414 - Gpatch8 protein_coding processed_transcript MGP_AJ_T0032735.1 MGP_AJ_G0019206.1 mouse_genomes_project 11 101036251 101087414 - Gpatch8 protein_coding processed_transcript MGP_AJ_T0032736.1 MGP_AJ_G0019206.1 mouse_genomes_project 11 101066451 101087391 - Gpatch8 protein_coding processed_transcript MGP_AJ_T0032737.1 MGP_AJ_G0019206.1 mouse_genomes_project 11 101067341 101087607 - Gpatch8 protein_coding processed_transcript MGP_AJ_T0027736.1 MGP_AJ_G0017945.1 mouse_genomes_project 11 1008233 1021008 + MGP_AJ_P0027736 Sec14l3 protein_coding protein_coding MGP_AJ_T0027737.1 MGP_AJ_G0017945.1 mouse_genomes_project 11 1008283 1012549 + Sec14l3 protein_coding retained_intron MGP_AJ_T0027738.1 MGP_AJ_G0017945.1 mouse_genomes_project 11 1008344 1019594 + Sec14l3 protein_coding processed_transcript MGP_AJ_T0027739.1 MGP_AJ_G0017945.1 mouse_genomes_project 11 1008344 1019594 + Sec14l3 protein_coding processed_transcript MGP_AJ_T0027740.1 MGP_AJ_G0017945.1 mouse_genomes_project 11 1014509 1020030 + Sec14l3 protein_coding processed_transcript MGP_AJ_T0032370.1 MGP_AJ_G0019140.1 mouse_genomes_project 11 99311440 99313780 + MGP_AJ_P0032370 Stat5a protein_coding protein_coding MGP_AJ_T0032371.1 MGP_AJ_G0019140.1 mouse_genomes_project 11 99312377 99315253 + MGP_AJ_P0032371 Stat5a protein_coding protein_coding MGP_AJ_T0032372.1 MGP_AJ_G0019140.1 mouse_genomes_project 11 99312382 99339691 + MGP_AJ_P0032372 Stat5a protein_coding protein_coding MGP_AJ_T0032373.1 MGP_AJ_G0019140.1 mouse_genomes_project 11 99312517 99331220 + Stat5a protein_coding processed_transcript MGP_AJ_T0032374.1 MGP_AJ_G0019140.1 mouse_genomes_project 11 99332900 99334044 + Stat5a protein_coding processed_transcript MGP_AJ_T0099359.1 MGP_AJ_G0037325.1 mouse_genomes_project 11 85621272 85621379 - Gm23137 snRNA snRNA MGP_AJ_T0009761.1 MGP_AJ_G0007883.1 mouse_genomes_project 11 106289998 106290056 + Mir6932 miRNA miRNA MGP_AJ_T0030677.1 MGP_AJ_G0018684.1 mouse_genomes_project 11 73505950 73546474 + MGP_AJ_P0030677 Pitpna protein_coding protein_coding MGP_AJ_T0030678.1 MGP_AJ_G0018684.1 mouse_genomes_project 11 73505961 73546448 + MGP_AJ_P0030678 Pitpna protein_coding protein_coding MGP_AJ_T0030679.1 MGP_AJ_G0018684.1 mouse_genomes_project 11 73505972 73544400 + MGP_AJ_P0030679 Pitpna protein_coding protein_coding MGP_AJ_T0030680.1 MGP_AJ_G0018684.1 mouse_genomes_project 11 73506012 73516409 + Pitpna protein_coding retained_intron MGP_AJ_T0030681.1 MGP_AJ_G0018684.1 mouse_genomes_project 11 73506012 73544103 + MGP_AJ_P0030681 Pitpna protein_coding nonsense_mediated_decay MGP_AJ_T0030682.1 MGP_AJ_G0018684.1 mouse_genomes_project 11 73538344 73543976 + Pitpna protein_coding processed_transcript MGP_AJ_T0031623.1 MGP_AJ_G0018916.1 mouse_genomes_project 11 92187435 92198875 - MGP_AJ_P0031623 Nme1 protein_coding protein_coding MGP_AJ_T0031624.1 MGP_AJ_G0018916.1 mouse_genomes_project 11 92189939 92196402 - MGP_AJ_P0031624 Nme1 protein_coding protein_coding MGP_AJ_T0031625.1 MGP_AJ_G0018916.1 mouse_genomes_project 11 92191146 92198629 - MGP_AJ_P0031625 Nme1 protein_coding protein_coding MGP_AJ_T0006256.1 MGP_AJ_G0005226.1 mouse_genomes_project 11 61169872 61174593 + B130011K05Rik lincRNA lincRNA MGP_AJ_T0031786.1 MGP_AJ_G0018954.1 mouse_genomes_project 11 93934184 93950435 + MGP_AJ_P0031786 Phb protein_coding protein_coding MGP_AJ_T0031787.1 MGP_AJ_G0018954.1 mouse_genomes_project 11 93934231 93939763 + Phb protein_coding processed_transcript MGP_AJ_T0031788.1 MGP_AJ_G0018954.1 mouse_genomes_project 11 93934241 93936160 + Phb protein_coding processed_transcript MGP_AJ_T0031789.1 MGP_AJ_G0018954.1 mouse_genomes_project 11 93934295 93949370 + MGP_AJ_P0031789 Phb protein_coding protein_coding MGP_AJ_T0031790.1 MGP_AJ_G0018954.1 mouse_genomes_project 11 93939570 93943962 + Phb protein_coding processed_transcript MGP_AJ_T0034127.1 MGP_AJ_G0019494.1 mouse_genomes_project 11 119639565 119642752 - MGP_AJ_P0034127 Cbr2 protein_coding protein_coding MGP_AJ_T0034128.1 MGP_AJ_G0019494.1 mouse_genomes_project 11 119639580 119640743 - Cbr2 protein_coding retained_intron MGP_AJ_T0034129.1 MGP_AJ_G0019494.1 mouse_genomes_project 11 119639855 119642582 - MGP_AJ_P0034129 Cbr2 protein_coding protein_coding MGP_AJ_T0034130.1 MGP_AJ_G0019494.1 mouse_genomes_project 11 119640750 119642590 - Cbr2 protein_coding retained_intron MGP_AJ_T0032927.1 MGP_AJ_G0019250.1 mouse_genomes_project 11 103728416 103728785 + MGP_AJ_P0032927 Gm10842 protein_coding protein_coding MGP_AJ_T0029516.1 MGP_AJ_G0018410.1 mouse_genomes_project 11 59199711 59207499 + MGP_AJ_P0029516 B9d1 protein_coding protein_coding MGP_AJ_T0029517.1 MGP_AJ_G0018410.1 mouse_genomes_project 11 59199770 59207499 + B9d1 protein_coding processed_transcript MGP_AJ_T0029518.1 MGP_AJ_G0018410.1 mouse_genomes_project 11 59199819 59202996 + B9d1 protein_coding processed_transcript MGP_AJ_T0029519.1 MGP_AJ_G0018410.1 mouse_genomes_project 11 59199822 59207499 + B9d1 protein_coding processed_transcript MGP_AJ_T0029520.1 MGP_AJ_G0018410.1 mouse_genomes_project 11 59203683 59207499 + MGP_AJ_P0029520 B9d1 protein_coding protein_coding MGP_AJ_T0029521.1 MGP_AJ_G0018410.1 mouse_genomes_project 11 59206882 59207499 + B9d1 protein_coding processed_transcript MGP_AJ_T0028414.1 MGP_AJ_G0018100.1 mouse_genomes_project 11 29252015 29255603 + MGP_AJ_P0028414 Snrnp25 protein_coding protein_coding MGP_AJ_T0028415.1 MGP_AJ_G0018100.1 mouse_genomes_project 11 29252045 29255016 + MGP_AJ_P0028415 Snrnp25 protein_coding protein_coding MGP_AJ_T0028416.1 MGP_AJ_G0018100.1 mouse_genomes_project 11 29252057 29254254 + Snrnp25 protein_coding processed_transcript MGP_AJ_T0028417.1 MGP_AJ_G0018100.1 mouse_genomes_project 11 29252087 29255491 + MGP_AJ_P0028417 Snrnp25 protein_coding protein_coding MGP_AJ_T0028418.1 MGP_AJ_G0018100.1 mouse_genomes_project 11 29253364 29255602 + Snrnp25 protein_coding retained_intron MGP_AJ_T0030653.1 MGP_AJ_G0018679.1 mouse_genomes_project 11 73377169 73385106 + Tlcd2 protein_coding processed_transcript MGP_AJ_T0030654.1 MGP_AJ_G0018679.1 mouse_genomes_project 11 73383521 73385902 + MGP_AJ_P0030654 Tlcd2 protein_coding protein_coding MGP_AJ_T0030655.1 MGP_AJ_G0018679.1 mouse_genomes_project 11 73383521 73386144 + MGP_AJ_P0030655 Tlcd2 protein_coding protein_coding MGP_AJ_T0030656.1 MGP_AJ_G0018679.1 mouse_genomes_project 11 73384153 73385630 + Tlcd2 protein_coding retained_intron MGP_AJ_T0033899.1 MGP_AJ_G0019452.1 mouse_genomes_project 11 118441617 118450652 - MGP_AJ_P0033899 Nptx1 protein_coding protein_coding MGP_AJ_T0032684.1 MGP_AJ_G0019201.1 mouse_genomes_project 11 100921446 100929797 + MGP_AJ_P0032684 Rundc3a protein_coding protein_coding MGP_AJ_T0032685.1 MGP_AJ_G0019201.1 mouse_genomes_project 11 100921446 100929797 + MGP_AJ_P0032685 Rundc3a protein_coding protein_coding MGP_AJ_T0032686.1 MGP_AJ_G0019201.1 mouse_genomes_project 11 100921446 100929797 + MGP_AJ_P0032686 Rundc3a protein_coding protein_coding MGP_AJ_T0032687.1 MGP_AJ_G0019201.1 mouse_genomes_project 11 100921446 100930598 + MGP_AJ_P0032687 Rundc3a protein_coding protein_coding MGP_AJ_T0032688.1 MGP_AJ_G0019201.1 mouse_genomes_project 11 100925907 100930598 + Rundc3a protein_coding retained_intron MGP_AJ_T0032689.1 MGP_AJ_G0019201.1 mouse_genomes_project 11 100926162 100927822 + Rundc3a protein_coding processed_transcript MGP_AJ_T0032690.1 MGP_AJ_G0019201.1 mouse_genomes_project 11 100927209 100930272 + Rundc3a protein_coding processed_transcript MGP_AJ_T0032691.1 MGP_AJ_G0019201.1 mouse_genomes_project 11 100927606 100930269 + Rundc3a protein_coding processed_transcript MGP_AJ_T0032692.1 MGP_AJ_G0019201.1 mouse_genomes_project 11 100927798 100930195 + Rundc3a protein_coding processed_transcript MGP_AJ_T0032693.1 MGP_AJ_G0019201.1 mouse_genomes_project 11 100927900 100928828 + Rundc3a protein_coding processed_transcript MGP_AJ_T0030881.1 MGP_AJ_G0018725.1 mouse_genomes_project 11 75935674 75981877 + MGP_AJ_P0030881 Phf12 protein_coding protein_coding MGP_AJ_T0030882.1 MGP_AJ_G0018725.1 mouse_genomes_project 11 75935722 75986202 + MGP_AJ_P0030882 Phf12 protein_coding protein_coding MGP_AJ_T0030883.1 MGP_AJ_G0018725.1 mouse_genomes_project 11 75979110 75981855 + MGP_AJ_P0030883 Phf12 protein_coding protein_coding MGP_AJ_T0030884.1 MGP_AJ_G0018725.1 mouse_genomes_project 11 75979324 75981624 + Phf12 protein_coding retained_intron MGP_AJ_T0030885.1 MGP_AJ_G0018725.1 mouse_genomes_project 11 75979358 75981845 + MGP_AJ_P0030885 Phf12 protein_coding nonsense_mediated_decay MGP_AJ_T0030886.1 MGP_AJ_G0018725.1 mouse_genomes_project 11 75979425 75984510 + MGP_AJ_P0030886 Phf12 protein_coding nonsense_mediated_decay MGP_AJ_T0030887.1 MGP_AJ_G0018725.1 mouse_genomes_project 11 75979448 75981679 + MGP_AJ_P0030887 Phf12 protein_coding nonsense_mediated_decay MGP_AJ_T0030888.1 MGP_AJ_G0018725.1 mouse_genomes_project 11 75983772 75985240 + Phf12 protein_coding retained_intron MGP_AJ_T0099371.1 MGP_AJ_G0037337.1 mouse_genomes_project 11 98241969 98242066 + Gm26324 snRNA snRNA MGP_AJ_T0029119.1 MGP_AJ_G0018290.1 mouse_genomes_project 11 52367761 52374969 + MGP_AJ_P0029119 Gpx3 protein_coding protein_coding MGP_AJ_T0029120.1 MGP_AJ_G0018290.1 mouse_genomes_project 11 52368080 52375770 + MGP_AJ_P0029120 Gpx3 protein_coding protein_coding MGP_AJ_T0029121.1 MGP_AJ_G0018290.1 mouse_genomes_project 11 52368234 52374927 + MGP_AJ_P0029121 Gpx3 protein_coding protein_coding MGP_AJ_T0029272.1 MGP_AJ_G0018356.1 mouse_genomes_project 11 56536905 56577291 - MGP_AJ_P0029272 Obscn protein_coding protein_coding MGP_AJ_T0029273.1 MGP_AJ_G0018356.1 mouse_genomes_project 11 56536978 56553144 - MGP_AJ_P0029273 Obscn protein_coding unknown_likely_coding MGP_AJ_T0029274.1 MGP_AJ_G0018356.1 mouse_genomes_project 11 56554325 56682664 - MGP_AJ_P0029274 Obscn protein_coding protein_coding MGP_AJ_T0029275.1 MGP_AJ_G0018356.1 mouse_genomes_project 11 56554325 56682700 - MGP_AJ_P0029275 Obscn protein_coding protein_coding MGP_AJ_T0029276.1 MGP_AJ_G0018356.1 mouse_genomes_project 11 56554325 56577264 - MGP_AJ_P0029276 Obscn protein_coding nonsense_mediated_decay MGP_AJ_T0029277.1 MGP_AJ_G0018356.1 mouse_genomes_project 11 56554326 56571720 - MGP_AJ_P0029277 Obscn protein_coding protein_coding MGP_AJ_T0029278.1 MGP_AJ_G0018356.1 mouse_genomes_project 11 56554840 56682637 - MGP_AJ_P0029278 Obscn protein_coding unknown_likely_coding MGP_AJ_T0029279.1 MGP_AJ_G0018356.1 mouse_genomes_project 11 56615852 56622496 - MGP_AJ_P0029279 Obscn protein_coding protein_coding MGP_AJ_T0033886.1 MGP_AJ_G0019450.1 mouse_genomes_project 11 118291191 118390652 + MGP_AJ_P0033886 Rnf213 protein_coding unknown_likely_coding MGP_AJ_T0033887.1 MGP_AJ_G0019450.1 mouse_genomes_project 11 118294182 118390640 + MGP_AJ_P0033887 Rnf213 protein_coding protein_coding MGP_AJ_T0033888.1 MGP_AJ_G0019450.1 mouse_genomes_project 11 118294182 118390643 + MGP_AJ_P0033888 Rnf213 protein_coding protein_coding MGP_AJ_T0033889.1 MGP_AJ_G0019450.1 mouse_genomes_project 11 118381281 118390642 + MGP_AJ_P0033889 Rnf213 protein_coding protein_coding MGP_AJ_T0006330.1 MGP_AJ_G0005277.1 mouse_genomes_project 11 94998945 95034107 - 2010300F17Rik lincRNA lincRNA MGP_AJ_T0006331.1 MGP_AJ_G0005277.1 mouse_genomes_project 11 95032697 95034081 - 2010300F17Rik lincRNA lincRNA MGP_AJ_T0028460.1 MGP_AJ_G0018111.1 mouse_genomes_project 11 29708688 29817159 + MGP_AJ_P0028460 Fbxw11 protein_coding protein_coding MGP_AJ_T0028461.1 MGP_AJ_G0018111.1 mouse_genomes_project 11 29708748 29718847 + Fbxw11 protein_coding processed_transcript MGP_AJ_T0028462.1 MGP_AJ_G0018111.1 mouse_genomes_project 11 29708830 29817379 + MGP_AJ_P0028462 Fbxw11 protein_coding protein_coding MGP_AJ_T0028463.1 MGP_AJ_G0018111.1 mouse_genomes_project 11 29708839 29817406 + MGP_AJ_P0028463 Fbxw11 protein_coding protein_coding MGP_AJ_T0028464.1 MGP_AJ_G0018111.1 mouse_genomes_project 11 29708868 29792618 + MGP_AJ_P0028464 Fbxw11 protein_coding nonsense_mediated_decay MGP_AJ_T0027879.1 MGP_AJ_G0017975.1 mouse_genomes_project 11 2497868 2510870 - MGP_AJ_P0027879 Ccdc117 protein_coding protein_coding MGP_AJ_T0032023.1 MGP_AJ_G0019014.1 mouse_genomes_project 11 96322422 96328860 - MGP_AJ_P0032023 Arl5c protein_coding protein_coding MGP_AJ_T0032024.1 MGP_AJ_G0019014.1 mouse_genomes_project 11 96326514 96328608 - MGP_AJ_P0032024 Arl5c protein_coding protein_coding MGP_AJ_T0027712.1 MGP_AJ_G0017939.1 mouse_genomes_project 11 840167 847811 - MGP_AJ_P0027712 Slc35e4 protein_coding protein_coding MGP_AJ_T0027713.1 MGP_AJ_G0017939.1 mouse_genomes_project 11 840168 847811 - MGP_AJ_P0027713 Slc35e4 protein_coding protein_coding MGP_AJ_T0012588.1 MGP_AJ_G0010683.1 mouse_genomes_project 11 45701715 45702376 + processed_pseudogene processed_pseudogene MGP_AJ_T0031991.1 MGP_AJ_G0019008.1 mouse_genomes_project 11 96099062 96103327 - MGP_AJ_P0031991 1700001P01Rik protein_coding protein_coding MGP_AJ_T0100584.1 MGP_AJ_G0038550.1 mouse_genomes_project 11 32335740 32335877 + Gm26070 snoRNA snoRNA MGP_AJ_T0098897.1 MGP_AJ_G0036880.1 mouse_genomes_project 11 52970505 52970629 + Gm12238 sense_intronic sense_intronic MGP_AJ_T0027902.1 MGP_AJ_G0017982.1 mouse_genomes_project 11 2829922 2840063 + MGP_AJ_P0027902 Aebp1 protein_coding protein_coding MGP_AJ_T0027903.1 MGP_AJ_G0017982.1 mouse_genomes_project 11 2835576 2840063 + MGP_AJ_P0027903 Aebp1 protein_coding protein_coding MGP_AJ_T0027904.1 MGP_AJ_G0017982.1 mouse_genomes_project 11 2837122 2838116 + Aebp1 protein_coding processed_transcript MGP_AJ_T0003267.1 MGP_AJ_G0003017.1 mouse_genomes_project 11 93639487 93648290 - Gm29477 antisense antisense MGP_AJ_T0030901.1 MGP_AJ_G0018729.1 mouse_genomes_project 11 76051642 76115491 + MGP_AJ_P0030901 Fam222b protein_coding protein_coding MGP_AJ_T0030902.1 MGP_AJ_G0018729.1 mouse_genomes_project 11 76051690 76114866 + MGP_AJ_P0030902 Fam222b protein_coding protein_coding MGP_AJ_T0030903.1 MGP_AJ_G0018729.1 mouse_genomes_project 11 76072992 76115491 + MGP_AJ_P0030903 Fam222b protein_coding protein_coding MGP_AJ_T0030030.1 MGP_AJ_G0018528.1 mouse_genomes_project 11 67659115 67660215 + MGP_AJ_P0030030 Tmem256 protein_coding protein_coding MGP_AJ_T0030031.1 MGP_AJ_G0018528.1 mouse_genomes_project 11 67659125 67660220 + MGP_AJ_P0030031 Tmem256 protein_coding protein_coding MGP_AJ_T0030032.1 MGP_AJ_G0018528.1 mouse_genomes_project 11 67659156 67660049 + Tmem256 protein_coding processed_transcript MGP_AJ_T0030033.1 MGP_AJ_G0018528.1 mouse_genomes_project 11 67659164 67660214 + Tmem256 protein_coding processed_transcript MGP_AJ_T0030034.1 MGP_AJ_G0018528.1 mouse_genomes_project 11 67659239 67660175 + Tmem256 protein_coding processed_transcript MGP_AJ_T0003352.1 MGP_AJ_G0003087.1 mouse_genomes_project 11 116995935 116999360 + Gm11738 antisense antisense MGP_AJ_T0029487.1 MGP_AJ_G0018406.1 mouse_genomes_project 11 59039899 59074502 - MGP_AJ_P0029487 Slc47a1 protein_coding protein_coding MGP_AJ_T0029488.1 MGP_AJ_G0018406.1 mouse_genomes_project 11 59039900 59074485 - MGP_AJ_P0029488 Slc47a1 protein_coding nonsense_mediated_decay MGP_AJ_T0029489.1 MGP_AJ_G0018406.1 mouse_genomes_project 11 59059227 59062171 - Slc47a1 protein_coding processed_transcript MGP_AJ_T0029490.1 MGP_AJ_G0018406.1 mouse_genomes_project 11 59059404 59074766 - MGP_AJ_P0029490 Slc47a1 protein_coding protein_coding MGP_AJ_T0030716.1 MGP_AJ_G0018693.1 mouse_genomes_project 11 73975614 74121299 - MGP_AJ_P0030716 Vps53 protein_coding protein_coding MGP_AJ_T0030717.1 MGP_AJ_G0018693.1 mouse_genomes_project 11 73975684 74121276 - MGP_AJ_P0030717 Vps53 protein_coding protein_coding MGP_AJ_T0030718.1 MGP_AJ_G0018693.1 mouse_genomes_project 11 73975685 74121269 - MGP_AJ_P0030718 Vps53 protein_coding protein_coding MGP_AJ_T0030719.1 MGP_AJ_G0018693.1 mouse_genomes_project 11 73991431 74022067 - Vps53 protein_coding retained_intron MGP_AJ_T0030720.1 MGP_AJ_G0018693.1 mouse_genomes_project 11 73992370 74121151 - MGP_AJ_P0030720 Vps53 protein_coding protein_coding MGP_AJ_T0030721.1 MGP_AJ_G0018693.1 mouse_genomes_project 11 73992375 74121151 - MGP_AJ_P0030721 Vps53 protein_coding nonsense_mediated_decay MGP_AJ_T0030722.1 MGP_AJ_G0018693.1 mouse_genomes_project 11 73992375 74121168 - MGP_AJ_P0030722 Vps53 protein_coding nonsense_mediated_decay MGP_AJ_T0030723.1 MGP_AJ_G0018693.1 mouse_genomes_project 11 74047438 74121184 - MGP_AJ_P0030723 Vps53 protein_coding nonsense_mediated_decay MGP_AJ_T0030724.1 MGP_AJ_G0018693.1 mouse_genomes_project 11 74048053 74107027 - MGP_AJ_P0030724 Vps53 protein_coding protein_coding MGP_AJ_T0030726.1 MGP_AJ_G0018693.1 mouse_genomes_project 11 74051822 74121239 - Vps53 protein_coding retained_intron MGP_AJ_T0030727.1 MGP_AJ_G0018693.1 mouse_genomes_project 11 74051938 74116583 - Vps53 protein_coding processed_transcript MGP_AJ_T0030728.1 MGP_AJ_G0018693.1 mouse_genomes_project 11 74051943 74071405 - Vps53 protein_coding processed_transcript MGP_AJ_T0030729.1 MGP_AJ_G0018693.1 mouse_genomes_project 11 74067077 74095906 - Vps53 protein_coding processed_transcript MGP_AJ_T0030730.1 MGP_AJ_G0018693.1 mouse_genomes_project 11 74068853 74121286 - MGP_AJ_P0030730 Vps53 protein_coding protein_coding MGP_AJ_T0030731.1 MGP_AJ_G0018693.1 mouse_genomes_project 11 74111340 74121264 - Vps53 protein_coding processed_transcript MGP_AJ_T0030732.1 MGP_AJ_G0018693.1 mouse_genomes_project 11 74117753 74121290 - MGP_AJ_P0030732 Vps53 protein_coding protein_coding MGP_AJ_T0031816.1 MGP_AJ_G0018962.1 mouse_genomes_project 11 94301917 94308107 + MGP_AJ_P0031816 Gip protein_coding protein_coding MGP_AJ_T0031817.1 MGP_AJ_G0018962.1 mouse_genomes_project 11 94302418 94308107 + MGP_AJ_P0031817 Gip protein_coding protein_coding MGP_AJ_T0033686.1 MGP_AJ_G0019408.1 mouse_genomes_project 11 115662622 115668481 - Jmjd6 protein_coding retained_intron MGP_AJ_T0033687.1 MGP_AJ_G0019408.1 mouse_genomes_project 11 115662622 115668649 - MGP_AJ_P0033687 Jmjd6 protein_coding protein_coding MGP_AJ_T0033688.1 MGP_AJ_G0019408.1 mouse_genomes_project 11 115662623 115668490 - Jmjd6 protein_coding retained_intron MGP_AJ_T0033689.1 MGP_AJ_G0019408.1 mouse_genomes_project 11 115662623 115668555 - MGP_AJ_P0033689 Jmjd6 protein_coding nonsense_mediated_decay MGP_AJ_T0033690.1 MGP_AJ_G0019408.1 mouse_genomes_project 11 115662625 115666436 - MGP_AJ_P0033690 Jmjd6 protein_coding protein_coding MGP_AJ_T0033691.1 MGP_AJ_G0019408.1 mouse_genomes_project 11 115662778 115667905 - MGP_AJ_P0033691 Jmjd6 protein_coding nonsense_mediated_decay MGP_AJ_T0033692.1 MGP_AJ_G0019408.1 mouse_genomes_project 11 115662803 115667920 - MGP_AJ_P0033692 Jmjd6 protein_coding nonsense_mediated_decay MGP_AJ_T0029140.1 MGP_AJ_G0018295.1 mouse_genomes_project 11 52599022 52626036 - MGP_AJ_P0029140 Slc36a3 protein_coding protein_coding MGP_AJ_T0029141.1 MGP_AJ_G0018295.1 mouse_genomes_project 11 52599032 52626014 - MGP_AJ_P0029141 Slc36a3 protein_coding nonsense_mediated_decay MGP_AJ_T0029142.1 MGP_AJ_G0018295.1 mouse_genomes_project 11 52623818 52626036 - MGP_AJ_P0029142 Slc36a3 protein_coding protein_coding MGP_AJ_T0028024.1 MGP_AJ_G0018013.1 mouse_genomes_project 11 6089823 6107650 + MGP_AJ_P0028024 Upp1 protein_coding protein_coding MGP_AJ_T0028025.1 MGP_AJ_G0018013.1 mouse_genomes_project 11 6089827 6107656 + MGP_AJ_P0028025 Upp1 protein_coding protein_coding MGP_AJ_T0028026.1 MGP_AJ_G0018013.1 mouse_genomes_project 11 6089965 6106215 + MGP_AJ_P0028026 Upp1 protein_coding protein_coding MGP_AJ_T0028027.1 MGP_AJ_G0018013.1 mouse_genomes_project 11 6090227 6107653 + MGP_AJ_P0028027 Upp1 protein_coding protein_coding MGP_AJ_T0028028.1 MGP_AJ_G0018013.1 mouse_genomes_project 11 6090268 6104808 + MGP_AJ_P0028028 Upp1 protein_coding protein_coding MGP_AJ_T0028029.1 MGP_AJ_G0018013.1 mouse_genomes_project 11 6090347 6091394 + Upp1 protein_coding retained_intron MGP_AJ_T0028030.1 MGP_AJ_G0018013.1 mouse_genomes_project 11 6090507 6104737 + MGP_AJ_P0028030 Upp1 protein_coding protein_coding MGP_AJ_T0028031.1 MGP_AJ_G0018013.1 mouse_genomes_project 11 6097401 6106235 + MGP_AJ_P0028031 Upp1 protein_coding protein_coding MGP_AJ_T0028032.1 MGP_AJ_G0018013.1 mouse_genomes_project 11 6104500 6107568 + Upp1 protein_coding retained_intron MGP_AJ_T0033819.1 MGP_AJ_G0019437.1 mouse_genomes_project 11 117364082 117376557 + MGP_AJ_P0033819 Engase protein_coding protein_coding MGP_AJ_T0033820.1 MGP_AJ_G0019437.1 mouse_genomes_project 11 117364194 117366507 + MGP_AJ_P0033820 Engase protein_coding nonsense_mediated_decay MGP_AJ_T0033821.1 MGP_AJ_G0019437.1 mouse_genomes_project 11 117364199 117370412 + MGP_AJ_P0033821 Engase protein_coding nonsense_mediated_decay MGP_AJ_T0033822.1 MGP_AJ_G0019437.1 mouse_genomes_project 11 117364213 117376435 + MGP_AJ_P0033822 Engase protein_coding nonsense_mediated_decay MGP_AJ_T0033823.1 MGP_AJ_G0019437.1 mouse_genomes_project 11 117364225 117375121 + MGP_AJ_P0033823 Engase protein_coding nonsense_mediated_decay MGP_AJ_T0033824.1 MGP_AJ_G0019437.1 mouse_genomes_project 11 117364236 117376557 + MGP_AJ_P0033824 Engase protein_coding nonsense_mediated_decay MGP_AJ_T0033825.1 MGP_AJ_G0019437.1 mouse_genomes_project 11 117368469 117370294 + Engase protein_coding retained_intron MGP_AJ_T0033826.1 MGP_AJ_G0019437.1 mouse_genomes_project 11 117369736 117375121 + Engase protein_coding retained_intron MGP_AJ_T0033827.1 MGP_AJ_G0019437.1 mouse_genomes_project 11 117371837 117374857 + MGP_AJ_P0033827 Engase protein_coding protein_coding MGP_AJ_T0031639.1 MGP_AJ_G0018919.1 mouse_genomes_project 11 92464833 92471060 - MGP_AJ_P0031639 Wfikkn2 protein_coding protein_coding MGP_AJ_T0031640.1 MGP_AJ_G0018919.1 mouse_genomes_project 11 92470799 92474381 - Wfikkn2 protein_coding processed_transcript MGP_AJ_T0030537.1 MGP_AJ_G0018645.1 mouse_genomes_project 11 71823193 71824132 - MGP_AJ_P0030537 Olfr395 protein_coding protein_coding MGP_AJ_T0030557.1 MGP_AJ_G0018656.1 mouse_genomes_project 11 72197757 72203389 + MGP_AJ_P0030557 Olfr59 protein_coding protein_coding MGP_AJ_T0030558.1 MGP_AJ_G0018656.1 mouse_genomes_project 11 72197815 72203225 + MGP_AJ_P0030558 Olfr59 protein_coding protein_coding MGP_AJ_T0030559.1 MGP_AJ_G0018656.1 mouse_genomes_project 11 72197830 72203675 + MGP_AJ_P0030559 Olfr59 protein_coding protein_coding MGP_AJ_T0030560.1 MGP_AJ_G0018656.1 mouse_genomes_project 11 72197854 72203224 + MGP_AJ_P0030560 Olfr59 protein_coding protein_coding MGP_AJ_T0099340.1 MGP_AJ_G0037306.1 mouse_genomes_project 11 69914546 69914649 + Gm23226 snRNA snRNA MGP_AJ_T0032136.1 MGP_AJ_G0019041.1 mouse_genomes_project 11 97152548 97164896 + MGP_AJ_P0032136 Msl1 protein_coding protein_coding MGP_AJ_T0032137.1 MGP_AJ_G0019041.1 mouse_genomes_project 11 97152823 97158085 + MGP_AJ_P0032137 Msl1 protein_coding protein_coding MGP_AJ_T0032138.1 MGP_AJ_G0019041.1 mouse_genomes_project 11 97152832 97163467 + MGP_AJ_P0032138 Msl1 protein_coding protein_coding MGP_AJ_T0032139.1 MGP_AJ_G0019041.1 mouse_genomes_project 11 97155686 97162640 + MGP_AJ_P0032139 Msl1 protein_coding protein_coding MGP_AJ_T0032140.1 MGP_AJ_G0019041.1 mouse_genomes_project 11 97157197 97161152 + MGP_AJ_P0032140 Msl1 protein_coding protein_coding MGP_AJ_T0032141.1 MGP_AJ_G0019041.1 mouse_genomes_project 11 97161303 97162812 + Msl1 protein_coding processed_transcript MGP_AJ_T0011798.1 MGP_AJ_G0009918.1 mouse_genomes_project 11 72153365 72154337 + MGP_AJ_P0011798 Olfr404-ps1 polymorphic_pseudogene polymorphic_pseudogene MGP_AJ_T0031747.1 MGP_AJ_G0018944.1 mouse_genomes_project 11 93304076 93336418 - MGP_AJ_P0031747 Itga3 protein_coding protein_coding MGP_AJ_T0031748.1 MGP_AJ_G0018944.1 mouse_genomes_project 11 93304077 93328852 - MGP_AJ_P0031748 Itga3 protein_coding protein_coding MGP_AJ_T0031749.1 MGP_AJ_G0018944.1 mouse_genomes_project 11 93304077 93336331 - MGP_AJ_P0031749 Itga3 protein_coding protein_coding MGP_AJ_T0031750.1 MGP_AJ_G0018944.1 mouse_genomes_project 11 93313026 93315896 - Itga3 protein_coding retained_intron MGP_AJ_T0031751.1 MGP_AJ_G0018944.1 mouse_genomes_project 11 93317971 93321910 - Itga3 protein_coding retained_intron MGP_AJ_T0031752.1 MGP_AJ_G0018944.1 mouse_genomes_project 11 93322797 93336414 - MGP_AJ_P0031752 Itga3 protein_coding protein_coding MGP_AJ_T0032253.1 MGP_AJ_G0019108.1 mouse_genomes_project 11 98508287 98511907 - MGP_AJ_P0032253 Krt36 protein_coding protein_coding MGP_AJ_T0003272.1 MGP_AJ_G0003021.1 mouse_genomes_project 11 94575679 94591507 - Hoxb5os antisense antisense MGP_AJ_T0003273.1 MGP_AJ_G0003021.1 mouse_genomes_project 11 94578148 94589675 - Hoxb5os antisense antisense MGP_AJ_T0101711.1 MGP_AJ_G0039657.1 mouse_genomes_project 11 103145664 103146991 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0099309.1 MGP_AJ_G0037275.1 mouse_genomes_project 11 4880801 4880863 - Gm27393 snRNA snRNA MGP_AJ_T0009667.1 MGP_AJ_G0007789.1 mouse_genomes_project 11 32741348 32741458 + Mir218-2 miRNA miRNA MGP_AJ_T0003277.1 MGP_AJ_G0003024.1 mouse_genomes_project 11 95054889 95056360 + Gm11537 antisense antisense MGP_AJ_T0003135.1 MGP_AJ_G0002907.1 mouse_genomes_project 11 25363068 25367008 + Gm12081 antisense antisense MGP_AJ_T0099311.1 MGP_AJ_G0037277.1 mouse_genomes_project 11 12310411 12310518 + Gm24707 snRNA snRNA MGP_AJ_T0029629.1 MGP_AJ_G0018429.1 mouse_genomes_project 11 60440268 60475144 - MGP_AJ_P0029629 Zfp287 protein_coding protein_coding MGP_AJ_T0029630.1 MGP_AJ_G0018429.1 mouse_genomes_project 11 60453674 60471885 - MGP_AJ_P0029630 Zfp287 protein_coding protein_coding MGP_AJ_T0029631.1 MGP_AJ_G0018429.1 mouse_genomes_project 11 60464825 60471890 - MGP_AJ_P0029631 Zfp287 protein_coding protein_coding MGP_AJ_T0029632.1 MGP_AJ_G0018429.1 mouse_genomes_project 11 60469941 60475164 - Zfp287 protein_coding retained_intron MGP_AJ_T0003146.1 MGP_AJ_G0002918.1 mouse_genomes_project 11 40736212 40743632 - antisense antisense MGP_AJ_T0031363.1 MGP_AJ_G0018850.1 mouse_genomes_project 11 84005362 84014749 + MGP_AJ_P0031363 Tbx2 protein_coding protein_coding MGP_AJ_T0028362.1 MGP_AJ_G0018085.1 mouse_genomes_project 11 26813511 26816900 - MGP_AJ_P0028362 protein_coding protein_coding MGP_AJ_T0029248.1 MGP_AJ_G0018342.1 mouse_genomes_project 11 56266200 56271362 + MGP_AJ_P0029248 Olfr315 protein_coding protein_coding MGP_AJ_T0029249.1 MGP_AJ_G0018342.1 mouse_genomes_project 11 56270942 56271940 + MGP_AJ_P0029249 Olfr315 protein_coding protein_coding MGP_AJ_T0032502.1 MGP_AJ_G0019168.1 mouse_genomes_project 11 99895114 99901648 - MGP_AJ_P0032502 Ptges3l protein_coding protein_coding MGP_AJ_T0032503.1 MGP_AJ_G0019168.1 mouse_genomes_project 11 99895114 99900984 - MGP_AJ_P0032503 Ptges3l protein_coding protein_coding MGP_AJ_T0032504.1 MGP_AJ_G0019168.1 mouse_genomes_project 11 99897174 99900984 - MGP_AJ_P0032504 Ptges3l protein_coding protein_coding MGP_AJ_T0032505.1 MGP_AJ_G0019168.1 mouse_genomes_project 11 99897722 99900171 - MGP_AJ_P0032505 Ptges3l protein_coding protein_coding MGP_AJ_T0032506.1 MGP_AJ_G0019168.1 mouse_genomes_project 11 99898138 99900547 - Ptges3l protein_coding retained_intron MGP_AJ_T0033842.1 MGP_AJ_G0019441.1 mouse_genomes_project 11 117932543 117937208 - MGP_AJ_P0033842 Cbx8 protein_coding protein_coding MGP_AJ_T0033843.1 MGP_AJ_G0019441.1 mouse_genomes_project 11 117935291 117937070 - Cbx8 protein_coding processed_transcript MGP_AJ_T0033844.1 MGP_AJ_G0019441.1 mouse_genomes_project 11 117935422 117937150 - Cbx8 protein_coding processed_transcript MGP_AJ_T0028340.1 MGP_AJ_G0018082.1 mouse_genomes_project 11 26541379 26573063 + MGP_AJ_P0028340 Clhc1 protein_coding protein_coding MGP_AJ_T0028341.1 MGP_AJ_G0018082.1 mouse_genomes_project 11 26558372 26573042 + Clhc1 protein_coding processed_transcript MGP_AJ_T0028342.1 MGP_AJ_G0018082.1 mouse_genomes_project 11 26558389 26572900 + Clhc1 protein_coding processed_transcript MGP_AJ_T0028682.1 MGP_AJ_G0018174.1 mouse_genomes_project 11 44064552 44739103 - MGP_AJ_P0028682 Sgcd protein_coding protein_coding MGP_AJ_T0028683.1 MGP_AJ_G0018174.1 mouse_genomes_project 11 44139094 44550585 - MGP_AJ_P0028683 Sgcd protein_coding protein_coding MGP_AJ_T0028684.1 MGP_AJ_G0018174.1 mouse_genomes_project 11 44517618 44806682 - Sgcd protein_coding processed_transcript MGP_AJ_T0028685.1 MGP_AJ_G0018174.1 mouse_genomes_project 11 44738942 45149193 - Sgcd protein_coding processed_transcript MGP_AJ_T0032226.1 MGP_AJ_G0019083.1 mouse_genomes_project 11 98107874 98107952 - MGP_AJ_P0032226 Gm14180 protein_coding protein_coding MGP_AJ_T0003149.1 MGP_AJ_G0002921.1 mouse_genomes_project 11 43318191 43319305 - Gm16034 antisense antisense MGP_AJ_T0027611.1 MGP_AJ_G0017924.1 mouse_genomes_project 11 5893 59651 - MGP_AJ_P0027611 protein_coding unknown_likely_coding MGP_AJ_T0027612.1 MGP_AJ_G0017924.1 mouse_genomes_project 11 11449 63800 - MGP_AJ_P0027612 protein_coding unknown_likely_coding MGP_AJ_T0027613.1 MGP_AJ_G0017924.1 mouse_genomes_project 11 11489 47495 - protein_coding processed_transcript MGP_AJ_T0027614.1 MGP_AJ_G0017924.1 mouse_genomes_project 11 16770 60295 - protein_coding processed_transcript MGP_AJ_T0027615.1 MGP_AJ_G0017924.1 mouse_genomes_project 11 29042 100929 - MGP_AJ_P0027615 protein_coding protein_coding MGP_AJ_T0027616.1 MGP_AJ_G0017924.1 mouse_genomes_project 11 29091 75102 - MGP_AJ_P0027616 protein_coding protein_coding MGP_AJ_T0027617.1 MGP_AJ_G0017924.1 mouse_genomes_project 11 72451 100929 - MGP_AJ_P0027617 protein_coding protein_coding MGP_AJ_T0033100.1 MGP_AJ_G0019287.1 mouse_genomes_project 11 105848762 106115827 - MGP_AJ_P0033100 Pitpnc1 protein_coding protein_coding MGP_AJ_T0033101.1 MGP_AJ_G0019287.1 mouse_genomes_project 11 105848762 105979584 - MGP_AJ_P0033101 Pitpnc1 protein_coding protein_coding MGP_AJ_T0033102.1 MGP_AJ_G0019287.1 mouse_genomes_project 11 105867089 105992020 - MGP_AJ_P0033102 Pitpnc1 protein_coding protein_coding MGP_AJ_T0033103.1 MGP_AJ_G0019287.1 mouse_genomes_project 11 105962584 105979473 - Pitpnc1 protein_coding processed_transcript MGP_AJ_T0029097.1 MGP_AJ_G0018286.1 mouse_genomes_project 11 51986024 52159176 + MGP_AJ_P0029097 Rapgef6 protein_coding protein_coding MGP_AJ_T0029098.1 MGP_AJ_G0018286.1 mouse_genomes_project 11 51986066 52016413 + Rapgef6 protein_coding processed_transcript MGP_AJ_T0029099.1 MGP_AJ_G0018286.1 mouse_genomes_project 11 51986067 52092692 + MGP_AJ_P0029099 Rapgef6 protein_coding protein_coding MGP_AJ_T0029100.1 MGP_AJ_G0018286.1 mouse_genomes_project 11 51986067 52156870 + MGP_AJ_P0029100 Rapgef6 protein_coding protein_coding MGP_AJ_T0029101.1 MGP_AJ_G0018286.1 mouse_genomes_project 11 51986088 52024930 + Rapgef6 protein_coding processed_transcript MGP_AJ_T0029102.1 MGP_AJ_G0018286.1 mouse_genomes_project 11 52052881 52096547 + Rapgef6 protein_coding processed_transcript MGP_AJ_T0029103.1 MGP_AJ_G0018286.1 mouse_genomes_project 11 52080050 52148064 + MGP_AJ_P0029103 Rapgef6 protein_coding protein_coding MGP_AJ_T0029104.1 MGP_AJ_G0018286.1 mouse_genomes_project 11 52080050 52147985 + MGP_AJ_P0029104 Rapgef6 protein_coding protein_coding MGP_AJ_T0029105.1 MGP_AJ_G0018286.1 mouse_genomes_project 11 52151391 52156377 + MGP_AJ_P0029105 Rapgef6 protein_coding protein_coding MGP_AJ_T0012782.1 MGP_AJ_G0010877.1 mouse_genomes_project 11 114480454 114480523 - processed_pseudogene processed_pseudogene MGP_AJ_T0003369.1 MGP_AJ_G0003100.1 mouse_genomes_project 11 119951215 119975207 + Gm11775 antisense antisense MGP_AJ_T0032308.1 MGP_AJ_G0019126.1 mouse_genomes_project 11 98926707 98978204 - MGP_AJ_P0032308 Acly protein_coding protein_coding MGP_AJ_T0032309.1 MGP_AJ_G0019126.1 mouse_genomes_project 11 98926710 98978204 - MGP_AJ_P0032309 Acly protein_coding protein_coding MGP_AJ_T0032310.1 MGP_AJ_G0019126.1 mouse_genomes_project 11 98926712 98973820 - MGP_AJ_P0032310 Acly protein_coding protein_coding MGP_AJ_T0032311.1 MGP_AJ_G0019126.1 mouse_genomes_project 11 98927580 98929886 - Acly protein_coding processed_transcript MGP_AJ_T0032312.1 MGP_AJ_G0019126.1 mouse_genomes_project 11 98932626 98944569 - Acly protein_coding processed_transcript MGP_AJ_T0032313.1 MGP_AJ_G0019126.1 mouse_genomes_project 11 98948472 98949323 - Acly protein_coding processed_transcript MGP_AJ_T0032314.1 MGP_AJ_G0019126.1 mouse_genomes_project 11 98950803 98978073 - MGP_AJ_P0032314 Acly protein_coding protein_coding MGP_AJ_T0003265.1 MGP_AJ_G0003015.1 mouse_genomes_project 11 93572458 93587309 + Gm11520 antisense antisense MGP_AJ_T0012576.1 MGP_AJ_G0010671.1 mouse_genomes_project 11 38722552 38723465 + processed_pseudogene processed_pseudogene MGP_AJ_T0028068.1 MGP_AJ_G0018021.1 mouse_genomes_project 11 8910987 8972270 - MGP_AJ_P0028068 Grb10 protein_coding protein_coding MGP_AJ_T0028069.1 MGP_AJ_G0018021.1 mouse_genomes_project 11 8917158 8919057 - Grb10 protein_coding processed_transcript MGP_AJ_T0028070.1 MGP_AJ_G0018021.1 mouse_genomes_project 11 8925336 8926775 - Grb10 protein_coding processed_transcript MGP_AJ_T0028071.1 MGP_AJ_G0018021.1 mouse_genomes_project 11 8930044 8936478 - Grb10 protein_coding processed_transcript MGP_AJ_T0028072.1 MGP_AJ_G0018021.1 mouse_genomes_project 11 8935202 9020151 - MGP_AJ_P0028072 Grb10 protein_coding protein_coding MGP_AJ_T0028073.1 MGP_AJ_G0018021.1 mouse_genomes_project 11 8948197 9007578 - MGP_AJ_P0028073 Grb10 protein_coding protein_coding MGP_AJ_T0028074.1 MGP_AJ_G0018021.1 mouse_genomes_project 11 8948291 9008007 - MGP_AJ_P0028074 Grb10 protein_coding protein_coding MGP_AJ_T0006187.1 MGP_AJ_G0005166.1 mouse_genomes_project 11 19520203 19530783 - Gm26829 lincRNA lincRNA MGP_AJ_T0029231.1 MGP_AJ_G0018329.1 mouse_genomes_project 11 56036886 56039359 - MGP_AJ_P0029231 Olfr329-ps protein_coding protein_coding MGP_AJ_T0033775.1 MGP_AJ_G0019426.1 mouse_genomes_project 11 116742920 116748638 - Tha1 protein_coding processed_transcript MGP_AJ_T0033776.1 MGP_AJ_G0019426.1 mouse_genomes_project 11 116742920 116748616 - MGP_AJ_P0033776 Tha1 protein_coding protein_coding MGP_AJ_T0033777.1 MGP_AJ_G0019426.1 mouse_genomes_project 11 116744693 116746983 - Tha1 protein_coding processed_transcript MGP_AJ_T0012660.1 MGP_AJ_G0010755.1 mouse_genomes_project 11 67957316 67957690 - processed_pseudogene processed_pseudogene MGP_AJ_T0098820.1 MGP_AJ_G0036804.1 mouse_genomes_project 11 115001873 115001999 - Gm26413 scaRNA scaRNA MGP_AJ_T0028881.1 MGP_AJ_G0018231.1 mouse_genomes_project 11 48326174 48327116 + MGP_AJ_P0028881 Olfr54 protein_coding protein_coding MGP_AJ_T0034237.1 MGP_AJ_G0019520.1 mouse_genomes_project 11 120608005 120621522 + MGP_AJ_P0034237 Metrnl protein_coding protein_coding MGP_AJ_T0034238.1 MGP_AJ_G0019520.1 mouse_genomes_project 11 120608224 120621295 + MGP_AJ_P0034238 Metrnl protein_coding protein_coding MGP_AJ_T0029664.1 MGP_AJ_G0018438.1 mouse_genomes_project 11 61632729 61671390 - MGP_AJ_P0029664 Hs3st3b1 protein_coding protein_coding MGP_AJ_T0012485.1 MGP_AJ_G0010580.1 mouse_genomes_project 11 9944745 9945463 + processed_pseudogene processed_pseudogene MGP_AJ_T0031699.1 MGP_AJ_G0018929.1 mouse_genomes_project 11 92789785 92836926 - MGP_AJ_P0031699 Acsf2 protein_coding protein_coding MGP_AJ_T0031700.1 MGP_AJ_G0018929.1 mouse_genomes_project 11 92791531 92798133 - Acsf2 protein_coding processed_transcript MGP_AJ_T0031702.1 MGP_AJ_G0018929.1 mouse_genomes_project 11 92803546 92805570 - Acsf2 protein_coding processed_transcript MGP_AJ_T0031703.1 MGP_AJ_G0018929.1 mouse_genomes_project 11 92804532 92836824 - Acsf2 protein_coding processed_transcript MGP_AJ_T0102258.1 MGP_AJ_G0040001.1 mouse_genomes_project 11 98092577 98092714 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0003306.1 MGP_AJ_G0003048.1 mouse_genomes_project 11 101739474 101741671 - Gm20511 antisense antisense MGP_AJ_T0029297.1 MGP_AJ_G0018362.1 mouse_genomes_project 11 56774960 56791673 - MGP_AJ_P0029297 Arf1 protein_coding protein_coding MGP_AJ_T0031803.1 MGP_AJ_G0018959.1 mouse_genomes_project 11 94106882 94115383 + MGP_AJ_P0031803 Gngt2 protein_coding protein_coding MGP_AJ_T0031804.1 MGP_AJ_G0018959.1 mouse_genomes_project 11 94111929 94115383 + MGP_AJ_P0031804 Gngt2 protein_coding protein_coding MGP_AJ_T0031805.1 MGP_AJ_G0018959.1 mouse_genomes_project 11 94111943 94115383 + MGP_AJ_P0031805 Gngt2 protein_coding protein_coding MGP_AJ_T0031806.1 MGP_AJ_G0018959.1 mouse_genomes_project 11 94112295 94115383 + MGP_AJ_P0031806 Gngt2 protein_coding protein_coding MGP_AJ_T0031807.1 MGP_AJ_G0018959.1 mouse_genomes_project 11 94112297 94115383 + MGP_AJ_P0031807 Gngt2 protein_coding protein_coding MGP_AJ_T0031808.1 MGP_AJ_G0018959.1 mouse_genomes_project 11 94112869 94115383 + MGP_AJ_P0031808 Gngt2 protein_coding protein_coding MGP_AJ_T0031809.1 MGP_AJ_G0018959.1 mouse_genomes_project 11 94113246 94115383 + MGP_AJ_P0031809 Gngt2 protein_coding protein_coding MGP_AJ_T0029852.1 MGP_AJ_G0018483.1 mouse_genomes_project 11 66836097 66842115 + MGP_AJ_P0029852 Aurkb protein_coding protein_coding MGP_AJ_T0029853.1 MGP_AJ_G0018483.1 mouse_genomes_project 11 66836102 66842115 + MGP_AJ_P0029853 Aurkb protein_coding protein_coding MGP_AJ_T0029854.1 MGP_AJ_G0018483.1 mouse_genomes_project 11 66836121 66838669 + Aurkb protein_coding processed_transcript MGP_AJ_T0029855.1 MGP_AJ_G0018483.1 mouse_genomes_project 11 66836140 66838747 + Aurkb protein_coding retained_intron MGP_AJ_T0029856.1 MGP_AJ_G0018483.1 mouse_genomes_project 11 66838427 66839524 + Aurkb protein_coding retained_intron MGP_AJ_T0029857.1 MGP_AJ_G0018483.1 mouse_genomes_project 11 66838978 66839526 + Aurkb protein_coding retained_intron MGP_AJ_T0029858.1 MGP_AJ_G0018483.1 mouse_genomes_project 11 66839019 66841188 + Aurkb protein_coding retained_intron MGP_AJ_T0029859.1 MGP_AJ_G0018483.1 mouse_genomes_project 11 66841013 66841590 + Aurkb protein_coding processed_transcript MGP_AJ_T0006379.1 MGP_AJ_G0005315.1 mouse_genomes_project 11 118840394 118843958 + Gm11766 lincRNA lincRNA MGP_AJ_T0027880.1 MGP_AJ_G0017976.1 mouse_genomes_project 11 2534312 2658877 + MGP_AJ_P0027880 Ankrd36 protein_coding protein_coding MGP_AJ_T0027881.1 MGP_AJ_G0017976.1 mouse_genomes_project 11 2534325 2548917 + MGP_AJ_P0027881 Ankrd36 protein_coding protein_coding MGP_AJ_T0027882.1 MGP_AJ_G0017976.1 mouse_genomes_project 11 2534445 2630349 + MGP_AJ_P0027882 Ankrd36 protein_coding protein_coding MGP_AJ_T0027883.1 MGP_AJ_G0017976.1 mouse_genomes_project 11 2538715 2548767 + Ankrd36 protein_coding processed_transcript MGP_AJ_T0027884.1 MGP_AJ_G0017976.1 mouse_genomes_project 11 2598617 2615342 + MGP_AJ_P0027884 Ankrd36 protein_coding protein_coding MGP_AJ_T0006192.1 MGP_AJ_G0005171.1 mouse_genomes_project 11 21007385 21008194 + Gm12063 lincRNA lincRNA MGP_AJ_T0102265.1 MGP_AJ_G0040008.1 mouse_genomes_project 11 115598118 115607675 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0006367.1 MGP_AJ_G0005305.1 mouse_genomes_project 11 115895545 115897431 + Gm11731 lincRNA lincRNA MGP_AJ_T0012626.1 MGP_AJ_G0010721.1 mouse_genomes_project 11 55674905 55676179 + processed_pseudogene processed_pseudogene MGP_AJ_T0006247.1 MGP_AJ_G0005218.1 mouse_genomes_project 11 57505483 57505874 + 1810063I02Rik lincRNA lincRNA MGP_AJ_T0100623.1 MGP_AJ_G0038589.1 mouse_genomes_project 11 96108728 96108823 - Gm27326 snoRNA snoRNA MGP_AJ_T0006193.1 MGP_AJ_G0005172.1 mouse_genomes_project 11 21130718 21134574 - Gm12065 lincRNA lincRNA MGP_AJ_T0028596.1 MGP_AJ_G0018149.1 mouse_genomes_project 11 40842270 40867647 + MGP_AJ_P0028596 Pwwp2a protein_coding protein_coding MGP_AJ_T0028597.1 MGP_AJ_G0018149.1 mouse_genomes_project 11 40842330 40881228 + MGP_AJ_P0028597 Pwwp2a protein_coding protein_coding MGP_AJ_T0028598.1 MGP_AJ_G0018149.1 mouse_genomes_project 11 40842820 40844326 + Pwwp2a protein_coding processed_transcript MGP_AJ_T0028599.1 MGP_AJ_G0018149.1 mouse_genomes_project 11 40844416 40867647 + MGP_AJ_P0028599 Pwwp2a protein_coding protein_coding MGP_AJ_T0028600.1 MGP_AJ_G0018149.1 mouse_genomes_project 11 40865512 40882308 + Pwwp2a protein_coding processed_transcript MGP_AJ_T0028601.1 MGP_AJ_G0018149.1 mouse_genomes_project 11 40878479 40881649 + Pwwp2a protein_coding processed_transcript MGP_AJ_T0017183.1 MGP_AJ_G0015142.1 mouse_genomes_project 11 45967573 45977421 - Gm16170 processed_transcript processed_transcript MGP_AJ_T0100565.1 MGP_AJ_G0038531.1 mouse_genomes_project 11 3505678 3505811 - Snora9 snoRNA snoRNA MGP_AJ_T0030375.1 MGP_AJ_G0018592.1 mouse_genomes_project 11 68953741 69001305 - MGP_AJ_P0030375 Nlrp1a protein_coding protein_coding MGP_AJ_T0030376.1 MGP_AJ_G0018592.1 mouse_genomes_project 11 68953741 68998969 - MGP_AJ_P0030376 Nlrp1a protein_coding protein_coding MGP_AJ_T0029224.1 MGP_AJ_G0018323.1 mouse_genomes_project 11 55939023 55948123 + MGP_AJ_P0029224 Gm12253 protein_coding protein_coding MGP_AJ_T0011300.1 MGP_AJ_G0009422.1 mouse_genomes_project 11 51104829 51105139 + Gm22275 misc_RNA misc_RNA MGP_AJ_T0028521.1 MGP_AJ_G0018131.1 mouse_genomes_project 11 32965030 33111134 - MGP_AJ_P0028521 Wwc1 protein_coding protein_coding MGP_AJ_T0028522.1 MGP_AJ_G0018131.1 mouse_genomes_project 11 32978992 32980356 - Wwc1 protein_coding processed_transcript MGP_AJ_T0028523.1 MGP_AJ_G0018131.1 mouse_genomes_project 11 32997139 33003984 - Wwc1 protein_coding processed_transcript MGP_AJ_T0033180.1 MGP_AJ_G0019304.1 mouse_genomes_project 11 108246126 108284511 - MGP_AJ_P0033180 Wipi1 protein_coding protein_coding MGP_AJ_T0033181.1 MGP_AJ_G0019304.1 mouse_genomes_project 11 108247927 108284511 - MGP_AJ_P0033181 Wipi1 protein_coding protein_coding MGP_AJ_T0033182.1 MGP_AJ_G0019304.1 mouse_genomes_project 11 108255307 108284511 - MGP_AJ_P0033182 Wipi1 protein_coding protein_coding MGP_AJ_T0033183.1 MGP_AJ_G0019304.1 mouse_genomes_project 11 108284317 108285046 - Wipi1 protein_coding processed_transcript MGP_AJ_T0029265.1 MGP_AJ_G0018351.1 mouse_genomes_project 11 56474125 56480376 - MGP_AJ_P0029265 protein_coding protein_coding MGP_AJ_T0099338.1 MGP_AJ_G0037304.1 mouse_genomes_project 11 67033604 67033709 + Gm23194 snRNA snRNA MGP_AJ_T0012512.1 MGP_AJ_G0010607.1 mouse_genomes_project 11 17497292 17497915 - processed_pseudogene processed_pseudogene MGP_AJ_T0030781.1 MGP_AJ_G0018707.1 mouse_genomes_project 11 74884567 74885597 + Blmh protein_coding retained_intron MGP_AJ_T0030782.1 MGP_AJ_G0018707.1 mouse_genomes_project 11 74884577 74907766 + Blmh protein_coding retained_intron MGP_AJ_T0030783.1 MGP_AJ_G0018707.1 mouse_genomes_project 11 74884659 74906783 + MGP_AJ_P0030783 Blmh protein_coding protein_coding MGP_AJ_T0030784.1 MGP_AJ_G0018707.1 mouse_genomes_project 11 74884689 74926734 + MGP_AJ_P0030784 Blmh protein_coding nonsense_mediated_decay MGP_AJ_T0030785.1 MGP_AJ_G0018707.1 mouse_genomes_project 11 74884719 74927289 + MGP_AJ_P0030785 Blmh protein_coding protein_coding MGP_AJ_T0030786.1 MGP_AJ_G0018707.1 mouse_genomes_project 11 74884885 74893417 + MGP_AJ_P0030786 Blmh protein_coding protein_coding MGP_AJ_T0030787.1 MGP_AJ_G0018707.1 mouse_genomes_project 11 74884906 74891371 + MGP_AJ_P0030787 Blmh protein_coding protein_coding MGP_AJ_T0030788.1 MGP_AJ_G0018707.1 mouse_genomes_project 11 74901166 74905820 + Blmh protein_coding processed_transcript MGP_AJ_T0033124.1 MGP_AJ_G0019294.1 mouse_genomes_project 11 106998405 107048336 + MGP_AJ_P0033124 Apoh protein_coding protein_coding MGP_AJ_T0033125.1 MGP_AJ_G0019294.1 mouse_genomes_project 11 107037283 107048281 + MGP_AJ_P0033125 Apoh protein_coding protein_coding MGP_AJ_T0033126.1 MGP_AJ_G0019294.1 mouse_genomes_project 11 107037288 107054886 + MGP_AJ_P0033126 Apoh protein_coding protein_coding MGP_AJ_T0033127.1 MGP_AJ_G0019294.1 mouse_genomes_project 11 107047723 107061406 + MGP_AJ_P0033127 Apoh protein_coding protein_coding MGP_AJ_T0102237.1 MGP_AJ_G0039980.1 mouse_genomes_project 11 71407442 71407528 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0032824.1 MGP_AJ_G0019226.1 mouse_genomes_project 11 101719026 101747668 + MGP_AJ_P0032824 Fmnl1 protein_coding protein_coding MGP_AJ_T0032825.1 MGP_AJ_G0019226.1 mouse_genomes_project 11 101719232 101747662 + MGP_AJ_P0032825 Fmnl1 protein_coding protein_coding MGP_AJ_T0032826.1 MGP_AJ_G0019226.1 mouse_genomes_project 11 101719232 101747675 + MGP_AJ_P0032826 Fmnl1 protein_coding unknown_likely_coding MGP_AJ_T0032827.1 MGP_AJ_G0019226.1 mouse_genomes_project 11 101729633 101739133 + Fmnl1 protein_coding processed_transcript MGP_AJ_T0032828.1 MGP_AJ_G0019226.1 mouse_genomes_project 11 101734178 101739423 + Fmnl1 protein_coding processed_transcript MGP_AJ_T0032829.1 MGP_AJ_G0019226.1 mouse_genomes_project 11 101741086 101747662 + Fmnl1 protein_coding retained_intron MGP_AJ_T0032830.1 MGP_AJ_G0019226.1 mouse_genomes_project 11 101745580 101746656 + MGP_AJ_P0032830 Fmnl1 protein_coding protein_coding MGP_AJ_T0028916.1 MGP_AJ_G0018239.1 mouse_genomes_project 11 48956318 48960298 + MGP_AJ_P0028916 Nhp2 protein_coding protein_coding MGP_AJ_T0028917.1 MGP_AJ_G0018239.1 mouse_genomes_project 11 48956354 48960013 + Nhp2 protein_coding retained_intron MGP_AJ_T0003256.1 MGP_AJ_G0003009.1 mouse_genomes_project 11 86576341 86584035 + Gm15893 antisense antisense MGP_AJ_T0032204.1 MGP_AJ_G0019063.1 mouse_genomes_project 11 97882565 97889939 - MGP_AJ_P0032204 Krt39 protein_coding protein_coding MGP_AJ_T0032205.1 MGP_AJ_G0019063.1 mouse_genomes_project 11 97883075 97889859 - MGP_AJ_P0032205 Krt39 protein_coding protein_coding MGP_AJ_T0032236.1 MGP_AJ_G0019093.1 mouse_genomes_project 11 98236491 98237274 - MGP_AJ_P0032236 Krtap4-16 protein_coding protein_coding MGP_AJ_T0032719.1 MGP_AJ_G0019204.1 mouse_genomes_project 11 100964928 100975564 - MGP_AJ_P0032719 Fam171a2 protein_coding protein_coding MGP_AJ_T0032720.1 MGP_AJ_G0019204.1 mouse_genomes_project 11 100966695 100967733 - Fam171a2 protein_coding processed_transcript MGP_AJ_T0032721.1 MGP_AJ_G0019204.1 mouse_genomes_project 11 100968188 100975476 - Fam171a2 protein_coding processed_transcript MGP_AJ_T0102253.1 MGP_AJ_G0039996.1 mouse_genomes_project 11 93064370 93065115 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0012543.1 MGP_AJ_G0010638.1 mouse_genomes_project 11 26330499 26331439 - processed_pseudogene processed_pseudogene MGP_AJ_T0030202.1 MGP_AJ_G0018562.1 mouse_genomes_project 11 68271815 68275177 + Arrb2 protein_coding retained_intron MGP_AJ_T0030203.1 MGP_AJ_G0018562.1 mouse_genomes_project 11 68271817 68279855 + MGP_AJ_P0030203 Arrb2 protein_coding protein_coding MGP_AJ_T0030204.1 MGP_AJ_G0018562.1 mouse_genomes_project 11 68271817 68279855 + MGP_AJ_P0030204 Arrb2 protein_coding protein_coding MGP_AJ_T0030205.1 MGP_AJ_G0018562.1 mouse_genomes_project 11 68271825 68280009 + MGP_AJ_P0030205 Arrb2 protein_coding protein_coding MGP_AJ_T0030206.1 MGP_AJ_G0018562.1 mouse_genomes_project 11 68271857 68276786 + MGP_AJ_P0030206 Arrb2 protein_coding protein_coding MGP_AJ_T0030207.1 MGP_AJ_G0018562.1 mouse_genomes_project 11 68271862 68277928 + MGP_AJ_P0030207 Arrb2 protein_coding nonsense_mediated_decay MGP_AJ_T0030208.1 MGP_AJ_G0018562.1 mouse_genomes_project 11 68271911 68279984 + MGP_AJ_P0030208 Arrb2 protein_coding protein_coding MGP_AJ_T0030209.1 MGP_AJ_G0018562.1 mouse_genomes_project 11 68275879 68279414 + Arrb2 protein_coding retained_intron MGP_AJ_T0030210.1 MGP_AJ_G0018562.1 mouse_genomes_project 11 68276083 68277903 + Arrb2 protein_coding retained_intron MGP_AJ_T0030211.1 MGP_AJ_G0018562.1 mouse_genomes_project 11 68276472 68278734 + Arrb2 protein_coding retained_intron MGP_AJ_T0030212.1 MGP_AJ_G0018562.1 mouse_genomes_project 11 68277762 68279409 + Arrb2 protein_coding retained_intron MGP_AJ_T0028058.1 MGP_AJ_G0018020.1 mouse_genomes_project 11 8789930 8878021 - MGP_AJ_P0028058 Ddc protein_coding protein_coding MGP_AJ_T0028059.1 MGP_AJ_G0018020.1 mouse_genomes_project 11 8789930 8877921 - MGP_AJ_P0028059 Ddc protein_coding protein_coding MGP_AJ_T0028060.1 MGP_AJ_G0018020.1 mouse_genomes_project 11 8789932 8798900 - Ddc protein_coding processed_transcript MGP_AJ_T0028061.1 MGP_AJ_G0018020.1 mouse_genomes_project 11 8789932 8870361 - MGP_AJ_P0028061 Ddc protein_coding protein_coding MGP_AJ_T0028062.1 MGP_AJ_G0018020.1 mouse_genomes_project 11 8795280 8812871 - Ddc protein_coding processed_transcript MGP_AJ_T0028063.1 MGP_AJ_G0018020.1 mouse_genomes_project 11 8821555 8842910 - Ddc protein_coding processed_transcript MGP_AJ_T0028064.1 MGP_AJ_G0018020.1 mouse_genomes_project 11 8823217 8870322 - MGP_AJ_P0028064 Ddc protein_coding protein_coding MGP_AJ_T0028065.1 MGP_AJ_G0018020.1 mouse_genomes_project 11 8839800 8870354 - Ddc protein_coding processed_transcript MGP_AJ_T0028066.1 MGP_AJ_G0018020.1 mouse_genomes_project 11 8852127 8859519 - Ddc protein_coding processed_transcript MGP_AJ_T0028067.1 MGP_AJ_G0018020.1 mouse_genomes_project 11 8854066 8870351 - Ddc protein_coding processed_transcript MGP_AJ_T0028033.1 MGP_AJ_G0018014.1 mouse_genomes_project 11 6163596 6196994 + Abca13 protein_coding processed_transcript MGP_AJ_T0028034.1 MGP_AJ_G0018014.1 mouse_genomes_project 11 6163596 6662681 + MGP_AJ_P0028034 Abca13 protein_coding protein_coding MGP_AJ_T0028035.1 MGP_AJ_G0018014.1 mouse_genomes_project 11 6165106 6230918 + MGP_AJ_P0028035 Abca13 protein_coding protein_coding MGP_AJ_T0028036.1 MGP_AJ_G0018014.1 mouse_genomes_project 11 6224475 6661800 + MGP_AJ_P0028036 Abca13 protein_coding unknown_likely_coding MGP_AJ_T0006341.1 MGP_AJ_G0005285.1 mouse_genomes_project 11 105601266 105602292 - Gm11707 lincRNA lincRNA MGP_AJ_T0031949.1 MGP_AJ_G0018996.1 mouse_genomes_project 11 95629728 95643418 + MGP_AJ_P0031949 Mrpl45 protein_coding protein_coding MGP_AJ_T0031950.1 MGP_AJ_G0018996.1 mouse_genomes_project 11 95629920 95635525 + MGP_AJ_P0031950 Mrpl45 protein_coding protein_coding MGP_AJ_T0003114.1 MGP_AJ_G0002893.1 mouse_genomes_project 11 2885323 2886768 + Gm11967 antisense antisense MGP_AJ_T0012620.1 MGP_AJ_G0010715.1 mouse_genomes_project 11 53044686 53045156 + processed_pseudogene processed_pseudogene MGP_AJ_T0031930.1 MGP_AJ_G0018995.1 mouse_genomes_project 11 95517356 95594470 - MGP_AJ_P0031930 Npepps protein_coding protein_coding MGP_AJ_T0031931.1 MGP_AJ_G0018995.1 mouse_genomes_project 11 95517356 95594470 - MGP_AJ_P0031931 Npepps protein_coding protein_coding MGP_AJ_T0031932.1 MGP_AJ_G0018995.1 mouse_genomes_project 11 95517358 95594470 - MGP_AJ_P0031932 Npepps protein_coding protein_coding MGP_AJ_T0031933.1 MGP_AJ_G0018995.1 mouse_genomes_project 11 95518421 95523978 - Npepps protein_coding retained_intron MGP_AJ_T0031934.1 MGP_AJ_G0018995.1 mouse_genomes_project 11 95518446 95555172 - Npepps protein_coding retained_intron MGP_AJ_T0031935.1 MGP_AJ_G0018995.1 mouse_genomes_project 11 95518446 95594420 - MGP_AJ_P0031935 Npepps protein_coding protein_coding MGP_AJ_T0031936.1 MGP_AJ_G0018995.1 mouse_genomes_project 11 95518671 95524810 - Npepps protein_coding retained_intron MGP_AJ_T0031937.1 MGP_AJ_G0018995.1 mouse_genomes_project 11 95525051 95536653 - Npepps protein_coding retained_intron MGP_AJ_T0031938.1 MGP_AJ_G0018995.1 mouse_genomes_project 11 95534994 95543904 - Npepps protein_coding retained_intron MGP_AJ_T0031939.1 MGP_AJ_G0018995.1 mouse_genomes_project 11 95536282 95538462 - Npepps protein_coding retained_intron MGP_AJ_T0031940.1 MGP_AJ_G0018995.1 mouse_genomes_project 11 95541291 95547835 - Npepps protein_coding retained_intron MGP_AJ_T0031941.1 MGP_AJ_G0018995.1 mouse_genomes_project 11 95543614 95555184 - Npepps protein_coding processed_transcript MGP_AJ_T0031942.1 MGP_AJ_G0018995.1 mouse_genomes_project 11 95543619 95556089 - MGP_AJ_P0031942 Npepps protein_coding protein_coding MGP_AJ_T0031943.1 MGP_AJ_G0018995.1 mouse_genomes_project 11 95547807 95580805 - MGP_AJ_P0031943 Npepps protein_coding nonsense_mediated_decay MGP_AJ_T0031944.1 MGP_AJ_G0018995.1 mouse_genomes_project 11 95555266 95556452 - Npepps protein_coding retained_intron MGP_AJ_T0031945.1 MGP_AJ_G0018995.1 mouse_genomes_project 11 95555939 95594396 - MGP_AJ_P0031945 Npepps protein_coding protein_coding MGP_AJ_T0031946.1 MGP_AJ_G0018995.1 mouse_genomes_project 11 95557732 95594458 - MGP_AJ_P0031946 Npepps protein_coding nonsense_mediated_decay MGP_AJ_T0031947.1 MGP_AJ_G0018995.1 mouse_genomes_project 11 95570488 95594470 - Npepps protein_coding retained_intron MGP_AJ_T0031948.1 MGP_AJ_G0018995.1 mouse_genomes_project 11 95571159 95580797 - MGP_AJ_P0031948 Npepps protein_coding nonsense_mediated_decay MGP_AJ_T0030621.1 MGP_AJ_G0018671.1 mouse_genomes_project 11 73088480 73091374 - MGP_AJ_P0030621 Ovca2 protein_coding protein_coding MGP_AJ_T0030624.1 MGP_AJ_G0018671.1 mouse_genomes_project 11 73090339 73091326 - Ovca2 protein_coding processed_transcript MGP_AJ_T0034239.1 MGP_AJ_G0019521.1 mouse_genomes_project 11 120736718 120743260 + Ptchd3 protein_coding retained_intron MGP_AJ_T0034240.1 MGP_AJ_G0019521.1 mouse_genomes_project 11 120736718 120749895 + MGP_AJ_P0034240 Ptchd3 protein_coding protein_coding MGP_AJ_T0031739.1 MGP_AJ_G0018942.1 mouse_genomes_project 11 93268389 93285786 + MGP_AJ_P0031739 Samd14 protein_coding protein_coding MGP_AJ_T0031740.1 MGP_AJ_G0018942.1 mouse_genomes_project 11 93268392 93281320 + Samd14 protein_coding processed_transcript MGP_AJ_T0031741.1 MGP_AJ_G0018942.1 mouse_genomes_project 11 93269319 93279777 + MGP_AJ_P0031741 Samd14 protein_coding protein_coding MGP_AJ_T0009723.1 MGP_AJ_G0007845.1 mouse_genomes_project 11 77735573 77735685 + Mir365-2 miRNA miRNA MGP_AJ_T0012470.1 MGP_AJ_G0010565.1 mouse_genomes_project 11 3419464 3419752 + processed_pseudogene processed_pseudogene MGP_AJ_T0009740.1 MGP_AJ_G0007862.1 mouse_genomes_project 11 95999168 95999239 + Mir6927 miRNA miRNA MGP_AJ_T0006265.1 MGP_AJ_G0005232.1 mouse_genomes_project 11 68466017 68468552 - Gm12315 lincRNA lincRNA MGP_AJ_T0028327.1 MGP_AJ_G0018080.1 mouse_genomes_project 11 26519295 26526300 + MGP_AJ_P0028327 Mtif2 protein_coding protein_coding MGP_AJ_T0028328.1 MGP_AJ_G0018080.1 mouse_genomes_project 11 26519323 26526819 + MGP_AJ_P0028328 Mtif2 protein_coding protein_coding MGP_AJ_T0028329.1 MGP_AJ_G0018080.1 mouse_genomes_project 11 26519334 26523157 + Mtif2 protein_coding processed_transcript MGP_AJ_T0028330.1 MGP_AJ_G0018080.1 mouse_genomes_project 11 26519335 26538711 + MGP_AJ_P0028330 Mtif2 protein_coding protein_coding MGP_AJ_T0028331.1 MGP_AJ_G0018080.1 mouse_genomes_project 11 26519337 26533621 + MGP_AJ_P0028331 Mtif2 protein_coding protein_coding MGP_AJ_T0028332.1 MGP_AJ_G0018080.1 mouse_genomes_project 11 26519344 26538708 + MGP_AJ_P0028332 Mtif2 protein_coding protein_coding MGP_AJ_T0028333.1 MGP_AJ_G0018080.1 mouse_genomes_project 11 26526192 26533728 + MGP_AJ_P0028333 Mtif2 protein_coding protein_coding MGP_AJ_T0028334.1 MGP_AJ_G0018080.1 mouse_genomes_project 11 26533426 26535487 + Mtif2 protein_coding processed_transcript MGP_AJ_T0012783.1 MGP_AJ_G0010878.1 mouse_genomes_project 11 114558168 114558382 + processed_pseudogene processed_pseudogene MGP_AJ_T0032797.1 MGP_AJ_G0019222.1 mouse_genomes_project 11 101620420 101644199 - MGP_AJ_P0032797 Plcd3 protein_coding protein_coding MGP_AJ_T0032798.1 MGP_AJ_G0019222.1 mouse_genomes_project 11 101620420 101628401 - MGP_AJ_P0032798 Plcd3 protein_coding protein_coding MGP_AJ_T0032799.1 MGP_AJ_G0019222.1 mouse_genomes_project 11 101620701 101621867 - Plcd3 protein_coding processed_transcript MGP_AJ_T0032800.1 MGP_AJ_G0019222.1 mouse_genomes_project 11 101630704 101644159 - Plcd3 protein_coding processed_transcript MGP_AJ_T0032801.1 MGP_AJ_G0019222.1 mouse_genomes_project 11 101633144 101644132 - Plcd3 protein_coding processed_transcript MGP_AJ_T0100591.1 MGP_AJ_G0038557.1 mouse_genomes_project 11 52970493 52970633 + Gm22884 snoRNA snoRNA MGP_AJ_T0030552.1 MGP_AJ_G0018654.1 mouse_genomes_project 11 72124376 72125468 - MGP_AJ_P0030552 Olfr43 protein_coding protein_coding MGP_AJ_T0030553.1 MGP_AJ_G0018654.1 mouse_genomes_project 11 72124776 72129308 - MGP_AJ_P0030553 Olfr43 protein_coding protein_coding MGP_AJ_T0030554.1 MGP_AJ_G0018654.1 mouse_genomes_project 11 72125071 72129515 - MGP_AJ_P0030554 Olfr43 protein_coding protein_coding MGP_AJ_T0030555.1 MGP_AJ_G0018654.1 mouse_genomes_project 11 72125178 72129567 - MGP_AJ_P0030555 Olfr43 protein_coding protein_coding MGP_AJ_T0028178.1 MGP_AJ_G0018048.1 mouse_genomes_project 11 18907675 18914527 - MGP_AJ_P0028178 Otx1 protein_coding protein_coding MGP_AJ_T0028179.1 MGP_AJ_G0018048.1 mouse_genomes_project 11 18907680 18914622 - Otx1 protein_coding retained_intron MGP_AJ_T0028180.1 MGP_AJ_G0018048.1 mouse_genomes_project 11 18909769 18915795 - MGP_AJ_P0028180 Otx1 protein_coding protein_coding MGP_AJ_T0033416.1 MGP_AJ_G0019361.1 mouse_genomes_project 11 114335154 114348286 - MGP_AJ_P0033416 Sumo2 protein_coding protein_coding MGP_AJ_T0033417.1 MGP_AJ_G0019361.1 mouse_genomes_project 11 114342105 114348186 - Sumo2 protein_coding retained_intron MGP_AJ_T0033418.1 MGP_AJ_G0019361.1 mouse_genomes_project 11 114346388 114348199 - Sumo2 protein_coding retained_intron MGP_AJ_T0033161.1 MGP_AJ_G0019300.1 mouse_genomes_project 11 108083498 108089914 + MGP_AJ_P0033161 9930022D16Rik protein_coding protein_coding MGP_AJ_T0009721.1 MGP_AJ_G0007843.1 mouse_genomes_project 11 76137613 76137674 + Mir7653 miRNA miRNA MGP_AJ_T0012703.1 MGP_AJ_G0010798.1 mouse_genomes_project 11 81936136 81936763 + processed_pseudogene processed_pseudogene MGP_AJ_T0028126.1 MGP_AJ_G0018035.1 mouse_genomes_project 11 16818233 16924474 + MGP_AJ_P0028126 Spred2 protein_coding protein_coding MGP_AJ_T0028127.1 MGP_AJ_G0018035.1 mouse_genomes_project 11 16818300 16919857 + MGP_AJ_P0028127 Spred2 protein_coding protein_coding MGP_AJ_T0028128.1 MGP_AJ_G0018035.1 mouse_genomes_project 11 16849901 16915436 + MGP_AJ_P0028128 Spred2 protein_coding protein_coding MGP_AJ_T0012643.1 MGP_AJ_G0010738.1 mouse_genomes_project 11 59693731 59694116 - processed_pseudogene processed_pseudogene MGP_AJ_T0006191.1 MGP_AJ_G0005170.1 mouse_genomes_project 11 20078579 20092874 + 1700061J23Rik lincRNA lincRNA MGP_AJ_T0009704.1 MGP_AJ_G0007826.1 mouse_genomes_project 11 68066571 68066655 + Mir497 miRNA miRNA MGP_AJ_T0006216.1 MGP_AJ_G0005189.1 mouse_genomes_project 11 30156866 30160292 + lincRNA lincRNA MGP_AJ_T0102249.1 MGP_AJ_G0039992.1 mouse_genomes_project 11 81820939 81821816 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0028767.1 MGP_AJ_G0018204.1 mouse_genomes_project 11 46928998 46980961 - MGP_AJ_P0028767 Cnot6 protein_coding protein_coding MGP_AJ_T0028768.1 MGP_AJ_G0018204.1 mouse_genomes_project 11 46932193 46963646 - Cnot6 protein_coding processed_transcript MGP_AJ_T0028769.1 MGP_AJ_G0018204.1 mouse_genomes_project 11 46932208 46980948 - MGP_AJ_P0028769 Cnot6 protein_coding protein_coding MGP_AJ_T0028770.1 MGP_AJ_G0018204.1 mouse_genomes_project 11 46934879 46941453 - Cnot6 protein_coding processed_transcript MGP_AJ_T0028771.1 MGP_AJ_G0018204.1 mouse_genomes_project 11 46942204 46943777 - Cnot6 protein_coding processed_transcript MGP_AJ_T0017249.1 MGP_AJ_G0015177.1 mouse_genomes_project 11 95965943 95982492 - Gm11613 processed_transcript processed_transcript MGP_AJ_T0028085.1 MGP_AJ_G0018023.1 mouse_genomes_project 11 13165699 13193921 + MGP_AJ_P0028085 Vstm2a protein_coding protein_coding MGP_AJ_T0028086.1 MGP_AJ_G0018023.1 mouse_genomes_project 11 13165778 13334634 + MGP_AJ_P0028086 Vstm2a protein_coding protein_coding MGP_AJ_T0028087.1 MGP_AJ_G0018023.1 mouse_genomes_project 11 13166016 13191821 + MGP_AJ_P0028087 Vstm2a protein_coding unknown_likely_coding MGP_AJ_T0031195.1 MGP_AJ_G0018806.1 mouse_genomes_project 11 81146044 81151764 + MGP_AJ_P0031195 Slfn2 protein_coding protein_coding MGP_AJ_T0032802.1 MGP_AJ_G0019223.1 mouse_genomes_project 11 101644222 101654726 + MGP_AJ_P0032802 Acbd4 protein_coding protein_coding MGP_AJ_T0032803.1 MGP_AJ_G0019223.1 mouse_genomes_project 11 101644222 101654729 + MGP_AJ_P0032803 Acbd4 protein_coding nonsense_mediated_decay MGP_AJ_T0032804.1 MGP_AJ_G0019223.1 mouse_genomes_project 11 101644226 101646547 + Acbd4 protein_coding processed_transcript MGP_AJ_T0032805.1 MGP_AJ_G0019223.1 mouse_genomes_project 11 101644226 101647923 + MGP_AJ_P0032805 Acbd4 protein_coding protein_coding MGP_AJ_T0032806.1 MGP_AJ_G0019223.1 mouse_genomes_project 11 101644228 101654728 + MGP_AJ_P0032806 Acbd4 protein_coding protein_coding MGP_AJ_T0032807.1 MGP_AJ_G0019223.1 mouse_genomes_project 11 101644249 101645911 + Acbd4 protein_coding retained_intron MGP_AJ_T0032808.1 MGP_AJ_G0019223.1 mouse_genomes_project 11 101644252 101646705 + MGP_AJ_P0032808 Acbd4 protein_coding protein_coding MGP_AJ_T0032809.1 MGP_AJ_G0019223.1 mouse_genomes_project 11 101644266 101645749 + Acbd4 protein_coding retained_intron MGP_AJ_T0032810.1 MGP_AJ_G0019223.1 mouse_genomes_project 11 101645546 101647997 + MGP_AJ_P0032810 Acbd4 protein_coding nonsense_mediated_decay MGP_AJ_T0032811.1 MGP_AJ_G0019223.1 mouse_genomes_project 11 101645599 101647982 + Acbd4 protein_coding processed_transcript MGP_AJ_T0032812.1 MGP_AJ_G0019223.1 mouse_genomes_project 11 101645601 101647377 + MGP_AJ_P0032812 Acbd4 protein_coding protein_coding MGP_AJ_T0032813.1 MGP_AJ_G0019223.1 mouse_genomes_project 11 101645633 101646624 + Acbd4 protein_coding retained_intron MGP_AJ_T0032814.1 MGP_AJ_G0019223.1 mouse_genomes_project 11 101645777 101647013 + Acbd4 protein_coding retained_intron MGP_AJ_T0032815.1 MGP_AJ_G0019223.1 mouse_genomes_project 11 101647235 101654482 + Acbd4 protein_coding retained_intron MGP_AJ_T0032816.1 MGP_AJ_G0019223.1 mouse_genomes_project 11 101648713 101654268 + Acbd4 protein_coding processed_transcript MGP_AJ_T0032817.1 MGP_AJ_G0019223.1 mouse_genomes_project 11 101648734 101654726 + Acbd4 protein_coding processed_transcript MGP_AJ_T0029790.1 MGP_AJ_G0018473.1 mouse_genomes_project 11 66472526 66480232 + Myh10 protein_coding processed_transcript MGP_AJ_T0029791.1 MGP_AJ_G0018473.1 mouse_genomes_project 11 66472882 66601863 + MGP_AJ_P0029791 Myh10 protein_coding protein_coding MGP_AJ_T0029792.1 MGP_AJ_G0018473.1 mouse_genomes_project 11 66473045 66480391 + Myh10 protein_coding processed_transcript MGP_AJ_T0029793.1 MGP_AJ_G0018473.1 mouse_genomes_project 11 66473048 66528359 + MGP_AJ_P0029793 Myh10 protein_coding protein_coding MGP_AJ_T0029794.1 MGP_AJ_G0018473.1 mouse_genomes_project 11 66473079 66601843 + MGP_AJ_P0029794 Myh10 protein_coding protein_coding MGP_AJ_T0029795.1 MGP_AJ_G0018473.1 mouse_genomes_project 11 66473121 66551570 + Myh10 protein_coding retained_intron MGP_AJ_T0029796.1 MGP_AJ_G0018473.1 mouse_genomes_project 11 66473283 66601855 + MGP_AJ_P0029796 Myh10 protein_coding protein_coding MGP_AJ_T0029797.1 MGP_AJ_G0018473.1 mouse_genomes_project 11 66565337 66571948 + Myh10 protein_coding processed_transcript MGP_AJ_T0029798.1 MGP_AJ_G0018473.1 mouse_genomes_project 11 66595911 66597503 + Myh10 protein_coding processed_transcript MGP_AJ_T0029799.1 MGP_AJ_G0018473.1 mouse_genomes_project 11 66598852 66601775 + Myh10 protein_coding processed_transcript MGP_AJ_T0032225.1 MGP_AJ_G0019082.1 mouse_genomes_project 11 98068123 98068276 - MGP_AJ_P0032225 Gm14190 protein_coding protein_coding MGP_AJ_T0027984.1 MGP_AJ_G0018001.1 mouse_genomes_project 11 3594602 3605010 - MGP_AJ_P0027984 Tbrg4 protein_coding nonsense_mediated_decay MGP_AJ_T0027985.1 MGP_AJ_G0018001.1 mouse_genomes_project 11 3594603 3605034 - MGP_AJ_P0027985 Tbrg4 protein_coding protein_coding MGP_AJ_T0027986.1 MGP_AJ_G0018001.1 mouse_genomes_project 11 3595427 3605010 - MGP_AJ_P0027986 Tbrg4 protein_coding protein_coding MGP_AJ_T0027987.1 MGP_AJ_G0018001.1 mouse_genomes_project 11 3595429 3605010 - MGP_AJ_P0027987 Tbrg4 protein_coding nonsense_mediated_decay MGP_AJ_T0027988.1 MGP_AJ_G0018001.1 mouse_genomes_project 11 3596258 3597034 - Tbrg4 protein_coding retained_intron MGP_AJ_T0027989.1 MGP_AJ_G0018001.1 mouse_genomes_project 11 3598561 3599921 - Tbrg4 protein_coding processed_transcript MGP_AJ_T0027990.1 MGP_AJ_G0018001.1 mouse_genomes_project 11 3598591 3599451 - Tbrg4 protein_coding retained_intron MGP_AJ_T0027991.1 MGP_AJ_G0018001.1 mouse_genomes_project 11 3599007 3600257 - Tbrg4 protein_coding retained_intron MGP_AJ_T0027992.1 MGP_AJ_G0018001.1 mouse_genomes_project 11 3599185 3600071 - Tbrg4 protein_coding processed_transcript MGP_AJ_T0027993.1 MGP_AJ_G0018001.1 mouse_genomes_project 11 3600002 3605034 - MGP_AJ_P0027993 Tbrg4 protein_coding protein_coding MGP_AJ_T0027994.1 MGP_AJ_G0018001.1 mouse_genomes_project 11 3602205 3604989 - Tbrg4 protein_coding processed_transcript MGP_AJ_T0027995.1 MGP_AJ_G0018001.1 mouse_genomes_project 11 3602889 3604470 - MGP_AJ_P0027995 Tbrg4 protein_coding protein_coding MGP_AJ_T0032922.1 MGP_AJ_G0019249.1 mouse_genomes_project 11 103707892 103721877 + MGP_AJ_P0032922 Mettl2 protein_coding protein_coding MGP_AJ_T0032923.1 MGP_AJ_G0019249.1 mouse_genomes_project 11 103707946 103721877 + Mettl2 protein_coding processed_transcript MGP_AJ_T0032924.1 MGP_AJ_G0019249.1 mouse_genomes_project 11 103713919 103720464 + Mettl2 protein_coding processed_transcript MGP_AJ_T0032925.1 MGP_AJ_G0019249.1 mouse_genomes_project 11 103713930 103717127 + Mettl2 protein_coding processed_transcript MGP_AJ_T0032926.1 MGP_AJ_G0019249.1 mouse_genomes_project 11 103719033 103721877 + Mettl2 protein_coding processed_transcript MGP_AJ_T0029055.1 MGP_AJ_G0018276.1 mouse_genomes_project 11 51288616 51316620 - MGP_AJ_P0029055 Slc22a5 protein_coding protein_coding MGP_AJ_T0028705.1 MGP_AJ_G0018179.1 mouse_genomes_project 11 46034467 46044762 - MGP_AJ_P0028705 protein_coding protein_coding MGP_AJ_T0034218.1 MGP_AJ_G0019514.1 mouse_genomes_project 11 120269953 120302000 - MGP_AJ_P0034218 Rab40b protein_coding protein_coding MGP_AJ_T0034219.1 MGP_AJ_G0019514.1 mouse_genomes_project 11 120271830 120301814 - Rab40b protein_coding processed_transcript MGP_AJ_T0034220.1 MGP_AJ_G0019514.1 mouse_genomes_project 11 120273419 120301970 - Rab40b protein_coding processed_transcript MGP_AJ_T0034221.1 MGP_AJ_G0019514.1 mouse_genomes_project 11 120273438 120301979 - Rab40b protein_coding processed_transcript MGP_AJ_T0030628.1 MGP_AJ_G0018673.1 mouse_genomes_project 11 73108146 73183170 + MGP_AJ_P0030628 Rtn4rl1 protein_coding protein_coding MGP_AJ_T0003341.1 MGP_AJ_G0003077.1 mouse_genomes_project 11 114270085 114271495 - Gm11695 antisense antisense MGP_AJ_T0098821.1 MGP_AJ_G0036805.1 mouse_genomes_project 11 115001873 115002000 - Gm26413 scaRNA scaRNA MGP_AJ_T0100636.1 MGP_AJ_G0038602.1 mouse_genomes_project 11 115529952 115530026 + Snord1a snoRNA snoRNA MGP_AJ_T0012459.1 MGP_AJ_G0010554.1 mouse_genomes_project 11 625091 625987 - processed_pseudogene processed_pseudogene MGP_AJ_T0030835.1 MGP_AJ_G0018718.1 mouse_genomes_project 11 75484013 75557325 - MGP_AJ_P0030835 Taok1 protein_coding unknown_likely_coding MGP_AJ_T0028246.1 MGP_AJ_G0018063.1 mouse_genomes_project 11 20576531 20596003 - MGP_AJ_P0028246 Pex13 protein_coding protein_coding MGP_AJ_T0028247.1 MGP_AJ_G0018063.1 mouse_genomes_project 11 20579508 20595896 - MGP_AJ_P0028247 Pex13 protein_coding nonsense_mediated_decay MGP_AJ_T0028248.1 MGP_AJ_G0018063.1 mouse_genomes_project 11 20585876 20595886 - Pex13 protein_coding processed_transcript MGP_AJ_T0028249.1 MGP_AJ_G0018063.1 mouse_genomes_project 11 20586129 20595717 - Pex13 protein_coding processed_transcript MGP_AJ_T0012656.1 MGP_AJ_G0010751.1 mouse_genomes_project 11 67445978 67446367 - processed_pseudogene processed_pseudogene MGP_AJ_T0030955.1 MGP_AJ_G0018740.1 mouse_genomes_project 11 76264367 76285718 + MGP_AJ_P0030955 Spag5 protein_coding protein_coding MGP_AJ_T0030956.1 MGP_AJ_G0018740.1 mouse_genomes_project 11 76264462 76278431 + Spag5 protein_coding retained_intron MGP_AJ_T0030957.1 MGP_AJ_G0018740.1 mouse_genomes_project 11 76264493 76278104 + Spag5 protein_coding retained_intron MGP_AJ_T0030958.1 MGP_AJ_G0018740.1 mouse_genomes_project 11 76276355 76277325 + Spag5 protein_coding retained_intron MGP_AJ_T0030959.1 MGP_AJ_G0018740.1 mouse_genomes_project 11 76278597 76279302 + Spag5 protein_coding retained_intron MGP_AJ_T0030960.1 MGP_AJ_G0018740.1 mouse_genomes_project 11 76279160 76283159 + Spag5 protein_coding retained_intron MGP_AJ_T0030961.1 MGP_AJ_G0018740.1 mouse_genomes_project 11 76281222 76283636 + Spag5 protein_coding processed_transcript MGP_AJ_T0030962.1 MGP_AJ_G0018740.1 mouse_genomes_project 11 76283186 76284001 + Spag5 protein_coding retained_intron MGP_AJ_T0012639.1 MGP_AJ_G0010734.1 mouse_genomes_project 11 58501971 58502536 - processed_pseudogene processed_pseudogene MGP_AJ_T0028570.1 MGP_AJ_G0018142.1 mouse_genomes_project 11 40297672 40307365 + Atp10b protein_coding processed_transcript MGP_AJ_T0028571.1 MGP_AJ_G0018142.1 mouse_genomes_project 11 40299383 40409627 + MGP_AJ_P0028571 Atp10b protein_coding protein_coding MGP_AJ_T0028572.1 MGP_AJ_G0018142.1 mouse_genomes_project 11 40303754 40348946 + Atp10b protein_coding processed_transcript MGP_AJ_T0003151.1 MGP_AJ_G0002923.1 mouse_genomes_project 11 47404411 47405334 - Gm12195 antisense antisense MGP_AJ_T0030108.1 MGP_AJ_G0018543.1 mouse_genomes_project 11 67816147 67819862 + MGP_AJ_P0030108 Gabarap protein_coding protein_coding MGP_AJ_T0030109.1 MGP_AJ_G0018543.1 mouse_genomes_project 11 67816643 67819851 + MGP_AJ_P0030109 Gabarap protein_coding protein_coding MGP_AJ_T0030110.1 MGP_AJ_G0018543.1 mouse_genomes_project 11 67816688 67819846 + Gabarap protein_coding retained_intron MGP_AJ_T0030111.1 MGP_AJ_G0018543.1 mouse_genomes_project 11 67816811 67817606 + Gabarap protein_coding processed_transcript MGP_AJ_T0030548.1 MGP_AJ_G0018652.1 mouse_genomes_project 11 72067533 72068545 + MGP_AJ_P0030548 Olfr402 protein_coding protein_coding MGP_AJ_T0027749.1 MGP_AJ_G0017948.1 mouse_genomes_project 11 1078338 1084298 + MGP_AJ_P0027749 Rnf215 protein_coding protein_coding MGP_AJ_T0027750.1 MGP_AJ_G0017948.1 mouse_genomes_project 11 1078350 1080505 + MGP_AJ_P0027750 Rnf215 protein_coding protein_coding MGP_AJ_T0027751.1 MGP_AJ_G0017948.1 mouse_genomes_project 11 1078418 1080354 + MGP_AJ_P0027751 Rnf215 protein_coding protein_coding MGP_AJ_T0027752.1 MGP_AJ_G0017948.1 mouse_genomes_project 11 1078638 1080292 + Rnf215 protein_coding processed_transcript MGP_AJ_T0030528.1 MGP_AJ_G0018639.1 mouse_genomes_project 11 71703478 71707680 - MGP_AJ_P0030528 Olfr389 protein_coding protein_coding MGP_AJ_T0030529.1 MGP_AJ_G0018639.1 mouse_genomes_project 11 71703744 71707626 - MGP_AJ_P0030529 Olfr389 protein_coding protein_coding MGP_AJ_T0032227.1 MGP_AJ_G0019084.1 mouse_genomes_project 11 98145996 98147341 - MGP_AJ_P0032227 protein_coding protein_coding MGP_AJ_T0030369.1 MGP_AJ_G0018591.1 mouse_genomes_project 11 68876433 68882001 + MGP_AJ_P0030369 Mis12 protein_coding protein_coding MGP_AJ_T0030370.1 MGP_AJ_G0018591.1 mouse_genomes_project 11 68876433 68884194 + MGP_AJ_P0030370 Mis12 protein_coding protein_coding MGP_AJ_T0030371.1 MGP_AJ_G0018591.1 mouse_genomes_project 11 68876433 68882889 + MGP_AJ_P0030371 Mis12 protein_coding protein_coding MGP_AJ_T0030372.1 MGP_AJ_G0018591.1 mouse_genomes_project 11 68876681 68881990 + MGP_AJ_P0030372 Mis12 protein_coding protein_coding MGP_AJ_T0030373.1 MGP_AJ_G0018591.1 mouse_genomes_project 11 68876684 68881981 + MGP_AJ_P0030373 Mis12 protein_coding protein_coding MGP_AJ_T0030374.1 MGP_AJ_G0018591.1 mouse_genomes_project 11 68876713 68882018 + MGP_AJ_P0030374 Mis12 protein_coding protein_coding MGP_AJ_T0009702.1 MGP_AJ_G0007824.1 mouse_genomes_project 11 67836979 67837068 + Mir324 miRNA miRNA MGP_AJ_T0100630.1 MGP_AJ_G0038596.1 mouse_genomes_project 11 105127538 105127608 + Snord104 snoRNA snoRNA MGP_AJ_T0011299.1 MGP_AJ_G0009421.1 mouse_genomes_project 11 48601319 48601574 + Gm25082 misc_RNA misc_RNA MGP_AJ_T0028154.1 MGP_AJ_G0018043.1 mouse_genomes_project 11 18012511 18064781 + Peli1 protein_coding retained_intron MGP_AJ_T0028155.1 MGP_AJ_G0018043.1 mouse_genomes_project 11 18012511 18072378 + MGP_AJ_P0028155 Peli1 protein_coding protein_coding MGP_AJ_T0028156.1 MGP_AJ_G0018043.1 mouse_genomes_project 11 18013338 18071457 + Peli1 protein_coding retained_intron MGP_AJ_T0028157.1 MGP_AJ_G0018043.1 mouse_genomes_project 11 18058013 18072378 + MGP_AJ_P0028157 Peli1 protein_coding protein_coding MGP_AJ_T0009730.1 MGP_AJ_G0007852.1 mouse_genomes_project 11 85942399 85942463 + Mir142 miRNA miRNA MGP_AJ_T0027965.1 MGP_AJ_G0017997.1 mouse_genomes_project 11 3432535 3441401 - MGP_AJ_P0027965 Purb protein_coding protein_coding MGP_AJ_T0009778.1 MGP_AJ_G0007900.1 mouse_genomes_project 11 120300893 120300953 - Mir7236 miRNA miRNA MGP_AJ_T0017235.1 MGP_AJ_G0015169.1 mouse_genomes_project 11 92907388 92917634 + Gm11542 processed_transcript processed_transcript MGP_AJ_T0017287.1 MGP_AJ_G0015197.1 mouse_genomes_project 11 118451528 118471963 + Gm11762 processed_transcript processed_transcript MGP_AJ_T0033594.1 MGP_AJ_G0019389.1 mouse_genomes_project 11 115060059 115078625 - MGP_AJ_P0033594 Evpl protein_coding protein_coding MGP_AJ_T0012649.1 MGP_AJ_G0010744.1 mouse_genomes_project 11 61562249 61563531 - processed_pseudogene processed_pseudogene MGP_AJ_T0012557.1 MGP_AJ_G0010652.1 mouse_genomes_project 11 28037402 28038006 - processed_pseudogene processed_pseudogene MGP_AJ_T0030464.1 MGP_AJ_G0018615.1 mouse_genomes_project 11 70862660 70894504 + MGP_AJ_P0030464 Atp2a3 protein_coding protein_coding MGP_AJ_T0030465.1 MGP_AJ_G0018615.1 mouse_genomes_project 11 70862660 70894504 + MGP_AJ_P0030465 Atp2a3 protein_coding protein_coding MGP_AJ_T0030466.1 MGP_AJ_G0018615.1 mouse_genomes_project 11 70862660 70894504 + MGP_AJ_P0030466 Atp2a3 protein_coding protein_coding MGP_AJ_T0030467.1 MGP_AJ_G0018615.1 mouse_genomes_project 11 70862660 70894505 + MGP_AJ_P0030467 Atp2a3 protein_coding protein_coding MGP_AJ_T0030468.1 MGP_AJ_G0018615.1 mouse_genomes_project 11 70862660 70894505 + MGP_AJ_P0030468 Atp2a3 protein_coding protein_coding MGP_AJ_T0030469.1 MGP_AJ_G0018615.1 mouse_genomes_project 11 70862781 70872233 + Atp2a3 protein_coding retained_intron MGP_AJ_T0030470.1 MGP_AJ_G0018615.1 mouse_genomes_project 11 70883557 70885006 + Atp2a3 protein_coding processed_transcript MGP_AJ_T0032837.1 MGP_AJ_G0019229.1 mouse_genomes_project 11 101768116 101794981 - MGP_AJ_P0032837 Map3k14 protein_coding unknown_likely_coding MGP_AJ_T0032838.1 MGP_AJ_G0019229.1 mouse_genomes_project 11 101768124 101817407 - MGP_AJ_P0032838 Map3k14 protein_coding protein_coding MGP_AJ_T0032839.1 MGP_AJ_G0019229.1 mouse_genomes_project 11 101769167 101770217 - Map3k14 protein_coding processed_transcript MGP_AJ_T0032840.1 MGP_AJ_G0019229.1 mouse_genomes_project 11 101786953 101792208 - Map3k14 protein_coding processed_transcript MGP_AJ_T0032841.1 MGP_AJ_G0019229.1 mouse_genomes_project 11 101789257 101790058 - Map3k14 protein_coding processed_transcript MGP_AJ_T0101951.1 MGP_AJ_G0039793.1 mouse_genomes_project 11 81078778 81107584 - transcribed_unprocessed_pseudogene processed_transcript MGP_AJ_T0101952.1 MGP_AJ_G0039793.1 mouse_genomes_project 11 81079506 81099111 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_AJ_T0012795.1 MGP_AJ_G0010890.1 mouse_genomes_project 11 120321863 120322198 - processed_pseudogene processed_pseudogene MGP_AJ_T0012723.1 MGP_AJ_G0010818.1 mouse_genomes_project 11 91882587 91883798 + processed_pseudogene processed_pseudogene MGP_AJ_T0027696.1 MGP_AJ_G0017935.1 mouse_genomes_project 11 574369 618034 + MGP_AJ_P0027696 Morc2a protein_coding protein_coding MGP_AJ_T0027697.1 MGP_AJ_G0017935.1 mouse_genomes_project 11 574634 594280 + MGP_AJ_P0027697 Morc2a protein_coding protein_coding MGP_AJ_T0027698.1 MGP_AJ_G0017935.1 mouse_genomes_project 11 575128 618141 + MGP_AJ_P0027698 Morc2a protein_coding protein_coding MGP_AJ_T0027699.1 MGP_AJ_G0017935.1 mouse_genomes_project 11 575255 618654 + MGP_AJ_P0027699 Morc2a protein_coding unknown_likely_coding MGP_AJ_T0027700.1 MGP_AJ_G0017935.1 mouse_genomes_project 11 604776 611572 + Morc2a protein_coding processed_transcript MGP_AJ_T0027701.1 MGP_AJ_G0017935.1 mouse_genomes_project 11 605136 605993 + Morc2a protein_coding processed_transcript MGP_AJ_T0027702.1 MGP_AJ_G0017935.1 mouse_genomes_project 11 605231 611354 + Morc2a protein_coding processed_transcript MGP_AJ_T0102097.1 MGP_AJ_G0039867.1 mouse_genomes_project 11 101274527 101295045 + unitary_pseudogene unitary_pseudogene MGP_AJ_T0030506.1 MGP_AJ_G0018628.1 mouse_genomes_project 11 71217238 71237682 - MGP_AJ_P0030506 Aspa protein_coding protein_coding MGP_AJ_T0030507.1 MGP_AJ_G0018628.1 mouse_genomes_project 11 71217238 71242629 - MGP_AJ_P0030507 Aspa protein_coding protein_coding MGP_AJ_T0030508.1 MGP_AJ_G0018628.1 mouse_genomes_project 11 71226007 71239530 - MGP_AJ_P0030508 Aspa protein_coding protein_coding MGP_AJ_T0030509.1 MGP_AJ_G0018628.1 mouse_genomes_project 11 71229039 71237385 - Aspa protein_coding retained_intron MGP_AJ_T0030510.1 MGP_AJ_G0018628.1 mouse_genomes_project 11 71232871 71239860 - MGP_AJ_P0030510 Aspa protein_coding protein_coding MGP_AJ_T0030511.1 MGP_AJ_G0018628.1 mouse_genomes_project 11 71235261 71237662 - MGP_AJ_P0030511 Aspa protein_coding nonsense_mediated_decay MGP_AJ_T0033925.1 MGP_AJ_G0019456.1 mouse_genomes_project 11 118909712 118949322 - Aatk protein_coding processed_transcript MGP_AJ_T0033926.1 MGP_AJ_G0019456.1 mouse_genomes_project 11 118909712 118914808 - Aatk protein_coding processed_transcript MGP_AJ_T0033927.1 MGP_AJ_G0019456.1 mouse_genomes_project 11 118909712 118949225 - MGP_AJ_P0033927 Aatk protein_coding protein_coding MGP_AJ_T0033928.1 MGP_AJ_G0019456.1 mouse_genomes_project 11 118911615 118925516 - MGP_AJ_P0033928 Aatk protein_coding protein_coding MGP_AJ_T0033929.1 MGP_AJ_G0019456.1 mouse_genomes_project 11 118914794 118919337 - Aatk protein_coding processed_transcript MGP_AJ_T0033930.1 MGP_AJ_G0019456.1 mouse_genomes_project 11 118916089 118919596 - Aatk protein_coding processed_transcript MGP_AJ_T0033931.1 MGP_AJ_G0019456.1 mouse_genomes_project 11 118917791 118919312 - Aatk protein_coding processed_transcript MGP_AJ_T0033932.1 MGP_AJ_G0019456.1 mouse_genomes_project 11 118919177 118922609 - Aatk protein_coding processed_transcript MGP_AJ_T0098539.1 MGP_AJ_G0036523.1 mouse_genomes_project 11 57389695 57389832 + Gm24939 rRNA rRNA MGP_AJ_T0030170.1 MGP_AJ_G0018553.1 mouse_genomes_project 11 68048643 68052849 - MGP_AJ_P0030170 Slc16a13 protein_coding protein_coding MGP_AJ_T0030171.1 MGP_AJ_G0018553.1 mouse_genomes_project 11 68050592 68052663 - MGP_AJ_P0030171 Slc16a13 protein_coding protein_coding MGP_AJ_T0030172.1 MGP_AJ_G0018553.1 mouse_genomes_project 11 68051030 68052919 - MGP_AJ_P0030172 Slc16a13 protein_coding protein_coding MGP_AJ_T0030173.1 MGP_AJ_G0018553.1 mouse_genomes_project 11 68051143 68052639 - MGP_AJ_P0030173 Slc16a13 protein_coding protein_coding MGP_AJ_T0100571.1 MGP_AJ_G0038537.1 mouse_genomes_project 11 9638433 9638575 + Gm22156 snoRNA snoRNA MGP_AJ_T0098816.1 MGP_AJ_G0036800.1 mouse_genomes_project 11 8893710 8893838 - Gm25058 scaRNA scaRNA MGP_AJ_T0028633.1 MGP_AJ_G0018157.1 mouse_genomes_project 11 43095311 43111976 - MGP_AJ_P0028633 Lsm11 protein_coding protein_coding MGP_AJ_T0028634.1 MGP_AJ_G0018157.1 mouse_genomes_project 11 43098122 43111976 - MGP_AJ_P0028634 Lsm11 protein_coding nonsense_mediated_decay MGP_AJ_T0003159.1 MGP_AJ_G0002930.1 mouse_genomes_project 11 49610892 49613777 + Gm12207 antisense antisense MGP_AJ_T0100631.1 MGP_AJ_G0038597.1 mouse_genomes_project 11 105127788 105127923 + Gm22711 snoRNA snoRNA MGP_AJ_T0003150.1 MGP_AJ_G0002922.1 mouse_genomes_project 11 43520787 43523517 + Gm12167 antisense antisense MGP_AJ_T0034110.1 MGP_AJ_G0019490.1 mouse_genomes_project 11 119621254 119622296 - protein_coding processed_transcript MGP_AJ_T0034111.1 MGP_AJ_G0019490.1 mouse_genomes_project 11 119621254 119624050 - MGP_AJ_P0034111 protein_coding protein_coding MGP_AJ_T0034112.1 MGP_AJ_G0019490.1 mouse_genomes_project 11 119621254 119624044 - MGP_AJ_P0034112 protein_coding protein_coding MGP_AJ_T0034113.1 MGP_AJ_G0019490.1 mouse_genomes_project 11 119621254 119624044 - MGP_AJ_P0034113 protein_coding protein_coding MGP_AJ_T0034114.1 MGP_AJ_G0019490.1 mouse_genomes_project 11 119621255 119624050 - MGP_AJ_P0034114 protein_coding protein_coding MGP_AJ_T0012731.1 MGP_AJ_G0010826.1 mouse_genomes_project 11 95162053 95162859 + processed_pseudogene processed_pseudogene MGP_AJ_T0003284.1 MGP_AJ_G0003031.1 mouse_genomes_project 11 96946039 96946822 + antisense antisense MGP_AJ_T0099339.1 MGP_AJ_G0037305.1 mouse_genomes_project 11 68852561 68852667 - Gm22297 snRNA snRNA MGP_AJ_T0029912.1 MGP_AJ_G0018496.1 mouse_genomes_project 11 67125100 67131881 + MGP_AJ_P0029912 Kcnab3 protein_coding protein_coding MGP_AJ_T0029913.1 MGP_AJ_G0018496.1 mouse_genomes_project 11 67126708 67131881 + Kcnab3 protein_coding retained_intron MGP_AJ_T0029914.1 MGP_AJ_G0018496.1 mouse_genomes_project 11 67129166 67130982 + Kcnab3 protein_coding retained_intron MGP_AJ_T0003164.1 MGP_AJ_G0002935.1 mouse_genomes_project 11 51709002 51715945 + Gm12223 antisense antisense MGP_AJ_T0029436.1 MGP_AJ_G0018395.1 mouse_genomes_project 11 58472921 58496572 - MGP_AJ_P0029436 Shmt1 protein_coding protein_coding MGP_AJ_T0029437.1 MGP_AJ_G0018395.1 mouse_genomes_project 11 58473717 58484575 - Shmt1 protein_coding processed_transcript MGP_AJ_T0029438.1 MGP_AJ_G0018395.1 mouse_genomes_project 11 58473960 58492301 - MGP_AJ_P0029438 Shmt1 protein_coding protein_coding MGP_AJ_T0029439.1 MGP_AJ_G0018395.1 mouse_genomes_project 11 58473960 58492301 - MGP_AJ_P0029439 Shmt1 protein_coding protein_coding MGP_AJ_T0029440.1 MGP_AJ_G0018395.1 mouse_genomes_project 11 58473960 58492301 - MGP_AJ_P0029440 Shmt1 protein_coding nonsense_mediated_decay MGP_AJ_T0029441.1 MGP_AJ_G0018395.1 mouse_genomes_project 11 58474064 58479596 - Shmt1 protein_coding retained_intron MGP_AJ_T0029442.1 MGP_AJ_G0018395.1 mouse_genomes_project 11 58474412 58477993 - Shmt1 protein_coding retained_intron MGP_AJ_T0029443.1 MGP_AJ_G0018395.1 mouse_genomes_project 11 58477768 58483025 - Shmt1 protein_coding retained_intron MGP_AJ_T0029444.1 MGP_AJ_G0018395.1 mouse_genomes_project 11 58482416 58496398 - Shmt1 protein_coding retained_intron MGP_AJ_T0029445.1 MGP_AJ_G0018395.1 mouse_genomes_project 11 58483823 58487814 - Shmt1 protein_coding processed_transcript MGP_AJ_T0029446.1 MGP_AJ_G0018395.1 mouse_genomes_project 11 58489493 58497030 - Shmt1 protein_coding processed_transcript MGP_AJ_T0030571.1 MGP_AJ_G0018662.1 mouse_genomes_project 11 72563990 72571060 + Cluh protein_coding processed_transcript MGP_AJ_T0030572.1 MGP_AJ_G0018662.1 mouse_genomes_project 11 72564010 72584397 + MGP_AJ_P0030572 Cluh protein_coding protein_coding MGP_AJ_T0030573.1 MGP_AJ_G0018662.1 mouse_genomes_project 11 72564010 72585339 + MGP_AJ_P0030573 Cluh protein_coding protein_coding MGP_AJ_T0030574.1 MGP_AJ_G0018662.1 mouse_genomes_project 11 72564035 72585339 + Cluh protein_coding retained_intron MGP_AJ_T0030575.1 MGP_AJ_G0018662.1 mouse_genomes_project 11 72564325 72571848 + Cluh protein_coding processed_transcript MGP_AJ_T0030576.1 MGP_AJ_G0018662.1 mouse_genomes_project 11 72578973 72579800 + Cluh protein_coding retained_intron MGP_AJ_T0030969.1 MGP_AJ_G0018742.1 mouse_genomes_project 11 76291735 76305400 + MGP_AJ_P0030969 Pigs protein_coding unknown_likely_coding MGP_AJ_T0012550.1 MGP_AJ_G0010645.1 mouse_genomes_project 11 27515656 27520061 + processed_pseudogene processed_pseudogene MGP_AJ_T0029740.1 MGP_AJ_G0018460.1 mouse_genomes_project 11 65222467 65435018 + Gas7 protein_coding processed_transcript MGP_AJ_T0029741.1 MGP_AJ_G0018460.1 mouse_genomes_project 11 65315887 65353911 + Gas7 protein_coding processed_transcript MGP_AJ_T0029742.1 MGP_AJ_G0018460.1 mouse_genomes_project 11 65354878 65373781 + Gas7 protein_coding processed_transcript MGP_AJ_T0029743.1 MGP_AJ_G0018460.1 mouse_genomes_project 11 65354914 65459927 + MGP_AJ_P0029743 Gas7 protein_coding protein_coding MGP_AJ_T0029744.1 MGP_AJ_G0018460.1 mouse_genomes_project 11 65364883 65459916 + MGP_AJ_P0029744 Gas7 protein_coding unknown_likely_coding MGP_AJ_T0029745.1 MGP_AJ_G0018460.1 mouse_genomes_project 11 65364924 65440239 + Gas7 protein_coding processed_transcript MGP_AJ_T0029746.1 MGP_AJ_G0018460.1 mouse_genomes_project 11 65364934 65435003 + Gas7 protein_coding processed_transcript MGP_AJ_T0029747.1 MGP_AJ_G0018460.1 mouse_genomes_project 11 65422233 65454659 + Gas7 protein_coding processed_transcript MGP_AJ_T0029749.1 MGP_AJ_G0018460.1 mouse_genomes_project 11 65453142 65454535 + Gas7 protein_coding processed_transcript MGP_AJ_T0012761.1 MGP_AJ_G0010856.1 mouse_genomes_project 11 104372503 104373770 + processed_pseudogene processed_pseudogene MGP_AJ_T0033196.1 MGP_AJ_G0019308.1 mouse_genomes_project 11 108623513 108687306 - MGP_AJ_P0033196 Abca8b protein_coding unknown_likely_coding MGP_AJ_T0033197.1 MGP_AJ_G0019308.1 mouse_genomes_project 11 108625597 108687233 - MGP_AJ_P0033197 Abca8b protein_coding protein_coding MGP_AJ_T0027932.1 MGP_AJ_G0017988.1 mouse_genomes_project 11 3076025 3163190 - MGP_AJ_P0027932 Nudcd3 protein_coding protein_coding MGP_AJ_T0027933.1 MGP_AJ_G0017988.1 mouse_genomes_project 11 3076320 3089743 - Nudcd3 protein_coding processed_transcript MGP_AJ_T0027934.1 MGP_AJ_G0017988.1 mouse_genomes_project 11 3076792 3156238 - MGP_AJ_P0027934 Nudcd3 protein_coding protein_coding MGP_AJ_T0027935.1 MGP_AJ_G0017988.1 mouse_genomes_project 11 3093258 3156238 - Nudcd3 protein_coding retained_intron MGP_AJ_T0031133.1 MGP_AJ_G0018786.1 mouse_genomes_project 11 79899008 79904752 + 5530401A14Rik protein_coding processed_transcript MGP_AJ_T0031134.1 MGP_AJ_G0018786.1 mouse_genomes_project 11 79899014 79933326 + MGP_AJ_P0031134 5530401A14Rik protein_coding protein_coding MGP_AJ_T0100561.1 MGP_AJ_G0038527.1 mouse_genomes_project 11 391572 391689 - Gm24439 snoRNA snoRNA MGP_AJ_T0006337.1 MGP_AJ_G0005282.1 mouse_genomes_project 11 101152468 101157711 - 2810433D01Rik lincRNA lincRNA MGP_AJ_T0006338.1 MGP_AJ_G0005282.1 mouse_genomes_project 11 101154600 101157661 - 2810433D01Rik lincRNA lincRNA MGP_AJ_T0030820.1 MGP_AJ_G0018714.1 mouse_genomes_project 11 75439275 75453969 + MGP_AJ_P0030820 Git1 protein_coding protein_coding MGP_AJ_T0030821.1 MGP_AJ_G0018714.1 mouse_genomes_project 11 75439284 75453969 + MGP_AJ_P0030821 Git1 protein_coding protein_coding MGP_AJ_T0030822.1 MGP_AJ_G0018714.1 mouse_genomes_project 11 75445236 75449298 + Git1 protein_coding retained_intron MGP_AJ_T0030823.1 MGP_AJ_G0018714.1 mouse_genomes_project 11 75447170 75451268 + Git1 protein_coding retained_intron MGP_AJ_T0030824.1 MGP_AJ_G0018714.1 mouse_genomes_project 11 75448661 75451015 + Git1 protein_coding retained_intron MGP_AJ_T0030825.1 MGP_AJ_G0018714.1 mouse_genomes_project 11 75451318 75452222 + Git1 protein_coding retained_intron MGP_AJ_T0098385.1 MGP_AJ_G0036369.1 mouse_genomes_project 11 56771784 56772262 - pseudogene pseudogene MGP_AJ_T0033146.1 MGP_AJ_G0019296.1 mouse_genomes_project 11 107576902 107610118 + MGP_AJ_P0033146 Axin2 protein_coding protein_coding MGP_AJ_T0033147.1 MGP_AJ_G0019296.1 mouse_genomes_project 11 107577353 107580992 + MGP_AJ_P0033147 Axin2 protein_coding protein_coding MGP_AJ_T0033148.1 MGP_AJ_G0019296.1 mouse_genomes_project 11 107577890 107581007 + MGP_AJ_P0033148 Axin2 protein_coding protein_coding MGP_AJ_T0033149.1 MGP_AJ_G0019296.1 mouse_genomes_project 11 107578202 107580903 + MGP_AJ_P0033149 Axin2 protein_coding protein_coding MGP_AJ_T0033150.1 MGP_AJ_G0019296.1 mouse_genomes_project 11 107580589 107608846 + MGP_AJ_P0033150 Axin2 protein_coding protein_coding MGP_AJ_T0033151.1 MGP_AJ_G0019296.1 mouse_genomes_project 11 107597184 107600887 + Axin2 protein_coding processed_transcript MGP_AJ_T0033152.1 MGP_AJ_G0019296.1 mouse_genomes_project 11 107602949 107610118 + Axin2 protein_coding processed_transcript MGP_AJ_T0017146.1 MGP_AJ_G0015124.1 mouse_genomes_project 11 564010 572396 - Tug1 processed_transcript antisense MGP_AJ_T0017147.1 MGP_AJ_G0015124.1 mouse_genomes_project 11 564686 572400 - Tug1 processed_transcript antisense MGP_AJ_T0017148.1 MGP_AJ_G0015124.1 mouse_genomes_project 11 564686 573682 - Tug1 processed_transcript antisense MGP_AJ_T0017149.1 MGP_AJ_G0015124.1 mouse_genomes_project 11 571719 573912 - Tug1 processed_transcript antisense MGP_AJ_T0017150.1 MGP_AJ_G0015124.1 mouse_genomes_project 11 572931 574549 - Tug1 processed_transcript TEC MGP_AJ_T0029352.1 MGP_AJ_G0018378.1 mouse_genomes_project 11 57533287 57545777 + MGP_AJ_P0029352 Med9 protein_coding protein_coding MGP_AJ_T0033230.1 MGP_AJ_G0019317.1 mouse_genomes_project 11 112001616 112331148 - MGP_AJ_P0033230 Slc39a11 protein_coding unknown_likely_coding MGP_AJ_T0033231.1 MGP_AJ_G0019317.1 mouse_genomes_project 11 112001620 112331137 - MGP_AJ_P0033231 Slc39a11 protein_coding protein_coding MGP_AJ_T0033232.1 MGP_AJ_G0019317.1 mouse_genomes_project 11 112001620 112331128 - MGP_AJ_P0033232 Slc39a11 protein_coding protein_coding MGP_AJ_T0033233.1 MGP_AJ_G0019317.1 mouse_genomes_project 11 112129224 112417409 - MGP_AJ_P0033233 Slc39a11 protein_coding protein_coding MGP_AJ_T0033234.1 MGP_AJ_G0019317.1 mouse_genomes_project 11 112224101 112331148 - MGP_AJ_P0033234 Slc39a11 protein_coding protein_coding MGP_AJ_T0033235.1 MGP_AJ_G0019317.1 mouse_genomes_project 11 112286506 112417417 - MGP_AJ_P0033235 Slc39a11 protein_coding protein_coding MGP_AJ_T0033236.1 MGP_AJ_G0019317.1 mouse_genomes_project 11 112322980 112417408 - MGP_AJ_P0033236 Slc39a11 protein_coding protein_coding MGP_AJ_T0033237.1 MGP_AJ_G0019317.1 mouse_genomes_project 11 112342844 112417408 - Slc39a11 protein_coding processed_transcript MGP_AJ_T0030915.1 MGP_AJ_G0018732.1 mouse_genomes_project 11 76135497 76139267 + MGP_AJ_P0030915 Tlcd1 protein_coding protein_coding MGP_AJ_T0030916.1 MGP_AJ_G0018732.1 mouse_genomes_project 11 76136916 76138409 + MGP_AJ_P0030916 Tlcd1 protein_coding protein_coding MGP_AJ_T0030917.1 MGP_AJ_G0018732.1 mouse_genomes_project 11 76136935 76138941 + Tlcd1 protein_coding processed_transcript MGP_AJ_T0030918.1 MGP_AJ_G0018732.1 mouse_genomes_project 11 76137437 76140696 + MGP_AJ_P0030918 Tlcd1 protein_coding protein_coding MGP_AJ_T0030919.1 MGP_AJ_G0018732.1 mouse_genomes_project 11 76137471 76139607 + MGP_AJ_P0030919 Tlcd1 protein_coding protein_coding MGP_AJ_T0030920.1 MGP_AJ_G0018732.1 mouse_genomes_project 11 76137517 76138394 + Tlcd1 protein_coding retained_intron MGP_AJ_T0030921.1 MGP_AJ_G0018732.1 mouse_genomes_project 11 76137548 76138662 + MGP_AJ_P0030921 Tlcd1 protein_coding protein_coding MGP_AJ_T0030922.1 MGP_AJ_G0018732.1 mouse_genomes_project 11 76138059 76138878 + Tlcd1 protein_coding retained_intron MGP_AJ_T0017250.1 MGP_AJ_G0015178.1 mouse_genomes_project 11 96355645 96359436 + Gm11629 processed_transcript processed_transcript MGP_AJ_T0006352.1 MGP_AJ_G0005295.1 mouse_genomes_project 11 111797283 111927866 - 2610035D17Rik lincRNA lincRNA MGP_AJ_T0006353.1 MGP_AJ_G0005295.1 mouse_genomes_project 11 111797283 111956069 - 2610035D17Rik lincRNA lincRNA MGP_AJ_T0006354.1 MGP_AJ_G0005295.1 mouse_genomes_project 11 111797283 111956053 - 2610035D17Rik lincRNA lincRNA MGP_AJ_T0006355.1 MGP_AJ_G0005295.1 mouse_genomes_project 11 111797905 111927866 - 2610035D17Rik lincRNA lincRNA MGP_AJ_T0009710.1 MGP_AJ_G0007832.1 mouse_genomes_project 11 70550143 70550216 + Gm25678 miRNA miRNA MGP_AJ_T0028250.1 MGP_AJ_G0018064.1 mouse_genomes_project 11 20595717 20662841 + MGP_AJ_P0028250 Pus10 protein_coding protein_coding MGP_AJ_T0028251.1 MGP_AJ_G0018064.1 mouse_genomes_project 11 20595740 20661490 + MGP_AJ_P0028251 Pus10 protein_coding protein_coding MGP_AJ_T0028252.1 MGP_AJ_G0018064.1 mouse_genomes_project 11 20596050 20662841 + MGP_AJ_P0028252 Pus10 protein_coding protein_coding MGP_AJ_T0028253.1 MGP_AJ_G0018064.1 mouse_genomes_project 11 20596231 20603346 + Pus10 protein_coding retained_intron MGP_AJ_T0028254.1 MGP_AJ_G0018064.1 mouse_genomes_project 11 20596554 20603232 + MGP_AJ_P0028254 Pus10 protein_coding protein_coding MGP_AJ_T0028255.1 MGP_AJ_G0018064.1 mouse_genomes_project 11 20647563 20659036 + Pus10 protein_coding retained_intron MGP_AJ_T0028256.1 MGP_AJ_G0018064.1 mouse_genomes_project 11 20648637 20661363 + Pus10 protein_coding retained_intron MGP_AJ_T0030118.1 MGP_AJ_G0018545.1 mouse_genomes_project 11 67825531 67835048 + MGP_AJ_P0030118 Dvl2 protein_coding protein_coding MGP_AJ_T0030119.1 MGP_AJ_G0018545.1 mouse_genomes_project 11 67825553 67837238 + MGP_AJ_P0030119 Dvl2 protein_coding protein_coding MGP_AJ_T0030120.1 MGP_AJ_G0018545.1 mouse_genomes_project 11 67825757 67831898 + Dvl2 protein_coding retained_intron MGP_AJ_T0030121.1 MGP_AJ_G0018545.1 mouse_genomes_project 11 67825771 67830950 + Dvl2 protein_coding retained_intron MGP_AJ_T0030122.1 MGP_AJ_G0018545.1 mouse_genomes_project 11 67830394 67832410 + Dvl2 protein_coding retained_intron MGP_AJ_T0030123.1 MGP_AJ_G0018545.1 mouse_genomes_project 11 67831916 67833006 + Dvl2 protein_coding retained_intron MGP_AJ_T0028510.1 MGP_AJ_G0018127.1 mouse_genomes_project 11 32240599 32833028 + MGP_AJ_P0028510 Slit3 protein_coding protein_coding MGP_AJ_T0028511.1 MGP_AJ_G0018127.1 mouse_genomes_project 11 32291650 32356477 + Slit3 protein_coding processed_transcript MGP_AJ_T0028512.1 MGP_AJ_G0018127.1 mouse_genomes_project 11 32297810 32633520 + Slit3 protein_coding processed_transcript MGP_AJ_T0028513.1 MGP_AJ_G0018127.1 mouse_genomes_project 11 32668742 32737171 + Slit3 protein_coding processed_transcript MGP_AJ_T0028630.1 MGP_AJ_G0018156.1 mouse_genomes_project 11 43018294 43077184 + MGP_AJ_P0028630 Clint1 protein_coding protein_coding MGP_AJ_T0028631.1 MGP_AJ_G0018156.1 mouse_genomes_project 11 43018294 43077184 + MGP_AJ_P0028631 Clint1 protein_coding protein_coding MGP_AJ_T0028632.1 MGP_AJ_G0018156.1 mouse_genomes_project 11 43048588 43077184 + Clint1 protein_coding processed_transcript MGP_AJ_T0031860.1 MGP_AJ_G0018979.1 mouse_genomes_project 11 95055644 95065555 - MGP_AJ_P0031860 Snx11 protein_coding protein_coding MGP_AJ_T0031861.1 MGP_AJ_G0018979.1 mouse_genomes_project 11 95055966 95065583 - MGP_AJ_P0031861 Snx11 protein_coding protein_coding MGP_AJ_T0031862.1 MGP_AJ_G0018979.1 mouse_genomes_project 11 95057979 95065516 - MGP_AJ_P0031862 Snx11 protein_coding protein_coding MGP_AJ_T0031863.1 MGP_AJ_G0018979.1 mouse_genomes_project 11 95058186 95059139 - Snx11 protein_coding processed_transcript MGP_AJ_T0031864.1 MGP_AJ_G0018979.1 mouse_genomes_project 11 95060563 95062659 - Snx11 protein_coding processed_transcript MGP_AJ_T0031865.1 MGP_AJ_G0018979.1 mouse_genomes_project 11 95064317 95065544 - Snx11 protein_coding processed_transcript MGP_AJ_T0031912.1 MGP_AJ_G0018990.1 mouse_genomes_project 11 95350782 95358475 + MGP_AJ_P0031912 Mrpl10 protein_coding protein_coding MGP_AJ_T0031913.1 MGP_AJ_G0018990.1 mouse_genomes_project 11 95350817 95357783 + MGP_AJ_P0031913 Mrpl10 protein_coding protein_coding MGP_AJ_T0012675.1 MGP_AJ_G0010770.1 mouse_genomes_project 11 71996043 71996776 - processed_pseudogene processed_pseudogene MGP_AJ_T0027686.1 MGP_AJ_G0017934.1 mouse_genomes_project 11 435110 456896 - Smtn protein_coding processed_transcript MGP_AJ_T0027687.1 MGP_AJ_G0017934.1 mouse_genomes_project 11 435110 445525 - MGP_AJ_P0027687 Smtn protein_coding protein_coding MGP_AJ_T0027688.1 MGP_AJ_G0017934.1 mouse_genomes_project 11 435110 456936 - MGP_AJ_P0027688 Smtn protein_coding protein_coding MGP_AJ_T0027689.1 MGP_AJ_G0017934.1 mouse_genomes_project 11 435110 456936 - MGP_AJ_P0027689 Smtn protein_coding protein_coding MGP_AJ_T0027690.1 MGP_AJ_G0017934.1 mouse_genomes_project 11 435110 456883 - MGP_AJ_P0027690 Smtn protein_coding protein_coding MGP_AJ_T0027691.1 MGP_AJ_G0017934.1 mouse_genomes_project 11 435110 454986 - MGP_AJ_P0027691 Smtn protein_coding protein_coding MGP_AJ_T0027692.1 MGP_AJ_G0017934.1 mouse_genomes_project 11 438126 440142 - Smtn protein_coding processed_transcript MGP_AJ_T0027693.1 MGP_AJ_G0017934.1 mouse_genomes_project 11 450047 458258 - MGP_AJ_P0027693 Smtn protein_coding protein_coding MGP_AJ_T0027694.1 MGP_AJ_G0017934.1 mouse_genomes_project 11 450190 456895 - MGP_AJ_P0027694 Smtn protein_coding protein_coding MGP_AJ_T0027695.1 MGP_AJ_G0017934.1 mouse_genomes_project 11 452401 456893 - Smtn protein_coding processed_transcript MGP_AJ_T0030991.1 MGP_AJ_G0018749.1 mouse_genomes_project 11 76474534 76476169 + MGP_AJ_P0030991 Sebox protein_coding protein_coding MGP_AJ_T0030992.1 MGP_AJ_G0018749.1 mouse_genomes_project 11 76474586 76476162 + MGP_AJ_P0030992 Sebox protein_coding protein_coding MGP_AJ_T0099357.1 MGP_AJ_G0037323.1 mouse_genomes_project 11 85598366 85598530 + Rnu1a1 snRNA snRNA MGP_AJ_T0006208.1 MGP_AJ_G0005183.1 mouse_genomes_project 11 26598104 26632499 - Gm12092 lincRNA lincRNA MGP_AJ_T0009769.1 MGP_AJ_G0007891.1 mouse_genomes_project 11 117744295 117744361 - Gm25040 miRNA miRNA MGP_AJ_T0032211.1 MGP_AJ_G0019068.1 mouse_genomes_project 11 97936595 97937199 - MGP_AJ_P0032211 Krtap3-1 protein_coding protein_coding MGP_AJ_T0012700.1 MGP_AJ_G0010795.1 mouse_genomes_project 11 80768446 80768740 + processed_pseudogene processed_pseudogene MGP_AJ_T0003263.1 MGP_AJ_G0003013.1 mouse_genomes_project 11 93292434 93297948 + Gm11513 antisense antisense MGP_AJ_T0027996.1 MGP_AJ_G0018002.1 mouse_genomes_project 11 3614489 3616474 - Wap protein_coding processed_transcript MGP_AJ_T0027997.1 MGP_AJ_G0018002.1 mouse_genomes_project 11 3614489 3617810 - MGP_AJ_P0027997 Wap protein_coding protein_coding MGP_AJ_T0027998.1 MGP_AJ_G0018002.1 mouse_genomes_project 11 3614546 3616463 - Wap protein_coding processed_transcript MGP_AJ_T0099355.1 MGP_AJ_G0037321.1 mouse_genomes_project 11 84605448 84605554 - Gm26439 snRNA snRNA MGP_AJ_T0028037.1 MGP_AJ_G0018015.1 mouse_genomes_project 11 8091671 8235838 + MGP_AJ_P0028037 Vwc2 protein_coding protein_coding MGP_AJ_T0028038.1 MGP_AJ_G0018015.1 mouse_genomes_project 11 8092192 8241241 + MGP_AJ_P0028038 Vwc2 protein_coding nonsense_mediated_decay MGP_AJ_T0028039.1 MGP_AJ_G0018015.1 mouse_genomes_project 11 8093299 8238948 + MGP_AJ_P0028039 Vwc2 protein_coding protein_coding MGP_AJ_T0028040.1 MGP_AJ_G0018015.1 mouse_genomes_project 11 8093933 8105642 + Vwc2 protein_coding processed_transcript MGP_AJ_T0006302.1 MGP_AJ_G0005258.1 mouse_genomes_project 11 82920456 82934425 - Gm11431 lincRNA lincRNA MGP_AJ_T0006238.1 MGP_AJ_G0005210.1 mouse_genomes_project 11 48520878 48551365 - lincRNA lincRNA MGP_AJ_T0006239.1 MGP_AJ_G0005210.1 mouse_genomes_project 11 48521296 48550473 - lincRNA lincRNA MGP_AJ_T0031043.1 MGP_AJ_G0018764.1 mouse_genomes_project 11 77505966 77509057 - MGP_AJ_P0031043 Omg protein_coding protein_coding MGP_AJ_T0029151.1 MGP_AJ_G0018299.1 mouse_genomes_project 11 52876582 52903214 - MGP_AJ_P0029151 Sparc protein_coding protein_coding MGP_AJ_T0029152.1 MGP_AJ_G0018299.1 mouse_genomes_project 11 52876582 52903396 - MGP_AJ_P0029152 Sparc protein_coding protein_coding MGP_AJ_T0029153.1 MGP_AJ_G0018299.1 mouse_genomes_project 11 52877466 52881752 - Sparc protein_coding processed_transcript MGP_AJ_T0029154.1 MGP_AJ_G0018299.1 mouse_genomes_project 11 52877599 52885211 - Sparc protein_coding processed_transcript MGP_AJ_T0029155.1 MGP_AJ_G0018299.1 mouse_genomes_project 11 52881429 52903214 - MGP_AJ_P0029155 Sparc protein_coding protein_coding MGP_AJ_T0029156.1 MGP_AJ_G0018299.1 mouse_genomes_project 11 52892416 52903216 - Sparc protein_coding processed_transcript MGP_AJ_T0017137.1 MGP_AJ_G0015120.1 mouse_genomes_project 11 222006 234080 + Gm11944 processed_transcript processed_transcript MGP_AJ_T0012715.1 MGP_AJ_G0010810.1 mouse_genomes_project 11 86545858 86546183 + processed_pseudogene processed_pseudogene MGP_AJ_T0032967.1 MGP_AJ_G0019257.1 mouse_genomes_project 11 104615581 104626334 + MGP_AJ_P0032967 Ace3 protein_coding protein_coding MGP_AJ_T0028135.1 MGP_AJ_G0018038.1 mouse_genomes_project 11 17148570 17171118 - MGP_AJ_P0028135 Cep68 protein_coding protein_coding MGP_AJ_T0028136.1 MGP_AJ_G0018038.1 mouse_genomes_project 11 17160118 17171204 - MGP_AJ_P0028136 Cep68 protein_coding protein_coding MGP_AJ_T0028137.1 MGP_AJ_G0018038.1 mouse_genomes_project 11 17163264 17171169 - Cep68 protein_coding retained_intron MGP_AJ_T0099327.1 MGP_AJ_G0037293.1 mouse_genomes_project 11 50791556 50791663 + Gm25930 snRNA snRNA MGP_AJ_T0030309.1 MGP_AJ_G0018582.1 mouse_genomes_project 11 68557566 68588926 + MGP_AJ_P0030309 Kif1c protein_coding protein_coding MGP_AJ_T0030310.1 MGP_AJ_G0018582.1 mouse_genomes_project 11 68557566 68564592 + MGP_AJ_P0030310 Kif1c protein_coding protein_coding MGP_AJ_T0030311.1 MGP_AJ_G0018582.1 mouse_genomes_project 11 68557579 68587349 + MGP_AJ_P0030311 Kif1c protein_coding protein_coding MGP_AJ_T0030312.1 MGP_AJ_G0018582.1 mouse_genomes_project 11 68557594 68587386 + MGP_AJ_P0030312 Kif1c protein_coding protein_coding MGP_AJ_T0030313.1 MGP_AJ_G0018582.1 mouse_genomes_project 11 68557668 68588926 + MGP_AJ_P0030313 Kif1c protein_coding protein_coding MGP_AJ_T0027714.1 MGP_AJ_G0017940.1 mouse_genomes_project 11 850334 864840 - MGP_AJ_P0027714 Tcn2 protein_coding protein_coding MGP_AJ_T0027715.1 MGP_AJ_G0017940.1 mouse_genomes_project 11 850334 865013 - MGP_AJ_P0027715 Tcn2 protein_coding protein_coding MGP_AJ_T0027716.1 MGP_AJ_G0017940.1 mouse_genomes_project 11 850334 865212 - MGP_AJ_P0027716 Tcn2 protein_coding protein_coding MGP_AJ_T0027717.1 MGP_AJ_G0017940.1 mouse_genomes_project 11 850334 865131 - MGP_AJ_P0027717 Tcn2 protein_coding protein_coding MGP_AJ_T0027718.1 MGP_AJ_G0017940.1 mouse_genomes_project 11 850334 865097 - MGP_AJ_P0027718 Tcn2 protein_coding protein_coding MGP_AJ_T0027719.1 MGP_AJ_G0017940.1 mouse_genomes_project 11 850334 865048 - MGP_AJ_P0027719 Tcn2 protein_coding protein_coding MGP_AJ_T0027720.1 MGP_AJ_G0017940.1 mouse_genomes_project 11 850334 864855 - MGP_AJ_P0027720 Tcn2 protein_coding protein_coding MGP_AJ_T0028616.1 MGP_AJ_G0018154.1 mouse_genomes_project 11 41695149 41741560 + MGP_AJ_P0028616 Rnf145 protein_coding protein_coding MGP_AJ_T0028617.1 MGP_AJ_G0018154.1 mouse_genomes_project 11 41695168 41700537 + Rnf145 protein_coding processed_transcript MGP_AJ_T0028618.1 MGP_AJ_G0018154.1 mouse_genomes_project 11 41695627 41731182 + MGP_AJ_P0028618 Rnf145 protein_coding protein_coding MGP_AJ_T0028619.1 MGP_AJ_G0018154.1 mouse_genomes_project 11 41696490 41725133 + Rnf145 protein_coding processed_transcript MGP_AJ_T0028620.1 MGP_AJ_G0018154.1 mouse_genomes_project 11 41732809 41736022 + Rnf145 protein_coding processed_transcript MGP_AJ_T0028621.1 MGP_AJ_G0018154.1 mouse_genomes_project 11 41736003 41737966 + Rnf145 protein_coding processed_transcript MGP_AJ_T0031278.1 MGP_AJ_G0018834.1 mouse_genomes_project 11 82282521 82368210 + MGP_AJ_P0031278 Acaca protein_coding protein_coding MGP_AJ_T0031279.1 MGP_AJ_G0018834.1 mouse_genomes_project 11 82282549 82285952 + Acaca protein_coding processed_transcript MGP_AJ_T0031281.1 MGP_AJ_G0018834.1 mouse_genomes_project 11 82326967 82389213 + Acaca protein_coding retained_intron MGP_AJ_T0031282.1 MGP_AJ_G0018834.1 mouse_genomes_project 11 82333587 82368115 + MGP_AJ_P0031282 Acaca protein_coding protein_coding MGP_AJ_T0031283.1 MGP_AJ_G0018834.1 mouse_genomes_project 11 82333587 82385358 + MGP_AJ_P0031283 Acaca protein_coding protein_coding MGP_AJ_T0031284.1 MGP_AJ_G0018834.1 mouse_genomes_project 11 82333614 82368104 + MGP_AJ_P0031284 Acaca protein_coding protein_coding MGP_AJ_T0031285.1 MGP_AJ_G0018834.1 mouse_genomes_project 11 82333789 82554657 + MGP_AJ_P0031285 Acaca protein_coding protein_coding MGP_AJ_T0031286.1 MGP_AJ_G0018834.1 mouse_genomes_project 11 82434077 82462867 + MGP_AJ_P0031286 Acaca protein_coding protein_coding MGP_AJ_T0033241.1 MGP_AJ_G0019319.1 mouse_genomes_project 11 112416505 112430604 + MGP_AJ_P0033241 Cog1 protein_coding protein_coding MGP_AJ_T0033242.1 MGP_AJ_G0019319.1 mouse_genomes_project 11 112416664 112430044 + MGP_AJ_P0033242 Cog1 protein_coding protein_coding MGP_AJ_T0033243.1 MGP_AJ_G0019319.1 mouse_genomes_project 11 112422693 112424256 + Cog1 protein_coding retained_intron MGP_AJ_T0033244.1 MGP_AJ_G0019319.1 mouse_genomes_project 11 112425382 112434724 + MGP_AJ_P0033244 Cog1 protein_coding protein_coding MGP_AJ_T0033245.1 MGP_AJ_G0019319.1 mouse_genomes_project 11 112425519 112429287 + MGP_AJ_P0033245 Cog1 protein_coding protein_coding MGP_AJ_T0033246.1 MGP_AJ_G0019319.1 mouse_genomes_project 11 112425537 112429323 + MGP_AJ_P0033246 Cog1 protein_coding protein_coding MGP_AJ_T0033247.1 MGP_AJ_G0019319.1 mouse_genomes_project 11 112426591 112430045 + MGP_AJ_P0033247 Cog1 protein_coding nonsense_mediated_decay MGP_AJ_T0033248.1 MGP_AJ_G0019319.1 mouse_genomes_project 11 112427301 112430045 + MGP_AJ_P0033248 Cog1 protein_coding protein_coding MGP_AJ_T0031176.1 MGP_AJ_G0018801.1 mouse_genomes_project 11 80950237 80958051 - MGP_AJ_P0031176 Nle1 protein_coding protein_coding MGP_AJ_T0031177.1 MGP_AJ_G0018801.1 mouse_genomes_project 11 80950241 80951292 - Nle1 protein_coding retained_intron MGP_AJ_T0031178.1 MGP_AJ_G0018801.1 mouse_genomes_project 11 80950249 80953823 - MGP_AJ_P0031178 Nle1 protein_coding nonsense_mediated_decay MGP_AJ_T0031179.1 MGP_AJ_G0018801.1 mouse_genomes_project 11 80951214 80953802 - Nle1 protein_coding retained_intron MGP_AJ_T0031180.1 MGP_AJ_G0018801.1 mouse_genomes_project 11 80953623 80954180 - Nle1 protein_coding retained_intron MGP_AJ_T0031181.1 MGP_AJ_G0018801.1 mouse_genomes_project 11 80954335 80957327 - MGP_AJ_P0031181 Nle1 protein_coding nonsense_mediated_decay MGP_AJ_T0031182.1 MGP_AJ_G0018801.1 mouse_genomes_project 11 80954465 80957982 - Nle1 protein_coding retained_intron MGP_AJ_T0029647.1 MGP_AJ_G0018433.1 mouse_genomes_project 11 60593266 60627697 + MGP_AJ_P0029647 Fbxw10 protein_coding protein_coding MGP_AJ_T0029648.1 MGP_AJ_G0018433.1 mouse_genomes_project 11 60593320 60627694 + MGP_AJ_P0029648 Fbxw10 protein_coding nonsense_mediated_decay MGP_AJ_T0029649.1 MGP_AJ_G0018433.1 mouse_genomes_project 11 60593320 60627694 + MGP_AJ_P0029649 Fbxw10 protein_coding protein_coding MGP_AJ_T0029650.1 MGP_AJ_G0018433.1 mouse_genomes_project 11 60593325 60597502 + Fbxw10 protein_coding retained_intron MGP_AJ_T0029651.1 MGP_AJ_G0018433.1 mouse_genomes_project 11 60593329 60627675 + MGP_AJ_P0029651 Fbxw10 protein_coding protein_coding MGP_AJ_T0029652.1 MGP_AJ_G0018433.1 mouse_genomes_project 11 60625107 60626985 + Fbxw10 protein_coding processed_transcript MGP_AJ_T0029535.1 MGP_AJ_G0018412.1 mouse_genomes_project 11 59352949 59372418 + MGP_AJ_P0029535 Grap protein_coding protein_coding MGP_AJ_T0029536.1 MGP_AJ_G0018412.1 mouse_genomes_project 11 59368679 59369514 + Grap protein_coding processed_transcript MGP_AJ_T0031169.1 MGP_AJ_G0018799.1 mouse_genomes_project 11 80925568 80939429 - MGP_AJ_P0031169 Rad51d protein_coding nonsense_mediated_decay MGP_AJ_T0031170.1 MGP_AJ_G0018799.1 mouse_genomes_project 11 80925833 80939454 - MGP_AJ_P0031170 Rad51d protein_coding protein_coding MGP_AJ_T0031171.1 MGP_AJ_G0018799.1 mouse_genomes_project 11 80927868 80939429 - MGP_AJ_P0031171 Rad51d protein_coding nonsense_mediated_decay MGP_AJ_T0031172.1 MGP_AJ_G0018799.1 mouse_genomes_project 11 80927868 80939429 - MGP_AJ_P0031172 Rad51d protein_coding protein_coding MGP_AJ_T0031173.1 MGP_AJ_G0018799.1 mouse_genomes_project 11 80927868 80939429 - MGP_AJ_P0031173 Rad51d protein_coding protein_coding MGP_AJ_T0031174.1 MGP_AJ_G0018799.1 mouse_genomes_project 11 80927868 80939429 - MGP_AJ_P0031174 Rad51d protein_coding nonsense_mediated_decay MGP_AJ_T0030872.1 MGP_AJ_G0018724.1 mouse_genomes_project 11 75883853 75931813 + MGP_AJ_P0030872 Sez6 protein_coding protein_coding MGP_AJ_T0030873.1 MGP_AJ_G0018724.1 mouse_genomes_project 11 75883892 75931813 + Sez6 protein_coding retained_intron MGP_AJ_T0030874.1 MGP_AJ_G0018724.1 mouse_genomes_project 11 75883970 75916821 + Sez6 protein_coding retained_intron MGP_AJ_T0030875.1 MGP_AJ_G0018724.1 mouse_genomes_project 11 75884065 75931805 + MGP_AJ_P0030875 Sez6 protein_coding protein_coding MGP_AJ_T0030876.1 MGP_AJ_G0018724.1 mouse_genomes_project 11 75884092 75930826 + Sez6 protein_coding retained_intron MGP_AJ_T0030877.1 MGP_AJ_G0018724.1 mouse_genomes_project 11 75904166 75907609 + Sez6 protein_coding processed_transcript MGP_AJ_T0030878.1 MGP_AJ_G0018724.1 mouse_genomes_project 11 75906699 75931813 + MGP_AJ_P0030878 Sez6 protein_coding nonsense_mediated_decay MGP_AJ_T0030879.1 MGP_AJ_G0018724.1 mouse_genomes_project 11 75921732 75927254 + MGP_AJ_P0030879 Sez6 protein_coding protein_coding MGP_AJ_T0030880.1 MGP_AJ_G0018724.1 mouse_genomes_project 11 75925938 75927140 + Sez6 protein_coding retained_intron MGP_AJ_T0033772.1 MGP_AJ_G0019424.1 mouse_genomes_project 11 116721793 116729593 + MGP_AJ_P0033772 Birc5 protein_coding protein_coding MGP_AJ_T0033773.1 MGP_AJ_G0019424.1 mouse_genomes_project 11 116721861 116729604 + MGP_AJ_P0033773 Birc5 protein_coding protein_coding MGP_AJ_T0030715.1 MGP_AJ_G0018692.1 mouse_genomes_project 11 73947414 73956003 - MGP_AJ_P0030715 Fam101b protein_coding protein_coding MGP_AJ_T0012738.1 MGP_AJ_G0010833.1 mouse_genomes_project 11 97669149 97670142 - processed_pseudogene processed_pseudogene MGP_AJ_T0033840.1 MGP_AJ_G0019440.1 mouse_genomes_project 11 117918499 117926808 + MGP_AJ_P0033840 Cbx2 protein_coding protein_coding MGP_AJ_T0033841.1 MGP_AJ_G0019440.1 mouse_genomes_project 11 117919262 117923576 + Cbx2 protein_coding processed_transcript MGP_AJ_T0029240.1 MGP_AJ_G0018335.1 mouse_genomes_project 11 56110732 56111704 - MGP_AJ_P0029240 Olfr323 protein_coding protein_coding MGP_AJ_T0029241.1 MGP_AJ_G0018335.1 mouse_genomes_project 11 56110732 56111701 - MGP_AJ_P0029241 Olfr323 protein_coding protein_coding MGP_AJ_T0032404.1 MGP_AJ_G0019146.1 mouse_genomes_project 11 99539842 99543897 + MGP_AJ_P0032404 Coasy protein_coding protein_coding MGP_AJ_T0032405.1 MGP_AJ_G0019146.1 mouse_genomes_project 11 99539895 99542898 + Coasy protein_coding processed_transcript MGP_AJ_T0032406.1 MGP_AJ_G0019146.1 mouse_genomes_project 11 99539902 99543897 + MGP_AJ_P0032406 Coasy protein_coding protein_coding MGP_AJ_T0032407.1 MGP_AJ_G0019146.1 mouse_genomes_project 11 99541172 99542457 + Coasy protein_coding processed_transcript MGP_AJ_T0031136.1 MGP_AJ_G0018788.1 mouse_genomes_project 11 80078528 80080407 + MGP_AJ_P0031136 Ccl2 protein_coding protein_coding MGP_AJ_T0031137.1 MGP_AJ_G0018788.1 mouse_genomes_project 11 80078567 80080404 + Ccl2 protein_coding retained_intron MGP_AJ_T0006206.1 MGP_AJ_G0005181.1 mouse_genomes_project 11 25770285 25833027 + Gm12082 lincRNA lincRNA MGP_AJ_T0003227.1 MGP_AJ_G0002986.1 mouse_genomes_project 11 73785374 73785900 + Gm16075 antisense antisense MGP_AJ_T0012565.1 MGP_AJ_G0010660.1 mouse_genomes_project 11 32445851 32446323 - processed_pseudogene processed_pseudogene MGP_AJ_T0009689.1 MGP_AJ_G0007811.1 mouse_genomes_project 11 57892145 57892263 - Gm27711 miRNA miRNA MGP_AJ_T0003346.1 MGP_AJ_G0003082.1 mouse_genomes_project 11 115934310 115936430 - Gm11730 antisense antisense MGP_AJ_T0003347.1 MGP_AJ_G0003082.1 mouse_genomes_project 11 115934447 115936390 - Gm11730 antisense antisense MGP_AJ_T0028720.1 MGP_AJ_G0018188.1 mouse_genomes_project 11 46318321 46320419 - MGP_AJ_P0028720 protein_coding protein_coding MGP_AJ_T0028409.1 MGP_AJ_G0018099.1 mouse_genomes_project 11 29233795 29246850 - MGP_AJ_P0028409 Il9r protein_coding protein_coding MGP_AJ_T0028410.1 MGP_AJ_G0018099.1 mouse_genomes_project 11 29235255 29246907 - MGP_AJ_P0028410 Il9r protein_coding nonsense_mediated_decay MGP_AJ_T0028411.1 MGP_AJ_G0018099.1 mouse_genomes_project 11 29236545 29246864 - MGP_AJ_P0028411 Il9r protein_coding protein_coding MGP_AJ_T0028412.1 MGP_AJ_G0018099.1 mouse_genomes_project 11 29236761 29246850 - MGP_AJ_P0028412 Il9r protein_coding protein_coding MGP_AJ_T0028413.1 MGP_AJ_G0018099.1 mouse_genomes_project 11 29240828 29246907 - Il9r protein_coding retained_intron MGP_AJ_T0029451.1 MGP_AJ_G0018398.1 mouse_genomes_project 11 58589045 58600351 - MGP_AJ_P0029451 Natd1 protein_coding protein_coding MGP_AJ_T0029452.1 MGP_AJ_G0018398.1 mouse_genomes_project 11 58592757 58601291 - Natd1 protein_coding processed_transcript MGP_AJ_T0003334.1 MGP_AJ_G0003071.1 mouse_genomes_project 11 108106513 108107713 - Gm15642 antisense antisense MGP_AJ_T0006272.1 MGP_AJ_G0005238.1 mouse_genomes_project 11 69543497 69554883 - Gm12324 lincRNA lincRNA MGP_AJ_T0028041.1 MGP_AJ_G0018016.1 mouse_genomes_project 11 8252081 8432743 - MGP_AJ_P0028041 Zpbp protein_coding protein_coding MGP_AJ_T0031140.1 MGP_AJ_G0018791.1 mouse_genomes_project 11 80144907 80146463 + MGP_AJ_P0031140 Ccl12 protein_coding protein_coding MGP_AJ_T0031141.1 MGP_AJ_G0018791.1 mouse_genomes_project 11 80144914 80146430 + Ccl12 protein_coding processed_transcript MGP_AJ_T0006184.1 MGP_AJ_G0005163.1 mouse_genomes_project 11 17749552 17749991 - Gm12037 lincRNA lincRNA MGP_AJ_T0032860.1 MGP_AJ_G0019235.1 mouse_genomes_project 11 102236668 102259786 - MGP_AJ_P0032860 Gosr2 protein_coding protein_coding MGP_AJ_T0032861.1 MGP_AJ_G0019235.1 mouse_genomes_project 11 102240603 102259582 - MGP_AJ_P0032861 Gosr2 protein_coding protein_coding MGP_AJ_T0032862.1 MGP_AJ_G0019235.1 mouse_genomes_project 11 102240810 102259586 - Gosr2 protein_coding processed_transcript MGP_AJ_T0028569.1 MGP_AJ_G0018141.1 mouse_genomes_project 11 40181568 40183081 + MGP_AJ_P0028569 Gm9972 protein_coding protein_coding MGP_AJ_T0003232.1 MGP_AJ_G0002991.1 mouse_genomes_project 11 77014668 77022088 + Gm11201 antisense antisense MGP_AJ_T0100572.1 MGP_AJ_G0038538.1 mouse_genomes_project 11 9653273 9653403 + Gm22789 snoRNA snoRNA MGP_AJ_T0030391.1 MGP_AJ_G0018597.1 mouse_genomes_project 11 69939314 70028007 - MGP_AJ_P0030391 Pitpnm3 protein_coding protein_coding MGP_AJ_T0030392.1 MGP_AJ_G0018597.1 mouse_genomes_project 11 69939314 70027950 - MGP_AJ_P0030392 Pitpnm3 protein_coding protein_coding MGP_AJ_T0030393.1 MGP_AJ_G0018597.1 mouse_genomes_project 11 69942906 69943847 - Pitpnm3 protein_coding processed_transcript MGP_AJ_T0030394.1 MGP_AJ_G0018597.1 mouse_genomes_project 11 69949412 69953319 - Pitpnm3 protein_coding retained_intron MGP_AJ_T0030395.1 MGP_AJ_G0018597.1 mouse_genomes_project 11 69959566 70028007 - Pitpnm3 protein_coding retained_intron MGP_AJ_T0006252.1 MGP_AJ_G0005222.1 mouse_genomes_project 11 59584929 59587094 + Gm26964 lincRNA lincRNA MGP_AJ_T0033785.1 MGP_AJ_G0019429.1 mouse_genomes_project 11 116899698 117010680 - MGP_AJ_P0033785 Dnah17 protein_coding protein_coding MGP_AJ_T0033786.1 MGP_AJ_G0019429.1 mouse_genomes_project 11 116899698 117010680 - MGP_AJ_P0033786 Dnah17 protein_coding protein_coding MGP_AJ_T0033787.1 MGP_AJ_G0019429.1 mouse_genomes_project 11 116901055 116984375 - MGP_AJ_P0033787 Dnah17 protein_coding protein_coding MGP_AJ_T0033788.1 MGP_AJ_G0019429.1 mouse_genomes_project 11 116967272 116973745 - MGP_AJ_P0033788 Dnah17 protein_coding protein_coding MGP_AJ_T0033789.1 MGP_AJ_G0019429.1 mouse_genomes_project 11 116993475 117007084 - MGP_AJ_P0033789 Dnah17 protein_coding protein_coding MGP_AJ_T0032267.1 MGP_AJ_G0019116.1 mouse_genomes_project 11 98697842 98700927 - Krt42 protein_coding retained_intron MGP_AJ_T0032268.1 MGP_AJ_G0019116.1 mouse_genomes_project 11 98697847 98704805 - MGP_AJ_P0032268 Krt42 protein_coding protein_coding MGP_AJ_T0030970.1 MGP_AJ_G0018743.1 mouse_genomes_project 11 76306744 76312420 + MGP_AJ_P0030970 Unc119 protein_coding protein_coding MGP_AJ_T0030971.1 MGP_AJ_G0018743.1 mouse_genomes_project 11 76306760 76311105 + Unc119 protein_coding retained_intron MGP_AJ_T0030972.1 MGP_AJ_G0018743.1 mouse_genomes_project 11 76306768 76312420 + MGP_AJ_P0030972 Unc119 protein_coding protein_coding MGP_AJ_T0030973.1 MGP_AJ_G0018743.1 mouse_genomes_project 11 76306807 76312152 + Unc119 protein_coding retained_intron MGP_AJ_T0030974.1 MGP_AJ_G0018743.1 mouse_genomes_project 11 76309921 76312235 + MGP_AJ_P0030974 Unc119 protein_coding protein_coding MGP_AJ_T0030975.1 MGP_AJ_G0018743.1 mouse_genomes_project 11 76310166 76311375 + Unc119 protein_coding retained_intron MGP_AJ_T0030976.1 MGP_AJ_G0018743.1 mouse_genomes_project 11 76311190 76312254 + Unc119 protein_coding retained_intron MGP_AJ_T0006177.1 MGP_AJ_G0005157.1 mouse_genomes_project 11 15363367 15389253 - Gm12022 lincRNA lincRNA MGP_AJ_T0009650.1 MGP_AJ_G0007772.1 mouse_genomes_project 11 1082500 1082583 + Mir3060 miRNA miRNA MGP_AJ_T0012684.1 MGP_AJ_G0010779.1 mouse_genomes_project 11 75488151 75490752 + processed_pseudogene processed_pseudogene MGP_AJ_T0029434.1 MGP_AJ_G0018394.1 mouse_genomes_project 11 58462464 58466008 + MGP_AJ_P0029434 Smcr8 protein_coding protein_coding MGP_AJ_T0029435.1 MGP_AJ_G0018394.1 mouse_genomes_project 11 58462465 58473105 + MGP_AJ_P0029435 Smcr8 protein_coding protein_coding MGP_AJ_T0033128.1 MGP_AJ_G0019295.1 mouse_genomes_project 11 107072205 107516972 + MGP_AJ_P0033128 Cep112 protein_coding protein_coding MGP_AJ_T0033129.1 MGP_AJ_G0019295.1 mouse_genomes_project 11 107072279 107516971 + MGP_AJ_P0033129 Cep112 protein_coding protein_coding MGP_AJ_T0033130.1 MGP_AJ_G0019295.1 mouse_genomes_project 11 107072290 107120345 + Cep112 protein_coding retained_intron MGP_AJ_T0033131.1 MGP_AJ_G0019295.1 mouse_genomes_project 11 107072304 107088207 + MGP_AJ_P0033131 Cep112 protein_coding protein_coding MGP_AJ_T0033132.1 MGP_AJ_G0019295.1 mouse_genomes_project 11 107072478 107179304 + MGP_AJ_P0033132 Cep112 protein_coding protein_coding MGP_AJ_T0033133.1 MGP_AJ_G0019295.1 mouse_genomes_project 11 107072521 107516972 + MGP_AJ_P0033133 Cep112 protein_coding protein_coding MGP_AJ_T0033134.1 MGP_AJ_G0019295.1 mouse_genomes_project 11 107072629 107516616 + MGP_AJ_P0033134 Cep112 protein_coding protein_coding MGP_AJ_T0033135.1 MGP_AJ_G0019295.1 mouse_genomes_project 11 107149271 107516707 + MGP_AJ_P0033135 Cep112 protein_coding protein_coding MGP_AJ_T0033136.1 MGP_AJ_G0019295.1 mouse_genomes_project 11 107179294 107218616 + Cep112 protein_coding retained_intron MGP_AJ_T0033137.1 MGP_AJ_G0019295.1 mouse_genomes_project 11 107239967 107413686 + MGP_AJ_P0033137 Cep112 protein_coding protein_coding MGP_AJ_T0033138.1 MGP_AJ_G0019295.1 mouse_genomes_project 11 107258299 107313291 + Cep112 protein_coding processed_transcript MGP_AJ_T0033139.1 MGP_AJ_G0019295.1 mouse_genomes_project 11 107291199 107516610 + Cep112 protein_coding processed_transcript MGP_AJ_T0033140.1 MGP_AJ_G0019295.1 mouse_genomes_project 11 107295264 107512231 + Cep112 protein_coding processed_transcript MGP_AJ_T0033141.1 MGP_AJ_G0019295.1 mouse_genomes_project 11 107332159 107516706 + MGP_AJ_P0033141 Cep112 protein_coding protein_coding MGP_AJ_T0033142.1 MGP_AJ_G0019295.1 mouse_genomes_project 11 107332166 107516972 + MGP_AJ_P0033142 Cep112 protein_coding protein_coding MGP_AJ_T0033143.1 MGP_AJ_G0019295.1 mouse_genomes_project 11 107332175 107516711 + MGP_AJ_P0033143 Cep112 protein_coding protein_coding MGP_AJ_T0033144.1 MGP_AJ_G0019295.1 mouse_genomes_project 11 107367529 107464582 + Cep112 protein_coding processed_transcript MGP_AJ_T0033145.1 MGP_AJ_G0019295.1 mouse_genomes_project 11 107408139 107515719 + MGP_AJ_P0033145 Cep112 protein_coding protein_coding MGP_AJ_T0006226.1 MGP_AJ_G0005199.1 mouse_genomes_project 11 41126732 41307093 + Gm12153 lincRNA lincRNA MGP_AJ_T0033369.1 MGP_AJ_G0019353.1 mouse_genomes_project 11 114210910 114219899 + MGP_AJ_P0033369 Ict1 protein_coding protein_coding MGP_AJ_T0033370.1 MGP_AJ_G0019353.1 mouse_genomes_project 11 114210912 114219887 + MGP_AJ_P0033370 Ict1 protein_coding protein_coding MGP_AJ_T0033371.1 MGP_AJ_G0019353.1 mouse_genomes_project 11 114210915 114218144 + MGP_AJ_P0033371 Ict1 protein_coding protein_coding MGP_AJ_T0033372.1 MGP_AJ_G0019353.1 mouse_genomes_project 11 114210925 114217278 + Ict1 protein_coding retained_intron MGP_AJ_T0033373.1 MGP_AJ_G0019353.1 mouse_genomes_project 11 114210929 114217486 + MGP_AJ_P0033373 Ict1 protein_coding nonsense_mediated_decay MGP_AJ_T0033374.1 MGP_AJ_G0019353.1 mouse_genomes_project 11 114210935 114217984 + Ict1 protein_coding processed_transcript MGP_AJ_T0033375.1 MGP_AJ_G0019353.1 mouse_genomes_project 11 114210940 114217476 + Ict1 protein_coding retained_intron MGP_AJ_T0033376.1 MGP_AJ_G0019353.1 mouse_genomes_project 11 114210980 114217949 + Ict1 protein_coding processed_transcript MGP_AJ_T0033377.1 MGP_AJ_G0019353.1 mouse_genomes_project 11 114217085 114217944 + Ict1 protein_coding retained_intron MGP_AJ_T0033378.1 MGP_AJ_G0019353.1 mouse_genomes_project 11 114217384 114218133 + Ict1 protein_coding retained_intron MGP_AJ_T0030516.1 MGP_AJ_G0018631.1 mouse_genomes_project 11 71304774 71309186 - MGP_AJ_P0030516 Olfr1 protein_coding protein_coding MGP_AJ_T0030517.1 MGP_AJ_G0018631.1 mouse_genomes_project 11 71305130 71309186 - MGP_AJ_P0030517 Olfr1 protein_coding protein_coding MGP_AJ_T0028515.1 MGP_AJ_G0018129.1 mouse_genomes_project 11 32924147 32925650 - MGP_AJ_P0028515 Fbll1 protein_coding protein_coding MGP_AJ_T0009739.1 MGP_AJ_G0007861.1 mouse_genomes_project 11 95982381 95982452 - Gm24158 miRNA miRNA MGP_AJ_T0000839.1 MGP_AJ_G0000774.1 mouse_genomes_project 11 15330139 15330735 + TEC TEC MGP_AJ_T0029032.1 MGP_AJ_G0018271.1 mouse_genomes_project 11 51054507 51110979 - MGP_AJ_P0029032 Rad50 protein_coding protein_coding MGP_AJ_T0029033.1 MGP_AJ_G0018271.1 mouse_genomes_project 11 51079398 51110979 - MGP_AJ_P0029033 Rad50 protein_coding nonsense_mediated_decay MGP_AJ_T0029034.1 MGP_AJ_G0018271.1 mouse_genomes_project 11 51083240 51084618 - Rad50 protein_coding processed_transcript MGP_AJ_T0029035.1 MGP_AJ_G0018271.1 mouse_genomes_project 11 51088302 51110955 - MGP_AJ_P0029035 Rad50 protein_coding protein_coding MGP_AJ_T0029036.1 MGP_AJ_G0018271.1 mouse_genomes_project 11 51095569 51098650 - Rad50 protein_coding processed_transcript MGP_AJ_T0029448.1 MGP_AJ_G0018397.1 mouse_genomes_project 11 58551756 58566152 - MGP_AJ_P0029448 Tmem11 protein_coding protein_coding MGP_AJ_T0029449.1 MGP_AJ_G0018397.1 mouse_genomes_project 11 58551756 58566386 - MGP_AJ_P0029449 Tmem11 protein_coding protein_coding MGP_AJ_T0029450.1 MGP_AJ_G0018397.1 mouse_genomes_project 11 58552290 58565901 - MGP_AJ_P0029450 Tmem11 protein_coding protein_coding MGP_AJ_T0028671.1 MGP_AJ_G0018170.1 mouse_genomes_project 11 43769162 43793793 - MGP_AJ_P0028671 Dppa1 protein_coding protein_coding MGP_AJ_T0028672.1 MGP_AJ_G0018170.1 mouse_genomes_project 11 43770100 43793793 - MGP_AJ_P0028672 Dppa1 protein_coding protein_coding MGP_AJ_T0032879.1 MGP_AJ_G0019240.1 mouse_genomes_project 11 102706768 102750519 + MGP_AJ_P0032879 Crhr1 protein_coding protein_coding MGP_AJ_T0031478.1 MGP_AJ_G0018878.1 mouse_genomes_project 11 85946242 85972146 + MGP_AJ_P0031478 Bzrap1 protein_coding protein_coding MGP_AJ_T0031479.1 MGP_AJ_G0018878.1 mouse_genomes_project 11 85946288 85972146 + MGP_AJ_P0031479 Bzrap1 protein_coding protein_coding MGP_AJ_T0031480.1 MGP_AJ_G0018878.1 mouse_genomes_project 11 85950441 85952106 + Bzrap1 protein_coding processed_transcript MGP_AJ_T0031481.1 MGP_AJ_G0018878.1 mouse_genomes_project 11 85962327 85965736 + MGP_AJ_P0031481 Bzrap1 protein_coding protein_coding MGP_AJ_T0031482.1 MGP_AJ_G0018878.1 mouse_genomes_project 11 85962734 85972146 + MGP_AJ_P0031482 Bzrap1 protein_coding protein_coding MGP_AJ_T0031483.1 MGP_AJ_G0018878.1 mouse_genomes_project 11 85963292 85972146 + Bzrap1 protein_coding retained_intron MGP_AJ_T0031484.1 MGP_AJ_G0018878.1 mouse_genomes_project 11 85964990 85972146 + Bzrap1 protein_coding retained_intron MGP_AJ_T0031485.1 MGP_AJ_G0018878.1 mouse_genomes_project 11 85965149 85966487 + Bzrap1 protein_coding retained_intron MGP_AJ_T0031486.1 MGP_AJ_G0018878.1 mouse_genomes_project 11 85966493 85970959 + MGP_AJ_P0031486 Bzrap1 protein_coding protein_coding MGP_AJ_T0031487.1 MGP_AJ_G0018878.1 mouse_genomes_project 11 85967774 85969412 + Bzrap1 protein_coding retained_intron MGP_AJ_T0009698.1 MGP_AJ_G0007820.1 mouse_genomes_project 11 67450751 67450871 - Mir467f miRNA miRNA MGP_AJ_T0009673.1 MGP_AJ_G0007795.1 mouse_genomes_project 11 43344490 43344547 + Mir7239 miRNA miRNA MGP_AJ_T0032354.1 MGP_AJ_G0019134.1 mouse_genomes_project 11 99164508 99165234 + MGP_AJ_P0032354 Hspb9 protein_coding protein_coding MGP_AJ_T0032355.1 MGP_AJ_G0019134.1 mouse_genomes_project 11 99164580 99165232 + MGP_AJ_P0032355 Hspb9 protein_coding protein_coding MGP_AJ_T0099315.1 MGP_AJ_G0037281.1 mouse_genomes_project 11 19792637 19792741 + Gm24917 snRNA snRNA MGP_AJ_T0033989.1 MGP_AJ_G0019468.1 mouse_genomes_project 11 119355882 119361746 - Pde6g protein_coding processed_transcript MGP_AJ_T0033990.1 MGP_AJ_G0019468.1 mouse_genomes_project 11 119355901 119361764 - Pde6g protein_coding processed_transcript MGP_AJ_T0033991.1 MGP_AJ_G0019468.1 mouse_genomes_project 11 119355903 119361812 - MGP_AJ_P0033991 Pde6g protein_coding protein_coding MGP_AJ_T0098546.1 MGP_AJ_G0036530.1 mouse_genomes_project 11 88399675 88399794 - n-R5s72 rRNA rRNA MGP_AJ_T0030774.1 MGP_AJ_G0018705.1 mouse_genomes_project 11 74723609 74789559 - MGP_AJ_P0030774 Cpd protein_coding protein_coding MGP_AJ_T0030775.1 MGP_AJ_G0018705.1 mouse_genomes_project 11 74734900 74739778 - Cpd protein_coding retained_intron MGP_AJ_T0030776.1 MGP_AJ_G0018705.1 mouse_genomes_project 11 74754702 74757799 - Cpd protein_coding retained_intron MGP_AJ_T0006254.1 MGP_AJ_G0005224.1 mouse_genomes_project 11 60492607 60495532 + Gm27194 lincRNA lincRNA MGP_AJ_T0012754.1 MGP_AJ_G0010849.1 mouse_genomes_project 11 102445160 102445489 - processed_pseudogene processed_pseudogene MGP_AJ_T0033739.1 MGP_AJ_G0019417.1 mouse_genomes_project 11 116635914 116650877 - MGP_AJ_P0033739 Tmc6 protein_coding protein_coding MGP_AJ_T0033740.1 MGP_AJ_G0019417.1 mouse_genomes_project 11 116635914 116649886 - MGP_AJ_P0033740 Tmc6 protein_coding nonsense_mediated_decay MGP_AJ_T0033741.1 MGP_AJ_G0019417.1 mouse_genomes_project 11 116635986 116639000 - Tmc6 protein_coding retained_intron MGP_AJ_T0033742.1 MGP_AJ_G0019417.1 mouse_genomes_project 11 116640000 116643209 - MGP_AJ_P0033742 Tmc6 protein_coding nonsense_mediated_decay MGP_AJ_T0033743.1 MGP_AJ_G0019417.1 mouse_genomes_project 11 116645514 116650859 - MGP_AJ_P0033743 Tmc6 protein_coding protein_coding MGP_AJ_T0033744.1 MGP_AJ_G0019417.1 mouse_genomes_project 11 116645874 116649888 - MGP_AJ_P0033744 Tmc6 protein_coding protein_coding MGP_AJ_T0033745.1 MGP_AJ_G0019417.1 mouse_genomes_project 11 116648979 116651182 - MGP_AJ_P0033745 Tmc6 protein_coding protein_coding MGP_AJ_T0033746.1 MGP_AJ_G0019417.1 mouse_genomes_project 11 116649175 116652436 - MGP_AJ_P0033746 Tmc6 protein_coding protein_coding MGP_AJ_T0033747.1 MGP_AJ_G0019417.1 mouse_genomes_project 11 116649429 116650896 - MGP_AJ_P0033747 Tmc6 protein_coding protein_coding MGP_AJ_T0102233.1 MGP_AJ_G0039976.1 mouse_genomes_project 11 55980367 55981307 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0028514.1 MGP_AJ_G0018128.1 mouse_genomes_project 11 32895100 32918015 + MGP_AJ_P0028514 Pank3 protein_coding protein_coding MGP_AJ_T0031228.1 MGP_AJ_G0018817.1 mouse_genomes_project 11 81583464 81599492 + Taf15 protein_coding processed_transcript MGP_AJ_T0031229.1 MGP_AJ_G0018817.1 mouse_genomes_project 11 81583470 81616888 + MGP_AJ_P0031229 Taf15 protein_coding protein_coding MGP_AJ_T0031230.1 MGP_AJ_G0018817.1 mouse_genomes_project 11 81583489 81592792 + Taf15 protein_coding retained_intron MGP_AJ_T0031231.1 MGP_AJ_G0018817.1 mouse_genomes_project 11 81583493 81599324 + Taf15 protein_coding processed_transcript MGP_AJ_T0031232.1 MGP_AJ_G0018817.1 mouse_genomes_project 11 81599305 81616886 + MGP_AJ_P0031232 Taf15 protein_coding protein_coding MGP_AJ_T0012740.1 MGP_AJ_G0010835.1 mouse_genomes_project 11 98103836 98103989 + processed_pseudogene processed_pseudogene MGP_AJ_T0100618.1 MGP_AJ_G0038584.1 mouse_genomes_project 11 81402549 81402646 + Snord7 snoRNA snoRNA MGP_AJ_T0032995.1 MGP_AJ_G0019267.1 mouse_genomes_project 11 104876107 104883045 - MGP_AJ_P0032995 Ftsj3 protein_coding protein_coding MGP_AJ_T0032996.1 MGP_AJ_G0019267.1 mouse_genomes_project 11 104876864 104877664 - Ftsj3 protein_coding retained_intron MGP_AJ_T0032997.1 MGP_AJ_G0019267.1 mouse_genomes_project 11 104877974 104879520 - Ftsj3 protein_coding retained_intron MGP_AJ_T0032998.1 MGP_AJ_G0019267.1 mouse_genomes_project 11 104880341 104880961 - Ftsj3 protein_coding retained_intron MGP_AJ_T0032999.1 MGP_AJ_G0019267.1 mouse_genomes_project 11 104881257 104882762 - Ftsj3 protein_coding retained_intron MGP_AJ_T0033000.1 MGP_AJ_G0019267.1 mouse_genomes_project 11 104881828 104882770 - Ftsj3 protein_coding retained_intron MGP_AJ_T0009688.1 MGP_AJ_G0007810.1 mouse_genomes_project 11 57789113 57789179 - Mir6922 miRNA miRNA MGP_AJ_T0012614.1 MGP_AJ_G0010709.1 mouse_genomes_project 11 51660081 51660341 + processed_pseudogene processed_pseudogene MGP_AJ_T0009660.1 MGP_AJ_G0007782.1 mouse_genomes_project 11 21610700 21610844 - Gm25507 miRNA miRNA MGP_AJ_T0032617.1 MGP_AJ_G0019192.1 mouse_genomes_project 11 100675829 100699065 - MGP_AJ_P0032617 Lsm12 protein_coding protein_coding MGP_AJ_T0032618.1 MGP_AJ_G0019192.1 mouse_genomes_project 11 100675829 100699132 - MGP_AJ_P0032618 Lsm12 protein_coding protein_coding MGP_AJ_T0032619.1 MGP_AJ_G0019192.1 mouse_genomes_project 11 100677244 100696721 - Lsm12 protein_coding processed_transcript MGP_AJ_T0032620.1 MGP_AJ_G0019192.1 mouse_genomes_project 11 100677408 100699093 - Lsm12 protein_coding processed_transcript MGP_AJ_T0032621.1 MGP_AJ_G0019192.1 mouse_genomes_project 11 100680433 100699097 - Lsm12 protein_coding processed_transcript MGP_AJ_T0034085.1 MGP_AJ_G0019488.1 mouse_genomes_project 11 119563733 119570552 - MGP_AJ_P0034085 Notum protein_coding protein_coding MGP_AJ_T0034086.1 MGP_AJ_G0019488.1 mouse_genomes_project 11 119563733 119570775 - MGP_AJ_P0034086 Notum protein_coding protein_coding MGP_AJ_T0034087.1 MGP_AJ_G0019488.1 mouse_genomes_project 11 119563790 119567990 - Notum protein_coding retained_intron MGP_AJ_T0034088.1 MGP_AJ_G0019488.1 mouse_genomes_project 11 119567508 119571121 - MGP_AJ_P0034088 Notum protein_coding protein_coding MGP_AJ_T0003315.1 MGP_AJ_G0003056.1 mouse_genomes_project 11 104668788 104669490 - Gm11646 antisense antisense MGP_AJ_T0033512.1 MGP_AJ_G0019374.1 mouse_genomes_project 11 114727527 114733868 + MGP_AJ_P0033512 Smim5 protein_coding protein_coding MGP_AJ_T0033513.1 MGP_AJ_G0019374.1 mouse_genomes_project 11 114727739 114733495 + MGP_AJ_P0033513 Smim5 protein_coding protein_coding MGP_AJ_T0033514.1 MGP_AJ_G0019374.1 mouse_genomes_project 11 114727763 114733312 + MGP_AJ_P0033514 Smim5 protein_coding protein_coding MGP_AJ_T0029205.1 MGP_AJ_G0018318.1 mouse_genomes_project 11 55795691 55803290 + MGP_AJ_P0029205 Zfp692 protein_coding protein_coding MGP_AJ_T0029206.1 MGP_AJ_G0018318.1 mouse_genomes_project 11 55795794 55803304 + MGP_AJ_P0029206 Zfp692 protein_coding protein_coding MGP_AJ_T0032856.1 MGP_AJ_G0019233.1 mouse_genomes_project 11 102188707 102196535 - MGP_AJ_P0032856 Lyzl6 protein_coding protein_coding MGP_AJ_T0032857.1 MGP_AJ_G0019233.1 mouse_genomes_project 11 102188710 102196546 - MGP_AJ_P0032857 Lyzl6 protein_coding protein_coding MGP_AJ_T0032858.1 MGP_AJ_G0019233.1 mouse_genomes_project 11 102188713 102192656 - Lyzl6 protein_coding processed_transcript MGP_AJ_T0032975.1 MGP_AJ_G0019261.1 mouse_genomes_project 11 104706512 104779915 + MGP_AJ_P0032975 Map3k3 protein_coding protein_coding MGP_AJ_T0032976.1 MGP_AJ_G0019261.1 mouse_genomes_project 11 104775693 104776860 + Map3k3 protein_coding processed_transcript MGP_AJ_T0032977.1 MGP_AJ_G0019261.1 mouse_genomes_project 11 104776545 104778608 + Map3k3 protein_coding processed_transcript MGP_AJ_T0009741.1 MGP_AJ_G0007863.1 mouse_genomes_project 11 96068025 96068164 + Mir8102 miRNA miRNA MGP_AJ_T0034174.1 MGP_AJ_G0019502.1 mouse_genomes_project 11 119959681 119962353 - MGP_AJ_P0034174 Cd7 protein_coding protein_coding MGP_AJ_T0034175.1 MGP_AJ_G0019502.1 mouse_genomes_project 11 119960819 119962353 - Cd7 protein_coding retained_intron MGP_AJ_T0028263.1 MGP_AJ_G0018068.1 mouse_genomes_project 11 21008882 21105438 + MGP_AJ_P0028263 Bcl11a protein_coding protein_coding MGP_AJ_T0028264.1 MGP_AJ_G0018068.1 mouse_genomes_project 11 21008943 21106367 + MGP_AJ_P0028264 Bcl11a protein_coding protein_coding MGP_AJ_T0028265.1 MGP_AJ_G0018068.1 mouse_genomes_project 11 21008973 21021720 + Bcl11a protein_coding retained_intron MGP_AJ_T0028266.1 MGP_AJ_G0018068.1 mouse_genomes_project 11 21008999 21100673 + MGP_AJ_P0028266 Bcl11a protein_coding protein_coding MGP_AJ_T0028267.1 MGP_AJ_G0018068.1 mouse_genomes_project 11 21011496 21105802 + MGP_AJ_P0028267 Bcl11a protein_coding protein_coding MGP_AJ_T0028268.1 MGP_AJ_G0018068.1 mouse_genomes_project 11 21074626 21095533 + Bcl11a protein_coding processed_transcript MGP_AJ_T0031826.1 MGP_AJ_G0018966.1 mouse_genomes_project 11 94377952 94390725 - MGP_AJ_P0031826 protein_coding protein_coding MGP_AJ_T0030324.1 MGP_AJ_G0018586.1 mouse_genomes_project 11 68799315 68825963 - Nup88 protein_coding retained_intron MGP_AJ_T0030325.1 MGP_AJ_G0018586.1 mouse_genomes_project 11 68799329 68825977 - MGP_AJ_P0030325 Nup88 protein_coding protein_coding MGP_AJ_T0030326.1 MGP_AJ_G0018586.1 mouse_genomes_project 11 68799334 68802643 - Nup88 protein_coding retained_intron MGP_AJ_T0030327.1 MGP_AJ_G0018586.1 mouse_genomes_project 11 68799339 68825966 - MGP_AJ_P0030327 Nup88 protein_coding protein_coding MGP_AJ_T0030328.1 MGP_AJ_G0018586.1 mouse_genomes_project 11 68799359 68825958 - MGP_AJ_P0030328 Nup88 protein_coding protein_coding MGP_AJ_T0030329.1 MGP_AJ_G0018586.1 mouse_genomes_project 11 68799433 68825884 - MGP_AJ_P0030329 Nup88 protein_coding nonsense_mediated_decay MGP_AJ_T0030330.1 MGP_AJ_G0018586.1 mouse_genomes_project 11 68800136 68801358 - Nup88 protein_coding retained_intron MGP_AJ_T0030331.1 MGP_AJ_G0018586.1 mouse_genomes_project 11 68800195 68800746 - Nup88 protein_coding retained_intron MGP_AJ_T0030332.1 MGP_AJ_G0018586.1 mouse_genomes_project 11 68800237 68800995 - Nup88 protein_coding retained_intron MGP_AJ_T0030333.1 MGP_AJ_G0018586.1 mouse_genomes_project 11 68800670 68801292 - Nup88 protein_coding retained_intron MGP_AJ_T0030334.1 MGP_AJ_G0018586.1 mouse_genomes_project 11 68800940 68805096 - Nup88 protein_coding retained_intron MGP_AJ_T0030335.1 MGP_AJ_G0018586.1 mouse_genomes_project 11 68805845 68825965 - Nup88 protein_coding retained_intron MGP_AJ_T0030336.1 MGP_AJ_G0018586.1 mouse_genomes_project 11 68810723 68812725 - Nup88 protein_coding retained_intron MGP_AJ_T0030337.1 MGP_AJ_G0018586.1 mouse_genomes_project 11 68811421 68813176 - Nup88 protein_coding retained_intron MGP_AJ_T0030338.1 MGP_AJ_G0018586.1 mouse_genomes_project 11 68812462 68818054 - Nup88 protein_coding retained_intron MGP_AJ_T0009680.1 MGP_AJ_G0007802.1 mouse_genomes_project 11 49468850 49468941 + Mir3061 miRNA miRNA MGP_AJ_T0006245.1 MGP_AJ_G0005216.1 mouse_genomes_project 11 56392699 56393865 + Gm12259 lincRNA lincRNA MGP_AJ_T0099374.1 MGP_AJ_G0037340.1 mouse_genomes_project 11 100121091 100121282 + Gm23849 snRNA snRNA MGP_AJ_T0030619.1 MGP_AJ_G0018670.1 mouse_genomes_project 11 73077129 73082075 - MGP_AJ_P0030619 protein_coding protein_coding MGP_AJ_T0030620.1 MGP_AJ_G0018670.1 mouse_genomes_project 11 73079717 73080711 - protein_coding processed_transcript MGP_AJ_T0102230.1 MGP_AJ_G0039973.1 mouse_genomes_project 11 48243350 48244351 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0003120.1 MGP_AJ_G0002897.1 mouse_genomes_project 11 8668495 8669802 - Gm12000 antisense antisense MGP_AJ_T0033039.1 MGP_AJ_G0019278.1 mouse_genomes_project 11 105283281 105345880 - MGP_AJ_P0033039 Pecam1 protein_coding protein_coding MGP_AJ_T0033040.1 MGP_AJ_G0019278.1 mouse_genomes_project 11 105283286 105346090 - MGP_AJ_P0033040 Pecam1 protein_coding protein_coding MGP_AJ_T0033041.1 MGP_AJ_G0019278.1 mouse_genomes_project 11 105291397 105293487 - Pecam1 protein_coding retained_intron MGP_AJ_T0033042.1 MGP_AJ_G0019278.1 mouse_genomes_project 11 105292004 105382634 - MGP_AJ_P0033042 Pecam1 protein_coding protein_coding MGP_AJ_T0033043.1 MGP_AJ_G0019278.1 mouse_genomes_project 11 105319716 105322268 - Pecam1 protein_coding retained_intron MGP_AJ_T0033044.1 MGP_AJ_G0019278.1 mouse_genomes_project 11 105322003 105345774 - MGP_AJ_P0033044 Pecam1 protein_coding protein_coding MGP_AJ_T0031011.1 MGP_AJ_G0018755.1 mouse_genomes_project 11 76543693 76676785 - MGP_AJ_P0031011 Nlk protein_coding protein_coding MGP_AJ_T0031012.1 MGP_AJ_G0018755.1 mouse_genomes_project 11 76543927 76544462 - Nlk protein_coding processed_transcript MGP_AJ_T0031013.1 MGP_AJ_G0018755.1 mouse_genomes_project 11 76543939 76549095 - MGP_AJ_P0031013 Nlk protein_coding protein_coding MGP_AJ_T0031014.1 MGP_AJ_G0018755.1 mouse_genomes_project 11 76593821 76674997 - Nlk protein_coding retained_intron MGP_AJ_T0031244.1 MGP_AJ_G0018825.1 mouse_genomes_project 11 81837231 81839508 + MGP_AJ_P0031244 Wfdc17 protein_coding protein_coding MGP_AJ_T0100634.1 MGP_AJ_G0038600.1 mouse_genomes_project 11 115527859 115527935 + Snord1c snoRNA snoRNA MGP_AJ_T0032425.1 MGP_AJ_G0019151.1 mouse_genomes_project 11 99618820 99623605 + MGP_AJ_P0032425 Tubg2 protein_coding protein_coding MGP_AJ_T0017289.1 MGP_AJ_G0015199.1 mouse_genomes_project 11 119089566 119092918 - 2810410L24Rik processed_transcript processed_transcript MGP_AJ_T0017290.1 MGP_AJ_G0015199.1 mouse_genomes_project 11 119091873 119094019 - 2810410L24Rik processed_transcript processed_transcript MGP_AJ_T0009654.1 MGP_AJ_G0007776.1 mouse_genomes_project 11 3437710 3437763 - Gm22123 miRNA miRNA MGP_AJ_T0003357.1 MGP_AJ_G0003092.1 mouse_genomes_project 11 119140246 119141135 - Gm11772 antisense antisense MGP_AJ_T0028189.1 MGP_AJ_G0018051.1 mouse_genomes_project 11 19682643 19783286 - MGP_AJ_P0028189 Gm12057 protein_coding nonsense_mediated_decay MGP_AJ_T0030104.1 MGP_AJ_G0018542.1 mouse_genomes_project 11 67806536 67815042 + MGP_AJ_P0030104 Ctdnep1 protein_coding protein_coding MGP_AJ_T0030105.1 MGP_AJ_G0018542.1 mouse_genomes_project 11 67809306 67814553 + Ctdnep1 protein_coding retained_intron MGP_AJ_T0030106.1 MGP_AJ_G0018542.1 mouse_genomes_project 11 67814075 67815162 + Ctdnep1 protein_coding retained_intron MGP_AJ_T0030107.1 MGP_AJ_G0018542.1 mouse_genomes_project 11 67814095 67815407 + Ctdnep1 protein_coding processed_transcript MGP_AJ_T0032915.1 MGP_AJ_G0019247.1 mouse_genomes_project 11 103261067 103327705 + MGP_AJ_P0032915 protein_coding protein_coding MGP_AJ_T0032916.1 MGP_AJ_G0019247.1 mouse_genomes_project 11 103279089 103299056 + protein_coding processed_transcript MGP_AJ_T0027830.1 MGP_AJ_G0017967.1 mouse_genomes_project 11 2011164 2023362 - Gas2l1 protein_coding processed_transcript MGP_AJ_T0027831.1 MGP_AJ_G0017967.1 mouse_genomes_project 11 2013459 2023368 - MGP_AJ_P0027831 Gas2l1 protein_coding protein_coding MGP_AJ_T0027834.1 MGP_AJ_G0017967.1 mouse_genomes_project 11 2018441 2023395 - MGP_AJ_P0027834 Gas2l1 protein_coding protein_coding MGP_AJ_T0027835.1 MGP_AJ_G0017967.1 mouse_genomes_project 11 2018450 2023345 - MGP_AJ_P0027835 Gas2l1 protein_coding protein_coding MGP_AJ_T0027836.1 MGP_AJ_G0017967.1 mouse_genomes_project 11 2018539 2022919 - Gas2l1 protein_coding processed_transcript MGP_AJ_T0027837.1 MGP_AJ_G0017967.1 mouse_genomes_project 11 2021940 2023346 - MGP_AJ_P0027837 Gas2l1 protein_coding protein_coding MGP_AJ_T0027838.1 MGP_AJ_G0017967.1 mouse_genomes_project 11 2022484 2023362 - Gas2l1 protein_coding processed_transcript MGP_AJ_T0012463.1 MGP_AJ_G0010558.1 mouse_genomes_project 11 1872202 1872696 + processed_pseudogene processed_pseudogene MGP_AJ_T0033351.1 MGP_AJ_G0019347.1 mouse_genomes_project 11 114081993 114100269 - MGP_AJ_P0033351 Fads6 protein_coding protein_coding MGP_AJ_T0033352.1 MGP_AJ_G0019347.1 mouse_genomes_project 11 114097739 114100418 - Fads6 protein_coding processed_transcript MGP_AJ_T0006214.1 MGP_AJ_G0005187.1 mouse_genomes_project 11 29863610 29864574 - 4930555O08Rik lincRNA lincRNA MGP_AJ_T0031249.1 MGP_AJ_G0018828.1 mouse_genomes_project 11 81879887 81914666 + MGP_AJ_P0031249 Heatr6 protein_coding unknown_likely_coding MGP_AJ_T0031250.1 MGP_AJ_G0018828.1 mouse_genomes_project 11 81886667 81914965 + Heatr6 protein_coding processed_transcript MGP_AJ_T0031251.1 MGP_AJ_G0018828.1 mouse_genomes_project 11 81886982 81888765 + Heatr6 protein_coding processed_transcript MGP_AJ_T0031252.1 MGP_AJ_G0018828.1 mouse_genomes_project 11 81893635 81898229 + Heatr6 protein_coding retained_intron MGP_AJ_T0031253.1 MGP_AJ_G0018828.1 mouse_genomes_project 11 81907347 81911861 + Heatr6 protein_coding processed_transcript MGP_AJ_T0098898.1 MGP_AJ_G0036881.1 mouse_genomes_project 11 66044900 66046222 - Gm12305 sense_intronic sense_intronic MGP_AJ_T0030417.1 MGP_AJ_G0018604.1 mouse_genomes_project 11 70209590 70215604 + MGP_AJ_P0030417 Fbxo39 protein_coding protein_coding MGP_AJ_T0032237.1 MGP_AJ_G0019094.1 mouse_genomes_project 11 98269445 98274475 + MGP_AJ_P0032237 protein_coding protein_coding MGP_AJ_T0033392.1 MGP_AJ_G0019356.1 mouse_genomes_project 11 114247923 114255920 + MGP_AJ_P0033392 Trim80 protein_coding protein_coding MGP_AJ_T0028650.1 MGP_AJ_G0018163.1 mouse_genomes_project 11 43413653 43417997 + MGP_AJ_P0028650 Fndc9 protein_coding protein_coding MGP_AJ_T0012689.1 MGP_AJ_G0010784.1 mouse_genomes_project 11 76535026 76535308 - processed_pseudogene processed_pseudogene MGP_AJ_T0030228.1 MGP_AJ_G0018568.1 mouse_genomes_project 11 68359960 68361501 + MGP_AJ_P0030228 Gltpd2 protein_coding protein_coding MGP_AJ_T0030229.1 MGP_AJ_G0018568.1 mouse_genomes_project 11 68360403 68361284 + MGP_AJ_P0030229 Gltpd2 protein_coding protein_coding MGP_AJ_T0031080.1 MGP_AJ_G0018774.1 mouse_genomes_project 11 78177633 78202778 + MGP_AJ_P0031080 Adap2 protein_coding protein_coding MGP_AJ_T0031081.1 MGP_AJ_G0018774.1 mouse_genomes_project 11 78177644 78189305 + MGP_AJ_P0031081 Adap2 protein_coding nonsense_mediated_decay MGP_AJ_T0009707.1 MGP_AJ_G0007829.1 mouse_genomes_project 11 68563013 68563083 + Mir6925 miRNA miRNA MGP_AJ_T0032231.1 MGP_AJ_G0019088.1 mouse_genomes_project 11 98173584 98174483 - MGP_AJ_P0032231 protein_coding protein_coding MGP_AJ_T0032251.1 MGP_AJ_G0019107.1 mouse_genomes_project 11 98498511 98502508 - MGP_AJ_P0032251 Krt35 protein_coding protein_coding MGP_AJ_T0032252.1 MGP_AJ_G0019107.1 mouse_genomes_project 11 98498513 98502524 - Krt35 protein_coding retained_intron MGP_AJ_T0009763.1 MGP_AJ_G0007885.1 mouse_genomes_project 11 114055606 114055714 + Gm25837 miRNA miRNA MGP_AJ_T0032649.1 MGP_AJ_G0019195.1 mouse_genomes_project 11 100762949 100779214 + MGP_AJ_P0032649 BC030867 protein_coding nonsense_mediated_decay MGP_AJ_T0032650.1 MGP_AJ_G0019195.1 mouse_genomes_project 11 100762949 100779214 + MGP_AJ_P0032650 BC030867 protein_coding protein_coding MGP_AJ_T0032651.1 MGP_AJ_G0019195.1 mouse_genomes_project 11 100769672 100774636 + BC030867 protein_coding processed_transcript MGP_AJ_T0032652.1 MGP_AJ_G0019195.1 mouse_genomes_project 11 100769676 100774634 + BC030867 protein_coding processed_transcript MGP_AJ_T0032653.1 MGP_AJ_G0019195.1 mouse_genomes_project 11 100775983 100779214 + BC030867 protein_coding processed_transcript MGP_AJ_T0031506.1 MGP_AJ_G0018885.1 mouse_genomes_project 11 86113197 86114281 - MGP_AJ_P0031506 Olfr464 protein_coding protein_coding MGP_AJ_T0031507.1 MGP_AJ_G0018885.1 mouse_genomes_project 11 86113842 86115781 - MGP_AJ_P0031507 Olfr464 protein_coding protein_coding MGP_AJ_T0033015.1 MGP_AJ_G0019272.1 mouse_genomes_project 11 104936581 104940027 - MGP_AJ_P0033015 Cd79b protein_coding protein_coding MGP_AJ_T0033016.1 MGP_AJ_G0019272.1 mouse_genomes_project 11 104936584 104939794 - MGP_AJ_P0033016 Cd79b protein_coding protein_coding MGP_AJ_T0017232.1 MGP_AJ_G0015168.1 mouse_genomes_project 11 92358183 92382080 + B230206L02Rik processed_transcript processed_transcript MGP_AJ_T0017233.1 MGP_AJ_G0015168.1 mouse_genomes_project 11 92358200 92382080 + B230206L02Rik processed_transcript processed_transcript MGP_AJ_T0017234.1 MGP_AJ_G0015168.1 mouse_genomes_project 11 92360374 92363565 + B230206L02Rik processed_transcript processed_transcript MGP_AJ_T0033312.1 MGP_AJ_G0019334.1 mouse_genomes_project 11 113747253 113752342 - MGP_AJ_P0033312 Cd300c protein_coding protein_coding MGP_AJ_T0032362.1 MGP_AJ_G0019137.1 mouse_genomes_project 11 99212147 99214007 - MGP_AJ_P0032362 Hcrt protein_coding protein_coding MGP_AJ_T0032363.1 MGP_AJ_G0019137.1 mouse_genomes_project 11 99212769 99214010 - MGP_AJ_P0032363 Hcrt protein_coding protein_coding MGP_AJ_T0033590.1 MGP_AJ_G0019388.1 mouse_genomes_project 11 115037950 115054819 + MGP_AJ_P0033590 Ten1 protein_coding protein_coding MGP_AJ_T0033591.1 MGP_AJ_G0019388.1 mouse_genomes_project 11 115037993 115045960 + Ten1 protein_coding retained_intron MGP_AJ_T0033592.1 MGP_AJ_G0019388.1 mouse_genomes_project 11 115038054 115054749 + Ten1 protein_coding processed_transcript MGP_AJ_T0033593.1 MGP_AJ_G0019388.1 mouse_genomes_project 11 115050364 115054749 + Ten1 protein_coding processed_transcript MGP_AJ_T0012473.1 MGP_AJ_G0010568.1 mouse_genomes_project 11 3664863 3665849 + processed_pseudogene processed_pseudogene MGP_AJ_T0032900.1 MGP_AJ_G0019244.1 mouse_genomes_project 11 103082251 103130499 - MGP_AJ_P0032900 Cdc27 protein_coding protein_coding MGP_AJ_T0032901.1 MGP_AJ_G0019244.1 mouse_genomes_project 11 103084444 103130408 - MGP_AJ_P0032901 Cdc27 protein_coding protein_coding MGP_AJ_T0032902.1 MGP_AJ_G0019244.1 mouse_genomes_project 11 103087854 103092751 - Cdc27 protein_coding processed_transcript MGP_AJ_T0032903.1 MGP_AJ_G0019244.1 mouse_genomes_project 11 103099726 103130494 - MGP_AJ_P0032903 Cdc27 protein_coding protein_coding MGP_AJ_T0032904.1 MGP_AJ_G0019244.1 mouse_genomes_project 11 103111192 103130636 - Cdc27 protein_coding processed_transcript MGP_AJ_T0012561.1 MGP_AJ_G0010656.1 mouse_genomes_project 11 29954215 29954795 - processed_pseudogene processed_pseudogene MGP_AJ_T0017237.1 MGP_AJ_G0015171.1 mouse_genomes_project 11 94732025 94748296 - Gm11529 processed_transcript processed_transcript MGP_AJ_T0017246.1 MGP_AJ_G0015175.1 mouse_genomes_project 11 95357955 95360702 - Gm11574 processed_transcript processed_transcript MGP_AJ_T0030725.1 MGP_AJ_G0018694.1 mouse_genomes_project 11 74051362 74190381 - Glod4 protein_coding retained_intron MGP_AJ_T0030737.1 MGP_AJ_G0018694.1 mouse_genomes_project 11 74153954 74190369 - MGP_AJ_P0030737 Glod4 protein_coding protein_coding MGP_AJ_T0030741.1 MGP_AJ_G0018694.1 mouse_genomes_project 11 74165886 74190431 - MGP_AJ_P0030741 Glod4 protein_coding protein_coding MGP_AJ_T0030742.1 MGP_AJ_G0018694.1 mouse_genomes_project 11 74165983 74190357 - MGP_AJ_P0030742 Glod4 protein_coding nonsense_mediated_decay MGP_AJ_T0030743.1 MGP_AJ_G0018694.1 mouse_genomes_project 11 74166170 74190165 - MGP_AJ_P0030743 Glod4 protein_coding protein_coding MGP_AJ_T0030744.1 MGP_AJ_G0018694.1 mouse_genomes_project 11 74178898 74190316 - MGP_AJ_P0030744 Glod4 protein_coding protein_coding MGP_AJ_T0030745.1 MGP_AJ_G0018694.1 mouse_genomes_project 11 74179915 74186281 - Glod4 protein_coding retained_intron MGP_AJ_T0030746.1 MGP_AJ_G0018694.1 mouse_genomes_project 11 74180187 74190375 - MGP_AJ_P0030746 Glod4 protein_coding nonsense_mediated_decay MGP_AJ_T0030747.1 MGP_AJ_G0018694.1 mouse_genomes_project 11 74183500 74190344 - MGP_AJ_P0030747 Glod4 protein_coding protein_coding MGP_AJ_T0017236.1 MGP_AJ_G0015170.1 mouse_genomes_project 11 94128594 94130766 + 4833417C18Rik processed_transcript processed_transcript MGP_AJ_T0031595.1 MGP_AJ_G0018910.1 mouse_genomes_project 11 89785893 89788137 - MGP_AJ_P0031595 Kif2b protein_coding protein_coding MGP_AJ_T0012580.1 MGP_AJ_G0010675.1 mouse_genomes_project 11 40831192 40831876 + processed_pseudogene processed_pseudogene MGP_AJ_T0029266.1 MGP_AJ_G0018352.1 mouse_genomes_project 11 56490431 56491042 + MGP_AJ_P0029266 Hist3h2ba protein_coding protein_coding MGP_AJ_T0012606.1 MGP_AJ_G0010701.1 mouse_genomes_project 11 50744328 50744716 - processed_pseudogene processed_pseudogene MGP_AJ_T0028808.1 MGP_AJ_G0018212.1 mouse_genomes_project 11 47483285 47503638 + MGP_AJ_P0028808 Mgat4b protein_coding protein_coding MGP_AJ_T0028809.1 MGP_AJ_G0018212.1 mouse_genomes_project 11 47497873 47507642 + MGP_AJ_P0028809 Mgat4b protein_coding protein_coding MGP_AJ_T0028810.1 MGP_AJ_G0018212.1 mouse_genomes_project 11 47503278 47507642 + MGP_AJ_P0028810 Mgat4b protein_coding nonsense_mediated_decay MGP_AJ_T0028811.1 MGP_AJ_G0018212.1 mouse_genomes_project 11 47503286 47504306 + Mgat4b protein_coding retained_intron MGP_AJ_T0028812.1 MGP_AJ_G0018212.1 mouse_genomes_project 11 47506561 47507456 + Mgat4b protein_coding retained_intron MGP_AJ_T0032071.1 MGP_AJ_G0019026.1 mouse_genomes_project 11 96735401 96738798 - Pgap3 protein_coding processed_transcript MGP_AJ_T0032072.1 MGP_AJ_G0019026.1 mouse_genomes_project 11 96735401 96747245 - MGP_AJ_P0032072 Pgap3 protein_coding protein_coding MGP_AJ_T0032073.1 MGP_AJ_G0019026.1 mouse_genomes_project 11 96736348 96747190 - MGP_AJ_P0032073 Pgap3 protein_coding protein_coding MGP_AJ_T0032074.1 MGP_AJ_G0019026.1 mouse_genomes_project 11 96738047 96747169 - Pgap3 protein_coding processed_transcript MGP_AJ_T0032075.1 MGP_AJ_G0019026.1 mouse_genomes_project 11 96745324 96747192 - Pgap3 protein_coding processed_transcript MGP_AJ_T0032426.1 MGP_AJ_G0019152.1 mouse_genomes_project 11 99624495 99632794 - MGP_AJ_P0032426 Plekhh3 protein_coding nonsense_mediated_decay MGP_AJ_T0032427.1 MGP_AJ_G0019152.1 mouse_genomes_project 11 99624495 99633190 - MGP_AJ_P0032427 Plekhh3 protein_coding protein_coding MGP_AJ_T0032428.1 MGP_AJ_G0019152.1 mouse_genomes_project 11 99624495 99627437 - MGP_AJ_P0032428 Plekhh3 protein_coding nonsense_mediated_decay MGP_AJ_T0032429.1 MGP_AJ_G0019152.1 mouse_genomes_project 11 99624498 99633156 - MGP_AJ_P0032429 Plekhh3 protein_coding protein_coding MGP_AJ_T0032430.1 MGP_AJ_G0019152.1 mouse_genomes_project 11 99625983 99627141 - Plekhh3 protein_coding processed_transcript MGP_AJ_T0032431.1 MGP_AJ_G0019152.1 mouse_genomes_project 11 99629310 99632193 - MGP_AJ_P0032431 Plekhh3 protein_coding protein_coding MGP_AJ_T0012690.1 MGP_AJ_G0010785.1 mouse_genomes_project 11 76552623 76553742 + processed_pseudogene processed_pseudogene MGP_AJ_T0029893.1 MGP_AJ_G0018493.1 mouse_genomes_project 11 67011182 67030063 - MGP_AJ_P0029893 Gucy2e protein_coding protein_coding MGP_AJ_T0029894.1 MGP_AJ_G0018493.1 mouse_genomes_project 11 67011185 67030063 - MGP_AJ_P0029894 Gucy2e protein_coding protein_coding MGP_AJ_T0029895.1 MGP_AJ_G0018493.1 mouse_genomes_project 11 67014223 67030077 - MGP_AJ_P0029895 Gucy2e protein_coding protein_coding MGP_AJ_T0029896.1 MGP_AJ_G0018493.1 mouse_genomes_project 11 67019699 67030063 - Gucy2e protein_coding processed_transcript MGP_AJ_T0033801.1 MGP_AJ_G0019432.1 mouse_genomes_project 11 117186526 117241810 - MGP_AJ_P0033801 Timp2 protein_coding protein_coding MGP_AJ_T0009760.1 MGP_AJ_G0007882.1 mouse_genomes_project 11 105555242 105555346 - Gm27322 miRNA miRNA MGP_AJ_T0030497.1 MGP_AJ_G0018625.1 mouse_genomes_project 11 71107900 71134278 + MGP_AJ_P0030497 Shpk protein_coding protein_coding MGP_AJ_T0030498.1 MGP_AJ_G0018625.1 mouse_genomes_project 11 71107900 71134269 + MGP_AJ_P0030498 Shpk protein_coding nonsense_mediated_decay MGP_AJ_T0006175.1 MGP_AJ_G0005155.1 mouse_genomes_project 11 11473270 11511324 - 1700046C09Rik lincRNA lincRNA MGP_AJ_T0030189.1 MGP_AJ_G0018557.1 mouse_genomes_project 11 68069978 68071619 - MGP_AJ_P0030189 Rnasek protein_coding nonsense_mediated_decay MGP_AJ_T0030190.1 MGP_AJ_G0018557.1 mouse_genomes_project 11 68069978 68071619 - MGP_AJ_P0030190 Rnasek protein_coding protein_coding MGP_AJ_T0030191.1 MGP_AJ_G0018557.1 mouse_genomes_project 11 68069981 68070913 - MGP_AJ_P0030191 Rnasek protein_coding protein_coding MGP_AJ_T0029065.1 MGP_AJ_G0018280.1 mouse_genomes_project 11 51560426 51577673 + MGP_AJ_P0029065 P4ha2 protein_coding protein_coding MGP_AJ_T0029066.1 MGP_AJ_G0018280.1 mouse_genomes_project 11 51561255 51595370 + MGP_AJ_P0029066 P4ha2 protein_coding protein_coding MGP_AJ_T0029067.1 MGP_AJ_G0018280.1 mouse_genomes_project 11 51561294 51591480 + P4ha2 protein_coding retained_intron MGP_AJ_T0029068.1 MGP_AJ_G0018280.1 mouse_genomes_project 11 51561294 51595370 + MGP_AJ_P0029068 P4ha2 protein_coding protein_coding MGP_AJ_T0029069.1 MGP_AJ_G0018280.1 mouse_genomes_project 11 51561306 51575124 + P4ha2 protein_coding retained_intron MGP_AJ_T0029070.1 MGP_AJ_G0018280.1 mouse_genomes_project 11 51561306 51595380 + MGP_AJ_P0029070 P4ha2 protein_coding protein_coding MGP_AJ_T0029071.1 MGP_AJ_G0018280.1 mouse_genomes_project 11 51561311 51573803 + MGP_AJ_P0029071 P4ha2 protein_coding protein_coding MGP_AJ_T0029072.1 MGP_AJ_G0018280.1 mouse_genomes_project 11 51561322 51575052 + MGP_AJ_P0029072 P4ha2 protein_coding protein_coding MGP_AJ_T0029073.1 MGP_AJ_G0018280.1 mouse_genomes_project 11 51561399 51575063 + MGP_AJ_P0029073 P4ha2 protein_coding nonsense_mediated_decay MGP_AJ_T0029074.1 MGP_AJ_G0018280.1 mouse_genomes_project 11 51561576 51575063 + MGP_AJ_P0029074 P4ha2 protein_coding protein_coding MGP_AJ_T0029075.1 MGP_AJ_G0018280.1 mouse_genomes_project 11 51570808 51577763 + MGP_AJ_P0029075 P4ha2 protein_coding protein_coding MGP_AJ_T0029076.1 MGP_AJ_G0018280.1 mouse_genomes_project 11 51574509 51583735 + MGP_AJ_P0029076 P4ha2 protein_coding nonsense_mediated_decay MGP_AJ_T0029077.1 MGP_AJ_G0018280.1 mouse_genomes_project 11 51576691 51577763 + P4ha2 protein_coding processed_transcript MGP_AJ_T0029078.1 MGP_AJ_G0018280.1 mouse_genomes_project 11 51588390 51589780 + P4ha2 protein_coding retained_intron MGP_AJ_T0029079.1 MGP_AJ_G0018280.1 mouse_genomes_project 11 51591410 51595383 + P4ha2 protein_coding retained_intron MGP_AJ_T0012616.1 MGP_AJ_G0010711.1 mouse_genomes_project 11 52208014 52208764 - processed_pseudogene processed_pseudogene MGP_AJ_T0032679.1 MGP_AJ_G0019200.1 mouse_genomes_project 11 100876912 100893387 - MGP_AJ_P0032679 Slc4a1 protein_coding protein_coding MGP_AJ_T0032680.1 MGP_AJ_G0019200.1 mouse_genomes_project 11 100887184 100888671 - Slc4a1 protein_coding processed_transcript MGP_AJ_T0032681.1 MGP_AJ_G0019200.1 mouse_genomes_project 11 100888264 100891811 - Slc4a1 protein_coding processed_transcript MGP_AJ_T0032682.1 MGP_AJ_G0019200.1 mouse_genomes_project 11 100888297 100893354 - Slc4a1 protein_coding processed_transcript MGP_AJ_T0032683.1 MGP_AJ_G0019200.1 mouse_genomes_project 11 100889486 100894310 - Slc4a1 protein_coding processed_transcript MGP_AJ_T0033755.1 MGP_AJ_G0019420.1 mouse_genomes_project 11 116680673 116712252 + MGP_AJ_P0033755 Gm20708 protein_coding protein_coding MGP_AJ_T0028165.1 MGP_AJ_G0018045.1 mouse_genomes_project 11 18248981 18298322 - MGP_AJ_P0028165 Ugp2 protein_coding protein_coding MGP_AJ_T0028166.1 MGP_AJ_G0018045.1 mouse_genomes_project 11 18249772 18257730 - Ugp2 protein_coding processed_transcript MGP_AJ_T0028167.1 MGP_AJ_G0018045.1 mouse_genomes_project 11 18249788 18251351 - Ugp2 protein_coding processed_transcript MGP_AJ_T0030709.1 MGP_AJ_G0018690.1 mouse_genomes_project 11 73755414 73862552 - MGP_AJ_P0030709 Rph3al protein_coding protein_coding MGP_AJ_T0030710.1 MGP_AJ_G0018690.1 mouse_genomes_project 11 73756552 73836020 - MGP_AJ_P0030710 Rph3al protein_coding protein_coding MGP_AJ_T0030711.1 MGP_AJ_G0018690.1 mouse_genomes_project 11 73824040 73850778 - MGP_AJ_P0030711 Rph3al protein_coding protein_coding MGP_AJ_T0030712.1 MGP_AJ_G0018690.1 mouse_genomes_project 11 73825055 73862511 - MGP_AJ_P0030712 Rph3al protein_coding protein_coding MGP_AJ_T0030713.1 MGP_AJ_G0018690.1 mouse_genomes_project 11 73830888 73863243 - MGP_AJ_P0030713 Rph3al protein_coding protein_coding MGP_AJ_T0029731.1 MGP_AJ_G0018458.1 mouse_genomes_project 11 65038818 65071661 + MGP_AJ_P0029731 Myh8 protein_coding protein_coding MGP_AJ_T0029732.1 MGP_AJ_G0018458.1 mouse_genomes_project 11 65039112 65057582 + Myh8 protein_coding retained_intron MGP_AJ_T0029733.1 MGP_AJ_G0018458.1 mouse_genomes_project 11 65039112 65043838 + MGP_AJ_P0029733 Myh8 protein_coding protein_coding MGP_AJ_T0029734.1 MGP_AJ_G0018458.1 mouse_genomes_project 11 65041681 65054515 + Myh8 protein_coding retained_intron MGP_AJ_T0028021.1 MGP_AJ_G0018011.1 mouse_genomes_project 11 5988201 6011540 - MGP_AJ_P0028021 Sun3 protein_coding protein_coding MGP_AJ_T0028022.1 MGP_AJ_G0018011.1 mouse_genomes_project 11 5988201 6023145 - MGP_AJ_P0028022 Sun3 protein_coding protein_coding MGP_AJ_T0006284.1 MGP_AJ_G0005248.1 mouse_genomes_project 11 76413741 76414536 + Gm11195 lincRNA lincRNA MGP_AJ_T0030757.1 MGP_AJ_G0018701.1 mouse_genomes_project 11 74362520 74456280 - MGP_AJ_P0030757 Abr protein_coding protein_coding MGP_AJ_T0030758.1 MGP_AJ_G0018701.1 mouse_genomes_project 11 74362520 74512318 - MGP_AJ_P0030758 Abr protein_coding protein_coding MGP_AJ_T0030759.1 MGP_AJ_G0018701.1 mouse_genomes_project 11 74362521 74455857 - MGP_AJ_P0030759 Abr protein_coding protein_coding MGP_AJ_T0030760.1 MGP_AJ_G0018701.1 mouse_genomes_project 11 74362537 74414256 - MGP_AJ_P0030760 Abr protein_coding protein_coding MGP_AJ_T0030761.1 MGP_AJ_G0018701.1 mouse_genomes_project 11 74364894 74442531 - MGP_AJ_P0030761 Abr protein_coding protein_coding MGP_AJ_T0030762.1 MGP_AJ_G0018701.1 mouse_genomes_project 11 74368839 74383012 - Abr protein_coding processed_transcript MGP_AJ_T0030763.1 MGP_AJ_G0018701.1 mouse_genomes_project 11 74400367 74414096 - MGP_AJ_P0030763 Abr protein_coding nonsense_mediated_decay MGP_AJ_T0030764.1 MGP_AJ_G0018701.1 mouse_genomes_project 11 74404297 74442080 - Abr protein_coding retained_intron MGP_AJ_T0030765.1 MGP_AJ_G0018701.1 mouse_genomes_project 11 74410079 74441016 - MGP_AJ_P0030765 Abr protein_coding protein_coding MGP_AJ_T0030766.1 MGP_AJ_G0018701.1 mouse_genomes_project 11 74425479 74518534 - MGP_AJ_P0030766 Abr protein_coding protein_coding MGP_AJ_T0030767.1 MGP_AJ_G0018701.1 mouse_genomes_project 11 74425533 74562999 - MGP_AJ_P0030767 Abr protein_coding protein_coding MGP_AJ_T0030768.1 MGP_AJ_G0018701.1 mouse_genomes_project 11 74425589 74554082 - MGP_AJ_P0030768 Abr protein_coding protein_coding MGP_AJ_T0030769.1 MGP_AJ_G0018701.1 mouse_genomes_project 11 74433079 74442059 - Abr protein_coding processed_transcript MGP_AJ_T0028887.1 MGP_AJ_G0018235.1 mouse_genomes_project 11 48592614 48604511 + MGP_AJ_P0028887 Clk4 protein_coding protein_coding MGP_AJ_T0028888.1 MGP_AJ_G0018235.1 mouse_genomes_project 11 48592614 48602904 + MGP_AJ_P0028888 Clk4 protein_coding nonsense_mediated_decay MGP_AJ_T0028889.1 MGP_AJ_G0018235.1 mouse_genomes_project 11 48593998 48612172 + MGP_AJ_P0028889 Clk4 protein_coding protein_coding MGP_AJ_T0028890.1 MGP_AJ_G0018235.1 mouse_genomes_project 11 48594034 48606144 + MGP_AJ_P0028890 Clk4 protein_coding nonsense_mediated_decay MGP_AJ_T0028891.1 MGP_AJ_G0018235.1 mouse_genomes_project 11 48594046 48598389 + Clk4 protein_coding retained_intron MGP_AJ_T0028892.1 MGP_AJ_G0018235.1 mouse_genomes_project 11 48594048 48603249 + Clk4 protein_coding retained_intron MGP_AJ_T0028893.1 MGP_AJ_G0018235.1 mouse_genomes_project 11 48594053 48604507 + MGP_AJ_P0028893 Clk4 protein_coding nonsense_mediated_decay MGP_AJ_T0028894.1 MGP_AJ_G0018235.1 mouse_genomes_project 11 48594058 48602945 + Clk4 protein_coding retained_intron MGP_AJ_T0028895.1 MGP_AJ_G0018235.1 mouse_genomes_project 11 48594070 48612174 + MGP_AJ_P0028895 Clk4 protein_coding protein_coding MGP_AJ_T0028896.1 MGP_AJ_G0018235.1 mouse_genomes_project 11 48602883 48608094 + Clk4 protein_coding retained_intron MGP_AJ_T0028897.1 MGP_AJ_G0018235.1 mouse_genomes_project 11 48604335 48612172 + MGP_AJ_P0028897 Clk4 protein_coding protein_coding MGP_AJ_T0028898.1 MGP_AJ_G0018235.1 mouse_genomes_project 11 48604496 48607122 + Clk4 protein_coding retained_intron MGP_AJ_T0028899.1 MGP_AJ_G0018235.1 mouse_genomes_project 11 48605792 48606397 + Clk4 protein_coding retained_intron MGP_AJ_T0028900.1 MGP_AJ_G0018235.1 mouse_genomes_project 11 48610516 48611608 + Clk4 protein_coding retained_intron MGP_AJ_T0028550.1 MGP_AJ_G0018137.1 mouse_genomes_project 11 39037353 39133455 - MGP_AJ_P0028550 Gabrg2 protein_coding protein_coding MGP_AJ_T0028551.1 MGP_AJ_G0018137.1 mouse_genomes_project 11 39038843 39133129 - MGP_AJ_P0028551 Gabrg2 protein_coding protein_coding MGP_AJ_T0028552.1 MGP_AJ_G0018137.1 mouse_genomes_project 11 39038845 39043757 - Gabrg2 protein_coding retained_intron MGP_AJ_T0028553.1 MGP_AJ_G0018137.1 mouse_genomes_project 11 39041703 39132953 - MGP_AJ_P0028553 Gabrg2 protein_coding protein_coding MGP_AJ_T0033992.1 MGP_AJ_G0019469.1 mouse_genomes_project 11 119364917 119366380 - MGP_AJ_P0033992 Oxld1 protein_coding protein_coding MGP_AJ_T0033993.1 MGP_AJ_G0019469.1 mouse_genomes_project 11 119365196 119366248 - MGP_AJ_P0033993 Oxld1 protein_coding protein_coding MGP_AJ_T0012546.1 MGP_AJ_G0010641.1 mouse_genomes_project 11 26545522 26546442 - processed_pseudogene processed_pseudogene MGP_AJ_T0099375.1 MGP_AJ_G0037341.1 mouse_genomes_project 11 100138059 100138250 + Gm24950 snRNA snRNA MGP_AJ_T0102242.1 MGP_AJ_G0039985.1 mouse_genomes_project 11 72022141 72028320 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0031553.1 MGP_AJ_G0018897.1 mouse_genomes_project 11 87225015 87245786 + MGP_AJ_P0031553 Trim25 protein_coding protein_coding MGP_AJ_T0031554.1 MGP_AJ_G0018897.1 mouse_genomes_project 11 87225015 87245786 + MGP_AJ_P0031554 Trim25 protein_coding protein_coding MGP_AJ_T0031555.1 MGP_AJ_G0018897.1 mouse_genomes_project 11 87225015 87239222 + MGP_AJ_P0031555 Trim25 protein_coding protein_coding MGP_AJ_T0000849.1 MGP_AJ_G0000784.1 mouse_genomes_project 11 94283777 94284602 - TEC TEC MGP_AJ_T0003358.1 MGP_AJ_G0003093.1 mouse_genomes_project 11 119397745 119400735 - Gm11788 antisense antisense MGP_AJ_T0029826.1 MGP_AJ_G0018480.1 mouse_genomes_project 11 66762192 66764894 - Rangrf protein_coding processed_transcript MGP_AJ_T0029827.1 MGP_AJ_G0018480.1 mouse_genomes_project 11 66762192 66762721 - Rangrf protein_coding processed_transcript MGP_AJ_T0029828.1 MGP_AJ_G0018480.1 mouse_genomes_project 11 66762192 66763498 - Rangrf protein_coding processed_transcript MGP_AJ_T0029829.1 MGP_AJ_G0018480.1 mouse_genomes_project 11 66762192 66763552 - MGP_AJ_P0029829 Rangrf protein_coding protein_coding MGP_AJ_T0029830.1 MGP_AJ_G0018480.1 mouse_genomes_project 11 66762195 66763052 - Rangrf protein_coding processed_transcript MGP_AJ_T0029831.1 MGP_AJ_G0018480.1 mouse_genomes_project 11 66762196 66763154 - Rangrf protein_coding processed_transcript MGP_AJ_T0029832.1 MGP_AJ_G0018480.1 mouse_genomes_project 11 66762203 66763077 - Rangrf protein_coding processed_transcript MGP_AJ_T0029833.1 MGP_AJ_G0018480.1 mouse_genomes_project 11 66762206 66762905 - Rangrf protein_coding processed_transcript MGP_AJ_T0012756.1 MGP_AJ_G0010851.1 mouse_genomes_project 11 103393260 103394335 + processed_pseudogene processed_pseudogene MGP_AJ_T0033665.1 MGP_AJ_G0019403.1 mouse_genomes_project 11 115508382 115523747 + MGP_AJ_P0033665 protein_coding protein_coding MGP_AJ_T0033666.1 MGP_AJ_G0019403.1 mouse_genomes_project 11 115508382 115523452 + MGP_AJ_P0033666 protein_coding nonsense_mediated_decay MGP_AJ_T0033667.1 MGP_AJ_G0019403.1 mouse_genomes_project 11 115508703 115523749 + MGP_AJ_P0033667 protein_coding protein_coding MGP_AJ_T0033668.1 MGP_AJ_G0019403.1 mouse_genomes_project 11 115512048 115523747 + MGP_AJ_P0033668 protein_coding protein_coding MGP_AJ_T0033669.1 MGP_AJ_G0019403.1 mouse_genomes_project 11 115512096 115515083 + protein_coding retained_intron MGP_AJ_T0011799.1 MGP_AJ_G0009919.1 mouse_genomes_project 11 72218770 72219742 + MGP_AJ_P0011799 Olfr409-ps1 polymorphic_pseudogene polymorphic_pseudogene MGP_AJ_T0033283.1 MGP_AJ_G0019328.1 mouse_genomes_project 11 113543369 113564250 + Kif19a protein_coding processed_transcript MGP_AJ_T0033284.1 MGP_AJ_G0019328.1 mouse_genomes_project 11 113543369 113564250 + Kif19a protein_coding processed_transcript MGP_AJ_T0033285.1 MGP_AJ_G0019328.1 mouse_genomes_project 11 113543369 113566210 + MGP_AJ_P0033285 Kif19a protein_coding protein_coding MGP_AJ_T0033286.1 MGP_AJ_G0019328.1 mouse_genomes_project 11 113543370 113568652 + MGP_AJ_P0033286 Kif19a protein_coding protein_coding MGP_AJ_T0033287.1 MGP_AJ_G0019328.1 mouse_genomes_project 11 113562729 113563638 + Kif19a protein_coding retained_intron MGP_AJ_T0033288.1 MGP_AJ_G0019328.1 mouse_genomes_project 11 113565977 113568817 + MGP_AJ_P0033288 Kif19a protein_coding protein_coding MGP_AJ_T0033289.1 MGP_AJ_G0019328.1 mouse_genomes_project 11 113566019 113567409 + Kif19a protein_coding retained_intron MGP_AJ_T0003226.1 MGP_AJ_G0002985.1 mouse_genomes_project 11 72946689 72949525 - Gm12333 antisense antisense MGP_AJ_T0033317.1 MGP_AJ_G0019338.1 mouse_genomes_project 11 113818586 113824403 - MGP_AJ_P0033317 protein_coding protein_coding MGP_AJ_T0028843.1 MGP_AJ_G0018218.1 mouse_genomes_project 11 47671596 47717310 - MGP_AJ_P0028843 Rufy1 protein_coding protein_coding MGP_AJ_T0028844.1 MGP_AJ_G0018218.1 mouse_genomes_project 11 47671605 47717317 - MGP_AJ_P0028844 Rufy1 protein_coding unknown_likely_coding MGP_AJ_T0028845.1 MGP_AJ_G0018218.1 mouse_genomes_project 11 47671683 47698734 - Rufy1 protein_coding processed_transcript MGP_AJ_T0028846.1 MGP_AJ_G0018218.1 mouse_genomes_project 11 47691352 47708176 - Rufy1 protein_coding processed_transcript MGP_AJ_T0009720.1 MGP_AJ_G0007842.1 mouse_genomes_project 11 76029548 76029620 + Mir451a miRNA miRNA MGP_AJ_T0032419.1 MGP_AJ_G0019149.1 mouse_genomes_project 11 99553599 99578286 - Fam134c protein_coding processed_transcript MGP_AJ_T0032420.1 MGP_AJ_G0019149.1 mouse_genomes_project 11 99553790 99578286 - MGP_AJ_P0032420 Fam134c protein_coding protein_coding MGP_AJ_T0032421.1 MGP_AJ_G0019149.1 mouse_genomes_project 11 99553796 99578100 - MGP_AJ_P0032421 Fam134c protein_coding protein_coding MGP_AJ_T0032422.1 MGP_AJ_G0019149.1 mouse_genomes_project 11 99555277 99578158 - Fam134c protein_coding processed_transcript MGP_AJ_T0032423.1 MGP_AJ_G0019149.1 mouse_genomes_project 11 99555860 99578286 - Fam134c protein_coding processed_transcript MGP_AJ_T0029308.1 MGP_AJ_G0018367.1 mouse_genomes_project 11 57016754 57025211 + MGP_AJ_P0029308 Jmjd4 protein_coding protein_coding MGP_AJ_T0029309.1 MGP_AJ_G0018367.1 mouse_genomes_project 11 57016754 57025305 + MGP_AJ_P0029309 Jmjd4 protein_coding nonsense_mediated_decay MGP_AJ_T0029310.1 MGP_AJ_G0018367.1 mouse_genomes_project 11 57016754 57025211 + MGP_AJ_P0029310 Jmjd4 protein_coding protein_coding MGP_AJ_T0029311.1 MGP_AJ_G0018367.1 mouse_genomes_project 11 57016830 57022831 + Jmjd4 protein_coding retained_intron MGP_AJ_T0028937.1 MGP_AJ_G0018246.1 mouse_genomes_project 11 49151220 49186768 - MGP_AJ_P0028937 Jade2 protein_coding protein_coding MGP_AJ_T0028938.1 MGP_AJ_G0018246.1 mouse_genomes_project 11 49180017 49194852 - Jade2 protein_coding processed_transcript MGP_AJ_T0031439.1 MGP_AJ_G0018871.1 mouse_genomes_project 11 85578177 85739933 + MGP_AJ_P0031439 Tex14 protein_coding protein_coding MGP_AJ_T0031440.1 MGP_AJ_G0018871.1 mouse_genomes_project 11 85603092 85663148 + MGP_AJ_P0031440 Tex14 protein_coding protein_coding MGP_AJ_T0031441.1 MGP_AJ_G0018871.1 mouse_genomes_project 11 85720337 85739067 + MGP_AJ_P0031441 Tex14 protein_coding protein_coding MGP_AJ_T0031442.1 MGP_AJ_G0018871.1 mouse_genomes_project 11 85722617 85739929 + MGP_AJ_P0031442 Tex14 protein_coding protein_coding MGP_AJ_T0031443.1 MGP_AJ_G0018871.1 mouse_genomes_project 11 85726760 85739776 + Tex14 protein_coding processed_transcript MGP_AJ_T0000837.1 MGP_AJ_G0000772.1 mouse_genomes_project 11 6685013 6685376 - TEC TEC MGP_AJ_T0012488.1 MGP_AJ_G0010583.1 mouse_genomes_project 11 11511412 11511961 + processed_pseudogene processed_pseudogene MGP_AJ_T0032842.1 MGP_AJ_G0019230.1 mouse_genomes_project 11 101882658 101913743 - MGP_AJ_P0032842 Arhgap27 protein_coding protein_coding MGP_AJ_T0032843.1 MGP_AJ_G0019230.1 mouse_genomes_project 11 101882659 101916529 - Arhgap27 protein_coding retained_intron MGP_AJ_T0032844.1 MGP_AJ_G0019230.1 mouse_genomes_project 11 101882661 101896678 - MGP_AJ_P0032844 Arhgap27 protein_coding protein_coding MGP_AJ_T0032845.1 MGP_AJ_G0019230.1 mouse_genomes_project 11 101884327 101885268 - Arhgap27 protein_coding retained_intron MGP_AJ_T0032846.1 MGP_AJ_G0019230.1 mouse_genomes_project 11 101884390 101884557 - Arhgap27 protein_coding processed_transcript MGP_AJ_T0032847.1 MGP_AJ_G0019230.1 mouse_genomes_project 11 101884626 101885247 - Arhgap27 protein_coding retained_intron MGP_AJ_T0032848.1 MGP_AJ_G0019230.1 mouse_genomes_project 11 101886425 101891689 - Arhgap27 protein_coding retained_intron MGP_AJ_T0032849.1 MGP_AJ_G0019230.1 mouse_genomes_project 11 101888944 101891273 - Arhgap27 protein_coding retained_intron MGP_AJ_T0032850.1 MGP_AJ_G0019230.1 mouse_genomes_project 11 101891198 101909204 - MGP_AJ_P0032850 Arhgap27 protein_coding protein_coding MGP_AJ_T0032851.1 MGP_AJ_G0019230.1 mouse_genomes_project 11 101892104 101909218 - MGP_AJ_P0032851 Arhgap27 protein_coding protein_coding MGP_AJ_T0032852.1 MGP_AJ_G0019230.1 mouse_genomes_project 11 101912581 101916301 - MGP_AJ_P0032852 Arhgap27 protein_coding protein_coding MGP_AJ_T0012601.1 MGP_AJ_G0010696.1 mouse_genomes_project 11 49544668 49544855 + processed_pseudogene processed_pseudogene MGP_AJ_T0028708.1 MGP_AJ_G0018182.1 mouse_genomes_project 11 46223496 46249062 - MGP_AJ_P0028708 protein_coding protein_coding MGP_AJ_T0033035.1 MGP_AJ_G0019277.1 mouse_genomes_project 11 105128692 105240044 - MGP_AJ_P0033035 Tex2 protein_coding protein_coding MGP_AJ_T0033036.1 MGP_AJ_G0019277.1 mouse_genomes_project 11 105171092 105205975 - MGP_AJ_P0033036 Tex2 protein_coding protein_coding MGP_AJ_T0033037.1 MGP_AJ_G0019277.1 mouse_genomes_project 11 105195021 105240537 - MGP_AJ_P0033037 Tex2 protein_coding protein_coding MGP_AJ_T0033038.1 MGP_AJ_G0019277.1 mouse_genomes_project 11 105195406 105207462 - MGP_AJ_P0033038 Tex2 protein_coding protein_coding MGP_AJ_T0028709.1 MGP_AJ_G0018183.1 mouse_genomes_project 11 46248552 46341516 + MGP_AJ_P0028709 Olfr56 protein_coding protein_coding MGP_AJ_T0028710.1 MGP_AJ_G0018183.1 mouse_genomes_project 11 46248552 46341516 + MGP_AJ_P0028710 Olfr56 protein_coding protein_coding MGP_AJ_T0028711.1 MGP_AJ_G0018183.1 mouse_genomes_project 11 46248552 46341516 + MGP_AJ_P0028711 Olfr56 protein_coding protein_coding MGP_AJ_T0028716.1 MGP_AJ_G0018183.1 mouse_genomes_project 11 46290640 46332588 + Olfr56 protein_coding retained_intron MGP_AJ_T0028718.1 MGP_AJ_G0018183.1 mouse_genomes_project 11 46290658 46341449 + MGP_AJ_P0028718 Olfr56 protein_coding protein_coding MGP_AJ_T0028721.1 MGP_AJ_G0018183.1 mouse_genomes_project 11 46324179 46341448 + MGP_AJ_P0028721 Olfr56 protein_coding protein_coding MGP_AJ_T0033718.1 MGP_AJ_G0019413.1 mouse_genomes_project 11 115955252 115993001 + Sec14l1 protein_coding retained_intron MGP_AJ_T0033719.1 MGP_AJ_G0019413.1 mouse_genomes_project 11 115955256 116001149 + MGP_AJ_P0033719 Sec14l1 protein_coding protein_coding MGP_AJ_T0033720.1 MGP_AJ_G0019413.1 mouse_genomes_project 11 115955322 115999443 + MGP_AJ_P0033720 Sec14l1 protein_coding protein_coding MGP_AJ_T0033721.1 MGP_AJ_G0019413.1 mouse_genomes_project 11 115955322 116001152 + MGP_AJ_P0033721 Sec14l1 protein_coding protein_coding MGP_AJ_T0033722.1 MGP_AJ_G0019413.1 mouse_genomes_project 11 115955336 115968908 + Sec14l1 protein_coding processed_transcript MGP_AJ_T0033723.1 MGP_AJ_G0019413.1 mouse_genomes_project 11 115996955 115998364 + Sec14l1 protein_coding retained_intron MGP_AJ_T0031810.1 MGP_AJ_G0018960.1 mouse_genomes_project 11 94135530 94191874 - MGP_AJ_P0031810 B4galnt2 protein_coding protein_coding MGP_AJ_T0028961.1 MGP_AJ_G0018250.1 mouse_genomes_project 11 49439728 49469883 + MGP_AJ_P0028961 Ppp2ca protein_coding protein_coding MGP_AJ_T0028962.1 MGP_AJ_G0018250.1 mouse_genomes_project 11 49460318 49461268 + Ppp2ca protein_coding retained_intron MGP_AJ_T0012736.1 MGP_AJ_G0010831.1 mouse_genomes_project 11 96301712 96302156 + processed_pseudogene processed_pseudogene MGP_AJ_T0006200.1 MGP_AJ_G0005178.1 mouse_genomes_project 11 22146672 22290605 + 4933427E13Rik lincRNA lincRNA MGP_AJ_T0006202.1 MGP_AJ_G0005178.1 mouse_genomes_project 11 22250487 22290609 + 4933427E13Rik lincRNA lincRNA MGP_AJ_T0006203.1 MGP_AJ_G0005178.1 mouse_genomes_project 11 22250516 22255178 + 4933427E13Rik lincRNA lincRNA MGP_AJ_T0006204.1 MGP_AJ_G0005178.1 mouse_genomes_project 11 22254416 22281665 + 4933427E13Rik lincRNA lincRNA MGP_AJ_T0031333.1 MGP_AJ_G0018845.1 mouse_genomes_project 11 83148843 83304489 - MGP_AJ_P0031333 Usp32 protein_coding protein_coding MGP_AJ_T0031334.1 MGP_AJ_G0018845.1 mouse_genomes_project 11 83150048 83194294 - MGP_AJ_P0031334 Usp32 protein_coding nonsense_mediated_decay MGP_AJ_T0031335.1 MGP_AJ_G0018845.1 mouse_genomes_project 11 83150671 83153138 - MGP_AJ_P0031335 Usp32 protein_coding protein_coding MGP_AJ_T0031336.1 MGP_AJ_G0018845.1 mouse_genomes_project 11 83192330 83205070 - MGP_AJ_P0031336 Usp32 protein_coding protein_coding MGP_AJ_T0031337.1 MGP_AJ_G0018845.1 mouse_genomes_project 11 83201619 83207700 - MGP_AJ_P0031337 Usp32 protein_coding nonsense_mediated_decay MGP_AJ_T0031338.1 MGP_AJ_G0018845.1 mouse_genomes_project 11 83213232 83216797 - Usp32 protein_coding retained_intron MGP_AJ_T0031339.1 MGP_AJ_G0018845.1 mouse_genomes_project 11 83241871 83304612 - Usp32 protein_coding processed_transcript MGP_AJ_T0031340.1 MGP_AJ_G0018845.1 mouse_genomes_project 11 83264508 83304419 - Usp32 protein_coding processed_transcript MGP_AJ_T0031341.1 MGP_AJ_G0018845.1 mouse_genomes_project 11 83267974 83304380 - Usp32 protein_coding retained_intron MGP_AJ_T0003365.1 MGP_AJ_G0003096.1 mouse_genomes_project 11 119569102 119571761 + Notumos antisense antisense MGP_AJ_T0029080.1 MGP_AJ_G0018281.1 mouse_genomes_project 11 51708673 51711091 - MGP_AJ_P0029080 Csf2 protein_coding protein_coding MGP_AJ_T0033406.1 MGP_AJ_G0019359.1 mouse_genomes_project 11 114299312 114300706 - MGP_AJ_P0033406 Nt5c protein_coding protein_coding MGP_AJ_T0033407.1 MGP_AJ_G0019359.1 mouse_genomes_project 11 114299312 114300753 - MGP_AJ_P0033407 Nt5c protein_coding protein_coding MGP_AJ_T0033408.1 MGP_AJ_G0019359.1 mouse_genomes_project 11 114299530 114300742 - Nt5c protein_coding retained_intron MGP_AJ_T0033409.1 MGP_AJ_G0019359.1 mouse_genomes_project 11 114299592 114300095 - Nt5c protein_coding retained_intron MGP_AJ_T0033410.1 MGP_AJ_G0019359.1 mouse_genomes_project 11 114299663 114300264 - Nt5c protein_coding retained_intron MGP_AJ_T0011310.1 MGP_AJ_G0009432.1 mouse_genomes_project 11 93217910 93218026 + Gm24877 misc_RNA misc_RNA MGP_AJ_T0029709.1 MGP_AJ_G0018452.1 mouse_genomes_project 11 64791989 64806661 - MGP_AJ_P0029709 Adprm protein_coding nonsense_mediated_decay MGP_AJ_T0029710.1 MGP_AJ_G0018452.1 mouse_genomes_project 11 64792125 64806637 - MGP_AJ_P0029710 Adprm protein_coding protein_coding MGP_AJ_T0029711.1 MGP_AJ_G0018452.1 mouse_genomes_project 11 64792353 64794612 - Adprm protein_coding processed_transcript MGP_AJ_T0029712.1 MGP_AJ_G0018452.1 mouse_genomes_project 11 64795780 64806652 - Adprm protein_coding processed_transcript MGP_AJ_T0029713.1 MGP_AJ_G0018452.1 mouse_genomes_project 11 64795821 64806658 - Adprm protein_coding processed_transcript MGP_AJ_T0029714.1 MGP_AJ_G0018452.1 mouse_genomes_project 11 64795966 64806656 - Adprm protein_coding processed_transcript MGP_AJ_T0031568.1 MGP_AJ_G0018905.1 mouse_genomes_project 11 88402446 88463602 + Mmd protein_coding processed_transcript MGP_AJ_T0031569.1 MGP_AJ_G0018905.1 mouse_genomes_project 11 88402446 88465961 + Mmd protein_coding processed_transcript MGP_AJ_T0031570.1 MGP_AJ_G0018905.1 mouse_genomes_project 11 88402448 88442789 + Mmd protein_coding processed_transcript MGP_AJ_T0031571.1 MGP_AJ_G0018905.1 mouse_genomes_project 11 88464161 88483031 + MGP_AJ_P0031571 Mmd protein_coding protein_coding MGP_AJ_T0031572.1 MGP_AJ_G0018905.1 mouse_genomes_project 11 88464181 88493226 + MGP_AJ_P0031572 Mmd protein_coding protein_coding MGP_AJ_T0011306.1 MGP_AJ_G0009428.1 mouse_genomes_project 11 81992752 81993060 + Gm23211 misc_RNA misc_RNA MGP_AJ_T0100610.1 MGP_AJ_G0038576.1 mouse_genomes_project 11 74993165 74993286 + Gm22772 snoRNA snoRNA MGP_AJ_T0100583.1 MGP_AJ_G0038549.1 mouse_genomes_project 11 31960137 31960264 - Gm22022 snoRNA snoRNA MGP_AJ_T0030434.1 MGP_AJ_G0018609.1 mouse_genomes_project 11 70343599 70382467 - MGP_AJ_P0030434 Spns2 protein_coding protein_coding MGP_AJ_T0030435.1 MGP_AJ_G0018609.1 mouse_genomes_project 11 70343603 70346503 - Spns2 protein_coding retained_intron MGP_AJ_T0030436.1 MGP_AJ_G0018609.1 mouse_genomes_project 11 70344569 70348312 - Spns2 protein_coding processed_transcript MGP_AJ_T0030437.1 MGP_AJ_G0018609.1 mouse_genomes_project 11 70344693 70348583 - MGP_AJ_P0030437 Spns2 protein_coding protein_coding MGP_AJ_T0030438.1 MGP_AJ_G0018609.1 mouse_genomes_project 11 70344802 70346080 - Spns2 protein_coding processed_transcript MGP_AJ_T0030439.1 MGP_AJ_G0018609.1 mouse_genomes_project 11 70350990 70366989 - Spns2 protein_coding processed_transcript MGP_AJ_T0029941.1 MGP_AJ_G0018504.1 mouse_genomes_project 11 67365728 67371839 - MGP_AJ_P0029941 Efnb3 protein_coding protein_coding MGP_AJ_T0031684.1 MGP_AJ_G0018926.1 mouse_genomes_project 11 92722336 92732757 - MGP_AJ_P0031684 Epn3 protein_coding protein_coding MGP_AJ_T0031685.1 MGP_AJ_G0018926.1 mouse_genomes_project 11 92723856 92732692 - Epn3 protein_coding processed_transcript MGP_AJ_T0031686.1 MGP_AJ_G0018926.1 mouse_genomes_project 11 92723894 92729286 - MGP_AJ_P0031686 Epn3 protein_coding unknown_likely_coding MGP_AJ_T0031687.1 MGP_AJ_G0018926.1 mouse_genomes_project 11 92728745 92730997 - Epn3 protein_coding processed_transcript MGP_AJ_T0031688.1 MGP_AJ_G0018926.1 mouse_genomes_project 11 92729109 92731903 - Epn3 protein_coding processed_transcript MGP_AJ_T0028730.1 MGP_AJ_G0018192.1 mouse_genomes_project 11 46409032 46425266 + MGP_AJ_P0028730 Zfp62 protein_coding protein_coding MGP_AJ_T0028731.1 MGP_AJ_G0018192.1 mouse_genomes_project 11 46409036 46421993 + MGP_AJ_P0028731 Zfp62 protein_coding protein_coding MGP_AJ_T0028732.1 MGP_AJ_G0018192.1 mouse_genomes_project 11 46409225 46420349 + Zfp62 protein_coding processed_transcript MGP_AJ_T0028733.1 MGP_AJ_G0018192.1 mouse_genomes_project 11 46409225 46421623 + Zfp62 protein_coding retained_intron MGP_AJ_T0028734.1 MGP_AJ_G0018192.1 mouse_genomes_project 11 46409225 46421824 + MGP_AJ_P0028734 Zfp62 protein_coding protein_coding MGP_AJ_T0028735.1 MGP_AJ_G0018192.1 mouse_genomes_project 11 46409238 46425529 + MGP_AJ_P0028735 Zfp62 protein_coding protein_coding MGP_AJ_T0028736.1 MGP_AJ_G0018192.1 mouse_genomes_project 11 46409246 46422383 + MGP_AJ_P0028736 Zfp62 protein_coding protein_coding MGP_AJ_T0028737.1 MGP_AJ_G0018192.1 mouse_genomes_project 11 46409474 46421890 + MGP_AJ_P0028737 Zfp62 protein_coding protein_coding MGP_AJ_T0028738.1 MGP_AJ_G0018192.1 mouse_genomes_project 11 46410059 46424476 + MGP_AJ_P0028738 Zfp62 protein_coding protein_coding MGP_AJ_T0028739.1 MGP_AJ_G0018192.1 mouse_genomes_project 11 46419400 46425522 + MGP_AJ_P0028739 Zfp62 protein_coding protein_coding MGP_AJ_T0028740.1 MGP_AJ_G0018192.1 mouse_genomes_project 11 46420304 46422036 + MGP_AJ_P0028740 Zfp62 protein_coding protein_coding MGP_AJ_T0028741.1 MGP_AJ_G0018192.1 mouse_genomes_project 11 46421261 46425522 + MGP_AJ_P0028741 Zfp62 protein_coding protein_coding MGP_AJ_T0006348.1 MGP_AJ_G0005292.1 mouse_genomes_project 11 110837960 110862580 + Gm11680 lincRNA lincRNA MGP_AJ_T0017213.1 MGP_AJ_G0015159.1 mouse_genomes_project 11 73376993 73382119 + Mir22hg processed_transcript processed_transcript MGP_AJ_T0017214.1 MGP_AJ_G0015159.1 mouse_genomes_project 11 73377098 73379484 + Mir22hg processed_transcript processed_transcript MGP_AJ_T0033025.1 MGP_AJ_G0019275.1 mouse_genomes_project 11 105000778 105006600 - MGP_AJ_P0033025 Icam2 protein_coding protein_coding MGP_AJ_T0033026.1 MGP_AJ_G0019275.1 mouse_genomes_project 11 105001684 105004620 - MGP_AJ_P0033026 Icam2 protein_coding protein_coding MGP_AJ_T0033027.1 MGP_AJ_G0019275.1 mouse_genomes_project 11 105001930 105011886 - MGP_AJ_P0033027 Icam2 protein_coding protein_coding MGP_AJ_T0033028.1 MGP_AJ_G0019275.1 mouse_genomes_project 11 105004506 105011889 - MGP_AJ_P0033028 Icam2 protein_coding protein_coding MGP_AJ_T0033029.1 MGP_AJ_G0019275.1 mouse_genomes_project 11 105004863 105006815 - Icam2 protein_coding retained_intron MGP_AJ_T0033019.1 MGP_AJ_G0019274.1 mouse_genomes_project 11 104990674 105000237 + MGP_AJ_P0033019 Prr29 protein_coding protein_coding MGP_AJ_T0033020.1 MGP_AJ_G0019274.1 mouse_genomes_project 11 104997946 105000219 + MGP_AJ_P0033020 Prr29 protein_coding protein_coding MGP_AJ_T0033021.1 MGP_AJ_G0019274.1 mouse_genomes_project 11 104997965 105000365 + MGP_AJ_P0033021 Prr29 protein_coding protein_coding MGP_AJ_T0033022.1 MGP_AJ_G0019274.1 mouse_genomes_project 11 104997965 105000280 + MGP_AJ_P0033022 Prr29 protein_coding protein_coding MGP_AJ_T0033023.1 MGP_AJ_G0019274.1 mouse_genomes_project 11 104997965 105000471 + MGP_AJ_P0033023 Prr29 protein_coding protein_coding MGP_AJ_T0033024.1 MGP_AJ_G0019274.1 mouse_genomes_project 11 104997965 105000681 + MGP_AJ_P0033024 Prr29 protein_coding protein_coding MGP_AJ_T0011317.1 MGP_AJ_G0009439.1 mouse_genomes_project 11 115664978 115665151 - Gm27401 misc_RNA misc_RNA MGP_AJ_T0032974.1 MGP_AJ_G0019260.1 mouse_genomes_project 11 104685214 104692776 + MGP_AJ_P0032974 Taco1 protein_coding protein_coding MGP_AJ_T0030094.1 MGP_AJ_G0018541.1 mouse_genomes_project 11 67792757 67805325 - MGP_AJ_P0030094 Elp5 protein_coding nonsense_mediated_decay MGP_AJ_T0030095.1 MGP_AJ_G0018541.1 mouse_genomes_project 11 67792759 67806305 - MGP_AJ_P0030095 Elp5 protein_coding protein_coding MGP_AJ_T0030096.1 MGP_AJ_G0018541.1 mouse_genomes_project 11 67792763 67805316 - Elp5 protein_coding retained_intron MGP_AJ_T0030097.1 MGP_AJ_G0018541.1 mouse_genomes_project 11 67792767 67793939 - Elp5 protein_coding retained_intron MGP_AJ_T0030098.1 MGP_AJ_G0018541.1 mouse_genomes_project 11 67793776 67805114 - MGP_AJ_P0030098 Elp5 protein_coding nonsense_mediated_decay MGP_AJ_T0030099.1 MGP_AJ_G0018541.1 mouse_genomes_project 11 67794050 67805314 - Elp5 protein_coding retained_intron MGP_AJ_T0030100.1 MGP_AJ_G0018541.1 mouse_genomes_project 11 67795247 67805264 - Elp5 protein_coding retained_intron MGP_AJ_T0030101.1 MGP_AJ_G0018541.1 mouse_genomes_project 11 67795265 67806692 - MGP_AJ_P0030101 Elp5 protein_coding protein_coding MGP_AJ_T0030102.1 MGP_AJ_G0018541.1 mouse_genomes_project 11 67800155 67807570 - MGP_AJ_P0030102 Elp5 protein_coding protein_coding MGP_AJ_T0030103.1 MGP_AJ_G0018541.1 mouse_genomes_project 11 67805087 67805749 - MGP_AJ_P0030103 Elp5 protein_coding protein_coding MGP_AJ_T0030378.1 MGP_AJ_G0018594.1 mouse_genomes_project 11 69646333 69656526 + MGP_AJ_P0030378 Wscd1 protein_coding protein_coding MGP_AJ_T0030379.1 MGP_AJ_G0018594.1 mouse_genomes_project 11 69647098 69686525 + MGP_AJ_P0030379 Wscd1 protein_coding protein_coding MGP_AJ_T0030380.1 MGP_AJ_G0018594.1 mouse_genomes_project 11 69647393 69686525 + MGP_AJ_P0030380 Wscd1 protein_coding protein_coding MGP_AJ_T0030381.1 MGP_AJ_G0018594.1 mouse_genomes_project 11 69647789 69657382 + Wscd1 protein_coding retained_intron MGP_AJ_T0030382.1 MGP_AJ_G0018594.1 mouse_genomes_project 11 69647789 69686525 + MGP_AJ_P0030382 Wscd1 protein_coding protein_coding MGP_AJ_T0030383.1 MGP_AJ_G0018594.1 mouse_genomes_project 11 69665089 69682162 + Wscd1 protein_coding processed_transcript MGP_AJ_T0100587.1 MGP_AJ_G0038553.1 mouse_genomes_project 11 45924826 45924893 + Gm25296 snoRNA snoRNA MGP_AJ_T0029418.1 MGP_AJ_G0018390.1 mouse_genomes_project 11 58382746 58397175 + MGP_AJ_P0029418 Llgl1 protein_coding protein_coding MGP_AJ_T0029419.1 MGP_AJ_G0018390.1 mouse_genomes_project 11 58382868 58397175 + MGP_AJ_P0029419 Llgl1 protein_coding protein_coding MGP_AJ_T0029420.1 MGP_AJ_G0018390.1 mouse_genomes_project 11 58387202 58389078 + Llgl1 protein_coding retained_intron MGP_AJ_T0006314.1 MGP_AJ_G0005266.1 mouse_genomes_project 11 87218126 87222160 - Gm11496 lincRNA lincRNA MGP_AJ_T0012566.1 MGP_AJ_G0010661.1 mouse_genomes_project 11 32919511 32920190 + processed_pseudogene processed_pseudogene MGP_AJ_T0030833.1 MGP_AJ_G0018717.1 mouse_genomes_project 11 75462805 75465338 - MGP_AJ_P0030833 Gm10392 protein_coding protein_coding MGP_AJ_T0033599.1 MGP_AJ_G0019391.1 mouse_genomes_project 11 115123674 115126673 + MGP_AJ_P0033599 Galr2 protein_coding protein_coding MGP_AJ_T0033600.1 MGP_AJ_G0019391.1 mouse_genomes_project 11 115124221 115126396 + Galr2 protein_coding processed_transcript MGP_AJ_T0009690.1 MGP_AJ_G0007812.1 mouse_genomes_project 11 58411651 58411715 + Mir5100 miRNA miRNA MGP_AJ_T0012646.1 MGP_AJ_G0010741.1 mouse_genomes_project 11 60436969 60437268 + processed_pseudogene processed_pseudogene MGP_AJ_T0017155.1 MGP_AJ_G0015126.1 mouse_genomes_project 11 3696790 3700826 - Gm11981 processed_transcript processed_transcript MGP_AJ_T0003249.1 MGP_AJ_G0003004.1 mouse_genomes_project 11 83937779 83946566 - Bcas3os2 antisense antisense MGP_AJ_T0003187.1 MGP_AJ_G0002953.1 mouse_genomes_project 11 57829371 57830492 + Gm12265 antisense antisense MGP_AJ_T0027945.1 MGP_AJ_G0017993.1 mouse_genomes_project 11 3256689 3324493 + MGP_AJ_P0027945 Ogdh protein_coding protein_coding MGP_AJ_T0027946.1 MGP_AJ_G0017993.1 mouse_genomes_project 11 3256697 3263855 + Ogdh protein_coding retained_intron MGP_AJ_T0027947.1 MGP_AJ_G0017993.1 mouse_genomes_project 11 3256722 3324429 + MGP_AJ_P0027947 Ogdh protein_coding protein_coding MGP_AJ_T0027948.1 MGP_AJ_G0017993.1 mouse_genomes_project 11 3256724 3324443 + MGP_AJ_P0027948 Ogdh protein_coding protein_coding MGP_AJ_T0027949.1 MGP_AJ_G0017993.1 mouse_genomes_project 11 3257041 3279747 + MGP_AJ_P0027949 Ogdh protein_coding protein_coding MGP_AJ_T0027950.1 MGP_AJ_G0017993.1 mouse_genomes_project 11 3257228 3279631 + MGP_AJ_P0027950 Ogdh protein_coding protein_coding MGP_AJ_T0027951.1 MGP_AJ_G0017993.1 mouse_genomes_project 11 3257661 3324443 + MGP_AJ_P0027951 Ogdh protein_coding protein_coding MGP_AJ_T0033276.1 MGP_AJ_G0019327.1 mouse_genomes_project 11 113505219 113522514 + Dnaic2 protein_coding processed_transcript MGP_AJ_T0033277.1 MGP_AJ_G0019327.1 mouse_genomes_project 11 113505223 113535247 + MGP_AJ_P0033277 Dnaic2 protein_coding protein_coding MGP_AJ_T0033278.1 MGP_AJ_G0019327.1 mouse_genomes_project 11 113505227 113531714 + Dnaic2 protein_coding processed_transcript MGP_AJ_T0033279.1 MGP_AJ_G0019327.1 mouse_genomes_project 11 113506974 113535247 + MGP_AJ_P0033279 Dnaic2 protein_coding protein_coding MGP_AJ_T0033280.1 MGP_AJ_G0019327.1 mouse_genomes_project 11 113510813 113531931 + MGP_AJ_P0033280 Dnaic2 protein_coding protein_coding MGP_AJ_T0033281.1 MGP_AJ_G0019327.1 mouse_genomes_project 11 113515021 113531431 + Dnaic2 protein_coding processed_transcript MGP_AJ_T0033282.1 MGP_AJ_G0019327.1 mouse_genomes_project 11 113530037 113534520 + Dnaic2 protein_coding processed_transcript MGP_AJ_T0006176.1 MGP_AJ_G0005156.1 mouse_genomes_project 11 15008876 15016558 + Gm12018 lincRNA lincRNA MGP_AJ_T0029225.1 MGP_AJ_G0018324.1 mouse_genomes_project 11 55952503 55959252 - MGP_AJ_P0029225 4930504O13Rik protein_coding protein_coding MGP_AJ_T0034140.1 MGP_AJ_G0019497.1 mouse_genomes_project 11 119701183 119708386 - MGP_AJ_P0034140 Dus1l protein_coding protein_coding MGP_AJ_T0034141.1 MGP_AJ_G0019497.1 mouse_genomes_project 11 119701184 119702430 - Dus1l protein_coding retained_intron MGP_AJ_T0034142.1 MGP_AJ_G0019497.1 mouse_genomes_project 11 119701184 119708378 - MGP_AJ_P0034142 Dus1l protein_coding protein_coding MGP_AJ_T0034143.1 MGP_AJ_G0019497.1 mouse_genomes_project 11 119701184 119708378 - MGP_AJ_P0034143 Dus1l protein_coding protein_coding MGP_AJ_T0034144.1 MGP_AJ_G0019497.1 mouse_genomes_project 11 119701186 119701833 - Dus1l protein_coding retained_intron MGP_AJ_T0034145.1 MGP_AJ_G0019497.1 mouse_genomes_project 11 119701188 119708372 - Dus1l protein_coding retained_intron MGP_AJ_T0034146.1 MGP_AJ_G0019497.1 mouse_genomes_project 11 119701188 119708381 - MGP_AJ_P0034146 Dus1l protein_coding protein_coding MGP_AJ_T0034147.1 MGP_AJ_G0019497.1 mouse_genomes_project 11 119704756 119708360 - MGP_AJ_P0034147 Dus1l protein_coding protein_coding MGP_AJ_T0034148.1 MGP_AJ_G0019497.1 mouse_genomes_project 11 119705827 119708376 - MGP_AJ_P0034148 Dus1l protein_coding protein_coding MGP_AJ_T0009751.1 MGP_AJ_G0007873.1 mouse_genomes_project 11 100744375 100744486 - Mir8101 miRNA miRNA MGP_AJ_T0003320.1 MGP_AJ_G0003061.1 mouse_genomes_project 11 105665369 105667690 + antisense antisense MGP_AJ_T0003321.1 MGP_AJ_G0003061.1 mouse_genomes_project 11 105665474 105667695 + antisense antisense MGP_AJ_T0102262.1 MGP_AJ_G0040005.1 mouse_genomes_project 11 98644373 98648900 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0003230.1 MGP_AJ_G0002989.1 mouse_genomes_project 11 76241406 76241735 - Gm11192 antisense antisense MGP_AJ_T0031445.1 MGP_AJ_G0018873.1 mouse_genomes_project 11 85752339 85768616 + MGP_AJ_P0031445 Sept4 protein_coding protein_coding MGP_AJ_T0031446.1 MGP_AJ_G0018873.1 mouse_genomes_project 11 85761844 85772565 + Sept4 protein_coding retained_intron MGP_AJ_T0031447.1 MGP_AJ_G0018873.1 mouse_genomes_project 11 85761879 85773918 + Sept4 protein_coding retained_intron MGP_AJ_T0031448.1 MGP_AJ_G0018873.1 mouse_genomes_project 11 85761888 85769406 + Sept4 protein_coding retained_intron MGP_AJ_T0031449.1 MGP_AJ_G0018873.1 mouse_genomes_project 11 85761902 85773918 + Sept4 protein_coding retained_intron MGP_AJ_T0031450.1 MGP_AJ_G0018873.1 mouse_genomes_project 11 85761916 85769234 + Sept4 protein_coding retained_intron MGP_AJ_T0031451.1 MGP_AJ_G0018873.1 mouse_genomes_project 11 85761967 85773924 + MGP_AJ_P0031451 Sept4 protein_coding protein_coding MGP_AJ_T0031452.1 MGP_AJ_G0018873.1 mouse_genomes_project 11 85762360 85772653 + MGP_AJ_P0031452 Sept4 protein_coding protein_coding MGP_AJ_T0031453.1 MGP_AJ_G0018873.1 mouse_genomes_project 11 85764473 85773918 + MGP_AJ_P0031453 Sept4 protein_coding protein_coding MGP_AJ_T0031454.1 MGP_AJ_G0018873.1 mouse_genomes_project 11 85764493 85773754 + MGP_AJ_P0031454 Sept4 protein_coding protein_coding MGP_AJ_T0031455.1 MGP_AJ_G0018873.1 mouse_genomes_project 11 85764501 85769406 + Sept4 protein_coding retained_intron MGP_AJ_T0031456.1 MGP_AJ_G0018873.1 mouse_genomes_project 11 85764506 85773918 + Sept4 protein_coding retained_intron MGP_AJ_T0031457.1 MGP_AJ_G0018873.1 mouse_genomes_project 11 85765641 85772420 + MGP_AJ_P0031457 Sept4 protein_coding protein_coding MGP_AJ_T0031458.1 MGP_AJ_G0018873.1 mouse_genomes_project 11 85768599 85773243 + Sept4 protein_coding retained_intron MGP_AJ_T0031459.1 MGP_AJ_G0018873.1 mouse_genomes_project 11 85772246 85773373 + Sept4 protein_coding retained_intron MGP_AJ_T0031460.1 MGP_AJ_G0018873.1 mouse_genomes_project 11 85772855 85773918 + Sept4 protein_coding processed_transcript MGP_AJ_T0033778.1 MGP_AJ_G0019427.1 mouse_genomes_project 11 116842489 116845597 - MGP_AJ_P0033778 Socs3 protein_coding protein_coding MGP_AJ_T0033779.1 MGP_AJ_G0019427.1 mouse_genomes_project 11 116845285 116846524 - Socs3 protein_coding processed_transcript MGP_AJ_T0033780.1 MGP_AJ_G0019427.1 mouse_genomes_project 11 116845344 116845928 - Socs3 protein_coding processed_transcript MGP_AJ_T0032614.1 MGP_AJ_G0019191.1 mouse_genomes_project 11 100665490 100669349 - MGP_AJ_P0032614 Tmem101 protein_coding protein_coding MGP_AJ_T0032615.1 MGP_AJ_G0019191.1 mouse_genomes_project 11 100667118 100669292 - Tmem101 protein_coding processed_transcript MGP_AJ_T0032616.1 MGP_AJ_G0019191.1 mouse_genomes_project 11 100668759 100669300 - Tmem101 protein_coding processed_transcript MGP_AJ_T0031726.1 MGP_AJ_G0018938.1 mouse_genomes_project 11 93195305 93212184 + MGP_AJ_P0031726 Col1a1 protein_coding protein_coding MGP_AJ_T0031727.1 MGP_AJ_G0018938.1 mouse_genomes_project 11 93196762 93197176 + Col1a1 protein_coding processed_transcript MGP_AJ_T0031728.1 MGP_AJ_G0018938.1 mouse_genomes_project 11 93198084 93198814 + Col1a1 protein_coding retained_intron MGP_AJ_T0031729.1 MGP_AJ_G0018938.1 mouse_genomes_project 11 93204508 93205170 + Col1a1 protein_coding retained_intron MGP_AJ_T0006255.1 MGP_AJ_G0005225.1 mouse_genomes_project 11 60926326 60940707 + B430319H21Rik lincRNA lincRNA MGP_AJ_T0031138.1 MGP_AJ_G0018789.1 mouse_genomes_project 11 80088665 80090479 + MGP_AJ_P0031138 Ccl7 protein_coding protein_coding MGP_AJ_T0030979.1 MGP_AJ_G0018746.1 mouse_genomes_project 11 76436408 76442657 + MGP_AJ_P0030979 Slc46a1 protein_coding protein_coding MGP_AJ_T0030980.1 MGP_AJ_G0018746.1 mouse_genomes_project 11 76436461 76442334 + MGP_AJ_P0030980 Slc46a1 protein_coding nonsense_mediated_decay MGP_AJ_T0030981.1 MGP_AJ_G0018746.1 mouse_genomes_project 11 76440937 76442771 + Slc46a1 protein_coding retained_intron MGP_AJ_T0028003.1 MGP_AJ_G0018005.1 mouse_genomes_project 11 4043033 4158501 + MGP_AJ_P0028003 Adcy1 protein_coding protein_coding MGP_AJ_T0028004.1 MGP_AJ_G0018005.1 mouse_genomes_project 11 4139826 4152874 + Adcy1 protein_coding processed_transcript MGP_AJ_T0032490.1 MGP_AJ_G0019163.1 mouse_genomes_project 11 99792257 99797346 + MGP_AJ_P0032490 Aoc2 protein_coding protein_coding MGP_AJ_T0032491.1 MGP_AJ_G0019163.1 mouse_genomes_project 11 99792281 99797138 + MGP_AJ_P0032491 Aoc2 protein_coding protein_coding MGP_AJ_T0017136.1 MGP_AJ_G0015119.1 mouse_genomes_project 11 218436 244807 - Gm12592 processed_transcript processed_transcript MGP_AJ_T0032983.1 MGP_AJ_G0019264.1 mouse_genomes_project 11 104788199 104829473 - Strada protein_coding processed_transcript MGP_AJ_T0032984.1 MGP_AJ_G0019264.1 mouse_genomes_project 11 104788220 104820396 - MGP_AJ_P0032984 Strada protein_coding protein_coding MGP_AJ_T0032985.1 MGP_AJ_G0019264.1 mouse_genomes_project 11 104788717 104820422 - MGP_AJ_P0032985 Strada protein_coding protein_coding MGP_AJ_T0032986.1 MGP_AJ_G0019264.1 mouse_genomes_project 11 104793344 104820399 - MGP_AJ_P0032986 Strada protein_coding protein_coding MGP_AJ_T0032987.1 MGP_AJ_G0019264.1 mouse_genomes_project 11 104810770 104820432 - MGP_AJ_P0032987 Strada protein_coding protein_coding MGP_AJ_T0006188.1 MGP_AJ_G0005167.1 mouse_genomes_project 11 19538150 19539230 + Gm12052 lincRNA lincRNA MGP_AJ_T0033850.1 MGP_AJ_G0019444.1 mouse_genomes_project 11 118126159 118129289 + Ccdc40 protein_coding processed_transcript MGP_AJ_T0033851.1 MGP_AJ_G0019444.1 mouse_genomes_project 11 118126165 118129205 + Ccdc40 protein_coding processed_transcript MGP_AJ_T0033852.1 MGP_AJ_G0019444.1 mouse_genomes_project 11 118126689 118160562 + MGP_AJ_P0033852 Ccdc40 protein_coding protein_coding MGP_AJ_T0033853.1 MGP_AJ_G0019444.1 mouse_genomes_project 11 118126694 118162132 + MGP_AJ_P0033853 Ccdc40 protein_coding protein_coding MGP_AJ_T0033854.1 MGP_AJ_G0019444.1 mouse_genomes_project 11 118136496 118149481 + Ccdc40 protein_coding retained_intron MGP_AJ_T0033855.1 MGP_AJ_G0019444.1 mouse_genomes_project 11 118151218 118162054 + Ccdc40 protein_coding retained_intron MGP_AJ_T0033856.1 MGP_AJ_G0019444.1 mouse_genomes_project 11 118156588 118162854 + Ccdc40 protein_coding processed_transcript MGP_AJ_T0033857.1 MGP_AJ_G0019444.1 mouse_genomes_project 11 118157427 118160782 + Ccdc40 protein_coding retained_intron MGP_AJ_T0033858.1 MGP_AJ_G0019444.1 mouse_genomes_project 11 118160533 118161924 + Ccdc40 protein_coding retained_intron MGP_AJ_T0028554.1 MGP_AJ_G0018138.1 mouse_genomes_project 11 39262402 39314376 - MGP_AJ_P0028554 Gabra1 protein_coding protein_coding MGP_AJ_T0028555.1 MGP_AJ_G0018138.1 mouse_genomes_project 11 39262402 39313609 - MGP_AJ_P0028555 Gabra1 protein_coding protein_coding MGP_AJ_T0028556.1 MGP_AJ_G0018138.1 mouse_genomes_project 11 39267017 39311427 - MGP_AJ_P0028556 Gabra1 protein_coding protein_coding MGP_AJ_T0028557.1 MGP_AJ_G0018138.1 mouse_genomes_project 11 39286596 39311540 - MGP_AJ_P0028557 Gabra1 protein_coding protein_coding MGP_AJ_T0028558.1 MGP_AJ_G0018138.1 mouse_genomes_project 11 39307567 39314376 - MGP_AJ_P0028558 Gabra1 protein_coding protein_coding MGP_AJ_T0028559.1 MGP_AJ_G0018138.1 mouse_genomes_project 11 39308873 39313906 - Gabra1 protein_coding processed_transcript MGP_AJ_T0028560.1 MGP_AJ_G0018138.1 mouse_genomes_project 11 39311143 39314356 - MGP_AJ_P0028560 Gabra1 protein_coding protein_coding MGP_AJ_T0032153.1 MGP_AJ_G0019045.1 mouse_genomes_project 11 97266714 97282850 + MGP_AJ_P0032153 Cdc6 protein_coding protein_coding MGP_AJ_T0032154.1 MGP_AJ_G0019045.1 mouse_genomes_project 11 97266762 97282854 + MGP_AJ_P0032154 Cdc6 protein_coding nonsense_mediated_decay MGP_AJ_T0032155.1 MGP_AJ_G0019045.1 mouse_genomes_project 11 97267064 97280807 + MGP_AJ_P0032155 Cdc6 protein_coding protein_coding MGP_AJ_T0032156.1 MGP_AJ_G0019045.1 mouse_genomes_project 11 97279379 97280375 + Cdc6 protein_coding retained_intron MGP_AJ_T0006283.1 MGP_AJ_G0005247.1 mouse_genomes_project 11 75865281 75882342 - Gm11190 lincRNA lincRNA MGP_AJ_T0031704.1 MGP_AJ_G0018931.1 mouse_genomes_project 11 92857919 92873332 + MGP_AJ_P0031704 Lrrc59 protein_coding protein_coding MGP_AJ_T0031705.1 MGP_AJ_G0018931.1 mouse_genomes_project 11 92857966 92863396 + Lrrc59 protein_coding retained_intron MGP_AJ_T0031710.1 MGP_AJ_G0018933.1 mouse_genomes_project 11 92883327 92889514 + MGP_AJ_P0031710 Mrpl27 protein_coding protein_coding MGP_AJ_T0031711.1 MGP_AJ_G0018933.1 mouse_genomes_project 11 92883336 92889343 + Mrpl27 protein_coding processed_transcript MGP_AJ_T0031712.1 MGP_AJ_G0018933.1 mouse_genomes_project 11 92883571 92889045 + Mrpl27 protein_coding processed_transcript MGP_AJ_T0031713.1 MGP_AJ_G0018933.1 mouse_genomes_project 11 92883591 92889141 + Mrpl27 protein_coding processed_transcript MGP_AJ_T0033012.1 MGP_AJ_G0019270.1 mouse_genomes_project 11 104903526 104914928 + MGP_AJ_P0033012 Tcam1 protein_coding nonsense_mediated_decay MGP_AJ_T0033013.1 MGP_AJ_G0019270.1 mouse_genomes_project 11 104903602 104915540 + MGP_AJ_P0033013 Tcam1 protein_coding protein_coding MGP_AJ_T0012526.1 MGP_AJ_G0010621.1 mouse_genomes_project 11 18866615 18867179 + processed_pseudogene processed_pseudogene MGP_AJ_T0028980.1 MGP_AJ_G0018255.1 mouse_genomes_project 11 50165409 50586783 + MGP_AJ_P0028980 Fstl4 protein_coding protein_coding MGP_AJ_T0017176.1 MGP_AJ_G0015137.1 mouse_genomes_project 11 27254560 27267589 + Gm8098 processed_transcript processed_transcript MGP_AJ_T0029226.1 MGP_AJ_G0018325.1 mouse_genomes_project 11 55963474 55964540 - MGP_AJ_P0029226 Olfr30 protein_coding protein_coding MGP_AJ_T0033309.1 MGP_AJ_G0019333.1 mouse_genomes_project 11 113713199 113724870 - MGP_AJ_P0033309 Cd300lb protein_coding protein_coding MGP_AJ_T0033310.1 MGP_AJ_G0019333.1 mouse_genomes_project 11 113713199 113724855 - MGP_AJ_P0033310 Cd300lb protein_coding protein_coding MGP_AJ_T0033311.1 MGP_AJ_G0019333.1 mouse_genomes_project 11 113718808 113724771 - Cd300lb protein_coding processed_transcript MGP_AJ_T0100614.1 MGP_AJ_G0038580.1 mouse_genomes_project 11 76140472 76140543 - Snord4a snoRNA snoRNA MGP_AJ_T0030518.1 MGP_AJ_G0018632.1 mouse_genomes_project 11 71336982 71340420 - MGP_AJ_P0030518 Olfr378 protein_coding protein_coding MGP_AJ_T0012666.1 MGP_AJ_G0010761.1 mouse_genomes_project 11 68735919 68736553 + processed_pseudogene processed_pseudogene MGP_AJ_T0029428.1 MGP_AJ_G0018393.1 mouse_genomes_project 11 58423152 58462306 - MGP_AJ_P0029428 Top3a protein_coding protein_coding MGP_AJ_T0029429.1 MGP_AJ_G0018393.1 mouse_genomes_project 11 58423153 58462228 - MGP_AJ_P0029429 Top3a protein_coding protein_coding MGP_AJ_T0029430.1 MGP_AJ_G0018393.1 mouse_genomes_project 11 58424986 58462206 - MGP_AJ_P0029430 Top3a protein_coding protein_coding MGP_AJ_T0029431.1 MGP_AJ_G0018393.1 mouse_genomes_project 11 58425327 58462205 - MGP_AJ_P0029431 Top3a protein_coding protein_coding MGP_AJ_T0029432.1 MGP_AJ_G0018393.1 mouse_genomes_project 11 58432730 58435950 - Top3a protein_coding retained_intron MGP_AJ_T0029433.1 MGP_AJ_G0018393.1 mouse_genomes_project 11 58446018 58462240 - MGP_AJ_P0029433 Top3a protein_coding protein_coding MGP_AJ_T0012551.1 MGP_AJ_G0010646.1 mouse_genomes_project 11 27558832 27559328 - processed_pseudogene processed_pseudogene MGP_AJ_T0032055.1 MGP_AJ_G0019021.1 mouse_genomes_project 11 96672241 96676475 - MGP_AJ_P0032055 Neurod2 protein_coding protein_coding MGP_AJ_T0027892.1 MGP_AJ_G0017979.1 mouse_genomes_project 11 2757799 2769748 + MGP_AJ_P0027892 Dbnl protein_coding protein_coding MGP_AJ_T0027893.1 MGP_AJ_G0017979.1 mouse_genomes_project 11 2757833 2769406 + MGP_AJ_P0027893 Dbnl protein_coding protein_coding MGP_AJ_T0027894.1 MGP_AJ_G0017979.1 mouse_genomes_project 11 2757841 2770081 + MGP_AJ_P0027894 Dbnl protein_coding protein_coding MGP_AJ_T0000336.1 MGP_AJ_G0000280.1 mouse_genomes_project 11 41557699 41557752 - mt-Tk Mt_tRNA Mt_tRNA MGP_AJ_T0017219.1 MGP_AJ_G0015163.1 mouse_genomes_project 11 80975039 80983795 - Unc45bos processed_transcript processed_transcript MGP_AJ_T0003174.1 MGP_AJ_G0002943.1 mouse_genomes_project 11 55091587 55117148 - 4933424L21Rik antisense antisense MGP_AJ_T0009722.1 MGP_AJ_G0007844.1 mouse_genomes_project 11 77721076 77721142 + Mir193a miRNA miRNA MGP_AJ_T0031313.1 MGP_AJ_G0018841.1 mouse_genomes_project 11 83036747 83040625 - MGP_AJ_P0031313 Pigw protein_coding protein_coding MGP_AJ_T0031314.1 MGP_AJ_G0018841.1 mouse_genomes_project 11 83037275 83040715 - MGP_AJ_P0031314 Pigw protein_coding protein_coding MGP_AJ_T0030540.1 MGP_AJ_G0018647.1 mouse_genomes_project 11 71883451 71884542 + MGP_AJ_P0030540 Olfr397 protein_coding protein_coding MGP_AJ_T0032099.1 MGP_AJ_G0019034.1 mouse_genomes_project 11 97002132 97013539 + MGP_AJ_P0032099 Gsdma2 protein_coding protein_coding MGP_AJ_T0032100.1 MGP_AJ_G0019034.1 mouse_genomes_project 11 97002136 97005707 + Gsdma2 protein_coding processed_transcript MGP_AJ_T0032101.1 MGP_AJ_G0019034.1 mouse_genomes_project 11 97002136 97013528 + MGP_AJ_P0032101 Gsdma2 protein_coding protein_coding MGP_AJ_T0032102.1 MGP_AJ_G0019034.1 mouse_genomes_project 11 97002142 97004668 + Gsdma2 protein_coding processed_transcript MGP_AJ_T0032103.1 MGP_AJ_G0019034.1 mouse_genomes_project 11 97002148 97005279 + Gsdma2 protein_coding processed_transcript MGP_AJ_T0032104.1 MGP_AJ_G0019034.1 mouse_genomes_project 11 97006242 97007644 + Gsdma2 protein_coding processed_transcript MGP_AJ_T0032105.1 MGP_AJ_G0019034.1 mouse_genomes_project 11 97007104 97010519 + Gsdma2 protein_coding processed_transcript MGP_AJ_T0028005.1 MGP_AJ_G0018006.1 mouse_genomes_project 11 4177917 4182576 + MGP_AJ_P0028005 Igfbp1 protein_coding protein_coding MGP_AJ_T0032025.1 MGP_AJ_G0019015.1 mouse_genomes_project 11 96334182 96355325 - MGP_AJ_P0032025 Cacnb1 protein_coding protein_coding MGP_AJ_T0032026.1 MGP_AJ_G0019015.1 mouse_genomes_project 11 96335575 96355318 - MGP_AJ_P0032026 Cacnb1 protein_coding protein_coding MGP_AJ_T0032027.1 MGP_AJ_G0019015.1 mouse_genomes_project 11 96337437 96351063 - MGP_AJ_P0032027 Cacnb1 protein_coding protein_coding MGP_AJ_T0032028.1 MGP_AJ_G0019015.1 mouse_genomes_project 11 96337615 96355325 - MGP_AJ_P0032028 Cacnb1 protein_coding protein_coding MGP_AJ_T0032029.1 MGP_AJ_G0019015.1 mouse_genomes_project 11 96337615 96355325 - MGP_AJ_P0032029 Cacnb1 protein_coding protein_coding MGP_AJ_T0032030.1 MGP_AJ_G0019015.1 mouse_genomes_project 11 96342315 96355725 - Cacnb1 protein_coding processed_transcript MGP_AJ_T0032031.1 MGP_AJ_G0019015.1 mouse_genomes_project 11 96342350 96345242 - Cacnb1 protein_coding processed_transcript MGP_AJ_T0031084.1 MGP_AJ_G0018776.1 mouse_genomes_project 11 78235404 78295204 + MGP_AJ_P0031084 Rhot1 protein_coding protein_coding MGP_AJ_T0031085.1 MGP_AJ_G0018776.1 mouse_genomes_project 11 78235440 78296299 + MGP_AJ_P0031085 Rhot1 protein_coding protein_coding MGP_AJ_T0031086.1 MGP_AJ_G0018776.1 mouse_genomes_project 11 78235469 78295878 + MGP_AJ_P0031086 Rhot1 protein_coding protein_coding MGP_AJ_T0031087.1 MGP_AJ_G0018776.1 mouse_genomes_project 11 78235498 78279207 + Rhot1 protein_coding retained_intron MGP_AJ_T0031088.1 MGP_AJ_G0018776.1 mouse_genomes_project 11 78235504 78295159 + MGP_AJ_P0031088 Rhot1 protein_coding protein_coding MGP_AJ_T0031089.1 MGP_AJ_G0018776.1 mouse_genomes_project 11 78235532 78273573 + Rhot1 protein_coding retained_intron MGP_AJ_T0031090.1 MGP_AJ_G0018776.1 mouse_genomes_project 11 78235672 78295888 + MGP_AJ_P0031090 Rhot1 protein_coding protein_coding MGP_AJ_T0031091.1 MGP_AJ_G0018776.1 mouse_genomes_project 11 78276843 78295130 + Rhot1 protein_coding processed_transcript MGP_AJ_T0031092.1 MGP_AJ_G0018776.1 mouse_genomes_project 11 78280469 78282893 + Rhot1 protein_coding retained_intron MGP_AJ_T0030904.1 MGP_AJ_G0018730.1 mouse_genomes_project 11 76117289 76124380 - Traf4 protein_coding retained_intron MGP_AJ_T0030905.1 MGP_AJ_G0018730.1 mouse_genomes_project 11 76118190 76124380 - MGP_AJ_P0030905 Traf4 protein_coding protein_coding MGP_AJ_T0030906.1 MGP_AJ_G0018730.1 mouse_genomes_project 11 76119583 76124307 - Traf4 protein_coding retained_intron MGP_AJ_T0027814.1 MGP_AJ_G0017964.1 mouse_genomes_project 11 1848321 1882539 + MGP_AJ_P0027814 Thoc5 protein_coding protein_coding MGP_AJ_T0027815.1 MGP_AJ_G0017964.1 mouse_genomes_project 11 1848344 1882537 + MGP_AJ_P0027815 Thoc5 protein_coding protein_coding MGP_AJ_T0027816.1 MGP_AJ_G0017964.1 mouse_genomes_project 11 1856089 1858344 + Thoc5 protein_coding processed_transcript MGP_AJ_T0027817.1 MGP_AJ_G0017964.1 mouse_genomes_project 11 1856089 1867993 + Thoc5 protein_coding processed_transcript MGP_AJ_T0027818.1 MGP_AJ_G0017964.1 mouse_genomes_project 11 1856089 1871918 + MGP_AJ_P0027818 Thoc5 protein_coding protein_coding MGP_AJ_T0027819.1 MGP_AJ_G0017964.1 mouse_genomes_project 11 1868988 1874157 + Thoc5 protein_coding processed_transcript MGP_AJ_T0028995.1 MGP_AJ_G0018260.1 mouse_genomes_project 11 50829151 50832057 - MGP_AJ_P0028995 Uqcrq protein_coding protein_coding MGP_AJ_T0028996.1 MGP_AJ_G0018260.1 mouse_genomes_project 11 50830182 50832061 - Uqcrq protein_coding processed_transcript MGP_AJ_T0028997.1 MGP_AJ_G0018260.1 mouse_genomes_project 11 50830182 50832057 - MGP_AJ_P0028997 Uqcrq protein_coding protein_coding MGP_AJ_T0028998.1 MGP_AJ_G0018260.1 mouse_genomes_project 11 50830182 50831664 - MGP_AJ_P0028998 Uqcrq protein_coding protein_coding MGP_AJ_T0032576.1 MGP_AJ_G0019183.1 mouse_genomes_project 11 100481817 100497991 - MGP_AJ_P0032576 Dusp3 protein_coding protein_coding MGP_AJ_T0032577.1 MGP_AJ_G0019183.1 mouse_genomes_project 11 100481817 100494476 - MGP_AJ_P0032577 Dusp3 protein_coding protein_coding MGP_AJ_T0032578.1 MGP_AJ_G0019183.1 mouse_genomes_project 11 100481817 100497991 - MGP_AJ_P0032578 Dusp3 protein_coding protein_coding MGP_AJ_T0032579.1 MGP_AJ_G0019183.1 mouse_genomes_project 11 100481817 100495777 - MGP_AJ_P0032579 Dusp3 protein_coding protein_coding MGP_AJ_T0032580.1 MGP_AJ_G0019183.1 mouse_genomes_project 11 100484370 100492667 - MGP_AJ_P0032580 Dusp3 protein_coding protein_coding MGP_AJ_T0032581.1 MGP_AJ_G0019183.1 mouse_genomes_project 11 100485617 100495756 - MGP_AJ_P0032581 Dusp3 protein_coding protein_coding MGP_AJ_T0032582.1 MGP_AJ_G0019183.1 mouse_genomes_project 11 100491572 100495729 - MGP_AJ_P0032582 Dusp3 protein_coding protein_coding MGP_AJ_T0012597.1 MGP_AJ_G0010692.1 mouse_genomes_project 11 47631212 47631474 + processed_pseudogene processed_pseudogene MGP_AJ_T0012471.1 MGP_AJ_G0010566.1 mouse_genomes_project 11 3421914 3422303 - processed_pseudogene processed_pseudogene MGP_AJ_T0029633.1 MGP_AJ_G0018430.1 mouse_genomes_project 11 60495844 60496243 + MGP_AJ_P0029633 Gm10428 protein_coding protein_coding MGP_AJ_T0030536.1 MGP_AJ_G0018644.1 mouse_genomes_project 11 71804281 71805214 - MGP_AJ_P0030536 Olfr394 protein_coding protein_coding MGP_AJ_T0031036.1 MGP_AJ_G0018762.1 mouse_genomes_project 11 77293487 77294247 - MGP_AJ_P0031036 Gm9964 protein_coding protein_coding MGP_AJ_T0030963.1 MGP_AJ_G0018741.1 mouse_genomes_project 11 76286228 76291042 + MGP_AJ_P0030963 Aldoc protein_coding protein_coding MGP_AJ_T0030964.1 MGP_AJ_G0018741.1 mouse_genomes_project 11 76286428 76287958 + Aldoc protein_coding retained_intron MGP_AJ_T0030965.1 MGP_AJ_G0018741.1 mouse_genomes_project 11 76287460 76290021 + MGP_AJ_P0030965 Aldoc protein_coding protein_coding MGP_AJ_T0030966.1 MGP_AJ_G0018741.1 mouse_genomes_project 11 76287586 76289379 + Aldoc protein_coding processed_transcript MGP_AJ_T0030967.1 MGP_AJ_G0018741.1 mouse_genomes_project 11 76288325 76288822 + Aldoc protein_coding processed_transcript MGP_AJ_T0030968.1 MGP_AJ_G0018741.1 mouse_genomes_project 11 76288589 76289969 + Aldoc protein_coding processed_transcript MGP_AJ_T0011800.1 MGP_AJ_G0009920.1 mouse_genomes_project 11 115055503 115059281 + MGP_AJ_P0011800 Cdk3-ps polymorphic_pseudogene polymorphic_pseudogene MGP_AJ_T0011801.1 MGP_AJ_G0009920.1 mouse_genomes_project 11 115055986 115056685 + Cdk3-ps polymorphic_pseudogene processed_transcript MGP_AJ_T0011802.1 MGP_AJ_G0009920.1 mouse_genomes_project 11 115056040 115059790 + Cdk3-ps polymorphic_pseudogene processed_transcript MGP_AJ_T0030234.1 MGP_AJ_G0018570.1 mouse_genomes_project 11 68380820 68381940 + MGP_AJ_P0030234 Pld2 protein_coding protein_coding MGP_AJ_T0030235.1 MGP_AJ_G0018570.1 mouse_genomes_project 11 68381062 68400492 + MGP_AJ_P0030235 Pld2 protein_coding protein_coding MGP_AJ_T0030236.1 MGP_AJ_G0018570.1 mouse_genomes_project 11 68381099 68400492 + MGP_AJ_P0030236 Pld2 protein_coding protein_coding MGP_AJ_T0030237.1 MGP_AJ_G0018570.1 mouse_genomes_project 11 68381112 68387155 + MGP_AJ_P0030237 Pld2 protein_coding protein_coding MGP_AJ_T0030238.1 MGP_AJ_G0018570.1 mouse_genomes_project 11 68395763 68399485 + Pld2 protein_coding retained_intron MGP_AJ_T0030239.1 MGP_AJ_G0018570.1 mouse_genomes_project 11 68398019 68399609 + MGP_AJ_P0030239 Pld2 protein_coding protein_coding MGP_AJ_T0030240.1 MGP_AJ_G0018570.1 mouse_genomes_project 11 68398184 68399859 + Pld2 protein_coding retained_intron MGP_AJ_T0031534.1 MGP_AJ_G0018892.1 mouse_genomes_project 11 86559281 86941503 - MGP_AJ_P0031534 Msi2 protein_coding protein_coding MGP_AJ_T0031535.1 MGP_AJ_G0018892.1 mouse_genomes_project 11 86563300 86941450 - MGP_AJ_P0031535 Msi2 protein_coding protein_coding MGP_AJ_T0031536.1 MGP_AJ_G0018892.1 mouse_genomes_project 11 86585605 86812409 - Msi2 protein_coding retained_intron MGP_AJ_T0031537.1 MGP_AJ_G0018892.1 mouse_genomes_project 11 86700236 86941459 - Msi2 protein_coding retained_intron MGP_AJ_T0031538.1 MGP_AJ_G0018892.1 mouse_genomes_project 11 86812316 86941862 - MGP_AJ_P0031538 Msi2 protein_coding protein_coding MGP_AJ_T0031539.1 MGP_AJ_G0018892.1 mouse_genomes_project 11 86909079 86941503 - MGP_AJ_P0031539 Msi2 protein_coding protein_coding MGP_AJ_T0031540.1 MGP_AJ_G0018892.1 mouse_genomes_project 11 86935534 86941503 - Msi2 protein_coding processed_transcript MGP_AJ_T0003354.1 MGP_AJ_G0003089.1 mouse_genomes_project 11 118721310 118734901 - Rptoros antisense antisense MGP_AJ_T0099362.1 MGP_AJ_G0037328.1 mouse_genomes_project 11 87313199 87313303 - Gm22534 snRNA snRNA MGP_AJ_T0099378.1 MGP_AJ_G0037344.1 mouse_genomes_project 11 103657980 103658085 + Gm25362 snRNA snRNA MGP_AJ_T0033198.1 MGP_AJ_G0019309.1 mouse_genomes_project 11 108716119 108787536 - MGP_AJ_P0033198 Abca8a protein_coding protein_coding MGP_AJ_T0033199.1 MGP_AJ_G0019309.1 mouse_genomes_project 11 108716121 108787495 - MGP_AJ_P0033199 Abca8a protein_coding protein_coding MGP_AJ_T0033200.1 MGP_AJ_G0019309.1 mouse_genomes_project 11 108716121 108787495 - MGP_AJ_P0033200 Abca8a protein_coding protein_coding MGP_AJ_T0033201.1 MGP_AJ_G0019309.1 mouse_genomes_project 11 108717333 108720567 - Abca8a protein_coding processed_transcript MGP_AJ_T0033202.1 MGP_AJ_G0019309.1 mouse_genomes_project 11 108754012 108756513 - Abca8a protein_coding processed_transcript MGP_AJ_T0033203.1 MGP_AJ_G0019309.1 mouse_genomes_project 11 108759934 108761519 - Abca8a protein_coding processed_transcript MGP_AJ_T0033204.1 MGP_AJ_G0019309.1 mouse_genomes_project 11 108761452 108766797 - MGP_AJ_P0033204 Abca8a protein_coding protein_coding MGP_AJ_T0033205.1 MGP_AJ_G0019309.1 mouse_genomes_project 11 108775303 108787495 - MGP_AJ_P0033205 Abca8a protein_coding protein_coding MGP_AJ_T0032928.1 MGP_AJ_G0019251.1 mouse_genomes_project 11 103777382 103883043 + MGP_AJ_P0032928 Tlk2 protein_coding protein_coding MGP_AJ_T0032929.1 MGP_AJ_G0019251.1 mouse_genomes_project 11 103779319 103808178 + Tlk2 protein_coding retained_intron MGP_AJ_T0032930.1 MGP_AJ_G0019251.1 mouse_genomes_project 11 103780221 103881260 + MGP_AJ_P0032930 Tlk2 protein_coding protein_coding MGP_AJ_T0032931.1 MGP_AJ_G0019251.1 mouse_genomes_project 11 103780332 103875601 + MGP_AJ_P0032931 Tlk2 protein_coding protein_coding MGP_AJ_T0032932.1 MGP_AJ_G0019251.1 mouse_genomes_project 11 103780418 103881264 + MGP_AJ_P0032932 Tlk2 protein_coding unknown_likely_coding MGP_AJ_T0032933.1 MGP_AJ_G0019251.1 mouse_genomes_project 11 103780456 103881259 + MGP_AJ_P0032933 Tlk2 protein_coding protein_coding MGP_AJ_T0032934.1 MGP_AJ_G0019251.1 mouse_genomes_project 11 103780521 103876015 + MGP_AJ_P0032934 Tlk2 protein_coding protein_coding MGP_AJ_T0032935.1 MGP_AJ_G0019251.1 mouse_genomes_project 11 103780538 103881259 + MGP_AJ_P0032935 Tlk2 protein_coding nonsense_mediated_decay MGP_AJ_T0032936.1 MGP_AJ_G0019251.1 mouse_genomes_project 11 103780756 103808881 + MGP_AJ_P0032936 Tlk2 protein_coding protein_coding MGP_AJ_T0032937.1 MGP_AJ_G0019251.1 mouse_genomes_project 11 103805739 103837419 + Tlk2 protein_coding retained_intron MGP_AJ_T0032938.1 MGP_AJ_G0019251.1 mouse_genomes_project 11 103807175 103846270 + MGP_AJ_P0032938 Tlk2 protein_coding protein_coding MGP_AJ_T0032939.1 MGP_AJ_G0019251.1 mouse_genomes_project 11 103843530 103844447 + Tlk2 protein_coding retained_intron MGP_AJ_T0032940.1 MGP_AJ_G0019251.1 mouse_genomes_project 11 103849697 103868834 + Tlk2 protein_coding processed_transcript MGP_AJ_T0098904.1 MGP_AJ_G0036886.1 mouse_genomes_project 11 106128170 106129357 + Gm11722 sense_intronic sense_intronic MGP_AJ_T0003322.1 MGP_AJ_G0003062.1 mouse_genomes_project 11 105795332 105806042 + Gm11715 antisense antisense MGP_AJ_T0032863.1 MGP_AJ_G0019236.1 mouse_genomes_project 11 102289461 102311924 - MGP_AJ_P0032863 Wnt9b protein_coding protein_coding MGP_AJ_T0012454.1 MGP_AJ_G0010549.1 mouse_genomes_project 11 104416 104787 - processed_pseudogene processed_pseudogene MGP_AJ_T0029229.1 MGP_AJ_G0018327.1 mouse_genomes_project 11 56015474 56046729 - MGP_AJ_P0029229 protein_coding protein_coding MGP_AJ_T0033571.1 MGP_AJ_G0019386.1 mouse_genomes_project 11 114980026 115005744 - Fbf1 protein_coding processed_transcript MGP_AJ_T0033572.1 MGP_AJ_G0019386.1 mouse_genomes_project 11 114980026 114984882 - Fbf1 protein_coding processed_transcript MGP_AJ_T0033573.1 MGP_AJ_G0019386.1 mouse_genomes_project 11 114980026 115006117 - MGP_AJ_P0033573 Fbf1 protein_coding protein_coding MGP_AJ_T0033574.1 MGP_AJ_G0019386.1 mouse_genomes_project 11 114980027 115003878 - MGP_AJ_P0033574 Fbf1 protein_coding protein_coding MGP_AJ_T0033575.1 MGP_AJ_G0019386.1 mouse_genomes_project 11 114980983 114988600 - Fbf1 protein_coding processed_transcript MGP_AJ_T0033576.1 MGP_AJ_G0019386.1 mouse_genomes_project 11 114992637 114995409 - Fbf1 protein_coding processed_transcript MGP_AJ_T0033577.1 MGP_AJ_G0019386.1 mouse_genomes_project 11 114992668 114996815 - Fbf1 protein_coding processed_transcript MGP_AJ_T0033578.1 MGP_AJ_G0019386.1 mouse_genomes_project 11 114993004 115006118 - MGP_AJ_P0033578 Fbf1 protein_coding protein_coding MGP_AJ_T0033579.1 MGP_AJ_G0019386.1 mouse_genomes_project 11 114993895 115003847 - Fbf1 protein_coding processed_transcript MGP_AJ_T0033580.1 MGP_AJ_G0019386.1 mouse_genomes_project 11 115001292 115006130 - Fbf1 protein_coding processed_transcript MGP_AJ_T0033581.1 MGP_AJ_G0019386.1 mouse_genomes_project 11 115002643 115006112 - MGP_AJ_P0033581 Fbf1 protein_coding protein_coding MGP_AJ_T0033582.1 MGP_AJ_G0019386.1 mouse_genomes_project 11 115003746 115005729 - Fbf1 protein_coding retained_intron MGP_AJ_T0009728.1 MGP_AJ_G0007850.1 mouse_genomes_project 11 85283722 85283808 + Mir301 miRNA miRNA MGP_AJ_T0000841.1 MGP_AJ_G0000776.1 mouse_genomes_project 11 15770252 15771809 - TEC TEC MGP_AJ_T0012615.1 MGP_AJ_G0010710.1 mouse_genomes_project 11 51865316 51865614 + processed_pseudogene processed_pseudogene MGP_AJ_T0033766.1 MGP_AJ_G0019423.1 mouse_genomes_project 11 116697953 116712256 + MGP_AJ_P0033766 Afmid protein_coding protein_coding MGP_AJ_T0033767.1 MGP_AJ_G0019423.1 mouse_genomes_project 11 116698003 116709463 + MGP_AJ_P0033767 Afmid protein_coding protein_coding MGP_AJ_T0033768.1 MGP_AJ_G0019423.1 mouse_genomes_project 11 116698010 116704851 + Afmid protein_coding retained_intron MGP_AJ_T0033769.1 MGP_AJ_G0019423.1 mouse_genomes_project 11 116704217 116707596 + Afmid protein_coding retained_intron MGP_AJ_T0033770.1 MGP_AJ_G0019423.1 mouse_genomes_project 11 116704343 116709460 + Afmid protein_coding retained_intron MGP_AJ_T0033771.1 MGP_AJ_G0019423.1 mouse_genomes_project 11 116704386 116707703 + Afmid protein_coding retained_intron MGP_AJ_T0028191.1 MGP_AJ_G0018053.1 mouse_genomes_project 11 19758292 19783842 - MGP_AJ_P0028191 B3gnt2 protein_coding protein_coding MGP_AJ_T0028192.1 MGP_AJ_G0018053.1 mouse_genomes_project 11 19758410 19784229 - MGP_AJ_P0028192 B3gnt2 protein_coding protein_coding MGP_AJ_T0028193.1 MGP_AJ_G0018053.1 mouse_genomes_project 11 19760128 19784701 - MGP_AJ_P0028193 B3gnt2 protein_coding protein_coding MGP_AJ_T0012549.1 MGP_AJ_G0010644.1 mouse_genomes_project 11 26975075 26975799 + processed_pseudogene processed_pseudogene MGP_AJ_T0028758.1 MGP_AJ_G0018197.1 mouse_genomes_project 11 46644045 46645118 + MGP_AJ_P0028758 Olfr1389 protein_coding protein_coding MGP_AJ_T0011316.1 MGP_AJ_G0009438.1 mouse_genomes_project 11 106482545 106482832 + Gm23120 misc_RNA misc_RNA MGP_AJ_T0009681.1 MGP_AJ_G0007803.1 mouse_genomes_project 11 50809688 50809759 + Mir6920 miRNA miRNA MGP_AJ_T0098387.1 MGP_AJ_G0036371.1 mouse_genomes_project 11 71297773 71298724 - pseudogene pseudogene MGP_AJ_T0029928.1 MGP_AJ_G0018500.1 mouse_genomes_project 11 67197018 67197856 + Naa38 protein_coding processed_transcript MGP_AJ_T0029929.1 MGP_AJ_G0018500.1 mouse_genomes_project 11 67197178 67198211 + MGP_AJ_P0029929 Naa38 protein_coding protein_coding MGP_AJ_T0029930.1 MGP_AJ_G0018500.1 mouse_genomes_project 11 67197345 67198211 + Naa38 protein_coding processed_transcript MGP_AJ_T0029931.1 MGP_AJ_G0018500.1 mouse_genomes_project 11 67197649 67198211 + Naa38 protein_coding processed_transcript MGP_AJ_T0003153.1 MGP_AJ_G0002925.1 mouse_genomes_project 11 48003677 48009153 - Gm12200 antisense antisense MGP_AJ_T0032016.1 MGP_AJ_G0019012.1 mouse_genomes_project 11 96182681 96184413 - Fbxo47 protein_coding retained_intron MGP_AJ_T0032017.1 MGP_AJ_G0019012.1 mouse_genomes_project 11 96182681 96216377 - MGP_AJ_P0032017 Fbxo47 protein_coding protein_coding MGP_AJ_T0032018.1 MGP_AJ_G0019012.1 mouse_genomes_project 11 96183231 96211640 - MGP_AJ_P0032018 Fbxo47 protein_coding unknown_likely_coding MGP_AJ_T0031124.1 MGP_AJ_G0018782.1 mouse_genomes_project 11 78512139 78730153 - MGP_AJ_P0031124 Myo1d protein_coding unknown_likely_coding MGP_AJ_T0031125.1 MGP_AJ_G0018782.1 mouse_genomes_project 11 78512148 78817340 - MGP_AJ_P0031125 Myo1d protein_coding protein_coding MGP_AJ_T0031126.1 MGP_AJ_G0018782.1 mouse_genomes_project 11 78615050 78817340 - MGP_AJ_P0031126 Myo1d protein_coding protein_coding MGP_AJ_T0031127.1 MGP_AJ_G0018782.1 mouse_genomes_project 11 78711137 78817318 - Myo1d protein_coding retained_intron MGP_AJ_T0028291.1 MGP_AJ_G0018073.1 mouse_genomes_project 11 25389386 25599856 - MGP_AJ_P0028291 Ccdc85a protein_coding protein_coding MGP_AJ_T0028292.1 MGP_AJ_G0018073.1 mouse_genomes_project 11 25389393 25599856 - MGP_AJ_P0028292 Ccdc85a protein_coding protein_coding MGP_AJ_T0028293.1 MGP_AJ_G0018073.1 mouse_genomes_project 11 25389393 25599884 - MGP_AJ_P0028293 Ccdc85a protein_coding protein_coding MGP_AJ_T0028294.1 MGP_AJ_G0018073.1 mouse_genomes_project 11 25390853 25599555 - MGP_AJ_P0028294 Ccdc85a protein_coding protein_coding MGP_AJ_T0028295.1 MGP_AJ_G0018073.1 mouse_genomes_project 11 25392518 25443299 - MGP_AJ_P0028295 Ccdc85a protein_coding protein_coding MGP_AJ_T0028296.1 MGP_AJ_G0018073.1 mouse_genomes_project 11 25392545 25591924 - MGP_AJ_P0028296 Ccdc85a protein_coding protein_coding MGP_AJ_T0028297.1 MGP_AJ_G0018073.1 mouse_genomes_project 11 25590697 25599826 - Ccdc85a protein_coding retained_intron MGP_AJ_T0031100.1 MGP_AJ_G0018779.1 mouse_genomes_project 11 78413802 78436049 + MGP_AJ_P0031100 Zfp207 protein_coding nonsense_mediated_decay MGP_AJ_T0031101.1 MGP_AJ_G0018779.1 mouse_genomes_project 11 78413802 78426765 + MGP_AJ_P0031101 Zfp207 protein_coding protein_coding MGP_AJ_T0031102.1 MGP_AJ_G0018779.1 mouse_genomes_project 11 78413826 78426768 + MGP_AJ_P0031102 Zfp207 protein_coding protein_coding MGP_AJ_T0031103.1 MGP_AJ_G0018779.1 mouse_genomes_project 11 78413854 78424803 + MGP_AJ_P0031103 Zfp207 protein_coding protein_coding MGP_AJ_T0031104.1 MGP_AJ_G0018779.1 mouse_genomes_project 11 78413920 78426086 + MGP_AJ_P0031104 Zfp207 protein_coding protein_coding MGP_AJ_T0031105.1 MGP_AJ_G0018779.1 mouse_genomes_project 11 78416389 78422404 + MGP_AJ_P0031105 Zfp207 protein_coding protein_coding MGP_AJ_T0031106.1 MGP_AJ_G0018779.1 mouse_genomes_project 11 78419663 78435137 + MGP_AJ_P0031106 Zfp207 protein_coding nonsense_mediated_decay MGP_AJ_T0012774.1 MGP_AJ_G0010869.1 mouse_genomes_project 11 112446209 112447011 + processed_pseudogene processed_pseudogene MGP_AJ_T0031895.1 MGP_AJ_G0018984.1 mouse_genomes_project 11 95227955 95229336 + Prr15l protein_coding processed_transcript MGP_AJ_T0031896.1 MGP_AJ_G0018984.1 mouse_genomes_project 11 95229145 95235401 + MGP_AJ_P0031896 Prr15l protein_coding protein_coding MGP_AJ_T0031897.1 MGP_AJ_G0018984.1 mouse_genomes_project 11 95229167 95237579 + MGP_AJ_P0031897 Prr15l protein_coding protein_coding MGP_AJ_T0031898.1 MGP_AJ_G0018984.1 mouse_genomes_project 11 95229237 95235396 + MGP_AJ_P0031898 Prr15l protein_coding protein_coding MGP_AJ_T0031899.1 MGP_AJ_G0018984.1 mouse_genomes_project 11 95231150 95235033 + MGP_AJ_P0031899 Prr15l protein_coding protein_coding MGP_AJ_T0099337.1 MGP_AJ_G0037303.1 mouse_genomes_project 11 66865928 66866029 + Gm25371 snRNA snRNA MGP_AJ_T0033535.1 MGP_AJ_G0019380.1 mouse_genomes_project 11 114863620 114895870 + MGP_AJ_P0033535 Unk protein_coding protein_coding MGP_AJ_T0033536.1 MGP_AJ_G0019380.1 mouse_genomes_project 11 114863620 114895870 + MGP_AJ_P0033536 Unk protein_coding protein_coding MGP_AJ_T0033537.1 MGP_AJ_G0019380.1 mouse_genomes_project 11 114863621 114875485 + Unk protein_coding processed_transcript MGP_AJ_T0033538.1 MGP_AJ_G0019380.1 mouse_genomes_project 11 114873119 114895870 + Unk protein_coding processed_transcript MGP_AJ_T0033539.1 MGP_AJ_G0019380.1 mouse_genomes_project 11 114883929 114888316 + Unk protein_coding retained_intron MGP_AJ_T0033540.1 MGP_AJ_G0019380.1 mouse_genomes_project 11 114887933 114890697 + Unk protein_coding retained_intron MGP_AJ_T0033541.1 MGP_AJ_G0019380.1 mouse_genomes_project 11 114890527 114893713 + Unk protein_coding retained_intron MGP_AJ_T0012585.1 MGP_AJ_G0010680.1 mouse_genomes_project 11 43725074 43725651 + processed_pseudogene processed_pseudogene MGP_AJ_T0099331.1 MGP_AJ_G0037297.1 mouse_genomes_project 11 58418643 58418740 + Gm23341 snRNA snRNA MGP_AJ_T0034120.1 MGP_AJ_G0019492.1 mouse_genomes_project 11 119631782 119634282 + MGP_AJ_P0034120 Rac3 protein_coding protein_coding MGP_AJ_T0034121.1 MGP_AJ_G0019492.1 mouse_genomes_project 11 119631885 119633919 + MGP_AJ_P0034121 Rac3 protein_coding protein_coding MGP_AJ_T0034122.1 MGP_AJ_G0019492.1 mouse_genomes_project 11 119632326 119633878 + Rac3 protein_coding processed_transcript MGP_AJ_T0006324.1 MGP_AJ_G0005274.1 mouse_genomes_project 11 94127891 94128904 - Gm11527 lincRNA lincRNA MGP_AJ_T0032545.1 MGP_AJ_G0019176.1 mouse_genomes_project 11 100067212 100076764 + MGP_AJ_P0032545 Tmem106a protein_coding protein_coding MGP_AJ_T0032546.1 MGP_AJ_G0019176.1 mouse_genomes_project 11 100067212 100076764 + MGP_AJ_P0032546 Tmem106a protein_coding protein_coding MGP_AJ_T0032547.1 MGP_AJ_G0019176.1 mouse_genomes_project 11 100067214 100074410 + Tmem106a protein_coding processed_transcript MGP_AJ_T0032548.1 MGP_AJ_G0019176.1 mouse_genomes_project 11 100067227 100073916 + MGP_AJ_P0032548 Tmem106a protein_coding protein_coding MGP_AJ_T0032549.1 MGP_AJ_G0019176.1 mouse_genomes_project 11 100067270 100073871 + MGP_AJ_P0032549 Tmem106a protein_coding protein_coding MGP_AJ_T0032550.1 MGP_AJ_G0019176.1 mouse_genomes_project 11 100071015 100075742 + Tmem106a protein_coding processed_transcript MGP_AJ_T0029332.1 MGP_AJ_G0018374.1 mouse_genomes_project 11 57359713 57363460 - Pld6 protein_coding processed_transcript MGP_AJ_T0029333.1 MGP_AJ_G0018374.1 mouse_genomes_project 11 57360516 57363457 - MGP_AJ_P0029333 Pld6 protein_coding protein_coding MGP_AJ_T0029353.1 MGP_AJ_G0018379.1 mouse_genomes_project 11 57546746 57548506 - MGP_AJ_P0029353 Rasd1 protein_coding protein_coding MGP_AJ_T0006346.1 MGP_AJ_G0005290.1 mouse_genomes_project 11 109237292 109239169 + Gm11682 lincRNA lincRNA MGP_AJ_T0006305.1 MGP_AJ_G0005261.1 mouse_genomes_project 11 86243139 86252037 - 2010015M23Rik lincRNA lincRNA MGP_AJ_T0012598.1 MGP_AJ_G0010693.1 mouse_genomes_project 11 48261378 48264771 + processed_pseudogene processed_pseudogene MGP_AJ_T0030316.1 MGP_AJ_G0018585.1 mouse_genomes_project 11 68701299 68799363 + MGP_AJ_P0030316 Rabep1 protein_coding protein_coding MGP_AJ_T0030317.1 MGP_AJ_G0018585.1 mouse_genomes_project 11 68701303 68797561 + Rabep1 protein_coding retained_intron MGP_AJ_T0030318.1 MGP_AJ_G0018585.1 mouse_genomes_project 11 68701313 68750598 + MGP_AJ_P0030318 Rabep1 protein_coding protein_coding MGP_AJ_T0030319.1 MGP_AJ_G0018585.1 mouse_genomes_project 11 68701320 68797556 + MGP_AJ_P0030319 Rabep1 protein_coding protein_coding MGP_AJ_T0030320.1 MGP_AJ_G0018585.1 mouse_genomes_project 11 68701446 68797198 + MGP_AJ_P0030320 Rabep1 protein_coding protein_coding MGP_AJ_T0030321.1 MGP_AJ_G0018585.1 mouse_genomes_project 11 68701463 68796904 + MGP_AJ_P0030321 Rabep1 protein_coding protein_coding MGP_AJ_T0030322.1 MGP_AJ_G0018585.1 mouse_genomes_project 11 68701496 68796741 + MGP_AJ_P0030322 Rabep1 protein_coding protein_coding MGP_AJ_T0030323.1 MGP_AJ_G0018585.1 mouse_genomes_project 11 68701496 68796741 + MGP_AJ_P0030323 Rabep1 protein_coding protein_coding MGP_AJ_T0017283.1 MGP_AJ_G0015193.1 mouse_genomes_project 11 112966274 112967218 + 1700092K14Rik processed_transcript processed_transcript MGP_AJ_T0028042.1 MGP_AJ_G0018017.1 mouse_genomes_project 11 8432428 8459012 + protein_coding processed_transcript MGP_AJ_T0028043.1 MGP_AJ_G0018017.1 mouse_genomes_project 11 8434588 8489312 + MGP_AJ_P0028043 protein_coding protein_coding MGP_AJ_T0028044.1 MGP_AJ_G0018017.1 mouse_genomes_project 11 8459740 8489310 + MGP_AJ_P0028044 protein_coding protein_coding MGP_AJ_T0003238.1 MGP_AJ_G0002996.1 mouse_genomes_project 11 78888419 78896339 - 4930507D10Rik antisense antisense MGP_AJ_T0031295.1 MGP_AJ_G0018838.1 mouse_genomes_project 11 82971576 82977996 - MGP_AJ_P0031295 Mrm1 protein_coding protein_coding MGP_AJ_T0031296.1 MGP_AJ_G0018838.1 mouse_genomes_project 11 82973223 82973871 - Mrm1 protein_coding retained_intron MGP_AJ_T0031297.1 MGP_AJ_G0018838.1 mouse_genomes_project 11 82973483 82977215 - Mrm1 protein_coding processed_transcript MGP_AJ_T0030997.1 MGP_AJ_G0018751.1 mouse_genomes_project 11 76483762 76495326 + MGP_AJ_P0030997 Poldip2 protein_coding protein_coding MGP_AJ_T0030998.1 MGP_AJ_G0018751.1 mouse_genomes_project 11 76483957 76485553 + Poldip2 protein_coding processed_transcript MGP_AJ_T0030999.1 MGP_AJ_G0018751.1 mouse_genomes_project 11 76483985 76494761 + MGP_AJ_P0030999 Poldip2 protein_coding nonsense_mediated_decay MGP_AJ_T0031000.1 MGP_AJ_G0018751.1 mouse_genomes_project 11 76488953 76490522 + Poldip2 protein_coding retained_intron MGP_AJ_T0031001.1 MGP_AJ_G0018751.1 mouse_genomes_project 11 76489543 76491175 + Poldip2 protein_coding retained_intron MGP_AJ_T0031002.1 MGP_AJ_G0018751.1 mouse_genomes_project 11 76490920 76491851 + Poldip2 protein_coding retained_intron MGP_AJ_T0003247.1 MGP_AJ_G0003003.1 mouse_genomes_project 11 83871902 83890348 - Bcas3os1 antisense antisense MGP_AJ_T0003248.1 MGP_AJ_G0003003.1 mouse_genomes_project 11 83874473 83890348 - Bcas3os1 antisense antisense MGP_AJ_T0100617.1 MGP_AJ_G0038583.1 mouse_genomes_project 11 77903553 77903685 - Gm24454 snoRNA snoRNA MGP_AJ_T0028117.1 MGP_AJ_G0018033.1 mouse_genomes_project 11 14855433 14870188 - MGP_AJ_P0028117 Etaa1 protein_coding protein_coding MGP_AJ_T0034158.1 MGP_AJ_G0019500.1 mouse_genomes_project 11 119861393 119871682 + MGP_AJ_P0034158 Slc16a3 protein_coding protein_coding MGP_AJ_T0034159.1 MGP_AJ_G0019500.1 mouse_genomes_project 11 119861966 119869654 + MGP_AJ_P0034159 Slc16a3 protein_coding protein_coding MGP_AJ_T0034160.1 MGP_AJ_G0019500.1 mouse_genomes_project 11 119861980 119871907 + MGP_AJ_P0034160 Slc16a3 protein_coding protein_coding MGP_AJ_T0034161.1 MGP_AJ_G0019500.1 mouse_genomes_project 11 119861984 119869768 + MGP_AJ_P0034161 Slc16a3 protein_coding protein_coding MGP_AJ_T0034162.1 MGP_AJ_G0019500.1 mouse_genomes_project 11 119861994 119873775 + MGP_AJ_P0034162 Slc16a3 protein_coding protein_coding MGP_AJ_T0034163.1 MGP_AJ_G0019500.1 mouse_genomes_project 11 119863601 119868180 + MGP_AJ_P0034163 Slc16a3 protein_coding protein_coding MGP_AJ_T0034164.1 MGP_AJ_G0019500.1 mouse_genomes_project 11 119864051 119867119 + Slc16a3 protein_coding processed_transcript MGP_AJ_T0034165.1 MGP_AJ_G0019500.1 mouse_genomes_project 11 119868132 119869138 + Slc16a3 protein_coding retained_intron MGP_AJ_T0012728.1 MGP_AJ_G0010823.1 mouse_genomes_project 11 94532312 94533918 + processed_pseudogene processed_pseudogene MGP_AJ_T0028652.1 MGP_AJ_G0018164.1 mouse_genomes_project 11 43503600 43568626 - MGP_AJ_P0028652 Itk protein_coding protein_coding MGP_AJ_T0028653.1 MGP_AJ_G0018164.1 mouse_genomes_project 11 43503600 43568648 - MGP_AJ_P0028653 Itk protein_coding protein_coding MGP_AJ_T0028654.1 MGP_AJ_G0018164.1 mouse_genomes_project 11 43522974 43568590 - MGP_AJ_P0028654 Itk protein_coding protein_coding MGP_AJ_T0028655.1 MGP_AJ_G0018164.1 mouse_genomes_project 11 43542405 43568594 - Itk protein_coding retained_intron MGP_AJ_T0003194.1 MGP_AJ_G0002960.1 mouse_genomes_project 11 60297848 60299755 - Gm12280 antisense antisense MGP_AJ_T0009675.1 MGP_AJ_G0007797.1 mouse_genomes_project 11 47168341 47168456 + Gm23492 miRNA miRNA MGP_AJ_T0033332.1 MGP_AJ_G0019343.1 mouse_genomes_project 11 113983759 113988417 - MGP_AJ_P0033332 Nat9 protein_coding protein_coding MGP_AJ_T0033333.1 MGP_AJ_G0019343.1 mouse_genomes_project 11 113983759 113988906 - MGP_AJ_P0033333 Nat9 protein_coding protein_coding MGP_AJ_T0033334.1 MGP_AJ_G0019343.1 mouse_genomes_project 11 113983759 113988394 - MGP_AJ_P0033334 Nat9 protein_coding protein_coding MGP_AJ_T0033335.1 MGP_AJ_G0019343.1 mouse_genomes_project 11 113983759 113988452 - MGP_AJ_P0033335 Nat9 protein_coding protein_coding MGP_AJ_T0033336.1 MGP_AJ_G0019343.1 mouse_genomes_project 11 113985407 113988324 - Nat9 protein_coding processed_transcript MGP_AJ_T0033337.1 MGP_AJ_G0019343.1 mouse_genomes_project 11 113985511 113988143 - Nat9 protein_coding processed_transcript MGP_AJ_T0033338.1 MGP_AJ_G0019343.1 mouse_genomes_project 11 113985701 113988904 - Nat9 protein_coding processed_transcript MGP_AJ_T0033339.1 MGP_AJ_G0019343.1 mouse_genomes_project 11 113985702 113988921 - Nat9 protein_coding processed_transcript MGP_AJ_T0033340.1 MGP_AJ_G0019343.1 mouse_genomes_project 11 113985885 113988338 - Nat9 protein_coding processed_transcript MGP_AJ_T0034013.1 MGP_AJ_G0019472.1 mouse_genomes_project 11 119375808 119383493 + Hgs protein_coding processed_transcript MGP_AJ_T0034014.1 MGP_AJ_G0019472.1 mouse_genomes_project 11 119375808 119385527 + MGP_AJ_P0034014 Hgs protein_coding protein_coding MGP_AJ_T0034015.1 MGP_AJ_G0019472.1 mouse_genomes_project 11 119375808 119392319 + MGP_AJ_P0034015 Hgs protein_coding protein_coding MGP_AJ_T0034016.1 MGP_AJ_G0019472.1 mouse_genomes_project 11 119375808 119392319 + MGP_AJ_P0034016 Hgs protein_coding protein_coding MGP_AJ_T0034017.1 MGP_AJ_G0019472.1 mouse_genomes_project 11 119375808 119392324 + MGP_AJ_P0034017 Hgs protein_coding protein_coding MGP_AJ_T0034018.1 MGP_AJ_G0019472.1 mouse_genomes_project 11 119385709 119388382 + MGP_AJ_P0034018 Hgs protein_coding protein_coding MGP_AJ_T0012458.1 MGP_AJ_G0010553.1 mouse_genomes_project 11 557183 557614 - processed_pseudogene processed_pseudogene MGP_AJ_T0012545.1 MGP_AJ_G0010640.1 mouse_genomes_project 11 26350625 26350883 + processed_pseudogene processed_pseudogene MGP_AJ_T0012758.1 MGP_AJ_G0010853.1 mouse_genomes_project 11 103609644 103610335 + processed_pseudogene processed_pseudogene MGP_AJ_T0012652.1 MGP_AJ_G0010747.1 mouse_genomes_project 11 64318453 64319432 + processed_pseudogene processed_pseudogene MGP_AJ_T0003193.1 MGP_AJ_G0002959.1 mouse_genomes_project 11 60282738 60283733 - Gm12279 antisense antisense MGP_AJ_T0028905.1 MGP_AJ_G0018237.1 mouse_genomes_project 11 48919057 48938697 + MGP_AJ_P0028905 Phykpl protein_coding protein_coding MGP_AJ_T0028906.1 MGP_AJ_G0018237.1 mouse_genomes_project 11 48919057 48937462 + MGP_AJ_P0028906 Phykpl protein_coding nonsense_mediated_decay MGP_AJ_T0028907.1 MGP_AJ_G0018237.1 mouse_genomes_project 11 48919089 48935536 + MGP_AJ_P0028907 Phykpl protein_coding protein_coding MGP_AJ_T0028908.1 MGP_AJ_G0018237.1 mouse_genomes_project 11 48919103 48931218 + Phykpl protein_coding retained_intron MGP_AJ_T0028909.1 MGP_AJ_G0018237.1 mouse_genomes_project 11 48919107 48921618 + Phykpl protein_coding retained_intron MGP_AJ_T0028910.1 MGP_AJ_G0018237.1 mouse_genomes_project 11 48919111 48927608 + Phykpl protein_coding retained_intron MGP_AJ_T0028911.1 MGP_AJ_G0018237.1 mouse_genomes_project 11 48925748 48928183 + Phykpl protein_coding retained_intron MGP_AJ_T0028912.1 MGP_AJ_G0018237.1 mouse_genomes_project 11 48933474 48935275 + Phykpl protein_coding retained_intron MGP_AJ_T0032913.1 MGP_AJ_G0019246.1 mouse_genomes_project 11 103189643 103246057 + MGP_AJ_P0032913 Itgb3 protein_coding protein_coding MGP_AJ_T0032914.1 MGP_AJ_G0019246.1 mouse_genomes_project 11 103219402 103245401 + Itgb3 protein_coding processed_transcript MGP_AJ_T0028497.1 MGP_AJ_G0018123.1 mouse_genomes_project 11 31307228 31310991 - MGP_AJ_P0028497 Foxi1 protein_coding protein_coding MGP_AJ_T0099324.1 MGP_AJ_G0037290.1 mouse_genomes_project 11 38163341 38163497 - Gm24446 snRNA snRNA MGP_AJ_T0031695.1 MGP_AJ_G0018928.1 mouse_genomes_project 11 92771785 92781175 - Rsad1 protein_coding processed_transcript MGP_AJ_T0031696.1 MGP_AJ_G0018928.1 mouse_genomes_project 11 92771785 92781119 - MGP_AJ_P0031696 Rsad1 protein_coding protein_coding MGP_AJ_T0031697.1 MGP_AJ_G0018928.1 mouse_genomes_project 11 92776523 92780715 - Rsad1 protein_coding processed_transcript MGP_AJ_T0031698.1 MGP_AJ_G0018928.1 mouse_genomes_project 11 92776588 92780525 - Rsad1 protein_coding processed_transcript MGP_AJ_T0012729.1 MGP_AJ_G0010824.1 mouse_genomes_project 11 94532341 94533918 + processed_pseudogene processed_pseudogene MGP_AJ_T0100577.1 MGP_AJ_G0038543.1 mouse_genomes_project 11 20099821 20099930 - Gm24398 snoRNA snoRNA MGP_AJ_T0029735.1 MGP_AJ_G0018459.1 mouse_genomes_project 11 65085598 65137982 + MGP_AJ_P0029735 Myh13 protein_coding protein_coding MGP_AJ_T0029736.1 MGP_AJ_G0018459.1 mouse_genomes_project 11 65085720 65137982 + MGP_AJ_P0029736 Myh13 protein_coding protein_coding MGP_AJ_T0029737.1 MGP_AJ_G0018459.1 mouse_genomes_project 11 65085723 65137898 + MGP_AJ_P0029737 Myh13 protein_coding unknown_likely_coding MGP_AJ_T0029738.1 MGP_AJ_G0018459.1 mouse_genomes_project 11 65091068 65137898 + MGP_AJ_P0029738 Myh13 protein_coding protein_coding MGP_AJ_T0029739.1 MGP_AJ_G0018459.1 mouse_genomes_project 11 65131270 65135600 + MGP_AJ_P0029739 Myh13 protein_coding protein_coding MGP_AJ_T0011304.1 MGP_AJ_G0009426.1 mouse_genomes_project 11 70230685 70230956 + Gm23224 misc_RNA misc_RNA MGP_AJ_T0030603.1 MGP_AJ_G0018668.1 mouse_genomes_project 11 72815133 72834512 - MGP_AJ_P0030603 Srr protein_coding protein_coding MGP_AJ_T0030604.1 MGP_AJ_G0018668.1 mouse_genomes_project 11 72815283 72834389 - Srr protein_coding processed_transcript MGP_AJ_T0030605.1 MGP_AJ_G0018668.1 mouse_genomes_project 11 72815567 72834487 - MGP_AJ_P0030605 Srr protein_coding protein_coding MGP_AJ_T0030606.1 MGP_AJ_G0018668.1 mouse_genomes_project 11 72815573 72834662 - MGP_AJ_P0030606 Srr protein_coding protein_coding MGP_AJ_T0030607.1 MGP_AJ_G0018668.1 mouse_genomes_project 11 72815593 72834487 - MGP_AJ_P0030607 Srr protein_coding protein_coding MGP_AJ_T0030608.1 MGP_AJ_G0018668.1 mouse_genomes_project 11 72818517 72834396 - MGP_AJ_P0030608 Srr protein_coding protein_coding MGP_AJ_T0030609.1 MGP_AJ_G0018668.1 mouse_genomes_project 11 72818920 72834374 - MGP_AJ_P0030609 Srr protein_coding protein_coding MGP_AJ_T0030610.1 MGP_AJ_G0018668.1 mouse_genomes_project 11 72819143 72834417 - Srr protein_coding retained_intron MGP_AJ_T0030611.1 MGP_AJ_G0018668.1 mouse_genomes_project 11 72819228 72834389 - Srr protein_coding retained_intron MGP_AJ_T0030612.1 MGP_AJ_G0018668.1 mouse_genomes_project 11 72819886 72834372 - MGP_AJ_P0030612 Srr protein_coding protein_coding MGP_AJ_T0012765.1 MGP_AJ_G0010860.1 mouse_genomes_project 11 105829995 105830532 + processed_pseudogene processed_pseudogene MGP_AJ_T0028857.1 MGP_AJ_G0018222.1 mouse_genomes_project 11 48134894 48136648 + Grm6 protein_coding processed_transcript MGP_AJ_T0028858.1 MGP_AJ_G0018222.1 mouse_genomes_project 11 48134894 48150532 + MGP_AJ_P0028858 Grm6 protein_coding protein_coding MGP_AJ_T0028859.1 MGP_AJ_G0018222.1 mouse_genomes_project 11 48135195 48150503 + MGP_AJ_P0028859 Grm6 protein_coding protein_coding MGP_AJ_T0028860.1 MGP_AJ_G0018222.1 mouse_genomes_project 11 48141031 48150534 + Grm6 protein_coding processed_transcript MGP_AJ_T0030283.1 MGP_AJ_G0018578.1 mouse_genomes_project 11 68511773 68517084 + MGP_AJ_P0030283 Eno3 protein_coding protein_coding MGP_AJ_T0030284.1 MGP_AJ_G0018578.1 mouse_genomes_project 11 68511773 68515377 + MGP_AJ_P0030284 Eno3 protein_coding protein_coding MGP_AJ_T0030285.1 MGP_AJ_G0018578.1 mouse_genomes_project 11 68511775 68517084 + MGP_AJ_P0030285 Eno3 protein_coding protein_coding MGP_AJ_T0030286.1 MGP_AJ_G0018578.1 mouse_genomes_project 11 68511856 68512990 + MGP_AJ_P0030286 Eno3 protein_coding protein_coding MGP_AJ_T0030287.1 MGP_AJ_G0018578.1 mouse_genomes_project 11 68512258 68513019 + MGP_AJ_P0030287 Eno3 protein_coding protein_coding MGP_AJ_T0030288.1 MGP_AJ_G0018578.1 mouse_genomes_project 11 68512367 68517081 + MGP_AJ_P0030288 Eno3 protein_coding protein_coding MGP_AJ_T0030289.1 MGP_AJ_G0018578.1 mouse_genomes_project 11 68512910 68515416 + Eno3 protein_coding retained_intron MGP_AJ_T0030290.1 MGP_AJ_G0018578.1 mouse_genomes_project 11 68515344 68516835 + MGP_AJ_P0030290 Eno3 protein_coding protein_coding MGP_AJ_T0029522.1 MGP_AJ_G0018411.1 mouse_genomes_project 11 59211821 59273693 - MGP_AJ_P0029522 Epn2 protein_coding protein_coding MGP_AJ_T0029523.1 MGP_AJ_G0018411.1 mouse_genomes_project 11 59211821 59273693 - MGP_AJ_P0029523 Epn2 protein_coding protein_coding MGP_AJ_T0029524.1 MGP_AJ_G0018411.1 mouse_genomes_project 11 59211821 59273677 - MGP_AJ_P0029524 Epn2 protein_coding protein_coding MGP_AJ_T0029525.1 MGP_AJ_G0018411.1 mouse_genomes_project 11 59211821 59273677 - MGP_AJ_P0029525 Epn2 protein_coding protein_coding MGP_AJ_T0029526.1 MGP_AJ_G0018411.1 mouse_genomes_project 11 59211822 59273695 - MGP_AJ_P0029526 Epn2 protein_coding protein_coding MGP_AJ_T0029527.1 MGP_AJ_G0018411.1 mouse_genomes_project 11 59211822 59273695 - MGP_AJ_P0029527 Epn2 protein_coding protein_coding MGP_AJ_T0029528.1 MGP_AJ_G0018411.1 mouse_genomes_project 11 59217739 59240943 - MGP_AJ_P0029528 Epn2 protein_coding protein_coding MGP_AJ_T0029529.1 MGP_AJ_G0018411.1 mouse_genomes_project 11 59227235 59238883 - MGP_AJ_P0029529 Epn2 protein_coding protein_coding MGP_AJ_T0029530.1 MGP_AJ_G0018411.1 mouse_genomes_project 11 59228963 59241112 - Epn2 protein_coding retained_intron MGP_AJ_T0029531.1 MGP_AJ_G0018411.1 mouse_genomes_project 11 59241075 59273666 - MGP_AJ_P0029531 Epn2 protein_coding protein_coding MGP_AJ_T0029532.1 MGP_AJ_G0018411.1 mouse_genomes_project 11 59241261 59273666 - MGP_AJ_P0029532 Epn2 protein_coding protein_coding MGP_AJ_T0029533.1 MGP_AJ_G0018411.1 mouse_genomes_project 11 59241318 59273670 - Epn2 protein_coding processed_transcript MGP_AJ_T0029534.1 MGP_AJ_G0018411.1 mouse_genomes_project 11 59249468 59273678 - Epn2 protein_coding processed_transcript MGP_AJ_T0030192.1 MGP_AJ_G0018558.1 mouse_genomes_project 11 68073226 68087109 - MGP_AJ_P0030192 Alox12 protein_coding protein_coding MGP_AJ_T0030193.1 MGP_AJ_G0018558.1 mouse_genomes_project 11 68080720 68087097 - MGP_AJ_P0030193 Alox12 protein_coding protein_coding MGP_AJ_T0031910.1 MGP_AJ_G0018989.1 mouse_genomes_project 11 95343416 95350615 - MGP_AJ_P0031910 Lrrc46 protein_coding protein_coding MGP_AJ_T0031911.1 MGP_AJ_G0018989.1 mouse_genomes_project 11 95343477 95349901 - MGP_AJ_P0031911 Lrrc46 protein_coding unknown_likely_coding MGP_AJ_T0102234.1 MGP_AJ_G0039977.1 mouse_genomes_project 11 56058005 56058397 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0099334.1 MGP_AJ_G0037300.1 mouse_genomes_project 11 63385526 63385636 + Gm26128 snRNA snRNA MGP_AJ_T0029658.1 MGP_AJ_G0018436.1 mouse_genomes_project 11 60810945 60844801 + MGP_AJ_P0029658 Tekt3 protein_coding protein_coding MGP_AJ_T0029703.1 MGP_AJ_G0018449.1 mouse_genomes_project 11 63973203 64280837 - MGP_AJ_P0029703 Shisa6 protein_coding protein_coding MGP_AJ_T0029704.1 MGP_AJ_G0018449.1 mouse_genomes_project 11 63978621 64280837 - MGP_AJ_P0029704 Shisa6 protein_coding protein_coding MGP_AJ_T0029705.1 MGP_AJ_G0018449.1 mouse_genomes_project 11 64136226 64257313 - Shisa6 protein_coding processed_transcript MGP_AJ_T0028592.1 MGP_AJ_G0018146.1 mouse_genomes_project 11 40682662 40749617 + MGP_AJ_P0028592 Ccnjl protein_coding protein_coding MGP_AJ_T0028593.1 MGP_AJ_G0018146.1 mouse_genomes_project 11 40683124 40713683 + Ccnjl protein_coding processed_transcript MGP_AJ_T0028935.1 MGP_AJ_G0018245.1 mouse_genomes_project 11 49102032 49130057 + MGP_AJ_P0028935 Sar1b protein_coding protein_coding MGP_AJ_T0028936.1 MGP_AJ_G0018245.1 mouse_genomes_project 11 49102039 49120878 + Sar1b protein_coding processed_transcript MGP_AJ_T0028801.1 MGP_AJ_G0018211.1 mouse_genomes_project 11 47470784 47483187 - MGP_AJ_P0028801 Sqstm1 protein_coding protein_coding MGP_AJ_T0028802.1 MGP_AJ_G0018211.1 mouse_genomes_project 11 47471570 47483223 - MGP_AJ_P0028802 Sqstm1 protein_coding protein_coding MGP_AJ_T0028803.1 MGP_AJ_G0018211.1 mouse_genomes_project 11 47471585 47474373 - MGP_AJ_P0028803 Sqstm1 protein_coding protein_coding MGP_AJ_T0028804.1 MGP_AJ_G0018211.1 mouse_genomes_project 11 47472029 47483161 - MGP_AJ_P0028804 Sqstm1 protein_coding protein_coding MGP_AJ_T0028805.1 MGP_AJ_G0018211.1 mouse_genomes_project 11 47473730 47478496 - Sqstm1 protein_coding retained_intron MGP_AJ_T0028806.1 MGP_AJ_G0018211.1 mouse_genomes_project 11 47473861 47474537 - Sqstm1 protein_coding retained_intron MGP_AJ_T0028807.1 MGP_AJ_G0018211.1 mouse_genomes_project 11 47478074 47479715 - Sqstm1 protein_coding retained_intron MGP_AJ_T0028573.1 MGP_AJ_G0018143.1 mouse_genomes_project 11 40573189 40579178 - MGP_AJ_P0028573 Pttg1 protein_coding protein_coding MGP_AJ_T0028574.1 MGP_AJ_G0018143.1 mouse_genomes_project 11 40573203 40578901 - MGP_AJ_P0028574 Pttg1 protein_coding protein_coding MGP_AJ_T0028575.1 MGP_AJ_G0018143.1 mouse_genomes_project 11 40573204 40575898 - MGP_AJ_P0028575 Pttg1 protein_coding protein_coding MGP_AJ_T0028576.1 MGP_AJ_G0018143.1 mouse_genomes_project 11 40573208 40579122 - MGP_AJ_P0028576 Pttg1 protein_coding protein_coding MGP_AJ_T0028577.1 MGP_AJ_G0018143.1 mouse_genomes_project 11 40573212 40579137 - MGP_AJ_P0028577 Pttg1 protein_coding protein_coding MGP_AJ_T0028578.1 MGP_AJ_G0018143.1 mouse_genomes_project 11 40573213 40578883 - MGP_AJ_P0028578 Pttg1 protein_coding protein_coding MGP_AJ_T0028579.1 MGP_AJ_G0018143.1 mouse_genomes_project 11 40573217 40578901 - MGP_AJ_P0028579 Pttg1 protein_coding nonsense_mediated_decay MGP_AJ_T0028580.1 MGP_AJ_G0018143.1 mouse_genomes_project 11 40573970 40579147 - MGP_AJ_P0028580 Pttg1 protein_coding protein_coding MGP_AJ_T0028581.1 MGP_AJ_G0018143.1 mouse_genomes_project 11 40575826 40579038 - Pttg1 protein_coding processed_transcript MGP_AJ_T0028582.1 MGP_AJ_G0018143.1 mouse_genomes_project 11 40577541 40579133 - Pttg1 protein_coding retained_intron MGP_AJ_T0012683.1 MGP_AJ_G0010778.1 mouse_genomes_project 11 75091871 75092769 + processed_pseudogene processed_pseudogene MGP_AJ_T0033331.1 MGP_AJ_G0019342.1 mouse_genomes_project 11 113964013 113982110 + MGP_AJ_P0033331 Slc9a3r1 protein_coding protein_coding MGP_AJ_T0033379.1 MGP_AJ_G0019354.1 mouse_genomes_project 11 114222924 114225380 - Atp5h protein_coding processed_transcript MGP_AJ_T0033380.1 MGP_AJ_G0019354.1 mouse_genomes_project 11 114222924 114224254 - Atp5h protein_coding processed_transcript MGP_AJ_T0033381.1 MGP_AJ_G0019354.1 mouse_genomes_project 11 114222924 114227332 - MGP_AJ_P0033381 Atp5h protein_coding protein_coding MGP_AJ_T0033382.1 MGP_AJ_G0019354.1 mouse_genomes_project 11 114222924 114227287 - MGP_AJ_P0033382 Atp5h protein_coding protein_coding MGP_AJ_T0033383.1 MGP_AJ_G0019354.1 mouse_genomes_project 11 114222924 114227332 - MGP_AJ_P0033383 Atp5h protein_coding protein_coding MGP_AJ_T0033384.1 MGP_AJ_G0019354.1 mouse_genomes_project 11 114222983 114225865 - MGP_AJ_P0033384 Atp5h protein_coding protein_coding MGP_AJ_T0033385.1 MGP_AJ_G0019354.1 mouse_genomes_project 11 114223053 114226099 - MGP_AJ_P0033385 Atp5h protein_coding protein_coding MGP_AJ_T0033386.1 MGP_AJ_G0019354.1 mouse_genomes_project 11 114224088 114226431 - Atp5h protein_coding processed_transcript MGP_AJ_T0030178.1 MGP_AJ_G0018556.1 mouse_genomes_project 11 68067060 68071619 - MGP_AJ_P0030178 protein_coding nonsense_mediated_decay MGP_AJ_T0030183.1 MGP_AJ_G0018556.1 mouse_genomes_project 11 68067104 68071619 - MGP_AJ_P0030183 protein_coding nonsense_mediated_decay MGP_AJ_T0029841.1 MGP_AJ_G0018482.1 mouse_genomes_project 11 66805647 66826930 + MGP_AJ_P0029841 Ctc1 protein_coding protein_coding MGP_AJ_T0029842.1 MGP_AJ_G0018482.1 mouse_genomes_project 11 66805671 66815620 + Ctc1 protein_coding retained_intron MGP_AJ_T0029843.1 MGP_AJ_G0018482.1 mouse_genomes_project 11 66805831 66826928 + MGP_AJ_P0029843 Ctc1 protein_coding nonsense_mediated_decay MGP_AJ_T0029844.1 MGP_AJ_G0018482.1 mouse_genomes_project 11 66805842 66826925 + MGP_AJ_P0029844 Ctc1 protein_coding protein_coding MGP_AJ_T0029845.1 MGP_AJ_G0018482.1 mouse_genomes_project 11 66805879 66813224 + Ctc1 protein_coding processed_transcript MGP_AJ_T0029846.1 MGP_AJ_G0018482.1 mouse_genomes_project 11 66818142 66819667 + Ctc1 protein_coding retained_intron MGP_AJ_T0029847.1 MGP_AJ_G0018482.1 mouse_genomes_project 11 66819528 66822024 + Ctc1 protein_coding processed_transcript MGP_AJ_T0029848.1 MGP_AJ_G0018482.1 mouse_genomes_project 11 66821704 66825403 + Ctc1 protein_coding processed_transcript MGP_AJ_T0029849.1 MGP_AJ_G0018482.1 mouse_genomes_project 11 66824329 66826276 + Ctc1 protein_coding retained_intron MGP_AJ_T0029850.1 MGP_AJ_G0018482.1 mouse_genomes_project 11 66824975 66826261 + Ctc1 protein_coding retained_intron MGP_AJ_T0029851.1 MGP_AJ_G0018482.1 mouse_genomes_project 11 66825333 66826635 + Ctc1 protein_coding retained_intron MGP_AJ_T0028392.1 MGP_AJ_G0018093.1 mouse_genomes_project 11 28011941 28021467 - MGP_AJ_P0028392 Chac2 protein_coding protein_coding MGP_AJ_T0028393.1 MGP_AJ_G0018093.1 mouse_genomes_project 11 28012186 28021451 - MGP_AJ_P0028393 Chac2 protein_coding protein_coding MGP_AJ_T0009668.1 MGP_AJ_G0007790.1 mouse_genomes_project 11 32909024 32909110 + Mir103-1 miRNA miRNA MGP_AJ_T0099384.1 MGP_AJ_G0037350.1 mouse_genomes_project 11 114418562 114418669 + Gm25364 snRNA snRNA MGP_AJ_T0012667.1 MGP_AJ_G0010762.1 mouse_genomes_project 11 68919446 68920196 - processed_pseudogene processed_pseudogene MGP_AJ_T0031153.1 MGP_AJ_G0018797.1 mouse_genomes_project 11 80826132 80847887 + MGP_AJ_P0031153 Lig3 protein_coding protein_coding MGP_AJ_T0031154.1 MGP_AJ_G0018797.1 mouse_genomes_project 11 80826159 80849299 + MGP_AJ_P0031154 Lig3 protein_coding protein_coding MGP_AJ_T0031155.1 MGP_AJ_G0018797.1 mouse_genomes_project 11 80826166 80841566 + Lig3 protein_coding retained_intron MGP_AJ_T0031156.1 MGP_AJ_G0018797.1 mouse_genomes_project 11 80826209 80845678 + MGP_AJ_P0031156 Lig3 protein_coding protein_coding MGP_AJ_T0031157.1 MGP_AJ_G0018797.1 mouse_genomes_project 11 80826217 80847050 + MGP_AJ_P0031157 Lig3 protein_coding protein_coding MGP_AJ_T0031158.1 MGP_AJ_G0018797.1 mouse_genomes_project 11 80826217 80847051 + MGP_AJ_P0031158 Lig3 protein_coding protein_coding MGP_AJ_T0031159.1 MGP_AJ_G0018797.1 mouse_genomes_project 11 80826222 80835329 + MGP_AJ_P0031159 Lig3 protein_coding protein_coding MGP_AJ_T0031160.1 MGP_AJ_G0018797.1 mouse_genomes_project 11 80826222 80835330 + MGP_AJ_P0031160 Lig3 protein_coding protein_coding MGP_AJ_T0031161.1 MGP_AJ_G0018797.1 mouse_genomes_project 11 80826227 80849223 + MGP_AJ_P0031161 Lig3 protein_coding protein_coding MGP_AJ_T0031162.1 MGP_AJ_G0018797.1 mouse_genomes_project 11 80840709 80844575 + Lig3 protein_coding retained_intron MGP_AJ_T0031163.1 MGP_AJ_G0018797.1 mouse_genomes_project 11 80842242 80844592 + Lig3 protein_coding retained_intron MGP_AJ_T0031164.1 MGP_AJ_G0018797.1 mouse_genomes_project 11 80843373 80849299 + MGP_AJ_P0031164 Lig3 protein_coding protein_coding MGP_AJ_T0006250.1 MGP_AJ_G0005221.1 mouse_genomes_project 11 59584022 59586724 - A530017D24Rik lincRNA lincRNA MGP_AJ_T0006251.1 MGP_AJ_G0005221.1 mouse_genomes_project 11 59584657 59587513 - A530017D24Rik lincRNA lincRNA MGP_AJ_T0027780.1 MGP_AJ_G0017956.1 mouse_genomes_project 11 1429554 1542957 - MGP_AJ_P0027780 Mtmr3 protein_coding protein_coding MGP_AJ_T0027781.1 MGP_AJ_G0017956.1 mouse_genomes_project 11 1429561 1437054 - Mtmr3 protein_coding processed_transcript MGP_AJ_T0027782.1 MGP_AJ_G0017956.1 mouse_genomes_project 11 1429561 1496172 - MGP_AJ_P0027782 Mtmr3 protein_coding protein_coding MGP_AJ_T0027783.1 MGP_AJ_G0017956.1 mouse_genomes_project 11 1429576 1478211 - MGP_AJ_P0027783 Mtmr3 protein_coding protein_coding MGP_AJ_T0027784.1 MGP_AJ_G0017956.1 mouse_genomes_project 11 1431246 1543005 - MGP_AJ_P0027784 Mtmr3 protein_coding nonsense_mediated_decay MGP_AJ_T0027785.1 MGP_AJ_G0017956.1 mouse_genomes_project 11 1431439 1478211 - MGP_AJ_P0027785 Mtmr3 protein_coding protein_coding MGP_AJ_T0027786.1 MGP_AJ_G0017956.1 mouse_genomes_project 11 1440494 1442006 - Mtmr3 protein_coding processed_transcript MGP_AJ_T0030565.1 MGP_AJ_G0018660.1 mouse_genomes_project 11 72292789 72501101 - MGP_AJ_P0030565 Rap1gap2 protein_coding protein_coding MGP_AJ_T0030566.1 MGP_AJ_G0018660.1 mouse_genomes_project 11 72292916 72501073 - MGP_AJ_P0030566 Rap1gap2 protein_coding protein_coding MGP_AJ_T0030567.1 MGP_AJ_G0018660.1 mouse_genomes_project 11 72292917 72317865 - Rap1gap2 protein_coding processed_transcript MGP_AJ_T0030568.1 MGP_AJ_G0018660.1 mouse_genomes_project 11 72293819 72434225 - MGP_AJ_P0030568 Rap1gap2 protein_coding unknown_likely_coding MGP_AJ_T0030569.1 MGP_AJ_G0018660.1 mouse_genomes_project 11 72347447 72501039 - MGP_AJ_P0030569 Rap1gap2 protein_coding protein_coding MGP_AJ_T0028395.1 MGP_AJ_G0018094.1 mouse_genomes_project 11 28406444 28419239 - MGP_AJ_P0028395 Stc2 protein_coding protein_coding MGP_AJ_T0028396.1 MGP_AJ_G0018094.1 mouse_genomes_project 11 28407129 28418268 - Stc2 protein_coding processed_transcript MGP_AJ_T0028397.1 MGP_AJ_G0018094.1 mouse_genomes_project 11 28414621 28417331 - Stc2 protein_coding processed_transcript MGP_AJ_T0028398.1 MGP_AJ_G0018094.1 mouse_genomes_project 11 28417163 28419212 - Stc2 protein_coding processed_transcript MGP_AJ_T0028399.1 MGP_AJ_G0018094.1 mouse_genomes_project 11 28417167 28418221 - Stc2 protein_coding processed_transcript MGP_AJ_T0031066.1 MGP_AJ_G0018771.1 mouse_genomes_project 11 78067209 78102225 - MGP_AJ_P0031066 Crlf3 protein_coding protein_coding MGP_AJ_T0031067.1 MGP_AJ_G0018771.1 mouse_genomes_project 11 78068200 78102242 - MGP_AJ_P0031067 Crlf3 protein_coding nonsense_mediated_decay MGP_AJ_T0031068.1 MGP_AJ_G0018771.1 mouse_genomes_project 11 78068200 78102225 - MGP_AJ_P0031068 Crlf3 protein_coding nonsense_mediated_decay MGP_AJ_T0031069.1 MGP_AJ_G0018771.1 mouse_genomes_project 11 78077027 78102249 - Crlf3 protein_coding processed_transcript MGP_AJ_T0031070.1 MGP_AJ_G0018771.1 mouse_genomes_project 11 78077149 78078956 - Crlf3 protein_coding retained_intron MGP_AJ_T0031071.1 MGP_AJ_G0018771.1 mouse_genomes_project 11 78080368 78102174 - MGP_AJ_P0031071 Crlf3 protein_coding nonsense_mediated_decay MGP_AJ_T0031072.1 MGP_AJ_G0018771.1 mouse_genomes_project 11 78083761 78102251 - Crlf3 protein_coding retained_intron MGP_AJ_T0028762.1 MGP_AJ_G0018201.1 mouse_genomes_project 11 46717216 46718250 + MGP_AJ_P0028762 Olfr1384 protein_coding protein_coding MGP_AJ_T0009679.1 MGP_AJ_G0007801.1 mouse_genomes_project 11 49440090 49440201 - Gm24157 miRNA miRNA MGP_AJ_T0029750.1 MGP_AJ_G0018462.1 mouse_genomes_project 11 65466199 65474278 + MGP_AJ_P0029750 Rcvrn protein_coding protein_coding MGP_AJ_T0012664.1 MGP_AJ_G0010759.1 mouse_genomes_project 11 68617466 68617887 + processed_pseudogene processed_pseudogene MGP_AJ_T0012625.1 MGP_AJ_G0010720.1 mouse_genomes_project 11 55578483 55579151 - processed_pseudogene processed_pseudogene MGP_AJ_T0012685.1 MGP_AJ_G0010780.1 mouse_genomes_project 11 75589411 75589591 + processed_pseudogene processed_pseudogene MGP_AJ_T0029313.1 MGP_AJ_G0018369.1 mouse_genomes_project 11 57055662 57076192 - MGP_AJ_P0029313 Zkscan17 protein_coding protein_coding MGP_AJ_T0029314.1 MGP_AJ_G0018369.1 mouse_genomes_project 11 57069534 57076243 - Zkscan17 protein_coding processed_transcript MGP_AJ_T0029315.1 MGP_AJ_G0018369.1 mouse_genomes_project 11 57074175 57096916 - Zkscan17 protein_coding processed_transcript MGP_AJ_T0029316.1 MGP_AJ_G0018369.1 mouse_genomes_project 11 57074181 57076243 - Zkscan17 protein_coding processed_transcript MGP_AJ_T0029317.1 MGP_AJ_G0018369.1 mouse_genomes_project 11 57095736 57097036 - Zkscan17 protein_coding processed_transcript MGP_AJ_T0030561.1 MGP_AJ_G0018657.1 mouse_genomes_project 11 72239119 72240067 - MGP_AJ_P0030561 Olfr410 protein_coding protein_coding MGP_AJ_T0030446.1 MGP_AJ_G0018612.1 mouse_genomes_project 11 70591786 70626882 + Ankfy1 protein_coding retained_intron MGP_AJ_T0030447.1 MGP_AJ_G0018612.1 mouse_genomes_project 11 70591786 70673120 + MGP_AJ_P0030447 Ankfy1 protein_coding protein_coding MGP_AJ_T0030448.1 MGP_AJ_G0018612.1 mouse_genomes_project 11 70591786 70672183 + MGP_AJ_P0030448 Ankfy1 protein_coding nonsense_mediated_decay MGP_AJ_T0030449.1 MGP_AJ_G0018612.1 mouse_genomes_project 11 70613898 70668550 + Ankfy1 protein_coding processed_transcript MGP_AJ_T0030450.1 MGP_AJ_G0018612.1 mouse_genomes_project 11 70662713 70663688 + Ankfy1 protein_coding retained_intron MGP_AJ_T0030451.1 MGP_AJ_G0018612.1 mouse_genomes_project 11 70667289 70668715 + Ankfy1 protein_coding retained_intron MGP_AJ_T0100626.1 MGP_AJ_G0038592.1 mouse_genomes_project 11 97362565 97362680 + Gm26394 snoRNA snoRNA MGP_AJ_T0030772.1 MGP_AJ_G0018704.1 mouse_genomes_project 11 74670681 74707770 - MGP_AJ_P0030772 Gosr1 protein_coding protein_coding MGP_AJ_T0030773.1 MGP_AJ_G0018704.1 mouse_genomes_project 11 74692610 74707758 - Gosr1 protein_coding processed_transcript MGP_AJ_T0099347.1 MGP_AJ_G0037313.1 mouse_genomes_project 11 77601395 77601499 + Gm23293 snRNA snRNA MGP_AJ_T0011301.1 MGP_AJ_G0009423.1 mouse_genomes_project 11 55449725 55449996 + Gm26025 misc_RNA misc_RNA MGP_AJ_T0031188.1 MGP_AJ_G0018803.1 mouse_genomes_project 11 81001905 81002727 + Slfn5 protein_coding processed_transcript MGP_AJ_T0031189.1 MGP_AJ_G0018803.1 mouse_genomes_project 11 81002651 81010589 + MGP_AJ_P0031189 Slfn5 protein_coding protein_coding MGP_AJ_T0031190.1 MGP_AJ_G0018803.1 mouse_genomes_project 11 81002658 81013603 + MGP_AJ_P0031190 Slfn5 protein_coding protein_coding MGP_AJ_T0031191.1 MGP_AJ_G0018803.1 mouse_genomes_project 11 81005205 81012483 + MGP_AJ_P0031191 Slfn5 protein_coding protein_coding MGP_AJ_T0033254.1 MGP_AJ_G0019322.1 mouse_genomes_project 11 112466221 112478804 - MGP_AJ_P0033254 Cpsf4l protein_coding protein_coding MGP_AJ_T0033255.1 MGP_AJ_G0019322.1 mouse_genomes_project 11 112466221 112478310 - MGP_AJ_P0033255 Cpsf4l protein_coding protein_coding MGP_AJ_T0033256.1 MGP_AJ_G0019322.1 mouse_genomes_project 11 112466221 112477751 - MGP_AJ_P0033256 Cpsf4l protein_coding protein_coding MGP_AJ_T0033257.1 MGP_AJ_G0019322.1 mouse_genomes_project 11 112466221 112478304 - MGP_AJ_P0033257 Cpsf4l protein_coding protein_coding MGP_AJ_T0033258.1 MGP_AJ_G0019322.1 mouse_genomes_project 11 112470775 112478308 - Cpsf4l protein_coding retained_intron MGP_AJ_T0006235.1 MGP_AJ_G0005207.1 mouse_genomes_project 11 43801054 43809471 - Gm4926 lincRNA lincRNA MGP_AJ_T0009737.1 MGP_AJ_G0007859.1 mouse_genomes_project 11 95372242 95372349 + Mir8103 miRNA miRNA MGP_AJ_T0028945.1 MGP_AJ_G0018249.1 mouse_genomes_project 11 49341908 49430262 + MGP_AJ_P0028945 Cdkl3 protein_coding protein_coding MGP_AJ_T0028946.1 MGP_AJ_G0018249.1 mouse_genomes_project 11 49345459 49381242 + MGP_AJ_P0028946 Cdkl3 protein_coding protein_coding MGP_AJ_T0028947.1 MGP_AJ_G0018249.1 mouse_genomes_project 11 49345459 49425146 + MGP_AJ_P0028947 Cdkl3 protein_coding protein_coding MGP_AJ_T0028948.1 MGP_AJ_G0018249.1 mouse_genomes_project 11 49345459 49374451 + MGP_AJ_P0028948 Cdkl3 protein_coding protein_coding MGP_AJ_T0028949.1 MGP_AJ_G0018249.1 mouse_genomes_project 11 49345459 49378814 + MGP_AJ_P0028949 Cdkl3 protein_coding protein_coding MGP_AJ_T0028950.1 MGP_AJ_G0018249.1 mouse_genomes_project 11 49345459 49378814 + MGP_AJ_P0028950 Cdkl3 protein_coding protein_coding MGP_AJ_T0028951.1 MGP_AJ_G0018249.1 mouse_genomes_project 11 49345463 49369563 + MGP_AJ_P0028951 Cdkl3 protein_coding protein_coding MGP_AJ_T0028952.1 MGP_AJ_G0018249.1 mouse_genomes_project 11 49345479 49374518 + MGP_AJ_P0028952 Cdkl3 protein_coding protein_coding MGP_AJ_T0028953.1 MGP_AJ_G0018249.1 mouse_genomes_project 11 49345492 49361104 + MGP_AJ_P0028953 Cdkl3 protein_coding protein_coding MGP_AJ_T0028954.1 MGP_AJ_G0018249.1 mouse_genomes_project 11 49345503 49398180 + MGP_AJ_P0028954 Cdkl3 protein_coding nonsense_mediated_decay MGP_AJ_T0028955.1 MGP_AJ_G0018249.1 mouse_genomes_project 11 49345528 49378814 + MGP_AJ_P0028955 Cdkl3 protein_coding protein_coding MGP_AJ_T0028956.1 MGP_AJ_G0018249.1 mouse_genomes_project 11 49368752 49425588 + MGP_AJ_P0028956 Cdkl3 protein_coding nonsense_mediated_decay MGP_AJ_T0028957.1 MGP_AJ_G0018249.1 mouse_genomes_project 11 49368976 49374373 + MGP_AJ_P0028957 Cdkl3 protein_coding protein_coding MGP_AJ_T0028958.1 MGP_AJ_G0018249.1 mouse_genomes_project 11 49373010 49430257 + MGP_AJ_P0028958 Cdkl3 protein_coding nonsense_mediated_decay MGP_AJ_T0028959.1 MGP_AJ_G0018249.1 mouse_genomes_project 11 49373095 49430263 + MGP_AJ_P0028959 Cdkl3 protein_coding protein_coding MGP_AJ_T0028960.1 MGP_AJ_G0018249.1 mouse_genomes_project 11 49374175 49430255 + MGP_AJ_P0028960 Cdkl3 protein_coding protein_coding MGP_AJ_T0012642.1 MGP_AJ_G0010737.1 mouse_genomes_project 11 59114312 59114726 - processed_pseudogene processed_pseudogene MGP_AJ_T0000847.1 MGP_AJ_G0000782.1 mouse_genomes_project 11 42460930 42482267 - TEC TEC MGP_AJ_T0029706.1 MGP_AJ_G0018450.1 mouse_genomes_project 11 64666765 64684685 + MGP_AJ_P0029706 Pirt protein_coding protein_coding MGP_AJ_T0012553.1 MGP_AJ_G0010648.1 mouse_genomes_project 11 27728878 27729616 - processed_pseudogene processed_pseudogene MGP_AJ_T0017185.1 MGP_AJ_G0015144.1 mouse_genomes_project 11 50968226 50970844 - A430108G06Rik processed_transcript processed_transcript MGP_AJ_T0017186.1 MGP_AJ_G0015144.1 mouse_genomes_project 11 50968302 50970852 - A430108G06Rik processed_transcript processed_transcript MGP_AJ_T0033222.1 MGP_AJ_G0019314.1 mouse_genomes_project 11 109671234 109733935 + MGP_AJ_P0033222 Kcnj16 protein_coding protein_coding MGP_AJ_T0033223.1 MGP_AJ_G0019314.1 mouse_genomes_project 11 109671234 109733938 + MGP_AJ_P0033223 Kcnj16 protein_coding protein_coding MGP_AJ_T0033224.1 MGP_AJ_G0019314.1 mouse_genomes_project 11 109671265 109730792 + MGP_AJ_P0033224 Kcnj16 protein_coding protein_coding MGP_AJ_T0033225.1 MGP_AJ_G0019314.1 mouse_genomes_project 11 109703352 109733938 + MGP_AJ_P0033225 Kcnj16 protein_coding protein_coding MGP_AJ_T0033226.1 MGP_AJ_G0019314.1 mouse_genomes_project 11 109729829 109730681 + MGP_AJ_P0033226 Kcnj16 protein_coding protein_coding MGP_AJ_T0033227.1 MGP_AJ_G0019314.1 mouse_genomes_project 11 109729829 109733935 + MGP_AJ_P0033227 Kcnj16 protein_coding protein_coding MGP_AJ_T0012581.1 MGP_AJ_G0010676.1 mouse_genomes_project 11 41557764 41557924 - processed_pseudogene processed_pseudogene MGP_AJ_T0029806.1 MGP_AJ_G0018475.1 mouse_genomes_project 11 66675416 66682644 + MGP_AJ_P0029806 Rnf222 protein_coding protein_coding MGP_AJ_T0003215.1 MGP_AJ_G0002976.1 mouse_genomes_project 11 66360781 66364491 - Ccdc42os antisense antisense MGP_AJ_T0029181.1 MGP_AJ_G0018309.1 mouse_genomes_project 11 55298962 55303069 - MGP_AJ_P0029181 Hand1 protein_coding protein_coding MGP_AJ_T0029182.1 MGP_AJ_G0018309.1 mouse_genomes_project 11 55298964 55302410 - MGP_AJ_P0029182 Hand1 protein_coding protein_coding MGP_AJ_T0029183.1 MGP_AJ_G0018309.1 mouse_genomes_project 11 55301956 55303069 - MGP_AJ_P0029183 Hand1 protein_coding protein_coding MGP_AJ_T0034223.1 MGP_AJ_G0019516.1 mouse_genomes_project 11 120341521 120357088 + MGP_AJ_P0034223 Fn3k protein_coding protein_coding MGP_AJ_T0034224.1 MGP_AJ_G0019516.1 mouse_genomes_project 11 120341575 120349590 + MGP_AJ_P0034224 Fn3k protein_coding protein_coding MGP_AJ_T0034225.1 MGP_AJ_G0019516.1 mouse_genomes_project 11 120341576 120350114 + MGP_AJ_P0034225 Fn3k protein_coding protein_coding MGP_AJ_T0032157.1 MGP_AJ_G0019046.1 mouse_genomes_project 11 97286735 97336428 + MGP_AJ_P0032157 Rara protein_coding protein_coding MGP_AJ_T0032158.1 MGP_AJ_G0019046.1 mouse_genomes_project 11 97296613 97336428 + MGP_AJ_P0032158 Rara protein_coding protein_coding MGP_AJ_T0032159.1 MGP_AJ_G0019046.1 mouse_genomes_project 11 97296633 97337198 + MGP_AJ_P0032159 Rara protein_coding protein_coding MGP_AJ_T0032160.1 MGP_AJ_G0019046.1 mouse_genomes_project 11 97297243 97309817 + Rara protein_coding processed_transcript MGP_AJ_T0032161.1 MGP_AJ_G0019046.1 mouse_genomes_project 11 97298626 97337198 + MGP_AJ_P0032161 Rara protein_coding protein_coding MGP_AJ_T0032162.1 MGP_AJ_G0019046.1 mouse_genomes_project 11 97298627 97309946 + Rara protein_coding processed_transcript MGP_AJ_T0032163.1 MGP_AJ_G0019046.1 mouse_genomes_project 11 97322212 97337198 + MGP_AJ_P0032163 Rara protein_coding protein_coding MGP_AJ_T0003300.1 MGP_AJ_G0003042.1 mouse_genomes_project 11 100396660 100401639 + Gm11551 antisense antisense MGP_AJ_T0003163.1 MGP_AJ_G0002934.1 mouse_genomes_project 11 51130122 51130788 - Gm12214 antisense antisense MGP_AJ_T0003179.1 MGP_AJ_G0002948.1 mouse_genomes_project 11 56545569 56549469 + Gm10435 antisense antisense MGP_AJ_T0003180.1 MGP_AJ_G0002948.1 mouse_genomes_project 11 56545569 56549469 + Gm10435 antisense antisense MGP_AJ_T0017178.1 MGP_AJ_G0015139.1 mouse_genomes_project 11 31077563 31197593 - 4930469K13Rik processed_transcript processed_transcript MGP_AJ_T0032855.1 MGP_AJ_G0019232.1 mouse_genomes_project 11 102093328 102172346 - MGP_AJ_P0032855 Gm884 protein_coding protein_coding MGP_AJ_T0033933.1 MGP_AJ_G0019457.1 mouse_genomes_project 11 118966588 118990207 - MGP_AJ_P0033933 Cep131 protein_coding protein_coding MGP_AJ_T0033934.1 MGP_AJ_G0019457.1 mouse_genomes_project 11 118966592 118967127 - Cep131 protein_coding processed_transcript MGP_AJ_T0033935.1 MGP_AJ_G0019457.1 mouse_genomes_project 11 118966797 118970216 - Cep131 protein_coding processed_transcript MGP_AJ_T0033936.1 MGP_AJ_G0019457.1 mouse_genomes_project 11 118969287 118973066 - Cep131 protein_coding processed_transcript MGP_AJ_T0033937.1 MGP_AJ_G0019457.1 mouse_genomes_project 11 118970247 118974181 - Cep131 protein_coding processed_transcript MGP_AJ_T0030740.1 MGP_AJ_G0018697.1 mouse_genomes_project 11 74161417 74162478 + MGP_AJ_P0030740 Dbil5 protein_coding protein_coding MGP_AJ_T0003233.1 MGP_AJ_G0002992.1 mouse_genomes_project 11 77486705 77489018 - AU040972 antisense antisense MGP_AJ_T0028282.1 MGP_AJ_G0018071.1 mouse_genomes_project 11 23389519 23510586 - MGP_AJ_P0028282 protein_coding protein_coding MGP_AJ_T0028283.1 MGP_AJ_G0018071.1 mouse_genomes_project 11 23389601 23512824 - MGP_AJ_P0028283 protein_coding protein_coding MGP_AJ_T0028284.1 MGP_AJ_G0018071.1 mouse_genomes_project 11 23389642 23470778 - MGP_AJ_P0028284 protein_coding unknown_likely_coding MGP_AJ_T0028285.1 MGP_AJ_G0018071.1 mouse_genomes_project 11 23454638 23512523 - protein_coding retained_intron MGP_AJ_T0028286.1 MGP_AJ_G0018071.1 mouse_genomes_project 11 23455054 23470045 - protein_coding processed_transcript MGP_AJ_T0028287.1 MGP_AJ_G0018071.1 mouse_genomes_project 11 23466077 23512827 - protein_coding retained_intron MGP_AJ_T0028288.1 MGP_AJ_G0018071.1 mouse_genomes_project 11 23468529 23512903 - MGP_AJ_P0028288 protein_coding protein_coding MGP_AJ_T0028289.1 MGP_AJ_G0018071.1 mouse_genomes_project 11 23501154 23512504 - protein_coding processed_transcript MGP_AJ_T0031347.1 MGP_AJ_G0018849.1 mouse_genomes_project 11 83523395 83998967 + MGP_AJ_P0031347 Bcas3 protein_coding protein_coding MGP_AJ_T0031348.1 MGP_AJ_G0018849.1 mouse_genomes_project 11 83523395 83998967 + MGP_AJ_P0031348 Bcas3 protein_coding protein_coding MGP_AJ_T0031349.1 MGP_AJ_G0018849.1 mouse_genomes_project 11 83523395 83678607 + MGP_AJ_P0031349 Bcas3 protein_coding protein_coding MGP_AJ_T0031350.1 MGP_AJ_G0018849.1 mouse_genomes_project 11 83523413 83541542 + MGP_AJ_P0031350 Bcas3 protein_coding protein_coding MGP_AJ_T0031351.1 MGP_AJ_G0018849.1 mouse_genomes_project 11 83523440 83998259 + MGP_AJ_P0031351 Bcas3 protein_coding protein_coding MGP_AJ_T0031352.1 MGP_AJ_G0018849.1 mouse_genomes_project 11 83523440 83998259 + MGP_AJ_P0031352 Bcas3 protein_coding protein_coding MGP_AJ_T0031353.1 MGP_AJ_G0018849.1 mouse_genomes_project 11 83630317 83998967 + MGP_AJ_P0031353 Bcas3 protein_coding protein_coding MGP_AJ_T0031354.1 MGP_AJ_G0018849.1 mouse_genomes_project 11 83634910 83664688 + MGP_AJ_P0031354 Bcas3 protein_coding protein_coding MGP_AJ_T0031355.1 MGP_AJ_G0018849.1 mouse_genomes_project 11 83660262 83663609 + Bcas3 protein_coding processed_transcript MGP_AJ_T0031356.1 MGP_AJ_G0018849.1 mouse_genomes_project 11 83677242 83998967 + MGP_AJ_P0031356 Bcas3 protein_coding protein_coding MGP_AJ_T0031357.1 MGP_AJ_G0018849.1 mouse_genomes_project 11 83677253 83998967 + MGP_AJ_P0031357 Bcas3 protein_coding protein_coding MGP_AJ_T0031358.1 MGP_AJ_G0018849.1 mouse_genomes_project 11 83750721 83772580 + Bcas3 protein_coding processed_transcript MGP_AJ_T0031359.1 MGP_AJ_G0018849.1 mouse_genomes_project 11 83810814 83998964 + Bcas3 protein_coding processed_transcript MGP_AJ_T0031360.1 MGP_AJ_G0018849.1 mouse_genomes_project 11 83974704 83998299 + MGP_AJ_P0031360 Bcas3 protein_coding protein_coding MGP_AJ_T0031361.1 MGP_AJ_G0018849.1 mouse_genomes_project 11 83994321 83998555 + Bcas3 protein_coding processed_transcript MGP_AJ_T0031362.1 MGP_AJ_G0018849.1 mouse_genomes_project 11 83994874 83998216 + Bcas3 protein_coding processed_transcript MGP_AJ_T0034166.1 MGP_AJ_G0019501.1 mouse_genomes_project 11 119874655 119907810 - MGP_AJ_P0034166 Csnk1d protein_coding protein_coding MGP_AJ_T0034167.1 MGP_AJ_G0019501.1 mouse_genomes_project 11 119874655 119907572 - MGP_AJ_P0034167 Csnk1d protein_coding protein_coding MGP_AJ_T0034168.1 MGP_AJ_G0019501.1 mouse_genomes_project 11 119876554 119878593 - Csnk1d protein_coding processed_transcript MGP_AJ_T0034169.1 MGP_AJ_G0019501.1 mouse_genomes_project 11 119876679 119884532 - Csnk1d protein_coding processed_transcript MGP_AJ_T0034170.1 MGP_AJ_G0019501.1 mouse_genomes_project 11 119880518 119880968 - Csnk1d protein_coding processed_transcript MGP_AJ_T0034171.1 MGP_AJ_G0019501.1 mouse_genomes_project 11 119885378 119907351 - MGP_AJ_P0034171 Csnk1d protein_coding protein_coding MGP_AJ_T0034172.1 MGP_AJ_G0019501.1 mouse_genomes_project 11 119885396 119907467 - MGP_AJ_P0034172 Csnk1d protein_coding nonsense_mediated_decay MGP_AJ_T0034173.1 MGP_AJ_G0019501.1 mouse_genomes_project 11 119896161 119907531 - Csnk1d protein_coding retained_intron MGP_AJ_T0033159.1 MGP_AJ_G0019299.1 mouse_genomes_project 11 108032509 108070737 + MGP_AJ_P0033159 Gna13 protein_coding protein_coding MGP_AJ_T0033160.1 MGP_AJ_G0019299.1 mouse_genomes_project 11 108032509 108050065 + MGP_AJ_P0033160 Gna13 protein_coding protein_coding MGP_AJ_T0012619.1 MGP_AJ_G0010714.1 mouse_genomes_project 11 52949345 52949515 - processed_pseudogene processed_pseudogene MGP_AJ_T0012474.1 MGP_AJ_G0010569.1 mouse_genomes_project 11 3699706 3700284 - processed_pseudogene processed_pseudogene MGP_AJ_T0100607.1 MGP_AJ_G0038573.1 mouse_genomes_project 11 70517126 70517264 - Gm24143 snoRNA snoRNA MGP_AJ_T0034072.1 MGP_AJ_G0019485.1 mouse_genomes_project 11 119535197 119543669 - MGP_AJ_P0034072 Mafg protein_coding protein_coding MGP_AJ_T0034073.1 MGP_AJ_G0019485.1 mouse_genomes_project 11 119539087 119540878 - MGP_AJ_P0034073 Mafg protein_coding protein_coding MGP_AJ_T0034074.1 MGP_AJ_G0019485.1 mouse_genomes_project 11 119539221 119540717 - MGP_AJ_P0034074 Mafg protein_coding protein_coding MGP_AJ_T0034075.1 MGP_AJ_G0019485.1 mouse_genomes_project 11 119539312 119540229 - MGP_AJ_P0034075 Mafg protein_coding protein_coding MGP_AJ_T0034076.1 MGP_AJ_G0019485.1 mouse_genomes_project 11 119541304 119543625 - Mafg protein_coding processed_transcript MGP_AJ_T0030492.1 MGP_AJ_G0018624.1 mouse_genomes_project 11 71091017 71107483 - MGP_AJ_P0030492 Ctns protein_coding protein_coding MGP_AJ_T0030493.1 MGP_AJ_G0018624.1 mouse_genomes_project 11 71091018 71107483 - MGP_AJ_P0030493 Ctns protein_coding protein_coding MGP_AJ_T0030494.1 MGP_AJ_G0018624.1 mouse_genomes_project 11 71093784 71097254 - Ctns protein_coding retained_intron MGP_AJ_T0030495.1 MGP_AJ_G0018624.1 mouse_genomes_project 11 71099748 71107462 - Ctns protein_coding retained_intron MGP_AJ_T0030496.1 MGP_AJ_G0018624.1 mouse_genomes_project 11 71100150 71107436 - Ctns protein_coding processed_transcript MGP_AJ_T0033115.1 MGP_AJ_G0019290.1 mouse_genomes_project 11 106355262 106368548 - MGP_AJ_P0033115 Cacng1 protein_coding protein_coding MGP_AJ_T0032096.1 MGP_AJ_G0019032.1 mouse_genomes_project 11 96929231 96935325 - MGP_AJ_P0032096 Ormdl3 protein_coding protein_coding MGP_AJ_T0033162.1 MGP_AJ_G0019301.1 mouse_genomes_project 11 108095318 108107716 + MGP_AJ_P0033162 Amz2 protein_coding protein_coding MGP_AJ_T0033163.1 MGP_AJ_G0019301.1 mouse_genomes_project 11 108095348 108122308 + MGP_AJ_P0033163 Amz2 protein_coding protein_coding MGP_AJ_T0033164.1 MGP_AJ_G0019301.1 mouse_genomes_project 11 108095354 108100414 + Amz2 protein_coding retained_intron MGP_AJ_T0033165.1 MGP_AJ_G0019301.1 mouse_genomes_project 11 108095596 108106331 + MGP_AJ_P0033165 Amz2 protein_coding protein_coding MGP_AJ_T0033166.1 MGP_AJ_G0019301.1 mouse_genomes_project 11 108102056 108103964 + Amz2 protein_coding processed_transcript MGP_AJ_T0033167.1 MGP_AJ_G0019301.1 mouse_genomes_project 11 108103118 108104069 + Amz2 protein_coding retained_intron MGP_AJ_T0033168.1 MGP_AJ_G0019301.1 mouse_genomes_project 11 108103331 108106819 + Amz2 protein_coding processed_transcript MGP_AJ_T0033169.1 MGP_AJ_G0019301.1 mouse_genomes_project 11 108109993 108122749 + Amz2 protein_coding processed_transcript MGP_AJ_T0003213.1 MGP_AJ_G0002974.1 mouse_genomes_project 11 65340028 65345845 - Gm12301 antisense antisense MGP_AJ_T0003145.1 MGP_AJ_G0002917.1 mouse_genomes_project 11 40407132 40462731 - Gm12147 antisense antisense MGP_AJ_T0031200.1 MGP_AJ_G0018810.1 mouse_genomes_project 11 81382900 81394951 - MGP_AJ_P0031200 Slfn14 protein_coding protein_coding MGP_AJ_T0030987.1 MGP_AJ_G0018748.1 mouse_genomes_project 11 76470178 76471673 + Vtn protein_coding retained_intron MGP_AJ_T0030988.1 MGP_AJ_G0018748.1 mouse_genomes_project 11 76470207 76473412 + MGP_AJ_P0030988 Vtn protein_coding protein_coding MGP_AJ_T0030989.1 MGP_AJ_G0018748.1 mouse_genomes_project 11 76470259 76471332 + Vtn protein_coding retained_intron MGP_AJ_T0030990.1 MGP_AJ_G0018748.1 mouse_genomes_project 11 76471693 76473310 + Vtn protein_coding retained_intron MGP_AJ_T0006323.1 MGP_AJ_G0005273.1 mouse_genomes_project 11 93966591 93968541 - Gm9796 lincRNA lincRNA MGP_AJ_T0003142.1 MGP_AJ_G0002914.1 mouse_genomes_project 11 33410165 33412101 + Gm12127 antisense antisense MGP_AJ_T0033624.1 MGP_AJ_G0019396.1 mouse_genomes_project 11 115283618 115297497 - MGP_AJ_P0033624 Qrich2 protein_coding protein_coding MGP_AJ_T0033625.1 MGP_AJ_G0019396.1 mouse_genomes_project 11 115283620 115298387 - MGP_AJ_P0033625 Qrich2 protein_coding protein_coding MGP_AJ_T0033626.1 MGP_AJ_G0019396.1 mouse_genomes_project 11 115286795 115290088 - Qrich2 protein_coding retained_intron MGP_AJ_T0029541.1 MGP_AJ_G0018414.1 mouse_genomes_project 11 59383693 59386461 + Fam83g protein_coding processed_transcript MGP_AJ_T0029542.1 MGP_AJ_G0018414.1 mouse_genomes_project 11 59383754 59409441 + MGP_AJ_P0029542 Fam83g protein_coding unknown_likely_coding MGP_AJ_T0029061.1 MGP_AJ_G0018279.1 mouse_genomes_project 11 51513996 51528034 - MGP_AJ_P0029061 Pdlim4 protein_coding protein_coding MGP_AJ_T0029062.1 MGP_AJ_G0018279.1 mouse_genomes_project 11 51514989 51523866 - MGP_AJ_P0029062 Pdlim4 protein_coding protein_coding MGP_AJ_T0029063.1 MGP_AJ_G0018279.1 mouse_genomes_project 11 51518020 51528061 - Pdlim4 protein_coding retained_intron MGP_AJ_T0029064.1 MGP_AJ_G0018279.1 mouse_genomes_project 11 51522792 51523638 - Pdlim4 protein_coding processed_transcript MGP_AJ_T0028201.1 MGP_AJ_G0018056.1 mouse_genomes_project 11 19915620 19928882 + MGP_AJ_P0028201 Cct4 protein_coding protein_coding MGP_AJ_T0028202.1 MGP_AJ_G0018056.1 mouse_genomes_project 11 19915727 19919491 + MGP_AJ_P0028202 Cct4 protein_coding nonsense_mediated_decay MGP_AJ_T0028203.1 MGP_AJ_G0018056.1 mouse_genomes_project 11 19915740 19924978 + Cct4 protein_coding retained_intron MGP_AJ_T0028204.1 MGP_AJ_G0018056.1 mouse_genomes_project 11 19915751 19922198 + MGP_AJ_P0028204 Cct4 protein_coding nonsense_mediated_decay MGP_AJ_T0028205.1 MGP_AJ_G0018056.1 mouse_genomes_project 11 19915751 19928253 + MGP_AJ_P0028205 Cct4 protein_coding protein_coding MGP_AJ_T0028206.1 MGP_AJ_G0018056.1 mouse_genomes_project 11 19915753 19922251 + MGP_AJ_P0028206 Cct4 protein_coding nonsense_mediated_decay MGP_AJ_T0028207.1 MGP_AJ_G0018056.1 mouse_genomes_project 11 19920725 19922203 + Cct4 protein_coding retained_intron MGP_AJ_T0028208.1 MGP_AJ_G0018056.1 mouse_genomes_project 11 19926038 19926721 + Cct4 protein_coding processed_transcript MGP_AJ_T0028209.1 MGP_AJ_G0018056.1 mouse_genomes_project 11 19927035 19927957 + Cct4 protein_coding retained_intron MGP_AJ_T0033116.1 MGP_AJ_G0019291.1 mouse_genomes_project 11 106386078 106448619 - MGP_AJ_P0033116 Cacng4 protein_coding protein_coding MGP_AJ_T0033117.1 MGP_AJ_G0019291.1 mouse_genomes_project 11 106388918 106395720 - Cacng4 protein_coding processed_transcript MGP_AJ_T0003309.1 MGP_AJ_G0003051.1 mouse_genomes_project 11 101916049 101917488 + Arhgap27os1 antisense antisense MGP_AJ_T0031135.1 MGP_AJ_G0018787.1 mouse_genomes_project 11 80071182 80081516 - MGP_AJ_P0031135 Gm17268 protein_coding protein_coding MGP_AJ_T0099370.1 MGP_AJ_G0037336.1 mouse_genomes_project 11 97305359 97305466 + Gm22061 snRNA snRNA MGP_AJ_T0029232.1 MGP_AJ_G0018330.1 mouse_genomes_project 11 56045735 56049373 - MGP_AJ_P0029232 Olfr328 protein_coding protein_coding MGP_AJ_T0012781.1 MGP_AJ_G0010876.1 mouse_genomes_project 11 114403852 114404389 - processed_pseudogene processed_pseudogene MGP_AJ_T0017215.1 MGP_AJ_G0015160.1 mouse_genomes_project 11 73507527 73512632 - 4931413K12Rik processed_transcript processed_transcript MGP_AJ_T0009726.1 MGP_AJ_G0007848.1 mouse_genomes_project 11 83931564 83931651 - Mir5110 miRNA miRNA MGP_AJ_T0003279.1 MGP_AJ_G0003026.1 mouse_genomes_project 11 95472762 95473448 + Gm11583 antisense antisense MGP_AJ_T0003201.1 MGP_AJ_G0002966.1 mouse_genomes_project 11 60703836 60704491 - Cdrt4os2 antisense antisense MGP_AJ_T0030152.1 MGP_AJ_G0018550.1 mouse_genomes_project 11 67958757 67963998 + protein_coding processed_transcript MGP_AJ_T0032507.1 MGP_AJ_G0019169.1 mouse_genomes_project 11 99901399 99911981 + MGP_AJ_P0032507 Rundc1 protein_coding protein_coding MGP_AJ_T0029258.1 MGP_AJ_G0018348.1 mouse_genomes_project 11 56393926 56408673 + MGP_AJ_P0029258 2810021J22Rik protein_coding protein_coding MGP_AJ_T0029259.1 MGP_AJ_G0018348.1 mouse_genomes_project 11 56393977 56403384 + MGP_AJ_P0029259 2810021J22Rik protein_coding protein_coding MGP_AJ_T0031841.1 MGP_AJ_G0018974.1 mouse_genomes_project 11 94602852 94606195 + MGP_AJ_P0031841 Hoxb4 protein_coding protein_coding MGP_AJ_T0031024.1 MGP_AJ_G0018760.1 mouse_genomes_project 11 77004502 77137986 - MGP_AJ_P0031024 Ksr1 protein_coding unknown_likely_coding MGP_AJ_T0031025.1 MGP_AJ_G0018760.1 mouse_genomes_project 11 77004511 77138144 - MGP_AJ_P0031025 Ksr1 protein_coding protein_coding MGP_AJ_T0031026.1 MGP_AJ_G0018760.1 mouse_genomes_project 11 77017752 77138144 - MGP_AJ_P0031026 Ksr1 protein_coding protein_coding MGP_AJ_T0031027.1 MGP_AJ_G0018760.1 mouse_genomes_project 11 77035580 77050536 - MGP_AJ_P0031027 Ksr1 protein_coding protein_coding MGP_AJ_T0031028.1 MGP_AJ_G0018760.1 mouse_genomes_project 11 77035843 77048288 - MGP_AJ_P0031028 Ksr1 protein_coding protein_coding MGP_AJ_T0032831.1 MGP_AJ_G0019227.1 mouse_genomes_project 11 101747710 101756920 - MGP_AJ_P0032831 1700023F06Rik protein_coding protein_coding MGP_AJ_T0032832.1 MGP_AJ_G0019227.1 mouse_genomes_project 11 101747727 101751594 - MGP_AJ_P0032832 1700023F06Rik protein_coding protein_coding MGP_AJ_T0032833.1 MGP_AJ_G0019227.1 mouse_genomes_project 11 101748182 101756894 - MGP_AJ_P0032833 1700023F06Rik protein_coding nonsense_mediated_decay MGP_AJ_T0032834.1 MGP_AJ_G0019227.1 mouse_genomes_project 11 101749091 101756895 - MGP_AJ_P0032834 1700023F06Rik protein_coding protein_coding MGP_AJ_T0032835.1 MGP_AJ_G0019227.1 mouse_genomes_project 11 101749464 101756920 - 1700023F06Rik protein_coding retained_intron MGP_AJ_T0032963.1 MGP_AJ_G0019256.1 mouse_genomes_project 11 104589332 104610930 + MGP_AJ_P0032963 Ace protein_coding protein_coding MGP_AJ_T0032964.1 MGP_AJ_G0019256.1 mouse_genomes_project 11 104592708 104610226 + MGP_AJ_P0032964 Ace protein_coding protein_coding MGP_AJ_T0032965.1 MGP_AJ_G0019256.1 mouse_genomes_project 11 104596575 104610219 + MGP_AJ_P0032965 Ace protein_coding protein_coding MGP_AJ_T0032966.1 MGP_AJ_G0019256.1 mouse_genomes_project 11 104597972 104606056 + Ace protein_coding processed_transcript MGP_AJ_T0028608.1 MGP_AJ_G0018152.1 mouse_genomes_project 11 41572644 41586560 + MGP_AJ_P0028608 Il12b protein_coding protein_coding MGP_AJ_T0028609.1 MGP_AJ_G0018152.1 mouse_genomes_project 11 41572644 41586584 + MGP_AJ_P0028609 Il12b protein_coding protein_coding MGP_AJ_T0006290.1 MGP_AJ_G0005251.1 mouse_genomes_project 11 78036410 78041664 - Gm26563 lincRNA lincRNA MGP_AJ_T0006291.1 MGP_AJ_G0005251.1 mouse_genomes_project 11 78037536 78049198 - Gm26563 lincRNA lincRNA MGP_AJ_T0003370.1 MGP_AJ_G0003101.1 mouse_genomes_project 11 120735917 120736575 - Gm15643 antisense antisense MGP_AJ_T0028301.1 MGP_AJ_G0018075.1 mouse_genomes_project 11 26135826 26168473 + Pnpt1 protein_coding processed_transcript MGP_AJ_T0028302.1 MGP_AJ_G0018075.1 mouse_genomes_project 11 26135830 26140602 + Pnpt1 protein_coding processed_transcript MGP_AJ_T0028303.1 MGP_AJ_G0018075.1 mouse_genomes_project 11 26135830 26168621 + MGP_AJ_P0028303 Pnpt1 protein_coding protein_coding MGP_AJ_T0028304.1 MGP_AJ_G0018075.1 mouse_genomes_project 11 26135942 26168276 + MGP_AJ_P0028304 Pnpt1 protein_coding unknown_likely_coding MGP_AJ_T0028305.1 MGP_AJ_G0018075.1 mouse_genomes_project 11 26143347 26150869 + Pnpt1 protein_coding processed_transcript MGP_AJ_T0003295.1 MGP_AJ_G0003037.1 mouse_genomes_project 11 99138352 99148363 + Dhx58os antisense antisense MGP_AJ_T0032200.1 MGP_AJ_G0019059.1 mouse_genomes_project 11 97753128 97757241 - MGP_AJ_P0032200 Krt10 protein_coding protein_coding MGP_AJ_T0003224.1 MGP_AJ_G0002983.1 mouse_genomes_project 11 68453545 68455545 - Gm12316 antisense antisense MGP_AJ_T0030363.1 MGP_AJ_G0018590.1 mouse_genomes_project 11 68862900 68876059 - MGP_AJ_P0030363 Derl2 protein_coding protein_coding MGP_AJ_T0030364.1 MGP_AJ_G0018590.1 mouse_genomes_project 11 68863986 68876065 - MGP_AJ_P0030364 Derl2 protein_coding protein_coding MGP_AJ_T0030365.1 MGP_AJ_G0018590.1 mouse_genomes_project 11 68867173 68876092 - MGP_AJ_P0030365 Derl2 protein_coding nonsense_mediated_decay MGP_AJ_T0030366.1 MGP_AJ_G0018590.1 mouse_genomes_project 11 68868944 68876066 - Derl2 protein_coding retained_intron MGP_AJ_T0030367.1 MGP_AJ_G0018590.1 mouse_genomes_project 11 68869944 68876098 - MGP_AJ_P0030367 Derl2 protein_coding nonsense_mediated_decay MGP_AJ_T0030368.1 MGP_AJ_G0018590.1 mouse_genomes_project 11 68871388 68876035 - MGP_AJ_P0030368 Derl2 protein_coding nonsense_mediated_decay MGP_AJ_T0006237.1 MGP_AJ_G0005209.1 mouse_genomes_project 11 48398117 48405037 + 9230009I02Rik lincRNA lincRNA MGP_AJ_T0031215.1 MGP_AJ_G0018813.1 mouse_genomes_project 11 81519268 81528937 + MGP_AJ_P0031215 Rasl10b protein_coding protein_coding MGP_AJ_T0031216.1 MGP_AJ_G0018813.1 mouse_genomes_project 11 81519806 81531142 + MGP_AJ_P0031216 Rasl10b protein_coding protein_coding MGP_AJ_T0031217.1 MGP_AJ_G0018813.1 mouse_genomes_project 11 81519806 81531140 + MGP_AJ_P0031217 Rasl10b protein_coding protein_coding MGP_AJ_T0031218.1 MGP_AJ_G0018813.1 mouse_genomes_project 11 81520190 81531141 + MGP_AJ_P0031218 Rasl10b protein_coding protein_coding MGP_AJ_T0100582.1 MGP_AJ_G0038548.1 mouse_genomes_project 11 26841230 26841370 + Gm22588 snoRNA snoRNA MGP_AJ_T0028875.1 MGP_AJ_G0018227.1 mouse_genomes_project 11 48235144 48238203 - MGP_AJ_P0028875 Prop1 protein_coding protein_coding MGP_AJ_T0028876.1 MGP_AJ_G0018227.1 mouse_genomes_project 11 48235530 48236793 - Prop1 protein_coding retained_intron MGP_AJ_T0028877.1 MGP_AJ_G0018227.1 mouse_genomes_project 11 48236552 48238189 - MGP_AJ_P0028877 Prop1 protein_coding protein_coding MGP_AJ_T0012496.1 MGP_AJ_G0010591.1 mouse_genomes_project 11 13919877 13924106 + processed_pseudogene processed_pseudogene MGP_AJ_T0032232.1 MGP_AJ_G0019089.1 mouse_genomes_project 11 98173593 98174483 - MGP_AJ_P0032232 protein_coding protein_coding MGP_AJ_T0031131.1 MGP_AJ_G0018785.1 mouse_genomes_project 11 78919060 80007593 - MGP_AJ_P0031131 Asic2 protein_coding protein_coding MGP_AJ_T0031132.1 MGP_AJ_G0018785.1 mouse_genomes_project 11 78919060 79193390 - MGP_AJ_P0031132 Asic2 protein_coding protein_coding MGP_AJ_T0028901.1 MGP_AJ_G0018236.1 mouse_genomes_project 11 48620327 48918219 + MGP_AJ_P0028901 Col23a1 protein_coding protein_coding MGP_AJ_T0028902.1 MGP_AJ_G0018236.1 mouse_genomes_project 11 48620534 48911975 + MGP_AJ_P0028902 Col23a1 protein_coding unknown_likely_coding MGP_AJ_T0028903.1 MGP_AJ_G0018236.1 mouse_genomes_project 11 48841621 48911975 + MGP_AJ_P0028903 Col23a1 protein_coding unknown_likely_coding MGP_AJ_T0028904.1 MGP_AJ_G0018236.1 mouse_genomes_project 11 48908952 48914600 + MGP_AJ_P0028904 Col23a1 protein_coding protein_coding MGP_AJ_T0100638.1 MGP_AJ_G0038604.1 mouse_genomes_project 11 119953790 119953915 + Gm22152 snoRNA snoRNA MGP_AJ_T0012644.1 MGP_AJ_G0010739.1 mouse_genomes_project 11 60028812 60029119 - processed_pseudogene processed_pseudogene MGP_AJ_T0003141.1 MGP_AJ_G0002913.1 mouse_genomes_project 11 33214169 33217346 + Gm12126 antisense antisense MGP_AJ_T0012590.1 MGP_AJ_G0010685.1 mouse_genomes_project 11 45861518 45862484 - processed_pseudogene processed_pseudogene MGP_AJ_T0030530.1 MGP_AJ_G0018640.1 mouse_genomes_project 11 71710063 71849252 + MGP_AJ_P0030530 Olfr390 protein_coding protein_coding MGP_AJ_T0030531.1 MGP_AJ_G0018640.1 mouse_genomes_project 11 71710081 71848783 + MGP_AJ_P0030531 Olfr390 protein_coding protein_coding MGP_AJ_T0030538.1 MGP_AJ_G0018640.1 mouse_genomes_project 11 71848313 71849252 + MGP_AJ_P0030538 Olfr390 protein_coding protein_coding MGP_AJ_T0027722.1 MGP_AJ_G0017942.1 mouse_genomes_project 11 896757 912539 + MGP_AJ_P0027722 Pes1 protein_coding protein_coding MGP_AJ_T0027723.1 MGP_AJ_G0017942.1 mouse_genomes_project 11 896791 903522 + Pes1 protein_coding processed_transcript MGP_AJ_T0027724.1 MGP_AJ_G0017942.1 mouse_genomes_project 11 896831 909571 + Pes1 protein_coding processed_transcript MGP_AJ_T0029196.1 MGP_AJ_G0018314.1 mouse_genomes_project 11 55658098 55666002 + MGP_AJ_P0029196 Mrpl22 protein_coding protein_coding MGP_AJ_T0029197.1 MGP_AJ_G0018314.1 mouse_genomes_project 11 55658113 55662634 + Mrpl22 protein_coding processed_transcript MGP_AJ_T0029198.1 MGP_AJ_G0018314.1 mouse_genomes_project 11 55658126 55663712 + Mrpl22 protein_coding processed_transcript MGP_AJ_T0003202.1 MGP_AJ_G0002967.1 mouse_genomes_project 11 60737989 60751652 - Cdrt4os1 antisense antisense MGP_AJ_T0003203.1 MGP_AJ_G0002967.1 mouse_genomes_project 11 60746636 60751658 - Cdrt4os1 antisense antisense MGP_AJ_T0029998.1 MGP_AJ_G0018516.1 mouse_genomes_project 11 67499525 67513016 - MGP_AJ_P0029998 Tnfsfm13 protein_coding protein_coding MGP_AJ_T0030001.1 MGP_AJ_G0018516.1 mouse_genomes_project 11 67499996 67512728 - MGP_AJ_P0030001 Tnfsfm13 protein_coding protein_coding MGP_AJ_T0030002.1 MGP_AJ_G0018516.1 mouse_genomes_project 11 67500179 67512727 - MGP_AJ_P0030002 Tnfsfm13 protein_coding protein_coding MGP_AJ_T0006218.1 MGP_AJ_G0005191.1 mouse_genomes_project 11 31244285 31245880 + Gm12121 lincRNA lincRNA MGP_AJ_T0031528.1 MGP_AJ_G0018890.1 mouse_genomes_project 11 86410964 86418851 + MGP_AJ_P0031528 Mrps23 protein_coding protein_coding MGP_AJ_T0031529.1 MGP_AJ_G0018890.1 mouse_genomes_project 11 86410987 86418851 + MGP_AJ_P0031529 Mrps23 protein_coding protein_coding MGP_AJ_T0031530.1 MGP_AJ_G0018890.1 mouse_genomes_project 11 86411000 86418024 + MGP_AJ_P0031530 Mrps23 protein_coding protein_coding MGP_AJ_T0031531.1 MGP_AJ_G0018890.1 mouse_genomes_project 11 86411000 86417563 + MGP_AJ_P0031531 Mrps23 protein_coding protein_coding MGP_AJ_T0031532.1 MGP_AJ_G0018890.1 mouse_genomes_project 11 86411020 86418325 + MGP_AJ_P0031532 Mrps23 protein_coding protein_coding MGP_AJ_T0006215.1 MGP_AJ_G0005188.1 mouse_genomes_project 11 29976767 29999874 - Gm12111 lincRNA lincRNA MGP_AJ_T0012586.1 MGP_AJ_G0010681.1 mouse_genomes_project 11 44041870 44042215 + processed_pseudogene processed_pseudogene MGP_AJ_T0032557.1 MGP_AJ_G0019179.1 mouse_genomes_project 11 100240525 100243293 + Dhx8 protein_coding retained_intron MGP_AJ_T0032558.1 MGP_AJ_G0019179.1 mouse_genomes_project 11 100240556 100275962 + MGP_AJ_P0032558 Dhx8 protein_coding protein_coding MGP_AJ_T0032559.1 MGP_AJ_G0019179.1 mouse_genomes_project 11 100240635 100242046 + Dhx8 protein_coding retained_intron MGP_AJ_T0032560.1 MGP_AJ_G0019179.1 mouse_genomes_project 11 100240647 100275411 + MGP_AJ_P0032560 Dhx8 protein_coding protein_coding MGP_AJ_T0032561.1 MGP_AJ_G0019179.1 mouse_genomes_project 11 100259710 100261106 + Dhx8 protein_coding retained_intron MGP_AJ_T0003191.1 MGP_AJ_G0002957.1 mouse_genomes_project 11 60214689 60233489 + Gm12278 antisense antisense MGP_AJ_T0100567.1 MGP_AJ_G0038533.1 mouse_genomes_project 11 3598813 3598946 - Gm24313 snoRNA snoRNA MGP_AJ_T0003158.1 MGP_AJ_G0002929.1 mouse_genomes_project 11 49379498 49380120 - Gm12205 antisense antisense MGP_AJ_T0006294.1 MGP_AJ_G0005254.1 mouse_genomes_project 11 81333091 81335534 + AI662270 lincRNA lincRNA MGP_AJ_T0006295.1 MGP_AJ_G0005254.1 mouse_genomes_project 11 81333091 81336269 + AI662270 lincRNA lincRNA MGP_AJ_T0006296.1 MGP_AJ_G0005254.1 mouse_genomes_project 11 81333782 81334258 + AI662270 lincRNA lincRNA MGP_AJ_T0006268.1 MGP_AJ_G0005235.1 mouse_genomes_project 11 68888755 68890328 - 6330403K07Rik lincRNA lincRNA MGP_AJ_T0006230.1 MGP_AJ_G0005203.1 mouse_genomes_project 11 42343307 42396949 + Gm12160 lincRNA lincRNA MGP_AJ_T0029605.1 MGP_AJ_G0018424.1 mouse_genomes_project 11 60257751 60266884 - MGP_AJ_P0029605 Cenpv protein_coding unknown_likely_coding MGP_AJ_T0029606.1 MGP_AJ_G0018424.1 mouse_genomes_project 11 60257755 60272057 - MGP_AJ_P0029606 Cenpv protein_coding protein_coding MGP_AJ_T0029607.1 MGP_AJ_G0018424.1 mouse_genomes_project 11 60257758 60260706 - Cenpv protein_coding retained_intron MGP_AJ_T0029608.1 MGP_AJ_G0018424.1 mouse_genomes_project 11 60257952 60271281 - Cenpv protein_coding processed_transcript MGP_AJ_T0029609.1 MGP_AJ_G0018424.1 mouse_genomes_project 11 60260302 60271425 - Cenpv protein_coding processed_transcript MGP_AJ_T0029610.1 MGP_AJ_G0018424.1 mouse_genomes_project 11 60266696 60271799 - MGP_AJ_P0029610 Cenpv protein_coding nonsense_mediated_decay MGP_AJ_T0029611.1 MGP_AJ_G0018424.1 mouse_genomes_project 11 60266927 60271799 - Cenpv protein_coding processed_transcript MGP_AJ_T0099329.1 MGP_AJ_G0037295.1 mouse_genomes_project 11 52292484 52292654 + Gm23021 snRNA snRNA MGP_AJ_T0030269.1 MGP_AJ_G0018576.1 mouse_genomes_project 11 68501820 68502692 + Rnf167 protein_coding processed_transcript MGP_AJ_T0030270.1 MGP_AJ_G0018576.1 mouse_genomes_project 11 68501872 68506001 + MGP_AJ_P0030270 Rnf167 protein_coding protein_coding MGP_AJ_T0030271.1 MGP_AJ_G0018576.1 mouse_genomes_project 11 68501872 68505992 + MGP_AJ_P0030271 Rnf167 protein_coding nonsense_mediated_decay MGP_AJ_T0030272.1 MGP_AJ_G0018576.1 mouse_genomes_project 11 68502140 68504351 + MGP_AJ_P0030272 Rnf167 protein_coding nonsense_mediated_decay MGP_AJ_T0030273.1 MGP_AJ_G0018576.1 mouse_genomes_project 11 68502146 68505990 + Rnf167 protein_coding retained_intron MGP_AJ_T0030274.1 MGP_AJ_G0018576.1 mouse_genomes_project 11 68502154 68502840 + Rnf167 protein_coding retained_intron MGP_AJ_T0030275.1 MGP_AJ_G0018576.1 mouse_genomes_project 11 68502528 68504920 + Rnf167 protein_coding retained_intron MGP_AJ_T0030276.1 MGP_AJ_G0018576.1 mouse_genomes_project 11 68502660 68505671 + Rnf167 protein_coding retained_intron MGP_AJ_T0030277.1 MGP_AJ_G0018576.1 mouse_genomes_project 11 68503707 68504118 + Rnf167 protein_coding retained_intron MGP_AJ_T0030278.1 MGP_AJ_G0018576.1 mouse_genomes_project 11 68504521 68504920 + Rnf167 protein_coding retained_intron MGP_AJ_T0012720.1 MGP_AJ_G0010815.1 mouse_genomes_project 11 90050180 90051129 - processed_pseudogene processed_pseudogene MGP_AJ_T0006270.1 MGP_AJ_G0005237.1 mouse_genomes_project 11 69413794 69470288 + 9230020A06Rik lincRNA lincRNA MGP_AJ_T0006271.1 MGP_AJ_G0005237.1 mouse_genomes_project 11 69444905 69469581 + 9230020A06Rik lincRNA lincRNA MGP_AJ_T0028200.1 MGP_AJ_G0018055.1 mouse_genomes_project 11 19898314 19901596 + MGP_AJ_P0028200 Zrsr1 protein_coding protein_coding MGP_AJ_T0006258.1 MGP_AJ_G0005228.1 mouse_genomes_project 11 62594141 62597295 - Gm12292 lincRNA lincRNA MGP_AJ_T0029614.1 MGP_AJ_G0018426.1 mouse_genomes_project 11 60306985 60333030 + Trpv2 protein_coding processed_transcript MGP_AJ_T0029615.1 MGP_AJ_G0018426.1 mouse_genomes_project 11 60307037 60333333 + MGP_AJ_P0029615 Trpv2 protein_coding protein_coding MGP_AJ_T0029616.1 MGP_AJ_G0018426.1 mouse_genomes_project 11 60308046 60313776 + Trpv2 protein_coding processed_transcript MGP_AJ_T0029617.1 MGP_AJ_G0018426.1 mouse_genomes_project 11 60308624 60333030 + MGP_AJ_P0029617 Trpv2 protein_coding protein_coding MGP_AJ_T0029618.1 MGP_AJ_G0018426.1 mouse_genomes_project 11 60313738 60333030 + Trpv2 protein_coding processed_transcript MGP_AJ_T0102256.1 MGP_AJ_G0039999.1 mouse_genomes_project 11 98040580 98040790 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0017247.1 MGP_AJ_G0015176.1 mouse_genomes_project 11 95916568 95945705 + 2410003L11Rik processed_transcript processed_transcript MGP_AJ_T0017248.1 MGP_AJ_G0015176.1 mouse_genomes_project 11 95938254 95942235 + 2410003L11Rik processed_transcript processed_transcript MGP_AJ_T0012618.1 MGP_AJ_G0010713.1 mouse_genomes_project 11 52597902 52598145 + processed_pseudogene processed_pseudogene MGP_AJ_T0032894.1 MGP_AJ_G0019243.1 mouse_genomes_project 11 102907000 103020068 - MGP_AJ_P0032894 Kansl1 protein_coding protein_coding MGP_AJ_T0032895.1 MGP_AJ_G0019243.1 mouse_genomes_project 11 102907272 103020068 - MGP_AJ_P0032895 Kansl1 protein_coding protein_coding MGP_AJ_T0032896.1 MGP_AJ_G0019243.1 mouse_genomes_project 11 102907272 103048143 - MGP_AJ_P0032896 Kansl1 protein_coding protein_coding MGP_AJ_T0032897.1 MGP_AJ_G0019243.1 mouse_genomes_project 11 102907316 103019475 - MGP_AJ_P0032897 Kansl1 protein_coding protein_coding MGP_AJ_T0032898.1 MGP_AJ_G0019243.1 mouse_genomes_project 11 102908692 102915910 - Kansl1 protein_coding processed_transcript MGP_AJ_T0032899.1 MGP_AJ_G0019243.1 mouse_genomes_project 11 103002723 103047273 - MGP_AJ_P0032899 Kansl1 protein_coding protein_coding MGP_AJ_T0029283.1 MGP_AJ_G0018358.1 mouse_genomes_project 11 56724402 56736299 - MGP_AJ_P0029283 Gjc2 protein_coding protein_coding MGP_AJ_T0029284.1 MGP_AJ_G0018358.1 mouse_genomes_project 11 56724402 56736686 - MGP_AJ_P0029284 Gjc2 protein_coding protein_coding MGP_AJ_T0102235.1 MGP_AJ_G0039978.1 mouse_genomes_project 11 56503243 56503654 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0028306.1 MGP_AJ_G0018076.1 mouse_genomes_project 11 26177027 26226095 + MGP_AJ_P0028306 Smek2 protein_coding protein_coding MGP_AJ_T0028307.1 MGP_AJ_G0018076.1 mouse_genomes_project 11 26177027 26215061 + MGP_AJ_P0028307 Smek2 protein_coding protein_coding MGP_AJ_T0028308.1 MGP_AJ_G0018076.1 mouse_genomes_project 11 26177881 26193902 + MGP_AJ_P0028308 Smek2 protein_coding protein_coding MGP_AJ_T0028309.1 MGP_AJ_G0018076.1 mouse_genomes_project 11 26202684 26206642 + Smek2 protein_coding processed_transcript MGP_AJ_T0028310.1 MGP_AJ_G0018076.1 mouse_genomes_project 11 26202695 26214882 + MGP_AJ_P0028310 Smek2 protein_coding protein_coding MGP_AJ_T0028311.1 MGP_AJ_G0018076.1 mouse_genomes_project 11 26211058 26223849 + Smek2 protein_coding processed_transcript MGP_AJ_T0028312.1 MGP_AJ_G0018076.1 mouse_genomes_project 11 26219038 26226095 + MGP_AJ_P0028312 Smek2 protein_coding nonsense_mediated_decay MGP_AJ_T0098534.1 MGP_AJ_G0036518.1 mouse_genomes_project 11 19988782 19988882 - Gm23740 rRNA rRNA MGP_AJ_T0100568.1 MGP_AJ_G0038534.1 mouse_genomes_project 11 3599324 3599460 - Snora5c snoRNA snoRNA MGP_AJ_T0012621.1 MGP_AJ_G0010716.1 mouse_genomes_project 11 53740095 53740324 - processed_pseudogene processed_pseudogene MGP_AJ_T0031793.1 MGP_AJ_G0018956.1 mouse_genomes_project 11 93994907 93998034 + MGP_AJ_P0031793 B130006D01Rik protein_coding protein_coding MGP_AJ_T0099373.1 MGP_AJ_G0037339.1 mouse_genomes_project 11 100089682 100089873 + Gm26316 snRNA snRNA MGP_AJ_T0030471.1 MGP_AJ_G0018616.1 mouse_genomes_project 11 70900564 70916653 + MGP_AJ_P0030471 P2rx1 protein_coding protein_coding MGP_AJ_T0030472.1 MGP_AJ_G0018616.1 mouse_genomes_project 11 70900776 70915579 + MGP_AJ_P0030472 P2rx1 protein_coding protein_coding MGP_AJ_T0030473.1 MGP_AJ_G0018616.1 mouse_genomes_project 11 70911243 70916650 + P2rx1 protein_coding retained_intron MGP_AJ_T0003111.1 MGP_AJ_G0002891.1 mouse_genomes_project 11 1569227 1576708 - Gm11961 antisense antisense MGP_AJ_T0003112.1 MGP_AJ_G0002891.1 mouse_genomes_project 11 1574317 1578951 - Gm11961 antisense antisense MGP_AJ_T0033877.1 MGP_AJ_G0019448.1 mouse_genomes_project 11 118243407 118255485 - MGP_AJ_P0033877 Sgsh protein_coding nonsense_mediated_decay MGP_AJ_T0033878.1 MGP_AJ_G0019448.1 mouse_genomes_project 11 118246224 118255513 - Sgsh protein_coding processed_transcript MGP_AJ_T0033879.1 MGP_AJ_G0019448.1 mouse_genomes_project 11 118246260 118255491 - MGP_AJ_P0033879 Sgsh protein_coding protein_coding MGP_AJ_T0033880.1 MGP_AJ_G0019448.1 mouse_genomes_project 11 118246400 118247844 - Sgsh protein_coding processed_transcript MGP_AJ_T0033881.1 MGP_AJ_G0019448.1 mouse_genomes_project 11 118246781 118252682 - Sgsh protein_coding processed_transcript MGP_AJ_T0006326.1 MGP_AJ_G0005276.1 mouse_genomes_project 11 94535839 94549126 + Gm53 lincRNA lincRNA MGP_AJ_T0006327.1 MGP_AJ_G0005276.1 mouse_genomes_project 11 94536377 94549340 + Gm53 lincRNA lincRNA MGP_AJ_T0006328.1 MGP_AJ_G0005276.1 mouse_genomes_project 11 94537267 94546337 + Gm53 lincRNA lincRNA MGP_AJ_T0006329.1 MGP_AJ_G0005276.1 mouse_genomes_project 11 94546253 94549511 + Gm53 lincRNA lincRNA MGP_AJ_T0030230.1 MGP_AJ_G0018569.1 mouse_genomes_project 11 68366125 68367182 + Psmb6 protein_coding retained_intron MGP_AJ_T0030231.1 MGP_AJ_G0018569.1 mouse_genomes_project 11 68366144 68368407 + MGP_AJ_P0030231 Psmb6 protein_coding protein_coding MGP_AJ_T0030232.1 MGP_AJ_G0018569.1 mouse_genomes_project 11 68366867 68367951 + Psmb6 protein_coding retained_intron MGP_AJ_T0030233.1 MGP_AJ_G0018569.1 mouse_genomes_project 11 68367829 68368616 + Psmb6 protein_coding retained_intron MGP_AJ_T0034115.1 MGP_AJ_G0019491.1 mouse_genomes_project 11 119624236 119631441 + MGP_AJ_P0034115 Lrrc45 protein_coding protein_coding MGP_AJ_T0034116.1 MGP_AJ_G0019491.1 mouse_genomes_project 11 119624262 119631436 + MGP_AJ_P0034116 Lrrc45 protein_coding nonsense_mediated_decay MGP_AJ_T0034117.1 MGP_AJ_G0019491.1 mouse_genomes_project 11 119624289 119625866 + MGP_AJ_P0034117 Lrrc45 protein_coding protein_coding MGP_AJ_T0034118.1 MGP_AJ_G0019491.1 mouse_genomes_project 11 119627826 119630284 + Lrrc45 protein_coding retained_intron MGP_AJ_T0034119.1 MGP_AJ_G0019491.1 mouse_genomes_project 11 119630042 119631225 + Lrrc45 protein_coding retained_intron MGP_AJ_T0102238.1 MGP_AJ_G0039981.1 mouse_genomes_project 11 71464058 71464993 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0030304.1 MGP_AJ_G0018581.1 mouse_genomes_project 11 68542909 68557174 - MGP_AJ_P0030304 Inca1 protein_coding protein_coding MGP_AJ_T0030305.1 MGP_AJ_G0018581.1 mouse_genomes_project 11 68542909 68557174 - MGP_AJ_P0030305 Inca1 protein_coding protein_coding MGP_AJ_T0030306.1 MGP_AJ_G0018581.1 mouse_genomes_project 11 68542909 68557174 - MGP_AJ_P0030306 Inca1 protein_coding protein_coding MGP_AJ_T0030307.1 MGP_AJ_G0018581.1 mouse_genomes_project 11 68542909 68557174 - MGP_AJ_P0030307 Inca1 protein_coding protein_coding MGP_AJ_T0030308.1 MGP_AJ_G0018581.1 mouse_genomes_project 11 68542917 68557128 - MGP_AJ_P0030308 Inca1 protein_coding protein_coding MGP_AJ_T0030355.1 MGP_AJ_G0018589.1 mouse_genomes_project 11 68840114 68860968 - MGP_AJ_P0030355 Dhx33 protein_coding protein_coding MGP_AJ_T0030356.1 MGP_AJ_G0018589.1 mouse_genomes_project 11 68842533 68850003 - MGP_AJ_P0030356 Dhx33 protein_coding nonsense_mediated_decay MGP_AJ_T0030357.1 MGP_AJ_G0018589.1 mouse_genomes_project 11 68842774 68860951 - MGP_AJ_P0030357 Dhx33 protein_coding protein_coding MGP_AJ_T0030358.1 MGP_AJ_G0018589.1 mouse_genomes_project 11 68842774 68860871 - MGP_AJ_P0030358 Dhx33 protein_coding nonsense_mediated_decay MGP_AJ_T0030359.1 MGP_AJ_G0018589.1 mouse_genomes_project 11 68847737 68851211 - Dhx33 protein_coding retained_intron MGP_AJ_T0030360.1 MGP_AJ_G0018589.1 mouse_genomes_project 11 68848147 68852016 - MGP_AJ_P0030360 Dhx33 protein_coding nonsense_mediated_decay MGP_AJ_T0030361.1 MGP_AJ_G0018589.1 mouse_genomes_project 11 68849132 68850040 - Dhx33 protein_coding retained_intron MGP_AJ_T0030362.1 MGP_AJ_G0018589.1 mouse_genomes_project 11 68855138 68860968 - Dhx33 protein_coding retained_intron MGP_AJ_T0031902.1 MGP_AJ_G0018986.1 mouse_genomes_project 11 95261572 95285848 - MGP_AJ_P0031902 Sp2 protein_coding unknown_likely_coding MGP_AJ_T0031903.1 MGP_AJ_G0018986.1 mouse_genomes_project 11 95261578 95285849 - MGP_AJ_P0031903 Sp2 protein_coding protein_coding MGP_AJ_T0032233.1 MGP_AJ_G0019090.1 mouse_genomes_project 11 98182422 98183409 + MGP_AJ_P0032233 Krtap4-9 protein_coding protein_coding MGP_AJ_T0027936.1 MGP_AJ_G0017989.1 mouse_genomes_project 11 3162803 3164418 + MGP_AJ_P0027936 A730071L15Rik protein_coding protein_coding MGP_AJ_T0000848.1 MGP_AJ_G0000783.1 mouse_genomes_project 11 82343120 82345434 + TEC TEC MGP_AJ_T0028656.1 MGP_AJ_G0018165.1 mouse_genomes_project 11 43575677 43585721 + Fam71b protein_coding processed_transcript MGP_AJ_T0028657.1 MGP_AJ_G0018165.1 mouse_genomes_project 11 43583829 43587067 + MGP_AJ_P0028657 Fam71b protein_coding protein_coding MGP_AJ_T0017212.1 MGP_AJ_G0015158.1 mouse_genomes_project 11 73085115 73090172 + 1700016P03Rik processed_transcript processed_transcript MGP_AJ_T0012688.1 MGP_AJ_G0010783.1 mouse_genomes_project 11 76107986 76108229 - processed_pseudogene processed_pseudogene MGP_AJ_T0027973.1 MGP_AJ_G0017999.1 mouse_genomes_project 11 3523874 3573876 + MGP_AJ_P0027973 Ccm2 protein_coding protein_coding MGP_AJ_T0027974.1 MGP_AJ_G0017999.1 mouse_genomes_project 11 3523897 3566842 + MGP_AJ_P0027974 Ccm2 protein_coding protein_coding MGP_AJ_T0027975.1 MGP_AJ_G0017999.1 mouse_genomes_project 11 3537577 3573866 + MGP_AJ_P0027975 Ccm2 protein_coding protein_coding MGP_AJ_T0027976.1 MGP_AJ_G0017999.1 mouse_genomes_project 11 3538519 3570495 + MGP_AJ_P0027976 Ccm2 protein_coding nonsense_mediated_decay MGP_AJ_T0027977.1 MGP_AJ_G0017999.1 mouse_genomes_project 11 3538528 3540360 + Ccm2 protein_coding processed_transcript MGP_AJ_T0027978.1 MGP_AJ_G0017999.1 mouse_genomes_project 11 3538541 3570432 + MGP_AJ_P0027978 Ccm2 protein_coding protein_coding MGP_AJ_T0027979.1 MGP_AJ_G0017999.1 mouse_genomes_project 11 3538637 3573874 + MGP_AJ_P0027979 Ccm2 protein_coding protein_coding MGP_AJ_T0027980.1 MGP_AJ_G0017999.1 mouse_genomes_project 11 3570409 3571630 + Ccm2 protein_coding retained_intron MGP_AJ_T0029659.1 MGP_AJ_G0018437.1 mouse_genomes_project 11 60881455 60911954 + MGP_AJ_P0029659 Pmp22 protein_coding protein_coding MGP_AJ_T0029660.1 MGP_AJ_G0018437.1 mouse_genomes_project 11 60883985 60911955 + MGP_AJ_P0029660 Pmp22 protein_coding protein_coding MGP_AJ_T0029661.1 MGP_AJ_G0018437.1 mouse_genomes_project 11 60885042 60910892 + MGP_AJ_P0029661 Pmp22 protein_coding protein_coding MGP_AJ_T0029662.1 MGP_AJ_G0018437.1 mouse_genomes_project 11 60885276 60886963 + Pmp22 protein_coding processed_transcript MGP_AJ_T0029663.1 MGP_AJ_G0018437.1 mouse_genomes_project 11 60885541 60910974 + MGP_AJ_P0029663 Pmp22 protein_coding protein_coding MGP_AJ_T0101712.1 MGP_AJ_G0039658.1 mouse_genomes_project 11 106181197 106181572 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0028335.1 MGP_AJ_G0018081.1 mouse_genomes_project 11 26539275 26540101 - Rps27a protein_coding processed_transcript MGP_AJ_T0028336.1 MGP_AJ_G0018081.1 mouse_genomes_project 11 26539275 26541290 - MGP_AJ_P0028336 Rps27a protein_coding protein_coding MGP_AJ_T0028337.1 MGP_AJ_G0018081.1 mouse_genomes_project 11 26539275 26541539 - MGP_AJ_P0028337 Rps27a protein_coding protein_coding MGP_AJ_T0028338.1 MGP_AJ_G0018081.1 mouse_genomes_project 11 26539328 26541312 - Rps27a protein_coding processed_transcript MGP_AJ_T0028339.1 MGP_AJ_G0018081.1 mouse_genomes_project 11 26540545 26541321 - Rps27a protein_coding processed_transcript MGP_AJ_T0012584.1 MGP_AJ_G0010679.1 mouse_genomes_project 11 43209459 43209801 + processed_pseudogene processed_pseudogene MGP_AJ_T0033269.1 MGP_AJ_G0019325.1 mouse_genomes_project 11 113440344 113445296 + MGP_AJ_P0033269 Rpl38 protein_coding protein_coding MGP_AJ_T0033270.1 MGP_AJ_G0019325.1 mouse_genomes_project 11 113440368 113445296 + MGP_AJ_P0033270 Rpl38 protein_coding protein_coding MGP_AJ_T0033271.1 MGP_AJ_G0019325.1 mouse_genomes_project 11 113440429 113445296 + MGP_AJ_P0033271 Rpl38 protein_coding protein_coding MGP_AJ_T0033272.1 MGP_AJ_G0019325.1 mouse_genomes_project 11 113440446 113445296 + MGP_AJ_P0033272 Rpl38 protein_coding protein_coding MGP_AJ_T0033273.1 MGP_AJ_G0019325.1 mouse_genomes_project 11 113440625 113444334 + MGP_AJ_P0033273 Rpl38 protein_coding unknown_likely_coding MGP_AJ_T0006244.1 MGP_AJ_G0005215.1 mouse_genomes_project 11 55450627 55453556 - Gm12249 lincRNA lincRNA MGP_AJ_T0033467.1 MGP_AJ_G0019368.1 mouse_genomes_project 11 114591031 114623241 + MGP_AJ_P0033467 Tmem94 protein_coding protein_coding MGP_AJ_T0033468.1 MGP_AJ_G0019368.1 mouse_genomes_project 11 114591040 114609746 + MGP_AJ_P0033468 Tmem94 protein_coding protein_coding MGP_AJ_T0033469.1 MGP_AJ_G0019368.1 mouse_genomes_project 11 114591041 114610070 + MGP_AJ_P0033469 Tmem94 protein_coding protein_coding MGP_AJ_T0033470.1 MGP_AJ_G0019368.1 mouse_genomes_project 11 114591052 114609989 + MGP_AJ_P0033470 Tmem94 protein_coding protein_coding MGP_AJ_T0033471.1 MGP_AJ_G0019368.1 mouse_genomes_project 11 114592306 114601065 + Tmem94 protein_coding processed_transcript MGP_AJ_T0033472.1 MGP_AJ_G0019368.1 mouse_genomes_project 11 114599389 114622908 + MGP_AJ_P0033472 Tmem94 protein_coding protein_coding MGP_AJ_T0033473.1 MGP_AJ_G0019368.1 mouse_genomes_project 11 114612750 114615799 + MGP_AJ_P0033473 Tmem94 protein_coding protein_coding MGP_AJ_T0029291.1 MGP_AJ_G0018360.1 mouse_genomes_project 11 56765558 56769529 + MGP_AJ_P0029291 Mrpl55 protein_coding protein_coding MGP_AJ_T0029292.1 MGP_AJ_G0018360.1 mouse_genomes_project 11 56765561 56769490 + MGP_AJ_P0029292 Mrpl55 protein_coding protein_coding MGP_AJ_T0029293.1 MGP_AJ_G0018360.1 mouse_genomes_project 11 56765564 56769736 + MGP_AJ_P0029293 Mrpl55 protein_coding protein_coding MGP_AJ_T0029294.1 MGP_AJ_G0018360.1 mouse_genomes_project 11 56765577 56769604 + MGP_AJ_P0029294 Mrpl55 protein_coding protein_coding MGP_AJ_T0029295.1 MGP_AJ_G0018360.1 mouse_genomes_project 11 56765610 56769490 + MGP_AJ_P0029295 Mrpl55 protein_coding protein_coding MGP_AJ_T0012554.1 MGP_AJ_G0010649.1 mouse_genomes_project 11 27781475 27781799 - processed_pseudogene processed_pseudogene MGP_AJ_T0029157.1 MGP_AJ_G0018300.1 mouse_genomes_project 11 52932126 52946760 - MGP_AJ_P0029157 Atox1 protein_coding protein_coding MGP_AJ_T0029158.1 MGP_AJ_G0018300.1 mouse_genomes_project 11 52932129 52946718 - Atox1 protein_coding processed_transcript MGP_AJ_T0017261.1 MGP_AJ_G0015188.1 mouse_genomes_project 11 103963786 103991031 + Gm11638 processed_transcript processed_transcript MGP_AJ_T0033828.1 MGP_AJ_G0019438.1 mouse_genomes_project 11 117377109 117802439 - MGP_AJ_P0033828 Rbfox3 protein_coding protein_coding MGP_AJ_T0033829.1 MGP_AJ_G0019438.1 mouse_genomes_project 11 117377111 117649831 - MGP_AJ_P0033829 Rbfox3 protein_coding protein_coding MGP_AJ_T0033830.1 MGP_AJ_G0019438.1 mouse_genomes_project 11 117378502 117802451 - MGP_AJ_P0033830 Rbfox3 protein_coding protein_coding MGP_AJ_T0033831.1 MGP_AJ_G0019438.1 mouse_genomes_project 11 117378502 117804474 - MGP_AJ_P0033831 Rbfox3 protein_coding protein_coding MGP_AJ_T0033832.1 MGP_AJ_G0019438.1 mouse_genomes_project 11 117378550 117802439 - MGP_AJ_P0033832 Rbfox3 protein_coding protein_coding MGP_AJ_T0033833.1 MGP_AJ_G0019438.1 mouse_genomes_project 11 117379341 117802441 - MGP_AJ_P0033833 Rbfox3 protein_coding protein_coding MGP_AJ_T0033834.1 MGP_AJ_G0019438.1 mouse_genomes_project 11 117383844 117394732 - MGP_AJ_P0033834 Rbfox3 protein_coding protein_coding MGP_AJ_T0033835.1 MGP_AJ_G0019438.1 mouse_genomes_project 11 117390220 117457945 - MGP_AJ_P0033835 Rbfox3 protein_coding protein_coding MGP_AJ_T0033836.1 MGP_AJ_G0019438.1 mouse_genomes_project 11 117702877 117781602 - Rbfox3 protein_coding processed_transcript MGP_AJ_T0033837.1 MGP_AJ_G0019438.1 mouse_genomes_project 11 117702879 117800894 - Rbfox3 protein_coding processed_transcript MGP_AJ_T0029459.1 MGP_AJ_G0018400.1 mouse_genomes_project 11 58710064 58757221 + MGP_AJ_P0029459 Kcnj12 protein_coding protein_coding MGP_AJ_T0029460.1 MGP_AJ_G0018400.1 mouse_genomes_project 11 58751905 58757221 + MGP_AJ_P0029460 Kcnj12 protein_coding protein_coding MGP_AJ_T0029461.1 MGP_AJ_G0018400.1 mouse_genomes_project 11 58751905 58757217 + MGP_AJ_P0029461 Kcnj12 protein_coding protein_coding MGP_AJ_T0101944.1 MGP_AJ_G0039789.1 mouse_genomes_project 11 46727326 46730804 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_AJ_T0011793.1 MGP_AJ_G0009914.1 mouse_genomes_project 11 71345793 71346734 - MGP_AJ_P0011793 polymorphic_pseudogene polymorphic_pseudogene MGP_AJ_T0031425.1 MGP_AJ_G0018866.1 mouse_genomes_project 11 85260070 85279427 - MGP_AJ_P0031425 Prr11 protein_coding protein_coding MGP_AJ_T0099323.1 MGP_AJ_G0037289.1 mouse_genomes_project 11 36994093 36994238 + Gm24192 snRNA snRNA MGP_AJ_T0009743.1 MGP_AJ_G0007865.1 mouse_genomes_project 11 96362103 96362183 + Gm27597 miRNA miRNA MGP_AJ_T0100612.1 MGP_AJ_G0038578.1 mouse_genomes_project 11 75609282 75609414 - Gm23132 snoRNA snoRNA MGP_AJ_T0009670.1 MGP_AJ_G0007792.1 mouse_genomes_project 11 40525836 40525901 - Mir146 miRNA miRNA MGP_AJ_T0028491.1 MGP_AJ_G0018121.1 mouse_genomes_project 11 31066601 31077244 + MGP_AJ_P0028491 Kcnmb1 protein_coding protein_coding MGP_AJ_T0006279.1 MGP_AJ_G0005243.1 mouse_genomes_project 11 73336455 73337063 - Gm12336 lincRNA lincRNA MGP_AJ_T0011311.1 MGP_AJ_G0009433.1 mouse_genomes_project 11 94482741 94482821 - Gm27898 misc_RNA misc_RNA MGP_AJ_T0031389.1 MGP_AJ_G0018857.1 mouse_genomes_project 11 84672139 84720880 - MGP_AJ_P0031389 Rps6kb1 protein_coding protein_coding MGP_AJ_T0031390.1 MGP_AJ_G0018857.1 mouse_genomes_project 11 84675308 84720880 - Rps6kb1 protein_coding retained_intron MGP_AJ_T0031391.1 MGP_AJ_G0018857.1 mouse_genomes_project 11 84675872 84684955 - Rps6kb1 protein_coding processed_transcript MGP_AJ_T0031392.1 MGP_AJ_G0018857.1 mouse_genomes_project 11 84686937 84693357 - Rps6kb1 protein_coding processed_transcript MGP_AJ_T0031393.1 MGP_AJ_G0018857.1 mouse_genomes_project 11 84687302 84720849 - MGP_AJ_P0031393 Rps6kb1 protein_coding protein_coding MGP_AJ_T0031394.1 MGP_AJ_G0018857.1 mouse_genomes_project 11 84692961 84708910 - Rps6kb1 protein_coding retained_intron MGP_AJ_T0031395.1 MGP_AJ_G0018857.1 mouse_genomes_project 11 84708841 84720840 - MGP_AJ_P0031395 Rps6kb1 protein_coding protein_coding MGP_AJ_T0033053.1 MGP_AJ_G0019280.1 mouse_genomes_project 11 105400298 105411560 - MGP_AJ_P0033053 Polg2 protein_coding protein_coding MGP_AJ_T0033054.1 MGP_AJ_G0019280.1 mouse_genomes_project 11 105400298 105411582 - MGP_AJ_P0033054 Polg2 protein_coding nonsense_mediated_decay MGP_AJ_T0033055.1 MGP_AJ_G0019280.1 mouse_genomes_project 11 105400778 105411518 - MGP_AJ_P0033055 Polg2 protein_coding nonsense_mediated_decay MGP_AJ_T0033056.1 MGP_AJ_G0019280.1 mouse_genomes_project 11 105403089 105411518 - MGP_AJ_P0033056 Polg2 protein_coding nonsense_mediated_decay MGP_AJ_T0033057.1 MGP_AJ_G0019280.1 mouse_genomes_project 11 105404685 105405894 - Polg2 protein_coding retained_intron MGP_AJ_T0033058.1 MGP_AJ_G0019280.1 mouse_genomes_project 11 105407558 105411547 - MGP_AJ_P0033058 Polg2 protein_coding nonsense_mediated_decay MGP_AJ_T0032508.1 MGP_AJ_G0019170.1 mouse_genomes_project 11 99918865 99927349 + MGP_AJ_P0032508 protein_coding protein_coding MGP_AJ_T0032509.1 MGP_AJ_G0019170.1 mouse_genomes_project 11 99919005 99920502 + protein_coding processed_transcript MGP_AJ_T0032510.1 MGP_AJ_G0019170.1 mouse_genomes_project 11 99919013 99927349 + MGP_AJ_P0032510 protein_coding protein_coding MGP_AJ_T0032511.1 MGP_AJ_G0019170.1 mouse_genomes_project 11 99919292 99927307 + MGP_AJ_P0032511 protein_coding unknown_likely_coding MGP_AJ_T0032512.1 MGP_AJ_G0019170.1 mouse_genomes_project 11 99920179 99927349 + MGP_AJ_P0032512 protein_coding protein_coding MGP_AJ_T0032513.1 MGP_AJ_G0019170.1 mouse_genomes_project 11 99921441 99927349 + protein_coding processed_transcript MGP_AJ_T0031502.1 MGP_AJ_G0018882.1 mouse_genomes_project 11 86058613 86069858 - MGP_AJ_P0031502 Epx protein_coding protein_coding MGP_AJ_T0031503.1 MGP_AJ_G0018882.1 mouse_genomes_project 11 86063723 86066126 - Epx protein_coding processed_transcript MGP_AJ_T0100600.1 MGP_AJ_G0038566.1 mouse_genomes_project 11 66864340 66864475 + Snord118 snoRNA snoRNA MGP_AJ_T0029869.1 MGP_AJ_G0018486.1 mouse_genomes_project 11 66879576 66883471 + MGP_AJ_P0029869 Vamp2 protein_coding protein_coding MGP_AJ_T0029870.1 MGP_AJ_G0018486.1 mouse_genomes_project 11 66879596 66881777 + MGP_AJ_P0029870 Vamp2 protein_coding protein_coding MGP_AJ_T0029871.1 MGP_AJ_G0018486.1 mouse_genomes_project 11 66879608 66880762 + Vamp2 protein_coding retained_intron MGP_AJ_T0029872.1 MGP_AJ_G0018486.1 mouse_genomes_project 11 66879629 66881137 + Vamp2 protein_coding processed_transcript MGP_AJ_T0029873.1 MGP_AJ_G0018486.1 mouse_genomes_project 11 66880692 66881263 + Vamp2 protein_coding retained_intron MGP_AJ_T0033523.1 MGP_AJ_G0019377.1 mouse_genomes_project 11 114804367 114837541 + MGP_AJ_P0033523 Itgb4 protein_coding protein_coding MGP_AJ_T0033524.1 MGP_AJ_G0019377.1 mouse_genomes_project 11 114804383 114837540 + MGP_AJ_P0033524 Itgb4 protein_coding protein_coding MGP_AJ_T0033525.1 MGP_AJ_G0019377.1 mouse_genomes_project 11 114804383 114837540 + MGP_AJ_P0033525 Itgb4 protein_coding protein_coding MGP_AJ_T0033526.1 MGP_AJ_G0019377.1 mouse_genomes_project 11 114804501 114824472 + Itgb4 protein_coding processed_transcript MGP_AJ_T0033527.1 MGP_AJ_G0019377.1 mouse_genomes_project 11 114804637 114837541 + MGP_AJ_P0033527 Itgb4 protein_coding protein_coding MGP_AJ_T0033528.1 MGP_AJ_G0019377.1 mouse_genomes_project 11 114807442 114837541 + MGP_AJ_P0033528 Itgb4 protein_coding protein_coding MGP_AJ_T0033529.1 MGP_AJ_G0019377.1 mouse_genomes_project 11 114807442 114837541 + MGP_AJ_P0033529 Itgb4 protein_coding protein_coding MGP_AJ_T0033530.1 MGP_AJ_G0019377.1 mouse_genomes_project 11 114819686 114820792 + Itgb4 protein_coding processed_transcript MGP_AJ_T0033531.1 MGP_AJ_G0019377.1 mouse_genomes_project 11 114820693 114821715 + Itgb4 protein_coding processed_transcript MGP_AJ_T0033532.1 MGP_AJ_G0019377.1 mouse_genomes_project 11 114822643 114824042 + Itgb4 protein_coding processed_transcript MGP_AJ_T0033478.1 MGP_AJ_G0019370.1 mouse_genomes_project 11 114638777 114647179 + MGP_AJ_P0033478 Tsen54 protein_coding protein_coding MGP_AJ_T0033479.1 MGP_AJ_G0019370.1 mouse_genomes_project 11 114638777 114647179 + MGP_AJ_P0033479 Tsen54 protein_coding protein_coding MGP_AJ_T0033480.1 MGP_AJ_G0019370.1 mouse_genomes_project 11 114638799 114639599 + Tsen54 protein_coding retained_intron MGP_AJ_T0033481.1 MGP_AJ_G0019370.1 mouse_genomes_project 11 114638824 114644563 + Tsen54 protein_coding retained_intron MGP_AJ_T0033482.1 MGP_AJ_G0019370.1 mouse_genomes_project 11 114638858 114644542 + Tsen54 protein_coding retained_intron MGP_AJ_T0033483.1 MGP_AJ_G0019370.1 mouse_genomes_project 11 114639751 114645734 + MGP_AJ_P0033483 Tsen54 protein_coding protein_coding MGP_AJ_T0033484.1 MGP_AJ_G0019370.1 mouse_genomes_project 11 114644744 114647174 + MGP_AJ_P0033484 Tsen54 protein_coding protein_coding MGP_AJ_T0033485.1 MGP_AJ_G0019370.1 mouse_genomes_project 11 114644880 114646357 + MGP_AJ_P0033485 Tsen54 protein_coding protein_coding MGP_AJ_T0032221.1 MGP_AJ_G0019078.1 mouse_genomes_project 11 98020382 98021366 - MGP_AJ_P0032221 Krtap4-7 protein_coding protein_coding MGP_AJ_T0031175.1 MGP_AJ_G0018800.1 mouse_genomes_project 11 80940915 80950271 + MGP_AJ_P0031175 Fndc8 protein_coding protein_coding MGP_AJ_T0033314.1 MGP_AJ_G0019336.1 mouse_genomes_project 11 113790170 113796731 - MGP_AJ_P0033314 Cd300c2 protein_coding protein_coding MGP_AJ_T0033315.1 MGP_AJ_G0019336.1 mouse_genomes_project 11 113790171 113796731 - MGP_AJ_P0033315 Cd300c2 protein_coding nonsense_mediated_decay MGP_AJ_T0012558.1 MGP_AJ_G0010653.1 mouse_genomes_project 11 28141711 28142490 + processed_pseudogene processed_pseudogene MGP_AJ_T0030535.1 MGP_AJ_G0018643.1 mouse_genomes_project 11 71767584 71768523 - MGP_AJ_P0030535 Olfr393 protein_coding protein_coding MGP_AJ_T0032982.1 MGP_AJ_G0019263.1 mouse_genomes_project 11 104785719 104786028 + MGP_AJ_P0032982 Gm10840 protein_coding protein_coding MGP_AJ_T0012724.1 MGP_AJ_G0010819.1 mouse_genomes_project 11 91930932 91931396 + processed_pseudogene processed_pseudogene MGP_AJ_T0009709.1 MGP_AJ_G0007831.1 mouse_genomes_project 11 70280207 70280316 + Mir6338 miRNA miRNA MGP_AJ_T0009705.1 MGP_AJ_G0007827.1 mouse_genomes_project 11 68066896 68066990 + Mir195a miRNA miRNA MGP_AJ_T0006364.1 MGP_AJ_G0005303.1 mouse_genomes_project 11 115149192 115151839 + Gm26730 lincRNA lincRNA MGP_AJ_T0012645.1 MGP_AJ_G0010740.1 mouse_genomes_project 11 60056592 60056893 + processed_pseudogene processed_pseudogene MGP_AJ_T0032993.1 MGP_AJ_G0019266.1 mouse_genomes_project 11 104844239 104876105 + MGP_AJ_P0032993 Ddx42 protein_coding protein_coding MGP_AJ_T0032994.1 MGP_AJ_G0019266.1 mouse_genomes_project 11 104864295 104865825 + Ddx42 protein_coding processed_transcript MGP_AJ_T0029759.1 MGP_AJ_G0018465.1 mouse_genomes_project 11 65627185 65690980 - MGP_AJ_P0029759 Usp43 protein_coding protein_coding MGP_AJ_T0029760.1 MGP_AJ_G0018465.1 mouse_genomes_project 11 65627185 65690980 - MGP_AJ_P0029760 Usp43 protein_coding protein_coding MGP_AJ_T0029761.1 MGP_AJ_G0018465.1 mouse_genomes_project 11 65628019 65642891 - Usp43 protein_coding retained_intron MGP_AJ_T0029762.1 MGP_AJ_G0018465.1 mouse_genomes_project 11 65665180 65690036 - Usp43 protein_coding processed_transcript MGP_AJ_T0027797.1 MGP_AJ_G0017962.1 mouse_genomes_project 11 1717670 1803048 - MGP_AJ_P0027797 Nf2 protein_coding protein_coding MGP_AJ_T0027798.1 MGP_AJ_G0017962.1 mouse_genomes_project 11 1717670 1802497 - MGP_AJ_P0027798 Nf2 protein_coding protein_coding MGP_AJ_T0027799.1 MGP_AJ_G0017962.1 mouse_genomes_project 11 1719743 1737395 - Nf2 protein_coding retained_intron MGP_AJ_T0027800.1 MGP_AJ_G0017962.1 mouse_genomes_project 11 1734224 1785982 - Nf2 protein_coding processed_transcript MGP_AJ_T0027801.1 MGP_AJ_G0017962.1 mouse_genomes_project 11 1736723 1768403 - MGP_AJ_P0027801 Nf2 protein_coding nonsense_mediated_decay MGP_AJ_T0027802.1 MGP_AJ_G0017962.1 mouse_genomes_project 11 1743477 1802706 - MGP_AJ_P0027802 Nf2 protein_coding protein_coding MGP_AJ_T0027803.1 MGP_AJ_G0017962.1 mouse_genomes_project 11 1746707 1767478 - Nf2 protein_coding processed_transcript MGP_AJ_T0027804.1 MGP_AJ_G0017962.1 mouse_genomes_project 11 1746756 1770785 - MGP_AJ_P0027804 Nf2 protein_coding protein_coding MGP_AJ_T0027805.1 MGP_AJ_G0017962.1 mouse_genomes_project 11 1752089 1772615 - MGP_AJ_P0027805 Nf2 protein_coding nonsense_mediated_decay MGP_AJ_T0027806.1 MGP_AJ_G0017962.1 mouse_genomes_project 11 1770742 1777386 - Nf2 protein_coding processed_transcript MGP_AJ_T0027807.1 MGP_AJ_G0017962.1 mouse_genomes_project 11 1782293 1802637 - MGP_AJ_P0027807 Nf2 protein_coding protein_coding MGP_AJ_T0027753.1 MGP_AJ_G0017949.1 mouse_genomes_project 11 1084248 1090807 - Ccdc157 protein_coding processed_transcript MGP_AJ_T0027754.1 MGP_AJ_G0017949.1 mouse_genomes_project 11 1086830 1103476 - MGP_AJ_P0027754 Ccdc157 protein_coding protein_coding MGP_AJ_T0027755.1 MGP_AJ_G0017949.1 mouse_genomes_project 11 1091955 1103432 - Ccdc157 protein_coding processed_transcript MGP_AJ_T0027756.1 MGP_AJ_G0017949.1 mouse_genomes_project 11 1093221 1103432 - Ccdc157 protein_coding processed_transcript MGP_AJ_T0027757.1 MGP_AJ_G0017949.1 mouse_genomes_project 11 1094704 1103466 - Ccdc157 protein_coding processed_transcript MGP_AJ_T0031417.1 MGP_AJ_G0018862.1 mouse_genomes_project 11 84950026 84988471 - MGP_AJ_P0031417 Dhx40 protein_coding protein_coding MGP_AJ_T0031418.1 MGP_AJ_G0018862.1 mouse_genomes_project 11 84956547 84981765 - MGP_AJ_P0031418 Dhx40 protein_coding protein_coding MGP_AJ_T0031419.1 MGP_AJ_G0018862.1 mouse_genomes_project 11 84965237 84969847 - Dhx40 protein_coding processed_transcript MGP_AJ_T0031420.1 MGP_AJ_G0018862.1 mouse_genomes_project 11 84980505 84987764 - Dhx40 protein_coding processed_transcript MGP_AJ_T0099336.1 MGP_AJ_G0037302.1 mouse_genomes_project 11 66785725 66785809 + Gm25819 snRNA snRNA MGP_AJ_T0012712.1 MGP_AJ_G0010807.1 mouse_genomes_project 11 85645317 85646697 + processed_pseudogene processed_pseudogene MGP_AJ_T0031044.1 MGP_AJ_G0018765.1 mouse_genomes_project 11 77518766 77535973 - MGP_AJ_P0031044 Gm21975 protein_coding protein_coding MGP_AJ_T0031045.1 MGP_AJ_G0018765.1 mouse_genomes_project 11 77518766 77535943 - MGP_AJ_P0031045 Gm21975 protein_coding nonsense_mediated_decay MGP_AJ_T0029657.1 MGP_AJ_G0018435.1 mouse_genomes_project 11 60704604 60740613 + MGP_AJ_P0029657 Cdrt4 protein_coding protein_coding MGP_AJ_T0028374.1 MGP_AJ_G0018089.1 mouse_genomes_project 11 27799301 27912634 + MGP_AJ_P0028374 Psme4 protein_coding protein_coding MGP_AJ_T0028375.1 MGP_AJ_G0018089.1 mouse_genomes_project 11 27799897 27837684 + MGP_AJ_P0028375 Psme4 protein_coding protein_coding MGP_AJ_T0028376.1 MGP_AJ_G0018089.1 mouse_genomes_project 11 27844873 27847222 + Psme4 protein_coding processed_transcript MGP_AJ_T0028377.1 MGP_AJ_G0018089.1 mouse_genomes_project 11 27863560 27867613 + Psme4 protein_coding processed_transcript MGP_AJ_T0028378.1 MGP_AJ_G0018089.1 mouse_genomes_project 11 27865839 27866508 + Psme4 protein_coding processed_transcript MGP_AJ_T0028379.1 MGP_AJ_G0018089.1 mouse_genomes_project 11 27885799 27890178 + MGP_AJ_P0028379 Psme4 protein_coding protein_coding MGP_AJ_T0028380.1 MGP_AJ_G0018089.1 mouse_genomes_project 11 27898503 27906402 + Psme4 protein_coding processed_transcript MGP_AJ_T0029254.1 MGP_AJ_G0018345.1 mouse_genomes_project 11 56312127 56313043 + MGP_AJ_P0029254 protein_coding protein_coding MGP_AJ_T0029573.1 MGP_AJ_G0018421.1 mouse_genomes_project 11 60005426 60006542 + Ttc19 protein_coding processed_transcript MGP_AJ_T0029574.1 MGP_AJ_G0018421.1 mouse_genomes_project 11 60005435 60040078 + MGP_AJ_P0029574 Ttc19 protein_coding protein_coding MGP_AJ_T0029575.1 MGP_AJ_G0018421.1 mouse_genomes_project 11 60005437 60041258 + MGP_AJ_P0029575 Ttc19 protein_coding protein_coding MGP_AJ_T0029576.1 MGP_AJ_G0018421.1 mouse_genomes_project 11 60007620 60052969 + MGP_AJ_P0029576 Ttc19 protein_coding protein_coding MGP_AJ_T0029577.1 MGP_AJ_G0018421.1 mouse_genomes_project 11 60032990 60053276 + Ttc19 protein_coding processed_transcript MGP_AJ_T0012786.1 MGP_AJ_G0010881.1 mouse_genomes_project 11 115402332 115402542 + processed_pseudogene processed_pseudogene MGP_AJ_T0032495.1 MGP_AJ_G0019166.1 mouse_genomes_project 11 99883264 99900834 - MGP_AJ_P0032495 Gm27029 protein_coding protein_coding MGP_AJ_T0032497.1 MGP_AJ_G0019166.1 mouse_genomes_project 11 99883439 99901111 - MGP_AJ_P0032497 Gm27029 protein_coding protein_coding MGP_AJ_T0100625.1 MGP_AJ_G0038591.1 mouse_genomes_project 11 97066581 97066685 - Gm22059 snoRNA snoRNA MGP_AJ_T0011292.1 MGP_AJ_G0009414.1 mouse_genomes_project 11 570165 570401 - Gm27517 misc_RNA misc_RNA MGP_AJ_T0003206.1 MGP_AJ_G0002970.1 mouse_genomes_project 11 61835057 61838833 + 2810001G20Rik antisense antisense MGP_AJ_T0003207.1 MGP_AJ_G0002970.1 mouse_genomes_project 11 61835155 61838833 + 2810001G20Rik antisense antisense MGP_AJ_T0012491.1 MGP_AJ_G0010586.1 mouse_genomes_project 11 11977425 11978525 + processed_pseudogene processed_pseudogene MGP_AJ_T0033542.1 MGP_AJ_G0019381.1 mouse_genomes_project 11 114896750 114912927 - MGP_AJ_P0033542 Unc13d protein_coding protein_coding MGP_AJ_T0033543.1 MGP_AJ_G0019381.1 mouse_genomes_project 11 114896751 114913138 - MGP_AJ_P0033543 Unc13d protein_coding protein_coding MGP_AJ_T0033544.1 MGP_AJ_G0019381.1 mouse_genomes_project 11 114896751 114913138 - MGP_AJ_P0033544 Unc13d protein_coding protein_coding MGP_AJ_T0033545.1 MGP_AJ_G0019381.1 mouse_genomes_project 11 114897231 114912801 - MGP_AJ_P0033545 Unc13d protein_coding nonsense_mediated_decay MGP_AJ_T0033546.1 MGP_AJ_G0019381.1 mouse_genomes_project 11 114897315 114912767 - MGP_AJ_P0033546 Unc13d protein_coding protein_coding MGP_AJ_T0033547.1 MGP_AJ_G0019381.1 mouse_genomes_project 11 114904077 114905638 - Unc13d protein_coding retained_intron MGP_AJ_T0033548.1 MGP_AJ_G0019381.1 mouse_genomes_project 11 114911283 114912227 - MGP_AJ_P0033548 Unc13d protein_coding protein_coding MGP_AJ_T0033549.1 MGP_AJ_G0019381.1 mouse_genomes_project 11 114911646 114913118 - MGP_AJ_P0033549 Unc13d protein_coding protein_coding MGP_AJ_T0006207.1 MGP_AJ_G0005182.1 mouse_genomes_project 11 26578882 26580758 + Gm12088 lincRNA lincRNA MGP_AJ_T0030556.1 MGP_AJ_G0018655.1 mouse_genomes_project 11 72184745 72185834 + MGP_AJ_P0030556 Olfr406 protein_coding protein_coding MGP_AJ_T0003283.1 MGP_AJ_G0003030.1 mouse_genomes_project 11 96784876 96785886 + Gm12352 antisense antisense MGP_AJ_T0032629.1 MGP_AJ_G0019194.1 mouse_genomes_project 11 100708267 100744502 - MGP_AJ_P0032629 Hdac5 protein_coding protein_coding MGP_AJ_T0032630.1 MGP_AJ_G0019194.1 mouse_genomes_project 11 100709579 100744460 - MGP_AJ_P0032630 Hdac5 protein_coding protein_coding MGP_AJ_T0032631.1 MGP_AJ_G0019194.1 mouse_genomes_project 11 100709582 100711021 - Hdac5 protein_coding retained_intron MGP_AJ_T0032632.1 MGP_AJ_G0019194.1 mouse_genomes_project 11 100709584 100711704 - Hdac5 protein_coding retained_intron MGP_AJ_T0032633.1 MGP_AJ_G0019194.1 mouse_genomes_project 11 100709584 100733266 - Hdac5 protein_coding retained_intron MGP_AJ_T0032634.1 MGP_AJ_G0019194.1 mouse_genomes_project 11 100709584 100710394 - Hdac5 protein_coding retained_intron MGP_AJ_T0032635.1 MGP_AJ_G0019194.1 mouse_genomes_project 11 100709584 100710404 - MGP_AJ_P0032635 Hdac5 protein_coding protein_coding MGP_AJ_T0032636.1 MGP_AJ_G0019194.1 mouse_genomes_project 11 100709584 100744475 - MGP_AJ_P0032636 Hdac5 protein_coding nonsense_mediated_decay MGP_AJ_T0032637.1 MGP_AJ_G0019194.1 mouse_genomes_project 11 100709586 100744472 - MGP_AJ_P0032637 Hdac5 protein_coding protein_coding MGP_AJ_T0032638.1 MGP_AJ_G0019194.1 mouse_genomes_project 11 100709586 100744502 - MGP_AJ_P0032638 Hdac5 protein_coding protein_coding MGP_AJ_T0032639.1 MGP_AJ_G0019194.1 mouse_genomes_project 11 100710072 100711915 - Hdac5 protein_coding retained_intron MGP_AJ_T0032640.1 MGP_AJ_G0019194.1 mouse_genomes_project 11 100710516 100712731 - Hdac5 protein_coding retained_intron MGP_AJ_T0032641.1 MGP_AJ_G0019194.1 mouse_genomes_project 11 100712514 100713329 - Hdac5 protein_coding retained_intron MGP_AJ_T0032642.1 MGP_AJ_G0019194.1 mouse_genomes_project 11 100712799 100714193 - Hdac5 protein_coding retained_intron MGP_AJ_T0032643.1 MGP_AJ_G0019194.1 mouse_genomes_project 11 100713225 100714652 - Hdac5 protein_coding retained_intron MGP_AJ_T0032644.1 MGP_AJ_G0019194.1 mouse_genomes_project 11 100719722 100744478 - MGP_AJ_P0032644 Hdac5 protein_coding protein_coding MGP_AJ_T0032645.1 MGP_AJ_G0019194.1 mouse_genomes_project 11 100720463 100733265 - MGP_AJ_P0032645 Hdac5 protein_coding protein_coding MGP_AJ_T0032646.1 MGP_AJ_G0019194.1 mouse_genomes_project 11 100720839 100733266 - Hdac5 protein_coding retained_intron MGP_AJ_T0032647.1 MGP_AJ_G0019194.1 mouse_genomes_project 11 100733047 100744469 - Hdac5 protein_coding processed_transcript MGP_AJ_T0032648.1 MGP_AJ_G0019194.1 mouse_genomes_project 11 100733489 100744482 - Hdac5 protein_coding processed_transcript MGP_AJ_T0012466.1 MGP_AJ_G0010561.1 mouse_genomes_project 11 2647792 2648069 - processed_pseudogene processed_pseudogene MGP_AJ_T0012575.1 MGP_AJ_G0010670.1 mouse_genomes_project 11 38496837 38497381 + processed_pseudogene processed_pseudogene MGP_AJ_T0012719.1 MGP_AJ_G0010814.1 mouse_genomes_project 11 89083049 89084631 - processed_pseudogene processed_pseudogene MGP_AJ_T0029202.1 MGP_AJ_G0018316.1 mouse_genomes_project 11 55668892 55710003 + MGP_AJ_P0029202 Irgm2 protein_coding protein_coding MGP_AJ_T0029203.1 MGP_AJ_G0018316.1 mouse_genomes_project 11 55702174 55710011 + MGP_AJ_P0029203 Irgm2 protein_coding protein_coding MGP_AJ_T0029682.1 MGP_AJ_G0018445.1 mouse_genomes_project 11 62938716 63037060 - MGP_AJ_P0029682 Myocd protein_coding protein_coding MGP_AJ_T0029683.1 MGP_AJ_G0018445.1 mouse_genomes_project 11 62938729 63037108 - MGP_AJ_P0029683 Myocd protein_coding protein_coding MGP_AJ_T0029684.1 MGP_AJ_G0018445.1 mouse_genomes_project 11 62938928 62944313 - Myocd protein_coding processed_transcript MGP_AJ_T0029685.1 MGP_AJ_G0018445.1 mouse_genomes_project 11 62940583 62984923 - MGP_AJ_P0029685 Myocd protein_coding protein_coding MGP_AJ_T0029686.1 MGP_AJ_G0018445.1 mouse_genomes_project 11 62962416 62971780 - MGP_AJ_P0029686 Myocd protein_coding protein_coding MGP_AJ_T0029687.1 MGP_AJ_G0018445.1 mouse_genomes_project 11 62990097 63036973 - Myocd protein_coding processed_transcript MGP_AJ_T0031146.1 MGP_AJ_G0018794.1 mouse_genomes_project 11 80428496 80487123 + MGP_AJ_P0031146 Tmem132e protein_coding protein_coding MGP_AJ_T0031147.1 MGP_AJ_G0018794.1 mouse_genomes_project 11 80428496 80487128 + MGP_AJ_P0031147 Tmem132e protein_coding protein_coding MGP_AJ_T0031148.1 MGP_AJ_G0018794.1 mouse_genomes_project 11 80428719 80475519 + Tmem132e protein_coding processed_transcript MGP_AJ_T0031149.1 MGP_AJ_G0018794.1 mouse_genomes_project 11 80479052 80483695 + Tmem132e protein_coding retained_intron MGP_AJ_T0012750.1 MGP_AJ_G0010845.1 mouse_genomes_project 11 101076250 101076571 + processed_pseudogene processed_pseudogene MGP_AJ_T0098903.1 MGP_AJ_G0036885.1 mouse_genomes_project 11 95836915 95839199 - Gm11611 sense_intronic sense_intronic MGP_AJ_T0012658.1 MGP_AJ_G0010753.1 mouse_genomes_project 11 67549504 67550094 - processed_pseudogene processed_pseudogene MGP_AJ_T0032320.1 MGP_AJ_G0019128.1 mouse_genomes_project 11 99026495 99033321 + MGP_AJ_P0032320 Cnp protein_coding protein_coding MGP_AJ_T0032321.1 MGP_AJ_G0019128.1 mouse_genomes_project 11 99026703 99028042 + Cnp protein_coding processed_transcript MGP_AJ_T0032322.1 MGP_AJ_G0019128.1 mouse_genomes_project 11 99027115 99033321 + Cnp protein_coding processed_transcript MGP_AJ_T0032323.1 MGP_AJ_G0019128.1 mouse_genomes_project 11 99027482 99043292 + Cnp protein_coding processed_transcript MGP_AJ_T0006384.1 MGP_AJ_G0005320.1 mouse_genomes_project 11 120723321 120723523 + Gm29513 lincRNA lincRNA MGP_AJ_T0034207.1 MGP_AJ_G0019511.1 mouse_genomes_project 11 120155490 120174007 + MGP_AJ_P0034207 Narf protein_coding protein_coding MGP_AJ_T0034208.1 MGP_AJ_G0019511.1 mouse_genomes_project 11 120162803 120163714 + Narf protein_coding retained_intron MGP_AJ_T0034209.1 MGP_AJ_G0019511.1 mouse_genomes_project 11 120163285 120164077 + Narf protein_coding retained_intron MGP_AJ_T0033900.1 MGP_AJ_G0019453.1 mouse_genomes_project 11 118506481 118723675 + Rptor protein_coding retained_intron MGP_AJ_T0033901.1 MGP_AJ_G0019453.1 mouse_genomes_project 11 118506571 118680839 + Rptor protein_coding retained_intron MGP_AJ_T0033902.1 MGP_AJ_G0019453.1 mouse_genomes_project 11 118506591 118746675 + Rptor protein_coding retained_intron MGP_AJ_T0033903.1 MGP_AJ_G0019453.1 mouse_genomes_project 11 118506725 118801145 + MGP_AJ_P0033903 Rptor protein_coding protein_coding MGP_AJ_T0033904.1 MGP_AJ_G0019453.1 mouse_genomes_project 11 118507274 118801314 + MGP_AJ_P0033904 Rptor protein_coding nonsense_mediated_decay MGP_AJ_T0033905.1 MGP_AJ_G0019453.1 mouse_genomes_project 11 118561107 118767161 + Rptor protein_coding retained_intron MGP_AJ_T0033906.1 MGP_AJ_G0019453.1 mouse_genomes_project 11 118698314 118748580 + MGP_AJ_P0033906 Rptor protein_coding nonsense_mediated_decay MGP_AJ_T0033907.1 MGP_AJ_G0019453.1 mouse_genomes_project 11 118710787 118768540 + Rptor protein_coding retained_intron MGP_AJ_T0033908.1 MGP_AJ_G0019453.1 mouse_genomes_project 11 118723445 118757923 + MGP_AJ_P0033908 Rptor protein_coding protein_coding MGP_AJ_T0033909.1 MGP_AJ_G0019453.1 mouse_genomes_project 11 118757883 118797891 + MGP_AJ_P0033909 Rptor protein_coding nonsense_mediated_decay MGP_AJ_T0033910.1 MGP_AJ_G0019453.1 mouse_genomes_project 11 118757933 118759427 + Rptor protein_coding retained_intron MGP_AJ_T0033911.1 MGP_AJ_G0019453.1 mouse_genomes_project 11 118759068 118786071 + MGP_AJ_P0033911 Rptor protein_coding nonsense_mediated_decay MGP_AJ_T0006356.1 MGP_AJ_G0005296.1 mouse_genomes_project 11 111957509 111965659 - 4732490B19Rik lincRNA lincRNA MGP_AJ_T0012592.1 MGP_AJ_G0010687.1 mouse_genomes_project 11 46291838 46292148 - processed_pseudogene processed_pseudogene MGP_AJ_T0032149.1 MGP_AJ_G0019044.1 mouse_genomes_project 11 97220553 97250777 + MGP_AJ_P0032149 Wipf2 protein_coding protein_coding MGP_AJ_T0032150.1 MGP_AJ_G0019044.1 mouse_genomes_project 11 97220553 97263953 + MGP_AJ_P0032150 Wipf2 protein_coding protein_coding MGP_AJ_T0032151.1 MGP_AJ_G0019044.1 mouse_genomes_project 11 97221097 97251318 + Wipf2 protein_coding retained_intron MGP_AJ_T0032152.1 MGP_AJ_G0019044.1 mouse_genomes_project 11 97249650 97250575 + Wipf2 protein_coding retained_intron MGP_AJ_T0006194.1 MGP_AJ_G0005173.1 mouse_genomes_project 11 21133369 21149535 + Gm12066 lincRNA lincRNA MGP_AJ_T0012717.1 MGP_AJ_G0010812.1 mouse_genomes_project 11 88739035 88739575 - processed_pseudogene processed_pseudogene MGP_AJ_T0033994.1 MGP_AJ_G0019470.1 mouse_genomes_project 11 119366426 119372531 + MGP_AJ_P0033994 Ccdc137 protein_coding protein_coding MGP_AJ_T0033995.1 MGP_AJ_G0019470.1 mouse_genomes_project 11 119366437 119367681 + Ccdc137 protein_coding processed_transcript MGP_AJ_T0033996.1 MGP_AJ_G0019470.1 mouse_genomes_project 11 119366449 119367157 + Ccdc137 protein_coding retained_intron MGP_AJ_T0033997.1 MGP_AJ_G0019470.1 mouse_genomes_project 11 119366453 119368423 + MGP_AJ_P0033997 Ccdc137 protein_coding protein_coding MGP_AJ_T0033998.1 MGP_AJ_G0019470.1 mouse_genomes_project 11 119366458 119370589 + MGP_AJ_P0033998 Ccdc137 protein_coding protein_coding MGP_AJ_T0033999.1 MGP_AJ_G0019470.1 mouse_genomes_project 11 119366497 119368316 + Ccdc137 protein_coding processed_transcript MGP_AJ_T0034000.1 MGP_AJ_G0019470.1 mouse_genomes_project 11 119368112 119370705 + Ccdc137 protein_coding retained_intron MGP_AJ_T0034001.1 MGP_AJ_G0019470.1 mouse_genomes_project 11 119370638 119372530 + Ccdc137 protein_coding processed_transcript MGP_AJ_T0009686.1 MGP_AJ_G0007808.1 mouse_genomes_project 11 56900972 56901068 - Gm24756 miRNA miRNA MGP_AJ_T0100573.1 MGP_AJ_G0038539.1 mouse_genomes_project 11 12351833 12351963 + Gm25490 snoRNA snoRNA MGP_AJ_T0033360.1 MGP_AJ_G0019351.1 mouse_genomes_project 11 114151304 114171342 - MGP_AJ_P0033360 Hid1 protein_coding protein_coding MGP_AJ_T0033361.1 MGP_AJ_G0019351.1 mouse_genomes_project 11 114151304 114171379 - MGP_AJ_P0033361 Hid1 protein_coding protein_coding MGP_AJ_T0033362.1 MGP_AJ_G0019351.1 mouse_genomes_project 11 114152606 114154644 - Hid1 protein_coding processed_transcript MGP_AJ_T0033363.1 MGP_AJ_G0019351.1 mouse_genomes_project 11 114157753 114159015 - Hid1 protein_coding processed_transcript MGP_AJ_T0033364.1 MGP_AJ_G0019351.1 mouse_genomes_project 11 114159000 114171290 - MGP_AJ_P0033364 Hid1 protein_coding protein_coding MGP_AJ_T0033365.1 MGP_AJ_G0019351.1 mouse_genomes_project 11 114160329 114163942 - Hid1 protein_coding processed_transcript MGP_AJ_T0033366.1 MGP_AJ_G0019351.1 mouse_genomes_project 11 114160424 114171232 - Hid1 protein_coding processed_transcript MGP_AJ_T0033367.1 MGP_AJ_G0019351.1 mouse_genomes_project 11 114162304 114162945 - Hid1 protein_coding processed_transcript MGP_AJ_T0030663.1 MGP_AJ_G0018682.1 mouse_genomes_project 11 73430071 73443679 + MGP_AJ_P0030663 Scarf1 protein_coding protein_coding MGP_AJ_T0030664.1 MGP_AJ_G0018682.1 mouse_genomes_project 11 73430106 73443675 + MGP_AJ_P0030664 Scarf1 protein_coding nonsense_mediated_decay MGP_AJ_T0030665.1 MGP_AJ_G0018682.1 mouse_genomes_project 11 73430109 73445579 + MGP_AJ_P0030665 Scarf1 protein_coding protein_coding MGP_AJ_T0009703.1 MGP_AJ_G0007825.1 mouse_genomes_project 11 68066546 68066671 - Mir497b miRNA miRNA MGP_AJ_T0029543.1 MGP_AJ_G0018415.1 mouse_genomes_project 11 59431370 59466975 - MGP_AJ_P0029543 Prpsap2 protein_coding protein_coding MGP_AJ_T0029544.1 MGP_AJ_G0018415.1 mouse_genomes_project 11 59432041 59467004 - MGP_AJ_P0029544 Prpsap2 protein_coding unknown_likely_coding MGP_AJ_T0029545.1 MGP_AJ_G0018415.1 mouse_genomes_project 11 59460340 59466953 - Prpsap2 protein_coding processed_transcript MGP_AJ_T0033696.1 MGP_AJ_G0019410.1 mouse_genomes_project 11 115675271 115678457 - MGP_AJ_P0033696 Srsf2 protein_coding protein_coding MGP_AJ_T0033697.1 MGP_AJ_G0019410.1 mouse_genomes_project 11 115675274 115677582 - Srsf2 protein_coding retained_intron MGP_AJ_T0033698.1 MGP_AJ_G0019410.1 mouse_genomes_project 11 115675276 115677449 - MGP_AJ_P0033698 Srsf2 protein_coding nonsense_mediated_decay MGP_AJ_T0033699.1 MGP_AJ_G0019410.1 mouse_genomes_project 11 115675414 115678435 - MGP_AJ_P0033699 Srsf2 protein_coding nonsense_mediated_decay MGP_AJ_T0033700.1 MGP_AJ_G0019410.1 mouse_genomes_project 11 115675422 115678435 - MGP_AJ_P0033700 Srsf2 protein_coding protein_coding MGP_AJ_T0033701.1 MGP_AJ_G0019410.1 mouse_genomes_project 11 115675476 115676934 - Srsf2 protein_coding processed_transcript MGP_AJ_T0028238.1 MGP_AJ_G0018061.1 mouse_genomes_project 11 20448189 20451933 - MGP_AJ_P0028238 1700093K21Rik protein_coding protein_coding MGP_AJ_T0028239.1 MGP_AJ_G0018061.1 mouse_genomes_project 11 20448189 20451214 - MGP_AJ_P0028239 1700093K21Rik protein_coding protein_coding MGP_AJ_T0028240.1 MGP_AJ_G0018061.1 mouse_genomes_project 11 20450778 20451933 - MGP_AJ_P0028240 1700093K21Rik protein_coding protein_coding MGP_AJ_T0028241.1 MGP_AJ_G0018061.1 mouse_genomes_project 11 20450807 20453146 - MGP_AJ_P0028241 1700093K21Rik protein_coding protein_coding MGP_AJ_T0101945.1 MGP_AJ_G0039790.1 mouse_genomes_project 11 69096708 69140576 - transcribed_unprocessed_pseudogene processed_transcript MGP_AJ_T0101946.1 MGP_AJ_G0039790.1 mouse_genomes_project 11 69096708 69136563 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_AJ_T0028761.1 MGP_AJ_G0018200.1 mouse_genomes_project 11 46692201 46699861 + MGP_AJ_P0028761 Olfr1385 protein_coding protein_coding MGP_AJ_T0029038.1 MGP_AJ_G0018273.1 mouse_genomes_project 11 51176179 51183488 + MGP_AJ_P0029038 Irf1 protein_coding protein_coding MGP_AJ_T0029039.1 MGP_AJ_G0018273.1 mouse_genomes_project 11 51176213 51181268 + MGP_AJ_P0029039 Irf1 protein_coding protein_coding MGP_AJ_T0029040.1 MGP_AJ_G0018273.1 mouse_genomes_project 11 51176216 51184539 + MGP_AJ_P0029040 Irf1 protein_coding protein_coding MGP_AJ_T0029041.1 MGP_AJ_G0018273.1 mouse_genomes_project 11 51176236 51182543 + Irf1 protein_coding processed_transcript MGP_AJ_T0029042.1 MGP_AJ_G0018273.1 mouse_genomes_project 11 51176270 51180250 + MGP_AJ_P0029042 Irf1 protein_coding nonsense_mediated_decay MGP_AJ_T0029043.1 MGP_AJ_G0018273.1 mouse_genomes_project 11 51176641 51179103 + MGP_AJ_P0029043 Irf1 protein_coding protein_coding MGP_AJ_T0029044.1 MGP_AJ_G0018273.1 mouse_genomes_project 11 51176651 51180359 + MGP_AJ_P0029044 Irf1 protein_coding protein_coding MGP_AJ_T0029045.1 MGP_AJ_G0018273.1 mouse_genomes_project 11 51176659 51183488 + MGP_AJ_P0029045 Irf1 protein_coding protein_coding MGP_AJ_T0029046.1 MGP_AJ_G0018273.1 mouse_genomes_project 11 51176673 51180122 + MGP_AJ_P0029046 Irf1 protein_coding protein_coding MGP_AJ_T0029048.1 MGP_AJ_G0018273.1 mouse_genomes_project 11 51179317 51180295 + Irf1 protein_coding retained_intron MGP_AJ_T0031620.1 MGP_AJ_G0018914.1 mouse_genomes_project 11 92180364 92186718 - MGP_AJ_P0031620 Nme2 protein_coding protein_coding MGP_AJ_T0031621.1 MGP_AJ_G0018914.1 mouse_genomes_project 11 92180367 92186242 - MGP_AJ_P0031621 Nme2 protein_coding protein_coding MGP_AJ_T0003259.1 MGP_AJ_G0003012.1 mouse_genomes_project 11 87291321 87295656 + Dgkeos antisense antisense MGP_AJ_T0003260.1 MGP_AJ_G0003012.1 mouse_genomes_project 11 87292658 87295656 + Dgkeos antisense antisense MGP_AJ_T0003261.1 MGP_AJ_G0003012.1 mouse_genomes_project 11 87292832 87294441 + Dgkeos antisense antisense MGP_AJ_T0003262.1 MGP_AJ_G0003012.1 mouse_genomes_project 11 87292836 87294441 + Dgkeos antisense antisense MGP_AJ_T0027999.1 MGP_AJ_G0018003.1 mouse_genomes_project 11 3637743 3656534 + MGP_AJ_P0027999 Ramp3 protein_coding protein_coding MGP_AJ_T0028000.1 MGP_AJ_G0018003.1 mouse_genomes_project 11 3637787 3656531 + Ramp3 protein_coding processed_transcript MGP_AJ_T0003147.1 MGP_AJ_G0002919.1 mouse_genomes_project 11 41844669 41847823 - Gm12158 antisense antisense MGP_AJ_T0029989.1 MGP_AJ_G0018515.1 mouse_genomes_project 11 67489146 67498794 - MGP_AJ_P0029989 Senp3 protein_coding protein_coding MGP_AJ_T0029990.1 MGP_AJ_G0018515.1 mouse_genomes_project 11 67489147 67491006 - Senp3 protein_coding retained_intron MGP_AJ_T0029991.1 MGP_AJ_G0018515.1 mouse_genomes_project 11 67489152 67499032 - MGP_AJ_P0029991 Senp3 protein_coding protein_coding MGP_AJ_T0029992.1 MGP_AJ_G0018515.1 mouse_genomes_project 11 67489306 67494118 - Senp3 protein_coding retained_intron MGP_AJ_T0029993.1 MGP_AJ_G0018515.1 mouse_genomes_project 11 67489372 67494686 - MGP_AJ_P0029993 Senp3 protein_coding protein_coding MGP_AJ_T0029994.1 MGP_AJ_G0018515.1 mouse_genomes_project 11 67489983 67490474 - Senp3 protein_coding retained_intron MGP_AJ_T0029995.1 MGP_AJ_G0018515.1 mouse_genomes_project 11 67490263 67492977 - Senp3 protein_coding processed_transcript MGP_AJ_T0029996.1 MGP_AJ_G0018515.1 mouse_genomes_project 11 67493077 67494012 - Senp3 protein_coding retained_intron MGP_AJ_T0029997.1 MGP_AJ_G0018515.1 mouse_genomes_project 11 67494155 67495194 - Senp3 protein_coding retained_intron MGP_AJ_T0028015.1 MGP_AJ_G0018010.1 mouse_genomes_project 11 5964989 5983773 - MGP_AJ_P0028015 Hus1 protein_coding nonsense_mediated_decay MGP_AJ_T0028016.1 MGP_AJ_G0018010.1 mouse_genomes_project 11 5964989 5983804 - MGP_AJ_P0028016 Hus1 protein_coding protein_coding MGP_AJ_T0028017.1 MGP_AJ_G0018010.1 mouse_genomes_project 11 5967208 5983741 - Hus1 protein_coding retained_intron MGP_AJ_T0028018.1 MGP_AJ_G0018010.1 mouse_genomes_project 11 5969192 5983777 - Hus1 protein_coding retained_intron MGP_AJ_T0028019.1 MGP_AJ_G0018010.1 mouse_genomes_project 11 5970593 5983295 - Hus1 protein_coding retained_intron MGP_AJ_T0028020.1 MGP_AJ_G0018010.1 mouse_genomes_project 11 5978588 5983741 - Hus1 protein_coding processed_transcript MGP_AJ_T0003255.1 MGP_AJ_G0003008.1 mouse_genomes_project 11 86213940 86252686 - Gm11508 antisense antisense MGP_AJ_T0032291.1 MGP_AJ_G0019122.1 mouse_genomes_project 11 98863491 98873981 + MGP_AJ_P0032291 Fkbp10 protein_coding protein_coding MGP_AJ_T0032292.1 MGP_AJ_G0019122.1 mouse_genomes_project 11 98863560 98873269 + MGP_AJ_P0032292 Fkbp10 protein_coding protein_coding MGP_AJ_T0032293.1 MGP_AJ_G0019122.1 mouse_genomes_project 11 98863639 98871246 + MGP_AJ_P0032293 Fkbp10 protein_coding nonsense_mediated_decay MGP_AJ_T0032294.1 MGP_AJ_G0019122.1 mouse_genomes_project 11 98869580 98870853 + Fkbp10 protein_coding retained_intron MGP_AJ_T0032297.1 MGP_AJ_G0019122.1 mouse_genomes_project 11 98872194 98873457 + Fkbp10 protein_coding retained_intron MGP_AJ_T0028045.1 MGP_AJ_G0018018.1 mouse_genomes_project 11 8658285 8682032 + MGP_AJ_P0028045 Ikzf1 protein_coding protein_coding MGP_AJ_T0028046.1 MGP_AJ_G0018018.1 mouse_genomes_project 11 8658285 8729065 + MGP_AJ_P0028046 Ikzf1 protein_coding protein_coding MGP_AJ_T0028047.1 MGP_AJ_G0018018.1 mouse_genomes_project 11 8659207 8747401 + MGP_AJ_P0028047 Ikzf1 protein_coding protein_coding MGP_AJ_T0028048.1 MGP_AJ_G0018018.1 mouse_genomes_project 11 8659495 8748215 + MGP_AJ_P0028048 Ikzf1 protein_coding protein_coding MGP_AJ_T0028049.1 MGP_AJ_G0018018.1 mouse_genomes_project 11 8659511 8736529 + MGP_AJ_P0028049 Ikzf1 protein_coding protein_coding MGP_AJ_T0028050.1 MGP_AJ_G0018018.1 mouse_genomes_project 11 8659727 8745087 + MGP_AJ_P0028050 Ikzf1 protein_coding protein_coding MGP_AJ_T0028641.1 MGP_AJ_G0018160.1 mouse_genomes_project 11 43229504 43321635 + MGP_AJ_P0028641 Adam19 protein_coding protein_coding MGP_AJ_T0028642.1 MGP_AJ_G0018160.1 mouse_genomes_project 11 43229570 43238585 + Adam19 protein_coding processed_transcript MGP_AJ_T0028643.1 MGP_AJ_G0018160.1 mouse_genomes_project 11 43302269 43318152 + Adam19 protein_coding processed_transcript MGP_AJ_T0028644.1 MGP_AJ_G0018160.1 mouse_genomes_project 11 43308474 43311935 + Adam19 protein_coding retained_intron MGP_AJ_T0017203.1 MGP_AJ_G0015153.1 mouse_genomes_project 11 64756397 64765790 + Gm12299 processed_transcript processed_transcript MGP_AJ_T0003367.1 MGP_AJ_G0003098.1 mouse_genomes_project 11 119742687 119745903 + Gm11773 antisense antisense MGP_AJ_T0029425.1 MGP_AJ_G0018392.1 mouse_genomes_project 11 58411386 58415948 + MGP_AJ_P0029425 Mief2 protein_coding protein_coding MGP_AJ_T0029426.1 MGP_AJ_G0018392.1 mouse_genomes_project 11 58411431 58413997 + Mief2 protein_coding retained_intron MGP_AJ_T0029427.1 MGP_AJ_G0018392.1 mouse_genomes_project 11 58411433 58413651 + Mief2 protein_coding processed_transcript MGP_AJ_T0031533.1 MGP_AJ_G0018891.1 mouse_genomes_project 11 86504232 86505434 + MGP_AJ_P0031533 Ccdc182 protein_coding protein_coding MGP_AJ_T0012632.1 MGP_AJ_G0010727.1 mouse_genomes_project 11 57050566 57050871 + processed_pseudogene processed_pseudogene MGP_AJ_T0003118.1 MGP_AJ_G0002895.1 mouse_genomes_project 11 4163097 4166235 - antisense antisense MGP_AJ_T0028363.1 MGP_AJ_G0018086.1 mouse_genomes_project 11 27087277 27255266 - MGP_AJ_P0028363 Sptbn1 protein_coding protein_coding MGP_AJ_T0028364.1 MGP_AJ_G0018086.1 mouse_genomes_project 11 27087278 27091132 - Sptbn1 protein_coding retained_intron MGP_AJ_T0028365.1 MGP_AJ_G0018086.1 mouse_genomes_project 11 27087278 27207359 - MGP_AJ_P0028365 Sptbn1 protein_coding protein_coding MGP_AJ_T0028366.1 MGP_AJ_G0018086.1 mouse_genomes_project 11 27089395 27093493 - Sptbn1 protein_coding retained_intron MGP_AJ_T0028367.1 MGP_AJ_G0018086.1 mouse_genomes_project 11 27094667 27185943 - MGP_AJ_P0028367 Sptbn1 protein_coding protein_coding MGP_AJ_T0028368.1 MGP_AJ_G0018086.1 mouse_genomes_project 11 27097753 27099242 - Sptbn1 protein_coding retained_intron MGP_AJ_T0028369.1 MGP_AJ_G0018086.1 mouse_genomes_project 11 27097830 27254311 - MGP_AJ_P0028369 Sptbn1 protein_coding protein_coding MGP_AJ_T0028370.1 MGP_AJ_G0018086.1 mouse_genomes_project 11 27204246 27255272 - Sptbn1 protein_coding retained_intron MGP_AJ_T0033944.1 MGP_AJ_G0019459.1 mouse_genomes_project 11 119002311 119004089 + MGP_AJ_P0033944 1810043H04Rik protein_coding protein_coding MGP_AJ_T0033945.1 MGP_AJ_G0019459.1 mouse_genomes_project 11 119002327 119003747 + MGP_AJ_P0033945 1810043H04Rik protein_coding protein_coding MGP_AJ_T0033946.1 MGP_AJ_G0019459.1 mouse_genomes_project 11 119002482 119003798 + 1810043H04Rik protein_coding retained_intron MGP_AJ_T0003268.1 MGP_AJ_G0003018.1 mouse_genomes_project 11 93969515 93983557 - Zfp652os antisense antisense MGP_AJ_T0031234.1 MGP_AJ_G0018819.1 mouse_genomes_project 11 81635596 81640343 - MGP_AJ_P0031234 Ccl5 protein_coding protein_coding MGP_AJ_T0031235.1 MGP_AJ_G0018819.1 mouse_genomes_project 11 81638556 81640338 - Ccl5 protein_coding retained_intron MGP_AJ_T0029881.1 MGP_AJ_G0018489.1 mouse_genomes_project 11 66911869 66915463 + MGP_AJ_P0029881 Hes7 protein_coding protein_coding MGP_AJ_T0017168.1 MGP_AJ_G0015132.1 mouse_genomes_project 11 19782671 19785004 + 9130230N09Rik processed_transcript processed_transcript MGP_AJ_T0027963.1 MGP_AJ_G0017996.1 mouse_genomes_project 11 3393552 3413191 - MGP_AJ_P0027963 H2afv protein_coding protein_coding MGP_AJ_T0027964.1 MGP_AJ_G0017996.1 mouse_genomes_project 11 3394461 3413100 - MGP_AJ_P0027964 H2afv protein_coding protein_coding MGP_AJ_T0031122.1 MGP_AJ_G0018781.1 mouse_genomes_project 11 78507045 78511207 + MGP_AJ_P0031122 Cdk5r1 protein_coding protein_coding MGP_AJ_T0031123.1 MGP_AJ_G0018781.1 mouse_genomes_project 11 78507078 78507946 + MGP_AJ_P0031123 Cdk5r1 protein_coding protein_coding MGP_AJ_T0030938.1 MGP_AJ_G0018737.1 mouse_genomes_project 11 76207493 76218259 + MGP_AJ_P0030938 Sdf2 protein_coding protein_coding MGP_AJ_T0030939.1 MGP_AJ_G0018737.1 mouse_genomes_project 11 76213191 76218259 + Sdf2 protein_coding processed_transcript MGP_AJ_T0030940.1 MGP_AJ_G0018737.1 mouse_genomes_project 11 76213664 76217880 + Sdf2 protein_coding retained_intron MGP_AJ_T0099356.1 MGP_AJ_G0037322.1 mouse_genomes_project 11 85490541 85490647 - Gm22883 snRNA snRNA MGP_AJ_T0012524.1 MGP_AJ_G0010619.1 mouse_genomes_project 11 18606561 18607207 - processed_pseudogene processed_pseudogene MGP_AJ_T0032142.1 MGP_AJ_G0019042.1 mouse_genomes_project 11 97161937 97190816 + MGP_AJ_P0032142 Casc3 protein_coding protein_coding MGP_AJ_T0032143.1 MGP_AJ_G0019042.1 mouse_genomes_project 11 97166843 97190808 + MGP_AJ_P0032143 Casc3 protein_coding protein_coding MGP_AJ_T0032144.1 MGP_AJ_G0019042.1 mouse_genomes_project 11 97167185 97167964 + Casc3 protein_coding processed_transcript MGP_AJ_T0032145.1 MGP_AJ_G0019042.1 mouse_genomes_project 11 97167196 97179505 + Casc3 protein_coding processed_transcript MGP_AJ_T0029653.1 MGP_AJ_G0018434.1 mouse_genomes_project 11 60629893 60645460 + MGP_AJ_P0029653 Tvp23b protein_coding protein_coding MGP_AJ_T0029654.1 MGP_AJ_G0018434.1 mouse_genomes_project 11 60629928 60642322 + Tvp23b protein_coding processed_transcript MGP_AJ_T0029655.1 MGP_AJ_G0018434.1 mouse_genomes_project 11 60630052 60635626 + Tvp23b protein_coding processed_transcript MGP_AJ_T0029656.1 MGP_AJ_G0018434.1 mouse_genomes_project 11 60634087 60666360 + Tvp23b protein_coding processed_transcript MGP_AJ_T0027637.1 MGP_AJ_G0017927.1 mouse_genomes_project 11 202098 203252 + Patz1 protein_coding processed_transcript MGP_AJ_T0027638.1 MGP_AJ_G0017927.1 mouse_genomes_project 11 202391 222094 + Patz1 protein_coding processed_transcript MGP_AJ_T0027639.1 MGP_AJ_G0017927.1 mouse_genomes_project 11 202426 208122 + Patz1 protein_coding processed_transcript MGP_AJ_T0027640.1 MGP_AJ_G0017927.1 mouse_genomes_project 11 202475 222101 + MGP_AJ_P0027640 Patz1 protein_coding unknown_likely_coding MGP_AJ_T0027641.1 MGP_AJ_G0017927.1 mouse_genomes_project 11 202505 222094 + MGP_AJ_P0027641 Patz1 protein_coding protein_coding MGP_AJ_T0027642.1 MGP_AJ_G0017927.1 mouse_genomes_project 11 203060 208462 + MGP_AJ_P0027642 Patz1 protein_coding protein_coding MGP_AJ_T0027643.1 MGP_AJ_G0017927.1 mouse_genomes_project 11 203060 222094 + MGP_AJ_P0027643 Patz1 protein_coding protein_coding MGP_AJ_T0027644.1 MGP_AJ_G0017927.1 mouse_genomes_project 11 203481 222094 + MGP_AJ_P0027644 Patz1 protein_coding protein_coding MGP_AJ_T0027645.1 MGP_AJ_G0017927.1 mouse_genomes_project 11 204483 221153 + Patz1 protein_coding processed_transcript MGP_AJ_T0027646.1 MGP_AJ_G0017927.1 mouse_genomes_project 11 205219 207701 + Patz1 protein_coding processed_transcript MGP_AJ_T0027647.1 MGP_AJ_G0017927.1 mouse_genomes_project 11 205892 207928 + Patz1 protein_coding processed_transcript MGP_AJ_T0027648.1 MGP_AJ_G0017927.1 mouse_genomes_project 11 211316 220678 + MGP_AJ_P0027648 Patz1 protein_coding protein_coding MGP_AJ_T0009754.1 MGP_AJ_G0007876.1 mouse_genomes_project 11 101545656 101545730 - Mir6931 miRNA miRNA MGP_AJ_T0027852.1 MGP_AJ_G0017970.1 mouse_genomes_project 11 2058887 2066050 + MGP_AJ_P0027852 Rhbdd3 protein_coding protein_coding MGP_AJ_T0027853.1 MGP_AJ_G0017970.1 mouse_genomes_project 11 2059038 2060549 + Rhbdd3 protein_coding processed_transcript MGP_AJ_T0027854.1 MGP_AJ_G0017970.1 mouse_genomes_project 11 2059234 2060469 + Rhbdd3 protein_coding processed_transcript MGP_AJ_T0027855.1 MGP_AJ_G0017970.1 mouse_genomes_project 11 2059394 2063308 + MGP_AJ_P0027855 Rhbdd3 protein_coding protein_coding MGP_AJ_T0027856.1 MGP_AJ_G0017970.1 mouse_genomes_project 11 2059400 2066050 + MGP_AJ_P0027856 Rhbdd3 protein_coding protein_coding MGP_AJ_T0027857.1 MGP_AJ_G0017970.1 mouse_genomes_project 11 2059437 2063213 + MGP_AJ_P0027857 Rhbdd3 protein_coding protein_coding MGP_AJ_T0027858.1 MGP_AJ_G0017970.1 mouse_genomes_project 11 2059569 2063219 + MGP_AJ_P0027858 Rhbdd3 protein_coding protein_coding MGP_AJ_T0027859.1 MGP_AJ_G0017970.1 mouse_genomes_project 11 2060118 2066050 + MGP_AJ_P0027859 Rhbdd3 protein_coding protein_coding MGP_AJ_T0027860.1 MGP_AJ_G0017970.1 mouse_genomes_project 11 2060131 2065187 + MGP_AJ_P0027860 Rhbdd3 protein_coding protein_coding MGP_AJ_T0027861.1 MGP_AJ_G0017970.1 mouse_genomes_project 11 2060198 2066052 + Rhbdd3 protein_coding processed_transcript MGP_AJ_T0029301.1 MGP_AJ_G0018365.1 mouse_genomes_project 11 56936047 56939141 - MGP_AJ_P0029301 Prss38 protein_coding protein_coding MGP_AJ_T0099350.1 MGP_AJ_G0037316.1 mouse_genomes_project 11 80637062 80637169 - Gm24612 snRNA snRNA MGP_AJ_T0017190.1 MGP_AJ_G0015146.1 mouse_genomes_project 11 55811652 55813104 + 1700047K16Rik processed_transcript processed_transcript MGP_AJ_T0028856.1 MGP_AJ_G0018221.1 mouse_genomes_project 11 48116465 48124770 - MGP_AJ_P0028856 Zfp879 protein_coding protein_coding MGP_AJ_T0030907.1 MGP_AJ_G0018731.1 mouse_genomes_project 11 76124896 76135398 - Nek8 protein_coding retained_intron MGP_AJ_T0030908.1 MGP_AJ_G0018731.1 mouse_genomes_project 11 76124896 76135462 - MGP_AJ_P0030908 Nek8 protein_coding protein_coding MGP_AJ_T0030909.1 MGP_AJ_G0018731.1 mouse_genomes_project 11 76124900 76126178 - Nek8 protein_coding retained_intron MGP_AJ_T0030910.1 MGP_AJ_G0018731.1 mouse_genomes_project 11 76125311 76135414 - Nek8 protein_coding retained_intron MGP_AJ_T0030911.1 MGP_AJ_G0018731.1 mouse_genomes_project 11 76126044 76126824 - Nek8 protein_coding retained_intron MGP_AJ_T0030912.1 MGP_AJ_G0018731.1 mouse_genomes_project 11 76127762 76128619 - Nek8 protein_coding retained_intron MGP_AJ_T0030913.1 MGP_AJ_G0018731.1 mouse_genomes_project 11 76128781 76135401 - Nek8 protein_coding retained_intron MGP_AJ_T0030914.1 MGP_AJ_G0018731.1 mouse_genomes_project 11 76129977 76135421 - MGP_AJ_P0030914 Nek8 protein_coding protein_coding MGP_AJ_T0099320.1 MGP_AJ_G0037286.1 mouse_genomes_project 11 26332050 26332176 + Gm23109 snRNA snRNA MGP_AJ_T0033797.1 MGP_AJ_G0019431.1 mouse_genomes_project 11 117144031 117150432 - Usp36 protein_coding retained_intron MGP_AJ_T0033798.1 MGP_AJ_G0019431.1 mouse_genomes_project 11 117144032 117175484 - MGP_AJ_P0033798 Usp36 protein_coding protein_coding MGP_AJ_T0033799.1 MGP_AJ_G0019431.1 mouse_genomes_project 11 117145249 117147669 - Usp36 protein_coding retained_intron MGP_AJ_T0033800.1 MGP_AJ_G0019431.1 mouse_genomes_project 11 117169069 117175459 - Usp36 protein_coding retained_intron MGP_AJ_T0032247.1 MGP_AJ_G0019104.1 mouse_genomes_project 11 98443564 98447960 - MGP_AJ_P0032247 Krt34 protein_coding protein_coding MGP_AJ_T0006196.1 MGP_AJ_G0005175.1 mouse_genomes_project 11 21417940 21501689 + 4933430M04Rik lincRNA lincRNA MGP_AJ_T0032242.1 MGP_AJ_G0019099.1 mouse_genomes_project 11 98379781 98380813 - MGP_AJ_P0032242 Krtap29-1 protein_coding protein_coding MGP_AJ_T0033987.1 MGP_AJ_G0019467.1 mouse_genomes_project 11 119350921 119355228 + MGP_AJ_P0033987 Tspan10 protein_coding protein_coding MGP_AJ_T0033988.1 MGP_AJ_G0019467.1 mouse_genomes_project 11 119350948 119352583 + Tspan10 protein_coding processed_transcript MGP_AJ_T0017157.1 MGP_AJ_G0015128.1 mouse_genomes_project 11 13835171 13851896 - Eldr processed_transcript processed_transcript MGP_AJ_T0017158.1 MGP_AJ_G0015128.1 mouse_genomes_project 11 13835176 13851915 - Eldr processed_transcript processed_transcript MGP_AJ_T0017159.1 MGP_AJ_G0015128.1 mouse_genomes_project 11 13835339 13851839 - Eldr processed_transcript processed_transcript MGP_AJ_T0017160.1 MGP_AJ_G0015128.1 mouse_genomes_project 11 13835603 13851897 - Eldr processed_transcript processed_transcript MGP_AJ_T0017161.1 MGP_AJ_G0015128.1 mouse_genomes_project 11 13835646 13852079 - Eldr processed_transcript processed_transcript MGP_AJ_T0017162.1 MGP_AJ_G0015128.1 mouse_genomes_project 11 13835719 13851879 - Eldr processed_transcript processed_transcript MGP_AJ_T0017163.1 MGP_AJ_G0015128.1 mouse_genomes_project 11 13839255 13851890 - Eldr processed_transcript processed_transcript MGP_AJ_T0012628.1 MGP_AJ_G0010723.1 mouse_genomes_project 11 55892502 55892721 - processed_pseudogene processed_pseudogene MGP_AJ_T0032215.1 MGP_AJ_G0019072.1 mouse_genomes_project 11 97968497 97969265 - MGP_AJ_P0032215 Krtap9-3 protein_coding protein_coding MGP_AJ_T0028313.1 MGP_AJ_G0018077.1 mouse_genomes_project 11 26226830 26253735 - MGP_AJ_P0028313 Cfap36 protein_coding protein_coding MGP_AJ_T0028314.1 MGP_AJ_G0018077.1 mouse_genomes_project 11 26231071 26253613 - Cfap36 protein_coding retained_intron MGP_AJ_T0028315.1 MGP_AJ_G0018077.1 mouse_genomes_project 11 26235958 26253247 - MGP_AJ_P0028315 Cfap36 protein_coding protein_coding MGP_AJ_T0028316.1 MGP_AJ_G0018077.1 mouse_genomes_project 11 26250152 26253393 - Cfap36 protein_coding retained_intron MGP_AJ_T0028317.1 MGP_AJ_G0018077.1 mouse_genomes_project 11 26251061 26253517 - Cfap36 protein_coding retained_intron MGP_AJ_T0032517.1 MGP_AJ_G0019172.1 mouse_genomes_project 11 99940572 99947990 - MGP_AJ_P0032517 Vat1 protein_coding protein_coding MGP_AJ_T0011293.1 MGP_AJ_G0009415.1 mouse_genomes_project 11 571821 571909 - Gm27937 misc_RNA misc_RNA MGP_AJ_T0029688.1 MGP_AJ_G0018446.1 mouse_genomes_project 11 63453616 63555650 - MGP_AJ_P0029688 Map2k4 protein_coding protein_coding MGP_AJ_T0029689.1 MGP_AJ_G0018446.1 mouse_genomes_project 11 63455706 63484974 - MGP_AJ_P0029689 Map2k4 protein_coding protein_coding MGP_AJ_T0029690.1 MGP_AJ_G0018446.1 mouse_genomes_project 11 63457101 63462386 - Map2k4 protein_coding processed_transcript MGP_AJ_T0029691.1 MGP_AJ_G0018446.1 mouse_genomes_project 11 63461659 63555638 - MGP_AJ_P0029691 Map2k4 protein_coding nonsense_mediated_decay MGP_AJ_T0029692.1 MGP_AJ_G0018446.1 mouse_genomes_project 11 63477590 63555639 - MGP_AJ_P0029692 Map2k4 protein_coding protein_coding MGP_AJ_T0029693.1 MGP_AJ_G0018446.1 mouse_genomes_project 11 63477591 63555638 - MGP_AJ_P0029693 Map2k4 protein_coding nonsense_mediated_decay MGP_AJ_T0029694.1 MGP_AJ_G0018446.1 mouse_genomes_project 11 63484909 63512846 - Map2k4 protein_coding processed_transcript MGP_AJ_T0012490.1 MGP_AJ_G0010585.1 mouse_genomes_project 11 11697972 11698719 + processed_pseudogene processed_pseudogene MGP_AJ_T0029549.1 MGP_AJ_G0018417.1 mouse_genomes_project 11 59590761 59649715 - MGP_AJ_P0029549 Akap10 protein_coding protein_coding MGP_AJ_T0029550.1 MGP_AJ_G0018417.1 mouse_genomes_project 11 59591126 59597907 - Akap10 protein_coding processed_transcript MGP_AJ_T0029551.1 MGP_AJ_G0018417.1 mouse_genomes_project 11 59592470 59649473 - MGP_AJ_P0029551 Akap10 protein_coding protein_coding MGP_AJ_T0029552.1 MGP_AJ_G0018417.1 mouse_genomes_project 11 59611234 59649689 - MGP_AJ_P0029552 Akap10 protein_coding protein_coding MGP_AJ_T0029553.1 MGP_AJ_G0018417.1 mouse_genomes_project 11 59641360 59649670 - Akap10 protein_coding processed_transcript MGP_AJ_T0032269.1 MGP_AJ_G0019117.1 mouse_genomes_project 11 98762735 98768656 + MGP_AJ_P0032269 Eif1 protein_coding protein_coding MGP_AJ_T0032270.1 MGP_AJ_G0019117.1 mouse_genomes_project 11 98766807 98767588 + MGP_AJ_P0032270 Eif1 protein_coding protein_coding MGP_AJ_T0032271.1 MGP_AJ_G0019117.1 mouse_genomes_project 11 98767116 98767948 + Eif1 protein_coding processed_transcript MGP_AJ_T0032272.1 MGP_AJ_G0019117.1 mouse_genomes_project 11 98767306 98768302 + MGP_AJ_P0032272 Eif1 protein_coding protein_coding MGP_AJ_T0032273.1 MGP_AJ_G0019117.1 mouse_genomes_project 11 98767482 98768086 + Eif1 protein_coding processed_transcript MGP_AJ_T0030159.1 MGP_AJ_G0018552.1 mouse_genomes_project 11 68044606 68048268 + MGP_AJ_P0030159 Slc16a11 protein_coding protein_coding MGP_AJ_T0030160.1 MGP_AJ_G0018552.1 mouse_genomes_project 11 68045764 68048267 + MGP_AJ_P0030160 Slc16a11 protein_coding protein_coding MGP_AJ_T0030161.1 MGP_AJ_G0018552.1 mouse_genomes_project 11 68045853 68046709 + Slc16a11 protein_coding retained_intron MGP_AJ_T0030162.1 MGP_AJ_G0018552.1 mouse_genomes_project 11 68045934 68048268 + MGP_AJ_P0030162 Slc16a11 protein_coding nonsense_mediated_decay MGP_AJ_T0030163.1 MGP_AJ_G0018552.1 mouse_genomes_project 11 68045969 68048269 + MGP_AJ_P0030163 Slc16a11 protein_coding protein_coding MGP_AJ_T0030164.1 MGP_AJ_G0018552.1 mouse_genomes_project 11 68045973 68048272 + MGP_AJ_P0030164 Slc16a11 protein_coding protein_coding MGP_AJ_T0030165.1 MGP_AJ_G0018552.1 mouse_genomes_project 11 68045973 68047387 + MGP_AJ_P0030165 Slc16a11 protein_coding protein_coding MGP_AJ_T0030166.1 MGP_AJ_G0018552.1 mouse_genomes_project 11 68045975 68046842 + MGP_AJ_P0030166 Slc16a11 protein_coding protein_coding MGP_AJ_T0030167.1 MGP_AJ_G0018552.1 mouse_genomes_project 11 68045976 68047530 + Slc16a11 protein_coding processed_transcript MGP_AJ_T0030168.1 MGP_AJ_G0018552.1 mouse_genomes_project 11 68046416 68047335 + Slc16a11 protein_coding retained_intron MGP_AJ_T0030169.1 MGP_AJ_G0018552.1 mouse_genomes_project 11 68046672 68048268 + Slc16a11 protein_coding retained_intron MGP_AJ_T0031835.1 MGP_AJ_G0018971.1 mouse_genomes_project 11 94571483 94574824 + MGP_AJ_P0031835 Hoxb7 protein_coding protein_coding MGP_AJ_T0031836.1 MGP_AJ_G0018971.1 mouse_genomes_project 11 94573582 94574155 + Hoxb7 protein_coding processed_transcript MGP_AJ_T0009733.1 MGP_AJ_G0007855.1 mouse_genomes_project 11 94239375 94239467 - Mir3063 miRNA miRNA MGP_AJ_T0028150.1 MGP_AJ_G0018042.1 mouse_genomes_project 11 17741649 17749128 - MGP_AJ_P0028150 Lgalsl protein_coding protein_coding MGP_AJ_T0028151.1 MGP_AJ_G0018042.1 mouse_genomes_project 11 17744423 17748827 - Lgalsl protein_coding processed_transcript MGP_AJ_T0028152.1 MGP_AJ_G0018042.1 mouse_genomes_project 11 17747383 17749128 - Lgalsl protein_coding processed_transcript MGP_AJ_T0028153.1 MGP_AJ_G0018042.1 mouse_genomes_project 11 17747868 17749094 - Lgalsl protein_coding processed_transcript MGP_AJ_T0003299.1 MGP_AJ_G0003041.1 mouse_genomes_project 11 100078718 100084085 - antisense antisense MGP_AJ_T0031201.1 MGP_AJ_G0018811.1 mouse_genomes_project 11 81402887 81407222 - MGP_AJ_P0031201 Pex12 protein_coding protein_coding MGP_AJ_T0031202.1 MGP_AJ_G0018811.1 mouse_genomes_project 11 81403320 81407140 - MGP_AJ_P0031202 Pex12 protein_coding protein_coding MGP_AJ_T0031203.1 MGP_AJ_G0018811.1 mouse_genomes_project 11 81403320 81407187 - MGP_AJ_P0031203 Pex12 protein_coding protein_coding MGP_AJ_T0031204.1 MGP_AJ_G0018811.1 mouse_genomes_project 11 81403321 81407142 - MGP_AJ_P0031204 Pex12 protein_coding protein_coding MGP_AJ_T0031205.1 MGP_AJ_G0018811.1 mouse_genomes_project 11 81406148 81407183 - Pex12 protein_coding processed_transcript MGP_AJ_T0031206.1 MGP_AJ_G0018811.1 mouse_genomes_project 11 81406274 81410828 - MGP_AJ_P0031206 Pex12 protein_coding protein_coding MGP_AJ_T0031207.1 MGP_AJ_G0018811.1 mouse_genomes_project 11 81406573 81407203 - MGP_AJ_P0031207 Pex12 protein_coding protein_coding MGP_AJ_T0032367.1 MGP_AJ_G0019139.1 mouse_genomes_project 11 99233312 99273909 - MGP_AJ_P0032367 protein_coding protein_coding MGP_AJ_T0032368.1 MGP_AJ_G0019139.1 mouse_genomes_project 11 99233312 99302018 - MGP_AJ_P0032368 protein_coding protein_coding MGP_AJ_T0032369.1 MGP_AJ_G0019139.1 mouse_genomes_project 11 99250146 99301832 - protein_coding processed_transcript MGP_AJ_T0028172.1 MGP_AJ_G0018047.1 mouse_genomes_project 11 18498162 18588148 + MGP_AJ_P0028172 Wdpcp protein_coding protein_coding MGP_AJ_T0028173.1 MGP_AJ_G0018047.1 mouse_genomes_project 11 18498162 18815954 + MGP_AJ_P0028173 Wdpcp protein_coding protein_coding MGP_AJ_T0028174.1 MGP_AJ_G0018047.1 mouse_genomes_project 11 18498232 18623819 + Wdpcp protein_coding processed_transcript MGP_AJ_T0028175.1 MGP_AJ_G0018047.1 mouse_genomes_project 11 18615833 18638068 + Wdpcp protein_coding processed_transcript MGP_AJ_T0028176.1 MGP_AJ_G0018047.1 mouse_genomes_project 11 18621379 18675406 + Wdpcp protein_coding processed_transcript MGP_AJ_T0028177.1 MGP_AJ_G0018047.1 mouse_genomes_project 11 18734435 18738378 + Wdpcp protein_coding processed_transcript MGP_AJ_T0027709.1 MGP_AJ_G0017937.1 mouse_genomes_project 11 819281 828214 - MGP_AJ_P0027709 4921536K21Rik protein_coding protein_coding MGP_AJ_T0029781.1 MGP_AJ_G0018470.1 mouse_genomes_project 11 66279580 66330047 + MGP_AJ_P0029781 Pik3r6 protein_coding protein_coding MGP_AJ_T0029782.1 MGP_AJ_G0018470.1 mouse_genomes_project 11 66279580 66330047 + MGP_AJ_P0029782 Pik3r6 protein_coding protein_coding MGP_AJ_T0029783.1 MGP_AJ_G0018470.1 mouse_genomes_project 11 66279652 66330047 + Pik3r6 protein_coding processed_transcript MGP_AJ_T0029784.1 MGP_AJ_G0018470.1 mouse_genomes_project 11 66313047 66321702 + Pik3r6 protein_coding processed_transcript MGP_AJ_T0029785.1 MGP_AJ_G0018470.1 mouse_genomes_project 11 66329412 66330045 + Pik3r6 protein_coding processed_transcript MGP_AJ_T0029184.1 MGP_AJ_G0018310.1 mouse_genomes_project 11 55423228 55430703 - MGP_AJ_P0029184 Bex4 protein_coding protein_coding MGP_AJ_T0033215.1 MGP_AJ_G0019313.1 mouse_genomes_project 11 109090448 109217932 + MGP_AJ_P0033215 Map2k6 protein_coding protein_coding MGP_AJ_T0033216.1 MGP_AJ_G0019313.1 mouse_genomes_project 11 109090448 109206052 + MGP_AJ_P0033216 Map2k6 protein_coding protein_coding MGP_AJ_T0033217.1 MGP_AJ_G0019313.1 mouse_genomes_project 11 109090585 109206052 + Map2k6 protein_coding processed_transcript MGP_AJ_T0033218.1 MGP_AJ_G0019313.1 mouse_genomes_project 11 109168867 109191931 + Map2k6 protein_coding processed_transcript MGP_AJ_T0033219.1 MGP_AJ_G0019313.1 mouse_genomes_project 11 109171471 109190336 + Map2k6 protein_coding processed_transcript MGP_AJ_T0033220.1 MGP_AJ_G0019313.1 mouse_genomes_project 11 109171616 109205278 + MGP_AJ_P0033220 Map2k6 protein_coding unknown_likely_coding MGP_AJ_T0033221.1 MGP_AJ_G0019313.1 mouse_genomes_project 11 109171622 109205278 + MGP_AJ_P0033221 Map2k6 protein_coding unknown_likely_coding MGP_AJ_T0012596.1 MGP_AJ_G0010691.1 mouse_genomes_project 11 47396471 47397483 - processed_pseudogene processed_pseudogene MGP_AJ_T0012528.1 MGP_AJ_G0010623.1 mouse_genomes_project 11 19546912 19547202 - processed_pseudogene processed_pseudogene MGP_AJ_T0102241.1 MGP_AJ_G0039984.1 mouse_genomes_project 11 71812422 71812463 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0031037.1 MGP_AJ_G0018763.1 mouse_genomes_project 11 77340863 77346364 + Nf1 protein_coding processed_transcript MGP_AJ_T0031038.1 MGP_AJ_G0018763.1 mouse_genomes_project 11 77340962 77585106 + MGP_AJ_P0031038 Nf1 protein_coding protein_coding MGP_AJ_T0031039.1 MGP_AJ_G0018763.1 mouse_genomes_project 11 77340995 77587860 + MGP_AJ_P0031039 Nf1 protein_coding protein_coding MGP_AJ_T0031040.1 MGP_AJ_G0018763.1 mouse_genomes_project 11 77341057 77432869 + Nf1 protein_coding retained_intron MGP_AJ_T0031041.1 MGP_AJ_G0018763.1 mouse_genomes_project 11 77450197 77478409 + Nf1 protein_coding processed_transcript MGP_AJ_T0031042.1 MGP_AJ_G0018763.1 mouse_genomes_project 11 77450197 77478409 + Nf1 protein_coding processed_transcript MGP_AJ_T0031052.1 MGP_AJ_G0018763.1 mouse_genomes_project 11 77542254 77576038 + Nf1 protein_coding retained_intron MGP_AJ_T0031053.1 MGP_AJ_G0018763.1 mouse_genomes_project 11 77551945 77586212 + MGP_AJ_P0031053 Nf1 protein_coding protein_coding MGP_AJ_T0034027.1 MGP_AJ_G0019475.1 mouse_genomes_project 11 119438958 119447244 + MGP_AJ_P0034027 Gcgr protein_coding protein_coding MGP_AJ_T0034028.1 MGP_AJ_G0019475.1 mouse_genomes_project 11 119439003 119447246 + Gcgr protein_coding processed_transcript MGP_AJ_T0034029.1 MGP_AJ_G0019475.1 mouse_genomes_project 11 119439033 119447243 + Gcgr protein_coding processed_transcript MGP_AJ_T0034030.1 MGP_AJ_G0019475.1 mouse_genomes_project 11 119442939 119444969 + Gcgr protein_coding processed_transcript MGP_AJ_T0032466.1 MGP_AJ_G0019160.1 mouse_genomes_project 11 99746003 99753507 + Cntd1 protein_coding processed_transcript MGP_AJ_T0032467.1 MGP_AJ_G0019160.1 mouse_genomes_project 11 99746087 99755663 + MGP_AJ_P0032467 Cntd1 protein_coding protein_coding MGP_AJ_T0032468.1 MGP_AJ_G0019160.1 mouse_genomes_project 11 99753016 99763279 + Cntd1 protein_coding processed_transcript MGP_AJ_T0012517.1 MGP_AJ_G0010612.1 mouse_genomes_project 11 18153652 18154254 + processed_pseudogene processed_pseudogene MGP_AJ_T0028994.1 MGP_AJ_G0018259.1 mouse_genomes_project 11 50823057 50824047 - MGP_AJ_P0028994 Leap2 protein_coding protein_coding MGP_AJ_T0031823.1 MGP_AJ_G0018964.1 mouse_genomes_project 11 94327256 94344794 - MGP_AJ_P0031823 Ube2z protein_coding protein_coding MGP_AJ_T0099120.1 MGP_AJ_G0037090.1 mouse_genomes_project 11 96632609 96634655 + Gm20644 sense_overlapping sense_overlapping MGP_AJ_T0032203.1 MGP_AJ_G0019062.1 mouse_genomes_project 11 97846458 97861534 - MGP_AJ_P0032203 Krt23 protein_coding protein_coding MGP_AJ_T0032146.1 MGP_AJ_G0019043.1 mouse_genomes_project 11 97193763 97210602 + MGP_AJ_P0032146 Rapgefl1 protein_coding protein_coding MGP_AJ_T0032147.1 MGP_AJ_G0019043.1 mouse_genomes_project 11 97201988 97204258 + Rapgefl1 protein_coding retained_intron MGP_AJ_T0032148.1 MGP_AJ_G0019043.1 mouse_genomes_project 11 97207234 97209904 + Rapgefl1 protein_coding retained_intron MGP_AJ_T0028847.1 MGP_AJ_G0018219.1 mouse_genomes_project 11 47885812 48091639 + MGP_AJ_P0028847 Adamts2 protein_coding protein_coding MGP_AJ_T0028848.1 MGP_AJ_G0018219.1 mouse_genomes_project 11 47886534 48080727 + MGP_AJ_P0028848 Adamts2 protein_coding unknown_likely_coding MGP_AJ_T0028849.1 MGP_AJ_G0018219.1 mouse_genomes_project 11 48060461 48061298 + Adamts2 protein_coding processed_transcript MGP_AJ_T0028850.1 MGP_AJ_G0018219.1 mouse_genomes_project 11 48065891 48066920 + Adamts2 protein_coding processed_transcript MGP_AJ_T0028851.1 MGP_AJ_G0018219.1 mouse_genomes_project 11 48079508 48082438 + Adamts2 protein_coding processed_transcript MGP_AJ_T0012520.1 MGP_AJ_G0010615.1 mouse_genomes_project 11 18379986 18380199 - processed_pseudogene processed_pseudogene MGP_AJ_T0032344.1 MGP_AJ_G0019132.1 mouse_genomes_project 11 99145735 99154928 - MGP_AJ_P0032344 Dhx58 protein_coding protein_coding MGP_AJ_T0032345.1 MGP_AJ_G0019132.1 mouse_genomes_project 11 99145914 99147475 - Dhx58 protein_coding processed_transcript MGP_AJ_T0032346.1 MGP_AJ_G0019132.1 mouse_genomes_project 11 99146104 99150081 - Dhx58 protein_coding processed_transcript MGP_AJ_T0032347.1 MGP_AJ_G0019132.1 mouse_genomes_project 11 99152042 99154910 - Dhx58 protein_coding processed_transcript MGP_AJ_T0032348.1 MGP_AJ_G0019132.1 mouse_genomes_project 11 99152796 99154004 - Dhx58 protein_coding processed_transcript MGP_AJ_T0032349.1 MGP_AJ_G0019132.1 mouse_genomes_project 11 99153416 99154928 - Dhx58 protein_coding processed_transcript MGP_AJ_T0017252.1 MGP_AJ_G0015180.1 mouse_genomes_project 11 96697399 96704964 - 1700003D09Rik processed_transcript processed_transcript MGP_AJ_T0012744.1 MGP_AJ_G0010839.1 mouse_genomes_project 11 99773737 99774376 + processed_pseudogene processed_pseudogene MGP_AJ_T0003335.1 MGP_AJ_G0003072.1 mouse_genomes_project 11 108445474 108447564 + Gm11684 antisense antisense MGP_AJ_T0012681.1 MGP_AJ_G0010776.1 mouse_genomes_project 11 75048888 75049217 - processed_pseudogene processed_pseudogene MGP_AJ_T0098545.1 MGP_AJ_G0036529.1 mouse_genomes_project 11 84577342 84577462 + Gm23667 rRNA rRNA MGP_AJ_T0017264.1 MGP_AJ_G0015191.1 mouse_genomes_project 11 106447927 106450045 + Gm11650 processed_transcript processed_transcript MGP_AJ_T0003137.1 MGP_AJ_G0002909.1 mouse_genomes_project 11 27094276 27096003 + Gm29237 antisense antisense MGP_AJ_T0032217.1 MGP_AJ_G0019074.1 mouse_genomes_project 11 97984836 97986753 - MGP_AJ_P0032217 protein_coding protein_coding MGP_AJ_T0099383.1 MGP_AJ_G0037349.1 mouse_genomes_project 11 108171185 108171296 - Gm22378 snRNA snRNA MGP_AJ_T0031975.1 MGP_AJ_G0019004.1 mouse_genomes_project 11 96010880 96022666 - MGP_AJ_P0031975 Pcgf2 protein_coding protein_coding MGP_AJ_T0031976.1 MGP_AJ_G0019004.1 mouse_genomes_project 11 96010880 96022462 - MGP_AJ_P0031976 Pcgf2 protein_coding protein_coding MGP_AJ_T0031977.1 MGP_AJ_G0019004.1 mouse_genomes_project 11 96011908 96023717 - MGP_AJ_P0031977 Pcgf2 protein_coding protein_coding MGP_AJ_T0031978.1 MGP_AJ_G0019004.1 mouse_genomes_project 11 96011908 96022666 - MGP_AJ_P0031978 Pcgf2 protein_coding protein_coding MGP_AJ_T0031979.1 MGP_AJ_G0019004.1 mouse_genomes_project 11 96012075 96016098 - MGP_AJ_P0031979 Pcgf2 protein_coding protein_coding MGP_AJ_T0031980.1 MGP_AJ_G0019004.1 mouse_genomes_project 11 96012616 96014506 - Pcgf2 protein_coding processed_transcript MGP_AJ_T0031981.1 MGP_AJ_G0019004.1 mouse_genomes_project 11 96020273 96022659 - Pcgf2 protein_coding processed_transcript MGP_AJ_T0009750.1 MGP_AJ_G0007872.1 mouse_genomes_project 11 99895489 99895556 - Mir6929 miRNA miRNA MGP_AJ_T0028939.1 MGP_AJ_G0018247.1 mouse_genomes_project 11 49308711 49318654 + MGP_AJ_P0028939 Cdkn2aipnl protein_coding protein_coding MGP_AJ_T0028940.1 MGP_AJ_G0018247.1 mouse_genomes_project 11 49308942 49317564 + MGP_AJ_P0028940 Cdkn2aipnl protein_coding nonsense_mediated_decay MGP_AJ_T0100609.1 MGP_AJ_G0038575.1 mouse_genomes_project 11 72814883 72814974 + Gm22771 snoRNA snoRNA MGP_AJ_T0033341.1 MGP_AJ_G0019344.1 mouse_genomes_project 11 113988548 114049342 + MGP_AJ_P0033341 Tmem104 protein_coding protein_coding MGP_AJ_T0033342.1 MGP_AJ_G0019344.1 mouse_genomes_project 11 113988548 114049342 + MGP_AJ_P0033342 Tmem104 protein_coding protein_coding MGP_AJ_T0033343.1 MGP_AJ_G0019344.1 mouse_genomes_project 11 113988572 113998701 + Tmem104 protein_coding processed_transcript MGP_AJ_T0033344.1 MGP_AJ_G0019344.1 mouse_genomes_project 11 113988612 114048084 + Tmem104 protein_coding processed_transcript MGP_AJ_T0032164.1 MGP_AJ_G0019047.1 mouse_genomes_project 11 97344451 97345288 - MGP_AJ_P0032164 Gjd3 protein_coding protein_coding MGP_AJ_T0028816.1 MGP_AJ_G0018214.1 mouse_genomes_project 11 47528611 47566011 - MGP_AJ_P0028816 Maml1 protein_coding protein_coding MGP_AJ_T0028817.1 MGP_AJ_G0018214.1 mouse_genomes_project 11 47528611 47566518 - MGP_AJ_P0028817 Maml1 protein_coding protein_coding MGP_AJ_T0033347.1 MGP_AJ_G0019346.1 mouse_genomes_project 11 114070391 114079287 - Fdxr protein_coding processed_transcript MGP_AJ_T0033348.1 MGP_AJ_G0019346.1 mouse_genomes_project 11 114070391 114079423 - MGP_AJ_P0033348 Fdxr protein_coding protein_coding MGP_AJ_T0033349.1 MGP_AJ_G0019346.1 mouse_genomes_project 11 114070715 114071382 - Fdxr protein_coding processed_transcript MGP_AJ_T0033350.1 MGP_AJ_G0019346.1 mouse_genomes_project 11 114074199 114079097 - Fdxr protein_coding processed_transcript MGP_AJ_T0029019.1 MGP_AJ_G0018268.1 mouse_genomes_project 11 50970917 51005400 + MGP_AJ_P0029019 Kif3a protein_coding protein_coding MGP_AJ_T0029020.1 MGP_AJ_G0018268.1 mouse_genomes_project 11 50970917 51004542 + MGP_AJ_P0029020 Kif3a protein_coding protein_coding MGP_AJ_T0029021.1 MGP_AJ_G0018268.1 mouse_genomes_project 11 50970935 51004539 + MGP_AJ_P0029021 Kif3a protein_coding protein_coding MGP_AJ_T0029022.1 MGP_AJ_G0018268.1 mouse_genomes_project 11 50971064 51004496 + MGP_AJ_P0029022 Kif3a protein_coding protein_coding MGP_AJ_T0029023.1 MGP_AJ_G0018268.1 mouse_genomes_project 11 50971254 50982664 + Kif3a protein_coding processed_transcript MGP_AJ_T0029024.1 MGP_AJ_G0018268.1 mouse_genomes_project 11 50971399 50983289 + MGP_AJ_P0029024 Kif3a protein_coding protein_coding MGP_AJ_T0029025.1 MGP_AJ_G0018268.1 mouse_genomes_project 11 50982648 50990429 + MGP_AJ_P0029025 Kif3a protein_coding nonsense_mediated_decay MGP_AJ_T0029026.1 MGP_AJ_G0018268.1 mouse_genomes_project 11 50997596 51004737 + MGP_AJ_P0029026 Kif3a protein_coding protein_coding MGP_AJ_T0003345.1 MGP_AJ_G0003081.1 mouse_genomes_project 11 115381057 115384936 - Gm29292 antisense antisense MGP_AJ_T0033702.1 MGP_AJ_G0019411.1 mouse_genomes_project 11 115677802 115700313 + MGP_AJ_P0033702 Mfsd11 protein_coding nonsense_mediated_decay MGP_AJ_T0033703.1 MGP_AJ_G0019411.1 mouse_genomes_project 11 115678657 115684488 + Mfsd11 protein_coding retained_intron MGP_AJ_T0033704.1 MGP_AJ_G0019411.1 mouse_genomes_project 11 115678837 115679422 + Mfsd11 protein_coding processed_transcript MGP_AJ_T0033705.1 MGP_AJ_G0019411.1 mouse_genomes_project 11 115679125 115700320 + MGP_AJ_P0033705 Mfsd11 protein_coding nonsense_mediated_decay MGP_AJ_T0033706.1 MGP_AJ_G0019411.1 mouse_genomes_project 11 115679142 115679620 + Mfsd11 protein_coding retained_intron MGP_AJ_T0033707.1 MGP_AJ_G0019411.1 mouse_genomes_project 11 115679183 115701058 + MGP_AJ_P0033707 Mfsd11 protein_coding protein_coding MGP_AJ_T0033708.1 MGP_AJ_G0019411.1 mouse_genomes_project 11 115679192 115680080 + Mfsd11 protein_coding retained_intron MGP_AJ_T0033709.1 MGP_AJ_G0019411.1 mouse_genomes_project 11 115679258 115701058 + MGP_AJ_P0033709 Mfsd11 protein_coding nonsense_mediated_decay MGP_AJ_T0033710.1 MGP_AJ_G0019411.1 mouse_genomes_project 11 115679389 115699768 + MGP_AJ_P0033710 Mfsd11 protein_coding nonsense_mediated_decay MGP_AJ_T0033711.1 MGP_AJ_G0019411.1 mouse_genomes_project 11 115679441 115699546 + MGP_AJ_P0033711 Mfsd11 protein_coding protein_coding MGP_AJ_T0033712.1 MGP_AJ_G0019411.1 mouse_genomes_project 11 115684517 115687273 + Mfsd11 protein_coding retained_intron MGP_AJ_T0033713.1 MGP_AJ_G0019411.1 mouse_genomes_project 11 115693996 115699438 + Mfsd11 protein_coding processed_transcript MGP_AJ_T0030650.1 MGP_AJ_G0018678.1 mouse_genomes_project 11 73354899 73368542 - MGP_AJ_P0030650 Wdr81 protein_coding protein_coding MGP_AJ_T0030651.1 MGP_AJ_G0018678.1 mouse_genomes_project 11 73354903 73365186 - MGP_AJ_P0030651 Wdr81 protein_coding protein_coding MGP_AJ_T0030652.1 MGP_AJ_G0018678.1 mouse_genomes_project 11 73362120 73363734 - Wdr81 protein_coding processed_transcript MGP_AJ_T0012778.1 MGP_AJ_G0010873.1 mouse_genomes_project 11 113697848 113698303 + processed_pseudogene processed_pseudogene MGP_AJ_T0098388.1 MGP_AJ_G0036372.1 mouse_genomes_project 11 112228142 112232627 + pseudogene pseudogene MGP_AJ_T0003235.1 MGP_AJ_G0002994.1 mouse_genomes_project 11 77678572 77683298 - Rab11fip4os2 antisense antisense MGP_AJ_T0003236.1 MGP_AJ_G0002994.1 mouse_genomes_project 11 77682081 77683343 - Rab11fip4os2 antisense antisense MGP_AJ_T0003197.1 MGP_AJ_G0002962.1 mouse_genomes_project 11 60367538 60376739 + antisense antisense MGP_AJ_T0030174.1 MGP_AJ_G0018554.1 mouse_genomes_project 11 68055982 68061594 - MGP_AJ_P0030174 Bcl6b protein_coding protein_coding MGP_AJ_T0030175.1 MGP_AJ_G0018554.1 mouse_genomes_project 11 68060394 68061532 - MGP_AJ_P0030175 Bcl6b protein_coding protein_coding MGP_AJ_T0030176.1 MGP_AJ_G0018554.1 mouse_genomes_project 11 68060463 68061653 - Bcl6b protein_coding retained_intron MGP_AJ_T0100628.1 MGP_AJ_G0038594.1 mouse_genomes_project 11 101374979 101375116 + Gm22683 snoRNA snoRNA MGP_AJ_T0102245.1 MGP_AJ_G0039988.1 mouse_genomes_project 11 74080174 74080636 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0030638.1 MGP_AJ_G0018676.1 mouse_genomes_project 11 73323478 73336426 - MGP_AJ_P0030638 Serpinf1 protein_coding protein_coding MGP_AJ_T0030639.1 MGP_AJ_G0018676.1 mouse_genomes_project 11 73323773 73331706 - MGP_AJ_P0030639 Serpinf1 protein_coding nonsense_mediated_decay MGP_AJ_T0030640.1 MGP_AJ_G0018676.1 mouse_genomes_project 11 73323930 73329440 - MGP_AJ_P0030640 Serpinf1 protein_coding nonsense_mediated_decay MGP_AJ_T0030641.1 MGP_AJ_G0018676.1 mouse_genomes_project 11 73327623 73336311 - MGP_AJ_P0030641 Serpinf1 protein_coding protein_coding MGP_AJ_T0030642.1 MGP_AJ_G0018676.1 mouse_genomes_project 11 73327682 73328905 - Serpinf1 protein_coding retained_intron MGP_AJ_T0030643.1 MGP_AJ_G0018676.1 mouse_genomes_project 11 73328630 73336280 - MGP_AJ_P0030643 Serpinf1 protein_coding protein_coding MGP_AJ_T0030644.1 MGP_AJ_G0018676.1 mouse_genomes_project 11 73329179 73336277 - MGP_AJ_P0030644 Serpinf1 protein_coding protein_coding MGP_AJ_T0030645.1 MGP_AJ_G0018676.1 mouse_genomes_project 11 73330025 73332007 - MGP_AJ_P0030645 Serpinf1 protein_coding protein_coding MGP_AJ_T0028485.1 MGP_AJ_G0018119.1 mouse_genomes_project 11 30694065 30722086 + MGP_AJ_P0028485 protein_coding protein_coding MGP_AJ_T0031756.1 MGP_AJ_G0018947.1 mouse_genomes_project 11 93522400 93530163 + MGP_AJ_P0031756 Tac4 protein_coding protein_coding MGP_AJ_T0030456.1 MGP_AJ_G0018614.1 mouse_genomes_project 11 70697070 70753610 + Zzef1 protein_coding retained_intron MGP_AJ_T0030457.1 MGP_AJ_G0018614.1 mouse_genomes_project 11 70697070 70829429 + MGP_AJ_P0030457 Zzef1 protein_coding protein_coding MGP_AJ_T0030458.1 MGP_AJ_G0018614.1 mouse_genomes_project 11 70697098 70829427 + MGP_AJ_P0030458 Zzef1 protein_coding protein_coding MGP_AJ_T0030459.1 MGP_AJ_G0018614.1 mouse_genomes_project 11 70737248 70827028 + MGP_AJ_P0030459 Zzef1 protein_coding unknown_likely_coding MGP_AJ_T0030460.1 MGP_AJ_G0018614.1 mouse_genomes_project 11 70745692 70752975 + Zzef1 protein_coding processed_transcript MGP_AJ_T0030461.1 MGP_AJ_G0018614.1 mouse_genomes_project 11 70814605 70828121 + Zzef1 protein_coding retained_intron MGP_AJ_T0030462.1 MGP_AJ_G0018614.1 mouse_genomes_project 11 70817252 70821207 + Zzef1 protein_coding retained_intron MGP_AJ_T0030463.1 MGP_AJ_G0018614.1 mouse_genomes_project 11 70823153 70829429 + Zzef1 protein_coding retained_intron MGP_AJ_T0031827.1 MGP_AJ_G0018967.1 mouse_genomes_project 11 94416260 94448470 + MGP_AJ_P0031827 Ttll6 protein_coding protein_coding MGP_AJ_T0031828.1 MGP_AJ_G0018967.1 mouse_genomes_project 11 94416689 94448470 + MGP_AJ_P0031828 Ttll6 protein_coding protein_coding MGP_AJ_T0028108.1 MGP_AJ_G0018030.1 mouse_genomes_project 11 14082983 14133485 + Wdr92 protein_coding processed_transcript MGP_AJ_T0028111.1 MGP_AJ_G0018030.1 mouse_genomes_project 11 14112755 14134369 + MGP_AJ_P0028111 Wdr92 protein_coding protein_coding MGP_AJ_T0006332.1 MGP_AJ_G0005278.1 mouse_genomes_project 11 96216816 96226935 + Gm11630 lincRNA lincRNA MGP_AJ_T0102263.1 MGP_AJ_G0040006.1 mouse_genomes_project 11 99822603 99823507 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0012669.1 MGP_AJ_G0010764.1 mouse_genomes_project 11 70734594 70736437 + processed_pseudogene processed_pseudogene MGP_AJ_T0030801.1 MGP_AJ_G0018711.1 mouse_genomes_project 11 75159826 75341999 + MGP_AJ_P0030801 Ssh2 protein_coding protein_coding MGP_AJ_T0030802.1 MGP_AJ_G0018711.1 mouse_genomes_project 11 75159826 75406152 + MGP_AJ_P0030802 Ssh2 protein_coding protein_coding MGP_AJ_T0030803.1 MGP_AJ_G0018711.1 mouse_genomes_project 11 75295241 75298686 + Ssh2 protein_coding retained_intron MGP_AJ_T0030804.1 MGP_AJ_G0018711.1 mouse_genomes_project 11 75296777 75362463 + Ssh2 protein_coding processed_transcript MGP_AJ_T0030805.1 MGP_AJ_G0018711.1 mouse_genomes_project 11 75296779 75401453 + MGP_AJ_P0030805 Ssh2 protein_coding protein_coding MGP_AJ_T0030806.1 MGP_AJ_G0018711.1 mouse_genomes_project 11 75296785 75380985 + Ssh2 protein_coding retained_intron MGP_AJ_T0030807.1 MGP_AJ_G0018711.1 mouse_genomes_project 11 75340282 75342849 + Ssh2 protein_coding retained_intron MGP_AJ_T0006263.1 MGP_AJ_G0005231.1 mouse_genomes_project 11 64869177 64876824 - 2310065F04Rik lincRNA lincRNA MGP_AJ_T0006264.1 MGP_AJ_G0005231.1 mouse_genomes_project 11 64870725 64873547 - 2310065F04Rik lincRNA lincRNA MGP_AJ_T0033228.1 MGP_AJ_G0019315.1 mouse_genomes_project 11 109772431 109784163 + MGP_AJ_P0033228 Kcnj2 protein_coding protein_coding MGP_AJ_T0029880.1 MGP_AJ_G0018488.1 mouse_genomes_project 11 66911519 66914055 - MGP_AJ_P0029880 9130213A22Rik protein_coding protein_coding MGP_AJ_T0032780.1 MGP_AJ_G0019215.1 mouse_genomes_project 11 101425317 101429328 + MGP_AJ_P0032780 Ccdc103 protein_coding protein_coding MGP_AJ_T0032781.1 MGP_AJ_G0019215.1 mouse_genomes_project 11 101425358 101428641 + MGP_AJ_P0032781 Ccdc103 protein_coding protein_coding MGP_AJ_T0031508.1 MGP_AJ_G0018886.1 mouse_genomes_project 11 86181539 86189526 - MGP_AJ_P0031508 Dynll2 protein_coding protein_coding MGP_AJ_T0031509.1 MGP_AJ_G0018886.1 mouse_genomes_project 11 86181539 86186020 - MGP_AJ_P0031509 Dynll2 protein_coding protein_coding MGP_AJ_T0031510.1 MGP_AJ_G0018886.1 mouse_genomes_project 11 86181539 86188578 - MGP_AJ_P0031510 Dynll2 protein_coding protein_coding MGP_AJ_T0031511.1 MGP_AJ_G0018886.1 mouse_genomes_project 11 86182171 86189349 - MGP_AJ_P0031511 Dynll2 protein_coding nonsense_mediated_decay MGP_AJ_T0032241.1 MGP_AJ_G0019098.1 mouse_genomes_project 11 98347138 98348215 + MGP_AJ_P0032241 Krtap9-5 protein_coding protein_coding MGP_AJ_T0012480.1 MGP_AJ_G0010575.1 mouse_genomes_project 11 6120835 6121655 - processed_pseudogene processed_pseudogene MGP_AJ_T0028450.1 MGP_AJ_G0018105.1 mouse_genomes_project 11 29334178 29351732 + MGP_AJ_P0028450 protein_coding protein_coding MGP_AJ_T0012691.1 MGP_AJ_G0010786.1 mouse_genomes_project 11 76687948 76688972 - processed_pseudogene processed_pseudogene MGP_AJ_T0012772.1 MGP_AJ_G0010867.1 mouse_genomes_project 11 110336720 110337210 - processed_pseudogene processed_pseudogene MGP_AJ_T0003173.1 MGP_AJ_G0002942.1 mouse_genomes_project 11 53263487 53560994 + antisense antisense MGP_AJ_T0003161.1 MGP_AJ_G0002932.1 mouse_genomes_project 11 50511050 50519402 - Gm11186 antisense antisense MGP_AJ_T0031046.1 MGP_AJ_G0018766.1 mouse_genomes_project 11 77520437 77529146 - MGP_AJ_P0031046 protein_coding protein_coding MGP_AJ_T0098540.1 MGP_AJ_G0036524.1 mouse_genomes_project 11 65823588 65823714 + Gm26157 rRNA rRNA MGP_AJ_T0099353.1 MGP_AJ_G0037319.1 mouse_genomes_project 11 83326628 83326735 + Gm23506 snRNA snRNA MGP_AJ_T0009777.1 MGP_AJ_G0007899.1 mouse_genomes_project 11 119534903 119534957 - Mir6936 miRNA miRNA MGP_AJ_T0032709.1 MGP_AJ_G0019203.1 mouse_genomes_project 11 100958302 100964780 + MGP_AJ_P0032709 Grn protein_coding protein_coding MGP_AJ_T0032710.1 MGP_AJ_G0019203.1 mouse_genomes_project 11 100958505 100962417 + MGP_AJ_P0032710 Grn protein_coding protein_coding MGP_AJ_T0032711.1 MGP_AJ_G0019203.1 mouse_genomes_project 11 100960757 100962228 + Grn protein_coding retained_intron MGP_AJ_T0032712.1 MGP_AJ_G0019203.1 mouse_genomes_project 11 100961902 100962564 + Grn protein_coding retained_intron MGP_AJ_T0032713.1 MGP_AJ_G0019203.1 mouse_genomes_project 11 100962069 100963233 + Grn protein_coding retained_intron MGP_AJ_T0032714.1 MGP_AJ_G0019203.1 mouse_genomes_project 11 100962072 100962862 + Grn protein_coding retained_intron MGP_AJ_T0032715.1 MGP_AJ_G0019203.1 mouse_genomes_project 11 100962688 100963915 + Grn protein_coding retained_intron MGP_AJ_T0032716.1 MGP_AJ_G0019203.1 mouse_genomes_project 11 100963255 100964544 + MGP_AJ_P0032716 Grn protein_coding protein_coding MGP_AJ_T0032717.1 MGP_AJ_G0019203.1 mouse_genomes_project 11 100963276 100964035 + Grn protein_coding retained_intron MGP_AJ_T0032718.1 MGP_AJ_G0019203.1 mouse_genomes_project 11 100963386 100964996 + MGP_AJ_P0032718 Grn protein_coding protein_coding MGP_AJ_T0099360.1 MGP_AJ_G0037326.1 mouse_genomes_project 11 85878149 85878249 - Gm25968 snRNA snRNA MGP_AJ_T0017263.1 MGP_AJ_G0015190.1 mouse_genomes_project 11 106181023 106198473 - A830035A12Rik processed_transcript processed_transcript MGP_AJ_T0034031.1 MGP_AJ_G0019476.1 mouse_genomes_project 11 119451949 119458798 - Fam195b protein_coding processed_transcript MGP_AJ_T0034032.1 MGP_AJ_G0019476.1 mouse_genomes_project 11 119451949 119458824 - MGP_AJ_P0034032 Fam195b protein_coding protein_coding MGP_AJ_T0032234.1 MGP_AJ_G0019091.1 mouse_genomes_project 11 98212147 98215536 - MGP_AJ_P0032234 Gm11564 protein_coding protein_coding MGP_AJ_T0033774.1 MGP_AJ_G0019425.1 mouse_genomes_project 11 116734613 116739424 + MGP_AJ_P0033774 Tmem235 protein_coding protein_coding MGP_AJ_T0012634.1 MGP_AJ_G0010729.1 mouse_genomes_project 11 57933549 57934511 + processed_pseudogene processed_pseudogene MGP_AJ_T0099361.1 MGP_AJ_G0037327.1 mouse_genomes_project 11 87130935 87131042 + Gm23507 snRNA snRNA MGP_AJ_T0032134.1 MGP_AJ_G0019040.1 mouse_genomes_project 11 97124526 97131928 - MGP_AJ_P0032134 Nr1d1 protein_coding protein_coding MGP_AJ_T0032135.1 MGP_AJ_G0019040.1 mouse_genomes_project 11 97125941 97127021 - Nr1d1 protein_coding processed_transcript MGP_AJ_T0006309.1 MGP_AJ_G0005263.1 mouse_genomes_project 11 86462956 86466984 + Gm44783 lincRNA lincRNA MGP_AJ_T0032738.1 MGP_AJ_G0019207.1 mouse_genomes_project 11 101108000 101111064 - MGP_AJ_P0032738 Gm11627 protein_coding protein_coding MGP_AJ_T0032739.1 MGP_AJ_G0019207.1 mouse_genomes_project 11 101108046 101110878 - Gm11627 protein_coding processed_transcript MGP_AJ_T0032740.1 MGP_AJ_G0019207.1 mouse_genomes_project 11 101108093 101110721 - MGP_AJ_P0032740 Gm11627 protein_coding protein_coding MGP_AJ_T0029237.1 MGP_AJ_G0018334.1 mouse_genomes_project 11 56093948 56101747 - MGP_AJ_P0029237 2210407C18Rik protein_coding protein_coding MGP_AJ_T0029238.1 MGP_AJ_G0018334.1 mouse_genomes_project 11 56093953 56099167 - MGP_AJ_P0029238 2210407C18Rik protein_coding protein_coding MGP_AJ_T0029239.1 MGP_AJ_G0018334.1 mouse_genomes_project 11 56097972 56099160 - 2210407C18Rik protein_coding processed_transcript MGP_AJ_T0101939.1 MGP_AJ_G0039788.1 mouse_genomes_project 11 2730550 2750132 + transcribed_unprocessed_pseudogene processed_transcript MGP_AJ_T0101940.1 MGP_AJ_G0039788.1 mouse_genomes_project 11 2730571 2752971 + transcribed_unprocessed_pseudogene processed_transcript MGP_AJ_T0101941.1 MGP_AJ_G0039788.1 mouse_genomes_project 11 2730571 2750496 + transcribed_unprocessed_pseudogene processed_transcript MGP_AJ_T0101942.1 MGP_AJ_G0039788.1 mouse_genomes_project 11 2730638 2752198 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_AJ_T0101943.1 MGP_AJ_G0039788.1 mouse_genomes_project 11 2733972 2752689 + transcribed_unprocessed_pseudogene processed_transcript MGP_AJ_T0012547.1 MGP_AJ_G0010642.1 mouse_genomes_project 11 26677526 26679121 - processed_pseudogene processed_pseudogene MGP_AJ_T0033353.1 MGP_AJ_G0019348.1 mouse_genomes_project 11 114110321 114135824 + MGP_AJ_P0033353 Otop2 protein_coding protein_coding MGP_AJ_T0033355.1 MGP_AJ_G0019348.1 mouse_genomes_project 11 114125851 114126833 + Otop2 protein_coding processed_transcript MGP_AJ_T0033356.1 MGP_AJ_G0019348.1 mouse_genomes_project 11 114126082 114126826 + Otop2 protein_coding processed_transcript MGP_AJ_T0033357.1 MGP_AJ_G0019348.1 mouse_genomes_project 11 114126246 114135824 + MGP_AJ_P0033357 Otop2 protein_coding protein_coding MGP_AJ_T0028402.1 MGP_AJ_G0018096.1 mouse_genomes_project 11 28913569 28973018 + MGP_AJ_P0028402 Cpeb4 protein_coding protein_coding MGP_AJ_T0028403.1 MGP_AJ_G0018096.1 mouse_genomes_project 11 28913584 28977075 + MGP_AJ_P0028403 Cpeb4 protein_coding protein_coding MGP_AJ_T0028404.1 MGP_AJ_G0018096.1 mouse_genomes_project 11 28914633 28977075 + MGP_AJ_P0028404 Cpeb4 protein_coding protein_coding MGP_AJ_T0012495.1 MGP_AJ_G0010590.1 mouse_genomes_project 11 13537956 13538869 - processed_pseudogene processed_pseudogene MGP_AJ_T0032605.1 MGP_AJ_G0019188.1 mouse_genomes_project 11 100611365 100612757 - MGP_AJ_P0032605 Ppy protein_coding protein_coding MGP_AJ_T0032606.1 MGP_AJ_G0019188.1 mouse_genomes_project 11 100611365 100612748 - MGP_AJ_P0032606 Ppy protein_coding protein_coding MGP_AJ_T0028353.1 MGP_AJ_G0018084.1 mouse_genomes_project 11 26733421 27018341 - MGP_AJ_P0028353 Eml6 protein_coding protein_coding MGP_AJ_T0028354.1 MGP_AJ_G0018084.1 mouse_genomes_project 11 26734511 26754466 - Eml6 protein_coding retained_intron MGP_AJ_T0028355.1 MGP_AJ_G0018084.1 mouse_genomes_project 11 26734960 27018363 - MGP_AJ_P0028355 Eml6 protein_coding unknown_likely_coding MGP_AJ_T0028356.1 MGP_AJ_G0018084.1 mouse_genomes_project 11 26737020 26741802 - Eml6 protein_coding retained_intron MGP_AJ_T0028357.1 MGP_AJ_G0018084.1 mouse_genomes_project 11 26737832 26739858 - Eml6 protein_coding retained_intron MGP_AJ_T0028358.1 MGP_AJ_G0018084.1 mouse_genomes_project 11 26740295 26750496 - MGP_AJ_P0028358 Eml6 protein_coding nonsense_mediated_decay MGP_AJ_T0028359.1 MGP_AJ_G0018084.1 mouse_genomes_project 11 26766959 27018367 - MGP_AJ_P0028359 Eml6 protein_coding unknown_likely_coding MGP_AJ_T0028360.1 MGP_AJ_G0018084.1 mouse_genomes_project 11 26793150 26794255 - Eml6 protein_coding retained_intron MGP_AJ_T0028361.1 MGP_AJ_G0018084.1 mouse_genomes_project 11 26800459 26812779 - MGP_AJ_P0028361 Eml6 protein_coding nonsense_mediated_decay MGP_AJ_T0032113.1 MGP_AJ_G0019038.1 mouse_genomes_project 11 97060186 97085436 - Med24 protein_coding retained_intron MGP_AJ_T0032114.1 MGP_AJ_G0019038.1 mouse_genomes_project 11 97060186 97086037 - MGP_AJ_P0032114 Med24 protein_coding protein_coding MGP_AJ_T0032115.1 MGP_AJ_G0019038.1 mouse_genomes_project 11 97060438 97062076 - Med24 protein_coding retained_intron MGP_AJ_T0032116.1 MGP_AJ_G0019038.1 mouse_genomes_project 11 97060495 97086012 - MGP_AJ_P0032116 Med24 protein_coding protein_coding MGP_AJ_T0032117.1 MGP_AJ_G0019038.1 mouse_genomes_project 11 97060495 97085969 - MGP_AJ_P0032117 Med24 protein_coding nonsense_mediated_decay MGP_AJ_T0032118.1 MGP_AJ_G0019038.1 mouse_genomes_project 11 97062022 97062847 - Med24 protein_coding retained_intron MGP_AJ_T0032119.1 MGP_AJ_G0019038.1 mouse_genomes_project 11 97062861 97063599 - Med24 protein_coding processed_transcript MGP_AJ_T0032120.1 MGP_AJ_G0019038.1 mouse_genomes_project 11 97064437 97086020 - Med24 protein_coding retained_intron MGP_AJ_T0032121.1 MGP_AJ_G0019038.1 mouse_genomes_project 11 97065241 97066662 - Med24 protein_coding retained_intron MGP_AJ_T0032122.1 MGP_AJ_G0019038.1 mouse_genomes_project 11 97074526 97075427 - Med24 protein_coding processed_transcript MGP_AJ_T0032123.1 MGP_AJ_G0019038.1 mouse_genomes_project 11 97075167 97085976 - MGP_AJ_P0032123 Med24 protein_coding protein_coding MGP_AJ_T0032124.1 MGP_AJ_G0019038.1 mouse_genomes_project 11 97075254 97086005 - Med24 protein_coding retained_intron MGP_AJ_T0006335.1 MGP_AJ_G0005281.1 mouse_genomes_project 11 100103164 100103726 + Gm11635 lincRNA lincRNA MGP_AJ_T0006336.1 MGP_AJ_G0005281.1 mouse_genomes_project 11 100103250 100109136 + Gm11635 lincRNA lincRNA MGP_AJ_T0012599.1 MGP_AJ_G0010694.1 mouse_genomes_project 11 48420124 48421363 + processed_pseudogene processed_pseudogene MGP_AJ_T0028589.1 MGP_AJ_G0018145.1 mouse_genomes_project 11 40627161 40644285 + MGP_AJ_P0028589 C1qtnf2 protein_coding protein_coding MGP_AJ_T0028590.1 MGP_AJ_G0018145.1 mouse_genomes_project 11 40627191 40644305 + MGP_AJ_P0028590 C1qtnf2 protein_coding protein_coding MGP_AJ_T0028591.1 MGP_AJ_G0018145.1 mouse_genomes_project 11 40633646 40643644 + MGP_AJ_P0028591 C1qtnf2 protein_coding protein_coding MGP_AJ_T0003125.1 MGP_AJ_G0002900.1 mouse_genomes_project 11 13714734 13730007 - Egfros antisense antisense MGP_AJ_T0029498.1 MGP_AJ_G0018408.1 mouse_genomes_project 11 59179888 59183268 + MGP_AJ_P0029498 Mfap4 protein_coding protein_coding MGP_AJ_T0029499.1 MGP_AJ_G0018408.1 mouse_genomes_project 11 59179918 59182443 + MGP_AJ_P0029499 Mfap4 protein_coding protein_coding MGP_AJ_T0029500.1 MGP_AJ_G0018408.1 mouse_genomes_project 11 59179948 59181410 + Mfap4 protein_coding processed_transcript MGP_AJ_T0029501.1 MGP_AJ_G0018408.1 mouse_genomes_project 11 59179973 59183268 + Mfap4 protein_coding processed_transcript MGP_AJ_T0006286.1 MGP_AJ_G0005250.1 mouse_genomes_project 11 77789835 77790744 - 9130204K15Rik lincRNA lincRNA MGP_AJ_T0006287.1 MGP_AJ_G0005250.1 mouse_genomes_project 11 77789902 77884077 - 9130204K15Rik lincRNA lincRNA MGP_AJ_T0006288.1 MGP_AJ_G0005250.1 mouse_genomes_project 11 77790365 77872431 - 9130204K15Rik lincRNA lincRNA MGP_AJ_T0006289.1 MGP_AJ_G0005250.1 mouse_genomes_project 11 77805697 77814947 - 9130204K15Rik lincRNA lincRNA MGP_AJ_T0031073.1 MGP_AJ_G0018772.1 mouse_genomes_project 11 78110805 78157974 + MGP_AJ_P0031073 Atad5 protein_coding protein_coding MGP_AJ_T0031074.1 MGP_AJ_G0018772.1 mouse_genomes_project 11 78110805 78157971 + MGP_AJ_P0031074 Atad5 protein_coding protein_coding MGP_AJ_T0031075.1 MGP_AJ_G0018772.1 mouse_genomes_project 11 78123548 78157974 + Atad5 protein_coding processed_transcript MGP_AJ_T0031076.1 MGP_AJ_G0018772.1 mouse_genomes_project 11 78124667 78130238 + Atad5 protein_coding retained_intron MGP_AJ_T0031396.1 MGP_AJ_G0018858.1 mouse_genomes_project 11 84721065 84743553 + MGP_AJ_P0031396 Tubd1 protein_coding protein_coding MGP_AJ_T0031397.1 MGP_AJ_G0018858.1 mouse_genomes_project 11 84721065 84743554 + MGP_AJ_P0031397 Tubd1 protein_coding protein_coding MGP_AJ_T0031398.1 MGP_AJ_G0018858.1 mouse_genomes_project 11 84721065 84743554 + MGP_AJ_P0031398 Tubd1 protein_coding protein_coding MGP_AJ_T0031399.1 MGP_AJ_G0018858.1 mouse_genomes_project 11 84721065 84743554 + MGP_AJ_P0031399 Tubd1 protein_coding protein_coding MGP_AJ_T0031400.1 MGP_AJ_G0018858.1 mouse_genomes_project 11 84730910 84743554 + MGP_AJ_P0031400 Tubd1 protein_coding protein_coding MGP_AJ_T0028483.1 MGP_AJ_G0018118.1 mouse_genomes_project 11 30644017 30673843 - MGP_AJ_P0028483 Gabrp protein_coding protein_coding MGP_AJ_T0028484.1 MGP_AJ_G0018118.1 mouse_genomes_project 11 30666662 30673845 - MGP_AJ_P0028484 Gabrp protein_coding protein_coding MGP_AJ_T0003131.1 MGP_AJ_G0002904.1 mouse_genomes_project 11 20825332 20826261 + Gm12061 antisense antisense MGP_AJ_T0012610.1 MGP_AJ_G0010705.1 mouse_genomes_project 11 51339087 51341661 + processed_pseudogene processed_pseudogene MGP_AJ_T0032786.1 MGP_AJ_G0019218.1 mouse_genomes_project 11 101449205 101468892 - MGP_AJ_P0032786 Kif18b protein_coding protein_coding MGP_AJ_T0032787.1 MGP_AJ_G0019218.1 mouse_genomes_project 11 101460164 101468856 - Kif18b protein_coding processed_transcript MGP_AJ_T0098543.1 MGP_AJ_G0036527.1 mouse_genomes_project 11 81897585 81897695 - Gm22311 rRNA rRNA MGP_AJ_T0030523.1 MGP_AJ_G0018636.1 mouse_genomes_project 11 71480812 71481819 + MGP_AJ_P0030523 Olfr384 protein_coding protein_coding MGP_AJ_T0031969.1 MGP_AJ_G0019003.1 mouse_genomes_project 11 95985626 96007517 + MGP_AJ_P0031969 Mllt6 protein_coding protein_coding MGP_AJ_T0031970.1 MGP_AJ_G0019003.1 mouse_genomes_project 11 95987076 96004624 + Mllt6 protein_coding processed_transcript MGP_AJ_T0031971.1 MGP_AJ_G0019003.1 mouse_genomes_project 11 95987076 96007528 + MGP_AJ_P0031971 Mllt6 protein_coding protein_coding MGP_AJ_T0031972.1 MGP_AJ_G0019003.1 mouse_genomes_project 11 95987122 95995657 + Mllt6 protein_coding processed_transcript MGP_AJ_T0031973.1 MGP_AJ_G0019003.1 mouse_genomes_project 11 95998160 96000479 + Mllt6 protein_coding processed_transcript MGP_AJ_T0031974.1 MGP_AJ_G0019003.1 mouse_genomes_project 11 95998160 96000479 + Mllt6 protein_coding processed_transcript MGP_AJ_T0030254.1 MGP_AJ_G0018572.1 mouse_genomes_project 11 68457895 68462207 - MGP_AJ_P0030254 Chrne protein_coding protein_coding MGP_AJ_T0030255.1 MGP_AJ_G0018572.1 mouse_genomes_project 11 68457895 68462229 - MGP_AJ_P0030255 Chrne protein_coding protein_coding MGP_AJ_T0030256.1 MGP_AJ_G0018572.1 mouse_genomes_project 11 68457897 68458686 - Chrne protein_coding retained_intron MGP_AJ_T0030257.1 MGP_AJ_G0018572.1 mouse_genomes_project 11 68457905 68458710 - Chrne protein_coding retained_intron MGP_AJ_T0003342.1 MGP_AJ_G0003078.1 mouse_genomes_project 11 114753863 114755094 + Recql5os1 antisense antisense MGP_AJ_T0099372.1 MGP_AJ_G0037338.1 mouse_genomes_project 11 99870477 99870657 - Gm25475 snRNA snRNA MGP_AJ_T0012752.1 MGP_AJ_G0010847.1 mouse_genomes_project 11 101270484 101271248 - processed_pseudogene processed_pseudogene MGP_AJ_T0032433.1 MGP_AJ_G0019154.1 mouse_genomes_project 11 99634917 99637351 - MGP_AJ_P0032433 Ccr10 protein_coding protein_coding MGP_AJ_T0028880.1 MGP_AJ_G0018230.1 mouse_genomes_project 11 48292038 48293093 + MGP_AJ_P0028880 Olfr51 protein_coding protein_coding MGP_AJ_T0003330.1 MGP_AJ_G0003070.1 mouse_genomes_project 11 108022418 108032889 - Gm11696 antisense antisense MGP_AJ_T0003331.1 MGP_AJ_G0003070.1 mouse_genomes_project 11 108023354 108024007 - Gm11696 antisense antisense MGP_AJ_T0003332.1 MGP_AJ_G0003070.1 mouse_genomes_project 11 108024374 108033333 - Gm11696 antisense antisense MGP_AJ_T0003333.1 MGP_AJ_G0003070.1 mouse_genomes_project 11 108024759 108032922 - Gm11696 antisense antisense MGP_AJ_T0030893.1 MGP_AJ_G0018727.1 mouse_genomes_project 11 75993593 76016805 + MGP_AJ_P0030893 Flot2 protein_coding protein_coding MGP_AJ_T0030894.1 MGP_AJ_G0018727.1 mouse_genomes_project 11 75993593 76016805 + MGP_AJ_P0030894 Flot2 protein_coding nonsense_mediated_decay MGP_AJ_T0030895.1 MGP_AJ_G0018727.1 mouse_genomes_project 11 75993603 76016802 + MGP_AJ_P0030895 Flot2 protein_coding protein_coding MGP_AJ_T0030896.1 MGP_AJ_G0018727.1 mouse_genomes_project 11 75993646 76016805 + MGP_AJ_P0030896 Flot2 protein_coding protein_coding MGP_AJ_T0030897.1 MGP_AJ_G0018727.1 mouse_genomes_project 11 75995966 76016805 + Flot2 protein_coding processed_transcript MGP_AJ_T0003275.1 MGP_AJ_G0003023.1 mouse_genomes_project 11 94627566 94639155 - Hoxb3os antisense antisense MGP_AJ_T0003276.1 MGP_AJ_G0003023.1 mouse_genomes_project 11 94629973 94632415 - Hoxb3os antisense antisense MGP_AJ_T0030198.1 MGP_AJ_G0018560.1 mouse_genomes_project 11 68179321 68187185 - MGP_AJ_P0030198 Alox15 protein_coding protein_coding MGP_AJ_T0030199.1 MGP_AJ_G0018560.1 mouse_genomes_project 11 68179774 68180866 - Alox15 protein_coding processed_transcript MGP_AJ_T0032783.1 MGP_AJ_G0019217.1 mouse_genomes_project 11 101431425 101440792 - MGP_AJ_P0032783 Gfap protein_coding protein_coding MGP_AJ_T0032784.1 MGP_AJ_G0019217.1 mouse_genomes_project 11 101434281 101440861 - MGP_AJ_P0032784 Gfap protein_coding protein_coding MGP_AJ_T0032785.1 MGP_AJ_G0019217.1 mouse_genomes_project 11 101438138 101444578 - Gfap protein_coding processed_transcript MGP_AJ_T0006365.1 MGP_AJ_G0005304.1 mouse_genomes_project 11 115869486 115876334 - Gm11728 lincRNA lincRNA MGP_AJ_T0006366.1 MGP_AJ_G0005304.1 mouse_genomes_project 11 115873850 115876329 - Gm11728 lincRNA lincRNA MGP_AJ_T0031566.1 MGP_AJ_G0018903.1 mouse_genomes_project 11 88188258 88209710 - MGP_AJ_P0031566 Pctp protein_coding protein_coding MGP_AJ_T0012608.1 MGP_AJ_G0010703.1 mouse_genomes_project 11 51050732 51051365 + processed_pseudogene processed_pseudogene MGP_AJ_T0012582.1 MGP_AJ_G0010677.1 mouse_genomes_project 11 41654890 41655893 + processed_pseudogene processed_pseudogene MGP_AJ_T0006298.1 MGP_AJ_G0005256.1 mouse_genomes_project 11 82678544 82689037 + Lhx1os lincRNA lincRNA MGP_AJ_T0006299.1 MGP_AJ_G0005256.1 mouse_genomes_project 11 82678553 82689037 + Lhx1os lincRNA lincRNA MGP_AJ_T0006300.1 MGP_AJ_G0005256.1 mouse_genomes_project 11 82678568 82689036 + Lhx1os lincRNA lincRNA MGP_AJ_T0030840.1 MGP_AJ_G0018720.1 mouse_genomes_project 11 75668822 75672057 - Cryba1 protein_coding retained_intron MGP_AJ_T0030841.1 MGP_AJ_G0018720.1 mouse_genomes_project 11 75668834 75675506 - MGP_AJ_P0030841 Cryba1 protein_coding protein_coding MGP_AJ_T0099307.1 MGP_AJ_G0037273.1 mouse_genomes_project 11 1269466 1269573 - Gm24803 snRNA snRNA MGP_AJ_T0028885.1 MGP_AJ_G0018234.1 mouse_genomes_project 11 48584535 48593836 - MGP_AJ_P0028885 BC049762 protein_coding protein_coding MGP_AJ_T0028886.1 MGP_AJ_G0018234.1 mouse_genomes_project 11 48584535 48593931 - MGP_AJ_P0028886 BC049762 protein_coding protein_coding MGP_AJ_T0003364.1 MGP_AJ_G0003095.1 mouse_genomes_project 11 119557615 119567007 + Myadml2os antisense antisense MGP_AJ_T0029462.1 MGP_AJ_G0018401.1 mouse_genomes_project 11 58818601 58841212 + MGP_AJ_P0029462 Tnfrsf13b protein_coding protein_coding MGP_AJ_T0029463.1 MGP_AJ_G0018401.1 mouse_genomes_project 11 58818604 58838711 + MGP_AJ_P0029463 Tnfrsf13b protein_coding protein_coding MGP_AJ_T0029464.1 MGP_AJ_G0018401.1 mouse_genomes_project 11 58818635 58838754 + MGP_AJ_P0029464 Tnfrsf13b protein_coding protein_coding MGP_AJ_T0029465.1 MGP_AJ_G0018401.1 mouse_genomes_project 11 58832682 58839482 + MGP_AJ_P0029465 Tnfrsf13b protein_coding protein_coding MGP_AJ_T0029466.1 MGP_AJ_G0018401.1 mouse_genomes_project 11 58834308 58839773 + Tnfrsf13b protein_coding processed_transcript MGP_AJ_T0029467.1 MGP_AJ_G0018401.1 mouse_genomes_project 11 58834346 58839646 + Tnfrsf13b protein_coding processed_transcript MGP_AJ_T0029468.1 MGP_AJ_G0018401.1 mouse_genomes_project 11 58834512 58839599 + Tnfrsf13b protein_coding processed_transcript MGP_AJ_T0029174.1 MGP_AJ_G0018306.1 mouse_genomes_project 11 54990355 55005716 + MGP_AJ_P0029174 Mfap3 protein_coding protein_coding MGP_AJ_T0029175.1 MGP_AJ_G0018306.1 mouse_genomes_project 11 54990377 55000872 + Mfap3 protein_coding retained_intron MGP_AJ_T0029176.1 MGP_AJ_G0018306.1 mouse_genomes_project 11 54990378 55005715 + MGP_AJ_P0029176 Mfap3 protein_coding protein_coding MGP_AJ_T0029177.1 MGP_AJ_G0018306.1 mouse_genomes_project 11 54994643 55001442 + MGP_AJ_P0029177 Mfap3 protein_coding protein_coding MGP_AJ_T0006322.1 MGP_AJ_G0005272.1 mouse_genomes_project 11 93938077 93940642 + Gm26830 lincRNA lincRNA MGP_AJ_T0033982.1 MGP_AJ_G0019466.1 mouse_genomes_project 11 119287291 119345958 - MGP_AJ_P0033982 Nploc4 protein_coding protein_coding MGP_AJ_T0033983.1 MGP_AJ_G0019466.1 mouse_genomes_project 11 119287291 119345958 - MGP_AJ_P0033983 Nploc4 protein_coding protein_coding MGP_AJ_T0033984.1 MGP_AJ_G0019466.1 mouse_genomes_project 11 119289239 119290425 - Nploc4 protein_coding processed_transcript MGP_AJ_T0033985.1 MGP_AJ_G0019466.1 mouse_genomes_project 11 119311626 119329804 - Nploc4 protein_coding processed_transcript MGP_AJ_T0033986.1 MGP_AJ_G0019466.1 mouse_genomes_project 11 119321000 119324273 - Nploc4 protein_coding processed_transcript MGP_AJ_T0102231.1 MGP_AJ_G0039974.1 mouse_genomes_project 11 51366152 51366324 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0009651.1 MGP_AJ_G0007773.1 mouse_genomes_project 11 1844359 1844417 + Mir6918 miRNA miRNA MGP_AJ_T0009697.1 MGP_AJ_G0007819.1 mouse_genomes_project 11 67315978 67316056 - Gm27493 miRNA miRNA MGP_AJ_T0032611.1 MGP_AJ_G0019190.1 mouse_genomes_project 11 100657831 100661800 + Nags protein_coding processed_transcript MGP_AJ_T0032612.1 MGP_AJ_G0019190.1 mouse_genomes_project 11 100657867 100661800 + MGP_AJ_P0032612 Nags protein_coding protein_coding MGP_AJ_T0032613.1 MGP_AJ_G0019190.1 mouse_genomes_project 11 100658684 100661800 + Nags protein_coding processed_transcript MGP_AJ_T0099330.1 MGP_AJ_G0037296.1 mouse_genomes_project 11 55210789 55210892 + Gm24582 snRNA snRNA MGP_AJ_T0031811.1 MGP_AJ_G0018961.1 mouse_genomes_project 11 94233144 94283392 - MGP_AJ_P0031811 Igf2bp1 protein_coding protein_coding MGP_AJ_T0031812.1 MGP_AJ_G0018961.1 mouse_genomes_project 11 94239519 94243961 - Igf2bp1 protein_coding processed_transcript MGP_AJ_T0031813.1 MGP_AJ_G0018961.1 mouse_genomes_project 11 94249934 94259445 - Igf2bp1 protein_coding processed_transcript MGP_AJ_T0031814.1 MGP_AJ_G0018961.1 mouse_genomes_project 11 94250769 94259462 - Igf2bp1 protein_coding processed_transcript MGP_AJ_T0031815.1 MGP_AJ_G0018961.1 mouse_genomes_project 11 94255250 94259459 - Igf2bp1 protein_coding processed_transcript MGP_AJ_T0033761.1 MGP_AJ_G0019422.1 mouse_genomes_project 11 116686548 116698122 - MGP_AJ_P0033761 Tk1 protein_coding protein_coding MGP_AJ_T0033762.1 MGP_AJ_G0019422.1 mouse_genomes_project 11 116693556 116697867 - Tk1 protein_coding retained_intron MGP_AJ_T0033763.1 MGP_AJ_G0019422.1 mouse_genomes_project 11 116693634 116697897 - Tk1 protein_coding retained_intron MGP_AJ_T0033764.1 MGP_AJ_G0019422.1 mouse_genomes_project 11 116694374 116697877 - Tk1 protein_coding retained_intron MGP_AJ_T0033765.1 MGP_AJ_G0019422.1 mouse_genomes_project 11 116696864 116697847 - Tk1 protein_coding retained_intron MGP_AJ_T0033693.1 MGP_AJ_G0019409.1 mouse_genomes_project 11 115668760 115671386 + protein_coding retained_intron MGP_AJ_T0033694.1 MGP_AJ_G0019409.1 mouse_genomes_project 11 115668784 115671308 + protein_coding retained_intron MGP_AJ_T0033695.1 MGP_AJ_G0019409.1 mouse_genomes_project 11 115668874 115673619 + MGP_AJ_P0033695 protein_coding nonsense_mediated_decay MGP_AJ_T0028269.1 MGP_AJ_G0018069.1 mouse_genomes_project 11 22528416 22572406 - 5730522E02Rik protein_coding processed_transcript MGP_AJ_T0028270.1 MGP_AJ_G0018069.1 mouse_genomes_project 11 22528469 22542866 - 5730522E02Rik protein_coding processed_transcript MGP_AJ_T0028271.1 MGP_AJ_G0018069.1 mouse_genomes_project 11 22540443 23133421 - 5730522E02Rik protein_coding processed_transcript MGP_AJ_T0028272.1 MGP_AJ_G0018069.1 mouse_genomes_project 11 22541854 23133424 - MGP_AJ_P0028272 5730522E02Rik protein_coding protein_coding MGP_AJ_T0028273.1 MGP_AJ_G0018069.1 mouse_genomes_project 11 22557893 22576338 - 5730522E02Rik protein_coding processed_transcript MGP_AJ_T0028274.1 MGP_AJ_G0018069.1 mouse_genomes_project 11 22572173 22702964 - MGP_AJ_P0028274 5730522E02Rik protein_coding protein_coding MGP_AJ_T0028275.1 MGP_AJ_G0018069.1 mouse_genomes_project 11 22777198 23007208 - 5730522E02Rik protein_coding processed_transcript MGP_AJ_T0028276.1 MGP_AJ_G0018069.1 mouse_genomes_project 11 23029358 23133615 - 5730522E02Rik protein_coding processed_transcript MGP_AJ_T0031287.1 MGP_AJ_G0018836.1 mouse_genomes_project 11 82575564 82666426 - MGP_AJ_P0031287 Aatf protein_coding protein_coding MGP_AJ_T0031288.1 MGP_AJ_G0018836.1 mouse_genomes_project 11 82575592 82644594 - Aatf protein_coding processed_transcript MGP_AJ_T0031289.1 MGP_AJ_G0018836.1 mouse_genomes_project 11 82595820 82602882 - Aatf protein_coding retained_intron MGP_AJ_T0031290.1 MGP_AJ_G0018836.1 mouse_genomes_project 11 82620226 82666426 - Aatf protein_coding retained_intron MGP_AJ_T0006198.1 MGP_AJ_G0005177.1 mouse_genomes_project 11 21823505 21845321 - Gm12665 lincRNA lincRNA MGP_AJ_T0006199.1 MGP_AJ_G0005177.1 mouse_genomes_project 11 21823505 21845329 - Gm12665 lincRNA lincRNA MGP_AJ_T0003172.1 MGP_AJ_G0002941.1 mouse_genomes_project 11 53003886 53016957 + Gm12236 antisense antisense MGP_AJ_T0030666.1 MGP_AJ_G0018683.1 mouse_genomes_project 11 73448765 73460807 + MGP_AJ_P0030666 Slc43a2 protein_coding protein_coding MGP_AJ_T0030667.1 MGP_AJ_G0018683.1 mouse_genomes_project 11 73448769 73495366 + MGP_AJ_P0030667 Slc43a2 protein_coding protein_coding MGP_AJ_T0030668.1 MGP_AJ_G0018683.1 mouse_genomes_project 11 73448769 73491357 + MGP_AJ_P0030668 Slc43a2 protein_coding protein_coding MGP_AJ_T0030669.1 MGP_AJ_G0018683.1 mouse_genomes_project 11 73448814 73463261 + MGP_AJ_P0030669 Slc43a2 protein_coding protein_coding MGP_AJ_T0030670.1 MGP_AJ_G0018683.1 mouse_genomes_project 11 73449183 73495361 + MGP_AJ_P0030670 Slc43a2 protein_coding protein_coding MGP_AJ_T0030671.1 MGP_AJ_G0018683.1 mouse_genomes_project 11 73449209 73463314 + MGP_AJ_P0030671 Slc43a2 protein_coding protein_coding MGP_AJ_T0030672.1 MGP_AJ_G0018683.1 mouse_genomes_project 11 73455491 73463248 + Slc43a2 protein_coding processed_transcript MGP_AJ_T0030673.1 MGP_AJ_G0018683.1 mouse_genomes_project 11 73478273 73484534 + Slc43a2 protein_coding retained_intron MGP_AJ_T0030674.1 MGP_AJ_G0018683.1 mouse_genomes_project 11 73483475 73487658 + Slc43a2 protein_coding processed_transcript MGP_AJ_T0030675.1 MGP_AJ_G0018683.1 mouse_genomes_project 11 73484169 73489886 + Slc43a2 protein_coding retained_intron MGP_AJ_T0030676.1 MGP_AJ_G0018683.1 mouse_genomes_project 11 73484282 73489264 + Slc43a2 protein_coding processed_transcript MGP_AJ_T0029296.1 MGP_AJ_G0018361.1 mouse_genomes_project 11 56771859 56774278 + MGP_AJ_P0029296 2310033P09Rik protein_coding protein_coding MGP_AJ_T0099306.1 MGP_AJ_G0037272.1 mouse_genomes_project 11 581521 581650 - Gm26393 snRNA snRNA MGP_AJ_T0030512.1 MGP_AJ_G0018629.1 mouse_genomes_project 11 71240794 71257724 + MGP_AJ_P0030512 Spata22 protein_coding unknown_likely_coding MGP_AJ_T0030513.1 MGP_AJ_G0018629.1 mouse_genomes_project 11 71242769 71267528 + MGP_AJ_P0030513 Spata22 protein_coding protein_coding MGP_AJ_T0006285.1 MGP_AJ_G0005249.1 mouse_genomes_project 11 77713707 77714498 + Gm11205 lincRNA lincRNA MGP_AJ_T0000840.1 MGP_AJ_G0000775.1 mouse_genomes_project 11 15766609 15769778 - TEC TEC MGP_AJ_T0012541.1 MGP_AJ_G0010636.1 mouse_genomes_project 11 24965159 24968240 + processed_pseudogene processed_pseudogene MGP_AJ_T0003271.1 MGP_AJ_G0003020.1 mouse_genomes_project 11 94283340 94285502 + Gm29202 antisense antisense MGP_AJ_T0100564.1 MGP_AJ_G0038530.1 mouse_genomes_project 11 2525239 2525369 - Gm22471 snoRNA snoRNA MGP_AJ_T0003340.1 MGP_AJ_G0003076.1 mouse_genomes_project 11 114213744 114215539 - Ict1os antisense antisense MGP_AJ_T0017260.1 MGP_AJ_G0015187.1 mouse_genomes_project 11 103137715 103145926 - Gm22000 processed_transcript processed_transcript MGP_AJ_T0003296.1 MGP_AJ_G0003038.1 mouse_genomes_project 11 99731861 99733394 - Gm11615 antisense antisense MGP_AJ_T0031791.1 MGP_AJ_G0018955.1 mouse_genomes_project 11 93983475 94044172 + MGP_AJ_P0031791 Zfp652 protein_coding protein_coding MGP_AJ_T0031792.1 MGP_AJ_G0018955.1 mouse_genomes_project 11 93983812 94104805 + MGP_AJ_P0031792 Zfp652 protein_coding nonsense_mediated_decay MGP_AJ_T0031794.1 MGP_AJ_G0018955.1 mouse_genomes_project 11 94020806 94044172 + MGP_AJ_P0031794 Zfp652 protein_coding nonsense_mediated_decay MGP_AJ_T0031795.1 MGP_AJ_G0018955.1 mouse_genomes_project 11 94020873 94036537 + MGP_AJ_P0031795 Zfp652 protein_coding protein_coding MGP_AJ_T0006374.1 MGP_AJ_G0005310.1 mouse_genomes_project 11 117974355 117978648 + Gm26508 lincRNA lincRNA MGP_AJ_T0003192.1 MGP_AJ_G0002958.1 mouse_genomes_project 11 60255251 60256352 + Gm12949 antisense antisense MGP_AJ_T0029404.1 MGP_AJ_G0018386.1 mouse_genomes_project 11 58007206 58042290 + MGP_AJ_P0029404 Gid4 protein_coding nonsense_mediated_decay MGP_AJ_T0029405.1 MGP_AJ_G0018386.1 mouse_genomes_project 11 58007323 58035398 + MGP_AJ_P0029405 Gid4 protein_coding protein_coding MGP_AJ_T0030591.1 MGP_AJ_G0018666.1 mouse_genomes_project 11 72764914 72805816 - MGP_AJ_P0030591 Sgsm2 protein_coding protein_coding MGP_AJ_T0030592.1 MGP_AJ_G0018666.1 mouse_genomes_project 11 72764919 72805816 - MGP_AJ_P0030592 Sgsm2 protein_coding protein_coding MGP_AJ_T0030593.1 MGP_AJ_G0018666.1 mouse_genomes_project 11 72772169 72776179 - Sgsm2 protein_coding retained_intron MGP_AJ_T0030594.1 MGP_AJ_G0018666.1 mouse_genomes_project 11 72783032 72784696 - Sgsm2 protein_coding retained_intron MGP_AJ_T0030595.1 MGP_AJ_G0018666.1 mouse_genomes_project 11 72783042 72783992 - Sgsm2 protein_coding retained_intron MGP_AJ_T0006301.1 MGP_AJ_G0005257.1 mouse_genomes_project 11 82873892 82877329 - 1700109G15Rik lincRNA lincRNA MGP_AJ_T0032521.1 MGP_AJ_G0019174.1 mouse_genomes_project 11 99970803 100036398 - MGP_AJ_P0032521 Brca1 protein_coding protein_coding MGP_AJ_T0032522.1 MGP_AJ_G0019174.1 mouse_genomes_project 11 99978924 99991319 - Brca1 protein_coding retained_intron MGP_AJ_T0032523.1 MGP_AJ_G0019174.1 mouse_genomes_project 11 99995627 100005333 - Brca1 protein_coding retained_intron MGP_AJ_T0032524.1 MGP_AJ_G0019174.1 mouse_genomes_project 11 100007066 100007732 - MGP_AJ_P0032524 Brca1 protein_coding protein_coding MGP_AJ_T0032525.1 MGP_AJ_G0019174.1 mouse_genomes_project 11 100007080 100008080 - Brca1 protein_coding processed_transcript MGP_AJ_T0032526.1 MGP_AJ_G0019174.1 mouse_genomes_project 11 100008380 100036474 - MGP_AJ_P0032526 Brca1 protein_coding nonsense_mediated_decay MGP_AJ_T0032527.1 MGP_AJ_G0019174.1 mouse_genomes_project 11 100014954 100036101 - MGP_AJ_P0032527 Brca1 protein_coding protein_coding MGP_AJ_T0009677.1 MGP_AJ_G0007799.1 mouse_genomes_project 11 47504783 47504845 + Mir6919 miRNA miRNA MGP_AJ_T0003356.1 MGP_AJ_G0003091.1 mouse_genomes_project 11 119120094 119122006 - Gm11770 antisense antisense MGP_AJ_T0006339.1 MGP_AJ_G0005283.1 mouse_genomes_project 11 101408369 101626010 + Gm26668 lincRNA lincRNA MGP_AJ_T0017256.1 MGP_AJ_G0015184.1 mouse_genomes_project 11 101814795 101817680 - 1700028N14Rik processed_transcript processed_transcript MGP_AJ_T0031982.1 MGP_AJ_G0019005.1 mouse_genomes_project 11 96026619 96036795 + MGP_AJ_P0031982 Psmb3 protein_coding protein_coding MGP_AJ_T0031983.1 MGP_AJ_G0019005.1 mouse_genomes_project 11 96026654 96031396 + Psmb3 protein_coding retained_intron MGP_AJ_T0031984.1 MGP_AJ_G0019005.1 mouse_genomes_project 11 96035374 96036795 + Psmb3 protein_coding retained_intron MGP_AJ_T0101706.1 MGP_AJ_G0039655.1 mouse_genomes_project 11 1513488 1514424 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0100595.1 MGP_AJ_G0038561.1 mouse_genomes_project 11 58489726 58489852 + Gm24945 snoRNA snoRNA MGP_AJ_T0032246.1 MGP_AJ_G0019103.1 mouse_genomes_project 11 98428903 98436084 - MGP_AJ_P0032246 Krt33b protein_coding protein_coding MGP_AJ_T0031096.1 MGP_AJ_G0018778.1 mouse_genomes_project 11 78391367 78408764 - MGP_AJ_P0031096 5730455P16Rik protein_coding protein_coding MGP_AJ_T0031097.1 MGP_AJ_G0018778.1 mouse_genomes_project 11 78391368 78408783 - MGP_AJ_P0031097 5730455P16Rik protein_coding protein_coding MGP_AJ_T0031098.1 MGP_AJ_G0018778.1 mouse_genomes_project 11 78394854 78399246 - 5730455P16Rik protein_coding retained_intron MGP_AJ_T0031099.1 MGP_AJ_G0018778.1 mouse_genomes_project 11 78401268 78408783 - MGP_AJ_P0031099 5730455P16Rik protein_coding protein_coding MGP_AJ_T0012733.1 MGP_AJ_G0010828.1 mouse_genomes_project 11 95407795 95408189 + processed_pseudogene processed_pseudogene MGP_AJ_T0033534.1 MGP_AJ_G0019379.1 mouse_genomes_project 11 114856179 114857332 - protein_coding processed_transcript MGP_AJ_T0031768.1 MGP_AJ_G0018949.1 mouse_genomes_project 11 93600532 93645839 + MGP_AJ_P0031768 Fam117a protein_coding protein_coding MGP_AJ_T0031769.1 MGP_AJ_G0018949.1 mouse_genomes_project 11 93600534 93639166 + Fam117a protein_coding processed_transcript MGP_AJ_T0031770.1 MGP_AJ_G0018949.1 mouse_genomes_project 11 93603446 93639595 + Fam117a protein_coding processed_transcript MGP_AJ_T0031771.1 MGP_AJ_G0018949.1 mouse_genomes_project 11 93603448 93628268 + Fam117a protein_coding processed_transcript MGP_AJ_T0031772.1 MGP_AJ_G0018949.1 mouse_genomes_project 11 93603477 93639170 + Fam117a protein_coding processed_transcript MGP_AJ_T0031773.1 MGP_AJ_G0018949.1 mouse_genomes_project 11 93639463 93641572 + Fam117a protein_coding processed_transcript MGP_AJ_T0030091.1 MGP_AJ_G0018540.1 mouse_genomes_project 11 67789359 67791505 + MGP_AJ_P0030091 Cldn7 protein_coding protein_coding MGP_AJ_T0030092.1 MGP_AJ_G0018540.1 mouse_genomes_project 11 67790040 67792425 + MGP_AJ_P0030092 Cldn7 protein_coding protein_coding MGP_AJ_T0030093.1 MGP_AJ_G0018540.1 mouse_genomes_project 11 67791453 67792188 + MGP_AJ_P0030093 Cldn7 protein_coding protein_coding MGP_AJ_T0102261.1 MGP_AJ_G0040004.1 mouse_genomes_project 11 98360662 98360902 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0031736.1 MGP_AJ_G0018941.1 mouse_genomes_project 11 93249505 93265395 + MGP_AJ_P0031736 Ppp1r9b protein_coding protein_coding MGP_AJ_T0031737.1 MGP_AJ_G0018941.1 mouse_genomes_project 11 93251349 93259835 + Ppp1r9b protein_coding processed_transcript MGP_AJ_T0031738.1 MGP_AJ_G0018941.1 mouse_genomes_project 11 93254554 93265395 + MGP_AJ_P0031738 Ppp1r9b protein_coding protein_coding MGP_AJ_T0101947.1 MGP_AJ_G0039791.1 mouse_genomes_project 11 71363136 71410493 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_AJ_T0101948.1 MGP_AJ_G0039791.1 mouse_genomes_project 11 71363338 71410510 - transcribed_unprocessed_pseudogene processed_transcript MGP_AJ_T0017201.1 MGP_AJ_G0015151.1 mouse_genomes_project 11 60335694 60337625 + 2410006H16Rik processed_transcript processed_transcript MGP_AJ_T0033676.1 MGP_AJ_G0019405.1 mouse_genomes_project 11 115530729 115552006 - MGP_AJ_P0033676 St6galnac2 protein_coding protein_coding MGP_AJ_T0033677.1 MGP_AJ_G0019405.1 mouse_genomes_project 11 115531596 115535529 - St6galnac2 protein_coding processed_transcript MGP_AJ_T0033678.1 MGP_AJ_G0019405.1 mouse_genomes_project 11 115533265 115537141 - St6galnac2 protein_coding processed_transcript MGP_AJ_T0033679.1 MGP_AJ_G0019405.1 mouse_genomes_project 11 115537538 115540748 - St6galnac2 protein_coding processed_transcript MGP_AJ_T0033680.1 MGP_AJ_G0019405.1 mouse_genomes_project 11 115540847 115541849 - St6galnac2 protein_coding processed_transcript MGP_AJ_T0033681.1 MGP_AJ_G0019405.1 mouse_genomes_project 11 115545929 115551747 - St6galnac2 protein_coding processed_transcript MGP_AJ_T0098547.1 MGP_AJ_G0036531.1 mouse_genomes_project 11 96620390 96620497 - n-R5s73 rRNA rRNA MGP_AJ_T0099325.1 MGP_AJ_G0037291.1 mouse_genomes_project 11 45073127 45073288 - Gm23039 snRNA snRNA MGP_AJ_T0032403.1 MGP_AJ_G0019145.1 mouse_genomes_project 11 99535686 99537803 + MGP_AJ_P0032403 Hsd17b1 protein_coding protein_coding MGP_AJ_T0006343.1 MGP_AJ_G0005287.1 mouse_genomes_project 11 108016572 108023235 + 1700096J18Rik lincRNA lincRNA MGP_AJ_T0006171.1 MGP_AJ_G0005151.1 mouse_genomes_project 11 1218925 1227011 + Gm11959 lincRNA lincRNA MGP_AJ_T0029959.1 MGP_AJ_G0018510.1 mouse_genomes_project 11 67448368 67469047 + MGP_AJ_P0029959 Fxr2 protein_coding protein_coding MGP_AJ_T0029960.1 MGP_AJ_G0018510.1 mouse_genomes_project 11 67455533 67456789 + Fxr2 protein_coding processed_transcript MGP_AJ_T0029961.1 MGP_AJ_G0018510.1 mouse_genomes_project 11 67458913 67465580 + Fxr2 protein_coding processed_transcript MGP_AJ_T0029962.1 MGP_AJ_G0018510.1 mouse_genomes_project 11 67465383 67466860 + Fxr2 protein_coding processed_transcript MGP_AJ_T0029963.1 MGP_AJ_G0018510.1 mouse_genomes_project 11 67466907 67467501 + Fxr2 protein_coding processed_transcript MGP_AJ_T0029964.1 MGP_AJ_G0018510.1 mouse_genomes_project 11 67468069 67468673 + Fxr2 protein_coding processed_transcript MGP_AJ_T0032836.1 MGP_AJ_G0019228.1 mouse_genomes_project 11 101756498 101766799 - MGP_AJ_P0032836 Spata32 protein_coding protein_coding MGP_AJ_T0100637.1 MGP_AJ_G0038603.1 mouse_genomes_project 11 118645024 118645104 + Gm23663 snoRNA snoRNA MGP_AJ_T0017259.1 MGP_AJ_G0015186.1 mouse_genomes_project 11 102286047 102286630 + Gm11642 processed_transcript processed_transcript MGP_AJ_T0099321.1 MGP_AJ_G0037287.1 mouse_genomes_project 11 32014842 32014949 + Gm25799 snRNA snRNA MGP_AJ_T0029188.1 MGP_AJ_G0018312.1 mouse_genomes_project 11 55579591 55599561 + MGP_AJ_P0029188 protein_coding unknown_likely_coding MGP_AJ_T0029189.1 MGP_AJ_G0018312.1 mouse_genomes_project 11 55585216 55592194 + MGP_AJ_P0029189 protein_coding protein_coding MGP_AJ_T0029190.1 MGP_AJ_G0018312.1 mouse_genomes_project 11 55594842 55599231 + protein_coding processed_transcript MGP_AJ_T0012695.1 MGP_AJ_G0010790.1 mouse_genomes_project 11 77907195 77907936 + processed_pseudogene processed_pseudogene MGP_AJ_T0032079.1 MGP_AJ_G0019028.1 mouse_genomes_project 11 96784547 96785831 - MGP_AJ_P0032079 Mien1 protein_coding protein_coding MGP_AJ_T0100574.1 MGP_AJ_G0038540.1 mouse_genomes_project 11 17765638 17765767 - Gm22807 snoRNA snoRNA MGP_AJ_T0030021.1 MGP_AJ_G0018523.1 mouse_genomes_project 11 67617034 67622657 - MGP_AJ_P0030021 Fgf11 protein_coding protein_coding MGP_AJ_T0030022.1 MGP_AJ_G0018523.1 mouse_genomes_project 11 67617039 67622798 - MGP_AJ_P0030022 Fgf11 protein_coding protein_coding MGP_AJ_T0033154.1 MGP_AJ_G0019298.1 mouse_genomes_project 11 107889376 107962448 - MGP_AJ_P0033154 Rgs9 protein_coding protein_coding MGP_AJ_T0033155.1 MGP_AJ_G0019298.1 mouse_genomes_project 11 107889382 107914685 - MGP_AJ_P0033155 Rgs9 protein_coding protein_coding MGP_AJ_T0033156.1 MGP_AJ_G0019298.1 mouse_genomes_project 11 107899078 107962385 - MGP_AJ_P0033156 Rgs9 protein_coding protein_coding MGP_AJ_T0033157.1 MGP_AJ_G0019298.1 mouse_genomes_project 11 107904067 107911499 - Rgs9 protein_coding processed_transcript MGP_AJ_T0033158.1 MGP_AJ_G0019298.1 mouse_genomes_project 11 107921080 107962425 - MGP_AJ_P0033158 Rgs9 protein_coding protein_coding MGP_AJ_T0029787.1 MGP_AJ_G0018472.1 mouse_genomes_project 11 66364554 66375759 + MGP_AJ_P0029787 Ccdc42 protein_coding protein_coding MGP_AJ_T0029788.1 MGP_AJ_G0018472.1 mouse_genomes_project 11 66364666 66375738 + MGP_AJ_P0029788 Ccdc42 protein_coding protein_coding MGP_AJ_T0029789.1 MGP_AJ_G0018472.1 mouse_genomes_project 11 66371576 66375747 + MGP_AJ_P0029789 Ccdc42 protein_coding protein_coding MGP_AJ_T0031784.1 MGP_AJ_G0018952.1 mouse_genomes_project 11 93777165 93781921 - MGP_AJ_P0031784 Nxph3 protein_coding protein_coding MGP_AJ_T0017245.1 MGP_AJ_G0015174.1 mouse_genomes_project 11 95329414 95335077 - Gm11532 processed_transcript processed_transcript MGP_AJ_T0028453.1 MGP_AJ_G0018107.1 mouse_genomes_project 11 29404016 29487116 + MGP_AJ_P0028453 Sh3pxd2b protein_coding protein_coding MGP_AJ_T0028454.1 MGP_AJ_G0018107.1 mouse_genomes_project 11 29404036 29448595 + Sh3pxd2b protein_coding retained_intron MGP_AJ_T0032452.1 MGP_AJ_G0019157.1 mouse_genomes_project 11 99719866 99726629 + MGP_AJ_P0032452 Vps25 protein_coding protein_coding MGP_AJ_T0032453.1 MGP_AJ_G0019157.1 mouse_genomes_project 11 99719866 99725129 + MGP_AJ_P0032453 Vps25 protein_coding protein_coding MGP_AJ_T0032454.1 MGP_AJ_G0019157.1 mouse_genomes_project 11 99719888 99726625 + MGP_AJ_P0032454 Vps25 protein_coding protein_coding MGP_AJ_T0032455.1 MGP_AJ_G0019157.1 mouse_genomes_project 11 99719889 99725996 + MGP_AJ_P0032455 Vps25 protein_coding nonsense_mediated_decay MGP_AJ_T0032456.1 MGP_AJ_G0019157.1 mouse_genomes_project 11 99719894 99726403 + MGP_AJ_P0032456 Vps25 protein_coding protein_coding MGP_AJ_T0032457.1 MGP_AJ_G0019157.1 mouse_genomes_project 11 99719912 99726136 + MGP_AJ_P0032457 Vps25 protein_coding protein_coding MGP_AJ_T0032458.1 MGP_AJ_G0019157.1 mouse_genomes_project 11 99719923 99726290 + Vps25 protein_coding retained_intron MGP_AJ_T0029010.1 MGP_AJ_G0018265.1 mouse_genomes_project 11 50877969 50881671 - MGP_AJ_P0029010 Sowaha protein_coding protein_coding MGP_AJ_T0003234.1 MGP_AJ_G0002993.1 mouse_genomes_project 11 77613939 77630149 - Rab11fip4os1 antisense antisense MGP_AJ_T0003338.1 MGP_AJ_G0003075.1 mouse_genomes_project 11 112952576 112953914 - 1700001J04Rik antisense antisense MGP_AJ_T0003339.1 MGP_AJ_G0003075.1 mouse_genomes_project 11 112953109 112953811 - 1700001J04Rik antisense antisense MGP_AJ_T0003218.1 MGP_AJ_G0002979.1 mouse_genomes_project 11 67128667 67130961 - Kcnab3os antisense antisense MGP_AJ_T0098822.1 MGP_AJ_G0036806.1 mouse_genomes_project 11 115916390 115916583 + Gm26083 scaRNA scaRNA MGP_AJ_T0009766.1 MGP_AJ_G0007888.1 mouse_genomes_project 11 115916495 115916605 + Mir6516 miRNA miRNA MGP_AJ_T0003208.1 MGP_AJ_G0002971.1 mouse_genomes_project 11 64660091 64701871 - Gm12298 antisense antisense MGP_AJ_T0030291.1 MGP_AJ_G0018579.1 mouse_genomes_project 11 68518341 68523987 - MGP_AJ_P0030291 Spag7 protein_coding protein_coding MGP_AJ_T0030292.1 MGP_AJ_G0018579.1 mouse_genomes_project 11 68518573 68523789 - Spag7 protein_coding retained_intron MGP_AJ_T0030293.1 MGP_AJ_G0018579.1 mouse_genomes_project 11 68518910 68523850 - Spag7 protein_coding retained_intron MGP_AJ_T0030294.1 MGP_AJ_G0018579.1 mouse_genomes_project 11 68518969 68523861 - MGP_AJ_P0030294 Spag7 protein_coding protein_coding MGP_AJ_T0031796.1 MGP_AJ_G0018957.1 mouse_genomes_project 11 94094609 94100404 + MGP_AJ_P0031796 Phospho1 protein_coding protein_coding MGP_AJ_T0031797.1 MGP_AJ_G0018957.1 mouse_genomes_project 11 94094610 94101844 + MGP_AJ_P0031797 Phospho1 protein_coding protein_coding MGP_AJ_T0031799.1 MGP_AJ_G0018957.1 mouse_genomes_project 11 94100465 94101295 + MGP_AJ_P0031799 Phospho1 protein_coding protein_coding MGP_AJ_T0032090.1 MGP_AJ_G0019031.1 mouse_genomes_project 11 96899122 96906791 + MGP_AJ_P0032090 Zpbp2 protein_coding protein_coding MGP_AJ_T0032091.1 MGP_AJ_G0019031.1 mouse_genomes_project 11 96899155 96906791 + MGP_AJ_P0032091 Zpbp2 protein_coding protein_coding MGP_AJ_T0032092.1 MGP_AJ_G0019031.1 mouse_genomes_project 11 96899175 96906782 + MGP_AJ_P0032092 Zpbp2 protein_coding protein_coding MGP_AJ_T0032093.1 MGP_AJ_G0019031.1 mouse_genomes_project 11 96899177 96906782 + MGP_AJ_P0032093 Zpbp2 protein_coding protein_coding MGP_AJ_T0032094.1 MGP_AJ_G0019031.1 mouse_genomes_project 11 96899203 96906659 + MGP_AJ_P0032094 Zpbp2 protein_coding protein_coding MGP_AJ_T0032095.1 MGP_AJ_G0019031.1 mouse_genomes_project 11 96903568 96906511 + Zpbp2 protein_coding processed_transcript MGP_AJ_T0098536.1 MGP_AJ_G0036520.1 mouse_genomes_project 11 24005001 24005083 + n-R5s68 rRNA rRNA MGP_AJ_T0030923.1 MGP_AJ_G0018733.1 mouse_genomes_project 11 76139718 76141864 - Rpl23a protein_coding retained_intron MGP_AJ_T0030924.1 MGP_AJ_G0018733.1 mouse_genomes_project 11 76139721 76140417 - Rpl23a protein_coding retained_intron MGP_AJ_T0030925.1 MGP_AJ_G0018733.1 mouse_genomes_project 11 76139721 76142371 - MGP_AJ_P0030925 Rpl23a protein_coding protein_coding MGP_AJ_T0031016.1 MGP_AJ_G0018757.1 mouse_genomes_project 11 76809388 76829665 + MGP_AJ_P0031016 Lyrm9 protein_coding protein_coding MGP_AJ_T0031017.1 MGP_AJ_G0018757.1 mouse_genomes_project 11 76809408 76821051 + MGP_AJ_P0031017 Lyrm9 protein_coding protein_coding MGP_AJ_T0031018.1 MGP_AJ_G0018757.1 mouse_genomes_project 11 76809433 76822070 + Lyrm9 protein_coding processed_transcript MGP_AJ_T0009746.1 MGP_AJ_G0007868.1 mouse_genomes_project 11 98891510 98891591 - Gm27374 miRNA miRNA MGP_AJ_T0012507.1 MGP_AJ_G0010602.1 mouse_genomes_project 11 16633312 16633939 - processed_pseudogene processed_pseudogene MGP_AJ_T0099308.1 MGP_AJ_G0037274.1 mouse_genomes_project 11 2212960 2213067 + Gm25142 snRNA snRNA MGP_AJ_T0032265.1 MGP_AJ_G0019114.1 mouse_genomes_project 11 98675759 98679451 - MGP_AJ_P0032265 Krt16 protein_coding protein_coding MGP_AJ_T0006363.1 MGP_AJ_G0005302.1 mouse_genomes_project 11 114817804 114823427 - B230344G16Rik lincRNA lincRNA MGP_AJ_T0032019.1 MGP_AJ_G0019013.1 mouse_genomes_project 11 96256991 96319290 - MGP_AJ_P0032019 Plxdc1 protein_coding protein_coding MGP_AJ_T0032020.1 MGP_AJ_G0019013.1 mouse_genomes_project 11 96257409 96319245 - MGP_AJ_P0032020 Plxdc1 protein_coding protein_coding MGP_AJ_T0032021.1 MGP_AJ_G0019013.1 mouse_genomes_project 11 96270477 96319279 - Plxdc1 protein_coding processed_transcript MGP_AJ_T0032022.1 MGP_AJ_G0019013.1 mouse_genomes_project 11 96311149 96319276 - MGP_AJ_P0032022 Plxdc1 protein_coding protein_coding MGP_AJ_T0033802.1 MGP_AJ_G0019433.1 mouse_genomes_project 11 117219065 117229088 - MGP_AJ_P0033802 BC100451 protein_coding protein_coding MGP_AJ_T0033803.1 MGP_AJ_G0019433.1 mouse_genomes_project 11 117219120 117220722 - MGP_AJ_P0033803 BC100451 protein_coding protein_coding MGP_AJ_T0028984.1 MGP_AJ_G0018257.1 mouse_genomes_project 11 50723849 50732478 + MGP_AJ_P0028984 Zcchc10 protein_coding protein_coding MGP_AJ_T0028985.1 MGP_AJ_G0018257.1 mouse_genomes_project 11 50726570 50731656 + MGP_AJ_P0028985 Zcchc10 protein_coding nonsense_mediated_decay MGP_AJ_T0031444.1 MGP_AJ_G0018872.1 mouse_genomes_project 11 85750089 85752687 + MGP_AJ_P0031444 Gm11492 protein_coding protein_coding MGP_AJ_T0012511.1 MGP_AJ_G0010606.1 mouse_genomes_project 11 17375424 17376162 + processed_pseudogene processed_pseudogene MGP_AJ_T0033756.1 MGP_AJ_G0019421.1 mouse_genomes_project 11 116680698 116684470 + MGP_AJ_P0033756 Syngr2 protein_coding nonsense_mediated_decay MGP_AJ_T0033757.1 MGP_AJ_G0019421.1 mouse_genomes_project 11 116680701 116685305 + MGP_AJ_P0033757 Syngr2 protein_coding protein_coding MGP_AJ_T0033758.1 MGP_AJ_G0019421.1 mouse_genomes_project 11 116680710 116685314 + MGP_AJ_P0033758 Syngr2 protein_coding protein_coding MGP_AJ_T0033759.1 MGP_AJ_G0019421.1 mouse_genomes_project 11 116683252 116684113 + MGP_AJ_P0033759 Syngr2 protein_coding protein_coding MGP_AJ_T0033760.1 MGP_AJ_G0019421.1 mouse_genomes_project 11 116683985 116684407 + Syngr2 protein_coding retained_intron MGP_AJ_T0003289.1 MGP_AJ_G0003034.1 mouse_genomes_project 11 97784531 97785326 + A830036E02Rik antisense antisense MGP_AJ_T0003290.1 MGP_AJ_G0003034.1 mouse_genomes_project 11 97784818 97790653 + A830036E02Rik antisense antisense MGP_AJ_T0003291.1 MGP_AJ_G0003034.1 mouse_genomes_project 11 97784823 97785869 + A830036E02Rik antisense antisense MGP_AJ_T0003292.1 MGP_AJ_G0003034.1 mouse_genomes_project 11 97787545 97793052 + A830036E02Rik antisense antisense MGP_AJ_T0017156.1 MGP_AJ_G0015127.1 mouse_genomes_project 11 8615186 8658683 - Gm11999 processed_transcript processed_transcript MGP_AJ_T0029477.1 MGP_AJ_G0018404.1 mouse_genomes_project 11 58914942 58958887 - MGP_AJ_P0029477 Aldh3a2 protein_coding protein_coding MGP_AJ_T0029478.1 MGP_AJ_G0018404.1 mouse_genomes_project 11 58936378 58958887 - MGP_AJ_P0029478 Aldh3a2 protein_coding protein_coding MGP_AJ_T0029479.1 MGP_AJ_G0018404.1 mouse_genomes_project 11 58939052 58958887 - MGP_AJ_P0029479 Aldh3a2 protein_coding protein_coding MGP_AJ_T0029480.1 MGP_AJ_G0018404.1 mouse_genomes_project 11 58940597 58954037 - Aldh3a2 protein_coding processed_transcript MGP_AJ_T0029481.1 MGP_AJ_G0018404.1 mouse_genomes_project 11 58948365 58959166 - Aldh3a2 protein_coding processed_transcript MGP_AJ_T0029482.1 MGP_AJ_G0018404.1 mouse_genomes_project 11 58955871 58958829 - Aldh3a2 protein_coding processed_transcript MGP_AJ_T0029483.1 MGP_AJ_G0018404.1 mouse_genomes_project 11 58956925 58959143 - Aldh3a2 protein_coding processed_transcript MGP_AJ_T0028532.1 MGP_AJ_G0018133.1 mouse_genomes_project 11 37847039 37860460 - MGP_AJ_P0028532 Mat2b protein_coding protein_coding MGP_AJ_T0028533.1 MGP_AJ_G0018133.1 mouse_genomes_project 11 37847039 37862886 - MGP_AJ_P0028533 Mat2b protein_coding protein_coding MGP_AJ_T0028534.1 MGP_AJ_G0018133.1 mouse_genomes_project 11 37848382 37860307 - MGP_AJ_P0028534 Mat2b protein_coding nonsense_mediated_decay MGP_AJ_T0028535.1 MGP_AJ_G0018133.1 mouse_genomes_project 11 37848436 37852971 - Mat2b protein_coding retained_intron MGP_AJ_T0028536.1 MGP_AJ_G0018133.1 mouse_genomes_project 11 37852450 37853564 - Mat2b protein_coding retained_intron MGP_AJ_T0028537.1 MGP_AJ_G0018133.1 mouse_genomes_project 11 37853229 37860314 - Mat2b protein_coding retained_intron MGP_AJ_T0028538.1 MGP_AJ_G0018133.1 mouse_genomes_project 11 37855083 37862670 - Mat2b protein_coding retained_intron MGP_AJ_T0006259.1 MGP_AJ_G0005229.1 mouse_genomes_project 11 63044868 63055791 - Gm12295 lincRNA lincRNA MGP_AJ_T0006260.1 MGP_AJ_G0005229.1 mouse_genomes_project 11 63053895 63133584 - Gm12295 lincRNA lincRNA MGP_AJ_T0012499.1 MGP_AJ_G0010594.1 mouse_genomes_project 11 14540807 14541489 - processed_pseudogene processed_pseudogene MGP_AJ_T0034155.1 MGP_AJ_G0019499.1 mouse_genomes_project 11 119738190 119845796 - MGP_AJ_P0034155 Ccdc57 protein_coding protein_coding MGP_AJ_T0034156.1 MGP_AJ_G0019499.1 mouse_genomes_project 11 119738203 119789811 - Ccdc57 protein_coding processed_transcript MGP_AJ_T0034157.1 MGP_AJ_G0019499.1 mouse_genomes_project 11 119789931 119803130 - Ccdc57 protein_coding processed_transcript MGP_AJ_T0003294.1 MGP_AJ_G0003036.1 mouse_genomes_project 11 98713941 98726727 - Gm14206 antisense antisense MGP_AJ_T0027910.1 MGP_AJ_G0017984.1 mouse_genomes_project 11 2866530 2868675 - MGP_AJ_P0027910 Myl7 protein_coding protein_coding MGP_AJ_T0032655.1 MGP_AJ_G0019197.1 mouse_genomes_project 11 100798891 100803198 + MGP_AJ_P0032655 Tmub2 protein_coding protein_coding MGP_AJ_T0032656.1 MGP_AJ_G0019197.1 mouse_genomes_project 11 100798899 100802172 + Tmub2 protein_coding processed_transcript MGP_AJ_T0032657.1 MGP_AJ_G0019197.1 mouse_genomes_project 11 100798899 100803198 + MGP_AJ_P0032657 Tmub2 protein_coding protein_coding MGP_AJ_T0032658.1 MGP_AJ_G0019197.1 mouse_genomes_project 11 100798911 100801352 + Tmub2 protein_coding processed_transcript MGP_AJ_T0032659.1 MGP_AJ_G0019197.1 mouse_genomes_project 11 100799156 100803198 + MGP_AJ_P0032659 Tmub2 protein_coding protein_coding MGP_AJ_T0031550.1 MGP_AJ_G0018896.1 mouse_genomes_project 11 87195320 87216464 + MGP_AJ_P0031550 Coil protein_coding protein_coding MGP_AJ_T0031551.1 MGP_AJ_G0018896.1 mouse_genomes_project 11 87198866 87216464 + MGP_AJ_P0031551 Coil protein_coding protein_coding MGP_AJ_T0031552.1 MGP_AJ_G0018896.1 mouse_genomes_project 11 87212052 87215805 + Coil protein_coding retained_intron MGP_AJ_T0029676.1 MGP_AJ_G0018443.1 mouse_genomes_project 11 62759393 62924813 - MGP_AJ_P0029676 Arhgap44 protein_coding protein_coding MGP_AJ_T0029677.1 MGP_AJ_G0018443.1 mouse_genomes_project 11 62759396 62925136 - MGP_AJ_P0029677 Arhgap44 protein_coding protein_coding MGP_AJ_T0029678.1 MGP_AJ_G0018443.1 mouse_genomes_project 11 62759397 62925079 - MGP_AJ_P0029678 Arhgap44 protein_coding protein_coding MGP_AJ_T0029679.1 MGP_AJ_G0018443.1 mouse_genomes_project 11 62811502 62924742 - MGP_AJ_P0029679 Arhgap44 protein_coding protein_coding MGP_AJ_T0032660.1 MGP_AJ_G0019198.1 mouse_genomes_project 11 100803260 100807405 - Atxn7l3 protein_coding retained_intron MGP_AJ_T0032661.1 MGP_AJ_G0019198.1 mouse_genomes_project 11 100803260 100809273 - MGP_AJ_P0032661 Atxn7l3 protein_coding protein_coding MGP_AJ_T0032662.1 MGP_AJ_G0019198.1 mouse_genomes_project 11 100803260 100810592 - MGP_AJ_P0032662 Atxn7l3 protein_coding protein_coding MGP_AJ_T0032663.1 MGP_AJ_G0019198.1 mouse_genomes_project 11 100803260 100808948 - MGP_AJ_P0032663 Atxn7l3 protein_coding protein_coding MGP_AJ_T0032664.1 MGP_AJ_G0019198.1 mouse_genomes_project 11 100803260 100808124 - MGP_AJ_P0032664 Atxn7l3 protein_coding protein_coding MGP_AJ_T0032665.1 MGP_AJ_G0019198.1 mouse_genomes_project 11 100803261 100810590 - MGP_AJ_P0032665 Atxn7l3 protein_coding protein_coding MGP_AJ_T0027952.1 MGP_AJ_G0017994.1 mouse_genomes_project 11 3356098 3373178 + MGP_AJ_P0027952 Zmiz2 protein_coding protein_coding MGP_AJ_T0027953.1 MGP_AJ_G0017994.1 mouse_genomes_project 11 3356388 3373178 + MGP_AJ_P0027953 Zmiz2 protein_coding protein_coding MGP_AJ_T0027954.1 MGP_AJ_G0017994.1 mouse_genomes_project 11 3356495 3373178 + MGP_AJ_P0027954 Zmiz2 protein_coding protein_coding MGP_AJ_T0027955.1 MGP_AJ_G0017994.1 mouse_genomes_project 11 3362200 3373094 + MGP_AJ_P0027955 Zmiz2 protein_coding protein_coding MGP_AJ_T0027956.1 MGP_AJ_G0017994.1 mouse_genomes_project 11 3362617 3372950 + MGP_AJ_P0027956 Zmiz2 protein_coding protein_coding MGP_AJ_T0027957.1 MGP_AJ_G0017994.1 mouse_genomes_project 11 3363740 3364860 + Zmiz2 protein_coding retained_intron MGP_AJ_T0028852.1 MGP_AJ_G0018220.1 mouse_genomes_project 11 48095146 48111790 - MGP_AJ_P0028852 Zfp354c protein_coding protein_coding MGP_AJ_T0028853.1 MGP_AJ_G0018220.1 mouse_genomes_project 11 48098624 48110558 - MGP_AJ_P0028853 Zfp354c protein_coding protein_coding MGP_AJ_T0028854.1 MGP_AJ_G0018220.1 mouse_genomes_project 11 48101253 48111786 - Zfp354c protein_coding processed_transcript MGP_AJ_T0028855.1 MGP_AJ_G0018220.1 mouse_genomes_project 11 48110375 48111824 - Zfp354c protein_coding processed_transcript MGP_AJ_T0032043.1 MGP_AJ_G0019019.1 mouse_genomes_project 11 96488933 96540137 - MGP_AJ_P0032043 Med1 protein_coding protein_coding MGP_AJ_T0032044.1 MGP_AJ_G0019019.1 mouse_genomes_project 11 96488936 96540314 - MGP_AJ_P0032044 Med1 protein_coding protein_coding MGP_AJ_T0032045.1 MGP_AJ_G0019019.1 mouse_genomes_project 11 96489793 96500743 - Med1 protein_coding processed_transcript MGP_AJ_T0032046.1 MGP_AJ_G0019019.1 mouse_genomes_project 11 96494538 96497808 - Med1 protein_coding processed_transcript MGP_AJ_T0032047.1 MGP_AJ_G0019019.1 mouse_genomes_project 11 96506148 96516767 - Med1 protein_coding processed_transcript MGP_AJ_T0032048.1 MGP_AJ_G0019019.1 mouse_genomes_project 11 96506696 96540330 - Med1 protein_coding processed_transcript MGP_AJ_T0098544.1 MGP_AJ_G0036528.1 mouse_genomes_project 11 83951709 83951825 + Gm23473 rRNA rRNA MGP_AJ_T0003182.1 MGP_AJ_G0002950.1 mouse_genomes_project 11 57351016 57356135 - Gm12264 antisense antisense MGP_AJ_T0027725.1 MGP_AJ_G0017943.1 mouse_genomes_project 11 916170 931572 + MGP_AJ_P0027725 Gal3st1 protein_coding protein_coding MGP_AJ_T0027726.1 MGP_AJ_G0017943.1 mouse_genomes_project 11 916247 931561 + MGP_AJ_P0027726 Gal3st1 protein_coding protein_coding MGP_AJ_T0027727.1 MGP_AJ_G0017943.1 mouse_genomes_project 11 922442 931554 + MGP_AJ_P0027727 Gal3st1 protein_coding protein_coding MGP_AJ_T0009756.1 MGP_AJ_G0007878.1 mouse_genomes_project 11 103002942 103003087 - miRNA miRNA MGP_AJ_T0017262.1 MGP_AJ_G0015189.1 mouse_genomes_project 11 106073901 106081567 + Gm11714 processed_transcript processed_transcript MGP_AJ_T0031371.1 MGP_AJ_G0018854.1 mouse_genomes_project 11 84377720 84425446 - MGP_AJ_P0031371 Ints2 protein_coding protein_coding MGP_AJ_T0031372.1 MGP_AJ_G0018854.1 mouse_genomes_project 11 84379127 84424442 - MGP_AJ_P0031372 Ints2 protein_coding protein_coding MGP_AJ_T0031373.1 MGP_AJ_G0018854.1 mouse_genomes_project 11 84384851 84396480 - MGP_AJ_P0031373 Ints2 protein_coding nonsense_mediated_decay MGP_AJ_T0031374.1 MGP_AJ_G0018854.1 mouse_genomes_project 11 84392168 84399423 - Ints2 protein_coding retained_intron MGP_AJ_T0031375.1 MGP_AJ_G0018854.1 mouse_genomes_project 11 84401794 84425437 - Ints2 protein_coding retained_intron MGP_AJ_T0031376.1 MGP_AJ_G0018854.1 mouse_genomes_project 11 84402734 84405989 - Ints2 protein_coding retained_intron MGP_AJ_T0031377.1 MGP_AJ_G0018854.1 mouse_genomes_project 11 84418754 84425471 - MGP_AJ_P0031377 Ints2 protein_coding protein_coding MGP_AJ_T0031378.1 MGP_AJ_G0018854.1 mouse_genomes_project 11 84423222 84425450 - MGP_AJ_P0031378 Ints2 protein_coding protein_coding MGP_AJ_T0031379.1 MGP_AJ_G0018854.1 mouse_genomes_project 11 84423921 84425414 - MGP_AJ_P0031379 Ints2 protein_coding protein_coding MGP_AJ_T0031380.1 MGP_AJ_G0018854.1 mouse_genomes_project 11 84424248 84425236 - Ints2 protein_coding retained_intron MGP_AJ_T0031381.1 MGP_AJ_G0018854.1 mouse_genomes_project 11 84424338 84425461 - Ints2 protein_coding processed_transcript MGP_AJ_T0028635.1 MGP_AJ_G0018158.1 mouse_genomes_project 11 43113889 43122546 - MGP_AJ_P0028635 Thg1l protein_coding protein_coding MGP_AJ_T0028636.1 MGP_AJ_G0018158.1 mouse_genomes_project 11 43113889 43122240 - MGP_AJ_P0028636 Thg1l protein_coding protein_coding MGP_AJ_T0028637.1 MGP_AJ_G0018158.1 mouse_genomes_project 11 43117242 43121467 - Thg1l protein_coding processed_transcript MGP_AJ_T0028638.1 MGP_AJ_G0018158.1 mouse_genomes_project 11 43118224 43122209 - Thg1l protein_coding processed_transcript MGP_AJ_T0028639.1 MGP_AJ_G0018158.1 mouse_genomes_project 11 43121317 43122535 - Thg1l protein_coding processed_transcript MGP_AJ_T0033419.1 MGP_AJ_G0019362.1 mouse_genomes_project 11 114380914 114400835 + MGP_AJ_P0033419 Nup85 protein_coding protein_coding MGP_AJ_T0033420.1 MGP_AJ_G0019362.1 mouse_genomes_project 11 114381005 114386372 + Nup85 protein_coding processed_transcript MGP_AJ_T0033421.1 MGP_AJ_G0019362.1 mouse_genomes_project 11 114386595 114398693 + MGP_AJ_P0033421 Nup85 protein_coding protein_coding MGP_AJ_T0033422.1 MGP_AJ_G0019362.1 mouse_genomes_project 11 114393893 114398889 + MGP_AJ_P0033422 Nup85 protein_coding protein_coding MGP_AJ_T0033423.1 MGP_AJ_G0019362.1 mouse_genomes_project 11 114397353 114398269 + Nup85 protein_coding processed_transcript MGP_AJ_T0033424.1 MGP_AJ_G0019362.1 mouse_genomes_project 11 114397945 114398884 + Nup85 protein_coding processed_transcript MGP_AJ_T0033425.1 MGP_AJ_G0019362.1 mouse_genomes_project 11 114398490 114400756 + Nup85 protein_coding processed_transcript MGP_AJ_T0033426.1 MGP_AJ_G0019362.1 mouse_genomes_project 11 114398597 114399128 + Nup85 protein_coding processed_transcript MGP_AJ_T0033427.1 MGP_AJ_G0019362.1 mouse_genomes_project 11 114399906 114400633 + Nup85 protein_coding processed_transcript MGP_AJ_T0011303.1 MGP_AJ_G0009425.1 mouse_genomes_project 11 65129974 65130287 + Gm26476 misc_RNA misc_RNA MGP_AJ_T0027677.1 MGP_AJ_G0017932.1 mouse_genomes_project 11 412008 422452 - MGP_AJ_P0027677 Inpp5j protein_coding protein_coding MGP_AJ_T0027678.1 MGP_AJ_G0017932.1 mouse_genomes_project 11 412015 422402 - MGP_AJ_P0027678 Inpp5j protein_coding nonsense_mediated_decay MGP_AJ_T0027679.1 MGP_AJ_G0017932.1 mouse_genomes_project 11 412015 422405 - MGP_AJ_P0027679 Inpp5j protein_coding non_stop_decay MGP_AJ_T0027680.1 MGP_AJ_G0017932.1 mouse_genomes_project 11 412015 419765 - MGP_AJ_P0027680 Inpp5j protein_coding protein_coding MGP_AJ_T0027681.1 MGP_AJ_G0017932.1 mouse_genomes_project 11 412180 422417 - MGP_AJ_P0027681 Inpp5j protein_coding nonsense_mediated_decay MGP_AJ_T0027682.1 MGP_AJ_G0017932.1 mouse_genomes_project 11 416582 422430 - MGP_AJ_P0027682 Inpp5j protein_coding nonsense_mediated_decay MGP_AJ_T0034083.1 MGP_AJ_G0019487.1 mouse_genomes_project 11 119555976 119558104 - MGP_AJ_P0034083 Myadml2 protein_coding protein_coding MGP_AJ_T0034084.1 MGP_AJ_G0019487.1 mouse_genomes_project 11 119555977 119557028 - Myadml2 protein_coding processed_transcript MGP_AJ_T0006316.1 MGP_AJ_G0005268.1 mouse_genomes_project 11 88346958 88355659 - Gm11494 lincRNA lincRNA MGP_AJ_T0099333.1 MGP_AJ_G0037299.1 mouse_genomes_project 11 59655957 59656064 - Gm23721 snRNA snRNA MGP_AJ_T0031248.1 MGP_AJ_G0018827.1 mouse_genomes_project 11 81879885 81885590 + MGP_AJ_P0031248 Wfdc21 protein_coding protein_coding MGP_AJ_T0100606.1 MGP_AJ_G0038572.1 mouse_genomes_project 11 69747030 69747161 - Gm22927 snoRNA snoRNA MGP_AJ_T0012791.1 MGP_AJ_G0010886.1 mouse_genomes_project 11 119698276 119700724 + processed_pseudogene processed_pseudogene MGP_AJ_T0031714.1 MGP_AJ_G0018934.1 mouse_genomes_project 11 92893587 92907339 - MGP_AJ_P0031714 Xylt2 protein_coding protein_coding MGP_AJ_T0031715.1 MGP_AJ_G0018934.1 mouse_genomes_project 11 92894323 92907339 - MGP_AJ_P0031715 Xylt2 protein_coding nonsense_mediated_decay MGP_AJ_T0031716.1 MGP_AJ_G0018934.1 mouse_genomes_project 11 92895942 92897910 - MGP_AJ_P0031716 Xylt2 protein_coding protein_coding MGP_AJ_T0031717.1 MGP_AJ_G0018934.1 mouse_genomes_project 11 92896587 92897520 - Xylt2 protein_coding retained_intron MGP_AJ_T0031718.1 MGP_AJ_G0018934.1 mouse_genomes_project 11 92898242 92907231 - MGP_AJ_P0031718 Xylt2 protein_coding nonsense_mediated_decay MGP_AJ_T0031719.1 MGP_AJ_G0018934.1 mouse_genomes_project 11 92905784 92907237 - Xylt2 protein_coding processed_transcript MGP_AJ_T0009652.1 MGP_AJ_G0007774.1 mouse_genomes_project 11 1995484 1995588 + miRNA miRNA MGP_AJ_T0003221.1 MGP_AJ_G0002982.1 mouse_genomes_project 11 67499085 67507688 + Tnfsf13os antisense antisense MGP_AJ_T0003222.1 MGP_AJ_G0002982.1 mouse_genomes_project 11 67501277 67508065 + Tnfsf13os antisense antisense MGP_AJ_T0003223.1 MGP_AJ_G0002982.1 mouse_genomes_project 11 67501449 67508065 + Tnfsf13os antisense antisense MGP_AJ_T0099363.1 MGP_AJ_G0037329.1 mouse_genomes_project 11 91647995 91648102 - Gm24856 snRNA snRNA MGP_AJ_T0003328.1 MGP_AJ_G0003068.1 mouse_genomes_project 11 107176977 107181547 - Cep112os1 antisense antisense MGP_AJ_T0034193.1 MGP_AJ_G0019509.1 mouse_genomes_project 11 120123758 120140902 + MGP_AJ_P0034193 Hexdc protein_coding protein_coding MGP_AJ_T0034194.1 MGP_AJ_G0019509.1 mouse_genomes_project 11 120123760 120140894 + MGP_AJ_P0034194 Hexdc protein_coding protein_coding MGP_AJ_T0034195.1 MGP_AJ_G0019509.1 mouse_genomes_project 11 120124100 120137382 + Hexdc protein_coding processed_transcript MGP_AJ_T0034196.1 MGP_AJ_G0019509.1 mouse_genomes_project 11 120124126 120132804 + Hexdc protein_coding processed_transcript MGP_AJ_T0034197.1 MGP_AJ_G0019509.1 mouse_genomes_project 11 120125437 120140894 + MGP_AJ_P0034197 Hexdc protein_coding protein_coding MGP_AJ_T0034198.1 MGP_AJ_G0019509.1 mouse_genomes_project 11 120129784 120139276 + MGP_AJ_P0034198 Hexdc protein_coding protein_coding MGP_AJ_T0006213.1 MGP_AJ_G0005186.1 mouse_genomes_project 11 29138788 29144755 - Gm12108 lincRNA lincRNA MGP_AJ_T0032036.1 MGP_AJ_G0019018.1 mouse_genomes_project 11 96419083 96486390 - MGP_AJ_P0032036 Fbxl20 protein_coding protein_coding MGP_AJ_T0032037.1 MGP_AJ_G0019018.1 mouse_genomes_project 11 96427494 96486384 - Fbxl20 protein_coding retained_intron MGP_AJ_T0032038.1 MGP_AJ_G0019018.1 mouse_genomes_project 11 96431868 96436663 - MGP_AJ_P0032038 Fbxl20 protein_coding protein_coding MGP_AJ_T0032039.1 MGP_AJ_G0019018.1 mouse_genomes_project 11 96435021 96487194 - MGP_AJ_P0032039 Fbxl20 protein_coding protein_coding MGP_AJ_T0032040.1 MGP_AJ_G0019018.1 mouse_genomes_project 11 96438338 96465857 - Fbxl20 protein_coding processed_transcript MGP_AJ_T0032041.1 MGP_AJ_G0019018.1 mouse_genomes_project 11 96446113 96465857 - MGP_AJ_P0032041 Fbxl20 protein_coding protein_coding MGP_AJ_T0032042.1 MGP_AJ_G0019018.1 mouse_genomes_project 11 96464876 96465841 - Fbxl20 protein_coding processed_transcript MGP_AJ_T0032239.1 MGP_AJ_G0019096.1 mouse_genomes_project 11 98309268 98310193 + MGP_AJ_P0032239 Gm11565 protein_coding protein_coding MGP_AJ_T0029935.1 MGP_AJ_G0018503.1 mouse_genomes_project 11 67222904 67356325 - MGP_AJ_P0029935 Dnah2 protein_coding protein_coding MGP_AJ_T0029936.1 MGP_AJ_G0018503.1 mouse_genomes_project 11 67222904 67360881 - MGP_AJ_P0029936 Dnah2 protein_coding protein_coding MGP_AJ_T0029937.1 MGP_AJ_G0018503.1 mouse_genomes_project 11 67223088 67358290 - MGP_AJ_P0029937 Dnah2 protein_coding unknown_likely_coding MGP_AJ_T0029938.1 MGP_AJ_G0018503.1 mouse_genomes_project 11 67266742 67267827 - Dnah2 protein_coding processed_transcript MGP_AJ_T0029939.1 MGP_AJ_G0018503.1 mouse_genomes_project 11 67321331 67360883 - Dnah2 protein_coding processed_transcript MGP_AJ_T0029940.1 MGP_AJ_G0018503.1 mouse_genomes_project 11 67326716 67327465 - Dnah2 protein_coding processed_transcript MGP_AJ_T0006381.1 MGP_AJ_G0005317.1 mouse_genomes_project 11 119543836 119545194 + Gm17586 lincRNA lincRNA MGP_AJ_T0028107.1 MGP_AJ_G0018029.1 mouse_genomes_project 11 14059895 14101463 + MGP_AJ_P0028107 Ppp3r1 protein_coding protein_coding MGP_AJ_T0099385.1 MGP_AJ_G0037351.1 mouse_genomes_project 11 117064071 117064166 - Gm24060 snRNA snRNA MGP_AJ_T0028023.1 MGP_AJ_G0018012.1 mouse_genomes_project 11 6022747 6043530 + MGP_AJ_P0028023 Gm11992 protein_coding protein_coding MGP_AJ_T0031192.1 MGP_AJ_G0018804.1 mouse_genomes_project 11 81078518 81104477 - MGP_AJ_P0031192 protein_coding protein_coding MGP_AJ_T0031194.1 MGP_AJ_G0018804.1 mouse_genomes_project 11 81080379 81103966 - MGP_AJ_P0031194 protein_coding protein_coding MGP_AJ_T0017208.1 MGP_AJ_G0015156.1 mouse_genomes_project 11 70107574 70110900 + 4930563E22Rik processed_transcript processed_transcript MGP_AJ_T0017209.1 MGP_AJ_G0015156.1 mouse_genomes_project 11 70107608 70110894 + 4930563E22Rik processed_transcript processed_transcript MGP_AJ_T0098541.1 MGP_AJ_G0036525.1 mouse_genomes_project 11 70172950 70173066 + n-R5s70 rRNA rRNA MGP_AJ_T0033087.1 MGP_AJ_G0019285.1 mouse_genomes_project 11 105670330 105768565 - MGP_AJ_P0033087 Bptf protein_coding protein_coding MGP_AJ_T0033088.1 MGP_AJ_G0019285.1 mouse_genomes_project 11 105670332 105769218 - MGP_AJ_P0033088 Bptf protein_coding protein_coding MGP_AJ_T0033089.1 MGP_AJ_G0019285.1 mouse_genomes_project 11 105670332 105769218 - MGP_AJ_P0033089 Bptf protein_coding protein_coding MGP_AJ_T0033090.1 MGP_AJ_G0019285.1 mouse_genomes_project 11 105672753 105680905 - Bptf protein_coding processed_transcript MGP_AJ_T0033091.1 MGP_AJ_G0019285.1 mouse_genomes_project 11 105673020 105768083 - MGP_AJ_P0033091 Bptf protein_coding unknown_likely_coding MGP_AJ_T0033092.1 MGP_AJ_G0019285.1 mouse_genomes_project 11 105680248 105684452 - Bptf protein_coding processed_transcript MGP_AJ_T0033093.1 MGP_AJ_G0019285.1 mouse_genomes_project 11 105683842 105687379 - MGP_AJ_P0033093 Bptf protein_coding protein_coding MGP_AJ_T0033094.1 MGP_AJ_G0019285.1 mouse_genomes_project 11 105694908 105701517 - MGP_AJ_P0033094 Bptf protein_coding protein_coding MGP_AJ_T0003136.1 MGP_AJ_G0002908.1 mouse_genomes_project 11 26508399 26510674 + Gm12089 antisense antisense MGP_AJ_T0028622.1 MGP_AJ_G0018155.1 mouse_genomes_project 11 41797187 42193898 + MGP_AJ_P0028622 Ebf1 protein_coding protein_coding MGP_AJ_T0028623.1 MGP_AJ_G0018155.1 mouse_genomes_project 11 41797187 42194432 + MGP_AJ_P0028623 Ebf1 protein_coding protein_coding MGP_AJ_T0028624.1 MGP_AJ_G0018155.1 mouse_genomes_project 11 41797187 42196996 + MGP_AJ_P0028624 Ebf1 protein_coding protein_coding MGP_AJ_T0028625.1 MGP_AJ_G0018155.1 mouse_genomes_project 11 41801907 41832023 + Ebf1 protein_coding processed_transcript MGP_AJ_T0028626.1 MGP_AJ_G0018155.1 mouse_genomes_project 11 41801970 41828634 + Ebf1 protein_coding processed_transcript MGP_AJ_T0028627.1 MGP_AJ_G0018155.1 mouse_genomes_project 11 41802012 42193651 + MGP_AJ_P0028627 Ebf1 protein_coding unknown_likely_coding MGP_AJ_T0028628.1 MGP_AJ_G0018155.1 mouse_genomes_project 11 41805570 41828624 + Ebf1 protein_coding processed_transcript MGP_AJ_T0028629.1 MGP_AJ_G0018155.1 mouse_genomes_project 11 42101540 42161850 + Ebf1 protein_coding processed_transcript MGP_AJ_T0012633.1 MGP_AJ_G0010728.1 mouse_genomes_project 11 57149100 57149753 - processed_pseudogene processed_pseudogene MGP_AJ_T0006173.1 MGP_AJ_G0005153.1 mouse_genomes_project 11 4250482 4271406 - Gm11986 lincRNA lincRNA MGP_AJ_T0027917.1 MGP_AJ_G0017987.1 mouse_genomes_project 11 2942597 3035010 - MGP_AJ_P0027917 Camk2b protein_coding protein_coding MGP_AJ_T0027918.1 MGP_AJ_G0017987.1 mouse_genomes_project 11 2942610 2957067 - Camk2b protein_coding processed_transcript MGP_AJ_T0027919.1 MGP_AJ_G0017987.1 mouse_genomes_project 11 2942614 3035010 - MGP_AJ_P0027919 Camk2b protein_coding protein_coding MGP_AJ_T0027920.1 MGP_AJ_G0017987.1 mouse_genomes_project 11 2942614 3034825 - MGP_AJ_P0027920 Camk2b protein_coding protein_coding MGP_AJ_T0027921.1 MGP_AJ_G0017987.1 mouse_genomes_project 11 2944496 3034825 - MGP_AJ_P0027921 Camk2b protein_coding protein_coding MGP_AJ_T0027922.1 MGP_AJ_G0017987.1 mouse_genomes_project 11 2944597 3034844 - MGP_AJ_P0027922 Camk2b protein_coding protein_coding MGP_AJ_T0027923.1 MGP_AJ_G0017987.1 mouse_genomes_project 11 2944600 3034807 - MGP_AJ_P0027923 Camk2b protein_coding protein_coding MGP_AJ_T0027924.1 MGP_AJ_G0017987.1 mouse_genomes_project 11 2944600 3035004 - MGP_AJ_P0027924 Camk2b protein_coding protein_coding MGP_AJ_T0027925.1 MGP_AJ_G0017987.1 mouse_genomes_project 11 2944608 3034874 - MGP_AJ_P0027925 Camk2b protein_coding protein_coding MGP_AJ_T0027926.1 MGP_AJ_G0017987.1 mouse_genomes_project 11 2944663 3034800 - MGP_AJ_P0027926 Camk2b protein_coding protein_coding MGP_AJ_T0027927.1 MGP_AJ_G0017987.1 mouse_genomes_project 11 2945145 3034832 - MGP_AJ_P0027927 Camk2b protein_coding protein_coding MGP_AJ_T0027928.1 MGP_AJ_G0017987.1 mouse_genomes_project 11 2961028 3034800 - Camk2b protein_coding processed_transcript MGP_AJ_T0027929.1 MGP_AJ_G0017987.1 mouse_genomes_project 11 2963322 2973392 - Camk2b protein_coding processed_transcript MGP_AJ_T0027930.1 MGP_AJ_G0017987.1 mouse_genomes_project 11 2965747 3035624 - Camk2b protein_coding processed_transcript MGP_AJ_T0027931.1 MGP_AJ_G0017987.1 mouse_genomes_project 11 2979837 3034920 - Camk2b protein_coding processed_transcript MGP_AJ_T0012472.1 MGP_AJ_G0010567.1 mouse_genomes_project 11 3535823 3536898 - processed_pseudogene processed_pseudogene MGP_AJ_T0012493.1 MGP_AJ_G0010588.1 mouse_genomes_project 11 13346319 13347376 + processed_pseudogene processed_pseudogene MGP_AJ_T0031488.1 MGP_AJ_G0018879.1 mouse_genomes_project 11 85979738 85991108 + MGP_AJ_P0031488 Mpo protein_coding protein_coding MGP_AJ_T0031489.1 MGP_AJ_G0018879.1 mouse_genomes_project 11 85979954 85982166 + MGP_AJ_P0031489 Mpo protein_coding protein_coding MGP_AJ_T0031490.1 MGP_AJ_G0018879.1 mouse_genomes_project 11 85980368 85991108 + MGP_AJ_P0031490 Mpo protein_coding protein_coding MGP_AJ_T0031491.1 MGP_AJ_G0018879.1 mouse_genomes_project 11 85981317 85986621 + MGP_AJ_P0031491 Mpo protein_coding nonsense_mediated_decay MGP_AJ_T0031492.1 MGP_AJ_G0018879.1 mouse_genomes_project 11 85989236 85990520 + MGP_AJ_P0031492 Mpo protein_coding protein_coding MGP_AJ_T0031493.1 MGP_AJ_G0018879.1 mouse_genomes_project 11 85989811 85991068 + Mpo protein_coding retained_intron MGP_AJ_T0030993.1 MGP_AJ_G0018750.1 mouse_genomes_project 11 76478142 76483742 - MGP_AJ_P0030993 Tmem199 protein_coding protein_coding MGP_AJ_T0030994.1 MGP_AJ_G0018750.1 mouse_genomes_project 11 76478339 76479906 - Tmem199 protein_coding retained_intron MGP_AJ_T0030995.1 MGP_AJ_G0018750.1 mouse_genomes_project 11 76479595 76483615 - Tmem199 protein_coding retained_intron MGP_AJ_T0030996.1 MGP_AJ_G0018750.1 mouse_genomes_project 11 76481083 76483653 - Tmem199 protein_coding retained_intron MGP_AJ_T0033345.1 MGP_AJ_G0019345.1 mouse_genomes_project 11 114051517 114067797 - MGP_AJ_P0033345 Grin2c protein_coding protein_coding MGP_AJ_T0033346.1 MGP_AJ_G0019345.1 mouse_genomes_project 11 114051517 114069611 - MGP_AJ_P0033346 Grin2c protein_coding protein_coding MGP_AJ_T0028825.1 MGP_AJ_G0018217.1 mouse_genomes_project 11 47659200 47668846 + MGP_AJ_P0028825 Hnrnph1 protein_coding protein_coding MGP_AJ_T0028826.1 MGP_AJ_G0018217.1 mouse_genomes_project 11 47659930 47668845 + MGP_AJ_P0028826 Hnrnph1 protein_coding protein_coding MGP_AJ_T0028827.1 MGP_AJ_G0018217.1 mouse_genomes_project 11 47659962 47668846 + Hnrnph1 protein_coding processed_transcript MGP_AJ_T0028828.1 MGP_AJ_G0018217.1 mouse_genomes_project 11 47659976 47664818 + Hnrnph1 protein_coding processed_transcript MGP_AJ_T0028829.1 MGP_AJ_G0018217.1 mouse_genomes_project 11 47659980 47668133 + Hnrnph1 protein_coding processed_transcript MGP_AJ_T0028830.1 MGP_AJ_G0018217.1 mouse_genomes_project 11 47659980 47665404 + Hnrnph1 protein_coding processed_transcript MGP_AJ_T0028831.1 MGP_AJ_G0018217.1 mouse_genomes_project 11 47659980 47668846 + MGP_AJ_P0028831 Hnrnph1 protein_coding protein_coding MGP_AJ_T0028832.1 MGP_AJ_G0018217.1 mouse_genomes_project 11 47660502 47664349 + Hnrnph1 protein_coding processed_transcript MGP_AJ_T0028833.1 MGP_AJ_G0018217.1 mouse_genomes_project 11 47660502 47662402 + Hnrnph1 protein_coding processed_transcript MGP_AJ_T0028834.1 MGP_AJ_G0018217.1 mouse_genomes_project 11 47660502 47663182 + Hnrnph1 protein_coding processed_transcript MGP_AJ_T0028835.1 MGP_AJ_G0018217.1 mouse_genomes_project 11 47660512 47668135 + Hnrnph1 protein_coding processed_transcript MGP_AJ_T0028836.1 MGP_AJ_G0018217.1 mouse_genomes_project 11 47665158 47666472 + Hnrnph1 protein_coding processed_transcript MGP_AJ_T0028837.1 MGP_AJ_G0018217.1 mouse_genomes_project 11 47665298 47666245 + Hnrnph1 protein_coding processed_transcript MGP_AJ_T0028838.1 MGP_AJ_G0018217.1 mouse_genomes_project 11 47665390 47668640 + Hnrnph1 protein_coding processed_transcript MGP_AJ_T0028839.1 MGP_AJ_G0018217.1 mouse_genomes_project 11 47665453 47666132 + Hnrnph1 protein_coding processed_transcript MGP_AJ_T0028840.1 MGP_AJ_G0018217.1 mouse_genomes_project 11 47666023 47666905 + Hnrnph1 protein_coding processed_transcript MGP_AJ_T0028841.1 MGP_AJ_G0018217.1 mouse_genomes_project 11 47666042 47668707 + Hnrnph1 protein_coding processed_transcript MGP_AJ_T0028842.1 MGP_AJ_G0018217.1 mouse_genomes_project 11 47667174 47668544 + Hnrnph1 protein_coding processed_transcript MGP_AJ_T0006190.1 MGP_AJ_G0005169.1 mouse_genomes_project 11 19655737 19659637 + Gm12056 lincRNA lincRNA MGP_AJ_T0034123.1 MGP_AJ_G0019493.1 mouse_genomes_project 11 119635711 119637375 - MGP_AJ_P0034123 protein_coding protein_coding MGP_AJ_T0034124.1 MGP_AJ_G0019493.1 mouse_genomes_project 11 119635711 119637337 - MGP_AJ_P0034124 protein_coding protein_coding MGP_AJ_T0034125.1 MGP_AJ_G0019493.1 mouse_genomes_project 11 119635737 119637338 - protein_coding retained_intron MGP_AJ_T0034126.1 MGP_AJ_G0019493.1 mouse_genomes_project 11 119635767 119637323 - protein_coding processed_transcript MGP_AJ_T0028677.1 MGP_AJ_G0018172.1 mouse_genomes_project 11 43896949 43925564 + MGP_AJ_P0028677 Havcr1 protein_coding protein_coding MGP_AJ_T0028678.1 MGP_AJ_G0018172.1 mouse_genomes_project 11 43907677 43941742 + MGP_AJ_P0028678 Havcr1 protein_coding protein_coding MGP_AJ_T0028679.1 MGP_AJ_G0018172.1 mouse_genomes_project 11 43919824 43941740 + MGP_AJ_P0028679 Havcr1 protein_coding protein_coding MGP_AJ_T0028680.1 MGP_AJ_G0018172.1 mouse_genomes_project 11 43920478 43941742 + MGP_AJ_P0028680 Havcr1 protein_coding protein_coding MGP_AJ_T0012670.1 MGP_AJ_G0010765.1 mouse_genomes_project 11 71087822 71088664 + processed_pseudogene processed_pseudogene MGP_AJ_T0017265.1 MGP_AJ_G0015192.1 mouse_genomes_project 11 111411328 111462684 - BC006965 processed_transcript processed_transcript MGP_AJ_T0017266.1 MGP_AJ_G0015192.1 mouse_genomes_project 11 111412203 111419592 - BC006965 processed_transcript processed_transcript MGP_AJ_T0017267.1 MGP_AJ_G0015192.1 mouse_genomes_project 11 111412220 111416783 - BC006965 processed_transcript processed_transcript MGP_AJ_T0017268.1 MGP_AJ_G0015192.1 mouse_genomes_project 11 111416585 111424298 - BC006965 processed_transcript processed_transcript MGP_AJ_T0017269.1 MGP_AJ_G0015192.1 mouse_genomes_project 11 111417576 111419592 - BC006965 processed_transcript processed_transcript MGP_AJ_T0017270.1 MGP_AJ_G0015192.1 mouse_genomes_project 11 111419468 111462250 - BC006965 processed_transcript processed_transcript MGP_AJ_T0017271.1 MGP_AJ_G0015192.1 mouse_genomes_project 11 111419555 111462668 - BC006965 processed_transcript processed_transcript MGP_AJ_T0017272.1 MGP_AJ_G0015192.1 mouse_genomes_project 11 111424367 111442394 - BC006965 processed_transcript processed_transcript MGP_AJ_T0017273.1 MGP_AJ_G0015192.1 mouse_genomes_project 11 111424483 111462690 - BC006965 processed_transcript processed_transcript MGP_AJ_T0017274.1 MGP_AJ_G0015192.1 mouse_genomes_project 11 111424558 111462668 - BC006965 processed_transcript processed_transcript MGP_AJ_T0017275.1 MGP_AJ_G0015192.1 mouse_genomes_project 11 111434408 111442553 - BC006965 processed_transcript processed_transcript MGP_AJ_T0017276.1 MGP_AJ_G0015192.1 mouse_genomes_project 11 111434519 111462691 - BC006965 processed_transcript processed_transcript MGP_AJ_T0017277.1 MGP_AJ_G0015192.1 mouse_genomes_project 11 111434626 111462684 - BC006965 processed_transcript processed_transcript MGP_AJ_T0017278.1 MGP_AJ_G0015192.1 mouse_genomes_project 11 111438666 111462669 - BC006965 processed_transcript processed_transcript MGP_AJ_T0017279.1 MGP_AJ_G0015192.1 mouse_genomes_project 11 111438666 111462669 - BC006965 processed_transcript processed_transcript MGP_AJ_T0017280.1 MGP_AJ_G0015192.1 mouse_genomes_project 11 111438668 111532604 - BC006965 processed_transcript processed_transcript MGP_AJ_T0017281.1 MGP_AJ_G0015192.1 mouse_genomes_project 11 111442358 111462667 - BC006965 processed_transcript processed_transcript MGP_AJ_T0017282.1 MGP_AJ_G0015192.1 mouse_genomes_project 11 111470151 111494924 - BC006965 processed_transcript processed_transcript MGP_AJ_T0017175.1 MGP_AJ_G0015136.1 mouse_genomes_project 11 26175001 26177696 - A630052C17Rik processed_transcript processed_transcript MGP_AJ_T0031985.1 MGP_AJ_G0019006.1 mouse_genomes_project 11 96038435 96067833 - MGP_AJ_P0031985 Pip4k2b protein_coding protein_coding MGP_AJ_T0031986.1 MGP_AJ_G0019006.1 mouse_genomes_project 11 96043662 96049985 - Pip4k2b protein_coding processed_transcript MGP_AJ_T0033014.1 MGP_AJ_G0019271.1 mouse_genomes_project 11 104922344 104923939 - MGP_AJ_P0033014 Gh protein_coding protein_coding MGP_AJ_T0003216.1 MGP_AJ_G0002977.1 mouse_genomes_project 11 66848635 66851425 - 9330160F10Rik antisense antisense MGP_AJ_T0012776.1 MGP_AJ_G0010871.1 mouse_genomes_project 11 113131216 113132349 + processed_pseudogene processed_pseudogene MGP_AJ_T0030831.1 MGP_AJ_G0018716.1 mouse_genomes_project 11 75461266 75466185 + MGP_AJ_P0030831 Abhd15 protein_coding protein_coding MGP_AJ_T0030832.1 MGP_AJ_G0018716.1 mouse_genomes_project 11 75462129 75484754 + MGP_AJ_P0030832 Abhd15 protein_coding protein_coding MGP_AJ_T0030834.1 MGP_AJ_G0018716.1 mouse_genomes_project 11 75464757 75484752 + MGP_AJ_P0030834 Abhd15 protein_coding protein_coding MGP_AJ_T0032435.1 MGP_AJ_G0019155.1 mouse_genomes_project 11 99654068 99691305 - MGP_AJ_P0032435 Ezh1 protein_coding protein_coding MGP_AJ_T0032436.1 MGP_AJ_G0019155.1 mouse_genomes_project 11 99654069 99691292 - MGP_AJ_P0032436 Ezh1 protein_coding protein_coding MGP_AJ_T0032437.1 MGP_AJ_G0019155.1 mouse_genomes_project 11 99656228 99657376 - Ezh1 protein_coding processed_transcript MGP_AJ_T0032438.1 MGP_AJ_G0019155.1 mouse_genomes_project 11 99656683 99667822 - Ezh1 protein_coding processed_transcript MGP_AJ_T0032439.1 MGP_AJ_G0019155.1 mouse_genomes_project 11 99662501 99664807 - Ezh1 protein_coding processed_transcript MGP_AJ_T0032440.1 MGP_AJ_G0019155.1 mouse_genomes_project 11 99663041 99690922 - MGP_AJ_P0032440 Ezh1 protein_coding protein_coding MGP_AJ_T0032441.1 MGP_AJ_G0019155.1 mouse_genomes_project 11 99663166 99675079 - Ezh1 protein_coding processed_transcript MGP_AJ_T0032442.1 MGP_AJ_G0019155.1 mouse_genomes_project 11 99672169 99673906 - Ezh1 protein_coding processed_transcript MGP_AJ_T0032443.1 MGP_AJ_G0019155.1 mouse_genomes_project 11 99682905 99691284 - Ezh1 protein_coding processed_transcript MGP_AJ_T0029122.1 MGP_AJ_G0018291.1 mouse_genomes_project 11 52376177 52424081 - MGP_AJ_P0029122 Tnip1 protein_coding protein_coding MGP_AJ_T0029123.1 MGP_AJ_G0018291.1 mouse_genomes_project 11 52376179 52424063 - Tnip1 protein_coding processed_transcript MGP_AJ_T0029124.1 MGP_AJ_G0018291.1 mouse_genomes_project 11 52376179 52430949 - MGP_AJ_P0029124 Tnip1 protein_coding protein_coding MGP_AJ_T0029125.1 MGP_AJ_G0018291.1 mouse_genomes_project 11 52376179 52430945 - MGP_AJ_P0029125 Tnip1 protein_coding protein_coding MGP_AJ_T0029126.1 MGP_AJ_G0018291.1 mouse_genomes_project 11 52376179 52430950 - MGP_AJ_P0029126 Tnip1 protein_coding protein_coding MGP_AJ_T0029127.1 MGP_AJ_G0018291.1 mouse_genomes_project 11 52376179 52430943 - MGP_AJ_P0029127 Tnip1 protein_coding protein_coding MGP_AJ_T0029128.1 MGP_AJ_G0018291.1 mouse_genomes_project 11 52376181 52430942 - MGP_AJ_P0029128 Tnip1 protein_coding protein_coding MGP_AJ_T0029129.1 MGP_AJ_G0018291.1 mouse_genomes_project 11 52384119 52386583 - Tnip1 protein_coding retained_intron MGP_AJ_T0029130.1 MGP_AJ_G0018291.1 mouse_genomes_project 11 52392211 52424081 - MGP_AJ_P0029130 Tnip1 protein_coding protein_coding MGP_AJ_T0029131.1 MGP_AJ_G0018291.1 mouse_genomes_project 11 52399591 52424006 - MGP_AJ_P0029131 Tnip1 protein_coding protein_coding MGP_AJ_T0029132.1 MGP_AJ_G0018291.1 mouse_genomes_project 11 52407287 52424046 - Tnip1 protein_coding processed_transcript MGP_AJ_T0029133.1 MGP_AJ_G0018291.1 mouse_genomes_project 11 52407341 52430942 - Tnip1 protein_coding processed_transcript MGP_AJ_T0009724.1 MGP_AJ_G0007846.1 mouse_genomes_project 11 81095339 81095402 - Mir7679 miRNA miRNA MGP_AJ_T0028696.1 MGP_AJ_G0018177.1 mouse_genomes_project 11 45961390 45974481 + MGP_AJ_P0028696 protein_coding protein_coding MGP_AJ_T0028697.1 MGP_AJ_G0018177.1 mouse_genomes_project 11 45961396 45965359 + MGP_AJ_P0028697 protein_coding nonsense_mediated_decay MGP_AJ_T0028698.1 MGP_AJ_G0018177.1 mouse_genomes_project 11 45962439 45969473 + MGP_AJ_P0028698 protein_coding protein_coding MGP_AJ_T0028699.1 MGP_AJ_G0018177.1 mouse_genomes_project 11 45962729 45969530 + MGP_AJ_P0028699 protein_coding protein_coding MGP_AJ_T0028700.1 MGP_AJ_G0018177.1 mouse_genomes_project 11 45962762 45975115 + MGP_AJ_P0028700 protein_coding protein_coding MGP_AJ_T0028701.1 MGP_AJ_G0018177.1 mouse_genomes_project 11 45971827 45976137 + protein_coding retained_intron MGP_AJ_T0003264.1 MGP_AJ_G0003014.1 mouse_genomes_project 11 93405117 93419124 + Dlx4os antisense antisense MGP_AJ_T0011318.1 MGP_AJ_G0009440.1 mouse_genomes_project 11 115972630 115972958 + Gm22667 misc_RNA misc_RNA MGP_AJ_T0030525.1 MGP_AJ_G0018638.1 mouse_genomes_project 11 71626377 71651401 + MGP_AJ_P0030525 Zfp735 protein_coding protein_coding MGP_AJ_T0030526.1 MGP_AJ_G0018638.1 mouse_genomes_project 11 71626398 71648432 + Zfp735 protein_coding processed_transcript MGP_AJ_T0030527.1 MGP_AJ_G0018638.1 mouse_genomes_project 11 71631509 71648364 + Zfp735 protein_coding processed_transcript MGP_AJ_T0003176.1 MGP_AJ_G0002945.1 mouse_genomes_project 11 55607408 55609871 + Gm12246 antisense antisense MGP_AJ_T0029340.1 MGP_AJ_G0018376.1 mouse_genomes_project 11 57394463 57395354 - Cops3 protein_coding processed_transcript MGP_AJ_T0029341.1 MGP_AJ_G0018376.1 mouse_genomes_project 11 57394463 57416971 - MGP_AJ_P0029341 Cops3 protein_coding protein_coding MGP_AJ_T0029342.1 MGP_AJ_G0018376.1 mouse_genomes_project 11 57398698 57414269 - MGP_AJ_P0029342 Cops3 protein_coding protein_coding MGP_AJ_T0029343.1 MGP_AJ_G0018376.1 mouse_genomes_project 11 57400624 57416971 - Cops3 protein_coding processed_transcript MGP_AJ_T0029344.1 MGP_AJ_G0018376.1 mouse_genomes_project 11 57401654 57410612 - Cops3 protein_coding processed_transcript MGP_AJ_T0029345.1 MGP_AJ_G0018376.1 mouse_genomes_project 11 57403544 57416971 - Cops3 protein_coding processed_transcript MGP_AJ_T0029346.1 MGP_AJ_G0018376.1 mouse_genomes_project 11 57410409 57416885 - MGP_AJ_P0029346 Cops3 protein_coding protein_coding MGP_AJ_T0029347.1 MGP_AJ_G0018376.1 mouse_genomes_project 11 57413971 57416945 - Cops3 protein_coding processed_transcript MGP_AJ_T0031723.1 MGP_AJ_G0018937.1 mouse_genomes_project 11 93012867 93018336 - MGP_AJ_P0031723 Tmem92 protein_coding protein_coding MGP_AJ_T0031724.1 MGP_AJ_G0018937.1 mouse_genomes_project 11 93013414 93015495 - MGP_AJ_P0031724 Tmem92 protein_coding protein_coding MGP_AJ_T0031725.1 MGP_AJ_G0018937.1 mouse_genomes_project 11 93013414 93015495 - MGP_AJ_P0031725 Tmem92 protein_coding nonsense_mediated_decay MGP_AJ_T0028712.1 MGP_AJ_G0018184.1 mouse_genomes_project 11 46256094 46265546 - MGP_AJ_P0028712 Tgtp1 protein_coding protein_coding MGP_AJ_T0029139.1 MGP_AJ_G0018294.1 mouse_genomes_project 11 52572319 52587272 + MGP_AJ_P0029139 Gm2a protein_coding protein_coding MGP_AJ_T0032245.1 MGP_AJ_G0019102.1 mouse_genomes_project 11 98416726 98421299 - MGP_AJ_P0032245 Krt33a protein_coding protein_coding MGP_AJ_T0032206.1 MGP_AJ_G0019064.1 mouse_genomes_project 11 97906666 97912342 - MGP_AJ_P0032206 Krt40 protein_coding protein_coding MGP_AJ_T0032207.1 MGP_AJ_G0019064.1 mouse_genomes_project 11 97906666 97912342 - MGP_AJ_P0032207 Krt40 protein_coding protein_coding MGP_AJ_T0012699.1 MGP_AJ_G0010794.1 mouse_genomes_project 11 79606886 79607705 - processed_pseudogene processed_pseudogene MGP_AJ_T0029976.1 MGP_AJ_G0018513.1 mouse_genomes_project 11 67480228 67482169 - MGP_AJ_P0029976 Cd68 protein_coding protein_coding MGP_AJ_T0029977.1 MGP_AJ_G0018513.1 mouse_genomes_project 11 67480321 67482078 - Cd68 protein_coding processed_transcript MGP_AJ_T0029978.1 MGP_AJ_G0018513.1 mouse_genomes_project 11 67480386 67482078 - MGP_AJ_P0029978 Cd68 protein_coding protein_coding MGP_AJ_T0029642.1 MGP_AJ_G0018432.1 mouse_genomes_project 11 60565435 60588909 + MGP_AJ_P0029642 Trim16 protein_coding protein_coding MGP_AJ_T0029643.1 MGP_AJ_G0018432.1 mouse_genomes_project 11 60565457 60596997 + MGP_AJ_P0029643 Trim16 protein_coding protein_coding MGP_AJ_T0029644.1 MGP_AJ_G0018432.1 mouse_genomes_project 11 60565644 60566453 + Trim16 protein_coding processed_transcript MGP_AJ_T0029645.1 MGP_AJ_G0018432.1 mouse_genomes_project 11 60565673 60588909 + MGP_AJ_P0029645 Trim16 protein_coding protein_coding MGP_AJ_T0029646.1 MGP_AJ_G0018432.1 mouse_genomes_project 11 60579689 60587391 + Trim16 protein_coding processed_transcript MGP_AJ_T0009727.1 MGP_AJ_G0007849.1 mouse_genomes_project 11 84762069 84762161 - Mir21a miRNA miRNA MGP_AJ_T0102239.1 MGP_AJ_G0039982.1 mouse_genomes_project 11 71583192 71588386 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0012612.1 MGP_AJ_G0010707.1 mouse_genomes_project 11 51419517 51419960 - processed_pseudogene processed_pseudogene MGP_AJ_T0029227.1 MGP_AJ_G0018326.1 mouse_genomes_project 11 55993273 55996053 - MGP_AJ_P0029227 protein_coding protein_coding MGP_AJ_T0029228.1 MGP_AJ_G0018326.1 mouse_genomes_project 11 55993910 55996067 - MGP_AJ_P0029228 protein_coding protein_coding MGP_AJ_T0032238.1 MGP_AJ_G0019095.1 mouse_genomes_project 11 98300772 98301745 + MGP_AJ_P0032238 Krtap31-1 protein_coding protein_coding MGP_AJ_T0032494.1 MGP_AJ_G0019165.1 mouse_genomes_project 11 99838460 99848798 + MGP_AJ_P0032494 G6pc protein_coding protein_coding MGP_AJ_T0027895.1 MGP_AJ_G0017980.1 mouse_genomes_project 11 2770758 2772851 - MGP_AJ_P0027895 Pgam2 protein_coding protein_coding MGP_AJ_T0003298.1 MGP_AJ_G0003040.1 mouse_genomes_project 11 99938403 99939218 - Gm11626 antisense antisense MGP_AJ_T0099351.1 MGP_AJ_G0037317.1 mouse_genomes_project 11 81379286 81379477 + Gm23444 snRNA snRNA MGP_AJ_T0033104.1 MGP_AJ_G0019288.1 mouse_genomes_project 11 106125738 106144246 + MGP_AJ_P0033104 Psmd12 protein_coding protein_coding MGP_AJ_T0033105.1 MGP_AJ_G0019288.1 mouse_genomes_project 11 106125782 106151018 + MGP_AJ_P0033105 Psmd12 protein_coding protein_coding MGP_AJ_T0033106.1 MGP_AJ_G0019288.1 mouse_genomes_project 11 106125831 106143806 + MGP_AJ_P0033106 Psmd12 protein_coding protein_coding MGP_AJ_T0029058.1 MGP_AJ_G0018278.1 mouse_genomes_project 11 51435573 51481276 - MGP_AJ_P0029058 Slc22a4 protein_coding protein_coding MGP_AJ_T0029059.1 MGP_AJ_G0018278.1 mouse_genomes_project 11 51444509 51461324 - Slc22a4 protein_coding processed_transcript MGP_AJ_T0029060.1 MGP_AJ_G0018278.1 mouse_genomes_project 11 51467597 51481138 - Slc22a4 protein_coding processed_transcript MGP_AJ_T0027872.1 MGP_AJ_G0017973.1 mouse_genomes_project 11 2237436 2404121 - MGP_AJ_P0027872 Znrf3 protein_coding protein_coding MGP_AJ_T0027873.1 MGP_AJ_G0017973.1 mouse_genomes_project 11 2239726 2339226 - MGP_AJ_P0027873 Znrf3 protein_coding protein_coding MGP_AJ_T0027874.1 MGP_AJ_G0017973.1 mouse_genomes_project 11 2249904 2404121 - MGP_AJ_P0027874 Znrf3 protein_coding protein_coding MGP_AJ_T0033938.1 MGP_AJ_G0019458.1 mouse_genomes_project 11 118993914 119002115 - MGP_AJ_P0033938 Enthd2 protein_coding protein_coding MGP_AJ_T0033939.1 MGP_AJ_G0019458.1 mouse_genomes_project 11 118993914 119002115 - MGP_AJ_P0033939 Enthd2 protein_coding protein_coding MGP_AJ_T0033940.1 MGP_AJ_G0019458.1 mouse_genomes_project 11 118993914 119002115 - MGP_AJ_P0033940 Enthd2 protein_coding protein_coding MGP_AJ_T0033941.1 MGP_AJ_G0019458.1 mouse_genomes_project 11 118997543 119000769 - Enthd2 protein_coding processed_transcript MGP_AJ_T0033942.1 MGP_AJ_G0019458.1 mouse_genomes_project 11 118998913 119000644 - Enthd2 protein_coding processed_transcript MGP_AJ_T0033943.1 MGP_AJ_G0019458.1 mouse_genomes_project 11 119000282 119002084 - Enthd2 protein_coding processed_transcript MGP_AJ_T0102243.1 MGP_AJ_G0039986.1 mouse_genomes_project 11 72194736 72195755 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0028231.1 MGP_AJ_G0018060.1 mouse_genomes_project 11 20419762 20428752 - MGP_AJ_P0028231 Ahsa2 protein_coding protein_coding MGP_AJ_T0028232.1 MGP_AJ_G0018060.1 mouse_genomes_project 11 20420796 20423520 - Ahsa2 protein_coding processed_transcript MGP_AJ_T0028233.1 MGP_AJ_G0018060.1 mouse_genomes_project 11 20421534 20422638 - Ahsa2 protein_coding processed_transcript MGP_AJ_T0028234.1 MGP_AJ_G0018060.1 mouse_genomes_project 11 20421611 20429068 - MGP_AJ_P0028234 Ahsa2 protein_coding protein_coding MGP_AJ_T0028235.1 MGP_AJ_G0018060.1 mouse_genomes_project 11 20421640 20422291 - Ahsa2 protein_coding processed_transcript MGP_AJ_T0028236.1 MGP_AJ_G0018060.1 mouse_genomes_project 11 20422322 20429119 - MGP_AJ_P0028236 Ahsa2 protein_coding protein_coding MGP_AJ_T0028237.1 MGP_AJ_G0018060.1 mouse_genomes_project 11 20424367 20429109 - MGP_AJ_P0028237 Ahsa2 protein_coding protein_coding MGP_AJ_T0031850.1 MGP_AJ_G0018978.1 mouse_genomes_project 11 94748337 95047254 + MGP_AJ_P0031850 Skap1 protein_coding protein_coding MGP_AJ_T0031851.1 MGP_AJ_G0018978.1 mouse_genomes_project 11 94748337 95047443 + MGP_AJ_P0031851 Skap1 protein_coding protein_coding MGP_AJ_T0031852.1 MGP_AJ_G0018978.1 mouse_genomes_project 11 94748344 94778534 + MGP_AJ_P0031852 Skap1 protein_coding protein_coding MGP_AJ_T0031853.1 MGP_AJ_G0018978.1 mouse_genomes_project 11 94748368 95018228 + Skap1 protein_coding retained_intron MGP_AJ_T0031854.1 MGP_AJ_G0018978.1 mouse_genomes_project 11 94748371 95047254 + MGP_AJ_P0031854 Skap1 protein_coding protein_coding MGP_AJ_T0031855.1 MGP_AJ_G0018978.1 mouse_genomes_project 11 94748377 94865188 + MGP_AJ_P0031855 Skap1 protein_coding protein_coding MGP_AJ_T0031856.1 MGP_AJ_G0018978.1 mouse_genomes_project 11 94748425 94961878 + MGP_AJ_P0031856 Skap1 protein_coding protein_coding MGP_AJ_T0031857.1 MGP_AJ_G0018978.1 mouse_genomes_project 11 94768697 94778534 + Skap1 protein_coding processed_transcript MGP_AJ_T0031858.1 MGP_AJ_G0018978.1 mouse_genomes_project 11 94774767 94990410 + Skap1 protein_coding retained_intron MGP_AJ_T0031859.1 MGP_AJ_G0018978.1 mouse_genomes_project 11 94994207 94999166 + Skap1 protein_coding retained_intron MGP_AJ_T0012638.1 MGP_AJ_G0010733.1 mouse_genomes_project 11 58499598 58500994 + processed_pseudogene processed_pseudogene MGP_AJ_T0030216.1 MGP_AJ_G0018564.1 mouse_genomes_project 11 68294230 68299834 - MGP_AJ_P0030216 Cxcl16 protein_coding protein_coding MGP_AJ_T0030217.1 MGP_AJ_G0018564.1 mouse_genomes_project 11 68294485 68299258 - MGP_AJ_P0030217 Cxcl16 protein_coding nonsense_mediated_decay MGP_AJ_T0030218.1 MGP_AJ_G0018564.1 mouse_genomes_project 11 68295037 68299682 - Cxcl16 protein_coding retained_intron MGP_AJ_T0102255.1 MGP_AJ_G0039998.1 mouse_genomes_project 11 93119043 93119772 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0029474.1 MGP_AJ_G0018403.1 mouse_genomes_project 11 58899062 58903859 + MGP_AJ_P0029474 Aldh3a1 protein_coding protein_coding MGP_AJ_T0029475.1 MGP_AJ_G0018403.1 mouse_genomes_project 11 58900146 58909947 + MGP_AJ_P0029475 Aldh3a1 protein_coding protein_coding MGP_AJ_T0029476.1 MGP_AJ_G0018403.1 mouse_genomes_project 11 58900270 58909947 + MGP_AJ_P0029476 Aldh3a1 protein_coding protein_coding MGP_AJ_T0012680.1 MGP_AJ_G0010775.1 mouse_genomes_project 11 74462492 74462995 + processed_pseudogene processed_pseudogene MGP_AJ_T0030541.1 MGP_AJ_G0018648.1 mouse_genomes_project 11 71902590 71909221 - MGP_AJ_P0030541 Olfr398 protein_coding protein_coding MGP_AJ_T0030542.1 MGP_AJ_G0018648.1 mouse_genomes_project 11 71902590 71903535 - MGP_AJ_P0030542 Olfr398 protein_coding protein_coding MGP_AJ_T0034149.1 MGP_AJ_G0019498.1 mouse_genomes_project 11 119717507 119736209 - MGP_AJ_P0034149 Fasn protein_coding protein_coding MGP_AJ_T0034150.1 MGP_AJ_G0019498.1 mouse_genomes_project 11 119718766 119735757 - MGP_AJ_P0034150 Fasn protein_coding protein_coding MGP_AJ_T0034151.1 MGP_AJ_G0019498.1 mouse_genomes_project 11 119719208 119720267 - Fasn protein_coding retained_intron MGP_AJ_T0034152.1 MGP_AJ_G0019498.1 mouse_genomes_project 11 119720225 119721363 - Fasn protein_coding retained_intron MGP_AJ_T0034153.1 MGP_AJ_G0019498.1 mouse_genomes_project 11 119726156 119727117 - Fasn protein_coding retained_intron MGP_AJ_T0034154.1 MGP_AJ_G0019498.1 mouse_genomes_project 11 119734433 119735442 - MGP_AJ_P0034154 Fasn protein_coding protein_coding MGP_AJ_T0033462.1 MGP_AJ_G0019367.1 mouse_genomes_project 11 114465034 114525058 - MGP_AJ_P0033462 Grb2 protein_coding protein_coding MGP_AJ_T0033463.1 MGP_AJ_G0019367.1 mouse_genomes_project 11 114465034 114534186 - MGP_AJ_P0033463 Grb2 protein_coding protein_coding MGP_AJ_T0033464.1 MGP_AJ_G0019367.1 mouse_genomes_project 11 114465034 114524831 - MGP_AJ_P0033464 Grb2 protein_coding protein_coding MGP_AJ_T0033465.1 MGP_AJ_G0019367.1 mouse_genomes_project 11 114465639 114534165 - MGP_AJ_P0033465 Grb2 protein_coding protein_coding MGP_AJ_T0033466.1 MGP_AJ_G0019367.1 mouse_genomes_project 11 114472558 114525452 - MGP_AJ_P0033466 Grb2 protein_coding protein_coding MGP_AJ_T0012555.1 MGP_AJ_G0010650.1 mouse_genomes_project 11 27855782 27856144 - processed_pseudogene processed_pseudogene MGP_AJ_T0003329.1 MGP_AJ_G0003069.1 mouse_genomes_project 11 107597620 107600343 - Gm11670 antisense antisense MGP_AJ_T0003327.1 MGP_AJ_G0003067.1 mouse_genomes_project 11 106836853 106849119 + Gm11655 antisense antisense MGP_AJ_T0032408.1 MGP_AJ_G0019147.1 mouse_genomes_project 11 99544554 99549485 + MGP_AJ_P0032408 Mlx protein_coding protein_coding MGP_AJ_T0032409.1 MGP_AJ_G0019147.1 mouse_genomes_project 11 99544554 99549485 + MGP_AJ_P0032409 Mlx protein_coding protein_coding MGP_AJ_T0032410.1 MGP_AJ_G0019147.1 mouse_genomes_project 11 99544567 99548404 + Mlx protein_coding processed_transcript MGP_AJ_T0032411.1 MGP_AJ_G0019147.1 mouse_genomes_project 11 99544567 99548424 + Mlx protein_coding processed_transcript MGP_AJ_T0032412.1 MGP_AJ_G0019147.1 mouse_genomes_project 11 99544577 99549485 + MGP_AJ_P0032412 Mlx protein_coding protein_coding MGP_AJ_T0032413.1 MGP_AJ_G0019147.1 mouse_genomes_project 11 99544581 99546243 + MGP_AJ_P0032413 Mlx protein_coding protein_coding MGP_AJ_T0032414.1 MGP_AJ_G0019147.1 mouse_genomes_project 11 99546939 99548796 + Mlx protein_coding processed_transcript MGP_AJ_T0033809.1 MGP_AJ_G0019435.1 mouse_genomes_project 11 117292863 117305841 - MGP_AJ_P0033809 Cant1 protein_coding protein_coding MGP_AJ_T0033810.1 MGP_AJ_G0019435.1 mouse_genomes_project 11 117292863 117305807 - MGP_AJ_P0033810 Cant1 protein_coding protein_coding MGP_AJ_T0033811.1 MGP_AJ_G0019435.1 mouse_genomes_project 11 117292864 117305778 - MGP_AJ_P0033811 Cant1 protein_coding protein_coding MGP_AJ_T0033812.1 MGP_AJ_G0019435.1 mouse_genomes_project 11 117294218 117305807 - MGP_AJ_P0033812 Cant1 protein_coding protein_coding MGP_AJ_T0033813.1 MGP_AJ_G0019435.1 mouse_genomes_project 11 117294218 117302376 - MGP_AJ_P0033813 Cant1 protein_coding protein_coding MGP_AJ_T0033814.1 MGP_AJ_G0019435.1 mouse_genomes_project 11 117294218 117305778 - MGP_AJ_P0033814 Cant1 protein_coding protein_coding MGP_AJ_T0006383.1 MGP_AJ_G0005319.1 mouse_genomes_project 11 120709237 120716448 + Gm12589 lincRNA lincRNA MGP_AJ_T0006277.1 MGP_AJ_G0005242.1 mouse_genomes_project 11 70917308 70920290 - 4732414G09Rik lincRNA lincRNA MGP_AJ_T0006278.1 MGP_AJ_G0005242.1 mouse_genomes_project 11 70917308 70920253 - 4732414G09Rik lincRNA lincRNA MGP_AJ_T0031871.1 MGP_AJ_G0018981.1 mouse_genomes_project 11 95107403 95114005 - MGP_AJ_P0031871 Nfe2l1 protein_coding protein_coding MGP_AJ_T0031872.1 MGP_AJ_G0018981.1 mouse_genomes_project 11 95107413 95119528 - MGP_AJ_P0031872 Nfe2l1 protein_coding protein_coding MGP_AJ_T0031873.1 MGP_AJ_G0018981.1 mouse_genomes_project 11 95107588 95117720 - MGP_AJ_P0031873 Nfe2l1 protein_coding protein_coding MGP_AJ_T0031874.1 MGP_AJ_G0018981.1 mouse_genomes_project 11 95110084 95114119 - MGP_AJ_P0031874 Nfe2l1 protein_coding protein_coding MGP_AJ_T0031875.1 MGP_AJ_G0018981.1 mouse_genomes_project 11 95110461 95114000 - MGP_AJ_P0031875 Nfe2l1 protein_coding protein_coding MGP_AJ_T0031876.1 MGP_AJ_G0018981.1 mouse_genomes_project 11 95111337 95112717 - Nfe2l1 protein_coding processed_transcript MGP_AJ_T0031877.1 MGP_AJ_G0018981.1 mouse_genomes_project 11 95112214 95114544 - Nfe2l1 protein_coding processed_transcript MGP_AJ_T0031878.1 MGP_AJ_G0018981.1 mouse_genomes_project 11 95117733 95119501 - Nfe2l1 protein_coding processed_transcript MGP_AJ_T0033229.1 MGP_AJ_G0019316.1 mouse_genomes_project 11 111532851 111538386 + MGP_AJ_P0033229 Sox9 protein_coding protein_coding MGP_AJ_T0031779.1 MGP_AJ_G0018951.1 mouse_genomes_project 11 93679330 93741676 + MGP_AJ_P0031779 Spop protein_coding protein_coding MGP_AJ_T0031780.1 MGP_AJ_G0018951.1 mouse_genomes_project 11 93679330 93760755 + MGP_AJ_P0031780 Spop protein_coding protein_coding MGP_AJ_T0031781.1 MGP_AJ_G0018951.1 mouse_genomes_project 11 93679399 93741697 + MGP_AJ_P0031781 Spop protein_coding protein_coding MGP_AJ_T0031782.1 MGP_AJ_G0018951.1 mouse_genomes_project 11 93679488 93760755 + MGP_AJ_P0031782 Spop protein_coding protein_coding MGP_AJ_T0031783.1 MGP_AJ_G0018951.1 mouse_genomes_project 11 93741680 93757653 + Spop protein_coding processed_transcript MGP_AJ_T0028343.1 MGP_AJ_G0018083.1 mouse_genomes_project 11 26682233 26733290 + MGP_AJ_P0028343 Rtn4 protein_coding protein_coding MGP_AJ_T0028344.1 MGP_AJ_G0018083.1 mouse_genomes_project 11 26682233 26734703 + MGP_AJ_P0028344 Rtn4 protein_coding protein_coding MGP_AJ_T0028345.1 MGP_AJ_G0018083.1 mouse_genomes_project 11 26682233 26733290 + MGP_AJ_P0028345 Rtn4 protein_coding protein_coding MGP_AJ_T0028346.1 MGP_AJ_G0018083.1 mouse_genomes_project 11 26682234 26732463 + MGP_AJ_P0028346 Rtn4 protein_coding protein_coding MGP_AJ_T0028347.1 MGP_AJ_G0018083.1 mouse_genomes_project 11 26683060 26733290 + MGP_AJ_P0028347 Rtn4 protein_coding protein_coding MGP_AJ_T0028348.1 MGP_AJ_G0018083.1 mouse_genomes_project 11 26707561 26733290 + MGP_AJ_P0028348 Rtn4 protein_coding protein_coding MGP_AJ_T0028349.1 MGP_AJ_G0018083.1 mouse_genomes_project 11 26724053 26732791 + Rtn4 protein_coding processed_transcript MGP_AJ_T0028350.1 MGP_AJ_G0018083.1 mouse_genomes_project 11 26724128 26732703 + Rtn4 protein_coding processed_transcript MGP_AJ_T0028351.1 MGP_AJ_G0018083.1 mouse_genomes_project 11 26726750 26732703 + Rtn4 protein_coding processed_transcript MGP_AJ_T0028352.1 MGP_AJ_G0018083.1 mouse_genomes_project 11 26731356 26732641 + Rtn4 protein_coding processed_transcript MGP_AJ_T0033318.1 MGP_AJ_G0019339.1 mouse_genomes_project 11 113850991 113861348 - MGP_AJ_P0033318 Cd300e protein_coding protein_coding MGP_AJ_T0017202.1 MGP_AJ_G0015152.1 mouse_genomes_project 11 63934467 64062543 + Gm12296 processed_transcript processed_transcript MGP_AJ_T0033506.1 MGP_AJ_G0019373.1 mouse_genomes_project 11 114720157 114722699 - Recql5 protein_coding retained_intron MGP_AJ_T0033507.1 MGP_AJ_G0019373.1 mouse_genomes_project 11 114720157 114762470 - MGP_AJ_P0033507 Recql5 protein_coding protein_coding MGP_AJ_T0033508.1 MGP_AJ_G0019373.1 mouse_genomes_project 11 114720157 114762470 - MGP_AJ_P0033508 Recql5 protein_coding nonsense_mediated_decay MGP_AJ_T0033509.1 MGP_AJ_G0019373.1 mouse_genomes_project 11 114722977 114756343 - MGP_AJ_P0033509 Recql5 protein_coding nonsense_mediated_decay MGP_AJ_T0033510.1 MGP_AJ_G0019373.1 mouse_genomes_project 11 114723827 114762470 - Recql5 protein_coding retained_intron MGP_AJ_T0033511.1 MGP_AJ_G0019373.1 mouse_genomes_project 11 114724371 114734848 - Recql5 protein_coding processed_transcript MGP_AJ_T0033516.1 MGP_AJ_G0019373.1 mouse_genomes_project 11 114742459 114762470 - MGP_AJ_P0033516 Recql5 protein_coding nonsense_mediated_decay MGP_AJ_T0033517.1 MGP_AJ_G0019373.1 mouse_genomes_project 11 114754382 114756511 - Recql5 protein_coding retained_intron MGP_AJ_T0032295.1 MGP_AJ_G0019123.1 mouse_genomes_project 11 98871477 98890197 - MGP_AJ_P0032295 Nt5c3b protein_coding protein_coding MGP_AJ_T0032296.1 MGP_AJ_G0019123.1 mouse_genomes_project 11 98871477 98890922 - MGP_AJ_P0032296 Nt5c3b protein_coding protein_coding MGP_AJ_T0032298.1 MGP_AJ_G0019123.1 mouse_genomes_project 11 98878528 98890163 - MGP_AJ_P0032298 Nt5c3b protein_coding protein_coding MGP_AJ_T0032299.1 MGP_AJ_G0019123.1 mouse_genomes_project 11 98879031 98880702 - Nt5c3b protein_coding processed_transcript MGP_AJ_T0032300.1 MGP_AJ_G0019123.1 mouse_genomes_project 11 98882070 98890024 - Nt5c3b protein_coding processed_transcript MGP_AJ_T0032301.1 MGP_AJ_G0019123.1 mouse_genomes_project 11 98882107 98890181 - Nt5c3b protein_coding processed_transcript MGP_AJ_T0032302.1 MGP_AJ_G0019123.1 mouse_genomes_project 11 98882857 98890124 - Nt5c3b protein_coding processed_transcript MGP_AJ_T0032303.1 MGP_AJ_G0019123.1 mouse_genomes_project 11 98887399 98890037 - Nt5c3b protein_coding processed_transcript MGP_AJ_T0032304.1 MGP_AJ_G0019123.1 mouse_genomes_project 11 98888660 98890035 - Nt5c3b protein_coding processed_transcript MGP_AJ_T0003198.1 MGP_AJ_G0002963.1 mouse_genomes_project 11 60499899 60503275 - antisense antisense MGP_AJ_T0034039.1 MGP_AJ_G0019480.1 mouse_genomes_project 11 119501712 119507958 - MGP_AJ_P0034039 Alyref protein_coding protein_coding MGP_AJ_T0034040.1 MGP_AJ_G0019480.1 mouse_genomes_project 11 119504100 119505249 - Alyref protein_coding processed_transcript MGP_AJ_T0034041.1 MGP_AJ_G0019480.1 mouse_genomes_project 11 119505207 119507824 - Alyref protein_coding retained_intron MGP_AJ_T0006340.1 MGP_AJ_G0005284.1 mouse_genomes_project 11 101501984 101508934 - 2410004I01Rik lincRNA lincRNA MGP_AJ_T0029323.1 MGP_AJ_G0018373.1 mouse_genomes_project 11 57233610 57300663 + protein_coding processed_transcript MGP_AJ_T0029324.1 MGP_AJ_G0018373.1 mouse_genomes_project 11 57234800 57356674 + MGP_AJ_P0029324 protein_coding protein_coding MGP_AJ_T0029325.1 MGP_AJ_G0018373.1 mouse_genomes_project 11 57234812 57356668 + MGP_AJ_P0029325 protein_coding protein_coding MGP_AJ_T0029326.1 MGP_AJ_G0018373.1 mouse_genomes_project 11 57234812 57351953 + MGP_AJ_P0029326 protein_coding protein_coding MGP_AJ_T0029327.1 MGP_AJ_G0018373.1 mouse_genomes_project 11 57234812 57351953 + MGP_AJ_P0029327 protein_coding protein_coding MGP_AJ_T0029328.1 MGP_AJ_G0018373.1 mouse_genomes_project 11 57300658 57352332 + MGP_AJ_P0029328 protein_coding protein_coding MGP_AJ_T0029329.1 MGP_AJ_G0018373.1 mouse_genomes_project 11 57304527 57351953 + MGP_AJ_P0029329 protein_coding protein_coding MGP_AJ_T0029330.1 MGP_AJ_G0018373.1 mouse_genomes_project 11 57314968 57324654 + protein_coding processed_transcript MGP_AJ_T0029331.1 MGP_AJ_G0018373.1 mouse_genomes_project 11 57335873 57351953 + MGP_AJ_P0029331 protein_coding protein_coding MGP_AJ_T0029145.1 MGP_AJ_G0018297.1 mouse_genomes_project 11 52679357 52711551 + MGP_AJ_P0029145 Slc36a1 protein_coding protein_coding MGP_AJ_T0029146.1 MGP_AJ_G0018297.1 mouse_genomes_project 11 52679369 52689360 + Slc36a1 protein_coding processed_transcript MGP_AJ_T0029147.1 MGP_AJ_G0018297.1 mouse_genomes_project 11 52679381 52697187 + MGP_AJ_P0029147 Slc36a1 protein_coding protein_coding MGP_AJ_T0029148.1 MGP_AJ_G0018297.1 mouse_genomes_project 11 52679383 52709048 + MGP_AJ_P0029148 Slc36a1 protein_coding protein_coding MGP_AJ_T0029149.1 MGP_AJ_G0018297.1 mouse_genomes_project 11 52688892 52707830 + MGP_AJ_P0029149 Slc36a1 protein_coding protein_coding MGP_AJ_T0030564.1 MGP_AJ_G0018659.1 mouse_genomes_project 11 72273728 72274723 + MGP_AJ_P0030564 Olfr412 protein_coding protein_coding MGP_AJ_T0027937.1 MGP_AJ_G0017990.1 mouse_genomes_project 11 3173485 3192633 - MGP_AJ_P0027937 Npc1l1 protein_coding protein_coding MGP_AJ_T0033562.1 MGP_AJ_G0019384.1 mouse_genomes_project 11 114958939 114968458 - MGP_AJ_P0033562 Trim65 protein_coding protein_coding MGP_AJ_T0033563.1 MGP_AJ_G0019384.1 mouse_genomes_project 11 114962021 114968462 - Trim65 protein_coding processed_transcript MGP_AJ_T0033564.1 MGP_AJ_G0019384.1 mouse_genomes_project 11 114962021 114968460 - MGP_AJ_P0033564 Trim65 protein_coding protein_coding MGP_AJ_T0031300.1 MGP_AJ_G0018840.1 mouse_genomes_project 11 82991792 83030878 - MGP_AJ_P0031300 Ggnbp2 protein_coding protein_coding MGP_AJ_T0031301.1 MGP_AJ_G0018840.1 mouse_genomes_project 11 82991792 83030827 - MGP_AJ_P0031301 Ggnbp2 protein_coding protein_coding MGP_AJ_T0031302.1 MGP_AJ_G0018840.1 mouse_genomes_project 11 82991792 83030906 - MGP_AJ_P0031302 Ggnbp2 protein_coding protein_coding MGP_AJ_T0031303.1 MGP_AJ_G0018840.1 mouse_genomes_project 11 82992237 83030282 - MGP_AJ_P0031303 Ggnbp2 protein_coding protein_coding MGP_AJ_T0031304.1 MGP_AJ_G0018840.1 mouse_genomes_project 11 82992292 83030735 - MGP_AJ_P0031304 Ggnbp2 protein_coding protein_coding MGP_AJ_T0031305.1 MGP_AJ_G0018840.1 mouse_genomes_project 11 82992403 83030829 - MGP_AJ_P0031305 Ggnbp2 protein_coding protein_coding MGP_AJ_T0031306.1 MGP_AJ_G0018840.1 mouse_genomes_project 11 82993567 82996598 - MGP_AJ_P0031306 Ggnbp2 protein_coding protein_coding MGP_AJ_T0031307.1 MGP_AJ_G0018840.1 mouse_genomes_project 11 82993943 83030814 - MGP_AJ_P0031307 Ggnbp2 protein_coding protein_coding MGP_AJ_T0031308.1 MGP_AJ_G0018840.1 mouse_genomes_project 11 82996550 82998114 - Ggnbp2 protein_coding processed_transcript MGP_AJ_T0031309.1 MGP_AJ_G0018840.1 mouse_genomes_project 11 83012474 83018569 - Ggnbp2 protein_coding processed_transcript MGP_AJ_T0031310.1 MGP_AJ_G0018840.1 mouse_genomes_project 11 83014044 83020739 - Ggnbp2 protein_coding retained_intron MGP_AJ_T0031311.1 MGP_AJ_G0018840.1 mouse_genomes_project 11 83020798 83030580 - MGP_AJ_P0031311 Ggnbp2 protein_coding protein_coding MGP_AJ_T0031312.1 MGP_AJ_G0018840.1 mouse_genomes_project 11 83028959 83030868 - Ggnbp2 protein_coding processed_transcript MGP_AJ_T0012722.1 MGP_AJ_G0010817.1 mouse_genomes_project 11 91014229 91014810 - processed_pseudogene processed_pseudogene MGP_AJ_T0029049.1 MGP_AJ_G0018275.1 mouse_genomes_project 11 51189424 51203056 - Gm12216 protein_coding processed_transcript MGP_AJ_T0029050.1 MGP_AJ_G0018275.1 mouse_genomes_project 11 51190297 51264724 - Gm12216 protein_coding processed_transcript MGP_AJ_T0029051.1 MGP_AJ_G0018275.1 mouse_genomes_project 11 51192455 51264836 - MGP_AJ_P0029051 Gm12216 protein_coding protein_coding MGP_AJ_T0029052.1 MGP_AJ_G0018275.1 mouse_genomes_project 11 51210832 51264809 - Gm12216 protein_coding processed_transcript MGP_AJ_T0029053.1 MGP_AJ_G0018275.1 mouse_genomes_project 11 51216360 51264836 - MGP_AJ_P0029053 Gm12216 protein_coding protein_coding MGP_AJ_T0029054.1 MGP_AJ_G0018275.1 mouse_genomes_project 11 51220062 51264836 - MGP_AJ_P0029054 Gm12216 protein_coding protein_coding MGP_AJ_T0012605.1 MGP_AJ_G0010700.1 mouse_genomes_project 11 49882984 49883137 - processed_pseudogene processed_pseudogene MGP_AJ_T0003303.1 MGP_AJ_G0003045.1 mouse_genomes_project 11 100540903 100545753 - E130111B04Rik antisense antisense MGP_AJ_T0012600.1 MGP_AJ_G0010695.1 mouse_genomes_project 11 48500775 48501576 - processed_pseudogene processed_pseudogene MGP_AJ_T0034131.1 MGP_AJ_G0019495.1 mouse_genomes_project 11 119692864 119696168 - Rfng protein_coding processed_transcript MGP_AJ_T0034132.1 MGP_AJ_G0019495.1 mouse_genomes_project 11 119692866 119696190 - MGP_AJ_P0034132 Rfng protein_coding protein_coding MGP_AJ_T0011297.1 MGP_AJ_G0009419.1 mouse_genomes_project 11 40046711 40047023 + Gm25543 misc_RNA misc_RNA MGP_AJ_T0012559.1 MGP_AJ_G0010654.1 mouse_genomes_project 11 29230580 29231276 + processed_pseudogene processed_pseudogene MGP_AJ_T0030842.1 MGP_AJ_G0018721.1 mouse_genomes_project 11 75713606 75818757 + MGP_AJ_P0030842 Myo18a protein_coding protein_coding MGP_AJ_T0030843.1 MGP_AJ_G0018721.1 mouse_genomes_project 11 75713645 75773563 + MGP_AJ_P0030843 Myo18a protein_coding unknown_likely_coding MGP_AJ_T0030844.1 MGP_AJ_G0018721.1 mouse_genomes_project 11 75713661 75731170 + Myo18a protein_coding retained_intron MGP_AJ_T0030845.1 MGP_AJ_G0018721.1 mouse_genomes_project 11 75715963 75727781 + MGP_AJ_P0030845 Myo18a protein_coding protein_coding MGP_AJ_T0030846.1 MGP_AJ_G0018721.1 mouse_genomes_project 11 75717096 75818757 + MGP_AJ_P0030846 Myo18a protein_coding protein_coding MGP_AJ_T0030847.1 MGP_AJ_G0018721.1 mouse_genomes_project 11 75722520 75818757 + MGP_AJ_P0030847 Myo18a protein_coding protein_coding MGP_AJ_T0030848.1 MGP_AJ_G0018721.1 mouse_genomes_project 11 75727639 75818757 + MGP_AJ_P0030848 Myo18a protein_coding protein_coding MGP_AJ_T0030849.1 MGP_AJ_G0018721.1 mouse_genomes_project 11 75727639 75818757 + MGP_AJ_P0030849 Myo18a protein_coding protein_coding MGP_AJ_T0030850.1 MGP_AJ_G0018721.1 mouse_genomes_project 11 75727667 75817920 + MGP_AJ_P0030850 Myo18a protein_coding protein_coding MGP_AJ_T0030851.1 MGP_AJ_G0018721.1 mouse_genomes_project 11 75727667 75817919 + MGP_AJ_P0030851 Myo18a protein_coding protein_coding MGP_AJ_T0030852.1 MGP_AJ_G0018721.1 mouse_genomes_project 11 75727690 75817625 + MGP_AJ_P0030852 Myo18a protein_coding protein_coding MGP_AJ_T0030854.1 MGP_AJ_G0018721.1 mouse_genomes_project 11 75753314 75818614 + MGP_AJ_P0030854 Myo18a protein_coding protein_coding MGP_AJ_T0030855.1 MGP_AJ_G0018721.1 mouse_genomes_project 11 75753353 75764566 + MGP_AJ_P0030855 Myo18a protein_coding protein_coding MGP_AJ_T0030856.1 MGP_AJ_G0018721.1 mouse_genomes_project 11 75753366 75818757 + MGP_AJ_P0030856 Myo18a protein_coding protein_coding MGP_AJ_T0030857.1 MGP_AJ_G0018721.1 mouse_genomes_project 11 75753366 75817886 + MGP_AJ_P0030857 Myo18a protein_coding protein_coding MGP_AJ_T0030858.1 MGP_AJ_G0018721.1 mouse_genomes_project 11 75753391 75817614 + MGP_AJ_P0030858 Myo18a protein_coding protein_coding MGP_AJ_T0030859.1 MGP_AJ_G0018721.1 mouse_genomes_project 11 75753391 75817833 + MGP_AJ_P0030859 Myo18a protein_coding protein_coding MGP_AJ_T0030860.1 MGP_AJ_G0018721.1 mouse_genomes_project 11 75763511 75818757 + MGP_AJ_P0030860 Myo18a protein_coding protein_coding MGP_AJ_T0030861.1 MGP_AJ_G0018721.1 mouse_genomes_project 11 75776558 75779646 + Myo18a protein_coding processed_transcript MGP_AJ_T0030862.1 MGP_AJ_G0018721.1 mouse_genomes_project 11 75790566 75794047 + Myo18a protein_coding processed_transcript MGP_AJ_T0030863.1 MGP_AJ_G0018721.1 mouse_genomes_project 11 75793411 75797703 + Myo18a protein_coding retained_intron MGP_AJ_T0030864.1 MGP_AJ_G0018721.1 mouse_genomes_project 11 75802275 75806233 + Myo18a protein_coding retained_intron MGP_AJ_T0030865.1 MGP_AJ_G0018721.1 mouse_genomes_project 11 75803480 75806104 + Myo18a protein_coding retained_intron MGP_AJ_T0030866.1 MGP_AJ_G0018721.1 mouse_genomes_project 11 75806642 75812139 + MGP_AJ_P0030866 Myo18a protein_coding protein_coding MGP_AJ_T0030867.1 MGP_AJ_G0018721.1 mouse_genomes_project 11 75810255 75817853 + Myo18a protein_coding retained_intron MGP_AJ_T0030868.1 MGP_AJ_G0018721.1 mouse_genomes_project 11 75813063 75817972 + Myo18a protein_coding processed_transcript MGP_AJ_T0012536.1 MGP_AJ_G0010631.1 mouse_genomes_project 11 23779706 23780230 - processed_pseudogene processed_pseudogene MGP_AJ_T0099310.1 MGP_AJ_G0037276.1 mouse_genomes_project 11 9035556 9035712 - Gm24036 snRNA snRNA MGP_AJ_T0032012.1 MGP_AJ_G0019011.1 mouse_genomes_project 11 96169671 96171939 + MGP_AJ_P0032012 B230217C12Rik protein_coding protein_coding MGP_AJ_T0032013.1 MGP_AJ_G0019011.1 mouse_genomes_project 11 96170184 96173000 + B230217C12Rik protein_coding lincRNA MGP_AJ_T0032014.1 MGP_AJ_G0019011.1 mouse_genomes_project 11 96170206 96172718 + B230217C12Rik protein_coding processed_transcript MGP_AJ_T0032015.1 MGP_AJ_G0019011.1 mouse_genomes_project 11 96170210 96171939 + B230217C12Rik protein_coding processed_transcript MGP_AJ_T0032492.1 MGP_AJ_G0019164.1 mouse_genomes_project 11 99798248 99807067 + MGP_AJ_P0032492 Aoc3 protein_coding protein_coding MGP_AJ_T0032493.1 MGP_AJ_G0019164.1 mouse_genomes_project 11 99798712 99811705 + MGP_AJ_P0032493 Aoc3 protein_coding protein_coding MGP_AJ_T0030477.1 MGP_AJ_G0018618.1 mouse_genomes_project 11 70949374 70990484 + MGP_AJ_P0030477 Ncbp3 protein_coding protein_coding MGP_AJ_T0030478.1 MGP_AJ_G0018618.1 mouse_genomes_project 11 70949461 70960258 + Ncbp3 protein_coding retained_intron MGP_AJ_T0030479.1 MGP_AJ_G0018618.1 mouse_genomes_project 11 70949464 70958333 + Ncbp3 protein_coding retained_intron MGP_AJ_T0032229.1 MGP_AJ_G0019086.1 mouse_genomes_project 11 98158782 98177699 - MGP_AJ_P0032229 Krtap4-8 protein_coding protein_coding MGP_AJ_T0027839.1 MGP_AJ_G0017969.1 mouse_genomes_project 11 2027755 2059228 - MGP_AJ_P0027839 Ewsr1 protein_coding protein_coding MGP_AJ_T0027840.1 MGP_AJ_G0017969.1 mouse_genomes_project 11 2027764 2059029 - MGP_AJ_P0027840 Ewsr1 protein_coding protein_coding MGP_AJ_T0027841.1 MGP_AJ_G0017969.1 mouse_genomes_project 11 2027963 2059004 - MGP_AJ_P0027841 Ewsr1 protein_coding protein_coding MGP_AJ_T0027842.1 MGP_AJ_G0017969.1 mouse_genomes_project 11 2028040 2028958 - Ewsr1 protein_coding processed_transcript MGP_AJ_T0027843.1 MGP_AJ_G0017969.1 mouse_genomes_project 11 2028756 2030283 - Ewsr1 protein_coding processed_transcript MGP_AJ_T0027844.1 MGP_AJ_G0017969.1 mouse_genomes_project 11 2029169 2039496 - Ewsr1 protein_coding processed_transcript MGP_AJ_T0027845.1 MGP_AJ_G0017969.1 mouse_genomes_project 11 2029479 2038489 - Ewsr1 protein_coding processed_transcript MGP_AJ_T0027846.1 MGP_AJ_G0017969.1 mouse_genomes_project 11 2029582 2039867 - Ewsr1 protein_coding processed_transcript MGP_AJ_T0027847.1 MGP_AJ_G0017969.1 mouse_genomes_project 11 2029582 2042308 - Ewsr1 protein_coding processed_transcript MGP_AJ_T0027848.1 MGP_AJ_G0017969.1 mouse_genomes_project 11 2040385 2059028 - MGP_AJ_P0027848 Ewsr1 protein_coding protein_coding MGP_AJ_T0027849.1 MGP_AJ_G0017969.1 mouse_genomes_project 11 2041989 2046008 - Ewsr1 protein_coding processed_transcript MGP_AJ_T0027850.1 MGP_AJ_G0017969.1 mouse_genomes_project 11 2050430 2059058 - MGP_AJ_P0027850 Ewsr1 protein_coding protein_coding MGP_AJ_T0027851.1 MGP_AJ_G0017969.1 mouse_genomes_project 11 2053503 2059029 - Ewsr1 protein_coding processed_transcript MGP_AJ_T0031139.1 MGP_AJ_G0018790.1 mouse_genomes_project 11 80100776 80105853 + MGP_AJ_P0031139 Ccl11 protein_coding protein_coding MGP_AJ_T0033623.1 MGP_AJ_G0019395.1 mouse_genomes_project 11 115276023 115279921 + MGP_AJ_P0033623 protein_coding protein_coding MGP_AJ_T0011797.1 MGP_AJ_G0009917.1 mouse_genomes_project 11 71873663 71874601 + MGP_AJ_P0011797 Olfr22-ps1 polymorphic_pseudogene polymorphic_pseudogene MGP_AJ_T0029009.1 MGP_AJ_G0018264.1 mouse_genomes_project 11 50871143 50871874 - MGP_AJ_P0029009 Gm9837 protein_coding protein_coding MGP_AJ_T0017218.1 MGP_AJ_G0015162.1 mouse_genomes_project 11 76255490 76256599 - Gm11193 processed_transcript processed_transcript MGP_AJ_T0030932.1 MGP_AJ_G0018735.1 mouse_genomes_project 11 76153014 76165857 + MGP_AJ_P0030932 Proca1 protein_coding protein_coding MGP_AJ_T0030933.1 MGP_AJ_G0018735.1 mouse_genomes_project 11 76154326 76165820 + MGP_AJ_P0030933 Proca1 protein_coding protein_coding MGP_AJ_T0030934.1 MGP_AJ_G0018735.1 mouse_genomes_project 11 76154356 76166116 + MGP_AJ_P0030934 Proca1 protein_coding protein_coding MGP_AJ_T0030935.1 MGP_AJ_G0018735.1 mouse_genomes_project 11 76164779 76165444 + Proca1 protein_coding processed_transcript MGP_AJ_T0031345.1 MGP_AJ_G0018848.1 mouse_genomes_project 11 83475128 83516764 + MGP_AJ_P0031345 Ppm1d protein_coding protein_coding MGP_AJ_T0031346.1 MGP_AJ_G0018848.1 mouse_genomes_project 11 83476048 83506936 + MGP_AJ_P0031346 Ppm1d protein_coding protein_coding MGP_AJ_T0029571.1 MGP_AJ_G0018419.1 mouse_genomes_project 11 59972374 59989844 + MGP_AJ_P0029571 Adora2b protein_coding protein_coding MGP_AJ_T0032068.1 MGP_AJ_G0019024.1 mouse_genomes_project 11 96730528 96731671 + MGP_AJ_P0032068 Tcap protein_coding protein_coding MGP_AJ_T0033732.1 MGP_AJ_G0019415.1 mouse_genomes_project 11 116337342 116341988 + MGP_AJ_P0033732 Gm11733 protein_coding protein_coding MGP_AJ_T0100619.1 MGP_AJ_G0038585.1 mouse_genomes_project 11 81475147 81475279 - Gm23951 snoRNA snoRNA MGP_AJ_T0032432.1 MGP_AJ_G0019153.1 mouse_genomes_project 11 99632361 99640193 + Cntnap1 protein_coding processed_transcript MGP_AJ_T0032434.1 MGP_AJ_G0019153.1 mouse_genomes_project 11 99637943 99653678 + MGP_AJ_P0032434 Cntnap1 protein_coding protein_coding MGP_AJ_T0031142.1 MGP_AJ_G0018792.1 mouse_genomes_project 11 80158247 80159862 + MGP_AJ_P0031142 Ccl8 protein_coding protein_coding MGP_AJ_T0100633.1 MGP_AJ_G0038599.1 mouse_genomes_project 11 114554514 114554649 + Gm23699 snoRNA snoRNA MGP_AJ_T0031433.1 MGP_AJ_G0018869.1 mouse_genomes_project 11 85398577 85532078 - MGP_AJ_P0031433 Ppm1e protein_coding protein_coding MGP_AJ_T0031434.1 MGP_AJ_G0018869.1 mouse_genomes_project 11 85414624 85531692 - Ppm1e protein_coding processed_transcript MGP_AJ_T0030519.1 MGP_AJ_G0018633.1 mouse_genomes_project 11 71400443 71412896 - MGP_AJ_P0030519 protein_coding protein_coding MGP_AJ_T0012732.1 MGP_AJ_G0010827.1 mouse_genomes_project 11 95345825 95346302 + processed_pseudogene processed_pseudogene MGP_AJ_T0029707.1 MGP_AJ_G0018451.1 mouse_genomes_project 11 64779234 64789397 + MGP_AJ_P0029707 Tmem220 protein_coding protein_coding MGP_AJ_T0029708.1 MGP_AJ_G0018451.1 mouse_genomes_project 11 64779234 64788871 + MGP_AJ_P0029708 Tmem220 protein_coding protein_coding MGP_AJ_T0031547.1 MGP_AJ_G0018894.1 mouse_genomes_project 11 87143673 87176130 - MGP_AJ_P0031547 Scpep1 protein_coding unknown_likely_coding MGP_AJ_T0031548.1 MGP_AJ_G0018894.1 mouse_genomes_project 11 87143676 87176226 - MGP_AJ_P0031548 Scpep1 protein_coding protein_coding MGP_AJ_T0009696.1 MGP_AJ_G0007818.1 mouse_genomes_project 11 66780299 66780404 - Mir3062 miRNA miRNA MGP_AJ_T0029234.1 MGP_AJ_G0018332.1 mouse_genomes_project 11 56060791 56064163 + MGP_AJ_P0029234 Olfr325 protein_coding protein_coding MGP_AJ_T0029235.1 MGP_AJ_G0018332.1 mouse_genomes_project 11 56063738 56064803 + MGP_AJ_P0029235 Olfr325 protein_coding protein_coding MGP_AJ_T0028725.1 MGP_AJ_G0018191.1 mouse_genomes_project 11 46371372 46393023 - MGP_AJ_P0028725 Btnl9 protein_coding protein_coding MGP_AJ_T0028726.1 MGP_AJ_G0018191.1 mouse_genomes_project 11 46374841 46392909 - MGP_AJ_P0028726 Btnl9 protein_coding protein_coding MGP_AJ_T0028727.1 MGP_AJ_G0018191.1 mouse_genomes_project 11 46375109 46376463 - Btnl9 protein_coding retained_intron MGP_AJ_T0028728.1 MGP_AJ_G0018191.1 mouse_genomes_project 11 46380613 46392901 - MGP_AJ_P0028728 Btnl9 protein_coding protein_coding MGP_AJ_T0028729.1 MGP_AJ_G0018191.1 mouse_genomes_project 11 46388162 46392931 - Btnl9 protein_coding processed_transcript MGP_AJ_T0011295.1 MGP_AJ_G0009417.1 mouse_genomes_project 11 14449025 14449349 + Gm23959 misc_RNA misc_RNA MGP_AJ_T0098532.1 MGP_AJ_G0036516.1 mouse_genomes_project 11 3235049 3235163 + n-R5s67 rRNA rRNA MGP_AJ_T0030733.1 MGP_AJ_G0018695.1 mouse_genomes_project 11 74121322 74158642 + Fam57a protein_coding processed_transcript MGP_AJ_T0030734.1 MGP_AJ_G0018695.1 mouse_genomes_project 11 74144611 74145573 + Fam57a protein_coding retained_intron MGP_AJ_T0030735.1 MGP_AJ_G0018695.1 mouse_genomes_project 11 74144648 74152666 + MGP_AJ_P0030735 Fam57a protein_coding protein_coding MGP_AJ_T0030736.1 MGP_AJ_G0018695.1 mouse_genomes_project 11 74144681 74152814 + MGP_AJ_P0030736 Fam57a protein_coding protein_coding MGP_AJ_T0009653.1 MGP_AJ_G0007775.1 mouse_genomes_project 11 3368648 3368712 + Mir7651 miRNA miRNA MGP_AJ_T0009661.1 MGP_AJ_G0007783.1 mouse_genomes_project 11 23126176 23126285 + Mir6372 miRNA miRNA MGP_AJ_T0030941.1 MGP_AJ_G0018738.1 mouse_genomes_project 11 76224295 76226579 + 2610507B11Rik protein_coding processed_transcript MGP_AJ_T0030942.1 MGP_AJ_G0018738.1 mouse_genomes_project 11 76224295 76253266 + MGP_AJ_P0030942 2610507B11Rik protein_coding protein_coding MGP_AJ_T0030943.1 MGP_AJ_G0018738.1 mouse_genomes_project 11 76225018 76226513 + 2610507B11Rik protein_coding retained_intron MGP_AJ_T0030944.1 MGP_AJ_G0018738.1 mouse_genomes_project 11 76228998 76231047 + 2610507B11Rik protein_coding retained_intron MGP_AJ_T0030945.1 MGP_AJ_G0018738.1 mouse_genomes_project 11 76234837 76236291 + 2610507B11Rik protein_coding retained_intron MGP_AJ_T0030946.1 MGP_AJ_G0018738.1 mouse_genomes_project 11 76236017 76237754 + MGP_AJ_P0030946 2610507B11Rik protein_coding nonsense_mediated_decay MGP_AJ_T0030947.1 MGP_AJ_G0018738.1 mouse_genomes_project 11 76248079 76250591 + 2610507B11Rik protein_coding retained_intron MGP_AJ_T0030948.1 MGP_AJ_G0018738.1 mouse_genomes_project 11 76250547 76252353 + 2610507B11Rik protein_coding retained_intron MGP_AJ_T0009666.1 MGP_AJ_G0007788.1 mouse_genomes_project 11 30058646 30058734 - Gm26052 miRNA miRNA MGP_AJ_T0027981.1 MGP_AJ_G0018000.1 mouse_genomes_project 11 3574968 3583206 - MGP_AJ_P0027981 protein_coding protein_coding MGP_AJ_T0027982.1 MGP_AJ_G0018000.1 mouse_genomes_project 11 3575037 3576537 - MGP_AJ_P0027982 protein_coding nonsense_mediated_decay MGP_AJ_T0027983.1 MGP_AJ_G0018000.1 mouse_genomes_project 11 3575048 3577089 - MGP_AJ_P0027983 protein_coding nonsense_mediated_decay MGP_AJ_T0009759.1 MGP_AJ_G0007881.1 mouse_genomes_project 11 105415981 105416082 - Gm25994 miRNA miRNA MGP_AJ_T0099322.1 MGP_AJ_G0037288.1 mouse_genomes_project 11 33852636 33852742 + Gm22127 snRNA snRNA MGP_AJ_T0006222.1 MGP_AJ_G0005195.1 mouse_genomes_project 11 37180890 37525510 + lincRNA lincRNA MGP_AJ_T0028873.1 MGP_AJ_G0018226.1 mouse_genomes_project 11 48224895 48227950 - MGP_AJ_P0028873 4933414I15Rik protein_coding protein_coding MGP_AJ_T0028874.1 MGP_AJ_G0018226.1 mouse_genomes_project 11 48225882 48227926 - 4933414I15Rik protein_coding processed_transcript MGP_AJ_T0029834.1 MGP_AJ_G0018481.1 mouse_genomes_project 11 66775388 66798613 - MGP_AJ_P0029834 Pfas protein_coding protein_coding MGP_AJ_T0029835.1 MGP_AJ_G0018481.1 mouse_genomes_project 11 66775391 66783999 - Pfas protein_coding retained_intron MGP_AJ_T0029836.1 MGP_AJ_G0018481.1 mouse_genomes_project 11 66776151 66780332 - Pfas protein_coding retained_intron MGP_AJ_T0029837.1 MGP_AJ_G0018481.1 mouse_genomes_project 11 66777672 66781072 - MGP_AJ_P0029837 Pfas protein_coding protein_coding MGP_AJ_T0029838.1 MGP_AJ_G0018481.1 mouse_genomes_project 11 66780446 66781548 - Pfas protein_coding retained_intron MGP_AJ_T0029839.1 MGP_AJ_G0018481.1 mouse_genomes_project 11 66782704 66787389 - MGP_AJ_P0029839 Pfas protein_coding protein_coding MGP_AJ_T0029840.1 MGP_AJ_G0018481.1 mouse_genomes_project 11 66786678 66798604 - Pfas protein_coding retained_intron MGP_AJ_T0032424.1 MGP_AJ_G0019150.1 mouse_genomes_project 11 99578330 99584144 + MGP_AJ_P0032424 Tubg1 protein_coding protein_coding MGP_AJ_T0100629.1 MGP_AJ_G0038595.1 mouse_genomes_project 11 102823648 102823781 - Gm22743 snoRNA snoRNA MGP_AJ_T0012514.1 MGP_AJ_G0010609.1 mouse_genomes_project 11 17765361 17765568 - processed_pseudogene processed_pseudogene MGP_AJ_T0003351.1 MGP_AJ_G0003086.1 mouse_genomes_project 11 116746321 116763803 + Gm11725 antisense antisense MGP_AJ_T0012602.1 MGP_AJ_G0010697.1 mouse_genomes_project 11 49555262 49558015 + processed_pseudogene processed_pseudogene MGP_AJ_T0028498.1 MGP_AJ_G0018124.1 mouse_genomes_project 11 31335199 31898672 - MGP_AJ_P0028498 Dock2 protein_coding protein_coding MGP_AJ_T0028499.1 MGP_AJ_G0018124.1 mouse_genomes_project 11 31338943 31340055 - Dock2 protein_coding retained_intron MGP_AJ_T0028500.1 MGP_AJ_G0018124.1 mouse_genomes_project 11 31381324 31898672 - MGP_AJ_P0028500 Dock2 protein_coding protein_coding MGP_AJ_T0028501.1 MGP_AJ_G0018124.1 mouse_genomes_project 11 31415929 31420915 - Dock2 protein_coding retained_intron MGP_AJ_T0028504.1 MGP_AJ_G0018124.1 mouse_genomes_project 11 31470705 31804709 - MGP_AJ_P0028504 Dock2 protein_coding protein_coding MGP_AJ_T0028505.1 MGP_AJ_G0018124.1 mouse_genomes_project 11 31547508 31898663 - Dock2 protein_coding retained_intron MGP_AJ_T0028506.1 MGP_AJ_G0018124.1 mouse_genomes_project 11 31547508 31898672 - MGP_AJ_P0028506 Dock2 protein_coding nonsense_mediated_decay MGP_AJ_T0009771.1 MGP_AJ_G0007893.1 mouse_genomes_project 11 118291563 118291653 + Mir1932 miRNA miRNA MGP_AJ_T0032194.1 MGP_AJ_G0019054.1 mouse_genomes_project 11 97644504 97649745 - MGP_AJ_P0032194 Krt24 protein_coding protein_coding MGP_AJ_T0029889.1 MGP_AJ_G0018492.1 mouse_genomes_project 11 66976733 66990665 - MGP_AJ_P0029889 Alox8 protein_coding protein_coding MGP_AJ_T0029890.1 MGP_AJ_G0018492.1 mouse_genomes_project 11 66977891 66990631 - MGP_AJ_P0029890 Alox8 protein_coding protein_coding MGP_AJ_T0029891.1 MGP_AJ_G0018492.1 mouse_genomes_project 11 66982693 66990633 - Alox8 protein_coding retained_intron MGP_AJ_T0029892.1 MGP_AJ_G0018492.1 mouse_genomes_project 11 66984358 66990206 - Alox8 protein_coding retained_intron MGP_AJ_T0028645.1 MGP_AJ_G0018161.1 mouse_genomes_project 11 43322446 43340885 - MGP_AJ_P0028645 Nipal4 protein_coding protein_coding MGP_AJ_T0009755.1 MGP_AJ_G0007877.1 mouse_genomes_project 11 102823714 102823785 - miRNA miRNA MGP_AJ_T0032218.1 MGP_AJ_G0019075.1 mouse_genomes_project 11 97990559 97996800 - MGP_AJ_P0032218 protein_coding protein_coding MGP_AJ_T0028713.1 MGP_AJ_G0018185.1 mouse_genomes_project 11 46256094 46265534 - MGP_AJ_P0028713 Tgtp2 protein_coding protein_coding MGP_AJ_T0012570.1 MGP_AJ_G0010665.1 mouse_genomes_project 11 37593623 37594285 - processed_pseudogene processed_pseudogene MGP_AJ_T0006372.1 MGP_AJ_G0005308.1 mouse_genomes_project 11 116385380 116394153 + Gm11734 lincRNA lincRNA MGP_AJ_T0029949.1 MGP_AJ_G0018507.1 mouse_genomes_project 11 67413478 67419568 - MGP_AJ_P0029949 Atp1b2 protein_coding protein_coding MGP_AJ_T0029950.1 MGP_AJ_G0018507.1 mouse_genomes_project 11 67413483 67419681 - Atp1b2 protein_coding processed_transcript MGP_AJ_T0029951.1 MGP_AJ_G0018507.1 mouse_genomes_project 11 67414408 67416484 - MGP_AJ_P0029951 Atp1b2 protein_coding protein_coding MGP_AJ_T0029952.1 MGP_AJ_G0018507.1 mouse_genomes_project 11 67415100 67417356 - Atp1b2 protein_coding processed_transcript MGP_AJ_T0029953.1 MGP_AJ_G0018507.1 mouse_genomes_project 11 67415886 67416905 - Atp1b2 protein_coding processed_transcript MGP_AJ_T0100580.1 MGP_AJ_G0038546.1 mouse_genomes_project 11 24006892 24007472 - Gm24850 snoRNA snoRNA MGP_AJ_T0012665.1 MGP_AJ_G0010760.1 mouse_genomes_project 11 68619221 68619494 - processed_pseudogene processed_pseudogene MGP_AJ_T0012766.1 MGP_AJ_G0010861.1 mouse_genomes_project 11 105972654 105973005 + processed_pseudogene processed_pseudogene MGP_AJ_T0012713.1 MGP_AJ_G0010808.1 mouse_genomes_project 11 86132168 86132341 + processed_pseudogene processed_pseudogene MGP_AJ_T0012780.1 MGP_AJ_G0010875.1 mouse_genomes_project 11 114301914 114302073 + processed_pseudogene processed_pseudogene MGP_AJ_T0033210.1 MGP_AJ_G0019312.1 mouse_genomes_project 11 108960407 109029040 - MGP_AJ_P0033210 Abca5 protein_coding protein_coding MGP_AJ_T0033211.1 MGP_AJ_G0019312.1 mouse_genomes_project 11 108977873 109028984 - MGP_AJ_P0033211 Abca5 protein_coding protein_coding MGP_AJ_T0033212.1 MGP_AJ_G0019312.1 mouse_genomes_project 11 109000580 109029007 - Abca5 protein_coding retained_intron MGP_AJ_T0033213.1 MGP_AJ_G0019312.1 mouse_genomes_project 11 109011324 109029002 - MGP_AJ_P0033213 Abca5 protein_coding protein_coding MGP_AJ_T0033214.1 MGP_AJ_G0019312.1 mouse_genomes_project 11 109016977 109029078 - Abca5 protein_coding processed_transcript MGP_AJ_T0100570.1 MGP_AJ_G0038536.1 mouse_genomes_project 11 8391877 8392005 - Gm26458 snoRNA snoRNA MGP_AJ_T0003132.1 MGP_AJ_G0002905.1 mouse_genomes_project 11 21030475 21046270 - Gm12064 antisense antisense MGP_AJ_T0032243.1 MGP_AJ_G0019100.1 mouse_genomes_project 11 98390152 98392040 - MGP_AJ_P0032243 Krtap16-1 protein_coding protein_coding MGP_AJ_T0012594.1 MGP_AJ_G0010689.1 mouse_genomes_project 11 46958893 46959380 + processed_pseudogene processed_pseudogene MGP_AJ_T0012704.1 MGP_AJ_G0010799.1 mouse_genomes_project 11 83233163 83233690 - processed_pseudogene processed_pseudogene MGP_AJ_T0009708.1 MGP_AJ_G0007830.1 mouse_genomes_project 11 68619254 68619347 - Gm22760 miRNA miRNA MGP_AJ_T0033440.1 MGP_AJ_G0019364.1 mouse_genomes_project 11 114420831 114424993 + MGP_AJ_P0033440 Mrps7 protein_coding protein_coding MGP_AJ_T0033441.1 MGP_AJ_G0019364.1 mouse_genomes_project 11 114421773 114423908 + Mrps7 protein_coding processed_transcript MGP_AJ_T0029031.1 MGP_AJ_G0018270.1 mouse_genomes_project 11 51034683 51038823 - MGP_AJ_P0029031 Il13 protein_coding protein_coding MGP_AJ_T0032259.1 MGP_AJ_G0019111.1 mouse_genomes_project 11 98546452 98552130 - MGP_AJ_P0032259 Krt19 protein_coding protein_coding MGP_AJ_T0032260.1 MGP_AJ_G0019111.1 mouse_genomes_project 11 98546549 98549723 - Krt19 protein_coding processed_transcript MGP_AJ_T0032261.1 MGP_AJ_G0019111.1 mouse_genomes_project 11 98547762 98554672 - Krt19 protein_coding processed_transcript MGP_AJ_T0011302.1 MGP_AJ_G0009424.1 mouse_genomes_project 11 57685501 57685628 + Gm27511 misc_RNA misc_RNA MGP_AJ_T0031689.1 MGP_AJ_G0018927.1 mouse_genomes_project 11 92734128 92754160 - MGP_AJ_P0031689 Mycbpap protein_coding protein_coding MGP_AJ_T0031690.1 MGP_AJ_G0018927.1 mouse_genomes_project 11 92734130 92754160 - Mycbpap protein_coding retained_intron MGP_AJ_T0031691.1 MGP_AJ_G0018927.1 mouse_genomes_project 11 92734130 92736331 - Mycbpap protein_coding processed_transcript MGP_AJ_T0031692.1 MGP_AJ_G0018927.1 mouse_genomes_project 11 92734130 92740116 - MGP_AJ_P0031692 Mycbpap protein_coding protein_coding MGP_AJ_T0031693.1 MGP_AJ_G0018927.1 mouse_genomes_project 11 92735763 92736318 - Mycbpap protein_coding retained_intron MGP_AJ_T0031694.1 MGP_AJ_G0018927.1 mouse_genomes_project 11 92740456 92742930 - Mycbpap protein_coding retained_intron MGP_AJ_T0027915.1 MGP_AJ_G0017986.1 mouse_genomes_project 11 2928627 2940734 + MGP_AJ_P0027915 Ykt6 protein_coding protein_coding MGP_AJ_T0027916.1 MGP_AJ_G0017986.1 mouse_genomes_project 11 2932269 2936161 + Ykt6 protein_coding processed_transcript MGP_AJ_T0029622.1 MGP_AJ_G0018428.1 mouse_genomes_project 11 60386614 60403408 + MGP_AJ_P0029622 Mmgt2 protein_coding protein_coding MGP_AJ_T0029623.1 MGP_AJ_G0018428.1 mouse_genomes_project 11 60386763 60400718 + Mmgt2 protein_coding retained_intron MGP_AJ_T0029624.1 MGP_AJ_G0018428.1 mouse_genomes_project 11 60386767 60403338 + Mmgt2 protein_coding processed_transcript MGP_AJ_T0029625.1 MGP_AJ_G0018428.1 mouse_genomes_project 11 60386770 60403270 + Mmgt2 protein_coding processed_transcript MGP_AJ_T0029626.1 MGP_AJ_G0018428.1 mouse_genomes_project 11 60386781 60403478 + MGP_AJ_P0029626 Mmgt2 protein_coding protein_coding MGP_AJ_T0029627.1 MGP_AJ_G0018428.1 mouse_genomes_project 11 60386785 60403785 + MGP_AJ_P0029627 Mmgt2 protein_coding protein_coding MGP_AJ_T0029628.1 MGP_AJ_G0018428.1 mouse_genomes_project 11 60387399 60404906 + MGP_AJ_P0029628 Mmgt2 protein_coding protein_coding MGP_AJ_T0003144.1 MGP_AJ_G0002916.1 mouse_genomes_project 11 40378440 40381143 - Gm12144 antisense antisense MGP_AJ_T0032223.1 MGP_AJ_G0019080.1 mouse_genomes_project 11 98035672 98036684 - MGP_AJ_P0032223 Gm11563 protein_coding protein_coding MGP_AJ_T0003318.1 MGP_AJ_G0003059.1 mouse_genomes_project 11 105447525 105448864 - Gm11706 antisense antisense MGP_AJ_T0029612.1 MGP_AJ_G0018425.1 mouse_genomes_project 11 60283862 60286574 + MGP_AJ_P0029612 Ubb protein_coding protein_coding MGP_AJ_T0029613.1 MGP_AJ_G0018425.1 mouse_genomes_project 11 60284367 60286215 + MGP_AJ_P0029613 Ubb protein_coding protein_coding MGP_AJ_T0100604.1 MGP_AJ_G0038570.1 mouse_genomes_project 11 69091840 69091974 - Gm23266 snoRNA snoRNA MGP_AJ_T0030482.1 MGP_AJ_G0018620.1 mouse_genomes_project 11 71037795 71040605 - MGP_AJ_P0030482 Gsg2 protein_coding protein_coding MGP_AJ_T0099326.1 MGP_AJ_G0037292.1 mouse_genomes_project 11 49305432 49305540 + Gm26061 snRNA snRNA MGP_AJ_T0032607.1 MGP_AJ_G0019189.1 mouse_genomes_project 11 100618102 100619249 - MGP_AJ_P0032607 Pyy protein_coding protein_coding MGP_AJ_T0032608.1 MGP_AJ_G0019189.1 mouse_genomes_project 11 100618102 100619259 - MGP_AJ_P0032608 Pyy protein_coding protein_coding MGP_AJ_T0032609.1 MGP_AJ_G0019189.1 mouse_genomes_project 11 100618106 100618843 - MGP_AJ_P0032609 Pyy protein_coding protein_coding MGP_AJ_T0032610.1 MGP_AJ_G0019189.1 mouse_genomes_project 11 100618387 100619259 - Pyy protein_coding retained_intron MGP_AJ_T0029111.1 MGP_AJ_G0018288.1 mouse_genomes_project 11 52289639 52323480 - MGP_AJ_P0029111 Lyrm7 protein_coding nonsense_mediated_decay MGP_AJ_T0029112.1 MGP_AJ_G0018288.1 mouse_genomes_project 11 52303360 52323172 - MGP_AJ_P0029112 Lyrm7 protein_coding protein_coding MGP_AJ_T0029113.1 MGP_AJ_G0018288.1 mouse_genomes_project 11 52303361 52323152 - MGP_AJ_P0029113 Lyrm7 protein_coding nonsense_mediated_decay MGP_AJ_T0029114.1 MGP_AJ_G0018288.1 mouse_genomes_project 11 52304640 52313980 - Lyrm7 protein_coding retained_intron MGP_AJ_T0029115.1 MGP_AJ_G0018288.1 mouse_genomes_project 11 52304680 52323173 - Lyrm7 protein_coding processed_transcript MGP_AJ_T0029116.1 MGP_AJ_G0018288.1 mouse_genomes_project 11 52313667 52323149 - Lyrm7 protein_coding retained_intron MGP_AJ_T0028448.1 MGP_AJ_G0018104.1 mouse_genomes_project 11 29324026 29325739 + MGP_AJ_P0028448 Hba-x protein_coding protein_coding MGP_AJ_T0028449.1 MGP_AJ_G0018104.1 mouse_genomes_project 11 29324518 29325739 + MGP_AJ_P0028449 Hba-x protein_coding protein_coding MGP_AJ_T0006253.1 MGP_AJ_G0005223.1 mouse_genomes_project 11 59670401 59672223 + Gm12273 lincRNA lincRNA MGP_AJ_T0098389.1 MGP_AJ_G0036373.1 mouse_genomes_project 11 119537761 119538262 - pseudogene pseudogene MGP_AJ_T0012593.1 MGP_AJ_G0010688.1 mouse_genomes_project 11 46619072 46619984 + processed_pseudogene processed_pseudogene MGP_AJ_T0017284.1 MGP_AJ_G0015194.1 mouse_genomes_project 11 116277453 116290488 + Gm11732 processed_transcript processed_transcript MGP_AJ_T0034473.1 MGP_AJ_G0019596.1 mouse_genomes_project 12 21645114 21690312 + MGP_AJ_P0034473 Grhl1 protein_coding protein_coding MGP_AJ_T0034474.1 MGP_AJ_G0019596.1 mouse_genomes_project 12 21653553 21690316 + MGP_AJ_P0034474 Grhl1 protein_coding protein_coding MGP_AJ_T0034858.1 MGP_AJ_G0019738.1 mouse_genomes_project 12 62160471 62172166 - MGP_AJ_P0034858 Fkbp3 protein_coding protein_coding MGP_AJ_T0100659.1 MGP_AJ_G0038625.1 mouse_genomes_project 12 46593094 46593222 - Gm25015 snoRNA snoRNA MGP_AJ_T0102273.1 MGP_AJ_G0040015.1 mouse_genomes_project 12 101440242 101513010 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0035974.1 MGP_AJ_G0020100.1 mouse_genomes_project 12 109858412 109938954 - MGP_AJ_P0035974 Ppp1r13b protein_coding protein_coding MGP_AJ_T0035975.1 MGP_AJ_G0020100.1 mouse_genomes_project 12 109895281 109938939 - MGP_AJ_P0035975 Ppp1r13b protein_coding protein_coding MGP_AJ_T0035905.1 MGP_AJ_G0020078.1 mouse_genomes_project 12 108841110 108863195 + MGP_AJ_P0035905 Zfp839 protein_coding protein_coding MGP_AJ_T0035906.1 MGP_AJ_G0020078.1 mouse_genomes_project 12 108851234 108864735 + MGP_AJ_P0035906 Zfp839 protein_coding unknown_likely_coding MGP_AJ_T0035829.1 MGP_AJ_G0020056.1 mouse_genomes_project 12 106135935 106205348 - MGP_AJ_P0035829 Ccdc85c protein_coding protein_coding MGP_AJ_T0102270.1 MGP_AJ_G0040013.1 mouse_genomes_project 12 72827759 72835036 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0102271.1 MGP_AJ_G0040013.1 mouse_genomes_project 12 72828329 72835059 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0034817.1 MGP_AJ_G0019726.1 mouse_genomes_project 12 56120475 56139472 - MGP_AJ_P0034817 Trappc6b protein_coding protein_coding MGP_AJ_T0035702.1 MGP_AJ_G0020002.1 mouse_genomes_project 12 100962283 100996908 - MGP_AJ_P0035702 Asb2 protein_coding protein_coding MGP_AJ_T0035703.1 MGP_AJ_G0020002.1 mouse_genomes_project 12 100962287 100976725 - Asb2 protein_coding retained_intron MGP_AJ_T0035704.1 MGP_AJ_G0020002.1 mouse_genomes_project 12 100962287 100979514 - MGP_AJ_P0035704 Asb2 protein_coding protein_coding MGP_AJ_T0035705.1 MGP_AJ_G0020002.1 mouse_genomes_project 12 100976009 100977875 - Asb2 protein_coding processed_transcript MGP_AJ_T0035940.1 MGP_AJ_G0020091.1 mouse_genomes_project 12 109547910 109556171 + MGP_AJ_P0035940 Eif5 protein_coding protein_coding MGP_AJ_T0035941.1 MGP_AJ_G0020091.1 mouse_genomes_project 12 109548163 109554578 + MGP_AJ_P0035941 Eif5 protein_coding protein_coding MGP_AJ_T0035508.1 MGP_AJ_G0019947.1 mouse_genomes_project 12 85003040 85026249 - MGP_AJ_P0035508 Snw1 protein_coding protein_coding MGP_AJ_T0009839.1 MGP_AJ_G0007961.1 mouse_genomes_project 12 107513611 107513702 + Mir431 miRNA miRNA MGP_AJ_T0003395.1 MGP_AJ_G0003115.1 mouse_genomes_project 12 54541510 54550426 - Gm16246 antisense antisense MGP_AJ_T0017333.1 MGP_AJ_G0015216.1 mouse_genomes_project 12 109749202 109749945 + Gm15995 processed_transcript processed_transcript MGP_AJ_T0035781.1 MGP_AJ_G0020042.1 mouse_genomes_project 12 103059930 103063391 + MGP_AJ_P0035781 Tcl1b4 protein_coding protein_coding MGP_AJ_T0000079.1 MGP_AJ_G0000064.1 mouse_genomes_project 12 112415027 112415323 - MGP_AJ_P0000079 Ighv3-3 IG_V_gene IG_V_gene MGP_AJ_T0000080.1 MGP_AJ_G0000064.1 mouse_genomes_project 12 112415027 112415461 - MGP_AJ_P0000080 Ighv3-3 IG_V_gene IG_V_gene MGP_AJ_T0035509.1 MGP_AJ_G0019948.1 mouse_genomes_project 12 85467245 85468093 + MGP_AJ_P0035509 protein_coding protein_coding MGP_AJ_T0006467.1 MGP_AJ_G0005387.1 mouse_genomes_project 12 105649503 105661335 - 4930465M20Rik lincRNA lincRNA MGP_AJ_T0006468.1 MGP_AJ_G0005387.1 mouse_genomes_project 12 105655278 105661343 - 4930465M20Rik lincRNA lincRNA MGP_AJ_T0009799.1 MGP_AJ_G0007921.1 mouse_genomes_project 12 66481421 66481491 - miRNA miRNA MGP_AJ_T0099394.1 MGP_AJ_G0037360.1 mouse_genomes_project 12 11803097 11803201 + Gm26449 snRNA snRNA MGP_AJ_T0012829.1 MGP_AJ_G0010924.1 mouse_genomes_project 12 71533907 71535813 + processed_pseudogene processed_pseudogene MGP_AJ_T0009836.1 MGP_AJ_G0007958.1 mouse_genomes_project 12 107509478 107509572 + Mir665 miRNA miRNA MGP_AJ_T0000072.1 MGP_AJ_G0000058.1 mouse_genomes_project 12 112196693 112197123 - MGP_AJ_P0000072 Ighv14-2 IG_V_gene IG_V_gene MGP_AJ_T0100701.1 MGP_AJ_G0038667.1 mouse_genomes_project 12 107605429 107605504 + Gm23736 snoRNA snoRNA MGP_AJ_T0034446.1 MGP_AJ_G0019586.1 mouse_genomes_project 12 14256432 14338663 + MGP_AJ_P0034446 Nol10 protein_coding protein_coding MGP_AJ_T0000042.1 MGP_AJ_G0000033.1 mouse_genomes_project 12 111466672 111466725 - MGP_AJ_P0000042 Ighj1 IG_J_gene IG_J_gene MGP_AJ_T0017302.1 MGP_AJ_G0015206.1 mouse_genomes_project 12 71098685 71121831 - Gm15283 processed_transcript processed_transcript MGP_AJ_T0034855.1 MGP_AJ_G0019737.1 mouse_genomes_project 12 62134043 62161422 + MGP_AJ_P0034855 Prpf39 protein_coding protein_coding MGP_AJ_T0034856.1 MGP_AJ_G0019737.1 mouse_genomes_project 12 62134076 62161422 + MGP_AJ_P0034856 Prpf39 protein_coding nonsense_mediated_decay MGP_AJ_T0034857.1 MGP_AJ_G0019737.1 mouse_genomes_project 12 62141836 62159525 + MGP_AJ_P0034857 Prpf39 protein_coding unknown_likely_coding MGP_AJ_T0034639.1 MGP_AJ_G0019658.1 mouse_genomes_project 12 33460517 33464796 + MGP_AJ_P0034639 Sostdc1 protein_coding protein_coding MGP_AJ_T0006425.1 MGP_AJ_G0005351.1 mouse_genomes_project 12 75395489 75408654 + lincRNA lincRNA MGP_AJ_T0006426.1 MGP_AJ_G0005351.1 mouse_genomes_project 12 75396978 75399361 + lincRNA lincRNA MGP_AJ_T0006427.1 MGP_AJ_G0005351.1 mouse_genomes_project 12 75399281 75408753 + lincRNA lincRNA MGP_AJ_T0034294.1 MGP_AJ_G0019528.1 mouse_genomes_project 12 832783 838451 + MGP_AJ_P0034294 Pomc protein_coding protein_coding MGP_AJ_T0000066.1 MGP_AJ_G0000052.1 mouse_genomes_project 12 111975008 111975454 - MGP_AJ_P0000066 Ighv2-9 IG_V_gene IG_V_gene MGP_AJ_T0034885.1 MGP_AJ_G0019747.1 mouse_genomes_project 12 66300599 66309770 - MGP_AJ_P0034885 Dnaaf2 protein_coding protein_coding MGP_AJ_T0011342.1 MGP_AJ_G0009464.1 mouse_genomes_project 12 117226853 117227052 + Gm22537 misc_RNA misc_RNA MGP_AJ_T0100653.1 MGP_AJ_G0038619.1 mouse_genomes_project 12 36603561 36603688 + Gm24069 snoRNA snoRNA MGP_AJ_T0036066.1 MGP_AJ_G0020134.1 mouse_genomes_project 12 114561857 114574821 + MGP_AJ_P0036066 Zfp386 protein_coding protein_coding MGP_AJ_T0036067.1 MGP_AJ_G0020134.1 mouse_genomes_project 12 114561897 114569328 + Zfp386 protein_coding retained_intron MGP_AJ_T0036068.1 MGP_AJ_G0020134.1 mouse_genomes_project 12 114561909 114577606 + MGP_AJ_P0036068 Zfp386 protein_coding protein_coding MGP_AJ_T0036069.1 MGP_AJ_G0020134.1 mouse_genomes_project 12 114561962 114565850 + Zfp386 protein_coding retained_intron MGP_AJ_T0009833.1 MGP_AJ_G0007955.1 mouse_genomes_project 12 107508953 107509050 + Mir337 miRNA miRNA MGP_AJ_T0006392.1 MGP_AJ_G0005327.1 mouse_genomes_project 12 8327946 8334519 + 4930511A02Rik lincRNA lincRNA MGP_AJ_T0100660.1 MGP_AJ_G0038626.1 mouse_genomes_project 12 48113666 48113783 + Gm22088 snoRNA snoRNA MGP_AJ_T0009832.1 MGP_AJ_G0007954.1 mouse_genomes_project 12 107503409 107503492 + Mir493 miRNA miRNA MGP_AJ_T0017309.1 MGP_AJ_G0015211.1 mouse_genomes_project 12 97833080 97838650 + Gm10433 processed_transcript processed_transcript MGP_AJ_T0017310.1 MGP_AJ_G0015211.1 mouse_genomes_project 12 97833885 97837855 + Gm10433 processed_transcript processed_transcript MGP_AJ_T0098552.1 MGP_AJ_G0036536.1 mouse_genomes_project 12 9016059 9016190 + Gm26171 rRNA rRNA MGP_AJ_T0000058.1 MGP_AJ_G0000046.1 mouse_genomes_project 12 111642633 111643120 - MGP_AJ_P0000058 Ighv5-2 IG_V_gene IG_V_gene MGP_AJ_T0000059.1 MGP_AJ_G0000046.1 mouse_genomes_project 12 111642633 111643120 - MGP_AJ_P0000059 Ighv5-2 IG_V_gene IG_V_gene MGP_AJ_T0100706.1 MGP_AJ_G0038672.1 mouse_genomes_project 12 107611525 107611597 + Gm25854 snoRNA snoRNA MGP_AJ_T0100650.1 MGP_AJ_G0038616.1 mouse_genomes_project 12 30578473 30578605 - Gm23529 snoRNA snoRNA MGP_AJ_T0099424.1 MGP_AJ_G0037390.1 mouse_genomes_project 12 76534753 76534858 - Gm27297 snRNA snRNA MGP_AJ_T0034908.1 MGP_AJ_G0019757.1 mouse_genomes_project 12 66804293 66841205 - MGP_AJ_P0034908 L2hgdh protein_coding protein_coding MGP_AJ_T0009841.1 MGP_AJ_G0007963.1 mouse_genomes_project 12 107515914 107515984 + Mir127 miRNA miRNA MGP_AJ_T0009795.1 MGP_AJ_G0007917.1 mouse_genomes_project 12 56321840 56321910 - Gm27284 miRNA miRNA MGP_AJ_T0036029.1 MGP_AJ_G0020125.1 mouse_genomes_project 12 111033253 111093431 + MGP_AJ_P0036029 Pacs2 protein_coding protein_coding MGP_AJ_T0012864.1 MGP_AJ_G0010959.1 mouse_genomes_project 12 111434650 111435256 + processed_pseudogene processed_pseudogene MGP_AJ_T0035022.1 MGP_AJ_G0019793.1 mouse_genomes_project 12 70439008 70445714 - MGP_AJ_P0035022 Trmt5 protein_coding unknown_likely_coding MGP_AJ_T0035023.1 MGP_AJ_G0019793.1 mouse_genomes_project 12 70439409 70445692 - MGP_AJ_P0035023 Trmt5 protein_coding protein_coding MGP_AJ_T0035597.1 MGP_AJ_G0019968.1 mouse_genomes_project 12 97531299 97584041 + Tdp1 protein_coding retained_intron MGP_AJ_T0035598.1 MGP_AJ_G0019968.1 mouse_genomes_project 12 97531316 97534470 + Tdp1 protein_coding processed_transcript MGP_AJ_T0035599.1 MGP_AJ_G0019968.1 mouse_genomes_project 12 97531319 97601762 + MGP_AJ_P0035599 Tdp1 protein_coding protein_coding MGP_AJ_T0035600.1 MGP_AJ_G0019968.1 mouse_genomes_project 12 97533266 97537992 + MGP_AJ_P0035600 Tdp1 protein_coding protein_coding MGP_AJ_T0035601.1 MGP_AJ_G0019968.1 mouse_genomes_project 12 97537826 97601757 + MGP_AJ_P0035601 Tdp1 protein_coding protein_coding MGP_AJ_T0035602.1 MGP_AJ_G0019968.1 mouse_genomes_project 12 97558317 97559249 + Tdp1 protein_coding retained_intron MGP_AJ_T0035603.1 MGP_AJ_G0019968.1 mouse_genomes_project 12 97560675 97601762 + Tdp1 protein_coding retained_intron MGP_AJ_T0012850.1 MGP_AJ_G0010945.1 mouse_genomes_project 12 99275136 99275483 + processed_pseudogene processed_pseudogene MGP_AJ_T0034617.1 MGP_AJ_G0019646.1 mouse_genomes_project 12 31520545 31677483 - MGP_AJ_P0034617 Hdac9 protein_coding unknown_likely_coding MGP_AJ_T0034618.1 MGP_AJ_G0019646.1 mouse_genomes_project 12 31520558 31677586 - MGP_AJ_P0034618 Hdac9 protein_coding protein_coding MGP_AJ_T0006505.1 MGP_AJ_G0005402.1 mouse_genomes_project 12 110963445 110967611 - Gm26583 lincRNA lincRNA MGP_AJ_T0099388.1 MGP_AJ_G0037354.1 mouse_genomes_project 12 1885390 1885493 - Gm23167 snRNA snRNA MGP_AJ_T0098557.1 MGP_AJ_G0036541.1 mouse_genomes_project 12 42367246 42367330 + Gm22076 rRNA rRNA MGP_AJ_T0035291.1 MGP_AJ_G0019884.1 mouse_genomes_project 12 81577593 81588296 + MGP_AJ_P0035291 Acot6 protein_coding protein_coding MGP_AJ_T0100688.1 MGP_AJ_G0038654.1 mouse_genomes_project 12 107563782 107563855 + Gm24899 snoRNA snoRNA MGP_AJ_T0099399.1 MGP_AJ_G0037365.1 mouse_genomes_project 12 48766800 48766902 - Gm22663 snRNA snRNA MGP_AJ_T0034324.1 MGP_AJ_G0019542.1 mouse_genomes_project 12 1711035 1719456 - MGP_AJ_P0034324 Fkbp1b protein_coding protein_coding MGP_AJ_T0012814.1 MGP_AJ_G0010909.1 mouse_genomes_project 12 52473786 52474309 - processed_pseudogene processed_pseudogene MGP_AJ_T0035767.1 MGP_AJ_G0020030.1 mouse_genomes_project 12 102167248 102174850 + MGP_AJ_P0035767 Serpina3n protein_coding protein_coding MGP_AJ_T0012839.1 MGP_AJ_G0010934.1 mouse_genomes_project 12 81077196 81077962 - processed_pseudogene processed_pseudogene MGP_AJ_T0035526.1 MGP_AJ_G0019951.1 mouse_genomes_project 12 88406808 88420702 - MGP_AJ_P0035526 Dio2 protein_coding protein_coding MGP_AJ_T0006396.1 MGP_AJ_G0005331.1 mouse_genomes_project 12 18272149 18273830 + Gm4419 lincRNA lincRNA MGP_AJ_T0035770.1 MGP_AJ_G0020033.1 mouse_genomes_project 12 102453745 102520501 - MGP_AJ_P0035770 Dicer1 protein_coding unknown_likely_coding MGP_AJ_T0034554.1 MGP_AJ_G0019627.1 mouse_genomes_project 12 28505231 28567435 + MGP_AJ_P0034554 Slc26a3 protein_coding protein_coding MGP_AJ_T0034555.1 MGP_AJ_G0019627.1 mouse_genomes_project 12 28554715 28589798 + MGP_AJ_P0034555 Slc26a3 protein_coding nonsense_mediated_decay MGP_AJ_T0034556.1 MGP_AJ_G0019627.1 mouse_genomes_project 12 28554717 28590220 + MGP_AJ_P0034556 Slc26a3 protein_coding protein_coding MGP_AJ_T0034557.1 MGP_AJ_G0019627.1 mouse_genomes_project 12 28554717 28569319 + MGP_AJ_P0034557 Slc26a3 protein_coding nonsense_mediated_decay MGP_AJ_T0034558.1 MGP_AJ_G0019627.1 mouse_genomes_project 12 28554731 28569345 + Slc26a3 protein_coding retained_intron MGP_AJ_T0034559.1 MGP_AJ_G0019627.1 mouse_genomes_project 12 28563908 28571526 + Slc26a3 protein_coding retained_intron MGP_AJ_T0034560.1 MGP_AJ_G0019627.1 mouse_genomes_project 12 28587208 28588154 + MGP_AJ_P0034560 Slc26a3 protein_coding protein_coding MGP_AJ_T0036018.1 MGP_AJ_G0020117.1 mouse_genomes_project 12 110831582 110838320 + MGP_AJ_P0036018 BC022687 protein_coding protein_coding MGP_AJ_T0036019.1 MGP_AJ_G0020117.1 mouse_genomes_project 12 110831582 110838861 + MGP_AJ_P0036019 BC022687 protein_coding protein_coding MGP_AJ_T0012808.1 MGP_AJ_G0010903.1 mouse_genomes_project 12 46167479 46168490 + processed_pseudogene processed_pseudogene MGP_AJ_T0034973.1 MGP_AJ_G0019779.1 mouse_genomes_project 12 69211510 69224111 - MGP_AJ_P0034973 L3hypdh protein_coding protein_coding MGP_AJ_T0034974.1 MGP_AJ_G0019779.1 mouse_genomes_project 12 69214579 69224111 - L3hypdh protein_coding retained_intron MGP_AJ_T0034975.1 MGP_AJ_G0019779.1 mouse_genomes_project 12 69215347 69223690 - L3hypdh protein_coding processed_transcript MGP_AJ_T0012815.1 MGP_AJ_G0010910.1 mouse_genomes_project 12 53473774 53474005 - processed_pseudogene processed_pseudogene MGP_AJ_T0102268.1 MGP_AJ_G0040011.1 mouse_genomes_project 12 45939758 45943208 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0000093.1 MGP_AJ_G0000072.1 mouse_genomes_project 12 112554419 112554853 - MGP_AJ_P0000093 Ighv12-3 IG_V_gene IG_V_gene MGP_AJ_T0034989.1 MGP_AJ_G0019783.1 mouse_genomes_project 12 69580182 69650253 + MGP_AJ_P0034989 Lrrc9 protein_coding protein_coding MGP_AJ_T0034990.1 MGP_AJ_G0019783.1 mouse_genomes_project 12 69580249 69636925 + MGP_AJ_P0034990 Lrrc9 protein_coding protein_coding MGP_AJ_T0034991.1 MGP_AJ_G0019783.1 mouse_genomes_project 12 69580265 69606744 + Lrrc9 protein_coding retained_intron MGP_AJ_T0034992.1 MGP_AJ_G0019783.1 mouse_genomes_project 12 69580351 69654022 + Lrrc9 protein_coding processed_transcript MGP_AJ_T0034993.1 MGP_AJ_G0019783.1 mouse_genomes_project 12 69580558 69593613 + Lrrc9 protein_coding retained_intron MGP_AJ_T0034994.1 MGP_AJ_G0019783.1 mouse_genomes_project 12 69580565 69613442 + Lrrc9 protein_coding retained_intron MGP_AJ_T0034995.1 MGP_AJ_G0019783.1 mouse_genomes_project 12 69580691 69652071 + MGP_AJ_P0034995 Lrrc9 protein_coding unknown_likely_coding MGP_AJ_T0034996.1 MGP_AJ_G0019783.1 mouse_genomes_project 12 69615305 69616893 + Lrrc9 protein_coding retained_intron MGP_AJ_T0098559.1 MGP_AJ_G0036543.1 mouse_genomes_project 12 51712777 51712887 - Gm24971 rRNA rRNA MGP_AJ_T0000235.1 MGP_AJ_G0000179.1 mouse_genomes_project 12 111903512 111903828 - IG_V_pseudogene IG_V_pseudogene MGP_AJ_T0006393.1 MGP_AJ_G0005328.1 mouse_genomes_project 12 9698059 9704377 + Platr19 lincRNA lincRNA MGP_AJ_T0012821.1 MGP_AJ_G0010916.1 mouse_genomes_project 12 58477574 58478547 - processed_pseudogene processed_pseudogene MGP_AJ_T0034819.1 MGP_AJ_G0019728.1 mouse_genomes_project 12 56170303 56188487 + MGP_AJ_P0034819 Mia2 protein_coding protein_coding MGP_AJ_T0034820.1 MGP_AJ_G0019728.1 mouse_genomes_project 12 56170304 56198820 + MGP_AJ_P0034820 Mia2 protein_coding unknown_likely_coding MGP_AJ_T0034773.1 MGP_AJ_G0019708.1 mouse_genomes_project 12 52581831 52585065 - MGP_AJ_P0034773 Nfkbia protein_coding protein_coding MGP_AJ_T0034327.1 MGP_AJ_G0019544.1 mouse_genomes_project 12 1740770 1752668 - Mfsd2b protein_coding retained_intron MGP_AJ_T0034328.1 MGP_AJ_G0019544.1 mouse_genomes_project 12 1740770 1752671 - MGP_AJ_P0034328 Mfsd2b protein_coding nonsense_mediated_decay MGP_AJ_T0034329.1 MGP_AJ_G0019544.1 mouse_genomes_project 12 1741402 1752658 - Mfsd2b protein_coding retained_intron MGP_AJ_T0034330.1 MGP_AJ_G0019544.1 mouse_genomes_project 12 1741402 1752671 - MGP_AJ_P0034330 Mfsd2b protein_coding protein_coding MGP_AJ_T0034331.1 MGP_AJ_G0019544.1 mouse_genomes_project 12 1741402 1752671 - MGP_AJ_P0034331 Mfsd2b protein_coding protein_coding MGP_AJ_T0034332.1 MGP_AJ_G0019544.1 mouse_genomes_project 12 1741895 1752672 - Mfsd2b protein_coding retained_intron MGP_AJ_T0034333.1 MGP_AJ_G0019544.1 mouse_genomes_project 12 1745548 1747574 - Mfsd2b protein_coding retained_intron MGP_AJ_T0034334.1 MGP_AJ_G0019544.1 mouse_genomes_project 12 1747260 1752672 - MGP_AJ_P0034334 Mfsd2b protein_coding nonsense_mediated_decay MGP_AJ_T0006419.1 MGP_AJ_G0005347.1 mouse_genomes_project 12 67356868 67363230 + F730035M05Rik lincRNA lincRNA MGP_AJ_T0035096.1 MGP_AJ_G0019822.1 mouse_genomes_project 12 73960988 73979128 + MGP_AJ_P0035096 Churc1 protein_coding protein_coding MGP_AJ_T0035097.1 MGP_AJ_G0019822.1 mouse_genomes_project 12 73963876 73971292 + Churc1 protein_coding retained_intron MGP_AJ_T0034422.1 MGP_AJ_G0019581.1 mouse_genomes_project 12 13895026 13906398 - Pqlc3 protein_coding retained_intron MGP_AJ_T0034423.1 MGP_AJ_G0019581.1 mouse_genomes_project 12 13895026 13906484 - MGP_AJ_P0034423 Pqlc3 protein_coding protein_coding MGP_AJ_T0034424.1 MGP_AJ_G0019581.1 mouse_genomes_project 12 13899328 13906391 - MGP_AJ_P0034424 Pqlc3 protein_coding protein_coding MGP_AJ_T0034425.1 MGP_AJ_G0019581.1 mouse_genomes_project 12 13899877 13906392 - Pqlc3 protein_coding processed_transcript MGP_AJ_T0034426.1 MGP_AJ_G0019581.1 mouse_genomes_project 12 13900022 13906482 - MGP_AJ_P0034426 Pqlc3 protein_coding nonsense_mediated_decay MGP_AJ_T0034427.1 MGP_AJ_G0019581.1 mouse_genomes_project 12 13902009 13906774 - Pqlc3 protein_coding processed_transcript MGP_AJ_T0034428.1 MGP_AJ_G0019581.1 mouse_genomes_project 12 13902009 13906774 - Pqlc3 protein_coding processed_transcript MGP_AJ_T0009884.1 MGP_AJ_G0008006.1 mouse_genomes_project 12 107661500 107661582 + Mir453 miRNA miRNA MGP_AJ_T0000867.1 MGP_AJ_G0000802.1 mouse_genomes_project 12 101784096 101786589 - TEC TEC MGP_AJ_T0035475.1 MGP_AJ_G0019938.1 mouse_genomes_project 12 84716532 84750548 - MGP_AJ_P0035475 Tmed8 protein_coding protein_coding MGP_AJ_T0017299.1 MGP_AJ_G0015203.1 mouse_genomes_project 12 30486050 30522538 - Atxn7l1os2 processed_transcript processed_transcript MGP_AJ_T0034526.1 MGP_AJ_G0019617.1 mouse_genomes_project 12 27176775 27247437 - MGP_AJ_P0034526 Tpo protein_coding protein_coding MGP_AJ_T0034527.1 MGP_AJ_G0019617.1 mouse_genomes_project 12 27206926 27209788 - Tpo protein_coding retained_intron MGP_AJ_T0034528.1 MGP_AJ_G0019617.1 mouse_genomes_project 12 27231511 27246709 - MGP_AJ_P0034528 Tpo protein_coding protein_coding MGP_AJ_T0034701.1 MGP_AJ_G0019677.1 mouse_genomes_project 12 41854452 42076051 - MGP_AJ_P0034701 Stxbp6 protein_coding protein_coding MGP_AJ_T0034702.1 MGP_AJ_G0019677.1 mouse_genomes_project 12 41857186 42076432 - MGP_AJ_P0034702 Stxbp6 protein_coding protein_coding MGP_AJ_T0034703.1 MGP_AJ_G0019677.1 mouse_genomes_project 12 41863203 42015196 - Stxbp6 protein_coding processed_transcript MGP_AJ_T0034704.1 MGP_AJ_G0019677.1 mouse_genomes_project 12 41902176 42076093 - MGP_AJ_P0034704 Stxbp6 protein_coding protein_coding MGP_AJ_T0034705.1 MGP_AJ_G0019677.1 mouse_genomes_project 12 42015163 42076257 - MGP_AJ_P0034705 Stxbp6 protein_coding nonsense_mediated_decay MGP_AJ_T0035385.1 MGP_AJ_G0019912.1 mouse_genomes_project 12 82722095 82729243 + MGP_AJ_P0035385 Eif2b2 protein_coding protein_coding MGP_AJ_T0035386.1 MGP_AJ_G0019912.1 mouse_genomes_project 12 82722118 82725454 + MGP_AJ_P0035386 Eif2b2 protein_coding protein_coding MGP_AJ_T0035387.1 MGP_AJ_G0019912.1 mouse_genomes_project 12 82722127 82728765 + MGP_AJ_P0035387 Eif2b2 protein_coding protein_coding MGP_AJ_T0035388.1 MGP_AJ_G0019912.1 mouse_genomes_project 12 82722129 82722564 + Eif2b2 protein_coding retained_intron MGP_AJ_T0035389.1 MGP_AJ_G0019912.1 mouse_genomes_project 12 82722160 82725441 + Eif2b2 protein_coding retained_intron MGP_AJ_T0035390.1 MGP_AJ_G0019912.1 mouse_genomes_project 12 82722196 82726103 + Eif2b2 protein_coding retained_intron MGP_AJ_T0035391.1 MGP_AJ_G0019912.1 mouse_genomes_project 12 82727140 82729108 + Eif2b2 protein_coding retained_intron MGP_AJ_T0035329.1 MGP_AJ_G0019892.1 mouse_genomes_project 12 81857591 81889446 - MGP_AJ_P0035329 Entpd5 protein_coding protein_coding MGP_AJ_T0035330.1 MGP_AJ_G0019892.1 mouse_genomes_project 12 81857591 81889446 - MGP_AJ_P0035330 Entpd5 protein_coding protein_coding MGP_AJ_T0035331.1 MGP_AJ_G0019892.1 mouse_genomes_project 12 81857609 81893009 - MGP_AJ_P0035331 Entpd5 protein_coding protein_coding MGP_AJ_T0035332.1 MGP_AJ_G0019892.1 mouse_genomes_project 12 81857612 81892994 - MGP_AJ_P0035332 Entpd5 protein_coding protein_coding MGP_AJ_T0035333.1 MGP_AJ_G0019892.1 mouse_genomes_project 12 81860411 81884322 - MGP_AJ_P0035333 Entpd5 protein_coding protein_coding MGP_AJ_T0035334.1 MGP_AJ_G0019892.1 mouse_genomes_project 12 81860743 81884273 - MGP_AJ_P0035334 Entpd5 protein_coding protein_coding MGP_AJ_T0035335.1 MGP_AJ_G0019892.1 mouse_genomes_project 12 81864092 81868896 - Entpd5 protein_coding retained_intron MGP_AJ_T0035336.1 MGP_AJ_G0019892.1 mouse_genomes_project 12 81887658 81892964 - Entpd5 protein_coding processed_transcript MGP_AJ_T0035579.1 MGP_AJ_G0019964.1 mouse_genomes_project 12 96424000 96546329 - MGP_AJ_P0035579 Eml5 protein_coding protein_coding MGP_AJ_T0035580.1 MGP_AJ_G0019964.1 mouse_genomes_project 12 96438244 96545873 - MGP_AJ_P0035580 Eml5 protein_coding unknown_likely_coding MGP_AJ_T0035152.1 MGP_AJ_G0019844.1 mouse_genomes_project 12 77604040 77696991 - MGP_AJ_P0035152 Actn1 protein_coding unknown_likely_coding MGP_AJ_T0035153.1 MGP_AJ_G0019844.1 mouse_genomes_project 12 77604042 77697271 - MGP_AJ_P0035153 Actn1 protein_coding protein_coding MGP_AJ_T0035154.1 MGP_AJ_G0019844.1 mouse_genomes_project 12 77604822 77696991 - MGP_AJ_P0035154 Actn1 protein_coding protein_coding MGP_AJ_T0035038.1 MGP_AJ_G0019800.1 mouse_genomes_project 12 71176570 71454955 + MGP_AJ_P0035038 Syt16 protein_coding protein_coding MGP_AJ_T0035039.1 MGP_AJ_G0019800.1 mouse_genomes_project 12 71330759 71454951 + MGP_AJ_P0035039 Syt16 protein_coding unknown_likely_coding MGP_AJ_T0035485.1 MGP_AJ_G0019943.1 mouse_genomes_project 12 84829879 84851700 - MGP_AJ_P0035485 Ism2 protein_coding protein_coding MGP_AJ_T0035486.1 MGP_AJ_G0019943.1 mouse_genomes_project 12 84830923 84838413 - MGP_AJ_P0035486 Ism2 protein_coding protein_coding MGP_AJ_T0035487.1 MGP_AJ_G0019943.1 mouse_genomes_project 12 84833750 84838349 - Ism2 protein_coding processed_transcript MGP_AJ_T0035572.1 MGP_AJ_G0019962.1 mouse_genomes_project 12 96310460 96370564 - MGP_AJ_P0035572 Ptpn21 protein_coding protein_coding MGP_AJ_T0035573.1 MGP_AJ_G0019962.1 mouse_genomes_project 12 96310460 96373324 - MGP_AJ_P0035573 Ptpn21 protein_coding protein_coding MGP_AJ_T0035777.1 MGP_AJ_G0020039.1 mouse_genomes_project 12 102969101 103010189 + MGP_AJ_P0035777 Tcl1b2 protein_coding nonsense_mediated_decay MGP_AJ_T0035778.1 MGP_AJ_G0020039.1 mouse_genomes_project 12 102969115 103010191 + MGP_AJ_P0035778 Tcl1b2 protein_coding protein_coding MGP_AJ_T0009872.1 MGP_AJ_G0007994.1 mouse_genomes_project 12 107649653 107649721 + Mir376a miRNA miRNA MGP_AJ_T0006428.1 MGP_AJ_G0005352.1 mouse_genomes_project 12 77541207 77546034 + Gm26669 lincRNA lincRNA MGP_AJ_T0000063.1 MGP_AJ_G0000050.1 mouse_genomes_project 12 111931162 111931639 - MGP_AJ_P0000063 Ighv5-15 IG_V_gene IG_V_gene MGP_AJ_T0000064.1 MGP_AJ_G0000050.1 mouse_genomes_project 12 111931162 111931631 - MGP_AJ_P0000064 Ighv5-15 IG_V_gene IG_V_gene MGP_AJ_T0011321.1 MGP_AJ_G0009443.1 mouse_genomes_project 12 14566122 14566419 - Gm25925 misc_RNA misc_RNA MGP_AJ_T0009897.1 MGP_AJ_G0008019.1 mouse_genomes_project 12 110129419 110129504 + Mir3073a miRNA miRNA MGP_AJ_T0012849.1 MGP_AJ_G0010944.1 mouse_genomes_project 12 98839678 98840470 + processed_pseudogene processed_pseudogene MGP_AJ_T0035819.1 MGP_AJ_G0020053.1 mouse_genomes_project 12 105841020 105935251 - MGP_AJ_P0035819 Bcl11b protein_coding protein_coding MGP_AJ_T0035820.1 MGP_AJ_G0020053.1 mouse_genomes_project 12 105846856 105935063 - MGP_AJ_P0035820 Bcl11b protein_coding protein_coding MGP_AJ_T0035821.1 MGP_AJ_G0020053.1 mouse_genomes_project 12 105846856 105935063 - MGP_AJ_P0035821 Bcl11b protein_coding protein_coding MGP_AJ_T0012822.1 MGP_AJ_G0010917.1 mouse_genomes_project 12 58576374 58576902 + processed_pseudogene processed_pseudogene MGP_AJ_T0034447.1 MGP_AJ_G0019587.1 mouse_genomes_project 12 14458869 14467385 + MGP_AJ_P0034447 Odc1 protein_coding protein_coding MGP_AJ_T0034448.1 MGP_AJ_G0019587.1 mouse_genomes_project 12 14458958 14465622 + MGP_AJ_P0034448 Odc1 protein_coding unknown_likely_coding MGP_AJ_T0034540.1 MGP_AJ_G0019622.1 mouse_genomes_project 12 28024656 28074739 + Sh3yl1 protein_coding retained_intron MGP_AJ_T0034541.1 MGP_AJ_G0019622.1 mouse_genomes_project 12 28024656 28074883 + MGP_AJ_P0034541 Sh3yl1 protein_coding protein_coding MGP_AJ_T0034542.1 MGP_AJ_G0019622.1 mouse_genomes_project 12 28024680 28074872 + MGP_AJ_P0034542 Sh3yl1 protein_coding protein_coding MGP_AJ_T0034543.1 MGP_AJ_G0019622.1 mouse_genomes_project 12 28025175 28074877 + Sh3yl1 protein_coding processed_transcript MGP_AJ_T0035016.1 MGP_AJ_G0019791.1 mouse_genomes_project 12 70256581 70270596 - MGP_AJ_P0035016 Six4 protein_coding protein_coding MGP_AJ_T0035017.1 MGP_AJ_G0019791.1 mouse_genomes_project 12 70260547 70270627 - MGP_AJ_P0035017 Six4 protein_coding protein_coding MGP_AJ_T0009904.1 MGP_AJ_G0008026.1 mouse_genomes_project 12 112710870 112710930 - Mir7094-2 miRNA miRNA MGP_AJ_T0009803.1 MGP_AJ_G0007925.1 mouse_genomes_project 12 69615084 69615199 - Gm44392 miRNA miRNA MGP_AJ_T0009880.1 MGP_AJ_G0008002.1 mouse_genomes_project 12 107659652 107659728 + Mir382 miRNA miRNA MGP_AJ_T0000259.1 MGP_AJ_G0000203.1 mouse_genomes_project 12 113205814 113206248 - IG_V_pseudogene IG_V_pseudogene MGP_AJ_T0034479.1 MGP_AJ_G0019598.1 mouse_genomes_project 12 21737294 21753716 - MGP_AJ_P0034479 Cys1 protein_coding nonsense_mediated_decay MGP_AJ_T0034480.1 MGP_AJ_G0019598.1 mouse_genomes_project 12 21737304 21753698 - MGP_AJ_P0034480 Cys1 protein_coding protein_coding MGP_AJ_T0034481.1 MGP_AJ_G0019598.1 mouse_genomes_project 12 21737304 21753698 - MGP_AJ_P0034481 Cys1 protein_coding protein_coding MGP_AJ_T0034482.1 MGP_AJ_G0019598.1 mouse_genomes_project 12 21737409 21752801 - MGP_AJ_P0034482 Cys1 protein_coding nonsense_mediated_decay MGP_AJ_T0034483.1 MGP_AJ_G0019598.1 mouse_genomes_project 12 21737409 21752801 - MGP_AJ_P0034483 Cys1 protein_coding nonsense_mediated_decay MGP_AJ_T0034484.1 MGP_AJ_G0019598.1 mouse_genomes_project 12 21738010 21751715 - Cys1 protein_coding processed_transcript MGP_AJ_T0034485.1 MGP_AJ_G0019598.1 mouse_genomes_project 12 21738146 21752711 - MGP_AJ_P0034485 Cys1 protein_coding protein_coding MGP_AJ_T0034486.1 MGP_AJ_G0019598.1 mouse_genomes_project 12 21740038 21752497 - MGP_AJ_P0034486 Cys1 protein_coding protein_coding MGP_AJ_T0000859.1 MGP_AJ_G0000794.1 mouse_genomes_project 12 70109085 70109904 + TEC TEC MGP_AJ_T0100640.1 MGP_AJ_G0038606.1 mouse_genomes_project 12 8914458 8914587 + Gm25610 snoRNA snoRNA MGP_AJ_T0035043.1 MGP_AJ_G0019804.1 mouse_genomes_project 12 72503737 72585502 + MGP_AJ_P0035043 Rhoj protein_coding protein_coding MGP_AJ_T0035044.1 MGP_AJ_G0019804.1 mouse_genomes_project 12 72503737 72589002 + MGP_AJ_P0035044 Rhoj protein_coding protein_coding MGP_AJ_T0035045.1 MGP_AJ_G0019804.1 mouse_genomes_project 12 72503737 72583363 + MGP_AJ_P0035045 Rhoj protein_coding protein_coding MGP_AJ_T0035046.1 MGP_AJ_G0019804.1 mouse_genomes_project 12 72504088 72569327 + Rhoj protein_coding retained_intron MGP_AJ_T0035047.1 MGP_AJ_G0019804.1 mouse_genomes_project 12 72504296 72587758 + MGP_AJ_P0035047 Rhoj protein_coding nonsense_mediated_decay MGP_AJ_T0000024.1 MGP_AJ_G0000017.1 mouse_genomes_project 12 111467419 111467430 - MGP_AJ_P0000024 Ighd4-1 IG_D_gene IG_D_gene MGP_AJ_T0035099.1 MGP_AJ_G0019824.1 mouse_genomes_project 12 73994239 74018321 - MGP_AJ_P0035099 Rab15 protein_coding protein_coding MGP_AJ_T0035100.1 MGP_AJ_G0019824.1 mouse_genomes_project 12 73996158 73997119 - Rab15 protein_coding retained_intron MGP_AJ_T0035101.1 MGP_AJ_G0019824.1 mouse_genomes_project 12 73996406 74001766 - MGP_AJ_P0035101 Rab15 protein_coding protein_coding MGP_AJ_T0035102.1 MGP_AJ_G0019824.1 mouse_genomes_project 12 73996614 74018912 - MGP_AJ_P0035102 Rab15 protein_coding protein_coding MGP_AJ_T0035103.1 MGP_AJ_G0019824.1 mouse_genomes_project 12 73996850 74015062 - MGP_AJ_P0035103 Rab15 protein_coding protein_coding MGP_AJ_T0035104.1 MGP_AJ_G0019824.1 mouse_genomes_project 12 73999167 74018466 - Rab15 protein_coding retained_intron MGP_AJ_T0034840.1 MGP_AJ_G0019730.1 mouse_genomes_project 12 56280500 56303809 - MGP_AJ_P0034840 Fbxo33 protein_coding protein_coding MGP_AJ_T0034841.1 MGP_AJ_G0019730.1 mouse_genomes_project 12 56280502 56284283 - MGP_AJ_P0034841 Fbxo33 protein_coding protein_coding MGP_AJ_T0034842.1 MGP_AJ_G0019730.1 mouse_genomes_project 12 56280503 56285536 - Fbxo33 protein_coding retained_intron MGP_AJ_T0034843.1 MGP_AJ_G0019730.1 mouse_genomes_project 12 56284398 56302885 - MGP_AJ_P0034843 Fbxo33 protein_coding protein_coding MGP_AJ_T0017301.1 MGP_AJ_G0015205.1 mouse_genomes_project 12 68447272 68452794 - 4930474H06Rik processed_transcript processed_transcript MGP_AJ_T0098395.1 MGP_AJ_G0036379.1 mouse_genomes_project 12 81901310 81902694 + pseudogene pseudogene MGP_AJ_T0034818.1 MGP_AJ_G0019727.1 mouse_genomes_project 12 56144917 56152015 + MGP_AJ_P0034818 Pnn protein_coding protein_coding MGP_AJ_T0000038.1 MGP_AJ_G0000030.1 mouse_genomes_project 12 111465403 111465457 - MGP_AJ_P0000038 Ighj4 IG_J_gene IG_J_gene MGP_AJ_T0035587.1 MGP_AJ_G0019966.1 mouse_genomes_project 12 96829884 97034202 - MGP_AJ_P0035587 Foxn3 protein_coding protein_coding MGP_AJ_T0035588.1 MGP_AJ_G0019966.1 mouse_genomes_project 12 96829998 97033477 - MGP_AJ_P0035588 Foxn3 protein_coding protein_coding MGP_AJ_T0035589.1 MGP_AJ_G0019966.1 mouse_genomes_project 12 96829998 97091557 - MGP_AJ_P0035589 Foxn3 protein_coding protein_coding MGP_AJ_T0035590.1 MGP_AJ_G0019966.1 mouse_genomes_project 12 96831691 96926870 - MGP_AJ_P0035590 Foxn3 protein_coding protein_coding MGP_AJ_T0035591.1 MGP_AJ_G0019966.1 mouse_genomes_project 12 96844409 96926869 - MGP_AJ_P0035591 Foxn3 protein_coding protein_coding MGP_AJ_T0035592.1 MGP_AJ_G0019966.1 mouse_genomes_project 12 96926855 96993508 - Foxn3 protein_coding processed_transcript MGP_AJ_T0035593.1 MGP_AJ_G0019966.1 mouse_genomes_project 12 96977072 97053836 - MGP_AJ_P0035593 Foxn3 protein_coding protein_coding MGP_AJ_T0035594.1 MGP_AJ_G0019966.1 mouse_genomes_project 12 97027795 97091580 - Foxn3 protein_coding retained_intron MGP_AJ_T0035595.1 MGP_AJ_G0019966.1 mouse_genomes_project 12 97028829 97091594 - MGP_AJ_P0035595 Foxn3 protein_coding protein_coding MGP_AJ_T0034851.1 MGP_AJ_G0019734.1 mouse_genomes_project 12 62019931 62025593 + MGP_AJ_P0034851 Gm527 protein_coding unknown_likely_coding MGP_AJ_T0099393.1 MGP_AJ_G0037359.1 mouse_genomes_project 12 11443781 11443888 + Gm25414 snRNA snRNA MGP_AJ_T0035773.1 MGP_AJ_G0020035.1 mouse_genomes_project 12 102635551 102642329 + MGP_AJ_P0035773 4930408O17Rik protein_coding protein_coding MGP_AJ_T0012830.1 MGP_AJ_G0010925.1 mouse_genomes_project 12 73359575 73359867 - processed_pseudogene processed_pseudogene MGP_AJ_T0012863.1 MGP_AJ_G0010958.1 mouse_genomes_project 12 111434192 111434646 - processed_pseudogene processed_pseudogene MGP_AJ_T0035850.1 MGP_AJ_G0020064.1 mouse_genomes_project 12 106788680 106794375 + MGP_AJ_P0035850 Slc25a47 protein_coding protein_coding MGP_AJ_T0009892.1 MGP_AJ_G0008014.1 mouse_genomes_project 12 107669296 107669375 + Mir369 miRNA miRNA MGP_AJ_T0009873.1 MGP_AJ_G0007995.1 mouse_genomes_project 12 107650185 107650264 + Mir300 miRNA miRNA MGP_AJ_T0000246.1 MGP_AJ_G0000190.1 mouse_genomes_project 12 112511135 112511426 - IG_V_pseudogene IG_V_pseudogene MGP_AJ_T0006437.1 MGP_AJ_G0005361.1 mouse_genomes_project 12 83685187 83711096 + Gm805 lincRNA lincRNA MGP_AJ_T0000032.1 MGP_AJ_G0000024.1 mouse_genomes_project 12 111583039 111583056 - MGP_AJ_P0000032 IG_D_gene IG_D_gene MGP_AJ_T0035409.1 MGP_AJ_G0019921.1 mouse_genomes_project 12 83256260 83325323 + MGP_AJ_P0035409 Mfsd7c protein_coding protein_coding MGP_AJ_T0000262.1 MGP_AJ_G0000206.1 mouse_genomes_project 12 113913501 113913944 - IG_V_pseudogene IG_V_pseudogene MGP_AJ_T0012833.1 MGP_AJ_G0010928.1 mouse_genomes_project 12 76588020 76588448 - processed_pseudogene processed_pseudogene MGP_AJ_T0034496.1 MGP_AJ_G0019603.1 mouse_genomes_project 12 23401109 23518910 - MGP_AJ_P0034496 Rnf144a protein_coding protein_coding MGP_AJ_T0034497.1 MGP_AJ_G0019603.1 mouse_genomes_project 12 23401109 23518910 - MGP_AJ_P0034497 Rnf144a protein_coding protein_coding MGP_AJ_T0034325.1 MGP_AJ_G0019543.1 mouse_genomes_project 12 1721163 1730765 + MGP_AJ_P0034325 BC068281 protein_coding protein_coding MGP_AJ_T0034326.1 MGP_AJ_G0019543.1 mouse_genomes_project 12 1727997 1734711 + MGP_AJ_P0034326 BC068281 protein_coding protein_coding MGP_AJ_T0012811.1 MGP_AJ_G0010906.1 mouse_genomes_project 12 48771079 48771390 - processed_pseudogene processed_pseudogene MGP_AJ_T0035216.1 MGP_AJ_G0019867.1 mouse_genomes_project 12 79932247 79933366 - MGP_AJ_P0035216 Gm5435 protein_coding protein_coding MGP_AJ_T0035384.1 MGP_AJ_G0019911.1 mouse_genomes_project 12 82669472 82679909 - MGP_AJ_P0035384 Pgf protein_coding protein_coding MGP_AJ_T0012853.1 MGP_AJ_G0010948.1 mouse_genomes_project 12 101289496 101290160 - processed_pseudogene processed_pseudogene MGP_AJ_T0098571.1 MGP_AJ_G0036555.1 mouse_genomes_project 12 118425718 118425836 - Gm25675 rRNA rRNA MGP_AJ_T0035694.1 MGP_AJ_G0020000.1 mouse_genomes_project 12 100836283 100842260 - Prima1 protein_coding processed_transcript MGP_AJ_T0035695.1 MGP_AJ_G0020000.1 mouse_genomes_project 12 100836283 100881519 - MGP_AJ_P0035695 Prima1 protein_coding protein_coding MGP_AJ_T0035696.1 MGP_AJ_G0020000.1 mouse_genomes_project 12 100836283 100881515 - MGP_AJ_P0035696 Prima1 protein_coding nonsense_mediated_decay MGP_AJ_T0035697.1 MGP_AJ_G0020000.1 mouse_genomes_project 12 100836643 100881497 - MGP_AJ_P0035697 Prima1 protein_coding nonsense_mediated_decay MGP_AJ_T0035698.1 MGP_AJ_G0020000.1 mouse_genomes_project 12 100875007 100875393 - Prima1 protein_coding processed_transcript MGP_AJ_T0009889.1 MGP_AJ_G0008011.1 mouse_genomes_project 12 107669036 107669115 + Mir409 miRNA miRNA MGP_AJ_T0100700.1 MGP_AJ_G0038666.1 mouse_genomes_project 12 107604574 107604643 + AF357428 snoRNA snoRNA MGP_AJ_T0035544.1 MGP_AJ_G0019955.1 mouse_genomes_project 12 89272734 89423101 - MGP_AJ_P0035544 Ston2 protein_coding protein_coding MGP_AJ_T0035545.1 MGP_AJ_G0019955.1 mouse_genomes_project 12 89275685 89380338 - MGP_AJ_P0035545 Ston2 protein_coding protein_coding MGP_AJ_T0035546.1 MGP_AJ_G0019955.1 mouse_genomes_project 12 89338445 89349016 - Ston2 protein_coding processed_transcript MGP_AJ_T0035547.1 MGP_AJ_G0019955.1 mouse_genomes_project 12 89349123 89415791 - MGP_AJ_P0035547 Ston2 protein_coding protein_coding MGP_AJ_T0035548.1 MGP_AJ_G0019955.1 mouse_genomes_project 12 89371572 89407901 - Ston2 protein_coding processed_transcript MGP_AJ_T0035549.1 MGP_AJ_G0019955.1 mouse_genomes_project 12 89380100 89382570 - MGP_AJ_P0035549 Ston2 protein_coding protein_coding MGP_AJ_T0035550.1 MGP_AJ_G0019955.1 mouse_genomes_project 12 89422465 89425052 - Ston2 protein_coding processed_transcript MGP_AJ_T0034250.1 MGP_AJ_G0019525.1 mouse_genomes_project 12 441472 654793 + MGP_AJ_P0034250 Dtnb protein_coding protein_coding MGP_AJ_T0034251.1 MGP_AJ_G0019525.1 mouse_genomes_project 12 441482 653716 + MGP_AJ_P0034251 Dtnb protein_coding protein_coding MGP_AJ_T0034252.1 MGP_AJ_G0019525.1 mouse_genomes_project 12 441508 653677 + MGP_AJ_P0034252 Dtnb protein_coding nonsense_mediated_decay MGP_AJ_T0034253.1 MGP_AJ_G0019525.1 mouse_genomes_project 12 441524 653716 + MGP_AJ_P0034253 Dtnb protein_coding nonsense_mediated_decay MGP_AJ_T0034254.1 MGP_AJ_G0019525.1 mouse_genomes_project 12 441525 522097 + MGP_AJ_P0034254 Dtnb protein_coding protein_coding MGP_AJ_T0034255.1 MGP_AJ_G0019525.1 mouse_genomes_project 12 441526 592675 + Dtnb protein_coding retained_intron MGP_AJ_T0034256.1 MGP_AJ_G0019525.1 mouse_genomes_project 12 441544 653713 + MGP_AJ_P0034256 Dtnb protein_coding protein_coding MGP_AJ_T0034257.1 MGP_AJ_G0019525.1 mouse_genomes_project 12 441554 653460 + MGP_AJ_P0034257 Dtnb protein_coding nonsense_mediated_decay MGP_AJ_T0034258.1 MGP_AJ_G0019525.1 mouse_genomes_project 12 441556 653711 + MGP_AJ_P0034258 Dtnb protein_coding nonsense_mediated_decay MGP_AJ_T0034259.1 MGP_AJ_G0019525.1 mouse_genomes_project 12 441557 534165 + Dtnb protein_coding processed_transcript MGP_AJ_T0034260.1 MGP_AJ_G0019525.1 mouse_genomes_project 12 441561 653713 + MGP_AJ_P0034260 Dtnb protein_coding protein_coding MGP_AJ_T0034261.1 MGP_AJ_G0019525.1 mouse_genomes_project 12 441566 653713 + MGP_AJ_P0034261 Dtnb protein_coding protein_coding MGP_AJ_T0034262.1 MGP_AJ_G0019525.1 mouse_genomes_project 12 441614 653823 + MGP_AJ_P0034262 Dtnb protein_coding nonsense_mediated_decay MGP_AJ_T0034263.1 MGP_AJ_G0019525.1 mouse_genomes_project 12 441627 465585 + MGP_AJ_P0034263 Dtnb protein_coding protein_coding MGP_AJ_T0034264.1 MGP_AJ_G0019525.1 mouse_genomes_project 12 441711 624516 + MGP_AJ_P0034264 Dtnb protein_coding nonsense_mediated_decay MGP_AJ_T0034265.1 MGP_AJ_G0019525.1 mouse_genomes_project 12 442075 653709 + MGP_AJ_P0034265 Dtnb protein_coding protein_coding MGP_AJ_T0034266.1 MGP_AJ_G0019525.1 mouse_genomes_project 12 458236 653713 + MGP_AJ_P0034266 Dtnb protein_coding protein_coding MGP_AJ_T0034267.1 MGP_AJ_G0019525.1 mouse_genomes_project 12 504122 653713 + MGP_AJ_P0034267 Dtnb protein_coding protein_coding MGP_AJ_T0034268.1 MGP_AJ_G0019525.1 mouse_genomes_project 12 558191 590554 + Dtnb protein_coding retained_intron MGP_AJ_T0034269.1 MGP_AJ_G0019525.1 mouse_genomes_project 12 591125 622087 + Dtnb protein_coding processed_transcript MGP_AJ_T0034270.1 MGP_AJ_G0019525.1 mouse_genomes_project 12 621901 653460 + Dtnb protein_coding retained_intron MGP_AJ_T0034271.1 MGP_AJ_G0019525.1 mouse_genomes_project 12 622155 653716 + MGP_AJ_P0034271 Dtnb protein_coding protein_coding MGP_AJ_T0034272.1 MGP_AJ_G0019525.1 mouse_genomes_project 12 646642 653716 + Dtnb protein_coding processed_transcript MGP_AJ_T0034273.1 MGP_AJ_G0019525.1 mouse_genomes_project 12 646852 653715 + Dtnb protein_coding retained_intron MGP_AJ_T0034274.1 MGP_AJ_G0019525.1 mouse_genomes_project 12 651875 653716 + Dtnb protein_coding retained_intron MGP_AJ_T0034612.1 MGP_AJ_G0019642.1 mouse_genomes_project 12 30522631 30529101 + MGP_AJ_P0034612 Efcab10 protein_coding protein_coding MGP_AJ_T0003421.1 MGP_AJ_G0003137.1 mouse_genomes_project 12 100978046 100988952 + Gm15523 antisense antisense MGP_AJ_T0009822.1 MGP_AJ_G0007944.1 mouse_genomes_project 12 100625751 100625886 + Gm44324 miRNA miRNA MGP_AJ_T0034243.1 MGP_AJ_G0019524.1 mouse_genomes_project 12 294159 375906 + MGP_AJ_P0034243 Asxl2 protein_coding protein_coding MGP_AJ_T0034244.1 MGP_AJ_G0019524.1 mouse_genomes_project 12 294159 375911 + MGP_AJ_P0034244 Asxl2 protein_coding protein_coding MGP_AJ_T0034245.1 MGP_AJ_G0019524.1 mouse_genomes_project 12 294186 365246 + MGP_AJ_P0034245 Asxl2 protein_coding protein_coding MGP_AJ_T0034246.1 MGP_AJ_G0019524.1 mouse_genomes_project 12 294203 371525 + MGP_AJ_P0034246 Asxl2 protein_coding protein_coding MGP_AJ_T0034247.1 MGP_AJ_G0019524.1 mouse_genomes_project 12 294214 323597 + Asxl2 protein_coding retained_intron MGP_AJ_T0034248.1 MGP_AJ_G0019524.1 mouse_genomes_project 12 312193 365371 + MGP_AJ_P0034248 Asxl2 protein_coding nonsense_mediated_decay MGP_AJ_T0034249.1 MGP_AJ_G0019524.1 mouse_genomes_project 12 362722 373807 + Asxl2 protein_coding processed_transcript MGP_AJ_T0009890.1 MGP_AJ_G0008012.1 mouse_genomes_project 12 107669036 107669116 - Gm24321 miRNA miRNA MGP_AJ_T0034433.1 MGP_AJ_G0019584.1 mouse_genomes_project 12 14173400 14188624 + Pdia6 protein_coding retained_intron MGP_AJ_T0034434.1 MGP_AJ_G0019584.1 mouse_genomes_project 12 14173400 14191603 + MGP_AJ_P0034434 Pdia6 protein_coding protein_coding MGP_AJ_T0034435.1 MGP_AJ_G0019584.1 mouse_genomes_project 12 14173463 14181044 + Pdia6 protein_coding processed_transcript MGP_AJ_T0034436.1 MGP_AJ_G0019584.1 mouse_genomes_project 12 14180693 14184469 + Pdia6 protein_coding retained_intron MGP_AJ_T0034437.1 MGP_AJ_G0019584.1 mouse_genomes_project 12 14184057 14185760 + Pdia6 protein_coding processed_transcript MGP_AJ_T0100707.1 MGP_AJ_G0038673.1 mouse_genomes_project 12 107612782 107612853 + Gm22205 snoRNA snoRNA MGP_AJ_T0035379.1 MGP_AJ_G0019908.1 mouse_genomes_project 12 82589726 82600432 - MGP_AJ_P0035379 Prox2 protein_coding protein_coding MGP_AJ_T0035380.1 MGP_AJ_G0019908.1 mouse_genomes_project 12 82590155 82609782 - MGP_AJ_P0035380 Prox2 protein_coding protein_coding MGP_AJ_T0035381.1 MGP_AJ_G0019908.1 mouse_genomes_project 12 82597373 82598966 - Prox2 protein_coding retained_intron MGP_AJ_T0009787.1 MGP_AJ_G0007909.1 mouse_genomes_project 12 30184710 30184867 + Gm22904 miRNA miRNA MGP_AJ_T0035979.1 MGP_AJ_G0020103.1 mouse_genomes_project 12 110010367 110012572 - MGP_AJ_P0035979 Rd3l protein_coding protein_coding MGP_AJ_T0035980.1 MGP_AJ_G0020103.1 mouse_genomes_project 12 110010368 110011401 - MGP_AJ_P0035980 Rd3l protein_coding protein_coding MGP_AJ_T0035981.1 MGP_AJ_G0020103.1 mouse_genomes_project 12 110010401 110012310 - MGP_AJ_P0035981 Rd3l protein_coding protein_coding MGP_AJ_T0035982.1 MGP_AJ_G0020103.1 mouse_genomes_project 12 110010445 110011728 - MGP_AJ_P0035982 Rd3l protein_coding protein_coding MGP_AJ_T0035983.1 MGP_AJ_G0020103.1 mouse_genomes_project 12 110010447 110012357 - MGP_AJ_P0035983 Rd3l protein_coding protein_coding MGP_AJ_T0000258.1 MGP_AJ_G0000202.1 mouse_genomes_project 12 113097132 113097566 - IG_V_pseudogene IG_V_pseudogene MGP_AJ_T0035484.1 MGP_AJ_G0019942.1 mouse_genomes_project 12 84817571 84824824 + MGP_AJ_P0035484 Ahsa1 protein_coding protein_coding MGP_AJ_T0035318.1 MGP_AJ_G0019891.1 mouse_genomes_project 12 81845339 81857527 + MGP_AJ_P0035318 Coq6 protein_coding protein_coding MGP_AJ_T0035319.1 MGP_AJ_G0019891.1 mouse_genomes_project 12 81845650 81857531 + MGP_AJ_P0035319 Coq6 protein_coding protein_coding MGP_AJ_T0035320.1 MGP_AJ_G0019891.1 mouse_genomes_project 12 81845678 81857531 + Coq6 protein_coding retained_intron MGP_AJ_T0035321.1 MGP_AJ_G0019891.1 mouse_genomes_project 12 81845712 81857527 + MGP_AJ_P0035321 Coq6 protein_coding nonsense_mediated_decay MGP_AJ_T0035322.1 MGP_AJ_G0019891.1 mouse_genomes_project 12 81845721 81857527 + MGP_AJ_P0035322 Coq6 protein_coding protein_coding MGP_AJ_T0035323.1 MGP_AJ_G0019891.1 mouse_genomes_project 12 81845723 81850839 + Coq6 protein_coding processed_transcript MGP_AJ_T0035324.1 MGP_AJ_G0019891.1 mouse_genomes_project 12 81845725 81857523 + Coq6 protein_coding retained_intron MGP_AJ_T0035325.1 MGP_AJ_G0019891.1 mouse_genomes_project 12 81845746 81854766 + MGP_AJ_P0035325 Coq6 protein_coding protein_coding MGP_AJ_T0035326.1 MGP_AJ_G0019891.1 mouse_genomes_project 12 81852160 81855978 + Coq6 protein_coding processed_transcript MGP_AJ_T0035327.1 MGP_AJ_G0019891.1 mouse_genomes_project 12 81852160 81857527 + Coq6 protein_coding processed_transcript MGP_AJ_T0035328.1 MGP_AJ_G0019891.1 mouse_genomes_project 12 81854736 81855900 + Coq6 protein_coding retained_intron MGP_AJ_T0034506.1 MGP_AJ_G0019608.1 mouse_genomes_project 12 25676541 25705260 - MGP_AJ_P0034506 Allc protein_coding protein_coding MGP_AJ_T0034507.1 MGP_AJ_G0019608.1 mouse_genomes_project 12 25676541 25705268 - MGP_AJ_P0034507 Allc protein_coding protein_coding MGP_AJ_T0009848.1 MGP_AJ_G0007970.1 mouse_genomes_project 12 107540981 107541068 + Gm23912 miRNA miRNA MGP_AJ_T0035512.1 MGP_AJ_G0019950.1 mouse_genomes_project 12 86364155 86916288 + Nrxn3 protein_coding retained_intron MGP_AJ_T0035513.1 MGP_AJ_G0019950.1 mouse_genomes_project 12 86364167 86494628 + Nrxn3 protein_coding retained_intron MGP_AJ_T0035514.1 MGP_AJ_G0019950.1 mouse_genomes_project 12 86364265 88012189 + MGP_AJ_P0035514 Nrxn3 protein_coding nonsense_mediated_decay MGP_AJ_T0035515.1 MGP_AJ_G0019950.1 mouse_genomes_project 12 86364388 88012208 + MGP_AJ_P0035515 Nrxn3 protein_coding nonsense_mediated_decay MGP_AJ_T0035516.1 MGP_AJ_G0019950.1 mouse_genomes_project 12 86366362 86437600 + Nrxn3 protein_coding processed_transcript MGP_AJ_T0035517.1 MGP_AJ_G0019950.1 mouse_genomes_project 12 86367034 86437466 + Nrxn3 protein_coding processed_transcript MGP_AJ_T0035518.1 MGP_AJ_G0019950.1 mouse_genomes_project 12 86436331 86497221 + MGP_AJ_P0035518 Nrxn3 protein_coding unknown_likely_coding MGP_AJ_T0035519.1 MGP_AJ_G0019950.1 mouse_genomes_project 12 86436988 88014246 + MGP_AJ_P0035519 Nrxn3 protein_coding protein_coding MGP_AJ_T0035520.1 MGP_AJ_G0019950.1 mouse_genomes_project 12 86437923 86497344 + Nrxn3 protein_coding processed_transcript MGP_AJ_T0035521.1 MGP_AJ_G0019950.1 mouse_genomes_project 12 86595786 86838038 + Nrxn3 protein_coding processed_transcript MGP_AJ_T0035522.1 MGP_AJ_G0019950.1 mouse_genomes_project 12 86595795 88012371 + MGP_AJ_P0035522 Nrxn3 protein_coding protein_coding MGP_AJ_T0035523.1 MGP_AJ_G0019950.1 mouse_genomes_project 12 86843824 88011721 + MGP_AJ_P0035523 Nrxn3 protein_coding protein_coding MGP_AJ_T0035524.1 MGP_AJ_G0019950.1 mouse_genomes_project 12 87480542 88012754 + MGP_AJ_P0035524 Nrxn3 protein_coding protein_coding MGP_AJ_T0035525.1 MGP_AJ_G0019950.1 mouse_genomes_project 12 87480542 88012210 + MGP_AJ_P0035525 Nrxn3 protein_coding protein_coding MGP_AJ_T0034241.1 MGP_AJ_G0019522.1 mouse_genomes_project 12 114350 178310 - MGP_AJ_P0034241 Rab10 protein_coding protein_coding MGP_AJ_T0009903.1 MGP_AJ_G0008025.1 mouse_genomes_project 12 111082475 111082575 - Gm44471 miRNA miRNA MGP_AJ_T0034708.1 MGP_AJ_G0019680.1 mouse_genomes_project 12 46402738 46404404 + Foxg1 protein_coding processed_transcript MGP_AJ_T0034709.1 MGP_AJ_G0019680.1 mouse_genomes_project 12 46402878 46403679 + Foxg1 protein_coding processed_transcript MGP_AJ_T0034710.1 MGP_AJ_G0019680.1 mouse_genomes_project 12 46402961 46406895 + MGP_AJ_P0034710 Foxg1 protein_coding protein_coding MGP_AJ_T0034711.1 MGP_AJ_G0019680.1 mouse_genomes_project 12 46403085 46406901 + MGP_AJ_P0034711 Foxg1 protein_coding protein_coding MGP_AJ_T0034901.1 MGP_AJ_G0019756.1 mouse_genomes_project 12 66696941 66700304 - Sos2 protein_coding retained_intron MGP_AJ_T0034902.1 MGP_AJ_G0019756.1 mouse_genomes_project 12 66696945 66795673 - MGP_AJ_P0034902 Sos2 protein_coding protein_coding MGP_AJ_T0034903.1 MGP_AJ_G0019756.1 mouse_genomes_project 12 66698034 66795662 - MGP_AJ_P0034903 Sos2 protein_coding protein_coding MGP_AJ_T0034904.1 MGP_AJ_G0019756.1 mouse_genomes_project 12 66698270 66795448 - MGP_AJ_P0034904 Sos2 protein_coding protein_coding MGP_AJ_T0034905.1 MGP_AJ_G0019756.1 mouse_genomes_project 12 66698556 66701986 - Sos2 protein_coding retained_intron MGP_AJ_T0034906.1 MGP_AJ_G0019756.1 mouse_genomes_project 12 66707533 66710718 - Sos2 protein_coding retained_intron MGP_AJ_T0034907.1 MGP_AJ_G0019756.1 mouse_genomes_project 12 66728960 66731633 - Sos2 protein_coding retained_intron MGP_AJ_T0000257.1 MGP_AJ_G0000201.1 mouse_genomes_project 12 113097132 113108399 - IG_V_pseudogene IG_V_pseudogene MGP_AJ_T0035476.1 MGP_AJ_G0019939.1 mouse_genomes_project 12 84750041 84759435 + Samd15 protein_coding retained_intron MGP_AJ_T0035477.1 MGP_AJ_G0019939.1 mouse_genomes_project 12 84750085 84759113 + Samd15 protein_coding processed_transcript MGP_AJ_T0035478.1 MGP_AJ_G0019939.1 mouse_genomes_project 12 84750870 84763796 + MGP_AJ_P0035478 Samd15 protein_coding protein_coding MGP_AJ_T0035479.1 MGP_AJ_G0019939.1 mouse_genomes_project 12 84751077 84752271 + MGP_AJ_P0035479 Samd15 protein_coding protein_coding MGP_AJ_T0009891.1 MGP_AJ_G0008013.1 mouse_genomes_project 12 107669167 107669247 + Mir412 miRNA miRNA MGP_AJ_T0035438.1 MGP_AJ_G0019927.1 mouse_genomes_project 12 83879681 84049677 + MGP_AJ_P0035438 Esrrb protein_coding protein_coding MGP_AJ_T0035439.1 MGP_AJ_G0019927.1 mouse_genomes_project 12 83941423 84049674 + MGP_AJ_P0035439 Esrrb protein_coding protein_coding MGP_AJ_T0035440.1 MGP_AJ_G0019927.1 mouse_genomes_project 12 83941423 84043571 + MGP_AJ_P0035440 Esrrb protein_coding protein_coding MGP_AJ_T0035441.1 MGP_AJ_G0019927.1 mouse_genomes_project 12 83941662 84047849 + MGP_AJ_P0035441 Esrrb protein_coding protein_coding MGP_AJ_T0035442.1 MGP_AJ_G0019927.1 mouse_genomes_project 12 83990332 84047114 + MGP_AJ_P0035442 Esrrb protein_coding protein_coding MGP_AJ_T0035443.1 MGP_AJ_G0019927.1 mouse_genomes_project 12 84024236 84029795 + Esrrb protein_coding processed_transcript MGP_AJ_T0099426.1 MGP_AJ_G0037392.1 mouse_genomes_project 12 78359054 78359161 + Gm23298 snRNA snRNA MGP_AJ_T0034714.1 MGP_AJ_G0019683.1 mouse_genomes_project 12 47368816 47669049 - MGP_AJ_P0034714 Prkd1 protein_coding unknown_likely_coding MGP_AJ_T0034715.1 MGP_AJ_G0019683.1 mouse_genomes_project 12 47368825 47669299 - MGP_AJ_P0034715 Prkd1 protein_coding protein_coding MGP_AJ_T0034972.1 MGP_AJ_G0019778.1 mouse_genomes_project 12 69207700 69209074 - MGP_AJ_P0034972 Gpr135 protein_coding protein_coding MGP_AJ_T0006408.1 MGP_AJ_G0005339.1 mouse_genomes_project 12 30238027 30266203 + Gm16267 lincRNA lincRNA MGP_AJ_T0034946.1 MGP_AJ_G0019769.1 mouse_genomes_project 12 67959437 68036506 + MGP_AJ_P0034946 Frmd6 protein_coding protein_coding MGP_AJ_T0034947.1 MGP_AJ_G0019769.1 mouse_genomes_project 12 67994015 68036312 + MGP_AJ_P0034947 Frmd6 protein_coding unknown_likely_coding MGP_AJ_T0034630.1 MGP_AJ_G0019653.1 mouse_genomes_project 12 33162415 33196956 - MGP_AJ_P0034630 Tspan13 protein_coding protein_coding MGP_AJ_T0034631.1 MGP_AJ_G0019653.1 mouse_genomes_project 12 33169518 33196967 - MGP_AJ_P0034631 Tspan13 protein_coding nonsense_mediated_decay MGP_AJ_T0034632.1 MGP_AJ_G0019653.1 mouse_genomes_project 12 33169529 33194396 - MGP_AJ_P0034632 Tspan13 protein_coding protein_coding MGP_AJ_T0035676.1 MGP_AJ_G0019993.1 mouse_genomes_project 12 100381734 100383166 - MGP_AJ_P0035676 Moap1 protein_coding protein_coding MGP_AJ_T0035677.1 MGP_AJ_G0019993.1 mouse_genomes_project 12 100381734 100383150 - MGP_AJ_P0035677 Moap1 protein_coding protein_coding MGP_AJ_T0000097.1 MGP_AJ_G0000075.1 mouse_genomes_project 12 112608101 112608559 - MGP_AJ_P0000097 Ighv6-5 IG_V_gene IG_V_gene MGP_AJ_T0000098.1 MGP_AJ_G0000075.1 mouse_genomes_project 12 112608104 112608401 - MGP_AJ_P0000098 Ighv6-5 IG_V_gene IG_V_gene MGP_AJ_T0006477.1 MGP_AJ_G0005392.1 mouse_genomes_project 12 107466308 107467061 + lincRNA lincRNA MGP_AJ_T0034371.1 MGP_AJ_G0019557.1 mouse_genomes_project 12 5860205 5883525 + MGP_AJ_P0034371 Matn3 protein_coding protein_coding MGP_AJ_T0000247.1 MGP_AJ_G0000191.1 mouse_genomes_project 12 112534847 112535138 - IG_V_pseudogene IG_V_pseudogene MGP_AJ_T0036095.1 MGP_AJ_G0020145.1 mouse_genomes_project 12 117339407 117431364 - MGP_AJ_P0036095 Abcb5 protein_coding protein_coding MGP_AJ_T0036096.1 MGP_AJ_G0020145.1 mouse_genomes_project 12 117357501 117362100 - Abcb5 protein_coding retained_intron MGP_AJ_T0036097.1 MGP_AJ_G0020145.1 mouse_genomes_project 12 117357974 117393738 - Abcb5 protein_coding processed_transcript MGP_AJ_T0035907.1 MGP_AJ_G0020079.1 mouse_genomes_project 12 108865811 108885569 - MGP_AJ_P0035907 Cinp protein_coding protein_coding MGP_AJ_T0035289.1 MGP_AJ_G0019883.1 mouse_genomes_project 12 81536359 81543055 + MGP_AJ_P0035289 Acot5 protein_coding protein_coding MGP_AJ_T0035290.1 MGP_AJ_G0019883.1 mouse_genomes_project 12 81536359 81543054 + MGP_AJ_P0035290 Acot5 protein_coding protein_coding MGP_AJ_T0035410.1 MGP_AJ_G0019922.1 mouse_genomes_project 12 83327708 83336783 - MGP_AJ_P0035410 0610007P14Rik protein_coding protein_coding MGP_AJ_T0035411.1 MGP_AJ_G0019922.1 mouse_genomes_project 12 83327919 83336773 - 0610007P14Rik protein_coding processed_transcript MGP_AJ_T0035412.1 MGP_AJ_G0019922.1 mouse_genomes_project 12 83331357 83336805 - 0610007P14Rik protein_coding retained_intron MGP_AJ_T0035413.1 MGP_AJ_G0019922.1 mouse_genomes_project 12 83331592 83334511 - 0610007P14Rik protein_coding retained_intron MGP_AJ_T0035414.1 MGP_AJ_G0019922.1 mouse_genomes_project 12 83331799 83336811 - MGP_AJ_P0035414 0610007P14Rik protein_coding protein_coding MGP_AJ_T0003424.1 MGP_AJ_G0003140.1 mouse_genomes_project 12 115720316 115824247 - Gm5441 antisense antisense MGP_AJ_T0003425.1 MGP_AJ_G0003140.1 mouse_genomes_project 12 115765033 115824257 - Gm5441 antisense antisense MGP_AJ_T0000260.1 MGP_AJ_G0000204.1 mouse_genomes_project 12 113247288 113247722 - IG_V_pseudogene IG_V_pseudogene MGP_AJ_T0012860.1 MGP_AJ_G0010955.1 mouse_genomes_project 12 105531208 105532045 + processed_pseudogene processed_pseudogene MGP_AJ_T0035711.1 MGP_AJ_G0020004.1 mouse_genomes_project 12 101047475 101048474 - MGP_AJ_P0035711 9330161L09Rik protein_coding protein_coding MGP_AJ_T0035739.1 MGP_AJ_G0020013.1 mouse_genomes_project 12 101440156 101450757 - MGP_AJ_P0035739 protein_coding protein_coding MGP_AJ_T0035264.1 MGP_AJ_G0019873.1 mouse_genomes_project 12 81143546 81190211 + MGP_AJ_P0035264 Psen1 protein_coding protein_coding MGP_AJ_T0035265.1 MGP_AJ_G0019873.1 mouse_genomes_project 12 81143906 81191297 + MGP_AJ_P0035265 Psen1 protein_coding protein_coding MGP_AJ_T0034345.1 MGP_AJ_G0019549.1 mouse_genomes_project 12 5103611 5180069 + MGP_AJ_P0034345 Ldah protein_coding protein_coding MGP_AJ_T0034319.1 MGP_AJ_G0019539.1 mouse_genomes_project 12 1627490 1655047 - MGP_AJ_P0034319 Fam228b protein_coding unknown_likely_coding MGP_AJ_T0034320.1 MGP_AJ_G0019539.1 mouse_genomes_project 12 1632638 1655817 - MGP_AJ_P0034320 Fam228b protein_coding protein_coding MGP_AJ_T0099407.1 MGP_AJ_G0037373.1 mouse_genomes_project 12 51796112 51796276 - Gm22634 snRNA snRNA MGP_AJ_T0006418.1 MGP_AJ_G0005346.1 mouse_genomes_project 12 66969477 66975900 + 4931403G20Rik lincRNA lincRNA MGP_AJ_T0035030.1 MGP_AJ_G0019796.1 mouse_genomes_project 12 70700730 70704012 - MGP_AJ_P0035030 Tmem30b protein_coding protein_coding MGP_AJ_T0035186.1 MGP_AJ_G0019858.1 mouse_genomes_project 12 78811267 78954334 - MGP_AJ_P0035186 Cox16 protein_coding protein_coding MGP_AJ_T0035187.1 MGP_AJ_G0019858.1 mouse_genomes_project 12 78811409 78954297 - MGP_AJ_P0035187 Cox16 protein_coding protein_coding MGP_AJ_T0035190.1 MGP_AJ_G0019858.1 mouse_genomes_project 12 78936751 78954344 - MGP_AJ_P0035190 Cox16 protein_coding protein_coding MGP_AJ_T0035191.1 MGP_AJ_G0019858.1 mouse_genomes_project 12 78938136 78954053 - Cox16 protein_coding processed_transcript MGP_AJ_T0035192.1 MGP_AJ_G0019858.1 mouse_genomes_project 12 78938136 78954337 - MGP_AJ_P0035192 Cox16 protein_coding protein_coding MGP_AJ_T0035193.1 MGP_AJ_G0019858.1 mouse_genomes_project 12 78938138 78954075 - Cox16 protein_coding processed_transcript MGP_AJ_T0035194.1 MGP_AJ_G0019858.1 mouse_genomes_project 12 78940277 78954351 - Cox16 protein_coding processed_transcript MGP_AJ_T0035195.1 MGP_AJ_G0019858.1 mouse_genomes_project 12 78940298 78954338 - MGP_AJ_P0035195 Cox16 protein_coding protein_coding MGP_AJ_T0035199.1 MGP_AJ_G0019858.1 mouse_genomes_project 12 78949208 78954309 - Cox16 protein_coding retained_intron MGP_AJ_T0012841.1 MGP_AJ_G0010936.1 mouse_genomes_project 12 84243528 84243987 + processed_pseudogene processed_pseudogene MGP_AJ_T0035214.1 MGP_AJ_G0019866.1 mouse_genomes_project 12 79615095 79892371 + MGP_AJ_P0035214 Sipa1l1 protein_coding protein_coding MGP_AJ_T0035215.1 MGP_AJ_G0019866.1 mouse_genomes_project 12 79755217 79892371 + MGP_AJ_P0035215 Sipa1l1 protein_coding protein_coding MGP_AJ_T0035201.1 MGP_AJ_G0019860.1 mouse_genomes_project 12 78965200 79011226 - MGP_AJ_P0035201 protein_coding protein_coding MGP_AJ_T0035202.1 MGP_AJ_G0019860.1 mouse_genomes_project 12 78973458 78982742 - protein_coding retained_intron MGP_AJ_T0035203.1 MGP_AJ_G0019860.1 mouse_genomes_project 12 78981900 78989209 - MGP_AJ_P0035203 protein_coding protein_coding MGP_AJ_T0035204.1 MGP_AJ_G0019860.1 mouse_genomes_project 12 78982030 79011207 - MGP_AJ_P0035204 protein_coding protein_coding MGP_AJ_T0000250.1 MGP_AJ_G0000194.1 mouse_genomes_project 12 112673875 112674168 - IG_V_pseudogene IG_V_pseudogene MGP_AJ_T0035736.1 MGP_AJ_G0020012.1 mouse_genomes_project 12 101341153 101347776 - MGP_AJ_P0035736 Serpina1f protein_coding protein_coding MGP_AJ_T0035737.1 MGP_AJ_G0020012.1 mouse_genomes_project 12 101342742 101348639 - MGP_AJ_P0035737 Serpina1f protein_coding protein_coding MGP_AJ_T0035738.1 MGP_AJ_G0020012.1 mouse_genomes_project 12 101342745 101347826 - MGP_AJ_P0035738 Serpina1f protein_coding protein_coding MGP_AJ_T0012806.1 MGP_AJ_G0010901.1 mouse_genomes_project 12 33245297 33245453 + processed_pseudogene processed_pseudogene MGP_AJ_T0098554.1 MGP_AJ_G0036538.1 mouse_genomes_project 12 22787894 22788000 + Gm22527 rRNA rRNA MGP_AJ_T0035742.1 MGP_AJ_G0020016.1 mouse_genomes_project 12 101440158 101677634 - MGP_AJ_P0035742 protein_coding protein_coding MGP_AJ_T0034385.1 MGP_AJ_G0019562.1 mouse_genomes_project 12 7306155 7310904 + MGP_AJ_P0034385 Rdh14 protein_coding protein_coding MGP_AJ_T0012812.1 MGP_AJ_G0010907.1 mouse_genomes_project 12 51757625 51758129 - processed_pseudogene processed_pseudogene MGP_AJ_T0000094.1 MGP_AJ_G0000073.1 mouse_genomes_project 12 112576822 112577501 - MGP_AJ_P0000094 Ighv6-3 IG_V_gene IG_V_gene MGP_AJ_T0003396.1 MGP_AJ_G0003116.1 mouse_genomes_project 12 54696573 54723898 - 4921518K17Rik antisense antisense MGP_AJ_T0035142.1 MGP_AJ_G0019840.1 mouse_genomes_project 12 76636195 76649870 + MGP_AJ_P0035142 Rdh12 protein_coding protein_coding MGP_AJ_T0035143.1 MGP_AJ_G0019840.1 mouse_genomes_project 12 76636212 76649869 + MGP_AJ_P0035143 Rdh12 protein_coding protein_coding MGP_AJ_T0035144.1 MGP_AJ_G0019840.1 mouse_genomes_project 12 76636228 76649869 + Rdh12 protein_coding retained_intron MGP_AJ_T0035145.1 MGP_AJ_G0019840.1 mouse_genomes_project 12 76636678 76649874 + MGP_AJ_P0035145 Rdh12 protein_coding unknown_likely_coding MGP_AJ_T0035146.1 MGP_AJ_G0019840.1 mouse_genomes_project 12 76637942 76640037 + MGP_AJ_P0035146 Rdh12 protein_coding protein_coding MGP_AJ_T0034640.1 MGP_AJ_G0019659.1 mouse_genomes_project 12 33529290 33530230 - MGP_AJ_P0034640 D630036H23Rik protein_coding protein_coding MGP_AJ_T0000099.1 MGP_AJ_G0000076.1 mouse_genomes_project 12 112627122 112627579 - MGP_AJ_P0000099 IG_V_gene IG_V_gene MGP_AJ_T0035843.1 MGP_AJ_G0020061.1 mouse_genomes_project 12 106619297 106634856 - MGP_AJ_P0035843 Degs2 protein_coding protein_coding MGP_AJ_T0035844.1 MGP_AJ_G0020061.1 mouse_genomes_project 12 106622727 106634856 - MGP_AJ_P0035844 Degs2 protein_coding protein_coding MGP_AJ_T0009858.1 MGP_AJ_G0007980.1 mouse_genomes_project 12 107638381 107638467 + Mir323 miRNA miRNA MGP_AJ_T0006430.1 MGP_AJ_G0005354.1 mouse_genomes_project 12 77947432 77956398 - Gm26777 lincRNA lincRNA MGP_AJ_T0035048.1 MGP_AJ_G0019805.1 mouse_genomes_project 12 72598945 72604007 - MGP_AJ_P0035048 Gphb5 protein_coding protein_coding MGP_AJ_T0009905.1 MGP_AJ_G0008027.1 mouse_genomes_project 12 114523970 114524037 - Gm27722 miRNA miRNA MGP_AJ_T0100642.1 MGP_AJ_G0038608.1 mouse_genomes_project 12 13844957 13845079 + Gm22303 snoRNA snoRNA MGP_AJ_T0100675.1 MGP_AJ_G0038641.1 mouse_genomes_project 12 78972902 78973023 + Gm24853 snoRNA snoRNA MGP_AJ_T0100678.1 MGP_AJ_G0038644.1 mouse_genomes_project 12 84990787 84990923 - Mir3068 snoRNA snoRNA MGP_AJ_T0035678.1 MGP_AJ_G0019994.1 mouse_genomes_project 12 100383264 100387066 + MGP_AJ_P0035678 Tmem251 protein_coding protein_coding MGP_AJ_T0099398.1 MGP_AJ_G0037364.1 mouse_genomes_project 12 46041518 46041625 + Gm26454 snRNA snRNA MGP_AJ_T0035847.1 MGP_AJ_G0020063.1 mouse_genomes_project 12 106762223 106772222 - MGP_AJ_P0035847 Slc25a29 protein_coding protein_coding MGP_AJ_T0035848.1 MGP_AJ_G0020063.1 mouse_genomes_project 12 106763574 106767970 - Slc25a29 protein_coding retained_intron MGP_AJ_T0035849.1 MGP_AJ_G0020063.1 mouse_genomes_project 12 106767296 106772159 - Slc25a29 protein_coding retained_intron MGP_AJ_T0100698.1 MGP_AJ_G0038664.1 mouse_genomes_project 12 107583127 107583199 + Gm27604 snoRNA snoRNA MGP_AJ_T0035757.1 MGP_AJ_G0020024.1 mouse_genomes_project 12 101975909 101981898 + MGP_AJ_P0035757 Serpina3f protein_coding protein_coding MGP_AJ_T0035758.1 MGP_AJ_G0020024.1 mouse_genomes_project 12 101977643 101981904 + MGP_AJ_P0035758 Serpina3f protein_coding protein_coding MGP_AJ_T0035360.1 MGP_AJ_G0019905.1 mouse_genomes_project 12 82417808 82470647 - MGP_AJ_P0035360 Arel1 protein_coding nonsense_mediated_decay MGP_AJ_T0035361.1 MGP_AJ_G0019905.1 mouse_genomes_project 12 82417810 82470723 - MGP_AJ_P0035361 Arel1 protein_coding protein_coding MGP_AJ_T0035362.1 MGP_AJ_G0019905.1 mouse_genomes_project 12 82433968 82443201 - MGP_AJ_P0035362 Arel1 protein_coding nonsense_mediated_decay MGP_AJ_T0035363.1 MGP_AJ_G0019905.1 mouse_genomes_project 12 82439160 82446746 - MGP_AJ_P0035363 Arel1 protein_coding protein_coding MGP_AJ_T0035364.1 MGP_AJ_G0019905.1 mouse_genomes_project 12 82440760 82445221 - MGP_AJ_P0035364 Arel1 protein_coding protein_coding MGP_AJ_T0035365.1 MGP_AJ_G0019905.1 mouse_genomes_project 12 82440781 82470679 - MGP_AJ_P0035365 Arel1 protein_coding protein_coding MGP_AJ_T0035366.1 MGP_AJ_G0019905.1 mouse_genomes_project 12 82440790 82470661 - MGP_AJ_P0035366 Arel1 protein_coding protein_coding MGP_AJ_T0035367.1 MGP_AJ_G0019905.1 mouse_genomes_project 12 82450904 82465853 - Arel1 protein_coding processed_transcript MGP_AJ_T0006386.1 MGP_AJ_G0005322.1 mouse_genomes_project 12 2255187 2297006 + 2810032G03Rik lincRNA lincRNA MGP_AJ_T0006387.1 MGP_AJ_G0005322.1 mouse_genomes_project 12 2292257 2297332 + 2810032G03Rik lincRNA lincRNA MGP_AJ_T0035648.1 MGP_AJ_G0019983.1 mouse_genomes_project 12 99548478 99587652 - MGP_AJ_P0035648 Atxn3 protein_coding protein_coding MGP_AJ_T0035649.1 MGP_AJ_G0019983.1 mouse_genomes_project 12 99552658 99563933 - MGP_AJ_P0035649 Atxn3 protein_coding nonsense_mediated_decay MGP_AJ_T0035650.1 MGP_AJ_G0019983.1 mouse_genomes_project 12 99562501 99587649 - MGP_AJ_P0035650 Atxn3 protein_coding protein_coding MGP_AJ_T0035651.1 MGP_AJ_G0019983.1 mouse_genomes_project 12 99562503 99587649 - MGP_AJ_P0035651 Atxn3 protein_coding protein_coding MGP_AJ_T0035652.1 MGP_AJ_G0019983.1 mouse_genomes_project 12 99562526 99587554 - MGP_AJ_P0035652 Atxn3 protein_coding protein_coding MGP_AJ_T0006401.1 MGP_AJ_G0005333.1 mouse_genomes_project 12 25592781 25597016 - 1700022F17Rik lincRNA lincRNA MGP_AJ_T0034962.1 MGP_AJ_G0019774.1 mouse_genomes_project 12 68254788 68268285 - MGP_AJ_P0034962 Timm9 protein_coding protein_coding MGP_AJ_T0034963.1 MGP_AJ_G0019774.1 mouse_genomes_project 12 68254788 68268285 - MGP_AJ_P0034963 Timm9 protein_coding protein_coding MGP_AJ_T0011338.1 MGP_AJ_G0009460.1 mouse_genomes_project 12 107453389 107453594 + Gm27528 misc_RNA misc_RNA MGP_AJ_T0035776.1 MGP_AJ_G0020038.1 mouse_genomes_project 12 102969101 103047092 + MGP_AJ_P0035776 Tcl1b1 protein_coding protein_coding MGP_AJ_T0009850.1 MGP_AJ_G0007972.1 mouse_genomes_project 12 107606826 107606903 + Mir882 miRNA miRNA MGP_AJ_T0035779.1 MGP_AJ_G0020040.1 mouse_genomes_project 12 102999466 103010189 + MGP_AJ_P0035779 Tcl1b5 protein_coding protein_coding MGP_AJ_T0034453.1 MGP_AJ_G0019589.1 mouse_genomes_project 12 18113284 18130218 - MGP_AJ_P0034453 Itgb1bp1 protein_coding protein_coding MGP_AJ_T0034454.1 MGP_AJ_G0019589.1 mouse_genomes_project 12 18113576 18130078 - MGP_AJ_P0034454 Itgb1bp1 protein_coding protein_coding MGP_AJ_T0034455.1 MGP_AJ_G0019589.1 mouse_genomes_project 12 18114183 18115603 - MGP_AJ_P0034455 Itgb1bp1 protein_coding protein_coding MGP_AJ_T0034456.1 MGP_AJ_G0019589.1 mouse_genomes_project 12 18114767 18130166 - MGP_AJ_P0034456 Itgb1bp1 protein_coding protein_coding MGP_AJ_T0034457.1 MGP_AJ_G0019589.1 mouse_genomes_project 12 18114905 18116256 - Itgb1bp1 protein_coding retained_intron MGP_AJ_T0006420.1 MGP_AJ_G0005348.1 mouse_genomes_project 12 68518708 68519755 - 1700083H02Rik lincRNA lincRNA MGP_AJ_T0034321.1 MGP_AJ_G0019540.1 mouse_genomes_project 12 1655844 1664773 + MGP_AJ_P0034321 Pfn4 protein_coding protein_coding MGP_AJ_T0034322.1 MGP_AJ_G0019540.1 mouse_genomes_project 12 1656000 1664745 + MGP_AJ_P0034322 Pfn4 protein_coding protein_coding MGP_AJ_T0000251.1 MGP_AJ_G0000195.1 mouse_genomes_project 12 112684383 112684674 - IG_V_pseudogene IG_V_pseudogene MGP_AJ_T0034458.1 MGP_AJ_G0019590.1 mouse_genomes_project 12 18130277 18159398 + MGP_AJ_P0034458 Cpsf3 protein_coding protein_coding MGP_AJ_T0035795.1 MGP_AJ_G0020048.1 mouse_genomes_project 12 103551845 103574674 + MGP_AJ_P0035795 Gskip protein_coding protein_coding MGP_AJ_T0035609.1 MGP_AJ_G0019971.1 mouse_genomes_project 12 97770802 97804965 - MGP_AJ_P0035609 Nrde2 protein_coding protein_coding MGP_AJ_T0034296.1 MGP_AJ_G0019530.1 mouse_genomes_project 12 961524 993648 + MGP_AJ_P0034296 Dnajc27 protein_coding protein_coding MGP_AJ_T0034297.1 MGP_AJ_G0019530.1 mouse_genomes_project 12 961579 992240 + MGP_AJ_P0034297 Dnajc27 protein_coding protein_coding MGP_AJ_T0035238.1 MGP_AJ_G0019869.1 mouse_genomes_project 12 80654201 80794258 - MGP_AJ_P0035238 Dpf3 protein_coding protein_coding MGP_AJ_T0035239.1 MGP_AJ_G0019869.1 mouse_genomes_project 12 80654207 80936567 - MGP_AJ_P0035239 Dpf3 protein_coding protein_coding MGP_AJ_T0035240.1 MGP_AJ_G0019869.1 mouse_genomes_project 12 80702655 80735490 - MGP_AJ_P0035240 Dpf3 protein_coding protein_coding MGP_AJ_T0035241.1 MGP_AJ_G0019869.1 mouse_genomes_project 12 80709018 80936559 - MGP_AJ_P0035241 Dpf3 protein_coding protein_coding MGP_AJ_T0035242.1 MGP_AJ_G0019869.1 mouse_genomes_project 12 80711360 80936559 - MGP_AJ_P0035242 Dpf3 protein_coding protein_coding MGP_AJ_T0035243.1 MGP_AJ_G0019869.1 mouse_genomes_project 12 80711477 80886965 - MGP_AJ_P0035243 Dpf3 protein_coding protein_coding MGP_AJ_T0000854.1 MGP_AJ_G0000789.1 mouse_genomes_project 12 22665847 22704815 - TEC TEC MGP_AJ_T0034553.1 MGP_AJ_G0019626.1 mouse_genomes_project 12 28448680 28468506 - MGP_AJ_P0034553 Dld protein_coding protein_coding MGP_AJ_T0034313.1 MGP_AJ_G0019534.1 mouse_genomes_project 12 1131576 1362814 - MGP_AJ_P0034313 Ncoa1 protein_coding protein_coding MGP_AJ_T0011331.1 MGP_AJ_G0009453.1 mouse_genomes_project 12 68863107 68863409 + Gm22959 misc_RNA misc_RNA MGP_AJ_T0100657.1 MGP_AJ_G0038623.1 mouse_genomes_project 12 42112252 42112383 + Gm24731 snoRNA snoRNA MGP_AJ_T0009821.1 MGP_AJ_G0007943.1 mouse_genomes_project 12 100324231 100324324 - Mir1936 miRNA miRNA MGP_AJ_T0035113.1 MGP_AJ_G0019826.1 mouse_genomes_project 12 74447588 74692928 + MGP_AJ_P0035113 Fut8 protein_coding protein_coding MGP_AJ_T0035114.1 MGP_AJ_G0019826.1 mouse_genomes_project 12 74447588 74692928 + MGP_AJ_P0035114 Fut8 protein_coding protein_coding MGP_AJ_T0035115.1 MGP_AJ_G0019826.1 mouse_genomes_project 12 74448549 74693270 + MGP_AJ_P0035115 Fut8 protein_coding protein_coding MGP_AJ_T0009847.1 MGP_AJ_G0007969.1 mouse_genomes_project 12 107534678 107534798 + Mir1188 miRNA miRNA MGP_AJ_T0012801.1 MGP_AJ_G0010896.1 mouse_genomes_project 12 10677499 10678475 - processed_pseudogene processed_pseudogene MGP_AJ_T0035024.1 MGP_AJ_G0019794.1 mouse_genomes_project 12 70445759 70511656 + MGP_AJ_P0035024 Slc38a6 protein_coding protein_coding MGP_AJ_T0035025.1 MGP_AJ_G0019794.1 mouse_genomes_project 12 70445770 70474091 + MGP_AJ_P0035025 Slc38a6 protein_coding protein_coding MGP_AJ_T0035026.1 MGP_AJ_G0019794.1 mouse_genomes_project 12 70445888 70474080 + MGP_AJ_P0035026 Slc38a6 protein_coding protein_coding MGP_AJ_T0035027.1 MGP_AJ_G0019794.1 mouse_genomes_project 12 70473703 70497729 + Slc38a6 protein_coding retained_intron MGP_AJ_T0035028.1 MGP_AJ_G0019794.1 mouse_genomes_project 12 70502089 70509139 + Slc38a6 protein_coding retained_intron MGP_AJ_T0009828.1 MGP_AJ_G0007950.1 mouse_genomes_project 12 107239423 107239490 - Gm25297 miRNA miRNA MGP_AJ_T0006504.1 MGP_AJ_G0005401.1 mouse_genomes_project 12 109587511 109589602 - 2810029C07Rik lincRNA lincRNA MGP_AJ_T0035918.1 MGP_AJ_G0020083.1 mouse_genomes_project 12 109170151 109195781 - MGP_AJ_P0035918 4930595D18Rik protein_coding protein_coding MGP_AJ_T0000118.1 MGP_AJ_G0000090.1 mouse_genomes_project 12 113913499 113913802 - MGP_AJ_P0000118 IG_V_gene IG_V_gene MGP_AJ_T0000122.1 MGP_AJ_G0000090.1 mouse_genomes_project 12 113913503 113913802 - MGP_AJ_P0000122 IG_V_gene IG_V_gene MGP_AJ_T0009895.1 MGP_AJ_G0008017.1 mouse_genomes_project 12 108205419 108205501 - Mir1247 miRNA miRNA MGP_AJ_T0006461.1 MGP_AJ_G0005381.1 mouse_genomes_project 12 104740266 104781320 + 1700013N06Rik lincRNA lincRNA MGP_AJ_T0035139.1 MGP_AJ_G0019839.1 mouse_genomes_project 12 76599917 76618735 - MGP_AJ_P0035139 Rdh11 protein_coding protein_coding MGP_AJ_T0035140.1 MGP_AJ_G0019839.1 mouse_genomes_project 12 76601131 76617403 - MGP_AJ_P0035140 Rdh11 protein_coding protein_coding MGP_AJ_T0035141.1 MGP_AJ_G0019839.1 mouse_genomes_project 12 76601745 76618235 - MGP_AJ_P0035141 Rdh11 protein_coding nonsense_mediated_decay MGP_AJ_T0034733.1 MGP_AJ_G0019693.1 mouse_genomes_project 12 49119059 49320903 + MGP_AJ_P0034733 Nubpl protein_coding protein_coding MGP_AJ_T0034734.1 MGP_AJ_G0019693.1 mouse_genomes_project 12 49119078 49161036 + Nubpl protein_coding retained_intron MGP_AJ_T0034735.1 MGP_AJ_G0019693.1 mouse_genomes_project 12 49119083 49122407 + Nubpl protein_coding retained_intron MGP_AJ_T0034736.1 MGP_AJ_G0019693.1 mouse_genomes_project 12 49148635 49309810 + MGP_AJ_P0034736 Nubpl protein_coding nonsense_mediated_decay MGP_AJ_T0034892.1 MGP_AJ_G0019751.1 mouse_genomes_project 12 66414970 66419645 + Klhdc2 protein_coding retained_intron MGP_AJ_T0034893.1 MGP_AJ_G0019751.1 mouse_genomes_project 12 66415011 66429339 + MGP_AJ_P0034893 Klhdc2 protein_coding protein_coding MGP_AJ_T0034894.1 MGP_AJ_G0019751.1 mouse_genomes_project 12 66415044 66427173 + Klhdc2 protein_coding retained_intron MGP_AJ_T0034895.1 MGP_AJ_G0019751.1 mouse_genomes_project 12 66420923 66427201 + Klhdc2 protein_coding retained_intron MGP_AJ_T0100658.1 MGP_AJ_G0038624.1 mouse_genomes_project 12 42981046 42981253 + Gm24948 snoRNA snoRNA MGP_AJ_T0009783.1 MGP_AJ_G0007905.1 mouse_genomes_project 12 23518554 23518664 - Mir6538 miRNA miRNA MGP_AJ_T0035899.1 MGP_AJ_G0020076.1 mouse_genomes_project 12 108768123 108783522 + MGP_AJ_P0035899 protein_coding protein_coding MGP_AJ_T0012862.1 MGP_AJ_G0010957.1 mouse_genomes_project 12 111190277 111191097 - processed_pseudogene processed_pseudogene MGP_AJ_T0009798.1 MGP_AJ_G0007920.1 mouse_genomes_project 12 66481330 66481410 - miRNA miRNA MGP_AJ_T0035121.1 MGP_AJ_G0019830.1 mouse_genomes_project 12 76178700 76265114 + MGP_AJ_P0035121 Mpp5 protein_coding unknown_likely_coding MGP_AJ_T0098563.1 MGP_AJ_G0036547.1 mouse_genomes_project 12 79595374 79595470 + n-R5s62 rRNA rRNA MGP_AJ_T0035147.1 MGP_AJ_G0019841.1 mouse_genomes_project 12 76663147 76727679 - MGP_AJ_P0035147 Zfyve26 protein_coding protein_coding MGP_AJ_T0035771.1 MGP_AJ_G0020034.1 mouse_genomes_project 12 102531725 102635298 - MGP_AJ_P0035771 Clmn protein_coding protein_coding MGP_AJ_T0035772.1 MGP_AJ_G0020034.1 mouse_genomes_project 12 102531725 102635298 - MGP_AJ_P0035772 Clmn protein_coding protein_coding MGP_AJ_T0009888.1 MGP_AJ_G0008010.1 mouse_genomes_project 12 107668287 107668377 + Mir541 miRNA miRNA MGP_AJ_T0009793.1 MGP_AJ_G0007915.1 mouse_genomes_project 12 51691954 51692034 - Mir1892 miRNA miRNA MGP_AJ_T0017300.1 MGP_AJ_G0015204.1 mouse_genomes_project 12 42443772 42448290 + Gm9921 processed_transcript processed_transcript MGP_AJ_T0035041.1 MGP_AJ_G0019802.1 mouse_genomes_project 12 71502323 71503547 - MGP_AJ_P0035041 Gm11042 protein_coding protein_coding MGP_AJ_T0035037.1 MGP_AJ_G0019799.1 mouse_genomes_project 12 71136516 71163677 + MGP_AJ_P0035037 Snapc1 protein_coding protein_coding MGP_AJ_T0036028.1 MGP_AJ_G0020124.1 mouse_genomes_project 12 111018106 111020054 + MGP_AJ_P0036028 protein_coding protein_coding MGP_AJ_T0012803.1 MGP_AJ_G0010898.1 mouse_genomes_project 12 15063401 15064031 - processed_pseudogene processed_pseudogene MGP_AJ_T0098823.1 MGP_AJ_G0036807.1 mouse_genomes_project 12 28989714 28989849 + Gm25913 scaRNA scaRNA MGP_AJ_T0034487.1 MGP_AJ_G0019599.1 mouse_genomes_project 12 21776769 21782885 + MGP_AJ_P0034487 Rrm2 protein_coding protein_coding MGP_AJ_T0034488.1 MGP_AJ_G0019599.1 mouse_genomes_project 12 21777084 21778108 + Rrm2 protein_coding retained_intron MGP_AJ_T0034489.1 MGP_AJ_G0019599.1 mouse_genomes_project 12 21777280 21780396 + MGP_AJ_P0034489 Rrm2 protein_coding protein_coding MGP_AJ_T0034490.1 MGP_AJ_G0019599.1 mouse_genomes_project 12 21777557 21782079 + MGP_AJ_P0034490 Rrm2 protein_coding protein_coding MGP_AJ_T0035087.1 MGP_AJ_G0019817.1 mouse_genomes_project 12 73622891 73645077 + MGP_AJ_P0035087 Ppp1r36 protein_coding protein_coding MGP_AJ_T0100667.1 MGP_AJ_G0038633.1 mouse_genomes_project 12 62154617 62154703 + Gm25970 snoRNA snoRNA MGP_AJ_T0000238.1 MGP_AJ_G0000182.1 mouse_genomes_project 12 111980428 111980725 - IG_V_pseudogene IG_V_pseudogene MGP_AJ_T0000123.1 MGP_AJ_G0000093.1 mouse_genomes_project 12 113913505 113913944 - MGP_AJ_P0000123 IG_V_gene IG_V_gene MGP_AJ_T0035774.1 MGP_AJ_G0020036.1 mouse_genomes_project 12 102702760 102746230 - MGP_AJ_P0035774 Syne3 protein_coding protein_coding MGP_AJ_T0036030.1 MGP_AJ_G0020126.1 mouse_genomes_project 12 111093531 111107718 + MGP_AJ_P0036030 Tex22 protein_coding protein_coding MGP_AJ_T0036031.1 MGP_AJ_G0020126.1 mouse_genomes_project 12 111093531 111107725 + MGP_AJ_P0036031 Tex22 protein_coding protein_coding MGP_AJ_T0036032.1 MGP_AJ_G0020126.1 mouse_genomes_project 12 111093790 111107725 + MGP_AJ_P0036032 Tex22 protein_coding protein_coding MGP_AJ_T0036033.1 MGP_AJ_G0020126.1 mouse_genomes_project 12 111093812 111094406 + MGP_AJ_P0036033 Tex22 protein_coding protein_coding MGP_AJ_T0035368.1 MGP_AJ_G0019906.1 mouse_genomes_project 12 82470719 82484984 + MGP_AJ_P0035368 Fcf1 protein_coding protein_coding MGP_AJ_T0035369.1 MGP_AJ_G0019906.1 mouse_genomes_project 12 82470803 82484972 + MGP_AJ_P0035369 Fcf1 protein_coding protein_coding MGP_AJ_T0035370.1 MGP_AJ_G0019906.1 mouse_genomes_project 12 82481890 82484978 + Fcf1 protein_coding retained_intron MGP_AJ_T0011340.1 MGP_AJ_G0009462.1 mouse_genomes_project 12 107465240 107465337 + Gm27335 misc_RNA misc_RNA MGP_AJ_T0035480.1 MGP_AJ_G0019940.1 mouse_genomes_project 12 84771518 84783803 - MGP_AJ_P0035480 Noxred1 protein_coding protein_coding MGP_AJ_T0035939.1 MGP_AJ_G0020090.1 mouse_genomes_project 12 109493686 109494899 - MGP_AJ_P0035939 Gm266 protein_coding protein_coding MGP_AJ_T0034404.1 MGP_AJ_G0019576.1 mouse_genomes_project 12 13441210 13496680 - MGP_AJ_P0034404 Lpin1 protein_coding protein_coding MGP_AJ_T0034405.1 MGP_AJ_G0019576.1 mouse_genomes_project 12 13441210 13496680 - MGP_AJ_P0034405 Lpin1 protein_coding protein_coding MGP_AJ_T0035994.1 MGP_AJ_G0020107.1 mouse_genomes_project 12 110518654 110525170 + MGP_AJ_P0035994 A530016L24Rik protein_coding unknown_likely_coding MGP_AJ_T0034739.1 MGP_AJ_G0019696.1 mouse_genomes_project 12 50268659 51102179 + MGP_AJ_P0034739 Npas3 protein_coding protein_coding MGP_AJ_T0034740.1 MGP_AJ_G0019696.1 mouse_genomes_project 12 50268659 51102180 + MGP_AJ_P0034740 Npas3 protein_coding unknown_likely_coding MGP_AJ_T0035269.1 MGP_AJ_G0019875.1 mouse_genomes_project 12 81251459 81381899 - MGP_AJ_P0035269 Numb protein_coding protein_coding MGP_AJ_T0035270.1 MGP_AJ_G0019875.1 mouse_genomes_project 12 81251461 81336387 - MGP_AJ_P0035270 Numb protein_coding nonsense_mediated_decay MGP_AJ_T0035271.1 MGP_AJ_G0019875.1 mouse_genomes_project 12 81251496 81381809 - MGP_AJ_P0035271 Numb protein_coding nonsense_mediated_decay MGP_AJ_T0035272.1 MGP_AJ_G0019875.1 mouse_genomes_project 12 81252864 81300312 - MGP_AJ_P0035272 Numb protein_coding protein_coding MGP_AJ_T0035273.1 MGP_AJ_G0019875.1 mouse_genomes_project 12 81252864 81300312 - MGP_AJ_P0035273 Numb protein_coding protein_coding MGP_AJ_T0035274.1 MGP_AJ_G0019875.1 mouse_genomes_project 12 81252864 81300312 - MGP_AJ_P0035274 Numb protein_coding protein_coding MGP_AJ_T0035275.1 MGP_AJ_G0019875.1 mouse_genomes_project 12 81261395 81381832 - MGP_AJ_P0035275 Numb protein_coding protein_coding MGP_AJ_T0035276.1 MGP_AJ_G0019875.1 mouse_genomes_project 12 81265609 81381821 - MGP_AJ_P0035276 Numb protein_coding protein_coding MGP_AJ_T0035277.1 MGP_AJ_G0019875.1 mouse_genomes_project 12 81265680 81381848 - MGP_AJ_P0035277 Numb protein_coding protein_coding MGP_AJ_T0035278.1 MGP_AJ_G0019875.1 mouse_genomes_project 12 81268961 81381855 - MGP_AJ_P0035278 Numb protein_coding protein_coding MGP_AJ_T0035279.1 MGP_AJ_G0019875.1 mouse_genomes_project 12 81289694 81336375 - Numb protein_coding retained_intron MGP_AJ_T0011341.1 MGP_AJ_G0009463.1 mouse_genomes_project 12 107526692 107526790 + Gm27350 misc_RNA misc_RNA MGP_AJ_T0000104.1 MGP_AJ_G0000081.1 mouse_genomes_project 12 112720798 112721245 - MGP_AJ_P0000104 IG_V_gene IG_V_gene MGP_AJ_T0035472.1 MGP_AJ_G0019936.1 mouse_genomes_project 12 84654201 84695727 - MGP_AJ_P0035472 Pomt2 protein_coding protein_coding MGP_AJ_T0017334.1 MGP_AJ_G0015217.1 mouse_genomes_project 12 114617531 114653747 - Gm20658 processed_transcript processed_transcript MGP_AJ_T0017335.1 MGP_AJ_G0015217.1 mouse_genomes_project 12 114617554 114653862 - Gm20658 processed_transcript processed_transcript MGP_AJ_T0009837.1 MGP_AJ_G0007959.1 mouse_genomes_project 12 107511107 107511196 + Mir3070a miRNA miRNA MGP_AJ_T0035398.1 MGP_AJ_G0019915.1 mouse_genomes_project 12 82791563 82802331 + MGP_AJ_P0035398 Zc2hc1c protein_coding protein_coding MGP_AJ_T0035822.1 MGP_AJ_G0020054.1 mouse_genomes_project 12 106037100 106108927 - MGP_AJ_P0035822 protein_coding unknown_likely_coding MGP_AJ_T0035823.1 MGP_AJ_G0020054.1 mouse_genomes_project 12 106041902 106044856 - protein_coding processed_transcript MGP_AJ_T0035824.1 MGP_AJ_G0020054.1 mouse_genomes_project 12 106046542 106108802 - MGP_AJ_P0035824 protein_coding protein_coding MGP_AJ_T0035825.1 MGP_AJ_G0020054.1 mouse_genomes_project 12 106046801 106108849 - MGP_AJ_P0035825 protein_coding nonsense_mediated_decay MGP_AJ_T0035826.1 MGP_AJ_G0020054.1 mouse_genomes_project 12 106048064 106092579 - protein_coding processed_transcript MGP_AJ_T0035827.1 MGP_AJ_G0020054.1 mouse_genomes_project 12 106087554 106108799 - MGP_AJ_P0035827 protein_coding protein_coding MGP_AJ_T0006487.1 MGP_AJ_G0005396.1 mouse_genomes_project 12 107655636 107675127 + Mirg lincRNA lincRNA MGP_AJ_T0006488.1 MGP_AJ_G0005396.1 mouse_genomes_project 12 107655637 107656714 + Mirg lincRNA lincRNA MGP_AJ_T0006489.1 MGP_AJ_G0005396.1 mouse_genomes_project 12 107656148 107675127 + Mirg lincRNA lincRNA MGP_AJ_T0006490.1 MGP_AJ_G0005396.1 mouse_genomes_project 12 107656831 107675129 + Mirg lincRNA lincRNA MGP_AJ_T0006491.1 MGP_AJ_G0005396.1 mouse_genomes_project 12 107660862 107675127 + Mirg lincRNA lincRNA MGP_AJ_T0006492.1 MGP_AJ_G0005396.1 mouse_genomes_project 12 107660862 107669612 + Mirg lincRNA lincRNA MGP_AJ_T0006493.1 MGP_AJ_G0005396.1 mouse_genomes_project 12 107660866 107673844 + Mirg lincRNA lincRNA MGP_AJ_T0006494.1 MGP_AJ_G0005396.1 mouse_genomes_project 12 107663579 107665939 + Mirg lincRNA lincRNA MGP_AJ_T0006495.1 MGP_AJ_G0005396.1 mouse_genomes_project 12 107663657 107667381 + Mirg lincRNA lincRNA MGP_AJ_T0006496.1 MGP_AJ_G0005396.1 mouse_genomes_project 12 107669679 107675127 + Mirg lincRNA lincRNA MGP_AJ_T0006497.1 MGP_AJ_G0005396.1 mouse_genomes_project 12 107673563 107675124 + Mirg lincRNA lincRNA MGP_AJ_T0006498.1 MGP_AJ_G0005396.1 mouse_genomes_project 12 107673624 107675127 + Mirg lincRNA lincRNA MGP_AJ_T0100691.1 MGP_AJ_G0038657.1 mouse_genomes_project 12 107569712 107569786 + snoRNA snoRNA MGP_AJ_T0003400.1 MGP_AJ_G0003119.1 mouse_genomes_project 12 68132134 68155841 - 3110056K07Rik antisense antisense MGP_AJ_T0003401.1 MGP_AJ_G0003119.1 mouse_genomes_project 12 68150042 68156077 - 3110056K07Rik antisense antisense MGP_AJ_T0034395.1 MGP_AJ_G0019570.1 mouse_genomes_project 12 9842496 9848316 - MGP_AJ_P0034395 Mycn protein_coding protein_coding MGP_AJ_T0034396.1 MGP_AJ_G0019570.1 mouse_genomes_project 12 9842496 9847020 - MGP_AJ_P0034396 Mycn protein_coding protein_coding MGP_AJ_T0034397.1 MGP_AJ_G0019570.1 mouse_genomes_project 12 9847347 9848227 - Mycn protein_coding processed_transcript MGP_AJ_T0100685.1 MGP_AJ_G0038651.1 mouse_genomes_project 12 107553856 107553931 + Gm24564 snoRNA snoRNA MGP_AJ_T0099422.1 MGP_AJ_G0037388.1 mouse_genomes_project 12 74624786 74624946 + Gm25926 snRNA snRNA MGP_AJ_T0009790.1 MGP_AJ_G0007912.1 mouse_genomes_project 12 34156182 34156283 - Gm44326 miRNA miRNA MGP_AJ_T0035956.1 MGP_AJ_G0020097.1 mouse_genomes_project 12 109784976 109835064 + MGP_AJ_P0035956 Klc1 protein_coding protein_coding MGP_AJ_T0035957.1 MGP_AJ_G0020097.1 mouse_genomes_project 12 109785083 109823035 + MGP_AJ_P0035957 Klc1 protein_coding protein_coding MGP_AJ_T0035958.1 MGP_AJ_G0020097.1 mouse_genomes_project 12 109785140 109835016 + MGP_AJ_P0035958 Klc1 protein_coding protein_coding MGP_AJ_T0035959.1 MGP_AJ_G0020097.1 mouse_genomes_project 12 109798948 109823033 + MGP_AJ_P0035959 Klc1 protein_coding protein_coding MGP_AJ_T0035960.1 MGP_AJ_G0020097.1 mouse_genomes_project 12 109808630 109836135 + MGP_AJ_P0035960 Klc1 protein_coding protein_coding MGP_AJ_T0035961.1 MGP_AJ_G0020097.1 mouse_genomes_project 12 109813283 109815826 + Klc1 protein_coding retained_intron MGP_AJ_T0035962.1 MGP_AJ_G0020097.1 mouse_genomes_project 12 109817369 109822536 + Klc1 protein_coding processed_transcript MGP_AJ_T0035963.1 MGP_AJ_G0020097.1 mouse_genomes_project 12 109823491 109835015 + Klc1 protein_coding retained_intron MGP_AJ_T0035969.1 MGP_AJ_G0020097.1 mouse_genomes_project 12 109833795 109835000 + Klc1 protein_coding retained_intron MGP_AJ_T0035653.1 MGP_AJ_G0019984.1 mouse_genomes_project 12 99606268 99636189 + MGP_AJ_P0035653 Cpsf2 protein_coding protein_coding MGP_AJ_T0003398.1 MGP_AJ_G0003118.1 mouse_genomes_project 12 66912314 66916529 + 4930512B01Rik antisense antisense MGP_AJ_T0003399.1 MGP_AJ_G0003118.1 mouse_genomes_project 12 66912361 66962366 + 4930512B01Rik antisense antisense MGP_AJ_T0034759.1 MGP_AJ_G0019704.1 mouse_genomes_project 12 52112760 52130326 - MGP_AJ_P0034759 2700097O09Rik protein_coding protein_coding MGP_AJ_T0034760.1 MGP_AJ_G0019704.1 mouse_genomes_project 12 52112775 52121342 - 2700097O09Rik protein_coding retained_intron MGP_AJ_T0034761.1 MGP_AJ_G0019704.1 mouse_genomes_project 12 52120994 52130326 - 2700097O09Rik protein_coding retained_intron MGP_AJ_T0009797.1 MGP_AJ_G0007919.1 mouse_genomes_project 12 66267288 66267368 + miRNA miRNA MGP_AJ_T0000073.1 MGP_AJ_G0000059.1 mouse_genomes_project 12 112237042 112237428 - MGP_AJ_P0000073 IG_V_gene IG_V_gene MGP_AJ_T0036015.1 MGP_AJ_G0020115.1 mouse_genomes_project 12 110790963 110800155 + MGP_AJ_P0036015 Pld4 protein_coding protein_coding MGP_AJ_T0034783.1 MGP_AJ_G0019716.1 mouse_genomes_project 12 53783889 53807350 + MGP_AJ_P0034783 Pax9 protein_coding protein_coding MGP_AJ_T0034784.1 MGP_AJ_G0019716.1 mouse_genomes_project 12 53787766 53807465 + MGP_AJ_P0034784 Pax9 protein_coding protein_coding MGP_AJ_T0034785.1 MGP_AJ_G0019716.1 mouse_genomes_project 12 53787856 53804682 + Pax9 protein_coding retained_intron MGP_AJ_T0035401.1 MGP_AJ_G0019918.1 mouse_genomes_project 12 82976419 82979796 + MGP_AJ_P0035401 Fos protein_coding protein_coding MGP_AJ_T0035402.1 MGP_AJ_G0019918.1 mouse_genomes_project 12 82977220 82978708 + Fos protein_coding processed_transcript MGP_AJ_T0035403.1 MGP_AJ_G0019918.1 mouse_genomes_project 12 82977220 82978530 + Fos protein_coding processed_transcript MGP_AJ_T0035404.1 MGP_AJ_G0019918.1 mouse_genomes_project 12 82977440 82978586 + Fos protein_coding processed_transcript MGP_AJ_T0011330.1 MGP_AJ_G0009452.1 mouse_genomes_project 12 68070321 68070631 + Gm24857 misc_RNA misc_RNA MGP_AJ_T0035681.1 MGP_AJ_G0019996.1 mouse_genomes_project 12 100397358 100417081 + MGP_AJ_P0035681 Ubr7 protein_coding protein_coding MGP_AJ_T0035052.1 MGP_AJ_G0019808.1 mouse_genomes_project 12 72913936 72936406 - MGP_AJ_P0035052 Sgpp1 protein_coding protein_coding MGP_AJ_T0006414.1 MGP_AJ_G0005344.1 mouse_genomes_project 12 49614411 49616762 - 1700031P21Rik lincRNA lincRNA MGP_AJ_T0006415.1 MGP_AJ_G0005344.1 mouse_genomes_project 12 49616021 49616758 - 1700031P21Rik lincRNA lincRNA MGP_AJ_T0006416.1 MGP_AJ_G0005344.1 mouse_genomes_project 12 49616039 49616759 - 1700031P21Rik lincRNA lincRNA MGP_AJ_T0035132.1 MGP_AJ_G0019835.1 mouse_genomes_project 12 76457078 76508567 + MGP_AJ_P0035132 Plekhh1 protein_coding protein_coding MGP_AJ_T0036089.1 MGP_AJ_G0020142.1 mouse_genomes_project 12 116362466 116686079 - MGP_AJ_P0036089 Dnah11 protein_coding protein_coding MGP_AJ_T0036090.1 MGP_AJ_G0020142.1 mouse_genomes_project 12 116362466 116547710 - MGP_AJ_P0036090 Dnah11 protein_coding nonsense_mediated_decay MGP_AJ_T0036091.1 MGP_AJ_G0020142.1 mouse_genomes_project 12 116386605 116399200 - Dnah11 protein_coding retained_intron MGP_AJ_T0036092.1 MGP_AJ_G0020142.1 mouse_genomes_project 12 116386621 116399429 - Dnah11 protein_coding processed_transcript MGP_AJ_T0034589.1 MGP_AJ_G0019637.1 mouse_genomes_project 12 29509718 29513954 + MGP_AJ_P0034589 Ccdc71l protein_coding protein_coding MGP_AJ_T0034670.1 MGP_AJ_G0019667.1 mouse_genomes_project 12 37323250 37345503 - MGP_AJ_P0034670 Lsmem1 protein_coding protein_coding MGP_AJ_T0003397.1 MGP_AJ_G0003117.1 mouse_genomes_project 12 66382918 66389616 - Gm15561 antisense antisense MGP_AJ_T0034386.1 MGP_AJ_G0019563.1 mouse_genomes_project 12 7976834 8039683 - MGP_AJ_P0034386 Kcns3 protein_coding protein_coding MGP_AJ_T0034387.1 MGP_AJ_G0019563.1 mouse_genomes_project 12 7976834 8039214 - MGP_AJ_P0034387 Kcns3 protein_coding protein_coding MGP_AJ_T0100641.1 MGP_AJ_G0038607.1 mouse_genomes_project 12 10072908 10073043 - Gm24208 snoRNA snoRNA MGP_AJ_T0006403.1 MGP_AJ_G0005335.1 mouse_genomes_project 12 27591676 27596218 - Gm28806 lincRNA lincRNA MGP_AJ_T0003384.1 MGP_AJ_G0003106.1 mouse_genomes_project 12 27180644 27183109 + Gm15691 antisense antisense MGP_AJ_T0036065.1 MGP_AJ_G0020133.1 mouse_genomes_project 12 111549131 111551784 + MGP_AJ_P0036065 protein_coding protein_coding MGP_AJ_T0034511.1 MGP_AJ_G0019612.1 mouse_genomes_project 12 25799348 25806892 + MGP_AJ_P0034511 Adi1 protein_coding protein_coding MGP_AJ_T0034512.1 MGP_AJ_G0019612.1 mouse_genomes_project 12 25799601 25806446 + MGP_AJ_P0034512 Adi1 protein_coding protein_coding MGP_AJ_T0034513.1 MGP_AJ_G0019612.1 mouse_genomes_project 12 25801635 25803538 + Adi1 protein_coding processed_transcript MGP_AJ_T0034716.1 MGP_AJ_G0019684.1 mouse_genomes_project 12 48371737 48400661 + MGP_AJ_P0034716 G2e3 protein_coding protein_coding MGP_AJ_T0034717.1 MGP_AJ_G0019684.1 mouse_genomes_project 12 48371964 48396942 + MGP_AJ_P0034717 G2e3 protein_coding protein_coding MGP_AJ_T0034718.1 MGP_AJ_G0019684.1 mouse_genomes_project 12 48372048 48397045 + MGP_AJ_P0034718 G2e3 protein_coding protein_coding MGP_AJ_T0034719.1 MGP_AJ_G0019684.1 mouse_genomes_project 12 48380823 48387208 + G2e3 protein_coding retained_intron MGP_AJ_T0034720.1 MGP_AJ_G0019684.1 mouse_genomes_project 12 48394349 48397752 + G2e3 protein_coding retained_intron MGP_AJ_T0006389.1 MGP_AJ_G0005324.1 mouse_genomes_project 12 5672065 5679064 - Gm4755 lincRNA lincRNA MGP_AJ_T0035765.1 MGP_AJ_G0020029.1 mouse_genomes_project 12 102100749 102154956 + MGP_AJ_P0035765 Serpina3m protein_coding protein_coding MGP_AJ_T0035766.1 MGP_AJ_G0020029.1 mouse_genomes_project 12 102147863 102154957 + MGP_AJ_P0035766 Serpina3m protein_coding protein_coding MGP_AJ_T0035088.1 MGP_AJ_G0019818.1 mouse_genomes_project 12 73650163 73656940 + MGP_AJ_P0035088 Gm10451 protein_coding protein_coding MGP_AJ_T0009811.1 MGP_AJ_G0007933.1 mouse_genomes_project 12 84580384 84580484 + Gm25847 miRNA miRNA MGP_AJ_T0009885.1 MGP_AJ_G0008007.1 mouse_genomes_project 12 107664310 107664376 + Mir154 miRNA miRNA MGP_AJ_T0006471.1 MGP_AJ_G0005390.1 mouse_genomes_project 12 106471436 106490739 - Gm16596 lincRNA lincRNA MGP_AJ_T0098550.1 MGP_AJ_G0036534.1 mouse_genomes_project 12 1234407 1234521 + Gm23756 rRNA rRNA MGP_AJ_T0009806.1 MGP_AJ_G0007928.1 mouse_genomes_project 12 74323283 74323351 - Gm22696 miRNA miRNA MGP_AJ_T0034923.1 MGP_AJ_G0019763.1 mouse_genomes_project 12 67090838 67112749 - MGP_AJ_P0034923 Sav1 protein_coding protein_coding MGP_AJ_T0009829.1 MGP_AJ_G0007951.1 mouse_genomes_project 12 107466978 107467058 + Mir1906-2 miRNA miRNA MGP_AJ_T0035292.1 MGP_AJ_G0019885.1 mouse_genomes_project 12 81591775 81617241 + Dnal1 protein_coding processed_transcript MGP_AJ_T0035293.1 MGP_AJ_G0019885.1 mouse_genomes_project 12 81591775 81620920 + MGP_AJ_P0035293 Dnal1 protein_coding protein_coding MGP_AJ_T0035294.1 MGP_AJ_G0019885.1 mouse_genomes_project 12 81591780 81615860 + MGP_AJ_P0035294 Dnal1 protein_coding protein_coding MGP_AJ_T0035295.1 MGP_AJ_G0019885.1 mouse_genomes_project 12 81591799 81618198 + MGP_AJ_P0035295 Dnal1 protein_coding nonsense_mediated_decay MGP_AJ_T0035296.1 MGP_AJ_G0019885.1 mouse_genomes_project 12 81591800 81611376 + MGP_AJ_P0035296 Dnal1 protein_coding protein_coding MGP_AJ_T0035297.1 MGP_AJ_G0019885.1 mouse_genomes_project 12 81604297 81624901 + Dnal1 protein_coding retained_intron MGP_AJ_T0035298.1 MGP_AJ_G0019885.1 mouse_genomes_project 12 81613066 81614506 + MGP_AJ_P0035298 Dnal1 protein_coding protein_coding MGP_AJ_T0006388.1 MGP_AJ_G0005323.1 mouse_genomes_project 12 4270991 4279221 - 1700101O22Rik lincRNA lincRNA MGP_AJ_T0012866.1 MGP_AJ_G0010961.1 mouse_genomes_project 12 112396502 112396814 - processed_pseudogene processed_pseudogene MGP_AJ_T0000255.1 MGP_AJ_G0000199.1 mouse_genomes_project 12 112811771 112812203 - IG_V_pseudogene IG_V_pseudogene MGP_AJ_T0035300.1 MGP_AJ_G0019887.1 mouse_genomes_project 12 81626578 81697826 - MGP_AJ_P0035300 Elmsan1 protein_coding protein_coding MGP_AJ_T0035301.1 MGP_AJ_G0019887.1 mouse_genomes_project 12 81626680 81672031 - MGP_AJ_P0035301 Elmsan1 protein_coding protein_coding MGP_AJ_T0035302.1 MGP_AJ_G0019887.1 mouse_genomes_project 12 81630347 81633264 - Elmsan1 protein_coding processed_transcript MGP_AJ_T0035303.1 MGP_AJ_G0019887.1 mouse_genomes_project 12 81634559 81638169 - Elmsan1 protein_coding processed_transcript MGP_AJ_T0035217.1 MGP_AJ_G0019868.1 mouse_genomes_project 12 80027961 80483868 + MGP_AJ_P0035217 Rgs6 protein_coding protein_coding MGP_AJ_T0035218.1 MGP_AJ_G0019868.1 mouse_genomes_project 12 80056867 80596718 + MGP_AJ_P0035218 Rgs6 protein_coding protein_coding MGP_AJ_T0035219.1 MGP_AJ_G0019868.1 mouse_genomes_project 12 80057156 80530407 + MGP_AJ_P0035219 Rgs6 protein_coding protein_coding MGP_AJ_T0035220.1 MGP_AJ_G0019868.1 mouse_genomes_project 12 80057176 80596987 + MGP_AJ_P0035220 Rgs6 protein_coding protein_coding MGP_AJ_T0035221.1 MGP_AJ_G0019868.1 mouse_genomes_project 12 80057269 80597559 + MGP_AJ_P0035221 Rgs6 protein_coding protein_coding MGP_AJ_T0035222.1 MGP_AJ_G0019868.1 mouse_genomes_project 12 80057731 80598115 + MGP_AJ_P0035222 Rgs6 protein_coding protein_coding MGP_AJ_T0035223.1 MGP_AJ_G0019868.1 mouse_genomes_project 12 80057731 80600803 + MGP_AJ_P0035223 Rgs6 protein_coding protein_coding MGP_AJ_T0035224.1 MGP_AJ_G0019868.1 mouse_genomes_project 12 80057804 80597093 + MGP_AJ_P0035224 Rgs6 protein_coding nonsense_mediated_decay MGP_AJ_T0035225.1 MGP_AJ_G0019868.1 mouse_genomes_project 12 80057819 80502439 + MGP_AJ_P0035225 Rgs6 protein_coding protein_coding MGP_AJ_T0035226.1 MGP_AJ_G0019868.1 mouse_genomes_project 12 80057867 80487677 + MGP_AJ_P0035226 Rgs6 protein_coding protein_coding MGP_AJ_T0035227.1 MGP_AJ_G0019868.1 mouse_genomes_project 12 80057886 80596840 + MGP_AJ_P0035227 Rgs6 protein_coding protein_coding MGP_AJ_T0035228.1 MGP_AJ_G0019868.1 mouse_genomes_project 12 80058081 80487615 + MGP_AJ_P0035228 Rgs6 protein_coding protein_coding MGP_AJ_T0035229.1 MGP_AJ_G0019868.1 mouse_genomes_project 12 80058257 80059238 + Rgs6 protein_coding retained_intron MGP_AJ_T0035230.1 MGP_AJ_G0019868.1 mouse_genomes_project 12 80086430 80576361 + MGP_AJ_P0035230 Rgs6 protein_coding protein_coding MGP_AJ_T0035231.1 MGP_AJ_G0019868.1 mouse_genomes_project 12 80086430 80576238 + MGP_AJ_P0035231 Rgs6 protein_coding protein_coding MGP_AJ_T0035232.1 MGP_AJ_G0019868.1 mouse_genomes_project 12 80086430 80596718 + MGP_AJ_P0035232 Rgs6 protein_coding protein_coding MGP_AJ_T0035233.1 MGP_AJ_G0019868.1 mouse_genomes_project 12 80086430 80576238 + MGP_AJ_P0035233 Rgs6 protein_coding protein_coding MGP_AJ_T0035234.1 MGP_AJ_G0019868.1 mouse_genomes_project 12 80086430 80572318 + MGP_AJ_P0035234 Rgs6 protein_coding protein_coding MGP_AJ_T0035235.1 MGP_AJ_G0019868.1 mouse_genomes_project 12 80086430 80596718 + MGP_AJ_P0035235 Rgs6 protein_coding protein_coding MGP_AJ_T0035236.1 MGP_AJ_G0019868.1 mouse_genomes_project 12 80483265 80484396 + Rgs6 protein_coding retained_intron MGP_AJ_T0035237.1 MGP_AJ_G0019868.1 mouse_genomes_project 12 80544547 80596954 + MGP_AJ_P0035237 Rgs6 protein_coding protein_coding MGP_AJ_T0009853.1 MGP_AJ_G0007975.1 mouse_genomes_project 12 107636510 107636573 + Mir299a miRNA miRNA MGP_AJ_T0034501.1 MGP_AJ_G0019605.1 mouse_genomes_project 12 23572906 23584234 + MGP_AJ_P0034501 Cmpk2 protein_coding protein_coding MGP_AJ_T0035205.1 MGP_AJ_G0019861.1 mouse_genomes_project 12 79034490 79043053 - MGP_AJ_P0035205 Adam21 protein_coding protein_coding MGP_AJ_T0034460.1 MGP_AJ_G0019592.1 mouse_genomes_project 12 18168072 18219892 - MGP_AJ_P0034460 Adam17 protein_coding protein_coding MGP_AJ_T0034461.1 MGP_AJ_G0019592.1 mouse_genomes_project 12 18168080 18219931 - MGP_AJ_P0034461 Adam17 protein_coding protein_coding MGP_AJ_T0034462.1 MGP_AJ_G0019592.1 mouse_genomes_project 12 18168080 18219892 - MGP_AJ_P0034462 Adam17 protein_coding nonsense_mediated_decay MGP_AJ_T0034463.1 MGP_AJ_G0019592.1 mouse_genomes_project 12 18168080 18219892 - MGP_AJ_P0034463 Adam17 protein_coding nonsense_mediated_decay MGP_AJ_T0034464.1 MGP_AJ_G0019592.1 mouse_genomes_project 12 18170074 18174611 - Adam17 protein_coding processed_transcript MGP_AJ_T0034465.1 MGP_AJ_G0019592.1 mouse_genomes_project 12 18172542 18190029 - Adam17 protein_coding retained_intron MGP_AJ_T0034466.1 MGP_AJ_G0019592.1 mouse_genomes_project 12 18175393 18177863 - Adam17 protein_coding retained_intron MGP_AJ_T0034467.1 MGP_AJ_G0019592.1 mouse_genomes_project 12 18195783 18219833 - MGP_AJ_P0034467 Adam17 protein_coding nonsense_mediated_decay MGP_AJ_T0035924.1 MGP_AJ_G0020085.1 mouse_genomes_project 12 109283752 109289049 + MGP_AJ_P0035924 Amn protein_coding protein_coding MGP_AJ_T0034712.1 MGP_AJ_G0019681.1 mouse_genomes_project 12 46405213 46414163 + MGP_AJ_P0034712 Gm43517 protein_coding protein_coding MGP_AJ_T0012834.1 MGP_AJ_G0010929.1 mouse_genomes_project 12 76593098 76593446 + processed_pseudogene processed_pseudogene MGP_AJ_T0035654.1 MGP_AJ_G0019985.1 mouse_genomes_project 12 99755149 99899274 + MGP_AJ_P0035654 Slc24a4 protein_coding protein_coding MGP_AJ_T0035655.1 MGP_AJ_G0019985.1 mouse_genomes_project 12 99755590 99898932 + MGP_AJ_P0035655 Slc24a4 protein_coding protein_coding MGP_AJ_T0035656.1 MGP_AJ_G0019985.1 mouse_genomes_project 12 99755806 99898680 + MGP_AJ_P0035656 Slc24a4 protein_coding protein_coding MGP_AJ_T0000266.1 MGP_AJ_G0000210.1 mouse_genomes_project 12 114375071 114375327 - IG_V_pseudogene IG_V_pseudogene MGP_AJ_T0012852.1 MGP_AJ_G0010947.1 mouse_genomes_project 12 99534982 99535442 + processed_pseudogene processed_pseudogene MGP_AJ_T0000056.1 MGP_AJ_G0000044.1 mouse_genomes_project 12 112811771 112812065 + MGP_AJ_P0000056 Ighv1-13 IG_LV_gene IG_LV_gene MGP_AJ_T0012837.1 MGP_AJ_G0010932.1 mouse_genomes_project 12 79062353 79062789 - processed_pseudogene processed_pseudogene MGP_AJ_T0000242.1 MGP_AJ_G0000186.1 mouse_genomes_project 12 112216808 112217104 - IG_V_pseudogene IG_V_pseudogene MGP_AJ_T0006435.1 MGP_AJ_G0005359.1 mouse_genomes_project 12 81504944 81519249 - 4732463B04Rik lincRNA lincRNA MGP_AJ_T0034641.1 MGP_AJ_G0019660.1 mouse_genomes_project 12 33529567 33836146 + MGP_AJ_P0034641 Ispd protein_coding protein_coding MGP_AJ_T0100669.1 MGP_AJ_G0038635.1 mouse_genomes_project 12 62670815 62670947 - Gm23948 snoRNA snoRNA MGP_AJ_T0009907.1 MGP_AJ_G0008029.1 mouse_genomes_project 12 114756561 114756617 - Gm23190 miRNA miRNA MGP_AJ_T0035973.1 MGP_AJ_G0020099.1 mouse_genomes_project 12 109842393 109858343 + MGP_AJ_P0035973 Zfyve21 protein_coding protein_coding MGP_AJ_T0035158.1 MGP_AJ_G0019848.1 mouse_genomes_project 12 78074088 78084483 - MGP_AJ_P0035158 protein_coding protein_coding MGP_AJ_T0035159.1 MGP_AJ_G0019848.1 mouse_genomes_project 12 78074423 78083974 - MGP_AJ_P0035159 protein_coding protein_coding MGP_AJ_T0009789.1 MGP_AJ_G0007911.1 mouse_genomes_project 12 33968992 33969066 + Mir5099 miRNA miRNA MGP_AJ_T0035816.1 MGP_AJ_G0020051.1 mouse_genomes_project 12 103888067 103957323 + MGP_AJ_P0035816 Vrk1 protein_coding protein_coding MGP_AJ_T0035817.1 MGP_AJ_G0020051.1 mouse_genomes_project 12 103889065 103957152 + MGP_AJ_P0035817 Vrk1 protein_coding protein_coding MGP_AJ_T0035349.1 MGP_AJ_G0019900.1 mouse_genomes_project 12 82174595 82196104 - MGP_AJ_P0035349 Syndig1l protein_coding protein_coding MGP_AJ_T0011324.1 MGP_AJ_G0009446.1 mouse_genomes_project 12 43851376 43851625 - Gm25051 misc_RNA misc_RNA MGP_AJ_T0035751.1 MGP_AJ_G0020020.1 mouse_genomes_project 12 101866967 101871992 + MGP_AJ_P0035751 Serpina5 protein_coding protein_coding MGP_AJ_T0035135.1 MGP_AJ_G0019838.1 mouse_genomes_project 12 76580640 76597271 - MGP_AJ_P0035135 Vti1b protein_coding protein_coding MGP_AJ_T0035136.1 MGP_AJ_G0019838.1 mouse_genomes_project 12 76580793 76597052 - MGP_AJ_P0035136 Vti1b protein_coding nonsense_mediated_decay MGP_AJ_T0035137.1 MGP_AJ_G0019838.1 mouse_genomes_project 12 76580952 76589752 - MGP_AJ_P0035137 Vti1b protein_coding protein_coding MGP_AJ_T0035138.1 MGP_AJ_G0019838.1 mouse_genomes_project 12 76581140 76590981 - MGP_AJ_P0035138 Vti1b protein_coding nonsense_mediated_decay MGP_AJ_T0003417.1 MGP_AJ_G0003134.1 mouse_genomes_project 12 99754156 99756323 - Gm16339 antisense antisense MGP_AJ_T0000006.1 MGP_AJ_G0000004.1 mouse_genomes_project 12 111298039 111300114 - MGP_AJ_P0000006 Ighe IG_C_gene IG_C_gene MGP_AJ_T0100644.1 MGP_AJ_G0038610.1 mouse_genomes_project 12 18131914 18132047 + Gm25821 snoRNA snoRNA MGP_AJ_T0035313.1 MGP_AJ_G0019889.1 mouse_genomes_project 12 81795405 81826446 + MGP_AJ_P0035313 Zfp410 protein_coding protein_coding MGP_AJ_T0012867.1 MGP_AJ_G0010962.1 mouse_genomes_project 12 112464474 112465125 - processed_pseudogene processed_pseudogene MGP_AJ_T0035790.1 MGP_AJ_G0020046.1 mouse_genomes_project 12 103468964 103471219 + MGP_AJ_P0035790 Bdkrb1 protein_coding protein_coding MGP_AJ_T0035791.1 MGP_AJ_G0020046.1 mouse_genomes_project 12 103468998 103470862 + MGP_AJ_P0035791 Bdkrb1 protein_coding protein_coding MGP_AJ_T0035792.1 MGP_AJ_G0020046.1 mouse_genomes_project 12 103469970 103471308 + MGP_AJ_P0035792 Bdkrb1 protein_coding protein_coding MGP_AJ_T0000856.1 MGP_AJ_G0000791.1 mouse_genomes_project 12 53704033 53704897 - TEC TEC MGP_AJ_T0035091.1 MGP_AJ_G0019820.1 mouse_genomes_project 12 73789823 73918736 - MGP_AJ_P0035091 Sptb protein_coding protein_coding MGP_AJ_T0035092.1 MGP_AJ_G0019820.1 mouse_genomes_project 12 73792566 73793422 - Sptb protein_coding retained_intron MGP_AJ_T0035093.1 MGP_AJ_G0019820.1 mouse_genomes_project 12 73805437 73918212 - MGP_AJ_P0035093 Sptb protein_coding protein_coding MGP_AJ_T0100672.1 MGP_AJ_G0038638.1 mouse_genomes_project 12 70304167 70304299 - Gm23910 snoRNA snoRNA MGP_AJ_T0034642.1 MGP_AJ_G0019661.1 mouse_genomes_project 12 34259205 34320161 + MGP_AJ_P0034642 Meox2 protein_coding protein_coding MGP_AJ_T0100671.1 MGP_AJ_G0038637.1 mouse_genomes_project 12 63676480 63676599 - Gm23826 snoRNA snoRNA MGP_AJ_T0035793.1 MGP_AJ_G0020047.1 mouse_genomes_project 12 103479415 103551735 - MGP_AJ_P0035793 Atg2b protein_coding protein_coding MGP_AJ_T0035794.1 MGP_AJ_G0020047.1 mouse_genomes_project 12 103479420 103551324 - MGP_AJ_P0035794 Atg2b protein_coding unknown_likely_coding MGP_AJ_T0034536.1 MGP_AJ_G0019619.1 mouse_genomes_project 12 27706910 27713660 + MGP_AJ_P0034536 Tmem18 protein_coding protein_coding MGP_AJ_T0034340.1 MGP_AJ_G0019547.1 mouse_genomes_project 12 1957124 2255000 - MGP_AJ_P0034340 Klhl29 protein_coding protein_coding MGP_AJ_T0000076.1 MGP_AJ_G0000062.1 mouse_genomes_project 12 112351621 112367682 - MGP_AJ_P0000076 IG_V_gene IG_V_gene MGP_AJ_T0034935.1 MGP_AJ_G0019766.1 mouse_genomes_project 12 67321235 67356611 - MGP_AJ_P0034935 Pygl protein_coding protein_coding MGP_AJ_T0034936.1 MGP_AJ_G0019766.1 mouse_genomes_project 12 67327870 67328313 - Pygl protein_coding processed_transcript MGP_AJ_T0034937.1 MGP_AJ_G0019766.1 mouse_genomes_project 12 67342051 67356640 - Pygl protein_coding retained_intron MGP_AJ_T0034938.1 MGP_AJ_G0019766.1 mouse_genomes_project 12 67345606 67356373 - Pygl protein_coding processed_transcript MGP_AJ_T0000263.1 MGP_AJ_G0000207.1 mouse_genomes_project 12 113960029 113960463 - IG_V_pseudogene IG_V_pseudogene MGP_AJ_T0035452.1 MGP_AJ_G0019931.1 mouse_genomes_project 12 84423136 84427308 - MGP_AJ_P0035452 Irf2bpl protein_coding protein_coding MGP_AJ_T0034849.1 MGP_AJ_G0019732.1 mouse_genomes_project 12 59803593 59804016 + MGP_AJ_P0034849 Spanxn4 protein_coding protein_coding MGP_AJ_T0034566.1 MGP_AJ_G0019629.1 mouse_genomes_project 12 28637264 28679399 - MGP_AJ_P0034566 Slc26a4 protein_coding protein_coding MGP_AJ_T0034729.1 MGP_AJ_G0019690.1 mouse_genomes_project 12 48904581 49005802 - MGP_AJ_P0034729 Heatr5a protein_coding protein_coding MGP_AJ_T0099437.1 MGP_AJ_G0037403.1 mouse_genomes_project 12 114986415 114986479 - Gm27649 snRNA snRNA MGP_AJ_T0017311.1 MGP_AJ_G0015212.1 mouse_genomes_project 12 99542817 99544913 + Gm20036 processed_transcript processed_transcript MGP_AJ_T0034897.1 MGP_AJ_G0019753.1 mouse_genomes_project 12 66491982 66492606 - MGP_AJ_P0034897 Gm9887 protein_coding protein_coding MGP_AJ_T0035610.1 MGP_AJ_G0019972.1 mouse_genomes_project 12 97844542 97854913 + MGP_AJ_P0035610 Calm1 protein_coding protein_coding MGP_AJ_T0035611.1 MGP_AJ_G0019972.1 mouse_genomes_project 12 97844636 97849045 + Calm1 protein_coding retained_intron MGP_AJ_T0035612.1 MGP_AJ_G0019972.1 mouse_genomes_project 12 97845251 97854913 + MGP_AJ_P0035612 Calm1 protein_coding protein_coding MGP_AJ_T0035613.1 MGP_AJ_G0019972.1 mouse_genomes_project 12 97850510 97851603 + Calm1 protein_coding retained_intron MGP_AJ_T0009906.1 MGP_AJ_G0008028.1 mouse_genomes_project 12 114667386 114667513 - Gm44372 miRNA miRNA MGP_AJ_T0006434.1 MGP_AJ_G0005358.1 mouse_genomes_project 12 81076653 81078068 + Gm26623 lincRNA lincRNA MGP_AJ_T0003418.1 MGP_AJ_G0003135.1 mouse_genomes_project 12 100251912 100257749 + Gm20069 antisense antisense MGP_AJ_T0035748.1 MGP_AJ_G0020018.1 mouse_genomes_project 12 101757025 101775830 - MGP_AJ_P0035748 Serpina9 protein_coding protein_coding MGP_AJ_T0035749.1 MGP_AJ_G0020018.1 mouse_genomes_project 12 101770479 101775933 - MGP_AJ_P0035749 Serpina9 protein_coding protein_coding MGP_AJ_T0035346.1 MGP_AJ_G0019899.1 mouse_genomes_project 12 82135289 82146339 + MGP_AJ_P0035346 Vrtn protein_coding protein_coding MGP_AJ_T0035347.1 MGP_AJ_G0019899.1 mouse_genomes_project 12 82136825 82146339 + MGP_AJ_P0035347 Vrtn protein_coding protein_coding MGP_AJ_T0035348.1 MGP_AJ_G0019899.1 mouse_genomes_project 12 82137166 82146339 + MGP_AJ_P0035348 Vrtn protein_coding protein_coding MGP_AJ_T0035011.1 MGP_AJ_G0019789.1 mouse_genomes_project 12 70097915 70102914 + MGP_AJ_P0035011 Six6 protein_coding protein_coding MGP_AJ_T0036094.1 MGP_AJ_G0020144.1 mouse_genomes_project 12 117317982 117324233 + MGP_AJ_P0036094 Sp8 protein_coding protein_coding MGP_AJ_T0034821.1 MGP_AJ_G0019729.1 mouse_genomes_project 12 56204917 56270223 + MGP_AJ_P0034821 Ctage5 protein_coding protein_coding MGP_AJ_T0034822.1 MGP_AJ_G0019729.1 mouse_genomes_project 12 56204943 56270220 + MGP_AJ_P0034822 Ctage5 protein_coding protein_coding MGP_AJ_T0034823.1 MGP_AJ_G0019729.1 mouse_genomes_project 12 56204960 56270223 + MGP_AJ_P0034823 Ctage5 protein_coding protein_coding MGP_AJ_T0034824.1 MGP_AJ_G0019729.1 mouse_genomes_project 12 56204962 56229767 + MGP_AJ_P0034824 Ctage5 protein_coding protein_coding MGP_AJ_T0034825.1 MGP_AJ_G0019729.1 mouse_genomes_project 12 56204982 56270269 + MGP_AJ_P0034825 Ctage5 protein_coding nonsense_mediated_decay MGP_AJ_T0034826.1 MGP_AJ_G0019729.1 mouse_genomes_project 12 56205007 56249169 + MGP_AJ_P0034826 Ctage5 protein_coding nonsense_mediated_decay MGP_AJ_T0034827.1 MGP_AJ_G0019729.1 mouse_genomes_project 12 56206219 56227095 + MGP_AJ_P0034827 Ctage5 protein_coding protein_coding MGP_AJ_T0034828.1 MGP_AJ_G0019729.1 mouse_genomes_project 12 56206483 56271621 + MGP_AJ_P0034828 Ctage5 protein_coding protein_coding MGP_AJ_T0034829.1 MGP_AJ_G0019729.1 mouse_genomes_project 12 56206650 56270220 + MGP_AJ_P0034829 Ctage5 protein_coding protein_coding MGP_AJ_T0034830.1 MGP_AJ_G0019729.1 mouse_genomes_project 12 56206678 56225198 + Ctage5 protein_coding retained_intron MGP_AJ_T0034831.1 MGP_AJ_G0019729.1 mouse_genomes_project 12 56206683 56270228 + MGP_AJ_P0034831 Ctage5 protein_coding protein_coding MGP_AJ_T0034832.1 MGP_AJ_G0019729.1 mouse_genomes_project 12 56206699 56270269 + MGP_AJ_P0034832 Ctage5 protein_coding protein_coding MGP_AJ_T0034833.1 MGP_AJ_G0019729.1 mouse_genomes_project 12 56211295 56269999 + MGP_AJ_P0034833 Ctage5 protein_coding nonsense_mediated_decay MGP_AJ_T0034834.1 MGP_AJ_G0019729.1 mouse_genomes_project 12 56229739 56269999 + MGP_AJ_P0034834 Ctage5 protein_coding nonsense_mediated_decay MGP_AJ_T0034835.1 MGP_AJ_G0019729.1 mouse_genomes_project 12 56243112 56264508 + MGP_AJ_P0034835 Ctage5 protein_coding nonsense_mediated_decay MGP_AJ_T0034836.1 MGP_AJ_G0019729.1 mouse_genomes_project 12 56247012 56255717 + Ctage5 protein_coding retained_intron MGP_AJ_T0034837.1 MGP_AJ_G0019729.1 mouse_genomes_project 12 56249082 56269687 + Ctage5 protein_coding retained_intron MGP_AJ_T0034838.1 MGP_AJ_G0019729.1 mouse_genomes_project 12 56249211 56251277 + Ctage5 protein_coding retained_intron MGP_AJ_T0034839.1 MGP_AJ_G0019729.1 mouse_genomes_project 12 56259724 56268566 + Ctage5 protein_coding retained_intron MGP_AJ_T0034529.1 MGP_AJ_G0019618.1 mouse_genomes_project 12 27284787 27482562 - MGP_AJ_P0034529 Sntg2 protein_coding nonsense_mediated_decay MGP_AJ_T0034530.1 MGP_AJ_G0019618.1 mouse_genomes_project 12 27284788 27482609 - MGP_AJ_P0034530 Sntg2 protein_coding protein_coding MGP_AJ_T0034531.1 MGP_AJ_G0019618.1 mouse_genomes_project 12 27285295 27482499 - MGP_AJ_P0034531 Sntg2 protein_coding nonsense_mediated_decay MGP_AJ_T0034532.1 MGP_AJ_G0019618.1 mouse_genomes_project 12 27285300 27482562 - MGP_AJ_P0034532 Sntg2 protein_coding nonsense_mediated_decay MGP_AJ_T0034533.1 MGP_AJ_G0019618.1 mouse_genomes_project 12 27299280 27305575 - Sntg2 protein_coding retained_intron MGP_AJ_T0034534.1 MGP_AJ_G0019618.1 mouse_genomes_project 12 27372143 27466569 - Sntg2 protein_coding processed_transcript MGP_AJ_T0034535.1 MGP_AJ_G0019618.1 mouse_genomes_project 12 27413824 27482577 - Sntg2 protein_coding processed_transcript MGP_AJ_T0034896.1 MGP_AJ_G0019752.1 mouse_genomes_project 12 66430195 66477320 - MGP_AJ_P0034896 Nemf protein_coding protein_coding MGP_AJ_T0035070.1 MGP_AJ_G0019810.1 mouse_genomes_project 12 73327847 73384976 - MGP_AJ_P0035070 Esr2 protein_coding protein_coding MGP_AJ_T0035071.1 MGP_AJ_G0019810.1 mouse_genomes_project 12 73327847 73374372 - MGP_AJ_P0035071 Esr2 protein_coding protein_coding MGP_AJ_T0035072.1 MGP_AJ_G0019810.1 mouse_genomes_project 12 73327847 73384976 - MGP_AJ_P0035072 Esr2 protein_coding nonsense_mediated_decay MGP_AJ_T0035073.1 MGP_AJ_G0019810.1 mouse_genomes_project 12 73327867 73384976 - MGP_AJ_P0035073 Esr2 protein_coding protein_coding MGP_AJ_T0035345.1 MGP_AJ_G0019898.1 mouse_genomes_project 12 82095049 82110667 - MGP_AJ_P0035345 Abcd4 protein_coding protein_coding MGP_AJ_T0009862.1 MGP_AJ_G0007984.1 mouse_genomes_project 12 107641450 107641524 + Mir679 miRNA miRNA MGP_AJ_T0009849.1 MGP_AJ_G0007971.1 mouse_genomes_project 12 107541125 107541204 + Mir370 miRNA miRNA MGP_AJ_T0098556.1 MGP_AJ_G0036540.1 mouse_genomes_project 12 26166635 26166750 - Gm23342 rRNA rRNA MGP_AJ_T0000065.1 MGP_AJ_G0000051.1 mouse_genomes_project 12 111956087 111956609 - MGP_AJ_P0000065 Ighv5-17 IG_V_gene IG_V_gene MGP_AJ_T0034976.1 MGP_AJ_G0019780.1 mouse_genomes_project 12 69224260 69233536 + MGP_AJ_P0034976 Jkamp protein_coding protein_coding MGP_AJ_T0034977.1 MGP_AJ_G0019780.1 mouse_genomes_project 12 69224460 69232684 + Jkamp protein_coding processed_transcript MGP_AJ_T0034978.1 MGP_AJ_G0019780.1 mouse_genomes_project 12 69224528 69240122 + MGP_AJ_P0034978 Jkamp protein_coding protein_coding MGP_AJ_T0034979.1 MGP_AJ_G0019780.1 mouse_genomes_project 12 69224528 69240730 + MGP_AJ_P0034979 Jkamp protein_coding protein_coding MGP_AJ_T0034980.1 MGP_AJ_G0019780.1 mouse_genomes_project 12 69227832 69233536 + Jkamp protein_coding retained_intron MGP_AJ_T0034981.1 MGP_AJ_G0019780.1 mouse_genomes_project 12 69228373 69233410 + Jkamp protein_coding retained_intron MGP_AJ_T0034982.1 MGP_AJ_G0019780.1 mouse_genomes_project 12 69239070 69240122 + Jkamp protein_coding retained_intron MGP_AJ_T0003422.1 MGP_AJ_G0003138.1 mouse_genomes_project 12 106976371 106976840 + Gm28498 antisense antisense MGP_AJ_T0036022.1 MGP_AJ_G0020120.1 mouse_genomes_project 12 110926297 110946557 - MGP_AJ_P0036022 Jag2 protein_coding protein_coding MGP_AJ_T0034910.1 MGP_AJ_G0019759.1 mouse_genomes_project 12 66869082 66913308 - MGP_AJ_P0034910 Cdkl1 protein_coding unknown_likely_coding MGP_AJ_T0012840.1 MGP_AJ_G0010935.1 mouse_genomes_project 12 81737684 81738422 - processed_pseudogene processed_pseudogene MGP_AJ_T0009792.1 MGP_AJ_G0007914.1 mouse_genomes_project 12 41256807 41256868 + Mir5627 miRNA miRNA MGP_AJ_T0098825.1 MGP_AJ_G0036809.1 mouse_genomes_project 12 102802268 102802543 - Scarna13 scaRNA scaRNA MGP_AJ_T0100663.1 MGP_AJ_G0038629.1 mouse_genomes_project 12 56209261 56209383 + Gm24233 snoRNA snoRNA MGP_AJ_T0009808.1 MGP_AJ_G0007930.1 mouse_genomes_project 12 78618026 78618110 + Mir3067 miRNA miRNA MGP_AJ_T0034684.1 MGP_AJ_G0019670.1 mouse_genomes_project 12 37461391 37587352 - MGP_AJ_P0034684 Zfp277 protein_coding protein_coding MGP_AJ_T0034685.1 MGP_AJ_G0019670.1 mouse_genomes_project 12 37461903 37587331 - MGP_AJ_P0034685 Zfp277 protein_coding protein_coding MGP_AJ_T0034663.1 MGP_AJ_G0019665.1 mouse_genomes_project 12 37149416 37181294 - MGP_AJ_P0034663 Arl4a protein_coding nonsense_mediated_decay MGP_AJ_T0034664.1 MGP_AJ_G0019665.1 mouse_genomes_project 12 37149416 37181303 - MGP_AJ_P0034664 Arl4a protein_coding nonsense_mediated_decay MGP_AJ_T0034665.1 MGP_AJ_G0019665.1 mouse_genomes_project 12 37153563 37158433 - Arl4a protein_coding processed_transcript MGP_AJ_T0034666.1 MGP_AJ_G0019665.1 mouse_genomes_project 12 37177217 37181356 - MGP_AJ_P0034666 Arl4a protein_coding protein_coding MGP_AJ_T0034667.1 MGP_AJ_G0019665.1 mouse_genomes_project 12 37179748 37181952 - MGP_AJ_P0034667 Arl4a protein_coding protein_coding MGP_AJ_T0034743.1 MGP_AJ_G0019699.1 mouse_genomes_project 12 51717510 51749758 - MGP_AJ_P0034743 Eapp protein_coding protein_coding MGP_AJ_T0034744.1 MGP_AJ_G0019699.1 mouse_genomes_project 12 51719558 51749795 - MGP_AJ_P0034744 Eapp protein_coding protein_coding MGP_AJ_T0034745.1 MGP_AJ_G0019699.1 mouse_genomes_project 12 51733986 51749817 - MGP_AJ_P0034745 Eapp protein_coding protein_coding MGP_AJ_T0034746.1 MGP_AJ_G0019699.1 mouse_genomes_project 12 51738156 51749836 - MGP_AJ_P0034746 Eapp protein_coding protein_coding MGP_AJ_T0034738.1 MGP_AJ_G0019695.1 mouse_genomes_project 12 49713085 50171530 + MGP_AJ_P0034738 Akap6 protein_coding protein_coding MGP_AJ_T0034748.1 MGP_AJ_G0019701.1 mouse_genomes_project 12 51910487 51914543 - MGP_AJ_P0034748 Cfl2 protein_coding protein_coding MGP_AJ_T0006441.1 MGP_AJ_G0005365.1 mouse_genomes_project 12 84990789 84990922 - Gm29362 lincRNA lincRNA MGP_AJ_T0035641.1 MGP_AJ_G0019981.1 mouse_genomes_project 12 99373195 99447217 - MGP_AJ_P0035641 Fbln5 protein_coding protein_coding MGP_AJ_T0035858.1 MGP_AJ_G0020066.1 mouse_genomes_project 12 106833776 106970841 + MGP_AJ_P0035858 Wdr25 protein_coding unknown_likely_coding MGP_AJ_T0034949.1 MGP_AJ_G0019771.1 mouse_genomes_project 12 68109575 68135015 + Psma3 protein_coding retained_intron MGP_AJ_T0034950.1 MGP_AJ_G0019771.1 mouse_genomes_project 12 68109575 68135435 + MGP_AJ_P0034950 Psma3 protein_coding nonsense_mediated_decay MGP_AJ_T0034951.1 MGP_AJ_G0019771.1 mouse_genomes_project 12 68109597 68135018 + MGP_AJ_P0034951 Psma3 protein_coding nonsense_mediated_decay MGP_AJ_T0034952.1 MGP_AJ_G0019771.1 mouse_genomes_project 12 68109612 68119676 + Psma3 protein_coding retained_intron MGP_AJ_T0034953.1 MGP_AJ_G0019771.1 mouse_genomes_project 12 68109619 68134989 + MGP_AJ_P0034953 Psma3 protein_coding nonsense_mediated_decay MGP_AJ_T0034954.1 MGP_AJ_G0019771.1 mouse_genomes_project 12 68109623 68124955 + Psma3 protein_coding retained_intron MGP_AJ_T0034955.1 MGP_AJ_G0019771.1 mouse_genomes_project 12 68109651 68134909 + MGP_AJ_P0034955 Psma3 protein_coding protein_coding MGP_AJ_T0034956.1 MGP_AJ_G0019771.1 mouse_genomes_project 12 68127009 68135019 + MGP_AJ_P0034956 Psma3 protein_coding protein_coding MGP_AJ_T0035123.1 MGP_AJ_G0019832.1 mouse_genomes_project 12 76288868 76314060 + MGP_AJ_P0035123 Eif2s1 protein_coding protein_coding MGP_AJ_T0000857.1 MGP_AJ_G0000792.1 mouse_genomes_project 12 54627203 54631725 + TEC TEC MGP_AJ_T0035706.1 MGP_AJ_G0020003.1 mouse_genomes_project 12 101029349 101046993 + MGP_AJ_P0035706 Otub2 protein_coding protein_coding MGP_AJ_T0035707.1 MGP_AJ_G0020003.1 mouse_genomes_project 12 101029365 101046999 + MGP_AJ_P0035707 Otub2 protein_coding protein_coding MGP_AJ_T0035708.1 MGP_AJ_G0020003.1 mouse_genomes_project 12 101029433 101046999 + Otub2 protein_coding retained_intron MGP_AJ_T0035709.1 MGP_AJ_G0020003.1 mouse_genomes_project 12 101029652 101043555 + MGP_AJ_P0035709 Otub2 protein_coding protein_coding MGP_AJ_T0035710.1 MGP_AJ_G0020003.1 mouse_genomes_project 12 101033307 101047004 + MGP_AJ_P0035710 Otub2 protein_coding protein_coding MGP_AJ_T0035206.1 MGP_AJ_G0019862.1 mouse_genomes_project 12 79048214 79067869 - MGP_AJ_P0035206 Med6 protein_coding protein_coding MGP_AJ_T0035207.1 MGP_AJ_G0019862.1 mouse_genomes_project 12 79048351 79049402 - Med6 protein_coding retained_intron MGP_AJ_T0035208.1 MGP_AJ_G0019862.1 mouse_genomes_project 12 79058203 79067916 - Med6 protein_coding retained_intron MGP_AJ_T0009875.1 MGP_AJ_G0007997.1 mouse_genomes_project 12 107653205 107653287 + Mir487b miRNA miRNA MGP_AJ_T0100690.1 MGP_AJ_G0038656.1 mouse_genomes_project 12 107568881 107568955 + snoRNA snoRNA MGP_AJ_T0035951.1 MGP_AJ_G0020096.1 mouse_genomes_project 12 109735969 109758639 + MGP_AJ_P0035951 Apopt1 protein_coding protein_coding MGP_AJ_T0035952.1 MGP_AJ_G0020096.1 mouse_genomes_project 12 109735988 109781106 + MGP_AJ_P0035952 Apopt1 protein_coding protein_coding MGP_AJ_T0035953.1 MGP_AJ_G0020096.1 mouse_genomes_project 12 109735988 109777799 + MGP_AJ_P0035953 Apopt1 protein_coding protein_coding MGP_AJ_T0035954.1 MGP_AJ_G0020096.1 mouse_genomes_project 12 109735992 109745760 + MGP_AJ_P0035954 Apopt1 protein_coding nonsense_mediated_decay MGP_AJ_T0035955.1 MGP_AJ_G0020096.1 mouse_genomes_project 12 109735994 109749933 + MGP_AJ_P0035955 Apopt1 protein_coding protein_coding MGP_AJ_T0035768.1 MGP_AJ_G0020031.1 mouse_genomes_project 12 102231254 102233376 - MGP_AJ_P0035768 Gsc protein_coding protein_coding MGP_AJ_T0006405.1 MGP_AJ_G0005337.1 mouse_genomes_project 12 29937934 29942935 + Gdap10 lincRNA lincRNA MGP_AJ_T0034998.1 MGP_AJ_G0019785.1 mouse_genomes_project 12 69755662 69767716 - MGP_AJ_P0034998 unknown_likely_coding unknown_likely_coding MGP_AJ_T0035873.1 MGP_AJ_G0020069.1 mouse_genomes_project 12 107512358 107523141 - MGP_AJ_P0035873 Rtl1 protein_coding protein_coding MGP_AJ_T0006466.1 MGP_AJ_G0005386.1 mouse_genomes_project 12 105095236 105098416 + Gm2800 lincRNA lincRNA MGP_AJ_T0035405.1 MGP_AJ_G0019919.1 mouse_genomes_project 12 83104861 83146515 + MGP_AJ_P0035405 Jdp2 protein_coding protein_coding MGP_AJ_T0035406.1 MGP_AJ_G0019919.1 mouse_genomes_project 12 83105172 83146514 + MGP_AJ_P0035406 Jdp2 protein_coding protein_coding MGP_AJ_T0035407.1 MGP_AJ_G0019919.1 mouse_genomes_project 12 83105774 83146515 + MGP_AJ_P0035407 Jdp2 protein_coding protein_coding MGP_AJ_T0035788.1 MGP_AJ_G0020044.1 mouse_genomes_project 12 103315793 103357380 + MGP_AJ_P0035788 D430019H16Rik protein_coding protein_coding MGP_AJ_T0011320.1 MGP_AJ_G0009442.1 mouse_genomes_project 12 8577416 8577724 - Gm23781 misc_RNA misc_RNA MGP_AJ_T0006443.1 MGP_AJ_G0005367.1 mouse_genomes_project 12 88436144 88644521 - 4930544I03Rik lincRNA lincRNA MGP_AJ_T0034909.1 MGP_AJ_G0019758.1 mouse_genomes_project 12 66841292 66866402 + MGP_AJ_P0034909 Atp5s protein_coding protein_coding MGP_AJ_T0034468.1 MGP_AJ_G0019593.1 mouse_genomes_project 12 18240102 18270990 - MGP_AJ_P0034468 Ywhaq protein_coding protein_coding MGP_AJ_T0034469.1 MGP_AJ_G0019593.1 mouse_genomes_project 12 18248055 18250522 - Ywhaq protein_coding retained_intron MGP_AJ_T0035463.1 MGP_AJ_G0019933.1 mouse_genomes_project 12 84527108 84532409 - MGP_AJ_P0035463 Zdhhc22 protein_coding protein_coding MGP_AJ_T0006390.1 MGP_AJ_G0005325.1 mouse_genomes_project 12 5782509 5786782 - 9930038B18Rik lincRNA lincRNA MGP_AJ_T0000086.1 MGP_AJ_G0000068.1 mouse_genomes_project 12 112482683 112483114 - MGP_AJ_P0000086 Ighv3-6 IG_V_gene IG_V_gene MGP_AJ_T0000087.1 MGP_AJ_G0000068.1 mouse_genomes_project 12 112482688 112483114 - MGP_AJ_P0000087 Ighv3-6 IG_V_gene IG_V_gene MGP_AJ_T0017293.1 MGP_AJ_G0015202.1 mouse_genomes_project 12 30237776 30274627 - F730043M19Rik processed_transcript processed_transcript MGP_AJ_T0017294.1 MGP_AJ_G0015202.1 mouse_genomes_project 12 30251935 30273950 - F730043M19Rik processed_transcript processed_transcript MGP_AJ_T0017295.1 MGP_AJ_G0015202.1 mouse_genomes_project 12 30259054 30274627 - F730043M19Rik processed_transcript processed_transcript MGP_AJ_T0017296.1 MGP_AJ_G0015202.1 mouse_genomes_project 12 30260634 30274638 - F730043M19Rik processed_transcript processed_transcript MGP_AJ_T0017297.1 MGP_AJ_G0015202.1 mouse_genomes_project 12 30261368 30266879 - F730043M19Rik processed_transcript processed_transcript MGP_AJ_T0017298.1 MGP_AJ_G0015202.1 mouse_genomes_project 12 30274185 30274637 - F730043M19Rik processed_transcript processed_transcript MGP_AJ_T0100668.1 MGP_AJ_G0038634.1 mouse_genomes_project 12 62511330 62511455 - Gm26015 snoRNA snoRNA MGP_AJ_T0009874.1 MGP_AJ_G0007996.1 mouse_genomes_project 12 107652694 107652769 + Mir381 miRNA miRNA MGP_AJ_T0000236.1 MGP_AJ_G0000180.1 mouse_genomes_project 12 111967435 111969727 - IG_V_pseudogene IG_V_pseudogene MGP_AJ_T0009883.1 MGP_AJ_G0008005.1 mouse_genomes_project 12 107660783 107660856 + Mir485 miRNA miRNA MGP_AJ_T0034571.1 MGP_AJ_G0019633.1 mouse_genomes_project 12 28831557 28838620 - MGP_AJ_P0034571 Gpr22 protein_coding protein_coding MGP_AJ_T0034572.1 MGP_AJ_G0019633.1 mouse_genomes_project 12 28833402 28838641 - MGP_AJ_P0034572 Gpr22 protein_coding protein_coding MGP_AJ_T0034573.1 MGP_AJ_G0019633.1 mouse_genomes_project 12 28834139 28838627 - MGP_AJ_P0034573 Gpr22 protein_coding protein_coding MGP_AJ_T0099420.1 MGP_AJ_G0037386.1 mouse_genomes_project 12 73625685 73625759 - Gm25563 snRNA snRNA MGP_AJ_T0012810.1 MGP_AJ_G0010905.1 mouse_genomes_project 12 48330014 48330488 + processed_pseudogene processed_pseudogene MGP_AJ_T0102279.1 MGP_AJ_G0040021.1 mouse_genomes_project 12 114376144 114376664 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0003386.1 MGP_AJ_G0003108.1 mouse_genomes_project 12 30320764 30345252 - Atxn7l1os1 antisense antisense MGP_AJ_T0035543.1 MGP_AJ_G0019954.1 mouse_genomes_project 12 89191040 89222468 - MGP_AJ_P0035543 Gtf2a1 protein_coding protein_coding MGP_AJ_T0035614.1 MGP_AJ_G0019973.1 mouse_genomes_project 12 97945166 98064304 - MGP_AJ_P0035614 Ttc7b protein_coding unknown_likely_coding MGP_AJ_T0035615.1 MGP_AJ_G0019973.1 mouse_genomes_project 12 97945169 98157302 - MGP_AJ_P0035615 Ttc7b protein_coding protein_coding MGP_AJ_T0009805.1 MGP_AJ_G0007927.1 mouse_genomes_project 12 73740104 73740183 - Mir5135 miRNA miRNA MGP_AJ_T0035488.1 MGP_AJ_G0019944.1 mouse_genomes_project 12 84857052 84941107 - MGP_AJ_P0035488 Sptlc2 protein_coding protein_coding MGP_AJ_T0035489.1 MGP_AJ_G0019944.1 mouse_genomes_project 12 84859932 84896140 - Sptlc2 protein_coding retained_intron MGP_AJ_T0035490.1 MGP_AJ_G0019944.1 mouse_genomes_project 12 84861501 84880464 - Sptlc2 protein_coding processed_transcript MGP_AJ_T0035491.1 MGP_AJ_G0019944.1 mouse_genomes_project 12 84898749 84902674 - Sptlc2 protein_coding retained_intron MGP_AJ_T0035492.1 MGP_AJ_G0019944.1 mouse_genomes_project 12 84899025 84940993 - Sptlc2 protein_coding processed_transcript MGP_AJ_T0034881.1 MGP_AJ_G0019745.1 mouse_genomes_project 12 66294245 66295501 - MGP_AJ_P0034881 Rpl36al protein_coding protein_coding MGP_AJ_T0034882.1 MGP_AJ_G0019745.1 mouse_genomes_project 12 66294252 66295528 - MGP_AJ_P0034882 Rpl36al protein_coding protein_coding MGP_AJ_T0034883.1 MGP_AJ_G0019745.1 mouse_genomes_project 12 66294255 66295598 - MGP_AJ_P0034883 Rpl36al protein_coding protein_coding MGP_AJ_T0003385.1 MGP_AJ_G0003107.1 mouse_genomes_project 12 28604166 28605098 + Gm29542 antisense antisense MGP_AJ_T0000267.1 MGP_AJ_G0000211.1 mouse_genomes_project 12 114463747 114464181 - IG_V_pseudogene IG_V_pseudogene MGP_AJ_T0100679.1 MGP_AJ_G0038645.1 mouse_genomes_project 12 88495375 88495504 + Gm23195 snoRNA snoRNA MGP_AJ_T0017304.1 MGP_AJ_G0015208.1 mouse_genomes_project 12 79011294 79033374 + 6530401F13Rik processed_transcript processed_transcript MGP_AJ_T0009788.1 MGP_AJ_G0007910.1 mouse_genomes_project 12 32357636 32357723 - Mir680-3 miRNA miRNA MGP_AJ_T0012798.1 MGP_AJ_G0010893.1 mouse_genomes_project 12 2471831 2473021 - processed_pseudogene processed_pseudogene MGP_AJ_T0036101.1 MGP_AJ_G0020147.1 mouse_genomes_project 12 117938868 117972407 + MGP_AJ_P0036101 Macc1 protein_coding protein_coding MGP_AJ_T0006424.1 MGP_AJ_G0005350.1 mouse_genomes_project 12 73609348 73610246 - 4930426I24Rik lincRNA lincRNA MGP_AJ_T0035669.1 MGP_AJ_G0019989.1 mouse_genomes_project 12 100193262 100203075 + MGP_AJ_P0035669 Chga protein_coding protein_coding MGP_AJ_T0034401.1 MGP_AJ_G0019574.1 mouse_genomes_project 12 11431012 11432395 + MGP_AJ_P0034401 Gm9847 protein_coding protein_coding MGP_AJ_T0035350.1 MGP_AJ_G0019901.1 mouse_genomes_project 12 82252662 82271222 - MGP_AJ_P0035350 Npc2 protein_coding protein_coding MGP_AJ_T0034707.1 MGP_AJ_G0019679.1 mouse_genomes_project 12 44822345 44822808 + MGP_AJ_P0034707 protein_coding protein_coding MGP_AJ_T0035493.1 MGP_AJ_G0019945.1 mouse_genomes_project 12 84978957 84982543 - Alkbh1 protein_coding processed_transcript MGP_AJ_T0035494.1 MGP_AJ_G0019945.1 mouse_genomes_project 12 84979286 84996946 - MGP_AJ_P0035494 Alkbh1 protein_coding protein_coding MGP_AJ_T0035495.1 MGP_AJ_G0019945.1 mouse_genomes_project 12 84981194 84996935 - MGP_AJ_P0035495 Alkbh1 protein_coding nonsense_mediated_decay MGP_AJ_T0035496.1 MGP_AJ_G0019945.1 mouse_genomes_project 12 84981194 84996933 - MGP_AJ_P0035496 Alkbh1 protein_coding nonsense_mediated_decay MGP_AJ_T0035497.1 MGP_AJ_G0019945.1 mouse_genomes_project 12 84981197 84996943 - MGP_AJ_P0035497 Alkbh1 protein_coding nonsense_mediated_decay MGP_AJ_T0035498.1 MGP_AJ_G0019945.1 mouse_genomes_project 12 84981915 84996935 - MGP_AJ_P0035498 Alkbh1 protein_coding nonsense_mediated_decay MGP_AJ_T0035499.1 MGP_AJ_G0019945.1 mouse_genomes_project 12 84982226 84991666 - MGP_AJ_P0035499 Alkbh1 protein_coding protein_coding MGP_AJ_T0035500.1 MGP_AJ_G0019945.1 mouse_genomes_project 12 84984535 84994833 - Alkbh1 protein_coding processed_transcript MGP_AJ_T0035501.1 MGP_AJ_G0019945.1 mouse_genomes_project 12 84986351 84996940 - MGP_AJ_P0035501 Alkbh1 protein_coding nonsense_mediated_decay MGP_AJ_T0035502.1 MGP_AJ_G0019945.1 mouse_genomes_project 12 84986362 84996946 - Alkbh1 protein_coding retained_intron MGP_AJ_T0035503.1 MGP_AJ_G0019945.1 mouse_genomes_project 12 84995789 84997124 - Alkbh1 protein_coding retained_intron MGP_AJ_T0035504.1 MGP_AJ_G0019945.1 mouse_genomes_project 12 84996617 84997025 - MGP_AJ_P0035504 Alkbh1 protein_coding protein_coding MGP_AJ_T0012845.1 MGP_AJ_G0010940.1 mouse_genomes_project 12 89599713 89600908 - processed_pseudogene processed_pseudogene MGP_AJ_T0012847.1 MGP_AJ_G0010942.1 mouse_genomes_project 12 96880554 96880805 + processed_pseudogene processed_pseudogene MGP_AJ_T0012800.1 MGP_AJ_G0010895.1 mouse_genomes_project 12 5697307 5699688 + processed_pseudogene processed_pseudogene MGP_AJ_T0006431.1 MGP_AJ_G0005355.1 mouse_genomes_project 12 78202207 78205069 + Gm26796 lincRNA lincRNA MGP_AJ_T0101715.1 MGP_AJ_G0039660.1 mouse_genomes_project 12 98784834 98788499 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0101716.1 MGP_AJ_G0039660.1 mouse_genomes_project 12 98788327 98788979 + transcribed_processed_pseudogene processed_transcript MGP_AJ_T0034805.1 MGP_AJ_G0019722.1 mouse_genomes_project 12 55294016 55296133 + MGP_AJ_P0034805 Sstr1 protein_coding protein_coding MGP_AJ_T0034806.1 MGP_AJ_G0019722.1 mouse_genomes_project 12 55294048 55296686 + MGP_AJ_P0034806 Sstr1 protein_coding protein_coding MGP_AJ_T0035001.1 MGP_AJ_G0019787.1 mouse_genomes_project 12 69915374 69949576 + MGP_AJ_P0035001 Ppm1a protein_coding protein_coding MGP_AJ_T0034584.1 MGP_AJ_G0019635.1 mouse_genomes_project 12 29087981 29184660 - MGP_AJ_P0034584 Prkar2b protein_coding protein_coding MGP_AJ_T0012851.1 MGP_AJ_G0010946.1 mouse_genomes_project 12 99494558 99494905 + processed_pseudogene processed_pseudogene MGP_AJ_T0035079.1 MGP_AJ_G0019814.1 mouse_genomes_project 12 73551616 73562883 - MGP_AJ_P0035079 Zbtb25 protein_coding protein_coding MGP_AJ_T0035080.1 MGP_AJ_G0019814.1 mouse_genomes_project 12 73553621 73575160 - MGP_AJ_P0035080 Zbtb25 protein_coding protein_coding MGP_AJ_T0035081.1 MGP_AJ_G0019814.1 mouse_genomes_project 12 73553665 73574695 - MGP_AJ_P0035081 Zbtb25 protein_coding protein_coding MGP_AJ_T0035082.1 MGP_AJ_G0019814.1 mouse_genomes_project 12 73553666 73575298 - MGP_AJ_P0035082 Zbtb25 protein_coding protein_coding MGP_AJ_T0035083.1 MGP_AJ_G0019814.1 mouse_genomes_project 12 73554747 73575089 - MGP_AJ_P0035083 Zbtb25 protein_coding protein_coding MGP_AJ_T0035084.1 MGP_AJ_G0019814.1 mouse_genomes_project 12 73554864 73575160 - MGP_AJ_P0035084 Zbtb25 protein_coding protein_coding MGP_AJ_T0035831.1 MGP_AJ_G0020058.1 mouse_genomes_project 12 106264662 106293839 + MGP_AJ_P0035831 Cyp46a1 protein_coding protein_coding MGP_AJ_T0034295.1 MGP_AJ_G0019529.1 mouse_genomes_project 12 840398 916960 - MGP_AJ_P0034295 Efr3b protein_coding protein_coding MGP_AJ_T0012858.1 MGP_AJ_G0010953.1 mouse_genomes_project 12 104789569 104790050 - processed_pseudogene processed_pseudogene MGP_AJ_T0100655.1 MGP_AJ_G0038621.1 mouse_genomes_project 12 38499514 38499646 - Gm25497 snoRNA snoRNA MGP_AJ_T0000106.1 MGP_AJ_G0000083.1 mouse_genomes_project 12 112727896 112728330 - MGP_AJ_P0000106 Ighv1-4 IG_V_gene IG_V_gene MGP_AJ_T0099415.1 MGP_AJ_G0037381.1 mouse_genomes_project 12 64728791 64728977 + Gm26256 snRNA snRNA MGP_AJ_T0006421.1 MGP_AJ_G0005349.1 mouse_genomes_project 12 71471319 71483058 + lincRNA lincRNA MGP_AJ_T0006422.1 MGP_AJ_G0005349.1 mouse_genomes_project 12 71471327 71483072 + lincRNA lincRNA MGP_AJ_T0006423.1 MGP_AJ_G0005349.1 mouse_genomes_project 12 71475773 71483072 + lincRNA lincRNA MGP_AJ_T0012854.1 MGP_AJ_G0010949.1 mouse_genomes_project 12 101989691 101990778 - processed_pseudogene processed_pseudogene MGP_AJ_T0034730.1 MGP_AJ_G0019691.1 mouse_genomes_project 12 49023092 49042061 - MGP_AJ_P0034730 Dtd2 protein_coding protein_coding MGP_AJ_T0034731.1 MGP_AJ_G0019691.1 mouse_genomes_project 12 49032533 49042061 - MGP_AJ_P0034731 Dtd2 protein_coding protein_coding MGP_AJ_T0035944.1 MGP_AJ_G0020093.1 mouse_genomes_project 12 109691730 109694713 - MGP_AJ_P0035944 Ckb protein_coding protein_coding MGP_AJ_T0034747.1 MGP_AJ_G0019700.1 mouse_genomes_project 12 51804448 51848105 - MGP_AJ_P0034747 Snx6 protein_coding protein_coding MGP_AJ_T0006444.1 MGP_AJ_G0005368.1 mouse_genomes_project 12 96824982 96826389 + Gm28933 lincRNA lincRNA MGP_AJ_T0000037.1 MGP_AJ_G0000029.1 mouse_genomes_project 12 111584574 111584584 - IG_D_pseudogene IG_D_pseudogene MGP_AJ_T0009902.1 MGP_AJ_G0008024.1 mouse_genomes_project 12 110938226 110938285 - Mir6941 miRNA miRNA MGP_AJ_T0102269.1 MGP_AJ_G0040012.1 mouse_genomes_project 12 45939788 45940028 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0035993.1 MGP_AJ_G0020106.1 mouse_genomes_project 12 110442244 110451430 - MGP_AJ_P0035993 A730018C14Rik protein_coding protein_coding MGP_AJ_T0035299.1 MGP_AJ_G0019886.1 mouse_genomes_project 12 81623533 81625892 - MGP_AJ_P0035299 Pnma1 protein_coding protein_coding MGP_AJ_T0009780.1 MGP_AJ_G0007902.1 mouse_genomes_project 12 8183749 8183807 + Mir7675 miRNA miRNA MGP_AJ_T0100661.1 MGP_AJ_G0038627.1 mouse_genomes_project 12 53349675 53349805 - Gm25917 snoRNA snoRNA MGP_AJ_T0034597.1 MGP_AJ_G0019640.1 mouse_genomes_project 12 30156224 30218702 - MGP_AJ_P0034597 Cdhr3 protein_coding protein_coding MGP_AJ_T0034686.1 MGP_AJ_G0019671.1 mouse_genomes_project 12 37587614 37994829 + MGP_AJ_P0034686 Dock4 protein_coding protein_coding MGP_AJ_T0100682.1 MGP_AJ_G0038648.1 mouse_genomes_project 12 99885660 99885875 - Gm25203 snoRNA snoRNA MGP_AJ_T0000245.1 MGP_AJ_G0000189.1 mouse_genomes_project 12 112500238 112500671 - IG_V_pseudogene IG_V_pseudogene MGP_AJ_T0011323.1 MGP_AJ_G0009445.1 mouse_genomes_project 12 32151993 32152234 - Gm24359 misc_RNA misc_RNA MGP_AJ_T0034381.1 MGP_AJ_G0019561.1 mouse_genomes_project 12 7284832 7305546 + MGP_AJ_P0034381 Nt5c1b protein_coding nonsense_mediated_decay MGP_AJ_T0034382.1 MGP_AJ_G0019561.1 mouse_genomes_project 12 7284838 7305549 + MGP_AJ_P0034382 Nt5c1b protein_coding protein_coding MGP_AJ_T0034383.1 MGP_AJ_G0019561.1 mouse_genomes_project 12 7284838 7289957 + MGP_AJ_P0034383 Nt5c1b protein_coding protein_coding MGP_AJ_T0034384.1 MGP_AJ_G0019561.1 mouse_genomes_project 12 7284903 7305546 + MGP_AJ_P0034384 Nt5c1b protein_coding protein_coding MGP_AJ_T0035797.1 MGP_AJ_G0020050.1 mouse_genomes_project 12 103656832 103715474 + MGP_AJ_P0035797 Papola protein_coding protein_coding MGP_AJ_T0035798.1 MGP_AJ_G0020050.1 mouse_genomes_project 12 103656842 103715606 + MGP_AJ_P0035798 Papola protein_coding nonsense_mediated_decay MGP_AJ_T0035799.1 MGP_AJ_G0020050.1 mouse_genomes_project 12 103656849 103686286 + Papola protein_coding processed_transcript MGP_AJ_T0035800.1 MGP_AJ_G0020050.1 mouse_genomes_project 12 103656854 103713798 + MGP_AJ_P0035800 Papola protein_coding protein_coding MGP_AJ_T0035801.1 MGP_AJ_G0020050.1 mouse_genomes_project 12 103656871 103690808 + Papola protein_coding retained_intron MGP_AJ_T0035802.1 MGP_AJ_G0020050.1 mouse_genomes_project 12 103656876 103713525 + MGP_AJ_P0035802 Papola protein_coding nonsense_mediated_decay MGP_AJ_T0035803.1 MGP_AJ_G0020050.1 mouse_genomes_project 12 103656878 103686448 + Papola protein_coding processed_transcript MGP_AJ_T0035804.1 MGP_AJ_G0020050.1 mouse_genomes_project 12 103656881 103715611 + MGP_AJ_P0035804 Papola protein_coding nonsense_mediated_decay MGP_AJ_T0035805.1 MGP_AJ_G0020050.1 mouse_genomes_project 12 103656883 103683328 + MGP_AJ_P0035805 Papola protein_coding nonsense_mediated_decay MGP_AJ_T0035806.1 MGP_AJ_G0020050.1 mouse_genomes_project 12 103656895 103686448 + MGP_AJ_P0035806 Papola protein_coding protein_coding MGP_AJ_T0035807.1 MGP_AJ_G0020050.1 mouse_genomes_project 12 103657010 103713940 + MGP_AJ_P0035807 Papola protein_coding protein_coding MGP_AJ_T0035808.1 MGP_AJ_G0020050.1 mouse_genomes_project 12 103657045 103715616 + MGP_AJ_P0035808 Papola protein_coding protein_coding MGP_AJ_T0035809.1 MGP_AJ_G0020050.1 mouse_genomes_project 12 103676423 103688151 + Papola protein_coding retained_intron MGP_AJ_T0035810.1 MGP_AJ_G0020050.1 mouse_genomes_project 12 103685352 103697118 + MGP_AJ_P0035810 Papola protein_coding nonsense_mediated_decay MGP_AJ_T0035811.1 MGP_AJ_G0020050.1 mouse_genomes_project 12 103686062 103686448 + Papola protein_coding retained_intron MGP_AJ_T0035812.1 MGP_AJ_G0020050.1 mouse_genomes_project 12 103689038 103713777 + MGP_AJ_P0035812 Papola protein_coding protein_coding MGP_AJ_T0035813.1 MGP_AJ_G0020050.1 mouse_genomes_project 12 103689089 103705913 + MGP_AJ_P0035813 Papola protein_coding protein_coding MGP_AJ_T0035814.1 MGP_AJ_G0020050.1 mouse_genomes_project 12 103694618 103695569 + Papola protein_coding retained_intron MGP_AJ_T0035815.1 MGP_AJ_G0020050.1 mouse_genomes_project 12 103705733 103712166 + MGP_AJ_P0035815 Papola protein_coding protein_coding MGP_AJ_T0012861.1 MGP_AJ_G0010956.1 mouse_genomes_project 12 106371918 106372659 - processed_pseudogene processed_pseudogene MGP_AJ_T0035117.1 MGP_AJ_G0019828.1 mouse_genomes_project 12 75426380 76115909 + MGP_AJ_P0035117 Gphn protein_coding protein_coding MGP_AJ_T0035118.1 MGP_AJ_G0019828.1 mouse_genomes_project 12 75426380 76115909 + MGP_AJ_P0035118 Gphn protein_coding protein_coding MGP_AJ_T0035119.1 MGP_AJ_G0019828.1 mouse_genomes_project 12 75426503 76115908 + MGP_AJ_P0035119 Gphn protein_coding unknown_likely_coding MGP_AJ_T0035730.1 MGP_AJ_G0020009.1 mouse_genomes_project 12 101268821 101279595 - MGP_AJ_P0035730 Serpina10 protein_coding protein_coding MGP_AJ_T0035731.1 MGP_AJ_G0020009.1 mouse_genomes_project 12 101270614 101279572 - MGP_AJ_P0035731 Serpina10 protein_coding protein_coding MGP_AJ_T0034419.1 MGP_AJ_G0019579.1 mouse_genomes_project 12 13715504 13732683 + MGP_AJ_P0034419 E2f6 protein_coding protein_coding MGP_AJ_T0034420.1 MGP_AJ_G0019579.1 mouse_genomes_project 12 13715507 13729863 + MGP_AJ_P0034420 E2f6 protein_coding unknown_likely_coding MGP_AJ_T0000126.1 MGP_AJ_G0000095.1 mouse_genomes_project 12 114449882 114451633 - MGP_AJ_P0000126 Ighv1-67 IG_V_gene IG_V_gene MGP_AJ_T0000865.1 MGP_AJ_G0000800.1 mouse_genomes_project 12 86908122 86910032 - TEC TEC MGP_AJ_T0012855.1 MGP_AJ_G0010950.1 mouse_genomes_project 12 104347047 104347393 + processed_pseudogene processed_pseudogene MGP_AJ_T0034298.1 MGP_AJ_G0019531.1 mouse_genomes_project 12 1017469 1099275 + Adcy3 protein_coding retained_intron MGP_AJ_T0034299.1 MGP_AJ_G0019531.1 mouse_genomes_project 12 1017470 1099275 + MGP_AJ_P0034299 Adcy3 protein_coding protein_coding MGP_AJ_T0034300.1 MGP_AJ_G0019531.1 mouse_genomes_project 12 1017763 1099275 + MGP_AJ_P0034300 Adcy3 protein_coding protein_coding MGP_AJ_T0034301.1 MGP_AJ_G0019531.1 mouse_genomes_project 12 1017768 1099274 + MGP_AJ_P0034301 Adcy3 protein_coding protein_coding MGP_AJ_T0034302.1 MGP_AJ_G0019531.1 mouse_genomes_project 12 1018519 1099274 + MGP_AJ_P0034302 Adcy3 protein_coding protein_coding MGP_AJ_T0034303.1 MGP_AJ_G0019531.1 mouse_genomes_project 12 1045708 1070490 + Adcy3 protein_coding processed_transcript MGP_AJ_T0034304.1 MGP_AJ_G0019531.1 mouse_genomes_project 12 1080769 1082853 + Adcy3 protein_coding retained_intron MGP_AJ_T0034307.1 MGP_AJ_G0019531.1 mouse_genomes_project 12 1089211 1092191 + Adcy3 protein_coding retained_intron MGP_AJ_T0034348.1 MGP_AJ_G0019552.1 mouse_genomes_project 12 5388370 5390592 - MGP_AJ_P0034348 Rhob protein_coding protein_coding MGP_AJ_T0034569.1 MGP_AJ_G0019631.1 mouse_genomes_project 12 28760034 28774818 - MGP_AJ_P0034569 Dus4l protein_coding protein_coding MGP_AJ_T0000264.1 MGP_AJ_G0000208.1 mouse_genomes_project 12 113972812 113973242 - IG_V_pseudogene IG_V_pseudogene MGP_AJ_T0036086.1 MGP_AJ_G0020141.1 mouse_genomes_project 12 116328542 116363191 + MGP_AJ_P0036086 Cdca7l protein_coding protein_coding MGP_AJ_T0036087.1 MGP_AJ_G0020141.1 mouse_genomes_project 12 116328911 116358244 + MGP_AJ_P0036087 Cdca7l protein_coding protein_coding MGP_AJ_T0036088.1 MGP_AJ_G0020141.1 mouse_genomes_project 12 116328915 116360116 + MGP_AJ_P0036088 Cdca7l protein_coding protein_coding MGP_AJ_T0034724.1 MGP_AJ_G0019687.1 mouse_genomes_project 12 48633777 48718844 - MGP_AJ_P0034724 Strn3 protein_coding protein_coding MGP_AJ_T0034725.1 MGP_AJ_G0019687.1 mouse_genomes_project 12 48633777 48718844 - MGP_AJ_P0034725 Strn3 protein_coding protein_coding MGP_AJ_T0035304.1 MGP_AJ_G0019888.1 mouse_genomes_project 12 81763611 81794379 + MGP_AJ_P0035304 Ptgr2 protein_coding protein_coding MGP_AJ_T0035305.1 MGP_AJ_G0019888.1 mouse_genomes_project 12 81763744 81781982 + Ptgr2 protein_coding retained_intron MGP_AJ_T0035306.1 MGP_AJ_G0019888.1 mouse_genomes_project 12 81763753 81787912 + MGP_AJ_P0035306 Ptgr2 protein_coding protein_coding MGP_AJ_T0035307.1 MGP_AJ_G0019888.1 mouse_genomes_project 12 81763760 81776325 + Ptgr2 protein_coding retained_intron MGP_AJ_T0035308.1 MGP_AJ_G0019888.1 mouse_genomes_project 12 81763763 81786391 + Ptgr2 protein_coding processed_transcript MGP_AJ_T0035309.1 MGP_AJ_G0019888.1 mouse_genomes_project 12 81763778 81784038 + Ptgr2 protein_coding processed_transcript MGP_AJ_T0035310.1 MGP_AJ_G0019888.1 mouse_genomes_project 12 81763779 81792649 + MGP_AJ_P0035310 Ptgr2 protein_coding protein_coding MGP_AJ_T0035311.1 MGP_AJ_G0019888.1 mouse_genomes_project 12 81763785 81793401 + MGP_AJ_P0035311 Ptgr2 protein_coding protein_coding MGP_AJ_T0035312.1 MGP_AJ_G0019888.1 mouse_genomes_project 12 81763792 81792649 + MGP_AJ_P0035312 Ptgr2 protein_coding nonsense_mediated_decay MGP_AJ_T0000112.1 MGP_AJ_G0000087.1 mouse_genomes_project 12 112800188 112800656 - MGP_AJ_P0000112 IG_V_gene IG_V_gene MGP_AJ_T0000113.1 MGP_AJ_G0000087.1 mouse_genomes_project 12 112800188 112800481 - MGP_AJ_P0000113 IG_V_gene IG_V_gene MGP_AJ_T0000114.1 MGP_AJ_G0000087.1 mouse_genomes_project 12 112800188 112800656 - MGP_AJ_P0000114 IG_V_gene IG_V_gene MGP_AJ_T0009840.1 MGP_AJ_G0007962.1 mouse_genomes_project 12 107514783 107514907 + Mir433 miRNA miRNA MGP_AJ_T0035925.1 MGP_AJ_G0020086.1 mouse_genomes_project 12 109304685 109390504 - MGP_AJ_P0035925 Cdc42bpb protein_coding protein_coding MGP_AJ_T0000237.1 MGP_AJ_G0000181.1 mouse_genomes_project 12 111970862 111971282 - IG_V_pseudogene IG_V_pseudogene MGP_AJ_T0012870.1 MGP_AJ_G0010965.1 mouse_genomes_project 12 115091963 115092256 + processed_pseudogene processed_pseudogene MGP_AJ_T0098393.1 MGP_AJ_G0036377.1 mouse_genomes_project 12 52916714 52917684 + pseudogene pseudogene MGP_AJ_T0034323.1 MGP_AJ_G0019541.1 mouse_genomes_project 12 1694348 1704367 + MGP_AJ_P0034323 Sf3b6 protein_coding protein_coding MGP_AJ_T0100649.1 MGP_AJ_G0038615.1 mouse_genomes_project 12 28376018 28376148 - Gm24613 snoRNA snoRNA MGP_AJ_T0035976.1 MGP_AJ_G0020101.1 mouse_genomes_project 12 109992502 109998051 - MGP_AJ_P0035976 2010107E04Rik protein_coding protein_coding MGP_AJ_T0009809.1 MGP_AJ_G0007931.1 mouse_genomes_project 12 82748300 82748363 - Mir6938 miRNA miRNA MGP_AJ_T0035451.1 MGP_AJ_G0019930.1 mouse_genomes_project 12 84262925 84292477 + MGP_AJ_P0035451 Lrrc74a protein_coding protein_coding MGP_AJ_T0099433.1 MGP_AJ_G0037399.1 mouse_genomes_project 12 98856468 98856562 - Gm22749 snRNA snRNA MGP_AJ_T0034878.1 MGP_AJ_G0019743.1 mouse_genomes_project 12 66265496 66266957 - MGP_AJ_P0034878 Rps29 protein_coding protein_coding MGP_AJ_T0034879.1 MGP_AJ_G0019743.1 mouse_genomes_project 12 66266132 66266825 - Rps29 protein_coding retained_intron MGP_AJ_T0009908.1 MGP_AJ_G0008030.1 mouse_genomes_project 12 115736407 115736476 + Mir153 miRNA miRNA MGP_AJ_T0034687.1 MGP_AJ_G0019672.1 mouse_genomes_project 12 38172458 39073302 + MGP_AJ_P0034687 Immp2l protein_coding protein_coding MGP_AJ_T0034688.1 MGP_AJ_G0019672.1 mouse_genomes_project 12 38172494 38217702 + Immp2l protein_coding retained_intron MGP_AJ_T0034689.1 MGP_AJ_G0019672.1 mouse_genomes_project 12 38172495 38260566 + Immp2l protein_coding retained_intron MGP_AJ_T0034690.1 MGP_AJ_G0019672.1 mouse_genomes_project 12 38172697 39072956 + MGP_AJ_P0034690 Immp2l protein_coding protein_coding MGP_AJ_T0034691.1 MGP_AJ_G0019672.1 mouse_genomes_project 12 38217128 38260552 + MGP_AJ_P0034691 Immp2l protein_coding protein_coding MGP_AJ_T0000061.1 MGP_AJ_G0000048.1 mouse_genomes_project 12 111859145 111859452 - MGP_AJ_P0000061 Ighv5-12-4 IG_V_gene IG_V_gene MGP_AJ_T0102280.1 MGP_AJ_G0040022.1 mouse_genomes_project 12 114376148 114376664 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0035878.1 MGP_AJ_G0020072.1 mouse_genomes_project 12 108526745 108592350 + MGP_AJ_P0035878 Dync1h1 protein_coding protein_coding MGP_AJ_T0035879.1 MGP_AJ_G0020072.1 mouse_genomes_project 12 108565595 108566607 + Dync1h1 protein_coding retained_intron MGP_AJ_T0035880.1 MGP_AJ_G0020072.1 mouse_genomes_project 12 108579635 108583688 + MGP_AJ_P0035880 Dync1h1 protein_coding protein_coding MGP_AJ_T0035881.1 MGP_AJ_G0020072.1 mouse_genomes_project 12 108581882 108582817 + Dync1h1 protein_coding retained_intron MGP_AJ_T0035882.1 MGP_AJ_G0020072.1 mouse_genomes_project 12 108584612 108585365 + Dync1h1 protein_coding retained_intron MGP_AJ_T0035883.1 MGP_AJ_G0020072.1 mouse_genomes_project 12 108586039 108586849 + Dync1h1 protein_coding retained_intron MGP_AJ_T0035884.1 MGP_AJ_G0020072.1 mouse_genomes_project 12 108586312 108586880 + Dync1h1 protein_coding retained_intron MGP_AJ_T0035885.1 MGP_AJ_G0020072.1 mouse_genomes_project 12 108588567 108590263 + Dync1h1 protein_coding retained_intron MGP_AJ_T0034538.1 MGP_AJ_G0019621.1 mouse_genomes_project 12 28005697 28024601 - MGP_AJ_P0034538 Acp1 protein_coding protein_coding MGP_AJ_T0034539.1 MGP_AJ_G0019621.1 mouse_genomes_project 12 28008493 28024521 - MGP_AJ_P0034539 Acp1 protein_coding protein_coding MGP_AJ_T0000866.1 MGP_AJ_G0000801.1 mouse_genomes_project 12 100228493 100230640 - TEC TEC MGP_AJ_T0099121.1 MGP_AJ_G0037091.1 mouse_genomes_project 12 70103877 70124128 + Gm26709 sense_overlapping sense_overlapping MGP_AJ_T0099419.1 MGP_AJ_G0037385.1 mouse_genomes_project 12 67802591 67802692 + Gm24474 snRNA snRNA MGP_AJ_T0009886.1 MGP_AJ_G0008008.1 mouse_genomes_project 12 107664996 107665075 + Mir496a miRNA miRNA MGP_AJ_T0034338.1 MGP_AJ_G0019546.1 mouse_genomes_project 12 1798045 1929272 + MGP_AJ_P0034338 Atad2b protein_coding protein_coding MGP_AJ_T0034339.1 MGP_AJ_G0019546.1 mouse_genomes_project 12 1798350 1932627 + MGP_AJ_P0034339 Atad2b protein_coding unknown_likely_coding MGP_AJ_T0035111.1 MGP_AJ_G0019825.1 mouse_genomes_project 12 74141872 74166834 - MGP_AJ_P0035111 Max protein_coding protein_coding MGP_AJ_T0035112.1 MGP_AJ_G0019825.1 mouse_genomes_project 12 74141872 74166834 - MGP_AJ_P0035112 Max protein_coding protein_coding MGP_AJ_T0006457.1 MGP_AJ_G0005380.1 mouse_genomes_project 12 104584559 104617098 - 4933406K04Rik lincRNA lincRNA MGP_AJ_T0006458.1 MGP_AJ_G0005380.1 mouse_genomes_project 12 104595471 104617060 - 4933406K04Rik lincRNA lincRNA MGP_AJ_T0006459.1 MGP_AJ_G0005380.1 mouse_genomes_project 12 104601661 104617069 - 4933406K04Rik lincRNA lincRNA MGP_AJ_T0006460.1 MGP_AJ_G0005380.1 mouse_genomes_project 12 104606784 104617098 - 4933406K04Rik lincRNA lincRNA MGP_AJ_T0035445.1 MGP_AJ_G0019929.1 mouse_genomes_project 12 84229272 84255003 - MGP_AJ_P0035445 Angel1 protein_coding protein_coding MGP_AJ_T0035446.1 MGP_AJ_G0019929.1 mouse_genomes_project 12 84230965 84234940 - Angel1 protein_coding processed_transcript MGP_AJ_T0035447.1 MGP_AJ_G0019929.1 mouse_genomes_project 12 84231083 84245185 - Angel1 protein_coding processed_transcript MGP_AJ_T0035448.1 MGP_AJ_G0019929.1 mouse_genomes_project 12 84231125 84234735 - Angel1 protein_coding processed_transcript MGP_AJ_T0035449.1 MGP_AJ_G0019929.1 mouse_genomes_project 12 84231209 84246729 - Angel1 protein_coding processed_transcript MGP_AJ_T0035450.1 MGP_AJ_G0019929.1 mouse_genomes_project 12 84246888 84250482 - Angel1 protein_coding processed_transcript MGP_AJ_T0035917.1 MGP_AJ_G0020082.1 mouse_genomes_project 12 109046139 109126418 + MGP_AJ_P0035917 Rcor1 protein_coding protein_coding MGP_AJ_T0012848.1 MGP_AJ_G0010943.1 mouse_genomes_project 12 98497060 98497531 - processed_pseudogene processed_pseudogene MGP_AJ_T0000010.1 MGP_AJ_G0000007.1 mouse_genomes_project 12 111369340 111374626 - MGP_AJ_P0000010 Ighg1 IG_C_gene IG_C_gene MGP_AJ_T0000011.1 MGP_AJ_G0000007.1 mouse_genomes_project 12 111372974 111374626 - MGP_AJ_P0000011 Ighg1 IG_C_gene IG_C_gene MGP_AJ_T0034763.1 MGP_AJ_G0019706.1 mouse_genomes_project 12 52375811 52460558 + MGP_AJ_P0034763 1110008L16Rik protein_coding protein_coding MGP_AJ_T0034764.1 MGP_AJ_G0019706.1 mouse_genomes_project 12 52378871 52460634 + MGP_AJ_P0034764 1110008L16Rik protein_coding protein_coding MGP_AJ_T0034765.1 MGP_AJ_G0019706.1 mouse_genomes_project 12 52378984 52383415 + 1110008L16Rik protein_coding retained_intron MGP_AJ_T0034766.1 MGP_AJ_G0019706.1 mouse_genomes_project 12 52379477 52460651 + MGP_AJ_P0034766 1110008L16Rik protein_coding protein_coding MGP_AJ_T0034767.1 MGP_AJ_G0019706.1 mouse_genomes_project 12 52379495 52460671 + MGP_AJ_P0034767 1110008L16Rik protein_coding protein_coding MGP_AJ_T0034768.1 MGP_AJ_G0019706.1 mouse_genomes_project 12 52379520 52460651 + MGP_AJ_P0034768 1110008L16Rik protein_coding protein_coding MGP_AJ_T0012871.1 MGP_AJ_G0010966.1 mouse_genomes_project 12 116317408 116317753 - processed_pseudogene processed_pseudogene MGP_AJ_T0034769.1 MGP_AJ_G0019707.1 mouse_genomes_project 12 52462359 52497527 + MGP_AJ_P0034769 Psma6 protein_coding protein_coding MGP_AJ_T0034770.1 MGP_AJ_G0019707.1 mouse_genomes_project 12 52477297 52497671 + MGP_AJ_P0034770 Psma6 protein_coding protein_coding MGP_AJ_T0034771.1 MGP_AJ_G0019707.1 mouse_genomes_project 12 52477317 52497658 + MGP_AJ_P0034771 Psma6 protein_coding nonsense_mediated_decay MGP_AJ_T0034772.1 MGP_AJ_G0019707.1 mouse_genomes_project 12 52485905 52490949 + Psma6 protein_coding processed_transcript MGP_AJ_T0034749.1 MGP_AJ_G0019702.1 mouse_genomes_project 12 51955189 52052659 - MGP_AJ_P0034749 Baz1a protein_coding protein_coding MGP_AJ_T0034750.1 MGP_AJ_G0019702.1 mouse_genomes_project 12 51955751 52052830 - MGP_AJ_P0034750 Baz1a protein_coding protein_coding MGP_AJ_T0034751.1 MGP_AJ_G0019702.1 mouse_genomes_project 12 51956369 51959056 - Baz1a protein_coding retained_intron MGP_AJ_T0034752.1 MGP_AJ_G0019702.1 mouse_genomes_project 12 51956501 52052577 - MGP_AJ_P0034752 Baz1a protein_coding unknown_likely_coding MGP_AJ_T0034753.1 MGP_AJ_G0019702.1 mouse_genomes_project 12 51988568 51995837 - MGP_AJ_P0034753 Baz1a protein_coding nonsense_mediated_decay MGP_AJ_T0034754.1 MGP_AJ_G0019702.1 mouse_genomes_project 12 52005839 52009886 - MGP_AJ_P0034754 Baz1a protein_coding nonsense_mediated_decay MGP_AJ_T0034755.1 MGP_AJ_G0019702.1 mouse_genomes_project 12 52020289 52082071 - MGP_AJ_P0034755 Baz1a protein_coding protein_coding MGP_AJ_T0034756.1 MGP_AJ_G0019702.1 mouse_genomes_project 12 52041545 52052259 - MGP_AJ_P0034756 Baz1a protein_coding protein_coding MGP_AJ_T0034757.1 MGP_AJ_G0019702.1 mouse_genomes_project 12 52041560 52066492 - MGP_AJ_P0034757 Baz1a protein_coding protein_coding MGP_AJ_T0000261.1 MGP_AJ_G0000205.1 mouse_genomes_project 12 113248789 113249223 - IG_V_pseudogene IG_V_pseudogene MGP_AJ_T0034471.1 MGP_AJ_G0019595.1 mouse_genomes_project 12 21549669 21630865 + MGP_AJ_P0034471 Taf1b protein_coding protein_coding MGP_AJ_T0034472.1 MGP_AJ_G0019595.1 mouse_genomes_project 12 21549711 21630658 + MGP_AJ_P0034472 Taf1b protein_coding unknown_likely_coding MGP_AJ_T0034590.1 MGP_AJ_G0019638.1 mouse_genomes_project 12 29936405 29969335 + MGP_AJ_P0034590 Nampt protein_coding protein_coding MGP_AJ_T0003371.1 MGP_AJ_G0003102.1 mouse_genomes_project 12 101086 107398 + Rab10os antisense antisense MGP_AJ_T0003372.1 MGP_AJ_G0003102.1 mouse_genomes_project 12 101108 104261 + Rab10os antisense antisense MGP_AJ_T0003373.1 MGP_AJ_G0003102.1 mouse_genomes_project 12 101108 117298 + Rab10os antisense antisense MGP_AJ_T0003374.1 MGP_AJ_G0003102.1 mouse_genomes_project 12 101778 117297 + Rab10os antisense antisense MGP_AJ_T0003375.1 MGP_AJ_G0003102.1 mouse_genomes_project 12 101819 105222 + Rab10os antisense antisense MGP_AJ_T0003376.1 MGP_AJ_G0003102.1 mouse_genomes_project 12 101902 116865 + Rab10os antisense antisense MGP_AJ_T0003377.1 MGP_AJ_G0003102.1 mouse_genomes_project 12 102598 116920 + Rab10os antisense antisense MGP_AJ_T0100676.1 MGP_AJ_G0038642.1 mouse_genomes_project 12 80208567 80208704 - Gm22149 snoRNA snoRNA MGP_AJ_T0035561.1 MGP_AJ_G0019957.1 mouse_genomes_project 12 93270237 93364850 + MGP_AJ_P0035561 Flrt2 protein_coding protein_coding MGP_AJ_T0035562.1 MGP_AJ_G0019957.1 mouse_genomes_project 12 93273401 93360741 + MGP_AJ_P0035562 Flrt2 protein_coding protein_coding MGP_AJ_T0003408.1 MGP_AJ_G0003126.1 mouse_genomes_project 12 80366451 80373087 - 1700085C21Rik antisense antisense MGP_AJ_T0035625.1 MGP_AJ_G0019976.1 mouse_genomes_project 12 98509776 98541278 - MGP_AJ_P0035625 Gpr68 protein_coding protein_coding MGP_AJ_T0035626.1 MGP_AJ_G0019976.1 mouse_genomes_project 12 98509779 98541261 - MGP_AJ_P0035626 Gpr68 protein_coding protein_coding MGP_AJ_T0035627.1 MGP_AJ_G0019976.1 mouse_genomes_project 12 98509779 98532610 - MGP_AJ_P0035627 Gpr68 protein_coding protein_coding MGP_AJ_T0035628.1 MGP_AJ_G0019976.1 mouse_genomes_project 12 98512410 98532584 - Gpr68 protein_coding processed_transcript MGP_AJ_T0035630.1 MGP_AJ_G0019976.1 mouse_genomes_project 12 98520764 98541278 - Gpr68 protein_coding processed_transcript MGP_AJ_T0035631.1 MGP_AJ_G0019976.1 mouse_genomes_project 12 98520952 98532610 - Gpr68 protein_coding processed_transcript MGP_AJ_T0035832.1 MGP_AJ_G0020059.1 mouse_genomes_project 12 106302308 106441990 + Eml1 protein_coding retained_intron MGP_AJ_T0035833.1 MGP_AJ_G0020059.1 mouse_genomes_project 12 106354283 106474612 + MGP_AJ_P0035833 Eml1 protein_coding protein_coding MGP_AJ_T0035834.1 MGP_AJ_G0020059.1 mouse_genomes_project 12 106354545 106472569 + MGP_AJ_P0035834 Eml1 protein_coding nonsense_mediated_decay MGP_AJ_T0035835.1 MGP_AJ_G0020059.1 mouse_genomes_project 12 106354662 106474621 + MGP_AJ_P0035835 Eml1 protein_coding protein_coding MGP_AJ_T0035836.1 MGP_AJ_G0020059.1 mouse_genomes_project 12 106404219 106474612 + Eml1 protein_coding processed_transcript MGP_AJ_T0035837.1 MGP_AJ_G0020059.1 mouse_genomes_project 12 106469818 106472464 + Eml1 protein_coding processed_transcript MGP_AJ_T0035838.1 MGP_AJ_G0020059.1 mouse_genomes_project 12 106469876 106474665 + Eml1 protein_coding processed_transcript MGP_AJ_T0009812.1 MGP_AJ_G0007934.1 mouse_genomes_project 12 84817683 84817759 + miRNA miRNA MGP_AJ_T0034620.1 MGP_AJ_G0019648.1 mouse_genomes_project 12 32136749 32138425 + MGP_AJ_P0034620 Prps1l1 protein_coding protein_coding MGP_AJ_T0035670.1 MGP_AJ_G0019990.1 mouse_genomes_project 12 100209057 100344129 - MGP_AJ_P0035670 Itpk1 protein_coding protein_coding MGP_AJ_T0035671.1 MGP_AJ_G0019990.1 mouse_genomes_project 12 100223513 100233306 - Itpk1 protein_coding processed_transcript MGP_AJ_T0035672.1 MGP_AJ_G0019990.1 mouse_genomes_project 12 100227143 100281444 - MGP_AJ_P0035672 Itpk1 protein_coding protein_coding MGP_AJ_T0035673.1 MGP_AJ_G0019990.1 mouse_genomes_project 12 100262605 100344227 - MGP_AJ_P0035673 Itpk1 protein_coding protein_coding MGP_AJ_T0035991.1 MGP_AJ_G0020105.1 mouse_genomes_project 12 110167342 110203550 + MGP_AJ_P0035991 Kif26a protein_coding protein_coding MGP_AJ_T0035992.1 MGP_AJ_G0020105.1 mouse_genomes_project 12 110201009 110202345 + Kif26a protein_coding processed_transcript MGP_AJ_T0035148.1 MGP_AJ_G0019842.1 mouse_genomes_project 12 76728747 76940219 + MGP_AJ_P0035148 Rad51b protein_coding protein_coding MGP_AJ_T0035149.1 MGP_AJ_G0019842.1 mouse_genomes_project 12 76728747 76758646 + MGP_AJ_P0035149 Rad51b protein_coding protein_coding MGP_AJ_T0034399.1 MGP_AJ_G0019572.1 mouse_genomes_project 12 10177496 10496034 + MGP_AJ_P0034399 Nbas protein_coding protein_coding MGP_AJ_T0012797.1 MGP_AJ_G0010892.1 mouse_genomes_project 12 808665 809184 - processed_pseudogene processed_pseudogene MGP_AJ_T0011327.1 MGP_AJ_G0009449.1 mouse_genomes_project 12 66267065 66267365 + Rn7s1 misc_RNA misc_RNA MGP_AJ_T0035089.1 MGP_AJ_G0019819.1 mouse_genomes_project 12 73740530 73788375 + MGP_AJ_P0035089 Plekhg3 protein_coding protein_coding MGP_AJ_T0035090.1 MGP_AJ_G0019819.1 mouse_genomes_project 12 73755998 73787744 + MGP_AJ_P0035090 Plekhg3 protein_coding unknown_likely_coding MGP_AJ_T0034634.1 MGP_AJ_G0019655.1 mouse_genomes_project 12 33246662 33306695 - MGP_AJ_P0034634 Bzw2 protein_coding protein_coding MGP_AJ_T0098391.1 MGP_AJ_G0036375.1 mouse_genomes_project 12 6345013 6345567 + pseudogene pseudogene MGP_AJ_T0098555.1 MGP_AJ_G0036539.1 mouse_genomes_project 12 25165063 25165201 - Gm25923 rRNA rRNA MGP_AJ_T0000091.1 MGP_AJ_G0000071.1 mouse_genomes_project 12 112540894 112541354 - MGP_AJ_P0000091 Ighv13-2 IG_V_gene IG_V_gene MGP_AJ_T0000092.1 MGP_AJ_G0000071.1 mouse_genomes_project 12 112540894 112541196 - MGP_AJ_P0000092 Ighv13-2 IG_V_gene IG_V_gene MGP_AJ_T0035775.1 MGP_AJ_G0020037.1 mouse_genomes_project 12 102803882 102812108 + MGP_AJ_P0035775 Glrx5 protein_coding protein_coding MGP_AJ_T0035769.1 MGP_AJ_G0020032.1 mouse_genomes_project 12 102234533 102237535 + MGP_AJ_P0035769 Gm1000 protein_coding protein_coding MGP_AJ_T0034615.1 MGP_AJ_G0019645.1 mouse_genomes_project 12 31240854 31468538 - MGP_AJ_P0034615 protein_coding unknown_likely_coding MGP_AJ_T0034616.1 MGP_AJ_G0019645.1 mouse_genomes_project 12 31438720 31440720 - MGP_AJ_P0034616 protein_coding protein_coding MGP_AJ_T0034867.1 MGP_AJ_G0019742.1 mouse_genomes_project 12 63580634 63994148 - MGP_AJ_P0034867 protein_coding unknown_likely_coding MGP_AJ_T0034868.1 MGP_AJ_G0019742.1 mouse_genomes_project 12 63580634 63994138 - MGP_AJ_P0034868 protein_coding unknown_likely_coding MGP_AJ_T0034869.1 MGP_AJ_G0019742.1 mouse_genomes_project 12 63584144 64353506 - MGP_AJ_P0034869 protein_coding protein_coding MGP_AJ_T0034870.1 MGP_AJ_G0019742.1 mouse_genomes_project 12 63585212 63585635 - MGP_AJ_P0034870 protein_coding protein_coding MGP_AJ_T0034871.1 MGP_AJ_G0019742.1 mouse_genomes_project 12 63585758 64352188 - MGP_AJ_P0034871 protein_coding protein_coding MGP_AJ_T0034872.1 MGP_AJ_G0019742.1 mouse_genomes_project 12 63586045 64352169 - MGP_AJ_P0034872 protein_coding nonsense_mediated_decay MGP_AJ_T0034873.1 MGP_AJ_G0019742.1 mouse_genomes_project 12 63596198 63601492 - protein_coding retained_intron MGP_AJ_T0034874.1 MGP_AJ_G0019742.1 mouse_genomes_project 12 63736822 63747319 - protein_coding processed_transcript MGP_AJ_T0034875.1 MGP_AJ_G0019742.1 mouse_genomes_project 12 63806817 63950392 - protein_coding processed_transcript MGP_AJ_T0034876.1 MGP_AJ_G0019742.1 mouse_genomes_project 12 64326512 64353499 - protein_coding processed_transcript MGP_AJ_T0034877.1 MGP_AJ_G0019742.1 mouse_genomes_project 12 64343268 64353338 - protein_coding processed_transcript MGP_AJ_T0035942.1 MGP_AJ_G0020092.1 mouse_genomes_project 12 109589709 109678683 + MGP_AJ_P0035942 Mark3 protein_coding protein_coding MGP_AJ_T0035943.1 MGP_AJ_G0020092.1 mouse_genomes_project 12 109589709 109678683 + MGP_AJ_P0035943 Mark3 protein_coding protein_coding MGP_AJ_T0098560.1 MGP_AJ_G0036544.1 mouse_genomes_project 12 53149516 53149636 - Gm23799 rRNA rRNA MGP_AJ_T0034619.1 MGP_AJ_G0019647.1 mouse_genomes_project 12 32013720 32014776 - MGP_AJ_P0034619 4921508M14Rik protein_coding protein_coding MGP_AJ_T0100662.1 MGP_AJ_G0038628.1 mouse_genomes_project 12 53652344 53652476 + Gm25760 snoRNA snoRNA MGP_AJ_T0009835.1 MGP_AJ_G0007957.1 mouse_genomes_project 12 107509244 107509311 + Mir540 miRNA miRNA MGP_AJ_T0009818.1 MGP_AJ_G0007940.1 mouse_genomes_project 12 97629095 97629173 - Gm23291 miRNA miRNA MGP_AJ_T0034957.1 MGP_AJ_G0019772.1 mouse_genomes_project 12 68156234 68228113 + MGP_AJ_P0034957 Arid4a protein_coding protein_coding MGP_AJ_T0034958.1 MGP_AJ_G0019772.1 mouse_genomes_project 12 68156273 68208435 + Arid4a protein_coding processed_transcript MGP_AJ_T0034959.1 MGP_AJ_G0019772.1 mouse_genomes_project 12 68156952 68188182 + MGP_AJ_P0034959 Arid4a protein_coding protein_coding MGP_AJ_T0034960.1 MGP_AJ_G0019772.1 mouse_genomes_project 12 68189183 68216533 + MGP_AJ_P0034960 Arid4a protein_coding protein_coding MGP_AJ_T0011337.1 MGP_AJ_G0009459.1 mouse_genomes_project 12 100767290 100767452 + Gm27976 misc_RNA misc_RNA MGP_AJ_T0012825.1 MGP_AJ_G0010920.1 mouse_genomes_project 12 66248448 66249085 - processed_pseudogene processed_pseudogene MGP_AJ_T0017314.1 MGP_AJ_G0015215.1 mouse_genomes_project 12 107526750 107530296 + Rian processed_transcript lincRNA MGP_AJ_T0017315.1 MGP_AJ_G0015215.1 mouse_genomes_project 12 107526755 107568148 + Rian processed_transcript lincRNA MGP_AJ_T0017316.1 MGP_AJ_G0015215.1 mouse_genomes_project 12 107526856 107549942 + Rian processed_transcript lincRNA MGP_AJ_T0017317.1 MGP_AJ_G0015215.1 mouse_genomes_project 12 107543194 107569093 + Rian processed_transcript lincRNA MGP_AJ_T0017318.1 MGP_AJ_G0015215.1 mouse_genomes_project 12 107543194 107556994 + Rian processed_transcript lincRNA MGP_AJ_T0017319.1 MGP_AJ_G0015215.1 mouse_genomes_project 12 107548004 107568214 + Rian processed_transcript lincRNA MGP_AJ_T0017320.1 MGP_AJ_G0015215.1 mouse_genomes_project 12 107555566 107559037 + Rian processed_transcript lincRNA MGP_AJ_T0017321.1 MGP_AJ_G0015215.1 mouse_genomes_project 12 107556720 107566226 + Rian processed_transcript lincRNA MGP_AJ_T0017322.1 MGP_AJ_G0015215.1 mouse_genomes_project 12 107556964 107569016 + Rian processed_transcript lincRNA MGP_AJ_T0017323.1 MGP_AJ_G0015215.1 mouse_genomes_project 12 107566703 107568195 + Rian processed_transcript TEC MGP_AJ_T0017324.1 MGP_AJ_G0015215.1 mouse_genomes_project 12 107568893 107586437 + Rian processed_transcript lincRNA MGP_AJ_T0017325.1 MGP_AJ_G0015215.1 mouse_genomes_project 12 107568914 107578691 + Rian processed_transcript lincRNA MGP_AJ_T0017326.1 MGP_AJ_G0015215.1 mouse_genomes_project 12 107569393 107584528 + Rian processed_transcript lincRNA MGP_AJ_T0017327.1 MGP_AJ_G0015215.1 mouse_genomes_project 12 107572749 107573929 + Rian processed_transcript lincRNA MGP_AJ_T0017328.1 MGP_AJ_G0015215.1 mouse_genomes_project 12 107573646 107579551 + Rian processed_transcript lincRNA MGP_AJ_T0017329.1 MGP_AJ_G0015215.1 mouse_genomes_project 12 107574258 107585742 + Rian processed_transcript lincRNA MGP_AJ_T0017330.1 MGP_AJ_G0015215.1 mouse_genomes_project 12 107574262 107579572 + Rian processed_transcript lincRNA MGP_AJ_T0017331.1 MGP_AJ_G0015215.1 mouse_genomes_project 12 107574592 107584474 + Rian processed_transcript lincRNA MGP_AJ_T0017332.1 MGP_AJ_G0015215.1 mouse_genomes_project 12 107582008 107583851 + Rian processed_transcript TEC MGP_AJ_T0035618.1 MGP_AJ_G0019975.1 mouse_genomes_project 12 98423432 98505714 + MGP_AJ_P0035618 9030617O03Rik protein_coding protein_coding MGP_AJ_T0035619.1 MGP_AJ_G0019975.1 mouse_genomes_project 12 98423453 98505458 + MGP_AJ_P0035619 9030617O03Rik protein_coding protein_coding MGP_AJ_T0035620.1 MGP_AJ_G0019975.1 mouse_genomes_project 12 98423461 98530067 + MGP_AJ_P0035620 9030617O03Rik protein_coding protein_coding MGP_AJ_T0035621.1 MGP_AJ_G0019975.1 mouse_genomes_project 12 98423470 98505458 + MGP_AJ_P0035621 9030617O03Rik protein_coding protein_coding MGP_AJ_T0035622.1 MGP_AJ_G0019975.1 mouse_genomes_project 12 98423511 98474640 + MGP_AJ_P0035622 9030617O03Rik protein_coding nonsense_mediated_decay MGP_AJ_T0035623.1 MGP_AJ_G0019975.1 mouse_genomes_project 12 98431287 98505452 + MGP_AJ_P0035623 9030617O03Rik protein_coding protein_coding MGP_AJ_T0035624.1 MGP_AJ_G0019975.1 mouse_genomes_project 12 98500276 98508503 + MGP_AJ_P0035624 9030617O03Rik protein_coding protein_coding MGP_AJ_T0035629.1 MGP_AJ_G0019975.1 mouse_genomes_project 12 98518960 98528575 + 9030617O03Rik protein_coding processed_transcript MGP_AJ_T0034726.1 MGP_AJ_G0019688.1 mouse_genomes_project 12 48717895 48765499 + MGP_AJ_P0034726 Ap4s1 protein_coding protein_coding MGP_AJ_T0098568.1 MGP_AJ_G0036552.1 mouse_genomes_project 12 101875137 101875245 + Gm23289 rRNA rRNA MGP_AJ_T0034780.1 MGP_AJ_G0019714.1 mouse_genomes_project 12 53632542 53635673 - MGP_AJ_P0034780 Nkx2-1 protein_coding protein_coding MGP_AJ_T0034781.1 MGP_AJ_G0019714.1 mouse_genomes_project 12 53632542 53637568 - MGP_AJ_P0034781 Nkx2-1 protein_coding protein_coding MGP_AJ_T0003402.1 MGP_AJ_G0003120.1 mouse_genomes_project 12 71392333 71404517 - Gm29587 antisense antisense MGP_AJ_T0000249.1 MGP_AJ_G0000193.1 mouse_genomes_project 12 112673866 112674168 - IG_V_pseudogene IG_V_pseudogene MGP_AJ_T0034737.1 MGP_AJ_G0019694.1 mouse_genomes_project 12 49519649 49582909 + MGP_AJ_P0034737 Arhgap5 protein_coding unknown_likely_coding MGP_AJ_T0000109.1 MGP_AJ_G0000085.1 mouse_genomes_project 12 112773968 112774402 - MGP_AJ_P0000109 Ighv1-9 IG_V_gene IG_V_gene MGP_AJ_T0000110.1 MGP_AJ_G0000085.1 mouse_genomes_project 12 112773968 112774402 - MGP_AJ_P0000110 Ighv1-9 IG_V_gene IG_V_gene MGP_AJ_T0034370.1 MGP_AJ_G0019556.1 mouse_genomes_project 12 5834413 5851123 + MGP_AJ_P0034370 Laptm4a protein_coding protein_coding MGP_AJ_T0034372.1 MGP_AJ_G0019558.1 mouse_genomes_project 12 5885388 5943061 + MGP_AJ_P0034372 Wdr35 protein_coding protein_coding MGP_AJ_T0034373.1 MGP_AJ_G0019558.1 mouse_genomes_project 12 5885507 5903008 + Wdr35 protein_coding retained_intron MGP_AJ_T0034374.1 MGP_AJ_G0019558.1 mouse_genomes_project 12 5885507 5903013 + MGP_AJ_P0034374 Wdr35 protein_coding nonsense_mediated_decay MGP_AJ_T0034375.1 MGP_AJ_G0019558.1 mouse_genomes_project 12 5885543 5943060 + MGP_AJ_P0034375 Wdr35 protein_coding protein_coding MGP_AJ_T0034376.1 MGP_AJ_G0019558.1 mouse_genomes_project 12 5885555 5937199 + Wdr35 protein_coding retained_intron MGP_AJ_T0034377.1 MGP_AJ_G0019558.1 mouse_genomes_project 12 5886365 5897012 + Wdr35 protein_coding retained_intron MGP_AJ_T0034378.1 MGP_AJ_G0019558.1 mouse_genomes_project 12 5936805 5938681 + Wdr35 protein_coding retained_intron MGP_AJ_T0034438.1 MGP_AJ_G0019585.1 mouse_genomes_project 12 14191553 14232331 - MGP_AJ_P0034438 Atp6v1c2 protein_coding protein_coding MGP_AJ_T0034439.1 MGP_AJ_G0019585.1 mouse_genomes_project 12 14191554 14232322 - MGP_AJ_P0034439 Atp6v1c2 protein_coding protein_coding MGP_AJ_T0034440.1 MGP_AJ_G0019585.1 mouse_genomes_project 12 14191554 14232284 - MGP_AJ_P0034440 Atp6v1c2 protein_coding nonsense_mediated_decay MGP_AJ_T0034441.1 MGP_AJ_G0019585.1 mouse_genomes_project 12 14191555 14215215 - MGP_AJ_P0034441 Atp6v1c2 protein_coding protein_coding MGP_AJ_T0034442.1 MGP_AJ_G0019585.1 mouse_genomes_project 12 14191691 14231085 - MGP_AJ_P0034442 Atp6v1c2 protein_coding unknown_likely_coding MGP_AJ_T0034443.1 MGP_AJ_G0019585.1 mouse_genomes_project 12 14204617 14237034 - MGP_AJ_P0034443 Atp6v1c2 protein_coding protein_coding MGP_AJ_T0034444.1 MGP_AJ_G0019585.1 mouse_genomes_project 12 14215102 14232349 - MGP_AJ_P0034444 Atp6v1c2 protein_coding protein_coding MGP_AJ_T0034445.1 MGP_AJ_G0019585.1 mouse_genomes_project 12 14215146 14237045 - MGP_AJ_P0034445 Atp6v1c2 protein_coding protein_coding MGP_AJ_T0017336.1 MGP_AJ_G0015218.1 mouse_genomes_project 12 115631036 115637745 - Gm10421 processed_transcript antisense MGP_AJ_T0017337.1 MGP_AJ_G0015218.1 mouse_genomes_project 12 115631878 115637799 - Gm10421 processed_transcript retained_intron MGP_AJ_T0017338.1 MGP_AJ_G0015218.1 mouse_genomes_project 12 115637619 115638181 - Gm10421 processed_transcript antisense MGP_AJ_T0012842.1 MGP_AJ_G0010937.1 mouse_genomes_project 12 84614132 84614247 + processed_pseudogene processed_pseudogene MGP_AJ_T0000860.1 MGP_AJ_G0000795.1 mouse_genomes_project 12 80393764 80395075 - TEC TEC MGP_AJ_T0012826.1 MGP_AJ_G0010921.1 mouse_genomes_project 12 68987479 68988439 - processed_pseudogene processed_pseudogene MGP_AJ_T0099395.1 MGP_AJ_G0037361.1 mouse_genomes_project 12 18201347 18201446 + Gm22766 snRNA snRNA MGP_AJ_T0011325.1 MGP_AJ_G0009447.1 mouse_genomes_project 12 53364188 53364473 - Gm24685 misc_RNA misc_RNA MGP_AJ_T0035053.1 MGP_AJ_G0019809.1 mouse_genomes_project 12 73020381 73083261 + MGP_AJ_P0035053 Syne2 protein_coding protein_coding MGP_AJ_T0035054.1 MGP_AJ_G0019809.1 mouse_genomes_project 12 73020565 73318470 + MGP_AJ_P0035054 Syne2 protein_coding protein_coding MGP_AJ_T0035055.1 MGP_AJ_G0019809.1 mouse_genomes_project 12 73020565 73318454 + MGP_AJ_P0035055 Syne2 protein_coding protein_coding MGP_AJ_T0035056.1 MGP_AJ_G0019809.1 mouse_genomes_project 12 73020570 73093782 + Syne2 protein_coding retained_intron MGP_AJ_T0035057.1 MGP_AJ_G0019809.1 mouse_genomes_project 12 73020576 73111600 + MGP_AJ_P0035057 Syne2 protein_coding protein_coding MGP_AJ_T0035058.1 MGP_AJ_G0019809.1 mouse_genomes_project 12 73020597 73108625 + Syne2 protein_coding retained_intron MGP_AJ_T0035059.1 MGP_AJ_G0019809.1 mouse_genomes_project 12 73054896 73083083 + MGP_AJ_P0035059 Syne2 protein_coding protein_coding MGP_AJ_T0035060.1 MGP_AJ_G0019809.1 mouse_genomes_project 12 73111940 73116610 + Syne2 protein_coding retained_intron MGP_AJ_T0035061.1 MGP_AJ_G0019809.1 mouse_genomes_project 12 73228744 73234260 + MGP_AJ_P0035061 Syne2 protein_coding protein_coding MGP_AJ_T0035062.1 MGP_AJ_G0019809.1 mouse_genomes_project 12 73238056 73318464 + MGP_AJ_P0035062 Syne2 protein_coding protein_coding MGP_AJ_T0035063.1 MGP_AJ_G0019809.1 mouse_genomes_project 12 73255018 73318454 + MGP_AJ_P0035063 Syne2 protein_coding protein_coding MGP_AJ_T0035064.1 MGP_AJ_G0019809.1 mouse_genomes_project 12 73266142 73272985 + Syne2 protein_coding retained_intron MGP_AJ_T0035065.1 MGP_AJ_G0019809.1 mouse_genomes_project 12 73279038 73301990 + MGP_AJ_P0035065 Syne2 protein_coding protein_coding MGP_AJ_T0035066.1 MGP_AJ_G0019809.1 mouse_genomes_project 12 73289209 73302600 + MGP_AJ_P0035066 Syne2 protein_coding protein_coding MGP_AJ_T0035067.1 MGP_AJ_G0019809.1 mouse_genomes_project 12 73289492 73305535 + MGP_AJ_P0035067 Syne2 protein_coding nonsense_mediated_decay MGP_AJ_T0035068.1 MGP_AJ_G0019809.1 mouse_genomes_project 12 73295313 73318470 + MGP_AJ_P0035068 Syne2 protein_coding nonsense_mediated_decay MGP_AJ_T0035069.1 MGP_AJ_G0019809.1 mouse_genomes_project 12 73308454 73313546 + Syne2 protein_coding retained_intron MGP_AJ_T0035928.1 MGP_AJ_G0020089.1 mouse_genomes_project 12 109451358 109464527 + MGP_AJ_P0035928 Tnfaip2 protein_coding protein_coding MGP_AJ_T0035929.1 MGP_AJ_G0020089.1 mouse_genomes_project 12 109451547 109464187 + MGP_AJ_P0035929 Tnfaip2 protein_coding protein_coding MGP_AJ_T0035930.1 MGP_AJ_G0020089.1 mouse_genomes_project 12 109451551 109464187 + Tnfaip2 protein_coding retained_intron MGP_AJ_T0035931.1 MGP_AJ_G0020089.1 mouse_genomes_project 12 109451551 109457476 + MGP_AJ_P0035931 Tnfaip2 protein_coding nonsense_mediated_decay MGP_AJ_T0035932.1 MGP_AJ_G0020089.1 mouse_genomes_project 12 109453213 109454401 + MGP_AJ_P0035932 Tnfaip2 protein_coding protein_coding MGP_AJ_T0035933.1 MGP_AJ_G0020089.1 mouse_genomes_project 12 109453887 109463334 + MGP_AJ_P0035933 Tnfaip2 protein_coding nonsense_mediated_decay MGP_AJ_T0035934.1 MGP_AJ_G0020089.1 mouse_genomes_project 12 109454973 109463334 + MGP_AJ_P0035934 Tnfaip2 protein_coding nonsense_mediated_decay MGP_AJ_T0035935.1 MGP_AJ_G0020089.1 mouse_genomes_project 12 109457023 109458200 + Tnfaip2 protein_coding retained_intron MGP_AJ_T0035936.1 MGP_AJ_G0020089.1 mouse_genomes_project 12 109459034 109460986 + Tnfaip2 protein_coding retained_intron MGP_AJ_T0035937.1 MGP_AJ_G0020089.1 mouse_genomes_project 12 109459389 109463268 + MGP_AJ_P0035937 Tnfaip2 protein_coding nonsense_mediated_decay MGP_AJ_T0035938.1 MGP_AJ_G0020089.1 mouse_genomes_project 12 109460035 109463135 + Tnfaip2 protein_coding retained_intron MGP_AJ_T0100646.1 MGP_AJ_G0038612.1 mouse_genomes_project 12 24731924 24732049 + Gm24326 snoRNA snoRNA MGP_AJ_T0009826.1 MGP_AJ_G0007948.1 mouse_genomes_project 12 106655431 106655508 - Gm23872 miRNA miRNA MGP_AJ_T0100709.1 MGP_AJ_G0038675.1 mouse_genomes_project 12 109550922 109551049 + Snora28 snoRNA snoRNA MGP_AJ_T0009815.1 MGP_AJ_G0007937.1 mouse_genomes_project 12 87094669 87094735 + Gm23989 miRNA miRNA MGP_AJ_T0000256.1 MGP_AJ_G0000200.1 mouse_genomes_project 12 112820243 112820728 - IG_V_pseudogene IG_V_pseudogene MGP_AJ_T0000853.1 MGP_AJ_G0000788.1 mouse_genomes_project 12 9499777 9500310 + TEC TEC MGP_AJ_T0035157.1 MGP_AJ_G0019847.1 mouse_genomes_project 12 77956471 78043280 + MGP_AJ_P0035157 Galnt16 protein_coding protein_coding MGP_AJ_T0100695.1 MGP_AJ_G0038661.1 mouse_genomes_project 12 107578308 107578380 + Gm26922 snoRNA snoRNA MGP_AJ_T0034758.1 MGP_AJ_G0019703.1 mouse_genomes_project 12 52052480 52052852 - MGP_AJ_P0034758 Gm20403 protein_coding protein_coding MGP_AJ_T0034379.1 MGP_AJ_G0019559.1 mouse_genomes_project 12 5944200 5950584 + MGP_AJ_P0034379 Ttc32 protein_coding protein_coding MGP_AJ_T0009856.1 MGP_AJ_G0007978.1 mouse_genomes_project 12 107637676 107637737 + Mir380 miRNA miRNA MGP_AJ_T0034853.1 MGP_AJ_G0019736.1 mouse_genomes_project 12 62065310 62126982 + MGP_AJ_P0034853 Fam179b protein_coding protein_coding MGP_AJ_T0034854.1 MGP_AJ_G0019736.1 mouse_genomes_project 12 62065545 62126988 + MGP_AJ_P0034854 Fam179b protein_coding unknown_likely_coding MGP_AJ_T0000265.1 MGP_AJ_G0000209.1 mouse_genomes_project 12 114375071 114375360 - IG_V_pseudogene IG_V_pseudogene MGP_AJ_T0006462.1 MGP_AJ_G0005382.1 mouse_genomes_project 12 104858889 104861535 - Gm16087 lincRNA lincRNA MGP_AJ_T0006410.1 MGP_AJ_G0005341.1 mouse_genomes_project 12 46409689 46427221 + 3110039M20Rik lincRNA lincRNA MGP_AJ_T0006411.1 MGP_AJ_G0005341.1 mouse_genomes_project 12 46410696 46426999 + 3110039M20Rik lincRNA lincRNA MGP_AJ_T0034779.1 MGP_AJ_G0019713.1 mouse_genomes_project 12 53428221 53445810 - MGP_AJ_P0034779 Mbip protein_coding protein_coding MGP_AJ_T0009834.1 MGP_AJ_G0007956.1 mouse_genomes_project 12 107508977 107509038 - Mir3544 miRNA miRNA MGP_AJ_T0035180.1 MGP_AJ_G0019856.1 mouse_genomes_project 12 78648963 78785985 - MGP_AJ_P0035180 Slc8a3 protein_coding protein_coding MGP_AJ_T0035181.1 MGP_AJ_G0019856.1 mouse_genomes_project 12 78649326 78785780 - MGP_AJ_P0035181 Slc8a3 protein_coding protein_coding MGP_AJ_T0035182.1 MGP_AJ_G0019856.1 mouse_genomes_project 12 78650496 78786001 - MGP_AJ_P0035182 Slc8a3 protein_coding protein_coding MGP_AJ_T0035183.1 MGP_AJ_G0019856.1 mouse_genomes_project 12 78653447 78747279 - MGP_AJ_P0035183 Slc8a3 protein_coding protein_coding MGP_AJ_T0035184.1 MGP_AJ_G0019856.1 mouse_genomes_project 12 78665075 78786001 - Slc8a3 protein_coding retained_intron MGP_AJ_T0100681.1 MGP_AJ_G0038647.1 mouse_genomes_project 12 99885659 99885875 - Gm25203 snoRNA snoRNA MGP_AJ_T0035789.1 MGP_AJ_G0020045.1 mouse_genomes_project 12 103429305 103458951 + MGP_AJ_P0035789 Bdkrb2 protein_coding protein_coding MGP_AJ_T0098566.1 MGP_AJ_G0036550.1 mouse_genomes_project 12 88481798 88481915 + n-R5s65 rRNA rRNA MGP_AJ_T0000244.1 MGP_AJ_G0000188.1 mouse_genomes_project 12 112466514 112466808 - IG_V_pseudogene IG_V_pseudogene MGP_AJ_T0035337.1 MGP_AJ_G0019893.1 mouse_genomes_project 12 81893050 81917974 + MGP_AJ_P0035337 Bbof1 protein_coding protein_coding MGP_AJ_T0035338.1 MGP_AJ_G0019893.1 mouse_genomes_project 12 81897286 81912615 + MGP_AJ_P0035338 Bbof1 protein_coding protein_coding MGP_AJ_T0035340.1 MGP_AJ_G0019893.1 mouse_genomes_project 12 81904090 81914574 + MGP_AJ_P0035340 Bbof1 protein_coding nonsense_mediated_decay MGP_AJ_T0035076.1 MGP_AJ_G0019813.1 mouse_genomes_project 12 73528353 73537458 + MGP_AJ_P0035076 Akap5 protein_coding protein_coding MGP_AJ_T0035077.1 MGP_AJ_G0019813.1 mouse_genomes_project 12 73528353 73537456 + MGP_AJ_P0035077 Akap5 protein_coding protein_coding MGP_AJ_T0035078.1 MGP_AJ_G0019813.1 mouse_genomes_project 12 73528367 73533359 + MGP_AJ_P0035078 Akap5 protein_coding protein_coding MGP_AJ_T0034997.1 MGP_AJ_G0019784.1 mouse_genomes_project 12 69675816 69716452 + MGP_AJ_P0034997 Pcnx4 protein_coding protein_coding MGP_AJ_T0009893.1 MGP_AJ_G0008015.1 mouse_genomes_project 12 107669593 107669674 + Mir410 miRNA miRNA MGP_AJ_T0009898.1 MGP_AJ_G0008020.1 mouse_genomes_project 12 110129431 110129491 - Mir3073b miRNA miRNA MGP_AJ_T0034367.1 MGP_AJ_G0019555.1 mouse_genomes_project 12 5678829 5701588 + MGP_AJ_P0034367 Sdc1 protein_coding unknown_likely_coding MGP_AJ_T0034368.1 MGP_AJ_G0019555.1 mouse_genomes_project 12 5679206 5697760 + Sdc1 protein_coding retained_intron MGP_AJ_T0034369.1 MGP_AJ_G0019555.1 mouse_genomes_project 12 5679685 5698325 + Sdc1 protein_coding processed_transcript MGP_AJ_T0006432.1 MGP_AJ_G0005356.1 mouse_genomes_project 12 78333191 78335187 - Gm26545 lincRNA lincRNA MGP_AJ_T0035540.1 MGP_AJ_G0019953.1 mouse_genomes_project 12 89054907 89171256 + MGP_AJ_P0035540 Tshr protein_coding protein_coding MGP_AJ_T0035541.1 MGP_AJ_G0019953.1 mouse_genomes_project 12 89054913 89153269 + MGP_AJ_P0035541 Tshr protein_coding protein_coding MGP_AJ_T0035542.1 MGP_AJ_G0019953.1 mouse_genomes_project 12 89168812 89170303 + MGP_AJ_P0035542 Tshr protein_coding protein_coding MGP_AJ_T0006456.1 MGP_AJ_G0005379.1 mouse_genomes_project 12 104451568 104468965 + Gm17033 lincRNA lincRNA MGP_AJ_T0009878.1 MGP_AJ_G0008000.1 mouse_genomes_project 12 107654693 107654816 + Gm27379 miRNA miRNA MGP_AJ_T0006438.1 MGP_AJ_G0005362.1 mouse_genomes_project 12 83808573 83823825 - 4732487G21Rik lincRNA lincRNA MGP_AJ_T0035684.1 MGP_AJ_G0019999.1 mouse_genomes_project 12 100586007 100823377 + MGP_AJ_P0035684 Unc79 protein_coding protein_coding MGP_AJ_T0035685.1 MGP_AJ_G0019999.1 mouse_genomes_project 12 100586702 100822989 + MGP_AJ_P0035685 Unc79 protein_coding protein_coding MGP_AJ_T0035686.1 MGP_AJ_G0019999.1 mouse_genomes_project 12 100628553 100822989 + MGP_AJ_P0035686 Unc79 protein_coding unknown_likely_coding MGP_AJ_T0035687.1 MGP_AJ_G0019999.1 mouse_genomes_project 12 100638982 100643374 + Unc79 protein_coding retained_intron MGP_AJ_T0035688.1 MGP_AJ_G0019999.1 mouse_genomes_project 12 100639753 100697768 + MGP_AJ_P0035688 Unc79 protein_coding protein_coding MGP_AJ_T0035689.1 MGP_AJ_G0019999.1 mouse_genomes_project 12 100639804 100823374 + MGP_AJ_P0035689 Unc79 protein_coding protein_coding MGP_AJ_T0035690.1 MGP_AJ_G0019999.1 mouse_genomes_project 12 100639861 100823441 + MGP_AJ_P0035690 Unc79 protein_coding protein_coding MGP_AJ_T0035691.1 MGP_AJ_G0019999.1 mouse_genomes_project 12 100697418 100709100 + Unc79 protein_coding retained_intron MGP_AJ_T0035692.1 MGP_AJ_G0019999.1 mouse_genomes_project 12 100734197 100750377 + MGP_AJ_P0035692 Unc79 protein_coding protein_coding MGP_AJ_T0035693.1 MGP_AJ_G0019999.1 mouse_genomes_project 12 100773639 100785297 + MGP_AJ_P0035693 Unc79 protein_coding nonsense_mediated_decay MGP_AJ_T0034898.1 MGP_AJ_G0019754.1 mouse_genomes_project 12 66492297 66496128 + MGP_AJ_P0034898 Arf6 protein_coding protein_coding MGP_AJ_T0006412.1 MGP_AJ_G0005342.1 mouse_genomes_project 12 46496425 46500297 - 1810007C17Rik lincRNA lincRNA MGP_AJ_T0100683.1 MGP_AJ_G0038649.1 mouse_genomes_project 12 102179633 102179761 - Gm24334 snoRNA snoRNA MGP_AJ_T0006409.1 MGP_AJ_G0005340.1 mouse_genomes_project 12 34249155 34257441 - Gm29007 lincRNA lincRNA MGP_AJ_T0000081.1 MGP_AJ_G0000065.1 mouse_genomes_project 12 112438973 112439514 - MGP_AJ_P0000081 Ighv7-4 IG_V_gene IG_V_gene MGP_AJ_T0000082.1 MGP_AJ_G0000065.1 mouse_genomes_project 12 112438973 112439440 - MGP_AJ_P0000082 Ighv7-4 IG_V_gene IG_V_gene MGP_AJ_T0035029.1 MGP_AJ_G0019795.1 mouse_genomes_project 12 70521620 70529029 - MGP_AJ_P0035029 D830013O20Rik protein_coding protein_coding MGP_AJ_T0035755.1 MGP_AJ_G0020022.1 mouse_genomes_project 12 101894244 101905794 + MGP_AJ_P0035755 Serpina3b protein_coding protein_coding MGP_AJ_T0000858.1 MGP_AJ_G0000793.1 mouse_genomes_project 12 57962695 57973293 + TEC TEC MGP_AJ_T0009813.1 MGP_AJ_G0007935.1 mouse_genomes_project 12 84990784 84990863 - Mir3068 miRNA miRNA MGP_AJ_T0000253.1 MGP_AJ_G0000197.1 mouse_genomes_project 12 112747910 112748176 - IG_V_pseudogene IG_V_pseudogene MGP_AJ_T0035818.1 MGP_AJ_G0020052.1 mouse_genomes_project 12 105405355 105406360 + MGP_AJ_P0035818 3110018I06Rik protein_coding protein_coding MGP_AJ_T0099427.1 MGP_AJ_G0037393.1 mouse_genomes_project 12 84182342 84182449 + Gm22004 snRNA snRNA MGP_AJ_T0100680.1 MGP_AJ_G0038646.1 mouse_genomes_project 12 89205884 89206027 - Gm25776 snoRNA snoRNA MGP_AJ_T0035212.1 MGP_AJ_G0019865.1 mouse_genomes_project 12 79334011 79474415 + MGP_AJ_P0035212 Pcnx protein_coding protein_coding MGP_AJ_T0035213.1 MGP_AJ_G0019865.1 mouse_genomes_project 12 79334353 79474417 + MGP_AJ_P0035213 Pcnx protein_coding unknown_likely_coding MGP_AJ_T0011336.1 MGP_AJ_G0009458.1 mouse_genomes_project 12 93845486 93845783 - Gm26480 misc_RNA misc_RNA MGP_AJ_T0009800.1 MGP_AJ_G0007922.1 mouse_genomes_project 12 66672898 66673007 - Gm23018 miRNA miRNA MGP_AJ_T0034421.1 MGP_AJ_G0019580.1 mouse_genomes_project 12 13800352 13894653 + MGP_AJ_P0034421 Rock2 protein_coding protein_coding MGP_AJ_T0098570.1 MGP_AJ_G0036554.1 mouse_genomes_project 12 116058791 116058897 + Gm24741 rRNA rRNA MGP_AJ_T0035990.1 MGP_AJ_G0020104.1 mouse_genomes_project 12 110126831 110148732 + MGP_AJ_P0035990 Aspg protein_coding protein_coding MGP_AJ_T0000254.1 MGP_AJ_G0000198.1 mouse_genomes_project 12 112781691 112782129 - IG_V_pseudogene IG_V_pseudogene MGP_AJ_T0035012.1 MGP_AJ_G0019790.1 mouse_genomes_project 12 70200033 70202954 - Six1 protein_coding processed_transcript MGP_AJ_T0035013.1 MGP_AJ_G0019790.1 mouse_genomes_project 12 70201965 70207318 - MGP_AJ_P0035013 Six1 protein_coding protein_coding MGP_AJ_T0035014.1 MGP_AJ_G0019790.1 mouse_genomes_project 12 70203669 70214025 - Six1 protein_coding processed_transcript MGP_AJ_T0035015.1 MGP_AJ_G0019790.1 mouse_genomes_project 12 70203912 70205430 - Six1 protein_coding processed_transcript MGP_AJ_T0034242.1 MGP_AJ_G0019523.1 mouse_genomes_project 12 227085 271895 + MGP_AJ_P0034242 Kif3c protein_coding protein_coding MGP_AJ_T0006463.1 MGP_AJ_G0005383.1 mouse_genomes_project 12 104988536 105009839 - Gm16086 lincRNA lincRNA MGP_AJ_T0012827.1 MGP_AJ_G0010922.1 mouse_genomes_project 12 71133208 71133514 + processed_pseudogene processed_pseudogene MGP_AJ_T0034924.1 MGP_AJ_G0019764.1 mouse_genomes_project 12 67137905 67229988 - MGP_AJ_P0034924 Nin protein_coding protein_coding MGP_AJ_T0034925.1 MGP_AJ_G0019764.1 mouse_genomes_project 12 67145200 67230009 - MGP_AJ_P0034925 Nin protein_coding protein_coding MGP_AJ_T0034926.1 MGP_AJ_G0019764.1 mouse_genomes_project 12 67145201 67239078 - MGP_AJ_P0034926 Nin protein_coding protein_coding MGP_AJ_T0034927.1 MGP_AJ_G0019764.1 mouse_genomes_project 12 67145221 67239073 - MGP_AJ_P0034927 Nin protein_coding protein_coding MGP_AJ_T0034928.1 MGP_AJ_G0019764.1 mouse_genomes_project 12 67151871 67238554 - MGP_AJ_P0034928 Nin protein_coding unknown_likely_coding MGP_AJ_T0035284.1 MGP_AJ_G0019880.1 mouse_genomes_project 12 81446217 81453518 + MGP_AJ_P0035284 protein_coding protein_coding MGP_AJ_T0035134.1 MGP_AJ_G0019837.1 mouse_genomes_project 12 76554545 76580925 + MGP_AJ_P0035134 Arg2 protein_coding protein_coding MGP_AJ_T0035116.1 MGP_AJ_G0019827.1 mouse_genomes_project 12 74832907 74834805 - MGP_AJ_P0035116 protein_coding protein_coding MGP_AJ_T0000023.1 MGP_AJ_G0000016.1 mouse_genomes_project 12 111360008 111362175 + IG_C_pseudogene IG_C_pseudogene MGP_AJ_T0034393.1 MGP_AJ_G0019569.1 mouse_genomes_project 12 9170620 9280693 + MGP_AJ_P0034393 Fam49a protein_coding protein_coding MGP_AJ_T0034394.1 MGP_AJ_G0019569.1 mouse_genomes_project 12 9170620 9280693 + MGP_AJ_P0034394 Fam49a protein_coding protein_coding MGP_AJ_T0036070.1 MGP_AJ_G0020135.1 mouse_genomes_project 12 114591902 114655186 + Vipr2 protein_coding retained_intron MGP_AJ_T0036071.1 MGP_AJ_G0020135.1 mouse_genomes_project 12 114591904 114661470 + MGP_AJ_P0036071 Vipr2 protein_coding protein_coding MGP_AJ_T0036072.1 MGP_AJ_G0020135.1 mouse_genomes_project 12 114591936 114613137 + Vipr2 protein_coding processed_transcript MGP_AJ_T0036073.1 MGP_AJ_G0020135.1 mouse_genomes_project 12 114591942 114609513 + Vipr2 protein_coding processed_transcript MGP_AJ_T0036074.1 MGP_AJ_G0020135.1 mouse_genomes_project 12 114591949 114648542 + Vipr2 protein_coding processed_transcript MGP_AJ_T0036075.1 MGP_AJ_G0020135.1 mouse_genomes_project 12 114652565 114658964 + MGP_AJ_P0036075 Vipr2 protein_coding protein_coding MGP_AJ_T0034351.1 MGP_AJ_G0019554.1 mouse_genomes_project 12 5581462 5658639 + MGP_AJ_P0034351 Pum2 protein_coding protein_coding MGP_AJ_T0034352.1 MGP_AJ_G0019554.1 mouse_genomes_project 12 5581462 5659766 + MGP_AJ_P0034352 Pum2 protein_coding protein_coding MGP_AJ_T0034353.1 MGP_AJ_G0019554.1 mouse_genomes_project 12 5581473 5657505 + MGP_AJ_P0034353 Pum2 protein_coding protein_coding MGP_AJ_T0034354.1 MGP_AJ_G0019554.1 mouse_genomes_project 12 5581552 5659746 + MGP_AJ_P0034354 Pum2 protein_coding protein_coding MGP_AJ_T0034355.1 MGP_AJ_G0019554.1 mouse_genomes_project 12 5581587 5614735 + Pum2 protein_coding processed_transcript MGP_AJ_T0034356.1 MGP_AJ_G0019554.1 mouse_genomes_project 12 5581603 5659742 + MGP_AJ_P0034356 Pum2 protein_coding nonsense_mediated_decay MGP_AJ_T0034357.1 MGP_AJ_G0019554.1 mouse_genomes_project 12 5581749 5657186 + MGP_AJ_P0034357 Pum2 protein_coding protein_coding MGP_AJ_T0034358.1 MGP_AJ_G0019554.1 mouse_genomes_project 12 5581798 5657213 + MGP_AJ_P0034358 Pum2 protein_coding protein_coding MGP_AJ_T0034359.1 MGP_AJ_G0019554.1 mouse_genomes_project 12 5582009 5659766 + MGP_AJ_P0034359 Pum2 protein_coding protein_coding MGP_AJ_T0034360.1 MGP_AJ_G0019554.1 mouse_genomes_project 12 5582064 5621001 + MGP_AJ_P0034360 Pum2 protein_coding protein_coding MGP_AJ_T0034361.1 MGP_AJ_G0019554.1 mouse_genomes_project 12 5582093 5620770 + MGP_AJ_P0034361 Pum2 protein_coding protein_coding MGP_AJ_T0034362.1 MGP_AJ_G0019554.1 mouse_genomes_project 12 5584862 5616857 + MGP_AJ_P0034362 Pum2 protein_coding protein_coding MGP_AJ_T0034363.1 MGP_AJ_G0019554.1 mouse_genomes_project 12 5605286 5621284 + MGP_AJ_P0034363 Pum2 protein_coding nonsense_mediated_decay MGP_AJ_T0034364.1 MGP_AJ_G0019554.1 mouse_genomes_project 12 5617592 5628983 + MGP_AJ_P0034364 Pum2 protein_coding protein_coding MGP_AJ_T0034365.1 MGP_AJ_G0019554.1 mouse_genomes_project 12 5636331 5655421 + MGP_AJ_P0034365 Pum2 protein_coding protein_coding MGP_AJ_T0034366.1 MGP_AJ_G0019554.1 mouse_genomes_project 12 5650659 5651579 + Pum2 protein_coding retained_intron MGP_AJ_T0034388.1 MGP_AJ_G0019564.1 mouse_genomes_project 12 8092874 8093441 - MGP_AJ_P0034388 Msgn1 protein_coding protein_coding MGP_AJ_T0000077.1 MGP_AJ_G0000063.1 mouse_genomes_project 12 112384258 112384688 - MGP_AJ_P0000077 Ighv14-4 IG_V_gene IG_V_gene MGP_AJ_T0000078.1 MGP_AJ_G0000063.1 mouse_genomes_project 12 112384264 112384683 - MGP_AJ_P0000078 Ighv14-4 IG_V_gene IG_V_gene MGP_AJ_T0017313.1 MGP_AJ_G0015214.1 mouse_genomes_project 12 101747589 101758778 - Gm28577 processed_transcript processed_transcript MGP_AJ_T0009852.1 MGP_AJ_G0007974.1 mouse_genomes_project 12 107636047 107636129 + Mir411 miRNA miRNA MGP_AJ_T0034807.1 MGP_AJ_G0019723.1 mouse_genomes_project 12 55346736 55351278 - MGP_AJ_P0034807 Clec14a protein_coding protein_coding MGP_AJ_T0034999.1 MGP_AJ_G0019786.1 mouse_genomes_project 12 69788475 69803995 - MGP_AJ_P0034999 Dhrs7 protein_coding protein_coding MGP_AJ_T0035000.1 MGP_AJ_G0019786.1 mouse_genomes_project 12 69788692 69803928 - MGP_AJ_P0035000 Dhrs7 protein_coding unknown_likely_coding MGP_AJ_T0006406.1 MGP_AJ_G0005338.1 mouse_genomes_project 12 30035650 30073541 - 4933406C10Rik lincRNA lincRNA MGP_AJ_T0006407.1 MGP_AJ_G0005338.1 mouse_genomes_project 12 30041216 30073535 - 4933406C10Rik lincRNA lincRNA MGP_AJ_T0006499.1 MGP_AJ_G0005397.1 mouse_genomes_project 12 108831858 108834632 + 4921507G05Rik lincRNA lincRNA MGP_AJ_T0035177.1 MGP_AJ_G0019855.1 mouse_genomes_project 12 78474257 78637472 + MGP_AJ_P0035177 Smoc1 protein_coding protein_coding MGP_AJ_T0035178.1 MGP_AJ_G0019855.1 mouse_genomes_project 12 78474277 78637468 + MGP_AJ_P0035178 Smoc1 protein_coding protein_coding MGP_AJ_T0035179.1 MGP_AJ_G0019855.1 mouse_genomes_project 12 78474277 78637468 + MGP_AJ_P0035179 Smoc1 protein_coding protein_coding MGP_AJ_T0035999.1 MGP_AJ_G0020111.1 mouse_genomes_project 12 110674764 110679097 + MGP_AJ_P0035999 Siva1 protein_coding protein_coding MGP_AJ_T0036000.1 MGP_AJ_G0020111.1 mouse_genomes_project 12 110674764 110679097 + MGP_AJ_P0036000 Siva1 protein_coding protein_coding MGP_AJ_T0035667.1 MGP_AJ_G0019988.1 mouse_genomes_project 12 100103336 100133175 + MGP_AJ_P0035667 Golga5 protein_coding protein_coding MGP_AJ_T0035668.1 MGP_AJ_G0019988.1 mouse_genomes_project 12 100104116 100133175 + MGP_AJ_P0035668 Golga5 protein_coding protein_coding MGP_AJ_T0009887.1 MGP_AJ_G0008009.1 mouse_genomes_project 12 107666387 107666455 + Mir377 miRNA miRNA MGP_AJ_T0034774.1 MGP_AJ_G0019709.1 mouse_genomes_project 12 52662573 52664231 + MGP_AJ_P0034774 Aldoart2 protein_coding protein_coding MGP_AJ_T0034681.1 MGP_AJ_G0019669.1 mouse_genomes_project 12 37368908 37371389 + MGP_AJ_P0034681 Gm7008 protein_coding protein_coding MGP_AJ_T0034682.1 MGP_AJ_G0019669.1 mouse_genomes_project 12 37369514 37375335 + MGP_AJ_P0034682 Gm7008 protein_coding nonsense_mediated_decay MGP_AJ_T0034683.1 MGP_AJ_G0019669.1 mouse_genomes_project 12 37369579 37375320 + MGP_AJ_P0034683 Gm7008 protein_coding nonsense_mediated_decay MGP_AJ_T0009865.1 MGP_AJ_G0007987.1 mouse_genomes_project 12 107643136 107643212 + Mir543 miRNA miRNA MGP_AJ_T0034561.1 MGP_AJ_G0019628.1 mouse_genomes_project 12 28602038 28616729 - MGP_AJ_P0034561 Cbll1 protein_coding protein_coding MGP_AJ_T0034562.1 MGP_AJ_G0019628.1 mouse_genomes_project 12 28602145 28616729 - MGP_AJ_P0034562 Cbll1 protein_coding protein_coding MGP_AJ_T0034563.1 MGP_AJ_G0019628.1 mouse_genomes_project 12 28604487 28616729 - MGP_AJ_P0034563 Cbll1 protein_coding protein_coding MGP_AJ_T0034564.1 MGP_AJ_G0019628.1 mouse_genomes_project 12 28605123 28616670 - MGP_AJ_P0034564 Cbll1 protein_coding protein_coding MGP_AJ_T0034565.1 MGP_AJ_G0019628.1 mouse_genomes_project 12 28605133 28616668 - MGP_AJ_P0034565 Cbll1 protein_coding protein_coding MGP_AJ_T0035565.1 MGP_AJ_G0019960.1 mouse_genomes_project 12 96079997 96211238 - MGP_AJ_P0035565 Kcnk10 protein_coding protein_coding MGP_AJ_T0035040.1 MGP_AJ_G0019801.1 mouse_genomes_project 12 71484602 71487612 + MGP_AJ_P0035040 Dbpht2 protein_coding protein_coding MGP_AJ_T0034741.1 MGP_AJ_G0019697.1 mouse_genomes_project 12 51213001 51237826 - MGP_AJ_P0034741 Egln3 protein_coding protein_coding MGP_AJ_T0035664.1 MGP_AJ_G0019987.1 mouse_genomes_project 12 100037828 100060771 - MGP_AJ_P0035664 Lgmn protein_coding protein_coding MGP_AJ_T0035665.1 MGP_AJ_G0019987.1 mouse_genomes_project 12 100037842 100073549 - MGP_AJ_P0035665 Lgmn protein_coding protein_coding MGP_AJ_T0035666.1 MGP_AJ_G0019987.1 mouse_genomes_project 12 100043828 100049750 - Lgmn protein_coding retained_intron MGP_AJ_T0100674.1 MGP_AJ_G0038640.1 mouse_genomes_project 12 75361552 75361673 + Gm24994 snoRNA snoRNA MGP_AJ_T0012804.1 MGP_AJ_G0010899.1 mouse_genomes_project 12 22862606 22862852 - processed_pseudogene processed_pseudogene MGP_AJ_T0003388.1 MGP_AJ_G0003110.1 mouse_genomes_project 12 37344843 37347293 + Gm17056 antisense antisense MGP_AJ_T0035002.1 MGP_AJ_G0019788.1 mouse_genomes_project 12 70036048 70075215 - MGP_AJ_P0035002 4930447C04Rik protein_coding protein_coding MGP_AJ_T0035003.1 MGP_AJ_G0019788.1 mouse_genomes_project 12 70036048 70075069 - MGP_AJ_P0035003 4930447C04Rik protein_coding protein_coding MGP_AJ_T0035004.1 MGP_AJ_G0019788.1 mouse_genomes_project 12 70047796 70063102 - MGP_AJ_P0035004 4930447C04Rik protein_coding nonsense_mediated_decay MGP_AJ_T0035005.1 MGP_AJ_G0019788.1 mouse_genomes_project 12 70047850 70063298 - 4930447C04Rik protein_coding retained_intron MGP_AJ_T0035006.1 MGP_AJ_G0019788.1 mouse_genomes_project 12 70047904 70063096 - 4930447C04Rik protein_coding processed_transcript MGP_AJ_T0035007.1 MGP_AJ_G0019788.1 mouse_genomes_project 12 70063058 70075166 - MGP_AJ_P0035007 4930447C04Rik protein_coding nonsense_mediated_decay MGP_AJ_T0035008.1 MGP_AJ_G0019788.1 mouse_genomes_project 12 70068701 70098798 - MGP_AJ_P0035008 4930447C04Rik protein_coding protein_coding MGP_AJ_T0035009.1 MGP_AJ_G0019788.1 mouse_genomes_project 12 70070229 70095829 - MGP_AJ_P0035009 4930447C04Rik protein_coding protein_coding MGP_AJ_T0035010.1 MGP_AJ_G0019788.1 mouse_genomes_project 12 70070233 70098107 - MGP_AJ_P0035010 4930447C04Rik protein_coding protein_coding MGP_AJ_T0034808.1 MGP_AJ_G0019724.1 mouse_genomes_project 12 56038038 56093253 - MGP_AJ_P0034808 Sec23a protein_coding unknown_likely_coding MGP_AJ_T0034809.1 MGP_AJ_G0019724.1 mouse_genomes_project 12 56038044 56093236 - MGP_AJ_P0034809 Sec23a protein_coding protein_coding MGP_AJ_T0034810.1 MGP_AJ_G0019724.1 mouse_genomes_project 12 56039365 56088454 - MGP_AJ_P0034810 Sec23a protein_coding protein_coding MGP_AJ_T0034811.1 MGP_AJ_G0019724.1 mouse_genomes_project 12 56046266 56052143 - Sec23a protein_coding retained_intron MGP_AJ_T0034812.1 MGP_AJ_G0019724.1 mouse_genomes_project 12 56053859 56064135 - Sec23a protein_coding retained_intron MGP_AJ_T0034813.1 MGP_AJ_G0019724.1 mouse_genomes_project 12 56087872 56093236 - Sec23a protein_coding retained_intron MGP_AJ_T0035859.1 MGP_AJ_G0020067.1 mouse_genomes_project 12 106974558 106996136 - MGP_AJ_P0035859 Begain protein_coding unknown_likely_coding MGP_AJ_T0035860.1 MGP_AJ_G0020067.1 mouse_genomes_project 12 106974568 107011167 - MGP_AJ_P0035860 Begain protein_coding protein_coding MGP_AJ_T0035861.1 MGP_AJ_G0020067.1 mouse_genomes_project 12 106977006 106979483 - Begain protein_coding retained_intron MGP_AJ_T0035862.1 MGP_AJ_G0020067.1 mouse_genomes_project 12 106980047 106995987 - Begain protein_coding processed_transcript MGP_AJ_T0000337.1 MGP_AJ_G0000281.1 mouse_genomes_project 12 56342448 56342517 + mt-Ti Mt_tRNA Mt_tRNA MGP_AJ_T0034614.1 MGP_AJ_G0019644.1 mouse_genomes_project 12 31105914 31108061 + MGP_AJ_P0034614 Twist1 protein_coding protein_coding MGP_AJ_T0036021.1 MGP_AJ_G0020119.1 mouse_genomes_project 12 110872752 110882783 - MGP_AJ_P0036021 Gpr132 protein_coding protein_coding MGP_AJ_T0009802.1 MGP_AJ_G0007924.1 mouse_genomes_project 12 69270792 69270901 - Gm24466 miRNA miRNA MGP_AJ_T0009842.1 MGP_AJ_G0007964.1 mouse_genomes_project 12 107517526 107517668 + Mir434 miRNA miRNA MGP_AJ_T0098394.1 MGP_AJ_G0036378.1 mouse_genomes_project 12 81564672 81565283 - pseudogene pseudogene MGP_AJ_T0006447.1 MGP_AJ_G0005371.1 mouse_genomes_project 12 97854094 97854921 - Gm26723 lincRNA lincRNA MGP_AJ_T0009819.1 MGP_AJ_G0007941.1 mouse_genomes_project 12 98654654 98654750 - Mir1190 miRNA miRNA MGP_AJ_T0035210.1 MGP_AJ_G0019864.1 mouse_genomes_project 12 79189498 79255779 - MGP_AJ_P0035210 Map3k9 protein_coding protein_coding MGP_AJ_T0035211.1 MGP_AJ_G0019864.1 mouse_genomes_project 12 79196590 79255483 - MGP_AJ_P0035211 Map3k9 protein_coding unknown_likely_coding MGP_AJ_T0009866.1 MGP_AJ_G0007988.1 mouse_genomes_project 12 107644632 107644695 + Mir495 miRNA miRNA MGP_AJ_T0100693.1 MGP_AJ_G0038659.1 mouse_genomes_project 12 107575003 107575076 + DQ267101 snoRNA snoRNA MGP_AJ_T0034801.1 MGP_AJ_G0019720.1 mouse_genomes_project 12 54642113 54648620 - MGP_AJ_P0034801 Foxa1 protein_coding protein_coding MGP_AJ_T0036054.1 MGP_AJ_G0020130.1 mouse_genomes_project 12 111174603 111182723 + MGP_AJ_P0036054 4930427A07Rik protein_coding protein_coding MGP_AJ_T0036055.1 MGP_AJ_G0020130.1 mouse_genomes_project 12 111174612 111175110 + 4930427A07Rik protein_coding retained_intron MGP_AJ_T0036056.1 MGP_AJ_G0020130.1 mouse_genomes_project 12 111174622 111184224 + MGP_AJ_P0036056 4930427A07Rik protein_coding nonsense_mediated_decay MGP_AJ_T0036057.1 MGP_AJ_G0020130.1 mouse_genomes_project 12 111174638 111175773 + 4930427A07Rik protein_coding retained_intron MGP_AJ_T0036058.1 MGP_AJ_G0020130.1 mouse_genomes_project 12 111174688 111179969 + MGP_AJ_P0036058 4930427A07Rik protein_coding nonsense_mediated_decay MGP_AJ_T0036059.1 MGP_AJ_G0020130.1 mouse_genomes_project 12 111175754 111182726 + 4930427A07Rik protein_coding retained_intron MGP_AJ_T0034648.1 MGP_AJ_G0019663.1 mouse_genomes_project 12 34999806 35753118 + MGP_AJ_P0034648 Dgkb protein_coding protein_coding MGP_AJ_T0034649.1 MGP_AJ_G0019663.1 mouse_genomes_project 12 35094404 35753955 + MGP_AJ_P0034649 Dgkb protein_coding unknown_likely_coding MGP_AJ_T0011329.1 MGP_AJ_G0009451.1 mouse_genomes_project 12 67056639 67056949 + Gm22058 misc_RNA misc_RNA MGP_AJ_T0035712.1 MGP_AJ_G0020005.1 mouse_genomes_project 12 101048629 101066434 - MGP_AJ_P0035712 Ddx24 protein_coding protein_coding MGP_AJ_T0035713.1 MGP_AJ_G0020005.1 mouse_genomes_project 12 101048629 101066521 - MGP_AJ_P0035713 Ddx24 protein_coding protein_coding MGP_AJ_T0034567.1 MGP_AJ_G0019630.1 mouse_genomes_project 12 28715628 28754649 - MGP_AJ_P0034567 Bcap29 protein_coding protein_coding MGP_AJ_T0034568.1 MGP_AJ_G0019630.1 mouse_genomes_project 12 28715628 28754588 - MGP_AJ_P0034568 Bcap29 protein_coding protein_coding MGP_AJ_T0102277.1 MGP_AJ_G0040019.1 mouse_genomes_project 12 102118877 102124409 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0034508.1 MGP_AJ_G0019609.1 mouse_genomes_project 12 25717498 25746570 - MGP_AJ_P0034508 Colec11 protein_coding protein_coding MGP_AJ_T0034814.1 MGP_AJ_G0019725.1 mouse_genomes_project 12 56094594 56109626 + MGP_AJ_P0034814 Gemin2 protein_coding protein_coding MGP_AJ_T0034815.1 MGP_AJ_G0019725.1 mouse_genomes_project 12 56094655 56109555 + Gemin2 protein_coding retained_intron MGP_AJ_T0034816.1 MGP_AJ_G0019725.1 mouse_genomes_project 12 56105825 56109043 + Gemin2 protein_coding retained_intron MGP_AJ_T0035910.1 MGP_AJ_G0020081.1 mouse_genomes_project 12 108981207 108984895 - MGP_AJ_P0035910 Ankrd9 protein_coding protein_coding MGP_AJ_T0035911.1 MGP_AJ_G0020081.1 mouse_genomes_project 12 108982280 108984110 - MGP_AJ_P0035911 Ankrd9 protein_coding protein_coding MGP_AJ_T0035912.1 MGP_AJ_G0020081.1 mouse_genomes_project 12 108982281 108984798 - MGP_AJ_P0035912 Ankrd9 protein_coding protein_coding MGP_AJ_T0035913.1 MGP_AJ_G0020081.1 mouse_genomes_project 12 108982281 108984876 - MGP_AJ_P0035913 Ankrd9 protein_coding protein_coding MGP_AJ_T0035914.1 MGP_AJ_G0020081.1 mouse_genomes_project 12 108982281 108984473 - MGP_AJ_P0035914 Ankrd9 protein_coding protein_coding MGP_AJ_T0035915.1 MGP_AJ_G0020081.1 mouse_genomes_project 12 108982283 108984850 - MGP_AJ_P0035915 Ankrd9 protein_coding protein_coding MGP_AJ_T0035916.1 MGP_AJ_G0020081.1 mouse_genomes_project 12 108983826 108984434 - Ankrd9 protein_coding processed_transcript MGP_AJ_T0009786.1 MGP_AJ_G0007908.1 mouse_genomes_project 12 27679180 27679387 - Gm25243 miRNA miRNA MGP_AJ_T0009830.1 MGP_AJ_G0007952.1 mouse_genomes_project 12 107486862 107486956 + Mir770 miRNA miRNA MGP_AJ_T0035596.1 MGP_AJ_G0019967.1 mouse_genomes_project 12 97364874 97530225 - MGP_AJ_P0035596 Efcab11 protein_coding protein_coding MGP_AJ_T0034922.1 MGP_AJ_G0019762.1 mouse_genomes_project 12 67089299 67095548 + MGP_AJ_P0034922 Gm3086 protein_coding protein_coding MGP_AJ_T0035283.1 MGP_AJ_G0019879.1 mouse_genomes_project 12 81445868 81454660 + MGP_AJ_P0035283 Acot2 protein_coding protein_coding MGP_AJ_T0000067.1 MGP_AJ_G0000053.1 mouse_genomes_project 12 111996446 111996959 - MGP_AJ_P0000067 Ighv7-1 IG_V_gene IG_V_gene MGP_AJ_T0000036.1 MGP_AJ_G0000028.1 mouse_genomes_project 12 111502224 111502253 - IG_D_pseudogene IG_D_pseudogene MGP_AJ_T0035086.1 MGP_AJ_G0019816.1 mouse_genomes_project 12 73610767 73613526 + MGP_AJ_P0035086 Hspa2 protein_coding protein_coding MGP_AJ_T0035763.1 MGP_AJ_G0020027.1 mouse_genomes_project 12 102076626 102082799 + MGP_AJ_P0035763 Serpina3j protein_coding protein_coding MGP_AJ_T0100696.1 MGP_AJ_G0038662.1 mouse_genomes_project 12 107580026 107580098 + DQ267102 snoRNA snoRNA MGP_AJ_T0009831.1 MGP_AJ_G0007953.1 mouse_genomes_project 12 107495165 107495256 + Mir673 miRNA miRNA MGP_AJ_T0034887.1 MGP_AJ_G0019749.1 mouse_genomes_project 12 66313123 66339483 - MGP_AJ_P0034887 Pole2 protein_coding protein_coding MGP_AJ_T0034844.1 MGP_AJ_G0019731.1 mouse_genomes_project 12 58644845 58730951 + Lrfn5 protein_coding processed_transcript MGP_AJ_T0034845.1 MGP_AJ_G0019731.1 mouse_genomes_project 12 58644862 58787689 + Lrfn5 protein_coding processed_transcript MGP_AJ_T0034846.1 MGP_AJ_G0019731.1 mouse_genomes_project 12 58645644 58965759 + MGP_AJ_P0034846 Lrfn5 protein_coding protein_coding MGP_AJ_T0034847.1 MGP_AJ_G0019731.1 mouse_genomes_project 12 58645644 58950664 + MGP_AJ_P0034847 Lrfn5 protein_coding protein_coding MGP_AJ_T0034848.1 MGP_AJ_G0019731.1 mouse_genomes_project 12 58964098 58966173 + Lrfn5 protein_coding retained_intron MGP_AJ_T0035437.1 MGP_AJ_G0019926.1 mouse_genomes_project 12 83758316 83809227 + MGP_AJ_P0035437 Gpatch2l protein_coding protein_coding MGP_AJ_T0003394.1 MGP_AJ_G0003114.1 mouse_genomes_project 12 53782040 53785095 - Gm15524 antisense antisense MGP_AJ_T0099400.1 MGP_AJ_G0037366.1 mouse_genomes_project 12 49618226 49618333 + Gm24859 snRNA snRNA MGP_AJ_T0003382.1 MGP_AJ_G0003104.1 mouse_genomes_project 12 625155 634694 - Dtnbos antisense antisense MGP_AJ_T0006397.1 MGP_AJ_G0005332.1 mouse_genomes_project 12 24252613 24272234 - Gm9866 lincRNA lincRNA MGP_AJ_T0006398.1 MGP_AJ_G0005332.1 mouse_genomes_project 12 24252619 24272556 - Gm9866 lincRNA lincRNA MGP_AJ_T0006399.1 MGP_AJ_G0005332.1 mouse_genomes_project 12 24253715 24272369 - Gm9866 lincRNA lincRNA MGP_AJ_T0006400.1 MGP_AJ_G0005332.1 mouse_genomes_project 12 24257234 24272385 - Gm9866 lincRNA lincRNA MGP_AJ_T0035714.1 MGP_AJ_G0020006.1 mouse_genomes_project 12 101075942 101081897 + MGP_AJ_P0035714 Ifi27 protein_coding protein_coding MGP_AJ_T0035715.1 MGP_AJ_G0020006.1 mouse_genomes_project 12 101075942 101081897 + MGP_AJ_P0035715 Ifi27 protein_coding protein_coding MGP_AJ_T0035716.1 MGP_AJ_G0020006.1 mouse_genomes_project 12 101075942 101081897 + MGP_AJ_P0035716 Ifi27 protein_coding protein_coding MGP_AJ_T0035717.1 MGP_AJ_G0020006.1 mouse_genomes_project 12 101075943 101081929 + MGP_AJ_P0035717 Ifi27 protein_coding protein_coding MGP_AJ_T0035718.1 MGP_AJ_G0020006.1 mouse_genomes_project 12 101075976 101079326 + Ifi27 protein_coding retained_intron MGP_AJ_T0035719.1 MGP_AJ_G0020006.1 mouse_genomes_project 12 101075990 101081929 + MGP_AJ_P0035719 Ifi27 protein_coding protein_coding MGP_AJ_T0035720.1 MGP_AJ_G0020006.1 mouse_genomes_project 12 101076016 101078663 + Ifi27 protein_coding retained_intron MGP_AJ_T0035721.1 MGP_AJ_G0020006.1 mouse_genomes_project 12 101076023 101079218 + MGP_AJ_P0035721 Ifi27 protein_coding protein_coding MGP_AJ_T0035722.1 MGP_AJ_G0020006.1 mouse_genomes_project 12 101079316 101081929 + Ifi27 protein_coding retained_intron MGP_AJ_T0036076.1 MGP_AJ_G0020136.1 mouse_genomes_project 12 114720296 114773759 - MGP_AJ_P0036076 Wdr60 protein_coding protein_coding MGP_AJ_T0011333.1 MGP_AJ_G0009455.1 mouse_genomes_project 12 84178244 84178329 + Gm27993 misc_RNA misc_RNA MGP_AJ_T0035281.1 MGP_AJ_G0019877.1 mouse_genomes_project 12 81411146 81411812 - MGP_AJ_P0035281 Gm26571 protein_coding protein_coding MGP_AJ_T0099396.1 MGP_AJ_G0037362.1 mouse_genomes_project 12 30122837 30122929 - Gm24922 snRNA snRNA MGP_AJ_T0011332.1 MGP_AJ_G0009454.1 mouse_genomes_project 12 73899031 73899313 + Gm24010 misc_RNA misc_RNA MGP_AJ_T0035394.1 MGP_AJ_G0019914.1 mouse_genomes_project 12 82774711 82782748 - MGP_AJ_P0035394 Acyp1 protein_coding protein_coding MGP_AJ_T0035395.1 MGP_AJ_G0019914.1 mouse_genomes_project 12 82774722 82782619 - MGP_AJ_P0035395 Acyp1 protein_coding protein_coding MGP_AJ_T0035396.1 MGP_AJ_G0019914.1 mouse_genomes_project 12 82774860 82791411 - MGP_AJ_P0035396 Acyp1 protein_coding protein_coding MGP_AJ_T0035397.1 MGP_AJ_G0019914.1 mouse_genomes_project 12 82781205 82782731 - MGP_AJ_P0035397 Acyp1 protein_coding protein_coding MGP_AJ_T0035919.1 MGP_AJ_G0020084.1 mouse_genomes_project 12 109178224 109251817 + MGP_AJ_P0035919 Traf3 protein_coding protein_coding MGP_AJ_T0035920.1 MGP_AJ_G0020084.1 mouse_genomes_project 12 109231762 109279790 + MGP_AJ_P0035920 Traf3 protein_coding protein_coding MGP_AJ_T0035921.1 MGP_AJ_G0020084.1 mouse_genomes_project 12 109231762 109279786 + MGP_AJ_P0035921 Traf3 protein_coding protein_coding MGP_AJ_T0035922.1 MGP_AJ_G0020084.1 mouse_genomes_project 12 109250301 109279795 + MGP_AJ_P0035922 Traf3 protein_coding protein_coding MGP_AJ_T0035923.1 MGP_AJ_G0020084.1 mouse_genomes_project 12 109261329 109275202 + Traf3 protein_coding retained_intron MGP_AJ_T0012856.1 MGP_AJ_G0010951.1 mouse_genomes_project 12 104398505 104400174 + processed_pseudogene processed_pseudogene MGP_AJ_T0100687.1 MGP_AJ_G0038653.1 mouse_genomes_project 12 107558775 107558848 + AF357425 snoRNA snoRNA MGP_AJ_T0035750.1 MGP_AJ_G0020019.1 mouse_genomes_project 12 101790930 101806595 - MGP_AJ_P0035750 Serpina12 protein_coding protein_coding MGP_AJ_T0009882.1 MGP_AJ_G0008004.1 mouse_genomes_project 12 107660613 107660679 + Mir668 miRNA miRNA MGP_AJ_T0009807.1 MGP_AJ_G0007929.1 mouse_genomes_project 12 77832834 77832899 - Mir1843a miRNA miRNA MGP_AJ_T0009827.1 MGP_AJ_G0007949.1 mouse_genomes_project 12 106773310 106773406 + Mir345 miRNA miRNA MGP_AJ_T0100705.1 MGP_AJ_G0038671.1 mouse_genomes_project 12 107609824 107609897 + Gm23787 snoRNA snoRNA MGP_AJ_T0006485.1 MGP_AJ_G0005394.1 mouse_genomes_project 12 107563101 107565112 + Gm26945 lincRNA lincRNA MGP_AJ_T0006446.1 MGP_AJ_G0005370.1 mouse_genomes_project 12 97271152 97273074 - 1700064M15Rik lincRNA lincRNA MGP_AJ_T0000090.1 MGP_AJ_G0000070.1 mouse_genomes_project 12 112507669 112508144 - MGP_AJ_P0000090 Ighv3-8 IG_V_gene IG_V_gene MGP_AJ_T0000248.1 MGP_AJ_G0000192.1 mouse_genomes_project 12 112659032 112659466 - IG_V_pseudogene IG_V_pseudogene MGP_AJ_T0003403.1 MGP_AJ_G0003121.1 mouse_genomes_project 12 77395495 77395800 + Gm28056 antisense antisense MGP_AJ_T0035604.1 MGP_AJ_G0019969.1 mouse_genomes_project 12 97611041 97708926 + MGP_AJ_P0035604 Kcnk13 protein_coding protein_coding MGP_AJ_T0035605.1 MGP_AJ_G0019969.1 mouse_genomes_project 12 97611041 97708926 + MGP_AJ_P0035605 Kcnk13 protein_coding protein_coding MGP_AJ_T0035606.1 MGP_AJ_G0019969.1 mouse_genomes_project 12 97611047 97612823 + MGP_AJ_P0035606 Kcnk13 protein_coding protein_coding MGP_AJ_T0035607.1 MGP_AJ_G0019969.1 mouse_genomes_project 12 97611067 97708918 + MGP_AJ_P0035607 Kcnk13 protein_coding protein_coding MGP_AJ_T0098562.1 MGP_AJ_G0036546.1 mouse_genomes_project 12 65742992 65743110 + n-R5s61 rRNA rRNA MGP_AJ_T0035636.1 MGP_AJ_G0019979.1 mouse_genomes_project 12 99041354 99255206 + MGP_AJ_P0035636 Catsperb protein_coding protein_coding MGP_AJ_T0009876.1 MGP_AJ_G0007998.1 mouse_genomes_project 12 107653980 107654095 - Gm44322 miRNA miRNA MGP_AJ_T0035637.1 MGP_AJ_G0019980.1 mouse_genomes_project 12 99274393 99347484 - MGP_AJ_P0035637 Tc2n protein_coding protein_coding MGP_AJ_T0035638.1 MGP_AJ_G0019980.1 mouse_genomes_project 12 99275515 99341589 - MGP_AJ_P0035638 Tc2n protein_coding nonsense_mediated_decay MGP_AJ_T0035639.1 MGP_AJ_G0019980.1 mouse_genomes_project 12 99277971 99339220 - MGP_AJ_P0035639 Tc2n protein_coding protein_coding MGP_AJ_T0035640.1 MGP_AJ_G0019980.1 mouse_genomes_project 12 99278018 99341257 - MGP_AJ_P0035640 Tc2n protein_coding protein_coding MGP_AJ_T0003406.1 MGP_AJ_G0003124.1 mouse_genomes_project 12 78961454 78971003 + antisense antisense MGP_AJ_T0012818.1 MGP_AJ_G0010913.1 mouse_genomes_project 12 54737837 54738275 - processed_pseudogene processed_pseudogene MGP_AJ_T0035176.1 MGP_AJ_G0019854.1 mouse_genomes_project 12 78398737 78413793 - MGP_AJ_P0035176 Slc10a1 protein_coding unknown_likely_coding MGP_AJ_T0034802.1 MGP_AJ_G0019721.1 mouse_genomes_project 12 54670772 54727397 + MGP_AJ_P0034802 protein_coding protein_coding MGP_AJ_T0034803.1 MGP_AJ_G0019721.1 mouse_genomes_project 12 54682410 54849847 + MGP_AJ_P0034803 protein_coding protein_coding MGP_AJ_T0034804.1 MGP_AJ_G0019721.1 mouse_genomes_project 12 54754944 54757249 + MGP_AJ_P0034804 protein_coding protein_coding MGP_AJ_T0034911.1 MGP_AJ_G0019760.1 mouse_genomes_project 12 66925769 67020054 - Map4k5 protein_coding processed_transcript MGP_AJ_T0034912.1 MGP_AJ_G0019760.1 mouse_genomes_project 12 66925769 67019960 - MGP_AJ_P0034912 Map4k5 protein_coding protein_coding MGP_AJ_T0034913.1 MGP_AJ_G0019760.1 mouse_genomes_project 12 66925769 67020151 - MGP_AJ_P0034913 Map4k5 protein_coding protein_coding MGP_AJ_T0034914.1 MGP_AJ_G0019760.1 mouse_genomes_project 12 66925778 67020114 - MGP_AJ_P0034914 Map4k5 protein_coding protein_coding MGP_AJ_T0034915.1 MGP_AJ_G0019760.1 mouse_genomes_project 12 66925778 67020054 - MGP_AJ_P0034915 Map4k5 protein_coding protein_coding MGP_AJ_T0034916.1 MGP_AJ_G0019760.1 mouse_genomes_project 12 66925780 66940313 - Map4k5 protein_coding retained_intron MGP_AJ_T0034917.1 MGP_AJ_G0019760.1 mouse_genomes_project 12 66939641 66940718 - Map4k5 protein_coding processed_transcript MGP_AJ_T0034918.1 MGP_AJ_G0019760.1 mouse_genomes_project 12 66966730 66997335 - Map4k5 protein_coding retained_intron MGP_AJ_T0034919.1 MGP_AJ_G0019760.1 mouse_genomes_project 12 66970409 67020074 - Map4k5 protein_coding retained_intron MGP_AJ_T0034920.1 MGP_AJ_G0019760.1 mouse_genomes_project 12 66970879 66978651 - Map4k5 protein_coding retained_intron MGP_AJ_T0009863.1 MGP_AJ_G0007985.1 mouse_genomes_project 12 107641544 107641665 + Mir1193 miRNA miRNA MGP_AJ_T0009869.1 MGP_AJ_G0007991.1 mouse_genomes_project 12 107649082 107649166 + Mir654 miRNA miRNA MGP_AJ_T0000068.1 MGP_AJ_G0000054.1 mouse_genomes_project 12 112097731 112098161 - MGP_AJ_P0000068 Ighv3-1 IG_V_gene IG_V_gene MGP_AJ_T0099421.1 MGP_AJ_G0037387.1 mouse_genomes_project 12 74605471 74605570 + Gm24775 snRNA snRNA MGP_AJ_T0017308.1 MGP_AJ_G0015210.1 mouse_genomes_project 12 96928199 96932212 - Gm20682 processed_transcript processed_transcript MGP_AJ_T0009864.1 MGP_AJ_G0007986.1 mouse_genomes_project 12 107642963 107643062 + Mir666 miRNA miRNA MGP_AJ_T0000060.1 MGP_AJ_G0000047.1 mouse_genomes_project 12 111697637 111697941 - MGP_AJ_P0000060 IG_V_gene IG_V_gene MGP_AJ_T0035581.1 MGP_AJ_G0019965.1 mouse_genomes_project 12 96565482 96624620 + MGP_AJ_P0035581 Ttc8 protein_coding protein_coding MGP_AJ_T0035582.1 MGP_AJ_G0019965.1 mouse_genomes_project 12 96565520 96624626 + MGP_AJ_P0035582 Ttc8 protein_coding protein_coding MGP_AJ_T0035583.1 MGP_AJ_G0019965.1 mouse_genomes_project 12 96565728 96603374 + MGP_AJ_P0035583 Ttc8 protein_coding protein_coding MGP_AJ_T0035584.1 MGP_AJ_G0019965.1 mouse_genomes_project 12 96582078 96612438 + Ttc8 protein_coding processed_transcript MGP_AJ_T0035585.1 MGP_AJ_G0019965.1 mouse_genomes_project 12 96616012 96623950 + Ttc8 protein_coding processed_transcript MGP_AJ_T0035586.1 MGP_AJ_G0019965.1 mouse_genomes_project 12 96616041 96621431 + Ttc8 protein_coding processed_transcript MGP_AJ_T0006503.1 MGP_AJ_G0005400.1 mouse_genomes_project 12 109435940 109440017 - Gm10425 lincRNA lincRNA MGP_AJ_T0009861.1 MGP_AJ_G0007983.1 mouse_genomes_project 12 107641191 107641276 + Mir494 miRNA miRNA MGP_AJ_T0035527.1 MGP_AJ_G0019952.1 mouse_genomes_project 12 88675919 89038211 - MGP_AJ_P0035527 Cep128 protein_coding protein_coding MGP_AJ_T0035528.1 MGP_AJ_G0019952.1 mouse_genomes_project 12 88675919 88920432 - MGP_AJ_P0035528 Cep128 protein_coding nonsense_mediated_decay MGP_AJ_T0035529.1 MGP_AJ_G0019952.1 mouse_genomes_project 12 88676767 88734329 - Cep128 protein_coding processed_transcript MGP_AJ_T0035530.1 MGP_AJ_G0019952.1 mouse_genomes_project 12 88676769 88709024 - Cep128 protein_coding processed_transcript MGP_AJ_T0035531.1 MGP_AJ_G0019952.1 mouse_genomes_project 12 88676769 88709024 - Cep128 protein_coding processed_transcript MGP_AJ_T0035532.1 MGP_AJ_G0019952.1 mouse_genomes_project 12 88676992 88844451 - Cep128 protein_coding processed_transcript MGP_AJ_T0035533.1 MGP_AJ_G0019952.1 mouse_genomes_project 12 88700215 88844504 - Cep128 protein_coding processed_transcript MGP_AJ_T0035534.1 MGP_AJ_G0019952.1 mouse_genomes_project 12 88873868 88913537 - MGP_AJ_P0035534 Cep128 protein_coding protein_coding MGP_AJ_T0035535.1 MGP_AJ_G0019952.1 mouse_genomes_project 12 88937444 89038211 - Cep128 protein_coding retained_intron MGP_AJ_T0035536.1 MGP_AJ_G0019952.1 mouse_genomes_project 12 88972347 88985502 - Cep128 protein_coding processed_transcript MGP_AJ_T0035537.1 MGP_AJ_G0019952.1 mouse_genomes_project 12 88990482 89038161 - Cep128 protein_coding retained_intron MGP_AJ_T0035538.1 MGP_AJ_G0019952.1 mouse_genomes_project 12 88992304 89038211 - Cep128 protein_coding processed_transcript MGP_AJ_T0035539.1 MGP_AJ_G0019952.1 mouse_genomes_project 12 89016138 89038155 - Cep128 protein_coding retained_intron MGP_AJ_T0011335.1 MGP_AJ_G0009457.1 mouse_genomes_project 12 88655955 88656278 + Gm26477 misc_RNA misc_RNA MGP_AJ_T0034470.1 MGP_AJ_G0019594.1 mouse_genomes_project 12 21543679 21544130 - MGP_AJ_P0034470 Gm16372 protein_coding protein_coding MGP_AJ_T0099436.1 MGP_AJ_G0037402.1 mouse_genomes_project 12 114985093 114985197 - Gm25112 snRNA snRNA MGP_AJ_T0035563.1 MGP_AJ_G0019958.1 mouse_genomes_project 12 95814969 95903633 - MGP_AJ_P0035563 Galc protein_coding protein_coding MGP_AJ_T0035399.1 MGP_AJ_G0019916.1 mouse_genomes_project 12 82802486 82842911 - MGP_AJ_P0035399 Nek9 protein_coding protein_coding MGP_AJ_T0102276.1 MGP_AJ_G0040018.1 mouse_genomes_project 12 101956750 101960160 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0035343.1 MGP_AJ_G0019897.1 mouse_genomes_project 12 82061020 82087985 + MGP_AJ_P0035343 Vsx2 protein_coding protein_coding MGP_AJ_T0035344.1 MGP_AJ_G0019897.1 mouse_genomes_project 12 82061098 82087985 + MGP_AJ_P0035344 Vsx2 protein_coding protein_coding MGP_AJ_T0035845.1 MGP_AJ_G0020062.1 mouse_genomes_project 12 106728309 106751975 + MGP_AJ_P0035845 Yy1 protein_coding protein_coding MGP_AJ_T0035846.1 MGP_AJ_G0020062.1 mouse_genomes_project 12 106741582 106750906 + Yy1 protein_coding retained_intron MGP_AJ_T0000234.1 MGP_AJ_G0000178.1 mouse_genomes_project 12 111757536 111757962 - IG_V_pseudogene IG_V_pseudogene MGP_AJ_T0034884.1 MGP_AJ_G0019746.1 mouse_genomes_project 12 66295671 66298285 + MGP_AJ_P0034884 Mgat2 protein_coding protein_coding MGP_AJ_T0098909.1 MGP_AJ_G0036890.1 mouse_genomes_project 12 41960217 41972195 - Gm15902 sense_intronic sense_intronic MGP_AJ_T0000034.1 MGP_AJ_G0000026.1 mouse_genomes_project 12 111487272 111487301 - IG_D_pseudogene IG_D_pseudogene MGP_AJ_T0099413.1 MGP_AJ_G0037379.1 mouse_genomes_project 12 60703504 60703611 + Gm24921 snRNA snRNA MGP_AJ_T0034305.1 MGP_AJ_G0019532.1 mouse_genomes_project 12 1081952 1102296 - MGP_AJ_P0034305 Cenpo protein_coding protein_coding MGP_AJ_T0034306.1 MGP_AJ_G0019532.1 mouse_genomes_project 12 1083770 1117703 - MGP_AJ_P0034306 Cenpo protein_coding protein_coding MGP_AJ_T0034308.1 MGP_AJ_G0019532.1 mouse_genomes_project 12 1099231 1102256 - Cenpo protein_coding retained_intron MGP_AJ_T0034309.1 MGP_AJ_G0019532.1 mouse_genomes_project 12 1099300 1117682 - MGP_AJ_P0034309 Cenpo protein_coding protein_coding MGP_AJ_T0034310.1 MGP_AJ_G0019532.1 mouse_genomes_project 12 1101107 1115741 - MGP_AJ_P0034310 Cenpo protein_coding protein_coding MGP_AJ_T0034311.1 MGP_AJ_G0019532.1 mouse_genomes_project 12 1101441 1117676 - Cenpo protein_coding retained_intron MGP_AJ_T0099434.1 MGP_AJ_G0037400.1 mouse_genomes_project 12 106800048 106801533 - Gm22079 snRNA snRNA MGP_AJ_T0009896.1 MGP_AJ_G0008018.1 mouse_genomes_project 12 108599392 108599495 + Gm27299 miRNA miRNA MGP_AJ_T0035244.1 MGP_AJ_G0019870.1 mouse_genomes_project 12 80971611 80993671 + MGP_AJ_P0035244 Dcaf4 protein_coding protein_coding MGP_AJ_T0035165.1 MGP_AJ_G0019851.1 mouse_genomes_project 12 78197847 78204343 - MGP_AJ_P0035165 Ccdc177 protein_coding protein_coding MGP_AJ_T0012868.1 MGP_AJ_G0010963.1 mouse_genomes_project 12 113987825 113988156 - processed_pseudogene processed_pseudogene MGP_AJ_T0035964.1 MGP_AJ_G0020098.1 mouse_genomes_project 12 109831565 109842065 - MGP_AJ_P0035964 Xrcc3 protein_coding protein_coding MGP_AJ_T0035965.1 MGP_AJ_G0020098.1 mouse_genomes_project 12 109831565 109840438 - MGP_AJ_P0035965 Xrcc3 protein_coding nonsense_mediated_decay MGP_AJ_T0035966.1 MGP_AJ_G0020098.1 mouse_genomes_project 12 109833220 109840438 - Xrcc3 protein_coding processed_transcript MGP_AJ_T0035967.1 MGP_AJ_G0020098.1 mouse_genomes_project 12 109833286 109838276 - Xrcc3 protein_coding retained_intron MGP_AJ_T0035968.1 MGP_AJ_G0020098.1 mouse_genomes_project 12 109833381 109842097 - Xrcc3 protein_coding processed_transcript MGP_AJ_T0035970.1 MGP_AJ_G0020098.1 mouse_genomes_project 12 109838059 109840458 - Xrcc3 protein_coding processed_transcript MGP_AJ_T0035971.1 MGP_AJ_G0020098.1 mouse_genomes_project 12 109838194 109842076 - Xrcc3 protein_coding processed_transcript MGP_AJ_T0035972.1 MGP_AJ_G0020098.1 mouse_genomes_project 12 109839765 109840458 - Xrcc3 protein_coding processed_transcript MGP_AJ_T0035094.1 MGP_AJ_G0019821.1 mouse_genomes_project 12 73960977 74124314 + MGP_AJ_P0035094 Fntb protein_coding nonsense_mediated_decay MGP_AJ_T0035095.1 MGP_AJ_G0019821.1 mouse_genomes_project 12 73960986 74123873 + MGP_AJ_P0035095 Fntb protein_coding protein_coding MGP_AJ_T0035105.1 MGP_AJ_G0019821.1 mouse_genomes_project 12 74035417 74125067 + MGP_AJ_P0035105 Fntb protein_coding protein_coding MGP_AJ_T0035106.1 MGP_AJ_G0019821.1 mouse_genomes_project 12 74035436 74044047 + Fntb protein_coding processed_transcript MGP_AJ_T0035107.1 MGP_AJ_G0019821.1 mouse_genomes_project 12 74038300 74090993 + Fntb protein_coding processed_transcript MGP_AJ_T0035108.1 MGP_AJ_G0019821.1 mouse_genomes_project 12 74090245 74114188 + Fntb protein_coding processed_transcript MGP_AJ_T0035109.1 MGP_AJ_G0019821.1 mouse_genomes_project 12 74113432 74114267 + Fntb protein_coding processed_transcript MGP_AJ_T0035110.1 MGP_AJ_G0019821.1 mouse_genomes_project 12 74113933 74118804 + Fntb protein_coding retained_intron MGP_AJ_T0100708.1 MGP_AJ_G0038674.1 mouse_genomes_project 12 107614203 107614271 + Gm25224 snoRNA snoRNA MGP_AJ_T0000095.1 MGP_AJ_G0000074.1 mouse_genomes_project 12 112592760 112593071 - MGP_AJ_P0000095 Ighv6-4 IG_V_gene IG_V_gene MGP_AJ_T0000096.1 MGP_AJ_G0000074.1 mouse_genomes_project 12 112592763 112593060 - MGP_AJ_P0000096 Ighv6-4 IG_V_gene IG_V_gene MGP_AJ_T0035266.1 MGP_AJ_G0019874.1 mouse_genomes_project 12 81220809 81249808 + MGP_AJ_P0035266 Papln protein_coding protein_coding MGP_AJ_T0035267.1 MGP_AJ_G0019874.1 mouse_genomes_project 12 81220829 81249781 + MGP_AJ_P0035267 Papln protein_coding protein_coding MGP_AJ_T0035268.1 MGP_AJ_G0019874.1 mouse_genomes_project 12 81220837 81238558 + Papln protein_coding retained_intron MGP_AJ_T0003391.1 MGP_AJ_G0003113.1 mouse_genomes_project 12 53635910 53701874 + Gm26973 antisense antisense MGP_AJ_T0003392.1 MGP_AJ_G0003113.1 mouse_genomes_project 12 53638023 53667994 + Gm26973 antisense antisense MGP_AJ_T0003393.1 MGP_AJ_G0003113.1 mouse_genomes_project 12 53638074 53701911 + Gm26973 antisense antisense MGP_AJ_T0012832.1 MGP_AJ_G0010927.1 mouse_genomes_project 12 75936083 75936186 - processed_pseudogene processed_pseudogene MGP_AJ_T0034706.1 MGP_AJ_G0019678.1 mouse_genomes_project 12 43708738 43837473 - MGP_AJ_P0034706 Nova1 protein_coding protein_coding MGP_AJ_T0100686.1 MGP_AJ_G0038652.1 mouse_genomes_project 12 107556529 107556604 + Gm23474 snoRNA snoRNA MGP_AJ_T0035699.1 MGP_AJ_G0020001.1 mouse_genomes_project 12 100952118 100958207 + MGP_AJ_P0035699 Fam181a protein_coding protein_coding MGP_AJ_T0035700.1 MGP_AJ_G0020001.1 mouse_genomes_project 12 100956094 100957460 + MGP_AJ_P0035700 Fam181a protein_coding protein_coding MGP_AJ_T0035701.1 MGP_AJ_G0020001.1 mouse_genomes_project 12 100956100 100958207 + MGP_AJ_P0035701 Fam181a protein_coding protein_coding MGP_AJ_T0034636.1 MGP_AJ_G0019657.1 mouse_genomes_project 12 33352359 33362890 - MGP_AJ_P0034636 Lrrc72 protein_coding protein_coding MGP_AJ_T0034637.1 MGP_AJ_G0019657.1 mouse_genomes_project 12 33353654 33398911 - MGP_AJ_P0034637 Lrrc72 protein_coding protein_coding MGP_AJ_T0034638.1 MGP_AJ_G0019657.1 mouse_genomes_project 12 33356379 33362906 - Lrrc72 protein_coding retained_intron MGP_AJ_T0000071.1 MGP_AJ_G0000057.1 mouse_genomes_project 12 112196693 112197171 - MGP_AJ_P0000071 IG_V_gene IG_V_gene MGP_AJ_T0009868.1 MGP_AJ_G0007990.1 mouse_genomes_project 12 107648582 107648668 + Mir376c miRNA miRNA MGP_AJ_T0034517.1 MGP_AJ_G0019614.1 mouse_genomes_project 12 25880806 25995145 + MGP_AJ_P0034517 Tssc1 protein_coding protein_coding MGP_AJ_T0034346.1 MGP_AJ_G0019550.1 mouse_genomes_project 12 5192135 5196156 - MGP_AJ_P0034346 Gdf7 protein_coding protein_coding MGP_AJ_T0009781.1 MGP_AJ_G0007903.1 mouse_genomes_project 12 12706873 12706981 - Mir6387 miRNA miRNA MGP_AJ_T0000033.1 MGP_AJ_G0000025.1 mouse_genomes_project 12 111585801 111585824 - MGP_AJ_P0000033 Gm16968 IG_D_gene IG_D_gene MGP_AJ_T0034698.1 MGP_AJ_G0019676.1 mouse_genomes_project 12 41364817 41641991 + MGP_AJ_P0034698 Nrcam protein_coding protein_coding MGP_AJ_T0034699.1 MGP_AJ_G0019676.1 mouse_genomes_project 12 41364817 41641991 + MGP_AJ_P0034699 Nrcam protein_coding protein_coding MGP_AJ_T0034700.1 MGP_AJ_G0019676.1 mouse_genomes_project 12 41570645 41639682 + MGP_AJ_P0034700 Nrcam protein_coding unknown_likely_coding MGP_AJ_T0034850.1 MGP_AJ_G0019733.1 mouse_genomes_project 12 61566075 61569677 - MGP_AJ_P0034850 Fscb protein_coding protein_coding MGP_AJ_T0035632.1 MGP_AJ_G0019977.1 mouse_genomes_project 12 98545779 98661965 - MGP_AJ_P0035632 Ccdc88c protein_coding protein_coding MGP_AJ_T0035633.1 MGP_AJ_G0019977.1 mouse_genomes_project 12 98545779 98661965 - MGP_AJ_P0035633 Ccdc88c protein_coding protein_coding MGP_AJ_T0098561.1 MGP_AJ_G0036545.1 mouse_genomes_project 12 64611766 64611885 - n-R5s60 rRNA rRNA MGP_AJ_T0034623.1 MGP_AJ_G0019650.1 mouse_genomes_project 12 32653613 32690786 - MGP_AJ_P0034623 Ahr protein_coding protein_coding MGP_AJ_T0034624.1 MGP_AJ_G0019650.1 mouse_genomes_project 12 32660501 32690369 - MGP_AJ_P0034624 Ahr protein_coding nonsense_mediated_decay MGP_AJ_T0034625.1 MGP_AJ_G0019650.1 mouse_genomes_project 12 32671481 32682458 - Ahr protein_coding retained_intron MGP_AJ_T0034493.1 MGP_AJ_G0019601.1 mouse_genomes_project 12 22044375 22132253 + MGP_AJ_P0034493 Kidins220 protein_coding protein_coding MGP_AJ_T0034494.1 MGP_AJ_G0019601.1 mouse_genomes_project 12 22044379 22135706 + MGP_AJ_P0034494 Kidins220 protein_coding unknown_likely_coding MGP_AJ_T0102278.1 MGP_AJ_G0040020.1 mouse_genomes_project 12 111412675 111413881 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0034694.1 MGP_AJ_G0019675.1 mouse_genomes_project 12 41314251 41321834 + MGP_AJ_P0034694 Pnpla8 protein_coding protein_coding MGP_AJ_T0034695.1 MGP_AJ_G0019675.1 mouse_genomes_project 12 41321516 41348201 + MGP_AJ_P0034695 Pnpla8 protein_coding protein_coding MGP_AJ_T0034696.1 MGP_AJ_G0019675.1 mouse_genomes_project 12 41321610 41347457 + MGP_AJ_P0034696 Pnpla8 protein_coding protein_coding MGP_AJ_T0034697.1 MGP_AJ_G0019675.1 mouse_genomes_project 12 41335166 41347702 + MGP_AJ_P0034697 Pnpla8 protein_coding protein_coding MGP_AJ_T0009784.1 MGP_AJ_G0007906.1 mouse_genomes_project 12 25803125 25803190 + Mir6937 miRNA miRNA MGP_AJ_T0034791.1 MGP_AJ_G0019719.1 mouse_genomes_project 12 54323388 54402404 + Mipol1 protein_coding retained_intron MGP_AJ_T0034792.1 MGP_AJ_G0019719.1 mouse_genomes_project 12 54323395 54451985 + Mipol1 protein_coding retained_intron MGP_AJ_T0034793.1 MGP_AJ_G0019719.1 mouse_genomes_project 12 54323397 54420790 + Mipol1 protein_coding retained_intron MGP_AJ_T0034794.1 MGP_AJ_G0019719.1 mouse_genomes_project 12 54323407 54599004 + MGP_AJ_P0034794 Mipol1 protein_coding protein_coding MGP_AJ_T0034795.1 MGP_AJ_G0019719.1 mouse_genomes_project 12 54323407 54557527 + MGP_AJ_P0034795 Mipol1 protein_coding protein_coding MGP_AJ_T0034796.1 MGP_AJ_G0019719.1 mouse_genomes_project 12 54323452 54464832 + Mipol1 protein_coding retained_intron MGP_AJ_T0034797.1 MGP_AJ_G0019719.1 mouse_genomes_project 12 54371876 54599004 + MGP_AJ_P0034797 Mipol1 protein_coding protein_coding MGP_AJ_T0034798.1 MGP_AJ_G0019719.1 mouse_genomes_project 12 54371876 54567350 + MGP_AJ_P0034798 Mipol1 protein_coding protein_coding MGP_AJ_T0034799.1 MGP_AJ_G0019719.1 mouse_genomes_project 12 54399824 54401416 + Mipol1 protein_coding retained_intron MGP_AJ_T0034800.1 MGP_AJ_G0019719.1 mouse_genomes_project 12 54427138 54464251 + Mipol1 protein_coding processed_transcript MGP_AJ_T0000026.1 MGP_AJ_G0000019.1 mouse_genomes_project 12 111483428 111483457 - MGP_AJ_P0000026 Gm37327 IG_D_gene IG_D_gene MGP_AJ_T0009901.1 MGP_AJ_G0008023.1 mouse_genomes_project 12 110763593 110763663 + Mir6940 miRNA miRNA MGP_AJ_T0034782.1 MGP_AJ_G0019715.1 mouse_genomes_project 12 53705809 53707709 - MGP_AJ_P0034782 Nkx2-9 protein_coding protein_coding MGP_AJ_T0035314.1 MGP_AJ_G0019890.1 mouse_genomes_project 12 81828993 81845516 - MGP_AJ_P0035314 Fam161b protein_coding protein_coding MGP_AJ_T0035315.1 MGP_AJ_G0019890.1 mouse_genomes_project 12 81829001 81845504 - MGP_AJ_P0035315 Fam161b protein_coding protein_coding MGP_AJ_T0035316.1 MGP_AJ_G0019890.1 mouse_genomes_project 12 81830176 81845475 - Fam161b protein_coding retained_intron MGP_AJ_T0035317.1 MGP_AJ_G0019890.1 mouse_genomes_project 12 81832043 81838540 - Fam161b protein_coding retained_intron MGP_AJ_T0034643.1 MGP_AJ_G0019662.1 mouse_genomes_project 12 34377112 34714453 + MGP_AJ_P0034643 Agmo protein_coding protein_coding MGP_AJ_T0034644.1 MGP_AJ_G0019662.1 mouse_genomes_project 12 34377211 34379956 + MGP_AJ_P0034644 Agmo protein_coding protein_coding MGP_AJ_T0034645.1 MGP_AJ_G0019662.1 mouse_genomes_project 12 34377240 34539693 + Agmo protein_coding retained_intron MGP_AJ_T0034646.1 MGP_AJ_G0019662.1 mouse_genomes_project 12 34377321 34557771 + MGP_AJ_P0034646 Agmo protein_coding nonsense_mediated_decay MGP_AJ_T0034647.1 MGP_AJ_G0019662.1 mouse_genomes_project 12 34377503 34697489 + MGP_AJ_P0034647 Agmo protein_coding protein_coding MGP_AJ_T0035352.1 MGP_AJ_G0019903.1 mouse_genomes_project 12 82281271 82375664 - MGP_AJ_P0035352 Ltbp2 protein_coding protein_coding MGP_AJ_T0035353.1 MGP_AJ_G0019903.1 mouse_genomes_project 12 82281272 82375627 - MGP_AJ_P0035353 Ltbp2 protein_coding protein_coding MGP_AJ_T0035354.1 MGP_AJ_G0019903.1 mouse_genomes_project 12 82281388 82375611 - MGP_AJ_P0035354 Ltbp2 protein_coding protein_coding MGP_AJ_T0035355.1 MGP_AJ_G0019903.1 mouse_genomes_project 12 82283265 82289933 - MGP_AJ_P0035355 Ltbp2 protein_coding protein_coding MGP_AJ_T0035356.1 MGP_AJ_G0019903.1 mouse_genomes_project 12 82284438 82291061 - MGP_AJ_P0035356 Ltbp2 protein_coding protein_coding MGP_AJ_T0035357.1 MGP_AJ_G0019903.1 mouse_genomes_project 12 82289948 82297553 - MGP_AJ_P0035357 Ltbp2 protein_coding protein_coding MGP_AJ_T0035358.1 MGP_AJ_G0019903.1 mouse_genomes_project 12 82305802 82375623 - Ltbp2 protein_coding retained_intron MGP_AJ_T0035282.1 MGP_AJ_G0019878.1 mouse_genomes_project 12 81414955 81442860 - MGP_AJ_P0035282 Heatr4 protein_coding protein_coding MGP_AJ_T0035675.1 MGP_AJ_G0019992.1 mouse_genomes_project 12 100381236 100398056 - MGP_AJ_P0035675 Gm20604 protein_coding protein_coding MGP_AJ_T0009871.1 MGP_AJ_G0007993.1 mouse_genomes_project 12 107649628 107649748 - Gm25252 miRNA miRNA MGP_AJ_T0034727.1 MGP_AJ_G0019689.1 mouse_genomes_project 12 48770280 48857825 - MGP_AJ_P0034727 Hectd1 protein_coding protein_coding MGP_AJ_T0034728.1 MGP_AJ_G0019689.1 mouse_genomes_project 12 48770280 48857825 - MGP_AJ_P0034728 Hectd1 protein_coding protein_coding MGP_AJ_T0006449.1 MGP_AJ_G0005373.1 mouse_genomes_project 12 98715392 98721834 + D130020L05Rik lincRNA lincRNA MGP_AJ_T0000062.1 MGP_AJ_G0000049.1 mouse_genomes_project 12 111908268 111908707 - MGP_AJ_P0000062 Ighv2-7 IG_V_gene IG_V_gene MGP_AJ_T0000004.1 MGP_AJ_G0000003.1 mouse_genomes_project 12 111279871 111285263 - MGP_AJ_P0000004 Igha IG_C_gene IG_C_gene MGP_AJ_T0000005.1 MGP_AJ_G0000003.1 mouse_genomes_project 12 111283737 111285263 - MGP_AJ_P0000005 Igha IG_C_gene IG_C_gene MGP_AJ_T0035133.1 MGP_AJ_G0019836.1 mouse_genomes_project 12 76507591 76516589 - MGP_AJ_P0035133 Pigh protein_coding protein_coding MGP_AJ_T0034762.1 MGP_AJ_G0019705.1 mouse_genomes_project 12 52368758 52379320 - MGP_AJ_P0034762 unknown_likely_coding unknown_likely_coding MGP_AJ_T0036026.1 MGP_AJ_G0020123.1 mouse_genomes_project 12 110993387 110995836 + MGP_AJ_P0036026 Btbd6 protein_coding protein_coding MGP_AJ_T0036027.1 MGP_AJ_G0020123.1 mouse_genomes_project 12 110993468 110995836 + MGP_AJ_P0036027 Btbd6 protein_coding protein_coding MGP_AJ_T0099432.1 MGP_AJ_G0037398.1 mouse_genomes_project 12 98413456 98413562 - Gm25801 snRNA snRNA MGP_AJ_T0009877.1 MGP_AJ_G0007999.1 mouse_genomes_project 12 107654001 107654075 + Mir539 miRNA miRNA MGP_AJ_T0100666.1 MGP_AJ_G0038632.1 mouse_genomes_project 12 61832588 61832719 + Gm24066 snoRNA snoRNA MGP_AJ_T0000864.1 MGP_AJ_G0000799.1 mouse_genomes_project 12 83581649 83582256 + TEC TEC MGP_AJ_T0006486.1 MGP_AJ_G0005395.1 mouse_genomes_project 12 107620314 107627314 + B830012L14Rik lincRNA lincRNA MGP_AJ_T0034475.1 MGP_AJ_G0019597.1 mouse_genomes_project 12 21722739 21734220 + MGP_AJ_P0034475 Klf11 protein_coding protein_coding MGP_AJ_T0034476.1 MGP_AJ_G0019597.1 mouse_genomes_project 12 21723264 21726491 + MGP_AJ_P0034476 Klf11 protein_coding protein_coding MGP_AJ_T0034477.1 MGP_AJ_G0019597.1 mouse_genomes_project 12 21723264 21725162 + MGP_AJ_P0034477 Klf11 protein_coding protein_coding MGP_AJ_T0034478.1 MGP_AJ_G0019597.1 mouse_genomes_project 12 21723521 21726486 + MGP_AJ_P0034478 Klf11 protein_coding protein_coding MGP_AJ_T0034347.1 MGP_AJ_G0019551.1 mouse_genomes_project 12 5210231 5240612 + MGP_AJ_P0034347 Hs1bp3 protein_coding protein_coding MGP_AJ_T0035341.1 MGP_AJ_G0019895.1 mouse_genomes_project 12 81914916 81935142 - MGP_AJ_P0035341 Aldh6a1 protein_coding protein_coding MGP_AJ_T0009779.1 MGP_AJ_G0007901.1 mouse_genomes_project 12 570606 570669 + Gm26050 miRNA miRNA MGP_AJ_T0036016.1 MGP_AJ_G0020116.1 mouse_genomes_project 12 110803355 110825170 - MGP_AJ_P0036016 protein_coding unknown_likely_coding MGP_AJ_T0036017.1 MGP_AJ_G0020116.1 mouse_genomes_project 12 110803602 110806423 - MGP_AJ_P0036017 protein_coding protein_coding MGP_AJ_T0036023.1 MGP_AJ_G0020121.1 mouse_genomes_project 12 110951843 110959188 - MGP_AJ_P0036023 Nudt14 protein_coding protein_coding MGP_AJ_T0100689.1 MGP_AJ_G0038655.1 mouse_genomes_project 12 107566509 107566580 + Gm23600 snoRNA snoRNA MGP_AJ_T0034790.1 MGP_AJ_G0019718.1 mouse_genomes_project 12 54323373 54332843 + MGP_AJ_P0034790 Prps1l3 protein_coding protein_coding MGP_AJ_T0035160.1 MGP_AJ_G0019849.1 mouse_genomes_project 12 78084356 78124844 + MGP_AJ_P0035160 Slc39a9 protein_coding protein_coding MGP_AJ_T0035796.1 MGP_AJ_G0020049.1 mouse_genomes_project 12 103577603 103654213 + MGP_AJ_P0035796 Ak7 protein_coding protein_coding MGP_AJ_T0009881.1 MGP_AJ_G0008003.1 mouse_genomes_project 12 107660020 107660091 + Mir134 miRNA miRNA MGP_AJ_T0100702.1 MGP_AJ_G0038668.1 mouse_genomes_project 12 107606148 107606223 + AF357341 snoRNA snoRNA MGP_AJ_T0034860.1 MGP_AJ_G0019740.1 mouse_genomes_project 12 62232125 62271730 - Mis18bp1 protein_coding retained_intron MGP_AJ_T0034861.1 MGP_AJ_G0019740.1 mouse_genomes_project 12 62232125 62271706 - MGP_AJ_P0034861 Mis18bp1 protein_coding protein_coding MGP_AJ_T0034862.1 MGP_AJ_G0019740.1 mouse_genomes_project 12 62235716 62238112 - Mis18bp1 protein_coding retained_intron MGP_AJ_T0034863.1 MGP_AJ_G0019740.1 mouse_genomes_project 12 62252134 62254451 - Mis18bp1 protein_coding processed_transcript MGP_AJ_T0034864.1 MGP_AJ_G0019740.1 mouse_genomes_project 12 62254074 62271692 - Mis18bp1 protein_coding processed_transcript MGP_AJ_T0034865.1 MGP_AJ_G0019740.1 mouse_genomes_project 12 62255379 62271704 - Mis18bp1 protein_coding retained_intron MGP_AJ_T0099414.1 MGP_AJ_G0037380.1 mouse_genomes_project 12 62637767 62637870 + Gm25599 snRNA snRNA MGP_AJ_T0035033.1 MGP_AJ_G0019798.1 mouse_genomes_project 12 71080121 71105312 + MGP_AJ_P0035033 Hif1a protein_coding protein_coding MGP_AJ_T0035034.1 MGP_AJ_G0019798.1 mouse_genomes_project 12 71080507 71119567 + MGP_AJ_P0035034 Hif1a protein_coding protein_coding MGP_AJ_T0035035.1 MGP_AJ_G0019798.1 mouse_genomes_project 12 71098807 71100739 + Hif1a protein_coding retained_intron MGP_AJ_T0035036.1 MGP_AJ_G0019798.1 mouse_genomes_project 12 71109899 71112103 + Hif1a protein_coding processed_transcript MGP_AJ_T0034948.1 MGP_AJ_G0019770.1 mouse_genomes_project 12 68072846 68099717 + MGP_AJ_P0034948 Actr10 protein_coding protein_coding MGP_AJ_T0035759.1 MGP_AJ_G0020025.1 mouse_genomes_project 12 101997933 102000044 + MGP_AJ_P0035759 Serpina3g protein_coding protein_coding MGP_AJ_T0035761.1 MGP_AJ_G0020025.1 mouse_genomes_project 12 101998676 102003258 + MGP_AJ_P0035761 Serpina3g protein_coding protein_coding MGP_AJ_T0100643.1 MGP_AJ_G0038609.1 mouse_genomes_project 12 14460142 14460278 + Gm22748 snoRNA snoRNA MGP_AJ_T0017312.1 MGP_AJ_G0015213.1 mouse_genomes_project 12 100312307 100366864 - Gm28373 processed_transcript processed_transcript MGP_AJ_T0000070.1 MGP_AJ_G0000056.1 mouse_genomes_project 12 112184926 112185499 - MGP_AJ_P0000070 IG_V_gene IG_V_gene MGP_AJ_T0006404.1 MGP_AJ_G0005336.1 mouse_genomes_project 12 28617180 28617858 - Gm29541 lincRNA lincRNA MGP_AJ_T0034929.1 MGP_AJ_G0019765.1 mouse_genomes_project 12 67281396 67310763 + Abhd12b protein_coding retained_intron MGP_AJ_T0034930.1 MGP_AJ_G0019765.1 mouse_genomes_project 12 67281411 67311303 + MGP_AJ_P0034930 Abhd12b protein_coding protein_coding MGP_AJ_T0034931.1 MGP_AJ_G0019765.1 mouse_genomes_project 12 67281411 67311303 + MGP_AJ_P0034931 Abhd12b protein_coding nonsense_mediated_decay MGP_AJ_T0034932.1 MGP_AJ_G0019765.1 mouse_genomes_project 12 67281411 67311303 + MGP_AJ_P0034932 Abhd12b protein_coding nonsense_mediated_decay MGP_AJ_T0034933.1 MGP_AJ_G0019765.1 mouse_genomes_project 12 67281411 67311303 + MGP_AJ_P0034933 Abhd12b protein_coding protein_coding MGP_AJ_T0034934.1 MGP_AJ_G0019765.1 mouse_genomes_project 12 67309463 67310763 + Abhd12b protein_coding retained_intron MGP_AJ_T0009859.1 MGP_AJ_G0007981.1 mouse_genomes_project 12 107638683 107638764 + Mir758 miRNA miRNA MGP_AJ_T0006413.1 MGP_AJ_G0005343.1 mouse_genomes_project 12 48917285 48918732 + Gm26517 lincRNA lincRNA MGP_AJ_T0036098.1 MGP_AJ_G0020146.1 mouse_genomes_project 12 117649191 117730547 - MGP_AJ_P0036098 Itgb8 protein_coding protein_coding MGP_AJ_T0036099.1 MGP_AJ_G0020146.1 mouse_genomes_project 12 117679523 117730546 - Itgb8 protein_coding retained_intron MGP_AJ_T0036100.1 MGP_AJ_G0020146.1 mouse_genomes_project 12 117692766 117730515 - Itgb8 protein_coding retained_intron MGP_AJ_T0034786.1 MGP_AJ_G0019717.1 mouse_genomes_project 12 53807276 54286859 - MGP_AJ_P0034786 Slc25a21 protein_coding protein_coding MGP_AJ_T0034787.1 MGP_AJ_G0019717.1 mouse_genomes_project 12 53808453 54250386 - MGP_AJ_P0034787 Slc25a21 protein_coding protein_coding MGP_AJ_T0034788.1 MGP_AJ_G0019717.1 mouse_genomes_project 12 53821592 53866214 - Slc25a21 protein_coding processed_transcript MGP_AJ_T0034789.1 MGP_AJ_G0019717.1 mouse_genomes_project 12 53864365 54073021 - Slc25a21 protein_coding retained_intron MGP_AJ_T0012820.1 MGP_AJ_G0010915.1 mouse_genomes_project 12 56402912 56404026 - processed_pseudogene processed_pseudogene MGP_AJ_T0100670.1 MGP_AJ_G0038636.1 mouse_genomes_project 12 62675516 62675648 + Gm22782 snoRNA snoRNA MGP_AJ_T0099406.1 MGP_AJ_G0037372.1 mouse_genomes_project 12 51790946 51791110 - Gm24305 snRNA snRNA MGP_AJ_T0035188.1 MGP_AJ_G0019859.1 mouse_genomes_project 12 78871174 78873678 - MGP_AJ_P0035188 Adam4 protein_coding protein_coding MGP_AJ_T0035280.1 MGP_AJ_G0019876.1 mouse_genomes_project 12 81411064 81413410 + MGP_AJ_P0035280 2410016O06Rik protein_coding protein_coding MGP_AJ_T0006464.1 MGP_AJ_G0005384.1 mouse_genomes_project 12 105039879 105042785 + Gm16085 lincRNA lincRNA MGP_AJ_T0000119.1 MGP_AJ_G0000091.1 mouse_genomes_project 12 113913501 113913802 - MGP_AJ_P0000119 IG_V_gene IG_V_gene MGP_AJ_T0000120.1 MGP_AJ_G0000091.1 mouse_genomes_project 12 113913501 113913949 - MGP_AJ_P0000120 IG_V_gene IG_V_gene MGP_AJ_T0034407.1 MGP_AJ_G0019578.1 mouse_genomes_project 12 13572026 13661004 - MGP_AJ_P0034407 Greb1 protein_coding protein_coding MGP_AJ_T0034408.1 MGP_AJ_G0019578.1 mouse_genomes_project 12 13572026 13704933 - MGP_AJ_P0034408 Greb1 protein_coding protein_coding MGP_AJ_T0034409.1 MGP_AJ_G0019578.1 mouse_genomes_project 12 13573494 13660958 - MGP_AJ_P0034409 Greb1 protein_coding protein_coding MGP_AJ_T0034410.1 MGP_AJ_G0019578.1 mouse_genomes_project 12 13575219 13576451 - Greb1 protein_coding retained_intron MGP_AJ_T0034411.1 MGP_AJ_G0019578.1 mouse_genomes_project 12 13584349 13592309 - Greb1 protein_coding retained_intron MGP_AJ_T0034412.1 MGP_AJ_G0019578.1 mouse_genomes_project 12 13592037 13644031 - Greb1 protein_coding retained_intron MGP_AJ_T0034413.1 MGP_AJ_G0019578.1 mouse_genomes_project 12 13604005 13610967 - Greb1 protein_coding retained_intron MGP_AJ_T0034414.1 MGP_AJ_G0019578.1 mouse_genomes_project 12 13609083 13611378 - Greb1 protein_coding retained_intron MGP_AJ_T0034415.1 MGP_AJ_G0019578.1 mouse_genomes_project 12 13609094 13611518 - MGP_AJ_P0034415 Greb1 protein_coding protein_coding MGP_AJ_T0034416.1 MGP_AJ_G0019578.1 mouse_genomes_project 12 13610829 13614702 - MGP_AJ_P0034416 Greb1 protein_coding nonsense_mediated_decay MGP_AJ_T0034417.1 MGP_AJ_G0019578.1 mouse_genomes_project 12 13626117 13643929 - Greb1 protein_coding retained_intron MGP_AJ_T0034418.1 MGP_AJ_G0019578.1 mouse_genomes_project 12 13637079 13705130 - MGP_AJ_P0034418 Greb1 protein_coding protein_coding MGP_AJ_T0035150.1 MGP_AJ_G0019843.1 mouse_genomes_project 12 77540716 77546047 - MGP_AJ_P0035150 Zfp36l1 protein_coding protein_coding MGP_AJ_T0035151.1 MGP_AJ_G0019843.1 mouse_genomes_project 12 77541760 77546032 - MGP_AJ_P0035151 Zfp36l1 protein_coding protein_coding MGP_AJ_T0035947.1 MGP_AJ_G0020095.1 mouse_genomes_project 12 109732217 109735966 - MGP_AJ_P0035947 Bag5 protein_coding protein_coding MGP_AJ_T0035948.1 MGP_AJ_G0020095.1 mouse_genomes_project 12 109732616 109735636 - MGP_AJ_P0035948 Bag5 protein_coding protein_coding MGP_AJ_T0035949.1 MGP_AJ_G0020095.1 mouse_genomes_project 12 109733921 109735662 - MGP_AJ_P0035949 Bag5 protein_coding protein_coding MGP_AJ_T0035950.1 MGP_AJ_G0020095.1 mouse_genomes_project 12 109733987 109735662 - MGP_AJ_P0035950 Bag5 protein_coding protein_coding MGP_AJ_T0012843.1 MGP_AJ_G0010938.1 mouse_genomes_project 12 89110430 89111220 + processed_pseudogene processed_pseudogene MGP_AJ_T0009854.1 MGP_AJ_G0007976.1 mouse_genomes_project 12 107636517 107636566 - Mir299b miRNA miRNA MGP_AJ_T0009823.1 MGP_AJ_G0007945.1 mouse_genomes_project 12 102802270 102802335 - Mir3069 miRNA miRNA MGP_AJ_T0098558.1 MGP_AJ_G0036542.1 mouse_genomes_project 12 50053659 50053778 - n-R5s58 rRNA rRNA MGP_AJ_T0034984.1 MGP_AJ_G0019782.1 mouse_genomes_project 12 69347684 69371640 - Rtn1 protein_coding processed_transcript MGP_AJ_T0034985.1 MGP_AJ_G0019782.1 mouse_genomes_project 12 69347684 69545943 - MGP_AJ_P0034985 Rtn1 protein_coding protein_coding MGP_AJ_T0034986.1 MGP_AJ_G0019782.1 mouse_genomes_project 12 69347685 69372625 - MGP_AJ_P0034986 Rtn1 protein_coding protein_coding MGP_AJ_T0034987.1 MGP_AJ_G0019782.1 mouse_genomes_project 12 69348221 69372625 - MGP_AJ_P0034987 Rtn1 protein_coding protein_coding MGP_AJ_T0034988.1 MGP_AJ_G0019782.1 mouse_genomes_project 12 69359161 69372587 - Rtn1 protein_coding processed_transcript MGP_AJ_T0035876.1 MGP_AJ_G0020071.1 mouse_genomes_project 12 108411255 108508216 + MGP_AJ_P0035876 Ppp2r5c protein_coding protein_coding MGP_AJ_T0035877.1 MGP_AJ_G0020071.1 mouse_genomes_project 12 108411255 108508216 + MGP_AJ_P0035877 Ppp2r5c protein_coding protein_coding MGP_AJ_T0036009.1 MGP_AJ_G0020113.1 mouse_genomes_project 12 110708733 110712691 + MGP_AJ_P0036009 Zbtb42 protein_coding protein_coding MGP_AJ_T0036010.1 MGP_AJ_G0020113.1 mouse_genomes_project 12 110708745 110712691 + MGP_AJ_P0036010 Zbtb42 protein_coding protein_coding MGP_AJ_T0036011.1 MGP_AJ_G0020113.1 mouse_genomes_project 12 110708783 110709879 + MGP_AJ_P0036011 Zbtb42 protein_coding protein_coding MGP_AJ_T0035122.1 MGP_AJ_G0019831.1 mouse_genomes_project 12 76270465 76288688 - MGP_AJ_P0035122 Atp6v1d protein_coding protein_coding MGP_AJ_T0012816.1 MGP_AJ_G0010911.1 mouse_genomes_project 12 54362820 54363286 - processed_pseudogene processed_pseudogene MGP_AJ_T0036012.1 MGP_AJ_G0020114.1 mouse_genomes_project 12 110752441 110776936 + MGP_AJ_P0036012 Cep170b protein_coding protein_coding MGP_AJ_T0036013.1 MGP_AJ_G0020114.1 mouse_genomes_project 12 110752461 110776930 + MGP_AJ_P0036013 Cep170b protein_coding protein_coding MGP_AJ_T0036014.1 MGP_AJ_G0020114.1 mouse_genomes_project 12 110752461 110776930 + MGP_AJ_P0036014 Cep170b protein_coding protein_coding MGP_AJ_T0034776.1 MGP_AJ_G0019711.1 mouse_genomes_project 12 52700287 52917271 - MGP_AJ_P0034776 Ralgapa1 protein_coding protein_coding MGP_AJ_T0034777.1 MGP_AJ_G0019711.1 mouse_genomes_project 12 52709454 52916871 - MGP_AJ_P0034777 Ralgapa1 protein_coding unknown_likely_coding MGP_AJ_T0100703.1 MGP_AJ_G0038669.1 mouse_genomes_project 12 107607013 107607100 + Gm22981 snoRNA snoRNA MGP_AJ_T0100647.1 MGP_AJ_G0038613.1 mouse_genomes_project 12 25464390 25464522 + Gm25564 snoRNA snoRNA MGP_AJ_T0034732.1 MGP_AJ_G0019692.1 mouse_genomes_project 12 49059419 49064600 - MGP_AJ_P0034732 Gpr33 protein_coding protein_coding MGP_AJ_T0035894.1 MGP_AJ_G0020075.1 mouse_genomes_project 12 108725973 108793744 + MGP_AJ_P0035894 protein_coding protein_coding MGP_AJ_T0035895.1 MGP_AJ_G0020075.1 mouse_genomes_project 12 108725977 108782067 + MGP_AJ_P0035895 protein_coding nonsense_mediated_decay MGP_AJ_T0035896.1 MGP_AJ_G0020075.1 mouse_genomes_project 12 108725986 108728238 + protein_coding retained_intron MGP_AJ_T0035897.1 MGP_AJ_G0020075.1 mouse_genomes_project 12 108726015 108730481 + protein_coding processed_transcript MGP_AJ_T0035898.1 MGP_AJ_G0020075.1 mouse_genomes_project 12 108726206 108782239 + MGP_AJ_P0035898 protein_coding protein_coding MGP_AJ_T0035469.1 MGP_AJ_G0019935.1 mouse_genomes_project 12 84644864 84649869 - MGP_AJ_P0035469 Ngb protein_coding protein_coding MGP_AJ_T0035470.1 MGP_AJ_G0019935.1 mouse_genomes_project 12 84644864 84649852 - MGP_AJ_P0035470 Ngb protein_coding protein_coding MGP_AJ_T0035471.1 MGP_AJ_G0019935.1 mouse_genomes_project 12 84645358 84649680 - MGP_AJ_P0035471 Ngb protein_coding protein_coding MGP_AJ_T0011334.1 MGP_AJ_G0009456.1 mouse_genomes_project 12 84337618 84337920 + Gm25888 misc_RNA misc_RNA MGP_AJ_T0012823.1 MGP_AJ_G0010918.1 mouse_genomes_project 12 60005507 60006483 - processed_pseudogene processed_pseudogene MGP_AJ_T0009845.1 MGP_AJ_G0007967.1 mouse_genomes_project 12 107518131 107518193 + Mir136 miRNA miRNA MGP_AJ_T0034621.1 MGP_AJ_G0019649.1 mouse_genomes_project 12 32196453 32298370 + MGP_AJ_P0034621 Snx13 protein_coding protein_coding MGP_AJ_T0034622.1 MGP_AJ_G0019649.1 mouse_genomes_project 12 32196464 32284887 + MGP_AJ_P0034622 Snx13 protein_coding protein_coding MGP_AJ_T0017303.1 MGP_AJ_G0015207.1 mouse_genomes_project 12 79010373 79011683 - Gm17191 processed_transcript processed_transcript MGP_AJ_T0035434.1 MGP_AJ_G0019924.1 mouse_genomes_project 12 83568987 83591518 - MGP_AJ_P0035434 Tgfb3 protein_coding protein_coding MGP_AJ_T0034598.1 MGP_AJ_G0019641.1 mouse_genomes_project 12 30274733 30379400 + MGP_AJ_P0034598 Atxn7l1 protein_coding protein_coding MGP_AJ_T0034599.1 MGP_AJ_G0019641.1 mouse_genomes_project 12 30274751 30379400 + MGP_AJ_P0034599 Atxn7l1 protein_coding protein_coding MGP_AJ_T0034600.1 MGP_AJ_G0019641.1 mouse_genomes_project 12 30274794 30500996 + MGP_AJ_P0034600 Atxn7l1 protein_coding protein_coding MGP_AJ_T0034601.1 MGP_AJ_G0019641.1 mouse_genomes_project 12 30274803 30503461 + MGP_AJ_P0034601 Atxn7l1 protein_coding protein_coding MGP_AJ_T0034602.1 MGP_AJ_G0019641.1 mouse_genomes_project 12 30274814 30453991 + MGP_AJ_P0034602 Atxn7l1 protein_coding nonsense_mediated_decay MGP_AJ_T0034603.1 MGP_AJ_G0019641.1 mouse_genomes_project 12 30274845 30456707 + Atxn7l1 protein_coding retained_intron MGP_AJ_T0034604.1 MGP_AJ_G0019641.1 mouse_genomes_project 12 30430732 30496079 + MGP_AJ_P0034604 Atxn7l1 protein_coding protein_coding MGP_AJ_T0034605.1 MGP_AJ_G0019641.1 mouse_genomes_project 12 30442154 30472781 + MGP_AJ_P0034605 Atxn7l1 protein_coding protein_coding MGP_AJ_T0034606.1 MGP_AJ_G0019641.1 mouse_genomes_project 12 30442166 30456707 + Atxn7l1 protein_coding retained_intron MGP_AJ_T0034607.1 MGP_AJ_G0019641.1 mouse_genomes_project 12 30442277 30453921 + MGP_AJ_P0034607 Atxn7l1 protein_coding protein_coding MGP_AJ_T0034608.1 MGP_AJ_G0019641.1 mouse_genomes_project 12 30443274 30500163 + MGP_AJ_P0034608 Atxn7l1 protein_coding protein_coding MGP_AJ_T0034609.1 MGP_AJ_G0019641.1 mouse_genomes_project 12 30443282 30454062 + Atxn7l1 protein_coding retained_intron MGP_AJ_T0034610.1 MGP_AJ_G0019641.1 mouse_genomes_project 12 30473145 30496084 + Atxn7l1 protein_coding retained_intron MGP_AJ_T0034611.1 MGP_AJ_G0019641.1 mouse_genomes_project 12 30495130 30500985 + MGP_AJ_P0034611 Atxn7l1 protein_coding protein_coding MGP_AJ_T0099386.1 MGP_AJ_G0037352.1 mouse_genomes_project 12 1636174 1636279 + Gm23676 snRNA snRNA MGP_AJ_T0006484.1 MGP_AJ_G0005393.1 mouse_genomes_project 12 107491803 107494899 - Gm26906 lincRNA lincRNA MGP_AJ_T0035042.1 MGP_AJ_G0019803.1 mouse_genomes_project 12 72093907 72367885 - MGP_AJ_P0035042 Kcnh5 protein_coding protein_coding MGP_AJ_T0099423.1 MGP_AJ_G0037389.1 mouse_genomes_project 12 76182508 76182610 - Gm25225 snRNA snRNA MGP_AJ_T0099389.1 MGP_AJ_G0037355.1 mouse_genomes_project 12 6774232 6774336 - Gm22845 snRNA snRNA MGP_AJ_T0035481.1 MGP_AJ_G0019941.1 mouse_genomes_project 12 84789142 84817112 - MGP_AJ_P0035481 Vipas39 protein_coding protein_coding MGP_AJ_T0035482.1 MGP_AJ_G0019941.1 mouse_genomes_project 12 84789142 84815070 - MGP_AJ_P0035482 Vipas39 protein_coding protein_coding MGP_AJ_T0035483.1 MGP_AJ_G0019941.1 mouse_genomes_project 12 84789142 84817112 - MGP_AJ_P0035483 Vipas39 protein_coding protein_coding MGP_AJ_T0035473.1 MGP_AJ_G0019937.1 mouse_genomes_project 12 84695531 84714994 + MGP_AJ_P0035473 Gstz1 protein_coding protein_coding MGP_AJ_T0035474.1 MGP_AJ_G0019937.1 mouse_genomes_project 12 84707406 84715003 + MGP_AJ_P0035474 Gstz1 protein_coding unknown_likely_coding MGP_AJ_T0102272.1 MGP_AJ_G0040014.1 mouse_genomes_project 12 101352637 101357705 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0006402.1 MGP_AJ_G0005334.1 mouse_genomes_project 12 27519566 27575570 - 2310016D03Rik lincRNA lincRNA MGP_AJ_T0000069.1 MGP_AJ_G0000055.1 mouse_genomes_project 12 112184926 112185391 - MGP_AJ_P0000069 IG_V_gene IG_V_gene MGP_AJ_T0035551.1 MGP_AJ_G0019956.1 mouse_genomes_project 12 89443722 89487280 - MGP_AJ_P0035551 Sel1l protein_coding protein_coding MGP_AJ_T0035552.1 MGP_AJ_G0019956.1 mouse_genomes_project 12 89443722 89487280 - MGP_AJ_P0035552 Sel1l protein_coding protein_coding MGP_AJ_T0035553.1 MGP_AJ_G0019956.1 mouse_genomes_project 12 89443744 89451842 - Sel1l protein_coding processed_transcript MGP_AJ_T0035554.1 MGP_AJ_G0019956.1 mouse_genomes_project 12 89444298 89487252 - MGP_AJ_P0035554 Sel1l protein_coding protein_coding MGP_AJ_T0035555.1 MGP_AJ_G0019956.1 mouse_genomes_project 12 89446320 89487253 - Sel1l protein_coding retained_intron MGP_AJ_T0035556.1 MGP_AJ_G0019956.1 mouse_genomes_project 12 89453400 89456146 - Sel1l protein_coding retained_intron MGP_AJ_T0035557.1 MGP_AJ_G0019956.1 mouse_genomes_project 12 89457876 89487253 - Sel1l protein_coding retained_intron MGP_AJ_T0035558.1 MGP_AJ_G0019956.1 mouse_genomes_project 12 89462801 89469840 - Sel1l protein_coding retained_intron MGP_AJ_T0035559.1 MGP_AJ_G0019956.1 mouse_genomes_project 12 89470080 89487262 - Sel1l protein_coding retained_intron MGP_AJ_T0035560.1 MGP_AJ_G0019956.1 mouse_genomes_project 12 89479455 89487263 - Sel1l protein_coding retained_intron MGP_AJ_T0006451.1 MGP_AJ_G0005375.1 mouse_genomes_project 12 102696108 102696750 - Gm28875 lincRNA lincRNA MGP_AJ_T0006472.1 MGP_AJ_G0005391.1 mouse_genomes_project 12 107461903 107467757 + Meg3 lincRNA lincRNA MGP_AJ_T0006473.1 MGP_AJ_G0005391.1 mouse_genomes_project 12 107461907 107494897 + Meg3 lincRNA lincRNA MGP_AJ_T0006474.1 MGP_AJ_G0005391.1 mouse_genomes_project 12 107461909 107482361 + Meg3 lincRNA lincRNA MGP_AJ_T0006475.1 MGP_AJ_G0005391.1 mouse_genomes_project 12 107462924 107484854 + Meg3 lincRNA lincRNA MGP_AJ_T0006476.1 MGP_AJ_G0005391.1 mouse_genomes_project 12 107463169 107466745 + Meg3 lincRNA lincRNA MGP_AJ_T0006478.1 MGP_AJ_G0005391.1 mouse_genomes_project 12 107466935 107481492 + Meg3 lincRNA lincRNA MGP_AJ_T0006479.1 MGP_AJ_G0005391.1 mouse_genomes_project 12 107467974 107494902 + Meg3 lincRNA lincRNA MGP_AJ_T0006480.1 MGP_AJ_G0005391.1 mouse_genomes_project 12 107468967 107494895 + Meg3 lincRNA lincRNA MGP_AJ_T0006481.1 MGP_AJ_G0005391.1 mouse_genomes_project 12 107469021 107494898 + Meg3 lincRNA lincRNA MGP_AJ_T0006482.1 MGP_AJ_G0005391.1 mouse_genomes_project 12 107472292 107481975 + Meg3 lincRNA lincRNA MGP_AJ_T0006483.1 MGP_AJ_G0005391.1 mouse_genomes_project 12 107472389 107472910 + Meg3 lincRNA lincRNA MGP_AJ_T0012817.1 MGP_AJ_G0010912.1 mouse_genomes_project 12 54620845 54622429 - processed_pseudogene processed_pseudogene MGP_AJ_T0012872.1 MGP_AJ_G0010967.1 mouse_genomes_project 12 118496684 118497126 + processed_pseudogene processed_pseudogene MGP_AJ_T0034585.1 MGP_AJ_G0019636.1 mouse_genomes_project 12 29302315 29339397 - MGP_AJ_P0034585 Pik3cg protein_coding nonsense_mediated_decay MGP_AJ_T0034586.1 MGP_AJ_G0019636.1 mouse_genomes_project 12 29303014 29339445 - MGP_AJ_P0034586 Pik3cg protein_coding protein_coding MGP_AJ_T0034587.1 MGP_AJ_G0019636.1 mouse_genomes_project 12 29304469 29339260 - MGP_AJ_P0034587 Pik3cg protein_coding protein_coding MGP_AJ_T0034588.1 MGP_AJ_G0019636.1 mouse_genomes_project 12 29331346 29331805 - Pik3cg protein_coding retained_intron MGP_AJ_T0099425.1 MGP_AJ_G0037391.1 mouse_genomes_project 12 78062235 78062339 - Gm23817 snRNA snRNA MGP_AJ_T0099409.1 MGP_AJ_G0037375.1 mouse_genomes_project 12 53007471 53007574 - Gm22296 snRNA snRNA MGP_AJ_T0099435.1 MGP_AJ_G0037401.1 mouse_genomes_project 12 111231464 111231568 + Gm25622 snRNA snRNA MGP_AJ_T0034859.1 MGP_AJ_G0019739.1 mouse_genomes_project 12 62173827 62231446 + MGP_AJ_P0034859 Fancm protein_coding protein_coding MGP_AJ_T0000116.1 MGP_AJ_G0000089.1 mouse_genomes_project 12 113368204 113368506 - MGP_AJ_P0000116 Ighv1-49 IG_V_gene IG_V_gene MGP_AJ_T0000117.1 MGP_AJ_G0000089.1 mouse_genomes_project 12 113368204 113368498 - MGP_AJ_P0000117 Ighv1-49 IG_V_gene IG_V_gene MGP_AJ_T0006470.1 MGP_AJ_G0005389.1 mouse_genomes_project 12 106242788 106258313 - 4930478K11Rik lincRNA lincRNA MGP_AJ_T0012824.1 MGP_AJ_G0010919.1 mouse_genomes_project 12 60190254 60190551 - processed_pseudogene processed_pseudogene MGP_AJ_T0012869.1 MGP_AJ_G0010964.1 mouse_genomes_project 12 113987828 113988157 - processed_pseudogene processed_pseudogene MGP_AJ_T0006391.1 MGP_AJ_G0005326.1 mouse_genomes_project 12 6475232 6480575 - 1700022H16Rik lincRNA lincRNA MGP_AJ_T0000861.1 MGP_AJ_G0000796.1 mouse_genomes_project 12 80559768 80560570 - TEC TEC MGP_AJ_T0012859.1 MGP_AJ_G0010954.1 mouse_genomes_project 12 105116811 105117802 - processed_pseudogene processed_pseudogene MGP_AJ_T0035285.1 MGP_AJ_G0019881.1 mouse_genomes_project 12 81503854 81510197 + MGP_AJ_P0035285 Acot4 protein_coding protein_coding MGP_AJ_T0035286.1 MGP_AJ_G0019881.1 mouse_genomes_project 12 81504182 81507696 + Acot4 protein_coding retained_intron MGP_AJ_T0036077.1 MGP_AJ_G0020137.1 mouse_genomes_project 12 114792320 114885150 + MGP_AJ_P0036077 Esyt2 protein_coding protein_coding MGP_AJ_T0003404.1 MGP_AJ_G0003122.1 mouse_genomes_project 12 78127872 78134663 - Plekhd1os antisense antisense MGP_AJ_T0034503.1 MGP_AJ_G0019607.1 mouse_genomes_project 12 25632410 25638916 - protein_coding processed_transcript MGP_AJ_T0034504.1 MGP_AJ_G0019607.1 mouse_genomes_project 12 25638257 25646820 - protein_coding processed_transcript MGP_AJ_T0034505.1 MGP_AJ_G0019607.1 mouse_genomes_project 12 25638485 25675151 - MGP_AJ_P0034505 protein_coding protein_coding MGP_AJ_T0035752.1 MGP_AJ_G0020021.1 mouse_genomes_project 12 101878981 101888154 + MGP_AJ_P0035752 Serpina3a protein_coding protein_coding MGP_AJ_T0035753.1 MGP_AJ_G0020021.1 mouse_genomes_project 12 101879037 101888066 + MGP_AJ_P0035753 Serpina3a protein_coding protein_coding MGP_AJ_T0035754.1 MGP_AJ_G0020021.1 mouse_genomes_project 12 101882227 101887776 + MGP_AJ_P0035754 Serpina3a protein_coding protein_coding MGP_AJ_T0000074.1 MGP_AJ_G0000060.1 mouse_genomes_project 12 112319512 112319761 - MGP_AJ_P0000074 IG_V_gene IG_V_gene MGP_AJ_T0034317.1 MGP_AJ_G0019537.1 mouse_genomes_project 12 1576431 1576956 - MGP_AJ_P0034317 Gm17541 protein_coding protein_coding MGP_AJ_T0035075.1 MGP_AJ_G0019812.1 mouse_genomes_project 12 73457819 73523283 + MGP_AJ_P0035075 Mthfd1 protein_coding protein_coding MGP_AJ_T0100645.1 MGP_AJ_G0038611.1 mouse_genomes_project 12 21847678 21847807 + Gm26211 snoRNA snoRNA MGP_AJ_T0035780.1 MGP_AJ_G0020041.1 mouse_genomes_project 12 103042965 103047093 + MGP_AJ_P0035780 Tcl1b3 protein_coding protein_coding MGP_AJ_T0036060.1 MGP_AJ_G0020131.1 mouse_genomes_project 12 111206180 111209767 + MGP_AJ_P0036060 Tmem121 protein_coding protein_coding MGP_AJ_T0000863.1 MGP_AJ_G0000798.1 mouse_genomes_project 12 82604128 82605698 - TEC TEC MGP_AJ_T0012813.1 MGP_AJ_G0010908.1 mouse_genomes_project 12 52029606 52030744 + processed_pseudogene processed_pseudogene MGP_AJ_T0000115.1 MGP_AJ_G0000088.1 mouse_genomes_project 12 112834115 112834549 - MGP_AJ_P0000115 Ighv1-15 IG_V_gene IG_V_gene MGP_AJ_T0009846.1 MGP_AJ_G0007968.1 mouse_genomes_project 12 107534356 107534452 + Mir341 miRNA miRNA MGP_AJ_T0035926.1 MGP_AJ_G0020087.1 mouse_genomes_project 12 109415879 109421142 + MGP_AJ_P0035926 A230065H16Rik protein_coding protein_coding MGP_AJ_T0000869.1 MGP_AJ_G0000804.1 mouse_genomes_project 12 110374986 110377739 - TEC TEC MGP_AJ_T0100656.1 MGP_AJ_G0038622.1 mouse_genomes_project 12 40821242 40821371 + Gm26326 snoRNA snoRNA MGP_AJ_T0035724.1 MGP_AJ_G0020008.1 mouse_genomes_project 12 101185096 101267867 + MGP_AJ_P0035724 Ppp4r4 protein_coding protein_coding MGP_AJ_T0035725.1 MGP_AJ_G0020008.1 mouse_genomes_project 12 101185365 101266940 + MGP_AJ_P0035725 Ppp4r4 protein_coding nonsense_mediated_decay MGP_AJ_T0035726.1 MGP_AJ_G0020008.1 mouse_genomes_project 12 101185448 101266868 + MGP_AJ_P0035726 Ppp4r4 protein_coding unknown_likely_coding MGP_AJ_T0035727.1 MGP_AJ_G0020008.1 mouse_genomes_project 12 101210964 101267102 + MGP_AJ_P0035727 Ppp4r4 protein_coding protein_coding MGP_AJ_T0035728.1 MGP_AJ_G0020008.1 mouse_genomes_project 12 101233930 101244132 + MGP_AJ_P0035728 Ppp4r4 protein_coding protein_coding MGP_AJ_T0035729.1 MGP_AJ_G0020008.1 mouse_genomes_project 12 101251298 101256045 + MGP_AJ_P0035729 Ppp4r4 protein_coding protein_coding MGP_AJ_T0099404.1 MGP_AJ_G0037370.1 mouse_genomes_project 12 51750758 51750933 + Gm22513 snRNA snRNA MGP_AJ_T0000007.1 MGP_AJ_G0000005.1 mouse_genomes_project 12 111311791 111317990 - MGP_AJ_P0000007 Ighg2c IG_C_gene IG_C_gene MGP_AJ_T0000008.1 MGP_AJ_G0000005.1 mouse_genomes_project 12 111316365 111317992 - MGP_AJ_P0000008 Ighg2c IG_C_gene IG_C_gene MGP_AJ_T0009855.1 MGP_AJ_G0007977.1 mouse_genomes_project 12 107637652 107637764 - Gm25750 miRNA miRNA MGP_AJ_T0034314.1 MGP_AJ_G0019535.1 mouse_genomes_project 12 1481344 1481446 - MGP_AJ_P0034314 Gm3625 protein_coding protein_coding MGP_AJ_T0000127.1 MGP_AJ_G0000096.1 mouse_genomes_project 12 114463748 114464032 - MGP_AJ_P0000127 Ighv1-81 IG_V_gene IG_V_gene MGP_AJ_T0035161.1 MGP_AJ_G0019850.1 mouse_genomes_project 12 78134787 78166508 + MGP_AJ_P0035161 Plekhd1 protein_coding protein_coding MGP_AJ_T0035162.1 MGP_AJ_G0019850.1 mouse_genomes_project 12 78149013 78162979 + Plekhd1 protein_coding processed_transcript MGP_AJ_T0035163.1 MGP_AJ_G0019850.1 mouse_genomes_project 12 78163051 78164301 + MGP_AJ_P0035163 Plekhd1 protein_coding nonsense_mediated_decay MGP_AJ_T0035164.1 MGP_AJ_G0019850.1 mouse_genomes_project 12 78164025 78165204 + Plekhd1 protein_coding retained_intron MGP_AJ_T0009782.1 MGP_AJ_G0007904.1 mouse_genomes_project 12 14263376 14263459 + Mir3066 miRNA miRNA MGP_AJ_T0035050.1 MGP_AJ_G0019807.1 mouse_genomes_project 12 72828065 72868757 - MGP_AJ_P0035050 Wdr89 protein_coding protein_coding MGP_AJ_T0035051.1 MGP_AJ_G0019807.1 mouse_genomes_project 12 72828686 72868747 - MGP_AJ_P0035051 Wdr89 protein_coding protein_coding MGP_AJ_T0000862.1 MGP_AJ_G0000797.1 mouse_genomes_project 12 80560667 80561609 + TEC TEC MGP_AJ_T0000040.1 MGP_AJ_G0000032.1 mouse_genomes_project 12 111466359 111466407 - MGP_AJ_P0000040 Ighj2 IG_J_gene IG_J_gene MGP_AJ_T0000041.1 MGP_AJ_G0000032.1 mouse_genomes_project 12 111466405 111466459 - Ighj2 IG_J_gene processed_transcript MGP_AJ_T0000111.1 MGP_AJ_G0000086.1 mouse_genomes_project 12 112796571 112797004 - MGP_AJ_P0000111 Ighv1-11 IG_V_gene IG_V_gene MGP_AJ_T0009857.1 MGP_AJ_G0007979.1 mouse_genomes_project 12 107638190 107638310 + Mir1197 miRNA miRNA MGP_AJ_T0100692.1 MGP_AJ_G0038658.1 mouse_genomes_project 12 107573194 107573266 + DQ267100 snoRNA snoRNA MGP_AJ_T0098569.1 MGP_AJ_G0036553.1 mouse_genomes_project 12 103512050 103512179 + Gm22790 rRNA rRNA MGP_AJ_T0034721.1 MGP_AJ_G0019685.1 mouse_genomes_project 12 48401254 48474175 + MGP_AJ_P0034721 Scfd1 protein_coding protein_coding MGP_AJ_T0035734.1 MGP_AJ_G0020011.1 mouse_genomes_project 12 101317551 101324883 - MGP_AJ_P0035734 Serpina16 protein_coding protein_coding MGP_AJ_T0035735.1 MGP_AJ_G0020011.1 mouse_genomes_project 12 101317640 101324208 - MGP_AJ_P0035735 Serpina16 protein_coding protein_coding MGP_AJ_T0034983.1 MGP_AJ_G0019781.1 mouse_genomes_project 12 69240560 69324044 - MGP_AJ_P0034983 Ccdc175 protein_coding protein_coding MGP_AJ_T0000252.1 MGP_AJ_G0000196.1 mouse_genomes_project 12 112736211 112736509 - IG_V_pseudogene IG_V_pseudogene MGP_AJ_T0009860.1 MGP_AJ_G0007982.1 mouse_genomes_project 12 107639354 107639451 + Mir329 miRNA miRNA MGP_AJ_T0006436.1 MGP_AJ_G0005360.1 mouse_genomes_project 12 83477281 83493698 - Gm26531 lincRNA lincRNA MGP_AJ_T0009817.1 MGP_AJ_G0007939.1 mouse_genomes_project 12 89428481 89428550 - Gm22015 miRNA miRNA MGP_AJ_T0034293.1 MGP_AJ_G0019527.1 mouse_genomes_project 12 807298 807695 + MGP_AJ_P0034293 Gm17728 protein_coding protein_coding MGP_AJ_T0006385.1 MGP_AJ_G0005321.1 mouse_genomes_project 12 205600 219101 - Gm26520 lincRNA lincRNA MGP_AJ_T0035098.1 MGP_AJ_G0019823.1 mouse_genomes_project 12 73988617 73991839 - MGP_AJ_P0035098 protein_coding protein_coding MGP_AJ_T0006501.1 MGP_AJ_G0005399.1 mouse_genomes_project 12 109296599 109299192 + A230087F16Rik lincRNA lincRNA MGP_AJ_T0006502.1 MGP_AJ_G0005399.1 mouse_genomes_project 12 109296621 109305702 + A230087F16Rik lincRNA lincRNA MGP_AJ_T0099401.1 MGP_AJ_G0037367.1 mouse_genomes_project 12 49618919 49619026 - Gm23296 snRNA snRNA MGP_AJ_T0034518.1 MGP_AJ_G0019615.1 mouse_genomes_project 12 26636533 27043741 + MGP_AJ_P0034518 Myt1l protein_coding protein_coding MGP_AJ_T0034519.1 MGP_AJ_G0019615.1 mouse_genomes_project 12 26643018 27043741 + MGP_AJ_P0034519 Myt1l protein_coding protein_coding MGP_AJ_T0035382.1 MGP_AJ_G0019909.1 mouse_genomes_project 12 82614183 82640370 + MGP_AJ_P0035382 Dlst protein_coding protein_coding MGP_AJ_T0012805.1 MGP_AJ_G0010900.1 mouse_genomes_project 12 28140133 28151552 + processed_pseudogene processed_pseudogene MGP_AJ_T0011339.1 MGP_AJ_G0009461.1 mouse_genomes_project 12 107462070 107462153 + Gm27596 misc_RNA misc_RNA MGP_AJ_T0035566.1 MGP_AJ_G0019961.1 mouse_genomes_project 12 96262929 96303527 + MGP_AJ_P0035566 Spata7 protein_coding protein_coding MGP_AJ_T0035567.1 MGP_AJ_G0019961.1 mouse_genomes_project 12 96262934 96273853 + Spata7 protein_coding retained_intron MGP_AJ_T0035568.1 MGP_AJ_G0019961.1 mouse_genomes_project 12 96262939 96303527 + MGP_AJ_P0035568 Spata7 protein_coding protein_coding MGP_AJ_T0035569.1 MGP_AJ_G0019961.1 mouse_genomes_project 12 96262962 96267526 + Spata7 protein_coding retained_intron MGP_AJ_T0035570.1 MGP_AJ_G0019961.1 mouse_genomes_project 12 96262969 96303524 + MGP_AJ_P0035570 Spata7 protein_coding protein_coding MGP_AJ_T0035571.1 MGP_AJ_G0019961.1 mouse_genomes_project 12 96297993 96302990 + Spata7 protein_coding retained_intron MGP_AJ_T0098912.1 MGP_AJ_G0036892.1 mouse_genomes_project 12 82422202 82423173 - Gm17193 sense_intronic sense_intronic MGP_AJ_T0035616.1 MGP_AJ_G0019974.1 mouse_genomes_project 12 98185029 98370329 - MGP_AJ_P0035616 Rps6ka5 protein_coding unknown_likely_coding MGP_AJ_T0035617.1 MGP_AJ_G0019974.1 mouse_genomes_project 12 98186372 98370477 - MGP_AJ_P0035617 Rps6ka5 protein_coding protein_coding MGP_AJ_T0034628.1 MGP_AJ_G0019652.1 mouse_genomes_project 12 33141080 33146190 + Agr2 protein_coding retained_intron MGP_AJ_T0034629.1 MGP_AJ_G0019652.1 mouse_genomes_project 12 33141080 33152196 + MGP_AJ_P0034629 Agr2 protein_coding protein_coding MGP_AJ_T0035342.1 MGP_AJ_G0019896.1 mouse_genomes_project 12 81935699 82019561 + MGP_AJ_P0035342 Lin52 protein_coding protein_coding MGP_AJ_T0003423.1 MGP_AJ_G0003139.1 mouse_genomes_project 12 108590302 108590819 - Gm17111 antisense antisense MGP_AJ_T0034520.1 MGP_AJ_G0019616.1 mouse_genomes_project 12 27059187 27138747 + MGP_AJ_P0034520 Pxdn protein_coding protein_coding MGP_AJ_T0034521.1 MGP_AJ_G0019616.1 mouse_genomes_project 12 27059201 27111048 + Pxdn protein_coding retained_intron MGP_AJ_T0034522.1 MGP_AJ_G0019616.1 mouse_genomes_project 12 27059201 27110496 + MGP_AJ_P0034522 Pxdn protein_coding protein_coding MGP_AJ_T0034523.1 MGP_AJ_G0019616.1 mouse_genomes_project 12 27117945 27123858 + Pxdn protein_coding processed_transcript MGP_AJ_T0034524.1 MGP_AJ_G0019616.1 mouse_genomes_project 12 27117951 27121301 + Pxdn protein_coding retained_intron MGP_AJ_T0034525.1 MGP_AJ_G0019616.1 mouse_genomes_project 12 27121329 27124000 + Pxdn protein_coding retained_intron MGP_AJ_T0012857.1 MGP_AJ_G0010952.1 mouse_genomes_project 12 104437293 104438783 - processed_pseudogene processed_pseudogene MGP_AJ_T0036020.1 MGP_AJ_G0020118.1 mouse_genomes_project 12 110842862 110851958 - MGP_AJ_P0036020 Cdca4 protein_coding protein_coding MGP_AJ_T0099418.1 MGP_AJ_G0037384.1 mouse_genomes_project 12 67120520 67120623 - Gm23579 snRNA snRNA MGP_AJ_T0035945.1 MGP_AJ_G0020094.1 mouse_genomes_project 12 109700489 109707066 + MGP_AJ_P0035945 Trmt61a protein_coding protein_coding MGP_AJ_T0035946.1 MGP_AJ_G0020094.1 mouse_genomes_project 12 109700489 109707066 + MGP_AJ_P0035946 Trmt61a protein_coding protein_coding MGP_AJ_T0035155.1 MGP_AJ_G0019845.1 mouse_genomes_project 12 77777066 77871323 - MGP_AJ_P0035155 Dcaf5 protein_coding protein_coding MGP_AJ_T0099397.1 MGP_AJ_G0037363.1 mouse_genomes_project 12 32604215 32604322 + Gm26071 snRNA snRNA MGP_AJ_T0012838.1 MGP_AJ_G0010933.1 mouse_genomes_project 12 79982878 79983121 + processed_pseudogene processed_pseudogene MGP_AJ_T0000868.1 MGP_AJ_G0000803.1 mouse_genomes_project 12 107593496 107602215 + TEC TEC MGP_AJ_T0034668.1 MGP_AJ_G0019666.1 mouse_genomes_project 12 37204017 37280509 - MGP_AJ_P0034668 Scin protein_coding protein_coding MGP_AJ_T0034669.1 MGP_AJ_G0019666.1 mouse_genomes_project 12 37204021 37280554 - MGP_AJ_P0034669 Scin protein_coding protein_coding MGP_AJ_T0034315.1 MGP_AJ_G0019536.1 mouse_genomes_project 12 1481526 1599684 + MGP_AJ_P0034315 Itsn2 protein_coding protein_coding MGP_AJ_T0034316.1 MGP_AJ_G0019536.1 mouse_genomes_project 12 1501788 1562219 + MGP_AJ_P0034316 Itsn2 protein_coding unknown_likely_coding MGP_AJ_T0035634.1 MGP_AJ_G0019978.1 mouse_genomes_project 12 98672369 98716614 - MGP_AJ_P0035634 Smek1 protein_coding protein_coding MGP_AJ_T0035635.1 MGP_AJ_G0019978.1 mouse_genomes_project 12 98672369 98716614 - MGP_AJ_P0035635 Smek1 protein_coding protein_coding MGP_AJ_T0035674.1 MGP_AJ_G0019991.1 mouse_genomes_project 12 100359678 100397149 - MGP_AJ_P0035674 Gm28051 protein_coding protein_coding MGP_AJ_T0009879.1 MGP_AJ_G0008001.1 mouse_genomes_project 12 107655197 107655275 + Mir544 miRNA miRNA MGP_AJ_T0035839.1 MGP_AJ_G0020060.1 mouse_genomes_project 12 106489844 106621019 + MGP_AJ_P0035839 Evl protein_coding protein_coding MGP_AJ_T0035840.1 MGP_AJ_G0020060.1 mouse_genomes_project 12 106489844 106621019 + MGP_AJ_P0035840 Evl protein_coding protein_coding MGP_AJ_T0035841.1 MGP_AJ_G0020060.1 mouse_genomes_project 12 106538140 106621019 + MGP_AJ_P0035841 Evl protein_coding protein_coding MGP_AJ_T0035842.1 MGP_AJ_G0020060.1 mouse_genomes_project 12 106568040 106621019 + MGP_AJ_P0035842 Evl protein_coding protein_coding MGP_AJ_T0000121.1 MGP_AJ_G0000092.1 mouse_genomes_project 12 113913501 113913944 - MGP_AJ_P0000121 IG_V_gene IG_V_gene MGP_AJ_T0000124.1 MGP_AJ_G0000092.1 mouse_genomes_project 12 113913517 113913918 - MGP_AJ_P0000124 IG_V_gene IG_V_gene MGP_AJ_T0009867.1 MGP_AJ_G0007989.1 mouse_genomes_project 12 107645884 107645976 + Mir667 miRNA miRNA MGP_AJ_T0011319.1 MGP_AJ_G0009441.1 mouse_genomes_project 12 1281484 1281770 + Gm22343 misc_RNA misc_RNA MGP_AJ_T0006500.1 MGP_AJ_G0005398.1 mouse_genomes_project 12 108833105 108836044 - Gm26912 lincRNA lincRNA MGP_AJ_T0100664.1 MGP_AJ_G0038630.1 mouse_genomes_project 12 56739367 56739498 - Gm24377 snoRNA snoRNA MGP_AJ_T0035435.1 MGP_AJ_G0019925.1 mouse_genomes_project 12 83595031 83678317 + MGP_AJ_P0035435 Ift43 protein_coding unknown_likely_coding MGP_AJ_T0035436.1 MGP_AJ_G0019925.1 mouse_genomes_project 12 83595037 83678310 + MGP_AJ_P0035436 Ift43 protein_coding protein_coding MGP_AJ_T0036048.1 MGP_AJ_G0020129.1 mouse_genomes_project 12 111164498 111172037 + Crip1 protein_coding processed_transcript MGP_AJ_T0036049.1 MGP_AJ_G0020129.1 mouse_genomes_project 12 111166876 111172004 + MGP_AJ_P0036049 Crip1 protein_coding protein_coding MGP_AJ_T0036050.1 MGP_AJ_G0020129.1 mouse_genomes_project 12 111170184 111172035 + MGP_AJ_P0036050 Crip1 protein_coding protein_coding MGP_AJ_T0036051.1 MGP_AJ_G0020129.1 mouse_genomes_project 12 111170225 111172037 + MGP_AJ_P0036051 Crip1 protein_coding protein_coding MGP_AJ_T0036052.1 MGP_AJ_G0020129.1 mouse_genomes_project 12 111170243 111172037 + Crip1 protein_coding retained_intron MGP_AJ_T0036053.1 MGP_AJ_G0020129.1 mouse_genomes_project 12 111170253 111172037 + Crip1 protein_coding retained_intron MGP_AJ_T0034591.1 MGP_AJ_G0019639.1 mouse_genomes_project 12 30073642 30098805 + MGP_AJ_P0034591 Sypl protein_coding protein_coding MGP_AJ_T0034592.1 MGP_AJ_G0019639.1 mouse_genomes_project 12 30073935 30096676 + MGP_AJ_P0034592 Sypl protein_coding protein_coding MGP_AJ_T0034593.1 MGP_AJ_G0019639.1 mouse_genomes_project 12 30073998 30093923 + MGP_AJ_P0034593 Sypl protein_coding nonsense_mediated_decay MGP_AJ_T0034594.1 MGP_AJ_G0019639.1 mouse_genomes_project 12 30074310 30087450 + Sypl protein_coding processed_transcript MGP_AJ_T0034595.1 MGP_AJ_G0019639.1 mouse_genomes_project 12 30085087 30090118 + Sypl protein_coding retained_intron MGP_AJ_T0034596.1 MGP_AJ_G0019639.1 mouse_genomes_project 12 30085167 30089217 + Sypl protein_coding processed_transcript MGP_AJ_T0009816.1 MGP_AJ_G0007938.1 mouse_genomes_project 12 88787200 88789465 + miRNA miRNA MGP_AJ_T0017292.1 MGP_AJ_G0015201.1 mouse_genomes_project 12 18095814 18099634 - Gm20535 processed_transcript processed_transcript MGP_AJ_T0000107.1 MGP_AJ_G0000084.1 mouse_genomes_project 12 112756380 112756815 - MGP_AJ_P0000107 Ighv15-2 IG_V_gene IG_V_gene MGP_AJ_T0000108.1 MGP_AJ_G0000084.1 mouse_genomes_project 12 112756380 112756815 - MGP_AJ_P0000108 Ighv15-2 IG_V_gene IG_V_gene MGP_AJ_T0100639.1 MGP_AJ_G0038605.1 mouse_genomes_project 12 6546540 6546668 - Gm23979 snoRNA snoRNA MGP_AJ_T0003415.1 MGP_AJ_G0003133.1 mouse_genomes_project 12 96976723 96998313 + 3300002A11Rik antisense antisense MGP_AJ_T0003416.1 MGP_AJ_G0003133.1 mouse_genomes_project 12 96981967 96998313 + 3300002A11Rik antisense antisense MGP_AJ_T0017305.1 MGP_AJ_G0015209.1 mouse_genomes_project 12 89309591 89320953 - Gm8378 processed_transcript processed_transcript MGP_AJ_T0017306.1 MGP_AJ_G0015209.1 mouse_genomes_project 12 89317462 89320998 - Gm8378 processed_transcript processed_transcript MGP_AJ_T0017307.1 MGP_AJ_G0015209.1 mouse_genomes_project 12 89319350 89320998 - Gm8378 processed_transcript processed_transcript MGP_AJ_T0099411.1 MGP_AJ_G0037377.1 mouse_genomes_project 12 57822519 57822626 + Gm23059 snRNA snRNA MGP_AJ_T0034509.1 MGP_AJ_G0019610.1 mouse_genomes_project 12 25754383 25759495 - MGP_AJ_P0034509 Rps7 protein_coding protein_coding MGP_AJ_T0034391.1 MGP_AJ_G0019567.1 mouse_genomes_project 12 8211084 8326362 - MGP_AJ_P0034391 Vsnl1 protein_coding protein_coding MGP_AJ_T0000075.1 MGP_AJ_G0000061.1 mouse_genomes_project 12 112319512 112319897 - MGP_AJ_P0000075 IG_V_gene IG_V_gene MGP_AJ_T0000232.1 MGP_AJ_G0000176.1 mouse_genomes_project 12 111625450 111625919 - IG_V_pseudogene IG_V_pseudogene MGP_AJ_T0034880.1 MGP_AJ_G0019744.1 mouse_genomes_project 12 66276578 66290559 + MGP_AJ_P0034880 Lrr1 protein_coding protein_coding MGP_AJ_T0009804.1 MGP_AJ_G0007926.1 mouse_genomes_project 12 73111825 73111908 + Mir5101 miRNA miRNA MGP_AJ_T0034432.1 MGP_AJ_G0019583.1 mouse_genomes_project 12 14084798 14089595 - MGP_AJ_P0034432 Kcnf1 protein_coding protein_coding MGP_AJ_T0100673.1 MGP_AJ_G0038639.1 mouse_genomes_project 12 75023709 75023839 - Gm24070 snoRNA snoRNA MGP_AJ_T0000852.1 MGP_AJ_G0000787.1 mouse_genomes_project 12 8106141 8106890 - TEC TEC MGP_AJ_T0034693.1 MGP_AJ_G0019674.1 mouse_genomes_project 12 41251182 41256563 - MGP_AJ_P0034693 Dnajb9 protein_coding protein_coding MGP_AJ_T0034312.1 MGP_AJ_G0019533.1 mouse_genomes_project 12 1117764 1124359 + MGP_AJ_P0034312 Ptrhd1 protein_coding protein_coding MGP_AJ_T0035977.1 MGP_AJ_G0020102.1 mouse_genomes_project 12 110002790 110090241 + MGP_AJ_P0035977 Tdrd9 protein_coding protein_coding MGP_AJ_T0035978.1 MGP_AJ_G0020102.1 mouse_genomes_project 12 110002873 110089832 + MGP_AJ_P0035978 Tdrd9 protein_coding unknown_likely_coding MGP_AJ_T0035984.1 MGP_AJ_G0020102.1 mouse_genomes_project 12 110012775 110089832 + MGP_AJ_P0035984 Tdrd9 protein_coding unknown_likely_coding MGP_AJ_T0035985.1 MGP_AJ_G0020102.1 mouse_genomes_project 12 110024890 110089733 + MGP_AJ_P0035985 Tdrd9 protein_coding nonsense_mediated_decay MGP_AJ_T0035986.1 MGP_AJ_G0020102.1 mouse_genomes_project 12 110024890 110089733 + MGP_AJ_P0035986 Tdrd9 protein_coding nonsense_mediated_decay MGP_AJ_T0035987.1 MGP_AJ_G0020102.1 mouse_genomes_project 12 110043744 110051892 + Tdrd9 protein_coding retained_intron MGP_AJ_T0035988.1 MGP_AJ_G0020102.1 mouse_genomes_project 12 110052335 110067172 + Tdrd9 protein_coding processed_transcript MGP_AJ_T0035989.1 MGP_AJ_G0020102.1 mouse_genomes_project 12 110083331 110087937 + Tdrd9 protein_coding retained_intron MGP_AJ_T0012831.1 MGP_AJ_G0010926.1 mouse_genomes_project 12 75936036 75936185 - processed_pseudogene processed_pseudogene MGP_AJ_T0035166.1 MGP_AJ_G0019852.1 mouse_genomes_project 12 78234261 78328482 + MGP_AJ_P0035166 Susd6 protein_coding protein_coding MGP_AJ_T0035167.1 MGP_AJ_G0019852.1 mouse_genomes_project 12 78234330 78328489 + MGP_AJ_P0035167 Susd6 protein_coding unknown_likely_coding MGP_AJ_T0000029.1 MGP_AJ_G0000021.1 mouse_genomes_project 12 111487509 111487519 - MGP_AJ_P0000029 Ighd5-4 IG_D_gene IG_D_gene MGP_AJ_T0035997.1 MGP_AJ_G0020110.1 mouse_genomes_project 12 110649160 110671213 + MGP_AJ_P0035997 Adssl1 protein_coding protein_coding MGP_AJ_T0035998.1 MGP_AJ_G0020110.1 mouse_genomes_project 12 110649162 110671228 + MGP_AJ_P0035998 Adssl1 protein_coding protein_coding MGP_AJ_T0034510.1 MGP_AJ_G0019611.1 mouse_genomes_project 12 25773711 25783329 + MGP_AJ_P0034510 Rnaseh1 protein_coding protein_coding MGP_AJ_T0034671.1 MGP_AJ_G0019668.1 mouse_genomes_project 12 37347756 37369340 - MGP_AJ_P0034671 Ifrd1 protein_coding protein_coding MGP_AJ_T0034672.1 MGP_AJ_G0019668.1 mouse_genomes_project 12 37349320 37353239 - MGP_AJ_P0034672 Ifrd1 protein_coding protein_coding MGP_AJ_T0034673.1 MGP_AJ_G0019668.1 mouse_genomes_project 12 37349509 37350832 - Ifrd1 protein_coding retained_intron MGP_AJ_T0034674.1 MGP_AJ_G0019668.1 mouse_genomes_project 12 37350108 37369113 - MGP_AJ_P0034674 Ifrd1 protein_coding nonsense_mediated_decay MGP_AJ_T0034675.1 MGP_AJ_G0019668.1 mouse_genomes_project 12 37360156 37394213 - MGP_AJ_P0034675 Ifrd1 protein_coding protein_coding MGP_AJ_T0034676.1 MGP_AJ_G0019668.1 mouse_genomes_project 12 37360213 37363690 - MGP_AJ_P0034676 Ifrd1 protein_coding protein_coding MGP_AJ_T0034677.1 MGP_AJ_G0019668.1 mouse_genomes_project 12 37360270 37394620 - MGP_AJ_P0034677 Ifrd1 protein_coding protein_coding MGP_AJ_T0034678.1 MGP_AJ_G0019668.1 mouse_genomes_project 12 37361538 37369336 - Ifrd1 protein_coding retained_intron MGP_AJ_T0034679.1 MGP_AJ_G0019668.1 mouse_genomes_project 12 37362365 37394638 - MGP_AJ_P0034679 Ifrd1 protein_coding protein_coding MGP_AJ_T0034680.1 MGP_AJ_G0019668.1 mouse_genomes_project 12 37363334 37369300 - MGP_AJ_P0034680 Ifrd1 protein_coding protein_coding MGP_AJ_T0034633.1 MGP_AJ_G0019654.1 mouse_genomes_project 12 33245200 33246646 + MGP_AJ_P0034633 Gm5434 protein_coding protein_coding MGP_AJ_T0036024.1 MGP_AJ_G0020122.1 mouse_genomes_project 12 110976737 111018760 - MGP_AJ_P0036024 Brf1 protein_coding protein_coding MGP_AJ_T0036025.1 MGP_AJ_G0020122.1 mouse_genomes_project 12 110977196 110990434 - MGP_AJ_P0036025 Brf1 protein_coding unknown_likely_coding MGP_AJ_T0035408.1 MGP_AJ_G0019920.1 mouse_genomes_project 12 83193621 83216689 + MGP_AJ_P0035408 Batf protein_coding protein_coding MGP_AJ_T0036102.1 MGP_AJ_G0020148.1 mouse_genomes_project 12 118451587 118515983 + MGP_AJ_P0036102 Tmem196 protein_coding protein_coding MGP_AJ_T0036103.1 MGP_AJ_G0020148.1 mouse_genomes_project 12 118452039 118515585 + MGP_AJ_P0036103 Tmem196 protein_coding protein_coding MGP_AJ_T0036104.1 MGP_AJ_G0020148.1 mouse_genomes_project 12 118452053 118511657 + MGP_AJ_P0036104 Tmem196 protein_coding nonsense_mediated_decay MGP_AJ_T0036105.1 MGP_AJ_G0020148.1 mouse_genomes_project 12 118452187 118515478 + MGP_AJ_P0036105 Tmem196 protein_coding protein_coding MGP_AJ_T0036106.1 MGP_AJ_G0020148.1 mouse_genomes_project 12 118452199 118515826 + MGP_AJ_P0036106 Tmem196 protein_coding protein_coding MGP_AJ_T0003412.1 MGP_AJ_G0003130.1 mouse_genomes_project 12 82589715 82591570 + Prox2os antisense antisense MGP_AJ_T0000239.1 MGP_AJ_G0000183.1 mouse_genomes_project 12 112071370 112072778 - IG_V_pseudogene IG_V_pseudogene MGP_AJ_T0000039.1 MGP_AJ_G0000031.1 mouse_genomes_project 12 111465976 111466024 - MGP_AJ_P0000039 Ighj3 IG_J_gene IG_J_gene MGP_AJ_T0100704.1 MGP_AJ_G0038670.1 mouse_genomes_project 12 107607856 107607931 + Gm25856 snoRNA snoRNA MGP_AJ_T0009810.1 MGP_AJ_G0007932.1 mouse_genomes_project 12 83226072 83226133 - miRNA miRNA MGP_AJ_T0034575.1 MGP_AJ_G0019634.1 mouse_genomes_project 12 29055818 29080077 - MGP_AJ_P0034575 Hbp1 protein_coding protein_coding MGP_AJ_T0034576.1 MGP_AJ_G0019634.1 mouse_genomes_project 12 29058944 29079765 - MGP_AJ_P0034576 Hbp1 protein_coding protein_coding MGP_AJ_T0034577.1 MGP_AJ_G0019634.1 mouse_genomes_project 12 29060368 29069963 - MGP_AJ_P0034577 Hbp1 protein_coding protein_coding MGP_AJ_T0034578.1 MGP_AJ_G0019634.1 mouse_genomes_project 12 29060479 29064359 - Hbp1 protein_coding retained_intron MGP_AJ_T0034579.1 MGP_AJ_G0019634.1 mouse_genomes_project 12 29062388 29079150 - MGP_AJ_P0034579 Hbp1 protein_coding protein_coding MGP_AJ_T0034580.1 MGP_AJ_G0019634.1 mouse_genomes_project 12 29063897 29079712 - MGP_AJ_P0034580 Hbp1 protein_coding protein_coding MGP_AJ_T0034581.1 MGP_AJ_G0019634.1 mouse_genomes_project 12 29066015 29079763 - MGP_AJ_P0034581 Hbp1 protein_coding protein_coding MGP_AJ_T0034582.1 MGP_AJ_G0019634.1 mouse_genomes_project 12 29066601 29079752 - MGP_AJ_P0034582 Hbp1 protein_coding protein_coding MGP_AJ_T0034583.1 MGP_AJ_G0019634.1 mouse_genomes_project 12 29069306 29079776 - Hbp1 protein_coding retained_intron MGP_AJ_T0009791.1 MGP_AJ_G0007913.1 mouse_genomes_project 12 37368862 37368962 - Mir1938 miRNA miRNA MGP_AJ_T0098567.1 MGP_AJ_G0036551.1 mouse_genomes_project 12 94981551 94981631 - Gm23558 rRNA rRNA MGP_AJ_T0009838.1 MGP_AJ_G0007960.1 mouse_genomes_project 12 107511756 107511845 + Mir3070b miRNA miRNA MGP_AJ_T0000009.1 MGP_AJ_G0000006.1 mouse_genomes_project 12 111337741 111339390 - MGP_AJ_P0000009 Ighg2b IG_C_gene IG_C_gene MGP_AJ_T0035995.1 MGP_AJ_G0020108.1 mouse_genomes_project 12 110527272 110538278 - MGP_AJ_P0035995 Tmem179 protein_coding protein_coding MGP_AJ_T0006445.1 MGP_AJ_G0005369.1 mouse_genomes_project 12 97202901 97263766 + Gm26839 lincRNA lincRNA MGP_AJ_T0003378.1 MGP_AJ_G0003103.1 mouse_genomes_project 12 268997 294314 - 1110002L01Rik antisense antisense MGP_AJ_T0003379.1 MGP_AJ_G0003103.1 mouse_genomes_project 12 270429 294043 - 1110002L01Rik antisense antisense MGP_AJ_T0003380.1 MGP_AJ_G0003103.1 mouse_genomes_project 12 272106 294017 - 1110002L01Rik antisense antisense MGP_AJ_T0003381.1 MGP_AJ_G0003103.1 mouse_genomes_project 12 272624 294050 - 1110002L01Rik antisense antisense MGP_AJ_T0003405.1 MGP_AJ_G0003123.1 mouse_genomes_project 12 78679302 78695540 + Gm3693 antisense antisense MGP_AJ_T0035444.1 MGP_AJ_G0019928.1 mouse_genomes_project 12 84206453 84219851 + MGP_AJ_P0035444 Vash1 protein_coding protein_coding MGP_AJ_T0099403.1 MGP_AJ_G0037369.1 mouse_genomes_project 12 51278771 51278917 - Gm24692 snRNA snRNA MGP_AJ_T0034544.1 MGP_AJ_G0019623.1 mouse_genomes_project 12 28193480 28199309 + MGP_AJ_P0034544 Fam110c protein_coding protein_coding MGP_AJ_T0035049.1 MGP_AJ_G0019806.1 mouse_genomes_project 12 72642174 72793169 - MGP_AJ_P0035049 Ppp2r5e protein_coding protein_coding MGP_AJ_T0009870.1 MGP_AJ_G0007992.1 mouse_genomes_project 12 107649330 107649412 + Mir376b miRNA miRNA MGP_AJ_T0003419.1 MGP_AJ_G0003136.1 mouse_genomes_project 12 100953510 100955149 - Gm29508 antisense antisense MGP_AJ_T0003420.1 MGP_AJ_G0003136.1 mouse_genomes_project 12 100953511 100955911 - Gm29508 antisense antisense MGP_AJ_T0006465.1 MGP_AJ_G0005385.1 mouse_genomes_project 12 105057356 105071323 - Gm16084 lincRNA lincRNA MGP_AJ_T0000243.1 MGP_AJ_G0000187.1 mouse_genomes_project 12 112357907 112358183 - IG_V_pseudogene IG_V_pseudogene MGP_AJ_T0035683.1 MGP_AJ_G0019998.1 mouse_genomes_project 12 100536518 100537747 + MGP_AJ_P0035683 Cox8c protein_coding protein_coding MGP_AJ_T0034546.1 MGP_AJ_G0019625.1 mouse_genomes_project 12 28382379 28385944 + Lamb1 protein_coding retained_intron MGP_AJ_T0034547.1 MGP_AJ_G0019625.1 mouse_genomes_project 12 28382382 28383878 + MGP_AJ_P0034547 Lamb1 protein_coding protein_coding MGP_AJ_T0034548.1 MGP_AJ_G0019625.1 mouse_genomes_project 12 28382485 28446694 + MGP_AJ_P0034548 Lamb1 protein_coding nonsense_mediated_decay MGP_AJ_T0034549.1 MGP_AJ_G0019625.1 mouse_genomes_project 12 28382506 28446612 + MGP_AJ_P0034549 Lamb1 protein_coding protein_coding MGP_AJ_T0034550.1 MGP_AJ_G0019625.1 mouse_genomes_project 12 28393715 28405082 + Lamb1 protein_coding retained_intron MGP_AJ_T0034551.1 MGP_AJ_G0019625.1 mouse_genomes_project 12 28395234 28395999 + Lamb1 protein_coding retained_intron MGP_AJ_T0034552.1 MGP_AJ_G0019625.1 mouse_genomes_project 12 28440641 28441575 + Lamb1 protein_coding retained_intron MGP_AJ_T0035642.1 MGP_AJ_G0019982.1 mouse_genomes_project 12 99462203 99542845 - MGP_AJ_P0035642 Trip11 protein_coding protein_coding MGP_AJ_T0035643.1 MGP_AJ_G0019982.1 mouse_genomes_project 12 99465706 99522504 - MGP_AJ_P0035643 Trip11 protein_coding protein_coding MGP_AJ_T0035644.1 MGP_AJ_G0019982.1 mouse_genomes_project 12 99501738 99511792 - MGP_AJ_P0035644 Trip11 protein_coding nonsense_mediated_decay MGP_AJ_T0035645.1 MGP_AJ_G0019982.1 mouse_genomes_project 12 99514404 99542701 - MGP_AJ_P0035645 Trip11 protein_coding protein_coding MGP_AJ_T0035646.1 MGP_AJ_G0019982.1 mouse_genomes_project 12 99517933 99542718 - MGP_AJ_P0035646 Trip11 protein_coding protein_coding MGP_AJ_T0035647.1 MGP_AJ_G0019982.1 mouse_genomes_project 12 99541853 99542733 - Trip11 protein_coding processed_transcript MGP_AJ_T0012828.1 MGP_AJ_G0010923.1 mouse_genomes_project 12 71133217 71133514 + processed_pseudogene processed_pseudogene MGP_AJ_T0003413.1 MGP_AJ_G0003131.1 mouse_genomes_project 12 88723752 88747524 + 5430427M07Rik antisense antisense MGP_AJ_T0034722.1 MGP_AJ_G0019686.1 mouse_genomes_project 12 48618582 48631010 + MGP_AJ_P0034722 Coch protein_coding protein_coding MGP_AJ_T0034723.1 MGP_AJ_G0019686.1 mouse_genomes_project 12 48618582 48631010 + MGP_AJ_P0034723 Coch protein_coding protein_coding MGP_AJ_T0009851.1 MGP_AJ_G0007973.1 mouse_genomes_project 12 107634933 107634999 + Mir379 miRNA miRNA MGP_AJ_T0099416.1 MGP_AJ_G0037382.1 mouse_genomes_project 12 66260049 66260153 - Gm24499 snRNA snRNA MGP_AJ_T0000013.1 MGP_AJ_G0000009.1 mouse_genomes_project 12 111444272 111453880 - MGP_AJ_P0000013 Ighd IG_C_gene IG_C_gene MGP_AJ_T0000014.1 MGP_AJ_G0000009.1 mouse_genomes_project 12 111447222 111453880 - MGP_AJ_P0000014 Ighd IG_C_gene IG_C_gene MGP_AJ_T0036061.1 MGP_AJ_G0000009.1 mouse_genomes_project 12 111445191 111453713 - MGP_AJ_P0036061 Ighd IG_C_gene unknown_likely_coding MGP_AJ_T0036062.1 MGP_AJ_G0000009.1 mouse_genomes_project 12 111445191 111453857 - MGP_AJ_P0036062 Ighd IG_C_gene unknown_likely_coding MGP_AJ_T0000125.1 MGP_AJ_G0000094.1 mouse_genomes_project 12 114351492 114351777 - MGP_AJ_P0000125 Ighv1-78 IG_V_gene IG_V_gene MGP_AJ_T0035168.1 MGP_AJ_G0019853.1 mouse_genomes_project 12 78388822 78395606 + Srsf5 protein_coding retained_intron MGP_AJ_T0035169.1 MGP_AJ_G0019853.1 mouse_genomes_project 12 78388834 78395606 + Srsf5 protein_coding retained_intron MGP_AJ_T0035170.1 MGP_AJ_G0019853.1 mouse_genomes_project 12 78388836 78390151 + Srsf5 protein_coding processed_transcript MGP_AJ_T0035171.1 MGP_AJ_G0019853.1 mouse_genomes_project 12 78388850 78392361 + Srsf5 protein_coding processed_transcript MGP_AJ_T0035172.1 MGP_AJ_G0019853.1 mouse_genomes_project 12 78388872 78391385 + MGP_AJ_P0035172 Srsf5 protein_coding nonsense_mediated_decay MGP_AJ_T0035173.1 MGP_AJ_G0019853.1 mouse_genomes_project 12 78388881 78390274 + Srsf5 protein_coding processed_transcript MGP_AJ_T0035174.1 MGP_AJ_G0019853.1 mouse_genomes_project 12 78388887 78395606 + MGP_AJ_P0035174 Srsf5 protein_coding protein_coding MGP_AJ_T0035175.1 MGP_AJ_G0019853.1 mouse_genomes_project 12 78389678 78395600 + Srsf5 protein_coding retained_intron MGP_AJ_T0009820.1 MGP_AJ_G0007942.1 mouse_genomes_project 12 99182160 99182270 + Gm24542 miRNA miRNA MGP_AJ_T0034921.1 MGP_AJ_G0019761.1 mouse_genomes_project 12 67020055 67089912 + MGP_AJ_P0034921 Atl1 protein_coding protein_coding MGP_AJ_T0035245.1 MGP_AJ_G0019871.1 mouse_genomes_project 12 80998677 81050694 - MGP_AJ_P0035245 Zfyve1 protein_coding protein_coding MGP_AJ_T0034498.1 MGP_AJ_G0019604.1 mouse_genomes_project 12 23546599 23560296 - MGP_AJ_P0034498 Rsad2 protein_coding nonsense_mediated_decay MGP_AJ_T0034499.1 MGP_AJ_G0019604.1 mouse_genomes_project 12 23546599 23560317 - MGP_AJ_P0034499 Rsad2 protein_coding protein_coding MGP_AJ_T0034500.1 MGP_AJ_G0019604.1 mouse_genomes_project 12 23554495 23558725 - Rsad2 protein_coding processed_transcript MGP_AJ_T0098392.1 MGP_AJ_G0036376.1 mouse_genomes_project 12 32136761 32138379 + pseudogene pseudogene MGP_AJ_T0003383.1 MGP_AJ_G0003105.1 mouse_genomes_project 12 733941 736893 - Dnmt3aos antisense antisense MGP_AJ_T0100677.1 MGP_AJ_G0038643.1 mouse_genomes_project 12 80208568 80208704 - Gm22149 snoRNA snoRNA MGP_AJ_T0035900.1 MGP_AJ_G0020077.1 mouse_genomes_project 12 108797302 108831769 - Mok protein_coding retained_intron MGP_AJ_T0035901.1 MGP_AJ_G0020077.1 mouse_genomes_project 12 108797302 108831760 - MGP_AJ_P0035901 Mok protein_coding protein_coding MGP_AJ_T0035902.1 MGP_AJ_G0020077.1 mouse_genomes_project 12 108797302 108831769 - MGP_AJ_P0035902 Mok protein_coding protein_coding MGP_AJ_T0035903.1 MGP_AJ_G0020077.1 mouse_genomes_project 12 108797545 108831582 - MGP_AJ_P0035903 Mok protein_coding unknown_likely_coding MGP_AJ_T0035904.1 MGP_AJ_G0020077.1 mouse_genomes_project 12 108804346 108831757 - MGP_AJ_P0035904 Mok protein_coding protein_coding MGP_AJ_T0006450.1 MGP_AJ_G0005374.1 mouse_genomes_project 12 100359680 100366853 - Gm21971 lincRNA lincRNA MGP_AJ_T0034570.1 MGP_AJ_G0019632.1 mouse_genomes_project 12 28774860 29067186 + MGP_AJ_P0034570 Cog5 protein_coding protein_coding MGP_AJ_T0034574.1 MGP_AJ_G0019632.1 mouse_genomes_project 12 28886194 29055324 + MGP_AJ_P0034574 Cog5 protein_coding unknown_likely_coding MGP_AJ_T0034459.1 MGP_AJ_G0019591.1 mouse_genomes_project 12 18160943 18168169 + MGP_AJ_P0034459 Iah1 protein_coding protein_coding MGP_AJ_T0006469.1 MGP_AJ_G0005388.1 mouse_genomes_project 12 105671220 105711093 - Gm15208 lincRNA lincRNA MGP_AJ_T0006455.1 MGP_AJ_G0005378.1 mouse_genomes_project 12 104329910 104335554 - 1700121N20Rik lincRNA lincRNA MGP_AJ_T0006433.1 MGP_AJ_G0005357.1 mouse_genomes_project 12 78365771 78366789 - 1700052I22Rik lincRNA lincRNA MGP_AJ_T0003387.1 MGP_AJ_G0003109.1 mouse_genomes_project 12 37182025 37183958 + Arl4aos antisense antisense MGP_AJ_T0003409.1 MGP_AJ_G0003127.1 mouse_genomes_project 12 80499713 80536636 - Gm29530 antisense antisense MGP_AJ_T0034406.1 MGP_AJ_G0019577.1 mouse_genomes_project 12 13554954 13561671 + MGP_AJ_P0034406 Ntsr2 protein_coding protein_coding MGP_AJ_T0034491.1 MGP_AJ_G0019600.1 mouse_genomes_project 12 21900808 22029763 + MGP_AJ_P0034491 Mboat2 protein_coding protein_coding MGP_AJ_T0034492.1 MGP_AJ_G0019600.1 mouse_genomes_project 12 21900808 22029763 + MGP_AJ_P0034492 Mboat2 protein_coding protein_coding MGP_AJ_T0101953.1 MGP_AJ_G0039794.1 mouse_genomes_project 12 102012012 102015544 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_AJ_T0000102.1 MGP_AJ_G0000079.1 mouse_genomes_project 12 112710565 112711772 - MGP_AJ_P0000102 Ighv1-5 IG_V_gene IG_V_gene MGP_AJ_T0035830.1 MGP_AJ_G0020057.1 mouse_genomes_project 12 106235318 106258583 + MGP_AJ_P0035830 Hhipl1 protein_coding protein_coding MGP_AJ_T0006448.1 MGP_AJ_G0005372.1 mouse_genomes_project 12 98574809 98582943 + A630072L19Rik lincRNA lincRNA MGP_AJ_T0035863.1 MGP_AJ_G0020068.1 mouse_genomes_project 12 107373852 107374816 + Dlk1 protein_coding retained_intron MGP_AJ_T0035864.1 MGP_AJ_G0020068.1 mouse_genomes_project 12 107373878 107384368 + MGP_AJ_P0035864 Dlk1 protein_coding protein_coding MGP_AJ_T0035865.1 MGP_AJ_G0020068.1 mouse_genomes_project 12 107374488 107381725 + MGP_AJ_P0035865 Dlk1 protein_coding protein_coding MGP_AJ_T0035866.1 MGP_AJ_G0020068.1 mouse_genomes_project 12 107374524 107381643 + MGP_AJ_P0035866 Dlk1 protein_coding protein_coding MGP_AJ_T0035867.1 MGP_AJ_G0020068.1 mouse_genomes_project 12 107374524 107381407 + MGP_AJ_P0035867 Dlk1 protein_coding protein_coding MGP_AJ_T0035868.1 MGP_AJ_G0020068.1 mouse_genomes_project 12 107374568 107384368 + MGP_AJ_P0035868 Dlk1 protein_coding protein_coding MGP_AJ_T0035869.1 MGP_AJ_G0020068.1 mouse_genomes_project 12 107374688 107384368 + MGP_AJ_P0035869 Dlk1 protein_coding protein_coding MGP_AJ_T0035870.1 MGP_AJ_G0020068.1 mouse_genomes_project 12 107374693 107381386 + MGP_AJ_P0035870 Dlk1 protein_coding protein_coding MGP_AJ_T0035871.1 MGP_AJ_G0020068.1 mouse_genomes_project 12 107375225 107380788 + MGP_AJ_P0035871 Dlk1 protein_coding protein_coding MGP_AJ_T0035872.1 MGP_AJ_G0020068.1 mouse_genomes_project 12 107380868 107381501 + MGP_AJ_P0035872 Dlk1 protein_coding protein_coding MGP_AJ_T0034318.1 MGP_AJ_G0019538.1 mouse_genomes_project 12 1599550 1624365 - MGP_AJ_P0034318 Fam228a protein_coding protein_coding MGP_AJ_T0006454.1 MGP_AJ_G0005377.1 mouse_genomes_project 12 104217719 104221169 + Gm17032 lincRNA lincRNA MGP_AJ_T0012809.1 MGP_AJ_G0010904.1 mouse_genomes_project 12 46857732 46858727 - processed_pseudogene processed_pseudogene MGP_AJ_T0099438.1 MGP_AJ_G0037404.1 mouse_genomes_project 12 116984405 116984512 - Gm25577 snRNA snRNA MGP_AJ_T0035679.1 MGP_AJ_G0019995.1 mouse_genomes_project 12 100392658 100397184 - MGP_AJ_P0035679 AK010878 protein_coding protein_coding MGP_AJ_T0035680.1 MGP_AJ_G0019995.1 mouse_genomes_project 12 100395664 100397187 - MGP_AJ_P0035680 AK010878 protein_coding protein_coding MGP_AJ_T0035371.1 MGP_AJ_G0019907.1 mouse_genomes_project 12 82498755 82573837 + MGP_AJ_P0035371 Ylpm1 protein_coding protein_coding MGP_AJ_T0035372.1 MGP_AJ_G0019907.1 mouse_genomes_project 12 82498786 82573860 + MGP_AJ_P0035372 Ylpm1 protein_coding protein_coding MGP_AJ_T0035373.1 MGP_AJ_G0019907.1 mouse_genomes_project 12 82498889 82573859 + MGP_AJ_P0035373 Ylpm1 protein_coding protein_coding MGP_AJ_T0035374.1 MGP_AJ_G0019907.1 mouse_genomes_project 12 82518045 82573837 + MGP_AJ_P0035374 Ylpm1 protein_coding nonsense_mediated_decay MGP_AJ_T0035375.1 MGP_AJ_G0019907.1 mouse_genomes_project 12 82545572 82562682 + Ylpm1 protein_coding retained_intron MGP_AJ_T0035376.1 MGP_AJ_G0019907.1 mouse_genomes_project 12 82553035 82553967 + Ylpm1 protein_coding retained_intron MGP_AJ_T0035377.1 MGP_AJ_G0019907.1 mouse_genomes_project 12 82563305 82573594 + Ylpm1 protein_coding retained_intron MGP_AJ_T0035378.1 MGP_AJ_G0019907.1 mouse_genomes_project 12 82568024 82573760 + Ylpm1 protein_coding retained_intron MGP_AJ_T0035564.1 MGP_AJ_G0019959.1 mouse_genomes_project 12 95912812 95920804 + MGP_AJ_P0035564 Gpr65 protein_coding protein_coding MGP_AJ_T0035464.1 MGP_AJ_G0019934.1 mouse_genomes_project 12 84564938 84637403 + MGP_AJ_P0035464 Tmem63c protein_coding nonsense_mediated_decay MGP_AJ_T0035465.1 MGP_AJ_G0019934.1 mouse_genomes_project 12 84569892 84637398 + MGP_AJ_P0035465 Tmem63c protein_coding protein_coding MGP_AJ_T0035466.1 MGP_AJ_G0019934.1 mouse_genomes_project 12 84570164 84637393 + MGP_AJ_P0035466 Tmem63c protein_coding protein_coding MGP_AJ_T0035467.1 MGP_AJ_G0019934.1 mouse_genomes_project 12 84570216 84604326 + MGP_AJ_P0035467 Tmem63c protein_coding protein_coding MGP_AJ_T0035468.1 MGP_AJ_G0019934.1 mouse_genomes_project 12 84584061 84637401 + MGP_AJ_P0035468 Tmem63c protein_coding protein_coding MGP_AJ_T0034449.1 MGP_AJ_G0019588.1 mouse_genomes_project 12 18014373 18113655 + MGP_AJ_P0034449 Asap2 protein_coding protein_coding MGP_AJ_T0034450.1 MGP_AJ_G0019588.1 mouse_genomes_project 12 18014373 18113655 + MGP_AJ_P0034450 Asap2 protein_coding protein_coding MGP_AJ_T0034451.1 MGP_AJ_G0019588.1 mouse_genomes_project 12 18014373 18113655 + MGP_AJ_P0034451 Asap2 protein_coding protein_coding MGP_AJ_T0034452.1 MGP_AJ_G0019588.1 mouse_genomes_project 12 18014373 18111852 + MGP_AJ_P0034452 Asap2 protein_coding protein_coding MGP_AJ_T0034390.1 MGP_AJ_G0019566.1 mouse_genomes_project 12 8149670 8205694 + MGP_AJ_P0034390 Smc6 protein_coding protein_coding MGP_AJ_T0099391.1 MGP_AJ_G0037357.1 mouse_genomes_project 12 10405865 10405972 - Gm24142 snRNA snRNA MGP_AJ_T0100694.1 MGP_AJ_G0038660.1 mouse_genomes_project 12 107576610 107576682 + Gm23508 snoRNA snoRNA MGP_AJ_T0000233.1 MGP_AJ_G0000177.1 mouse_genomes_project 12 111626762 111627199 - IG_V_pseudogene IG_V_pseudogene MGP_AJ_T0012819.1 MGP_AJ_G0010914.1 mouse_genomes_project 12 56377981 56378956 + processed_pseudogene processed_pseudogene MGP_AJ_T0012836.1 MGP_AJ_G0010931.1 mouse_genomes_project 12 78853854 78854166 + processed_pseudogene processed_pseudogene MGP_AJ_T0035359.1 MGP_AJ_G0019904.1 mouse_genomes_project 12 82374900 82377264 + MGP_AJ_P0035359 D030025P21Rik protein_coding protein_coding MGP_AJ_T0006442.1 MGP_AJ_G0005366.1 mouse_genomes_project 12 88420464 88433630 + Gm26512 lincRNA lincRNA MGP_AJ_T0036078.1 MGP_AJ_G0020138.1 mouse_genomes_project 12 114917313 114971746 + MGP_AJ_P0036078 Ncapg2 protein_coding protein_coding MGP_AJ_T0034380.1 MGP_AJ_G0019560.1 mouse_genomes_project 12 6484385 6491435 + MGP_AJ_P0034380 Osr1 protein_coding protein_coding MGP_AJ_T0034775.1 MGP_AJ_G0019710.1 mouse_genomes_project 12 52696275 52699377 + MGP_AJ_P0034775 Insm2 protein_coding protein_coding MGP_AJ_T0012835.1 MGP_AJ_G0010930.1 mouse_genomes_project 12 77542645 77543540 - processed_pseudogene processed_pseudogene MGP_AJ_T0012807.1 MGP_AJ_G0010902.1 mouse_genomes_project 12 41923076 41924262 + processed_pseudogene processed_pseudogene MGP_AJ_T0003390.1 MGP_AJ_G0003112.1 mouse_genomes_project 12 51092073 51109377 - 1700060O08Rik antisense antisense MGP_AJ_T0035764.1 MGP_AJ_G0020028.1 mouse_genomes_project 12 102100749 102108408 + MGP_AJ_P0035764 Serpina3k protein_coding protein_coding MGP_AJ_T0009801.1 MGP_AJ_G0007923.1 mouse_genomes_project 12 66886255 66886365 - Mir681 miRNA miRNA MGP_AJ_T0034713.1 MGP_AJ_G0019682.1 mouse_genomes_project 12 46421312 46421873 + MGP_AJ_P0034713 Gm9804 protein_coding protein_coding MGP_AJ_T0034392.1 MGP_AJ_G0019568.1 mouse_genomes_project 12 8345794 8353217 + MGP_AJ_P0034392 Rad51ap2 protein_coding protein_coding MGP_AJ_T0011326.1 MGP_AJ_G0009448.1 mouse_genomes_project 12 58974896 58975209 + Gm23213 misc_RNA misc_RNA MGP_AJ_T0000015.1 MGP_AJ_G0000010.1 mouse_genomes_project 12 111456085 111460236 - MGP_AJ_P0000015 Ighm IG_C_gene IG_C_gene MGP_AJ_T0000016.1 MGP_AJ_G0000010.1 mouse_genomes_project 12 111458244 111460236 - MGP_AJ_P0000016 Ighm IG_C_gene IG_C_gene MGP_AJ_T0036063.1 MGP_AJ_G0000010.1 mouse_genomes_project 12 111456353 111460162 - MGP_AJ_P0036063 Ighm IG_C_gene unknown_likely_coding MGP_AJ_T0003407.1 MGP_AJ_G0003125.1 mouse_genomes_project 12 79060710 79062559 + Gm16572 antisense antisense MGP_AJ_T0034545.1 MGP_AJ_G0019624.1 mouse_genomes_project 12 28299073 28299628 + MGP_AJ_P0034545 6030469F06Rik protein_coding protein_coding MGP_AJ_T0000241.1 MGP_AJ_G0000185.1 mouse_genomes_project 12 112101935 112102233 - IG_V_pseudogene IG_V_pseudogene MGP_AJ_T0034964.1 MGP_AJ_G0019775.1 mouse_genomes_project 12 68268457 68371811 + MGP_AJ_P0034964 2700049A03Rik protein_coding protein_coding MGP_AJ_T0034965.1 MGP_AJ_G0019775.1 mouse_genomes_project 12 68268457 68371811 + MGP_AJ_P0034965 2700049A03Rik protein_coding protein_coding MGP_AJ_T0034966.1 MGP_AJ_G0019775.1 mouse_genomes_project 12 68282049 68286474 + MGP_AJ_P0034966 2700049A03Rik protein_coding nonsense_mediated_decay MGP_AJ_T0034967.1 MGP_AJ_G0019775.1 mouse_genomes_project 12 68302734 68371807 + MGP_AJ_P0034967 2700049A03Rik protein_coding protein_coding MGP_AJ_T0035887.1 MGP_AJ_G0020074.1 mouse_genomes_project 12 108615833 108622910 - MGP_AJ_P0035887 Hsp90aa1 protein_coding protein_coding MGP_AJ_T0035888.1 MGP_AJ_G0020074.1 mouse_genomes_project 12 108619229 108619701 - Hsp90aa1 protein_coding retained_intron MGP_AJ_T0035889.1 MGP_AJ_G0020074.1 mouse_genomes_project 12 108620180 108620817 - Hsp90aa1 protein_coding retained_intron MGP_AJ_T0035890.1 MGP_AJ_G0020074.1 mouse_genomes_project 12 108620699 108622201 - Hsp90aa1 protein_coding retained_intron MGP_AJ_T0035891.1 MGP_AJ_G0020074.1 mouse_genomes_project 12 108621153 108629861 - MGP_AJ_P0035891 Hsp90aa1 protein_coding protein_coding MGP_AJ_T0035892.1 MGP_AJ_G0020074.1 mouse_genomes_project 12 108621798 108622773 - MGP_AJ_P0035892 Hsp90aa1 protein_coding protein_coding MGP_AJ_T0035893.1 MGP_AJ_G0020074.1 mouse_genomes_project 12 108621814 108622478 - MGP_AJ_P0035893 Hsp90aa1 protein_coding protein_coding MGP_AJ_T0100648.1 MGP_AJ_G0038614.1 mouse_genomes_project 12 28174970 28175103 + Gm25408 snoRNA snoRNA MGP_AJ_T0009794.1 MGP_AJ_G0007916.1 mouse_genomes_project 12 52917166 52917257 - Gm23394 miRNA miRNA MGP_AJ_T0000028.1 MGP_AJ_G0000020.1 mouse_genomes_project 12 111483665 111483675 - MGP_AJ_P0000028 Ighd5-2 IG_D_gene IG_D_gene MGP_AJ_T0009796.1 MGP_AJ_G0007918.1 mouse_genomes_project 12 66267207 66267277 + miRNA miRNA MGP_AJ_T0100652.1 MGP_AJ_G0038618.1 mouse_genomes_project 12 33522487 33522597 - Gm25438 snoRNA snoRNA MGP_AJ_T0035018.1 MGP_AJ_G0019792.1 mouse_genomes_project 12 70281023 70431849 + MGP_AJ_P0035018 Mnat1 protein_coding nonsense_mediated_decay MGP_AJ_T0035019.1 MGP_AJ_G0019792.1 mouse_genomes_project 12 70281023 70432985 + MGP_AJ_P0035019 Mnat1 protein_coding protein_coding MGP_AJ_T0035020.1 MGP_AJ_G0019792.1 mouse_genomes_project 12 70281023 70392732 + MGP_AJ_P0035020 Mnat1 protein_coding protein_coding MGP_AJ_T0035021.1 MGP_AJ_G0019792.1 mouse_genomes_project 12 70281145 70439007 + MGP_AJ_P0035021 Mnat1 protein_coding unknown_likely_coding MGP_AJ_T0099410.1 MGP_AJ_G0037376.1 mouse_genomes_project 12 56117733 56117908 + Gm22973 snRNA snRNA MGP_AJ_T0000105.1 MGP_AJ_G0000082.1 mouse_genomes_project 12 112727896 112728367 - MGP_AJ_P0000105 Ighv1-7 IG_V_gene IG_V_gene MGP_AJ_T0035756.1 MGP_AJ_G0020023.1 mouse_genomes_project 12 101912979 101920458 - MGP_AJ_P0035756 Serpina3c protein_coding protein_coding MGP_AJ_T0035400.1 MGP_AJ_G0019917.1 mouse_genomes_project 12 82844057 82878117 - MGP_AJ_P0035400 Tmed10 protein_coding unknown_likely_coding MGP_AJ_T0100665.1 MGP_AJ_G0038631.1 mouse_genomes_project 12 56747287 56747418 + Gm22673 snoRNA snoRNA MGP_AJ_T0100684.1 MGP_AJ_G0038650.1 mouse_genomes_project 12 104105945 104106077 + Gm24986 snoRNA snoRNA MGP_AJ_T0009785.1 MGP_AJ_G0007907.1 mouse_genomes_project 12 27566135 27566239 - Gm25865 miRNA miRNA MGP_AJ_T0009894.1 MGP_AJ_G0008016.1 mouse_genomes_project 12 107673538 107673621 + Mir3072 miRNA miRNA MGP_AJ_T0102275.1 MGP_AJ_G0040017.1 mouse_genomes_project 12 101939894 101944888 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0099392.1 MGP_AJ_G0037358.1 mouse_genomes_project 12 10423548 10423655 - Gm22170 snRNA snRNA MGP_AJ_T0035383.1 MGP_AJ_G0019910.1 mouse_genomes_project 12 82641874 82658592 - MGP_AJ_P0035383 Rps6kl1 protein_coding protein_coding MGP_AJ_T0000101.1 MGP_AJ_G0000078.1 mouse_genomes_project 12 112651113 112651553 - MGP_AJ_P0000101 Ighv8-2 IG_V_gene IG_V_gene MGP_AJ_T0034943.1 MGP_AJ_G0019768.1 mouse_genomes_project 12 67582536 67597959 + MGP_AJ_P0034943 Tmx1 protein_coding protein_coding MGP_AJ_T0034944.1 MGP_AJ_G0019768.1 mouse_genomes_project 12 67585465 67596172 + MGP_AJ_P0034944 Tmx1 protein_coding nonsense_mediated_decay MGP_AJ_T0034945.1 MGP_AJ_G0019768.1 mouse_genomes_project 12 67589263 67589999 + Tmx1 protein_coding retained_intron MGP_AJ_T0000855.1 MGP_AJ_G0000790.1 mouse_genomes_project 12 44196824 44197290 + TEC TEC MGP_AJ_T0009844.1 MGP_AJ_G0007966.1 mouse_genomes_project 12 107518122 107518202 - Mir3071 miRNA miRNA MGP_AJ_T0099429.1 MGP_AJ_G0037395.1 mouse_genomes_project 12 92958095 92958202 - Gm26055 snRNA snRNA MGP_AJ_T0035120.1 MGP_AJ_G0019829.1 mouse_genomes_project 12 76122678 76164352 + MGP_AJ_P0035120 Fam71d protein_coding protein_coding MGP_AJ_T0035740.1 MGP_AJ_G0020014.1 mouse_genomes_project 12 101440156 101450793 - MGP_AJ_P0035740 protein_coding protein_coding MGP_AJ_T0034398.1 MGP_AJ_G0019571.1 mouse_genomes_project 12 10128276 10156132 - MGP_AJ_P0034398 Ddx1 protein_coding protein_coding MGP_AJ_T0035996.1 MGP_AJ_G0020109.1 mouse_genomes_project 12 110616786 110644692 + MGP_AJ_P0035996 Inf2 protein_coding protein_coding MGP_AJ_T0098910.1 MGP_AJ_G0036891.1 mouse_genomes_project 12 53685427 53689365 + C87198 sense_intronic sense_intronic MGP_AJ_T0098911.1 MGP_AJ_G0036891.1 mouse_genomes_project 12 53685437 53688901 + C87198 sense_intronic sense_intronic MGP_AJ_T0036001.1 MGP_AJ_G0020112.1 mouse_genomes_project 12 110683779 110704145 - MGP_AJ_P0036001 Akt1 protein_coding protein_coding MGP_AJ_T0036002.1 MGP_AJ_G0020112.1 mouse_genomes_project 12 110684625 110701446 - MGP_AJ_P0036002 Akt1 protein_coding protein_coding MGP_AJ_T0036003.1 MGP_AJ_G0020112.1 mouse_genomes_project 12 110685814 110686884 - Akt1 protein_coding retained_intron MGP_AJ_T0036004.1 MGP_AJ_G0020112.1 mouse_genomes_project 12 110687004 110689553 - Akt1 protein_coding retained_intron MGP_AJ_T0036005.1 MGP_AJ_G0020112.1 mouse_genomes_project 12 110687472 110689058 - Akt1 protein_coding retained_intron MGP_AJ_T0036006.1 MGP_AJ_G0020112.1 mouse_genomes_project 12 110688340 110704753 - MGP_AJ_P0036006 Akt1 protein_coding protein_coding MGP_AJ_T0036007.1 MGP_AJ_G0020112.1 mouse_genomes_project 12 110689075 110703813 - MGP_AJ_P0036007 Akt1 protein_coding protein_coding MGP_AJ_T0036008.1 MGP_AJ_G0020112.1 mouse_genomes_project 12 110689181 110698015 - Akt1 protein_coding processed_transcript MGP_AJ_T0034961.1 MGP_AJ_G0019773.1 mouse_genomes_project 12 68242618 68254838 + MGP_AJ_P0034961 Tomm20l protein_coding protein_coding MGP_AJ_T0006395.1 MGP_AJ_G0005330.1 mouse_genomes_project 12 12722912 12794088 + Gm5432 lincRNA lincRNA MGP_AJ_T0099405.1 MGP_AJ_G0037371.1 mouse_genomes_project 12 51786011 51786175 + Gm25679 snRNA snRNA MGP_AJ_T0035510.1 MGP_AJ_G0019949.1 mouse_genomes_project 12 85997679 86104860 + MGP_AJ_P0035510 Adck1 protein_coding protein_coding MGP_AJ_T0035511.1 MGP_AJ_G0019949.1 mouse_genomes_project 12 85997926 86104859 + MGP_AJ_P0035511 Adck1 protein_coding protein_coding MGP_AJ_T0034626.1 MGP_AJ_G0019651.1 mouse_genomes_project 12 33069103 33093350 + MGP_AJ_P0034626 Agr3 protein_coding protein_coding MGP_AJ_T0034627.1 MGP_AJ_G0019651.1 mouse_genomes_project 12 33069105 33071855 + MGP_AJ_P0034627 Agr3 protein_coding protein_coding MGP_AJ_T0000870.1 MGP_AJ_G0000805.1 mouse_genomes_project 12 110721875 110724455 - TEC TEC MGP_AJ_T0000103.1 MGP_AJ_G0000080.1 mouse_genomes_project 12 112720798 112721263 - MGP_AJ_P0000103 IG_V_gene IG_V_gene MGP_AJ_T0006440.1 MGP_AJ_G0005364.1 mouse_genomes_project 12 84884334 84887321 + Gm26764 lincRNA lincRNA MGP_AJ_T0035908.1 MGP_AJ_G0020080.1 mouse_genomes_project 12 108885687 108978225 + MGP_AJ_P0035908 Tecpr2 protein_coding protein_coding MGP_AJ_T0035909.1 MGP_AJ_G0020080.1 mouse_genomes_project 12 108885687 108978227 + MGP_AJ_P0035909 Tecpr2 protein_coding protein_coding MGP_AJ_T0098390.1 MGP_AJ_G0036374.1 mouse_genomes_project 12 4755566 4757795 + pseudogene pseudogene MGP_AJ_T0000083.1 MGP_AJ_G0000066.1 mouse_genomes_project 12 112452512 112452947 - MGP_AJ_P0000083 Ighv3-4 IG_V_gene IG_V_gene MGP_AJ_T0035682.1 MGP_AJ_G0019997.1 mouse_genomes_project 12 100424036 100515627 - MGP_AJ_P0035682 Btbd7 protein_coding protein_coding MGP_AJ_T0036064.1 MGP_AJ_G0020132.1 mouse_genomes_project 12 111549084 111551784 + MGP_AJ_P0036064 protein_coding protein_coding MGP_AJ_T0035031.1 MGP_AJ_G0019797.1 mouse_genomes_project 12 70747117 70944729 + MGP_AJ_P0035031 Prkch protein_coding protein_coding MGP_AJ_T0035032.1 MGP_AJ_G0019797.1 mouse_genomes_project 12 70747163 70926530 + MGP_AJ_P0035032 Prkch protein_coding protein_coding MGP_AJ_T0003414.1 MGP_AJ_G0003132.1 mouse_genomes_project 12 89319549 89328578 + Gm16876 antisense antisense MGP_AJ_T0034970.1 MGP_AJ_G0019777.1 mouse_genomes_project 12 68972286 69129866 + MGP_AJ_P0034970 Daam1 protein_coding protein_coding MGP_AJ_T0034971.1 MGP_AJ_G0019777.1 mouse_genomes_project 12 69035471 69129833 + MGP_AJ_P0034971 Daam1 protein_coding unknown_likely_coding MGP_AJ_T0009899.1 MGP_AJ_G0008021.1 mouse_genomes_project 12 110152016 110152092 + Mir203 miRNA miRNA MGP_AJ_T0034852.1 MGP_AJ_G0019735.1 mouse_genomes_project 12 62042021 62065105 - MGP_AJ_P0034852 Klhl28 protein_coding protein_coding MGP_AJ_T0100699.1 MGP_AJ_G0038665.1 mouse_genomes_project 12 107598563 107598645 + Gm23347 snoRNA snoRNA MGP_AJ_T0035074.1 MGP_AJ_G0019811.1 mouse_genomes_project 12 73405452 73447397 - MGP_AJ_P0035074 Tex21 protein_coding protein_coding MGP_AJ_T0099430.1 MGP_AJ_G0037396.1 mouse_genomes_project 12 93197331 93197431 + Gm22246 snRNA snRNA MGP_AJ_T0034888.1 MGP_AJ_G0019750.1 mouse_genomes_project 12 66356557 66358019 + Klhdc1 protein_coding processed_transcript MGP_AJ_T0034889.1 MGP_AJ_G0019750.1 mouse_genomes_project 12 66357210 66401065 + MGP_AJ_P0034889 Klhdc1 protein_coding protein_coding MGP_AJ_T0034890.1 MGP_AJ_G0019750.1 mouse_genomes_project 12 66357292 66358021 + Klhdc1 protein_coding processed_transcript MGP_AJ_T0034891.1 MGP_AJ_G0019750.1 mouse_genomes_project 12 66357296 66399752 + MGP_AJ_P0034891 Klhdc1 protein_coding nonsense_mediated_decay MGP_AJ_T0000030.1 MGP_AJ_G0000022.1 mouse_genomes_project 12 111502224 111502253 - MGP_AJ_P0000030 Ighd5-8 IG_D_gene IG_D_gene MGP_AJ_T0012799.1 MGP_AJ_G0010894.1 mouse_genomes_project 12 5697307 5699684 + processed_pseudogene processed_pseudogene MGP_AJ_T0098553.1 MGP_AJ_G0036537.1 mouse_genomes_project 12 9588691 9588796 - Gm27952 rRNA rRNA MGP_AJ_T0034866.1 MGP_AJ_G0019741.1 mouse_genomes_project 12 63388373 63389399 - MGP_AJ_P0034866 Rpl10l protein_coding protein_coding MGP_AJ_T0035851.1 MGP_AJ_G0020065.1 mouse_genomes_project 12 106797599 106832692 - MGP_AJ_P0035851 Wars protein_coding protein_coding MGP_AJ_T0035852.1 MGP_AJ_G0020065.1 mouse_genomes_project 12 106797599 106833660 - MGP_AJ_P0035852 Wars protein_coding protein_coding MGP_AJ_T0035853.1 MGP_AJ_G0020065.1 mouse_genomes_project 12 106797599 106833623 - MGP_AJ_P0035853 Wars protein_coding nonsense_mediated_decay MGP_AJ_T0035854.1 MGP_AJ_G0020065.1 mouse_genomes_project 12 106797603 106832691 - MGP_AJ_P0035854 Wars protein_coding protein_coding MGP_AJ_T0035855.1 MGP_AJ_G0020065.1 mouse_genomes_project 12 106804737 106814756 - Wars protein_coding retained_intron MGP_AJ_T0035856.1 MGP_AJ_G0020065.1 mouse_genomes_project 12 106814588 106833587 - MGP_AJ_P0035856 Wars protein_coding nonsense_mediated_decay MGP_AJ_T0035857.1 MGP_AJ_G0020065.1 mouse_genomes_project 12 106820248 106827927 - Wars protein_coding retained_intron MGP_AJ_T0099431.1 MGP_AJ_G0037397.1 mouse_genomes_project 12 96232356 96232419 + Gm25486 snRNA snRNA MGP_AJ_T0012844.1 MGP_AJ_G0010939.1 mouse_genomes_project 12 89530274 89530769 - processed_pseudogene processed_pseudogene MGP_AJ_T0098551.1 MGP_AJ_G0036535.1 mouse_genomes_project 12 2735870 2735985 + Gm23752 rRNA rRNA MGP_AJ_T0100697.1 MGP_AJ_G0038663.1 mouse_genomes_project 12 107581845 107581917 + Gm25357 snoRNA snoRNA MGP_AJ_T0035874.1 MGP_AJ_G0020070.1 mouse_genomes_project 12 108206439 108208469 + MGP_AJ_P0035874 protein_coding protein_coding MGP_AJ_T0035875.1 MGP_AJ_G0020070.1 mouse_genomes_project 12 108206631 108208080 + MGP_AJ_P0035875 protein_coding protein_coding MGP_AJ_T0009900.1 MGP_AJ_G0008022.1 mouse_genomes_project 12 110689192 110689267 - Mir6939 miRNA miRNA MGP_AJ_T0034429.1 MGP_AJ_G0019582.1 mouse_genomes_project 12 13910756 13919890 - MGP_AJ_P0034429 2410004P03Rik protein_coding protein_coding MGP_AJ_T0034430.1 MGP_AJ_G0019582.1 mouse_genomes_project 12 13913025 13919717 - MGP_AJ_P0034430 2410004P03Rik protein_coding protein_coding MGP_AJ_T0034431.1 MGP_AJ_G0019582.1 mouse_genomes_project 12 13914574 13919666 - MGP_AJ_P0034431 2410004P03Rik protein_coding protein_coding MGP_AJ_T0011322.1 MGP_AJ_G0009444.1 mouse_genomes_project 12 29489283 29489601 - Gm23875 misc_RNA misc_RNA MGP_AJ_T0006452.1 MGP_AJ_G0005376.1 mouse_genomes_project 12 103192728 103240623 + lincRNA lincRNA MGP_AJ_T0006453.1 MGP_AJ_G0005376.1 mouse_genomes_project 12 103193127 103240621 + lincRNA lincRNA MGP_AJ_T0034886.1 MGP_AJ_G0019748.1 mouse_genomes_project 12 66308551 66311209 + MGP_AJ_P0034886 9330151L19Rik protein_coding protein_coding MGP_AJ_T0034968.1 MGP_AJ_G0019776.1 mouse_genomes_project 12 68439492 68449758 + MGP_AJ_P0034968 Dact1 protein_coding protein_coding MGP_AJ_T0034969.1 MGP_AJ_G0019776.1 mouse_genomes_project 12 68439592 68448546 + MGP_AJ_P0034969 Dact1 protein_coding protein_coding MGP_AJ_T0036084.1 MGP_AJ_G0020140.1 mouse_genomes_project 12 116000553 116246431 + MGP_AJ_P0036084 Rapgef5 protein_coding protein_coding MGP_AJ_T0036085.1 MGP_AJ_G0020140.1 mouse_genomes_project 12 116018044 116249195 + MGP_AJ_P0036085 Rapgef5 protein_coding unknown_likely_coding MGP_AJ_T0035125.1 MGP_AJ_G0019834.1 mouse_genomes_project 12 76388330 76435054 - MGP_AJ_P0035125 Tmem229b protein_coding protein_coding MGP_AJ_T0035126.1 MGP_AJ_G0019834.1 mouse_genomes_project 12 76388330 76411005 - MGP_AJ_P0035126 Tmem229b protein_coding protein_coding MGP_AJ_T0035127.1 MGP_AJ_G0019834.1 mouse_genomes_project 12 76388333 76408290 - MGP_AJ_P0035127 Tmem229b protein_coding protein_coding MGP_AJ_T0035128.1 MGP_AJ_G0019834.1 mouse_genomes_project 12 76388335 76434704 - MGP_AJ_P0035128 Tmem229b protein_coding protein_coding MGP_AJ_T0035129.1 MGP_AJ_G0019834.1 mouse_genomes_project 12 76391497 76434767 - MGP_AJ_P0035129 Tmem229b protein_coding protein_coding MGP_AJ_T0035130.1 MGP_AJ_G0019834.1 mouse_genomes_project 12 76400819 76408305 - Tmem229b protein_coding processed_transcript MGP_AJ_T0035131.1 MGP_AJ_G0019834.1 mouse_genomes_project 12 76405296 76434090 - Tmem229b protein_coding processed_transcript MGP_AJ_T0099428.1 MGP_AJ_G0037394.1 mouse_genomes_project 12 91313783 91313944 + Gm23249 snRNA snRNA MGP_AJ_T0000240.1 MGP_AJ_G0000184.1 mouse_genomes_project 12 112097731 112098161 - IG_V_pseudogene IG_V_pseudogene MGP_AJ_T0035246.1 MGP_AJ_G0019872.1 mouse_genomes_project 12 81081993 81129706 + MGP_AJ_P0035246 Rbm25 protein_coding protein_coding MGP_AJ_T0035247.1 MGP_AJ_G0019872.1 mouse_genomes_project 12 81085069 81100849 + MGP_AJ_P0035247 Rbm25 protein_coding protein_coding MGP_AJ_T0035248.1 MGP_AJ_G0019872.1 mouse_genomes_project 12 81085982 81138449 + MGP_AJ_P0035248 Rbm25 protein_coding protein_coding MGP_AJ_T0035249.1 MGP_AJ_G0019872.1 mouse_genomes_project 12 81085983 81106617 + MGP_AJ_P0035249 Rbm25 protein_coding protein_coding MGP_AJ_T0035250.1 MGP_AJ_G0019872.1 mouse_genomes_project 12 81085987 81100847 + MGP_AJ_P0035250 Rbm25 protein_coding protein_coding MGP_AJ_T0035251.1 MGP_AJ_G0019872.1 mouse_genomes_project 12 81086021 81114752 + MGP_AJ_P0035251 Rbm25 protein_coding protein_coding MGP_AJ_T0035252.1 MGP_AJ_G0019872.1 mouse_genomes_project 12 81086036 81097315 + MGP_AJ_P0035252 Rbm25 protein_coding protein_coding MGP_AJ_T0035253.1 MGP_AJ_G0019872.1 mouse_genomes_project 12 81086056 81119287 + MGP_AJ_P0035253 Rbm25 protein_coding nonsense_mediated_decay MGP_AJ_T0035254.1 MGP_AJ_G0019872.1 mouse_genomes_project 12 81089299 81093952 + Rbm25 protein_coding retained_intron MGP_AJ_T0035255.1 MGP_AJ_G0019872.1 mouse_genomes_project 12 81097170 81106636 + Rbm25 protein_coding retained_intron MGP_AJ_T0035256.1 MGP_AJ_G0019872.1 mouse_genomes_project 12 81097255 81137346 + MGP_AJ_P0035256 Rbm25 protein_coding nonsense_mediated_decay MGP_AJ_T0035257.1 MGP_AJ_G0019872.1 mouse_genomes_project 12 81097315 81123770 + Rbm25 protein_coding retained_intron MGP_AJ_T0035258.1 MGP_AJ_G0019872.1 mouse_genomes_project 12 81100798 81106996 + Rbm25 protein_coding processed_transcript MGP_AJ_T0035259.1 MGP_AJ_G0019872.1 mouse_genomes_project 12 81103401 81107353 + Rbm25 protein_coding retained_intron MGP_AJ_T0035260.1 MGP_AJ_G0019872.1 mouse_genomes_project 12 81113812 81114872 + Rbm25 protein_coding retained_intron MGP_AJ_T0035261.1 MGP_AJ_G0019872.1 mouse_genomes_project 12 81118263 81119287 + Rbm25 protein_coding processed_transcript MGP_AJ_T0035262.1 MGP_AJ_G0019872.1 mouse_genomes_project 12 81129813 81131400 + Rbm25 protein_coding processed_transcript MGP_AJ_T0035263.1 MGP_AJ_G0019872.1 mouse_genomes_project 12 81130141 81133187 + Rbm25 protein_coding retained_intron MGP_AJ_T0036034.1 MGP_AJ_G0020127.1 mouse_genomes_project 12 111116818 111155407 + MGP_AJ_P0036034 Mta1 protein_coding protein_coding MGP_AJ_T0036035.1 MGP_AJ_G0020127.1 mouse_genomes_project 12 111116818 111155406 + MGP_AJ_P0036035 Mta1 protein_coding protein_coding MGP_AJ_T0036036.1 MGP_AJ_G0020127.1 mouse_genomes_project 12 111116818 111155407 + MGP_AJ_P0036036 Mta1 protein_coding protein_coding MGP_AJ_T0036037.1 MGP_AJ_G0020127.1 mouse_genomes_project 12 111116818 111155407 + MGP_AJ_P0036037 Mta1 protein_coding protein_coding MGP_AJ_T0036038.1 MGP_AJ_G0020127.1 mouse_genomes_project 12 111116863 111155374 + MGP_AJ_P0036038 Mta1 protein_coding protein_coding MGP_AJ_T0036039.1 MGP_AJ_G0020127.1 mouse_genomes_project 12 111116941 111154873 + Mta1 protein_coding processed_transcript MGP_AJ_T0036040.1 MGP_AJ_G0020127.1 mouse_genomes_project 12 111149678 111151720 + Mta1 protein_coding processed_transcript MGP_AJ_T0036041.1 MGP_AJ_G0020127.1 mouse_genomes_project 12 111149894 111151678 + Mta1 protein_coding processed_transcript MGP_AJ_T0035927.1 MGP_AJ_G0020088.1 mouse_genomes_project 12 109426494 109440253 + MGP_AJ_P0035927 Exoc3l4 protein_coding protein_coding MGP_AJ_T0036093.1 MGP_AJ_G0020143.1 mouse_genomes_project 12 116720702 116790314 - MGP_AJ_P0036093 Sp4 protein_coding protein_coding MGP_AJ_T0035608.1 MGP_AJ_G0019970.1 mouse_genomes_project 12 97755661 97768715 + MGP_AJ_P0035608 Psmc1 protein_coding protein_coding MGP_AJ_T0035453.1 MGP_AJ_G0019932.1 mouse_genomes_project 12 84490953 84506578 + MGP_AJ_P0035453 Cipc protein_coding protein_coding MGP_AJ_T0035454.1 MGP_AJ_G0019932.1 mouse_genomes_project 12 84490953 84507718 + MGP_AJ_P0035454 Cipc protein_coding nonsense_mediated_decay MGP_AJ_T0035455.1 MGP_AJ_G0019932.1 mouse_genomes_project 12 84491009 84505878 + MGP_AJ_P0035455 Cipc protein_coding nonsense_mediated_decay MGP_AJ_T0035456.1 MGP_AJ_G0019932.1 mouse_genomes_project 12 84491253 84509273 + MGP_AJ_P0035456 Cipc protein_coding protein_coding MGP_AJ_T0035457.1 MGP_AJ_G0019932.1 mouse_genomes_project 12 84491306 84497076 + Cipc protein_coding retained_intron MGP_AJ_T0035458.1 MGP_AJ_G0019932.1 mouse_genomes_project 12 84491328 84504302 + MGP_AJ_P0035458 Cipc protein_coding nonsense_mediated_decay MGP_AJ_T0035459.1 MGP_AJ_G0019932.1 mouse_genomes_project 12 84491364 84504301 + MGP_AJ_P0035459 Cipc protein_coding nonsense_mediated_decay MGP_AJ_T0035460.1 MGP_AJ_G0019932.1 mouse_genomes_project 12 84491376 84504218 + MGP_AJ_P0035460 Cipc protein_coding protein_coding MGP_AJ_T0035461.1 MGP_AJ_G0019932.1 mouse_genomes_project 12 84491400 84505794 + MGP_AJ_P0035461 Cipc protein_coding nonsense_mediated_decay MGP_AJ_T0035462.1 MGP_AJ_G0019932.1 mouse_genomes_project 12 84496567 84506744 + MGP_AJ_P0035462 Cipc protein_coding protein_coding MGP_AJ_T0034613.1 MGP_AJ_G0019643.1 mouse_genomes_project 12 31076487 31077373 + MGP_AJ_P0034613 Ferd3l protein_coding protein_coding MGP_AJ_T0000012.1 MGP_AJ_G0000008.1 mouse_genomes_project 12 111402656 111404314 - MGP_AJ_P0000012 Ighg3 IG_C_gene IG_C_gene MGP_AJ_T0034778.1 MGP_AJ_G0019712.1 mouse_genomes_project 12 52932573 52965925 + MGP_AJ_P0034778 Brms1l protein_coding protein_coding MGP_AJ_T0035085.1 MGP_AJ_G0019815.1 mouse_genomes_project 12 73576825 73603542 + MGP_AJ_P0035085 Zbtb1 protein_coding protein_coding MGP_AJ_T0099390.1 MGP_AJ_G0037356.1 mouse_genomes_project 12 9606202 9606309 + Gm25538 snRNA snRNA MGP_AJ_T0034635.1 MGP_AJ_G0019656.1 mouse_genomes_project 12 33306993 33347888 + MGP_AJ_P0034635 Ankmy2 protein_coding protein_coding MGP_AJ_T0099408.1 MGP_AJ_G0037374.1 mouse_genomes_project 12 52063432 52063538 + Gm24296 snRNA snRNA MGP_AJ_T0009814.1 MGP_AJ_G0007936.1 mouse_genomes_project 12 86954892 86955034 - Gm27313 miRNA miRNA MGP_AJ_T0003389.1 MGP_AJ_G0003111.1 mouse_genomes_project 12 37355663 37357250 - Gm17024 antisense antisense MGP_AJ_T0100654.1 MGP_AJ_G0038620.1 mouse_genomes_project 12 36759638 36759770 + Gm24434 snoRNA snoRNA MGP_AJ_T0035741.1 MGP_AJ_G0020015.1 mouse_genomes_project 12 101440156 101459302 - MGP_AJ_P0035741 protein_coding protein_coding MGP_AJ_T0099417.1 MGP_AJ_G0037383.1 mouse_genomes_project 12 66699334 66699440 - Gm24449 snRNA snRNA MGP_AJ_T0035209.1 MGP_AJ_G0019863.1 mouse_genomes_project 12 79104055 79138188 + MGP_AJ_P0035209 Ttc9 protein_coding protein_coding MGP_AJ_T0035351.1 MGP_AJ_G0019902.1 mouse_genomes_project 12 82271379 82273199 + MGP_AJ_P0035351 Isca2 protein_coding protein_coding MGP_AJ_T0100651.1 MGP_AJ_G0038617.1 mouse_genomes_project 12 32035161 32035293 + Gm24429 snoRNA snoRNA MGP_AJ_T0034275.1 MGP_AJ_G0019526.1 mouse_genomes_project 12 679759 714014 + Dnmt3a protein_coding retained_intron MGP_AJ_T0034276.1 MGP_AJ_G0019526.1 mouse_genomes_project 12 680250 742069 + Dnmt3a protein_coding retained_intron MGP_AJ_T0034277.1 MGP_AJ_G0019526.1 mouse_genomes_project 12 680279 748359 + MGP_AJ_P0034277 Dnmt3a protein_coding protein_coding MGP_AJ_T0034278.1 MGP_AJ_G0019526.1 mouse_genomes_project 12 680782 790171 + MGP_AJ_P0034278 Dnmt3a protein_coding protein_coding MGP_AJ_T0034279.1 MGP_AJ_G0019526.1 mouse_genomes_project 12 680810 772425 + MGP_AJ_P0034279 Dnmt3a protein_coding protein_coding MGP_AJ_T0034280.1 MGP_AJ_G0019526.1 mouse_genomes_project 12 680912 789219 + MGP_AJ_P0034280 Dnmt3a protein_coding protein_coding MGP_AJ_T0034281.1 MGP_AJ_G0019526.1 mouse_genomes_project 12 724283 783614 + MGP_AJ_P0034281 Dnmt3a protein_coding nonsense_mediated_decay MGP_AJ_T0034282.1 MGP_AJ_G0019526.1 mouse_genomes_project 12 735669 740811 + MGP_AJ_P0034282 Dnmt3a protein_coding protein_coding MGP_AJ_T0034283.1 MGP_AJ_G0019526.1 mouse_genomes_project 12 740839 751040 + MGP_AJ_P0034283 Dnmt3a protein_coding protein_coding MGP_AJ_T0034284.1 MGP_AJ_G0019526.1 mouse_genomes_project 12 760343 771551 + MGP_AJ_P0034284 Dnmt3a protein_coding protein_coding MGP_AJ_T0034285.1 MGP_AJ_G0019526.1 mouse_genomes_project 12 767157 783569 + MGP_AJ_P0034285 Dnmt3a protein_coding protein_coding MGP_AJ_T0034286.1 MGP_AJ_G0019526.1 mouse_genomes_project 12 767173 790171 + MGP_AJ_P0034286 Dnmt3a protein_coding protein_coding MGP_AJ_T0034287.1 MGP_AJ_G0019526.1 mouse_genomes_project 12 770253 771106 + MGP_AJ_P0034287 Dnmt3a protein_coding protein_coding MGP_AJ_T0034288.1 MGP_AJ_G0019526.1 mouse_genomes_project 12 770298 772406 + MGP_AJ_P0034288 Dnmt3a protein_coding protein_coding MGP_AJ_T0034289.1 MGP_AJ_G0019526.1 mouse_genomes_project 12 771022 772795 + MGP_AJ_P0034289 Dnmt3a protein_coding protein_coding MGP_AJ_T0034290.1 MGP_AJ_G0019526.1 mouse_genomes_project 12 772849 775038 + Dnmt3a protein_coding retained_intron MGP_AJ_T0034291.1 MGP_AJ_G0019526.1 mouse_genomes_project 12 775633 782519 + MGP_AJ_P0034291 Dnmt3a protein_coding nonsense_mediated_decay MGP_AJ_T0034292.1 MGP_AJ_G0019526.1 mouse_genomes_project 12 782542 784274 + MGP_AJ_P0034292 Dnmt3a protein_coding protein_coding MGP_AJ_T0011328.1 MGP_AJ_G0009450.1 mouse_genomes_project 12 66481333 66481633 - Rn7s2 misc_RNA misc_RNA MGP_AJ_T0009843.1 MGP_AJ_G0007965.1 mouse_genomes_project 12 107517760 107517835 + Mir432 miRNA miRNA MGP_AJ_T0035339.1 MGP_AJ_G0019894.1 mouse_genomes_project 12 81901312 81902695 + MGP_AJ_P0035339 Rnf113a2 protein_coding protein_coding MGP_AJ_T0034389.1 MGP_AJ_G0019565.1 mouse_genomes_project 12 8124891 8149572 - MGP_AJ_P0034389 Gen1 protein_coding protein_coding MGP_AJ_T0003410.1 MGP_AJ_G0003128.1 mouse_genomes_project 12 81085564 81087562 - antisense antisense MGP_AJ_T0006394.1 MGP_AJ_G0005329.1 mouse_genomes_project 12 9808364 9812940 + 4930519A11Rik lincRNA lincRNA MGP_AJ_T0034939.1 MGP_AJ_G0019767.1 mouse_genomes_project 12 67373630 67384295 - MGP_AJ_P0034939 Trim9 protein_coding unknown_likely_coding MGP_AJ_T0034940.1 MGP_AJ_G0019767.1 mouse_genomes_project 12 67373636 67477152 - MGP_AJ_P0034940 Trim9 protein_coding protein_coding MGP_AJ_T0034941.1 MGP_AJ_G0019767.1 mouse_genomes_project 12 67373636 67477152 - MGP_AJ_P0034941 Trim9 protein_coding protein_coding MGP_AJ_T0034942.1 MGP_AJ_G0019767.1 mouse_genomes_project 12 67392860 67477152 - MGP_AJ_P0034942 Trim9 protein_coding protein_coding MGP_AJ_T0036079.1 MGP_AJ_G0020139.1 mouse_genomes_project 12 114993920 115265489 + Ptprn2 protein_coding processed_transcript MGP_AJ_T0036080.1 MGP_AJ_G0020139.1 mouse_genomes_project 12 114993929 115610124 + Ptprn2 protein_coding processed_transcript MGP_AJ_T0036081.1 MGP_AJ_G0020139.1 mouse_genomes_project 12 114993929 115762486 + MGP_AJ_P0036081 Ptprn2 protein_coding nonsense_mediated_decay MGP_AJ_T0036082.1 MGP_AJ_G0020139.1 mouse_genomes_project 12 114993970 115331200 + Ptprn2 protein_coding retained_intron MGP_AJ_T0036083.1 MGP_AJ_G0020139.1 mouse_genomes_project 12 114994033 115762430 + MGP_AJ_P0036083 Ptprn2 protein_coding protein_coding MGP_AJ_T0012846.1 MGP_AJ_G0010941.1 mouse_genomes_project 12 93625627 93625981 - processed_pseudogene processed_pseudogene MGP_AJ_T0035886.1 MGP_AJ_G0020073.1 mouse_genomes_project 12 108593093 108607915 - MGP_AJ_P0035886 1700001K19Rik protein_coding protein_coding MGP_AJ_T0102274.1 MGP_AJ_G0040016.1 mouse_genomes_project 12 101845713 101852577 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0006439.1 MGP_AJ_G0005363.1 mouse_genomes_project 12 84433896 84435057 - Gm26698 lincRNA lincRNA MGP_AJ_T0035574.1 MGP_AJ_G0019963.1 mouse_genomes_project 12 96382886 96425149 + MGP_AJ_P0035574 Zc3h14 protein_coding protein_coding MGP_AJ_T0035575.1 MGP_AJ_G0019963.1 mouse_genomes_project 12 96382886 96425149 + MGP_AJ_P0035575 Zc3h14 protein_coding protein_coding MGP_AJ_T0035576.1 MGP_AJ_G0019963.1 mouse_genomes_project 12 96382886 96425149 + MGP_AJ_P0035576 Zc3h14 protein_coding protein_coding MGP_AJ_T0035577.1 MGP_AJ_G0019963.1 mouse_genomes_project 12 96383041 96422616 + MGP_AJ_P0035577 Zc3h14 protein_coding unknown_likely_coding MGP_AJ_T0035578.1 MGP_AJ_G0019963.1 mouse_genomes_project 12 96406939 96425149 + MGP_AJ_P0035578 Zc3h14 protein_coding protein_coding MGP_AJ_T0036042.1 MGP_AJ_G0020128.1 mouse_genomes_project 12 111158457 111163713 + MGP_AJ_P0036042 Crip2 protein_coding protein_coding MGP_AJ_T0036043.1 MGP_AJ_G0020128.1 mouse_genomes_project 12 111158793 111163310 + MGP_AJ_P0036043 Crip2 protein_coding protein_coding MGP_AJ_T0036044.1 MGP_AJ_G0020128.1 mouse_genomes_project 12 111161029 111163337 + MGP_AJ_P0036044 Crip2 protein_coding protein_coding MGP_AJ_T0036045.1 MGP_AJ_G0020128.1 mouse_genomes_project 12 111161554 111163176 + Crip2 protein_coding retained_intron MGP_AJ_T0036046.1 MGP_AJ_G0020128.1 mouse_genomes_project 12 111161683 111162438 + Crip2 protein_coding retained_intron MGP_AJ_T0036047.1 MGP_AJ_G0020128.1 mouse_genomes_project 12 111162292 111162911 + Crip2 protein_coding retained_intron MGP_AJ_T0012865.1 MGP_AJ_G0010960.1 mouse_genomes_project 12 111929681 111930116 + processed_pseudogene processed_pseudogene MGP_AJ_T0035287.1 MGP_AJ_G0019882.1 mouse_genomes_project 12 81517585 81525007 + MGP_AJ_P0035287 Acot3 protein_coding protein_coding MGP_AJ_T0035288.1 MGP_AJ_G0019882.1 mouse_genomes_project 12 81517592 81525007 + MGP_AJ_P0035288 Acot3 protein_coding protein_coding MGP_AJ_T0009824.1 MGP_AJ_G0007946.1 mouse_genomes_project 12 103743039 103743109 - Gm22120 miRNA miRNA MGP_AJ_T0034335.1 MGP_AJ_G0019545.1 mouse_genomes_project 12 1757344 1787452 - MGP_AJ_P0034335 Ubxn2a protein_coding protein_coding MGP_AJ_T0034336.1 MGP_AJ_G0019545.1 mouse_genomes_project 12 1757661 1787011 - MGP_AJ_P0034336 Ubxn2a protein_coding protein_coding MGP_AJ_T0034337.1 MGP_AJ_G0019545.1 mouse_genomes_project 12 1759692 1787186 - MGP_AJ_P0034337 Ubxn2a protein_coding nonsense_mediated_decay MGP_AJ_T0034514.1 MGP_AJ_G0019613.1 mouse_genomes_project 12 25815372 25879432 - MGP_AJ_P0034514 Trappc12 protein_coding protein_coding MGP_AJ_T0034515.1 MGP_AJ_G0019613.1 mouse_genomes_project 12 25815372 25879373 - MGP_AJ_P0034515 Trappc12 protein_coding protein_coding MGP_AJ_T0034516.1 MGP_AJ_G0019613.1 mouse_genomes_project 12 25834486 25879432 - MGP_AJ_P0034516 Trappc12 protein_coding protein_coding MGP_AJ_T0012802.1 MGP_AJ_G0010897.1 mouse_genomes_project 12 12633664 12634663 + processed_pseudogene processed_pseudogene MGP_AJ_T0035743.1 MGP_AJ_G0020017.1 mouse_genomes_project 12 101742071 101752775 - MGP_AJ_P0035743 Serpina11 protein_coding protein_coding MGP_AJ_T0035744.1 MGP_AJ_G0020017.1 mouse_genomes_project 12 101742083 101752745 - MGP_AJ_P0035744 Serpina11 protein_coding protein_coding MGP_AJ_T0035745.1 MGP_AJ_G0020017.1 mouse_genomes_project 12 101747483 101752737 - MGP_AJ_P0035745 Serpina11 protein_coding protein_coding MGP_AJ_T0035746.1 MGP_AJ_G0020017.1 mouse_genomes_project 12 101747569 101752735 - MGP_AJ_P0035746 Serpina11 protein_coding protein_coding MGP_AJ_T0035747.1 MGP_AJ_G0020017.1 mouse_genomes_project 12 101748709 101752759 - Serpina11 protein_coding processed_transcript MGP_AJ_T0035723.1 MGP_AJ_G0020007.1 mouse_genomes_project 12 101083856 101085370 - MGP_AJ_P0035723 Ifi27l2a protein_coding protein_coding MGP_AJ_T0035782.1 MGP_AJ_G0020043.1 mouse_genomes_project 12 103073063 103079051 - MGP_AJ_P0035782 Tcl1 protein_coding protein_coding MGP_AJ_T0035783.1 MGP_AJ_G0020043.1 mouse_genomes_project 12 103073071 103079030 - MGP_AJ_P0035783 Tcl1 protein_coding protein_coding MGP_AJ_T0035784.1 MGP_AJ_G0020043.1 mouse_genomes_project 12 103073621 103079020 - MGP_AJ_P0035784 Tcl1 protein_coding protein_coding MGP_AJ_T0035785.1 MGP_AJ_G0020043.1 mouse_genomes_project 12 103073811 103079107 - MGP_AJ_P0035785 Tcl1 protein_coding protein_coding MGP_AJ_T0035786.1 MGP_AJ_G0020043.1 mouse_genomes_project 12 103073907 103079010 - MGP_AJ_P0035786 Tcl1 protein_coding nonsense_mediated_decay MGP_AJ_T0035787.1 MGP_AJ_G0020043.1 mouse_genomes_project 12 103074603 103078939 - Tcl1 protein_coding processed_transcript MGP_AJ_T0034402.1 MGP_AJ_G0019575.1 mouse_genomes_project 12 12697600 12722695 - MGP_AJ_P0034402 Trib2 protein_coding protein_coding MGP_AJ_T0034403.1 MGP_AJ_G0019575.1 mouse_genomes_project 12 12721812 12722787 - Trib2 protein_coding processed_transcript MGP_AJ_T0003411.1 MGP_AJ_G0003129.1 mouse_genomes_project 12 82417808 82418899 + Gm17139 antisense antisense MGP_AJ_T0034537.1 MGP_AJ_G0019620.1 mouse_genomes_project 12 27996557 28006226 + MGP_AJ_P0034537 Fam150b protein_coding protein_coding MGP_AJ_T0035657.1 MGP_AJ_G0019986.1 mouse_genomes_project 12 99916393 100034550 + MGP_AJ_P0035657 Rin3 protein_coding protein_coding MGP_AJ_T0035658.1 MGP_AJ_G0019986.1 mouse_genomes_project 12 99916512 100007086 + MGP_AJ_P0035658 Rin3 protein_coding protein_coding MGP_AJ_T0035659.1 MGP_AJ_G0019986.1 mouse_genomes_project 12 99916513 99970678 + MGP_AJ_P0035659 Rin3 protein_coding protein_coding MGP_AJ_T0035660.1 MGP_AJ_G0019986.1 mouse_genomes_project 12 99917495 100034550 + MGP_AJ_P0035660 Rin3 protein_coding protein_coding MGP_AJ_T0035661.1 MGP_AJ_G0019986.1 mouse_genomes_project 12 99998762 100005525 + Rin3 protein_coding processed_transcript MGP_AJ_T0035662.1 MGP_AJ_G0019986.1 mouse_genomes_project 12 99998762 100012424 + Rin3 protein_coding processed_transcript MGP_AJ_T0035663.1 MGP_AJ_G0019986.1 mouse_genomes_project 12 99998797 100003250 + Rin3 protein_coding retained_intron MGP_AJ_T0034341.1 MGP_AJ_G0019548.1 mouse_genomes_project 12 4878621 4890452 + MGP_AJ_P0034341 Apob protein_coding protein_coding MGP_AJ_T0034342.1 MGP_AJ_G0019548.1 mouse_genomes_project 12 4878621 4919190 + MGP_AJ_P0034342 Apob protein_coding protein_coding MGP_AJ_T0034343.1 MGP_AJ_G0019548.1 mouse_genomes_project 12 4878752 4918855 + MGP_AJ_P0034343 Apob protein_coding protein_coding MGP_AJ_T0034344.1 MGP_AJ_G0019548.1 mouse_genomes_project 12 4914707 4919190 + MGP_AJ_P0034344 Apob protein_coding protein_coding MGP_AJ_T0035828.1 MGP_AJ_G0020055.1 mouse_genomes_project 12 106109372 106132970 + MGP_AJ_P0035828 Ccnk protein_coding unknown_likely_coding MGP_AJ_T0099402.1 MGP_AJ_G0037368.1 mouse_genomes_project 12 51277253 51277402 + Gm22220 snRNA snRNA MGP_AJ_T0035124.1 MGP_AJ_G0019833.1 mouse_genomes_project 12 76315738 76333804 - MGP_AJ_P0035124 Plek2 protein_coding protein_coding MGP_AJ_T0034650.1 MGP_AJ_G0019664.1 mouse_genomes_project 12 35901163 35989683 + MGP_AJ_P0034650 Etv1 protein_coding protein_coding MGP_AJ_T0034651.1 MGP_AJ_G0019664.1 mouse_genomes_project 12 35901865 35991637 + MGP_AJ_P0034651 Etv1 protein_coding protein_coding MGP_AJ_T0034652.1 MGP_AJ_G0019664.1 mouse_genomes_project 12 35902067 35989213 + MGP_AJ_P0034652 Etv1 protein_coding protein_coding MGP_AJ_T0034653.1 MGP_AJ_G0019664.1 mouse_genomes_project 12 35902102 35903601 + MGP_AJ_P0034653 Etv1 protein_coding protein_coding MGP_AJ_T0034654.1 MGP_AJ_G0019664.1 mouse_genomes_project 12 35902132 35957089 + MGP_AJ_P0034654 Etv1 protein_coding protein_coding MGP_AJ_T0034655.1 MGP_AJ_G0019664.1 mouse_genomes_project 12 35902632 35989210 + MGP_AJ_P0034655 Etv1 protein_coding protein_coding MGP_AJ_T0034656.1 MGP_AJ_G0019664.1 mouse_genomes_project 12 35902897 35990733 + Etv1 protein_coding retained_intron MGP_AJ_T0034657.1 MGP_AJ_G0019664.1 mouse_genomes_project 12 35902913 35957001 + MGP_AJ_P0034657 Etv1 protein_coding protein_coding MGP_AJ_T0034658.1 MGP_AJ_G0019664.1 mouse_genomes_project 12 35905257 35989610 + MGP_AJ_P0034658 Etv1 protein_coding protein_coding MGP_AJ_T0034659.1 MGP_AJ_G0019664.1 mouse_genomes_project 12 35905268 35989395 + MGP_AJ_P0034659 Etv1 protein_coding protein_coding MGP_AJ_T0034660.1 MGP_AJ_G0019664.1 mouse_genomes_project 12 35905296 35991637 + MGP_AJ_P0034660 Etv1 protein_coding protein_coding MGP_AJ_T0034661.1 MGP_AJ_G0019664.1 mouse_genomes_project 12 35946545 35953047 + MGP_AJ_P0034661 Etv1 protein_coding protein_coding MGP_AJ_T0034662.1 MGP_AJ_G0019664.1 mouse_genomes_project 12 35959228 35989150 + Etv1 protein_coding processed_transcript MGP_AJ_T0009825.1 MGP_AJ_G0007947.1 mouse_genomes_project 12 106591006 106591105 + Mir342 miRNA miRNA MGP_AJ_T0035185.1 MGP_AJ_G0019857.1 mouse_genomes_project 12 78811101 79011232 - MGP_AJ_P0035185 Gm20498 protein_coding protein_coding MGP_AJ_T0035189.1 MGP_AJ_G0019857.1 mouse_genomes_project 12 78936650 79011209 - MGP_AJ_P0035189 Gm20498 protein_coding protein_coding MGP_AJ_T0035196.1 MGP_AJ_G0019857.1 mouse_genomes_project 12 78940602 79011204 - MGP_AJ_P0035196 Gm20498 protein_coding nonsense_mediated_decay MGP_AJ_T0035197.1 MGP_AJ_G0019857.1 mouse_genomes_project 12 78940638 79011088 - Gm20498 protein_coding processed_transcript MGP_AJ_T0035198.1 MGP_AJ_G0019857.1 mouse_genomes_project 12 78940660 79011204 - Gm20498 protein_coding processed_transcript MGP_AJ_T0035200.1 MGP_AJ_G0019857.1 mouse_genomes_project 12 78950103 79011204 - Gm20498 protein_coding processed_transcript MGP_AJ_T0099412.1 MGP_AJ_G0037378.1 mouse_genomes_project 12 59034090 59034194 + Gm24750 snRNA snRNA MGP_AJ_T0099387.1 MGP_AJ_G0037353.1 mouse_genomes_project 12 1644969 1645076 + Gm22003 snRNA snRNA MGP_AJ_T0034495.1 MGP_AJ_G0019602.1 mouse_genomes_project 12 22168237 22170531 - MGP_AJ_P0034495 Id2 protein_coding protein_coding MGP_AJ_T0000035.1 MGP_AJ_G0000027.1 mouse_genomes_project 12 111497624 111497633 - IG_D_pseudogene IG_D_pseudogene MGP_AJ_T0035732.1 MGP_AJ_G0020010.1 mouse_genomes_project 12 101294704 101305287 - MGP_AJ_P0035732 Serpina6 protein_coding protein_coding MGP_AJ_T0035733.1 MGP_AJ_G0020010.1 mouse_genomes_project 12 101302448 101305177 - MGP_AJ_P0035733 Serpina6 protein_coding protein_coding MGP_AJ_T0034742.1 MGP_AJ_G0019698.1 mouse_genomes_project 12 51691397 51702596 - MGP_AJ_P0034742 Sptssa protein_coding protein_coding MGP_AJ_T0035415.1 MGP_AJ_G0019923.1 mouse_genomes_project 12 83336919 83371844 + MGP_AJ_P0035415 Ttll5 protein_coding protein_coding MGP_AJ_T0035416.1 MGP_AJ_G0019923.1 mouse_genomes_project 12 83336933 83408363 + MGP_AJ_P0035416 Ttll5 protein_coding protein_coding MGP_AJ_T0035417.1 MGP_AJ_G0019923.1 mouse_genomes_project 12 83336967 83398070 + MGP_AJ_P0035417 Ttll5 protein_coding protein_coding MGP_AJ_T0035418.1 MGP_AJ_G0019923.1 mouse_genomes_project 12 83336970 83566004 + MGP_AJ_P0035418 Ttll5 protein_coding protein_coding MGP_AJ_T0035419.1 MGP_AJ_G0019923.1 mouse_genomes_project 12 83337228 83528358 + MGP_AJ_P0035419 Ttll5 protein_coding nonsense_mediated_decay MGP_AJ_T0035420.1 MGP_AJ_G0019923.1 mouse_genomes_project 12 83337229 83565452 + MGP_AJ_P0035420 Ttll5 protein_coding protein_coding MGP_AJ_T0035421.1 MGP_AJ_G0019923.1 mouse_genomes_project 12 83337238 83383633 + Ttll5 protein_coding processed_transcript MGP_AJ_T0035422.1 MGP_AJ_G0019923.1 mouse_genomes_project 12 83337238 83566003 + MGP_AJ_P0035422 Ttll5 protein_coding protein_coding MGP_AJ_T0035423.1 MGP_AJ_G0019923.1 mouse_genomes_project 12 83337245 83355740 + MGP_AJ_P0035423 Ttll5 protein_coding protein_coding MGP_AJ_T0035424.1 MGP_AJ_G0019923.1 mouse_genomes_project 12 83337281 83357635 + Ttll5 protein_coding retained_intron MGP_AJ_T0035425.1 MGP_AJ_G0019923.1 mouse_genomes_project 12 83337281 83361270 + MGP_AJ_P0035425 Ttll5 protein_coding nonsense_mediated_decay MGP_AJ_T0035426.1 MGP_AJ_G0019923.1 mouse_genomes_project 12 83337335 83566003 + MGP_AJ_P0035426 Ttll5 protein_coding nonsense_mediated_decay MGP_AJ_T0035427.1 MGP_AJ_G0019923.1 mouse_genomes_project 12 83338744 83565453 + MGP_AJ_P0035427 Ttll5 protein_coding nonsense_mediated_decay MGP_AJ_T0035428.1 MGP_AJ_G0019923.1 mouse_genomes_project 12 83392562 83405817 + Ttll5 protein_coding retained_intron MGP_AJ_T0035429.1 MGP_AJ_G0019923.1 mouse_genomes_project 12 83427293 83444673 + MGP_AJ_P0035429 Ttll5 protein_coding protein_coding MGP_AJ_T0035430.1 MGP_AJ_G0019923.1 mouse_genomes_project 12 83432512 83566003 + MGP_AJ_P0035430 Ttll5 protein_coding protein_coding MGP_AJ_T0035431.1 MGP_AJ_G0019923.1 mouse_genomes_project 12 83437741 83525106 + MGP_AJ_P0035431 Ttll5 protein_coding protein_coding MGP_AJ_T0035432.1 MGP_AJ_G0019923.1 mouse_genomes_project 12 83447499 83566003 + MGP_AJ_P0035432 Ttll5 protein_coding protein_coding MGP_AJ_T0035433.1 MGP_AJ_G0019923.1 mouse_genomes_project 12 83454107 83573594 + MGP_AJ_P0035433 Ttll5 protein_coding nonsense_mediated_decay MGP_AJ_T0035156.1 MGP_AJ_G0019846.1 mouse_genomes_project 12 77896247 77935589 + MGP_AJ_P0035156 Exd2 protein_coding protein_coding MGP_AJ_T0034692.1 MGP_AJ_G0019673.1 mouse_genomes_project 12 38588952 38623045 - MGP_AJ_P0034692 Lrrn3 protein_coding protein_coding MGP_AJ_T0034899.1 MGP_AJ_G0019755.1 mouse_genomes_project 12 66688375 66696166 - MGP_AJ_P0034899 Vcpkmt protein_coding unknown_likely_coding MGP_AJ_T0034900.1 MGP_AJ_G0019755.1 mouse_genomes_project 12 66689256 66696208 - MGP_AJ_P0034900 Vcpkmt protein_coding protein_coding MGP_AJ_T0098564.1 MGP_AJ_G0036548.1 mouse_genomes_project 12 80025033 80025136 - n-R5s63 rRNA rRNA MGP_AJ_T0034502.1 MGP_AJ_G0019606.1 mouse_genomes_project 12 24449670 24457995 - MGP_AJ_P0034502 Sox11 protein_coding protein_coding MGP_AJ_T0098824.1 MGP_AJ_G0036808.1 mouse_genomes_project 12 77832834 77832973 - Scarna3b scaRNA scaRNA MGP_AJ_T0006417.1 MGP_AJ_G0005345.1 mouse_genomes_project 12 56032700 56047663 + Gm17529 lincRNA lincRNA MGP_AJ_T0000031.1 MGP_AJ_G0000023.1 mouse_genomes_project 12 111502461 111502471 - MGP_AJ_P0000031 Ighd5-5 IG_D_gene IG_D_gene MGP_AJ_T0098565.1 MGP_AJ_G0036549.1 mouse_genomes_project 12 83226046 83226165 - n-R5s64 rRNA rRNA MGP_AJ_T0000088.1 MGP_AJ_G0000069.1 mouse_genomes_project 12 112494617 112495047 - MGP_AJ_P0000088 Ighv9-4 IG_V_gene IG_V_gene MGP_AJ_T0000089.1 MGP_AJ_G0000069.1 mouse_genomes_project 12 112494617 112494911 - MGP_AJ_P0000089 Ighv9-4 IG_V_gene IG_V_gene MGP_AJ_T0034349.1 MGP_AJ_G0019553.1 mouse_genomes_project 12 5427737 5437886 - MGP_AJ_P0034349 Slc7a15 protein_coding protein_coding MGP_AJ_T0034350.1 MGP_AJ_G0019553.1 mouse_genomes_project 12 5436541 5437907 - Slc7a15 protein_coding processed_transcript MGP_AJ_T0000084.1 MGP_AJ_G0000067.1 mouse_genomes_project 12 112461508 112461945 - MGP_AJ_P0000084 Ighv3-5 IG_V_gene IG_V_gene MGP_AJ_T0000085.1 MGP_AJ_G0000067.1 mouse_genomes_project 12 112461508 112461807 - MGP_AJ_P0000085 Ighv3-5 IG_V_gene IG_V_gene MGP_AJ_T0035392.1 MGP_AJ_G0019913.1 mouse_genomes_project 12 82737137 82772905 - MGP_AJ_P0035392 Mlh3 protein_coding protein_coding MGP_AJ_T0035393.1 MGP_AJ_G0019913.1 mouse_genomes_project 12 82737137 82772878 - MGP_AJ_P0035393 Mlh3 protein_coding protein_coding MGP_AJ_T0006429.1 MGP_AJ_G0005353.1 mouse_genomes_project 12 77553460 77567608 - 2310015A10Rik lincRNA lincRNA MGP_AJ_T0034400.1 MGP_AJ_G0019573.1 mouse_genomes_project 12 11077285 11081726 - MGP_AJ_P0034400 Fam84a protein_coding protein_coding MGP_AJ_T0035505.1 MGP_AJ_G0019946.1 mouse_genomes_project 12 84997018 85003025 + MGP_AJ_P0035505 Slirp protein_coding protein_coding MGP_AJ_T0035506.1 MGP_AJ_G0019946.1 mouse_genomes_project 12 84997036 85003029 + MGP_AJ_P0035506 Slirp protein_coding protein_coding MGP_AJ_T0035507.1 MGP_AJ_G0019946.1 mouse_genomes_project 12 84997042 85003009 + MGP_AJ_P0035507 Slirp protein_coding protein_coding MGP_AJ_T0000100.1 MGP_AJ_G0000077.1 mouse_genomes_project 12 112643808 112644266 - MGP_AJ_P0000100 Ighv6-7 IG_V_gene IG_V_gene MGP_AJ_T0013012.1 MGP_AJ_G0011107.1 mouse_genomes_project 14 45820335 45820776 - processed_pseudogene processed_pseudogene MGP_AJ_T0038886.1 MGP_AJ_G0021110.1 mouse_genomes_project 14 26244316 26255280 - MGP_AJ_P0038886 Zfp488 protein_coding protein_coding MGP_AJ_T0003535.1 MGP_AJ_G0003210.1 mouse_genomes_project 14 25645758 25649959 - Gm15512 antisense antisense MGP_AJ_T0002628.1 MGP_AJ_G0002521.1 mouse_genomes_project 14 46031577 46177072 + MGP_AJ_P0002628 Trav14-1 TR_V_gene TR_V_gene MGP_AJ_T0038685.1 MGP_AJ_G0021065.1 mouse_genomes_project 14 23273291 23375536 + MGP_AJ_P0038685 Pbrm1 protein_coding protein_coding MGP_AJ_T0038686.1 MGP_AJ_G0021065.1 mouse_genomes_project 14 23273291 23372846 + MGP_AJ_P0038686 Pbrm1 protein_coding protein_coding MGP_AJ_T0038687.1 MGP_AJ_G0021065.1 mouse_genomes_project 14 23273302 23281700 + MGP_AJ_P0038687 Pbrm1 protein_coding protein_coding MGP_AJ_T0038688.1 MGP_AJ_G0021065.1 mouse_genomes_project 14 23273310 23336258 + MGP_AJ_P0038688 Pbrm1 protein_coding protein_coding MGP_AJ_T0038689.1 MGP_AJ_G0021065.1 mouse_genomes_project 14 23273323 23372912 + MGP_AJ_P0038689 Pbrm1 protein_coding protein_coding MGP_AJ_T0038690.1 MGP_AJ_G0021065.1 mouse_genomes_project 14 23273330 23281668 + MGP_AJ_P0038690 Pbrm1 protein_coding protein_coding MGP_AJ_T0038691.1 MGP_AJ_G0021065.1 mouse_genomes_project 14 23273352 23286231 + Pbrm1 protein_coding processed_transcript MGP_AJ_T0038692.1 MGP_AJ_G0021065.1 mouse_genomes_project 14 23273361 23373064 + MGP_AJ_P0038692 Pbrm1 protein_coding protein_coding MGP_AJ_T0038693.1 MGP_AJ_G0021065.1 mouse_genomes_project 14 23273411 23375536 + MGP_AJ_P0038693 Pbrm1 protein_coding unknown_likely_coding MGP_AJ_T0038694.1 MGP_AJ_G0021065.1 mouse_genomes_project 14 23279676 23372911 + MGP_AJ_P0038694 Pbrm1 protein_coding nonsense_mediated_decay MGP_AJ_T0038695.1 MGP_AJ_G0021065.1 mouse_genomes_project 14 23279676 23367890 + MGP_AJ_P0038695 Pbrm1 protein_coding protein_coding MGP_AJ_T0038696.1 MGP_AJ_G0021065.1 mouse_genomes_project 14 23279679 23373965 + MGP_AJ_P0038696 Pbrm1 protein_coding protein_coding MGP_AJ_T0038697.1 MGP_AJ_G0021065.1 mouse_genomes_project 14 23279679 23372892 + MGP_AJ_P0038697 Pbrm1 protein_coding protein_coding MGP_AJ_T0038698.1 MGP_AJ_G0021065.1 mouse_genomes_project 14 23279679 23372893 + MGP_AJ_P0038698 Pbrm1 protein_coding protein_coding MGP_AJ_T0038699.1 MGP_AJ_G0021065.1 mouse_genomes_project 14 23279679 23372912 + MGP_AJ_P0038699 Pbrm1 protein_coding nonsense_mediated_decay MGP_AJ_T0038700.1 MGP_AJ_G0021065.1 mouse_genomes_project 14 23279680 23373983 + MGP_AJ_P0038700 Pbrm1 protein_coding protein_coding MGP_AJ_T0038701.1 MGP_AJ_G0021065.1 mouse_genomes_project 14 23281647 23338704 + MGP_AJ_P0038701 Pbrm1 protein_coding protein_coding MGP_AJ_T0038702.1 MGP_AJ_G0021065.1 mouse_genomes_project 14 23337863 23341700 + Pbrm1 protein_coding retained_intron MGP_AJ_T0040099.1 MGP_AJ_G0021524.1 mouse_genomes_project 14 68334885 68381964 - MGP_AJ_P0040099 Lrrc63 protein_coding protein_coding MGP_AJ_T0003587.1 MGP_AJ_G0003249.1 mouse_genomes_project 14 115463570 115467294 - 1700108J01Rik antisense antisense MGP_AJ_T0040277.1 MGP_AJ_G0021590.1 mouse_genomes_project 14 96846187 96899980 + MGP_AJ_P0040277 Slain1 protein_coding protein_coding MGP_AJ_T0040278.1 MGP_AJ_G0021590.1 mouse_genomes_project 14 96846605 96899383 + MGP_AJ_P0040278 Slain1 protein_coding protein_coding MGP_AJ_T0040279.1 MGP_AJ_G0021590.1 mouse_genomes_project 14 96851730 96883507 + MGP_AJ_P0040279 Slain1 protein_coding protein_coding MGP_AJ_T0040280.1 MGP_AJ_G0021590.1 mouse_genomes_project 14 96860445 96899875 + MGP_AJ_P0040280 Slain1 protein_coding protein_coding MGP_AJ_T0003588.1 MGP_AJ_G0003250.1 mouse_genomes_project 14 116197513 116201733 + Gm15735 antisense antisense MGP_AJ_T0099481.1 MGP_AJ_G0037447.1 mouse_genomes_project 14 10751302 10751458 + Gm22350 snRNA snRNA MGP_AJ_T0000907.1 MGP_AJ_G0000841.1 mouse_genomes_project 14 43568564 43570013 - TEC TEC MGP_AJ_T0039454.1 MGP_AJ_G0021296.1 mouse_genomes_project 14 48035609 48044176 + MGP_AJ_P0039454 Ngdn protein_coding protein_coding MGP_AJ_T0013023.1 MGP_AJ_G0011118.1 mouse_genomes_project 14 51278911 51279269 - processed_pseudogene processed_pseudogene MGP_AJ_T0002517.1 MGP_AJ_G0002419.1 mouse_genomes_project 14 47192683 47192746 + MGP_AJ_P0002517 Traj46 TR_J_gene TR_J_gene MGP_AJ_T0039736.1 MGP_AJ_G0021389.1 mouse_genomes_project 14 53387411 53419689 - MGP_AJ_P0039736 Nupl1 protein_coding protein_coding MGP_AJ_T0040216.1 MGP_AJ_G0021571.1 mouse_genomes_project 14 91050994 91435996 - MGP_AJ_P0040216 Dach1 protein_coding protein_coding MGP_AJ_T0040217.1 MGP_AJ_G0021571.1 mouse_genomes_project 14 91050994 91435996 - MGP_AJ_P0040217 Dach1 protein_coding protein_coding MGP_AJ_T0040218.1 MGP_AJ_G0021571.1 mouse_genomes_project 14 91089667 91436197 - Dach1 protein_coding retained_intron MGP_AJ_T0039193.1 MGP_AJ_G0021230.1 mouse_genomes_project 14 43755967 43757730 - MGP_AJ_P0039193 Rnase1 protein_coding protein_coding MGP_AJ_T0099482.1 MGP_AJ_G0037448.1 mouse_genomes_project 14 13157831 13157938 + Gm25328 snRNA snRNA MGP_AJ_T0099519.1 MGP_AJ_G0037485.1 mouse_genomes_project 14 93969246 93969347 - Gm23538 snRNA snRNA MGP_AJ_T0040074.1 MGP_AJ_G0021515.1 mouse_genomes_project 14 66489570 66494970 + MGP_AJ_P0040074 Lpar6 protein_coding protein_coding MGP_AJ_T0038749.1 MGP_AJ_G0021073.1 mouse_genomes_project 14 23505018 23513513 + MGP_AJ_P0038749 Bap1 protein_coding protein_coding MGP_AJ_T0038750.1 MGP_AJ_G0021073.1 mouse_genomes_project 14 23505071 23506583 + Bap1 protein_coding retained_intron MGP_AJ_T0038751.1 MGP_AJ_G0021073.1 mouse_genomes_project 14 23505079 23507770 + Bap1 protein_coding retained_intron MGP_AJ_T0038752.1 MGP_AJ_G0021073.1 mouse_genomes_project 14 23505106 23513499 + Bap1 protein_coding retained_intron MGP_AJ_T0038753.1 MGP_AJ_G0021073.1 mouse_genomes_project 14 23505148 23508706 + MGP_AJ_P0038753 Bap1 protein_coding nonsense_mediated_decay MGP_AJ_T0038754.1 MGP_AJ_G0021073.1 mouse_genomes_project 14 23509837 23512093 + MGP_AJ_P0038754 Bap1 protein_coding nonsense_mediated_decay MGP_AJ_T0038755.1 MGP_AJ_G0021073.1 mouse_genomes_project 14 23510107 23511210 + Bap1 protein_coding retained_intron MGP_AJ_T0038756.1 MGP_AJ_G0021073.1 mouse_genomes_project 14 23511059 23512457 + Bap1 protein_coding retained_intron MGP_AJ_T0002713.1 MGP_AJ_G0002585.1 mouse_genomes_project 14 45761375 45761644 + TR_V_pseudogene TR_V_pseudogene MGP_AJ_T0003551.1 MGP_AJ_G0003224.1 mouse_genomes_project 14 47992467 47992798 + Gm29015 antisense antisense MGP_AJ_T0040079.1 MGP_AJ_G0021517.1 mouse_genomes_project 14 66769131 66777630 + MGP_AJ_P0040079 Med4 protein_coding protein_coding MGP_AJ_T0012998.1 MGP_AJ_G0011093.1 mouse_genomes_project 14 37204608 37205369 - processed_pseudogene processed_pseudogene MGP_AJ_T0040285.1 MGP_AJ_G0021593.1 mouse_genomes_project 14 97672002 97717831 - MGP_AJ_P0040285 Rnf219 protein_coding protein_coding MGP_AJ_T0039491.1 MGP_AJ_G0021305.1 mouse_genomes_project 14 48564273 48569437 - MGP_AJ_P0039491 Nrl protein_coding protein_coding MGP_AJ_T0039492.1 MGP_AJ_G0021305.1 mouse_genomes_project 14 48564823 48570227 - MGP_AJ_P0039492 Nrl protein_coding protein_coding MGP_AJ_T0039493.1 MGP_AJ_G0021305.1 mouse_genomes_project 14 48564823 48570211 - MGP_AJ_P0039493 Nrl protein_coding protein_coding MGP_AJ_T0039442.1 MGP_AJ_G0021292.1 mouse_genomes_project 14 47954142 47956719 + MGP_AJ_P0039442 Cmtm5 protein_coding protein_coding MGP_AJ_T0009978.1 MGP_AJ_G0008100.1 mouse_genomes_project 14 22819266 22819326 + Mir3076 miRNA miRNA MGP_AJ_T0040016.1 MGP_AJ_G0021501.1 mouse_genomes_project 14 63815175 63818872 + MGP_AJ_P0040016 Reep4 protein_coding protein_coding MGP_AJ_T0012989.1 MGP_AJ_G0011084.1 mouse_genomes_project 14 18573851 18574700 - processed_pseudogene processed_pseudogene MGP_AJ_T0038758.1 MGP_AJ_G0021075.1 mouse_genomes_project 14 23590571 23626520 + MGP_AJ_P0038758 Capn7 protein_coding protein_coding MGP_AJ_T0038759.1 MGP_AJ_G0021075.1 mouse_genomes_project 14 23590608 23626522 + MGP_AJ_P0038759 Capn7 protein_coding nonsense_mediated_decay MGP_AJ_T0038760.1 MGP_AJ_G0021075.1 mouse_genomes_project 14 23590640 23626520 + MGP_AJ_P0038760 Capn7 protein_coding nonsense_mediated_decay MGP_AJ_T0003516.1 MGP_AJ_G0003198.1 mouse_genomes_project 14 12850067 12850639 + 7330404K18Rik antisense antisense MGP_AJ_T0039849.1 MGP_AJ_G0021438.1 mouse_genomes_project 14 58573580 58614466 + MGP_AJ_P0039849 Zfp395 protein_coding protein_coding MGP_AJ_T0099489.1 MGP_AJ_G0037455.1 mouse_genomes_project 14 32706394 32706501 + Gm24388 snRNA snRNA MGP_AJ_T0003584.1 MGP_AJ_G0003248.1 mouse_genomes_project 14 115097125 115098676 - 1810041H14Rik antisense antisense MGP_AJ_T0003585.1 MGP_AJ_G0003248.1 mouse_genomes_project 14 115097211 115098910 - 1810041H14Rik antisense antisense MGP_AJ_T0003586.1 MGP_AJ_G0003248.1 mouse_genomes_project 14 115097259 115099815 - 1810041H14Rik antisense antisense MGP_AJ_T0038911.1 MGP_AJ_G0021124.1 mouse_genomes_project 14 26798978 26810160 - MGP_AJ_P0038911 9230112D13Rik protein_coding protein_coding MGP_AJ_T0038850.1 MGP_AJ_G0021098.1 mouse_genomes_project 14 25057047 25089486 + MGP_AJ_P0038850 1810011H11Rik protein_coding protein_coding MGP_AJ_T0039018.1 MGP_AJ_G0021163.1 mouse_genomes_project 14 39315416 39337292 + MGP_AJ_P0039018 Cgrrf1 protein_coding protein_coding MGP_AJ_T0039019.1 MGP_AJ_G0021163.1 mouse_genomes_project 14 39315501 39323668 + Cgrrf1 protein_coding retained_intron MGP_AJ_T0039020.1 MGP_AJ_G0021163.1 mouse_genomes_project 14 39315511 39329743 + Cgrrf1 protein_coding retained_intron MGP_AJ_T0039021.1 MGP_AJ_G0021163.1 mouse_genomes_project 14 39315526 39331204 + Cgrrf1 protein_coding retained_intron MGP_AJ_T0000927.1 MGP_AJ_G0000861.1 mouse_genomes_project 14 97140936 97142652 + TEC TEC MGP_AJ_T0100800.1 MGP_AJ_G0038766.1 mouse_genomes_project 14 93652617 93652749 + Gm26367 snoRNA snoRNA MGP_AJ_T0039790.1 MGP_AJ_G0021414.1 mouse_genomes_project 14 56237590 56239210 + MGP_AJ_P0039790 Defb42 protein_coding protein_coding MGP_AJ_T0039791.1 MGP_AJ_G0021414.1 mouse_genomes_project 14 56237628 56249958 + Defb42 protein_coding processed_transcript MGP_AJ_T0039792.1 MGP_AJ_G0021414.1 mouse_genomes_project 14 56237693 56239158 + MGP_AJ_P0039792 Defb42 protein_coding protein_coding MGP_AJ_T0039793.1 MGP_AJ_G0021414.1 mouse_genomes_project 14 56238828 56239175 + MGP_AJ_P0039793 Defb42 protein_coding protein_coding MGP_AJ_T0039794.1 MGP_AJ_G0021414.1 mouse_genomes_project 14 56246715 56248631 + Defb42 protein_coding processed_transcript MGP_AJ_T0039416.1 MGP_AJ_G0021281.1 mouse_genomes_project 14 47699255 47703827 + MGP_AJ_P0039416 1700123O20Rik protein_coding protein_coding MGP_AJ_T0006684.1 MGP_AJ_G0005520.1 mouse_genomes_project 14 27053295 27059908 + A930038B10Rik lincRNA lincRNA MGP_AJ_T0006685.1 MGP_AJ_G0005520.1 mouse_genomes_project 14 27054120 27064447 + A930038B10Rik lincRNA lincRNA MGP_AJ_T0040160.1 MGP_AJ_G0021546.1 mouse_genomes_project 14 71364756 71372758 - MGP_AJ_P0040160 Fam216b protein_coding protein_coding MGP_AJ_T0040161.1 MGP_AJ_G0021546.1 mouse_genomes_project 14 71365448 71372750 - MGP_AJ_P0040161 Fam216b protein_coding protein_coding MGP_AJ_T0040162.1 MGP_AJ_G0021546.1 mouse_genomes_project 14 71366478 71372732 - MGP_AJ_P0040162 Fam216b protein_coding nonsense_mediated_decay MGP_AJ_T0000928.1 MGP_AJ_G0000862.1 mouse_genomes_project 14 108026288 108026552 - TEC TEC MGP_AJ_T0038972.1 MGP_AJ_G0021148.1 mouse_genomes_project 14 37274527 37281406 - MGP_AJ_P0038972 Ptgdr protein_coding protein_coding MGP_AJ_T0040008.1 MGP_AJ_G0021496.1 mouse_genomes_project 14 63707521 63712245 - MGP_AJ_P0040008 Polr3d protein_coding protein_coding MGP_AJ_T0040009.1 MGP_AJ_G0021496.1 mouse_genomes_project 14 63707521 63712001 - MGP_AJ_P0040009 Polr3d protein_coding protein_coding MGP_AJ_T0039874.1 MGP_AJ_G0021448.1 mouse_genomes_project 14 59210848 59234308 - MGP_AJ_P0039874 Gulo protein_coding protein_coding MGP_AJ_T0012987.1 MGP_AJ_G0011082.1 mouse_genomes_project 14 18415159 18416348 - processed_pseudogene processed_pseudogene MGP_AJ_T0002607.1 MGP_AJ_G0002501.1 mouse_genomes_project 14 45762951 45763473 + MGP_AJ_P0002607 Trav12n-2 TR_V_gene TR_V_gene MGP_AJ_T0039875.1 MGP_AJ_G0021449.1 mouse_genomes_project 14 59252283 59304419 - MGP_AJ_P0039875 Adam2 protein_coding protein_coding MGP_AJ_T0038608.1 MGP_AJ_G0021046.1 mouse_genomes_project 14 22201583 22208350 + MGP_AJ_P0038608 Selk protein_coding protein_coding MGP_AJ_T0038609.1 MGP_AJ_G0021046.1 mouse_genomes_project 14 22201711 22206873 + Selk protein_coding processed_transcript MGP_AJ_T0039697.1 MGP_AJ_G0021378.1 mouse_genomes_project 14 52311680 52320823 - MGP_AJ_P0039697 1700129C05Rik protein_coding protein_coding MGP_AJ_T0039698.1 MGP_AJ_G0021378.1 mouse_genomes_project 14 52311879 52320823 - MGP_AJ_P0039698 1700129C05Rik protein_coding protein_coding MGP_AJ_T0039699.1 MGP_AJ_G0021378.1 mouse_genomes_project 14 52311882 52320823 - MGP_AJ_P0039699 1700129C05Rik protein_coding protein_coding MGP_AJ_T0039700.1 MGP_AJ_G0021378.1 mouse_genomes_project 14 52319255 52320823 - MGP_AJ_P0039700 1700129C05Rik protein_coding protein_coding MGP_AJ_T0040237.1 MGP_AJ_G0021580.1 mouse_genomes_project 14 94860549 94867470 - MGP_AJ_P0040237 Commd6 protein_coding protein_coding MGP_AJ_T0040238.1 MGP_AJ_G0021580.1 mouse_genomes_project 14 94860550 94867255 - MGP_AJ_P0040238 Commd6 protein_coding protein_coding MGP_AJ_T0040239.1 MGP_AJ_G0021580.1 mouse_genomes_project 14 94866839 94867470 - Commd6 protein_coding retained_intron MGP_AJ_T0012972.1 MGP_AJ_G0011067.1 mouse_genomes_project 14 2164538 2165139 + processed_pseudogene processed_pseudogene MGP_AJ_T0013027.1 MGP_AJ_G0011122.1 mouse_genomes_project 14 56637877 56638875 - processed_pseudogene processed_pseudogene MGP_AJ_T0002528.1 MGP_AJ_G0002430.1 mouse_genomes_project 14 47204994 47205052 + MGP_AJ_P0002528 Traj34 TR_J_gene TR_J_gene MGP_AJ_T0002715.1 MGP_AJ_G0002587.1 mouse_genomes_project 14 45952587 45952878 + TR_V_pseudogene TR_V_pseudogene MGP_AJ_T0002512.1 MGP_AJ_G0002416.1 mouse_genomes_project 14 47189026 47189085 + Traj49 TR_J_gene processed_transcript MGP_AJ_T0002513.1 MGP_AJ_G0002416.1 mouse_genomes_project 14 47189026 47189088 + MGP_AJ_P0002513 Traj49 TR_J_gene TR_J_gene MGP_AJ_T0039423.1 MGP_AJ_G0021285.1 mouse_genomes_project 14 47887058 47890235 - Ppp1r3e protein_coding processed_transcript MGP_AJ_T0039424.1 MGP_AJ_G0021285.1 mouse_genomes_project 14 47887070 47894531 - MGP_AJ_P0039424 Ppp1r3e protein_coding protein_coding MGP_AJ_T0039425.1 MGP_AJ_G0021285.1 mouse_genomes_project 14 47892575 47893602 - Ppp1r3e protein_coding TEC MGP_AJ_T0039426.1 MGP_AJ_G0021285.1 mouse_genomes_project 14 47892575 47894519 - MGP_AJ_P0039426 Ppp1r3e protein_coding protein_coding MGP_AJ_T0039615.1 MGP_AJ_G0021336.1 mouse_genomes_project 14 48945690 48948637 - MGP_AJ_P0039615 Sdr39u1 protein_coding protein_coding MGP_AJ_T0039137.1 MGP_AJ_G0021199.1 mouse_genomes_project 14 43008711 43009686 + MGP_AJ_P0039137 protein_coding protein_coding MGP_AJ_T0009991.1 MGP_AJ_G0008113.1 mouse_genomes_project 14 53397013 53397123 - Mir719 miRNA miRNA MGP_AJ_T0002617.1 MGP_AJ_G0002511.1 mouse_genomes_project 14 45904596 45905190 + MGP_AJ_P0002617 TR_V_gene TR_V_gene MGP_AJ_T0100784.1 MGP_AJ_G0038750.1 mouse_genomes_project 14 61424276 61424398 - Gm22319 snoRNA snoRNA MGP_AJ_T0038598.1 MGP_AJ_G0021042.1 mouse_genomes_project 14 19836023 20687629 + MGP_AJ_P0038598 Erc2 protein_coding protein_coding MGP_AJ_T0038599.1 MGP_AJ_G0021042.1 mouse_genomes_project 14 19861542 20526196 + MGP_AJ_P0038599 Erc2 protein_coding unknown_likely_coding MGP_AJ_T0038600.1 MGP_AJ_G0021042.1 mouse_genomes_project 14 19992998 20526196 + MGP_AJ_P0038600 Erc2 protein_coding unknown_likely_coding MGP_AJ_T0012982.1 MGP_AJ_G0011077.1 mouse_genomes_project 14 11435072 11435502 - processed_pseudogene processed_pseudogene MGP_AJ_T0039971.1 MGP_AJ_G0021483.1 mouse_genomes_project 14 62972175 62988704 - MGP_AJ_P0039971 Chmp7 protein_coding protein_coding MGP_AJ_T0002509.1 MGP_AJ_G0002413.1 mouse_genomes_project 14 47182828 47182894 + MGP_AJ_P0002509 Traj53 TR_J_gene TR_J_gene MGP_AJ_T0002622.1 MGP_AJ_G0002516.1 mouse_genomes_project 14 45987197 45992948 + MGP_AJ_P0002622 TR_V_gene TR_V_gene MGP_AJ_T0002624.1 MGP_AJ_G0002516.1 mouse_genomes_project 14 45987369 45992948 + MGP_AJ_P0002624 TR_V_gene TR_V_gene MGP_AJ_T0003542.1 MGP_AJ_G0003217.1 mouse_genomes_project 14 38866236 38867995 + Gm15222 antisense antisense MGP_AJ_T0039347.1 MGP_AJ_G0021264.1 mouse_genomes_project 14 47302900 47303931 - MGP_AJ_P0039347 Olfr49 protein_coding protein_coding MGP_AJ_T0039332.1 MGP_AJ_G0021261.1 mouse_genomes_project 14 45327177 45332899 - MGP_AJ_P0039332 Olfr1507 protein_coding protein_coding MGP_AJ_T0039333.1 MGP_AJ_G0021261.1 mouse_genomes_project 14 45327177 45328289 - MGP_AJ_P0039333 Olfr1507 protein_coding protein_coding MGP_AJ_T0039334.1 MGP_AJ_G0021261.1 mouse_genomes_project 14 45327720 45332501 - MGP_AJ_P0039334 Olfr1507 protein_coding protein_coding MGP_AJ_T0039335.1 MGP_AJ_G0021261.1 mouse_genomes_project 14 45327732 45332895 - MGP_AJ_P0039335 Olfr1507 protein_coding protein_coding MGP_AJ_T0039336.1 MGP_AJ_G0021261.1 mouse_genomes_project 14 45327741 45332529 - MGP_AJ_P0039336 Olfr1507 protein_coding protein_coding MGP_AJ_T0039337.1 MGP_AJ_G0021261.1 mouse_genomes_project 14 45328137 45332893 - MGP_AJ_P0039337 Olfr1507 protein_coding protein_coding MGP_AJ_T0039605.1 MGP_AJ_G0021330.1 mouse_genomes_project 14 48827132 48842255 - MGP_AJ_P0039605 Adcy4 protein_coding unknown_likely_coding MGP_AJ_T0039750.1 MGP_AJ_G0021395.1 mouse_genomes_project 14 54106598 54187686 - MGP_AJ_P0039750 Tnfrsf19 protein_coding protein_coding MGP_AJ_T0039751.1 MGP_AJ_G0021395.1 mouse_genomes_project 14 54106598 54196279 - MGP_AJ_P0039751 Tnfrsf19 protein_coding protein_coding MGP_AJ_T0003560.1 MGP_AJ_G0003231.1 mouse_genomes_project 14 53931972 53940684 - Mipepos antisense antisense MGP_AJ_T0002547.1 MGP_AJ_G0002449.1 mouse_genomes_project 14 47224655 47224715 + MGP_AJ_P0002547 Traj15 TR_J_gene TR_J_gene MGP_AJ_T0039012.1 MGP_AJ_G0021160.1 mouse_genomes_project 14 39240026 39250628 + MGP_AJ_P0039012 Cdkn3 protein_coding protein_coding MGP_AJ_T0039013.1 MGP_AJ_G0021160.1 mouse_genomes_project 14 39240125 39250590 + MGP_AJ_P0039013 Cdkn3 protein_coding unknown_likely_coding MGP_AJ_T0101728.1 MGP_AJ_G0039666.1 mouse_genomes_project 14 52054623 52055106 - transcribed_processed_pseudogene processed_transcript MGP_AJ_T0101729.1 MGP_AJ_G0039666.1 mouse_genomes_project 14 52055027 52056019 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0039192.1 MGP_AJ_G0021229.1 mouse_genomes_project 14 43745032 43747087 + MGP_AJ_P0039192 Rnase6 protein_coding protein_coding MGP_AJ_T0039135.1 MGP_AJ_G0021197.1 mouse_genomes_project 14 42977042 42977981 + MGP_AJ_P0039135 Olfr736 protein_coding protein_coding MGP_AJ_T0039118.1 MGP_AJ_G0021183.1 mouse_genomes_project 14 42436371 42444024 - MGP_AJ_P0039118 Olfr722 protein_coding protein_coding MGP_AJ_T0038391.1 MGP_AJ_G0020988.1 mouse_genomes_project 14 13002190 13073662 - MGP_AJ_P0038391 Usp54 protein_coding protein_coding MGP_AJ_T0038392.1 MGP_AJ_G0020988.1 mouse_genomes_project 14 13002190 13062535 - MGP_AJ_P0038392 Usp54 protein_coding protein_coding MGP_AJ_T0038393.1 MGP_AJ_G0020988.1 mouse_genomes_project 14 13031239 13040120 - MGP_AJ_P0038393 Usp54 protein_coding protein_coding MGP_AJ_T0038394.1 MGP_AJ_G0020988.1 mouse_genomes_project 14 13035228 13060637 - Usp54 protein_coding retained_intron MGP_AJ_T0038395.1 MGP_AJ_G0020988.1 mouse_genomes_project 14 13037284 13073662 - Usp54 protein_coding retained_intron MGP_AJ_T0009999.1 MGP_AJ_G0008121.1 mouse_genomes_project 14 60294550 60294668 + Gm27647 miRNA miRNA MGP_AJ_T0012974.1 MGP_AJ_G0011069.1 mouse_genomes_project 14 3485075 3485901 + processed_pseudogene processed_pseudogene MGP_AJ_T0002608.1 MGP_AJ_G0002502.1 mouse_genomes_project 14 45762951 46577123 + MGP_AJ_P0002608 Trav12d-2 TR_V_gene TR_V_gene MGP_AJ_T0100801.1 MGP_AJ_G0038767.1 mouse_genomes_project 14 93760053 93760177 - Gm24345 snoRNA snoRNA MGP_AJ_T0000914.1 MGP_AJ_G0000848.1 mouse_genomes_project 14 54846248 54850300 - TEC TEC MGP_AJ_T0100793.1 MGP_AJ_G0038759.1 mouse_genomes_project 14 84454320 84454434 - Gm23225 snoRNA snoRNA MGP_AJ_T0100772.1 MGP_AJ_G0038738.1 mouse_genomes_project 14 45093782 45093872 + Gm23758 snoRNA snoRNA MGP_AJ_T0100796.1 MGP_AJ_G0038762.1 mouse_genomes_project 14 89873114 89873244 + Gm25133 snoRNA snoRNA MGP_AJ_T0040214.1 MGP_AJ_G0021569.1 mouse_genomes_project 14 89158919 89160428 + MGP_AJ_P0040214 4921530L21Rik protein_coding protein_coding MGP_AJ_T0040357.1 MGP_AJ_G0021624.1 mouse_genomes_project 14 115099011 115248874 + MGP_AJ_P0040357 Ubac2 protein_coding protein_coding MGP_AJ_T0002539.1 MGP_AJ_G0002441.1 mouse_genomes_project 14 47216303 47216363 + MGP_AJ_P0002539 TR_J_gene TR_J_gene MGP_AJ_T0039829.1 MGP_AJ_G0021430.1 mouse_genomes_project 14 57319652 57329035 + MGP_AJ_P0039829 Prss52 protein_coding protein_coding MGP_AJ_T0003541.1 MGP_AJ_G0003216.1 mouse_genomes_project 14 38072969 38083705 + Gm15601 antisense antisense MGP_AJ_T0002632.1 MGP_AJ_G0002525.1 mouse_genomes_project 14 46184785 46185401 + MGP_AJ_P0002632 TR_V_gene TR_V_gene MGP_AJ_T0017402.1 MGP_AJ_G0015248.1 mouse_genomes_project 14 60566521 60632893 - 4930438E09Rik processed_transcript processed_transcript MGP_AJ_T0002554.1 MGP_AJ_G0002456.1 mouse_genomes_project 14 47234025 47234087 + MGP_AJ_P0002554 Traj5 TR_J_gene TR_J_gene MGP_AJ_T0038301.1 MGP_AJ_G0020962.1 mouse_genomes_project 14 8602295 8613385 - MGP_AJ_P0038301 Oxsm protein_coding protein_coding MGP_AJ_T0038302.1 MGP_AJ_G0020962.1 mouse_genomes_project 14 8603540 8606957 - MGP_AJ_P0038302 Oxsm protein_coding protein_coding MGP_AJ_T0038303.1 MGP_AJ_G0020962.1 mouse_genomes_project 14 8604259 8612753 - MGP_AJ_P0038303 Oxsm protein_coding protein_coding MGP_AJ_T0038304.1 MGP_AJ_G0020962.1 mouse_genomes_project 14 8605798 8612751 - MGP_AJ_P0038304 Oxsm protein_coding protein_coding MGP_AJ_T0012990.1 MGP_AJ_G0011085.1 mouse_genomes_project 14 18766057 18766855 - processed_pseudogene processed_pseudogene MGP_AJ_T0040167.1 MGP_AJ_G0021550.1 mouse_genomes_project 14 72139118 72467601 + MGP_AJ_P0040167 Vwa8 protein_coding protein_coding MGP_AJ_T0040281.1 MGP_AJ_G0021591.1 mouse_genomes_project 14 97007733 97037147 - MGP_AJ_P0040281 Ednrb protein_coding protein_coding MGP_AJ_T0040282.1 MGP_AJ_G0021591.1 mouse_genomes_project 14 97007734 97036670 - MGP_AJ_P0040282 Ednrb protein_coding protein_coding MGP_AJ_T0039418.1 MGP_AJ_G0021283.1 mouse_genomes_project 14 47734143 47792939 - MGP_AJ_P0039418 Slc7a8 protein_coding protein_coding MGP_AJ_T0038619.1 MGP_AJ_G0021050.1 mouse_genomes_project 14 22273171 22592089 - MGP_AJ_P0038619 Cacna1d protein_coding protein_coding MGP_AJ_T0038620.1 MGP_AJ_G0021050.1 mouse_genomes_project 14 22273171 22738573 - MGP_AJ_P0038620 Cacna1d protein_coding protein_coding MGP_AJ_T0038621.1 MGP_AJ_G0021050.1 mouse_genomes_project 14 22299070 22591725 - MGP_AJ_P0038621 Cacna1d protein_coding unknown_likely_coding MGP_AJ_T0038397.1 MGP_AJ_G0020990.1 mouse_genomes_project 14 13115349 13124702 - MGP_AJ_P0038397 Synpo2l protein_coding protein_coding MGP_AJ_T0038398.1 MGP_AJ_G0020990.1 mouse_genomes_project 14 13115351 13120978 - MGP_AJ_P0038398 Synpo2l protein_coding protein_coding MGP_AJ_T0038399.1 MGP_AJ_G0020990.1 mouse_genomes_project 14 13115821 13124750 - MGP_AJ_P0038399 Synpo2l protein_coding protein_coding MGP_AJ_T0038594.1 MGP_AJ_G0021039.1 mouse_genomes_project 14 19445013 19619837 + MGP_AJ_P0038594 Arhgef3 protein_coding protein_coding MGP_AJ_T0038595.1 MGP_AJ_G0021039.1 mouse_genomes_project 14 19553270 19619852 + MGP_AJ_P0038595 Arhgef3 protein_coding unknown_likely_coding MGP_AJ_T0039122.1 MGP_AJ_G0021187.1 mouse_genomes_project 14 42670808 42671642 - MGP_AJ_P0039122 protein_coding protein_coding MGP_AJ_T0038946.1 MGP_AJ_G0021136.1 mouse_genomes_project 14 29338252 29350036 - 2610528A11Rik protein_coding processed_transcript MGP_AJ_T0038947.1 MGP_AJ_G0021136.1 mouse_genomes_project 14 29338254 29346115 - MGP_AJ_P0038947 2610528A11Rik protein_coding protein_coding MGP_AJ_T0040177.1 MGP_AJ_G0021554.1 mouse_genomes_project 14 72667129 72693557 + MGP_AJ_P0040177 Mtrf1 protein_coding protein_coding MGP_AJ_T0039991.1 MGP_AJ_G0021492.1 mouse_genomes_project 14 63444384 63471466 - MGP_AJ_P0039991 Sorbs3 protein_coding protein_coding MGP_AJ_T0039992.1 MGP_AJ_G0021492.1 mouse_genomes_project 14 63445086 63469918 - MGP_AJ_P0039992 Sorbs3 protein_coding unknown_likely_coding MGP_AJ_T0017414.1 MGP_AJ_G0015253.1 mouse_genomes_project 14 93459848 93493343 + 4930517O19Rik processed_transcript processed_transcript MGP_AJ_T0017415.1 MGP_AJ_G0015253.1 mouse_genomes_project 14 93459895 93492853 + 4930517O19Rik processed_transcript processed_transcript MGP_AJ_T0017416.1 MGP_AJ_G0015253.1 mouse_genomes_project 14 93459895 93494278 + 4930517O19Rik processed_transcript processed_transcript MGP_AJ_T0039569.1 MGP_AJ_G0021317.1 mouse_genomes_project 14 48684808 48692095 - MGP_AJ_P0039569 Tm9sf1 protein_coding protein_coding MGP_AJ_T0039570.1 MGP_AJ_G0021317.1 mouse_genomes_project 14 48684808 48693529 - MGP_AJ_P0039570 Tm9sf1 protein_coding protein_coding MGP_AJ_T0039571.1 MGP_AJ_G0021317.1 mouse_genomes_project 14 48684811 48692159 - MGP_AJ_P0039571 Tm9sf1 protein_coding protein_coding MGP_AJ_T0039572.1 MGP_AJ_G0021317.1 mouse_genomes_project 14 48684855 48692198 - MGP_AJ_P0039572 Tm9sf1 protein_coding protein_coding MGP_AJ_T0039573.1 MGP_AJ_G0021317.1 mouse_genomes_project 14 48684859 48692205 - MGP_AJ_P0039573 Tm9sf1 protein_coding nonsense_mediated_decay MGP_AJ_T0039574.1 MGP_AJ_G0021317.1 mouse_genomes_project 14 48684903 48692184 - MGP_AJ_P0039574 Tm9sf1 protein_coding protein_coding MGP_AJ_T0039575.1 MGP_AJ_G0021317.1 mouse_genomes_project 14 48686676 48693246 - MGP_AJ_P0039575 Tm9sf1 protein_coding protein_coding MGP_AJ_T0039576.1 MGP_AJ_G0021317.1 mouse_genomes_project 14 48687144 48689904 - Tm9sf1 protein_coding processed_transcript MGP_AJ_T0039577.1 MGP_AJ_G0021317.1 mouse_genomes_project 14 48688939 48692215 - Tm9sf1 protein_coding retained_intron MGP_AJ_T0039578.1 MGP_AJ_G0021317.1 mouse_genomes_project 14 48689228 48693283 - Tm9sf1 protein_coding processed_transcript MGP_AJ_T0039579.1 MGP_AJ_G0021317.1 mouse_genomes_project 14 48689287 48690443 - Tm9sf1 protein_coding retained_intron MGP_AJ_T0039580.1 MGP_AJ_G0021317.1 mouse_genomes_project 14 48690261 48693494 - MGP_AJ_P0039580 Tm9sf1 protein_coding protein_coding MGP_AJ_T0039581.1 MGP_AJ_G0021317.1 mouse_genomes_project 14 48691427 48692177 - MGP_AJ_P0039581 Tm9sf1 protein_coding protein_coding MGP_AJ_T0039767.1 MGP_AJ_G0021403.1 mouse_genomes_project 14 55445988 55464316 - MGP_AJ_P0039767 Dleu7 protein_coding protein_coding MGP_AJ_T0040131.1 MGP_AJ_G0021538.1 mouse_genomes_project 14 69688915 69782937 + MGP_AJ_P0040131 Tsc22d1 protein_coding protein_coding MGP_AJ_T0040132.1 MGP_AJ_G0021538.1 mouse_genomes_project 14 69689541 69782937 + MGP_AJ_P0040132 Tsc22d1 protein_coding protein_coding MGP_AJ_T0040133.1 MGP_AJ_G0021538.1 mouse_genomes_project 14 69690068 69690598 + Tsc22d1 protein_coding processed_transcript MGP_AJ_T0040134.1 MGP_AJ_G0021538.1 mouse_genomes_project 14 69692305 69715821 + MGP_AJ_P0040134 Tsc22d1 protein_coding nonsense_mediated_decay MGP_AJ_T0040135.1 MGP_AJ_G0021538.1 mouse_genomes_project 14 69692599 69713192 + MGP_AJ_P0040135 Tsc22d1 protein_coding protein_coding MGP_AJ_T0040136.1 MGP_AJ_G0021538.1 mouse_genomes_project 14 69692602 69714533 + MGP_AJ_P0040136 Tsc22d1 protein_coding nonsense_mediated_decay MGP_AJ_T0040137.1 MGP_AJ_G0021538.1 mouse_genomes_project 14 69692779 69714605 + MGP_AJ_P0040137 Tsc22d1 protein_coding nonsense_mediated_decay MGP_AJ_T0040138.1 MGP_AJ_G0021538.1 mouse_genomes_project 14 69711958 69714575 + Tsc22d1 protein_coding processed_transcript MGP_AJ_T0040139.1 MGP_AJ_G0021538.1 mouse_genomes_project 14 69713125 69714575 + Tsc22d1 protein_coding retained_intron MGP_AJ_T0040140.1 MGP_AJ_G0021538.1 mouse_genomes_project 14 69751913 69782104 + MGP_AJ_P0040140 Tsc22d1 protein_coding protein_coding MGP_AJ_T0040141.1 MGP_AJ_G0021538.1 mouse_genomes_project 14 69763272 69782172 + MGP_AJ_P0040141 Tsc22d1 protein_coding protein_coding MGP_AJ_T0040142.1 MGP_AJ_G0021538.1 mouse_genomes_project 14 69763950 69782345 + MGP_AJ_P0040142 Tsc22d1 protein_coding protein_coding MGP_AJ_T0040143.1 MGP_AJ_G0021538.1 mouse_genomes_project 14 69779386 69782938 + MGP_AJ_P0040143 Tsc22d1 protein_coding protein_coding MGP_AJ_T0040144.1 MGP_AJ_G0021538.1 mouse_genomes_project 14 69779650 69782940 + MGP_AJ_P0040144 Tsc22d1 protein_coding protein_coding MGP_AJ_T0040145.1 MGP_AJ_G0021538.1 mouse_genomes_project 14 69779701 69780910 + MGP_AJ_P0040145 Tsc22d1 protein_coding protein_coding MGP_AJ_T0040146.1 MGP_AJ_G0021538.1 mouse_genomes_project 14 69780271 69782176 + MGP_AJ_P0040146 Tsc22d1 protein_coding protein_coding MGP_AJ_T0039944.1 MGP_AJ_G0021472.1 mouse_genomes_project 14 62281204 62293826 + MGP_AJ_P0039944 Stc1 protein_coding protein_coding MGP_AJ_T0039589.1 MGP_AJ_G0021322.1 mouse_genomes_project 14 48728852 48731587 - MGP_AJ_P0039589 Tinf2 protein_coding protein_coding MGP_AJ_T0003539.1 MGP_AJ_G0003214.1 mouse_genomes_project 14 31465811 31497584 + Gm20642 antisense antisense MGP_AJ_T0039623.1 MGP_AJ_G0021344.1 mouse_genomes_project 14 49192919 49195894 - MGP_AJ_P0039623 Gzme protein_coding protein_coding MGP_AJ_T0013049.1 MGP_AJ_G0011144.1 mouse_genomes_project 14 105694164 105694647 + processed_pseudogene processed_pseudogene MGP_AJ_T0039689.1 MGP_AJ_G0021374.1 mouse_genomes_project 14 50996481 50998988 + MGP_AJ_P0039689 Mrpl57 protein_coding protein_coding MGP_AJ_T0039359.1 MGP_AJ_G0021267.1 mouse_genomes_project 14 47437654 47440484 + MGP_AJ_P0039359 Mrpl52 protein_coding protein_coding MGP_AJ_T0039360.1 MGP_AJ_G0021267.1 mouse_genomes_project 14 47437675 47438531 + Mrpl52 protein_coding retained_intron MGP_AJ_T0039361.1 MGP_AJ_G0021267.1 mouse_genomes_project 14 47437676 47438191 + Mrpl52 protein_coding retained_intron MGP_AJ_T0039362.1 MGP_AJ_G0021267.1 mouse_genomes_project 14 47437793 47440502 + Mrpl52 protein_coding retained_intron MGP_AJ_T0039363.1 MGP_AJ_G0021267.1 mouse_genomes_project 14 47437804 47440505 + MGP_AJ_P0039363 Mrpl52 protein_coding protein_coding MGP_AJ_T0039185.1 MGP_AJ_G0021225.1 mouse_genomes_project 14 43704152 43715912 + MGP_AJ_P0039185 protein_coding protein_coding MGP_AJ_T0039187.1 MGP_AJ_G0021225.1 mouse_genomes_project 14 43708976 43715912 + MGP_AJ_P0039187 protein_coding protein_coding MGP_AJ_T0006664.1 MGP_AJ_G0005507.1 mouse_genomes_project 14 15760261 15761614 - A830039N20Rik lincRNA lincRNA MGP_AJ_T0039226.1 MGP_AJ_G0021243.1 mouse_genomes_project 14 44802888 44805638 + MGP_AJ_P0039226 Arhgef40 protein_coding nonsense_mediated_decay MGP_AJ_T0039227.1 MGP_AJ_G0021243.1 mouse_genomes_project 14 44803002 44826753 + MGP_AJ_P0039227 Arhgef40 protein_coding nonsense_mediated_decay MGP_AJ_T0039228.1 MGP_AJ_G0021243.1 mouse_genomes_project 14 44803007 44827349 + MGP_AJ_P0039228 Arhgef40 protein_coding protein_coding MGP_AJ_T0039229.1 MGP_AJ_G0021243.1 mouse_genomes_project 14 44803013 44812149 + Arhgef40 protein_coding retained_intron MGP_AJ_T0039230.1 MGP_AJ_G0021243.1 mouse_genomes_project 14 44803033 44826720 + MGP_AJ_P0039230 Arhgef40 protein_coding protein_coding MGP_AJ_T0039231.1 MGP_AJ_G0021243.1 mouse_genomes_project 14 44803055 44826731 + MGP_AJ_P0039231 Arhgef40 protein_coding nonsense_mediated_decay MGP_AJ_T0039232.1 MGP_AJ_G0021243.1 mouse_genomes_project 14 44803078 44826725 + MGP_AJ_P0039232 Arhgef40 protein_coding protein_coding MGP_AJ_T0039233.1 MGP_AJ_G0021243.1 mouse_genomes_project 14 44803079 44826721 + MGP_AJ_P0039233 Arhgef40 protein_coding protein_coding MGP_AJ_T0039234.1 MGP_AJ_G0021243.1 mouse_genomes_project 14 44803081 44804241 + Arhgef40 protein_coding retained_intron MGP_AJ_T0039235.1 MGP_AJ_G0021243.1 mouse_genomes_project 14 44803084 44810610 + MGP_AJ_P0039235 Arhgef40 protein_coding nonsense_mediated_decay MGP_AJ_T0039236.1 MGP_AJ_G0021243.1 mouse_genomes_project 14 44803100 44826721 + MGP_AJ_P0039236 Arhgef40 protein_coding protein_coding MGP_AJ_T0039237.1 MGP_AJ_G0021243.1 mouse_genomes_project 14 44803135 44813139 + Arhgef40 protein_coding retained_intron MGP_AJ_T0039238.1 MGP_AJ_G0021243.1 mouse_genomes_project 14 44803140 44810262 + MGP_AJ_P0039238 Arhgef40 protein_coding protein_coding MGP_AJ_T0039239.1 MGP_AJ_G0021243.1 mouse_genomes_project 14 44813250 44815487 + Arhgef40 protein_coding retained_intron MGP_AJ_T0039240.1 MGP_AJ_G0021243.1 mouse_genomes_project 14 44815483 44818443 + MGP_AJ_P0039240 Arhgef40 protein_coding nonsense_mediated_decay MGP_AJ_T0039241.1 MGP_AJ_G0021243.1 mouse_genomes_project 14 44816661 44817631 + Arhgef40 protein_coding retained_intron MGP_AJ_T0039242.1 MGP_AJ_G0021243.1 mouse_genomes_project 14 44819033 44826727 + Arhgef40 protein_coding retained_intron MGP_AJ_T0039243.1 MGP_AJ_G0021243.1 mouse_genomes_project 14 44823433 44826721 + MGP_AJ_P0039243 Arhgef40 protein_coding protein_coding MGP_AJ_T0039244.1 MGP_AJ_G0021243.1 mouse_genomes_project 14 44823461 44825060 + Arhgef40 protein_coding retained_intron MGP_AJ_T0039245.1 MGP_AJ_G0021243.1 mouse_genomes_project 14 44823508 44826724 + MGP_AJ_P0039245 Arhgef40 protein_coding protein_coding MGP_AJ_T0039246.1 MGP_AJ_G0021243.1 mouse_genomes_project 14 44824667 44826118 + Arhgef40 protein_coding retained_intron MGP_AJ_T0039247.1 MGP_AJ_G0021243.1 mouse_genomes_project 14 44825178 44826639 + MGP_AJ_P0039247 Arhgef40 protein_coding protein_coding MGP_AJ_T0039248.1 MGP_AJ_G0021243.1 mouse_genomes_project 14 44825584 44826468 + Arhgef40 protein_coding retained_intron MGP_AJ_T0039249.1 MGP_AJ_G0021243.1 mouse_genomes_project 14 44825598 44826410 + Arhgef40 protein_coding retained_intron MGP_AJ_T0039250.1 MGP_AJ_G0021243.1 mouse_genomes_project 14 44825685 44826409 + Arhgef40 protein_coding retained_intron MGP_AJ_T0013033.1 MGP_AJ_G0011128.1 mouse_genomes_project 14 67981800 67995535 + processed_pseudogene processed_pseudogene MGP_AJ_T0002551.1 MGP_AJ_G0002453.1 mouse_genomes_project 14 47229639 47229697 + MGP_AJ_P0002551 Traj9 TR_J_gene TR_J_gene MGP_AJ_T0002612.1 MGP_AJ_G0002506.1 mouse_genomes_project 14 45864450 45864959 + MGP_AJ_P0002612 TR_V_gene TR_V_gene MGP_AJ_T0039974.1 MGP_AJ_G0021486.1 mouse_genomes_project 14 63099657 63322406 + MGP_AJ_P0039974 Pebp4 protein_coding protein_coding MGP_AJ_T0013016.1 MGP_AJ_G0011111.1 mouse_genomes_project 14 47333038 47333364 - processed_pseudogene processed_pseudogene MGP_AJ_T0006698.1 MGP_AJ_G0005530.1 mouse_genomes_project 14 43486219 43493178 + Gm26782 lincRNA lincRNA MGP_AJ_T0006699.1 MGP_AJ_G0005530.1 mouse_genomes_project 14 43486231 43495432 + Gm26782 lincRNA lincRNA MGP_AJ_T0040381.1 MGP_AJ_G0021635.1 mouse_genomes_project 14 116059807 116156253 - MGP_AJ_P0040381 Ggact protein_coding protein_coding MGP_AJ_T0040384.1 MGP_AJ_G0021635.1 mouse_genomes_project 14 116134064 116156295 - MGP_AJ_P0040384 Ggact protein_coding protein_coding MGP_AJ_T0040385.1 MGP_AJ_G0021635.1 mouse_genomes_project 14 116134075 116134910 - MGP_AJ_P0040385 Ggact protein_coding protein_coding MGP_AJ_T0040386.1 MGP_AJ_G0021635.1 mouse_genomes_project 14 116134639 116156890 - MGP_AJ_P0040386 Ggact protein_coding protein_coding MGP_AJ_T0040387.1 MGP_AJ_G0021635.1 mouse_genomes_project 14 116134688 116156218 - MGP_AJ_P0040387 Ggact protein_coding protein_coding MGP_AJ_T0038422.1 MGP_AJ_G0021001.1 mouse_genomes_project 14 13937305 13973372 + MGP_AJ_P0038422 Kat6b protein_coding protein_coding MGP_AJ_T0038423.1 MGP_AJ_G0021001.1 mouse_genomes_project 14 13937330 14077570 + Kat6b protein_coding processed_transcript MGP_AJ_T0038424.1 MGP_AJ_G0021001.1 mouse_genomes_project 14 13955545 14130622 + MGP_AJ_P0038424 Kat6b protein_coding protein_coding MGP_AJ_T0038425.1 MGP_AJ_G0021001.1 mouse_genomes_project 14 13955560 14131029 + MGP_AJ_P0038425 Kat6b protein_coding protein_coding MGP_AJ_T0038426.1 MGP_AJ_G0021001.1 mouse_genomes_project 14 13955629 13974904 + Kat6b protein_coding retained_intron MGP_AJ_T0038427.1 MGP_AJ_G0021001.1 mouse_genomes_project 14 13955631 14130938 + MGP_AJ_P0038427 Kat6b protein_coding unknown_likely_coding MGP_AJ_T0038428.1 MGP_AJ_G0021001.1 mouse_genomes_project 14 13955643 14130684 + MGP_AJ_P0038428 Kat6b protein_coding protein_coding MGP_AJ_T0038429.1 MGP_AJ_G0021001.1 mouse_genomes_project 14 13956628 14076994 + Kat6b protein_coding retained_intron MGP_AJ_T0038430.1 MGP_AJ_G0021001.1 mouse_genomes_project 14 13956660 13976565 + Kat6b protein_coding retained_intron MGP_AJ_T0038431.1 MGP_AJ_G0021001.1 mouse_genomes_project 14 13956664 14076198 + Kat6b protein_coding retained_intron MGP_AJ_T0038432.1 MGP_AJ_G0021001.1 mouse_genomes_project 14 13956667 14131029 + MGP_AJ_P0038432 Kat6b protein_coding protein_coding MGP_AJ_T0038433.1 MGP_AJ_G0021001.1 mouse_genomes_project 14 13973011 14129757 + MGP_AJ_P0038433 Kat6b protein_coding protein_coding MGP_AJ_T0038434.1 MGP_AJ_G0021001.1 mouse_genomes_project 14 14077553 14081126 + Kat6b protein_coding retained_intron MGP_AJ_T0038435.1 MGP_AJ_G0021001.1 mouse_genomes_project 14 14078134 14093216 + Kat6b protein_coding retained_intron MGP_AJ_T0039645.1 MGP_AJ_G0021357.1 mouse_genomes_project 14 49877105 49894190 - MGP_AJ_P0039645 Zmym5 protein_coding unknown_likely_coding MGP_AJ_T0039772.1 MGP_AJ_G0021405.1 mouse_genomes_project 14 55567164 55629574 - MGP_AJ_P0039772 Gucy1b2 protein_coding protein_coding MGP_AJ_T0039773.1 MGP_AJ_G0021405.1 mouse_genomes_project 14 55567279 55629571 - MGP_AJ_P0039773 Gucy1b2 protein_coding protein_coding MGP_AJ_T0039774.1 MGP_AJ_G0021405.1 mouse_genomes_project 14 55593643 55628077 - MGP_AJ_P0039774 Gucy1b2 protein_coding protein_coding MGP_AJ_T0039962.1 MGP_AJ_G0021481.1 mouse_genomes_project 14 62649528 62950944 + MGP_AJ_P0039962 Loxl2 protein_coding protein_coding MGP_AJ_T0039963.1 MGP_AJ_G0021481.1 mouse_genomes_project 14 62649938 62948757 + MGP_AJ_P0039963 Loxl2 protein_coding protein_coding MGP_AJ_T0013050.1 MGP_AJ_G0011145.1 mouse_genomes_project 14 106709337 106709779 - processed_pseudogene processed_pseudogene MGP_AJ_T0010009.1 MGP_AJ_G0008131.1 mouse_genomes_project 14 73018856 73018954 + Mir759 miRNA miRNA MGP_AJ_T0038596.1 MGP_AJ_G0021040.1 mouse_genomes_project 14 19644714 19699412 + MGP_AJ_P0038596 Fam208a protein_coding protein_coding MGP_AJ_T0040261.1 MGP_AJ_G0021587.1 mouse_genomes_project 14 96277362 96300836 - MGP_AJ_P0040261 Fbxl3 protein_coding protein_coding MGP_AJ_T0040262.1 MGP_AJ_G0021587.1 mouse_genomes_project 14 96278157 96300281 - MGP_AJ_P0040262 Fbxl3 protein_coding protein_coding MGP_AJ_T0040263.1 MGP_AJ_G0021587.1 mouse_genomes_project 14 96278807 96300257 - MGP_AJ_P0040263 Fbxl3 protein_coding protein_coding MGP_AJ_T0040264.1 MGP_AJ_G0021587.1 mouse_genomes_project 14 96280228 96291099 - Fbxl3 protein_coding retained_intron MGP_AJ_T0040265.1 MGP_AJ_G0021587.1 mouse_genomes_project 14 96290695 96300848 - MGP_AJ_P0040265 Fbxl3 protein_coding protein_coding MGP_AJ_T0040266.1 MGP_AJ_G0021587.1 mouse_genomes_project 14 96290733 96297030 - MGP_AJ_P0040266 Fbxl3 protein_coding protein_coding MGP_AJ_T0039022.1 MGP_AJ_G0021164.1 mouse_genomes_project 14 39366787 39593133 + MGP_AJ_P0039022 Samd4 protein_coding protein_coding MGP_AJ_T0039023.1 MGP_AJ_G0021164.1 mouse_genomes_project 14 39366898 39595792 + MGP_AJ_P0039023 Samd4 protein_coding protein_coding MGP_AJ_T0039024.1 MGP_AJ_G0021164.1 mouse_genomes_project 14 39367439 39369289 + Samd4 protein_coding processed_transcript MGP_AJ_T0039025.1 MGP_AJ_G0021164.1 mouse_genomes_project 14 39368817 39595786 + MGP_AJ_P0039025 Samd4 protein_coding protein_coding MGP_AJ_T0039026.1 MGP_AJ_G0021164.1 mouse_genomes_project 14 39490612 39492528 + Samd4 protein_coding processed_transcript MGP_AJ_T0039027.1 MGP_AJ_G0021164.1 mouse_genomes_project 14 39490619 39591622 + MGP_AJ_P0039027 Samd4 protein_coding protein_coding MGP_AJ_T0039028.1 MGP_AJ_G0021164.1 mouse_genomes_project 14 39505404 39595799 + MGP_AJ_P0039028 Samd4 protein_coding protein_coding MGP_AJ_T0039029.1 MGP_AJ_G0021164.1 mouse_genomes_project 14 39577154 39579121 + Samd4 protein_coding processed_transcript MGP_AJ_T0039479.1 MGP_AJ_G0021301.1 mouse_genomes_project 14 48245448 48264912 + MGP_AJ_P0039479 Dhrs2 protein_coding protein_coding MGP_AJ_T0039480.1 MGP_AJ_G0021301.1 mouse_genomes_project 14 48258083 48264725 + MGP_AJ_P0039480 Dhrs2 protein_coding protein_coding MGP_AJ_T0040155.1 MGP_AJ_G0021542.1 mouse_genomes_project 14 70440115 71005824 + MGP_AJ_P0040155 Enox1 protein_coding protein_coding MGP_AJ_T0011374.1 MGP_AJ_G0009496.1 mouse_genomes_project 14 54797038 54797152 + Gm27845 misc_RNA misc_RNA MGP_AJ_T0040342.1 MGP_AJ_G0021617.1 mouse_genomes_project 14 113465046 113628731 + MGP_AJ_P0040342 Mbnl2 protein_coding protein_coding MGP_AJ_T0040343.1 MGP_AJ_G0021617.1 mouse_genomes_project 14 113465046 113628731 + MGP_AJ_P0040343 Mbnl2 protein_coding protein_coding MGP_AJ_T0002650.1 MGP_AJ_G0002536.1 mouse_genomes_project 14 46799336 46799943 + MGP_AJ_P0002650 B230359F08Rik TR_V_gene TR_V_gene MGP_AJ_T0100807.1 MGP_AJ_G0038773.1 mouse_genomes_project 14 99949118 99949245 + Gm23437 snoRNA snoRNA MGP_AJ_T0038823.1 MGP_AJ_G0021089.1 mouse_genomes_project 14 24443402 24467351 - MGP_AJ_P0038823 protein_coding unknown_likely_coding MGP_AJ_T0038824.1 MGP_AJ_G0021089.1 mouse_genomes_project 14 24444265 24467318 - MGP_AJ_P0038824 protein_coding nonsense_mediated_decay MGP_AJ_T0038825.1 MGP_AJ_G0021089.1 mouse_genomes_project 14 24444265 24467341 - MGP_AJ_P0038825 protein_coding protein_coding MGP_AJ_T0038826.1 MGP_AJ_G0021089.1 mouse_genomes_project 14 24454980 24467300 - protein_coding retained_intron MGP_AJ_T0038827.1 MGP_AJ_G0021089.1 mouse_genomes_project 14 24457386 24467325 - protein_coding retained_intron MGP_AJ_T0038828.1 MGP_AJ_G0021089.1 mouse_genomes_project 14 24463721 24467351 - protein_coding retained_intron MGP_AJ_T0039844.1 MGP_AJ_G0021435.1 mouse_genomes_project 14 58274319 58321750 - MGP_AJ_P0039844 Extl3 protein_coding protein_coding MGP_AJ_T0002494.1 MGP_AJ_G0002400.1 mouse_genomes_project 14 47148627 47148643 + MGP_AJ_P0002494 Trdd2 TR_D_gene TR_D_gene MGP_AJ_T0012991.1 MGP_AJ_G0011086.1 mouse_genomes_project 14 18769544 18770167 + processed_pseudogene processed_pseudogene MGP_AJ_T0039728.1 MGP_AJ_G0021387.1 mouse_genomes_project 14 52823782 53341519 - MGP_AJ_P0039728 Atp8a2 protein_coding protein_coding MGP_AJ_T0039729.1 MGP_AJ_G0021387.1 mouse_genomes_project 14 53196930 53255733 - MGP_AJ_P0039729 Atp8a2 protein_coding nonsense_mediated_decay MGP_AJ_T0039730.1 MGP_AJ_G0021387.1 mouse_genomes_project 14 53211575 53365441 - MGP_AJ_P0039730 Atp8a2 protein_coding protein_coding MGP_AJ_T0039731.1 MGP_AJ_G0021387.1 mouse_genomes_project 14 53255432 53341671 - MGP_AJ_P0039731 Atp8a2 protein_coding protein_coding MGP_AJ_T0039732.1 MGP_AJ_G0021387.1 mouse_genomes_project 14 53255491 53256206 - MGP_AJ_P0039732 Atp8a2 protein_coding protein_coding MGP_AJ_T0039735.1 MGP_AJ_G0021387.1 mouse_genomes_project 14 53353796 53365405 - Atp8a2 protein_coding processed_transcript MGP_AJ_T0002519.1 MGP_AJ_G0002421.1 mouse_genomes_project 14 47194045 47194106 + MGP_AJ_P0002519 Traj44 TR_J_gene TR_J_gene MGP_AJ_T0038318.1 MGP_AJ_G0020967.1 mouse_genomes_project 14 10492450 10538361 - MGP_AJ_P0038318 Nr1d2 protein_coding protein_coding MGP_AJ_T0038319.1 MGP_AJ_G0020967.1 mouse_genomes_project 14 10502866 10538060 - MGP_AJ_P0038319 Nr1d2 protein_coding unknown_likely_coding MGP_AJ_T0039632.1 MGP_AJ_G0021353.1 mouse_genomes_project 14 49612587 49656679 - MGP_AJ_P0039632 Cenpj protein_coding protein_coding MGP_AJ_T0039633.1 MGP_AJ_G0021353.1 mouse_genomes_project 14 49612609 49660375 - MGP_AJ_P0039633 Cenpj protein_coding unknown_likely_coding MGP_AJ_T0038400.1 MGP_AJ_G0020991.1 mouse_genomes_project 14 13130695 13151159 + MGP_AJ_P0038400 Sec24c protein_coding protein_coding MGP_AJ_T0038314.1 MGP_AJ_G0020965.1 mouse_genomes_project 14 8799393 8945805 - MGP_AJ_P0038314 Rarb protein_coding protein_coding MGP_AJ_T0038569.1 MGP_AJ_G0021030.1 mouse_genomes_project 14 18718329 18718686 + MGP_AJ_P0038569 Gm2178 protein_coding protein_coding MGP_AJ_T0040364.1 MGP_AJ_G0021629.1 mouse_genomes_project 14 115413282 115639156 + MGP_AJ_P0040364 Clybl protein_coding protein_coding MGP_AJ_T0039183.1 MGP_AJ_G0021223.1 mouse_genomes_project 14 43658197 43658742 - MGP_AJ_P0039183 Rnase12 protein_coding protein_coding MGP_AJ_T0039370.1 MGP_AJ_G0021269.1 mouse_genomes_project 14 47474034 47481395 + MGP_AJ_P0039370 Lrp10 protein_coding protein_coding MGP_AJ_T0038931.1 MGP_AJ_G0021131.1 mouse_genomes_project 14 29107124 29200411 - MGP_AJ_P0038931 Ccser2 protein_coding protein_coding MGP_AJ_T0038932.1 MGP_AJ_G0021131.1 mouse_genomes_project 14 29107124 29200321 - MGP_AJ_P0038932 Ccser2 protein_coding protein_coding MGP_AJ_T0038933.1 MGP_AJ_G0021131.1 mouse_genomes_project 14 29111028 29138396 - Ccser2 protein_coding processed_transcript MGP_AJ_T0038934.1 MGP_AJ_G0021131.1 mouse_genomes_project 14 29111029 29167657 - MGP_AJ_P0038934 Ccser2 protein_coding protein_coding MGP_AJ_T0038935.1 MGP_AJ_G0021131.1 mouse_genomes_project 14 29111284 29141201 - MGP_AJ_P0038935 Ccser2 protein_coding protein_coding MGP_AJ_T0038936.1 MGP_AJ_G0021131.1 mouse_genomes_project 14 29111331 29151377 - MGP_AJ_P0038936 Ccser2 protein_coding protein_coding MGP_AJ_T0038937.1 MGP_AJ_G0021131.1 mouse_genomes_project 14 29111547 29151579 - MGP_AJ_P0038937 Ccser2 protein_coding protein_coding MGP_AJ_T0038938.1 MGP_AJ_G0021131.1 mouse_genomes_project 14 29111706 29158894 - MGP_AJ_P0038938 Ccser2 protein_coding protein_coding MGP_AJ_T0038939.1 MGP_AJ_G0021131.1 mouse_genomes_project 14 29111758 29118498 - Ccser2 protein_coding retained_intron MGP_AJ_T0038940.1 MGP_AJ_G0021131.1 mouse_genomes_project 14 29132927 29172030 - Ccser2 protein_coding processed_transcript MGP_AJ_T0039904.1 MGP_AJ_G0021458.1 mouse_genomes_project 14 60087755 60089898 + MGP_AJ_P0039904 Gm5464 protein_coding protein_coding MGP_AJ_T0040204.1 MGP_AJ_G0021567.1 mouse_genomes_project 14 81789711 81796355 - MGP_AJ_P0040204 Pcdh20 protein_coding protein_coding MGP_AJ_T0040205.1 MGP_AJ_G0021567.1 mouse_genomes_project 14 81791828 81796305 - MGP_AJ_P0040205 Pcdh20 protein_coding protein_coding MGP_AJ_T0038315.1 MGP_AJ_G0020966.1 mouse_genomes_project 14 9949034 10332572 + MGP_AJ_P0038315 Thrb protein_coding protein_coding MGP_AJ_T0038316.1 MGP_AJ_G0020966.1 mouse_genomes_project 14 9949034 10334101 + MGP_AJ_P0038316 Thrb protein_coding protein_coding MGP_AJ_T0038317.1 MGP_AJ_G0020966.1 mouse_genomes_project 14 10274447 10334099 + MGP_AJ_P0038317 Thrb protein_coding protein_coding MGP_AJ_T0039321.1 MGP_AJ_G0021256.1 mouse_genomes_project 14 45190008 45190950 - MGP_AJ_P0039321 Olfr1512 protein_coding protein_coding MGP_AJ_T0038597.1 MGP_AJ_G0021041.1 mouse_genomes_project 14 19698271 19724307 - MGP_AJ_P0038597 Ccdc66 protein_coding protein_coding MGP_AJ_T0099495.1 MGP_AJ_G0037461.1 mouse_genomes_project 14 42334036 42334122 + Gm22989 snRNA snRNA MGP_AJ_T0038610.1 MGP_AJ_G0021047.1 mouse_genomes_project 14 22211612 22226497 + MGP_AJ_P0038610 Actr8 protein_coding protein_coding MGP_AJ_T0002626.1 MGP_AJ_G0002519.1 mouse_genomes_project 14 45994910 45995462 + MGP_AJ_P0002626 TR_V_gene TR_V_gene MGP_AJ_T0039324.1 MGP_AJ_G0021259.1 mouse_genomes_project 14 45278198 45286310 + MGP_AJ_P0039324 Olfr1509 protein_coding protein_coding MGP_AJ_T0039325.1 MGP_AJ_G0021259.1 mouse_genomes_project 14 45278199 45285699 + MGP_AJ_P0039325 Olfr1509 protein_coding protein_coding MGP_AJ_T0039326.1 MGP_AJ_G0021259.1 mouse_genomes_project 14 45278234 45285533 + MGP_AJ_P0039326 Olfr1509 protein_coding protein_coding MGP_AJ_T0039327.1 MGP_AJ_G0021259.1 mouse_genomes_project 14 45284255 45285792 + MGP_AJ_P0039327 Olfr1509 protein_coding protein_coding MGP_AJ_T0039328.1 MGP_AJ_G0021259.1 mouse_genomes_project 14 45285300 45286310 + MGP_AJ_P0039328 Olfr1509 protein_coding protein_coding MGP_AJ_T0039647.1 MGP_AJ_G0021359.1 mouse_genomes_project 14 50115104 50121751 + MGP_AJ_P0039647 protein_coding protein_coding MGP_AJ_T0000915.1 MGP_AJ_G0000849.1 mouse_genomes_project 14 54852315 54854462 + TEC TEC MGP_AJ_T0002719.1 MGP_AJ_G0002591.1 mouse_genomes_project 14 46782165 46782427 + TR_V_pseudogene TR_V_pseudogene MGP_AJ_T0100773.1 MGP_AJ_G0038739.1 mouse_genomes_project 14 48184176 48184308 - Gm23596 snoRNA snoRNA MGP_AJ_T0002488.1 MGP_AJ_G0002397.1 mouse_genomes_project 14 47240800 47244477 + MGP_AJ_P0002488 Trac TR_C_gene TR_C_gene MGP_AJ_T0002489.1 MGP_AJ_G0002397.1 mouse_genomes_project 14 47240800 47243392 + MGP_AJ_P0002489 Trac TR_C_gene TR_C_gene MGP_AJ_T0039733.1 MGP_AJ_G0021388.1 mouse_genomes_project 14 53255921 53264765 + MGP_AJ_P0039733 4930563I02Rik protein_coding protein_coding MGP_AJ_T0039734.1 MGP_AJ_G0021388.1 mouse_genomes_project 14 53256367 53264775 + MGP_AJ_P0039734 4930563I02Rik protein_coding protein_coding MGP_AJ_T0039191.1 MGP_AJ_G0021228.1 mouse_genomes_project 14 43729623 43732846 + MGP_AJ_P0039191 Eddm3b protein_coding protein_coding MGP_AJ_T0099480.1 MGP_AJ_G0037446.1 mouse_genomes_project 14 10361155 10361218 + Gm27851 snRNA snRNA MGP_AJ_T0039857.1 MGP_AJ_G0021443.1 mouse_genomes_project 14 59027935 59039906 + MGP_AJ_P0039857 Pbk protein_coding protein_coding MGP_AJ_T0039858.1 MGP_AJ_G0021443.1 mouse_genomes_project 14 59028035 59035197 + Pbk protein_coding processed_transcript MGP_AJ_T0039859.1 MGP_AJ_G0021443.1 mouse_genomes_project 14 59028330 59035963 + MGP_AJ_P0039859 Pbk protein_coding protein_coding MGP_AJ_T0039662.1 MGP_AJ_G0021368.1 mouse_genomes_project 14 50689204 50709069 + MGP_AJ_P0039662 Il17d protein_coding protein_coding MGP_AJ_T0099518.1 MGP_AJ_G0037484.1 mouse_genomes_project 14 93019164 93019350 - Gm22970 snRNA snRNA MGP_AJ_T0039251.1 MGP_AJ_G0021244.1 mouse_genomes_project 14 44827174 44841583 - MGP_AJ_P0039251 Zfp219 protein_coding protein_coding MGP_AJ_T0039252.1 MGP_AJ_G0021244.1 mouse_genomes_project 14 44827183 44840563 - MGP_AJ_P0039252 Zfp219 protein_coding protein_coding MGP_AJ_T0040147.1 MGP_AJ_G0021539.1 mouse_genomes_project 14 69807404 69831336 - MGP_AJ_P0040147 Serp2 protein_coding protein_coding MGP_AJ_T0038912.1 MGP_AJ_G0021125.1 mouse_genomes_project 14 26814057 26876820 - MGP_AJ_P0038912 Ldb3 protein_coding protein_coding MGP_AJ_T0038913.1 MGP_AJ_G0021125.1 mouse_genomes_project 14 26814057 26876746 - MGP_AJ_P0038913 Ldb3 protein_coding protein_coding MGP_AJ_T0038914.1 MGP_AJ_G0021125.1 mouse_genomes_project 14 26814057 26876820 - MGP_AJ_P0038914 Ldb3 protein_coding protein_coding MGP_AJ_T0038915.1 MGP_AJ_G0021125.1 mouse_genomes_project 14 26814057 26876820 - MGP_AJ_P0038915 Ldb3 protein_coding protein_coding MGP_AJ_T0038916.1 MGP_AJ_G0021125.1 mouse_genomes_project 14 26816818 26867458 - MGP_AJ_P0038916 Ldb3 protein_coding unknown_likely_coding MGP_AJ_T0038917.1 MGP_AJ_G0021125.1 mouse_genomes_project 14 26848722 26876820 - MGP_AJ_P0038917 Ldb3 protein_coding protein_coding MGP_AJ_T0040181.1 MGP_AJ_G0021558.1 mouse_genomes_project 14 72753736 72860854 + MGP_AJ_P0040181 Elf1 protein_coding protein_coding MGP_AJ_T0040182.1 MGP_AJ_G0021558.1 mouse_genomes_project 14 72789650 72860853 + MGP_AJ_P0040182 Elf1 protein_coding protein_coding MGP_AJ_T0039631.1 MGP_AJ_G0021352.1 mouse_genomes_project 14 49486223 49610989 + MGP_AJ_P0039631 Rnf17 protein_coding protein_coding MGP_AJ_T0002531.1 MGP_AJ_G0002433.1 mouse_genomes_project 14 47208159 47208216 + MGP_AJ_P0002531 Traj31 TR_J_gene TR_J_gene MGP_AJ_T0002550.1 MGP_AJ_G0002452.1 mouse_genomes_project 14 47227374 47227433 + MGP_AJ_P0002550 Traj11 TR_J_gene TR_J_gene MGP_AJ_T0002523.1 MGP_AJ_G0002425.1 mouse_genomes_project 14 47198213 47198274 + MGP_AJ_P0002523 Traj40 TR_J_gene TR_J_gene MGP_AJ_T0039618.1 MGP_AJ_G0021339.1 mouse_genomes_project 14 49118553 49121065 + MGP_AJ_P0039618 Mcpt2 protein_coding protein_coding MGP_AJ_T0100762.1 MGP_AJ_G0038728.1 mouse_genomes_project 14 23269301 23269380 - Gm24916 snoRNA snoRNA MGP_AJ_T0038592.1 MGP_AJ_G0021037.1 mouse_genomes_project 14 19202594 19204592 + MGP_AJ_P0038592 Hesx1 protein_coding protein_coding MGP_AJ_T0003544.1 MGP_AJ_G0003219.1 mouse_genomes_project 14 46947303 46978760 - Gm43647 antisense antisense MGP_AJ_T0038279.1 MGP_AJ_G0020953.1 mouse_genomes_project 14 6383872 6480050 + MGP_AJ_P0038279 Atxn7 protein_coding protein_coding MGP_AJ_T0100757.1 MGP_AJ_G0038723.1 mouse_genomes_project 14 11122354 11122489 + Gm22499 snoRNA snoRNA MGP_AJ_T0040157.1 MGP_AJ_G0021544.1 mouse_genomes_project 14 71111354 71159690 - MGP_AJ_P0040157 Dnajc15 protein_coding protein_coding MGP_AJ_T0017419.1 MGP_AJ_G0015255.1 mouse_genomes_project 14 98709569 98716389 + 4930449E01Rik processed_transcript lincRNA MGP_AJ_T0017420.1 MGP_AJ_G0015255.1 mouse_genomes_project 14 98711703 98712063 + 4930449E01Rik processed_transcript TEC MGP_AJ_T0017421.1 MGP_AJ_G0015255.1 mouse_genomes_project 14 98714343 98716396 + 4930449E01Rik processed_transcript lincRNA MGP_AJ_T0006688.1 MGP_AJ_G0005523.1 mouse_genomes_project 14 38457576 38483421 + lincRNA lincRNA MGP_AJ_T0039257.1 MGP_AJ_G0021248.1 mouse_genomes_project 14 44929791 44980628 + MGP_AJ_P0039257 Rpgrip1 protein_coding protein_coding MGP_AJ_T0039258.1 MGP_AJ_G0021248.1 mouse_genomes_project 14 44929991 44979765 + MGP_AJ_P0039258 Rpgrip1 protein_coding nonsense_mediated_decay MGP_AJ_T0039259.1 MGP_AJ_G0021248.1 mouse_genomes_project 14 44930010 44940887 + Rpgrip1 protein_coding retained_intron MGP_AJ_T0039260.1 MGP_AJ_G0021248.1 mouse_genomes_project 14 44930017 44978747 + Rpgrip1 protein_coding retained_intron MGP_AJ_T0039261.1 MGP_AJ_G0021248.1 mouse_genomes_project 14 44930027 44980660 + MGP_AJ_P0039261 Rpgrip1 protein_coding protein_coding MGP_AJ_T0039262.1 MGP_AJ_G0021248.1 mouse_genomes_project 14 44931278 44979537 + MGP_AJ_P0039262 Rpgrip1 protein_coding protein_coding MGP_AJ_T0039263.1 MGP_AJ_G0021248.1 mouse_genomes_project 14 44934752 44954706 + Rpgrip1 protein_coding retained_intron MGP_AJ_T0039264.1 MGP_AJ_G0021248.1 mouse_genomes_project 14 44938944 44939526 + Rpgrip1 protein_coding retained_intron MGP_AJ_T0039265.1 MGP_AJ_G0021248.1 mouse_genomes_project 14 44941109 44960433 + MGP_AJ_P0039265 Rpgrip1 protein_coding nonsense_mediated_decay MGP_AJ_T0039266.1 MGP_AJ_G0021248.1 mouse_genomes_project 14 44956376 44968988 + Rpgrip1 protein_coding retained_intron MGP_AJ_T0039267.1 MGP_AJ_G0021248.1 mouse_genomes_project 14 44956421 44980659 + Rpgrip1 protein_coding retained_intron MGP_AJ_T0039268.1 MGP_AJ_G0021248.1 mouse_genomes_project 14 44965201 44968890 + MGP_AJ_P0039268 Rpgrip1 protein_coding protein_coding MGP_AJ_T0039269.1 MGP_AJ_G0021248.1 mouse_genomes_project 14 44965261 44970104 + MGP_AJ_P0039269 Rpgrip1 protein_coding nonsense_mediated_decay MGP_AJ_T0039270.1 MGP_AJ_G0021248.1 mouse_genomes_project 14 44966840 44969080 + Rpgrip1 protein_coding retained_intron MGP_AJ_T0039271.1 MGP_AJ_G0021248.1 mouse_genomes_project 14 44969101 44979615 + MGP_AJ_P0039271 Rpgrip1 protein_coding protein_coding MGP_AJ_T0039272.1 MGP_AJ_G0021248.1 mouse_genomes_project 14 44969184 44970324 + Rpgrip1 protein_coding retained_intron MGP_AJ_T0039273.1 MGP_AJ_G0021248.1 mouse_genomes_project 14 44970050 44979459 + MGP_AJ_P0039273 Rpgrip1 protein_coding protein_coding MGP_AJ_T0039274.1 MGP_AJ_G0021248.1 mouse_genomes_project 14 44971642 44975639 + Rpgrip1 protein_coding retained_intron MGP_AJ_T0039275.1 MGP_AJ_G0021248.1 mouse_genomes_project 14 44977772 44982868 + MGP_AJ_P0039275 Rpgrip1 protein_coding nonsense_mediated_decay MGP_AJ_T0006704.1 MGP_AJ_G0005534.1 mouse_genomes_project 14 45016098 45032623 + Gm26590 lincRNA lincRNA MGP_AJ_T0040347.1 MGP_AJ_G0021620.1 mouse_genomes_project 14 114236295 114437936 + MGP_AJ_P0040347 Farp1 protein_coding protein_coding MGP_AJ_T0040348.1 MGP_AJ_G0021620.1 mouse_genomes_project 14 114236659 114486518 + MGP_AJ_P0040348 Farp1 protein_coding protein_coding MGP_AJ_T0040349.1 MGP_AJ_G0021620.1 mouse_genomes_project 14 114304177 114441462 + Farp1 protein_coding processed_transcript MGP_AJ_T0040350.1 MGP_AJ_G0021620.1 mouse_genomes_project 14 114457731 114470809 + Farp1 protein_coding retained_intron MGP_AJ_T0038505.1 MGP_AJ_G0021014.1 mouse_genomes_project 14 17931789 18010692 + Zmiz1 protein_coding retained_intron MGP_AJ_T0038506.1 MGP_AJ_G0021014.1 mouse_genomes_project 14 17931828 18143268 + MGP_AJ_P0038506 Zmiz1 protein_coding protein_coding MGP_AJ_T0038507.1 MGP_AJ_G0021014.1 mouse_genomes_project 14 17931871 18141244 + MGP_AJ_P0038507 Zmiz1 protein_coding protein_coding MGP_AJ_T0038508.1 MGP_AJ_G0021014.1 mouse_genomes_project 14 17931896 18124858 + Zmiz1 protein_coding retained_intron MGP_AJ_T0038509.1 MGP_AJ_G0021014.1 mouse_genomes_project 14 17932159 18045827 + Zmiz1 protein_coding processed_transcript MGP_AJ_T0038510.1 MGP_AJ_G0021014.1 mouse_genomes_project 14 18081159 18118914 + Zmiz1 protein_coding processed_transcript MGP_AJ_T0038511.1 MGP_AJ_G0021014.1 mouse_genomes_project 14 18081640 18121017 + MGP_AJ_P0038511 Zmiz1 protein_coding protein_coding MGP_AJ_T0038512.1 MGP_AJ_G0021014.1 mouse_genomes_project 14 18133356 18134932 + Zmiz1 protein_coding retained_intron MGP_AJ_T0002598.1 MGP_AJ_G0002494.1 mouse_genomes_project 14 45502159 45502613 + MGP_AJ_P0002598 Trav6-2 TR_V_gene TR_V_gene MGP_AJ_T0002599.1 MGP_AJ_G0002494.1 mouse_genomes_project 14 45502159 45502613 + MGP_AJ_P0002599 Trav6-2 TR_V_gene TR_V_gene MGP_AJ_T0039795.1 MGP_AJ_G0021415.1 mouse_genomes_project 14 56316049 56339474 + MGP_AJ_P0039795 Ctsb protein_coding protein_coding MGP_AJ_T0010023.1 MGP_AJ_G0008145.1 mouse_genomes_project 14 111107985 111108090 - Mir6239 miRNA miRNA MGP_AJ_T0003523.1 MGP_AJ_G0003201.1 mouse_genomes_project 14 14199915 14204710 + Gm15935 antisense antisense MGP_AJ_T0003524.1 MGP_AJ_G0003201.1 mouse_genomes_project 14 14199937 14205005 + Gm15935 antisense antisense MGP_AJ_T0003525.1 MGP_AJ_G0003201.1 mouse_genomes_project 14 14199961 14204456 + Gm15935 antisense antisense MGP_AJ_T0038380.1 MGP_AJ_G0020985.1 mouse_genomes_project 14 12909177 12933675 - MGP_AJ_P0038380 Anxa7 protein_coding protein_coding MGP_AJ_T0038381.1 MGP_AJ_G0020985.1 mouse_genomes_project 14 12909177 12933675 - MGP_AJ_P0038381 Anxa7 protein_coding protein_coding MGP_AJ_T0038767.1 MGP_AJ_G0021079.1 mouse_genomes_project 14 23779547 23834425 - MGP_AJ_P0038767 Colq protein_coding protein_coding MGP_AJ_T0038768.1 MGP_AJ_G0021079.1 mouse_genomes_project 14 23779552 23814916 - MGP_AJ_P0038768 Colq protein_coding unknown_likely_coding MGP_AJ_T0038769.1 MGP_AJ_G0021079.1 mouse_genomes_project 14 23779625 23815189 - MGP_AJ_P0038769 Colq protein_coding protein_coding MGP_AJ_T0038771.1 MGP_AJ_G0021079.1 mouse_genomes_project 14 23809592 23848857 - MGP_AJ_P0038771 Colq protein_coding protein_coding MGP_AJ_T0038772.1 MGP_AJ_G0021079.1 mouse_genomes_project 14 23835424 23848833 - Colq protein_coding processed_transcript MGP_AJ_T0038773.1 MGP_AJ_G0021079.1 mouse_genomes_project 14 23844286 23848822 - Colq protein_coding processed_transcript MGP_AJ_T0010010.1 MGP_AJ_G0008132.1 mouse_genomes_project 14 90340302 90340407 - Gm27441 miRNA miRNA MGP_AJ_T0038456.1 MGP_AJ_G0021005.1 mouse_genomes_project 14 14293228 14302377 + MGP_AJ_P0038456 Vdac2 protein_coding protein_coding MGP_AJ_T0038457.1 MGP_AJ_G0021005.1 mouse_genomes_project 14 14293461 14307833 + MGP_AJ_P0038457 Vdac2 protein_coding protein_coding MGP_AJ_T0038458.1 MGP_AJ_G0021005.1 mouse_genomes_project 14 14293683 14299775 + MGP_AJ_P0038458 Vdac2 protein_coding protein_coding MGP_AJ_T0038459.1 MGP_AJ_G0021005.1 mouse_genomes_project 14 14295575 14299969 + Vdac2 protein_coding processed_transcript MGP_AJ_T0038460.1 MGP_AJ_G0021005.1 mouse_genomes_project 14 14299691 14302485 + Vdac2 protein_coding retained_intron MGP_AJ_T0038461.1 MGP_AJ_G0021005.1 mouse_genomes_project 14 14299788 14300824 + Vdac2 protein_coding retained_intron MGP_AJ_T0038462.1 MGP_AJ_G0021005.1 mouse_genomes_project 14 14304211 14307472 + Vdac2 protein_coding retained_intron MGP_AJ_T0040163.1 MGP_AJ_G0021547.1 mouse_genomes_project 14 71555487 71585791 - MGP_AJ_P0040163 Tnfsf11 protein_coding protein_coding MGP_AJ_T0038793.1 MGP_AJ_G0021084.1 mouse_genomes_project 14 24343371 24348415 - MGP_AJ_P0038793 Dph3 protein_coding protein_coding MGP_AJ_T0038794.1 MGP_AJ_G0021084.1 mouse_genomes_project 14 24343374 24348415 - MGP_AJ_P0038794 Dph3 protein_coding nonsense_mediated_decay MGP_AJ_T0038795.1 MGP_AJ_G0021084.1 mouse_genomes_project 14 24343374 24348415 - MGP_AJ_P0038795 Dph3 protein_coding protein_coding MGP_AJ_T0038796.1 MGP_AJ_G0021084.1 mouse_genomes_project 14 24345563 24348415 - MGP_AJ_P0038796 Dph3 protein_coding protein_coding MGP_AJ_T0038797.1 MGP_AJ_G0021084.1 mouse_genomes_project 14 24345677 24348498 - Dph3 protein_coding processed_transcript MGP_AJ_T0038798.1 MGP_AJ_G0021084.1 mouse_genomes_project 14 24345681 24348092 - Dph3 protein_coding retained_intron MGP_AJ_T0038799.1 MGP_AJ_G0021084.1 mouse_genomes_project 14 24347501 24348415 - MGP_AJ_P0038799 Dph3 protein_coding protein_coding MGP_AJ_T0002546.1 MGP_AJ_G0002448.1 mouse_genomes_project 14 47223367 47223428 + MGP_AJ_P0002546 Traj16 TR_J_gene TR_J_gene MGP_AJ_T0100781.1 MGP_AJ_G0038747.1 mouse_genomes_project 14 57968667 57968803 + Gm26225 snoRNA snoRNA MGP_AJ_T0039786.1 MGP_AJ_G0021413.1 mouse_genomes_project 14 56224598 56228405 - MGP_AJ_P0039786 Defb30 protein_coding protein_coding MGP_AJ_T0039787.1 MGP_AJ_G0021413.1 mouse_genomes_project 14 56224998 56240611 - MGP_AJ_P0039787 Defb30 protein_coding protein_coding MGP_AJ_T0039788.1 MGP_AJ_G0021413.1 mouse_genomes_project 14 56226322 56240616 - MGP_AJ_P0039788 Defb30 protein_coding protein_coding MGP_AJ_T0039789.1 MGP_AJ_G0021413.1 mouse_genomes_project 14 56226408 56228418 - MGP_AJ_P0039789 Defb30 protein_coding protein_coding MGP_AJ_T0002615.1 MGP_AJ_G0002509.1 mouse_genomes_project 14 45876860 45877436 + MGP_AJ_P0002615 TR_V_gene TR_V_gene MGP_AJ_T0006691.1 MGP_AJ_G0005526.1 mouse_genomes_project 14 39047865 39054062 - Rubie lincRNA lincRNA MGP_AJ_T0010024.1 MGP_AJ_G0008146.1 mouse_genomes_project 14 111419312 111419415 + Mir6241 miRNA miRNA MGP_AJ_T0040260.1 MGP_AJ_G0021586.1 mouse_genomes_project 14 96267341 96274705 + MGP_AJ_P0040260 Cln5 protein_coding protein_coding MGP_AJ_T0039142.1 MGP_AJ_G0021204.1 mouse_genomes_project 14 43211330 43212435 + MGP_AJ_P0039142 Olfr744 protein_coding protein_coding MGP_AJ_T0040317.1 MGP_AJ_G0021609.1 mouse_genomes_project 14 111427638 111428367 + MGP_AJ_P0040317 Gm9376 protein_coding protein_coding MGP_AJ_T0038622.1 MGP_AJ_G0021051.1 mouse_genomes_project 14 22726862 22774532 + MGP_AJ_P0038622 Dcp1a protein_coding protein_coding MGP_AJ_T0038402.1 MGP_AJ_G0020993.1 mouse_genomes_project 14 13159335 13160726 + MGP_AJ_P0038402 Chchd1 protein_coding protein_coding MGP_AJ_T0040340.1 MGP_AJ_G0021615.1 mouse_genomes_project 14 112308908 113054552 + MGP_AJ_P0040340 Hs6st3 protein_coding protein_coding MGP_AJ_T0006741.1 MGP_AJ_G0005563.1 mouse_genomes_project 14 112925509 112927850 + 1700006F04Rik lincRNA lincRNA MGP_AJ_T0002647.1 MGP_AJ_G0002534.1 mouse_genomes_project 14 46754686 46754965 + MGP_AJ_P0002647 TR_V_gene TR_V_gene MGP_AJ_T0039482.1 MGP_AJ_G0021303.1 mouse_genomes_project 14 48536408 48553547 + MGP_AJ_P0039482 Lrrc16b protein_coding protein_coding MGP_AJ_T0039483.1 MGP_AJ_G0021303.1 mouse_genomes_project 14 48536559 48553246 + MGP_AJ_P0039483 Lrrc16b protein_coding unknown_likely_coding MGP_AJ_T0039276.1 MGP_AJ_G0021249.1 mouse_genomes_project 14 44979737 45015836 - MGP_AJ_P0039276 Supt16 protein_coding protein_coding MGP_AJ_T0039387.1 MGP_AJ_G0021277.1 mouse_genomes_project 14 47643828 47652095 - MGP_AJ_P0039387 Cdh24 protein_coding unknown_likely_coding MGP_AJ_T0002548.1 MGP_AJ_G0002450.1 mouse_genomes_project 14 47225975 47226032 + MGP_AJ_P0002548 Traj13 TR_J_gene TR_J_gene MGP_AJ_T0040323.1 MGP_AJ_G0021612.1 mouse_genomes_project 14 112043291 112092790 - MGP_AJ_P0040323 Dzip1 protein_coding protein_coding MGP_AJ_T0040324.1 MGP_AJ_G0021612.1 mouse_genomes_project 14 112043879 112094938 - MGP_AJ_P0040324 Dzip1 protein_coding protein_coding MGP_AJ_T0017371.1 MGP_AJ_G0015240.1 mouse_genomes_project 14 45212 72408 + Gm16741 processed_transcript processed_transcript MGP_AJ_T0038546.1 MGP_AJ_G0021028.1 mouse_genomes_project 14 18456159 18463110 + MGP_AJ_P0038546 protein_coding protein_coding MGP_AJ_T0038550.1 MGP_AJ_G0021028.1 mouse_genomes_project 14 18459321 18466539 + MGP_AJ_P0038550 protein_coding protein_coding MGP_AJ_T0040194.1 MGP_AJ_G0021563.1 mouse_genomes_project 14 73277924 73299681 + MGP_AJ_P0040194 Olfm4 protein_coding protein_coding MGP_AJ_T0040195.1 MGP_AJ_G0021563.1 mouse_genomes_project 14 73277947 73299681 + MGP_AJ_P0040195 Olfm4 protein_coding unknown_likely_coding MGP_AJ_T0040189.1 MGP_AJ_G0021561.1 mouse_genomes_project 14 73050458 73054996 - MGP_AJ_P0040189 Pcdh8 protein_coding protein_coding MGP_AJ_T0040190.1 MGP_AJ_G0021561.1 mouse_genomes_project 14 73050463 73054996 - MGP_AJ_P0040190 Pcdh8 protein_coding protein_coding MGP_AJ_T0040191.1 MGP_AJ_G0021561.1 mouse_genomes_project 14 73050467 73054996 - Pcdh8 protein_coding retained_intron MGP_AJ_T0040192.1 MGP_AJ_G0021561.1 mouse_genomes_project 14 73052715 73054888 - Pcdh8 protein_coding processed_transcript MGP_AJ_T0098919.1 MGP_AJ_G0036899.1 mouse_genomes_project 14 49819286 49820584 - C030013D06Rik sense_intronic sense_intronic MGP_AJ_T0038264.1 MGP_AJ_G0020946.1 mouse_genomes_project 14 4605686 4625316 + MGP_AJ_P0038264 3830406C13Rik protein_coding protein_coding MGP_AJ_T0038265.1 MGP_AJ_G0020946.1 mouse_genomes_project 14 4605686 4625316 + MGP_AJ_P0038265 3830406C13Rik protein_coding protein_coding MGP_AJ_T0098917.1 MGP_AJ_G0036897.1 mouse_genomes_project 14 16706412 16711606 - Gm17105 sense_intronic sense_intronic MGP_AJ_T0013048.1 MGP_AJ_G0011143.1 mouse_genomes_project 14 101894916 101895366 - processed_pseudogene processed_pseudogene MGP_AJ_T0039905.1 MGP_AJ_G0021459.1 mouse_genomes_project 14 60127830 60136683 + MGP_AJ_P0039905 Pnma2 protein_coding protein_coding MGP_AJ_T0039906.1 MGP_AJ_G0021459.1 mouse_genomes_project 14 60127868 60135448 + MGP_AJ_P0039906 Pnma2 protein_coding protein_coding MGP_AJ_T0039907.1 MGP_AJ_G0021459.1 mouse_genomes_project 14 60127902 60131355 + Pnma2 protein_coding processed_transcript MGP_AJ_T0039908.1 MGP_AJ_G0021459.1 mouse_genomes_project 14 60130944 60132663 + Pnma2 protein_coding processed_transcript MGP_AJ_T0038537.1 MGP_AJ_G0021025.1 mouse_genomes_project 14 18418252 18432103 + MGP_AJ_P0038537 protein_coding protein_coding MGP_AJ_T0038540.1 MGP_AJ_G0021025.1 mouse_genomes_project 14 18418304 18432094 + MGP_AJ_P0038540 protein_coding protein_coding MGP_AJ_T0040227.1 MGP_AJ_G0021579.1 mouse_genomes_project 14 94666394 94832870 - MGP_AJ_P0040227 Tbc1d4 protein_coding protein_coding MGP_AJ_T0040228.1 MGP_AJ_G0021579.1 mouse_genomes_project 14 94666402 94687237 - Tbc1d4 protein_coding retained_intron MGP_AJ_T0040229.1 MGP_AJ_G0021579.1 mouse_genomes_project 14 94666402 94731077 - MGP_AJ_P0040229 Tbc1d4 protein_coding protein_coding MGP_AJ_T0040230.1 MGP_AJ_G0021579.1 mouse_genomes_project 14 94667757 94832323 - MGP_AJ_P0040230 Tbc1d4 protein_coding protein_coding MGP_AJ_T0040231.1 MGP_AJ_G0021579.1 mouse_genomes_project 14 94686585 94832669 - Tbc1d4 protein_coding retained_intron MGP_AJ_T0040232.1 MGP_AJ_G0021579.1 mouse_genomes_project 14 94686807 94832504 - Tbc1d4 protein_coding retained_intron MGP_AJ_T0040233.1 MGP_AJ_G0021579.1 mouse_genomes_project 14 94686807 94832504 - Tbc1d4 protein_coding retained_intron MGP_AJ_T0040234.1 MGP_AJ_G0021579.1 mouse_genomes_project 14 94686976 94724859 - MGP_AJ_P0040234 Tbc1d4 protein_coding nonsense_mediated_decay MGP_AJ_T0040235.1 MGP_AJ_G0021579.1 mouse_genomes_project 14 94686987 94833028 - MGP_AJ_P0040235 Tbc1d4 protein_coding protein_coding MGP_AJ_T0040236.1 MGP_AJ_G0021579.1 mouse_genomes_project 14 94728457 94731021 - Tbc1d4 protein_coding retained_intron MGP_AJ_T0006712.1 MGP_AJ_G0005541.1 mouse_genomes_project 14 54793871 54795283 - Gm27010 lincRNA lincRNA MGP_AJ_T0038964.1 MGP_AJ_G0021143.1 mouse_genomes_project 14 33356699 33375979 + MGP_AJ_P0038964 Dydc1 protein_coding nonsense_mediated_decay MGP_AJ_T0038965.1 MGP_AJ_G0021143.1 mouse_genomes_project 14 33356699 33375986 + MGP_AJ_P0038965 Dydc1 protein_coding protein_coding MGP_AJ_T0038966.1 MGP_AJ_G0021143.1 mouse_genomes_project 14 33356728 33375982 + MGP_AJ_P0038966 Dydc1 protein_coding protein_coding MGP_AJ_T0013008.1 MGP_AJ_G0011103.1 mouse_genomes_project 14 45186843 45187607 - processed_pseudogene processed_pseudogene MGP_AJ_T0038503.1 MGP_AJ_G0021013.1 mouse_genomes_project 14 17003876 17008620 + MGP_AJ_P0038503 Rps24 protein_coding protein_coding MGP_AJ_T0038504.1 MGP_AJ_G0021013.1 mouse_genomes_project 14 17003876 17009334 + MGP_AJ_P0038504 Rps24 protein_coding protein_coding MGP_AJ_T0038308.1 MGP_AJ_G0020964.1 mouse_genomes_project 14 8734663 8799339 + MGP_AJ_P0038308 Top2b protein_coding protein_coding MGP_AJ_T0038309.1 MGP_AJ_G0020964.1 mouse_genomes_project 14 8758284 8762134 + Top2b protein_coding retained_intron MGP_AJ_T0038310.1 MGP_AJ_G0020964.1 mouse_genomes_project 14 8778473 8785582 + MGP_AJ_P0038310 Top2b protein_coding protein_coding MGP_AJ_T0038311.1 MGP_AJ_G0020964.1 mouse_genomes_project 14 8780634 8785261 + MGP_AJ_P0038311 Top2b protein_coding nonsense_mediated_decay MGP_AJ_T0038312.1 MGP_AJ_G0020964.1 mouse_genomes_project 14 8782268 8793989 + MGP_AJ_P0038312 Top2b protein_coding protein_coding MGP_AJ_T0038313.1 MGP_AJ_G0020964.1 mouse_genomes_project 14 8791839 8797057 + Top2b protein_coding retained_intron MGP_AJ_T0039804.1 MGP_AJ_G0021419.1 mouse_genomes_project 14 56580684 56625933 - MGP_AJ_P0039804 Blk protein_coding protein_coding MGP_AJ_T0038885.1 MGP_AJ_G0021109.1 mouse_genomes_project 14 26231399 26241463 + MGP_AJ_P0038885 Rbp3 protein_coding protein_coding MGP_AJ_T0038963.1 MGP_AJ_G0021142.1 mouse_genomes_project 14 33339384 33351824 - MGP_AJ_P0038963 Dydc2 protein_coding protein_coding MGP_AJ_T0038436.1 MGP_AJ_G0021002.1 mouse_genomes_project 14 14135142 14173060 - MGP_AJ_P0038436 Dupd1 protein_coding protein_coding MGP_AJ_T0038371.1 MGP_AJ_G0020984.1 mouse_genomes_project 14 12845398 12906142 - MGP_AJ_P0038371 Cfap70 protein_coding protein_coding MGP_AJ_T0038372.1 MGP_AJ_G0020984.1 mouse_genomes_project 14 12845398 12906142 - MGP_AJ_P0038372 Cfap70 protein_coding protein_coding MGP_AJ_T0038373.1 MGP_AJ_G0020984.1 mouse_genomes_project 14 12845398 12906142 - MGP_AJ_P0038373 Cfap70 protein_coding protein_coding MGP_AJ_T0038374.1 MGP_AJ_G0020984.1 mouse_genomes_project 14 12845401 12906139 - MGP_AJ_P0038374 Cfap70 protein_coding protein_coding MGP_AJ_T0038375.1 MGP_AJ_G0020984.1 mouse_genomes_project 14 12845529 12902538 - MGP_AJ_P0038375 Cfap70 protein_coding unknown_likely_coding MGP_AJ_T0038376.1 MGP_AJ_G0020984.1 mouse_genomes_project 14 12878036 12906143 - Cfap70 protein_coding retained_intron MGP_AJ_T0038377.1 MGP_AJ_G0020984.1 mouse_genomes_project 14 12878537 12883964 - Cfap70 protein_coding processed_transcript MGP_AJ_T0038378.1 MGP_AJ_G0020984.1 mouse_genomes_project 14 12893640 12906140 - MGP_AJ_P0038378 Cfap70 protein_coding protein_coding MGP_AJ_T0038379.1 MGP_AJ_G0020984.1 mouse_genomes_project 14 12901335 12902622 - Cfap70 protein_coding retained_intron MGP_AJ_T0038757.1 MGP_AJ_G0021074.1 mouse_genomes_project 14 23513943 23577382 - MGP_AJ_P0038757 Dnah1 protein_coding protein_coding MGP_AJ_T0003565.1 MGP_AJ_G0003234.1 mouse_genomes_project 14 56815007 56819901 - Gm15918 antisense antisense MGP_AJ_T0039138.1 MGP_AJ_G0021200.1 mouse_genomes_project 14 43008722 43009652 + MGP_AJ_P0039138 Olfr739 protein_coding protein_coding MGP_AJ_T0038821.1 MGP_AJ_G0021088.1 mouse_genomes_project 14 24428899 24442350 + MGP_AJ_P0038821 Ncoa4 protein_coding protein_coding MGP_AJ_T0006743.1 MGP_AJ_G0005565.1 mouse_genomes_project 14 117200766 117228663 + 1700024B18Rik lincRNA lincRNA MGP_AJ_T0002720.1 MGP_AJ_G0002592.1 mouse_genomes_project 14 46888913 46889465 + TR_V_pseudogene TR_V_pseudogene MGP_AJ_T0039141.1 MGP_AJ_G0021203.1 mouse_genomes_project 14 43049242 43050178 + MGP_AJ_P0039141 Olfr740 protein_coding protein_coding MGP_AJ_T0038593.1 MGP_AJ_G0021038.1 mouse_genomes_project 14 19242884 19312953 + MGP_AJ_P0038593 Il17rd protein_coding protein_coding MGP_AJ_T0039663.1 MGP_AJ_G0021369.1 mouse_genomes_project 14 50716022 50739282 - MGP_AJ_P0039663 Eef1akmt1 protein_coding protein_coding MGP_AJ_T0011367.1 MGP_AJ_G0009489.1 mouse_genomes_project 14 24097735 24098033 - Gm22876 misc_RNA misc_RNA MGP_AJ_T0038496.1 MGP_AJ_G0021011.1 mouse_genomes_project 14 16764745 16786969 + MGP_AJ_P0038496 E330034G19Rik protein_coding protein_coding MGP_AJ_T0038497.1 MGP_AJ_G0021011.1 mouse_genomes_project 14 16764767 16784880 + MGP_AJ_P0038497 E330034G19Rik protein_coding protein_coding MGP_AJ_T0038498.1 MGP_AJ_G0021011.1 mouse_genomes_project 14 16764815 16769815 + E330034G19Rik protein_coding retained_intron MGP_AJ_T0038499.1 MGP_AJ_G0021011.1 mouse_genomes_project 14 16764850 16786976 + MGP_AJ_P0038499 E330034G19Rik protein_coding protein_coding MGP_AJ_T0038500.1 MGP_AJ_G0021011.1 mouse_genomes_project 14 16764863 16769584 + MGP_AJ_P0038500 E330034G19Rik protein_coding protein_coding MGP_AJ_T0038501.1 MGP_AJ_G0021011.1 mouse_genomes_project 14 16764895 16786969 + MGP_AJ_P0038501 E330034G19Rik protein_coding protein_coding MGP_AJ_T0099497.1 MGP_AJ_G0037463.1 mouse_genomes_project 14 43531949 43532053 + Gm24689 snRNA snRNA MGP_AJ_T0012996.1 MGP_AJ_G0011091.1 mouse_genomes_project 14 32276085 32285741 + processed_pseudogene processed_pseudogene MGP_AJ_T0006734.1 MGP_AJ_G0005557.1 mouse_genomes_project 14 99602346 99670697 - 1700128A07Rik lincRNA lincRNA MGP_AJ_T0006735.1 MGP_AJ_G0005557.1 mouse_genomes_project 14 99636650 99670669 - 1700128A07Rik lincRNA lincRNA MGP_AJ_T0039153.1 MGP_AJ_G0021213.1 mouse_genomes_project 14 43439267 43486416 - MGP_AJ_P0039153 Tep1 protein_coding protein_coding MGP_AJ_T0038675.1 MGP_AJ_G0021061.1 mouse_genomes_project 14 23204341 23241282 + MGP_AJ_P0038675 Nek4 protein_coding protein_coding MGP_AJ_T0040259.1 MGP_AJ_G0021585.1 mouse_genomes_project 14 96245762 96255115 + MGP_AJ_P0040259 Acod1 protein_coding protein_coding MGP_AJ_T0039830.1 MGP_AJ_G0021431.1 mouse_genomes_project 14 57338567 57674120 - MGP_AJ_P0039830 Msra protein_coding protein_coding MGP_AJ_T0039552.1 MGP_AJ_G0021315.1 mouse_genomes_project 14 48666929 48674239 + MGP_AJ_P0039552 Rec8 protein_coding protein_coding MGP_AJ_T0039553.1 MGP_AJ_G0021315.1 mouse_genomes_project 14 48667075 48667709 + Rec8 protein_coding retained_intron MGP_AJ_T0039554.1 MGP_AJ_G0021315.1 mouse_genomes_project 14 48672412 48673354 + Rec8 protein_coding retained_intron MGP_AJ_T0039555.1 MGP_AJ_G0021315.1 mouse_genomes_project 14 48673762 48674239 + Rec8 protein_coding retained_intron MGP_AJ_T0038812.1 MGP_AJ_G0021086.1 mouse_genomes_project 14 24405137 24421474 + MGP_AJ_P0038812 Msmb protein_coding protein_coding MGP_AJ_T0038813.1 MGP_AJ_G0021086.1 mouse_genomes_project 14 24410698 24421474 + MGP_AJ_P0038813 Msmb protein_coding protein_coding MGP_AJ_T0038892.1 MGP_AJ_G0021115.1 mouse_genomes_project 14 26421146 26429644 - MGP_AJ_P0038892 Npy4r protein_coding protein_coding MGP_AJ_T0039218.1 MGP_AJ_G0021239.1 mouse_genomes_project 14 44720470 44723257 + Slc39a2 protein_coding retained_intron MGP_AJ_T0039219.1 MGP_AJ_G0021239.1 mouse_genomes_project 14 44721065 44724196 + MGP_AJ_P0039219 Slc39a2 protein_coding protein_coding MGP_AJ_T0039220.1 MGP_AJ_G0021239.1 mouse_genomes_project 14 44721112 44723250 + MGP_AJ_P0039220 Slc39a2 protein_coding protein_coding MGP_AJ_T0038942.1 MGP_AJ_G0021133.1 mouse_genomes_project 14 29277533 29300630 + MGP_AJ_P0038942 Lrit1 protein_coding unknown_likely_coding MGP_AJ_T0038943.1 MGP_AJ_G0021133.1 mouse_genomes_project 14 29289637 29300630 + MGP_AJ_P0038943 Lrit1 protein_coding protein_coding MGP_AJ_T0039139.1 MGP_AJ_G0021201.1 mouse_genomes_project 14 43008748 43009652 + MGP_AJ_P0039139 protein_coding protein_coding MGP_AJ_T0017403.1 MGP_AJ_G0015249.1 mouse_genomes_project 14 60664618 60674116 - Gm10860 processed_transcript processed_transcript MGP_AJ_T0009973.1 MGP_AJ_G0008095.1 mouse_genomes_project 14 16552361 16552415 + Mir7210 miRNA miRNA MGP_AJ_T0012976.1 MGP_AJ_G0011071.1 mouse_genomes_project 14 5698674 5698806 - processed_pseudogene processed_pseudogene MGP_AJ_T0002530.1 MGP_AJ_G0002432.1 mouse_genomes_project 14 47206414 47206480 + MGP_AJ_P0002530 Traj32 TR_J_gene TR_J_gene MGP_AJ_T0039200.1 MGP_AJ_G0021237.1 mouse_genomes_project 14 44685558 44686426 + MGP_AJ_P0039200 Ear6 protein_coding protein_coding MGP_AJ_T0039201.1 MGP_AJ_G0021237.1 mouse_genomes_project 14 44685627 44686426 + MGP_AJ_P0039201 Ear6 protein_coding protein_coding MGP_AJ_T0006740.1 MGP_AJ_G0005562.1 mouse_genomes_project 14 111902177 111910530 - Gm27198 lincRNA lincRNA MGP_AJ_T0010001.1 MGP_AJ_G0008123.1 mouse_genomes_project 14 61103934 61104044 - Mir6539 miRNA miRNA MGP_AJ_T0017397.1 MGP_AJ_G0015245.1 mouse_genomes_project 14 59517587 59519382 - 1700001G11Rik processed_transcript processed_transcript MGP_AJ_T0017398.1 MGP_AJ_G0015245.1 mouse_genomes_project 14 59517588 59519193 - 1700001G11Rik processed_transcript processed_transcript MGP_AJ_T0017399.1 MGP_AJ_G0015245.1 mouse_genomes_project 14 59517748 59519136 - 1700001G11Rik processed_transcript processed_transcript MGP_AJ_T0100795.1 MGP_AJ_G0038761.1 mouse_genomes_project 14 88211384 88211510 + Gm24680 snoRNA snoRNA MGP_AJ_T0040166.1 MGP_AJ_G0021549.1 mouse_genomes_project 14 71847547 72016162 - MGP_AJ_P0040166 Dgkh protein_coding protein_coding MGP_AJ_T0040040.1 MGP_AJ_G0021511.1 mouse_genomes_project 14 65815431 65977031 - MGP_AJ_P0040040 Fndc3a protein_coding protein_coding MGP_AJ_T0040041.1 MGP_AJ_G0021511.1 mouse_genomes_project 14 65817014 65886779 - MGP_AJ_P0040041 Fndc3a protein_coding protein_coding MGP_AJ_T0040042.1 MGP_AJ_G0021511.1 mouse_genomes_project 14 65842433 65846102 - Fndc3a protein_coding retained_intron MGP_AJ_T0040043.1 MGP_AJ_G0021511.1 mouse_genomes_project 14 65846125 65992717 - MGP_AJ_P0040043 Fndc3a protein_coding protein_coding MGP_AJ_T0040044.1 MGP_AJ_G0021511.1 mouse_genomes_project 14 65855946 65934406 - MGP_AJ_P0040044 Fndc3a protein_coding nonsense_mediated_decay MGP_AJ_T0040045.1 MGP_AJ_G0021511.1 mouse_genomes_project 14 65882193 65993172 - Fndc3a protein_coding retained_intron MGP_AJ_T0040046.1 MGP_AJ_G0021511.1 mouse_genomes_project 14 65931576 65993018 - Fndc3a protein_coding retained_intron MGP_AJ_T0039126.1 MGP_AJ_G0021191.1 mouse_genomes_project 14 42821401 42822382 - MGP_AJ_P0039126 Olfr731 protein_coding protein_coding MGP_AJ_T0002538.1 MGP_AJ_G0002440.1 mouse_genomes_project 14 47215860 47215923 + MGP_AJ_P0002538 Traj24 TR_J_gene TR_J_gene MGP_AJ_T0040360.1 MGP_AJ_G0021627.1 mouse_genomes_project 14 115262437 115266160 + MGP_AJ_P0040360 Timm8a2 protein_coding protein_coding MGP_AJ_T0039156.1 MGP_AJ_G0021216.1 mouse_genomes_project 14 43520127 43540365 - MGP_AJ_P0039156 Osgep protein_coding nonsense_mediated_decay MGP_AJ_T0039157.1 MGP_AJ_G0021216.1 mouse_genomes_project 14 43527255 43540424 - MGP_AJ_P0039157 Osgep protein_coding protein_coding MGP_AJ_T0039158.1 MGP_AJ_G0021216.1 mouse_genomes_project 14 43529203 43540361 - MGP_AJ_P0039158 Osgep protein_coding nonsense_mediated_decay MGP_AJ_T0039159.1 MGP_AJ_G0021216.1 mouse_genomes_project 14 43529207 43540403 - MGP_AJ_P0039159 Osgep protein_coding nonsense_mediated_decay MGP_AJ_T0039160.1 MGP_AJ_G0021216.1 mouse_genomes_project 14 43529207 43540219 - MGP_AJ_P0039160 Osgep protein_coding protein_coding MGP_AJ_T0039161.1 MGP_AJ_G0021216.1 mouse_genomes_project 14 43529309 43530891 - Osgep protein_coding retained_intron MGP_AJ_T0039162.1 MGP_AJ_G0021216.1 mouse_genomes_project 14 43530212 43540157 - MGP_AJ_P0039162 Osgep protein_coding protein_coding MGP_AJ_T0039163.1 MGP_AJ_G0021216.1 mouse_genomes_project 14 43530612 43540374 - Osgep protein_coding retained_intron MGP_AJ_T0006670.1 MGP_AJ_G0005511.1 mouse_genomes_project 14 17380657 17384666 + Gm10398 lincRNA lincRNA MGP_AJ_T0100777.1 MGP_AJ_G0038743.1 mouse_genomes_project 14 51825332 51825465 - Gm25614 snoRNA snoRNA MGP_AJ_T0099515.1 MGP_AJ_G0037481.1 mouse_genomes_project 14 91853298 91853405 + Gm26139 snRNA snRNA MGP_AJ_T0040007.1 MGP_AJ_G0021495.1 mouse_genomes_project 14 63639783 63697179 - MGP_AJ_P0040007 Piwil2 protein_coding protein_coding MGP_AJ_T0003538.1 MGP_AJ_G0003213.1 mouse_genomes_project 14 31133104 31198904 + Nrg3os antisense antisense MGP_AJ_T0039154.1 MGP_AJ_G0021214.1 mouse_genomes_project 14 43503083 43504950 - MGP_AJ_P0039154 Klhl33 protein_coding protein_coding MGP_AJ_T0039439.1 MGP_AJ_G0021289.1 mouse_genomes_project 14 47925013 47931113 - MGP_AJ_P0039439 Slc22a17 protein_coding protein_coding MGP_AJ_T0002506.1 MGP_AJ_G0002411.1 mouse_genomes_project 14 47178704 47178769 + Traj57 TR_J_gene processed_transcript MGP_AJ_T0002507.1 MGP_AJ_G0002411.1 mouse_genomes_project 14 47178706 47178769 + MGP_AJ_P0002507 Traj57 TR_J_gene TR_J_gene MGP_AJ_T0006661.1 MGP_AJ_G0005505.1 mouse_genomes_project 14 7806548 7821340 + B230110C06Rik lincRNA lincRNA MGP_AJ_T0006662.1 MGP_AJ_G0005505.1 mouse_genomes_project 14 7807109 7820802 + B230110C06Rik lincRNA lincRNA MGP_AJ_T0040151.1 MGP_AJ_G0021541.1 mouse_genomes_project 14 70327602 70396098 + MGP_AJ_P0040151 Ccdc122 protein_coding protein_coding MGP_AJ_T0040152.1 MGP_AJ_G0021541.1 mouse_genomes_project 14 70327612 70396098 + MGP_AJ_P0040152 Ccdc122 protein_coding protein_coding MGP_AJ_T0040153.1 MGP_AJ_G0021541.1 mouse_genomes_project 14 70327694 70395589 + MGP_AJ_P0040153 Ccdc122 protein_coding nonsense_mediated_decay MGP_AJ_T0040154.1 MGP_AJ_G0021541.1 mouse_genomes_project 14 70394868 70396151 + Ccdc122 protein_coding processed_transcript MGP_AJ_T0039148.1 MGP_AJ_G0021209.1 mouse_genomes_project 14 43347760 43355784 - MGP_AJ_P0039148 Olfr749 protein_coding protein_coding MGP_AJ_T0100761.1 MGP_AJ_G0038727.1 mouse_genomes_project 14 23268440 23268520 - Snord69 snoRNA snoRNA MGP_AJ_T0002613.1 MGP_AJ_G0002507.1 mouse_genomes_project 14 45870316 45870803 + MGP_AJ_P0002613 TR_V_gene TR_V_gene MGP_AJ_T0013052.1 MGP_AJ_G0011147.1 mouse_genomes_project 14 115733562 115734201 - processed_pseudogene processed_pseudogene MGP_AJ_T0000924.1 MGP_AJ_G0000858.1 mouse_genomes_project 14 82716336 82716771 + TEC TEC MGP_AJ_T0040297.1 MGP_AJ_G0021596.1 mouse_genomes_project 14 99103874 99108737 - MGP_AJ_P0040297 Spry2 protein_coding protein_coding MGP_AJ_T0009981.1 MGP_AJ_G0008103.1 mouse_genomes_project 14 37881184 37882039 - miRNA miRNA MGP_AJ_T0011373.1 MGP_AJ_G0009495.1 mouse_genomes_project 14 49621797 49621904 + Gm22431 misc_RNA misc_RNA MGP_AJ_T0017378.1 MGP_AJ_G0015242.1 mouse_genomes_project 14 37280701 37404741 + processed_transcript processed_transcript MGP_AJ_T0017379.1 MGP_AJ_G0015242.1 mouse_genomes_project 14 37280984 37422173 + processed_transcript processed_transcript MGP_AJ_T0017424.1 MGP_AJ_G0015258.1 mouse_genomes_project 14 111396057 111398585 + Gm4675 processed_transcript processed_transcript MGP_AJ_T0017425.1 MGP_AJ_G0015258.1 mouse_genomes_project 14 111396705 111421878 + Gm4675 processed_transcript processed_transcript MGP_AJ_T0017426.1 MGP_AJ_G0015258.1 mouse_genomes_project 14 111414394 111414937 + Gm4675 processed_transcript processed_transcript MGP_AJ_T0038787.1 MGP_AJ_G0021081.1 mouse_genomes_project 14 23901025 23927169 + Btd protein_coding processed_transcript MGP_AJ_T0038788.1 MGP_AJ_G0021081.1 mouse_genomes_project 14 23901054 23928577 + MGP_AJ_P0038788 Btd protein_coding protein_coding MGP_AJ_T0012983.1 MGP_AJ_G0011078.1 mouse_genomes_project 14 12836573 12836697 - processed_pseudogene processed_pseudogene MGP_AJ_T0006697.1 MGP_AJ_G0005529.1 mouse_genomes_project 14 42711948 42714765 + Gm45057 lincRNA lincRNA MGP_AJ_T0098590.1 MGP_AJ_G0036574.1 mouse_genomes_project 14 81427080 81427180 + Gm26405 rRNA rRNA MGP_AJ_T0003580.1 MGP_AJ_G0003245.1 mouse_genomes_project 14 69103413 69104999 - Gm4285 antisense antisense MGP_AJ_T0038954.1 MGP_AJ_G0021139.1 mouse_genomes_project 14 33103987 33176340 - MGP_AJ_P0038954 Sh2d4b protein_coding protein_coding MGP_AJ_T0038920.1 MGP_AJ_G0021127.1 mouse_genomes_project 14 26971277 27040691 + MGP_AJ_P0038920 Wapl protein_coding protein_coding MGP_AJ_T0038921.1 MGP_AJ_G0021127.1 mouse_genomes_project 14 26971313 27038579 + MGP_AJ_P0038921 Wapl protein_coding protein_coding MGP_AJ_T0038922.1 MGP_AJ_G0021127.1 mouse_genomes_project 14 26971471 27038674 + MGP_AJ_P0038922 Wapl protein_coding protein_coding MGP_AJ_T0038923.1 MGP_AJ_G0021127.1 mouse_genomes_project 14 26993479 27038939 + Wapl protein_coding processed_transcript MGP_AJ_T0038924.1 MGP_AJ_G0021127.1 mouse_genomes_project 14 27018738 27038941 + MGP_AJ_P0038924 Wapl protein_coding protein_coding MGP_AJ_T0038925.1 MGP_AJ_G0021127.1 mouse_genomes_project 14 27029578 27033861 + MGP_AJ_P0038925 Wapl protein_coding protein_coding MGP_AJ_T0003571.1 MGP_AJ_G0003240.1 mouse_genomes_project 14 62541586 62562742 + Gm27175 antisense antisense MGP_AJ_T0038284.1 MGP_AJ_G0020955.1 mouse_genomes_project 14 6549053 6550076 - MGP_AJ_P0038284 Olfr720 protein_coding protein_coding MGP_AJ_T0038285.1 MGP_AJ_G0020955.1 mouse_genomes_project 14 6549655 6560676 - MGP_AJ_P0038285 Olfr720 protein_coding protein_coding MGP_AJ_T0039945.1 MGP_AJ_G0021473.1 mouse_genomes_project 14 62425425 62429142 + MGP_AJ_P0039945 Nkx2-6 protein_coding protein_coding MGP_AJ_T0099504.1 MGP_AJ_G0037470.1 mouse_genomes_project 14 54502519 54502623 - Gm25716 snRNA snRNA MGP_AJ_T0040078.1 MGP_AJ_G0021516.1 mouse_genomes_project 14 66618051 66641072 - MGP_AJ_P0040078 Itm2b protein_coding protein_coding MGP_AJ_T0009983.1 MGP_AJ_G0008105.1 mouse_genomes_project 14 39442942 39443041 - Mir378c miRNA miRNA MGP_AJ_T0002520.1 MGP_AJ_G0002422.1 mouse_genomes_project 14 47195074 47195131 + MGP_AJ_P0002520 Traj43 TR_J_gene TR_J_gene MGP_AJ_T0013040.1 MGP_AJ_G0011135.1 mouse_genomes_project 14 92226355 92227281 - processed_pseudogene processed_pseudogene MGP_AJ_T0010015.1 MGP_AJ_G0008137.1 mouse_genomes_project 14 101576925 101577086 + Gm24818 miRNA miRNA MGP_AJ_T0038220.1 MGP_AJ_G0020931.1 mouse_genomes_project 14 87920 88391 + MGP_AJ_P0038220 Gm26661 protein_coding protein_coding MGP_AJ_T0039338.1 MGP_AJ_G0021262.1 mouse_genomes_project 14 47256348 47275128 - MGP_AJ_P0039338 Dad1 protein_coding protein_coding MGP_AJ_T0039339.1 MGP_AJ_G0021262.1 mouse_genomes_project 14 47260534 47274938 - MGP_AJ_P0039339 Dad1 protein_coding protein_coding MGP_AJ_T0038522.1 MGP_AJ_G0021019.1 mouse_genomes_project 14 18364872 18380002 - MGP_AJ_P0038522 Plac9b protein_coding protein_coding MGP_AJ_T0038526.1 MGP_AJ_G0021019.1 mouse_genomes_project 14 18365345 18379378 - MGP_AJ_P0038526 Plac9b protein_coding protein_coding MGP_AJ_T0039612.1 MGP_AJ_G0021334.1 mouse_genomes_project 14 48927328 48932665 - MGP_AJ_P0039612 Cbln3 protein_coding protein_coding MGP_AJ_T0039613.1 MGP_AJ_G0021334.1 mouse_genomes_project 14 48930469 48932641 - MGP_AJ_P0039613 Cbln3 protein_coding protein_coding MGP_AJ_T0003529.1 MGP_AJ_G0003204.1 mouse_genomes_project 14 17928342 17933733 - Zmiz1os1 antisense antisense MGP_AJ_T0040398.1 MGP_AJ_G0021638.1 mouse_genomes_project 14 116901570 117188670 + MGP_AJ_P0040398 Itgbl1 protein_coding protein_coding MGP_AJ_T0040399.1 MGP_AJ_G0021638.1 mouse_genomes_project 14 116901724 117188108 + MGP_AJ_P0040399 Itgbl1 protein_coding nonsense_mediated_decay MGP_AJ_T0040400.1 MGP_AJ_G0021638.1 mouse_genomes_project 14 116903023 117188670 + MGP_AJ_P0040400 Itgbl1 protein_coding protein_coding MGP_AJ_T0003534.1 MGP_AJ_G0003209.1 mouse_genomes_project 14 24559138 24561189 - Gm17210 antisense antisense MGP_AJ_T0000904.1 MGP_AJ_G0000838.1 mouse_genomes_project 14 14455284 14458949 + TEC TEC MGP_AJ_T0099483.1 MGP_AJ_G0037449.1 mouse_genomes_project 14 13905760 13905852 + Gm25864 snRNA snRNA MGP_AJ_T0009971.1 MGP_AJ_G0008093.1 mouse_genomes_project 14 13146943 13147012 + Mir6946 miRNA miRNA MGP_AJ_T0002514.1 MGP_AJ_G0002417.1 mouse_genomes_project 14 47190153 47190214 + MGP_AJ_P0002514 Traj48 TR_J_gene TR_J_gene MGP_AJ_T0002515.1 MGP_AJ_G0002417.1 mouse_genomes_project 14 47190154 47190214 + Traj48 TR_J_gene processed_transcript MGP_AJ_T0009990.1 MGP_AJ_G0008112.1 mouse_genomes_project 14 50968823 50968887 + Mir3077 miRNA miRNA MGP_AJ_T0039383.1 MGP_AJ_G0021273.1 mouse_genomes_project 14 47579154 47590070 - MGP_AJ_P0039383 Ajuba protein_coding protein_coding MGP_AJ_T0100808.1 MGP_AJ_G0038774.1 mouse_genomes_project 14 101825312 101825430 + Gm24229 snoRNA snoRNA MGP_AJ_T0039935.1 MGP_AJ_G0021466.1 mouse_genomes_project 14 60995119 61176713 - MGP_AJ_P0039935 Dock5 protein_coding protein_coding MGP_AJ_T0002492.1 MGP_AJ_G0002399.1 mouse_genomes_project 14 47139875 47139884 + MGP_AJ_P0002492 Trdd1 TR_D_gene TR_D_gene MGP_AJ_T0002493.1 MGP_AJ_G0002399.1 mouse_genomes_project 14 47139875 47139886 + Trdd1 TR_D_gene processed_transcript MGP_AJ_T0039101.1 MGP_AJ_G0021178.1 mouse_genomes_project 14 41608297 41629412 + MGP_AJ_P0039101 Ap5m1 protein_coding protein_coding MGP_AJ_T0038898.1 MGP_AJ_G0021119.1 mouse_genomes_project 14 26591763 26629044 + MGP_AJ_P0038898 Glud1 protein_coding protein_coding MGP_AJ_T0038899.1 MGP_AJ_G0021119.1 mouse_genomes_project 14 26591934 26627623 + MGP_AJ_P0038899 Glud1 protein_coding unknown_likely_coding MGP_AJ_T0038900.1 MGP_AJ_G0021119.1 mouse_genomes_project 14 26610329 26616371 + Glud1 protein_coding retained_intron MGP_AJ_T0038901.1 MGP_AJ_G0021119.1 mouse_genomes_project 14 26614346 26621927 + Glud1 protein_coding processed_transcript MGP_AJ_T0038902.1 MGP_AJ_G0021119.1 mouse_genomes_project 14 26616413 26626067 + MGP_AJ_P0038902 Glud1 protein_coding protein_coding MGP_AJ_T0038903.1 MGP_AJ_G0021119.1 mouse_genomes_project 14 26617519 26625857 + Glud1 protein_coding processed_transcript MGP_AJ_T0003583.1 MGP_AJ_G0003247.1 mouse_genomes_project 14 96888055 96894515 - Slain1os antisense antisense MGP_AJ_T0038382.1 MGP_AJ_G0020986.1 mouse_genomes_project 14 12936381 12950306 - MGP_AJ_P0038382 Mss51 protein_coding protein_coding MGP_AJ_T0040359.1 MGP_AJ_G0021626.1 mouse_genomes_project 14 115178806 115191693 - MGP_AJ_P0040359 Gpr183 protein_coding protein_coding MGP_AJ_T0099486.1 MGP_AJ_G0037452.1 mouse_genomes_project 14 25922920 25923027 + Gm26228 snRNA snRNA MGP_AJ_T0012993.1 MGP_AJ_G0011088.1 mouse_genomes_project 14 23056477 23057253 + processed_pseudogene processed_pseudogene MGP_AJ_T0039106.1 MGP_AJ_G0021180.1 mouse_genomes_project 14 41760375 41783170 - MGP_AJ_P0039106 1700011H14Rik protein_coding unknown_likely_coding MGP_AJ_T0039107.1 MGP_AJ_G0021180.1 mouse_genomes_project 14 41764249 41783341 - MGP_AJ_P0039107 1700011H14Rik protein_coding protein_coding MGP_AJ_T0039108.1 MGP_AJ_G0021180.1 mouse_genomes_project 14 41764483 41783310 - MGP_AJ_P0039108 1700011H14Rik protein_coding nonsense_mediated_decay MGP_AJ_T0039109.1 MGP_AJ_G0021180.1 mouse_genomes_project 14 41770699 41783310 - MGP_AJ_P0039109 1700011H14Rik protein_coding protein_coding MGP_AJ_T0006687.1 MGP_AJ_G0005522.1 mouse_genomes_project 14 38156267 38158142 - A530076I17Rik lincRNA lincRNA MGP_AJ_T0006682.1 MGP_AJ_G0005518.1 mouse_genomes_project 14 24731167 24749670 + Gm2990 lincRNA lincRNA MGP_AJ_T0099521.1 MGP_AJ_G0037487.1 mouse_genomes_project 14 98457145 98457252 + Gm22290 snRNA snRNA MGP_AJ_T0006665.1 MGP_AJ_G0005508.1 mouse_genomes_project 14 17124573 17135172 - lincRNA lincRNA MGP_AJ_T0006666.1 MGP_AJ_G0005508.1 mouse_genomes_project 14 17132978 17135165 - lincRNA lincRNA MGP_AJ_T0039821.1 MGP_AJ_G0021426.1 mouse_genomes_project 14 57183292 57200204 - MGP_AJ_P0039821 4930578I06Rik protein_coding protein_coding MGP_AJ_T0039164.1 MGP_AJ_G0021217.1 mouse_genomes_project 14 43540498 43543280 + MGP_AJ_P0039164 Apex1 protein_coding protein_coding MGP_AJ_T0039165.1 MGP_AJ_G0021217.1 mouse_genomes_project 14 43540499 43542692 + MGP_AJ_P0039165 Apex1 protein_coding protein_coding MGP_AJ_T0039166.1 MGP_AJ_G0021217.1 mouse_genomes_project 14 43540508 43541164 + MGP_AJ_P0039166 Apex1 protein_coding protein_coding MGP_AJ_T0039167.1 MGP_AJ_G0021217.1 mouse_genomes_project 14 43540815 43543280 + MGP_AJ_P0039167 Apex1 protein_coding protein_coding MGP_AJ_T0102334.1 MGP_AJ_G0040076.1 mouse_genomes_project 14 36240997 36241457 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0003540.1 MGP_AJ_G0003215.1 mouse_genomes_project 14 37418540 37454488 - Gm17173 antisense antisense MGP_AJ_T0006719.1 MGP_AJ_G0005547.1 mouse_genomes_project 14 57798121 57798928 + Mir124a-1hg lincRNA lincRNA MGP_AJ_T0006720.1 MGP_AJ_G0005547.1 mouse_genomes_project 14 57798866 57804953 + Mir124a-1hg lincRNA lincRNA MGP_AJ_T0006721.1 MGP_AJ_G0005547.1 mouse_genomes_project 14 57799387 57801358 + Mir124a-1hg lincRNA lincRNA MGP_AJ_T0006722.1 MGP_AJ_G0005547.1 mouse_genomes_project 14 57800576 57801573 + Mir124a-1hg lincRNA lincRNA MGP_AJ_T0003537.1 MGP_AJ_G0003212.1 mouse_genomes_project 14 30765105 30775263 + Gm20641 antisense antisense MGP_AJ_T0038231.1 MGP_AJ_G0020937.1 mouse_genomes_project 14 479498 486536 - MGP_AJ_P0038231 Pdhb protein_coding protein_coding MGP_AJ_T0002529.1 MGP_AJ_G0002431.1 mouse_genomes_project 14 47205653 47205710 + MGP_AJ_P0002529 Traj33 TR_J_gene TR_J_gene MGP_AJ_T0038889.1 MGP_AJ_G0021113.1 mouse_genomes_project 14 26328510 26350852 + MGP_AJ_P0038889 Antxrl protein_coding protein_coding MGP_AJ_T0038410.1 MGP_AJ_G0020998.1 mouse_genomes_project 14 13386232 13491651 + MGP_AJ_P0038410 Vcl protein_coding protein_coding MGP_AJ_T0040196.1 MGP_AJ_G0021564.1 mouse_genomes_project 14 77724893 77820977 + MGP_AJ_P0040196 Pcdh17 protein_coding protein_coding MGP_AJ_T0039902.1 MGP_AJ_G0021456.1 mouse_genomes_project 14 60001258 60010885 + MGP_AJ_P0039902 Gm10032 protein_coding protein_coding MGP_AJ_T0039254.1 MGP_AJ_G0021246.1 mouse_genomes_project 14 44855688 44857595 - MGP_AJ_P0039254 Olfr221 protein_coding protein_coding MGP_AJ_T0040325.1 MGP_AJ_G0021613.1 mouse_genomes_project 14 112107558 112150180 + MGP_AJ_P0040325 Dnajc3 protein_coding protein_coding MGP_AJ_T0039847.1 MGP_AJ_G0021437.1 mouse_genomes_project 14 58486512 58535777 + MGP_AJ_P0039847 Fbxo16 protein_coding unknown_likely_coding MGP_AJ_T0039848.1 MGP_AJ_G0021437.1 mouse_genomes_project 14 58486526 58535771 + MGP_AJ_P0039848 Fbxo16 protein_coding protein_coding MGP_AJ_T0039619.1 MGP_AJ_G0021340.1 mouse_genomes_project 14 49135608 49138034 - MGP_AJ_P0039619 Mcpt4 protein_coding protein_coding MGP_AJ_T0039684.1 MGP_AJ_G0021372.1 mouse_genomes_project 14 50968579 50975380 + MGP_AJ_P0039684 Sap18 protein_coding protein_coding MGP_AJ_T0039685.1 MGP_AJ_G0021372.1 mouse_genomes_project 14 50968615 50975378 + MGP_AJ_P0039685 Sap18 protein_coding protein_coding MGP_AJ_T0039686.1 MGP_AJ_G0021372.1 mouse_genomes_project 14 50968617 50975369 + MGP_AJ_P0039686 Sap18 protein_coding protein_coding MGP_AJ_T0039687.1 MGP_AJ_G0021372.1 mouse_genomes_project 14 50968663 50969249 + Sap18 protein_coding retained_intron MGP_AJ_T0038229.1 MGP_AJ_G0020936.1 mouse_genomes_project 14 409298 478619 + MGP_AJ_P0038229 Pxk protein_coding protein_coding MGP_AJ_T0038230.1 MGP_AJ_G0020936.1 mouse_genomes_project 14 409298 478619 + MGP_AJ_P0038230 Pxk protein_coding protein_coding MGP_AJ_T0040128.1 MGP_AJ_G0021535.1 mouse_genomes_project 14 69217017 69228136 + MGP_AJ_P0040128 Kctd4 protein_coding protein_coding MGP_AJ_T0039780.1 MGP_AJ_G0021408.1 mouse_genomes_project 14 55848407 55934252 - MGP_AJ_P0039780 Ints6 protein_coding protein_coding MGP_AJ_T0039781.1 MGP_AJ_G0021408.1 mouse_genomes_project 14 55865792 55933798 - MGP_AJ_P0039781 Ints6 protein_coding unknown_likely_coding MGP_AJ_T0039364.1 MGP_AJ_G0021268.1 mouse_genomes_project 14 47442366 47451863 + MGP_AJ_P0039364 Mmp14 protein_coding protein_coding MGP_AJ_T0039365.1 MGP_AJ_G0021268.1 mouse_genomes_project 14 47442377 47446972 + MGP_AJ_P0039365 Mmp14 protein_coding nonsense_mediated_decay MGP_AJ_T0039366.1 MGP_AJ_G0021268.1 mouse_genomes_project 14 47442418 47446944 + Mmp14 protein_coding retained_intron MGP_AJ_T0039367.1 MGP_AJ_G0021268.1 mouse_genomes_project 14 47442472 47444020 + Mmp14 protein_coding retained_intron MGP_AJ_T0039368.1 MGP_AJ_G0021268.1 mouse_genomes_project 14 47442620 47453044 + MGP_AJ_P0039368 Mmp14 protein_coding unknown_likely_coding MGP_AJ_T0039369.1 MGP_AJ_G0021268.1 mouse_genomes_project 14 47443190 47446655 + MGP_AJ_P0039369 Mmp14 protein_coding protein_coding MGP_AJ_T0013007.1 MGP_AJ_G0011102.1 mouse_genomes_project 14 45186839 45187606 - processed_pseudogene processed_pseudogene MGP_AJ_T0003566.1 MGP_AJ_G0003235.1 mouse_genomes_project 14 57314499 57319602 - 4930471C04Rik antisense antisense MGP_AJ_T0038370.1 MGP_AJ_G0020983.1 mouse_genomes_project 14 12842439 12844764 - MGP_AJ_P0038370 Mrps16 protein_coding protein_coding MGP_AJ_T0017427.1 MGP_AJ_G0015259.1 mouse_genomes_project 14 112269334 112285460 + Gm16835 processed_transcript processed_transcript MGP_AJ_T0040326.1 MGP_AJ_G0021614.1 mouse_genomes_project 14 112153123 112174825 - Uggt2 protein_coding retained_intron MGP_AJ_T0040327.1 MGP_AJ_G0021614.1 mouse_genomes_project 14 112153123 112269800 - MGP_AJ_P0040327 Uggt2 protein_coding protein_coding MGP_AJ_T0040328.1 MGP_AJ_G0021614.1 mouse_genomes_project 14 112154276 112174585 - Uggt2 protein_coding retained_intron MGP_AJ_T0040329.1 MGP_AJ_G0021614.1 mouse_genomes_project 14 112154501 112174106 - Uggt2 protein_coding processed_transcript MGP_AJ_T0040330.1 MGP_AJ_G0021614.1 mouse_genomes_project 14 112154898 112174759 - Uggt2 protein_coding retained_intron MGP_AJ_T0040331.1 MGP_AJ_G0021614.1 mouse_genomes_project 14 112165237 112176423 - Uggt2 protein_coding processed_transcript MGP_AJ_T0040332.1 MGP_AJ_G0021614.1 mouse_genomes_project 14 112168898 112175531 - Uggt2 protein_coding retained_intron MGP_AJ_T0040333.1 MGP_AJ_G0021614.1 mouse_genomes_project 14 112169064 112174918 - Uggt2 protein_coding processed_transcript MGP_AJ_T0040334.1 MGP_AJ_G0021614.1 mouse_genomes_project 14 112170014 112186879 - MGP_AJ_P0040334 Uggt2 protein_coding protein_coding MGP_AJ_T0040335.1 MGP_AJ_G0021614.1 mouse_genomes_project 14 112181770 112228030 - MGP_AJ_P0040335 Uggt2 protein_coding nonsense_mediated_decay MGP_AJ_T0040336.1 MGP_AJ_G0021614.1 mouse_genomes_project 14 112181770 112201987 - MGP_AJ_P0040336 Uggt2 protein_coding nonsense_mediated_decay MGP_AJ_T0040337.1 MGP_AJ_G0021614.1 mouse_genomes_project 14 112202114 112205716 - Uggt2 protein_coding retained_intron MGP_AJ_T0040338.1 MGP_AJ_G0021614.1 mouse_genomes_project 14 112213904 112219507 - Uggt2 protein_coding retained_intron MGP_AJ_T0040339.1 MGP_AJ_G0021614.1 mouse_genomes_project 14 112228989 112269800 - Uggt2 protein_coding retained_intron MGP_AJ_T0006723.1 MGP_AJ_G0005548.1 mouse_genomes_project 14 62585538 62594625 - Gm27174 lincRNA lincRNA MGP_AJ_T0038601.1 MGP_AJ_G0021043.1 mouse_genomes_project 14 20715660 20718883 + Wnt5a protein_coding processed_transcript MGP_AJ_T0038602.1 MGP_AJ_G0021043.1 mouse_genomes_project 14 20715869 20735129 + MGP_AJ_P0038602 Wnt5a protein_coding protein_coding MGP_AJ_T0038603.1 MGP_AJ_G0021043.1 mouse_genomes_project 14 20720381 20721689 + Wnt5a protein_coding processed_transcript MGP_AJ_T0038604.1 MGP_AJ_G0021043.1 mouse_genomes_project 14 20721153 20733113 + Wnt5a protein_coding processed_transcript MGP_AJ_T0038605.1 MGP_AJ_G0021043.1 mouse_genomes_project 14 20721214 20721671 + Wnt5a protein_coding processed_transcript MGP_AJ_T0040267.1 MGP_AJ_G0021588.1 mouse_genomes_project 14 96314548 96357483 - MGP_AJ_P0040267 Mycbp2 protein_coding protein_coding MGP_AJ_T0040268.1 MGP_AJ_G0021588.1 mouse_genomes_project 14 96314548 96547351 - MGP_AJ_P0040268 Mycbp2 protein_coding protein_coding MGP_AJ_T0040269.1 MGP_AJ_G0021588.1 mouse_genomes_project 14 96314548 96546969 - MGP_AJ_P0040269 Mycbp2 protein_coding protein_coding MGP_AJ_T0040270.1 MGP_AJ_G0021588.1 mouse_genomes_project 14 96315257 96547068 - MGP_AJ_P0040270 Mycbp2 protein_coding unknown_likely_coding MGP_AJ_T0040271.1 MGP_AJ_G0021588.1 mouse_genomes_project 14 96315270 96316534 - Mycbp2 protein_coding processed_transcript MGP_AJ_T0040272.1 MGP_AJ_G0021588.1 mouse_genomes_project 14 96339257 96353850 - Mycbp2 protein_coding retained_intron MGP_AJ_T0040273.1 MGP_AJ_G0021588.1 mouse_genomes_project 14 96357532 96393837 - MGP_AJ_P0040273 Mycbp2 protein_coding protein_coding MGP_AJ_T0040274.1 MGP_AJ_G0021588.1 mouse_genomes_project 14 96512608 96547365 - Mycbp2 protein_coding retained_intron MGP_AJ_T0038278.1 MGP_AJ_G0020952.1 mouse_genomes_project 14 6320873 6333950 - MGP_AJ_P0038278 Thoc7 protein_coding protein_coding MGP_AJ_T0038968.1 MGP_AJ_G0021145.1 mouse_genomes_project 14 33415775 33418470 + MGP_AJ_P0038968 Sftpa1 protein_coding protein_coding MGP_AJ_T0038969.1 MGP_AJ_G0021145.1 mouse_genomes_project 14 33415781 33420446 + MGP_AJ_P0038969 Sftpa1 protein_coding protein_coding MGP_AJ_T0040023.1 MGP_AJ_G0021504.1 mouse_genomes_project 14 63852519 63868971 - MGP_AJ_P0040023 Fam160b2 protein_coding protein_coding MGP_AJ_T0039596.1 MGP_AJ_G0021325.1 mouse_genomes_project 14 48792800 48793441 - Dhrs1 protein_coding retained_intron MGP_AJ_T0039597.1 MGP_AJ_G0021325.1 mouse_genomes_project 14 48792800 48799379 - Dhrs1 protein_coding retained_intron MGP_AJ_T0039598.1 MGP_AJ_G0021325.1 mouse_genomes_project 14 48792802 48799470 - MGP_AJ_P0039598 Dhrs1 protein_coding protein_coding MGP_AJ_T0039599.1 MGP_AJ_G0021325.1 mouse_genomes_project 14 48793014 48793925 - Dhrs1 protein_coding retained_intron MGP_AJ_T0040302.1 MGP_AJ_G0021600.1 mouse_genomes_project 14 103786617 103787497 + MGP_AJ_P0040302 protein_coding protein_coding MGP_AJ_T0039850.1 MGP_AJ_G0021439.1 mouse_genomes_project 14 58616216 58642263 - MGP_AJ_P0039850 Pnoc protein_coding protein_coding MGP_AJ_T0038883.1 MGP_AJ_G0021107.1 mouse_genomes_project 14 26200774 26212468 + MGP_AJ_P0038883 Gdf10 protein_coding protein_coding MGP_AJ_T0039123.1 MGP_AJ_G0021188.1 mouse_genomes_project 14 42729338 42730274 - MGP_AJ_P0039123 Olfr728 protein_coding protein_coding MGP_AJ_T0040039.1 MGP_AJ_G0021510.1 mouse_genomes_project 14 64157116 64249769 + MGP_AJ_P0040039 Gfra2 protein_coding protein_coding MGP_AJ_T0100774.1 MGP_AJ_G0038740.1 mouse_genomes_project 14 49322377 49322503 + Gm24118 snoRNA snoRNA MGP_AJ_T0013028.1 MGP_AJ_G0011123.1 mouse_genomes_project 14 58055745 58056064 + processed_pseudogene processed_pseudogene MGP_AJ_T0038290.1 MGP_AJ_G0020958.1 mouse_genomes_project 14 6774784 6775881 + MGP_AJ_P0038290 Olfr721-ps1 protein_coding protein_coding MGP_AJ_T0038291.1 MGP_AJ_G0020958.1 mouse_genomes_project 14 6774906 6775881 + MGP_AJ_P0038291 Olfr721-ps1 protein_coding protein_coding MGP_AJ_T0040257.1 MGP_AJ_G0021584.1 mouse_genomes_project 14 96180419 96186474 - MGP_AJ_P0040257 Kctd12 protein_coding protein_coding MGP_AJ_T0040258.1 MGP_AJ_G0021584.1 mouse_genomes_project 14 96181373 96185388 - Kctd12 protein_coding processed_transcript MGP_AJ_T0012997.1 MGP_AJ_G0011092.1 mouse_genomes_project 14 32848356 32849359 + processed_pseudogene processed_pseudogene MGP_AJ_T0039664.1 MGP_AJ_G0021370.1 mouse_genomes_project 14 50748688 50835369 - MGP_AJ_P0039664 Xpo4 protein_coding protein_coding MGP_AJ_T0039665.1 MGP_AJ_G0021370.1 mouse_genomes_project 14 50749755 50835002 - MGP_AJ_P0039665 Xpo4 protein_coding protein_coding MGP_AJ_T0039666.1 MGP_AJ_G0021370.1 mouse_genomes_project 14 50764343 50834931 - MGP_AJ_P0039666 Xpo4 protein_coding nonsense_mediated_decay MGP_AJ_T0039667.1 MGP_AJ_G0021370.1 mouse_genomes_project 14 50796795 50834895 - MGP_AJ_P0039667 Xpo4 protein_coding nonsense_mediated_decay MGP_AJ_T0039668.1 MGP_AJ_G0021370.1 mouse_genomes_project 14 50809125 50834903 - Xpo4 protein_coding processed_transcript MGP_AJ_T0039669.1 MGP_AJ_G0021370.1 mouse_genomes_project 14 50809131 50835174 - Xpo4 protein_coding retained_intron MGP_AJ_T0039670.1 MGP_AJ_G0021370.1 mouse_genomes_project 14 50809146 50834906 - Xpo4 protein_coding retained_intron MGP_AJ_T0039671.1 MGP_AJ_G0021370.1 mouse_genomes_project 14 50809375 50835369 - MGP_AJ_P0039671 Xpo4 protein_coding nonsense_mediated_decay MGP_AJ_T0039673.1 MGP_AJ_G0021370.1 mouse_genomes_project 14 50809862 50816004 - Xpo4 protein_coding retained_intron MGP_AJ_T0039674.1 MGP_AJ_G0021370.1 mouse_genomes_project 14 50815308 50834928 - Xpo4 protein_coding retained_intron MGP_AJ_T0038703.1 MGP_AJ_G0021066.1 mouse_genomes_project 14 23341791 23382688 - MGP_AJ_P0038703 Smim4 protein_coding protein_coding MGP_AJ_T0038704.1 MGP_AJ_G0021066.1 mouse_genomes_project 14 23342318 23382708 - MGP_AJ_P0038704 Smim4 protein_coding protein_coding MGP_AJ_T0038705.1 MGP_AJ_G0021066.1 mouse_genomes_project 14 23378435 23382633 - MGP_AJ_P0038705 Smim4 protein_coding protein_coding MGP_AJ_T0038706.1 MGP_AJ_G0021066.1 mouse_genomes_project 14 23378732 23382725 - MGP_AJ_P0038706 Smim4 protein_coding protein_coding MGP_AJ_T0040120.1 MGP_AJ_G0021531.1 mouse_genomes_project 14 68961930 69014816 - MGP_AJ_P0040120 Cog3 protein_coding protein_coding MGP_AJ_T0006707.1 MGP_AJ_G0005537.1 mouse_genomes_project 14 49781043 49784125 - Gm16973 lincRNA lincRNA MGP_AJ_T0006708.1 MGP_AJ_G0005537.1 mouse_genomes_project 14 49782110 49786032 - Gm16973 lincRNA lincRNA MGP_AJ_T0017423.1 MGP_AJ_G0015257.1 mouse_genomes_project 14 108974676 109057511 - Gm20713 processed_transcript processed_transcript MGP_AJ_T0040361.1 MGP_AJ_G0021628.1 mouse_genomes_project 14 115336815 115390184 + MGP_AJ_P0040361 Tm9sf2 protein_coding protein_coding MGP_AJ_T0040362.1 MGP_AJ_G0021628.1 mouse_genomes_project 14 115336915 115368044 + MGP_AJ_P0040362 Tm9sf2 protein_coding nonsense_mediated_decay MGP_AJ_T0040363.1 MGP_AJ_G0021628.1 mouse_genomes_project 14 115337045 115389296 + MGP_AJ_P0040363 Tm9sf2 protein_coding protein_coding MGP_AJ_T0011369.1 MGP_AJ_G0009491.1 mouse_genomes_project 14 27832968 27833136 + Gm27617 misc_RNA misc_RNA MGP_AJ_T0003579.1 MGP_AJ_G0003244.1 mouse_genomes_project 14 68449501 68451700 - Gm15629 antisense antisense MGP_AJ_T0038257.1 MGP_AJ_G0020944.1 mouse_genomes_project 14 3529779 3533831 + MGP_AJ_P0038257 Rpl21-ps4 protein_coding protein_coding MGP_AJ_T0040304.1 MGP_AJ_G0021602.1 mouse_genomes_project 14 104905871 104914996 + MGP_AJ_P0040304 Slitrk5 protein_coding protein_coding MGP_AJ_T0039531.1 MGP_AJ_G0021312.1 mouse_genomes_project 14 48635271 48639135 - MGP_AJ_P0039531 Psme2 protein_coding protein_coding MGP_AJ_T0039532.1 MGP_AJ_G0021312.1 mouse_genomes_project 14 48635272 48639149 - MGP_AJ_P0039532 Psme2 protein_coding protein_coding MGP_AJ_T0039533.1 MGP_AJ_G0021312.1 mouse_genomes_project 14 48635277 48636652 - Psme2 protein_coding retained_intron MGP_AJ_T0039534.1 MGP_AJ_G0021312.1 mouse_genomes_project 14 48635277 48637559 - Psme2 protein_coding retained_intron MGP_AJ_T0039535.1 MGP_AJ_G0021312.1 mouse_genomes_project 14 48636101 48638197 - Psme2 protein_coding retained_intron MGP_AJ_T0039536.1 MGP_AJ_G0021312.1 mouse_genomes_project 14 48636119 48639161 - MGP_AJ_P0039536 Psme2 protein_coding protein_coding MGP_AJ_T0039537.1 MGP_AJ_G0021312.1 mouse_genomes_project 14 48636130 48638912 - Psme2 protein_coding retained_intron MGP_AJ_T0039538.1 MGP_AJ_G0021312.1 mouse_genomes_project 14 48637241 48639021 - Psme2 protein_coding retained_intron MGP_AJ_T0039539.1 MGP_AJ_G0021312.1 mouse_genomes_project 14 48637364 48638996 - Psme2 protein_coding retained_intron MGP_AJ_T0039540.1 MGP_AJ_G0021312.1 mouse_genomes_project 14 48638045 48638943 - Psme2 protein_coding retained_intron MGP_AJ_T0040221.1 MGP_AJ_G0021574.1 mouse_genomes_project 14 92311576 92334716 - MGP_AJ_P0040221 Dis3 protein_coding protein_coding MGP_AJ_T0038945.1 MGP_AJ_G0021135.1 mouse_genomes_project 14 29314002 29334424 - MGP_AJ_P0038945 Cdhr1 protein_coding protein_coding MGP_AJ_T0039739.1 MGP_AJ_G0021392.1 mouse_genomes_project 14 53785615 53845320 + MGP_AJ_P0039739 Spata13 protein_coding protein_coding MGP_AJ_T0039740.1 MGP_AJ_G0021392.1 mouse_genomes_project 14 53786348 53845361 + MGP_AJ_P0039740 Spata13 protein_coding protein_coding MGP_AJ_T0039741.1 MGP_AJ_G0021392.1 mouse_genomes_project 14 53786369 53844846 + Spata13 protein_coding processed_transcript MGP_AJ_T0039742.1 MGP_AJ_G0021392.1 mouse_genomes_project 14 53844773 53920250 + MGP_AJ_P0039742 Spata13 protein_coding protein_coding MGP_AJ_T0039743.1 MGP_AJ_G0021392.1 mouse_genomes_project 14 53845927 53864533 + MGP_AJ_P0039743 Spata13 protein_coding protein_coding MGP_AJ_T0039744.1 MGP_AJ_G0021392.1 mouse_genomes_project 14 53857039 53860957 + Spata13 protein_coding processed_transcript MGP_AJ_T0039745.1 MGP_AJ_G0021392.1 mouse_genomes_project 14 53860815 53905752 + MGP_AJ_P0039745 Spata13 protein_coding protein_coding MGP_AJ_T0039746.1 MGP_AJ_G0021392.1 mouse_genomes_project 14 53888666 53920239 + MGP_AJ_P0039746 Spata13 protein_coding protein_coding MGP_AJ_T0039747.1 MGP_AJ_G0021392.1 mouse_genomes_project 14 53906812 53918356 + Spata13 protein_coding retained_intron MGP_AJ_T0039779.1 MGP_AJ_G0021407.1 mouse_genomes_project 14 55835751 55864456 + MGP_AJ_P0039779 Serpine3 protein_coding protein_coding MGP_AJ_T0039649.1 MGP_AJ_G0021361.1 mouse_genomes_project 14 50124044 50127308 + MGP_AJ_P0039649 B020004C17Rik protein_coding protein_coding MGP_AJ_T0006714.1 MGP_AJ_G0005543.1 mouse_genomes_project 14 55377738 55380176 - Gm26969 lincRNA lincRNA MGP_AJ_T0038956.1 MGP_AJ_G0021141.1 mouse_genomes_project 14 33278784 33289276 - MGP_AJ_P0038956 Fam213a protein_coding protein_coding MGP_AJ_T0038957.1 MGP_AJ_G0021141.1 mouse_genomes_project 14 33279582 33289591 - MGP_AJ_P0038957 Fam213a protein_coding protein_coding MGP_AJ_T0038958.1 MGP_AJ_G0021141.1 mouse_genomes_project 14 33282784 33290037 - MGP_AJ_P0038958 Fam213a protein_coding protein_coding MGP_AJ_T0038959.1 MGP_AJ_G0021141.1 mouse_genomes_project 14 33283929 33288162 - Fam213a protein_coding retained_intron MGP_AJ_T0038960.1 MGP_AJ_G0021141.1 mouse_genomes_project 14 33283967 33292034 - MGP_AJ_P0038960 Fam213a protein_coding protein_coding MGP_AJ_T0038961.1 MGP_AJ_G0021141.1 mouse_genomes_project 14 33284009 33298829 - MGP_AJ_P0038961 Fam213a protein_coding protein_coding MGP_AJ_T0038962.1 MGP_AJ_G0021141.1 mouse_genomes_project 14 33289098 33291978 - MGP_AJ_P0038962 Fam213a protein_coding protein_coding MGP_AJ_T0038995.1 MGP_AJ_G0021157.1 mouse_genomes_project 14 38078359 38147775 - MGP_AJ_P0038995 Ddhd1 protein_coding protein_coding MGP_AJ_T0038996.1 MGP_AJ_G0021157.1 mouse_genomes_project 14 38078670 38107456 - Ddhd1 protein_coding retained_intron MGP_AJ_T0038997.1 MGP_AJ_G0021157.1 mouse_genomes_project 14 38079840 38147730 - MGP_AJ_P0038997 Ddhd1 protein_coding nonsense_mediated_decay MGP_AJ_T0038998.1 MGP_AJ_G0021157.1 mouse_genomes_project 14 38079840 38147730 - MGP_AJ_P0038998 Ddhd1 protein_coding protein_coding MGP_AJ_T0038999.1 MGP_AJ_G0021157.1 mouse_genomes_project 14 38079911 38109374 - Ddhd1 protein_coding retained_intron MGP_AJ_T0039000.1 MGP_AJ_G0021157.1 mouse_genomes_project 14 38080128 38087928 - MGP_AJ_P0039000 Ddhd1 protein_coding nonsense_mediated_decay MGP_AJ_T0039001.1 MGP_AJ_G0021157.1 mouse_genomes_project 14 38080521 38106913 - MGP_AJ_P0039001 Ddhd1 protein_coding nonsense_mediated_decay MGP_AJ_T0039002.1 MGP_AJ_G0021157.1 mouse_genomes_project 14 38080611 38147774 - MGP_AJ_P0039002 Ddhd1 protein_coding protein_coding MGP_AJ_T0039003.1 MGP_AJ_G0021157.1 mouse_genomes_project 14 38090211 38094566 - Ddhd1 protein_coding retained_intron MGP_AJ_T0039004.1 MGP_AJ_G0021157.1 mouse_genomes_project 14 38106838 38147033 - Ddhd1 protein_coding processed_transcript MGP_AJ_T0039005.1 MGP_AJ_G0021157.1 mouse_genomes_project 14 38114533 38147050 - Ddhd1 protein_coding retained_intron MGP_AJ_T0039255.1 MGP_AJ_G0021247.1 mouse_genomes_project 14 44893404 44922209 - MGP_AJ_P0039255 Hnrnpc protein_coding protein_coding MGP_AJ_T0039256.1 MGP_AJ_G0021247.1 mouse_genomes_project 14 44893404 44922209 - MGP_AJ_P0039256 Hnrnpc protein_coding protein_coding MGP_AJ_T0040049.1 MGP_AJ_G0021513.1 mouse_genomes_project 14 66393326 66409771 + Rcbtb2 protein_coding retained_intron MGP_AJ_T0040050.1 MGP_AJ_G0021513.1 mouse_genomes_project 14 66393326 66417822 + MGP_AJ_P0040050 Rcbtb2 protein_coding protein_coding MGP_AJ_T0040051.1 MGP_AJ_G0021513.1 mouse_genomes_project 14 66397094 66420204 + MGP_AJ_P0040051 Rcbtb2 protein_coding protein_coding MGP_AJ_T0040052.1 MGP_AJ_G0021513.1 mouse_genomes_project 14 66397116 66421979 + MGP_AJ_P0040052 Rcbtb2 protein_coding protein_coding MGP_AJ_T0040053.1 MGP_AJ_G0021513.1 mouse_genomes_project 14 66397265 66409770 + Rcbtb2 protein_coding retained_intron MGP_AJ_T0040054.1 MGP_AJ_G0021513.1 mouse_genomes_project 14 66397281 66417873 + MGP_AJ_P0040054 Rcbtb2 protein_coding protein_coding MGP_AJ_T0040055.1 MGP_AJ_G0021513.1 mouse_genomes_project 14 66397421 66456096 + MGP_AJ_P0040055 Rcbtb2 protein_coding protein_coding MGP_AJ_T0040056.1 MGP_AJ_G0021513.1 mouse_genomes_project 14 66397550 66420268 + MGP_AJ_P0040056 Rcbtb2 protein_coding protein_coding MGP_AJ_T0040057.1 MGP_AJ_G0021513.1 mouse_genomes_project 14 66397567 66419569 + Rcbtb2 protein_coding retained_intron MGP_AJ_T0040058.1 MGP_AJ_G0021513.1 mouse_genomes_project 14 66397575 66409350 + Rcbtb2 protein_coding retained_intron MGP_AJ_T0040059.1 MGP_AJ_G0021513.1 mouse_genomes_project 14 66397620 66439600 + MGP_AJ_P0040059 Rcbtb2 protein_coding protein_coding MGP_AJ_T0040060.1 MGP_AJ_G0021513.1 mouse_genomes_project 14 66397634 66438715 + MGP_AJ_P0040060 Rcbtb2 protein_coding protein_coding MGP_AJ_T0040061.1 MGP_AJ_G0021513.1 mouse_genomes_project 14 66397657 66439771 + MGP_AJ_P0040061 Rcbtb2 protein_coding protein_coding MGP_AJ_T0040062.1 MGP_AJ_G0021513.1 mouse_genomes_project 14 66397668 66409724 + Rcbtb2 protein_coding retained_intron MGP_AJ_T0040063.1 MGP_AJ_G0021513.1 mouse_genomes_project 14 66397668 66422312 + MGP_AJ_P0040063 Rcbtb2 protein_coding protein_coding MGP_AJ_T0040064.1 MGP_AJ_G0021513.1 mouse_genomes_project 14 66397715 66420335 + MGP_AJ_P0040064 Rcbtb2 protein_coding protein_coding MGP_AJ_T0040065.1 MGP_AJ_G0021513.1 mouse_genomes_project 14 66397958 66417454 + MGP_AJ_P0040065 Rcbtb2 protein_coding protein_coding MGP_AJ_T0040066.1 MGP_AJ_G0021513.1 mouse_genomes_project 14 66398187 66439613 + MGP_AJ_P0040066 Rcbtb2 protein_coding protein_coding MGP_AJ_T0040067.1 MGP_AJ_G0021513.1 mouse_genomes_project 14 66417424 66438155 + MGP_AJ_P0040067 Rcbtb2 protein_coding nonsense_mediated_decay MGP_AJ_T0040068.1 MGP_AJ_G0021513.1 mouse_genomes_project 14 66417424 66438152 + MGP_AJ_P0040068 Rcbtb2 protein_coding nonsense_mediated_decay MGP_AJ_T0040069.1 MGP_AJ_G0021513.1 mouse_genomes_project 14 66429355 66438071 + MGP_AJ_P0040069 Rcbtb2 protein_coding protein_coding MGP_AJ_T0040070.1 MGP_AJ_G0021513.1 mouse_genomes_project 14 66429922 66438235 + Rcbtb2 protein_coding retained_intron MGP_AJ_T0040303.1 MGP_AJ_G0021601.1 mouse_genomes_project 14 103977569 103984121 - MGP_AJ_P0040303 Slitrk6 protein_coding protein_coding MGP_AJ_T0100760.1 MGP_AJ_G0038726.1 mouse_genomes_project 14 19743898 19743996 - Gm25697 snoRNA snoRNA MGP_AJ_T0099517.1 MGP_AJ_G0037483.1 mouse_genomes_project 14 92598849 92599005 - Gm25130 snRNA snRNA MGP_AJ_T0009995.1 MGP_AJ_G0008117.1 mouse_genomes_project 14 56044042 56044152 + Mir6541 miRNA miRNA MGP_AJ_T0101726.1 MGP_AJ_G0039665.1 mouse_genomes_project 14 48058507 48062940 + transcribed_processed_pseudogene processed_transcript MGP_AJ_T0101727.1 MGP_AJ_G0039665.1 mouse_genomes_project 14 48061784 48062763 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0002651.1 MGP_AJ_G0002537.1 mouse_genomes_project 14 46823080 46823557 + MGP_AJ_P0002651 Trav17 TR_V_gene TR_V_gene MGP_AJ_T0002652.1 MGP_AJ_G0002537.1 mouse_genomes_project 14 46823080 46823557 + MGP_AJ_P0002652 Trav17 TR_V_gene TR_V_gene MGP_AJ_T0038437.1 MGP_AJ_G0021003.1 mouse_genomes_project 14 14191766 14199849 - MGP_AJ_P0038437 Dusp13 protein_coding protein_coding MGP_AJ_T0038438.1 MGP_AJ_G0021003.1 mouse_genomes_project 14 14191767 14198774 - MGP_AJ_P0038438 Dusp13 protein_coding protein_coding MGP_AJ_T0038439.1 MGP_AJ_G0021003.1 mouse_genomes_project 14 14191767 14206993 - MGP_AJ_P0038439 Dusp13 protein_coding nonsense_mediated_decay MGP_AJ_T0038440.1 MGP_AJ_G0021003.1 mouse_genomes_project 14 14191767 14206995 - MGP_AJ_P0038440 Dusp13 protein_coding protein_coding MGP_AJ_T0038441.1 MGP_AJ_G0021003.1 mouse_genomes_project 14 14191767 14201252 - MGP_AJ_P0038441 Dusp13 protein_coding protein_coding MGP_AJ_T0038442.1 MGP_AJ_G0021003.1 mouse_genomes_project 14 14191767 14199878 - MGP_AJ_P0038442 Dusp13 protein_coding protein_coding MGP_AJ_T0038443.1 MGP_AJ_G0021003.1 mouse_genomes_project 14 14191767 14199892 - MGP_AJ_P0038443 Dusp13 protein_coding protein_coding MGP_AJ_T0038444.1 MGP_AJ_G0021003.1 mouse_genomes_project 14 14191770 14207015 - MGP_AJ_P0038444 Dusp13 protein_coding nonsense_mediated_decay MGP_AJ_T0038445.1 MGP_AJ_G0021003.1 mouse_genomes_project 14 14191961 14206993 - MGP_AJ_P0038445 Dusp13 protein_coding nonsense_mediated_decay MGP_AJ_T0038446.1 MGP_AJ_G0021003.1 mouse_genomes_project 14 14192021 14206999 - MGP_AJ_P0038446 Dusp13 protein_coding protein_coding MGP_AJ_T0038447.1 MGP_AJ_G0021003.1 mouse_genomes_project 14 14198507 14206999 - Dusp13 protein_coding processed_transcript MGP_AJ_T0038448.1 MGP_AJ_G0021003.1 mouse_genomes_project 14 14198516 14204858 - MGP_AJ_P0038448 Dusp13 protein_coding protein_coding MGP_AJ_T0038449.1 MGP_AJ_G0021003.1 mouse_genomes_project 14 14201884 14207011 - MGP_AJ_P0038449 Dusp13 protein_coding nonsense_mediated_decay MGP_AJ_T0038450.1 MGP_AJ_G0021003.1 mouse_genomes_project 14 14203246 14209554 - Dusp13 protein_coding processed_transcript MGP_AJ_T0040031.1 MGP_AJ_G0021509.1 mouse_genomes_project 14 64027174 64034713 + Dok2 protein_coding processed_transcript MGP_AJ_T0040032.1 MGP_AJ_G0021509.1 mouse_genomes_project 14 64027187 64033280 + Dok2 protein_coding processed_transcript MGP_AJ_T0040033.1 MGP_AJ_G0021509.1 mouse_genomes_project 14 64034412 64037162 + Dok2 protein_coding processed_transcript MGP_AJ_T0040034.1 MGP_AJ_G0021509.1 mouse_genomes_project 14 64035456 64039630 + MGP_AJ_P0040034 Dok2 protein_coding protein_coding MGP_AJ_T0040035.1 MGP_AJ_G0021509.1 mouse_genomes_project 14 64037028 64038004 + Dok2 protein_coding retained_intron MGP_AJ_T0040036.1 MGP_AJ_G0021509.1 mouse_genomes_project 14 64037327 64038687 + Dok2 protein_coding processed_transcript MGP_AJ_T0040037.1 MGP_AJ_G0021509.1 mouse_genomes_project 14 64037512 64038696 + Dok2 protein_coding processed_transcript MGP_AJ_T0040038.1 MGP_AJ_G0021509.1 mouse_genomes_project 14 64037844 64038730 + Dok2 protein_coding retained_intron MGP_AJ_T0100778.1 MGP_AJ_G0038744.1 mouse_genomes_project 14 55694103 55694233 + Gm24625 snoRNA snoRNA MGP_AJ_T0006700.1 MGP_AJ_G0005531.1 mouse_genomes_project 14 44022635 44025725 + lincRNA lincRNA MGP_AJ_T0038536.1 MGP_AJ_G0021024.1 mouse_genomes_project 14 18417535 18430696 + protein_coding processed_transcript MGP_AJ_T0038538.1 MGP_AJ_G0021024.1 mouse_genomes_project 14 18418252 18432099 + MGP_AJ_P0038538 protein_coding protein_coding MGP_AJ_T0039722.1 MGP_AJ_G0021384.1 mouse_genomes_project 14 52614932 52724827 + MGP_AJ_P0039722 Cab39l protein_coding protein_coding MGP_AJ_T0039189.1 MGP_AJ_G0021227.1 mouse_genomes_project 14 43709367 43715910 + MGP_AJ_P0039189 protein_coding protein_coding MGP_AJ_T0039190.1 MGP_AJ_G0021227.1 mouse_genomes_project 14 43715308 43715746 + MGP_AJ_P0039190 protein_coding protein_coding MGP_AJ_T0039110.1 MGP_AJ_G0021181.1 mouse_genomes_project 14 41844388 42081270 - MGP_AJ_P0039110 Slc35f4 protein_coding protein_coding MGP_AJ_T0039111.1 MGP_AJ_G0021181.1 mouse_genomes_project 14 41844388 42081249 - MGP_AJ_P0039111 Slc35f4 protein_coding protein_coding MGP_AJ_T0039112.1 MGP_AJ_G0021181.1 mouse_genomes_project 14 41849976 41861177 - Slc35f4 protein_coding processed_transcript MGP_AJ_T0039113.1 MGP_AJ_G0021181.1 mouse_genomes_project 14 41859057 42081430 - MGP_AJ_P0039113 Slc35f4 protein_coding protein_coding MGP_AJ_T0039114.1 MGP_AJ_G0021181.1 mouse_genomes_project 14 41864027 42081237 - Slc35f4 protein_coding retained_intron MGP_AJ_T0038970.1 MGP_AJ_G0021146.1 mouse_genomes_project 14 33437665 33444515 + MGP_AJ_P0038970 Mbl1 protein_coding protein_coding MGP_AJ_T0039133.1 MGP_AJ_G0021196.1 mouse_genomes_project 14 42942808 42948568 + MGP_AJ_P0039133 Tlr11 protein_coding protein_coding MGP_AJ_T0039134.1 MGP_AJ_G0021196.1 mouse_genomes_project 14 42945406 42948399 + MGP_AJ_P0039134 Tlr11 protein_coding protein_coding MGP_AJ_T0039702.1 MGP_AJ_G0021380.1 mouse_genomes_project 14 52370814 52392824 + MGP_AJ_P0039702 Rcbtb1 protein_coding protein_coding MGP_AJ_T0039703.1 MGP_AJ_G0021380.1 mouse_genomes_project 14 52370833 52406812 + MGP_AJ_P0039703 Rcbtb1 protein_coding protein_coding MGP_AJ_T0039704.1 MGP_AJ_G0021380.1 mouse_genomes_project 14 52370839 52405139 + MGP_AJ_P0039704 Rcbtb1 protein_coding nonsense_mediated_decay MGP_AJ_T0039705.1 MGP_AJ_G0021380.1 mouse_genomes_project 14 52370847 52406812 + MGP_AJ_P0039705 Rcbtb1 protein_coding protein_coding MGP_AJ_T0039706.1 MGP_AJ_G0021380.1 mouse_genomes_project 14 52371081 52379577 + MGP_AJ_P0039706 Rcbtb1 protein_coding protein_coding MGP_AJ_T0039707.1 MGP_AJ_G0021380.1 mouse_genomes_project 14 52371088 52392136 + Rcbtb1 protein_coding processed_transcript MGP_AJ_T0039708.1 MGP_AJ_G0021380.1 mouse_genomes_project 14 52371108 52379673 + MGP_AJ_P0039708 Rcbtb1 protein_coding protein_coding MGP_AJ_T0039709.1 MGP_AJ_G0021380.1 mouse_genomes_project 14 52375218 52399575 + MGP_AJ_P0039709 Rcbtb1 protein_coding nonsense_mediated_decay MGP_AJ_T0039710.1 MGP_AJ_G0021380.1 mouse_genomes_project 14 52386042 52394333 + Rcbtb1 protein_coding processed_transcript MGP_AJ_T0039711.1 MGP_AJ_G0021380.1 mouse_genomes_project 14 52387214 52406806 + MGP_AJ_P0039711 Rcbtb1 protein_coding protein_coding MGP_AJ_T0039712.1 MGP_AJ_G0021380.1 mouse_genomes_project 14 52392197 52394294 + Rcbtb1 protein_coding retained_intron MGP_AJ_T0038451.1 MGP_AJ_G0021004.1 mouse_genomes_project 14 14208903 14251701 + MGP_AJ_P0038451 Samd8 protein_coding protein_coding MGP_AJ_T0038452.1 MGP_AJ_G0021004.1 mouse_genomes_project 14 14208920 14251701 + MGP_AJ_P0038452 Samd8 protein_coding nonsense_mediated_decay MGP_AJ_T0038453.1 MGP_AJ_G0021004.1 mouse_genomes_project 14 14209173 14251640 + MGP_AJ_P0038453 Samd8 protein_coding unknown_likely_coding MGP_AJ_T0038454.1 MGP_AJ_G0021004.1 mouse_genomes_project 14 14209924 14259214 + MGP_AJ_P0038454 Samd8 protein_coding protein_coding MGP_AJ_T0038455.1 MGP_AJ_G0021004.1 mouse_genomes_project 14 14250270 14251374 + Samd8 protein_coding retained_intron MGP_AJ_T0017400.1 MGP_AJ_G0015246.1 mouse_genomes_project 14 60464198 60464890 - Gm20675 processed_transcript processed_transcript MGP_AJ_T0100809.1 MGP_AJ_G0038775.1 mouse_genomes_project 14 103121007 103121137 - Gm25901 snoRNA snoRNA MGP_AJ_T0039385.1 MGP_AJ_G0021275.1 mouse_genomes_project 14 47626362 47630114 - MGP_AJ_P0039385 protein_coding protein_coding MGP_AJ_T0017404.1 MGP_AJ_G0015250.1 mouse_genomes_project 14 66429291 66442810 - Gm17233 processed_transcript processed_transcript MGP_AJ_T0039762.1 MGP_AJ_G0021399.1 mouse_genomes_project 14 54499317 54519811 - MGP_AJ_P0039762 Ebpl protein_coding protein_coding MGP_AJ_T0006703.1 MGP_AJ_G0005533.1 mouse_genomes_project 14 44804557 44810323 - lincRNA lincRNA MGP_AJ_T0100805.1 MGP_AJ_G0038771.1 mouse_genomes_project 14 98179241 98179375 + Gm24280 snoRNA snoRNA MGP_AJ_T0099523.1 MGP_AJ_G0037489.1 mouse_genomes_project 14 99455408 99455539 - Gm23459 snRNA snRNA MGP_AJ_T0039713.1 MGP_AJ_G0021381.1 mouse_genomes_project 14 52521783 52538354 - Phf11d protein_coding retained_intron MGP_AJ_T0039714.1 MGP_AJ_G0021381.1 mouse_genomes_project 14 52521949 52538324 - MGP_AJ_P0039714 Phf11d protein_coding protein_coding MGP_AJ_T0038905.1 MGP_AJ_G0021121.1 mouse_genomes_project 14 26655879 26660395 - MGP_AJ_P0038905 Sncg protein_coding protein_coding MGP_AJ_T0038286.1 MGP_AJ_G0020956.1 mouse_genomes_project 14 6693834 6699991 + MGP_AJ_P0038286 Olfr31 protein_coding protein_coding MGP_AJ_T0038287.1 MGP_AJ_G0020956.1 mouse_genomes_project 14 6699037 6699991 + MGP_AJ_P0038287 Olfr31 protein_coding protein_coding MGP_AJ_T0040193.1 MGP_AJ_G0021562.1 mouse_genomes_project 14 73138781 73144102 - MGP_AJ_P0040193 Gm10845 protein_coding protein_coding MGP_AJ_T0038721.1 MGP_AJ_G0021069.1 mouse_genomes_project 14 23424717 23445296 - MGP_AJ_P0038721 Nisch protein_coding protein_coding MGP_AJ_T0038722.1 MGP_AJ_G0021069.1 mouse_genomes_project 14 23424717 23460566 - MGP_AJ_P0038722 Nisch protein_coding protein_coding MGP_AJ_T0038723.1 MGP_AJ_G0021069.1 mouse_genomes_project 14 23425045 23440973 - MGP_AJ_P0038723 Nisch protein_coding protein_coding MGP_AJ_T0038724.1 MGP_AJ_G0021069.1 mouse_genomes_project 14 23425153 23428070 - MGP_AJ_P0038724 Nisch protein_coding protein_coding MGP_AJ_T0038725.1 MGP_AJ_G0021069.1 mouse_genomes_project 14 23425801 23427516 - MGP_AJ_P0038725 Nisch protein_coding protein_coding MGP_AJ_T0038726.1 MGP_AJ_G0021069.1 mouse_genomes_project 14 23428214 23430358 - MGP_AJ_P0038726 Nisch protein_coding protein_coding MGP_AJ_T0038727.1 MGP_AJ_G0021069.1 mouse_genomes_project 14 23430665 23457155 - MGP_AJ_P0038727 Nisch protein_coding protein_coding MGP_AJ_T0038728.1 MGP_AJ_G0021069.1 mouse_genomes_project 14 23430975 23435236 - MGP_AJ_P0038728 Nisch protein_coding protein_coding MGP_AJ_T0038729.1 MGP_AJ_G0021069.1 mouse_genomes_project 14 23431161 23439088 - MGP_AJ_P0038729 Nisch protein_coding nonsense_mediated_decay MGP_AJ_T0038730.1 MGP_AJ_G0021069.1 mouse_genomes_project 14 23431270 23446385 - Nisch protein_coding processed_transcript MGP_AJ_T0038731.1 MGP_AJ_G0021069.1 mouse_genomes_project 14 23431468 23439408 - Nisch protein_coding processed_transcript MGP_AJ_T0038732.1 MGP_AJ_G0021069.1 mouse_genomes_project 14 23434615 23436595 - Nisch protein_coding processed_transcript MGP_AJ_T0038733.1 MGP_AJ_G0021069.1 mouse_genomes_project 14 23437078 23460591 - MGP_AJ_P0038733 Nisch protein_coding protein_coding MGP_AJ_T0038734.1 MGP_AJ_G0021069.1 mouse_genomes_project 14 23437278 23438715 - Nisch protein_coding processed_transcript MGP_AJ_T0038735.1 MGP_AJ_G0021069.1 mouse_genomes_project 14 23438776 23445263 - MGP_AJ_P0038735 Nisch protein_coding protein_coding MGP_AJ_T0038736.1 MGP_AJ_G0021069.1 mouse_genomes_project 14 23439455 23460465 - MGP_AJ_P0038736 Nisch protein_coding protein_coding MGP_AJ_T0038737.1 MGP_AJ_G0021069.1 mouse_genomes_project 14 23439491 23460465 - MGP_AJ_P0038737 Nisch protein_coding nonsense_mediated_decay MGP_AJ_T0038738.1 MGP_AJ_G0021069.1 mouse_genomes_project 14 23440129 23441218 - Nisch protein_coding processed_transcript MGP_AJ_T0038739.1 MGP_AJ_G0021069.1 mouse_genomes_project 14 23440878 23457076 - MGP_AJ_P0038739 Nisch protein_coding nonsense_mediated_decay MGP_AJ_T0038740.1 MGP_AJ_G0021069.1 mouse_genomes_project 14 23442105 23444855 - Nisch protein_coding retained_intron MGP_AJ_T0038741.1 MGP_AJ_G0021069.1 mouse_genomes_project 14 23454708 23460465 - Nisch protein_coding processed_transcript MGP_AJ_T0038742.1 MGP_AJ_G0021069.1 mouse_genomes_project 14 23455630 23460466 - MGP_AJ_P0038742 Nisch protein_coding protein_coding MGP_AJ_T0038743.1 MGP_AJ_G0021069.1 mouse_genomes_project 14 23457070 23470631 - Nisch protein_coding processed_transcript MGP_AJ_T0039737.1 MGP_AJ_G0021390.1 mouse_genomes_project 14 53432606 53470519 + MGP_AJ_P0039737 Mtmr6 protein_coding protein_coding MGP_AJ_T0009993.1 MGP_AJ_G0008115.1 mouse_genomes_project 14 54800843 54800927 - Mir15a miRNA miRNA MGP_AJ_T0038672.1 MGP_AJ_G0021060.1 mouse_genomes_project 14 23182192 23196213 - MGP_AJ_P0038672 Itih1 protein_coding protein_coding MGP_AJ_T0038673.1 MGP_AJ_G0021060.1 mouse_genomes_project 14 23182192 23196201 - MGP_AJ_P0038673 Itih1 protein_coding protein_coding MGP_AJ_T0038674.1 MGP_AJ_G0021060.1 mouse_genomes_project 14 23195613 23196210 - Itih1 protein_coding retained_intron MGP_AJ_T0012977.1 MGP_AJ_G0011072.1 mouse_genomes_project 14 10393422 10394300 - processed_pseudogene processed_pseudogene MGP_AJ_T0039289.1 MGP_AJ_G0021251.1 mouse_genomes_project 14 45079086 45097205 - MGP_AJ_P0039289 Rab2b protein_coding protein_coding MGP_AJ_T0039290.1 MGP_AJ_G0021251.1 mouse_genomes_project 14 45079093 45096958 - MGP_AJ_P0039290 Rab2b protein_coding protein_coding MGP_AJ_T0039291.1 MGP_AJ_G0021251.1 mouse_genomes_project 14 45079096 45086221 - Rab2b protein_coding retained_intron MGP_AJ_T0039292.1 MGP_AJ_G0021251.1 mouse_genomes_project 14 45079098 45096999 - MGP_AJ_P0039292 Rab2b protein_coding protein_coding MGP_AJ_T0039293.1 MGP_AJ_G0021251.1 mouse_genomes_project 14 45081050 45095928 - Rab2b protein_coding processed_transcript MGP_AJ_T0039294.1 MGP_AJ_G0021251.1 mouse_genomes_project 14 45081050 45096901 - MGP_AJ_P0039294 Rab2b protein_coding nonsense_mediated_decay MGP_AJ_T0039295.1 MGP_AJ_G0021251.1 mouse_genomes_project 14 45081050 45096901 - MGP_AJ_P0039295 Rab2b protein_coding nonsense_mediated_decay MGP_AJ_T0039296.1 MGP_AJ_G0021251.1 mouse_genomes_project 14 45082090 45092466 - MGP_AJ_P0039296 Rab2b protein_coding nonsense_mediated_decay MGP_AJ_T0017428.1 MGP_AJ_G0015260.1 mouse_genomes_project 14 115333210 115336731 - A330035P11Rik processed_transcript processed_transcript MGP_AJ_T0017429.1 MGP_AJ_G0015260.1 mouse_genomes_project 14 115334153 115336752 - A330035P11Rik processed_transcript processed_transcript MGP_AJ_T0039653.1 MGP_AJ_G0021365.1 mouse_genomes_project 14 50278435 50289233 - MGP_AJ_P0039653 Gjb6 protein_coding protein_coding MGP_AJ_T0039654.1 MGP_AJ_G0021365.1 mouse_genomes_project 14 50279414 50288903 - MGP_AJ_P0039654 Gjb6 protein_coding protein_coding MGP_AJ_T0039655.1 MGP_AJ_G0021365.1 mouse_genomes_project 14 50285969 50287192 - Gjb6 protein_coding processed_transcript MGP_AJ_T0006732.1 MGP_AJ_G0005555.1 mouse_genomes_project 14 73112548 73235433 + Gm6999 lincRNA lincRNA MGP_AJ_T0006705.1 MGP_AJ_G0005535.1 mouse_genomes_project 14 47357899 47360049 - 5330426L24Rik lincRNA lincRNA MGP_AJ_T0017405.1 MGP_AJ_G0015251.1 mouse_genomes_project 14 69953688 69968590 + 1700108F19Rik processed_transcript lincRNA MGP_AJ_T0017406.1 MGP_AJ_G0015251.1 mouse_genomes_project 14 69958508 69968513 + 1700108F19Rik processed_transcript lincRNA MGP_AJ_T0017407.1 MGP_AJ_G0015251.1 mouse_genomes_project 14 69958521 69960757 + 1700108F19Rik processed_transcript retained_intron MGP_AJ_T0017408.1 MGP_AJ_G0015251.1 mouse_genomes_project 14 69958521 69968529 + 1700108F19Rik processed_transcript lincRNA MGP_AJ_T0017409.1 MGP_AJ_G0015251.1 mouse_genomes_project 14 69958549 69968516 + 1700108F19Rik processed_transcript lincRNA MGP_AJ_T0017410.1 MGP_AJ_G0015251.1 mouse_genomes_project 14 69958552 69961308 + 1700108F19Rik processed_transcript lincRNA MGP_AJ_T0017411.1 MGP_AJ_G0015251.1 mouse_genomes_project 14 69958596 69961308 + 1700108F19Rik processed_transcript lincRNA MGP_AJ_T0017412.1 MGP_AJ_G0015251.1 mouse_genomes_project 14 69963207 69968308 + 1700108F19Rik processed_transcript lincRNA MGP_AJ_T0039953.1 MGP_AJ_G0021479.1 mouse_genomes_project 14 62594716 62625597 + MGP_AJ_P0039953 protein_coding protein_coding MGP_AJ_T0039955.1 MGP_AJ_G0021479.1 mouse_genomes_project 14 62594732 62608539 + protein_coding retained_intron MGP_AJ_T0039956.1 MGP_AJ_G0021479.1 mouse_genomes_project 14 62594740 62608540 + MGP_AJ_P0039956 protein_coding protein_coding MGP_AJ_T0039957.1 MGP_AJ_G0021479.1 mouse_genomes_project 14 62594758 62605658 + protein_coding processed_transcript MGP_AJ_T0039959.1 MGP_AJ_G0021479.1 mouse_genomes_project 14 62620885 62624543 + protein_coding retained_intron MGP_AJ_T0006658.1 MGP_AJ_G0005503.1 mouse_genomes_project 14 974450 984279 + 4930455B14Rik lincRNA lincRNA MGP_AJ_T0006659.1 MGP_AJ_G0005503.1 mouse_genomes_project 14 974450 984221 + 4930455B14Rik lincRNA lincRNA MGP_AJ_T0101955.1 MGP_AJ_G0039796.1 mouse_genomes_project 14 62649589 62945333 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_AJ_T0013005.1 MGP_AJ_G0011100.1 mouse_genomes_project 14 43248644 43248927 - processed_pseudogene processed_pseudogene MGP_AJ_T0003570.1 MGP_AJ_G0003239.1 mouse_genomes_project 14 62514184 62517076 + Gm27222 antisense antisense MGP_AJ_T0003548.1 MGP_AJ_G0003222.1 mouse_genomes_project 14 47662984 47667104 + 4930579G18Rik antisense antisense MGP_AJ_T0038864.1 MGP_AJ_G0021103.1 mouse_genomes_project 14 25494600 25497581 + Arhgap22 protein_coding processed_transcript MGP_AJ_T0038865.1 MGP_AJ_G0021103.1 mouse_genomes_project 14 25494746 25649758 + MGP_AJ_P0038865 Arhgap22 protein_coding unknown_likely_coding MGP_AJ_T0038866.1 MGP_AJ_G0021103.1 mouse_genomes_project 14 25529485 25551053 + Arhgap22 protein_coding processed_transcript MGP_AJ_T0038867.1 MGP_AJ_G0021103.1 mouse_genomes_project 14 25585966 25649748 + Arhgap22 protein_coding processed_transcript MGP_AJ_T0038868.1 MGP_AJ_G0021103.1 mouse_genomes_project 14 25599510 25649750 + MGP_AJ_P0038868 Arhgap22 protein_coding protein_coding MGP_AJ_T0038869.1 MGP_AJ_G0021103.1 mouse_genomes_project 14 25631119 25642383 + Arhgap22 protein_coding processed_transcript MGP_AJ_T0038870.1 MGP_AJ_G0021103.1 mouse_genomes_project 14 25642104 25644284 + Arhgap22 protein_coding processed_transcript MGP_AJ_T0038871.1 MGP_AJ_G0021103.1 mouse_genomes_project 14 25642183 25643133 + Arhgap22 protein_coding processed_transcript MGP_AJ_T0038941.1 MGP_AJ_G0021132.1 mouse_genomes_project 14 29272093 29283782 - MGP_AJ_P0038941 Rgr protein_coding protein_coding MGP_AJ_T0017401.1 MGP_AJ_G0015247.1 mouse_genomes_project 14 60559373 60570400 - 1700120O09Rik processed_transcript processed_transcript MGP_AJ_T0039147.1 MGP_AJ_G0021208.1 mouse_genomes_project 14 43319823 43322164 + MGP_AJ_P0039147 protein_coding protein_coding MGP_AJ_T0039009.1 MGP_AJ_G0021159.1 mouse_genomes_project 14 38862240 38869377 - MGP_AJ_P0039009 Bmp4 protein_coding protein_coding MGP_AJ_T0039010.1 MGP_AJ_G0021159.1 mouse_genomes_project 14 38862426 38869258 - MGP_AJ_P0039010 Bmp4 protein_coding protein_coding MGP_AJ_T0039011.1 MGP_AJ_G0021159.1 mouse_genomes_project 14 38865713 38869243 - Bmp4 protein_coding retained_intron MGP_AJ_T0002545.1 MGP_AJ_G0002447.1 mouse_genomes_project 14 47222000 47222063 + MGP_AJ_P0002545 Traj17 TR_J_gene TR_J_gene MGP_AJ_T0099514.1 MGP_AJ_G0037480.1 mouse_genomes_project 14 91230368 91230531 - Gm25831 snRNA snRNA MGP_AJ_T0040313.1 MGP_AJ_G0021605.1 mouse_genomes_project 14 111169919 111209200 - MGP_AJ_P0040313 Dct protein_coding protein_coding MGP_AJ_T0006667.1 MGP_AJ_G0005509.1 mouse_genomes_project 14 17135428 17139554 + 4931403M11Rik lincRNA lincRNA MGP_AJ_T0100786.1 MGP_AJ_G0038752.1 mouse_genomes_project 14 69108074 69108204 + Snora31 snoRNA snoRNA MGP_AJ_T0009984.1 MGP_AJ_G0008106.1 mouse_genomes_project 14 42129030 42129135 - Gm22949 miRNA miRNA MGP_AJ_T0039198.1 MGP_AJ_G0021235.1 mouse_genomes_project 14 44508287 44512361 - MGP_AJ_P0039198 Gm5800 protein_coding protein_coding MGP_AJ_T0002640.1 MGP_AJ_G0002530.1 mouse_genomes_project 14 46284482 46285084 + MGP_AJ_P0002640 TR_V_gene TR_V_gene MGP_AJ_T0013014.1 MGP_AJ_G0011109.1 mouse_genomes_project 14 45843872 45844178 - processed_pseudogene processed_pseudogene MGP_AJ_T0002618.1 MGP_AJ_G0002512.1 mouse_genomes_project 14 45904658 45905190 + MGP_AJ_P0002618 TR_V_gene TR_V_gene MGP_AJ_T0010016.1 MGP_AJ_G0008138.1 mouse_genomes_project 14 104505949 104506038 + Gm22802 miRNA miRNA MGP_AJ_T0038544.1 MGP_AJ_G0021027.1 mouse_genomes_project 14 18455518 18465089 + MGP_AJ_P0038544 Duxbl3 protein_coding protein_coding MGP_AJ_T0038545.1 MGP_AJ_G0021027.1 mouse_genomes_project 14 18455836 18465280 + MGP_AJ_P0038545 Duxbl3 protein_coding protein_coding MGP_AJ_T0038547.1 MGP_AJ_G0021027.1 mouse_genomes_project 14 18456474 18463110 + MGP_AJ_P0038547 Duxbl3 protein_coding protein_coding MGP_AJ_T0038549.1 MGP_AJ_G0021027.1 mouse_genomes_project 14 18456808 18463848 + Duxbl3 protein_coding processed_transcript MGP_AJ_T0038551.1 MGP_AJ_G0021027.1 mouse_genomes_project 14 18459321 18466459 + MGP_AJ_P0038551 Duxbl3 protein_coding protein_coding MGP_AJ_T0039515.1 MGP_AJ_G0021310.1 mouse_genomes_project 14 48624542 48627766 + MGP_AJ_P0039515 Psme1 protein_coding protein_coding MGP_AJ_T0039516.1 MGP_AJ_G0021310.1 mouse_genomes_project 14 48624779 48627948 + MGP_AJ_P0039516 Psme1 protein_coding protein_coding MGP_AJ_T0039517.1 MGP_AJ_G0021310.1 mouse_genomes_project 14 48624824 48627062 + Psme1 protein_coding retained_intron MGP_AJ_T0039518.1 MGP_AJ_G0021310.1 mouse_genomes_project 14 48624875 48627948 + Psme1 protein_coding retained_intron MGP_AJ_T0039519.1 MGP_AJ_G0021310.1 mouse_genomes_project 14 48624887 48627794 + Psme1 protein_coding retained_intron MGP_AJ_T0039520.1 MGP_AJ_G0021310.1 mouse_genomes_project 14 48624905 48626823 + Psme1 protein_coding retained_intron MGP_AJ_T0039521.1 MGP_AJ_G0021310.1 mouse_genomes_project 14 48624957 48627362 + MGP_AJ_P0039521 Psme1 protein_coding protein_coding MGP_AJ_T0039522.1 MGP_AJ_G0021310.1 mouse_genomes_project 14 48624994 48627801 + MGP_AJ_P0039522 Psme1 protein_coding protein_coding MGP_AJ_T0039523.1 MGP_AJ_G0021310.1 mouse_genomes_project 14 48624994 48627801 + MGP_AJ_P0039523 Psme1 protein_coding protein_coding MGP_AJ_T0039524.1 MGP_AJ_G0021310.1 mouse_genomes_project 14 48626383 48627871 + Psme1 protein_coding retained_intron MGP_AJ_T0039525.1 MGP_AJ_G0021310.1 mouse_genomes_project 14 48626453 48627367 + Psme1 protein_coding retained_intron MGP_AJ_T0039526.1 MGP_AJ_G0021310.1 mouse_genomes_project 14 48627167 48627949 + MGP_AJ_P0039526 Psme1 protein_coding nonsense_mediated_decay MGP_AJ_T0038369.1 MGP_AJ_G0020982.1 mouse_genomes_project 14 12835095 12840119 - MGP_AJ_P0038369 Dnajc9 protein_coding protein_coding MGP_AJ_T0012978.1 MGP_AJ_G0011073.1 mouse_genomes_project 14 10832901 10833999 + processed_pseudogene processed_pseudogene MGP_AJ_T0040318.1 MGP_AJ_G0021610.1 mouse_genomes_project 14 111645671 111879923 - MGP_AJ_P0040318 Abcc4 protein_coding protein_coding MGP_AJ_T0040319.1 MGP_AJ_G0021610.1 mouse_genomes_project 14 111645671 111879923 - MGP_AJ_P0040319 Abcc4 protein_coding protein_coding MGP_AJ_T0099502.1 MGP_AJ_G0037468.1 mouse_genomes_project 14 49942717 49942776 - Gm22218 snRNA snRNA MGP_AJ_T0040286.1 MGP_AJ_G0021594.1 mouse_genomes_project 14 98316937 98340603 - MGP_AJ_P0040286 Rbm26 protein_coding protein_coding MGP_AJ_T0040287.1 MGP_AJ_G0021594.1 mouse_genomes_project 14 98325151 98392524 - MGP_AJ_P0040287 Rbm26 protein_coding protein_coding MGP_AJ_T0040288.1 MGP_AJ_G0021594.1 mouse_genomes_project 14 98325172 98392987 - MGP_AJ_P0040288 Rbm26 protein_coding protein_coding MGP_AJ_T0040289.1 MGP_AJ_G0021594.1 mouse_genomes_project 14 98325249 98392991 - MGP_AJ_P0040289 Rbm26 protein_coding protein_coding MGP_AJ_T0040290.1 MGP_AJ_G0021594.1 mouse_genomes_project 14 98326260 98392928 - MGP_AJ_P0040290 Rbm26 protein_coding protein_coding MGP_AJ_T0006729.1 MGP_AJ_G0005553.1 mouse_genomes_project 14 69789718 69795938 - 4930444M15Rik lincRNA lincRNA MGP_AJ_T0002508.1 MGP_AJ_G0002412.1 mouse_genomes_project 14 47179450 47179513 + MGP_AJ_P0002508 Traj56 TR_J_gene TR_J_gene MGP_AJ_T0038365.1 MGP_AJ_G0020981.1 mouse_genomes_project 14 12798548 12818936 + MGP_AJ_P0038365 Fam149b protein_coding protein_coding MGP_AJ_T0038366.1 MGP_AJ_G0020981.1 mouse_genomes_project 14 12798548 12833947 + MGP_AJ_P0038366 Fam149b protein_coding protein_coding MGP_AJ_T0038367.1 MGP_AJ_G0020981.1 mouse_genomes_project 14 12798548 12833947 + MGP_AJ_P0038367 Fam149b protein_coding protein_coding MGP_AJ_T0038368.1 MGP_AJ_G0020981.1 mouse_genomes_project 14 12798608 12833947 + MGP_AJ_P0038368 Fam149b protein_coding protein_coding MGP_AJ_T0009994.1 MGP_AJ_G0008116.1 mouse_genomes_project 14 56014045 56014182 + Mir8098 miRNA miRNA MGP_AJ_T0100782.1 MGP_AJ_G0038748.1 mouse_genomes_project 14 60184148 60184281 + Gm24258 snoRNA snoRNA MGP_AJ_T0002604.1 MGP_AJ_G0002498.1 mouse_genomes_project 14 45634902 45635412 + MGP_AJ_P0002604 TR_V_gene TR_V_gene MGP_AJ_T0039656.1 MGP_AJ_G0021366.1 mouse_genomes_project 14 50434685 50559159 - MGP_AJ_P0039656 Cryl1 protein_coding protein_coding MGP_AJ_T0098589.1 MGP_AJ_G0036573.1 mouse_genomes_project 14 71588973 71589088 - Gm26197 rRNA rRNA MGP_AJ_T0039766.1 MGP_AJ_G0021402.1 mouse_genomes_project 14 54775294 54779710 + MGP_AJ_P0039766 Kcnrg protein_coding protein_coding MGP_AJ_T0039527.1 MGP_AJ_G0021311.1 mouse_genomes_project 14 48627935 48632784 - MGP_AJ_P0039527 Emc9 protein_coding protein_coding MGP_AJ_T0039528.1 MGP_AJ_G0021311.1 mouse_genomes_project 14 48627940 48628844 - Emc9 protein_coding retained_intron MGP_AJ_T0039529.1 MGP_AJ_G0021311.1 mouse_genomes_project 14 48627941 48633140 - MGP_AJ_P0039529 Emc9 protein_coding protein_coding MGP_AJ_T0039530.1 MGP_AJ_G0021311.1 mouse_genomes_project 14 48631211 48633049 - Emc9 protein_coding retained_intron MGP_AJ_T0038350.1 MGP_AJ_G0020972.1 mouse_genomes_project 14 11806705 11810054 - MGP_AJ_P0038350 Gm9637 protein_coding protein_coding MGP_AJ_T0039348.1 MGP_AJ_G0021265.1 mouse_genomes_project 14 47369257 47372797 + Oxa1l protein_coding retained_intron MGP_AJ_T0039349.1 MGP_AJ_G0021265.1 mouse_genomes_project 14 47369257 47379167 + MGP_AJ_P0039349 Oxa1l protein_coding protein_coding MGP_AJ_T0039350.1 MGP_AJ_G0021265.1 mouse_genomes_project 14 47369461 47376529 + Oxa1l protein_coding retained_intron MGP_AJ_T0003512.1 MGP_AJ_G0003196.1 mouse_genomes_project 14 4283673 4299818 - Gm3848 antisense antisense MGP_AJ_T0003513.1 MGP_AJ_G0003196.1 mouse_genomes_project 14 4298792 4299803 - Gm3848 antisense antisense MGP_AJ_T0102338.1 MGP_AJ_G0040080.1 mouse_genomes_project 14 43715308 43715741 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0040172.1 MGP_AJ_G0021553.1 mouse_genomes_project 14 72601885 72610903 - Naa16 protein_coding retained_intron MGP_AJ_T0040173.1 MGP_AJ_G0021553.1 mouse_genomes_project 14 72602188 72660076 - MGP_AJ_P0040173 Naa16 protein_coding protein_coding MGP_AJ_T0040174.1 MGP_AJ_G0021553.1 mouse_genomes_project 14 72608682 72654641 - MGP_AJ_P0040174 Naa16 protein_coding nonsense_mediated_decay MGP_AJ_T0040175.1 MGP_AJ_G0021553.1 mouse_genomes_project 14 72636676 72659990 - MGP_AJ_P0040175 Naa16 protein_coding nonsense_mediated_decay MGP_AJ_T0040176.1 MGP_AJ_G0021553.1 mouse_genomes_project 14 72652139 72659988 - Naa16 protein_coding retained_intron MGP_AJ_T0002549.1 MGP_AJ_G0002451.1 mouse_genomes_project 14 47226789 47226847 + MGP_AJ_P0002549 Traj12 TR_J_gene TR_J_gene MGP_AJ_T0100798.1 MGP_AJ_G0038764.1 mouse_genomes_project 14 90602213 90602351 - Gm23276 snoRNA snoRNA MGP_AJ_T0039652.1 MGP_AJ_G0021364.1 mouse_genomes_project 14 50266843 50270221 - MGP_AJ_P0039652 Gm4491 protein_coding protein_coding MGP_AJ_T0038926.1 MGP_AJ_G0021128.1 mouse_genomes_project 14 27106303 27846393 + MGP_AJ_P0038926 Grid1 protein_coding protein_coding MGP_AJ_T0038927.1 MGP_AJ_G0021128.1 mouse_genomes_project 14 27833009 27844132 + Grid1 protein_coding processed_transcript MGP_AJ_T0013025.1 MGP_AJ_G0011120.1 mouse_genomes_project 14 53311608 53311956 + processed_pseudogene processed_pseudogene MGP_AJ_T0038530.1 MGP_AJ_G0021022.1 mouse_genomes_project 14 18399949 18403386 - MGP_AJ_P0038530 protein_coding protein_coding MGP_AJ_T0038531.1 MGP_AJ_G0021022.1 mouse_genomes_project 14 18399953 18402992 - MGP_AJ_P0038531 protein_coding protein_coding MGP_AJ_T0003554.1 MGP_AJ_G0003227.1 mouse_genomes_project 14 48613374 48622411 - Gm15932 antisense antisense MGP_AJ_T0098586.1 MGP_AJ_G0036570.1 mouse_genomes_project 14 67202904 67203010 - Gm22164 rRNA rRNA MGP_AJ_T0039715.1 MGP_AJ_G0021382.1 mouse_genomes_project 14 52554124 52569410 - MGP_AJ_P0039715 Phf11c protein_coding protein_coding MGP_AJ_T0039716.1 MGP_AJ_G0021382.1 mouse_genomes_project 14 52554275 52567157 - MGP_AJ_P0039716 Phf11c protein_coding unknown_likely_coding MGP_AJ_T0039484.1 MGP_AJ_G0021304.1 mouse_genomes_project 14 48555745 48562728 + MGP_AJ_P0039484 Cpne6 protein_coding protein_coding MGP_AJ_T0039485.1 MGP_AJ_G0021304.1 mouse_genomes_project 14 48555748 48562728 + MGP_AJ_P0039485 Cpne6 protein_coding protein_coding MGP_AJ_T0039486.1 MGP_AJ_G0021304.1 mouse_genomes_project 14 48555775 48562727 + Cpne6 protein_coding retained_intron MGP_AJ_T0039487.1 MGP_AJ_G0021304.1 mouse_genomes_project 14 48555897 48558989 + MGP_AJ_P0039487 Cpne6 protein_coding nonsense_mediated_decay MGP_AJ_T0039488.1 MGP_AJ_G0021304.1 mouse_genomes_project 14 48556611 48562728 + Cpne6 protein_coding retained_intron MGP_AJ_T0039489.1 MGP_AJ_G0021304.1 mouse_genomes_project 14 48556660 48562728 + MGP_AJ_P0039489 Cpne6 protein_coding protein_coding MGP_AJ_T0039490.1 MGP_AJ_G0021304.1 mouse_genomes_project 14 48557285 48562726 + MGP_AJ_P0039490 Cpne6 protein_coding protein_coding MGP_AJ_T0002573.1 MGP_AJ_G0002473.1 mouse_genomes_project 14 47175226 47175297 + TR_J_pseudogene TR_J_pseudogene MGP_AJ_T0040119.1 MGP_AJ_G0021530.1 mouse_genomes_project 14 68901496 68926324 + MGP_AJ_P0040119 Erich6b protein_coding protein_coding MGP_AJ_T0098582.1 MGP_AJ_G0036566.1 mouse_genomes_project 14 21249229 21249333 - Gm23999 rRNA rRNA MGP_AJ_T0099499.1 MGP_AJ_G0037465.1 mouse_genomes_project 14 47593485 47593734 + Gm24705 snRNA snRNA MGP_AJ_T0038529.1 MGP_AJ_G0021021.1 mouse_genomes_project 14 18399783 18403456 - MGP_AJ_P0038529 protein_coding protein_coding MGP_AJ_T0038532.1 MGP_AJ_G0021021.1 mouse_genomes_project 14 18399953 18403034 - MGP_AJ_P0038532 protein_coding protein_coding MGP_AJ_T0038533.1 MGP_AJ_G0021021.1 mouse_genomes_project 14 18400533 18403427 - MGP_AJ_P0038533 protein_coding nonsense_mediated_decay MGP_AJ_T0038534.1 MGP_AJ_G0021021.1 mouse_genomes_project 14 18400540 18401572 - protein_coding retained_intron MGP_AJ_T0010012.1 MGP_AJ_G0008134.1 mouse_genomes_project 14 96186385 96186469 - Mir5130 miRNA miRNA MGP_AJ_T0002596.1 MGP_AJ_G0002492.1 mouse_genomes_project 14 45467786 45468303 + MGP_AJ_P0002596 Trav5-1 TR_V_gene TR_V_gene MGP_AJ_T0011378.1 MGP_AJ_G0009500.1 mouse_genomes_project 14 58425718 58425794 - Gm27263 misc_RNA misc_RNA MGP_AJ_T0002555.1 MGP_AJ_G0002457.1 mouse_genomes_project 14 47236558 47236621 + MGP_AJ_P0002555 Traj4 TR_J_gene TR_J_gene MGP_AJ_T0013045.1 MGP_AJ_G0011140.1 mouse_genomes_project 14 93466993 93467298 + processed_pseudogene processed_pseudogene MGP_AJ_T0002534.1 MGP_AJ_G0002436.1 mouse_genomes_project 14 47211880 47211945 + MGP_AJ_P0002534 Traj28 TR_J_gene TR_J_gene MGP_AJ_T0038409.1 MGP_AJ_G0020997.1 mouse_genomes_project 14 13292156 13298877 + MGP_AJ_P0038409 Plau protein_coding protein_coding MGP_AJ_T0002722.1 MGP_AJ_G0002594.1 mouse_genomes_project 14 47021902 47022205 + TR_V_pseudogene TR_V_pseudogene MGP_AJ_T0038928.1 MGP_AJ_G0021129.1 mouse_genomes_project 14 28058421 28060952 - MGP_AJ_P0038928 4930596D02Rik protein_coding protein_coding MGP_AJ_T0003568.1 MGP_AJ_G0003237.1 mouse_genomes_project 14 60539413 60549221 - Gm6878 antisense antisense MGP_AJ_T0002536.1 MGP_AJ_G0002438.1 mouse_genomes_project 14 47214690 47214750 + MGP_AJ_P0002536 Traj26 TR_J_gene TR_J_gene MGP_AJ_T0039616.1 MGP_AJ_G0021337.1 mouse_genomes_project 14 48991814 48994725 - MGP_AJ_P0039616 Cma1 protein_coding protein_coding MGP_AJ_T0002639.1 MGP_AJ_G0002529.1 mouse_genomes_project 14 46278987 46279629 + MGP_AJ_P0002639 Trav8n-2 TR_V_gene TR_V_gene MGP_AJ_T0013010.1 MGP_AJ_G0011105.1 mouse_genomes_project 14 45353553 45354121 - processed_pseudogene processed_pseudogene MGP_AJ_T0009974.1 MGP_AJ_G0008096.1 mouse_genomes_project 14 18006637 18006722 + Mir3075 miRNA miRNA MGP_AJ_T0003559.1 MGP_AJ_G0003230.1 mouse_genomes_project 14 50670933 50675025 - Ift88os antisense antisense MGP_AJ_T0017417.1 MGP_AJ_G0015254.1 mouse_genomes_project 14 98319576 98324863 - Gm17066 processed_transcript processed_transcript MGP_AJ_T0017418.1 MGP_AJ_G0015254.1 mouse_genomes_project 14 98319595 98324648 - Gm17066 processed_transcript processed_transcript MGP_AJ_T0039168.1 MGP_AJ_G0021218.1 mouse_genomes_project 14 43543350 43546973 - MGP_AJ_P0039168 Tmem55b protein_coding protein_coding MGP_AJ_T0039169.1 MGP_AJ_G0021218.1 mouse_genomes_project 14 43543355 43546994 - MGP_AJ_P0039169 Tmem55b protein_coding protein_coding MGP_AJ_T0039170.1 MGP_AJ_G0021218.1 mouse_genomes_project 14 43543357 43546989 - Tmem55b protein_coding retained_intron MGP_AJ_T0039171.1 MGP_AJ_G0021218.1 mouse_genomes_project 14 43544006 43545350 - MGP_AJ_P0039171 Tmem55b protein_coding protein_coding MGP_AJ_T0039172.1 MGP_AJ_G0021218.1 mouse_genomes_project 14 43544966 43546941 - MGP_AJ_P0039172 Tmem55b protein_coding protein_coding MGP_AJ_T0039173.1 MGP_AJ_G0021218.1 mouse_genomes_project 14 43545062 43546971 - Tmem55b protein_coding retained_intron MGP_AJ_T0039174.1 MGP_AJ_G0021218.1 mouse_genomes_project 14 43545164 43545904 - Tmem55b protein_coding retained_intron MGP_AJ_T0039175.1 MGP_AJ_G0021218.1 mouse_genomes_project 14 43545398 43546976 - Tmem55b protein_coding retained_intron MGP_AJ_T0039176.1 MGP_AJ_G0021218.1 mouse_genomes_project 14 43545475 43546938 - Tmem55b protein_coding retained_intron MGP_AJ_T0038991.1 MGP_AJ_G0021156.1 mouse_genomes_project 14 37942649 38014392 - MGP_AJ_P0038991 Fermt2 protein_coding protein_coding MGP_AJ_T0038992.1 MGP_AJ_G0021156.1 mouse_genomes_project 14 37953174 37961914 - MGP_AJ_P0038992 Fermt2 protein_coding protein_coding MGP_AJ_T0038993.1 MGP_AJ_G0021156.1 mouse_genomes_project 14 37959950 38014238 - MGP_AJ_P0038993 Fermt2 protein_coding protein_coding MGP_AJ_T0038994.1 MGP_AJ_G0021156.1 mouse_genomes_project 14 37988541 38014060 - Fermt2 protein_coding processed_transcript MGP_AJ_T0039386.1 MGP_AJ_G0021276.1 mouse_genomes_project 14 47637998 47642160 + MGP_AJ_P0039386 Psmb11 protein_coding protein_coding MGP_AJ_T0039897.1 MGP_AJ_G0021455.1 mouse_genomes_project 14 59848258 59949138 + MGP_AJ_P0039897 Adra1a protein_coding protein_coding MGP_AJ_T0039898.1 MGP_AJ_G0021455.1 mouse_genomes_project 14 59848265 59949002 + MGP_AJ_P0039898 Adra1a protein_coding protein_coding MGP_AJ_T0039899.1 MGP_AJ_G0021455.1 mouse_genomes_project 14 59848316 59853341 + Adra1a protein_coding retained_intron MGP_AJ_T0039900.1 MGP_AJ_G0021455.1 mouse_genomes_project 14 59848348 59945658 + MGP_AJ_P0039900 Adra1a protein_coding protein_coding MGP_AJ_T0039901.1 MGP_AJ_G0021455.1 mouse_genomes_project 14 59848563 59948414 + MGP_AJ_P0039901 Adra1a protein_coding protein_coding MGP_AJ_T0039429.1 MGP_AJ_G0021287.1 mouse_genomes_project 14 47900363 47916368 + MGP_AJ_P0039429 Gm20521 protein_coding protein_coding MGP_AJ_T0038271.1 MGP_AJ_G0020949.1 mouse_genomes_project 14 5624679 5961892 + MGP_AJ_P0038271 Synpr protein_coding protein_coding MGP_AJ_T0038272.1 MGP_AJ_G0020949.1 mouse_genomes_project 14 5794532 5908481 + MGP_AJ_P0038272 Synpr protein_coding protein_coding MGP_AJ_T0038273.1 MGP_AJ_G0020949.1 mouse_genomes_project 14 5794558 5912185 + Synpr protein_coding retained_intron MGP_AJ_T0038274.1 MGP_AJ_G0020949.1 mouse_genomes_project 14 5794631 5961892 + MGP_AJ_P0038274 Synpr protein_coding protein_coding MGP_AJ_T0038275.1 MGP_AJ_G0020949.1 mouse_genomes_project 14 5794645 5956937 + Synpr protein_coding retained_intron MGP_AJ_T0098584.1 MGP_AJ_G0036568.1 mouse_genomes_project 14 56051395 56051514 + n-R5s47 rRNA rRNA MGP_AJ_T0012985.1 MGP_AJ_G0011080.1 mouse_genomes_project 14 18282808 18283055 - processed_pseudogene processed_pseudogene MGP_AJ_T0009972.1 MGP_AJ_G0008094.1 mouse_genomes_project 14 14484686 14484799 - Gm27532 miRNA miRNA MGP_AJ_T0040017.1 MGP_AJ_G0021502.1 mouse_genomes_project 14 63822149 63824658 + Hr protein_coding processed_transcript MGP_AJ_T0040018.1 MGP_AJ_G0021502.1 mouse_genomes_project 14 63822182 63824604 + Hr protein_coding processed_transcript MGP_AJ_T0040019.1 MGP_AJ_G0021502.1 mouse_genomes_project 14 63823624 63842098 + MGP_AJ_P0040019 Hr protein_coding protein_coding MGP_AJ_T0040020.1 MGP_AJ_G0021502.1 mouse_genomes_project 14 63823993 63842746 + MGP_AJ_P0040020 Hr protein_coding protein_coding MGP_AJ_T0040021.1 MGP_AJ_G0021502.1 mouse_genomes_project 14 63825838 63842742 + MGP_AJ_P0040021 Hr protein_coding protein_coding MGP_AJ_T0039582.1 MGP_AJ_G0021318.1 mouse_genomes_project 14 48699904 48702262 + MGP_AJ_P0039582 Tssk4 protein_coding protein_coding MGP_AJ_T0039583.1 MGP_AJ_G0021318.1 mouse_genomes_project 14 48699906 48702262 + MGP_AJ_P0039583 Tssk4 protein_coding protein_coding MGP_AJ_T0039584.1 MGP_AJ_G0021318.1 mouse_genomes_project 14 48700071 48702171 + MGP_AJ_P0039584 Tssk4 protein_coding unknown_likely_coding MGP_AJ_T0013039.1 MGP_AJ_G0011134.1 mouse_genomes_project 14 91952722 91953662 + processed_pseudogene processed_pseudogene MGP_AJ_T0017376.1 MGP_AJ_G0015241.1 mouse_genomes_project 14 14309530 14312987 + A430057M04Rik processed_transcript processed_transcript MGP_AJ_T0017377.1 MGP_AJ_G0015241.1 mouse_genomes_project 14 14310399 14318879 + A430057M04Rik processed_transcript processed_transcript MGP_AJ_T0039626.1 MGP_AJ_G0021347.1 mouse_genomes_project 14 49257359 49266146 - MGP_AJ_P0039626 Gzmn protein_coding protein_coding MGP_AJ_T0006692.1 MGP_AJ_G0005527.1 mouse_genomes_project 14 39312149 39315310 - Gm10101 lincRNA lincRNA MGP_AJ_T0006693.1 MGP_AJ_G0005527.1 mouse_genomes_project 14 39312154 39315310 - Gm10101 lincRNA lincRNA MGP_AJ_T0102335.1 MGP_AJ_G0040077.1 mouse_genomes_project 14 37377931 37380331 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0012988.1 MGP_AJ_G0011083.1 mouse_genomes_project 14 18415163 18416385 - processed_pseudogene processed_pseudogene MGP_AJ_T0002655.1 MGP_AJ_G0002539.1 mouse_genomes_project 14 46870814 46871408 + MGP_AJ_P0002655 Trav19 TR_V_gene TR_V_gene MGP_AJ_T0038488.1 MGP_AJ_G0021010.1 mouse_genomes_project 14 16598522 16642289 - MGP_AJ_P0038488 Dlg5 protein_coding protein_coding MGP_AJ_T0038489.1 MGP_AJ_G0021010.1 mouse_genomes_project 14 16598522 16610758 - MGP_AJ_P0038489 Dlg5 protein_coding protein_coding MGP_AJ_T0038490.1 MGP_AJ_G0021010.1 mouse_genomes_project 14 16598522 16714135 - MGP_AJ_P0038490 Dlg5 protein_coding protein_coding MGP_AJ_T0038491.1 MGP_AJ_G0021010.1 mouse_genomes_project 14 16598524 16714135 - MGP_AJ_P0038491 Dlg5 protein_coding protein_coding MGP_AJ_T0038492.1 MGP_AJ_G0021010.1 mouse_genomes_project 14 16608953 16615088 - MGP_AJ_P0038492 Dlg5 protein_coding nonsense_mediated_decay MGP_AJ_T0038493.1 MGP_AJ_G0021010.1 mouse_genomes_project 14 16610850 16613334 - Dlg5 protein_coding retained_intron MGP_AJ_T0038494.1 MGP_AJ_G0021010.1 mouse_genomes_project 14 16618849 16621796 - Dlg5 protein_coding retained_intron MGP_AJ_T0038495.1 MGP_AJ_G0021010.1 mouse_genomes_project 14 16654655 16713080 - MGP_AJ_P0038495 Dlg5 protein_coding protein_coding MGP_AJ_T0038984.1 MGP_AJ_G0021151.1 mouse_genomes_project 14 37681680 37685880 + Gpr137c protein_coding processed_transcript MGP_AJ_T0038985.1 MGP_AJ_G0021151.1 mouse_genomes_project 14 37681954 37744555 + MGP_AJ_P0038985 Gpr137c protein_coding protein_coding MGP_AJ_T0038986.1 MGP_AJ_G0021151.1 mouse_genomes_project 14 37728521 37742578 + Gpr137c protein_coding retained_intron MGP_AJ_T0099506.1 MGP_AJ_G0037472.1 mouse_genomes_project 14 65397712 65397846 + Gm23735 snRNA snRNA MGP_AJ_T0039053.1 MGP_AJ_G0021172.1 mouse_genomes_project 14 40047591 40076383 - MGP_AJ_P0039053 Atg14 protein_coding protein_coding MGP_AJ_T0040183.1 MGP_AJ_G0021559.1 mouse_genomes_project 14 72866361 72910604 + MGP_AJ_P0040183 Sugt1 protein_coding protein_coding MGP_AJ_T0039748.1 MGP_AJ_G0021393.1 mouse_genomes_project 14 53923823 53936519 + MGP_AJ_P0039748 C1qtnf9 protein_coding protein_coding MGP_AJ_T0010004.1 MGP_AJ_G0008126.1 mouse_genomes_project 14 63712283 63712365 + Mir320 miRNA miRNA MGP_AJ_T0010022.1 MGP_AJ_G0008144.1 mouse_genomes_project 14 108247290 108247370 + Mir92-1 miRNA miRNA MGP_AJ_T0039622.1 MGP_AJ_G0021343.1 mouse_genomes_project 14 49179633 49182327 - MGP_AJ_P0039622 Ctsg protein_coding protein_coding MGP_AJ_T0038351.1 MGP_AJ_G0020973.1 mouse_genomes_project 14 12178616 12239035 + MGP_AJ_P0038351 Nid2 protein_coding protein_coding MGP_AJ_T0038352.1 MGP_AJ_G0020973.1 mouse_genomes_project 14 12178757 12239042 + MGP_AJ_P0038352 Nid2 protein_coding unknown_likely_coding MGP_AJ_T0002601.1 MGP_AJ_G0002496.1 mouse_genomes_project 14 45597122 45597714 + MGP_AJ_P0002601 Trav7d-3 TR_V_gene TR_V_gene MGP_AJ_T0039389.1 MGP_AJ_G0021279.1 mouse_genomes_project 14 47653465 47660769 + MGP_AJ_P0039389 Gm17606 protein_coding protein_coding MGP_AJ_T0011376.1 MGP_AJ_G0009498.1 mouse_genomes_project 14 54817451 54817588 + Gm27972 misc_RNA misc_RNA MGP_AJ_T0039903.1 MGP_AJ_G0021457.1 mouse_genomes_project 14 60019809 60087594 - MGP_AJ_P0039903 Dpysl2 protein_coding protein_coding MGP_AJ_T0010003.1 MGP_AJ_G0008125.1 mouse_genomes_project 14 63566008 63566094 - Gm44340 miRNA miRNA MGP_AJ_T0039768.1 MGP_AJ_G0021404.1 mouse_genomes_project 14 55463925 55524935 + MGP_AJ_P0039768 Rnaseh2b protein_coding protein_coding MGP_AJ_T0039769.1 MGP_AJ_G0021404.1 mouse_genomes_project 14 55503375 55544979 + MGP_AJ_P0039769 Rnaseh2b protein_coding protein_coding MGP_AJ_T0039770.1 MGP_AJ_G0021404.1 mouse_genomes_project 14 55503432 55536203 + MGP_AJ_P0039770 Rnaseh2b protein_coding nonsense_mediated_decay MGP_AJ_T0039771.1 MGP_AJ_G0021404.1 mouse_genomes_project 14 55518594 55526704 + Rnaseh2b protein_coding retained_intron MGP_AJ_T0099488.1 MGP_AJ_G0037454.1 mouse_genomes_project 14 32294373 32294537 + Gm25012 snRNA snRNA MGP_AJ_T0039449.1 MGP_AJ_G0021294.1 mouse_genomes_project 14 47990124 48013707 - MGP_AJ_P0039449 Myh7 protein_coding protein_coding MGP_AJ_T0039450.1 MGP_AJ_G0021294.1 mouse_genomes_project 14 47990201 48013699 - MGP_AJ_P0039450 Myh7 protein_coding protein_coding MGP_AJ_T0039452.1 MGP_AJ_G0021294.1 mouse_genomes_project 14 48000106 48006335 - Myh7 protein_coding retained_intron MGP_AJ_T0039453.1 MGP_AJ_G0021294.1 mouse_genomes_project 14 48011788 48013621 - MGP_AJ_P0039453 Myh7 protein_coding protein_coding MGP_AJ_T0013030.1 MGP_AJ_G0011125.1 mouse_genomes_project 14 67981798 67995531 + processed_pseudogene processed_pseudogene MGP_AJ_T0009979.1 MGP_AJ_G0008101.1 mouse_genomes_project 14 27182410 27182508 + Mir346 miRNA miRNA MGP_AJ_T0100804.1 MGP_AJ_G0038770.1 mouse_genomes_project 14 97824567 97824684 - Gm25724 snoRNA snoRNA MGP_AJ_T0039888.1 MGP_AJ_G0021454.1 mouse_genomes_project 14 59567953 59580417 + MGP_AJ_P0039888 Stmn4 protein_coding protein_coding MGP_AJ_T0039889.1 MGP_AJ_G0021454.1 mouse_genomes_project 14 59567961 59585341 + MGP_AJ_P0039889 Stmn4 protein_coding protein_coding MGP_AJ_T0039890.1 MGP_AJ_G0021454.1 mouse_genomes_project 14 59568024 59579514 + Stmn4 protein_coding retained_intron MGP_AJ_T0039891.1 MGP_AJ_G0021454.1 mouse_genomes_project 14 59568024 59579303 + Stmn4 protein_coding processed_transcript MGP_AJ_T0039892.1 MGP_AJ_G0021454.1 mouse_genomes_project 14 59568030 59585335 + MGP_AJ_P0039892 Stmn4 protein_coding protein_coding MGP_AJ_T0039893.1 MGP_AJ_G0021454.1 mouse_genomes_project 14 59568031 59585335 + MGP_AJ_P0039893 Stmn4 protein_coding protein_coding MGP_AJ_T0039894.1 MGP_AJ_G0021454.1 mouse_genomes_project 14 59568032 59585309 + MGP_AJ_P0039894 Stmn4 protein_coding protein_coding MGP_AJ_T0039895.1 MGP_AJ_G0021454.1 mouse_genomes_project 14 59568035 59580422 + MGP_AJ_P0039895 Stmn4 protein_coding protein_coding MGP_AJ_T0039896.1 MGP_AJ_G0021454.1 mouse_genomes_project 14 59568038 59581763 + Stmn4 protein_coding retained_intron MGP_AJ_T0009997.1 MGP_AJ_G0008119.1 mouse_genomes_project 14 57801538 57801623 + Mir124a-1 miRNA miRNA MGP_AJ_T0040401.1 MGP_AJ_G0021639.1 mouse_genomes_project 14 117190958 117922999 - MGP_AJ_P0040401 Fgf14 protein_coding protein_coding MGP_AJ_T0040402.1 MGP_AJ_G0021639.1 mouse_genomes_project 14 117191342 117413965 - MGP_AJ_P0040402 Fgf14 protein_coding protein_coding MGP_AJ_T0006660.1 MGP_AJ_G0005504.1 mouse_genomes_project 14 5603629 5624530 - lincRNA lincRNA MGP_AJ_T0039845.1 MGP_AJ_G0021436.1 mouse_genomes_project 14 58419850 58482168 - MGP_AJ_P0039845 Fzd3 protein_coding protein_coding MGP_AJ_T0039846.1 MGP_AJ_G0021436.1 mouse_genomes_project 14 58428665 58447440 - Fzd3 protein_coding processed_transcript MGP_AJ_T0003552.1 MGP_AJ_G0003225.1 mouse_genomes_project 14 48074336 48092829 + Gm20687 antisense antisense MGP_AJ_T0038411.1 MGP_AJ_G0020999.1 mouse_genomes_project 14 13489419 13510414 - MGP_AJ_P0038411 Ap3m1 protein_coding protein_coding MGP_AJ_T0038412.1 MGP_AJ_G0020999.1 mouse_genomes_project 14 13489436 13492544 - Ap3m1 protein_coding processed_transcript MGP_AJ_T0038413.1 MGP_AJ_G0020999.1 mouse_genomes_project 14 13489511 13492758 - Ap3m1 protein_coding processed_transcript MGP_AJ_T0038414.1 MGP_AJ_G0020999.1 mouse_genomes_project 14 13493991 13510186 - MGP_AJ_P0038414 Ap3m1 protein_coding protein_coding MGP_AJ_T0038415.1 MGP_AJ_G0020999.1 mouse_genomes_project 14 13496108 13510151 - MGP_AJ_P0038415 Ap3m1 protein_coding nonsense_mediated_decay MGP_AJ_T0038416.1 MGP_AJ_G0020999.1 mouse_genomes_project 14 13496152 13510427 - Ap3m1 protein_coding processed_transcript MGP_AJ_T0038417.1 MGP_AJ_G0020999.1 mouse_genomes_project 14 13498951 13510041 - Ap3m1 protein_coding processed_transcript MGP_AJ_T0038418.1 MGP_AJ_G0020999.1 mouse_genomes_project 14 13498978 13510472 - MGP_AJ_P0038418 Ap3m1 protein_coding protein_coding MGP_AJ_T0038419.1 MGP_AJ_G0020999.1 mouse_genomes_project 14 13502617 13510084 - MGP_AJ_P0038419 Ap3m1 protein_coding protein_coding MGP_AJ_T0006711.1 MGP_AJ_G0005540.1 mouse_genomes_project 14 53636095 53750965 + Gm29266 lincRNA lincRNA MGP_AJ_T0002593.1 MGP_AJ_G0002490.1 mouse_genomes_project 14 45412830 45413684 + MGP_AJ_P0002593 Trav2 TR_V_gene TR_V_gene MGP_AJ_T0002594.1 MGP_AJ_G0002490.1 mouse_genomes_project 14 45412925 45413684 + MGP_AJ_P0002594 Trav2 TR_V_gene TR_V_gene MGP_AJ_T0006671.1 MGP_AJ_G0005512.1 mouse_genomes_project 14 17828356 17851017 - Gm26660 lincRNA lincRNA MGP_AJ_T0039031.1 MGP_AJ_G0021166.1 mouse_genomes_project 14 39738421 39773838 - MGP_AJ_P0039031 Wdhd1 protein_coding protein_coding MGP_AJ_T0039032.1 MGP_AJ_G0021166.1 mouse_genomes_project 14 39738421 39773796 - MGP_AJ_P0039032 Wdhd1 protein_coding protein_coding MGP_AJ_T0039033.1 MGP_AJ_G0021166.1 mouse_genomes_project 14 39738422 39773863 - MGP_AJ_P0039033 Wdhd1 protein_coding protein_coding MGP_AJ_T0039034.1 MGP_AJ_G0021166.1 mouse_genomes_project 14 39755201 39773838 - MGP_AJ_P0039034 Wdhd1 protein_coding protein_coding MGP_AJ_T0039035.1 MGP_AJ_G0021166.1 mouse_genomes_project 14 39769466 39773813 - Wdhd1 protein_coding retained_intron MGP_AJ_T0002627.1 MGP_AJ_G0002520.1 mouse_genomes_project 14 46016645 46017204 + MGP_AJ_P0002627 Trav12-1 TR_V_gene TR_V_gene MGP_AJ_T0100764.1 MGP_AJ_G0038730.1 mouse_genomes_project 14 24455547 24455744 - Gm23946 snoRNA snoRNA MGP_AJ_T0039843.1 MGP_AJ_G0021434.1 mouse_genomes_project 14 58166964 58262005 + MGP_AJ_P0039843 Ints9 protein_coding protein_coding MGP_AJ_T0002556.1 MGP_AJ_G0002458.1 mouse_genomes_project 14 47237562 47237628 + MGP_AJ_P0002556 Traj3 TR_J_gene TR_J_gene MGP_AJ_T0038887.1 MGP_AJ_G0021111.1 mouse_genomes_project 14 26312754 26318649 + MGP_AJ_P0038887 Gm5460 protein_coding protein_coding MGP_AJ_T0040022.1 MGP_AJ_G0021503.1 mouse_genomes_project 14 63847069 63851793 + MGP_AJ_P0040022 Nudt18 protein_coding protein_coding MGP_AJ_T0013001.1 MGP_AJ_G0011096.1 mouse_genomes_project 14 38348140 38348574 - processed_pseudogene processed_pseudogene MGP_AJ_T0039586.1 MGP_AJ_G0021320.1 mouse_genomes_project 14 48711951 48721560 - MGP_AJ_P0039586 Nedd8 protein_coding protein_coding MGP_AJ_T0039587.1 MGP_AJ_G0021320.1 mouse_genomes_project 14 48711953 48721593 - MGP_AJ_P0039587 Nedd8 protein_coding protein_coding MGP_AJ_T0038502.1 MGP_AJ_G0021012.1 mouse_genomes_project 14 16959635 16997925 - MGP_AJ_P0038502 Polr3a protein_coding protein_coding MGP_AJ_T0038305.1 MGP_AJ_G0020963.1 mouse_genomes_project 14 8612856 8677954 + MGP_AJ_P0038305 Ngly1 protein_coding protein_coding MGP_AJ_T0038306.1 MGP_AJ_G0020963.1 mouse_genomes_project 14 8612903 8646475 + Ngly1 protein_coding retained_intron MGP_AJ_T0038307.1 MGP_AJ_G0020963.1 mouse_genomes_project 14 8644149 8646598 + Ngly1 protein_coding retained_intron MGP_AJ_T0099494.1 MGP_AJ_G0037460.1 mouse_genomes_project 14 42075469 42075608 - Gm22116 snRNA snRNA MGP_AJ_T0013035.1 MGP_AJ_G0011130.1 mouse_genomes_project 14 73616564 73617317 - processed_pseudogene processed_pseudogene MGP_AJ_T0040314.1 MGP_AJ_G0021606.1 mouse_genomes_project 14 111270523 111291380 - MGP_AJ_P0040314 Tgds protein_coding protein_coding MGP_AJ_T0038611.1 MGP_AJ_G0021048.1 mouse_genomes_project 14 22229416 22242086 - MGP_AJ_P0038611 Il17rb protein_coding nonsense_mediated_decay MGP_AJ_T0038612.1 MGP_AJ_G0021048.1 mouse_genomes_project 14 22229443 22242169 - MGP_AJ_P0038612 Il17rb protein_coding protein_coding MGP_AJ_T0038613.1 MGP_AJ_G0021048.1 mouse_genomes_project 14 22229443 22242169 - MGP_AJ_P0038613 Il17rb protein_coding protein_coding MGP_AJ_T0038614.1 MGP_AJ_G0021048.1 mouse_genomes_project 14 22229474 22242082 - MGP_AJ_P0038614 Il17rb protein_coding nonsense_mediated_decay MGP_AJ_T0038615.1 MGP_AJ_G0021048.1 mouse_genomes_project 14 22229899 22242064 - MGP_AJ_P0038615 Il17rb protein_coding unknown_likely_coding MGP_AJ_T0039922.1 MGP_AJ_G0021463.1 mouse_genomes_project 14 60918832 60959067 - MGP_AJ_P0039922 Cdca2 protein_coding protein_coding MGP_AJ_T0039923.1 MGP_AJ_G0021463.1 mouse_genomes_project 14 60918856 60958836 - MGP_AJ_P0039923 Cdca2 protein_coding protein_coding MGP_AJ_T0039924.1 MGP_AJ_G0021463.1 mouse_genomes_project 14 60920297 60939947 - MGP_AJ_P0039924 Cdca2 protein_coding protein_coding MGP_AJ_T0039925.1 MGP_AJ_G0021463.1 mouse_genomes_project 14 60922804 60958836 - MGP_AJ_P0039925 Cdca2 protein_coding protein_coding MGP_AJ_T0039926.1 MGP_AJ_G0021463.1 mouse_genomes_project 14 60937313 60941194 - MGP_AJ_P0039926 Cdca2 protein_coding nonsense_mediated_decay MGP_AJ_T0039927.1 MGP_AJ_G0021463.1 mouse_genomes_project 14 60942148 60958601 - Cdca2 protein_coding retained_intron MGP_AJ_T0039928.1 MGP_AJ_G0021463.1 mouse_genomes_project 14 60943484 60958907 - MGP_AJ_P0039928 Cdca2 protein_coding protein_coding MGP_AJ_T0100776.1 MGP_AJ_G0038742.1 mouse_genomes_project 14 50493778 50493898 - Gm23593 snoRNA snoRNA MGP_AJ_T0039864.1 MGP_AJ_G0021446.1 mouse_genomes_project 14 59143562 59177868 - MGP_AJ_P0039864 Scara3 protein_coding protein_coding MGP_AJ_T0038543.1 MGP_AJ_G0021026.1 mouse_genomes_project 14 18455012 18459824 + protein_coding processed_transcript MGP_AJ_T0038548.1 MGP_AJ_G0021026.1 mouse_genomes_project 14 18456808 18463846 + protein_coding processed_transcript MGP_AJ_T0038552.1 MGP_AJ_G0021026.1 mouse_genomes_project 14 18459321 18466515 + MGP_AJ_P0038552 protein_coding protein_coding MGP_AJ_T0012986.1 MGP_AJ_G0011081.1 mouse_genomes_project 14 18415158 18416347 - processed_pseudogene processed_pseudogene MGP_AJ_T0039822.1 MGP_AJ_G0021427.1 mouse_genomes_project 14 57204854 57247337 + MGP_AJ_P0039822 Rp1l1 protein_coding protein_coding MGP_AJ_T0040015.1 MGP_AJ_G0021500.1 mouse_genomes_project 14 63800142 63808218 + MGP_AJ_P0040015 Lgi3 protein_coding protein_coding MGP_AJ_T0100765.1 MGP_AJ_G0038731.1 mouse_genomes_project 14 25487805 25487934 + Gm25498 snoRNA snoRNA MGP_AJ_T0099510.1 MGP_AJ_G0037476.1 mouse_genomes_project 14 79690531 79690671 + Gm25115 snRNA snRNA MGP_AJ_T0010025.1 MGP_AJ_G0008147.1 mouse_genomes_project 14 111755449 111755553 - Mir6391 miRNA miRNA MGP_AJ_T0100797.1 MGP_AJ_G0038763.1 mouse_genomes_project 14 90242752 90242844 + Gm24770 snoRNA snoRNA MGP_AJ_T0040112.1 MGP_AJ_G0021527.1 mouse_genomes_project 14 68540581 68600666 + MGP_AJ_P0040112 Zc3h13 protein_coding protein_coding MGP_AJ_T0040113.1 MGP_AJ_G0021527.1 mouse_genomes_project 14 68547787 68600674 + MGP_AJ_P0040113 Zc3h13 protein_coding unknown_likely_coding MGP_AJ_T0038904.1 MGP_AJ_G0021120.1 mouse_genomes_project 14 26637404 26640957 - MGP_AJ_P0038904 Fam25c protein_coding protein_coding MGP_AJ_T0039340.1 MGP_AJ_G0021263.1 mouse_genomes_project 14 47275209 47288834 + MGP_AJ_P0039340 Abhd4 protein_coding protein_coding MGP_AJ_T0039341.1 MGP_AJ_G0021263.1 mouse_genomes_project 14 47275211 47290052 + MGP_AJ_P0039341 Abhd4 protein_coding protein_coding MGP_AJ_T0039342.1 MGP_AJ_G0021263.1 mouse_genomes_project 14 47280307 47284195 + Abhd4 protein_coding retained_intron MGP_AJ_T0039343.1 MGP_AJ_G0021263.1 mouse_genomes_project 14 47280313 47284354 + MGP_AJ_P0039343 Abhd4 protein_coding nonsense_mediated_decay MGP_AJ_T0039344.1 MGP_AJ_G0021263.1 mouse_genomes_project 14 47280341 47284357 + MGP_AJ_P0039344 Abhd4 protein_coding protein_coding MGP_AJ_T0039345.1 MGP_AJ_G0021263.1 mouse_genomes_project 14 47284009 47291389 + MGP_AJ_P0039345 Abhd4 protein_coding protein_coding MGP_AJ_T0039346.1 MGP_AJ_G0021263.1 mouse_genomes_project 14 47284314 47288831 + MGP_AJ_P0039346 Abhd4 protein_coding nonsense_mediated_decay MGP_AJ_T0011370.1 MGP_AJ_G0009492.1 mouse_genomes_project 14 32604167 32604346 - Gm22726 misc_RNA misc_RNA MGP_AJ_T0006679.1 MGP_AJ_G0005515.1 mouse_genomes_project 14 18589015 18596675 + Slmapos2 lincRNA lincRNA MGP_AJ_T0099525.1 MGP_AJ_G0037491.1 mouse_genomes_project 14 103961413 103961516 + Gm26255 snRNA snRNA MGP_AJ_T0100758.1 MGP_AJ_G0038724.1 mouse_genomes_project 14 12652079 12652196 - Gm24912 snoRNA snoRNA MGP_AJ_T0039758.1 MGP_AJ_G0021397.1 mouse_genomes_project 14 54379789 54419456 - MGP_AJ_P0039758 Sgcg protein_coding protein_coding MGP_AJ_T0039759.1 MGP_AJ_G0021397.1 mouse_genomes_project 14 54380174 54419390 - MGP_AJ_P0039759 Sgcg protein_coding protein_coding MGP_AJ_T0039760.1 MGP_AJ_G0021397.1 mouse_genomes_project 14 54381546 54391183 - MGP_AJ_P0039760 Sgcg protein_coding protein_coding MGP_AJ_T0099512.1 MGP_AJ_G0037478.1 mouse_genomes_project 14 86423964 86424126 - Gm23509 snRNA snRNA MGP_AJ_T0039186.1 MGP_AJ_G0021226.1 mouse_genomes_project 14 43704152 43719965 + MGP_AJ_P0039186 Rnase4 protein_coding protein_coding MGP_AJ_T0039188.1 MGP_AJ_G0021226.1 mouse_genomes_project 14 43708976 43719965 + MGP_AJ_P0039188 Rnase4 protein_coding protein_coding MGP_AJ_T0039657.1 MGP_AJ_G0021367.1 mouse_genomes_project 14 50586474 50682126 + MGP_AJ_P0039657 Ift88 protein_coding protein_coding MGP_AJ_T0039658.1 MGP_AJ_G0021367.1 mouse_genomes_project 14 50586492 50602040 + MGP_AJ_P0039658 Ift88 protein_coding nonsense_mediated_decay MGP_AJ_T0039659.1 MGP_AJ_G0021367.1 mouse_genomes_project 14 50586518 50682126 + Ift88 protein_coding retained_intron MGP_AJ_T0039660.1 MGP_AJ_G0021367.1 mouse_genomes_project 14 50606705 50642106 + MGP_AJ_P0039660 Ift88 protein_coding nonsense_mediated_decay MGP_AJ_T0039661.1 MGP_AJ_G0021367.1 mouse_genomes_project 14 50643782 50651773 + Ift88 protein_coding retained_intron MGP_AJ_T0039320.1 MGP_AJ_G0021255.1 mouse_genomes_project 14 45165652 45166594 - MGP_AJ_P0039320 Olfr1513 protein_coding protein_coding MGP_AJ_T0003555.1 MGP_AJ_G0003228.1 mouse_genomes_project 14 49692344 49705550 - Gm16573 antisense antisense MGP_AJ_T0003556.1 MGP_AJ_G0003228.1 mouse_genomes_project 14 49695871 49705566 - Gm16573 antisense antisense MGP_AJ_T0003557.1 MGP_AJ_G0003228.1 mouse_genomes_project 14 49702597 49705566 - Gm16573 antisense antisense MGP_AJ_T0002637.1 MGP_AJ_G0002528.1 mouse_genomes_project 14 46251127 46251614 + MGP_AJ_P0002637 TR_V_gene TR_V_gene MGP_AJ_T0038851.1 MGP_AJ_G0021099.1 mouse_genomes_project 14 25105473 25108301 + MGP_AJ_P0038851 Fam170b protein_coding protein_coding MGP_AJ_T0040197.1 MGP_AJ_G0021565.1 mouse_genomes_project 14 79947371 80452821 - MGP_AJ_P0040197 Diaph3 protein_coding protein_coding MGP_AJ_T0040198.1 MGP_AJ_G0021565.1 mouse_genomes_project 14 79948286 80452711 - MGP_AJ_P0040198 Diaph3 protein_coding protein_coding MGP_AJ_T0039181.1 MGP_AJ_G0021221.1 mouse_genomes_project 14 43639160 43642573 - MGP_AJ_P0039181 Rnase9 protein_coding protein_coding MGP_AJ_T0006724.1 MGP_AJ_G0005549.1 mouse_genomes_project 14 62988917 63002674 + 4930480K23Rik lincRNA lincRNA MGP_AJ_T0006725.1 MGP_AJ_G0005549.1 mouse_genomes_project 14 62988967 63018635 + 4930480K23Rik lincRNA lincRNA MGP_AJ_T0010005.1 MGP_AJ_G0008127.1 mouse_genomes_project 14 66455015 66455104 - Mir687 miRNA miRNA MGP_AJ_T0040014.1 MGP_AJ_G0021499.1 mouse_genomes_project 14 63790262 63793403 - MGP_AJ_P0040014 Sftpc protein_coding protein_coding MGP_AJ_T0010011.1 MGP_AJ_G0008133.1 mouse_genomes_project 14 93916522 93916639 + Gm22401 miRNA miRNA MGP_AJ_T0039942.1 MGP_AJ_G0021471.1 mouse_genomes_project 14 61854924 61906531 - MGP_AJ_P0039942 Adam28 protein_coding protein_coding MGP_AJ_T0039943.1 MGP_AJ_G0021471.1 mouse_genomes_project 14 61855776 61906531 - MGP_AJ_P0039943 Adam28 protein_coding protein_coding MGP_AJ_T0039972.1 MGP_AJ_G0021484.1 mouse_genomes_project 14 63019181 63035895 + MGP_AJ_P0039972 unknown_likely_coding unknown_likely_coding MGP_AJ_T0040100.1 MGP_AJ_G0021525.1 mouse_genomes_project 14 68382460 68451873 + MGP_AJ_P0040100 Lcp1 protein_coding protein_coding MGP_AJ_T0040101.1 MGP_AJ_G0021525.1 mouse_genomes_project 14 68382518 68399436 + Lcp1 protein_coding processed_transcript MGP_AJ_T0040102.1 MGP_AJ_G0021525.1 mouse_genomes_project 14 68382518 68452943 + MGP_AJ_P0040102 Lcp1 protein_coding protein_coding MGP_AJ_T0040103.1 MGP_AJ_G0021525.1 mouse_genomes_project 14 68382858 68452892 + MGP_AJ_P0040103 Lcp1 protein_coding protein_coding MGP_AJ_T0040104.1 MGP_AJ_G0021525.1 mouse_genomes_project 14 68382913 68482213 + MGP_AJ_P0040104 Lcp1 protein_coding protein_coding MGP_AJ_T0040105.1 MGP_AJ_G0021525.1 mouse_genomes_project 14 68387687 68483259 + MGP_AJ_P0040105 Lcp1 protein_coding protein_coding MGP_AJ_T0040106.1 MGP_AJ_G0021525.1 mouse_genomes_project 14 68387830 68452883 + MGP_AJ_P0040106 Lcp1 protein_coding protein_coding MGP_AJ_T0040107.1 MGP_AJ_G0021525.1 mouse_genomes_project 14 68427379 68430456 + Lcp1 protein_coding retained_intron MGP_AJ_T0040108.1 MGP_AJ_G0021525.1 mouse_genomes_project 14 68428640 68450571 + Lcp1 protein_coding processed_transcript MGP_AJ_T0040109.1 MGP_AJ_G0021525.1 mouse_genomes_project 14 68442757 68483233 + MGP_AJ_P0040109 Lcp1 protein_coding protein_coding MGP_AJ_T0040110.1 MGP_AJ_G0021525.1 mouse_genomes_project 14 68450328 68451795 + Lcp1 protein_coding processed_transcript MGP_AJ_T0002630.1 MGP_AJ_G0002523.1 mouse_genomes_project 14 46036137 46036634 + MGP_AJ_P0002630 TR_V_gene TR_V_gene MGP_AJ_T0102331.1 MGP_AJ_G0040073.1 mouse_genomes_project 14 18352793 18360434 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0040365.1 MGP_AJ_G0021630.1 mouse_genomes_project 14 115671981 115688877 - MGP_AJ_P0040365 Gm5089 protein_coding protein_coding MGP_AJ_T0040111.1 MGP_AJ_G0021526.1 mouse_genomes_project 14 68495609 68539760 + MGP_AJ_P0040111 Cpb2 protein_coding protein_coding MGP_AJ_T0098583.1 MGP_AJ_G0036567.1 mouse_genomes_project 14 29088129 29088245 - n-R5s46 rRNA rRNA MGP_AJ_T0038872.1 MGP_AJ_G0021104.1 mouse_genomes_project 14 25657705 25727463 - MGP_AJ_P0038872 Mapk8 protein_coding protein_coding MGP_AJ_T0038873.1 MGP_AJ_G0021104.1 mouse_genomes_project 14 25660856 25727450 - MGP_AJ_P0038873 Mapk8 protein_coding protein_coding MGP_AJ_T0038874.1 MGP_AJ_G0021104.1 mouse_genomes_project 14 25661912 25727447 - MGP_AJ_P0038874 Mapk8 protein_coding protein_coding MGP_AJ_T0038875.1 MGP_AJ_G0021104.1 mouse_genomes_project 14 25661977 25691011 - MGP_AJ_P0038875 Mapk8 protein_coding protein_coding MGP_AJ_T0038876.1 MGP_AJ_G0021104.1 mouse_genomes_project 14 25662112 25669969 - Mapk8 protein_coding processed_transcript MGP_AJ_T0038877.1 MGP_AJ_G0021104.1 mouse_genomes_project 14 25662115 25690994 - MGP_AJ_P0038877 Mapk8 protein_coding protein_coding MGP_AJ_T0038878.1 MGP_AJ_G0021104.1 mouse_genomes_project 14 25663583 25668889 - Mapk8 protein_coding retained_intron MGP_AJ_T0038879.1 MGP_AJ_G0021104.1 mouse_genomes_project 14 25670598 25727463 - Mapk8 protein_coding retained_intron MGP_AJ_T0038880.1 MGP_AJ_G0021104.1 mouse_genomes_project 14 25687079 25727462 - Mapk8 protein_coding retained_intron MGP_AJ_T0002518.1 MGP_AJ_G0002420.1 mouse_genomes_project 14 47193182 47193245 + MGP_AJ_P0002518 Traj45 TR_J_gene TR_J_gene MGP_AJ_T0038362.1 MGP_AJ_G0020978.1 mouse_genomes_project 14 12716234 12723056 - MGP_AJ_P0038362 Kcnk16 protein_coding protein_coding MGP_AJ_T0100770.1 MGP_AJ_G0038736.1 mouse_genomes_project 14 44889290 44889360 + Gm22354 snoRNA snoRNA MGP_AJ_T0038844.1 MGP_AJ_G0021095.1 mouse_genomes_project 14 24781609 24845153 + MGP_AJ_P0038844 Ercc6 protein_coding unknown_likely_coding MGP_AJ_T0039182.1 MGP_AJ_G0021222.1 mouse_genomes_project 14 43650961 43651674 - MGP_AJ_P0039182 Rnase11 protein_coding protein_coding MGP_AJ_T0099524.1 MGP_AJ_G0037490.1 mouse_genomes_project 14 103663530 103663637 - Gm23242 snRNA snRNA MGP_AJ_T0039650.1 MGP_AJ_G0021362.1 mouse_genomes_project 14 50188903 50211313 - MGP_AJ_P0039650 Gja3 protein_coding protein_coding MGP_AJ_T0038517.1 MGP_AJ_G0021017.1 mouse_genomes_project 14 18317343 18363745 + MGP_AJ_P0038517 Anxa11 protein_coding protein_coding MGP_AJ_T0038518.1 MGP_AJ_G0021017.1 mouse_genomes_project 14 18317370 18363745 + Anxa11 protein_coding retained_intron MGP_AJ_T0038519.1 MGP_AJ_G0021017.1 mouse_genomes_project 14 18317370 18355266 + Anxa11 protein_coding retained_intron MGP_AJ_T0038520.1 MGP_AJ_G0021017.1 mouse_genomes_project 14 18317370 18355659 + MGP_AJ_P0038520 Anxa11 protein_coding protein_coding MGP_AJ_T0009977.1 MGP_AJ_G0008099.1 mouse_genomes_project 14 22222163 22222228 + Mir6947 miRNA miRNA MGP_AJ_T0003558.1 MGP_AJ_G0003229.1 mouse_genomes_project 14 49898717 49903965 + 2410022M11Rik antisense antisense MGP_AJ_T0040320.1 MGP_AJ_G0021611.1 mouse_genomes_project 14 111957771 112042294 + MGP_AJ_P0040320 Cldn10 protein_coding protein_coding MGP_AJ_T0040321.1 MGP_AJ_G0021611.1 mouse_genomes_project 14 111957781 112042295 + MGP_AJ_P0040321 Cldn10 protein_coding protein_coding MGP_AJ_T0040322.1 MGP_AJ_G0021611.1 mouse_genomes_project 14 112022613 112043261 + MGP_AJ_P0040322 Cldn10 protein_coding protein_coding MGP_AJ_T0039860.1 MGP_AJ_G0021444.1 mouse_genomes_project 14 59041120 59056011 - MGP_AJ_P0039860 Esco2 protein_coding protein_coding MGP_AJ_T0039861.1 MGP_AJ_G0021444.1 mouse_genomes_project 14 59048094 59049290 - Esco2 protein_coding processed_transcript MGP_AJ_T0039862.1 MGP_AJ_G0021444.1 mouse_genomes_project 14 59049043 59050962 - Esco2 protein_coding processed_transcript MGP_AJ_T0039481.1 MGP_AJ_G0021302.1 mouse_genomes_project 14 48522438 48535632 + MGP_AJ_P0039481 Dhrs4 protein_coding protein_coding MGP_AJ_T0010006.1 MGP_AJ_G0008128.1 mouse_genomes_project 14 68516047 68516150 + Gm44482 miRNA miRNA MGP_AJ_T0099487.1 MGP_AJ_G0037453.1 mouse_genomes_project 14 28993796 28993902 + Gm25204 snRNA snRNA MGP_AJ_T0040180.1 MGP_AJ_G0021557.1 mouse_genomes_project 14 72730694 72753811 - MGP_AJ_P0040180 Wbp4 protein_coding protein_coding MGP_AJ_T0038884.1 MGP_AJ_G0021108.1 mouse_genomes_project 14 26218114 26224272 + MGP_AJ_P0038884 Gdf2 protein_coding protein_coding MGP_AJ_T0039119.1 MGP_AJ_G0021184.1 mouse_genomes_project 14 42467953 42468959 - MGP_AJ_P0039119 protein_coding protein_coding MGP_AJ_T0038967.1 MGP_AJ_G0021144.1 mouse_genomes_project 14 33389371 33408403 + MGP_AJ_P0038967 Mat1a protein_coding protein_coding MGP_AJ_T0002575.1 MGP_AJ_G0002475.1 mouse_genomes_project 14 47181623 47181686 + TR_J_pseudogene TR_J_pseudogene MGP_AJ_T0013002.1 MGP_AJ_G0011097.1 mouse_genomes_project 14 38398282 38398661 - processed_pseudogene processed_pseudogene MGP_AJ_T0038907.1 MGP_AJ_G0021123.1 mouse_genomes_project 14 26691720 26789413 - MGP_AJ_P0038907 Bmpr1a protein_coding protein_coding MGP_AJ_T0038908.1 MGP_AJ_G0021123.1 mouse_genomes_project 14 26695472 26745016 - MGP_AJ_P0038908 Bmpr1a protein_coding protein_coding MGP_AJ_T0038909.1 MGP_AJ_G0021123.1 mouse_genomes_project 14 26718099 26790067 - MGP_AJ_P0038909 Bmpr1a protein_coding protein_coding MGP_AJ_T0038910.1 MGP_AJ_G0021123.1 mouse_genomes_project 14 26727892 26789254 - MGP_AJ_P0038910 Bmpr1a protein_coding protein_coding MGP_AJ_T0006680.1 MGP_AJ_G0005516.1 mouse_genomes_project 14 20717835 20721156 - Gm2670 lincRNA lincRNA MGP_AJ_T0006742.1 MGP_AJ_G0005564.1 mouse_genomes_project 14 113581573 113586308 - Gm26679 lincRNA lincRNA MGP_AJ_T0038829.1 MGP_AJ_G0021090.1 mouse_genomes_project 14 24467420 24509385 + Parg protein_coding retained_intron MGP_AJ_T0038830.1 MGP_AJ_G0021090.1 mouse_genomes_project 14 24467420 24563765 + MGP_AJ_P0038830 Parg protein_coding protein_coding MGP_AJ_T0038831.1 MGP_AJ_G0021090.1 mouse_genomes_project 14 24467420 24561864 + MGP_AJ_P0038831 Parg protein_coding protein_coding MGP_AJ_T0038832.1 MGP_AJ_G0021090.1 mouse_genomes_project 14 24467420 24563435 + MGP_AJ_P0038832 Parg protein_coding protein_coding MGP_AJ_T0038833.1 MGP_AJ_G0021090.1 mouse_genomes_project 14 24467442 24474705 + MGP_AJ_P0038833 Parg protein_coding protein_coding MGP_AJ_T0038834.1 MGP_AJ_G0021090.1 mouse_genomes_project 14 24467503 24563435 + MGP_AJ_P0038834 Parg protein_coding nonsense_mediated_decay MGP_AJ_T0038835.1 MGP_AJ_G0021090.1 mouse_genomes_project 14 24467907 24474656 + Parg protein_coding processed_transcript MGP_AJ_T0038836.1 MGP_AJ_G0021090.1 mouse_genomes_project 14 24479870 24508550 + MGP_AJ_P0038836 Parg protein_coding nonsense_mediated_decay MGP_AJ_T0038837.1 MGP_AJ_G0021090.1 mouse_genomes_project 14 24508457 24529015 + Parg protein_coding processed_transcript MGP_AJ_T0038838.1 MGP_AJ_G0021090.1 mouse_genomes_project 14 24541937 24562559 + Parg protein_coding processed_transcript MGP_AJ_T0038396.1 MGP_AJ_G0020989.1 mouse_genomes_project 14 13104962 13112944 - MGP_AJ_P0038396 Myoz1 protein_coding protein_coding MGP_AJ_T0039221.1 MGP_AJ_G0021240.1 mouse_genomes_project 14 44733057 44741284 - MGP_AJ_P0039221 Ndrg2 protein_coding protein_coding MGP_AJ_T0039222.1 MGP_AJ_G0021240.1 mouse_genomes_project 14 44733057 44741284 - MGP_AJ_P0039222 Ndrg2 protein_coding protein_coding MGP_AJ_T0100789.1 MGP_AJ_G0038755.1 mouse_genomes_project 14 76687818 76687952 + Gm24774 snoRNA snoRNA MGP_AJ_T0040199.1 MGP_AJ_G0021566.1 mouse_genomes_project 14 80715124 80813837 + MGP_AJ_P0040199 Tdrd3 protein_coding protein_coding MGP_AJ_T0040200.1 MGP_AJ_G0021566.1 mouse_genomes_project 14 80715124 80844052 + MGP_AJ_P0040200 Tdrd3 protein_coding protein_coding MGP_AJ_T0040201.1 MGP_AJ_G0021566.1 mouse_genomes_project 14 80715151 80844065 + MGP_AJ_P0040201 Tdrd3 protein_coding protein_coding MGP_AJ_T0040202.1 MGP_AJ_G0021566.1 mouse_genomes_project 14 80755671 80778774 + MGP_AJ_P0040202 Tdrd3 protein_coding protein_coding MGP_AJ_T0040203.1 MGP_AJ_G0021566.1 mouse_genomes_project 14 80770431 80784317 + MGP_AJ_P0040203 Tdrd3 protein_coding protein_coding MGP_AJ_T0039939.1 MGP_AJ_G0021469.1 mouse_genomes_project 14 61749711 61785932 - MGP_AJ_P0039939 Adam7 protein_coding protein_coding MGP_AJ_T0039940.1 MGP_AJ_G0021469.1 mouse_genomes_project 14 61750203 61762226 - Adam7 protein_coding retained_intron MGP_AJ_T0002502.1 MGP_AJ_G0002408.1 mouse_genomes_project 14 47156381 47156440 + MGP_AJ_P0002502 Trdj2 TR_J_gene TR_J_gene MGP_AJ_T0040012.1 MGP_AJ_G0021498.1 mouse_genomes_project 14 63743043 63789582 - MGP_AJ_P0040012 Bmp1 protein_coding protein_coding MGP_AJ_T0040013.1 MGP_AJ_G0021498.1 mouse_genomes_project 14 63756214 63789359 - MGP_AJ_P0040013 Bmp1 protein_coding unknown_likely_coding MGP_AJ_T0039976.1 MGP_AJ_G0021488.1 mouse_genomes_project 14 63363522 63401440 + MGP_AJ_P0039976 Bin3 protein_coding protein_coding MGP_AJ_T0000905.1 MGP_AJ_G0000839.1 mouse_genomes_project 14 38534913 38552153 - TEC TEC MGP_AJ_T0002552.1 MGP_AJ_G0002454.1 mouse_genomes_project 14 47231724 47231783 + MGP_AJ_P0002552 Traj7 TR_J_gene TR_J_gene MGP_AJ_T0038765.1 MGP_AJ_G0021077.1 mouse_genomes_project 14 23734787 23751496 - MGP_AJ_P0038765 Mettl6 protein_coding protein_coding MGP_AJ_T0102337.1 MGP_AJ_G0040079.1 mouse_genomes_project 14 43715306 43715741 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0039983.1 MGP_AJ_G0021491.1 mouse_genomes_project 14 63428406 63431884 - MGP_AJ_P0039983 Pdlim2 protein_coding protein_coding MGP_AJ_T0039984.1 MGP_AJ_G0021491.1 mouse_genomes_project 14 63428642 63432018 - MGP_AJ_P0039984 Pdlim2 protein_coding protein_coding MGP_AJ_T0039985.1 MGP_AJ_G0021491.1 mouse_genomes_project 14 63428660 63439222 - MGP_AJ_P0039985 Pdlim2 protein_coding protein_coding MGP_AJ_T0039986.1 MGP_AJ_G0021491.1 mouse_genomes_project 14 63431808 63439350 - MGP_AJ_P0039986 Pdlim2 protein_coding protein_coding MGP_AJ_T0039987.1 MGP_AJ_G0021491.1 mouse_genomes_project 14 63431834 63440736 - Pdlim2 protein_coding retained_intron MGP_AJ_T0039988.1 MGP_AJ_G0021491.1 mouse_genomes_project 14 63433456 63439343 - Pdlim2 protein_coding retained_intron MGP_AJ_T0039989.1 MGP_AJ_G0021491.1 mouse_genomes_project 14 63435477 63439337 - Pdlim2 protein_coding retained_intron MGP_AJ_T0039990.1 MGP_AJ_G0021491.1 mouse_genomes_project 14 63435555 63436030 - Pdlim2 protein_coding retained_intron MGP_AJ_T0006694.1 MGP_AJ_G0005528.1 mouse_genomes_project 14 41202613 41330688 + Otx2os1 lincRNA lincRNA MGP_AJ_T0006695.1 MGP_AJ_G0005528.1 mouse_genomes_project 14 41203484 41253921 + Otx2os1 lincRNA lincRNA MGP_AJ_T0006696.1 MGP_AJ_G0005528.1 mouse_genomes_project 14 41203589 41252017 + Otx2os1 lincRNA lincRNA MGP_AJ_T0038360.1 MGP_AJ_G0020976.1 mouse_genomes_project 14 12524921 12532569 - MGP_AJ_P0038360 Saysd1 protein_coding protein_coding MGP_AJ_T0039946.1 MGP_AJ_G0021474.1 mouse_genomes_project 14 62445064 62449087 + MGP_AJ_P0039946 Nkx3-1 protein_coding protein_coding MGP_AJ_T0039954.1 MGP_AJ_G0021480.1 mouse_genomes_project 14 62594721 62625020 + MGP_AJ_P0039954 protein_coding unknown_likely_coding MGP_AJ_T0039958.1 MGP_AJ_G0021480.1 mouse_genomes_project 14 62605680 62624066 + MGP_AJ_P0039958 protein_coding protein_coding MGP_AJ_T0038918.1 MGP_AJ_G0021126.1 mouse_genomes_project 14 26878756 26888291 - MGP_AJ_P0038918 Opn4 protein_coding protein_coding MGP_AJ_T0038919.1 MGP_AJ_G0021126.1 mouse_genomes_project 14 26880481 26888291 - MGP_AJ_P0038919 Opn4 protein_coding protein_coding MGP_AJ_T0002621.1 MGP_AJ_G0002515.1 mouse_genomes_project 14 45955489 45955962 + MGP_AJ_P0002621 TR_V_gene TR_V_gene MGP_AJ_T0038606.1 MGP_AJ_G0021044.1 mouse_genomes_project 14 21145716 21957684 - MGP_AJ_P0038606 Cacna2d3 protein_coding protein_coding MGP_AJ_T0039417.1 MGP_AJ_G0021282.1 mouse_genomes_project 14 47722392 47724201 - MGP_AJ_P0039417 Cebpe protein_coding protein_coding MGP_AJ_T0038247.1 MGP_AJ_G0020942.1 mouse_genomes_project 14 744174 974301 - MGP_AJ_P0038247 4930452B06Rik protein_coding protein_coding MGP_AJ_T0003543.1 MGP_AJ_G0003218.1 mouse_genomes_project 14 39587673 39606721 - Gm10371 antisense antisense MGP_AJ_T0039196.1 MGP_AJ_G0021233.1 mouse_genomes_project 14 44135958 44143664 + MGP_AJ_P0039196 protein_coding protein_coding MGP_AJ_T0009992.1 MGP_AJ_G0008114.1 mouse_genomes_project 14 54800696 54800789 - Mir16-1 miRNA miRNA MGP_AJ_T0040275.1 MGP_AJ_G0021589.1 mouse_genomes_project 14 96716121 96816298 + MGP_AJ_P0040275 Scel protein_coding protein_coding MGP_AJ_T0040276.1 MGP_AJ_G0021589.1 mouse_genomes_project 14 96732324 96815351 + MGP_AJ_P0040276 Scel protein_coding unknown_likely_coding MGP_AJ_T0038843.1 MGP_AJ_G0021094.1 mouse_genomes_project 14 24728563 24730976 - MGP_AJ_P0038843 Slc18a3 protein_coding protein_coding MGP_AJ_T0038929.1 MGP_AJ_G0021130.1 mouse_genomes_project 14 28329554 28331965 + MGP_AJ_P0038929 4930474N05Rik protein_coding protein_coding MGP_AJ_T0038930.1 MGP_AJ_G0021130.1 mouse_genomes_project 14 28329604 28335222 + MGP_AJ_P0038930 4930474N05Rik protein_coding nonsense_mediated_decay MGP_AJ_T0038616.1 MGP_AJ_G0021049.1 mouse_genomes_project 14 22242295 22273687 + MGP_AJ_P0038616 Chdh protein_coding protein_coding MGP_AJ_T0038617.1 MGP_AJ_G0021049.1 mouse_genomes_project 14 22242443 22260437 + Chdh protein_coding processed_transcript MGP_AJ_T0038618.1 MGP_AJ_G0021049.1 mouse_genomes_project 14 22255917 22271470 + MGP_AJ_P0038618 Chdh protein_coding protein_coding MGP_AJ_T0038649.1 MGP_AJ_G0021055.1 mouse_genomes_project 14 22967824 23070533 + MGP_AJ_P0038649 Sfmbt1 protein_coding protein_coding MGP_AJ_T0038650.1 MGP_AJ_G0021055.1 mouse_genomes_project 14 22968142 23067654 + MGP_AJ_P0038650 Sfmbt1 protein_coding protein_coding MGP_AJ_T0038651.1 MGP_AJ_G0021055.1 mouse_genomes_project 14 22968590 23075287 + MGP_AJ_P0038651 Sfmbt1 protein_coding protein_coding MGP_AJ_T0038652.1 MGP_AJ_G0021055.1 mouse_genomes_project 14 22969472 23070916 + MGP_AJ_P0038652 Sfmbt1 protein_coding protein_coding MGP_AJ_T0038653.1 MGP_AJ_G0021055.1 mouse_genomes_project 14 23029374 23070915 + MGP_AJ_P0038653 Sfmbt1 protein_coding protein_coding MGP_AJ_T0038654.1 MGP_AJ_G0021055.1 mouse_genomes_project 14 23048057 23049813 + Sfmbt1 protein_coding retained_intron MGP_AJ_T0039784.1 MGP_AJ_G0021411.1 mouse_genomes_project 14 56187528 56190482 + MGP_AJ_P0039784 Defb47 protein_coding protein_coding MGP_AJ_T0038383.1 MGP_AJ_G0020987.1 mouse_genomes_project 14 12952801 12999852 - MGP_AJ_P0038383 Ppp3cb protein_coding protein_coding MGP_AJ_T0038384.1 MGP_AJ_G0020987.1 mouse_genomes_project 14 12953305 12999826 - MGP_AJ_P0038384 Ppp3cb protein_coding protein_coding MGP_AJ_T0038385.1 MGP_AJ_G0020987.1 mouse_genomes_project 14 12953467 12999791 - MGP_AJ_P0038385 Ppp3cb protein_coding protein_coding MGP_AJ_T0038386.1 MGP_AJ_G0020987.1 mouse_genomes_project 14 12954989 12957208 - Ppp3cb protein_coding retained_intron MGP_AJ_T0038387.1 MGP_AJ_G0020987.1 mouse_genomes_project 14 12961108 12999719 - MGP_AJ_P0038387 Ppp3cb protein_coding protein_coding MGP_AJ_T0038388.1 MGP_AJ_G0020987.1 mouse_genomes_project 14 12962886 12969454 - Ppp3cb protein_coding retained_intron MGP_AJ_T0038389.1 MGP_AJ_G0020987.1 mouse_genomes_project 14 12968885 12974159 - Ppp3cb protein_coding retained_intron MGP_AJ_T0038390.1 MGP_AJ_G0020987.1 mouse_genomes_project 14 12974045 12977477 - Ppp3cb protein_coding retained_intron MGP_AJ_T0002614.1 MGP_AJ_G0002508.1 mouse_genomes_project 14 45876859 45877436 + MGP_AJ_P0002614 TR_V_gene TR_V_gene MGP_AJ_T0100767.1 MGP_AJ_G0038733.1 mouse_genomes_project 14 28838110 28838233 + Gm24394 snoRNA snoRNA MGP_AJ_T0038299.1 MGP_AJ_G0020961.1 mouse_genomes_project 14 7723262 7807913 - MGP_AJ_P0038299 Lrrc3b protein_coding protein_coding MGP_AJ_T0038300.1 MGP_AJ_G0020961.1 mouse_genomes_project 14 7723263 7805433 - MGP_AJ_P0038300 Lrrc3b protein_coding protein_coding MGP_AJ_T0038588.1 MGP_AJ_G0021036.1 mouse_genomes_project 14 19117890 19172986 - MGP_AJ_P0038588 Appl1 protein_coding protein_coding MGP_AJ_T0038589.1 MGP_AJ_G0021036.1 mouse_genomes_project 14 19152470 19160153 - Appl1 protein_coding retained_intron MGP_AJ_T0038590.1 MGP_AJ_G0021036.1 mouse_genomes_project 14 19153767 19172253 - Appl1 protein_coding retained_intron MGP_AJ_T0038591.1 MGP_AJ_G0021036.1 mouse_genomes_project 14 19164359 19172216 - Appl1 protein_coding retained_intron MGP_AJ_T0038513.1 MGP_AJ_G0021015.1 mouse_genomes_project 14 18171594 18177907 + Ppif protein_coding retained_intron MGP_AJ_T0038514.1 MGP_AJ_G0021015.1 mouse_genomes_project 14 18171610 18177911 + MGP_AJ_P0038514 Ppif protein_coding protein_coding MGP_AJ_T0040341.1 MGP_AJ_G0021616.1 mouse_genomes_project 14 113210841 113236348 - MGP_AJ_P0040341 Oxgr1 protein_coding protein_coding MGP_AJ_T0002535.1 MGP_AJ_G0002437.1 mouse_genomes_project 14 47212522 47212581 + MGP_AJ_P0002535 Traj27 TR_J_gene TR_J_gene MGP_AJ_T0039966.1 MGP_AJ_G0021482.1 mouse_genomes_project 14 62952416 62962598 - MGP_AJ_P0039966 R3hcc1 protein_coding protein_coding MGP_AJ_T0039967.1 MGP_AJ_G0021482.1 mouse_genomes_project 14 62952417 62962507 - MGP_AJ_P0039967 R3hcc1 protein_coding protein_coding MGP_AJ_T0039968.1 MGP_AJ_G0021482.1 mouse_genomes_project 14 62953441 62955131 - R3hcc1 protein_coding retained_intron MGP_AJ_T0039969.1 MGP_AJ_G0021482.1 mouse_genomes_project 14 62958587 62960327 - R3hcc1 protein_coding retained_intron MGP_AJ_T0039970.1 MGP_AJ_G0021482.1 mouse_genomes_project 14 62960638 62962567 - R3hcc1 protein_coding processed_transcript MGP_AJ_T0002620.1 MGP_AJ_G0002514.1 mouse_genomes_project 14 45919628 45919895 + MGP_AJ_P0002620 Trav13n-4 TR_V_gene TR_V_gene MGP_AJ_T0098592.1 MGP_AJ_G0036576.1 mouse_genomes_project 14 103395761 103395872 + n-R5s50 rRNA rRNA MGP_AJ_T0039014.1 MGP_AJ_G0021161.1 mouse_genomes_project 14 39255635 39267321 - MGP_AJ_P0039014 Cnih1 protein_coding unknown_likely_coding MGP_AJ_T0038852.1 MGP_AJ_G0021100.1 mouse_genomes_project 14 25125304 25210514 + MGP_AJ_P0038852 Vstm4 protein_coding protein_coding MGP_AJ_T0039588.1 MGP_AJ_G0021321.1 mouse_genomes_project 14 48721921 48728520 + MGP_AJ_P0039588 Gmpr2 protein_coding protein_coding MGP_AJ_T0040080.1 MGP_AJ_G0021518.1 mouse_genomes_project 14 66778948 66807804 - MGP_AJ_P0040080 protein_coding protein_coding MGP_AJ_T0040071.1 MGP_AJ_G0021514.1 mouse_genomes_project 14 66439225 66543685 - Rb1 protein_coding processed_transcript MGP_AJ_T0040072.1 MGP_AJ_G0021514.1 mouse_genomes_project 14 66443754 66581729 - MGP_AJ_P0040072 Rb1 protein_coding protein_coding MGP_AJ_T0040073.1 MGP_AJ_G0021514.1 mouse_genomes_project 14 66445226 66451519 - Rb1 protein_coding retained_intron MGP_AJ_T0040075.1 MGP_AJ_G0021514.1 mouse_genomes_project 14 66490221 66491462 - Rb1 protein_coding processed_transcript MGP_AJ_T0040076.1 MGP_AJ_G0021514.1 mouse_genomes_project 14 66513863 66515785 - Rb1 protein_coding retained_intron MGP_AJ_T0040077.1 MGP_AJ_G0021514.1 mouse_genomes_project 14 66535704 66581548 - MGP_AJ_P0040077 Rb1 protein_coding nonsense_mediated_decay MGP_AJ_T0013020.1 MGP_AJ_G0011115.1 mouse_genomes_project 14 49874029 49874200 - processed_pseudogene processed_pseudogene MGP_AJ_T0040086.1 MGP_AJ_G0021520.1 mouse_genomes_project 14 67883602 67949776 + MGP_AJ_P0040086 Htr2a protein_coding protein_coding MGP_AJ_T0040171.1 MGP_AJ_G0021552.1 mouse_genomes_project 14 72556068 72569834 - MGP_AJ_P0040171 Rgcc protein_coding protein_coding MGP_AJ_T0039601.1 MGP_AJ_G0021327.1 mouse_genomes_project 14 48807802 48812216 - MGP_AJ_P0039601 Cideb protein_coding protein_coding MGP_AJ_T0039602.1 MGP_AJ_G0021327.1 mouse_genomes_project 14 48808415 48812137 - Cideb protein_coding retained_intron MGP_AJ_T0102332.1 MGP_AJ_G0040074.1 mouse_genomes_project 14 18352802 18362237 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0006706.1 MGP_AJ_G0005536.1 mouse_genomes_project 14 48912477 48922906 - Gm26751 lincRNA lincRNA MGP_AJ_T0100791.1 MGP_AJ_G0038757.1 mouse_genomes_project 14 83062288 83062420 + Gm25415 snoRNA snoRNA MGP_AJ_T0039934.1 MGP_AJ_G0021465.1 mouse_genomes_project 14 60988442 60992639 + MGP_AJ_P0039934 Gnrh1 protein_coding protein_coding MGP_AJ_T0013054.1 MGP_AJ_G0011149.1 mouse_genomes_project 14 117198318 117198859 - processed_pseudogene processed_pseudogene MGP_AJ_T0038234.1 MGP_AJ_G0020939.1 mouse_genomes_project 14 540057 573530 - MGP_AJ_P0038234 Acox2 protein_coding protein_coding MGP_AJ_T0038235.1 MGP_AJ_G0020939.1 mouse_genomes_project 14 540057 574051 - MGP_AJ_P0038235 Acox2 protein_coding protein_coding MGP_AJ_T0038236.1 MGP_AJ_G0020939.1 mouse_genomes_project 14 553984 561099 - Acox2 protein_coding processed_transcript MGP_AJ_T0038237.1 MGP_AJ_G0020939.1 mouse_genomes_project 14 558251 561126 - Acox2 protein_coding retained_intron MGP_AJ_T0038238.1 MGP_AJ_G0020939.1 mouse_genomes_project 14 562571 568220 - Acox2 protein_coding retained_intron MGP_AJ_T0038239.1 MGP_AJ_G0020939.1 mouse_genomes_project 14 568239 572569 - MGP_AJ_P0038239 Acox2 protein_coding protein_coding MGP_AJ_T0038240.1 MGP_AJ_G0020939.1 mouse_genomes_project 14 569891 572852 - Acox2 protein_coding processed_transcript MGP_AJ_T0038241.1 MGP_AJ_G0020939.1 mouse_genomes_project 14 570620 571632 - Acox2 protein_coding retained_intron MGP_AJ_T0039590.1 MGP_AJ_G0021323.1 mouse_genomes_project 14 48753850 48767312 - MGP_AJ_P0039590 Tgm1 protein_coding protein_coding MGP_AJ_T0039591.1 MGP_AJ_G0021323.1 mouse_genomes_project 14 48753850 48767312 - MGP_AJ_P0039591 Tgm1 protein_coding protein_coding MGP_AJ_T0039592.1 MGP_AJ_G0021323.1 mouse_genomes_project 14 48753850 48766908 - MGP_AJ_P0039592 Tgm1 protein_coding protein_coding MGP_AJ_T0002544.1 MGP_AJ_G0002446.1 mouse_genomes_project 14 47220998 47221064 + MGP_AJ_P0002544 Traj18 TR_J_gene TR_J_gene MGP_AJ_T0099520.1 MGP_AJ_G0037486.1 mouse_genomes_project 14 97780080 97780187 + Gm22021 snRNA snRNA MGP_AJ_T0038814.1 MGP_AJ_G0021087.1 mouse_genomes_project 14 24422968 24442960 + MGP_AJ_P0038814 protein_coding protein_coding MGP_AJ_T0038815.1 MGP_AJ_G0021087.1 mouse_genomes_project 14 24423041 24439346 + MGP_AJ_P0038815 protein_coding protein_coding MGP_AJ_T0038816.1 MGP_AJ_G0021087.1 mouse_genomes_project 14 24423084 24439231 + MGP_AJ_P0038816 protein_coding protein_coding MGP_AJ_T0038817.1 MGP_AJ_G0021087.1 mouse_genomes_project 14 24428692 24442960 + MGP_AJ_P0038817 protein_coding nonsense_mediated_decay MGP_AJ_T0038818.1 MGP_AJ_G0021087.1 mouse_genomes_project 14 24428894 24442352 + MGP_AJ_P0038818 protein_coding protein_coding MGP_AJ_T0038819.1 MGP_AJ_G0021087.1 mouse_genomes_project 14 24428895 24435800 + MGP_AJ_P0038819 protein_coding protein_coding MGP_AJ_T0038820.1 MGP_AJ_G0021087.1 mouse_genomes_project 14 24428895 24435504 + MGP_AJ_P0038820 protein_coding protein_coding MGP_AJ_T0038822.1 MGP_AJ_G0021087.1 mouse_genomes_project 14 24429222 24435727 + MGP_AJ_P0038822 protein_coding protein_coding MGP_AJ_T0038579.1 MGP_AJ_G0021034.1 mouse_genomes_project 14 18896713 19090109 + MGP_AJ_P0038579 Dnah12 protein_coding unknown_likely_coding MGP_AJ_T0038580.1 MGP_AJ_G0021034.1 mouse_genomes_project 14 18896714 19017451 + MGP_AJ_P0038580 Dnah12 protein_coding protein_coding MGP_AJ_T0038581.1 MGP_AJ_G0021034.1 mouse_genomes_project 14 18972182 18974925 + MGP_AJ_P0038581 Dnah12 protein_coding protein_coding MGP_AJ_T0038582.1 MGP_AJ_G0021034.1 mouse_genomes_project 14 19032475 19090178 + MGP_AJ_P0038582 Dnah12 protein_coding protein_coding MGP_AJ_T0039763.1 MGP_AJ_G0021400.1 mouse_genomes_project 14 54524551 54598414 - MGP_AJ_P0039763 Kpna3 protein_coding protein_coding MGP_AJ_T0010008.1 MGP_AJ_G0008130.1 mouse_genomes_project 14 71522397 71522504 - Gm23652 miRNA miRNA MGP_AJ_T0038320.1 MGP_AJ_G0020968.1 mouse_genomes_project 14 10563357 10566602 - MGP_AJ_P0038320 Rpl15 protein_coding protein_coding MGP_AJ_T0038321.1 MGP_AJ_G0020968.1 mouse_genomes_project 14 10564480 10566161 - MGP_AJ_P0038321 Rpl15 protein_coding protein_coding MGP_AJ_T0038322.1 MGP_AJ_G0020968.1 mouse_genomes_project 14 10564480 10566564 - MGP_AJ_P0038322 Rpl15 protein_coding protein_coding MGP_AJ_T0038323.1 MGP_AJ_G0020968.1 mouse_genomes_project 14 10564494 10566505 - MGP_AJ_P0038323 Rpl15 protein_coding protein_coding MGP_AJ_T0038324.1 MGP_AJ_G0020968.1 mouse_genomes_project 14 10564838 10566926 - MGP_AJ_P0038324 Rpl15 protein_coding protein_coding MGP_AJ_T0012981.1 MGP_AJ_G0011076.1 mouse_genomes_project 14 11435072 11435429 - processed_pseudogene processed_pseudogene MGP_AJ_T0099508.1 MGP_AJ_G0037474.1 mouse_genomes_project 14 75675002 75675166 - Gm22891 snRNA snRNA MGP_AJ_T0039081.1 MGP_AJ_G0021175.1 mouse_genomes_project 14 40969526 41036952 + MGP_AJ_P0039081 Tmem260 protein_coding protein_coding MGP_AJ_T0039082.1 MGP_AJ_G0021175.1 mouse_genomes_project 14 40969750 41024796 + Tmem260 protein_coding retained_intron MGP_AJ_T0039083.1 MGP_AJ_G0021175.1 mouse_genomes_project 14 40969780 41039295 + MGP_AJ_P0039083 Tmem260 protein_coding protein_coding MGP_AJ_T0039084.1 MGP_AJ_G0021175.1 mouse_genomes_project 14 40969791 41036297 + MGP_AJ_P0039084 Tmem260 protein_coding nonsense_mediated_decay MGP_AJ_T0039085.1 MGP_AJ_G0021175.1 mouse_genomes_project 14 40969796 41032540 + Tmem260 protein_coding retained_intron MGP_AJ_T0038747.1 MGP_AJ_G0021071.1 mouse_genomes_project 14 23471544 23483894 + MGP_AJ_P0038747 Sema3g protein_coding protein_coding MGP_AJ_T0039496.1 MGP_AJ_G0021308.1 mouse_genomes_project 14 48606161 48616221 + MGP_AJ_P0039496 Dcaf11 protein_coding protein_coding MGP_AJ_T0039497.1 MGP_AJ_G0021308.1 mouse_genomes_project 14 48606173 48607597 + MGP_AJ_P0039497 Dcaf11 protein_coding protein_coding MGP_AJ_T0039498.1 MGP_AJ_G0021308.1 mouse_genomes_project 14 48606176 48606912 + Dcaf11 protein_coding processed_transcript MGP_AJ_T0039499.1 MGP_AJ_G0021308.1 mouse_genomes_project 14 48606180 48609089 + MGP_AJ_P0039499 Dcaf11 protein_coding protein_coding MGP_AJ_T0039500.1 MGP_AJ_G0021308.1 mouse_genomes_project 14 48606217 48616220 + MGP_AJ_P0039500 Dcaf11 protein_coding nonsense_mediated_decay MGP_AJ_T0039501.1 MGP_AJ_G0021308.1 mouse_genomes_project 14 48606276 48615691 + Dcaf11 protein_coding retained_intron MGP_AJ_T0039502.1 MGP_AJ_G0021308.1 mouse_genomes_project 14 48606637 48607255 + Dcaf11 protein_coding processed_transcript MGP_AJ_T0039503.1 MGP_AJ_G0021308.1 mouse_genomes_project 14 48606667 48616087 + MGP_AJ_P0039503 Dcaf11 protein_coding protein_coding MGP_AJ_T0039504.1 MGP_AJ_G0021308.1 mouse_genomes_project 14 48606673 48607599 + MGP_AJ_P0039504 Dcaf11 protein_coding protein_coding MGP_AJ_T0039505.1 MGP_AJ_G0021308.1 mouse_genomes_project 14 48606688 48610559 + MGP_AJ_P0039505 Dcaf11 protein_coding protein_coding MGP_AJ_T0039506.1 MGP_AJ_G0021308.1 mouse_genomes_project 14 48606689 48616217 + MGP_AJ_P0039506 Dcaf11 protein_coding nonsense_mediated_decay MGP_AJ_T0039507.1 MGP_AJ_G0021308.1 mouse_genomes_project 14 48607084 48616218 + MGP_AJ_P0039507 Dcaf11 protein_coding protein_coding MGP_AJ_T0039508.1 MGP_AJ_G0021308.1 mouse_genomes_project 14 48607126 48609936 + MGP_AJ_P0039508 Dcaf11 protein_coding protein_coding MGP_AJ_T0039509.1 MGP_AJ_G0021308.1 mouse_genomes_project 14 48607139 48616220 + Dcaf11 protein_coding retained_intron MGP_AJ_T0039510.1 MGP_AJ_G0021308.1 mouse_genomes_project 14 48607222 48616087 + MGP_AJ_P0039510 Dcaf11 protein_coding protein_coding MGP_AJ_T0039511.1 MGP_AJ_G0021308.1 mouse_genomes_project 14 48607222 48616087 + MGP_AJ_P0039511 Dcaf11 protein_coding nonsense_mediated_decay MGP_AJ_T0039512.1 MGP_AJ_G0021308.1 mouse_genomes_project 14 48610546 48610999 + Dcaf11 protein_coding retained_intron MGP_AJ_T0039513.1 MGP_AJ_G0021308.1 mouse_genomes_project 14 48612017 48615545 + Dcaf11 protein_coding processed_transcript MGP_AJ_T0006728.1 MGP_AJ_G0005552.1 mouse_genomes_project 14 68387625 68388268 - Gm15628 lincRNA lincRNA MGP_AJ_T0099505.1 MGP_AJ_G0037471.1 mouse_genomes_project 14 63696580 63696682 - Gm24890 snRNA snRNA MGP_AJ_T0038570.1 MGP_AJ_G0021031.1 mouse_genomes_project 14 18782844 18832023 + MGP_AJ_P0038570 Dennd6a protein_coding protein_coding MGP_AJ_T0038571.1 MGP_AJ_G0021031.1 mouse_genomes_project 14 18782861 18838964 + MGP_AJ_P0038571 Dennd6a protein_coding protein_coding MGP_AJ_T0009986.1 MGP_AJ_G0008108.1 mouse_genomes_project 14 47655563 47655625 - Mir6948 miRNA miRNA MGP_AJ_T0000917.1 MGP_AJ_G0000851.1 mouse_genomes_project 14 60154095 60155467 + TEC TEC MGP_AJ_T0040351.1 MGP_AJ_G0021621.1 mouse_genomes_project 14 114489120 114583165 - MGP_AJ_P0040351 Stk24 protein_coding protein_coding MGP_AJ_T0038950.1 MGP_AJ_G0021138.1 mouse_genomes_project 14 30608849 31718942 - MGP_AJ_P0038950 Nrg3 protein_coding protein_coding MGP_AJ_T0038951.1 MGP_AJ_G0021138.1 mouse_genomes_project 14 30610374 31718679 - MGP_AJ_P0038951 Nrg3 protein_coding protein_coding MGP_AJ_T0038952.1 MGP_AJ_G0021138.1 mouse_genomes_project 14 30610390 31718681 - MGP_AJ_P0038952 Nrg3 protein_coding protein_coding MGP_AJ_T0038953.1 MGP_AJ_G0021138.1 mouse_genomes_project 14 31250665 31718520 - Nrg3 protein_coding retained_intron MGP_AJ_T0038336.1 MGP_AJ_G0020971.1 mouse_genomes_project 14 10880381 11190020 - MGP_AJ_P0038336 Ube2e2 protein_coding nonsense_mediated_decay MGP_AJ_T0038337.1 MGP_AJ_G0020971.1 mouse_genomes_project 14 10880383 11195347 - MGP_AJ_P0038337 Ube2e2 protein_coding protein_coding MGP_AJ_T0038338.1 MGP_AJ_G0020971.1 mouse_genomes_project 14 10880847 11189868 - MGP_AJ_P0038338 Ube2e2 protein_coding protein_coding MGP_AJ_T0038339.1 MGP_AJ_G0020971.1 mouse_genomes_project 14 10881100 11190012 - MGP_AJ_P0038339 Ube2e2 protein_coding protein_coding MGP_AJ_T0038340.1 MGP_AJ_G0020971.1 mouse_genomes_project 14 10881169 10900404 - Ube2e2 protein_coding processed_transcript MGP_AJ_T0038341.1 MGP_AJ_G0020971.1 mouse_genomes_project 14 10881169 11189964 - MGP_AJ_P0038341 Ube2e2 protein_coding protein_coding MGP_AJ_T0038342.1 MGP_AJ_G0020971.1 mouse_genomes_project 14 10893461 10973037 - Ube2e2 protein_coding processed_transcript MGP_AJ_T0038343.1 MGP_AJ_G0020971.1 mouse_genomes_project 14 10893461 11194985 - MGP_AJ_P0038343 Ube2e2 protein_coding protein_coding MGP_AJ_T0038344.1 MGP_AJ_G0020971.1 mouse_genomes_project 14 10900296 11195289 - Ube2e2 protein_coding processed_transcript MGP_AJ_T0038345.1 MGP_AJ_G0020971.1 mouse_genomes_project 14 10937474 11195216 - MGP_AJ_P0038345 Ube2e2 protein_coding protein_coding MGP_AJ_T0038346.1 MGP_AJ_G0020971.1 mouse_genomes_project 14 10937486 11195838 - MGP_AJ_P0038346 Ube2e2 protein_coding protein_coding MGP_AJ_T0038347.1 MGP_AJ_G0020971.1 mouse_genomes_project 14 10937544 11195216 - Ube2e2 protein_coding processed_transcript MGP_AJ_T0038348.1 MGP_AJ_G0020971.1 mouse_genomes_project 14 10945555 11195264 - Ube2e2 protein_coding processed_transcript MGP_AJ_T0038349.1 MGP_AJ_G0020971.1 mouse_genomes_project 14 11187937 11194850 - Ube2e2 protein_coding retained_intron MGP_AJ_T0002543.1 MGP_AJ_G0002445.1 mouse_genomes_project 14 47220607 47220668 + MGP_AJ_P0002543 Traj19 TR_J_gene TR_J_gene MGP_AJ_T0038881.1 MGP_AJ_G0021105.1 mouse_genomes_project 14 25774909 25851139 + MGP_AJ_P0038881 unknown_likely_coding unknown_likely_coding MGP_AJ_T0099485.1 MGP_AJ_G0037451.1 mouse_genomes_project 14 19705113 19705222 + Gm22485 snRNA snRNA MGP_AJ_T0040299.1 MGP_AJ_G0021598.1 mouse_genomes_project 14 99302189 99305264 + MGP_AJ_P0040299 Trim52 protein_coding protein_coding MGP_AJ_T0040300.1 MGP_AJ_G0021598.1 mouse_genomes_project 14 99302190 99327955 + Trim52 protein_coding processed_transcript MGP_AJ_T0038897.1 MGP_AJ_G0021118.1 mouse_genomes_project 14 26512240 26554859 - MGP_AJ_P0038897 Fam35a protein_coding unknown_likely_coding MGP_AJ_T0013000.1 MGP_AJ_G0011095.1 mouse_genomes_project 14 38202967 38203160 - processed_pseudogene processed_pseudogene MGP_AJ_T0040184.1 MGP_AJ_G0021560.1 mouse_genomes_project 14 72918510 72942834 - MGP_AJ_P0040184 Lect1 protein_coding protein_coding MGP_AJ_T0040185.1 MGP_AJ_G0021560.1 mouse_genomes_project 14 72918513 72942920 - MGP_AJ_P0040185 Lect1 protein_coding protein_coding MGP_AJ_T0040186.1 MGP_AJ_G0021560.1 mouse_genomes_project 14 72918636 72923016 - Lect1 protein_coding retained_intron MGP_AJ_T0040187.1 MGP_AJ_G0021560.1 mouse_genomes_project 14 72922297 72926331 - Lect1 protein_coding processed_transcript MGP_AJ_T0040188.1 MGP_AJ_G0021560.1 mouse_genomes_project 14 72922807 72926479 - Lect1 protein_coding retained_intron MGP_AJ_T0009982.1 MGP_AJ_G0008104.1 mouse_genomes_project 14 38147592 38147685 - Mir5131 miRNA miRNA MGP_AJ_T0002557.1 MGP_AJ_G0002459.1 mouse_genomes_project 14 47238106 47238172 + MGP_AJ_P0002557 Traj2 TR_J_gene TR_J_gene MGP_AJ_T0006673.1 MGP_AJ_G0005514.1 mouse_genomes_project 14 18554204 18583566 + 4933413J09Rik lincRNA lincRNA MGP_AJ_T0006674.1 MGP_AJ_G0005514.1 mouse_genomes_project 14 18555177 18601587 + 4933413J09Rik lincRNA lincRNA MGP_AJ_T0006675.1 MGP_AJ_G0005514.1 mouse_genomes_project 14 18555210 18575328 + 4933413J09Rik lincRNA lincRNA MGP_AJ_T0006676.1 MGP_AJ_G0005514.1 mouse_genomes_project 14 18560261 18576446 + 4933413J09Rik lincRNA lincRNA MGP_AJ_T0006677.1 MGP_AJ_G0005514.1 mouse_genomes_project 14 18562018 18576344 + 4933413J09Rik lincRNA lincRNA MGP_AJ_T0006678.1 MGP_AJ_G0005514.1 mouse_genomes_project 14 18562018 18597773 + 4933413J09Rik lincRNA lincRNA MGP_AJ_T0038267.1 MGP_AJ_G0020948.1 mouse_genomes_project 14 4694376 5155124 - MGP_AJ_P0038267 Cadps protein_coding protein_coding MGP_AJ_T0038268.1 MGP_AJ_G0020948.1 mouse_genomes_project 14 4694378 5155124 - MGP_AJ_P0038268 Cadps protein_coding protein_coding MGP_AJ_T0038269.1 MGP_AJ_G0020948.1 mouse_genomes_project 14 4694378 5155124 - MGP_AJ_P0038269 Cadps protein_coding protein_coding MGP_AJ_T0038270.1 MGP_AJ_G0020948.1 mouse_genomes_project 14 4694378 5155124 - MGP_AJ_P0038270 Cadps protein_coding protein_coding MGP_AJ_T0039876.1 MGP_AJ_G0021450.1 mouse_genomes_project 14 59310582 59350642 - MGP_AJ_P0039876 Ephx2 protein_coding protein_coding MGP_AJ_T0040115.1 MGP_AJ_G0021529.1 mouse_genomes_project 14 68842084 68851316 - MGP_AJ_P0040115 Spert protein_coding protein_coding MGP_AJ_T0040116.1 MGP_AJ_G0021529.1 mouse_genomes_project 14 68842084 68852447 - MGP_AJ_P0040116 Spert protein_coding protein_coding MGP_AJ_T0040117.1 MGP_AJ_G0021529.1 mouse_genomes_project 14 68842084 68852447 - MGP_AJ_P0040117 Spert protein_coding protein_coding MGP_AJ_T0040118.1 MGP_AJ_G0021529.1 mouse_genomes_project 14 68842084 68851316 - MGP_AJ_P0040118 Spert protein_coding protein_coding MGP_AJ_T0039975.1 MGP_AJ_G0021487.1 mouse_genomes_project 14 63340822 63343535 + MGP_AJ_P0039975 Egr3 protein_coding protein_coding MGP_AJ_T0012992.1 MGP_AJ_G0011087.1 mouse_genomes_project 14 21454262 21454754 + processed_pseudogene processed_pseudogene MGP_AJ_T0102340.1 MGP_AJ_G0040082.1 mouse_genomes_project 14 44584738 44585188 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0006668.1 MGP_AJ_G0005510.1 mouse_genomes_project 14 17140061 17140784 + 4930428N03Rik lincRNA lincRNA MGP_AJ_T0006669.1 MGP_AJ_G0005510.1 mouse_genomes_project 14 17140082 17147004 + 4930428N03Rik lincRNA lincRNA MGP_AJ_T0040388.1 MGP_AJ_G0021636.1 mouse_genomes_project 14 116162103 116232578 - MGP_AJ_P0040388 Tmtc4 protein_coding protein_coding MGP_AJ_T0040389.1 MGP_AJ_G0021636.1 mouse_genomes_project 14 116162110 116232519 - MGP_AJ_P0040389 Tmtc4 protein_coding nonsense_mediated_decay MGP_AJ_T0040390.1 MGP_AJ_G0021636.1 mouse_genomes_project 14 116162863 116232444 - MGP_AJ_P0040390 Tmtc4 protein_coding protein_coding MGP_AJ_T0040391.1 MGP_AJ_G0021636.1 mouse_genomes_project 14 116162892 116232444 - MGP_AJ_P0040391 Tmtc4 protein_coding protein_coding MGP_AJ_T0040392.1 MGP_AJ_G0021636.1 mouse_genomes_project 14 116163038 116179163 - Tmtc4 protein_coding processed_transcript MGP_AJ_T0040393.1 MGP_AJ_G0021636.1 mouse_genomes_project 14 116167937 116172265 - Tmtc4 protein_coding retained_intron MGP_AJ_T0040394.1 MGP_AJ_G0021636.1 mouse_genomes_project 14 116175616 116232542 - Tmtc4 protein_coding retained_intron MGP_AJ_T0040395.1 MGP_AJ_G0021636.1 mouse_genomes_project 14 116187878 116232577 - MGP_AJ_P0040395 Tmtc4 protein_coding nonsense_mediated_decay MGP_AJ_T0040396.1 MGP_AJ_G0021636.1 mouse_genomes_project 14 116219129 116232471 - Tmtc4 protein_coding processed_transcript MGP_AJ_T0003553.1 MGP_AJ_G0003226.1 mouse_genomes_project 14 48093521 48096309 + Zfhx2os antisense antisense MGP_AJ_T0039752.1 MGP_AJ_G0021396.1 mouse_genomes_project 14 54296313 54401781 + MGP_AJ_P0039752 protein_coding protein_coding MGP_AJ_T0039753.1 MGP_AJ_G0021396.1 mouse_genomes_project 14 54296347 54358387 + MGP_AJ_P0039753 protein_coding protein_coding MGP_AJ_T0039754.1 MGP_AJ_G0021396.1 mouse_genomes_project 14 54305898 54374219 + MGP_AJ_P0039754 protein_coding protein_coding MGP_AJ_T0039755.1 MGP_AJ_G0021396.1 mouse_genomes_project 14 54331900 54354373 + MGP_AJ_P0039755 protein_coding protein_coding MGP_AJ_T0039756.1 MGP_AJ_G0021396.1 mouse_genomes_project 14 54332115 54374224 + MGP_AJ_P0039756 protein_coding unknown_likely_coding MGP_AJ_T0039757.1 MGP_AJ_G0021396.1 mouse_genomes_project 14 54347545 54363642 + protein_coding retained_intron MGP_AJ_T0100769.1 MGP_AJ_G0038735.1 mouse_genomes_project 14 29680215 29680346 - Gm23909 snoRNA snoRNA MGP_AJ_T0039634.1 MGP_AJ_G0021354.1 mouse_genomes_project 14 49660451 49744615 + MGP_AJ_P0039634 Parp4 protein_coding protein_coding MGP_AJ_T0039635.1 MGP_AJ_G0021354.1 mouse_genomes_project 14 49740155 49744613 + Parp4 protein_coding retained_intron MGP_AJ_T0039814.1 MGP_AJ_G0021423.1 mouse_genomes_project 14 56819031 57031358 + MGP_AJ_P0039814 Xkr6 protein_coding protein_coding MGP_AJ_T0039815.1 MGP_AJ_G0021423.1 mouse_genomes_project 14 56819203 56875077 + MGP_AJ_P0039815 Xkr6 protein_coding nonsense_mediated_decay MGP_AJ_T0039816.1 MGP_AJ_G0021423.1 mouse_genomes_project 14 56819554 56871704 + MGP_AJ_P0039816 Xkr6 protein_coding nonsense_mediated_decay MGP_AJ_T0039817.1 MGP_AJ_G0021423.1 mouse_genomes_project 14 56868051 56871992 + Xkr6 protein_coding processed_transcript MGP_AJ_T0039818.1 MGP_AJ_G0021423.1 mouse_genomes_project 14 57005133 57030568 + MGP_AJ_P0039818 Xkr6 protein_coding protein_coding MGP_AJ_T0013053.1 MGP_AJ_G0011148.1 mouse_genomes_project 14 116936721 116936935 - processed_pseudogene processed_pseudogene MGP_AJ_T0013017.1 MGP_AJ_G0011112.1 mouse_genomes_project 14 47343161 47343845 + processed_pseudogene processed_pseudogene MGP_AJ_T0006739.1 MGP_AJ_G0005561.1 mouse_genomes_project 14 111527863 111559843 + 1700044C05Rik lincRNA lincRNA MGP_AJ_T0038276.1 MGP_AJ_G0020950.1 mouse_genomes_project 14 6029240 6041515 + MGP_AJ_P0038276 Sntn protein_coding protein_coding MGP_AJ_T0039738.1 MGP_AJ_G0021391.1 mouse_genomes_project 14 53528264 53530976 + MGP_AJ_P0039738 Amer2 protein_coding protein_coding MGP_AJ_T0000908.1 MGP_AJ_G0000842.1 mouse_genomes_project 14 45076227 45081568 + TEC TEC MGP_AJ_T0039140.1 MGP_AJ_G0021202.1 mouse_genomes_project 14 43048642 43050229 + MGP_AJ_P0039140 protein_coding protein_coding MGP_AJ_T0002487.1 MGP_AJ_G0002396.1 mouse_genomes_project 14 47163136 47169097 + MGP_AJ_P0002487 Trdc TR_C_gene TR_C_gene MGP_AJ_T0003532.1 MGP_AJ_G0003207.1 mouse_genomes_project 14 18874104 18874602 + 9930004E17Rik antisense antisense MGP_AJ_T0002522.1 MGP_AJ_G0002424.1 mouse_genomes_project 14 47196565 47196620 + MGP_AJ_P0002522 Traj41 TR_J_gene TR_J_gene MGP_AJ_T0039177.1 MGP_AJ_G0021219.1 mouse_genomes_project 14 43561547 43571409 + MGP_AJ_P0039177 Pnp protein_coding protein_coding MGP_AJ_T0039178.1 MGP_AJ_G0021219.1 mouse_genomes_project 14 43561752 43570027 + MGP_AJ_P0039178 Pnp protein_coding protein_coding MGP_AJ_T0040129.1 MGP_AJ_G0021536.1 mouse_genomes_project 14 69353816 69378391 - MGP_AJ_P0040129 Gpalpp1 protein_coding protein_coding MGP_AJ_T0038894.1 MGP_AJ_G0021117.1 mouse_genomes_project 14 26496850 26499625 + Syt15 protein_coding retained_intron MGP_AJ_T0038895.1 MGP_AJ_G0021117.1 mouse_genomes_project 14 26497301 26504994 + MGP_AJ_P0038895 Syt15 protein_coding protein_coding MGP_AJ_T0038896.1 MGP_AJ_G0021117.1 mouse_genomes_project 14 26497302 26507675 + MGP_AJ_P0038896 Syt15 protein_coding protein_coding MGP_AJ_T0038849.1 MGP_AJ_G0021097.1 mouse_genomes_project 14 24928606 24955386 - MGP_AJ_P0038849 3425401B19Rik protein_coding protein_coding MGP_AJ_T0039102.1 MGP_AJ_G0021179.1 mouse_genomes_project 14 41712188 41730721 + MGP_AJ_P0039102 Naa30 protein_coding protein_coding MGP_AJ_T0039103.1 MGP_AJ_G0021179.1 mouse_genomes_project 14 41712488 41730878 + MGP_AJ_P0039103 Naa30 protein_coding protein_coding MGP_AJ_T0039104.1 MGP_AJ_G0021179.1 mouse_genomes_project 14 41717784 41729220 + Naa30 protein_coding retained_intron MGP_AJ_T0039105.1 MGP_AJ_G0021179.1 mouse_genomes_project 14 41718405 41728102 + Naa30 protein_coding retained_intron MGP_AJ_T0038403.1 MGP_AJ_G0020994.1 mouse_genomes_project 14 13163860 13179733 + MGP_AJ_P0038403 Zswim8 protein_coding protein_coding MGP_AJ_T0039223.1 MGP_AJ_G0021241.1 mouse_genomes_project 14 44746176 44748437 + MGP_AJ_P0039223 Tppp2 protein_coding protein_coding MGP_AJ_T0039224.1 MGP_AJ_G0021241.1 mouse_genomes_project 14 44746506 44748437 + MGP_AJ_P0039224 Tppp2 protein_coding protein_coding MGP_AJ_T0011368.1 MGP_AJ_G0009490.1 mouse_genomes_project 14 24286265 24286362 + Gm26045 misc_RNA misc_RNA MGP_AJ_T0038553.1 MGP_AJ_G0021029.1 mouse_genomes_project 14 18613866 18738702 - MGP_AJ_P0038553 Slmap protein_coding protein_coding MGP_AJ_T0038554.1 MGP_AJ_G0021029.1 mouse_genomes_project 14 18613871 18674803 - MGP_AJ_P0038554 Slmap protein_coding protein_coding MGP_AJ_T0038555.1 MGP_AJ_G0021029.1 mouse_genomes_project 14 18613872 18660825 - MGP_AJ_P0038555 Slmap protein_coding protein_coding MGP_AJ_T0038556.1 MGP_AJ_G0021029.1 mouse_genomes_project 14 18613873 18737511 - MGP_AJ_P0038556 Slmap protein_coding protein_coding MGP_AJ_T0038557.1 MGP_AJ_G0021029.1 mouse_genomes_project 14 18614098 18737389 - MGP_AJ_P0038557 Slmap protein_coding protein_coding MGP_AJ_T0038558.1 MGP_AJ_G0021029.1 mouse_genomes_project 14 18614098 18737389 - MGP_AJ_P0038558 Slmap protein_coding protein_coding MGP_AJ_T0038559.1 MGP_AJ_G0021029.1 mouse_genomes_project 14 18614994 18738666 - MGP_AJ_P0038559 Slmap protein_coding protein_coding MGP_AJ_T0038560.1 MGP_AJ_G0021029.1 mouse_genomes_project 14 18615428 18660812 - MGP_AJ_P0038560 Slmap protein_coding protein_coding MGP_AJ_T0038561.1 MGP_AJ_G0021029.1 mouse_genomes_project 14 18623155 18643470 - MGP_AJ_P0038561 Slmap protein_coding protein_coding MGP_AJ_T0038562.1 MGP_AJ_G0021029.1 mouse_genomes_project 14 18627910 18643301 - Slmap protein_coding processed_transcript MGP_AJ_T0038563.1 MGP_AJ_G0021029.1 mouse_genomes_project 14 18627986 18630763 - Slmap protein_coding retained_intron MGP_AJ_T0038564.1 MGP_AJ_G0021029.1 mouse_genomes_project 14 18628209 18643536 - MGP_AJ_P0038564 Slmap protein_coding protein_coding MGP_AJ_T0038565.1 MGP_AJ_G0021029.1 mouse_genomes_project 14 18628935 18639867 - Slmap protein_coding retained_intron MGP_AJ_T0038566.1 MGP_AJ_G0021029.1 mouse_genomes_project 14 18637805 18643384 - Slmap protein_coding retained_intron MGP_AJ_T0038567.1 MGP_AJ_G0021029.1 mouse_genomes_project 14 18643269 18664334 - MGP_AJ_P0038567 Slmap protein_coding protein_coding MGP_AJ_T0038568.1 MGP_AJ_G0021029.1 mouse_genomes_project 14 18660439 18664325 - Slmap protein_coding retained_intron MGP_AJ_T0039086.1 MGP_AJ_G0021176.1 mouse_genomes_project 14 41190206 41198603 - MGP_AJ_P0039086 Otx2 protein_coding protein_coding MGP_AJ_T0039087.1 MGP_AJ_G0021176.1 mouse_genomes_project 14 41190692 41196199 - MGP_AJ_P0039087 Otx2 protein_coding protein_coding MGP_AJ_T0039088.1 MGP_AJ_G0021176.1 mouse_genomes_project 14 41190692 41200869 - MGP_AJ_P0039088 Otx2 protein_coding protein_coding MGP_AJ_T0039089.1 MGP_AJ_G0021176.1 mouse_genomes_project 14 41191437 41195259 - MGP_AJ_P0039089 Otx2 protein_coding protein_coding MGP_AJ_T0039090.1 MGP_AJ_G0021176.1 mouse_genomes_project 14 41191474 41201000 - MGP_AJ_P0039090 Otx2 protein_coding protein_coding MGP_AJ_T0039091.1 MGP_AJ_G0021176.1 mouse_genomes_project 14 41191826 41200864 - MGP_AJ_P0039091 Otx2 protein_coding protein_coding MGP_AJ_T0039092.1 MGP_AJ_G0021176.1 mouse_genomes_project 14 41193881 41200864 - MGP_AJ_P0039092 Otx2 protein_coding protein_coding MGP_AJ_T0039093.1 MGP_AJ_G0021176.1 mouse_genomes_project 14 41193931 41198878 - MGP_AJ_P0039093 Otx2 protein_coding protein_coding MGP_AJ_T0038463.1 MGP_AJ_G0021006.1 mouse_genomes_project 14 14309002 14310825 - MGP_AJ_P0038463 Comtd1 protein_coding protein_coding MGP_AJ_T0038464.1 MGP_AJ_G0021006.1 mouse_genomes_project 14 14309131 14310847 - Comtd1 protein_coding retained_intron MGP_AJ_T0038465.1 MGP_AJ_G0021006.1 mouse_genomes_project 14 14309137 14309763 - Comtd1 protein_coding retained_intron MGP_AJ_T0100812.1 MGP_AJ_G0038778.1 mouse_genomes_project 14 117146902 117147030 + Gm25272 snoRNA snoRNA MGP_AJ_T0012999.1 MGP_AJ_G0011094.1 mouse_genomes_project 14 37673484 37674394 + processed_pseudogene processed_pseudogene MGP_AJ_T0002605.1 MGP_AJ_G0002499.1 mouse_genomes_project 14 45634939 45635412 + MGP_AJ_P0002605 TR_V_gene TR_V_gene MGP_AJ_T0040127.1 MGP_AJ_G0021534.1 mouse_genomes_project 14 69159366 69275099 - MGP_AJ_P0040127 Gtf2f2 protein_coding protein_coding MGP_AJ_T0011365.1 MGP_AJ_G0009487.1 mouse_genomes_project 14 13722997 13723233 + Gm26372 misc_RNA misc_RNA MGP_AJ_T0039608.1 MGP_AJ_G0021332.1 mouse_genomes_project 14 48870171 48879321 + MGP_AJ_P0039608 Nfatc4 protein_coding protein_coding MGP_AJ_T0039609.1 MGP_AJ_G0021332.1 mouse_genomes_project 14 48870171 48879321 + MGP_AJ_P0039609 Nfatc4 protein_coding protein_coding MGP_AJ_T0039152.1 MGP_AJ_G0021212.1 mouse_genomes_project 14 43422266 43436514 + MGP_AJ_P0039152 Parp2 protein_coding protein_coding MGP_AJ_T0098404.1 MGP_AJ_G0036388.1 mouse_genomes_project 14 99884984 99885174 - pseudogene pseudogene MGP_AJ_T0100754.1 MGP_AJ_G0038720.1 mouse_genomes_project 14 2794566 2794766 + Gm22053 snoRNA snoRNA MGP_AJ_T0040291.1 MGP_AJ_G0021595.1 mouse_genomes_project 14 98465682 98516124 + MGP_AJ_P0040291 Ndfip2 protein_coding protein_coding MGP_AJ_T0040292.1 MGP_AJ_G0021595.1 mouse_genomes_project 14 98465827 98516130 + MGP_AJ_P0040292 Ndfip2 protein_coding protein_coding MGP_AJ_T0040293.1 MGP_AJ_G0021595.1 mouse_genomes_project 14 98465927 98500587 + Ndfip2 protein_coding retained_intron MGP_AJ_T0040294.1 MGP_AJ_G0021595.1 mouse_genomes_project 14 98497926 98515693 + Ndfip2 protein_coding retained_intron MGP_AJ_T0040295.1 MGP_AJ_G0021595.1 mouse_genomes_project 14 98498322 98515627 + Ndfip2 protein_coding retained_intron MGP_AJ_T0040296.1 MGP_AJ_G0021595.1 mouse_genomes_project 14 98500187 98515693 + Ndfip2 protein_coding processed_transcript MGP_AJ_T0039440.1 MGP_AJ_G0021290.1 mouse_genomes_project 14 47934492 47944450 - MGP_AJ_P0039440 Efs protein_coding protein_coding MGP_AJ_T0002511.1 MGP_AJ_G0002415.1 mouse_genomes_project 14 47187930 47187993 + MGP_AJ_P0002511 Traj50 TR_J_gene TR_J_gene MGP_AJ_T0040122.1 MGP_AJ_G0021533.1 mouse_genomes_project 14 69105127 69108653 + MGP_AJ_P0040122 Tpt1 protein_coding protein_coding MGP_AJ_T0040123.1 MGP_AJ_G0021533.1 mouse_genomes_project 14 69105336 69108763 + MGP_AJ_P0040123 Tpt1 protein_coding protein_coding MGP_AJ_T0040124.1 MGP_AJ_G0021533.1 mouse_genomes_project 14 69105365 69107062 + Tpt1 protein_coding retained_intron MGP_AJ_T0040125.1 MGP_AJ_G0021533.1 mouse_genomes_project 14 69105366 69106004 + Tpt1 protein_coding retained_intron MGP_AJ_T0040126.1 MGP_AJ_G0021533.1 mouse_genomes_project 14 69105389 69107258 + Tpt1 protein_coding retained_intron MGP_AJ_T0039863.1 MGP_AJ_G0021445.1 mouse_genomes_project 14 59059029 59088041 + MGP_AJ_P0039863 Ccdc25 protein_coding protein_coding MGP_AJ_T0038266.1 MGP_AJ_G0020947.1 mouse_genomes_project 14 4663757 4667731 - MGP_AJ_P0038266 Fezf2 protein_coding protein_coding MGP_AJ_T0039620.1 MGP_AJ_G0021341.1 mouse_genomes_project 14 49135673 49138034 - MGP_AJ_P0039620 Cma2 protein_coding protein_coding MGP_AJ_T0039184.1 MGP_AJ_G0021224.1 mouse_genomes_project 14 43673983 43675115 - MGP_AJ_P0039184 Olfr750 protein_coding protein_coding MGP_AJ_T0039432.1 MGP_AJ_G0021288.1 mouse_genomes_project 14 47910726 47915412 + MGP_AJ_P0039432 Pabpn1 protein_coding protein_coding MGP_AJ_T0039433.1 MGP_AJ_G0021288.1 mouse_genomes_project 14 47912376 47916400 + MGP_AJ_P0039433 Pabpn1 protein_coding protein_coding MGP_AJ_T0039434.1 MGP_AJ_G0021288.1 mouse_genomes_project 14 47912383 47916327 + MGP_AJ_P0039434 Pabpn1 protein_coding protein_coding MGP_AJ_T0039435.1 MGP_AJ_G0021288.1 mouse_genomes_project 14 47912384 47916287 + MGP_AJ_P0039435 Pabpn1 protein_coding nonsense_mediated_decay MGP_AJ_T0039436.1 MGP_AJ_G0021288.1 mouse_genomes_project 14 47912384 47917160 + MGP_AJ_P0039436 Pabpn1 protein_coding protein_coding MGP_AJ_T0039437.1 MGP_AJ_G0021288.1 mouse_genomes_project 14 47912846 47916365 + MGP_AJ_P0039437 Pabpn1 protein_coding protein_coding MGP_AJ_T0039438.1 MGP_AJ_G0021288.1 mouse_genomes_project 14 47913061 47914120 + MGP_AJ_P0039438 Pabpn1 protein_coding protein_coding MGP_AJ_T0002662.1 MGP_AJ_G0002544.1 mouse_genomes_project 14 46994199 46994724 + MGP_AJ_P0002662 Trav23 TR_V_gene TR_V_gene MGP_AJ_T0000920.1 MGP_AJ_G0000854.1 mouse_genomes_project 14 62541330 62542827 + TEC TEC MGP_AJ_T0002712.1 MGP_AJ_G0002584.1 mouse_genomes_project 14 45445564 45446063 + TR_V_pseudogene TR_V_pseudogene MGP_AJ_T0102341.1 MGP_AJ_G0040083.1 mouse_genomes_project 14 117840123 117840408 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0013034.1 MGP_AJ_G0011129.1 mouse_genomes_project 14 67981800 67995530 + processed_pseudogene processed_pseudogene MGP_AJ_T0038353.1 MGP_AJ_G0020974.1 mouse_genomes_project 14 12238649 12252339 - MGP_AJ_P0038353 2700060E02Rik protein_coding protein_coding MGP_AJ_T0038642.1 MGP_AJ_G0021054.1 mouse_genomes_project 14 22906846 22944248 + MGP_AJ_P0038642 Rft1 protein_coding protein_coding MGP_AJ_T0038643.1 MGP_AJ_G0021054.1 mouse_genomes_project 14 22906861 22913848 + Rft1 protein_coding processed_transcript MGP_AJ_T0038644.1 MGP_AJ_G0021054.1 mouse_genomes_project 14 22906869 22916435 + Rft1 protein_coding processed_transcript MGP_AJ_T0038645.1 MGP_AJ_G0021054.1 mouse_genomes_project 14 22906873 22917618 + Rft1 protein_coding retained_intron MGP_AJ_T0038646.1 MGP_AJ_G0021054.1 mouse_genomes_project 14 22906893 22944248 + MGP_AJ_P0038646 Rft1 protein_coding nonsense_mediated_decay MGP_AJ_T0038647.1 MGP_AJ_G0021054.1 mouse_genomes_project 14 22906893 22944248 + MGP_AJ_P0038647 Rft1 protein_coding nonsense_mediated_decay MGP_AJ_T0038648.1 MGP_AJ_G0021054.1 mouse_genomes_project 14 22935353 22942885 + Rft1 protein_coding processed_transcript MGP_AJ_T0009988.1 MGP_AJ_G0008110.1 mouse_genomes_project 14 47994811 47994888 - Mir208b miRNA miRNA MGP_AJ_T0002635.1 MGP_AJ_G0002526.1 mouse_genomes_project 14 46245261 46245770 + MGP_AJ_P0002635 TR_V_gene TR_V_gene MGP_AJ_T0009970.1 MGP_AJ_G0008092.1 mouse_genomes_project 14 10487987 10488066 + Gm44469 miRNA miRNA MGP_AJ_T0039727.1 MGP_AJ_G0021386.1 mouse_genomes_project 14 52801224 52807600 + MGP_AJ_P0039727 Shisa2 protein_coding protein_coding MGP_AJ_T0038791.1 MGP_AJ_G0021083.1 mouse_genomes_project 14 24291867 24325066 + MGP_AJ_P0038791 Galnt15 protein_coding protein_coding MGP_AJ_T0038792.1 MGP_AJ_G0021083.1 mouse_genomes_project 14 24292288 24323096 + MGP_AJ_P0038792 Galnt15 protein_coding protein_coding MGP_AJ_T0100755.1 MGP_AJ_G0038721.1 mouse_genomes_project 14 3646384 3646516 + Gm25466 snoRNA snoRNA MGP_AJ_T0038467.1 MGP_AJ_G0021008.1 mouse_genomes_project 14 14482447 15517753 + MGP_AJ_P0038467 1700112E06Rik protein_coding protein_coding MGP_AJ_T0038468.1 MGP_AJ_G0021008.1 mouse_genomes_project 14 14482556 15301990 + MGP_AJ_P0038468 1700112E06Rik protein_coding protein_coding MGP_AJ_T0038469.1 MGP_AJ_G0021008.1 mouse_genomes_project 14 14482583 15517753 + MGP_AJ_P0038469 1700112E06Rik protein_coding protein_coding MGP_AJ_T0038470.1 MGP_AJ_G0021008.1 mouse_genomes_project 14 14482583 15183853 + MGP_AJ_P0038470 1700112E06Rik protein_coding protein_coding MGP_AJ_T0038471.1 MGP_AJ_G0021008.1 mouse_genomes_project 14 14775422 15050274 + 1700112E06Rik protein_coding processed_transcript MGP_AJ_T0038472.1 MGP_AJ_G0021008.1 mouse_genomes_project 14 15043573 15065163 + 1700112E06Rik protein_coding processed_transcript MGP_AJ_T0038845.1 MGP_AJ_G0021096.1 mouse_genomes_project 14 24867456 24918859 + MGP_AJ_P0038845 Prrxl1 protein_coding protein_coding MGP_AJ_T0038846.1 MGP_AJ_G0021096.1 mouse_genomes_project 14 24867457 24898391 + MGP_AJ_P0038846 Prrxl1 protein_coding protein_coding MGP_AJ_T0038847.1 MGP_AJ_G0021096.1 mouse_genomes_project 14 24867590 24898367 + MGP_AJ_P0038847 Prrxl1 protein_coding protein_coding MGP_AJ_T0038848.1 MGP_AJ_G0021096.1 mouse_genomes_project 14 24867916 24918901 + MGP_AJ_P0038848 Prrxl1 protein_coding protein_coding MGP_AJ_T0039546.1 MGP_AJ_G0021314.1 mouse_genomes_project 14 48651612 48658048 + MGP_AJ_P0039546 Irf9 protein_coding protein_coding MGP_AJ_T0039547.1 MGP_AJ_G0021314.1 mouse_genomes_project 14 48652026 48658048 + MGP_AJ_P0039547 Irf9 protein_coding protein_coding MGP_AJ_T0039548.1 MGP_AJ_G0021314.1 mouse_genomes_project 14 48652618 48653878 + Irf9 protein_coding retained_intron MGP_AJ_T0039549.1 MGP_AJ_G0021314.1 mouse_genomes_project 14 48652620 48658048 + MGP_AJ_P0039549 Irf9 protein_coding protein_coding MGP_AJ_T0039550.1 MGP_AJ_G0021314.1 mouse_genomes_project 14 48653837 48658045 + Irf9 protein_coding retained_intron MGP_AJ_T0039551.1 MGP_AJ_G0021314.1 mouse_genomes_project 14 48655292 48656751 + Irf9 protein_coding retained_intron MGP_AJ_T0002526.1 MGP_AJ_G0002428.1 mouse_genomes_project 14 47201807 47201867 + MGP_AJ_P0002526 Traj37 TR_J_gene TR_J_gene MGP_AJ_T0017380.1 MGP_AJ_G0015243.1 mouse_genomes_project 14 37401535 37407626 - 4930431P03Rik processed_transcript retained_intron MGP_AJ_T0017381.1 MGP_AJ_G0015243.1 mouse_genomes_project 14 37402738 37407626 - 4930431P03Rik processed_transcript antisense MGP_AJ_T0098402.1 MGP_AJ_G0036386.1 mouse_genomes_project 14 13493731 13503721 - pseudogene pseudogene MGP_AJ_T0003533.1 MGP_AJ_G0003208.1 mouse_genomes_project 14 23025963 23033237 - 1700087M22Rik antisense antisense MGP_AJ_T0038523.1 MGP_AJ_G0021020.1 mouse_genomes_project 14 18364961 18380002 - MGP_AJ_P0038523 protein_coding protein_coding MGP_AJ_T0038524.1 MGP_AJ_G0021020.1 mouse_genomes_project 14 18365344 18367840 - MGP_AJ_P0038524 protein_coding protein_coding MGP_AJ_T0038525.1 MGP_AJ_G0021020.1 mouse_genomes_project 14 18365344 18379376 - MGP_AJ_P0038525 protein_coding protein_coding MGP_AJ_T0038527.1 MGP_AJ_G0021020.1 mouse_genomes_project 14 18365388 18379378 - MGP_AJ_P0038527 protein_coding protein_coding MGP_AJ_T0039614.1 MGP_AJ_G0021335.1 mouse_genomes_project 14 48933377 48945186 + MGP_AJ_P0039614 Khnyn protein_coding protein_coding MGP_AJ_T0100788.1 MGP_AJ_G0038754.1 mouse_genomes_project 14 71881289 71881411 + Gm26251 snoRNA snoRNA MGP_AJ_T0038973.1 MGP_AJ_G0021149.1 mouse_genomes_project 14 37435749 37451408 + MGP_AJ_P0038973 Ptger2 protein_coding protein_coding MGP_AJ_T0039936.1 MGP_AJ_G0021467.1 mouse_genomes_project 14 61330159 61378376 - MGP_AJ_P0039936 Nefm protein_coding protein_coding MGP_AJ_T0039938.1 MGP_AJ_G0021467.1 mouse_genomes_project 14 61372875 61378376 - MGP_AJ_P0039938 Nefm protein_coding protein_coding MGP_AJ_T0010018.1 MGP_AJ_G0008140.1 mouse_genomes_project 14 108246714 108246810 + Mir18 miRNA miRNA MGP_AJ_T0039458.1 MGP_AJ_G0021298.1 mouse_genomes_project 14 48080721 48112751 - MGP_AJ_P0039458 Zfhx2 protein_coding protein_coding MGP_AJ_T0039459.1 MGP_AJ_G0021298.1 mouse_genomes_project 14 48086662 48092666 - Zfhx2 protein_coding retained_intron MGP_AJ_T0039460.1 MGP_AJ_G0021298.1 mouse_genomes_project 14 48095003 48100883 - Zfhx2 protein_coding retained_intron MGP_AJ_T0039461.1 MGP_AJ_G0021298.1 mouse_genomes_project 14 48109998 48112469 - Zfhx2 protein_coding retained_intron MGP_AJ_T0002533.1 MGP_AJ_G0002435.1 mouse_genomes_project 14 47211165 47211225 + MGP_AJ_P0002533 Traj29 TR_J_gene TR_J_gene MGP_AJ_T0038708.1 MGP_AJ_G0021068.1 mouse_genomes_project 14 23392811 23394665 - Stab1 protein_coding retained_intron MGP_AJ_T0038709.1 MGP_AJ_G0021068.1 mouse_genomes_project 14 23392811 23396631 - Stab1 protein_coding retained_intron MGP_AJ_T0038710.1 MGP_AJ_G0021068.1 mouse_genomes_project 14 23392811 23393647 - MGP_AJ_P0038710 Stab1 protein_coding protein_coding MGP_AJ_T0038711.1 MGP_AJ_G0021068.1 mouse_genomes_project 14 23392811 23422429 - MGP_AJ_P0038711 Stab1 protein_coding protein_coding MGP_AJ_T0038712.1 MGP_AJ_G0021068.1 mouse_genomes_project 14 23392815 23399252 - Stab1 protein_coding retained_intron MGP_AJ_T0038713.1 MGP_AJ_G0021068.1 mouse_genomes_project 14 23392815 23393973 - Stab1 protein_coding processed_transcript MGP_AJ_T0038714.1 MGP_AJ_G0021068.1 mouse_genomes_project 14 23392817 23397524 - Stab1 protein_coding retained_intron MGP_AJ_T0038715.1 MGP_AJ_G0021068.1 mouse_genomes_project 14 23393767 23394742 - Stab1 protein_coding retained_intron MGP_AJ_T0038716.1 MGP_AJ_G0021068.1 mouse_genomes_project 14 23395431 23396991 - MGP_AJ_P0038716 Stab1 protein_coding protein_coding MGP_AJ_T0038717.1 MGP_AJ_G0021068.1 mouse_genomes_project 14 23396182 23396796 - Stab1 protein_coding retained_intron MGP_AJ_T0038718.1 MGP_AJ_G0021068.1 mouse_genomes_project 14 23410424 23411172 - Stab1 protein_coding retained_intron MGP_AJ_T0038719.1 MGP_AJ_G0021068.1 mouse_genomes_project 14 23410424 23415617 - Stab1 protein_coding retained_intron MGP_AJ_T0038720.1 MGP_AJ_G0021068.1 mouse_genomes_project 14 23412297 23422383 - Stab1 protein_coding retained_intron MGP_AJ_T0039382.1 MGP_AJ_G0021272.1 mouse_genomes_project 14 47552066 47566091 - MGP_AJ_P0039382 Haus4 protein_coding protein_coding MGP_AJ_T0000906.1 MGP_AJ_G0000840.1 mouse_genomes_project 14 40257982 40260542 + TEC TEC MGP_AJ_T0009969.1 MGP_AJ_G0008091.1 mouse_genomes_project 14 3589131 3589216 + Mir5124b miRNA miRNA MGP_AJ_T0099528.1 MGP_AJ_G0037494.1 mouse_genomes_project 14 111748118 111748218 + Gm23302 snRNA snRNA MGP_AJ_T0039627.1 MGP_AJ_G0021348.1 mouse_genomes_project 14 49285467 49293173 - MGP_AJ_P0039627 Gzmf protein_coding protein_coding MGP_AJ_T0006701.1 MGP_AJ_G0005532.1 mouse_genomes_project 14 44107730 44111172 + lincRNA lincRNA MGP_AJ_T0006702.1 MGP_AJ_G0005532.1 mouse_genomes_project 14 44107794 44111044 + lincRNA lincRNA MGP_AJ_T0038987.1 MGP_AJ_G0021152.1 mouse_genomes_project 14 37746416 37783430 - MGP_AJ_P0038987 Ero1l protein_coding protein_coding MGP_AJ_T0002659.1 MGP_AJ_G0002542.1 mouse_genomes_project 14 46962637 46963225 + MGP_AJ_P0002659 Trdv2-1 TR_V_gene TR_V_gene MGP_AJ_T0002660.1 MGP_AJ_G0002542.1 mouse_genomes_project 14 46962637 46963225 + MGP_AJ_P0002660 Trdv2-1 TR_V_gene TR_V_gene MGP_AJ_T0006726.1 MGP_AJ_G0005550.1 mouse_genomes_project 14 63469152 63481469 + Gm26908 lincRNA lincRNA MGP_AJ_T0102339.1 MGP_AJ_G0040081.1 mouse_genomes_project 14 43781912 43782375 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0002657.1 MGP_AJ_G0002541.1 mouse_genomes_project 14 46911180 46911792 + MGP_AJ_P0002657 Trdv1 TR_V_gene TR_V_gene MGP_AJ_T0002658.1 MGP_AJ_G0002541.1 mouse_genomes_project 14 46911180 46911792 + MGP_AJ_P0002658 Trdv1 TR_V_gene TR_V_gene MGP_AJ_T0002644.1 MGP_AJ_G0002532.1 mouse_genomes_project 14 46576519 46577123 + MGP_AJ_P0002644 TR_V_gene TR_V_gene MGP_AJ_T0040087.1 MGP_AJ_G0021521.1 mouse_genomes_project 14 67978124 67996131 + MGP_AJ_P0040087 Esd protein_coding protein_coding MGP_AJ_T0040088.1 MGP_AJ_G0021521.1 mouse_genomes_project 14 67978152 67988432 + Esd protein_coding retained_intron MGP_AJ_T0040089.1 MGP_AJ_G0021521.1 mouse_genomes_project 14 67978154 67985289 + Esd protein_coding processed_transcript MGP_AJ_T0040090.1 MGP_AJ_G0021521.1 mouse_genomes_project 14 67978190 67991398 + MGP_AJ_P0040090 Esd protein_coding protein_coding MGP_AJ_T0040091.1 MGP_AJ_G0021521.1 mouse_genomes_project 14 67978217 67995658 + MGP_AJ_P0040091 Esd protein_coding protein_coding MGP_AJ_T0040092.1 MGP_AJ_G0021521.1 mouse_genomes_project 14 67981735 67995535 + MGP_AJ_P0040092 Esd protein_coding protein_coding MGP_AJ_T0040093.1 MGP_AJ_G0021521.1 mouse_genomes_project 14 67981735 67995594 + MGP_AJ_P0040093 Esd protein_coding protein_coding MGP_AJ_T0040094.1 MGP_AJ_G0021521.1 mouse_genomes_project 14 67984276 67989381 + Esd protein_coding retained_intron MGP_AJ_T0040095.1 MGP_AJ_G0021521.1 mouse_genomes_project 14 67984339 67995565 + MGP_AJ_P0040095 Esd protein_coding protein_coding MGP_AJ_T0040315.1 MGP_AJ_G0021607.1 mouse_genomes_project 14 111295734 111323371 + MGP_AJ_P0040315 Gpr180 protein_coding protein_coding MGP_AJ_T0002663.1 MGP_AJ_G0002545.1 mouse_genomes_project 14 47101035 47101646 + MGP_AJ_P0002663 Trdv4 TR_V_gene TR_V_gene MGP_AJ_T0040156.1 MGP_AJ_G0021543.1 mouse_genomes_project 14 71079532 71083651 - MGP_AJ_P0040156 Gm1587 protein_coding protein_coding MGP_AJ_T0039629.1 MGP_AJ_G0021350.1 mouse_genomes_project 14 49338972 49342377 - MGP_AJ_P0039629 Gzmb protein_coding protein_coding MGP_AJ_T0039796.1 MGP_AJ_G0021416.1 mouse_genomes_project 14 56338707 56375120 - MGP_AJ_P0039796 Fdft1 protein_coding protein_coding MGP_AJ_T0039130.1 MGP_AJ_G0021195.1 mouse_genomes_project 14 42923297 42924248 - Olfr735 protein_coding transcribed_unprocessed_pseudogene MGP_AJ_T0039131.1 MGP_AJ_G0021195.1 mouse_genomes_project 14 42923297 42924362 - MGP_AJ_P0039131 Olfr735 protein_coding protein_coding MGP_AJ_T0039132.1 MGP_AJ_G0021195.1 mouse_genomes_project 14 42923700 42928340 - Olfr735 protein_coding processed_transcript MGP_AJ_T0099122.1 MGP_AJ_G0037092.1 mouse_genomes_project 14 60915666 60917608 - Gm20667 sense_overlapping sense_overlapping MGP_AJ_T0039427.1 MGP_AJ_G0021286.1 mouse_genomes_project 14 47900299 47905134 + MGP_AJ_P0039427 Bcl2l2 protein_coding protein_coding MGP_AJ_T0039428.1 MGP_AJ_G0021286.1 mouse_genomes_project 14 47900303 47900980 + Bcl2l2 protein_coding retained_intron MGP_AJ_T0039430.1 MGP_AJ_G0021286.1 mouse_genomes_project 14 47900378 47902452 + MGP_AJ_P0039430 Bcl2l2 protein_coding protein_coding MGP_AJ_T0039431.1 MGP_AJ_G0021286.1 mouse_genomes_project 14 47900429 47904995 + MGP_AJ_P0039431 Bcl2l2 protein_coding protein_coding MGP_AJ_T0038989.1 MGP_AJ_G0021154.1 mouse_genomes_project 14 37816294 37850712 + MGP_AJ_P0038989 protein_coding protein_coding MGP_AJ_T0040028.1 MGP_AJ_G0021507.1 mouse_genomes_project 14 63916240 63922021 - MGP_AJ_P0040028 Npm2 protein_coding protein_coding MGP_AJ_T0099526.1 MGP_AJ_G0037492.1 mouse_genomes_project 14 105201822 105201914 - Gm22764 snRNA snRNA MGP_AJ_T0038354.1 MGP_AJ_G0020975.1 mouse_genomes_project 14 12302265 12421322 - MGP_AJ_P0038354 Gng2 protein_coding protein_coding MGP_AJ_T0038355.1 MGP_AJ_G0020975.1 mouse_genomes_project 14 12305361 12421245 - MGP_AJ_P0038355 Gng2 protein_coding protein_coding MGP_AJ_T0038356.1 MGP_AJ_G0020975.1 mouse_genomes_project 14 12305361 12421700 - MGP_AJ_P0038356 Gng2 protein_coding protein_coding MGP_AJ_T0038357.1 MGP_AJ_G0020975.1 mouse_genomes_project 14 12305402 12421132 - MGP_AJ_P0038357 Gng2 protein_coding protein_coding MGP_AJ_T0038358.1 MGP_AJ_G0020975.1 mouse_genomes_project 14 12305445 12421257 - MGP_AJ_P0038358 Gng2 protein_coding protein_coding MGP_AJ_T0038359.1 MGP_AJ_G0020975.1 mouse_genomes_project 14 12305499 12420766 - MGP_AJ_P0038359 Gng2 protein_coding protein_coding MGP_AJ_T0012995.1 MGP_AJ_G0011090.1 mouse_genomes_project 14 25166249 25167260 + processed_pseudogene processed_pseudogene MGP_AJ_T0100785.1 MGP_AJ_G0038751.1 mouse_genomes_project 14 63690833 63690943 - Gm22725 snoRNA snoRNA MGP_AJ_T0010021.1 MGP_AJ_G0008143.1 mouse_genomes_project 14 108247168 108247255 + Mir19b-1 miRNA miRNA MGP_AJ_T0013044.1 MGP_AJ_G0011139.1 mouse_genomes_project 14 93079366 93079663 - processed_pseudogene processed_pseudogene MGP_AJ_T0006715.1 MGP_AJ_G0005544.1 mouse_genomes_project 14 55637527 55640761 - lincRNA lincRNA MGP_AJ_T0006716.1 MGP_AJ_G0005544.1 mouse_genomes_project 14 55638949 55654765 - lincRNA lincRNA MGP_AJ_T0038277.1 MGP_AJ_G0020951.1 mouse_genomes_project 14 6176332 6283987 - MGP_AJ_P0038277 Gm281 protein_coding protein_coding MGP_AJ_T0039823.1 MGP_AJ_G0021428.1 mouse_genomes_project 14 57289623 57299843 - MGP_AJ_P0039823 Prss55 protein_coding protein_coding MGP_AJ_T0039824.1 MGP_AJ_G0021428.1 mouse_genomes_project 14 57289630 57299800 - MGP_AJ_P0039824 Prss55 protein_coding protein_coding MGP_AJ_T0039825.1 MGP_AJ_G0021428.1 mouse_genomes_project 14 57293610 57304518 - Prss55 protein_coding processed_transcript MGP_AJ_T0038223.1 MGP_AJ_G0020933.1 mouse_genomes_project 14 276621 308771 - MGP_AJ_P0038223 Dnase1l3 protein_coding protein_coding MGP_AJ_T0038224.1 MGP_AJ_G0020933.1 mouse_genomes_project 14 288351 290825 - Dnase1l3 protein_coding processed_transcript MGP_AJ_T0006717.1 MGP_AJ_G0005545.1 mouse_genomes_project 14 55933640 56006258 + 4931440J10Rik lincRNA lincRNA MGP_AJ_T0003547.1 MGP_AJ_G0003221.1 mouse_genomes_project 14 47154641 47166570 - Gm43434 antisense antisense MGP_AJ_T0012973.1 MGP_AJ_G0011068.1 mouse_genomes_project 14 2191857 2192461 + processed_pseudogene processed_pseudogene MGP_AJ_T0006718.1 MGP_AJ_G0005546.1 mouse_genomes_project 14 56013233 56014532 - Gm26536 lincRNA lincRNA MGP_AJ_T0038607.1 MGP_AJ_G0021045.1 mouse_genomes_project 14 21257741 21273904 + MGP_AJ_P0038607 Lrtm1 protein_coding protein_coding MGP_AJ_T0002714.1 MGP_AJ_G0002586.1 mouse_genomes_project 14 45899164 45899735 + TR_V_pseudogene TR_V_pseudogene MGP_AJ_T0002527.1 MGP_AJ_G0002429.1 mouse_genomes_project 14 47204066 47204128 + MGP_AJ_P0002527 Traj35 TR_J_gene TR_J_gene MGP_AJ_T0039879.1 MGP_AJ_G0021452.1 mouse_genomes_project 14 59379198 59436585 - MGP_AJ_P0039879 Ptk2b protein_coding unknown_likely_coding MGP_AJ_T0039880.1 MGP_AJ_G0021452.1 mouse_genomes_project 14 59379200 59396217 - MGP_AJ_P0039880 Ptk2b protein_coding protein_coding MGP_AJ_T0039881.1 MGP_AJ_G0021452.1 mouse_genomes_project 14 59379200 59503229 - MGP_AJ_P0039881 Ptk2b protein_coding protein_coding MGP_AJ_T0039882.1 MGP_AJ_G0021452.1 mouse_genomes_project 14 59379205 59386610 - Ptk2b protein_coding retained_intron MGP_AJ_T0039883.1 MGP_AJ_G0021452.1 mouse_genomes_project 14 59379782 59503159 - MGP_AJ_P0039883 Ptk2b protein_coding protein_coding MGP_AJ_T0039884.1 MGP_AJ_G0021452.1 mouse_genomes_project 14 59382208 59389834 - Ptk2b protein_coding retained_intron MGP_AJ_T0039885.1 MGP_AJ_G0021452.1 mouse_genomes_project 14 59398660 59503169 - Ptk2b protein_coding retained_intron MGP_AJ_T0002597.1 MGP_AJ_G0002493.1 mouse_genomes_project 14 45478422 45478867 + MGP_AJ_P0002597 Trav6-1 TR_V_gene TR_V_gene MGP_AJ_T0009998.1 MGP_AJ_G0008120.1 mouse_genomes_project 14 57802066 57802153 + Mir3078 miRNA miRNA MGP_AJ_T0100768.1 MGP_AJ_G0038734.1 mouse_genomes_project 14 29464995 29465128 + Gm22469 snoRNA snoRNA MGP_AJ_T0039006.1 MGP_AJ_G0021158.1 mouse_genomes_project 14 38858130 38862139 + Gm15217 protein_coding processed_transcript MGP_AJ_T0039007.1 MGP_AJ_G0021158.1 mouse_genomes_project 14 38858183 38862329 + MGP_AJ_P0039007 Gm15217 protein_coding protein_coding MGP_AJ_T0039008.1 MGP_AJ_G0021158.1 mouse_genomes_project 14 38859841 38862089 + Gm15217 protein_coding processed_transcript MGP_AJ_T0013018.1 MGP_AJ_G0011113.1 mouse_genomes_project 14 47837360 47837790 - processed_pseudogene processed_pseudogene MGP_AJ_T0002591.1 MGP_AJ_G0002489.1 mouse_genomes_project 14 45257884 45258861 + MGP_AJ_P0002591 Trav1 TR_V_gene TR_V_gene MGP_AJ_T0002592.1 MGP_AJ_G0002489.1 mouse_genomes_project 14 45257923 45258861 + MGP_AJ_P0002592 Trav1 TR_V_gene TR_V_gene MGP_AJ_T0039851.1 MGP_AJ_G0021440.1 mouse_genomes_project 14 58749687 58812580 - MGP_AJ_P0039851 Elp3 protein_coding protein_coding MGP_AJ_T0038466.1 MGP_AJ_G0021007.1 mouse_genomes_project 14 14446853 14452460 - MGP_AJ_P0038466 Zfp503 protein_coding protein_coding MGP_AJ_T0102336.1 MGP_AJ_G0040078.1 mouse_genomes_project 14 42995428 42995711 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0002721.1 MGP_AJ_G0002593.1 mouse_genomes_project 14 46958077 46958696 + TR_V_pseudogene TR_V_pseudogene MGP_AJ_T0038842.1 MGP_AJ_G0021093.1 mouse_genomes_project 14 24673508 24732035 - MGP_AJ_P0038842 Chat protein_coding protein_coding MGP_AJ_T0017382.1 MGP_AJ_G0015244.1 mouse_genomes_project 14 54770426 54851179 - Dleu2 processed_transcript lincRNA MGP_AJ_T0017383.1 MGP_AJ_G0015244.1 mouse_genomes_project 14 54770621 54851120 - Dleu2 processed_transcript lincRNA MGP_AJ_T0017384.1 MGP_AJ_G0015244.1 mouse_genomes_project 14 54771059 54851108 - Dleu2 processed_transcript lincRNA MGP_AJ_T0017385.1 MGP_AJ_G0015244.1 mouse_genomes_project 14 54771176 54817636 - Dleu2 processed_transcript lincRNA MGP_AJ_T0017386.1 MGP_AJ_G0015244.1 mouse_genomes_project 14 54771311 54817601 - Dleu2 processed_transcript lincRNA MGP_AJ_T0017387.1 MGP_AJ_G0015244.1 mouse_genomes_project 14 54786140 54787697 - Dleu2 processed_transcript TEC MGP_AJ_T0017388.1 MGP_AJ_G0015244.1 mouse_genomes_project 14 54787418 54851131 - Dleu2 processed_transcript lincRNA MGP_AJ_T0017389.1 MGP_AJ_G0015244.1 mouse_genomes_project 14 54793128 54817576 - Dleu2 processed_transcript lincRNA MGP_AJ_T0017390.1 MGP_AJ_G0015244.1 mouse_genomes_project 14 54795740 54800709 - Dleu2 processed_transcript TEC MGP_AJ_T0017391.1 MGP_AJ_G0015244.1 mouse_genomes_project 14 54796551 54851131 - Dleu2 processed_transcript lincRNA MGP_AJ_T0017392.1 MGP_AJ_G0015244.1 mouse_genomes_project 14 54801115 54817436 - Dleu2 processed_transcript lincRNA MGP_AJ_T0017393.1 MGP_AJ_G0015244.1 mouse_genomes_project 14 54801165 54817636 - Dleu2 processed_transcript lincRNA MGP_AJ_T0017394.1 MGP_AJ_G0015244.1 mouse_genomes_project 14 54804040 54851120 - Dleu2 processed_transcript lincRNA MGP_AJ_T0017395.1 MGP_AJ_G0015244.1 mouse_genomes_project 14 54812155 54851119 - Dleu2 processed_transcript lincRNA MGP_AJ_T0017396.1 MGP_AJ_G0015244.1 mouse_genomes_project 14 54812229 54851131 - Dleu2 processed_transcript lincRNA MGP_AJ_T0003569.1 MGP_AJ_G0003238.1 mouse_genomes_project 14 62418331 62425481 - 1700092C10Rik antisense antisense MGP_AJ_T0100783.1 MGP_AJ_G0038749.1 mouse_genomes_project 14 60811404 60811536 + Gm24981 snoRNA snoRNA MGP_AJ_T0039039.1 MGP_AJ_G0021169.1 mouse_genomes_project 14 39870551 39884828 + MGP_AJ_P0039039 Lgals3 protein_coding protein_coding MGP_AJ_T0039040.1 MGP_AJ_G0021169.1 mouse_genomes_project 14 39877523 39890547 + MGP_AJ_P0039040 Lgals3 protein_coding protein_coding MGP_AJ_T0039041.1 MGP_AJ_G0021169.1 mouse_genomes_project 14 39877609 39890183 + MGP_AJ_P0039041 Lgals3 protein_coding protein_coding MGP_AJ_T0039042.1 MGP_AJ_G0021169.1 mouse_genomes_project 14 39877626 39884727 + MGP_AJ_P0039042 Lgals3 protein_coding protein_coding MGP_AJ_T0039043.1 MGP_AJ_G0021169.1 mouse_genomes_project 14 39877684 39890178 + MGP_AJ_P0039043 Lgals3 protein_coding protein_coding MGP_AJ_T0039125.1 MGP_AJ_G0021190.1 mouse_genomes_project 14 42778127 42779084 - MGP_AJ_P0039125 protein_coding protein_coding MGP_AJ_T0013037.1 MGP_AJ_G0011132.1 mouse_genomes_project 14 89510234 89511056 + processed_pseudogene processed_pseudogene MGP_AJ_T0039127.1 MGP_AJ_G0021192.1 mouse_genomes_project 14 42859673 42860717 - MGP_AJ_P0039127 Olfr732 protein_coding protein_coding MGP_AJ_T0040223.1 MGP_AJ_G0021576.1 mouse_genomes_project 14 92536273 92550988 + MGP_AJ_P0040223 Klf5 protein_coding protein_coding MGP_AJ_T0038748.1 MGP_AJ_G0021072.1 mouse_genomes_project 14 23491239 23504787 - MGP_AJ_P0038748 Phf7 protein_coding protein_coding MGP_AJ_T0038572.1 MGP_AJ_G0021032.1 mouse_genomes_project 14 18842705 18861656 + MGP_AJ_P0038572 Arf4 protein_coding protein_coding MGP_AJ_T0038573.1 MGP_AJ_G0021032.1 mouse_genomes_project 14 18842793 18861212 + MGP_AJ_P0038573 Arf4 protein_coding protein_coding MGP_AJ_T0038574.1 MGP_AJ_G0021032.1 mouse_genomes_project 14 18842857 18861199 + MGP_AJ_P0038574 Arf4 protein_coding nonsense_mediated_decay MGP_AJ_T0038575.1 MGP_AJ_G0021032.1 mouse_genomes_project 14 18842884 18861206 + Arf4 protein_coding processed_transcript MGP_AJ_T0038576.1 MGP_AJ_G0021032.1 mouse_genomes_project 14 18857408 18858255 + Arf4 protein_coding retained_intron MGP_AJ_T0038577.1 MGP_AJ_G0021032.1 mouse_genomes_project 14 18857528 18869177 + MGP_AJ_P0038577 Arf4 protein_coding nonsense_mediated_decay MGP_AJ_T0040114.1 MGP_AJ_G0021528.1 mouse_genomes_project 14 68711329 68781968 + MGP_AJ_P0040114 Siah3 protein_coding protein_coding MGP_AJ_T0038683.1 MGP_AJ_G0021063.1 mouse_genomes_project 14 23255941 23266148 + MGP_AJ_P0038683 Glt8d1 protein_coding unknown_likely_coding MGP_AJ_T0038583.1 MGP_AJ_G0021035.1 mouse_genomes_project 14 19093013 19114224 + MGP_AJ_P0038583 Asb14 protein_coding protein_coding MGP_AJ_T0038584.1 MGP_AJ_G0021035.1 mouse_genomes_project 14 19093058 19113384 + MGP_AJ_P0038584 Asb14 protein_coding protein_coding MGP_AJ_T0038585.1 MGP_AJ_G0021035.1 mouse_genomes_project 14 19093068 19099368 + Asb14 protein_coding processed_transcript MGP_AJ_T0038586.1 MGP_AJ_G0021035.1 mouse_genomes_project 14 19093076 19101568 + MGP_AJ_P0038586 Asb14 protein_coding nonsense_mediated_decay MGP_AJ_T0038587.1 MGP_AJ_G0021035.1 mouse_genomes_project 14 19101517 19114225 + MGP_AJ_P0038587 Asb14 protein_coding nonsense_mediated_decay MGP_AJ_T0039723.1 MGP_AJ_G0021385.1 mouse_genomes_project 14 52736881 52773909 - MGP_AJ_P0039723 Cdadc1 protein_coding protein_coding MGP_AJ_T0039724.1 MGP_AJ_G0021385.1 mouse_genomes_project 14 52736881 52773909 - MGP_AJ_P0039724 Cdadc1 protein_coding protein_coding MGP_AJ_T0039725.1 MGP_AJ_G0021385.1 mouse_genomes_project 14 52740479 52773909 - MGP_AJ_P0039725 Cdadc1 protein_coding protein_coding MGP_AJ_T0039726.1 MGP_AJ_G0021385.1 mouse_genomes_project 14 52743717 52773909 - MGP_AJ_P0039726 Cdadc1 protein_coding protein_coding MGP_AJ_T0038770.1 MGP_AJ_G0021080.1 mouse_genomes_project 14 23809588 23900876 - MGP_AJ_P0038770 Hacl1 protein_coding nonsense_mediated_decay MGP_AJ_T0038774.1 MGP_AJ_G0021080.1 mouse_genomes_project 14 23856225 23900942 - MGP_AJ_P0038774 Hacl1 protein_coding nonsense_mediated_decay MGP_AJ_T0038775.1 MGP_AJ_G0021080.1 mouse_genomes_project 14 23864726 23900962 - MGP_AJ_P0038775 Hacl1 protein_coding protein_coding MGP_AJ_T0038776.1 MGP_AJ_G0021080.1 mouse_genomes_project 14 23865163 23871704 - Hacl1 protein_coding processed_transcript MGP_AJ_T0038777.1 MGP_AJ_G0021080.1 mouse_genomes_project 14 23865467 23867721 - Hacl1 protein_coding processed_transcript MGP_AJ_T0038778.1 MGP_AJ_G0021080.1 mouse_genomes_project 14 23865509 23900876 - MGP_AJ_P0038778 Hacl1 protein_coding nonsense_mediated_decay MGP_AJ_T0038779.1 MGP_AJ_G0021080.1 mouse_genomes_project 14 23865509 23900876 - MGP_AJ_P0038779 Hacl1 protein_coding nonsense_mediated_decay MGP_AJ_T0038780.1 MGP_AJ_G0021080.1 mouse_genomes_project 14 23865509 23900876 - MGP_AJ_P0038780 Hacl1 protein_coding protein_coding MGP_AJ_T0038781.1 MGP_AJ_G0021080.1 mouse_genomes_project 14 23865509 23900910 - MGP_AJ_P0038781 Hacl1 protein_coding protein_coding MGP_AJ_T0038782.1 MGP_AJ_G0021080.1 mouse_genomes_project 14 23883812 23901170 - MGP_AJ_P0038782 Hacl1 protein_coding nonsense_mediated_decay MGP_AJ_T0038783.1 MGP_AJ_G0021080.1 mouse_genomes_project 14 23889756 23901255 - MGP_AJ_P0038783 Hacl1 protein_coding nonsense_mediated_decay MGP_AJ_T0038784.1 MGP_AJ_G0021080.1 mouse_genomes_project 14 23890568 23900944 - Hacl1 protein_coding retained_intron MGP_AJ_T0038785.1 MGP_AJ_G0021080.1 mouse_genomes_project 14 23895493 23900909 - Hacl1 protein_coding retained_intron MGP_AJ_T0038786.1 MGP_AJ_G0021080.1 mouse_genomes_project 14 23895632 23901284 - Hacl1 protein_coding retained_intron MGP_AJ_T0000926.1 MGP_AJ_G0000860.1 mouse_genomes_project 14 92993644 93038013 - TEC TEC MGP_AJ_T0039761.1 MGP_AJ_G0021398.1 mouse_genomes_project 14 54469889 54472073 + MGP_AJ_P0039761 Arl11 protein_coding protein_coding MGP_AJ_T0006733.1 MGP_AJ_G0005556.1 mouse_genomes_project 14 96182056 96186365 + Gm26778 lincRNA lincRNA MGP_AJ_T0013006.1 MGP_AJ_G0011101.1 mouse_genomes_project 14 43380506 43381611 + processed_pseudogene processed_pseudogene MGP_AJ_T0013003.1 MGP_AJ_G0011098.1 mouse_genomes_project 14 38517734 38519089 + processed_pseudogene processed_pseudogene MGP_AJ_T0100780.1 MGP_AJ_G0038746.1 mouse_genomes_project 14 55840682 55840841 + Gm25162 snoRNA snoRNA MGP_AJ_T0038893.1 MGP_AJ_G0021116.1 mouse_genomes_project 14 26471476 26478669 - MGP_AJ_P0038893 Gprin2 protein_coding protein_coding MGP_AJ_T0039155.1 MGP_AJ_G0021215.1 mouse_genomes_project 14 43507637 43509152 - MGP_AJ_P0039155 A930018M24Rik protein_coding protein_coding MGP_AJ_T0098403.1 MGP_AJ_G0036387.1 mouse_genomes_project 14 96182056 96186365 - pseudogene pseudogene MGP_AJ_T0039952.1 MGP_AJ_G0021478.1 mouse_genomes_project 14 62547386 62551304 - MGP_AJ_P0039952 Synb protein_coding protein_coding MGP_AJ_T0017430.1 MGP_AJ_G0015261.1 mouse_genomes_project 14 115709355 115712598 - 2610035F20Rik processed_transcript retained_intron MGP_AJ_T0017431.1 MGP_AJ_G0015261.1 mouse_genomes_project 14 115709448 115714218 - 2610035F20Rik processed_transcript processed_transcript MGP_AJ_T0013041.1 MGP_AJ_G0011136.1 mouse_genomes_project 14 92528796 92529229 - processed_pseudogene processed_pseudogene MGP_AJ_T0002510.1 MGP_AJ_G0002414.1 mouse_genomes_project 14 47185652 47185718 + MGP_AJ_P0002510 Traj52 TR_J_gene TR_J_gene MGP_AJ_T0039197.1 MGP_AJ_G0021234.1 mouse_genomes_project 14 44135958 44142392 + MGP_AJ_P0039197 protein_coding protein_coding MGP_AJ_T0040370.1 MGP_AJ_G0021634.1 mouse_genomes_project 14 115771005 115825769 + Pcca protein_coding retained_intron MGP_AJ_T0040371.1 MGP_AJ_G0021634.1 mouse_genomes_project 14 115771012 115860009 + MGP_AJ_P0040371 Pcca protein_coding protein_coding MGP_AJ_T0040372.1 MGP_AJ_G0021634.1 mouse_genomes_project 14 115771020 116133149 + MGP_AJ_P0040372 Pcca protein_coding protein_coding MGP_AJ_T0040373.1 MGP_AJ_G0021634.1 mouse_genomes_project 14 115771026 115889208 + MGP_AJ_P0040373 Pcca protein_coding protein_coding MGP_AJ_T0040374.1 MGP_AJ_G0021634.1 mouse_genomes_project 14 115825475 116133033 + MGP_AJ_P0040374 Pcca protein_coding nonsense_mediated_decay MGP_AJ_T0040375.1 MGP_AJ_G0021634.1 mouse_genomes_project 14 115845598 115906300 + Pcca protein_coding processed_transcript MGP_AJ_T0040376.1 MGP_AJ_G0021634.1 mouse_genomes_project 14 115958222 115981154 + MGP_AJ_P0040376 Pcca protein_coding nonsense_mediated_decay MGP_AJ_T0040377.1 MGP_AJ_G0021634.1 mouse_genomes_project 14 115958248 116133030 + MGP_AJ_P0040377 Pcca protein_coding nonsense_mediated_decay MGP_AJ_T0040378.1 MGP_AJ_G0021634.1 mouse_genomes_project 14 115958312 116057137 + Pcca protein_coding processed_transcript MGP_AJ_T0040379.1 MGP_AJ_G0021634.1 mouse_genomes_project 14 115981058 116057483 + Pcca protein_coding retained_intron MGP_AJ_T0040380.1 MGP_AJ_G0021634.1 mouse_genomes_project 14 116033408 116133025 + MGP_AJ_P0040380 Pcca protein_coding protein_coding MGP_AJ_T0040382.1 MGP_AJ_G0021634.1 mouse_genomes_project 14 116119138 116134305 + Pcca protein_coding processed_transcript MGP_AJ_T0040383.1 MGP_AJ_G0021634.1 mouse_genomes_project 14 116130107 116133033 + Pcca protein_coding retained_intron MGP_AJ_T0002717.1 MGP_AJ_G0002589.1 mouse_genomes_project 14 46141662 46141931 + TR_V_pseudogene TR_V_pseudogene MGP_AJ_T0038971.1 MGP_AJ_G0021147.1 mouse_genomes_project 14 33457744 33470730 - MGP_AJ_P0038971 Sftpd protein_coding protein_coding MGP_AJ_T0003536.1 MGP_AJ_G0003211.1 mouse_genomes_project 14 26788440 26789410 + Gm17110 antisense antisense MGP_AJ_T0000918.1 MGP_AJ_G0000852.1 mouse_genomes_project 14 62464053 62467614 - TEC TEC MGP_AJ_T0017422.1 MGP_AJ_G0015256.1 mouse_genomes_project 14 108588949 108601626 - 4930505G20Rik processed_transcript processed_transcript MGP_AJ_T0100810.1 MGP_AJ_G0038776.1 mouse_genomes_project 14 111461537 111461665 + Gm23669 snoRNA snoRNA MGP_AJ_T0006738.1 MGP_AJ_G0005560.1 mouse_genomes_project 14 111525717 111546548 + Gm26791 lincRNA lincRNA MGP_AJ_T0003564.1 MGP_AJ_G0003233.1 mouse_genomes_project 14 56703678 56710059 + Gm17232 antisense antisense MGP_AJ_T0017413.1 MGP_AJ_G0015252.1 mouse_genomes_project 14 71354445 71374537 + Gm19301 processed_transcript processed_transcript MGP_AJ_T0017432.1 MGP_AJ_G0015262.1 mouse_genomes_project 14 116156162 116170822 + 4930594M22Rik processed_transcript processed_transcript MGP_AJ_T0017433.1 MGP_AJ_G0015262.1 mouse_genomes_project 14 116156199 116172574 + 4930594M22Rik processed_transcript processed_transcript MGP_AJ_T0017434.1 MGP_AJ_G0015262.1 mouse_genomes_project 14 116156207 116180601 + 4930594M22Rik processed_transcript processed_transcript MGP_AJ_T0098588.1 MGP_AJ_G0036572.1 mouse_genomes_project 14 70813140 70813249 + n-R5s48 rRNA rRNA MGP_AJ_T0000919.1 MGP_AJ_G0000853.1 mouse_genomes_project 14 62533642 62539123 - TEC TEC MGP_AJ_T0013051.1 MGP_AJ_G0011146.1 mouse_genomes_project 14 108749831 108750431 - processed_pseudogene processed_pseudogene MGP_AJ_T0002636.1 MGP_AJ_G0002527.1 mouse_genomes_project 14 46251106 46251614 + MGP_AJ_P0002636 TR_V_gene TR_V_gene MGP_AJ_T0039120.1 MGP_AJ_G0021185.1 mouse_genomes_project 14 42467953 42471179 - MGP_AJ_P0039120 protein_coding protein_coding MGP_AJ_T0039495.1 MGP_AJ_G0021307.1 mouse_genomes_project 14 48606097 48606562 - MGP_AJ_P0039495 A730061H03Rik protein_coding protein_coding MGP_AJ_T0039044.1 MGP_AJ_G0021170.1 mouse_genomes_project 14 39892186 39898676 - MGP_AJ_P0039044 Dlgap5 protein_coding protein_coding MGP_AJ_T0039045.1 MGP_AJ_G0021170.1 mouse_genomes_project 14 39892408 39922892 - MGP_AJ_P0039045 Dlgap5 protein_coding protein_coding MGP_AJ_T0039046.1 MGP_AJ_G0021170.1 mouse_genomes_project 14 39893124 39922913 - Dlgap5 protein_coding retained_intron MGP_AJ_T0039047.1 MGP_AJ_G0021170.1 mouse_genomes_project 14 39894244 39922943 - Dlgap5 protein_coding retained_intron MGP_AJ_T0039048.1 MGP_AJ_G0021170.1 mouse_genomes_project 14 39898271 39900388 - Dlgap5 protein_coding retained_intron MGP_AJ_T0039049.1 MGP_AJ_G0021170.1 mouse_genomes_project 14 39903127 39916591 - MGP_AJ_P0039049 Dlgap5 protein_coding protein_coding MGP_AJ_T0039050.1 MGP_AJ_G0021170.1 mouse_genomes_project 14 39918332 39922936 - Dlgap5 protein_coding retained_intron MGP_AJ_T0039051.1 MGP_AJ_G0021170.1 mouse_genomes_project 14 39918864 39921249 - Dlgap5 protein_coding processed_transcript MGP_AJ_T0039195.1 MGP_AJ_G0021232.1 mouse_genomes_project 14 43825365 43825928 + MGP_AJ_P0039195 Ear14 protein_coding protein_coding MGP_AJ_T0003589.1 MGP_AJ_G0003251.1 mouse_genomes_project 14 117192261 117193665 + Gm28932 antisense antisense MGP_AJ_T0038364.1 MGP_AJ_G0020980.1 mouse_genomes_project 14 12769997 12798508 - MGP_AJ_P0038364 Ecd protein_coding protein_coding MGP_AJ_T0040098.1 MGP_AJ_G0021523.1 mouse_genomes_project 14 68263699 68301639 + MGP_AJ_P0040098 5031414D18Rik protein_coding protein_coding MGP_AJ_T0013021.1 MGP_AJ_G0011116.1 mouse_genomes_project 14 49955213 49957045 + processed_pseudogene processed_pseudogene MGP_AJ_T0100787.1 MGP_AJ_G0038753.1 mouse_genomes_project 14 69236773 69236907 - Gm25517 snoRNA snoRNA MGP_AJ_T0038248.1 MGP_AJ_G0020943.1 mouse_genomes_project 14 1858617 2173799 - MGP_AJ_P0038248 Fhit protein_coding unknown_likely_coding MGP_AJ_T0038249.1 MGP_AJ_G0020943.1 mouse_genomes_project 14 1858622 2767541 - MGP_AJ_P0038249 Fhit protein_coding protein_coding MGP_AJ_T0038250.1 MGP_AJ_G0020943.1 mouse_genomes_project 14 1858630 3467318 - MGP_AJ_P0038250 Fhit protein_coding protein_coding MGP_AJ_T0038251.1 MGP_AJ_G0020943.1 mouse_genomes_project 14 1858630 3467315 - MGP_AJ_P0038251 Fhit protein_coding protein_coding MGP_AJ_T0038252.1 MGP_AJ_G0020943.1 mouse_genomes_project 14 1858923 2734304 - MGP_AJ_P0038252 Fhit protein_coding protein_coding MGP_AJ_T0038253.1 MGP_AJ_G0020943.1 mouse_genomes_project 14 1881727 3430848 - MGP_AJ_P0038253 Fhit protein_coding protein_coding MGP_AJ_T0038254.1 MGP_AJ_G0020943.1 mouse_genomes_project 14 2066331 3430436 - Fhit protein_coding retained_intron MGP_AJ_T0038255.1 MGP_AJ_G0020943.1 mouse_genomes_project 14 2066438 3430819 - MGP_AJ_P0038255 Fhit protein_coding protein_coding MGP_AJ_T0038256.1 MGP_AJ_G0020943.1 mouse_genomes_project 14 2171543 3467318 - MGP_AJ_P0038256 Fhit protein_coding protein_coding MGP_AJ_T0040316.1 MGP_AJ_G0021608.1 mouse_genomes_project 14 111393057 111396856 - MGP_AJ_P0040316 Sox21 protein_coding protein_coding MGP_AJ_T0002602.1 MGP_AJ_G0002497.1 mouse_genomes_project 14 45599387 45599867 + MGP_AJ_P0002602 Trav6d-4 TR_V_gene TR_V_gene MGP_AJ_T0002603.1 MGP_AJ_G0002497.1 mouse_genomes_project 14 45599418 45599867 + MGP_AJ_P0002603 Trav6d-4 TR_V_gene TR_V_gene MGP_AJ_T0039886.1 MGP_AJ_G0021453.1 mouse_genomes_project 14 59519283 59533677 + MGP_AJ_P0039886 Trim35 protein_coding protein_coding MGP_AJ_T0039887.1 MGP_AJ_G0021453.1 mouse_genomes_project 14 59519342 59530550 + MGP_AJ_P0039887 Trim35 protein_coding protein_coding MGP_AJ_T0098593.1 MGP_AJ_G0036577.1 mouse_genomes_project 14 111994913 111995036 - n-R5s51 rRNA rRNA MGP_AJ_T0102333.1 MGP_AJ_G0040075.1 mouse_genomes_project 14 28324012 28325455 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0003561.1 MGP_AJ_G0003232.1 mouse_genomes_project 14 54453365 54465472 - 1700109G14Rik antisense antisense MGP_AJ_T0003562.1 MGP_AJ_G0003232.1 mouse_genomes_project 14 54455055 54477642 - 1700109G14Rik antisense antisense MGP_AJ_T0003563.1 MGP_AJ_G0003232.1 mouse_genomes_project 14 54464962 54465446 - 1700109G14Rik antisense antisense MGP_AJ_T0039128.1 MGP_AJ_G0021193.1 mouse_genomes_project 14 42877509 42878503 - MGP_AJ_P0039128 Olfr733 protein_coding protein_coding MGP_AJ_T0040353.1 MGP_AJ_G0021623.1 mouse_genomes_project 14 114750672 114911413 - MGP_AJ_P0040353 Dock9 protein_coding protein_coding MGP_AJ_T0040354.1 MGP_AJ_G0021623.1 mouse_genomes_project 14 114750672 115012558 - MGP_AJ_P0040354 Dock9 protein_coding protein_coding MGP_AJ_T0040355.1 MGP_AJ_G0021623.1 mouse_genomes_project 14 114752136 114801384 - MGP_AJ_P0040355 Dock9 protein_coding unknown_likely_coding MGP_AJ_T0040356.1 MGP_AJ_G0021623.1 mouse_genomes_project 14 114803768 114953305 - MGP_AJ_P0040356 Dock9 protein_coding unknown_likely_coding MGP_AJ_T0039199.1 MGP_AJ_G0021236.1 mouse_genomes_project 14 44555713 44563929 - MGP_AJ_P0039199 Ang4 protein_coding protein_coding MGP_AJ_T0040346.1 MGP_AJ_G0021619.1 mouse_genomes_project 14 114107715 114144679 + MGP_AJ_P0040346 Ipo5 protein_coding protein_coding MGP_AJ_T0002525.1 MGP_AJ_G0002427.1 mouse_genomes_project 14 47200864 47200926 + MGP_AJ_P0002525 Traj38 TR_J_gene TR_J_gene MGP_AJ_T0002629.1 MGP_AJ_G0002522.1 mouse_genomes_project 14 46036084 46036634 + MGP_AJ_P0002629 TR_V_gene TR_V_gene MGP_AJ_T0039441.1 MGP_AJ_G0021291.1 mouse_genomes_project 14 47950368 47953510 + MGP_AJ_P0039441 Il25 protein_coding protein_coding MGP_AJ_T0002541.1 MGP_AJ_G0002443.1 mouse_genomes_project 14 47219013 47219070 + MGP_AJ_P0002541 Traj21 TR_J_gene TR_J_gene MGP_AJ_T0038280.1 MGP_AJ_G0020954.1 mouse_genomes_project 14 6488846 6497603 - MGP_AJ_P0038280 Psmd6 protein_coding protein_coding MGP_AJ_T0038281.1 MGP_AJ_G0020954.1 mouse_genomes_project 14 6490573 6493213 - Psmd6 protein_coding retained_intron MGP_AJ_T0038282.1 MGP_AJ_G0020954.1 mouse_genomes_project 14 6492857 6494010 - Psmd6 protein_coding retained_intron MGP_AJ_T0038283.1 MGP_AJ_G0020954.1 mouse_genomes_project 14 6496290 6497552 - Psmd6 protein_coding retained_intron MGP_AJ_T0040283.1 MGP_AJ_G0021592.1 mouse_genomes_project 14 97656072 97662299 - MGP_AJ_P0040283 Pou4f1 protein_coding protein_coding MGP_AJ_T0040284.1 MGP_AJ_G0021592.1 mouse_genomes_project 14 97658369 97659665 - Pou4f1 protein_coding processed_transcript MGP_AJ_T0039854.1 MGP_AJ_G0021442.1 mouse_genomes_project 14 58887135 58986353 + MGP_AJ_P0039854 Scara5 protein_coding protein_coding MGP_AJ_T0039855.1 MGP_AJ_G0021442.1 mouse_genomes_project 14 58887169 58966523 + MGP_AJ_P0039855 Scara5 protein_coding protein_coding MGP_AJ_T0039856.1 MGP_AJ_G0021442.1 mouse_genomes_project 14 58897817 58966371 + Scara5 protein_coding processed_transcript MGP_AJ_T0002576.1 MGP_AJ_G0002476.1 mouse_genomes_project 14 47182174 47182228 + TR_J_pseudogene TR_J_pseudogene MGP_AJ_T0009996.1 MGP_AJ_G0008118.1 mouse_genomes_project 14 56936705 56936784 + Mir598 miRNA miRNA MGP_AJ_T0039993.1 MGP_AJ_G0021493.1 mouse_genomes_project 14 63481707 63554216 - MGP_AJ_P0039993 Ppp3cc protein_coding protein_coding MGP_AJ_T0013043.1 MGP_AJ_G0011138.1 mouse_genomes_project 14 92873154 92874638 - processed_pseudogene processed_pseudogene MGP_AJ_T0040130.1 MGP_AJ_G0021537.1 mouse_genomes_project 14 69378466 69404955 + MGP_AJ_P0040130 Nufip1 protein_coding protein_coding MGP_AJ_T0002595.1 MGP_AJ_G0002491.1 mouse_genomes_project 14 45424905 45425454 + MGP_AJ_P0002595 Trav3-1 TR_V_gene TR_V_gene MGP_AJ_T0002664.1 MGP_AJ_G0002546.1 mouse_genomes_project 14 47168890 47169523 - MGP_AJ_P0002664 Trdv5 TR_V_gene TR_V_gene MGP_AJ_T0000922.1 MGP_AJ_G0000856.1 mouse_genomes_project 14 64646681 64647221 - TEC TEC MGP_AJ_T0038660.1 MGP_AJ_G0021057.1 mouse_genomes_project 14 23132528 23134883 + MGP_AJ_P0038660 Mustn1 protein_coding protein_coding MGP_AJ_T0040397.1 MGP_AJ_G0021637.1 mouse_genomes_project 14 116529140 116868642 - MGP_AJ_P0040397 Nalcn protein_coding protein_coding MGP_AJ_T0040168.1 MGP_AJ_G0021551.1 mouse_genomes_project 14 72478245 72513666 - MGP_AJ_P0040168 Zfp957 protein_coding protein_coding MGP_AJ_T0040169.1 MGP_AJ_G0021551.1 mouse_genomes_project 14 72478247 72490260 - MGP_AJ_P0040169 Zfp957 protein_coding protein_coding MGP_AJ_T0040170.1 MGP_AJ_G0021551.1 mouse_genomes_project 14 72489313 72513739 - Zfp957 protein_coding retained_intron MGP_AJ_T0099500.1 MGP_AJ_G0037466.1 mouse_genomes_project 14 48733603 48733687 - Gm25887 snRNA snRNA MGP_AJ_T0039918.1 MGP_AJ_G0021462.1 mouse_genomes_project 14 60465052 60666728 + MGP_AJ_P0039918 Ebf2 protein_coding protein_coding MGP_AJ_T0039919.1 MGP_AJ_G0021462.1 mouse_genomes_project 14 60465346 60667868 + MGP_AJ_P0039919 Ebf2 protein_coding protein_coding MGP_AJ_T0039920.1 MGP_AJ_G0021462.1 mouse_genomes_project 14 60465363 60468274 + Ebf2 protein_coding retained_intron MGP_AJ_T0039921.1 MGP_AJ_G0021462.1 mouse_genomes_project 14 60466404 60665638 + MGP_AJ_P0039921 Ebf2 protein_coding protein_coding MGP_AJ_T0039978.1 MGP_AJ_G0021490.1 mouse_genomes_project 14 63417648 63422746 - MGP_AJ_P0039978 9930012K11Rik protein_coding protein_coding MGP_AJ_T0039979.1 MGP_AJ_G0021490.1 mouse_genomes_project 14 63417648 63422746 - MGP_AJ_P0039979 9930012K11Rik protein_coding protein_coding MGP_AJ_T0039980.1 MGP_AJ_G0021490.1 mouse_genomes_project 14 63417651 63420162 - 9930012K11Rik protein_coding retained_intron MGP_AJ_T0039981.1 MGP_AJ_G0021490.1 mouse_genomes_project 14 63418141 63419711 - MGP_AJ_P0039981 9930012K11Rik protein_coding nonsense_mediated_decay MGP_AJ_T0039982.1 MGP_AJ_G0021490.1 mouse_genomes_project 14 63418274 63420054 - 9930012K11Rik protein_coding retained_intron MGP_AJ_T0038225.1 MGP_AJ_G0020934.1 mouse_genomes_project 14 317062 371555 + MGP_AJ_P0038225 Abhd6 protein_coding protein_coding MGP_AJ_T0038226.1 MGP_AJ_G0020934.1 mouse_genomes_project 14 317126 370861 + MGP_AJ_P0038226 Abhd6 protein_coding protein_coding MGP_AJ_T0039463.1 MGP_AJ_G0021299.1 mouse_genomes_project 14 48119004 48126961 - MGP_AJ_P0039463 Ap1g2 protein_coding nonsense_mediated_decay MGP_AJ_T0039464.1 MGP_AJ_G0021299.1 mouse_genomes_project 14 48119276 48119815 - Ap1g2 protein_coding retained_intron MGP_AJ_T0039465.1 MGP_AJ_G0021299.1 mouse_genomes_project 14 48119276 48126694 - MGP_AJ_P0039465 Ap1g2 protein_coding nonsense_mediated_decay MGP_AJ_T0039466.1 MGP_AJ_G0021299.1 mouse_genomes_project 14 48119276 48126975 - MGP_AJ_P0039466 Ap1g2 protein_coding nonsense_mediated_decay MGP_AJ_T0039467.1 MGP_AJ_G0021299.1 mouse_genomes_project 14 48119276 48127020 - MGP_AJ_P0039467 Ap1g2 protein_coding protein_coding MGP_AJ_T0039468.1 MGP_AJ_G0021299.1 mouse_genomes_project 14 48119281 48126574 - MGP_AJ_P0039468 Ap1g2 protein_coding protein_coding MGP_AJ_T0039469.1 MGP_AJ_G0021299.1 mouse_genomes_project 14 48119480 48126559 - Ap1g2 protein_coding processed_transcript MGP_AJ_T0039470.1 MGP_AJ_G0021299.1 mouse_genomes_project 14 48120861 48121214 - Ap1g2 protein_coding retained_intron MGP_AJ_T0039471.1 MGP_AJ_G0021299.1 mouse_genomes_project 14 48122776 48124937 - Ap1g2 protein_coding retained_intron MGP_AJ_T0039472.1 MGP_AJ_G0021299.1 mouse_genomes_project 14 48123059 48125318 - Ap1g2 protein_coding retained_intron MGP_AJ_T0039473.1 MGP_AJ_G0021299.1 mouse_genomes_project 14 48126132 48126988 - Ap1g2 protein_coding retained_intron MGP_AJ_T0039474.1 MGP_AJ_G0021299.1 mouse_genomes_project 14 48126351 48126935 - Ap1g2 protein_coding processed_transcript MGP_AJ_T0002579.1 MGP_AJ_G0002479.1 mouse_genomes_project 14 47225344 47225378 + TR_J_pseudogene TR_J_pseudogene MGP_AJ_T0039749.1 MGP_AJ_G0021394.1 mouse_genomes_project 14 53940668 54048487 + MGP_AJ_P0039749 Mipep protein_coding protein_coding MGP_AJ_T0099491.1 MGP_AJ_G0037457.1 mouse_genomes_project 14 41229270 41229377 - Gm25380 snRNA snRNA MGP_AJ_T0039973.1 MGP_AJ_G0021485.1 mouse_genomes_project 14 63041068 63062023 - MGP_AJ_P0039973 Rhobtb2 protein_coding protein_coding MGP_AJ_T0039351.1 MGP_AJ_G0021266.1 mouse_genomes_project 14 47378935 47418424 - MGP_AJ_P0039351 Slc7a7 protein_coding protein_coding MGP_AJ_T0039352.1 MGP_AJ_G0021266.1 mouse_genomes_project 14 47378937 47426525 - MGP_AJ_P0039352 Slc7a7 protein_coding protein_coding MGP_AJ_T0039353.1 MGP_AJ_G0021266.1 mouse_genomes_project 14 47378938 47419330 - MGP_AJ_P0039353 Slc7a7 protein_coding protein_coding MGP_AJ_T0039354.1 MGP_AJ_G0021266.1 mouse_genomes_project 14 47382846 47393253 - Slc7a7 protein_coding processed_transcript MGP_AJ_T0039355.1 MGP_AJ_G0021266.1 mouse_genomes_project 14 47383295 47406766 - Slc7a7 protein_coding processed_transcript MGP_AJ_T0039356.1 MGP_AJ_G0021266.1 mouse_genomes_project 14 47388083 47419714 - MGP_AJ_P0039356 Slc7a7 protein_coding protein_coding MGP_AJ_T0039357.1 MGP_AJ_G0021266.1 mouse_genomes_project 14 47417782 47421280 - MGP_AJ_P0039357 Slc7a7 protein_coding protein_coding MGP_AJ_T0039358.1 MGP_AJ_G0021266.1 mouse_genomes_project 14 47417919 47426606 - MGP_AJ_P0039358 Slc7a7 protein_coding protein_coding MGP_AJ_T0039455.1 MGP_AJ_G0021297.1 mouse_genomes_project 14 48074351 48117952 + MGP_AJ_P0039455 Thtpa protein_coding protein_coding MGP_AJ_T0039456.1 MGP_AJ_G0021297.1 mouse_genomes_project 14 48075421 48118339 + Thtpa protein_coding processed_transcript MGP_AJ_T0039457.1 MGP_AJ_G0021297.1 mouse_genomes_project 14 48075957 48119413 + MGP_AJ_P0039457 Thtpa protein_coding protein_coding MGP_AJ_T0039462.1 MGP_AJ_G0021297.1 mouse_genomes_project 14 48115210 48119413 + MGP_AJ_P0039462 Thtpa protein_coding protein_coding MGP_AJ_T0013042.1 MGP_AJ_G0011137.1 mouse_genomes_project 14 92625476 92625817 + processed_pseudogene processed_pseudogene MGP_AJ_T0039144.1 MGP_AJ_G0021206.1 mouse_genomes_project 14 43256578 43257480 + MGP_AJ_P0039144 Olfr746 protein_coding protein_coding MGP_AJ_T0038744.1 MGP_AJ_G0021070.1 mouse_genomes_project 14 23462076 23465415 + MGP_AJ_P0038744 Tnnc1 protein_coding protein_coding MGP_AJ_T0038745.1 MGP_AJ_G0021070.1 mouse_genomes_project 14 23462094 23465322 + MGP_AJ_P0038745 Tnnc1 protein_coding nonsense_mediated_decay MGP_AJ_T0038746.1 MGP_AJ_G0021070.1 mouse_genomes_project 14 23462096 23464684 + Tnnc1 protein_coding retained_intron MGP_AJ_T0039371.1 MGP_AJ_G0021270.1 mouse_genomes_project 14 47488126 47492436 + MGP_AJ_P0039371 Rem2 protein_coding protein_coding MGP_AJ_T0039372.1 MGP_AJ_G0021270.1 mouse_genomes_project 14 47488268 47489923 + Rem2 protein_coding retained_intron MGP_AJ_T0039373.1 MGP_AJ_G0021270.1 mouse_genomes_project 14 47488280 47491682 + MGP_AJ_P0039373 Rem2 protein_coding protein_coding MGP_AJ_T0039374.1 MGP_AJ_G0021270.1 mouse_genomes_project 14 47489499 47491120 + MGP_AJ_P0039374 Rem2 protein_coding protein_coding MGP_AJ_T0039783.1 MGP_AJ_G0021410.1 mouse_genomes_project 14 56162579 56169481 - MGP_AJ_P0039783 Defb48 protein_coding protein_coding MGP_AJ_T0003527.1 MGP_AJ_G0003203.1 mouse_genomes_project 14 16021967 16026180 + Gm29626 antisense antisense MGP_AJ_T0003528.1 MGP_AJ_G0003203.1 mouse_genomes_project 14 16021984 16026178 + Gm29626 antisense antisense MGP_AJ_T0100763.1 MGP_AJ_G0038729.1 mouse_genomes_project 14 23270359 23270435 - Snord19 snoRNA snoRNA MGP_AJ_T0000912.1 MGP_AJ_G0000846.1 mouse_genomes_project 14 48106679 48107718 - TEC TEC MGP_AJ_T0010017.1 MGP_AJ_G0008139.1 mouse_genomes_project 14 108246534 108246618 + Mir17 miRNA miRNA MGP_AJ_T0100794.1 MGP_AJ_G0038760.1 mouse_genomes_project 14 85654641 85654771 - Gm24127 snoRNA snoRNA MGP_AJ_T0011375.1 MGP_AJ_G0009497.1 mouse_genomes_project 14 54812184 54812269 + Gm27747 misc_RNA misc_RNA MGP_AJ_T0006710.1 MGP_AJ_G0005539.1 mouse_genomes_project 14 51175095 51179468 + 3110083C13Rik lincRNA lincRNA MGP_AJ_T0039419.1 MGP_AJ_G0021284.1 mouse_genomes_project 14 47866663 47874449 - MGP_AJ_P0039419 Homez protein_coding protein_coding MGP_AJ_T0039420.1 MGP_AJ_G0021284.1 mouse_genomes_project 14 47867718 47877891 - MGP_AJ_P0039420 Homez protein_coding protein_coding MGP_AJ_T0039421.1 MGP_AJ_G0021284.1 mouse_genomes_project 14 47869504 47871146 - MGP_AJ_P0039421 Homez protein_coding protein_coding MGP_AJ_T0039422.1 MGP_AJ_G0021284.1 mouse_genomes_project 14 47871857 47885558 - MGP_AJ_P0039422 Homez protein_coding protein_coding MGP_AJ_T0099503.1 MGP_AJ_G0037469.1 mouse_genomes_project 14 51001305 51001452 - Gm22738 snRNA snRNA MGP_AJ_T0040241.1 MGP_AJ_G0021582.1 mouse_genomes_project 14 94956094 94956529 - MGP_AJ_P0040241 Gm9922 protein_coding protein_coding MGP_AJ_T0039094.1 MGP_AJ_G0021177.1 mouse_genomes_project 14 41555992 41608456 - MGP_AJ_P0039094 Exoc5 protein_coding protein_coding MGP_AJ_T0039095.1 MGP_AJ_G0021177.1 mouse_genomes_project 14 41557632 41608199 - MGP_AJ_P0039095 Exoc5 protein_coding protein_coding MGP_AJ_T0039096.1 MGP_AJ_G0021177.1 mouse_genomes_project 14 41559350 41563672 - Exoc5 protein_coding retained_intron MGP_AJ_T0039097.1 MGP_AJ_G0021177.1 mouse_genomes_project 14 41560632 41567149 - MGP_AJ_P0039097 Exoc5 protein_coding nonsense_mediated_decay MGP_AJ_T0039098.1 MGP_AJ_G0021177.1 mouse_genomes_project 14 41561338 41567413 - Exoc5 protein_coding retained_intron MGP_AJ_T0039099.1 MGP_AJ_G0021177.1 mouse_genomes_project 14 41573458 41579279 - Exoc5 protein_coding retained_intron MGP_AJ_T0039100.1 MGP_AJ_G0021177.1 mouse_genomes_project 14 41578731 41590716 - MGP_AJ_P0039100 Exoc5 protein_coding protein_coding MGP_AJ_T0039651.1 MGP_AJ_G0021363.1 mouse_genomes_project 14 50253021 50259048 - MGP_AJ_P0039651 Gjb2 protein_coding protein_coding MGP_AJ_T0040206.1 MGP_AJ_G0021568.1 mouse_genomes_project 14 86304494 87162936 - MGP_AJ_P0040206 Pcdh9 protein_coding protein_coding MGP_AJ_T0040207.1 MGP_AJ_G0021568.1 mouse_genomes_project 14 86304786 87162936 - MGP_AJ_P0040207 Pcdh9 protein_coding protein_coding MGP_AJ_T0040208.1 MGP_AJ_G0021568.1 mouse_genomes_project 14 86305060 87162896 - MGP_AJ_P0040208 Pcdh9 protein_coding protein_coding MGP_AJ_T0040209.1 MGP_AJ_G0021568.1 mouse_genomes_project 14 86305287 87162425 - MGP_AJ_P0040209 Pcdh9 protein_coding protein_coding MGP_AJ_T0040210.1 MGP_AJ_G0021568.1 mouse_genomes_project 14 86306601 87161006 - MGP_AJ_P0040210 Pcdh9 protein_coding protein_coding MGP_AJ_T0040211.1 MGP_AJ_G0021568.1 mouse_genomes_project 14 86459774 87158022 - MGP_AJ_P0040211 Pcdh9 protein_coding protein_coding MGP_AJ_T0040212.1 MGP_AJ_G0021568.1 mouse_genomes_project 14 87157833 87158498 - Pcdh9 protein_coding retained_intron MGP_AJ_T0040213.1 MGP_AJ_G0021568.1 mouse_genomes_project 14 87158386 87162946 - MGP_AJ_P0040213 Pcdh9 protein_coding protein_coding MGP_AJ_T0100779.1 MGP_AJ_G0038745.1 mouse_genomes_project 14 55811430 55811562 - Gm23816 snoRNA snoRNA MGP_AJ_T0039947.1 MGP_AJ_G0021475.1 mouse_genomes_project 14 62496798 62542093 - MGP_AJ_P0039947 Slc25a37 protein_coding protein_coding MGP_AJ_T0039948.1 MGP_AJ_G0021475.1 mouse_genomes_project 14 62496801 62542093 - Slc25a37 protein_coding retained_intron MGP_AJ_T0039949.1 MGP_AJ_G0021475.1 mouse_genomes_project 14 62499124 62541948 - MGP_AJ_P0039949 Slc25a37 protein_coding nonsense_mediated_decay MGP_AJ_T0010000.1 MGP_AJ_G0008122.1 mouse_genomes_project 14 60506404 60506499 - Gm23178 miRNA miRNA MGP_AJ_T0000910.1 MGP_AJ_G0000844.1 mouse_genomes_project 14 47893991 47896623 + TEC TEC MGP_AJ_T0098581.1 MGP_AJ_G0036565.1 mouse_genomes_project 14 4750002 4750112 - n-R5s45 rRNA rRNA MGP_AJ_T0039124.1 MGP_AJ_G0021189.1 mouse_genomes_project 14 42737795 42738767 - MGP_AJ_P0039124 Olfr729 protein_coding protein_coding MGP_AJ_T0040178.1 MGP_AJ_G0021555.1 mouse_genomes_project 14 72696469 72700998 + MGP_AJ_P0040178 Kbtbd7 protein_coding protein_coding MGP_AJ_T0002574.1 MGP_AJ_G0002474.1 mouse_genomes_project 14 47176153 47176207 + TR_J_pseudogene TR_J_pseudogene MGP_AJ_T0099498.1 MGP_AJ_G0037464.1 mouse_genomes_project 14 45159501 45159605 + Gm26328 snRNA snRNA MGP_AJ_T0100756.1 MGP_AJ_G0038722.1 mouse_genomes_project 14 4655629 4655758 - Gm24578 snoRNA snoRNA MGP_AJ_T0010013.1 MGP_AJ_G0008135.1 mouse_genomes_project 14 96846412 96846517 - Gm22877 miRNA miRNA MGP_AJ_T0099516.1 MGP_AJ_G0037482.1 mouse_genomes_project 14 92589877 92589999 - Gm22984 snRNA snRNA MGP_AJ_T0013029.1 MGP_AJ_G0011124.1 mouse_genomes_project 14 65091634 65092619 - processed_pseudogene processed_pseudogene MGP_AJ_T0039929.1 MGP_AJ_G0021464.1 mouse_genomes_project 14 60959162 60982883 + MGP_AJ_P0039929 Kctd9 protein_coding protein_coding MGP_AJ_T0039930.1 MGP_AJ_G0021464.1 mouse_genomes_project 14 60959323 60985537 + MGP_AJ_P0039930 Kctd9 protein_coding protein_coding MGP_AJ_T0039931.1 MGP_AJ_G0021464.1 mouse_genomes_project 14 60959365 60972921 + MGP_AJ_P0039931 Kctd9 protein_coding protein_coding MGP_AJ_T0039932.1 MGP_AJ_G0021464.1 mouse_genomes_project 14 60959510 60985388 + MGP_AJ_P0039932 Kctd9 protein_coding nonsense_mediated_decay MGP_AJ_T0039933.1 MGP_AJ_G0021464.1 mouse_genomes_project 14 60959562 60983638 + MGP_AJ_P0039933 Kctd9 protein_coding protein_coding MGP_AJ_T0040148.1 MGP_AJ_G0021540.1 mouse_genomes_project 14 70313397 70327472 - MGP_AJ_P0040148 Lacc1 protein_coding protein_coding MGP_AJ_T0040149.1 MGP_AJ_G0021540.1 mouse_genomes_project 14 70323163 70327735 - Lacc1 protein_coding retained_intron MGP_AJ_T0040150.1 MGP_AJ_G0021540.1 mouse_genomes_project 14 70325769 70326911 - MGP_AJ_P0040150 Lacc1 protein_coding protein_coding MGP_AJ_T0006713.1 MGP_AJ_G0005542.1 mouse_genomes_project 14 54817763 54836117 + Gm27017 lincRNA lincRNA MGP_AJ_T0009989.1 MGP_AJ_G0008111.1 mouse_genomes_project 14 49161286 49161354 - Mir6949 miRNA miRNA MGP_AJ_T0039994.1 MGP_AJ_G0021494.1 mouse_genomes_project 14 63569552 63618039 - MGP_AJ_P0039994 Slc39a14 protein_coding protein_coding MGP_AJ_T0039995.1 MGP_AJ_G0021494.1 mouse_genomes_project 14 63572864 63615045 - MGP_AJ_P0039995 Slc39a14 protein_coding protein_coding MGP_AJ_T0039996.1 MGP_AJ_G0021494.1 mouse_genomes_project 14 63572878 63618039 - MGP_AJ_P0039996 Slc39a14 protein_coding protein_coding MGP_AJ_T0039997.1 MGP_AJ_G0021494.1 mouse_genomes_project 14 63575353 63577822 - Slc39a14 protein_coding retained_intron MGP_AJ_T0039998.1 MGP_AJ_G0021494.1 mouse_genomes_project 14 63577518 63580505 - Slc39a14 protein_coding retained_intron MGP_AJ_T0039999.1 MGP_AJ_G0021494.1 mouse_genomes_project 14 63580538 63618028 - Slc39a14 protein_coding retained_intron MGP_AJ_T0040000.1 MGP_AJ_G0021494.1 mouse_genomes_project 14 63581690 63615047 - Slc39a14 protein_coding retained_intron MGP_AJ_T0040001.1 MGP_AJ_G0021494.1 mouse_genomes_project 14 63582372 63600790 - MGP_AJ_P0040001 Slc39a14 protein_coding protein_coding MGP_AJ_T0040002.1 MGP_AJ_G0021494.1 mouse_genomes_project 14 63583045 63618008 - MGP_AJ_P0040002 Slc39a14 protein_coding protein_coding MGP_AJ_T0040003.1 MGP_AJ_G0021494.1 mouse_genomes_project 14 63583079 63590409 - MGP_AJ_P0040003 Slc39a14 protein_coding protein_coding MGP_AJ_T0040004.1 MGP_AJ_G0021494.1 mouse_genomes_project 14 63583140 63618029 - MGP_AJ_P0040004 Slc39a14 protein_coding protein_coding MGP_AJ_T0040005.1 MGP_AJ_G0021494.1 mouse_genomes_project 14 63585312 63598110 - MGP_AJ_P0040005 Slc39a14 protein_coding protein_coding MGP_AJ_T0040006.1 MGP_AJ_G0021494.1 mouse_genomes_project 14 63597668 63618039 - Slc39a14 protein_coding retained_intron MGP_AJ_T0006730.1 MGP_AJ_G0005554.1 mouse_genomes_project 14 70761238 70788602 - Gm6994 lincRNA lincRNA MGP_AJ_T0006731.1 MGP_AJ_G0005554.1 mouse_genomes_project 14 70761851 70782908 - Gm6994 lincRNA lincRNA MGP_AJ_T0003567.1 MGP_AJ_G0003236.1 mouse_genomes_project 14 57326475 57329933 - Gm17116 antisense antisense MGP_AJ_T0038288.1 MGP_AJ_G0020957.1 mouse_genomes_project 14 6713140 6722133 + MGP_AJ_P0038288 Il3ra protein_coding protein_coding MGP_AJ_T0038289.1 MGP_AJ_G0020957.1 mouse_genomes_project 14 6713776 6722069 + MGP_AJ_P0038289 Il3ra protein_coding unknown_likely_coding MGP_AJ_T0003526.1 MGP_AJ_G0003202.1 mouse_genomes_project 14 15499861 15556001 - Gm10248 antisense antisense MGP_AJ_T0000929.1 MGP_AJ_G0000863.1 mouse_genomes_project 14 109939174 109940089 + TEC TEC MGP_AJ_T0039129.1 MGP_AJ_G0021194.1 mouse_genomes_project 14 42895370 42896403 - MGP_AJ_P0039129 Olfr734 protein_coding protein_coding MGP_AJ_T0011371.1 MGP_AJ_G0009493.1 mouse_genomes_project 14 37945232 37945515 - Gm22637 misc_RNA misc_RNA MGP_AJ_T0000921.1 MGP_AJ_G0000855.1 mouse_genomes_project 14 62654239 62656507 - TEC TEC MGP_AJ_T0038258.1 MGP_AJ_G0020945.1 mouse_genomes_project 14 3867068 4564250 + MGP_AJ_P0038258 Ptprg protein_coding protein_coding MGP_AJ_T0038259.1 MGP_AJ_G0020945.1 mouse_genomes_project 14 3867089 4560773 + MGP_AJ_P0038259 Ptprg protein_coding nonsense_mediated_decay MGP_AJ_T0038260.1 MGP_AJ_G0020945.1 mouse_genomes_project 14 3867117 4282358 + Ptprg protein_coding retained_intron MGP_AJ_T0038261.1 MGP_AJ_G0020945.1 mouse_genomes_project 14 4412856 4444204 + MGP_AJ_P0038261 Ptprg protein_coding protein_coding MGP_AJ_T0038262.1 MGP_AJ_G0020945.1 mouse_genomes_project 14 4511709 4560772 + MGP_AJ_P0038262 Ptprg protein_coding protein_coding MGP_AJ_T0038263.1 MGP_AJ_G0020945.1 mouse_genomes_project 14 4541144 4545760 + Ptprg protein_coding processed_transcript MGP_AJ_T0009987.1 MGP_AJ_G0008109.1 mouse_genomes_project 14 47967263 47967346 - Mir208a miRNA miRNA MGP_AJ_T0099479.1 MGP_AJ_G0037445.1 mouse_genomes_project 14 6237359 6237456 + Gm25964 snRNA snRNA MGP_AJ_T0003578.1 MGP_AJ_G0003243.1 mouse_genomes_project 14 65872493 65887184 + Gm16549 antisense antisense MGP_AJ_T0038363.1 MGP_AJ_G0020979.1 mouse_genomes_project 14 12747059 12767677 + MGP_AJ_P0038363 Nudt13 protein_coding unknown_likely_coding MGP_AJ_T0039604.1 MGP_AJ_G0021329.1 mouse_genomes_project 14 48819439 48826544 + MGP_AJ_P0039604 Ltb4r1 protein_coding protein_coding MGP_AJ_T0040029.1 MGP_AJ_G0021508.1 mouse_genomes_project 14 63923158 64027773 - MGP_AJ_P0040029 Xpo7 protein_coding protein_coding MGP_AJ_T0040030.1 MGP_AJ_G0021508.1 mouse_genomes_project 14 63923158 64027773 - MGP_AJ_P0040030 Xpo7 protein_coding protein_coding MGP_AJ_T0038800.1 MGP_AJ_G0021085.1 mouse_genomes_project 14 24348179 24354474 + MGP_AJ_P0038800 Oxnad1 protein_coding protein_coding MGP_AJ_T0038801.1 MGP_AJ_G0021085.1 mouse_genomes_project 14 24348181 24359342 + MGP_AJ_P0038801 Oxnad1 protein_coding protein_coding MGP_AJ_T0038802.1 MGP_AJ_G0021085.1 mouse_genomes_project 14 24348218 24366000 + MGP_AJ_P0038802 Oxnad1 protein_coding protein_coding MGP_AJ_T0038803.1 MGP_AJ_G0021085.1 mouse_genomes_project 14 24348592 24362429 + MGP_AJ_P0038803 Oxnad1 protein_coding nonsense_mediated_decay MGP_AJ_T0038804.1 MGP_AJ_G0021085.1 mouse_genomes_project 14 24348616 24366000 + MGP_AJ_P0038804 Oxnad1 protein_coding nonsense_mediated_decay MGP_AJ_T0038805.1 MGP_AJ_G0021085.1 mouse_genomes_project 14 24348631 24362298 + MGP_AJ_P0038805 Oxnad1 protein_coding protein_coding MGP_AJ_T0038806.1 MGP_AJ_G0021085.1 mouse_genomes_project 14 24348639 24362840 + Oxnad1 protein_coding retained_intron MGP_AJ_T0038807.1 MGP_AJ_G0021085.1 mouse_genomes_project 14 24348639 24359422 + MGP_AJ_P0038807 Oxnad1 protein_coding protein_coding MGP_AJ_T0038808.1 MGP_AJ_G0021085.1 mouse_genomes_project 14 24348682 24359382 + MGP_AJ_P0038808 Oxnad1 protein_coding protein_coding MGP_AJ_T0038809.1 MGP_AJ_G0021085.1 mouse_genomes_project 14 24358196 24365453 + MGP_AJ_P0038809 Oxnad1 protein_coding nonsense_mediated_decay MGP_AJ_T0038810.1 MGP_AJ_G0021085.1 mouse_genomes_project 14 24358259 24365650 + MGP_AJ_P0038810 Oxnad1 protein_coding protein_coding MGP_AJ_T0038811.1 MGP_AJ_G0021085.1 mouse_genomes_project 14 24363615 24365080 + Oxnad1 protein_coding retained_intron MGP_AJ_T0000923.1 MGP_AJ_G0000857.1 mouse_genomes_project 14 80509666 80510043 - TEC TEC MGP_AJ_T0006690.1 MGP_AJ_G0005525.1 mouse_genomes_project 14 39033958 39046014 + E130120K24Rik lincRNA lincRNA MGP_AJ_T0038955.1 MGP_AJ_G0021140.1 mouse_genomes_project 14 33190757 33251689 - MGP_AJ_P0038955 Tspan14 protein_coding protein_coding MGP_AJ_T0000913.1 MGP_AJ_G0000847.1 mouse_genomes_project 14 54836024 54838936 - TEC TEC MGP_AJ_T0006737.1 MGP_AJ_G0005559.1 mouse_genomes_project 14 111266451 111275717 + Gm26773 lincRNA lincRNA MGP_AJ_T0013031.1 MGP_AJ_G0011126.1 mouse_genomes_project 14 67981798 67995533 + processed_pseudogene processed_pseudogene MGP_AJ_T0038676.1 MGP_AJ_G0021062.1 mouse_genomes_project 14 23253609 23255735 - MGP_AJ_P0038676 Spcs1 protein_coding protein_coding MGP_AJ_T0038677.1 MGP_AJ_G0021062.1 mouse_genomes_project 14 23253609 23255798 - MGP_AJ_P0038677 Spcs1 protein_coding protein_coding MGP_AJ_T0038678.1 MGP_AJ_G0021062.1 mouse_genomes_project 14 23253610 23255489 - MGP_AJ_P0038678 Spcs1 protein_coding protein_coding MGP_AJ_T0038679.1 MGP_AJ_G0021062.1 mouse_genomes_project 14 23253610 23255792 - MGP_AJ_P0038679 Spcs1 protein_coding protein_coding MGP_AJ_T0038680.1 MGP_AJ_G0021062.1 mouse_genomes_project 14 23253611 23255495 - Spcs1 protein_coding retained_intron MGP_AJ_T0038681.1 MGP_AJ_G0021062.1 mouse_genomes_project 14 23254342 23255476 - Spcs1 protein_coding retained_intron MGP_AJ_T0038682.1 MGP_AJ_G0021062.1 mouse_genomes_project 14 23254521 23255493 - MGP_AJ_P0038682 Spcs1 protein_coding protein_coding MGP_AJ_T0003522.1 MGP_AJ_G0003200.1 mouse_genomes_project 14 13096869 13099909 + 2810402E24Rik antisense antisense MGP_AJ_T0039054.1 MGP_AJ_G0021173.1 mouse_genomes_project 14 40163201 40257205 + MGP_AJ_P0039054 Ktn1 protein_coding protein_coding MGP_AJ_T0039055.1 MGP_AJ_G0021173.1 mouse_genomes_project 14 40164073 40257205 + MGP_AJ_P0039055 Ktn1 protein_coding protein_coding MGP_AJ_T0039056.1 MGP_AJ_G0021173.1 mouse_genomes_project 14 40164078 40179117 + MGP_AJ_P0039056 Ktn1 protein_coding protein_coding MGP_AJ_T0039057.1 MGP_AJ_G0021173.1 mouse_genomes_project 14 40164156 40257212 + MGP_AJ_P0039057 Ktn1 protein_coding nonsense_mediated_decay MGP_AJ_T0039058.1 MGP_AJ_G0021173.1 mouse_genomes_project 14 40178557 40257211 + MGP_AJ_P0039058 Ktn1 protein_coding protein_coding MGP_AJ_T0039059.1 MGP_AJ_G0021173.1 mouse_genomes_project 14 40178588 40256939 + MGP_AJ_P0039059 Ktn1 protein_coding protein_coding MGP_AJ_T0039060.1 MGP_AJ_G0021173.1 mouse_genomes_project 14 40178588 40256937 + MGP_AJ_P0039060 Ktn1 protein_coding protein_coding MGP_AJ_T0039061.1 MGP_AJ_G0021173.1 mouse_genomes_project 14 40178588 40256941 + MGP_AJ_P0039061 Ktn1 protein_coding protein_coding MGP_AJ_T0039062.1 MGP_AJ_G0021173.1 mouse_genomes_project 14 40178588 40256936 + MGP_AJ_P0039062 Ktn1 protein_coding protein_coding MGP_AJ_T0039063.1 MGP_AJ_G0021173.1 mouse_genomes_project 14 40178588 40256932 + MGP_AJ_P0039063 Ktn1 protein_coding protein_coding MGP_AJ_T0039064.1 MGP_AJ_G0021173.1 mouse_genomes_project 14 40178588 40256939 + MGP_AJ_P0039064 Ktn1 protein_coding protein_coding MGP_AJ_T0039065.1 MGP_AJ_G0021173.1 mouse_genomes_project 14 40178588 40256939 + MGP_AJ_P0039065 Ktn1 protein_coding protein_coding MGP_AJ_T0039066.1 MGP_AJ_G0021173.1 mouse_genomes_project 14 40178588 40256939 + MGP_AJ_P0039066 Ktn1 protein_coding protein_coding MGP_AJ_T0039067.1 MGP_AJ_G0021173.1 mouse_genomes_project 14 40178588 40256941 + MGP_AJ_P0039067 Ktn1 protein_coding protein_coding MGP_AJ_T0039068.1 MGP_AJ_G0021173.1 mouse_genomes_project 14 40178588 40256935 + MGP_AJ_P0039068 Ktn1 protein_coding protein_coding MGP_AJ_T0039069.1 MGP_AJ_G0021173.1 mouse_genomes_project 14 40178588 40256927 + MGP_AJ_P0039069 Ktn1 protein_coding protein_coding MGP_AJ_T0039070.1 MGP_AJ_G0021173.1 mouse_genomes_project 14 40178588 40256939 + MGP_AJ_P0039070 Ktn1 protein_coding protein_coding MGP_AJ_T0039071.1 MGP_AJ_G0021173.1 mouse_genomes_project 14 40178588 40256939 + MGP_AJ_P0039071 Ktn1 protein_coding protein_coding MGP_AJ_T0039072.1 MGP_AJ_G0021173.1 mouse_genomes_project 14 40178588 40256939 + MGP_AJ_P0039072 Ktn1 protein_coding protein_coding MGP_AJ_T0039073.1 MGP_AJ_G0021173.1 mouse_genomes_project 14 40178588 40256939 + MGP_AJ_P0039073 Ktn1 protein_coding protein_coding MGP_AJ_T0039074.1 MGP_AJ_G0021173.1 mouse_genomes_project 14 40178588 40256939 + MGP_AJ_P0039074 Ktn1 protein_coding protein_coding MGP_AJ_T0039075.1 MGP_AJ_G0021173.1 mouse_genomes_project 14 40219034 40222780 + Ktn1 protein_coding retained_intron MGP_AJ_T0039076.1 MGP_AJ_G0021173.1 mouse_genomes_project 14 40223996 40235108 + Ktn1 protein_coding retained_intron MGP_AJ_T0039077.1 MGP_AJ_G0021173.1 mouse_genomes_project 14 40234308 40245554 + Ktn1 protein_coding retained_intron MGP_AJ_T0039078.1 MGP_AJ_G0021173.1 mouse_genomes_project 14 40245437 40246913 + Ktn1 protein_coding retained_intron MGP_AJ_T0039079.1 MGP_AJ_G0021173.1 mouse_genomes_project 14 40250328 40257209 + Ktn1 protein_coding retained_intron MGP_AJ_T0006672.1 MGP_AJ_G0005513.1 mouse_genomes_project 14 18020589 18026527 - Gm26772 lincRNA lincRNA MGP_AJ_T0002580.1 MGP_AJ_G0002480.1 mouse_genomes_project 14 47230163 47230200 + TR_J_pseudogene TR_J_pseudogene MGP_AJ_T0006686.1 MGP_AJ_G0005521.1 mouse_genomes_project 14 31896848 31925719 + 1700109I08Rik lincRNA lincRNA MGP_AJ_T0002540.1 MGP_AJ_G0002442.1 mouse_genomes_project 14 47217470 47217530 + MGP_AJ_P0002540 Traj22 TR_J_gene TR_J_gene MGP_AJ_T0039648.1 MGP_AJ_G0021360.1 mouse_genomes_project 14 50121339 50121756 + MGP_AJ_P0039648 protein_coding protein_coding MGP_AJ_T0040242.1 MGP_AJ_G0021583.1 mouse_genomes_project 14 94956871 95157342 + MGP_AJ_P0040242 Lmo7 protein_coding protein_coding MGP_AJ_T0040243.1 MGP_AJ_G0021583.1 mouse_genomes_project 14 95051739 95103490 + Lmo7 protein_coding processed_transcript MGP_AJ_T0040244.1 MGP_AJ_G0021583.1 mouse_genomes_project 14 95061276 95157337 + MGP_AJ_P0040244 Lmo7 protein_coding nonsense_mediated_decay MGP_AJ_T0040245.1 MGP_AJ_G0021583.1 mouse_genomes_project 14 95063061 95107073 + Lmo7 protein_coding processed_transcript MGP_AJ_T0040246.1 MGP_AJ_G0021583.1 mouse_genomes_project 14 95063271 95108492 + Lmo7 protein_coding retained_intron MGP_AJ_T0040247.1 MGP_AJ_G0021583.1 mouse_genomes_project 14 95063271 95121245 + MGP_AJ_P0040247 Lmo7 protein_coding protein_coding MGP_AJ_T0040248.1 MGP_AJ_G0021583.1 mouse_genomes_project 14 95063583 95135341 + Lmo7 protein_coding retained_intron MGP_AJ_T0040249.1 MGP_AJ_G0021583.1 mouse_genomes_project 14 95092144 95106876 + Lmo7 protein_coding processed_transcript MGP_AJ_T0040250.1 MGP_AJ_G0021583.1 mouse_genomes_project 14 95099482 95157174 + MGP_AJ_P0040250 Lmo7 protein_coding protein_coding MGP_AJ_T0040251.1 MGP_AJ_G0021583.1 mouse_genomes_project 14 95103499 95156843 + MGP_AJ_P0040251 Lmo7 protein_coding protein_coding MGP_AJ_T0040252.1 MGP_AJ_G0021583.1 mouse_genomes_project 14 95106745 95122768 + Lmo7 protein_coding retained_intron MGP_AJ_T0040253.1 MGP_AJ_G0021583.1 mouse_genomes_project 14 95106777 95110859 + Lmo7 protein_coding retained_intron MGP_AJ_T0040254.1 MGP_AJ_G0021583.1 mouse_genomes_project 14 95141740 95153408 + Lmo7 protein_coding retained_intron MGP_AJ_T0040255.1 MGP_AJ_G0021583.1 mouse_genomes_project 14 95148950 95155785 + Lmo7 protein_coding processed_transcript MGP_AJ_T0040256.1 MGP_AJ_G0021583.1 mouse_genomes_project 14 95151908 95155514 + Lmo7 protein_coding processed_transcript MGP_AJ_T0039690.1 MGP_AJ_G0021375.1 mouse_genomes_project 14 51002944 51060755 - MGP_AJ_P0039690 Zdhhc20 protein_coding protein_coding MGP_AJ_T0039691.1 MGP_AJ_G0021375.1 mouse_genomes_project 14 51006351 51060673 - MGP_AJ_P0039691 Zdhhc20 protein_coding unknown_likely_coding MGP_AJ_T0040164.1 MGP_AJ_G0021548.1 mouse_genomes_project 14 71766353 71811632 - MGP_AJ_P0040164 Akap11 protein_coding protein_coding MGP_AJ_T0040165.1 MGP_AJ_G0021548.1 mouse_genomes_project 14 71766353 71811684 - MGP_AJ_P0040165 Akap11 protein_coding protein_coding MGP_AJ_T0002542.1 MGP_AJ_G0002444.1 mouse_genomes_project 14 47219664 47219722 + MGP_AJ_P0002542 Traj20 TR_J_gene TR_J_gene MGP_AJ_T0002625.1 MGP_AJ_G0002518.1 mouse_genomes_project 14 45994910 45995463 + MGP_AJ_P0002625 TR_V_gene TR_V_gene MGP_AJ_T0039782.1 MGP_AJ_G0021409.1 mouse_genomes_project 14 56014014 56140362 + MGP_AJ_P0039782 Wdfy2 protein_coding protein_coding MGP_AJ_T0006683.1 MGP_AJ_G0005519.1 mouse_genomes_project 14 24955761 24957630 + Gm28651 lincRNA lincRNA MGP_AJ_T0002718.1 MGP_AJ_G0002590.1 mouse_genomes_project 14 46141662 46141942 + TR_V_pseudogene TR_V_pseudogene MGP_AJ_T0002553.1 MGP_AJ_G0002455.1 mouse_genomes_project 14 47232937 47232999 + MGP_AJ_P0002553 Traj6 TR_J_gene TR_J_gene MGP_AJ_T0039917.1 MGP_AJ_G0021461.1 mouse_genomes_project 14 60230799 60290422 - MGP_AJ_P0039917 Ppp2r2a protein_coding protein_coding MGP_AJ_T0098791.1 MGP_AJ_G0036775.1 mouse_genomes_project 14 43421790 43422088 - Rpph1 ribozyme ribozyme MGP_AJ_T0002653.1 MGP_AJ_G0002538.1 mouse_genomes_project 14 46855891 46856617 + MGP_AJ_P0002653 Trav18 TR_V_gene TR_V_gene MGP_AJ_T0002654.1 MGP_AJ_G0002538.1 mouse_genomes_project 14 46855891 46856617 + MGP_AJ_P0002654 Trav18 TR_V_gene TR_V_gene MGP_AJ_T0011377.1 MGP_AJ_G0009499.1 mouse_genomes_project 14 54835191 54835447 + Gm27928 misc_RNA misc_RNA MGP_AJ_T0039151.1 MGP_AJ_G0021211.1 mouse_genomes_project 14 43401066 43407484 - MGP_AJ_P0039151 Ccnb1ip1 protein_coding protein_coding MGP_AJ_T0040352.1 MGP_AJ_G0021622.1 mouse_genomes_project 14 114667072 114714239 - MGP_AJ_P0040352 Slc15a1 protein_coding protein_coding MGP_AJ_T0039606.1 MGP_AJ_G0021331.1 mouse_genomes_project 14 48843044 48846906 - MGP_AJ_P0039606 Ripk3 protein_coding protein_coding MGP_AJ_T0039607.1 MGP_AJ_G0021331.1 mouse_genomes_project 14 48843169 48846685 - MGP_AJ_P0039607 Ripk3 protein_coding protein_coding MGP_AJ_T0038944.1 MGP_AJ_G0021134.1 mouse_genomes_project 14 29303732 29309888 + MGP_AJ_P0038944 Lrit2 protein_coding protein_coding MGP_AJ_T0039475.1 MGP_AJ_G0021300.1 mouse_genomes_project 14 48127256 48137362 - MGP_AJ_P0039475 Jph4 protein_coding protein_coding MGP_AJ_T0039476.1 MGP_AJ_G0021300.1 mouse_genomes_project 14 48127703 48135979 - MGP_AJ_P0039476 Jph4 protein_coding protein_coding MGP_AJ_T0039477.1 MGP_AJ_G0021300.1 mouse_genomes_project 14 48130068 48130985 - Jph4 protein_coding retained_intron MGP_AJ_T0039478.1 MGP_AJ_G0021300.1 mouse_genomes_project 14 48131916 48137007 - Jph4 protein_coding retained_intron MGP_AJ_T0038684.1 MGP_AJ_G0021064.1 mouse_genomes_project 14 23266587 23273243 - MGP_AJ_P0038684 Gnl3 protein_coding protein_coding MGP_AJ_T0039909.1 MGP_AJ_G0021460.1 mouse_genomes_project 14 60198637 60225618 - MGP_AJ_P0039909 Bnip3l protein_coding protein_coding MGP_AJ_T0039910.1 MGP_AJ_G0021460.1 mouse_genomes_project 14 60198637 60225597 - MGP_AJ_P0039910 Bnip3l protein_coding protein_coding MGP_AJ_T0039911.1 MGP_AJ_G0021460.1 mouse_genomes_project 14 60200671 60206590 - Bnip3l protein_coding processed_transcript MGP_AJ_T0039912.1 MGP_AJ_G0021460.1 mouse_genomes_project 14 60204293 60217236 - MGP_AJ_P0039912 Bnip3l protein_coding unknown_likely_coding MGP_AJ_T0039913.1 MGP_AJ_G0021460.1 mouse_genomes_project 14 60205796 60216651 - Bnip3l protein_coding processed_transcript MGP_AJ_T0039914.1 MGP_AJ_G0021460.1 mouse_genomes_project 14 60206178 60217254 - Bnip3l protein_coding processed_transcript MGP_AJ_T0039915.1 MGP_AJ_G0021460.1 mouse_genomes_project 14 60206182 60216474 - Bnip3l protein_coding processed_transcript MGP_AJ_T0039916.1 MGP_AJ_G0021460.1 mouse_genomes_project 14 60210296 60216406 - Bnip3l protein_coding retained_intron MGP_AJ_T0100771.1 MGP_AJ_G0038737.1 mouse_genomes_project 14 45028547 45028657 - Snord8 snoRNA snoRNA MGP_AJ_T0038405.1 MGP_AJ_G0020996.1 mouse_genomes_project 14 13191069 13250266 - MGP_AJ_P0038405 Camk2g protein_coding unknown_likely_coding MGP_AJ_T0038406.1 MGP_AJ_G0020996.1 mouse_genomes_project 14 13191074 13250389 - MGP_AJ_P0038406 Camk2g protein_coding protein_coding MGP_AJ_T0038407.1 MGP_AJ_G0020996.1 mouse_genomes_project 14 13191074 13250389 - MGP_AJ_P0038407 Camk2g protein_coding protein_coding MGP_AJ_T0038408.1 MGP_AJ_G0020996.1 mouse_genomes_project 14 13191074 13250389 - MGP_AJ_P0038408 Camk2g protein_coding protein_coding MGP_AJ_T0040298.1 MGP_AJ_G0021597.1 mouse_genomes_project 14 99296745 99297150 - MGP_AJ_P0040298 Gm4775 protein_coding protein_coding MGP_AJ_T0039052.1 MGP_AJ_G0021171.1 mouse_genomes_project 14 40036192 40038672 + MGP_AJ_P0039052 protein_coding protein_coding MGP_AJ_T0098920.1 MGP_AJ_G0036900.1 mouse_genomes_project 14 114451516 114456794 + B930095G15Rik sense_intronic sense_intronic MGP_AJ_T0038232.1 MGP_AJ_G0020938.1 mouse_genomes_project 14 528743 538158 + MGP_AJ_P0038232 Kctd6 protein_coding protein_coding MGP_AJ_T0038233.1 MGP_AJ_G0020938.1 mouse_genomes_project 14 529097 538152 + MGP_AJ_P0038233 Kctd6 protein_coding protein_coding MGP_AJ_T0039805.1 MGP_AJ_G0021420.1 mouse_genomes_project 14 56646257 56676635 + MGP_AJ_P0039805 Fam167a protein_coding protein_coding MGP_AJ_T0039806.1 MGP_AJ_G0021420.1 mouse_genomes_project 14 56646272 56653157 + Fam167a protein_coding retained_intron MGP_AJ_T0011372.1 MGP_AJ_G0009494.1 mouse_genomes_project 14 47143455 47143795 + Gm23704 misc_RNA misc_RNA MGP_AJ_T0100792.1 MGP_AJ_G0038758.1 mouse_genomes_project 14 83708305 83708436 + Gm25495 snoRNA snoRNA MGP_AJ_T0039617.1 MGP_AJ_G0021338.1 mouse_genomes_project 14 49085678 49088106 + MGP_AJ_P0039617 Mcpt1 protein_coding protein_coding MGP_AJ_T0039514.1 MGP_AJ_G0021309.1 mouse_genomes_project 14 48622036 48623372 + MGP_AJ_P0039514 Fitm1 protein_coding protein_coding MGP_AJ_T0099507.1 MGP_AJ_G0037473.1 mouse_genomes_project 14 68910658 68910765 - Gm23622 snRNA snRNA MGP_AJ_T0038521.1 MGP_AJ_G0021018.1 mouse_genomes_project 14 18364452 18379847 - MGP_AJ_P0038521 protein_coding protein_coding MGP_AJ_T0038528.1 MGP_AJ_G0021018.1 mouse_genomes_project 14 18365828 18379810 - MGP_AJ_P0038528 protein_coding protein_coding MGP_AJ_T0010014.1 MGP_AJ_G0008136.1 mouse_genomes_project 14 98839118 98839247 - Mir6390 miRNA miRNA MGP_AJ_T0009980.1 MGP_AJ_G0008102.1 mouse_genomes_project 14 37388491 37388560 - Mir327 miRNA miRNA MGP_AJ_T0012980.1 MGP_AJ_G0011075.1 mouse_genomes_project 14 11139096 11140266 + processed_pseudogene processed_pseudogene MGP_AJ_T0013019.1 MGP_AJ_G0011114.1 mouse_genomes_project 14 49330198 49331207 + processed_pseudogene processed_pseudogene MGP_AJ_T0039451.1 MGP_AJ_G0021295.1 mouse_genomes_project 14 47996032 47996123 + MGP_AJ_P0039451 Gm17428 protein_coding protein_coding MGP_AJ_T0039388.1 MGP_AJ_G0021278.1 mouse_genomes_project 14 47644935 47645386 + MGP_AJ_P0039388 Gm20726 protein_coding protein_coding MGP_AJ_T0040366.1 MGP_AJ_G0021631.1 mouse_genomes_project 14 115694527 115704767 - MGP_AJ_P0040366 Zic5 protein_coding protein_coding MGP_AJ_T0040010.1 MGP_AJ_G0021497.1 mouse_genomes_project 14 63726019 63737319 + MGP_AJ_P0040010 Phyhip protein_coding protein_coding MGP_AJ_T0040011.1 MGP_AJ_G0021497.1 mouse_genomes_project 14 63727066 63731836 + MGP_AJ_P0040011 Phyhip protein_coding protein_coding MGP_AJ_T0003581.1 MGP_AJ_G0003246.1 mouse_genomes_project 14 73053591 73056427 + Gm9748 antisense antisense MGP_AJ_T0003582.1 MGP_AJ_G0003246.1 mouse_genomes_project 14 73053665 73056375 + Gm9748 antisense antisense MGP_AJ_T0099492.1 MGP_AJ_G0037458.1 mouse_genomes_project 14 41303759 41303864 - Gm22699 snRNA snRNA MGP_AJ_T0009976.1 MGP_AJ_G0008098.1 mouse_genomes_project 14 19597231 19597354 - Gm23633 miRNA miRNA MGP_AJ_T0038227.1 MGP_AJ_G0020935.1 mouse_genomes_project 14 391627 402938 + MGP_AJ_P0038227 protein_coding protein_coding MGP_AJ_T0038228.1 MGP_AJ_G0020935.1 mouse_genomes_project 14 401181 401658 + MGP_AJ_P0038228 protein_coding protein_coding MGP_AJ_T0039603.1 MGP_AJ_G0021328.1 mouse_genomes_project 14 48814917 48816719 + MGP_AJ_P0039603 Ltb4r2 protein_coding protein_coding MGP_AJ_T0012975.1 MGP_AJ_G0011070.1 mouse_genomes_project 14 5199960 5200293 + processed_pseudogene processed_pseudogene MGP_AJ_T0038906.1 MGP_AJ_G0021122.1 mouse_genomes_project 14 26661109 26685274 + MGP_AJ_P0038906 Mmrn2 protein_coding protein_coding MGP_AJ_T0038841.1 MGP_AJ_G0021092.1 mouse_genomes_project 14 24644874 24656985 - MGP_AJ_P0038841 1700024G13Rik protein_coding protein_coding MGP_AJ_T0038666.1 MGP_AJ_G0021059.1 mouse_genomes_project 14 23161703 23176623 - MGP_AJ_P0038666 Itih3 protein_coding unknown_likely_coding MGP_AJ_T0038667.1 MGP_AJ_G0021059.1 mouse_genomes_project 14 23161706 23176834 - MGP_AJ_P0038667 Itih3 protein_coding protein_coding MGP_AJ_T0038668.1 MGP_AJ_G0021059.1 mouse_genomes_project 14 23161709 23176661 - Itih3 protein_coding retained_intron MGP_AJ_T0038669.1 MGP_AJ_G0021059.1 mouse_genomes_project 14 23161816 23176623 - MGP_AJ_P0038669 Itih3 protein_coding protein_coding MGP_AJ_T0038670.1 MGP_AJ_G0021059.1 mouse_genomes_project 14 23162971 23168471 - MGP_AJ_P0038670 Itih3 protein_coding protein_coding MGP_AJ_T0038671.1 MGP_AJ_G0021059.1 mouse_genomes_project 14 23165045 23167213 - Itih3 protein_coding retained_intron MGP_AJ_T0099527.1 MGP_AJ_G0037493.1 mouse_genomes_project 14 108183083 108183189 - Gm24073 snRNA snRNA MGP_AJ_T0039646.1 MGP_AJ_G0021358.1 mouse_genomes_project 14 49992760 50067835 + MGP_AJ_P0039646 Zmym2 protein_coding unknown_likely_coding MGP_AJ_T0012984.1 MGP_AJ_G0011079.1 mouse_genomes_project 14 15023385 15023757 - processed_pseudogene processed_pseudogene MGP_AJ_T0039194.1 MGP_AJ_G0021231.1 mouse_genomes_project 14 43781709 43782468 + MGP_AJ_P0039194 Rnase2b protein_coding protein_coding MGP_AJ_T0039775.1 MGP_AJ_G0021406.1 mouse_genomes_project 14 55728736 55763447 + Fam124a protein_coding processed_transcript MGP_AJ_T0039776.1 MGP_AJ_G0021406.1 mouse_genomes_project 14 55728736 55780966 + Fam124a protein_coding processed_transcript MGP_AJ_T0039777.1 MGP_AJ_G0021406.1 mouse_genomes_project 14 55728736 55783501 + MGP_AJ_P0039777 Fam124a protein_coding protein_coding MGP_AJ_T0039778.1 MGP_AJ_G0021406.1 mouse_genomes_project 14 55728774 55738147 + Fam124a protein_coding processed_transcript MGP_AJ_T0002641.1 MGP_AJ_G0002531.1 mouse_genomes_project 14 46573588 46577123 + MGP_AJ_P0002641 TR_V_gene TR_V_gene MGP_AJ_T0002642.1 MGP_AJ_G0002531.1 mouse_genomes_project 14 46573677 46577123 + MGP_AJ_P0002642 TR_V_gene TR_V_gene MGP_AJ_T0039977.1 MGP_AJ_G0021489.1 mouse_genomes_project 14 63401425 63417055 - MGP_AJ_P0039977 Ccar2 protein_coding protein_coding MGP_AJ_T0098587.1 MGP_AJ_G0036571.1 mouse_genomes_project 14 69006179 69006271 - Gm24876 rRNA rRNA MGP_AJ_T0002623.1 MGP_AJ_G0002517.1 mouse_genomes_project 14 45987218 45992948 + MGP_AJ_P0002623 TR_V_gene TR_V_gene MGP_AJ_T0039941.1 MGP_AJ_G0021470.1 mouse_genomes_project 14 61813801 61832494 - MGP_AJ_P0039941 Adamdec1 protein_coding protein_coding MGP_AJ_T0099496.1 MGP_AJ_G0037462.1 mouse_genomes_project 14 43342099 43342206 + Gm24316 snRNA snRNA MGP_AJ_T0038628.1 MGP_AJ_G0021053.1 mouse_genomes_project 14 22846182 22861967 - MGP_AJ_P0038628 Prkcd protein_coding unknown_likely_coding MGP_AJ_T0038629.1 MGP_AJ_G0021053.1 mouse_genomes_project 14 22846190 22877876 - MGP_AJ_P0038629 Prkcd protein_coding protein_coding MGP_AJ_T0038630.1 MGP_AJ_G0021053.1 mouse_genomes_project 14 22846190 22877876 - MGP_AJ_P0038630 Prkcd protein_coding protein_coding MGP_AJ_T0038631.1 MGP_AJ_G0021053.1 mouse_genomes_project 14 22846192 22861967 - MGP_AJ_P0038631 Prkcd protein_coding protein_coding MGP_AJ_T0038632.1 MGP_AJ_G0021053.1 mouse_genomes_project 14 22846203 22877878 - MGP_AJ_P0038632 Prkcd protein_coding protein_coding MGP_AJ_T0038633.1 MGP_AJ_G0021053.1 mouse_genomes_project 14 22846429 22859487 - MGP_AJ_P0038633 Prkcd protein_coding protein_coding MGP_AJ_T0038634.1 MGP_AJ_G0021053.1 mouse_genomes_project 14 22846431 22859487 - MGP_AJ_P0038634 Prkcd protein_coding protein_coding MGP_AJ_T0038635.1 MGP_AJ_G0021053.1 mouse_genomes_project 14 22846490 22850945 - Prkcd protein_coding retained_intron MGP_AJ_T0038636.1 MGP_AJ_G0021053.1 mouse_genomes_project 14 22849239 22859487 - MGP_AJ_P0038636 Prkcd protein_coding protein_coding MGP_AJ_T0038637.1 MGP_AJ_G0021053.1 mouse_genomes_project 14 22849239 22859487 - MGP_AJ_P0038637 Prkcd protein_coding protein_coding MGP_AJ_T0038638.1 MGP_AJ_G0021053.1 mouse_genomes_project 14 22850945 22877840 - Prkcd protein_coding retained_intron MGP_AJ_T0038639.1 MGP_AJ_G0021053.1 mouse_genomes_project 14 22853074 22857534 - Prkcd protein_coding retained_intron MGP_AJ_T0038640.1 MGP_AJ_G0021053.1 mouse_genomes_project 14 22853169 22857343 - Prkcd protein_coding retained_intron MGP_AJ_T0038641.1 MGP_AJ_G0021053.1 mouse_genomes_project 14 22854720 22859009 - Prkcd protein_coding retained_intron MGP_AJ_T0039826.1 MGP_AJ_G0021429.1 mouse_genomes_project 14 57300625 57312875 + MGP_AJ_P0039826 Prss51 protein_coding protein_coding MGP_AJ_T0039827.1 MGP_AJ_G0021429.1 mouse_genomes_project 14 57308047 57312871 + MGP_AJ_P0039827 Prss51 protein_coding protein_coding MGP_AJ_T0039828.1 MGP_AJ_G0021429.1 mouse_genomes_project 14 57308077 57312313 + MGP_AJ_P0039828 Prss51 protein_coding protein_coding MGP_AJ_T0099493.1 MGP_AJ_G0037459.1 mouse_genomes_project 14 41545563 41545683 - Gm23470 snRNA snRNA MGP_AJ_T0002532.1 MGP_AJ_G0002434.1 mouse_genomes_project 14 47210085 47210144 + MGP_AJ_P0002532 Traj30 TR_J_gene TR_J_gene MGP_AJ_T0040222.1 MGP_AJ_G0021575.1 mouse_genomes_project 14 92334378 92491043 + MGP_AJ_P0040222 protein_coding protein_coding MGP_AJ_T0099490.1 MGP_AJ_G0037456.1 mouse_genomes_project 14 41185212 41185316 + Gm23469 snRNA snRNA MGP_AJ_T0040027.1 MGP_AJ_G0021506.1 mouse_genomes_project 14 63905143 63911209 - MGP_AJ_P0040027 Fgf17 protein_coding protein_coding MGP_AJ_T0003531.1 MGP_AJ_G0003206.1 mouse_genomes_project 14 18832016 18842815 - Arf4os antisense antisense MGP_AJ_T0039297.1 MGP_AJ_G0021252.1 mouse_genomes_project 14 45096805 45112813 + MGP_AJ_P0039297 Tox4 protein_coding protein_coding MGP_AJ_T0039298.1 MGP_AJ_G0021252.1 mouse_genomes_project 14 45097224 45108767 + Tox4 protein_coding retained_intron MGP_AJ_T0039299.1 MGP_AJ_G0021252.1 mouse_genomes_project 14 45097276 45097772 + Tox4 protein_coding retained_intron MGP_AJ_T0039300.1 MGP_AJ_G0021252.1 mouse_genomes_project 14 45097391 45104629 + Tox4 protein_coding retained_intron MGP_AJ_T0039301.1 MGP_AJ_G0021252.1 mouse_genomes_project 14 45103012 45104249 + Tox4 protein_coding processed_transcript MGP_AJ_T0039785.1 MGP_AJ_G0021412.1 mouse_genomes_project 14 56201986 56208420 + MGP_AJ_P0039785 Defb43 protein_coding protein_coding MGP_AJ_T0039556.1 MGP_AJ_G0021316.1 mouse_genomes_project 14 48674243 48684528 - MGP_AJ_P0039556 Ipo4 protein_coding protein_coding MGP_AJ_T0039557.1 MGP_AJ_G0021316.1 mouse_genomes_project 14 48674477 48684475 - MGP_AJ_P0039557 Ipo4 protein_coding nonsense_mediated_decay MGP_AJ_T0039558.1 MGP_AJ_G0021316.1 mouse_genomes_project 14 48674559 48675276 - Ipo4 protein_coding retained_intron MGP_AJ_T0039559.1 MGP_AJ_G0021316.1 mouse_genomes_project 14 48674562 48676407 - Ipo4 protein_coding processed_transcript MGP_AJ_T0039560.1 MGP_AJ_G0021316.1 mouse_genomes_project 14 48674565 48675261 - Ipo4 protein_coding processed_transcript MGP_AJ_T0039561.1 MGP_AJ_G0021316.1 mouse_genomes_project 14 48674567 48676234 - Ipo4 protein_coding retained_intron MGP_AJ_T0039562.1 MGP_AJ_G0021316.1 mouse_genomes_project 14 48674583 48684801 - MGP_AJ_P0039562 Ipo4 protein_coding nonsense_mediated_decay MGP_AJ_T0039563.1 MGP_AJ_G0021316.1 mouse_genomes_project 14 48674739 48686739 - Ipo4 protein_coding processed_transcript MGP_AJ_T0039564.1 MGP_AJ_G0021316.1 mouse_genomes_project 14 48676141 48676768 - Ipo4 protein_coding retained_intron MGP_AJ_T0039565.1 MGP_AJ_G0021316.1 mouse_genomes_project 14 48677626 48679504 - Ipo4 protein_coding retained_intron MGP_AJ_T0039566.1 MGP_AJ_G0021316.1 mouse_genomes_project 14 48681771 48682502 - Ipo4 protein_coding retained_intron MGP_AJ_T0039567.1 MGP_AJ_G0021316.1 mouse_genomes_project 14 48682600 48684054 - Ipo4 protein_coding retained_intron MGP_AJ_T0039568.1 MGP_AJ_G0021316.1 mouse_genomes_project 14 48682891 48684413 - Ipo4 protein_coding retained_intron MGP_AJ_T0003511.1 MGP_AJ_G0003195.1 mouse_genomes_project 14 3032982 3070203 + Fhitos antisense antisense MGP_AJ_T0039833.1 MGP_AJ_G0021433.1 mouse_genomes_project 14 58028139 58166770 - MGP_AJ_P0039833 Hmbox1 protein_coding protein_coding MGP_AJ_T0039834.1 MGP_AJ_G0021433.1 mouse_genomes_project 14 58031166 58038887 - Hmbox1 protein_coding processed_transcript MGP_AJ_T0039835.1 MGP_AJ_G0021433.1 mouse_genomes_project 14 58038808 58166767 - MGP_AJ_P0039835 Hmbox1 protein_coding protein_coding MGP_AJ_T0039836.1 MGP_AJ_G0021433.1 mouse_genomes_project 14 58038808 58166791 - MGP_AJ_P0039836 Hmbox1 protein_coding protein_coding MGP_AJ_T0039837.1 MGP_AJ_G0021433.1 mouse_genomes_project 14 58039404 58166552 - MGP_AJ_P0039837 Hmbox1 protein_coding protein_coding MGP_AJ_T0039838.1 MGP_AJ_G0021433.1 mouse_genomes_project 14 58039759 58120075 - MGP_AJ_P0039838 Hmbox1 protein_coding protein_coding MGP_AJ_T0039839.1 MGP_AJ_G0021433.1 mouse_genomes_project 14 58041649 58166776 - MGP_AJ_P0039839 Hmbox1 protein_coding protein_coding MGP_AJ_T0039840.1 MGP_AJ_G0021433.1 mouse_genomes_project 14 58041896 58166767 - MGP_AJ_P0039840 Hmbox1 protein_coding protein_coding MGP_AJ_T0039841.1 MGP_AJ_G0021433.1 mouse_genomes_project 14 58041929 58166767 - MGP_AJ_P0039841 Hmbox1 protein_coding protein_coding MGP_AJ_T0039842.1 MGP_AJ_G0021433.1 mouse_genomes_project 14 58100580 58166767 - Hmbox1 protein_coding retained_intron MGP_AJ_T0039692.1 MGP_AJ_G0021376.1 mouse_genomes_project 14 51090236 51175035 - MGP_AJ_P0039692 Micu2 protein_coding protein_coding MGP_AJ_T0002581.1 MGP_AJ_G0002481.1 mouse_genomes_project 14 47239093 47239122 + TR_J_pseudogene TR_J_pseudogene MGP_AJ_T0039628.1 MGP_AJ_G0021349.1 mouse_genomes_project 14 49309351 49316524 - MGP_AJ_P0039628 Gzmc protein_coding protein_coding MGP_AJ_T0013024.1 MGP_AJ_G0011119.1 mouse_genomes_project 14 52588606 52588901 - processed_pseudogene processed_pseudogene MGP_AJ_T0002656.1 MGP_AJ_G0002540.1 mouse_genomes_project 14 46905553 46906324 + MGP_AJ_P0002656 Trav21-dv12 TR_V_gene TR_V_gene MGP_AJ_T0013011.1 MGP_AJ_G0011106.1 mouse_genomes_project 14 45479436 45479661 + processed_pseudogene processed_pseudogene MGP_AJ_T0039593.1 MGP_AJ_G0021324.1 mouse_genomes_project 14 48769692 48776017 - MGP_AJ_P0039593 Rabggta protein_coding protein_coding MGP_AJ_T0039594.1 MGP_AJ_G0021324.1 mouse_genomes_project 14 48769696 48775995 - MGP_AJ_P0039594 Rabggta protein_coding protein_coding MGP_AJ_T0039595.1 MGP_AJ_G0021324.1 mouse_genomes_project 14 48770144 48776076 - MGP_AJ_P0039595 Rabggta protein_coding protein_coding MGP_AJ_T0000911.1 MGP_AJ_G0000845.1 mouse_genomes_project 14 48103171 48105353 - TEC TEC MGP_AJ_T0038855.1 MGP_AJ_G0021102.1 mouse_genomes_project 14 25264609 25288462 + MGP_AJ_P0038855 Lrrc18 protein_coding protein_coding MGP_AJ_T0038856.1 MGP_AJ_G0021102.1 mouse_genomes_project 14 25264625 25282566 + MGP_AJ_P0038856 Lrrc18 protein_coding protein_coding MGP_AJ_T0038857.1 MGP_AJ_G0021102.1 mouse_genomes_project 14 25264630 25281848 + MGP_AJ_P0038857 Lrrc18 protein_coding protein_coding MGP_AJ_T0038858.1 MGP_AJ_G0021102.1 mouse_genomes_project 14 25264673 25282009 + MGP_AJ_P0038858 Lrrc18 protein_coding protein_coding MGP_AJ_T0038859.1 MGP_AJ_G0021102.1 mouse_genomes_project 14 25264685 25287325 + MGP_AJ_P0038859 Lrrc18 protein_coding protein_coding MGP_AJ_T0038860.1 MGP_AJ_G0021102.1 mouse_genomes_project 14 25268492 25281629 + Lrrc18 protein_coding processed_transcript MGP_AJ_T0039813.1 MGP_AJ_G0021422.1 mouse_genomes_project 14 56734065 56754362 - MGP_AJ_P0039813 Mtmr9 protein_coding protein_coding MGP_AJ_T0100766.1 MGP_AJ_G0038732.1 mouse_genomes_project 14 26381006 26381095 + Gm24998 snoRNA snoRNA MGP_AJ_T0100759.1 MGP_AJ_G0038725.1 mouse_genomes_project 14 18698495 18698626 + Gm24031 snoRNA snoRNA MGP_AJ_T0039143.1 MGP_AJ_G0021205.1 mouse_genomes_project 14 43245507 43246680 + MGP_AJ_P0039143 Olfr745 protein_coding protein_coding MGP_AJ_T0039717.1 MGP_AJ_G0021383.1 mouse_genomes_project 14 52576073 52614836 - MGP_AJ_P0039717 protein_coding protein_coding MGP_AJ_T0039718.1 MGP_AJ_G0021383.1 mouse_genomes_project 14 52576075 52614829 - MGP_AJ_P0039718 protein_coding protein_coding MGP_AJ_T0039719.1 MGP_AJ_G0021383.1 mouse_genomes_project 14 52576328 52583992 - protein_coding retained_intron MGP_AJ_T0039720.1 MGP_AJ_G0021383.1 mouse_genomes_project 14 52596857 52614827 - MGP_AJ_P0039720 protein_coding protein_coding MGP_AJ_T0039721.1 MGP_AJ_G0021383.1 mouse_genomes_project 14 52605097 52614825 - protein_coding processed_transcript MGP_AJ_T0039225.1 MGP_AJ_G0021242.1 mouse_genomes_project 14 44749901 44750515 - MGP_AJ_P0039225 Rnase13 protein_coding protein_coding MGP_AJ_T0000909.1 MGP_AJ_G0000843.1 mouse_genomes_project 14 45191051 45193395 - TEC TEC MGP_AJ_T0099511.1 MGP_AJ_G0037477.1 mouse_genomes_project 14 82757157 82757273 + Gm25886 snRNA snRNA MGP_AJ_T0039115.1 MGP_AJ_G0021182.1 mouse_genomes_project 14 42223882 42329115 - MGP_AJ_P0039115 3632451O06Rik protein_coding protein_coding MGP_AJ_T0039116.1 MGP_AJ_G0021182.1 mouse_genomes_project 14 42223990 42329103 - MGP_AJ_P0039116 3632451O06Rik protein_coding protein_coding MGP_AJ_T0039117.1 MGP_AJ_G0021182.1 mouse_genomes_project 14 42271751 42294370 - 3632451O06Rik protein_coding processed_transcript MGP_AJ_T0012979.1 MGP_AJ_G0011074.1 mouse_genomes_project 14 11023417 11026622 - processed_pseudogene processed_pseudogene MGP_AJ_T0017370.1 MGP_AJ_G0015239.1 mouse_genomes_project 14 39468 87985 - Gm10044 processed_transcript antisense MGP_AJ_T0017372.1 MGP_AJ_G0015239.1 mouse_genomes_project 14 51625 87909 - Gm10044 processed_transcript antisense MGP_AJ_T0017373.1 MGP_AJ_G0015239.1 mouse_genomes_project 14 60261 70949 - Gm10044 processed_transcript antisense MGP_AJ_T0017374.1 MGP_AJ_G0015239.1 mouse_genomes_project 14 67826 71019 - Gm10044 processed_transcript retained_intron MGP_AJ_T0017375.1 MGP_AJ_G0015239.1 mouse_genomes_project 14 68059 87887 - Gm10044 processed_transcript antisense MGP_AJ_T0040301.1 MGP_AJ_G0021599.1 mouse_genomes_project 14 102118123 102122372 - MGP_AJ_P0040301 Slitrk1 protein_coding protein_coding MGP_AJ_T0039322.1 MGP_AJ_G0021257.1 mouse_genomes_project 14 45206106 45248273 - MGP_AJ_P0039322 protein_coding protein_coding MGP_AJ_T0013047.1 MGP_AJ_G0011142.1 mouse_genomes_project 14 98498069 98498626 - processed_pseudogene processed_pseudogene MGP_AJ_T0039672.1 MGP_AJ_G0021371.1 mouse_genomes_project 14 50809423 50915794 - MGP_AJ_P0039672 Lats2 protein_coding nonsense_mediated_decay MGP_AJ_T0039675.1 MGP_AJ_G0021371.1 mouse_genomes_project 14 50857056 50915814 - MGP_AJ_P0039675 Lats2 protein_coding protein_coding MGP_AJ_T0039676.1 MGP_AJ_G0021371.1 mouse_genomes_project 14 50858492 50915812 - MGP_AJ_P0039676 Lats2 protein_coding nonsense_mediated_decay MGP_AJ_T0039677.1 MGP_AJ_G0021371.1 mouse_genomes_project 14 50861806 50915796 - MGP_AJ_P0039677 Lats2 protein_coding protein_coding MGP_AJ_T0039678.1 MGP_AJ_G0021371.1 mouse_genomes_project 14 50865489 50868154 - MGP_AJ_P0039678 Lats2 protein_coding protein_coding MGP_AJ_T0039679.1 MGP_AJ_G0021371.1 mouse_genomes_project 14 50871671 50928079 - MGP_AJ_P0039679 Lats2 protein_coding protein_coding MGP_AJ_T0039680.1 MGP_AJ_G0021371.1 mouse_genomes_project 14 50892097 50904080 - MGP_AJ_P0039680 Lats2 protein_coding protein_coding MGP_AJ_T0039681.1 MGP_AJ_G0021371.1 mouse_genomes_project 14 50892097 50904080 - MGP_AJ_P0039681 Lats2 protein_coding protein_coding MGP_AJ_T0039682.1 MGP_AJ_G0021371.1 mouse_genomes_project 14 50903959 50914345 - MGP_AJ_P0039682 Lats2 protein_coding protein_coding MGP_AJ_T0039683.1 MGP_AJ_G0021371.1 mouse_genomes_project 14 50904032 50916269 - Lats2 protein_coding processed_transcript MGP_AJ_T0098585.1 MGP_AJ_G0036569.1 mouse_genomes_project 14 59810892 59810982 - Gm23899 rRNA rRNA MGP_AJ_T0039877.1 MGP_AJ_G0021451.1 mouse_genomes_project 14 59360970 59377106 + MGP_AJ_P0039877 Chrna2 protein_coding protein_coding MGP_AJ_T0039878.1 MGP_AJ_G0021451.1 mouse_genomes_project 14 59366864 59378887 + MGP_AJ_P0039878 Chrna2 protein_coding protein_coding MGP_AJ_T0038707.1 MGP_AJ_G0021067.1 mouse_genomes_project 14 23385160 23392874 + MGP_AJ_P0038707 Nt5dc2 protein_coding protein_coding MGP_AJ_T0002577.1 MGP_AJ_G0002477.1 mouse_genomes_project 14 47186574 47186617 + TR_J_pseudogene TR_J_pseudogene MGP_AJ_T0038332.1 MGP_AJ_G0020970.1 mouse_genomes_project 14 10579016 10628098 - MGP_AJ_P0038332 Ube2e1 protein_coding protein_coding MGP_AJ_T0038333.1 MGP_AJ_G0020970.1 mouse_genomes_project 14 10580587 10626670 - Ube2e1 protein_coding retained_intron MGP_AJ_T0038334.1 MGP_AJ_G0020970.1 mouse_genomes_project 14 10580887 10622999 - Ube2e1 protein_coding processed_transcript MGP_AJ_T0038335.1 MGP_AJ_G0020970.1 mouse_genomes_project 14 10619561 10627312 - Ube2e1 protein_coding retained_intron MGP_AJ_T0038515.1 MGP_AJ_G0021016.1 mouse_genomes_project 14 18190926 18241824 - MGP_AJ_P0038515 Zcchc24 protein_coding protein_coding MGP_AJ_T0038516.1 MGP_AJ_G0021016.1 mouse_genomes_project 14 18190928 18199080 - Zcchc24 protein_coding retained_intron MGP_AJ_T0039621.1 MGP_AJ_G0021342.1 mouse_genomes_project 14 49161051 49164102 - MGP_AJ_P0039621 Mcpt8 protein_coding protein_coding MGP_AJ_T0038361.1 MGP_AJ_G0020977.1 mouse_genomes_project 14 12591170 12633123 - MGP_AJ_P0038361 Kcnk5 protein_coding protein_coding MGP_AJ_T0006727.1 MGP_AJ_G0005551.1 mouse_genomes_project 14 64115571 64139660 + 2410012E07Rik lincRNA lincRNA MGP_AJ_T0038761.1 MGP_AJ_G0021076.1 mouse_genomes_project 14 23614413 23691225 - MGP_AJ_P0038761 Sh3bp5 protein_coding nonsense_mediated_decay MGP_AJ_T0038762.1 MGP_AJ_G0021076.1 mouse_genomes_project 14 23628320 23672207 - MGP_AJ_P0038762 Sh3bp5 protein_coding protein_coding MGP_AJ_T0038763.1 MGP_AJ_G0021076.1 mouse_genomes_project 14 23628320 23691212 - MGP_AJ_P0038763 Sh3bp5 protein_coding protein_coding MGP_AJ_T0038764.1 MGP_AJ_G0021076.1 mouse_genomes_project 14 23632130 23661915 - Sh3bp5 protein_coding processed_transcript MGP_AJ_T0038293.1 MGP_AJ_G0020960.1 mouse_genomes_project 14 7175953 7364276 + MGP_AJ_P0038293 Nek10 protein_coding protein_coding MGP_AJ_T0038294.1 MGP_AJ_G0020960.1 mouse_genomes_project 14 7176003 7368065 + MGP_AJ_P0038294 Nek10 protein_coding unknown_likely_coding MGP_AJ_T0038295.1 MGP_AJ_G0020960.1 mouse_genomes_project 14 7176003 7368065 + MGP_AJ_P0038295 Nek10 protein_coding protein_coding MGP_AJ_T0038296.1 MGP_AJ_G0020960.1 mouse_genomes_project 14 7219404 7332478 + Nek10 protein_coding processed_transcript MGP_AJ_T0038297.1 MGP_AJ_G0020960.1 mouse_genomes_project 14 7223693 7334228 + Nek10 protein_coding retained_intron MGP_AJ_T0038298.1 MGP_AJ_G0020960.1 mouse_genomes_project 14 7291180 7368115 + MGP_AJ_P0038298 Nek10 protein_coding nonsense_mediated_decay MGP_AJ_T0039764.1 MGP_AJ_G0021401.1 mouse_genomes_project 14 54697583 54722189 - MGP_AJ_P0039764 Spryd7 protein_coding protein_coding MGP_AJ_T0039765.1 MGP_AJ_G0021401.1 mouse_genomes_project 14 54699895 54722061 - MGP_AJ_P0039765 Spryd7 protein_coding protein_coding MGP_AJ_T0013004.1 MGP_AJ_G0011099.1 mouse_genomes_project 14 42253715 42255047 - processed_pseudogene processed_pseudogene MGP_AJ_T0039253.1 MGP_AJ_G0021245.1 mouse_genomes_project 14 44837738 44840637 + MGP_AJ_P0039253 Tmem253 protein_coding protein_coding MGP_AJ_T0013038.1 MGP_AJ_G0011133.1 mouse_genomes_project 14 91385185 91385683 + processed_pseudogene processed_pseudogene MGP_AJ_T0100790.1 MGP_AJ_G0038756.1 mouse_genomes_project 14 80653668 80653811 + Gm23278 snoRNA snoRNA MGP_AJ_T0010019.1 MGP_AJ_G0008141.1 mouse_genomes_project 14 108246863 108246945 + Mir19a miRNA miRNA MGP_AJ_T0038242.1 MGP_AJ_G0020940.1 mouse_genomes_project 14 609069 622554 - MGP_AJ_P0038242 Fam107a protein_coding protein_coding MGP_AJ_T0038243.1 MGP_AJ_G0020940.1 mouse_genomes_project 14 609069 622556 - MGP_AJ_P0038243 Fam107a protein_coding protein_coding MGP_AJ_T0038244.1 MGP_AJ_G0020940.1 mouse_genomes_project 14 610352 630819 - MGP_AJ_P0038244 Fam107a protein_coding protein_coding MGP_AJ_T0038245.1 MGP_AJ_G0020940.1 mouse_genomes_project 14 612317 622572 - MGP_AJ_P0038245 Fam107a protein_coding protein_coding MGP_AJ_T0040305.1 MGP_AJ_G0021603.1 mouse_genomes_project 14 108300146 108335370 + Gpc5 protein_coding retained_intron MGP_AJ_T0040306.1 MGP_AJ_G0021603.1 mouse_genomes_project 14 108300181 109702958 + MGP_AJ_P0040306 Gpc5 protein_coding protein_coding MGP_AJ_T0040307.1 MGP_AJ_G0021603.1 mouse_genomes_project 14 108300203 108609871 + MGP_AJ_P0040307 Gpc5 protein_coding protein_coding MGP_AJ_T0040308.1 MGP_AJ_G0021603.1 mouse_genomes_project 14 108300557 109702216 + MGP_AJ_P0040308 Gpc5 protein_coding protein_coding MGP_AJ_T0038473.1 MGP_AJ_G0021009.1 mouse_genomes_project 14 15757401 16265928 - MGP_AJ_P0038473 Kcnma1 protein_coding protein_coding MGP_AJ_T0038474.1 MGP_AJ_G0021009.1 mouse_genomes_project 14 15757401 16265928 - MGP_AJ_P0038474 Kcnma1 protein_coding protein_coding MGP_AJ_T0038475.1 MGP_AJ_G0021009.1 mouse_genomes_project 14 15766664 16265928 - MGP_AJ_P0038475 Kcnma1 protein_coding protein_coding MGP_AJ_T0038476.1 MGP_AJ_G0021009.1 mouse_genomes_project 14 15766664 16265928 - MGP_AJ_P0038476 Kcnma1 protein_coding protein_coding MGP_AJ_T0038477.1 MGP_AJ_G0021009.1 mouse_genomes_project 14 15766664 16265928 - MGP_AJ_P0038477 Kcnma1 protein_coding protein_coding MGP_AJ_T0038478.1 MGP_AJ_G0021009.1 mouse_genomes_project 14 15767351 16471100 - MGP_AJ_P0038478 Kcnma1 protein_coding protein_coding MGP_AJ_T0038479.1 MGP_AJ_G0021009.1 mouse_genomes_project 14 15767365 16111681 - MGP_AJ_P0038479 Kcnma1 protein_coding protein_coding MGP_AJ_T0038480.1 MGP_AJ_G0021009.1 mouse_genomes_project 14 15767365 16471754 - MGP_AJ_P0038480 Kcnma1 protein_coding protein_coding MGP_AJ_T0038481.1 MGP_AJ_G0021009.1 mouse_genomes_project 14 15767365 16265928 - MGP_AJ_P0038481 Kcnma1 protein_coding protein_coding MGP_AJ_T0038482.1 MGP_AJ_G0021009.1 mouse_genomes_project 14 15767861 16470872 - MGP_AJ_P0038482 Kcnma1 protein_coding nonsense_mediated_decay MGP_AJ_T0038483.1 MGP_AJ_G0021009.1 mouse_genomes_project 14 15767861 16471100 - MGP_AJ_P0038483 Kcnma1 protein_coding protein_coding MGP_AJ_T0038484.1 MGP_AJ_G0021009.1 mouse_genomes_project 14 15767991 16471020 - MGP_AJ_P0038484 Kcnma1 protein_coding protein_coding MGP_AJ_T0038485.1 MGP_AJ_G0021009.1 mouse_genomes_project 14 15776995 16265928 - MGP_AJ_P0038485 Kcnma1 protein_coding protein_coding MGP_AJ_T0038486.1 MGP_AJ_G0021009.1 mouse_genomes_project 14 15776995 16265928 - MGP_AJ_P0038486 Kcnma1 protein_coding protein_coding MGP_AJ_T0038487.1 MGP_AJ_G0021009.1 mouse_genomes_project 14 16469550 16471193 - MGP_AJ_P0038487 Kcnma1 protein_coding protein_coding MGP_AJ_T0039030.1 MGP_AJ_G0021165.1 mouse_genomes_project 14 39644616 39680065 - MGP_AJ_P0039030 Gch1 protein_coding protein_coding MGP_AJ_T0040121.1 MGP_AJ_G0021532.1 mouse_genomes_project 14 69022320 69046737 - MGP_AJ_P0040121 Slc25a30 protein_coding protein_coding MGP_AJ_T0002606.1 MGP_AJ_G0002500.1 mouse_genomes_project 14 45655638 45656188 + MGP_AJ_P0002606 TR_V_gene TR_V_gene MGP_AJ_T0038789.1 MGP_AJ_G0021082.1 mouse_genomes_project 14 23958942 24041191 - MGP_AJ_P0038789 Ankrd28 protein_coding unknown_likely_coding MGP_AJ_T0038790.1 MGP_AJ_G0021082.1 mouse_genomes_project 14 23960193 24091304 - MGP_AJ_P0038790 Ankrd28 protein_coding protein_coding MGP_AJ_T0038882.1 MGP_AJ_G0021106.1 mouse_genomes_project 14 25866138 25919189 + MGP_AJ_P0038882 Ptpn20 protein_coding protein_coding MGP_AJ_T0038888.1 MGP_AJ_G0021112.1 mouse_genomes_project 14 26322799 26377605 - MGP_AJ_P0038888 A630023A22Rik protein_coding protein_coding MGP_AJ_T0013046.1 MGP_AJ_G0011141.1 mouse_genomes_project 14 96208246 96208719 + processed_pseudogene processed_pseudogene MGP_AJ_T0002503.1 MGP_AJ_G0002409.1 mouse_genomes_project 14 47176353 47176417 + Traj59 TR_J_gene processed_transcript MGP_AJ_T0002504.1 MGP_AJ_G0002409.1 mouse_genomes_project 14 47176353 47176415 + MGP_AJ_P0002504 Traj59 TR_J_gene TR_J_gene MGP_AJ_T0040358.1 MGP_AJ_G0021625.1 mouse_genomes_project 14 115131699 115136027 - MGP_AJ_P0040358 Gpr18 protein_coding protein_coding MGP_AJ_T0039610.1 MGP_AJ_G0021333.1 mouse_genomes_project 14 48902202 48922462 + MGP_AJ_P0039610 Nynrin protein_coding protein_coding MGP_AJ_T0039611.1 MGP_AJ_G0021333.1 mouse_genomes_project 14 48902281 48922906 + MGP_AJ_P0039611 Nynrin protein_coding protein_coding MGP_AJ_T0039541.1 MGP_AJ_G0021313.1 mouse_genomes_project 14 48639755 48651735 + MGP_AJ_P0039541 Rnf31 protein_coding protein_coding MGP_AJ_T0039542.1 MGP_AJ_G0021313.1 mouse_genomes_project 14 48639791 48645696 + MGP_AJ_P0039542 Rnf31 protein_coding nonsense_mediated_decay MGP_AJ_T0039543.1 MGP_AJ_G0021313.1 mouse_genomes_project 14 48640322 48651706 + MGP_AJ_P0039543 Rnf31 protein_coding protein_coding MGP_AJ_T0039544.1 MGP_AJ_G0021313.1 mouse_genomes_project 14 48640514 48640988 + Rnf31 protein_coding retained_intron MGP_AJ_T0039545.1 MGP_AJ_G0021313.1 mouse_genomes_project 14 48646426 48646992 + Rnf31 protein_coding retained_intron MGP_AJ_T0040220.1 MGP_AJ_G0021573.1 mouse_genomes_project 14 92279392 92309480 + MGP_AJ_P0040220 Bora protein_coding protein_coding MGP_AJ_T0006689.1 MGP_AJ_G0005524.1 mouse_genomes_project 14 38915179 38932970 + Gm15221 lincRNA lincRNA MGP_AJ_T0011366.1 MGP_AJ_G0009488.1 mouse_genomes_project 14 23793285 23793587 - Gm24057 misc_RNA misc_RNA MGP_AJ_T0000916.1 MGP_AJ_G0000850.1 mouse_genomes_project 14 58052500 58055905 - TEC TEC MGP_AJ_T0038246.1 MGP_AJ_G0020941.1 mouse_genomes_project 14 661670 691103 - MGP_AJ_P0038246 Oit1 protein_coding protein_coding MGP_AJ_T0013015.1 MGP_AJ_G0011110.1 mouse_genomes_project 14 46224713 46225025 - processed_pseudogene processed_pseudogene MGP_AJ_T0013013.1 MGP_AJ_G0011108.1 mouse_genomes_project 14 45820341 45820776 - processed_pseudogene processed_pseudogene MGP_AJ_T0039641.1 MGP_AJ_G0021356.1 mouse_genomes_project 14 49808070 49864821 - MGP_AJ_P0039641 Pspc1 protein_coding protein_coding MGP_AJ_T0039642.1 MGP_AJ_G0021356.1 mouse_genomes_project 14 49809615 49864821 - MGP_AJ_P0039642 Pspc1 protein_coding protein_coding MGP_AJ_T0039643.1 MGP_AJ_G0021356.1 mouse_genomes_project 14 49834274 49847719 - Pspc1 protein_coding retained_intron MGP_AJ_T0039644.1 MGP_AJ_G0021356.1 mouse_genomes_project 14 49834597 49864432 - MGP_AJ_P0039644 Pspc1 protein_coding nonsense_mediated_decay MGP_AJ_T0039375.1 MGP_AJ_G0021271.1 mouse_genomes_project 14 47521791 47532143 - MGP_AJ_P0039375 Prmt5 protein_coding protein_coding MGP_AJ_T0039376.1 MGP_AJ_G0021271.1 mouse_genomes_project 14 47525606 47528062 - MGP_AJ_P0039376 Prmt5 protein_coding protein_coding MGP_AJ_T0039377.1 MGP_AJ_G0021271.1 mouse_genomes_project 14 47525811 47532053 - MGP_AJ_P0039377 Prmt5 protein_coding nonsense_mediated_decay MGP_AJ_T0039378.1 MGP_AJ_G0021271.1 mouse_genomes_project 14 47527978 47532011 - Prmt5 protein_coding retained_intron MGP_AJ_T0039379.1 MGP_AJ_G0021271.1 mouse_genomes_project 14 47528543 47532088 - Prmt5 protein_coding retained_intron MGP_AJ_T0039380.1 MGP_AJ_G0021271.1 mouse_genomes_project 14 47529196 47530276 - Prmt5 protein_coding processed_transcript MGP_AJ_T0039381.1 MGP_AJ_G0021271.1 mouse_genomes_project 14 47530768 47531979 - Prmt5 protein_coding processed_transcript MGP_AJ_T0039384.1 MGP_AJ_G0021274.1 mouse_genomes_project 14 47596109 47618090 - MGP_AJ_P0039384 4931414P19Rik protein_coding protein_coding MGP_AJ_T0002578.1 MGP_AJ_G0002478.1 mouse_genomes_project 14 47202691 47202756 + TR_J_pseudogene TR_J_pseudogene MGP_AJ_T0039015.1 MGP_AJ_G0021162.1 mouse_genomes_project 14 39288238 39302089 - MGP_AJ_P0039015 Gmfb protein_coding protein_coding MGP_AJ_T0039016.1 MGP_AJ_G0021162.1 mouse_genomes_project 14 39288238 39302089 - MGP_AJ_P0039016 Gmfb protein_coding protein_coding MGP_AJ_T0039017.1 MGP_AJ_G0021162.1 mouse_genomes_project 14 39294362 39299671 - MGP_AJ_P0039017 Gmfb protein_coding protein_coding MGP_AJ_T0039625.1 MGP_AJ_G0021346.1 mouse_genomes_project 14 49241051 49251142 - MGP_AJ_P0039625 Gzmg protein_coding protein_coding MGP_AJ_T0002600.1 MGP_AJ_G0002495.1 mouse_genomes_project 14 45518835 45519361 + MGP_AJ_P0002600 Trav4-2 TR_V_gene TR_V_gene MGP_AJ_T0039136.1 MGP_AJ_G0021198.1 mouse_genomes_project 14 42997789 42998725 + MGP_AJ_P0039136 Olfr738 protein_coding protein_coding MGP_AJ_T0100806.1 MGP_AJ_G0038772.1 mouse_genomes_project 14 99702927 99703034 - Gm24634 snoRNA snoRNA MGP_AJ_T0040047.1 MGP_AJ_G0021512.1 mouse_genomes_project 14 66283143 66303120 - MGP_AJ_P0040047 Cysltr2 protein_coding protein_coding MGP_AJ_T0040048.1 MGP_AJ_G0021512.1 mouse_genomes_project 14 66283143 66303120 - MGP_AJ_P0040048 Cysltr2 protein_coding protein_coding MGP_AJ_T0038890.1 MGP_AJ_G0021114.1 mouse_genomes_project 14 26360831 26375422 + MGP_AJ_P0038890 Anxa8 protein_coding protein_coding MGP_AJ_T0038891.1 MGP_AJ_G0021114.1 mouse_genomes_project 14 26360875 26374872 + MGP_AJ_P0038891 Anxa8 protein_coding protein_coding MGP_AJ_T0038404.1 MGP_AJ_G0020995.1 mouse_genomes_project 14 13179836 13190501 - MGP_AJ_P0038404 Ndst2 protein_coding unknown_likely_coding MGP_AJ_T0040158.1 MGP_AJ_G0021545.1 mouse_genomes_project 14 71188936 71287038 + MGP_AJ_P0040158 Epsti1 protein_coding protein_coding MGP_AJ_T0040159.1 MGP_AJ_G0021545.1 mouse_genomes_project 14 71189104 71248492 + MGP_AJ_P0040159 Epsti1 protein_coding protein_coding MGP_AJ_T0013009.1 MGP_AJ_G0011104.1 mouse_genomes_project 14 45242665 45242950 + processed_pseudogene processed_pseudogene MGP_AJ_T0000925.1 MGP_AJ_G0000859.1 mouse_genomes_project 14 85786371 85786742 + TEC TEC MGP_AJ_T0002649.1 MGP_AJ_G0002535.1 mouse_genomes_project 14 46780558 46781175 + MGP_AJ_P0002649 Trav3-4 TR_V_gene TR_V_gene MGP_AJ_T0009975.1 MGP_AJ_G0008097.1 mouse_genomes_project 14 18873641 18873703 - Mir7672 miRNA miRNA MGP_AJ_T0002501.1 MGP_AJ_G0002407.1 mouse_genomes_project 14 47149539 47149590 + MGP_AJ_P0002501 Trdj1 TR_J_gene TR_J_gene MGP_AJ_T0100811.1 MGP_AJ_G0038777.1 mouse_genomes_project 14 111945193 111945324 + Gm22379 snoRNA snoRNA MGP_AJ_T0039693.1 MGP_AJ_G0021377.1 mouse_genomes_project 14 51243708 51285462 + MGP_AJ_P0039693 Fgf9 protein_coding protein_coding MGP_AJ_T0039694.1 MGP_AJ_G0021377.1 mouse_genomes_project 14 51245850 51283314 + MGP_AJ_P0039694 Fgf9 protein_coding protein_coding MGP_AJ_T0039695.1 MGP_AJ_G0021377.1 mouse_genomes_project 14 51248279 51283314 + MGP_AJ_P0039695 Fgf9 protein_coding protein_coding MGP_AJ_T0039696.1 MGP_AJ_G0021377.1 mouse_genomes_project 14 51249670 51282532 + MGP_AJ_P0039696 Fgf9 protein_coding protein_coding MGP_AJ_T0039443.1 MGP_AJ_G0021293.1 mouse_genomes_project 14 47959428 47986071 - MGP_AJ_P0039443 Myh6 protein_coding protein_coding MGP_AJ_T0039444.1 MGP_AJ_G0021293.1 mouse_genomes_project 14 47959428 47984920 - MGP_AJ_P0039444 Myh6 protein_coding unknown_likely_coding MGP_AJ_T0039445.1 MGP_AJ_G0021293.1 mouse_genomes_project 14 47976860 47977695 - Myh6 protein_coding retained_intron MGP_AJ_T0039446.1 MGP_AJ_G0021293.1 mouse_genomes_project 14 47983433 47986005 - MGP_AJ_P0039446 Myh6 protein_coding protein_coding MGP_AJ_T0039447.1 MGP_AJ_G0021293.1 mouse_genomes_project 14 47983433 47986035 - MGP_AJ_P0039447 Myh6 protein_coding protein_coding MGP_AJ_T0039448.1 MGP_AJ_G0021293.1 mouse_genomes_project 14 47984744 47986357 - MGP_AJ_P0039448 Myh6 protein_coding protein_coding MGP_AJ_T0003517.1 MGP_AJ_G0003199.1 mouse_genomes_project 14 12999357 13018253 + 1810062O18Rik antisense antisense MGP_AJ_T0003518.1 MGP_AJ_G0003199.1 mouse_genomes_project 14 12999392 13023791 + 1810062O18Rik antisense antisense MGP_AJ_T0003519.1 MGP_AJ_G0003199.1 mouse_genomes_project 14 12999535 13018221 + 1810062O18Rik antisense antisense MGP_AJ_T0003520.1 MGP_AJ_G0003199.1 mouse_genomes_project 14 12999571 13023928 + 1810062O18Rik antisense antisense MGP_AJ_T0003521.1 MGP_AJ_G0003199.1 mouse_genomes_project 14 13018258 13023935 + 1810062O18Rik antisense antisense MGP_AJ_T0039329.1 MGP_AJ_G0021260.1 mouse_genomes_project 14 45299588 45304318 - MGP_AJ_P0039329 Olfr1508 protein_coding protein_coding MGP_AJ_T0039330.1 MGP_AJ_G0021260.1 mouse_genomes_project 14 45299942 45304352 - MGP_AJ_P0039330 Olfr1508 protein_coding protein_coding MGP_AJ_T0039331.1 MGP_AJ_G0021260.1 mouse_genomes_project 14 45300410 45303947 - MGP_AJ_P0039331 Olfr1508 protein_coding protein_coding MGP_AJ_T0038401.1 MGP_AJ_G0020992.1 mouse_genomes_project 14 13151276 13156506 + MGP_AJ_P0038401 Fut11 protein_coding protein_coding MGP_AJ_T0012994.1 MGP_AJ_G0011089.1 mouse_genomes_project 14 24532823 24533979 - processed_pseudogene processed_pseudogene MGP_AJ_T0002505.1 MGP_AJ_G0002410.1 mouse_genomes_project 14 47177477 47177540 + MGP_AJ_P0002505 Traj58 TR_J_gene TR_J_gene MGP_AJ_T0038766.1 MGP_AJ_G0021078.1 mouse_genomes_project 14 23751544 23766326 + MGP_AJ_P0038766 Eaf1 protein_coding protein_coding MGP_AJ_T0039852.1 MGP_AJ_G0021441.1 mouse_genomes_project 14 58817807 58868492 + MGP_AJ_P0039852 Nuggc protein_coding protein_coding MGP_AJ_T0039853.1 MGP_AJ_G0021441.1 mouse_genomes_project 14 58824626 58868405 + MGP_AJ_P0039853 Nuggc protein_coding protein_coding MGP_AJ_T0011364.1 MGP_AJ_G0009486.1 mouse_genomes_project 14 10176383 10176709 - Gm24140 misc_RNA misc_RNA MGP_AJ_T0039701.1 MGP_AJ_G0021379.1 mouse_genomes_project 14 52336489 52348331 - MGP_AJ_P0039701 Gm5142 protein_coding protein_coding MGP_AJ_T0039951.1 MGP_AJ_G0021477.1 mouse_genomes_project 14 62546324 62551304 - MGP_AJ_P0039951 Gm27179 protein_coding protein_coding MGP_AJ_T0013036.1 MGP_AJ_G0011131.1 mouse_genomes_project 14 81674614 81675598 - processed_pseudogene processed_pseudogene MGP_AJ_T0039179.1 MGP_AJ_G0021220.1 mouse_genomes_project 14 43608504 43611512 + MGP_AJ_P0039179 Rnase10 protein_coding protein_coding MGP_AJ_T0039180.1 MGP_AJ_G0021220.1 mouse_genomes_project 14 43608682 43611512 + MGP_AJ_P0039180 Rnase10 protein_coding protein_coding MGP_AJ_T0099513.1 MGP_AJ_G0037479.1 mouse_genomes_project 14 89726503 89726619 + Gm24043 snRNA snRNA MGP_AJ_T0006709.1 MGP_AJ_G0005538.1 mouse_genomes_project 14 50739336 50740081 + 1700039M10Rik lincRNA lincRNA MGP_AJ_T0039798.1 MGP_AJ_G0021418.1 mouse_genomes_project 14 56396413 56444137 - MGP_AJ_P0039798 Gata4 protein_coding protein_coding MGP_AJ_T0039799.1 MGP_AJ_G0021418.1 mouse_genomes_project 14 56396417 56444147 - MGP_AJ_P0039799 Gata4 protein_coding protein_coding MGP_AJ_T0039800.1 MGP_AJ_G0021418.1 mouse_genomes_project 14 56396417 56444124 - MGP_AJ_P0039800 Gata4 protein_coding protein_coding MGP_AJ_T0039801.1 MGP_AJ_G0021418.1 mouse_genomes_project 14 56439977 56471939 - MGP_AJ_P0039801 Gata4 protein_coding protein_coding MGP_AJ_T0039802.1 MGP_AJ_G0021418.1 mouse_genomes_project 14 56439990 56471369 - MGP_AJ_P0039802 Gata4 protein_coding protein_coding MGP_AJ_T0039803.1 MGP_AJ_G0021418.1 mouse_genomes_project 14 56439990 56471369 - MGP_AJ_P0039803 Gata4 protein_coding protein_coding MGP_AJ_T0098918.1 MGP_AJ_G0036898.1 mouse_genomes_project 14 39449851 39453987 + Gm15562 sense_intronic sense_intronic MGP_AJ_T0100799.1 MGP_AJ_G0038765.1 mouse_genomes_project 14 91509798 91509879 - Gm26006 snoRNA snoRNA MGP_AJ_T0040369.1 MGP_AJ_G0021633.1 mouse_genomes_project 14 115729559 115731095 + MGP_AJ_P0040369 Gm10837 protein_coding protein_coding MGP_AJ_T0039937.1 MGP_AJ_G0021468.1 mouse_genomes_project 14 61331436 61336714 + MGP_AJ_P0039937 Nefl protein_coding protein_coding MGP_AJ_T0098591.1 MGP_AJ_G0036575.1 mouse_genomes_project 14 96008365 96008413 + Gm23764 rRNA rRNA MGP_AJ_T0039797.1 MGP_AJ_G0021417.1 mouse_genomes_project 14 56379770 56391037 - MGP_AJ_P0039797 Neil2 protein_coding protein_coding MGP_AJ_T0102330.1 MGP_AJ_G0040072.1 mouse_genomes_project 14 11154225 11154373 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0040024.1 MGP_AJ_G0021505.1 mouse_genomes_project 14 63871265 63899167 - MGP_AJ_P0040024 Dmtn protein_coding protein_coding MGP_AJ_T0040025.1 MGP_AJ_G0021505.1 mouse_genomes_project 14 63871266 63896083 - MGP_AJ_P0040025 Dmtn protein_coding protein_coding MGP_AJ_T0040026.1 MGP_AJ_G0021505.1 mouse_genomes_project 14 63873825 63898000 - MGP_AJ_P0040026 Dmtn protein_coding unknown_likely_coding MGP_AJ_T0039831.1 MGP_AJ_G0021432.1 mouse_genomes_project 14 57865197 58022800 + MGP_AJ_P0039831 Kif13b protein_coding protein_coding MGP_AJ_T0039832.1 MGP_AJ_G0021432.1 mouse_genomes_project 14 57865268 58026124 + MGP_AJ_P0039832 Kif13b protein_coding unknown_likely_coding MGP_AJ_T0039036.1 MGP_AJ_G0021167.1 mouse_genomes_project 14 39773936 39793253 + MGP_AJ_P0039036 Socs4 protein_coding protein_coding MGP_AJ_T0002521.1 MGP_AJ_G0002423.1 mouse_genomes_project 14 47196067 47196131 + MGP_AJ_P0002521 Traj42 TR_J_gene TR_J_gene MGP_AJ_T0002716.1 MGP_AJ_G0002588.1 mouse_genomes_project 14 45994910 45995463 + TR_V_pseudogene TR_V_pseudogene MGP_AJ_T0003545.1 MGP_AJ_G0003220.1 mouse_genomes_project 14 47093754 47151678 - Gm42877 antisense antisense MGP_AJ_T0003546.1 MGP_AJ_G0003220.1 mouse_genomes_project 14 47131088 47151738 - Gm42877 antisense antisense MGP_AJ_T0040179.1 MGP_AJ_G0021556.1 mouse_genomes_project 14 72721520 72725574 + MGP_AJ_P0040179 Kbtbd6 protein_coding protein_coding MGP_AJ_T0002524.1 MGP_AJ_G0002426.1 mouse_genomes_project 14 47200252 47200315 + MGP_AJ_P0002524 Traj39 TR_J_gene TR_J_gene MGP_AJ_T0039688.1 MGP_AJ_G0021373.1 mouse_genomes_project 14 50976960 50996406 - MGP_AJ_P0039688 Ska3 protein_coding protein_coding MGP_AJ_T0002516.1 MGP_AJ_G0002418.1 mouse_genomes_project 14 47192149 47192206 + MGP_AJ_P0002516 Traj47 TR_J_gene TR_J_gene MGP_AJ_T0040219.1 MGP_AJ_G0021572.1 mouse_genomes_project 14 92267069 92279102 - MGP_AJ_P0040219 Mzt1 protein_coding protein_coding MGP_AJ_T0039202.1 MGP_AJ_G0021238.1 mouse_genomes_project 14 44712443 44719469 + MGP_AJ_P0039202 Mettl17 protein_coding protein_coding MGP_AJ_T0039203.1 MGP_AJ_G0021238.1 mouse_genomes_project 14 44712477 44719461 + Mettl17 protein_coding retained_intron MGP_AJ_T0039204.1 MGP_AJ_G0021238.1 mouse_genomes_project 14 44712479 44717190 + MGP_AJ_P0039204 Mettl17 protein_coding nonsense_mediated_decay MGP_AJ_T0039205.1 MGP_AJ_G0021238.1 mouse_genomes_project 14 44712490 44719394 + Mettl17 protein_coding retained_intron MGP_AJ_T0039206.1 MGP_AJ_G0021238.1 mouse_genomes_project 14 44712490 44719394 + MGP_AJ_P0039206 Mettl17 protein_coding nonsense_mediated_decay MGP_AJ_T0039207.1 MGP_AJ_G0021238.1 mouse_genomes_project 14 44712490 44719394 + MGP_AJ_P0039207 Mettl17 protein_coding nonsense_mediated_decay MGP_AJ_T0039208.1 MGP_AJ_G0021238.1 mouse_genomes_project 14 44712513 44716908 + Mettl17 protein_coding retained_intron MGP_AJ_T0039209.1 MGP_AJ_G0021238.1 mouse_genomes_project 14 44712519 44713260 + Mettl17 protein_coding retained_intron MGP_AJ_T0039210.1 MGP_AJ_G0021238.1 mouse_genomes_project 14 44712536 44720473 + Mettl17 protein_coding retained_intron MGP_AJ_T0039211.1 MGP_AJ_G0021238.1 mouse_genomes_project 14 44712539 44716504 + Mettl17 protein_coding retained_intron MGP_AJ_T0039212.1 MGP_AJ_G0021238.1 mouse_genomes_project 14 44712547 44719336 + MGP_AJ_P0039212 Mettl17 protein_coding protein_coding MGP_AJ_T0039213.1 MGP_AJ_G0021238.1 mouse_genomes_project 14 44712547 44716504 + MGP_AJ_P0039213 Mettl17 protein_coding protein_coding MGP_AJ_T0039214.1 MGP_AJ_G0021238.1 mouse_genomes_project 14 44712553 44714855 + Mettl17 protein_coding retained_intron MGP_AJ_T0039215.1 MGP_AJ_G0021238.1 mouse_genomes_project 14 44712555 44713264 + Mettl17 protein_coding retained_intron MGP_AJ_T0039216.1 MGP_AJ_G0021238.1 mouse_genomes_project 14 44713003 44718328 + MGP_AJ_P0039216 Mettl17 protein_coding protein_coding MGP_AJ_T0039217.1 MGP_AJ_G0021238.1 mouse_genomes_project 14 44714761 44716619 + Mettl17 protein_coding retained_intron MGP_AJ_T0002661.1 MGP_AJ_G0002543.1 mouse_genomes_project 14 46978197 46978847 + MGP_AJ_P0002661 Trdv2-2 TR_V_gene TR_V_gene MGP_AJ_T0039318.1 MGP_AJ_G0021254.1 mouse_genomes_project 14 45128017 45133172 - Sall2 protein_coding processed_transcript MGP_AJ_T0039319.1 MGP_AJ_G0021254.1 mouse_genomes_project 14 45128017 45145461 - MGP_AJ_P0039319 Sall2 protein_coding protein_coding MGP_AJ_T0038420.1 MGP_AJ_G0021000.1 mouse_genomes_project 14 13510537 13903855 + MGP_AJ_P0038420 Adk protein_coding protein_coding MGP_AJ_T0038421.1 MGP_AJ_G0021000.1 mouse_genomes_project 14 13534217 13903225 + MGP_AJ_P0038421 Adk protein_coding unknown_likely_coding MGP_AJ_T0002537.1 MGP_AJ_G0002439.1 mouse_genomes_project 14 47215033 47215090 + MGP_AJ_P0002537 Traj25 TR_J_gene TR_J_gene MGP_AJ_T0040367.1 MGP_AJ_G0021632.1 mouse_genomes_project 14 115714453 115718873 + MGP_AJ_P0040367 Zic2 protein_coding protein_coding MGP_AJ_T0040368.1 MGP_AJ_G0021632.1 mouse_genomes_project 14 115717120 115718071 + Zic2 protein_coding retained_intron MGP_AJ_T0002645.1 MGP_AJ_G0002533.1 mouse_genomes_project 14 46609202 46609793 + MGP_AJ_P0002645 TR_V_gene TR_V_gene MGP_AJ_T0006736.1 MGP_AJ_G0005558.1 mouse_genomes_project 14 108245742 108249591 + Mir17hg lincRNA lincRNA MGP_AJ_T0013022.1 MGP_AJ_G0011117.1 mouse_genomes_project 14 50597985 50598778 - processed_pseudogene processed_pseudogene MGP_AJ_T0039630.1 MGP_AJ_G0021351.1 mouse_genomes_project 14 49447983 49471744 + MGP_AJ_P0039630 Atp12a protein_coding protein_coding MGP_AJ_T0038221.1 MGP_AJ_G0020932.1 mouse_genomes_project 14 114333 263679 + MGP_AJ_P0038221 Flnb protein_coding protein_coding MGP_AJ_T0038222.1 MGP_AJ_G0020932.1 mouse_genomes_project 14 114528 236919 + MGP_AJ_P0038222 Flnb protein_coding unknown_likely_coding MGP_AJ_T0101724.1 MGP_AJ_G0039664.1 mouse_genomes_project 14 40726244 40754793 + transcribed_processed_pseudogene processed_transcript MGP_AJ_T0101725.1 MGP_AJ_G0039664.1 mouse_genomes_project 14 40753626 40754586 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0100803.1 MGP_AJ_G0038769.1 mouse_genomes_project 14 95535539 95535671 - Gm22347 snoRNA snoRNA MGP_AJ_T0100775.1 MGP_AJ_G0038741.1 mouse_genomes_project 14 49925349 49925435 - Gm22498 snoRNA snoRNA MGP_AJ_T0040309.1 MGP_AJ_G0021604.1 mouse_genomes_project 14 110107053 111133634 + MGP_AJ_P0040309 Gpc6 protein_coding protein_coding MGP_AJ_T0040310.1 MGP_AJ_G0021604.1 mouse_genomes_project 14 110107071 110783503 + Gpc6 protein_coding retained_intron MGP_AJ_T0040311.1 MGP_AJ_G0021604.1 mouse_genomes_project 14 110107186 111130751 + MGP_AJ_P0040311 Gpc6 protein_coding protein_coding MGP_AJ_T0040312.1 MGP_AJ_G0021604.1 mouse_genomes_project 14 110107287 111129613 + MGP_AJ_P0040312 Gpc6 protein_coding protein_coding MGP_AJ_T0003514.1 MGP_AJ_G0003197.1 mouse_genomes_project 14 6287964 6321594 + Gm11100 antisense antisense MGP_AJ_T0003515.1 MGP_AJ_G0003197.1 mouse_genomes_project 14 6303592 6321594 + Gm11100 antisense antisense MGP_AJ_T0039494.1 MGP_AJ_G0021306.1 mouse_genomes_project 14 48586561 48596071 + MGP_AJ_P0039494 Pck2 protein_coding protein_coding MGP_AJ_T0039080.1 MGP_AJ_G0021174.1 mouse_genomes_project 14 40648105 40787029 + MGP_AJ_P0039080 Peli2 protein_coding protein_coding MGP_AJ_T0039819.1 MGP_AJ_G0021424.1 mouse_genomes_project 14 57071114 57130858 + MGP_AJ_P0039819 Pinx1 protein_coding protein_coding MGP_AJ_T0040344.1 MGP_AJ_G0021618.1 mouse_genomes_project 14 113675317 113705359 + MGP_AJ_P0040344 Rap2a protein_coding protein_coding MGP_AJ_T0040345.1 MGP_AJ_G0021618.1 mouse_genomes_project 14 113701765 113705359 + MGP_AJ_P0040345 Rap2a protein_coding protein_coding MGP_AJ_T0006681.1 MGP_AJ_G0005517.1 mouse_genomes_project 14 24169848 24191096 + D830044D21Rik lincRNA lincRNA MGP_AJ_T0010002.1 MGP_AJ_G0008124.1 mouse_genomes_project 14 62947310 62947383 + Mir6950 miRNA miRNA MGP_AJ_T0013032.1 MGP_AJ_G0011127.1 mouse_genomes_project 14 67981799 67995531 + processed_pseudogene processed_pseudogene MGP_AJ_T0099484.1 MGP_AJ_G0037450.1 mouse_genomes_project 14 14272977 14273122 + Gm23502 snRNA snRNA MGP_AJ_T0040225.1 MGP_AJ_G0021578.1 mouse_genomes_project 14 94418203 94420583 - MGP_AJ_P0040225 Prr30 protein_coding protein_coding MGP_AJ_T0040226.1 MGP_AJ_G0021578.1 mouse_genomes_project 14 94418211 94420844 - MGP_AJ_P0040226 Prr30 protein_coding protein_coding MGP_AJ_T0039636.1 MGP_AJ_G0021355.1 mouse_genomes_project 14 49753053 49782194 + MGP_AJ_P0039636 Mphosph8 protein_coding protein_coding MGP_AJ_T0039637.1 MGP_AJ_G0021355.1 mouse_genomes_project 14 49756995 49758741 + Mphosph8 protein_coding processed_transcript MGP_AJ_T0039638.1 MGP_AJ_G0021355.1 mouse_genomes_project 14 49773144 49776013 + Mphosph8 protein_coding processed_transcript MGP_AJ_T0039639.1 MGP_AJ_G0021355.1 mouse_genomes_project 14 49777901 49782191 + Mphosph8 protein_coding processed_transcript MGP_AJ_T0039640.1 MGP_AJ_G0021355.1 mouse_genomes_project 14 49778187 49782192 + Mphosph8 protein_coding processed_transcript MGP_AJ_T0039390.1 MGP_AJ_G0021280.1 mouse_genomes_project 14 47654674 47666180 - MGP_AJ_P0039390 Acin1 protein_coding protein_coding MGP_AJ_T0039391.1 MGP_AJ_G0021280.1 mouse_genomes_project 14 47654674 47666152 - MGP_AJ_P0039391 Acin1 protein_coding protein_coding MGP_AJ_T0039392.1 MGP_AJ_G0021280.1 mouse_genomes_project 14 47654674 47666101 - MGP_AJ_P0039392 Acin1 protein_coding protein_coding MGP_AJ_T0039393.1 MGP_AJ_G0021280.1 mouse_genomes_project 14 47654674 47700016 - MGP_AJ_P0039393 Acin1 protein_coding protein_coding MGP_AJ_T0039394.1 MGP_AJ_G0021280.1 mouse_genomes_project 14 47654675 47666186 - MGP_AJ_P0039394 Acin1 protein_coding protein_coding MGP_AJ_T0039395.1 MGP_AJ_G0021280.1 mouse_genomes_project 14 47654675 47699701 - MGP_AJ_P0039395 Acin1 protein_coding protein_coding MGP_AJ_T0039396.1 MGP_AJ_G0021280.1 mouse_genomes_project 14 47654680 47666167 - MGP_AJ_P0039396 Acin1 protein_coding protein_coding MGP_AJ_T0039397.1 MGP_AJ_G0021280.1 mouse_genomes_project 14 47655242 47665723 - MGP_AJ_P0039397 Acin1 protein_coding protein_coding MGP_AJ_T0039398.1 MGP_AJ_G0021280.1 mouse_genomes_project 14 47655242 47700016 - MGP_AJ_P0039398 Acin1 protein_coding protein_coding MGP_AJ_T0039399.1 MGP_AJ_G0021280.1 mouse_genomes_project 14 47655416 47657052 - Acin1 protein_coding retained_intron MGP_AJ_T0039400.1 MGP_AJ_G0021280.1 mouse_genomes_project 14 47655802 47656726 - MGP_AJ_P0039400 Acin1 protein_coding protein_coding MGP_AJ_T0039401.1 MGP_AJ_G0021280.1 mouse_genomes_project 14 47656770 47658369 - Acin1 protein_coding retained_intron MGP_AJ_T0039402.1 MGP_AJ_G0021280.1 mouse_genomes_project 14 47657242 47661054 - Acin1 protein_coding retained_intron MGP_AJ_T0039403.1 MGP_AJ_G0021280.1 mouse_genomes_project 14 47657502 47658550 - Acin1 protein_coding retained_intron MGP_AJ_T0039404.1 MGP_AJ_G0021280.1 mouse_genomes_project 14 47657716 47662742 - Acin1 protein_coding processed_transcript MGP_AJ_T0039405.1 MGP_AJ_G0021280.1 mouse_genomes_project 14 47657808 47660818 - Acin1 protein_coding retained_intron MGP_AJ_T0039406.1 MGP_AJ_G0021280.1 mouse_genomes_project 14 47658244 47666170 - MGP_AJ_P0039406 Acin1 protein_coding protein_coding MGP_AJ_T0039407.1 MGP_AJ_G0021280.1 mouse_genomes_project 14 47659058 47662376 - Acin1 protein_coding processed_transcript MGP_AJ_T0039408.1 MGP_AJ_G0021280.1 mouse_genomes_project 14 47663268 47666166 - Acin1 protein_coding processed_transcript MGP_AJ_T0039409.1 MGP_AJ_G0021280.1 mouse_genomes_project 14 47663321 47666166 - Acin1 protein_coding processed_transcript MGP_AJ_T0039410.1 MGP_AJ_G0021280.1 mouse_genomes_project 14 47663883 47676246 - Acin1 protein_coding retained_intron MGP_AJ_T0039411.1 MGP_AJ_G0021280.1 mouse_genomes_project 14 47663997 47666176 - Acin1 protein_coding retained_intron MGP_AJ_T0039412.1 MGP_AJ_G0021280.1 mouse_genomes_project 14 47674334 47677213 - Acin1 protein_coding retained_intron MGP_AJ_T0039413.1 MGP_AJ_G0021280.1 mouse_genomes_project 14 47677661 47699145 - MGP_AJ_P0039413 Acin1 protein_coding protein_coding MGP_AJ_T0039414.1 MGP_AJ_G0021280.1 mouse_genomes_project 14 47688105 47699718 - Acin1 protein_coding processed_transcript MGP_AJ_T0039415.1 MGP_AJ_G0021280.1 mouse_genomes_project 14 47691628 47699700 - Acin1 protein_coding retained_intron MGP_AJ_T0039600.1 MGP_AJ_G0021326.1 mouse_genomes_project 14 48799472 48809258 + MGP_AJ_P0039600 Nop9 protein_coding protein_coding MGP_AJ_T0040215.1 MGP_AJ_G0021570.1 mouse_genomes_project 14 89386116 89800326 - MGP_AJ_P0040215 Klhl1 protein_coding protein_coding MGP_AJ_T0038655.1 MGP_AJ_G0021056.1 mouse_genomes_project 14 23078188 23130263 + MGP_AJ_P0038655 Tmem110 protein_coding protein_coding MGP_AJ_T0038656.1 MGP_AJ_G0021056.1 mouse_genomes_project 14 23078192 23127847 + MGP_AJ_P0038656 Tmem110 protein_coding nonsense_mediated_decay MGP_AJ_T0038657.1 MGP_AJ_G0021056.1 mouse_genomes_project 14 23119717 23128241 + Tmem110 protein_coding processed_transcript MGP_AJ_T0038658.1 MGP_AJ_G0021056.1 mouse_genomes_project 14 23123783 23125829 + Tmem110 protein_coding retained_intron MGP_AJ_T0038659.1 MGP_AJ_G0021056.1 mouse_genomes_project 14 23125631 23128277 + Tmem110 protein_coding retained_intron MGP_AJ_T0038948.1 MGP_AJ_G0021137.1 mouse_genomes_project 14 29357785 29372481 - MGP_AJ_P0038948 Ghitm protein_coding protein_coding MGP_AJ_T0038949.1 MGP_AJ_G0021137.1 mouse_genomes_project 14 29357785 29372664 - MGP_AJ_P0038949 Ghitm protein_coding protein_coding MGP_AJ_T0039624.1 MGP_AJ_G0021345.1 mouse_genomes_project 14 49212084 49215132 - MGP_AJ_P0039624 Gzmd protein_coding protein_coding MGP_AJ_T0038839.1 MGP_AJ_G0021091.1 mouse_genomes_project 14 24588189 24614670 + MGP_AJ_P0038839 Ogdhl protein_coding unknown_likely_coding MGP_AJ_T0038840.1 MGP_AJ_G0021091.1 mouse_genomes_project 14 24588206 24614333 + MGP_AJ_P0038840 Ogdhl protein_coding protein_coding MGP_AJ_T0039585.1 MGP_AJ_G0021319.1 mouse_genomes_project 14 48707565 48710195 - MGP_AJ_P0039585 Mdp1 protein_coding protein_coding MGP_AJ_T0038292.1 MGP_AJ_G0020959.1 mouse_genomes_project 14 7057141 7155361 + MGP_AJ_P0038292 Slc4a7 protein_coding protein_coding MGP_AJ_T0038623.1 MGP_AJ_G0021052.1 mouse_genomes_project 14 22795765 22796543 + Tkt protein_coding processed_transcript MGP_AJ_T0038624.1 MGP_AJ_G0021052.1 mouse_genomes_project 14 22796537 22821840 + MGP_AJ_P0038624 Tkt protein_coding protein_coding MGP_AJ_T0038625.1 MGP_AJ_G0021052.1 mouse_genomes_project 14 22796587 22809729 + Tkt protein_coding retained_intron MGP_AJ_T0038626.1 MGP_AJ_G0021052.1 mouse_genomes_project 14 22796617 22807933 + MGP_AJ_P0038626 Tkt protein_coding nonsense_mediated_decay MGP_AJ_T0038627.1 MGP_AJ_G0021052.1 mouse_genomes_project 14 22816621 22817937 + Tkt protein_coding retained_intron MGP_AJ_T0099530.1 MGP_AJ_G0037496.1 mouse_genomes_project 14 115625009 115625116 - Gm25464 snRNA snRNA MGP_AJ_T0038661.1 MGP_AJ_G0021058.1 mouse_genomes_project 14 23139799 23155157 + MGP_AJ_P0038661 Itih4 protein_coding protein_coding MGP_AJ_T0038662.1 MGP_AJ_G0021058.1 mouse_genomes_project 14 23139825 23155020 + MGP_AJ_P0038662 Itih4 protein_coding protein_coding MGP_AJ_T0038663.1 MGP_AJ_G0021058.1 mouse_genomes_project 14 23139825 23155124 + MGP_AJ_P0038663 Itih4 protein_coding protein_coding MGP_AJ_T0038664.1 MGP_AJ_G0021058.1 mouse_genomes_project 14 23139844 23155022 + MGP_AJ_P0038664 Itih4 protein_coding protein_coding MGP_AJ_T0038665.1 MGP_AJ_G0021058.1 mouse_genomes_project 14 23152406 23155025 + Itih4 protein_coding retained_intron MGP_AJ_T0038853.1 MGP_AJ_G0021101.1 mouse_genomes_project 14 25232875 25465812 - MGP_AJ_P0038853 Wdfy4 protein_coding protein_coding MGP_AJ_T0038854.1 MGP_AJ_G0021101.1 mouse_genomes_project 14 25232898 25465812 - MGP_AJ_P0038854 Wdfy4 protein_coding protein_coding MGP_AJ_T0038861.1 MGP_AJ_G0021101.1 mouse_genomes_project 14 25287201 25438407 - MGP_AJ_P0038861 Wdfy4 protein_coding unknown_likely_coding MGP_AJ_T0038862.1 MGP_AJ_G0021101.1 mouse_genomes_project 14 25291453 25296507 - MGP_AJ_P0038862 Wdfy4 protein_coding protein_coding MGP_AJ_T0038863.1 MGP_AJ_G0021101.1 mouse_genomes_project 14 25438212 25466254 - MGP_AJ_P0038863 Wdfy4 protein_coding protein_coding MGP_AJ_T0039121.1 MGP_AJ_G0021186.1 mouse_genomes_project 14 42609685 42610919 - MGP_AJ_P0039121 protein_coding protein_coding MGP_AJ_T0039807.1 MGP_AJ_G0021421.1 mouse_genomes_project 14 56702200 56719196 - MGP_AJ_P0039807 Tdh protein_coding protein_coding MGP_AJ_T0039808.1 MGP_AJ_G0021421.1 mouse_genomes_project 14 56702505 56710446 - MGP_AJ_P0039808 Tdh protein_coding nonsense_mediated_decay MGP_AJ_T0039809.1 MGP_AJ_G0021421.1 mouse_genomes_project 14 56702560 56710446 - MGP_AJ_P0039809 Tdh protein_coding nonsense_mediated_decay MGP_AJ_T0039810.1 MGP_AJ_G0021421.1 mouse_genomes_project 14 56702560 56710446 - MGP_AJ_P0039810 Tdh protein_coding nonsense_mediated_decay MGP_AJ_T0039811.1 MGP_AJ_G0021421.1 mouse_genomes_project 14 56705618 56707254 - Tdh protein_coding retained_intron MGP_AJ_T0039812.1 MGP_AJ_G0021421.1 mouse_genomes_project 14 56714012 56718860 - Tdh protein_coding processed_transcript MGP_AJ_T0010020.1 MGP_AJ_G0008142.1 mouse_genomes_project 14 108247020 108247127 + Mir20a miRNA miRNA MGP_AJ_T0039323.1 MGP_AJ_G0021258.1 mouse_genomes_project 14 45231846 45232934 - MGP_AJ_P0039323 protein_coding protein_coding MGP_AJ_T0099522.1 MGP_AJ_G0037488.1 mouse_genomes_project 14 98484055 98484163 - Gm24207 snRNA snRNA MGP_AJ_T0038578.1 MGP_AJ_G0021033.1 mouse_genomes_project 14 18864049 18873978 - MGP_AJ_P0038578 Pde12 protein_coding protein_coding MGP_AJ_T0000903.1 MGP_AJ_G0000837.1 mouse_genomes_project 14 14393838 14414134 + TEC TEC MGP_AJ_T0009985.1 MGP_AJ_G0008107.1 mouse_genomes_project 14 47628784 47628886 - Mir686 miRNA miRNA MGP_AJ_T0038990.1 MGP_AJ_G0021155.1 mouse_genomes_project 14 37835869 37865784 - MGP_AJ_P0038990 Gnpnat1 protein_coding protein_coding MGP_AJ_T0039037.1 MGP_AJ_G0021168.1 mouse_genomes_project 14 39795465 39822354 + MGP_AJ_P0039037 Mapk1ip1l protein_coding protein_coding MGP_AJ_T0039038.1 MGP_AJ_G0021168.1 mouse_genomes_project 14 39805823 39822359 + MGP_AJ_P0039038 Mapk1ip1l protein_coding protein_coding MGP_AJ_T0039820.1 MGP_AJ_G0021425.1 mouse_genomes_project 14 57155775 57162832 + MGP_AJ_P0039820 Sox7 protein_coding protein_coding MGP_AJ_T0100802.1 MGP_AJ_G0038768.1 mouse_genomes_project 14 94507082 94507218 + Gm26173 snoRNA snoRNA MGP_AJ_T0038535.1 MGP_AJ_G0021023.1 mouse_genomes_project 14 18414108 18430679 + protein_coding processed_transcript MGP_AJ_T0038539.1 MGP_AJ_G0021023.1 mouse_genomes_project 14 18418299 18432085 + MGP_AJ_P0038539 protein_coding protein_coding MGP_AJ_T0038541.1 MGP_AJ_G0021023.1 mouse_genomes_project 14 18427552 18430960 + protein_coding retained_intron MGP_AJ_T0038542.1 MGP_AJ_G0021023.1 mouse_genomes_project 14 18430396 18430876 + protein_coding retained_intron MGP_AJ_T0010007.1 MGP_AJ_G0008129.1 mouse_genomes_project 14 71471293 71471399 - Mir1971 miRNA miRNA MGP_AJ_T0038988.1 MGP_AJ_G0021153.1 mouse_genomes_project 14 37794636 37814520 + MGP_AJ_P0038988 Psmc6 protein_coding protein_coding MGP_AJ_T0040240.1 MGP_AJ_G0021581.1 mouse_genomes_project 14 94880386 94923009 + MGP_AJ_P0040240 Uchl3 protein_coding protein_coding MGP_AJ_T0003549.1 MGP_AJ_G0003223.1 mouse_genomes_project 14 47988106 47989014 + Mhrt antisense antisense MGP_AJ_T0003550.1 MGP_AJ_G0003223.1 mouse_genomes_project 14 47988215 47993789 + Mhrt antisense antisense MGP_AJ_T0040224.1 MGP_AJ_G0021577.1 mouse_genomes_project 14 93118132 93395273 - MGP_AJ_P0040224 Klf12 protein_coding protein_coding MGP_AJ_T0040096.1 MGP_AJ_G0021522.1 mouse_genomes_project 14 68000477 68193134 - MGP_AJ_P0040096 Lrch1 protein_coding protein_coding MGP_AJ_T0040097.1 MGP_AJ_G0021522.1 mouse_genomes_project 14 68010277 68192917 - MGP_AJ_P0040097 Lrch1 protein_coding unknown_likely_coding MGP_AJ_T0003572.1 MGP_AJ_G0003241.1 mouse_genomes_project 14 62607103 62610466 - Gm27221 antisense antisense MGP_AJ_T0040081.1 MGP_AJ_G0021519.1 mouse_genomes_project 14 66812193 66816389 + Sucla2 protein_coding processed_transcript MGP_AJ_T0040082.1 MGP_AJ_G0021519.1 mouse_genomes_project 14 66812369 66855570 + MGP_AJ_P0040082 Sucla2 protein_coding protein_coding MGP_AJ_T0040083.1 MGP_AJ_G0021519.1 mouse_genomes_project 14 66827234 66827823 + Sucla2 protein_coding retained_intron MGP_AJ_T0040084.1 MGP_AJ_G0021519.1 mouse_genomes_project 14 66849922 66850452 + Sucla2 protein_coding retained_intron MGP_AJ_T0040085.1 MGP_AJ_G0021519.1 mouse_genomes_project 14 66854824 66855561 + Sucla2 protein_coding processed_transcript MGP_AJ_T0038974.1 MGP_AJ_G0021150.1 mouse_genomes_project 14 37588607 37681356 - MGP_AJ_P0038974 Txndc16 protein_coding protein_coding MGP_AJ_T0038975.1 MGP_AJ_G0021150.1 mouse_genomes_project 14 37589058 37681387 - MGP_AJ_P0038975 Txndc16 protein_coding protein_coding MGP_AJ_T0038976.1 MGP_AJ_G0021150.1 mouse_genomes_project 14 37589066 37682290 - MGP_AJ_P0038976 Txndc16 protein_coding protein_coding MGP_AJ_T0038977.1 MGP_AJ_G0021150.1 mouse_genomes_project 14 37619444 37623949 - Txndc16 protein_coding retained_intron MGP_AJ_T0038978.1 MGP_AJ_G0021150.1 mouse_genomes_project 14 37621978 37681352 - Txndc16 protein_coding retained_intron MGP_AJ_T0038979.1 MGP_AJ_G0021150.1 mouse_genomes_project 14 37622847 37681344 - Txndc16 protein_coding retained_intron MGP_AJ_T0038980.1 MGP_AJ_G0021150.1 mouse_genomes_project 14 37668043 37681359 - MGP_AJ_P0038980 Txndc16 protein_coding protein_coding MGP_AJ_T0038981.1 MGP_AJ_G0021150.1 mouse_genomes_project 14 37669322 37681364 - Txndc16 protein_coding retained_intron MGP_AJ_T0038982.1 MGP_AJ_G0021150.1 mouse_genomes_project 14 37675255 37681326 - Txndc16 protein_coding processed_transcript MGP_AJ_T0038983.1 MGP_AJ_G0021150.1 mouse_genomes_project 14 37679849 37681352 - Txndc16 protein_coding processed_transcript MGP_AJ_T0038325.1 MGP_AJ_G0020969.1 mouse_genomes_project 14 10566670 10579617 + MGP_AJ_P0038325 Nkiras1 protein_coding protein_coding MGP_AJ_T0038326.1 MGP_AJ_G0020969.1 mouse_genomes_project 14 10566720 10575183 + MGP_AJ_P0038326 Nkiras1 protein_coding protein_coding MGP_AJ_T0038327.1 MGP_AJ_G0020969.1 mouse_genomes_project 14 10566738 10572463 + Nkiras1 protein_coding retained_intron MGP_AJ_T0038328.1 MGP_AJ_G0020969.1 mouse_genomes_project 14 10566745 10573545 + Nkiras1 protein_coding processed_transcript MGP_AJ_T0038329.1 MGP_AJ_G0020969.1 mouse_genomes_project 14 10566761 10575578 + MGP_AJ_P0038329 Nkiras1 protein_coding nonsense_mediated_decay MGP_AJ_T0038330.1 MGP_AJ_G0020969.1 mouse_genomes_project 14 10566772 10572218 + Nkiras1 protein_coding retained_intron MGP_AJ_T0038331.1 MGP_AJ_G0020969.1 mouse_genomes_project 14 10566798 10573686 + Nkiras1 protein_coding processed_transcript MGP_AJ_T0039865.1 MGP_AJ_G0021447.1 mouse_genomes_project 14 59192550 59205610 + MGP_AJ_P0039865 Clu protein_coding protein_coding MGP_AJ_T0039866.1 MGP_AJ_G0021447.1 mouse_genomes_project 14 59192709 59199707 + MGP_AJ_P0039866 Clu protein_coding nonsense_mediated_decay MGP_AJ_T0039867.1 MGP_AJ_G0021447.1 mouse_genomes_project 14 59192721 59196596 + Clu protein_coding retained_intron MGP_AJ_T0039868.1 MGP_AJ_G0021447.1 mouse_genomes_project 14 59193785 59200022 + MGP_AJ_P0039868 Clu protein_coding protein_coding MGP_AJ_T0039869.1 MGP_AJ_G0021447.1 mouse_genomes_project 14 59194687 59199926 + MGP_AJ_P0039869 Clu protein_coding protein_coding MGP_AJ_T0039870.1 MGP_AJ_G0021447.1 mouse_genomes_project 14 59194863 59199903 + MGP_AJ_P0039870 Clu protein_coding protein_coding MGP_AJ_T0039871.1 MGP_AJ_G0021447.1 mouse_genomes_project 14 59195115 59199838 + MGP_AJ_P0039871 Clu protein_coding protein_coding MGP_AJ_T0039872.1 MGP_AJ_G0021447.1 mouse_genomes_project 14 59195360 59199023 + MGP_AJ_P0039872 Clu protein_coding protein_coding MGP_AJ_T0039873.1 MGP_AJ_G0021447.1 mouse_genomes_project 14 59198729 59200035 + Clu protein_coding retained_intron MGP_AJ_T0099529.1 MGP_AJ_G0037495.1 mouse_genomes_project 14 113994600 113994684 + Gm25781 snRNA snRNA MGP_AJ_T0039302.1 MGP_AJ_G0021253.1 mouse_genomes_project 14 45111089 45121372 - MGP_AJ_P0039302 Mettl3 protein_coding nonsense_mediated_decay MGP_AJ_T0039303.1 MGP_AJ_G0021253.1 mouse_genomes_project 14 45111262 45121417 - MGP_AJ_P0039303 Mettl3 protein_coding protein_coding MGP_AJ_T0039304.1 MGP_AJ_G0021253.1 mouse_genomes_project 14 45111270 45116758 - MGP_AJ_P0039304 Mettl3 protein_coding nonsense_mediated_decay MGP_AJ_T0039305.1 MGP_AJ_G0021253.1 mouse_genomes_project 14 45111278 45113083 - Mettl3 protein_coding retained_intron MGP_AJ_T0039306.1 MGP_AJ_G0021253.1 mouse_genomes_project 14 45111278 45113166 - MGP_AJ_P0039306 Mettl3 protein_coding protein_coding MGP_AJ_T0039307.1 MGP_AJ_G0021253.1 mouse_genomes_project 14 45111278 45113165 - MGP_AJ_P0039307 Mettl3 protein_coding protein_coding MGP_AJ_T0039308.1 MGP_AJ_G0021253.1 mouse_genomes_project 14 45111924 45121413 - MGP_AJ_P0039308 Mettl3 protein_coding nonsense_mediated_decay MGP_AJ_T0039309.1 MGP_AJ_G0021253.1 mouse_genomes_project 14 45112124 45113176 - Mettl3 protein_coding retained_intron MGP_AJ_T0039310.1 MGP_AJ_G0021253.1 mouse_genomes_project 14 45113074 45114871 - Mettl3 protein_coding retained_intron MGP_AJ_T0039311.1 MGP_AJ_G0021253.1 mouse_genomes_project 14 45113404 45116186 - Mettl3 protein_coding retained_intron MGP_AJ_T0039312.1 MGP_AJ_G0021253.1 mouse_genomes_project 14 45113619 45121375 - MGP_AJ_P0039312 Mettl3 protein_coding nonsense_mediated_decay MGP_AJ_T0039313.1 MGP_AJ_G0021253.1 mouse_genomes_project 14 45113884 45121276 - MGP_AJ_P0039313 Mettl3 protein_coding nonsense_mediated_decay MGP_AJ_T0039314.1 MGP_AJ_G0021253.1 mouse_genomes_project 14 45114439 45121276 - MGP_AJ_P0039314 Mettl3 protein_coding nonsense_mediated_decay MGP_AJ_T0039315.1 MGP_AJ_G0021253.1 mouse_genomes_project 14 45114449 45121396 - MGP_AJ_P0039315 Mettl3 protein_coding protein_coding MGP_AJ_T0039316.1 MGP_AJ_G0021253.1 mouse_genomes_project 14 45116765 45121388 - MGP_AJ_P0039316 Mettl3 protein_coding nonsense_mediated_decay MGP_AJ_T0039317.1 MGP_AJ_G0021253.1 mouse_genomes_project 14 45119909 45121413 - Mettl3 protein_coding retained_intron MGP_AJ_T0039150.1 MGP_AJ_G0021210.1 mouse_genomes_project 14 43376683 43397347 - MGP_AJ_P0039150 Ttc5 protein_coding protein_coding MGP_AJ_T0099509.1 MGP_AJ_G0037475.1 mouse_genomes_project 14 79594711 79594801 - Gm23926 snRNA snRNA MGP_AJ_T0013026.1 MGP_AJ_G0011121.1 mouse_genomes_project 14 53324689 53324894 + processed_pseudogene processed_pseudogene MGP_AJ_T0099501.1 MGP_AJ_G0037467.1 mouse_genomes_project 14 49942645 49942704 - Gm27635 snRNA snRNA MGP_AJ_T0006663.1 MGP_AJ_G0005506.1 mouse_genomes_project 14 13143612 13159321 - 6230400D17Rik lincRNA lincRNA MGP_AJ_T0003530.1 MGP_AJ_G0003205.1 mouse_genomes_project 14 18331840 18346394 - Anxa11os antisense antisense MGP_AJ_T0012971.1 MGP_AJ_G0011066.1 mouse_genomes_project 14 97425 98248 + processed_pseudogene processed_pseudogene MGP_AJ_T0036639.1 MGP_AJ_G0020397.1 mouse_genomes_project 13 31041666 31067106 - MGP_AJ_P0036639 Serpinb6c protein_coding protein_coding MGP_AJ_T0036640.1 MGP_AJ_G0020397.1 mouse_genomes_project 13 31041667 31067644 - MGP_AJ_P0036640 Serpinb6c protein_coding protein_coding MGP_AJ_T0036992.1 MGP_AJ_G0020520.1 mouse_genomes_project 13 51618823 51652967 + MGP_AJ_P0036992 Hrh2 protein_coding protein_coding MGP_AJ_T0036903.1 MGP_AJ_G0020489.1 mouse_genomes_project 13 46675092 46716198 + MGP_AJ_P0036903 Ippk protein_coding protein_coding MGP_AJ_T0037394.1 MGP_AJ_G0020648.1 mouse_genomes_project 13 64566621 64567013 + MGP_AJ_P0037394 protein_coding protein_coding MGP_AJ_T0002499.1 MGP_AJ_G0002405.1 mouse_genomes_project 13 16160864 16160924 + MGP_AJ_P0002499 Trgj2 TR_J_gene TR_J_gene MGP_AJ_T0037505.1 MGP_AJ_G0020703.1 mouse_genomes_project 13 71424422 71441060 + MGP_AJ_P0037505 Clptm1l protein_coding protein_coding MGP_AJ_T0006648.1 MGP_AJ_G0005497.1 mouse_genomes_project 13 109825713 109829709 + Gm15326 lincRNA lincRNA MGP_AJ_T0006649.1 MGP_AJ_G0005497.1 mouse_genomes_project 13 109828905 109832521 + Gm15326 lincRNA lincRNA MGP_AJ_T0017341.1 MGP_AJ_G0015220.1 mouse_genomes_project 13 18295345 18301380 + 4930470G03Rik processed_transcript processed_transcript MGP_AJ_T0006565.1 MGP_AJ_G0005440.1 mouse_genomes_project 13 41296366 41300351 + Gm5083 lincRNA lincRNA MGP_AJ_T0006566.1 MGP_AJ_G0005440.1 mouse_genomes_project 13 41296493 41300351 + Gm5083 lincRNA lincRNA MGP_AJ_T0037111.1 MGP_AJ_G0020544.1 mouse_genomes_project 13 52770554 52773771 + MGP_AJ_P0037111 Prelid1 protein_coding protein_coding MGP_AJ_T0036248.1 MGP_AJ_G0020195.1 mouse_genomes_project 13 10684346 10706447 + Gng4 protein_coding processed_transcript MGP_AJ_T0036249.1 MGP_AJ_G0020195.1 mouse_genomes_project 13 10684616 10730112 + MGP_AJ_P0036249 Gng4 protein_coding protein_coding MGP_AJ_T0036885.1 MGP_AJ_G0020484.1 mouse_genomes_project 13 46440116 46448876 + MGP_AJ_P0036885 Ninj1 protein_coding protein_coding MGP_AJ_T0036886.1 MGP_AJ_G0020484.1 mouse_genomes_project 13 46440156 46448876 + MGP_AJ_P0036886 Ninj1 protein_coding protein_coding MGP_AJ_T0036887.1 MGP_AJ_G0020484.1 mouse_genomes_project 13 46440167 46448391 + MGP_AJ_P0036887 Ninj1 protein_coding nonsense_mediated_decay MGP_AJ_T0036888.1 MGP_AJ_G0020484.1 mouse_genomes_project 13 46440398 46447556 + Ninj1 protein_coding processed_transcript MGP_AJ_T0036889.1 MGP_AJ_G0020484.1 mouse_genomes_project 13 46442927 46448876 + Ninj1 protein_coding processed_transcript MGP_AJ_T0012942.1 MGP_AJ_G0011037.1 mouse_genomes_project 13 67557792 67558081 + processed_pseudogene processed_pseudogene MGP_AJ_T0037571.1 MGP_AJ_G0020733.1 mouse_genomes_project 13 73997529 74033616 - MGP_AJ_P0037571 Arsk protein_coding protein_coding MGP_AJ_T0037572.1 MGP_AJ_G0020733.1 mouse_genomes_project 13 74009787 74033628 - Arsk protein_coding retained_intron MGP_AJ_T0102294.1 MGP_AJ_G0040036.1 mouse_genomes_project 13 19631371 19632368 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0100725.1 MGP_AJ_G0038691.1 mouse_genomes_project 13 42012861 42012980 - Gm22213 snoRNA snoRNA MGP_AJ_T0009911.1 MGP_AJ_G0008033.1 mouse_genomes_project 13 2596209 2596306 - Gm26259 miRNA miRNA MGP_AJ_T0036986.1 MGP_AJ_G0020515.1 mouse_genomes_project 13 50761369 50806233 - MGP_AJ_P0036986 Sptlc1 protein_coding protein_coding MGP_AJ_T0099451.1 MGP_AJ_G0037417.1 mouse_genomes_project 13 28870103 28870211 - Gm25186 snRNA snRNA MGP_AJ_T0036447.1 MGP_AJ_G0020304.1 mouse_genomes_project 13 20594571 20595856 + MGP_AJ_P0036447 Hist1h1d protein_coding protein_coding MGP_AJ_T0036859.1 MGP_AJ_G0020475.1 mouse_genomes_project 13 44330067 44458749 + MGP_AJ_P0036859 Rnf144b protein_coding protein_coding MGP_AJ_T0036860.1 MGP_AJ_G0020475.1 mouse_genomes_project 13 44403779 44458749 + MGP_AJ_P0036860 Rnf144b protein_coding protein_coding MGP_AJ_T0037479.1 MGP_AJ_G0020691.1 mouse_genomes_project 13 67597654 67603835 + MGP_AJ_P0037479 Med10 protein_coding protein_coding MGP_AJ_T0003433.1 MGP_AJ_G0003147.1 mouse_genomes_project 13 19631700 19632510 + antisense antisense MGP_AJ_T0036767.1 MGP_AJ_G0020445.1 mouse_genomes_project 13 38820550 38821378 + MGP_AJ_P0036767 Gm5082 protein_coding protein_coding MGP_AJ_T0037367.1 MGP_AJ_G0020630.1 mouse_genomes_project 13 61884569 61967253 - MGP_AJ_P0037367 Cdc14b protein_coding protein_coding MGP_AJ_T0037368.1 MGP_AJ_G0020630.1 mouse_genomes_project 13 61884569 61941122 - MGP_AJ_P0037368 Cdc14b protein_coding protein_coding MGP_AJ_T0037369.1 MGP_AJ_G0020630.1 mouse_genomes_project 13 61887362 61967159 - MGP_AJ_P0037369 Cdc14b protein_coding protein_coding MGP_AJ_T0037370.1 MGP_AJ_G0020630.1 mouse_genomes_project 13 61888640 61941053 - MGP_AJ_P0037370 Cdc14b protein_coding unknown_likely_coding MGP_AJ_T0101721.1 MGP_AJ_G0039662.1 mouse_genomes_project 13 31194122 31198206 + transcribed_processed_pseudogene processed_transcript MGP_AJ_T0101722.1 MGP_AJ_G0039662.1 mouse_genomes_project 13 31195539 31196096 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0036703.1 MGP_AJ_G0020416.1 mouse_genomes_project 13 33371360 33709820 + MGP_AJ_P0036703 Fars2 protein_coding protein_coding MGP_AJ_T0012912.1 MGP_AJ_G0011007.1 mouse_genomes_project 13 24393382 24394336 + processed_pseudogene processed_pseudogene MGP_AJ_T0100729.1 MGP_AJ_G0038695.1 mouse_genomes_project 13 46955331 46955464 + Gm25394 snoRNA snoRNA MGP_AJ_T0038104.1 MGP_AJ_G0020881.1 mouse_genomes_project 13 109212680 109215417 + MGP_AJ_P0038104 Actbl2 protein_coding protein_coding MGP_AJ_T0102326.1 MGP_AJ_G0040068.1 mouse_genomes_project 13 30983220 30984144 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0006563.1 MGP_AJ_G0005438.1 mouse_genomes_project 13 38520811 38532277 + Gm26877 lincRNA lincRNA MGP_AJ_T0006627.1 MGP_AJ_G0005481.1 mouse_genomes_project 13 95303057 95364839 + Lncenc1 lincRNA lincRNA MGP_AJ_T0006628.1 MGP_AJ_G0005481.1 mouse_genomes_project 13 95350620 95364839 + Lncenc1 lincRNA lincRNA MGP_AJ_T0006629.1 MGP_AJ_G0005481.1 mouse_genomes_project 13 95350870 95357619 + Lncenc1 lincRNA lincRNA MGP_AJ_T0036937.1 MGP_AJ_G0020502.1 mouse_genomes_project 13 48585047 48589210 + MGP_AJ_P0036937 Nxnl2 protein_coding protein_coding MGP_AJ_T0036147.1 MGP_AJ_G0020170.1 mouse_genomes_project 13 3147621 3183389 + MGP_AJ_P0036147 Pitrm1 protein_coding protein_coding MGP_AJ_T0036148.1 MGP_AJ_G0020170.1 mouse_genomes_project 13 3147638 3182993 + MGP_AJ_P0036148 Pitrm1 protein_coding unknown_likely_coding MGP_AJ_T0036620.1 MGP_AJ_G0020384.1 mouse_genomes_project 13 30046797 30059990 - MGP_AJ_P0036620 Serpinb1c protein_coding protein_coding MGP_AJ_T0036621.1 MGP_AJ_G0020384.1 mouse_genomes_project 13 30048971 30059967 - MGP_AJ_P0036621 Serpinb1c protein_coding protein_coding MGP_AJ_T0037698.1 MGP_AJ_G0020756.1 mouse_genomes_project 13 87902920 87923257 + MGP_AJ_P0037698 Tmem167 protein_coding protein_coding MGP_AJ_T0037699.1 MGP_AJ_G0020756.1 mouse_genomes_project 13 87903531 87958574 + MGP_AJ_P0037699 Tmem167 protein_coding nonsense_mediated_decay MGP_AJ_T0037700.1 MGP_AJ_G0020756.1 mouse_genomes_project 13 87903559 87918722 + MGP_AJ_P0037700 Tmem167 protein_coding protein_coding MGP_AJ_T0012923.1 MGP_AJ_G0011018.1 mouse_genomes_project 13 30725110 30725457 - processed_pseudogene processed_pseudogene MGP_AJ_T0036408.1 MGP_AJ_G0020271.1 mouse_genomes_project 13 19098585 19099488 - MGP_AJ_P0036408 Vmn1r192 protein_coding protein_coding MGP_AJ_T0002589.1 MGP_AJ_G0002487.1 mouse_genomes_project 13 16251350 16253829 - MGP_AJ_P0002589 Trgv2 TR_V_gene TR_V_gene MGP_AJ_T0036841.1 MGP_AJ_G0020472.1 mouse_genomes_project 13 44231346 44249326 - MGP_AJ_P0036841 Tpmt protein_coding protein_coding MGP_AJ_T0036842.1 MGP_AJ_G0020472.1 mouse_genomes_project 13 44231355 44249240 - MGP_AJ_P0036842 Tpmt protein_coding protein_coding MGP_AJ_T0036843.1 MGP_AJ_G0020472.1 mouse_genomes_project 13 44231544 44250780 - MGP_AJ_P0036843 Tpmt protein_coding nonsense_mediated_decay MGP_AJ_T0036844.1 MGP_AJ_G0020472.1 mouse_genomes_project 13 44234857 44249459 - MGP_AJ_P0036844 Tpmt protein_coding protein_coding MGP_AJ_T0036845.1 MGP_AJ_G0020472.1 mouse_genomes_project 13 44234876 44250853 - MGP_AJ_P0036845 Tpmt protein_coding protein_coding MGP_AJ_T0036846.1 MGP_AJ_G0020472.1 mouse_genomes_project 13 44245761 44249260 - Tpmt protein_coding retained_intron MGP_AJ_T0036847.1 MGP_AJ_G0020472.1 mouse_genomes_project 13 44246171 44249254 - MGP_AJ_P0036847 Tpmt protein_coding protein_coding MGP_AJ_T0036602.1 MGP_AJ_G0020373.1 mouse_genomes_project 13 28091624 28092811 - MGP_AJ_P0036602 Hus1b protein_coding protein_coding MGP_AJ_T0100731.1 MGP_AJ_G0038697.1 mouse_genomes_project 13 49067427 49067563 + Gm22806 snoRNA snoRNA MGP_AJ_T0037824.1 MGP_AJ_G0020800.1 mouse_genomes_project 13 93797291 93974190 - MGP_AJ_P0037824 Sv2c protein_coding protein_coding MGP_AJ_T0037825.1 MGP_AJ_G0020800.1 mouse_genomes_project 13 93803738 93828240 - Sv2c protein_coding processed_transcript MGP_AJ_T0037826.1 MGP_AJ_G0020800.1 mouse_genomes_project 13 93819229 93930443 - MGP_AJ_P0037826 Sv2c protein_coding protein_coding MGP_AJ_T0036706.1 MGP_AJ_G0020418.1 mouse_genomes_project 13 34047686 34223517 - MGP_AJ_P0036706 F13a1 protein_coding protein_coding MGP_AJ_T0036707.1 MGP_AJ_G0020418.1 mouse_genomes_project 13 34047686 34224518 - MGP_AJ_P0036707 F13a1 protein_coding protein_coding MGP_AJ_T0102299.1 MGP_AJ_G0040041.1 mouse_genomes_project 13 19918100 19918975 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0037378.1 MGP_AJ_G0020638.1 mouse_genomes_project 13 62687330 62695488 - MGP_AJ_P0037378 Prss47 protein_coding protein_coding MGP_AJ_T0037379.1 MGP_AJ_G0020638.1 mouse_genomes_project 13 62687641 62694575 - MGP_AJ_P0037379 Prss47 protein_coding protein_coding MGP_AJ_T0009925.1 MGP_AJ_G0008047.1 mouse_genomes_project 13 25882171 25882264 - Mir6368 miRNA miRNA MGP_AJ_T0099478.1 MGP_AJ_G0037444.1 mouse_genomes_project 13 117889085 117889192 + Gm23308 snRNA snRNA MGP_AJ_T0017365.1 MGP_AJ_G0015235.1 mouse_genomes_project 13 106269249 106272587 - Gm2822 processed_transcript processed_transcript MGP_AJ_T0006540.1 MGP_AJ_G0005421.1 mouse_genomes_project 13 28349726 28357140 - 4930401O12Rik lincRNA lincRNA MGP_AJ_T0003461.1 MGP_AJ_G0003168.1 mouse_genomes_project 13 60991401 60998406 + Gm16133 antisense antisense MGP_AJ_T0003462.1 MGP_AJ_G0003168.1 mouse_genomes_project 13 60991474 60998403 + Gm16133 antisense antisense MGP_AJ_T0038009.1 MGP_AJ_G0020853.1 mouse_genomes_project 13 101976283 102062467 - MGP_AJ_P0038009 Nln protein_coding protein_coding MGP_AJ_T0036862.1 MGP_AJ_G0020477.1 mouse_genomes_project 13 45730485 45756369 - MGP_AJ_P0036862 Zfp169 protein_coding protein_coding MGP_AJ_T0036863.1 MGP_AJ_G0020477.1 mouse_genomes_project 13 45730497 45756327 - MGP_AJ_P0036863 Zfp169 protein_coding protein_coding MGP_AJ_T0036864.1 MGP_AJ_G0020477.1 mouse_genomes_project 13 45732040 45749964 - MGP_AJ_P0036864 Zfp169 protein_coding protein_coding MGP_AJ_T0036865.1 MGP_AJ_G0020477.1 mouse_genomes_project 13 45732292 45749964 - MGP_AJ_P0036865 Zfp169 protein_coding protein_coding MGP_AJ_T0036866.1 MGP_AJ_G0020477.1 mouse_genomes_project 13 45734090 45756343 - MGP_AJ_P0036866 Zfp169 protein_coding protein_coding MGP_AJ_T0036867.1 MGP_AJ_G0020477.1 mouse_genomes_project 13 45734168 45756359 - MGP_AJ_P0036867 Zfp169 protein_coding protein_coding MGP_AJ_T0036868.1 MGP_AJ_G0020477.1 mouse_genomes_project 13 45737526 45756384 - Zfp169 protein_coding retained_intron MGP_AJ_T0037307.1 MGP_AJ_G0020611.1 mouse_genomes_project 13 58488929 58494553 - MGP_AJ_P0037307 Ctsj protein_coding protein_coding MGP_AJ_T0000873.1 MGP_AJ_G0000808.1 mouse_genomes_project 13 34676066 34676407 - TEC TEC MGP_AJ_T0037424.1 MGP_AJ_G0020662.1 mouse_genomes_project 13 65073632 65085702 - MGP_AJ_P0037424 protein_coding protein_coding MGP_AJ_T0037427.1 MGP_AJ_G0020662.1 mouse_genomes_project 13 65082739 65085702 - MGP_AJ_P0037427 protein_coding protein_coding MGP_AJ_T0037739.1 MGP_AJ_G0020767.1 mouse_genomes_project 13 90142820 90144024 + MGP_AJ_P0037739 Gm20379 protein_coding protein_coding MGP_AJ_T0099450.1 MGP_AJ_G0037416.1 mouse_genomes_project 13 27292932 27293116 - Gm23206 snRNA snRNA MGP_AJ_T0037702.1 MGP_AJ_G0020758.1 mouse_genomes_project 13 88708890 88725856 - MGP_AJ_P0037702 Atp6ap1l protein_coding protein_coding MGP_AJ_T0037703.1 MGP_AJ_G0020758.1 mouse_genomes_project 13 88708896 88732235 - MGP_AJ_P0037703 Atp6ap1l protein_coding nonsense_mediated_decay MGP_AJ_T0037704.1 MGP_AJ_G0020758.1 mouse_genomes_project 13 88708896 88732283 - MGP_AJ_P0037704 Atp6ap1l protein_coding protein_coding MGP_AJ_T0037705.1 MGP_AJ_G0020758.1 mouse_genomes_project 13 88709008 88732246 - MGP_AJ_P0037705 Atp6ap1l protein_coding protein_coding MGP_AJ_T0037706.1 MGP_AJ_G0020758.1 mouse_genomes_project 13 88724828 88732263 - Atp6ap1l protein_coding processed_transcript MGP_AJ_T0038012.1 MGP_AJ_G0020855.1 mouse_genomes_project 13 102097215 102133623 - MGP_AJ_P0038012 Trappc13 protein_coding protein_coding MGP_AJ_T0038013.1 MGP_AJ_G0020855.1 mouse_genomes_project 13 102097222 102133579 - MGP_AJ_P0038013 Trappc13 protein_coding protein_coding MGP_AJ_T0038014.1 MGP_AJ_G0020855.1 mouse_genomes_project 13 102099193 102133577 - MGP_AJ_P0038014 Trappc13 protein_coding protein_coding MGP_AJ_T0038015.1 MGP_AJ_G0020855.1 mouse_genomes_project 13 102099830 102133561 - MGP_AJ_P0038015 Trappc13 protein_coding protein_coding MGP_AJ_T0038016.1 MGP_AJ_G0020855.1 mouse_genomes_project 13 102122193 102133613 - Trappc13 protein_coding retained_intron MGP_AJ_T0038017.1 MGP_AJ_G0020855.1 mouse_genomes_project 13 102129027 102133593 - Trappc13 protein_coding processed_transcript MGP_AJ_T0100747.1 MGP_AJ_G0038713.1 mouse_genomes_project 13 89578550 89578678 + Gm22778 snoRNA snoRNA MGP_AJ_T0037890.1 MGP_AJ_G0020822.1 mouse_genomes_project 13 96539518 96541957 - MGP_AJ_P0037890 Tmem174 protein_coding protein_coding MGP_AJ_T0036793.1 MGP_AJ_G0020452.1 mouse_genomes_project 13 40541742 40560034 + MGP_AJ_P0036793 Sirt5 protein_coding protein_coding MGP_AJ_T0000880.1 MGP_AJ_G0000814.1 mouse_genomes_project 13 49445068 49447222 - TEC TEC MGP_AJ_T0009966.1 MGP_AJ_G0008088.1 mouse_genomes_project 13 111018165 111018256 + Mir449a miRNA miRNA MGP_AJ_T0100718.1 MGP_AJ_G0038684.1 mouse_genomes_project 13 19842451 19842582 - Gm23774 snoRNA snoRNA MGP_AJ_T0036144.1 MGP_AJ_G0020167.1 mouse_genomes_project 13 1360875 1424123 + MGP_AJ_P0036144 Gm5444 protein_coding protein_coding MGP_AJ_T0036682.1 MGP_AJ_G0020410.1 mouse_genomes_project 13 32088607 32118441 - MGP_AJ_P0036682 Eci3 protein_coding protein_coding MGP_AJ_T0036683.1 MGP_AJ_G0020410.1 mouse_genomes_project 13 32090077 32118419 - MGP_AJ_P0036683 Eci3 protein_coding protein_coding MGP_AJ_T0012882.1 MGP_AJ_G0010977.1 mouse_genomes_project 13 17579718 17580718 - processed_pseudogene processed_pseudogene MGP_AJ_T0036704.1 MGP_AJ_G0020417.1 mouse_genomes_project 13 33908436 33917982 - MGP_AJ_P0036704 Nrn1 protein_coding protein_coding MGP_AJ_T0036705.1 MGP_AJ_G0020417.1 mouse_genomes_project 13 33909269 33914168 - MGP_AJ_P0036705 Nrn1 protein_coding protein_coding MGP_AJ_T0036990.1 MGP_AJ_G0020518.1 mouse_genomes_project 13 51474845 51479305 - MGP_AJ_P0036990 Drd1 protein_coding protein_coding MGP_AJ_T0099476.1 MGP_AJ_G0037442.1 mouse_genomes_project 13 110256079 110256232 + Gm22768 snRNA snRNA MGP_AJ_T0036349.1 MGP_AJ_G0020232.1 mouse_genomes_project 13 18297047 18309787 - MGP_AJ_P0036349 Zscan26 protein_coding protein_coding MGP_AJ_T0036350.1 MGP_AJ_G0020232.1 mouse_genomes_project 13 18299979 18309790 - MGP_AJ_P0036350 Zscan26 protein_coding protein_coding MGP_AJ_T0036351.1 MGP_AJ_G0020232.1 mouse_genomes_project 13 18300376 18305517 - MGP_AJ_P0036351 Zscan26 protein_coding unknown_likely_coding MGP_AJ_T0038022.1 MGP_AJ_G0020857.1 mouse_genomes_project 13 102160265 102183562 - MGP_AJ_P0038022 Ppwd1 protein_coding protein_coding MGP_AJ_T0036861.1 MGP_AJ_G0020476.1 mouse_genomes_project 13 45504031 45506641 + MGP_AJ_P0036861 Id4 protein_coding protein_coding MGP_AJ_T0006601.1 MGP_AJ_G0005462.1 mouse_genomes_project 13 65327167 65338914 - lincRNA lincRNA MGP_AJ_T0038103.1 MGP_AJ_G0020880.1 mouse_genomes_project 13 108350516 108356404 + MGP_AJ_P0038103 Plk2 protein_coding protein_coding MGP_AJ_T0036479.1 MGP_AJ_G0020325.1 mouse_genomes_project 13 21069698 21164374 - MGP_AJ_P0036479 Lrrc16a protein_coding nonsense_mediated_decay MGP_AJ_T0036480.1 MGP_AJ_G0020325.1 mouse_genomes_project 13 21069838 21079911 - MGP_AJ_P0036480 Lrrc16a protein_coding protein_coding MGP_AJ_T0036481.1 MGP_AJ_G0020325.1 mouse_genomes_project 13 21070013 21338930 - MGP_AJ_P0036481 Lrrc16a protein_coding protein_coding MGP_AJ_T0036482.1 MGP_AJ_G0020325.1 mouse_genomes_project 13 21070415 21338797 - MGP_AJ_P0036482 Lrrc16a protein_coding protein_coding MGP_AJ_T0036483.1 MGP_AJ_G0020325.1 mouse_genomes_project 13 21090580 21114102 - Lrrc16a protein_coding processed_transcript MGP_AJ_T0036484.1 MGP_AJ_G0020325.1 mouse_genomes_project 13 21118333 21154613 - Lrrc16a protein_coding retained_intron MGP_AJ_T0036485.1 MGP_AJ_G0020325.1 mouse_genomes_project 13 21164349 21168612 - Lrrc16a protein_coding processed_transcript MGP_AJ_T0036486.1 MGP_AJ_G0020325.1 mouse_genomes_project 13 21194870 21338864 - Lrrc16a protein_coding retained_intron MGP_AJ_T0036487.1 MGP_AJ_G0020325.1 mouse_genomes_project 13 21196402 21212368 - Lrrc16a protein_coding processed_transcript MGP_AJ_T0036488.1 MGP_AJ_G0020325.1 mouse_genomes_project 13 21212595 21338567 - MGP_AJ_P0036488 Lrrc16a protein_coding protein_coding MGP_AJ_T0036489.1 MGP_AJ_G0020325.1 mouse_genomes_project 13 21222256 21264174 - MGP_AJ_P0036489 Lrrc16a protein_coding protein_coding MGP_AJ_T0036490.1 MGP_AJ_G0020325.1 mouse_genomes_project 13 21231208 21296780 - Lrrc16a protein_coding processed_transcript MGP_AJ_T0038025.1 MGP_AJ_G0020859.1 mouse_genomes_project 13 102237945 102448261 + MGP_AJ_P0038025 Adamts6 protein_coding unknown_likely_coding MGP_AJ_T0037283.1 MGP_AJ_G0020593.1 mouse_genomes_project 13 57127734 57169212 - MGP_AJ_P0037283 Golm1 protein_coding protein_coding MGP_AJ_T0037284.1 MGP_AJ_G0020593.1 mouse_genomes_project 13 57127734 57169212 - MGP_AJ_P0037284 Golm1 protein_coding protein_coding MGP_AJ_T0099445.1 MGP_AJ_G0037411.1 mouse_genomes_project 13 17709443 17709567 + Gm25605 snRNA snRNA MGP_AJ_T0037507.1 MGP_AJ_G0020705.1 mouse_genomes_project 13 71484408 71500638 - MGP_AJ_P0037507 Slc6a18 protein_coding protein_coding MGP_AJ_T0037508.1 MGP_AJ_G0020705.1 mouse_genomes_project 13 71484408 71500638 - MGP_AJ_P0037508 Slc6a18 protein_coding protein_coding MGP_AJ_T0037509.1 MGP_AJ_G0020705.1 mouse_genomes_project 13 71484408 71500638 - MGP_AJ_P0037509 Slc6a18 protein_coding protein_coding MGP_AJ_T0037510.1 MGP_AJ_G0020705.1 mouse_genomes_project 13 71486738 71500544 - MGP_AJ_P0037510 Slc6a18 protein_coding unknown_likely_coding MGP_AJ_T0037855.1 MGP_AJ_G0020810.1 mouse_genomes_project 13 94924688 94991335 + MGP_AJ_P0037855 Fam169a protein_coding protein_coding MGP_AJ_T0037856.1 MGP_AJ_G0020810.1 mouse_genomes_project 13 94928891 94991335 + MGP_AJ_P0037856 Fam169a protein_coding protein_coding MGP_AJ_T0012920.1 MGP_AJ_G0011015.1 mouse_genomes_project 13 28334021 28334591 + processed_pseudogene processed_pseudogene MGP_AJ_T0037106.1 MGP_AJ_G0020541.1 mouse_genomes_project 13 52597821 52613248 + MGP_AJ_P0037106 Fgfr4 protein_coding protein_coding MGP_AJ_T0037107.1 MGP_AJ_G0020541.1 mouse_genomes_project 13 52600850 52601839 + Fgfr4 protein_coding processed_transcript MGP_AJ_T0037108.1 MGP_AJ_G0020541.1 mouse_genomes_project 13 52601300 52602088 + Fgfr4 protein_coding retained_intron MGP_AJ_T0098913.1 MGP_AJ_G0036893.1 mouse_genomes_project 13 26406620 26407464 - Gm11364 sense_intronic sense_intronic MGP_AJ_T0012937.1 MGP_AJ_G0011032.1 mouse_genomes_project 13 65158675 65159375 + processed_pseudogene processed_pseudogene MGP_AJ_T0036421.1 MGP_AJ_G0020284.1 mouse_genomes_project 13 19631371 19632368 - MGP_AJ_P0036421 Vmn1r208 protein_coding protein_coding MGP_AJ_T0012915.1 MGP_AJ_G0011010.1 mouse_genomes_project 13 27263435 27263558 + processed_pseudogene processed_pseudogene MGP_AJ_T0036115.1 MGP_AJ_G0020154.1 mouse_genomes_project 13 425364 426267 + MGP_AJ_P0036115 Calm4 protein_coding protein_coding MGP_AJ_T0036116.1 MGP_AJ_G0020154.1 mouse_genomes_project 13 425489 425978 + MGP_AJ_P0036116 Calm4 protein_coding protein_coding MGP_AJ_T0036735.1 MGP_AJ_G0020428.1 mouse_genomes_project 13 35779573 35812669 - MGP_AJ_P0036735 Bloc1s5 protein_coding protein_coding MGP_AJ_T0037308.1 MGP_AJ_G0020612.1 mouse_genomes_project 13 58526319 58531924 - MGP_AJ_P0037308 Ctsq protein_coding protein_coding MGP_AJ_T0037309.1 MGP_AJ_G0020612.1 mouse_genomes_project 13 58526329 58529483 - Ctsq protein_coding retained_intron MGP_AJ_T0037819.1 MGP_AJ_G0020795.1 mouse_genomes_project 13 93313915 93315295 - MGP_AJ_P0037819 S100z protein_coding protein_coding MGP_AJ_T0006650.1 MGP_AJ_G0005498.1 mouse_genomes_project 13 109949762 109953876 + Gm15322 lincRNA lincRNA MGP_AJ_T0009914.1 MGP_AJ_G0008036.1 mouse_genomes_project 13 7223539 7223622 - Gm23415 miRNA miRNA MGP_AJ_T0037535.1 MGP_AJ_G0020717.1 mouse_genomes_project 13 72042157 72111085 - MGP_AJ_P0037535 Ahrr protein_coding protein_coding MGP_AJ_T0037536.1 MGP_AJ_G0020717.1 mouse_genomes_project 13 72044567 72085528 - Ahrr protein_coding retained_intron MGP_AJ_T0037537.1 MGP_AJ_G0020717.1 mouse_genomes_project 13 72051529 72088655 - Ahrr protein_coding processed_transcript MGP_AJ_T0037538.1 MGP_AJ_G0020717.1 mouse_genomes_project 13 72053300 72089411 - Ahrr protein_coding processed_transcript MGP_AJ_T0037465.1 MGP_AJ_G0020685.1 mouse_genomes_project 13 66390386 66407121 + MGP_AJ_P0037465 1700001L19Rik protein_coding protein_coding MGP_AJ_T0037717.1 MGP_AJ_G0020762.1 mouse_genomes_project 13 89589778 89637332 + MGP_AJ_P0037717 Acot12 protein_coding protein_coding MGP_AJ_T0037718.1 MGP_AJ_G0020762.1 mouse_genomes_project 13 89589799 89612413 + Acot12 protein_coding retained_intron MGP_AJ_T0037719.1 MGP_AJ_G0020762.1 mouse_genomes_project 13 89630514 89636088 + Acot12 protein_coding processed_transcript MGP_AJ_T0100713.1 MGP_AJ_G0038679.1 mouse_genomes_project 13 5571337 5571456 - snoRNA snoRNA MGP_AJ_T0037485.1 MGP_AJ_G0020694.1 mouse_genomes_project 13 68687848 68689404 + MGP_AJ_P0037485 8030423J24Rik protein_coding protein_coding MGP_AJ_T0006523.1 MGP_AJ_G0005409.1 mouse_genomes_project 13 20287926 20294652 + lincRNA lincRNA MGP_AJ_T0036327.1 MGP_AJ_G0020225.1 mouse_genomes_project 13 18020478 18021447 + Trim27 protein_coding processed_transcript MGP_AJ_T0036328.1 MGP_AJ_G0020225.1 mouse_genomes_project 13 18021243 18035543 + MGP_AJ_P0036328 Trim27 protein_coding protein_coding MGP_AJ_T0036329.1 MGP_AJ_G0020225.1 mouse_genomes_project 13 18030887 18031447 + Trim27 protein_coding retained_intron MGP_AJ_T0036330.1 MGP_AJ_G0020225.1 mouse_genomes_project 13 18031118 18033502 + MGP_AJ_P0036330 Trim27 protein_coding nonsense_mediated_decay MGP_AJ_T0037215.1 MGP_AJ_G0020583.1 mouse_genomes_project 13 55657463 55696868 - MGP_AJ_P0037215 Ubqln1 protein_coding protein_coding MGP_AJ_T0037216.1 MGP_AJ_G0020583.1 mouse_genomes_project 13 55657463 55696868 - MGP_AJ_P0037216 Ubqln1 protein_coding protein_coding MGP_AJ_T0036763.1 MGP_AJ_G0020442.1 mouse_genomes_project 13 38432619 38432794 - MGP_AJ_P0036763 Gm17364 protein_coding protein_coding MGP_AJ_T0003426.1 MGP_AJ_G0003141.1 mouse_genomes_project 13 6982300 7287447 + antisense antisense MGP_AJ_T0012958.1 MGP_AJ_G0011053.1 mouse_genomes_project 13 90142929 90143178 + processed_pseudogene processed_pseudogene MGP_AJ_T0006641.1 MGP_AJ_G0005491.1 mouse_genomes_project 13 99552163 99552779 - Gm29341 lincRNA lincRNA MGP_AJ_T0036828.1 MGP_AJ_G0020466.1 mouse_genomes_project 13 43616223 43630335 + MGP_AJ_P0036828 Rbm24 protein_coding protein_coding MGP_AJ_T0037384.1 MGP_AJ_G0020641.1 mouse_genomes_project 13 62798733 62799660 + MGP_AJ_P0037384 Olfr466 protein_coding protein_coding MGP_AJ_T0006577.1 MGP_AJ_G0005448.1 mouse_genomes_project 13 46219674 46223467 + Fam120aos lincRNA lincRNA MGP_AJ_T0037445.1 MGP_AJ_G0020674.1 mouse_genomes_project 13 65342215 65473925 - MGP_AJ_P0037445 protein_coding protein_coding MGP_AJ_T0037446.1 MGP_AJ_G0020674.1 mouse_genomes_project 13 65424738 65473972 - MGP_AJ_P0037446 protein_coding protein_coding MGP_AJ_T0037449.1 MGP_AJ_G0020674.1 mouse_genomes_project 13 65460987 65467881 - MGP_AJ_P0037449 protein_coding protein_coding MGP_AJ_T0036731.1 MGP_AJ_G0020426.1 mouse_genomes_project 13 35522664 35674997 + MGP_AJ_P0036731 Bmp6 protein_coding protein_coding MGP_AJ_T0012934.1 MGP_AJ_G0011029.1 mouse_genomes_project 13 61103038 61103374 - processed_pseudogene processed_pseudogene MGP_AJ_T0017344.1 MGP_AJ_G0015223.1 mouse_genomes_project 13 20327933 20399194 + 4930586N03Rik processed_transcript processed_transcript MGP_AJ_T0100740.1 MGP_AJ_G0038706.1 mouse_genomes_project 13 73903516 73903647 - Gm23319 snoRNA snoRNA MGP_AJ_T0006533.1 MGP_AJ_G0005417.1 mouse_genomes_project 13 26118040 26126705 + Gm26735 lincRNA lincRNA MGP_AJ_T0036760.1 MGP_AJ_G0020440.1 mouse_genomes_project 13 38344516 38382220 - MGP_AJ_P0036760 Elovl2 protein_coding protein_coding MGP_AJ_T0036761.1 MGP_AJ_G0020440.1 mouse_genomes_project 13 38344520 38381977 - MGP_AJ_P0036761 Elovl2 protein_coding protein_coding MGP_AJ_T0036532.1 MGP_AJ_G0020337.1 mouse_genomes_project 13 22335725 22353768 - MGP_AJ_P0036532 Nrsn1 protein_coding protein_coding MGP_AJ_T0036533.1 MGP_AJ_G0020337.1 mouse_genomes_project 13 22335877 22346371 - MGP_AJ_P0036533 Nrsn1 protein_coding protein_coding MGP_AJ_T0036534.1 MGP_AJ_G0020337.1 mouse_genomes_project 13 22337093 22346368 - Nrsn1 protein_coding processed_transcript MGP_AJ_T0036535.1 MGP_AJ_G0020337.1 mouse_genomes_project 13 22353720 22354188 - Nrsn1 protein_coding processed_transcript MGP_AJ_T0038188.1 MGP_AJ_G0020916.1 mouse_genomes_project 13 116443700 116450976 - MGP_AJ_P0038188 Mrps30 protein_coding protein_coding MGP_AJ_T0038187.1 MGP_AJ_G0020915.1 mouse_genomes_project 13 115623019 116018543 + MGP_AJ_P0038187 Hcn1 protein_coding protein_coding MGP_AJ_T0017363.1 MGP_AJ_G0015234.1 mouse_genomes_project 13 87544760 87652470 + Gm4117 processed_transcript processed_transcript MGP_AJ_T0017364.1 MGP_AJ_G0015234.1 mouse_genomes_project 13 87544764 87699744 + Gm4117 processed_transcript processed_transcript MGP_AJ_T0036819.1 MGP_AJ_G0020461.1 mouse_genomes_project 13 42564713 42587178 + MGP_AJ_P0036819 Mylip protein_coding protein_coding MGP_AJ_T0003434.1 MGP_AJ_G0003148.1 mouse_genomes_project 13 19631700 19632514 + Gm11314 antisense antisense MGP_AJ_T0036617.1 MGP_AJ_G0020382.1 mouse_genomes_project 13 29966833 29967226 - MGP_AJ_P0036617 D930007J09Rik protein_coding protein_coding MGP_AJ_T0036576.1 MGP_AJ_G0020365.1 mouse_genomes_project 13 26362163 27014077 - MGP_AJ_P0036576 Cdkal1 protein_coding nonsense_mediated_decay MGP_AJ_T0036577.1 MGP_AJ_G0020365.1 mouse_genomes_project 13 26492097 27014104 - MGP_AJ_P0036577 Cdkal1 protein_coding protein_coding MGP_AJ_T0036578.1 MGP_AJ_G0020365.1 mouse_genomes_project 13 26567264 26637098 - MGP_AJ_P0036578 Cdkal1 protein_coding protein_coding MGP_AJ_T0036579.1 MGP_AJ_G0020365.1 mouse_genomes_project 13 26606266 26679481 - MGP_AJ_P0036579 Cdkal1 protein_coding protein_coding MGP_AJ_T0036580.1 MGP_AJ_G0020365.1 mouse_genomes_project 13 26636358 27014073 - Cdkal1 protein_coding retained_intron MGP_AJ_T0036581.1 MGP_AJ_G0020365.1 mouse_genomes_project 13 26676233 27014073 - Cdkal1 protein_coding retained_intron MGP_AJ_T0036582.1 MGP_AJ_G0020365.1 mouse_genomes_project 13 26683829 27014069 - MGP_AJ_P0036582 Cdkal1 protein_coding nonsense_mediated_decay MGP_AJ_T0036583.1 MGP_AJ_G0020365.1 mouse_genomes_project 13 26863307 27014087 - Cdkal1 protein_coding retained_intron MGP_AJ_T0036584.1 MGP_AJ_G0020365.1 mouse_genomes_project 13 26931188 27013861 - MGP_AJ_P0036584 Cdkal1 protein_coding protein_coding MGP_AJ_T0036585.1 MGP_AJ_G0020365.1 mouse_genomes_project 13 26956033 27014093 - MGP_AJ_P0036585 Cdkal1 protein_coding protein_coding MGP_AJ_T0036586.1 MGP_AJ_G0020365.1 mouse_genomes_project 13 26994437 27014095 - MGP_AJ_P0036586 Cdkal1 protein_coding nonsense_mediated_decay MGP_AJ_T0036361.1 MGP_AJ_G0020239.1 mouse_genomes_project 13 18423694 18424638 - MGP_AJ_P0036361 Olfr1535 protein_coding protein_coding MGP_AJ_T0100732.1 MGP_AJ_G0038698.1 mouse_genomes_project 13 53632529 53632652 + Gm25148 snoRNA snoRNA MGP_AJ_T0006595.1 MGP_AJ_G0005458.1 mouse_genomes_project 13 55630241 55631157 + 1700066J03Rik lincRNA lincRNA MGP_AJ_T0036820.1 MGP_AJ_G0020462.1 mouse_genomes_project 13 42681911 42721349 + MGP_AJ_P0036820 Gmpr protein_coding protein_coding MGP_AJ_T0036821.1 MGP_AJ_G0020462.1 mouse_genomes_project 13 42688376 42720865 + MGP_AJ_P0036821 Gmpr protein_coding protein_coding MGP_AJ_T0036822.1 MGP_AJ_G0020462.1 mouse_genomes_project 13 42713778 42717517 + Gmpr protein_coding retained_intron MGP_AJ_T0037619.1 MGP_AJ_G0020744.1 mouse_genomes_project 13 79568983 79606693 - MGP_AJ_P0037619 Polr3g protein_coding protein_coding MGP_AJ_T0037620.1 MGP_AJ_G0020744.1 mouse_genomes_project 13 79569020 79582392 - Polr3g protein_coding retained_intron MGP_AJ_T0037621.1 MGP_AJ_G0020744.1 mouse_genomes_project 13 79588949 79606636 - MGP_AJ_P0037621 Polr3g protein_coding nonsense_mediated_decay MGP_AJ_T0037622.1 MGP_AJ_G0020744.1 mouse_genomes_project 13 79589386 79606625 - MGP_AJ_P0037622 Polr3g protein_coding protein_coding MGP_AJ_T0037623.1 MGP_AJ_G0020744.1 mouse_genomes_project 13 79595059 79606682 - Polr3g protein_coding retained_intron MGP_AJ_T0036318.1 MGP_AJ_G0020220.1 mouse_genomes_project 13 16655220 16725517 - MGP_AJ_P0036318 Gpr141 protein_coding protein_coding MGP_AJ_T0038163.1 MGP_AJ_G0020905.1 mouse_genomes_project 13 112297548 112394021 - MGP_AJ_P0038163 Ndufs4 protein_coding protein_coding MGP_AJ_T0036566.1 MGP_AJ_G0020357.1 mouse_genomes_project 13 24909794 24916870 + MGP_AJ_P0036566 Prl2a1 protein_coding protein_coding MGP_AJ_T0003488.1 MGP_AJ_G0003180.1 mouse_genomes_project 13 89709150 89709763 + 1700119I11Rik antisense antisense MGP_AJ_T0003489.1 MGP_AJ_G0003180.1 mouse_genomes_project 13 89709203 89709757 + 1700119I11Rik antisense antisense MGP_AJ_T0036747.1 MGP_AJ_G0020435.1 mouse_genomes_project 13 38158685 38170636 + MGP_AJ_P0036747 Pak1ip1 protein_coding protein_coding MGP_AJ_T0036748.1 MGP_AJ_G0020435.1 mouse_genomes_project 13 38158686 38166261 + Pak1ip1 protein_coding retained_intron MGP_AJ_T0036749.1 MGP_AJ_G0020435.1 mouse_genomes_project 13 38158900 38170628 + Pak1ip1 protein_coding retained_intron MGP_AJ_T0036750.1 MGP_AJ_G0020435.1 mouse_genomes_project 13 38158922 38165910 + Pak1ip1 protein_coding processed_transcript MGP_AJ_T0036751.1 MGP_AJ_G0020435.1 mouse_genomes_project 13 38158928 38170640 + Pak1ip1 protein_coding retained_intron MGP_AJ_T0036742.1 MGP_AJ_G0020433.1 mouse_genomes_project 13 37869610 37884320 - MGP_AJ_P0036742 Tfap2a protein_coding protein_coding MGP_AJ_T0036743.1 MGP_AJ_G0020433.1 mouse_genomes_project 13 37870627 37887600 - MGP_AJ_P0036743 Tfap2a protein_coding protein_coding MGP_AJ_T0006553.1 MGP_AJ_G0005430.1 mouse_genomes_project 13 29524835 29528615 - Gm11381 lincRNA lincRNA MGP_AJ_T0036423.1 MGP_AJ_G0020286.1 mouse_genomes_project 13 19816117 19817107 - MGP_AJ_P0036423 Vmn1r211 protein_coding protein_coding MGP_AJ_T0036800.1 MGP_AJ_G0020458.1 mouse_genomes_project 13 41902943 41905038 + Jarid2 protein_coding processed_transcript MGP_AJ_T0036801.1 MGP_AJ_G0020458.1 mouse_genomes_project 13 41903004 42023510 + MGP_AJ_P0036801 Jarid2 protein_coding protein_coding MGP_AJ_T0036802.1 MGP_AJ_G0020458.1 mouse_genomes_project 13 41903264 41998078 + MGP_AJ_P0036802 Jarid2 protein_coding protein_coding MGP_AJ_T0036803.1 MGP_AJ_G0020458.1 mouse_genomes_project 13 41904243 42096946 + MGP_AJ_P0036803 Jarid2 protein_coding protein_coding MGP_AJ_T0036804.1 MGP_AJ_G0020458.1 mouse_genomes_project 13 41904292 42097834 + MGP_AJ_P0036804 Jarid2 protein_coding protein_coding MGP_AJ_T0036805.1 MGP_AJ_G0020458.1 mouse_genomes_project 13 41904307 42079438 + MGP_AJ_P0036805 Jarid2 protein_coding protein_coding MGP_AJ_T0036806.1 MGP_AJ_G0020458.1 mouse_genomes_project 13 41904328 42050057 + Jarid2 protein_coding processed_transcript MGP_AJ_T0036807.1 MGP_AJ_G0020458.1 mouse_genomes_project 13 41904735 42098482 + MGP_AJ_P0036807 Jarid2 protein_coding protein_coding MGP_AJ_T0036808.1 MGP_AJ_G0020458.1 mouse_genomes_project 13 41904751 41997971 + MGP_AJ_P0036808 Jarid2 protein_coding protein_coding MGP_AJ_T0036809.1 MGP_AJ_G0020458.1 mouse_genomes_project 13 41904832 42061221 + Jarid2 protein_coding retained_intron MGP_AJ_T0036810.1 MGP_AJ_G0020458.1 mouse_genomes_project 13 41904834 42098479 + Jarid2 protein_coding retained_intron MGP_AJ_T0036811.1 MGP_AJ_G0020458.1 mouse_genomes_project 13 41905061 42060941 + MGP_AJ_P0036811 Jarid2 protein_coding nonsense_mediated_decay MGP_AJ_T0036812.1 MGP_AJ_G0020458.1 mouse_genomes_project 13 41905322 42050048 + Jarid2 protein_coding processed_transcript MGP_AJ_T0036813.1 MGP_AJ_G0020458.1 mouse_genomes_project 13 41907450 42050020 + Jarid2 protein_coding processed_transcript MGP_AJ_T0036814.1 MGP_AJ_G0020458.1 mouse_genomes_project 13 42015385 42091157 + MGP_AJ_P0036814 Jarid2 protein_coding protein_coding MGP_AJ_T0036815.1 MGP_AJ_G0020458.1 mouse_genomes_project 13 42015477 42072661 + MGP_AJ_P0036815 Jarid2 protein_coding nonsense_mediated_decay MGP_AJ_T0012907.1 MGP_AJ_G0011002.1 mouse_genomes_project 13 22775067 22775930 - processed_pseudogene processed_pseudogene MGP_AJ_T0012885.1 MGP_AJ_G0010980.1 mouse_genomes_project 13 18373021 18373696 - processed_pseudogene processed_pseudogene MGP_AJ_T0012949.1 MGP_AJ_G0011044.1 mouse_genomes_project 13 74865119 74865788 + processed_pseudogene processed_pseudogene MGP_AJ_T0036700.1 MGP_AJ_G0020414.1 mouse_genomes_project 13 33129370 33140447 + Ppp1r3g protein_coding processed_transcript MGP_AJ_T0036701.1 MGP_AJ_G0020414.1 mouse_genomes_project 13 33139975 33142511 + MGP_AJ_P0036701 Ppp1r3g protein_coding protein_coding MGP_AJ_T0006626.1 MGP_AJ_G0005480.1 mouse_genomes_project 13 95146095 95148854 + C430039J16Rik lincRNA lincRNA MGP_AJ_T0100727.1 MGP_AJ_G0038693.1 mouse_genomes_project 13 44186702 44186831 + Gm24769 snoRNA snoRNA MGP_AJ_T0036947.1 MGP_AJ_G0020507.1 mouse_genomes_project 13 49105881 49121598 - MGP_AJ_P0036947 Gm15440 protein_coding protein_coding MGP_AJ_T0036605.1 MGP_AJ_G0020376.1 mouse_genomes_project 13 28692842 28695495 + MGP_AJ_P0036605 Foxq1 protein_coding protein_coding MGP_AJ_T0036336.1 MGP_AJ_G0020229.1 mouse_genomes_project 13 18216870 18223867 + MGP_AJ_P0036336 Zscan12 protein_coding protein_coding MGP_AJ_T0036337.1 MGP_AJ_G0020229.1 mouse_genomes_project 13 18217331 18223867 + MGP_AJ_P0036337 Zscan12 protein_coding protein_coding MGP_AJ_T0036113.1 MGP_AJ_G0020152.1 mouse_genomes_project 13 393969 395395 - MGP_AJ_P0036113 Calml3 protein_coding protein_coding MGP_AJ_T0036495.1 MGP_AJ_G0020327.1 mouse_genomes_project 13 21647173 21804008 + MGP_AJ_P0036495 Fam65b protein_coding protein_coding MGP_AJ_T0036496.1 MGP_AJ_G0020327.1 mouse_genomes_project 13 21681157 21770725 + Fam65b protein_coding retained_intron MGP_AJ_T0036497.1 MGP_AJ_G0020327.1 mouse_genomes_project 13 21681157 21774515 + MGP_AJ_P0036497 Fam65b protein_coding protein_coding MGP_AJ_T0036498.1 MGP_AJ_G0020327.1 mouse_genomes_project 13 21681174 21774411 + MGP_AJ_P0036498 Fam65b protein_coding nonsense_mediated_decay MGP_AJ_T0036499.1 MGP_AJ_G0020327.1 mouse_genomes_project 13 21705191 21804008 + MGP_AJ_P0036499 Fam65b protein_coding protein_coding MGP_AJ_T0036500.1 MGP_AJ_G0020327.1 mouse_genomes_project 13 21705193 21739752 + Fam65b protein_coding retained_intron MGP_AJ_T0036501.1 MGP_AJ_G0020327.1 mouse_genomes_project 13 21705227 21766063 + MGP_AJ_P0036501 Fam65b protein_coding protein_coding MGP_AJ_T0036502.1 MGP_AJ_G0020327.1 mouse_genomes_project 13 21705239 21774515 + MGP_AJ_P0036502 Fam65b protein_coding protein_coding MGP_AJ_T0036503.1 MGP_AJ_G0020327.1 mouse_genomes_project 13 21705256 21764288 + Fam65b protein_coding retained_intron MGP_AJ_T0036504.1 MGP_AJ_G0020327.1 mouse_genomes_project 13 21740685 21745766 + Fam65b protein_coding retained_intron MGP_AJ_T0036505.1 MGP_AJ_G0020327.1 mouse_genomes_project 13 21743218 21745762 + Fam65b protein_coding retained_intron MGP_AJ_T0036506.1 MGP_AJ_G0020327.1 mouse_genomes_project 13 21755962 21762622 + Fam65b protein_coding retained_intron MGP_AJ_T0036507.1 MGP_AJ_G0020327.1 mouse_genomes_project 13 21778633 21784255 + Fam65b protein_coding retained_intron MGP_AJ_T0037949.1 MGP_AJ_G0020841.1 mouse_genomes_project 13 98591250 98606477 + MGP_AJ_P0037949 protein_coding protein_coding MGP_AJ_T0037950.1 MGP_AJ_G0020841.1 mouse_genomes_project 13 98591633 98594594 + protein_coding retained_intron MGP_AJ_T0037951.1 MGP_AJ_G0020841.1 mouse_genomes_project 13 98591897 98594672 + protein_coding retained_intron MGP_AJ_T0102287.1 MGP_AJ_G0040029.1 mouse_genomes_project 13 19368665 19369558 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0036736.1 MGP_AJ_G0020429.1 mouse_genomes_project 13 35824459 35837616 - MGP_AJ_P0036736 Eef1e1 protein_coding protein_coding MGP_AJ_T0037920.1 MGP_AJ_G0020835.1 mouse_genomes_project 13 98020645 98041535 + MGP_AJ_P0037920 Smn1 protein_coding protein_coding MGP_AJ_T0037921.1 MGP_AJ_G0020835.1 mouse_genomes_project 13 98020651 98022936 + Smn1 protein_coding retained_intron MGP_AJ_T0037922.1 MGP_AJ_G0020835.1 mouse_genomes_project 13 98020651 98023606 + MGP_AJ_P0037922 Smn1 protein_coding nonsense_mediated_decay MGP_AJ_T0037923.1 MGP_AJ_G0020835.1 mouse_genomes_project 13 98020687 98041325 + MGP_AJ_P0037923 Smn1 protein_coding protein_coding MGP_AJ_T0037924.1 MGP_AJ_G0020835.1 mouse_genomes_project 13 98020717 98035020 + MGP_AJ_P0037924 Smn1 protein_coding protein_coding MGP_AJ_T0037925.1 MGP_AJ_G0020835.1 mouse_genomes_project 13 98021918 98022729 + Smn1 protein_coding retained_intron MGP_AJ_T0037926.1 MGP_AJ_G0020835.1 mouse_genomes_project 13 98023668 98024424 + Smn1 protein_coding retained_intron MGP_AJ_T0037927.1 MGP_AJ_G0020835.1 mouse_genomes_project 13 98034848 98041535 + Smn1 protein_coding retained_intron MGP_AJ_T0037928.1 MGP_AJ_G0020835.1 mouse_genomes_project 13 98039238 98041295 + Smn1 protein_coding retained_intron MGP_AJ_T0036594.1 MGP_AJ_G0020369.1 mouse_genomes_project 13 27682326 27687381 - MGP_AJ_P0036594 Uqcrfs1 protein_coding protein_coding MGP_AJ_T0036231.1 MGP_AJ_G0020186.1 mouse_genomes_project 13 8981763 9025241 + MGP_AJ_P0036231 Heatr1 protein_coding protein_coding MGP_AJ_T0036656.1 MGP_AJ_G0020399.1 mouse_genomes_project 13 31125311 31149413 + MGP_AJ_P0036656 Nqo2 protein_coding protein_coding MGP_AJ_T0036657.1 MGP_AJ_G0020399.1 mouse_genomes_project 13 31125311 31149413 + MGP_AJ_P0036657 Nqo2 protein_coding protein_coding MGP_AJ_T0036616.1 MGP_AJ_G0020381.1 mouse_genomes_project 13 29966414 29986687 + MGP_AJ_P0036616 Wrnip1 protein_coding protein_coding MGP_AJ_T0036382.1 MGP_AJ_G0020257.1 mouse_genomes_project 13 18645249 18702047 + MGP_AJ_P0036382 Hist1h2bq protein_coding protein_coding MGP_AJ_T0036383.1 MGP_AJ_G0020257.1 mouse_genomes_project 13 18645249 18702247 + MGP_AJ_P0036383 Hist1h2bq protein_coding protein_coding MGP_AJ_T0009930.1 MGP_AJ_G0008052.1 mouse_genomes_project 13 45779552 45779655 - Mirlet7d miRNA miRNA MGP_AJ_T0037879.1 MGP_AJ_G0020818.1 mouse_genomes_project 13 96172917 96199991 + MGP_AJ_P0037879 Gm21976 protein_coding nonsense_mediated_decay MGP_AJ_T0037880.1 MGP_AJ_G0020818.1 mouse_genomes_project 13 96172922 96186779 + MGP_AJ_P0037880 Gm21976 protein_coding protein_coding MGP_AJ_T0037881.1 MGP_AJ_G0020818.1 mouse_genomes_project 13 96172968 96199991 + MGP_AJ_P0037881 Gm21976 protein_coding protein_coding MGP_AJ_T0037882.1 MGP_AJ_G0020818.1 mouse_genomes_project 13 96195369 96199929 + MGP_AJ_P0037882 Gm21976 protein_coding protein_coding MGP_AJ_T0099442.1 MGP_AJ_G0037408.1 mouse_genomes_project 13 12925607 12925714 - Gm22628 snRNA snRNA MGP_AJ_T0006518.1 MGP_AJ_G0005405.1 mouse_genomes_project 13 2458928 2461511 - 1700016G22Rik lincRNA lincRNA MGP_AJ_T0006519.1 MGP_AJ_G0005405.1 mouse_genomes_project 13 2458928 2461131 - 1700016G22Rik lincRNA lincRNA MGP_AJ_T0012913.1 MGP_AJ_G0011008.1 mouse_genomes_project 13 25679646 25680135 - processed_pseudogene processed_pseudogene MGP_AJ_T0037420.1 MGP_AJ_G0020659.1 mouse_genomes_project 13 64990481 65032383 - MGP_AJ_P0037420 Gm28044 protein_coding nonsense_mediated_decay MGP_AJ_T0037421.1 MGP_AJ_G0020659.1 mouse_genomes_project 13 64992706 65019753 - Gm28044 protein_coding processed_transcript MGP_AJ_T0009946.1 MGP_AJ_G0008068.1 mouse_genomes_project 13 60958970 60959043 + Mir27b miRNA miRNA MGP_AJ_T0011357.1 MGP_AJ_G0009479.1 mouse_genomes_project 13 54176582 54176707 + Gm27834 misc_RNA misc_RNA MGP_AJ_T0012878.1 MGP_AJ_G0010973.1 mouse_genomes_project 13 8964186 8964643 + processed_pseudogene processed_pseudogene MGP_AJ_T0009936.1 MGP_AJ_G0008058.1 mouse_genomes_project 13 52904791 52904857 + Mir6943 miRNA miRNA MGP_AJ_T0036252.1 MGP_AJ_G0020198.1 mouse_genomes_project 13 10894712 10932501 - MGP_AJ_P0036252 Tbce protein_coding nonsense_mediated_decay MGP_AJ_T0036253.1 MGP_AJ_G0020198.1 mouse_genomes_project 13 10894714 10902266 - Tbce protein_coding retained_intron MGP_AJ_T0036254.1 MGP_AJ_G0020198.1 mouse_genomes_project 13 10894714 10898359 - Tbce protein_coding retained_intron MGP_AJ_T0036255.1 MGP_AJ_G0020198.1 mouse_genomes_project 13 10894715 10932560 - MGP_AJ_P0036255 Tbce protein_coding protein_coding MGP_AJ_T0036256.1 MGP_AJ_G0020198.1 mouse_genomes_project 13 10894716 10932560 - MGP_AJ_P0036256 Tbce protein_coding nonsense_mediated_decay MGP_AJ_T0036257.1 MGP_AJ_G0020198.1 mouse_genomes_project 13 10899825 10932543 - Tbce protein_coding retained_intron MGP_AJ_T0036258.1 MGP_AJ_G0020198.1 mouse_genomes_project 13 10901950 10906606 - Tbce protein_coding retained_intron MGP_AJ_T0036259.1 MGP_AJ_G0020198.1 mouse_genomes_project 13 10901988 10905813 - Tbce protein_coding retained_intron MGP_AJ_T0036260.1 MGP_AJ_G0020198.1 mouse_genomes_project 13 10901995 10906599 - Tbce protein_coding retained_intron MGP_AJ_T0036261.1 MGP_AJ_G0020198.1 mouse_genomes_project 13 10902003 10906265 - Tbce protein_coding processed_transcript MGP_AJ_T0036262.1 MGP_AJ_G0020198.1 mouse_genomes_project 13 10907146 10932534 - Tbce protein_coding retained_intron MGP_AJ_T0036263.1 MGP_AJ_G0020198.1 mouse_genomes_project 13 10911113 10932518 - Tbce protein_coding retained_intron MGP_AJ_T0036264.1 MGP_AJ_G0020198.1 mouse_genomes_project 13 10916036 10932539 - Tbce protein_coding retained_intron MGP_AJ_T0036870.1 MGP_AJ_G0020479.1 mouse_genomes_project 13 45821381 45869074 - MGP_AJ_P0036870 Ptpdc1 protein_coding protein_coding MGP_AJ_T0037983.1 MGP_AJ_G0020850.1 mouse_genomes_project 13 100700480 101301066 - MGP_AJ_P0037983 Mast4 protein_coding protein_coding MGP_AJ_T0037984.1 MGP_AJ_G0020850.1 mouse_genomes_project 13 100700485 101301334 - MGP_AJ_P0037984 Mast4 protein_coding protein_coding MGP_AJ_T0037985.1 MGP_AJ_G0020850.1 mouse_genomes_project 13 100702799 101059983 - MGP_AJ_P0037985 Mast4 protein_coding protein_coding MGP_AJ_T0037986.1 MGP_AJ_G0020850.1 mouse_genomes_project 13 100703020 100867274 - MGP_AJ_P0037986 Mast4 protein_coding protein_coding MGP_AJ_T0037987.1 MGP_AJ_G0020850.1 mouse_genomes_project 13 100703020 100920323 - MGP_AJ_P0037987 Mast4 protein_coding protein_coding MGP_AJ_T0037988.1 MGP_AJ_G0020850.1 mouse_genomes_project 13 100709986 100866954 - MGP_AJ_P0037988 Mast4 protein_coding protein_coding MGP_AJ_T0037989.1 MGP_AJ_G0020850.1 mouse_genomes_project 13 100722150 100920204 - MGP_AJ_P0037989 Mast4 protein_coding protein_coding MGP_AJ_T0037990.1 MGP_AJ_G0020850.1 mouse_genomes_project 13 100734735 100738991 - Mast4 protein_coding retained_intron MGP_AJ_T0037991.1 MGP_AJ_G0020850.1 mouse_genomes_project 13 100745608 100749839 - Mast4 protein_coding retained_intron MGP_AJ_T0037992.1 MGP_AJ_G0020850.1 mouse_genomes_project 13 100762040 101059966 - MGP_AJ_P0037992 Mast4 protein_coding protein_coding MGP_AJ_T0037993.1 MGP_AJ_G0020850.1 mouse_genomes_project 13 100764825 100768834 - Mast4 protein_coding retained_intron MGP_AJ_T0037994.1 MGP_AJ_G0020850.1 mouse_genomes_project 13 100813784 101301334 - MGP_AJ_P0037994 Mast4 protein_coding protein_coding MGP_AJ_T0037995.1 MGP_AJ_G0020850.1 mouse_genomes_project 13 100814940 100867243 - Mast4 protein_coding retained_intron MGP_AJ_T0037996.1 MGP_AJ_G0020850.1 mouse_genomes_project 13 100985202 101301336 - Mast4 protein_coding retained_intron MGP_AJ_T0037997.1 MGP_AJ_G0020850.1 mouse_genomes_project 13 101021066 101301371 - Mast4 protein_coding processed_transcript MGP_AJ_T0037998.1 MGP_AJ_G0020850.1 mouse_genomes_project 13 101032579 101301325 - Mast4 protein_coding processed_transcript MGP_AJ_T0037999.1 MGP_AJ_G0020850.1 mouse_genomes_project 13 101057314 101059982 - Mast4 protein_coding retained_intron MGP_AJ_T0038000.1 MGP_AJ_G0020850.1 mouse_genomes_project 13 101299845 101301366 - Mast4 protein_coding retained_intron MGP_AJ_T0037523.1 MGP_AJ_G0020710.1 mouse_genomes_project 13 71763575 71786527 + MGP_AJ_P0037523 Brd9 protein_coding protein_coding MGP_AJ_T0037524.1 MGP_AJ_G0020710.1 mouse_genomes_project 13 71763631 71786525 + MGP_AJ_P0037524 Brd9 protein_coding unknown_likely_coding MGP_AJ_T0036433.1 MGP_AJ_G0020296.1 mouse_genomes_project 13 20242952 20243785 + MGP_AJ_P0036433 Vmn1r193 protein_coding protein_coding MGP_AJ_T0098399.1 MGP_AJ_G0036383.1 mouse_genomes_project 13 44217236 44217755 + pseudogene pseudogene MGP_AJ_T0036840.1 MGP_AJ_G0020471.1 mouse_genomes_project 13 44219118 44221401 - MGP_AJ_P0036840 Nhlrc1 protein_coding protein_coding MGP_AJ_T0036904.1 MGP_AJ_G0020490.1 mouse_genomes_project 13 46717234 46921733 - MGP_AJ_P0036904 Cenpp protein_coding protein_coding MGP_AJ_T0000879.1 MGP_AJ_G0000813.1 mouse_genomes_project 13 45786184 45788574 - TEC TEC MGP_AJ_T0036891.1 MGP_AJ_G0020486.1 mouse_genomes_project 13 46483543 46500945 - MGP_AJ_P0036891 Susd3 protein_coding protein_coding MGP_AJ_T0036892.1 MGP_AJ_G0020486.1 mouse_genomes_project 13 46483682 46501357 - MGP_AJ_P0036892 Susd3 protein_coding protein_coding MGP_AJ_T0036893.1 MGP_AJ_G0020486.1 mouse_genomes_project 13 46484156 46501314 - MGP_AJ_P0036893 Susd3 protein_coding protein_coding MGP_AJ_T0036894.1 MGP_AJ_G0020486.1 mouse_genomes_project 13 46490338 46493272 - Susd3 protein_coding processed_transcript MGP_AJ_T0036895.1 MGP_AJ_G0020486.1 mouse_genomes_project 13 46490640 46500805 - MGP_AJ_P0036895 Susd3 protein_coding protein_coding MGP_AJ_T0036896.1 MGP_AJ_G0020486.1 mouse_genomes_project 13 46491557 46495554 - Susd3 protein_coding processed_transcript MGP_AJ_T0036291.1 MGP_AJ_G0020211.1 mouse_genomes_project 13 14863086 14869964 - MGP_AJ_P0036291 Yae1d1 protein_coding protein_coding MGP_AJ_T0036419.1 MGP_AJ_G0020282.1 mouse_genomes_project 13 19492849 19493758 + MGP_AJ_P0036419 Vmn1r204 protein_coding protein_coding MGP_AJ_T0036119.1 MGP_AJ_G0020156.1 mouse_genomes_project 13 513021 523598 + MGP_AJ_P0036119 Tubal3 protein_coding protein_coding MGP_AJ_T0037151.1 MGP_AJ_G0020558.1 mouse_genomes_project 13 53047155 53051685 + MGP_AJ_P0037151 Tmed9 protein_coding protein_coding MGP_AJ_T0036221.1 MGP_AJ_G0020182.1 mouse_genomes_project 13 6498103 6983666 - MGP_AJ_P0036221 Chrm3 protein_coding protein_coding MGP_AJ_T0036222.1 MGP_AJ_G0020182.1 mouse_genomes_project 13 6499846 6501616 - MGP_AJ_P0036222 Chrm3 protein_coding protein_coding MGP_AJ_T0036223.1 MGP_AJ_G0020182.1 mouse_genomes_project 13 6837681 6983385 - Chrm3 protein_coding processed_transcript MGP_AJ_T0038150.1 MGP_AJ_G0020896.1 mouse_genomes_project 13 111019931 111022862 - MGP_AJ_P0038150 protein_coding protein_coding MGP_AJ_T0038160.1 MGP_AJ_G0020902.1 mouse_genomes_project 13 111595248 111622761 - MGP_AJ_P0038160 Snx18 protein_coding protein_coding MGP_AJ_T0009941.1 MGP_AJ_G0008063.1 mouse_genomes_project 13 55878576 55878684 - Mir7-1 miRNA miRNA MGP_AJ_T0006524.1 MGP_AJ_G0005410.1 mouse_genomes_project 13 20463856 20466904 - C230035I16Rik lincRNA lincRNA MGP_AJ_T0006525.1 MGP_AJ_G0005410.1 mouse_genomes_project 13 20463988 20466708 - C230035I16Rik lincRNA lincRNA MGP_AJ_T0003492.1 MGP_AJ_G0003183.1 mouse_genomes_project 13 91532073 91546389 - AW495222 antisense antisense MGP_AJ_T0003493.1 MGP_AJ_G0003183.1 mouse_genomes_project 13 91542587 91546348 - AW495222 antisense antisense MGP_AJ_T0036117.1 MGP_AJ_G0020155.1 mouse_genomes_project 13 472187 506544 - MGP_AJ_P0036117 Net1 protein_coding protein_coding MGP_AJ_T0036118.1 MGP_AJ_G0020155.1 mouse_genomes_project 13 472187 483526 - MGP_AJ_P0036118 Net1 protein_coding protein_coding MGP_AJ_T0037268.1 MGP_AJ_G0020592.1 mouse_genomes_project 13 57077707 57092231 + MGP_AJ_P0037268 Naa35 protein_coding protein_coding MGP_AJ_T0037269.1 MGP_AJ_G0020592.1 mouse_genomes_project 13 57077743 57127536 + MGP_AJ_P0037269 Naa35 protein_coding protein_coding MGP_AJ_T0037270.1 MGP_AJ_G0020592.1 mouse_genomes_project 13 57077842 57101252 + MGP_AJ_P0037270 Naa35 protein_coding protein_coding MGP_AJ_T0037271.1 MGP_AJ_G0020592.1 mouse_genomes_project 13 57078618 57117261 + MGP_AJ_P0037271 Naa35 protein_coding protein_coding MGP_AJ_T0037272.1 MGP_AJ_G0020592.1 mouse_genomes_project 13 57087799 57092704 + Naa35 protein_coding retained_intron MGP_AJ_T0037273.1 MGP_AJ_G0020592.1 mouse_genomes_project 13 57090556 57110802 + MGP_AJ_P0037273 Naa35 protein_coding nonsense_mediated_decay MGP_AJ_T0037274.1 MGP_AJ_G0020592.1 mouse_genomes_project 13 57101697 57120377 + Naa35 protein_coding retained_intron MGP_AJ_T0037275.1 MGP_AJ_G0020592.1 mouse_genomes_project 13 57101822 57118192 + Naa35 protein_coding retained_intron MGP_AJ_T0037276.1 MGP_AJ_G0020592.1 mouse_genomes_project 13 57101857 57118218 + Naa35 protein_coding retained_intron MGP_AJ_T0037277.1 MGP_AJ_G0020592.1 mouse_genomes_project 13 57101942 57117333 + MGP_AJ_P0037277 Naa35 protein_coding protein_coding MGP_AJ_T0037278.1 MGP_AJ_G0020592.1 mouse_genomes_project 13 57110768 57127496 + Naa35 protein_coding processed_transcript MGP_AJ_T0037279.1 MGP_AJ_G0020592.1 mouse_genomes_project 13 57110818 57118408 + Naa35 protein_coding retained_intron MGP_AJ_T0037280.1 MGP_AJ_G0020592.1 mouse_genomes_project 13 57110819 57120699 + MGP_AJ_P0037280 Naa35 protein_coding protein_coding MGP_AJ_T0037281.1 MGP_AJ_G0020592.1 mouse_genomes_project 13 57117187 57121691 + Naa35 protein_coding retained_intron MGP_AJ_T0037282.1 MGP_AJ_G0020592.1 mouse_genomes_project 13 57125468 57127383 + Naa35 protein_coding retained_intron MGP_AJ_T0037815.1 MGP_AJ_G0020792.1 mouse_genomes_project 13 93155375 93167978 + MGP_AJ_P0037815 Zbed3 protein_coding protein_coding MGP_AJ_T0006645.1 MGP_AJ_G0005494.1 mouse_genomes_project 13 109481195 109511313 - Gm15290 lincRNA lincRNA MGP_AJ_T0000901.1 MGP_AJ_G0000835.1 mouse_genomes_project 13 112236168 112246581 + TEC TEC MGP_AJ_T0012943.1 MGP_AJ_G0011038.1 mouse_genomes_project 13 67790958 67791369 - processed_pseudogene processed_pseudogene MGP_AJ_T0036430.1 MGP_AJ_G0020293.1 mouse_genomes_project 13 20115525 20116422 + MGP_AJ_P0036430 Vmn1r218 protein_coding protein_coding MGP_AJ_T0036126.1 MGP_AJ_G0020160.1 mouse_genomes_project 13 775942 791555 + MGP_AJ_P0036126 protein_coding unknown_likely_coding MGP_AJ_T0036127.1 MGP_AJ_G0020160.1 mouse_genomes_project 13 775947 783730 + MGP_AJ_P0036127 protein_coding nonsense_mediated_decay MGP_AJ_T0036128.1 MGP_AJ_G0020160.1 mouse_genomes_project 13 775950 791549 + MGP_AJ_P0036128 protein_coding protein_coding MGP_AJ_T0036129.1 MGP_AJ_G0020160.1 mouse_genomes_project 13 779053 779981 + protein_coding processed_transcript MGP_AJ_T0012886.1 MGP_AJ_G0010981.1 mouse_genomes_project 13 18740249 18741246 - processed_pseudogene processed_pseudogene MGP_AJ_T0036792.1 MGP_AJ_G0020451.1 mouse_genomes_project 13 40371562 40475332 - MGP_AJ_P0036792 Gfod1 protein_coding protein_coding MGP_AJ_T0006549.1 MGP_AJ_G0005428.1 mouse_genomes_project 13 28700059 28717117 - 1700018A04Rik lincRNA lincRNA MGP_AJ_T0006550.1 MGP_AJ_G0005428.1 mouse_genomes_project 13 28702008 28717125 - 1700018A04Rik lincRNA lincRNA MGP_AJ_T0006551.1 MGP_AJ_G0005428.1 mouse_genomes_project 13 28712898 28717125 - 1700018A04Rik lincRNA lincRNA MGP_AJ_T0037839.1 MGP_AJ_G0020806.1 mouse_genomes_project 13 94389097 94488199 + MGP_AJ_P0037839 Col4a3bp protein_coding protein_coding MGP_AJ_T0037840.1 MGP_AJ_G0020806.1 mouse_genomes_project 13 94389214 94490354 + MGP_AJ_P0037840 Col4a3bp protein_coding protein_coding MGP_AJ_T0037841.1 MGP_AJ_G0020806.1 mouse_genomes_project 13 94389214 94490354 + MGP_AJ_P0037841 Col4a3bp protein_coding protein_coding MGP_AJ_T0102284.1 MGP_AJ_G0040026.1 mouse_genomes_project 13 19086279 19087044 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0037053.1 MGP_AJ_G0020534.1 mouse_genomes_project 13 52211034 52214406 + MGP_AJ_P0037053 Eif4e1b protein_coding protein_coding MGP_AJ_T0037054.1 MGP_AJ_G0020534.1 mouse_genomes_project 13 52211037 52213684 + MGP_AJ_P0037054 Eif4e1b protein_coding protein_coding MGP_AJ_T0037055.1 MGP_AJ_G0020534.1 mouse_genomes_project 13 52211037 52214500 + MGP_AJ_P0037055 Eif4e1b protein_coding protein_coding MGP_AJ_T0037056.1 MGP_AJ_G0020534.1 mouse_genomes_project 13 52211037 52213894 + MGP_AJ_P0037056 Eif4e1b protein_coding protein_coding MGP_AJ_T0037057.1 MGP_AJ_G0020534.1 mouse_genomes_project 13 52211037 52214406 + MGP_AJ_P0037057 Eif4e1b protein_coding protein_coding MGP_AJ_T0037058.1 MGP_AJ_G0020534.1 mouse_genomes_project 13 52211039 52214407 + MGP_AJ_P0037058 Eif4e1b protein_coding nonsense_mediated_decay MGP_AJ_T0037059.1 MGP_AJ_G0020534.1 mouse_genomes_project 13 52211039 52215368 + MGP_AJ_P0037059 Eif4e1b protein_coding protein_coding MGP_AJ_T0037060.1 MGP_AJ_G0020534.1 mouse_genomes_project 13 52211039 52214415 + MGP_AJ_P0037060 Eif4e1b protein_coding protein_coding MGP_AJ_T0037061.1 MGP_AJ_G0020534.1 mouse_genomes_project 13 52211049 52215360 + MGP_AJ_P0037061 Eif4e1b protein_coding protein_coding MGP_AJ_T0037062.1 MGP_AJ_G0020534.1 mouse_genomes_project 13 52211056 52214507 + MGP_AJ_P0037062 Eif4e1b protein_coding protein_coding MGP_AJ_T0037105.1 MGP_AJ_G0020540.1 mouse_genomes_project 13 52577766 52578353 - MGP_AJ_P0037105 Gm17617 protein_coding protein_coding MGP_AJ_T0036516.1 MGP_AJ_G0020331.1 mouse_genomes_project 13 21917315 21927994 + MGP_AJ_P0036516 Tdp2 protein_coding protein_coding MGP_AJ_T0036517.1 MGP_AJ_G0020331.1 mouse_genomes_project 13 21917458 21924010 + Tdp2 protein_coding processed_transcript MGP_AJ_T0017355.1 MGP_AJ_G0015228.1 mouse_genomes_project 13 31797120 31810963 + Gm15908 processed_transcript processed_transcript MGP_AJ_T0009917.1 MGP_AJ_G0008039.1 mouse_genomes_project 13 18300605 18300686 + Mir1896 miRNA miRNA MGP_AJ_T0037891.1 MGP_AJ_G0020823.1 mouse_genomes_project 13 96595315 96603934 - MGP_AJ_P0037891 Tmem171 protein_coding protein_coding MGP_AJ_T0037892.1 MGP_AJ_G0020823.1 mouse_genomes_project 13 96601416 96603868 - MGP_AJ_P0037892 Tmem171 protein_coding protein_coding MGP_AJ_T0012929.1 MGP_AJ_G0011024.1 mouse_genomes_project 13 42359697 42360700 - processed_pseudogene processed_pseudogene MGP_AJ_T0003463.1 MGP_AJ_G0003169.1 mouse_genomes_project 13 61941292 61960737 + 1810034E14Rik antisense antisense MGP_AJ_T0003464.1 MGP_AJ_G0003169.1 mouse_genomes_project 13 61941364 61959059 + 1810034E14Rik antisense antisense MGP_AJ_T0003465.1 MGP_AJ_G0003169.1 mouse_genomes_project 13 61959061 61960737 + 1810034E14Rik antisense antisense MGP_AJ_T0002485.1 MGP_AJ_G0002394.1 mouse_genomes_project 13 16149230 16167414 + MGP_AJ_P0002485 Tcrg-C3 TR_C_gene TR_C_gene MGP_AJ_T0036422.1 MGP_AJ_G0020285.1 mouse_genomes_project 13 19795189 19796110 - MGP_AJ_P0036422 Vmn1r210 protein_coding protein_coding MGP_AJ_T0102313.1 MGP_AJ_G0040055.1 mouse_genomes_project 13 24410644 24413690 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0006592.1 MGP_AJ_G0005456.1 mouse_genomes_project 13 53293103 53293839 - Gm28760 lincRNA lincRNA MGP_AJ_T0006593.1 MGP_AJ_G0005456.1 mouse_genomes_project 13 53293103 53293836 - Gm28760 lincRNA lincRNA MGP_AJ_T0036183.1 MGP_AJ_G0020175.1 mouse_genomes_project 13 5502754 5509703 + MGP_AJ_P0036183 Idi1 protein_coding protein_coding MGP_AJ_T0036184.1 MGP_AJ_G0020175.1 mouse_genomes_project 13 5503196 5507810 + MGP_AJ_P0036184 Idi1 protein_coding protein_coding MGP_AJ_T0036185.1 MGP_AJ_G0020175.1 mouse_genomes_project 13 5503246 5508610 + MGP_AJ_P0036185 Idi1 protein_coding protein_coding MGP_AJ_T0036186.1 MGP_AJ_G0020175.1 mouse_genomes_project 13 5503247 5507852 + MGP_AJ_P0036186 Idi1 protein_coding protein_coding MGP_AJ_T0036187.1 MGP_AJ_G0020175.1 mouse_genomes_project 13 5504322 5507697 + Idi1 protein_coding retained_intron MGP_AJ_T0003429.1 MGP_AJ_G0003144.1 mouse_genomes_project 13 18624537 18625881 + Gm11274 antisense antisense MGP_AJ_T0037020.1 MGP_AJ_G0020528.1 mouse_genomes_project 13 52017406 52036350 - MGP_AJ_P0037020 Cltb protein_coding protein_coding MGP_AJ_T0037021.1 MGP_AJ_G0020528.1 mouse_genomes_project 13 52018543 52024167 - MGP_AJ_P0037021 Cltb protein_coding protein_coding MGP_AJ_T0037022.1 MGP_AJ_G0020528.1 mouse_genomes_project 13 52018590 52036298 - MGP_AJ_P0037022 Cltb protein_coding protein_coding MGP_AJ_T0037023.1 MGP_AJ_G0020528.1 mouse_genomes_project 13 52021045 52036298 - Cltb protein_coding retained_intron MGP_AJ_T0037836.1 MGP_AJ_G0020804.1 mouse_genomes_project 13 94326117 94388965 - MGP_AJ_P0037836 Polk protein_coding protein_coding MGP_AJ_T0037837.1 MGP_AJ_G0020804.1 mouse_genomes_project 13 94327605 94364318 - MGP_AJ_P0037837 Polk protein_coding protein_coding MGP_AJ_T0012917.1 MGP_AJ_G0011012.1 mouse_genomes_project 13 27541017 27541335 - processed_pseudogene processed_pseudogene MGP_AJ_T0006651.1 MGP_AJ_G0005499.1 mouse_genomes_project 13 109965108 109978227 + Gm15323 lincRNA lincRNA MGP_AJ_T0003504.1 MGP_AJ_G0003189.1 mouse_genomes_project 13 102644475 102654543 + 2610204G07Rik antisense antisense MGP_AJ_T0009937.1 MGP_AJ_G0008059.1 mouse_genomes_project 13 52931744 52931840 - Mir6944 miRNA miRNA MGP_AJ_T0098398.1 MGP_AJ_G0036382.1 mouse_genomes_project 13 25999542 25999782 + pseudogene pseudogene MGP_AJ_T0036319.1 MGP_AJ_G0020221.1 mouse_genomes_project 13 16984768 17166573 + Elmo1 protein_coding retained_intron MGP_AJ_T0036320.1 MGP_AJ_G0020221.1 mouse_genomes_project 13 16984791 17504361 + MGP_AJ_P0036320 Elmo1 protein_coding protein_coding MGP_AJ_T0036321.1 MGP_AJ_G0020221.1 mouse_genomes_project 13 17005769 17246991 + Elmo1 protein_coding retained_intron MGP_AJ_T0036322.1 MGP_AJ_G0020221.1 mouse_genomes_project 13 17377067 17490516 + Elmo1 protein_coding retained_intron MGP_AJ_T0102316.1 MGP_AJ_G0040058.1 mouse_genomes_project 13 30159779 30159937 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0012909.1 MGP_AJ_G0011004.1 mouse_genomes_project 13 23868002 23868424 - processed_pseudogene processed_pseudogene MGP_AJ_T0036900.1 MGP_AJ_G0020488.1 mouse_genomes_project 13 46594666 46640298 + MGP_AJ_P0036900 Bicd2 protein_coding protein_coding MGP_AJ_T0036901.1 MGP_AJ_G0020488.1 mouse_genomes_project 13 46594666 46640298 + MGP_AJ_P0036901 Bicd2 protein_coding protein_coding MGP_AJ_T0036902.1 MGP_AJ_G0020488.1 mouse_genomes_project 13 46594666 46640298 + MGP_AJ_P0036902 Bicd2 protein_coding protein_coding MGP_AJ_T0037373.1 MGP_AJ_G0020633.1 mouse_genomes_project 13 62120322 62127789 + MGP_AJ_P0037373 Cdk20 protein_coding protein_coding MGP_AJ_T0037888.1 MGP_AJ_G0020820.1 mouse_genomes_project 13 96243439 96245901 + MGP_AJ_P0037888 Foxd1 protein_coding protein_coding MGP_AJ_T0036462.1 MGP_AJ_G0020315.1 mouse_genomes_project 13 20815005 20816335 - MGP_AJ_P0036462 protein_coding protein_coding MGP_AJ_T0037116.1 MGP_AJ_G0020547.1 mouse_genomes_project 13 52820014 52834992 + MGP_AJ_P0037116 Rgs14 protein_coding protein_coding MGP_AJ_T0037117.1 MGP_AJ_G0020547.1 mouse_genomes_project 13 52820053 52829747 + MGP_AJ_P0037117 Rgs14 protein_coding nonsense_mediated_decay MGP_AJ_T0037118.1 MGP_AJ_G0020547.1 mouse_genomes_project 13 52829470 52834991 + Rgs14 protein_coding retained_intron MGP_AJ_T0006646.1 MGP_AJ_G0005495.1 mouse_genomes_project 13 109808098 109810385 - Gm15325 lincRNA lincRNA MGP_AJ_T0006562.1 MGP_AJ_G0005437.1 mouse_genomes_project 13 36143775 36149456 + 5033403F01Rik lincRNA lincRNA MGP_AJ_T0099447.1 MGP_AJ_G0037413.1 mouse_genomes_project 13 20708408 20708512 + Gm22452 snRNA snRNA MGP_AJ_T0036740.1 MGP_AJ_G0020431.1 mouse_genomes_project 13 37155228 37438776 - MGP_AJ_P0036740 Ofcc1 protein_coding protein_coding MGP_AJ_T0012877.1 MGP_AJ_G0010972.1 mouse_genomes_project 13 8508923 8509909 + processed_pseudogene processed_pseudogene MGP_AJ_T0036107.1 MGP_AJ_G0020149.1 mouse_genomes_project 13 129618 157617 + MGP_AJ_P0036107 Gdi2 protein_coding protein_coding MGP_AJ_T0038035.1 MGP_AJ_G0020862.1 mouse_genomes_project 13 102803985 102823204 - MGP_AJ_P0038035 Fam159b protein_coding protein_coding MGP_AJ_T0037873.1 MGP_AJ_G0020816.1 mouse_genomes_project 13 96139259 96155506 - MGP_AJ_P0037873 Utp15 protein_coding protein_coding MGP_AJ_T0036936.1 MGP_AJ_G0020501.1 mouse_genomes_project 13 48514482 48566572 + MGP_AJ_P0036936 Spin1 protein_coding protein_coding MGP_AJ_T0102285.1 MGP_AJ_G0040027.1 mouse_genomes_project 13 19222557 19223424 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0036145.1 MGP_AJ_G0020168.1 mouse_genomes_project 13 2465708 2474655 + MGP_AJ_P0036145 Klf6 protein_coding protein_coding MGP_AJ_T0037294.1 MGP_AJ_G0020600.1 mouse_genomes_project 13 57268241 57320092 - MGP_AJ_P0037294 Zcchc6 protein_coding protein_coding MGP_AJ_T0012898.1 MGP_AJ_G0010993.1 mouse_genomes_project 13 20979191 20979556 - processed_pseudogene processed_pseudogene MGP_AJ_T0037838.1 MGP_AJ_G0020805.1 mouse_genomes_project 13 94335942 94336330 + MGP_AJ_P0037838 Gm17622 protein_coding protein_coding MGP_AJ_T0000877.1 MGP_AJ_G0000811.1 mouse_genomes_project 13 37896764 37899402 - TEC TEC MGP_AJ_T0099477.1 MGP_AJ_G0037443.1 mouse_genomes_project 13 113093190 113093297 + Gm25985 snRNA snRNA MGP_AJ_T0006598.1 MGP_AJ_G0005460.1 mouse_genomes_project 13 60947759 60955395 - Gm16907 lincRNA lincRNA MGP_AJ_T0037540.1 MGP_AJ_G0020719.1 mouse_genomes_project 13 72150654 72178790 - MGP_AJ_P0037540 Sdha protein_coding protein_coding MGP_AJ_T0037541.1 MGP_AJ_G0020719.1 mouse_genomes_project 13 72151132 72152655 - Sdha protein_coding retained_intron MGP_AJ_T0037542.1 MGP_AJ_G0020719.1 mouse_genomes_project 13 72155565 72156742 - Sdha protein_coding retained_intron MGP_AJ_T0037543.1 MGP_AJ_G0020719.1 mouse_genomes_project 13 72165766 72178712 - Sdha protein_coding processed_transcript MGP_AJ_T0037544.1 MGP_AJ_G0020719.1 mouse_genomes_project 13 72167299 72168062 - Sdha protein_coding retained_intron MGP_AJ_T0037545.1 MGP_AJ_G0020719.1 mouse_genomes_project 13 72171541 72178749 - Sdha protein_coding retained_intron MGP_AJ_T0037546.1 MGP_AJ_G0020719.1 mouse_genomes_project 13 72173009 72178667 - Sdha protein_coding processed_transcript MGP_AJ_T0037547.1 MGP_AJ_G0020719.1 mouse_genomes_project 13 72173048 72178745 - Sdha protein_coding processed_transcript MGP_AJ_T0038199.1 MGP_AJ_G0020920.1 mouse_genomes_project 13 117481635 117517457 + MGP_AJ_P0038199 Paip1 protein_coding protein_coding MGP_AJ_T0038200.1 MGP_AJ_G0020920.1 mouse_genomes_project 13 117481832 117516558 + MGP_AJ_P0038200 Paip1 protein_coding nonsense_mediated_decay MGP_AJ_T0038201.1 MGP_AJ_G0020920.1 mouse_genomes_project 13 117481846 117516444 + MGP_AJ_P0038201 Paip1 protein_coding protein_coding MGP_AJ_T0038202.1 MGP_AJ_G0020920.1 mouse_genomes_project 13 117481846 117516596 + MGP_AJ_P0038202 Paip1 protein_coding protein_coding MGP_AJ_T0038203.1 MGP_AJ_G0020920.1 mouse_genomes_project 13 117481846 117519562 + MGP_AJ_P0038203 Paip1 protein_coding protein_coding MGP_AJ_T0038204.1 MGP_AJ_G0020920.1 mouse_genomes_project 13 117481871 117508204 + MGP_AJ_P0038204 Paip1 protein_coding protein_coding MGP_AJ_T0038205.1 MGP_AJ_G0020920.1 mouse_genomes_project 13 117493534 117516261 + MGP_AJ_P0038205 Paip1 protein_coding protein_coding MGP_AJ_T0038206.1 MGP_AJ_G0020920.1 mouse_genomes_project 13 117507693 117510161 + Paip1 protein_coding retained_intron MGP_AJ_T0012895.1 MGP_AJ_G0010990.1 mouse_genomes_project 13 20080318 20080782 + processed_pseudogene processed_pseudogene MGP_AJ_T0036477.1 MGP_AJ_G0020324.1 mouse_genomes_project 13 21009841 21048232 - MGP_AJ_P0036477 Scgn protein_coding protein_coding MGP_AJ_T0036478.1 MGP_AJ_G0020324.1 mouse_genomes_project 13 21018566 21023706 - Scgn protein_coding processed_transcript MGP_AJ_T0006529.1 MGP_AJ_G0005414.1 mouse_genomes_project 13 23023121 23033500 - Gm11351 lincRNA lincRNA MGP_AJ_T0036666.1 MGP_AJ_G0020403.1 mouse_genomes_project 13 31330122 31338100 + MGP_AJ_P0036666 Psmg4 protein_coding protein_coding MGP_AJ_T0036667.1 MGP_AJ_G0020403.1 mouse_genomes_project 13 31330122 31338104 + MGP_AJ_P0036667 Psmg4 protein_coding protein_coding MGP_AJ_T0009920.1 MGP_AJ_G0008042.1 mouse_genomes_project 13 18793193 18793282 - Gm44456 miRNA miRNA MGP_AJ_T0037778.1 MGP_AJ_G0020782.1 mouse_genomes_project 13 91499570 91578617 + MGP_AJ_P0037778 Dmgdh protein_coding protein_coding MGP_AJ_T0037779.1 MGP_AJ_G0020782.1 mouse_genomes_project 13 91537440 91538825 + Dmgdh protein_coding processed_transcript MGP_AJ_T0012954.1 MGP_AJ_G0011049.1 mouse_genomes_project 13 82607242 82607973 - processed_pseudogene processed_pseudogene MGP_AJ_T0036762.1 MGP_AJ_G0020441.1 mouse_genomes_project 13 38411678 38435942 + MGP_AJ_P0036762 Smim13 protein_coding protein_coding MGP_AJ_T0037126.1 MGP_AJ_G0020552.1 mouse_genomes_project 13 52918322 52927220 + MGP_AJ_P0037126 Prr7 protein_coding protein_coding MGP_AJ_T0036189.1 MGP_AJ_G0020177.1 mouse_genomes_project 13 5568335 5574851 + MGP_AJ_P0036189 protein_coding protein_coding MGP_AJ_T0036190.1 MGP_AJ_G0020177.1 mouse_genomes_project 13 5572202 5574721 + MGP_AJ_P0036190 protein_coding protein_coding MGP_AJ_T0037415.1 MGP_AJ_G0020655.1 mouse_genomes_project 13 64854603 64871440 + MGP_AJ_P0037415 Zfp455 protein_coding protein_coding MGP_AJ_T0037416.1 MGP_AJ_G0020655.1 mouse_genomes_project 13 64854632 64871440 + MGP_AJ_P0037416 Zfp455 protein_coding protein_coding MGP_AJ_T0037204.1 MGP_AJ_G0020579.1 mouse_genomes_project 13 54895243 55386911 - MGP_AJ_P0037204 Spock1 protein_coding protein_coding MGP_AJ_T0037205.1 MGP_AJ_G0020579.1 mouse_genomes_project 13 54895255 55386872 - MGP_AJ_P0037205 Spock1 protein_coding protein_coding MGP_AJ_T0037206.1 MGP_AJ_G0020579.1 mouse_genomes_project 13 54900142 55386872 - MGP_AJ_P0037206 Spock1 protein_coding protein_coding MGP_AJ_T0037207.1 MGP_AJ_G0020579.1 mouse_genomes_project 13 54902746 55386888 - MGP_AJ_P0037207 Spock1 protein_coding protein_coding MGP_AJ_T0037208.1 MGP_AJ_G0020579.1 mouse_genomes_project 13 54903331 55386184 - MGP_AJ_P0037208 Spock1 protein_coding protein_coding MGP_AJ_T0037209.1 MGP_AJ_G0020579.1 mouse_genomes_project 13 54908451 55386896 - Spock1 protein_coding retained_intron MGP_AJ_T0038210.1 MGP_AJ_G0020924.1 mouse_genomes_project 13 117666188 117670157 + MGP_AJ_P0038210 protein_coding protein_coding MGP_AJ_T0037709.1 MGP_AJ_G0020761.1 mouse_genomes_project 13 89303383 89544144 + Ssbp2 protein_coding processed_transcript MGP_AJ_T0037710.1 MGP_AJ_G0020761.1 mouse_genomes_project 13 89304146 89558742 + MGP_AJ_P0037710 Ssbp2 protein_coding protein_coding MGP_AJ_T0037711.1 MGP_AJ_G0020761.1 mouse_genomes_project 13 89304187 89556542 + MGP_AJ_P0037711 Ssbp2 protein_coding protein_coding MGP_AJ_T0037712.1 MGP_AJ_G0020761.1 mouse_genomes_project 13 89304223 89390145 + MGP_AJ_P0037712 Ssbp2 protein_coding nonsense_mediated_decay MGP_AJ_T0037713.1 MGP_AJ_G0020761.1 mouse_genomes_project 13 89304256 89528687 + Ssbp2 protein_coding retained_intron MGP_AJ_T0037714.1 MGP_AJ_G0020761.1 mouse_genomes_project 13 89304259 89414569 + Ssbp2 protein_coding retained_intron MGP_AJ_T0037715.1 MGP_AJ_G0020761.1 mouse_genomes_project 13 89304277 89375426 + Ssbp2 protein_coding retained_intron MGP_AJ_T0037716.1 MGP_AJ_G0020761.1 mouse_genomes_project 13 89526715 89546751 + Ssbp2 protein_coding retained_intron MGP_AJ_T0003495.1 MGP_AJ_G0003185.1 mouse_genomes_project 13 96209259 96210142 + Gm9828 antisense antisense MGP_AJ_T0003496.1 MGP_AJ_G0003185.1 mouse_genomes_project 13 96209906 96214869 + Gm9828 antisense antisense MGP_AJ_T0003497.1 MGP_AJ_G0003185.1 mouse_genomes_project 13 96209953 96217741 + Gm9828 antisense antisense MGP_AJ_T0003498.1 MGP_AJ_G0003185.1 mouse_genomes_project 13 96211541 96214375 + Gm9828 antisense antisense MGP_AJ_T0036139.1 MGP_AJ_G0020165.1 mouse_genomes_project 13 1150740 1166968 + MGP_AJ_P0036139 Akr1c21 protein_coding protein_coding MGP_AJ_T0036140.1 MGP_AJ_G0020165.1 mouse_genomes_project 13 1153822 1158176 + Akr1c21 protein_coding retained_intron MGP_AJ_T0036390.1 MGP_AJ_G0020262.1 mouse_genomes_project 13 18813347 18832233 + MGP_AJ_P0036390 Zfp184 protein_coding protein_coding MGP_AJ_T0036391.1 MGP_AJ_G0020262.1 mouse_genomes_project 13 18813365 18832516 + MGP_AJ_P0036391 Zfp184 protein_coding protein_coding MGP_AJ_T0036392.1 MGP_AJ_G0020262.1 mouse_genomes_project 13 18813365 18832351 + MGP_AJ_P0036392 Zfp184 protein_coding nonsense_mediated_decay MGP_AJ_T0036393.1 MGP_AJ_G0020262.1 mouse_genomes_project 13 18813390 18818583 + MGP_AJ_P0036393 Zfp184 protein_coding protein_coding MGP_AJ_T0036394.1 MGP_AJ_G0020262.1 mouse_genomes_project 13 18814046 18832087 + MGP_AJ_P0036394 Zfp184 protein_coding protein_coding MGP_AJ_T0036395.1 MGP_AJ_G0020262.1 mouse_genomes_project 13 18817647 18830459 + Zfp184 protein_coding retained_intron MGP_AJ_T0012945.1 MGP_AJ_G0011040.1 mouse_genomes_project 13 71844675 71846017 - processed_pseudogene processed_pseudogene MGP_AJ_T0000885.1 MGP_AJ_G0000819.1 mouse_genomes_project 13 77179446 77179908 - TEC TEC MGP_AJ_T0036355.1 MGP_AJ_G0020236.1 mouse_genomes_project 13 18381836 18399760 - MGP_AJ_P0036355 Zkscan8 protein_coding protein_coding MGP_AJ_T0036356.1 MGP_AJ_G0020236.1 mouse_genomes_project 13 18390445 18399672 - MGP_AJ_P0036356 Zkscan8 protein_coding protein_coding MGP_AJ_T0036357.1 MGP_AJ_G0020236.1 mouse_genomes_project 13 18395063 18399713 - MGP_AJ_P0036357 Zkscan8 protein_coding protein_coding MGP_AJ_T0099464.1 MGP_AJ_G0037430.1 mouse_genomes_project 13 60455992 60456099 + Gm25448 snRNA snRNA MGP_AJ_T0012924.1 MGP_AJ_G0011019.1 mouse_genomes_project 13 30904543 30904858 - processed_pseudogene processed_pseudogene MGP_AJ_T0036304.1 MGP_AJ_G0020215.1 mouse_genomes_project 13 16274853 16284942 - Stard3nl protein_coding retained_intron MGP_AJ_T0036305.1 MGP_AJ_G0020215.1 mouse_genomes_project 13 16274856 16276304 - Stard3nl protein_coding retained_intron MGP_AJ_T0036306.1 MGP_AJ_G0020215.1 mouse_genomes_project 13 16274856 16312863 - MGP_AJ_P0036306 Stard3nl protein_coding protein_coding MGP_AJ_T0036307.1 MGP_AJ_G0020215.1 mouse_genomes_project 13 16275179 16287347 - Stard3nl protein_coding retained_intron MGP_AJ_T0036308.1 MGP_AJ_G0020215.1 mouse_genomes_project 13 16281941 16312850 - MGP_AJ_P0036308 Stard3nl protein_coding protein_coding MGP_AJ_T0036309.1 MGP_AJ_G0020215.1 mouse_genomes_project 13 16286385 16312911 - Stard3nl protein_coding retained_intron MGP_AJ_T0036310.1 MGP_AJ_G0020215.1 mouse_genomes_project 13 16287302 16293649 - Stard3nl protein_coding retained_intron MGP_AJ_T0036311.1 MGP_AJ_G0020215.1 mouse_genomes_project 13 16293575 16312875 - MGP_AJ_P0036311 Stard3nl protein_coding protein_coding MGP_AJ_T0037452.1 MGP_AJ_G0020677.1 mouse_genomes_project 13 65520423 65530213 - MGP_AJ_P0037452 protein_coding protein_coding MGP_AJ_T0003441.1 MGP_AJ_G0003154.1 mouse_genomes_project 13 28931764 28934806 + Gm11379 antisense antisense MGP_AJ_T0037554.1 MGP_AJ_G0020722.1 mouse_genomes_project 13 72200918 72220415 - MGP_AJ_P0037554 Zfp72 protein_coding protein_coding MGP_AJ_T0098580.1 MGP_AJ_G0036564.1 mouse_genomes_project 13 114684192 114684283 + Gm23198 rRNA rRNA MGP_AJ_T0037109.1 MGP_AJ_G0020542.1 mouse_genomes_project 13 52658557 52762224 + MGP_AJ_P0037109 Nsd1 protein_coding unknown_likely_coding MGP_AJ_T0099446.1 MGP_AJ_G0037412.1 mouse_genomes_project 13 18341936 18342000 - Gm23779 snRNA snRNA MGP_AJ_T0099472.1 MGP_AJ_G0037438.1 mouse_genomes_project 13 98543718 98543822 + Gm24261 snRNA snRNA MGP_AJ_T0038051.1 MGP_AJ_G0020869.1 mouse_genomes_project 13 104904390 104967918 - MGP_AJ_P0038051 Kif2a protein_coding protein_coding MGP_AJ_T0038052.1 MGP_AJ_G0020869.1 mouse_genomes_project 13 104906654 104967914 - MGP_AJ_P0038052 Kif2a protein_coding protein_coding MGP_AJ_T0038053.1 MGP_AJ_G0020869.1 mouse_genomes_project 13 104907246 104967926 - MGP_AJ_P0038053 Kif2a protein_coding protein_coding MGP_AJ_T0038054.1 MGP_AJ_G0020869.1 mouse_genomes_project 13 104907515 104942654 - MGP_AJ_P0038054 Kif2a protein_coding protein_coding MGP_AJ_T0038055.1 MGP_AJ_G0020869.1 mouse_genomes_project 13 104909149 104967827 - MGP_AJ_P0038055 Kif2a protein_coding protein_coding MGP_AJ_T0038056.1 MGP_AJ_G0020869.1 mouse_genomes_project 13 104914569 104923007 - MGP_AJ_P0038056 Kif2a protein_coding nonsense_mediated_decay MGP_AJ_T0038057.1 MGP_AJ_G0020869.1 mouse_genomes_project 13 104925620 104967549 - MGP_AJ_P0038057 Kif2a protein_coding nonsense_mediated_decay MGP_AJ_T0038058.1 MGP_AJ_G0020869.1 mouse_genomes_project 13 104933223 104939818 - MGP_AJ_P0038058 Kif2a protein_coding protein_coding MGP_AJ_T0036622.1 MGP_AJ_G0020385.1 mouse_genomes_project 13 30118440 30132299 + MGP_AJ_P0036622 Serpinb6b protein_coding protein_coding MGP_AJ_T0036623.1 MGP_AJ_G0020385.1 mouse_genomes_project 13 30118675 30132294 + MGP_AJ_P0036623 Serpinb6b protein_coding nonsense_mediated_decay MGP_AJ_T0036624.1 MGP_AJ_G0020385.1 mouse_genomes_project 13 30118734 30132294 + Serpinb6b protein_coding processed_transcript MGP_AJ_T0102290.1 MGP_AJ_G0040032.1 mouse_genomes_project 13 19420950 19421531 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0011347.1 MGP_AJ_G0009469.1 mouse_genomes_project 13 10689631 10689921 + Gm25271 misc_RNA misc_RNA MGP_AJ_T0038026.1 MGP_AJ_G0020860.1 mouse_genomes_project 13 102589813 102774079 - MGP_AJ_P0038026 Cwc27 protein_coding protein_coding MGP_AJ_T0038027.1 MGP_AJ_G0020860.1 mouse_genomes_project 13 102706149 102749553 - Cwc27 protein_coding processed_transcript MGP_AJ_T0038028.1 MGP_AJ_G0020860.1 mouse_genomes_project 13 102747337 102749588 - Cwc27 protein_coding processed_transcript MGP_AJ_T0038030.1 MGP_AJ_G0020860.1 mouse_genomes_project 13 102764644 102774268 - MGP_AJ_P0038030 Cwc27 protein_coding protein_coding MGP_AJ_T0038164.1 MGP_AJ_G0020906.1 mouse_genomes_project 13 112461146 112467611 - MGP_AJ_P0038164 Fst protein_coding protein_coding MGP_AJ_T0038165.1 MGP_AJ_G0020906.1 mouse_genomes_project 13 112462306 112467467 - MGP_AJ_P0038165 Fst protein_coding unknown_likely_coding MGP_AJ_T0037872.1 MGP_AJ_G0020815.1 mouse_genomes_project 13 95797504 96098713 - MGP_AJ_P0037872 Arhgef28 protein_coding protein_coding MGP_AJ_T0009909.1 MGP_AJ_G0008031.1 mouse_genomes_project 13 548255 548379 - Gm22460 miRNA miRNA MGP_AJ_T0000894.1 MGP_AJ_G0000828.1 mouse_genomes_project 13 97548570 97549400 + TEC TEC MGP_AJ_T0036684.1 MGP_AJ_G0020411.1 mouse_genomes_project 13 32102679 32152953 - MGP_AJ_P0036684 Eci2 protein_coding protein_coding MGP_AJ_T0036685.1 MGP_AJ_G0020411.1 mouse_genomes_project 13 32132393 32153635 - MGP_AJ_P0036685 Eci2 protein_coding protein_coding MGP_AJ_T0036686.1 MGP_AJ_G0020411.1 mouse_genomes_project 13 32132394 32153618 - MGP_AJ_P0036686 Eci2 protein_coding protein_coding MGP_AJ_T0036687.1 MGP_AJ_G0020411.1 mouse_genomes_project 13 32132395 32153635 - MGP_AJ_P0036687 Eci2 protein_coding protein_coding MGP_AJ_T0036688.1 MGP_AJ_G0020411.1 mouse_genomes_project 13 32132402 32153623 - MGP_AJ_P0036688 Eci2 protein_coding protein_coding MGP_AJ_T0036689.1 MGP_AJ_G0020411.1 mouse_genomes_project 13 32133347 32143049 - Eci2 protein_coding processed_transcript MGP_AJ_T0036690.1 MGP_AJ_G0020411.1 mouse_genomes_project 13 32134901 32143792 - Eci2 protein_coding processed_transcript MGP_AJ_T0036691.1 MGP_AJ_G0020411.1 mouse_genomes_project 13 32140122 32142583 - Eci2 protein_coding retained_intron MGP_AJ_T0036692.1 MGP_AJ_G0020411.1 mouse_genomes_project 13 32140374 32153614 - MGP_AJ_P0036692 Eci2 protein_coding protein_coding MGP_AJ_T0036693.1 MGP_AJ_G0020411.1 mouse_genomes_project 13 32141751 32153613 - MGP_AJ_P0036693 Eci2 protein_coding protein_coding MGP_AJ_T0036290.1 MGP_AJ_G0020210.1 mouse_genomes_project 13 14763425 14814265 - MGP_AJ_P0036290 Rala protein_coding protein_coding MGP_AJ_T0037883.1 MGP_AJ_G0020819.1 mouse_genomes_project 13 96202716 96209805 - MGP_AJ_P0037883 Btf3 protein_coding protein_coding MGP_AJ_T0037884.1 MGP_AJ_G0020819.1 mouse_genomes_project 13 96202717 96209844 - MGP_AJ_P0037884 Btf3 protein_coding protein_coding MGP_AJ_T0037885.1 MGP_AJ_G0020819.1 mouse_genomes_project 13 96202718 96204336 - Btf3 protein_coding retained_intron MGP_AJ_T0037886.1 MGP_AJ_G0020819.1 mouse_genomes_project 13 96202762 96209214 - MGP_AJ_P0037886 Btf3 protein_coding protein_coding MGP_AJ_T0037887.1 MGP_AJ_G0020819.1 mouse_genomes_project 13 96205859 96209834 - Btf3 protein_coding retained_intron MGP_AJ_T0011363.1 MGP_AJ_G0009485.1 mouse_genomes_project 13 106449979 106450174 - Gm28016 misc_RNA misc_RNA MGP_AJ_T0038010.1 MGP_AJ_G0020854.1 mouse_genomes_project 13 102062625 102085082 + MGP_AJ_P0038010 Sgtb protein_coding protein_coding MGP_AJ_T0038011.1 MGP_AJ_G0020854.1 mouse_genomes_project 13 102062670 102094919 + MGP_AJ_P0038011 Sgtb protein_coding protein_coding MGP_AJ_T0038116.1 MGP_AJ_G0020884.1 mouse_genomes_project 13 109703323 109771378 - MGP_AJ_P0038116 Map3k1 protein_coding protein_coding MGP_AJ_T0038117.1 MGP_AJ_G0020884.1 mouse_genomes_project 13 109705590 109708154 - Map3k1 protein_coding retained_intron MGP_AJ_T0038118.1 MGP_AJ_G0020884.1 mouse_genomes_project 13 109710505 109711641 - Map3k1 protein_coding retained_intron MGP_AJ_T0038119.1 MGP_AJ_G0020884.1 mouse_genomes_project 13 109724724 109725667 - Map3k1 protein_coding processed_transcript MGP_AJ_T0038120.1 MGP_AJ_G0020884.1 mouse_genomes_project 13 109725097 109765609 - MGP_AJ_P0038120 Map3k1 protein_coding protein_coding MGP_AJ_T0037731.1 MGP_AJ_G0020766.1 mouse_genomes_project 13 90052377 90194776 - MGP_AJ_P0037731 Msh3 protein_coding protein_coding MGP_AJ_T0037732.1 MGP_AJ_G0020766.1 mouse_genomes_project 13 90052385 90080965 - Msh3 protein_coding processed_transcript MGP_AJ_T0037733.1 MGP_AJ_G0020766.1 mouse_genomes_project 13 90052386 90107182 - Msh3 protein_coding retained_intron MGP_AJ_T0037734.1 MGP_AJ_G0020766.1 mouse_genomes_project 13 90052387 90194780 - MGP_AJ_P0037734 Msh3 protein_coding nonsense_mediated_decay MGP_AJ_T0037735.1 MGP_AJ_G0020766.1 mouse_genomes_project 13 90052391 90090135 - Msh3 protein_coding retained_intron MGP_AJ_T0037736.1 MGP_AJ_G0020766.1 mouse_genomes_project 13 90052391 90194784 - MGP_AJ_P0037736 Msh3 protein_coding protein_coding MGP_AJ_T0037737.1 MGP_AJ_G0020766.1 mouse_genomes_project 13 90052762 90075433 - MGP_AJ_P0037737 Msh3 protein_coding protein_coding MGP_AJ_T0037738.1 MGP_AJ_G0020766.1 mouse_genomes_project 13 90089915 90194766 - MGP_AJ_P0037738 Msh3 protein_coding nonsense_mediated_decay MGP_AJ_T0037740.1 MGP_AJ_G0020766.1 mouse_genomes_project 13 90144337 90146298 - Msh3 protein_coding retained_intron MGP_AJ_T0037741.1 MGP_AJ_G0020766.1 mouse_genomes_project 13 90146020 90194777 - MGP_AJ_P0037741 Msh3 protein_coding nonsense_mediated_decay MGP_AJ_T0037742.1 MGP_AJ_G0020766.1 mouse_genomes_project 13 90149492 90185308 - Msh3 protein_coding retained_intron MGP_AJ_T0037743.1 MGP_AJ_G0020766.1 mouse_genomes_project 13 90180601 90194295 - Msh3 protein_coding processed_transcript MGP_AJ_T0037744.1 MGP_AJ_G0020766.1 mouse_genomes_project 13 90185798 90194734 - Msh3 protein_coding retained_intron MGP_AJ_T0037745.1 MGP_AJ_G0020766.1 mouse_genomes_project 13 90190883 90194766 - MGP_AJ_P0037745 Msh3 protein_coding protein_coding MGP_AJ_T0037942.1 MGP_AJ_G0020838.1 mouse_genomes_project 13 98436687 98493745 - MGP_AJ_P0037942 Ocln protein_coding protein_coding MGP_AJ_T0037943.1 MGP_AJ_G0020838.1 mouse_genomes_project 13 98452467 98493616 - MGP_AJ_P0037943 Ocln protein_coding protein_coding MGP_AJ_T0006564.1 MGP_AJ_G0005439.1 mouse_genomes_project 13 39217981 39218909 + Gm28707 lincRNA lincRNA MGP_AJ_T0012941.1 MGP_AJ_G0011036.1 mouse_genomes_project 13 67109273 67110269 + processed_pseudogene processed_pseudogene MGP_AJ_T0038177.1 MGP_AJ_G0020909.1 mouse_genomes_project 13 112925708 113076535 - MGP_AJ_P0038177 Itga1 protein_coding protein_coding MGP_AJ_T0098577.1 MGP_AJ_G0036561.1 mouse_genomes_project 13 94751798 94751913 + Gm27792 rRNA rRNA MGP_AJ_T0036473.1 MGP_AJ_G0020321.1 mouse_genomes_project 13 20952649 20969915 - MGP_AJ_P0036473 Slc17a4 protein_coding protein_coding MGP_AJ_T0036474.1 MGP_AJ_G0020321.1 mouse_genomes_project 13 20952800 20969917 - MGP_AJ_P0036474 Slc17a4 protein_coding protein_coding MGP_AJ_T0036564.1 MGP_AJ_G0020356.1 mouse_genomes_project 13 24790886 24798598 - MGP_AJ_P0036564 Prl7d1 protein_coding protein_coding MGP_AJ_T0036565.1 MGP_AJ_G0020356.1 mouse_genomes_project 13 24798267 24798586 - Prl7d1 protein_coding processed_transcript MGP_AJ_T0037184.1 MGP_AJ_G0020574.1 mouse_genomes_project 13 53992320 53997310 + MGP_AJ_P0037184 Fbxl21 protein_coding protein_coding MGP_AJ_T0037185.1 MGP_AJ_G0020574.1 mouse_genomes_project 13 53992339 54007739 + MGP_AJ_P0037185 Fbxl21 protein_coding protein_coding MGP_AJ_T0037186.1 MGP_AJ_G0020574.1 mouse_genomes_project 13 53992356 54007627 + MGP_AJ_P0037186 Fbxl21 protein_coding protein_coding MGP_AJ_T0037187.1 MGP_AJ_G0020574.1 mouse_genomes_project 13 53992361 53999939 + MGP_AJ_P0037187 Fbxl21 protein_coding nonsense_mediated_decay MGP_AJ_T0037555.1 MGP_AJ_G0020723.1 mouse_genomes_project 13 72556665 72617226 + MGP_AJ_P0037555 Erap1 protein_coding protein_coding MGP_AJ_T0037497.1 MGP_AJ_G0020700.1 mouse_genomes_project 13 71147987 71149154 + MGP_AJ_P0037497 Mrpl36 protein_coding protein_coding MGP_AJ_T0012893.1 MGP_AJ_G0010988.1 mouse_genomes_project 13 19615882 19617192 + processed_pseudogene processed_pseudogene MGP_AJ_T0009932.1 MGP_AJ_G0008054.1 mouse_genomes_project 13 45781369 45781458 - Mirlet7f-1 miRNA miRNA MGP_AJ_T0099462.1 MGP_AJ_G0037428.1 mouse_genomes_project 13 53811084 53811188 - Gm24716 snRNA snRNA MGP_AJ_T0037374.1 MGP_AJ_G0020634.1 mouse_genomes_project 13 62178752 62196996 - MGP_AJ_P0037374 1190003K10Rik protein_coding protein_coding MGP_AJ_T0012889.1 MGP_AJ_G0010984.1 mouse_genomes_project 13 18828455 18829871 - processed_pseudogene processed_pseudogene MGP_AJ_T0037478.1 MGP_AJ_G0020690.1 mouse_genomes_project 13 67484829 67521668 - MGP_AJ_P0037478 Ube2ql1 protein_coding protein_coding MGP_AJ_T0036921.1 MGP_AJ_G0020498.1 mouse_genomes_project 13 47210367 47210607 - MGP_AJ_P0036921 protein_coding protein_coding MGP_AJ_T0100738.1 MGP_AJ_G0038704.1 mouse_genomes_project 13 73706290 73706420 + Gm23127 snoRNA snoRNA MGP_AJ_T0006635.1 MGP_AJ_G0005485.1 mouse_genomes_project 13 96982755 96992834 - 2310020H05Rik lincRNA lincRNA MGP_AJ_T0002500.1 MGP_AJ_G0002406.1 mouse_genomes_project 13 16258799 16258860 + MGP_AJ_P0002500 Trgj4 TR_J_gene TR_J_gene MGP_AJ_T0003490.1 MGP_AJ_G0003181.1 mouse_genomes_project 13 90254357 90266625 - C030017D09Rik antisense antisense MGP_AJ_T0003427.1 MGP_AJ_G0003142.1 mouse_genomes_project 13 12349962 12351278 - Gm26645 antisense antisense MGP_AJ_T0037854.1 MGP_AJ_G0020809.1 mouse_genomes_project 13 94882213 94897763 - MGP_AJ_P0037854 1700029F12Rik protein_coding protein_coding MGP_AJ_T0036541.1 MGP_AJ_G0020343.1 mouse_genomes_project 13 24285378 24292346 + MGP_AJ_P0036541 Prl3c1 protein_coding protein_coding MGP_AJ_T0036542.1 MGP_AJ_G0020343.1 mouse_genomes_project 13 24287499 24292346 + MGP_AJ_P0036542 Prl3c1 protein_coding protein_coding MGP_AJ_T0036543.1 MGP_AJ_G0020343.1 mouse_genomes_project 13 24287949 24292209 + MGP_AJ_P0036543 Prl3c1 protein_coding protein_coding MGP_AJ_T0037304.1 MGP_AJ_G0020608.1 mouse_genomes_project 13 58394870 58398287 - MGP_AJ_P0037304 Tpbpb protein_coding protein_coding MGP_AJ_T0036137.1 MGP_AJ_G0020164.1 mouse_genomes_project 13 1061173 1097854 - MGP_AJ_P0036137 Akr1c20 protein_coding protein_coding MGP_AJ_T0036138.1 MGP_AJ_G0020164.1 mouse_genomes_project 13 1081722 1097869 - MGP_AJ_P0036138 Akr1c20 protein_coding protein_coding MGP_AJ_T0099458.1 MGP_AJ_G0037424.1 mouse_genomes_project 13 41043245 41043353 + Gm23117 snRNA snRNA MGP_AJ_T0036660.1 MGP_AJ_G0020400.1 mouse_genomes_project 13 31163448 31194737 + MGP_AJ_P0036660 Ripk1 protein_coding protein_coding MGP_AJ_T0036661.1 MGP_AJ_G0020400.1 mouse_genomes_project 13 31163485 31175773 + Ripk1 protein_coding retained_intron MGP_AJ_T0036662.1 MGP_AJ_G0020400.1 mouse_genomes_project 13 31163959 31196230 + MGP_AJ_P0036662 Ripk1 protein_coding protein_coding MGP_AJ_T0036663.1 MGP_AJ_G0020400.1 mouse_genomes_project 13 31170784 31193842 + MGP_AJ_P0036663 Ripk1 protein_coding protein_coding MGP_AJ_T0036432.1 MGP_AJ_G0020295.1 mouse_genomes_project 13 20222744 20223671 - MGP_AJ_P0036432 Vmn1r188 protein_coding protein_coding MGP_AJ_T0009948.1 MGP_AJ_G0008070.1 mouse_genomes_project 13 60959466 60959534 + Mir24-1 miRNA miRNA MGP_AJ_T0012875.1 MGP_AJ_G0010970.1 mouse_genomes_project 13 832193 832484 + processed_pseudogene processed_pseudogene MGP_AJ_T0036989.1 MGP_AJ_G0020517.1 mouse_genomes_project 13 50953946 50954303 + MGP_AJ_P0036989 Gm5449 protein_coding protein_coding MGP_AJ_T0006594.1 MGP_AJ_G0005457.1 mouse_genomes_project 13 53686235 53711364 - 4930550C17Rik lincRNA lincRNA MGP_AJ_T0036338.1 MGP_AJ_G0020230.1 mouse_genomes_project 13 18241616 18257302 - MGP_AJ_P0036338 Zkscan3 protein_coding protein_coding MGP_AJ_T0036339.1 MGP_AJ_G0020230.1 mouse_genomes_project 13 18241616 18257344 - MGP_AJ_P0036339 Zkscan3 protein_coding protein_coding MGP_AJ_T0036340.1 MGP_AJ_G0020230.1 mouse_genomes_project 13 18243208 18249357 - MGP_AJ_P0036340 Zkscan3 protein_coding protein_coding MGP_AJ_T0036341.1 MGP_AJ_G0020230.1 mouse_genomes_project 13 18243894 18257284 - MGP_AJ_P0036341 Zkscan3 protein_coding protein_coding MGP_AJ_T0036342.1 MGP_AJ_G0020230.1 mouse_genomes_project 13 18247825 18257305 - MGP_AJ_P0036342 Zkscan3 protein_coding protein_coding MGP_AJ_T0036343.1 MGP_AJ_G0020230.1 mouse_genomes_project 13 18256141 18257259 - Zkscan3 protein_coding processed_transcript MGP_AJ_T0036795.1 MGP_AJ_G0020454.1 mouse_genomes_project 13 40567407 40649008 - MGP_AJ_P0036795 Ranbp9 protein_coding protein_coding MGP_AJ_T0037902.1 MGP_AJ_G0020828.1 mouse_genomes_project 13 97226074 97250780 - MGP_AJ_P0037902 Ptcd2 protein_coding protein_coding MGP_AJ_T0036641.1 MGP_AJ_G0020398.1 mouse_genomes_project 13 31079842 31163880 - MGP_AJ_P0036641 Serpinb6a protein_coding protein_coding MGP_AJ_T0036642.1 MGP_AJ_G0020398.1 mouse_genomes_project 13 31079842 31098994 - MGP_AJ_P0036642 Serpinb6a protein_coding protein_coding MGP_AJ_T0036643.1 MGP_AJ_G0020398.1 mouse_genomes_project 13 31079842 31098879 - MGP_AJ_P0036643 Serpinb6a protein_coding protein_coding MGP_AJ_T0036644.1 MGP_AJ_G0020398.1 mouse_genomes_project 13 31079851 31098792 - MGP_AJ_P0036644 Serpinb6a protein_coding protein_coding MGP_AJ_T0036645.1 MGP_AJ_G0020398.1 mouse_genomes_project 13 31080156 31083985 - Serpinb6a protein_coding processed_transcript MGP_AJ_T0036646.1 MGP_AJ_G0020398.1 mouse_genomes_project 13 31080714 31163880 - MGP_AJ_P0036646 Serpinb6a protein_coding protein_coding MGP_AJ_T0036647.1 MGP_AJ_G0020398.1 mouse_genomes_project 13 31084851 31098671 - MGP_AJ_P0036647 Serpinb6a protein_coding protein_coding MGP_AJ_T0036648.1 MGP_AJ_G0020398.1 mouse_genomes_project 13 31084867 31098751 - MGP_AJ_P0036648 Serpinb6a protein_coding protein_coding MGP_AJ_T0036649.1 MGP_AJ_G0020398.1 mouse_genomes_project 13 31084944 31098644 - MGP_AJ_P0036649 Serpinb6a protein_coding protein_coding MGP_AJ_T0036650.1 MGP_AJ_G0020398.1 mouse_genomes_project 13 31085549 31098774 - Serpinb6a protein_coding retained_intron MGP_AJ_T0036651.1 MGP_AJ_G0020398.1 mouse_genomes_project 13 31087239 31098773 - MGP_AJ_P0036651 Serpinb6a protein_coding protein_coding MGP_AJ_T0036652.1 MGP_AJ_G0020398.1 mouse_genomes_project 13 31087311 31163853 - MGP_AJ_P0036652 Serpinb6a protein_coding protein_coding MGP_AJ_T0036653.1 MGP_AJ_G0020398.1 mouse_genomes_project 13 31092921 31098750 - MGP_AJ_P0036653 Serpinb6a protein_coding protein_coding MGP_AJ_T0036654.1 MGP_AJ_G0020398.1 mouse_genomes_project 13 31092934 31163872 - MGP_AJ_P0036654 Serpinb6a protein_coding protein_coding MGP_AJ_T0036655.1 MGP_AJ_G0020398.1 mouse_genomes_project 13 31094378 31163826 - MGP_AJ_P0036655 Serpinb6a protein_coding protein_coding MGP_AJ_T0036658.1 MGP_AJ_G0020398.1 mouse_genomes_project 13 31131680 31163853 - Serpinb6a protein_coding processed_transcript MGP_AJ_T0036659.1 MGP_AJ_G0020398.1 mouse_genomes_project 13 31147435 31163856 - Serpinb6a protein_coding processed_transcript MGP_AJ_T0099439.1 MGP_AJ_G0037405.1 mouse_genomes_project 13 10128101 10128201 - Gm26133 snRNA snRNA MGP_AJ_T0037907.1 MGP_AJ_G0020832.1 mouse_genomes_project 13 97845923 97913674 - MGP_AJ_P0037907 Mccc2 protein_coding protein_coding MGP_AJ_T0036134.1 MGP_AJ_G0020163.1 mouse_genomes_project 13 1016578 1037334 + MGP_AJ_P0036134 Akr1c6 protein_coding protein_coding MGP_AJ_T0036135.1 MGP_AJ_G0020163.1 mouse_genomes_project 13 1016704 1017319 + Akr1c6 protein_coding processed_transcript MGP_AJ_T0036136.1 MGP_AJ_G0020163.1 mouse_genomes_project 13 1018418 1029098 + MGP_AJ_P0036136 Akr1c6 protein_coding protein_coding MGP_AJ_T0037858.1 MGP_AJ_G0020812.1 mouse_genomes_project 13 95000510 95038740 + MGP_AJ_P0037858 Gfm2 protein_coding protein_coding MGP_AJ_T0037859.1 MGP_AJ_G0020812.1 mouse_genomes_project 13 95000510 95018283 + MGP_AJ_P0037859 Gfm2 protein_coding protein_coding MGP_AJ_T0037860.1 MGP_AJ_G0020812.1 mouse_genomes_project 13 95000550 95036930 + Gfm2 protein_coding retained_intron MGP_AJ_T0037861.1 MGP_AJ_G0020812.1 mouse_genomes_project 13 95000551 95038750 + MGP_AJ_P0037861 Gfm2 protein_coding protein_coding MGP_AJ_T0037862.1 MGP_AJ_G0020812.1 mouse_genomes_project 13 95000558 95030847 + MGP_AJ_P0037862 Gfm2 protein_coding protein_coding MGP_AJ_T0037863.1 MGP_AJ_G0020812.1 mouse_genomes_project 13 95000571 95006863 + Gfm2 protein_coding retained_intron MGP_AJ_T0037864.1 MGP_AJ_G0020812.1 mouse_genomes_project 13 95000575 95043501 + MGP_AJ_P0037864 Gfm2 protein_coding protein_coding MGP_AJ_T0037865.1 MGP_AJ_G0020812.1 mouse_genomes_project 13 95000581 95009103 + MGP_AJ_P0037865 Gfm2 protein_coding protein_coding MGP_AJ_T0037866.1 MGP_AJ_G0020812.1 mouse_genomes_project 13 95000613 95038750 + MGP_AJ_P0037866 Gfm2 protein_coding protein_coding MGP_AJ_T0037867.1 MGP_AJ_G0020812.1 mouse_genomes_project 13 95013156 95025219 + MGP_AJ_P0037867 Gfm2 protein_coding nonsense_mediated_decay MGP_AJ_T0037868.1 MGP_AJ_G0020812.1 mouse_genomes_project 13 95022738 95038750 + Gfm2 protein_coding retained_intron MGP_AJ_T0037869.1 MGP_AJ_G0020812.1 mouse_genomes_project 13 95033749 95039780 + Gfm2 protein_coding retained_intron MGP_AJ_T0006568.1 MGP_AJ_G0005442.1 mouse_genomes_project 13 41612128 41629921 + 1700029N11Rik lincRNA lincRNA MGP_AJ_T0006569.1 MGP_AJ_G0005442.1 mouse_genomes_project 13 41612143 41629924 + 1700029N11Rik lincRNA lincRNA MGP_AJ_T0006590.1 MGP_AJ_G0005454.1 mouse_genomes_project 13 52339798 52341043 + 5330429C05Rik lincRNA lincRNA MGP_AJ_T0036872.1 MGP_AJ_G0020481.1 mouse_genomes_project 13 46049238 46119444 - MGP_AJ_P0036872 Phf2 protein_coding protein_coding MGP_AJ_T0038144.1 MGP_AJ_G0020894.1 mouse_genomes_project 13 110975330 110981716 + MGP_AJ_P0038144 Mcidas protein_coding protein_coding MGP_AJ_T0009968.1 MGP_AJ_G0008090.1 mouse_genomes_project 13 117286104 117286241 - Gm44488 miRNA miRNA MGP_AJ_T0000884.1 MGP_AJ_G0000818.1 mouse_genomes_project 13 68892183 68895427 - TEC TEC MGP_AJ_T0036527.1 MGP_AJ_G0020335.1 mouse_genomes_project 13 22080615 22103361 - MGP_AJ_P0036527 Mrs2 protein_coding protein_coding MGP_AJ_T0006573.1 MGP_AJ_G0005445.1 mouse_genomes_project 13 45282124 45505228 - A330033J07Rik lincRNA lincRNA MGP_AJ_T0006574.1 MGP_AJ_G0005445.1 mouse_genomes_project 13 45481662 45504686 - A330033J07Rik lincRNA lincRNA MGP_AJ_T0012932.1 MGP_AJ_G0011027.1 mouse_genomes_project 13 58283710 58284076 + processed_pseudogene processed_pseudogene MGP_AJ_T0006520.1 MGP_AJ_G0005406.1 mouse_genomes_project 13 6022106 6026698 + Gm26601 lincRNA lincRNA MGP_AJ_T0003470.1 MGP_AJ_G0003172.1 mouse_genomes_project 13 65555791 65596581 - 4930525G20Rik antisense antisense MGP_AJ_T0037422.1 MGP_AJ_G0020660.1 mouse_genomes_project 13 65011485 65032452 - MGP_AJ_P0037422 Zfp953 protein_coding protein_coding MGP_AJ_T0037676.1 MGP_AJ_G0020752.1 mouse_genomes_project 13 86614236 86982522 + MGP_AJ_P0037676 Edil3 protein_coding protein_coding MGP_AJ_T0037677.1 MGP_AJ_G0020752.1 mouse_genomes_project 13 86614252 86921734 + Edil3 protein_coding processed_transcript MGP_AJ_T0037678.1 MGP_AJ_G0020752.1 mouse_genomes_project 13 86614275 87110706 + MGP_AJ_P0037678 Edil3 protein_coding protein_coding MGP_AJ_T0037679.1 MGP_AJ_G0020752.1 mouse_genomes_project 13 86614321 86769432 + Edil3 protein_coding retained_intron MGP_AJ_T0037680.1 MGP_AJ_G0020752.1 mouse_genomes_project 13 86614324 86622910 + Edil3 protein_coding processed_transcript MGP_AJ_T0037681.1 MGP_AJ_G0020752.1 mouse_genomes_project 13 86614378 86833257 + Edil3 protein_coding retained_intron MGP_AJ_T0037682.1 MGP_AJ_G0020752.1 mouse_genomes_project 13 86614382 86885416 + Edil3 protein_coding retained_intron MGP_AJ_T0037683.1 MGP_AJ_G0020752.1 mouse_genomes_project 13 86614406 87110706 + MGP_AJ_P0037683 Edil3 protein_coding protein_coding MGP_AJ_T0037387.1 MGP_AJ_G0020644.1 mouse_genomes_project 13 62929695 62948319 + MGP_AJ_P0037387 Zfp369 protein_coding protein_coding MGP_AJ_T0037388.1 MGP_AJ_G0020644.1 mouse_genomes_project 13 62929733 62937711 + Zfp369 protein_coding retained_intron MGP_AJ_T0037389.1 MGP_AJ_G0020644.1 mouse_genomes_project 13 62929784 62935194 + MGP_AJ_P0037389 Zfp369 protein_coding protein_coding MGP_AJ_T0036561.1 MGP_AJ_G0020354.1 mouse_genomes_project 13 24701601 24711596 - MGP_AJ_P0036561 Prl7a1 protein_coding protein_coding MGP_AJ_T0036562.1 MGP_AJ_G0020354.1 mouse_genomes_project 13 24701601 24711586 - MGP_AJ_P0036562 Prl7a1 protein_coding protein_coding MGP_AJ_T0037725.1 MGP_AJ_G0020764.1 mouse_genomes_project 13 89700118 89724563 - MGP_AJ_P0037725 Ckmt2 protein_coding protein_coding MGP_AJ_T0037393.1 MGP_AJ_G0020647.1 mouse_genomes_project 13 64565743 64575025 - MGP_AJ_P0037393 Mterf3 protein_coding protein_coding MGP_AJ_T0037395.1 MGP_AJ_G0020647.1 mouse_genomes_project 13 64570512 64590538 - MGP_AJ_P0037395 Mterf3 protein_coding protein_coding MGP_AJ_T0037396.1 MGP_AJ_G0020647.1 mouse_genomes_project 13 64570520 64590517 - MGP_AJ_P0037396 Mterf3 protein_coding nonsense_mediated_decay MGP_AJ_T0037397.1 MGP_AJ_G0020647.1 mouse_genomes_project 13 64570631 64578057 - Mterf3 protein_coding processed_transcript MGP_AJ_T0037398.1 MGP_AJ_G0020647.1 mouse_genomes_project 13 64575437 64590158 - MGP_AJ_P0037398 Mterf3 protein_coding nonsense_mediated_decay MGP_AJ_T0037399.1 MGP_AJ_G0020647.1 mouse_genomes_project 13 64575467 64587852 - MGP_AJ_P0037399 Mterf3 protein_coding nonsense_mediated_decay MGP_AJ_T0037400.1 MGP_AJ_G0020647.1 mouse_genomes_project 13 64580443 64590354 - MGP_AJ_P0037400 Mterf3 protein_coding protein_coding MGP_AJ_T0037401.1 MGP_AJ_G0020647.1 mouse_genomes_project 13 64585900 64587914 - MGP_AJ_P0037401 Mterf3 protein_coding protein_coding MGP_AJ_T0037402.1 MGP_AJ_G0020647.1 mouse_genomes_project 13 64587622 64590488 - MGP_AJ_P0037402 Mterf3 protein_coding protein_coding MGP_AJ_T0037403.1 MGP_AJ_G0020647.1 mouse_genomes_project 13 64588636 64590491 - Mterf3 protein_coding processed_transcript MGP_AJ_T0038215.1 MGP_AJ_G0020928.1 mouse_genomes_project 13 117839941 117866792 - MGP_AJ_P0038215 Zfp131 protein_coding protein_coding MGP_AJ_T0038216.1 MGP_AJ_G0020928.1 mouse_genomes_project 13 117839941 117866792 - MGP_AJ_P0038216 Zfp131 protein_coding protein_coding MGP_AJ_T0037297.1 MGP_AJ_G0020603.1 mouse_genomes_project 13 58110934 58272345 + MGP_AJ_P0037297 Dapk1 protein_coding protein_coding MGP_AJ_T0037298.1 MGP_AJ_G0020603.1 mouse_genomes_project 13 58111198 58272345 + MGP_AJ_P0037298 Dapk1 protein_coding protein_coding MGP_AJ_T0038218.1 MGP_AJ_G0020930.1 mouse_genomes_project 13 117905475 117905931 + MGP_AJ_P0038218 protein_coding protein_coding MGP_AJ_T0009950.1 MGP_AJ_G0008072.1 mouse_genomes_project 13 68924583 68924704 + Mir466f-4 miRNA miRNA MGP_AJ_T0002590.1 MGP_AJ_G0002488.1 mouse_genomes_project 13 16251350 16253688 - MGP_AJ_P0002590 Tcrg-V3 TR_V_gene TR_V_gene MGP_AJ_T0003494.1 MGP_AJ_G0003184.1 mouse_genomes_project 13 93036665 93037065 + antisense antisense MGP_AJ_T0038136.1 MGP_AJ_G0020888.1 mouse_genomes_project 13 110566709 110622157 - MGP_AJ_P0038136 Ddx4 protein_coding protein_coding MGP_AJ_T0038137.1 MGP_AJ_G0020888.1 mouse_genomes_project 13 110566709 110622157 - MGP_AJ_P0038137 Ddx4 protein_coding protein_coding MGP_AJ_T0036245.1 MGP_AJ_G0020193.1 mouse_genomes_project 13 10322072 10322300 + MGP_AJ_P0036245 Gm2399 protein_coding protein_coding MGP_AJ_T0036289.1 MGP_AJ_G0020209.1 mouse_genomes_project 13 14591496 14685341 - MGP_AJ_P0036289 Cdk13 protein_coding protein_coding MGP_AJ_T0037820.1 MGP_AJ_G0020796.1 mouse_genomes_project 13 93347954 93361602 - MGP_AJ_P0037820 F2rl1 protein_coding protein_coding MGP_AJ_T0038002.1 MGP_AJ_G0020852.1 mouse_genomes_project 13 101783424 101884265 - MGP_AJ_P0038002 Erbin protein_coding protein_coding MGP_AJ_T0038003.1 MGP_AJ_G0020852.1 mouse_genomes_project 13 101783428 101854207 - MGP_AJ_P0038003 Erbin protein_coding protein_coding MGP_AJ_T0038004.1 MGP_AJ_G0020852.1 mouse_genomes_project 13 101783428 101884046 - MGP_AJ_P0038004 Erbin protein_coding protein_coding MGP_AJ_T0038005.1 MGP_AJ_G0020852.1 mouse_genomes_project 13 101784244 101884046 - MGP_AJ_P0038005 Erbin protein_coding protein_coding MGP_AJ_T0038006.1 MGP_AJ_G0020852.1 mouse_genomes_project 13 101784244 101884046 - MGP_AJ_P0038006 Erbin protein_coding protein_coding MGP_AJ_T0038007.1 MGP_AJ_G0020852.1 mouse_genomes_project 13 101784244 101884046 - MGP_AJ_P0038007 Erbin protein_coding protein_coding MGP_AJ_T0038008.1 MGP_AJ_G0020852.1 mouse_genomes_project 13 101807074 101884265 - Erbin protein_coding retained_intron MGP_AJ_T0037414.1 MGP_AJ_G0020654.1 mouse_genomes_project 13 64779254 64792660 + MGP_AJ_P0037414 Zfp759 protein_coding protein_coding MGP_AJ_T0011343.1 MGP_AJ_G0009465.1 mouse_genomes_project 13 5732600 5732895 + Gm23553 misc_RNA misc_RNA MGP_AJ_T0036557.1 MGP_AJ_G0020351.1 mouse_genomes_project 13 24624092 24630738 - MGP_AJ_P0036557 Prl8a9 protein_coding protein_coding MGP_AJ_T0037775.1 MGP_AJ_G0020780.1 mouse_genomes_project 13 91440315 91479580 - MGP_AJ_P0037775 Gm5096 protein_coding unknown_likely_coding MGP_AJ_T0037776.1 MGP_AJ_G0020780.1 mouse_genomes_project 13 91444696 91461288 - Gm5096 protein_coding retained_intron MGP_AJ_T0036665.1 MGP_AJ_G0020402.1 mouse_genomes_project 13 31292737 31299568 - MGP_AJ_P0036665 Tubb2b protein_coding protein_coding MGP_AJ_T0036608.1 MGP_AJ_G0020379.1 mouse_genomes_project 13 28953607 29491117 - MGP_AJ_P0036608 Gmds protein_coding protein_coding MGP_AJ_T0036609.1 MGP_AJ_G0020379.1 mouse_genomes_project 13 29241264 29490990 - Gmds protein_coding retained_intron MGP_AJ_T0036610.1 MGP_AJ_G0020379.1 mouse_genomes_project 13 29300038 29382061 - Gmds protein_coding processed_transcript MGP_AJ_T0036611.1 MGP_AJ_G0020379.1 mouse_genomes_project 13 29380050 29491029 - MGP_AJ_P0036611 Gmds protein_coding nonsense_mediated_decay MGP_AJ_T0000898.1 MGP_AJ_G0000832.1 mouse_genomes_project 13 99703868 99704268 - TEC TEC MGP_AJ_T0037436.1 MGP_AJ_G0020670.1 mouse_genomes_project 13 65217844 65228242 - MGP_AJ_P0037436 Zfp87 protein_coding protein_coding MGP_AJ_T0037437.1 MGP_AJ_G0020670.1 mouse_genomes_project 13 65219640 65228186 - MGP_AJ_P0037437 Zfp87 protein_coding nonsense_mediated_decay MGP_AJ_T0037438.1 MGP_AJ_G0020670.1 mouse_genomes_project 13 65220045 65228211 - MGP_AJ_P0037438 Zfp87 protein_coding protein_coding MGP_AJ_T0037439.1 MGP_AJ_G0020670.1 mouse_genomes_project 13 65223108 65228242 - MGP_AJ_P0037439 Zfp87 protein_coding protein_coding MGP_AJ_T0037121.1 MGP_AJ_G0020550.1 mouse_genomes_project 13 52867468 52878569 - MGP_AJ_P0037121 F12 protein_coding protein_coding MGP_AJ_T0037122.1 MGP_AJ_G0020550.1 mouse_genomes_project 13 52867909 52878555 - MGP_AJ_P0037122 F12 protein_coding protein_coding MGP_AJ_T0037072.1 MGP_AJ_G0020536.1 mouse_genomes_project 13 52376609 52434373 + MGP_AJ_P0037072 Unc5a protein_coding protein_coding MGP_AJ_T0037073.1 MGP_AJ_G0020536.1 mouse_genomes_project 13 52376609 52434373 + MGP_AJ_P0037073 Unc5a protein_coding protein_coding MGP_AJ_T0037074.1 MGP_AJ_G0020536.1 mouse_genomes_project 13 52424917 52428157 + MGP_AJ_P0037074 Unc5a protein_coding protein_coding MGP_AJ_T0037075.1 MGP_AJ_G0020536.1 mouse_genomes_project 13 52431364 52433008 + Unc5a protein_coding retained_intron MGP_AJ_T0037076.1 MGP_AJ_G0020536.1 mouse_genomes_project 13 52432034 52433841 + MGP_AJ_P0037076 Unc5a protein_coding protein_coding MGP_AJ_T0000878.1 MGP_AJ_G0000812.1 mouse_genomes_project 13 39020220 39020683 + TEC TEC MGP_AJ_T0037906.1 MGP_AJ_G0020831.1 mouse_genomes_project 13 97796336 97798423 - MGP_AJ_P0037906 Cartpt protein_coding protein_coding MGP_AJ_T0037190.1 MGP_AJ_G0020577.1 mouse_genomes_project 13 54175723 54207906 + MGP_AJ_P0037190 Smad5 protein_coding protein_coding MGP_AJ_T0037191.1 MGP_AJ_G0020577.1 mouse_genomes_project 13 54175752 54198757 + Smad5 protein_coding processed_transcript MGP_AJ_T0037192.1 MGP_AJ_G0020577.1 mouse_genomes_project 13 54175765 54205489 + MGP_AJ_P0037192 Smad5 protein_coding protein_coding MGP_AJ_T0037193.1 MGP_AJ_G0020577.1 mouse_genomes_project 13 54175779 54198668 + Smad5 protein_coding processed_transcript MGP_AJ_T0037194.1 MGP_AJ_G0020577.1 mouse_genomes_project 13 54176377 54205833 + MGP_AJ_P0037194 Smad5 protein_coding protein_coding MGP_AJ_T0037195.1 MGP_AJ_G0020577.1 mouse_genomes_project 13 54198559 54204524 + Smad5 protein_coding processed_transcript MGP_AJ_T0102297.1 MGP_AJ_G0040039.1 mouse_genomes_project 13 19809557 19810597 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0036911.1 MGP_AJ_G0020496.1 mouse_genomes_project 13 46953130 46999923 + MGP_AJ_P0036911 Iars protein_coding protein_coding MGP_AJ_T0036912.1 MGP_AJ_G0020496.1 mouse_genomes_project 13 46953160 46999923 + MGP_AJ_P0036912 Iars protein_coding protein_coding MGP_AJ_T0036913.1 MGP_AJ_G0020496.1 mouse_genomes_project 13 46953221 46960477 + MGP_AJ_P0036913 Iars protein_coding protein_coding MGP_AJ_T0036914.1 MGP_AJ_G0020496.1 mouse_genomes_project 13 46959556 46999397 + MGP_AJ_P0036914 Iars protein_coding protein_coding MGP_AJ_T0036915.1 MGP_AJ_G0020496.1 mouse_genomes_project 13 46971694 46977671 + MGP_AJ_P0036915 Iars protein_coding nonsense_mediated_decay MGP_AJ_T0036916.1 MGP_AJ_G0020496.1 mouse_genomes_project 13 46972445 46981626 + Iars protein_coding retained_intron MGP_AJ_T0036917.1 MGP_AJ_G0020496.1 mouse_genomes_project 13 46974108 46981000 + Iars protein_coding retained_intron MGP_AJ_T0036918.1 MGP_AJ_G0020496.1 mouse_genomes_project 13 46983700 46988950 + Iars protein_coding retained_intron MGP_AJ_T0036919.1 MGP_AJ_G0020496.1 mouse_genomes_project 13 46987963 46988941 + Iars protein_coding retained_intron MGP_AJ_T0099470.1 MGP_AJ_G0037436.1 mouse_genomes_project 13 93739736 93739895 - Gm24032 snRNA snRNA MGP_AJ_T0037822.1 MGP_AJ_G0020798.1 mouse_genomes_project 13 93463607 93734598 - MGP_AJ_P0037822 Iqgap2 protein_coding protein_coding MGP_AJ_T0036573.1 MGP_AJ_G0020362.1 mouse_genomes_project 13 25207745 25215082 + MGP_AJ_P0036573 Prl4a1 protein_coding protein_coding MGP_AJ_T0102282.1 MGP_AJ_G0040024.1 mouse_genomes_project 13 18961463 18961879 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0017342.1 MGP_AJ_G0015221.1 mouse_genomes_project 13 18891003 18892563 + Gm11291 processed_transcript processed_transcript MGP_AJ_T0098400.1 MGP_AJ_G0036384.1 mouse_genomes_project 13 89054610 89055037 + pseudogene pseudogene MGP_AJ_T0012897.1 MGP_AJ_G0010992.1 mouse_genomes_project 13 20395900 20396056 + processed_pseudogene processed_pseudogene MGP_AJ_T0036572.1 MGP_AJ_G0020361.1 mouse_genomes_project 13 24953429 24976062 + MGP_AJ_P0036572 protein_coding protein_coding MGP_AJ_T0011360.1 MGP_AJ_G0009482.1 mouse_genomes_project 13 100187902 100188186 + Gm25808 misc_RNA misc_RNA MGP_AJ_T0037425.1 MGP_AJ_G0020663.1 mouse_genomes_project 13 65076273 65085636 - MGP_AJ_P0037425 protein_coding protein_coding MGP_AJ_T0012966.1 MGP_AJ_G0011061.1 mouse_genomes_project 13 109319872 109320345 - processed_pseudogene processed_pseudogene MGP_AJ_T0036589.1 MGP_AJ_G0020367.1 mouse_genomes_project 13 27281236 27391661 + MGP_AJ_P0036589 Mboat1 protein_coding protein_coding MGP_AJ_T0036590.1 MGP_AJ_G0020367.1 mouse_genomes_project 13 27281269 27376293 + MGP_AJ_P0036590 Mboat1 protein_coding protein_coding MGP_AJ_T0036591.1 MGP_AJ_G0020367.1 mouse_genomes_project 13 27281284 27308354 + Mboat1 protein_coding processed_transcript MGP_AJ_T0036232.1 MGP_AJ_G0020187.1 mouse_genomes_project 13 9025975 9045692 - MGP_AJ_P0036232 Lgals8 protein_coding protein_coding MGP_AJ_T0036233.1 MGP_AJ_G0020187.1 mouse_genomes_project 13 9025980 9034133 - Lgals8 protein_coding retained_intron MGP_AJ_T0036234.1 MGP_AJ_G0020187.1 mouse_genomes_project 13 9027408 9047972 - MGP_AJ_P0036234 Lgals8 protein_coding protein_coding MGP_AJ_T0036235.1 MGP_AJ_G0020187.1 mouse_genomes_project 13 9037907 9043014 - Lgals8 protein_coding retained_intron MGP_AJ_T0036236.1 MGP_AJ_G0020187.1 mouse_genomes_project 13 9039228 9041505 - Lgals8 protein_coding retained_intron MGP_AJ_T0036237.1 MGP_AJ_G0020187.1 mouse_genomes_project 13 9045747 9047524 - Lgals8 protein_coding processed_transcript MGP_AJ_T0012887.1 MGP_AJ_G0010982.1 mouse_genomes_project 13 18770126 18773179 + processed_pseudogene processed_pseudogene MGP_AJ_T0006522.1 MGP_AJ_G0005408.1 mouse_genomes_project 13 20285676 20327809 - 4930557F10Rik lincRNA lincRNA MGP_AJ_T0003476.1 MGP_AJ_G0003176.1 mouse_genomes_project 13 71834055 71835258 - Gm15912 antisense antisense MGP_AJ_T0037361.1 MGP_AJ_G0020627.1 mouse_genomes_project 13 61784103 61819545 - MGP_AJ_P0037361 Slc35d2 protein_coding protein_coding MGP_AJ_T0012903.1 MGP_AJ_G0010998.1 mouse_genomes_project 13 22217522 22217840 - processed_pseudogene processed_pseudogene MGP_AJ_T0102328.1 MGP_AJ_G0040070.1 mouse_genomes_project 13 55895017 55896868 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0006542.1 MGP_AJ_G0005423.1 mouse_genomes_project 13 28459406 28460582 - Gm11373 lincRNA lincRNA MGP_AJ_T0006622.1 MGP_AJ_G0005476.1 mouse_genomes_project 13 89208933 89228835 - A830009L08Rik lincRNA lincRNA MGP_AJ_T0037781.1 MGP_AJ_G0020784.1 mouse_genomes_project 13 91883580 92021657 + MGP_AJ_P0037781 Lhfpl2 protein_coding protein_coding MGP_AJ_T0037782.1 MGP_AJ_G0020784.1 mouse_genomes_project 13 91883616 91949278 + Lhfpl2 protein_coding retained_intron MGP_AJ_T0037783.1 MGP_AJ_G0020784.1 mouse_genomes_project 13 91909350 92001098 + MGP_AJ_P0037783 Lhfpl2 protein_coding protein_coding MGP_AJ_T0037784.1 MGP_AJ_G0020784.1 mouse_genomes_project 13 91961216 92000784 + MGP_AJ_P0037784 Lhfpl2 protein_coding protein_coding MGP_AJ_T0037785.1 MGP_AJ_G0020784.1 mouse_genomes_project 13 91999268 92020765 + MGP_AJ_P0037785 Lhfpl2 protein_coding protein_coding MGP_AJ_T0037786.1 MGP_AJ_G0020784.1 mouse_genomes_project 13 92000231 92000671 + Lhfpl2 protein_coding processed_transcript MGP_AJ_T0037787.1 MGP_AJ_G0020784.1 mouse_genomes_project 13 92000449 92021657 + MGP_AJ_P0037787 Lhfpl2 protein_coding protein_coding MGP_AJ_T0037461.1 MGP_AJ_G0020682.1 mouse_genomes_project 13 65628974 65629572 + MGP_AJ_P0037461 BC048507 protein_coding protein_coding MGP_AJ_T0037444.1 MGP_AJ_G0020673.1 mouse_genomes_project 13 65341288 65366729 - MGP_AJ_P0037444 Zfp729a protein_coding protein_coding MGP_AJ_T0100724.1 MGP_AJ_G0038690.1 mouse_genomes_project 13 33828696 33828828 + Gm26395 snoRNA snoRNA MGP_AJ_T0036455.1 MGP_AJ_G0020310.1 mouse_genomes_project 13 20752253 20758697 - MGP_AJ_P0036455 Hfe protein_coding protein_coding MGP_AJ_T0036456.1 MGP_AJ_G0020310.1 mouse_genomes_project 13 20752253 20758697 - MGP_AJ_P0036456 Hfe protein_coding protein_coding MGP_AJ_T0036457.1 MGP_AJ_G0020310.1 mouse_genomes_project 13 20752253 20758697 - MGP_AJ_P0036457 Hfe protein_coding protein_coding MGP_AJ_T0038209.1 MGP_AJ_G0020923.1 mouse_genomes_project 13 117666187 117669261 + MGP_AJ_P0038209 protein_coding protein_coding MGP_AJ_T0100746.1 MGP_AJ_G0038712.1 mouse_genomes_project 13 87912760 87912894 + Gm24507 snoRNA snoRNA MGP_AJ_T0037385.1 MGP_AJ_G0020642.1 mouse_genomes_project 13 62823059 62845279 - MGP_AJ_P0037385 Nlrp4f protein_coding protein_coding MGP_AJ_T0036371.1 MGP_AJ_G0020246.1 mouse_genomes_project 13 18574503 18575159 + MGP_AJ_P0036371 Hist1h3h protein_coding protein_coding MGP_AJ_T0036964.1 MGP_AJ_G0020511.1 mouse_genomes_project 13 50007688 50073259 + MGP_AJ_P0036964 Syk protein_coding protein_coding MGP_AJ_T0036965.1 MGP_AJ_G0020511.1 mouse_genomes_project 13 50007952 50068077 + MGP_AJ_P0036965 Syk protein_coding protein_coding MGP_AJ_T0036966.1 MGP_AJ_G0020511.1 mouse_genomes_project 13 50008018 50038177 + Syk protein_coding retained_intron MGP_AJ_T0036967.1 MGP_AJ_G0020511.1 mouse_genomes_project 13 50021360 50073249 + MGP_AJ_P0036967 Syk protein_coding protein_coding MGP_AJ_T0036968.1 MGP_AJ_G0020511.1 mouse_genomes_project 13 50021466 50048830 + Syk protein_coding retained_intron MGP_AJ_T0038176.1 MGP_AJ_G0020908.1 mouse_genomes_project 13 112798679 112899226 - MGP_AJ_P0038176 Itga2 protein_coding protein_coding MGP_AJ_T0036737.1 MGP_AJ_G0020430.1 mouse_genomes_project 13 36115318 36143700 - MGP_AJ_P0036737 Slc35b3 protein_coding unknown_likely_coding MGP_AJ_T0036738.1 MGP_AJ_G0020430.1 mouse_genomes_project 13 36115326 36143694 - MGP_AJ_P0036738 Slc35b3 protein_coding protein_coding MGP_AJ_T0036739.1 MGP_AJ_G0020430.1 mouse_genomes_project 13 36115326 36144032 - MGP_AJ_P0036739 Slc35b3 protein_coding protein_coding MGP_AJ_T0006554.1 MGP_AJ_G0005431.1 mouse_genomes_project 13 32118635 32137857 + Gm16984 lincRNA lincRNA MGP_AJ_T0006555.1 MGP_AJ_G0005431.1 mouse_genomes_project 13 32118688 32144362 + Gm16984 lincRNA lincRNA MGP_AJ_T0036370.1 MGP_AJ_G0020245.1 mouse_genomes_project 13 18559984 18560949 + MGP_AJ_P0036370 Olfr1359 protein_coding protein_coding MGP_AJ_T0009942.1 MGP_AJ_G0008064.1 mouse_genomes_project 13 57800698 57800797 + Gm24999 miRNA miRNA MGP_AJ_T0009952.1 MGP_AJ_G0008074.1 mouse_genomes_project 13 80585190 80585249 - Mir3961 miRNA miRNA MGP_AJ_T0102293.1 MGP_AJ_G0040035.1 mouse_genomes_project 13 19566107 19567201 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0012873.1 MGP_AJ_G0010968.1 mouse_genomes_project 13 15876 16661 - processed_pseudogene processed_pseudogene MGP_AJ_T0037590.1 MGP_AJ_G0020738.1 mouse_genomes_project 13 75576472 76042593 + MGP_AJ_P0037590 Fam172a protein_coding protein_coding MGP_AJ_T0037591.1 MGP_AJ_G0020738.1 mouse_genomes_project 13 75576477 76042586 + MGP_AJ_P0037591 Fam172a protein_coding protein_coding MGP_AJ_T0006639.1 MGP_AJ_G0005489.1 mouse_genomes_project 13 98799616 98931503 + Gm29502 lincRNA lincRNA MGP_AJ_T0036278.1 MGP_AJ_G0020203.1 mouse_genomes_project 13 11507722 11523188 + MGP_AJ_P0036278 Psma2 protein_coding protein_coding MGP_AJ_T0036362.1 MGP_AJ_G0020240.1 mouse_genomes_project 13 18440923 18449104 - MGP_AJ_P0036362 Olfr1364 protein_coding protein_coding MGP_AJ_T0036363.1 MGP_AJ_G0020240.1 mouse_genomes_project 13 18440923 18441868 - MGP_AJ_P0036363 Olfr1364 protein_coding protein_coding MGP_AJ_T0036288.1 MGP_AJ_G0020208.1 mouse_genomes_project 13 14570951 14574644 + MGP_AJ_P0036288 Mplkip protein_coding protein_coding MGP_AJ_T0003438.1 MGP_AJ_G0003152.1 mouse_genomes_project 13 21993324 22002174 + 4932702P03Rik antisense antisense MGP_AJ_T0003439.1 MGP_AJ_G0003152.1 mouse_genomes_project 13 21993327 21995105 + 4932702P03Rik antisense antisense MGP_AJ_T0036961.1 MGP_AJ_G0020509.1 mouse_genomes_project 13 49271590 49273381 + MGP_AJ_P0036961 Gadd45g protein_coding protein_coding MGP_AJ_T0036962.1 MGP_AJ_G0020509.1 mouse_genomes_project 13 49271656 49273137 + Gadd45g protein_coding retained_intron MGP_AJ_T0009958.1 MGP_AJ_G0008080.1 mouse_genomes_project 13 92347753 92347867 + Gm25109 miRNA miRNA MGP_AJ_T0098915.1 MGP_AJ_G0036895.1 mouse_genomes_project 13 61036765 61041583 - Gm16132 sense_intronic sense_intronic MGP_AJ_T0036633.1 MGP_AJ_G0020392.1 mouse_genomes_project 13 30674969 30692643 + MGP_AJ_P0036633 protein_coding protein_coding MGP_AJ_T0037362.1 MGP_AJ_G0020628.1 mouse_genomes_project 13 61823295 61843614 - MGP_AJ_P0037362 Zfp367 protein_coding protein_coding MGP_AJ_T0037363.1 MGP_AJ_G0020628.1 mouse_genomes_project 13 61825676 61842841 - Zfp367 protein_coding processed_transcript MGP_AJ_T0037364.1 MGP_AJ_G0020628.1 mouse_genomes_project 13 61825803 61840627 - Zfp367 protein_coding processed_transcript MGP_AJ_T0037365.1 MGP_AJ_G0020628.1 mouse_genomes_project 13 61830749 61843614 - MGP_AJ_P0037365 Zfp367 protein_coding protein_coding MGP_AJ_T0037760.1 MGP_AJ_G0020776.1 mouse_genomes_project 13 90866305 90964712 - MGP_AJ_P0037760 Cmya5 protein_coding protein_coding MGP_AJ_T0038207.1 MGP_AJ_G0020921.1 mouse_genomes_project 13 117521997 117545849 + MGP_AJ_P0038207 protein_coding protein_coding MGP_AJ_T0036708.1 MGP_AJ_G0020419.1 mouse_genomes_project 13 34506503 34582348 + MGP_AJ_P0036708 Ly86 protein_coding protein_coding MGP_AJ_T0036389.1 MGP_AJ_G0020261.1 mouse_genomes_project 13 18697652 20798772 - MGP_AJ_P0036389 protein_coding protein_coding MGP_AJ_T0036537.1 MGP_AJ_G0020339.1 mouse_genomes_project 13 24133518 24140935 + MGP_AJ_P0036537 Prl protein_coding protein_coding MGP_AJ_T0037618.1 MGP_AJ_G0020743.1 mouse_genomes_project 13 79550544 79567039 + MGP_AJ_P0037618 Lysmd3 protein_coding protein_coding MGP_AJ_T0038189.1 MGP_AJ_G0020917.1 mouse_genomes_project 13 116450347 116452000 + MGP_AJ_P0038189 B430218F22Rik protein_coding protein_coding MGP_AJ_T0037961.1 MGP_AJ_G0020845.1 mouse_genomes_project 13 98704765 98721898 - MGP_AJ_P0037961 Cenph protein_coding protein_coding MGP_AJ_T0037962.1 MGP_AJ_G0020845.1 mouse_genomes_project 13 98718191 98721782 - Cenph protein_coding retained_intron MGP_AJ_T0036438.1 MGP_AJ_G0020298.1 mouse_genomes_project 13 20457424 20459748 - MGP_AJ_P0036438 Abt1 protein_coding protein_coding MGP_AJ_T0012916.1 MGP_AJ_G0011011.1 mouse_genomes_project 13 27326966 27327395 + processed_pseudogene processed_pseudogene MGP_AJ_T0037152.1 MGP_AJ_G0020559.1 mouse_genomes_project 13 53053917 53064462 + MGP_AJ_P0037152 B4galt7 protein_coding protein_coding MGP_AJ_T0037153.1 MGP_AJ_G0020559.1 mouse_genomes_project 13 53054086 53062037 + B4galt7 protein_coding retained_intron MGP_AJ_T0037154.1 MGP_AJ_G0020559.1 mouse_genomes_project 13 53054086 53062821 + MGP_AJ_P0037154 B4galt7 protein_coding protein_coding MGP_AJ_T0037155.1 MGP_AJ_G0020559.1 mouse_genomes_project 13 53054086 53064461 + MGP_AJ_P0037155 B4galt7 protein_coding protein_coding MGP_AJ_T0037376.1 MGP_AJ_G0020636.1 mouse_genomes_project 13 62582184 62588018 + MGP_AJ_P0037376 Spata31 protein_coding protein_coding MGP_AJ_T0012968.1 MGP_AJ_G0011063.1 mouse_genomes_project 13 109840290 109842188 - processed_pseudogene processed_pseudogene MGP_AJ_T0009944.1 MGP_AJ_G0008066.1 mouse_genomes_project 13 60442009 60442092 + Gm24588 miRNA miRNA MGP_AJ_T0036548.1 MGP_AJ_G0020347.1 mouse_genomes_project 13 24424700 24433029 + MGP_AJ_P0036548 Prl8a2 protein_coding protein_coding MGP_AJ_T0036549.1 MGP_AJ_G0020347.1 mouse_genomes_project 13 24424706 24433017 + MGP_AJ_P0036549 Prl8a2 protein_coding protein_coding MGP_AJ_T0006506.1 MGP_AJ_G0005403.1 mouse_genomes_project 13 54860 63277 + 2810429I04Rik lincRNA lincRNA MGP_AJ_T0006507.1 MGP_AJ_G0005403.1 mouse_genomes_project 13 54864 62287 + 2810429I04Rik lincRNA lincRNA MGP_AJ_T0006508.1 MGP_AJ_G0005403.1 mouse_genomes_project 13 54873 65095 + 2810429I04Rik lincRNA lincRNA MGP_AJ_T0006509.1 MGP_AJ_G0005403.1 mouse_genomes_project 13 54873 85392 + 2810429I04Rik lincRNA lincRNA MGP_AJ_T0006510.1 MGP_AJ_G0005403.1 mouse_genomes_project 13 54876 66341 + 2810429I04Rik lincRNA lincRNA MGP_AJ_T0006511.1 MGP_AJ_G0005403.1 mouse_genomes_project 13 54885 65619 + 2810429I04Rik lincRNA lincRNA MGP_AJ_T0006512.1 MGP_AJ_G0005403.1 mouse_genomes_project 13 54892 62498 + 2810429I04Rik lincRNA lincRNA MGP_AJ_T0006513.1 MGP_AJ_G0005403.1 mouse_genomes_project 13 54907 62849 + 2810429I04Rik lincRNA lincRNA MGP_AJ_T0006514.1 MGP_AJ_G0005403.1 mouse_genomes_project 13 54933 69491 + 2810429I04Rik lincRNA lincRNA MGP_AJ_T0006515.1 MGP_AJ_G0005403.1 mouse_genomes_project 13 54934 66321 + 2810429I04Rik lincRNA lincRNA MGP_AJ_T0006516.1 MGP_AJ_G0005403.1 mouse_genomes_project 13 54956 84939 + 2810429I04Rik lincRNA lincRNA MGP_AJ_T0037684.1 MGP_AJ_G0020753.1 mouse_genomes_project 13 87336664 87414640 + MGP_AJ_P0037684 Hapln1 protein_coding protein_coding MGP_AJ_T0017359.1 MGP_AJ_G0015231.1 mouse_genomes_project 13 57266971 57268946 + Etohd2 processed_transcript processed_transcript MGP_AJ_T0017360.1 MGP_AJ_G0015231.1 mouse_genomes_project 13 57266972 57270687 + Etohd2 processed_transcript processed_transcript MGP_AJ_T0037093.1 MGP_AJ_G0020539.1 mouse_genomes_project 13 52549320 52579857 + MGP_AJ_P0037093 Zfp346 protein_coding protein_coding MGP_AJ_T0037094.1 MGP_AJ_G0020539.1 mouse_genomes_project 13 52549323 52567285 + MGP_AJ_P0037094 Zfp346 protein_coding nonsense_mediated_decay MGP_AJ_T0037095.1 MGP_AJ_G0020539.1 mouse_genomes_project 13 52549326 52577192 + MGP_AJ_P0037095 Zfp346 protein_coding protein_coding MGP_AJ_T0037096.1 MGP_AJ_G0020539.1 mouse_genomes_project 13 52549344 52577510 + MGP_AJ_P0037096 Zfp346 protein_coding protein_coding MGP_AJ_T0037097.1 MGP_AJ_G0020539.1 mouse_genomes_project 13 52549345 52575405 + MGP_AJ_P0037097 Zfp346 protein_coding nonsense_mediated_decay MGP_AJ_T0037098.1 MGP_AJ_G0020539.1 mouse_genomes_project 13 52549345 52577560 + MGP_AJ_P0037098 Zfp346 protein_coding nonsense_mediated_decay MGP_AJ_T0037099.1 MGP_AJ_G0020539.1 mouse_genomes_project 13 52549349 52577301 + MGP_AJ_P0037099 Zfp346 protein_coding nonsense_mediated_decay MGP_AJ_T0037100.1 MGP_AJ_G0020539.1 mouse_genomes_project 13 52549351 52577393 + MGP_AJ_P0037100 Zfp346 protein_coding nonsense_mediated_decay MGP_AJ_T0037101.1 MGP_AJ_G0020539.1 mouse_genomes_project 13 52549411 52577180 + MGP_AJ_P0037101 Zfp346 protein_coding protein_coding MGP_AJ_T0037102.1 MGP_AJ_G0020539.1 mouse_genomes_project 13 52556920 52557803 + Zfp346 protein_coding retained_intron MGP_AJ_T0037103.1 MGP_AJ_G0020539.1 mouse_genomes_project 13 52566822 52577161 + Zfp346 protein_coding retained_intron MGP_AJ_T0037104.1 MGP_AJ_G0020539.1 mouse_genomes_project 13 52575028 52577435 + Zfp346 protein_coding retained_intron MGP_AJ_T0000896.1 MGP_AJ_G0000830.1 mouse_genomes_project 13 99385017 99385509 - TEC TEC MGP_AJ_T0098573.1 MGP_AJ_G0036557.1 mouse_genomes_project 13 11012568 11012681 - n-R5s52 rRNA rRNA MGP_AJ_T0099454.1 MGP_AJ_G0037420.1 mouse_genomes_project 13 37013675 37013840 - Gm23972 snRNA snRNA MGP_AJ_T0036513.1 MGP_AJ_G0020329.1 mouse_genomes_project 13 21886502 21898976 + MGP_AJ_P0036513 BC005537 protein_coding protein_coding MGP_AJ_T0036514.1 MGP_AJ_G0020329.1 mouse_genomes_project 13 21886865 21897624 + MGP_AJ_P0036514 BC005537 protein_coding protein_coding MGP_AJ_T0036312.1 MGP_AJ_G0020216.1 mouse_genomes_project 13 16499364 16526726 - MGP_AJ_P0036312 Epdr1 protein_coding protein_coding MGP_AJ_T0012927.1 MGP_AJ_G0011022.1 mouse_genomes_project 13 37935647 37936921 + processed_pseudogene processed_pseudogene MGP_AJ_T0000871.1 MGP_AJ_G0000806.1 mouse_genomes_project 13 14883749 14892213 + TEC TEC MGP_AJ_T0037463.1 MGP_AJ_G0020684.1 mouse_genomes_project 13 66375178 66385229 + MGP_AJ_P0037463 Fastkd3 protein_coding protein_coding MGP_AJ_T0037464.1 MGP_AJ_G0020684.1 mouse_genomes_project 13 66375376 66385237 + MGP_AJ_P0037464 Fastkd3 protein_coding unknown_likely_coding MGP_AJ_T0036167.1 MGP_AJ_G0020174.1 mouse_genomes_project 13 5419577 5483739 - MGP_AJ_P0036167 Wdr37 protein_coding protein_coding MGP_AJ_T0036168.1 MGP_AJ_G0020174.1 mouse_genomes_project 13 5419604 5483053 - MGP_AJ_P0036168 Wdr37 protein_coding protein_coding MGP_AJ_T0036169.1 MGP_AJ_G0020174.1 mouse_genomes_project 13 5422377 5459405 - MGP_AJ_P0036169 Wdr37 protein_coding nonsense_mediated_decay MGP_AJ_T0036170.1 MGP_AJ_G0020174.1 mouse_genomes_project 13 5430087 5461326 - MGP_AJ_P0036170 Wdr37 protein_coding nonsense_mediated_decay MGP_AJ_T0036171.1 MGP_AJ_G0020174.1 mouse_genomes_project 13 5430145 5465475 - MGP_AJ_P0036171 Wdr37 protein_coding protein_coding MGP_AJ_T0036172.1 MGP_AJ_G0020174.1 mouse_genomes_project 13 5445636 5447482 - Wdr37 protein_coding retained_intron MGP_AJ_T0036173.1 MGP_AJ_G0020174.1 mouse_genomes_project 13 5454529 5470531 - MGP_AJ_P0036173 Wdr37 protein_coding protein_coding MGP_AJ_T0036174.1 MGP_AJ_G0020174.1 mouse_genomes_project 13 5459447 5483745 - MGP_AJ_P0036174 Wdr37 protein_coding protein_coding MGP_AJ_T0036175.1 MGP_AJ_G0020174.1 mouse_genomes_project 13 5461310 5472994 - MGP_AJ_P0036175 Wdr37 protein_coding nonsense_mediated_decay MGP_AJ_T0036176.1 MGP_AJ_G0020174.1 mouse_genomes_project 13 5462247 5483032 - MGP_AJ_P0036176 Wdr37 protein_coding protein_coding MGP_AJ_T0036177.1 MGP_AJ_G0020174.1 mouse_genomes_project 13 5464436 5482988 - MGP_AJ_P0036177 Wdr37 protein_coding protein_coding MGP_AJ_T0036178.1 MGP_AJ_G0020174.1 mouse_genomes_project 13 5464439 5472991 - MGP_AJ_P0036178 Wdr37 protein_coding protein_coding MGP_AJ_T0036179.1 MGP_AJ_G0020174.1 mouse_genomes_project 13 5465092 5483003 - Wdr37 protein_coding processed_transcript MGP_AJ_T0036180.1 MGP_AJ_G0020174.1 mouse_genomes_project 13 5465440 5470544 - Wdr37 protein_coding processed_transcript MGP_AJ_T0036181.1 MGP_AJ_G0020174.1 mouse_genomes_project 13 5468686 5483918 - MGP_AJ_P0036181 Wdr37 protein_coding protein_coding MGP_AJ_T0036182.1 MGP_AJ_G0020174.1 mouse_genomes_project 13 5472904 5483016 - MGP_AJ_P0036182 Wdr37 protein_coding protein_coding MGP_AJ_T0036796.1 MGP_AJ_G0020455.1 mouse_genomes_project 13 40706361 40726293 - MGP_AJ_P0036796 Mcur1 protein_coding protein_coding MGP_AJ_T0036410.1 MGP_AJ_G0020273.1 mouse_genomes_project 13 19201184 19202135 + MGP_AJ_P0036410 Vmn1r195 protein_coding protein_coding MGP_AJ_T0037624.1 MGP_AJ_G0020745.1 mouse_genomes_project 13 79607096 79652290 + MGP_AJ_P0037624 Mblac2 protein_coding protein_coding MGP_AJ_T0100733.1 MGP_AJ_G0038699.1 mouse_genomes_project 13 54397210 54397339 - Gm22777 snoRNA snoRNA MGP_AJ_T0009924.1 MGP_AJ_G0008046.1 mouse_genomes_project 13 20990898 20991027 - Gm44344 miRNA miRNA MGP_AJ_T0006621.1 MGP_AJ_G0005475.1 mouse_genomes_project 13 81927615 81970388 - Gm17750 lincRNA lincRNA MGP_AJ_T0099461.1 MGP_AJ_G0037427.1 mouse_genomes_project 13 44105932 44106036 + Gm22960 snRNA snRNA MGP_AJ_T0036678.1 MGP_AJ_G0020407.1 mouse_genomes_project 13 32018130 32045493 + MGP_AJ_P0036678 Prpf4b protein_coding protein_coding MGP_AJ_T0037598.1 MGP_AJ_G0020741.1 mouse_genomes_project 13 78778194 78784454 + Arrdc3 protein_coding retained_intron MGP_AJ_T0037599.1 MGP_AJ_G0020741.1 mouse_genomes_project 13 78778220 78790846 + MGP_AJ_P0037599 Arrdc3 protein_coding nonsense_mediated_decay MGP_AJ_T0037600.1 MGP_AJ_G0020741.1 mouse_genomes_project 13 78778460 78790846 + MGP_AJ_P0037600 Arrdc3 protein_coding protein_coding MGP_AJ_T0037601.1 MGP_AJ_G0020741.1 mouse_genomes_project 13 78784914 78786063 + Arrdc3 protein_coding retained_intron MGP_AJ_T0037602.1 MGP_AJ_G0020741.1 mouse_genomes_project 13 78785328 78786453 + Arrdc3 protein_coding retained_intron MGP_AJ_T0102318.1 MGP_AJ_G0040060.1 mouse_genomes_project 13 30702052 30719789 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0036515.1 MGP_AJ_G0020330.1 mouse_genomes_project 13 21903446 21917154 - MGP_AJ_P0036515 Acot13 protein_coding protein_coding MGP_AJ_T0003472.1 MGP_AJ_G0003174.1 mouse_genomes_project 13 68370479 68373305 + 1700100L14Rik antisense antisense MGP_AJ_T0003473.1 MGP_AJ_G0003174.1 mouse_genomes_project 13 68370518 68373300 + 1700100L14Rik antisense antisense MGP_AJ_T0038111.1 MGP_AJ_G0020883.1 mouse_genomes_project 13 109656993 109682762 + MGP_AJ_P0038111 Mier3 protein_coding protein_coding MGP_AJ_T0038112.1 MGP_AJ_G0020883.1 mouse_genomes_project 13 109657131 109681801 + MGP_AJ_P0038112 Mier3 protein_coding protein_coding MGP_AJ_T0038113.1 MGP_AJ_G0020883.1 mouse_genomes_project 13 109657140 109662530 + Mier3 protein_coding retained_intron MGP_AJ_T0038114.1 MGP_AJ_G0020883.1 mouse_genomes_project 13 109657141 109682759 + MGP_AJ_P0038114 Mier3 protein_coding nonsense_mediated_decay MGP_AJ_T0038115.1 MGP_AJ_G0020883.1 mouse_genomes_project 13 109657578 109682768 + MGP_AJ_P0038115 Mier3 protein_coding protein_coding MGP_AJ_T0006544.1 MGP_AJ_G0005425.1 mouse_genomes_project 13 28483883 28503143 - G630018N14Rik lincRNA lincRNA MGP_AJ_T0006545.1 MGP_AJ_G0005425.1 mouse_genomes_project 13 28496474 28501771 - G630018N14Rik lincRNA lincRNA MGP_AJ_T0009935.1 MGP_AJ_G0008057.1 mouse_genomes_project 13 52003122 52003259 + Gm24195 miRNA miRNA MGP_AJ_T0037168.1 MGP_AJ_G0020566.1 mouse_genomes_project 13 53282795 53289166 - MGP_AJ_P0037168 Pitx1 protein_coding protein_coding MGP_AJ_T0037169.1 MGP_AJ_G0020566.1 mouse_genomes_project 13 53286219 53293936 - MGP_AJ_P0037169 Pitx1 protein_coding protein_coding MGP_AJ_T0003503.1 MGP_AJ_G0003188.1 mouse_genomes_project 13 100730462 100732711 + Gm17160 antisense antisense MGP_AJ_T0100722.1 MGP_AJ_G0038688.1 mouse_genomes_project 13 28564212 28564337 + Gm23351 snoRNA snoRNA MGP_AJ_T0037289.1 MGP_AJ_G0020598.1 mouse_genomes_project 13 57235250 57239329 - MGP_AJ_P0037289 1700014D04Rik protein_coding protein_coding MGP_AJ_T0037290.1 MGP_AJ_G0020598.1 mouse_genomes_project 13 57236363 57237158 - MGP_AJ_P0037290 1700014D04Rik protein_coding protein_coding MGP_AJ_T0037291.1 MGP_AJ_G0020598.1 mouse_genomes_project 13 57238114 57241156 - MGP_AJ_P0037291 1700014D04Rik protein_coding protein_coding MGP_AJ_T0036668.1 MGP_AJ_G0020404.1 mouse_genomes_project 13 31339089 31504254 - MGP_AJ_P0036668 Slc22a23 protein_coding protein_coding MGP_AJ_T0036669.1 MGP_AJ_G0020404.1 mouse_genomes_project 13 31339092 31503869 - MGP_AJ_P0036669 Slc22a23 protein_coding protein_coding MGP_AJ_T0036670.1 MGP_AJ_G0020404.1 mouse_genomes_project 13 31342802 31353466 - Slc22a23 protein_coding retained_intron MGP_AJ_T0036671.1 MGP_AJ_G0020404.1 mouse_genomes_project 13 31363953 31503667 - MGP_AJ_P0036671 Slc22a23 protein_coding nonsense_mediated_decay MGP_AJ_T0036672.1 MGP_AJ_G0020404.1 mouse_genomes_project 13 31381045 31503275 - Slc22a23 protein_coding processed_transcript MGP_AJ_T0037708.1 MGP_AJ_G0020760.1 mouse_genomes_project 13 88763657 89058212 - MGP_AJ_P0037708 Atg10 protein_coding protein_coding MGP_AJ_T0036694.1 MGP_AJ_G0020412.1 mouse_genomes_project 13 32829048 33043197 + MGP_AJ_P0036694 Cdyl protein_coding protein_coding MGP_AJ_T0036695.1 MGP_AJ_G0020412.1 mouse_genomes_project 13 32910408 33043191 + MGP_AJ_P0036695 Cdyl protein_coding protein_coding MGP_AJ_T0003452.1 MGP_AJ_G0003163.1 mouse_genomes_project 13 51649988 51653573 - Gm16578 antisense antisense MGP_AJ_T0012908.1 MGP_AJ_G0011003.1 mouse_genomes_project 13 23299503 23300020 + processed_pseudogene processed_pseudogene MGP_AJ_T0012969.1 MGP_AJ_G0011064.1 mouse_genomes_project 13 110864413 110865370 + processed_pseudogene processed_pseudogene MGP_AJ_T0009955.1 MGP_AJ_G0008077.1 mouse_genomes_project 13 88583692 88583802 + Gm44338 miRNA miRNA MGP_AJ_T0036838.1 MGP_AJ_G0020470.1 mouse_genomes_project 13 43950824 44134028 - MGP_AJ_P0036838 Kif13a protein_coding protein_coding MGP_AJ_T0036839.1 MGP_AJ_G0020470.1 mouse_genomes_project 13 43950825 44133922 - MGP_AJ_P0036839 Kif13a protein_coding unknown_likely_coding MGP_AJ_T0099465.1 MGP_AJ_G0037431.1 mouse_genomes_project 13 61987525 61987613 - Gm25654 snRNA snRNA MGP_AJ_T0000886.1 MGP_AJ_G0000820.1 mouse_genomes_project 13 81629279 81633105 - TEC TEC MGP_AJ_T0100751.1 MGP_AJ_G0038717.1 mouse_genomes_project 13 103179561 103179691 - Gm25631 snoRNA snoRNA MGP_AJ_T0006560.1 MGP_AJ_G0005435.1 mouse_genomes_project 13 34671430 34674660 + Gm29590 lincRNA lincRNA MGP_AJ_T0012948.1 MGP_AJ_G0011043.1 mouse_genomes_project 13 74620246 74621539 + processed_pseudogene processed_pseudogene MGP_AJ_T0036679.1 MGP_AJ_G0020408.1 mouse_genomes_project 13 32052578 32062610 - MGP_AJ_P0036679 Fam217a protein_coding protein_coding MGP_AJ_T0099474.1 MGP_AJ_G0037440.1 mouse_genomes_project 13 104715156 104715263 - Gm24527 snRNA snRNA MGP_AJ_T0006623.1 MGP_AJ_G0005477.1 mouse_genomes_project 13 91769467 91771493 - Gm26527 lincRNA lincRNA MGP_AJ_T0102321.1 MGP_AJ_G0040063.1 mouse_genomes_project 13 30884151 30887203 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0100712.1 MGP_AJ_G0038678.1 mouse_genomes_project 13 5571323 5571458 - Gm25274 snoRNA snoRNA MGP_AJ_T0036331.1 MGP_AJ_G0020226.1 mouse_genomes_project 13 18137790 18144092 - MGP_AJ_P0036331 Gpx5 protein_coding protein_coding MGP_AJ_T0036332.1 MGP_AJ_G0020226.1 mouse_genomes_project 13 18137790 18144047 - MGP_AJ_P0036332 Gpx5 protein_coding protein_coding MGP_AJ_T0100734.1 MGP_AJ_G0038700.1 mouse_genomes_project 13 55808570 55808712 + Gm24284 snoRNA snoRNA MGP_AJ_T0037244.1 MGP_AJ_G0020590.1 mouse_genomes_project 13 56295980 56427154 + MGP_AJ_P0037244 protein_coding protein_coding MGP_AJ_T0037245.1 MGP_AJ_G0020590.1 mouse_genomes_project 13 56297284 56615263 + MGP_AJ_P0037245 protein_coding protein_coding MGP_AJ_T0037315.1 MGP_AJ_G0020618.1 mouse_genomes_project 13 59959673 59971379 - MGP_AJ_P0037315 protein_coding protein_coding MGP_AJ_T0036377.1 MGP_AJ_G0020252.1 mouse_genomes_project 13 18611932 18612389 - MGP_AJ_P0036377 Hist1h2ae protein_coding protein_coding MGP_AJ_T0011348.1 MGP_AJ_G0009470.1 mouse_genomes_project 13 13718591 13718879 - Gm26098 misc_RNA misc_RNA MGP_AJ_T0011344.1 MGP_AJ_G0009466.1 mouse_genomes_project 13 6256374 6256622 - Gm23496 misc_RNA misc_RNA MGP_AJ_T0003447.1 MGP_AJ_G0003158.1 mouse_genomes_project 13 39012402 39019142 + Gm28564 antisense antisense MGP_AJ_T0037900.1 MGP_AJ_G0020826.1 mouse_genomes_project 13 96897909 96898390 - MGP_AJ_P0037900 1700024P04Rik protein_coding protein_coding MGP_AJ_T0036287.1 MGP_AJ_G0020207.1 mouse_genomes_project 13 13717261 14570271 - MGP_AJ_P0036287 Sugct protein_coding protein_coding MGP_AJ_T0036404.1 MGP_AJ_G0020267.1 mouse_genomes_project 13 18915022 18916851 - MGP_AJ_P0036404 Hist1h4i protein_coding protein_coding MGP_AJ_T0036908.1 MGP_AJ_G0020493.1 mouse_genomes_project 13 46838685 46865427 + MGP_AJ_P0036908 Omd protein_coding protein_coding MGP_AJ_T0003477.1 MGP_AJ_G0003177.1 mouse_genomes_project 13 76074735 76117429 + antisense antisense MGP_AJ_T0003478.1 MGP_AJ_G0003177.1 mouse_genomes_project 13 76076487 76077210 + antisense antisense MGP_AJ_T0003479.1 MGP_AJ_G0003177.1 mouse_genomes_project 13 76078605 76116409 + antisense antisense MGP_AJ_T0003480.1 MGP_AJ_G0003177.1 mouse_genomes_project 13 76078995 76118260 + antisense antisense MGP_AJ_T0003481.1 MGP_AJ_G0003177.1 mouse_genomes_project 13 76079174 76113082 + antisense antisense MGP_AJ_T0003482.1 MGP_AJ_G0003177.1 mouse_genomes_project 13 76079408 76158100 + antisense antisense MGP_AJ_T0003436.1 MGP_AJ_G0003150.1 mouse_genomes_project 13 21013243 21022705 + Gm11339 antisense antisense MGP_AJ_T0036741.1 MGP_AJ_G0020432.1 mouse_genomes_project 13 37857393 37861379 + MGP_AJ_P0036741 Gm9979 protein_coding protein_coding MGP_AJ_T0009963.1 MGP_AJ_G0008085.1 mouse_genomes_project 13 107848448 107848528 + Mir1904 miRNA miRNA MGP_AJ_T0037136.1 MGP_AJ_G0020554.1 mouse_genomes_project 13 52950526 52968230 - MGP_AJ_P0037136 Pdlim7 protein_coding nonsense_mediated_decay MGP_AJ_T0037137.1 MGP_AJ_G0020554.1 mouse_genomes_project 13 52952303 52968226 - Pdlim7 protein_coding retained_intron MGP_AJ_T0037138.1 MGP_AJ_G0020554.1 mouse_genomes_project 13 52953221 52961205 - MGP_AJ_P0037138 Pdlim7 protein_coding unknown_likely_coding MGP_AJ_T0037139.1 MGP_AJ_G0020554.1 mouse_genomes_project 13 52953225 52968229 - Pdlim7 protein_coding retained_intron MGP_AJ_T0037140.1 MGP_AJ_G0020554.1 mouse_genomes_project 13 52953229 52968238 - MGP_AJ_P0037140 Pdlim7 protein_coding protein_coding MGP_AJ_T0037141.1 MGP_AJ_G0020554.1 mouse_genomes_project 13 52961564 52968230 - MGP_AJ_P0037141 Pdlim7 protein_coding protein_coding MGP_AJ_T0037142.1 MGP_AJ_G0020554.1 mouse_genomes_project 13 52961565 52968226 - MGP_AJ_P0037142 Pdlim7 protein_coding protein_coding MGP_AJ_T0037143.1 MGP_AJ_G0020554.1 mouse_genomes_project 13 52961565 52968230 - MGP_AJ_P0037143 Pdlim7 protein_coding protein_coding MGP_AJ_T0037144.1 MGP_AJ_G0020554.1 mouse_genomes_project 13 52962343 52963812 - Pdlim7 protein_coding retained_intron MGP_AJ_T0037145.1 MGP_AJ_G0020554.1 mouse_genomes_project 13 52963024 52968468 - MGP_AJ_P0037145 Pdlim7 protein_coding protein_coding MGP_AJ_T0037146.1 MGP_AJ_G0020554.1 mouse_genomes_project 13 52963601 52968213 - Pdlim7 protein_coding retained_intron MGP_AJ_T0037147.1 MGP_AJ_G0020554.1 mouse_genomes_project 13 52963757 52967501 - MGP_AJ_P0037147 Pdlim7 protein_coding protein_coding MGP_AJ_T0100721.1 MGP_AJ_G0038687.1 mouse_genomes_project 13 28488434 28488549 + Gm22330 snoRNA snoRNA MGP_AJ_T0006637.1 MGP_AJ_G0005487.1 mouse_genomes_project 13 97313794 97318654 - lincRNA lincRNA MGP_AJ_T0036265.1 MGP_AJ_G0020199.1 mouse_genomes_project 13 10945458 10956305 - MGP_AJ_P0036265 Ggps1 protein_coding protein_coding MGP_AJ_T0036354.1 MGP_AJ_G0020235.1 mouse_genomes_project 13 18334534 18341107 + MGP_AJ_P0036354 Zkscan4 protein_coding protein_coding MGP_AJ_T0037756.1 MGP_AJ_G0020773.1 mouse_genomes_project 13 90448528 90543666 + MGP_AJ_P0037756 Serinc5 protein_coding protein_coding MGP_AJ_T0037504.1 MGP_AJ_G0020702.1 mouse_genomes_project 13 71357604 71399494 + MGP_AJ_P0037504 Slc6a3 protein_coding protein_coding MGP_AJ_T0003455.1 MGP_AJ_G0003166.1 mouse_genomes_project 13 53237829 53242491 - antisense antisense MGP_AJ_T0003456.1 MGP_AJ_G0003166.1 mouse_genomes_project 13 53238633 53242476 - antisense antisense MGP_AJ_T0003457.1 MGP_AJ_G0003166.1 mouse_genomes_project 13 53238640 53242502 - antisense antisense MGP_AJ_T0036352.1 MGP_AJ_G0020233.1 mouse_genomes_project 13 18323159 18324622 - MGP_AJ_P0036352 Nkapl protein_coding protein_coding MGP_AJ_T0037188.1 MGP_AJ_G0020575.1 mouse_genomes_project 13 54012180 54018257 - MGP_AJ_P0037188 Lect2 protein_coding protein_coding MGP_AJ_T0037462.1 MGP_AJ_G0020683.1 mouse_genomes_project 13 66345740 66375050 - MGP_AJ_P0037462 Mtrr protein_coding protein_coding MGP_AJ_T0038105.1 MGP_AJ_G0020882.1 mouse_genomes_project 13 109388745 109455267 - MGP_AJ_P0038105 Gpbp1 protein_coding protein_coding MGP_AJ_T0038106.1 MGP_AJ_G0020882.1 mouse_genomes_project 13 109388997 109455184 - MGP_AJ_P0038106 Gpbp1 protein_coding protein_coding MGP_AJ_T0038107.1 MGP_AJ_G0020882.1 mouse_genomes_project 13 109389223 109452767 - MGP_AJ_P0038107 Gpbp1 protein_coding nonsense_mediated_decay MGP_AJ_T0038108.1 MGP_AJ_G0020882.1 mouse_genomes_project 13 109401253 109416633 - Gpbp1 protein_coding processed_transcript MGP_AJ_T0038109.1 MGP_AJ_G0020882.1 mouse_genomes_project 13 109403854 109416592 - Gpbp1 protein_coding processed_transcript MGP_AJ_T0038110.1 MGP_AJ_G0020882.1 mouse_genomes_project 13 109403924 109416633 - Gpbp1 protein_coding retained_intron MGP_AJ_T0006527.1 MGP_AJ_G0005412.1 mouse_genomes_project 13 21428005 21437509 - Gm11345 lincRNA lincRNA MGP_AJ_T0037750.1 MGP_AJ_G0020770.1 mouse_genomes_project 13 90289095 90327069 - MGP_AJ_P0037750 Fam151b protein_coding protein_coding MGP_AJ_T0037292.1 MGP_AJ_G0020599.1 mouse_genomes_project 13 57249805 57266817 - MGP_AJ_P0037292 protein_coding protein_coding MGP_AJ_T0037293.1 MGP_AJ_G0020599.1 mouse_genomes_project 13 57254846 57266783 - protein_coding retained_intron MGP_AJ_T0038152.1 MGP_AJ_G0020898.1 mouse_genomes_project 13 111077370 111098224 - MGP_AJ_P0038152 protein_coding protein_coding MGP_AJ_T0036403.1 MGP_AJ_G0020266.1 mouse_genomes_project 13 18910229 18910732 + MGP_AJ_P0036403 Hist1h2bk protein_coding protein_coding MGP_AJ_T0036162.1 MGP_AJ_G0020172.1 mouse_genomes_project 13 4642765 4648541 - MGP_AJ_P0036162 protein_coding protein_coding MGP_AJ_T0009962.1 MGP_AJ_G0008084.1 mouse_genomes_project 13 107260309 107260390 + Mir582 miRNA miRNA MGP_AJ_T0009943.1 MGP_AJ_G0008065.1 mouse_genomes_project 13 58035512 58035656 - Gm25000 miRNA miRNA MGP_AJ_T0036292.1 MGP_AJ_G0020212.1 mouse_genomes_project 13 15006113 15283012 - MGP_AJ_P0036292 Pou6f2 protein_coding protein_coding MGP_AJ_T0036293.1 MGP_AJ_G0020212.1 mouse_genomes_project 13 15010098 15283012 - MGP_AJ_P0036293 Pou6f2 protein_coding protein_coding MGP_AJ_T0036294.1 MGP_AJ_G0020212.1 mouse_genomes_project 13 15010129 15063207 - MGP_AJ_P0036294 Pou6f2 protein_coding nonsense_mediated_decay MGP_AJ_T0036295.1 MGP_AJ_G0020212.1 mouse_genomes_project 13 15027419 15077149 - Pou6f2 protein_coding processed_transcript MGP_AJ_T0036296.1 MGP_AJ_G0020212.1 mouse_genomes_project 13 15027419 15063212 - MGP_AJ_P0036296 Pou6f2 protein_coding protein_coding MGP_AJ_T0036297.1 MGP_AJ_G0020212.1 mouse_genomes_project 13 15036732 15283012 - Pou6f2 protein_coding processed_transcript MGP_AJ_T0012959.1 MGP_AJ_G0011054.1 mouse_genomes_project 13 91112111 91115124 + processed_pseudogene processed_pseudogene MGP_AJ_T0037086.1 MGP_AJ_G0020538.1 mouse_genomes_project 13 52466921 52544425 - MGP_AJ_P0037086 Uimc1 protein_coding protein_coding MGP_AJ_T0037087.1 MGP_AJ_G0020538.1 mouse_genomes_project 13 52466921 52544420 - MGP_AJ_P0037087 Uimc1 protein_coding protein_coding MGP_AJ_T0037088.1 MGP_AJ_G0020538.1 mouse_genomes_project 13 52467236 52544379 - MGP_AJ_P0037088 Uimc1 protein_coding nonsense_mediated_decay MGP_AJ_T0037089.1 MGP_AJ_G0020538.1 mouse_genomes_project 13 52470573 52544425 - MGP_AJ_P0037089 Uimc1 protein_coding protein_coding MGP_AJ_T0037090.1 MGP_AJ_G0020538.1 mouse_genomes_project 13 52471277 52538467 - MGP_AJ_P0037090 Uimc1 protein_coding unknown_likely_coding MGP_AJ_T0037091.1 MGP_AJ_G0020538.1 mouse_genomes_project 13 52518137 52544424 - Uimc1 protein_coding retained_intron MGP_AJ_T0037092.1 MGP_AJ_G0020538.1 mouse_genomes_project 13 52528802 52537779 - Uimc1 protein_coding retained_intron MGP_AJ_T0037166.1 MGP_AJ_G0020565.1 mouse_genomes_project 13 53242564 53266966 + MGP_AJ_P0037166 Catsper3 protein_coding protein_coding MGP_AJ_T0037167.1 MGP_AJ_G0020565.1 mouse_genomes_project 13 53242575 53266997 + MGP_AJ_P0037167 Catsper3 protein_coding protein_coding MGP_AJ_T0036459.1 MGP_AJ_G0020312.1 mouse_genomes_project 13 20804835 20805455 + MGP_AJ_P0036459 Hist1h3b protein_coding protein_coding MGP_AJ_T0100741.1 MGP_AJ_G0038707.1 mouse_genomes_project 13 74529652 74529784 - Gm24519 snoRNA snoRNA MGP_AJ_T0009921.1 MGP_AJ_G0008043.1 mouse_genomes_project 13 18983138 18983232 - Gm26300 miRNA miRNA MGP_AJ_T0037417.1 MGP_AJ_G0020656.1 mouse_genomes_project 13 64915587 64934187 - MGP_AJ_P0037417 Zfp458 protein_coding protein_coding MGP_AJ_T0036367.1 MGP_AJ_G0020243.1 mouse_genomes_project 13 18516403 18517357 - MGP_AJ_P0036367 Olfr1361 protein_coding protein_coding MGP_AJ_T0006575.1 MGP_AJ_G0005446.1 mouse_genomes_project 13 45515020 45516489 - A330048O09Rik lincRNA lincRNA MGP_AJ_T0037853.1 MGP_AJ_G0020808.1 mouse_genomes_project 13 94780824 94807088 + MGP_AJ_P0037853 Gcnt4 protein_coding protein_coding MGP_AJ_T0038038.1 MGP_AJ_G0020865.1 mouse_genomes_project 13 103082015 103227496 - MGP_AJ_P0038038 Rnf180 protein_coding unknown_likely_coding MGP_AJ_T0038039.1 MGP_AJ_G0020865.1 mouse_genomes_project 13 103101043 103227496 - MGP_AJ_P0038039 Rnf180 protein_coding protein_coding MGP_AJ_T0036384.1 MGP_AJ_G0020258.1 mouse_genomes_project 13 18645249 18701382 + MGP_AJ_P0036384 Hist1h2br protein_coding protein_coding MGP_AJ_T0036385.1 MGP_AJ_G0020258.1 mouse_genomes_project 13 18645261 18702247 + MGP_AJ_P0036385 Hist1h2br protein_coding protein_coding MGP_AJ_T0037871.1 MGP_AJ_G0020814.1 mouse_genomes_project 13 95103786 95115730 + MGP_AJ_P0037871 Enc1 protein_coding protein_coding MGP_AJ_T0037952.1 MGP_AJ_G0020842.1 mouse_genomes_project 13 98609586 98638528 + MGP_AJ_P0037952 Ccdc125 protein_coding protein_coding MGP_AJ_T0037953.1 MGP_AJ_G0020842.1 mouse_genomes_project 13 98609586 98638528 + MGP_AJ_P0037953 Ccdc125 protein_coding protein_coding MGP_AJ_T0038153.1 MGP_AJ_G0020899.1 mouse_genomes_project 13 111169666 111230467 - MGP_AJ_P0038153 Gzmk protein_coding protein_coding MGP_AJ_T0038154.1 MGP_AJ_G0020899.1 mouse_genomes_project 13 111169696 111178967 - MGP_AJ_P0038154 Gzmk protein_coding protein_coding MGP_AJ_T0038155.1 MGP_AJ_G0020899.1 mouse_genomes_project 13 111169850 111178991 - MGP_AJ_P0038155 Gzmk protein_coding nonsense_mediated_decay MGP_AJ_T0037553.1 MGP_AJ_G0020721.1 mouse_genomes_project 13 72188146 72192575 - MGP_AJ_P0037553 Lrrc14b protein_coding protein_coding MGP_AJ_T0037656.1 MGP_AJ_G0020749.1 mouse_genomes_project 13 83077432 83101768 + MGP_AJ_P0037656 Ccnh protein_coding protein_coding MGP_AJ_T0037657.1 MGP_AJ_G0020749.1 mouse_genomes_project 13 83077459 83090463 + MGP_AJ_P0037657 Ccnh protein_coding protein_coding MGP_AJ_T0037658.1 MGP_AJ_G0020749.1 mouse_genomes_project 13 83077472 83100652 + MGP_AJ_P0037658 Ccnh protein_coding protein_coding MGP_AJ_T0037659.1 MGP_AJ_G0020749.1 mouse_genomes_project 13 83077501 83100951 + MGP_AJ_P0037659 Ccnh protein_coding protein_coding MGP_AJ_T0037660.1 MGP_AJ_G0020749.1 mouse_genomes_project 13 83090450 83111523 + MGP_AJ_P0037660 Ccnh protein_coding protein_coding MGP_AJ_T0037661.1 MGP_AJ_G0020749.1 mouse_genomes_project 13 83099362 83101150 + Ccnh protein_coding processed_transcript MGP_AJ_T0037662.1 MGP_AJ_G0020749.1 mouse_genomes_project 13 83099824 83100946 + Ccnh protein_coding retained_intron MGP_AJ_T0099460.1 MGP_AJ_G0037426.1 mouse_genomes_project 13 42660484 42660591 - Gm23387 snRNA snRNA MGP_AJ_T0009919.1 MGP_AJ_G0008041.1 mouse_genomes_project 13 18763891 18764023 - Mir1983 miRNA miRNA MGP_AJ_T0036276.1 MGP_AJ_G0020201.1 mouse_genomes_project 13 11117620 11418661 - MGP_AJ_P0036276 Hecw1 protein_coding protein_coding MGP_AJ_T0006606.1 MGP_AJ_G0005466.1 mouse_genomes_project 13 70440938 70441763 - Gm20554 lincRNA lincRNA MGP_AJ_T0006638.1 MGP_AJ_G0005488.1 mouse_genomes_project 13 97424009 97428966 + Gm26559 lincRNA lincRNA MGP_AJ_T0037971.1 MGP_AJ_G0020848.1 mouse_genomes_project 13 99629641 99720124 - MGP_AJ_P0037971 Pik3r1 protein_coding protein_coding MGP_AJ_T0037972.1 MGP_AJ_G0020848.1 mouse_genomes_project 13 99632742 99642272 - MGP_AJ_P0037972 Pik3r1 protein_coding protein_coding MGP_AJ_T0037973.1 MGP_AJ_G0020848.1 mouse_genomes_project 13 99636652 99642218 - MGP_AJ_P0037973 Pik3r1 protein_coding protein_coding MGP_AJ_T0037974.1 MGP_AJ_G0020848.1 mouse_genomes_project 13 99638110 99644572 - MGP_AJ_P0037974 Pik3r1 protein_coding protein_coding MGP_AJ_T0037975.1 MGP_AJ_G0020848.1 mouse_genomes_project 13 99639776 99641985 - Pik3r1 protein_coding retained_intron MGP_AJ_T0037976.1 MGP_AJ_G0020848.1 mouse_genomes_project 13 99651420 99652076 - Pik3r1 protein_coding retained_intron MGP_AJ_T0037977.1 MGP_AJ_G0020848.1 mouse_genomes_project 13 99706634 99720120 - Pik3r1 protein_coding retained_intron MGP_AJ_T0036163.1 MGP_AJ_G0020173.1 mouse_genomes_project 13 4823201 5381286 + MGP_AJ_P0036163 Adarb2 protein_coding protein_coding MGP_AJ_T0036164.1 MGP_AJ_G0020173.1 mouse_genomes_project 13 4823243 4966229 + MGP_AJ_P0036164 Adarb2 protein_coding protein_coding MGP_AJ_T0036165.1 MGP_AJ_G0020173.1 mouse_genomes_project 13 4823248 5382959 + MGP_AJ_P0036165 Adarb2 protein_coding protein_coding MGP_AJ_T0036166.1 MGP_AJ_G0020173.1 mouse_genomes_project 13 5169476 5377158 + MGP_AJ_P0036166 Adarb2 protein_coding protein_coding MGP_AJ_T0102315.1 MGP_AJ_G0040057.1 mouse_genomes_project 13 30024912 30028124 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0100744.1 MGP_AJ_G0038710.1 mouse_genomes_project 13 79939081 79939212 + Gm24295 snoRNA snoRNA MGP_AJ_T0003510.1 MGP_AJ_G0003194.1 mouse_genomes_project 13 116759400 116786629 - Gm16263 antisense antisense MGP_AJ_T0038138.1 MGP_AJ_G0020889.1 mouse_genomes_project 13 110630668 110710124 + MGP_AJ_P0038138 Slc38a9 protein_coding protein_coding MGP_AJ_T0036251.1 MGP_AJ_G0020197.1 mouse_genomes_project 13 10853562 10854936 - MGP_AJ_P0036251 Gm18856 protein_coding protein_coding MGP_AJ_T0036420.1 MGP_AJ_G0020283.1 mouse_genomes_project 13 19529472 19530423 - MGP_AJ_P0036420 Vmn1r205 protein_coding protein_coding MGP_AJ_T0000872.1 MGP_AJ_G0000807.1 mouse_genomes_project 13 16310253 16312569 - TEC TEC MGP_AJ_T0100748.1 MGP_AJ_G0038714.1 mouse_genomes_project 13 93160728 93160866 + Snora47 snoRNA snoRNA MGP_AJ_T0036538.1 MGP_AJ_G0020340.1 mouse_genomes_project 13 24173161 24190696 + MGP_AJ_P0036538 protein_coding protein_coding MGP_AJ_T0036768.1 MGP_AJ_G0020446.1 mouse_genomes_project 13 38930647 39016862 - MGP_AJ_P0036768 Adtrp protein_coding protein_coding MGP_AJ_T0036769.1 MGP_AJ_G0020446.1 mouse_genomes_project 13 38931632 39017058 - MGP_AJ_P0036769 Adtrp protein_coding protein_coding MGP_AJ_T0036770.1 MGP_AJ_G0020446.1 mouse_genomes_project 13 38932089 39016990 - MGP_AJ_P0036770 Adtrp protein_coding protein_coding MGP_AJ_T0036771.1 MGP_AJ_G0020446.1 mouse_genomes_project 13 38945010 38997641 - MGP_AJ_P0036771 Adtrp protein_coding protein_coding MGP_AJ_T0003442.1 MGP_AJ_G0003155.1 mouse_genomes_project 13 31098362 31100979 + 1110046J04Rik antisense antisense MGP_AJ_T0003443.1 MGP_AJ_G0003155.1 mouse_genomes_project 13 31098615 31099428 + 1110046J04Rik antisense antisense MGP_AJ_T0003444.1 MGP_AJ_G0003155.1 mouse_genomes_project 13 31098827 31121038 + 1110046J04Rik antisense antisense MGP_AJ_T0037793.1 MGP_AJ_G0020789.1 mouse_genomes_project 13 92704979 92714499 + MGP_AJ_P0037793 Otp protein_coding protein_coding MGP_AJ_T0037794.1 MGP_AJ_G0020789.1 mouse_genomes_project 13 92711976 92712931 + Otp protein_coding processed_transcript MGP_AJ_T0038041.1 MGP_AJ_G0020867.1 mouse_genomes_project 13 104727755 104876491 - MGP_AJ_P0038041 Ipo11 protein_coding protein_coding MGP_AJ_T0038042.1 MGP_AJ_G0020867.1 mouse_genomes_project 13 104727755 104864604 - MGP_AJ_P0038042 Ipo11 protein_coding protein_coding MGP_AJ_T0038043.1 MGP_AJ_G0020867.1 mouse_genomes_project 13 104727763 104780899 - MGP_AJ_P0038043 Ipo11 protein_coding nonsense_mediated_decay MGP_AJ_T0038044.1 MGP_AJ_G0020867.1 mouse_genomes_project 13 104744906 104791468 - Ipo11 protein_coding retained_intron MGP_AJ_T0038045.1 MGP_AJ_G0020867.1 mouse_genomes_project 13 104745011 104769761 - Ipo11 protein_coding retained_intron MGP_AJ_T0038046.1 MGP_AJ_G0020867.1 mouse_genomes_project 13 104767153 104780730 - Ipo11 protein_coding processed_transcript MGP_AJ_T0038047.1 MGP_AJ_G0020867.1 mouse_genomes_project 13 104767155 104769749 - Ipo11 protein_coding processed_transcript MGP_AJ_T0038048.1 MGP_AJ_G0020867.1 mouse_genomes_project 13 104775552 104781933 - Ipo11 protein_coding retained_intron MGP_AJ_T0038049.1 MGP_AJ_G0020867.1 mouse_genomes_project 13 104794103 104876478 - Ipo11 protein_coding retained_intron MGP_AJ_T0038193.1 MGP_AJ_G0020919.1 mouse_genomes_project 13 117370988 117461937 - MGP_AJ_P0038193 Nnt protein_coding protein_coding MGP_AJ_T0038194.1 MGP_AJ_G0020919.1 mouse_genomes_project 13 117370988 117461937 - MGP_AJ_P0038194 Nnt protein_coding protein_coding MGP_AJ_T0038195.1 MGP_AJ_G0020919.1 mouse_genomes_project 13 117371062 117461977 - MGP_AJ_P0038195 Nnt protein_coding unknown_likely_coding MGP_AJ_T0038196.1 MGP_AJ_G0020919.1 mouse_genomes_project 13 117390088 117461937 - MGP_AJ_P0038196 Nnt protein_coding protein_coding MGP_AJ_T0038197.1 MGP_AJ_G0020919.1 mouse_genomes_project 13 117440824 117461937 - Nnt protein_coding processed_transcript MGP_AJ_T0038198.1 MGP_AJ_G0020919.1 mouse_genomes_project 13 117446613 117461937 - Nnt protein_coding processed_transcript MGP_AJ_T0037788.1 MGP_AJ_G0020785.1 mouse_genomes_project 13 92027689 92107055 - MGP_AJ_P0037788 Scamp1 protein_coding protein_coding MGP_AJ_T0037789.1 MGP_AJ_G0020785.1 mouse_genomes_project 13 92045752 92087377 - MGP_AJ_P0037789 Scamp1 protein_coding protein_coding MGP_AJ_T0036794.1 MGP_AJ_G0020453.1 mouse_genomes_project 13 40563169 40567593 + MGP_AJ_P0036794 Nol7 protein_coding protein_coding MGP_AJ_T0012884.1 MGP_AJ_G0010979.1 mouse_genomes_project 13 18234745 18235185 - processed_pseudogene processed_pseudogene MGP_AJ_T0102310.1 MGP_AJ_G0040052.1 mouse_genomes_project 13 20277464 20278062 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0036476.1 MGP_AJ_G0020323.1 mouse_genomes_project 13 20990653 20991043 + MGP_AJ_P0036476 Hist1h2aa protein_coding protein_coding MGP_AJ_T0036380.1 MGP_AJ_G0020255.1 mouse_genomes_project 13 18638334 18639861 - MGP_AJ_P0036380 Hist1h3i protein_coding protein_coding MGP_AJ_T0098578.1 MGP_AJ_G0036562.1 mouse_genomes_project 13 101363140 101363245 + n-R5s56 rRNA rRNA MGP_AJ_T0036983.1 MGP_AJ_G0020514.1 mouse_genomes_project 13 50535251 50712115 - MGP_AJ_P0036983 Ror2 protein_coding protein_coding MGP_AJ_T0036984.1 MGP_AJ_G0020514.1 mouse_genomes_project 13 50535256 50712690 - MGP_AJ_P0036984 Ror2 protein_coding protein_coding MGP_AJ_T0036985.1 MGP_AJ_G0020514.1 mouse_genomes_project 13 50558484 50702268 - Ror2 protein_coding processed_transcript MGP_AJ_T0012951.1 MGP_AJ_G0011046.1 mouse_genomes_project 13 77979623 77980783 - processed_pseudogene processed_pseudogene MGP_AJ_T0006607.1 MGP_AJ_G0005467.1 mouse_genomes_project 13 77170492 77182811 + Gm29318 lincRNA lincRNA MGP_AJ_T0100752.1 MGP_AJ_G0038718.1 mouse_genomes_project 13 104936301 104936367 - Gm24431 snoRNA snoRNA MGP_AJ_T0038072.1 MGP_AJ_G0020874.1 mouse_genomes_project 13 106165057 106243280 + MGP_AJ_P0038072 Elovl7 protein_coding protein_coding MGP_AJ_T0036756.1 MGP_AJ_G0020438.1 mouse_genomes_project 13 38260691 38269245 - MGP_AJ_P0036756 Gcm2 protein_coding protein_coding MGP_AJ_T0037539.1 MGP_AJ_G0020718.1 mouse_genomes_project 13 72130760 72145726 - MGP_AJ_P0037539 Pdcd6 protein_coding protein_coding MGP_AJ_T0102303.1 MGP_AJ_G0040045.1 mouse_genomes_project 13 19961521 19961758 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0099440.1 MGP_AJ_G0037406.1 mouse_genomes_project 13 10981007 10981114 + Gm26129 snRNA snRNA MGP_AJ_T0009967.1 MGP_AJ_G0008089.1 mouse_genomes_project 13 112558426 112558532 + Gm25950 miRNA miRNA MGP_AJ_T0012953.1 MGP_AJ_G0011048.1 mouse_genomes_project 13 82246946 82247911 - processed_pseudogene processed_pseudogene MGP_AJ_T0036453.1 MGP_AJ_G0020308.1 mouse_genomes_project 13 20743039 20743765 + MGP_AJ_P0036453 Hist1h1t protein_coding protein_coding MGP_AJ_T0100739.1 MGP_AJ_G0038705.1 mouse_genomes_project 13 73842661 73842791 + Gm24163 snoRNA snoRNA MGP_AJ_T0036598.1 MGP_AJ_G0020371.1 mouse_genomes_project 13 27893017 27910719 + MGP_AJ_P0036598 Irf4 protein_coding protein_coding MGP_AJ_T0036599.1 MGP_AJ_G0020371.1 mouse_genomes_project 13 27893017 27910719 + MGP_AJ_P0036599 Irf4 protein_coding protein_coding MGP_AJ_T0006657.1 MGP_AJ_G0005502.1 mouse_genomes_project 13 117747876 117749411 + 1700074H08Rik lincRNA lincRNA MGP_AJ_T0036721.1 MGP_AJ_G0020422.1 mouse_genomes_project 13 35177485 35209150 - MGP_AJ_P0036721 Cage1 protein_coding protein_coding MGP_AJ_T0036722.1 MGP_AJ_G0020422.1 mouse_genomes_project 13 35177487 35209164 - MGP_AJ_P0036722 Cage1 protein_coding protein_coding MGP_AJ_T0036723.1 MGP_AJ_G0020422.1 mouse_genomes_project 13 35193119 35209295 - MGP_AJ_P0036723 Cage1 protein_coding protein_coding MGP_AJ_T0036724.1 MGP_AJ_G0020422.1 mouse_genomes_project 13 35195493 35209164 - MGP_AJ_P0036724 Cage1 protein_coding protein_coding MGP_AJ_T0003453.1 MGP_AJ_G0003164.1 mouse_genomes_project 13 52202977 52210128 - Gm16249 antisense antisense MGP_AJ_T0006604.1 MGP_AJ_G0005465.1 mouse_genomes_project 13 67788190 67815112 - 1700084F23Rik lincRNA lincRNA MGP_AJ_T0006605.1 MGP_AJ_G0005465.1 mouse_genomes_project 13 67795757 67814596 - 1700084F23Rik lincRNA lincRNA MGP_AJ_T0037359.1 MGP_AJ_G0020626.1 mouse_genomes_project 13 61741540 61777110 - MGP_AJ_P0037359 Hsd17b3 protein_coding protein_coding MGP_AJ_T0037360.1 MGP_AJ_G0020626.1 mouse_genomes_project 13 61741540 61777125 - MGP_AJ_P0037360 Hsd17b3 protein_coding protein_coding MGP_AJ_T0003448.1 MGP_AJ_G0003159.1 mouse_genomes_project 13 39953159 39958593 - Gm15810 antisense antisense MGP_AJ_T0036444.1 MGP_AJ_G0020301.1 mouse_genomes_project 13 20569063 20569854 + MGP_AJ_P0036444 Hist1h4h protein_coding protein_coding MGP_AJ_T0006559.1 MGP_AJ_G0005434.1 mouse_genomes_project 13 34615682 34616679 - Gm29458 lincRNA lincRNA MGP_AJ_T0009960.1 MGP_AJ_G0008082.1 mouse_genomes_project 13 96454732 96454834 + Gm22698 miRNA miRNA MGP_AJ_T0003499.1 MGP_AJ_G0003186.1 mouse_genomes_project 13 98016295 98017840 - BC001981 antisense antisense MGP_AJ_T0003500.1 MGP_AJ_G0003186.1 mouse_genomes_project 13 98017535 98017838 - BC001981 antisense antisense MGP_AJ_T0006608.1 MGP_AJ_G0005468.1 mouse_genomes_project 13 77836655 78013408 - lincRNA lincRNA MGP_AJ_T0037306.1 MGP_AJ_G0020610.1 mouse_genomes_project 13 58432036 58435281 - MGP_AJ_P0037306 Tpbpa protein_coding protein_coding MGP_AJ_T0012931.1 MGP_AJ_G0011026.1 mouse_genomes_project 13 52266711 52266967 - processed_pseudogene processed_pseudogene MGP_AJ_T0037498.1 MGP_AJ_G0020701.1 mouse_genomes_project 13 71287959 71337607 + MGP_AJ_P0037498 Lpcat1 protein_coding protein_coding MGP_AJ_T0037499.1 MGP_AJ_G0020701.1 mouse_genomes_project 13 71287959 71337607 + MGP_AJ_P0037499 Lpcat1 protein_coding nonsense_mediated_decay MGP_AJ_T0037500.1 MGP_AJ_G0020701.1 mouse_genomes_project 13 71287993 71336297 + MGP_AJ_P0037500 Lpcat1 protein_coding nonsense_mediated_decay MGP_AJ_T0037501.1 MGP_AJ_G0020701.1 mouse_genomes_project 13 71288185 71322213 + Lpcat1 protein_coding retained_intron MGP_AJ_T0037502.1 MGP_AJ_G0020701.1 mouse_genomes_project 13 71324042 71335026 + Lpcat1 protein_coding retained_intron MGP_AJ_T0037503.1 MGP_AJ_G0020701.1 mouse_genomes_project 13 71332133 71332791 + Lpcat1 protein_coding retained_intron MGP_AJ_T0037625.1 MGP_AJ_G0020746.1 mouse_genomes_project 13 79682927 79696780 + MGP_AJ_P0037625 Cetn3 protein_coding protein_coding MGP_AJ_T0037495.1 MGP_AJ_G0020699.1 mouse_genomes_project 13 71136849 71145510 - MGP_AJ_P0037495 Ndufs6 protein_coding protein_coding MGP_AJ_T0037496.1 MGP_AJ_G0020699.1 mouse_genomes_project 13 71136854 71145420 - MGP_AJ_P0037496 Ndufs6 protein_coding nonsense_mediated_decay MGP_AJ_T0037573.1 MGP_AJ_G0020734.1 mouse_genomes_project 13 74033755 74125743 + MGP_AJ_P0037573 Ttc37 protein_coding unknown_likely_coding MGP_AJ_T0036797.1 MGP_AJ_G0020456.1 mouse_genomes_project 13 40783185 40840892 + MGP_AJ_P0036797 Rnf182 protein_coding protein_coding MGP_AJ_T0036798.1 MGP_AJ_G0020456.1 mouse_genomes_project 13 40783458 40838013 + MGP_AJ_P0036798 Rnf182 protein_coding protein_coding MGP_AJ_T0036460.1 MGP_AJ_G0020313.1 mouse_genomes_project 13 20809574 20810565 + MGP_AJ_P0036460 Hist1h4b protein_coding protein_coding MGP_AJ_T0036799.1 MGP_AJ_G0020457.1 mouse_genomes_project 13 40955517 40973551 + MGP_AJ_P0036799 Cd83 protein_coding protein_coding MGP_AJ_T0036120.1 MGP_AJ_G0020157.1 mouse_genomes_project 13 531772 536432 - MGP_AJ_P0036120 Ucn3 protein_coding protein_coding MGP_AJ_T0037123.1 MGP_AJ_G0020551.1 mouse_genomes_project 13 52897015 52911241 + MGP_AJ_P0037123 Grk6 protein_coding protein_coding MGP_AJ_T0037124.1 MGP_AJ_G0020551.1 mouse_genomes_project 13 52897015 52914755 + MGP_AJ_P0037124 Grk6 protein_coding protein_coding MGP_AJ_T0037125.1 MGP_AJ_G0020551.1 mouse_genomes_project 13 52897190 52911501 + MGP_AJ_P0037125 Grk6 protein_coding unknown_likely_coding MGP_AJ_T0037430.1 MGP_AJ_G0020667.1 mouse_genomes_project 13 65171148 65184461 - MGP_AJ_P0037430 Zfp874b protein_coding protein_coding MGP_AJ_T0036406.1 MGP_AJ_G0020269.1 mouse_genomes_project 13 18961386 18962013 - MGP_AJ_P0036406 protein_coding protein_coding MGP_AJ_T0036938.1 MGP_AJ_G0020503.1 mouse_genomes_project 13 48821545 48835721 + MGP_AJ_P0036938 S1pr3 protein_coding protein_coding MGP_AJ_T0037795.1 MGP_AJ_G0020790.1 mouse_genomes_project 13 92804936 92843549 + MGP_AJ_P0037795 Wdr41 protein_coding protein_coding MGP_AJ_T0037796.1 MGP_AJ_G0020790.1 mouse_genomes_project 13 92804940 92852328 + MGP_AJ_P0037796 Wdr41 protein_coding protein_coding MGP_AJ_T0037797.1 MGP_AJ_G0020790.1 mouse_genomes_project 13 92804940 92852327 + MGP_AJ_P0037797 Wdr41 protein_coding protein_coding MGP_AJ_T0037798.1 MGP_AJ_G0020790.1 mouse_genomes_project 13 92805030 92843495 + MGP_AJ_P0037798 Wdr41 protein_coding protein_coding MGP_AJ_T0037799.1 MGP_AJ_G0020790.1 mouse_genomes_project 13 92805030 92843495 + MGP_AJ_P0037799 Wdr41 protein_coding protein_coding MGP_AJ_T0037800.1 MGP_AJ_G0020790.1 mouse_genomes_project 13 92805030 92843495 + MGP_AJ_P0037800 Wdr41 protein_coding protein_coding MGP_AJ_T0036871.1 MGP_AJ_G0020480.1 mouse_genomes_project 13 45907647 45911157 + MGP_AJ_P0036871 Barx1 protein_coding protein_coding MGP_AJ_T0036587.1 MGP_AJ_G0020366.1 mouse_genomes_project 13 27057525 27136638 - MGP_AJ_P0036587 E2f3 protein_coding protein_coding MGP_AJ_T0036588.1 MGP_AJ_G0020366.1 mouse_genomes_project 13 27069734 27135189 - MGP_AJ_P0036588 E2f3 protein_coding protein_coding MGP_AJ_T0006647.1 MGP_AJ_G0005496.1 mouse_genomes_project 13 109814765 109816280 + Gm15324 lincRNA lincRNA MGP_AJ_T0037889.1 MGP_AJ_G0020821.1 mouse_genomes_project 13 96378187 96380841 - MGP_AJ_P0037889 Gm10320 protein_coding protein_coding MGP_AJ_T0006587.1 MGP_AJ_G0005451.1 mouse_genomes_project 13 50831354 50842135 - Gm43262 lincRNA lincRNA MGP_AJ_T0038211.1 MGP_AJ_G0020925.1 mouse_genomes_project 13 117704308 117738261 + MGP_AJ_P0038211 Ccl28 protein_coding protein_coding MGP_AJ_T0037792.1 MGP_AJ_G0020788.1 mouse_genomes_project 13 92614410 92668789 + MGP_AJ_P0037792 Tbca protein_coding protein_coding MGP_AJ_T0017348.1 MGP_AJ_G0015227.1 mouse_genomes_project 13 25636823 25690291 - processed_transcript processed_transcript MGP_AJ_T0017349.1 MGP_AJ_G0015227.1 mouse_genomes_project 13 25637567 26057493 - processed_transcript processed_transcript MGP_AJ_T0017350.1 MGP_AJ_G0015227.1 mouse_genomes_project 13 25637567 25653383 - processed_transcript processed_transcript MGP_AJ_T0017351.1 MGP_AJ_G0015227.1 mouse_genomes_project 13 25637730 25685989 - processed_transcript processed_transcript MGP_AJ_T0017352.1 MGP_AJ_G0015227.1 mouse_genomes_project 13 25674625 25686148 - processed_transcript processed_transcript MGP_AJ_T0017353.1 MGP_AJ_G0015227.1 mouse_genomes_project 13 25730465 26055329 - processed_transcript processed_transcript MGP_AJ_T0017354.1 MGP_AJ_G0015227.1 mouse_genomes_project 13 25839884 26057217 - processed_transcript processed_transcript MGP_AJ_T0038208.1 MGP_AJ_G0020922.1 mouse_genomes_project 13 117546992 117548115 - MGP_AJ_P0038208 3110070M22Rik protein_coding protein_coding MGP_AJ_T0012896.1 MGP_AJ_G0010991.1 mouse_genomes_project 13 20310664 20310812 + processed_pseudogene processed_pseudogene MGP_AJ_T0000882.1 MGP_AJ_G0000816.1 mouse_genomes_project 13 65145512 65147346 + TEC TEC MGP_AJ_T0036378.1 MGP_AJ_G0020253.1 mouse_genomes_project 13 18612779 18613112 + MGP_AJ_P0036378 protein_coding protein_coding MGP_AJ_T0036555.1 MGP_AJ_G0020350.1 mouse_genomes_project 13 24571771 24579752 - MGP_AJ_P0036555 Prl8a8 protein_coding protein_coding MGP_AJ_T0036556.1 MGP_AJ_G0020350.1 mouse_genomes_project 13 24571875 24579750 - MGP_AJ_P0036556 Prl8a8 protein_coding protein_coding MGP_AJ_T0012899.1 MGP_AJ_G0010994.1 mouse_genomes_project 13 21253694 21254410 + processed_pseudogene processed_pseudogene MGP_AJ_T0012967.1 MGP_AJ_G0011062.1 mouse_genomes_project 13 109320345 109320589 + processed_pseudogene processed_pseudogene MGP_AJ_T0036425.1 MGP_AJ_G0020288.1 mouse_genomes_project 13 19976523 19977678 + MGP_AJ_P0036425 Vmn1r213 protein_coding protein_coding MGP_AJ_T0036241.1 MGP_AJ_G0020190.1 mouse_genomes_project 13 9211718 9259552 - MGP_AJ_P0036241 Gpr137b protein_coding protein_coding MGP_AJ_T0036242.1 MGP_AJ_G0020190.1 mouse_genomes_project 13 9218144 9259421 - MGP_AJ_P0036242 Gpr137b protein_coding unknown_likely_coding MGP_AJ_T0036428.1 MGP_AJ_G0020291.1 mouse_genomes_project 13 20061045 20061942 + MGP_AJ_P0036428 Vmn1r216 protein_coding protein_coding MGP_AJ_T0037405.1 MGP_AJ_G0020650.1 mouse_genomes_project 13 64693267 64713796 - MGP_AJ_P0037405 Zfp712 protein_coding protein_coding MGP_AJ_T0036524.1 MGP_AJ_G0020334.1 mouse_genomes_project 13 22025676 22078255 + MGP_AJ_P0036524 protein_coding unknown_likely_coding MGP_AJ_T0036525.1 MGP_AJ_G0020334.1 mouse_genomes_project 13 22043936 22050982 + protein_coding processed_transcript MGP_AJ_T0036526.1 MGP_AJ_G0020334.1 mouse_genomes_project 13 22067511 22078886 + MGP_AJ_P0036526 protein_coding protein_coding MGP_AJ_T0100715.1 MGP_AJ_G0038681.1 mouse_genomes_project 13 9179091 9179318 + Gm25483 snoRNA snoRNA MGP_AJ_T0006633.1 MGP_AJ_G0005483.1 mouse_genomes_project 13 96312812 96324333 - 2310005E17Rik lincRNA lincRNA MGP_AJ_T0036431.1 MGP_AJ_G0020294.1 mouse_genomes_project 13 20141388 20142493 + MGP_AJ_P0036431 Vmn1r219 protein_coding protein_coding MGP_AJ_T0000874.1 MGP_AJ_G0000809.1 mouse_genomes_project 13 35318729 35320627 - TEC TEC MGP_AJ_T0000875.1 MGP_AJ_G0000809.1 mouse_genomes_project 13 35320267 35320627 - TEC TEC MGP_AJ_T0036528.1 MGP_AJ_G0020336.1 mouse_genomes_project 13 22140818 22208269 + MGP_AJ_P0036528 Dcdc2a protein_coding protein_coding MGP_AJ_T0036529.1 MGP_AJ_G0020336.1 mouse_genomes_project 13 22141067 22306320 + MGP_AJ_P0036529 Dcdc2a protein_coding protein_coding MGP_AJ_T0036530.1 MGP_AJ_G0020336.1 mouse_genomes_project 13 22183145 22206154 + Dcdc2a protein_coding processed_transcript MGP_AJ_T0036531.1 MGP_AJ_G0020336.1 mouse_genomes_project 13 22281804 22300391 + Dcdc2a protein_coding processed_transcript MGP_AJ_T0037178.1 MGP_AJ_G0020568.1 mouse_genomes_project 13 53638528 53643695 - MGP_AJ_P0037178 Tifab protein_coding protein_coding MGP_AJ_T0036243.1 MGP_AJ_G0020191.1 mouse_genomes_project 13 10032732 10032993 - MGP_AJ_P0036243 Gm11360 protein_coding protein_coding MGP_AJ_T0037179.1 MGP_AJ_G0020569.1 mouse_genomes_project 13 53717905 53719562 - MGP_AJ_P0037179 Neurog1 protein_coding protein_coding MGP_AJ_T0036199.1 MGP_AJ_G0020180.1 mouse_genomes_project 13 5901344 6302289 + MGP_AJ_P0036199 Dip2c protein_coding protein_coding MGP_AJ_T0036200.1 MGP_AJ_G0020180.1 mouse_genomes_project 13 5901749 6299539 + MGP_AJ_P0036200 Dip2c protein_coding protein_coding MGP_AJ_T0036201.1 MGP_AJ_G0020180.1 mouse_genomes_project 13 5901798 6299539 + MGP_AJ_P0036201 Dip2c protein_coding protein_coding MGP_AJ_T0037559.1 MGP_AJ_G0020726.1 mouse_genomes_project 13 73021065 73064765 + MGP_AJ_P0037559 Pcsk1 protein_coding protein_coding MGP_AJ_T0037560.1 MGP_AJ_G0020726.1 mouse_genomes_project 13 73021155 73037845 + Pcsk1 protein_coding retained_intron MGP_AJ_T0000881.1 MGP_AJ_G0000815.1 mouse_genomes_project 13 61225676 61226691 - TEC TEC MGP_AJ_T0038190.1 MGP_AJ_G0020918.1 mouse_genomes_project 13 116734284 116860832 + Fgf10 protein_coding processed_transcript MGP_AJ_T0038191.1 MGP_AJ_G0020918.1 mouse_genomes_project 13 116734317 116853074 + Fgf10 protein_coding processed_transcript MGP_AJ_T0038192.1 MGP_AJ_G0020918.1 mouse_genomes_project 13 116785931 116863621 + MGP_AJ_P0038192 Fgf10 protein_coding protein_coding MGP_AJ_T0036969.1 MGP_AJ_G0020512.1 mouse_genomes_project 13 50261208 50356382 - MGP_AJ_P0036969 Auh protein_coding protein_coding MGP_AJ_T0036970.1 MGP_AJ_G0020512.1 mouse_genomes_project 13 50261208 50345989 - MGP_AJ_P0036970 Auh protein_coding nonsense_mediated_decay MGP_AJ_T0036971.1 MGP_AJ_G0020512.1 mouse_genomes_project 13 50266956 50356179 - MGP_AJ_P0036971 Auh protein_coding protein_coding MGP_AJ_T0036972.1 MGP_AJ_G0020512.1 mouse_genomes_project 13 50312635 50356369 - Auh protein_coding retained_intron MGP_AJ_T0036973.1 MGP_AJ_G0020512.1 mouse_genomes_project 13 50321984 50356373 - MGP_AJ_P0036973 Auh protein_coding protein_coding MGP_AJ_T0036974.1 MGP_AJ_G0020512.1 mouse_genomes_project 13 50322760 50350622 - Auh protein_coding processed_transcript MGP_AJ_T0036975.1 MGP_AJ_G0020512.1 mouse_genomes_project 13 50333814 50356375 - MGP_AJ_P0036975 Auh protein_coding protein_coding MGP_AJ_T0036976.1 MGP_AJ_G0020512.1 mouse_genomes_project 13 50335664 50350601 - Auh protein_coding processed_transcript MGP_AJ_T0036977.1 MGP_AJ_G0020512.1 mouse_genomes_project 13 50335675 50346025 - Auh protein_coding processed_transcript MGP_AJ_T0036978.1 MGP_AJ_G0020512.1 mouse_genomes_project 13 50336979 50356402 - MGP_AJ_P0036978 Auh protein_coding protein_coding MGP_AJ_T0036979.1 MGP_AJ_G0020512.1 mouse_genomes_project 13 50339605 50350625 - Auh protein_coding processed_transcript MGP_AJ_T0036980.1 MGP_AJ_G0020512.1 mouse_genomes_project 13 50345548 50350617 - Auh protein_coding retained_intron MGP_AJ_T0036981.1 MGP_AJ_G0020512.1 mouse_genomes_project 13 50355208 50356373 - Auh protein_coding processed_transcript MGP_AJ_T0012922.1 MGP_AJ_G0011017.1 mouse_genomes_project 13 30266048 30266855 - processed_pseudogene processed_pseudogene MGP_AJ_T0099466.1 MGP_AJ_G0037432.1 mouse_genomes_project 13 77335605 77335712 + Gm24863 snRNA snRNA MGP_AJ_T0009934.1 MGP_AJ_G0008056.1 mouse_genomes_project 13 49190370 49190478 + Gm23566 miRNA miRNA MGP_AJ_T0037842.1 MGP_AJ_G0020807.1 mouse_genomes_project 13 94499778 94522399 - MGP_AJ_P0037842 Hmgcr protein_coding protein_coding MGP_AJ_T0037843.1 MGP_AJ_G0020807.1 mouse_genomes_project 13 94501081 94518137 - MGP_AJ_P0037843 Hmgcr protein_coding nonsense_mediated_decay MGP_AJ_T0037844.1 MGP_AJ_G0020807.1 mouse_genomes_project 13 94501248 94503592 - MGP_AJ_P0037844 Hmgcr protein_coding protein_coding MGP_AJ_T0037845.1 MGP_AJ_G0020807.1 mouse_genomes_project 13 94502154 94518084 - MGP_AJ_P0037845 Hmgcr protein_coding protein_coding MGP_AJ_T0037846.1 MGP_AJ_G0020807.1 mouse_genomes_project 13 94502921 94507456 - MGP_AJ_P0037846 Hmgcr protein_coding protein_coding MGP_AJ_T0037847.1 MGP_AJ_G0020807.1 mouse_genomes_project 13 94510263 94522338 - Hmgcr protein_coding retained_intron MGP_AJ_T0037848.1 MGP_AJ_G0020807.1 mouse_genomes_project 13 94511529 94522286 - MGP_AJ_P0037848 Hmgcr protein_coding protein_coding MGP_AJ_T0037849.1 MGP_AJ_G0020807.1 mouse_genomes_project 13 94517079 94517961 - Hmgcr protein_coding retained_intron MGP_AJ_T0037850.1 MGP_AJ_G0020807.1 mouse_genomes_project 13 94517489 94521022 - MGP_AJ_P0037850 Hmgcr protein_coding protein_coding MGP_AJ_T0037851.1 MGP_AJ_G0020807.1 mouse_genomes_project 13 94517494 94521931 - MGP_AJ_P0037851 Hmgcr protein_coding protein_coding MGP_AJ_T0037852.1 MGP_AJ_G0020807.1 mouse_genomes_project 13 94517692 94522311 - Hmgcr protein_coding retained_intron MGP_AJ_T0036279.1 MGP_AJ_G0020204.1 mouse_genomes_project 13 11527738 11535695 + MGP_AJ_P0036279 AW209491 protein_coding protein_coding MGP_AJ_T0036280.1 MGP_AJ_G0020204.1 mouse_genomes_project 13 11527751 11535695 + MGP_AJ_P0036280 AW209491 protein_coding protein_coding MGP_AJ_T0006539.1 MGP_AJ_G0005420.1 mouse_genomes_project 13 27757823 27767005 + 4930519D14Rik lincRNA lincRNA MGP_AJ_T0036368.1 MGP_AJ_G0020244.1 mouse_genomes_project 13 18555286 18560949 + MGP_AJ_P0036368 protein_coding protein_coding MGP_AJ_T0036369.1 MGP_AJ_G0020244.1 mouse_genomes_project 13 18559790 18560970 + MGP_AJ_P0036369 protein_coding protein_coding MGP_AJ_T0036407.1 MGP_AJ_G0020270.1 mouse_genomes_project 13 19090145 19091042 - MGP_AJ_P0036407 Vmn1r191 protein_coding protein_coding MGP_AJ_T0011356.1 MGP_AJ_G0009478.1 mouse_genomes_project 13 54176350 54176477 + Gm27301 misc_RNA misc_RNA MGP_AJ_T0036906.1 MGP_AJ_G0020492.1 mouse_genomes_project 13 46796274 46819375 + MGP_AJ_P0036906 Aspn protein_coding protein_coding MGP_AJ_T0036907.1 MGP_AJ_G0020492.1 mouse_genomes_project 13 46796274 46819375 + MGP_AJ_P0036907 Aspn protein_coding protein_coding MGP_AJ_T0011354.1 MGP_AJ_G0009476.1 mouse_genomes_project 13 51856455 51856716 - Gm22668 misc_RNA misc_RNA MGP_AJ_T0012947.1 MGP_AJ_G0011042.1 mouse_genomes_project 13 74607574 74607994 - processed_pseudogene processed_pseudogene MGP_AJ_T0006644.1 MGP_AJ_G0005493.1 mouse_genomes_project 13 109320509 109327527 - Gm6270 lincRNA lincRNA MGP_AJ_T0011353.1 MGP_AJ_G0009475.1 mouse_genomes_project 13 48427395 48427521 + Gm22199 misc_RNA misc_RNA MGP_AJ_T0101723.1 MGP_AJ_G0039663.1 mouse_genomes_project 13 101125392 101129667 - transcribed_processed_pseudogene processed_transcript MGP_AJ_T0011362.1 MGP_AJ_G0009484.1 mouse_genomes_project 13 106449587 106449843 - Gm27572 misc_RNA misc_RNA MGP_AJ_T0006578.1 MGP_AJ_G0005449.1 mouse_genomes_project 13 49402259 49405629 + Gm26651 lincRNA lincRNA MGP_AJ_T0036335.1 MGP_AJ_G0020228.1 mouse_genomes_project 13 18198185 18199240 + MGP_AJ_P0036335 Olfr1367 protein_coding protein_coding MGP_AJ_T0099453.1 MGP_AJ_G0037419.1 mouse_genomes_project 13 32832046 32832188 + Gm22126 snRNA snRNA MGP_AJ_T0037487.1 MGP_AJ_G0020696.1 mouse_genomes_project 13 70444715 70450097 + MGP_AJ_P0037487 Irx2 protein_coding protein_coding MGP_AJ_T0037488.1 MGP_AJ_G0020696.1 mouse_genomes_project 13 70444866 70446624 + Irx2 protein_coding processed_transcript MGP_AJ_T0037489.1 MGP_AJ_G0020696.1 mouse_genomes_project 13 70445723 70446779 + MGP_AJ_P0037489 Irx2 protein_coding protein_coding MGP_AJ_T0037490.1 MGP_AJ_G0020696.1 mouse_genomes_project 13 70447983 70449512 + Irx2 protein_coding retained_intron MGP_AJ_T0037491.1 MGP_AJ_G0020696.1 mouse_genomes_project 13 70448495 70449669 + MGP_AJ_P0037491 Irx2 protein_coding protein_coding MGP_AJ_T0037955.1 MGP_AJ_G0020844.1 mouse_genomes_project 13 98680730 98689597 - MGP_AJ_P0037955 Mrps36 protein_coding protein_coding MGP_AJ_T0037956.1 MGP_AJ_G0020844.1 mouse_genomes_project 13 98680852 98689595 - MGP_AJ_P0037956 Mrps36 protein_coding protein_coding MGP_AJ_T0037957.1 MGP_AJ_G0020844.1 mouse_genomes_project 13 98680904 98689069 - Mrps36 protein_coding processed_transcript MGP_AJ_T0037958.1 MGP_AJ_G0020844.1 mouse_genomes_project 13 98680927 98689526 - Mrps36 protein_coding processed_transcript MGP_AJ_T0037959.1 MGP_AJ_G0020844.1 mouse_genomes_project 13 98680955 98689052 - Mrps36 protein_coding processed_transcript MGP_AJ_T0037960.1 MGP_AJ_G0020844.1 mouse_genomes_project 13 98688356 98689051 - Mrps36 protein_coding processed_transcript MGP_AJ_T0036244.1 MGP_AJ_G0020192.1 mouse_genomes_project 13 10321972 10392506 + MGP_AJ_P0036244 Nid1 protein_coding protein_coding MGP_AJ_T0102281.1 MGP_AJ_G0040023.1 mouse_genomes_project 13 18934120 18934636 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0011359.1 MGP_AJ_G0009481.1 mouse_genomes_project 13 96945367 96945620 - Gm24733 misc_RNA misc_RNA MGP_AJ_T0006599.1 MGP_AJ_G0005461.1 mouse_genomes_project 13 65255561 65263015 + 9430065F17Rik lincRNA lincRNA MGP_AJ_T0006600.1 MGP_AJ_G0005461.1 mouse_genomes_project 13 65255590 65265119 + 9430065F17Rik lincRNA lincRNA MGP_AJ_T0036228.1 MGP_AJ_G0020185.1 mouse_genomes_project 13 8854115 8926722 - MGP_AJ_P0036228 Actn2 protein_coding protein_coding MGP_AJ_T0036229.1 MGP_AJ_G0020185.1 mouse_genomes_project 13 8854124 8926686 - MGP_AJ_P0036229 Actn2 protein_coding protein_coding MGP_AJ_T0036230.1 MGP_AJ_G0020185.1 mouse_genomes_project 13 8892532 8926694 - MGP_AJ_P0036230 Actn2 protein_coding protein_coding MGP_AJ_T0036146.1 MGP_AJ_G0020169.1 mouse_genomes_project 13 3005248 3007712 + MGP_AJ_P0036146 Gm28465 protein_coding protein_coding MGP_AJ_T0003446.1 MGP_AJ_G0003157.1 mouse_genomes_project 13 38969682 38970695 + 1700061E18Rik antisense antisense MGP_AJ_T0000889.1 MGP_AJ_G0000823.1 mouse_genomes_project 13 88052732 88053275 + TEC TEC MGP_AJ_T0038037.1 MGP_AJ_G0020864.1 mouse_genomes_project 13 103036031 103076566 + MGP_AJ_P0038037 4933425L06Rik protein_coding protein_coding MGP_AJ_T0006610.1 MGP_AJ_G0005470.1 mouse_genomes_project 13 78858294 79018186 + 9330111N05Rik lincRNA lincRNA MGP_AJ_T0006611.1 MGP_AJ_G0005470.1 mouse_genomes_project 13 78859480 78975696 + 9330111N05Rik lincRNA lincRNA MGP_AJ_T0006612.1 MGP_AJ_G0005470.1 mouse_genomes_project 13 78876326 79020626 + 9330111N05Rik lincRNA lincRNA MGP_AJ_T0011361.1 MGP_AJ_G0009483.1 mouse_genomes_project 13 101381071 101381352 - Gm24441 misc_RNA misc_RNA MGP_AJ_T0003491.1 MGP_AJ_G0003182.1 mouse_genomes_project 13 91448200 91451953 + Gm15622 antisense antisense MGP_AJ_T0037506.1 MGP_AJ_G0020704.1 mouse_genomes_project 13 71447411 71471070 + MGP_AJ_P0037506 Tert protein_coding protein_coding MGP_AJ_T0009938.1 MGP_AJ_G0008060.1 mouse_genomes_project 13 52962416 52962484 - Mir6945 miRNA miRNA MGP_AJ_T0037150.1 MGP_AJ_G0020557.1 mouse_genomes_project 13 52994079 53025883 - MGP_AJ_P0037150 Fam193b protein_coding protein_coding MGP_AJ_T0037534.1 MGP_AJ_G0020716.1 mouse_genomes_project 13 71996610 72037201 - MGP_AJ_P0037534 Exoc3 protein_coding protein_coding MGP_AJ_T0011355.1 MGP_AJ_G0009477.1 mouse_genomes_project 13 54172648 54172897 + Gm27698 misc_RNA misc_RNA MGP_AJ_T0006541.1 MGP_AJ_G0005422.1 mouse_genomes_project 13 28432468 28532564 + Gm11376 lincRNA lincRNA MGP_AJ_T0036191.1 MGP_AJ_G0020178.1 mouse_genomes_project 13 5592102 5616299 - MGP_AJ_P0036191 Gtpbp4 protein_coding protein_coding MGP_AJ_T0036445.1 MGP_AJ_G0020302.1 mouse_genomes_project 13 20583273 20584333 + MGP_AJ_P0036445 Hist1h3f protein_coding protein_coding MGP_AJ_T0038157.1 MGP_AJ_G0020901.1 mouse_genomes_project 13 111290429 111371746 + MGP_AJ_P0038157 BC067074 protein_coding protein_coding MGP_AJ_T0038158.1 MGP_AJ_G0020901.1 mouse_genomes_project 13 111344514 111372744 + MGP_AJ_P0038158 BC067074 protein_coding protein_coding MGP_AJ_T0038159.1 MGP_AJ_G0020901.1 mouse_genomes_project 13 111353663 111381520 + MGP_AJ_P0038159 BC067074 protein_coding protein_coding MGP_AJ_T0037180.1 MGP_AJ_G0020570.1 mouse_genomes_project 13 53757896 53765803 - MGP_AJ_P0037180 Cxcl14 protein_coding protein_coding MGP_AJ_T0038156.1 MGP_AJ_G0020900.1 mouse_genomes_project 13 111208080 111216674 + MGP_AJ_P0038156 Esm1 protein_coding protein_coding MGP_AJ_T0037390.1 MGP_AJ_G0020645.1 mouse_genomes_project 13 64559588 64564364 - MGP_AJ_P0037390 Uqcrb protein_coding protein_coding MGP_AJ_T0037391.1 MGP_AJ_G0020645.1 mouse_genomes_project 13 64560021 64561755 - Uqcrb protein_coding processed_transcript MGP_AJ_T0036618.1 MGP_AJ_G0020383.1 mouse_genomes_project 13 30006259 30016147 - MGP_AJ_P0036618 Serpinb1a protein_coding protein_coding MGP_AJ_T0036619.1 MGP_AJ_G0020383.1 mouse_genomes_project 13 30006260 30016147 - MGP_AJ_P0036619 Serpinb1a protein_coding protein_coding MGP_AJ_T0009928.1 MGP_AJ_G0008050.1 mouse_genomes_project 13 38025514 38025586 + Mir5124a miRNA miRNA MGP_AJ_T0037511.1 MGP_AJ_G0020706.1 mouse_genomes_project 13 71502359 71523383 - MGP_AJ_P0037511 Slc6a19 protein_coding protein_coding MGP_AJ_T0037512.1 MGP_AJ_G0020706.1 mouse_genomes_project 13 71502361 71523298 - Slc6a19 protein_coding retained_intron MGP_AJ_T0037513.1 MGP_AJ_G0020706.1 mouse_genomes_project 13 71502361 71515269 - Slc6a19 protein_coding processed_transcript MGP_AJ_T0037514.1 MGP_AJ_G0020706.1 mouse_genomes_project 13 71511701 71527468 - Slc6a19 protein_coding processed_transcript MGP_AJ_T0037515.1 MGP_AJ_G0020706.1 mouse_genomes_project 13 71512184 71515012 - Slc6a19 protein_coding processed_transcript MGP_AJ_T0037516.1 MGP_AJ_G0020706.1 mouse_genomes_project 13 71512352 71523284 - MGP_AJ_P0037516 Slc6a19 protein_coding nonsense_mediated_decay MGP_AJ_T0037517.1 MGP_AJ_G0020706.1 mouse_genomes_project 13 71512390 71514869 - Slc6a19 protein_coding processed_transcript MGP_AJ_T0099471.1 MGP_AJ_G0037437.1 mouse_genomes_project 13 93946041 93946141 - Gm23955 snRNA snRNA MGP_AJ_T0037162.1 MGP_AJ_G0020562.1 mouse_genomes_project 13 53156684 53166776 + MGP_AJ_P0037162 B230219D22Rik protein_coding protein_coding MGP_AJ_T0098914.1 MGP_AJ_G0036894.1 mouse_genomes_project 13 40171251 40178324 + Gm15809 sense_intronic sense_intronic MGP_AJ_T0099459.1 MGP_AJ_G0037425.1 mouse_genomes_project 13 42198272 42198376 - Gm23104 snRNA snRNA MGP_AJ_T0036829.1 MGP_AJ_G0020467.1 mouse_genomes_project 13 43702942 43850608 + MGP_AJ_P0036829 Cap2 protein_coding protein_coding MGP_AJ_T0036830.1 MGP_AJ_G0020467.1 mouse_genomes_project 13 43840300 43846823 + Cap2 protein_coding processed_transcript MGP_AJ_T0102289.1 MGP_AJ_G0040031.1 mouse_genomes_project 13 19409513 19411829 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0006567.1 MGP_AJ_G0005441.1 mouse_genomes_project 13 41572612 41627658 - Gm27007 lincRNA lincRNA MGP_AJ_T0036982.1 MGP_AJ_G0020513.1 mouse_genomes_project 13 50394273 50408104 - MGP_AJ_P0036982 Nfil3 protein_coding protein_coding MGP_AJ_T0017343.1 MGP_AJ_G0015222.1 mouse_genomes_project 13 18901010 18905980 + Gm11292 processed_transcript processed_transcript MGP_AJ_T0012918.1 MGP_AJ_G0011013.1 mouse_genomes_project 13 27875015 27875275 + processed_pseudogene processed_pseudogene MGP_AJ_T0098916.1 MGP_AJ_G0036896.1 mouse_genomes_project 13 89213799 89214252 - Gm29540 sense_intronic sense_intronic MGP_AJ_T0038139.1 MGP_AJ_G0020890.1 mouse_genomes_project 13 110776808 110845681 + MGP_AJ_P0038139 Plpp1 protein_coding protein_coding MGP_AJ_T0038140.1 MGP_AJ_G0020890.1 mouse_genomes_project 13 110776837 110845435 + MGP_AJ_P0038140 Plpp1 protein_coding protein_coding MGP_AJ_T0038036.1 MGP_AJ_G0020863.1 mouse_genomes_project 13 102903570 103011955 - MGP_AJ_P0038036 Rgs7bp protein_coding protein_coding MGP_AJ_T0036405.1 MGP_AJ_G0020268.1 mouse_genomes_project 13 18919973 18920436 + MGP_AJ_P0036405 Hist1h2bj protein_coding protein_coding MGP_AJ_T0009949.1 MGP_AJ_G0008071.1 mouse_genomes_project 13 67165380 67165500 - Gm44375 miRNA miRNA MGP_AJ_T0100711.1 MGP_AJ_G0038677.1 mouse_genomes_project 13 5571323 5571456 - Gm23923 snoRNA snoRNA MGP_AJ_T0037519.1 MGP_AJ_G0020708.1 mouse_genomes_project 13 71643230 71672339 - MGP_AJ_P0037519 Nkd2 protein_coding protein_coding MGP_AJ_T0037520.1 MGP_AJ_G0020708.1 mouse_genomes_project 13 71644390 71672320 - MGP_AJ_P0037520 Nkd2 protein_coding protein_coding MGP_AJ_T0037521.1 MGP_AJ_G0020708.1 mouse_genomes_project 13 71648233 71672320 - Nkd2 protein_coding retained_intron MGP_AJ_T0036997.1 MGP_AJ_G0020523.1 mouse_genomes_project 13 51930788 51976543 + MGP_AJ_P0036997 Simc1 protein_coding protein_coding MGP_AJ_T0036998.1 MGP_AJ_G0020523.1 mouse_genomes_project 13 51930788 51976543 + MGP_AJ_P0036998 Simc1 protein_coding protein_coding MGP_AJ_T0036999.1 MGP_AJ_G0020523.1 mouse_genomes_project 13 51930813 51966962 + MGP_AJ_P0036999 Simc1 protein_coding protein_coding MGP_AJ_T0037000.1 MGP_AJ_G0020523.1 mouse_genomes_project 13 51930818 51966961 + MGP_AJ_P0037000 Simc1 protein_coding nonsense_mediated_decay MGP_AJ_T0037001.1 MGP_AJ_G0020523.1 mouse_genomes_project 13 51939155 51951260 + Simc1 protein_coding processed_transcript MGP_AJ_T0037002.1 MGP_AJ_G0020523.1 mouse_genomes_project 13 51955937 51967078 + Simc1 protein_coding retained_intron MGP_AJ_T0037003.1 MGP_AJ_G0020523.1 mouse_genomes_project 13 51972138 51976039 + Simc1 protein_coding retained_intron MGP_AJ_T0102325.1 MGP_AJ_G0040067.1 mouse_genomes_project 13 30959332 30961879 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0038018.1 MGP_AJ_G0020856.1 mouse_genomes_project 13 102133950 102158162 + MGP_AJ_P0038018 Trim23 protein_coding protein_coding MGP_AJ_T0038019.1 MGP_AJ_G0020856.1 mouse_genomes_project 13 102133992 102158517 + MGP_AJ_P0038019 Trim23 protein_coding protein_coding MGP_AJ_T0038020.1 MGP_AJ_G0020856.1 mouse_genomes_project 13 102134014 102144885 + MGP_AJ_P0038020 Trim23 protein_coding nonsense_mediated_decay MGP_AJ_T0038021.1 MGP_AJ_G0020856.1 mouse_genomes_project 13 102134251 102157194 + MGP_AJ_P0038021 Trim23 protein_coding protein_coding MGP_AJ_T0000888.1 MGP_AJ_G0000822.1 mouse_genomes_project 13 87972096 87972913 + TEC TEC MGP_AJ_T0012904.1 MGP_AJ_G0010999.1 mouse_genomes_project 13 22542667 22543375 + processed_pseudogene processed_pseudogene MGP_AJ_T0003508.1 MGP_AJ_G0003193.1 mouse_genomes_project 13 115740573 115753999 - 4933413L06Rik antisense antisense MGP_AJ_T0003509.1 MGP_AJ_G0003193.1 mouse_genomes_project 13 115740828 115753975 - 4933413L06Rik antisense antisense MGP_AJ_T0037527.1 MGP_AJ_G0020713.1 mouse_genomes_project 13 71835310 71857254 + Tppp protein_coding processed_transcript MGP_AJ_T0037528.1 MGP_AJ_G0020713.1 mouse_genomes_project 13 71835322 71861636 + MGP_AJ_P0037528 Tppp protein_coding protein_coding MGP_AJ_T0037529.1 MGP_AJ_G0020713.1 mouse_genomes_project 13 71835336 71847349 + Tppp protein_coding retained_intron MGP_AJ_T0037530.1 MGP_AJ_G0020713.1 mouse_genomes_project 13 71856632 71859482 + Tppp protein_coding processed_transcript MGP_AJ_T0098579.1 MGP_AJ_G0036563.1 mouse_genomes_project 13 111405251 111405352 + Gm22385 rRNA rRNA MGP_AJ_T0012930.1 MGP_AJ_G0011025.1 mouse_genomes_project 13 51926775 51927160 - processed_pseudogene processed_pseudogene MGP_AJ_T0036963.1 MGP_AJ_G0020510.1 mouse_genomes_project 13 49929083 49955544 - MGP_AJ_P0036963 Diras2 protein_coding protein_coding MGP_AJ_T0003505.1 MGP_AJ_G0003190.1 mouse_genomes_project 13 104720583 104730113 + Gm28989 antisense antisense MGP_AJ_T0037077.1 MGP_AJ_G0020537.1 mouse_genomes_project 13 52434339 52449773 - MGP_AJ_P0037077 protein_coding protein_coding MGP_AJ_T0037078.1 MGP_AJ_G0020537.1 mouse_genomes_project 13 52434342 52449622 - MGP_AJ_P0037078 protein_coding protein_coding MGP_AJ_T0037079.1 MGP_AJ_G0020537.1 mouse_genomes_project 13 52434346 52449684 - MGP_AJ_P0037079 protein_coding nonsense_mediated_decay MGP_AJ_T0037080.1 MGP_AJ_G0020537.1 mouse_genomes_project 13 52434421 52449292 - MGP_AJ_P0037080 protein_coding protein_coding MGP_AJ_T0037081.1 MGP_AJ_G0020537.1 mouse_genomes_project 13 52434422 52449292 - MGP_AJ_P0037081 protein_coding protein_coding MGP_AJ_T0037082.1 MGP_AJ_G0020537.1 mouse_genomes_project 13 52434525 52449639 - MGP_AJ_P0037082 protein_coding unknown_likely_coding MGP_AJ_T0037083.1 MGP_AJ_G0020537.1 mouse_genomes_project 13 52443420 52449685 - MGP_AJ_P0037083 protein_coding protein_coding MGP_AJ_T0037084.1 MGP_AJ_G0020537.1 mouse_genomes_project 13 52443470 52449710 - MGP_AJ_P0037084 protein_coding nonsense_mediated_decay MGP_AJ_T0037085.1 MGP_AJ_G0020537.1 mouse_genomes_project 13 52444158 52449605 - MGP_AJ_P0037085 protein_coding nonsense_mediated_decay MGP_AJ_T0009951.1 MGP_AJ_G0008073.1 mouse_genomes_project 13 74256721 74256797 - Gm24025 miRNA miRNA MGP_AJ_T0006558.1 MGP_AJ_G0005433.1 mouse_genomes_project 13 34612630 34614628 - Gm29459 lincRNA lincRNA MGP_AJ_T0037857.1 MGP_AJ_G0020811.1 mouse_genomes_project 13 94991240 95000500 - MGP_AJ_P0037857 Nsa2 protein_coding protein_coding MGP_AJ_T0036108.1 MGP_AJ_G0020150.1 mouse_genomes_project 13 157392 202202 - MGP_AJ_P0036108 Fam208b protein_coding protein_coding MGP_AJ_T0036188.1 MGP_AJ_G0020176.1 mouse_genomes_project 13 5568323 5576154 + MGP_AJ_P0036188 protein_coding protein_coding MGP_AJ_T0099463.1 MGP_AJ_G0037429.1 mouse_genomes_project 13 58421456 58421555 + Gm24594 snRNA snRNA MGP_AJ_T0036869.1 MGP_AJ_G0020478.1 mouse_genomes_project 13 45756502 45757792 + MGP_AJ_P0036869 A830005F24Rik protein_coding protein_coding MGP_AJ_T0038184.1 MGP_AJ_G0020912.1 mouse_genomes_project 13 114864378 115047250 - MGP_AJ_P0038184 Parp8 protein_coding protein_coding MGP_AJ_T0102308.1 MGP_AJ_G0040050.1 mouse_genomes_project 13 20184904 20185809 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0006556.1 MGP_AJ_G0005432.1 mouse_genomes_project 13 34585141 34587588 - Gm4035 lincRNA lincRNA MGP_AJ_T0006557.1 MGP_AJ_G0005432.1 mouse_genomes_project 13 34585253 34598413 - Gm4035 lincRNA lincRNA MGP_AJ_T0036627.1 MGP_AJ_G0020387.1 mouse_genomes_project 13 30180747 30195215 + MGP_AJ_P0036627 Serpinb9b protein_coding protein_coding MGP_AJ_T0037821.1 MGP_AJ_G0020797.1 mouse_genomes_project 13 93438225 93454844 - MGP_AJ_P0037821 F2r protein_coding protein_coding MGP_AJ_T0038185.1 MGP_AJ_G0020913.1 mouse_genomes_project 13 115231398 115233770 - MGP_AJ_P0038185 Gm17509 protein_coding protein_coding MGP_AJ_T0036546.1 MGP_AJ_G0020346.1 mouse_genomes_project 13 24391925 24398551 + MGP_AJ_P0036546 Prl6a1 protein_coding protein_coding MGP_AJ_T0036547.1 MGP_AJ_G0020346.1 mouse_genomes_project 13 24393244 24398551 + MGP_AJ_P0036547 Prl6a1 protein_coding protein_coding MGP_AJ_T0036536.1 MGP_AJ_G0020338.1 mouse_genomes_project 13 23848816 23850766 - MGP_AJ_P0036536 Hdgfl1 protein_coding protein_coding MGP_AJ_T0009929.1 MGP_AJ_G0008051.1 mouse_genomes_project 13 39794907 39794988 + miRNA miRNA MGP_AJ_T0036890.1 MGP_AJ_G0020485.1 mouse_genomes_project 13 46455582 46468989 - MGP_AJ_P0036890 Card19 protein_coding protein_coding MGP_AJ_T0036677.1 MGP_AJ_G0020406.1 mouse_genomes_project 13 31878861 31891625 + MGP_AJ_P0036677 Fam50b protein_coding protein_coding MGP_AJ_T0037386.1 MGP_AJ_G0020643.1 mouse_genomes_project 13 62910177 62911330 + MGP_AJ_P0037386 Gm10775 protein_coding protein_coding MGP_AJ_T0036149.1 MGP_AJ_G0020171.1 mouse_genomes_project 13 3183017 3192216 - Pfkp protein_coding retained_intron MGP_AJ_T0036150.1 MGP_AJ_G0020171.1 mouse_genomes_project 13 3183017 3250030 - MGP_AJ_P0036150 Pfkp protein_coding protein_coding MGP_AJ_T0036151.1 MGP_AJ_G0020171.1 mouse_genomes_project 13 3184431 3249978 - MGP_AJ_P0036151 Pfkp protein_coding protein_coding MGP_AJ_T0036152.1 MGP_AJ_G0020171.1 mouse_genomes_project 13 3184717 3190345 - MGP_AJ_P0036152 Pfkp protein_coding protein_coding MGP_AJ_T0036153.1 MGP_AJ_G0020171.1 mouse_genomes_project 13 3185722 3201129 - MGP_AJ_P0036153 Pfkp protein_coding nonsense_mediated_decay MGP_AJ_T0036154.1 MGP_AJ_G0020171.1 mouse_genomes_project 13 3185722 3202010 - MGP_AJ_P0036154 Pfkp protein_coding nonsense_mediated_decay MGP_AJ_T0036155.1 MGP_AJ_G0020171.1 mouse_genomes_project 13 3189137 3191875 - Pfkp protein_coding retained_intron MGP_AJ_T0036156.1 MGP_AJ_G0020171.1 mouse_genomes_project 13 3196222 3249978 - Pfkp protein_coding retained_intron MGP_AJ_T0036157.1 MGP_AJ_G0020171.1 mouse_genomes_project 13 3201544 3206061 - Pfkp protein_coding retained_intron MGP_AJ_T0036158.1 MGP_AJ_G0020171.1 mouse_genomes_project 13 3205650 3249978 - Pfkp protein_coding retained_intron MGP_AJ_T0036159.1 MGP_AJ_G0020171.1 mouse_genomes_project 13 3215773 3223306 - Pfkp protein_coding retained_intron MGP_AJ_T0036160.1 MGP_AJ_G0020171.1 mouse_genomes_project 13 3220314 3249978 - Pfkp protein_coding retained_intron MGP_AJ_T0036161.1 MGP_AJ_G0020171.1 mouse_genomes_project 13 3222143 3237900 - MGP_AJ_P0036161 Pfkp protein_coding protein_coding MGP_AJ_T0036628.1 MGP_AJ_G0020388.1 mouse_genomes_project 13 30229554 30240342 + MGP_AJ_P0036628 Serpinb1b protein_coding protein_coding MGP_AJ_T0036427.1 MGP_AJ_G0020290.1 mouse_genomes_project 13 20038777 20039680 + MGP_AJ_P0036427 Vmn1r215 protein_coding protein_coding MGP_AJ_T0036600.1 MGP_AJ_G0020372.1 mouse_genomes_project 13 27958019 28095352 - MGP_AJ_P0036600 Exoc2 protein_coding protein_coding MGP_AJ_T0036601.1 MGP_AJ_G0020372.1 mouse_genomes_project 13 27958019 28119400 - MGP_AJ_P0036601 Exoc2 protein_coding protein_coding MGP_AJ_T0037301.1 MGP_AJ_G0020606.1 mouse_genomes_project 13 58353036 58367379 - MGP_AJ_P0037301 4930486L24Rik protein_coding protein_coding MGP_AJ_T0012876.1 MGP_AJ_G0010971.1 mouse_genomes_project 13 5764011 5764162 - processed_pseudogene processed_pseudogene MGP_AJ_T0036454.1 MGP_AJ_G0020309.1 mouse_genomes_project 13 20745283 20745806 - MGP_AJ_P0036454 Hist1h4c protein_coding protein_coding MGP_AJ_T0100723.1 MGP_AJ_G0038689.1 mouse_genomes_project 13 32429665 32429796 - Gm22674 snoRNA snoRNA MGP_AJ_T0017366.1 MGP_AJ_G0015236.1 mouse_genomes_project 13 109544444 109613649 + Gm15286 processed_transcript processed_transcript MGP_AJ_T0017367.1 MGP_AJ_G0015236.1 mouse_genomes_project 13 109583559 109611654 + Gm15286 processed_transcript processed_transcript MGP_AJ_T0037874.1 MGP_AJ_G0020817.1 mouse_genomes_project 13 96155661 96166424 + MGP_AJ_P0037874 Ankra2 protein_coding protein_coding MGP_AJ_T0037875.1 MGP_AJ_G0020817.1 mouse_genomes_project 13 96155704 96166423 + MGP_AJ_P0037875 Ankra2 protein_coding protein_coding MGP_AJ_T0037876.1 MGP_AJ_G0020817.1 mouse_genomes_project 13 96155707 96166425 + MGP_AJ_P0037876 Ankra2 protein_coding protein_coding MGP_AJ_T0037877.1 MGP_AJ_G0020817.1 mouse_genomes_project 13 96155772 96167257 + MGP_AJ_P0037877 Ankra2 protein_coding protein_coding MGP_AJ_T0037878.1 MGP_AJ_G0020817.1 mouse_genomes_project 13 96160936 96163974 + Ankra2 protein_coding retained_intron MGP_AJ_T0012891.1 MGP_AJ_G0010986.1 mouse_genomes_project 13 19205175 19206255 + processed_pseudogene processed_pseudogene MGP_AJ_T0100710.1 MGP_AJ_G0038676.1 mouse_genomes_project 13 1788779 1788911 - Gm24790 snoRNA snoRNA MGP_AJ_T0000895.1 MGP_AJ_G0000829.1 mouse_genomes_project 13 98826816 98830223 + TEC TEC MGP_AJ_T0017361.1 MGP_AJ_G0015232.1 mouse_genomes_project 13 67386393 67390797 - Gm17108 processed_transcript processed_transcript MGP_AJ_T0036325.1 MGP_AJ_G0020224.1 mouse_genomes_project 13 17983141 17984205 - MGP_AJ_P0036325 Olfr1368 protein_coding protein_coding MGP_AJ_T0036326.1 MGP_AJ_G0020224.1 mouse_genomes_project 13 17983767 17986995 - MGP_AJ_P0036326 Olfr1368 protein_coding protein_coding MGP_AJ_T0102300.1 MGP_AJ_G0040042.1 mouse_genomes_project 13 19922601 19923036 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0017362.1 MGP_AJ_G0015233.1 mouse_genomes_project 13 78779034 78780335 - 1700023H06Rik processed_transcript processed_transcript MGP_AJ_T0002584.1 MGP_AJ_G0002484.1 mouse_genomes_project 13 16077883 16078416 + MGP_AJ_P0002584 Tcrg-V4 TR_V_gene TR_V_gene MGP_AJ_T0037685.1 MGP_AJ_G0020754.1 mouse_genomes_project 13 87459766 87547867 - MGP_AJ_P0037685 Vcan protein_coding protein_coding MGP_AJ_T0037686.1 MGP_AJ_G0020754.1 mouse_genomes_project 13 87460793 87547680 - MGP_AJ_P0037686 Vcan protein_coding protein_coding MGP_AJ_T0037687.1 MGP_AJ_G0020754.1 mouse_genomes_project 13 87461098 87547692 - MGP_AJ_P0037687 Vcan protein_coding protein_coding MGP_AJ_T0037688.1 MGP_AJ_G0020754.1 mouse_genomes_project 13 87461470 87483126 - MGP_AJ_P0037688 Vcan protein_coding protein_coding MGP_AJ_T0037689.1 MGP_AJ_G0020754.1 mouse_genomes_project 13 87461509 87547602 - MGP_AJ_P0037689 Vcan protein_coding protein_coding MGP_AJ_T0037690.1 MGP_AJ_G0020754.1 mouse_genomes_project 13 87462108 87483913 - MGP_AJ_P0037690 Vcan protein_coding protein_coding MGP_AJ_T0037691.1 MGP_AJ_G0020754.1 mouse_genomes_project 13 87515848 87527271 - Vcan protein_coding retained_intron MGP_AJ_T0037692.1 MGP_AJ_G0020754.1 mouse_genomes_project 13 87516391 87547676 - MGP_AJ_P0037692 Vcan protein_coding protein_coding MGP_AJ_T0037693.1 MGP_AJ_G0020754.1 mouse_genomes_project 13 87530732 87545698 - MGP_AJ_P0037693 Vcan protein_coding protein_coding MGP_AJ_T0036372.1 MGP_AJ_G0020247.1 mouse_genomes_project 13 18578814 18579195 + MGP_AJ_P0036372 Hist1h2bm protein_coding protein_coding MGP_AJ_T0038161.1 MGP_AJ_G0020903.1 mouse_genomes_project 13 111663791 111664572 - MGP_AJ_P0038161 Hspb3 protein_coding protein_coding MGP_AJ_T0012880.1 MGP_AJ_G0010975.1 mouse_genomes_project 13 16329680 16330129 + processed_pseudogene processed_pseudogene MGP_AJ_T0036790.1 MGP_AJ_G0020450.1 mouse_genomes_project 13 40327825 40347519 - MGP_AJ_P0036790 Tbc1d7 protein_coding protein_coding MGP_AJ_T0036791.1 MGP_AJ_G0020450.1 mouse_genomes_project 13 40327825 40347519 - MGP_AJ_P0036791 Tbc1d7 protein_coding protein_coding MGP_AJ_T0036379.1 MGP_AJ_G0020254.1 mouse_genomes_project 13 18635287 18636030 - MGP_AJ_P0036379 Hist1h1b protein_coding protein_coding MGP_AJ_T0037582.1 MGP_AJ_G0020736.1 mouse_genomes_project 13 74961156 75059553 - MGP_AJ_P0037582 Slf1 protein_coding protein_coding MGP_AJ_T0037583.1 MGP_AJ_G0020736.1 mouse_genomes_project 13 74962041 74965464 - Slf1 protein_coding retained_intron MGP_AJ_T0037584.1 MGP_AJ_G0020736.1 mouse_genomes_project 13 75022444 75059545 - MGP_AJ_P0037584 Slf1 protein_coding nonsense_mediated_decay MGP_AJ_T0037585.1 MGP_AJ_G0020736.1 mouse_genomes_project 13 75029083 75059545 - MGP_AJ_P0037585 Slf1 protein_coding nonsense_mediated_decay MGP_AJ_T0037586.1 MGP_AJ_G0020736.1 mouse_genomes_project 13 75030041 75056280 - MGP_AJ_P0037586 Slf1 protein_coding protein_coding MGP_AJ_T0037587.1 MGP_AJ_G0020736.1 mouse_genomes_project 13 75030127 75059518 - MGP_AJ_P0037587 Slf1 protein_coding protein_coding MGP_AJ_T0037588.1 MGP_AJ_G0020736.1 mouse_genomes_project 13 75031068 75059540 - Slf1 protein_coding retained_intron MGP_AJ_T0037755.1 MGP_AJ_G0020772.1 mouse_genomes_project 13 90417300 90418902 - MGP_AJ_P0037755 Spz1 protein_coding protein_coding MGP_AJ_T0009953.1 MGP_AJ_G0008075.1 mouse_genomes_project 13 81633383 81633455 + Mir9-2 miRNA miRNA MGP_AJ_T0100753.1 MGP_AJ_G0038719.1 mouse_genomes_project 13 116094987 116095117 + Gm26349 snoRNA snoRNA MGP_AJ_T0036449.1 MGP_AJ_G0020306.1 mouse_genomes_project 13 20631251 20670315 - MGP_AJ_P0036449 protein_coding protein_coding MGP_AJ_T0036450.1 MGP_AJ_G0020306.1 mouse_genomes_project 13 20631252 20670345 - MGP_AJ_P0036450 protein_coding protein_coding MGP_AJ_T0036451.1 MGP_AJ_G0020306.1 mouse_genomes_project 13 20668200 20670299 - protein_coding processed_transcript MGP_AJ_T0036192.1 MGP_AJ_G0020179.1 mouse_genomes_project 13 5717181 5794379 + MGP_AJ_P0036192 Larp4b protein_coding protein_coding MGP_AJ_T0036193.1 MGP_AJ_G0020179.1 mouse_genomes_project 13 5717207 5794571 + MGP_AJ_P0036193 Larp4b protein_coding protein_coding MGP_AJ_T0036194.1 MGP_AJ_G0020179.1 mouse_genomes_project 13 5717212 5747228 + MGP_AJ_P0036194 Larp4b protein_coding protein_coding MGP_AJ_T0036195.1 MGP_AJ_G0020179.1 mouse_genomes_project 13 5717282 5797721 + MGP_AJ_P0036195 Larp4b protein_coding protein_coding MGP_AJ_T0036196.1 MGP_AJ_G0020179.1 mouse_genomes_project 13 5759495 5767046 + Larp4b protein_coding processed_transcript MGP_AJ_T0036197.1 MGP_AJ_G0020179.1 mouse_genomes_project 13 5759715 5760481 + Larp4b protein_coding processed_transcript MGP_AJ_T0036198.1 MGP_AJ_G0020179.1 mouse_genomes_project 13 5791635 5796391 + Larp4b protein_coding retained_intron MGP_AJ_T0037380.1 MGP_AJ_G0020639.1 mouse_genomes_project 13 62704570 62755083 - MGP_AJ_P0037380 Mfsd14b protein_coding protein_coding MGP_AJ_T0037381.1 MGP_AJ_G0020639.1 mouse_genomes_project 13 62704961 62755090 - MGP_AJ_P0037381 Mfsd14b protein_coding protein_coding MGP_AJ_T0037382.1 MGP_AJ_G0020639.1 mouse_genomes_project 13 62706488 62709713 - Mfsd14b protein_coding retained_intron MGP_AJ_T0036732.1 MGP_AJ_G0020427.1 mouse_genomes_project 13 35675459 35703568 - MGP_AJ_P0036732 Txndc5 protein_coding protein_coding MGP_AJ_T0036733.1 MGP_AJ_G0020427.1 mouse_genomes_project 13 35675541 35703074 - MGP_AJ_P0036733 Txndc5 protein_coding protein_coding MGP_AJ_T0036734.1 MGP_AJ_G0020427.1 mouse_genomes_project 13 35675545 35681213 - Txndc5 protein_coding retained_intron MGP_AJ_T0009964.1 MGP_AJ_G0008086.1 mouse_genomes_project 13 111016624 111016733 + Mir449c miRNA miRNA MGP_AJ_T0037830.1 MGP_AJ_G0020803.1 mouse_genomes_project 13 94258821 94279314 - Ankdd1b protein_coding processed_transcript MGP_AJ_T0037831.1 MGP_AJ_G0020803.1 mouse_genomes_project 13 94259133 94315880 - MGP_AJ_P0037831 Ankdd1b protein_coding protein_coding MGP_AJ_T0037832.1 MGP_AJ_G0020803.1 mouse_genomes_project 13 94259444 94278675 - Ankdd1b protein_coding retained_intron MGP_AJ_T0037833.1 MGP_AJ_G0020803.1 mouse_genomes_project 13 94259781 94278641 - MGP_AJ_P0037833 Ankdd1b protein_coding protein_coding MGP_AJ_T0037834.1 MGP_AJ_G0020803.1 mouse_genomes_project 13 94278632 94289130 - Ankdd1b protein_coding retained_intron MGP_AJ_T0037835.1 MGP_AJ_G0020803.1 mouse_genomes_project 13 94287452 94315918 - MGP_AJ_P0037835 Ankdd1b protein_coding protein_coding MGP_AJ_T0102312.1 MGP_AJ_G0040054.1 mouse_genomes_project 13 20777160 20778716 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0006620.1 MGP_AJ_G0005474.1 mouse_genomes_project 13 81783899 81825486 + 2810049E08Rik lincRNA lincRNA MGP_AJ_T0037440.1 MGP_AJ_G0020671.1 mouse_genomes_project 13 65240825 65255466 - MGP_AJ_P0037440 Zfp748 protein_coding protein_coding MGP_AJ_T0037441.1 MGP_AJ_G0020671.1 mouse_genomes_project 13 65247152 65255466 - MGP_AJ_P0037441 Zfp748 protein_coding protein_coding MGP_AJ_T0037046.1 MGP_AJ_G0020531.1 mouse_genomes_project 13 52127380 52162754 + MGP_AJ_P0037046 Cdhr2 protein_coding protein_coding MGP_AJ_T0037047.1 MGP_AJ_G0020531.1 mouse_genomes_project 13 52139043 52162750 + MGP_AJ_P0037047 Cdhr2 protein_coding unknown_likely_coding MGP_AJ_T0036414.1 MGP_AJ_G0020277.1 mouse_genomes_project 13 19305102 19306206 + MGP_AJ_P0036414 Vmn1r199 protein_coding protein_coding MGP_AJ_T0036388.1 MGP_AJ_G0020260.1 mouse_genomes_project 13 18696449 18696851 - MGP_AJ_P0036388 Hist1h4m protein_coding protein_coding MGP_AJ_T0037429.1 MGP_AJ_G0020666.1 mouse_genomes_project 13 65115330 65145440 - MGP_AJ_P0037429 protein_coding protein_coding MGP_AJ_T0037324.1 MGP_AJ_G0020623.1 mouse_genomes_project 13 60962967 61092039 - MGP_AJ_P0037324 Fancc protein_coding protein_coding MGP_AJ_T0037325.1 MGP_AJ_G0020623.1 mouse_genomes_project 13 60969785 61092018 - MGP_AJ_P0037325 Fancc protein_coding protein_coding MGP_AJ_T0037326.1 MGP_AJ_G0020623.1 mouse_genomes_project 13 60970000 60975663 - Fancc protein_coding processed_transcript MGP_AJ_T0037327.1 MGP_AJ_G0020623.1 mouse_genomes_project 13 60970001 61092019 - MGP_AJ_P0037327 Fancc protein_coding protein_coding MGP_AJ_T0037328.1 MGP_AJ_G0020623.1 mouse_genomes_project 13 60970381 61091988 - MGP_AJ_P0037328 Fancc protein_coding protein_coding MGP_AJ_T0037329.1 MGP_AJ_G0020623.1 mouse_genomes_project 13 60970742 60983285 - Fancc protein_coding processed_transcript MGP_AJ_T0037330.1 MGP_AJ_G0020623.1 mouse_genomes_project 13 60974767 61092016 - Fancc protein_coding retained_intron MGP_AJ_T0037331.1 MGP_AJ_G0020623.1 mouse_genomes_project 13 60979565 60990129 - Fancc protein_coding processed_transcript MGP_AJ_T0037332.1 MGP_AJ_G0020623.1 mouse_genomes_project 13 60988803 61010823 - Fancc protein_coding processed_transcript MGP_AJ_T0037333.1 MGP_AJ_G0020623.1 mouse_genomes_project 13 60988803 61092039 - Fancc protein_coding retained_intron MGP_AJ_T0037334.1 MGP_AJ_G0020623.1 mouse_genomes_project 13 60998835 61058835 - MGP_AJ_P0037334 Fancc protein_coding protein_coding MGP_AJ_T0037335.1 MGP_AJ_G0020623.1 mouse_genomes_project 13 61006020 61091551 - MGP_AJ_P0037335 Fancc protein_coding protein_coding MGP_AJ_T0037336.1 MGP_AJ_G0020623.1 mouse_genomes_project 13 61006071 61066895 - MGP_AJ_P0037336 Fancc protein_coding protein_coding MGP_AJ_T0037337.1 MGP_AJ_G0020623.1 mouse_genomes_project 13 61006080 61058962 - Fancc protein_coding retained_intron MGP_AJ_T0037338.1 MGP_AJ_G0020623.1 mouse_genomes_project 13 61006110 61155707 - MGP_AJ_P0037338 Fancc protein_coding protein_coding MGP_AJ_T0037339.1 MGP_AJ_G0020623.1 mouse_genomes_project 13 61063610 61091977 - MGP_AJ_P0037339 Fancc protein_coding protein_coding MGP_AJ_T0037340.1 MGP_AJ_G0020623.1 mouse_genomes_project 13 61063667 61070450 - MGP_AJ_P0037340 Fancc protein_coding protein_coding MGP_AJ_T0036552.1 MGP_AJ_G0020349.1 mouse_genomes_project 13 24497785 24503757 - MGP_AJ_P0036552 Prl8a6 protein_coding protein_coding MGP_AJ_T0036553.1 MGP_AJ_G0020349.1 mouse_genomes_project 13 24497785 24503717 - MGP_AJ_P0036553 Prl8a6 protein_coding protein_coding MGP_AJ_T0036554.1 MGP_AJ_G0020349.1 mouse_genomes_project 13 24497972 24503666 - MGP_AJ_P0036554 Prl8a6 protein_coding protein_coding MGP_AJ_T0037480.1 MGP_AJ_G0020692.1 mouse_genomes_project 13 68385885 68437427 - MGP_AJ_P0037480 Ice1 protein_coding protein_coding MGP_AJ_T0009913.1 MGP_AJ_G0008035.1 mouse_genomes_project 13 5532130 5532233 - Gm22750 miRNA miRNA MGP_AJ_T0036539.1 MGP_AJ_G0020341.1 mouse_genomes_project 13 24186517 24190703 + MGP_AJ_P0036539 protein_coding protein_coding MGP_AJ_T0036358.1 MGP_AJ_G0020237.1 mouse_genomes_project 13 18405613 18406667 - MGP_AJ_P0036358 protein_coding protein_coding MGP_AJ_T0036360.1 MGP_AJ_G0020237.1 mouse_genomes_project 13 18405877 18411418 - MGP_AJ_P0036360 protein_coding protein_coding MGP_AJ_T0099469.1 MGP_AJ_G0037435.1 mouse_genomes_project 13 91784513 91784613 + Gm24737 snRNA snRNA MGP_AJ_T0038062.1 MGP_AJ_G0020873.1 mouse_genomes_project 13 106106392 106146099 + MGP_AJ_P0038062 Ercc8 protein_coding nonsense_mediated_decay MGP_AJ_T0038063.1 MGP_AJ_G0020873.1 mouse_genomes_project 13 106106399 106111341 + Ercc8 protein_coding retained_intron MGP_AJ_T0038064.1 MGP_AJ_G0020873.1 mouse_genomes_project 13 106106399 106122309 + MGP_AJ_P0038064 Ercc8 protein_coding protein_coding MGP_AJ_T0038065.1 MGP_AJ_G0020873.1 mouse_genomes_project 13 106106399 106126554 + MGP_AJ_P0038065 Ercc8 protein_coding nonsense_mediated_decay MGP_AJ_T0038066.1 MGP_AJ_G0020873.1 mouse_genomes_project 13 106106399 106145716 + MGP_AJ_P0038066 Ercc8 protein_coding protein_coding MGP_AJ_T0038067.1 MGP_AJ_G0020873.1 mouse_genomes_project 13 106106415 106145716 + MGP_AJ_P0038067 Ercc8 protein_coding nonsense_mediated_decay MGP_AJ_T0038068.1 MGP_AJ_G0020873.1 mouse_genomes_project 13 106106432 106145708 + MGP_AJ_P0038068 Ercc8 protein_coding nonsense_mediated_decay MGP_AJ_T0038069.1 MGP_AJ_G0020873.1 mouse_genomes_project 13 106106436 106120818 + MGP_AJ_P0038069 Ercc8 protein_coding nonsense_mediated_decay MGP_AJ_T0038070.1 MGP_AJ_G0020873.1 mouse_genomes_project 13 106106464 106133211 + MGP_AJ_P0038070 Ercc8 protein_coding nonsense_mediated_decay MGP_AJ_T0038071.1 MGP_AJ_G0020873.1 mouse_genomes_project 13 106106465 106127970 + MGP_AJ_P0038071 Ercc8 protein_coding nonsense_mediated_decay MGP_AJ_T0011349.1 MGP_AJ_G0009471.1 mouse_genomes_project 13 31437371 31437659 - Gm24530 misc_RNA misc_RNA MGP_AJ_T0100745.1 MGP_AJ_G0038711.1 mouse_genomes_project 13 83919101 83919161 - Gm22574 snoRNA snoRNA MGP_AJ_T0017369.1 MGP_AJ_G0015238.1 mouse_genomes_project 13 117533537 117536495 - Gm9752 processed_transcript processed_transcript MGP_AJ_T0100716.1 MGP_AJ_G0038682.1 mouse_genomes_project 13 9179130 9179318 + Gm25804 snoRNA snoRNA MGP_AJ_T0038080.1 MGP_AJ_G0020876.1 mouse_genomes_project 13 106401790 106797917 + Pde4d protein_coding processed_transcript MGP_AJ_T0038081.1 MGP_AJ_G0020876.1 mouse_genomes_project 13 106401851 106796932 + Pde4d protein_coding processed_transcript MGP_AJ_T0038082.1 MGP_AJ_G0020876.1 mouse_genomes_project 13 106584801 107896727 + MGP_AJ_P0038082 Pde4d protein_coding protein_coding MGP_AJ_T0038083.1 MGP_AJ_G0020876.1 mouse_genomes_project 13 106796954 107896597 + MGP_AJ_P0038083 Pde4d protein_coding protein_coding MGP_AJ_T0038084.1 MGP_AJ_G0020876.1 mouse_genomes_project 13 107055332 107270599 + Pde4d protein_coding processed_transcript MGP_AJ_T0038085.1 MGP_AJ_G0020876.1 mouse_genomes_project 13 107055460 107707417 + Pde4d protein_coding retained_intron MGP_AJ_T0038086.1 MGP_AJ_G0020876.1 mouse_genomes_project 13 107055742 107896640 + MGP_AJ_P0038086 Pde4d protein_coding protein_coding MGP_AJ_T0038087.1 MGP_AJ_G0020876.1 mouse_genomes_project 13 107195665 107896617 + MGP_AJ_P0038087 Pde4d protein_coding protein_coding MGP_AJ_T0038088.1 MGP_AJ_G0020876.1 mouse_genomes_project 13 107373647 107896617 + MGP_AJ_P0038088 Pde4d protein_coding protein_coding MGP_AJ_T0038089.1 MGP_AJ_G0020876.1 mouse_genomes_project 13 107515172 107896597 + MGP_AJ_P0038089 Pde4d protein_coding protein_coding MGP_AJ_T0038090.1 MGP_AJ_G0020876.1 mouse_genomes_project 13 107567944 107896617 + MGP_AJ_P0038090 Pde4d protein_coding protein_coding MGP_AJ_T0038091.1 MGP_AJ_G0020876.1 mouse_genomes_project 13 107620372 107896727 + MGP_AJ_P0038091 Pde4d protein_coding protein_coding MGP_AJ_T0038092.1 MGP_AJ_G0020876.1 mouse_genomes_project 13 107620392 107707414 + Pde4d protein_coding retained_intron MGP_AJ_T0038093.1 MGP_AJ_G0020876.1 mouse_genomes_project 13 107693657 107698049 + Pde4d protein_coding processed_transcript MGP_AJ_T0038094.1 MGP_AJ_G0020876.1 mouse_genomes_project 13 107847741 107896640 + MGP_AJ_P0038094 Pde4d protein_coding nonsense_mediated_decay MGP_AJ_T0038095.1 MGP_AJ_G0020876.1 mouse_genomes_project 13 107847745 107898773 + MGP_AJ_P0038095 Pde4d protein_coding protein_coding MGP_AJ_T0038096.1 MGP_AJ_G0020876.1 mouse_genomes_project 13 107867564 107882813 + Pde4d protein_coding retained_intron MGP_AJ_T0038097.1 MGP_AJ_G0020876.1 mouse_genomes_project 13 107869716 107896597 + MGP_AJ_P0038097 Pde4d protein_coding protein_coding MGP_AJ_T0038098.1 MGP_AJ_G0020876.1 mouse_genomes_project 13 107871497 107896617 + MGP_AJ_P0038098 Pde4d protein_coding protein_coding MGP_AJ_T0038099.1 MGP_AJ_G0020876.1 mouse_genomes_project 13 107879830 107893601 + MGP_AJ_P0038099 Pde4d protein_coding protein_coding MGP_AJ_T0000893.1 MGP_AJ_G0000827.1 mouse_genomes_project 13 96405069 96405644 - TEC TEC MGP_AJ_T0003474.1 MGP_AJ_G0003175.1 mouse_genomes_project 13 71522428 71532451 + Slc6a19os antisense antisense MGP_AJ_T0003475.1 MGP_AJ_G0003175.1 mouse_genomes_project 13 71526318 71531512 + Slc6a19os antisense antisense MGP_AJ_T0012925.1 MGP_AJ_G0011020.1 mouse_genomes_project 13 31168052 31169418 - processed_pseudogene processed_pseudogene MGP_AJ_T0037246.1 MGP_AJ_G0020591.1 mouse_genomes_project 13 56937108 56937801 - Agtpbp1 protein_coding processed_transcript MGP_AJ_T0037247.1 MGP_AJ_G0020591.1 mouse_genomes_project 13 56937109 57048634 - MGP_AJ_P0037247 Agtpbp1 protein_coding protein_coding MGP_AJ_T0037248.1 MGP_AJ_G0020591.1 mouse_genomes_project 13 56937111 57023825 - MGP_AJ_P0037248 Agtpbp1 protein_coding protein_coding MGP_AJ_T0037249.1 MGP_AJ_G0020591.1 mouse_genomes_project 13 56937451 57048267 - MGP_AJ_P0037249 Agtpbp1 protein_coding nonsense_mediated_decay MGP_AJ_T0037250.1 MGP_AJ_G0020591.1 mouse_genomes_project 13 56937451 57048631 - MGP_AJ_P0037250 Agtpbp1 protein_coding nonsense_mediated_decay MGP_AJ_T0037251.1 MGP_AJ_G0020591.1 mouse_genomes_project 13 56942442 57035790 - MGP_AJ_P0037251 Agtpbp1 protein_coding protein_coding MGP_AJ_T0037252.1 MGP_AJ_G0020591.1 mouse_genomes_project 13 56962316 56971287 - Agtpbp1 protein_coding processed_transcript MGP_AJ_T0037253.1 MGP_AJ_G0020591.1 mouse_genomes_project 13 56970529 57048640 - MGP_AJ_P0037253 Agtpbp1 protein_coding nonsense_mediated_decay MGP_AJ_T0037254.1 MGP_AJ_G0020591.1 mouse_genomes_project 13 56984551 57048631 - MGP_AJ_P0037254 Agtpbp1 protein_coding protein_coding MGP_AJ_T0037255.1 MGP_AJ_G0020591.1 mouse_genomes_project 13 56984561 57048639 - MGP_AJ_P0037255 Agtpbp1 protein_coding protein_coding MGP_AJ_T0037256.1 MGP_AJ_G0020591.1 mouse_genomes_project 13 57002451 57005036 - Agtpbp1 protein_coding processed_transcript MGP_AJ_T0037257.1 MGP_AJ_G0020591.1 mouse_genomes_project 13 57003477 57048656 - MGP_AJ_P0037257 Agtpbp1 protein_coding nonsense_mediated_decay MGP_AJ_T0037258.1 MGP_AJ_G0020591.1 mouse_genomes_project 13 57005047 57024707 - Agtpbp1 protein_coding processed_transcript MGP_AJ_T0037259.1 MGP_AJ_G0020591.1 mouse_genomes_project 13 57008563 57048634 - MGP_AJ_P0037259 Agtpbp1 protein_coding nonsense_mediated_decay MGP_AJ_T0037260.1 MGP_AJ_G0020591.1 mouse_genomes_project 13 57019106 57048624 - MGP_AJ_P0037260 Agtpbp1 protein_coding protein_coding MGP_AJ_T0037261.1 MGP_AJ_G0020591.1 mouse_genomes_project 13 57021819 57048692 - MGP_AJ_P0037261 Agtpbp1 protein_coding protein_coding MGP_AJ_T0037262.1 MGP_AJ_G0020591.1 mouse_genomes_project 13 57022541 57048645 - MGP_AJ_P0037262 Agtpbp1 protein_coding protein_coding MGP_AJ_T0037263.1 MGP_AJ_G0020591.1 mouse_genomes_project 13 57022541 57050103 - MGP_AJ_P0037263 Agtpbp1 protein_coding protein_coding MGP_AJ_T0037264.1 MGP_AJ_G0020591.1 mouse_genomes_project 13 57022549 57048264 - MGP_AJ_P0037264 Agtpbp1 protein_coding protein_coding MGP_AJ_T0037265.1 MGP_AJ_G0020591.1 mouse_genomes_project 13 57022679 57077660 - MGP_AJ_P0037265 Agtpbp1 protein_coding protein_coding MGP_AJ_T0037266.1 MGP_AJ_G0020591.1 mouse_genomes_project 13 57026887 57048382 - MGP_AJ_P0037266 Agtpbp1 protein_coding protein_coding MGP_AJ_T0037267.1 MGP_AJ_G0020591.1 mouse_genomes_project 13 57072646 57077676 - Agtpbp1 protein_coding processed_transcript MGP_AJ_T0036416.1 MGP_AJ_G0020279.1 mouse_genomes_project 13 19368938 19369737 + MGP_AJ_P0036416 Vmn1r189 protein_coding protein_coding MGP_AJ_T0037024.1 MGP_AJ_G0020529.1 mouse_genomes_project 13 52047275 52089403 + MGP_AJ_P0037024 Faf2 protein_coding protein_coding MGP_AJ_T0037025.1 MGP_AJ_G0020529.1 mouse_genomes_project 13 52047295 52066863 + MGP_AJ_P0037025 Faf2 protein_coding nonsense_mediated_decay MGP_AJ_T0037026.1 MGP_AJ_G0020529.1 mouse_genomes_project 13 52047315 52086921 + MGP_AJ_P0037026 Faf2 protein_coding protein_coding MGP_AJ_T0037027.1 MGP_AJ_G0020529.1 mouse_genomes_project 13 52047326 52073751 + MGP_AJ_P0037027 Faf2 protein_coding protein_coding MGP_AJ_T0037028.1 MGP_AJ_G0020529.1 mouse_genomes_project 13 52047326 52073640 + MGP_AJ_P0037028 Faf2 protein_coding protein_coding MGP_AJ_T0037029.1 MGP_AJ_G0020529.1 mouse_genomes_project 13 52047329 52081682 + MGP_AJ_P0037029 Faf2 protein_coding protein_coding MGP_AJ_T0037030.1 MGP_AJ_G0020529.1 mouse_genomes_project 13 52066865 52080844 + MGP_AJ_P0037030 Faf2 protein_coding nonsense_mediated_decay MGP_AJ_T0037031.1 MGP_AJ_G0020529.1 mouse_genomes_project 13 52076763 52080869 + Faf2 protein_coding retained_intron MGP_AJ_T0012879.1 MGP_AJ_G0010974.1 mouse_genomes_project 13 13913876 13914834 + processed_pseudogene processed_pseudogene MGP_AJ_T0037305.1 MGP_AJ_G0020609.1 mouse_genomes_project 13 58427502 58429973 - MGP_AJ_P0037305 Ctla2a protein_coding protein_coding MGP_AJ_T0037829.1 MGP_AJ_G0020802.1 mouse_genomes_project 13 94229619 94258275 + MGP_AJ_P0037829 Poc5 protein_coding protein_coding MGP_AJ_T0036374.1 MGP_AJ_G0020249.1 mouse_genomes_project 13 18607452 18608217 - MGP_AJ_P0036374 Hist1h4k protein_coding protein_coding MGP_AJ_T0037348.1 MGP_AJ_G0020625.1 mouse_genomes_project 13 61486017 61524957 + MGP_AJ_P0037348 Ercc6l2 protein_coding protein_coding MGP_AJ_T0037349.1 MGP_AJ_G0020625.1 mouse_genomes_project 13 61486079 61544525 + MGP_AJ_P0037349 Ercc6l2 protein_coding protein_coding MGP_AJ_T0037350.1 MGP_AJ_G0020625.1 mouse_genomes_project 13 61486111 61507788 + Ercc6l2 protein_coding processed_transcript MGP_AJ_T0037351.1 MGP_AJ_G0020625.1 mouse_genomes_project 13 61486111 61541559 + MGP_AJ_P0037351 Ercc6l2 protein_coding protein_coding MGP_AJ_T0037352.1 MGP_AJ_G0020625.1 mouse_genomes_project 13 61486111 61524922 + MGP_AJ_P0037352 Ercc6l2 protein_coding protein_coding MGP_AJ_T0037353.1 MGP_AJ_G0020625.1 mouse_genomes_project 13 61490374 61541203 + MGP_AJ_P0037353 Ercc6l2 protein_coding nonsense_mediated_decay MGP_AJ_T0037354.1 MGP_AJ_G0020625.1 mouse_genomes_project 13 61490376 61529445 + MGP_AJ_P0037354 Ercc6l2 protein_coding protein_coding MGP_AJ_T0037355.1 MGP_AJ_G0020625.1 mouse_genomes_project 13 61490376 61541580 + MGP_AJ_P0037355 Ercc6l2 protein_coding protein_coding MGP_AJ_T0037356.1 MGP_AJ_G0020625.1 mouse_genomes_project 13 61490699 61512451 + MGP_AJ_P0037356 Ercc6l2 protein_coding nonsense_mediated_decay MGP_AJ_T0037357.1 MGP_AJ_G0020625.1 mouse_genomes_project 13 61542434 61544432 + Ercc6l2 protein_coding processed_transcript MGP_AJ_T0037358.1 MGP_AJ_G0020625.1 mouse_genomes_project 13 61544389 61572310 + MGP_AJ_P0037358 Ercc6l2 protein_coding protein_coding MGP_AJ_T0037963.1 MGP_AJ_G0020846.1 mouse_genomes_project 13 98724648 98735393 - MGP_AJ_P0037963 Ccnb1 protein_coding protein_coding MGP_AJ_T0037964.1 MGP_AJ_G0020846.1 mouse_genomes_project 13 98724730 98735309 - MGP_AJ_P0037964 Ccnb1 protein_coding protein_coding MGP_AJ_T0037965.1 MGP_AJ_G0020846.1 mouse_genomes_project 13 98724745 98730276 - Ccnb1 protein_coding retained_intron MGP_AJ_T0037966.1 MGP_AJ_G0020846.1 mouse_genomes_project 13 98726595 98730856 - Ccnb1 protein_coding retained_intron MGP_AJ_T0037967.1 MGP_AJ_G0020846.1 mouse_genomes_project 13 98727349 98735225 - MGP_AJ_P0037967 Ccnb1 protein_coding protein_coding MGP_AJ_T0037968.1 MGP_AJ_G0020846.1 mouse_genomes_project 13 98731866 98734426 - Ccnb1 protein_coding retained_intron MGP_AJ_T0037969.1 MGP_AJ_G0020846.1 mouse_genomes_project 13 98734359 98735298 - Ccnb1 protein_coding retained_intron MGP_AJ_T0037525.1 MGP_AJ_G0020711.1 mouse_genomes_project 13 71789483 71818891 + MGP_AJ_P0037525 Zdhhc11 protein_coding protein_coding MGP_AJ_T0037556.1 MGP_AJ_G0020724.1 mouse_genomes_project 13 72577692 72616076 + MGP_AJ_P0037556 unknown_likely_coding unknown_likely_coding MGP_AJ_T0036673.1 MGP_AJ_G0020405.1 mouse_genomes_project 13 31772210 31796869 - MGP_AJ_P0036673 Pxdc1 protein_coding protein_coding MGP_AJ_T0036674.1 MGP_AJ_G0020405.1 mouse_genomes_project 13 31772210 31796879 - MGP_AJ_P0036674 Pxdc1 protein_coding nonsense_mediated_decay MGP_AJ_T0036675.1 MGP_AJ_G0020405.1 mouse_genomes_project 13 31772211 31796879 - MGP_AJ_P0036675 Pxdc1 protein_coding nonsense_mediated_decay MGP_AJ_T0036676.1 MGP_AJ_G0020405.1 mouse_genomes_project 13 31773256 31792777 - MGP_AJ_P0036676 Pxdc1 protein_coding protein_coding MGP_AJ_T0012940.1 MGP_AJ_G0011035.1 mouse_genomes_project 13 66598511 66599265 + processed_pseudogene processed_pseudogene MGP_AJ_T0037163.1 MGP_AJ_G0020563.1 mouse_genomes_project 13 53177700 53189375 + MGP_AJ_P0037163 Txndc15 protein_coding protein_coding MGP_AJ_T0036818.1 MGP_AJ_G0020460.1 mouse_genomes_project 13 42253244 42255718 + MGP_AJ_P0036818 Gm9817 protein_coding protein_coding MGP_AJ_T0012902.1 MGP_AJ_G0010997.1 mouse_genomes_project 13 21472434 21472769 - processed_pseudogene processed_pseudogene MGP_AJ_T0036246.1 MGP_AJ_G0020194.1 mouse_genomes_project 13 10483902 10677728 + MGP_AJ_P0036246 Lyst protein_coding protein_coding MGP_AJ_T0036247.1 MGP_AJ_G0020194.1 mouse_genomes_project 13 10508771 10679092 + MGP_AJ_P0036247 Lyst protein_coding unknown_likely_coding MGP_AJ_T0012955.1 MGP_AJ_G0011050.1 mouse_genomes_project 13 85564891 85565897 + processed_pseudogene processed_pseudogene MGP_AJ_T0037110.1 MGP_AJ_G0020543.1 mouse_genomes_project 13 52767722 52770480 - MGP_AJ_P0037110 Rab24 protein_coding protein_coding MGP_AJ_T0038073.1 MGP_AJ_G0020875.1 mouse_genomes_project 13 106272645 106347508 + MGP_AJ_P0038073 Depdc1b protein_coding protein_coding MGP_AJ_T0038074.1 MGP_AJ_G0020875.1 mouse_genomes_project 13 106272681 106280834 + Depdc1b protein_coding retained_intron MGP_AJ_T0038075.1 MGP_AJ_G0020875.1 mouse_genomes_project 13 106272693 106359312 + MGP_AJ_P0038075 Depdc1b protein_coding nonsense_mediated_decay MGP_AJ_T0038076.1 MGP_AJ_G0020875.1 mouse_genomes_project 13 106272735 106346635 + MGP_AJ_P0038076 Depdc1b protein_coding unknown_likely_coding MGP_AJ_T0038077.1 MGP_AJ_G0020875.1 mouse_genomes_project 13 106272735 106346635 + MGP_AJ_P0038077 Depdc1b protein_coding protein_coding MGP_AJ_T0038078.1 MGP_AJ_G0020875.1 mouse_genomes_project 13 106282893 106325399 + Depdc1b protein_coding processed_transcript MGP_AJ_T0038079.1 MGP_AJ_G0020875.1 mouse_genomes_project 13 106313804 106330469 + Depdc1b protein_coding retained_intron MGP_AJ_T0009957.1 MGP_AJ_G0008079.1 mouse_genomes_project 13 91617176 91617237 + Mir5624 miRNA miRNA MGP_AJ_T0036250.1 MGP_AJ_G0020196.1 mouse_genomes_project 13 10843749 10895832 + MGP_AJ_P0036250 B3galnt2 protein_coding protein_coding MGP_AJ_T0037486.1 MGP_AJ_G0020695.1 mouse_genomes_project 13 69759993 69765791 - MGP_AJ_P0037486 Irx1 protein_coding protein_coding MGP_AJ_T0012890.1 MGP_AJ_G0010985.1 mouse_genomes_project 13 19075584 19077506 - processed_pseudogene processed_pseudogene MGP_AJ_T0012957.1 MGP_AJ_G0011052.1 mouse_genomes_project 13 87467266 87467867 + processed_pseudogene processed_pseudogene MGP_AJ_T0036429.1 MGP_AJ_G0020292.1 mouse_genomes_project 13 20090694 20091591 - MGP_AJ_P0036429 Vmn1r220 protein_coding protein_coding MGP_AJ_T0036364.1 MGP_AJ_G0020241.1 mouse_genomes_project 13 18476223 18477208 - MGP_AJ_P0036364 Olfr1362 protein_coding protein_coding MGP_AJ_T0037494.1 MGP_AJ_G0020698.1 mouse_genomes_project 13 71134831 71135119 + MGP_AJ_P0037494 Gm10263 protein_coding protein_coding MGP_AJ_T0037212.1 MGP_AJ_G0020581.1 mouse_genomes_project 13 55608008 55610686 - MGP_AJ_P0037212 Hnrnpa0 protein_coding protein_coding MGP_AJ_T0099448.1 MGP_AJ_G0037414.1 mouse_genomes_project 13 21553707 21553810 - Gm22013 snRNA snRNA MGP_AJ_T0037063.1 MGP_AJ_G0020535.1 mouse_genomes_project 13 52216278 52223679 + MGP_AJ_P0037063 Tspan17 protein_coding protein_coding MGP_AJ_T0037064.1 MGP_AJ_G0020535.1 mouse_genomes_project 13 52216304 52223671 + MGP_AJ_P0037064 Tspan17 protein_coding protein_coding MGP_AJ_T0037065.1 MGP_AJ_G0020535.1 mouse_genomes_project 13 52216364 52223089 + MGP_AJ_P0037065 Tspan17 protein_coding protein_coding MGP_AJ_T0037066.1 MGP_AJ_G0020535.1 mouse_genomes_project 13 52216496 52223020 + MGP_AJ_P0037066 Tspan17 protein_coding protein_coding MGP_AJ_T0037067.1 MGP_AJ_G0020535.1 mouse_genomes_project 13 52216496 52223124 + MGP_AJ_P0037067 Tspan17 protein_coding protein_coding MGP_AJ_T0037068.1 MGP_AJ_G0020535.1 mouse_genomes_project 13 52216546 52222050 + MGP_AJ_P0037068 Tspan17 protein_coding protein_coding MGP_AJ_T0037069.1 MGP_AJ_G0020535.1 mouse_genomes_project 13 52219641 52223067 + MGP_AJ_P0037069 Tspan17 protein_coding protein_coding MGP_AJ_T0037070.1 MGP_AJ_G0020535.1 mouse_genomes_project 13 52219772 52223678 + MGP_AJ_P0037070 Tspan17 protein_coding protein_coding MGP_AJ_T0037071.1 MGP_AJ_G0020535.1 mouse_genomes_project 13 52222285 52223671 + Tspan17 protein_coding retained_intron MGP_AJ_T0012906.1 MGP_AJ_G0011001.1 mouse_genomes_project 13 22679001 22679693 - processed_pseudogene processed_pseudogene MGP_AJ_T0036238.1 MGP_AJ_G0020188.1 mouse_genomes_project 13 9057542 9108086 - MGP_AJ_P0036238 Edaradd protein_coding protein_coding MGP_AJ_T0038179.1 MGP_AJ_G0020911.1 mouse_genomes_project 13 114288680 114299906 - MGP_AJ_P0038179 Isl1 protein_coding protein_coding MGP_AJ_T0038180.1 MGP_AJ_G0020911.1 mouse_genomes_project 13 114289731 114299639 - MGP_AJ_P0038180 Isl1 protein_coding protein_coding MGP_AJ_T0038181.1 MGP_AJ_G0020911.1 mouse_genomes_project 13 114289863 114293574 - Isl1 protein_coding retained_intron MGP_AJ_T0038182.1 MGP_AJ_G0020911.1 mouse_genomes_project 13 114293268 114296621 - Isl1 protein_coding processed_transcript MGP_AJ_T0038183.1 MGP_AJ_G0020911.1 mouse_genomes_project 13 114297115 114299902 - Isl1 protein_coding retained_intron MGP_AJ_T0036874.1 MGP_AJ_G0020483.1 mouse_genomes_project 13 46286450 46398296 - MGP_AJ_P0036874 Wnk2 protein_coding protein_coding MGP_AJ_T0036875.1 MGP_AJ_G0020483.1 mouse_genomes_project 13 46286450 46398296 - MGP_AJ_P0036875 Wnk2 protein_coding protein_coding MGP_AJ_T0036876.1 MGP_AJ_G0020483.1 mouse_genomes_project 13 46286450 46398296 - MGP_AJ_P0036876 Wnk2 protein_coding protein_coding MGP_AJ_T0036877.1 MGP_AJ_G0020483.1 mouse_genomes_project 13 46286450 46398294 - MGP_AJ_P0036877 Wnk2 protein_coding protein_coding MGP_AJ_T0036878.1 MGP_AJ_G0020483.1 mouse_genomes_project 13 46286456 46397514 - MGP_AJ_P0036878 Wnk2 protein_coding protein_coding MGP_AJ_T0036879.1 MGP_AJ_G0020483.1 mouse_genomes_project 13 46286457 46397514 - MGP_AJ_P0036879 Wnk2 protein_coding protein_coding MGP_AJ_T0036880.1 MGP_AJ_G0020483.1 mouse_genomes_project 13 46287756 46311217 - MGP_AJ_P0036880 Wnk2 protein_coding protein_coding MGP_AJ_T0036881.1 MGP_AJ_G0020483.1 mouse_genomes_project 13 46287767 46329549 - MGP_AJ_P0036881 Wnk2 protein_coding protein_coding MGP_AJ_T0036882.1 MGP_AJ_G0020483.1 mouse_genomes_project 13 46288128 46398296 - MGP_AJ_P0036882 Wnk2 protein_coding protein_coding MGP_AJ_T0036883.1 MGP_AJ_G0020483.1 mouse_genomes_project 13 46289021 46398296 - MGP_AJ_P0036883 Wnk2 protein_coding protein_coding MGP_AJ_T0036884.1 MGP_AJ_G0020483.1 mouse_genomes_project 13 46311662 46321347 - MGP_AJ_P0036884 Wnk2 protein_coding nonsense_mediated_decay MGP_AJ_T0037456.1 MGP_AJ_G0020679.1 mouse_genomes_project 13 65574308 65575323 + MGP_AJ_P0037456 protein_coding protein_coding MGP_AJ_T0017345.1 MGP_AJ_G0015224.1 mouse_genomes_project 13 20564968 20568957 - Gm11335 processed_transcript processed_transcript MGP_AJ_T0036905.1 MGP_AJ_G0020491.1 mouse_genomes_project 13 46758507 46784621 + MGP_AJ_P0036905 Ecm2 protein_coding protein_coding MGP_AJ_T0037563.1 MGP_AJ_G0020729.1 mouse_genomes_project 13 73799626 73878817 - MGP_AJ_P0037563 Rhobtb3 protein_coding protein_coding MGP_AJ_T0037564.1 MGP_AJ_G0020729.1 mouse_genomes_project 13 73802139 73815845 - Rhobtb3 protein_coding processed_transcript MGP_AJ_T0037565.1 MGP_AJ_G0020729.1 mouse_genomes_project 13 73850272 73878875 - MGP_AJ_P0037565 Rhobtb3 protein_coding protein_coding MGP_AJ_T0006552.1 MGP_AJ_G0005429.1 mouse_genomes_project 13 28750685 28751887 + Gm11378 lincRNA lincRNA MGP_AJ_T0036625.1 MGP_AJ_G0020386.1 mouse_genomes_project 13 30156478 30171194 + MGP_AJ_P0036625 Serpinb9 protein_coding protein_coding MGP_AJ_T0036626.1 MGP_AJ_G0020386.1 mouse_genomes_project 13 30157777 30171192 + MGP_AJ_P0036626 Serpinb9 protein_coding protein_coding MGP_AJ_T0036848.1 MGP_AJ_G0020473.1 mouse_genomes_project 13 44249614 44291853 + MGP_AJ_P0036848 Kdm1b protein_coding protein_coding MGP_AJ_T0036849.1 MGP_AJ_G0020473.1 mouse_genomes_project 13 44249685 44259819 + MGP_AJ_P0036849 Kdm1b protein_coding protein_coding MGP_AJ_T0036850.1 MGP_AJ_G0020473.1 mouse_genomes_project 13 44269947 44291849 + MGP_AJ_P0036850 Kdm1b protein_coding protein_coding MGP_AJ_T0036851.1 MGP_AJ_G0020473.1 mouse_genomes_project 13 44271181 44279328 + Kdm1b protein_coding retained_intron MGP_AJ_T0036852.1 MGP_AJ_G0020473.1 mouse_genomes_project 13 44273496 44291866 + Kdm1b protein_coding processed_transcript MGP_AJ_T0037313.1 MGP_AJ_G0020616.1 mouse_genomes_project 13 58893814 58899517 - MGP_AJ_P0037313 Cts7 protein_coding protein_coding MGP_AJ_T0036324.1 MGP_AJ_G0020223.1 mouse_genomes_project 13 17914634 17915585 - MGP_AJ_P0036324 Olfr1370 protein_coding protein_coding MGP_AJ_T0038101.1 MGP_AJ_G0020878.1 mouse_genomes_project 13 108256202 108258167 - MGP_AJ_P0038101 protein_coding protein_coding MGP_AJ_T0038001.1 MGP_AJ_G0020851.1 mouse_genomes_project 13 101701278 101724114 - MGP_AJ_P0038001 Srek1 protein_coding protein_coding MGP_AJ_T0006591.1 MGP_AJ_G0005455.1 mouse_genomes_project 13 52354111 52357597 - 4930526F13Rik lincRNA lincRNA MGP_AJ_T0036772.1 MGP_AJ_G0020447.1 mouse_genomes_project 13 39220642 39348506 + MGP_AJ_P0036772 Hivep1 protein_coding protein_coding MGP_AJ_T0038100.1 MGP_AJ_G0020877.1 mouse_genomes_project 13 108007009 108232476 - MGP_AJ_P0038100 Rab3c protein_coding protein_coding MGP_AJ_T0003430.1 MGP_AJ_G0003145.1 mouse_genomes_project 13 18808635 18813451 - Gm11280 antisense antisense MGP_AJ_T0037915.1 MGP_AJ_G0020834.1 mouse_genomes_project 13 98017512 98029690 + MGP_AJ_P0037915 Serf1 protein_coding protein_coding MGP_AJ_T0037916.1 MGP_AJ_G0020834.1 mouse_genomes_project 13 98017585 98026461 + MGP_AJ_P0037916 Serf1 protein_coding protein_coding MGP_AJ_T0037917.1 MGP_AJ_G0020834.1 mouse_genomes_project 13 98017655 98030023 + MGP_AJ_P0037917 Serf1 protein_coding protein_coding MGP_AJ_T0037918.1 MGP_AJ_G0020834.1 mouse_genomes_project 13 98017841 98029690 + MGP_AJ_P0037918 Serf1 protein_coding protein_coding MGP_AJ_T0037919.1 MGP_AJ_G0020834.1 mouse_genomes_project 13 98017896 98029683 + MGP_AJ_P0037919 Serf1 protein_coding protein_coding MGP_AJ_T0036396.1 MGP_AJ_G0020263.1 mouse_genomes_project 13 18853007 18862468 + MGP_AJ_P0036396 Pom121l2 protein_coding protein_coding MGP_AJ_T0036397.1 MGP_AJ_G0020263.1 mouse_genomes_project 13 18853333 18856293 + MGP_AJ_P0036397 Pom121l2 protein_coding protein_coding MGP_AJ_T0036508.1 MGP_AJ_G0020328.1 mouse_genomes_project 13 21822708 21832866 - MGP_AJ_P0036508 Gmnn protein_coding protein_coding MGP_AJ_T0036509.1 MGP_AJ_G0020328.1 mouse_genomes_project 13 21822708 21832804 - MGP_AJ_P0036509 Gmnn protein_coding protein_coding MGP_AJ_T0036510.1 MGP_AJ_G0020328.1 mouse_genomes_project 13 21822954 21832419 - MGP_AJ_P0036510 Gmnn protein_coding protein_coding MGP_AJ_T0036511.1 MGP_AJ_G0020328.1 mouse_genomes_project 13 21823051 21832383 - MGP_AJ_P0036511 Gmnn protein_coding protein_coding MGP_AJ_T0036512.1 MGP_AJ_G0020328.1 mouse_genomes_project 13 21824615 21832840 - MGP_AJ_P0036512 Gmnn protein_coding nonsense_mediated_decay MGP_AJ_T0036948.1 MGP_AJ_G0020508.1 mouse_genomes_project 13 49121802 49218852 - MGP_AJ_P0036948 Sema4d protein_coding protein_coding MGP_AJ_T0036949.1 MGP_AJ_G0020508.1 mouse_genomes_project 13 49121802 49218778 - MGP_AJ_P0036949 Sema4d protein_coding protein_coding MGP_AJ_T0036950.1 MGP_AJ_G0020508.1 mouse_genomes_project 13 49121806 49159638 - MGP_AJ_P0036950 Sema4d protein_coding protein_coding MGP_AJ_T0036951.1 MGP_AJ_G0020508.1 mouse_genomes_project 13 49132064 49134726 - Sema4d protein_coding retained_intron MGP_AJ_T0036952.1 MGP_AJ_G0020508.1 mouse_genomes_project 13 49148541 49173968 - Sema4d protein_coding processed_transcript MGP_AJ_T0036953.1 MGP_AJ_G0020508.1 mouse_genomes_project 13 49148541 49173864 - Sema4d protein_coding processed_transcript MGP_AJ_T0036954.1 MGP_AJ_G0020508.1 mouse_genomes_project 13 49150109 49177214 - Sema4d protein_coding processed_transcript MGP_AJ_T0036955.1 MGP_AJ_G0020508.1 mouse_genomes_project 13 49150156 49179814 - Sema4d protein_coding processed_transcript MGP_AJ_T0036956.1 MGP_AJ_G0020508.1 mouse_genomes_project 13 49150176 49181851 - Sema4d protein_coding processed_transcript MGP_AJ_T0036957.1 MGP_AJ_G0020508.1 mouse_genomes_project 13 49150199 49181717 - Sema4d protein_coding processed_transcript MGP_AJ_T0036958.1 MGP_AJ_G0020508.1 mouse_genomes_project 13 49150226 49173775 - Sema4d protein_coding processed_transcript MGP_AJ_T0036959.1 MGP_AJ_G0020508.1 mouse_genomes_project 13 49150275 49202188 - Sema4d protein_coding processed_transcript MGP_AJ_T0036960.1 MGP_AJ_G0020508.1 mouse_genomes_project 13 49150308 49218769 - Sema4d protein_coding processed_transcript MGP_AJ_T0006534.1 MGP_AJ_G0005418.1 mouse_genomes_project 13 26193412 26194677 + A330102I10Rik lincRNA lincRNA MGP_AJ_T0006535.1 MGP_AJ_G0005418.1 mouse_genomes_project 13 26193485 26207729 + A330102I10Rik lincRNA lincRNA MGP_AJ_T0006536.1 MGP_AJ_G0005418.1 mouse_genomes_project 13 26195304 26207797 + A330102I10Rik lincRNA lincRNA MGP_AJ_T0006537.1 MGP_AJ_G0005418.1 mouse_genomes_project 13 26195719 26218820 + A330102I10Rik lincRNA lincRNA MGP_AJ_T0037726.1 MGP_AJ_G0020765.1 mouse_genomes_project 13 89728081 89971560 - MGP_AJ_P0037726 Rasgrf2 protein_coding protein_coding MGP_AJ_T0037727.1 MGP_AJ_G0020765.1 mouse_genomes_project 13 89732110 89971560 - MGP_AJ_P0037727 Rasgrf2 protein_coding protein_coding MGP_AJ_T0037728.1 MGP_AJ_G0020765.1 mouse_genomes_project 13 89804747 89829549 - MGP_AJ_P0037728 Rasgrf2 protein_coding protein_coding MGP_AJ_T0037729.1 MGP_AJ_G0020765.1 mouse_genomes_project 13 89856979 89859392 - MGP_AJ_P0037729 Rasgrf2 protein_coding protein_coding MGP_AJ_T0037730.1 MGP_AJ_G0020765.1 mouse_genomes_project 13 89856979 89971722 - MGP_AJ_P0037730 Rasgrf2 protein_coding protein_coding MGP_AJ_T0037004.1 MGP_AJ_G0020524.1 mouse_genomes_project 13 51977648 51990367 - 4833439L19Rik protein_coding processed_transcript MGP_AJ_T0037005.1 MGP_AJ_G0020524.1 mouse_genomes_project 13 51977864 51990390 - MGP_AJ_P0037005 4833439L19Rik protein_coding protein_coding MGP_AJ_T0037006.1 MGP_AJ_G0020524.1 mouse_genomes_project 13 51981231 51990325 - 4833439L19Rik protein_coding retained_intron MGP_AJ_T0037007.1 MGP_AJ_G0020524.1 mouse_genomes_project 13 51981405 51990372 - 4833439L19Rik protein_coding retained_intron MGP_AJ_T0037008.1 MGP_AJ_G0020524.1 mouse_genomes_project 13 51981624 51990364 - MGP_AJ_P0037008 4833439L19Rik protein_coding protein_coding MGP_AJ_T0037009.1 MGP_AJ_G0020524.1 mouse_genomes_project 13 51986608 51990378 - 4833439L19Rik protein_coding retained_intron MGP_AJ_T0037010.1 MGP_AJ_G0020524.1 mouse_genomes_project 13 51986730 51990390 - MGP_AJ_P0037010 4833439L19Rik protein_coding protein_coding MGP_AJ_T0037011.1 MGP_AJ_G0020524.1 mouse_genomes_project 13 51986745 51990359 - MGP_AJ_P0037011 4833439L19Rik protein_coding protein_coding MGP_AJ_T0036823.1 MGP_AJ_G0020463.1 mouse_genomes_project 13 42724763 43150724 - MGP_AJ_P0036823 Atxn1 protein_coding protein_coding MGP_AJ_T0036824.1 MGP_AJ_G0020463.1 mouse_genomes_project 13 42724763 43150724 - MGP_AJ_P0036824 Atxn1 protein_coding protein_coding MGP_AJ_T0036825.1 MGP_AJ_G0020463.1 mouse_genomes_project 13 42724763 43150724 - MGP_AJ_P0036825 Atxn1 protein_coding protein_coding MGP_AJ_T0037567.1 MGP_AJ_G0020731.1 mouse_genomes_project 13 73942246 73959308 - MGP_AJ_P0037567 Rfesd protein_coding protein_coding MGP_AJ_T0037568.1 MGP_AJ_G0020731.1 mouse_genomes_project 13 73942246 73959202 - MGP_AJ_P0037568 Rfesd protein_coding protein_coding MGP_AJ_T0037569.1 MGP_AJ_G0020731.1 mouse_genomes_project 13 73942248 73959158 - MGP_AJ_P0037569 Rfesd protein_coding protein_coding MGP_AJ_T0036826.1 MGP_AJ_G0020464.1 mouse_genomes_project 13 43374547 43390218 - MGP_AJ_P0036826 Gm10113 protein_coding protein_coding MGP_AJ_T0012944.1 MGP_AJ_G0011039.1 mouse_genomes_project 13 71654628 71655072 + processed_pseudogene processed_pseudogene MGP_AJ_T0037701.1 MGP_AJ_G0020757.1 mouse_genomes_project 13 88417575 88417941 + MGP_AJ_P0037701 Gm21726 protein_coding protein_coding MGP_AJ_T0000892.1 MGP_AJ_G0000826.1 mouse_genomes_project 13 92443791 92444439 + TEC TEC MGP_AJ_T0037433.1 MGP_AJ_G0020669.1 mouse_genomes_project 13 65191506 65228216 - MGP_AJ_P0037433 Gm26965 protein_coding nonsense_mediated_decay MGP_AJ_T0036424.1 MGP_AJ_G0020287.1 mouse_genomes_project 13 19846164 19849170 - MGP_AJ_P0036424 Vmn1r212 protein_coding protein_coding MGP_AJ_T0036426.1 MGP_AJ_G0020289.1 mouse_genomes_project 13 20000251 20001423 + MGP_AJ_P0036426 Vmn1r214 protein_coding protein_coding MGP_AJ_T0006654.1 MGP_AJ_G0005501.1 mouse_genomes_project 13 116620264 116652266 + 1700003P14Rik lincRNA lincRNA MGP_AJ_T0006655.1 MGP_AJ_G0005501.1 mouse_genomes_project 13 116621056 116652188 + 1700003P14Rik lincRNA lincRNA MGP_AJ_T0006656.1 MGP_AJ_G0005501.1 mouse_genomes_project 13 116621072 116652191 + 1700003P14Rik lincRNA lincRNA MGP_AJ_T0006561.1 MGP_AJ_G0005436.1 mouse_genomes_project 13 36128729 36134491 - Gm26514 lincRNA lincRNA MGP_AJ_T0006613.1 MGP_AJ_G0005471.1 mouse_genomes_project 13 79678408 79683385 - Gm17259 lincRNA lincRNA MGP_AJ_T0009956.1 MGP_AJ_G0008078.1 mouse_genomes_project 13 89600268 89600417 + miRNA miRNA MGP_AJ_T0037148.1 MGP_AJ_G0020555.1 mouse_genomes_project 13 52978025 52983366 - MGP_AJ_P0037148 Dok3 protein_coding protein_coding MGP_AJ_T0037672.1 MGP_AJ_G0020751.1 mouse_genomes_project 13 83918928 83920573 - MGP_AJ_P0037672 Cox7c protein_coding protein_coding MGP_AJ_T0037673.1 MGP_AJ_G0020751.1 mouse_genomes_project 13 83918928 83921017 - MGP_AJ_P0037673 Cox7c protein_coding protein_coding MGP_AJ_T0037674.1 MGP_AJ_G0020751.1 mouse_genomes_project 13 83918933 83920460 - MGP_AJ_P0037674 Cox7c protein_coding protein_coding MGP_AJ_T0037675.1 MGP_AJ_G0020751.1 mouse_genomes_project 13 83919007 83920887 - Cox7c protein_coding processed_transcript MGP_AJ_T0037182.1 MGP_AJ_G0020572.1 mouse_genomes_project 13 53908536 53943494 + MGP_AJ_P0037182 Slc25a48 protein_coding unknown_likely_coding MGP_AJ_T0036411.1 MGP_AJ_G0020274.1 mouse_genomes_project 13 19217138 19218044 + MGP_AJ_P0036411 Vmn1r196 protein_coding protein_coding MGP_AJ_T0009916.1 MGP_AJ_G0008038.1 mouse_genomes_project 13 18251171 18251232 - Mir6942 miRNA miRNA MGP_AJ_T0009933.1 MGP_AJ_G0008055.1 mouse_genomes_project 13 45781719 45781813 - Mirlet7a-1 miRNA miRNA MGP_AJ_T0037929.1 MGP_AJ_G0020836.1 mouse_genomes_project 13 98047903 98108133 - MGP_AJ_P0037929 Naip2 protein_coding protein_coding MGP_AJ_T0037930.1 MGP_AJ_G0020836.1 mouse_genomes_project 13 98047903 98102377 - MGP_AJ_P0037930 Naip2 protein_coding protein_coding MGP_AJ_T0037931.1 MGP_AJ_G0020836.1 mouse_genomes_project 13 98048071 98108004 - MGP_AJ_P0037931 Naip2 protein_coding protein_coding MGP_AJ_T0037481.1 MGP_AJ_G0020693.1 mouse_genomes_project 13 68529810 68645425 - MGP_AJ_P0037481 Adamts16 protein_coding protein_coding MGP_AJ_T0037482.1 MGP_AJ_G0020693.1 mouse_genomes_project 13 68529818 68645389 - MGP_AJ_P0037482 Adamts16 protein_coding nonsense_mediated_decay MGP_AJ_T0037483.1 MGP_AJ_G0020693.1 mouse_genomes_project 13 68563355 68645425 - MGP_AJ_P0037483 Adamts16 protein_coding protein_coding MGP_AJ_T0037484.1 MGP_AJ_G0020693.1 mouse_genomes_project 13 68638485 68645422 - Adamts16 protein_coding retained_intron MGP_AJ_T0006634.1 MGP_AJ_G0005484.1 mouse_genomes_project 13 96365490 96366352 - Gm29501 lincRNA lincRNA MGP_AJ_T0000897.1 MGP_AJ_G0000831.1 mouse_genomes_project 13 99700782 99702951 - TEC TEC MGP_AJ_T0037747.1 MGP_AJ_G0020769.1 mouse_genomes_project 13 90265296 90281010 + MGP_AJ_P0037747 Ankrd34b protein_coding protein_coding MGP_AJ_T0037748.1 MGP_AJ_G0020769.1 mouse_genomes_project 13 90265741 90277703 + MGP_AJ_P0037748 Ankrd34b protein_coding protein_coding MGP_AJ_T0037749.1 MGP_AJ_G0020769.1 mouse_genomes_project 13 90266058 90280280 + MGP_AJ_P0037749 Ankrd34b protein_coding protein_coding MGP_AJ_T0037372.1 MGP_AJ_G0020632.1 mouse_genomes_project 13 62053493 62060549 - MGP_AJ_P0037372 Ctsl protein_coding protein_coding MGP_AJ_T0036941.1 MGP_AJ_G0020506.1 mouse_genomes_project 13 49070925 49104397 + MGP_AJ_P0036941 Secisbp2 protein_coding protein_coding MGP_AJ_T0036942.1 MGP_AJ_G0020506.1 mouse_genomes_project 13 49070969 49085262 + MGP_AJ_P0036942 Secisbp2 protein_coding protein_coding MGP_AJ_T0036943.1 MGP_AJ_G0020506.1 mouse_genomes_project 13 49071025 49076216 + Secisbp2 protein_coding processed_transcript MGP_AJ_T0036944.1 MGP_AJ_G0020506.1 mouse_genomes_project 13 49071025 49084351 + Secisbp2 protein_coding processed_transcript MGP_AJ_T0036945.1 MGP_AJ_G0020506.1 mouse_genomes_project 13 49100085 49102882 + Secisbp2 protein_coding retained_intron MGP_AJ_T0036946.1 MGP_AJ_G0020506.1 mouse_genomes_project 13 49102125 49103842 + Secisbp2 protein_coding retained_intron MGP_AJ_T0036277.1 MGP_AJ_G0020202.1 mouse_genomes_project 13 11504788 11507518 - MGP_AJ_P0036277 Mrpl32 protein_coding protein_coding MGP_AJ_T0100728.1 MGP_AJ_G0038694.1 mouse_genomes_project 13 45815763 45815895 - Gm25232 snoRNA snoRNA MGP_AJ_T0037759.1 MGP_AJ_G0020775.1 mouse_genomes_project 13 90674226 90687664 + MGP_AJ_P0037759 Mtx3 protein_coding protein_coding MGP_AJ_T0012939.1 MGP_AJ_G0011034.1 mouse_genomes_project 13 65450547 65451329 + processed_pseudogene processed_pseudogene MGP_AJ_T0036696.1 MGP_AJ_G0020413.1 mouse_genomes_project 13 33062428 33075304 - MGP_AJ_P0036696 Rpp40 protein_coding protein_coding MGP_AJ_T0036697.1 MGP_AJ_G0020413.1 mouse_genomes_project 13 33065647 33067812 - MGP_AJ_P0036697 Rpp40 protein_coding protein_coding MGP_AJ_T0036698.1 MGP_AJ_G0020413.1 mouse_genomes_project 13 33065655 33075273 - Rpp40 protein_coding retained_intron MGP_AJ_T0036699.1 MGP_AJ_G0020413.1 mouse_genomes_project 13 33065658 33075289 - MGP_AJ_P0036699 Rpp40 protein_coding protein_coding MGP_AJ_T0102302.1 MGP_AJ_G0040044.1 mouse_genomes_project 13 19928641 19929543 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0037312.1 MGP_AJ_G0020615.1 mouse_genomes_project 13 58790104 58798559 - MGP_AJ_P0037312 Cts8 protein_coding protein_coding MGP_AJ_T0009927.1 MGP_AJ_G0008049.1 mouse_genomes_project 13 35259662 35259778 + Gm27387 miRNA miRNA MGP_AJ_T0003466.1 MGP_AJ_G0003170.1 mouse_genomes_project 13 64727435 65504638 + antisense antisense MGP_AJ_T0003468.1 MGP_AJ_G0003170.1 mouse_genomes_project 13 65479197 65506546 + antisense antisense MGP_AJ_T0003469.1 MGP_AJ_G0003170.1 mouse_genomes_project 13 65494026 65507670 + antisense antisense MGP_AJ_T0036833.1 MGP_AJ_G0020469.1 mouse_genomes_project 13 43880820 43929067 - MGP_AJ_P0036833 Nup153 protein_coding protein_coding MGP_AJ_T0036834.1 MGP_AJ_G0020469.1 mouse_genomes_project 13 43881990 43882868 - Nup153 protein_coding retained_intron MGP_AJ_T0036835.1 MGP_AJ_G0020469.1 mouse_genomes_project 13 43883760 43884930 - Nup153 protein_coding retained_intron MGP_AJ_T0036836.1 MGP_AJ_G0020469.1 mouse_genomes_project 13 43900534 43903057 - Nup153 protein_coding retained_intron MGP_AJ_T0036837.1 MGP_AJ_G0020469.1 mouse_genomes_project 13 43910882 43918243 - Nup153 protein_coding processed_transcript MGP_AJ_T0012950.1 MGP_AJ_G0011045.1 mouse_genomes_project 13 76256334 76257595 - processed_pseudogene processed_pseudogene MGP_AJ_T0009912.1 MGP_AJ_G0008034.1 mouse_genomes_project 13 3711439 3711549 - Gm22689 miRNA miRNA MGP_AJ_T0037287.1 MGP_AJ_G0020596.1 mouse_genomes_project 13 57205696 57213983 + MGP_AJ_P0037287 Spata31d1b protein_coding protein_coding MGP_AJ_T0102283.1 MGP_AJ_G0040025.1 mouse_genomes_project 13 18983063 18983385 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0037170.1 MGP_AJ_G0020567.1 mouse_genomes_project 13 53538565 53600736 - MGP_AJ_P0037170 H2afy protein_coding protein_coding MGP_AJ_T0037171.1 MGP_AJ_G0020567.1 mouse_genomes_project 13 53538565 53600736 - MGP_AJ_P0037171 H2afy protein_coding protein_coding MGP_AJ_T0037172.1 MGP_AJ_G0020567.1 mouse_genomes_project 13 53539113 53549504 - H2afy protein_coding retained_intron MGP_AJ_T0037173.1 MGP_AJ_G0020567.1 mouse_genomes_project 13 53539306 53555048 - H2afy protein_coding retained_intron MGP_AJ_T0037174.1 MGP_AJ_G0020567.1 mouse_genomes_project 13 53560545 53600635 - H2afy protein_coding processed_transcript MGP_AJ_T0037175.1 MGP_AJ_G0020567.1 mouse_genomes_project 13 53565072 53600545 - H2afy protein_coding retained_intron MGP_AJ_T0037176.1 MGP_AJ_G0020567.1 mouse_genomes_project 13 53568613 53601464 - H2afy protein_coding processed_transcript MGP_AJ_T0037177.1 MGP_AJ_G0020567.1 mouse_genomes_project 13 53568624 53599930 - H2afy protein_coding processed_transcript MGP_AJ_T0017346.1 MGP_AJ_G0015225.1 mouse_genomes_project 13 20808767 20810786 - 4930558J22Rik processed_transcript processed_transcript MGP_AJ_T0036141.1 MGP_AJ_G0020166.1 mouse_genomes_project 13 1172012 1190505 - MGP_AJ_P0036141 Akr1e1 protein_coding protein_coding MGP_AJ_T0036142.1 MGP_AJ_G0020166.1 mouse_genomes_project 13 1173747 1190505 - MGP_AJ_P0036142 Akr1e1 protein_coding protein_coding MGP_AJ_T0036143.1 MGP_AJ_G0020166.1 mouse_genomes_project 13 1182526 1190465 - Akr1e1 protein_coding processed_transcript MGP_AJ_T0009915.1 MGP_AJ_G0008037.1 mouse_genomes_project 13 14625856 14625987 + Mir466i miRNA miRNA MGP_AJ_T0036571.1 MGP_AJ_G0020360.1 mouse_genomes_project 13 24953429 24959767 + MGP_AJ_P0036571 protein_coding protein_coding MGP_AJ_T0099441.1 MGP_AJ_G0037407.1 mouse_genomes_project 13 11526136 11526249 - Gm25444 snRNA snRNA MGP_AJ_T0102295.1 MGP_AJ_G0040037.1 mouse_genomes_project 13 19698437 19698981 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0012892.1 MGP_AJ_G0010987.1 mouse_genomes_project 13 19392783 19396748 + processed_pseudogene processed_pseudogene MGP_AJ_T0012963.1 MGP_AJ_G0011058.1 mouse_genomes_project 13 98961065 98962049 - processed_pseudogene processed_pseudogene MGP_AJ_T0036469.1 MGP_AJ_G0020319.1 mouse_genomes_project 13 20893230 20915393 + MGP_AJ_P0036469 Slc17a3 protein_coding protein_coding MGP_AJ_T0006528.1 MGP_AJ_G0005413.1 mouse_genomes_project 13 21698461 21705111 - C530050E15Rik lincRNA lincRNA MGP_AJ_T0037751.1 MGP_AJ_G0020771.1 mouse_genomes_project 13 90330153 90374909 - MGP_AJ_P0037751 Zfyve16 protein_coding protein_coding MGP_AJ_T0037752.1 MGP_AJ_G0020771.1 mouse_genomes_project 13 90330894 90361157 - Zfyve16 protein_coding retained_intron MGP_AJ_T0037753.1 MGP_AJ_G0020771.1 mouse_genomes_project 13 90352195 90353666 - Zfyve16 protein_coding retained_intron MGP_AJ_T0037754.1 MGP_AJ_G0020771.1 mouse_genomes_project 13 90357852 90365723 - Zfyve16 protein_coding processed_transcript MGP_AJ_T0036202.1 MGP_AJ_G0020181.1 mouse_genomes_project 13 6318940 6407981 - MGP_AJ_P0036202 Zmynd11 protein_coding protein_coding MGP_AJ_T0036203.1 MGP_AJ_G0020181.1 mouse_genomes_project 13 6318940 6407095 - MGP_AJ_P0036203 Zmynd11 protein_coding protein_coding MGP_AJ_T0036204.1 MGP_AJ_G0020181.1 mouse_genomes_project 13 6318940 6407160 - MGP_AJ_P0036204 Zmynd11 protein_coding protein_coding MGP_AJ_T0036205.1 MGP_AJ_G0020181.1 mouse_genomes_project 13 6318942 6407827 - MGP_AJ_P0036205 Zmynd11 protein_coding protein_coding MGP_AJ_T0036206.1 MGP_AJ_G0020181.1 mouse_genomes_project 13 6318945 6326784 - Zmynd11 protein_coding retained_intron MGP_AJ_T0036207.1 MGP_AJ_G0020181.1 mouse_genomes_project 13 6318945 6407142 - MGP_AJ_P0036207 Zmynd11 protein_coding protein_coding MGP_AJ_T0036208.1 MGP_AJ_G0020181.1 mouse_genomes_project 13 6319199 6407623 - MGP_AJ_P0036208 Zmynd11 protein_coding protein_coding MGP_AJ_T0036209.1 MGP_AJ_G0020181.1 mouse_genomes_project 13 6322372 6357020 - MGP_AJ_P0036209 Zmynd11 protein_coding protein_coding MGP_AJ_T0036210.1 MGP_AJ_G0020181.1 mouse_genomes_project 13 6324649 6326021 - Zmynd11 protein_coding retained_intron MGP_AJ_T0036211.1 MGP_AJ_G0020181.1 mouse_genomes_project 13 6328985 6331650 - Zmynd11 protein_coding retained_intron MGP_AJ_T0036212.1 MGP_AJ_G0020181.1 mouse_genomes_project 13 6329797 6407937 - MGP_AJ_P0036212 Zmynd11 protein_coding protein_coding MGP_AJ_T0036213.1 MGP_AJ_G0020181.1 mouse_genomes_project 13 6330643 6407116 - MGP_AJ_P0036213 Zmynd11 protein_coding protein_coding MGP_AJ_T0036214.1 MGP_AJ_G0020181.1 mouse_genomes_project 13 6333154 6407604 - MGP_AJ_P0036214 Zmynd11 protein_coding protein_coding MGP_AJ_T0036215.1 MGP_AJ_G0020181.1 mouse_genomes_project 13 6333154 6407988 - MGP_AJ_P0036215 Zmynd11 protein_coding protein_coding MGP_AJ_T0036216.1 MGP_AJ_G0020181.1 mouse_genomes_project 13 6333173 6374843 - Zmynd11 protein_coding processed_transcript MGP_AJ_T0036217.1 MGP_AJ_G0020181.1 mouse_genomes_project 13 6333210 6374485 - Zmynd11 protein_coding processed_transcript MGP_AJ_T0036218.1 MGP_AJ_G0020181.1 mouse_genomes_project 13 6333213 6407090 - MGP_AJ_P0036218 Zmynd11 protein_coding protein_coding MGP_AJ_T0036219.1 MGP_AJ_G0020181.1 mouse_genomes_project 13 6334168 6374951 - MGP_AJ_P0036219 Zmynd11 protein_coding protein_coding MGP_AJ_T0036220.1 MGP_AJ_G0020181.1 mouse_genomes_project 13 6346266 6407126 - MGP_AJ_P0036220 Zmynd11 protein_coding protein_coding MGP_AJ_T0102306.1 MGP_AJ_G0040048.1 mouse_genomes_project 13 20081160 20081638 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0036993.1 MGP_AJ_G0020521.1 mouse_genomes_project 13 51801255 51813603 + MGP_AJ_P0036993 Cplx2 protein_coding protein_coding MGP_AJ_T0012952.1 MGP_AJ_G0011047.1 mouse_genomes_project 13 77979623 77980782 - processed_pseudogene processed_pseudogene MGP_AJ_T0100719.1 MGP_AJ_G0038685.1 mouse_genomes_project 13 21374892 21375015 - Gm23340 snoRNA snoRNA MGP_AJ_T0037954.1 MGP_AJ_G0020843.1 mouse_genomes_project 13 98638314 98676313 - MGP_AJ_P0037954 Cdk7 protein_coding protein_coding MGP_AJ_T0036434.1 MGP_AJ_G0020297.1 mouse_genomes_project 13 20365656 20382970 - MGP_AJ_P0036434 Zfp322a protein_coding protein_coding MGP_AJ_T0036435.1 MGP_AJ_G0020297.1 mouse_genomes_project 13 20370792 20382762 - MGP_AJ_P0036435 Zfp322a protein_coding protein_coding MGP_AJ_T0036436.1 MGP_AJ_G0020297.1 mouse_genomes_project 13 20370793 20382963 - MGP_AJ_P0036436 Zfp322a protein_coding protein_coding MGP_AJ_T0036437.1 MGP_AJ_G0020297.1 mouse_genomes_project 13 20370954 20382956 - MGP_AJ_P0036437 Zfp322a protein_coding protein_coding MGP_AJ_T0037447.1 MGP_AJ_G0020675.1 mouse_genomes_project 13 65456508 65473893 - MGP_AJ_P0037447 Zfp65 protein_coding unknown_likely_coding MGP_AJ_T0037448.1 MGP_AJ_G0020675.1 mouse_genomes_project 13 65456511 65473942 - MGP_AJ_P0037448 Zfp65 protein_coding protein_coding MGP_AJ_T0036465.1 MGP_AJ_G0020318.1 mouse_genomes_project 13 20861102 20877516 + Slc17a2 protein_coding retained_intron MGP_AJ_T0036466.1 MGP_AJ_G0020318.1 mouse_genomes_project 13 20861136 20879291 + MGP_AJ_P0036466 Slc17a2 protein_coding protein_coding MGP_AJ_T0036467.1 MGP_AJ_G0020318.1 mouse_genomes_project 13 20861154 20877287 + Slc17a2 protein_coding retained_intron MGP_AJ_T0036468.1 MGP_AJ_G0020318.1 mouse_genomes_project 13 20861157 20876868 + MGP_AJ_P0036468 Slc17a2 protein_coding protein_coding MGP_AJ_T0038186.1 MGP_AJ_G0020914.1 mouse_genomes_project 13 115233319 115282725 + MGP_AJ_P0038186 Emb protein_coding protein_coding MGP_AJ_T0000883.1 MGP_AJ_G0000817.1 mouse_genomes_project 13 66800671 66802236 + TEC TEC MGP_AJ_T0009926.1 MGP_AJ_G0008048.1 mouse_genomes_project 13 28757972 28758070 - Gm27516 miRNA miRNA MGP_AJ_T0037418.1 MGP_AJ_G0020657.1 mouse_genomes_project 13 64978141 64978923 - protein_coding retained_intron MGP_AJ_T0038023.1 MGP_AJ_G0020858.1 mouse_genomes_project 13 102183672 102201778 + MGP_AJ_P0038023 Cenpk protein_coding protein_coding MGP_AJ_T0038024.1 MGP_AJ_G0020858.1 mouse_genomes_project 13 102184105 102204262 + MGP_AJ_P0038024 Cenpk protein_coding protein_coding MGP_AJ_T0036281.1 MGP_AJ_G0020205.1 mouse_genomes_project 13 12353224 12607346 + MGP_AJ_P0036281 Gli3 protein_coding protein_coding MGP_AJ_T0036282.1 MGP_AJ_G0020205.1 mouse_genomes_project 13 12353240 12532585 + Gli3 protein_coding processed_transcript MGP_AJ_T0036283.1 MGP_AJ_G0020205.1 mouse_genomes_project 13 12353712 12555142 + Gli3 protein_coding retained_intron MGP_AJ_T0036284.1 MGP_AJ_G0020205.1 mouse_genomes_project 13 12353969 12622354 + MGP_AJ_P0036284 Gli3 protein_coding protein_coding MGP_AJ_T0037827.1 MGP_AJ_G0020801.1 mouse_genomes_project 13 93923338 93924180 + Gm17190 protein_coding translated_processed_pseudogene MGP_AJ_T0037828.1 MGP_AJ_G0020801.1 mouse_genomes_project 13 93923442 93924508 + MGP_AJ_P0037828 Gm17190 protein_coding protein_coding MGP_AJ_T0036766.1 MGP_AJ_G0020444.1 mouse_genomes_project 13 38770963 38806237 + MGP_AJ_P0036766 Tmem170b protein_coding protein_coding MGP_AJ_T0100742.1 MGP_AJ_G0038708.1 mouse_genomes_project 13 75545321 75545452 + Gm26088 snoRNA snoRNA MGP_AJ_T0037532.1 MGP_AJ_G0020715.1 mouse_genomes_project 13 71948330 71993969 + MGP_AJ_P0037532 Slc9a3 protein_coding unknown_likely_coding MGP_AJ_T0037533.1 MGP_AJ_G0020715.1 mouse_genomes_project 13 71948330 71992870 + MGP_AJ_P0037533 Slc9a3 protein_coding protein_coding MGP_AJ_T0037240.1 MGP_AJ_G0020589.1 mouse_genomes_project 13 56031146 56044359 - MGP_AJ_P0037240 Slc28a3 protein_coding nonsense_mediated_decay MGP_AJ_T0037241.1 MGP_AJ_G0020589.1 mouse_genomes_project 13 56039404 56098832 - MGP_AJ_P0037241 Slc28a3 protein_coding protein_coding MGP_AJ_T0037242.1 MGP_AJ_G0020589.1 mouse_genomes_project 13 56068682 56098832 - MGP_AJ_P0037242 Slc28a3 protein_coding nonsense_mediated_decay MGP_AJ_T0037243.1 MGP_AJ_G0020589.1 mouse_genomes_project 13 56073675 56098824 - Slc28a3 protein_coding retained_intron MGP_AJ_T0036470.1 MGP_AJ_G0020320.1 mouse_genomes_project 13 20922466 20929563 + MGP_AJ_P0036470 Slc17a1 protein_coding protein_coding MGP_AJ_T0036471.1 MGP_AJ_G0020320.1 mouse_genomes_project 13 20922723 20949396 + MGP_AJ_P0036471 Slc17a1 protein_coding protein_coding MGP_AJ_T0036472.1 MGP_AJ_G0020320.1 mouse_genomes_project 13 20925011 20931376 + Slc17a1 protein_coding processed_transcript MGP_AJ_T0037978.1 MGP_AJ_G0020849.1 mouse_genomes_project 13 100661553 100674956 + MGP_AJ_P0037978 Cd180 protein_coding protein_coding MGP_AJ_T0037979.1 MGP_AJ_G0020849.1 mouse_genomes_project 13 100661560 100672262 + MGP_AJ_P0037979 Cd180 protein_coding protein_coding MGP_AJ_T0037980.1 MGP_AJ_G0020849.1 mouse_genomes_project 13 100661568 100673067 + MGP_AJ_P0037980 Cd180 protein_coding protein_coding MGP_AJ_T0037981.1 MGP_AJ_G0020849.1 mouse_genomes_project 13 100661574 100707650 + MGP_AJ_P0037981 Cd180 protein_coding protein_coding MGP_AJ_T0037982.1 MGP_AJ_G0020849.1 mouse_genomes_project 13 100661606 100707525 + MGP_AJ_P0037982 Cd180 protein_coding protein_coding MGP_AJ_T0037149.1 MGP_AJ_G0020556.1 mouse_genomes_project 13 52985237 52991419 - MGP_AJ_P0037149 Ddx41 protein_coding protein_coding MGP_AJ_T0037383.1 MGP_AJ_G0020640.1 mouse_genomes_project 13 62790725 62791673 + MGP_AJ_P0037383 Olfr465-ps1 protein_coding protein_coding MGP_AJ_T0037406.1 MGP_AJ_G0020651.1 mouse_genomes_project 13 64722085 64748452 - protein_coding processed_transcript MGP_AJ_T0037407.1 MGP_AJ_G0020651.1 mouse_genomes_project 13 64722085 64759069 - MGP_AJ_P0037407 protein_coding nonsense_mediated_decay MGP_AJ_T0037408.1 MGP_AJ_G0020651.1 mouse_genomes_project 13 64722086 64748537 - MGP_AJ_P0037408 protein_coding protein_coding MGP_AJ_T0037410.1 MGP_AJ_G0020651.1 mouse_genomes_project 13 64726624 64748537 - protein_coding processed_transcript MGP_AJ_T0037412.1 MGP_AJ_G0020651.1 mouse_genomes_project 13 64755928 64759124 - protein_coding processed_transcript MGP_AJ_T0036441.1 MGP_AJ_G0020300.1 mouse_genomes_project 13 20514567 20525916 - MGP_AJ_P0036441 Btn2a2 protein_coding protein_coding MGP_AJ_T0036442.1 MGP_AJ_G0020300.1 mouse_genomes_project 13 20514567 20525933 - MGP_AJ_P0036442 Btn2a2 protein_coding protein_coding MGP_AJ_T0036443.1 MGP_AJ_G0020300.1 mouse_genomes_project 13 20514779 20525923 - MGP_AJ_P0036443 Btn2a2 protein_coding protein_coding MGP_AJ_T0036448.1 MGP_AJ_G0020305.1 mouse_genomes_project 13 20628794 20629500 + MGP_AJ_P0036448 Hist1h4d protein_coding protein_coding MGP_AJ_T0012935.1 MGP_AJ_G0011030.1 mouse_genomes_project 13 61617451 61618666 - processed_pseudogene processed_pseudogene MGP_AJ_T0003445.1 MGP_AJ_G0003156.1 mouse_genomes_project 13 37881708 37889040 + Gm26688 antisense antisense MGP_AJ_T0037694.1 MGP_AJ_G0020755.1 mouse_genomes_project 13 87581390 87903321 - MGP_AJ_P0037694 Xrcc4 protein_coding nonsense_mediated_decay MGP_AJ_T0037695.1 MGP_AJ_G0020755.1 mouse_genomes_project 13 87664505 87903406 - MGP_AJ_P0037695 Xrcc4 protein_coding protein_coding MGP_AJ_T0037696.1 MGP_AJ_G0020755.1 mouse_genomes_project 13 87876116 87903334 - MGP_AJ_P0037696 Xrcc4 protein_coding protein_coding MGP_AJ_T0037697.1 MGP_AJ_G0020755.1 mouse_genomes_project 13 87876151 87902880 - MGP_AJ_P0037697 Xrcc4 protein_coding protein_coding MGP_AJ_T0037019.1 MGP_AJ_G0020527.1 mouse_genomes_project 13 52015212 52016164 + MGP_AJ_P0037019 Higd2a protein_coding protein_coding MGP_AJ_T0036402.1 MGP_AJ_G0020265.1 mouse_genomes_project 13 18909518 18910475 - MGP_AJ_P0036402 Hist1h2ah protein_coding protein_coding MGP_AJ_T0102298.1 MGP_AJ_G0040040.1 mouse_genomes_project 13 19838110 19838402 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0102322.1 MGP_AJ_G0040064.1 mouse_genomes_project 13 30923918 30927698 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0037012.1 MGP_AJ_G0020525.1 mouse_genomes_project 13 52000020 52006138 + MGP_AJ_P0037012 Arl10 protein_coding protein_coding MGP_AJ_T0037013.1 MGP_AJ_G0020525.1 mouse_genomes_project 13 52000052 52004026 + MGP_AJ_P0037013 Arl10 protein_coding protein_coding MGP_AJ_T0037014.1 MGP_AJ_G0020525.1 mouse_genomes_project 13 52003390 52003919 + Arl10 protein_coding processed_transcript MGP_AJ_T0037015.1 MGP_AJ_G0020525.1 mouse_genomes_project 13 52003821 52004547 + MGP_AJ_P0037015 Arl10 protein_coding protein_coding MGP_AJ_T0012962.1 MGP_AJ_G0011057.1 mouse_genomes_project 13 98716462 98716771 + processed_pseudogene processed_pseudogene MGP_AJ_T0037790.1 MGP_AJ_G0020786.1 mouse_genomes_project 13 92181217 92184193 - MGP_AJ_P0037790 Gm9776 protein_coding protein_coding MGP_AJ_T0006603.1 MGP_AJ_G0005464.1 mouse_genomes_project 13 67597686 67603835 - Gm26819 lincRNA lincRNA MGP_AJ_T0038121.1 MGP_AJ_G0020885.1 mouse_genomes_project 13 110253408 110348489 + MGP_AJ_P0038121 Ankrd55 protein_coding protein_coding MGP_AJ_T0038122.1 MGP_AJ_G0020885.1 mouse_genomes_project 13 110253408 110348489 + MGP_AJ_P0038122 Ankrd55 protein_coding protein_coding MGP_AJ_T0038123.1 MGP_AJ_G0020885.1 mouse_genomes_project 13 110253408 110309813 + MGP_AJ_P0038123 Ankrd55 protein_coding protein_coding MGP_AJ_T0038124.1 MGP_AJ_G0020885.1 mouse_genomes_project 13 110253475 110321378 + MGP_AJ_P0038124 Ankrd55 protein_coding protein_coding MGP_AJ_T0037893.1 MGP_AJ_G0020824.1 mouse_genomes_project 13 96632495 96725425 - MGP_AJ_P0037893 Fcho2 protein_coding protein_coding MGP_AJ_T0037894.1 MGP_AJ_G0020824.1 mouse_genomes_project 13 96632495 96725425 - MGP_AJ_P0037894 Fcho2 protein_coding protein_coding MGP_AJ_T0037895.1 MGP_AJ_G0020824.1 mouse_genomes_project 13 96660266 96725425 - MGP_AJ_P0037895 Fcho2 protein_coding protein_coding MGP_AJ_T0037896.1 MGP_AJ_G0020824.1 mouse_genomes_project 13 96662220 96725425 - MGP_AJ_P0037896 Fcho2 protein_coding protein_coding MGP_AJ_T0036909.1 MGP_AJ_G0020494.1 mouse_genomes_project 13 46874455 46890884 + MGP_AJ_P0036909 Ogn protein_coding protein_coding MGP_AJ_T0037603.1 MGP_AJ_G0020742.1 mouse_genomes_project 13 78988068 79237877 - MGP_AJ_P0037603 protein_coding protein_coding MGP_AJ_T0037604.1 MGP_AJ_G0020742.1 mouse_genomes_project 13 78988068 79524680 - MGP_AJ_P0037604 protein_coding protein_coding MGP_AJ_T0037605.1 MGP_AJ_G0020742.1 mouse_genomes_project 13 78988069 79341149 - MGP_AJ_P0037605 protein_coding nonsense_mediated_decay MGP_AJ_T0037606.1 MGP_AJ_G0020742.1 mouse_genomes_project 13 78999930 79237398 - protein_coding processed_transcript MGP_AJ_T0037607.1 MGP_AJ_G0020742.1 mouse_genomes_project 13 79341175 79484832 - MGP_AJ_P0037607 protein_coding unknown_likely_coding MGP_AJ_T0037608.1 MGP_AJ_G0020742.1 mouse_genomes_project 13 79341175 79524554 - MGP_AJ_P0037608 protein_coding unknown_likely_coding MGP_AJ_T0037609.1 MGP_AJ_G0020742.1 mouse_genomes_project 13 79396877 79466144 - MGP_AJ_P0037609 protein_coding protein_coding MGP_AJ_T0037610.1 MGP_AJ_G0020742.1 mouse_genomes_project 13 79396878 79480360 - protein_coding retained_intron MGP_AJ_T0037611.1 MGP_AJ_G0020742.1 mouse_genomes_project 13 79396878 79425018 - protein_coding retained_intron MGP_AJ_T0037612.1 MGP_AJ_G0020742.1 mouse_genomes_project 13 79433148 79436241 - protein_coding retained_intron MGP_AJ_T0037613.1 MGP_AJ_G0020742.1 mouse_genomes_project 13 79452304 79454620 - protein_coding retained_intron MGP_AJ_T0037614.1 MGP_AJ_G0020742.1 mouse_genomes_project 13 79456079 79524665 - MGP_AJ_P0037614 protein_coding protein_coding MGP_AJ_T0037615.1 MGP_AJ_G0020742.1 mouse_genomes_project 13 79472929 79524665 - MGP_AJ_P0037615 protein_coding protein_coding MGP_AJ_T0037616.1 MGP_AJ_G0020742.1 mouse_genomes_project 13 79474544 79524667 - MGP_AJ_P0037616 protein_coding protein_coding MGP_AJ_T0037617.1 MGP_AJ_G0020742.1 mouse_genomes_project 13 79476844 79479585 - protein_coding retained_intron MGP_AJ_T0036570.1 MGP_AJ_G0020359.1 mouse_genomes_project 13 24953429 24976067 + MGP_AJ_P0036570 protein_coding protein_coding MGP_AJ_T0036523.1 MGP_AJ_G0020333.1 mouse_genomes_project 13 21995403 22025567 - MGP_AJ_P0036523 Aldh5a1 protein_coding protein_coding MGP_AJ_T0003428.1 MGP_AJ_G0003143.1 mouse_genomes_project 13 16052243 16086461 - Gm43385 antisense antisense MGP_AJ_T0003467.1 MGP_AJ_G0003171.1 mouse_genomes_project 13 65032517 65049990 + antisense antisense MGP_AJ_T0099449.1 MGP_AJ_G0037415.1 mouse_genomes_project 13 24970288 24970388 + Gm22476 snRNA snRNA MGP_AJ_T0037655.1 MGP_AJ_G0020748.1 mouse_genomes_project 13 82126703 82200936 + MGP_AJ_P0037655 Tmem161b protein_coding protein_coding MGP_AJ_T0011345.1 MGP_AJ_G0009467.1 mouse_genomes_project 13 9305499 9305797 + Gm23081 misc_RNA misc_RNA MGP_AJ_T0036413.1 MGP_AJ_G0020276.1 mouse_genomes_project 13 19277267 19278170 + MGP_AJ_P0036413 Vmn1r198 protein_coding protein_coding MGP_AJ_T0037442.1 MGP_AJ_G0020672.1 mouse_genomes_project 13 65293320 65329894 - MGP_AJ_P0037442 Zfp729b protein_coding unknown_likely_coding MGP_AJ_T0037443.1 MGP_AJ_G0020672.1 mouse_genomes_project 13 65293326 65303741 - MGP_AJ_P0037443 Zfp729b protein_coding protein_coding MGP_AJ_T0011358.1 MGP_AJ_G0009480.1 mouse_genomes_project 13 54176731 54176901 + Gm27271 misc_RNA misc_RNA MGP_AJ_T0036636.1 MGP_AJ_G0020395.1 mouse_genomes_project 13 30864144 30875572 + MGP_AJ_P0036636 Serpinb6d protein_coding protein_coding MGP_AJ_T0036412.1 MGP_AJ_G0020275.1 mouse_genomes_project 13 19251944 19252841 + MGP_AJ_P0036412 Vmn1r197 protein_coding protein_coding MGP_AJ_T0100714.1 MGP_AJ_G0038680.1 mouse_genomes_project 13 7996532 7996652 - Gm25496 snoRNA snoRNA MGP_AJ_T0037522.1 MGP_AJ_G0020709.1 mouse_genomes_project 13 71736027 71763505 - MGP_AJ_P0037522 Trip13 protein_coding protein_coding MGP_AJ_T0036574.1 MGP_AJ_G0020363.1 mouse_genomes_project 13 25320394 25330417 + MGP_AJ_P0036574 Prl5a1 protein_coding protein_coding MGP_AJ_T0009954.1 MGP_AJ_G0008076.1 mouse_genomes_project 13 85268545 85268655 + Gm24935 miRNA miRNA MGP_AJ_T0036133.1 MGP_AJ_G0020162.1 mouse_genomes_project 13 849500 868382 - MGP_AJ_P0036133 Akr1c12 protein_coding protein_coding MGP_AJ_T0012926.1 MGP_AJ_G0011021.1 mouse_genomes_project 13 32082895 32083881 + processed_pseudogene processed_pseudogene MGP_AJ_T0036935.1 MGP_AJ_G0020500.1 mouse_genomes_project 13 47853466 47861515 + MGP_AJ_P0036935 Nutm2 protein_coding protein_coding MGP_AJ_T0102288.1 MGP_AJ_G0040030.1 mouse_genomes_project 13 19379011 19379782 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0037341.1 MGP_AJ_G0020624.1 mouse_genomes_project 13 61166541 61224133 - MGP_AJ_P0037341 Ptch1 protein_coding protein_coding MGP_AJ_T0037342.1 MGP_AJ_G0020624.1 mouse_genomes_project 13 61166542 61232119 - MGP_AJ_P0037342 Ptch1 protein_coding nonsense_mediated_decay MGP_AJ_T0037343.1 MGP_AJ_G0020624.1 mouse_genomes_project 13 61172026 61172757 - Ptch1 protein_coding retained_intron MGP_AJ_T0037344.1 MGP_AJ_G0020624.1 mouse_genomes_project 13 61176479 61222394 - MGP_AJ_P0037344 Ptch1 protein_coding nonsense_mediated_decay MGP_AJ_T0037345.1 MGP_AJ_G0020624.1 mouse_genomes_project 13 61201664 61223853 - MGP_AJ_P0037345 Ptch1 protein_coding protein_coding MGP_AJ_T0037346.1 MGP_AJ_G0020624.1 mouse_genomes_project 13 61201664 61222905 - MGP_AJ_P0037346 Ptch1 protein_coding protein_coding MGP_AJ_T0037347.1 MGP_AJ_G0020624.1 mouse_genomes_project 13 61201664 61232257 - MGP_AJ_P0037347 Ptch1 protein_coding protein_coding MGP_AJ_T0036130.1 MGP_AJ_G0020161.1 mouse_genomes_project 13 812168 831819 + MGP_AJ_P0036130 Akr1c19 protein_coding protein_coding MGP_AJ_T0036131.1 MGP_AJ_G0020161.1 mouse_genomes_project 13 817211 831818 + MGP_AJ_P0036131 Akr1c19 protein_coding protein_coding MGP_AJ_T0036132.1 MGP_AJ_G0020161.1 mouse_genomes_project 13 828786 832140 + Akr1c19 protein_coding processed_transcript MGP_AJ_T0036109.1 MGP_AJ_G0020151.1 mouse_genomes_project 13 225941 248856 + MGP_AJ_P0036109 Asb13 protein_coding protein_coding MGP_AJ_T0036110.1 MGP_AJ_G0020151.1 mouse_genomes_project 13 225998 226692 + Asb13 protein_coding processed_transcript MGP_AJ_T0036111.1 MGP_AJ_G0020151.1 mouse_genomes_project 13 226007 247577 + Asb13 protein_coding processed_transcript MGP_AJ_T0036112.1 MGP_AJ_G0020151.1 mouse_genomes_project 13 226008 234753 + Asb13 protein_coding retained_intron MGP_AJ_T0037316.1 MGP_AJ_G0020619.1 mouse_genomes_project 13 60435900 60441017 - MGP_AJ_P0037316 Gm5141 protein_coding protein_coding MGP_AJ_T0012960.1 MGP_AJ_G0011055.1 mouse_genomes_project 13 91554345 91554681 - processed_pseudogene processed_pseudogene MGP_AJ_T0099455.1 MGP_AJ_G0037421.1 mouse_genomes_project 13 38741730 38741896 - Gm24819 snRNA snRNA MGP_AJ_T0003471.1 MGP_AJ_G0003173.1 mouse_genomes_project 13 67315813 67316775 - A530095I07Rik antisense antisense MGP_AJ_T0036365.1 MGP_AJ_G0020242.1 mouse_genomes_project 13 18496575 18500250 - MGP_AJ_P0036365 Olfr11 protein_coding protein_coding MGP_AJ_T0036366.1 MGP_AJ_G0020242.1 mouse_genomes_project 13 18496575 18497517 - MGP_AJ_P0036366 Olfr11 protein_coding protein_coding MGP_AJ_T0012921.1 MGP_AJ_G0011016.1 mouse_genomes_project 13 29018266 29020421 + processed_pseudogene processed_pseudogene MGP_AJ_T0012928.1 MGP_AJ_G0011023.1 mouse_genomes_project 13 41611250 41612230 - processed_pseudogene processed_pseudogene MGP_AJ_T0038212.1 MGP_AJ_G0020926.1 mouse_genomes_project 13 117758197 117778506 + MGP_AJ_P0038212 Hmgcs1 protein_coding unknown_likely_coding MGP_AJ_T0037757.1 MGP_AJ_G0020774.1 mouse_genomes_project 13 90584074 90627523 - MGP_AJ_P0037757 Thbs4 protein_coding protein_coding MGP_AJ_T0037758.1 MGP_AJ_G0020774.1 mouse_genomes_project 13 90605260 90607074 - Thbs4 protein_coding retained_intron MGP_AJ_T0006642.1 MGP_AJ_G0005492.1 mouse_genomes_project 13 105631007 105635784 + 1700006H21Rik lincRNA lincRNA MGP_AJ_T0006643.1 MGP_AJ_G0005492.1 mouse_genomes_project 13 105631007 105635795 + 1700006H21Rik lincRNA lincRNA MGP_AJ_T0036632.1 MGP_AJ_G0020391.1 mouse_genomes_project 13 30429570 30441702 + MGP_AJ_P0036632 Serpinb9e protein_coding protein_coding MGP_AJ_T0037818.1 MGP_AJ_G0020794.1 mouse_genomes_project 13 93261029 93279961 - MGP_AJ_P0037818 Crhbp protein_coding protein_coding MGP_AJ_T0036344.1 MGP_AJ_G0020231.1 mouse_genomes_project 13 18276287 18295776 - MGP_AJ_P0036344 protein_coding protein_coding MGP_AJ_T0036345.1 MGP_AJ_G0020231.1 mouse_genomes_project 13 18276290 18295585 - MGP_AJ_P0036345 protein_coding protein_coding MGP_AJ_T0036346.1 MGP_AJ_G0020231.1 mouse_genomes_project 13 18276862 18295919 - MGP_AJ_P0036346 protein_coding protein_coding MGP_AJ_T0036347.1 MGP_AJ_G0020231.1 mouse_genomes_project 13 18276862 18295933 - MGP_AJ_P0036347 protein_coding protein_coding MGP_AJ_T0036348.1 MGP_AJ_G0020231.1 mouse_genomes_project 13 18278204 18295585 - MGP_AJ_P0036348 protein_coding protein_coding MGP_AJ_T0037457.1 MGP_AJ_G0020680.1 mouse_genomes_project 13 65577844 65591741 + MGP_AJ_P0037457 Zfp273 protein_coding protein_coding MGP_AJ_T0037458.1 MGP_AJ_G0020680.1 mouse_genomes_project 13 65577885 65579368 + Zfp273 protein_coding retained_intron MGP_AJ_T0037459.1 MGP_AJ_G0020680.1 mouse_genomes_project 13 65577964 65591741 + MGP_AJ_P0037459 Zfp273 protein_coding protein_coding MGP_AJ_T0037566.1 MGP_AJ_G0020730.1 mouse_genomes_project 13 73907558 73939973 + MGP_AJ_P0037566 Spata9 protein_coding protein_coding MGP_AJ_T0006596.1 MGP_AJ_G0005459.1 mouse_genomes_project 13 57228001 57229494 + 4930528D03Rik lincRNA lincRNA MGP_AJ_T0006597.1 MGP_AJ_G0005459.1 mouse_genomes_project 13 57228006 57231755 + 4930528D03Rik lincRNA lincRNA MGP_AJ_T0038060.1 MGP_AJ_G0020871.1 mouse_genomes_project 13 105668237 105835515 - MGP_AJ_P0038060 Zswim6 protein_coding protein_coding MGP_AJ_T0036239.1 MGP_AJ_G0020189.1 mouse_genomes_project 13 9153495 9198656 + MGP_AJ_P0036239 Ero1lb protein_coding protein_coding MGP_AJ_T0036240.1 MGP_AJ_G0020189.1 mouse_genomes_project 13 9153689 9211680 + MGP_AJ_P0036240 Ero1lb protein_coding unknown_likely_coding MGP_AJ_T0036709.1 MGP_AJ_G0020420.1 mouse_genomes_project 13 34944371 35062804 + MGP_AJ_P0036709 Rreb1 protein_coding protein_coding MGP_AJ_T0036710.1 MGP_AJ_G0020420.1 mouse_genomes_project 13 34992823 35062781 + MGP_AJ_P0036710 Rreb1 protein_coding protein_coding MGP_AJ_T0036711.1 MGP_AJ_G0020420.1 mouse_genomes_project 13 34992887 35104955 + MGP_AJ_P0036711 Rreb1 protein_coding protein_coding MGP_AJ_T0036712.1 MGP_AJ_G0020420.1 mouse_genomes_project 13 34993163 35121406 + MGP_AJ_P0036712 Rreb1 protein_coding protein_coding MGP_AJ_T0036713.1 MGP_AJ_G0020420.1 mouse_genomes_project 13 34993780 35102109 + MGP_AJ_P0036713 Rreb1 protein_coding protein_coding MGP_AJ_T0036714.1 MGP_AJ_G0020420.1 mouse_genomes_project 13 34993780 35116430 + MGP_AJ_P0036714 Rreb1 protein_coding nonsense_mediated_decay MGP_AJ_T0036715.1 MGP_AJ_G0020420.1 mouse_genomes_project 13 34994241 35102111 + MGP_AJ_P0036715 Rreb1 protein_coding protein_coding MGP_AJ_T0036716.1 MGP_AJ_G0020420.1 mouse_genomes_project 13 35026455 35062869 + MGP_AJ_P0036716 Rreb1 protein_coding protein_coding MGP_AJ_T0036717.1 MGP_AJ_G0020420.1 mouse_genomes_project 13 35057388 35121408 + MGP_AJ_P0036717 Rreb1 protein_coding nonsense_mediated_decay MGP_AJ_T0036718.1 MGP_AJ_G0020420.1 mouse_genomes_project 13 35057825 35121400 + MGP_AJ_P0036718 Rreb1 protein_coding protein_coding MGP_AJ_T0036719.1 MGP_AJ_G0020420.1 mouse_genomes_project 13 35116421 35118612 + MGP_AJ_P0036719 Rreb1 protein_coding protein_coding MGP_AJ_T0037562.1 MGP_AJ_G0020728.1 mouse_genomes_project 13 73771606 73782020 + MGP_AJ_P0037562 Glrx protein_coding protein_coding MGP_AJ_T0037932.1 MGP_AJ_G0020837.1 mouse_genomes_project 13 98400568 98432479 - MGP_AJ_P0037932 Gtf2h2 protein_coding nonsense_mediated_decay MGP_AJ_T0037933.1 MGP_AJ_G0020837.1 mouse_genomes_project 13 98400757 98432695 - MGP_AJ_P0037933 Gtf2h2 protein_coding unknown_likely_coding MGP_AJ_T0037934.1 MGP_AJ_G0020837.1 mouse_genomes_project 13 98408947 98432702 - MGP_AJ_P0037934 Gtf2h2 protein_coding protein_coding MGP_AJ_T0037935.1 MGP_AJ_G0020837.1 mouse_genomes_project 13 98409177 98432508 - Gtf2h2 protein_coding retained_intron MGP_AJ_T0037936.1 MGP_AJ_G0020837.1 mouse_genomes_project 13 98409177 98432720 - MGP_AJ_P0037936 Gtf2h2 protein_coding nonsense_mediated_decay MGP_AJ_T0037937.1 MGP_AJ_G0020837.1 mouse_genomes_project 13 98417246 98420861 - Gtf2h2 protein_coding processed_transcript MGP_AJ_T0037938.1 MGP_AJ_G0020837.1 mouse_genomes_project 13 98419335 98421779 - Gtf2h2 protein_coding processed_transcript MGP_AJ_T0037939.1 MGP_AJ_G0020837.1 mouse_genomes_project 13 98421658 98432720 - MGP_AJ_P0037939 Gtf2h2 protein_coding protein_coding MGP_AJ_T0037940.1 MGP_AJ_G0020837.1 mouse_genomes_project 13 98427831 98432515 - Gtf2h2 protein_coding retained_intron MGP_AJ_T0037941.1 MGP_AJ_G0020837.1 mouse_genomes_project 13 98428923 98432694 - Gtf2h2 protein_coding processed_transcript MGP_AJ_T0012883.1 MGP_AJ_G0010978.1 mouse_genomes_project 13 18147620 18148091 - processed_pseudogene processed_pseudogene MGP_AJ_T0037561.1 MGP_AJ_G0020727.1 mouse_genomes_project 13 73644515 73710637 + MGP_AJ_P0037561 Ell2 protein_coding protein_coding MGP_AJ_T0017339.1 MGP_AJ_G0015219.1 mouse_genomes_project 13 12328399 12352652 - Gm6556 processed_transcript antisense MGP_AJ_T0017340.1 MGP_AJ_G0015219.1 mouse_genomes_project 13 12351798 12353726 - Gm6556 processed_transcript TEC MGP_AJ_T0100743.1 MGP_AJ_G0038709.1 mouse_genomes_project 13 77057194 77057338 + Gm25383 snoRNA snoRNA MGP_AJ_T0036680.1 MGP_AJ_G0020409.1 mouse_genomes_project 13 32067025 32107214 + MGP_AJ_P0036680 4933417A18Rik protein_coding nonsense_mediated_decay MGP_AJ_T0036681.1 MGP_AJ_G0020409.1 mouse_genomes_project 13 32067025 32104536 + MGP_AJ_P0036681 4933417A18Rik protein_coding protein_coding MGP_AJ_T0037411.1 MGP_AJ_G0020653.1 mouse_genomes_project 13 64747171 64764542 - MGP_AJ_P0037411 Rslcan18 protein_coding protein_coding MGP_AJ_T0037413.1 MGP_AJ_G0020653.1 mouse_genomes_project 13 64761534 64766770 - Rslcan18 protein_coding retained_intron MGP_AJ_T0098575.1 MGP_AJ_G0036559.1 mouse_genomes_project 13 43719579 43719657 + Gm24915 rRNA rRNA MGP_AJ_T0012970.1 MGP_AJ_G0011065.1 mouse_genomes_project 13 111105191 111105450 + processed_pseudogene processed_pseudogene MGP_AJ_T0036558.1 MGP_AJ_G0020352.1 mouse_genomes_project 13 24639478 24647673 - MGP_AJ_P0036558 Prl8a1 protein_coding protein_coding MGP_AJ_T0036559.1 MGP_AJ_G0020352.1 mouse_genomes_project 13 24639988 24647673 - MGP_AJ_P0036559 Prl8a1 protein_coding protein_coding MGP_AJ_T0036124.1 MGP_AJ_G0020159.1 mouse_genomes_project 13 709707 727544 - MGP_AJ_P0036124 Akr1c18 protein_coding protein_coding MGP_AJ_T0036125.1 MGP_AJ_G0020159.1 mouse_genomes_project 13 709707 727570 - MGP_AJ_P0036125 Akr1c18 protein_coding protein_coding MGP_AJ_T0036285.1 MGP_AJ_G0020206.1 mouse_genomes_project 13 12894953 12913768 + MGP_AJ_P0036285 Inhba protein_coding protein_coding MGP_AJ_T0036286.1 MGP_AJ_G0020206.1 mouse_genomes_project 13 12897577 12913791 + MGP_AJ_P0036286 Inhba protein_coding protein_coding MGP_AJ_T0038213.1 MGP_AJ_G0020927.1 mouse_genomes_project 13 117780503 117830478 - MGP_AJ_P0038213 Nim1k protein_coding protein_coding MGP_AJ_T0038214.1 MGP_AJ_G0020927.1 mouse_genomes_project 13 117793885 117808983 - MGP_AJ_P0038214 Nim1k protein_coding protein_coding MGP_AJ_T0036604.1 MGP_AJ_G0020375.1 mouse_genomes_project 13 28690652 28693852 - MGP_AJ_P0036604 A530084C06Rik protein_coding protein_coding MGP_AJ_T0006640.1 MGP_AJ_G0005490.1 mouse_genomes_project 13 99340728 99406437 + lincRNA lincRNA MGP_AJ_T0102329.1 MGP_AJ_G0040071.1 mouse_genomes_project 13 104156554 104157110 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0036563.1 MGP_AJ_G0020355.1 mouse_genomes_project 13 24728430 24737513 - MGP_AJ_P0036563 Prl7a2 protein_coding protein_coding MGP_AJ_T0036592.1 MGP_AJ_G0020368.1 mouse_genomes_project 13 27480028 27489501 + Agtr1a protein_coding processed_transcript MGP_AJ_T0036593.1 MGP_AJ_G0020368.1 mouse_genomes_project 13 27480028 27524288 + MGP_AJ_P0036593 Agtr1a protein_coding protein_coding MGP_AJ_T0037210.1 MGP_AJ_G0020580.1 mouse_genomes_project 13 55486536 55595700 - MGP_AJ_P0037210 Klhl3 protein_coding protein_coding MGP_AJ_T0037211.1 MGP_AJ_G0020580.1 mouse_genomes_project 13 55487272 55584541 - MGP_AJ_P0037211 Klhl3 protein_coding protein_coding MGP_AJ_T0102311.1 MGP_AJ_G0040053.1 mouse_genomes_project 13 20277465 20278035 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0012964.1 MGP_AJ_G0011059.1 mouse_genomes_project 13 102874467 102874875 + processed_pseudogene processed_pseudogene MGP_AJ_T0037897.1 MGP_AJ_G0020825.1 mouse_genomes_project 13 96752069 96837676 - MGP_AJ_P0037897 Tnpo1 protein_coding protein_coding MGP_AJ_T0037898.1 MGP_AJ_G0020825.1 mouse_genomes_project 13 96759516 96802461 - MGP_AJ_P0037898 Tnpo1 protein_coding protein_coding MGP_AJ_T0037899.1 MGP_AJ_G0020825.1 mouse_genomes_project 13 96786297 96802477 - MGP_AJ_P0037899 Tnpo1 protein_coding protein_coding MGP_AJ_T0036920.1 MGP_AJ_G0020497.1 mouse_genomes_project 13 47166229 47171708 - MGP_AJ_P0036920 Gm8674 protein_coding protein_coding MGP_AJ_T0036114.1 MGP_AJ_G0020153.1 mouse_genomes_project 13 425350 426265 + MGP_AJ_P0036114 protein_coding protein_coding MGP_AJ_T0037589.1 MGP_AJ_G0020737.1 mouse_genomes_project 13 75059619 75488777 + MGP_AJ_P0037589 2210408I21Rik protein_coding protein_coding MGP_AJ_T0036266.1 MGP_AJ_G0020200.1 mouse_genomes_project 13 10956135 11020620 + Arid4b protein_coding processed_transcript MGP_AJ_T0036267.1 MGP_AJ_G0020200.1 mouse_genomes_project 13 10956687 11066404 + MGP_AJ_P0036267 Arid4b protein_coding protein_coding MGP_AJ_T0036268.1 MGP_AJ_G0020200.1 mouse_genomes_project 13 10956688 11095655 + MGP_AJ_P0036268 Arid4b protein_coding protein_coding MGP_AJ_T0036269.1 MGP_AJ_G0020200.1 mouse_genomes_project 13 10956695 11095650 + MGP_AJ_P0036269 Arid4b protein_coding protein_coding MGP_AJ_T0036270.1 MGP_AJ_G0020200.1 mouse_genomes_project 13 10956695 11095891 + MGP_AJ_P0036270 Arid4b protein_coding protein_coding MGP_AJ_T0036271.1 MGP_AJ_G0020200.1 mouse_genomes_project 13 10956702 11062126 + MGP_AJ_P0036271 Arid4b protein_coding protein_coding MGP_AJ_T0036272.1 MGP_AJ_G0020200.1 mouse_genomes_project 13 10956958 11014045 + Arid4b protein_coding processed_transcript MGP_AJ_T0036273.1 MGP_AJ_G0020200.1 mouse_genomes_project 13 11066422 11090013 + MGP_AJ_P0036273 Arid4b protein_coding protein_coding MGP_AJ_T0036274.1 MGP_AJ_G0020200.1 mouse_genomes_project 13 11074366 11087522 + Arid4b protein_coding processed_transcript MGP_AJ_T0036275.1 MGP_AJ_G0020200.1 mouse_genomes_project 13 11087464 11094042 + Arid4b protein_coding processed_transcript MGP_AJ_T0036313.1 MGP_AJ_G0020217.1 mouse_genomes_project 13 16530056 16539681 + MGP_AJ_P0036313 Sfrp4 protein_coding protein_coding MGP_AJ_T0037471.1 MGP_AJ_G0020689.1 mouse_genomes_project 13 67346980 67387338 - MGP_AJ_P0037471 Srd5a1 protein_coding protein_coding MGP_AJ_T0037472.1 MGP_AJ_G0020689.1 mouse_genomes_project 13 67369305 67387244 - Srd5a1 protein_coding processed_transcript MGP_AJ_T0003458.1 MGP_AJ_G0003167.1 mouse_genomes_project 13 55764183 55782145 + Gm26555 antisense antisense MGP_AJ_T0003459.1 MGP_AJ_G0003167.1 mouse_genomes_project 13 55764183 55779588 + Gm26555 antisense antisense MGP_AJ_T0003460.1 MGP_AJ_G0003167.1 mouse_genomes_project 13 55764191 55782146 + Gm26555 antisense antisense MGP_AJ_T0037366.1 MGP_AJ_G0020629.1 mouse_genomes_project 13 61852285 61878284 + MGP_AJ_P0037366 Habp4 protein_coding protein_coding MGP_AJ_T0036544.1 MGP_AJ_G0020344.1 mouse_genomes_project 13 24330475 24337729 + MGP_AJ_P0036544 Prl3b1 protein_coding protein_coding MGP_AJ_T0036475.1 MGP_AJ_G0020322.1 mouse_genomes_project 13 20989255 20990348 - MGP_AJ_P0036475 Hist1h2ba protein_coding protein_coding MGP_AJ_T0099452.1 MGP_AJ_G0037418.1 mouse_genomes_project 13 29921755 29921864 + Gm27342 snRNA snRNA MGP_AJ_T0037450.1 MGP_AJ_G0020676.1 mouse_genomes_project 13 65498078 65505970 - MGP_AJ_P0037450 Zfp85 protein_coding protein_coding MGP_AJ_T0037451.1 MGP_AJ_G0020676.1 mouse_genomes_project 13 65498079 65506060 - MGP_AJ_P0037451 Zfp85 protein_coding protein_coding MGP_AJ_T0036753.1 MGP_AJ_G0020437.1 mouse_genomes_project 13 38182643 38237552 - MGP_AJ_P0036753 Mak protein_coding protein_coding MGP_AJ_T0036754.1 MGP_AJ_G0020437.1 mouse_genomes_project 13 38182643 38228312 - MGP_AJ_P0036754 Mak protein_coding protein_coding MGP_AJ_T0036755.1 MGP_AJ_G0020437.1 mouse_genomes_project 13 38182643 38237552 - MGP_AJ_P0036755 Mak protein_coding protein_coding MGP_AJ_T0036550.1 MGP_AJ_G0020348.1 mouse_genomes_project 13 24448245 24455720 - MGP_AJ_P0036550 Prl2b1 protein_coding protein_coding MGP_AJ_T0036551.1 MGP_AJ_G0020348.1 mouse_genomes_project 13 24448245 24455720 - MGP_AJ_P0036551 Prl2b1 protein_coding protein_coding MGP_AJ_T0012933.1 MGP_AJ_G0011028.1 mouse_genomes_project 13 60441198 60441534 + processed_pseudogene processed_pseudogene MGP_AJ_T0102301.1 MGP_AJ_G0040043.1 mouse_genomes_project 13 19928582 19929543 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0102323.1 MGP_AJ_G0040065.1 mouse_genomes_project 13 30943375 30944174 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0036317.1 MGP_AJ_G0020219.1 mouse_genomes_project 13 16631829 16637358 - MGP_AJ_P0036317 A530099J19Rik protein_coding protein_coding MGP_AJ_T0038141.1 MGP_AJ_G0020891.1 mouse_genomes_project 13 110845579 110908952 - MGP_AJ_P0038141 Skiv2l2 protein_coding protein_coding MGP_AJ_T0006614.1 MGP_AJ_G0005472.1 mouse_genomes_project 13 81615918 81764533 + lincRNA lincRNA MGP_AJ_T0006615.1 MGP_AJ_G0005472.1 mouse_genomes_project 13 81615918 81635879 + lincRNA lincRNA MGP_AJ_T0006617.1 MGP_AJ_G0005472.1 mouse_genomes_project 13 81622686 81630240 + lincRNA lincRNA MGP_AJ_T0006618.1 MGP_AJ_G0005472.1 mouse_genomes_project 13 81627138 81630092 + lincRNA lincRNA MGP_AJ_T0006619.1 MGP_AJ_G0005472.1 mouse_genomes_project 13 81633432 81776044 + lincRNA lincRNA MGP_AJ_T0006636.1 MGP_AJ_G0005486.1 mouse_genomes_project 13 97005187 97012902 + Gm807 lincRNA lincRNA MGP_AJ_T0037777.1 MGP_AJ_G0020781.1 mouse_genomes_project 13 91481676 91499440 - MGP_AJ_P0037777 Bhmt2 protein_coding protein_coding MGP_AJ_T0009940.1 MGP_AJ_G0008062.1 mouse_genomes_project 13 55795932 55796038 - Mir6369 miRNA miRNA MGP_AJ_T0036375.1 MGP_AJ_G0020250.1 mouse_genomes_project 13 18607503 18613066 + MGP_AJ_P0036375 Hist1h2bg protein_coding protein_coding MGP_AJ_T0037016.1 MGP_AJ_G0020526.1 mouse_genomes_project 13 52009192 52015096 - MGP_AJ_P0037016 Nop16 protein_coding protein_coding MGP_AJ_T0037017.1 MGP_AJ_G0020526.1 mouse_genomes_project 13 52009543 52015064 - MGP_AJ_P0037017 Nop16 protein_coding protein_coding MGP_AJ_T0037018.1 MGP_AJ_G0020526.1 mouse_genomes_project 13 52010246 52014982 - MGP_AJ_P0037018 Nop16 protein_coding nonsense_mediated_decay MGP_AJ_T0102098.1 MGP_AJ_G0039868.1 mouse_genomes_project 13 109686901 109689792 - unitary_pseudogene unitary_pseudogene MGP_AJ_T0037905.1 MGP_AJ_G0020830.1 mouse_genomes_project 13 97327191 97423884 - MGP_AJ_P0037905 Map1b protein_coding protein_coding MGP_AJ_T0006616.1 MGP_AJ_G0005473.1 mouse_genomes_project 13 81617977 81624151 - Gm26803 lincRNA lincRNA MGP_AJ_T0003435.1 MGP_AJ_G0003149.1 mouse_genomes_project 13 20848859 20858709 - Gm11337 antisense antisense MGP_AJ_T0036540.1 MGP_AJ_G0020342.1 mouse_genomes_project 13 24187111 24190703 + MGP_AJ_P0036540 protein_coding protein_coding MGP_AJ_T0036873.1 MGP_AJ_G0020482.1 mouse_genomes_project 13 46127646 46219340 - MGP_AJ_P0036873 Fam120a protein_coding protein_coding MGP_AJ_T0037196.1 MGP_AJ_G0020578.1 mouse_genomes_project 13 54238702 54361510 - MGP_AJ_P0037196 Trpc7 protein_coding protein_coding MGP_AJ_T0037197.1 MGP_AJ_G0020578.1 mouse_genomes_project 13 54238702 54361549 - MGP_AJ_P0037197 Trpc7 protein_coding protein_coding MGP_AJ_T0037198.1 MGP_AJ_G0020578.1 mouse_genomes_project 13 54238857 54361562 - MGP_AJ_P0037198 Trpc7 protein_coding nonsense_mediated_decay MGP_AJ_T0037199.1 MGP_AJ_G0020578.1 mouse_genomes_project 13 54239343 54361267 - MGP_AJ_P0037199 Trpc7 protein_coding nonsense_mediated_decay MGP_AJ_T0037200.1 MGP_AJ_G0020578.1 mouse_genomes_project 13 54239343 54361267 - MGP_AJ_P0037200 Trpc7 protein_coding protein_coding MGP_AJ_T0037201.1 MGP_AJ_G0020578.1 mouse_genomes_project 13 54239343 54361267 - MGP_AJ_P0037201 Trpc7 protein_coding nonsense_mediated_decay MGP_AJ_T0037202.1 MGP_AJ_G0020578.1 mouse_genomes_project 13 54239343 54361267 - MGP_AJ_P0037202 Trpc7 protein_coding protein_coding MGP_AJ_T0037203.1 MGP_AJ_G0020578.1 mouse_genomes_project 13 54239343 54361267 - MGP_AJ_P0037203 Trpc7 protein_coding protein_coding MGP_AJ_T0003431.1 MGP_AJ_G0003146.1 mouse_genomes_project 13 18888869 18889749 + Gm11290 antisense antisense MGP_AJ_T0003432.1 MGP_AJ_G0003146.1 mouse_genomes_project 13 18888869 18889771 + Gm11290 antisense antisense MGP_AJ_T0036298.1 MGP_AJ_G0020213.1 mouse_genomes_project 13 15622296 15773545 + MGP_AJ_P0036298 Vps41 protein_coding protein_coding MGP_AJ_T0100730.1 MGP_AJ_G0038696.1 mouse_genomes_project 13 46979962 46980084 + Gm23482 snoRNA snoRNA MGP_AJ_T0006625.1 MGP_AJ_G0005479.1 mouse_genomes_project 13 93975003 93975970 + Gm29543 lincRNA lincRNA MGP_AJ_T0003454.1 MGP_AJ_G0003165.1 mouse_genomes_project 13 53056218 53058821 - Gm15911 antisense antisense MGP_AJ_T0036452.1 MGP_AJ_G0020307.1 mouse_genomes_project 13 20730545 20731021 - MGP_AJ_P0036452 Hist1h2ac protein_coding protein_coding MGP_AJ_T0037901.1 MGP_AJ_G0020827.1 mouse_genomes_project 13 97089403 97153510 + MGP_AJ_P0037901 Zfp366 protein_coding protein_coding MGP_AJ_T0037453.1 MGP_AJ_G0020678.1 mouse_genomes_project 13 65536403 65548475 + MGP_AJ_P0037453 Zfp493 protein_coding protein_coding MGP_AJ_T0037454.1 MGP_AJ_G0020678.1 mouse_genomes_project 13 65536403 65545717 + MGP_AJ_P0037454 Zfp493 protein_coding protein_coding MGP_AJ_T0037455.1 MGP_AJ_G0020678.1 mouse_genomes_project 13 65542595 65546557 + Zfp493 protein_coding retained_intron MGP_AJ_T0006572.1 MGP_AJ_G0005444.1 mouse_genomes_project 13 45196345 45255487 - 4931429P17Rik lincRNA lincRNA MGP_AJ_T0038040.1 MGP_AJ_G0020866.1 mouse_genomes_project 13 103399285 103403726 + MGP_AJ_P0038040 Htr1a protein_coding protein_coding MGP_AJ_T0002497.1 MGP_AJ_G0002403.1 mouse_genomes_project 13 16102263 16102323 + MGP_AJ_P0002497 Trgj1 TR_J_gene TR_J_gene MGP_AJ_T0036702.1 MGP_AJ_G0020415.1 mouse_genomes_project 13 33144944 33286117 - MGP_AJ_P0036702 Lyrm4 protein_coding protein_coding MGP_AJ_T0036744.1 MGP_AJ_G0020434.1 mouse_genomes_project 13 38020494 38120066 + MGP_AJ_P0036744 Gcnt2 protein_coding protein_coding MGP_AJ_T0036745.1 MGP_AJ_G0020434.1 mouse_genomes_project 13 38046443 38120066 + MGP_AJ_P0036745 Gcnt2 protein_coding protein_coding MGP_AJ_T0036746.1 MGP_AJ_G0020434.1 mouse_genomes_project 13 38076985 38120066 + MGP_AJ_P0036746 Gcnt2 protein_coding protein_coding MGP_AJ_T0037120.1 MGP_AJ_G0020549.1 mouse_genomes_project 13 52865215 52865629 - MGP_AJ_P0037120 Pfn3 protein_coding protein_coding MGP_AJ_T0012956.1 MGP_AJ_G0011051.1 mouse_genomes_project 13 85967518 85968314 - processed_pseudogene processed_pseudogene MGP_AJ_T0036816.1 MGP_AJ_G0020459.1 mouse_genomes_project 13 42098917 42181312 - MGP_AJ_P0036816 Dtnbp1 protein_coding protein_coding MGP_AJ_T0036817.1 MGP_AJ_G0020459.1 mouse_genomes_project 13 42098923 42181312 - MGP_AJ_P0036817 Dtnbp1 protein_coding protein_coding MGP_AJ_T0003451.1 MGP_AJ_G0003162.1 mouse_genomes_project 13 47709764 47880319 - antisense antisense MGP_AJ_T0003440.1 MGP_AJ_G0003153.1 mouse_genomes_project 13 27091102 27093081 + Gm11365 antisense antisense MGP_AJ_T0101717.1 MGP_AJ_G0039661.1 mouse_genomes_project 13 21663883 21671321 - transcribed_processed_pseudogene retained_intron MGP_AJ_T0101718.1 MGP_AJ_G0039661.1 mouse_genomes_project 13 21664619 21665323 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0101719.1 MGP_AJ_G0039661.1 mouse_genomes_project 13 21665063 21671151 - transcribed_processed_pseudogene processed_transcript MGP_AJ_T0101720.1 MGP_AJ_G0039661.1 mouse_genomes_project 13 21665160 21671092 - transcribed_processed_pseudogene processed_transcript MGP_AJ_T0012946.1 MGP_AJ_G0011041.1 mouse_genomes_project 13 72168836 72169175 + processed_pseudogene processed_pseudogene MGP_AJ_T0012894.1 MGP_AJ_G0010989.1 mouse_genomes_project 13 19724653 19725085 + processed_pseudogene processed_pseudogene MGP_AJ_T0003507.1 MGP_AJ_G0003192.1 mouse_genomes_project 13 109524432 109532069 - Gm15288 antisense antisense MGP_AJ_T0002583.1 MGP_AJ_G0002483.1 mouse_genomes_project 13 16070950 16071418 + MGP_AJ_P0002583 Tcrg-V7 TR_V_gene TR_V_gene MGP_AJ_T0012881.1 MGP_AJ_G0010976.1 mouse_genomes_project 13 16888932 16889704 - processed_pseudogene processed_pseudogene MGP_AJ_T0006546.1 MGP_AJ_G0005426.1 mouse_genomes_project 13 28506753 28544884 - Gm11375 lincRNA lincRNA MGP_AJ_T0006547.1 MGP_AJ_G0005426.1 mouse_genomes_project 13 28543342 28544926 - Gm11375 lincRNA lincRNA MGP_AJ_T0037492.1 MGP_AJ_G0020697.1 mouse_genomes_project 13 71077586 71086628 + MGP_AJ_P0037492 Irx4 protein_coding protein_coding MGP_AJ_T0037493.1 MGP_AJ_G0020697.1 mouse_genomes_project 13 71077604 71086628 + MGP_AJ_P0037493 Irx4 protein_coding protein_coding MGP_AJ_T0011351.1 MGP_AJ_G0009473.1 mouse_genomes_project 13 40225480 40225743 - Gm26086 misc_RNA misc_RNA MGP_AJ_T0037295.1 MGP_AJ_G0020601.1 mouse_genomes_project 13 57678829 57681793 - MGP_AJ_P0037295 Gas1 protein_coding protein_coding MGP_AJ_T0102307.1 MGP_AJ_G0040049.1 mouse_genomes_project 13 20184881 20185773 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0099467.1 MGP_AJ_G0037433.1 mouse_genomes_project 13 78042022 78042150 + Gm24635 snRNA snRNA MGP_AJ_T0037469.1 MGP_AJ_G0020688.1 mouse_genomes_project 13 67305860 67391364 + MGP_AJ_P0037469 Nsun2 protein_coding protein_coding MGP_AJ_T0037470.1 MGP_AJ_G0020688.1 mouse_genomes_project 13 67305882 67381842 + Nsun2 protein_coding processed_transcript MGP_AJ_T0037473.1 MGP_AJ_G0020688.1 mouse_genomes_project 13 67387942 67409916 + MGP_AJ_P0037473 Nsun2 protein_coding protein_coding MGP_AJ_T0037474.1 MGP_AJ_G0020688.1 mouse_genomes_project 13 67387986 67409719 + MGP_AJ_P0037474 Nsun2 protein_coding protein_coding MGP_AJ_T0037475.1 MGP_AJ_G0020688.1 mouse_genomes_project 13 67388496 67395490 + Nsun2 protein_coding processed_transcript MGP_AJ_T0037476.1 MGP_AJ_G0020688.1 mouse_genomes_project 13 67397220 67405530 + Nsun2 protein_coding retained_intron MGP_AJ_T0037477.1 MGP_AJ_G0020688.1 mouse_genomes_project 13 67406640 67407569 + Nsun2 protein_coding retained_intron MGP_AJ_T0037626.1 MGP_AJ_G0020747.1 mouse_genomes_project 13 81387170 81549219 + MGP_AJ_P0037626 Mef2c protein_coding protein_coding MGP_AJ_T0037627.1 MGP_AJ_G0020747.1 mouse_genomes_project 13 81387342 81549562 + MGP_AJ_P0037627 Mef2c protein_coding protein_coding MGP_AJ_T0037628.1 MGP_AJ_G0020747.1 mouse_genomes_project 13 81387376 81552954 + MGP_AJ_P0037628 Mef2c protein_coding protein_coding MGP_AJ_T0037629.1 MGP_AJ_G0020747.1 mouse_genomes_project 13 81387376 81476458 + MGP_AJ_P0037629 Mef2c protein_coding protein_coding MGP_AJ_T0037630.1 MGP_AJ_G0020747.1 mouse_genomes_project 13 81387376 81552954 + MGP_AJ_P0037630 Mef2c protein_coding protein_coding MGP_AJ_T0037631.1 MGP_AJ_G0020747.1 mouse_genomes_project 13 81387376 81476524 + MGP_AJ_P0037631 Mef2c protein_coding protein_coding MGP_AJ_T0037632.1 MGP_AJ_G0020747.1 mouse_genomes_project 13 81406612 81511242 + MGP_AJ_P0037632 Mef2c protein_coding protein_coding MGP_AJ_T0037633.1 MGP_AJ_G0020747.1 mouse_genomes_project 13 81408100 81518908 + MGP_AJ_P0037633 Mef2c protein_coding protein_coding MGP_AJ_T0037634.1 MGP_AJ_G0020747.1 mouse_genomes_project 13 81408606 81413161 + Mef2c protein_coding retained_intron MGP_AJ_T0037635.1 MGP_AJ_G0020747.1 mouse_genomes_project 13 81408663 81550336 + MGP_AJ_P0037635 Mef2c protein_coding protein_coding MGP_AJ_T0037636.1 MGP_AJ_G0020747.1 mouse_genomes_project 13 81408664 81511383 + MGP_AJ_P0037636 Mef2c protein_coding protein_coding MGP_AJ_T0037637.1 MGP_AJ_G0020747.1 mouse_genomes_project 13 81408670 81549569 + MGP_AJ_P0037637 Mef2c protein_coding protein_coding MGP_AJ_T0037638.1 MGP_AJ_G0020747.1 mouse_genomes_project 13 81408700 81538788 + MGP_AJ_P0037638 Mef2c protein_coding protein_coding MGP_AJ_T0037639.1 MGP_AJ_G0020747.1 mouse_genomes_project 13 81408729 81519658 + Mef2c protein_coding retained_intron MGP_AJ_T0037640.1 MGP_AJ_G0020747.1 mouse_genomes_project 13 81413949 81511233 + MGP_AJ_P0037640 Mef2c protein_coding protein_coding MGP_AJ_T0037641.1 MGP_AJ_G0020747.1 mouse_genomes_project 13 81455953 81521208 + MGP_AJ_P0037641 Mef2c protein_coding protein_coding MGP_AJ_T0037642.1 MGP_AJ_G0020747.1 mouse_genomes_project 13 81455986 81511420 + MGP_AJ_P0037642 Mef2c protein_coding protein_coding MGP_AJ_T0037643.1 MGP_AJ_G0020747.1 mouse_genomes_project 13 81457212 81552956 + MGP_AJ_P0037643 Mef2c protein_coding protein_coding MGP_AJ_T0037644.1 MGP_AJ_G0020747.1 mouse_genomes_project 13 81457223 81462020 + Mef2c protein_coding retained_intron MGP_AJ_T0037645.1 MGP_AJ_G0020747.1 mouse_genomes_project 13 81457227 81550348 + MGP_AJ_P0037645 Mef2c protein_coding protein_coding MGP_AJ_T0037646.1 MGP_AJ_G0020747.1 mouse_genomes_project 13 81457230 81519009 + MGP_AJ_P0037646 Mef2c protein_coding protein_coding MGP_AJ_T0037647.1 MGP_AJ_G0020747.1 mouse_genomes_project 13 81458750 81538741 + MGP_AJ_P0037647 Mef2c protein_coding protein_coding MGP_AJ_T0037648.1 MGP_AJ_G0020747.1 mouse_genomes_project 13 81458815 81518934 + MGP_AJ_P0037648 Mef2c protein_coding protein_coding MGP_AJ_T0037649.1 MGP_AJ_G0020747.1 mouse_genomes_project 13 81459282 81548510 + MGP_AJ_P0037649 Mef2c protein_coding protein_coding MGP_AJ_T0037650.1 MGP_AJ_G0020747.1 mouse_genomes_project 13 81459282 81552956 + MGP_AJ_P0037650 Mef2c protein_coding protein_coding MGP_AJ_T0037651.1 MGP_AJ_G0020747.1 mouse_genomes_project 13 81459282 81548510 + MGP_AJ_P0037651 Mef2c protein_coding protein_coding MGP_AJ_T0037652.1 MGP_AJ_G0020747.1 mouse_genomes_project 13 81511450 81548614 + MGP_AJ_P0037652 Mef2c protein_coding protein_coding MGP_AJ_T0037653.1 MGP_AJ_G0020747.1 mouse_genomes_project 13 81518833 81541435 + MGP_AJ_P0037653 Mef2c protein_coding nonsense_mediated_decay MGP_AJ_T0037654.1 MGP_AJ_G0020747.1 mouse_genomes_project 13 81538765 81548617 + MGP_AJ_P0037654 Mef2c protein_coding protein_coding MGP_AJ_T0012938.1 MGP_AJ_G0011033.1 mouse_genomes_project 13 65397413 65398212 + processed_pseudogene processed_pseudogene MGP_AJ_T0037310.1 MGP_AJ_G0020613.1 mouse_genomes_project 13 58677329 58682363 - MGP_AJ_P0037310 Ctsr protein_coding protein_coding MGP_AJ_T0000887.1 MGP_AJ_G0000821.1 mouse_genomes_project 13 83287629 83287867 - TEC TEC MGP_AJ_T0036560.1 MGP_AJ_G0020353.1 mouse_genomes_project 13 24670479 24679243 - MGP_AJ_P0036560 Prl7b1 protein_coding protein_coding MGP_AJ_T0037213.1 MGP_AJ_G0020582.1 mouse_genomes_project 13 55639074 55646050 + MGP_AJ_P0037213 Idnk protein_coding protein_coding MGP_AJ_T0037214.1 MGP_AJ_G0020582.1 mouse_genomes_project 13 55639074 55646050 + MGP_AJ_P0037214 Idnk protein_coding protein_coding MGP_AJ_T0036491.1 MGP_AJ_G0020326.1 mouse_genomes_project 13 21437641 21534000 + MGP_AJ_P0036491 Cmah protein_coding protein_coding MGP_AJ_T0036492.1 MGP_AJ_G0020326.1 mouse_genomes_project 13 21456595 21499248 + Cmah protein_coding processed_transcript MGP_AJ_T0036493.1 MGP_AJ_G0020326.1 mouse_genomes_project 13 21479227 21498807 + Cmah protein_coding processed_transcript MGP_AJ_T0036494.1 MGP_AJ_G0020326.1 mouse_genomes_project 13 21479550 21500215 + Cmah protein_coding processed_transcript MGP_AJ_T0037219.1 MGP_AJ_G0020585.1 mouse_genomes_project 13 55770516 55838116 - MGP_AJ_P0037219 Kif27 protein_coding protein_coding MGP_AJ_T0101954.1 MGP_AJ_G0039795.1 mouse_genomes_project 13 20669950 20670270 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_AJ_T0037317.1 MGP_AJ_G0020620.1 mouse_genomes_project 13 60510402 60532289 - MGP_AJ_P0037317 Fbp2 protein_coding protein_coding MGP_AJ_T0036227.1 MGP_AJ_G0020184.1 mouse_genomes_project 13 8768379 8843091 - MGP_AJ_P0036227 Mtr protein_coding protein_coding MGP_AJ_T0037221.1 MGP_AJ_G0020587.1 mouse_genomes_project 13 55877049 55890416 - MGP_AJ_P0037221 Hnrnpk protein_coding protein_coding MGP_AJ_T0037222.1 MGP_AJ_G0020587.1 mouse_genomes_project 13 55877081 55882798 - MGP_AJ_P0037222 Hnrnpk protein_coding unknown_likely_coding MGP_AJ_T0037223.1 MGP_AJ_G0020587.1 mouse_genomes_project 13 55877146 55884924 - MGP_AJ_P0037223 Hnrnpk protein_coding protein_coding MGP_AJ_T0037224.1 MGP_AJ_G0020587.1 mouse_genomes_project 13 55877146 55889537 - MGP_AJ_P0037224 Hnrnpk protein_coding protein_coding MGP_AJ_T0037225.1 MGP_AJ_G0020587.1 mouse_genomes_project 13 55877146 55889575 - MGP_AJ_P0037225 Hnrnpk protein_coding protein_coding MGP_AJ_T0037226.1 MGP_AJ_G0020587.1 mouse_genomes_project 13 55877244 55889722 - MGP_AJ_P0037226 Hnrnpk protein_coding protein_coding MGP_AJ_T0037227.1 MGP_AJ_G0020587.1 mouse_genomes_project 13 55880145 55889215 - MGP_AJ_P0037227 Hnrnpk protein_coding protein_coding MGP_AJ_T0037228.1 MGP_AJ_G0020587.1 mouse_genomes_project 13 55880337 55882589 - Hnrnpk protein_coding retained_intron MGP_AJ_T0037229.1 MGP_AJ_G0020587.1 mouse_genomes_project 13 55880400 55883934 - Hnrnpk protein_coding retained_intron MGP_AJ_T0037230.1 MGP_AJ_G0020587.1 mouse_genomes_project 13 55880458 55889176 - MGP_AJ_P0037230 Hnrnpk protein_coding protein_coding MGP_AJ_T0037231.1 MGP_AJ_G0020587.1 mouse_genomes_project 13 55880487 55883815 - Hnrnpk protein_coding retained_intron MGP_AJ_T0037232.1 MGP_AJ_G0020587.1 mouse_genomes_project 13 55882033 55889560 - MGP_AJ_P0037232 Hnrnpk protein_coding protein_coding MGP_AJ_T0037233.1 MGP_AJ_G0020587.1 mouse_genomes_project 13 55882063 55889580 - MGP_AJ_P0037233 Hnrnpk protein_coding protein_coding MGP_AJ_T0037234.1 MGP_AJ_G0020587.1 mouse_genomes_project 13 55882133 55884886 - Hnrnpk protein_coding retained_intron MGP_AJ_T0037235.1 MGP_AJ_G0020587.1 mouse_genomes_project 13 55882138 55884886 - MGP_AJ_P0037235 Hnrnpk protein_coding protein_coding MGP_AJ_T0037236.1 MGP_AJ_G0020587.1 mouse_genomes_project 13 55882757 55889183 - Hnrnpk protein_coding retained_intron MGP_AJ_T0037237.1 MGP_AJ_G0020587.1 mouse_genomes_project 13 55883905 55889189 - MGP_AJ_P0037237 Hnrnpk protein_coding protein_coding MGP_AJ_T0037238.1 MGP_AJ_G0020587.1 mouse_genomes_project 13 55885594 55889575 - Hnrnpk protein_coding retained_intron MGP_AJ_T0003506.1 MGP_AJ_G0003191.1 mouse_genomes_project 13 104785372 104787265 + Gm28988 antisense antisense MGP_AJ_T0017368.1 MGP_AJ_G0015237.1 mouse_genomes_project 13 109767866 109768427 + processed_transcript processed_transcript MGP_AJ_T0036940.1 MGP_AJ_G0020505.1 mouse_genomes_project 13 49064460 49069889 + MGP_AJ_P0036940 Cks2 protein_coding protein_coding MGP_AJ_T0037663.1 MGP_AJ_G0020750.1 mouse_genomes_project 13 83102827 83177823 - MGP_AJ_P0037663 Rasa1 protein_coding protein_coding MGP_AJ_T0037664.1 MGP_AJ_G0020750.1 mouse_genomes_project 13 83103862 83106403 - Rasa1 protein_coding retained_intron MGP_AJ_T0037665.1 MGP_AJ_G0020750.1 mouse_genomes_project 13 83104098 83109747 - Rasa1 protein_coding retained_intron MGP_AJ_T0037666.1 MGP_AJ_G0020750.1 mouse_genomes_project 13 83109415 83114752 - Rasa1 protein_coding retained_intron MGP_AJ_T0037667.1 MGP_AJ_G0020750.1 mouse_genomes_project 13 83112265 83114063 - Rasa1 protein_coding retained_intron MGP_AJ_T0037668.1 MGP_AJ_G0020750.1 mouse_genomes_project 13 83116740 83119114 - Rasa1 protein_coding retained_intron MGP_AJ_T0037669.1 MGP_AJ_G0020750.1 mouse_genomes_project 13 83117330 83118519 - Rasa1 protein_coding retained_intron MGP_AJ_T0037670.1 MGP_AJ_G0020750.1 mouse_genomes_project 13 83126252 83135300 - Rasa1 protein_coding retained_intron MGP_AJ_T0037671.1 MGP_AJ_G0020750.1 mouse_genomes_project 13 83132351 83139296 - Rasa1 protein_coding retained_intron MGP_AJ_T0037112.1 MGP_AJ_G0020545.1 mouse_genomes_project 13 52773667 52778254 - MGP_AJ_P0037112 Mxd3 protein_coding protein_coding MGP_AJ_T0037113.1 MGP_AJ_G0020545.1 mouse_genomes_project 13 52773981 52778229 - Mxd3 protein_coding retained_intron MGP_AJ_T0037114.1 MGP_AJ_G0020545.1 mouse_genomes_project 13 52774211 52777848 - Mxd3 protein_coding processed_transcript MGP_AJ_T0036398.1 MGP_AJ_G0020264.1 mouse_genomes_project 13 18876619 18884188 - MGP_AJ_P0036398 Prss16 protein_coding protein_coding MGP_AJ_T0036399.1 MGP_AJ_G0020264.1 mouse_genomes_project 13 18877003 18879666 - Prss16 protein_coding processed_transcript MGP_AJ_T0036400.1 MGP_AJ_G0020264.1 mouse_genomes_project 13 18877369 18880862 - Prss16 protein_coding processed_transcript MGP_AJ_T0036401.1 MGP_AJ_G0020264.1 mouse_genomes_project 13 18881678 18884189 - Prss16 protein_coding processed_transcript MGP_AJ_T0000902.1 MGP_AJ_G0000836.1 mouse_genomes_project 13 114300059 114302984 + TEC TEC MGP_AJ_T0009931.1 MGP_AJ_G0008053.1 mouse_genomes_project 13 45781365 45781462 + Gm24111 miRNA miRNA MGP_AJ_T0009939.1 MGP_AJ_G0008061.1 mouse_genomes_project 13 55505191 55505267 - Mir874 miRNA miRNA MGP_AJ_T0037321.1 MGP_AJ_G0020622.1 mouse_genomes_project 13 60688852 60957914 + MGP_AJ_P0037321 2010111I01Rik protein_coding protein_coding MGP_AJ_T0037322.1 MGP_AJ_G0020622.1 mouse_genomes_project 13 60689000 60960543 + MGP_AJ_P0037322 2010111I01Rik protein_coding protein_coding MGP_AJ_T0037323.1 MGP_AJ_G0020622.1 mouse_genomes_project 13 60940919 60984362 + MGP_AJ_P0037323 2010111I01Rik protein_coding protein_coding MGP_AJ_T0006609.1 MGP_AJ_G0005469.1 mouse_genomes_project 13 78853073 78859137 - Gm4211 lincRNA lincRNA MGP_AJ_T0036409.1 MGP_AJ_G0020272.1 mouse_genomes_project 13 19175299 19176190 + MGP_AJ_P0036409 Vmn1r194 protein_coding protein_coding MGP_AJ_T0102304.1 MGP_AJ_G0040046.1 mouse_genomes_project 13 19988529 19988819 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0012888.1 MGP_AJ_G0010983.1 mouse_genomes_project 13 18825148 18825724 - processed_pseudogene processed_pseudogene MGP_AJ_T0037156.1 MGP_AJ_G0020560.1 mouse_genomes_project 13 53083838 53092816 + MGP_AJ_P0037156 Caml protein_coding protein_coding MGP_AJ_T0037157.1 MGP_AJ_G0020560.1 mouse_genomes_project 13 53084031 53086082 + Caml protein_coding retained_intron MGP_AJ_T0037158.1 MGP_AJ_G0020560.1 mouse_genomes_project 13 53088694 53092816 + Caml protein_coding retained_intron MGP_AJ_T0002585.1 MGP_AJ_G0002485.1 mouse_genomes_project 13 16083258 16083832 + MGP_AJ_P0002585 Tcrg-V6 TR_V_gene TR_V_gene MGP_AJ_T0002586.1 MGP_AJ_G0002485.1 mouse_genomes_project 13 16083270 16083832 + MGP_AJ_P0002586 Tcrg-V6 TR_V_gene TR_V_gene MGP_AJ_T0036415.1 MGP_AJ_G0020278.1 mouse_genomes_project 13 19317594 19318533 + MGP_AJ_P0036415 Vmn1r200 protein_coding protein_coding MGP_AJ_T0037774.1 MGP_AJ_G0020779.1 mouse_genomes_project 13 91250411 91319222 - MGP_AJ_P0037774 Jmy protein_coding protein_coding MGP_AJ_T0099468.1 MGP_AJ_G0037434.1 mouse_genomes_project 13 87740293 87740395 - Gm24498 snRNA snRNA MGP_AJ_T0102327.1 MGP_AJ_G0040069.1 mouse_genomes_project 13 40038014 40038903 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0037423.1 MGP_AJ_G0020661.1 mouse_genomes_project 13 65017433 65060443 - MGP_AJ_P0037423 Gm28041 protein_coding nonsense_mediated_decay MGP_AJ_T0012936.1 MGP_AJ_G0011031.1 mouse_genomes_project 13 62206279 62207655 + processed_pseudogene processed_pseudogene MGP_AJ_T0102324.1 MGP_AJ_G0040066.1 mouse_genomes_project 13 30943375 30944192 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0036333.1 MGP_AJ_G0020227.1 mouse_genomes_project 13 18163402 18170767 + MGP_AJ_P0036333 Gpx6 protein_coding protein_coding MGP_AJ_T0036334.1 MGP_AJ_G0020227.1 mouse_genomes_project 13 18168406 18170771 + Gpx6 protein_coding processed_transcript MGP_AJ_T0037311.1 MGP_AJ_G0020614.1 mouse_genomes_project 13 58735333 58743612 - MGP_AJ_P0037311 Cts6 protein_coding protein_coding MGP_AJ_T0037048.1 MGP_AJ_G0020532.1 mouse_genomes_project 13 52162762 52176000 - MGP_AJ_P0037048 Gprin1 protein_coding protein_coding MGP_AJ_T0012914.1 MGP_AJ_G0011009.1 mouse_genomes_project 13 26301462 26301971 - processed_pseudogene processed_pseudogene MGP_AJ_T0036224.1 MGP_AJ_G0020183.1 mouse_genomes_project 13 8119534 8688948 - MGP_AJ_P0036224 Ryr2 protein_coding unknown_likely_coding MGP_AJ_T0036225.1 MGP_AJ_G0020183.1 mouse_genomes_project 13 8119544 8689447 - MGP_AJ_P0036225 Ryr2 protein_coding protein_coding MGP_AJ_T0036226.1 MGP_AJ_G0020183.1 mouse_genomes_project 13 8119544 8689447 - MGP_AJ_P0036226 Ryr2 protein_coding protein_coding MGP_AJ_T0037944.1 MGP_AJ_G0020839.1 mouse_genomes_project 13 98535314 98557002 - MGP_AJ_P0037944 Marveld2 protein_coding protein_coding MGP_AJ_T0037945.1 MGP_AJ_G0020839.1 mouse_genomes_project 13 98535314 98556975 - MGP_AJ_P0037945 Marveld2 protein_coding protein_coding MGP_AJ_T0037946.1 MGP_AJ_G0020839.1 mouse_genomes_project 13 98536587 98556942 - MGP_AJ_P0037946 Marveld2 protein_coding protein_coding MGP_AJ_T0037574.1 MGP_AJ_G0020735.1 mouse_genomes_project 13 74313197 74950315 + MGP_AJ_P0037574 Mctp1 protein_coding protein_coding MGP_AJ_T0037575.1 MGP_AJ_G0020735.1 mouse_genomes_project 13 74504049 74678838 + MGP_AJ_P0037575 Mctp1 protein_coding protein_coding MGP_AJ_T0037576.1 MGP_AJ_G0020735.1 mouse_genomes_project 13 74504103 74649396 + MGP_AJ_P0037576 Mctp1 protein_coding protein_coding MGP_AJ_T0037577.1 MGP_AJ_G0020735.1 mouse_genomes_project 13 74504136 74948466 + MGP_AJ_P0037577 Mctp1 protein_coding protein_coding MGP_AJ_T0037578.1 MGP_AJ_G0020735.1 mouse_genomes_project 13 74640234 74747324 + Mctp1 protein_coding retained_intron MGP_AJ_T0037579.1 MGP_AJ_G0020735.1 mouse_genomes_project 13 74743696 74746565 + Mctp1 protein_coding retained_intron MGP_AJ_T0037580.1 MGP_AJ_G0020735.1 mouse_genomes_project 13 74743935 74949253 + Mctp1 protein_coding retained_intron MGP_AJ_T0037581.1 MGP_AJ_G0020735.1 mouse_genomes_project 13 74743972 74746767 + Mctp1 protein_coding retained_intron MGP_AJ_T0006652.1 MGP_AJ_G0005500.1 mouse_genomes_project 13 112582570 112667044 + 4930544M13Rik lincRNA lincRNA MGP_AJ_T0006653.1 MGP_AJ_G0005500.1 mouse_genomes_project 13 112582570 112629468 + 4930544M13Rik lincRNA lincRNA MGP_AJ_T0037467.1 MGP_AJ_G0020687.1 mouse_genomes_project 13 67269973 67306713 - MGP_AJ_P0037467 Papd7 protein_coding protein_coding MGP_AJ_T0037468.1 MGP_AJ_G0020687.1 mouse_genomes_project 13 67269976 67305976 - MGP_AJ_P0037468 Papd7 protein_coding protein_coding MGP_AJ_T0017356.1 MGP_AJ_G0015229.1 mouse_genomes_project 13 32314797 32317280 + 1700011B04Rik processed_transcript retained_intron MGP_AJ_T0017357.1 MGP_AJ_G0015229.1 mouse_genomes_project 13 32316152 32322524 + 1700011B04Rik processed_transcript lincRNA MGP_AJ_T0006538.1 MGP_AJ_G0005419.1 mouse_genomes_project 13 27209064 27214402 + Gm11368 lincRNA lincRNA MGP_AJ_T0037371.1 MGP_AJ_G0020631.1 mouse_genomes_project 13 61983759 62003500 - MGP_AJ_P0037371 Aaed1 protein_coding protein_coding MGP_AJ_T0102305.1 MGP_AJ_G0040047.1 mouse_genomes_project 13 20021693 20022619 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0102317.1 MGP_AJ_G0040059.1 mouse_genomes_project 13 30251461 30253992 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0037220.1 MGP_AJ_G0020586.1 mouse_genomes_project 13 55866188 55871133 - MGP_AJ_P0037220 2210016F16Rik protein_coding protein_coding MGP_AJ_T0037119.1 MGP_AJ_G0020548.1 mouse_genomes_project 13 52851384 52865158 + MGP_AJ_P0037119 Slc34a1 protein_coding protein_coding MGP_AJ_T0038102.1 MGP_AJ_G0020879.1 mouse_genomes_project 13 108307713 108312271 - MGP_AJ_P0038102 Gapt protein_coding protein_coding MGP_AJ_T0038059.1 MGP_AJ_G0020870.1 mouse_genomes_project 13 104977527 104979236 + MGP_AJ_P0038059 3830408C21Rik protein_coding protein_coding MGP_AJ_T0036773.1 MGP_AJ_G0020448.1 mouse_genomes_project 13 39467753 39474469 + MGP_AJ_P0036773 Edn1 protein_coding protein_coding MGP_AJ_T0038125.1 MGP_AJ_G0020886.1 mouse_genomes_project 13 110430600 110477148 + MGP_AJ_P0038125 Il6st protein_coding protein_coding MGP_AJ_T0038126.1 MGP_AJ_G0020886.1 mouse_genomes_project 13 110430611 110471547 + MGP_AJ_P0038126 Il6st protein_coding protein_coding MGP_AJ_T0038127.1 MGP_AJ_G0020886.1 mouse_genomes_project 13 110430642 110450350 + MGP_AJ_P0038127 Il6st protein_coding protein_coding MGP_AJ_T0038128.1 MGP_AJ_G0020886.1 mouse_genomes_project 13 110430771 110471601 + MGP_AJ_P0038128 Il6st protein_coding nonsense_mediated_decay MGP_AJ_T0038129.1 MGP_AJ_G0020886.1 mouse_genomes_project 13 110434158 110446771 + MGP_AJ_P0038129 Il6st protein_coding protein_coding MGP_AJ_T0038130.1 MGP_AJ_G0020886.1 mouse_genomes_project 13 110439299 110468155 + MGP_AJ_P0038130 Il6st protein_coding protein_coding MGP_AJ_T0038131.1 MGP_AJ_G0020886.1 mouse_genomes_project 13 110441604 110473911 + MGP_AJ_P0038131 Il6st protein_coding protein_coding MGP_AJ_T0038132.1 MGP_AJ_G0020886.1 mouse_genomes_project 13 110441642 110470815 + MGP_AJ_P0038132 Il6st protein_coding protein_coding MGP_AJ_T0038133.1 MGP_AJ_G0020886.1 mouse_genomes_project 13 110441642 110470815 + MGP_AJ_P0038133 Il6st protein_coding protein_coding MGP_AJ_T0038134.1 MGP_AJ_G0020886.1 mouse_genomes_project 13 110441642 110471501 + MGP_AJ_P0038134 Il6st protein_coding protein_coding MGP_AJ_T0002587.1 MGP_AJ_G0002486.1 mouse_genomes_project 13 16085180 16085628 + MGP_AJ_P0002587 Tcrg-V5 TR_V_gene TR_V_gene MGP_AJ_T0002588.1 MGP_AJ_G0002486.1 mouse_genomes_project 13 16085335 16085628 + MGP_AJ_P0002588 Tcrg-V5 TR_V_gene TR_V_gene MGP_AJ_T0006517.1 MGP_AJ_G0005404.1 mouse_genomes_project 13 84733 85392 + lincRNA lincRNA MGP_AJ_T0037183.1 MGP_AJ_G0020573.1 mouse_genomes_project 13 53950471 53953445 - MGP_AJ_P0037183 Il9 protein_coding protein_coding MGP_AJ_T0036991.1 MGP_AJ_G0020519.1 mouse_genomes_project 13 51495232 51531698 + MGP_AJ_P0036991 Sfxn1 protein_coding protein_coding MGP_AJ_T0037300.1 MGP_AJ_G0020605.1 mouse_genomes_project 13 58309873 58314471 - MGP_AJ_P0037300 Ctsll3 protein_coding protein_coding MGP_AJ_T0036314.1 MGP_AJ_G0020218.1 mouse_genomes_project 13 16551896 16603678 - MGP_AJ_P0036314 Nme8 protein_coding protein_coding MGP_AJ_T0036315.1 MGP_AJ_G0020218.1 mouse_genomes_project 13 16551896 16603712 - MGP_AJ_P0036315 Nme8 protein_coding protein_coding MGP_AJ_T0036316.1 MGP_AJ_G0020218.1 mouse_genomes_project 13 16583473 16595575 - Nme8 protein_coding processed_transcript MGP_AJ_T0037816.1 MGP_AJ_G0020793.1 mouse_genomes_project 13 93180800 93205471 - MGP_AJ_P0037816 Aggf1 protein_coding protein_coding MGP_AJ_T0037817.1 MGP_AJ_G0020793.1 mouse_genomes_project 13 93183619 93205453 - Aggf1 protein_coding processed_transcript MGP_AJ_T0036458.1 MGP_AJ_G0020311.1 mouse_genomes_project 13 20787472 20792051 + MGP_AJ_P0036458 Hist1h1c protein_coding protein_coding MGP_AJ_T0038217.1 MGP_AJ_G0020929.1 mouse_genomes_project 13 117904745 117905974 + MGP_AJ_P0038217 protein_coding protein_coding MGP_AJ_T0038219.1 MGP_AJ_G0020929.1 mouse_genomes_project 13 117905513 117905910 + MGP_AJ_P0038219 protein_coding protein_coding MGP_AJ_T0003449.1 MGP_AJ_G0003160.1 mouse_genomes_project 13 40292108 40300089 - Gm15813 antisense antisense MGP_AJ_T0100749.1 MGP_AJ_G0038715.1 mouse_genomes_project 13 93162748 93162880 + Gm22661 snoRNA snoRNA MGP_AJ_T0012901.1 MGP_AJ_G0010996.1 mouse_genomes_project 13 21378510 21378957 + processed_pseudogene processed_pseudogene MGP_AJ_T0036764.1 MGP_AJ_G0020443.1 mouse_genomes_project 13 38469868 38649613 - MGP_AJ_P0036764 Nedd9 protein_coding protein_coding MGP_AJ_T0036765.1 MGP_AJ_G0020443.1 mouse_genomes_project 13 38469868 38519854 - MGP_AJ_P0036765 Nedd9 protein_coding protein_coding MGP_AJ_T0009923.1 MGP_AJ_G0008045.1 mouse_genomes_project 13 20730631 20730769 + Gm44350 miRNA miRNA MGP_AJ_T0036353.1 MGP_AJ_G0020234.1 mouse_genomes_project 13 18334492 18335319 - MGP_AJ_P0036353 Gm10065 protein_coding protein_coding MGP_AJ_T0037404.1 MGP_AJ_G0020649.1 mouse_genomes_project 13 64590279 64652990 + MGP_AJ_P0037404 Ptdss1 protein_coding protein_coding MGP_AJ_T0037164.1 MGP_AJ_G0020564.1 mouse_genomes_project 13 53190518 53239524 + MGP_AJ_P0037164 Pcbd2 protein_coding protein_coding MGP_AJ_T0037165.1 MGP_AJ_G0020564.1 mouse_genomes_project 13 53190518 53239522 + MGP_AJ_P0037165 Pcbd2 protein_coding protein_coding MGP_AJ_T0009945.1 MGP_AJ_G0008067.1 mouse_genomes_project 13 60958742 60958816 + Mir23b miRNA miRNA MGP_AJ_T0037801.1 MGP_AJ_G0020791.1 mouse_genomes_project 13 92853467 93078553 - MGP_AJ_P0037801 Pde8b protein_coding protein_coding MGP_AJ_T0037802.1 MGP_AJ_G0020791.1 mouse_genomes_project 13 92853472 92863267 - MGP_AJ_P0037802 Pde8b protein_coding protein_coding MGP_AJ_T0037803.1 MGP_AJ_G0020791.1 mouse_genomes_project 13 92853518 93051171 - MGP_AJ_P0037803 Pde8b protein_coding protein_coding MGP_AJ_T0037804.1 MGP_AJ_G0020791.1 mouse_genomes_project 13 92854343 92875148 - Pde8b protein_coding processed_transcript MGP_AJ_T0037805.1 MGP_AJ_G0020791.1 mouse_genomes_project 13 92855116 93078383 - MGP_AJ_P0037805 Pde8b protein_coding protein_coding MGP_AJ_T0037806.1 MGP_AJ_G0020791.1 mouse_genomes_project 13 92855133 93050918 - MGP_AJ_P0037806 Pde8b protein_coding protein_coding MGP_AJ_T0037807.1 MGP_AJ_G0020791.1 mouse_genomes_project 13 92855133 93050918 - MGP_AJ_P0037807 Pde8b protein_coding protein_coding MGP_AJ_T0037808.1 MGP_AJ_G0020791.1 mouse_genomes_project 13 92855133 93050918 - MGP_AJ_P0037808 Pde8b protein_coding protein_coding MGP_AJ_T0037809.1 MGP_AJ_G0020791.1 mouse_genomes_project 13 92862959 93051660 - MGP_AJ_P0037809 Pde8b protein_coding protein_coding MGP_AJ_T0037810.1 MGP_AJ_G0020791.1 mouse_genomes_project 13 92872103 93078491 - MGP_AJ_P0037810 Pde8b protein_coding protein_coding MGP_AJ_T0037811.1 MGP_AJ_G0020791.1 mouse_genomes_project 13 92872549 92882057 - Pde8b protein_coding retained_intron MGP_AJ_T0037812.1 MGP_AJ_G0020791.1 mouse_genomes_project 13 92918947 93051171 - Pde8b protein_coding retained_intron MGP_AJ_T0037813.1 MGP_AJ_G0020791.1 mouse_genomes_project 13 92929780 93078532 - MGP_AJ_P0037813 Pde8b protein_coding protein_coding MGP_AJ_T0037814.1 MGP_AJ_G0020791.1 mouse_genomes_project 13 92933360 93014894 - Pde8b protein_coding processed_transcript MGP_AJ_T0038142.1 MGP_AJ_G0020892.1 mouse_genomes_project 13 110909300 110951410 + MGP_AJ_P0038142 Dhx29 protein_coding protein_coding MGP_AJ_T0036664.1 MGP_AJ_G0020401.1 mouse_genomes_project 13 31198699 31235037 + MGP_AJ_P0036664 Bphl protein_coding protein_coding MGP_AJ_T0036922.1 MGP_AJ_G0020499.1 mouse_genomes_project 13 47803971 47819877 + MGP_AJ_P0036922 Fbxw17 protein_coding protein_coding MGP_AJ_T0036923.1 MGP_AJ_G0020499.1 mouse_genomes_project 13 47803988 47811764 + MGP_AJ_P0036923 Fbxw17 protein_coding nonsense_mediated_decay MGP_AJ_T0036924.1 MGP_AJ_G0020499.1 mouse_genomes_project 13 47803993 47816365 + Fbxw17 protein_coding processed_transcript MGP_AJ_T0036925.1 MGP_AJ_G0020499.1 mouse_genomes_project 13 47803993 47819888 + MGP_AJ_P0036925 Fbxw17 protein_coding nonsense_mediated_decay MGP_AJ_T0036926.1 MGP_AJ_G0020499.1 mouse_genomes_project 13 47804002 47806387 + Fbxw17 protein_coding retained_intron MGP_AJ_T0036927.1 MGP_AJ_G0020499.1 mouse_genomes_project 13 47809962 47813398 + Fbxw17 protein_coding processed_transcript MGP_AJ_T0036928.1 MGP_AJ_G0020499.1 mouse_genomes_project 13 47816077 47818218 + Fbxw17 protein_coding retained_intron MGP_AJ_T0036929.1 MGP_AJ_G0020499.1 mouse_genomes_project 13 47817228 47819884 + Fbxw17 protein_coding retained_intron MGP_AJ_T0036930.1 MGP_AJ_G0020499.1 mouse_genomes_project 13 47817278 47818484 + Fbxw17 protein_coding retained_intron MGP_AJ_T0036931.1 MGP_AJ_G0020499.1 mouse_genomes_project 13 47817464 47818347 + Fbxw17 protein_coding retained_intron MGP_AJ_T0036932.1 MGP_AJ_G0020499.1 mouse_genomes_project 13 47817783 47818461 + Fbxw17 protein_coding retained_intron MGP_AJ_T0036933.1 MGP_AJ_G0020499.1 mouse_genomes_project 13 47817818 47819877 + MGP_AJ_P0036933 Fbxw17 protein_coding protein_coding MGP_AJ_T0036934.1 MGP_AJ_G0020499.1 mouse_genomes_project 13 47818292 47819871 + MGP_AJ_P0036934 Fbxw17 protein_coding protein_coding MGP_AJ_T0038143.1 MGP_AJ_G0020893.1 mouse_genomes_project 13 110969686 110972662 + MGP_AJ_P0038143 Ccno protein_coding protein_coding MGP_AJ_T0037720.1 MGP_AJ_G0020763.1 mouse_genomes_project 13 89647889 89659433 - MGP_AJ_P0037720 Zcchc9 protein_coding protein_coding MGP_AJ_T0037721.1 MGP_AJ_G0020763.1 mouse_genomes_project 13 89647890 89659433 - Zcchc9 protein_coding retained_intron MGP_AJ_T0037722.1 MGP_AJ_G0020763.1 mouse_genomes_project 13 89647890 89652337 - MGP_AJ_P0037722 Zcchc9 protein_coding protein_coding MGP_AJ_T0037723.1 MGP_AJ_G0020763.1 mouse_genomes_project 13 89650190 89659389 - Zcchc9 protein_coding retained_intron MGP_AJ_T0037724.1 MGP_AJ_G0020763.1 mouse_genomes_project 13 89651841 89652352 - Zcchc9 protein_coding retained_intron MGP_AJ_T0100750.1 MGP_AJ_G0038716.1 mouse_genomes_project 13 97597148 97597279 - Gm24471 snoRNA snoRNA MGP_AJ_T0006521.1 MGP_AJ_G0005407.1 mouse_genomes_project 13 9223050 9259432 - lincRNA lincRNA MGP_AJ_T0037296.1 MGP_AJ_G0020602.1 mouse_genomes_project 13 57720309 57721311 + MGP_AJ_P0037296 Gm5084 protein_coding protein_coding MGP_AJ_T0009965.1 MGP_AJ_G0008087.1 mouse_genomes_project 13 111018045 111018130 + Mir449b miRNA miRNA MGP_AJ_T0006530.1 MGP_AJ_G0005415.1 mouse_genomes_project 13 23383285 23412098 - 1700092E19Rik lincRNA lincRNA MGP_AJ_T0006531.1 MGP_AJ_G0005415.1 mouse_genomes_project 13 23405513 23412039 - 1700092E19Rik lincRNA lincRNA MGP_AJ_T0037780.1 MGP_AJ_G0020783.1 mouse_genomes_project 13 91596746 91771494 + MGP_AJ_P0037780 Arsb protein_coding protein_coding MGP_AJ_T0036635.1 MGP_AJ_G0020394.1 mouse_genomes_project 13 30676744 30692647 + MGP_AJ_P0036635 protein_coding protein_coding MGP_AJ_T0006579.1 MGP_AJ_G0005450.1 mouse_genomes_project 13 50820905 50825205 + Gm2762 lincRNA lincRNA MGP_AJ_T0006580.1 MGP_AJ_G0005450.1 mouse_genomes_project 13 50820921 50881296 + Gm2762 lincRNA lincRNA MGP_AJ_T0006581.1 MGP_AJ_G0005450.1 mouse_genomes_project 13 50820937 50882401 + Gm2762 lincRNA lincRNA MGP_AJ_T0006582.1 MGP_AJ_G0005450.1 mouse_genomes_project 13 50821345 50822587 + Gm2762 lincRNA lincRNA MGP_AJ_T0006583.1 MGP_AJ_G0005450.1 mouse_genomes_project 13 50821539 50829856 + Gm2762 lincRNA lincRNA MGP_AJ_T0006584.1 MGP_AJ_G0005450.1 mouse_genomes_project 13 50821539 50825401 + Gm2762 lincRNA lincRNA MGP_AJ_T0006585.1 MGP_AJ_G0005450.1 mouse_genomes_project 13 50822583 50825417 + Gm2762 lincRNA lincRNA MGP_AJ_T0006586.1 MGP_AJ_G0005450.1 mouse_genomes_project 13 50827670 50830337 + Gm2762 lincRNA lincRNA MGP_AJ_T0006570.1 MGP_AJ_G0005443.1 mouse_genomes_project 13 43150984 43152240 + 5033430I15Rik lincRNA lincRNA MGP_AJ_T0006571.1 MGP_AJ_G0005443.1 mouse_genomes_project 13 43151082 43151909 + 5033430I15Rik lincRNA lincRNA MGP_AJ_T0100735.1 MGP_AJ_G0038701.1 mouse_genomes_project 13 62804932 62805083 + Gm24130 snoRNA snoRNA MGP_AJ_T0038166.1 MGP_AJ_G0020907.1 mouse_genomes_project 13 112780897 112794591 + MGP_AJ_P0038166 Mocs2 protein_coding protein_coding MGP_AJ_T0038167.1 MGP_AJ_G0020907.1 mouse_genomes_project 13 112780946 112783595 + Mocs2 protein_coding retained_intron MGP_AJ_T0038168.1 MGP_AJ_G0020907.1 mouse_genomes_project 13 112780960 112784508 + Mocs2 protein_coding retained_intron MGP_AJ_T0038169.1 MGP_AJ_G0020907.1 mouse_genomes_project 13 112780965 112790996 + MGP_AJ_P0038169 Mocs2 protein_coding protein_coding MGP_AJ_T0038170.1 MGP_AJ_G0020907.1 mouse_genomes_project 13 112780972 112791520 + Mocs2 protein_coding retained_intron MGP_AJ_T0038171.1 MGP_AJ_G0020907.1 mouse_genomes_project 13 112780972 112791188 + MGP_AJ_P0038171 Mocs2 protein_coding nonsense_mediated_decay MGP_AJ_T0038172.1 MGP_AJ_G0020907.1 mouse_genomes_project 13 112780979 112788029 + Mocs2 protein_coding retained_intron MGP_AJ_T0038173.1 MGP_AJ_G0020907.1 mouse_genomes_project 13 112780985 112788759 + MGP_AJ_P0038173 Mocs2 protein_coding protein_coding MGP_AJ_T0038174.1 MGP_AJ_G0020907.1 mouse_genomes_project 13 112780989 112791058 + MGP_AJ_P0038174 Mocs2 protein_coding protein_coding MGP_AJ_T0038175.1 MGP_AJ_G0020907.1 mouse_genomes_project 13 112781607 112787737 + MGP_AJ_P0038175 Mocs2 protein_coding protein_coding MGP_AJ_T0012874.1 MGP_AJ_G0010969.1 mouse_genomes_project 13 15877 16661 - processed_pseudogene processed_pseudogene MGP_AJ_T0102314.1 MGP_AJ_G0040056.1 mouse_genomes_project 13 24758394 24766064 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0037593.1 MGP_AJ_G0020740.1 mouse_genomes_project 13 76065645 76076507 - MGP_AJ_P0037593 Nr2f1 protein_coding protein_coding MGP_AJ_T0037594.1 MGP_AJ_G0020740.1 mouse_genomes_project 13 76065824 76073711 - MGP_AJ_P0037594 Nr2f1 protein_coding protein_coding MGP_AJ_T0037595.1 MGP_AJ_G0020740.1 mouse_genomes_project 13 76066343 76074603 - MGP_AJ_P0037595 Nr2f1 protein_coding protein_coding MGP_AJ_T0037596.1 MGP_AJ_G0020740.1 mouse_genomes_project 13 76066404 76073045 - MGP_AJ_P0037596 Nr2f1 protein_coding protein_coding MGP_AJ_T0037597.1 MGP_AJ_G0020740.1 mouse_genomes_project 13 76066543 76067115 - Nr2f1 protein_coding processed_transcript MGP_AJ_T0037181.1 MGP_AJ_G0020571.1 mouse_genomes_project 13 53831473 53834212 + MGP_AJ_P0037181 Gm10782 protein_coding protein_coding MGP_AJ_T0037286.1 MGP_AJ_G0020595.1 mouse_genomes_project 13 57193572 57199619 - MGP_AJ_P0037286 Spata31d1a protein_coding protein_coding MGP_AJ_T0002486.1 MGP_AJ_G0002395.1 mouse_genomes_project 13 16261205 16269408 + MGP_AJ_P0002486 Tcrg-C4 TR_C_gene TR_C_gene MGP_AJ_T0036729.1 MGP_AJ_G0020425.1 mouse_genomes_project 13 35374026 35399639 + MGP_AJ_P0036729 Snrnp48 protein_coding protein_coding MGP_AJ_T0036730.1 MGP_AJ_G0020425.1 mouse_genomes_project 13 35374038 35398898 + MGP_AJ_P0036730 Snrnp48 protein_coding protein_coding MGP_AJ_T0003501.1 MGP_AJ_G0003187.1 mouse_genomes_project 13 100728278 100729924 + 1700099I09Rik antisense antisense MGP_AJ_T0003502.1 MGP_AJ_G0003187.1 mouse_genomes_project 13 100728293 100729890 + 1700099I09Rik antisense antisense MGP_AJ_T0099473.1 MGP_AJ_G0037439.1 mouse_genomes_project 13 101602120 101602216 + Gm24870 snRNA snRNA MGP_AJ_T0037419.1 MGP_AJ_G0020658.1 mouse_genomes_project 13 64985520 65004668 - MGP_AJ_P0037419 Zfp595 protein_coding protein_coding MGP_AJ_T0037707.1 MGP_AJ_G0020759.1 mouse_genomes_project 13 88750480 88752594 + MGP_AJ_P0037707 Rps23 protein_coding protein_coding MGP_AJ_T0036637.1 MGP_AJ_G0020396.1 mouse_genomes_project 13 31004819 31015847 - MGP_AJ_P0036637 Serpinb6e protein_coding protein_coding MGP_AJ_T0036638.1 MGP_AJ_G0020396.1 mouse_genomes_project 13 31013441 31015847 - MGP_AJ_P0036638 Serpinb6e protein_coding protein_coding MGP_AJ_T0036387.1 MGP_AJ_G0020259.1 mouse_genomes_project 13 18696421 18696851 - MGP_AJ_P0036387 Hist1h4n protein_coding protein_coding MGP_AJ_T0037791.1 MGP_AJ_G0020787.1 mouse_genomes_project 13 92184334 92390413 + MGP_AJ_P0037791 Ap3b1 protein_coding protein_coding MGP_AJ_T0011350.1 MGP_AJ_G0009472.1 mouse_genomes_project 13 36083084 36083312 - Gm22035 misc_RNA misc_RNA MGP_AJ_T0036359.1 MGP_AJ_G0020238.1 mouse_genomes_project 13 18405656 18406643 - MGP_AJ_P0036359 protein_coding protein_coding MGP_AJ_T0037302.1 MGP_AJ_G0020607.1 mouse_genomes_project 13 58388833 58391309 - MGP_AJ_P0037302 Ctla2b protein_coding protein_coding MGP_AJ_T0037303.1 MGP_AJ_G0020607.1 mouse_genomes_project 13 58388833 58391309 - MGP_AJ_P0037303 Ctla2b protein_coding protein_coding MGP_AJ_T0036634.1 MGP_AJ_G0020393.1 mouse_genomes_project 13 30674980 30692647 + MGP_AJ_P0036634 protein_coding protein_coding MGP_AJ_T0012911.1 MGP_AJ_G0011006.1 mouse_genomes_project 13 24386010 24386351 + processed_pseudogene processed_pseudogene MGP_AJ_T0100717.1 MGP_AJ_G0038683.1 mouse_genomes_project 13 15832027 15832161 + Gm26172 snoRNA snoRNA MGP_AJ_T0011352.1 MGP_AJ_G0009474.1 mouse_genomes_project 13 42468736 42469079 - Gm23755 misc_RNA misc_RNA MGP_AJ_T0037318.1 MGP_AJ_G0020621.1 mouse_genomes_project 13 60538675 60561799 - MGP_AJ_P0037318 Fbp1 protein_coding protein_coding MGP_AJ_T0037319.1 MGP_AJ_G0020621.1 mouse_genomes_project 13 60538688 60546635 - MGP_AJ_P0037319 Fbp1 protein_coding protein_coding MGP_AJ_T0037320.1 MGP_AJ_G0020621.1 mouse_genomes_project 13 60546595 60561645 - MGP_AJ_P0037320 Fbp1 protein_coding nonsense_mediated_decay MGP_AJ_T0037746.1 MGP_AJ_G0020768.1 mouse_genomes_project 13 90194563 90229588 + MGP_AJ_P0037746 Dhfr protein_coding protein_coding MGP_AJ_T0036831.1 MGP_AJ_G0020468.1 mouse_genomes_project 13 43870029 43878972 + MGP_AJ_P0036831 Fam8a1 protein_coding protein_coding MGP_AJ_T0036832.1 MGP_AJ_G0020468.1 mouse_genomes_project 13 43871569 43874193 + Fam8a1 protein_coding retained_intron MGP_AJ_T0037592.1 MGP_AJ_G0020739.1 mouse_genomes_project 13 75910482 75911876 + MGP_AJ_P0037592 Pou5f2 protein_coding protein_coding MGP_AJ_T0036418.1 MGP_AJ_G0020281.1 mouse_genomes_project 13 19437699 19438608 - MGP_AJ_P0036418 Vmn1r202 protein_coding protein_coding MGP_AJ_T0003450.1 MGP_AJ_G0003161.1 mouse_genomes_project 13 46119539 46123888 + Phf2os1 antisense antisense MGP_AJ_T0000891.1 MGP_AJ_G0000825.1 mouse_genomes_project 13 88458828 88459241 + TEC TEC MGP_AJ_T0036417.1 MGP_AJ_G0020280.1 mouse_genomes_project 13 19403507 19404410 + MGP_AJ_P0036417 Vmn1r201 protein_coding protein_coding MGP_AJ_T0098576.1 MGP_AJ_G0036560.1 mouse_genomes_project 13 50391694 50391806 - n-R5s54 rRNA rRNA MGP_AJ_T0036603.1 MGP_AJ_G0020374.1 mouse_genomes_project 13 28119556 28121329 + MGP_AJ_P0036603 Gm5447 protein_coding protein_coding MGP_AJ_T0037557.1 MGP_AJ_G0020725.1 mouse_genomes_project 13 72619409 72695275 - MGP_AJ_P0037557 Cast protein_coding unknown_likely_coding MGP_AJ_T0037558.1 MGP_AJ_G0020725.1 mouse_genomes_project 13 72619934 72729358 - MGP_AJ_P0037558 Cast protein_coding protein_coding MGP_AJ_T0036575.1 MGP_AJ_G0020364.1 mouse_genomes_project 13 26123966 26128747 - MGP_AJ_P0036575 Sox4 protein_coding protein_coding MGP_AJ_T0037285.1 MGP_AJ_G0020594.1 mouse_genomes_project 13 57180710 57187591 - MGP_AJ_P0037285 4921517D22Rik protein_coding protein_coding MGP_AJ_T0036606.1 MGP_AJ_G0020377.1 mouse_genomes_project 13 28757342 28762936 + MGP_AJ_P0036606 Foxf2 protein_coding protein_coding MGP_AJ_T0102291.1 MGP_AJ_G0040033.1 mouse_genomes_project 13 19430798 19431163 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0037288.1 MGP_AJ_G0020597.1 mouse_genomes_project 13 57220275 57226103 - MGP_AJ_P0037288 Spata31d1d protein_coding protein_coding MGP_AJ_T0102286.1 MGP_AJ_G0040028.1 mouse_genomes_project 13 19308213 19309099 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0036439.1 MGP_AJ_G0020299.1 mouse_genomes_project 13 20493516 20502479 - MGP_AJ_P0036439 Btn1a1 protein_coding protein_coding MGP_AJ_T0036440.1 MGP_AJ_G0020299.1 mouse_genomes_project 13 20500351 20502505 - MGP_AJ_P0036440 Btn1a1 protein_coding protein_coding MGP_AJ_T0037870.1 MGP_AJ_G0020813.1 mouse_genomes_project 13 95038630 95060008 - MGP_AJ_P0037870 Hexb protein_coding protein_coding MGP_AJ_T0036827.1 MGP_AJ_G0020465.1 mouse_genomes_project 13 43473781 43500987 + MGP_AJ_P0036827 Stmnd1 protein_coding protein_coding MGP_AJ_T0006630.1 MGP_AJ_G0005482.1 mouse_genomes_project 13 95589183 95603999 - 5330416C01Rik lincRNA lincRNA MGP_AJ_T0006631.1 MGP_AJ_G0005482.1 mouse_genomes_project 13 95591036 95599721 - 5330416C01Rik lincRNA lincRNA MGP_AJ_T0006632.1 MGP_AJ_G0005482.1 mouse_genomes_project 13 95601282 95603967 - 5330416C01Rik lincRNA lincRNA MGP_AJ_T0037115.1 MGP_AJ_G0020546.1 mouse_genomes_project 13 52792311 52812015 - MGP_AJ_P0037115 Lman2 protein_coding protein_coding MGP_AJ_T0100720.1 MGP_AJ_G0038686.1 mouse_genomes_project 13 21896292 21896532 - Gm22358 snoRNA snoRNA MGP_AJ_T0099475.1 MGP_AJ_G0037441.1 mouse_genomes_project 13 108260591 108260749 + Gm25052 snRNA snRNA MGP_AJ_T0036381.1 MGP_AJ_G0020256.1 mouse_genomes_project 13 18645220 18646973 + MGP_AJ_P0036381 Hist1h2bp protein_coding protein_coding MGP_AJ_T0036386.1 MGP_AJ_G0020256.1 mouse_genomes_project 13 18645267 18645736 + MGP_AJ_P0036386 Hist1h2bp protein_coding protein_coding MGP_AJ_T0102319.1 MGP_AJ_G0040061.1 mouse_genomes_project 13 30730476 30742402 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0038151.1 MGP_AJ_G0020897.1 mouse_genomes_project 13 111023341 111026949 - MGP_AJ_P0038151 Gpx8 protein_coding protein_coding MGP_AJ_T0036752.1 MGP_AJ_G0020436.1 mouse_genomes_project 13 38173736 38180099 + MGP_AJ_P0036752 Tmem14c protein_coding protein_coding MGP_AJ_T0037823.1 MGP_AJ_G0020799.1 mouse_genomes_project 13 93535727 93541386 + MGP_AJ_P0037823 F2rl2 protein_coding protein_coding MGP_AJ_T0036725.1 MGP_AJ_G0020423.1 mouse_genomes_project 13 35209215 35233727 + MGP_AJ_P0036725 Riok1 protein_coding protein_coding MGP_AJ_T0098574.1 MGP_AJ_G0036558.1 mouse_genomes_project 13 20729639 20729747 - Gm24991 rRNA rRNA MGP_AJ_T0036612.1 MGP_AJ_G0020380.1 mouse_genomes_project 13 29863055 29945313 - MGP_AJ_P0036612 Mylk4 protein_coding protein_coding MGP_AJ_T0036613.1 MGP_AJ_G0020380.1 mouse_genomes_project 13 29866726 29945250 - MGP_AJ_P0036613 Mylk4 protein_coding protein_coding MGP_AJ_T0036614.1 MGP_AJ_G0020380.1 mouse_genomes_project 13 29870935 29900705 - MGP_AJ_P0036614 Mylk4 protein_coding unknown_likely_coding MGP_AJ_T0036615.1 MGP_AJ_G0020380.1 mouse_genomes_project 13 29930067 29947488 - Mylk4 protein_coding processed_transcript MGP_AJ_T0036897.1 MGP_AJ_G0020487.1 mouse_genomes_project 13 46514176 46561850 - MGP_AJ_P0036897 Fgd3 protein_coding protein_coding MGP_AJ_T0036898.1 MGP_AJ_G0020487.1 mouse_genomes_project 13 46515732 46551626 - MGP_AJ_P0036898 Fgd3 protein_coding protein_coding MGP_AJ_T0036899.1 MGP_AJ_G0020487.1 mouse_genomes_project 13 46526000 46572873 - MGP_AJ_P0036899 Fgd3 protein_coding protein_coding MGP_AJ_T0038029.1 MGP_AJ_G0020861.1 mouse_genomes_project 13 102749421 102796500 + Srek1ip1 protein_coding processed_transcript MGP_AJ_T0038031.1 MGP_AJ_G0020861.1 mouse_genomes_project 13 102774302 102797414 + MGP_AJ_P0038031 Srek1ip1 protein_coding protein_coding MGP_AJ_T0038032.1 MGP_AJ_G0020861.1 mouse_genomes_project 13 102774364 102796809 + MGP_AJ_P0038032 Srek1ip1 protein_coding nonsense_mediated_decay MGP_AJ_T0038033.1 MGP_AJ_G0020861.1 mouse_genomes_project 13 102784002 102792295 + Srek1ip1 protein_coding retained_intron MGP_AJ_T0038034.1 MGP_AJ_G0020861.1 mouse_genomes_project 13 102792071 102797411 + Srek1ip1 protein_coding retained_intron MGP_AJ_T0036461.1 MGP_AJ_G0020314.1 mouse_genomes_project 13 20813842 20814383 - MGP_AJ_P0036461 Hist1h4a protein_coding protein_coding MGP_AJ_T0099457.1 MGP_AJ_G0037423.1 mouse_genomes_project 13 40590475 40590584 - Gm26064 snRNA snRNA MGP_AJ_T0037466.1 MGP_AJ_G0020686.1 mouse_genomes_project 13 66409710 66783592 - MGP_AJ_P0037466 Adcy2 protein_coding protein_coding MGP_AJ_T0098572.1 MGP_AJ_G0036556.1 mouse_genomes_project 13 242305 242419 + Gm23084 rRNA rRNA MGP_AJ_T0036910.1 MGP_AJ_G0020495.1 mouse_genomes_project 13 46922336 46950046 + MGP_AJ_P0036910 Nol8 protein_coding protein_coding MGP_AJ_T0036373.1 MGP_AJ_G0020248.1 mouse_genomes_project 13 18591690 18593234 + MGP_AJ_P0036373 Hist1h4j protein_coding protein_coding MGP_AJ_T0099443.1 MGP_AJ_G0037409.1 mouse_genomes_project 13 14063436 14063543 + Gm25020 snRNA snRNA MGP_AJ_T0037426.1 MGP_AJ_G0020664.1 mouse_genomes_project 13 65076654 65085628 - MGP_AJ_P0037426 protein_coding protein_coding MGP_AJ_T0102309.1 MGP_AJ_G0040051.1 mouse_genomes_project 13 20221229 20221690 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0037392.1 MGP_AJ_G0020646.1 mouse_genomes_project 13 64563899 64567631 + MGP_AJ_P0037392 protein_coding protein_coding MGP_AJ_T0006589.1 MGP_AJ_G0005453.1 mouse_genomes_project 13 52313509 52314053 + Gm29431 lincRNA lincRNA MGP_AJ_T0037908.1 MGP_AJ_G0020833.1 mouse_genomes_project 13 97916028 98013607 - MGP_AJ_P0037908 Bdp1 protein_coding protein_coding MGP_AJ_T0037909.1 MGP_AJ_G0020833.1 mouse_genomes_project 13 97916030 97954212 - MGP_AJ_P0037909 Bdp1 protein_coding nonsense_mediated_decay MGP_AJ_T0037910.1 MGP_AJ_G0020833.1 mouse_genomes_project 13 97921336 98013375 - MGP_AJ_P0037910 Bdp1 protein_coding protein_coding MGP_AJ_T0037911.1 MGP_AJ_G0020833.1 mouse_genomes_project 13 97941396 97944829 - Bdp1 protein_coding retained_intron MGP_AJ_T0037912.1 MGP_AJ_G0020833.1 mouse_genomes_project 13 97959402 97964449 - Bdp1 protein_coding retained_intron MGP_AJ_T0037913.1 MGP_AJ_G0020833.1 mouse_genomes_project 13 97988240 98008075 - MGP_AJ_P0037913 Bdp1 protein_coding nonsense_mediated_decay MGP_AJ_T0037914.1 MGP_AJ_G0020833.1 mouse_genomes_project 13 98007037 98013414 - MGP_AJ_P0037914 Bdp1 protein_coding nonsense_mediated_decay MGP_AJ_T0037518.1 MGP_AJ_G0020707.1 mouse_genomes_project 13 71586001 71641440 + MGP_AJ_P0037518 Slc12a7 protein_coding protein_coding MGP_AJ_T0102296.1 MGP_AJ_G0040038.1 mouse_genomes_project 13 19702231 19703819 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0036774.1 MGP_AJ_G0020449.1 mouse_genomes_project 13 39850725 40313366 + MGP_AJ_P0036774 Phactr1 protein_coding protein_coding MGP_AJ_T0036775.1 MGP_AJ_G0020449.1 mouse_genomes_project 13 39850901 40130223 + Phactr1 protein_coding retained_intron MGP_AJ_T0036776.1 MGP_AJ_G0020449.1 mouse_genomes_project 13 39851615 40310086 + MGP_AJ_P0036776 Phactr1 protein_coding protein_coding MGP_AJ_T0036777.1 MGP_AJ_G0020449.1 mouse_genomes_project 13 39852800 40310030 + MGP_AJ_P0036777 Phactr1 protein_coding protein_coding MGP_AJ_T0036778.1 MGP_AJ_G0020449.1 mouse_genomes_project 13 39880035 40310238 + MGP_AJ_P0036778 Phactr1 protein_coding protein_coding MGP_AJ_T0036779.1 MGP_AJ_G0020449.1 mouse_genomes_project 13 39880073 40313368 + MGP_AJ_P0036779 Phactr1 protein_coding protein_coding MGP_AJ_T0036780.1 MGP_AJ_G0020449.1 mouse_genomes_project 13 40035922 40310145 + MGP_AJ_P0036780 Phactr1 protein_coding protein_coding MGP_AJ_T0036781.1 MGP_AJ_G0020449.1 mouse_genomes_project 13 40036509 40128001 + Phactr1 protein_coding processed_transcript MGP_AJ_T0036782.1 MGP_AJ_G0020449.1 mouse_genomes_project 13 40286616 40310220 + Phactr1 protein_coding processed_transcript MGP_AJ_T0036783.1 MGP_AJ_G0020449.1 mouse_genomes_project 13 40297262 40310248 + Phactr1 protein_coding processed_transcript MGP_AJ_T0036784.1 MGP_AJ_G0020449.1 mouse_genomes_project 13 40297277 40310196 + Phactr1 protein_coding processed_transcript MGP_AJ_T0036785.1 MGP_AJ_G0020449.1 mouse_genomes_project 13 40300259 40310090 + Phactr1 protein_coding processed_transcript MGP_AJ_T0036786.1 MGP_AJ_G0020449.1 mouse_genomes_project 13 40300259 40310090 + Phactr1 protein_coding processed_transcript MGP_AJ_T0036787.1 MGP_AJ_G0020449.1 mouse_genomes_project 13 40300291 40310090 + Phactr1 protein_coding processed_transcript MGP_AJ_T0036788.1 MGP_AJ_G0020449.1 mouse_genomes_project 13 40307844 40309088 + Phactr1 protein_coding processed_transcript MGP_AJ_T0036789.1 MGP_AJ_G0020449.1 mouse_genomes_project 13 40310220 40313354 + Phactr1 protein_coding processed_transcript MGP_AJ_T0099456.1 MGP_AJ_G0037422.1 mouse_genomes_project 13 39068348 39068452 + Gm22157 snRNA snRNA MGP_AJ_T0098401.1 MGP_AJ_G0036385.1 mouse_genomes_project 13 107622438 107622835 + pseudogene pseudogene MGP_AJ_T0102292.1 MGP_AJ_G0040034.1 mouse_genomes_project 13 19562962 19563687 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0037189.1 MGP_AJ_G0020576.1 mouse_genomes_project 13 54081294 54110861 + MGP_AJ_P0037189 Tgfbi protein_coding protein_coding MGP_AJ_T0037428.1 MGP_AJ_G0020665.1 mouse_genomes_project 13 65091399 65109126 - MGP_AJ_P0037428 Zfp459 protein_coding protein_coding MGP_AJ_T0098790.1 MGP_AJ_G0036774.1 mouse_genomes_project 13 30759515 30759727 + Gm25043 ribozyme ribozyme MGP_AJ_T0036987.1 MGP_AJ_G0020516.1 mouse_genomes_project 13 50894322 50900472 - MGP_AJ_P0036987 Msx2 protein_coding protein_coding MGP_AJ_T0036988.1 MGP_AJ_G0020516.1 mouse_genomes_project 13 50898903 50900472 - Msx2 protein_coding retained_intron MGP_AJ_T0037762.1 MGP_AJ_G0020778.1 mouse_genomes_project 13 91124134 91206655 + MGP_AJ_P0037762 Homer1 protein_coding protein_coding MGP_AJ_T0037763.1 MGP_AJ_G0020778.1 mouse_genomes_project 13 91124479 91187048 + MGP_AJ_P0037763 Homer1 protein_coding protein_coding MGP_AJ_T0037764.1 MGP_AJ_G0020778.1 mouse_genomes_project 13 91124872 91180364 + MGP_AJ_P0037764 Homer1 protein_coding protein_coding MGP_AJ_T0037765.1 MGP_AJ_G0020778.1 mouse_genomes_project 13 91125180 91223588 + MGP_AJ_P0037765 Homer1 protein_coding protein_coding MGP_AJ_T0037766.1 MGP_AJ_G0020778.1 mouse_genomes_project 13 91125484 91222177 + MGP_AJ_P0037766 Homer1 protein_coding protein_coding MGP_AJ_T0037767.1 MGP_AJ_G0020778.1 mouse_genomes_project 13 91125484 91222177 + MGP_AJ_P0037767 Homer1 protein_coding protein_coding MGP_AJ_T0037768.1 MGP_AJ_G0020778.1 mouse_genomes_project 13 91125540 91223697 + MGP_AJ_P0037768 Homer1 protein_coding protein_coding MGP_AJ_T0037769.1 MGP_AJ_G0020778.1 mouse_genomes_project 13 91125565 91186320 + MGP_AJ_P0037769 Homer1 protein_coding protein_coding MGP_AJ_T0037770.1 MGP_AJ_G0020778.1 mouse_genomes_project 13 91125659 91222213 + MGP_AJ_P0037770 Homer1 protein_coding protein_coding MGP_AJ_T0037771.1 MGP_AJ_G0020778.1 mouse_genomes_project 13 91125659 91222213 + MGP_AJ_P0037771 Homer1 protein_coding protein_coding MGP_AJ_T0037772.1 MGP_AJ_G0020778.1 mouse_genomes_project 13 91128414 91224036 + MGP_AJ_P0037772 Homer1 protein_coding protein_coding MGP_AJ_T0037773.1 MGP_AJ_G0020778.1 mouse_genomes_project 13 91203294 91222136 + MGP_AJ_P0037773 Homer1 protein_coding unknown_likely_coding MGP_AJ_T0037377.1 MGP_AJ_G0020637.1 mouse_genomes_project 13 62675370 62680291 + MGP_AJ_P0037377 Spata31d1c protein_coding protein_coding MGP_AJ_T0009910.1 MGP_AJ_G0008032.1 mouse_genomes_project 13 2423796 2423885 - Gm26043 miRNA miRNA MGP_AJ_T0037460.1 MGP_AJ_G0020681.1 mouse_genomes_project 13 65599932 65607916 + MGP_AJ_P0037460 Gm10037 protein_coding protein_coding MGP_AJ_T0098397.1 MGP_AJ_G0036381.1 mouse_genomes_project 13 10300340 10300723 - pseudogene pseudogene MGP_AJ_T0006576.1 MGP_AJ_G0005447.1 mouse_genomes_project 13 45779063 45781363 - 6720427I07Rik lincRNA lincRNA MGP_AJ_T0036720.1 MGP_AJ_G0020421.1 mouse_genomes_project 13 35143682 35166690 - MGP_AJ_P0036720 Ssr1 protein_coding protein_coding MGP_AJ_T0012900.1 MGP_AJ_G0010995.1 mouse_genomes_project 13 21349757 21350169 - processed_pseudogene processed_pseudogene MGP_AJ_T0037032.1 MGP_AJ_G0020530.1 mouse_genomes_project 13 52105472 52114167 - MGP_AJ_P0037032 Rnf44 protein_coding protein_coding MGP_AJ_T0037033.1 MGP_AJ_G0020530.1 mouse_genomes_project 13 52105475 52119910 - MGP_AJ_P0037033 Rnf44 protein_coding protein_coding MGP_AJ_T0037034.1 MGP_AJ_G0020530.1 mouse_genomes_project 13 52105481 52119977 - MGP_AJ_P0037034 Rnf44 protein_coding protein_coding MGP_AJ_T0037035.1 MGP_AJ_G0020530.1 mouse_genomes_project 13 52105485 52114261 - MGP_AJ_P0037035 Rnf44 protein_coding protein_coding MGP_AJ_T0037036.1 MGP_AJ_G0020530.1 mouse_genomes_project 13 52108718 52110144 - Rnf44 protein_coding retained_intron MGP_AJ_T0037037.1 MGP_AJ_G0020530.1 mouse_genomes_project 13 52109123 52119916 - MGP_AJ_P0037037 Rnf44 protein_coding protein_coding MGP_AJ_T0037038.1 MGP_AJ_G0020530.1 mouse_genomes_project 13 52109199 52113727 - MGP_AJ_P0037038 Rnf44 protein_coding protein_coding MGP_AJ_T0037039.1 MGP_AJ_G0020530.1 mouse_genomes_project 13 52109556 52110479 - Rnf44 protein_coding retained_intron MGP_AJ_T0037040.1 MGP_AJ_G0020530.1 mouse_genomes_project 13 52109681 52114273 - MGP_AJ_P0037040 Rnf44 protein_coding protein_coding MGP_AJ_T0037041.1 MGP_AJ_G0020530.1 mouse_genomes_project 13 52109777 52114330 - MGP_AJ_P0037041 Rnf44 protein_coding protein_coding MGP_AJ_T0037042.1 MGP_AJ_G0020530.1 mouse_genomes_project 13 52110035 52119882 - MGP_AJ_P0037042 Rnf44 protein_coding protein_coding MGP_AJ_T0037043.1 MGP_AJ_G0020530.1 mouse_genomes_project 13 52110101 52113325 - Rnf44 protein_coding processed_transcript MGP_AJ_T0037044.1 MGP_AJ_G0020530.1 mouse_genomes_project 13 52110112 52119920 - Rnf44 protein_coding processed_transcript MGP_AJ_T0037045.1 MGP_AJ_G0020530.1 mouse_genomes_project 13 52110121 52114346 - MGP_AJ_P0037045 Rnf44 protein_coding protein_coding MGP_AJ_T0009961.1 MGP_AJ_G0008083.1 mouse_genomes_project 13 105772855 105773029 - Gm22118 miRNA miRNA MGP_AJ_T0000900.1 MGP_AJ_G0000834.1 mouse_genomes_project 13 110182778 110184129 + TEC TEC MGP_AJ_T0038178.1 MGP_AJ_G0020910.1 mouse_genomes_project 13 113063121 113064955 - MGP_AJ_P0038178 Pelo protein_coding protein_coding MGP_AJ_T0002498.1 MGP_AJ_G0002404.1 mouse_genomes_project 13 16146863 16146923 + MGP_AJ_P0002498 Trgj3 TR_J_gene TR_J_gene MGP_AJ_T0036629.1 MGP_AJ_G0020389.1 mouse_genomes_project 13 30305563 30316466 - MGP_AJ_P0036629 Serpinb9c protein_coding protein_coding MGP_AJ_T0036630.1 MGP_AJ_G0020389.1 mouse_genomes_project 13 30313189 30315219 - MGP_AJ_P0036630 Serpinb9c protein_coding protein_coding MGP_AJ_T0036567.1 MGP_AJ_G0020358.1 mouse_genomes_project 13 24951095 24976069 + MGP_AJ_P0036567 Prl2c1 protein_coding protein_coding MGP_AJ_T0036568.1 MGP_AJ_G0020358.1 mouse_genomes_project 13 24951098 24975984 + MGP_AJ_P0036568 Prl2c1 protein_coding protein_coding MGP_AJ_T0036569.1 MGP_AJ_G0020358.1 mouse_genomes_project 13 24951145 24975980 + MGP_AJ_P0036569 Prl2c1 protein_coding protein_coding MGP_AJ_T0009947.1 MGP_AJ_G0008069.1 mouse_genomes_project 13 60959457 60959542 - Mir3074-1 miRNA miRNA MGP_AJ_T0036726.1 MGP_AJ_G0020424.1 mouse_genomes_project 13 35320162 35367890 + MGP_AJ_P0036726 Dsp protein_coding protein_coding MGP_AJ_T0036727.1 MGP_AJ_G0020424.1 mouse_genomes_project 13 35320182 35367890 + MGP_AJ_P0036727 Dsp protein_coding protein_coding MGP_AJ_T0036728.1 MGP_AJ_G0020424.1 mouse_genomes_project 13 35347689 35351556 + Dsp protein_coding processed_transcript MGP_AJ_T0037970.1 MGP_AJ_G0020847.1 mouse_genomes_project 13 98751734 98783768 - MGP_AJ_P0037970 Slc30a5 protein_coding protein_coding MGP_AJ_T0000876.1 MGP_AJ_G0000810.1 mouse_genomes_project 13 36432291 36432654 + TEC TEC MGP_AJ_T0012905.1 MGP_AJ_G0011000.1 mouse_genomes_project 13 22678577 22679693 - processed_pseudogene processed_pseudogene MGP_AJ_T0036121.1 MGP_AJ_G0020158.1 mouse_genomes_project 13 630249 661194 + MGP_AJ_P0036121 Akr1c14 protein_coding protein_coding MGP_AJ_T0036122.1 MGP_AJ_G0020158.1 mouse_genomes_project 13 640802 661185 + MGP_AJ_P0036122 Akr1c14 protein_coding protein_coding MGP_AJ_T0036123.1 MGP_AJ_G0020158.1 mouse_genomes_project 13 648968 659768 + Akr1c14 protein_coding processed_transcript MGP_AJ_T0006526.1 MGP_AJ_G0005411.1 mouse_genomes_project 13 21395171 21396245 - Gm11342 lincRNA lincRNA MGP_AJ_T0009918.1 MGP_AJ_G0008040.1 mouse_genomes_project 13 18697747 20798584 + miRNA miRNA MGP_AJ_T0037531.1 MGP_AJ_G0020714.1 mouse_genomes_project 13 71862377 71889096 - MGP_AJ_P0037531 Cep72 protein_coding protein_coding MGP_AJ_T0012961.1 MGP_AJ_G0011056.1 mouse_genomes_project 13 95326269 95327111 - processed_pseudogene processed_pseudogene MGP_AJ_T0038061.1 MGP_AJ_G0020872.1 mouse_genomes_project 13 105997150 106106287 - MGP_AJ_P0038061 Ndufaf2 protein_coding protein_coding MGP_AJ_T0037570.1 MGP_AJ_G0020732.1 mouse_genomes_project 13 73991859 73994052 - MGP_AJ_P0037570 Gpr150 protein_coding protein_coding MGP_AJ_T0006624.1 MGP_AJ_G0005478.1 mouse_genomes_project 13 91963935 91966606 - Gm15907 lincRNA lincRNA MGP_AJ_T0036595.1 MGP_AJ_G0020370.1 mouse_genomes_project 13 27802792 27853904 + MGP_AJ_P0036595 Dusp22 protein_coding protein_coding MGP_AJ_T0036596.1 MGP_AJ_G0020370.1 mouse_genomes_project 13 27802854 27848770 + MGP_AJ_P0036596 Dusp22 protein_coding protein_coding MGP_AJ_T0036597.1 MGP_AJ_G0020370.1 mouse_genomes_project 13 27802903 27851541 + MGP_AJ_P0036597 Dusp22 protein_coding protein_coding MGP_AJ_T0037159.1 MGP_AJ_G0020561.1 mouse_genomes_project 13 53095438 53141726 + MGP_AJ_P0037159 Ddx46 protein_coding protein_coding MGP_AJ_T0037160.1 MGP_AJ_G0020561.1 mouse_genomes_project 13 53095438 53141726 + MGP_AJ_P0037160 Ddx46 protein_coding protein_coding MGP_AJ_T0037161.1 MGP_AJ_G0020561.1 mouse_genomes_project 13 53121189 53141734 + MGP_AJ_P0037161 Ddx46 protein_coding unknown_likely_coding MGP_AJ_T0012919.1 MGP_AJ_G0011014.1 mouse_genomes_project 13 28158154 28158778 + processed_pseudogene processed_pseudogene MGP_AJ_T0036853.1 MGP_AJ_G0020474.1 mouse_genomes_project 13 44292027 44305697 - Dek protein_coding processed_transcript MGP_AJ_T0036854.1 MGP_AJ_G0020474.1 mouse_genomes_project 13 44292034 44313553 - MGP_AJ_P0036854 Dek protein_coding protein_coding MGP_AJ_T0036855.1 MGP_AJ_G0020474.1 mouse_genomes_project 13 44295849 44313564 - MGP_AJ_P0036855 Dek protein_coding protein_coding MGP_AJ_T0036856.1 MGP_AJ_G0020474.1 mouse_genomes_project 13 44305413 44313193 - MGP_AJ_P0036856 Dek protein_coding protein_coding MGP_AJ_T0036857.1 MGP_AJ_G0020474.1 mouse_genomes_project 13 44308853 44313517 - Dek protein_coding processed_transcript MGP_AJ_T0036858.1 MGP_AJ_G0020474.1 mouse_genomes_project 13 44312748 44313546 - Dek protein_coding processed_transcript MGP_AJ_T0102320.1 MGP_AJ_G0040062.1 mouse_genomes_project 13 30844600 30844759 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0098396.1 MGP_AJ_G0036380.1 mouse_genomes_project 13 425394 426009 + pseudogene pseudogene MGP_AJ_T0036631.1 MGP_AJ_G0020390.1 mouse_genomes_project 13 30363680 30373845 + MGP_AJ_P0036631 Serpinb9d protein_coding protein_coding MGP_AJ_T0037049.1 MGP_AJ_G0020533.1 mouse_genomes_project 13 52184958 52192696 - MGP_AJ_P0037049 Sncb protein_coding protein_coding MGP_AJ_T0037050.1 MGP_AJ_G0020533.1 mouse_genomes_project 13 52185478 52192198 - MGP_AJ_P0037050 Sncb protein_coding protein_coding MGP_AJ_T0037051.1 MGP_AJ_G0020533.1 mouse_genomes_project 13 52185525 52189163 - Sncb protein_coding retained_intron MGP_AJ_T0037052.1 MGP_AJ_G0020533.1 mouse_genomes_project 13 52191154 52192593 - Sncb protein_coding retained_intron MGP_AJ_T0009922.1 MGP_AJ_G0008044.1 mouse_genomes_project 13 20555829 20556061 + miRNA miRNA MGP_AJ_T0037431.1 MGP_AJ_G0020668.1 mouse_genomes_project 13 65190520 65200844 - MGP_AJ_P0037431 Zfp58 protein_coding protein_coding MGP_AJ_T0037432.1 MGP_AJ_G0020668.1 mouse_genomes_project 13 65190521 65200896 - MGP_AJ_P0037432 Zfp58 protein_coding protein_coding MGP_AJ_T0037434.1 MGP_AJ_G0020668.1 mouse_genomes_project 13 65192001 65200828 - MGP_AJ_P0037434 Zfp58 protein_coding protein_coding MGP_AJ_T0037435.1 MGP_AJ_G0020668.1 mouse_genomes_project 13 65192216 65200785 - MGP_AJ_P0037435 Zfp58 protein_coding protein_coding MGP_AJ_T0006532.1 MGP_AJ_G0005416.1 mouse_genomes_project 13 24372929 24385331 + 4930511O05Rik lincRNA lincRNA MGP_AJ_T0037947.1 MGP_AJ_G0020840.1 mouse_genomes_project 13 98557195 98591331 - MGP_AJ_P0037947 Rad17 protein_coding protein_coding MGP_AJ_T0037948.1 MGP_AJ_G0020840.1 mouse_genomes_project 13 98557195 98591331 - MGP_AJ_P0037948 Rad17 protein_coding protein_coding MGP_AJ_T0036545.1 MGP_AJ_G0020345.1 mouse_genomes_project 13 24347416 24359100 + MGP_AJ_P0036545 Prl3a1 protein_coding protein_coding MGP_AJ_T0009959.1 MGP_AJ_G0008081.1 mouse_genomes_project 13 94201059 94201172 + Gm25213 miRNA miRNA MGP_AJ_T0037314.1 MGP_AJ_G0020617.1 mouse_genomes_project 13 59147408 59153012 - MGP_AJ_P0037314 Cts3 protein_coding protein_coding MGP_AJ_T0036446.1 MGP_AJ_G0020303.1 mouse_genomes_project 13 20590317 20591133 - MGP_AJ_P0036446 Hist1h4f protein_coding protein_coding MGP_AJ_T0006602.1 MGP_AJ_G0005463.1 mouse_genomes_project 13 66917185 66920500 + Gm26844 lincRNA lincRNA MGP_AJ_T0037903.1 MGP_AJ_G0020829.1 mouse_genomes_project 13 97250888 97321316 + MGP_AJ_P0037903 Mrps27 protein_coding protein_coding MGP_AJ_T0037904.1 MGP_AJ_G0020829.1 mouse_genomes_project 13 97250904 97321325 + MGP_AJ_P0037904 Mrps27 protein_coding unknown_likely_coding MGP_AJ_T0003483.1 MGP_AJ_G0003178.1 mouse_genomes_project 13 82123970 82126565 - A230107N01Rik antisense antisense MGP_AJ_T0003484.1 MGP_AJ_G0003178.1 mouse_genomes_project 13 82124999 82126490 - A230107N01Rik antisense antisense MGP_AJ_T0036939.1 MGP_AJ_G0020504.1 mouse_genomes_project 13 48843956 48980024 - MGP_AJ_P0036939 Shc3 protein_coding protein_coding MGP_AJ_T0036376.1 MGP_AJ_G0020251.1 mouse_genomes_project 13 18611866 18612913 - MGP_AJ_P0036376 Hist1h2ak protein_coding protein_coding MGP_AJ_T0037299.1 MGP_AJ_G0020604.1 mouse_genomes_project 13 58293773 58298230 - MGP_AJ_P0037299 BC051665 protein_coding protein_coding MGP_AJ_T0036518.1 MGP_AJ_G0020332.1 mouse_genomes_project 13 21930975 21988953 + MGP_AJ_P0036518 D130043K22Rik protein_coding protein_coding MGP_AJ_T0036519.1 MGP_AJ_G0020332.1 mouse_genomes_project 13 21930975 21988946 + MGP_AJ_P0036519 D130043K22Rik protein_coding nonsense_mediated_decay MGP_AJ_T0036520.1 MGP_AJ_G0020332.1 mouse_genomes_project 13 21940449 21989837 + MGP_AJ_P0036520 D130043K22Rik protein_coding unknown_likely_coding MGP_AJ_T0036521.1 MGP_AJ_G0020332.1 mouse_genomes_project 13 21967541 21969676 + D130043K22Rik protein_coding processed_transcript MGP_AJ_T0036522.1 MGP_AJ_G0020332.1 mouse_genomes_project 13 21979949 21987531 + D130043K22Rik protein_coding processed_transcript MGP_AJ_T0038135.1 MGP_AJ_G0020887.1 mouse_genomes_project 13 110490039 110549684 - MGP_AJ_P0038135 Il31ra protein_coding protein_coding MGP_AJ_T0037375.1 MGP_AJ_G0020635.1 mouse_genomes_project 13 62411086 62568137 - MGP_AJ_P0037375 Cntnap3 protein_coding protein_coding MGP_AJ_T0037548.1 MGP_AJ_G0020720.1 mouse_genomes_project 13 72178818 72194353 + MGP_AJ_P0037548 Ccdc127 protein_coding protein_coding MGP_AJ_T0037549.1 MGP_AJ_G0020720.1 mouse_genomes_project 13 72178826 72191271 + MGP_AJ_P0037549 Ccdc127 protein_coding protein_coding MGP_AJ_T0037550.1 MGP_AJ_G0020720.1 mouse_genomes_project 13 72178853 72189655 + MGP_AJ_P0037550 Ccdc127 protein_coding protein_coding MGP_AJ_T0037551.1 MGP_AJ_G0020720.1 mouse_genomes_project 13 72178854 72189265 + MGP_AJ_P0037551 Ccdc127 protein_coding nonsense_mediated_decay MGP_AJ_T0037552.1 MGP_AJ_G0020720.1 mouse_genomes_project 13 72178874 72185619 + MGP_AJ_P0037552 Ccdc127 protein_coding protein_coding MGP_AJ_T0100737.1 MGP_AJ_G0038703.1 mouse_genomes_project 13 73629340 73629423 + Gm23012 snoRNA snoRNA MGP_AJ_T0038145.1 MGP_AJ_G0020895.1 mouse_genomes_project 13 111015751 111018955 + MGP_AJ_P0038145 Cdc20b protein_coding protein_coding MGP_AJ_T0038146.1 MGP_AJ_G0020895.1 mouse_genomes_project 13 111016018 111074731 + MGP_AJ_P0038146 Cdc20b protein_coding protein_coding MGP_AJ_T0038147.1 MGP_AJ_G0020895.1 mouse_genomes_project 13 111016018 111074731 + MGP_AJ_P0038147 Cdc20b protein_coding protein_coding MGP_AJ_T0038148.1 MGP_AJ_G0020895.1 mouse_genomes_project 13 111016018 111074731 + MGP_AJ_P0038148 Cdc20b protein_coding protein_coding MGP_AJ_T0038149.1 MGP_AJ_G0020895.1 mouse_genomes_project 13 111016026 111018955 + MGP_AJ_P0038149 Cdc20b protein_coding protein_coding MGP_AJ_T0099444.1 MGP_AJ_G0037410.1 mouse_genomes_project 13 14689843 14690067 - Gm24018 snRNA snRNA MGP_AJ_T0003485.1 MGP_AJ_G0003179.1 mouse_genomes_project 13 89556970 89590139 - 4833422C13Rik antisense antisense MGP_AJ_T0003486.1 MGP_AJ_G0003179.1 mouse_genomes_project 13 89563212 89590043 - 4833422C13Rik antisense antisense MGP_AJ_T0003487.1 MGP_AJ_G0003179.1 mouse_genomes_project 13 89568641 89590095 - 4833422C13Rik antisense antisense MGP_AJ_T0000899.1 MGP_AJ_G0000833.1 mouse_genomes_project 13 100069666 100071600 - TEC TEC MGP_AJ_T0017358.1 MGP_AJ_G0015230.1 mouse_genomes_project 13 38115588 38158814 - A730081D07Rik processed_transcript processed_transcript MGP_AJ_T0012910.1 MGP_AJ_G0011005.1 mouse_genomes_project 13 23974298 23974604 - processed_pseudogene processed_pseudogene MGP_AJ_T0006548.1 MGP_AJ_G0005427.1 mouse_genomes_project 13 28699338 28708176 + Gm11377 lincRNA lincRNA MGP_AJ_T0011346.1 MGP_AJ_G0009468.1 mouse_genomes_project 13 10241835 10242099 + Gm24065 misc_RNA misc_RNA MGP_AJ_T0037409.1 MGP_AJ_G0020652.1 mouse_genomes_project 13 64722854 64734125 - MGP_AJ_P0037409 protein_coding protein_coding MGP_AJ_T0038050.1 MGP_AJ_G0020868.1 mouse_genomes_project 13 104890868 104905619 + MGP_AJ_P0038050 Dimt1 protein_coding protein_coding MGP_AJ_T0037761.1 MGP_AJ_G0020777.1 mouse_genomes_project 13 90967466 91018893 - MGP_AJ_P0037761 Papd4 protein_coding protein_coding MGP_AJ_T0037127.1 MGP_AJ_G0020553.1 mouse_genomes_project 13 52927493 52942173 - MGP_AJ_P0037127 Dbn1 protein_coding protein_coding MGP_AJ_T0037128.1 MGP_AJ_G0020553.1 mouse_genomes_project 13 52927493 52942173 - MGP_AJ_P0037128 Dbn1 protein_coding protein_coding MGP_AJ_T0037129.1 MGP_AJ_G0020553.1 mouse_genomes_project 13 52928007 52942123 - MGP_AJ_P0037129 Dbn1 protein_coding protein_coding MGP_AJ_T0037130.1 MGP_AJ_G0020553.1 mouse_genomes_project 13 52929188 52942128 - Dbn1 protein_coding retained_intron MGP_AJ_T0037131.1 MGP_AJ_G0020553.1 mouse_genomes_project 13 52935421 52936188 - Dbn1 protein_coding retained_intron MGP_AJ_T0037132.1 MGP_AJ_G0020553.1 mouse_genomes_project 13 52935443 52936301 - Dbn1 protein_coding retained_intron MGP_AJ_T0037133.1 MGP_AJ_G0020553.1 mouse_genomes_project 13 52935593 52941695 - MGP_AJ_P0037133 Dbn1 protein_coding protein_coding MGP_AJ_T0037134.1 MGP_AJ_G0020553.1 mouse_genomes_project 13 52935710 52940720 - Dbn1 protein_coding processed_transcript MGP_AJ_T0037135.1 MGP_AJ_G0020553.1 mouse_genomes_project 13 52936323 52938013 - Dbn1 protein_coding retained_intron MGP_AJ_T0100736.1 MGP_AJ_G0038702.1 mouse_genomes_project 13 67956295 67956423 + Gm26018 snoRNA snoRNA MGP_AJ_T0036607.1 MGP_AJ_G0020378.1 mouse_genomes_project 13 28940723 28944673 + MGP_AJ_P0036607 Foxc1 protein_coding protein_coding MGP_AJ_T0037217.1 MGP_AJ_G0020584.1 mouse_genomes_project 13 55714543 55757198 - MGP_AJ_P0037217 Gkap1 protein_coding protein_coding MGP_AJ_T0037218.1 MGP_AJ_G0020584.1 mouse_genomes_project 13 55714803 55757150 - MGP_AJ_P0037218 Gkap1 protein_coding unknown_likely_coding MGP_AJ_T0036299.1 MGP_AJ_G0020214.1 mouse_genomes_project 13 15849393 16040308 + MGP_AJ_P0036299 Amph protein_coding protein_coding MGP_AJ_T0036300.1 MGP_AJ_G0020214.1 mouse_genomes_project 13 15849413 16040311 + MGP_AJ_P0036300 Amph protein_coding protein_coding MGP_AJ_T0036301.1 MGP_AJ_G0020214.1 mouse_genomes_project 13 15849440 15990395 + Amph protein_coding retained_intron MGP_AJ_T0036302.1 MGP_AJ_G0020214.1 mouse_genomes_project 13 16006430 16008337 + Amph protein_coding retained_intron MGP_AJ_T0036303.1 MGP_AJ_G0020214.1 mouse_genomes_project 13 16008101 16031831 + Amph protein_coding processed_transcript MGP_AJ_T0006543.1 MGP_AJ_G0005424.1 mouse_genomes_project 13 28462571 28464762 - Gm11374 lincRNA lincRNA MGP_AJ_T0006588.1 MGP_AJ_G0005452.1 mouse_genomes_project 13 51828844 51829087 - Gm16248 lincRNA lincRNA MGP_AJ_T0036323.1 MGP_AJ_G0020222.1 mouse_genomes_project 13 17655037 17864547 + MGP_AJ_P0036323 Aoah protein_coding protein_coding MGP_AJ_T0012965.1 MGP_AJ_G0011060.1 mouse_genomes_project 13 108257583 108258436 - processed_pseudogene processed_pseudogene MGP_AJ_T0003437.1 MGP_AJ_G0003151.1 mouse_genomes_project 13 21811443 21817453 + 1700016G14Rik antisense antisense MGP_AJ_T0000890.1 MGP_AJ_G0000824.1 mouse_genomes_project 13 88204408 88205304 - TEC TEC MGP_AJ_T0100726.1 MGP_AJ_G0038692.1 mouse_genomes_project 13 43969424 43969554 - Gm24620 snoRNA snoRNA MGP_AJ_T0036463.1 MGP_AJ_G0020316.1 mouse_genomes_project 13 20817666 20818308 + MGP_AJ_P0036463 Hist1h1a protein_coding protein_coding MGP_AJ_T0038162.1 MGP_AJ_G0020904.1 mouse_genomes_project 13 111797959 112166100 + MGP_AJ_P0038162 Arl15 protein_coding protein_coding MGP_AJ_T0037239.1 MGP_AJ_G0020588.1 mouse_genomes_project 13 55889669 55898228 + MGP_AJ_P0037239 Rmi1 protein_coding protein_coding MGP_AJ_T0036994.1 MGP_AJ_G0020522.1 mouse_genomes_project 13 51885569 51895574 - MGP_AJ_P0036994 Thoc3 protein_coding protein_coding MGP_AJ_T0036995.1 MGP_AJ_G0020522.1 mouse_genomes_project 13 51890411 51895513 - Thoc3 protein_coding processed_transcript MGP_AJ_T0036996.1 MGP_AJ_G0020522.1 mouse_genomes_project 13 51894534 51895551 - Thoc3 protein_coding retained_intron MGP_AJ_T0037526.1 MGP_AJ_G0020712.1 mouse_genomes_project 13 71814864 71815050 - MGP_AJ_P0037526 Gm10126 protein_coding protein_coding MGP_AJ_T0017347.1 MGP_AJ_G0015226.1 mouse_genomes_project 13 22025306 22029324 + 9330162012Rik processed_transcript processed_transcript MGP_AJ_T0036464.1 MGP_AJ_G0020317.1 mouse_genomes_project 13 20836619 20845509 + MGP_AJ_P0036464 Trim38 protein_coding protein_coding MGP_AJ_T0100824.1 MGP_AJ_G0038790.1 mouse_genomes_project 15 27109410 27109588 - Gm26163 snoRNA snoRNA MGP_AJ_T0000946.1 MGP_AJ_G0000880.1 mouse_genomes_project 15 101465308 101465645 + TEC TEC MGP_AJ_T0101956.1 MGP_AJ_G0039797.1 mouse_genomes_project 15 60775759 60907787 + transcribed_unprocessed_pseudogene processed_transcript MGP_AJ_T0003640.1 MGP_AJ_G0003292.1 mouse_genomes_project 15 98636331 98645773 + Galnt6os antisense antisense MGP_AJ_T0040988.1 MGP_AJ_G0021840.1 mouse_genomes_project 15 55866219 55871899 + MGP_AJ_P0040988 Ndufb9 protein_coding protein_coding MGP_AJ_T0040752.1 MGP_AJ_G0021750.1 mouse_genomes_project 15 33086443 33222186 - MGP_AJ_P0040752 Rgs22 protein_coding protein_coding MGP_AJ_T0040753.1 MGP_AJ_G0021750.1 mouse_genomes_project 15 33086534 33118366 - MGP_AJ_P0040753 Rgs22 protein_coding protein_coding MGP_AJ_T0040754.1 MGP_AJ_G0021750.1 mouse_genomes_project 15 33087297 33188942 - MGP_AJ_P0040754 Rgs22 protein_coding protein_coding MGP_AJ_T0040755.1 MGP_AJ_G0021750.1 mouse_genomes_project 15 33126583 33166322 - MGP_AJ_P0040755 Rgs22 protein_coding protein_coding MGP_AJ_T0040756.1 MGP_AJ_G0021750.1 mouse_genomes_project 15 33221016 33222171 - Rgs22 protein_coding retained_intron MGP_AJ_T0041954.1 MGP_AJ_G0022117.1 mouse_genomes_project 15 80721059 80722037 - MGP_AJ_P0041954 protein_coding nonsense_mediated_decay MGP_AJ_T0041955.1 MGP_AJ_G0022117.1 mouse_genomes_project 15 80721306 80727084 - MGP_AJ_P0041955 protein_coding unknown_likely_coding MGP_AJ_T0041956.1 MGP_AJ_G0022117.1 mouse_genomes_project 15 80721646 80722767 - protein_coding retained_intron MGP_AJ_T0041957.1 MGP_AJ_G0022117.1 mouse_genomes_project 15 80723666 80726573 - MGP_AJ_P0041957 protein_coding protein_coding MGP_AJ_T0041958.1 MGP_AJ_G0022117.1 mouse_genomes_project 15 80723692 80727087 - MGP_AJ_P0041958 protein_coding nonsense_mediated_decay MGP_AJ_T0040593.1 MGP_AJ_G0021694.1 mouse_genomes_project 15 9043952 9114015 + MGP_AJ_P0040593 Zfr protein_coding protein_coding MGP_AJ_T0040594.1 MGP_AJ_G0021694.1 mouse_genomes_project 15 9043972 9072997 + MGP_AJ_P0040594 Zfr protein_coding protein_coding MGP_AJ_T0040595.1 MGP_AJ_G0021694.1 mouse_genomes_project 15 9043980 9064665 + MGP_AJ_P0040595 Zfr protein_coding protein_coding MGP_AJ_T0040596.1 MGP_AJ_G0021694.1 mouse_genomes_project 15 9043987 9048518 + Zfr protein_coding processed_transcript MGP_AJ_T0040597.1 MGP_AJ_G0021694.1 mouse_genomes_project 15 9086484 9093875 + MGP_AJ_P0040597 Zfr protein_coding nonsense_mediated_decay MGP_AJ_T0040598.1 MGP_AJ_G0021694.1 mouse_genomes_project 15 9087405 9112325 + MGP_AJ_P0040598 Zfr protein_coding protein_coding MGP_AJ_T0040599.1 MGP_AJ_G0021694.1 mouse_genomes_project 15 9093813 9112795 + MGP_AJ_P0040599 Zfr protein_coding nonsense_mediated_decay MGP_AJ_T0040600.1 MGP_AJ_G0021694.1 mouse_genomes_project 15 9097930 9099441 + Zfr protein_coding retained_intron MGP_AJ_T0040601.1 MGP_AJ_G0021694.1 mouse_genomes_project 15 9107900 9112795 + Zfr protein_coding processed_transcript MGP_AJ_T0040639.1 MGP_AJ_G0021706.1 mouse_genomes_project 15 19593572 20447947 + MGP_AJ_P0040639 Cdh18 protein_coding protein_coding MGP_AJ_T0040640.1 MGP_AJ_G0021706.1 mouse_genomes_project 15 20092081 20235061 + Cdh18 protein_coding retained_intron MGP_AJ_T0040641.1 MGP_AJ_G0021706.1 mouse_genomes_project 15 20092089 20493256 + Cdh18 protein_coding retained_intron MGP_AJ_T0040642.1 MGP_AJ_G0021706.1 mouse_genomes_project 15 20092089 20515246 + MGP_AJ_P0040642 Cdh18 protein_coding protein_coding MGP_AJ_T0040643.1 MGP_AJ_G0021706.1 mouse_genomes_project 15 20233621 20514893 + MGP_AJ_P0040643 Cdh18 protein_coding protein_coding MGP_AJ_T0040644.1 MGP_AJ_G0021706.1 mouse_genomes_project 15 20233783 20514857 + MGP_AJ_P0040644 Cdh18 protein_coding protein_coding MGP_AJ_T0042845.1 MGP_AJ_G0022408.1 mouse_genomes_project 15 101646171 101648488 - MGP_AJ_P0042845 Glycam1 protein_coding protein_coding MGP_AJ_T0042011.1 MGP_AJ_G0022135.1 mouse_genomes_project 15 81868725 81956108 + MGP_AJ_P0042011 Parvb protein_coding protein_coding MGP_AJ_T0042012.1 MGP_AJ_G0022135.1 mouse_genomes_project 15 81868748 81908981 + MGP_AJ_P0042012 Parvb protein_coding nonsense_mediated_decay MGP_AJ_T0042013.1 MGP_AJ_G0022135.1 mouse_genomes_project 15 81894656 81930184 + Parvb protein_coding processed_transcript MGP_AJ_T0041580.1 MGP_AJ_G0022012.1 mouse_genomes_project 15 76259267 76276834 - MGP_AJ_P0041580 Mfng protein_coding protein_coding MGP_AJ_T0041581.1 MGP_AJ_G0022012.1 mouse_genomes_project 15 76263876 76270543 - Mfng protein_coding retained_intron MGP_AJ_T0041582.1 MGP_AJ_G0022012.1 mouse_genomes_project 15 76267252 76270517 - Mfng protein_coding retained_intron MGP_AJ_T0041583.1 MGP_AJ_G0022012.1 mouse_genomes_project 15 76270218 76275255 - Mfng protein_coding processed_transcript MGP_AJ_T0041926.1 MGP_AJ_G0022106.1 mouse_genomes_project 15 79941058 79951389 - MGP_AJ_P0041926 Cyp2d22 protein_coding unknown_likely_coding MGP_AJ_T0006784.1 MGP_AJ_G0005590.1 mouse_genomes_project 15 65347167 65369353 - Gm20732 lincRNA lincRNA MGP_AJ_T0040891.1 MGP_AJ_G0021799.1 mouse_genomes_project 15 48889579 48919433 - MGP_AJ_P0040891 Rad21 protein_coding protein_coding MGP_AJ_T0041042.1 MGP_AJ_G0021858.1 mouse_genomes_project 15 62009457 62045596 - MGP_AJ_P0041042 Gm21961 protein_coding protein_coding MGP_AJ_T0042114.1 MGP_AJ_G0022172.1 mouse_genomes_project 15 86708987 86721487 + Mov10l1 protein_coding retained_intron MGP_AJ_T0042115.1 MGP_AJ_G0022172.1 mouse_genomes_project 15 86708987 86772567 + MGP_AJ_P0042115 Mov10l1 protein_coding protein_coding MGP_AJ_T0042116.1 MGP_AJ_G0022172.1 mouse_genomes_project 15 86709072 86772571 + MGP_AJ_P0042116 Mov10l1 protein_coding protein_coding MGP_AJ_T0042117.1 MGP_AJ_G0022172.1 mouse_genomes_project 15 86746757 86749958 + Mov10l1 protein_coding processed_transcript MGP_AJ_T0042118.1 MGP_AJ_G0022172.1 mouse_genomes_project 15 86749949 86772567 + MGP_AJ_P0042118 Mov10l1 protein_coding protein_coding MGP_AJ_T0042656.1 MGP_AJ_G0022334.1 mouse_genomes_project 15 99399289 99406618 - MGP_AJ_P0042656 Krt87 protein_coding protein_coding MGP_AJ_T0042473.1 MGP_AJ_G0022282.1 mouse_genomes_project 15 96928644 97017128 + MGP_AJ_P0042473 Spats2 protein_coding protein_coding MGP_AJ_T0102355.1 MGP_AJ_G0040097.1 mouse_genomes_project 15 96248379 96252354 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0042738.1 MGP_AJ_G0022375.1 mouse_genomes_project 15 100507323 100516759 + MGP_AJ_P0042738 Amhr2 protein_coding protein_coding MGP_AJ_T0042739.1 MGP_AJ_G0022375.1 mouse_genomes_project 15 100514291 100516674 + MGP_AJ_P0042739 Amhr2 protein_coding protein_coding MGP_AJ_T0042740.1 MGP_AJ_G0022375.1 mouse_genomes_project 15 100514455 100515004 + Amhr2 protein_coding retained_intron MGP_AJ_T0042276.1 MGP_AJ_G0022211.1 mouse_genomes_project 15 90155556 90516593 + MGP_AJ_P0042276 Pdzrn4 protein_coding protein_coding MGP_AJ_T0042277.1 MGP_AJ_G0022211.1 mouse_genomes_project 15 90353376 90516593 + MGP_AJ_P0042277 Pdzrn4 protein_coding protein_coding MGP_AJ_T0040774.1 MGP_AJ_G0021758.1 mouse_genomes_project 15 33865474 33891518 - MGP_AJ_P0040774 Ywhaz protein_coding protein_coding MGP_AJ_T0040775.1 MGP_AJ_G0021758.1 mouse_genomes_project 15 33866276 33891511 - MGP_AJ_P0040775 Ywhaz protein_coding protein_coding MGP_AJ_T0040776.1 MGP_AJ_G0021758.1 mouse_genomes_project 15 33866411 33890817 - MGP_AJ_P0040776 Ywhaz protein_coding protein_coding MGP_AJ_T0040777.1 MGP_AJ_G0021758.1 mouse_genomes_project 15 33871818 33890499 - Ywhaz protein_coding retained_intron MGP_AJ_T0040778.1 MGP_AJ_G0021758.1 mouse_genomes_project 15 33887692 33889394 - MGP_AJ_P0040778 Ywhaz protein_coding protein_coding MGP_AJ_T0040779.1 MGP_AJ_G0021758.1 mouse_genomes_project 15 33887824 33890190 - MGP_AJ_P0040779 Ywhaz protein_coding protein_coding MGP_AJ_T0040780.1 MGP_AJ_G0021758.1 mouse_genomes_project 15 33887879 33891527 - MGP_AJ_P0040780 Ywhaz protein_coding protein_coding MGP_AJ_T0013082.1 MGP_AJ_G0011177.1 mouse_genomes_project 15 51238816 51239223 - processed_pseudogene processed_pseudogene MGP_AJ_T0040975.1 MGP_AJ_G0021830.1 mouse_genomes_project 15 55088778 55127711 - MGP_AJ_P0040975 Fbxo32 protein_coding protein_coding MGP_AJ_T0041579.1 MGP_AJ_G0022011.1 mouse_genomes_project 15 76172247 76220634 - MGP_AJ_P0041579 Elfn2 protein_coding protein_coding MGP_AJ_T0017469.1 MGP_AJ_G0015279.1 mouse_genomes_project 15 76832095 76833463 + Gm20420 processed_transcript processed_transcript MGP_AJ_T0040689.1 MGP_AJ_G0021726.1 mouse_genomes_project 15 28495647 28503482 - MGP_AJ_P0040689 protein_coding protein_coding MGP_AJ_T0041978.1 MGP_AJ_G0022124.1 mouse_genomes_project 15 81151182 81168942 + MGP_AJ_P0041978 Bik protein_coding protein_coding MGP_AJ_T0041760.1 MGP_AJ_G0022060.1 mouse_genomes_project 15 77819628 77931779 + MGP_AJ_P0041760 Cacna1i protein_coding protein_coding MGP_AJ_T0041761.1 MGP_AJ_G0022060.1 mouse_genomes_project 15 77819924 77929262 + MGP_AJ_P0041761 Cacna1i protein_coding nonsense_mediated_decay MGP_AJ_T0041762.1 MGP_AJ_G0022060.1 mouse_genomes_project 15 77820140 77931789 + MGP_AJ_P0041762 Cacna1i protein_coding unknown_likely_coding MGP_AJ_T0041763.1 MGP_AJ_G0022060.1 mouse_genomes_project 15 77922741 77924331 + MGP_AJ_P0041763 Cacna1i protein_coding protein_coding MGP_AJ_T0041764.1 MGP_AJ_G0022060.1 mouse_genomes_project 15 77922741 77924331 + MGP_AJ_P0041764 Cacna1i protein_coding nonsense_mediated_decay MGP_AJ_T0041765.1 MGP_AJ_G0022060.1 mouse_genomes_project 15 77922741 77927330 + MGP_AJ_P0041765 Cacna1i protein_coding protein_coding MGP_AJ_T0041766.1 MGP_AJ_G0022060.1 mouse_genomes_project 15 77922741 77924331 + MGP_AJ_P0041766 Cacna1i protein_coding protein_coding MGP_AJ_T0042718.1 MGP_AJ_G0022371.1 mouse_genomes_project 15 100391769 100398255 + MGP_AJ_P0042718 Myg1 protein_coding protein_coding MGP_AJ_T0042719.1 MGP_AJ_G0022371.1 mouse_genomes_project 15 100391780 100392657 + Myg1 protein_coding retained_intron MGP_AJ_T0042720.1 MGP_AJ_G0022371.1 mouse_genomes_project 15 100391798 100397912 + Myg1 protein_coding retained_intron MGP_AJ_T0042721.1 MGP_AJ_G0022371.1 mouse_genomes_project 15 100391810 100397895 + MGP_AJ_P0042721 Myg1 protein_coding protein_coding MGP_AJ_T0042722.1 MGP_AJ_G0022371.1 mouse_genomes_project 15 100391815 100397807 + MGP_AJ_P0042722 Myg1 protein_coding protein_coding MGP_AJ_T0042723.1 MGP_AJ_G0022371.1 mouse_genomes_project 15 100391977 100397256 + Myg1 protein_coding retained_intron MGP_AJ_T0042724.1 MGP_AJ_G0022371.1 mouse_genomes_project 15 100392490 100396938 + Myg1 protein_coding processed_transcript MGP_AJ_T0042725.1 MGP_AJ_G0022371.1 mouse_genomes_project 15 100393700 100396962 + Myg1 protein_coding retained_intron MGP_AJ_T0042726.1 MGP_AJ_G0022371.1 mouse_genomes_project 15 100396831 100397912 + Myg1 protein_coding retained_intron MGP_AJ_T0042727.1 MGP_AJ_G0022371.1 mouse_genomes_project 15 100397093 100397851 + Myg1 protein_coding retained_intron MGP_AJ_T0041756.1 MGP_AJ_G0022056.1 mouse_genomes_project 15 77705910 77747550 + MGP_AJ_P0041756 Mgat3 protein_coding protein_coding MGP_AJ_T0040668.1 MGP_AJ_G0021714.1 mouse_genomes_project 15 23643762 23998059 - MGP_AJ_P0040668 Fbxl7 protein_coding protein_coding MGP_AJ_T0013096.1 MGP_AJ_G0011191.1 mouse_genomes_project 15 74815153 74815717 - processed_pseudogene processed_pseudogene MGP_AJ_T0041759.1 MGP_AJ_G0022059.1 mouse_genomes_project 15 77792815 77796488 - MGP_AJ_P0041759 Rps19bp1 protein_coding protein_coding MGP_AJ_T0042712.1 MGP_AJ_G0022369.1 mouse_genomes_project 15 100355288 100383247 + MGP_AJ_P0042712 Espl1 protein_coding protein_coding MGP_AJ_T0100831.1 MGP_AJ_G0038797.1 mouse_genomes_project 15 36006998 36007129 + Gm24789 snoRNA snoRNA MGP_AJ_T0010060.1 MGP_AJ_G0008182.1 mouse_genomes_project 15 76894177 76894250 - Mir1943 miRNA miRNA MGP_AJ_T0011395.1 MGP_AJ_G0009517.1 mouse_genomes_project 15 90959947 90966662 + Gm24447 misc_RNA misc_RNA MGP_AJ_T0003606.1 MGP_AJ_G0003266.1 mouse_genomes_project 15 68908515 68912190 + Gm16308 antisense antisense MGP_AJ_T0010090.1 MGP_AJ_G0008212.1 mouse_genomes_project 15 96881844 96881905 + Mir6960 miRNA miRNA MGP_AJ_T0042230.1 MGP_AJ_G0022200.1 mouse_genomes_project 15 87317121 87326509 - MGP_AJ_P0042230 Rabl2 protein_coding protein_coding MGP_AJ_T0042231.1 MGP_AJ_G0022200.1 mouse_genomes_project 15 87317125 87326451 - Rabl2 protein_coding retained_intron MGP_AJ_T0042232.1 MGP_AJ_G0022200.1 mouse_genomes_project 15 87317125 87326450 - MGP_AJ_P0042232 Rabl2 protein_coding protein_coding MGP_AJ_T0042233.1 MGP_AJ_G0022200.1 mouse_genomes_project 15 87317629 87324985 - MGP_AJ_P0042233 Rabl2 protein_coding nonsense_mediated_decay MGP_AJ_T0042234.1 MGP_AJ_G0022200.1 mouse_genomes_project 15 87317901 87319131 - Rabl2 protein_coding retained_intron MGP_AJ_T0042235.1 MGP_AJ_G0022200.1 mouse_genomes_project 15 87317943 87326476 - MGP_AJ_P0042235 Rabl2 protein_coding nonsense_mediated_decay MGP_AJ_T0042236.1 MGP_AJ_G0022200.1 mouse_genomes_project 15 87317971 87326425 - MGP_AJ_P0042236 Rabl2 protein_coding nonsense_mediated_decay MGP_AJ_T0042237.1 MGP_AJ_G0022200.1 mouse_genomes_project 15 87317986 87318906 - MGP_AJ_P0042237 Rabl2 protein_coding protein_coding MGP_AJ_T0042238.1 MGP_AJ_G0022200.1 mouse_genomes_project 15 87318232 87326472 - MGP_AJ_P0042238 Rabl2 protein_coding nonsense_mediated_decay MGP_AJ_T0042239.1 MGP_AJ_G0022200.1 mouse_genomes_project 15 87320817 87326491 - Rabl2 protein_coding retained_intron MGP_AJ_T0042240.1 MGP_AJ_G0022200.1 mouse_genomes_project 15 87322478 87326462 - Rabl2 protein_coding processed_transcript MGP_AJ_T0010050.1 MGP_AJ_G0008172.1 mouse_genomes_project 15 70368006 70368074 - Mir151 miRNA miRNA MGP_AJ_T0099573.1 MGP_AJ_G0037539.1 mouse_genomes_project 15 83896713 83896815 - Gm22818 snRNA snRNA MGP_AJ_T0099550.1 MGP_AJ_G0037516.1 mouse_genomes_project 15 50319840 50319906 + Gm27926 snRNA snRNA MGP_AJ_T0099578.1 MGP_AJ_G0037544.1 mouse_genomes_project 15 93344419 93344523 - Gm24668 snRNA snRNA MGP_AJ_T0042396.1 MGP_AJ_G0022248.1 mouse_genomes_project 15 95963638 95973473 - MGP_AJ_P0042396 Olfr287 protein_coding protein_coding MGP_AJ_T0010034.1 MGP_AJ_G0008156.1 mouse_genomes_project 15 32748378 32748466 - Mir599 miRNA miRNA MGP_AJ_T0040739.1 MGP_AJ_G0021744.1 mouse_genomes_project 15 31635276 31740965 - MGP_AJ_P0040739 Nipal2 protein_coding protein_coding MGP_AJ_T0042089.1 MGP_AJ_G0022161.1 mouse_genomes_project 15 83820682 83841999 - Cerk protein_coding retained_intron MGP_AJ_T0042090.1 MGP_AJ_G0022161.1 mouse_genomes_project 15 83820683 83870661 - MGP_AJ_P0042090 Cerk protein_coding protein_coding MGP_AJ_T0042091.1 MGP_AJ_G0022161.1 mouse_genomes_project 15 83821878 83834024 - MGP_AJ_P0042091 Cerk protein_coding protein_coding MGP_AJ_T0013109.1 MGP_AJ_G0011204.1 mouse_genomes_project 15 89274166 89275322 - processed_pseudogene processed_pseudogene MGP_AJ_T0013086.1 MGP_AJ_G0011181.1 mouse_genomes_project 15 59162547 59163659 - processed_pseudogene processed_pseudogene MGP_AJ_T0042278.1 MGP_AJ_G0022212.1 mouse_genomes_project 15 90971699 91020460 - MGP_AJ_P0042278 Gxylt1 protein_coding protein_coding MGP_AJ_T0042279.1 MGP_AJ_G0022212.1 mouse_genomes_project 15 90976405 91020450 - MGP_AJ_P0042279 Gxylt1 protein_coding protein_coding MGP_AJ_T0101735.1 MGP_AJ_G0039670.1 mouse_genomes_project 15 100699306 100699661 + transcribed_processed_pseudogene processed_transcript MGP_AJ_T0042196.1 MGP_AJ_G0022190.1 mouse_genomes_project 15 87105370 87107175 - MGP_AJ_P0042196 Odf3b protein_coding protein_coding MGP_AJ_T0042197.1 MGP_AJ_G0022190.1 mouse_genomes_project 15 87105426 87107099 - MGP_AJ_P0042197 Odf3b protein_coding unknown_likely_coding MGP_AJ_T0041330.1 MGP_AJ_G0021938.1 mouse_genomes_project 15 73554648 73579306 + MGP_AJ_P0041330 Spatc1 protein_coding protein_coding MGP_AJ_T0006744.1 MGP_AJ_G0005566.1 mouse_genomes_project 15 889993 910527 + Gm2093 lincRNA lincRNA MGP_AJ_T0041268.1 MGP_AJ_G0021922.1 mouse_genomes_project 15 73191667 73196466 + MGP_AJ_P0041268 Tigd5 protein_coding protein_coding MGP_AJ_T0041822.1 MGP_AJ_G0022076.1 mouse_genomes_project 15 79137442 79140439 + Ep300 protein_coding processed_transcript MGP_AJ_T0041823.1 MGP_AJ_G0022076.1 mouse_genomes_project 15 79137488 79205068 + MGP_AJ_P0041823 Ep300 protein_coding protein_coding MGP_AJ_T0041824.1 MGP_AJ_G0022076.1 mouse_genomes_project 15 79138311 79176749 + Ep300 protein_coding retained_intron MGP_AJ_T0041825.1 MGP_AJ_G0022076.1 mouse_genomes_project 15 79165797 79176049 + MGP_AJ_P0041825 Ep300 protein_coding protein_coding MGP_AJ_T0041826.1 MGP_AJ_G0022076.1 mouse_genomes_project 15 79165815 79169065 + Ep300 protein_coding retained_intron MGP_AJ_T0041827.1 MGP_AJ_G0022076.1 mouse_genomes_project 15 79173592 79178984 + MGP_AJ_P0041827 Ep300 protein_coding protein_coding MGP_AJ_T0041828.1 MGP_AJ_G0022076.1 mouse_genomes_project 15 79179955 79180394 + MGP_AJ_P0041828 Ep300 protein_coding protein_coding MGP_AJ_T0041829.1 MGP_AJ_G0022076.1 mouse_genomes_project 15 79186483 79193385 + Ep300 protein_coding retained_intron MGP_AJ_T0041830.1 MGP_AJ_G0022076.1 mouse_genomes_project 15 79188971 79197592 + Ep300 protein_coding retained_intron MGP_AJ_T0041831.1 MGP_AJ_G0022076.1 mouse_genomes_project 15 79197840 79202173 + Ep300 protein_coding retained_intron MGP_AJ_T0000935.1 MGP_AJ_G0000869.1 mouse_genomes_project 15 18214661 18215082 + TEC TEC MGP_AJ_T0042296.1 MGP_AJ_G0022217.1 mouse_genomes_project 15 92004547 92132675 - MGP_AJ_P0042296 Adamts20 protein_coding protein_coding MGP_AJ_T0042297.1 MGP_AJ_G0022217.1 mouse_genomes_project 15 92048477 92132506 - MGP_AJ_P0042297 Adamts20 protein_coding unknown_likely_coding MGP_AJ_T0042298.1 MGP_AJ_G0022217.1 mouse_genomes_project 15 92048480 92132675 - MGP_AJ_P0042298 Adamts20 protein_coding protein_coding MGP_AJ_T0042299.1 MGP_AJ_G0022217.1 mouse_genomes_project 15 92085421 92132767 - Adamts20 protein_coding retained_intron MGP_AJ_T0042300.1 MGP_AJ_G0022217.1 mouse_genomes_project 15 92123150 92193415 - Adamts20 protein_coding processed_transcript MGP_AJ_T0040781.1 MGP_AJ_G0021759.1 mouse_genomes_project 15 33968399 33977709 - MGP_AJ_P0040781 Gm10384 protein_coding protein_coding MGP_AJ_T0000937.1 MGP_AJ_G0000871.1 mouse_genomes_project 15 58918151 58922243 - TEC TEC MGP_AJ_T0000933.1 MGP_AJ_G0000867.1 mouse_genomes_project 15 9563778 9566064 - TEC TEC MGP_AJ_T0040637.1 MGP_AJ_G0021704.1 mouse_genomes_project 15 17697781 17699313 - MGP_AJ_P0040637 Acot10 protein_coding protein_coding MGP_AJ_T0042532.1 MGP_AJ_G0022298.1 mouse_genomes_project 15 97517259 97529917 + MGP_AJ_P0042532 Smarcd1 protein_coding protein_coding MGP_AJ_T0003599.1 MGP_AJ_G0003259.1 mouse_genomes_project 15 52362396 52365302 - 1700040F17Rik antisense antisense MGP_AJ_T0006803.1 MGP_AJ_G0005605.1 mouse_genomes_project 15 90101405 90136808 + Gm26760 lincRNA lincRNA MGP_AJ_T0099548.1 MGP_AJ_G0037514.1 mouse_genomes_project 15 46461671 46461777 + Gm23848 snRNA snRNA MGP_AJ_T0041066.1 MGP_AJ_G0021865.1 mouse_genomes_project 15 63586268 63652665 + MGP_AJ_P0041066 Phf20l1 protein_coding protein_coding MGP_AJ_T0041084.1 MGP_AJ_G0021869.1 mouse_genomes_project 15 63941944 63982059 - MGP_AJ_P0041084 Ndrg1 protein_coding protein_coding MGP_AJ_T0041085.1 MGP_AJ_G0021869.1 mouse_genomes_project 15 63943489 63947088 - Ndrg1 protein_coding retained_intron MGP_AJ_T0041086.1 MGP_AJ_G0021869.1 mouse_genomes_project 15 63943700 63982058 - MGP_AJ_P0041086 Ndrg1 protein_coding protein_coding MGP_AJ_T0041087.1 MGP_AJ_G0021869.1 mouse_genomes_project 15 63946776 63982058 - Ndrg1 protein_coding retained_intron MGP_AJ_T0041088.1 MGP_AJ_G0021869.1 mouse_genomes_project 15 63954632 63982058 - MGP_AJ_P0041088 Ndrg1 protein_coding nonsense_mediated_decay MGP_AJ_T0041089.1 MGP_AJ_G0021869.1 mouse_genomes_project 15 63955694 63982058 - MGP_AJ_P0041089 Ndrg1 protein_coding nonsense_mediated_decay MGP_AJ_T0041090.1 MGP_AJ_G0021869.1 mouse_genomes_project 15 63955699 63961099 - MGP_AJ_P0041090 Ndrg1 protein_coding protein_coding MGP_AJ_T0041091.1 MGP_AJ_G0021869.1 mouse_genomes_project 15 63955699 63980343 - MGP_AJ_P0041091 Ndrg1 protein_coding protein_coding MGP_AJ_T0041092.1 MGP_AJ_G0021869.1 mouse_genomes_project 15 63955712 63982035 - MGP_AJ_P0041092 Ndrg1 protein_coding nonsense_mediated_decay MGP_AJ_T0041093.1 MGP_AJ_G0021869.1 mouse_genomes_project 15 63955717 63982014 - MGP_AJ_P0041093 Ndrg1 protein_coding nonsense_mediated_decay MGP_AJ_T0041094.1 MGP_AJ_G0021869.1 mouse_genomes_project 15 63955749 63982035 - MGP_AJ_P0041094 Ndrg1 protein_coding protein_coding MGP_AJ_T0041095.1 MGP_AJ_G0021869.1 mouse_genomes_project 15 63955756 63980358 - MGP_AJ_P0041095 Ndrg1 protein_coding protein_coding MGP_AJ_T0041096.1 MGP_AJ_G0021869.1 mouse_genomes_project 15 63959156 63982059 - MGP_AJ_P0041096 Ndrg1 protein_coding protein_coding MGP_AJ_T0041653.1 MGP_AJ_G0022031.1 mouse_genomes_project 15 76774966 76803839 - MGP_AJ_P0041653 Baiap2l2 protein_coding protein_coding MGP_AJ_T0041654.1 MGP_AJ_G0022031.1 mouse_genomes_project 15 76774967 76803744 - MGP_AJ_P0041654 Baiap2l2 protein_coding nonsense_mediated_decay MGP_AJ_T0041655.1 MGP_AJ_G0022031.1 mouse_genomes_project 15 76775103 76776998 - Baiap2l2 protein_coding processed_transcript MGP_AJ_T0041656.1 MGP_AJ_G0022031.1 mouse_genomes_project 15 76777362 76778944 - Baiap2l2 protein_coding processed_transcript MGP_AJ_T0041657.1 MGP_AJ_G0022031.1 mouse_genomes_project 15 76787830 76803795 - MGP_AJ_P0041657 Baiap2l2 protein_coding protein_coding MGP_AJ_T0041074.1 MGP_AJ_G0021867.1 mouse_genomes_project 15 63793153 63844258 - MGP_AJ_P0041074 Sla protein_coding protein_coding MGP_AJ_T0041075.1 MGP_AJ_G0021867.1 mouse_genomes_project 15 63793198 63825391 - MGP_AJ_P0041075 Sla protein_coding protein_coding MGP_AJ_T0041076.1 MGP_AJ_G0021867.1 mouse_genomes_project 15 63794412 63813890 - MGP_AJ_P0041076 Sla protein_coding protein_coding MGP_AJ_T0041077.1 MGP_AJ_G0021867.1 mouse_genomes_project 15 63794876 63844441 - MGP_AJ_P0041077 Sla protein_coding protein_coding MGP_AJ_T0041078.1 MGP_AJ_G0021867.1 mouse_genomes_project 15 63798054 63816048 - Sla protein_coding retained_intron MGP_AJ_T0006783.1 MGP_AJ_G0005589.1 mouse_genomes_project 15 64235885 64386018 + lincRNA lincRNA MGP_AJ_T0041688.1 MGP_AJ_G0022039.1 mouse_genomes_project 15 77085930 77129764 - MGP_AJ_P0041688 Dmc1 protein_coding protein_coding MGP_AJ_T0042082.1 MGP_AJ_G0022159.1 mouse_genomes_project 15 83568576 83712020 - MGP_AJ_P0042082 Celsr1 protein_coding protein_coding MGP_AJ_T0042083.1 MGP_AJ_G0022159.1 mouse_genomes_project 15 83568745 83712013 - MGP_AJ_P0042083 Celsr1 protein_coding unknown_likely_coding MGP_AJ_T0042319.1 MGP_AJ_G0022226.1 mouse_genomes_project 15 93560911 93566406 - MGP_AJ_P0042319 Gm17546 protein_coding protein_coding MGP_AJ_T0040557.1 MGP_AJ_G0021679.1 mouse_genomes_project 15 7268964 7310357 + MGP_AJ_P0040557 Gm21973 protein_coding nonsense_mediated_decay MGP_AJ_T0017464.1 MGP_AJ_G0015275.1 mouse_genomes_project 15 70774296 70781731 + 1700010B13Rik processed_transcript lincRNA MGP_AJ_T0017465.1 MGP_AJ_G0015275.1 mouse_genomes_project 15 70774318 70776047 + 1700010B13Rik processed_transcript retained_intron MGP_AJ_T0041862.1 MGP_AJ_G0022084.1 mouse_genomes_project 15 79429123 79435739 - MGP_AJ_P0041862 Phf5a protein_coding protein_coding MGP_AJ_T0041863.1 MGP_AJ_G0022084.1 mouse_genomes_project 15 79429490 79435493 - Phf5a protein_coding processed_transcript MGP_AJ_T0006762.1 MGP_AJ_G0005580.1 mouse_genomes_project 15 37461916 37477872 - Gm16294 lincRNA lincRNA MGP_AJ_T0040664.1 MGP_AJ_G0021713.1 mouse_genomes_project 15 23404598 23407920 + March11 protein_coding retained_intron MGP_AJ_T0040665.1 MGP_AJ_G0021713.1 mouse_genomes_project 15 23404614 23508666 + MGP_AJ_P0040665 March11 protein_coding protein_coding MGP_AJ_T0040666.1 MGP_AJ_G0021713.1 mouse_genomes_project 15 23404614 23508666 + MGP_AJ_P0040666 March11 protein_coding protein_coding MGP_AJ_T0040667.1 MGP_AJ_G0021713.1 mouse_genomes_project 15 23485647 23508666 + March11 protein_coding retained_intron MGP_AJ_T0010032.1 MGP_AJ_G0008154.1 mouse_genomes_project 15 24659598 24659663 + Mir7117 miRNA miRNA MGP_AJ_T0010094.1 MGP_AJ_G0008216.1 mouse_genomes_project 15 99540873 99541011 + Gm44393 miRNA miRNA MGP_AJ_T0003621.1 MGP_AJ_G0003276.1 mouse_genomes_project 15 83767023 83769944 - Gm15722 antisense antisense MGP_AJ_T0010071.1 MGP_AJ_G0008193.1 mouse_genomes_project 15 80144604 80144664 + Gm27924 miRNA miRNA MGP_AJ_T0041972.1 MGP_AJ_G0022122.1 mouse_genomes_project 15 80996561 81055167 - MGP_AJ_P0041972 Pacsin2 protein_coding protein_coding MGP_AJ_T0041973.1 MGP_AJ_G0022122.1 mouse_genomes_project 15 80996561 81089364 - MGP_AJ_P0041973 Pacsin2 protein_coding protein_coding MGP_AJ_T0041974.1 MGP_AJ_G0022122.1 mouse_genomes_project 15 80997076 81023431 - MGP_AJ_P0041974 Pacsin2 protein_coding protein_coding MGP_AJ_T0040647.1 MGP_AJ_G0021709.1 mouse_genomes_project 15 22518907 22519560 + MGP_AJ_P0040647 Gm5468 protein_coding protein_coding MGP_AJ_T0042749.1 MGP_AJ_G0022378.1 mouse_genomes_project 15 100562176 100581368 - MGP_AJ_P0042749 Map3k12 protein_coding protein_coding MGP_AJ_T0042750.1 MGP_AJ_G0022378.1 mouse_genomes_project 15 100563315 100575253 - MGP_AJ_P0042750 Map3k12 protein_coding protein_coding MGP_AJ_T0042751.1 MGP_AJ_G0022378.1 mouse_genomes_project 15 100563565 100581596 - MGP_AJ_P0042751 Map3k12 protein_coding protein_coding MGP_AJ_T0042753.1 MGP_AJ_G0022378.1 mouse_genomes_project 15 100569908 100581536 - MGP_AJ_P0042753 Map3k12 protein_coding protein_coding MGP_AJ_T0042754.1 MGP_AJ_G0022378.1 mouse_genomes_project 15 100569970 100581507 - MGP_AJ_P0042754 Map3k12 protein_coding protein_coding MGP_AJ_T0042755.1 MGP_AJ_G0022378.1 mouse_genomes_project 15 100570007 100581348 - MGP_AJ_P0042755 Map3k12 protein_coding protein_coding MGP_AJ_T0042756.1 MGP_AJ_G0022378.1 mouse_genomes_project 15 100570656 100581344 - Map3k12 protein_coding processed_transcript MGP_AJ_T0042757.1 MGP_AJ_G0022378.1 mouse_genomes_project 15 100573656 100575345 - Map3k12 protein_coding processed_transcript MGP_AJ_T0041640.1 MGP_AJ_G0022029.1 mouse_genomes_project 15 76745044 76765545 + MGP_AJ_P0041640 Pick1 protein_coding protein_coding MGP_AJ_T0041641.1 MGP_AJ_G0022029.1 mouse_genomes_project 15 76745253 76765527 + MGP_AJ_P0041641 Pick1 protein_coding protein_coding MGP_AJ_T0041642.1 MGP_AJ_G0022029.1 mouse_genomes_project 15 76745262 76772741 + MGP_AJ_P0041642 Pick1 protein_coding protein_coding MGP_AJ_T0041643.1 MGP_AJ_G0022029.1 mouse_genomes_project 15 76745282 76764023 + Pick1 protein_coding retained_intron MGP_AJ_T0041644.1 MGP_AJ_G0022029.1 mouse_genomes_project 15 76745287 76764023 + Pick1 protein_coding retained_intron MGP_AJ_T0041645.1 MGP_AJ_G0022029.1 mouse_genomes_project 15 76745329 76750203 + Pick1 protein_coding processed_transcript MGP_AJ_T0041646.1 MGP_AJ_G0022029.1 mouse_genomes_project 15 76745376 76757427 + Pick1 protein_coding retained_intron MGP_AJ_T0041647.1 MGP_AJ_G0022029.1 mouse_genomes_project 15 76745574 76765390 + MGP_AJ_P0041647 Pick1 protein_coding protein_coding MGP_AJ_T0041648.1 MGP_AJ_G0022029.1 mouse_genomes_project 15 76759025 76763618 + Pick1 protein_coding processed_transcript MGP_AJ_T0041649.1 MGP_AJ_G0022029.1 mouse_genomes_project 15 76760858 76763586 + Pick1 protein_coding processed_transcript MGP_AJ_T0041650.1 MGP_AJ_G0022029.1 mouse_genomes_project 15 76761255 76763792 + Pick1 protein_coding processed_transcript MGP_AJ_T0041651.1 MGP_AJ_G0022029.1 mouse_genomes_project 15 76762320 76765527 + Pick1 protein_coding processed_transcript MGP_AJ_T0006820.1 MGP_AJ_G0005616.1 mouse_genomes_project 15 100517491 100546554 - Gm26518 lincRNA lincRNA MGP_AJ_T0040706.1 MGP_AJ_G0021734.1 mouse_genomes_project 15 30144935 30659491 + MGP_AJ_P0040706 Cpq protein_coding protein_coding MGP_AJ_T0099577.1 MGP_AJ_G0037543.1 mouse_genomes_project 15 91090725 91090829 + Gm26371 snRNA snRNA MGP_AJ_T0041975.1 MGP_AJ_G0022123.1 mouse_genomes_project 15 81108922 81129759 - MGP_AJ_P0041975 Ttll1 protein_coding protein_coding MGP_AJ_T0041976.1 MGP_AJ_G0022123.1 mouse_genomes_project 15 81126855 81135115 - MGP_AJ_P0041976 Ttll1 protein_coding protein_coding MGP_AJ_T0041977.1 MGP_AJ_G0022123.1 mouse_genomes_project 15 81129978 81135205 - Ttll1 protein_coding processed_transcript MGP_AJ_T0041686.1 MGP_AJ_G0022037.1 mouse_genomes_project 15 77040624 77051779 + MGP_AJ_P0041686 Kdelr3 protein_coding protein_coding MGP_AJ_T0040577.1 MGP_AJ_G0021684.1 mouse_genomes_project 15 7433255 7463573 - MGP_AJ_P0040577 Ttc23l protein_coding protein_coding MGP_AJ_T0040578.1 MGP_AJ_G0021684.1 mouse_genomes_project 15 7437067 7491857 - MGP_AJ_P0040578 Ttc23l protein_coding protein_coding MGP_AJ_T0040579.1 MGP_AJ_G0021684.1 mouse_genomes_project 15 7470517 7491839 - MGP_AJ_P0040579 Ttc23l protein_coding protein_coding MGP_AJ_T0042194.1 MGP_AJ_G0022188.1 mouse_genomes_project 15 87098861 87101048 - MGP_AJ_P0042194 Sco2 protein_coding protein_coding MGP_AJ_T0041105.1 MGP_AJ_G0021874.1 mouse_genomes_project 15 68894196 69146467 - MGP_AJ_P0041105 Col22a1 protein_coding protein_coding MGP_AJ_T0041106.1 MGP_AJ_G0021874.1 mouse_genomes_project 15 68969128 69002290 - MGP_AJ_P0041106 Col22a1 protein_coding protein_coding MGP_AJ_T0041107.1 MGP_AJ_G0021874.1 mouse_genomes_project 15 69009389 69059983 - Col22a1 protein_coding processed_transcript MGP_AJ_T0041108.1 MGP_AJ_G0021874.1 mouse_genomes_project 15 69028285 69060008 - MGP_AJ_P0041108 Col22a1 protein_coding protein_coding MGP_AJ_T0042198.1 MGP_AJ_G0022191.1 mouse_genomes_project 15 87114816 87116857 + MGP_AJ_P0042198 Klhdc7b protein_coding protein_coding MGP_AJ_T0040719.1 MGP_AJ_G0021738.1 mouse_genomes_project 15 31357667 31497128 + MGP_AJ_P0040719 Matn2 protein_coding protein_coding MGP_AJ_T0040720.1 MGP_AJ_G0021738.1 mouse_genomes_project 15 31357668 31497132 + MGP_AJ_P0040720 Matn2 protein_coding protein_coding MGP_AJ_T0100838.1 MGP_AJ_G0038804.1 mouse_genomes_project 15 50550647 50550779 - Gm23200 snoRNA snoRNA MGP_AJ_T0006821.1 MGP_AJ_G0005617.1 mouse_genomes_project 15 101022811 101026480 - Hotair lincRNA lincRNA MGP_AJ_T0041222.1 MGP_AJ_G0021910.1 mouse_genomes_project 15 72725705 72727654 + MGP_AJ_P0041222 Ly6l protein_coding protein_coding MGP_AJ_T0042156.1 MGP_AJ_G0022181.1 mouse_genomes_project 15 86906842 86921098 - MGP_AJ_P0042156 Dennd6b protein_coding protein_coding MGP_AJ_T0041357.1 MGP_AJ_G0021944.1 mouse_genomes_project 15 73635020 73639100 - Sharpin protein_coding retained_intron MGP_AJ_T0041358.1 MGP_AJ_G0021944.1 mouse_genomes_project 15 73635020 73639101 - MGP_AJ_P0041358 Sharpin protein_coding protein_coding MGP_AJ_T0041359.1 MGP_AJ_G0021944.1 mouse_genomes_project 15 73635021 73639037 - Sharpin protein_coding retained_intron MGP_AJ_T0041360.1 MGP_AJ_G0021944.1 mouse_genomes_project 15 73635021 73639065 - Sharpin protein_coding retained_intron MGP_AJ_T0041361.1 MGP_AJ_G0021944.1 mouse_genomes_project 15 73635034 73635674 - MGP_AJ_P0041361 Sharpin protein_coding protein_coding MGP_AJ_T0041362.1 MGP_AJ_G0021944.1 mouse_genomes_project 15 73635098 73636185 - Sharpin protein_coding retained_intron MGP_AJ_T0041363.1 MGP_AJ_G0021944.1 mouse_genomes_project 15 73635618 73638740 - MGP_AJ_P0041363 Sharpin protein_coding nonsense_mediated_decay MGP_AJ_T0041364.1 MGP_AJ_G0021944.1 mouse_genomes_project 15 73635838 73638681 - Sharpin protein_coding retained_intron MGP_AJ_T0041365.1 MGP_AJ_G0021944.1 mouse_genomes_project 15 73635886 73638672 - Sharpin protein_coding retained_intron MGP_AJ_T0041366.1 MGP_AJ_G0021944.1 mouse_genomes_project 15 73636601 73638702 - Sharpin protein_coding retained_intron MGP_AJ_T0010058.1 MGP_AJ_G0008180.1 mouse_genomes_project 15 76403967 76404041 + Mir6955 miRNA miRNA MGP_AJ_T0042009.1 MGP_AJ_G0022133.1 mouse_genomes_project 15 81801385 81824934 + MGP_AJ_P0042009 Pnpla3 protein_coding protein_coding MGP_AJ_T0013060.1 MGP_AJ_G0011155.1 mouse_genomes_project 15 5866765 5877225 - processed_pseudogene processed_pseudogene MGP_AJ_T0013061.1 MGP_AJ_G0011156.1 mouse_genomes_project 15 7458494 7459753 - processed_pseudogene processed_pseudogene MGP_AJ_T0006792.1 MGP_AJ_G0005598.1 mouse_genomes_project 15 80583792 80588893 - Gm29019 lincRNA lincRNA MGP_AJ_T0006793.1 MGP_AJ_G0005598.1 mouse_genomes_project 15 80583850 80588774 - Gm29019 lincRNA lincRNA MGP_AJ_T0040589.1 MGP_AJ_G0021692.1 mouse_genomes_project 15 8773292 8841430 - MGP_AJ_P0040589 Npr3 protein_coding protein_coding MGP_AJ_T0013104.1 MGP_AJ_G0011199.1 mouse_genomes_project 15 83172916 83173324 + processed_pseudogene processed_pseudogene MGP_AJ_T0101957.1 MGP_AJ_G0039798.1 mouse_genomes_project 15 60775774 60778127 + transcribed_unprocessed_pseudogene processed_transcript MGP_AJ_T0101959.1 MGP_AJ_G0039798.1 mouse_genomes_project 15 60775788 60778007 + transcribed_unprocessed_pseudogene processed_transcript MGP_AJ_T0042799.1 MGP_AJ_G0022389.1 mouse_genomes_project 15 101045468 101050534 + MGP_AJ_P0042799 Hoxc10 protein_coding protein_coding MGP_AJ_T0100840.1 MGP_AJ_G0038806.1 mouse_genomes_project 15 55058912 55059039 + Gm22488 snoRNA snoRNA MGP_AJ_T0041412.1 MGP_AJ_G0021954.1 mouse_genomes_project 15 73805596 73811564 - MGP_AJ_P0041412 Scrt1 protein_coding protein_coding MGP_AJ_T0041413.1 MGP_AJ_G0021954.1 mouse_genomes_project 15 73805606 73811337 - MGP_AJ_P0041413 Scrt1 protein_coding protein_coding MGP_AJ_T0042027.1 MGP_AJ_G0022140.1 mouse_genomes_project 15 82369085 82415514 + MGP_AJ_P0042027 Arhgap8 protein_coding protein_coding MGP_AJ_T0042028.1 MGP_AJ_G0022140.1 mouse_genomes_project 15 82369085 82415514 + MGP_AJ_P0042028 Arhgap8 protein_coding protein_coding MGP_AJ_T0042029.1 MGP_AJ_G0022140.1 mouse_genomes_project 15 82369116 82402612 + Arhgap8 protein_coding retained_intron MGP_AJ_T0042030.1 MGP_AJ_G0022140.1 mouse_genomes_project 15 82381906 82415511 + MGP_AJ_P0042030 Arhgap8 protein_coding protein_coding MGP_AJ_T0042031.1 MGP_AJ_G0022140.1 mouse_genomes_project 15 82391017 82409510 + Arhgap8 protein_coding processed_transcript MGP_AJ_T0042032.1 MGP_AJ_G0022140.1 mouse_genomes_project 15 82413183 82415247 + Arhgap8 protein_coding retained_intron MGP_AJ_T0042404.1 MGP_AJ_G0022254.1 mouse_genomes_project 15 96177109 96191851 + MGP_AJ_P0042404 1700031M16Rik protein_coding protein_coding MGP_AJ_T0042405.1 MGP_AJ_G0022254.1 mouse_genomes_project 15 96177116 96194574 + MGP_AJ_P0042405 1700031M16Rik protein_coding protein_coding MGP_AJ_T0042406.1 MGP_AJ_G0022254.1 mouse_genomes_project 15 96177135 96191052 + 1700031M16Rik protein_coding processed_transcript MGP_AJ_T0042407.1 MGP_AJ_G0022254.1 mouse_genomes_project 15 96177135 96193694 + 1700031M16Rik protein_coding processed_transcript MGP_AJ_T0042408.1 MGP_AJ_G0022254.1 mouse_genomes_project 15 96177135 96193694 + 1700031M16Rik protein_coding processed_transcript MGP_AJ_T0042409.1 MGP_AJ_G0022254.1 mouse_genomes_project 15 96177135 96194445 + MGP_AJ_P0042409 1700031M16Rik protein_coding protein_coding MGP_AJ_T0042410.1 MGP_AJ_G0022254.1 mouse_genomes_project 15 96177135 96194578 + MGP_AJ_P0042410 1700031M16Rik protein_coding protein_coding MGP_AJ_T0042477.1 MGP_AJ_G0022286.1 mouse_genomes_project 15 97103608 97114477 + MGP_AJ_P0042477 Prpf40b protein_coding protein_coding MGP_AJ_T0042478.1 MGP_AJ_G0022286.1 mouse_genomes_project 15 97103760 97125545 + Prpf40b protein_coding retained_intron MGP_AJ_T0042479.1 MGP_AJ_G0022286.1 mouse_genomes_project 15 97103762 97124641 + Prpf40b protein_coding retained_intron MGP_AJ_T0042480.1 MGP_AJ_G0022286.1 mouse_genomes_project 15 97103762 97124641 + Prpf40b protein_coding retained_intron MGP_AJ_T0042481.1 MGP_AJ_G0022286.1 mouse_genomes_project 15 97103765 97115589 + MGP_AJ_P0042481 Prpf40b protein_coding nonsense_mediated_decay MGP_AJ_T0042482.1 MGP_AJ_G0022286.1 mouse_genomes_project 15 97103792 97125545 + MGP_AJ_P0042482 Prpf40b protein_coding protein_coding MGP_AJ_T0042483.1 MGP_AJ_G0022286.1 mouse_genomes_project 15 97104416 97125537 + MGP_AJ_P0042483 Prpf40b protein_coding protein_coding MGP_AJ_T0042484.1 MGP_AJ_G0022286.1 mouse_genomes_project 15 97111802 97125026 + MGP_AJ_P0042484 Prpf40b protein_coding protein_coding MGP_AJ_T0042485.1 MGP_AJ_G0022286.1 mouse_genomes_project 15 97111803 97125534 + MGP_AJ_P0042485 Prpf40b protein_coding protein_coding MGP_AJ_T0042486.1 MGP_AJ_G0022286.1 mouse_genomes_project 15 97116396 97123603 + Prpf40b protein_coding retained_intron MGP_AJ_T0042487.1 MGP_AJ_G0022286.1 mouse_genomes_project 15 97118416 97124416 + Prpf40b protein_coding retained_intron MGP_AJ_T0042488.1 MGP_AJ_G0022286.1 mouse_genomes_project 15 97123377 97124320 + Prpf40b protein_coding retained_intron MGP_AJ_T0042489.1 MGP_AJ_G0022286.1 mouse_genomes_project 15 97123386 97125198 + MGP_AJ_P0042489 Prpf40b protein_coding protein_coding MGP_AJ_T0042490.1 MGP_AJ_G0022286.1 mouse_genomes_project 15 97123415 97125340 + MGP_AJ_P0042490 Prpf40b protein_coding protein_coding MGP_AJ_T0042491.1 MGP_AJ_G0022286.1 mouse_genomes_project 15 97124049 97125537 + MGP_AJ_P0042491 Prpf40b protein_coding protein_coding MGP_AJ_T0040985.1 MGP_AJ_G0021837.1 mouse_genomes_project 15 55808138 55812271 + MGP_AJ_P0040985 Trmt12 protein_coding protein_coding MGP_AJ_T0040928.1 MGP_AJ_G0021816.1 mouse_genomes_project 15 52466437 52491277 - MGP_AJ_P0040928 Mrpl13 protein_coding protein_coding MGP_AJ_T0040929.1 MGP_AJ_G0021816.1 mouse_genomes_project 15 52466437 52490878 - MGP_AJ_P0040929 Mrpl13 protein_coding nonsense_mediated_decay MGP_AJ_T0040930.1 MGP_AJ_G0021816.1 mouse_genomes_project 15 52470979 52480508 - MGP_AJ_P0040930 Mrpl13 protein_coding protein_coding MGP_AJ_T0040931.1 MGP_AJ_G0021816.1 mouse_genomes_project 15 52475214 52490812 - Mrpl13 protein_coding retained_intron MGP_AJ_T0040932.1 MGP_AJ_G0021816.1 mouse_genomes_project 15 52481797 52490804 - Mrpl13 protein_coding retained_intron MGP_AJ_T0040504.1 MGP_AJ_G0021668.1 mouse_genomes_project 15 5567780 5648093 - MGP_AJ_P0040504 Slc1a3 protein_coding protein_coding MGP_AJ_T0040505.1 MGP_AJ_G0021668.1 mouse_genomes_project 15 5568382 5585795 - Slc1a3 protein_coding retained_intron MGP_AJ_T0040506.1 MGP_AJ_G0021668.1 mouse_genomes_project 15 5575981 5577043 - Slc1a3 protein_coding retained_intron MGP_AJ_T0040507.1 MGP_AJ_G0021668.1 mouse_genomes_project 15 5616026 5647745 - Slc1a3 protein_coding processed_transcript MGP_AJ_T0040508.1 MGP_AJ_G0021668.1 mouse_genomes_project 15 5621587 5647738 - MGP_AJ_P0040508 Slc1a3 protein_coding protein_coding MGP_AJ_T0040509.1 MGP_AJ_G0021668.1 mouse_genomes_project 15 5623469 5647825 - Slc1a3 protein_coding retained_intron MGP_AJ_T0040510.1 MGP_AJ_G0021668.1 mouse_genomes_project 15 5644938 5647810 - Slc1a3 protein_coding retained_intron MGP_AJ_T0040511.1 MGP_AJ_G0021668.1 mouse_genomes_project 15 5646071 5646917 - Slc1a3 protein_coding processed_transcript MGP_AJ_T0042465.1 MGP_AJ_G0022276.1 mouse_genomes_project 15 96798648 96798963 + MGP_AJ_P0042465 Gm8973 protein_coding protein_coding MGP_AJ_T0042256.1 MGP_AJ_G0022207.1 mouse_genomes_project 15 88978948 89290669 - MGP_AJ_P0042256 Slc2a13 protein_coding protein_coding MGP_AJ_T0042257.1 MGP_AJ_G0022207.1 mouse_genomes_project 15 89113357 89129369 - Slc2a13 protein_coding processed_transcript MGP_AJ_T0042258.1 MGP_AJ_G0022207.1 mouse_genomes_project 15 89259671 89290602 - Slc2a13 protein_coding processed_transcript MGP_AJ_T0041109.1 MGP_AJ_G0021875.1 mouse_genomes_project 15 69618773 69654026 - MGP_AJ_P0041109 Kcnk9 protein_coding protein_coding MGP_AJ_T0042108.1 MGP_AJ_G0022170.1 mouse_genomes_project 15 86616331 86681436 - MGP_AJ_P0042108 Ttll8 protein_coding nonsense_mediated_decay MGP_AJ_T0042109.1 MGP_AJ_G0022170.1 mouse_genomes_project 15 86639546 86681428 - MGP_AJ_P0042109 Ttll8 protein_coding protein_coding MGP_AJ_T0042110.1 MGP_AJ_G0022170.1 mouse_genomes_project 15 86639602 86681077 - MGP_AJ_P0042110 Ttll8 protein_coding nonsense_mediated_decay MGP_AJ_T0042111.1 MGP_AJ_G0022170.1 mouse_genomes_project 15 86641317 86645517 - Ttll8 protein_coding retained_intron MGP_AJ_T0100843.1 MGP_AJ_G0038809.1 mouse_genomes_project 15 59728732 59728866 + Gm22521 snoRNA snoRNA MGP_AJ_T0010067.1 MGP_AJ_G0008189.1 mouse_genomes_project 15 79138224 79138278 + Gm23880 miRNA miRNA MGP_AJ_T0042606.1 MGP_AJ_G0022323.1 mouse_genomes_project 15 98704014 98717128 + MGP_AJ_P0042606 Slc4a8 protein_coding nonsense_mediated_decay MGP_AJ_T0042607.1 MGP_AJ_G0022323.1 mouse_genomes_project 15 98704033 98717008 + Slc4a8 protein_coding retained_intron MGP_AJ_T0042608.1 MGP_AJ_G0022323.1 mouse_genomes_project 15 98704075 98761429 + MGP_AJ_P0042608 Slc4a8 protein_coding protein_coding MGP_AJ_T0042609.1 MGP_AJ_G0022323.1 mouse_genomes_project 15 98748531 98752074 + Slc4a8 protein_coding retained_intron MGP_AJ_T0042610.1 MGP_AJ_G0022323.1 mouse_genomes_project 15 98757978 98761827 + Slc4a8 protein_coding processed_transcript MGP_AJ_T0042611.1 MGP_AJ_G0022323.1 mouse_genomes_project 15 98760151 98761598 + Slc4a8 protein_coding retained_intron MGP_AJ_T0041912.1 MGP_AJ_G0022100.1 mouse_genomes_project 15 79846668 79866117 + MGP_AJ_P0041912 Sept3 protein_coding protein_coding MGP_AJ_T0041913.1 MGP_AJ_G0022100.1 mouse_genomes_project 15 79846980 79863733 + MGP_AJ_P0041913 Sept3 protein_coding protein_coding MGP_AJ_T0040631.1 MGP_AJ_G0021703.1 mouse_genomes_project 15 15855309 16053045 + MGP_AJ_P0040631 Cdh10 protein_coding protein_coding MGP_AJ_T0040632.1 MGP_AJ_G0021703.1 mouse_genomes_project 15 15855320 15936970 + Cdh10 protein_coding retained_intron MGP_AJ_T0040633.1 MGP_AJ_G0021703.1 mouse_genomes_project 15 15855339 16005730 + Cdh10 protein_coding retained_intron MGP_AJ_T0040634.1 MGP_AJ_G0021703.1 mouse_genomes_project 15 15856715 16053045 + MGP_AJ_P0040634 Cdh10 protein_coding protein_coding MGP_AJ_T0040635.1 MGP_AJ_G0021703.1 mouse_genomes_project 15 15933454 16052491 + MGP_AJ_P0040635 Cdh10 protein_coding nonsense_mediated_decay MGP_AJ_T0040636.1 MGP_AJ_G0021703.1 mouse_genomes_project 15 16045794 16053045 + Cdh10 protein_coding retained_intron MGP_AJ_T0098921.1 MGP_AJ_G0036901.1 mouse_genomes_project 15 34319990 34320750 + Gm16137 sense_intronic sense_intronic MGP_AJ_T0003605.1 MGP_AJ_G0003265.1 mouse_genomes_project 15 63942230 63943731 + Gm17035 antisense antisense MGP_AJ_T0013095.1 MGP_AJ_G0011190.1 mouse_genomes_project 15 74084510 74084865 + processed_pseudogene processed_pseudogene MGP_AJ_T0006815.1 MGP_AJ_G0005612.1 mouse_genomes_project 15 98553650 98554621 - C330013E15Rik lincRNA lincRNA MGP_AJ_T0040691.1 MGP_AJ_G0021728.1 mouse_genomes_project 15 28621782 28642944 + MGP_AJ_P0040691 Cmbl protein_coding protein_coding MGP_AJ_T0040692.1 MGP_AJ_G0021728.1 mouse_genomes_project 15 28621896 28644724 + MGP_AJ_P0040692 Cmbl protein_coding protein_coding MGP_AJ_T0040693.1 MGP_AJ_G0021728.1 mouse_genomes_project 15 28625179 28640012 + MGP_AJ_P0040693 Cmbl protein_coding protein_coding MGP_AJ_T0013076.1 MGP_AJ_G0011171.1 mouse_genomes_project 15 38139699 38139870 + processed_pseudogene processed_pseudogene MGP_AJ_T0000944.1 MGP_AJ_G0000878.1 mouse_genomes_project 15 94446866 94447331 + TEC TEC MGP_AJ_T0010104.1 MGP_AJ_G0008226.1 mouse_genomes_project 15 101435349 101435420 - Mir6963 miRNA miRNA MGP_AJ_T0098406.1 MGP_AJ_G0036390.1 mouse_genomes_project 15 73191692 73194081 + pseudogene pseudogene MGP_AJ_T0040869.1 MGP_AJ_G0021795.1 mouse_genomes_project 15 44519706 45736618 - MGP_AJ_P0040869 Csmd3 protein_coding protein_coding MGP_AJ_T0040870.1 MGP_AJ_G0021795.1 mouse_genomes_project 15 44519707 45736674 - MGP_AJ_P0040870 Csmd3 protein_coding protein_coding MGP_AJ_T0040871.1 MGP_AJ_G0021795.1 mouse_genomes_project 15 44519791 45736748 - MGP_AJ_P0040871 Csmd3 protein_coding protein_coding MGP_AJ_T0040872.1 MGP_AJ_G0021795.1 mouse_genomes_project 15 44520786 44948376 - MGP_AJ_P0040872 Csmd3 protein_coding protein_coding MGP_AJ_T0040873.1 MGP_AJ_G0021795.1 mouse_genomes_project 15 44520789 44556139 - Csmd3 protein_coding retained_intron MGP_AJ_T0040874.1 MGP_AJ_G0021795.1 mouse_genomes_project 15 44570673 44575730 - Csmd3 protein_coding retained_intron MGP_AJ_T0040875.1 MGP_AJ_G0021795.1 mouse_genomes_project 15 44896208 44910285 - Csmd3 protein_coding retained_intron MGP_AJ_T0040876.1 MGP_AJ_G0021795.1 mouse_genomes_project 15 45199222 45736674 - Csmd3 protein_coding processed_transcript MGP_AJ_T0040877.1 MGP_AJ_G0021795.1 mouse_genomes_project 15 45229113 45736674 - Csmd3 protein_coding retained_intron MGP_AJ_T0041490.1 MGP_AJ_G0021977.1 mouse_genomes_project 15 74299544 74306840 - MGP_AJ_P0041490 Mb protein_coding protein_coding MGP_AJ_T0041491.1 MGP_AJ_G0021977.1 mouse_genomes_project 15 74299544 74334350 - MGP_AJ_P0041491 Mb protein_coding protein_coding MGP_AJ_T0041492.1 MGP_AJ_G0021977.1 mouse_genomes_project 15 74299544 74306780 - MGP_AJ_P0041492 Mb protein_coding protein_coding MGP_AJ_T0010091.1 MGP_AJ_G0008213.1 mouse_genomes_project 15 98589328 98589395 - Mir6961 miRNA miRNA MGP_AJ_T0098597.1 MGP_AJ_G0036581.1 mouse_genomes_project 15 36122562 36122670 - n-R5s39 rRNA rRNA MGP_AJ_T0042831.1 MGP_AJ_G0022402.1 mouse_genomes_project 15 101429211 101451401 - MGP_AJ_P0042831 Itga5 protein_coding protein_coding MGP_AJ_T0040629.1 MGP_AJ_G0021701.1 mouse_genomes_project 15 9976205 10119259 - MGP_AJ_P0040629 Cdh6 protein_coding protein_coding MGP_AJ_T0010063.1 MGP_AJ_G0008185.1 mouse_genomes_project 15 77523676 77523767 - Mir7213 miRNA miRNA MGP_AJ_T0041908.1 MGP_AJ_G0022098.1 mouse_genomes_project 15 79804845 79816515 - MGP_AJ_P0041908 Cenpm protein_coding protein_coding MGP_AJ_T0041909.1 MGP_AJ_G0022098.1 mouse_genomes_project 15 79804845 79816515 - MGP_AJ_P0041909 Cenpm protein_coding protein_coding MGP_AJ_T0041698.1 MGP_AJ_G0022044.1 mouse_genomes_project 15 77221188 77245470 + MGP_AJ_P0041698 Gtpbp1 protein_coding protein_coding MGP_AJ_T0013083.1 MGP_AJ_G0011178.1 mouse_genomes_project 15 51680683 51681665 - processed_pseudogene processed_pseudogene MGP_AJ_T0041382.1 MGP_AJ_G0021947.1 mouse_genomes_project 15 73657257 73659763 + MGP_AJ_P0041382 Hgh1 protein_coding protein_coding MGP_AJ_T0042414.1 MGP_AJ_G0022257.1 mouse_genomes_project 15 96257190 96259477 - MGP_AJ_P0042414 Lalba protein_coding protein_coding MGP_AJ_T0041331.1 MGP_AJ_G0021939.1 mouse_genomes_project 15 73581167 73583630 + MGP_AJ_P0041331 Smpd5 protein_coding protein_coding MGP_AJ_T0041332.1 MGP_AJ_G0021939.1 mouse_genomes_project 15 73581701 73582986 + MGP_AJ_P0041332 Smpd5 protein_coding nonsense_mediated_decay MGP_AJ_T0041333.1 MGP_AJ_G0021939.1 mouse_genomes_project 15 73581984 73583627 + Smpd5 protein_coding retained_intron MGP_AJ_T0041334.1 MGP_AJ_G0021939.1 mouse_genomes_project 15 73582042 73582607 + Smpd5 protein_coding retained_intron MGP_AJ_T0010042.1 MGP_AJ_G0008164.1 mouse_genomes_project 15 37130647 37130718 - Gm25958 miRNA miRNA MGP_AJ_T0041861.1 MGP_AJ_G0022083.1 mouse_genomes_project 15 79411545 79421606 - MGP_AJ_P0041861 Tob2 protein_coding protein_coding MGP_AJ_T0003622.1 MGP_AJ_G0003277.1 mouse_genomes_project 15 83870247 83871670 + Gm15569 antisense antisense MGP_AJ_T0042691.1 MGP_AJ_G0022363.1 mouse_genomes_project 15 100209937 100222836 + MGP_AJ_P0042691 Soat2 protein_coding protein_coding MGP_AJ_T0042692.1 MGP_AJ_G0022363.1 mouse_genomes_project 15 100210531 100222494 + MGP_AJ_P0042692 Soat2 protein_coding nonsense_mediated_decay MGP_AJ_T0041060.1 MGP_AJ_G0021861.1 mouse_genomes_project 15 62928220 62984270 - MGP_AJ_P0041060 Hhla1 protein_coding protein_coding MGP_AJ_T0040895.1 MGP_AJ_G0021803.1 mouse_genomes_project 15 49999120 50285852 - MGP_AJ_P0040895 Ext1 protein_coding protein_coding MGP_AJ_T0040896.1 MGP_AJ_G0021803.1 mouse_genomes_project 15 50003746 50285352 - MGP_AJ_P0040896 Ext1 protein_coding nonsense_mediated_decay MGP_AJ_T0040897.1 MGP_AJ_G0021803.1 mouse_genomes_project 15 50018511 50132804 - MGP_AJ_P0040897 Ext1 protein_coding protein_coding MGP_AJ_T0040898.1 MGP_AJ_G0021803.1 mouse_genomes_project 15 50025939 50043825 - Ext1 protein_coding retained_intron MGP_AJ_T0017443.1 MGP_AJ_G0015266.1 mouse_genomes_project 15 30281816 30282799 + processed_transcript processed_transcript MGP_AJ_T0040590.1 MGP_AJ_G0021693.1 mouse_genomes_project 15 8910926 8925649 - MGP_AJ_P0040590 Sub1 protein_coding unknown_likely_coding MGP_AJ_T0040591.1 MGP_AJ_G0021693.1 mouse_genomes_project 15 8915733 8925606 - Sub1 protein_coding retained_intron MGP_AJ_T0040592.1 MGP_AJ_G0021693.1 mouse_genomes_project 15 8916053 8925344 - Sub1 protein_coding processed_transcript MGP_AJ_T0041577.1 MGP_AJ_G0022009.1 mouse_genomes_project 15 76058335 76074291 - MGP_AJ_P0041577 Rac2 protein_coding protein_coding MGP_AJ_T0041246.1 MGP_AJ_G0021917.1 mouse_genomes_project 15 73036183 73123981 - MGP_AJ_P0041246 Zc3h3 protein_coding protein_coding MGP_AJ_T0041110.1 MGP_AJ_G0021876.1 mouse_genomes_project 15 69695707 70173353 - MGP_AJ_P0041110 Trappc9 protein_coding protein_coding MGP_AJ_T0041111.1 MGP_AJ_G0021876.1 mouse_genomes_project 15 69695707 70167025 - MGP_AJ_P0041111 Trappc9 protein_coding protein_coding MGP_AJ_T0041112.1 MGP_AJ_G0021876.1 mouse_genomes_project 15 69908893 70173353 - MGP_AJ_P0041112 Trappc9 protein_coding protein_coding MGP_AJ_T0041113.1 MGP_AJ_G0021876.1 mouse_genomes_project 15 69961985 70173353 - MGP_AJ_P0041113 Trappc9 protein_coding protein_coding MGP_AJ_T0042843.1 MGP_AJ_G0022406.1 mouse_genomes_project 15 101582650 101609393 + MGP_AJ_P0042843 Pde1b protein_coding protein_coding MGP_AJ_T0042394.1 MGP_AJ_G0022247.1 mouse_genomes_project 15 95928586 95938878 - MGP_AJ_P0042394 protein_coding protein_coding MGP_AJ_T0042395.1 MGP_AJ_G0022247.1 mouse_genomes_project 15 95931653 95938781 - protein_coding processed_transcript MGP_AJ_T0042356.1 MGP_AJ_G0022239.1 mouse_genomes_project 15 95533818 95574020 - MGP_AJ_P0042356 Hdac7 protein_coding protein_coding MGP_AJ_T0042357.1 MGP_AJ_G0022239.1 mouse_genomes_project 15 95533835 95574293 - MGP_AJ_P0042357 Hdac7 protein_coding protein_coding MGP_AJ_T0042358.1 MGP_AJ_G0022239.1 mouse_genomes_project 15 95533841 95535603 - Hdac7 protein_coding retained_intron MGP_AJ_T0042359.1 MGP_AJ_G0022239.1 mouse_genomes_project 15 95533866 95574020 - MGP_AJ_P0042359 Hdac7 protein_coding protein_coding MGP_AJ_T0042360.1 MGP_AJ_G0022239.1 mouse_genomes_project 15 95534854 95573903 - MGP_AJ_P0042360 Hdac7 protein_coding protein_coding MGP_AJ_T0042361.1 MGP_AJ_G0022239.1 mouse_genomes_project 15 95538956 95573995 - MGP_AJ_P0042361 Hdac7 protein_coding nonsense_mediated_decay MGP_AJ_T0042362.1 MGP_AJ_G0022239.1 mouse_genomes_project 15 95540768 95550333 - MGP_AJ_P0042362 Hdac7 protein_coding protein_coding MGP_AJ_T0042363.1 MGP_AJ_G0022239.1 mouse_genomes_project 15 95542429 95550684 - MGP_AJ_P0042363 Hdac7 protein_coding protein_coding MGP_AJ_T0041598.1 MGP_AJ_G0022019.1 mouse_genomes_project 15 76447684 76457307 + MGP_AJ_P0041598 Nol12 protein_coding protein_coding MGP_AJ_T0041599.1 MGP_AJ_G0022019.1 mouse_genomes_project 15 76447702 76453739 + MGP_AJ_P0041599 Nol12 protein_coding protein_coding MGP_AJ_T0041600.1 MGP_AJ_G0022019.1 mouse_genomes_project 15 76447746 76453671 + MGP_AJ_P0041600 Nol12 protein_coding protein_coding MGP_AJ_T0041601.1 MGP_AJ_G0022019.1 mouse_genomes_project 15 76447937 76450637 + MGP_AJ_P0041601 Nol12 protein_coding protein_coding MGP_AJ_T0041602.1 MGP_AJ_G0022019.1 mouse_genomes_project 15 76447959 76449335 + MGP_AJ_P0041602 Nol12 protein_coding protein_coding MGP_AJ_T0011381.1 MGP_AJ_G0009503.1 mouse_genomes_project 15 6989920 6990208 + Gm26350 misc_RNA misc_RNA MGP_AJ_T0099124.1 MGP_AJ_G0037094.1 mouse_genomes_project 15 86615480 86617215 - Gm20621 sense_overlapping sense_overlapping MGP_AJ_T0099125.1 MGP_AJ_G0037094.1 mouse_genomes_project 15 86616206 86617224 - Gm20621 sense_overlapping sense_overlapping MGP_AJ_T0099126.1 MGP_AJ_G0037094.1 mouse_genomes_project 15 86616211 86617182 - Gm20621 sense_overlapping sense_overlapping MGP_AJ_T0010047.1 MGP_AJ_G0008169.1 mouse_genomes_project 15 65343599 65343695 - Mir30b miRNA miRNA MGP_AJ_T0101958.1 MGP_AJ_G0039799.1 mouse_genomes_project 15 60775774 60868405 + transcribed_unprocessed_pseudogene processed_transcript MGP_AJ_T0011400.1 MGP_AJ_G0009522.1 mouse_genomes_project 15 101026245 101026343 + Gm27443 misc_RNA misc_RNA MGP_AJ_T0040741.1 MGP_AJ_G0021746.1 mouse_genomes_project 15 31955385 32245964 - MGP_AJ_P0040741 Stk3 protein_coding protein_coding MGP_AJ_T0040742.1 MGP_AJ_G0021746.1 mouse_genomes_project 15 31955562 32245908 - MGP_AJ_P0040742 Stk3 protein_coding protein_coding MGP_AJ_T0040743.1 MGP_AJ_G0021746.1 mouse_genomes_project 15 32040947 32079535 - Stk3 protein_coding retained_intron MGP_AJ_T0040744.1 MGP_AJ_G0021746.1 mouse_genomes_project 15 32166823 32245827 - MGP_AJ_P0040744 Stk3 protein_coding nonsense_mediated_decay MGP_AJ_T0011386.1 MGP_AJ_G0009508.1 mouse_genomes_project 15 55502918 55503219 + Gm23789 misc_RNA misc_RNA MGP_AJ_T0010085.1 MGP_AJ_G0008207.1 mouse_genomes_project 15 86910090 86910163 - Mir6958 miRNA miRNA MGP_AJ_T0010053.1 MGP_AJ_G0008175.1 mouse_genomes_project 15 73500353 73500416 - Mir1942 miRNA miRNA MGP_AJ_T0040535.1 MGP_AJ_G0021674.1 mouse_genomes_project 15 6240053 6291754 + MGP_AJ_P0040535 Ugt3a2 protein_coding protein_coding MGP_AJ_T0040536.1 MGP_AJ_G0021674.1 mouse_genomes_project 15 6245667 6273659 + Ugt3a2 protein_coding retained_intron MGP_AJ_T0100849.1 MGP_AJ_G0038815.1 mouse_genomes_project 15 77610262 77610356 - Snord83b snoRNA snoRNA MGP_AJ_T0041694.1 MGP_AJ_G0022041.1 mouse_genomes_project 15 77188118 77196411 + MGP_AJ_P0041694 Cby1 protein_coding protein_coding MGP_AJ_T0040861.1 MGP_AJ_G0021790.1 mouse_genomes_project 15 41405243 41414854 + MGP_AJ_P0040861 Eny2 protein_coding protein_coding MGP_AJ_T0040704.1 MGP_AJ_G0021733.1 mouse_genomes_project 15 29974918 30089002 + MGP_AJ_P0040704 Sdc2 protein_coding protein_coding MGP_AJ_T0040705.1 MGP_AJ_G0021733.1 mouse_genomes_project 15 29974965 29975492 + Sdc2 protein_coding processed_transcript MGP_AJ_T0040844.1 MGP_AJ_G0021781.1 mouse_genomes_project 15 38416826 38842617 + MGP_AJ_P0040844 Oxr1 protein_coding protein_coding MGP_AJ_T0040845.1 MGP_AJ_G0021781.1 mouse_genomes_project 15 38770321 38842622 + MGP_AJ_P0040845 Oxr1 protein_coding protein_coding MGP_AJ_T0040846.1 MGP_AJ_G0021781.1 mouse_genomes_project 15 38770321 38842617 + MGP_AJ_P0040846 Oxr1 protein_coding protein_coding MGP_AJ_T0040847.1 MGP_AJ_G0021781.1 mouse_genomes_project 15 38770802 38842617 + MGP_AJ_P0040847 Oxr1 protein_coding protein_coding MGP_AJ_T0040848.1 MGP_AJ_G0021781.1 mouse_genomes_project 15 38770810 38842620 + MGP_AJ_P0040848 Oxr1 protein_coding protein_coding MGP_AJ_T0040849.1 MGP_AJ_G0021781.1 mouse_genomes_project 15 38811493 38842617 + MGP_AJ_P0040849 Oxr1 protein_coding protein_coding MGP_AJ_T0041939.1 MGP_AJ_G0022115.1 mouse_genomes_project 15 80598786 80623502 - MGP_AJ_P0041939 Nfam1 protein_coding protein_coding MGP_AJ_T0041940.1 MGP_AJ_G0022115.1 mouse_genomes_project 15 80600801 80636814 - MGP_AJ_P0041940 Nfam1 protein_coding protein_coding MGP_AJ_T0100837.1 MGP_AJ_G0038803.1 mouse_genomes_project 15 49447719 49447851 + Gm23267 snoRNA snoRNA MGP_AJ_T0040984.1 MGP_AJ_G0021836.1 mouse_genomes_project 15 55781887 55782619 - MGP_AJ_P0040984 Ube2d4 protein_coding protein_coding MGP_AJ_T0040602.1 MGP_AJ_G0021695.1 mouse_genomes_project 15 9133921 9202455 + MGP_AJ_P0040602 Mtmr12 protein_coding protein_coding MGP_AJ_T0040603.1 MGP_AJ_G0021695.1 mouse_genomes_project 15 9133978 9202209 + MGP_AJ_P0040603 Mtmr12 protein_coding protein_coding MGP_AJ_T0040604.1 MGP_AJ_G0021695.1 mouse_genomes_project 15 9133997 9202334 + MGP_AJ_P0040604 Mtmr12 protein_coding nonsense_mediated_decay MGP_AJ_T0040605.1 MGP_AJ_G0021695.1 mouse_genomes_project 15 9134011 9202452 + MGP_AJ_P0040605 Mtmr12 protein_coding nonsense_mediated_decay MGP_AJ_T0040606.1 MGP_AJ_G0021695.1 mouse_genomes_project 15 9152839 9174822 + Mtmr12 protein_coding processed_transcript MGP_AJ_T0013075.1 MGP_AJ_G0011170.1 mouse_genomes_project 15 36152039 36152970 + processed_pseudogene processed_pseudogene MGP_AJ_T0003623.1 MGP_AJ_G0003278.1 mouse_genomes_project 15 87207613 87217617 + C230037L18Rik antisense antisense MGP_AJ_T0003624.1 MGP_AJ_G0003278.1 mouse_genomes_project 15 87207629 87210684 + C230037L18Rik antisense antisense MGP_AJ_T0003625.1 MGP_AJ_G0003278.1 mouse_genomes_project 15 87210509 87217552 + C230037L18Rik antisense antisense MGP_AJ_T0099584.1 MGP_AJ_G0037550.1 mouse_genomes_project 15 100518470 100518569 + Gm24128 snRNA snRNA MGP_AJ_T0099572.1 MGP_AJ_G0037538.1 mouse_genomes_project 15 83006573 83006765 - Gm23517 snRNA snRNA MGP_AJ_T0006761.1 MGP_AJ_G0005579.1 mouse_genomes_project 15 35817343 35965522 - lincRNA lincRNA MGP_AJ_T0003629.1 MGP_AJ_G0003282.1 mouse_genomes_project 15 96346738 96349020 + 9330020H09Rik antisense antisense MGP_AJ_T0040894.1 MGP_AJ_G0021802.1 mouse_genomes_project 15 49657996 49677984 + MGP_AJ_P0040894 Med30 protein_coding protein_coding MGP_AJ_T0042684.1 MGP_AJ_G0022360.1 mouse_genomes_project 15 100162308 100175911 + MGP_AJ_P0042684 Tns2 protein_coding protein_coding MGP_AJ_T0042685.1 MGP_AJ_G0022360.1 mouse_genomes_project 15 100162308 100175921 + MGP_AJ_P0042685 Tns2 protein_coding protein_coding MGP_AJ_T0042672.1 MGP_AJ_G0022349.1 mouse_genomes_project 15 99805354 99816607 - MGP_AJ_P0042672 Krt72 protein_coding protein_coding MGP_AJ_T0042673.1 MGP_AJ_G0022349.1 mouse_genomes_project 15 99805515 99807950 - Krt72 protein_coding processed_transcript MGP_AJ_T0100820.1 MGP_AJ_G0038786.1 mouse_genomes_project 15 24156916 24157047 - Gm23903 snoRNA snoRNA MGP_AJ_T0040856.1 MGP_AJ_G0021787.1 mouse_genomes_project 15 40847710 40851081 - MGP_AJ_P0040856 Tmem74 protein_coding protein_coding MGP_AJ_T0099123.1 MGP_AJ_G0037093.1 mouse_genomes_project 15 55716172 55717663 - Gm20712 sense_overlapping sense_overlapping MGP_AJ_T0042093.1 MGP_AJ_G0022163.1 mouse_genomes_project 15 85318232 85455309 + MGP_AJ_P0042093 Fam19a5 protein_coding protein_coding MGP_AJ_T0003635.1 MGP_AJ_G0003288.1 mouse_genomes_project 15 97768602 97770588 + Gm21917 antisense antisense MGP_AJ_T0003636.1 MGP_AJ_G0003288.1 mouse_genomes_project 15 97768602 97792427 + Gm21917 antisense antisense MGP_AJ_T0040977.1 MGP_AJ_G0021832.1 mouse_genomes_project 15 55254284 55324504 - MGP_AJ_P0040977 Anxa13 protein_coding unknown_likely_coding MGP_AJ_T0040978.1 MGP_AJ_G0021832.1 mouse_genomes_project 15 55254611 55285219 - MGP_AJ_P0040978 Anxa13 protein_coding protein_coding MGP_AJ_T0040670.1 MGP_AJ_G0021716.1 mouse_genomes_project 15 24555528 24682998 + MGP_AJ_P0040670 Ank protein_coding protein_coding MGP_AJ_T0040671.1 MGP_AJ_G0021716.1 mouse_genomes_project 15 24659553 24681252 + Ank protein_coding retained_intron MGP_AJ_T0041914.1 MGP_AJ_G0022101.1 mouse_genomes_project 15 79870627 79887483 + MGP_AJ_P0041914 Wbp2nl protein_coding protein_coding MGP_AJ_T0011402.1 MGP_AJ_G0009524.1 mouse_genomes_project 15 101028525 101028682 + Gm27535 misc_RNA misc_RNA MGP_AJ_T0040425.1 MGP_AJ_G0021645.1 mouse_genomes_project 15 921083 1055168 + MGP_AJ_P0040425 Oxct1 protein_coding protein_coding MGP_AJ_T0040426.1 MGP_AJ_G0021645.1 mouse_genomes_project 15 921384 1053787 + MGP_AJ_P0040426 Oxct1 protein_coding protein_coding MGP_AJ_T0040427.1 MGP_AJ_G0021645.1 mouse_genomes_project 15 942012 988331 + Oxct1 protein_coding processed_transcript MGP_AJ_T0040428.1 MGP_AJ_G0021645.1 mouse_genomes_project 15 1041556 1053804 + Oxct1 protein_coding processed_transcript MGP_AJ_T0040429.1 MGP_AJ_G0021645.1 mouse_genomes_project 15 1041845 1053783 + Oxct1 protein_coding processed_transcript MGP_AJ_T0040733.1 MGP_AJ_G0021743.1 mouse_genomes_project 15 31558254 31592101 + MGP_AJ_P0040733 Pop1 protein_coding protein_coding MGP_AJ_T0040734.1 MGP_AJ_G0021743.1 mouse_genomes_project 15 31558273 31592090 + MGP_AJ_P0040734 Pop1 protein_coding protein_coding MGP_AJ_T0040735.1 MGP_AJ_G0021743.1 mouse_genomes_project 15 31571933 31574219 + Pop1 protein_coding retained_intron MGP_AJ_T0040736.1 MGP_AJ_G0021743.1 mouse_genomes_project 15 31576196 31580028 + Pop1 protein_coding processed_transcript MGP_AJ_T0040737.1 MGP_AJ_G0021743.1 mouse_genomes_project 15 31577799 31590614 + Pop1 protein_coding retained_intron MGP_AJ_T0040738.1 MGP_AJ_G0021743.1 mouse_genomes_project 15 31587597 31590684 + Pop1 protein_coding retained_intron MGP_AJ_T0010035.1 MGP_AJ_G0008157.1 mouse_genomes_project 15 32748517 32748595 - Mir875 miRNA miRNA MGP_AJ_T0099546.1 MGP_AJ_G0037512.1 mouse_genomes_project 15 45493192 45493325 + Gm25007 snRNA snRNA MGP_AJ_T0006759.1 MGP_AJ_G0005577.1 mouse_genomes_project 15 35476576 35477896 + Gm26863 lincRNA lincRNA MGP_AJ_T0010036.1 MGP_AJ_G0008158.1 mouse_genomes_project 15 33319371 33319490 - Mir8097 miRNA miRNA MGP_AJ_T0040745.1 MGP_AJ_G0021747.1 mouse_genomes_project 15 32389083 32396288 + MGP_AJ_P0040745 Osr2 protein_coding protein_coding MGP_AJ_T0042546.1 MGP_AJ_G0022303.1 mouse_genomes_project 15 97754331 97768688 - MGP_AJ_P0042546 protein_coding protein_coding MGP_AJ_T0042547.1 MGP_AJ_G0022303.1 mouse_genomes_project 15 97754336 97807327 - MGP_AJ_P0042547 protein_coding protein_coding MGP_AJ_T0040821.1 MGP_AJ_G0021770.1 mouse_genomes_project 15 35888383 35907938 + MGP_AJ_P0040821 Baalc protein_coding protein_coding MGP_AJ_T0042141.1 MGP_AJ_G0022177.1 mouse_genomes_project 15 86845519 86850863 - Hdac10 protein_coding processed_transcript MGP_AJ_T0042142.1 MGP_AJ_G0022177.1 mouse_genomes_project 15 86845519 86850910 - MGP_AJ_P0042142 Hdac10 protein_coding protein_coding MGP_AJ_T0042143.1 MGP_AJ_G0022177.1 mouse_genomes_project 15 86845521 86850871 - Hdac10 protein_coding retained_intron MGP_AJ_T0042144.1 MGP_AJ_G0022177.1 mouse_genomes_project 15 86845521 86850861 - Hdac10 protein_coding retained_intron MGP_AJ_T0042145.1 MGP_AJ_G0022177.1 mouse_genomes_project 15 86845523 86850889 - Hdac10 protein_coding retained_intron MGP_AJ_T0042146.1 MGP_AJ_G0022177.1 mouse_genomes_project 15 86845784 86850658 - MGP_AJ_P0042146 Hdac10 protein_coding protein_coding MGP_AJ_T0042147.1 MGP_AJ_G0022177.1 mouse_genomes_project 15 86845886 86847895 - Hdac10 protein_coding processed_transcript MGP_AJ_T0042148.1 MGP_AJ_G0022177.1 mouse_genomes_project 15 86848188 86849700 - Hdac10 protein_coding processed_transcript MGP_AJ_T0041771.1 MGP_AJ_G0022065.1 mouse_genomes_project 15 78495583 78517272 + MGP_AJ_P0041771 Adsl protein_coding protein_coding MGP_AJ_T0041772.1 MGP_AJ_G0022065.1 mouse_genomes_project 15 78495584 78515332 + MGP_AJ_P0041772 Adsl protein_coding protein_coding MGP_AJ_T0041773.1 MGP_AJ_G0022065.1 mouse_genomes_project 15 78495597 78497206 + Adsl protein_coding retained_intron MGP_AJ_T0041774.1 MGP_AJ_G0022065.1 mouse_genomes_project 15 78495605 78515443 + MGP_AJ_P0041774 Adsl protein_coding nonsense_mediated_decay MGP_AJ_T0041775.1 MGP_AJ_G0022065.1 mouse_genomes_project 15 78495612 78515072 + MGP_AJ_P0041775 Adsl protein_coding protein_coding MGP_AJ_T0041776.1 MGP_AJ_G0022065.1 mouse_genomes_project 15 78495612 78510813 + MGP_AJ_P0041776 Adsl protein_coding nonsense_mediated_decay MGP_AJ_T0041777.1 MGP_AJ_G0022065.1 mouse_genomes_project 15 78495630 78512447 + MGP_AJ_P0041777 Adsl protein_coding nonsense_mediated_decay MGP_AJ_T0041778.1 MGP_AJ_G0022065.1 mouse_genomes_project 15 78495635 78502737 + Adsl protein_coding retained_intron MGP_AJ_T0041779.1 MGP_AJ_G0022065.1 mouse_genomes_project 15 78495870 78499137 + MGP_AJ_P0041779 Adsl protein_coding protein_coding MGP_AJ_T0041780.1 MGP_AJ_G0022065.1 mouse_genomes_project 15 78508056 78510688 + Adsl protein_coding retained_intron MGP_AJ_T0041781.1 MGP_AJ_G0022065.1 mouse_genomes_project 15 78510766 78515079 + MGP_AJ_P0041781 Adsl protein_coding nonsense_mediated_decay MGP_AJ_T0102347.1 MGP_AJ_G0040089.1 mouse_genomes_project 15 72489888 72492157 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0013080.1 MGP_AJ_G0011175.1 mouse_genomes_project 15 44643179 44647705 - processed_pseudogene processed_pseudogene MGP_AJ_T0042253.1 MGP_AJ_G0022206.1 mouse_genomes_project 15 88910256 88972141 + MGP_AJ_P0042253 CN725425 protein_coding protein_coding MGP_AJ_T0042254.1 MGP_AJ_G0022206.1 mouse_genomes_project 15 88910338 88972141 + MGP_AJ_P0042254 CN725425 protein_coding unknown_likely_coding MGP_AJ_T0042255.1 MGP_AJ_G0022206.1 mouse_genomes_project 15 88942693 88972132 + MGP_AJ_P0042255 CN725425 protein_coding protein_coding MGP_AJ_T0040767.1 MGP_AJ_G0021757.1 mouse_genomes_project 15 33688734 33704774 - MGP_AJ_P0040767 Pabpc1 protein_coding protein_coding MGP_AJ_T0040768.1 MGP_AJ_G0021757.1 mouse_genomes_project 15 33689049 33691093 - MGP_AJ_P0040768 Pabpc1 protein_coding protein_coding MGP_AJ_T0040769.1 MGP_AJ_G0021757.1 mouse_genomes_project 15 33689097 33691386 - Pabpc1 protein_coding processed_transcript MGP_AJ_T0040770.1 MGP_AJ_G0021757.1 mouse_genomes_project 15 33689097 33690500 - Pabpc1 protein_coding processed_transcript MGP_AJ_T0040771.1 MGP_AJ_G0021757.1 mouse_genomes_project 15 33689274 33690810 - Pabpc1 protein_coding processed_transcript MGP_AJ_T0040772.1 MGP_AJ_G0021757.1 mouse_genomes_project 15 33691374 33695419 - Pabpc1 protein_coding processed_transcript MGP_AJ_T0040773.1 MGP_AJ_G0021757.1 mouse_genomes_project 15 33696568 33704774 - Pabpc1 protein_coding processed_transcript MGP_AJ_T0041067.1 MGP_AJ_G0021866.1 mouse_genomes_project 15 63682254 63863290 + MGP_AJ_P0041067 Tg protein_coding protein_coding MGP_AJ_T0041068.1 MGP_AJ_G0021866.1 mouse_genomes_project 15 63700205 63863176 + MGP_AJ_P0041068 Tg protein_coding nonsense_mediated_decay MGP_AJ_T0041069.1 MGP_AJ_G0021866.1 mouse_genomes_project 15 63712632 63727273 + Tg protein_coding processed_transcript MGP_AJ_T0041070.1 MGP_AJ_G0021866.1 mouse_genomes_project 15 63716630 63863176 + MGP_AJ_P0041070 Tg protein_coding protein_coding MGP_AJ_T0041071.1 MGP_AJ_G0021866.1 mouse_genomes_project 15 63728026 63737385 + Tg protein_coding processed_transcript MGP_AJ_T0041072.1 MGP_AJ_G0021866.1 mouse_genomes_project 15 63728668 63741767 + Tg protein_coding processed_transcript MGP_AJ_T0041073.1 MGP_AJ_G0021866.1 mouse_genomes_project 15 63748603 63863290 + MGP_AJ_P0041073 Tg protein_coding protein_coding MGP_AJ_T0041079.1 MGP_AJ_G0021866.1 mouse_genomes_project 15 63811046 63863290 + Tg protein_coding processed_transcript MGP_AJ_T0017435.1 MGP_AJ_G0015263.1 mouse_genomes_project 15 914814 919193 - BC037032 processed_transcript TEC MGP_AJ_T0017436.1 MGP_AJ_G0015263.1 mouse_genomes_project 15 916386 922094 - BC037032 processed_transcript antisense MGP_AJ_T0017437.1 MGP_AJ_G0015263.1 mouse_genomes_project 15 917071 922103 - BC037032 processed_transcript antisense MGP_AJ_T0017438.1 MGP_AJ_G0015263.1 mouse_genomes_project 15 917675 922106 - BC037032 processed_transcript antisense MGP_AJ_T0017439.1 MGP_AJ_G0015263.1 mouse_genomes_project 15 918271 920777 - BC037032 processed_transcript antisense MGP_AJ_T0017440.1 MGP_AJ_G0015263.1 mouse_genomes_project 15 921097 921853 - BC037032 processed_transcript antisense MGP_AJ_T0041118.1 MGP_AJ_G0021879.1 mouse_genomes_project 15 70315838 70533266 - MGP_AJ_P0041118 Ptk2 protein_coding protein_coding MGP_AJ_T0041119.1 MGP_AJ_G0021879.1 mouse_genomes_project 15 70326479 70474175 - MGP_AJ_P0041119 Ptk2 protein_coding protein_coding MGP_AJ_T0041000.1 MGP_AJ_G0021846.1 mouse_genomes_project 15 56970001 56971754 - MGP_AJ_P0041000 4933412E24Rik protein_coding protein_coding MGP_AJ_T0006773.1 MGP_AJ_G0005588.1 mouse_genomes_project 15 58978552 59192378 + lincRNA lincRNA MGP_AJ_T0006774.1 MGP_AJ_G0005588.1 mouse_genomes_project 15 58978604 59201476 + lincRNA lincRNA MGP_AJ_T0006775.1 MGP_AJ_G0005588.1 mouse_genomes_project 15 58978613 59192374 + lincRNA lincRNA MGP_AJ_T0006776.1 MGP_AJ_G0005588.1 mouse_genomes_project 15 58978616 59321477 + lincRNA lincRNA MGP_AJ_T0006777.1 MGP_AJ_G0005588.1 mouse_genomes_project 15 58978627 59193823 + lincRNA lincRNA MGP_AJ_T0006778.1 MGP_AJ_G0005588.1 mouse_genomes_project 15 58979821 59192073 + lincRNA lincRNA MGP_AJ_T0006779.1 MGP_AJ_G0005588.1 mouse_genomes_project 15 59041077 59049665 + lincRNA lincRNA MGP_AJ_T0006780.1 MGP_AJ_G0005588.1 mouse_genomes_project 15 59122676 59193825 + lincRNA lincRNA MGP_AJ_T0006781.1 MGP_AJ_G0005588.1 mouse_genomes_project 15 59162549 59192376 + lincRNA lincRNA MGP_AJ_T0006782.1 MGP_AJ_G0005588.1 mouse_genomes_project 15 59166930 59185355 + lincRNA lincRNA MGP_AJ_T0041712.1 MGP_AJ_G0022047.1 mouse_genomes_project 15 77310210 77328528 - MGP_AJ_P0041712 Nptxr protein_coding protein_coding MGP_AJ_T0041713.1 MGP_AJ_G0022047.1 mouse_genomes_project 15 77310211 77328585 - MGP_AJ_P0041713 Nptxr protein_coding protein_coding MGP_AJ_T0041714.1 MGP_AJ_G0022047.1 mouse_genomes_project 15 77313119 77314855 - Nptxr protein_coding processed_transcript MGP_AJ_T0042828.1 MGP_AJ_G0022399.1 mouse_genomes_project 15 101356574 101383839 + MGP_AJ_P0042828 Copz1 protein_coding protein_coding MGP_AJ_T0010093.1 MGP_AJ_G0008215.1 mouse_genomes_project 15 99336364 99336447 + Mir1941 miRNA miRNA MGP_AJ_T0041043.1 MGP_AJ_G0021859.1 mouse_genomes_project 15 62790177 62794495 + Efr3a protein_coding processed_transcript MGP_AJ_T0041044.1 MGP_AJ_G0021859.1 mouse_genomes_project 15 62790183 62874533 + MGP_AJ_P0041044 Efr3a protein_coding protein_coding MGP_AJ_T0041045.1 MGP_AJ_G0021859.1 mouse_genomes_project 15 62790184 62793978 + Efr3a protein_coding processed_transcript MGP_AJ_T0041046.1 MGP_AJ_G0021859.1 mouse_genomes_project 15 62790184 62869975 + MGP_AJ_P0041046 Efr3a protein_coding protein_coding MGP_AJ_T0041047.1 MGP_AJ_G0021859.1 mouse_genomes_project 15 62790185 62832951 + Efr3a protein_coding processed_transcript MGP_AJ_T0041048.1 MGP_AJ_G0021859.1 mouse_genomes_project 15 62790189 62828610 + MGP_AJ_P0041048 Efr3a protein_coding protein_coding MGP_AJ_T0041049.1 MGP_AJ_G0021859.1 mouse_genomes_project 15 62790191 62825683 + Efr3a protein_coding retained_intron MGP_AJ_T0041050.1 MGP_AJ_G0021859.1 mouse_genomes_project 15 62790191 62823002 + MGP_AJ_P0041050 Efr3a protein_coding protein_coding MGP_AJ_T0041051.1 MGP_AJ_G0021859.1 mouse_genomes_project 15 62790983 62793984 + Efr3a protein_coding processed_transcript MGP_AJ_T0041052.1 MGP_AJ_G0021859.1 mouse_genomes_project 15 62850496 62857606 + Efr3a protein_coding retained_intron MGP_AJ_T0041053.1 MGP_AJ_G0021859.1 mouse_genomes_project 15 62856275 62858510 + Efr3a protein_coding retained_intron MGP_AJ_T0041054.1 MGP_AJ_G0021859.1 mouse_genomes_project 15 62858281 62867959 + Efr3a protein_coding retained_intron MGP_AJ_T0003597.1 MGP_AJ_G0003257.1 mouse_genomes_project 15 34449525 34450819 + Gm28221 antisense antisense MGP_AJ_T0013106.1 MGP_AJ_G0011201.1 mouse_genomes_project 15 88615484 88616303 + processed_pseudogene processed_pseudogene MGP_AJ_T0042703.1 MGP_AJ_G0022366.1 mouse_genomes_project 15 100275408 100291340 - MGP_AJ_P0042703 Itgb7 protein_coding protein_coding MGP_AJ_T0042704.1 MGP_AJ_G0022366.1 mouse_genomes_project 15 100284163 100291340 - MGP_AJ_P0042704 Itgb7 protein_coding protein_coding MGP_AJ_T0010039.1 MGP_AJ_G0008161.1 mouse_genomes_project 15 34453642 34453768 - Gm23654 miRNA miRNA MGP_AJ_T0100830.1 MGP_AJ_G0038796.1 mouse_genomes_project 15 32572266 32572403 + Gm24771 snoRNA snoRNA MGP_AJ_T0099543.1 MGP_AJ_G0037509.1 mouse_genomes_project 15 41409729 41409836 + Gm22392 snRNA snRNA MGP_AJ_T0040682.1 MGP_AJ_G0021723.1 mouse_genomes_project 15 28319158 28319575 + MGP_AJ_P0040682 protein_coding protein_coding MGP_AJ_T0041813.1 MGP_AJ_G0022072.1 mouse_genomes_project 15 78948078 78975809 + Xpnpep3 protein_coding retained_intron MGP_AJ_T0041814.1 MGP_AJ_G0022072.1 mouse_genomes_project 15 78948098 78964241 + Xpnpep3 protein_coding retained_intron MGP_AJ_T0041815.1 MGP_AJ_G0022072.1 mouse_genomes_project 15 78948124 79005493 + MGP_AJ_P0041815 Xpnpep3 protein_coding nonsense_mediated_decay MGP_AJ_T0041816.1 MGP_AJ_G0022072.1 mouse_genomes_project 15 78948125 78990887 + MGP_AJ_P0041816 Xpnpep3 protein_coding nonsense_mediated_decay MGP_AJ_T0041817.1 MGP_AJ_G0022072.1 mouse_genomes_project 15 78948152 79009917 + MGP_AJ_P0041817 Xpnpep3 protein_coding protein_coding MGP_AJ_T0041818.1 MGP_AJ_G0022072.1 mouse_genomes_project 15 78948161 78975393 + Xpnpep3 protein_coding processed_transcript MGP_AJ_T0041597.1 MGP_AJ_G0022018.1 mouse_genomes_project 15 76439650 76443229 + MGP_AJ_P0041597 Lgals1 protein_coding protein_coding MGP_AJ_T0042243.1 MGP_AJ_G0022203.1 mouse_genomes_project 15 88216730 88402289 - MGP_AJ_P0042243 Cpne8 protein_coding nonsense_mediated_decay MGP_AJ_T0042244.1 MGP_AJ_G0022203.1 mouse_genomes_project 15 88216731 88402350 - MGP_AJ_P0042244 Cpne8 protein_coding protein_coding MGP_AJ_T0042245.1 MGP_AJ_G0022203.1 mouse_genomes_project 15 88366524 88402183 - MGP_AJ_P0042245 Cpne8 protein_coding unknown_likely_coding MGP_AJ_T0042246.1 MGP_AJ_G0022203.1 mouse_genomes_project 15 88371143 88402294 - Cpne8 protein_coding retained_intron MGP_AJ_T0099552.1 MGP_AJ_G0037518.1 mouse_genomes_project 15 54144449 54144539 - Gm26178 snRNA snRNA MGP_AJ_T0042594.1 MGP_AJ_G0022320.1 mouse_genomes_project 15 98581650 98609586 - MGP_AJ_P0042594 Bin2 protein_coding protein_coding MGP_AJ_T0042595.1 MGP_AJ_G0022320.1 mouse_genomes_project 15 98581656 98609538 - MGP_AJ_P0042595 Bin2 protein_coding protein_coding MGP_AJ_T0042596.1 MGP_AJ_G0022320.1 mouse_genomes_project 15 98581656 98609560 - MGP_AJ_P0042596 Bin2 protein_coding protein_coding MGP_AJ_T0042597.1 MGP_AJ_G0022320.1 mouse_genomes_project 15 98585816 98609538 - MGP_AJ_P0042597 Bin2 protein_coding protein_coding MGP_AJ_T0042598.1 MGP_AJ_G0022320.1 mouse_genomes_project 15 98585912 98609558 - MGP_AJ_P0042598 Bin2 protein_coding protein_coding MGP_AJ_T0042599.1 MGP_AJ_G0022320.1 mouse_genomes_project 15 98585954 98591835 - Bin2 protein_coding processed_transcript MGP_AJ_T0042600.1 MGP_AJ_G0022320.1 mouse_genomes_project 15 98589302 98590894 - Bin2 protein_coding retained_intron MGP_AJ_T0040839.1 MGP_AJ_G0021778.1 mouse_genomes_project 15 36828230 36907455 - MGP_AJ_P0040839 Lrp12 protein_coding protein_coding MGP_AJ_T0040840.1 MGP_AJ_G0021778.1 mouse_genomes_project 15 36828230 36907249 - MGP_AJ_P0040840 Lrp12 protein_coding protein_coding MGP_AJ_T0040841.1 MGP_AJ_G0021778.1 mouse_genomes_project 15 36861312 36907167 - Lrp12 protein_coding retained_intron MGP_AJ_T0042581.1 MGP_AJ_G0022316.1 mouse_genomes_project 15 98427837 98494107 - MGP_AJ_P0042581 Tfcp2 protein_coding protein_coding MGP_AJ_T0042668.1 MGP_AJ_G0022345.1 mouse_genomes_project 15 99700270 99718522 - MGP_AJ_P0042668 Krt6a protein_coding protein_coding MGP_AJ_T0040761.1 MGP_AJ_G0021754.1 mouse_genomes_project 15 33319259 33366974 - MGP_AJ_P0040761 Rnf19a protein_coding protein_coding MGP_AJ_T0000934.1 MGP_AJ_G0000868.1 mouse_genomes_project 15 17270924 17272277 - TEC TEC MGP_AJ_T0100858.1 MGP_AJ_G0038824.1 mouse_genomes_project 15 97061360 97061493 - Gm25999 snoRNA snoRNA MGP_AJ_T0041770.1 MGP_AJ_G0022064.1 mouse_genomes_project 15 78249993 78487289 + MGP_AJ_P0041770 Tnrc6b protein_coding protein_coding MGP_AJ_T0006756.1 MGP_AJ_G0005574.1 mouse_genomes_project 15 34101933 34137632 + Gm26766 lincRNA lincRNA MGP_AJ_T0042746.1 MGP_AJ_G0022377.1 mouse_genomes_project 15 100533059 100564596 + MGP_AJ_P0042746 Pcbp2 protein_coding protein_coding MGP_AJ_T0042747.1 MGP_AJ_G0022377.1 mouse_genomes_project 15 100533059 100564596 + MGP_AJ_P0042747 Pcbp2 protein_coding protein_coding MGP_AJ_T0042748.1 MGP_AJ_G0022377.1 mouse_genomes_project 15 100533059 100564596 + MGP_AJ_P0042748 Pcbp2 protein_coding protein_coding MGP_AJ_T0042290.1 MGP_AJ_G0022215.1 mouse_genomes_project 15 91147922 91245651 + MGP_AJ_P0042290 Pphln1 protein_coding protein_coding MGP_AJ_T0042291.1 MGP_AJ_G0022215.1 mouse_genomes_project 15 91147922 91245651 + MGP_AJ_P0042291 Pphln1 protein_coding protein_coding MGP_AJ_T0042292.1 MGP_AJ_G0022215.1 mouse_genomes_project 15 91147922 91245651 + MGP_AJ_P0042292 Pphln1 protein_coding protein_coding MGP_AJ_T0042293.1 MGP_AJ_G0022215.1 mouse_genomes_project 15 91148036 91245236 + MGP_AJ_P0042293 Pphln1 protein_coding protein_coding MGP_AJ_T0042160.1 MGP_AJ_G0022183.1 mouse_genomes_project 15 87012664 87040177 - MGP_AJ_P0042160 Sbf1 protein_coding protein_coding MGP_AJ_T0042161.1 MGP_AJ_G0022183.1 mouse_genomes_project 15 87012711 87040121 - MGP_AJ_P0042161 Sbf1 protein_coding protein_coding MGP_AJ_T0042162.1 MGP_AJ_G0022183.1 mouse_genomes_project 15 87012714 87040137 - MGP_AJ_P0042162 Sbf1 protein_coding nonsense_mediated_decay MGP_AJ_T0042163.1 MGP_AJ_G0022183.1 mouse_genomes_project 15 87012715 87019664 - MGP_AJ_P0042163 Sbf1 protein_coding protein_coding MGP_AJ_T0042164.1 MGP_AJ_G0022183.1 mouse_genomes_project 15 87012984 87013387 - Sbf1 protein_coding retained_intron MGP_AJ_T0042165.1 MGP_AJ_G0022183.1 mouse_genomes_project 15 87014163 87019177 - Sbf1 protein_coding retained_intron MGP_AJ_T0042166.1 MGP_AJ_G0022183.1 mouse_genomes_project 15 87019367 87021018 - Sbf1 protein_coding retained_intron MGP_AJ_T0042167.1 MGP_AJ_G0022183.1 mouse_genomes_project 15 87024586 87025330 - Sbf1 protein_coding retained_intron MGP_AJ_T0042168.1 MGP_AJ_G0022183.1 mouse_genomes_project 15 87025424 87027500 - Sbf1 protein_coding retained_intron MGP_AJ_T0042169.1 MGP_AJ_G0022183.1 mouse_genomes_project 15 87027152 87028204 - MGP_AJ_P0042169 Sbf1 protein_coding nonsense_mediated_decay MGP_AJ_T0042170.1 MGP_AJ_G0022183.1 mouse_genomes_project 15 87027962 87029965 - Sbf1 protein_coding retained_intron MGP_AJ_T0042171.1 MGP_AJ_G0022183.1 mouse_genomes_project 15 87029757 87031487 - Sbf1 protein_coding retained_intron MGP_AJ_T0042172.1 MGP_AJ_G0022183.1 mouse_genomes_project 15 87030880 87032670 - MGP_AJ_P0042172 Sbf1 protein_coding protein_coding MGP_AJ_T0041493.1 MGP_AJ_G0021978.1 mouse_genomes_project 15 74328400 74340165 + MGP_AJ_P0041493 Apol6 protein_coding nonsense_mediated_decay MGP_AJ_T0041494.1 MGP_AJ_G0021978.1 mouse_genomes_project 15 74328746 74336212 + MGP_AJ_P0041494 Apol6 protein_coding protein_coding MGP_AJ_T0041495.1 MGP_AJ_G0021978.1 mouse_genomes_project 15 74328877 74334379 + MGP_AJ_P0041495 Apol6 protein_coding protein_coding MGP_AJ_T0041496.1 MGP_AJ_G0021978.1 mouse_genomes_project 15 74328947 74340974 + MGP_AJ_P0041496 Apol6 protein_coding protein_coding MGP_AJ_T0041497.1 MGP_AJ_G0021978.1 mouse_genomes_project 15 74328949 74335000 + MGP_AJ_P0041497 Apol6 protein_coding protein_coding MGP_AJ_T0041498.1 MGP_AJ_G0021978.1 mouse_genomes_project 15 74329158 74329910 + Apol6 protein_coding processed_transcript MGP_AJ_T0041499.1 MGP_AJ_G0021978.1 mouse_genomes_project 15 74336614 74339911 + Apol6 protein_coding processed_transcript MGP_AJ_T0041519.1 MGP_AJ_G0021989.1 mouse_genomes_project 15 75016566 75029660 - MGP_AJ_P0041519 Apol10b protein_coding protein_coding MGP_AJ_T0006785.1 MGP_AJ_G0005591.1 mouse_genomes_project 15 72243898 72246774 - Gm28502 lincRNA lincRNA MGP_AJ_T0041080.1 MGP_AJ_G0021868.1 mouse_genomes_project 15 63903764 63935828 + MGP_AJ_P0041080 Wisp1 protein_coding protein_coding MGP_AJ_T0041081.1 MGP_AJ_G0021868.1 mouse_genomes_project 15 63903831 63932704 + MGP_AJ_P0041081 Wisp1 protein_coding nonsense_mediated_decay MGP_AJ_T0041082.1 MGP_AJ_G0021868.1 mouse_genomes_project 15 63903952 63932079 + MGP_AJ_P0041082 Wisp1 protein_coding protein_coding MGP_AJ_T0041083.1 MGP_AJ_G0021868.1 mouse_genomes_project 15 63921788 63931859 + Wisp1 protein_coding processed_transcript MGP_AJ_T0042427.1 MGP_AJ_G0022261.1 mouse_genomes_project 15 96368802 96384363 - MGP_AJ_P0042427 Adcy6 protein_coding unknown_likely_coding MGP_AJ_T0042428.1 MGP_AJ_G0022261.1 mouse_genomes_project 15 96368810 96387472 - MGP_AJ_P0042428 Adcy6 protein_coding protein_coding MGP_AJ_T0041456.1 MGP_AJ_G0021965.1 mouse_genomes_project 15 73984076 73986961 + MGP_AJ_P0041456 Gpt protein_coding protein_coding MGP_AJ_T0040757.1 MGP_AJ_G0021751.1 mouse_genomes_project 15 33231891 33246717 - MGP_AJ_P0040757 Fbxo43 protein_coding protein_coding MGP_AJ_T0000938.1 MGP_AJ_G0000872.1 mouse_genomes_project 15 60460155 60471933 + TEC TEC MGP_AJ_T0100825.1 MGP_AJ_G0038791.1 mouse_genomes_project 15 28240791 28240925 - Gm26416 snoRNA snoRNA MGP_AJ_T0099581.1 MGP_AJ_G0037547.1 mouse_genomes_project 15 97636079 97636186 - Gm25897 snRNA snRNA MGP_AJ_T0099565.1 MGP_AJ_G0037531.1 mouse_genomes_project 15 73498843 73498948 - Gm25720 snRNA snRNA MGP_AJ_T0041965.1 MGP_AJ_G0022119.1 mouse_genomes_project 15 80767603 80788916 - MGP_AJ_P0041965 Cyb5r3 protein_coding protein_coding MGP_AJ_T0041966.1 MGP_AJ_G0022119.1 mouse_genomes_project 15 80771749 80786830 - MGP_AJ_P0041966 Cyb5r3 protein_coding protein_coding MGP_AJ_T0041967.1 MGP_AJ_G0022119.1 mouse_genomes_project 15 80775070 80786501 - MGP_AJ_P0041967 Cyb5r3 protein_coding protein_coding MGP_AJ_T0041542.1 MGP_AJ_G0021995.1 mouse_genomes_project 15 75423380 75552771 - MGP_AJ_P0041542 Cacng2 protein_coding protein_coding MGP_AJ_T0041277.1 MGP_AJ_G0021927.1 mouse_genomes_project 15 73262302 73264886 - MGP_AJ_P0041277 Ccdc166 protein_coding protein_coding MGP_AJ_T0041278.1 MGP_AJ_G0021927.1 mouse_genomes_project 15 73263197 73264873 - MGP_AJ_P0041278 Ccdc166 protein_coding protein_coding MGP_AJ_T0042729.1 MGP_AJ_G0022373.1 mouse_genomes_project 15 100416882 100426434 - MGP_AJ_P0042729 Sp7 protein_coding protein_coding MGP_AJ_T0017441.1 MGP_AJ_G0015264.1 mouse_genomes_project 15 4314287 4327810 + Gm16029 processed_transcript processed_transcript MGP_AJ_T0042632.1 MGP_AJ_G0022325.1 mouse_genomes_project 15 99014539 99018747 - MGP_AJ_P0042632 Fignl2 protein_coding protein_coding MGP_AJ_T0040855.1 MGP_AJ_G0021786.1 mouse_genomes_project 15 40451343 40496384 + MGP_AJ_P0040855 Emc2 protein_coding protein_coding MGP_AJ_T0003631.1 MGP_AJ_G0003284.1 mouse_genomes_project 15 97237456 97244989 + Nckap5los antisense antisense MGP_AJ_T0042667.1 MGP_AJ_G0022344.1 mouse_genomes_project 15 99685476 99718521 - MGP_AJ_P0042667 Krt6b protein_coding protein_coding MGP_AJ_T0040469.1 MGP_AJ_G0021658.1 mouse_genomes_project 15 3485554 3585208 + MGP_AJ_P0040469 Fyb protein_coding protein_coding MGP_AJ_T0040470.1 MGP_AJ_G0021658.1 mouse_genomes_project 15 3498872 3539976 + Fyb protein_coding retained_intron MGP_AJ_T0040471.1 MGP_AJ_G0021658.1 mouse_genomes_project 15 3504048 3554334 + MGP_AJ_P0040471 Fyb protein_coding protein_coding MGP_AJ_T0040472.1 MGP_AJ_G0021658.1 mouse_genomes_project 15 3538961 3551858 + Fyb protein_coding retained_intron MGP_AJ_T0040473.1 MGP_AJ_G0021658.1 mouse_genomes_project 15 3563274 3580473 + MGP_AJ_P0040473 Fyb protein_coding protein_coding MGP_AJ_T0040474.1 MGP_AJ_G0021658.1 mouse_genomes_project 15 3565647 3571445 + Fyb protein_coding retained_intron MGP_AJ_T0040475.1 MGP_AJ_G0021658.1 mouse_genomes_project 15 3580001 3582848 + Fyb protein_coding retained_intron MGP_AJ_T0042371.1 MGP_AJ_G0022242.1 mouse_genomes_project 15 95717120 95746211 - MGP_AJ_P0042371 Col2a1 protein_coding protein_coding MGP_AJ_T0042372.1 MGP_AJ_G0022242.1 mouse_genomes_project 15 95717120 95746173 - MGP_AJ_P0042372 Col2a1 protein_coding protein_coding MGP_AJ_T0042373.1 MGP_AJ_G0022242.1 mouse_genomes_project 15 95727823 95730435 - Col2a1 protein_coding retained_intron MGP_AJ_T0042374.1 MGP_AJ_G0022242.1 mouse_genomes_project 15 95729625 95731962 - Col2a1 protein_coding processed_transcript MGP_AJ_T0042375.1 MGP_AJ_G0022242.1 mouse_genomes_project 15 95736375 95740991 - Col2a1 protein_coding retained_intron MGP_AJ_T0042376.1 MGP_AJ_G0022242.1 mouse_genomes_project 15 95736526 95741220 - Col2a1 protein_coding processed_transcript MGP_AJ_T0042377.1 MGP_AJ_G0022242.1 mouse_genomes_project 15 95739877 95743413 - Col2a1 protein_coding processed_transcript MGP_AJ_T0042378.1 MGP_AJ_G0022242.1 mouse_genomes_project 15 95740084 95746151 - MGP_AJ_P0042378 Col2a1 protein_coding protein_coding MGP_AJ_T0042379.1 MGP_AJ_G0022242.1 mouse_genomes_project 15 95741769 95746173 - Col2a1 protein_coding retained_intron MGP_AJ_T0010064.1 MGP_AJ_G0008186.1 mouse_genomes_project 15 77614834 77614942 - Snord43 miRNA miRNA MGP_AJ_T0011392.1 MGP_AJ_G0009514.1 mouse_genomes_project 15 75866123 75866233 + Gm26329 misc_RNA misc_RNA MGP_AJ_T0003639.1 MGP_AJ_G0003291.1 mouse_genomes_project 15 98533719 98535582 + Gm27209 antisense antisense MGP_AJ_T0100846.1 MGP_AJ_G0038812.1 mouse_genomes_project 15 68891775 68891953 + Gm22519 snoRNA snoRNA MGP_AJ_T0042647.1 MGP_AJ_G0022330.1 mouse_genomes_project 15 99230473 99238344 + MGP_AJ_P0042647 Nr4a1 protein_coding protein_coding MGP_AJ_T0040496.1 MGP_AJ_G0021666.1 mouse_genomes_project 15 5084159 5195263 + MGP_AJ_P0040496 2410089E03Rik protein_coding protein_coding MGP_AJ_T0040497.1 MGP_AJ_G0021666.1 mouse_genomes_project 15 5084462 5158405 + MGP_AJ_P0040497 2410089E03Rik protein_coding unknown_likely_coding MGP_AJ_T0040498.1 MGP_AJ_G0021666.1 mouse_genomes_project 15 5084470 5158010 + MGP_AJ_P0040498 2410089E03Rik protein_coding unknown_likely_coding MGP_AJ_T0040499.1 MGP_AJ_G0021666.1 mouse_genomes_project 15 5101181 5102036 + 2410089E03Rik protein_coding retained_intron MGP_AJ_T0040500.1 MGP_AJ_G0021666.1 mouse_genomes_project 15 5109915 5118144 + 2410089E03Rik protein_coding retained_intron MGP_AJ_T0040501.1 MGP_AJ_G0021666.1 mouse_genomes_project 15 5132341 5135025 + 2410089E03Rik protein_coding retained_intron MGP_AJ_T0040502.1 MGP_AJ_G0021666.1 mouse_genomes_project 15 5170502 5176509 + 2410089E03Rik protein_coding retained_intron MGP_AJ_T0013100.1 MGP_AJ_G0011195.1 mouse_genomes_project 15 79230524 79231133 - processed_pseudogene processed_pseudogene MGP_AJ_T0000931.1 MGP_AJ_G0000865.1 mouse_genomes_project 15 4590878 4591254 - TEC TEC MGP_AJ_T0040620.1 MGP_AJ_G0021699.1 mouse_genomes_project 15 9741159 9757729 - MGP_AJ_P0040620 6030458C11Rik protein_coding protein_coding MGP_AJ_T0041935.1 MGP_AJ_G0022113.1 mouse_genomes_project 15 80376186 80390593 - MGP_AJ_P0041935 Cyp2d26 protein_coding unknown_likely_coding MGP_AJ_T0041936.1 MGP_AJ_G0022113.1 mouse_genomes_project 15 80376192 80390665 - MGP_AJ_P0041936 Cyp2d26 protein_coding protein_coding MGP_AJ_T0006746.1 MGP_AJ_G0005568.1 mouse_genomes_project 15 7650284 7661447 + lincRNA lincRNA MGP_AJ_T0042664.1 MGP_AJ_G0022341.1 mouse_genomes_project 15 99536033 99546611 - MGP_AJ_P0042664 Krt90 protein_coding protein_coding MGP_AJ_T0013093.1 MGP_AJ_G0011188.1 mouse_genomes_project 15 73248520 73249796 - processed_pseudogene processed_pseudogene MGP_AJ_T0099549.1 MGP_AJ_G0037515.1 mouse_genomes_project 15 49444952 49445056 + Gm23545 snRNA snRNA MGP_AJ_T0040887.1 MGP_AJ_G0021798.1 mouse_genomes_project 15 48804220 48811713 + MGP_AJ_P0040887 Utp23 protein_coding protein_coding MGP_AJ_T0040888.1 MGP_AJ_G0021798.1 mouse_genomes_project 15 48804269 48809461 + MGP_AJ_P0040888 Utp23 protein_coding protein_coding MGP_AJ_T0040889.1 MGP_AJ_G0021798.1 mouse_genomes_project 15 48804296 48809456 + MGP_AJ_P0040889 Utp23 protein_coding protein_coding MGP_AJ_T0040890.1 MGP_AJ_G0021798.1 mouse_genomes_project 15 48804533 48809455 + MGP_AJ_P0040890 Utp23 protein_coding protein_coding MGP_AJ_T0041400.1 MGP_AJ_G0021950.1 mouse_genomes_project 15 73742007 73766840 - MGP_AJ_P0041400 Bop1 protein_coding protein_coding MGP_AJ_T0003600.1 MGP_AJ_G0003260.1 mouse_genomes_project 15 54615370 54616184 - Gm16006 antisense antisense MGP_AJ_T0013094.1 MGP_AJ_G0011189.1 mouse_genomes_project 15 73434335 73434575 + processed_pseudogene processed_pseudogene MGP_AJ_T0099574.1 MGP_AJ_G0037540.1 mouse_genomes_project 15 86558898 86559005 + Gm23144 snRNA snRNA MGP_AJ_T0042316.1 MGP_AJ_G0022224.1 mouse_genomes_project 15 93524064 93527508 - MGP_AJ_P0042316 A130051J06Rik protein_coding protein_coding MGP_AJ_T0040539.1 MGP_AJ_G0021677.1 mouse_genomes_project 15 6493863 6662722 - MGP_AJ_P0040539 protein_coding protein_coding MGP_AJ_T0040540.1 MGP_AJ_G0021677.1 mouse_genomes_project 15 6493932 6662653 - MGP_AJ_P0040540 protein_coding unknown_likely_coding MGP_AJ_T0040541.1 MGP_AJ_G0021677.1 mouse_genomes_project 15 6577154 6662752 - MGP_AJ_P0040541 protein_coding protein_coding MGP_AJ_T0040542.1 MGP_AJ_G0021677.1 mouse_genomes_project 15 6600041 6662704 - MGP_AJ_P0040542 protein_coding protein_coding MGP_AJ_T0040543.1 MGP_AJ_G0021677.1 mouse_genomes_project 15 6619060 6662704 - MGP_AJ_P0040543 protein_coding protein_coding MGP_AJ_T0040544.1 MGP_AJ_G0021677.1 mouse_genomes_project 15 6619063 6662661 - MGP_AJ_P0040544 protein_coding protein_coding MGP_AJ_T0041929.1 MGP_AJ_G0022108.1 mouse_genomes_project 15 80144566 80148902 + MGP_AJ_P0041929 protein_coding protein_coding MGP_AJ_T0040942.1 MGP_AJ_G0021819.1 mouse_genomes_project 15 53573356 53602517 - MGP_AJ_P0040942 Has2 protein_coding protein_coding MGP_AJ_T0003638.1 MGP_AJ_G0003290.1 mouse_genomes_project 15 98524404 98530341 + Gm20680 antisense antisense MGP_AJ_T0042007.1 MGP_AJ_G0022131.1 mouse_genomes_project 15 81708865 81738501 - MGP_AJ_P0042007 Sult4a1 protein_coding protein_coding MGP_AJ_T0042330.1 MGP_AJ_G0022231.1 mouse_genomes_project 15 94515553 94515934 - MGP_AJ_P0042330 Gm8888 protein_coding protein_coding MGP_AJ_T0040465.1 MGP_AJ_G0021657.1 mouse_genomes_project 15 3365676 3420358 + MGP_AJ_P0040465 C9 protein_coding protein_coding MGP_AJ_T0040466.1 MGP_AJ_G0021657.1 mouse_genomes_project 15 3365721 3390338 + MGP_AJ_P0040466 C9 protein_coding nonsense_mediated_decay MGP_AJ_T0040467.1 MGP_AJ_G0021657.1 mouse_genomes_project 15 3411096 3413039 + C9 protein_coding retained_intron MGP_AJ_T0040468.1 MGP_AJ_G0021657.1 mouse_genomes_project 15 3411534 3420351 + MGP_AJ_P0040468 C9 protein_coding protein_coding MGP_AJ_T0041212.1 MGP_AJ_G0021909.1 mouse_genomes_project 15 72512697 72516548 + MGP_AJ_P0041212 protein_coding protein_coding MGP_AJ_T0041221.1 MGP_AJ_G0021909.1 mouse_genomes_project 15 72512981 72516549 + MGP_AJ_P0041221 protein_coding protein_coding MGP_AJ_T0010040.1 MGP_AJ_G0008162.1 mouse_genomes_project 15 35578141 35578216 - Mir6951 miRNA miRNA MGP_AJ_T0040913.1 MGP_AJ_G0021811.1 mouse_genomes_project 15 51938555 51995724 - MGP_AJ_P0040913 Taf2 protein_coding protein_coding MGP_AJ_T0041767.1 MGP_AJ_G0022061.1 mouse_genomes_project 15 77987285 78098808 - MGP_AJ_P0041767 Enthd1 protein_coding protein_coding MGP_AJ_T0040827.1 MGP_AJ_G0021773.1 mouse_genomes_project 15 36065697 36084108 - MGP_AJ_P0040827 Slc25a32 protein_coding protein_coding MGP_AJ_T0042025.1 MGP_AJ_G0022138.1 mouse_genomes_project 15 82200210 82204631 - MGP_AJ_P0042025 Ldoc1l protein_coding protein_coding MGP_AJ_T0003641.1 MGP_AJ_G0003293.1 mouse_genomes_project 15 99089997 99091701 - Gm16031 antisense antisense MGP_AJ_T0011382.1 MGP_AJ_G0009504.1 mouse_genomes_project 15 8894929 8895189 + Gm24074 misc_RNA misc_RNA MGP_AJ_T0003637.1 MGP_AJ_G0003289.1 mouse_genomes_project 15 97812421 97813545 - 2310068J16Rik antisense antisense MGP_AJ_T0041518.1 MGP_AJ_G0021988.1 mouse_genomes_project 15 74982218 74992105 - MGP_AJ_P0041518 1700025B11Rik protein_coding protein_coding MGP_AJ_T0041883.1 MGP_AJ_G0022090.1 mouse_genomes_project 15 79552737 79587213 + MGP_AJ_P0041883 Xrcc6 protein_coding protein_coding MGP_AJ_T0041890.1 MGP_AJ_G0022090.1 mouse_genomes_project 15 79581469 79605103 + MGP_AJ_P0041890 Xrcc6 protein_coding protein_coding MGP_AJ_T0041891.1 MGP_AJ_G0022090.1 mouse_genomes_project 15 79581532 79590288 + MGP_AJ_P0041891 Xrcc6 protein_coding protein_coding MGP_AJ_T0041892.1 MGP_AJ_G0022090.1 mouse_genomes_project 15 79581583 79590337 + MGP_AJ_P0041892 Xrcc6 protein_coding protein_coding MGP_AJ_T0041893.1 MGP_AJ_G0022090.1 mouse_genomes_project 15 79586921 79587569 + Xrcc6 protein_coding retained_intron MGP_AJ_T0041894.1 MGP_AJ_G0022090.1 mouse_genomes_project 15 79587614 79592409 + Xrcc6 protein_coding retained_intron MGP_AJ_T0041895.1 MGP_AJ_G0022090.1 mouse_genomes_project 15 79590039 79594244 + Xrcc6 protein_coding retained_intron MGP_AJ_T0041896.1 MGP_AJ_G0022090.1 mouse_genomes_project 15 79592716 79604812 + Xrcc6 protein_coding processed_transcript MGP_AJ_T0041897.1 MGP_AJ_G0022090.1 mouse_genomes_project 15 79593711 79602480 + Xrcc6 protein_coding retained_intron MGP_AJ_T0013063.1 MGP_AJ_G0011158.1 mouse_genomes_project 15 10412249 10413028 + processed_pseudogene processed_pseudogene MGP_AJ_T0040933.1 MGP_AJ_G0021817.1 mouse_genomes_project 15 52490936 52561009 + MGP_AJ_P0040933 Mtbp protein_coding protein_coding MGP_AJ_T0040934.1 MGP_AJ_G0021817.1 mouse_genomes_project 15 52491123 52545112 + MGP_AJ_P0040934 Mtbp protein_coding protein_coding MGP_AJ_T0040935.1 MGP_AJ_G0021817.1 mouse_genomes_project 15 52491263 52502606 + MGP_AJ_P0040935 Mtbp protein_coding nonsense_mediated_decay MGP_AJ_T0040936.1 MGP_AJ_G0021817.1 mouse_genomes_project 15 52510063 52561008 + MGP_AJ_P0040936 Mtbp protein_coding protein_coding MGP_AJ_T0040937.1 MGP_AJ_G0021817.1 mouse_genomes_project 15 52552189 52554541 + Mtbp protein_coding retained_intron MGP_AJ_T0040938.1 MGP_AJ_G0021817.1 mouse_genomes_project 15 52556054 52561007 + Mtbp protein_coding processed_transcript MGP_AJ_T0042010.1 MGP_AJ_G0022134.1 mouse_genomes_project 15 81827654 81849691 + MGP_AJ_P0042010 Samm50 protein_coding protein_coding MGP_AJ_T0042471.1 MGP_AJ_G0022281.1 mouse_genomes_project 15 96894217 96901959 + Dnajc22 protein_coding processed_transcript MGP_AJ_T0042472.1 MGP_AJ_G0022281.1 mouse_genomes_project 15 96900457 96906678 + MGP_AJ_P0042472 Dnajc22 protein_coding protein_coding MGP_AJ_T0013098.1 MGP_AJ_G0011193.1 mouse_genomes_project 15 77205310 77217223 - processed_pseudogene processed_pseudogene MGP_AJ_T0006767.1 MGP_AJ_G0005585.1 mouse_genomes_project 15 43267977 43313439 + 1700022A22Rik lincRNA lincRNA MGP_AJ_T0006768.1 MGP_AJ_G0005585.1 mouse_genomes_project 15 43267989 43297425 + 1700022A22Rik lincRNA lincRNA MGP_AJ_T0006769.1 MGP_AJ_G0005585.1 mouse_genomes_project 15 43268003 43313488 + 1700022A22Rik lincRNA lincRNA MGP_AJ_T0010061.1 MGP_AJ_G0008183.1 mouse_genomes_project 15 76994677 76994758 + Gm44302 miRNA miRNA MGP_AJ_T0042681.1 MGP_AJ_G0022357.1 mouse_genomes_project 15 100054560 100061943 - MGP_AJ_P0042681 Krt8 protein_coding protein_coding MGP_AJ_T0099547.1 MGP_AJ_G0037513.1 mouse_genomes_project 15 45859194 45859279 - Gm23185 snRNA snRNA MGP_AJ_T0040495.1 MGP_AJ_G0021665.1 mouse_genomes_project 15 5023887 5074740 + MGP_AJ_P0040495 Nup155 protein_coding protein_coding MGP_AJ_T0042440.1 MGP_AJ_G0022265.1 mouse_genomes_project 15 96491129 96510987 + MGP_AJ_P0042440 Ccdc65 protein_coding protein_coding MGP_AJ_T0013079.1 MGP_AJ_G0011174.1 mouse_genomes_project 15 42930583 42932255 - processed_pseudogene processed_pseudogene MGP_AJ_T0042441.1 MGP_AJ_G0022266.1 mouse_genomes_project 15 96512034 96516283 - MGP_AJ_P0042441 Fkbp11 protein_coding protein_coding MGP_AJ_T0040587.1 MGP_AJ_G0021690.1 mouse_genomes_project 15 7991964 8265770 + MGP_AJ_P0040587 Adamts12 protein_coding protein_coding MGP_AJ_T0010089.1 MGP_AJ_G0008211.1 mouse_genomes_project 15 96296567 96296684 - Mir1291 miRNA miRNA MGP_AJ_T0006763.1 MGP_AJ_G0005581.1 mouse_genomes_project 15 38735664 38770199 - Gm26854 lincRNA lincRNA MGP_AJ_T0101730.1 MGP_AJ_G0039667.1 mouse_genomes_project 15 30472714 30474706 - transcribed_processed_pseudogene processed_transcript MGP_AJ_T0101731.1 MGP_AJ_G0039667.1 mouse_genomes_project 15 30473935 30474669 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0042602.1 MGP_AJ_G0022322.1 mouse_genomes_project 15 98632352 98669854 - MGP_AJ_P0042602 Galnt6 protein_coding unknown_likely_coding MGP_AJ_T0042603.1 MGP_AJ_G0022322.1 mouse_genomes_project 15 98632356 98669854 - MGP_AJ_P0042603 Galnt6 protein_coding protein_coding MGP_AJ_T0042604.1 MGP_AJ_G0022322.1 mouse_genomes_project 15 98632358 98669854 - MGP_AJ_P0042604 Galnt6 protein_coding protein_coding MGP_AJ_T0042605.1 MGP_AJ_G0022322.1 mouse_genomes_project 15 98633407 98661068 - MGP_AJ_P0042605 Galnt6 protein_coding protein_coding MGP_AJ_T0041916.1 MGP_AJ_G0022103.1 mouse_genomes_project 15 79914187 79918515 + Fam109b protein_coding processed_transcript MGP_AJ_T0041918.1 MGP_AJ_G0022103.1 mouse_genomes_project 15 79915794 79918529 + Fam109b protein_coding processed_transcript MGP_AJ_T0041919.1 MGP_AJ_G0022103.1 mouse_genomes_project 15 79916099 79920981 + MGP_AJ_P0041919 Fam109b protein_coding protein_coding MGP_AJ_T0041921.1 MGP_AJ_G0022103.1 mouse_genomes_project 15 79916420 79920968 + MGP_AJ_P0041921 Fam109b protein_coding protein_coding MGP_AJ_T0041145.1 MGP_AJ_G0021885.1 mouse_genomes_project 15 70966234 70971582 + MGP_AJ_P0041145 Gm6569 protein_coding protein_coding MGP_AJ_T0099564.1 MGP_AJ_G0037530.1 mouse_genomes_project 15 73320345 73320503 + Gm23027 snRNA snRNA MGP_AJ_T0017459.1 MGP_AJ_G0015271.1 mouse_genomes_project 15 61101497 61104069 + Gm20717 processed_transcript processed_transcript MGP_AJ_T0042397.1 MGP_AJ_G0022249.1 mouse_genomes_project 15 96005654 96006980 - MGP_AJ_P0042397 H1fnt protein_coding protein_coding MGP_AJ_T0042577.1 MGP_AJ_G0022313.1 mouse_genomes_project 15 98346644 98351974 + MGP_AJ_P0042577 Gm5475 protein_coding protein_coding MGP_AJ_T0042578.1 MGP_AJ_G0022313.1 mouse_genomes_project 15 98347690 98352649 + MGP_AJ_P0042578 Gm5475 protein_coding protein_coding MGP_AJ_T0042051.1 MGP_AJ_G0022150.1 mouse_genomes_project 15 82991925 83125158 + MGP_AJ_P0042051 Atxn10 protein_coding protein_coding MGP_AJ_T0042052.1 MGP_AJ_G0022150.1 mouse_genomes_project 15 82992009 83125166 + MGP_AJ_P0042052 Atxn10 protein_coding unknown_likely_coding MGP_AJ_T0041871.1 MGP_AJ_G0022087.1 mouse_genomes_project 15 79500724 79514917 + MGP_AJ_P0041871 Csdc2 protein_coding protein_coding MGP_AJ_T0041872.1 MGP_AJ_G0022087.1 mouse_genomes_project 15 79500955 79510850 + MGP_AJ_P0041872 Csdc2 protein_coding protein_coding MGP_AJ_T0041873.1 MGP_AJ_G0022087.1 mouse_genomes_project 15 79509713 79510868 + Csdc2 protein_coding processed_transcript MGP_AJ_T0041874.1 MGP_AJ_G0022087.1 mouse_genomes_project 15 79510941 79514910 + Csdc2 protein_coding retained_intron MGP_AJ_T0003627.1 MGP_AJ_G0003280.1 mouse_genomes_project 15 95505093 95507255 + Rapgef3os2 antisense antisense MGP_AJ_T0042548.1 MGP_AJ_G0022304.1 mouse_genomes_project 15 97813223 97855830 + MGP_AJ_P0042548 Larp4 protein_coding unknown_likely_coding MGP_AJ_T0011379.1 MGP_AJ_G0009501.1 mouse_genomes_project 15 682808 683078 + Gm23228 misc_RNA misc_RNA MGP_AJ_T0042106.1 MGP_AJ_G0022168.1 mouse_genomes_project 15 86543251 86550280 + MGP_AJ_P0042106 Creld2 protein_coding protein_coding MGP_AJ_T0042195.1 MGP_AJ_G0022189.1 mouse_genomes_project 15 87099153 87104960 - MGP_AJ_P0042195 Tymp protein_coding protein_coding MGP_AJ_T0006804.1 MGP_AJ_G0005606.1 mouse_genomes_project 15 93792719 93819952 - D030018L15Rik lincRNA lincRNA MGP_AJ_T0006805.1 MGP_AJ_G0005606.1 mouse_genomes_project 15 93792719 93821245 - D030018L15Rik lincRNA lincRNA MGP_AJ_T0006806.1 MGP_AJ_G0005606.1 mouse_genomes_project 15 93815155 93821371 - D030018L15Rik lincRNA lincRNA MGP_AJ_T0040762.1 MGP_AJ_G0021755.1 mouse_genomes_project 15 33570717 33589837 - MGP_AJ_P0040762 Ankrd46 protein_coding protein_coding MGP_AJ_T0100816.1 MGP_AJ_G0038782.1 mouse_genomes_project 15 12813750 12813878 + Gm25550 snoRNA snoRNA MGP_AJ_T0040411.1 MGP_AJ_G0021642.1 mouse_genomes_project 15 181823 454553 - MGP_AJ_P0040411 Ghr protein_coding protein_coding MGP_AJ_T0040412.1 MGP_AJ_G0021642.1 mouse_genomes_project 15 183072 453165 - MGP_AJ_P0040412 Ghr protein_coding protein_coding MGP_AJ_T0040413.1 MGP_AJ_G0021642.1 mouse_genomes_project 15 191588 454511 - MGP_AJ_P0040413 Ghr protein_coding protein_coding MGP_AJ_T0040414.1 MGP_AJ_G0021642.1 mouse_genomes_project 15 191602 337834 - MGP_AJ_P0040414 Ghr protein_coding protein_coding MGP_AJ_T0040415.1 MGP_AJ_G0021642.1 mouse_genomes_project 15 197486 453919 - MGP_AJ_P0040415 Ghr protein_coding protein_coding MGP_AJ_T0040416.1 MGP_AJ_G0021642.1 mouse_genomes_project 15 203716 454511 - Ghr protein_coding processed_transcript MGP_AJ_T0040417.1 MGP_AJ_G0021642.1 mouse_genomes_project 15 207876 454535 - Ghr protein_coding retained_intron MGP_AJ_T0040418.1 MGP_AJ_G0021642.1 mouse_genomes_project 15 209158 454534 - Ghr protein_coding processed_transcript MGP_AJ_T0040419.1 MGP_AJ_G0021642.1 mouse_genomes_project 15 246212 454815 - Ghr protein_coding retained_intron MGP_AJ_T0040420.1 MGP_AJ_G0021642.1 mouse_genomes_project 15 418128 454510 - Ghr protein_coding processed_transcript MGP_AJ_T0100844.1 MGP_AJ_G0038810.1 mouse_genomes_project 15 66437798 66437930 - Gm24232 snoRNA snoRNA MGP_AJ_T0017478.1 MGP_AJ_G0015283.1 mouse_genomes_project 15 87254778 87258360 - Gm15609 processed_transcript processed_transcript MGP_AJ_T0100826.1 MGP_AJ_G0038792.1 mouse_genomes_project 15 29314711 29314782 - Snord123 snoRNA snoRNA MGP_AJ_T0102353.1 MGP_AJ_G0040095.1 mouse_genomes_project 15 72650971 72657883 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0040828.1 MGP_AJ_G0021774.1 mouse_genomes_project 15 36084256 36123039 + MGP_AJ_P0040828 Dcaf13 protein_coding protein_coding MGP_AJ_T0041210.1 MGP_AJ_G0021907.1 mouse_genomes_project 15 72512680 72516557 + MGP_AJ_P0041210 protein_coding protein_coding MGP_AJ_T0041213.1 MGP_AJ_G0021907.1 mouse_genomes_project 15 72512697 72516101 + MGP_AJ_P0041213 protein_coding protein_coding MGP_AJ_T0041214.1 MGP_AJ_G0021907.1 mouse_genomes_project 15 72512697 72516553 + MGP_AJ_P0041214 protein_coding protein_coding MGP_AJ_T0041215.1 MGP_AJ_G0021907.1 mouse_genomes_project 15 72512706 72516045 + MGP_AJ_P0041215 protein_coding protein_coding MGP_AJ_T0041216.1 MGP_AJ_G0021907.1 mouse_genomes_project 15 72512722 72516243 + MGP_AJ_P0041216 protein_coding protein_coding MGP_AJ_T0041219.1 MGP_AJ_G0021907.1 mouse_genomes_project 15 72512862 72515751 + MGP_AJ_P0041219 protein_coding protein_coding MGP_AJ_T0006800.1 MGP_AJ_G0005602.1 mouse_genomes_project 15 83305563 83311690 + D130051D11Rik lincRNA lincRNA MGP_AJ_T0100842.1 MGP_AJ_G0038808.1 mouse_genomes_project 15 58297546 58297680 - Gm24696 snoRNA snoRNA MGP_AJ_T0040537.1 MGP_AJ_G0021675.1 mouse_genomes_project 15 6354635 6381450 + MGP_AJ_P0040537 Capsl protein_coding protein_coding MGP_AJ_T0042315.1 MGP_AJ_G0022223.1 mouse_genomes_project 15 93361325 93394322 - MGP_AJ_P0042315 Dbx2 protein_coding protein_coding MGP_AJ_T0042047.1 MGP_AJ_G0022148.1 mouse_genomes_project 15 82778174 82790648 + MGP_AJ_P0042047 Ribc2 protein_coding protein_coding MGP_AJ_T0040859.1 MGP_AJ_G0021789.1 mouse_genomes_project 15 41348376 41404910 - MGP_AJ_P0040859 Nudcd1 protein_coding unknown_likely_coding MGP_AJ_T0040860.1 MGP_AJ_G0021789.1 mouse_genomes_project 15 41348379 41405440 - MGP_AJ_P0040860 Nudcd1 protein_coding protein_coding MGP_AJ_T0010072.1 MGP_AJ_G0008194.1 mouse_genomes_project 15 80191843 80191903 - Gm27742 miRNA miRNA MGP_AJ_T0041672.1 MGP_AJ_G0022034.1 mouse_genomes_project 15 76879519 76923273 - MGP_AJ_P0041672 Tmem184b protein_coding protein_coding MGP_AJ_T0041673.1 MGP_AJ_G0022034.1 mouse_genomes_project 15 76879519 76922889 - MGP_AJ_P0041673 Tmem184b protein_coding protein_coding MGP_AJ_T0099561.1 MGP_AJ_G0037527.1 mouse_genomes_project 15 69597054 69597116 - Gm24390 snRNA snRNA MGP_AJ_T0041697.1 MGP_AJ_G0022043.1 mouse_genomes_project 15 77203479 77218177 - MGP_AJ_P0041697 Josd1 protein_coding protein_coding MGP_AJ_T0041444.1 MGP_AJ_G0021962.1 mouse_genomes_project 15 73948047 73955354 + MGP_AJ_P0041444 Kifc2 protein_coding protein_coding MGP_AJ_T0042669.1 MGP_AJ_G0022346.1 mouse_genomes_project 15 99734064 99739834 - MGP_AJ_P0042669 Krt5 protein_coding protein_coding MGP_AJ_T0041757.1 MGP_AJ_G0022057.1 mouse_genomes_project 15 77766468 77785564 + MGP_AJ_P0041757 Mief1 protein_coding unknown_likely_coding MGP_AJ_T0041554.1 MGP_AJ_G0022001.1 mouse_genomes_project 15 75875812 75887143 - MGP_AJ_P0041554 Tex33 protein_coding protein_coding MGP_AJ_T0041555.1 MGP_AJ_G0022001.1 mouse_genomes_project 15 75875812 75894264 - MGP_AJ_P0041555 Tex33 protein_coding protein_coding MGP_AJ_T0041556.1 MGP_AJ_G0022001.1 mouse_genomes_project 15 75875812 75894264 - MGP_AJ_P0041556 Tex33 protein_coding protein_coding MGP_AJ_T0041344.1 MGP_AJ_G0021941.1 mouse_genomes_project 15 73615434 73618718 + MGP_AJ_P0041344 Exosc4 protein_coding protein_coding MGP_AJ_T0041345.1 MGP_AJ_G0021941.1 mouse_genomes_project 15 73615628 73617135 + Exosc4 protein_coding processed_transcript MGP_AJ_T0042062.1 MGP_AJ_G0022154.1 mouse_genomes_project 15 83475430 83480156 - MGP_AJ_P0042062 Cdpf1 protein_coding protein_coding MGP_AJ_T0042063.1 MGP_AJ_G0022154.1 mouse_genomes_project 15 83475658 83480114 - MGP_AJ_P0042063 Cdpf1 protein_coding protein_coding MGP_AJ_T0042064.1 MGP_AJ_G0022154.1 mouse_genomes_project 15 83475702 83480104 - MGP_AJ_P0042064 Cdpf1 protein_coding protein_coding MGP_AJ_T0042065.1 MGP_AJ_G0022154.1 mouse_genomes_project 15 83475705 83479550 - MGP_AJ_P0042065 Cdpf1 protein_coding protein_coding MGP_AJ_T0042066.1 MGP_AJ_G0022154.1 mouse_genomes_project 15 83475715 83480157 - MGP_AJ_P0042066 Cdpf1 protein_coding protein_coding MGP_AJ_T0042067.1 MGP_AJ_G0022154.1 mouse_genomes_project 15 83476702 83480119 - MGP_AJ_P0042067 Cdpf1 protein_coding protein_coding MGP_AJ_T0040442.1 MGP_AJ_G0021651.1 mouse_genomes_project 15 2032294 2034822 + MGP_AJ_P0040442 Rpl37 protein_coding protein_coding MGP_AJ_T0041904.1 MGP_AJ_G0022094.1 mouse_genomes_project 15 79694283 79708597 + MGP_AJ_P0041904 Ccdc134 protein_coding protein_coding MGP_AJ_T0042792.1 MGP_AJ_G0022385.1 mouse_genomes_project 15 100780906 100796306 - MGP_AJ_P0042792 Calcoco1 protein_coding protein_coding MGP_AJ_T0042793.1 MGP_AJ_G0022385.1 mouse_genomes_project 15 100781099 100784030 - MGP_AJ_P0042793 Calcoco1 protein_coding protein_coding MGP_AJ_T0042794.1 MGP_AJ_G0022385.1 mouse_genomes_project 15 100781712 100796259 - MGP_AJ_P0042794 Calcoco1 protein_coding protein_coding MGP_AJ_T0042795.1 MGP_AJ_G0022385.1 mouse_genomes_project 15 100784352 100789924 - Calcoco1 protein_coding retained_intron MGP_AJ_T0040822.1 MGP_AJ_G0021771.1 mouse_genomes_project 15 35965616 36004522 + MGP_AJ_P0040822 Fzd6 protein_coding protein_coding MGP_AJ_T0040823.1 MGP_AJ_G0021771.1 mouse_genomes_project 15 35965669 36004522 + MGP_AJ_P0040823 Fzd6 protein_coding protein_coding MGP_AJ_T0042335.1 MGP_AJ_G0022236.1 mouse_genomes_project 15 95450633 95471021 - MGP_AJ_P0042335 Endou protein_coding protein_coding MGP_AJ_T0042336.1 MGP_AJ_G0022236.1 mouse_genomes_project 15 95450633 95460766 - MGP_AJ_P0042336 Endou protein_coding protein_coding MGP_AJ_T0041769.1 MGP_AJ_G0022063.1 mouse_genomes_project 15 78210619 78239104 + MGP_AJ_P0041769 Fam83f protein_coding protein_coding MGP_AJ_T0042533.1 MGP_AJ_G0022299.1 mouse_genomes_project 15 97533402 97540887 + MGP_AJ_P0042533 Gpd1 protein_coding protein_coding MGP_AJ_T0042534.1 MGP_AJ_G0022299.1 mouse_genomes_project 15 97533466 97539674 + MGP_AJ_P0042534 Gpd1 protein_coding protein_coding MGP_AJ_T0042535.1 MGP_AJ_G0022299.1 mouse_genomes_project 15 97535883 97537929 + Gpd1 protein_coding retained_intron MGP_AJ_T0042157.1 MGP_AJ_G0022182.1 mouse_genomes_project 15 86936253 87010589 + MGP_AJ_P0042157 Ppp6r2 protein_coding unknown_likely_coding MGP_AJ_T0042158.1 MGP_AJ_G0022182.1 mouse_genomes_project 15 86936264 87007561 + MGP_AJ_P0042158 Ppp6r2 protein_coding unknown_likely_coding MGP_AJ_T0042159.1 MGP_AJ_G0022182.1 mouse_genomes_project 15 86977268 87010704 + MGP_AJ_P0042159 Ppp6r2 protein_coding protein_coding MGP_AJ_T0042398.1 MGP_AJ_G0022250.1 mouse_genomes_project 15 96039500 96050226 - MGP_AJ_P0042398 Zfp641 protein_coding protein_coding MGP_AJ_T0042399.1 MGP_AJ_G0022250.1 mouse_genomes_project 15 96040034 96050179 - MGP_AJ_P0042399 Zfp641 protein_coding protein_coding MGP_AJ_T0042474.1 MGP_AJ_G0022283.1 mouse_genomes_project 15 97029820 97047394 + MGP_AJ_P0042474 Kcnh3 protein_coding protein_coding MGP_AJ_T0041841.1 MGP_AJ_G0022078.1 mouse_genomes_project 15 79234550 79250231 - MGP_AJ_P0041841 Chadl protein_coding nonsense_mediated_decay MGP_AJ_T0041844.1 MGP_AJ_G0022078.1 mouse_genomes_project 15 79242419 79253490 - MGP_AJ_P0041844 Chadl protein_coding protein_coding MGP_AJ_T0041845.1 MGP_AJ_G0022078.1 mouse_genomes_project 15 79242435 79250410 - MGP_AJ_P0041845 Chadl protein_coding nonsense_mediated_decay MGP_AJ_T0010074.1 MGP_AJ_G0008196.1 mouse_genomes_project 15 80368179 80368239 - Gm27618 miRNA miRNA MGP_AJ_T0010027.1 MGP_AJ_G0008149.1 mouse_genomes_project 15 9099146 9099229 + Mir1898 miRNA miRNA MGP_AJ_T0041135.1 MGP_AJ_G0021882.1 mouse_genomes_project 15 70823740 70837292 - MGP_AJ_P0041135 Gpr20 protein_coding protein_coding MGP_AJ_T0041181.1 MGP_AJ_G0021899.1 mouse_genomes_project 15 71941890 71947823 - MGP_AJ_P0041181 Gml protein_coding protein_coding MGP_AJ_T0100815.1 MGP_AJ_G0038781.1 mouse_genomes_project 15 8280398 8280525 - Gm24844 snoRNA snoRNA MGP_AJ_T0041557.1 MGP_AJ_G0022002.1 mouse_genomes_project 15 75897907 75904205 - MGP_AJ_P0041557 Tst protein_coding protein_coding MGP_AJ_T0041172.1 MGP_AJ_G0021894.1 mouse_genomes_project 15 71866596 71870526 - MGP_AJ_P0041172 Slurp2 protein_coding protein_coding MGP_AJ_T0041185.1 MGP_AJ_G0021901.1 mouse_genomes_project 15 72013996 72036768 - 2010109I03Rik protein_coding processed_transcript MGP_AJ_T0041186.1 MGP_AJ_G0021901.1 mouse_genomes_project 15 72015052 72018961 - MGP_AJ_P0041186 2010109I03Rik protein_coding protein_coding MGP_AJ_T0042033.1 MGP_AJ_G0022141.1 mouse_genomes_project 15 82428578 82498691 - MGP_AJ_P0042033 Phf21b protein_coding protein_coding MGP_AJ_T0042034.1 MGP_AJ_G0022141.1 mouse_genomes_project 15 82428579 82430649 - Phf21b protein_coding processed_transcript MGP_AJ_T0042035.1 MGP_AJ_G0022141.1 mouse_genomes_project 15 82428581 82499630 - MGP_AJ_P0042035 Phf21b protein_coding protein_coding MGP_AJ_T0042036.1 MGP_AJ_G0022141.1 mouse_genomes_project 15 82429330 82499332 - MGP_AJ_P0042036 Phf21b protein_coding nonsense_mediated_decay MGP_AJ_T0042037.1 MGP_AJ_G0022141.1 mouse_genomes_project 15 82430570 82434648 - Phf21b protein_coding retained_intron MGP_AJ_T0042038.1 MGP_AJ_G0022141.1 mouse_genomes_project 15 82437644 82446541 - Phf21b protein_coding retained_intron MGP_AJ_T0042222.1 MGP_AJ_G0022198.1 mouse_genomes_project 15 87233495 87294967 + MGP_AJ_P0042222 Shank3 protein_coding protein_coding MGP_AJ_T0042223.1 MGP_AJ_G0022198.1 mouse_genomes_project 15 87233757 87294967 + MGP_AJ_P0042223 Shank3 protein_coding protein_coding MGP_AJ_T0042224.1 MGP_AJ_G0022198.1 mouse_genomes_project 15 87234023 87237322 + Shank3 protein_coding processed_transcript MGP_AJ_T0042225.1 MGP_AJ_G0022198.1 mouse_genomes_project 15 87235183 87294965 + MGP_AJ_P0042225 Shank3 protein_coding protein_coding MGP_AJ_T0042226.1 MGP_AJ_G0022198.1 mouse_genomes_project 15 87259004 87269101 + Shank3 protein_coding processed_transcript MGP_AJ_T0042227.1 MGP_AJ_G0022198.1 mouse_genomes_project 15 87265502 87267115 + Shank3 protein_coding processed_transcript MGP_AJ_T0042228.1 MGP_AJ_G0022198.1 mouse_genomes_project 15 87267596 87278527 + MGP_AJ_P0042228 Shank3 protein_coding protein_coding MGP_AJ_T0011389.1 MGP_AJ_G0009511.1 mouse_genomes_project 15 59049179 59049265 + Gm27718 misc_RNA misc_RNA MGP_AJ_T0010077.1 MGP_AJ_G0008199.1 mouse_genomes_project 15 81141256 81141333 + Gm24575 miRNA miRNA MGP_AJ_T0040524.1 MGP_AJ_G0021671.1 mouse_genomes_project 15 6029045 6057907 - MGP_AJ_P0040524 Skp2 protein_coding protein_coding MGP_AJ_T0040525.1 MGP_AJ_G0021671.1 mouse_genomes_project 15 6029045 6057981 - MGP_AJ_P0040525 Skp2 protein_coding protein_coding MGP_AJ_T0040526.1 MGP_AJ_G0021671.1 mouse_genomes_project 15 6030363 6073101 - MGP_AJ_P0040526 Skp2 protein_coding protein_coding MGP_AJ_T0040527.1 MGP_AJ_G0021671.1 mouse_genomes_project 15 6044436 6057894 - Skp2 protein_coding retained_intron MGP_AJ_T0040529.1 MGP_AJ_G0021671.1 mouse_genomes_project 15 6069784 6073102 - Skp2 protein_coding processed_transcript MGP_AJ_T0041744.1 MGP_AJ_G0022052.1 mouse_genomes_project 15 77520615 77539516 - MGP_AJ_P0041744 Pdgfb protein_coding protein_coding MGP_AJ_T0100822.1 MGP_AJ_G0038788.1 mouse_genomes_project 15 27066185 27066258 - Gm24554 snoRNA snoRNA MGP_AJ_T0040899.1 MGP_AJ_G0021804.1 mouse_genomes_project 15 50402055 50849748 - Samd12 protein_coding processed_transcript MGP_AJ_T0040900.1 MGP_AJ_G0021804.1 mouse_genomes_project 15 50402235 50849741 - MGP_AJ_P0040900 Samd12 protein_coding protein_coding MGP_AJ_T0040901.1 MGP_AJ_G0021804.1 mouse_genomes_project 15 50402628 50849592 - MGP_AJ_P0040901 Samd12 protein_coding nonsense_mediated_decay MGP_AJ_T0040902.1 MGP_AJ_G0021804.1 mouse_genomes_project 15 50768547 50849748 - Samd12 protein_coding processed_transcript MGP_AJ_T0010082.1 MGP_AJ_G0008204.1 mouse_genomes_project 15 84769080 84769175 + Gm23416 miRNA miRNA MGP_AJ_T0042649.1 MGP_AJ_G0022332.1 mouse_genomes_project 15 99315927 99337138 - MGP_AJ_P0042649 Krt80 protein_coding protein_coding MGP_AJ_T0040857.1 MGP_AJ_G0021788.1 mouse_genomes_project 15 41167269 41209187 + MGP_AJ_P0040857 Trhr protein_coding protein_coding MGP_AJ_T0040858.1 MGP_AJ_G0021788.1 mouse_genomes_project 15 41167367 41207438 + MGP_AJ_P0040858 Trhr protein_coding protein_coding MGP_AJ_T0017454.1 MGP_AJ_G0015269.1 mouse_genomes_project 15 55127293 55236815 + Gm15943 processed_transcript processed_transcript MGP_AJ_T0017442.1 MGP_AJ_G0015265.1 mouse_genomes_project 15 15725494 15855104 - C030047K22Rik processed_transcript processed_transcript MGP_AJ_T0100847.1 MGP_AJ_G0038813.1 mouse_genomes_project 15 70463902 70464025 + Gm24787 snoRNA snoRNA MGP_AJ_T0040648.1 MGP_AJ_G0021710.1 mouse_genomes_project 15 22729131 22921260 + MGP_AJ_P0040648 Myo10 protein_coding protein_coding MGP_AJ_T0040649.1 MGP_AJ_G0021710.1 mouse_genomes_project 15 22729149 22887350 + MGP_AJ_P0040649 Myo10 protein_coding protein_coding MGP_AJ_T0040650.1 MGP_AJ_G0021710.1 mouse_genomes_project 15 22729155 22810088 + Myo10 protein_coding retained_intron MGP_AJ_T0040651.1 MGP_AJ_G0021710.1 mouse_genomes_project 15 22781163 22831919 + Myo10 protein_coding processed_transcript MGP_AJ_T0040652.1 MGP_AJ_G0021710.1 mouse_genomes_project 15 22821967 22831970 + Myo10 protein_coding retained_intron MGP_AJ_T0040653.1 MGP_AJ_G0021710.1 mouse_genomes_project 15 22850409 22888780 + MGP_AJ_P0040653 Myo10 protein_coding protein_coding MGP_AJ_T0040654.1 MGP_AJ_G0021710.1 mouse_genomes_project 15 22860732 22921258 + MGP_AJ_P0040654 Myo10 protein_coding protein_coding MGP_AJ_T0040655.1 MGP_AJ_G0021710.1 mouse_genomes_project 15 22860801 22887360 + MGP_AJ_P0040655 Myo10 protein_coding protein_coding MGP_AJ_T0040656.1 MGP_AJ_G0021710.1 mouse_genomes_project 15 22866597 22883921 + MGP_AJ_P0040656 Myo10 protein_coding protein_coding MGP_AJ_T0040657.1 MGP_AJ_G0021710.1 mouse_genomes_project 15 22866617 22887995 + MGP_AJ_P0040657 Myo10 protein_coding protein_coding MGP_AJ_T0040658.1 MGP_AJ_G0021710.1 mouse_genomes_project 15 22876385 22884170 + MGP_AJ_P0040658 Myo10 protein_coding protein_coding MGP_AJ_T0040659.1 MGP_AJ_G0021710.1 mouse_genomes_project 15 22881811 22888643 + MGP_AJ_P0040659 Myo10 protein_coding protein_coding MGP_AJ_T0040660.1 MGP_AJ_G0021710.1 mouse_genomes_project 15 22887775 22888954 + Myo10 protein_coding retained_intron MGP_AJ_T0041117.1 MGP_AJ_G0021878.1 mouse_genomes_project 15 70203859 70295641 - MGP_AJ_P0041117 Ago2 protein_coding protein_coding MGP_AJ_T0041589.1 MGP_AJ_G0022016.1 mouse_genomes_project 15 76388672 76406713 + MGP_AJ_P0041589 Gga1 protein_coding protein_coding MGP_AJ_T0099560.1 MGP_AJ_G0037526.1 mouse_genomes_project 15 69369786 69369893 - Gm23217 snRNA snRNA MGP_AJ_T0099562.1 MGP_AJ_G0037528.1 mouse_genomes_project 15 69828544 69828611 - Gm28020 snRNA snRNA MGP_AJ_T0006754.1 MGP_AJ_G0005572.1 mouse_genomes_project 15 29298981 29299637 + 4930518I17Rik lincRNA lincRNA MGP_AJ_T0040708.1 MGP_AJ_G0021736.1 mouse_genomes_project 15 31124176 31145723 + Mtdh protein_coding retained_intron MGP_AJ_T0040709.1 MGP_AJ_G0021736.1 mouse_genomes_project 15 31124201 31185653 + MGP_AJ_P0040709 Mtdh protein_coding protein_coding MGP_AJ_T0040710.1 MGP_AJ_G0021736.1 mouse_genomes_project 15 31124207 31167586 + Mtdh protein_coding retained_intron MGP_AJ_T0040711.1 MGP_AJ_G0021736.1 mouse_genomes_project 15 31124518 31177608 + MGP_AJ_P0040711 Mtdh protein_coding nonsense_mediated_decay MGP_AJ_T0040712.1 MGP_AJ_G0021736.1 mouse_genomes_project 15 31124790 31180047 + MGP_AJ_P0040712 Mtdh protein_coding protein_coding MGP_AJ_T0040713.1 MGP_AJ_G0021736.1 mouse_genomes_project 15 31124801 31180078 + MGP_AJ_P0040713 Mtdh protein_coding protein_coding MGP_AJ_T0040714.1 MGP_AJ_G0021736.1 mouse_genomes_project 15 31124804 31166980 + MGP_AJ_P0040714 Mtdh protein_coding protein_coding MGP_AJ_T0040715.1 MGP_AJ_G0021736.1 mouse_genomes_project 15 31125337 31161277 + Mtdh protein_coding processed_transcript MGP_AJ_T0040716.1 MGP_AJ_G0021736.1 mouse_genomes_project 15 31158219 31183977 + MGP_AJ_P0040716 Mtdh protein_coding protein_coding MGP_AJ_T0040717.1 MGP_AJ_G0021736.1 mouse_genomes_project 15 31176714 31184550 + Mtdh protein_coding processed_transcript MGP_AJ_T0010099.1 MGP_AJ_G0008221.1 mouse_genomes_project 15 99927902 99928013 + Gm44356 miRNA miRNA MGP_AJ_T0013102.1 MGP_AJ_G0011197.1 mouse_genomes_project 15 81817647 81818442 - processed_pseudogene processed_pseudogene MGP_AJ_T0042215.1 MGP_AJ_G0022195.1 mouse_genomes_project 15 87160099 87161379 + MGP_AJ_P0042215 C730034F03Rik protein_coding protein_coding MGP_AJ_T0040829.1 MGP_AJ_G0021775.1 mouse_genomes_project 15 36171497 36651833 + MGP_AJ_P0040829 Rims2 protein_coding protein_coding MGP_AJ_T0040830.1 MGP_AJ_G0021775.1 mouse_genomes_project 15 36171528 36651657 + MGP_AJ_P0040830 Rims2 protein_coding protein_coding MGP_AJ_T0040831.1 MGP_AJ_G0021775.1 mouse_genomes_project 15 36249959 36323741 + MGP_AJ_P0040831 Rims2 protein_coding unknown_likely_coding MGP_AJ_T0040832.1 MGP_AJ_G0021775.1 mouse_genomes_project 15 36359932 36586981 + MGP_AJ_P0040832 Rims2 protein_coding unknown_likely_coding MGP_AJ_T0040833.1 MGP_AJ_G0021775.1 mouse_genomes_project 15 36629612 36654274 + MGP_AJ_P0040833 Rims2 protein_coding unknown_likely_coding MGP_AJ_T0003611.1 MGP_AJ_G0003270.1 mouse_genomes_project 15 76424078 76425797 - 1700027A07Rik antisense antisense MGP_AJ_T0041163.1 MGP_AJ_G0021888.1 mouse_genomes_project 15 71793144 71796630 - MGP_AJ_P0041163 Arc protein_coding protein_coding MGP_AJ_T0041164.1 MGP_AJ_G0021888.1 mouse_genomes_project 15 71793144 71796632 - MGP_AJ_P0041164 Arc protein_coding protein_coding MGP_AJ_T0041561.1 MGP_AJ_G0022004.1 mouse_genomes_project 15 75926883 75936855 + MGP_AJ_P0041561 Kctd17 protein_coding protein_coding MGP_AJ_T0041562.1 MGP_AJ_G0022004.1 mouse_genomes_project 15 75926883 75936855 + MGP_AJ_P0041562 Kctd17 protein_coding protein_coding MGP_AJ_T0041563.1 MGP_AJ_G0022004.1 mouse_genomes_project 15 75926947 75937267 + MGP_AJ_P0041563 Kctd17 protein_coding protein_coding MGP_AJ_T0041564.1 MGP_AJ_G0022004.1 mouse_genomes_project 15 75926981 75937201 + MGP_AJ_P0041564 Kctd17 protein_coding protein_coding MGP_AJ_T0041565.1 MGP_AJ_G0022004.1 mouse_genomes_project 15 75927010 75934218 + Kctd17 protein_coding retained_intron MGP_AJ_T0041566.1 MGP_AJ_G0022004.1 mouse_genomes_project 15 75927115 75937005 + MGP_AJ_P0041566 Kctd17 protein_coding nonsense_mediated_decay MGP_AJ_T0041567.1 MGP_AJ_G0022004.1 mouse_genomes_project 15 75928443 75936938 + MGP_AJ_P0041567 Kctd17 protein_coding protein_coding MGP_AJ_T0041568.1 MGP_AJ_G0022004.1 mouse_genomes_project 15 75931344 75936092 + Kctd17 protein_coding retained_intron MGP_AJ_T0041569.1 MGP_AJ_G0022004.1 mouse_genomes_project 15 75932339 75935937 + Kctd17 protein_coding retained_intron MGP_AJ_T0011387.1 MGP_AJ_G0009509.1 mouse_genomes_project 15 58978595 58978768 + Gm27913 misc_RNA misc_RNA MGP_AJ_T0102344.1 MGP_AJ_G0040086.1 mouse_genomes_project 15 72154862 72156745 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0042437.1 MGP_AJ_G0022264.1 mouse_genomes_project 15 96446861 96460575 - MGP_AJ_P0042437 Rnd1 protein_coding protein_coding MGP_AJ_T0042438.1 MGP_AJ_G0022264.1 mouse_genomes_project 15 96452393 96460576 - MGP_AJ_P0042438 Rnd1 protein_coding protein_coding MGP_AJ_T0042439.1 MGP_AJ_G0022264.1 mouse_genomes_project 15 96455405 96460573 - MGP_AJ_P0042439 Rnd1 protein_coding protein_coding MGP_AJ_T0010059.1 MGP_AJ_G0008181.1 mouse_genomes_project 15 76515040 76515102 + Mir6956 miRNA miRNA MGP_AJ_T0099545.1 MGP_AJ_G0037511.1 mouse_genomes_project 15 43892618 43892680 - Gm23665 snRNA snRNA MGP_AJ_T0040924.1 MGP_AJ_G0021815.1 mouse_genomes_project 15 52242770 52453146 + MGP_AJ_P0040924 Col14a1 protein_coding protein_coding MGP_AJ_T0040925.1 MGP_AJ_G0021815.1 mouse_genomes_project 15 52242770 52453147 + MGP_AJ_P0040925 Col14a1 protein_coding protein_coding MGP_AJ_T0040926.1 MGP_AJ_G0021815.1 mouse_genomes_project 15 52242771 52453145 + MGP_AJ_P0040926 Col14a1 protein_coding protein_coding MGP_AJ_T0040927.1 MGP_AJ_G0021815.1 mouse_genomes_project 15 52375107 52452033 + MGP_AJ_P0040927 Col14a1 protein_coding protein_coding MGP_AJ_T0040621.1 MGP_AJ_G0021700.1 mouse_genomes_project 15 9757886 9874691 + MGP_AJ_P0040621 Drosha protein_coding protein_coding MGP_AJ_T0040622.1 MGP_AJ_G0021700.1 mouse_genomes_project 15 9757934 9874644 + MGP_AJ_P0040622 Drosha protein_coding protein_coding MGP_AJ_T0040623.1 MGP_AJ_G0021700.1 mouse_genomes_project 15 9757961 9767897 + Drosha protein_coding processed_transcript MGP_AJ_T0040624.1 MGP_AJ_G0021700.1 mouse_genomes_project 15 9757961 9767897 + Drosha protein_coding processed_transcript MGP_AJ_T0040625.1 MGP_AJ_G0021700.1 mouse_genomes_project 15 9759197 9767815 + Drosha protein_coding processed_transcript MGP_AJ_T0040626.1 MGP_AJ_G0021700.1 mouse_genomes_project 15 9767104 9874523 + MGP_AJ_P0040626 Drosha protein_coding protein_coding MGP_AJ_T0040627.1 MGP_AJ_G0021700.1 mouse_genomes_project 15 9770632 9843759 + Drosha protein_coding retained_intron MGP_AJ_T0040628.1 MGP_AJ_G0021700.1 mouse_genomes_project 15 9818861 9825436 + Drosha protein_coding processed_transcript MGP_AJ_T0100819.1 MGP_AJ_G0038785.1 mouse_genomes_project 15 20214850 20214982 + Gm24656 snoRNA snoRNA MGP_AJ_T0041907.1 MGP_AJ_G0022097.1 mouse_genomes_project 15 79792297 79794778 - MGP_AJ_P0041907 Tnfrsf13c protein_coding protein_coding MGP_AJ_T0042447.1 MGP_AJ_G0022269.1 mouse_genomes_project 15 96578372 96582360 + MGP_AJ_P0042447 Wnt1 protein_coding protein_coding MGP_AJ_T0040707.1 MGP_AJ_G0021735.1 mouse_genomes_project 15 30745854 30749858 - MGP_AJ_P0040707 Tspyl5 protein_coding protein_coding MGP_AJ_T0003609.1 MGP_AJ_G0003268.1 mouse_genomes_project 15 71912569 71929103 + Gm17189 antisense antisense MGP_AJ_T0041249.1 MGP_AJ_G0021920.1 mouse_genomes_project 15 73172896 73176414 - MGP_AJ_P0041249 Naprt protein_coding protein_coding MGP_AJ_T0042294.1 MGP_AJ_G0022216.1 mouse_genomes_project 15 91252817 91351027 - MGP_AJ_P0042294 Prickle1 protein_coding protein_coding MGP_AJ_T0042295.1 MGP_AJ_G0022216.1 mouse_genomes_project 15 91252817 91273380 - MGP_AJ_P0042295 Prickle1 protein_coding protein_coding MGP_AJ_T0099559.1 MGP_AJ_G0037525.1 mouse_genomes_project 15 65671254 65671361 + Gm25987 snRNA snRNA MGP_AJ_T0040893.1 MGP_AJ_G0021801.1 mouse_genomes_project 15 49235778 49276961 + MGP_AJ_P0040893 Slc30a8 protein_coding protein_coding MGP_AJ_T0003601.1 MGP_AJ_G0003261.1 mouse_genomes_project 15 54643794 54645898 - 9330154K18Rik antisense antisense MGP_AJ_T0042229.1 MGP_AJ_G0022199.1 mouse_genomes_project 15 87302918 87309174 + MGP_AJ_P0042229 Acr protein_coding protein_coding MGP_AJ_T0041796.1 MGP_AJ_G0022068.1 mouse_genomes_project 15 78558981 78736769 - MGP_AJ_P0041796 Mkl1 protein_coding protein_coding MGP_AJ_T0041797.1 MGP_AJ_G0022068.1 mouse_genomes_project 15 78558981 78736745 - MGP_AJ_P0041797 Mkl1 protein_coding protein_coding MGP_AJ_T0041798.1 MGP_AJ_G0022068.1 mouse_genomes_project 15 78558991 78655281 - MGP_AJ_P0041798 Mkl1 protein_coding protein_coding MGP_AJ_T0041799.1 MGP_AJ_G0022068.1 mouse_genomes_project 15 78558991 78736735 - MGP_AJ_P0041799 Mkl1 protein_coding protein_coding MGP_AJ_T0041800.1 MGP_AJ_G0022068.1 mouse_genomes_project 15 78562554 78593514 - MGP_AJ_P0041800 Mkl1 protein_coding protein_coding MGP_AJ_T0041801.1 MGP_AJ_G0022068.1 mouse_genomes_project 15 78563463 78564889 - Mkl1 protein_coding retained_intron MGP_AJ_T0041802.1 MGP_AJ_G0022068.1 mouse_genomes_project 15 78566938 78568003 - Mkl1 protein_coding retained_intron MGP_AJ_T0041803.1 MGP_AJ_G0022068.1 mouse_genomes_project 15 78569189 78571308 - Mkl1 protein_coding retained_intron MGP_AJ_T0041804.1 MGP_AJ_G0022068.1 mouse_genomes_project 15 78573684 78736740 - Mkl1 protein_coding retained_intron MGP_AJ_T0041805.1 MGP_AJ_G0022068.1 mouse_genomes_project 15 78593100 78736534 - Mkl1 protein_coding retained_intron MGP_AJ_T0041500.1 MGP_AJ_G0021979.1 mouse_genomes_project 15 74363391 74592594 - MGP_AJ_P0041500 Rbfox2 protein_coding protein_coding MGP_AJ_T0041501.1 MGP_AJ_G0021979.1 mouse_genomes_project 15 74363392 74438169 - MGP_AJ_P0041501 Rbfox2 protein_coding protein_coding MGP_AJ_T0041502.1 MGP_AJ_G0021979.1 mouse_genomes_project 15 74363392 74592594 - MGP_AJ_P0041502 Rbfox2 protein_coding protein_coding MGP_AJ_T0041503.1 MGP_AJ_G0021979.1 mouse_genomes_project 15 74363392 74438169 - MGP_AJ_P0041503 Rbfox2 protein_coding protein_coding MGP_AJ_T0042426.1 MGP_AJ_G0022260.1 mouse_genomes_project 15 96350433 96368405 + MGP_AJ_P0042426 4930415O20Rik protein_coding protein_coding MGP_AJ_T0041136.1 MGP_AJ_G0021883.1 mouse_genomes_project 15 70852765 70888385 + MGP_AJ_P0041136 Ptp4a3 protein_coding protein_coding MGP_AJ_T0041137.1 MGP_AJ_G0021883.1 mouse_genomes_project 15 70852765 70888385 + MGP_AJ_P0041137 Ptp4a3 protein_coding protein_coding MGP_AJ_T0041138.1 MGP_AJ_G0021883.1 mouse_genomes_project 15 70854546 70888385 + MGP_AJ_P0041138 Ptp4a3 protein_coding protein_coding MGP_AJ_T0041139.1 MGP_AJ_G0021883.1 mouse_genomes_project 15 70877644 70888385 + MGP_AJ_P0041139 Ptp4a3 protein_coding protein_coding MGP_AJ_T0013067.1 MGP_AJ_G0011162.1 mouse_genomes_project 15 19985959 19987714 + processed_pseudogene processed_pseudogene MGP_AJ_T0040747.1 MGP_AJ_G0021749.1 mouse_genomes_project 15 33003368 33012809 - MGP_AJ_P0040747 Cox6c protein_coding nonsense_mediated_decay MGP_AJ_T0040748.1 MGP_AJ_G0021749.1 mouse_genomes_project 15 33009458 33015724 - MGP_AJ_P0040748 Cox6c protein_coding protein_coding MGP_AJ_T0040749.1 MGP_AJ_G0021749.1 mouse_genomes_project 15 33009462 33015123 - MGP_AJ_P0040749 Cox6c protein_coding protein_coding MGP_AJ_T0040750.1 MGP_AJ_G0021749.1 mouse_genomes_project 15 33009465 33015685 - Cox6c protein_coding retained_intron MGP_AJ_T0040751.1 MGP_AJ_G0021749.1 mouse_genomes_project 15 33012864 33015487 - MGP_AJ_P0040751 Cox6c protein_coding protein_coding MGP_AJ_T0041807.1 MGP_AJ_G0022070.1 mouse_genomes_project 15 78866830 78908518 - MGP_AJ_P0041807 Slc25a17 protein_coding protein_coding MGP_AJ_T0040892.1 MGP_AJ_G0021800.1 mouse_genomes_project 15 48967901 48973517 + MGP_AJ_P0040892 Aard protein_coding protein_coding MGP_AJ_T0040688.1 MGP_AJ_G0021725.1 mouse_genomes_project 15 28489518 28503600 - MGP_AJ_P0040688 Ropn1l protein_coding protein_coding MGP_AJ_T0003593.1 MGP_AJ_G0003255.1 mouse_genomes_project 15 3523713 3572098 - Gm2245 antisense antisense MGP_AJ_T0013092.1 MGP_AJ_G0011187.1 mouse_genomes_project 15 73136888 73138298 - processed_pseudogene processed_pseudogene MGP_AJ_T0042380.1 MGP_AJ_G0022243.1 mouse_genomes_project 15 95779876 95835704 - MGP_AJ_P0042380 Senp1 protein_coding protein_coding MGP_AJ_T0042381.1 MGP_AJ_G0022243.1 mouse_genomes_project 15 95782376 95807322 - Senp1 protein_coding retained_intron MGP_AJ_T0042382.1 MGP_AJ_G0022243.1 mouse_genomes_project 15 95782537 95836574 - MGP_AJ_P0042382 Senp1 protein_coding nonsense_mediated_decay MGP_AJ_T0042383.1 MGP_AJ_G0022243.1 mouse_genomes_project 15 95784028 95790096 - Senp1 protein_coding processed_transcript MGP_AJ_T0042384.1 MGP_AJ_G0022243.1 mouse_genomes_project 15 95806188 95836375 - Senp1 protein_coding retained_intron MGP_AJ_T0042385.1 MGP_AJ_G0022243.1 mouse_genomes_project 15 95828063 95830566 - MGP_AJ_P0042385 Senp1 protein_coding protein_coding MGP_AJ_T0042386.1 MGP_AJ_G0022243.1 mouse_genomes_project 15 95831578 95836310 - Senp1 protein_coding processed_transcript MGP_AJ_T0042387.1 MGP_AJ_G0022243.1 mouse_genomes_project 15 95832212 95835892 - Senp1 protein_coding processed_transcript MGP_AJ_T0041959.1 MGP_AJ_G0022118.1 mouse_genomes_project 15 80740189 80763515 - MGP_AJ_P0041959 Poldip3 protein_coding protein_coding MGP_AJ_T0041960.1 MGP_AJ_G0022118.1 mouse_genomes_project 15 80740189 80763568 - MGP_AJ_P0041960 Poldip3 protein_coding protein_coding MGP_AJ_T0041961.1 MGP_AJ_G0022118.1 mouse_genomes_project 15 80747383 80763485 - MGP_AJ_P0041961 Poldip3 protein_coding protein_coding MGP_AJ_T0041962.1 MGP_AJ_G0022118.1 mouse_genomes_project 15 80747478 80750125 - Poldip3 protein_coding retained_intron MGP_AJ_T0041963.1 MGP_AJ_G0022118.1 mouse_genomes_project 15 80749901 80763513 - Poldip3 protein_coding retained_intron MGP_AJ_T0041964.1 MGP_AJ_G0022118.1 mouse_genomes_project 15 80752041 80763520 - Poldip3 protein_coding retained_intron MGP_AJ_T0040538.1 MGP_AJ_G0021676.1 mouse_genomes_project 15 6422478 6447746 - MGP_AJ_P0040538 Il7r protein_coding protein_coding MGP_AJ_T0100836.1 MGP_AJ_G0038802.1 mouse_genomes_project 15 44747069 44747206 + Gm23530 snoRNA snoRNA MGP_AJ_T0102352.1 MGP_AJ_G0040094.1 mouse_genomes_project 15 72624937 72627113 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0100813.1 MGP_AJ_G0038779.1 mouse_genomes_project 15 2034085 2034166 + Snord72 snoRNA snoRNA MGP_AJ_T0010081.1 MGP_AJ_G0008203.1 mouse_genomes_project 15 83372623 83372708 + Mirlet7b miRNA miRNA MGP_AJ_T0010037.1 MGP_AJ_G0008159.1 mouse_genomes_project 15 33676520 33676646 + Gm44310 miRNA miRNA MGP_AJ_T0042122.1 MGP_AJ_G0022174.1 mouse_genomes_project 15 86792496 86802842 + MGP_AJ_P0042122 Trabd protein_coding protein_coding MGP_AJ_T0042123.1 MGP_AJ_G0022174.1 mouse_genomes_project 15 86793385 86804610 + MGP_AJ_P0042123 Trabd protein_coding protein_coding MGP_AJ_T0042124.1 MGP_AJ_G0022174.1 mouse_genomes_project 15 86793444 86804604 + MGP_AJ_P0042124 Trabd protein_coding nonsense_mediated_decay MGP_AJ_T0042125.1 MGP_AJ_G0022174.1 mouse_genomes_project 15 86793466 86803663 + MGP_AJ_P0042125 Trabd protein_coding protein_coding MGP_AJ_T0042126.1 MGP_AJ_G0022174.1 mouse_genomes_project 15 86793496 86803666 + MGP_AJ_P0042126 Trabd protein_coding protein_coding MGP_AJ_T0042127.1 MGP_AJ_G0022174.1 mouse_genomes_project 15 86800061 86804604 + Trabd protein_coding retained_intron MGP_AJ_T0042128.1 MGP_AJ_G0022174.1 mouse_genomes_project 15 86802241 86803157 + Trabd protein_coding retained_intron MGP_AJ_T0013097.1 MGP_AJ_G0011192.1 mouse_genomes_project 15 76053570 76054008 - processed_pseudogene processed_pseudogene MGP_AJ_T0042674.1 MGP_AJ_G0022350.1 mouse_genomes_project 15 99823241 99832251 - MGP_AJ_P0042674 Krt73 protein_coding protein_coding MGP_AJ_T0040758.1 MGP_AJ_G0021752.1 mouse_genomes_project 15 33254736 33257730 + MGP_AJ_P0040758 Polr2k protein_coding protein_coding MGP_AJ_T0040759.1 MGP_AJ_G0021752.1 mouse_genomes_project 15 33254759 33257733 + MGP_AJ_P0040759 Polr2k protein_coding protein_coding MGP_AJ_T0011396.1 MGP_AJ_G0009518.1 mouse_genomes_project 15 95677054 95677365 + Gm22202 misc_RNA misc_RNA MGP_AJ_T0003634.1 MGP_AJ_G0003287.1 mouse_genomes_project 15 97652994 97667850 + Gm17057 antisense antisense MGP_AJ_T0042354.1 MGP_AJ_G0022238.1 mouse_genomes_project 15 95525522 95533847 + MGP_AJ_P0042354 Slc48a1 protein_coding protein_coding MGP_AJ_T0042355.1 MGP_AJ_G0022238.1 mouse_genomes_project 15 95525595 95531122 + MGP_AJ_P0042355 Slc48a1 protein_coding nonsense_mediated_decay MGP_AJ_T0042046.1 MGP_AJ_G0022147.1 mouse_genomes_project 15 82717137 82778032 - MGP_AJ_P0042046 Smc1b protein_coding protein_coding MGP_AJ_T0010048.1 MGP_AJ_G0008170.1 mouse_genomes_project 15 65347392 65347474 - Mir30d miRNA miRNA MGP_AJ_T0042068.1 MGP_AJ_G0022155.1 mouse_genomes_project 15 83483140 83490204 - MGP_AJ_P0042068 Pkdrej protein_coding protein_coding MGP_AJ_T0099535.1 MGP_AJ_G0037501.1 mouse_genomes_project 15 18148883 18148990 + Gm25101 snRNA snRNA MGP_AJ_T0098600.1 MGP_AJ_G0036584.1 mouse_genomes_project 15 84861649 84861753 + n-R5s42 rRNA rRNA MGP_AJ_T0041483.1 MGP_AJ_G0021971.1 mouse_genomes_project 15 74139530 74161304 - MGP_AJ_P0041483 Zfp251 protein_coding protein_coding MGP_AJ_T0040690.1 MGP_AJ_G0021727.1 mouse_genomes_project 15 28506702 28583860 - MGP_AJ_P0040690 March6 protein_coding protein_coding MGP_AJ_T0100821.1 MGP_AJ_G0038787.1 mouse_genomes_project 15 26970150 26970284 - Gm23033 snoRNA snoRNA MGP_AJ_T0003598.1 MGP_AJ_G0003258.1 mouse_genomes_project 15 36753746 36769281 + Gm16291 antisense antisense MGP_AJ_T0041980.1 MGP_AJ_G0022126.1 mouse_genomes_project 15 81187898 81198531 + MGP_AJ_P0041980 Tspo protein_coding protein_coding MGP_AJ_T0040813.1 MGP_AJ_G0021767.1 mouse_genomes_project 15 35384521 35391781 - MGP_AJ_P0040813 Klf10 protein_coding protein_coding MGP_AJ_T0098405.1 MGP_AJ_G0036389.1 mouse_genomes_project 15 41846876 41848552 + pseudogene pseudogene MGP_AJ_T0042531.1 MGP_AJ_G0022297.1 mouse_genomes_project 15 97517148 97521293 - MGP_AJ_P0042531 Gm17349 protein_coding protein_coding MGP_AJ_T0099571.1 MGP_AJ_G0037537.1 mouse_genomes_project 15 80763827 80763978 + Rnu12 snRNA snRNA MGP_AJ_T0042510.1 MGP_AJ_G0022290.1 mouse_genomes_project 15 97280211 97284848 - MGP_AJ_P0042510 Bcdin3d protein_coding protein_coding MGP_AJ_T0041488.1 MGP_AJ_G0021975.1 mouse_genomes_project 15 74201243 74215925 - MGP_AJ_P0041488 Zfp647 protein_coding unknown_likely_coding MGP_AJ_T0099534.1 MGP_AJ_G0037500.1 mouse_genomes_project 15 9085197 9085306 - Gm25713 snRNA snRNA MGP_AJ_T0017471.1 MGP_AJ_G0015281.1 mouse_genomes_project 15 78736785 78738781 + 4930483J18Rik processed_transcript processed_transcript MGP_AJ_T0017472.1 MGP_AJ_G0015281.1 mouse_genomes_project 15 78736864 78738774 + 4930483J18Rik processed_transcript processed_transcript MGP_AJ_T0098924.1 MGP_AJ_G0036904.1 mouse_genomes_project 15 92836069 92901545 - 1700129L04Rik sense_intronic sense_intronic MGP_AJ_T0098925.1 MGP_AJ_G0036904.1 mouse_genomes_project 15 92836143 92888506 - 1700129L04Rik sense_intronic sense_intronic MGP_AJ_T0042040.1 MGP_AJ_G0022143.1 mouse_genomes_project 15 82569426 82588962 + MGP_AJ_P0042040 Nup50 protein_coding protein_coding MGP_AJ_T0041431.1 MGP_AJ_G0021960.1 mouse_genomes_project 15 73907751 73911665 - MGP_AJ_P0041431 Tonsl protein_coding protein_coding MGP_AJ_T0041432.1 MGP_AJ_G0021960.1 mouse_genomes_project 15 73911639 73915937 - MGP_AJ_P0041432 Tonsl protein_coding protein_coding MGP_AJ_T0041433.1 MGP_AJ_G0021960.1 mouse_genomes_project 15 73911874 73927477 - MGP_AJ_P0041433 Tonsl protein_coding protein_coding MGP_AJ_T0041434.1 MGP_AJ_G0021960.1 mouse_genomes_project 15 73911875 73916018 - Tonsl protein_coding retained_intron MGP_AJ_T0041435.1 MGP_AJ_G0021960.1 mouse_genomes_project 15 73919405 73920309 - MGP_AJ_P0041435 Tonsl protein_coding nonsense_mediated_decay MGP_AJ_T0041436.1 MGP_AJ_G0021960.1 mouse_genomes_project 15 73919438 73927448 - MGP_AJ_P0041436 Tonsl protein_coding nonsense_mediated_decay MGP_AJ_T0041437.1 MGP_AJ_G0021960.1 mouse_genomes_project 15 73924705 73925798 - Tonsl protein_coding retained_intron MGP_AJ_T0041438.1 MGP_AJ_G0021960.1 mouse_genomes_project 15 73926075 73927157 - Tonsl protein_coding retained_intron MGP_AJ_T0041439.1 MGP_AJ_G0021960.1 mouse_genomes_project 15 73926377 73927359 - MGP_AJ_P0041439 Tonsl protein_coding protein_coding MGP_AJ_T0042565.1 MGP_AJ_G0022310.1 mouse_genomes_project 15 98160616 98172140 + MGP_AJ_P0042565 protein_coding protein_coding MGP_AJ_T0040949.1 MGP_AJ_G0021823.1 mouse_genomes_project 15 54822888 54881695 + MGP_AJ_P0040949 Tbc1d31 protein_coding protein_coding MGP_AJ_T0040950.1 MGP_AJ_G0021823.1 mouse_genomes_project 15 54822923 54871036 + Tbc1d31 protein_coding processed_transcript MGP_AJ_T0040951.1 MGP_AJ_G0021823.1 mouse_genomes_project 15 54822928 54830638 + MGP_AJ_P0040951 Tbc1d31 protein_coding nonsense_mediated_decay MGP_AJ_T0040952.1 MGP_AJ_G0021823.1 mouse_genomes_project 15 54823694 54871116 + Tbc1d31 protein_coding retained_intron MGP_AJ_T0040953.1 MGP_AJ_G0021823.1 mouse_genomes_project 15 54824544 54865643 + Tbc1d31 protein_coding retained_intron MGP_AJ_T0040954.1 MGP_AJ_G0021823.1 mouse_genomes_project 15 54826702 54866956 + Tbc1d31 protein_coding retained_intron MGP_AJ_T0040955.1 MGP_AJ_G0021823.1 mouse_genomes_project 15 54870046 54881701 + MGP_AJ_P0040955 Tbc1d31 protein_coding protein_coding MGP_AJ_T0042683.1 MGP_AJ_G0022359.1 mouse_genomes_project 15 100133134 100156497 + MGP_AJ_P0042683 Eif4b protein_coding protein_coding MGP_AJ_T0041055.1 MGP_AJ_G0021860.1 mouse_genomes_project 15 62876769 62912227 - MGP_AJ_P0041055 Oc90 protein_coding protein_coding MGP_AJ_T0041056.1 MGP_AJ_G0021860.1 mouse_genomes_project 15 62876769 62912370 - MGP_AJ_P0041056 Oc90 protein_coding protein_coding MGP_AJ_T0041057.1 MGP_AJ_G0021860.1 mouse_genomes_project 15 62876769 62900519 - MGP_AJ_P0041057 Oc90 protein_coding protein_coding MGP_AJ_T0041058.1 MGP_AJ_G0021860.1 mouse_genomes_project 15 62877108 62891539 - MGP_AJ_P0041058 Oc90 protein_coding protein_coding MGP_AJ_T0041059.1 MGP_AJ_G0021860.1 mouse_genomes_project 15 62877236 62888739 - MGP_AJ_P0041059 Oc90 protein_coding protein_coding MGP_AJ_T0042054.1 MGP_AJ_G0022152.1 mouse_genomes_project 15 83199140 83242645 - MGP_AJ_P0042054 Wnt7b protein_coding protein_coding MGP_AJ_T0042055.1 MGP_AJ_G0022152.1 mouse_genomes_project 15 83199144 83246856 - MGP_AJ_P0042055 Wnt7b protein_coding protein_coding MGP_AJ_T0040584.1 MGP_AJ_G0021687.1 mouse_genomes_project 15 7908314 7923267 + MGP_AJ_P0040584 Amacr protein_coding protein_coding MGP_AJ_T0041588.1 MGP_AJ_G0022015.1 mouse_genomes_project 15 76361423 76366091 - MGP_AJ_P0041588 Lgals2 protein_coding protein_coding MGP_AJ_T0042095.1 MGP_AJ_G0022165.1 mouse_genomes_project 15 86408979 86456005 - MGP_AJ_P0042095 Brd1 protein_coding protein_coding MGP_AJ_T0042096.1 MGP_AJ_G0022165.1 mouse_genomes_project 15 86409975 86452544 - MGP_AJ_P0042096 Brd1 protein_coding protein_coding MGP_AJ_T0042097.1 MGP_AJ_G0022165.1 mouse_genomes_project 15 86417725 86422542 - Brd1 protein_coding processed_transcript MGP_AJ_T0042098.1 MGP_AJ_G0022165.1 mouse_genomes_project 15 86420528 86456002 - MGP_AJ_P0042098 Brd1 protein_coding protein_coding MGP_AJ_T0042099.1 MGP_AJ_G0022165.1 mouse_genomes_project 15 86434571 86440831 - Brd1 protein_coding processed_transcript MGP_AJ_T0042100.1 MGP_AJ_G0022165.1 mouse_genomes_project 15 86435104 86438716 - Brd1 protein_coding processed_transcript MGP_AJ_T0010076.1 MGP_AJ_G0008198.1 mouse_genomes_project 15 80559412 80559491 - Mir3080 miRNA miRNA MGP_AJ_T0042580.1 MGP_AJ_G0022315.1 mouse_genomes_project 15 98404665 98420321 - MGP_AJ_P0042580 Csrnp2 protein_coding protein_coding MGP_AJ_T0006822.1 MGP_AJ_G0005618.1 mouse_genomes_project 15 101177579 101183561 - Gm28876 lincRNA lincRNA MGP_AJ_T0040843.1 MGP_AJ_G0021780.1 mouse_genomes_project 15 37620006 38070741 + MGP_AJ_P0040843 Zfpm2 protein_coding protein_coding MGP_AJ_T0041271.1 MGP_AJ_G0021925.1 mouse_genomes_project 15 73222398 73230824 + MGP_AJ_P0041271 Zfp623 protein_coding protein_coding MGP_AJ_T0003603.1 MGP_AJ_G0003263.1 mouse_genomes_project 15 63287775 63291110 + Gm27242 antisense antisense MGP_AJ_T0040699.1 MGP_AJ_G0021730.1 mouse_genomes_project 15 28656455 28675983 + Fam173b protein_coding processed_transcript MGP_AJ_T0040700.1 MGP_AJ_G0021730.1 mouse_genomes_project 15 28656721 28672185 + MGP_AJ_P0040700 Fam173b protein_coding protein_coding MGP_AJ_T0040701.1 MGP_AJ_G0021730.1 mouse_genomes_project 15 28656721 28673259 + MGP_AJ_P0040701 Fam173b protein_coding nonsense_mediated_decay MGP_AJ_T0040864.1 MGP_AJ_G0021792.1 mouse_genomes_project 15 41596808 41618747 + MGP_AJ_P0040864 Ebag9 protein_coding unknown_likely_coding MGP_AJ_T0040451.1 MGP_AJ_G0021656.1 mouse_genomes_project 15 3218988 3355870 + Dab2 protein_coding processed_transcript MGP_AJ_T0040452.1 MGP_AJ_G0021656.1 mouse_genomes_project 15 3218988 3361062 + MGP_AJ_P0040452 Dab2 protein_coding protein_coding MGP_AJ_T0040453.1 MGP_AJ_G0021656.1 mouse_genomes_project 15 3219013 3336818 + MGP_AJ_P0040453 Dab2 protein_coding protein_coding MGP_AJ_T0040454.1 MGP_AJ_G0021656.1 mouse_genomes_project 15 3219032 3347639 + MGP_AJ_P0040454 Dab2 protein_coding protein_coding MGP_AJ_T0040455.1 MGP_AJ_G0021656.1 mouse_genomes_project 15 3219068 3256522 + Dab2 protein_coding processed_transcript MGP_AJ_T0040456.1 MGP_AJ_G0021656.1 mouse_genomes_project 15 3305844 3361055 + MGP_AJ_P0040456 Dab2 protein_coding protein_coding MGP_AJ_T0040457.1 MGP_AJ_G0021656.1 mouse_genomes_project 15 3305994 3361055 + MGP_AJ_P0040457 Dab2 protein_coding protein_coding MGP_AJ_T0040458.1 MGP_AJ_G0021656.1 mouse_genomes_project 15 3306022 3359978 + MGP_AJ_P0040458 Dab2 protein_coding protein_coding MGP_AJ_T0040459.1 MGP_AJ_G0021656.1 mouse_genomes_project 15 3306023 3359998 + MGP_AJ_P0040459 Dab2 protein_coding protein_coding MGP_AJ_T0040460.1 MGP_AJ_G0021656.1 mouse_genomes_project 15 3306025 3347639 + MGP_AJ_P0040460 Dab2 protein_coding protein_coding MGP_AJ_T0040461.1 MGP_AJ_G0021656.1 mouse_genomes_project 15 3308296 3338196 + MGP_AJ_P0040461 Dab2 protein_coding protein_coding MGP_AJ_T0040462.1 MGP_AJ_G0021656.1 mouse_genomes_project 15 3309309 3339715 + MGP_AJ_P0040462 Dab2 protein_coding protein_coding MGP_AJ_T0040463.1 MGP_AJ_G0021656.1 mouse_genomes_project 15 3342113 3359257 + MGP_AJ_P0040463 Dab2 protein_coding protein_coding MGP_AJ_T0040464.1 MGP_AJ_G0021656.1 mouse_genomes_project 15 3343035 3344898 + Dab2 protein_coding retained_intron MGP_AJ_T0042842.1 MGP_AJ_G0022405.1 mouse_genomes_project 15 101533304 101578153 + MGP_AJ_P0042842 Nckap1l protein_coding protein_coding MGP_AJ_T0006814.1 MGP_AJ_G0005611.1 mouse_genomes_project 15 98384879 98393787 - 5330439K02Rik lincRNA lincRNA MGP_AJ_T0102350.1 MGP_AJ_G0040092.1 mouse_genomes_project 15 72602407 72602636 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0040976.1 MGP_AJ_G0021831.1 mouse_genomes_project 15 55226565 55236931 - MGP_AJ_P0040976 Klhl38 protein_coding protein_coding MGP_AJ_T0042449.1 MGP_AJ_G0022271.1 mouse_genomes_project 15 96601267 96621259 - MGP_AJ_P0042449 Prkag1 protein_coding protein_coding MGP_AJ_T0041303.1 MGP_AJ_G0021935.1 mouse_genomes_project 15 73455816 73484480 - MGP_AJ_P0041303 Plec protein_coding protein_coding MGP_AJ_T0041304.1 MGP_AJ_G0021935.1 mouse_genomes_project 15 73455821 73491141 - MGP_AJ_P0041304 Plec protein_coding protein_coding MGP_AJ_T0041305.1 MGP_AJ_G0021935.1 mouse_genomes_project 15 73455821 73493985 - MGP_AJ_P0041305 Plec protein_coding protein_coding MGP_AJ_T0041306.1 MGP_AJ_G0021935.1 mouse_genomes_project 15 73455821 73516223 - MGP_AJ_P0041306 Plec protein_coding protein_coding MGP_AJ_T0041307.1 MGP_AJ_G0021935.1 mouse_genomes_project 15 73455821 73493073 - MGP_AJ_P0041307 Plec protein_coding protein_coding MGP_AJ_T0041308.1 MGP_AJ_G0021935.1 mouse_genomes_project 15 73455821 73484655 - MGP_AJ_P0041308 Plec protein_coding protein_coding MGP_AJ_T0041309.1 MGP_AJ_G0021935.1 mouse_genomes_project 15 73455822 73514342 - MGP_AJ_P0041309 Plec protein_coding protein_coding MGP_AJ_T0041310.1 MGP_AJ_G0021935.1 mouse_genomes_project 15 73455823 73485427 - MGP_AJ_P0041310 Plec protein_coding protein_coding MGP_AJ_T0041311.1 MGP_AJ_G0021935.1 mouse_genomes_project 15 73455823 73491142 - MGP_AJ_P0041311 Plec protein_coding protein_coding MGP_AJ_T0041312.1 MGP_AJ_G0021935.1 mouse_genomes_project 15 73455823 73483029 - MGP_AJ_P0041312 Plec protein_coding protein_coding MGP_AJ_T0041313.1 MGP_AJ_G0021935.1 mouse_genomes_project 15 73455823 73480530 - MGP_AJ_P0041313 Plec protein_coding protein_coding MGP_AJ_T0041314.1 MGP_AJ_G0021935.1 mouse_genomes_project 15 73460227 73472863 - MGP_AJ_P0041314 Plec protein_coding protein_coding MGP_AJ_T0041315.1 MGP_AJ_G0021935.1 mouse_genomes_project 15 73471430 73491141 - MGP_AJ_P0041315 Plec protein_coding protein_coding MGP_AJ_T0041316.1 MGP_AJ_G0021935.1 mouse_genomes_project 15 73473283 73516890 - MGP_AJ_P0041316 Plec protein_coding protein_coding MGP_AJ_T0041317.1 MGP_AJ_G0021935.1 mouse_genomes_project 15 73473283 73493073 - MGP_AJ_P0041317 Plec protein_coding protein_coding MGP_AJ_T0041318.1 MGP_AJ_G0021935.1 mouse_genomes_project 15 73473283 73484655 - MGP_AJ_P0041318 Plec protein_coding protein_coding MGP_AJ_T0041319.1 MGP_AJ_G0021935.1 mouse_genomes_project 15 73473360 73517415 - MGP_AJ_P0041319 Plec protein_coding protein_coding MGP_AJ_T0041320.1 MGP_AJ_G0021935.1 mouse_genomes_project 15 73479212 73485427 - MGP_AJ_P0041320 Plec protein_coding protein_coding MGP_AJ_T0041321.1 MGP_AJ_G0021935.1 mouse_genomes_project 15 73479212 73493985 - MGP_AJ_P0041321 Plec protein_coding protein_coding MGP_AJ_T0041322.1 MGP_AJ_G0021935.1 mouse_genomes_project 15 73515579 73517419 - Plec protein_coding retained_intron MGP_AJ_T0006788.1 MGP_AJ_G0005594.1 mouse_genomes_project 15 76373449 76377487 - Gm26634 lincRNA lincRNA MGP_AJ_T0041120.1 MGP_AJ_G0021880.1 mouse_genomes_project 15 70627146 70695138 + MGP_AJ_P0041120 Dennd3 protein_coding protein_coding MGP_AJ_T0041121.1 MGP_AJ_G0021880.1 mouse_genomes_project 15 70627258 70694995 + MGP_AJ_P0041121 Dennd3 protein_coding nonsense_mediated_decay MGP_AJ_T0041122.1 MGP_AJ_G0021880.1 mouse_genomes_project 15 70633162 70637946 + Dennd3 protein_coding processed_transcript MGP_AJ_T0041123.1 MGP_AJ_G0021880.1 mouse_genomes_project 15 70636742 70693850 + MGP_AJ_P0041123 Dennd3 protein_coding protein_coding MGP_AJ_T0041124.1 MGP_AJ_G0021880.1 mouse_genomes_project 15 70673038 70691003 + MGP_AJ_P0041124 Dennd3 protein_coding nonsense_mediated_decay MGP_AJ_T0041125.1 MGP_AJ_G0021880.1 mouse_genomes_project 15 70687757 70689973 + Dennd3 protein_coding retained_intron MGP_AJ_T0041126.1 MGP_AJ_G0021880.1 mouse_genomes_project 15 70689973 70693795 + Dennd3 protein_coding retained_intron MGP_AJ_T0013108.1 MGP_AJ_G0011203.1 mouse_genomes_project 15 89248402 89249845 - processed_pseudogene processed_pseudogene MGP_AJ_T0042021.1 MGP_AJ_G0022137.1 mouse_genomes_project 15 82021026 82090920 - MGP_AJ_P0042021 1810041L15Rik protein_coding protein_coding MGP_AJ_T0042022.1 MGP_AJ_G0022137.1 mouse_genomes_project 15 82021863 82089080 - MGP_AJ_P0042022 1810041L15Rik protein_coding protein_coding MGP_AJ_T0042023.1 MGP_AJ_G0022137.1 mouse_genomes_project 15 82048391 82089145 - MGP_AJ_P0042023 1810041L15Rik protein_coding protein_coding MGP_AJ_T0042024.1 MGP_AJ_G0022137.1 mouse_genomes_project 15 82059115 82086230 - MGP_AJ_P0042024 1810041L15Rik protein_coding protein_coding MGP_AJ_T0003626.1 MGP_AJ_G0003279.1 mouse_genomes_project 15 95497460 95505506 + Rapgef3os1 antisense antisense MGP_AJ_T0041930.1 MGP_AJ_G0022109.1 mouse_genomes_project 15 80144596 80148902 + MGP_AJ_P0041930 Cyp2d12 protein_coding protein_coding MGP_AJ_T0041590.1 MGP_AJ_G0022017.1 mouse_genomes_project 15 76411748 76431408 + Sh3bp1 protein_coding processed_transcript MGP_AJ_T0041591.1 MGP_AJ_G0022017.1 mouse_genomes_project 15 76411848 76424160 + MGP_AJ_P0041591 Sh3bp1 protein_coding protein_coding MGP_AJ_T0041592.1 MGP_AJ_G0022017.1 mouse_genomes_project 15 76411848 76424164 + MGP_AJ_P0041592 Sh3bp1 protein_coding nonsense_mediated_decay MGP_AJ_T0041593.1 MGP_AJ_G0022017.1 mouse_genomes_project 15 76411848 76424164 + MGP_AJ_P0041593 Sh3bp1 protein_coding nonsense_mediated_decay MGP_AJ_T0041594.1 MGP_AJ_G0022017.1 mouse_genomes_project 15 76411848 76424164 + MGP_AJ_P0041594 Sh3bp1 protein_coding protein_coding MGP_AJ_T0041595.1 MGP_AJ_G0022017.1 mouse_genomes_project 15 76411848 76424164 + MGP_AJ_P0041595 Sh3bp1 protein_coding protein_coding MGP_AJ_T0041596.1 MGP_AJ_G0022017.1 mouse_genomes_project 15 76426055 76431893 + MGP_AJ_P0041596 Sh3bp1 protein_coding protein_coding MGP_AJ_T0000936.1 MGP_AJ_G0000870.1 mouse_genomes_project 15 22331582 22332092 - TEC TEC MGP_AJ_T0041182.1 MGP_AJ_G0021900.1 mouse_genomes_project 15 71941895 71945043 - Gml2 protein_coding processed_transcript MGP_AJ_T0041183.1 MGP_AJ_G0021900.1 mouse_genomes_project 15 71941895 71945043 - Gml2 protein_coding processed_transcript MGP_AJ_T0041184.1 MGP_AJ_G0021900.1 mouse_genomes_project 15 71941895 71947568 - MGP_AJ_P0041184 Gml2 protein_coding protein_coding MGP_AJ_T0041146.1 MGP_AJ_G0021886.1 mouse_genomes_project 15 71639715 71713454 + MGP_AJ_P0041146 Adgrb1 protein_coding protein_coding MGP_AJ_T0041147.1 MGP_AJ_G0021886.1 mouse_genomes_project 15 71639959 71713454 + MGP_AJ_P0041147 Adgrb1 protein_coding nonsense_mediated_decay MGP_AJ_T0041148.1 MGP_AJ_G0021886.1 mouse_genomes_project 15 71640352 71713454 + MGP_AJ_P0041148 Adgrb1 protein_coding nonsense_mediated_decay MGP_AJ_T0041149.1 MGP_AJ_G0021886.1 mouse_genomes_project 15 71663900 71667023 + MGP_AJ_P0041149 Adgrb1 protein_coding protein_coding MGP_AJ_T0041150.1 MGP_AJ_G0021886.1 mouse_genomes_project 15 71685502 71698263 + MGP_AJ_P0041150 Adgrb1 protein_coding protein_coding MGP_AJ_T0041151.1 MGP_AJ_G0021886.1 mouse_genomes_project 15 71687596 71696351 + MGP_AJ_P0041151 Adgrb1 protein_coding protein_coding MGP_AJ_T0041152.1 MGP_AJ_G0021886.1 mouse_genomes_project 15 71688053 71713454 + MGP_AJ_P0041152 Adgrb1 protein_coding protein_coding MGP_AJ_T0041153.1 MGP_AJ_G0021886.1 mouse_genomes_project 15 71688074 71713433 + MGP_AJ_P0041153 Adgrb1 protein_coding protein_coding MGP_AJ_T0041154.1 MGP_AJ_G0021886.1 mouse_genomes_project 15 71688122 71697005 + MGP_AJ_P0041154 Adgrb1 protein_coding protein_coding MGP_AJ_T0041155.1 MGP_AJ_G0021886.1 mouse_genomes_project 15 71695098 71713455 + Adgrb1 protein_coding processed_transcript MGP_AJ_T0041156.1 MGP_AJ_G0021886.1 mouse_genomes_project 15 71698286 71713455 + MGP_AJ_P0041156 Adgrb1 protein_coding protein_coding MGP_AJ_T0011401.1 MGP_AJ_G0009523.1 mouse_genomes_project 15 101028183 101028358 + Gm28011 misc_RNA misc_RNA MGP_AJ_T0042450.1 MGP_AJ_G0022272.1 mouse_genomes_project 15 96621418 96661055 - MGP_AJ_P0042450 Kmt2d protein_coding unknown_likely_coding MGP_AJ_T0042451.1 MGP_AJ_G0022272.1 mouse_genomes_project 15 96621419 96660927 - MGP_AJ_P0042451 Kmt2d protein_coding protein_coding MGP_AJ_T0042452.1 MGP_AJ_G0022272.1 mouse_genomes_project 15 96621422 96660945 - MGP_AJ_P0042452 Kmt2d protein_coding protein_coding MGP_AJ_T0042453.1 MGP_AJ_G0022272.1 mouse_genomes_project 15 96624055 96626876 - MGP_AJ_P0042453 Kmt2d protein_coding protein_coding MGP_AJ_T0042454.1 MGP_AJ_G0022272.1 mouse_genomes_project 15 96644469 96646065 - MGP_AJ_P0042454 Kmt2d protein_coding protein_coding MGP_AJ_T0003610.1 MGP_AJ_G0003269.1 mouse_genomes_project 15 72943297 72945420 + Gm15945 antisense antisense MGP_AJ_T0042317.1 MGP_AJ_G0022225.1 mouse_genomes_project 15 93526708 93714772 + MGP_AJ_P0042317 Ano6 protein_coding protein_coding MGP_AJ_T0042318.1 MGP_AJ_G0022225.1 mouse_genomes_project 15 93526849 93714785 + MGP_AJ_P0042318 Ano6 protein_coding unknown_likely_coding MGP_AJ_T0100832.1 MGP_AJ_G0038798.1 mouse_genomes_project 15 38942184 38942286 + Gm24751 snoRNA snoRNA MGP_AJ_T0040854.1 MGP_AJ_G0021785.1 mouse_genomes_project 15 40228853 40261558 - MGP_AJ_P0040854 Eif3e protein_coding protein_coding MGP_AJ_T0041517.1 MGP_AJ_G0021987.1 mouse_genomes_project 15 74814391 74825744 - MGP_AJ_P0041517 Apol7c protein_coding protein_coding MGP_AJ_T0040483.1 MGP_AJ_G0021661.1 mouse_genomes_project 15 4049494 4111883 + MGP_AJ_P0040483 Lifr protein_coding protein_coding MGP_AJ_T0040484.1 MGP_AJ_G0021661.1 mouse_genomes_project 15 4049507 4105475 + MGP_AJ_P0040484 Lifr protein_coding protein_coding MGP_AJ_T0040485.1 MGP_AJ_G0021661.1 mouse_genomes_project 15 4074543 4117650 + MGP_AJ_P0040485 Lifr protein_coding protein_coding MGP_AJ_T0042411.1 MGP_AJ_G0022255.1 mouse_genomes_project 15 96209544 96214644 + MGP_AJ_P0042411 Olfr282 protein_coding protein_coding MGP_AJ_T0042412.1 MGP_AJ_G0022255.1 mouse_genomes_project 15 96214198 96215126 + MGP_AJ_P0042412 Olfr282 protein_coding protein_coding MGP_AJ_T0041745.1 MGP_AJ_G0022053.1 mouse_genomes_project 15 77608801 77614571 - protein_coding retained_intron MGP_AJ_T0041746.1 MGP_AJ_G0022053.1 mouse_genomes_project 15 77608802 77615341 - protein_coding retained_intron MGP_AJ_T0041747.1 MGP_AJ_G0022053.1 mouse_genomes_project 15 77608803 77615341 - MGP_AJ_P0041747 protein_coding protein_coding MGP_AJ_T0041748.1 MGP_AJ_G0022053.1 mouse_genomes_project 15 77612164 77615321 - MGP_AJ_P0041748 protein_coding nonsense_mediated_decay MGP_AJ_T0041749.1 MGP_AJ_G0022053.1 mouse_genomes_project 15 77612649 77623960 - MGP_AJ_P0041749 protein_coding protein_coding MGP_AJ_T0041750.1 MGP_AJ_G0022053.1 mouse_genomes_project 15 77613736 77615325 - protein_coding retained_intron MGP_AJ_T0041429.1 MGP_AJ_G0021958.1 mouse_genomes_project 15 73878543 73892706 - MGP_AJ_P0041429 Cpsf1 protein_coding protein_coding MGP_AJ_T0042150.1 MGP_AJ_G0022179.1 mouse_genomes_project 15 86866031 86873151 - MGP_AJ_P0042150 Mapk11 protein_coding protein_coding MGP_AJ_T0041558.1 MGP_AJ_G0022003.1 mouse_genomes_project 15 75905057 75912349 + MGP_AJ_P0041558 Mpst protein_coding protein_coding MGP_AJ_T0041559.1 MGP_AJ_G0022003.1 mouse_genomes_project 15 75905146 75912349 + MGP_AJ_P0041559 Mpst protein_coding protein_coding MGP_AJ_T0041560.1 MGP_AJ_G0022003.1 mouse_genomes_project 15 75905451 75912349 + MGP_AJ_P0041560 Mpst protein_coding protein_coding MGP_AJ_T0100828.1 MGP_AJ_G0038794.1 mouse_genomes_project 15 31339964 31340016 - Gm25809 snoRNA snoRNA MGP_AJ_T0042809.1 MGP_AJ_G0022394.1 mouse_genomes_project 15 101098024 101116018 + MGP_AJ_P0042809 Hoxc4 protein_coding protein_coding MGP_AJ_T0042810.1 MGP_AJ_G0022394.1 mouse_genomes_project 15 101114007 101116465 + MGP_AJ_P0042810 Hoxc4 protein_coding protein_coding MGP_AJ_T0100839.1 MGP_AJ_G0038805.1 mouse_genomes_project 15 54953695 54953831 - Gm22299 snoRNA snoRNA MGP_AJ_T0042773.1 MGP_AJ_G0022382.1 mouse_genomes_project 15 100588374 100689052 - MGP_AJ_P0042773 protein_coding nonsense_mediated_decay MGP_AJ_T0040959.1 MGP_AJ_G0021825.1 mouse_genomes_project 15 54931443 54945152 - MGP_AJ_P0040959 protein_coding unknown_likely_coding MGP_AJ_T0040960.1 MGP_AJ_G0021825.1 mouse_genomes_project 15 54933221 54938847 - protein_coding processed_transcript MGP_AJ_T0040962.1 MGP_AJ_G0021825.1 mouse_genomes_project 15 54939763 54945142 - MGP_AJ_P0040962 protein_coding nonsense_mediated_decay MGP_AJ_T0040963.1 MGP_AJ_G0021825.1 mouse_genomes_project 15 54941907 54945277 - MGP_AJ_P0040963 protein_coding protein_coding MGP_AJ_T0041638.1 MGP_AJ_G0022027.1 mouse_genomes_project 15 76657386 76667149 + MGP_AJ_P0041638 Polr2f protein_coding protein_coding MGP_AJ_T0041248.1 MGP_AJ_G0021919.1 mouse_genomes_project 15 73166040 73170673 - MGP_AJ_P0041248 Mroh6 protein_coding protein_coding MGP_AJ_T0000930.1 MGP_AJ_G0000864.1 mouse_genomes_project 15 3913725 3920197 + TEC TEC MGP_AJ_T0099555.1 MGP_AJ_G0037521.1 mouse_genomes_project 15 57035827 57035934 + Gm25875 snRNA snRNA MGP_AJ_T0040986.1 MGP_AJ_G0021838.1 mouse_genomes_project 15 55824717 55838173 + MGP_AJ_P0040986 Rnf139 protein_coding protein_coding MGP_AJ_T0042536.1 MGP_AJ_G0022300.1 mouse_genomes_project 15 97541499 97543802 + MGP_AJ_P0042536 Cox14 protein_coding protein_coding MGP_AJ_T0041458.1 MGP_AJ_G0021967.1 mouse_genomes_project 15 73990839 73997615 - MGP_AJ_P0041458 Recql4 protein_coding protein_coding MGP_AJ_T0040948.1 MGP_AJ_G0021822.1 mouse_genomes_project 15 54782394 54805537 - MGP_AJ_P0040948 Derl1 protein_coding protein_coding MGP_AJ_T0042566.1 MGP_AJ_G0022311.1 mouse_genomes_project 15 98217403 98307979 + MGP_AJ_P0042566 Methig1 protein_coding protein_coding MGP_AJ_T0042567.1 MGP_AJ_G0022311.1 mouse_genomes_project 15 98217420 98307852 + MGP_AJ_P0042567 Methig1 protein_coding nonsense_mediated_decay MGP_AJ_T0041356.1 MGP_AJ_G0021943.1 mouse_genomes_project 15 73631503 73633915 + MGP_AJ_P0041356 Cyc1 protein_coding protein_coding MGP_AJ_T0013085.1 MGP_AJ_G0011180.1 mouse_genomes_project 15 56949088 56950095 - processed_pseudogene processed_pseudogene MGP_AJ_T0041020.1 MGP_AJ_G0021854.1 mouse_genomes_project 15 60929949 60972358 - MGP_AJ_P0041020 Fam49b protein_coding unknown_likely_coding MGP_AJ_T0042413.1 MGP_AJ_G0022256.1 mouse_genomes_project 15 96233325 96234383 + MGP_AJ_P0042413 Olfr281 protein_coding protein_coding MGP_AJ_T0041177.1 MGP_AJ_G0021897.1 mouse_genomes_project 15 71899412 71907329 - MGP_AJ_P0041177 D730001G18Rik protein_coding protein_coding MGP_AJ_T0041178.1 MGP_AJ_G0021897.1 mouse_genomes_project 15 71899413 71907364 - MGP_AJ_P0041178 D730001G18Rik protein_coding protein_coding MGP_AJ_T0017450.1 MGP_AJ_G0015268.1 mouse_genomes_project 15 53597921 53602438 + Has2os processed_transcript antisense MGP_AJ_T0017451.1 MGP_AJ_G0015268.1 mouse_genomes_project 15 53601529 53686890 + Has2os processed_transcript antisense MGP_AJ_T0017452.1 MGP_AJ_G0015268.1 mouse_genomes_project 15 53601931 53686606 + Has2os processed_transcript antisense MGP_AJ_T0017453.1 MGP_AJ_G0015268.1 mouse_genomes_project 15 53674060 53686569 + Has2os processed_transcript lincRNA MGP_AJ_T0100817.1 MGP_AJ_G0038783.1 mouse_genomes_project 15 17216205 17216335 + Gm25976 snoRNA snoRNA MGP_AJ_T0042633.1 MGP_AJ_G0022326.1 mouse_genomes_project 15 99075871 99080137 + MGP_AJ_P0042633 Ankrd33 protein_coding protein_coding MGP_AJ_T0010080.1 MGP_AJ_G0008202.1 mouse_genomes_project 15 83371907 83372002 + Mirlet7c-2 miRNA miRNA MGP_AJ_T0040530.1 MGP_AJ_G0021673.1 mouse_genomes_project 15 6190592 6226894 + Ugt3a1 protein_coding processed_transcript MGP_AJ_T0040531.1 MGP_AJ_G0021673.1 mouse_genomes_project 15 6196742 6231524 + MGP_AJ_P0040531 Ugt3a1 protein_coding protein_coding MGP_AJ_T0040532.1 MGP_AJ_G0021673.1 mouse_genomes_project 15 6196761 6222473 + Ugt3a1 protein_coding processed_transcript MGP_AJ_T0040533.1 MGP_AJ_G0021673.1 mouse_genomes_project 15 6196763 6222395 + Ugt3a1 protein_coding processed_transcript MGP_AJ_T0040534.1 MGP_AJ_G0021673.1 mouse_genomes_project 15 6200498 6209143 + MGP_AJ_P0040534 Ugt3a1 protein_coding protein_coding MGP_AJ_T0042475.1 MGP_AJ_G0022284.1 mouse_genomes_project 15 97047391 97055049 - MGP_AJ_P0042475 Mcrs1 protein_coding protein_coding MGP_AJ_T0101734.1 MGP_AJ_G0039669.1 mouse_genomes_project 15 76771649 76772166 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0040476.1 MGP_AJ_G0021659.1 mouse_genomes_project 15 3624241 3717863 + MGP_AJ_P0040476 Rictor protein_coding protein_coding MGP_AJ_T0041758.1 MGP_AJ_G0022058.1 mouse_genomes_project 15 77787369 77789726 + MGP_AJ_P0041758 Atf4 protein_coding protein_coding MGP_AJ_T0042014.1 MGP_AJ_G0022136.1 mouse_genomes_project 15 81965543 81968564 + Parvg protein_coding processed_transcript MGP_AJ_T0042015.1 MGP_AJ_G0022136.1 mouse_genomes_project 15 81966237 81984289 + MGP_AJ_P0042015 Parvg protein_coding protein_coding MGP_AJ_T0042016.1 MGP_AJ_G0022136.1 mouse_genomes_project 15 81966251 81970404 + MGP_AJ_P0042016 Parvg protein_coding nonsense_mediated_decay MGP_AJ_T0042017.1 MGP_AJ_G0022136.1 mouse_genomes_project 15 81966279 81970390 + MGP_AJ_P0042017 Parvg protein_coding nonsense_mediated_decay MGP_AJ_T0042018.1 MGP_AJ_G0022136.1 mouse_genomes_project 15 81966312 81971609 + Parvg protein_coding processed_transcript MGP_AJ_T0042019.1 MGP_AJ_G0022136.1 mouse_genomes_project 15 81967632 81970440 + MGP_AJ_P0042019 Parvg protein_coding protein_coding MGP_AJ_T0042020.1 MGP_AJ_G0022136.1 mouse_genomes_project 15 81967632 81984325 + MGP_AJ_P0042020 Parvg protein_coding protein_coding MGP_AJ_T0099568.1 MGP_AJ_G0037534.1 mouse_genomes_project 15 77620364 77620471 - Gm24204 snRNA snRNA MGP_AJ_T0099531.1 MGP_AJ_G0037497.1 mouse_genomes_project 15 475420 475546 - Gm22031 snRNA snRNA MGP_AJ_T0040443.1 MGP_AJ_G0021652.1 mouse_genomes_project 15 2036283 2036854 - MGP_AJ_P0040443 Gm10250 protein_coding protein_coding MGP_AJ_T0042497.1 MGP_AJ_G0022288.1 mouse_genomes_project 15 97202615 97219775 + MGP_AJ_P0042497 Tmbim6 protein_coding protein_coding MGP_AJ_T0042498.1 MGP_AJ_G0022288.1 mouse_genomes_project 15 97202719 97218360 + MGP_AJ_P0042498 Tmbim6 protein_coding protein_coding MGP_AJ_T0042499.1 MGP_AJ_G0022288.1 mouse_genomes_project 15 97202719 97218262 + MGP_AJ_P0042499 Tmbim6 protein_coding protein_coding MGP_AJ_T0042500.1 MGP_AJ_G0022288.1 mouse_genomes_project 15 97202755 97218217 + MGP_AJ_P0042500 Tmbim6 protein_coding protein_coding MGP_AJ_T0042501.1 MGP_AJ_G0022288.1 mouse_genomes_project 15 97202952 97218261 + MGP_AJ_P0042501 Tmbim6 protein_coding protein_coding MGP_AJ_T0042502.1 MGP_AJ_G0022288.1 mouse_genomes_project 15 97203326 97216400 + MGP_AJ_P0042502 Tmbim6 protein_coding protein_coding MGP_AJ_T0042503.1 MGP_AJ_G0022288.1 mouse_genomes_project 15 97203344 97218336 + MGP_AJ_P0042503 Tmbim6 protein_coding protein_coding MGP_AJ_T0042504.1 MGP_AJ_G0022288.1 mouse_genomes_project 15 97210621 97211639 + MGP_AJ_P0042504 Tmbim6 protein_coding protein_coding MGP_AJ_T0042505.1 MGP_AJ_G0022288.1 mouse_genomes_project 15 97215402 97218517 + Tmbim6 protein_coding retained_intron MGP_AJ_T0040801.1 MGP_AJ_G0021764.1 mouse_genomes_project 15 35000989 35042416 - MGP_AJ_P0040801 Rrm2b protein_coding protein_coding MGP_AJ_T0040802.1 MGP_AJ_G0021764.1 mouse_genomes_project 15 35004062 35042204 - MGP_AJ_P0040802 Rrm2b protein_coding unknown_likely_coding MGP_AJ_T0040803.1 MGP_AJ_G0021764.1 mouse_genomes_project 15 35004779 35042204 - MGP_AJ_P0040803 Rrm2b protein_coding nonsense_mediated_decay MGP_AJ_T0040804.1 MGP_AJ_G0021764.1 mouse_genomes_project 15 35004779 35042204 - MGP_AJ_P0040804 Rrm2b protein_coding protein_coding MGP_AJ_T0040805.1 MGP_AJ_G0021764.1 mouse_genomes_project 15 35004779 35042204 - MGP_AJ_P0040805 Rrm2b protein_coding protein_coding MGP_AJ_T0040806.1 MGP_AJ_G0021764.1 mouse_genomes_project 15 35012750 35042242 - MGP_AJ_P0040806 Rrm2b protein_coding nonsense_mediated_decay MGP_AJ_T0040807.1 MGP_AJ_G0021764.1 mouse_genomes_project 15 35026554 35036473 - Rrm2b protein_coding retained_intron MGP_AJ_T0040808.1 MGP_AJ_G0021764.1 mouse_genomes_project 15 35026659 35042162 - MGP_AJ_P0040808 Rrm2b protein_coding protein_coding MGP_AJ_T0040809.1 MGP_AJ_G0021764.1 mouse_genomes_project 15 35028258 35042631 - MGP_AJ_P0040809 Rrm2b protein_coding protein_coding MGP_AJ_T0042455.1 MGP_AJ_G0022273.1 mouse_genomes_project 15 96667461 96671089 - MGP_AJ_P0042455 Rhebl1 protein_coding protein_coding MGP_AJ_T0042456.1 MGP_AJ_G0022273.1 mouse_genomes_project 15 96667729 96670775 - Rhebl1 protein_coding processed_transcript MGP_AJ_T0042457.1 MGP_AJ_G0022273.1 mouse_genomes_project 15 96669216 96670431 - Rhebl1 protein_coding retained_intron MGP_AJ_T0099544.1 MGP_AJ_G0037510.1 mouse_genomes_project 15 41911065 41911158 + Gm24768 snRNA snRNA MGP_AJ_T0041925.1 MGP_AJ_G0022105.1 mouse_genomes_project 15 79925379 79929508 - MGP_AJ_P0041925 Ndufa6 protein_coding protein_coding MGP_AJ_T0040638.1 MGP_AJ_G0021705.1 mouse_genomes_project 15 18145967 18617991 + MGP_AJ_P0040638 Cdh12 protein_coding protein_coding MGP_AJ_T0041064.1 MGP_AJ_G0021863.1 mouse_genomes_project 15 63383293 63507914 - MGP_AJ_P0041064 Lrrc6 protein_coding protein_coding MGP_AJ_T0042830.1 MGP_AJ_G0022401.1 mouse_genomes_project 15 101397842 101425010 - MGP_AJ_P0042830 Zfp385a protein_coding protein_coding MGP_AJ_T0041507.1 MGP_AJ_G0021981.1 mouse_genomes_project 15 74684210 74747004 - protein_coding retained_intron MGP_AJ_T0041513.1 MGP_AJ_G0021981.1 mouse_genomes_project 15 74722744 74746951 - MGP_AJ_P0041513 protein_coding protein_coding MGP_AJ_T0099570.1 MGP_AJ_G0037536.1 mouse_genomes_project 15 79144606 79144713 + Gm22067 snRNA snRNA MGP_AJ_T0101960.1 MGP_AJ_G0039800.1 mouse_genomes_project 15 72512694 72516465 + transcribed_unprocessed_pseudogene processed_transcript MGP_AJ_T0101961.1 MGP_AJ_G0039800.1 mouse_genomes_project 15 72513009 72516164 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_AJ_T0042676.1 MGP_AJ_G0022352.1 mouse_genomes_project 15 99874684 99881578 - MGP_AJ_P0042676 Krt1 protein_coding protein_coding MGP_AJ_T0042445.1 MGP_AJ_G0022268.1 mouse_genomes_project 15 96559637 96566004 - MGP_AJ_P0042445 Wnt10b protein_coding protein_coding MGP_AJ_T0042446.1 MGP_AJ_G0022268.1 mouse_genomes_project 15 96560084 96565119 - MGP_AJ_P0042446 Wnt10b protein_coding protein_coding MGP_AJ_T0010073.1 MGP_AJ_G0008195.1 mouse_genomes_project 15 80222852 80222909 - miRNA miRNA MGP_AJ_T0042648.1 MGP_AJ_G0022331.1 mouse_genomes_project 15 99248257 99254891 + MGP_AJ_P0042648 Atg101 protein_coding protein_coding MGP_AJ_T0040676.1 MGP_AJ_G0021720.1 mouse_genomes_project 15 25300295 25558775 + MGP_AJ_P0040676 Dnah5 protein_coding protein_coding MGP_AJ_T0042515.1 MGP_AJ_G0022294.1 mouse_genomes_project 15 97414951 97418908 + MGP_AJ_P0042515 Aqp6 protein_coding protein_coding MGP_AJ_T0042844.1 MGP_AJ_G0022407.1 mouse_genomes_project 15 101609619 101617256 - MGP_AJ_P0042844 Ppp1r1a protein_coding protein_coding MGP_AJ_T0042241.1 MGP_AJ_G0022201.1 mouse_genomes_project 15 87513159 87572594 - MGP_AJ_P0042241 Syt10 protein_coding protein_coding MGP_AJ_T0099553.1 MGP_AJ_G0037519.1 mouse_genomes_project 15 55055504 55055566 - Gm23475 snRNA snRNA MGP_AJ_T0003628.1 MGP_AJ_G0003281.1 mouse_genomes_project 15 95836287 95838776 + Gm26513 antisense antisense MGP_AJ_T0042459.1 MGP_AJ_G0022275.1 mouse_genomes_project 15 96693534 96707393 - MGP_AJ_P0042459 Lmbr1l protein_coding protein_coding MGP_AJ_T0042460.1 MGP_AJ_G0022275.1 mouse_genomes_project 15 96695784 96698409 - Lmbr1l protein_coding processed_transcript MGP_AJ_T0042461.1 MGP_AJ_G0022275.1 mouse_genomes_project 15 96696653 96698735 - Lmbr1l protein_coding retained_intron MGP_AJ_T0042462.1 MGP_AJ_G0022275.1 mouse_genomes_project 15 96697351 96698932 - Lmbr1l protein_coding retained_intron MGP_AJ_T0042463.1 MGP_AJ_G0022275.1 mouse_genomes_project 15 96702973 96707527 - Lmbr1l protein_coding processed_transcript MGP_AJ_T0042464.1 MGP_AJ_G0022275.1 mouse_genomes_project 15 96704647 96707222 - Lmbr1l protein_coding processed_transcript MGP_AJ_T0041012.1 MGP_AJ_G0021851.1 mouse_genomes_project 15 60796701 60915385 - MGP_AJ_P0041012 protein_coding protein_coding MGP_AJ_T0041013.1 MGP_AJ_G0021851.1 mouse_genomes_project 15 60796829 60823890 - MGP_AJ_P0041013 protein_coding protein_coding MGP_AJ_T0041015.1 MGP_AJ_G0021851.1 mouse_genomes_project 15 60877260 60890698 - MGP_AJ_P0041015 protein_coding protein_coding MGP_AJ_T0010084.1 MGP_AJ_G0008206.1 mouse_genomes_project 15 86887547 86887608 - Mir7118 miRNA miRNA MGP_AJ_T0040886.1 MGP_AJ_G0021797.1 mouse_genomes_project 15 48711172 48791801 - MGP_AJ_P0040886 Eif3h protein_coding protein_coding MGP_AJ_T0041430.1 MGP_AJ_G0021959.1 mouse_genomes_project 15 73897233 73901693 - MGP_AJ_P0041430 Slc39a4 protein_coding protein_coding MGP_AJ_T0098595.1 MGP_AJ_G0036579.1 mouse_genomes_project 15 27636984 27637103 + Gm23956 rRNA rRNA MGP_AJ_T0006752.1 MGP_AJ_G0005571.1 mouse_genomes_project 15 22098283 22148670 - Gm2824 lincRNA lincRNA MGP_AJ_T0006753.1 MGP_AJ_G0005571.1 mouse_genomes_project 15 22125931 22148613 - Gm2824 lincRNA lincRNA MGP_AJ_T0013057.1 MGP_AJ_G0011152.1 mouse_genomes_project 15 4261220 4261823 + processed_pseudogene processed_pseudogene MGP_AJ_T0042693.1 MGP_AJ_G0022364.1 mouse_genomes_project 15 100236063 100249552 - MGP_AJ_P0042693 Csad protein_coding protein_coding MGP_AJ_T0040965.1 MGP_AJ_G0021827.1 mouse_genomes_project 15 54959224 54988543 - MGP_AJ_P0040965 Zhx1 protein_coding protein_coding MGP_AJ_T0040966.1 MGP_AJ_G0021827.1 mouse_genomes_project 15 54959224 54988787 - MGP_AJ_P0040966 Zhx1 protein_coding protein_coding MGP_AJ_T0040967.1 MGP_AJ_G0021827.1 mouse_genomes_project 15 54959526 54988767 - MGP_AJ_P0040967 Zhx1 protein_coding protein_coding MGP_AJ_T0040970.1 MGP_AJ_G0021827.1 mouse_genomes_project 15 54965201 54988512 - MGP_AJ_P0040970 Zhx1 protein_coding protein_coding MGP_AJ_T0040971.1 MGP_AJ_G0021827.1 mouse_genomes_project 15 54967135 54988661 - Zhx1 protein_coding retained_intron MGP_AJ_T0040972.1 MGP_AJ_G0021827.1 mouse_genomes_project 15 54980957 54988839 - Zhx1 protein_coding retained_intron MGP_AJ_T0041381.1 MGP_AJ_G0021946.1 mouse_genomes_project 15 73644641 73651771 + MGP_AJ_P0041381 unknown_likely_coding unknown_likely_coding MGP_AJ_T0042663.1 MGP_AJ_G0022340.1 mouse_genomes_project 15 99524034 99533557 - MGP_AJ_P0042663 Krt82 protein_coding protein_coding MGP_AJ_T0042469.1 MGP_AJ_G0022279.1 mouse_genomes_project 15 96874512 96884445 + MGP_AJ_P0042469 Troap protein_coding protein_coding MGP_AJ_T0100845.1 MGP_AJ_G0038811.1 mouse_genomes_project 15 66684279 66684408 - Gm23987 snoRNA snoRNA MGP_AJ_T0040661.1 MGP_AJ_G0021711.1 mouse_genomes_project 15 22950966 23081041 + MGP_AJ_P0040661 Fam134b protein_coding protein_coding MGP_AJ_T0040662.1 MGP_AJ_G0021711.1 mouse_genomes_project 15 23048235 23079693 + MGP_AJ_P0040662 Fam134b protein_coding protein_coding MGP_AJ_T0042670.1 MGP_AJ_G0022347.1 mouse_genomes_project 15 99762596 99771752 - MGP_AJ_P0042670 Krt71 protein_coding protein_coding MGP_AJ_T0000939.1 MGP_AJ_G0000873.1 mouse_genomes_project 15 65325934 65330937 - TEC TEC MGP_AJ_T0098596.1 MGP_AJ_G0036580.1 mouse_genomes_project 15 30654588 30654719 - Gm24476 rRNA rRNA MGP_AJ_T0042582.1 MGP_AJ_G0022317.1 mouse_genomes_project 15 98514506 98523713 - MGP_AJ_P0042582 Pou6f1 protein_coding protein_coding MGP_AJ_T0042583.1 MGP_AJ_G0022317.1 mouse_genomes_project 15 98514508 98538670 - MGP_AJ_P0042583 Pou6f1 protein_coding protein_coding MGP_AJ_T0042584.1 MGP_AJ_G0022317.1 mouse_genomes_project 15 98514508 98530238 - MGP_AJ_P0042584 Pou6f1 protein_coding nonsense_mediated_decay MGP_AJ_T0042585.1 MGP_AJ_G0022317.1 mouse_genomes_project 15 98514511 98519422 - Pou6f1 protein_coding retained_intron MGP_AJ_T0042586.1 MGP_AJ_G0022317.1 mouse_genomes_project 15 98517437 98533338 - MGP_AJ_P0042586 Pou6f1 protein_coding nonsense_mediated_decay MGP_AJ_T0042587.1 MGP_AJ_G0022317.1 mouse_genomes_project 15 98517437 98533338 - MGP_AJ_P0042587 Pou6f1 protein_coding nonsense_mediated_decay MGP_AJ_T0042588.1 MGP_AJ_G0022317.1 mouse_genomes_project 15 98524599 98530341 - Pou6f1 protein_coding retained_intron MGP_AJ_T0042589.1 MGP_AJ_G0022317.1 mouse_genomes_project 15 98524924 98538550 - Pou6f1 protein_coding processed_transcript MGP_AJ_T0042590.1 MGP_AJ_G0022317.1 mouse_genomes_project 15 98526933 98538550 - Pou6f1 protein_coding processed_transcript MGP_AJ_T0040961.1 MGP_AJ_G0021826.1 mouse_genomes_project 15 54939194 54988723 - MGP_AJ_P0040961 Gm29394 protein_coding protein_coding MGP_AJ_T0040964.1 MGP_AJ_G0021826.1 mouse_genomes_project 15 54941910 54988505 - MGP_AJ_P0040964 Gm29394 protein_coding protein_coding MGP_AJ_T0040968.1 MGP_AJ_G0021826.1 mouse_genomes_project 15 54960768 54988481 - MGP_AJ_P0040968 Gm29394 protein_coding protein_coding MGP_AJ_T0040969.1 MGP_AJ_G0021826.1 mouse_genomes_project 15 54960887 54988504 - MGP_AJ_P0040969 Gm29394 protein_coding protein_coding MGP_AJ_T0040797.1 MGP_AJ_G0021763.1 mouse_genomes_project 15 34510341 34525432 + MGP_AJ_P0040797 4930447A16Rik protein_coding protein_coding MGP_AJ_T0040907.1 MGP_AJ_G0021809.1 mouse_genomes_project 15 51660977 51670208 + MGP_AJ_P0040907 Nov protein_coding protein_coding MGP_AJ_T0041782.1 MGP_AJ_G0022066.1 mouse_genomes_project 15 78525050 78553215 + MGP_AJ_P0041782 Sgsm3 protein_coding nonsense_mediated_decay MGP_AJ_T0041783.1 MGP_AJ_G0022066.1 mouse_genomes_project 15 78525070 78558990 + Sgsm3 protein_coding processed_transcript MGP_AJ_T0041784.1 MGP_AJ_G0022066.1 mouse_genomes_project 15 78525074 78558782 + MGP_AJ_P0041784 Sgsm3 protein_coding protein_coding MGP_AJ_T0041785.1 MGP_AJ_G0022066.1 mouse_genomes_project 15 78525091 78550885 + Sgsm3 protein_coding processed_transcript MGP_AJ_T0041786.1 MGP_AJ_G0022066.1 mouse_genomes_project 15 78525091 78553197 + MGP_AJ_P0041786 Sgsm3 protein_coding protein_coding MGP_AJ_T0041787.1 MGP_AJ_G0022066.1 mouse_genomes_project 15 78525108 78550885 + Sgsm3 protein_coding processed_transcript MGP_AJ_T0041789.1 MGP_AJ_G0022066.1 mouse_genomes_project 15 78554637 78556651 + Sgsm3 protein_coding retained_intron MGP_AJ_T0041790.1 MGP_AJ_G0022066.1 mouse_genomes_project 15 78555058 78557237 + MGP_AJ_P0041790 Sgsm3 protein_coding protein_coding MGP_AJ_T0041791.1 MGP_AJ_G0022066.1 mouse_genomes_project 15 78555949 78557000 + Sgsm3 protein_coding retained_intron MGP_AJ_T0041792.1 MGP_AJ_G0022066.1 mouse_genomes_project 15 78556558 78558590 + Sgsm3 protein_coding retained_intron MGP_AJ_T0041793.1 MGP_AJ_G0022066.1 mouse_genomes_project 15 78557335 78558457 + Sgsm3 protein_coding retained_intron MGP_AJ_T0041794.1 MGP_AJ_G0022066.1 mouse_genomes_project 15 78557425 78558442 + Sgsm3 protein_coding retained_intron MGP_AJ_T0041795.1 MGP_AJ_G0022066.1 mouse_genomes_project 15 78557577 78558336 + Sgsm3 protein_coding retained_intron MGP_AJ_T0006751.1 MGP_AJ_G0005570.1 mouse_genomes_project 15 15086252 15174622 - 4921515E04Rik lincRNA lincRNA MGP_AJ_T0040558.1 MGP_AJ_G0021680.1 mouse_genomes_project 15 7297310 7310991 + MGP_AJ_P0040558 Agxt2 protein_coding protein_coding MGP_AJ_T0040559.1 MGP_AJ_G0021680.1 mouse_genomes_project 15 7297315 7343258 + MGP_AJ_P0040559 Agxt2 protein_coding protein_coding MGP_AJ_T0040560.1 MGP_AJ_G0021680.1 mouse_genomes_project 15 7297315 7317819 + MGP_AJ_P0040560 Agxt2 protein_coding protein_coding MGP_AJ_T0040561.1 MGP_AJ_G0021680.1 mouse_genomes_project 15 7297357 7342843 + MGP_AJ_P0040561 Agxt2 protein_coding protein_coding MGP_AJ_T0040672.1 MGP_AJ_G0021717.1 mouse_genomes_project 15 24693990 24718882 - MGP_AJ_P0040672 Otulin protein_coding protein_coding MGP_AJ_T0040609.1 MGP_AJ_G0021698.1 mouse_genomes_project 15 9291637 9523878 - MGP_AJ_P0040609 Pdzd2 protein_coding protein_coding MGP_AJ_T0040610.1 MGP_AJ_G0021698.1 mouse_genomes_project 15 9331763 9334593 - Pdzd2 protein_coding retained_intron MGP_AJ_T0040611.1 MGP_AJ_G0021698.1 mouse_genomes_project 15 9338214 9345748 - Pdzd2 protein_coding retained_intron MGP_AJ_T0040612.1 MGP_AJ_G0021698.1 mouse_genomes_project 15 9340564 9479908 - MGP_AJ_P0040612 Pdzd2 protein_coding protein_coding MGP_AJ_T0040613.1 MGP_AJ_G0021698.1 mouse_genomes_project 15 9376813 9671982 - Pdzd2 protein_coding retained_intron MGP_AJ_T0040614.1 MGP_AJ_G0021698.1 mouse_genomes_project 15 9391637 9427953 - MGP_AJ_P0040614 Pdzd2 protein_coding protein_coding MGP_AJ_T0040615.1 MGP_AJ_G0021698.1 mouse_genomes_project 15 9391677 9480507 - MGP_AJ_P0040615 Pdzd2 protein_coding protein_coding MGP_AJ_T0040616.1 MGP_AJ_G0021698.1 mouse_genomes_project 15 9456895 9480415 - Pdzd2 protein_coding processed_transcript MGP_AJ_T0040617.1 MGP_AJ_G0021698.1 mouse_genomes_project 15 9475406 9479911 - Pdzd2 protein_coding retained_intron MGP_AJ_T0040618.1 MGP_AJ_G0021698.1 mouse_genomes_project 15 9479692 9480862 - Pdzd2 protein_coding retained_intron MGP_AJ_T0040619.1 MGP_AJ_G0021698.1 mouse_genomes_project 15 9519834 9531069 - Pdzd2 protein_coding processed_transcript MGP_AJ_T0010046.1 MGP_AJ_G0008168.1 mouse_genomes_project 15 59595461 59595531 - Gm24810 miRNA miRNA MGP_AJ_T0100853.1 MGP_AJ_G0038819.1 mouse_genomes_project 15 92728576 92728708 - Gm23129 snoRNA snoRNA MGP_AJ_T0041603.1 MGP_AJ_G0022020.1 mouse_genomes_project 15 76460428 76481851 + Triobp protein_coding processed_transcript MGP_AJ_T0041604.1 MGP_AJ_G0022020.1 mouse_genomes_project 15 76460428 76518680 + MGP_AJ_P0041604 Triobp protein_coding protein_coding MGP_AJ_T0041605.1 MGP_AJ_G0022020.1 mouse_genomes_project 15 76460428 76518378 + MGP_AJ_P0041605 Triobp protein_coding protein_coding MGP_AJ_T0041606.1 MGP_AJ_G0022020.1 mouse_genomes_project 15 76460950 76466107 + Triobp protein_coding retained_intron MGP_AJ_T0041607.1 MGP_AJ_G0022020.1 mouse_genomes_project 15 76495865 76518677 + MGP_AJ_P0041607 Triobp protein_coding protein_coding MGP_AJ_T0041608.1 MGP_AJ_G0022020.1 mouse_genomes_project 15 76495880 76518675 + MGP_AJ_P0041608 Triobp protein_coding protein_coding MGP_AJ_T0041609.1 MGP_AJ_G0022020.1 mouse_genomes_project 15 76495902 76507679 + MGP_AJ_P0041609 Triobp protein_coding protein_coding MGP_AJ_T0041610.1 MGP_AJ_G0022020.1 mouse_genomes_project 15 76496530 76504260 + MGP_AJ_P0041610 Triobp protein_coding protein_coding MGP_AJ_T0041611.1 MGP_AJ_G0022020.1 mouse_genomes_project 15 76514999 76517515 + Triobp protein_coding processed_transcript MGP_AJ_T0013058.1 MGP_AJ_G0011153.1 mouse_genomes_project 15 5462706 5463006 - processed_pseudogene processed_pseudogene MGP_AJ_T0040946.1 MGP_AJ_G0021821.1 mouse_genomes_project 15 54601929 54750809 + MGP_AJ_P0040946 Zhx2 protein_coding protein_coding MGP_AJ_T0040947.1 MGP_AJ_G0021821.1 mouse_genomes_project 15 54602993 54729620 + Zhx2 protein_coding processed_transcript MGP_AJ_T0099567.1 MGP_AJ_G0037533.1 mouse_genomes_project 15 75275591 75275691 - Gm22107 snRNA snRNA MGP_AJ_T0010029.1 MGP_AJ_G0008151.1 mouse_genomes_project 15 11710634 11710839 - Gm24080 miRNA miRNA MGP_AJ_T0040494.1 MGP_AJ_G0021664.1 mouse_genomes_project 15 4783871 5013010 - MGP_AJ_P0040494 Wdr70 protein_coding protein_coding MGP_AJ_T0040580.1 MGP_AJ_G0021685.1 mouse_genomes_project 15 7501961 7646685 - MGP_AJ_P0040580 Rai14 protein_coding protein_coding MGP_AJ_T0040581.1 MGP_AJ_G0021685.1 mouse_genomes_project 15 7501961 7647776 - MGP_AJ_P0040581 Rai14 protein_coding protein_coding MGP_AJ_T0041384.1 MGP_AJ_G0021949.1 mouse_genomes_project 15 73669376 73728765 + Mroh1 protein_coding processed_transcript MGP_AJ_T0041385.1 MGP_AJ_G0021949.1 mouse_genomes_project 15 73669628 73698950 + Mroh1 protein_coding processed_transcript MGP_AJ_T0041386.1 MGP_AJ_G0021949.1 mouse_genomes_project 15 73669638 73742047 + Mroh1 protein_coding retained_intron MGP_AJ_T0041387.1 MGP_AJ_G0021949.1 mouse_genomes_project 15 73669647 73691534 + MGP_AJ_P0041387 Mroh1 protein_coding protein_coding MGP_AJ_T0041388.1 MGP_AJ_G0021949.1 mouse_genomes_project 15 73669668 73698949 + MGP_AJ_P0041388 Mroh1 protein_coding protein_coding MGP_AJ_T0041389.1 MGP_AJ_G0021949.1 mouse_genomes_project 15 73679266 73742057 + MGP_AJ_P0041389 Mroh1 protein_coding protein_coding MGP_AJ_T0041390.1 MGP_AJ_G0021949.1 mouse_genomes_project 15 73679266 73728765 + MGP_AJ_P0041390 Mroh1 protein_coding protein_coding MGP_AJ_T0041391.1 MGP_AJ_G0021949.1 mouse_genomes_project 15 73716920 73742050 + Mroh1 protein_coding retained_intron MGP_AJ_T0041392.1 MGP_AJ_G0021949.1 mouse_genomes_project 15 73717677 73722930 + MGP_AJ_P0041392 Mroh1 protein_coding protein_coding MGP_AJ_T0041393.1 MGP_AJ_G0021949.1 mouse_genomes_project 15 73730065 73735853 + Mroh1 protein_coding retained_intron MGP_AJ_T0041394.1 MGP_AJ_G0021949.1 mouse_genomes_project 15 73738675 73740232 + Mroh1 protein_coding retained_intron MGP_AJ_T0041395.1 MGP_AJ_G0021949.1 mouse_genomes_project 15 73739639 73740397 + Mroh1 protein_coding retained_intron MGP_AJ_T0041396.1 MGP_AJ_G0021949.1 mouse_genomes_project 15 73740825 73741396 + Mroh1 protein_coding retained_intron MGP_AJ_T0041397.1 MGP_AJ_G0021949.1 mouse_genomes_project 15 73740873 73742050 + MGP_AJ_P0041397 Mroh1 protein_coding nonsense_mediated_decay MGP_AJ_T0041398.1 MGP_AJ_G0021949.1 mouse_genomes_project 15 73741150 73742050 + MGP_AJ_P0041398 Mroh1 protein_coding nonsense_mediated_decay MGP_AJ_T0041399.1 MGP_AJ_G0021949.1 mouse_genomes_project 15 73741165 73742049 + Mroh1 protein_coding retained_intron MGP_AJ_T0042403.1 MGP_AJ_G0022253.1 mouse_genomes_project 15 96153806 96154908 - MGP_AJ_P0042403 Olfr283 protein_coding protein_coding MGP_AJ_T0040729.1 MGP_AJ_G0021742.1 mouse_genomes_project 15 31545968 31558206 - MGP_AJ_P0040729 Rida protein_coding protein_coding MGP_AJ_T0040730.1 MGP_AJ_G0021742.1 mouse_genomes_project 15 31545971 31551794 - Rida protein_coding retained_intron MGP_AJ_T0040731.1 MGP_AJ_G0021742.1 mouse_genomes_project 15 31546841 31558122 - Rida protein_coding retained_intron MGP_AJ_T0040732.1 MGP_AJ_G0021742.1 mouse_genomes_project 15 31547551 31551680 - Rida protein_coding processed_transcript MGP_AJ_T0041537.1 MGP_AJ_G0021993.1 mouse_genomes_project 15 75371364 75388480 - MGP_AJ_P0041537 Foxred2 protein_coding protein_coding MGP_AJ_T0041538.1 MGP_AJ_G0021993.1 mouse_genomes_project 15 75371368 75376732 - Foxred2 protein_coding retained_intron MGP_AJ_T0041539.1 MGP_AJ_G0021993.1 mouse_genomes_project 15 75371862 75388433 - MGP_AJ_P0041539 Foxred2 protein_coding protein_coding MGP_AJ_T0041540.1 MGP_AJ_G0021993.1 mouse_genomes_project 15 75383584 75388441 - Foxred2 protein_coding retained_intron MGP_AJ_T0041821.1 MGP_AJ_G0022075.1 mouse_genomes_project 15 79048336 79048751 - MGP_AJ_P0041821 Gm5218 protein_coding protein_coding MGP_AJ_T0042308.1 MGP_AJ_G0022220.1 mouse_genomes_project 15 92312616 92324563 - MGP_AJ_P0042308 Twf1 protein_coding protein_coding MGP_AJ_T0042309.1 MGP_AJ_G0022220.1 mouse_genomes_project 15 92314329 92320141 - Twf1 protein_coding processed_transcript MGP_AJ_T0042310.1 MGP_AJ_G0022220.1 mouse_genomes_project 15 92315683 92316050 - Twf1 protein_coding retained_intron MGP_AJ_T0042311.1 MGP_AJ_G0022220.1 mouse_genomes_project 15 92319106 92324573 - MGP_AJ_P0042311 Twf1 protein_coding protein_coding MGP_AJ_T0041808.1 MGP_AJ_G0022071.1 mouse_genomes_project 15 78911421 78947972 - MGP_AJ_P0041808 St13 protein_coding protein_coding MGP_AJ_T0041809.1 MGP_AJ_G0022071.1 mouse_genomes_project 15 78913205 78947523 - MGP_AJ_P0041809 St13 protein_coding protein_coding MGP_AJ_T0041810.1 MGP_AJ_G0022071.1 mouse_genomes_project 15 78925517 78947312 - MGP_AJ_P0041810 St13 protein_coding protein_coding MGP_AJ_T0041811.1 MGP_AJ_G0022071.1 mouse_genomes_project 15 78937607 78948006 - MGP_AJ_P0041811 St13 protein_coding protein_coding MGP_AJ_T0041812.1 MGP_AJ_G0022071.1 mouse_genomes_project 15 78940221 78948002 - MGP_AJ_P0041812 St13 protein_coding protein_coding MGP_AJ_T0040991.1 MGP_AJ_G0021842.1 mouse_genomes_project 15 56257982 56272221 + Sqle protein_coding retained_intron MGP_AJ_T0040992.1 MGP_AJ_G0021842.1 mouse_genomes_project 15 56257986 56274523 + MGP_AJ_P0040992 Sqle protein_coding protein_coding MGP_AJ_T0040993.1 MGP_AJ_G0021842.1 mouse_genomes_project 15 56258012 56274523 + MGP_AJ_P0040993 Sqle protein_coding protein_coding MGP_AJ_T0040994.1 MGP_AJ_G0021842.1 mouse_genomes_project 15 56268770 56270462 + Sqle protein_coding retained_intron MGP_AJ_T0042562.1 MGP_AJ_G0022307.1 mouse_genomes_project 15 98135447 98147645 + MGP_AJ_P0042562 Tmprss12 protein_coding protein_coding MGP_AJ_T0013066.1 MGP_AJ_G0011161.1 mouse_genomes_project 15 15172283 15173396 + processed_pseudogene processed_pseudogene MGP_AJ_T0042332.1 MGP_AJ_G0022233.1 mouse_genomes_project 15 94985610 94988824 - MGP_AJ_P0042332 Amigo2 protein_coding protein_coding MGP_AJ_T0042180.1 MGP_AJ_G0022186.1 mouse_genomes_project 15 87078226 87082882 - MGP_AJ_P0042180 Lmf2 protein_coding protein_coding MGP_AJ_T0040824.1 MGP_AJ_G0021772.1 mouse_genomes_project 15 36042214 36058623 + MGP_AJ_P0040824 Cthrc1 protein_coding protein_coding MGP_AJ_T0040825.1 MGP_AJ_G0021772.1 mouse_genomes_project 15 36042363 36053205 + Cthrc1 protein_coding processed_transcript MGP_AJ_T0040826.1 MGP_AJ_G0021772.1 mouse_genomes_project 15 36055573 36058625 + Cthrc1 protein_coding retained_intron MGP_AJ_T0010092.1 MGP_AJ_G0008214.1 mouse_genomes_project 15 99157142 99157205 + Mir6962 miRNA miRNA MGP_AJ_T0040562.1 MGP_AJ_G0021681.1 mouse_genomes_project 15 7380139 7403402 - MGP_AJ_P0040562 Dnajc21 protein_coding protein_coding MGP_AJ_T0040563.1 MGP_AJ_G0021681.1 mouse_genomes_project 15 7380148 7394541 - MGP_AJ_P0040563 Dnajc21 protein_coding protein_coding MGP_AJ_T0040564.1 MGP_AJ_G0021681.1 mouse_genomes_project 15 7380149 7383388 - Dnajc21 protein_coding retained_intron MGP_AJ_T0040565.1 MGP_AJ_G0021681.1 mouse_genomes_project 15 7381081 7385314 - Dnajc21 protein_coding retained_intron MGP_AJ_T0040566.1 MGP_AJ_G0021681.1 mouse_genomes_project 15 7385985 7395062 - Dnajc21 protein_coding retained_intron MGP_AJ_T0041014.1 MGP_AJ_G0021852.1 mouse_genomes_project 15 60836870 60915384 - MGP_AJ_P0041014 protein_coding protein_coding MGP_AJ_T0041016.1 MGP_AJ_G0021852.1 mouse_genomes_project 15 60877267 60911056 - MGP_AJ_P0041016 protein_coding protein_coding MGP_AJ_T0041019.1 MGP_AJ_G0021852.1 mouse_genomes_project 15 60877721 60890744 - MGP_AJ_P0041019 protein_coding protein_coding MGP_AJ_T0042334.1 MGP_AJ_G0022235.1 mouse_genomes_project 15 95414118 95445434 - MGP_AJ_P0042334 Rpap3 protein_coding protein_coding MGP_AJ_T0006813.1 MGP_AJ_G0005610.1 mouse_genomes_project 15 96778103 96781432 + 4930578M01Rik lincRNA lincRNA MGP_AJ_T0013073.1 MGP_AJ_G0011168.1 mouse_genomes_project 15 34571180 34571653 + processed_pseudogene processed_pseudogene MGP_AJ_T0042675.1 MGP_AJ_G0022351.1 mouse_genomes_project 15 99839794 99847094 - MGP_AJ_P0042675 Krt2 protein_coding protein_coding MGP_AJ_T0040904.1 MGP_AJ_G0021806.1 mouse_genomes_project 15 51175609 51203457 - MGP_AJ_P0040904 Tnfrsf11b protein_coding protein_coding MGP_AJ_T0042218.1 MGP_AJ_G0022197.1 mouse_genomes_project 15 87203853 87208803 - MGP_AJ_P0042218 Arsa protein_coding protein_coding MGP_AJ_T0042219.1 MGP_AJ_G0022197.1 mouse_genomes_project 15 87203905 87207491 - Arsa protein_coding retained_intron MGP_AJ_T0042220.1 MGP_AJ_G0022197.1 mouse_genomes_project 15 87204617 87205649 - MGP_AJ_P0042220 Arsa protein_coding protein_coding MGP_AJ_T0042221.1 MGP_AJ_G0022197.1 mouse_genomes_project 15 87207608 87208789 - Arsa protein_coding processed_transcript MGP_AJ_T0040862.1 MGP_AJ_G0021791.1 mouse_genomes_project 15 41437700 41574117 + MGP_AJ_P0040862 Pkhd1l1 protein_coding protein_coding MGP_AJ_T0040863.1 MGP_AJ_G0021791.1 mouse_genomes_project 15 41437700 41574123 + MGP_AJ_P0040863 Pkhd1l1 protein_coding protein_coding MGP_AJ_T0041850.1 MGP_AJ_G0022081.1 mouse_genomes_project 15 79365589 79390014 + MGP_AJ_P0041850 Tef protein_coding protein_coding MGP_AJ_T0041851.1 MGP_AJ_G0022081.1 mouse_genomes_project 15 79365875 79369218 + Tef protein_coding processed_transcript MGP_AJ_T0041852.1 MGP_AJ_G0022081.1 mouse_genomes_project 15 79365898 79368523 + Tef protein_coding processed_transcript MGP_AJ_T0041853.1 MGP_AJ_G0022081.1 mouse_genomes_project 15 79365905 79380184 + Tef protein_coding retained_intron MGP_AJ_T0041854.1 MGP_AJ_G0022081.1 mouse_genomes_project 15 79365994 79369080 + Tef protein_coding processed_transcript MGP_AJ_T0041855.1 MGP_AJ_G0022081.1 mouse_genomes_project 15 79374214 79384406 + MGP_AJ_P0041855 Tef protein_coding protein_coding MGP_AJ_T0041856.1 MGP_AJ_G0022081.1 mouse_genomes_project 15 79374582 79389851 + MGP_AJ_P0041856 Tef protein_coding protein_coding MGP_AJ_T0041857.1 MGP_AJ_G0022081.1 mouse_genomes_project 15 79375331 79378381 + MGP_AJ_P0041857 Tef protein_coding protein_coding MGP_AJ_T0041858.1 MGP_AJ_G0022081.1 mouse_genomes_project 15 79383742 79384533 + Tef protein_coding processed_transcript MGP_AJ_T0041859.1 MGP_AJ_G0022081.1 mouse_genomes_project 15 79384092 79386932 + Tef protein_coding retained_intron MGP_AJ_T0042796.1 MGP_AJ_G0022386.1 mouse_genomes_project 15 100999797 101007603 + MGP_AJ_P0042796 Hoxc13 protein_coding protein_coding MGP_AJ_T0040630.1 MGP_AJ_G0021702.1 mouse_genomes_project 15 13797503 13876679 + MGP_AJ_P0040630 Cdh9 protein_coding protein_coding MGP_AJ_T0006791.1 MGP_AJ_G0005597.1 mouse_genomes_project 15 79363959 79365782 - Gm17597 lincRNA lincRNA MGP_AJ_T0041167.1 MGP_AJ_G0021891.1 mouse_genomes_project 15 71845094 71848530 + MGP_AJ_P0041167 Them6 protein_coding protein_coding MGP_AJ_T0041235.1 MGP_AJ_G0021913.1 mouse_genomes_project 15 72897984 72906606 + MGP_AJ_P0041235 Zfp41 protein_coding protein_coding MGP_AJ_T0041236.1 MGP_AJ_G0021913.1 mouse_genomes_project 15 72897989 72906599 + MGP_AJ_P0041236 Zfp41 protein_coding protein_coding MGP_AJ_T0041237.1 MGP_AJ_G0021913.1 mouse_genomes_project 15 72898031 72899950 + MGP_AJ_P0041237 Zfp41 protein_coding protein_coding MGP_AJ_T0041238.1 MGP_AJ_G0021913.1 mouse_genomes_project 15 72903016 72905136 + Zfp41 protein_coding processed_transcript MGP_AJ_T0041546.1 MGP_AJ_G0021998.1 mouse_genomes_project 15 75677435 75696374 + MGP_AJ_P0041546 Ncf4 protein_coding protein_coding MGP_AJ_T0041547.1 MGP_AJ_G0021998.1 mouse_genomes_project 15 75677478 75694782 + MGP_AJ_P0041547 Ncf4 protein_coding protein_coding MGP_AJ_T0041548.1 MGP_AJ_G0021998.1 mouse_genomes_project 15 75685654 75688653 + Ncf4 protein_coding retained_intron MGP_AJ_T0041549.1 MGP_AJ_G0021998.1 mouse_genomes_project 15 75685868 75694557 + Ncf4 protein_coding processed_transcript MGP_AJ_T0041550.1 MGP_AJ_G0021998.1 mouse_genomes_project 15 75688074 75694590 + Ncf4 protein_coding retained_intron MGP_AJ_T0041551.1 MGP_AJ_G0021998.1 mouse_genomes_project 15 75694665 75696369 + Ncf4 protein_coding retained_intron MGP_AJ_T0040788.1 MGP_AJ_G0021762.1 mouse_genomes_project 15 34448495 34874337 - MGP_AJ_P0040788 Ncald protein_coding protein_coding MGP_AJ_T0040789.1 MGP_AJ_G0021762.1 mouse_genomes_project 15 34448495 34874770 - MGP_AJ_P0040789 Ncald protein_coding protein_coding MGP_AJ_T0040790.1 MGP_AJ_G0021762.1 mouse_genomes_project 15 34448538 34544146 - MGP_AJ_P0040790 Ncald protein_coding protein_coding MGP_AJ_T0040791.1 MGP_AJ_G0021762.1 mouse_genomes_project 15 34448587 34544135 - MGP_AJ_P0040791 Ncald protein_coding protein_coding MGP_AJ_T0040792.1 MGP_AJ_G0021762.1 mouse_genomes_project 15 34450944 34543327 - MGP_AJ_P0040792 Ncald protein_coding protein_coding MGP_AJ_T0040793.1 MGP_AJ_G0021762.1 mouse_genomes_project 15 34451208 34813224 - MGP_AJ_P0040793 Ncald protein_coding protein_coding MGP_AJ_T0040794.1 MGP_AJ_G0021762.1 mouse_genomes_project 15 34454431 34874337 - MGP_AJ_P0040794 Ncald protein_coding protein_coding MGP_AJ_T0040795.1 MGP_AJ_G0021762.1 mouse_genomes_project 15 34463909 34544118 - Ncald protein_coding processed_transcript MGP_AJ_T0040796.1 MGP_AJ_G0021762.1 mouse_genomes_project 15 34481308 34874907 - MGP_AJ_P0040796 Ncald protein_coding protein_coding MGP_AJ_T0040798.1 MGP_AJ_G0021762.1 mouse_genomes_project 15 34517224 34812925 - Ncald protein_coding processed_transcript MGP_AJ_T0040799.1 MGP_AJ_G0021762.1 mouse_genomes_project 15 34699586 34813224 - Ncald protein_coding processed_transcript MGP_AJ_T0040800.1 MGP_AJ_G0021762.1 mouse_genomes_project 15 34700953 34874576 - Ncald protein_coding processed_transcript MGP_AJ_T0040868.1 MGP_AJ_G0021794.1 mouse_genomes_project 15 42071829 42080473 - MGP_AJ_P0040868 Kcnv1 protein_coding protein_coding MGP_AJ_T0040515.1 MGP_AJ_G0021670.1 mouse_genomes_project 15 5983862 6027548 + Nadk2 protein_coding processed_transcript MGP_AJ_T0040516.1 MGP_AJ_G0021670.1 mouse_genomes_project 15 5983862 6027548 + MGP_AJ_P0040516 Nadk2 protein_coding protein_coding MGP_AJ_T0040517.1 MGP_AJ_G0021670.1 mouse_genomes_project 15 5983862 6027548 + MGP_AJ_P0040517 Nadk2 protein_coding protein_coding MGP_AJ_T0040518.1 MGP_AJ_G0021670.1 mouse_genomes_project 15 5984103 6024377 + MGP_AJ_P0040518 Nadk2 protein_coding unknown_likely_coding MGP_AJ_T0040519.1 MGP_AJ_G0021670.1 mouse_genomes_project 15 5984282 6026913 + Nadk2 protein_coding processed_transcript MGP_AJ_T0040520.1 MGP_AJ_G0021670.1 mouse_genomes_project 15 5984288 6023197 + Nadk2 protein_coding processed_transcript MGP_AJ_T0040521.1 MGP_AJ_G0021670.1 mouse_genomes_project 15 5999608 6022862 + Nadk2 protein_coding processed_transcript MGP_AJ_T0040522.1 MGP_AJ_G0021670.1 mouse_genomes_project 15 6015973 6023203 + MGP_AJ_P0040522 Nadk2 protein_coding protein_coding MGP_AJ_T0040523.1 MGP_AJ_G0021670.1 mouse_genomes_project 15 6018801 6022795 + Nadk2 protein_coding retained_intron MGP_AJ_T0040586.1 MGP_AJ_G0021689.1 mouse_genomes_project 15 7961273 7965552 - MGP_AJ_P0040586 Rxfp3 protein_coding protein_coding MGP_AJ_T0010044.1 MGP_AJ_G0008166.1 mouse_genomes_project 15 47820276 47820366 - Mir1907 miRNA miRNA MGP_AJ_T0040445.1 MGP_AJ_G0021654.1 mouse_genomes_project 15 2102936 2134689 + MGP_AJ_P0040445 Ttc33 protein_coding protein_coding MGP_AJ_T0040446.1 MGP_AJ_G0021654.1 mouse_genomes_project 15 2103369 2134390 + MGP_AJ_P0040446 Ttc33 protein_coding protein_coding MGP_AJ_T0040447.1 MGP_AJ_G0021654.1 mouse_genomes_project 15 2104559 2129249 + MGP_AJ_P0040447 Ttc33 protein_coding protein_coding MGP_AJ_T0041612.1 MGP_AJ_G0022021.1 mouse_genomes_project 15 76541571 76543858 + MGP_AJ_P0041612 H1f0 protein_coding protein_coding MGP_AJ_T0013069.1 MGP_AJ_G0011164.1 mouse_genomes_project 15 33201814 33202743 - processed_pseudogene processed_pseudogene MGP_AJ_T0041788.1 MGP_AJ_G0022067.1 mouse_genomes_project 15 78549327 78558437 + MGP_AJ_P0041788 Sgsm3 protein_coding protein_coding MGP_AJ_T0042470.1 MGP_AJ_G0022280.1 mouse_genomes_project 15 96885736 96888865 - MGP_AJ_P0042470 C1ql4 protein_coding protein_coding MGP_AJ_T0040432.1 MGP_AJ_G0021647.1 mouse_genomes_project 15 1627744 1700226 + MGP_AJ_P0040432 C6 protein_coding protein_coding MGP_AJ_T0040433.1 MGP_AJ_G0021647.1 mouse_genomes_project 15 1627785 1659674 + MGP_AJ_P0040433 C6 protein_coding protein_coding MGP_AJ_T0040434.1 MGP_AJ_G0021647.1 mouse_genomes_project 15 1627785 1699823 + MGP_AJ_P0040434 C6 protein_coding protein_coding MGP_AJ_T0040435.1 MGP_AJ_G0021647.1 mouse_genomes_project 15 1627853 1712167 + MGP_AJ_P0040435 C6 protein_coding protein_coding MGP_AJ_T0040436.1 MGP_AJ_G0021647.1 mouse_genomes_project 15 1638789 1688023 + MGP_AJ_P0040436 C6 protein_coding unknown_likely_coding MGP_AJ_T0040437.1 MGP_AJ_G0021647.1 mouse_genomes_project 15 1666003 1687742 + C6 protein_coding processed_transcript MGP_AJ_T0040663.1 MGP_AJ_G0021712.1 mouse_genomes_project 15 23092230 23106347 + MGP_AJ_P0040663 Zfp622 protein_coding protein_coding MGP_AJ_T0099558.1 MGP_AJ_G0037524.1 mouse_genomes_project 15 62706318 62706507 + Gm23907 snRNA snRNA MGP_AJ_T0042832.1 MGP_AJ_G0022403.1 mouse_genomes_project 15 101490997 101509423 - MGP_AJ_P0042832 Gtsf1 protein_coding protein_coding MGP_AJ_T0042833.1 MGP_AJ_G0022403.1 mouse_genomes_project 15 101491048 101507559 - MGP_AJ_P0042833 Gtsf1 protein_coding protein_coding MGP_AJ_T0042834.1 MGP_AJ_G0022403.1 mouse_genomes_project 15 101491048 101507453 - MGP_AJ_P0042834 Gtsf1 protein_coding protein_coding MGP_AJ_T0042835.1 MGP_AJ_G0022403.1 mouse_genomes_project 15 101491051 101508515 - MGP_AJ_P0042835 Gtsf1 protein_coding protein_coding MGP_AJ_T0042836.1 MGP_AJ_G0022403.1 mouse_genomes_project 15 101491073 101509302 - MGP_AJ_P0042836 Gtsf1 protein_coding protein_coding MGP_AJ_T0042837.1 MGP_AJ_G0022403.1 mouse_genomes_project 15 101491085 101509297 - MGP_AJ_P0042837 Gtsf1 protein_coding protein_coding MGP_AJ_T0042838.1 MGP_AJ_G0022403.1 mouse_genomes_project 15 101491104 101509332 - MGP_AJ_P0042838 Gtsf1 protein_coding protein_coding MGP_AJ_T0042839.1 MGP_AJ_G0022403.1 mouse_genomes_project 15 101496546 101509362 - MGP_AJ_P0042839 Gtsf1 protein_coding protein_coding MGP_AJ_T0042840.1 MGP_AJ_G0022403.1 mouse_genomes_project 15 101498947 101509197 - MGP_AJ_P0042840 Gtsf1 protein_coding protein_coding MGP_AJ_T0006802.1 MGP_AJ_G0005604.1 mouse_genomes_project 15 89314880 89325003 + 4933438A12Rik lincRNA lincRNA MGP_AJ_T0042805.1 MGP_AJ_G0022393.1 mouse_genomes_project 15 101077355 101089866 + Hoxc6 protein_coding processed_transcript MGP_AJ_T0042806.1 MGP_AJ_G0022393.1 mouse_genomes_project 15 101079626 101089104 + Hoxc6 protein_coding processed_transcript MGP_AJ_T0042807.1 MGP_AJ_G0022393.1 mouse_genomes_project 15 101088670 101090979 + MGP_AJ_P0042807 Hoxc6 protein_coding protein_coding MGP_AJ_T0041416.1 MGP_AJ_G0021957.1 mouse_genomes_project 15 73859334 73878543 + MGP_AJ_P0041416 Adck5 protein_coding nonsense_mediated_decay MGP_AJ_T0041417.1 MGP_AJ_G0021957.1 mouse_genomes_project 15 73859354 73878551 + Adck5 protein_coding retained_intron MGP_AJ_T0041418.1 MGP_AJ_G0021957.1 mouse_genomes_project 15 73859380 73874558 + Adck5 protein_coding processed_transcript MGP_AJ_T0041419.1 MGP_AJ_G0021957.1 mouse_genomes_project 15 73859387 73878544 + Adck5 protein_coding retained_intron MGP_AJ_T0041420.1 MGP_AJ_G0021957.1 mouse_genomes_project 15 73859388 73872460 + Adck5 protein_coding processed_transcript MGP_AJ_T0041421.1 MGP_AJ_G0021957.1 mouse_genomes_project 15 73859449 73878385 + MGP_AJ_P0041421 Adck5 protein_coding nonsense_mediated_decay MGP_AJ_T0041422.1 MGP_AJ_G0021957.1 mouse_genomes_project 15 73859458 73878528 + MGP_AJ_P0041422 Adck5 protein_coding protein_coding MGP_AJ_T0041423.1 MGP_AJ_G0021957.1 mouse_genomes_project 15 73876172 73876905 + Adck5 protein_coding retained_intron MGP_AJ_T0041424.1 MGP_AJ_G0021957.1 mouse_genomes_project 15 73876635 73877891 + Adck5 protein_coding retained_intron MGP_AJ_T0041425.1 MGP_AJ_G0021957.1 mouse_genomes_project 15 73876902 73877923 + Adck5 protein_coding retained_intron MGP_AJ_T0041426.1 MGP_AJ_G0021957.1 mouse_genomes_project 15 73877027 73878551 + Adck5 protein_coding retained_intron MGP_AJ_T0041427.1 MGP_AJ_G0021957.1 mouse_genomes_project 15 73877556 73877898 + Adck5 protein_coding retained_intron MGP_AJ_T0041428.1 MGP_AJ_G0021957.1 mouse_genomes_project 15 73877698 73878451 + Adck5 protein_coding retained_intron MGP_AJ_T0042401.1 MGP_AJ_G0022252.1 mouse_genomes_project 15 96119048 96119966 - MGP_AJ_P0042401 Olfr284 protein_coding protein_coding MGP_AJ_T0042402.1 MGP_AJ_G0022252.1 mouse_genomes_project 15 96119048 96120014 - MGP_AJ_P0042402 Olfr284 protein_coding protein_coding MGP_AJ_T0099566.1 MGP_AJ_G0037532.1 mouse_genomes_project 15 74528425 74528571 - Gm24056 snRNA snRNA MGP_AJ_T0100841.1 MGP_AJ_G0038807.1 mouse_genomes_project 15 57644749 57644881 - Gm23835 snoRNA snoRNA MGP_AJ_T0003633.1 MGP_AJ_G0003286.1 mouse_genomes_project 15 97594114 97612309 + Gm17058 antisense antisense MGP_AJ_T0011383.1 MGP_AJ_G0009505.1 mouse_genomes_project 15 14945414 14945722 + Gm22895 misc_RNA misc_RNA MGP_AJ_T0000941.1 MGP_AJ_G0000875.1 mouse_genomes_project 15 79136269 79137124 - TEC TEC MGP_AJ_T0010086.1 MGP_AJ_G0008208.1 mouse_genomes_project 15 87030527 87030602 - Mir6959 miRNA miRNA MGP_AJ_T0041639.1 MGP_AJ_G0022028.1 mouse_genomes_project 15 76670273 76679879 - MGP_AJ_P0041639 Sox10 protein_coding protein_coding MGP_AJ_T0042053.1 MGP_AJ_G0022151.1 mouse_genomes_project 15 83154010 83165330 - MGP_AJ_P0042053 7530416G11Rik protein_coding protein_coding MGP_AJ_T0041290.1 MGP_AJ_G0021931.1 mouse_genomes_project 15 73331159 73353756 - MGP_AJ_P0041290 Scrib protein_coding protein_coding MGP_AJ_T0041291.1 MGP_AJ_G0021931.1 mouse_genomes_project 15 73331159 73346721 - MGP_AJ_P0041291 Scrib protein_coding protein_coding MGP_AJ_T0041292.1 MGP_AJ_G0021931.1 mouse_genomes_project 15 73331159 73353756 - MGP_AJ_P0041292 Scrib protein_coding protein_coding MGP_AJ_T0041293.1 MGP_AJ_G0021931.1 mouse_genomes_project 15 73331159 73353786 - MGP_AJ_P0041293 Scrib protein_coding protein_coding MGP_AJ_T0041294.1 MGP_AJ_G0021931.1 mouse_genomes_project 15 73332941 73334788 - MGP_AJ_P0041294 Scrib protein_coding protein_coding MGP_AJ_T0041295.1 MGP_AJ_G0021931.1 mouse_genomes_project 15 73333204 73334788 - MGP_AJ_P0041295 Scrib protein_coding protein_coding MGP_AJ_T0042247.1 MGP_AJ_G0022204.1 mouse_genomes_project 15 88668673 88784378 - MGP_AJ_P0042247 Kif21a protein_coding protein_coding MGP_AJ_T0042248.1 MGP_AJ_G0022204.1 mouse_genomes_project 15 88668673 88784378 - MGP_AJ_P0042248 Kif21a protein_coding protein_coding MGP_AJ_T0042249.1 MGP_AJ_G0022204.1 mouse_genomes_project 15 88668673 88784378 - MGP_AJ_P0042249 Kif21a protein_coding protein_coding MGP_AJ_T0042250.1 MGP_AJ_G0022204.1 mouse_genomes_project 15 88668673 88784378 - MGP_AJ_P0042250 Kif21a protein_coding protein_coding MGP_AJ_T0042251.1 MGP_AJ_G0022204.1 mouse_genomes_project 15 88668673 88784378 - MGP_AJ_P0042251 Kif21a protein_coding protein_coding MGP_AJ_T0017479.1 MGP_AJ_G0015284.1 mouse_genomes_project 15 89609728 89634758 + processed_transcript processed_transcript MGP_AJ_T0017480.1 MGP_AJ_G0015284.1 mouse_genomes_project 15 89617006 89646859 + processed_transcript processed_transcript MGP_AJ_T0010054.1 MGP_AJ_G0008176.1 mouse_genomes_project 15 73534755 73534823 + Mir6953 miRNA miRNA MGP_AJ_T0040438.1 MGP_AJ_G0021648.1 mouse_genomes_project 15 1800867 1862871 + MGP_AJ_P0040438 Mroh2b protein_coding protein_coding MGP_AJ_T0042448.1 MGP_AJ_G0022270.1 mouse_genomes_project 15 96592250 96596393 - MGP_AJ_P0042448 Ddn protein_coding protein_coding MGP_AJ_T0099541.1 MGP_AJ_G0037507.1 mouse_genomes_project 15 33284898 33284961 + Gm23754 snRNA snRNA MGP_AJ_T0041041.1 MGP_AJ_G0021857.1 mouse_genomes_project 15 61835451 61966757 + MGP_AJ_P0041041 Gm21798 protein_coding protein_coding MGP_AJ_T0041011.1 MGP_AJ_G0021850.1 mouse_genomes_project 15 60735524 60767479 - MGP_AJ_P0041011 Gsdmc protein_coding protein_coding MGP_AJ_T0013087.1 MGP_AJ_G0011182.1 mouse_genomes_project 15 59933498 59934668 + processed_pseudogene processed_pseudogene MGP_AJ_T0102102.1 MGP_AJ_G0039870.1 mouse_genomes_project 15 72923434 72928749 + unitary_pseudogene processed_transcript MGP_AJ_T0102103.1 MGP_AJ_G0039870.1 mouse_genomes_project 15 72923780 72925785 + unitary_pseudogene processed_transcript MGP_AJ_T0102104.1 MGP_AJ_G0039870.1 mouse_genomes_project 15 72923789 72934963 + unitary_pseudogene processed_transcript MGP_AJ_T0102105.1 MGP_AJ_G0039870.1 mouse_genomes_project 15 72924791 72928279 + unitary_pseudogene unitary_pseudogene MGP_AJ_T0102106.1 MGP_AJ_G0039870.1 mouse_genomes_project 15 72925804 72928044 + unitary_pseudogene retained_intron MGP_AJ_T0102107.1 MGP_AJ_G0039870.1 mouse_genomes_project 15 72925968 72927797 + unitary_pseudogene processed_transcript MGP_AJ_T0041440.1 MGP_AJ_G0021961.1 mouse_genomes_project 15 73930808 73947468 - MGP_AJ_P0041440 Cyhr1 protein_coding protein_coding MGP_AJ_T0041441.1 MGP_AJ_G0021961.1 mouse_genomes_project 15 73934338 73944333 - MGP_AJ_P0041441 Cyhr1 protein_coding protein_coding MGP_AJ_T0041442.1 MGP_AJ_G0021961.1 mouse_genomes_project 15 73945552 73947524 - MGP_AJ_P0041442 Cyhr1 protein_coding protein_coding MGP_AJ_T0041443.1 MGP_AJ_G0021961.1 mouse_genomes_project 15 73945556 73947515 - MGP_AJ_P0041443 Cyhr1 protein_coding protein_coding MGP_AJ_T0010056.1 MGP_AJ_G0008178.1 mouse_genomes_project 15 73722234 73722294 + Mir6954 miRNA miRNA MGP_AJ_T0100855.1 MGP_AJ_G0038821.1 mouse_genomes_project 15 96296521 96296659 - Snora34 snoRNA snoRNA MGP_AJ_T0040814.1 MGP_AJ_G0021768.1 mouse_genomes_project 15 35575909 35607653 - MGP_AJ_P0040814 Azin1 protein_coding nonsense_mediated_decay MGP_AJ_T0040815.1 MGP_AJ_G0021768.1 mouse_genomes_project 15 35578029 35607795 - MGP_AJ_P0040815 Azin1 protein_coding protein_coding MGP_AJ_T0040816.1 MGP_AJ_G0021768.1 mouse_genomes_project 15 35580360 35585061 - Azin1 protein_coding retained_intron MGP_AJ_T0040817.1 MGP_AJ_G0021768.1 mouse_genomes_project 15 35586854 35606646 - MGP_AJ_P0040817 Azin1 protein_coding protein_coding MGP_AJ_T0040818.1 MGP_AJ_G0021768.1 mouse_genomes_project 15 35588623 35606705 - MGP_AJ_P0040818 Azin1 protein_coding protein_coding MGP_AJ_T0040819.1 MGP_AJ_G0021768.1 mouse_genomes_project 15 35602956 35607734 - Azin1 protein_coding processed_transcript MGP_AJ_T0013074.1 MGP_AJ_G0011169.1 mouse_genomes_project 15 34947340 34947743 + processed_pseudogene processed_pseudogene MGP_AJ_T0040995.1 MGP_AJ_G0021843.1 mouse_genomes_project 15 56275438 56318124 - MGP_AJ_P0040995 E430025E21Rik protein_coding protein_coding MGP_AJ_T0042008.1 MGP_AJ_G0022132.1 mouse_genomes_project 15 81745362 81756569 - MGP_AJ_P0042008 Pnpla5 protein_coding protein_coding MGP_AJ_T0042044.1 MGP_AJ_G0022145.1 mouse_genomes_project 15 82669469 82674889 + MGP_AJ_P0042044 Upk3a protein_coding protein_coding MGP_AJ_T0042442.1 MGP_AJ_G0022267.1 mouse_genomes_project 15 96525699 96551154 - MGP_AJ_P0042442 Arf3 protein_coding protein_coding MGP_AJ_T0042443.1 MGP_AJ_G0022267.1 mouse_genomes_project 15 96529052 96551157 - Arf3 protein_coding processed_transcript MGP_AJ_T0042444.1 MGP_AJ_G0022267.1 mouse_genomes_project 15 96530587 96550935 - MGP_AJ_P0042444 Arf3 protein_coding protein_coding MGP_AJ_T0042320.1 MGP_AJ_G0022227.1 mouse_genomes_project 15 94034527 94100479 + MGP_AJ_P0042320 Arid2 protein_coding protein_coding MGP_AJ_T0042321.1 MGP_AJ_G0022227.1 mouse_genomes_project 15 94034582 94153800 + MGP_AJ_P0042321 Arid2 protein_coding protein_coding MGP_AJ_T0042322.1 MGP_AJ_G0022227.1 mouse_genomes_project 15 94105280 94108255 + Arid2 protein_coding retained_intron MGP_AJ_T0042323.1 MGP_AJ_G0022227.1 mouse_genomes_project 15 94121247 94152409 + Arid2 protein_coding retained_intron MGP_AJ_T0006817.1 MGP_AJ_G0005614.1 mouse_genomes_project 15 99257168 99260572 + 6030408B16Rik lincRNA lincRNA MGP_AJ_T0006818.1 MGP_AJ_G0005614.1 mouse_genomes_project 15 99257188 99261377 + 6030408B16Rik lincRNA lincRNA MGP_AJ_T0099556.1 MGP_AJ_G0037522.1 mouse_genomes_project 15 60433663 60433726 - Gm25702 snRNA snRNA MGP_AJ_T0013084.1 MGP_AJ_G0011179.1 mouse_genomes_project 15 56932031 56932481 + processed_pseudogene processed_pseudogene MGP_AJ_T0013111.1 MGP_AJ_G0011206.1 mouse_genomes_project 15 97367493 97367850 - processed_pseudogene processed_pseudogene MGP_AJ_T0040842.1 MGP_AJ_G0021779.1 mouse_genomes_project 15 37086588 37093080 + MGP_AJ_P0040842 9330182O14Rik protein_coding protein_coding MGP_AJ_T0040851.1 MGP_AJ_G0021783.1 mouse_genomes_project 15 39426873 39672287 - MGP_AJ_P0040851 Angpt1 protein_coding protein_coding MGP_AJ_T0040852.1 MGP_AJ_G0021783.1 mouse_genomes_project 15 39429116 39671771 - MGP_AJ_P0040852 Angpt1 protein_coding unknown_likely_coding MGP_AJ_T0041250.1 MGP_AJ_G0021921.1 mouse_genomes_project 15 73176728 73191288 - MGP_AJ_P0041250 Eef1d protein_coding protein_coding MGP_AJ_T0041251.1 MGP_AJ_G0021921.1 mouse_genomes_project 15 73176732 73191267 - MGP_AJ_P0041251 Eef1d protein_coding protein_coding MGP_AJ_T0041252.1 MGP_AJ_G0021921.1 mouse_genomes_project 15 73176732 73191273 - MGP_AJ_P0041252 Eef1d protein_coding protein_coding MGP_AJ_T0041253.1 MGP_AJ_G0021921.1 mouse_genomes_project 15 73177420 73185489 - MGP_AJ_P0041253 Eef1d protein_coding protein_coding MGP_AJ_T0041254.1 MGP_AJ_G0021921.1 mouse_genomes_project 15 73177420 73191239 - MGP_AJ_P0041254 Eef1d protein_coding protein_coding MGP_AJ_T0041255.1 MGP_AJ_G0021921.1 mouse_genomes_project 15 73177420 73191230 - MGP_AJ_P0041255 Eef1d protein_coding protein_coding MGP_AJ_T0041256.1 MGP_AJ_G0021921.1 mouse_genomes_project 15 73177422 73191268 - MGP_AJ_P0041256 Eef1d protein_coding protein_coding MGP_AJ_T0041257.1 MGP_AJ_G0021921.1 mouse_genomes_project 15 73177422 73191252 - MGP_AJ_P0041257 Eef1d protein_coding protein_coding MGP_AJ_T0041258.1 MGP_AJ_G0021921.1 mouse_genomes_project 15 73177424 73178673 - Eef1d protein_coding retained_intron MGP_AJ_T0041259.1 MGP_AJ_G0021921.1 mouse_genomes_project 15 73177736 73191262 - MGP_AJ_P0041259 Eef1d protein_coding protein_coding MGP_AJ_T0041260.1 MGP_AJ_G0021921.1 mouse_genomes_project 15 73178206 73191489 - MGP_AJ_P0041260 Eef1d protein_coding protein_coding MGP_AJ_T0041261.1 MGP_AJ_G0021921.1 mouse_genomes_project 15 73178213 73191252 - MGP_AJ_P0041261 Eef1d protein_coding protein_coding MGP_AJ_T0041262.1 MGP_AJ_G0021921.1 mouse_genomes_project 15 73178326 73191480 - MGP_AJ_P0041262 Eef1d protein_coding protein_coding MGP_AJ_T0041263.1 MGP_AJ_G0021921.1 mouse_genomes_project 15 73178608 73183188 - Eef1d protein_coding retained_intron MGP_AJ_T0041264.1 MGP_AJ_G0021921.1 mouse_genomes_project 15 73180038 73191252 - Eef1d protein_coding retained_intron MGP_AJ_T0041265.1 MGP_AJ_G0021921.1 mouse_genomes_project 15 73185055 73191480 - MGP_AJ_P0041265 Eef1d protein_coding protein_coding MGP_AJ_T0041266.1 MGP_AJ_G0021921.1 mouse_genomes_project 15 73185194 73187296 - MGP_AJ_P0041266 Eef1d protein_coding protein_coding MGP_AJ_T0041267.1 MGP_AJ_G0021921.1 mouse_genomes_project 15 73185438 73191224 - MGP_AJ_P0041267 Eef1d protein_coding protein_coding MGP_AJ_T0041204.1 MGP_AJ_G0021904.1 mouse_genomes_project 15 72368051 72370137 + MGP_AJ_P0041204 Ly6g protein_coding protein_coding MGP_AJ_T0041205.1 MGP_AJ_G0021904.1 mouse_genomes_project 15 72368051 72370478 + MGP_AJ_P0041205 Ly6g protein_coding protein_coding MGP_AJ_T0042543.1 MGP_AJ_G0022302.1 mouse_genomes_project 15 97606532 97708355 - MGP_AJ_P0042543 Lima1 protein_coding protein_coding MGP_AJ_T0042544.1 MGP_AJ_G0022302.1 mouse_genomes_project 15 97609309 97615007 - Lima1 protein_coding retained_intron MGP_AJ_T0042545.1 MGP_AJ_G0022302.1 mouse_genomes_project 15 97674427 97708331 - Lima1 protein_coding retained_intron MGP_AJ_T0042678.1 MGP_AJ_G0022354.1 mouse_genomes_project 15 99923853 99932432 - MGP_AJ_P0042678 Krt76 protein_coding protein_coding MGP_AJ_T0100827.1 MGP_AJ_G0038793.1 mouse_genomes_project 15 31182519 31182643 - Gm24500 snoRNA snoRNA MGP_AJ_T0100857.1 MGP_AJ_G0038823.1 mouse_genomes_project 15 96935260 96935366 - Gm25183 snoRNA snoRNA MGP_AJ_T0017462.1 MGP_AJ_G0015274.1 mouse_genomes_project 15 65340899 65343615 - Gm26621 processed_transcript TEC MGP_AJ_T0017463.1 MGP_AJ_G0015274.1 mouse_genomes_project 15 65341320 65343595 - Gm26621 processed_transcript processed_transcript MGP_AJ_T0041404.1 MGP_AJ_G0021953.1 mouse_genomes_project 15 73791474 73801384 - MGP_AJ_P0041404 Dgat1 protein_coding protein_coding MGP_AJ_T0041405.1 MGP_AJ_G0021953.1 mouse_genomes_project 15 73791476 73792640 - Dgat1 protein_coding retained_intron MGP_AJ_T0041406.1 MGP_AJ_G0021953.1 mouse_genomes_project 15 73791527 73792774 - Dgat1 protein_coding retained_intron MGP_AJ_T0041407.1 MGP_AJ_G0021953.1 mouse_genomes_project 15 73791983 73793405 - MGP_AJ_P0041407 Dgat1 protein_coding nonsense_mediated_decay MGP_AJ_T0041408.1 MGP_AJ_G0021953.1 mouse_genomes_project 15 73792735 73796065 - MGP_AJ_P0041408 Dgat1 protein_coding protein_coding MGP_AJ_T0041409.1 MGP_AJ_G0021953.1 mouse_genomes_project 15 73793050 73793782 - Dgat1 protein_coding retained_intron MGP_AJ_T0041410.1 MGP_AJ_G0021953.1 mouse_genomes_project 15 73793361 73794655 - Dgat1 protein_coding retained_intron MGP_AJ_T0041411.1 MGP_AJ_G0021953.1 mouse_genomes_project 15 73793411 73794123 - Dgat1 protein_coding retained_intron MGP_AJ_T0042728.1 MGP_AJ_G0022372.1 mouse_genomes_project 15 100398362 100410967 - MGP_AJ_P0042728 Aaas protein_coding protein_coding MGP_AJ_T0041230.1 MGP_AJ_G0021912.1 mouse_genomes_project 15 72873563 72878881 + MGP_AJ_P0041230 protein_coding unknown_likely_coding MGP_AJ_T0041231.1 MGP_AJ_G0021912.1 mouse_genomes_project 15 72877384 72878970 + MGP_AJ_P0041231 protein_coding protein_coding MGP_AJ_T0041232.1 MGP_AJ_G0021912.1 mouse_genomes_project 15 72877410 72880238 + MGP_AJ_P0041232 protein_coding protein_coding MGP_AJ_T0041233.1 MGP_AJ_G0021912.1 mouse_genomes_project 15 72877424 72878945 + protein_coding retained_intron MGP_AJ_T0041234.1 MGP_AJ_G0021912.1 mouse_genomes_project 15 72877424 72878701 + protein_coding retained_intron MGP_AJ_T0041176.1 MGP_AJ_G0021896.1 mouse_genomes_project 15 71890560 71892125 - MGP_AJ_P0041176 Ly6d protein_coding protein_coding MGP_AJ_T0040908.1 MGP_AJ_G0021810.1 mouse_genomes_project 15 51759372 51841777 - MGP_AJ_P0040908 Enpp2 protein_coding protein_coding MGP_AJ_T0040909.1 MGP_AJ_G0021810.1 mouse_genomes_project 15 51759375 51841633 - MGP_AJ_P0040909 Enpp2 protein_coding protein_coding MGP_AJ_T0040910.1 MGP_AJ_G0021810.1 mouse_genomes_project 15 51759376 51841592 - MGP_AJ_P0040910 Enpp2 protein_coding unknown_likely_coding MGP_AJ_T0040911.1 MGP_AJ_G0021810.1 mouse_genomes_project 15 51759745 51841649 - MGP_AJ_P0040911 Enpp2 protein_coding protein_coding MGP_AJ_T0040912.1 MGP_AJ_G0021810.1 mouse_genomes_project 15 51759842 51841592 - MGP_AJ_P0040912 Enpp2 protein_coding protein_coding MGP_AJ_T0042579.1 MGP_AJ_G0022314.1 mouse_genomes_project 15 98394129 98404348 + MGP_AJ_P0042579 Letmd1 protein_coding protein_coding MGP_AJ_T0042216.1 MGP_AJ_G0022196.1 mouse_genomes_project 15 87185872 87196278 + MGP_AJ_P0042216 Mapk8ip2 protein_coding protein_coding MGP_AJ_T0042217.1 MGP_AJ_G0022196.1 mouse_genomes_project 15 87186837 87188448 + MGP_AJ_P0042217 Mapk8ip2 protein_coding protein_coding MGP_AJ_T0042694.1 MGP_AJ_G0022365.1 mouse_genomes_project 15 100263314 100275034 + MGP_AJ_P0042694 Zfp740 protein_coding protein_coding MGP_AJ_T0042695.1 MGP_AJ_G0022365.1 mouse_genomes_project 15 100263325 100275027 + MGP_AJ_P0042695 Zfp740 protein_coding protein_coding MGP_AJ_T0042696.1 MGP_AJ_G0022365.1 mouse_genomes_project 15 100263357 100267985 + MGP_AJ_P0042696 Zfp740 protein_coding protein_coding MGP_AJ_T0042697.1 MGP_AJ_G0022365.1 mouse_genomes_project 15 100263375 100268507 + MGP_AJ_P0042697 Zfp740 protein_coding protein_coding MGP_AJ_T0042698.1 MGP_AJ_G0022365.1 mouse_genomes_project 15 100264275 100275035 + MGP_AJ_P0042698 Zfp740 protein_coding protein_coding MGP_AJ_T0042699.1 MGP_AJ_G0022365.1 mouse_genomes_project 15 100264412 100268421 + MGP_AJ_P0042699 Zfp740 protein_coding protein_coding MGP_AJ_T0042700.1 MGP_AJ_G0022365.1 mouse_genomes_project 15 100264446 100268409 + MGP_AJ_P0042700 Zfp740 protein_coding protein_coding MGP_AJ_T0042701.1 MGP_AJ_G0022365.1 mouse_genomes_project 15 100267260 100268291 + Zfp740 protein_coding retained_intron MGP_AJ_T0042702.1 MGP_AJ_G0022365.1 mouse_genomes_project 15 100267904 100275030 + Zfp740 protein_coding retained_intron MGP_AJ_T0042282.1 MGP_AJ_G0022214.1 mouse_genomes_project 15 91135683 91147874 - MGP_AJ_P0042282 Zcrb1 protein_coding protein_coding MGP_AJ_T0042283.1 MGP_AJ_G0022214.1 mouse_genomes_project 15 91135692 91147907 - MGP_AJ_P0042283 Zcrb1 protein_coding protein_coding MGP_AJ_T0042284.1 MGP_AJ_G0022214.1 mouse_genomes_project 15 91135696 91140768 - Zcrb1 protein_coding retained_intron MGP_AJ_T0042285.1 MGP_AJ_G0022214.1 mouse_genomes_project 15 91135699 91140965 - Zcrb1 protein_coding retained_intron MGP_AJ_T0042286.1 MGP_AJ_G0022214.1 mouse_genomes_project 15 91137203 91137731 - Zcrb1 protein_coding retained_intron MGP_AJ_T0042287.1 MGP_AJ_G0022214.1 mouse_genomes_project 15 91137335 91141255 - Zcrb1 protein_coding retained_intron MGP_AJ_T0042288.1 MGP_AJ_G0022214.1 mouse_genomes_project 15 91137387 91147907 - MGP_AJ_P0042288 Zcrb1 protein_coding nonsense_mediated_decay MGP_AJ_T0042289.1 MGP_AJ_G0022214.1 mouse_genomes_project 15 91143653 91147846 - Zcrb1 protein_coding retained_intron MGP_AJ_T0010079.1 MGP_AJ_G0008201.1 mouse_genomes_project 15 82597532 82597630 - Mir1249 miRNA miRNA MGP_AJ_T0040917.1 MGP_AJ_G0021813.1 mouse_genomes_project 15 52023707 52036899 - MGP_AJ_P0040917 Gm9920 protein_coding protein_coding MGP_AJ_T0040918.1 MGP_AJ_G0021813.1 mouse_genomes_project 15 52023855 52036777 - MGP_AJ_P0040918 Gm9920 protein_coding protein_coding MGP_AJ_T0040919.1 MGP_AJ_G0021813.1 mouse_genomes_project 15 52033592 52036994 - Gm9920 protein_coding processed_transcript MGP_AJ_T0040920.1 MGP_AJ_G0021813.1 mouse_genomes_project 15 52035179 52036777 - Gm9920 protein_coding retained_intron MGP_AJ_T0041931.1 MGP_AJ_G0022110.1 mouse_genomes_project 15 80194771 80199717 - MGP_AJ_P0041931 Cyp2d34 protein_coding protein_coding MGP_AJ_T0006790.1 MGP_AJ_G0005596.1 mouse_genomes_project 15 77266582 77281216 + Gm16576 lincRNA lincRNA MGP_AJ_T0041127.1 MGP_AJ_G0021881.1 mouse_genomes_project 15 70700309 70731812 - MGP_AJ_P0041127 Slc45a4 protein_coding protein_coding MGP_AJ_T0041128.1 MGP_AJ_G0021881.1 mouse_genomes_project 15 70700319 70750746 - MGP_AJ_P0041128 Slc45a4 protein_coding protein_coding MGP_AJ_T0041129.1 MGP_AJ_G0021881.1 mouse_genomes_project 15 70703185 70743655 - MGP_AJ_P0041129 Slc45a4 protein_coding protein_coding MGP_AJ_T0041130.1 MGP_AJ_G0021881.1 mouse_genomes_project 15 70703185 70731798 - MGP_AJ_P0041130 Slc45a4 protein_coding protein_coding MGP_AJ_T0041131.1 MGP_AJ_G0021881.1 mouse_genomes_project 15 70703188 70750746 - MGP_AJ_P0041131 Slc45a4 protein_coding protein_coding MGP_AJ_T0041132.1 MGP_AJ_G0021881.1 mouse_genomes_project 15 70709789 70711858 - MGP_AJ_P0041132 Slc45a4 protein_coding protein_coding MGP_AJ_T0041133.1 MGP_AJ_G0021881.1 mouse_genomes_project 15 70731923 70774207 - MGP_AJ_P0041133 Slc45a4 protein_coding protein_coding MGP_AJ_T0041134.1 MGP_AJ_G0021881.1 mouse_genomes_project 15 70732278 70773790 - Slc45a4 protein_coding processed_transcript MGP_AJ_T0040905.1 MGP_AJ_G0021807.1 mouse_genomes_project 15 51340500 51390214 + MGP_AJ_P0040905 Colec10 protein_coding protein_coding MGP_AJ_T0040835.1 MGP_AJ_G0021777.1 mouse_genomes_project 15 36725329 36815724 - MGP_AJ_P0040835 Dpys protein_coding protein_coding MGP_AJ_T0040836.1 MGP_AJ_G0021777.1 mouse_genomes_project 15 36739552 36815727 - MGP_AJ_P0040836 Dpys protein_coding protein_coding MGP_AJ_T0040837.1 MGP_AJ_G0021777.1 mouse_genomes_project 15 36739559 36749953 - MGP_AJ_P0040837 Dpys protein_coding protein_coding MGP_AJ_T0040838.1 MGP_AJ_G0021777.1 mouse_genomes_project 15 36814838 36815727 - Dpys protein_coding processed_transcript MGP_AJ_T0042333.1 MGP_AJ_G0022234.1 mouse_genomes_project 15 94988643 95129286 + MGP_AJ_P0042333 Pced1b protein_coding protein_coding MGP_AJ_T0040987.1 MGP_AJ_G0021839.1 mouse_genomes_project 15 55825641 55866140 - MGP_AJ_P0040987 Tatdn1 protein_coding protein_coding MGP_AJ_T0041898.1 MGP_AJ_G0022092.1 mouse_genomes_project 15 79625449 79632827 + MGP_AJ_P0041898 4930407I10Rik protein_coding protein_coding MGP_AJ_T0041329.1 MGP_AJ_G0021937.1 mouse_genomes_project 15 73533371 73536469 + MGP_AJ_P0041329 Grina protein_coding protein_coding MGP_AJ_T0011390.1 MGP_AJ_G0009512.1 mouse_genomes_project 15 59119917 59120044 + Gm27957 misc_RNA misc_RNA MGP_AJ_T0042069.1 MGP_AJ_G0022156.1 mouse_genomes_project 15 83500748 83527641 + MGP_AJ_P0042069 Ttc38 protein_coding protein_coding MGP_AJ_T0042070.1 MGP_AJ_G0022156.1 mouse_genomes_project 15 83500786 83526558 + Ttc38 protein_coding processed_transcript MGP_AJ_T0042071.1 MGP_AJ_G0022156.1 mouse_genomes_project 15 83500786 83513366 + MGP_AJ_P0042071 Ttc38 protein_coding nonsense_mediated_decay MGP_AJ_T0042101.1 MGP_AJ_G0022166.1 mouse_genomes_project 15 86474902 86493501 + protein_coding processed_transcript MGP_AJ_T0041981.1 MGP_AJ_G0022127.1 mouse_genomes_project 15 81199448 81220317 - MGP_AJ_P0041981 Ttll12 protein_coding nonsense_mediated_decay MGP_AJ_T0041982.1 MGP_AJ_G0022127.1 mouse_genomes_project 15 81199973 81220317 - MGP_AJ_P0041982 Ttll12 protein_coding protein_coding MGP_AJ_T0041983.1 MGP_AJ_G0022127.1 mouse_genomes_project 15 81206072 81211198 - Ttll12 protein_coding retained_intron MGP_AJ_T0042657.1 MGP_AJ_G0022335.1 mouse_genomes_project 15 99416571 99422734 + MGP_AJ_P0042657 Krt88 protein_coding protein_coding MGP_AJ_T0041004.1 MGP_AJ_G0021849.1 mouse_genomes_project 15 58924252 58929707 + MGP_AJ_P0041004 Myc protein_coding protein_coding MGP_AJ_T0041005.1 MGP_AJ_G0021849.1 mouse_genomes_project 15 58924302 58929705 + MGP_AJ_P0041005 Myc protein_coding protein_coding MGP_AJ_T0041006.1 MGP_AJ_G0021849.1 mouse_genomes_project 15 58924475 58929729 + MGP_AJ_P0041006 Myc protein_coding protein_coding MGP_AJ_T0041007.1 MGP_AJ_G0021849.1 mouse_genomes_project 15 58924533 58929422 + MGP_AJ_P0041007 Myc protein_coding protein_coding MGP_AJ_T0041008.1 MGP_AJ_G0021849.1 mouse_genomes_project 15 58924833 58929263 + MGP_AJ_P0041008 Myc protein_coding protein_coding MGP_AJ_T0041009.1 MGP_AJ_G0021849.1 mouse_genomes_project 15 58925945 58926900 + MGP_AJ_P0041009 Myc protein_coding protein_coding MGP_AJ_T0041010.1 MGP_AJ_G0021849.1 mouse_genomes_project 15 58926704 58929608 + MGP_AJ_P0041010 Myc protein_coding protein_coding MGP_AJ_T0042417.1 MGP_AJ_G0022259.1 mouse_genomes_project 15 96318049 96350353 - MGP_AJ_P0042417 Ccnt1 protein_coding protein_coding MGP_AJ_T0042418.1 MGP_AJ_G0022259.1 mouse_genomes_project 15 96318059 96322384 - Ccnt1 protein_coding processed_transcript MGP_AJ_T0042419.1 MGP_AJ_G0022259.1 mouse_genomes_project 15 96322574 96347051 - MGP_AJ_P0042419 Ccnt1 protein_coding nonsense_mediated_decay MGP_AJ_T0042420.1 MGP_AJ_G0022259.1 mouse_genomes_project 15 96322574 96347051 - MGP_AJ_P0042420 Ccnt1 protein_coding protein_coding MGP_AJ_T0042421.1 MGP_AJ_G0022259.1 mouse_genomes_project 15 96323502 96333973 - Ccnt1 protein_coding retained_intron MGP_AJ_T0042422.1 MGP_AJ_G0022259.1 mouse_genomes_project 15 96323703 96326389 - Ccnt1 protein_coding retained_intron MGP_AJ_T0042423.1 MGP_AJ_G0022259.1 mouse_genomes_project 15 96323930 96344553 - Ccnt1 protein_coding retained_intron MGP_AJ_T0042424.1 MGP_AJ_G0022259.1 mouse_genomes_project 15 96328039 96346960 - Ccnt1 protein_coding retained_intron MGP_AJ_T0042425.1 MGP_AJ_G0022259.1 mouse_genomes_project 15 96337888 96347095 - Ccnt1 protein_coding retained_intron MGP_AJ_T0042601.1 MGP_AJ_G0022321.1 mouse_genomes_project 15 98614457 98628469 - MGP_AJ_P0042601 Cela1 protein_coding protein_coding MGP_AJ_T0013114.1 MGP_AJ_G0011209.1 mouse_genomes_project 15 101676383 101678623 - processed_pseudogene processed_pseudogene MGP_AJ_T0006819.1 MGP_AJ_G0005615.1 mouse_genomes_project 15 100329591 100333150 + lincRNA lincRNA MGP_AJ_T0000942.1 MGP_AJ_G0000876.1 mouse_genomes_project 15 83321255 83324612 + TEC TEC MGP_AJ_T0041819.1 MGP_AJ_G0022073.1 mouse_genomes_project 15 78954857 78956231 - MGP_AJ_P0041819 Dnajb7 protein_coding protein_coding MGP_AJ_T0042280.1 MGP_AJ_G0022213.1 mouse_genomes_project 15 91029683 91083430 - MGP_AJ_P0042280 Yaf2 protein_coding protein_coding MGP_AJ_T0042281.1 MGP_AJ_G0022213.1 mouse_genomes_project 15 91029686 91083557 - Yaf2 protein_coding processed_transcript MGP_AJ_T0013062.1 MGP_AJ_G0011157.1 mouse_genomes_project 15 7493596 7494560 - processed_pseudogene processed_pseudogene MGP_AJ_T0041179.1 MGP_AJ_G0021898.1 mouse_genomes_project 15 71925336 71928449 - MGP_AJ_P0041179 Ly6k protein_coding protein_coding MGP_AJ_T0041180.1 MGP_AJ_G0021898.1 mouse_genomes_project 15 71925336 71927996 - MGP_AJ_P0041180 Ly6k protein_coding protein_coding MGP_AJ_T0041402.1 MGP_AJ_G0021952.1 mouse_genomes_project 15 73767015 73790430 + MGP_AJ_P0041402 Hsf1 protein_coding protein_coding MGP_AJ_T0041403.1 MGP_AJ_G0021952.1 mouse_genomes_project 15 73767171 73790384 + MGP_AJ_P0041403 Hsf1 protein_coding unknown_likely_coding MGP_AJ_T0041414.1 MGP_AJ_G0021955.1 mouse_genomes_project 15 73825085 73828102 - MGP_AJ_P0041414 Fbxl6 protein_coding protein_coding MGP_AJ_T0017455.1 MGP_AJ_G0015270.1 mouse_genomes_project 15 57758474 57764855 + 9930014A18Rik processed_transcript antisense MGP_AJ_T0017456.1 MGP_AJ_G0015270.1 mouse_genomes_project 15 57759156 57761813 + 9930014A18Rik processed_transcript TEC MGP_AJ_T0017457.1 MGP_AJ_G0015270.1 mouse_genomes_project 15 57759605 57760143 + 9930014A18Rik processed_transcript antisense MGP_AJ_T0017458.1 MGP_AJ_G0015270.1 mouse_genomes_project 15 57760544 57767997 + 9930014A18Rik processed_transcript antisense MGP_AJ_T0040973.1 MGP_AJ_G0021828.1 mouse_genomes_project 15 55006257 55047296 - MGP_AJ_P0040973 Atad2 protein_coding protein_coding MGP_AJ_T0041299.1 MGP_AJ_G0021934.1 mouse_genomes_project 15 73403534 73410614 - MGP_AJ_P0041299 BC024139 protein_coding nonsense_mediated_decay MGP_AJ_T0041300.1 MGP_AJ_G0021934.1 mouse_genomes_project 15 73403537 73410560 - MGP_AJ_P0041300 BC024139 protein_coding protein_coding MGP_AJ_T0041301.1 MGP_AJ_G0021934.1 mouse_genomes_project 15 73403538 73410574 - MGP_AJ_P0041301 BC024139 protein_coding protein_coding MGP_AJ_T0041302.1 MGP_AJ_G0021934.1 mouse_genomes_project 15 73406826 73410089 - BC024139 protein_coding processed_transcript MGP_AJ_T0040646.1 MGP_AJ_G0021708.1 mouse_genomes_project 15 22467017 22517728 - MGP_AJ_P0040646 Basp1 protein_coding protein_coding MGP_AJ_T0041001.1 MGP_AJ_G0021847.1 mouse_genomes_project 15 57755197 57761284 - MGP_AJ_P0041001 Fam84b protein_coding protein_coding MGP_AJ_T0041002.1 MGP_AJ_G0021847.1 mouse_genomes_project 15 57761235 57793692 - Fam84b protein_coding processed_transcript MGP_AJ_T0102356.1 MGP_AJ_G0040098.1 mouse_genomes_project 15 96275010 96275248 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0006807.1 MGP_AJ_G0005607.1 mouse_genomes_project 15 93879029 94030628 - 2610037D02Rik lincRNA lincRNA MGP_AJ_T0006811.1 MGP_AJ_G0005607.1 mouse_genomes_project 15 94028518 94031515 - 2610037D02Rik lincRNA lincRNA MGP_AJ_T0010028.1 MGP_AJ_G0008150.1 mouse_genomes_project 15 9775365 9775505 + miRNA miRNA MGP_AJ_T0099533.1 MGP_AJ_G0037499.1 mouse_genomes_project 15 5136397 5136508 + Gm24144 snRNA snRNA MGP_AJ_T0100851.1 MGP_AJ_G0038817.1 mouse_genomes_project 15 81964726 81964870 - Gm22890 snoRNA snoRNA MGP_AJ_T0006801.1 MGP_AJ_G0005603.1 mouse_genomes_project 15 86936174 86940002 - Gm26798 lincRNA lincRNA MGP_AJ_T0040439.1 MGP_AJ_G0021649.1 mouse_genomes_project 15 1886647 1964897 - MGP_AJ_P0040439 C7 protein_coding protein_coding MGP_AJ_T0042312.1 MGP_AJ_G0022221.1 mouse_genomes_project 15 92356703 92834625 + MGP_AJ_P0042312 Tmem117 protein_coding protein_coding MGP_AJ_T0041717.1 MGP_AJ_G0022049.1 mouse_genomes_project 15 77350399 77360716 - MGP_AJ_P0041717 Cbx6 protein_coding protein_coding MGP_AJ_T0041718.1 MGP_AJ_G0022049.1 mouse_genomes_project 15 77352636 77360742 - MGP_AJ_P0041718 Cbx6 protein_coding protein_coding MGP_AJ_T0041719.1 MGP_AJ_G0022049.1 mouse_genomes_project 15 77355131 77360303 - Cbx6 protein_coding processed_transcript MGP_AJ_T0041720.1 MGP_AJ_G0022049.1 mouse_genomes_project 15 77355272 77360785 - MGP_AJ_P0041720 Cbx6 protein_coding protein_coding MGP_AJ_T0041721.1 MGP_AJ_G0022049.1 mouse_genomes_project 15 77359076 77360830 - Cbx6 protein_coding processed_transcript MGP_AJ_T0041722.1 MGP_AJ_G0022049.1 mouse_genomes_project 15 77359749 77360779 - Cbx6 protein_coding processed_transcript MGP_AJ_T0099563.1 MGP_AJ_G0037529.1 mouse_genomes_project 15 70858780 70858907 + Gm22106 snRNA snRNA MGP_AJ_T0010066.1 MGP_AJ_G0008188.1 mouse_genomes_project 15 78486243 78486325 + Mir5113 miRNA miRNA MGP_AJ_T0011388.1 MGP_AJ_G0009510.1 mouse_genomes_project 15 59022275 59022474 + Gm27782 misc_RNA misc_RNA MGP_AJ_T0042041.1 MGP_AJ_G0022144.1 mouse_genomes_project 15 82589956 82634388 - MGP_AJ_P0042041 5031439G07Rik protein_coding protein_coding MGP_AJ_T0042042.1 MGP_AJ_G0022144.1 mouse_genomes_project 15 82594006 82606977 - 5031439G07Rik protein_coding retained_intron MGP_AJ_T0042043.1 MGP_AJ_G0022144.1 mouse_genomes_project 15 82601680 82635138 - 5031439G07Rik protein_coding processed_transcript MGP_AJ_T0041674.1 MGP_AJ_G0022035.1 mouse_genomes_project 15 76939941 76964045 - MGP_AJ_P0041674 Csnk1e protein_coding protein_coding MGP_AJ_T0041675.1 MGP_AJ_G0022035.1 mouse_genomes_project 15 76941212 76943385 - Csnk1e protein_coding retained_intron MGP_AJ_T0041676.1 MGP_AJ_G0022035.1 mouse_genomes_project 15 76941233 76964048 - MGP_AJ_P0041676 Csnk1e protein_coding protein_coding MGP_AJ_T0041677.1 MGP_AJ_G0022035.1 mouse_genomes_project 15 76944556 76963863 - MGP_AJ_P0041677 Csnk1e protein_coding protein_coding MGP_AJ_T0041678.1 MGP_AJ_G0022035.1 mouse_genomes_project 15 76945718 76946374 - Csnk1e protein_coding retained_intron MGP_AJ_T0041679.1 MGP_AJ_G0022035.1 mouse_genomes_project 15 76946240 76947634 - Csnk1e protein_coding retained_intron MGP_AJ_T0041680.1 MGP_AJ_G0022035.1 mouse_genomes_project 15 76946812 76948519 - Csnk1e protein_coding retained_intron MGP_AJ_T0041681.1 MGP_AJ_G0022035.1 mouse_genomes_project 15 76946930 76951935 - Csnk1e protein_coding retained_intron MGP_AJ_T0041682.1 MGP_AJ_G0022035.1 mouse_genomes_project 15 76948473 76961065 - MGP_AJ_P0041682 Csnk1e protein_coding protein_coding MGP_AJ_T0041683.1 MGP_AJ_G0022035.1 mouse_genomes_project 15 76948542 76963863 - MGP_AJ_P0041683 Csnk1e protein_coding protein_coding MGP_AJ_T0041684.1 MGP_AJ_G0022035.1 mouse_genomes_project 15 76952113 76965954 - MGP_AJ_P0041684 Csnk1e protein_coding protein_coding MGP_AJ_T0040694.1 MGP_AJ_G0021729.1 mouse_genomes_project 15 28645404 28656451 - MGP_AJ_P0040694 Cct5 protein_coding protein_coding MGP_AJ_T0040695.1 MGP_AJ_G0021729.1 mouse_genomes_project 15 28646586 28647666 - Cct5 protein_coding retained_intron MGP_AJ_T0040696.1 MGP_AJ_G0021729.1 mouse_genomes_project 15 28648049 28649133 - Cct5 protein_coding retained_intron MGP_AJ_T0040697.1 MGP_AJ_G0021729.1 mouse_genomes_project 15 28648949 28656143 - MGP_AJ_P0040697 Cct5 protein_coding protein_coding MGP_AJ_T0040698.1 MGP_AJ_G0021729.1 mouse_genomes_project 15 28650045 28656344 - Cct5 protein_coding retained_intron MGP_AJ_T0006824.1 MGP_AJ_G0005620.1 mouse_genomes_project 15 101204385 101227556 - D930007P13Rik lincRNA lincRNA MGP_AJ_T0013078.1 MGP_AJ_G0011173.1 mouse_genomes_project 15 41943889 41944231 - processed_pseudogene processed_pseudogene MGP_AJ_T0013107.1 MGP_AJ_G0011202.1 mouse_genomes_project 15 88616097 88616303 + processed_pseudogene processed_pseudogene MGP_AJ_T0042650.1 MGP_AJ_G0022333.1 mouse_genomes_project 15 99378868 99379809 + Krt7 protein_coding processed_transcript MGP_AJ_T0042651.1 MGP_AJ_G0022333.1 mouse_genomes_project 15 99378877 99380221 + Krt7 protein_coding processed_transcript MGP_AJ_T0042652.1 MGP_AJ_G0022333.1 mouse_genomes_project 15 99378877 99395400 + Krt7 protein_coding processed_transcript MGP_AJ_T0042653.1 MGP_AJ_G0022333.1 mouse_genomes_project 15 99378928 99387307 + MGP_AJ_P0042653 Krt7 protein_coding protein_coding MGP_AJ_T0042654.1 MGP_AJ_G0022333.1 mouse_genomes_project 15 99380227 99398114 + MGP_AJ_P0042654 Krt7 protein_coding protein_coding MGP_AJ_T0042655.1 MGP_AJ_G0022333.1 mouse_genomes_project 15 99380274 99395578 + Krt7 protein_coding retained_intron MGP_AJ_T0099532.1 MGP_AJ_G0037498.1 mouse_genomes_project 15 1937039 1937142 + Gm25652 snRNA snRNA MGP_AJ_T0041984.1 MGP_AJ_G0022128.1 mouse_genomes_project 15 81227706 81351808 - MGP_AJ_P0041984 Scube1 protein_coding protein_coding MGP_AJ_T0041985.1 MGP_AJ_G0022128.1 mouse_genomes_project 15 81230122 81351808 - Scube1 protein_coding retained_intron MGP_AJ_T0041986.1 MGP_AJ_G0022128.1 mouse_genomes_project 15 81230126 81351808 - MGP_AJ_P0041986 Scube1 protein_coding protein_coding MGP_AJ_T0041987.1 MGP_AJ_G0022128.1 mouse_genomes_project 15 81231629 81351808 - MGP_AJ_P0041987 Scube1 protein_coding protein_coding MGP_AJ_T0041988.1 MGP_AJ_G0022128.1 mouse_genomes_project 15 81231629 81351808 - MGP_AJ_P0041988 Scube1 protein_coding protein_coding MGP_AJ_T0006755.1 MGP_AJ_G0005573.1 mouse_genomes_project 15 29313423 29317521 - Snhg18 lincRNA lincRNA MGP_AJ_T0099557.1 MGP_AJ_G0037523.1 mouse_genomes_project 15 61027095 61027200 + Gm25628 snRNA snRNA MGP_AJ_T0042711.1 MGP_AJ_G0022368.1 mouse_genomes_project 15 100338476 100340765 + MGP_AJ_P0042711 Mfsd5 protein_coding protein_coding MGP_AJ_T0041715.1 MGP_AJ_G0022048.1 mouse_genomes_project 15 77313532 77360742 - MGP_AJ_P0041715 Npcd protein_coding protein_coding MGP_AJ_T0041716.1 MGP_AJ_G0022048.1 mouse_genomes_project 15 77313532 77360742 - MGP_AJ_P0041716 Npcd protein_coding protein_coding MGP_AJ_T0042686.1 MGP_AJ_G0022361.1 mouse_genomes_project 15 100176047 100194330 - Spryd3 protein_coding retained_intron MGP_AJ_T0042687.1 MGP_AJ_G0022361.1 mouse_genomes_project 15 100176047 100194372 - MGP_AJ_P0042687 Spryd3 protein_coding protein_coding MGP_AJ_T0042688.1 MGP_AJ_G0022361.1 mouse_genomes_project 15 100177735 100187017 - Spryd3 protein_coding processed_transcript MGP_AJ_T0042689.1 MGP_AJ_G0022361.1 mouse_genomes_project 15 100188349 100189040 - Spryd3 protein_coding retained_intron MGP_AJ_T0042458.1 MGP_AJ_G0022274.1 mouse_genomes_project 15 96682675 96688185 - MGP_AJ_P0042458 Dhh protein_coding protein_coding MGP_AJ_T0041522.1 MGP_AJ_G0021991.1 mouse_genomes_project 15 75194473 75277110 - MGP_AJ_P0041522 Myh9 protein_coding protein_coding MGP_AJ_T0041523.1 MGP_AJ_G0021991.1 mouse_genomes_project 15 75199213 75201076 - Myh9 protein_coding retained_intron MGP_AJ_T0041524.1 MGP_AJ_G0021991.1 mouse_genomes_project 15 75222068 75276991 - Myh9 protein_coding retained_intron MGP_AJ_T0041525.1 MGP_AJ_G0021991.1 mouse_genomes_project 15 75224099 75277040 - Myh9 protein_coding retained_intron MGP_AJ_T0041526.1 MGP_AJ_G0021991.1 mouse_genomes_project 15 75224615 75276982 - MGP_AJ_P0041526 Myh9 protein_coding nonsense_mediated_decay MGP_AJ_T0041527.1 MGP_AJ_G0021991.1 mouse_genomes_project 15 75228526 75247093 - Myh9 protein_coding processed_transcript MGP_AJ_T0041528.1 MGP_AJ_G0021991.1 mouse_genomes_project 15 75239424 75277040 - Myh9 protein_coding retained_intron MGP_AJ_T0041247.1 MGP_AJ_G0021918.1 mouse_genomes_project 15 73144408 73149533 + MGP_AJ_P0041247 Gsdmd protein_coding protein_coding MGP_AJ_T0042045.1 MGP_AJ_G0022146.1 mouse_genomes_project 15 82689491 82715275 + MGP_AJ_P0042045 Fam118a protein_coding protein_coding MGP_AJ_T0040683.1 MGP_AJ_G0021724.1 mouse_genomes_project 15 28334466 28415363 - MGP_AJ_P0040683 Ankrd33b protein_coding protein_coding MGP_AJ_T0040684.1 MGP_AJ_G0021724.1 mouse_genomes_project 15 28334466 28415330 - MGP_AJ_P0040684 Ankrd33b protein_coding protein_coding MGP_AJ_T0040685.1 MGP_AJ_G0021724.1 mouse_genomes_project 15 28335815 28415136 - MGP_AJ_P0040685 Ankrd33b protein_coding nonsense_mediated_decay MGP_AJ_T0040686.1 MGP_AJ_G0021724.1 mouse_genomes_project 15 28336724 28415330 - MGP_AJ_P0040686 Ankrd33b protein_coding nonsense_mediated_decay MGP_AJ_T0040687.1 MGP_AJ_G0021724.1 mouse_genomes_project 15 28367388 28415172 - MGP_AJ_P0040687 Ankrd33b protein_coding protein_coding MGP_AJ_T0041208.1 MGP_AJ_G0021906.1 mouse_genomes_project 15 72512626 72516555 + MGP_AJ_P0041208 Ly6f protein_coding protein_coding MGP_AJ_T0041209.1 MGP_AJ_G0021906.1 mouse_genomes_project 15 72512626 72516279 + MGP_AJ_P0041209 Ly6f protein_coding protein_coding MGP_AJ_T0041613.1 MGP_AJ_G0022022.1 mouse_genomes_project 15 76544233 76553283 + MGP_AJ_P0041613 Gcat protein_coding protein_coding MGP_AJ_T0041614.1 MGP_AJ_G0022022.1 mouse_genomes_project 15 76544233 76557464 + MGP_AJ_P0041614 Gcat protein_coding protein_coding MGP_AJ_T0041615.1 MGP_AJ_G0022022.1 mouse_genomes_project 15 76556817 76558491 + MGP_AJ_P0041615 Gcat protein_coding protein_coding MGP_AJ_T0010045.1 MGP_AJ_G0008167.1 mouse_genomes_project 15 50551785 50551860 - Mir28c miRNA miRNA MGP_AJ_T0042665.1 MGP_AJ_G0022342.1 mouse_genomes_project 15 99547003 99557566 - MGP_AJ_P0042665 Krt75 protein_coding protein_coding MGP_AJ_T0011397.1 MGP_AJ_G0009519.1 mouse_genomes_project 15 96977603 96977691 - Gm25057 misc_RNA misc_RNA MGP_AJ_T0040444.1 MGP_AJ_G0021653.1 mouse_genomes_project 15 2059592 2099124 + MGP_AJ_P0040444 Prkaa1 protein_coding protein_coding MGP_AJ_T0042758.1 MGP_AJ_G0022380.1 mouse_genomes_project 15 100582723 100588206 + MGP_AJ_P0042758 Tarbp2 protein_coding nonsense_mediated_decay MGP_AJ_T0042759.1 MGP_AJ_G0022380.1 mouse_genomes_project 15 100582777 100585512 + Tarbp2 protein_coding retained_intron MGP_AJ_T0042760.1 MGP_AJ_G0022380.1 mouse_genomes_project 15 100582888 100588134 + MGP_AJ_P0042760 Tarbp2 protein_coding protein_coding MGP_AJ_T0042761.1 MGP_AJ_G0022380.1 mouse_genomes_project 15 100582958 100588208 + Tarbp2 protein_coding retained_intron MGP_AJ_T0042762.1 MGP_AJ_G0022380.1 mouse_genomes_project 15 100582986 100586281 + MGP_AJ_P0042762 Tarbp2 protein_coding protein_coding MGP_AJ_T0042763.1 MGP_AJ_G0022380.1 mouse_genomes_project 15 100582990 100588208 + MGP_AJ_P0042763 Tarbp2 protein_coding protein_coding MGP_AJ_T0042764.1 MGP_AJ_G0022380.1 mouse_genomes_project 15 100583029 100584252 + Tarbp2 protein_coding retained_intron MGP_AJ_T0042765.1 MGP_AJ_G0022380.1 mouse_genomes_project 15 100583078 100588136 + MGP_AJ_P0042765 Tarbp2 protein_coding protein_coding MGP_AJ_T0042766.1 MGP_AJ_G0022380.1 mouse_genomes_project 15 100583088 100587751 + Tarbp2 protein_coding processed_transcript MGP_AJ_T0042767.1 MGP_AJ_G0022380.1 mouse_genomes_project 15 100583099 100586871 + Tarbp2 protein_coding retained_intron MGP_AJ_T0042768.1 MGP_AJ_G0022380.1 mouse_genomes_project 15 100583257 100587083 + MGP_AJ_P0042768 Tarbp2 protein_coding protein_coding MGP_AJ_T0042769.1 MGP_AJ_G0022380.1 mouse_genomes_project 15 100583330 100586612 + MGP_AJ_P0042769 Tarbp2 protein_coding nonsense_mediated_decay MGP_AJ_T0042770.1 MGP_AJ_G0022380.1 mouse_genomes_project 15 100583333 100587434 + MGP_AJ_P0042770 Tarbp2 protein_coding protein_coding MGP_AJ_T0042771.1 MGP_AJ_G0022380.1 mouse_genomes_project 15 100585571 100586972 + Tarbp2 protein_coding retained_intron MGP_AJ_T0041173.1 MGP_AJ_G0021895.1 mouse_genomes_project 15 71871684 71876880 - MGP_AJ_P0041173 Lynx1 protein_coding protein_coding MGP_AJ_T0041174.1 MGP_AJ_G0021895.1 mouse_genomes_project 15 71875427 71876848 - MGP_AJ_P0041174 Lynx1 protein_coding protein_coding MGP_AJ_T0041175.1 MGP_AJ_G0021895.1 mouse_genomes_project 15 71876152 71876858 - Lynx1 protein_coding retained_intron MGP_AJ_T0099585.1 MGP_AJ_G0037551.1 mouse_genomes_project 15 100691763 100691870 - Gm25141 snRNA snRNA MGP_AJ_T0011394.1 MGP_AJ_G0009516.1 mouse_genomes_project 15 89340186 89340472 - Gm25389 misc_RNA misc_RNA MGP_AJ_T0040477.1 MGP_AJ_G0021660.1 mouse_genomes_project 15 3730719 3793245 - MGP_AJ_P0040477 Osmr protein_coding protein_coding MGP_AJ_T0040478.1 MGP_AJ_G0021660.1 mouse_genomes_project 15 3732179 3793245 - MGP_AJ_P0040478 Osmr protein_coding protein_coding MGP_AJ_T0040479.1 MGP_AJ_G0021660.1 mouse_genomes_project 15 3738027 3742251 - Osmr protein_coding retained_intron MGP_AJ_T0040480.1 MGP_AJ_G0021660.1 mouse_genomes_project 15 3754588 3792544 - Osmr protein_coding retained_intron MGP_AJ_T0040481.1 MGP_AJ_G0021660.1 mouse_genomes_project 15 3761796 3792533 - Osmr protein_coding retained_intron MGP_AJ_T0040482.1 MGP_AJ_G0021660.1 mouse_genomes_project 15 3772899 3792572 - Osmr protein_coding retained_intron MGP_AJ_T0042646.1 MGP_AJ_G0022329.1 mouse_genomes_project 15 99187346 99195730 + MGP_AJ_P0042646 Grasp protein_coding protein_coding MGP_AJ_T0041104.1 MGP_AJ_G0021873.1 mouse_genomes_project 15 68542538 68819240 - MGP_AJ_P0041104 Fam135b protein_coding protein_coding MGP_AJ_T0041520.1 MGP_AJ_G0021990.1 mouse_genomes_project 15 75181685 75186951 - MGP_AJ_P0041520 Apol8 protein_coding protein_coding MGP_AJ_T0041521.1 MGP_AJ_G0021990.1 mouse_genomes_project 15 75182499 75189104 - MGP_AJ_P0041521 Apol8 protein_coding protein_coding MGP_AJ_T0042659.1 MGP_AJ_G0022337.1 mouse_genomes_project 15 99442088 99449676 + MGP_AJ_P0042659 Krt86 protein_coding protein_coding MGP_AJ_T0041445.1 MGP_AJ_G0021963.1 mouse_genomes_project 15 73955441 73957106 - MGP_AJ_P0041445 Foxh1 protein_coding protein_coding MGP_AJ_T0010026.1 MGP_AJ_G0008148.1 mouse_genomes_project 15 2784999 2785113 + Gm27760 miRNA miRNA MGP_AJ_T0041553.1 MGP_AJ_G0022000.1 mouse_genomes_project 15 75718658 75733719 - MGP_AJ_P0041553 protein_coding protein_coding MGP_AJ_T0042513.1 MGP_AJ_G0022293.1 mouse_genomes_project 15 97404400 97408160 + MGP_AJ_P0042513 Aqp5 protein_coding protein_coding MGP_AJ_T0042514.1 MGP_AJ_G0022293.1 mouse_genomes_project 15 97404579 97408381 + MGP_AJ_P0042514 Aqp5 protein_coding protein_coding MGP_AJ_T0041899.1 MGP_AJ_G0022093.1 mouse_genomes_project 15 79636254 79693021 + MGP_AJ_P0041899 Mei1 protein_coding protein_coding MGP_AJ_T0041900.1 MGP_AJ_G0022093.1 mouse_genomes_project 15 79636411 79693185 + MGP_AJ_P0041900 Mei1 protein_coding unknown_likely_coding MGP_AJ_T0041901.1 MGP_AJ_G0022093.1 mouse_genomes_project 15 79648617 79693171 + MGP_AJ_P0041901 Mei1 protein_coding protein_coding MGP_AJ_T0041902.1 MGP_AJ_G0022093.1 mouse_genomes_project 15 79648629 79693173 + MGP_AJ_P0041902 Mei1 protein_coding protein_coding MGP_AJ_T0041903.1 MGP_AJ_G0022093.1 mouse_genomes_project 15 79649330 79693098 + MGP_AJ_P0041903 Mei1 protein_coding nonsense_mediated_decay MGP_AJ_T0017467.1 MGP_AJ_G0015277.1 mouse_genomes_project 15 74728505 74732238 + processed_transcript retained_intron MGP_AJ_T0042388.1 MGP_AJ_G0022244.1 mouse_genomes_project 15 95837265 95875562 + MGP_AJ_P0042388 Pfkm protein_coding protein_coding MGP_AJ_T0006786.1 MGP_AJ_G0005592.1 mouse_genomes_project 15 74368846 74380713 + 1700109K24Rik lincRNA lincRNA MGP_AJ_T0040440.1 MGP_AJ_G0021650.1 mouse_genomes_project 15 2009693 2024223 - MGP_AJ_P0040440 Card6 protein_coding protein_coding MGP_AJ_T0040441.1 MGP_AJ_G0021650.1 mouse_genomes_project 15 2020825 2024168 - MGP_AJ_P0040441 Card6 protein_coding protein_coding MGP_AJ_T0042645.1 MGP_AJ_G0022328.1 mouse_genomes_project 15 99136855 99176839 + MGP_AJ_P0042645 Acvr1b protein_coding protein_coding MGP_AJ_T0098922.1 MGP_AJ_G0036902.1 mouse_genomes_project 15 34843698 34846272 - Gm15940 sense_intronic sense_intronic MGP_AJ_T0042800.1 MGP_AJ_G0022390.1 mouse_genomes_project 15 101046115 101094774 + Hoxc5 protein_coding processed_transcript MGP_AJ_T0042808.1 MGP_AJ_G0022390.1 mouse_genomes_project 15 101092912 101096527 + MGP_AJ_P0042808 Hoxc5 protein_coding protein_coding MGP_AJ_T0010096.1 MGP_AJ_G0008218.1 mouse_genomes_project 15 99620868 99640564 + miRNA miRNA MGP_AJ_T0041699.1 MGP_AJ_G0022045.1 mouse_genomes_project 15 77248574 77266341 - Sun2 protein_coding retained_intron MGP_AJ_T0041700.1 MGP_AJ_G0022045.1 mouse_genomes_project 15 77248574 77266419 - MGP_AJ_P0041700 Sun2 protein_coding protein_coding MGP_AJ_T0041701.1 MGP_AJ_G0022045.1 mouse_genomes_project 15 77248575 77266389 - MGP_AJ_P0041701 Sun2 protein_coding protein_coding MGP_AJ_T0041702.1 MGP_AJ_G0022045.1 mouse_genomes_project 15 77248577 77266421 - MGP_AJ_P0041702 Sun2 protein_coding protein_coding MGP_AJ_T0041703.1 MGP_AJ_G0022045.1 mouse_genomes_project 15 77254128 77266389 - Sun2 protein_coding retained_intron MGP_AJ_T0041704.1 MGP_AJ_G0022045.1 mouse_genomes_project 15 77258026 77259870 - Sun2 protein_coding retained_intron MGP_AJ_T0041705.1 MGP_AJ_G0022045.1 mouse_genomes_project 15 77262534 77266000 - MGP_AJ_P0041705 Sun2 protein_coding protein_coding MGP_AJ_T0041706.1 MGP_AJ_G0022045.1 mouse_genomes_project 15 77263616 77265988 - MGP_AJ_P0041706 Sun2 protein_coding protein_coding MGP_AJ_T0041707.1 MGP_AJ_G0022045.1 mouse_genomes_project 15 77263723 77265977 - MGP_AJ_P0041707 Sun2 protein_coding protein_coding MGP_AJ_T0042429.1 MGP_AJ_G0022262.1 mouse_genomes_project 15 96413754 96427989 + MGP_AJ_P0042429 Cacnb3 protein_coding protein_coding MGP_AJ_T0042430.1 MGP_AJ_G0022262.1 mouse_genomes_project 15 96416392 96427989 + MGP_AJ_P0042430 Cacnb3 protein_coding protein_coding MGP_AJ_T0003617.1 MGP_AJ_G0003272.1 mouse_genomes_project 15 76949296 76953682 + Gm16059 antisense antisense MGP_AJ_T0042797.1 MGP_AJ_G0022387.1 mouse_genomes_project 15 101015533 101017395 + MGP_AJ_P0042797 Hoxc12 protein_coding protein_coding MGP_AJ_T0042553.1 MGP_AJ_G0022306.1 mouse_genomes_project 15 98077841 98112419 + MGP_AJ_P0042553 Atf1 protein_coding protein_coding MGP_AJ_T0042554.1 MGP_AJ_G0022306.1 mouse_genomes_project 15 98077895 98105599 + MGP_AJ_P0042554 Atf1 protein_coding protein_coding MGP_AJ_T0042555.1 MGP_AJ_G0022306.1 mouse_genomes_project 15 98078287 98082846 + MGP_AJ_P0042555 Atf1 protein_coding protein_coding MGP_AJ_T0042556.1 MGP_AJ_G0022306.1 mouse_genomes_project 15 98082190 98102105 + MGP_AJ_P0042556 Atf1 protein_coding protein_coding MGP_AJ_T0042557.1 MGP_AJ_G0022306.1 mouse_genomes_project 15 98082202 98083045 + Atf1 protein_coding retained_intron MGP_AJ_T0042558.1 MGP_AJ_G0022306.1 mouse_genomes_project 15 98082229 98105535 + MGP_AJ_P0042558 Atf1 protein_coding protein_coding MGP_AJ_T0042559.1 MGP_AJ_G0022306.1 mouse_genomes_project 15 98082764 98111231 + MGP_AJ_P0042559 Atf1 protein_coding nonsense_mediated_decay MGP_AJ_T0042560.1 MGP_AJ_G0022306.1 mouse_genomes_project 15 98082782 98111274 + Atf1 protein_coding processed_transcript MGP_AJ_T0042561.1 MGP_AJ_G0022306.1 mouse_genomes_project 15 98105365 98111063 + MGP_AJ_P0042561 Atf1 protein_coding protein_coding MGP_AJ_T0042563.1 MGP_AJ_G0022308.1 mouse_genomes_project 15 98160587 98172147 + MGP_AJ_P0042563 protein_coding protein_coding MGP_AJ_T0042549.1 MGP_AJ_G0022305.1 mouse_genomes_project 15 97884291 98069505 + MGP_AJ_P0042549 Dip2b protein_coding protein_coding MGP_AJ_T0042550.1 MGP_AJ_G0022305.1 mouse_genomes_project 15 97999644 98065701 + MGP_AJ_P0042550 Dip2b protein_coding protein_coding MGP_AJ_T0042551.1 MGP_AJ_G0022305.1 mouse_genomes_project 15 97999644 98069505 + MGP_AJ_P0042551 Dip2b protein_coding protein_coding MGP_AJ_T0042552.1 MGP_AJ_G0022305.1 mouse_genomes_project 15 98053226 98055720 + Dip2b protein_coding processed_transcript MGP_AJ_T0010030.1 MGP_AJ_G0008152.1 mouse_genomes_project 15 18957423 18957592 - Gm44373 miRNA miRNA MGP_AJ_T0041401.1 MGP_AJ_G0021951.1 mouse_genomes_project 15 73746429 73748460 + MGP_AJ_P0041401 Scx protein_coding protein_coding MGP_AJ_T0042301.1 MGP_AJ_G0022218.1 mouse_genomes_project 15 92256703 92277633 - MGP_AJ_P0042301 Pus7l protein_coding protein_coding MGP_AJ_T0042302.1 MGP_AJ_G0022218.1 mouse_genomes_project 15 92270182 92277579 - Pus7l protein_coding retained_intron MGP_AJ_T0042303.1 MGP_AJ_G0022218.1 mouse_genomes_project 15 92274835 92277572 - MGP_AJ_P0042303 Pus7l protein_coding protein_coding MGP_AJ_T0042660.1 MGP_AJ_G0022338.1 mouse_genomes_project 15 99454833 99458299 - Krt83 protein_coding retained_intron MGP_AJ_T0042661.1 MGP_AJ_G0022338.1 mouse_genomes_project 15 99454833 99462610 - MGP_AJ_P0042661 Krt83 protein_coding protein_coding MGP_AJ_T0042331.1 MGP_AJ_G0022232.1 mouse_genomes_project 15 94733749 94770081 - MGP_AJ_P0042331 Slc38a4 protein_coding unknown_likely_coding MGP_AJ_T0010049.1 MGP_AJ_G0008171.1 mouse_genomes_project 15 68891773 68891878 + miRNA miRNA MGP_AJ_T0098598.1 MGP_AJ_G0036582.1 mouse_genomes_project 15 77222795 77222919 + n-R5s40 rRNA rRNA MGP_AJ_T0041832.1 MGP_AJ_G0022077.1 mouse_genomes_project 15 79216776 79244570 + MGP_AJ_P0041832 L3mbtl2 protein_coding protein_coding MGP_AJ_T0041833.1 MGP_AJ_G0022077.1 mouse_genomes_project 15 79216821 79244560 + MGP_AJ_P0041833 L3mbtl2 protein_coding protein_coding MGP_AJ_T0041834.1 MGP_AJ_G0022077.1 mouse_genomes_project 15 79216841 79244560 + L3mbtl2 protein_coding retained_intron MGP_AJ_T0041835.1 MGP_AJ_G0022077.1 mouse_genomes_project 15 79216843 79244554 + L3mbtl2 protein_coding processed_transcript MGP_AJ_T0041836.1 MGP_AJ_G0022077.1 mouse_genomes_project 15 79216843 79244570 + MGP_AJ_P0041836 L3mbtl2 protein_coding protein_coding MGP_AJ_T0041837.1 MGP_AJ_G0022077.1 mouse_genomes_project 15 79216888 79238320 + L3mbtl2 protein_coding processed_transcript MGP_AJ_T0041838.1 MGP_AJ_G0022077.1 mouse_genomes_project 15 79222270 79223961 + L3mbtl2 protein_coding retained_intron MGP_AJ_T0041839.1 MGP_AJ_G0022077.1 mouse_genomes_project 15 79222339 79231888 + L3mbtl2 protein_coding processed_transcript MGP_AJ_T0041840.1 MGP_AJ_G0022077.1 mouse_genomes_project 15 79231776 79233549 + MGP_AJ_P0041840 L3mbtl2 protein_coding protein_coding MGP_AJ_T0041842.1 MGP_AJ_G0022077.1 mouse_genomes_project 15 79238263 79240105 + L3mbtl2 protein_coding retained_intron MGP_AJ_T0041843.1 MGP_AJ_G0022077.1 mouse_genomes_project 15 79242276 79243442 + L3mbtl2 protein_coding retained_intron MGP_AJ_T0013056.1 MGP_AJ_G0011151.1 mouse_genomes_project 15 2126118 2127353 + processed_pseudogene processed_pseudogene MGP_AJ_T0040996.1 MGP_AJ_G0021844.1 mouse_genomes_project 15 56318154 56487010 + MGP_AJ_P0040996 Nsmce2 protein_coding protein_coding MGP_AJ_T0040997.1 MGP_AJ_G0021844.1 mouse_genomes_project 15 56318154 56549558 + MGP_AJ_P0040997 Nsmce2 protein_coding protein_coding MGP_AJ_T0011385.1 MGP_AJ_G0009507.1 mouse_genomes_project 15 40203437 40203733 - Gm22037 misc_RNA misc_RNA MGP_AJ_T0010088.1 MGP_AJ_G0008210.1 mouse_genomes_project 15 94153665 94153757 + Gm25397 miRNA miRNA MGP_AJ_T0042092.1 MGP_AJ_G0022162.1 mouse_genomes_project 15 83898407 84182088 + MGP_AJ_P0042092 Tbc1d22a protein_coding protein_coding MGP_AJ_T0042829.1 MGP_AJ_G0022400.1 mouse_genomes_project 15 101392179 101394373 - MGP_AJ_P0042829 Gpr84 protein_coding protein_coding MGP_AJ_T0041097.1 MGP_AJ_G0021870.1 mouse_genomes_project 15 64112033 64138387 - MGP_AJ_P0041097 St3gal1 protein_coding unknown_likely_coding MGP_AJ_T0041165.1 MGP_AJ_G0021889.1 mouse_genomes_project 15 71826020 71833255 - MGP_AJ_P0041165 Jrk protein_coding protein_coding MGP_AJ_T0042072.1 MGP_AJ_G0022157.1 mouse_genomes_project 15 83528529 83546441 + MGP_AJ_P0042072 Gtse1 protein_coding protein_coding MGP_AJ_T0098602.1 MGP_AJ_G0036586.1 mouse_genomes_project 15 98374823 98374933 + n-R5s43 rRNA rRNA MGP_AJ_T0003632.1 MGP_AJ_G0003285.1 mouse_genomes_project 15 97531464 97540356 - Gm16537 antisense antisense MGP_AJ_T0042677.1 MGP_AJ_G0022353.1 mouse_genomes_project 15 99898237 99909215 - MGP_AJ_P0042677 Krt77 protein_coding protein_coding MGP_AJ_T0006772.1 MGP_AJ_G0005587.1 mouse_genomes_project 15 51874576 51887056 + Gm26684 lincRNA lincRNA MGP_AJ_T0042466.1 MGP_AJ_G0022277.1 mouse_genomes_project 15 96826818 96835249 + MGP_AJ_P0042466 protein_coding protein_coding MGP_AJ_T0042259.1 MGP_AJ_G0022208.1 mouse_genomes_project 15 89396484 89549433 + MGP_AJ_P0042259 Lrrk2 protein_coding protein_coding MGP_AJ_T0042260.1 MGP_AJ_G0022208.1 mouse_genomes_project 15 89396590 89549344 + MGP_AJ_P0042260 Lrrk2 protein_coding unknown_likely_coding MGP_AJ_T0042261.1 MGP_AJ_G0022208.1 mouse_genomes_project 15 89464971 89517656 + Lrrk2 protein_coding processed_transcript MGP_AJ_T0042262.1 MGP_AJ_G0022208.1 mouse_genomes_project 15 89498438 89504584 + Lrrk2 protein_coding processed_transcript MGP_AJ_T0042263.1 MGP_AJ_G0022208.1 mouse_genomes_project 15 89506470 89549339 + Lrrk2 protein_coding processed_transcript MGP_AJ_T0042264.1 MGP_AJ_G0022208.1 mouse_genomes_project 15 89541564 89549339 + Lrrk2 protein_coding retained_intron MGP_AJ_T0042265.1 MGP_AJ_G0022208.1 mouse_genomes_project 15 89547942 89549432 + Lrrk2 protein_coding retained_intron MGP_AJ_T0102346.1 MGP_AJ_G0040088.1 mouse_genomes_project 15 72480358 72483516 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0010103.1 MGP_AJ_G0008225.1 mouse_genomes_project 15 101369427 101369524 + Mir148b miRNA miRNA MGP_AJ_T0040503.1 MGP_AJ_G0021667.1 mouse_genomes_project 15 5215551 5372106 - MGP_AJ_P0040503 Nipbl protein_coding protein_coding MGP_AJ_T0098599.1 MGP_AJ_G0036583.1 mouse_genomes_project 15 79917894 79918013 + n-R5s41 rRNA rRNA MGP_AJ_T0040782.1 MGP_AJ_G0021760.1 mouse_genomes_project 15 34092968 34101813 - MGP_AJ_P0040782 Zfp706 protein_coding protein_coding MGP_AJ_T0040430.1 MGP_AJ_G0021646.1 mouse_genomes_project 15 1268001 1413462 + MGP_AJ_P0040430 Plcxd3 protein_coding nonsense_mediated_decay MGP_AJ_T0040431.1 MGP_AJ_G0021646.1 mouse_genomes_project 15 1268014 1469743 + MGP_AJ_P0040431 Plcxd3 protein_coding protein_coding MGP_AJ_T0042662.1 MGP_AJ_G0022339.1 mouse_genomes_project 15 99506655 99514441 - MGP_AJ_P0042662 Krt84 protein_coding protein_coding MGP_AJ_T0042102.1 MGP_AJ_G0022167.1 mouse_genomes_project 15 86530024 86538988 - Alg12 protein_coding retained_intron MGP_AJ_T0042103.1 MGP_AJ_G0022167.1 mouse_genomes_project 15 86530024 86542924 - MGP_AJ_P0042103 Alg12 protein_coding protein_coding MGP_AJ_T0042104.1 MGP_AJ_G0022167.1 mouse_genomes_project 15 86530025 86542891 - MGP_AJ_P0042104 Alg12 protein_coding protein_coding MGP_AJ_T0042105.1 MGP_AJ_G0022167.1 mouse_genomes_project 15 86537424 86542698 - MGP_AJ_P0042105 Alg12 protein_coding protein_coding MGP_AJ_T0013088.1 MGP_AJ_G0011183.1 mouse_genomes_project 15 62045847 62046159 + processed_pseudogene processed_pseudogene MGP_AJ_T0099580.1 MGP_AJ_G0037546.1 mouse_genomes_project 15 97176547 97176654 - Gm22951 snRNA snRNA MGP_AJ_T0013103.1 MGP_AJ_G0011198.1 mouse_genomes_project 15 82762931 82763349 + processed_pseudogene processed_pseudogene MGP_AJ_T0042084.1 MGP_AJ_G0022160.1 mouse_genomes_project 15 83736514 83819268 + MGP_AJ_P0042084 Gramd4 protein_coding protein_coding MGP_AJ_T0042085.1 MGP_AJ_G0022160.1 mouse_genomes_project 15 83737546 83819252 + MGP_AJ_P0042085 Gramd4 protein_coding protein_coding MGP_AJ_T0042086.1 MGP_AJ_G0022160.1 mouse_genomes_project 15 83737691 83819265 + MGP_AJ_P0042086 Gramd4 protein_coding nonsense_mediated_decay MGP_AJ_T0042087.1 MGP_AJ_G0022160.1 mouse_genomes_project 15 83747597 83803744 + Gramd4 protein_coding processed_transcript MGP_AJ_T0042088.1 MGP_AJ_G0022160.1 mouse_genomes_project 15 83754480 83771318 + Gramd4 protein_coding processed_transcript MGP_AJ_T0042788.1 MGP_AJ_G0022384.1 mouse_genomes_project 15 100735567 100743846 - MGP_AJ_P0042788 Atp5g2 protein_coding protein_coding MGP_AJ_T0042789.1 MGP_AJ_G0022384.1 mouse_genomes_project 15 100735717 100740462 - MGP_AJ_P0042789 Atp5g2 protein_coding protein_coding MGP_AJ_T0042790.1 MGP_AJ_G0022384.1 mouse_genomes_project 15 100737458 100740456 - MGP_AJ_P0042790 Atp5g2 protein_coding protein_coding MGP_AJ_T0042791.1 MGP_AJ_G0022384.1 mouse_genomes_project 15 100738520 100745072 - MGP_AJ_P0042791 Atp5g2 protein_coding protein_coding MGP_AJ_T0100818.1 MGP_AJ_G0038784.1 mouse_genomes_project 15 17950653 17950781 + Gm25711 snoRNA snoRNA MGP_AJ_T0040677.1 MGP_AJ_G0021721.1 mouse_genomes_project 15 27229467 28073769 + MGP_AJ_P0040677 Ctnnd2 protein_coding protein_coding MGP_AJ_T0041970.1 MGP_AJ_G0022121.1 mouse_genomes_project 15 80916606 80969685 - MGP_AJ_P0041970 Arfgap3 protein_coding protein_coding MGP_AJ_T0041971.1 MGP_AJ_G0022121.1 mouse_genomes_project 15 80917551 80969587 - MGP_AJ_P0041971 Arfgap3 protein_coding unknown_likely_coding MGP_AJ_T0102351.1 MGP_AJ_G0040093.1 mouse_genomes_project 15 72604143 72606296 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0010078.1 MGP_AJ_G0008200.1 mouse_genomes_project 15 81801839 81801947 + Mir6392 miRNA miRNA MGP_AJ_T0040403.1 MGP_AJ_G0021640.1 mouse_genomes_project 15 129622 137922 + MGP_AJ_P0040403 protein_coding protein_coding MGP_AJ_T0040404.1 MGP_AJ_G0021640.1 mouse_genomes_project 15 131842 142648 + MGP_AJ_P0040404 protein_coding protein_coding MGP_AJ_T0040405.1 MGP_AJ_G0021640.1 mouse_genomes_project 15 131886 137875 + MGP_AJ_P0040405 protein_coding protein_coding MGP_AJ_T0040406.1 MGP_AJ_G0021640.1 mouse_genomes_project 15 131996 142647 + MGP_AJ_P0040406 protein_coding protein_coding MGP_AJ_T0040407.1 MGP_AJ_G0021640.1 mouse_genomes_project 15 132073 137804 + MGP_AJ_P0040407 protein_coding protein_coding MGP_AJ_T0040408.1 MGP_AJ_G0021640.1 mouse_genomes_project 15 132074 137262 + protein_coding retained_intron MGP_AJ_T0040409.1 MGP_AJ_G0021640.1 mouse_genomes_project 15 134225 139411 + MGP_AJ_P0040409 protein_coding protein_coding MGP_AJ_T0041489.1 MGP_AJ_G0021976.1 mouse_genomes_project 15 74238332 74240540 + MGP_AJ_P0041489 1110038F14Rik protein_coding protein_coding MGP_AJ_T0006812.1 MGP_AJ_G0005609.1 mouse_genomes_project 15 96595500 96604530 + B130046B21Rik lincRNA lincRNA MGP_AJ_T0040728.1 MGP_AJ_G0021741.1 mouse_genomes_project 15 31515184 31535828 + MGP_AJ_P0040728 Erich5 protein_coding protein_coding MGP_AJ_T0000945.1 MGP_AJ_G0000879.1 mouse_genomes_project 15 101138908 101139935 - TEC TEC MGP_AJ_T0100833.1 MGP_AJ_G0038799.1 mouse_genomes_project 15 41316400 41316526 + Gm24903 snoRNA snoRNA MGP_AJ_T0013089.1 MGP_AJ_G0011184.1 mouse_genomes_project 15 65879506 65879779 + processed_pseudogene processed_pseudogene MGP_AJ_T0041884.1 MGP_AJ_G0022091.1 mouse_genomes_project 15 79557431 79581222 - MGP_AJ_P0041884 Desi1 protein_coding nonsense_mediated_decay MGP_AJ_T0041885.1 MGP_AJ_G0022091.1 mouse_genomes_project 15 79557431 79581232 - MGP_AJ_P0041885 Desi1 protein_coding protein_coding MGP_AJ_T0041886.1 MGP_AJ_G0022091.1 mouse_genomes_project 15 79558755 79581294 - MGP_AJ_P0041886 Desi1 protein_coding nonsense_mediated_decay MGP_AJ_T0041887.1 MGP_AJ_G0022091.1 mouse_genomes_project 15 79559553 79598504 - Desi1 protein_coding processed_transcript MGP_AJ_T0041888.1 MGP_AJ_G0022091.1 mouse_genomes_project 15 79559566 79581080 - MGP_AJ_P0041888 Desi1 protein_coding nonsense_mediated_decay MGP_AJ_T0041889.1 MGP_AJ_G0022091.1 mouse_genomes_project 15 79559629 79581106 - MGP_AJ_P0041889 Desi1 protein_coding nonsense_mediated_decay MGP_AJ_T0040974.1 MGP_AJ_G0021829.1 mouse_genomes_project 15 55053732 55071544 + MGP_AJ_P0040974 Wdyhv1 protein_coding protein_coding MGP_AJ_T0003619.1 MGP_AJ_G0003274.1 mouse_genomes_project 15 80498628 80505363 + Gm20324 antisense antisense MGP_AJ_T0041870.1 MGP_AJ_G0022086.1 mouse_genomes_project 15 79479170 79490413 - MGP_AJ_P0041870 Polr3h protein_coding protein_coding MGP_AJ_T0101732.1 MGP_AJ_G0039668.1 mouse_genomes_project 15 56248683 56253851 + transcribed_processed_pseudogene processed_transcript MGP_AJ_T0101733.1 MGP_AJ_G0039668.1 mouse_genomes_project 15 56252690 56253768 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0041211.1 MGP_AJ_G0021908.1 mouse_genomes_project 15 72512695 72516550 + MGP_AJ_P0041211 protein_coding protein_coding MGP_AJ_T0041217.1 MGP_AJ_G0021908.1 mouse_genomes_project 15 72512728 72516265 + MGP_AJ_P0041217 protein_coding protein_coding MGP_AJ_T0041218.1 MGP_AJ_G0021908.1 mouse_genomes_project 15 72512862 72516553 + protein_coding retained_intron MGP_AJ_T0041220.1 MGP_AJ_G0021908.1 mouse_genomes_project 15 72512979 72516379 + MGP_AJ_P0041220 protein_coding protein_coding MGP_AJ_T0017470.1 MGP_AJ_G0015280.1 mouse_genomes_project 15 77263458 77265683 + Gm16575 processed_transcript processed_transcript MGP_AJ_T0040608.1 MGP_AJ_G0021697.1 mouse_genomes_project 15 9253340 9283151 + MGP_AJ_P0040608 Golph3 protein_coding protein_coding MGP_AJ_T0041864.1 MGP_AJ_G0022085.1 mouse_genomes_project 15 79436133 79479274 + MGP_AJ_P0041864 Aco2 protein_coding protein_coding MGP_AJ_T0041865.1 MGP_AJ_G0022085.1 mouse_genomes_project 15 79436308 79453869 + Aco2 protein_coding retained_intron MGP_AJ_T0041866.1 MGP_AJ_G0022085.1 mouse_genomes_project 15 79436308 79453870 + Aco2 protein_coding processed_transcript MGP_AJ_T0041867.1 MGP_AJ_G0022085.1 mouse_genomes_project 15 79471202 79474652 + Aco2 protein_coding retained_intron MGP_AJ_T0041868.1 MGP_AJ_G0022085.1 mouse_genomes_project 15 79471482 79474306 + Aco2 protein_coding retained_intron MGP_AJ_T0041869.1 MGP_AJ_G0022085.1 mouse_genomes_project 15 79474431 79477434 + Aco2 protein_coding retained_intron MGP_AJ_T0102348.1 MGP_AJ_G0040090.1 mouse_genomes_project 15 72545237 72549506 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0011391.1 MGP_AJ_G0009513.1 mouse_genomes_project 15 73553694 73553979 - Mirt2 misc_RNA misc_RNA MGP_AJ_T0041998.1 MGP_AJ_G0022130.1 mouse_genomes_project 15 81497275 81697223 - MGP_AJ_P0041998 Efcab6 protein_coding unknown_likely_coding MGP_AJ_T0041999.1 MGP_AJ_G0022130.1 mouse_genomes_project 15 81497281 81697224 - MGP_AJ_P0041999 Efcab6 protein_coding protein_coding MGP_AJ_T0042000.1 MGP_AJ_G0022130.1 mouse_genomes_project 15 81497283 81550388 - Efcab6 protein_coding processed_transcript MGP_AJ_T0042001.1 MGP_AJ_G0022130.1 mouse_genomes_project 15 81497336 81566772 - Efcab6 protein_coding retained_intron MGP_AJ_T0042002.1 MGP_AJ_G0022130.1 mouse_genomes_project 15 81502941 81514183 - Efcab6 protein_coding processed_transcript MGP_AJ_T0042003.1 MGP_AJ_G0022130.1 mouse_genomes_project 15 81555945 81577277 - MGP_AJ_P0042003 Efcab6 protein_coding nonsense_mediated_decay MGP_AJ_T0042004.1 MGP_AJ_G0022130.1 mouse_genomes_project 15 81595877 81598522 - Efcab6 protein_coding processed_transcript MGP_AJ_T0042005.1 MGP_AJ_G0022130.1 mouse_genomes_project 15 81603162 81619657 - Efcab6 protein_coding processed_transcript MGP_AJ_T0042006.1 MGP_AJ_G0022130.1 mouse_genomes_project 15 81650890 81697254 - Efcab6 protein_coding processed_transcript MGP_AJ_T0042818.1 MGP_AJ_G0022398.1 mouse_genomes_project 15 101331717 101338896 - MGP_AJ_P0042818 Nfe2 protein_coding protein_coding MGP_AJ_T0042819.1 MGP_AJ_G0022398.1 mouse_genomes_project 15 101331722 101334935 - MGP_AJ_P0042819 Nfe2 protein_coding protein_coding MGP_AJ_T0042820.1 MGP_AJ_G0022398.1 mouse_genomes_project 15 101331722 101334986 - MGP_AJ_P0042820 Nfe2 protein_coding protein_coding MGP_AJ_T0042821.1 MGP_AJ_G0022398.1 mouse_genomes_project 15 101331725 101335146 - MGP_AJ_P0042821 Nfe2 protein_coding protein_coding MGP_AJ_T0042822.1 MGP_AJ_G0022398.1 mouse_genomes_project 15 101331780 101334985 - MGP_AJ_P0042822 Nfe2 protein_coding protein_coding MGP_AJ_T0042823.1 MGP_AJ_G0022398.1 mouse_genomes_project 15 101332458 101336622 - MGP_AJ_P0042823 Nfe2 protein_coding protein_coding MGP_AJ_T0042824.1 MGP_AJ_G0022398.1 mouse_genomes_project 15 101332510 101337519 - MGP_AJ_P0042824 Nfe2 protein_coding protein_coding MGP_AJ_T0042825.1 MGP_AJ_G0022398.1 mouse_genomes_project 15 101332572 101335157 - MGP_AJ_P0042825 Nfe2 protein_coding protein_coding MGP_AJ_T0042826.1 MGP_AJ_G0022398.1 mouse_genomes_project 15 101332742 101336280 - MGP_AJ_P0042826 Nfe2 protein_coding protein_coding MGP_AJ_T0042827.1 MGP_AJ_G0022398.1 mouse_genomes_project 15 101332852 101341842 - MGP_AJ_P0042827 Nfe2 protein_coding protein_coding MGP_AJ_T0041446.1 MGP_AJ_G0021964.1 mouse_genomes_project 15 73958745 73978129 + protein_coding processed_transcript MGP_AJ_T0041447.1 MGP_AJ_G0021964.1 mouse_genomes_project 15 73958765 73983733 + MGP_AJ_P0041447 protein_coding unknown_likely_coding MGP_AJ_T0041448.1 MGP_AJ_G0021964.1 mouse_genomes_project 15 73976500 73977676 + protein_coding processed_transcript MGP_AJ_T0041449.1 MGP_AJ_G0021964.1 mouse_genomes_project 15 73977726 73982235 + protein_coding retained_intron MGP_AJ_T0041450.1 MGP_AJ_G0021964.1 mouse_genomes_project 15 73977848 73982231 + MGP_AJ_P0041450 protein_coding nonsense_mediated_decay MGP_AJ_T0041451.1 MGP_AJ_G0021964.1 mouse_genomes_project 15 73978752 73980665 + protein_coding retained_intron MGP_AJ_T0041452.1 MGP_AJ_G0021964.1 mouse_genomes_project 15 73978767 73980829 + MGP_AJ_P0041452 protein_coding nonsense_mediated_decay MGP_AJ_T0041453.1 MGP_AJ_G0021964.1 mouse_genomes_project 15 73979010 73979809 + protein_coding retained_intron MGP_AJ_T0041454.1 MGP_AJ_G0021964.1 mouse_genomes_project 15 73980123 73982235 + protein_coding retained_intron MGP_AJ_T0041455.1 MGP_AJ_G0021964.1 mouse_genomes_project 15 73980232 73982235 + protein_coding retained_intron MGP_AJ_T0040812.1 MGP_AJ_G0021766.1 mouse_genomes_project 15 35303191 35310713 + MGP_AJ_P0040812 Odf1 protein_coding protein_coding MGP_AJ_T0041552.1 MGP_AJ_G0021999.1 mouse_genomes_project 15 75716239 75742306 - MGP_AJ_P0041552 protein_coding protein_coding MGP_AJ_T0017466.1 MGP_AJ_G0015276.1 mouse_genomes_project 15 74682675 74683353 - Gm20688 processed_transcript processed_transcript MGP_AJ_T0003592.1 MGP_AJ_G0003254.1 mouse_genomes_project 15 3222444 3229114 - Gm16311 antisense antisense MGP_AJ_T0041968.1 MGP_AJ_G0022120.1 mouse_genomes_project 15 80838390 80863675 - MGP_AJ_P0041968 A4galt protein_coding protein_coding MGP_AJ_T0041969.1 MGP_AJ_G0022120.1 mouse_genomes_project 15 80838390 80863632 - MGP_AJ_P0041969 A4galt protein_coding protein_coding MGP_AJ_T0102343.1 MGP_AJ_G0040085.1 mouse_genomes_project 15 72085243 72085394 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0041755.1 MGP_AJ_G0022055.1 mouse_genomes_project 15 77665138 77694192 + MGP_AJ_P0041755 Tab1 protein_coding protein_coding MGP_AJ_T0011399.1 MGP_AJ_G0009521.1 mouse_genomes_project 15 101024108 101024177 + Gm27337 misc_RNA misc_RNA MGP_AJ_T0017461.1 MGP_AJ_G0015273.1 mouse_genomes_project 15 63981741 64019222 + Gm2895 processed_transcript processed_transcript MGP_AJ_T0041206.1 MGP_AJ_G0021905.1 mouse_genomes_project 15 72460580 72466146 + MGP_AJ_P0041206 BC025446 protein_coding protein_coding MGP_AJ_T0041207.1 MGP_AJ_G0021905.1 mouse_genomes_project 15 72460800 72466859 + MGP_AJ_P0041207 BC025446 protein_coding protein_coding MGP_AJ_T0041543.1 MGP_AJ_G0021996.1 mouse_genomes_project 15 75592222 75606854 - MGP_AJ_P0041543 Ift27 protein_coding protein_coding MGP_AJ_T0010075.1 MGP_AJ_G0008197.1 mouse_genomes_project 15 80379788 80379874 + Gm25990 miRNA miRNA MGP_AJ_T0006799.1 MGP_AJ_G0005601.1 mouse_genomes_project 15 83246176 83258745 + AU022754 lincRNA lincRNA MGP_AJ_T0041541.1 MGP_AJ_G0021994.1 mouse_genomes_project 15 75390781 75402608 - MGP_AJ_P0041541 Eif3d protein_coding protein_coding MGP_AJ_T0040703.1 MGP_AJ_G0021732.1 mouse_genomes_project 15 29317671 29767095 + MGP_AJ_P0040703 Sema5a protein_coding protein_coding MGP_AJ_T0098601.1 MGP_AJ_G0036585.1 mouse_genomes_project 15 89277075 89277188 - Gm24647 rRNA rRNA MGP_AJ_T0017460.1 MGP_AJ_G0015272.1 mouse_genomes_project 15 62858642 62859130 + Gm20405 processed_transcript processed_transcript MGP_AJ_T0041168.1 MGP_AJ_G0021892.1 mouse_genomes_project 15 71848208 71851925 - MGP_AJ_P0041168 Slurp1 protein_coding protein_coding MGP_AJ_T0041169.1 MGP_AJ_G0021892.1 mouse_genomes_project 15 71850554 71851905 - MGP_AJ_P0041169 Slurp1 protein_coding protein_coding MGP_AJ_T0041473.1 MGP_AJ_G0021970.1 mouse_genomes_project 15 74011135 74104823 - MGP_AJ_P0041473 Arhgap39 protein_coding protein_coding MGP_AJ_T0041474.1 MGP_AJ_G0021970.1 mouse_genomes_project 15 74011135 74104910 - MGP_AJ_P0041474 Arhgap39 protein_coding protein_coding MGP_AJ_T0041475.1 MGP_AJ_G0021970.1 mouse_genomes_project 15 74012010 74012754 - Arhgap39 protein_coding retained_intron MGP_AJ_T0041476.1 MGP_AJ_G0021970.1 mouse_genomes_project 15 74020573 74104869 - Arhgap39 protein_coding retained_intron MGP_AJ_T0041477.1 MGP_AJ_G0021970.1 mouse_genomes_project 15 74038733 74081914 - MGP_AJ_P0041477 Arhgap39 protein_coding protein_coding MGP_AJ_T0041478.1 MGP_AJ_G0021970.1 mouse_genomes_project 15 74045097 74104846 - MGP_AJ_P0041478 Arhgap39 protein_coding protein_coding MGP_AJ_T0041479.1 MGP_AJ_G0021970.1 mouse_genomes_project 15 74045101 74104736 - MGP_AJ_P0041479 Arhgap39 protein_coding protein_coding MGP_AJ_T0041480.1 MGP_AJ_G0021970.1 mouse_genomes_project 15 74052156 74104881 - Arhgap39 protein_coding retained_intron MGP_AJ_T0041481.1 MGP_AJ_G0021970.1 mouse_genomes_project 15 74052605 74104710 - MGP_AJ_P0041481 Arhgap39 protein_coding protein_coding MGP_AJ_T0041482.1 MGP_AJ_G0021970.1 mouse_genomes_project 15 74052621 74104816 - MGP_AJ_P0041482 Arhgap39 protein_coding protein_coding MGP_AJ_T0042511.1 MGP_AJ_G0022291.1 mouse_genomes_project 15 97308834 97339827 - MGP_AJ_P0042511 Faim2 protein_coding protein_coding MGP_AJ_T0013068.1 MGP_AJ_G0011163.1 mouse_genomes_project 15 22788387 22788715 + processed_pseudogene processed_pseudogene MGP_AJ_T0100814.1 MGP_AJ_G0038780.1 mouse_genomes_project 15 3071855 3071987 - Gm23139 snoRNA snoRNA MGP_AJ_T0098923.1 MGP_AJ_G0036903.1 mouse_genomes_project 15 69914973 69919687 - Peg13 sense_intronic sense_intronic MGP_AJ_T0041187.1 MGP_AJ_G0021902.1 mouse_genomes_project 15 72090722 72096222 + MGP_AJ_P0041187 Ly6e protein_coding protein_coding MGP_AJ_T0041188.1 MGP_AJ_G0021902.1 mouse_genomes_project 15 72090722 72096220 + MGP_AJ_P0041188 Ly6e protein_coding protein_coding MGP_AJ_T0041189.1 MGP_AJ_G0021902.1 mouse_genomes_project 15 72090742 72096222 + MGP_AJ_P0041189 Ly6e protein_coding protein_coding MGP_AJ_T0041190.1 MGP_AJ_G0021902.1 mouse_genomes_project 15 72090776 72095093 + MGP_AJ_P0041190 Ly6e protein_coding protein_coding MGP_AJ_T0041191.1 MGP_AJ_G0021902.1 mouse_genomes_project 15 72090812 72094706 + MGP_AJ_P0041191 Ly6e protein_coding protein_coding MGP_AJ_T0041192.1 MGP_AJ_G0021902.1 mouse_genomes_project 15 72090834 72095073 + MGP_AJ_P0041192 Ly6e protein_coding protein_coding MGP_AJ_T0041193.1 MGP_AJ_G0021902.1 mouse_genomes_project 15 72090848 72094972 + MGP_AJ_P0041193 Ly6e protein_coding protein_coding MGP_AJ_T0041194.1 MGP_AJ_G0021902.1 mouse_genomes_project 15 72090856 72095044 + MGP_AJ_P0041194 Ly6e protein_coding protein_coding MGP_AJ_T0041195.1 MGP_AJ_G0021902.1 mouse_genomes_project 15 72090911 72094910 + MGP_AJ_P0041195 Ly6e protein_coding protein_coding MGP_AJ_T0041196.1 MGP_AJ_G0021902.1 mouse_genomes_project 15 72090930 72094977 + MGP_AJ_P0041196 Ly6e protein_coding protein_coding MGP_AJ_T0041197.1 MGP_AJ_G0021902.1 mouse_genomes_project 15 72091323 72095648 + MGP_AJ_P0041197 Ly6e protein_coding protein_coding MGP_AJ_T0041198.1 MGP_AJ_G0021902.1 mouse_genomes_project 15 72091336 72095346 + Ly6e protein_coding retained_intron MGP_AJ_T0041199.1 MGP_AJ_G0021902.1 mouse_genomes_project 15 72091338 72095648 + Ly6e protein_coding retained_intron MGP_AJ_T0041200.1 MGP_AJ_G0021902.1 mouse_genomes_project 15 72091342 72094927 + MGP_AJ_P0041200 Ly6e protein_coding protein_coding MGP_AJ_T0041201.1 MGP_AJ_G0021902.1 mouse_genomes_project 15 72091353 72092168 + Ly6e protein_coding retained_intron MGP_AJ_T0041202.1 MGP_AJ_G0021902.1 mouse_genomes_project 15 72092227 72095143 + MGP_AJ_P0041202 Ly6e protein_coding protein_coding MGP_AJ_T0013070.1 MGP_AJ_G0011165.1 mouse_genomes_project 15 33869495 33887889 - processed_pseudogene processed_pseudogene MGP_AJ_T0042201.1 MGP_AJ_G0022193.1 mouse_genomes_project 15 87146134 87160207 - Chkb protein_coding retained_intron MGP_AJ_T0042206.1 MGP_AJ_G0022193.1 mouse_genomes_project 15 87156870 87160371 - Chkb protein_coding retained_intron MGP_AJ_T0042207.1 MGP_AJ_G0022193.1 mouse_genomes_project 15 87156870 87157672 - Chkb protein_coding processed_transcript MGP_AJ_T0042208.1 MGP_AJ_G0022193.1 mouse_genomes_project 15 87156877 87159950 - Chkb protein_coding retained_intron MGP_AJ_T0042209.1 MGP_AJ_G0022193.1 mouse_genomes_project 15 87156877 87160410 - MGP_AJ_P0042209 Chkb protein_coding protein_coding MGP_AJ_T0042210.1 MGP_AJ_G0022193.1 mouse_genomes_project 15 87156951 87159004 - MGP_AJ_P0042210 Chkb protein_coding nonsense_mediated_decay MGP_AJ_T0042211.1 MGP_AJ_G0022193.1 mouse_genomes_project 15 87156978 87157670 - Chkb protein_coding retained_intron MGP_AJ_T0042212.1 MGP_AJ_G0022193.1 mouse_genomes_project 15 87157625 87160419 - Chkb protein_coding retained_intron MGP_AJ_T0042213.1 MGP_AJ_G0022193.1 mouse_genomes_project 15 87157890 87159941 - Chkb protein_coding retained_intron MGP_AJ_T0042214.1 MGP_AJ_G0022193.1 mouse_genomes_project 15 87158145 87159604 - MGP_AJ_P0042214 Chkb protein_coding protein_coding MGP_AJ_T0010100.1 MGP_AJ_G0008222.1 mouse_genomes_project 15 100744511 100744586 - Mir688 miRNA miRNA MGP_AJ_T0040424.1 MGP_AJ_G0021644.1 mouse_genomes_project 15 875889 889707 - MGP_AJ_P0040424 AW549877 protein_coding protein_coding MGP_AJ_T0042313.1 MGP_AJ_G0022222.1 mouse_genomes_project 15 92959015 93267051 - MGP_AJ_P0042313 Nell2 protein_coding protein_coding MGP_AJ_T0042314.1 MGP_AJ_G0022222.1 mouse_genomes_project 15 92959493 93266597 - MGP_AJ_P0042314 Nell2 protein_coding protein_coding MGP_AJ_T0041625.1 MGP_AJ_G0022026.1 mouse_genomes_project 15 76645377 76650956 - 1700088E04Rik protein_coding processed_transcript MGP_AJ_T0041626.1 MGP_AJ_G0022026.1 mouse_genomes_project 15 76650694 76657275 - MGP_AJ_P0041626 1700088E04Rik protein_coding protein_coding MGP_AJ_T0041627.1 MGP_AJ_G0022026.1 mouse_genomes_project 15 76650694 76657223 - MGP_AJ_P0041627 1700088E04Rik protein_coding protein_coding MGP_AJ_T0041628.1 MGP_AJ_G0022026.1 mouse_genomes_project 15 76650700 76657289 - MGP_AJ_P0041628 1700088E04Rik protein_coding protein_coding MGP_AJ_T0041629.1 MGP_AJ_G0022026.1 mouse_genomes_project 15 76651031 76657266 - MGP_AJ_P0041629 1700088E04Rik protein_coding protein_coding MGP_AJ_T0041630.1 MGP_AJ_G0022026.1 mouse_genomes_project 15 76651048 76652757 - 1700088E04Rik protein_coding processed_transcript MGP_AJ_T0041631.1 MGP_AJ_G0022026.1 mouse_genomes_project 15 76651056 76657270 - MGP_AJ_P0041631 1700088E04Rik protein_coding protein_coding MGP_AJ_T0041632.1 MGP_AJ_G0022026.1 mouse_genomes_project 15 76651095 76657241 - MGP_AJ_P0041632 1700088E04Rik protein_coding protein_coding MGP_AJ_T0041633.1 MGP_AJ_G0022026.1 mouse_genomes_project 15 76651121 76657218 - MGP_AJ_P0041633 1700088E04Rik protein_coding nonsense_mediated_decay MGP_AJ_T0041634.1 MGP_AJ_G0022026.1 mouse_genomes_project 15 76653179 76657239 - MGP_AJ_P0041634 1700088E04Rik protein_coding nonsense_mediated_decay MGP_AJ_T0041635.1 MGP_AJ_G0022026.1 mouse_genomes_project 15 76653467 76655319 - MGP_AJ_P0041635 1700088E04Rik protein_coding protein_coding MGP_AJ_T0041636.1 MGP_AJ_G0022026.1 mouse_genomes_project 15 76653470 76657289 - MGP_AJ_P0041636 1700088E04Rik protein_coding protein_coding MGP_AJ_T0041637.1 MGP_AJ_G0022026.1 mouse_genomes_project 15 76653472 76657014 - MGP_AJ_P0041637 1700088E04Rik protein_coding protein_coding MGP_AJ_T0040673.1 MGP_AJ_G0021718.1 mouse_genomes_project 15 24741659 24768158 - MGP_AJ_P0040673 Fam105a protein_coding protein_coding MGP_AJ_T0040674.1 MGP_AJ_G0021718.1 mouse_genomes_project 15 24742851 24768067 - MGP_AJ_P0040674 Fam105a protein_coding unknown_likely_coding MGP_AJ_T0041323.1 MGP_AJ_G0021936.1 mouse_genomes_project 15 73516018 73518568 - MGP_AJ_P0041323 Parp10 protein_coding nonsense_mediated_decay MGP_AJ_T0041324.1 MGP_AJ_G0021936.1 mouse_genomes_project 15 73517847 73530009 - Parp10 protein_coding retained_intron MGP_AJ_T0041325.1 MGP_AJ_G0021936.1 mouse_genomes_project 15 73517847 73529995 - MGP_AJ_P0041325 Parp10 protein_coding protein_coding MGP_AJ_T0041326.1 MGP_AJ_G0021936.1 mouse_genomes_project 15 73517847 73530016 - MGP_AJ_P0041326 Parp10 protein_coding protein_coding MGP_AJ_T0041327.1 MGP_AJ_G0021936.1 mouse_genomes_project 15 73518234 73519098 - Parp10 protein_coding processed_transcript MGP_AJ_T0041328.1 MGP_AJ_G0021936.1 mouse_genomes_project 15 73518583 73519318 - Parp10 protein_coding retained_intron MGP_AJ_T0042752.1 MGP_AJ_G0022379.1 mouse_genomes_project 15 100568260 100568425 + MGP_AJ_P0042752 Gm10337 protein_coding protein_coding MGP_AJ_T0006758.1 MGP_AJ_G0005576.1 mouse_genomes_project 15 35329014 35330814 - Gm8705 lincRNA lincRNA MGP_AJ_T0006787.1 MGP_AJ_G0005593.1 mouse_genomes_project 15 75393457 75398910 + Gm17638 lincRNA lincRNA MGP_AJ_T0011393.1 MGP_AJ_G0009515.1 mouse_genomes_project 15 83831121 83831389 + Gm24011 misc_RNA misc_RNA MGP_AJ_T0011398.1 MGP_AJ_G0009520.1 mouse_genomes_project 15 100548740 100548922 + Gm27406 misc_RNA misc_RNA MGP_AJ_T0042530.1 MGP_AJ_G0022296.1 mouse_genomes_project 15 97485711 97516100 + MGP_AJ_P0042530 Asic1 protein_coding protein_coding MGP_AJ_T0010083.1 MGP_AJ_G0008205.1 mouse_genomes_project 15 85491543 85491637 - Mir6393 miRNA miRNA MGP_AJ_T0042324.1 MGP_AJ_G0022228.1 mouse_genomes_project 15 94160935 94209661 - MGP_AJ_P0042324 Scaf11 protein_coding unknown_likely_coding MGP_AJ_T0042325.1 MGP_AJ_G0022228.1 mouse_genomes_project 15 94160937 94209723 - MGP_AJ_P0042325 Scaf11 protein_coding protein_coding MGP_AJ_T0041849.1 MGP_AJ_G0022080.1 mouse_genomes_project 15 79301114 79359438 + MGP_AJ_P0041849 Zc3h7b protein_coding protein_coding MGP_AJ_T0041584.1 MGP_AJ_G0022013.1 mouse_genomes_project 15 76278500 76305689 - MGP_AJ_P0041584 Card10 protein_coding protein_coding MGP_AJ_T0041585.1 MGP_AJ_G0022013.1 mouse_genomes_project 15 76279349 76305316 - MGP_AJ_P0041585 Card10 protein_coding protein_coding MGP_AJ_T0041586.1 MGP_AJ_G0022013.1 mouse_genomes_project 15 76290147 76293230 - Card10 protein_coding processed_transcript MGP_AJ_T0041616.1 MGP_AJ_G0022023.1 mouse_genomes_project 15 76568946 76578738 - MGP_AJ_P0041616 Ankrd54 protein_coding protein_coding MGP_AJ_T0041617.1 MGP_AJ_G0022023.1 mouse_genomes_project 15 76568956 76578738 - Ankrd54 protein_coding retained_intron MGP_AJ_T0041618.1 MGP_AJ_G0022023.1 mouse_genomes_project 15 76569426 76571266 - MGP_AJ_P0041618 Ankrd54 protein_coding protein_coding MGP_AJ_T0041619.1 MGP_AJ_G0022023.1 mouse_genomes_project 15 76569620 76571197 - MGP_AJ_P0041619 Ankrd54 protein_coding protein_coding MGP_AJ_T0041620.1 MGP_AJ_G0022023.1 mouse_genomes_project 15 76571238 76578735 - MGP_AJ_P0041620 Ankrd54 protein_coding protein_coding MGP_AJ_T0041621.1 MGP_AJ_G0022023.1 mouse_genomes_project 15 76571267 76578689 - MGP_AJ_P0041621 Ankrd54 protein_coding nonsense_mediated_decay MGP_AJ_T0041622.1 MGP_AJ_G0022023.1 mouse_genomes_project 15 76575473 76578746 - Ankrd54 protein_coding retained_intron MGP_AJ_T0010069.1 MGP_AJ_G0008191.1 mouse_genomes_project 15 79991372 79991432 - Gm27331 miRNA miRNA MGP_AJ_T0003620.1 MGP_AJ_G0003275.1 mouse_genomes_project 15 80706568 80710414 - Gm17206 antisense antisense MGP_AJ_T0040740.1 MGP_AJ_G0021745.1 mouse_genomes_project 15 31916528 31921485 + MGP_AJ_P0040740 Kcns2 protein_coding protein_coding MGP_AJ_T0042329.1 MGP_AJ_G0022230.1 mouse_genomes_project 15 94434114 94446396 - MGP_AJ_P0042329 Slc38a2 protein_coding protein_coding MGP_AJ_T0040585.1 MGP_AJ_G0021688.1 mouse_genomes_project 15 7928328 7956790 + MGP_AJ_P0040585 Slc45a2 protein_coding protein_coding MGP_AJ_T0041459.1 MGP_AJ_G0021968.1 mouse_genomes_project 15 73997677 74000628 + MGP_AJ_P0041459 Lrrc14 protein_coding protein_coding MGP_AJ_T0041460.1 MGP_AJ_G0021968.1 mouse_genomes_project 15 73997692 74004756 + MGP_AJ_P0041460 Lrrc14 protein_coding protein_coding MGP_AJ_T0041461.1 MGP_AJ_G0021968.1 mouse_genomes_project 15 73997693 74002093 + MGP_AJ_P0041461 Lrrc14 protein_coding protein_coding MGP_AJ_T0041462.1 MGP_AJ_G0021968.1 mouse_genomes_project 15 73997697 74002142 + MGP_AJ_P0041462 Lrrc14 protein_coding protein_coding MGP_AJ_T0041463.1 MGP_AJ_G0021968.1 mouse_genomes_project 15 73997697 74002110 + MGP_AJ_P0041463 Lrrc14 protein_coding nonsense_mediated_decay MGP_AJ_T0041464.1 MGP_AJ_G0021968.1 mouse_genomes_project 15 73997703 73999981 + MGP_AJ_P0041464 Lrrc14 protein_coding protein_coding MGP_AJ_T0041465.1 MGP_AJ_G0021968.1 mouse_genomes_project 15 73997717 74002188 + Lrrc14 protein_coding retained_intron MGP_AJ_T0041466.1 MGP_AJ_G0021968.1 mouse_genomes_project 15 73997727 74003706 + Lrrc14 protein_coding retained_intron MGP_AJ_T0041467.1 MGP_AJ_G0021968.1 mouse_genomes_project 15 73997727 74001807 + Lrrc14 protein_coding processed_transcript MGP_AJ_T0041468.1 MGP_AJ_G0021968.1 mouse_genomes_project 15 73997785 74002149 + MGP_AJ_P0041468 Lrrc14 protein_coding protein_coding MGP_AJ_T0042151.1 MGP_AJ_G0022180.1 mouse_genomes_project 15 86880230 86905373 - MGP_AJ_P0042151 Plxnb2 protein_coding unknown_likely_coding MGP_AJ_T0042152.1 MGP_AJ_G0022180.1 mouse_genomes_project 15 86880234 86881265 - Plxnb2 protein_coding processed_transcript MGP_AJ_T0042153.1 MGP_AJ_G0022180.1 mouse_genomes_project 15 86880666 86881930 - Plxnb2 protein_coding processed_transcript MGP_AJ_T0042154.1 MGP_AJ_G0022180.1 mouse_genomes_project 15 86885710 86886247 - Plxnb2 protein_coding processed_transcript MGP_AJ_T0042155.1 MGP_AJ_G0022180.1 mouse_genomes_project 15 86889590 86890497 - Plxnb2 protein_coding processed_transcript MGP_AJ_T0042393.1 MGP_AJ_G0022246.1 mouse_genomes_project 15 95910416 95912745 + MGP_AJ_P0042393 Ccdc184 protein_coding protein_coding MGP_AJ_T0102345.1 MGP_AJ_G0040087.1 mouse_genomes_project 15 72440486 72444217 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0011380.1 MGP_AJ_G0009502.1 mouse_genomes_project 15 3422206 3422482 + Gm23218 misc_RNA misc_RNA MGP_AJ_T0040980.1 MGP_AJ_G0021834.1 mouse_genomes_project 15 55442829 55595484 + MGP_AJ_P0040980 Fer1l6 protein_coding protein_coding MGP_AJ_T0040981.1 MGP_AJ_G0021834.1 mouse_genomes_project 15 55570105 55578684 + Fer1l6 protein_coding processed_transcript MGP_AJ_T0040982.1 MGP_AJ_G0021834.1 mouse_genomes_project 15 55581067 55597643 + Fer1l6 protein_coding retained_intron MGP_AJ_T0013081.1 MGP_AJ_G0011176.1 mouse_genomes_project 15 50979472 50980945 - processed_pseudogene processed_pseudogene MGP_AJ_T0042056.1 MGP_AJ_G0022153.1 mouse_genomes_project 15 83401203 83443041 + Ppara protein_coding processed_transcript MGP_AJ_T0042057.1 MGP_AJ_G0022153.1 mouse_genomes_project 15 83401784 83470614 + MGP_AJ_P0042057 Ppara protein_coding protein_coding MGP_AJ_T0042058.1 MGP_AJ_G0022153.1 mouse_genomes_project 15 83401859 83443136 + Ppara protein_coding processed_transcript MGP_AJ_T0042059.1 MGP_AJ_G0022153.1 mouse_genomes_project 15 83401996 83471275 + MGP_AJ_P0042059 Ppara protein_coding protein_coding MGP_AJ_T0042060.1 MGP_AJ_G0022153.1 mouse_genomes_project 15 83402351 83470199 + MGP_AJ_P0042060 Ppara protein_coding protein_coding MGP_AJ_T0042061.1 MGP_AJ_G0022153.1 mouse_genomes_project 15 83437642 83443176 + Ppara protein_coding processed_transcript MGP_AJ_T0042492.1 MGP_AJ_G0022287.1 mouse_genomes_project 15 97125751 97179001 - MGP_AJ_P0042492 Fmnl3 protein_coding protein_coding MGP_AJ_T0042493.1 MGP_AJ_G0022287.1 mouse_genomes_project 15 97125751 97178968 - MGP_AJ_P0042493 Fmnl3 protein_coding protein_coding MGP_AJ_T0042494.1 MGP_AJ_G0022287.1 mouse_genomes_project 15 97125751 97178968 - MGP_AJ_P0042494 Fmnl3 protein_coding protein_coding MGP_AJ_T0042495.1 MGP_AJ_G0022287.1 mouse_genomes_project 15 97132926 97134194 - Fmnl3 protein_coding retained_intron MGP_AJ_T0042496.1 MGP_AJ_G0022287.1 mouse_genomes_project 15 97136413 97144298 - Fmnl3 protein_coding processed_transcript MGP_AJ_T0042803.1 MGP_AJ_G0022392.1 mouse_genomes_project 15 101069728 101072923 + MGP_AJ_P0042803 Hoxc8 protein_coding protein_coding MGP_AJ_T0042804.1 MGP_AJ_G0022392.1 mouse_genomes_project 15 101071010 101073213 + Hoxc8 protein_coding retained_intron MGP_AJ_T0041298.1 MGP_AJ_G0021933.1 mouse_genomes_project 15 73369511 73375492 - MGP_AJ_P0041298 protein_coding protein_coding MGP_AJ_T0100850.1 MGP_AJ_G0038816.1 mouse_genomes_project 15 77993077 77993214 - Gm23220 snoRNA snoRNA MGP_AJ_T0013071.1 MGP_AJ_G0011166.1 mouse_genomes_project 15 34411273 34411951 - processed_pseudogene processed_pseudogene MGP_AJ_T0041571.1 MGP_AJ_G0022006.1 mouse_genomes_project 15 75979593 75994103 - MGP_AJ_P0041571 Il2rb protein_coding protein_coding MGP_AJ_T0041572.1 MGP_AJ_G0022006.1 mouse_genomes_project 15 75980365 75992795 - MGP_AJ_P0041572 Il2rb protein_coding protein_coding MGP_AJ_T0041587.1 MGP_AJ_G0022014.1 mouse_genomes_project 15 76352597 76361462 + MGP_AJ_P0041587 Cdc42ep1 protein_coding protein_coding MGP_AJ_T0102099.1 MGP_AJ_G0039869.1 mouse_genomes_project 15 60775781 60869327 + unitary_pseudogene processed_transcript MGP_AJ_T0102100.1 MGP_AJ_G0039869.1 mouse_genomes_project 15 60775794 60926318 + unitary_pseudogene processed_transcript MGP_AJ_T0102101.1 MGP_AJ_G0039869.1 mouse_genomes_project 15 60905109 60926529 + unitary_pseudogene unitary_pseudogene MGP_AJ_T0003591.1 MGP_AJ_G0003253.1 mouse_genomes_project 15 2091394 2102935 - Gm15938 antisense antisense MGP_AJ_T0041283.1 MGP_AJ_G0021929.1 mouse_genomes_project 15 73283517 73296758 - MGP_AJ_P0041283 Fam83h protein_coding protein_coding MGP_AJ_T0041284.1 MGP_AJ_G0021929.1 mouse_genomes_project 15 73283517 73291921 - MGP_AJ_P0041284 Fam83h protein_coding protein_coding MGP_AJ_T0040675.1 MGP_AJ_G0021719.1 mouse_genomes_project 15 24818938 25114253 - MGP_AJ_P0040675 Trio protein_coding protein_coding MGP_AJ_T0003590.1 MGP_AJ_G0003252.1 mouse_genomes_project 15 963978 967252 - Gm15632 antisense antisense MGP_AJ_T0040979.1 MGP_AJ_G0021833.1 mouse_genomes_project 15 55350534 55390021 + MGP_AJ_P0040979 Fam91a1 protein_coding protein_coding MGP_AJ_T0017473.1 MGP_AJ_G0015282.1 mouse_genomes_project 15 86788614 86792522 - 1810021B22Rik processed_transcript antisense MGP_AJ_T0017474.1 MGP_AJ_G0015282.1 mouse_genomes_project 15 86788614 86791670 - 1810021B22Rik processed_transcript lincRNA MGP_AJ_T0017475.1 MGP_AJ_G0015282.1 mouse_genomes_project 15 86788616 86792584 - 1810021B22Rik processed_transcript antisense MGP_AJ_T0017476.1 MGP_AJ_G0015282.1 mouse_genomes_project 15 86788616 86792522 - 1810021B22Rik processed_transcript antisense MGP_AJ_T0017477.1 MGP_AJ_G0015282.1 mouse_genomes_project 15 86788616 86793225 - 1810021B22Rik processed_transcript lincRNA MGP_AJ_T0041658.1 MGP_AJ_G0022032.1 mouse_genomes_project 15 76804529 76846079 - MGP_AJ_P0041658 Pla2g6 protein_coding protein_coding MGP_AJ_T0041659.1 MGP_AJ_G0022032.1 mouse_genomes_project 15 76804529 76846027 - MGP_AJ_P0041659 Pla2g6 protein_coding protein_coding MGP_AJ_T0041660.1 MGP_AJ_G0022032.1 mouse_genomes_project 15 76804529 76846054 - MGP_AJ_P0041660 Pla2g6 protein_coding protein_coding MGP_AJ_T0041661.1 MGP_AJ_G0022032.1 mouse_genomes_project 15 76804529 76845815 - MGP_AJ_P0041661 Pla2g6 protein_coding protein_coding MGP_AJ_T0041662.1 MGP_AJ_G0022032.1 mouse_genomes_project 15 76804533 76846104 - MGP_AJ_P0041662 Pla2g6 protein_coding protein_coding MGP_AJ_T0041663.1 MGP_AJ_G0022032.1 mouse_genomes_project 15 76807472 76822578 - Pla2g6 protein_coding retained_intron MGP_AJ_T0041664.1 MGP_AJ_G0022032.1 mouse_genomes_project 15 76821094 76823771 - Pla2g6 protein_coding retained_intron MGP_AJ_T0041665.1 MGP_AJ_G0022032.1 mouse_genomes_project 15 76823726 76826853 - Pla2g6 protein_coding retained_intron MGP_AJ_T0041666.1 MGP_AJ_G0022032.1 mouse_genomes_project 15 76826909 76846241 - MGP_AJ_P0041666 Pla2g6 protein_coding protein_coding MGP_AJ_T0041667.1 MGP_AJ_G0022032.1 mouse_genomes_project 15 76828850 76835713 - Pla2g6 protein_coding retained_intron MGP_AJ_T0041668.1 MGP_AJ_G0022032.1 mouse_genomes_project 15 76828918 76841203 - MGP_AJ_P0041668 Pla2g6 protein_coding protein_coding MGP_AJ_T0041669.1 MGP_AJ_G0022032.1 mouse_genomes_project 15 76835571 76842341 - MGP_AJ_P0041669 Pla2g6 protein_coding protein_coding MGP_AJ_T0099569.1 MGP_AJ_G0037535.1 mouse_genomes_project 15 78587576 78587727 + Gm25131 snRNA snRNA MGP_AJ_T0006789.1 MGP_AJ_G0005595.1 mouse_genomes_project 15 77219444 77222679 - Gm26884 lincRNA lincRNA MGP_AJ_T0100829.1 MGP_AJ_G0038795.1 mouse_genomes_project 15 31502147 31502279 - Gm24523 snoRNA snoRNA MGP_AJ_T0003607.1 MGP_AJ_G0003267.1 mouse_genomes_project 15 71832880 71834094 + 4933427E11Rik antisense antisense MGP_AJ_T0003608.1 MGP_AJ_G0003267.1 mouse_genomes_project 15 71832880 71834092 + 4933427E11Rik antisense antisense MGP_AJ_T0040410.1 MGP_AJ_G0021641.1 mouse_genomes_project 15 142766 167368 - MGP_AJ_P0040410 Ccdc152 protein_coding protein_coding MGP_AJ_T0041487.1 MGP_AJ_G0021974.1 mouse_genomes_project 15 74194401 74196649 + MGP_AJ_P0041487 Rpl8 protein_coding protein_coding MGP_AJ_T0102354.1 MGP_AJ_G0040096.1 mouse_genomes_project 15 80364028 80368208 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0042634.1 MGP_AJ_G0022327.1 mouse_genomes_project 15 99088603 99106609 + MGP_AJ_P0042634 Acvrl1 protein_coding protein_coding MGP_AJ_T0042635.1 MGP_AJ_G0022327.1 mouse_genomes_project 15 99088618 99094812 + MGP_AJ_P0042635 Acvrl1 protein_coding protein_coding MGP_AJ_T0042636.1 MGP_AJ_G0022327.1 mouse_genomes_project 15 99088632 99104906 + MGP_AJ_P0042636 Acvrl1 protein_coding protein_coding MGP_AJ_T0042637.1 MGP_AJ_G0022327.1 mouse_genomes_project 15 99088632 99095432 + MGP_AJ_P0042637 Acvrl1 protein_coding protein_coding MGP_AJ_T0042638.1 MGP_AJ_G0022327.1 mouse_genomes_project 15 99088655 99104905 + MGP_AJ_P0042638 Acvrl1 protein_coding protein_coding MGP_AJ_T0042639.1 MGP_AJ_G0022327.1 mouse_genomes_project 15 99089003 99104907 + MGP_AJ_P0042639 Acvrl1 protein_coding protein_coding MGP_AJ_T0042640.1 MGP_AJ_G0022327.1 mouse_genomes_project 15 99089005 99104905 + MGP_AJ_P0042640 Acvrl1 protein_coding protein_coding MGP_AJ_T0042641.1 MGP_AJ_G0022327.1 mouse_genomes_project 15 99093533 99095583 + MGP_AJ_P0042641 Acvrl1 protein_coding protein_coding MGP_AJ_T0042642.1 MGP_AJ_G0022327.1 mouse_genomes_project 15 99094250 99106609 + MGP_AJ_P0042642 Acvrl1 protein_coding protein_coding MGP_AJ_T0042643.1 MGP_AJ_G0022327.1 mouse_genomes_project 15 99095768 99097142 + Acvrl1 protein_coding retained_intron MGP_AJ_T0042644.1 MGP_AJ_G0022327.1 mouse_genomes_project 15 99097709 99103883 + Acvrl1 protein_coding processed_transcript MGP_AJ_T0041576.1 MGP_AJ_G0022008.1 mouse_genomes_project 15 76036167 76043500 - MGP_AJ_P0041576 Sstr3 protein_coding protein_coding MGP_AJ_T0040678.1 MGP_AJ_G0021722.1 mouse_genomes_project 15 28266441 28315998 + MGP_AJ_P0040678 Dap protein_coding protein_coding MGP_AJ_T0040679.1 MGP_AJ_G0021722.1 mouse_genomes_project 15 28266515 28317018 + MGP_AJ_P0040679 Dap protein_coding protein_coding MGP_AJ_T0040680.1 MGP_AJ_G0021722.1 mouse_genomes_project 15 28266546 28316135 + MGP_AJ_P0040680 Dap protein_coding protein_coding MGP_AJ_T0040681.1 MGP_AJ_G0021722.1 mouse_genomes_project 15 28311044 28316060 + MGP_AJ_P0040681 Dap protein_coding protein_coding MGP_AJ_T0042242.1 MGP_AJ_G0022202.1 mouse_genomes_project 15 87951725 87957969 + MGP_AJ_P0042242 Alg10b protein_coding protein_coding MGP_AJ_T0040903.1 MGP_AJ_G0021805.1 mouse_genomes_project 15 50832082 50833773 + MGP_AJ_P0040903 Gm7489 protein_coding protein_coding MGP_AJ_T0013099.1 MGP_AJ_G0011194.1 mouse_genomes_project 15 78499353 78499748 + processed_pseudogene processed_pseudogene MGP_AJ_T0099537.1 MGP_AJ_G0037503.1 mouse_genomes_project 15 21931606 21931763 - Gm22810 snRNA snRNA MGP_AJ_T0003612.1 MGP_AJ_G0003271.1 mouse_genomes_project 15 76681438 76731832 + Gm10863 antisense antisense MGP_AJ_T0003613.1 MGP_AJ_G0003271.1 mouse_genomes_project 15 76681455 76731617 + Gm10863 antisense antisense MGP_AJ_T0003614.1 MGP_AJ_G0003271.1 mouse_genomes_project 15 76681463 76731946 + Gm10863 antisense antisense MGP_AJ_T0003615.1 MGP_AJ_G0003271.1 mouse_genomes_project 15 76681463 76743393 + Gm10863 antisense antisense MGP_AJ_T0003616.1 MGP_AJ_G0003271.1 mouse_genomes_project 15 76724757 76733287 + Gm10863 antisense antisense MGP_AJ_T0042389.1 MGP_AJ_G0022245.1 mouse_genomes_project 15 95877749 95908202 - MGP_AJ_P0042389 Asb8 protein_coding protein_coding MGP_AJ_T0042390.1 MGP_AJ_G0022245.1 mouse_genomes_project 15 95878826 95888520 - MGP_AJ_P0042390 Asb8 protein_coding protein_coding MGP_AJ_T0042391.1 MGP_AJ_G0022245.1 mouse_genomes_project 15 95878826 95888473 - MGP_AJ_P0042391 Asb8 protein_coding protein_coding MGP_AJ_T0042392.1 MGP_AJ_G0022245.1 mouse_genomes_project 15 95878826 95908137 - MGP_AJ_P0042392 Asb8 protein_coding protein_coding MGP_AJ_T0013072.1 MGP_AJ_G0011167.1 mouse_genomes_project 15 34506017 34507465 + processed_pseudogene processed_pseudogene MGP_AJ_T0041512.1 MGP_AJ_G0021984.1 mouse_genomes_project 15 74722743 74746967 - MGP_AJ_P0041512 protein_coding protein_coding MGP_AJ_T0042612.1 MGP_AJ_G0022324.1 mouse_genomes_project 15 98816270 98898961 + MGP_AJ_P0042612 Scn8a protein_coding protein_coding MGP_AJ_T0042613.1 MGP_AJ_G0022324.1 mouse_genomes_project 15 98816270 98898961 + MGP_AJ_P0042613 Scn8a protein_coding protein_coding MGP_AJ_T0042614.1 MGP_AJ_G0022324.1 mouse_genomes_project 15 98817057 98975343 + MGP_AJ_P0042614 Scn8a protein_coding protein_coding MGP_AJ_T0042615.1 MGP_AJ_G0022324.1 mouse_genomes_project 15 98817073 98898961 + MGP_AJ_P0042615 Scn8a protein_coding protein_coding MGP_AJ_T0042616.1 MGP_AJ_G0022324.1 mouse_genomes_project 15 98817095 99010178 + MGP_AJ_P0042616 Scn8a protein_coding protein_coding MGP_AJ_T0042617.1 MGP_AJ_G0022324.1 mouse_genomes_project 15 98817316 99010187 + MGP_AJ_P0042617 Scn8a protein_coding protein_coding MGP_AJ_T0042618.1 MGP_AJ_G0022324.1 mouse_genomes_project 15 98817357 99005943 + MGP_AJ_P0042618 Scn8a protein_coding protein_coding MGP_AJ_T0042619.1 MGP_AJ_G0022324.1 mouse_genomes_project 15 98817364 99005860 + MGP_AJ_P0042619 Scn8a protein_coding protein_coding MGP_AJ_T0042620.1 MGP_AJ_G0022324.1 mouse_genomes_project 15 98817832 98898961 + MGP_AJ_P0042620 Scn8a protein_coding protein_coding MGP_AJ_T0042621.1 MGP_AJ_G0022324.1 mouse_genomes_project 15 98895706 98903451 + MGP_AJ_P0042621 Scn8a protein_coding protein_coding MGP_AJ_T0042622.1 MGP_AJ_G0022324.1 mouse_genomes_project 15 98898904 99010178 + MGP_AJ_P0042622 Scn8a protein_coding protein_coding MGP_AJ_T0042623.1 MGP_AJ_G0022324.1 mouse_genomes_project 15 98898939 98903074 + MGP_AJ_P0042623 Scn8a protein_coding protein_coding MGP_AJ_T0042624.1 MGP_AJ_G0022324.1 mouse_genomes_project 15 98898958 99004935 + MGP_AJ_P0042624 Scn8a protein_coding protein_coding MGP_AJ_T0042625.1 MGP_AJ_G0022324.1 mouse_genomes_project 15 98918781 98925235 + MGP_AJ_P0042625 Scn8a protein_coding protein_coding MGP_AJ_T0042626.1 MGP_AJ_G0022324.1 mouse_genomes_project 15 98920193 98923558 + Scn8a protein_coding retained_intron MGP_AJ_T0042627.1 MGP_AJ_G0022324.1 mouse_genomes_project 15 98920228 98923405 + Scn8a protein_coding retained_intron MGP_AJ_T0042628.1 MGP_AJ_G0022324.1 mouse_genomes_project 15 98920357 98965754 + MGP_AJ_P0042628 Scn8a protein_coding protein_coding MGP_AJ_T0042629.1 MGP_AJ_G0022324.1 mouse_genomes_project 15 98932039 98933680 + Scn8a protein_coding retained_intron MGP_AJ_T0042630.1 MGP_AJ_G0022324.1 mouse_genomes_project 15 98933564 98938219 + Scn8a protein_coding retained_intron MGP_AJ_T0042631.1 MGP_AJ_G0022324.1 mouse_genomes_project 15 98980189 98994024 + Scn8a protein_coding processed_transcript MGP_AJ_T0041003.1 MGP_AJ_G0021848.1 mouse_genomes_project 15 57857641 57861323 - MGP_AJ_P0041003 A1bg protein_coding protein_coding MGP_AJ_T0099542.1 MGP_AJ_G0037508.1 mouse_genomes_project 15 34683461 34683581 - Gm24833 snRNA snRNA MGP_AJ_T0042801.1 MGP_AJ_G0022391.1 mouse_genomes_project 15 101055665 101060893 + MGP_AJ_P0042801 Hoxc9 protein_coding protein_coding MGP_AJ_T0042802.1 MGP_AJ_G0022391.1 mouse_genomes_project 15 101056258 101064289 + MGP_AJ_P0042802 Hoxc9 protein_coding protein_coding MGP_AJ_T0040760.1 MGP_AJ_G0021753.1 mouse_genomes_project 15 33260031 33314945 + MGP_AJ_P0040760 Spag1 protein_coding unknown_likely_coding MGP_AJ_T0042370.1 MGP_AJ_G0022241.1 mouse_genomes_project 15 95705949 95711806 + MGP_AJ_P0042370 Tmem106c protein_coding unknown_likely_coding MGP_AJ_T0040865.1 MGP_AJ_G0021793.1 mouse_genomes_project 15 41643466 41761178 - MGP_AJ_P0040865 Sybu protein_coding protein_coding MGP_AJ_T0040866.1 MGP_AJ_G0021793.1 mouse_genomes_project 15 41643466 41761178 - MGP_AJ_P0040866 Sybu protein_coding protein_coding MGP_AJ_T0040867.1 MGP_AJ_G0021793.1 mouse_genomes_project 15 41643466 41721494 - MGP_AJ_P0040867 Sybu protein_coding protein_coding MGP_AJ_T0010062.1 MGP_AJ_G0008184.1 mouse_genomes_project 15 77118742 77118868 - Gm27903 miRNA miRNA MGP_AJ_T0042326.1 MGP_AJ_G0022229.1 mouse_genomes_project 15 94315543 94387928 - MGP_AJ_P0042326 Slc38a1 protein_coding protein_coding MGP_AJ_T0042327.1 MGP_AJ_G0022229.1 mouse_genomes_project 15 94315543 94387547 - MGP_AJ_P0042327 Slc38a1 protein_coding protein_coding MGP_AJ_T0042328.1 MGP_AJ_G0022229.1 mouse_genomes_project 15 94315543 94388456 - MGP_AJ_P0042328 Slc38a1 protein_coding protein_coding MGP_AJ_T0042569.1 MGP_AJ_G0022312.1 mouse_genomes_project 15 98311912 98347553 - MGP_AJ_P0042569 Slc11a2 protein_coding protein_coding MGP_AJ_T0042570.1 MGP_AJ_G0022312.1 mouse_genomes_project 15 98316593 98347500 - MGP_AJ_P0042570 Slc11a2 protein_coding protein_coding MGP_AJ_T0042571.1 MGP_AJ_G0022312.1 mouse_genomes_project 15 98321624 98327274 - MGP_AJ_P0042571 Slc11a2 protein_coding protein_coding MGP_AJ_T0042572.1 MGP_AJ_G0022312.1 mouse_genomes_project 15 98321812 98327453 - Slc11a2 protein_coding retained_intron MGP_AJ_T0042573.1 MGP_AJ_G0022312.1 mouse_genomes_project 15 98330336 98349570 - MGP_AJ_P0042573 Slc11a2 protein_coding protein_coding MGP_AJ_T0042574.1 MGP_AJ_G0022312.1 mouse_genomes_project 15 98332170 98347467 - MGP_AJ_P0042574 Slc11a2 protein_coding nonsense_mediated_decay MGP_AJ_T0042575.1 MGP_AJ_G0022312.1 mouse_genomes_project 15 98333299 98348712 - MGP_AJ_P0042575 Slc11a2 protein_coding protein_coding MGP_AJ_T0042576.1 MGP_AJ_G0022312.1 mouse_genomes_project 15 98334144 98348590 - MGP_AJ_P0042576 Slc11a2 protein_coding protein_coding MGP_AJ_T0041544.1 MGP_AJ_G0021997.1 mouse_genomes_project 15 75623878 75636956 - MGP_AJ_P0041544 Pvalb protein_coding protein_coding MGP_AJ_T0041545.1 MGP_AJ_G0021997.1 mouse_genomes_project 15 75623881 75639119 - MGP_AJ_P0041545 Pvalb protein_coding protein_coding MGP_AJ_T0041737.1 MGP_AJ_G0022051.1 mouse_genomes_project 15 77444648 77461191 - MGP_AJ_P0041737 Cbx7 protein_coding protein_coding MGP_AJ_T0041738.1 MGP_AJ_G0022051.1 mouse_genomes_project 15 77444662 77461314 - MGP_AJ_P0041738 Cbx7 protein_coding protein_coding MGP_AJ_T0041739.1 MGP_AJ_G0022051.1 mouse_genomes_project 15 77444665 77461443 - Cbx7 protein_coding retained_intron MGP_AJ_T0041740.1 MGP_AJ_G0022051.1 mouse_genomes_project 15 77447027 77462559 - MGP_AJ_P0041740 Cbx7 protein_coding protein_coding MGP_AJ_T0041741.1 MGP_AJ_G0022051.1 mouse_genomes_project 15 77447297 77500098 - MGP_AJ_P0041741 Cbx7 protein_coding protein_coding MGP_AJ_T0041742.1 MGP_AJ_G0022051.1 mouse_genomes_project 15 77447800 77461191 - MGP_AJ_P0041742 Cbx7 protein_coding protein_coding MGP_AJ_T0041743.1 MGP_AJ_G0022051.1 mouse_genomes_project 15 77459274 77462490 - Cbx7 protein_coding retained_intron MGP_AJ_T0099554.1 MGP_AJ_G0037520.1 mouse_genomes_project 15 55755287 55755443 - Gm24041 snRNA snRNA MGP_AJ_T0099536.1 MGP_AJ_G0037502.1 mouse_genomes_project 15 20720760 20720918 - Gm23980 snRNA snRNA MGP_AJ_T0040989.1 MGP_AJ_G0021841.1 mouse_genomes_project 15 55873639 55905837 - MGP_AJ_P0040989 Mtss1 protein_coding unknown_likely_coding MGP_AJ_T0040990.1 MGP_AJ_G0021841.1 mouse_genomes_project 15 55873653 56015890 - MGP_AJ_P0040990 Mtss1 protein_coding protein_coding MGP_AJ_T0041989.1 MGP_AJ_G0022129.1 mouse_genomes_project 15 81407618 81420264 + MGP_AJ_P0041989 Mpped1 protein_coding protein_coding MGP_AJ_T0041990.1 MGP_AJ_G0022129.1 mouse_genomes_project 15 81417033 81489203 + MGP_AJ_P0041990 Mpped1 protein_coding nonsense_mediated_decay MGP_AJ_T0041991.1 MGP_AJ_G0022129.1 mouse_genomes_project 15 81420071 81487023 + MGP_AJ_P0041991 Mpped1 protein_coding protein_coding MGP_AJ_T0041992.1 MGP_AJ_G0022129.1 mouse_genomes_project 15 81420146 81487119 + MGP_AJ_P0041992 Mpped1 protein_coding protein_coding MGP_AJ_T0041993.1 MGP_AJ_G0022129.1 mouse_genomes_project 15 81420167 81489197 + MGP_AJ_P0041993 Mpped1 protein_coding protein_coding MGP_AJ_T0041994.1 MGP_AJ_G0022129.1 mouse_genomes_project 15 81424714 81482786 + MGP_AJ_P0041994 Mpped1 protein_coding protein_coding MGP_AJ_T0041995.1 MGP_AJ_G0022129.1 mouse_genomes_project 15 81428174 81487004 + MGP_AJ_P0041995 Mpped1 protein_coding nonsense_mediated_decay MGP_AJ_T0041996.1 MGP_AJ_G0022129.1 mouse_genomes_project 15 81465811 81487024 + MGP_AJ_P0041996 Mpped1 protein_coding protein_coding MGP_AJ_T0041997.1 MGP_AJ_G0022129.1 mouse_genomes_project 15 81465844 81485232 + MGP_AJ_P0041997 Mpped1 protein_coding protein_coding MGP_AJ_T0013091.1 MGP_AJ_G0011186.1 mouse_genomes_project 15 73036670 73122653 - processed_pseudogene processed_pseudogene MGP_AJ_T0100852.1 MGP_AJ_G0038818.1 mouse_genomes_project 15 92410125 92410257 - Gm25546 snoRNA snoRNA MGP_AJ_T0040545.1 MGP_AJ_G0021678.1 mouse_genomes_project 15 7121866 7272976 + protein_coding retained_intron MGP_AJ_T0040546.1 MGP_AJ_G0021678.1 mouse_genomes_project 15 7122042 7291853 + protein_coding processed_transcript MGP_AJ_T0040547.1 MGP_AJ_G0021678.1 mouse_genomes_project 15 7122274 7292123 + MGP_AJ_P0040547 protein_coding nonsense_mediated_decay MGP_AJ_T0040548.1 MGP_AJ_G0021678.1 mouse_genomes_project 15 7122283 7280593 + MGP_AJ_P0040548 protein_coding protein_coding MGP_AJ_T0040549.1 MGP_AJ_G0021678.1 mouse_genomes_project 15 7122409 7264537 + protein_coding retained_intron MGP_AJ_T0040550.1 MGP_AJ_G0021678.1 mouse_genomes_project 15 7158748 7263828 + protein_coding processed_transcript MGP_AJ_T0040551.1 MGP_AJ_G0021678.1 mouse_genomes_project 15 7161238 7263894 + MGP_AJ_P0040551 protein_coding protein_coding MGP_AJ_T0040552.1 MGP_AJ_G0021678.1 mouse_genomes_project 15 7169241 7292749 + MGP_AJ_P0040552 protein_coding protein_coding MGP_AJ_T0040553.1 MGP_AJ_G0021678.1 mouse_genomes_project 15 7169241 7289347 + MGP_AJ_P0040553 protein_coding protein_coding MGP_AJ_T0040554.1 MGP_AJ_G0021678.1 mouse_genomes_project 15 7169241 7285566 + MGP_AJ_P0040554 protein_coding protein_coding MGP_AJ_T0040555.1 MGP_AJ_G0021678.1 mouse_genomes_project 15 7194648 7267039 + MGP_AJ_P0040555 protein_coding protein_coding MGP_AJ_T0040556.1 MGP_AJ_G0021678.1 mouse_genomes_project 15 7258642 7267021 + MGP_AJ_P0040556 protein_coding protein_coding MGP_AJ_T0041624.1 MGP_AJ_G0022025.1 mouse_genomes_project 15 76624188 76652941 + MGP_AJ_P0041624 Micall1 protein_coding protein_coding MGP_AJ_T0041937.1 MGP_AJ_G0022114.1 mouse_genomes_project 15 80405353 80511673 - MGP_AJ_P0041937 Tcf20 protein_coding protein_coding MGP_AJ_T0041938.1 MGP_AJ_G0022114.1 mouse_genomes_project 15 80405353 80511673 - MGP_AJ_P0041938 Tcf20 protein_coding protein_coding MGP_AJ_T0042811.1 MGP_AJ_G0022395.1 mouse_genomes_project 15 101234043 101238741 - MGP_AJ_P0042811 Smug1 protein_coding protein_coding MGP_AJ_T0006745.1 MGP_AJ_G0005567.1 mouse_genomes_project 15 7647980 7716932 + 4930556M19Rik lincRNA lincRNA MGP_AJ_T0003594.1 MGP_AJ_G0003256.1 mouse_genomes_project 15 34309479 34310717 - Gm16136 antisense antisense MGP_AJ_T0003595.1 MGP_AJ_G0003256.1 mouse_genomes_project 15 34309497 34310867 - Gm16136 antisense antisense MGP_AJ_T0003596.1 MGP_AJ_G0003256.1 mouse_genomes_project 15 34310212 34310699 - Gm16136 antisense antisense MGP_AJ_T0041511.1 MGP_AJ_G0021983.1 mouse_genomes_project 15 74694930 74708202 - MGP_AJ_P0041511 protein_coding protein_coding MGP_AJ_T0042658.1 MGP_AJ_G0022336.1 mouse_genomes_project 15 99427885 99432590 - MGP_AJ_P0042658 Krt81 protein_coding protein_coding MGP_AJ_T0041504.1 MGP_AJ_G0021980.1 mouse_genomes_project 15 74679194 74691447 - MGP_AJ_P0041504 Apol7a protein_coding protein_coding MGP_AJ_T0041505.1 MGP_AJ_G0021980.1 mouse_genomes_project 15 74679195 74691423 - MGP_AJ_P0041505 Apol7a protein_coding protein_coding MGP_AJ_T0041506.1 MGP_AJ_G0021980.1 mouse_genomes_project 15 74679930 74687420 - MGP_AJ_P0041506 Apol7a protein_coding protein_coding MGP_AJ_T0041508.1 MGP_AJ_G0021980.1 mouse_genomes_project 15 74684294 74687896 - Apol7a protein_coding retained_intron MGP_AJ_T0041269.1 MGP_AJ_G0021923.1 mouse_genomes_project 15 73198385 73203493 - MGP_AJ_P0041269 Pycrl protein_coding protein_coding MGP_AJ_T0010102.1 MGP_AJ_G0008224.1 mouse_genomes_project 15 101094007 101094099 + Mir615 miRNA miRNA MGP_AJ_T0042252.1 MGP_AJ_G0022205.1 mouse_genomes_project 15 88856804 88902571 - MGP_AJ_P0042252 Abcd2 protein_coding protein_coding MGP_AJ_T0041875.1 MGP_AJ_G0022088.1 mouse_genomes_project 15 79515083 79524913 - MGP_AJ_P0041875 Pmm1 protein_coding protein_coding MGP_AJ_T0041876.1 MGP_AJ_G0022088.1 mouse_genomes_project 15 79515083 79524852 - MGP_AJ_P0041876 Pmm1 protein_coding protein_coding MGP_AJ_T0041877.1 MGP_AJ_G0022088.1 mouse_genomes_project 15 79515377 79517484 - Pmm1 protein_coding retained_intron MGP_AJ_T0041878.1 MGP_AJ_G0022088.1 mouse_genomes_project 15 79515419 79524825 - MGP_AJ_P0041878 Pmm1 protein_coding nonsense_mediated_decay MGP_AJ_T0041879.1 MGP_AJ_G0022088.1 mouse_genomes_project 15 79515522 79516244 - Pmm1 protein_coding retained_intron MGP_AJ_T0041880.1 MGP_AJ_G0022088.1 mouse_genomes_project 15 79519529 79524816 - Pmm1 protein_coding retained_intron MGP_AJ_T0041881.1 MGP_AJ_G0022088.1 mouse_genomes_project 15 79521317 79524747 - Pmm1 protein_coding retained_intron MGP_AJ_T0013065.1 MGP_AJ_G0011160.1 mouse_genomes_project 15 10412316 10412963 + processed_pseudogene processed_pseudogene MGP_AJ_T0041485.1 MGP_AJ_G0021973.1 mouse_genomes_project 15 74190238 74191634 + MGP_AJ_P0041485 Commd5 protein_coding protein_coding MGP_AJ_T0041486.1 MGP_AJ_G0021973.1 mouse_genomes_project 15 74190264 74191520 + MGP_AJ_P0041486 Commd5 protein_coding protein_coding MGP_AJ_T0041245.1 MGP_AJ_G0021916.1 mouse_genomes_project 15 73028591 73029671 - MGP_AJ_P0041245 Mafa protein_coding protein_coding MGP_AJ_T0102342.1 MGP_AJ_G0040084.1 mouse_genomes_project 15 72064519 72065369 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0003618.1 MGP_AJ_G0003273.1 mouse_genomes_project 15 78963491 78967117 - Gm17025 antisense antisense MGP_AJ_T0041065.1 MGP_AJ_G0021864.1 mouse_genomes_project 15 63533593 63569742 - MGP_AJ_P0041065 Tmem71 protein_coding protein_coding MGP_AJ_T0040921.1 MGP_AJ_G0021814.1 mouse_genomes_project 15 52035633 52187070 + MGP_AJ_P0040921 Deptor protein_coding protein_coding MGP_AJ_T0040922.1 MGP_AJ_G0021814.1 mouse_genomes_project 15 52035740 52147231 + MGP_AJ_P0040922 Deptor protein_coding protein_coding MGP_AJ_T0040923.1 MGP_AJ_G0021814.1 mouse_genomes_project 15 52057476 52181794 + MGP_AJ_P0040923 Deptor protein_coding protein_coding MGP_AJ_T0040906.1 MGP_AJ_G0021808.1 mouse_genomes_project 15 51491038 51522251 + MGP_AJ_P0040906 Mal2 protein_coding protein_coding MGP_AJ_T0041098.1 MGP_AJ_G0021871.1 mouse_genomes_project 15 65085772 65263853 - MGP_AJ_P0041098 Zfat protein_coding protein_coding MGP_AJ_T0041099.1 MGP_AJ_G0021871.1 mouse_genomes_project 15 65086327 65263784 - MGP_AJ_P0041099 Zfat protein_coding protein_coding MGP_AJ_T0041100.1 MGP_AJ_G0021871.1 mouse_genomes_project 15 65086328 65263835 - MGP_AJ_P0041100 Zfat protein_coding protein_coding MGP_AJ_T0041101.1 MGP_AJ_G0021871.1 mouse_genomes_project 15 65180815 65263844 - MGP_AJ_P0041101 Zfat protein_coding protein_coding MGP_AJ_T0041102.1 MGP_AJ_G0021871.1 mouse_genomes_project 15 65222444 65263846 - Zfat protein_coding retained_intron MGP_AJ_T0041383.1 MGP_AJ_G0021948.1 mouse_genomes_project 15 73660307 73663288 - MGP_AJ_P0041383 Tssk5 protein_coding protein_coding MGP_AJ_T0041979.1 MGP_AJ_G0022125.1 mouse_genomes_project 15 81171103 81180018 - MGP_AJ_P0041979 Mcat protein_coding protein_coding MGP_AJ_T0042772.1 MGP_AJ_G0022381.1 mouse_genomes_project 15 100588370 100589247 - MGP_AJ_P0042772 Npff protein_coding protein_coding MGP_AJ_T0042774.1 MGP_AJ_G0022381.1 mouse_genomes_project 15 100588377 100589474 - Npff protein_coding retained_intron MGP_AJ_T0041103.1 MGP_AJ_G0021872.1 mouse_genomes_project 15 65929370 66088815 + MGP_AJ_P0041103 Khdrbs3 protein_coding protein_coding MGP_AJ_T0041573.1 MGP_AJ_G0022007.1 mouse_genomes_project 15 76022235 76028536 - C1qtnf6 protein_coding processed_transcript MGP_AJ_T0041574.1 MGP_AJ_G0022007.1 mouse_genomes_project 15 76022235 76028536 - MGP_AJ_P0041574 C1qtnf6 protein_coding protein_coding MGP_AJ_T0041575.1 MGP_AJ_G0022007.1 mouse_genomes_project 15 76024012 76026217 - C1qtnf6 protein_coding processed_transcript MGP_AJ_T0041860.1 MGP_AJ_G0022082.1 mouse_genomes_project 15 79406612 79406969 - MGP_AJ_P0041860 Gm8444 protein_coding protein_coding MGP_AJ_T0041578.1 MGP_AJ_G0022010.1 mouse_genomes_project 15 76099193 76124325 + MGP_AJ_P0041578 Cyth4 protein_coding protein_coding MGP_AJ_T0006795.1 MGP_AJ_G0005600.1 mouse_genomes_project 15 80976962 80988394 - 1700001L05Rik lincRNA lincRNA MGP_AJ_T0006796.1 MGP_AJ_G0005600.1 mouse_genomes_project 15 80976970 80988123 - 1700001L05Rik lincRNA lincRNA MGP_AJ_T0006797.1 MGP_AJ_G0005600.1 mouse_genomes_project 15 80976996 80988389 - 1700001L05Rik lincRNA lincRNA MGP_AJ_T0006798.1 MGP_AJ_G0005600.1 mouse_genomes_project 15 80978054 80986254 - 1700001L05Rik lincRNA lincRNA MGP_AJ_T0041905.1 MGP_AJ_G0022095.1 mouse_genomes_project 15 79714150 79772609 + MGP_AJ_P0041905 Srebf2 protein_coding protein_coding MGP_AJ_T0006760.1 MGP_AJ_G0005578.1 mouse_genomes_project 15 35638023 35685329 - 2310043O21Rik lincRNA lincRNA MGP_AJ_T0040486.1 MGP_AJ_G0021662.1 mouse_genomes_project 15 4127100 4314695 - MGP_AJ_P0040486 Egflam protein_coding protein_coding MGP_AJ_T0040487.1 MGP_AJ_G0021662.1 mouse_genomes_project 15 4127558 4314742 - MGP_AJ_P0040487 Egflam protein_coding protein_coding MGP_AJ_T0040488.1 MGP_AJ_G0021662.1 mouse_genomes_project 15 4127563 4314786 - MGP_AJ_P0040488 Egflam protein_coding nonsense_mediated_decay MGP_AJ_T0040489.1 MGP_AJ_G0021662.1 mouse_genomes_project 15 4133168 4143895 - Egflam protein_coding retained_intron MGP_AJ_T0040490.1 MGP_AJ_G0021662.1 mouse_genomes_project 15 4154641 4314660 - Egflam protein_coding retained_intron MGP_AJ_T0040491.1 MGP_AJ_G0021662.1 mouse_genomes_project 15 4174946 4176204 - Egflam protein_coding processed_transcript MGP_AJ_T0040492.1 MGP_AJ_G0021662.1 mouse_genomes_project 15 4224210 4314652 - Egflam protein_coding retained_intron MGP_AJ_T0006770.1 MGP_AJ_G0005586.1 mouse_genomes_project 15 43569985 43587271 + 4930548G14Rik lincRNA lincRNA MGP_AJ_T0006771.1 MGP_AJ_G0005586.1 mouse_genomes_project 15 43572134 43572452 + 4930548G14Rik lincRNA lincRNA MGP_AJ_T0042364.1 MGP_AJ_G0022240.1 mouse_genomes_project 15 95596982 95651132 - MGP_AJ_P0042364 Vdr protein_coding protein_coding MGP_AJ_T0042365.1 MGP_AJ_G0022240.1 mouse_genomes_project 15 95600093 95602254 - Vdr protein_coding retained_intron MGP_AJ_T0042366.1 MGP_AJ_G0022240.1 mouse_genomes_project 15 95619157 95639662 - MGP_AJ_P0042366 Vdr protein_coding protein_coding MGP_AJ_T0042367.1 MGP_AJ_G0022240.1 mouse_genomes_project 15 95619229 95653447 - MGP_AJ_P0042367 Vdr protein_coding protein_coding MGP_AJ_T0042368.1 MGP_AJ_G0022240.1 mouse_genomes_project 15 95627883 95653447 - MGP_AJ_P0042368 Vdr protein_coding protein_coding MGP_AJ_T0042369.1 MGP_AJ_G0022240.1 mouse_genomes_project 15 95627895 95652384 - MGP_AJ_P0042369 Vdr protein_coding protein_coding MGP_AJ_T0041335.1 MGP_AJ_G0021940.1 mouse_genomes_project 15 73583330 73594629 - MGP_AJ_P0041335 Oplah protein_coding protein_coding MGP_AJ_T0041336.1 MGP_AJ_G0021940.1 mouse_genomes_project 15 73583336 73584226 - Oplah protein_coding retained_intron MGP_AJ_T0041337.1 MGP_AJ_G0021940.1 mouse_genomes_project 15 73583336 73594773 - MGP_AJ_P0041337 Oplah protein_coding protein_coding MGP_AJ_T0041338.1 MGP_AJ_G0021940.1 mouse_genomes_project 15 73584076 73584774 - Oplah protein_coding retained_intron MGP_AJ_T0041339.1 MGP_AJ_G0021940.1 mouse_genomes_project 15 73587320 73587849 - Oplah protein_coding retained_intron MGP_AJ_T0041340.1 MGP_AJ_G0021940.1 mouse_genomes_project 15 73587609 73589096 - Oplah protein_coding retained_intron MGP_AJ_T0041341.1 MGP_AJ_G0021940.1 mouse_genomes_project 15 73587687 73594917 - MGP_AJ_P0041341 Oplah protein_coding protein_coding MGP_AJ_T0041342.1 MGP_AJ_G0021940.1 mouse_genomes_project 15 73588797 73589934 - Oplah protein_coding processed_transcript MGP_AJ_T0041343.1 MGP_AJ_G0021940.1 mouse_genomes_project 15 73594014 73616053 - MGP_AJ_P0041343 Oplah protein_coding protein_coding MGP_AJ_T0040571.1 MGP_AJ_G0021683.1 mouse_genomes_project 15 7418987 7426636 + MGP_AJ_P0040571 Rad1 protein_coding protein_coding MGP_AJ_T0040572.1 MGP_AJ_G0021683.1 mouse_genomes_project 15 7419018 7426636 + Rad1 protein_coding retained_intron MGP_AJ_T0040573.1 MGP_AJ_G0021683.1 mouse_genomes_project 15 7419038 7432216 + MGP_AJ_P0040573 Rad1 protein_coding protein_coding MGP_AJ_T0040574.1 MGP_AJ_G0021683.1 mouse_genomes_project 15 7419049 7423313 + MGP_AJ_P0040574 Rad1 protein_coding protein_coding MGP_AJ_T0040575.1 MGP_AJ_G0021683.1 mouse_genomes_project 15 7419444 7426325 + MGP_AJ_P0040575 Rad1 protein_coding nonsense_mediated_decay MGP_AJ_T0040576.1 MGP_AJ_G0021683.1 mouse_genomes_project 15 7419578 7426634 + MGP_AJ_P0040576 Rad1 protein_coding nonsense_mediated_decay MGP_AJ_T0013055.1 MGP_AJ_G0011150.1 mouse_genomes_project 15 622066 623050 - processed_pseudogene processed_pseudogene MGP_AJ_T0042592.1 MGP_AJ_G0022319.1 mouse_genomes_project 15 98560812 98576347 - MGP_AJ_P0042592 Smagp protein_coding protein_coding MGP_AJ_T0042593.1 MGP_AJ_G0022319.1 mouse_genomes_project 15 98560812 98576337 - MGP_AJ_P0042593 Smagp protein_coding protein_coding MGP_AJ_T0041652.1 MGP_AJ_G0022030.1 mouse_genomes_project 15 76767074 76770837 - MGP_AJ_P0041652 Slc16a8 protein_coding protein_coding MGP_AJ_T0017444.1 MGP_AJ_G0015267.1 mouse_genomes_project 15 34505903 34517452 - Gm15941 processed_transcript processed_transcript MGP_AJ_T0017445.1 MGP_AJ_G0015267.1 mouse_genomes_project 15 34506882 34513657 - Gm15941 processed_transcript processed_transcript MGP_AJ_T0017446.1 MGP_AJ_G0015267.1 mouse_genomes_project 15 34507073 34516936 - Gm15941 processed_transcript processed_transcript MGP_AJ_T0017447.1 MGP_AJ_G0015267.1 mouse_genomes_project 15 34507189 34517450 - Gm15941 processed_transcript processed_transcript MGP_AJ_T0017448.1 MGP_AJ_G0015267.1 mouse_genomes_project 15 34507342 34517441 - Gm15941 processed_transcript processed_transcript MGP_AJ_T0017449.1 MGP_AJ_G0015267.1 mouse_genomes_project 15 34512184 34518202 - Gm15941 processed_transcript processed_transcript MGP_AJ_T0040582.1 MGP_AJ_G0021686.1 mouse_genomes_project 15 7876479 7906709 + MGP_AJ_P0040582 C1qtnf3 protein_coding protein_coding MGP_AJ_T0040583.1 MGP_AJ_G0021686.1 mouse_genomes_project 15 7876504 7906265 + MGP_AJ_P0040583 C1qtnf3 protein_coding protein_coding MGP_AJ_T0010087.1 MGP_AJ_G0008209.1 mouse_genomes_project 15 87951774 87951827 + Mir7648 miRNA miRNA MGP_AJ_T0006794.1 MGP_AJ_G0005599.1 mouse_genomes_project 15 80583936 80590197 + AW121686 lincRNA lincRNA MGP_AJ_T0099583.1 MGP_AJ_G0037549.1 mouse_genomes_project 15 100434022 100434126 + Gm23590 snRNA snRNA MGP_AJ_T0042431.1 MGP_AJ_G0022263.1 mouse_genomes_project 15 96428590 96446319 - MGP_AJ_P0042431 Ddx23 protein_coding protein_coding MGP_AJ_T0042432.1 MGP_AJ_G0022263.1 mouse_genomes_project 15 96431427 96446314 - Ddx23 protein_coding retained_intron MGP_AJ_T0042433.1 MGP_AJ_G0022263.1 mouse_genomes_project 15 96431440 96446311 - Ddx23 protein_coding retained_intron MGP_AJ_T0042434.1 MGP_AJ_G0022263.1 mouse_genomes_project 15 96435451 96446314 - Ddx23 protein_coding retained_intron MGP_AJ_T0042435.1 MGP_AJ_G0022263.1 mouse_genomes_project 15 96440088 96446288 - MGP_AJ_P0042435 Ddx23 protein_coding protein_coding MGP_AJ_T0042436.1 MGP_AJ_G0022263.1 mouse_genomes_project 15 96441306 96446319 - Ddx23 protein_coding retained_intron MGP_AJ_T0042730.1 MGP_AJ_G0022374.1 mouse_genomes_project 15 100466733 100468826 + MGP_AJ_P0042730 Sp1 protein_coding protein_coding MGP_AJ_T0042731.1 MGP_AJ_G0022374.1 mouse_genomes_project 15 100466918 100494422 + MGP_AJ_P0042731 Sp1 protein_coding protein_coding MGP_AJ_T0042732.1 MGP_AJ_G0022374.1 mouse_genomes_project 15 100466923 100494422 + MGP_AJ_P0042732 Sp1 protein_coding protein_coding MGP_AJ_T0042733.1 MGP_AJ_G0022374.1 mouse_genomes_project 15 100466970 100498150 + MGP_AJ_P0042733 Sp1 protein_coding protein_coding MGP_AJ_T0042734.1 MGP_AJ_G0022374.1 mouse_genomes_project 15 100467345 100469208 + MGP_AJ_P0042734 Sp1 protein_coding protein_coding MGP_AJ_T0042735.1 MGP_AJ_G0022374.1 mouse_genomes_project 15 100467859 100468826 + MGP_AJ_P0042735 Sp1 protein_coding protein_coding MGP_AJ_T0042736.1 MGP_AJ_G0022374.1 mouse_genomes_project 15 100468178 100468976 + MGP_AJ_P0042736 Sp1 protein_coding protein_coding MGP_AJ_T0042737.1 MGP_AJ_G0022374.1 mouse_genomes_project 15 100491640 100492561 + Sp1 protein_coding processed_transcript MGP_AJ_T0041768.1 MGP_AJ_G0022062.1 mouse_genomes_project 15 78161463 78189419 + MGP_AJ_P0041768 Grap2 protein_coding protein_coding MGP_AJ_T0042400.1 MGP_AJ_G0022251.1 mouse_genomes_project 15 96087043 96088003 - MGP_AJ_P0042400 Olfr285 protein_coding protein_coding MGP_AJ_T0041114.1 MGP_AJ_G0021877.1 mouse_genomes_project 15 70198271 70202091 + MGP_AJ_P0041114 Chrac1 protein_coding protein_coding MGP_AJ_T0041115.1 MGP_AJ_G0021877.1 mouse_genomes_project 15 70198271 70207871 + MGP_AJ_P0041115 Chrac1 protein_coding protein_coding MGP_AJ_T0041116.1 MGP_AJ_G0021877.1 mouse_genomes_project 15 70198291 70202790 + Chrac1 protein_coding retained_intron MGP_AJ_T0041941.1 MGP_AJ_G0022116.1 mouse_genomes_project 15 80693992 80706264 + Serhl protein_coding processed_transcript MGP_AJ_T0041942.1 MGP_AJ_G0022116.1 mouse_genomes_project 15 80697369 80706494 + MGP_AJ_P0041942 Serhl protein_coding protein_coding MGP_AJ_T0041943.1 MGP_AJ_G0022116.1 mouse_genomes_project 15 80701533 80707503 + Serhl protein_coding processed_transcript MGP_AJ_T0041944.1 MGP_AJ_G0022116.1 mouse_genomes_project 15 80704739 80707539 + Serhl protein_coding retained_intron MGP_AJ_T0041945.1 MGP_AJ_G0022116.1 mouse_genomes_project 15 80704765 80707564 + Serhl protein_coding retained_intron MGP_AJ_T0041946.1 MGP_AJ_G0022116.1 mouse_genomes_project 15 80704770 80721095 + MGP_AJ_P0041946 Serhl protein_coding protein_coding MGP_AJ_T0041947.1 MGP_AJ_G0022116.1 mouse_genomes_project 15 80704770 80707121 + MGP_AJ_P0041947 Serhl protein_coding protein_coding MGP_AJ_T0041948.1 MGP_AJ_G0022116.1 mouse_genomes_project 15 80704820 80721077 + MGP_AJ_P0041948 Serhl protein_coding protein_coding MGP_AJ_T0041949.1 MGP_AJ_G0022116.1 mouse_genomes_project 15 80706061 80707699 + Serhl protein_coding retained_intron MGP_AJ_T0041950.1 MGP_AJ_G0022116.1 mouse_genomes_project 15 80708186 80729713 + Serhl protein_coding retained_intron MGP_AJ_T0041951.1 MGP_AJ_G0022116.1 mouse_genomes_project 15 80708408 80712829 + Serhl protein_coding retained_intron MGP_AJ_T0041952.1 MGP_AJ_G0022116.1 mouse_genomes_project 15 80708410 80710279 + Serhl protein_coding retained_intron MGP_AJ_T0041953.1 MGP_AJ_G0022116.1 mouse_genomes_project 15 80708850 80728462 + MGP_AJ_P0041953 Serhl protein_coding nonsense_mediated_decay MGP_AJ_T0042304.1 MGP_AJ_G0022219.1 mouse_genomes_project 15 92277728 92303215 + MGP_AJ_P0042304 Irak4 protein_coding protein_coding MGP_AJ_T0042305.1 MGP_AJ_G0022219.1 mouse_genomes_project 15 92277738 92291674 + Irak4 protein_coding retained_intron MGP_AJ_T0042306.1 MGP_AJ_G0022219.1 mouse_genomes_project 15 92277757 92316479 + MGP_AJ_P0042306 Irak4 protein_coding protein_coding MGP_AJ_T0042307.1 MGP_AJ_G0022219.1 mouse_genomes_project 15 92277814 92301948 + MGP_AJ_P0042307 Irak4 protein_coding unknown_likely_coding MGP_AJ_T0042713.1 MGP_AJ_G0022370.1 mouse_genomes_project 15 100386007 100391469 + Pfdn5 protein_coding retained_intron MGP_AJ_T0042714.1 MGP_AJ_G0022370.1 mouse_genomes_project 15 100386028 100391410 + MGP_AJ_P0042714 Pfdn5 protein_coding protein_coding MGP_AJ_T0042715.1 MGP_AJ_G0022370.1 mouse_genomes_project 15 100386028 100391547 + MGP_AJ_P0042715 Pfdn5 protein_coding nonsense_mediated_decay MGP_AJ_T0042716.1 MGP_AJ_G0022370.1 mouse_genomes_project 15 100386028 100391556 + MGP_AJ_P0042716 Pfdn5 protein_coding protein_coding MGP_AJ_T0042717.1 MGP_AJ_G0022370.1 mouse_genomes_project 15 100386230 100391523 + MGP_AJ_P0042717 Pfdn5 protein_coding protein_coding MGP_AJ_T0041367.1 MGP_AJ_G0021945.1 mouse_genomes_project 15 73639283 73642362 + MGP_AJ_P0041367 Maf1 protein_coding protein_coding MGP_AJ_T0041368.1 MGP_AJ_G0021945.1 mouse_genomes_project 15 73639283 73642363 + MGP_AJ_P0041368 Maf1 protein_coding protein_coding MGP_AJ_T0041369.1 MGP_AJ_G0021945.1 mouse_genomes_project 15 73639295 73642363 + MGP_AJ_P0041369 Maf1 protein_coding protein_coding MGP_AJ_T0041370.1 MGP_AJ_G0021945.1 mouse_genomes_project 15 73639298 73640996 + Maf1 protein_coding retained_intron MGP_AJ_T0041371.1 MGP_AJ_G0021945.1 mouse_genomes_project 15 73639316 73640437 + Maf1 protein_coding processed_transcript MGP_AJ_T0041372.1 MGP_AJ_G0021945.1 mouse_genomes_project 15 73639316 73642370 + MGP_AJ_P0041372 Maf1 protein_coding protein_coding MGP_AJ_T0041373.1 MGP_AJ_G0021945.1 mouse_genomes_project 15 73639342 73640057 + Maf1 protein_coding retained_intron MGP_AJ_T0041374.1 MGP_AJ_G0021945.1 mouse_genomes_project 15 73639398 73640889 + Maf1 protein_coding retained_intron MGP_AJ_T0041375.1 MGP_AJ_G0021945.1 mouse_genomes_project 15 73639995 73641176 + MGP_AJ_P0041375 Maf1 protein_coding protein_coding MGP_AJ_T0041376.1 MGP_AJ_G0021945.1 mouse_genomes_project 15 73640023 73640890 + Maf1 protein_coding retained_intron MGP_AJ_T0041377.1 MGP_AJ_G0021945.1 mouse_genomes_project 15 73640759 73641981 + Maf1 protein_coding retained_intron MGP_AJ_T0041378.1 MGP_AJ_G0021945.1 mouse_genomes_project 15 73640883 73642016 + Maf1 protein_coding retained_intron MGP_AJ_T0041379.1 MGP_AJ_G0021945.1 mouse_genomes_project 15 73641090 73642063 + Maf1 protein_coding retained_intron MGP_AJ_T0041380.1 MGP_AJ_G0021945.1 mouse_genomes_project 15 73641404 73642105 + MGP_AJ_P0041380 Maf1 protein_coding protein_coding MGP_AJ_T0042798.1 MGP_AJ_G0022388.1 mouse_genomes_project 15 101033119 101036401 + MGP_AJ_P0042798 Hoxc11 protein_coding protein_coding MGP_AJ_T0042094.1 MGP_AJ_G0022164.1 mouse_genomes_project 15 86316625 86317993 + MGP_AJ_P0042094 Zdhhc25 protein_coding protein_coding MGP_AJ_T0040528.1 MGP_AJ_G0021672.1 mouse_genomes_project 15 6058165 6117331 + MGP_AJ_P0040528 Lmbrd2 protein_coding protein_coding MGP_AJ_T0003604.1 MGP_AJ_G0003264.1 mouse_genomes_project 15 63751410 63756679 - Gm17140 antisense antisense MGP_AJ_T0010033.1 MGP_AJ_G0008155.1 mouse_genomes_project 15 26792061 26792135 - Mir3964 miRNA miRNA MGP_AJ_T0010057.1 MGP_AJ_G0008179.1 mouse_genomes_project 15 75719186 75719248 - Mir7676-2 miRNA miRNA MGP_AJ_T0040956.1 MGP_AJ_G0021824.1 mouse_genomes_project 15 54896992 54921892 + MGP_AJ_P0040956 Fam83a protein_coding protein_coding MGP_AJ_T0040957.1 MGP_AJ_G0021824.1 mouse_genomes_project 15 54897483 54907092 + MGP_AJ_P0040957 Fam83a protein_coding protein_coding MGP_AJ_T0040958.1 MGP_AJ_G0021824.1 mouse_genomes_project 15 54913041 54920930 + Fam83a protein_coding processed_transcript MGP_AJ_T0040853.1 MGP_AJ_G0021784.1 mouse_genomes_project 15 39997957 40148891 - MGP_AJ_P0040853 Rspo2 protein_coding protein_coding MGP_AJ_T0042682.1 MGP_AJ_G0022358.1 mouse_genomes_project 15 100087497 100091304 + MGP_AJ_P0042682 Krt18 protein_coding protein_coding MGP_AJ_T0040722.1 MGP_AJ_G0021740.1 mouse_genomes_project 15 31501861 31504269 - Rpl30 protein_coding processed_transcript MGP_AJ_T0040723.1 MGP_AJ_G0021740.1 mouse_genomes_project 15 31501861 31504521 - Rpl30 protein_coding retained_intron MGP_AJ_T0040724.1 MGP_AJ_G0021740.1 mouse_genomes_project 15 31501861 31505001 - MGP_AJ_P0040724 Rpl30 protein_coding protein_coding MGP_AJ_T0040725.1 MGP_AJ_G0021740.1 mouse_genomes_project 15 31501866 31504583 - MGP_AJ_P0040725 Rpl30 protein_coding protein_coding MGP_AJ_T0040726.1 MGP_AJ_G0021740.1 mouse_genomes_project 15 31501931 31503022 - Rpl30 protein_coding retained_intron MGP_AJ_T0040727.1 MGP_AJ_G0021740.1 mouse_genomes_project 15 31503881 31504620 - Rpl30 protein_coding processed_transcript MGP_AJ_T0041915.1 MGP_AJ_G0022102.1 mouse_genomes_project 15 79903606 79914072 - MGP_AJ_P0041915 Naga protein_coding protein_coding MGP_AJ_T0040834.1 MGP_AJ_G0021776.1 mouse_genomes_project 15 36703080 36717779 + MGP_AJ_P0040834 Dcstamp protein_coding protein_coding MGP_AJ_T0041846.1 MGP_AJ_G0022079.1 mouse_genomes_project 15 79260483 79285579 - MGP_AJ_P0041846 Rangap1 protein_coding protein_coding MGP_AJ_T0041847.1 MGP_AJ_G0022079.1 mouse_genomes_project 15 79260483 79285579 - MGP_AJ_P0041847 Rangap1 protein_coding protein_coding MGP_AJ_T0041848.1 MGP_AJ_G0022079.1 mouse_genomes_project 15 79260852 79285526 - MGP_AJ_P0041848 Rangap1 protein_coding protein_coding MGP_AJ_T0040939.1 MGP_AJ_G0021818.1 mouse_genomes_project 15 52573414 52842419 - MGP_AJ_P0040939 Sntb1 protein_coding protein_coding MGP_AJ_T0040940.1 MGP_AJ_G0021818.1 mouse_genomes_project 15 52718091 52842192 - MGP_AJ_P0040940 Sntb1 protein_coding protein_coding MGP_AJ_T0040941.1 MGP_AJ_G0021818.1 mouse_genomes_project 15 52719065 52841780 - Sntb1 protein_coding processed_transcript MGP_AJ_T0041157.1 MGP_AJ_G0021887.1 mouse_genomes_project 15 71729992 71760030 - MGP_AJ_P0041157 Mroh4 protein_coding protein_coding MGP_AJ_T0041158.1 MGP_AJ_G0021887.1 mouse_genomes_project 15 71729992 71758526 - MGP_AJ_P0041158 Mroh4 protein_coding protein_coding MGP_AJ_T0041159.1 MGP_AJ_G0021887.1 mouse_genomes_project 15 71730366 71735976 - MGP_AJ_P0041159 Mroh4 protein_coding protein_coding MGP_AJ_T0041160.1 MGP_AJ_G0021887.1 mouse_genomes_project 15 71730378 71732192 - Mroh4 protein_coding retained_intron MGP_AJ_T0041161.1 MGP_AJ_G0021887.1 mouse_genomes_project 15 71740101 71752022 - MGP_AJ_P0041161 Mroh4 protein_coding protein_coding MGP_AJ_T0041162.1 MGP_AJ_G0021887.1 mouse_genomes_project 15 71755257 71759975 - Mroh4 protein_coding processed_transcript MGP_AJ_T0000940.1 MGP_AJ_G0000874.1 mouse_genomes_project 15 65344479 65347401 - TEC TEC MGP_AJ_T0041270.1 MGP_AJ_G0021924.1 mouse_genomes_project 15 73206616 73212323 - MGP_AJ_P0041270 Tsta3 protein_coding protein_coding MGP_AJ_T0003642.1 MGP_AJ_G0003294.1 mouse_genomes_project 15 101183686 101186521 + Gm10830 antisense antisense MGP_AJ_T0042705.1 MGP_AJ_G0022367.1 mouse_genomes_project 15 100294387 100316890 - MGP_AJ_P0042705 Rarg protein_coding protein_coding MGP_AJ_T0042706.1 MGP_AJ_G0022367.1 mouse_genomes_project 15 100294389 100305913 - MGP_AJ_P0042706 Rarg protein_coding protein_coding MGP_AJ_T0042707.1 MGP_AJ_G0022367.1 mouse_genomes_project 15 100299439 100316721 - MGP_AJ_P0042707 Rarg protein_coding protein_coding MGP_AJ_T0042708.1 MGP_AJ_G0022367.1 mouse_genomes_project 15 100301371 100303022 - Rarg protein_coding processed_transcript MGP_AJ_T0042709.1 MGP_AJ_G0022367.1 mouse_genomes_project 15 100301375 100304645 - Rarg protein_coding processed_transcript MGP_AJ_T0042710.1 MGP_AJ_G0022367.1 mouse_genomes_project 15 100301375 100309713 - Rarg protein_coding processed_transcript MGP_AJ_T0040820.1 MGP_AJ_G0021769.1 mouse_genomes_project 15 35748229 35779755 + MGP_AJ_P0040820 Atp6v1c1 protein_coding protein_coding MGP_AJ_T0041906.1 MGP_AJ_G0022096.1 mouse_genomes_project 15 79774184 79780105 - MGP_AJ_P0041906 Shisa8 protein_coding protein_coding MGP_AJ_T0040512.1 MGP_AJ_G0021669.1 mouse_genomes_project 15 5917192 5979179 + MGP_AJ_P0040512 Ranbp3l protein_coding protein_coding MGP_AJ_T0040513.1 MGP_AJ_G0021669.1 mouse_genomes_project 15 5917192 5950526 + MGP_AJ_P0040513 Ranbp3l protein_coding protein_coding MGP_AJ_T0040514.1 MGP_AJ_G0021669.1 mouse_genomes_project 15 5917192 5977635 + MGP_AJ_P0040514 Ranbp3l protein_coding unknown_likely_coding MGP_AJ_T0042337.1 MGP_AJ_G0022237.1 mouse_genomes_project 15 95481541 95506391 - MGP_AJ_P0042337 Rapgef3 protein_coding protein_coding MGP_AJ_T0042338.1 MGP_AJ_G0022237.1 mouse_genomes_project 15 95481724 95506343 - MGP_AJ_P0042338 Rapgef3 protein_coding protein_coding MGP_AJ_T0042339.1 MGP_AJ_G0022237.1 mouse_genomes_project 15 95481727 95506209 - MGP_AJ_P0042339 Rapgef3 protein_coding protein_coding MGP_AJ_T0042340.1 MGP_AJ_G0022237.1 mouse_genomes_project 15 95481787 95505607 - MGP_AJ_P0042340 Rapgef3 protein_coding protein_coding MGP_AJ_T0042341.1 MGP_AJ_G0022237.1 mouse_genomes_project 15 95481935 95506211 - MGP_AJ_P0042341 Rapgef3 protein_coding protein_coding MGP_AJ_T0042342.1 MGP_AJ_G0022237.1 mouse_genomes_project 15 95482052 95505965 - MGP_AJ_P0042342 Rapgef3 protein_coding nonsense_mediated_decay MGP_AJ_T0042343.1 MGP_AJ_G0022237.1 mouse_genomes_project 15 95482135 95485633 - Rapgef3 protein_coding retained_intron MGP_AJ_T0042344.1 MGP_AJ_G0022237.1 mouse_genomes_project 15 95483291 95506132 - Rapgef3 protein_coding retained_intron MGP_AJ_T0042345.1 MGP_AJ_G0022237.1 mouse_genomes_project 15 95486467 95487465 - Rapgef3 protein_coding retained_intron MGP_AJ_T0042346.1 MGP_AJ_G0022237.1 mouse_genomes_project 15 95487117 95494555 - Rapgef3 protein_coding retained_intron MGP_AJ_T0042348.1 MGP_AJ_G0022237.1 mouse_genomes_project 15 95495949 95497478 - Rapgef3 protein_coding processed_transcript MGP_AJ_T0042349.1 MGP_AJ_G0022237.1 mouse_genomes_project 15 95496411 95505591 - MGP_AJ_P0042349 Rapgef3 protein_coding nonsense_mediated_decay MGP_AJ_T0042350.1 MGP_AJ_G0022237.1 mouse_genomes_project 15 95496416 95498931 - Rapgef3 protein_coding processed_transcript MGP_AJ_T0042351.1 MGP_AJ_G0022237.1 mouse_genomes_project 15 95497726 95505809 - MGP_AJ_P0042351 Rapgef3 protein_coding protein_coding MGP_AJ_T0042352.1 MGP_AJ_G0022237.1 mouse_genomes_project 15 95497749 95498906 - Rapgef3 protein_coding retained_intron MGP_AJ_T0042353.1 MGP_AJ_G0022237.1 mouse_genomes_project 15 95505403 95506517 - MGP_AJ_P0042353 Rapgef3 protein_coding protein_coding MGP_AJ_T0100848.1 MGP_AJ_G0038814.1 mouse_genomes_project 15 73041610 73041741 + Gm23747 snoRNA snoRNA MGP_AJ_T0003630.1 MGP_AJ_G0003283.1 mouse_genomes_project 15 96368806 96369905 + Gm29331 antisense antisense MGP_AJ_T0013105.1 MGP_AJ_G0011200.1 mouse_genomes_project 15 88288660 88289143 + processed_pseudogene processed_pseudogene MGP_AJ_T0040763.1 MGP_AJ_G0021756.1 mouse_genomes_project 15 33597110 33648428 - MGP_AJ_P0040763 Snx31 protein_coding protein_coding MGP_AJ_T0040764.1 MGP_AJ_G0021756.1 mouse_genomes_project 15 33597460 33648423 - MGP_AJ_P0040764 Snx31 protein_coding protein_coding MGP_AJ_T0040765.1 MGP_AJ_G0021756.1 mouse_genomes_project 15 33630405 33638690 - Snx31 protein_coding processed_transcript MGP_AJ_T0040766.1 MGP_AJ_G0021756.1 mouse_genomes_project 15 33630405 33639148 - MGP_AJ_P0040766 Snx31 protein_coding protein_coding MGP_AJ_T0041751.1 MGP_AJ_G0022054.1 mouse_genomes_project 15 77623425 77645485 + MGP_AJ_P0041751 Syngr1 protein_coding protein_coding MGP_AJ_T0041752.1 MGP_AJ_G0022054.1 mouse_genomes_project 15 77623435 77651545 + MGP_AJ_P0041752 Syngr1 protein_coding protein_coding MGP_AJ_T0041753.1 MGP_AJ_G0022054.1 mouse_genomes_project 15 77629913 77643706 + MGP_AJ_P0041753 Syngr1 protein_coding protein_coding MGP_AJ_T0041754.1 MGP_AJ_G0022054.1 mouse_genomes_project 15 77647516 77648309 + MGP_AJ_P0041754 Syngr1 protein_coding protein_coding MGP_AJ_T0042537.1 MGP_AJ_G0022301.1 mouse_genomes_project 15 97550857 97600516 - MGP_AJ_P0042537 Cers5 protein_coding protein_coding MGP_AJ_T0042538.1 MGP_AJ_G0022301.1 mouse_genomes_project 15 97551287 97600519 - MGP_AJ_P0042538 Cers5 protein_coding nonsense_mediated_decay MGP_AJ_T0042539.1 MGP_AJ_G0022301.1 mouse_genomes_project 15 97551594 97600655 - MGP_AJ_P0042539 Cers5 protein_coding protein_coding MGP_AJ_T0042540.1 MGP_AJ_G0022301.1 mouse_genomes_project 15 97553312 97564531 - MGP_AJ_P0042540 Cers5 protein_coding protein_coding MGP_AJ_T0042541.1 MGP_AJ_G0022301.1 mouse_genomes_project 15 97555381 97600939 - MGP_AJ_P0042541 Cers5 protein_coding protein_coding MGP_AJ_T0042542.1 MGP_AJ_G0022301.1 mouse_genomes_project 15 97561906 97600147 - MGP_AJ_P0042542 Cers5 protein_coding protein_coding MGP_AJ_T0042131.1 MGP_AJ_G0022176.1 mouse_genomes_project 15 86815894 86845300 - MGP_AJ_P0042131 Tubgcp6 protein_coding protein_coding MGP_AJ_T0042132.1 MGP_AJ_G0022176.1 mouse_genomes_project 15 86816635 86818636 - Tubgcp6 protein_coding retained_intron MGP_AJ_T0042133.1 MGP_AJ_G0022176.1 mouse_genomes_project 15 86817947 86845099 - MGP_AJ_P0042133 Tubgcp6 protein_coding protein_coding MGP_AJ_T0042134.1 MGP_AJ_G0022176.1 mouse_genomes_project 15 86817947 86820141 - MGP_AJ_P0042134 Tubgcp6 protein_coding nonsense_mediated_decay MGP_AJ_T0042135.1 MGP_AJ_G0022176.1 mouse_genomes_project 15 86817971 86819081 - Tubgcp6 protein_coding retained_intron MGP_AJ_T0042136.1 MGP_AJ_G0022176.1 mouse_genomes_project 15 86818230 86818817 - Tubgcp6 protein_coding retained_intron MGP_AJ_T0042137.1 MGP_AJ_G0022176.1 mouse_genomes_project 15 86818254 86819552 - MGP_AJ_P0042137 Tubgcp6 protein_coding nonsense_mediated_decay MGP_AJ_T0042138.1 MGP_AJ_G0022176.1 mouse_genomes_project 15 86818549 86819718 - Tubgcp6 protein_coding retained_intron MGP_AJ_T0042139.1 MGP_AJ_G0022176.1 mouse_genomes_project 15 86819013 86819910 - MGP_AJ_P0042139 Tubgcp6 protein_coding nonsense_mediated_decay MGP_AJ_T0042140.1 MGP_AJ_G0022176.1 mouse_genomes_project 15 86821753 86824967 - MGP_AJ_P0042140 Tubgcp6 protein_coding nonsense_mediated_decay MGP_AJ_T0013110.1 MGP_AJ_G0011205.1 mouse_genomes_project 15 89556390 89556927 + processed_pseudogene processed_pseudogene MGP_AJ_T0041279.1 MGP_AJ_G0021928.1 mouse_genomes_project 15 73276198 73278254 + Mapk15 protein_coding processed_transcript MGP_AJ_T0041280.1 MGP_AJ_G0021928.1 mouse_genomes_project 15 73276198 73281582 + MGP_AJ_P0041280 Mapk15 protein_coding protein_coding MGP_AJ_T0041281.1 MGP_AJ_G0021928.1 mouse_genomes_project 15 73278368 73281582 + Mapk15 protein_coding retained_intron MGP_AJ_T0041282.1 MGP_AJ_G0021928.1 mouse_genomes_project 15 73279142 73281582 + Mapk15 protein_coding processed_transcript MGP_AJ_T0099551.1 MGP_AJ_G0037517.1 mouse_genomes_project 15 52191286 52191348 - Gm26296 snRNA snRNA MGP_AJ_T0041166.1 MGP_AJ_G0021890.1 mouse_genomes_project 15 71838729 71840960 + MGP_AJ_P0041166 Psca protein_coding protein_coding MGP_AJ_T0017481.1 MGP_AJ_G0015285.1 mouse_genomes_project 15 97057564 97068637 + 1700120C14Rik processed_transcript antisense MGP_AJ_T0017482.1 MGP_AJ_G0015285.1 mouse_genomes_project 15 97057612 97068377 + 1700120C14Rik processed_transcript antisense MGP_AJ_T0017483.1 MGP_AJ_G0015285.1 mouse_genomes_project 15 97057614 97059744 + 1700120C14Rik processed_transcript retained_intron MGP_AJ_T0041469.1 MGP_AJ_G0021969.1 mouse_genomes_project 15 74002333 74009333 - MGP_AJ_P0041469 Lrrc24 protein_coding protein_coding MGP_AJ_T0041470.1 MGP_AJ_G0021969.1 mouse_genomes_project 15 74003264 74005473 - Lrrc24 protein_coding retained_intron MGP_AJ_T0041471.1 MGP_AJ_G0021969.1 mouse_genomes_project 15 74006767 74009319 - Lrrc24 protein_coding retained_intron MGP_AJ_T0041472.1 MGP_AJ_G0021969.1 mouse_genomes_project 15 74008621 74010996 - MGP_AJ_P0041472 Lrrc24 protein_coding protein_coding MGP_AJ_T0041484.1 MGP_AJ_G0021972.1 mouse_genomes_project 15 74168943 74182539 + MGP_AJ_P0041484 Zfp7 protein_coding protein_coding MGP_AJ_T0040721.1 MGP_AJ_G0021739.1 mouse_genomes_project 15 31407817 31416089 - MGP_AJ_P0040721 9430069I07Rik protein_coding protein_coding MGP_AJ_T0042073.1 MGP_AJ_G0022158.1 mouse_genomes_project 15 83549205 83562454 + MGP_AJ_P0042073 Trmu protein_coding nonsense_mediated_decay MGP_AJ_T0042074.1 MGP_AJ_G0022158.1 mouse_genomes_project 15 83549213 83567214 + MGP_AJ_P0042074 Trmu protein_coding protein_coding MGP_AJ_T0042075.1 MGP_AJ_G0022158.1 mouse_genomes_project 15 83549274 83552740 + MGP_AJ_P0042075 Trmu protein_coding nonsense_mediated_decay MGP_AJ_T0042076.1 MGP_AJ_G0022158.1 mouse_genomes_project 15 83549307 83563810 + Trmu protein_coding retained_intron MGP_AJ_T0042077.1 MGP_AJ_G0022158.1 mouse_genomes_project 15 83555060 83566248 + MGP_AJ_P0042077 Trmu protein_coding nonsense_mediated_decay MGP_AJ_T0042078.1 MGP_AJ_G0022158.1 mouse_genomes_project 15 83562432 83564327 + Trmu protein_coding retained_intron MGP_AJ_T0042079.1 MGP_AJ_G0022158.1 mouse_genomes_project 15 83564057 83567214 + Trmu protein_coding processed_transcript MGP_AJ_T0042080.1 MGP_AJ_G0022158.1 mouse_genomes_project 15 83564601 83566881 + Trmu protein_coding retained_intron MGP_AJ_T0042081.1 MGP_AJ_G0022158.1 mouse_genomes_project 15 83564731 83567216 + Trmu protein_coding retained_intron MGP_AJ_T0042181.1 MGP_AJ_G0022187.1 mouse_genomes_project 15 87082941 87100049 + MGP_AJ_P0042181 Ncaph2 protein_coding protein_coding MGP_AJ_T0042182.1 MGP_AJ_G0022187.1 mouse_genomes_project 15 87082958 87100049 + MGP_AJ_P0042182 Ncaph2 protein_coding protein_coding MGP_AJ_T0042183.1 MGP_AJ_G0022187.1 mouse_genomes_project 15 87082958 87100049 + MGP_AJ_P0042183 Ncaph2 protein_coding protein_coding MGP_AJ_T0042184.1 MGP_AJ_G0022187.1 mouse_genomes_project 15 87082985 87100049 + MGP_AJ_P0042184 Ncaph2 protein_coding nonsense_mediated_decay MGP_AJ_T0042185.1 MGP_AJ_G0022187.1 mouse_genomes_project 15 87083027 87091103 + Ncaph2 protein_coding retained_intron MGP_AJ_T0042186.1 MGP_AJ_G0022187.1 mouse_genomes_project 15 87083043 87091127 + Ncaph2 protein_coding retained_intron MGP_AJ_T0042187.1 MGP_AJ_G0022187.1 mouse_genomes_project 15 87083136 87092554 + Ncaph2 protein_coding retained_intron MGP_AJ_T0042188.1 MGP_AJ_G0022187.1 mouse_genomes_project 15 87096914 87097898 + Ncaph2 protein_coding retained_intron MGP_AJ_T0042189.1 MGP_AJ_G0022187.1 mouse_genomes_project 15 87097100 87098463 + Ncaph2 protein_coding retained_intron MGP_AJ_T0042190.1 MGP_AJ_G0022187.1 mouse_genomes_project 15 87097255 87098412 + Ncaph2 protein_coding retained_intron MGP_AJ_T0042191.1 MGP_AJ_G0022187.1 mouse_genomes_project 15 87097520 87098155 + Ncaph2 protein_coding retained_intron MGP_AJ_T0042192.1 MGP_AJ_G0022187.1 mouse_genomes_project 15 87097869 87098747 + Ncaph2 protein_coding retained_intron MGP_AJ_T0042193.1 MGP_AJ_G0022187.1 mouse_genomes_project 15 87097975 87098786 + Ncaph2 protein_coding retained_intron MGP_AJ_T0017468.1 MGP_AJ_G0015278.1 mouse_genomes_project 15 75552448 75576993 + A730060N03Rik processed_transcript processed_transcript MGP_AJ_T0040421.1 MGP_AJ_G0021643.1 mouse_genomes_project 15 859187 873427 - MGP_AJ_P0040421 Fbxo4 protein_coding protein_coding MGP_AJ_T0040422.1 MGP_AJ_G0021643.1 mouse_genomes_project 15 862884 866771 - Fbxo4 protein_coding processed_transcript MGP_AJ_T0040423.1 MGP_AJ_G0021643.1 mouse_genomes_project 15 865194 865893 - Fbxo4 protein_coding retained_intron MGP_AJ_T0041570.1 MGP_AJ_G0022005.1 mouse_genomes_project 15 75938025 75966962 - MGP_AJ_P0041570 Tmprss6 protein_coding protein_coding MGP_AJ_T0042199.1 MGP_AJ_G0022192.1 mouse_genomes_project 15 87118163 87140435 - MGP_AJ_P0042199 Syce3 protein_coding protein_coding MGP_AJ_T0042200.1 MGP_AJ_G0022192.1 mouse_genomes_project 15 87118163 87140675 - MGP_AJ_P0042200 Syce3 protein_coding protein_coding MGP_AJ_T0040567.1 MGP_AJ_G0021682.1 mouse_genomes_project 15 7407367 7418917 - MGP_AJ_P0040567 Brix1 protein_coding protein_coding MGP_AJ_T0040568.1 MGP_AJ_G0021682.1 mouse_genomes_project 15 7411394 7418360 - MGP_AJ_P0040568 Brix1 protein_coding protein_coding MGP_AJ_T0040569.1 MGP_AJ_G0021682.1 mouse_genomes_project 15 7411775 7418879 - MGP_AJ_P0040569 Brix1 protein_coding protein_coding MGP_AJ_T0040570.1 MGP_AJ_G0021682.1 mouse_genomes_project 15 7412214 7418857 - MGP_AJ_P0040570 Brix1 protein_coding nonsense_mediated_decay MGP_AJ_T0040448.1 MGP_AJ_G0021655.1 mouse_genomes_project 15 2123866 2159669 - Ptger4 protein_coding processed_transcript MGP_AJ_T0040449.1 MGP_AJ_G0021655.1 mouse_genomes_project 15 2150357 2161131 - MGP_AJ_P0040449 Ptger4 protein_coding protein_coding MGP_AJ_T0040450.1 MGP_AJ_G0021655.1 mouse_genomes_project 15 2150357 2161146 - MGP_AJ_P0040450 Ptger4 protein_coding protein_coding MGP_AJ_T0041021.1 MGP_AJ_G0021855.1 mouse_genomes_project 15 61090108 61322212 - MGP_AJ_P0041021 Asap1 protein_coding unknown_likely_coding MGP_AJ_T0041022.1 MGP_AJ_G0021855.1 mouse_genomes_project 15 61091791 61322064 - MGP_AJ_P0041022 Asap1 protein_coding protein_coding MGP_AJ_T0041023.1 MGP_AJ_G0021855.1 mouse_genomes_project 15 61091794 61394144 - MGP_AJ_P0041023 Asap1 protein_coding protein_coding MGP_AJ_T0041024.1 MGP_AJ_G0021855.1 mouse_genomes_project 15 61091796 61393981 - MGP_AJ_P0041024 Asap1 protein_coding protein_coding MGP_AJ_T0041025.1 MGP_AJ_G0021855.1 mouse_genomes_project 15 61091796 61394144 - MGP_AJ_P0041025 Asap1 protein_coding protein_coding MGP_AJ_T0041026.1 MGP_AJ_G0021855.1 mouse_genomes_project 15 61091796 61360963 - MGP_AJ_P0041026 Asap1 protein_coding protein_coding MGP_AJ_T0041027.1 MGP_AJ_G0021855.1 mouse_genomes_project 15 61091796 61394144 - MGP_AJ_P0041027 Asap1 protein_coding protein_coding MGP_AJ_T0041028.1 MGP_AJ_G0021855.1 mouse_genomes_project 15 61091796 61394144 - MGP_AJ_P0041028 Asap1 protein_coding protein_coding MGP_AJ_T0041029.1 MGP_AJ_G0021855.1 mouse_genomes_project 15 61091874 61393962 - MGP_AJ_P0041029 Asap1 protein_coding protein_coding MGP_AJ_T0041030.1 MGP_AJ_G0021855.1 mouse_genomes_project 15 61092702 61360963 - MGP_AJ_P0041030 Asap1 protein_coding protein_coding MGP_AJ_T0041031.1 MGP_AJ_G0021855.1 mouse_genomes_project 15 61092702 61360963 - MGP_AJ_P0041031 Asap1 protein_coding protein_coding MGP_AJ_T0041032.1 MGP_AJ_G0021855.1 mouse_genomes_project 15 61097383 61105972 - Asap1 protein_coding retained_intron MGP_AJ_T0041033.1 MGP_AJ_G0021855.1 mouse_genomes_project 15 61123442 61126175 - Asap1 protein_coding processed_transcript MGP_AJ_T0041034.1 MGP_AJ_G0021855.1 mouse_genomes_project 15 61123495 61127211 - Asap1 protein_coding retained_intron MGP_AJ_T0041035.1 MGP_AJ_G0021855.1 mouse_genomes_project 15 61162357 61212587 - MGP_AJ_P0041035 Asap1 protein_coding protein_coding MGP_AJ_T0041036.1 MGP_AJ_G0021855.1 mouse_genomes_project 15 61176604 61393957 - Asap1 protein_coding processed_transcript MGP_AJ_T0041037.1 MGP_AJ_G0021855.1 mouse_genomes_project 15 61194427 61322098 - Asap1 protein_coding retained_intron MGP_AJ_T0041038.1 MGP_AJ_G0021855.1 mouse_genomes_project 15 61194921 61321114 - Asap1 protein_coding processed_transcript MGP_AJ_T0041039.1 MGP_AJ_G0021855.1 mouse_genomes_project 15 61212592 61323648 - MGP_AJ_P0041039 Asap1 protein_coding protein_coding MGP_AJ_T0010052.1 MGP_AJ_G0008174.1 mouse_genomes_project 15 73348829 73348890 - Mir6952 miRNA miRNA MGP_AJ_T0041882.1 MGP_AJ_G0022089.1 mouse_genomes_project 15 79544853 79545889 + MGP_AJ_P0041882 1700029P11Rik protein_coding protein_coding MGP_AJ_T0041285.1 MGP_AJ_G0021930.1 mouse_genomes_project 15 73292310 73319126 + MGP_AJ_P0041285 protein_coding protein_coding MGP_AJ_T0041286.1 MGP_AJ_G0021930.1 mouse_genomes_project 15 73297011 73318605 + MGP_AJ_P0041286 protein_coding protein_coding MGP_AJ_T0041287.1 MGP_AJ_G0021930.1 mouse_genomes_project 15 73318138 73321731 + protein_coding processed_transcript MGP_AJ_T0041288.1 MGP_AJ_G0021930.1 mouse_genomes_project 15 73318837 73330113 + protein_coding processed_transcript MGP_AJ_T0041289.1 MGP_AJ_G0021930.1 mouse_genomes_project 15 73320532 73321792 + protein_coding retained_intron MGP_AJ_T0006823.1 MGP_AJ_G0005619.1 mouse_genomes_project 15 101183733 101186052 - Gm28265 lincRNA lincRNA MGP_AJ_T0042119.1 MGP_AJ_G0022173.1 mouse_genomes_project 15 86777152 86787297 + MGP_AJ_P0042119 Panx2 protein_coding protein_coding MGP_AJ_T0042120.1 MGP_AJ_G0022173.1 mouse_genomes_project 15 86777165 86788326 + MGP_AJ_P0042120 Panx2 protein_coding protein_coding MGP_AJ_T0042121.1 MGP_AJ_G0022173.1 mouse_genomes_project 15 86787091 86790945 + MGP_AJ_P0042121 Panx2 protein_coding protein_coding MGP_AJ_T0013077.1 MGP_AJ_G0011172.1 mouse_genomes_project 15 40195965 40196977 - processed_pseudogene processed_pseudogene MGP_AJ_T0010041.1 MGP_AJ_G0008163.1 mouse_genomes_project 15 36283137 36283246 - Gm24098 miRNA miRNA MGP_AJ_T0042591.1 MGP_AJ_G0022318.1 mouse_genomes_project 15 98555138 98560202 + MGP_AJ_P0042591 Dazap2 protein_coding protein_coding MGP_AJ_T0010043.1 MGP_AJ_G0008165.1 mouse_genomes_project 15 43376419 43376481 - Gm23562 miRNA miRNA MGP_AJ_T0040669.1 MGP_AJ_G0021715.1 mouse_genomes_project 15 24125802 24131857 + MGP_AJ_P0040669 Gm6576 protein_coding protein_coding MGP_AJ_T0006765.1 MGP_AJ_G0005583.1 mouse_genomes_project 15 40409321 40451151 - Gm10373 lincRNA lincRNA MGP_AJ_T0099576.1 MGP_AJ_G0037542.1 mouse_genomes_project 15 87781837 87781944 - Gm24415 snRNA snRNA MGP_AJ_T0099539.1 MGP_AJ_G0037505.1 mouse_genomes_project 15 31593166 31593276 + Gm22208 snRNA snRNA MGP_AJ_T0042476.1 MGP_AJ_G0022285.1 mouse_genomes_project 15 97077399 97094780 - MGP_AJ_P0042476 Fam186b protein_coding protein_coding MGP_AJ_T0042048.1 MGP_AJ_G0022149.1 mouse_genomes_project 15 82845896 82932150 + MGP_AJ_P0042048 Fbln1 protein_coding protein_coding MGP_AJ_T0042049.1 MGP_AJ_G0022149.1 mouse_genomes_project 15 82845952 82896410 + MGP_AJ_P0042049 Fbln1 protein_coding protein_coding MGP_AJ_T0042050.1 MGP_AJ_G0022149.1 mouse_genomes_project 15 82907950 82909969 + Fbln1 protein_coding processed_transcript MGP_AJ_T0100834.1 MGP_AJ_G0038800.1 mouse_genomes_project 15 41334837 41334969 + Gm25093 snoRNA snoRNA MGP_AJ_T0013112.1 MGP_AJ_G0011207.1 mouse_genomes_project 15 97643400 97643694 - processed_pseudogene processed_pseudogene MGP_AJ_T0041687.1 MGP_AJ_G0022038.1 mouse_genomes_project 15 77051746 77070705 - MGP_AJ_P0041687 Ddx17 protein_coding protein_coding MGP_AJ_T0006766.1 MGP_AJ_G0005584.1 mouse_genomes_project 15 41760896 41772622 + lincRNA lincRNA MGP_AJ_T0010070.1 MGP_AJ_G0008192.1 mouse_genomes_project 15 80093144 80093204 + Gm27825 miRNA miRNA MGP_AJ_T0042812.1 MGP_AJ_G0022396.1 mouse_genomes_project 15 101272628 101322404 - MGP_AJ_P0042812 Cbx5 protein_coding protein_coding MGP_AJ_T0042813.1 MGP_AJ_G0022396.1 mouse_genomes_project 15 101277770 101296407 - MGP_AJ_P0042813 Cbx5 protein_coding protein_coding MGP_AJ_T0042814.1 MGP_AJ_G0022396.1 mouse_genomes_project 15 101280338 101296360 - MGP_AJ_P0042814 Cbx5 protein_coding protein_coding MGP_AJ_T0042815.1 MGP_AJ_G0022396.1 mouse_genomes_project 15 101294133 101296421 - MGP_AJ_P0042815 Cbx5 protein_coding protein_coding MGP_AJ_T0100823.1 MGP_AJ_G0038789.1 mouse_genomes_project 15 27066295 27066373 - Gm23327 snoRNA snoRNA MGP_AJ_T0003602.1 MGP_AJ_G0003262.1 mouse_genomes_project 15 63074046 63092208 + Gm27153 antisense antisense MGP_AJ_T0040607.1 MGP_AJ_G0021696.1 mouse_genomes_project 15 9253282 9253744 - MGP_AJ_P0040607 1810049J17Rik protein_coding protein_coding MGP_AJ_T0041529.1 MGP_AJ_G0021992.1 mouse_genomes_project 15 75344771 75345425 - Txn2 protein_coding processed_transcript MGP_AJ_T0041530.1 MGP_AJ_G0021992.1 mouse_genomes_project 15 75344771 75358699 - MGP_AJ_P0041530 Txn2 protein_coding protein_coding MGP_AJ_T0041531.1 MGP_AJ_G0021992.1 mouse_genomes_project 15 75344771 75357536 - MGP_AJ_P0041531 Txn2 protein_coding protein_coding MGP_AJ_T0041532.1 MGP_AJ_G0021992.1 mouse_genomes_project 15 75344928 75357419 - MGP_AJ_P0041532 Txn2 protein_coding protein_coding MGP_AJ_T0041533.1 MGP_AJ_G0021992.1 mouse_genomes_project 15 75344934 75358661 - MGP_AJ_P0041533 Txn2 protein_coding protein_coding MGP_AJ_T0041534.1 MGP_AJ_G0021992.1 mouse_genomes_project 15 75349242 75357426 - MGP_AJ_P0041534 Txn2 protein_coding protein_coding MGP_AJ_T0041535.1 MGP_AJ_G0021992.1 mouse_genomes_project 15 75352925 75358667 - MGP_AJ_P0041535 Txn2 protein_coding protein_coding MGP_AJ_T0041536.1 MGP_AJ_G0021992.1 mouse_genomes_project 15 75356088 75358690 - MGP_AJ_P0041536 Txn2 protein_coding protein_coding MGP_AJ_T0041272.1 MGP_AJ_G0021926.1 mouse_genomes_project 15 73250390 73257066 + Zfp707 protein_coding retained_intron MGP_AJ_T0041273.1 MGP_AJ_G0021926.1 mouse_genomes_project 15 73250529 73256954 + MGP_AJ_P0041273 Zfp707 protein_coding protein_coding MGP_AJ_T0041274.1 MGP_AJ_G0021926.1 mouse_genomes_project 15 73250539 73256942 + MGP_AJ_P0041274 Zfp707 protein_coding protein_coding MGP_AJ_T0041275.1 MGP_AJ_G0021926.1 mouse_genomes_project 15 73250908 73255963 + MGP_AJ_P0041275 Zfp707 protein_coding protein_coding MGP_AJ_T0041276.1 MGP_AJ_G0021926.1 mouse_genomes_project 15 73253980 73255148 + Zfp707 protein_coding retained_intron MGP_AJ_T0099582.1 MGP_AJ_G0037548.1 mouse_genomes_project 15 97774198 97774333 - Gm23133 snRNA snRNA MGP_AJ_T0041933.1 MGP_AJ_G0022111.1 mouse_genomes_project 15 80271814 80273180 - MGP_AJ_P0041933 Cyp2d37-ps protein_coding protein_coding MGP_AJ_T0042666.1 MGP_AJ_G0022343.1 mouse_genomes_project 15 99607932 99623589 - MGP_AJ_P0042666 Gm5414 protein_coding protein_coding MGP_AJ_T0041203.1 MGP_AJ_G0021903.1 mouse_genomes_project 15 72163210 72165995 - MGP_AJ_P0041203 Ly6a protein_coding protein_coding MGP_AJ_T0006757.1 MGP_AJ_G0005575.1 mouse_genomes_project 15 34779526 34799448 + Gm15942 lincRNA lincRNA MGP_AJ_T0011384.1 MGP_AJ_G0009506.1 mouse_genomes_project 15 33106564 33106819 + Gm25372 misc_RNA misc_RNA MGP_AJ_T0098594.1 MGP_AJ_G0036578.1 mouse_genomes_project 15 9922533 9922633 + Gm24664 rRNA rRNA MGP_AJ_T0102349.1 MGP_AJ_G0040091.1 mouse_genomes_project 15 72587330 72590875 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0040746.1 MGP_AJ_G0021748.1 mouse_genomes_project 15 32468081 33008711 + MGP_AJ_P0040746 Vps13b protein_coding protein_coding MGP_AJ_T0006816.1 MGP_AJ_G0005613.1 mouse_genomes_project 15 99184336 99187262 - A330009N23Rik lincRNA lincRNA MGP_AJ_T0100854.1 MGP_AJ_G0038820.1 mouse_genomes_project 15 95812833 95812962 + Gm25668 snoRNA snoRNA MGP_AJ_T0010038.1 MGP_AJ_G0008160.1 mouse_genomes_project 15 33895655 33895729 - Gm25303 miRNA miRNA MGP_AJ_T0040878.1 MGP_AJ_G0021796.1 mouse_genomes_project 15 47583979 47820941 - MGP_AJ_P0040878 Trps1 protein_coding protein_coding MGP_AJ_T0040879.1 MGP_AJ_G0021796.1 mouse_genomes_project 15 47587638 47820963 - MGP_AJ_P0040879 Trps1 protein_coding protein_coding MGP_AJ_T0040880.1 MGP_AJ_G0021796.1 mouse_genomes_project 15 47587656 47820301 - MGP_AJ_P0040880 Trps1 protein_coding protein_coding MGP_AJ_T0040881.1 MGP_AJ_G0021796.1 mouse_genomes_project 15 47589660 47820298 - MGP_AJ_P0040881 Trps1 protein_coding protein_coding MGP_AJ_T0040882.1 MGP_AJ_G0021796.1 mouse_genomes_project 15 47589661 47814059 - MGP_AJ_P0040882 Trps1 protein_coding protein_coding MGP_AJ_T0040883.1 MGP_AJ_G0021796.1 mouse_genomes_project 15 47589677 47821382 - MGP_AJ_P0040883 Trps1 protein_coding protein_coding MGP_AJ_T0040884.1 MGP_AJ_G0021796.1 mouse_genomes_project 15 47749788 47757827 - MGP_AJ_P0040884 Trps1 protein_coding protein_coding MGP_AJ_T0040885.1 MGP_AJ_G0021796.1 mouse_genomes_project 15 47777155 47821804 - MGP_AJ_P0040885 Trps1 protein_coding protein_coding MGP_AJ_T0010098.1 MGP_AJ_G0008220.1 mouse_genomes_project 15 99737268 99737397 + Gm44323 miRNA miRNA MGP_AJ_T0042516.1 MGP_AJ_G0022295.1 mouse_genomes_project 15 97433944 97465922 - MGP_AJ_P0042516 Racgap1 protein_coding protein_coding MGP_AJ_T0042517.1 MGP_AJ_G0022295.1 mouse_genomes_project 15 97433945 97465935 - MGP_AJ_P0042517 Racgap1 protein_coding protein_coding MGP_AJ_T0042518.1 MGP_AJ_G0022295.1 mouse_genomes_project 15 97440323 97447084 - Racgap1 protein_coding retained_intron MGP_AJ_T0042519.1 MGP_AJ_G0022295.1 mouse_genomes_project 15 97440603 97465868 - Racgap1 protein_coding processed_transcript MGP_AJ_T0042520.1 MGP_AJ_G0022295.1 mouse_genomes_project 15 97442839 97465861 - Racgap1 protein_coding retained_intron MGP_AJ_T0042521.1 MGP_AJ_G0022295.1 mouse_genomes_project 15 97442899 97454119 - MGP_AJ_P0042521 Racgap1 protein_coding nonsense_mediated_decay MGP_AJ_T0042522.1 MGP_AJ_G0022295.1 mouse_genomes_project 15 97442945 97452570 - Racgap1 protein_coding retained_intron MGP_AJ_T0042523.1 MGP_AJ_G0022295.1 mouse_genomes_project 15 97446422 97465931 - MGP_AJ_P0042523 Racgap1 protein_coding protein_coding MGP_AJ_T0042524.1 MGP_AJ_G0022295.1 mouse_genomes_project 15 97446438 97449076 - Racgap1 protein_coding retained_intron MGP_AJ_T0042525.1 MGP_AJ_G0022295.1 mouse_genomes_project 15 97448594 97465848 - MGP_AJ_P0042525 Racgap1 protein_coding nonsense_mediated_decay MGP_AJ_T0042526.1 MGP_AJ_G0022295.1 mouse_genomes_project 15 97450456 97465891 - MGP_AJ_P0042526 Racgap1 protein_coding nonsense_mediated_decay MGP_AJ_T0042527.1 MGP_AJ_G0022295.1 mouse_genomes_project 15 97451760 97465861 - Racgap1 protein_coding retained_intron MGP_AJ_T0042528.1 MGP_AJ_G0022295.1 mouse_genomes_project 15 97451974 97465891 - MGP_AJ_P0042528 Racgap1 protein_coding protein_coding MGP_AJ_T0042529.1 MGP_AJ_G0022295.1 mouse_genomes_project 15 97454100 97465922 - MGP_AJ_P0042529 Racgap1 protein_coding protein_coding MGP_AJ_T0006747.1 MGP_AJ_G0005569.1 mouse_genomes_project 15 8893878 8899112 + 1700047G03Rik lincRNA lincRNA MGP_AJ_T0006748.1 MGP_AJ_G0005569.1 mouse_genomes_project 15 8893939 8899721 + 1700047G03Rik lincRNA lincRNA MGP_AJ_T0006749.1 MGP_AJ_G0005569.1 mouse_genomes_project 15 8894026 8899143 + 1700047G03Rik lincRNA lincRNA MGP_AJ_T0006750.1 MGP_AJ_G0005569.1 mouse_genomes_project 15 8896661 8899706 + 1700047G03Rik lincRNA lincRNA MGP_AJ_T0100835.1 MGP_AJ_G0038801.1 mouse_genomes_project 15 41916762 41916905 + Gm23343 snoRNA snoRNA MGP_AJ_T0041685.1 MGP_AJ_G0022036.1 mouse_genomes_project 15 77005962 77027730 - MGP_AJ_P0041685 Kcnj4 protein_coding protein_coding MGP_AJ_T0041623.1 MGP_AJ_G0022024.1 mouse_genomes_project 15 76591149 76610228 + MGP_AJ_P0041623 Eif3l protein_coding protein_coding MGP_AJ_T0013090.1 MGP_AJ_G0011185.1 mouse_genomes_project 15 71842682 71842826 + processed_pseudogene processed_pseudogene MGP_AJ_T0042174.1 MGP_AJ_G0022185.1 mouse_genomes_project 15 87060265 87062883 + MGP_AJ_P0042174 Miox protein_coding protein_coding MGP_AJ_T0042175.1 MGP_AJ_G0022185.1 mouse_genomes_project 15 87060328 87061992 + Miox protein_coding retained_intron MGP_AJ_T0042176.1 MGP_AJ_G0022185.1 mouse_genomes_project 15 87060507 87062503 + Miox protein_coding retained_intron MGP_AJ_T0042177.1 MGP_AJ_G0022185.1 mouse_genomes_project 15 87060797 87062280 + MGP_AJ_P0042177 Miox protein_coding nonsense_mediated_decay MGP_AJ_T0042178.1 MGP_AJ_G0022185.1 mouse_genomes_project 15 87060798 87062282 + Miox protein_coding retained_intron MGP_AJ_T0042179.1 MGP_AJ_G0022185.1 mouse_genomes_project 15 87062300 87062879 + MGP_AJ_P0042179 Miox protein_coding protein_coding MGP_AJ_T0042039.1 MGP_AJ_G0022142.1 mouse_genomes_project 15 82556434 82566048 - MGP_AJ_P0042039 Gm29666 protein_coding protein_coding MGP_AJ_T0042129.1 MGP_AJ_G0022175.1 mouse_genomes_project 15 86806616 86815718 + MGP_AJ_P0042129 protein_coding nonsense_mediated_decay MGP_AJ_T0042130.1 MGP_AJ_G0022175.1 mouse_genomes_project 15 86806616 86817878 + MGP_AJ_P0042130 protein_coding protein_coding MGP_AJ_T0006764.1 MGP_AJ_G0005582.1 mouse_genomes_project 15 39671569 39699919 + Gm17473 lincRNA lincRNA MGP_AJ_T0041670.1 MGP_AJ_G0022033.1 mouse_genomes_project 15 76866392 76877910 + MGP_AJ_P0041670 Maff protein_coding protein_coding MGP_AJ_T0041671.1 MGP_AJ_G0022033.1 mouse_genomes_project 15 76866912 76877910 + MGP_AJ_P0041671 Maff protein_coding protein_coding MGP_AJ_T0099540.1 MGP_AJ_G0037506.1 mouse_genomes_project 15 33251627 33251786 + Gm22979 snRNA snRNA MGP_AJ_T0041415.1 MGP_AJ_G0021956.1 mouse_genomes_project 15 73828298 73831486 + MGP_AJ_P0041415 Slc52a2 protein_coding protein_coding MGP_AJ_T0040810.1 MGP_AJ_G0021765.1 mouse_genomes_project 15 35048649 35159560 - MGP_AJ_P0040810 Ubr5 protein_coding unknown_likely_coding MGP_AJ_T0040811.1 MGP_AJ_G0021765.1 mouse_genomes_project 15 35048651 35159988 - MGP_AJ_P0040811 Ubr5 protein_coding protein_coding MGP_AJ_T0040998.1 MGP_AJ_G0021845.1 mouse_genomes_project 15 56597003 56605245 + MGP_AJ_P0040998 Trib1 protein_coding protein_coding MGP_AJ_T0040999.1 MGP_AJ_G0021845.1 mouse_genomes_project 15 56597306 56602384 + MGP_AJ_P0040999 Trib1 protein_coding protein_coding MGP_AJ_T0041346.1 MGP_AJ_G0021942.1 mouse_genomes_project 15 73619271 73622948 + MGP_AJ_P0041346 Gpaa1 protein_coding protein_coding MGP_AJ_T0041347.1 MGP_AJ_G0021942.1 mouse_genomes_project 15 73619384 73622939 + MGP_AJ_P0041347 Gpaa1 protein_coding nonsense_mediated_decay MGP_AJ_T0041348.1 MGP_AJ_G0021942.1 mouse_genomes_project 15 73619385 73622944 + MGP_AJ_P0041348 Gpaa1 protein_coding protein_coding MGP_AJ_T0041349.1 MGP_AJ_G0021942.1 mouse_genomes_project 15 73619390 73620855 + Gpaa1 protein_coding retained_intron MGP_AJ_T0041350.1 MGP_AJ_G0021942.1 mouse_genomes_project 15 73619553 73620527 + MGP_AJ_P0041350 Gpaa1 protein_coding protein_coding MGP_AJ_T0041351.1 MGP_AJ_G0021942.1 mouse_genomes_project 15 73620039 73620962 + MGP_AJ_P0041351 Gpaa1 protein_coding nonsense_mediated_decay MGP_AJ_T0041352.1 MGP_AJ_G0021942.1 mouse_genomes_project 15 73620263 73621658 + Gpaa1 protein_coding retained_intron MGP_AJ_T0041353.1 MGP_AJ_G0021942.1 mouse_genomes_project 15 73620567 73621288 + MGP_AJ_P0041353 Gpaa1 protein_coding protein_coding MGP_AJ_T0041354.1 MGP_AJ_G0021942.1 mouse_genomes_project 15 73621209 73622334 + Gpaa1 protein_coding retained_intron MGP_AJ_T0041355.1 MGP_AJ_G0021942.1 mouse_genomes_project 15 73621771 73622339 + Gpaa1 protein_coding retained_intron MGP_AJ_T0041806.1 MGP_AJ_G0022069.1 mouse_genomes_project 15 78781025 78784480 + MGP_AJ_P0041806 Mchr1 protein_coding protein_coding MGP_AJ_T0042775.1 MGP_AJ_G0022383.1 mouse_genomes_project 15 100590477 100689058 - MGP_AJ_P0042775 protein_coding protein_coding MGP_AJ_T0042776.1 MGP_AJ_G0022383.1 mouse_genomes_project 15 100593148 100689435 - MGP_AJ_P0042776 protein_coding protein_coding MGP_AJ_T0042777.1 MGP_AJ_G0022383.1 mouse_genomes_project 15 100593148 100593538 - MGP_AJ_P0042777 protein_coding protein_coding MGP_AJ_T0042778.1 MGP_AJ_G0022383.1 mouse_genomes_project 15 100598084 100689424 - MGP_AJ_P0042778 protein_coding protein_coding MGP_AJ_T0042779.1 MGP_AJ_G0022383.1 mouse_genomes_project 15 100601159 100689438 - MGP_AJ_P0042779 protein_coding protein_coding MGP_AJ_T0042780.1 MGP_AJ_G0022383.1 mouse_genomes_project 15 100601839 100689073 - MGP_AJ_P0042780 protein_coding protein_coding MGP_AJ_T0042781.1 MGP_AJ_G0022383.1 mouse_genomes_project 15 100610883 100689423 - protein_coding retained_intron MGP_AJ_T0042782.1 MGP_AJ_G0022383.1 mouse_genomes_project 15 100612947 100689449 - MGP_AJ_P0042782 protein_coding nonsense_mediated_decay MGP_AJ_T0042783.1 MGP_AJ_G0022383.1 mouse_genomes_project 15 100612999 100688907 - MGP_AJ_P0042783 protein_coding protein_coding MGP_AJ_T0042784.1 MGP_AJ_G0022383.1 mouse_genomes_project 15 100615873 100689052 - MGP_AJ_P0042784 protein_coding protein_coding MGP_AJ_T0042785.1 MGP_AJ_G0022383.1 mouse_genomes_project 15 100615873 100689431 - MGP_AJ_P0042785 protein_coding protein_coding MGP_AJ_T0042786.1 MGP_AJ_G0022383.1 mouse_genomes_project 15 100628839 100689055 - protein_coding retained_intron MGP_AJ_T0042787.1 MGP_AJ_G0022383.1 mouse_genomes_project 15 100663900 100689449 - protein_coding retained_intron MGP_AJ_T0101962.1 MGP_AJ_G0039801.1 mouse_genomes_project 15 72708997 72713221 - transcribed_unprocessed_pseudogene processed_transcript MGP_AJ_T0101963.1 MGP_AJ_G0039801.1 mouse_genomes_project 15 72709357 72712828 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_AJ_T0006808.1 MGP_AJ_G0005608.1 mouse_genomes_project 15 93977742 94001233 - 4833422M21Rik lincRNA lincRNA MGP_AJ_T0006809.1 MGP_AJ_G0005608.1 mouse_genomes_project 15 93977742 93987126 - 4833422M21Rik lincRNA lincRNA MGP_AJ_T0006810.1 MGP_AJ_G0005608.1 mouse_genomes_project 15 93995493 94001165 - 4833422M21Rik lincRNA lincRNA MGP_AJ_T0042671.1 MGP_AJ_G0022348.1 mouse_genomes_project 15 99782813 99791201 - MGP_AJ_P0042671 Krt74 protein_coding protein_coding MGP_AJ_T0042679.1 MGP_AJ_G0022355.1 mouse_genomes_project 15 99956403 99962603 - MGP_AJ_P0042679 Krt4 protein_coding protein_coding MGP_AJ_T0042680.1 MGP_AJ_G0022356.1 mouse_genomes_project 15 99979615 99990596 - MGP_AJ_P0042680 Krt79 protein_coding protein_coding MGP_AJ_T0041689.1 MGP_AJ_G0022040.1 mouse_genomes_project 15 77134231 77187848 - MGP_AJ_P0041689 Fam227a protein_coding protein_coding MGP_AJ_T0041690.1 MGP_AJ_G0022040.1 mouse_genomes_project 15 77141162 77187685 - MGP_AJ_P0041690 Fam227a protein_coding protein_coding MGP_AJ_T0041691.1 MGP_AJ_G0022040.1 mouse_genomes_project 15 77141216 77187685 - MGP_AJ_P0041691 Fam227a protein_coding nonsense_mediated_decay MGP_AJ_T0041692.1 MGP_AJ_G0022040.1 mouse_genomes_project 15 77151874 77177198 - MGP_AJ_P0041692 Fam227a protein_coding protein_coding MGP_AJ_T0041693.1 MGP_AJ_G0022040.1 mouse_genomes_project 15 77163666 77187848 - Fam227a protein_coding retained_intron MGP_AJ_T0040702.1 MGP_AJ_G0021731.1 mouse_genomes_project 15 29254861 29255867 + MGP_AJ_P0040702 Tas2r119 protein_coding protein_coding MGP_AJ_T0041061.1 MGP_AJ_G0021862.1 mouse_genomes_project 15 62993852 63287071 - MGP_AJ_P0041061 Kcnq3 protein_coding protein_coding MGP_AJ_T0041062.1 MGP_AJ_G0021862.1 mouse_genomes_project 15 63033217 63103673 - Kcnq3 protein_coding processed_transcript MGP_AJ_T0041063.1 MGP_AJ_G0021862.1 mouse_genomes_project 15 63283923 63286907 - Kcnq3 protein_coding retained_intron MGP_AJ_T0100856.1 MGP_AJ_G0038822.1 mouse_genomes_project 15 96303139 96303276 - Snora2b snoRNA snoRNA MGP_AJ_T0041917.1 MGP_AJ_G0022104.1 mouse_genomes_project 15 79914204 79924302 + Smdt1 protein_coding processed_transcript MGP_AJ_T0041920.1 MGP_AJ_G0022104.1 mouse_genomes_project 15 79916227 79924250 + Smdt1 protein_coding processed_transcript MGP_AJ_T0041922.1 MGP_AJ_G0022104.1 mouse_genomes_project 15 79921191 79924333 + MGP_AJ_P0041922 Smdt1 protein_coding protein_coding MGP_AJ_T0041923.1 MGP_AJ_G0022104.1 mouse_genomes_project 15 79921251 79924334 + MGP_AJ_P0041923 Smdt1 protein_coding nonsense_mediated_decay MGP_AJ_T0041924.1 MGP_AJ_G0022104.1 mouse_genomes_project 15 79922457 79924112 + MGP_AJ_P0041924 Smdt1 protein_coding protein_coding MGP_AJ_T0041040.1 MGP_AJ_G0021856.1 mouse_genomes_project 15 61713650 61950937 - MGP_AJ_P0041040 Adcy8 protein_coding protein_coding MGP_AJ_T0099538.1 MGP_AJ_G0037504.1 mouse_genomes_project 15 27648217 27648280 + Gm24487 snRNA snRNA MGP_AJ_T0010065.1 MGP_AJ_G0008187.1 mouse_genomes_project 15 78184841 78184905 + Mir6957 miRNA miRNA MGP_AJ_T0042272.1 MGP_AJ_G0022210.1 mouse_genomes_project 15 89787594 90000396 + Cntn1 protein_coding retained_intron MGP_AJ_T0042273.1 MGP_AJ_G0022210.1 mouse_genomes_project 15 89787594 90099008 + MGP_AJ_P0042273 Cntn1 protein_coding protein_coding MGP_AJ_T0042274.1 MGP_AJ_G0022210.1 mouse_genomes_project 15 89872930 90098995 + MGP_AJ_P0042274 Cntn1 protein_coding protein_coding MGP_AJ_T0042275.1 MGP_AJ_G0022210.1 mouse_genomes_project 15 89909040 90097159 + MGP_AJ_P0042275 Cntn1 protein_coding protein_coding MGP_AJ_T0042506.1 MGP_AJ_G0022289.1 mouse_genomes_project 15 97231786 97267394 - MGP_AJ_P0042506 Nckap5l protein_coding protein_coding MGP_AJ_T0042507.1 MGP_AJ_G0022289.1 mouse_genomes_project 15 97233368 97234293 - MGP_AJ_P0042507 Nckap5l protein_coding protein_coding MGP_AJ_T0042508.1 MGP_AJ_G0022289.1 mouse_genomes_project 15 97233769 97234289 - Nckap5l protein_coding processed_transcript MGP_AJ_T0042509.1 MGP_AJ_G0022289.1 mouse_genomes_project 15 97239056 97267358 - MGP_AJ_P0042509 Nckap5l protein_coding protein_coding MGP_AJ_T0041708.1 MGP_AJ_G0022046.1 mouse_genomes_project 15 77285287 77298131 - MGP_AJ_P0041708 Dnal4 protein_coding protein_coding MGP_AJ_T0041709.1 MGP_AJ_G0022046.1 mouse_genomes_project 15 77285290 77298215 - MGP_AJ_P0041709 Dnal4 protein_coding protein_coding MGP_AJ_T0041710.1 MGP_AJ_G0022046.1 mouse_genomes_project 15 77288821 77300728 - Dnal4 protein_coding processed_transcript MGP_AJ_T0041711.1 MGP_AJ_G0022046.1 mouse_genomes_project 15 77298319 77301605 - Dnal4 protein_coding processed_transcript MGP_AJ_T0010055.1 MGP_AJ_G0008177.1 mouse_genomes_project 15 73577612 73577702 - Mir3079 miRNA miRNA MGP_AJ_T0041457.1 MGP_AJ_G0021966.1 mouse_genomes_project 15 73988828 73991526 + MGP_AJ_P0041457 Mfsd3 protein_coding protein_coding MGP_AJ_T0010097.1 MGP_AJ_G0008219.1 mouse_genomes_project 15 99620868 99640551 + miRNA miRNA MGP_AJ_T0040718.1 MGP_AJ_G0021737.1 mouse_genomes_project 15 31288083 31335478 + MGP_AJ_P0040718 Laptm4b protein_coding protein_coding MGP_AJ_T0041017.1 MGP_AJ_G0021853.1 mouse_genomes_project 15 60877269 60915384 - MGP_AJ_P0041017 protein_coding protein_coding MGP_AJ_T0041018.1 MGP_AJ_G0021853.1 mouse_genomes_project 15 60877270 60890698 - MGP_AJ_P0041018 protein_coding protein_coding MGP_AJ_T0042512.1 MGP_AJ_G0022292.1 mouse_genomes_project 15 97391787 97398090 + MGP_AJ_P0042512 Aqp2 protein_coding protein_coding MGP_AJ_T0041514.1 MGP_AJ_G0021985.1 mouse_genomes_project 15 74778471 74782011 + protein_coding processed_transcript MGP_AJ_T0041515.1 MGP_AJ_G0021985.1 mouse_genomes_project 15 74778471 74782961 + MGP_AJ_P0041515 protein_coding protein_coding MGP_AJ_T0042173.1 MGP_AJ_G0022184.1 mouse_genomes_project 15 87047713 87049470 + MGP_AJ_P0042173 Adm2 protein_coding protein_coding MGP_AJ_T0000932.1 MGP_AJ_G0000866.1 mouse_genomes_project 15 5586394 5589362 - TEC TEC MGP_AJ_T0010095.1 MGP_AJ_G0008217.1 mouse_genomes_project 15 99553841 99553970 + Gm44460 miRNA miRNA MGP_AJ_T0041695.1 MGP_AJ_G0022042.1 mouse_genomes_project 15 77200334 77202096 + MGP_AJ_P0041695 Tomm22 protein_coding protein_coding MGP_AJ_T0041696.1 MGP_AJ_G0022042.1 mouse_genomes_project 15 77200564 77201903 + Tomm22 protein_coding processed_transcript MGP_AJ_T0041239.1 MGP_AJ_G0021914.1 mouse_genomes_project 15 72938925 72960630 - MGP_AJ_P0041239 Top1mt protein_coding protein_coding MGP_AJ_T0042266.1 MGP_AJ_G0022209.1 mouse_genomes_project 15 89572208 89600506 + MGP_AJ_P0042266 protein_coding protein_coding MGP_AJ_T0042267.1 MGP_AJ_G0022209.1 mouse_genomes_project 15 89572271 89600875 + MGP_AJ_P0042267 protein_coding protein_coding MGP_AJ_T0042268.1 MGP_AJ_G0022209.1 mouse_genomes_project 15 89572278 89600877 + MGP_AJ_P0042268 protein_coding protein_coding MGP_AJ_T0042269.1 MGP_AJ_G0022209.1 mouse_genomes_project 15 89572280 89596359 + protein_coding processed_transcript MGP_AJ_T0042270.1 MGP_AJ_G0022209.1 mouse_genomes_project 15 89582842 89600879 + MGP_AJ_P0042270 protein_coding protein_coding MGP_AJ_T0042271.1 MGP_AJ_G0022209.1 mouse_genomes_project 15 89587080 89600879 + MGP_AJ_P0042271 protein_coding protein_coding MGP_AJ_T0042415.1 MGP_AJ_G0022258.1 mouse_genomes_project 15 96295626 96313000 - MGP_AJ_P0042415 Kansl2 protein_coding protein_coding MGP_AJ_T0042416.1 MGP_AJ_G0022258.1 mouse_genomes_project 15 96295906 96312977 - MGP_AJ_P0042416 Kansl2 protein_coding protein_coding MGP_AJ_T0010068.1 MGP_AJ_G0008190.1 mouse_genomes_project 15 79765352 79765421 + Mir33 miRNA miRNA MGP_AJ_T0042741.1 MGP_AJ_G0022376.1 mouse_genomes_project 15 100521547 100523109 + MGP_AJ_P0042741 Prr13 protein_coding protein_coding MGP_AJ_T0042742.1 MGP_AJ_G0022376.1 mouse_genomes_project 15 100521694 100525321 + MGP_AJ_P0042742 Prr13 protein_coding protein_coding MGP_AJ_T0042743.1 MGP_AJ_G0022376.1 mouse_genomes_project 15 100521721 100525297 + MGP_AJ_P0042743 Prr13 protein_coding protein_coding MGP_AJ_T0042744.1 MGP_AJ_G0022376.1 mouse_genomes_project 15 100521751 100525299 + MGP_AJ_P0042744 Prr13 protein_coding protein_coding MGP_AJ_T0042745.1 MGP_AJ_G0022376.1 mouse_genomes_project 15 100522603 100525291 + MGP_AJ_P0042745 Prr13 protein_coding protein_coding MGP_AJ_T0042202.1 MGP_AJ_G0022194.1 mouse_genomes_project 15 87146134 87156374 - MGP_AJ_P0042202 Cpt1b protein_coding protein_coding MGP_AJ_T0042203.1 MGP_AJ_G0022194.1 mouse_genomes_project 15 87148490 87151940 - MGP_AJ_P0042203 Cpt1b protein_coding nonsense_mediated_decay MGP_AJ_T0042204.1 MGP_AJ_G0022194.1 mouse_genomes_project 15 87154274 87154982 - Cpt1b protein_coding retained_intron MGP_AJ_T0042205.1 MGP_AJ_G0022194.1 mouse_genomes_project 15 87155346 87156306 - MGP_AJ_P0042205 Cpt1b protein_coding protein_coding MGP_AJ_T0041910.1 MGP_AJ_G0022099.1 mouse_genomes_project 15 79824182 79832628 + MGP_AJ_P0041910 1500009C09Rik protein_coding protein_coding MGP_AJ_T0041911.1 MGP_AJ_G0022099.1 mouse_genomes_project 15 79827912 79832643 + MGP_AJ_P0041911 1500009C09Rik protein_coding protein_coding MGP_AJ_T0042149.1 MGP_AJ_G0022178.1 mouse_genomes_project 15 86853914 86864249 - MGP_AJ_P0042149 Mapk12 protein_coding protein_coding MGP_AJ_T0040943.1 MGP_AJ_G0021820.1 mouse_genomes_project 15 54149457 54172189 - MGP_AJ_P0040943 Slc22a22 protein_coding protein_coding MGP_AJ_T0040944.1 MGP_AJ_G0021820.1 mouse_genomes_project 15 54149461 54382044 - MGP_AJ_P0040944 Slc22a22 protein_coding protein_coding MGP_AJ_T0040945.1 MGP_AJ_G0021820.1 mouse_genomes_project 15 54163556 54172165 - MGP_AJ_P0040945 Slc22a22 protein_coding protein_coding MGP_AJ_T0010051.1 MGP_AJ_G0008173.1 mouse_genomes_project 15 71688053 71688137 + Gm26117 miRNA miRNA MGP_AJ_T0000943.1 MGP_AJ_G0000877.1 mouse_genomes_project 15 90232395 90235285 + TEC TEC MGP_AJ_T0040983.1 MGP_AJ_G0021835.1 mouse_genomes_project 15 55717980 55759495 - MGP_AJ_P0040983 Tmem65 protein_coding protein_coding MGP_AJ_T0013113.1 MGP_AJ_G0011208.1 mouse_genomes_project 15 97733294 97733564 - processed_pseudogene processed_pseudogene MGP_AJ_T0010101.1 MGP_AJ_G0008223.1 mouse_genomes_project 15 101051990 101052075 + Mir196a-2 miRNA miRNA MGP_AJ_T0040588.1 MGP_AJ_G0021691.1 mouse_genomes_project 15 8302703 8318611 - MGP_AJ_P0040588 Tars protein_coding protein_coding MGP_AJ_T0040783.1 MGP_AJ_G0021761.1 mouse_genomes_project 15 34310593 34445890 + MGP_AJ_P0040783 Grhl2 protein_coding protein_coding MGP_AJ_T0040784.1 MGP_AJ_G0021761.1 mouse_genomes_project 15 34310593 34412932 + MGP_AJ_P0040784 Grhl2 protein_coding protein_coding MGP_AJ_T0040785.1 MGP_AJ_G0021761.1 mouse_genomes_project 15 34310615 34357531 + MGP_AJ_P0040785 Grhl2 protein_coding protein_coding MGP_AJ_T0040786.1 MGP_AJ_G0021761.1 mouse_genomes_project 15 34396861 34445883 + Grhl2 protein_coding processed_transcript MGP_AJ_T0040787.1 MGP_AJ_G0021761.1 mouse_genomes_project 15 34415021 34443260 + MGP_AJ_P0040787 Grhl2 protein_coding protein_coding MGP_AJ_T0041296.1 MGP_AJ_G0021932.1 mouse_genomes_project 15 73354185 73364948 - MGP_AJ_P0041296 Puf60 protein_coding protein_coding MGP_AJ_T0041297.1 MGP_AJ_G0021932.1 mouse_genomes_project 15 73354185 73364948 - MGP_AJ_P0041297 Puf60 protein_coding protein_coding MGP_AJ_T0042841.1 MGP_AJ_G0022404.1 mouse_genomes_project 15 101518486 101527955 - MGP_AJ_P0042841 BC048502 protein_coding protein_coding MGP_AJ_T0041240.1 MGP_AJ_G0021915.1 mouse_genomes_project 15 72986030 72996159 + MGP_AJ_P0041240 Rhpn1 protein_coding protein_coding MGP_AJ_T0041241.1 MGP_AJ_G0021915.1 mouse_genomes_project 15 72986058 72996161 + Rhpn1 protein_coding retained_intron MGP_AJ_T0041242.1 MGP_AJ_G0021915.1 mouse_genomes_project 15 72986068 72996156 + Rhpn1 protein_coding retained_intron MGP_AJ_T0041243.1 MGP_AJ_G0021915.1 mouse_genomes_project 15 72986079 72996159 + MGP_AJ_P0041243 Rhpn1 protein_coding nonsense_mediated_decay MGP_AJ_T0041244.1 MGP_AJ_G0021915.1 mouse_genomes_project 15 72986144 72995976 + MGP_AJ_P0041244 Rhpn1 protein_coding protein_coding MGP_AJ_T0013064.1 MGP_AJ_G0011159.1 mouse_genomes_project 15 10412249 10413028 + processed_pseudogene processed_pseudogene MGP_AJ_T0099575.1 MGP_AJ_G0037541.1 mouse_genomes_project 15 86745557 86745716 + Gm23737 snRNA snRNA MGP_AJ_T0042026.1 MGP_AJ_G0022139.1 mouse_genomes_project 15 82329883 82352654 + MGP_AJ_P0042026 Prr5 protein_coding protein_coding MGP_AJ_T0042816.1 MGP_AJ_G0022397.1 mouse_genomes_project 15 101322618 101326663 + MGP_AJ_P0042816 protein_coding unknown_likely_coding MGP_AJ_T0042817.1 MGP_AJ_G0022397.1 mouse_genomes_project 15 101323101 101324667 + MGP_AJ_P0042817 protein_coding unknown_likely_coding MGP_AJ_T0042112.1 MGP_AJ_G0022171.1 mouse_genomes_project 15 86682902 86705087 - MGP_AJ_P0042112 Mlc1 protein_coding protein_coding MGP_AJ_T0042113.1 MGP_AJ_G0022171.1 mouse_genomes_project 15 86682902 86705087 - MGP_AJ_P0042113 Mlc1 protein_coding protein_coding MGP_AJ_T0040914.1 MGP_AJ_G0021812.1 mouse_genomes_project 15 51999558 52013931 - MGP_AJ_P0040914 Dscc1 protein_coding protein_coding MGP_AJ_T0040915.1 MGP_AJ_G0021812.1 mouse_genomes_project 15 51999561 52013920 - MGP_AJ_P0040915 Dscc1 protein_coding protein_coding MGP_AJ_T0040916.1 MGP_AJ_G0021812.1 mouse_genomes_project 15 52007178 52011205 - Dscc1 protein_coding retained_intron MGP_AJ_T0040850.1 MGP_AJ_G0021782.1 mouse_genomes_project 15 38846833 38851242 - MGP_AJ_P0040850 Abra protein_coding protein_coding MGP_AJ_T0042107.1 MGP_AJ_G0022169.1 mouse_genomes_project 15 86588013 86591546 + MGP_AJ_P0042107 Pim3 protein_coding protein_coding MGP_AJ_T0013059.1 MGP_AJ_G0011154.1 mouse_genomes_project 15 5863451 5864271 + processed_pseudogene processed_pseudogene MGP_AJ_T0040645.1 MGP_AJ_G0021707.1 mouse_genomes_project 15 22253811 22265592 - MGP_AJ_P0040645 9230109A22Rik protein_coding protein_coding MGP_AJ_T0040493.1 MGP_AJ_G0021663.1 mouse_genomes_project 15 4728670 4753652 + MGP_AJ_P0040493 Gdnf protein_coding protein_coding MGP_AJ_T0042690.1 MGP_AJ_G0022362.1 mouse_genomes_project 15 100204149 100208923 + MGP_AJ_P0042690 Igfbp6 protein_coding protein_coding MGP_AJ_T0041723.1 MGP_AJ_G0022050.1 mouse_genomes_project 15 77417954 77434703 + MGP_AJ_P0041723 Apobec3 protein_coding protein_coding MGP_AJ_T0041724.1 MGP_AJ_G0022050.1 mouse_genomes_project 15 77417989 77434756 + MGP_AJ_P0041724 Apobec3 protein_coding protein_coding MGP_AJ_T0041725.1 MGP_AJ_G0022050.1 mouse_genomes_project 15 77418344 77423224 + Apobec3 protein_coding processed_transcript MGP_AJ_T0041726.1 MGP_AJ_G0022050.1 mouse_genomes_project 15 77418701 77437590 + MGP_AJ_P0041726 Apobec3 protein_coding protein_coding MGP_AJ_T0041727.1 MGP_AJ_G0022050.1 mouse_genomes_project 15 77418704 77434648 + MGP_AJ_P0041727 Apobec3 protein_coding nonsense_mediated_decay MGP_AJ_T0041728.1 MGP_AJ_G0022050.1 mouse_genomes_project 15 77418735 77436529 + MGP_AJ_P0041728 Apobec3 protein_coding nonsense_mediated_decay MGP_AJ_T0041729.1 MGP_AJ_G0022050.1 mouse_genomes_project 15 77418741 77437249 + MGP_AJ_P0041729 Apobec3 protein_coding protein_coding MGP_AJ_T0041730.1 MGP_AJ_G0022050.1 mouse_genomes_project 15 77418742 77437597 + MGP_AJ_P0041730 Apobec3 protein_coding protein_coding MGP_AJ_T0041731.1 MGP_AJ_G0022050.1 mouse_genomes_project 15 77418748 77444759 + MGP_AJ_P0041731 Apobec3 protein_coding nonsense_mediated_decay MGP_AJ_T0041732.1 MGP_AJ_G0022050.1 mouse_genomes_project 15 77418777 77436529 + MGP_AJ_P0041732 Apobec3 protein_coding protein_coding MGP_AJ_T0041733.1 MGP_AJ_G0022050.1 mouse_genomes_project 15 77421349 77423645 + MGP_AJ_P0041733 Apobec3 protein_coding protein_coding MGP_AJ_T0041734.1 MGP_AJ_G0022050.1 mouse_genomes_project 15 77423282 77435066 + Apobec3 protein_coding retained_intron MGP_AJ_T0041735.1 MGP_AJ_G0022050.1 mouse_genomes_project 15 77429483 77437084 + Apobec3 protein_coding retained_intron MGP_AJ_T0041736.1 MGP_AJ_G0022050.1 mouse_genomes_project 15 77435270 77436237 + Apobec3 protein_coding retained_intron MGP_AJ_T0010031.1 MGP_AJ_G0008153.1 mouse_genomes_project 15 23055575 23055636 + Mir7212 miRNA miRNA MGP_AJ_T0042467.1 MGP_AJ_G0022278.1 mouse_genomes_project 15 96852970 96856761 + MGP_AJ_P0042467 Prph protein_coding protein_coding MGP_AJ_T0042468.1 MGP_AJ_G0022278.1 mouse_genomes_project 15 96852970 96856761 + MGP_AJ_P0042468 Prph protein_coding protein_coding MGP_AJ_T0041509.1 MGP_AJ_G0021982.1 mouse_genomes_project 15 74694929 74708229 - MGP_AJ_P0041509 protein_coding protein_coding MGP_AJ_T0041510.1 MGP_AJ_G0021982.1 mouse_genomes_project 15 74694929 74708183 - MGP_AJ_P0041510 protein_coding protein_coding MGP_AJ_T0013101.1 MGP_AJ_G0011196.1 mouse_genomes_project 15 81662531 81662868 + processed_pseudogene processed_pseudogene MGP_AJ_T0099579.1 MGP_AJ_G0037545.1 mouse_genomes_project 15 94417715 94417823 + Gm22045 snRNA snRNA MGP_AJ_T0041140.1 MGP_AJ_G0021884.1 mouse_genomes_project 15 70891056 70962639 - MGP_AJ_P0041140 Mroh5 protein_coding nonsense_mediated_decay MGP_AJ_T0041141.1 MGP_AJ_G0021884.1 mouse_genomes_project 15 70911331 70914015 - Mroh5 protein_coding processed_transcript MGP_AJ_T0041142.1 MGP_AJ_G0021884.1 mouse_genomes_project 15 70917874 70971345 - MGP_AJ_P0041142 Mroh5 protein_coding protein_coding MGP_AJ_T0041143.1 MGP_AJ_G0021884.1 mouse_genomes_project 15 70918398 70951143 - MGP_AJ_P0041143 Mroh5 protein_coding protein_coding MGP_AJ_T0041144.1 MGP_AJ_G0021884.1 mouse_genomes_project 15 70928192 70971373 - Mroh5 protein_coding retained_intron MGP_AJ_T0041516.1 MGP_AJ_G0021986.1 mouse_genomes_project 15 74795947 74806575 + MGP_AJ_P0041516 protein_coding protein_coding MGP_AJ_T0041223.1 MGP_AJ_G0021911.1 mouse_genomes_project 15 72830026 72845779 - MGP_AJ_P0041223 Ly6h protein_coding protein_coding MGP_AJ_T0041224.1 MGP_AJ_G0021911.1 mouse_genomes_project 15 72832261 72845779 - MGP_AJ_P0041224 Ly6h protein_coding nonsense_mediated_decay MGP_AJ_T0041225.1 MGP_AJ_G0021911.1 mouse_genomes_project 15 72843960 72846386 - MGP_AJ_P0041225 Ly6h protein_coding protein_coding MGP_AJ_T0041226.1 MGP_AJ_G0021911.1 mouse_genomes_project 15 72843961 72845987 - MGP_AJ_P0041226 Ly6h protein_coding protein_coding MGP_AJ_T0041227.1 MGP_AJ_G0021911.1 mouse_genomes_project 15 72843963 72845788 - MGP_AJ_P0041227 Ly6h protein_coding protein_coding MGP_AJ_T0041228.1 MGP_AJ_G0021911.1 mouse_genomes_project 15 72844242 72846347 - MGP_AJ_P0041228 Ly6h protein_coding protein_coding MGP_AJ_T0041229.1 MGP_AJ_G0021911.1 mouse_genomes_project 15 72844429 72845763 - Ly6h protein_coding retained_intron MGP_AJ_T0041934.1 MGP_AJ_G0022112.1 mouse_genomes_project 15 80339946 80345129 - MGP_AJ_P0041934 Cyp2d40 protein_coding protein_coding MGP_AJ_T0041820.1 MGP_AJ_G0022074.1 mouse_genomes_project 15 79018456 79029509 + MGP_AJ_P0041820 Rbx1 protein_coding protein_coding MGP_AJ_T0041170.1 MGP_AJ_G0021893.1 mouse_genomes_project 15 71856105 71858188 - MGP_AJ_P0041170 Lypd2 protein_coding protein_coding MGP_AJ_T0041171.1 MGP_AJ_G0021893.1 mouse_genomes_project 15 71856659 71858176 - Lypd2 protein_coding retained_intron MGP_AJ_T0047665.1 MGP_AJ_G0023665.1 mouse_genomes_project 17 36511221 36512228 - MGP_AJ_P0047665 Olfr99 protein_coding protein_coding MGP_AJ_T0102374.1 MGP_AJ_G0040116.1 mouse_genomes_project 17 16740797 16742111 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0045765.1 MGP_AJ_G0023213.1 mouse_genomes_project 17 20939449 20954331 + MGP_AJ_P0045765 Gm5493 protein_coding protein_coding MGP_AJ_T0047312.1 MGP_AJ_G0023574.1 mouse_genomes_project 17 34050649 34052039 + MGP_AJ_P0047312 Ly6g6e protein_coding protein_coding MGP_AJ_T0047313.1 MGP_AJ_G0023574.1 mouse_genomes_project 17 34050678 34052295 + MGP_AJ_P0047313 Ly6g6e protein_coding protein_coding MGP_AJ_T0047314.1 MGP_AJ_G0023574.1 mouse_genomes_project 17 34050684 34052545 + MGP_AJ_P0047314 Ly6g6e protein_coding protein_coding MGP_AJ_T0047315.1 MGP_AJ_G0023574.1 mouse_genomes_project 17 34050906 34052030 + MGP_AJ_P0047315 Ly6g6e protein_coding protein_coding MGP_AJ_T0048079.1 MGP_AJ_G0023819.1 mouse_genomes_project 17 47825420 47886848 - MGP_AJ_P0048079 Foxp4 protein_coding protein_coding MGP_AJ_T0048080.1 MGP_AJ_G0023819.1 mouse_genomes_project 17 47826051 47886638 - MGP_AJ_P0048080 Foxp4 protein_coding protein_coding MGP_AJ_T0048081.1 MGP_AJ_G0023819.1 mouse_genomes_project 17 47826051 47886603 - MGP_AJ_P0048081 Foxp4 protein_coding protein_coding MGP_AJ_T0048082.1 MGP_AJ_G0023819.1 mouse_genomes_project 17 47826055 47886679 - MGP_AJ_P0048082 Foxp4 protein_coding protein_coding MGP_AJ_T0048083.1 MGP_AJ_G0023819.1 mouse_genomes_project 17 47836497 47846678 - Foxp4 protein_coding processed_transcript MGP_AJ_T0048084.1 MGP_AJ_G0023819.1 mouse_genomes_project 17 47836692 47837166 - Foxp4 protein_coding retained_intron MGP_AJ_T0048085.1 MGP_AJ_G0023819.1 mouse_genomes_project 17 47838551 47846384 - Foxp4 protein_coding retained_intron MGP_AJ_T0048086.1 MGP_AJ_G0023819.1 mouse_genomes_project 17 47846130 47886629 - Foxp4 protein_coding retained_intron MGP_AJ_T0013272.1 MGP_AJ_G0011367.1 mouse_genomes_project 17 53721193 53721846 - processed_pseudogene processed_pseudogene MGP_AJ_T0003713.1 MGP_AJ_G0003347.1 mouse_genomes_project 17 10235679 10358024 + antisense antisense MGP_AJ_T0003714.1 MGP_AJ_G0003347.1 mouse_genomes_project 17 10235698 10327765 + antisense antisense MGP_AJ_T0003715.1 MGP_AJ_G0003347.1 mouse_genomes_project 17 10235742 10313073 + antisense antisense MGP_AJ_T0003716.1 MGP_AJ_G0003347.1 mouse_genomes_project 17 10235753 10312233 + antisense antisense MGP_AJ_T0003717.1 MGP_AJ_G0003347.1 mouse_genomes_project 17 10235766 10327666 + antisense antisense MGP_AJ_T0003718.1 MGP_AJ_G0003347.1 mouse_genomes_project 17 10313446 10327850 + antisense antisense MGP_AJ_T0010212.1 MGP_AJ_G0008334.1 mouse_genomes_project 17 46475860 46475923 - Mir6976 miRNA miRNA MGP_AJ_T0046811.1 MGP_AJ_G0023467.1 mouse_genomes_project 17 31451482 31469289 + MGP_AJ_P0046811 Cyp4f40 protein_coding protein_coding MGP_AJ_T0102387.1 MGP_AJ_G0040129.1 mouse_genomes_project 17 18886328 18886752 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0046872.1 MGP_AJ_G0023489.1 mouse_genomes_project 17 32332300 32381265 + MGP_AJ_P0046872 Myo1f protein_coding protein_coding MGP_AJ_T0046873.1 MGP_AJ_G0023489.1 mouse_genomes_project 17 32332326 32381261 + MGP_AJ_P0046873 Myo1f protein_coding nonsense_mediated_decay MGP_AJ_T0046874.1 MGP_AJ_G0023489.1 mouse_genomes_project 17 32332346 32352135 + MGP_AJ_P0046874 Myo1f protein_coding protein_coding MGP_AJ_T0046875.1 MGP_AJ_G0023489.1 mouse_genomes_project 17 32356579 32381267 + Myo1f protein_coding retained_intron MGP_AJ_T0013251.1 MGP_AJ_G0011346.1 mouse_genomes_project 17 36372771 36373368 - processed_pseudogene processed_pseudogene MGP_AJ_T0102435.1 MGP_AJ_G0040177.1 mouse_genomes_project 17 36600319 36601246 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0046817.1 MGP_AJ_G0023469.1 mouse_genomes_project 17 31564185 31583397 - MGP_AJ_P0046817 Zfp871 protein_coding protein_coding MGP_AJ_T0046818.1 MGP_AJ_G0023469.1 mouse_genomes_project 17 31570379 31583507 - Zfp871 protein_coding processed_transcript MGP_AJ_T0046160.1 MGP_AJ_G0023318.1 mouse_genomes_project 17 23951204 24034342 + MGP_AJ_P0046160 Lmf1 protein_coding protein_coding MGP_AJ_T0046161.1 MGP_AJ_G0023318.1 mouse_genomes_project 17 23951207 24034342 + MGP_AJ_P0046161 Lmf1 protein_coding protein_coding MGP_AJ_T0046162.1 MGP_AJ_G0023318.1 mouse_genomes_project 17 23951217 23970572 + Lmf1 protein_coding retained_intron MGP_AJ_T0046163.1 MGP_AJ_G0023318.1 mouse_genomes_project 17 23951217 24034239 + MGP_AJ_P0046163 Lmf1 protein_coding nonsense_mediated_decay MGP_AJ_T0046164.1 MGP_AJ_G0023318.1 mouse_genomes_project 17 23951227 24026787 + MGP_AJ_P0046164 Lmf1 protein_coding protein_coding MGP_AJ_T0046165.1 MGP_AJ_G0023318.1 mouse_genomes_project 17 23951229 23961248 + Lmf1 protein_coding retained_intron MGP_AJ_T0046166.1 MGP_AJ_G0023318.1 mouse_genomes_project 17 23951229 24007319 + Lmf1 protein_coding retained_intron MGP_AJ_T0046167.1 MGP_AJ_G0023318.1 mouse_genomes_project 17 23951229 24019914 + Lmf1 protein_coding retained_intron MGP_AJ_T0046168.1 MGP_AJ_G0023318.1 mouse_genomes_project 17 23951350 24003157 + Lmf1 protein_coding processed_transcript MGP_AJ_T0046169.1 MGP_AJ_G0023318.1 mouse_genomes_project 17 24027347 24028381 + MGP_AJ_P0046169 Lmf1 protein_coding protein_coding MGP_AJ_T0048335.1 MGP_AJ_G0023915.1 mouse_genomes_project 17 57274630 57278411 - MGP_AJ_P0048335 Cd70 protein_coding protein_coding MGP_AJ_T0006943.1 MGP_AJ_G0005711.1 mouse_genomes_project 17 32817100 32817205 - Gm26940 lincRNA lincRNA MGP_AJ_T0048191.1 MGP_AJ_G0023851.1 mouse_genomes_project 17 53894713 53911310 - MGP_AJ_P0048191 Sult1c2 protein_coding protein_coding MGP_AJ_T0045686.1 MGP_AJ_G0023162.1 mouse_genomes_project 17 16674852 16697435 + MGP_AJ_P0045686 protein_coding protein_coding MGP_AJ_T0046915.1 MGP_AJ_G0023497.1 mouse_genomes_project 17 32597926 32603388 - MGP_AJ_P0046915 Rps28 protein_coding protein_coding MGP_AJ_T0046918.1 MGP_AJ_G0023497.1 mouse_genomes_project 17 32601934 32603458 - MGP_AJ_P0046918 Rps28 protein_coding protein_coding MGP_AJ_T0046919.1 MGP_AJ_G0023497.1 mouse_genomes_project 17 32601935 32603242 - MGP_AJ_P0046919 Rps28 protein_coding protein_coding MGP_AJ_T0046920.1 MGP_AJ_G0023497.1 mouse_genomes_project 17 32601948 32603361 - Rps28 protein_coding processed_transcript MGP_AJ_T0046921.1 MGP_AJ_G0023497.1 mouse_genomes_project 17 32601948 32603458 - MGP_AJ_P0046921 Rps28 protein_coding protein_coding MGP_AJ_T0046922.1 MGP_AJ_G0023497.1 mouse_genomes_project 17 32601950 32603372 - MGP_AJ_P0046922 Rps28 protein_coding protein_coding MGP_AJ_T0046923.1 MGP_AJ_G0023497.1 mouse_genomes_project 17 32602484 32603380 - Rps28 protein_coding retained_intron MGP_AJ_T0003757.1 MGP_AJ_G0003377.1 mouse_genomes_project 17 34781820 34786397 + Gm4577 antisense antisense MGP_AJ_T0006954.1 MGP_AJ_G0005722.1 mouse_genomes_project 17 37051282 37053883 + Gm20524 lincRNA lincRNA MGP_AJ_T0102376.1 MGP_AJ_G0040118.1 mouse_genomes_project 17 17329761 17330959 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0045746.1 MGP_AJ_G0023205.1 mouse_genomes_project 17 19952341 20002588 - MGP_AJ_P0045746 protein_coding protein_coding MGP_AJ_T0098626.1 MGP_AJ_G0036610.1 mouse_genomes_project 17 95281956 95282063 + Gm23964 rRNA rRNA MGP_AJ_T0017563.1 MGP_AJ_G0015324.1 mouse_genomes_project 17 33512831 33525388 - Gm20460 processed_transcript processed_transcript MGP_AJ_T0048220.1 MGP_AJ_G0023868.1 mouse_genomes_project 17 56088428 56109498 - MGP_AJ_P0048220 Sh3gl1 protein_coding protein_coding MGP_AJ_T0011439.1 MGP_AJ_G0009561.1 mouse_genomes_project 17 86023173 86023496 + Gm27283 misc_RNA misc_RNA MGP_AJ_T0017556.1 MGP_AJ_G0015317.1 mouse_genomes_project 17 23942242 23947095 + 2810468N07Rik processed_transcript processed_transcript MGP_AJ_T0102436.1 MGP_AJ_G0040178.1 mouse_genomes_project 17 36618034 36618403 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0048683.1 MGP_AJ_G0024039.1 mouse_genomes_project 17 85014485 85044308 + MGP_AJ_P0048683 Dync2li1 protein_coding protein_coding MGP_AJ_T0047055.1 MGP_AJ_G0023522.1 mouse_genomes_project 17 32929736 32933652 + MGP_AJ_P0047055 H2-DMa protein_coding protein_coding MGP_AJ_T0047056.1 MGP_AJ_G0023522.1 mouse_genomes_project 17 32931577 32932731 + H2-DMa protein_coding retained_intron MGP_AJ_T0046352.1 MGP_AJ_G0023362.1 mouse_genomes_project 17 24954862 25050653 + MGP_AJ_P0046352 Ergic1 protein_coding protein_coding MGP_AJ_T0046353.1 MGP_AJ_G0023362.1 mouse_genomes_project 17 24954891 24962388 + Ergic1 protein_coding processed_transcript MGP_AJ_T0046354.1 MGP_AJ_G0023362.1 mouse_genomes_project 17 24954918 25048896 + Ergic1 protein_coding processed_transcript MGP_AJ_T0046355.1 MGP_AJ_G0023362.1 mouse_genomes_project 17 25008345 25028199 + MGP_AJ_P0046355 Ergic1 protein_coding nonsense_mediated_decay MGP_AJ_T0046356.1 MGP_AJ_G0023362.1 mouse_genomes_project 17 25015267 25048896 + Ergic1 protein_coding processed_transcript MGP_AJ_T0046357.1 MGP_AJ_G0023362.1 mouse_genomes_project 17 25017989 25037604 + Ergic1 protein_coding retained_intron MGP_AJ_T0046358.1 MGP_AJ_G0023362.1 mouse_genomes_project 17 25032468 25049074 + MGP_AJ_P0046358 Ergic1 protein_coding protein_coding MGP_AJ_T0045846.1 MGP_AJ_G0023241.1 mouse_genomes_project 17 22285019 22290253 + MGP_AJ_P0045846 Sbp protein_coding protein_coding MGP_AJ_T0045847.1 MGP_AJ_G0023241.1 mouse_genomes_project 17 22285417 22290600 + MGP_AJ_P0045847 Sbp protein_coding protein_coding MGP_AJ_T0045682.1 MGP_AJ_G0023158.1 mouse_genomes_project 17 15983308 16012300 + MGP_AJ_P0045682 protein_coding protein_coding MGP_AJ_T0046133.1 MGP_AJ_G0023309.1 mouse_genomes_project 17 23680188 23683425 + MGP_AJ_P0046133 Prss28 protein_coding protein_coding MGP_AJ_T0045905.1 MGP_AJ_G0023256.1 mouse_genomes_project 17 22705572 22751471 + Abca3 protein_coding retained_intron MGP_AJ_T0045906.1 MGP_AJ_G0023256.1 mouse_genomes_project 17 22705645 22763754 + MGP_AJ_P0045906 Abca3 protein_coding protein_coding MGP_AJ_T0045907.1 MGP_AJ_G0023256.1 mouse_genomes_project 17 22705668 22763754 + MGP_AJ_P0045907 Abca3 protein_coding protein_coding MGP_AJ_T0045908.1 MGP_AJ_G0023256.1 mouse_genomes_project 17 22705713 22754651 + Abca3 protein_coding retained_intron MGP_AJ_T0045909.1 MGP_AJ_G0023256.1 mouse_genomes_project 17 22705713 22731511 + Abca3 protein_coding retained_intron MGP_AJ_T0045910.1 MGP_AJ_G0023256.1 mouse_genomes_project 17 22705725 22714545 + Abca3 protein_coding processed_transcript MGP_AJ_T0045911.1 MGP_AJ_G0023256.1 mouse_genomes_project 17 22705730 22737062 + Abca3 protein_coding retained_intron MGP_AJ_T0045912.1 MGP_AJ_G0023256.1 mouse_genomes_project 17 22718827 22763754 + MGP_AJ_P0045912 Abca3 protein_coding protein_coding MGP_AJ_T0048782.1 MGP_AJ_G0024073.1 mouse_genomes_project 17 89265055 89316290 - MGP_AJ_P0048782 Lhcgr protein_coding protein_coding MGP_AJ_T0045964.1 MGP_AJ_G0023268.1 mouse_genomes_project 17 22954690 22990447 - MGP_AJ_P0045964 Tsc2 protein_coding protein_coding MGP_AJ_T0045965.1 MGP_AJ_G0023268.1 mouse_genomes_project 17 22955262 22990414 - MGP_AJ_P0045965 Tsc2 protein_coding unknown_likely_coding MGP_AJ_T0048291.1 MGP_AJ_G0023889.1 mouse_genomes_project 17 56725825 56726674 + MGP_AJ_P0048291 Rpl36 protein_coding protein_coding MGP_AJ_T0048070.1 MGP_AJ_G0023818.1 mouse_genomes_project 17 47769827 47787344 - MGP_AJ_P0048070 Mdfi protein_coding protein_coding MGP_AJ_T0048071.1 MGP_AJ_G0023818.1 mouse_genomes_project 17 47769827 47788794 - MGP_AJ_P0048071 Mdfi protein_coding protein_coding MGP_AJ_T0048072.1 MGP_AJ_G0023818.1 mouse_genomes_project 17 47769835 47787394 - MGP_AJ_P0048072 Mdfi protein_coding protein_coding MGP_AJ_T0048073.1 MGP_AJ_G0023818.1 mouse_genomes_project 17 47770420 47787361 - Mdfi protein_coding processed_transcript MGP_AJ_T0048074.1 MGP_AJ_G0023818.1 mouse_genomes_project 17 47770538 47787272 - MGP_AJ_P0048074 Mdfi protein_coding protein_coding MGP_AJ_T0048075.1 MGP_AJ_G0023818.1 mouse_genomes_project 17 47774291 47787364 - Mdfi protein_coding retained_intron MGP_AJ_T0048076.1 MGP_AJ_G0023818.1 mouse_genomes_project 17 47775330 47787375 - MGP_AJ_P0048076 Mdfi protein_coding protein_coding MGP_AJ_T0048077.1 MGP_AJ_G0023818.1 mouse_genomes_project 17 47775419 47787348 - MGP_AJ_P0048077 Mdfi protein_coding protein_coding MGP_AJ_T0048078.1 MGP_AJ_G0023818.1 mouse_genomes_project 17 47778770 47787333 - MGP_AJ_P0048078 Mdfi protein_coding protein_coding MGP_AJ_T0099654.1 MGP_AJ_G0037620.1 mouse_genomes_project 17 36498837 36499000 - Gm25104 snRNA snRNA MGP_AJ_T0048204.1 MGP_AJ_G0023861.1 mouse_genomes_project 17 56000874 56018010 - MGP_AJ_P0048204 Zfp119b protein_coding protein_coding MGP_AJ_T0048035.1 MGP_AJ_G0023811.1 mouse_genomes_project 17 47583079 47638749 + MGP_AJ_P0048035 Usp49 protein_coding protein_coding MGP_AJ_T0048036.1 MGP_AJ_G0023811.1 mouse_genomes_project 17 47601704 47624141 + MGP_AJ_P0048036 Usp49 protein_coding protein_coding MGP_AJ_T0048037.1 MGP_AJ_G0023811.1 mouse_genomes_project 17 47624676 47633013 + MGP_AJ_P0048037 Usp49 protein_coding protein_coding MGP_AJ_T0048038.1 MGP_AJ_G0023811.1 mouse_genomes_project 17 47625257 47632685 + MGP_AJ_P0048038 Usp49 protein_coding nonsense_mediated_decay MGP_AJ_T0010207.1 MGP_AJ_G0008329.1 mouse_genomes_project 17 34947941 34948037 - Gm28033 miRNA miRNA MGP_AJ_T0048531.1 MGP_AJ_G0023975.1 mouse_genomes_project 17 73159364 73183941 + MGP_AJ_P0048531 Lbh protein_coding protein_coding MGP_AJ_T0048532.1 MGP_AJ_G0023975.1 mouse_genomes_project 17 73162378 73180551 + MGP_AJ_P0048532 Lbh protein_coding nonsense_mediated_decay MGP_AJ_T0047798.1 MGP_AJ_G0023747.1 mouse_genomes_project 17 45425241 45444386 + MGP_AJ_P0047798 Tcte1 protein_coding protein_coding MGP_AJ_T0013274.1 MGP_AJ_G0011369.1 mouse_genomes_project 17 53767725 53768726 + processed_pseudogene processed_pseudogene MGP_AJ_T0047417.1 MGP_AJ_G0023601.1 mouse_genomes_project 17 34676136 34729056 + MGP_AJ_P0047417 Sfta2 protein_coding protein_coding MGP_AJ_T0047418.1 MGP_AJ_G0023601.1 mouse_genomes_project 17 34676165 34729054 + Sfta2 protein_coding processed_transcript MGP_AJ_T0047421.1 MGP_AJ_G0023601.1 mouse_genomes_project 17 34728196 34729060 + MGP_AJ_P0047421 Sfta2 protein_coding protein_coding MGP_AJ_T0047951.1 MGP_AJ_G0023779.1 mouse_genomes_project 17 46486482 46561128 - MGP_AJ_P0047951 Ptk7 protein_coding protein_coding MGP_AJ_T0045857.1 MGP_AJ_G0023247.1 mouse_genomes_project 17 22400367 22425883 - MGP_AJ_P0045857 Kctd5 protein_coding protein_coding MGP_AJ_T0045858.1 MGP_AJ_G0023247.1 mouse_genomes_project 17 22408434 22420687 - Kctd5 protein_coding processed_transcript MGP_AJ_T0047474.1 MGP_AJ_G0023610.1 mouse_genomes_project 17 34921382 34939281 + MGP_AJ_P0047474 Mdc1 protein_coding protein_coding MGP_AJ_T0047475.1 MGP_AJ_G0023610.1 mouse_genomes_project 17 34921509 34939287 + MGP_AJ_P0047475 Mdc1 protein_coding unknown_likely_coding MGP_AJ_T0047476.1 MGP_AJ_G0023610.1 mouse_genomes_project 17 34921543 34925872 + MGP_AJ_P0047476 Mdc1 protein_coding protein_coding MGP_AJ_T0047550.1 MGP_AJ_G0023622.1 mouse_genomes_project 17 35159061 35161738 - MGP_AJ_P0047550 H2-T23 protein_coding protein_coding MGP_AJ_T0047551.1 MGP_AJ_G0023622.1 mouse_genomes_project 17 35160641 35161613 - H2-T23 protein_coding retained_intron MGP_AJ_T0045431.1 MGP_AJ_G0023082.1 mouse_genomes_project 17 3525997 3542367 + MGP_AJ_P0045431 protein_coding protein_coding MGP_AJ_T0046213.1 MGP_AJ_G0023332.1 mouse_genomes_project 17 24203538 24206264 - MGP_AJ_P0046213 Stub1 protein_coding protein_coding MGP_AJ_T0045676.1 MGP_AJ_G0023153.1 mouse_genomes_project 17 15550243 15551581 + MGP_AJ_P0045676 protein_coding protein_coding MGP_AJ_T0047302.1 MGP_AJ_G0023571.1 mouse_genomes_project 17 34036461 34039958 - MGP_AJ_P0047302 G6b protein_coding protein_coding MGP_AJ_T0047303.1 MGP_AJ_G0023571.1 mouse_genomes_project 17 34038094 34039944 - MGP_AJ_P0047303 G6b protein_coding protein_coding MGP_AJ_T0047658.1 MGP_AJ_G0023658.1 mouse_genomes_project 17 36425623 36427827 + MGP_AJ_P0047658 Ubd protein_coding protein_coding MGP_AJ_T0047524.1 MGP_AJ_G0023617.1 mouse_genomes_project 17 34999801 35001132 + Ppp1r10 protein_coding retained_intron MGP_AJ_T0047525.1 MGP_AJ_G0023617.1 mouse_genomes_project 17 34999933 35043400 + MGP_AJ_P0047525 Ppp1r10 protein_coding protein_coding MGP_AJ_T0047526.1 MGP_AJ_G0023617.1 mouse_genomes_project 17 34999946 35000708 + Ppp1r10 protein_coding processed_transcript MGP_AJ_T0047527.1 MGP_AJ_G0023617.1 mouse_genomes_project 17 35000149 35001726 + Ppp1r10 protein_coding retained_intron MGP_AJ_T0047528.1 MGP_AJ_G0023617.1 mouse_genomes_project 17 35000365 35007687 + MGP_AJ_P0047528 Ppp1r10 protein_coding protein_coding MGP_AJ_T0047529.1 MGP_AJ_G0023617.1 mouse_genomes_project 17 35000563 35043400 + MGP_AJ_P0047529 Ppp1r10 protein_coding protein_coding MGP_AJ_T0047530.1 MGP_AJ_G0023617.1 mouse_genomes_project 17 35009891 35011651 + Ppp1r10 protein_coding retained_intron MGP_AJ_T0046345.1 MGP_AJ_G0023359.1 mouse_genomes_project 17 24804544 24831475 + MGP_AJ_P0046345 Neurl1b protein_coding protein_coding MGP_AJ_T0046346.1 MGP_AJ_G0023359.1 mouse_genomes_project 17 24804544 24831475 + MGP_AJ_P0046346 Neurl1b protein_coding protein_coding MGP_AJ_T0046347.1 MGP_AJ_G0023359.1 mouse_genomes_project 17 24804625 24835973 + MGP_AJ_P0046347 Neurl1b protein_coding protein_coding MGP_AJ_T0047733.1 MGP_AJ_G0023719.1 mouse_genomes_project 17 40663048 40691772 + MGP_AJ_P0047733 Rhag protein_coding protein_coding MGP_AJ_T0048577.1 MGP_AJ_G0023989.1 mouse_genomes_project 17 75008354 75146771 + MGP_AJ_P0048577 Ttc27 protein_coding protein_coding MGP_AJ_T0006958.1 MGP_AJ_G0005725.1 mouse_genomes_project 17 46183530 46190079 + Gm26785 lincRNA lincRNA MGP_AJ_T0102438.1 MGP_AJ_G0040180.1 mouse_genomes_project 17 36630193 36631032 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0013240.1 MGP_AJ_G0011335.1 mouse_genomes_project 17 35287959 35288503 + processed_pseudogene processed_pseudogene MGP_AJ_T0102388.1 MGP_AJ_G0040130.1 mouse_genomes_project 17 18987699 18997157 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0047716.1 MGP_AJ_G0023706.1 mouse_genomes_project 17 38676993 38860904 + MGP_AJ_P0047716 protein_coding protein_coding MGP_AJ_T0102372.1 MGP_AJ_G0040114.1 mouse_genomes_project 17 16463538 16463664 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0047402.1 MGP_AJ_G0023596.1 mouse_genomes_project 17 34583583 34587649 - MGP_AJ_P0047402 Tcf19 protein_coding protein_coding MGP_AJ_T0047403.1 MGP_AJ_G0023596.1 mouse_genomes_project 17 34583586 34587610 - MGP_AJ_P0047403 Tcf19 protein_coding protein_coding MGP_AJ_T0047404.1 MGP_AJ_G0023596.1 mouse_genomes_project 17 34585479 34587645 - MGP_AJ_P0047404 Tcf19 protein_coding protein_coding MGP_AJ_T0047405.1 MGP_AJ_G0023596.1 mouse_genomes_project 17 34585643 34587372 - MGP_AJ_P0047405 Tcf19 protein_coding protein_coding MGP_AJ_T0048533.1 MGP_AJ_G0023976.1 mouse_genomes_project 17 73353506 73406823 + MGP_AJ_P0048533 Lclat1 protein_coding protein_coding MGP_AJ_T0048534.1 MGP_AJ_G0023976.1 mouse_genomes_project 17 73353509 73441872 + MGP_AJ_P0048534 Lclat1 protein_coding protein_coding MGP_AJ_T0048535.1 MGP_AJ_G0023976.1 mouse_genomes_project 17 73353515 73486874 + MGP_AJ_P0048535 Lclat1 protein_coding protein_coding MGP_AJ_T0048536.1 MGP_AJ_G0023976.1 mouse_genomes_project 17 73407820 73483422 + Lclat1 protein_coding processed_transcript MGP_AJ_T0048537.1 MGP_AJ_G0023976.1 mouse_genomes_project 17 73449268 73483885 + Lclat1 protein_coding processed_transcript MGP_AJ_T0006971.1 MGP_AJ_G0005732.1 mouse_genomes_project 17 56023282 56030588 - Gm16712 lincRNA lincRNA MGP_AJ_T0045659.1 MGP_AJ_G0023149.1 mouse_genomes_project 17 15482311 15484020 + Spaca6 protein_coding processed_transcript MGP_AJ_T0045660.1 MGP_AJ_G0023149.1 mouse_genomes_project 17 15482485 15483653 + Spaca6 protein_coding retained_intron MGP_AJ_T0045661.1 MGP_AJ_G0023149.1 mouse_genomes_project 17 15482596 15490682 + MGP_AJ_P0045661 Spaca6 protein_coding protein_coding MGP_AJ_T0045662.1 MGP_AJ_G0023149.1 mouse_genomes_project 17 15482656 15494618 + MGP_AJ_P0045662 Spaca6 protein_coding nonsense_mediated_decay MGP_AJ_T0045663.1 MGP_AJ_G0023149.1 mouse_genomes_project 17 15482772 15490121 + Spaca6 protein_coding processed_transcript MGP_AJ_T0045664.1 MGP_AJ_G0023149.1 mouse_genomes_project 17 15482772 15490121 + Spaca6 protein_coding retained_intron MGP_AJ_T0045665.1 MGP_AJ_G0023149.1 mouse_genomes_project 17 15483036 15489335 + MGP_AJ_P0045665 Spaca6 protein_coding protein_coding MGP_AJ_T0045666.1 MGP_AJ_G0023149.1 mouse_genomes_project 17 15483621 15487765 + Spaca6 protein_coding retained_intron MGP_AJ_T0045667.1 MGP_AJ_G0023149.1 mouse_genomes_project 17 15484530 15488637 + Spaca6 protein_coding retained_intron MGP_AJ_T0045668.1 MGP_AJ_G0023149.1 mouse_genomes_project 17 15487560 15490134 + Spaca6 protein_coding retained_intron MGP_AJ_T0045669.1 MGP_AJ_G0023149.1 mouse_genomes_project 17 15489115 15490682 + Spaca6 protein_coding retained_intron MGP_AJ_T0045670.1 MGP_AJ_G0023149.1 mouse_genomes_project 17 15489305 15490678 + MGP_AJ_P0045670 Spaca6 protein_coding nonsense_mediated_decay MGP_AJ_T0045671.1 MGP_AJ_G0023149.1 mouse_genomes_project 17 15489892 15490682 + Spaca6 protein_coding retained_intron MGP_AJ_T0045672.1 MGP_AJ_G0023149.1 mouse_genomes_project 17 15490182 15490682 + Spaca6 protein_coding retained_intron MGP_AJ_T0048005.1 MGP_AJ_G0023803.1 mouse_genomes_project 17 47352143 47352576 + MGP_AJ_P0048005 protein_coding protein_coding MGP_AJ_T0048157.1 MGP_AJ_G0023841.1 mouse_genomes_project 17 50292048 50306244 - MGP_AJ_P0048157 Dazl protein_coding protein_coding MGP_AJ_T0048158.1 MGP_AJ_G0023841.1 mouse_genomes_project 17 50293900 50305592 - MGP_AJ_P0048158 Dazl protein_coding unknown_likely_coding MGP_AJ_T0006923.1 MGP_AJ_G0005696.1 mouse_genomes_project 17 25797595 25799961 + Gm10505 lincRNA lincRNA MGP_AJ_T0000982.1 MGP_AJ_G0000913.1 mouse_genomes_project 17 30280254 30283511 - TEC TEC MGP_AJ_T0099668.1 MGP_AJ_G0037634.1 mouse_genomes_project 17 73229643 73229750 + Gm23649 snRNA snRNA MGP_AJ_T0046134.1 MGP_AJ_G0023310.1 mouse_genomes_project 17 23690125 23694568 + MGP_AJ_P0046134 Prss29 protein_coding protein_coding MGP_AJ_T0046406.1 MGP_AJ_G0023375.1 mouse_genomes_project 17 25588439 25611880 - MGP_AJ_P0046406 Ip6k3 protein_coding protein_coding MGP_AJ_T0046749.1 MGP_AJ_G0023454.1 mouse_genomes_project 17 30802305 30829191 + MGP_AJ_P0046749 Rrp1b protein_coding protein_coding MGP_AJ_T0046750.1 MGP_AJ_G0023454.1 mouse_genomes_project 17 30802608 30814241 + Rrp1b protein_coding retained_intron MGP_AJ_T0046751.1 MGP_AJ_G0023454.1 mouse_genomes_project 17 30802634 30814234 + MGP_AJ_P0046751 Rrp1b protein_coding nonsense_mediated_decay MGP_AJ_T0046752.1 MGP_AJ_G0023454.1 mouse_genomes_project 17 30814603 30829182 + Rrp1b protein_coding retained_intron MGP_AJ_T0046753.1 MGP_AJ_G0023454.1 mouse_genomes_project 17 30815125 30818095 + Rrp1b protein_coding retained_intron MGP_AJ_T0046754.1 MGP_AJ_G0023454.1 mouse_genomes_project 17 30816343 30817974 + Rrp1b protein_coding retained_intron MGP_AJ_T0046755.1 MGP_AJ_G0023454.1 mouse_genomes_project 17 30818098 30822916 + MGP_AJ_P0046755 Rrp1b protein_coding nonsense_mediated_decay MGP_AJ_T0046756.1 MGP_AJ_G0023454.1 mouse_genomes_project 17 30818566 30822929 + Rrp1b protein_coding retained_intron MGP_AJ_T0046757.1 MGP_AJ_G0023454.1 mouse_genomes_project 17 30822232 30823345 + Rrp1b protein_coding processed_transcript MGP_AJ_T0046758.1 MGP_AJ_G0023454.1 mouse_genomes_project 17 30824602 30826887 + Rrp1b protein_coding retained_intron MGP_AJ_T0046759.1 MGP_AJ_G0023454.1 mouse_genomes_project 17 30825481 30826980 + Rrp1b protein_coding retained_intron MGP_AJ_T0048001.1 MGP_AJ_G0023800.1 mouse_genomes_project 17 47325895 47333454 + MGP_AJ_P0048001 Guca1b protein_coding protein_coding MGP_AJ_T0048002.1 MGP_AJ_G0023800.1 mouse_genomes_project 17 47325906 47332580 + MGP_AJ_P0048002 Guca1b protein_coding protein_coding MGP_AJ_T0047988.1 MGP_AJ_G0023797.1 mouse_genomes_project 17 46873428 46954269 - MGP_AJ_P0047988 Ubr2 protein_coding protein_coding MGP_AJ_T0047989.1 MGP_AJ_G0023797.1 mouse_genomes_project 17 46873428 46954269 - MGP_AJ_P0047989 Ubr2 protein_coding protein_coding MGP_AJ_T0047990.1 MGP_AJ_G0023797.1 mouse_genomes_project 17 46875495 46953956 - MGP_AJ_P0047990 Ubr2 protein_coding unknown_likely_coding MGP_AJ_T0047253.1 MGP_AJ_G0023562.1 mouse_genomes_project 17 33930430 33946172 - MGP_AJ_P0047253 Hspa1b protein_coding protein_coding MGP_AJ_T0046680.1 MGP_AJ_G0023435.1 mouse_genomes_project 17 29257809 29563715 + MGP_AJ_P0046680 Dnah8 protein_coding protein_coding MGP_AJ_T0047964.1 MGP_AJ_G0023783.1 mouse_genomes_project 17 46599422 46606773 - MGP_AJ_P0047964 Rrp36 protein_coding protein_coding MGP_AJ_T0046451.1 MGP_AJ_G0023386.1 mouse_genomes_project 17 26305630 26317780 + MGP_AJ_P0046451 Snrpc protein_coding protein_coding MGP_AJ_T0046452.1 MGP_AJ_G0023386.1 mouse_genomes_project 17 26305790 26317784 + Snrpc protein_coding retained_intron MGP_AJ_T0013244.1 MGP_AJ_G0011339.1 mouse_genomes_project 17 35397060 35397373 - processed_pseudogene processed_pseudogene MGP_AJ_T0010184.1 MGP_AJ_G0008306.1 mouse_genomes_project 17 25365474 25365542 + Mir6968 miRNA miRNA MGP_AJ_T0047324.1 MGP_AJ_G0023577.1 mouse_genomes_project 17 34081717 34085645 + MGP_AJ_P0047324 Ly6g5c protein_coding protein_coding MGP_AJ_T0048734.1 MGP_AJ_G0024060.1 mouse_genomes_project 17 87743078 87842930 + MGP_AJ_P0048734 Ttc7 protein_coding protein_coding MGP_AJ_T0048735.1 MGP_AJ_G0024060.1 mouse_genomes_project 17 87743085 87753126 + Ttc7 protein_coding processed_transcript MGP_AJ_T0048736.1 MGP_AJ_G0024060.1 mouse_genomes_project 17 87743097 87832969 + MGP_AJ_P0048736 Ttc7 protein_coding protein_coding MGP_AJ_T0048737.1 MGP_AJ_G0024060.1 mouse_genomes_project 17 87743143 87822988 + MGP_AJ_P0048737 Ttc7 protein_coding nonsense_mediated_decay MGP_AJ_T0048738.1 MGP_AJ_G0024060.1 mouse_genomes_project 17 87753007 87841247 + MGP_AJ_P0048738 Ttc7 protein_coding nonsense_mediated_decay MGP_AJ_T0048739.1 MGP_AJ_G0024060.1 mouse_genomes_project 17 87768744 87790165 + Ttc7 protein_coding processed_transcript MGP_AJ_T0048740.1 MGP_AJ_G0024060.1 mouse_genomes_project 17 87783253 87794357 + Ttc7 protein_coding retained_intron MGP_AJ_T0048741.1 MGP_AJ_G0024060.1 mouse_genomes_project 17 87790301 87800033 + Ttc7 protein_coding processed_transcript MGP_AJ_T0048742.1 MGP_AJ_G0024060.1 mouse_genomes_project 17 87840013 87842930 + Ttc7 protein_coding processed_transcript MGP_AJ_T0003781.1 MGP_AJ_G0003396.1 mouse_genomes_project 17 59083455 59099339 + Nudt12os antisense antisense MGP_AJ_T0003782.1 MGP_AJ_G0003396.1 mouse_genomes_project 17 59083479 59112342 + Nudt12os antisense antisense MGP_AJ_T0003783.1 MGP_AJ_G0003396.1 mouse_genomes_project 17 59104589 59112090 + Nudt12os antisense antisense MGP_AJ_T0003749.1 MGP_AJ_G0003370.1 mouse_genomes_project 17 32875825 32887307 - BC051537 antisense antisense MGP_AJ_T0045973.1 MGP_AJ_G0023274.1 mouse_genomes_project 17 23057518 23059922 - MGP_AJ_P0045973 Gfer protein_coding protein_coding MGP_AJ_T0046674.1 MGP_AJ_G0023432.1 mouse_genomes_project 17 28596734 28801218 + MGP_AJ_P0046674 Zfand3 protein_coding protein_coding MGP_AJ_T0046675.1 MGP_AJ_G0023432.1 mouse_genomes_project 17 28596857 28802030 + MGP_AJ_P0046675 Zfand3 protein_coding unknown_likely_coding MGP_AJ_T0048784.1 MGP_AJ_G0024075.1 mouse_genomes_project 17 90546052 91618896 - MGP_AJ_P0048784 Nrxn1 protein_coding protein_coding MGP_AJ_T0048785.1 MGP_AJ_G0024075.1 mouse_genomes_project 17 90546065 91623050 - MGP_AJ_P0048785 Nrxn1 protein_coding protein_coding MGP_AJ_T0048786.1 MGP_AJ_G0024075.1 mouse_genomes_project 17 90547834 90600573 - MGP_AJ_P0048786 Nrxn1 protein_coding protein_coding MGP_AJ_T0048787.1 MGP_AJ_G0024075.1 mouse_genomes_project 17 90547836 91618904 - MGP_AJ_P0048787 Nrxn1 protein_coding protein_coding MGP_AJ_T0048788.1 MGP_AJ_G0024075.1 mouse_genomes_project 17 90548232 90973258 - MGP_AJ_P0048788 Nrxn1 protein_coding protein_coding MGP_AJ_T0048789.1 MGP_AJ_G0024075.1 mouse_genomes_project 17 90548702 90600577 - MGP_AJ_P0048789 Nrxn1 protein_coding protein_coding MGP_AJ_T0048790.1 MGP_AJ_G0024075.1 mouse_genomes_project 17 90548729 90973272 - MGP_AJ_P0048790 Nrxn1 protein_coding protein_coding MGP_AJ_T0048791.1 MGP_AJ_G0024075.1 mouse_genomes_project 17 90549102 91618715 - MGP_AJ_P0048791 Nrxn1 protein_coding protein_coding MGP_AJ_T0048792.1 MGP_AJ_G0024075.1 mouse_genomes_project 17 90549286 90600317 - Nrxn1 protein_coding processed_transcript MGP_AJ_T0048793.1 MGP_AJ_G0024075.1 mouse_genomes_project 17 90549309 91618715 - MGP_AJ_P0048793 Nrxn1 protein_coding protein_coding MGP_AJ_T0048794.1 MGP_AJ_G0024075.1 mouse_genomes_project 17 90549325 91622712 - MGP_AJ_P0048794 Nrxn1 protein_coding protein_coding MGP_AJ_T0048795.1 MGP_AJ_G0024075.1 mouse_genomes_project 17 90549325 90973336 - MGP_AJ_P0048795 Nrxn1 protein_coding protein_coding MGP_AJ_T0048796.1 MGP_AJ_G0024075.1 mouse_genomes_project 17 90549752 90715458 - MGP_AJ_P0048796 Nrxn1 protein_coding protein_coding MGP_AJ_T0048797.1 MGP_AJ_G0024075.1 mouse_genomes_project 17 90670831 90863623 - Nrxn1 protein_coding processed_transcript MGP_AJ_T0048798.1 MGP_AJ_G0024075.1 mouse_genomes_project 17 90715323 91622782 - Nrxn1 protein_coding retained_intron MGP_AJ_T0048799.1 MGP_AJ_G0024075.1 mouse_genomes_project 17 90715323 90972212 - Nrxn1 protein_coding retained_intron MGP_AJ_T0048800.1 MGP_AJ_G0024075.1 mouse_genomes_project 17 90876903 91106010 - MGP_AJ_P0048800 Nrxn1 protein_coding protein_coding MGP_AJ_T0048801.1 MGP_AJ_G0024075.1 mouse_genomes_project 17 90877144 91106159 - MGP_AJ_P0048801 Nrxn1 protein_coding protein_coding MGP_AJ_T0048802.1 MGP_AJ_G0024075.1 mouse_genomes_project 17 90971176 90973959 - Nrxn1 protein_coding retained_intron MGP_AJ_T0048803.1 MGP_AJ_G0024075.1 mouse_genomes_project 17 91053845 91618472 - Nrxn1 protein_coding processed_transcript MGP_AJ_T0048804.1 MGP_AJ_G0024075.1 mouse_genomes_project 17 91066016 91222313 - MGP_AJ_P0048804 Nrxn1 protein_coding unknown_likely_coding MGP_AJ_T0048805.1 MGP_AJ_G0024075.1 mouse_genomes_project 17 91107202 91147109 - MGP_AJ_P0048805 Nrxn1 protein_coding protein_coding MGP_AJ_T0048806.1 MGP_AJ_G0024075.1 mouse_genomes_project 17 91107480 91218413 - MGP_AJ_P0048806 Nrxn1 protein_coding protein_coding MGP_AJ_T0048807.1 MGP_AJ_G0024075.1 mouse_genomes_project 17 91136071 91146912 - Nrxn1 protein_coding retained_intron MGP_AJ_T0048808.1 MGP_AJ_G0024075.1 mouse_genomes_project 17 91217569 91622750 - Nrxn1 protein_coding retained_intron MGP_AJ_T0048809.1 MGP_AJ_G0024075.1 mouse_genomes_project 17 91220815 91622770 - Nrxn1 protein_coding retained_intron MGP_AJ_T0048810.1 MGP_AJ_G0024075.1 mouse_genomes_project 17 91615446 91622732 - Nrxn1 protein_coding retained_intron MGP_AJ_T0048234.1 MGP_AJ_G0023874.1 mouse_genomes_project 17 56213231 56230488 - MGP_AJ_P0048234 Sema6b protein_coding protein_coding MGP_AJ_T0048235.1 MGP_AJ_G0023874.1 mouse_genomes_project 17 56213231 56223997 - MGP_AJ_P0048235 Sema6b protein_coding protein_coding MGP_AJ_T0047281.1 MGP_AJ_G0023567.1 mouse_genomes_project 17 34000204 34001814 - Sapcd1 protein_coding retained_intron MGP_AJ_T0047282.1 MGP_AJ_G0023567.1 mouse_genomes_project 17 34000204 34002069 - MGP_AJ_P0047282 Sapcd1 protein_coding nonsense_mediated_decay MGP_AJ_T0047283.1 MGP_AJ_G0023567.1 mouse_genomes_project 17 34000221 34002171 - MGP_AJ_P0047283 Sapcd1 protein_coding protein_coding MGP_AJ_T0047284.1 MGP_AJ_G0023567.1 mouse_genomes_project 17 34000509 34002171 - MGP_AJ_P0047284 Sapcd1 protein_coding nonsense_mediated_decay MGP_AJ_T0048127.1 MGP_AJ_G0023834.1 mouse_genomes_project 17 48429389 48432979 - Tspo2 protein_coding retained_intron MGP_AJ_T0048128.1 MGP_AJ_G0023834.1 mouse_genomes_project 17 48429870 48433009 - MGP_AJ_P0048128 Tspo2 protein_coding protein_coding MGP_AJ_T0048129.1 MGP_AJ_G0023834.1 mouse_genomes_project 17 48429954 48431561 - MGP_AJ_P0048129 Tspo2 protein_coding protein_coding MGP_AJ_T0048130.1 MGP_AJ_G0023834.1 mouse_genomes_project 17 48430003 48431558 - MGP_AJ_P0048130 Tspo2 protein_coding protein_coding MGP_AJ_T0048131.1 MGP_AJ_G0023834.1 mouse_genomes_project 17 48431423 48433004 - Tspo2 protein_coding processed_transcript MGP_AJ_T0045708.1 MGP_AJ_G0023183.1 mouse_genomes_project 17 18755914 18756865 + MGP_AJ_P0045708 Vmn1r230 protein_coding protein_coding MGP_AJ_T0048013.1 MGP_AJ_G0023807.1 mouse_genomes_project 17 47451103 47548791 + MGP_AJ_P0048013 Ccnd3 protein_coding protein_coding MGP_AJ_T0048014.1 MGP_AJ_G0023807.1 mouse_genomes_project 17 47451131 47548186 + MGP_AJ_P0048014 Ccnd3 protein_coding protein_coding MGP_AJ_T0048015.1 MGP_AJ_G0023807.1 mouse_genomes_project 17 47451208 47549347 + MGP_AJ_P0048015 Ccnd3 protein_coding protein_coding MGP_AJ_T0048016.1 MGP_AJ_G0023807.1 mouse_genomes_project 17 47451214 47528465 + Ccnd3 protein_coding retained_intron MGP_AJ_T0048017.1 MGP_AJ_G0023807.1 mouse_genomes_project 17 47451271 47528865 + Ccnd3 protein_coding retained_intron MGP_AJ_T0048018.1 MGP_AJ_G0023807.1 mouse_genomes_project 17 47451283 47544509 + MGP_AJ_P0048018 Ccnd3 protein_coding protein_coding MGP_AJ_T0048019.1 MGP_AJ_G0023807.1 mouse_genomes_project 17 47451292 47528637 + Ccnd3 protein_coding retained_intron MGP_AJ_T0048020.1 MGP_AJ_G0023807.1 mouse_genomes_project 17 47451293 47453964 + Ccnd3 protein_coding retained_intron MGP_AJ_T0048021.1 MGP_AJ_G0023807.1 mouse_genomes_project 17 47451293 47549369 + MGP_AJ_P0048021 Ccnd3 protein_coding protein_coding MGP_AJ_T0048022.1 MGP_AJ_G0023807.1 mouse_genomes_project 17 47544160 47548895 + Ccnd3 protein_coding retained_intron MGP_AJ_T0048023.1 MGP_AJ_G0023807.1 mouse_genomes_project 17 47544253 47548300 + MGP_AJ_P0048023 Ccnd3 protein_coding protein_coding MGP_AJ_T0048024.1 MGP_AJ_G0023807.1 mouse_genomes_project 17 47544379 47550417 + MGP_AJ_P0048024 Ccnd3 protein_coding protein_coding MGP_AJ_T0048025.1 MGP_AJ_G0023807.1 mouse_genomes_project 17 47545037 47548216 + MGP_AJ_P0048025 Ccnd3 protein_coding protein_coding MGP_AJ_T0048026.1 MGP_AJ_G0023807.1 mouse_genomes_project 17 47545480 47549583 + MGP_AJ_P0048026 Ccnd3 protein_coding protein_coding MGP_AJ_T0047176.1 MGP_AJ_G0023549.1 mouse_genomes_project 17 33558723 33593775 + MGP_AJ_P0047176 Tnxb protein_coding unknown_likely_coding MGP_AJ_T0006893.1 MGP_AJ_G0005673.1 mouse_genomes_project 17 2884075 2888254 + 3300005D01Rik lincRNA lincRNA MGP_AJ_T0006894.1 MGP_AJ_G0005673.1 mouse_genomes_project 17 2884117 2888409 + 3300005D01Rik lincRNA lincRNA MGP_AJ_T0006895.1 MGP_AJ_G0005673.1 mouse_genomes_project 17 2884909 2888601 + 3300005D01Rik lincRNA lincRNA MGP_AJ_T0006896.1 MGP_AJ_G0005673.1 mouse_genomes_project 17 2885070 2888255 + 3300005D01Rik lincRNA lincRNA MGP_AJ_T0048547.1 MGP_AJ_G0023984.1 mouse_genomes_project 17 74607915 74662376 + MGP_AJ_P0048547 Spast protein_coding protein_coding MGP_AJ_T0048548.1 MGP_AJ_G0023984.1 mouse_genomes_project 17 74607965 74662377 + MGP_AJ_P0048548 Spast protein_coding unknown_likely_coding MGP_AJ_T0048619.1 MGP_AJ_G0024006.1 mouse_genomes_project 17 79385833 79422556 + MGP_AJ_P0048619 Qpct protein_coding protein_coding MGP_AJ_T0047042.1 MGP_AJ_G0023521.1 mouse_genomes_project 17 32904381 32914087 - MGP_AJ_P0047042 Brd2 protein_coding protein_coding MGP_AJ_T0047043.1 MGP_AJ_G0023521.1 mouse_genomes_project 17 32904381 32914659 - MGP_AJ_P0047043 Brd2 protein_coding protein_coding MGP_AJ_T0047044.1 MGP_AJ_G0023521.1 mouse_genomes_project 17 32904388 32912751 - MGP_AJ_P0047044 Brd2 protein_coding nonsense_mediated_decay MGP_AJ_T0047045.1 MGP_AJ_G0023521.1 mouse_genomes_project 17 32904721 32910829 - MGP_AJ_P0047045 Brd2 protein_coding protein_coding MGP_AJ_T0047046.1 MGP_AJ_G0023521.1 mouse_genomes_project 17 32905042 32906091 - Brd2 protein_coding retained_intron MGP_AJ_T0047047.1 MGP_AJ_G0023521.1 mouse_genomes_project 17 32906117 32907308 - Brd2 protein_coding retained_intron MGP_AJ_T0047048.1 MGP_AJ_G0023521.1 mouse_genomes_project 17 32906119 32907334 - MGP_AJ_P0047048 Brd2 protein_coding protein_coding MGP_AJ_T0047049.1 MGP_AJ_G0023521.1 mouse_genomes_project 17 32906154 32907433 - MGP_AJ_P0047049 Brd2 protein_coding nonsense_mediated_decay MGP_AJ_T0047050.1 MGP_AJ_G0023521.1 mouse_genomes_project 17 32906443 32914330 - MGP_AJ_P0047050 Brd2 protein_coding protein_coding MGP_AJ_T0047051.1 MGP_AJ_G0023521.1 mouse_genomes_project 17 32907120 32907827 - Brd2 protein_coding retained_intron MGP_AJ_T0047052.1 MGP_AJ_G0023521.1 mouse_genomes_project 17 32911867 32914292 - Brd2 protein_coding processed_transcript MGP_AJ_T0047053.1 MGP_AJ_G0023521.1 mouse_genomes_project 17 32911897 32914961 - Brd2 protein_coding processed_transcript MGP_AJ_T0047054.1 MGP_AJ_G0023521.1 mouse_genomes_project 17 32912206 32914976 - Brd2 protein_coding processed_transcript MGP_AJ_T0046482.1 MGP_AJ_G0023393.1 mouse_genomes_project 17 26690886 26711325 + MGP_AJ_P0046482 Def6 protein_coding protein_coding MGP_AJ_T0046483.1 MGP_AJ_G0023393.1 mouse_genomes_project 17 26690945 26695433 + Def6 protein_coding processed_transcript MGP_AJ_T0010206.1 MGP_AJ_G0008328.1 mouse_genomes_project 17 34221425 34221542 + Mir8094 miRNA miRNA MGP_AJ_T0045706.1 MGP_AJ_G0023181.1 mouse_genomes_project 17 18683409 18684852 - MGP_AJ_P0045706 Vmn1r228 protein_coding protein_coding MGP_AJ_T0045813.1 MGP_AJ_G0023228.1 mouse_genomes_project 17 21997739 22001894 - MGP_AJ_P0045813 Paqr4 protein_coding protein_coding MGP_AJ_T0046801.1 MGP_AJ_G0023465.1 mouse_genomes_project 17 31305839 31330833 + MGP_AJ_P0046801 Cyp4f16 protein_coding protein_coding MGP_AJ_T0046802.1 MGP_AJ_G0023465.1 mouse_genomes_project 17 31305850 31330832 + MGP_AJ_P0046802 Cyp4f16 protein_coding protein_coding MGP_AJ_T0046803.1 MGP_AJ_G0023465.1 mouse_genomes_project 17 31305858 31330833 + MGP_AJ_P0046803 Cyp4f16 protein_coding nonsense_mediated_decay MGP_AJ_T0046804.1 MGP_AJ_G0023465.1 mouse_genomes_project 17 31305876 31320436 + Cyp4f16 protein_coding processed_transcript MGP_AJ_T0046805.1 MGP_AJ_G0023465.1 mouse_genomes_project 17 31305882 31313436 + Cyp4f16 protein_coding retained_intron MGP_AJ_T0046806.1 MGP_AJ_G0023465.1 mouse_genomes_project 17 31305898 31322725 + MGP_AJ_P0046806 Cyp4f16 protein_coding nonsense_mediated_decay MGP_AJ_T0046808.1 MGP_AJ_G0023465.1 mouse_genomes_project 17 31318137 31320238 + Cyp4f16 protein_coding retained_intron MGP_AJ_T0046809.1 MGP_AJ_G0023465.1 mouse_genomes_project 17 31318458 31329686 + Cyp4f16 protein_coding retained_intron MGP_AJ_T0046810.1 MGP_AJ_G0023465.1 mouse_genomes_project 17 31322385 31330311 + Cyp4f16 protein_coding retained_intron MGP_AJ_T0048334.1 MGP_AJ_G0023914.1 mouse_genomes_project 17 57233677 57236061 + MGP_AJ_P0048334 Tnfsf9 protein_coding protein_coding MGP_AJ_T0047687.1 MGP_AJ_G0023683.1 mouse_genomes_project 17 36950663 36952201 + MGP_AJ_P0047687 Olfr122 protein_coding protein_coding MGP_AJ_T0045433.1 MGP_AJ_G0023084.1 mouse_genomes_project 17 3709215 3725574 + MGP_AJ_P0045433 protein_coding protein_coding MGP_AJ_T0006980.1 MGP_AJ_G0005737.1 mouse_genomes_project 17 70910259 70920422 - 5031415H12Rik lincRNA lincRNA MGP_AJ_T0048313.1 MGP_AJ_G0023905.1 mouse_genomes_project 17 57120779 57121341 - MGP_AJ_P0048313 Pspn protein_coding protein_coding MGP_AJ_T0045699.1 MGP_AJ_G0023174.1 mouse_genomes_project 17 18311192 18312089 + MGP_AJ_P0045699 Vmn1r224 protein_coding protein_coding MGP_AJ_T0047686.1 MGP_AJ_G0023682.1 mouse_genomes_project 17 36946689 36983951 + MGP_AJ_P0047686 protein_coding protein_coding MGP_AJ_T0047378.1 MGP_AJ_G0023589.1 mouse_genomes_project 17 34190261 34205959 - MGP_AJ_P0047378 Nfkbil1 protein_coding protein_coding MGP_AJ_T0047380.1 MGP_AJ_G0023589.1 mouse_genomes_project 17 34190921 34191743 - Nfkbil1 protein_coding processed_transcript MGP_AJ_T0047089.1 MGP_AJ_G0023531.1 mouse_genomes_project 17 33145695 33157600 + MGP_AJ_P0047089 H2-Eb1 protein_coding protein_coding MGP_AJ_T0047719.1 MGP_AJ_G0023709.1 mouse_genomes_project 17 40052294 40053886 - MGP_AJ_P0047719 Pgk2 protein_coding protein_coding MGP_AJ_T0047984.1 MGP_AJ_G0023794.1 mouse_genomes_project 17 46831782 46832972 - MGP_AJ_P0047984 A330017A19Rik protein_coding protein_coding MGP_AJ_T0048546.1 MGP_AJ_G0023983.1 mouse_genomes_project 17 74568539 74585775 - MGP_AJ_P0048546 Dpy30 protein_coding unknown_likely_coding MGP_AJ_T0010189.1 MGP_AJ_G0008311.1 mouse_genomes_project 17 25807169 25807231 + Mir7217 miRNA miRNA MGP_AJ_T0013249.1 MGP_AJ_G0011344.1 mouse_genomes_project 17 35844946 35845514 + processed_pseudogene processed_pseudogene MGP_AJ_T0046746.1 MGP_AJ_G0023452.1 mouse_genomes_project 17 30604544 30616169 - MGP_AJ_P0046746 Sik1 protein_coding protein_coding MGP_AJ_T0046018.1 MGP_AJ_G0023288.1 mouse_genomes_project 17 23248895 23254266 + MGP_AJ_P0046018 Spsb3 protein_coding protein_coding MGP_AJ_T0046019.1 MGP_AJ_G0023288.1 mouse_genomes_project 17 23248923 23252715 + MGP_AJ_P0046019 Spsb3 protein_coding nonsense_mediated_decay MGP_AJ_T0046020.1 MGP_AJ_G0023288.1 mouse_genomes_project 17 23248958 23254256 + MGP_AJ_P0046020 Spsb3 protein_coding protein_coding MGP_AJ_T0046021.1 MGP_AJ_G0023288.1 mouse_genomes_project 17 23248980 23254271 + Spsb3 protein_coding retained_intron MGP_AJ_T0046022.1 MGP_AJ_G0023288.1 mouse_genomes_project 17 23249370 23254268 + MGP_AJ_P0046022 Spsb3 protein_coding protein_coding MGP_AJ_T0046023.1 MGP_AJ_G0023288.1 mouse_genomes_project 17 23249995 23254269 + MGP_AJ_P0046023 Spsb3 protein_coding protein_coding MGP_AJ_T0046024.1 MGP_AJ_G0023288.1 mouse_genomes_project 17 23250067 23252559 + MGP_AJ_P0046024 Spsb3 protein_coding nonsense_mediated_decay MGP_AJ_T0102440.1 MGP_AJ_G0040182.1 mouse_genomes_project 17 36652305 36653026 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0013250.1 MGP_AJ_G0011345.1 mouse_genomes_project 17 36326176 36326843 + processed_pseudogene processed_pseudogene MGP_AJ_T0046952.1 MGP_AJ_G0023503.1 mouse_genomes_project 17 32698419 32702931 + MGP_AJ_P0046952 Tapbp protein_coding protein_coding MGP_AJ_T0046955.1 MGP_AJ_G0023503.1 mouse_genomes_project 17 32701847 32711814 + MGP_AJ_P0046955 Tapbp protein_coding protein_coding MGP_AJ_T0046956.1 MGP_AJ_G0023503.1 mouse_genomes_project 17 32702027 32702891 + Tapbp protein_coding retained_intron MGP_AJ_T0046957.1 MGP_AJ_G0023503.1 mouse_genomes_project 17 32703043 32708727 + Tapbp protein_coding processed_transcript MGP_AJ_T0046958.1 MGP_AJ_G0023503.1 mouse_genomes_project 17 32708647 32710803 + Tapbp protein_coding retained_intron MGP_AJ_T0045469.1 MGP_AJ_G0023099.1 mouse_genomes_project 17 5783022 5796859 + MGP_AJ_P0045469 Mpc1 protein_coding protein_coding MGP_AJ_T0045470.1 MGP_AJ_G0023099.1 mouse_genomes_project 17 5783912 5793601 + Mpc1 protein_coding retained_intron MGP_AJ_T0045471.1 MGP_AJ_G0023099.1 mouse_genomes_project 17 5783968 5797245 + MGP_AJ_P0045471 Mpc1 protein_coding protein_coding MGP_AJ_T0045472.1 MGP_AJ_G0023099.1 mouse_genomes_project 17 5784570 5797389 + MGP_AJ_P0045472 Mpc1 protein_coding protein_coding MGP_AJ_T0045473.1 MGP_AJ_G0023099.1 mouse_genomes_project 17 5796081 5797124 + Mpc1 protein_coding retained_intron MGP_AJ_T0045474.1 MGP_AJ_G0023099.1 mouse_genomes_project 17 5796343 5797389 + MGP_AJ_P0045474 Mpc1 protein_coding protein_coding MGP_AJ_T0045868.1 MGP_AJ_G0023249.1 mouse_genomes_project 17 22508676 22516609 - Amdhd2 protein_coding retained_intron MGP_AJ_T0045869.1 MGP_AJ_G0023249.1 mouse_genomes_project 17 22508676 22509583 - Amdhd2 protein_coding processed_transcript MGP_AJ_T0045870.1 MGP_AJ_G0023249.1 mouse_genomes_project 17 22508676 22516645 - MGP_AJ_P0045870 Amdhd2 protein_coding protein_coding MGP_AJ_T0045871.1 MGP_AJ_G0023249.1 mouse_genomes_project 17 22508678 22510436 - MGP_AJ_P0045871 Amdhd2 protein_coding protein_coding MGP_AJ_T0045872.1 MGP_AJ_G0023249.1 mouse_genomes_project 17 22511185 22516189 - MGP_AJ_P0045872 Amdhd2 protein_coding protein_coding MGP_AJ_T0045873.1 MGP_AJ_G0023249.1 mouse_genomes_project 17 22515090 22516572 - Amdhd2 protein_coding retained_intron MGP_AJ_T0048701.1 MGP_AJ_G0024044.1 mouse_genomes_project 17 85424472 85460985 + MGP_AJ_P0048701 Slc3a1 protein_coding protein_coding MGP_AJ_T0047317.1 MGP_AJ_G0023576.1 mouse_genomes_project 17 34062791 34065382 + Abhd16a protein_coding retained_intron MGP_AJ_T0047318.1 MGP_AJ_G0023576.1 mouse_genomes_project 17 34062819 34076426 + MGP_AJ_P0047318 Abhd16a protein_coding protein_coding MGP_AJ_T0047319.1 MGP_AJ_G0023576.1 mouse_genomes_project 17 34062842 34076395 + MGP_AJ_P0047319 Abhd16a protein_coding nonsense_mediated_decay MGP_AJ_T0047320.1 MGP_AJ_G0023576.1 mouse_genomes_project 17 34063398 34065522 + Abhd16a protein_coding retained_intron MGP_AJ_T0047321.1 MGP_AJ_G0023576.1 mouse_genomes_project 17 34069786 34074381 + Abhd16a protein_coding processed_transcript MGP_AJ_T0047322.1 MGP_AJ_G0023576.1 mouse_genomes_project 17 34073371 34074136 + Abhd16a protein_coding retained_intron MGP_AJ_T0047323.1 MGP_AJ_G0023576.1 mouse_genomes_project 17 34074294 34075469 + Abhd16a protein_coding retained_intron MGP_AJ_T0048446.1 MGP_AJ_G0023956.1 mouse_genomes_project 17 69605400 69657184 + MGP_AJ_P0048446 Akain1 protein_coding protein_coding MGP_AJ_T0047673.1 MGP_AJ_G0023672.1 mouse_genomes_project 17 36722825 36725526 - MGP_AJ_P0047673 H2-M2 protein_coding protein_coding MGP_AJ_T0047674.1 MGP_AJ_G0023672.1 mouse_genomes_project 17 36722957 36725527 - MGP_AJ_P0047674 H2-M2 protein_coding protein_coding MGP_AJ_T0045881.1 MGP_AJ_G0023252.1 mouse_genomes_project 17 22528017 22560926 - MGP_AJ_P0045881 Tbc1d24 protein_coding protein_coding MGP_AJ_T0045882.1 MGP_AJ_G0023252.1 mouse_genomes_project 17 22528018 22560953 - MGP_AJ_P0045882 Tbc1d24 protein_coding protein_coding MGP_AJ_T0045883.1 MGP_AJ_G0023252.1 mouse_genomes_project 17 22531680 22560906 - MGP_AJ_P0045883 Tbc1d24 protein_coding protein_coding MGP_AJ_T0045884.1 MGP_AJ_G0023252.1 mouse_genomes_project 17 22533314 22560910 - MGP_AJ_P0045884 Tbc1d24 protein_coding protein_coding MGP_AJ_T0045885.1 MGP_AJ_G0023252.1 mouse_genomes_project 17 22533487 22560905 - MGP_AJ_P0045885 Tbc1d24 protein_coding protein_coding MGP_AJ_T0045886.1 MGP_AJ_G0023252.1 mouse_genomes_project 17 22533533 22560922 - MGP_AJ_P0045886 Tbc1d24 protein_coding protein_coding MGP_AJ_T0045887.1 MGP_AJ_G0023252.1 mouse_genomes_project 17 22533544 22555333 - MGP_AJ_P0045887 Tbc1d24 protein_coding protein_coding MGP_AJ_T0045888.1 MGP_AJ_G0023252.1 mouse_genomes_project 17 22533594 22560887 - MGP_AJ_P0045888 Tbc1d24 protein_coding protein_coding MGP_AJ_T0045889.1 MGP_AJ_G0023252.1 mouse_genomes_project 17 22533594 22560914 - MGP_AJ_P0045889 Tbc1d24 protein_coding protein_coding MGP_AJ_T0045890.1 MGP_AJ_G0023252.1 mouse_genomes_project 17 22533613 22560905 - MGP_AJ_P0045890 Tbc1d24 protein_coding protein_coding MGP_AJ_T0045891.1 MGP_AJ_G0023252.1 mouse_genomes_project 17 22533614 22555333 - MGP_AJ_P0045891 Tbc1d24 protein_coding protein_coding MGP_AJ_T0045892.1 MGP_AJ_G0023252.1 mouse_genomes_project 17 22533760 22560916 - MGP_AJ_P0045892 Tbc1d24 protein_coding nonsense_mediated_decay MGP_AJ_T0045893.1 MGP_AJ_G0023252.1 mouse_genomes_project 17 22534964 22535788 - Tbc1d24 protein_coding processed_transcript MGP_AJ_T0045894.1 MGP_AJ_G0023252.1 mouse_genomes_project 17 22536162 22560873 - MGP_AJ_P0045894 Tbc1d24 protein_coding protein_coding MGP_AJ_T0045895.1 MGP_AJ_G0023252.1 mouse_genomes_project 17 22544995 22560910 - Tbc1d24 protein_coding processed_transcript MGP_AJ_T0045896.1 MGP_AJ_G0023252.1 mouse_genomes_project 17 22559238 22564781 - MGP_AJ_P0045896 Tbc1d24 protein_coding protein_coding MGP_AJ_T0013245.1 MGP_AJ_G0011340.1 mouse_genomes_project 17 35400288 35400558 - processed_pseudogene processed_pseudogene MGP_AJ_T0046511.1 MGP_AJ_G0023397.1 mouse_genomes_project 17 26813198 26832013 - MGP_AJ_P0046511 Tead3 protein_coding protein_coding MGP_AJ_T0046512.1 MGP_AJ_G0023397.1 mouse_genomes_project 17 26813241 26832076 - Tead3 protein_coding retained_intron MGP_AJ_T0046513.1 MGP_AJ_G0023397.1 mouse_genomes_project 17 26814261 26824877 - MGP_AJ_P0046513 Tead3 protein_coding protein_coding MGP_AJ_T0046514.1 MGP_AJ_G0023397.1 mouse_genomes_project 17 26815047 26816931 - Tead3 protein_coding retained_intron MGP_AJ_T0046515.1 MGP_AJ_G0023397.1 mouse_genomes_project 17 26815464 26817860 - Tead3 protein_coding processed_transcript MGP_AJ_T0010188.1 MGP_AJ_G0008310.1 mouse_genomes_project 17 25771648 25771724 + Mir7216 miRNA miRNA MGP_AJ_T0010201.1 MGP_AJ_G0008323.1 mouse_genomes_project 17 33815311 33815378 - Mir6970 miRNA miRNA MGP_AJ_T0048639.1 MGP_AJ_G0024016.1 mouse_genomes_project 17 80578717 80581091 + Gemin6 protein_coding processed_transcript MGP_AJ_T0048640.1 MGP_AJ_G0024016.1 mouse_genomes_project 17 80578717 80582792 + MGP_AJ_P0048640 Gemin6 protein_coding protein_coding MGP_AJ_T0045504.1 MGP_AJ_G0023107.1 mouse_genomes_project 17 7164544 7167752 - MGP_AJ_P0045504 Pabpc6 protein_coding protein_coding MGP_AJ_T0047359.1 MGP_AJ_G0023584.1 mouse_genomes_project 17 34121773 34137212 - MGP_AJ_P0047359 Prrc2a protein_coding protein_coding MGP_AJ_T0047360.1 MGP_AJ_G0023584.1 mouse_genomes_project 17 34121786 34135284 - MGP_AJ_P0047360 Prrc2a protein_coding protein_coding MGP_AJ_T0047361.1 MGP_AJ_G0023584.1 mouse_genomes_project 17 34121875 34123064 - Prrc2a protein_coding retained_intron MGP_AJ_T0047362.1 MGP_AJ_G0023584.1 mouse_genomes_project 17 34123030 34123650 - Prrc2a protein_coding retained_intron MGP_AJ_T0047363.1 MGP_AJ_G0023584.1 mouse_genomes_project 17 34124514 34125576 - Prrc2a protein_coding retained_intron MGP_AJ_T0047364.1 MGP_AJ_G0023584.1 mouse_genomes_project 17 34129447 34137150 - Prrc2a protein_coding processed_transcript MGP_AJ_T0046218.1 MGP_AJ_G0023335.1 mouse_genomes_project 17 24211357 24217752 - MGP_AJ_P0046218 Rhot2 protein_coding protein_coding MGP_AJ_T0046219.1 MGP_AJ_G0023335.1 mouse_genomes_project 17 24211738 24214049 - Rhot2 protein_coding retained_intron MGP_AJ_T0046220.1 MGP_AJ_G0023335.1 mouse_genomes_project 17 24211740 24217364 - Rhot2 protein_coding retained_intron MGP_AJ_T0046221.1 MGP_AJ_G0023335.1 mouse_genomes_project 17 24212174 24213500 - Rhot2 protein_coding retained_intron MGP_AJ_T0046222.1 MGP_AJ_G0023335.1 mouse_genomes_project 17 24212954 24214563 - Rhot2 protein_coding processed_transcript MGP_AJ_T0046223.1 MGP_AJ_G0023335.1 mouse_genomes_project 17 24214156 24214955 - Rhot2 protein_coding retained_intron MGP_AJ_T0046224.1 MGP_AJ_G0023335.1 mouse_genomes_project 17 24214237 24216038 - Rhot2 protein_coding retained_intron MGP_AJ_T0046225.1 MGP_AJ_G0023335.1 mouse_genomes_project 17 24214286 24215007 - Rhot2 protein_coding retained_intron MGP_AJ_T0046226.1 MGP_AJ_G0023335.1 mouse_genomes_project 17 24214460 24217207 - Rhot2 protein_coding retained_intron MGP_AJ_T0046227.1 MGP_AJ_G0023335.1 mouse_genomes_project 17 24214468 24216044 - Rhot2 protein_coding retained_intron MGP_AJ_T0046228.1 MGP_AJ_G0023335.1 mouse_genomes_project 17 24214505 24217219 - Rhot2 protein_coding retained_intron MGP_AJ_T0046229.1 MGP_AJ_G0023335.1 mouse_genomes_project 17 24214660 24217318 - MGP_AJ_P0046229 Rhot2 protein_coding protein_coding MGP_AJ_T0046230.1 MGP_AJ_G0023335.1 mouse_genomes_project 17 24214996 24217347 - Rhot2 protein_coding retained_intron MGP_AJ_T0046231.1 MGP_AJ_G0023335.1 mouse_genomes_project 17 24215152 24217426 - MGP_AJ_P0046231 Rhot2 protein_coding protein_coding MGP_AJ_T0046232.1 MGP_AJ_G0023335.1 mouse_genomes_project 17 24215156 24217470 - Rhot2 protein_coding processed_transcript MGP_AJ_T0046233.1 MGP_AJ_G0023335.1 mouse_genomes_project 17 24215282 24217443 - Rhot2 protein_coding processed_transcript MGP_AJ_T0046234.1 MGP_AJ_G0023335.1 mouse_genomes_project 17 24216675 24217431 - Rhot2 protein_coding retained_intron MGP_AJ_T0102399.1 MGP_AJ_G0040141.1 mouse_genomes_project 17 32745920 35208829 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0013254.1 MGP_AJ_G0011349.1 mouse_genomes_project 17 37106363 37107300 + processed_pseudogene processed_pseudogene MGP_AJ_T0048709.1 MGP_AJ_G0024049.1 mouse_genomes_project 17 86410572 86572144 - MGP_AJ_P0048709 Srbd1 protein_coding protein_coding MGP_AJ_T0102385.1 MGP_AJ_G0040127.1 mouse_genomes_project 17 18324706 18325310 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0047396.1 MGP_AJ_G0023595.1 mouse_genomes_project 17 34577033 34581561 + MGP_AJ_P0047396 Pou5f1 protein_coding protein_coding MGP_AJ_T0047397.1 MGP_AJ_G0023595.1 mouse_genomes_project 17 34578500 34580932 + MGP_AJ_P0047397 Pou5f1 protein_coding protein_coding MGP_AJ_T0047398.1 MGP_AJ_G0023595.1 mouse_genomes_project 17 34579603 34580932 + MGP_AJ_P0047398 Pou5f1 protein_coding protein_coding MGP_AJ_T0047399.1 MGP_AJ_G0023595.1 mouse_genomes_project 17 34579605 34580932 + MGP_AJ_P0047399 Pou5f1 protein_coding protein_coding MGP_AJ_T0047400.1 MGP_AJ_G0023595.1 mouse_genomes_project 17 34579615 34580932 + MGP_AJ_P0047400 Pou5f1 protein_coding protein_coding MGP_AJ_T0047401.1 MGP_AJ_G0023595.1 mouse_genomes_project 17 34579619 34580932 + MGP_AJ_P0047401 Pou5f1 protein_coding protein_coding MGP_AJ_T0010213.1 MGP_AJ_G0008335.1 mouse_genomes_project 17 49093630 49093775 - Gm44304 miRNA miRNA MGP_AJ_T0047692.1 MGP_AJ_G0023688.1 mouse_genomes_project 17 37099703 37100941 + MGP_AJ_P0047692 protein_coding protein_coding MGP_AJ_T0046549.1 MGP_AJ_G0023406.1 mouse_genomes_project 17 27193055 27250499 + MGP_AJ_P0046549 Mapk14 protein_coding protein_coding MGP_AJ_T0046550.1 MGP_AJ_G0023406.1 mouse_genomes_project 17 27193055 27243260 + MGP_AJ_P0046550 Mapk14 protein_coding protein_coding MGP_AJ_T0046551.1 MGP_AJ_G0023406.1 mouse_genomes_project 17 27193055 27250499 + MGP_AJ_P0046551 Mapk14 protein_coding protein_coding MGP_AJ_T0046552.1 MGP_AJ_G0023406.1 mouse_genomes_project 17 27193153 27229741 + MGP_AJ_P0046552 Mapk14 protein_coding protein_coding MGP_AJ_T0046553.1 MGP_AJ_G0023406.1 mouse_genomes_project 17 27193200 27250504 + MGP_AJ_P0046553 Mapk14 protein_coding protein_coding MGP_AJ_T0046554.1 MGP_AJ_G0023406.1 mouse_genomes_project 17 27243714 27248452 + Mapk14 protein_coding retained_intron MGP_AJ_T0102398.1 MGP_AJ_G0040140.1 mouse_genomes_project 17 32687762 32688152 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0102421.1 MGP_AJ_G0040163.1 mouse_genomes_project 17 35726814 35727035 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0011422.1 MGP_AJ_G0009544.1 mouse_genomes_project 17 30794145 30794416 + Gm25883 misc_RNA misc_RNA MGP_AJ_T0102428.1 MGP_AJ_G0040170.1 mouse_genomes_project 17 35902350 35902678 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0047838.1 MGP_AJ_G0023754.1 mouse_genomes_project 17 45537163 45562958 - MGP_AJ_P0047838 Capn11 protein_coding protein_coding MGP_AJ_T0047839.1 MGP_AJ_G0023754.1 mouse_genomes_project 17 45550485 45562930 - MGP_AJ_P0047839 Capn11 protein_coding non_stop_decay MGP_AJ_T0048305.1 MGP_AJ_G0023900.1 mouse_genomes_project 17 56993715 57007098 + MGP_AJ_P0048305 1700061G19Rik protein_coding protein_coding MGP_AJ_T0048306.1 MGP_AJ_G0023900.1 mouse_genomes_project 17 56993741 56996057 + 1700061G19Rik protein_coding retained_intron MGP_AJ_T0048720.1 MGP_AJ_G0024055.1 mouse_genomes_project 17 87407012 87443871 + MGP_AJ_P0048720 Rhoq protein_coding protein_coding MGP_AJ_T0048721.1 MGP_AJ_G0024055.1 mouse_genomes_project 17 87407222 87438900 + MGP_AJ_P0048721 Rhoq protein_coding protein_coding MGP_AJ_T0047853.1 MGP_AJ_G0023757.1 mouse_genomes_project 17 45639567 45640548 - MGP_AJ_P0047853 1600014C23Rik protein_coding protein_coding MGP_AJ_T0045807.1 MGP_AJ_G0023226.1 mouse_genomes_project 17 21963618 21984395 - protein_coding retained_intron MGP_AJ_T0045808.1 MGP_AJ_G0023226.1 mouse_genomes_project 17 21963618 21984395 - MGP_AJ_P0045808 protein_coding protein_coding MGP_AJ_T0045809.1 MGP_AJ_G0023226.1 mouse_genomes_project 17 21963618 21982329 - MGP_AJ_P0045809 protein_coding protein_coding MGP_AJ_T0045810.1 MGP_AJ_G0023226.1 mouse_genomes_project 17 21964183 21983552 - protein_coding retained_intron MGP_AJ_T0045811.1 MGP_AJ_G0023226.1 mouse_genomes_project 17 21964183 21965465 - protein_coding retained_intron MGP_AJ_T0046516.1 MGP_AJ_G0023398.1 mouse_genomes_project 17 26832927 26836479 - Tulp1 protein_coding retained_intron MGP_AJ_T0046517.1 MGP_AJ_G0023398.1 mouse_genomes_project 17 26832927 26846996 - MGP_AJ_P0046517 Tulp1 protein_coding protein_coding MGP_AJ_T0046518.1 MGP_AJ_G0023398.1 mouse_genomes_project 17 26832928 26840633 - MGP_AJ_P0046518 Tulp1 protein_coding protein_coding MGP_AJ_T0046519.1 MGP_AJ_G0023398.1 mouse_genomes_project 17 26833266 26840601 - MGP_AJ_P0046519 Tulp1 protein_coding nonsense_mediated_decay MGP_AJ_T0046520.1 MGP_AJ_G0023398.1 mouse_genomes_project 17 26833942 26844768 - Tulp1 protein_coding retained_intron MGP_AJ_T0046521.1 MGP_AJ_G0023398.1 mouse_genomes_project 17 26833950 26838373 - Tulp1 protein_coding retained_intron MGP_AJ_T0046522.1 MGP_AJ_G0023398.1 mouse_genomes_project 17 26834474 26841060 - MGP_AJ_P0046522 Tulp1 protein_coding protein_coding MGP_AJ_T0046523.1 MGP_AJ_G0023398.1 mouse_genomes_project 17 26837813 26847030 - MGP_AJ_P0046523 Tulp1 protein_coding protein_coding MGP_AJ_T0046524.1 MGP_AJ_G0023398.1 mouse_genomes_project 17 26840388 26844280 - Tulp1 protein_coding retained_intron MGP_AJ_T0046525.1 MGP_AJ_G0023398.1 mouse_genomes_project 17 26843480 26844805 - Tulp1 protein_coding retained_intron MGP_AJ_T0046526.1 MGP_AJ_G0023398.1 mouse_genomes_project 17 26844542 26846994 - Tulp1 protein_coding retained_intron MGP_AJ_T0046527.1 MGP_AJ_G0023398.1 mouse_genomes_project 17 26845533 26846987 - Tulp1 protein_coding retained_intron MGP_AJ_T0006978.1 MGP_AJ_G0005736.1 mouse_genomes_project 17 69583801 69588032 + C030034I22Rik lincRNA lincRNA MGP_AJ_T0006979.1 MGP_AJ_G0005736.1 mouse_genomes_project 17 69583860 69585331 + C030034I22Rik lincRNA lincRNA MGP_AJ_T0045542.1 MGP_AJ_G0023119.1 mouse_genomes_project 17 10373985 10375794 + MGP_AJ_P0045542 Mrgprh protein_coding protein_coding MGP_AJ_T0046375.1 MGP_AJ_G0023366.1 mouse_genomes_project 17 25242879 25245779 - MGP_AJ_P0046375 Nkx2-5 protein_coding protein_coding MGP_AJ_T0003753.1 MGP_AJ_G0003373.1 mouse_genomes_project 17 33951520 33956410 - Gm10501 antisense antisense MGP_AJ_T0045800.1 MGP_AJ_G0023222.1 mouse_genomes_project 17 21939225 21940857 + MGP_AJ_P0045800 Hcfc1r1 protein_coding protein_coding MGP_AJ_T0045801.1 MGP_AJ_G0023222.1 mouse_genomes_project 17 21939237 21940857 + MGP_AJ_P0045801 Hcfc1r1 protein_coding protein_coding MGP_AJ_T0045802.1 MGP_AJ_G0023222.1 mouse_genomes_project 17 21939256 21940804 + MGP_AJ_P0045802 Hcfc1r1 protein_coding protein_coding MGP_AJ_T0048679.1 MGP_AJ_G0024035.1 mouse_genomes_project 17 84208373 84225034 - MGP_AJ_P0048679 Haao protein_coding protein_coding MGP_AJ_T0048146.1 MGP_AJ_G0023838.1 mouse_genomes_project 17 49450368 49563174 - MGP_AJ_P0048146 Daam2 protein_coding protein_coding MGP_AJ_T0048147.1 MGP_AJ_G0023838.1 mouse_genomes_project 17 49470014 49563160 - MGP_AJ_P0048147 Daam2 protein_coding unknown_likely_coding MGP_AJ_T0013222.1 MGP_AJ_G0011317.1 mouse_genomes_project 17 22370043 22370551 + processed_pseudogene processed_pseudogene MGP_AJ_T0100936.1 MGP_AJ_G0038902.1 mouse_genomes_project 17 74264267 74264410 + Gm24475 snoRNA snoRNA MGP_AJ_T0048431.1 MGP_AJ_G0023949.1 mouse_genomes_project 17 67794294 67796053 - MGP_AJ_P0048431 Lrrc30 protein_coding protein_coding MGP_AJ_T0010205.1 MGP_AJ_G0008327.1 mouse_genomes_project 17 34214219 34214280 + Mir6975 miRNA miRNA MGP_AJ_T0017574.1 MGP_AJ_G0015327.1 mouse_genomes_project 17 47079611 47268890 + Trerf1 processed_transcript retained_intron MGP_AJ_T0017575.1 MGP_AJ_G0015327.1 mouse_genomes_project 17 47079671 47301390 + Trerf1 processed_transcript processed_transcript MGP_AJ_T0017576.1 MGP_AJ_G0015327.1 mouse_genomes_project 17 47079671 47298806 + Trerf1 processed_transcript processed_transcript MGP_AJ_T0017577.1 MGP_AJ_G0015327.1 mouse_genomes_project 17 47079945 47258166 + Trerf1 processed_transcript retained_intron MGP_AJ_T0017578.1 MGP_AJ_G0015327.1 mouse_genomes_project 17 47151938 47258166 + Trerf1 processed_transcript retained_intron MGP_AJ_T0017579.1 MGP_AJ_G0015327.1 mouse_genomes_project 17 47233457 47298811 + Trerf1 processed_transcript processed_transcript MGP_AJ_T0099678.1 MGP_AJ_G0037644.1 mouse_genomes_project 17 94837389 94837498 - Gm22593 snRNA snRNA MGP_AJ_T0010202.1 MGP_AJ_G0008324.1 mouse_genomes_project 17 33827776 33827840 - Mir6972 miRNA miRNA MGP_AJ_T0048193.1 MGP_AJ_G0023853.1 mouse_genomes_project 17 54346122 54372157 - MGP_AJ_P0048193 Slc5a7 protein_coding protein_coding MGP_AJ_T0100930.1 MGP_AJ_G0038896.1 mouse_genomes_project 17 63317742 63317859 + Gm24730 snoRNA snoRNA MGP_AJ_T0047250.1 MGP_AJ_G0023561.1 mouse_genomes_project 17 33905438 33910107 + MGP_AJ_P0047250 Neu1 protein_coding protein_coding MGP_AJ_T0047251.1 MGP_AJ_G0023561.1 mouse_genomes_project 17 33905499 33910139 + Neu1 protein_coding retained_intron MGP_AJ_T0047252.1 MGP_AJ_G0023561.1 mouse_genomes_project 17 33906048 33906951 + Neu1 protein_coding retained_intron MGP_AJ_T0011437.1 MGP_AJ_G0009559.1 mouse_genomes_project 17 86021612 86021838 + Gm27801 misc_RNA misc_RNA MGP_AJ_T0046062.1 MGP_AJ_G0023293.1 mouse_genomes_project 17 23309220 23327534 - MGP_AJ_P0046062 Hn1l protein_coding protein_coding MGP_AJ_T0045702.1 MGP_AJ_G0023177.1 mouse_genomes_project 17 18477609 18478730 + MGP_AJ_P0045702 Gm5145 protein_coding protein_coding MGP_AJ_T0048369.1 MGP_AJ_G0023931.1 mouse_genomes_project 17 64399141 64449893 - MGP_AJ_P0048369 Pja2 protein_coding protein_coding MGP_AJ_T0048370.1 MGP_AJ_G0023931.1 mouse_genomes_project 17 64399142 64431012 - MGP_AJ_P0048370 Pja2 protein_coding protein_coding MGP_AJ_T0048371.1 MGP_AJ_G0023931.1 mouse_genomes_project 17 64399142 64431012 - MGP_AJ_P0048371 Pja2 protein_coding protein_coding MGP_AJ_T0048372.1 MGP_AJ_G0023931.1 mouse_genomes_project 17 64399156 64449842 - MGP_AJ_P0048372 Pja2 protein_coding protein_coding MGP_AJ_T0010173.1 MGP_AJ_G0008295.1 mouse_genomes_project 17 22094407 22094486 + Mir5125 miRNA miRNA MGP_AJ_T0003768.1 MGP_AJ_G0003385.1 mouse_genomes_project 17 44471928 44473109 + Runx2os3 antisense antisense MGP_AJ_T0102383.1 MGP_AJ_G0040125.1 mouse_genomes_project 17 18297061 18297812 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0011813.1 MGP_AJ_G0009924.1 mouse_genomes_project 17 35165761 35172808 - polymorphic_pseudogene retained_intron MGP_AJ_T0047082.1 MGP_AJ_G0023529.1 mouse_genomes_project 17 33095005 33103871 + MGP_AJ_P0047082 H2-Ab1 protein_coding protein_coding MGP_AJ_T0047083.1 MGP_AJ_G0023529.1 mouse_genomes_project 17 33101617 33102550 + H2-Ab1 protein_coding retained_intron MGP_AJ_T0047084.1 MGP_AJ_G0023529.1 mouse_genomes_project 17 33102732 33103847 + H2-Ab1 protein_coding retained_intron MGP_AJ_T0013205.1 MGP_AJ_G0011300.1 mouse_genomes_project 17 2902699 2903183 + processed_pseudogene processed_pseudogene MGP_AJ_T0013295.1 MGP_AJ_G0011390.1 mouse_genomes_project 17 81320205 81320536 - processed_pseudogene processed_pseudogene MGP_AJ_T0045459.1 MGP_AJ_G0023097.1 mouse_genomes_project 17 5667555 5699606 + MGP_AJ_P0045459 Fgfr1op protein_coding protein_coding MGP_AJ_T0045460.1 MGP_AJ_G0023097.1 mouse_genomes_project 17 5667574 5678255 + Fgfr1op protein_coding retained_intron MGP_AJ_T0045461.1 MGP_AJ_G0023097.1 mouse_genomes_project 17 5667594 5699277 + MGP_AJ_P0045461 Fgfr1op protein_coding protein_coding MGP_AJ_T0045462.1 MGP_AJ_G0023097.1 mouse_genomes_project 17 5684401 5697747 + MGP_AJ_P0045462 Fgfr1op protein_coding protein_coding MGP_AJ_T0013248.1 MGP_AJ_G0011343.1 mouse_genomes_project 17 35634854 35635847 - processed_pseudogene processed_pseudogene MGP_AJ_T0045692.1 MGP_AJ_G0023167.1 mouse_genomes_project 17 17650869 17688584 + MGP_AJ_P0045692 Vmn2r103 protein_coding protein_coding MGP_AJ_T0006981.1 MGP_AJ_G0005738.1 mouse_genomes_project 17 71055834 71057827 - Gm26510 lincRNA lincRNA MGP_AJ_T0006982.1 MGP_AJ_G0005738.1 mouse_genomes_project 17 71055837 71107781 - Gm26510 lincRNA lincRNA MGP_AJ_T0048812.1 MGP_AJ_G0024077.1 mouse_genomes_project 17 93726800 93732871 + MGP_AJ_P0048812 Adcyap1 protein_coding protein_coding MGP_AJ_T0048773.1 MGP_AJ_G0024071.1 mouse_genomes_project 17 89122625 89156353 + MGP_AJ_P0048773 Ston1 protein_coding protein_coding MGP_AJ_T0048774.1 MGP_AJ_G0024071.1 mouse_genomes_project 17 89122637 89167731 + Ston1 protein_coding processed_transcript MGP_AJ_T0048775.1 MGP_AJ_G0024071.1 mouse_genomes_project 17 89147092 89171669 + MGP_AJ_P0048775 Ston1 protein_coding protein_coding MGP_AJ_T0048776.1 MGP_AJ_G0024071.1 mouse_genomes_project 17 89147092 89168133 + MGP_AJ_P0048776 Ston1 protein_coding protein_coding MGP_AJ_T0048777.1 MGP_AJ_G0024071.1 mouse_genomes_project 17 89147146 89186323 + MGP_AJ_P0048777 Ston1 protein_coding protein_coding MGP_AJ_T0048778.1 MGP_AJ_G0024071.1 mouse_genomes_project 17 89147370 89157922 + Ston1 protein_coding retained_intron MGP_AJ_T0048779.1 MGP_AJ_G0024071.1 mouse_genomes_project 17 89147901 89157922 + Ston1 protein_coding retained_intron MGP_AJ_T0048003.1 MGP_AJ_G0023801.1 mouse_genomes_project 17 47335043 47341050 - MGP_AJ_P0048003 Guca1a protein_coding protein_coding MGP_AJ_T0047022.1 MGP_AJ_G0023518.1 mouse_genomes_project 17 32823939 32830684 + MGP_AJ_P0047022 Rxrb protein_coding protein_coding MGP_AJ_T0047023.1 MGP_AJ_G0023518.1 mouse_genomes_project 17 32824310 32829991 + MGP_AJ_P0047023 Rxrb protein_coding protein_coding MGP_AJ_T0047024.1 MGP_AJ_G0023518.1 mouse_genomes_project 17 32824323 32826333 + MGP_AJ_P0047024 Rxrb protein_coding protein_coding MGP_AJ_T0047025.1 MGP_AJ_G0023518.1 mouse_genomes_project 17 32824502 32830106 + MGP_AJ_P0047025 Rxrb protein_coding protein_coding MGP_AJ_T0047026.1 MGP_AJ_G0023518.1 mouse_genomes_project 17 32824528 32830684 + MGP_AJ_P0047026 Rxrb protein_coding protein_coding MGP_AJ_T0047027.1 MGP_AJ_G0023518.1 mouse_genomes_project 17 32825680 32828301 + Rxrb protein_coding retained_intron MGP_AJ_T0047028.1 MGP_AJ_G0023518.1 mouse_genomes_project 17 32826038 32828664 + Rxrb protein_coding retained_intron MGP_AJ_T0047029.1 MGP_AJ_G0023518.1 mouse_genomes_project 17 32828613 32829565 + Rxrb protein_coding retained_intron MGP_AJ_T0047030.1 MGP_AJ_G0023518.1 mouse_genomes_project 17 32828657 32829598 + Rxrb protein_coding retained_intron MGP_AJ_T0047031.1 MGP_AJ_G0023518.1 mouse_genomes_project 17 32828753 32829825 + Rxrb protein_coding retained_intron MGP_AJ_T0048106.1 MGP_AJ_G0023829.1 mouse_genomes_project 17 48324506 48330378 + MGP_AJ_P0048106 Trem2 protein_coding protein_coding MGP_AJ_T0048107.1 MGP_AJ_G0023829.1 mouse_genomes_project 17 48324545 48332252 + Trem2 protein_coding retained_intron MGP_AJ_T0048108.1 MGP_AJ_G0023829.1 mouse_genomes_project 17 48324593 48330378 + MGP_AJ_P0048108 Trem2 protein_coding protein_coding MGP_AJ_T0048109.1 MGP_AJ_G0023829.1 mouse_genomes_project 17 48324594 48328663 + Trem2 protein_coding processed_transcript MGP_AJ_T0046747.1 MGP_AJ_G0023453.1 mouse_genomes_project 17 30707980 30800696 - MGP_AJ_P0046747 Hsf2bp protein_coding protein_coding MGP_AJ_T0046748.1 MGP_AJ_G0023453.1 mouse_genomes_project 17 30776793 30789407 - Hsf2bp protein_coding processed_transcript MGP_AJ_T0046408.1 MGP_AJ_G0023377.1 mouse_genomes_project 17 25878405 25959704 - MGP_AJ_P0046408 Grm4 protein_coding protein_coding MGP_AJ_T0046409.1 MGP_AJ_G0023377.1 mouse_genomes_project 17 25881922 25969754 - MGP_AJ_P0046409 Grm4 protein_coding protein_coding MGP_AJ_T0046410.1 MGP_AJ_G0023377.1 mouse_genomes_project 17 25908373 25930048 - Grm4 protein_coding retained_intron MGP_AJ_T0046411.1 MGP_AJ_G0023377.1 mouse_genomes_project 17 25909845 25929799 - Grm4 protein_coding processed_transcript MGP_AJ_T0046640.1 MGP_AJ_G0023426.1 mouse_genomes_project 17 28119533 28177688 + MGP_AJ_P0046640 Tbc1d22b protein_coding protein_coding MGP_AJ_T0046641.1 MGP_AJ_G0023426.1 mouse_genomes_project 17 28142980 28177687 + Tbc1d22b protein_coding retained_intron MGP_AJ_T0046559.1 MGP_AJ_G0023408.1 mouse_genomes_project 17 27303343 27341636 + MGP_AJ_P0046559 Brpf3 protein_coding protein_coding MGP_AJ_T0046560.1 MGP_AJ_G0023408.1 mouse_genomes_project 17 27304028 27308554 + Brpf3 protein_coding processed_transcript MGP_AJ_T0046561.1 MGP_AJ_G0023408.1 mouse_genomes_project 17 27312897 27319972 + Brpf3 protein_coding processed_transcript MGP_AJ_T0046562.1 MGP_AJ_G0023408.1 mouse_genomes_project 17 27313789 27341583 + Brpf3 protein_coding retained_intron MGP_AJ_T0046563.1 MGP_AJ_G0023408.1 mouse_genomes_project 17 27317252 27320350 + Brpf3 protein_coding retained_intron MGP_AJ_T0046564.1 MGP_AJ_G0023408.1 mouse_genomes_project 17 27317405 27320588 + Brpf3 protein_coding processed_transcript MGP_AJ_T0046565.1 MGP_AJ_G0023408.1 mouse_genomes_project 17 27325705 27339767 + Brpf3 protein_coding processed_transcript MGP_AJ_T0046566.1 MGP_AJ_G0023408.1 mouse_genomes_project 17 27326660 27339805 + Brpf3 protein_coding processed_transcript MGP_AJ_T0046567.1 MGP_AJ_G0023408.1 mouse_genomes_project 17 27326740 27341631 + Brpf3 protein_coding processed_transcript MGP_AJ_T0046568.1 MGP_AJ_G0023408.1 mouse_genomes_project 17 27331148 27339860 + Brpf3 protein_coding processed_transcript MGP_AJ_T0013216.1 MGP_AJ_G0011311.1 mouse_genomes_project 17 12588252 12588991 + processed_pseudogene processed_pseudogene MGP_AJ_T0047557.1 MGP_AJ_G0023626.1 mouse_genomes_project 17 35216089 35218268 - MGP_AJ_P0047557 protein_coding nonsense_mediated_decay MGP_AJ_T0047558.1 MGP_AJ_G0023626.1 mouse_genomes_project 17 35216089 35218253 - MGP_AJ_P0047558 protein_coding nonsense_mediated_decay MGP_AJ_T0045821.1 MGP_AJ_G0023232.1 mouse_genomes_project 17 22053438 22071919 + MGP_AJ_P0045821 Srrm2 protein_coding protein_coding MGP_AJ_T0045822.1 MGP_AJ_G0023232.1 mouse_genomes_project 17 22066590 22095782 + MGP_AJ_P0045822 Srrm2 protein_coding protein_coding MGP_AJ_T0045823.1 MGP_AJ_G0023232.1 mouse_genomes_project 17 22066624 22095787 + MGP_AJ_P0045823 Srrm2 protein_coding protein_coding MGP_AJ_T0045824.1 MGP_AJ_G0023232.1 mouse_genomes_project 17 22071320 22080849 + MGP_AJ_P0045824 Srrm2 protein_coding protein_coding MGP_AJ_T0045825.1 MGP_AJ_G0023232.1 mouse_genomes_project 17 22071500 22072111 + Srrm2 protein_coding retained_intron MGP_AJ_T0045826.1 MGP_AJ_G0023232.1 mouse_genomes_project 17 22082750 22083678 + MGP_AJ_P0045826 Srrm2 protein_coding nonsense_mediated_decay MGP_AJ_T0045827.1 MGP_AJ_G0023232.1 mouse_genomes_project 17 22082978 22087609 + Srrm2 protein_coding retained_intron MGP_AJ_T0045828.1 MGP_AJ_G0023232.1 mouse_genomes_project 17 22090424 22093645 + Srrm2 protein_coding processed_transcript MGP_AJ_T0045829.1 MGP_AJ_G0023232.1 mouse_genomes_project 17 22092503 22093777 + MGP_AJ_P0045829 Srrm2 protein_coding nonsense_mediated_decay MGP_AJ_T0045830.1 MGP_AJ_G0023232.1 mouse_genomes_project 17 22094637 22095414 + Srrm2 protein_coding retained_intron MGP_AJ_T0046599.1 MGP_AJ_G0023415.1 mouse_genomes_project 17 27607640 27616072 + MGP_AJ_P0046599 Cdkn1a protein_coding protein_coding MGP_AJ_T0046600.1 MGP_AJ_G0023415.1 mouse_genomes_project 17 27610426 27617267 + MGP_AJ_P0046600 Cdkn1a protein_coding protein_coding MGP_AJ_T0046601.1 MGP_AJ_G0023415.1 mouse_genomes_project 17 27614767 27616114 + MGP_AJ_P0046601 Cdkn1a protein_coding protein_coding MGP_AJ_T0047689.1 MGP_AJ_G0023685.1 mouse_genomes_project 17 37046682 37047623 + MGP_AJ_P0047689 Olfr123 protein_coding protein_coding MGP_AJ_T0047660.1 MGP_AJ_G0023660.1 mouse_genomes_project 17 36442660 36443634 - MGP_AJ_P0047660 Olfr95 protein_coding protein_coding MGP_AJ_T0046011.1 MGP_AJ_G0023285.1 mouse_genomes_project 17 23212904 23216429 + MGP_AJ_P0046011 Hagh protein_coding protein_coding MGP_AJ_T0046012.1 MGP_AJ_G0023285.1 mouse_genomes_project 17 23212907 23226492 + MGP_AJ_P0046012 Hagh protein_coding protein_coding MGP_AJ_T0046013.1 MGP_AJ_G0023285.1 mouse_genomes_project 17 23212921 23226495 + MGP_AJ_P0046013 Hagh protein_coding protein_coding MGP_AJ_T0046014.1 MGP_AJ_G0023285.1 mouse_genomes_project 17 23212995 23223282 + MGP_AJ_P0046014 Hagh protein_coding protein_coding MGP_AJ_T0046015.1 MGP_AJ_G0023285.1 mouse_genomes_project 17 23220463 23226649 + Hagh protein_coding processed_transcript MGP_AJ_T0102419.1 MGP_AJ_G0040161.1 mouse_genomes_project 17 35687650 35689428 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0017542.1 MGP_AJ_G0015312.1 mouse_genomes_project 17 11256823 11267570 - Gm16046 processed_transcript processed_transcript MGP_AJ_T0017543.1 MGP_AJ_G0015312.1 mouse_genomes_project 17 11260294 11267560 - Gm16046 processed_transcript processed_transcript MGP_AJ_T0017544.1 MGP_AJ_G0015312.1 mouse_genomes_project 17 11260768 11267589 - Gm16046 processed_transcript processed_transcript MGP_AJ_T0013261.1 MGP_AJ_G0011356.1 mouse_genomes_project 17 37700149 37700279 - processed_pseudogene processed_pseudogene MGP_AJ_T0047586.1 MGP_AJ_G0023639.1 mouse_genomes_project 17 35988657 35992051 + MGP_AJ_P0047586 H2-M10.6 protein_coding protein_coding MGP_AJ_T0046395.1 MGP_AJ_G0023372.1 mouse_genomes_project 17 25450704 25459868 - MGP_AJ_P0046395 Bak1 protein_coding protein_coding MGP_AJ_T0046396.1 MGP_AJ_G0023372.1 mouse_genomes_project 17 25450706 25459437 - MGP_AJ_P0046396 Bak1 protein_coding nonsense_mediated_decay MGP_AJ_T0046397.1 MGP_AJ_G0023372.1 mouse_genomes_project 17 25451560 25453674 - MGP_AJ_P0046397 Bak1 protein_coding protein_coding MGP_AJ_T0046398.1 MGP_AJ_G0023372.1 mouse_genomes_project 17 25453463 25459446 - Bak1 protein_coding processed_transcript MGP_AJ_T0003761.1 MGP_AJ_G0003381.1 mouse_genomes_project 17 35161304 35166997 + antisense antisense MGP_AJ_T0047762.1 MGP_AJ_G0023735.1 mouse_genomes_project 17 43510776 43525725 - MGP_AJ_P0047762 Tdrd6 protein_coding protein_coding MGP_AJ_T0047763.1 MGP_AJ_G0023735.1 mouse_genomes_project 17 43510780 43525725 - MGP_AJ_P0047763 Tdrd6 protein_coding protein_coding MGP_AJ_T0047764.1 MGP_AJ_G0023735.1 mouse_genomes_project 17 43511000 43515933 - Tdrd6 protein_coding processed_transcript MGP_AJ_T0047765.1 MGP_AJ_G0023735.1 mouse_genomes_project 17 43511286 43525608 - MGP_AJ_P0047765 Tdrd6 protein_coding unknown_likely_coding MGP_AJ_T0048659.1 MGP_AJ_G0024030.1 mouse_genomes_project 17 83562618 83572346 + MGP_AJ_P0048659 Pkdcc protein_coding protein_coding MGP_AJ_T0048660.1 MGP_AJ_G0024030.1 mouse_genomes_project 17 83567415 83569054 + Pkdcc protein_coding processed_transcript MGP_AJ_T0048661.1 MGP_AJ_G0024030.1 mouse_genomes_project 17 83567415 83571562 + MGP_AJ_P0048661 Pkdcc protein_coding protein_coding MGP_AJ_T0048662.1 MGP_AJ_G0024030.1 mouse_genomes_project 17 83568346 83571873 + Pkdcc protein_coding processed_transcript MGP_AJ_T0046277.1 MGP_AJ_G0023342.1 mouse_genomes_project 17 24316489 24319191 - MGP_AJ_P0046277 Nhlrc4 protein_coding protein_coding MGP_AJ_T0046278.1 MGP_AJ_G0023342.1 mouse_genomes_project 17 24318412 24319220 - Nhlrc4 protein_coding processed_transcript MGP_AJ_T0046279.1 MGP_AJ_G0023342.1 mouse_genomes_project 17 24318500 24319090 - Nhlrc4 protein_coding processed_transcript MGP_AJ_T0013229.1 MGP_AJ_G0011324.1 mouse_genomes_project 17 26249759 26250576 + processed_pseudogene processed_pseudogene MGP_AJ_T0013289.1 MGP_AJ_G0011384.1 mouse_genomes_project 17 75437922 75438501 + processed_pseudogene processed_pseudogene MGP_AJ_T0048332.1 MGP_AJ_G0023912.1 mouse_genomes_project 17 57206594 57214603 - MGP_AJ_P0048332 Tubb4a protein_coding protein_coding MGP_AJ_T0045697.1 MGP_AJ_G0023172.1 mouse_genomes_project 17 18168432 18187207 - MGP_AJ_P0045697 protein_coding protein_coding MGP_AJ_T0047581.1 MGP_AJ_G0023635.1 mouse_genomes_project 17 35717288 35719456 + MGP_AJ_P0047581 H2-M11 protein_coding protein_coding MGP_AJ_T0047913.1 MGP_AJ_G0023769.1 mouse_genomes_project 17 46207610 46211026 + MGP_AJ_P0047913 Dlk2 protein_coding protein_coding MGP_AJ_T0047914.1 MGP_AJ_G0023769.1 mouse_genomes_project 17 46207610 46213292 + MGP_AJ_P0047914 Dlk2 protein_coding protein_coding MGP_AJ_T0047915.1 MGP_AJ_G0023769.1 mouse_genomes_project 17 46208643 46213299 + MGP_AJ_P0047915 Dlk2 protein_coding protein_coding MGP_AJ_T0102431.1 MGP_AJ_G0040173.1 mouse_genomes_project 17 36347424 36348271 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0045710.1 MGP_AJ_G0023185.1 mouse_genomes_project 17 18828282 18829441 - MGP_AJ_P0045710 Vmn1r232 protein_coding protein_coding MGP_AJ_T0100924.1 MGP_AJ_G0038890.1 mouse_genomes_project 17 34212823 34212900 + Gm22589 snoRNA snoRNA MGP_AJ_T0099669.1 MGP_AJ_G0037635.1 mouse_genomes_project 17 76363550 76363656 + Gm24126 snRNA snRNA MGP_AJ_T0010168.1 MGP_AJ_G0008290.1 mouse_genomes_project 17 5208302 5208981 + miRNA miRNA MGP_AJ_T0046402.1 MGP_AJ_G0023374.1 mouse_genomes_project 17 25567247 25578489 - MGP_AJ_P0046402 Uqcc2 protein_coding protein_coding MGP_AJ_T0046403.1 MGP_AJ_G0023374.1 mouse_genomes_project 17 25567252 25578195 - Uqcc2 protein_coding processed_transcript MGP_AJ_T0046404.1 MGP_AJ_G0023374.1 mouse_genomes_project 17 25567254 25578474 - MGP_AJ_P0046404 Uqcc2 protein_coding protein_coding MGP_AJ_T0046405.1 MGP_AJ_G0023374.1 mouse_genomes_project 17 25567254 25578201 - MGP_AJ_P0046405 Uqcc2 protein_coding protein_coding MGP_AJ_T0046025.1 MGP_AJ_G0023289.1 mouse_genomes_project 17 23250695 23257175 - MGP_AJ_P0046025 Eme2 protein_coding protein_coding MGP_AJ_T0046026.1 MGP_AJ_G0023289.1 mouse_genomes_project 17 23254270 23257207 - MGP_AJ_P0046026 Eme2 protein_coding protein_coding MGP_AJ_T0046028.1 MGP_AJ_G0023289.1 mouse_genomes_project 17 23254273 23257179 - MGP_AJ_P0046028 Eme2 protein_coding nonsense_mediated_decay MGP_AJ_T0046029.1 MGP_AJ_G0023289.1 mouse_genomes_project 17 23254598 23257198 - Eme2 protein_coding retained_intron MGP_AJ_T0046030.1 MGP_AJ_G0023289.1 mouse_genomes_project 17 23254898 23256304 - Eme2 protein_coding retained_intron MGP_AJ_T0046031.1 MGP_AJ_G0023289.1 mouse_genomes_project 17 23255257 23257175 - Eme2 protein_coding retained_intron MGP_AJ_T0046032.1 MGP_AJ_G0023289.1 mouse_genomes_project 17 23255480 23257182 - Eme2 protein_coding retained_intron MGP_AJ_T0046033.1 MGP_AJ_G0023289.1 mouse_genomes_project 17 23255865 23257145 - Eme2 protein_coding retained_intron MGP_AJ_T0047459.1 MGP_AJ_G0023608.1 mouse_genomes_project 17 34902806 34912639 + MGP_AJ_P0047459 Flot1 protein_coding protein_coding MGP_AJ_T0047460.1 MGP_AJ_G0023608.1 mouse_genomes_project 17 34902923 34912462 + MGP_AJ_P0047460 Flot1 protein_coding protein_coding MGP_AJ_T0047461.1 MGP_AJ_G0023608.1 mouse_genomes_project 17 34902958 34909748 + MGP_AJ_P0047461 Flot1 protein_coding nonsense_mediated_decay MGP_AJ_T0047462.1 MGP_AJ_G0023608.1 mouse_genomes_project 17 34903002 34904009 + Flot1 protein_coding retained_intron MGP_AJ_T0047463.1 MGP_AJ_G0023608.1 mouse_genomes_project 17 34903102 34905353 + MGP_AJ_P0047463 Flot1 protein_coding protein_coding MGP_AJ_T0047464.1 MGP_AJ_G0023608.1 mouse_genomes_project 17 34903125 34905365 + MGP_AJ_P0047464 Flot1 protein_coding protein_coding MGP_AJ_T0047465.1 MGP_AJ_G0023608.1 mouse_genomes_project 17 34903169 34905352 + MGP_AJ_P0047465 Flot1 protein_coding protein_coding MGP_AJ_T0047466.1 MGP_AJ_G0023608.1 mouse_genomes_project 17 34903606 34904539 + Flot1 protein_coding retained_intron MGP_AJ_T0047467.1 MGP_AJ_G0023608.1 mouse_genomes_project 17 34909809 34912478 + Flot1 protein_coding retained_intron MGP_AJ_T0047468.1 MGP_AJ_G0023608.1 mouse_genomes_project 17 34910265 34912492 + Flot1 protein_coding retained_intron MGP_AJ_T0047469.1 MGP_AJ_G0023608.1 mouse_genomes_project 17 34910404 34911236 + Flot1 protein_coding retained_intron MGP_AJ_T0003710.1 MGP_AJ_G0003345.1 mouse_genomes_project 17 7993537 8066075 + Gm16168 antisense antisense MGP_AJ_T0003711.1 MGP_AJ_G0003345.1 mouse_genomes_project 17 7993544 8049847 + Gm16168 antisense antisense MGP_AJ_T0046359.1 MGP_AJ_G0023363.1 mouse_genomes_project 17 25070147 25093412 + MGP_AJ_P0046359 Atp6v0e protein_coding protein_coding MGP_AJ_T0046360.1 MGP_AJ_G0023363.1 mouse_genomes_project 17 25070163 25091719 + MGP_AJ_P0046360 Atp6v0e protein_coding protein_coding MGP_AJ_T0006973.1 MGP_AJ_G0005734.1 mouse_genomes_project 17 64631070 64673562 - AU016765 lincRNA lincRNA MGP_AJ_T0006974.1 MGP_AJ_G0005734.1 mouse_genomes_project 17 64631123 64673520 - AU016765 lincRNA lincRNA MGP_AJ_T0006975.1 MGP_AJ_G0005734.1 mouse_genomes_project 17 64631126 64673600 - AU016765 lincRNA lincRNA MGP_AJ_T0006976.1 MGP_AJ_G0005734.1 mouse_genomes_project 17 64631128 64673443 - AU016765 lincRNA lincRNA MGP_AJ_T0098625.1 MGP_AJ_G0036609.1 mouse_genomes_project 17 84331257 84331366 + Gm23905 rRNA rRNA MGP_AJ_T0046772.1 MGP_AJ_G0023459.1 mouse_genomes_project 17 31094872 31124182 - MGP_AJ_P0046772 Akap8l protein_coding protein_coding MGP_AJ_T0006928.1 MGP_AJ_G0005700.1 mouse_genomes_project 17 27527815 27529060 - Gm16196 lincRNA lincRNA MGP_AJ_T0099640.1 MGP_AJ_G0037606.1 mouse_genomes_project 17 1740366 1740473 + Gm23186 snRNA snRNA MGP_AJ_T0003769.1 MGP_AJ_G0003386.1 mouse_genomes_project 17 44619027 44622726 + Runx2os2 antisense antisense MGP_AJ_T0013292.1 MGP_AJ_G0011387.1 mouse_genomes_project 17 79187165 79188330 - processed_pseudogene processed_pseudogene MGP_AJ_T0000996.1 MGP_AJ_G0000927.1 mouse_genomes_project 17 80146556 80162383 - TEC TEC MGP_AJ_T0048526.1 MGP_AJ_G0023971.1 mouse_genomes_project 17 71964508 71974275 - MGP_AJ_P0048526 BC027072 protein_coding protein_coding MGP_AJ_T0048758.1 MGP_AJ_G0024066.1 mouse_genomes_project 17 88424912 88425329 + MGP_AJ_P0048758 Rpl36-ps4 protein_coding protein_coding MGP_AJ_T0003770.1 MGP_AJ_G0003387.1 mouse_genomes_project 17 44644429 44646170 + Runx2os1 antisense antisense MGP_AJ_T0010170.1 MGP_AJ_G0008292.1 mouse_genomes_project 17 15481935 15482052 - Gm25927 miRNA miRNA MGP_AJ_T0010176.1 MGP_AJ_G0008298.1 mouse_genomes_project 17 22595652 22595715 - Mir6965 miRNA miRNA MGP_AJ_T0047703.1 MGP_AJ_G0023697.1 mouse_genomes_project 17 37453281 37454360 + MGP_AJ_P0047703 Olfr135 protein_coding protein_coding MGP_AJ_T0048245.1 MGP_AJ_G0023882.1 mouse_genomes_project 17 56401995 56421742 + MGP_AJ_P0048245 Uhrf1 protein_coding protein_coding MGP_AJ_T0048246.1 MGP_AJ_G0023882.1 mouse_genomes_project 17 56402252 56408565 + MGP_AJ_P0048246 Uhrf1 protein_coding protein_coding MGP_AJ_T0048247.1 MGP_AJ_G0023882.1 mouse_genomes_project 17 56410431 56410945 + Uhrf1 protein_coding retained_intron MGP_AJ_T0048248.1 MGP_AJ_G0023882.1 mouse_genomes_project 17 56417265 56421579 + Uhrf1 protein_coding retained_intron MGP_AJ_T0098619.1 MGP_AJ_G0036603.1 mouse_genomes_project 17 47230344 47230417 + Gm26216 rRNA rRNA MGP_AJ_T0046998.1 MGP_AJ_G0023513.1 mouse_genomes_project 17 32759106 32762418 - MGP_AJ_P0046998 H2-Q4 protein_coding protein_coding MGP_AJ_T0047299.1 MGP_AJ_G0023570.1 mouse_genomes_project 17 34032893 34035870 + MGP_AJ_P0047299 Ddah2 protein_coding protein_coding MGP_AJ_T0047300.1 MGP_AJ_G0023570.1 mouse_genomes_project 17 34033590 34034681 + MGP_AJ_P0047300 Ddah2 protein_coding protein_coding MGP_AJ_T0047301.1 MGP_AJ_G0023570.1 mouse_genomes_project 17 34034667 34035400 + Ddah2 protein_coding retained_intron MGP_AJ_T0046851.1 MGP_AJ_G0023483.1 mouse_genomes_project 17 32070733 32071688 + MGP_AJ_P0046851 Olfr63 protein_coding protein_coding MGP_AJ_T0003722.1 MGP_AJ_G0003351.1 mouse_genomes_project 17 22123627 22129082 - Gm15947 antisense antisense MGP_AJ_T0045975.1 MGP_AJ_G0023276.1 mouse_genomes_project 17 23061715 23071370 - MGP_AJ_P0045975 Tbl3 protein_coding protein_coding MGP_AJ_T0045984.1 MGP_AJ_G0023276.1 mouse_genomes_project 17 23064229 23071341 - Tbl3 protein_coding retained_intron MGP_AJ_T0045985.1 MGP_AJ_G0023276.1 mouse_genomes_project 17 23064658 23066280 - MGP_AJ_P0045985 Tbl3 protein_coding protein_coding MGP_AJ_T0045986.1 MGP_AJ_G0023276.1 mouse_genomes_project 17 23065790 23067113 - Tbl3 protein_coding retained_intron MGP_AJ_T0045987.1 MGP_AJ_G0023276.1 mouse_genomes_project 17 23068397 23069534 - Tbl3 protein_coding retained_intron MGP_AJ_T0048623.1 MGP_AJ_G0024009.1 mouse_genomes_project 17 79964892 79966897 + MGP_AJ_P0048623 4921513D11Rik protein_coding protein_coding MGP_AJ_T0048039.1 MGP_AJ_G0023812.1 mouse_genomes_project 17 47638656 47640195 - MGP_AJ_P0048039 Tomm6 protein_coding protein_coding MGP_AJ_T0048041.1 MGP_AJ_G0023812.1 mouse_genomes_project 17 47638750 47640398 - Tomm6 protein_coding retained_intron MGP_AJ_T0048042.1 MGP_AJ_G0023812.1 mouse_genomes_project 17 47638750 47640080 - MGP_AJ_P0048042 Tomm6 protein_coding protein_coding MGP_AJ_T0047691.1 MGP_AJ_G0023687.1 mouse_genomes_project 17 37083556 37084674 + MGP_AJ_P0047691 Olfr125 protein_coding protein_coding MGP_AJ_T0013268.1 MGP_AJ_G0011363.1 mouse_genomes_project 17 53353495 53354089 + processed_pseudogene processed_pseudogene MGP_AJ_T0046098.1 MGP_AJ_G0023302.1 mouse_genomes_project 17 23557180 23606105 + MGP_AJ_P0046098 protein_coding protein_coding MGP_AJ_T0046099.1 MGP_AJ_G0023302.1 mouse_genomes_project 17 23557709 23606105 + MGP_AJ_P0046099 protein_coding protein_coding MGP_AJ_T0046100.1 MGP_AJ_G0023302.1 mouse_genomes_project 17 23558268 23574607 + MGP_AJ_P0046100 protein_coding nonsense_mediated_decay MGP_AJ_T0046101.1 MGP_AJ_G0023302.1 mouse_genomes_project 17 23579541 23582237 + protein_coding retained_intron MGP_AJ_T0046102.1 MGP_AJ_G0023302.1 mouse_genomes_project 17 23593556 23600409 + MGP_AJ_P0046102 protein_coding protein_coding MGP_AJ_T0046103.1 MGP_AJ_G0023302.1 mouse_genomes_project 17 23593599 23606104 + MGP_AJ_P0046103 protein_coding protein_coding MGP_AJ_T0046105.1 MGP_AJ_G0023302.1 mouse_genomes_project 17 23593796 23603529 + MGP_AJ_P0046105 protein_coding protein_coding MGP_AJ_T0013206.1 MGP_AJ_G0011301.1 mouse_genomes_project 17 2923391 2923689 + processed_pseudogene processed_pseudogene MGP_AJ_T0100923.1 MGP_AJ_G0038889.1 mouse_genomes_project 17 34134877 34135011 - Gm23442 snoRNA snoRNA MGP_AJ_T0045694.1 MGP_AJ_G0023169.1 mouse_genomes_project 17 18005668 18006902 - MGP_AJ_P0045694 protein_coding protein_coding MGP_AJ_T0045439.1 MGP_AJ_G0023088.1 mouse_genomes_project 17 4401116 4424267 + MGP_AJ_P0045439 protein_coding protein_coding MGP_AJ_T0045724.1 MGP_AJ_G0023193.1 mouse_genomes_project 17 19314681 19315631 + MGP_AJ_P0045724 Vmn1r237 protein_coding protein_coding MGP_AJ_T0047953.1 MGP_AJ_G0023781.1 mouse_genomes_project 17 46577907 46579332 + Mrpl2 protein_coding processed_transcript MGP_AJ_T0047954.1 MGP_AJ_G0023781.1 mouse_genomes_project 17 46577934 46581804 + MGP_AJ_P0047954 Mrpl2 protein_coding protein_coding MGP_AJ_T0047955.1 MGP_AJ_G0023781.1 mouse_genomes_project 17 46577967 46581803 + MGP_AJ_P0047955 Mrpl2 protein_coding protein_coding MGP_AJ_T0047956.1 MGP_AJ_G0023781.1 mouse_genomes_project 17 46580676 46581663 + Mrpl2 protein_coding processed_transcript MGP_AJ_T0006912.1 MGP_AJ_G0005687.1 mouse_genomes_project 17 20986182 21020646 - Gm16386 lincRNA lincRNA MGP_AJ_T0102390.1 MGP_AJ_G0040132.1 mouse_genomes_project 17 19216031 19251288 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0011435.1 MGP_AJ_G0009557.1 mouse_genomes_project 17 80546917 80547164 - Gm25706 misc_RNA misc_RNA MGP_AJ_T0046348.1 MGP_AJ_G0023360.1 mouse_genomes_project 17 24895818 24898749 - MGP_AJ_P0046348 Dusp1 protein_coding protein_coding MGP_AJ_T0046349.1 MGP_AJ_G0023360.1 mouse_genomes_project 17 24895819 24898704 - Dusp1 protein_coding retained_intron MGP_AJ_T0046350.1 MGP_AJ_G0023360.1 mouse_genomes_project 17 24896745 24897953 - Dusp1 protein_coding retained_intron MGP_AJ_T0000978.1 MGP_AJ_G0000910.1 mouse_genomes_project 17 8781353 8784200 - TEC TEC MGP_AJ_T0010175.1 MGP_AJ_G0008297.1 mouse_genomes_project 17 22589679 22589757 - Mir5134 miRNA miRNA MGP_AJ_T0048090.1 MGP_AJ_G0023823.1 mouse_genomes_project 17 48118541 48134428 - MGP_AJ_P0048090 protein_coding protein_coding MGP_AJ_T0047208.1 MGP_AJ_G0023554.1 mouse_genomes_project 17 33820575 33826577 + MGP_AJ_P0047208 Nelfe protein_coding protein_coding MGP_AJ_T0047209.1 MGP_AJ_G0023554.1 mouse_genomes_project 17 33820582 33826462 + MGP_AJ_P0047209 Nelfe protein_coding protein_coding MGP_AJ_T0047210.1 MGP_AJ_G0023554.1 mouse_genomes_project 17 33820592 33824297 + MGP_AJ_P0047210 Nelfe protein_coding protein_coding MGP_AJ_T0047211.1 MGP_AJ_G0023554.1 mouse_genomes_project 17 33820592 33826580 + MGP_AJ_P0047211 Nelfe protein_coding protein_coding MGP_AJ_T0047212.1 MGP_AJ_G0023554.1 mouse_genomes_project 17 33822792 33824053 + Nelfe protein_coding retained_intron MGP_AJ_T0047213.1 MGP_AJ_G0023554.1 mouse_genomes_project 17 33824119 33824734 + Nelfe protein_coding retained_intron MGP_AJ_T0047214.1 MGP_AJ_G0023554.1 mouse_genomes_project 17 33824463 33824962 + Nelfe protein_coding retained_intron MGP_AJ_T0100926.1 MGP_AJ_G0038892.1 mouse_genomes_project 17 48607010 48607142 + Gm24071 snoRNA snoRNA MGP_AJ_T0048231.1 MGP_AJ_G0023872.1 mouse_genomes_project 17 56201747 56207743 - MGP_AJ_P0048231 Plin5 protein_coding protein_coding MGP_AJ_T0048232.1 MGP_AJ_G0023872.1 mouse_genomes_project 17 56201753 56207445 - MGP_AJ_P0048232 Plin5 protein_coding protein_coding MGP_AJ_T0046430.1 MGP_AJ_G0023382.1 mouse_genomes_project 17 26095919 26100833 - MGP_AJ_P0046430 Rps10 protein_coding protein_coding MGP_AJ_T0046431.1 MGP_AJ_G0023382.1 mouse_genomes_project 17 26095921 26102183 - MGP_AJ_P0046431 Rps10 protein_coding protein_coding MGP_AJ_T0046432.1 MGP_AJ_G0023382.1 mouse_genomes_project 17 26095922 26100797 - MGP_AJ_P0046432 Rps10 protein_coding protein_coding MGP_AJ_T0046433.1 MGP_AJ_G0023382.1 mouse_genomes_project 17 26095962 26100032 - MGP_AJ_P0046433 Rps10 protein_coding protein_coding MGP_AJ_T0046434.1 MGP_AJ_G0023382.1 mouse_genomes_project 17 26096527 26100833 - Rps10 protein_coding processed_transcript MGP_AJ_T0046435.1 MGP_AJ_G0023382.1 mouse_genomes_project 17 26097156 26099756 - Rps10 protein_coding retained_intron MGP_AJ_T0046436.1 MGP_AJ_G0023382.1 mouse_genomes_project 17 26097452 26100786 - Rps10 protein_coding retained_intron MGP_AJ_T0046437.1 MGP_AJ_G0023382.1 mouse_genomes_project 17 26099645 26100801 - Rps10 protein_coding processed_transcript MGP_AJ_T0045688.1 MGP_AJ_G0023163.1 mouse_genomes_project 17 16873782 16886735 + MGP_AJ_P0045688 protein_coding protein_coding MGP_AJ_T0047991.1 MGP_AJ_G0023798.1 mouse_genomes_project 17 46960426 46960687 - MGP_AJ_P0047991 Gm16494 protein_coding protein_coding MGP_AJ_T0045390.1 MGP_AJ_G0023073.1 mouse_genomes_project 17 2061950 2166716 + Arid1b protein_coding processed_transcript MGP_AJ_T0045391.1 MGP_AJ_G0023073.1 mouse_genomes_project 17 2062554 2414493 + MGP_AJ_P0045391 Arid1b protein_coding protein_coding MGP_AJ_T0045392.1 MGP_AJ_G0023073.1 mouse_genomes_project 17 2062710 2415510 + MGP_AJ_P0045392 Arid1b protein_coding protein_coding MGP_AJ_T0045393.1 MGP_AJ_G0023073.1 mouse_genomes_project 17 2064044 2167169 + Arid1b protein_coding retained_intron MGP_AJ_T0045394.1 MGP_AJ_G0023073.1 mouse_genomes_project 17 2108813 2197368 + Arid1b protein_coding retained_intron MGP_AJ_T0047486.1 MGP_AJ_G0023613.1 mouse_genomes_project 17 34960806 34974853 + MGP_AJ_P0047486 Dhx16 protein_coding protein_coding MGP_AJ_T0047487.1 MGP_AJ_G0023613.1 mouse_genomes_project 17 34960812 34974808 + MGP_AJ_P0047487 Dhx16 protein_coding nonsense_mediated_decay MGP_AJ_T0047488.1 MGP_AJ_G0023613.1 mouse_genomes_project 17 34969327 34971140 + Dhx16 protein_coding retained_intron MGP_AJ_T0047489.1 MGP_AJ_G0023613.1 mouse_genomes_project 17 34969481 34970199 + Dhx16 protein_coding retained_intron MGP_AJ_T0047490.1 MGP_AJ_G0023613.1 mouse_genomes_project 17 34969487 34970287 + Dhx16 protein_coding retained_intron MGP_AJ_T0047491.1 MGP_AJ_G0023613.1 mouse_genomes_project 17 34969571 34971038 + Dhx16 protein_coding retained_intron MGP_AJ_T0047492.1 MGP_AJ_G0023613.1 mouse_genomes_project 17 34970826 34974849 + MGP_AJ_P0047492 Dhx16 protein_coding protein_coding MGP_AJ_T0047493.1 MGP_AJ_G0023613.1 mouse_genomes_project 17 34972323 34974736 + Dhx16 protein_coding retained_intron MGP_AJ_T0048310.1 MGP_AJ_G0023904.1 mouse_genomes_project 17 57118660 57120634 + MGP_AJ_P0048310 Alkbh7 protein_coding protein_coding MGP_AJ_T0048311.1 MGP_AJ_G0023904.1 mouse_genomes_project 17 57118664 57120645 + MGP_AJ_P0048311 Alkbh7 protein_coding protein_coding MGP_AJ_T0048312.1 MGP_AJ_G0023904.1 mouse_genomes_project 17 57119801 57120459 + Alkbh7 protein_coding retained_intron MGP_AJ_T0048318.1 MGP_AJ_G0023909.1 mouse_genomes_project 17 57166441 57185855 - MGP_AJ_P0048318 Slc25a23 protein_coding protein_coding MGP_AJ_T0048319.1 MGP_AJ_G0023909.1 mouse_genomes_project 17 57167929 57178943 - MGP_AJ_P0048319 Slc25a23 protein_coding protein_coding MGP_AJ_T0048320.1 MGP_AJ_G0023909.1 mouse_genomes_project 17 57168215 57179948 - MGP_AJ_P0048320 Slc25a23 protein_coding protein_coding MGP_AJ_T0048321.1 MGP_AJ_G0023909.1 mouse_genomes_project 17 57169777 57179701 - MGP_AJ_P0048321 Slc25a23 protein_coding protein_coding MGP_AJ_T0048322.1 MGP_AJ_G0023909.1 mouse_genomes_project 17 57169921 57181504 - MGP_AJ_P0048322 Slc25a23 protein_coding nonsense_mediated_decay MGP_AJ_T0048323.1 MGP_AJ_G0023909.1 mouse_genomes_project 17 57182354 57185811 - Slc25a23 protein_coding retained_intron MGP_AJ_T0047802.1 MGP_AJ_G0023751.1 mouse_genomes_project 17 45469518 45475025 - MGP_AJ_P0047802 Hsp90ab1 protein_coding protein_coding MGP_AJ_T0047803.1 MGP_AJ_G0023751.1 mouse_genomes_project 17 45470601 45471483 - Hsp90ab1 protein_coding retained_intron MGP_AJ_T0047804.1 MGP_AJ_G0023751.1 mouse_genomes_project 17 45470761 45475007 - MGP_AJ_P0047804 Hsp90ab1 protein_coding protein_coding MGP_AJ_T0047805.1 MGP_AJ_G0023751.1 mouse_genomes_project 17 45471324 45475009 - MGP_AJ_P0047805 Hsp90ab1 protein_coding protein_coding MGP_AJ_T0047806.1 MGP_AJ_G0023751.1 mouse_genomes_project 17 45472191 45473327 - Hsp90ab1 protein_coding retained_intron MGP_AJ_T0047807.1 MGP_AJ_G0023751.1 mouse_genomes_project 17 45472407 45475009 - MGP_AJ_P0047807 Hsp90ab1 protein_coding nonsense_mediated_decay MGP_AJ_T0047808.1 MGP_AJ_G0023751.1 mouse_genomes_project 17 45472762 45475025 - Hsp90ab1 protein_coding retained_intron MGP_AJ_T0047809.1 MGP_AJ_G0023751.1 mouse_genomes_project 17 45473282 45474299 - MGP_AJ_P0047809 Hsp90ab1 protein_coding protein_coding MGP_AJ_T0102445.1 MGP_AJ_G0040187.1 mouse_genomes_project 17 53877014 53877634 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0047582.1 MGP_AJ_G0023636.1 mouse_genomes_project 17 35828415 35831796 - MGP_AJ_P0047582 H2-M9 protein_coding protein_coding MGP_AJ_T0047583.1 MGP_AJ_G0023636.1 mouse_genomes_project 17 35829536 35831796 - MGP_AJ_P0047583 H2-M9 protein_coding protein_coding MGP_AJ_T0013221.1 MGP_AJ_G0011316.1 mouse_genomes_project 17 20930634 20931052 + processed_pseudogene processed_pseudogene MGP_AJ_T0048598.1 MGP_AJ_G0024000.1 mouse_genomes_project 17 79188989 79219266 - MGP_AJ_P0048598 Eif2ak2 protein_coding protein_coding MGP_AJ_T0048599.1 MGP_AJ_G0024000.1 mouse_genomes_project 17 79191766 79195398 - Eif2ak2 protein_coding processed_transcript MGP_AJ_T0048600.1 MGP_AJ_G0024000.1 mouse_genomes_project 17 79210196 79219241 - Eif2ak2 protein_coding processed_transcript MGP_AJ_T0048601.1 MGP_AJ_G0024000.1 mouse_genomes_project 17 79214709 79219247 - Eif2ak2 protein_coding processed_transcript MGP_AJ_T0011430.1 MGP_AJ_G0009552.1 mouse_genomes_project 17 48681843 48682101 - Gm23642 misc_RNA misc_RNA MGP_AJ_T0048342.1 MGP_AJ_G0023919.1 mouse_genomes_project 17 57380474 57395613 + MGP_AJ_P0048342 Trip10 protein_coding protein_coding MGP_AJ_T0047865.1 MGP_AJ_G0023759.1 mouse_genomes_project 17 46019435 46037601 + MGP_AJ_P0047865 Mrps18a protein_coding protein_coding MGP_AJ_T0047866.1 MGP_AJ_G0023759.1 mouse_genomes_project 17 46019444 46031818 + Mrps18a protein_coding retained_intron MGP_AJ_T0047867.1 MGP_AJ_G0023759.1 mouse_genomes_project 17 46019445 46034556 + MGP_AJ_P0047867 Mrps18a protein_coding protein_coding MGP_AJ_T0047869.1 MGP_AJ_G0023759.1 mouse_genomes_project 17 46031493 46037561 + Mrps18a protein_coding processed_transcript MGP_AJ_T0047870.1 MGP_AJ_G0023759.1 mouse_genomes_project 17 46033965 46036414 + Mrps18a protein_coding retained_intron MGP_AJ_T0047871.1 MGP_AJ_G0023759.1 mouse_genomes_project 17 46034148 46037484 + Mrps18a protein_coding retained_intron MGP_AJ_T0045875.1 MGP_AJ_G0023251.1 mouse_genomes_project 17 22516744 22519616 - Atp6v0c protein_coding processed_transcript MGP_AJ_T0045876.1 MGP_AJ_G0023251.1 mouse_genomes_project 17 22516744 22522054 - MGP_AJ_P0045876 Atp6v0c protein_coding protein_coding MGP_AJ_T0045877.1 MGP_AJ_G0023251.1 mouse_genomes_project 17 22517031 22522270 - MGP_AJ_P0045877 Atp6v0c protein_coding protein_coding MGP_AJ_T0045878.1 MGP_AJ_G0023251.1 mouse_genomes_project 17 22517298 22522241 - MGP_AJ_P0045878 Atp6v0c protein_coding protein_coding MGP_AJ_T0045879.1 MGP_AJ_G0023251.1 mouse_genomes_project 17 22517416 22521659 - Atp6v0c protein_coding processed_transcript MGP_AJ_T0045880.1 MGP_AJ_G0023251.1 mouse_genomes_project 17 22517420 22522295 - MGP_AJ_P0045880 Atp6v0c protein_coding protein_coding MGP_AJ_T0003752.1 MGP_AJ_G0003372.1 mouse_genomes_project 17 33499493 33499919 + Gm20463 antisense antisense MGP_AJ_T0046628.1 MGP_AJ_G0023422.1 mouse_genomes_project 17 27911737 27931464 + MGP_AJ_P0046628 protein_coding nonsense_mediated_decay MGP_AJ_T0046629.1 MGP_AJ_G0023422.1 mouse_genomes_project 17 27911755 27915882 + protein_coding processed_transcript MGP_AJ_T0046630.1 MGP_AJ_G0023422.1 mouse_genomes_project 17 27911765 27918324 + protein_coding retained_intron MGP_AJ_T0046631.1 MGP_AJ_G0023422.1 mouse_genomes_project 17 27911765 27931357 + MGP_AJ_P0046631 protein_coding protein_coding MGP_AJ_T0046632.1 MGP_AJ_G0023422.1 mouse_genomes_project 17 27916259 27919279 + protein_coding retained_intron MGP_AJ_T0046633.1 MGP_AJ_G0023422.1 mouse_genomes_project 17 27920284 27926817 + protein_coding retained_intron MGP_AJ_T0046634.1 MGP_AJ_G0023422.1 mouse_genomes_project 17 27920296 27926189 + protein_coding retained_intron MGP_AJ_T0046635.1 MGP_AJ_G0023422.1 mouse_genomes_project 17 27928326 27930252 + protein_coding processed_transcript MGP_AJ_T0046412.1 MGP_AJ_G0023378.1 mouse_genomes_project 17 26015035 26025545 + MGP_AJ_P0046412 protein_coding protein_coding MGP_AJ_T0046413.1 MGP_AJ_G0023378.1 mouse_genomes_project 17 26015051 26025543 + MGP_AJ_P0046413 protein_coding protein_coding MGP_AJ_T0046414.1 MGP_AJ_G0023378.1 mouse_genomes_project 17 26015096 26025538 + MGP_AJ_P0046414 protein_coding protein_coding MGP_AJ_T0047965.1 MGP_AJ_G0023784.1 mouse_genomes_project 17 46607035 46613420 - MGP_AJ_P0047965 Klhdc3 protein_coding protein_coding MGP_AJ_T0047966.1 MGP_AJ_G0023784.1 mouse_genomes_project 17 46607038 46613420 - MGP_AJ_P0047966 Klhdc3 protein_coding protein_coding MGP_AJ_T0045711.1 MGP_AJ_G0023186.1 mouse_genomes_project 17 18862579 18883145 + MGP_AJ_P0045711 Ppp2r1a protein_coding protein_coding MGP_AJ_T0045712.1 MGP_AJ_G0023186.1 mouse_genomes_project 17 18862755 18876009 + MGP_AJ_P0045712 Ppp2r1a protein_coding nonsense_mediated_decay MGP_AJ_T0045713.1 MGP_AJ_G0023186.1 mouse_genomes_project 17 18873808 18876062 + Ppp2r1a protein_coding retained_intron MGP_AJ_T0045714.1 MGP_AJ_G0023186.1 mouse_genomes_project 17 18874009 18876734 + MGP_AJ_P0045714 Ppp2r1a protein_coding protein_coding MGP_AJ_T0045715.1 MGP_AJ_G0023186.1 mouse_genomes_project 17 18875965 18877823 + Ppp2r1a protein_coding retained_intron MGP_AJ_T0045716.1 MGP_AJ_G0023186.1 mouse_genomes_project 17 18876213 18879167 + Ppp2r1a protein_coding retained_intron MGP_AJ_T0045717.1 MGP_AJ_G0023186.1 mouse_genomes_project 17 18877714 18878491 + Ppp2r1a protein_coding retained_intron MGP_AJ_T0102442.1 MGP_AJ_G0040184.1 mouse_genomes_project 17 36687260 36687817 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0010220.1 MGP_AJ_G0008342.1 mouse_genomes_project 17 64558214 64558316 + Mir6420 miRNA miRNA MGP_AJ_T0046826.1 MGP_AJ_G0023472.1 mouse_genomes_project 17 31680392 31689847 - MGP_AJ_P0046826 Zfp870 protein_coding unknown_likely_coding MGP_AJ_T0048447.1 MGP_AJ_G0023957.1 mouse_genomes_project 17 70119447 70995048 + MGP_AJ_P0048447 Dlgap1 protein_coding protein_coding MGP_AJ_T0048448.1 MGP_AJ_G0023957.1 mouse_genomes_project 17 70119620 70993359 + MGP_AJ_P0048448 Dlgap1 protein_coding protein_coding MGP_AJ_T0048449.1 MGP_AJ_G0023957.1 mouse_genomes_project 17 70119742 70678241 + Dlgap1 protein_coding retained_intron MGP_AJ_T0048450.1 MGP_AJ_G0023957.1 mouse_genomes_project 17 70119742 70230564 + Dlgap1 protein_coding retained_intron MGP_AJ_T0048451.1 MGP_AJ_G0023957.1 mouse_genomes_project 17 70119747 70823419 + Dlgap1 protein_coding retained_intron MGP_AJ_T0048452.1 MGP_AJ_G0023957.1 mouse_genomes_project 17 70119776 70989431 + MGP_AJ_P0048452 Dlgap1 protein_coding protein_coding MGP_AJ_T0048453.1 MGP_AJ_G0023957.1 mouse_genomes_project 17 70119795 70755713 + Dlgap1 protein_coding retained_intron MGP_AJ_T0048454.1 MGP_AJ_G0023957.1 mouse_genomes_project 17 70582314 70993437 + MGP_AJ_P0048454 Dlgap1 protein_coding protein_coding MGP_AJ_T0048455.1 MGP_AJ_G0023957.1 mouse_genomes_project 17 70675460 70991869 + MGP_AJ_P0048455 Dlgap1 protein_coding protein_coding MGP_AJ_T0048456.1 MGP_AJ_G0023957.1 mouse_genomes_project 17 70681797 70757082 + Dlgap1 protein_coding retained_intron MGP_AJ_T0048457.1 MGP_AJ_G0023957.1 mouse_genomes_project 17 70681856 70957376 + Dlgap1 protein_coding retained_intron MGP_AJ_T0048458.1 MGP_AJ_G0023957.1 mouse_genomes_project 17 70681856 70995044 + MGP_AJ_P0048458 Dlgap1 protein_coding protein_coding MGP_AJ_T0048459.1 MGP_AJ_G0023957.1 mouse_genomes_project 17 70681865 70992180 + MGP_AJ_P0048459 Dlgap1 protein_coding protein_coding MGP_AJ_T0048460.1 MGP_AJ_G0023957.1 mouse_genomes_project 17 70681882 70991937 + MGP_AJ_P0048460 Dlgap1 protein_coding protein_coding MGP_AJ_T0048461.1 MGP_AJ_G0023957.1 mouse_genomes_project 17 70722369 70884451 + Dlgap1 protein_coding retained_intron MGP_AJ_T0048462.1 MGP_AJ_G0023957.1 mouse_genomes_project 17 70722604 70989728 + MGP_AJ_P0048462 Dlgap1 protein_coding protein_coding MGP_AJ_T0046367.1 MGP_AJ_G0023365.1 mouse_genomes_project 17 25184023 25188861 + Bnip1 protein_coding retained_intron MGP_AJ_T0046368.1 MGP_AJ_G0023365.1 mouse_genomes_project 17 25184032 25188862 + Bnip1 protein_coding retained_intron MGP_AJ_T0046369.1 MGP_AJ_G0023365.1 mouse_genomes_project 17 25184034 25195253 + MGP_AJ_P0046369 Bnip1 protein_coding protein_coding MGP_AJ_T0046370.1 MGP_AJ_G0023365.1 mouse_genomes_project 17 25184034 25194905 + MGP_AJ_P0046370 Bnip1 protein_coding protein_coding MGP_AJ_T0046371.1 MGP_AJ_G0023365.1 mouse_genomes_project 17 25184062 25195244 + MGP_AJ_P0046371 Bnip1 protein_coding nonsense_mediated_decay MGP_AJ_T0046372.1 MGP_AJ_G0023365.1 mouse_genomes_project 17 25184076 25194801 + MGP_AJ_P0046372 Bnip1 protein_coding nonsense_mediated_decay MGP_AJ_T0046373.1 MGP_AJ_G0023365.1 mouse_genomes_project 17 25189110 25192734 + Bnip1 protein_coding retained_intron MGP_AJ_T0046374.1 MGP_AJ_G0023365.1 mouse_genomes_project 17 25193500 25195289 + Bnip1 protein_coding retained_intron MGP_AJ_T0046343.1 MGP_AJ_G0023358.1 mouse_genomes_project 17 24681914 24682802 - MGP_AJ_P0046343 protein_coding protein_coding MGP_AJ_T0048529.1 MGP_AJ_G0023973.1 mouse_genomes_project 17 72094371 72839287 - MGP_AJ_P0048529 Alk protein_coding protein_coding MGP_AJ_T0048669.1 MGP_AJ_G0024034.1 mouse_genomes_project 17 84066039 84168405 + MGP_AJ_P0048669 Mta3 protein_coding protein_coding MGP_AJ_T0048670.1 MGP_AJ_G0024034.1 mouse_genomes_project 17 84066039 84180949 + MGP_AJ_P0048670 Mta3 protein_coding protein_coding MGP_AJ_T0048671.1 MGP_AJ_G0024034.1 mouse_genomes_project 17 84066039 84168403 + MGP_AJ_P0048671 Mta3 protein_coding protein_coding MGP_AJ_T0048672.1 MGP_AJ_G0024034.1 mouse_genomes_project 17 84066060 84197339 + MGP_AJ_P0048672 Mta3 protein_coding nonsense_mediated_decay MGP_AJ_T0048673.1 MGP_AJ_G0024034.1 mouse_genomes_project 17 84066067 84190628 + MGP_AJ_P0048673 Mta3 protein_coding protein_coding MGP_AJ_T0048674.1 MGP_AJ_G0024034.1 mouse_genomes_project 17 84066134 84199372 + MGP_AJ_P0048674 Mta3 protein_coding unknown_likely_coding MGP_AJ_T0048675.1 MGP_AJ_G0024034.1 mouse_genomes_project 17 84102226 84126936 + Mta3 protein_coding processed_transcript MGP_AJ_T0048676.1 MGP_AJ_G0024034.1 mouse_genomes_project 17 84128701 84175770 + MGP_AJ_P0048676 Mta3 protein_coding protein_coding MGP_AJ_T0048677.1 MGP_AJ_G0024034.1 mouse_genomes_project 17 84159870 84196039 + MGP_AJ_P0048677 Mta3 protein_coding protein_coding MGP_AJ_T0048678.1 MGP_AJ_G0024034.1 mouse_genomes_project 17 84170952 84180123 + Mta3 protein_coding processed_transcript MGP_AJ_T0048290.1 MGP_AJ_G0023888.1 mouse_genomes_project 17 56718474 56720794 - MGP_AJ_P0048290 2410015M20Rik protein_coding protein_coding MGP_AJ_T0046859.1 MGP_AJ_G0023487.1 mouse_genomes_project 17 32206906 32208279 + MGP_AJ_P0046859 Actl9 protein_coding protein_coding MGP_AJ_T0048530.1 MGP_AJ_G0023974.1 mouse_genomes_project 17 73077311 73091803 + MGP_AJ_P0048530 Ypel5 protein_coding protein_coding MGP_AJ_T0047893.1 MGP_AJ_G0023764.1 mouse_genomes_project 17 46112730 46152225 + MGP_AJ_P0047893 Xpo5 protein_coding protein_coding MGP_AJ_T0045752.1 MGP_AJ_G0023208.1 mouse_genomes_project 17 20236078 20266601 - MGP_AJ_P0045752 Zfp947 protein_coding protein_coding MGP_AJ_T0045695.1 MGP_AJ_G0023170.1 mouse_genomes_project 17 18005676 18006902 - MGP_AJ_P0045695 Fpr-rs7 protein_coding protein_coding MGP_AJ_T0013220.1 MGP_AJ_G0011315.1 mouse_genomes_project 17 20057943 20058660 + processed_pseudogene processed_pseudogene MGP_AJ_T0006919.1 MGP_AJ_G0005692.1 mouse_genomes_project 17 24360974 24363629 + 1700022N22Rik lincRNA lincRNA MGP_AJ_T0099663.1 MGP_AJ_G0037629.1 mouse_genomes_project 17 57854309 57854421 + Gm25102 snRNA snRNA MGP_AJ_T0045701.1 MGP_AJ_G0023176.1 mouse_genomes_project 17 18400886 18401783 + MGP_AJ_P0045701 Vmn1r225 protein_coding protein_coding MGP_AJ_T0046771.1 MGP_AJ_G0023458.1 mouse_genomes_project 17 31077162 31094601 - MGP_AJ_P0046771 Akap8 protein_coding protein_coding MGP_AJ_T0048476.1 MGP_AJ_G0023960.1 mouse_genomes_project 17 71155240 71171864 - MGP_AJ_P0048476 Myl12b protein_coding protein_coding MGP_AJ_T0048477.1 MGP_AJ_G0023960.1 mouse_genomes_project 17 71155591 71157287 - Myl12b protein_coding retained_intron MGP_AJ_T0048478.1 MGP_AJ_G0023960.1 mouse_genomes_project 17 71158248 71171607 - Myl12b protein_coding retained_intron MGP_AJ_T0006988.1 MGP_AJ_G0005744.1 mouse_genomes_project 17 84229895 84233590 - C430042M11Rik lincRNA lincRNA MGP_AJ_T0046421.1 MGP_AJ_G0023381.1 mouse_genomes_project 17 26042197 26088786 - MGP_AJ_P0046421 Nudt3 protein_coding protein_coding MGP_AJ_T0046422.1 MGP_AJ_G0023381.1 mouse_genomes_project 17 26043893 26088285 - MGP_AJ_P0046422 Nudt3 protein_coding protein_coding MGP_AJ_T0046423.1 MGP_AJ_G0023381.1 mouse_genomes_project 17 26044024 26046629 - Nudt3 protein_coding retained_intron MGP_AJ_T0046424.1 MGP_AJ_G0023381.1 mouse_genomes_project 17 26044107 26088584 - MGP_AJ_P0046424 Nudt3 protein_coding protein_coding MGP_AJ_T0046425.1 MGP_AJ_G0023381.1 mouse_genomes_project 17 26044152 26087710 - Nudt3 protein_coding processed_transcript MGP_AJ_T0046426.1 MGP_AJ_G0023381.1 mouse_genomes_project 17 26044271 26074201 - Nudt3 protein_coding processed_transcript MGP_AJ_T0046427.1 MGP_AJ_G0023381.1 mouse_genomes_project 17 26045270 26088584 - MGP_AJ_P0046427 Nudt3 protein_coding protein_coding MGP_AJ_T0046428.1 MGP_AJ_G0023381.1 mouse_genomes_project 17 26045343 26088161 - MGP_AJ_P0046428 Nudt3 protein_coding protein_coding MGP_AJ_T0046429.1 MGP_AJ_G0023381.1 mouse_genomes_project 17 26059900 26088584 - Nudt3 protein_coding retained_intron MGP_AJ_T0006926.1 MGP_AJ_G0005699.1 mouse_genomes_project 17 27006867 27008958 + E230001N04Rik lincRNA lincRNA MGP_AJ_T0006927.1 MGP_AJ_G0005699.1 mouse_genomes_project 17 27006903 27008958 + E230001N04Rik lincRNA lincRNA MGP_AJ_T0006899.1 MGP_AJ_G0005676.1 mouse_genomes_project 17 6654467 6674535 - 6530411M01Rik lincRNA lincRNA MGP_AJ_T0045435.1 MGP_AJ_G0023085.1 mouse_genomes_project 17 3939287 3984469 - MGP_AJ_P0045435 Ezr protein_coding protein_coding MGP_AJ_T0045436.1 MGP_AJ_G0023085.1 mouse_genomes_project 17 3942083 3944070 - Ezr protein_coding processed_transcript MGP_AJ_T0006903.1 MGP_AJ_G0005679.1 mouse_genomes_project 17 11051088 11062675 + lincRNA lincRNA MGP_AJ_T0046528.1 MGP_AJ_G0023399.1 mouse_genomes_project 17 26880954 26969965 - MGP_AJ_P0046528 Fkbp5 protein_coding protein_coding MGP_AJ_T0046529.1 MGP_AJ_G0023399.1 mouse_genomes_project 17 26880956 27001129 - MGP_AJ_P0046529 Fkbp5 protein_coding protein_coding MGP_AJ_T0046530.1 MGP_AJ_G0023399.1 mouse_genomes_project 17 26880964 27001129 - MGP_AJ_P0046530 Fkbp5 protein_coding protein_coding MGP_AJ_T0046531.1 MGP_AJ_G0023399.1 mouse_genomes_project 17 26884557 26911408 - Fkbp5 protein_coding processed_transcript MGP_AJ_T0046532.1 MGP_AJ_G0023399.1 mouse_genomes_project 17 26898733 26924811 - MGP_AJ_P0046532 Fkbp5 protein_coding protein_coding MGP_AJ_T0046533.1 MGP_AJ_G0023399.1 mouse_genomes_project 17 26981129 26991158 - Fkbp5 protein_coding retained_intron MGP_AJ_T0102441.1 MGP_AJ_G0040183.1 mouse_genomes_project 17 36657684 36659678 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0006922.1 MGP_AJ_G0005695.1 mouse_genomes_project 17 25645204 25647244 + Gm26724 lincRNA lincRNA MGP_AJ_T0011434.1 MGP_AJ_G0009556.1 mouse_genomes_project 17 76402049 76402157 - Gm26124 misc_RNA misc_RNA MGP_AJ_T0045616.1 MGP_AJ_G0023138.1 mouse_genomes_project 17 12956442 12965574 - MGP_AJ_P0045616 Dll1 protein_coding protein_coding MGP_AJ_T0045617.1 MGP_AJ_G0023138.1 mouse_genomes_project 17 12956527 12964838 - MGP_AJ_P0045617 Dll1 protein_coding unknown_likely_coding MGP_AJ_T0045618.1 MGP_AJ_G0023138.1 mouse_genomes_project 17 12956613 12957479 - Dll1 protein_coding retained_intron MGP_AJ_T0045619.1 MGP_AJ_G0023138.1 mouse_genomes_project 17 12959346 12961429 - Dll1 protein_coding processed_transcript MGP_AJ_T0045620.1 MGP_AJ_G0023138.1 mouse_genomes_project 17 12959699 12963670 - Dll1 protein_coding processed_transcript MGP_AJ_T0045621.1 MGP_AJ_G0023138.1 mouse_genomes_project 17 12961221 12964698 - Dll1 protein_coding retained_intron MGP_AJ_T0045622.1 MGP_AJ_G0023138.1 mouse_genomes_project 17 12964391 12966470 - Dll1 protein_coding processed_transcript MGP_AJ_T0003726.1 MGP_AJ_G0003354.1 mouse_genomes_project 17 24947584 24954873 - 1700049J03Rik antisense antisense MGP_AJ_T0006983.1 MGP_AJ_G0005739.1 mouse_genomes_project 17 71059964 71607602 + lincRNA lincRNA MGP_AJ_T0045916.1 MGP_AJ_G0023258.1 mouse_genomes_project 17 22780033 22795723 + MGP_AJ_P0045916 Eci1 protein_coding protein_coding MGP_AJ_T0102369.1 MGP_AJ_G0040111.1 mouse_genomes_project 17 16178825 16180105 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0010203.1 MGP_AJ_G0008325.1 mouse_genomes_project 17 34165168 34165246 + Mir6973a miRNA miRNA MGP_AJ_T0046181.1 MGP_AJ_G0023323.1 mouse_genomes_project 17 24120480 24126194 - MGP_AJ_P0046181 Msln protein_coding protein_coding MGP_AJ_T0013246.1 MGP_AJ_G0011341.1 mouse_genomes_project 17 35618866 35619234 - processed_pseudogene processed_pseudogene MGP_AJ_T0045383.1 MGP_AJ_G0023068.1 mouse_genomes_project 17 161665 263969 + MGP_AJ_P0045383 Scaf8 protein_coding protein_coding MGP_AJ_T0045384.1 MGP_AJ_G0023068.1 mouse_genomes_project 17 162082 263978 + MGP_AJ_P0045384 Scaf8 protein_coding unknown_likely_coding MGP_AJ_T0010178.1 MGP_AJ_G0008300.1 mouse_genomes_project 17 23616156 23616244 - Mir3547 miRNA miRNA MGP_AJ_T0048046.1 MGP_AJ_G0023815.1 mouse_genomes_project 17 47641041 47651517 + MGP_AJ_P0048046 Frs3 protein_coding protein_coding MGP_AJ_T0048049.1 MGP_AJ_G0023815.1 mouse_genomes_project 17 47647206 47656254 + MGP_AJ_P0048049 Frs3 protein_coding protein_coding MGP_AJ_T0048050.1 MGP_AJ_G0023815.1 mouse_genomes_project 17 47647233 47649678 + Frs3 protein_coding processed_transcript MGP_AJ_T0048051.1 MGP_AJ_G0023815.1 mouse_genomes_project 17 47651524 47652841 + Frs3 protein_coding processed_transcript MGP_AJ_T0048052.1 MGP_AJ_G0023815.1 mouse_genomes_project 17 47654030 47656252 + Frs3 protein_coding processed_transcript MGP_AJ_T0048759.1 MGP_AJ_G0024067.1 mouse_genomes_project 17 88480350 88495897 + MGP_AJ_P0048759 Msh6 protein_coding protein_coding MGP_AJ_T0046911.1 MGP_AJ_G0023496.1 mouse_genomes_project 17 32589429 32601817 + MGP_AJ_P0046911 Kank3 protein_coding protein_coding MGP_AJ_T0046912.1 MGP_AJ_G0023496.1 mouse_genomes_project 17 32589432 32601816 + MGP_AJ_P0046912 Kank3 protein_coding protein_coding MGP_AJ_T0046913.1 MGP_AJ_G0023496.1 mouse_genomes_project 17 32589432 32601813 + MGP_AJ_P0046913 Kank3 protein_coding protein_coding MGP_AJ_T0046914.1 MGP_AJ_G0023496.1 mouse_genomes_project 17 32589438 32601057 + Kank3 protein_coding retained_intron MGP_AJ_T0046916.1 MGP_AJ_G0023496.1 mouse_genomes_project 17 32600728 32601174 + Kank3 protein_coding retained_intron MGP_AJ_T0046917.1 MGP_AJ_G0023496.1 mouse_genomes_project 17 32601041 32601816 + MGP_AJ_P0046917 Kank3 protein_coding protein_coding MGP_AJ_T0013304.1 MGP_AJ_G0011399.1 mouse_genomes_project 17 92198597 92199824 + processed_pseudogene processed_pseudogene MGP_AJ_T0099665.1 MGP_AJ_G0037631.1 mouse_genomes_project 17 60585518 60585681 + Gm23447 snRNA snRNA MGP_AJ_T0046539.1 MGP_AJ_G0023404.1 mouse_genomes_project 17 27073093 27111613 - MGP_AJ_P0046539 Srpk1 protein_coding protein_coding MGP_AJ_T0046540.1 MGP_AJ_G0023404.1 mouse_genomes_project 17 27074954 27095455 - MGP_AJ_P0046540 Srpk1 protein_coding nonsense_mediated_decay MGP_AJ_T0046541.1 MGP_AJ_G0023404.1 mouse_genomes_project 17 27075352 27077789 - Srpk1 protein_coding retained_intron MGP_AJ_T0046542.1 MGP_AJ_G0023404.1 mouse_genomes_project 17 27080831 27089473 - Srpk1 protein_coding retained_intron MGP_AJ_T0046543.1 MGP_AJ_G0023404.1 mouse_genomes_project 17 27088922 27089850 - Srpk1 protein_coding retained_intron MGP_AJ_T0046544.1 MGP_AJ_G0023404.1 mouse_genomes_project 17 27091133 27111543 - Srpk1 protein_coding retained_intron MGP_AJ_T0046545.1 MGP_AJ_G0023404.1 mouse_genomes_project 17 27109234 27111564 - MGP_AJ_P0046545 Srpk1 protein_coding protein_coding MGP_AJ_T0046074.1 MGP_AJ_G0023297.1 mouse_genomes_project 17 23468262 23484772 - Telo2 protein_coding retained_intron MGP_AJ_T0046075.1 MGP_AJ_G0023297.1 mouse_genomes_project 17 23468262 23484832 - MGP_AJ_P0046075 Telo2 protein_coding protein_coding MGP_AJ_T0046076.1 MGP_AJ_G0023297.1 mouse_genomes_project 17 23468269 23484770 - MGP_AJ_P0046076 Telo2 protein_coding protein_coding MGP_AJ_T0046077.1 MGP_AJ_G0023297.1 mouse_genomes_project 17 23468309 23472355 - Telo2 protein_coding processed_transcript MGP_AJ_T0046078.1 MGP_AJ_G0023297.1 mouse_genomes_project 17 23468317 23475533 - Telo2 protein_coding processed_transcript MGP_AJ_T0046079.1 MGP_AJ_G0023297.1 mouse_genomes_project 17 23468517 23470138 - Telo2 protein_coding processed_transcript MGP_AJ_T0046080.1 MGP_AJ_G0023297.1 mouse_genomes_project 17 23469468 23476848 - Telo2 protein_coding retained_intron MGP_AJ_T0046081.1 MGP_AJ_G0023297.1 mouse_genomes_project 17 23479518 23484057 - Telo2 protein_coding processed_transcript MGP_AJ_T0046082.1 MGP_AJ_G0023297.1 mouse_genomes_project 17 23479808 23482514 - Telo2 protein_coding processed_transcript MGP_AJ_T0046083.1 MGP_AJ_G0023297.1 mouse_genomes_project 17 23482067 23484177 - Telo2 protein_coding processed_transcript MGP_AJ_T0046084.1 MGP_AJ_G0023297.1 mouse_genomes_project 17 23483002 23484819 - Telo2 protein_coding retained_intron MGP_AJ_T0006960.1 MGP_AJ_G0005727.1 mouse_genomes_project 17 47884520 47885628 + Gm15556 lincRNA lincRNA MGP_AJ_T0045725.1 MGP_AJ_G0023194.1 mouse_genomes_project 17 19379759 19393865 + MGP_AJ_P0045725 Zfp677 protein_coding protein_coding MGP_AJ_T0045726.1 MGP_AJ_G0023194.1 mouse_genomes_project 17 19379759 19393862 + MGP_AJ_P0045726 Zfp677 protein_coding protein_coding MGP_AJ_T0047597.1 MGP_AJ_G0023641.1 mouse_genomes_project 17 36039954 36046974 - MGP_AJ_P0047597 Trim15 protein_coding protein_coding MGP_AJ_T0047598.1 MGP_AJ_G0023641.1 mouse_genomes_project 17 36039956 36046997 - MGP_AJ_P0047598 Trim15 protein_coding protein_coding MGP_AJ_T0047599.1 MGP_AJ_G0023641.1 mouse_genomes_project 17 36040577 36046533 - MGP_AJ_P0047599 Trim15 protein_coding nonsense_mediated_decay MGP_AJ_T0099660.1 MGP_AJ_G0037626.1 mouse_genomes_project 17 49292362 49292523 + Gm22978 snRNA snRNA MGP_AJ_T0101746.1 MGP_AJ_G0039677.1 mouse_genomes_project 17 26554830 26556430 - transcribed_processed_pseudogene processed_transcript MGP_AJ_T0101747.1 MGP_AJ_G0039677.1 mouse_genomes_project 17 26555194 26556124 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0006929.1 MGP_AJ_G0005701.1 mouse_genomes_project 17 27534446 27535552 + Gm16195 lincRNA lincRNA MGP_AJ_T0102110.1 MGP_AJ_G0039873.1 mouse_genomes_project 17 40704542 40718648 + unitary_pseudogene unitary_pseudogene MGP_AJ_T0048040.1 MGP_AJ_G0023813.1 mouse_genomes_project 17 47638749 47646464 - MGP_AJ_P0048040 protein_coding nonsense_mediated_decay MGP_AJ_T0017545.1 MGP_AJ_G0015313.1 mouse_genomes_project 17 12651227 12665143 + Gm28869 processed_transcript processed_transcript MGP_AJ_T0045988.1 MGP_AJ_G0023277.1 mouse_genomes_project 17 23080839 23083057 - MGP_AJ_P0045988 Rnf151 protein_coding protein_coding MGP_AJ_T0048010.1 MGP_AJ_G0023805.1 mouse_genomes_project 17 47378924 47412627 + MGP_AJ_P0048010 AI661453 protein_coding protein_coding MGP_AJ_T0048011.1 MGP_AJ_G0023805.1 mouse_genomes_project 17 47379114 47413121 + MGP_AJ_P0048011 AI661453 protein_coding protein_coding MGP_AJ_T0048292.1 MGP_AJ_G0023890.1 mouse_genomes_project 17 56726731 56739304 - MGP_AJ_P0048292 Lonp1 protein_coding protein_coding MGP_AJ_T0017557.1 MGP_AJ_G0015318.1 mouse_genomes_project 17 24291735 24310002 + Gm16278 processed_transcript processed_transcript MGP_AJ_T0048715.1 MGP_AJ_G0024051.1 mouse_genomes_project 17 86930601 86938140 - MGP_AJ_P0048715 Gm10309 protein_coding protein_coding MGP_AJ_T0013286.1 MGP_AJ_G0011381.1 mouse_genomes_project 17 70549942 70550386 - processed_pseudogene processed_pseudogene MGP_AJ_T0098420.1 MGP_AJ_G0036404.1 mouse_genomes_project 17 78506957 78507315 - pseudogene pseudogene MGP_AJ_T0003702.1 MGP_AJ_G0003341.1 mouse_genomes_project 17 2462337 2491234 + Gm29050 antisense antisense MGP_AJ_T0003703.1 MGP_AJ_G0003341.1 mouse_genomes_project 17 2477957 2493490 + Gm29050 antisense antisense MGP_AJ_T0048350.1 MGP_AJ_G0023922.1 mouse_genomes_project 17 57633716 57668902 - MGP_AJ_P0048350 Vmn2r120 protein_coding protein_coding MGP_AJ_T0046197.1 MGP_AJ_G0023327.1 mouse_genomes_project 17 24163306 24165083 - MGP_AJ_P0046197 Fam173a protein_coding protein_coding MGP_AJ_T0047685.1 MGP_AJ_G0023681.1 mouse_genomes_project 17 36946689 36951846 + MGP_AJ_P0047685 protein_coding protein_coding MGP_AJ_T0045806.1 MGP_AJ_G0023225.1 mouse_genomes_project 17 21948221 21949656 - MGP_AJ_P0045806 Cldn9 protein_coding protein_coding MGP_AJ_T0000986.1 MGP_AJ_G0000917.1 mouse_genomes_project 17 51792988 51797767 - TEC TEC MGP_AJ_T0048199.1 MGP_AJ_G0023856.1 mouse_genomes_project 17 55658308 55688899 - MGP_AJ_P0048199 Vmn2r118 protein_coding protein_coding MGP_AJ_T0048395.1 MGP_AJ_G0023939.1 mouse_genomes_project 17 65964796 66002603 - MGP_AJ_P0048395 Ralbp1 protein_coding protein_coding MGP_AJ_T0048396.1 MGP_AJ_G0023939.1 mouse_genomes_project 17 65964796 66001771 - MGP_AJ_P0048396 Ralbp1 protein_coding protein_coding MGP_AJ_T0010191.1 MGP_AJ_G0008313.1 mouse_genomes_project 17 27009942 27010068 + Gm25195 miRNA miRNA MGP_AJ_T0006966.1 MGP_AJ_G0005729.1 mouse_genomes_project 17 50248019 50255142 + AY702103 lincRNA lincRNA MGP_AJ_T0006967.1 MGP_AJ_G0005729.1 mouse_genomes_project 17 50248215 50250336 + AY702103 lincRNA lincRNA MGP_AJ_T0048139.1 MGP_AJ_G0023837.1 mouse_genomes_project 17 49428464 49439911 + MGP_AJ_P0048139 Mocs1 protein_coding protein_coding MGP_AJ_T0048140.1 MGP_AJ_G0023837.1 mouse_genomes_project 17 49428544 49449158 + MGP_AJ_P0048140 Mocs1 protein_coding nonsense_mediated_decay MGP_AJ_T0048141.1 MGP_AJ_G0023837.1 mouse_genomes_project 17 49428544 49449158 + MGP_AJ_P0048141 Mocs1 protein_coding nonsense_mediated_decay MGP_AJ_T0048142.1 MGP_AJ_G0023837.1 mouse_genomes_project 17 49428544 49449158 + MGP_AJ_P0048142 Mocs1 protein_coding protein_coding MGP_AJ_T0048143.1 MGP_AJ_G0023837.1 mouse_genomes_project 17 49433302 49435627 + Mocs1 protein_coding processed_transcript MGP_AJ_T0048144.1 MGP_AJ_G0023837.1 mouse_genomes_project 17 49444314 49448636 + MGP_AJ_P0048144 Mocs1 protein_coding protein_coding MGP_AJ_T0048145.1 MGP_AJ_G0023837.1 mouse_genomes_project 17 49446766 49449782 + MGP_AJ_P0048145 Mocs1 protein_coding protein_coding MGP_AJ_T0047982.1 MGP_AJ_G0023792.1 mouse_genomes_project 17 46709179 46717911 - MGP_AJ_P0047982 Rpl7l1 protein_coding protein_coding MGP_AJ_T0010224.1 MGP_AJ_G0008346.1 mouse_genomes_project 17 78632531 78632617 + Gm25069 miRNA miRNA MGP_AJ_T0045658.1 MGP_AJ_G0023148.1 mouse_genomes_project 17 15351551 15384168 + MGP_AJ_P0045658 Vmn2r90 protein_coding protein_coding MGP_AJ_T0048012.1 MGP_AJ_G0023806.1 mouse_genomes_project 17 47433573 47448635 - MGP_AJ_P0048012 Taf8 protein_coding protein_coding MGP_AJ_T0102378.1 MGP_AJ_G0040120.1 mouse_genomes_project 17 17715399 17752292 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0048610.1 MGP_AJ_G0024004.1 mouse_genomes_project 17 79276335 79287387 + MGP_AJ_P0048610 Ndufaf7 protein_coding protein_coding MGP_AJ_T0048553.1 MGP_AJ_G0023988.1 mouse_genomes_project 17 74816303 74993622 + MGP_AJ_P0048553 Birc6 protein_coding protein_coding MGP_AJ_T0048554.1 MGP_AJ_G0023988.1 mouse_genomes_project 17 74816476 74992652 + MGP_AJ_P0048554 Birc6 protein_coding protein_coding MGP_AJ_T0048555.1 MGP_AJ_G0023988.1 mouse_genomes_project 17 74816476 74992652 + MGP_AJ_P0048555 Birc6 protein_coding protein_coding MGP_AJ_T0048556.1 MGP_AJ_G0023988.1 mouse_genomes_project 17 74816476 74992652 + MGP_AJ_P0048556 Birc6 protein_coding protein_coding MGP_AJ_T0048557.1 MGP_AJ_G0023988.1 mouse_genomes_project 17 74816530 74855099 + Birc6 protein_coding retained_intron MGP_AJ_T0048558.1 MGP_AJ_G0023988.1 mouse_genomes_project 17 74816560 74992652 + MGP_AJ_P0048558 Birc6 protein_coding protein_coding MGP_AJ_T0048559.1 MGP_AJ_G0023988.1 mouse_genomes_project 17 74834115 74837025 + Birc6 protein_coding retained_intron MGP_AJ_T0048560.1 MGP_AJ_G0023988.1 mouse_genomes_project 17 74845042 74849076 + Birc6 protein_coding retained_intron MGP_AJ_T0048561.1 MGP_AJ_G0023988.1 mouse_genomes_project 17 74845050 74850795 + Birc6 protein_coding retained_intron MGP_AJ_T0048562.1 MGP_AJ_G0023988.1 mouse_genomes_project 17 74848703 74850942 + Birc6 protein_coding retained_intron MGP_AJ_T0048563.1 MGP_AJ_G0023988.1 mouse_genomes_project 17 74849032 74854041 + Birc6 protein_coding retained_intron MGP_AJ_T0048564.1 MGP_AJ_G0023988.1 mouse_genomes_project 17 74887625 74909205 + MGP_AJ_P0048564 Birc6 protein_coding protein_coding MGP_AJ_T0048565.1 MGP_AJ_G0023988.1 mouse_genomes_project 17 74892620 74895833 + MGP_AJ_P0048565 Birc6 protein_coding protein_coding MGP_AJ_T0048566.1 MGP_AJ_G0023988.1 mouse_genomes_project 17 74900525 74909204 + MGP_AJ_P0048566 Birc6 protein_coding protein_coding MGP_AJ_T0048567.1 MGP_AJ_G0023988.1 mouse_genomes_project 17 74900894 74929934 + Birc6 protein_coding retained_intron MGP_AJ_T0048568.1 MGP_AJ_G0023988.1 mouse_genomes_project 17 74900924 74908013 + MGP_AJ_P0048568 Birc6 protein_coding protein_coding MGP_AJ_T0048569.1 MGP_AJ_G0023988.1 mouse_genomes_project 17 74901672 74904974 + Birc6 protein_coding retained_intron MGP_AJ_T0048570.1 MGP_AJ_G0023988.1 mouse_genomes_project 17 74907644 74909204 + Birc6 protein_coding retained_intron MGP_AJ_T0048571.1 MGP_AJ_G0023988.1 mouse_genomes_project 17 74941906 74948602 + MGP_AJ_P0048571 Birc6 protein_coding nonsense_mediated_decay MGP_AJ_T0048572.1 MGP_AJ_G0023988.1 mouse_genomes_project 17 74941916 74943740 + Birc6 protein_coding processed_transcript MGP_AJ_T0048573.1 MGP_AJ_G0023988.1 mouse_genomes_project 17 74943663 74993613 + MGP_AJ_P0048573 Birc6 protein_coding nonsense_mediated_decay MGP_AJ_T0048574.1 MGP_AJ_G0023988.1 mouse_genomes_project 17 74948483 74958146 + Birc6 protein_coding retained_intron MGP_AJ_T0048575.1 MGP_AJ_G0023988.1 mouse_genomes_project 17 74959539 74971741 + Birc6 protein_coding retained_intron MGP_AJ_T0048576.1 MGP_AJ_G0023988.1 mouse_genomes_project 17 74987624 74993335 + Birc6 protein_coding retained_intron MGP_AJ_T0048027.1 MGP_AJ_G0023808.1 mouse_genomes_project 17 47550050 47562224 - MGP_AJ_P0048027 Bysl protein_coding protein_coding MGP_AJ_T0003786.1 MGP_AJ_G0003399.1 mouse_genomes_project 17 71008053 71009434 + Gm20703 antisense antisense MGP_AJ_T0045736.1 MGP_AJ_G0023202.1 mouse_genomes_project 17 19716342 19734235 + MGP_AJ_P0045736 Zfp760 protein_coding protein_coding MGP_AJ_T0048705.1 MGP_AJ_G0024047.1 mouse_genomes_project 17 86021841 86035724 + MGP_AJ_P0048705 Six3 protein_coding protein_coding MGP_AJ_T0048706.1 MGP_AJ_G0024047.1 mouse_genomes_project 17 86031362 86036692 + MGP_AJ_P0048706 Six3 protein_coding protein_coding MGP_AJ_T0048707.1 MGP_AJ_G0024047.1 mouse_genomes_project 17 86031539 86039819 + MGP_AJ_P0048707 Six3 protein_coding protein_coding MGP_AJ_T0013213.1 MGP_AJ_G0011308.1 mouse_genomes_project 17 10316308 10317053 + processed_pseudogene processed_pseudogene MGP_AJ_T0100939.1 MGP_AJ_G0038905.1 mouse_genomes_project 17 87497824 87497956 - Gm24648 snoRNA snoRNA MGP_AJ_T0048760.1 MGP_AJ_G0024068.1 mouse_genomes_project 17 88495920 88572099 - MGP_AJ_P0048760 Fbxo11 protein_coding protein_coding MGP_AJ_T0048761.1 MGP_AJ_G0024068.1 mouse_genomes_project 17 88496431 88514304 - MGP_AJ_P0048761 Fbxo11 protein_coding nonsense_mediated_decay MGP_AJ_T0048762.1 MGP_AJ_G0024068.1 mouse_genomes_project 17 88498226 88506055 - Fbxo11 protein_coding retained_intron MGP_AJ_T0045764.1 MGP_AJ_G0023212.1 mouse_genomes_project 17 20887854 20888025 + MGP_AJ_P0045764 Gm9805 protein_coding protein_coding MGP_AJ_T0046812.1 MGP_AJ_G0023468.1 mouse_genomes_project 17 31478231 31496127 + MGP_AJ_P0046812 Cyp4f15 protein_coding protein_coding MGP_AJ_T0046813.1 MGP_AJ_G0023468.1 mouse_genomes_project 17 31478272 31482939 + Cyp4f15 protein_coding retained_intron MGP_AJ_T0046814.1 MGP_AJ_G0023468.1 mouse_genomes_project 17 31478275 31490604 + Cyp4f15 protein_coding processed_transcript MGP_AJ_T0046815.1 MGP_AJ_G0023468.1 mouse_genomes_project 17 31478283 31496127 + MGP_AJ_P0046815 Cyp4f15 protein_coding protein_coding MGP_AJ_T0046816.1 MGP_AJ_G0023468.1 mouse_genomes_project 17 31478656 31495735 + MGP_AJ_P0046816 Cyp4f15 protein_coding unknown_likely_coding MGP_AJ_T0010186.1 MGP_AJ_G0008308.1 mouse_genomes_project 17 25531961 25532028 + Mir7677 miRNA miRNA MGP_AJ_T0048341.1 MGP_AJ_G0023918.1 mouse_genomes_project 17 57365936 57378665 - MGP_AJ_P0048341 Gpr108 protein_coding protein_coding MGP_AJ_T0011432.1 MGP_AJ_G0009554.1 mouse_genomes_project 17 67713904 67714181 + Gm22277 misc_RNA misc_RNA MGP_AJ_T0100920.1 MGP_AJ_G0038886.1 mouse_genomes_project 17 28575300 28575408 - Gm22327 snoRNA snoRNA MGP_AJ_T0048244.1 MGP_AJ_G0023881.1 mouse_genomes_project 17 56392397 56398571 - MGP_AJ_P0048244 Arrdc5 protein_coding protein_coding MGP_AJ_T0048293.1 MGP_AJ_G0023891.1 mouse_genomes_project 17 56740543 56776762 + MGP_AJ_P0048293 Catsperd protein_coding protein_coding MGP_AJ_T0048743.1 MGP_AJ_G0024061.1 mouse_genomes_project 17 87850717 87894564 - MGP_AJ_P0048743 1700011E24Rik protein_coding protein_coding MGP_AJ_T0048744.1 MGP_AJ_G0024061.1 mouse_genomes_project 17 87850722 87894510 - MGP_AJ_P0048744 1700011E24Rik protein_coding protein_coding MGP_AJ_T0048745.1 MGP_AJ_G0024061.1 mouse_genomes_project 17 87878590 87894531 - MGP_AJ_P0048745 1700011E24Rik protein_coding protein_coding MGP_AJ_T0048746.1 MGP_AJ_G0024061.1 mouse_genomes_project 17 87884873 87894458 - 1700011E24Rik protein_coding processed_transcript MGP_AJ_T0048747.1 MGP_AJ_G0024061.1 mouse_genomes_project 17 87884883 87894458 - 1700011E24Rik protein_coding processed_transcript MGP_AJ_T0048240.1 MGP_AJ_G0023877.1 mouse_genomes_project 17 56276542 56310217 - MGP_AJ_P0048240 Dpp9 protein_coding protein_coding MGP_AJ_T0047178.1 MGP_AJ_G0023551.1 mouse_genomes_project 17 33794232 33807232 - MGP_AJ_P0047178 Stk19 protein_coding protein_coding MGP_AJ_T0047179.1 MGP_AJ_G0023551.1 mouse_genomes_project 17 33794233 33807154 - MGP_AJ_P0047179 Stk19 protein_coding nonsense_mediated_decay MGP_AJ_T0047180.1 MGP_AJ_G0023551.1 mouse_genomes_project 17 33794234 33796691 - Stk19 protein_coding retained_intron MGP_AJ_T0047181.1 MGP_AJ_G0023551.1 mouse_genomes_project 17 33794321 33806734 - MGP_AJ_P0047181 Stk19 protein_coding protein_coding MGP_AJ_T0047182.1 MGP_AJ_G0023551.1 mouse_genomes_project 17 33794428 33802765 - MGP_AJ_P0047182 Stk19 protein_coding nonsense_mediated_decay MGP_AJ_T0047183.1 MGP_AJ_G0023551.1 mouse_genomes_project 17 33794463 33796010 - Stk19 protein_coding processed_transcript MGP_AJ_T0047184.1 MGP_AJ_G0023551.1 mouse_genomes_project 17 33802038 33807214 - Stk19 protein_coding retained_intron MGP_AJ_T0047185.1 MGP_AJ_G0023551.1 mouse_genomes_project 17 33802724 33807041 - Stk19 protein_coding retained_intron MGP_AJ_T0047950.1 MGP_AJ_G0023778.1 mouse_genomes_project 17 46468882 46478196 - MGP_AJ_P0047950 Srf protein_coding protein_coding MGP_AJ_T0048132.1 MGP_AJ_G0023835.1 mouse_genomes_project 17 48438602 48453081 + MGP_AJ_P0048132 Unc5cl protein_coding protein_coding MGP_AJ_T0048133.1 MGP_AJ_G0023835.1 mouse_genomes_project 17 48446030 48453075 + MGP_AJ_P0048133 Unc5cl protein_coding nonsense_mediated_decay MGP_AJ_T0048134.1 MGP_AJ_G0023835.1 mouse_genomes_project 17 48446055 48529177 + MGP_AJ_P0048134 Unc5cl protein_coding nonsense_mediated_decay MGP_AJ_T0048135.1 MGP_AJ_G0023835.1 mouse_genomes_project 17 48446061 48449428 + MGP_AJ_P0048135 Unc5cl protein_coding protein_coding MGP_AJ_T0048136.1 MGP_AJ_G0023835.1 mouse_genomes_project 17 48446079 48453073 + MGP_AJ_P0048136 Unc5cl protein_coding nonsense_mediated_decay MGP_AJ_T0048137.1 MGP_AJ_G0023835.1 mouse_genomes_project 17 48446099 48529070 + MGP_AJ_P0048137 Unc5cl protein_coding nonsense_mediated_decay MGP_AJ_T0048295.1 MGP_AJ_G0023893.1 mouse_genomes_project 17 56829235 56833002 - MGP_AJ_P0048295 Vmac protein_coding protein_coding MGP_AJ_T0048296.1 MGP_AJ_G0023893.1 mouse_genomes_project 17 56829235 56832224 - MGP_AJ_P0048296 Vmac protein_coding protein_coding MGP_AJ_T0010219.1 MGP_AJ_G0008341.1 mouse_genomes_project 17 64439506 64439596 - Gm24194 miRNA miRNA MGP_AJ_T0048489.1 MGP_AJ_G0023963.1 mouse_genomes_project 17 71381710 71442529 + Lpin2 protein_coding retained_intron MGP_AJ_T0048490.1 MGP_AJ_G0023963.1 mouse_genomes_project 17 71382706 71439704 + MGP_AJ_P0048490 Lpin2 protein_coding protein_coding MGP_AJ_T0048491.1 MGP_AJ_G0023963.1 mouse_genomes_project 17 71382873 71430295 + Lpin2 protein_coding retained_intron MGP_AJ_T0048492.1 MGP_AJ_G0023963.1 mouse_genomes_project 17 71412434 71438904 + MGP_AJ_P0048492 Lpin2 protein_coding nonsense_mediated_decay MGP_AJ_T0048493.1 MGP_AJ_G0023963.1 mouse_genomes_project 17 71412556 71457305 + MGP_AJ_P0048493 Lpin2 protein_coding protein_coding MGP_AJ_T0048494.1 MGP_AJ_G0023963.1 mouse_genomes_project 17 71438831 71445509 + Lpin2 protein_coding retained_intron MGP_AJ_T0048495.1 MGP_AJ_G0023963.1 mouse_genomes_project 17 71446087 71446826 + Lpin2 protein_coding retained_intron MGP_AJ_T0048496.1 MGP_AJ_G0023963.1 mouse_genomes_project 17 71446097 71453913 + MGP_AJ_P0048496 Lpin2 protein_coding nonsense_mediated_decay MGP_AJ_T0048497.1 MGP_AJ_G0023963.1 mouse_genomes_project 17 71448063 71452288 + Lpin2 protein_coding retained_intron MGP_AJ_T0048498.1 MGP_AJ_G0023963.1 mouse_genomes_project 17 71448164 71450941 + Lpin2 protein_coding retained_intron MGP_AJ_T0048499.1 MGP_AJ_G0023963.1 mouse_genomes_project 17 71449857 71453367 + Lpin2 protein_coding retained_intron MGP_AJ_T0048500.1 MGP_AJ_G0023963.1 mouse_genomes_project 17 71453490 71454795 + Lpin2 protein_coding retained_intron MGP_AJ_T0010193.1 MGP_AJ_G0008315.1 mouse_genomes_project 17 28166242 28166305 + Mir7667 miRNA miRNA MGP_AJ_T0047973.1 MGP_AJ_G0023788.1 mouse_genomes_project 17 46659221 46660359 - Gnmt protein_coding retained_intron MGP_AJ_T0047974.1 MGP_AJ_G0023788.1 mouse_genomes_project 17 46659221 46662687 - MGP_AJ_P0047974 Gnmt protein_coding protein_coding MGP_AJ_T0048124.1 MGP_AJ_G0023832.1 mouse_genomes_project 17 48389424 48396314 + MGP_AJ_P0048124 Oard1 protein_coding protein_coding MGP_AJ_T0048125.1 MGP_AJ_G0023832.1 mouse_genomes_project 17 48389490 48396326 + MGP_AJ_P0048125 Oard1 protein_coding protein_coding MGP_AJ_T0047850.1 MGP_AJ_G0023756.1 mouse_genomes_project 17 45591431 45603801 + MGP_AJ_P0047850 Mrpl14 protein_coding protein_coding MGP_AJ_T0047851.1 MGP_AJ_G0023756.1 mouse_genomes_project 17 45591466 45603484 + Mrpl14 protein_coding processed_transcript MGP_AJ_T0047852.1 MGP_AJ_G0023756.1 mouse_genomes_project 17 45600618 45603706 + Mrpl14 protein_coding processed_transcript MGP_AJ_T0013277.1 MGP_AJ_G0011372.1 mouse_genomes_project 17 53997680 53998064 - processed_pseudogene processed_pseudogene MGP_AJ_T0099641.1 MGP_AJ_G0037607.1 mouse_genomes_project 17 11256537 11256644 + Gm24867 snRNA snRNA MGP_AJ_T0048053.1 MGP_AJ_G0023816.1 mouse_genomes_project 17 47679182 47686859 + MGP_AJ_P0048053 Pgc protein_coding protein_coding MGP_AJ_T0048054.1 MGP_AJ_G0023816.1 mouse_genomes_project 17 47679184 47684628 + MGP_AJ_P0048054 Pgc protein_coding protein_coding MGP_AJ_T0046971.1 MGP_AJ_G0023506.1 mouse_genomes_project 17 32721290 32722813 - MGP_AJ_P0046971 Pfdn6 protein_coding protein_coding MGP_AJ_T0046972.1 MGP_AJ_G0023506.1 mouse_genomes_project 17 32721379 32722800 - MGP_AJ_P0046972 Pfdn6 protein_coding protein_coding MGP_AJ_T0046973.1 MGP_AJ_G0023506.1 mouse_genomes_project 17 32721388 32722795 - MGP_AJ_P0046973 Pfdn6 protein_coding protein_coding MGP_AJ_T0046974.1 MGP_AJ_G0023506.1 mouse_genomes_project 17 32721392 32722774 - MGP_AJ_P0046974 Pfdn6 protein_coding protein_coding MGP_AJ_T0046975.1 MGP_AJ_G0023506.1 mouse_genomes_project 17 32721415 32722800 - MGP_AJ_P0046975 Pfdn6 protein_coding protein_coding MGP_AJ_T0046976.1 MGP_AJ_G0023506.1 mouse_genomes_project 17 32721827 32722289 - Pfdn6 protein_coding retained_intron MGP_AJ_T0048663.1 MGP_AJ_G0024031.1 mouse_genomes_project 17 83709037 83834996 + MGP_AJ_P0048663 Eml4 protein_coding protein_coding MGP_AJ_T0048664.1 MGP_AJ_G0024031.1 mouse_genomes_project 17 83709037 83834996 + MGP_AJ_P0048664 Eml4 protein_coding protein_coding MGP_AJ_T0048665.1 MGP_AJ_G0024031.1 mouse_genomes_project 17 83709037 83834996 + MGP_AJ_P0048665 Eml4 protein_coding protein_coding MGP_AJ_T0046342.1 MGP_AJ_G0023357.1 mouse_genomes_project 17 24681900 24682683 - MGP_AJ_P0046342 protein_coding protein_coding MGP_AJ_T0046344.1 MGP_AJ_G0023357.1 mouse_genomes_project 17 24681941 24682547 - protein_coding retained_intron MGP_AJ_T0046621.1 MGP_AJ_G0023421.1 mouse_genomes_project 17 27877662 27897446 - MGP_AJ_P0046621 Mtch1 protein_coding protein_coding MGP_AJ_T0046622.1 MGP_AJ_G0023421.1 mouse_genomes_project 17 27877666 27897446 - MGP_AJ_P0046622 Mtch1 protein_coding protein_coding MGP_AJ_T0046623.1 MGP_AJ_G0023421.1 mouse_genomes_project 17 27877704 27879596 - Mtch1 protein_coding processed_transcript MGP_AJ_T0046624.1 MGP_AJ_G0023421.1 mouse_genomes_project 17 27879309 27879698 - Mtch1 protein_coding processed_transcript MGP_AJ_T0046625.1 MGP_AJ_G0023421.1 mouse_genomes_project 17 27885119 27889991 - Mtch1 protein_coding retained_intron MGP_AJ_T0046626.1 MGP_AJ_G0023421.1 mouse_genomes_project 17 27889369 27896713 - MGP_AJ_P0046626 Mtch1 protein_coding protein_coding MGP_AJ_T0046627.1 MGP_AJ_G0023421.1 mouse_genomes_project 17 27890326 27892459 - Mtch1 protein_coding retained_intron MGP_AJ_T0046571.1 MGP_AJ_G0023410.1 mouse_genomes_project 17 27403404 27423701 - MGP_AJ_P0046571 4930539E08Rik protein_coding unknown_likely_coding MGP_AJ_T0046572.1 MGP_AJ_G0023410.1 mouse_genomes_project 17 27403417 27423792 - MGP_AJ_P0046572 4930539E08Rik protein_coding protein_coding MGP_AJ_T0047077.1 MGP_AJ_G0023527.1 mouse_genomes_project 17 33053003 33056289 - MGP_AJ_P0047077 Gm15821 protein_coding protein_coding MGP_AJ_T0045874.1 MGP_AJ_G0023250.1 mouse_genomes_project 17 22516743 22540916 - MGP_AJ_P0045874 Gm43796 protein_coding protein_coding MGP_AJ_T0048719.1 MGP_AJ_G0024054.1 mouse_genomes_project 17 87387427 87391138 - MGP_AJ_P0048719 Atp6v1e2 protein_coding protein_coding MGP_AJ_T0102389.1 MGP_AJ_G0040131.1 mouse_genomes_project 17 19196082 19196595 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0013219.1 MGP_AJ_G0011314.1 mouse_genomes_project 17 20008181 20009041 - processed_pseudogene processed_pseudogene MGP_AJ_T0013232.1 MGP_AJ_G0011327.1 mouse_genomes_project 17 32865951 32868286 - processed_pseudogene processed_pseudogene MGP_AJ_T0046306.1 MGP_AJ_G0023352.1 mouse_genomes_project 17 24587210 24590299 - MGP_AJ_P0046306 Pdia2 protein_coding protein_coding MGP_AJ_T0046307.1 MGP_AJ_G0023352.1 mouse_genomes_project 17 24587217 24588128 - MGP_AJ_P0046307 Pdia2 protein_coding protein_coding MGP_AJ_T0046308.1 MGP_AJ_G0023352.1 mouse_genomes_project 17 24587236 24590274 - MGP_AJ_P0046308 Pdia2 protein_coding protein_coding MGP_AJ_T0046310.1 MGP_AJ_G0023352.1 mouse_genomes_project 17 24588705 24590220 - MGP_AJ_P0046310 Pdia2 protein_coding protein_coding MGP_AJ_T0048324.1 MGP_AJ_G0023910.1 mouse_genomes_project 17 57185096 57192444 + MGP_AJ_P0048324 Crb3 protein_coding protein_coding MGP_AJ_T0048325.1 MGP_AJ_G0023910.1 mouse_genomes_project 17 57188209 57192450 + MGP_AJ_P0048325 Crb3 protein_coding protein_coding MGP_AJ_T0048326.1 MGP_AJ_G0023910.1 mouse_genomes_project 17 57188261 57192449 + MGP_AJ_P0048326 Crb3 protein_coding protein_coding MGP_AJ_T0048327.1 MGP_AJ_G0023910.1 mouse_genomes_project 17 57188277 57191959 + MGP_AJ_P0048327 Crb3 protein_coding protein_coding MGP_AJ_T0048328.1 MGP_AJ_G0023910.1 mouse_genomes_project 17 57188486 57191696 + MGP_AJ_P0048328 Crb3 protein_coding protein_coding MGP_AJ_T0048329.1 MGP_AJ_G0023910.1 mouse_genomes_project 17 57188672 57192215 + MGP_AJ_P0048329 Crb3 protein_coding unknown_likely_coding MGP_AJ_T0048330.1 MGP_AJ_G0023910.1 mouse_genomes_project 17 57188717 57192215 + MGP_AJ_P0048330 Crb3 protein_coding unknown_likely_coding MGP_AJ_T0045549.1 MGP_AJ_G0023122.1 mouse_genomes_project 17 10417378 10419705 + Tcp1 protein_coding processed_transcript MGP_AJ_T0045550.1 MGP_AJ_G0023122.1 mouse_genomes_project 17 10418116 10419970 + MGP_AJ_P0045550 Tcp1 protein_coding protein_coding MGP_AJ_T0045551.1 MGP_AJ_G0023122.1 mouse_genomes_project 17 10418126 10421819 + Tcp1 protein_coding retained_intron MGP_AJ_T0045552.1 MGP_AJ_G0023122.1 mouse_genomes_project 17 10418126 10426134 + Tcp1 protein_coding retained_intron MGP_AJ_T0045553.1 MGP_AJ_G0023122.1 mouse_genomes_project 17 10418152 10421149 + Tcp1 protein_coding retained_intron MGP_AJ_T0045554.1 MGP_AJ_G0023122.1 mouse_genomes_project 17 10418243 10426067 + MGP_AJ_P0045554 Tcp1 protein_coding protein_coding MGP_AJ_T0045555.1 MGP_AJ_G0023122.1 mouse_genomes_project 17 10421263 10422231 + Tcp1 protein_coding retained_intron MGP_AJ_T0045556.1 MGP_AJ_G0023122.1 mouse_genomes_project 17 10421707 10424323 + Tcp1 protein_coding retained_intron MGP_AJ_T0045557.1 MGP_AJ_G0023122.1 mouse_genomes_project 17 10421871 10422739 + Tcp1 protein_coding retained_intron MGP_AJ_T0102417.1 MGP_AJ_G0040159.1 mouse_genomes_project 17 35572453 35574561 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0045775.1 MGP_AJ_G0023216.1 mouse_genomes_project 17 21816141 21823616 - MGP_AJ_P0045775 Zfp213 protein_coding protein_coding MGP_AJ_T0048648.1 MGP_AJ_G0024022.1 mouse_genomes_project 17 80900064 80955934 - MGP_AJ_P0048648 Cdkl4 protein_coding protein_coding MGP_AJ_T0046990.1 MGP_AJ_G0023510.1 mouse_genomes_project 17 32738910 32749506 + MGP_AJ_P0046990 Vps52 protein_coding protein_coding MGP_AJ_T0046991.1 MGP_AJ_G0023510.1 mouse_genomes_project 17 32739013 32748490 + MGP_AJ_P0046991 Vps52 protein_coding protein_coding MGP_AJ_T0046992.1 MGP_AJ_G0023510.1 mouse_genomes_project 17 32741151 32743613 + Vps52 protein_coding retained_intron MGP_AJ_T0046993.1 MGP_AJ_G0023510.1 mouse_genomes_project 17 32742129 32743642 + Vps52 protein_coding retained_intron MGP_AJ_T0046994.1 MGP_AJ_G0023510.1 mouse_genomes_project 17 32744252 32745952 + Vps52 protein_coding retained_intron MGP_AJ_T0046995.1 MGP_AJ_G0023510.1 mouse_genomes_project 17 32745519 32748788 + Vps52 protein_coding retained_intron MGP_AJ_T0102403.1 MGP_AJ_G0040145.1 mouse_genomes_project 17 33233929 33240997 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0102414.1 MGP_AJ_G0040156.1 mouse_genomes_project 17 35356141 35357058 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0048621.1 MGP_AJ_G0024008.1 mouse_genomes_project 17 79953144 80016953 + MGP_AJ_P0048621 Rmdn2 protein_coding protein_coding MGP_AJ_T0048622.1 MGP_AJ_G0024008.1 mouse_genomes_project 17 79959535 80016487 + MGP_AJ_P0048622 Rmdn2 protein_coding unknown_likely_coding MGP_AJ_T0047702.1 MGP_AJ_G0023696.1 mouse_genomes_project 17 37419726 37420902 + MGP_AJ_P0047702 Olfr134 protein_coding protein_coding MGP_AJ_T0102437.1 MGP_AJ_G0040179.1 mouse_genomes_project 17 36624667 36625594 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0048092.1 MGP_AJ_G0023824.1 mouse_genomes_project 17 48206617 48220213 + MGP_AJ_P0048092 Trem1 protein_coding protein_coding MGP_AJ_T0048093.1 MGP_AJ_G0023824.1 mouse_genomes_project 17 48206620 48220775 + MGP_AJ_P0048093 Trem1 protein_coding protein_coding MGP_AJ_T0048624.1 MGP_AJ_G0024010.1 mouse_genomes_project 17 80041749 80049820 - MGP_AJ_P0048624 Cyp1b1 protein_coding protein_coding MGP_AJ_T0010179.1 MGP_AJ_G0008301.1 mouse_genomes_project 17 24118654 24118746 - Gm25083 miRNA miRNA MGP_AJ_T0045970.1 MGP_AJ_G0023272.1 mouse_genomes_project 17 23032702 23045785 + MGP_AJ_P0045970 Zfp598 protein_coding protein_coding MGP_AJ_T0046981.1 MGP_AJ_G0023509.1 mouse_genomes_project 17 32735028 32738709 - MGP_AJ_P0046981 Rps18 protein_coding protein_coding MGP_AJ_T0046982.1 MGP_AJ_G0023509.1 mouse_genomes_project 17 32735032 32735721 - Rps18 protein_coding retained_intron MGP_AJ_T0046983.1 MGP_AJ_G0023509.1 mouse_genomes_project 17 32735032 32738301 - Rps18 protein_coding processed_transcript MGP_AJ_T0046984.1 MGP_AJ_G0023509.1 mouse_genomes_project 17 32735033 32738749 - Rps18 protein_coding retained_intron MGP_AJ_T0046985.1 MGP_AJ_G0023509.1 mouse_genomes_project 17 32735033 32737570 - Rps18 protein_coding processed_transcript MGP_AJ_T0046986.1 MGP_AJ_G0023509.1 mouse_genomes_project 17 32735037 32735575 - Rps18 protein_coding retained_intron MGP_AJ_T0046987.1 MGP_AJ_G0023509.1 mouse_genomes_project 17 32735302 32738742 - Rps18 protein_coding retained_intron MGP_AJ_T0046988.1 MGP_AJ_G0023509.1 mouse_genomes_project 17 32737913 32738749 - Rps18 protein_coding retained_intron MGP_AJ_T0046989.1 MGP_AJ_G0023509.1 mouse_genomes_project 17 32738607 32739100 - Rps18 protein_coding processed_transcript MGP_AJ_T0046009.1 MGP_AJ_G0023283.1 mouse_genomes_project 17 23167930 23201983 + MGP_AJ_P0046009 Meiob protein_coding protein_coding MGP_AJ_T0003787.1 MGP_AJ_G0003400.1 mouse_genomes_project 17 71030918 71057857 + Gm28727 antisense antisense MGP_AJ_T0010214.1 MGP_AJ_G0008336.1 mouse_genomes_project 17 56261981 56262094 - Gm44397 miRNA miRNA MGP_AJ_T0013296.1 MGP_AJ_G0011391.1 mouse_genomes_project 17 82143273 82143652 - processed_pseudogene processed_pseudogene MGP_AJ_T0048666.1 MGP_AJ_G0024032.1 mouse_genomes_project 17 83856201 83868604 - MGP_AJ_P0048666 Cox7a2l protein_coding protein_coding MGP_AJ_T0048667.1 MGP_AJ_G0024032.1 mouse_genomes_project 17 83856201 83868604 - MGP_AJ_P0048667 Cox7a2l protein_coding protein_coding MGP_AJ_T0048433.1 MGP_AJ_G0023951.1 mouse_genomes_project 17 68009699 68174419 - MGP_AJ_P0048433 Arhgap28 protein_coding protein_coding MGP_AJ_T0048434.1 MGP_AJ_G0023951.1 mouse_genomes_project 17 68012721 68070684 - MGP_AJ_P0048434 Arhgap28 protein_coding protein_coding MGP_AJ_T0048435.1 MGP_AJ_G0023951.1 mouse_genomes_project 17 68025683 68041421 - MGP_AJ_P0048435 Arhgap28 protein_coding nonsense_mediated_decay MGP_AJ_T0048436.1 MGP_AJ_G0023951.1 mouse_genomes_project 17 68037276 68065211 - MGP_AJ_P0048436 Arhgap28 protein_coding protein_coding MGP_AJ_T0047446.1 MGP_AJ_G0023606.1 mouse_genomes_project 17 34759469 34778551 - MGP_AJ_P0047446 Ddr1 protein_coding protein_coding MGP_AJ_T0047447.1 MGP_AJ_G0023606.1 mouse_genomes_project 17 34759469 34782524 - MGP_AJ_P0047447 Ddr1 protein_coding protein_coding MGP_AJ_T0047448.1 MGP_AJ_G0023606.1 mouse_genomes_project 17 34759472 34782064 - MGP_AJ_P0047448 Ddr1 protein_coding protein_coding MGP_AJ_T0047449.1 MGP_AJ_G0023606.1 mouse_genomes_project 17 34759472 34779983 - MGP_AJ_P0047449 Ddr1 protein_coding protein_coding MGP_AJ_T0047450.1 MGP_AJ_G0023606.1 mouse_genomes_project 17 34759472 34781966 - MGP_AJ_P0047450 Ddr1 protein_coding protein_coding MGP_AJ_T0047451.1 MGP_AJ_G0023606.1 mouse_genomes_project 17 34760333 34778493 - MGP_AJ_P0047451 Ddr1 protein_coding nonsense_mediated_decay MGP_AJ_T0047452.1 MGP_AJ_G0023606.1 mouse_genomes_project 17 34763203 34779903 - MGP_AJ_P0047452 Ddr1 protein_coding protein_coding MGP_AJ_T0047453.1 MGP_AJ_G0023606.1 mouse_genomes_project 17 34767942 34781902 - MGP_AJ_P0047453 Ddr1 protein_coding protein_coding MGP_AJ_T0047454.1 MGP_AJ_G0023606.1 mouse_genomes_project 17 34767970 34782546 - MGP_AJ_P0047454 Ddr1 protein_coding protein_coding MGP_AJ_T0047455.1 MGP_AJ_G0023606.1 mouse_genomes_project 17 34768070 34775936 - MGP_AJ_P0047455 Ddr1 protein_coding protein_coding MGP_AJ_T0047456.1 MGP_AJ_G0023606.1 mouse_genomes_project 17 34769046 34779985 - MGP_AJ_P0047456 Ddr1 protein_coding protein_coding MGP_AJ_T0047457.1 MGP_AJ_G0023606.1 mouse_genomes_project 17 34770956 34780256 - MGP_AJ_P0047457 Ddr1 protein_coding protein_coding MGP_AJ_T0047434.1 MGP_AJ_G0023605.1 mouse_genomes_project 17 34746372 34752463 - MGP_AJ_P0047434 Gtf2h4 protein_coding protein_coding MGP_AJ_T0047435.1 MGP_AJ_G0023605.1 mouse_genomes_project 17 34746380 34747415 - Gtf2h4 protein_coding retained_intron MGP_AJ_T0047436.1 MGP_AJ_G0023605.1 mouse_genomes_project 17 34746381 34748494 - Gtf2h4 protein_coding retained_intron MGP_AJ_T0047437.1 MGP_AJ_G0023605.1 mouse_genomes_project 17 34746383 34752342 - MGP_AJ_P0047437 Gtf2h4 protein_coding protein_coding MGP_AJ_T0047438.1 MGP_AJ_G0023605.1 mouse_genomes_project 17 34746484 34752427 - MGP_AJ_P0047438 Gtf2h4 protein_coding nonsense_mediated_decay MGP_AJ_T0047439.1 MGP_AJ_G0023605.1 mouse_genomes_project 17 34749027 34752412 - Gtf2h4 protein_coding retained_intron MGP_AJ_T0047440.1 MGP_AJ_G0023605.1 mouse_genomes_project 17 34749384 34752414 - MGP_AJ_P0047440 Gtf2h4 protein_coding protein_coding MGP_AJ_T0047441.1 MGP_AJ_G0023605.1 mouse_genomes_project 17 34749985 34752241 - MGP_AJ_P0047441 Gtf2h4 protein_coding protein_coding MGP_AJ_T0047442.1 MGP_AJ_G0023605.1 mouse_genomes_project 17 34750470 34752405 - Gtf2h4 protein_coding retained_intron MGP_AJ_T0047443.1 MGP_AJ_G0023605.1 mouse_genomes_project 17 34750607 34752022 - Gtf2h4 protein_coding retained_intron MGP_AJ_T0047444.1 MGP_AJ_G0023605.1 mouse_genomes_project 17 34750763 34752283 - Gtf2h4 protein_coding processed_transcript MGP_AJ_T0047445.1 MGP_AJ_G0023605.1 mouse_genomes_project 17 34750778 34752383 - MGP_AJ_P0047445 Gtf2h4 protein_coding protein_coding MGP_AJ_T0010208.1 MGP_AJ_G0008330.1 mouse_genomes_project 17 35001256 35001337 + Mir1894 miRNA miRNA MGP_AJ_T0045501.1 MGP_AJ_G0023106.1 mouse_genomes_project 17 6491781 6511699 + MGP_AJ_P0045501 1700010I14Rik protein_coding protein_coding MGP_AJ_T0045502.1 MGP_AJ_G0023106.1 mouse_genomes_project 17 6491805 6511698 + MGP_AJ_P0045502 1700010I14Rik protein_coding protein_coding MGP_AJ_T0045503.1 MGP_AJ_G0023106.1 mouse_genomes_project 17 6491831 6508654 + 1700010I14Rik protein_coding processed_transcript MGP_AJ_T0047016.1 MGP_AJ_G0023517.1 mouse_genomes_project 17 32820394 32823818 - MGP_AJ_P0047016 Slc39a7 protein_coding protein_coding MGP_AJ_T0047017.1 MGP_AJ_G0023517.1 mouse_genomes_project 17 32820396 32823672 - MGP_AJ_P0047017 Slc39a7 protein_coding protein_coding MGP_AJ_T0047018.1 MGP_AJ_G0023517.1 mouse_genomes_project 17 32820400 32823776 - Slc39a7 protein_coding retained_intron MGP_AJ_T0047019.1 MGP_AJ_G0023517.1 mouse_genomes_project 17 32821973 32823156 - Slc39a7 protein_coding retained_intron MGP_AJ_T0047020.1 MGP_AJ_G0023517.1 mouse_genomes_project 17 32822301 32823784 - MGP_AJ_P0047020 Slc39a7 protein_coding protein_coding MGP_AJ_T0047021.1 MGP_AJ_G0023517.1 mouse_genomes_project 17 32822720 32823810 - Slc39a7 protein_coding processed_transcript MGP_AJ_T0045913.1 MGP_AJ_G0023257.1 mouse_genomes_project 17 22768328 22779294 + MGP_AJ_P0045913 Rnps1 protein_coding protein_coding MGP_AJ_T0045914.1 MGP_AJ_G0023257.1 mouse_genomes_project 17 22768328 22779294 + MGP_AJ_P0045914 Rnps1 protein_coding protein_coding MGP_AJ_T0045915.1 MGP_AJ_G0023257.1 mouse_genomes_project 17 22768328 22779294 + MGP_AJ_P0045915 Rnps1 protein_coding protein_coding MGP_AJ_T0006989.1 MGP_AJ_G0005745.1 mouse_genomes_project 17 85347557 85350298 - 1110020A21Rik lincRNA lincRNA MGP_AJ_T0047419.1 MGP_AJ_G0023602.1 mouse_genomes_project 17 34692913 34701385 - protein_coding processed_transcript MGP_AJ_T0046180.1 MGP_AJ_G0023322.1 mouse_genomes_project 17 24106593 24120197 + MGP_AJ_P0046180 Mslnl protein_coding protein_coding MGP_AJ_T0006945.1 MGP_AJ_G0005713.1 mouse_genomes_project 17 33133040 33145539 - Gm20513 lincRNA lincRNA MGP_AJ_T0047981.1 MGP_AJ_G0023791.1 mouse_genomes_project 17 46707914 46708687 + MGP_AJ_P0047981 2310039H08Rik protein_coding protein_coding MGP_AJ_T0013269.1 MGP_AJ_G0011364.1 mouse_genomes_project 17 53358944 53360912 + processed_pseudogene processed_pseudogene MGP_AJ_T0003785.1 MGP_AJ_G0003398.1 mouse_genomes_project 17 69448532 69450379 - 2410021H03Rik antisense antisense MGP_AJ_T0048543.1 MGP_AJ_G0023980.1 mouse_genomes_project 17 74133022 74198320 - MGP_AJ_P0048543 Xdh protein_coding protein_coding MGP_AJ_T0000991.1 MGP_AJ_G0000922.1 mouse_genomes_project 17 51876264 51878399 + TEC TEC MGP_AJ_T0047379.1 MGP_AJ_G0023590.1 mouse_genomes_project 17 34190919 34194184 + MGP_AJ_P0047379 Gm16181 protein_coding protein_coding MGP_AJ_T0006900.1 MGP_AJ_G0005677.1 mouse_genomes_project 17 7820798 7825504 + 1700110C19Rik lincRNA lincRNA MGP_AJ_T0006901.1 MGP_AJ_G0005677.1 mouse_genomes_project 17 7820798 7825504 + 1700110C19Rik lincRNA lincRNA MGP_AJ_T0047710.1 MGP_AJ_G0023701.1 mouse_genomes_project 17 37815234 37821662 + MGP_AJ_P0047710 protein_coding protein_coding MGP_AJ_T0047711.1 MGP_AJ_G0023701.1 mouse_genomes_project 17 37815234 37821659 + MGP_AJ_P0047711 protein_coding protein_coding MGP_AJ_T0045730.1 MGP_AJ_G0023196.1 mouse_genomes_project 17 19445685 19464266 + MGP_AJ_P0045730 Zfp51 protein_coding protein_coding MGP_AJ_T0013293.1 MGP_AJ_G0011388.1 mouse_genomes_project 17 79382061 79383038 + processed_pseudogene processed_pseudogene MGP_AJ_T0048710.1 MGP_AJ_G0024050.1 mouse_genomes_project 17 86594433 87094832 + MGP_AJ_P0048710 Prkce protein_coding protein_coding MGP_AJ_T0048711.1 MGP_AJ_G0024050.1 mouse_genomes_project 17 86594467 86604162 + MGP_AJ_P0048711 Prkce protein_coding nonsense_mediated_decay MGP_AJ_T0048712.1 MGP_AJ_G0024050.1 mouse_genomes_project 17 86594822 87092325 + MGP_AJ_P0048712 Prkce protein_coding protein_coding MGP_AJ_T0048713.1 MGP_AJ_G0024050.1 mouse_genomes_project 17 86923421 86928974 + Prkce protein_coding retained_intron MGP_AJ_T0048714.1 MGP_AJ_G0024050.1 mouse_genomes_project 17 86926209 86929319 + Prkce protein_coding retained_intron MGP_AJ_T0045996.1 MGP_AJ_G0023279.1 mouse_genomes_project 17 23086978 23087564 - Ndufb10 protein_coding retained_intron MGP_AJ_T0045997.1 MGP_AJ_G0023279.1 mouse_genomes_project 17 23086978 23087821 - Ndufb10 protein_coding retained_intron MGP_AJ_T0045998.1 MGP_AJ_G0023279.1 mouse_genomes_project 17 23086978 23089324 - Ndufb10 protein_coding retained_intron MGP_AJ_T0045999.1 MGP_AJ_G0023279.1 mouse_genomes_project 17 23086978 23089382 - MGP_AJ_P0045999 Ndufb10 protein_coding protein_coding MGP_AJ_T0046000.1 MGP_AJ_G0023279.1 mouse_genomes_project 17 23087319 23089316 - MGP_AJ_P0046000 Ndufb10 protein_coding protein_coding MGP_AJ_T0046001.1 MGP_AJ_G0023279.1 mouse_genomes_project 17 23087596 23089298 - Ndufb10 protein_coding processed_transcript MGP_AJ_T0045845.1 MGP_AJ_G0023240.1 mouse_genomes_project 17 22184315 22206171 + MGP_AJ_P0045845 protein_coding protein_coding MGP_AJ_T0045790.1 MGP_AJ_G0023219.1 mouse_genomes_project 17 21891571 21908430 - MGP_AJ_P0045790 Mmp25 protein_coding protein_coding MGP_AJ_T0045612.1 MGP_AJ_G0023137.1 mouse_genomes_project 17 12629458 12644410 + MGP_AJ_P0045612 Ermard protein_coding protein_coding MGP_AJ_T0045613.1 MGP_AJ_G0023137.1 mouse_genomes_project 17 12629488 12654391 + MGP_AJ_P0045613 Ermard protein_coding protein_coding MGP_AJ_T0045614.1 MGP_AJ_G0023137.1 mouse_genomes_project 17 12629488 12643465 + MGP_AJ_P0045614 Ermard protein_coding protein_coding MGP_AJ_T0045615.1 MGP_AJ_G0023137.1 mouse_genomes_project 17 12646848 12653925 + MGP_AJ_P0045615 Ermard protein_coding protein_coding MGP_AJ_T0102432.1 MGP_AJ_G0040174.1 mouse_genomes_project 17 36481252 36482645 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0013210.1 MGP_AJ_G0011305.1 mouse_genomes_project 17 6830398 6831385 - processed_pseudogene processed_pseudogene MGP_AJ_T0046819.1 MGP_AJ_G0023470.1 mouse_genomes_project 17 31590933 31605985 - MGP_AJ_P0046819 Zfp811 protein_coding protein_coding MGP_AJ_T0046820.1 MGP_AJ_G0023470.1 mouse_genomes_project 17 31592669 31596201 - MGP_AJ_P0046820 Zfp811 protein_coding protein_coding MGP_AJ_T0045812.1 MGP_AJ_G0023227.1 mouse_genomes_project 17 21987926 21998282 + MGP_AJ_P0045812 Pkmyt1 protein_coding protein_coding MGP_AJ_T0048351.1 MGP_AJ_G0023923.1 mouse_genomes_project 17 57848529 57848982 - MGP_AJ_P0048351 Gm21834 protein_coding protein_coding MGP_AJ_T0048308.1 MGP_AJ_G0023902.1 mouse_genomes_project 17 57074179 57103474 - MGP_AJ_P0048308 Acer1 protein_coding protein_coding MGP_AJ_T0048249.1 MGP_AJ_G0023883.1 mouse_genomes_project 17 56426163 56457707 + MGP_AJ_P0048249 Kdm4b protein_coding protein_coding MGP_AJ_T0048250.1 MGP_AJ_G0023883.1 mouse_genomes_project 17 56426175 56504556 + MGP_AJ_P0048250 Kdm4b protein_coding protein_coding MGP_AJ_T0048251.1 MGP_AJ_G0023883.1 mouse_genomes_project 17 56426192 56504551 + MGP_AJ_P0048251 Kdm4b protein_coding protein_coding MGP_AJ_T0048252.1 MGP_AJ_G0023883.1 mouse_genomes_project 17 56473945 56487712 + Kdm4b protein_coding processed_transcript MGP_AJ_T0048253.1 MGP_AJ_G0023883.1 mouse_genomes_project 17 56495208 56495477 + Kdm4b protein_coding processed_transcript MGP_AJ_T0048254.1 MGP_AJ_G0023883.1 mouse_genomes_project 17 56495611 56504562 + MGP_AJ_P0048254 Kdm4b protein_coding protein_coding MGP_AJ_T0102377.1 MGP_AJ_G0040119.1 mouse_genomes_project 17 17603102 17604008 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0047715.1 MGP_AJ_G0023705.1 mouse_genomes_project 17 38326797 38330144 - MGP_AJ_P0047715 Esp23 protein_coding protein_coding MGP_AJ_T0013253.1 MGP_AJ_G0011348.1 mouse_genomes_project 17 37089106 37091814 - processed_pseudogene processed_pseudogene MGP_AJ_T0046299.1 MGP_AJ_G0023350.1 mouse_genomes_project 17 24513526 24516616 + MGP_AJ_P0046299 Mrpl28 protein_coding protein_coding MGP_AJ_T0046300.1 MGP_AJ_G0023350.1 mouse_genomes_project 17 24513723 24514935 + Mrpl28 protein_coding retained_intron MGP_AJ_T0047105.1 MGP_AJ_G0023536.1 mouse_genomes_project 17 33318280 33325178 - MGP_AJ_P0047105 Btnl4 protein_coding protein_coding MGP_AJ_T0006940.1 MGP_AJ_G0005708.1 mouse_genomes_project 17 31144072 31146112 + lincRNA lincRNA MGP_AJ_T0045926.1 MGP_AJ_G0023262.1 mouse_genomes_project 17 22829279 22834799 - MGP_AJ_P0045926 Mlst8 protein_coding protein_coding MGP_AJ_T0045927.1 MGP_AJ_G0023262.1 mouse_genomes_project 17 22829279 22834799 - MGP_AJ_P0045927 Mlst8 protein_coding protein_coding MGP_AJ_T0046135.1 MGP_AJ_G0023311.1 mouse_genomes_project 17 23714933 23717207 - MGP_AJ_P0046135 Tpsab1 protein_coding protein_coding MGP_AJ_T0046136.1 MGP_AJ_G0023311.1 mouse_genomes_project 17 23714934 23717242 - Tpsab1 protein_coding processed_transcript MGP_AJ_T0046246.1 MGP_AJ_G0023337.1 mouse_genomes_project 17 24236594 24241614 - MGP_AJ_P0046246 Fam195a protein_coding protein_coding MGP_AJ_T0046315.1 MGP_AJ_G0023354.1 mouse_genomes_project 17 24594161 24603360 + protein_coding processed_transcript MGP_AJ_T0046316.1 MGP_AJ_G0023354.1 mouse_genomes_project 17 24594168 24603364 + MGP_AJ_P0046316 protein_coding protein_coding MGP_AJ_T0046317.1 MGP_AJ_G0023354.1 mouse_genomes_project 17 24594172 24603369 + MGP_AJ_P0046317 protein_coding protein_coding MGP_AJ_T0046318.1 MGP_AJ_G0023354.1 mouse_genomes_project 17 24594173 24595043 + protein_coding retained_intron MGP_AJ_T0046319.1 MGP_AJ_G0023354.1 mouse_genomes_project 17 24594175 24594846 + protein_coding retained_intron MGP_AJ_T0046320.1 MGP_AJ_G0023354.1 mouse_genomes_project 17 24594186 24603362 + protein_coding retained_intron MGP_AJ_T0046321.1 MGP_AJ_G0023354.1 mouse_genomes_project 17 24594190 24595185 + protein_coding retained_intron MGP_AJ_T0046322.1 MGP_AJ_G0023354.1 mouse_genomes_project 17 24594212 24598016 + protein_coding retained_intron MGP_AJ_T0046323.1 MGP_AJ_G0023354.1 mouse_genomes_project 17 24594222 24595307 + protein_coding retained_intron MGP_AJ_T0046324.1 MGP_AJ_G0023354.1 mouse_genomes_project 17 24598663 24603362 + protein_coding retained_intron MGP_AJ_T0046325.1 MGP_AJ_G0023354.1 mouse_genomes_project 17 24599051 24603360 + protein_coding retained_intron MGP_AJ_T0046745.1 MGP_AJ_G0023451.1 mouse_genomes_project 17 30431184 30434966 + MGP_AJ_P0046745 Cryaa protein_coding protein_coding MGP_AJ_T0010187.1 MGP_AJ_G0008309.1 mouse_genomes_project 17 25756133 25756194 - Mir7214 miRNA miRNA MGP_AJ_T0046281.1 MGP_AJ_G0023344.1 mouse_genomes_project 17 24326450 24338821 + MGP_AJ_P0046281 D630044L22Rik protein_coding protein_coding MGP_AJ_T0047776.1 MGP_AJ_G0023741.1 mouse_genomes_project 17 44081031 44176557 + MGP_AJ_P0047776 Clic5 protein_coding protein_coding MGP_AJ_T0047909.1 MGP_AJ_G0023768.1 mouse_genomes_project 17 46167771 46193045 - MGP_AJ_P0047909 Tjap1 protein_coding protein_coding MGP_AJ_T0047910.1 MGP_AJ_G0023768.1 mouse_genomes_project 17 46167771 46193045 - MGP_AJ_P0047910 Tjap1 protein_coding protein_coding MGP_AJ_T0047911.1 MGP_AJ_G0023768.1 mouse_genomes_project 17 46167771 46193045 - MGP_AJ_P0047911 Tjap1 protein_coding protein_coding MGP_AJ_T0047912.1 MGP_AJ_G0023768.1 mouse_genomes_project 17 46170644 46173708 - MGP_AJ_P0047912 Tjap1 protein_coding unknown_likely_coding MGP_AJ_T0003730.1 MGP_AJ_G0003358.1 mouse_genomes_project 17 26426504 26444856 - antisense antisense MGP_AJ_T0045698.1 MGP_AJ_G0023173.1 mouse_genomes_project 17 18241575 18273395 + MGP_AJ_P0045698 Vmn2r107 protein_coding protein_coding MGP_AJ_T0013217.1 MGP_AJ_G0011312.1 mouse_genomes_project 17 13155348 13155606 - processed_pseudogene processed_pseudogene MGP_AJ_T0048520.1 MGP_AJ_G0023970.1 mouse_genomes_project 17 71894080 71906054 + Fam179a protein_coding processed_transcript MGP_AJ_T0048521.1 MGP_AJ_G0023970.1 mouse_genomes_project 17 71894080 71950421 + MGP_AJ_P0048521 Fam179a protein_coding protein_coding MGP_AJ_T0048522.1 MGP_AJ_G0023970.1 mouse_genomes_project 17 71894084 71910038 + Fam179a protein_coding processed_transcript MGP_AJ_T0048523.1 MGP_AJ_G0023970.1 mouse_genomes_project 17 71905686 71950421 + MGP_AJ_P0048523 Fam179a protein_coding protein_coding MGP_AJ_T0048524.1 MGP_AJ_G0023970.1 mouse_genomes_project 17 71907574 71950295 + MGP_AJ_P0048524 Fam179a protein_coding protein_coding MGP_AJ_T0048525.1 MGP_AJ_G0023970.1 mouse_genomes_project 17 71934110 71950421 + Fam179a protein_coding retained_intron MGP_AJ_T0013204.1 MGP_AJ_G0011299.1 mouse_genomes_project 17 99943 100378 + processed_pseudogene processed_pseudogene MGP_AJ_T0045561.1 MGP_AJ_G0023124.1 mouse_genomes_project 17 10448874 10467463 - MGP_AJ_P0045561 Acat2 protein_coding protein_coding MGP_AJ_T0045562.1 MGP_AJ_G0023124.1 mouse_genomes_project 17 10450387 10462326 - Acat2 protein_coding processed_transcript MGP_AJ_T0047986.1 MGP_AJ_G0023796.1 mouse_genomes_project 17 46854852 46869112 + MGP_AJ_P0047986 Prph2 protein_coding protein_coding MGP_AJ_T0047987.1 MGP_AJ_G0023796.1 mouse_genomes_project 17 46854871 46864526 + Prph2 protein_coding retained_intron MGP_AJ_T0100914.1 MGP_AJ_G0038880.1 mouse_genomes_project 17 10424380 10424508 + Snora20 snoRNA snoRNA MGP_AJ_T0045859.1 MGP_AJ_G0023248.1 mouse_genomes_project 17 22426072 22493183 - MGP_AJ_P0045859 Pdpk1 protein_coding protein_coding MGP_AJ_T0045860.1 MGP_AJ_G0023248.1 mouse_genomes_project 17 22426080 22493276 - MGP_AJ_P0045860 Pdpk1 protein_coding protein_coding MGP_AJ_T0045861.1 MGP_AJ_G0023248.1 mouse_genomes_project 17 22428209 22493293 - MGP_AJ_P0045861 Pdpk1 protein_coding protein_coding MGP_AJ_T0045862.1 MGP_AJ_G0023248.1 mouse_genomes_project 17 22440580 22446170 - Pdpk1 protein_coding processed_transcript MGP_AJ_T0045863.1 MGP_AJ_G0023248.1 mouse_genomes_project 17 22443975 22502615 - Pdpk1 protein_coding processed_transcript MGP_AJ_T0045864.1 MGP_AJ_G0023248.1 mouse_genomes_project 17 22455265 22493279 - Pdpk1 protein_coding retained_intron MGP_AJ_T0045865.1 MGP_AJ_G0023248.1 mouse_genomes_project 17 22458097 22492529 - MGP_AJ_P0045865 Pdpk1 protein_coding protein_coding MGP_AJ_T0045866.1 MGP_AJ_G0023248.1 mouse_genomes_project 17 22458149 22472050 - MGP_AJ_P0045866 Pdpk1 protein_coding protein_coding MGP_AJ_T0045867.1 MGP_AJ_G0023248.1 mouse_genomes_project 17 22462169 22492851 - MGP_AJ_P0045867 Pdpk1 protein_coding protein_coding MGP_AJ_T0048373.1 MGP_AJ_G0023932.1 mouse_genomes_project 17 64719698 64874727 + MGP_AJ_P0048373 Man2a1 protein_coding protein_coding MGP_AJ_T0048374.1 MGP_AJ_G0023932.1 mouse_genomes_project 17 64833182 64834565 + Man2a1 protein_coding retained_intron MGP_AJ_T0048375.1 MGP_AJ_G0023932.1 mouse_genomes_project 17 64833381 64874455 + MGP_AJ_P0048375 Man2a1 protein_coding protein_coding MGP_AJ_T0046903.1 MGP_AJ_G0023494.1 mouse_genomes_project 17 32517581 32536237 - MGP_AJ_P0046903 Rab11b protein_coding protein_coding MGP_AJ_T0046904.1 MGP_AJ_G0023494.1 mouse_genomes_project 17 32521846 32536013 - MGP_AJ_P0046904 Rab11b protein_coding protein_coding MGP_AJ_T0046905.1 MGP_AJ_G0023494.1 mouse_genomes_project 17 32521929 32525664 - MGP_AJ_P0046905 Rab11b protein_coding protein_coding MGP_AJ_T0046906.1 MGP_AJ_G0023494.1 mouse_genomes_project 17 32524776 32536191 - Rab11b protein_coding processed_transcript MGP_AJ_T0048657.1 MGP_AJ_G0024028.1 mouse_genomes_project 17 81801728 81801889 + MGP_AJ_P0048657 Gm11096 protein_coding protein_coding MGP_AJ_T0046582.1 MGP_AJ_G0023413.1 mouse_genomes_project 17 27479894 27519977 - MGP_AJ_P0046582 Stk38 protein_coding protein_coding MGP_AJ_T0046583.1 MGP_AJ_G0023413.1 mouse_genomes_project 17 27480026 27482087 - Stk38 protein_coding processed_transcript MGP_AJ_T0046584.1 MGP_AJ_G0023413.1 mouse_genomes_project 17 27481246 27519977 - MGP_AJ_P0046584 Stk38 protein_coding protein_coding MGP_AJ_T0046585.1 MGP_AJ_G0023413.1 mouse_genomes_project 17 27481948 27490852 - Stk38 protein_coding retained_intron MGP_AJ_T0046586.1 MGP_AJ_G0023413.1 mouse_genomes_project 17 27482101 27483729 - Stk38 protein_coding processed_transcript MGP_AJ_T0046587.1 MGP_AJ_G0023413.1 mouse_genomes_project 17 27483291 27491135 - Stk38 protein_coding retained_intron MGP_AJ_T0046588.1 MGP_AJ_G0023413.1 mouse_genomes_project 17 27483352 27488487 - Stk38 protein_coding processed_transcript MGP_AJ_T0046589.1 MGP_AJ_G0023413.1 mouse_genomes_project 17 27483352 27489022 - Stk38 protein_coding processed_transcript MGP_AJ_T0046590.1 MGP_AJ_G0023413.1 mouse_genomes_project 17 27483580 27488772 - Stk38 protein_coding processed_transcript MGP_AJ_T0046591.1 MGP_AJ_G0023413.1 mouse_genomes_project 17 27486404 27488757 - Stk38 protein_coding processed_transcript MGP_AJ_T0046592.1 MGP_AJ_G0023413.1 mouse_genomes_project 17 27488777 27519985 - Stk38 protein_coding processed_transcript MGP_AJ_T0046593.1 MGP_AJ_G0023413.1 mouse_genomes_project 17 27492209 27510412 - Stk38 protein_coding retained_intron MGP_AJ_T0046594.1 MGP_AJ_G0023413.1 mouse_genomes_project 17 27496591 27500092 - Stk38 protein_coding processed_transcript MGP_AJ_T0046595.1 MGP_AJ_G0023413.1 mouse_genomes_project 17 27500078 27519775 - Stk38 protein_coding processed_transcript MGP_AJ_T0046596.1 MGP_AJ_G0023413.1 mouse_genomes_project 17 27507920 27519936 - Stk38 protein_coding processed_transcript MGP_AJ_T0045527.1 MGP_AJ_G0023114.1 mouse_genomes_project 17 9913433 10001349 - MGP_AJ_P0045527 Slc22a3 protein_coding protein_coding MGP_AJ_T0010211.1 MGP_AJ_G0008333.1 mouse_genomes_project 17 46141591 46141680 + Mir693 miRNA miRNA MGP_AJ_T0045507.1 MGP_AJ_G0023109.1 mouse_genomes_project 17 7900262 8347753 - MGP_AJ_P0045507 Pacrg protein_coding protein_coding MGP_AJ_T0045508.1 MGP_AJ_G0023109.1 mouse_genomes_project 17 8073986 8128922 - Pacrg protein_coding processed_transcript MGP_AJ_T0048428.1 MGP_AJ_G0023947.1 mouse_genomes_project 17 66702167 66741994 - MGP_AJ_P0048428 Themis3 protein_coding protein_coding MGP_AJ_T0017561.1 MGP_AJ_G0015322.1 mouse_genomes_project 17 32535698 32537603 + Gm17251 processed_transcript processed_transcript MGP_AJ_T0101748.1 MGP_AJ_G0039678.1 mouse_genomes_project 17 53746523 53747189 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0045759.1 MGP_AJ_G0023211.1 mouse_genomes_project 17 20554951 20578154 + Zfp946 protein_coding processed_transcript MGP_AJ_T0045760.1 MGP_AJ_G0023211.1 mouse_genomes_project 17 20554988 20587407 + MGP_AJ_P0045760 Zfp946 protein_coding protein_coding MGP_AJ_T0045761.1 MGP_AJ_G0023211.1 mouse_genomes_project 17 20554997 20587407 + MGP_AJ_P0045761 Zfp946 protein_coding protein_coding MGP_AJ_T0045762.1 MGP_AJ_G0023211.1 mouse_genomes_project 17 20577388 20587407 + MGP_AJ_P0045762 Zfp946 protein_coding unknown_likely_coding MGP_AJ_T0045763.1 MGP_AJ_G0023211.1 mouse_genomes_project 17 20581839 20586555 + MGP_AJ_P0045763 Zfp946 protein_coding protein_coding MGP_AJ_T0003733.1 MGP_AJ_G0003361.1 mouse_genomes_project 17 27413700 27415204 + 1700030A11Rik antisense antisense MGP_AJ_T0048352.1 MGP_AJ_G0023924.1 mouse_genomes_project 17 57875355 58491975 + MGP_AJ_P0048352 Cntnap5c protein_coding unknown_likely_coding MGP_AJ_T0048353.1 MGP_AJ_G0023924.1 mouse_genomes_project 17 57875355 58491975 + MGP_AJ_P0048353 Cntnap5c protein_coding protein_coding MGP_AJ_T0013302.1 MGP_AJ_G0011397.1 mouse_genomes_project 17 91085681 91086016 - processed_pseudogene processed_pseudogene MGP_AJ_T0045704.1 MGP_AJ_G0023179.1 mouse_genomes_project 17 18537106 18538138 - MGP_AJ_P0045704 Fpr-rs3 protein_coding protein_coding MGP_AJ_T0046797.1 MGP_AJ_G0023462.1 mouse_genomes_project 17 31179481 31187244 - MGP_AJ_P0046797 Pglyrp2 protein_coding protein_coding MGP_AJ_T0046798.1 MGP_AJ_G0023462.1 mouse_genomes_project 17 31179723 31191060 - MGP_AJ_P0046798 Pglyrp2 protein_coding protein_coding MGP_AJ_T0048589.1 MGP_AJ_G0023993.1 mouse_genomes_project 17 78529428 78706429 + MGP_AJ_P0048589 Crim1 protein_coding protein_coding MGP_AJ_T0045417.1 MGP_AJ_G0023079.1 mouse_genomes_project 17 3128601 3167285 - MGP_AJ_P0045417 Serac1 protein_coding protein_coding MGP_AJ_T0045418.1 MGP_AJ_G0023079.1 mouse_genomes_project 17 3130309 3136446 - Serac1 protein_coding processed_transcript MGP_AJ_T0045419.1 MGP_AJ_G0023079.1 mouse_genomes_project 17 3130471 3167271 - MGP_AJ_P0045419 Serac1 protein_coding protein_coding MGP_AJ_T0045420.1 MGP_AJ_G0023079.1 mouse_genomes_project 17 3136417 3137779 - Serac1 protein_coding retained_intron MGP_AJ_T0045421.1 MGP_AJ_G0023079.1 mouse_genomes_project 17 3152565 3167277 - Serac1 protein_coding processed_transcript MGP_AJ_T0047718.1 MGP_AJ_G0023708.1 mouse_genomes_project 17 39797837 39799784 + MGP_AJ_P0047718 Esp38 protein_coding protein_coding MGP_AJ_T0048716.1 MGP_AJ_G0024052.1 mouse_genomes_project 17 87191792 87274645 + MGP_AJ_P0048716 Epas1 protein_coding protein_coding MGP_AJ_T0010190.1 MGP_AJ_G0008312.1 mouse_genomes_project 17 25809525 25809584 + Mir7218 miRNA miRNA MGP_AJ_T0045528.1 MGP_AJ_G0023115.1 mouse_genomes_project 17 10076323 10120553 + MGP_AJ_P0045528 Slc22a2 protein_coding protein_coding MGP_AJ_T0047751.1 MGP_AJ_G0023732.1 mouse_genomes_project 17 43366018 43393174 - MGP_AJ_P0047751 Mep1a protein_coding protein_coding MGP_AJ_T0047752.1 MGP_AJ_G0023732.1 mouse_genomes_project 17 43366025 43393135 - MGP_AJ_P0047752 Mep1a protein_coding protein_coding MGP_AJ_T0047753.1 MGP_AJ_G0023732.1 mouse_genomes_project 17 43388261 43390844 - Mep1a protein_coding processed_transcript MGP_AJ_T0047754.1 MGP_AJ_G0023732.1 mouse_genomes_project 17 43392605 43393095 - Mep1a protein_coding retained_intron MGP_AJ_T0102404.1 MGP_AJ_G0040146.1 mouse_genomes_project 17 33368639 33369031 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0047683.1 MGP_AJ_G0023679.1 mouse_genomes_project 17 36868382 36869626 - MGP_AJ_P0047683 Olfr116 protein_coding protein_coding MGP_AJ_T0046376.1 MGP_AJ_G0023367.1 mouse_genomes_project 17 25363129 25367892 + MGP_AJ_P0046376 Phf1 protein_coding protein_coding MGP_AJ_T0046086.1 MGP_AJ_G0023299.1 mouse_genomes_project 17 23501800 23530155 + MGP_AJ_P0046086 Clcn7 protein_coding protein_coding MGP_AJ_T0046087.1 MGP_AJ_G0023299.1 mouse_genomes_project 17 23501874 23514609 + Clcn7 protein_coding retained_intron MGP_AJ_T0046088.1 MGP_AJ_G0023299.1 mouse_genomes_project 17 23504991 23530149 + MGP_AJ_P0046088 Clcn7 protein_coding protein_coding MGP_AJ_T0046089.1 MGP_AJ_G0023299.1 mouse_genomes_project 17 23513874 23518658 + MGP_AJ_P0046089 Clcn7 protein_coding protein_coding MGP_AJ_T0046090.1 MGP_AJ_G0023299.1 mouse_genomes_project 17 23514381 23520472 + Clcn7 protein_coding processed_transcript MGP_AJ_T0046091.1 MGP_AJ_G0023299.1 mouse_genomes_project 17 23519245 23525992 + MGP_AJ_P0046091 Clcn7 protein_coding protein_coding MGP_AJ_T0046092.1 MGP_AJ_G0023299.1 mouse_genomes_project 17 23526742 23527793 + Clcn7 protein_coding retained_intron MGP_AJ_T0046484.1 MGP_AJ_G0023394.1 mouse_genomes_project 17 26715470 26783132 + MGP_AJ_P0046484 Ppard protein_coding protein_coding MGP_AJ_T0046485.1 MGP_AJ_G0023394.1 mouse_genomes_project 17 26715482 26778029 + Ppard protein_coding retained_intron MGP_AJ_T0046486.1 MGP_AJ_G0023394.1 mouse_genomes_project 17 26715498 26781511 + Ppard protein_coding processed_transcript MGP_AJ_T0046487.1 MGP_AJ_G0023394.1 mouse_genomes_project 17 26715523 26781589 + Ppard protein_coding retained_intron MGP_AJ_T0046488.1 MGP_AJ_G0023394.1 mouse_genomes_project 17 26753845 26755301 + Ppard protein_coding processed_transcript MGP_AJ_T0046489.1 MGP_AJ_G0023394.1 mouse_genomes_project 17 26754330 26780366 + MGP_AJ_P0046489 Ppard protein_coding protein_coding MGP_AJ_T0006947.1 MGP_AJ_G0005715.1 mouse_genomes_project 17 34137433 34139501 + Gm17705 lincRNA lincRNA MGP_AJ_T0013225.1 MGP_AJ_G0011320.1 mouse_genomes_project 17 24665019 24666079 + processed_pseudogene processed_pseudogene MGP_AJ_T0000987.1 MGP_AJ_G0000918.1 mouse_genomes_project 17 51817644 51819630 - TEC TEC MGP_AJ_T0046760.1 MGP_AJ_G0023455.1 mouse_genomes_project 17 30888625 30936102 - MGP_AJ_P0046760 Notch3 protein_coding protein_coding MGP_AJ_T0045491.1 MGP_AJ_G0023104.1 mouse_genomes_project 17 6023106 6426107 + MGP_AJ_P0045491 Pde10a protein_coding protein_coding MGP_AJ_T0045492.1 MGP_AJ_G0023104.1 mouse_genomes_project 17 6024474 6485943 + MGP_AJ_P0045492 Pde10a protein_coding protein_coding MGP_AJ_T0045495.1 MGP_AJ_G0023104.1 mouse_genomes_project 17 6301908 6401818 + Pde10a protein_coding retained_intron MGP_AJ_T0045496.1 MGP_AJ_G0023104.1 mouse_genomes_project 17 6301994 6490092 + MGP_AJ_P0045496 Pde10a protein_coding nonsense_mediated_decay MGP_AJ_T0045497.1 MGP_AJ_G0023104.1 mouse_genomes_project 17 6302294 6490100 + MGP_AJ_P0045497 Pde10a protein_coding protein_coding MGP_AJ_T0045498.1 MGP_AJ_G0023104.1 mouse_genomes_project 17 6351625 6485847 + MGP_AJ_P0045498 Pde10a protein_coding protein_coding MGP_AJ_T0045499.1 MGP_AJ_G0023104.1 mouse_genomes_project 17 6395919 6433211 + Pde10a protein_coding processed_transcript MGP_AJ_T0045500.1 MGP_AJ_G0023104.1 mouse_genomes_project 17 6426823 6487735 + MGP_AJ_P0045500 Pde10a protein_coding protein_coding MGP_AJ_T0013298.1 MGP_AJ_G0011393.1 mouse_genomes_project 17 85388187 85410727 + processed_pseudogene processed_pseudogene MGP_AJ_T0047494.1 MGP_AJ_G0023614.1 mouse_genomes_project 17 34974859 34980461 - MGP_AJ_P0047494 2310061I04Rik protein_coding protein_coding MGP_AJ_T0047495.1 MGP_AJ_G0023614.1 mouse_genomes_project 17 34974859 34980150 - MGP_AJ_P0047495 2310061I04Rik protein_coding protein_coding MGP_AJ_T0047496.1 MGP_AJ_G0023614.1 mouse_genomes_project 17 34974865 34978343 - MGP_AJ_P0047496 2310061I04Rik protein_coding protein_coding MGP_AJ_T0047497.1 MGP_AJ_G0023614.1 mouse_genomes_project 17 34974869 34980141 - MGP_AJ_P0047497 2310061I04Rik protein_coding protein_coding MGP_AJ_T0047498.1 MGP_AJ_G0023614.1 mouse_genomes_project 17 34975013 34978950 - MGP_AJ_P0047498 2310061I04Rik protein_coding protein_coding MGP_AJ_T0047499.1 MGP_AJ_G0023614.1 mouse_genomes_project 17 34978073 34980103 - MGP_AJ_P0047499 2310061I04Rik protein_coding protein_coding MGP_AJ_T0047500.1 MGP_AJ_G0023614.1 mouse_genomes_project 17 34978800 34979638 - 2310061I04Rik protein_coding processed_transcript MGP_AJ_T0047501.1 MGP_AJ_G0023614.1 mouse_genomes_project 17 34978949 34980133 - MGP_AJ_P0047501 2310061I04Rik protein_coding protein_coding MGP_AJ_T0047502.1 MGP_AJ_G0023614.1 mouse_genomes_project 17 34979302 34980342 - 2310061I04Rik protein_coding processed_transcript MGP_AJ_T0047062.1 MGP_AJ_G0023524.1 mouse_genomes_project 17 33029419 33038964 + MGP_AJ_P0047062 Tap1 protein_coding protein_coding MGP_AJ_T0047063.1 MGP_AJ_G0023524.1 mouse_genomes_project 17 33029594 33034046 + Tap1 protein_coding retained_intron MGP_AJ_T0047064.1 MGP_AJ_G0023524.1 mouse_genomes_project 17 33029600 33038964 + Tap1 protein_coding retained_intron MGP_AJ_T0047065.1 MGP_AJ_G0023524.1 mouse_genomes_project 17 33029668 33038958 + MGP_AJ_P0047065 Tap1 protein_coding protein_coding MGP_AJ_T0047066.1 MGP_AJ_G0023524.1 mouse_genomes_project 17 33031659 33038959 + Tap1 protein_coding retained_intron MGP_AJ_T0047067.1 MGP_AJ_G0023524.1 mouse_genomes_project 17 33032519 33035307 + MGP_AJ_P0047067 Tap1 protein_coding protein_coding MGP_AJ_T0047068.1 MGP_AJ_G0023524.1 mouse_genomes_project 17 33034807 33038326 + Tap1 protein_coding retained_intron MGP_AJ_T0045684.1 MGP_AJ_G0023160.1 mouse_genomes_project 17 16673376 17269724 + MGP_AJ_P0045684 protein_coding protein_coding MGP_AJ_T0048406.1 MGP_AJ_G0023942.1 mouse_genomes_project 17 66207246 66230411 - MGP_AJ_P0048406 Ndufv2 protein_coding protein_coding MGP_AJ_T0048407.1 MGP_AJ_G0023942.1 mouse_genomes_project 17 66207473 66230441 - MGP_AJ_P0048407 Ndufv2 protein_coding protein_coding MGP_AJ_T0048408.1 MGP_AJ_G0023942.1 mouse_genomes_project 17 66216062 66230455 - MGP_AJ_P0048408 Ndufv2 protein_coding protein_coding MGP_AJ_T0045599.1 MGP_AJ_G0023133.1 mouse_genomes_project 17 12589472 12592225 + MGP_AJ_P0045599 1600012H06Rik protein_coding protein_coding MGP_AJ_T0045600.1 MGP_AJ_G0023133.1 mouse_genomes_project 17 12589518 12592223 + MGP_AJ_P0045600 1600012H06Rik protein_coding protein_coding MGP_AJ_T0045601.1 MGP_AJ_G0023133.1 mouse_genomes_project 17 12589557 12591275 + MGP_AJ_P0045601 1600012H06Rik protein_coding protein_coding MGP_AJ_T0045602.1 MGP_AJ_G0023133.1 mouse_genomes_project 17 12589559 12605847 + 1600012H06Rik protein_coding processed_transcript MGP_AJ_T0046604.1 MGP_AJ_G0023417.1 mouse_genomes_project 17 27667501 27748041 - MGP_AJ_P0046604 Cpne5 protein_coding protein_coding MGP_AJ_T0046605.1 MGP_AJ_G0023417.1 mouse_genomes_project 17 27668867 27695046 - Cpne5 protein_coding processed_transcript MGP_AJ_T0046606.1 MGP_AJ_G0023417.1 mouse_genomes_project 17 27680496 27687626 - Cpne5 protein_coding processed_transcript MGP_AJ_T0046607.1 MGP_AJ_G0023417.1 mouse_genomes_project 17 27699252 27748003 - MGP_AJ_P0046607 Cpne5 protein_coding protein_coding MGP_AJ_T0046608.1 MGP_AJ_G0023417.1 mouse_genomes_project 17 27727607 27747956 - Cpne5 protein_coding retained_intron MGP_AJ_T0102413.1 MGP_AJ_G0040155.1 mouse_genomes_project 17 35337771 35338713 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0013215.1 MGP_AJ_G0011310.1 mouse_genomes_project 17 10469915 10470338 + processed_pseudogene processed_pseudogene MGP_AJ_T0045723.1 MGP_AJ_G0023192.1 mouse_genomes_project 17 19285147 19286268 + MGP_AJ_P0045723 Vmn1r236 protein_coding protein_coding MGP_AJ_T0048367.1 MGP_AJ_G0023930.1 mouse_genomes_project 17 63978424 64260978 + MGP_AJ_P0048367 protein_coding unknown_likely_coding MGP_AJ_T0048368.1 MGP_AJ_G0023930.1 mouse_genomes_project 17 64053861 64258083 + MGP_AJ_P0048368 protein_coding protein_coding MGP_AJ_T0047072.1 MGP_AJ_G0023526.1 mouse_genomes_project 17 33045156 33058110 + MGP_AJ_P0047072 Tap2 protein_coding protein_coding MGP_AJ_T0047073.1 MGP_AJ_G0023526.1 mouse_genomes_project 17 33045710 33046970 + MGP_AJ_P0047073 Tap2 protein_coding protein_coding MGP_AJ_T0047074.1 MGP_AJ_G0023526.1 mouse_genomes_project 17 33046176 33058107 + Tap2 protein_coding retained_intron MGP_AJ_T0047075.1 MGP_AJ_G0023526.1 mouse_genomes_project 17 33046709 33047169 + MGP_AJ_P0047075 Tap2 protein_coding protein_coding MGP_AJ_T0047076.1 MGP_AJ_G0023526.1 mouse_genomes_project 17 33049298 33050953 + Tap2 protein_coding processed_transcript MGP_AJ_T0048527.1 MGP_AJ_G0023972.1 mouse_genomes_project 17 72003123 72082966 + MGP_AJ_P0048527 Clip4 protein_coding protein_coding MGP_AJ_T0048528.1 MGP_AJ_G0023972.1 mouse_genomes_project 17 72004117 72082972 + MGP_AJ_P0048528 Clip4 protein_coding unknown_likely_coding MGP_AJ_T0047969.1 MGP_AJ_G0023787.1 mouse_genomes_project 17 46644847 46659099 + Pex6 protein_coding retained_intron MGP_AJ_T0047970.1 MGP_AJ_G0023787.1 mouse_genomes_project 17 46644847 46659099 + MGP_AJ_P0047970 Pex6 protein_coding protein_coding MGP_AJ_T0047971.1 MGP_AJ_G0023787.1 mouse_genomes_project 17 46644860 46650837 + Pex6 protein_coding processed_transcript MGP_AJ_T0047972.1 MGP_AJ_G0023787.1 mouse_genomes_project 17 46653766 46655310 + Pex6 protein_coding retained_intron MGP_AJ_T0046681.1 MGP_AJ_G0023436.1 mouse_genomes_project 17 29623689 29661340 + MGP_AJ_P0046681 Glp1r protein_coding protein_coding MGP_AJ_T0047556.1 MGP_AJ_G0023625.1 mouse_genomes_project 17 35173056 35180102 + MGP_AJ_P0047556 protein_coding protein_coding MGP_AJ_T0046284.1 MGP_AJ_G0023346.1 mouse_genomes_project 17 24364195 24400717 - MGP_AJ_P0046284 Rab11fip3 protein_coding protein_coding MGP_AJ_T0046285.1 MGP_AJ_G0023346.1 mouse_genomes_project 17 24364195 24454066 - MGP_AJ_P0046285 Rab11fip3 protein_coding protein_coding MGP_AJ_T0046286.1 MGP_AJ_G0023346.1 mouse_genomes_project 17 24364204 24454298 - MGP_AJ_P0046286 Rab11fip3 protein_coding protein_coding MGP_AJ_T0046287.1 MGP_AJ_G0023346.1 mouse_genomes_project 17 24378232 24400675 - Rab11fip3 protein_coding retained_intron MGP_AJ_T0046288.1 MGP_AJ_G0023346.1 mouse_genomes_project 17 24392711 24397327 - MGP_AJ_P0046288 Rab11fip3 protein_coding protein_coding MGP_AJ_T0046289.1 MGP_AJ_G0023346.1 mouse_genomes_project 17 24415319 24454124 - Rab11fip3 protein_coding processed_transcript MGP_AJ_T0045685.1 MGP_AJ_G0023161.1 mouse_genomes_project 17 16674214 16996588 + MGP_AJ_P0045685 protein_coding protein_coding MGP_AJ_T0045687.1 MGP_AJ_G0023161.1 mouse_genomes_project 17 16872571 17129678 + MGP_AJ_P0045687 protein_coding protein_coding MGP_AJ_T0048811.1 MGP_AJ_G0024076.1 mouse_genomes_project 17 91618481 91619380 + MGP_AJ_P0048811 Gm10308 protein_coding protein_coding MGP_AJ_T0047663.1 MGP_AJ_G0023663.1 mouse_genomes_project 17 36494431 36495511 - MGP_AJ_P0047663 Olfr98 protein_coding protein_coding MGP_AJ_T0046701.1 MGP_AJ_G0023446.1 mouse_genomes_project 17 30127231 30221829 + MGP_AJ_P0046701 Pde9a protein_coding protein_coding MGP_AJ_T0046702.1 MGP_AJ_G0023446.1 mouse_genomes_project 17 30127246 30221675 + MGP_AJ_P0046702 Pde9a protein_coding nonsense_mediated_decay MGP_AJ_T0046703.1 MGP_AJ_G0023446.1 mouse_genomes_project 17 30127246 30221675 + MGP_AJ_P0046703 Pde9a protein_coding nonsense_mediated_decay MGP_AJ_T0046704.1 MGP_AJ_G0023446.1 mouse_genomes_project 17 30127246 30221675 + MGP_AJ_P0046704 Pde9a protein_coding protein_coding MGP_AJ_T0046705.1 MGP_AJ_G0023446.1 mouse_genomes_project 17 30127251 30221678 + MGP_AJ_P0046705 Pde9a protein_coding protein_coding MGP_AJ_T0046706.1 MGP_AJ_G0023446.1 mouse_genomes_project 17 30127259 30221600 + MGP_AJ_P0046706 Pde9a protein_coding nonsense_mediated_decay MGP_AJ_T0046707.1 MGP_AJ_G0023446.1 mouse_genomes_project 17 30127271 30221678 + MGP_AJ_P0046707 Pde9a protein_coding nonsense_mediated_decay MGP_AJ_T0046708.1 MGP_AJ_G0023446.1 mouse_genomes_project 17 30127273 30217380 + Pde9a protein_coding retained_intron MGP_AJ_T0046709.1 MGP_AJ_G0023446.1 mouse_genomes_project 17 30127291 30199742 + MGP_AJ_P0046709 Pde9a protein_coding nonsense_mediated_decay MGP_AJ_T0046710.1 MGP_AJ_G0023446.1 mouse_genomes_project 17 30175406 30203753 + MGP_AJ_P0046710 Pde9a protein_coding protein_coding MGP_AJ_T0046711.1 MGP_AJ_G0023446.1 mouse_genomes_project 17 30187255 30204815 + Pde9a protein_coding retained_intron MGP_AJ_T0046712.1 MGP_AJ_G0023446.1 mouse_genomes_project 17 30197920 30206325 + Pde9a protein_coding retained_intron MGP_AJ_T0046713.1 MGP_AJ_G0023446.1 mouse_genomes_project 17 30206252 30221660 + MGP_AJ_P0046713 Pde9a protein_coding protein_coding MGP_AJ_T0046714.1 MGP_AJ_G0023446.1 mouse_genomes_project 17 30216625 30221625 + Pde9a protein_coding processed_transcript MGP_AJ_T0048538.1 MGP_AJ_G0023977.1 mouse_genomes_project 17 73552599 73645649 - MGP_AJ_P0048538 Capn13 protein_coding protein_coding MGP_AJ_T0045818.1 MGP_AJ_G0023231.1 mouse_genomes_project 17 22039442 22048426 - MGP_AJ_P0045818 Flywch2 protein_coding protein_coding MGP_AJ_T0045819.1 MGP_AJ_G0023231.1 mouse_genomes_project 17 22039485 22042320 - MGP_AJ_P0045819 Flywch2 protein_coding nonsense_mediated_decay MGP_AJ_T0045820.1 MGP_AJ_G0023231.1 mouse_genomes_project 17 22039518 22048397 - MGP_AJ_P0045820 Flywch2 protein_coding nonsense_mediated_decay MGP_AJ_T0046109.1 MGP_AJ_G0023306.1 mouse_genomes_project 17 23613260 23614638 - Baiap3 protein_coding retained_intron MGP_AJ_T0046110.1 MGP_AJ_G0023306.1 mouse_genomes_project 17 23613260 23626955 - MGP_AJ_P0046110 Baiap3 protein_coding protein_coding MGP_AJ_T0046111.1 MGP_AJ_G0023306.1 mouse_genomes_project 17 23613959 23624533 - MGP_AJ_P0046111 Baiap3 protein_coding protein_coding MGP_AJ_T0046112.1 MGP_AJ_G0023306.1 mouse_genomes_project 17 23613974 23614916 - MGP_AJ_P0046112 Baiap3 protein_coding protein_coding MGP_AJ_T0046113.1 MGP_AJ_G0023306.1 mouse_genomes_project 17 23613983 23626872 - MGP_AJ_P0046113 Baiap3 protein_coding protein_coding MGP_AJ_T0046114.1 MGP_AJ_G0023306.1 mouse_genomes_project 17 23614126 23626872 - MGP_AJ_P0046114 Baiap3 protein_coding protein_coding MGP_AJ_T0046115.1 MGP_AJ_G0023306.1 mouse_genomes_project 17 23615395 23616389 - Baiap3 protein_coding retained_intron MGP_AJ_T0046116.1 MGP_AJ_G0023306.1 mouse_genomes_project 17 23616618 23618716 - Baiap3 protein_coding retained_intron MGP_AJ_T0046117.1 MGP_AJ_G0023306.1 mouse_genomes_project 17 23621601 23626865 - Baiap3 protein_coding retained_intron MGP_AJ_T0013256.1 MGP_AJ_G0011351.1 mouse_genomes_project 17 37182001 37185359 - processed_pseudogene processed_pseudogene MGP_AJ_T0010181.1 MGP_AJ_G0008303.1 mouse_genomes_project 17 24204267 24204331 - Mir3082 miRNA miRNA MGP_AJ_T0102407.1 MGP_AJ_G0040149.1 mouse_genomes_project 17 33424304 33444715 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0013236.1 MGP_AJ_G0011331.1 mouse_genomes_project 17 33928330 33928707 - processed_pseudogene processed_pseudogene MGP_AJ_T0048200.1 MGP_AJ_G0023857.1 mouse_genomes_project 17 55711204 55782117 - MGP_AJ_P0048200 Pot1b protein_coding protein_coding MGP_AJ_T0048519.1 MGP_AJ_G0023969.1 mouse_genomes_project 17 71835958 71879751 + MGP_AJ_P0048519 Wdr43 protein_coding protein_coding MGP_AJ_T0101967.1 MGP_AJ_G0039803.1 mouse_genomes_project 17 32744092 32744931 + transcribed_unprocessed_pseudogene processed_transcript MGP_AJ_T0101968.1 MGP_AJ_G0039803.1 mouse_genomes_project 17 32744254 32745314 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_AJ_T0006913.1 MGP_AJ_G0005688.1 mouse_genomes_project 17 21816141 21817686 + Gm26695 lincRNA lincRNA MGP_AJ_T0047874.1 MGP_AJ_G0023761.1 mouse_genomes_project 17 46055999 46061382 - MGP_AJ_P0047874 Mad2l1bp protein_coding protein_coding MGP_AJ_T0100937.1 MGP_AJ_G0038903.1 mouse_genomes_project 17 82587617 82587746 - Gm22386 snoRNA snoRNA MGP_AJ_T0013224.1 MGP_AJ_G0011319.1 mouse_genomes_project 17 23697567 23699377 - processed_pseudogene processed_pseudogene MGP_AJ_T0046002.1 MGP_AJ_G0023280.1 mouse_genomes_project 17 23092492 23101891 + MGP_AJ_P0046002 Rpl3l protein_coding unknown_likely_coding MGP_AJ_T0046003.1 MGP_AJ_G0023280.1 mouse_genomes_project 17 23092664 23101978 + MGP_AJ_P0046003 Rpl3l protein_coding protein_coding MGP_AJ_T0046004.1 MGP_AJ_G0023280.1 mouse_genomes_project 17 23093018 23099200 + MGP_AJ_P0046004 Rpl3l protein_coding protein_coding MGP_AJ_T0046005.1 MGP_AJ_G0023280.1 mouse_genomes_project 17 23098519 23101978 + MGP_AJ_P0046005 Rpl3l protein_coding protein_coding MGP_AJ_T0047671.1 MGP_AJ_G0023670.1 mouse_genomes_project 17 36681299 36682337 + MGP_AJ_P0047671 Olfr108 protein_coding protein_coding MGP_AJ_T0011419.1 MGP_AJ_G0009541.1 mouse_genomes_project 17 15434104 15434390 + Gm23837 misc_RNA misc_RNA MGP_AJ_T0047342.1 MGP_AJ_G0023582.1 mouse_genomes_project 17 34102090 34105137 - MGP_AJ_P0047342 Apom protein_coding protein_coding MGP_AJ_T0048209.1 MGP_AJ_G0023865.1 mouse_genomes_project 17 56057702 56068072 + MGP_AJ_P0048209 Fsd1 protein_coding protein_coding MGP_AJ_T0006938.1 MGP_AJ_G0005706.1 mouse_genomes_project 17 30880605 30909563 + Gm17276 lincRNA lincRNA MGP_AJ_T0045925.1 MGP_AJ_G0023261.1 mouse_genomes_project 17 22826200 22827319 + MGP_AJ_P0045925 Pgp protein_coding protein_coding MGP_AJ_T0047677.1 MGP_AJ_G0023675.1 mouse_genomes_project 17 36808067 36809058 - Olfr112 protein_coding processed_transcript MGP_AJ_T0047678.1 MGP_AJ_G0023675.1 mouse_genomes_project 17 36808078 36811934 - MGP_AJ_P0047678 Olfr112 protein_coding protein_coding MGP_AJ_T0047679.1 MGP_AJ_G0023675.1 mouse_genomes_project 17 36808249 36811546 - MGP_AJ_P0047679 Olfr112 protein_coding protein_coding MGP_AJ_T0046613.1 MGP_AJ_G0023419.1 mouse_genomes_project 17 27795976 27837361 + MGP_AJ_P0046613 BC004004 protein_coding protein_coding MGP_AJ_T0046614.1 MGP_AJ_G0023419.1 mouse_genomes_project 17 27796031 27836001 + MGP_AJ_P0046614 BC004004 protein_coding protein_coding MGP_AJ_T0046615.1 MGP_AJ_G0023419.1 mouse_genomes_project 17 27796139 27819873 + BC004004 protein_coding retained_intron MGP_AJ_T0046616.1 MGP_AJ_G0023419.1 mouse_genomes_project 17 27801084 27836005 + MGP_AJ_P0046616 BC004004 protein_coding protein_coding MGP_AJ_T0046617.1 MGP_AJ_G0023419.1 mouse_genomes_project 17 27832847 27836005 + BC004004 protein_coding processed_transcript MGP_AJ_T0046638.1 MGP_AJ_G0023425.1 mouse_genomes_project 17 28090941 28119339 - MGP_AJ_P0046638 Tmem217 protein_coding protein_coding MGP_AJ_T0046639.1 MGP_AJ_G0023425.1 mouse_genomes_project 17 28090941 28119339 - MGP_AJ_P0046639 Tmem217 protein_coding protein_coding MGP_AJ_T0010221.1 MGP_AJ_G0008343.1 mouse_genomes_project 17 65613823 65613964 + Gm25731 miRNA miRNA MGP_AJ_T0047337.1 MGP_AJ_G0023580.1 mouse_genomes_project 17 34095149 34097017 + MGP_AJ_P0047337 Gpank1 protein_coding protein_coding MGP_AJ_T0047338.1 MGP_AJ_G0023580.1 mouse_genomes_project 17 34095177 34098122 + MGP_AJ_P0047338 Gpank1 protein_coding protein_coding MGP_AJ_T0047339.1 MGP_AJ_G0023580.1 mouse_genomes_project 17 34095355 34096038 + Gpank1 protein_coding processed_transcript MGP_AJ_T0003790.1 MGP_AJ_G0003403.1 mouse_genomes_project 17 86712168 86714186 - 2010106C02Rik antisense antisense MGP_AJ_T0045636.1 MGP_AJ_G0023142.1 mouse_genomes_project 17 13107303 13116082 - MGP_AJ_P0045636 Pdcd2 protein_coding protein_coding MGP_AJ_T0045637.1 MGP_AJ_G0023142.1 mouse_genomes_project 17 13109670 13116102 - MGP_AJ_P0045637 Pdcd2 protein_coding protein_coding MGP_AJ_T0045638.1 MGP_AJ_G0023142.1 mouse_genomes_project 17 13109688 13110239 - Pdcd2 protein_coding retained_intron MGP_AJ_T0045639.1 MGP_AJ_G0023142.1 mouse_genomes_project 17 13110798 13115885 - Pdcd2 protein_coding retained_intron MGP_AJ_T0045640.1 MGP_AJ_G0023142.1 mouse_genomes_project 17 13110886 13115787 - Pdcd2 protein_coding retained_intron MGP_AJ_T0003778.1 MGP_AJ_G0003393.1 mouse_genomes_project 17 49899522 49900766 - Gm16554 antisense antisense MGP_AJ_T0047916.1 MGP_AJ_G0023770.1 mouse_genomes_project 17 46213241 46235401 - MGP_AJ_P0047916 Abcc10 protein_coding protein_coding MGP_AJ_T0047917.1 MGP_AJ_G0023770.1 mouse_genomes_project 17 46213250 46235354 - MGP_AJ_P0047917 Abcc10 protein_coding nonsense_mediated_decay MGP_AJ_T0047918.1 MGP_AJ_G0023770.1 mouse_genomes_project 17 46213253 46235357 - MGP_AJ_P0047918 Abcc10 protein_coding protein_coding MGP_AJ_T0047919.1 MGP_AJ_G0023770.1 mouse_genomes_project 17 46213441 46233149 - MGP_AJ_P0047919 Abcc10 protein_coding protein_coding MGP_AJ_T0047920.1 MGP_AJ_G0023770.1 mouse_genomes_project 17 46223962 46231015 - MGP_AJ_P0047920 Abcc10 protein_coding protein_coding MGP_AJ_T0047921.1 MGP_AJ_G0023770.1 mouse_genomes_project 17 46230240 46235375 - Abcc10 protein_coding retained_intron MGP_AJ_T0047922.1 MGP_AJ_G0023770.1 mouse_genomes_project 17 46231939 46235730 - Abcc10 protein_coding processed_transcript MGP_AJ_T0003771.1 MGP_AJ_G0003388.1 mouse_genomes_project 17 45492841 45495098 + Gm17080 antisense antisense MGP_AJ_T0046691.1 MGP_AJ_G0023442.1 mouse_genomes_project 17 29909962 29928442 - MGP_AJ_P0046691 Tmprss3 protein_coding protein_coding MGP_AJ_T0046692.1 MGP_AJ_G0023442.1 mouse_genomes_project 17 29909962 29929668 - MGP_AJ_P0046692 Tmprss3 protein_coding protein_coding MGP_AJ_T0011428.1 MGP_AJ_G0009550.1 mouse_genomes_project 17 46324314 46324638 + Gm23037 misc_RNA misc_RNA MGP_AJ_T0047659.1 MGP_AJ_G0023659.1 mouse_genomes_project 17 36428438 36429743 - MGP_AJ_P0047659 Olfr94 protein_coding protein_coding MGP_AJ_T0045778.1 MGP_AJ_G0023218.1 mouse_genomes_project 17 21862499 21872611 + MGP_AJ_P0045778 Zscan10 protein_coding protein_coding MGP_AJ_T0045779.1 MGP_AJ_G0023218.1 mouse_genomes_project 17 21862499 21872618 + MGP_AJ_P0045779 Zscan10 protein_coding protein_coding MGP_AJ_T0045780.1 MGP_AJ_G0023218.1 mouse_genomes_project 17 21862499 21872611 + MGP_AJ_P0045780 Zscan10 protein_coding protein_coding MGP_AJ_T0045781.1 MGP_AJ_G0023218.1 mouse_genomes_project 17 21862505 21872421 + MGP_AJ_P0045781 Zscan10 protein_coding protein_coding MGP_AJ_T0045782.1 MGP_AJ_G0023218.1 mouse_genomes_project 17 21862505 21872421 + MGP_AJ_P0045782 Zscan10 protein_coding protein_coding MGP_AJ_T0045783.1 MGP_AJ_G0023218.1 mouse_genomes_project 17 21862584 21871300 + MGP_AJ_P0045783 Zscan10 protein_coding protein_coding MGP_AJ_T0045784.1 MGP_AJ_G0023218.1 mouse_genomes_project 17 21867126 21868816 + Zscan10 protein_coding retained_intron MGP_AJ_T0045785.1 MGP_AJ_G0023218.1 mouse_genomes_project 17 21867150 21871296 + MGP_AJ_P0045785 Zscan10 protein_coding protein_coding MGP_AJ_T0045786.1 MGP_AJ_G0023218.1 mouse_genomes_project 17 21867159 21871296 + MGP_AJ_P0045786 Zscan10 protein_coding nonsense_mediated_decay MGP_AJ_T0045787.1 MGP_AJ_G0023218.1 mouse_genomes_project 17 21867159 21871297 + MGP_AJ_P0045787 Zscan10 protein_coding protein_coding MGP_AJ_T0045788.1 MGP_AJ_G0023218.1 mouse_genomes_project 17 21867160 21871297 + MGP_AJ_P0045788 Zscan10 protein_coding protein_coding MGP_AJ_T0045789.1 MGP_AJ_G0023218.1 mouse_genomes_project 17 21869135 21871296 + Zscan10 protein_coding retained_intron MGP_AJ_T0013247.1 MGP_AJ_G0011342.1 mouse_genomes_project 17 35627215 35627788 - processed_pseudogene processed_pseudogene MGP_AJ_T0006920.1 MGP_AJ_G0005693.1 mouse_genomes_project 17 25264666 25290367 - Gm17382 lincRNA lincRNA MGP_AJ_T0047768.1 MGP_AJ_G0023738.1 mouse_genomes_project 17 43695567 43935093 + MGP_AJ_P0047768 Rcan2 protein_coding protein_coding MGP_AJ_T0047769.1 MGP_AJ_G0023738.1 mouse_genomes_project 17 43847641 43932998 + MGP_AJ_P0047769 Rcan2 protein_coding protein_coding MGP_AJ_T0047770.1 MGP_AJ_G0023738.1 mouse_genomes_project 17 43847859 43935093 + MGP_AJ_P0047770 Rcan2 protein_coding protein_coding MGP_AJ_T0100933.1 MGP_AJ_G0038899.1 mouse_genomes_project 17 71860597 71860675 + Snord53 snoRNA snoRNA MGP_AJ_T0047741.1 MGP_AJ_G0023726.1 mouse_genomes_project 17 42530954 42566432 - MGP_AJ_P0047741 Adgrf4 protein_coding protein_coding MGP_AJ_T0047742.1 MGP_AJ_G0023726.1 mouse_genomes_project 17 42530957 42566432 - MGP_AJ_P0047742 Adgrf4 protein_coding protein_coding MGP_AJ_T0047743.1 MGP_AJ_G0023726.1 mouse_genomes_project 17 42531153 42566410 - MGP_AJ_P0047743 Adgrf4 protein_coding protein_coding MGP_AJ_T0047744.1 MGP_AJ_G0023726.1 mouse_genomes_project 17 42546389 42566421 - MGP_AJ_P0047744 Adgrf4 protein_coding protein_coding MGP_AJ_T0046201.1 MGP_AJ_G0023330.1 mouse_genomes_project 17 24196531 24201635 + MGP_AJ_P0046201 Wdr24 protein_coding protein_coding MGP_AJ_T0046202.1 MGP_AJ_G0023330.1 mouse_genomes_project 17 24196553 24201626 + Wdr24 protein_coding retained_intron MGP_AJ_T0046203.1 MGP_AJ_G0023330.1 mouse_genomes_project 17 24197434 24198576 + Wdr24 protein_coding processed_transcript MGP_AJ_T0046204.1 MGP_AJ_G0023330.1 mouse_genomes_project 17 24197566 24199249 + Wdr24 protein_coding retained_intron MGP_AJ_T0048413.1 MGP_AJ_G0023945.1 mouse_genomes_project 17 66478013 66590321 - MGP_AJ_P0048413 Mtcl1 protein_coding protein_coding MGP_AJ_T0048414.1 MGP_AJ_G0023945.1 mouse_genomes_project 17 66478017 66590321 - MGP_AJ_P0048414 Mtcl1 protein_coding protein_coding MGP_AJ_T0048415.1 MGP_AJ_G0023945.1 mouse_genomes_project 17 66478019 66526800 - MGP_AJ_P0048415 Mtcl1 protein_coding protein_coding MGP_AJ_T0048416.1 MGP_AJ_G0023945.1 mouse_genomes_project 17 66478709 66579642 - MGP_AJ_P0048416 Mtcl1 protein_coding protein_coding MGP_AJ_T0048417.1 MGP_AJ_G0023945.1 mouse_genomes_project 17 66484957 66487571 - Mtcl1 protein_coding retained_intron MGP_AJ_T0048418.1 MGP_AJ_G0023945.1 mouse_genomes_project 17 66488991 66519919 - Mtcl1 protein_coding retained_intron MGP_AJ_T0048419.1 MGP_AJ_G0023945.1 mouse_genomes_project 17 66495224 66503719 - Mtcl1 protein_coding processed_transcript MGP_AJ_T0048420.1 MGP_AJ_G0023945.1 mouse_genomes_project 17 66495389 66519404 - Mtcl1 protein_coding processed_transcript MGP_AJ_T0048421.1 MGP_AJ_G0023945.1 mouse_genomes_project 17 66499040 66519018 - Mtcl1 protein_coding retained_intron MGP_AJ_T0048422.1 MGP_AJ_G0023945.1 mouse_genomes_project 17 66507280 66515636 - Mtcl1 protein_coding processed_transcript MGP_AJ_T0048423.1 MGP_AJ_G0023945.1 mouse_genomes_project 17 66526607 66588940 - Mtcl1 protein_coding retained_intron MGP_AJ_T0100934.1 MGP_AJ_G0038900.1 mouse_genomes_project 17 71861302 71861378 + Gm22858 snoRNA snoRNA MGP_AJ_T0047091.1 MGP_AJ_G0023533.1 mouse_genomes_project 17 33197660 33212107 + MGP_AJ_P0047091 Btnl2 protein_coding protein_coding MGP_AJ_T0047092.1 MGP_AJ_G0023533.1 mouse_genomes_project 17 33197660 33212106 + MGP_AJ_P0047092 Btnl2 protein_coding protein_coding MGP_AJ_T0102375.1 MGP_AJ_G0040117.1 mouse_genomes_project 17 17104359 17129447 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0006998.1 MGP_AJ_G0005751.1 mouse_genomes_project 17 92078735 92119573 + Gm15404 lincRNA lincRNA MGP_AJ_T0045705.1 MGP_AJ_G0023180.1 mouse_genomes_project 17 18595838 18596735 + MGP_AJ_P0045705 Vmn1r226 protein_coding protein_coding MGP_AJ_T0048261.1 MGP_AJ_G0023886.1 mouse_genomes_project 17 56671450 56675002 - MGP_AJ_P0048261 Safb2 protein_coding protein_coding MGP_AJ_T0048262.1 MGP_AJ_G0023886.1 mouse_genomes_project 17 56671458 56675053 - MGP_AJ_P0048262 Safb2 protein_coding protein_coding MGP_AJ_T0048263.1 MGP_AJ_G0023886.1 mouse_genomes_project 17 56673424 56695322 - MGP_AJ_P0048263 Safb2 protein_coding protein_coding MGP_AJ_T0048264.1 MGP_AJ_G0023886.1 mouse_genomes_project 17 56673424 56695249 - MGP_AJ_P0048264 Safb2 protein_coding nonsense_mediated_decay MGP_AJ_T0048265.1 MGP_AJ_G0023886.1 mouse_genomes_project 17 56673424 56677501 - MGP_AJ_P0048265 Safb2 protein_coding protein_coding MGP_AJ_T0048266.1 MGP_AJ_G0023886.1 mouse_genomes_project 17 56673434 56682983 - Safb2 protein_coding processed_transcript MGP_AJ_T0048267.1 MGP_AJ_G0023886.1 mouse_genomes_project 17 56673790 56677504 - MGP_AJ_P0048267 Safb2 protein_coding protein_coding MGP_AJ_T0048268.1 MGP_AJ_G0023886.1 mouse_genomes_project 17 56676482 56681924 - MGP_AJ_P0048268 Safb2 protein_coding protein_coding MGP_AJ_T0048269.1 MGP_AJ_G0023886.1 mouse_genomes_project 17 56678018 56679920 - Safb2 protein_coding retained_intron MGP_AJ_T0048270.1 MGP_AJ_G0023886.1 mouse_genomes_project 17 56679380 56685582 - Safb2 protein_coding retained_intron MGP_AJ_T0048271.1 MGP_AJ_G0023886.1 mouse_genomes_project 17 56679476 56695261 - MGP_AJ_P0048271 Safb2 protein_coding nonsense_mediated_decay MGP_AJ_T0048272.1 MGP_AJ_G0023886.1 mouse_genomes_project 17 56680566 56686004 - Safb2 protein_coding retained_intron MGP_AJ_T0048273.1 MGP_AJ_G0023886.1 mouse_genomes_project 17 56681511 56682163 - Safb2 protein_coding retained_intron MGP_AJ_T0048274.1 MGP_AJ_G0023886.1 mouse_genomes_project 17 56681753 56695299 - MGP_AJ_P0048274 Safb2 protein_coding nonsense_mediated_decay MGP_AJ_T0048275.1 MGP_AJ_G0023886.1 mouse_genomes_project 17 56687067 56693783 - Safb2 protein_coding retained_intron MGP_AJ_T0048276.1 MGP_AJ_G0023886.1 mouse_genomes_project 17 56687196 56695038 - Safb2 protein_coding retained_intron MGP_AJ_T0048277.1 MGP_AJ_G0023886.1 mouse_genomes_project 17 56689609 56695248 - Safb2 protein_coding retained_intron MGP_AJ_T0048315.1 MGP_AJ_G0023907.1 mouse_genomes_project 17 57142228 57152723 - MGP_AJ_P0048315 Khsrp protein_coding protein_coding MGP_AJ_T0101750.1 MGP_AJ_G0039680.1 mouse_genomes_project 17 71057694 71058204 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0048681.1 MGP_AJ_G0024037.1 mouse_genomes_project 17 84577503 84853110 - MGP_AJ_P0048681 Thada protein_coding protein_coding MGP_AJ_T0048207.1 MGP_AJ_G0023864.1 mouse_genomes_project 17 56041647 56047798 + MGP_AJ_P0048207 Shd protein_coding protein_coding MGP_AJ_T0048208.1 MGP_AJ_G0023864.1 mouse_genomes_project 17 56041689 56047585 + MGP_AJ_P0048208 Shd protein_coding unknown_likely_coding MGP_AJ_T0047365.1 MGP_AJ_G0023585.1 mouse_genomes_project 17 34143116 34143984 - Aif1 protein_coding retained_intron MGP_AJ_T0047366.1 MGP_AJ_G0023585.1 mouse_genomes_project 17 34143116 34144945 - MGP_AJ_P0047366 Aif1 protein_coding protein_coding MGP_AJ_T0047367.1 MGP_AJ_G0023585.1 mouse_genomes_project 17 34143117 34148130 - MGP_AJ_P0047367 Aif1 protein_coding protein_coding MGP_AJ_T0047368.1 MGP_AJ_G0023585.1 mouse_genomes_project 17 34143119 34145404 - MGP_AJ_P0047368 Aif1 protein_coding protein_coding MGP_AJ_T0047369.1 MGP_AJ_G0023585.1 mouse_genomes_project 17 34143121 34148197 - Aif1 protein_coding processed_transcript MGP_AJ_T0047370.1 MGP_AJ_G0023585.1 mouse_genomes_project 17 34143648 34144757 - MGP_AJ_P0047370 Aif1 protein_coding protein_coding MGP_AJ_T0047371.1 MGP_AJ_G0023585.1 mouse_genomes_project 17 34144655 34148130 - Aif1 protein_coding retained_intron MGP_AJ_T0010185.1 MGP_AJ_G0008307.1 mouse_genomes_project 17 25379331 25379395 - Mir3083 miRNA miRNA MGP_AJ_T0006902.1 MGP_AJ_G0005678.1 mouse_genomes_project 17 9810581 9818695 + 4732491K20Rik lincRNA lincRNA MGP_AJ_T0047717.1 MGP_AJ_G0023707.1 mouse_genomes_project 17 38677070 38860904 + MGP_AJ_P0047717 protein_coding protein_coding MGP_AJ_T0045735.1 MGP_AJ_G0023201.1 mouse_genomes_project 17 19645529 19645788 + MGP_AJ_P0045735 Gm10509 protein_coding protein_coding MGP_AJ_T0046254.1 MGP_AJ_G0023340.1 mouse_genomes_project 17 24254608 24292299 - MGP_AJ_P0046254 Rab40c protein_coding protein_coding MGP_AJ_T0046255.1 MGP_AJ_G0023340.1 mouse_genomes_project 17 24254608 24292289 - MGP_AJ_P0046255 Rab40c protein_coding protein_coding MGP_AJ_T0046256.1 MGP_AJ_G0023340.1 mouse_genomes_project 17 24254608 24292361 - MGP_AJ_P0046256 Rab40c protein_coding protein_coding MGP_AJ_T0046257.1 MGP_AJ_G0023340.1 mouse_genomes_project 17 24254608 24292203 - MGP_AJ_P0046257 Rab40c protein_coding nonsense_mediated_decay MGP_AJ_T0046258.1 MGP_AJ_G0023340.1 mouse_genomes_project 17 24254611 24286279 - Rab40c protein_coding processed_transcript MGP_AJ_T0046259.1 MGP_AJ_G0023340.1 mouse_genomes_project 17 24256122 24292153 - MGP_AJ_P0046259 Rab40c protein_coding protein_coding MGP_AJ_T0046260.1 MGP_AJ_G0023340.1 mouse_genomes_project 17 24256133 24292374 - MGP_AJ_P0046260 Rab40c protein_coding protein_coding MGP_AJ_T0046261.1 MGP_AJ_G0023340.1 mouse_genomes_project 17 24257257 24292337 - Rab40c protein_coding processed_transcript MGP_AJ_T0046262.1 MGP_AJ_G0023340.1 mouse_genomes_project 17 24257576 24292358 - MGP_AJ_P0046262 Rab40c protein_coding protein_coding MGP_AJ_T0006991.1 MGP_AJ_G0005747.1 mouse_genomes_project 17 87281176 87281863 + Gm29168 lincRNA lincRNA MGP_AJ_T0048611.1 MGP_AJ_G0024005.1 mouse_genomes_project 17 79288738 79361002 - MGP_AJ_P0048611 Prkd3 protein_coding protein_coding MGP_AJ_T0048612.1 MGP_AJ_G0024005.1 mouse_genomes_project 17 79288738 79353389 - MGP_AJ_P0048612 Prkd3 protein_coding protein_coding MGP_AJ_T0048613.1 MGP_AJ_G0024005.1 mouse_genomes_project 17 79289878 79361002 - MGP_AJ_P0048613 Prkd3 protein_coding protein_coding MGP_AJ_T0048614.1 MGP_AJ_G0024005.1 mouse_genomes_project 17 79290980 79348450 - MGP_AJ_P0048614 Prkd3 protein_coding protein_coding MGP_AJ_T0048615.1 MGP_AJ_G0024005.1 mouse_genomes_project 17 79308978 79324750 - Prkd3 protein_coding retained_intron MGP_AJ_T0048616.1 MGP_AJ_G0024005.1 mouse_genomes_project 17 79311161 79361002 - MGP_AJ_P0048616 Prkd3 protein_coding protein_coding MGP_AJ_T0048617.1 MGP_AJ_G0024005.1 mouse_genomes_project 17 79311630 79348633 - Prkd3 protein_coding processed_transcript MGP_AJ_T0048618.1 MGP_AJ_G0024005.1 mouse_genomes_project 17 79350203 79360963 - Prkd3 protein_coding retained_intron MGP_AJ_T0045493.1 MGP_AJ_G0023105.1 mouse_genomes_project 17 6064109 6065208 - Gm17087 protein_coding translated_processed_pseudogene MGP_AJ_T0045494.1 MGP_AJ_G0023105.1 mouse_genomes_project 17 6064656 6065127 - MGP_AJ_P0045494 Gm17087 protein_coding protein_coding MGP_AJ_T0047641.1 MGP_AJ_G0023652.1 mouse_genomes_project 17 36192331 36205332 - MGP_AJ_P0047641 Mog protein_coding protein_coding MGP_AJ_T0047642.1 MGP_AJ_G0023652.1 mouse_genomes_project 17 36193089 36205133 - MGP_AJ_P0047642 Mog protein_coding protein_coding MGP_AJ_T0102379.1 MGP_AJ_G0040121.1 mouse_genomes_project 17 17822517 17823416 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0006918.1 MGP_AJ_G0005691.1 mouse_genomes_project 17 24167692 24339995 + lincRNA lincRNA MGP_AJ_T0047197.1 MGP_AJ_G0023553.1 mouse_genomes_project 17 33809483 33820395 - Skiv2l protein_coding retained_intron MGP_AJ_T0047198.1 MGP_AJ_G0023553.1 mouse_genomes_project 17 33809499 33820395 - MGP_AJ_P0047198 Skiv2l protein_coding protein_coding MGP_AJ_T0047199.1 MGP_AJ_G0023553.1 mouse_genomes_project 17 33809504 33820377 - Skiv2l protein_coding retained_intron MGP_AJ_T0047200.1 MGP_AJ_G0023553.1 mouse_genomes_project 17 33809556 33820383 - Skiv2l protein_coding retained_intron MGP_AJ_T0047201.1 MGP_AJ_G0023553.1 mouse_genomes_project 17 33810789 33811388 - Skiv2l protein_coding retained_intron MGP_AJ_T0047202.1 MGP_AJ_G0023553.1 mouse_genomes_project 17 33810861 33813083 - MGP_AJ_P0047202 Skiv2l protein_coding protein_coding MGP_AJ_T0047203.1 MGP_AJ_G0023553.1 mouse_genomes_project 17 33811615 33814667 - Skiv2l protein_coding retained_intron MGP_AJ_T0047204.1 MGP_AJ_G0023553.1 mouse_genomes_project 17 33815237 33817378 - Skiv2l protein_coding retained_intron MGP_AJ_T0047205.1 MGP_AJ_G0023553.1 mouse_genomes_project 17 33815314 33816850 - Skiv2l protein_coding retained_intron MGP_AJ_T0047206.1 MGP_AJ_G0023553.1 mouse_genomes_project 17 33815450 33816242 - Skiv2l protein_coding retained_intron MGP_AJ_T0047207.1 MGP_AJ_G0023553.1 mouse_genomes_project 17 33816732 33820380 - MGP_AJ_P0047207 Skiv2l protein_coding nonsense_mediated_decay MGP_AJ_T0045966.1 MGP_AJ_G0023269.1 mouse_genomes_project 17 22990499 22996640 + MGP_AJ_P0045966 Nthl1 protein_coding protein_coding MGP_AJ_T0045831.1 MGP_AJ_G0023233.1 mouse_genomes_project 17 22095785 22100090 - MGP_AJ_P0045831 Tceb2 protein_coding protein_coding MGP_AJ_T0047340.1 MGP_AJ_G0023581.1 mouse_genomes_project 17 34099662 34100203 + D17H6S53E protein_coding retained_intron MGP_AJ_T0047341.1 MGP_AJ_G0023581.1 mouse_genomes_project 17 34099675 34101949 + MGP_AJ_P0047341 D17H6S53E protein_coding protein_coding MGP_AJ_T0046301.1 MGP_AJ_G0023351.1 mouse_genomes_project 17 24529233 24587023 + MGP_AJ_P0046301 Axin1 protein_coding protein_coding MGP_AJ_T0046302.1 MGP_AJ_G0023351.1 mouse_genomes_project 17 24529373 24586453 + MGP_AJ_P0046302 Axin1 protein_coding protein_coding MGP_AJ_T0046303.1 MGP_AJ_G0023351.1 mouse_genomes_project 17 24529495 24586506 + MGP_AJ_P0046303 Axin1 protein_coding protein_coding MGP_AJ_T0046304.1 MGP_AJ_G0023351.1 mouse_genomes_project 17 24533892 24575561 + MGP_AJ_P0046304 Axin1 protein_coding protein_coding MGP_AJ_T0046305.1 MGP_AJ_G0023351.1 mouse_genomes_project 17 24579364 24580007 + Axin1 protein_coding retained_intron MGP_AJ_T0045544.1 MGP_AJ_G0023121.1 mouse_genomes_project 17 10412908 10418023 - MGP_AJ_P0045544 Mrpl18 protein_coding protein_coding MGP_AJ_T0045545.1 MGP_AJ_G0023121.1 mouse_genomes_project 17 10415405 10417302 - Mrpl18 protein_coding processed_transcript MGP_AJ_T0045546.1 MGP_AJ_G0023121.1 mouse_genomes_project 17 10415510 10417781 - Mrpl18 protein_coding retained_intron MGP_AJ_T0045547.1 MGP_AJ_G0023121.1 mouse_genomes_project 17 10415554 10417880 - Mrpl18 protein_coding processed_transcript MGP_AJ_T0045548.1 MGP_AJ_G0023121.1 mouse_genomes_project 17 10417179 10417747 - Mrpl18 protein_coding retained_intron MGP_AJ_T0013209.1 MGP_AJ_G0011304.1 mouse_genomes_project 17 6264924 6265480 - processed_pseudogene processed_pseudogene MGP_AJ_T0046179.1 MGP_AJ_G0023321.1 mouse_genomes_project 17 24098304 24102010 + MGP_AJ_P0046179 Rpusd1 protein_coding protein_coding MGP_AJ_T0048597.1 MGP_AJ_G0023999.1 mouse_genomes_project 17 79187112 79187872 - protein_coding retained_intron MGP_AJ_T0048596.1 MGP_AJ_G0023998.1 mouse_genomes_project 17 79169864 79182550 + MGP_AJ_P0048596 Gpatch11 protein_coding protein_coding MGP_AJ_T0098616.1 MGP_AJ_G0036600.1 mouse_genomes_project 17 29788225 29788353 + Gm25447 rRNA rRNA MGP_AJ_T0099651.1 MGP_AJ_G0037617.1 mouse_genomes_project 17 32742784 32742889 + Gm23111 snRNA snRNA MGP_AJ_T0047304.1 MGP_AJ_G0023572.1 mouse_genomes_project 17 34039150 34043402 + MGP_AJ_P0047304 Ly6g6c protein_coding protein_coding MGP_AJ_T0047305.1 MGP_AJ_G0023572.1 mouse_genomes_project 17 34041098 34043817 + MGP_AJ_P0047305 Ly6g6c protein_coding protein_coding MGP_AJ_T0047306.1 MGP_AJ_G0023572.1 mouse_genomes_project 17 34041163 34043311 + MGP_AJ_P0047306 Ly6g6c protein_coding protein_coding MGP_AJ_T0048463.1 MGP_AJ_G0023958.1 mouse_genomes_project 17 71021381 71028376 - MGP_AJ_P0048463 Tgif1 protein_coding protein_coding MGP_AJ_T0048464.1 MGP_AJ_G0023958.1 mouse_genomes_project 17 71021381 71026967 - MGP_AJ_P0048464 Tgif1 protein_coding protein_coding MGP_AJ_T0048465.1 MGP_AJ_G0023958.1 mouse_genomes_project 17 71021387 71028903 - MGP_AJ_P0048465 Tgif1 protein_coding protein_coding MGP_AJ_T0048466.1 MGP_AJ_G0023958.1 mouse_genomes_project 17 71021387 71030698 - MGP_AJ_P0048466 Tgif1 protein_coding protein_coding MGP_AJ_T0048467.1 MGP_AJ_G0023958.1 mouse_genomes_project 17 71021387 71028238 - MGP_AJ_P0048467 Tgif1 protein_coding protein_coding MGP_AJ_T0048468.1 MGP_AJ_G0023958.1 mouse_genomes_project 17 71021904 71026967 - MGP_AJ_P0048468 Tgif1 protein_coding protein_coding MGP_AJ_T0048469.1 MGP_AJ_G0023958.1 mouse_genomes_project 17 71022045 71023503 - MGP_AJ_P0048469 Tgif1 protein_coding protein_coding MGP_AJ_T0048470.1 MGP_AJ_G0023958.1 mouse_genomes_project 17 71022157 71024347 - MGP_AJ_P0048470 Tgif1 protein_coding protein_coding MGP_AJ_T0048471.1 MGP_AJ_G0023958.1 mouse_genomes_project 17 71023357 71026821 - MGP_AJ_P0048471 Tgif1 protein_coding protein_coding MGP_AJ_T0048472.1 MGP_AJ_G0023958.1 mouse_genomes_project 17 71023471 71028300 - Tgif1 protein_coding processed_transcript MGP_AJ_T0048473.1 MGP_AJ_G0023958.1 mouse_genomes_project 17 71023846 71026991 - Tgif1 protein_coding retained_intron MGP_AJ_T0048474.1 MGP_AJ_G0023958.1 mouse_genomes_project 17 71025550 71026984 - Tgif1 protein_coding processed_transcript MGP_AJ_T0045443.1 MGP_AJ_G0023091.1 mouse_genomes_project 17 4457153 4568460 + MGP_AJ_P0045443 protein_coding protein_coding MGP_AJ_T0003791.1 MGP_AJ_G0003404.1 mouse_genomes_project 17 87789851 87792140 - Gm15978 antisense antisense MGP_AJ_T0048260.1 MGP_AJ_G0023885.1 mouse_genomes_project 17 56614225 56615461 - MGP_AJ_P0048260 Znrf4 protein_coding protein_coding MGP_AJ_T0045703.1 MGP_AJ_G0023178.1 mouse_genomes_project 17 18481163 18504493 - MGP_AJ_P0045703 protein_coding protein_coding MGP_AJ_T0017560.1 MGP_AJ_G0015321.1 mouse_genomes_project 17 32393534 32408491 + Gm20507 processed_transcript processed_transcript MGP_AJ_T0048552.1 MGP_AJ_G0023987.1 mouse_genomes_project 17 74776693 74787468 + MGP_AJ_P0048552 Yipf4 protein_coding protein_coding MGP_AJ_T0047957.1 MGP_AJ_G0023782.1 mouse_genomes_project 17 46582001 46596037 + MGP_AJ_P0047957 Cul7 protein_coding protein_coding MGP_AJ_T0047958.1 MGP_AJ_G0023782.1 mouse_genomes_project 17 46582227 46586512 + Cul7 protein_coding retained_intron MGP_AJ_T0047959.1 MGP_AJ_G0023782.1 mouse_genomes_project 17 46582236 46588739 + Cul7 protein_coding retained_intron MGP_AJ_T0047960.1 MGP_AJ_G0023782.1 mouse_genomes_project 17 46583087 46596037 + MGP_AJ_P0047960 Cul7 protein_coding nonsense_mediated_decay MGP_AJ_T0047961.1 MGP_AJ_G0023782.1 mouse_genomes_project 17 46584515 46587310 + Cul7 protein_coding processed_transcript MGP_AJ_T0047962.1 MGP_AJ_G0023782.1 mouse_genomes_project 17 46584557 46596037 + MGP_AJ_P0047962 Cul7 protein_coding nonsense_mediated_decay MGP_AJ_T0047963.1 MGP_AJ_G0023782.1 mouse_genomes_project 17 46593449 46596037 + Cul7 protein_coding retained_intron MGP_AJ_T0046847.1 MGP_AJ_G0023480.1 mouse_genomes_project 17 31937788 31941880 - MGP_AJ_P0046847 Morc2b protein_coding protein_coding MGP_AJ_T0046848.1 MGP_AJ_G0023480.1 mouse_genomes_project 17 31937843 31941696 - MGP_AJ_P0046848 Morc2b protein_coding protein_coding MGP_AJ_T0048767.1 MGP_AJ_G0024070.1 mouse_genomes_project 17 89051328 89112691 + MGP_AJ_P0048767 Ppp1r21 protein_coding protein_coding MGP_AJ_T0048768.1 MGP_AJ_G0024070.1 mouse_genomes_project 17 89051426 89067446 + Ppp1r21 protein_coding retained_intron MGP_AJ_T0048769.1 MGP_AJ_G0024070.1 mouse_genomes_project 17 89086623 89090323 + Ppp1r21 protein_coding retained_intron MGP_AJ_T0048770.1 MGP_AJ_G0024070.1 mouse_genomes_project 17 89099402 89101651 + Ppp1r21 protein_coding retained_intron MGP_AJ_T0048771.1 MGP_AJ_G0024070.1 mouse_genomes_project 17 89099520 89103508 + Ppp1r21 protein_coding retained_intron MGP_AJ_T0048772.1 MGP_AJ_G0024070.1 mouse_genomes_project 17 89103057 89112689 + Ppp1r21 protein_coding retained_intron MGP_AJ_T0099675.1 MGP_AJ_G0037641.1 mouse_genomes_project 17 87140553 87140663 - Gm22235 snRNA snRNA MGP_AJ_T0045505.1 MGP_AJ_G0023108.1 mouse_genomes_project 17 7700459 7815071 - MGP_AJ_P0045505 Qk protein_coding protein_coding MGP_AJ_T0045506.1 MGP_AJ_G0023108.1 mouse_genomes_project 17 7704167 7815071 - MGP_AJ_P0045506 Qk protein_coding protein_coding MGP_AJ_T0006897.1 MGP_AJ_G0005674.1 mouse_genomes_project 17 4000063 4029655 - Gm2885 lincRNA lincRNA MGP_AJ_T0013265.1 MGP_AJ_G0011360.1 mouse_genomes_project 17 47572346 47573915 - processed_pseudogene processed_pseudogene MGP_AJ_T0003723.1 MGP_AJ_G0003352.1 mouse_genomes_project 17 22885338 22885839 + Rab26os antisense antisense MGP_AJ_T0003724.1 MGP_AJ_G0003352.1 mouse_genomes_project 17 22885357 22885838 + Rab26os antisense antisense MGP_AJ_T0102397.1 MGP_AJ_G0040139.1 mouse_genomes_project 17 32641259 32644186 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0048126.1 MGP_AJ_G0023833.1 mouse_genomes_project 17 48398293 48412949 - MGP_AJ_P0048126 Apobec2 protein_coding protein_coding MGP_AJ_T0047983.1 MGP_AJ_G0023793.1 mouse_genomes_project 17 46732444 46766973 - MGP_AJ_P0047983 Gltscr1l protein_coding protein_coding MGP_AJ_T0006953.1 MGP_AJ_G0005721.1 mouse_genomes_project 17 36402403 36417577 - Gm20497 lincRNA lincRNA MGP_AJ_T0045530.1 MGP_AJ_G0023117.1 mouse_genomes_project 17 10173926 10267760 - MGP_AJ_P0045530 Igf2r protein_coding protein_coding MGP_AJ_T0045531.1 MGP_AJ_G0023117.1 mouse_genomes_project 17 10192901 10195654 - MGP_AJ_P0045531 Igf2r protein_coding nonsense_mediated_decay MGP_AJ_T0045532.1 MGP_AJ_G0023117.1 mouse_genomes_project 17 10246933 10249700 - MGP_AJ_P0045532 Igf2r protein_coding protein_coding MGP_AJ_T0046886.1 MGP_AJ_G0023492.1 mouse_genomes_project 17 32409014 32449433 - MGP_AJ_P0046886 Hnrnpm protein_coding protein_coding MGP_AJ_T0046887.1 MGP_AJ_G0023492.1 mouse_genomes_project 17 32409016 32447964 - MGP_AJ_P0046887 Hnrnpm protein_coding protein_coding MGP_AJ_T0046888.1 MGP_AJ_G0023492.1 mouse_genomes_project 17 32409017 32447960 - MGP_AJ_P0046888 Hnrnpm protein_coding protein_coding MGP_AJ_T0046889.1 MGP_AJ_G0023492.1 mouse_genomes_project 17 32409020 32423000 - MGP_AJ_P0046889 Hnrnpm protein_coding protein_coding MGP_AJ_T0046890.1 MGP_AJ_G0023492.1 mouse_genomes_project 17 32409020 32447960 - MGP_AJ_P0046890 Hnrnpm protein_coding protein_coding MGP_AJ_T0046891.1 MGP_AJ_G0023492.1 mouse_genomes_project 17 32413039 32429137 - MGP_AJ_P0046891 Hnrnpm protein_coding protein_coding MGP_AJ_T0046892.1 MGP_AJ_G0023492.1 mouse_genomes_project 17 32431203 32447957 - Hnrnpm protein_coding retained_intron MGP_AJ_T0046893.1 MGP_AJ_G0023492.1 mouse_genomes_project 17 32439506 32447973 - Hnrnpm protein_coding retained_intron MGP_AJ_T0048242.1 MGP_AJ_G0023879.1 mouse_genomes_project 17 56366412 56373948 - MGP_AJ_P0048242 Ticam1 protein_coding protein_coding MGP_AJ_T0098421.1 MGP_AJ_G0036405.1 mouse_genomes_project 17 81120686 81121078 + pseudogene pseudogene MGP_AJ_T0048360.1 MGP_AJ_G0023927.1 mouse_genomes_project 17 62719182 62999446 - MGP_AJ_P0048360 Efna5 protein_coding protein_coding MGP_AJ_T0048361.1 MGP_AJ_G0023927.1 mouse_genomes_project 17 62722304 62999273 - MGP_AJ_P0048361 Efna5 protein_coding protein_coding MGP_AJ_T0013237.1 MGP_AJ_G0011332.1 mouse_genomes_project 17 34634557 34634753 - processed_pseudogene processed_pseudogene MGP_AJ_T0045524.1 MGP_AJ_G0023112.1 mouse_genomes_project 17 9721929 9810262 - MGP_AJ_P0045524 Map3k4 protein_coding unknown_likely_coding MGP_AJ_T0045525.1 MGP_AJ_G0023112.1 mouse_genomes_project 17 9722471 9810357 - MGP_AJ_P0045525 Map3k4 protein_coding protein_coding MGP_AJ_T0046027.1 MGP_AJ_G0023290.1 mouse_genomes_project 17 23254271 23299775 - MGP_AJ_P0046027 Mapk8ip3 protein_coding nonsense_mediated_decay MGP_AJ_T0046042.1 MGP_AJ_G0023290.1 mouse_genomes_project 17 23259634 23299814 - MGP_AJ_P0046042 Mapk8ip3 protein_coding protein_coding MGP_AJ_T0046043.1 MGP_AJ_G0023290.1 mouse_genomes_project 17 23259634 23299814 - MGP_AJ_P0046043 Mapk8ip3 protein_coding protein_coding MGP_AJ_T0046044.1 MGP_AJ_G0023290.1 mouse_genomes_project 17 23259661 23299749 - MGP_AJ_P0046044 Mapk8ip3 protein_coding protein_coding MGP_AJ_T0046045.1 MGP_AJ_G0023290.1 mouse_genomes_project 17 23259661 23299804 - MGP_AJ_P0046045 Mapk8ip3 protein_coding protein_coding MGP_AJ_T0046046.1 MGP_AJ_G0023290.1 mouse_genomes_project 17 23259661 23299805 - MGP_AJ_P0046046 Mapk8ip3 protein_coding protein_coding MGP_AJ_T0046047.1 MGP_AJ_G0023290.1 mouse_genomes_project 17 23259661 23299731 - MGP_AJ_P0046047 Mapk8ip3 protein_coding protein_coding MGP_AJ_T0046048.1 MGP_AJ_G0023290.1 mouse_genomes_project 17 23259662 23299766 - MGP_AJ_P0046048 Mapk8ip3 protein_coding protein_coding MGP_AJ_T0046049.1 MGP_AJ_G0023290.1 mouse_genomes_project 17 23260736 23261846 - Mapk8ip3 protein_coding retained_intron MGP_AJ_T0046050.1 MGP_AJ_G0023290.1 mouse_genomes_project 17 23260927 23299797 - MGP_AJ_P0046050 Mapk8ip3 protein_coding protein_coding MGP_AJ_T0046051.1 MGP_AJ_G0023290.1 mouse_genomes_project 17 23261076 23299805 - MGP_AJ_P0046051 Mapk8ip3 protein_coding protein_coding MGP_AJ_T0046052.1 MGP_AJ_G0023290.1 mouse_genomes_project 17 23261792 23263215 - Mapk8ip3 protein_coding retained_intron MGP_AJ_T0046053.1 MGP_AJ_G0023290.1 mouse_genomes_project 17 23262672 23263847 - Mapk8ip3 protein_coding retained_intron MGP_AJ_T0046054.1 MGP_AJ_G0023290.1 mouse_genomes_project 17 23263946 23265211 - Mapk8ip3 protein_coding retained_intron MGP_AJ_T0046055.1 MGP_AJ_G0023290.1 mouse_genomes_project 17 23264819 23265494 - Mapk8ip3 protein_coding retained_intron MGP_AJ_T0046056.1 MGP_AJ_G0023290.1 mouse_genomes_project 17 23266658 23267917 - Mapk8ip3 protein_coding retained_intron MGP_AJ_T0046057.1 MGP_AJ_G0023290.1 mouse_genomes_project 17 23267309 23268929 - Mapk8ip3 protein_coding retained_intron MGP_AJ_T0046058.1 MGP_AJ_G0023290.1 mouse_genomes_project 17 23268965 23278792 - Mapk8ip3 protein_coding processed_transcript MGP_AJ_T0046059.1 MGP_AJ_G0023290.1 mouse_genomes_project 17 23269055 23286066 - MGP_AJ_P0046059 Mapk8ip3 protein_coding protein_coding MGP_AJ_T0046060.1 MGP_AJ_G0023290.1 mouse_genomes_project 17 23277579 23286409 - Mapk8ip3 protein_coding retained_intron MGP_AJ_T0046061.1 MGP_AJ_G0023290.1 mouse_genomes_project 17 23289296 23299782 - Mapk8ip3 protein_coding retained_intron MGP_AJ_T0048424.1 MGP_AJ_G0023946.1 mouse_genomes_project 17 66636182 66661394 - MGP_AJ_P0048424 Rab12 protein_coding protein_coding MGP_AJ_T0048425.1 MGP_AJ_G0023946.1 mouse_genomes_project 17 66639161 66641991 - Rab12 protein_coding retained_intron MGP_AJ_T0048426.1 MGP_AJ_G0023946.1 mouse_genomes_project 17 66642020 66661057 - Rab12 protein_coding processed_transcript MGP_AJ_T0048427.1 MGP_AJ_G0023946.1 mouse_genomes_project 17 66647464 66661390 - Rab12 protein_coding retained_intron MGP_AJ_T0006987.1 MGP_AJ_G0005743.1 mouse_genomes_project 17 83422838 83424563 + Gm29052 lincRNA lincRNA MGP_AJ_T0048584.1 MGP_AJ_G0023991.1 mouse_genomes_project 17 75704663 75802928 + MGP_AJ_P0048584 Rasgrp3 protein_coding protein_coding MGP_AJ_T0048585.1 MGP_AJ_G0023991.1 mouse_genomes_project 17 75735714 75802928 + MGP_AJ_P0048585 Rasgrp3 protein_coding protein_coding MGP_AJ_T0099666.1 MGP_AJ_G0037632.1 mouse_genomes_project 17 66214544 66214651 + Gm23264 snRNA snRNA MGP_AJ_T0046725.1 MGP_AJ_G0023448.1 mouse_genomes_project 17 30267214 30279287 + MGP_AJ_P0046725 Ndufv3 protein_coding protein_coding MGP_AJ_T0046726.1 MGP_AJ_G0023448.1 mouse_genomes_project 17 30267249 30275800 + Ndufv3 protein_coding processed_transcript MGP_AJ_T0046727.1 MGP_AJ_G0023448.1 mouse_genomes_project 17 30267257 30279290 + MGP_AJ_P0046727 Ndufv3 protein_coding protein_coding MGP_AJ_T0046728.1 MGP_AJ_G0023448.1 mouse_genomes_project 17 30267284 30275203 + MGP_AJ_P0046728 Ndufv3 protein_coding protein_coding MGP_AJ_T0046729.1 MGP_AJ_G0023448.1 mouse_genomes_project 17 30277052 30279290 + Ndufv3 protein_coding processed_transcript MGP_AJ_T0102418.1 MGP_AJ_G0040160.1 mouse_genomes_project 17 35680829 35682053 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0003784.1 MGP_AJ_G0003397.1 mouse_genomes_project 17 64868466 64873713 - Gm17133 antisense antisense MGP_AJ_T0046063.1 MGP_AJ_G0023294.1 mouse_genomes_project 17 23328189 23384934 - MGP_AJ_P0046063 Cramp1l protein_coding unknown_likely_coding MGP_AJ_T0047584.1 MGP_AJ_G0023637.1 mouse_genomes_project 17 35856550 35858763 - MGP_AJ_P0047584 H2-M1 protein_coding protein_coding MGP_AJ_T0046132.1 MGP_AJ_G0023308.1 mouse_genomes_project 17 23670540 23672308 + MGP_AJ_P0046132 Prss34 protein_coding protein_coding MGP_AJ_T0046536.1 MGP_AJ_G0023402.1 mouse_genomes_project 17 27043308 27046351 - MGP_AJ_P0046536 Clps protein_coding protein_coding MGP_AJ_T0046537.1 MGP_AJ_G0023402.1 mouse_genomes_project 17 27043311 27046296 - MGP_AJ_P0046537 Clps protein_coding protein_coding MGP_AJ_T0047680.1 MGP_AJ_G0023676.1 mouse_genomes_project 17 36819834 36820829 - MGP_AJ_P0047680 Olfr113 protein_coding protein_coding MGP_AJ_T0047151.1 MGP_AJ_G0023544.1 mouse_genomes_project 17 33511696 33513668 - Egfl8 protein_coding retained_intron MGP_AJ_T0047152.1 MGP_AJ_G0023544.1 mouse_genomes_project 17 33511697 33514319 - MGP_AJ_P0047152 Egfl8 protein_coding protein_coding MGP_AJ_T0047153.1 MGP_AJ_G0023544.1 mouse_genomes_project 17 33511701 33514319 - MGP_AJ_P0047153 Egfl8 protein_coding protein_coding MGP_AJ_T0047154.1 MGP_AJ_G0023544.1 mouse_genomes_project 17 33512124 33514136 - MGP_AJ_P0047154 Egfl8 protein_coding protein_coding MGP_AJ_T0047155.1 MGP_AJ_G0023544.1 mouse_genomes_project 17 33512511 33514304 - Egfl8 protein_coding retained_intron MGP_AJ_T0047156.1 MGP_AJ_G0023544.1 mouse_genomes_project 17 33513116 33513669 - Egfl8 protein_coding retained_intron MGP_AJ_T0102371.1 MGP_AJ_G0040113.1 mouse_genomes_project 17 16397977 16412342 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0048094.1 MGP_AJ_G0023825.1 mouse_genomes_project 17 48221627 48236490 + MGP_AJ_P0048094 Trem3 protein_coding protein_coding MGP_AJ_T0045475.1 MGP_AJ_G0023100.1 mouse_genomes_project 17 5811468 5828566 + Sft2d1 protein_coding retained_intron MGP_AJ_T0045476.1 MGP_AJ_G0023100.1 mouse_genomes_project 17 5811468 5828566 + MGP_AJ_P0045476 Sft2d1 protein_coding protein_coding MGP_AJ_T0045477.1 MGP_AJ_G0023100.1 mouse_genomes_project 17 5811475 5893646 + Sft2d1 protein_coding processed_transcript MGP_AJ_T0045478.1 MGP_AJ_G0023100.1 mouse_genomes_project 17 5811488 5828180 + MGP_AJ_P0045478 Sft2d1 protein_coding nonsense_mediated_decay MGP_AJ_T0045479.1 MGP_AJ_G0023100.1 mouse_genomes_project 17 5811505 5828133 + Sft2d1 protein_coding processed_transcript MGP_AJ_T0045480.1 MGP_AJ_G0023100.1 mouse_genomes_project 17 5811535 5828564 + MGP_AJ_P0045480 Sft2d1 protein_coding nonsense_mediated_decay MGP_AJ_T0045481.1 MGP_AJ_G0023100.1 mouse_genomes_project 17 5811541 5818571 + Sft2d1 protein_coding retained_intron MGP_AJ_T0045483.1 MGP_AJ_G0023100.1 mouse_genomes_project 17 5819091 5824800 + Sft2d1 protein_coding retained_intron MGP_AJ_T0045484.1 MGP_AJ_G0023100.1 mouse_genomes_project 17 5820910 5828187 + Sft2d1 protein_coding retained_intron MGP_AJ_T0045485.1 MGP_AJ_G0023100.1 mouse_genomes_project 17 5824722 5828564 + Sft2d1 protein_coding retained_intron MGP_AJ_T0046618.1 MGP_AJ_G0023420.1 mouse_genomes_project 17 27854231 27864474 + Pi16 protein_coding retained_intron MGP_AJ_T0046619.1 MGP_AJ_G0023420.1 mouse_genomes_project 17 27854551 27864481 + MGP_AJ_P0046619 Pi16 protein_coding protein_coding MGP_AJ_T0046620.1 MGP_AJ_G0023420.1 mouse_genomes_project 17 27854569 27864487 + MGP_AJ_P0046620 Pi16 protein_coding protein_coding MGP_AJ_T0003729.1 MGP_AJ_G0003357.1 mouse_genomes_project 17 26100899 26102416 + Gm15420 antisense antisense MGP_AJ_T0047546.1 MGP_AJ_G0023620.1 mouse_genomes_project 17 35074185 35083984 + MGP_AJ_P0047546 Gnl1 protein_coding protein_coding MGP_AJ_T0047547.1 MGP_AJ_G0023620.1 mouse_genomes_project 17 35074715 35075465 + Gnl1 protein_coding retained_intron MGP_AJ_T0046736.1 MGP_AJ_G0023450.1 mouse_genomes_project 17 30363769 30389483 - MGP_AJ_P0046736 Cbs protein_coding protein_coding MGP_AJ_T0046737.1 MGP_AJ_G0023450.1 mouse_genomes_project 17 30363786 30389449 - MGP_AJ_P0046737 Cbs protein_coding protein_coding MGP_AJ_T0046738.1 MGP_AJ_G0023450.1 mouse_genomes_project 17 30363787 30389449 - MGP_AJ_P0046738 Cbs protein_coding protein_coding MGP_AJ_T0046739.1 MGP_AJ_G0023450.1 mouse_genomes_project 17 30368412 30369121 - Cbs protein_coding retained_intron MGP_AJ_T0046740.1 MGP_AJ_G0023450.1 mouse_genomes_project 17 30372282 30377567 - Cbs protein_coding processed_transcript MGP_AJ_T0046741.1 MGP_AJ_G0023450.1 mouse_genomes_project 17 30372807 30374395 - Cbs protein_coding processed_transcript MGP_AJ_T0046742.1 MGP_AJ_G0023450.1 mouse_genomes_project 17 30376409 30389074 - MGP_AJ_P0046742 Cbs protein_coding protein_coding MGP_AJ_T0046743.1 MGP_AJ_G0023450.1 mouse_genomes_project 17 30376463 30388933 - MGP_AJ_P0046743 Cbs protein_coding protein_coding MGP_AJ_T0046744.1 MGP_AJ_G0023450.1 mouse_genomes_project 17 30378909 30388933 - MGP_AJ_P0046744 Cbs protein_coding protein_coding MGP_AJ_T0045482.1 MGP_AJ_G0023101.1 mouse_genomes_project 17 5811548 5828571 + MGP_AJ_P0045482 protein_coding protein_coding MGP_AJ_T0047552.1 MGP_AJ_G0023623.1 mouse_genomes_project 17 35165758 35172229 - H2-T10 protein_coding retained_intron MGP_AJ_T0047553.1 MGP_AJ_G0023623.1 mouse_genomes_project 17 35166965 35172786 - MGP_AJ_P0047553 H2-T10 protein_coding protein_coding MGP_AJ_T0047554.1 MGP_AJ_G0023623.1 mouse_genomes_project 17 35166967 35172843 - MGP_AJ_P0047554 H2-T10 protein_coding protein_coding MGP_AJ_T0046490.1 MGP_AJ_G0023395.1 mouse_genomes_project 17 26795079 26808090 + MGP_AJ_P0046490 Fance protein_coding protein_coding MGP_AJ_T0046491.1 MGP_AJ_G0023395.1 mouse_genomes_project 17 26795096 26808090 + Fance protein_coding retained_intron MGP_AJ_T0046492.1 MGP_AJ_G0023395.1 mouse_genomes_project 17 26795115 26808089 + MGP_AJ_P0046492 Fance protein_coding protein_coding MGP_AJ_T0046493.1 MGP_AJ_G0023395.1 mouse_genomes_project 17 26795121 26808091 + MGP_AJ_P0046493 Fance protein_coding protein_coding MGP_AJ_T0046494.1 MGP_AJ_G0023395.1 mouse_genomes_project 17 26795193 26807776 + MGP_AJ_P0046494 Fance protein_coding protein_coding MGP_AJ_T0046495.1 MGP_AJ_G0023395.1 mouse_genomes_project 17 26797654 26802362 + MGP_AJ_P0046495 Fance protein_coding protein_coding MGP_AJ_T0046496.1 MGP_AJ_G0023395.1 mouse_genomes_project 17 26797691 26798677 + Fance protein_coding retained_intron MGP_AJ_T0046497.1 MGP_AJ_G0023395.1 mouse_genomes_project 17 26798587 26799807 + Fance protein_coding retained_intron MGP_AJ_T0046498.1 MGP_AJ_G0023395.1 mouse_genomes_project 17 26799043 26800465 + Fance protein_coding processed_transcript MGP_AJ_T0046499.1 MGP_AJ_G0023395.1 mouse_genomes_project 17 26799098 26807807 + MGP_AJ_P0046499 Fance protein_coding protein_coding MGP_AJ_T0046500.1 MGP_AJ_G0023395.1 mouse_genomes_project 17 26799397 26802346 + Fance protein_coding retained_intron MGP_AJ_T0046501.1 MGP_AJ_G0023395.1 mouse_genomes_project 17 26799654 26807972 + MGP_AJ_P0046501 Fance protein_coding protein_coding MGP_AJ_T0046502.1 MGP_AJ_G0023395.1 mouse_genomes_project 17 26799883 26808022 + MGP_AJ_P0046502 Fance protein_coding protein_coding MGP_AJ_T0046503.1 MGP_AJ_G0023395.1 mouse_genomes_project 17 26799992 26808090 + Fance protein_coding processed_transcript MGP_AJ_T0013257.1 MGP_AJ_G0011352.1 mouse_genomes_project 17 37187590 37187962 - processed_pseudogene processed_pseudogene MGP_AJ_T0046017.1 MGP_AJ_G0023287.1 mouse_genomes_project 17 23244829 23248575 - MGP_AJ_P0046017 Nubp2 protein_coding protein_coding MGP_AJ_T0006997.1 MGP_AJ_G0005750.1 mouse_genomes_project 17 88657191 88671205 - Gm26612 lincRNA lincRNA MGP_AJ_T0046379.1 MGP_AJ_G0023369.1 mouse_genomes_project 17 25371261 25403863 + MGP_AJ_P0046379 Syngap1 protein_coding protein_coding MGP_AJ_T0046380.1 MGP_AJ_G0023369.1 mouse_genomes_project 17 25371450 25402129 + MGP_AJ_P0046380 Syngap1 protein_coding protein_coding MGP_AJ_T0046381.1 MGP_AJ_G0023369.1 mouse_genomes_project 17 25371460 25402089 + MGP_AJ_P0046381 Syngap1 protein_coding protein_coding MGP_AJ_T0046382.1 MGP_AJ_G0023369.1 mouse_genomes_project 17 25371507 25402669 + MGP_AJ_P0046382 Syngap1 protein_coding nonsense_mediated_decay MGP_AJ_T0046383.1 MGP_AJ_G0023369.1 mouse_genomes_project 17 25383838 25402481 + MGP_AJ_P0046383 Syngap1 protein_coding protein_coding MGP_AJ_T0046384.1 MGP_AJ_G0023369.1 mouse_genomes_project 17 25389069 25403863 + MGP_AJ_P0046384 Syngap1 protein_coding protein_coding MGP_AJ_T0046385.1 MGP_AJ_G0023369.1 mouse_genomes_project 17 25389525 25391811 + MGP_AJ_P0046385 Syngap1 protein_coding nonsense_mediated_decay MGP_AJ_T0046386.1 MGP_AJ_G0023369.1 mouse_genomes_project 17 25391537 25392255 + Syngap1 protein_coding retained_intron MGP_AJ_T0046387.1 MGP_AJ_G0023369.1 mouse_genomes_project 17 25394005 25402110 + MGP_AJ_P0046387 Syngap1 protein_coding nonsense_mediated_decay MGP_AJ_T0046388.1 MGP_AJ_G0023369.1 mouse_genomes_project 17 25394711 25402139 + MGP_AJ_P0046388 Syngap1 protein_coding nonsense_mediated_decay MGP_AJ_T0046389.1 MGP_AJ_G0023369.1 mouse_genomes_project 17 25394725 25402135 + MGP_AJ_P0046389 Syngap1 protein_coding nonsense_mediated_decay MGP_AJ_T0099647.1 MGP_AJ_G0037613.1 mouse_genomes_project 17 28901630 28901703 + Gm25049 snRNA snRNA MGP_AJ_T0048195.1 MGP_AJ_G0023855.1 mouse_genomes_project 17 55527547 55565324 + MGP_AJ_P0048195 St6gal2 protein_coding protein_coding MGP_AJ_T0048196.1 MGP_AJ_G0023855.1 mouse_genomes_project 17 55527554 55580506 + MGP_AJ_P0048196 St6gal2 protein_coding protein_coding MGP_AJ_T0048197.1 MGP_AJ_G0023855.1 mouse_genomes_project 17 55527715 55596709 + MGP_AJ_P0048197 St6gal2 protein_coding protein_coding MGP_AJ_T0048198.1 MGP_AJ_G0023855.1 mouse_genomes_project 17 55528411 55564660 + St6gal2 protein_coding processed_transcript MGP_AJ_T0046761.1 MGP_AJ_G0023456.1 mouse_genomes_project 17 30952931 30958450 - MGP_AJ_P0046761 Ephx3 protein_coding protein_coding MGP_AJ_T0046762.1 MGP_AJ_G0023456.1 mouse_genomes_project 17 30953598 30958536 - MGP_AJ_P0046762 Ephx3 protein_coding protein_coding MGP_AJ_T0101972.1 MGP_AJ_G0039805.1 mouse_genomes_project 17 71744985 71775745 + transcribed_unprocessed_pseudogene processed_transcript MGP_AJ_T0101973.1 MGP_AJ_G0039805.1 mouse_genomes_project 17 71747150 71763970 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_AJ_T0013300.1 MGP_AJ_G0011395.1 mouse_genomes_project 17 87531852 87533604 + processed_pseudogene processed_pseudogene MGP_AJ_T0047696.1 MGP_AJ_G0023692.1 mouse_genomes_project 17 37297552 37298658 - MGP_AJ_P0047696 Olfr129 protein_coding protein_coding MGP_AJ_T0047697.1 MGP_AJ_G0023692.1 mouse_genomes_project 17 37297552 37302851 - MGP_AJ_P0047697 Olfr129 protein_coding protein_coding MGP_AJ_T0045848.1 MGP_AJ_G0023242.1 mouse_genomes_project 17 22297298 22298449 - MGP_AJ_P0045848 Sbpl protein_coding protein_coding MGP_AJ_T0006985.1 MGP_AJ_G0005741.1 mouse_genomes_project 17 79218725 79229372 + Gm26637 lincRNA lincRNA MGP_AJ_T0047676.1 MGP_AJ_G0023674.1 mouse_genomes_project 17 36743035 36744076 + MGP_AJ_P0047676 protein_coding protein_coding MGP_AJ_T0047415.1 MGP_AJ_G0023600.1 mouse_genomes_project 17 34640407 34641910 + MGP_AJ_P0047415 2300002M23Rik protein_coding protein_coding MGP_AJ_T0047416.1 MGP_AJ_G0023600.1 mouse_genomes_project 17 34640442 34641888 + 2300002M23Rik protein_coding retained_intron MGP_AJ_T0045569.1 MGP_AJ_G0023126.1 mouse_genomes_project 17 10521144 10534545 + MGP_AJ_P0045569 Sod2 protein_coding protein_coding MGP_AJ_T0048651.1 MGP_AJ_G0024024.1 mouse_genomes_project 17 81319804 81320615 - MGP_AJ_P0048651 protein_coding protein_coding MGP_AJ_T0048515.1 MGP_AJ_G0023968.1 mouse_genomes_project 17 71771277 71797679 + MGP_AJ_P0048515 Spdya protein_coding protein_coding MGP_AJ_T0048516.1 MGP_AJ_G0023968.1 mouse_genomes_project 17 71771277 71808480 + MGP_AJ_P0048516 Spdya protein_coding protein_coding MGP_AJ_T0048517.1 MGP_AJ_G0023968.1 mouse_genomes_project 17 71771288 71808480 + MGP_AJ_P0048517 Spdya protein_coding protein_coding MGP_AJ_T0048518.1 MGP_AJ_G0023968.1 mouse_genomes_project 17 71775459 71807621 + MGP_AJ_P0048518 Spdya protein_coding protein_coding MGP_AJ_T0047712.1 MGP_AJ_G0023702.1 mouse_genomes_project 17 37903122 37909326 + MGP_AJ_P0047712 Esp31 protein_coding protein_coding MGP_AJ_T0047628.1 MGP_AJ_G0023651.1 mouse_genomes_project 17 36182802 36192221 + MGP_AJ_P0047628 Zfp57 protein_coding protein_coding MGP_AJ_T0047629.1 MGP_AJ_G0023651.1 mouse_genomes_project 17 36184070 36191031 + MGP_AJ_P0047629 Zfp57 protein_coding protein_coding MGP_AJ_T0047630.1 MGP_AJ_G0023651.1 mouse_genomes_project 17 36184113 36192221 + MGP_AJ_P0047630 Zfp57 protein_coding protein_coding MGP_AJ_T0047631.1 MGP_AJ_G0023651.1 mouse_genomes_project 17 36184142 36187672 + MGP_AJ_P0047631 Zfp57 protein_coding protein_coding MGP_AJ_T0047632.1 MGP_AJ_G0023651.1 mouse_genomes_project 17 36184157 36185405 + Zfp57 protein_coding retained_intron MGP_AJ_T0047633.1 MGP_AJ_G0023651.1 mouse_genomes_project 17 36184165 36185283 + Zfp57 protein_coding retained_intron MGP_AJ_T0047634.1 MGP_AJ_G0023651.1 mouse_genomes_project 17 36184184 36191412 + MGP_AJ_P0047634 Zfp57 protein_coding protein_coding MGP_AJ_T0047635.1 MGP_AJ_G0023651.1 mouse_genomes_project 17 36184200 36187657 + MGP_AJ_P0047635 Zfp57 protein_coding protein_coding MGP_AJ_T0047636.1 MGP_AJ_G0023651.1 mouse_genomes_project 17 36184258 36191335 + MGP_AJ_P0047636 Zfp57 protein_coding protein_coding MGP_AJ_T0047637.1 MGP_AJ_G0023651.1 mouse_genomes_project 17 36184626 36192224 + MGP_AJ_P0047637 Zfp57 protein_coding protein_coding MGP_AJ_T0047638.1 MGP_AJ_G0023651.1 mouse_genomes_project 17 36185254 36192221 + MGP_AJ_P0047638 Zfp57 protein_coding protein_coding MGP_AJ_T0047639.1 MGP_AJ_G0023651.1 mouse_genomes_project 17 36186112 36191304 + MGP_AJ_P0047639 Zfp57 protein_coding protein_coding MGP_AJ_T0047640.1 MGP_AJ_G0023651.1 mouse_genomes_project 17 36186193 36187839 + Zfp57 protein_coding retained_intron MGP_AJ_T0045442.1 MGP_AJ_G0023090.1 mouse_genomes_project 17 4456859 4568590 + MGP_AJ_P0045442 protein_coding protein_coding MGP_AJ_T0003764.1 MGP_AJ_G0003384.1 mouse_genomes_project 17 43483838 43487008 - 1700071M16Rik antisense antisense MGP_AJ_T0003765.1 MGP_AJ_G0003384.1 mouse_genomes_project 17 43484031 43487008 - 1700071M16Rik antisense antisense MGP_AJ_T0003766.1 MGP_AJ_G0003384.1 mouse_genomes_project 17 43486658 43487930 - 1700071M16Rik antisense antisense MGP_AJ_T0003767.1 MGP_AJ_G0003384.1 mouse_genomes_project 17 43486658 43487940 - 1700071M16Rik antisense antisense MGP_AJ_T0046936.1 MGP_AJ_G0023500.1 mouse_genomes_project 17 32649666 32673051 - MGP_AJ_P0046936 protein_coding protein_coding MGP_AJ_T0010169.1 MGP_AJ_G0008291.1 mouse_genomes_project 17 15481780 15481850 + Mir99b miRNA miRNA MGP_AJ_T0048304.1 MGP_AJ_G0023899.1 mouse_genomes_project 17 56960314 56992686 - MGP_AJ_P0048304 Acsbg2 protein_coding protein_coding MGP_AJ_T0045387.1 MGP_AJ_G0023070.1 mouse_genomes_project 17 601266 641489 - MGP_AJ_P0045387 Tfb1m protein_coding protein_coding MGP_AJ_T0046651.1 MGP_AJ_G0023429.1 mouse_genomes_project 17 28236979 28283424 + MGP_AJ_P0046651 Cmtr1 protein_coding protein_coding MGP_AJ_T0046652.1 MGP_AJ_G0023429.1 mouse_genomes_project 17 28237191 28251385 + MGP_AJ_P0046652 Cmtr1 protein_coding protein_coding MGP_AJ_T0046653.1 MGP_AJ_G0023429.1 mouse_genomes_project 17 28256038 28267748 + Cmtr1 protein_coding retained_intron MGP_AJ_T0046654.1 MGP_AJ_G0023429.1 mouse_genomes_project 17 28256420 28259327 + MGP_AJ_P0046654 Cmtr1 protein_coding protein_coding MGP_AJ_T0046655.1 MGP_AJ_G0023429.1 mouse_genomes_project 17 28257605 28267332 + Cmtr1 protein_coding processed_transcript MGP_AJ_T0046656.1 MGP_AJ_G0023429.1 mouse_genomes_project 17 28258335 28263090 + Cmtr1 protein_coding processed_transcript MGP_AJ_T0046657.1 MGP_AJ_G0023429.1 mouse_genomes_project 17 28259310 28267436 + Cmtr1 protein_coding retained_intron MGP_AJ_T0046658.1 MGP_AJ_G0023429.1 mouse_genomes_project 17 28262956 28267418 + Cmtr1 protein_coding retained_intron MGP_AJ_T0046659.1 MGP_AJ_G0023429.1 mouse_genomes_project 17 28264249 28280804 + Cmtr1 protein_coding retained_intron MGP_AJ_T0048649.1 MGP_AJ_G0024023.1 mouse_genomes_project 17 80974381 81120649 - MGP_AJ_P0048649 Map4k3 protein_coding protein_coding MGP_AJ_T0048650.1 MGP_AJ_G0024023.1 mouse_genomes_project 17 80974381 81120649 - MGP_AJ_P0048650 Map4k3 protein_coding protein_coding MGP_AJ_T0011442.1 MGP_AJ_G0009564.1 mouse_genomes_project 17 86027442 86027635 + Gm27427 misc_RNA misc_RNA MGP_AJ_T0047343.1 MGP_AJ_G0023583.1 mouse_genomes_project 17 34107856 34119988 + MGP_AJ_P0047343 Bag6 protein_coding protein_coding MGP_AJ_T0047344.1 MGP_AJ_G0023583.1 mouse_genomes_project 17 34107856 34119971 + MGP_AJ_P0047344 Bag6 protein_coding protein_coding MGP_AJ_T0047345.1 MGP_AJ_G0023583.1 mouse_genomes_project 17 34107883 34119972 + MGP_AJ_P0047345 Bag6 protein_coding protein_coding MGP_AJ_T0047346.1 MGP_AJ_G0023583.1 mouse_genomes_project 17 34107906 34112980 + MGP_AJ_P0047346 Bag6 protein_coding protein_coding MGP_AJ_T0047347.1 MGP_AJ_G0023583.1 mouse_genomes_project 17 34108158 34115265 + MGP_AJ_P0047347 Bag6 protein_coding protein_coding MGP_AJ_T0047348.1 MGP_AJ_G0023583.1 mouse_genomes_project 17 34108182 34113043 + MGP_AJ_P0047348 Bag6 protein_coding protein_coding MGP_AJ_T0047349.1 MGP_AJ_G0023583.1 mouse_genomes_project 17 34108390 34111376 + MGP_AJ_P0047349 Bag6 protein_coding protein_coding MGP_AJ_T0047350.1 MGP_AJ_G0023583.1 mouse_genomes_project 17 34108402 34119015 + MGP_AJ_P0047350 Bag6 protein_coding protein_coding MGP_AJ_T0047351.1 MGP_AJ_G0023583.1 mouse_genomes_project 17 34108416 34119986 + MGP_AJ_P0047351 Bag6 protein_coding protein_coding MGP_AJ_T0047352.1 MGP_AJ_G0023583.1 mouse_genomes_project 17 34108795 34111636 + Bag6 protein_coding retained_intron MGP_AJ_T0047353.1 MGP_AJ_G0023583.1 mouse_genomes_project 17 34111243 34112521 + Bag6 protein_coding retained_intron MGP_AJ_T0047354.1 MGP_AJ_G0023583.1 mouse_genomes_project 17 34112901 34114063 + Bag6 protein_coding retained_intron MGP_AJ_T0047355.1 MGP_AJ_G0023583.1 mouse_genomes_project 17 34113829 34114656 + Bag6 protein_coding retained_intron MGP_AJ_T0047356.1 MGP_AJ_G0023583.1 mouse_genomes_project 17 34114646 34115272 + Bag6 protein_coding retained_intron MGP_AJ_T0047357.1 MGP_AJ_G0023583.1 mouse_genomes_project 17 34118553 34119985 + MGP_AJ_P0047357 Bag6 protein_coding protein_coding MGP_AJ_T0047358.1 MGP_AJ_G0023583.1 mouse_genomes_project 17 34119042 34119962 + Bag6 protein_coding retained_intron MGP_AJ_T0047975.1 MGP_AJ_G0023789.1 mouse_genomes_project 17 46669244 46685765 - MGP_AJ_P0047975 Cnpy3 protein_coding protein_coding MGP_AJ_T0047976.1 MGP_AJ_G0023789.1 mouse_genomes_project 17 46669295 46685748 - MGP_AJ_P0047976 Cnpy3 protein_coding nonsense_mediated_decay MGP_AJ_T0047977.1 MGP_AJ_G0023789.1 mouse_genomes_project 17 46670192 46671175 - Cnpy3 protein_coding retained_intron MGP_AJ_T0047978.1 MGP_AJ_G0023789.1 mouse_genomes_project 17 46680531 46685746 - MGP_AJ_P0047978 Cnpy3 protein_coding protein_coding MGP_AJ_T0047979.1 MGP_AJ_G0023789.1 mouse_genomes_project 17 46680763 46685728 - Cnpy3 protein_coding retained_intron MGP_AJ_T0102444.1 MGP_AJ_G0040186.1 mouse_genomes_project 17 37564644 37566357 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0046438.1 MGP_AJ_G0023383.1 mouse_genomes_project 17 26121150 26173535 + MGP_AJ_P0046438 Pacsin1 protein_coding protein_coding MGP_AJ_T0046439.1 MGP_AJ_G0023383.1 mouse_genomes_project 17 26121229 26175977 + MGP_AJ_P0046439 Pacsin1 protein_coding protein_coding MGP_AJ_T0046440.1 MGP_AJ_G0023383.1 mouse_genomes_project 17 26121284 26173551 + MGP_AJ_P0046440 Pacsin1 protein_coding protein_coding MGP_AJ_T0046441.1 MGP_AJ_G0023383.1 mouse_genomes_project 17 26151911 26173535 + MGP_AJ_P0046441 Pacsin1 protein_coding protein_coding MGP_AJ_T0046442.1 MGP_AJ_G0023383.1 mouse_genomes_project 17 26151941 26152780 + Pacsin1 protein_coding processed_transcript MGP_AJ_T0045771.1 MGP_AJ_G0023215.1 mouse_genomes_project 17 21384241 21403573 - MGP_AJ_P0045771 Zfp40 protein_coding protein_coding MGP_AJ_T0045772.1 MGP_AJ_G0023215.1 mouse_genomes_project 17 21384269 21403586 - Zfp40 protein_coding processed_transcript MGP_AJ_T0045773.1 MGP_AJ_G0023215.1 mouse_genomes_project 17 21387662 21403627 - Zfp40 protein_coding processed_transcript MGP_AJ_T0045774.1 MGP_AJ_G0023215.1 mouse_genomes_project 17 21401721 21403628 - MGP_AJ_P0045774 Zfp40 protein_coding protein_coding MGP_AJ_T0048206.1 MGP_AJ_G0023863.1 mouse_genomes_project 17 56030393 56039130 + MGP_AJ_P0048206 Ccdc94 protein_coding protein_coding MGP_AJ_T0048479.1 MGP_AJ_G0023961.1 mouse_genomes_project 17 71174673 71183486 - MGP_AJ_P0048479 Myl12a protein_coding protein_coding MGP_AJ_T0048480.1 MGP_AJ_G0023961.1 mouse_genomes_project 17 71175313 71183097 - Myl12a protein_coding retained_intron MGP_AJ_T0048481.1 MGP_AJ_G0023961.1 mouse_genomes_project 17 71175313 71178952 - MGP_AJ_P0048481 Myl12a protein_coding protein_coding MGP_AJ_T0048482.1 MGP_AJ_G0023961.1 mouse_genomes_project 17 71175568 71183810 - MGP_AJ_P0048482 Myl12a protein_coding protein_coding MGP_AJ_T0048483.1 MGP_AJ_G0023961.1 mouse_genomes_project 17 71177151 71183119 - MGP_AJ_P0048483 Myl12a protein_coding protein_coding MGP_AJ_T0048484.1 MGP_AJ_G0023961.1 mouse_genomes_project 17 71177402 71183092 - Myl12a protein_coding retained_intron MGP_AJ_T0048485.1 MGP_AJ_G0023961.1 mouse_genomes_project 17 71177723 71182949 - MGP_AJ_P0048485 Myl12a protein_coding protein_coding MGP_AJ_T0047664.1 MGP_AJ_G0023664.1 mouse_genomes_project 17 36501977 36506242 + MGP_AJ_P0047664 H2-M3 protein_coding protein_coding MGP_AJ_T0010194.1 MGP_AJ_G0008316.1 mouse_genomes_project 17 29692588 29692700 + Gm24026 miRNA miRNA MGP_AJ_T0017584.1 MGP_AJ_G0015330.1 mouse_genomes_project 17 86009017 86023562 - Six3os1 processed_transcript antisense MGP_AJ_T0017585.1 MGP_AJ_G0015330.1 mouse_genomes_project 17 86010300 86026590 - Six3os1 processed_transcript antisense MGP_AJ_T0017586.1 MGP_AJ_G0015330.1 mouse_genomes_project 17 86015590 86026583 - Six3os1 processed_transcript antisense MGP_AJ_T0017587.1 MGP_AJ_G0015330.1 mouse_genomes_project 17 86016157 86026616 - Six3os1 processed_transcript antisense MGP_AJ_T0017588.1 MGP_AJ_G0015330.1 mouse_genomes_project 17 86017780 86026558 - Six3os1 processed_transcript antisense MGP_AJ_T0017589.1 MGP_AJ_G0015330.1 mouse_genomes_project 17 86018722 86026493 - Six3os1 processed_transcript antisense MGP_AJ_T0017590.1 MGP_AJ_G0015330.1 mouse_genomes_project 17 86019467 86026603 - Six3os1 processed_transcript retained_intron MGP_AJ_T0017591.1 MGP_AJ_G0015330.1 mouse_genomes_project 17 86019850 86026439 - Six3os1 processed_transcript antisense MGP_AJ_T0017592.1 MGP_AJ_G0015330.1 mouse_genomes_project 17 86019850 86026441 - Six3os1 processed_transcript antisense MGP_AJ_T0017593.1 MGP_AJ_G0015330.1 mouse_genomes_project 17 86021103 86026493 - Six3os1 processed_transcript antisense MGP_AJ_T0017594.1 MGP_AJ_G0015330.1 mouse_genomes_project 17 86021431 86024460 - Six3os1 processed_transcript antisense MGP_AJ_T0017595.1 MGP_AJ_G0015330.1 mouse_genomes_project 17 86021914 86026291 - Six3os1 processed_transcript antisense MGP_AJ_T0017596.1 MGP_AJ_G0015330.1 mouse_genomes_project 17 86021915 86026576 - Six3os1 processed_transcript antisense MGP_AJ_T0098618.1 MGP_AJ_G0036602.1 mouse_genomes_project 17 44550310 44550429 - n-R5s27 rRNA rRNA MGP_AJ_T0011427.1 MGP_AJ_G0009549.1 mouse_genomes_project 17 43856205 43856491 - Gm24532 misc_RNA misc_RNA MGP_AJ_T0000995.1 MGP_AJ_G0000926.1 mouse_genomes_project 17 71606220 71607602 - TEC TEC MGP_AJ_T0047902.1 MGP_AJ_G0023766.1 mouse_genomes_project 17 46158005 46162463 + MGP_AJ_P0047902 Yipf3 protein_coding protein_coding MGP_AJ_T0047903.1 MGP_AJ_G0023766.1 mouse_genomes_project 17 46158050 46161414 + MGP_AJ_P0047903 Yipf3 protein_coding protein_coding MGP_AJ_T0047904.1 MGP_AJ_G0023766.1 mouse_genomes_project 17 46158070 46161927 + Yipf3 protein_coding retained_intron MGP_AJ_T0047905.1 MGP_AJ_G0023766.1 mouse_genomes_project 17 46158954 46161830 + MGP_AJ_P0047905 Yipf3 protein_coding protein_coding MGP_AJ_T0047906.1 MGP_AJ_G0023766.1 mouse_genomes_project 17 46160014 46160919 + Yipf3 protein_coding processed_transcript MGP_AJ_T0047907.1 MGP_AJ_G0023766.1 mouse_genomes_project 17 46161266 46161943 + Yipf3 protein_coding processed_transcript MGP_AJ_T0102429.1 MGP_AJ_G0040171.1 mouse_genomes_project 17 35918471 35943755 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0048723.1 MGP_AJ_G0024057.1 mouse_genomes_project 17 87467761 87479607 + MGP_AJ_P0048723 Cript protein_coding protein_coding MGP_AJ_T0048724.1 MGP_AJ_G0024057.1 mouse_genomes_project 17 87467821 87470443 + Cript protein_coding retained_intron MGP_AJ_T0048725.1 MGP_AJ_G0024057.1 mouse_genomes_project 17 87467822 87479269 + MGP_AJ_P0048725 Cript protein_coding protein_coding MGP_AJ_T0003754.1 MGP_AJ_G0003374.1 mouse_genomes_project 17 34096433 34099730 - Gm20522 antisense antisense MGP_AJ_T0045641.1 MGP_AJ_G0023143.1 mouse_genomes_project 17 13132642 13152508 - MGP_AJ_P0045641 Prdm9 protein_coding protein_coding MGP_AJ_T0045642.1 MGP_AJ_G0023143.1 mouse_genomes_project 17 13133838 13144699 - Prdm9 protein_coding retained_intron MGP_AJ_T0045643.1 MGP_AJ_G0023143.1 mouse_genomes_project 17 13133951 13144231 - Prdm9 protein_coding retained_intron MGP_AJ_T0045644.1 MGP_AJ_G0023143.1 mouse_genomes_project 17 13142051 13153525 - MGP_AJ_P0045644 Prdm9 protein_coding protein_coding MGP_AJ_T0045645.1 MGP_AJ_G0023143.1 mouse_genomes_project 17 13147477 13153539 - Prdm9 protein_coding retained_intron MGP_AJ_T0045646.1 MGP_AJ_G0023143.1 mouse_genomes_project 17 13152000 13153507 - Prdm9 protein_coding processed_transcript MGP_AJ_T0048211.1 MGP_AJ_G0023867.1 mouse_genomes_project 17 56076736 56083559 + MGP_AJ_P0048211 Mpnd protein_coding protein_coding MGP_AJ_T0048212.1 MGP_AJ_G0023867.1 mouse_genomes_project 17 56080835 56088466 + MGP_AJ_P0048212 Mpnd protein_coding protein_coding MGP_AJ_T0048213.1 MGP_AJ_G0023867.1 mouse_genomes_project 17 56080842 56088322 + MGP_AJ_P0048213 Mpnd protein_coding protein_coding MGP_AJ_T0048214.1 MGP_AJ_G0023867.1 mouse_genomes_project 17 56080865 56088329 + MGP_AJ_P0048214 Mpnd protein_coding protein_coding MGP_AJ_T0048215.1 MGP_AJ_G0023867.1 mouse_genomes_project 17 56080889 56083957 + Mpnd protein_coding retained_intron MGP_AJ_T0048216.1 MGP_AJ_G0023867.1 mouse_genomes_project 17 56080967 56088290 + MGP_AJ_P0048216 Mpnd protein_coding protein_coding MGP_AJ_T0048217.1 MGP_AJ_G0023867.1 mouse_genomes_project 17 56081567 56083302 + Mpnd protein_coding retained_intron MGP_AJ_T0048218.1 MGP_AJ_G0023867.1 mouse_genomes_project 17 56082074 56087173 + MGP_AJ_P0048218 Mpnd protein_coding protein_coding MGP_AJ_T0048219.1 MGP_AJ_G0023867.1 mouse_genomes_project 17 56083577 56086688 + Mpnd protein_coding retained_intron MGP_AJ_T0000977.1 MGP_AJ_G0000909.1 mouse_genomes_project 17 8746741 8751741 + TEC TEC MGP_AJ_T0045385.1 MGP_AJ_G0023069.1 mouse_genomes_project 17 399533 601401 + MGP_AJ_P0045385 Tiam2 protein_coding protein_coding MGP_AJ_T0045386.1 MGP_AJ_G0023069.1 mouse_genomes_project 17 476519 601401 + MGP_AJ_P0045386 Tiam2 protein_coding protein_coding MGP_AJ_T0099677.1 MGP_AJ_G0037643.1 mouse_genomes_project 17 93775598 93775705 - Gm25935 snRNA snRNA MGP_AJ_T0013290.1 MGP_AJ_G0011385.1 mouse_genomes_project 17 76577972 76578419 - processed_pseudogene processed_pseudogene MGP_AJ_T0048366.1 MGP_AJ_G0023929.1 mouse_genomes_project 17 63977746 63978238 - MGP_AJ_P0048366 A930002H24Rik protein_coding protein_coding MGP_AJ_T0010199.1 MGP_AJ_G0008321.1 mouse_genomes_project 17 33731263 33731330 - Gm27471 miRNA miRNA MGP_AJ_T0102405.1 MGP_AJ_G0040147.1 mouse_genomes_project 17 33373103 33373456 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0047940.1 MGP_AJ_G0023777.1 mouse_genomes_project 17 46421483 46421983 - Cul9 protein_coding retained_intron MGP_AJ_T0047941.1 MGP_AJ_G0023777.1 mouse_genomes_project 17 46421516 46468432 - MGP_AJ_P0047941 Cul9 protein_coding protein_coding MGP_AJ_T0047942.1 MGP_AJ_G0023777.1 mouse_genomes_project 17 46421521 46440774 - Cul9 protein_coding retained_intron MGP_AJ_T0047943.1 MGP_AJ_G0023777.1 mouse_genomes_project 17 46421527 46468345 - Cul9 protein_coding retained_intron MGP_AJ_T0047944.1 MGP_AJ_G0023777.1 mouse_genomes_project 17 46422710 46445865 - Cul9 protein_coding retained_intron MGP_AJ_T0047945.1 MGP_AJ_G0023777.1 mouse_genomes_project 17 46438505 46442749 - Cul9 protein_coding retained_intron MGP_AJ_T0047946.1 MGP_AJ_G0023777.1 mouse_genomes_project 17 46439568 46440680 - Cul9 protein_coding retained_intron MGP_AJ_T0047947.1 MGP_AJ_G0023777.1 mouse_genomes_project 17 46439568 46445223 - Cul9 protein_coding retained_intron MGP_AJ_T0047948.1 MGP_AJ_G0023777.1 mouse_genomes_project 17 46450527 46459851 - Cul9 protein_coding retained_intron MGP_AJ_T0047949.1 MGP_AJ_G0023777.1 mouse_genomes_project 17 46451762 46460111 - Cul9 protein_coding retained_intron MGP_AJ_T0045488.1 MGP_AJ_G0023103.1 mouse_genomes_project 17 5931709 5939667 + MGP_AJ_P0045488 T protein_coding protein_coding MGP_AJ_T0045489.1 MGP_AJ_G0023103.1 mouse_genomes_project 17 5932211 5934163 + MGP_AJ_P0045489 T protein_coding protein_coding MGP_AJ_T0045490.1 MGP_AJ_G0023103.1 mouse_genomes_project 17 5932697 5938913 + MGP_AJ_P0045490 T protein_coding protein_coding MGP_AJ_T0100927.1 MGP_AJ_G0038893.1 mouse_genomes_project 17 54728448 54728585 + Gm26291 snoRNA snoRNA MGP_AJ_T0047771.1 MGP_AJ_G0023739.1 mouse_genomes_project 17 43975629 43983367 + MGP_AJ_P0047771 Enpp5 protein_coding protein_coding MGP_AJ_T0047772.1 MGP_AJ_G0023739.1 mouse_genomes_project 17 43975661 43983358 + MGP_AJ_P0047772 Enpp5 protein_coding protein_coding MGP_AJ_T0047773.1 MGP_AJ_G0023739.1 mouse_genomes_project 17 43975695 43983367 + MGP_AJ_P0047773 Enpp5 protein_coding nonsense_mediated_decay MGP_AJ_T0100938.1 MGP_AJ_G0038904.1 mouse_genomes_project 17 83614586 83614721 + Gm24240 snoRNA snoRNA MGP_AJ_T0047800.1 MGP_AJ_G0023749.1 mouse_genomes_project 17 45457413 45464909 + MGP_AJ_P0047800 Nfkbie protein_coding protein_coding MGP_AJ_T0047892.1 MGP_AJ_G0023763.1 mouse_genomes_project 17 46080841 46112501 - MGP_AJ_P0047892 Polh protein_coding protein_coding MGP_AJ_T0046280.1 MGP_AJ_G0023343.1 mouse_genomes_project 17 24320645 24327544 - MGP_AJ_P0046280 A930017K11Rik protein_coding protein_coding MGP_AJ_T0045595.1 MGP_AJ_G0023129.1 mouse_genomes_project 17 11834661 11843255 - MGP_AJ_P0045595 Dact2 protein_coding protein_coding MGP_AJ_T0047801.1 MGP_AJ_G0023750.1 mouse_genomes_project 17 45465804 45469418 + MGP_AJ_P0047801 Slc35b2 protein_coding protein_coding MGP_AJ_T0048028.1 MGP_AJ_G0023809.1 mouse_genomes_project 17 47562313 47575994 + MGP_AJ_P0048028 Med20 protein_coding protein_coding MGP_AJ_T0048029.1 MGP_AJ_G0023809.1 mouse_genomes_project 17 47562316 47571138 + Med20 protein_coding retained_intron MGP_AJ_T0048032.1 MGP_AJ_G0023809.1 mouse_genomes_project 17 47562339 47575824 + Med20 protein_coding retained_intron MGP_AJ_T0048034.1 MGP_AJ_G0023809.1 mouse_genomes_project 17 47562352 47564027 + Med20 protein_coding retained_intron MGP_AJ_T0010216.1 MGP_AJ_G0008338.1 mouse_genomes_project 17 56520537 56520601 - Mir6977 miRNA miRNA MGP_AJ_T0045529.1 MGP_AJ_G0023116.1 mouse_genomes_project 17 10139648 10167369 - MGP_AJ_P0045529 Slc22a1 protein_coding protein_coding MGP_AJ_T0047186.1 MGP_AJ_G0023552.1 mouse_genomes_project 17 33807305 33808904 + MGP_AJ_P0047186 Dxo protein_coding protein_coding MGP_AJ_T0047187.1 MGP_AJ_G0023552.1 mouse_genomes_project 17 33807305 33809442 + MGP_AJ_P0047187 Dxo protein_coding protein_coding MGP_AJ_T0047188.1 MGP_AJ_G0023552.1 mouse_genomes_project 17 33807305 33809489 + MGP_AJ_P0047188 Dxo protein_coding protein_coding MGP_AJ_T0047189.1 MGP_AJ_G0023552.1 mouse_genomes_project 17 33807368 33808646 + Dxo protein_coding retained_intron MGP_AJ_T0047190.1 MGP_AJ_G0023552.1 mouse_genomes_project 17 33807534 33808264 + MGP_AJ_P0047190 Dxo protein_coding protein_coding MGP_AJ_T0047191.1 MGP_AJ_G0023552.1 mouse_genomes_project 17 33807685 33809393 + MGP_AJ_P0047191 Dxo protein_coding protein_coding MGP_AJ_T0047192.1 MGP_AJ_G0023552.1 mouse_genomes_project 17 33807943 33809394 + MGP_AJ_P0047192 Dxo protein_coding nonsense_mediated_decay MGP_AJ_T0047193.1 MGP_AJ_G0023552.1 mouse_genomes_project 17 33808279 33808939 + MGP_AJ_P0047193 Dxo protein_coding nonsense_mediated_decay MGP_AJ_T0047194.1 MGP_AJ_G0023552.1 mouse_genomes_project 17 33808581 33809393 + MGP_AJ_P0047194 Dxo protein_coding nonsense_mediated_decay MGP_AJ_T0047195.1 MGP_AJ_G0023552.1 mouse_genomes_project 17 33808610 33809393 + MGP_AJ_P0047195 Dxo protein_coding protein_coding MGP_AJ_T0047196.1 MGP_AJ_G0023552.1 mouse_genomes_project 17 33808730 33809379 + MGP_AJ_P0047196 Dxo protein_coding protein_coding MGP_AJ_T0000980.1 MGP_AJ_G0000912.1 mouse_genomes_project 17 29081881 29083618 + TEC TEC MGP_AJ_T0000981.1 MGP_AJ_G0000912.1 mouse_genomes_project 17 29082731 29083185 + TEC TEC MGP_AJ_T0047739.1 MGP_AJ_G0023724.1 mouse_genomes_project 17 42169053 42379065 + MGP_AJ_P0047739 Ptchd4 protein_coding protein_coding MGP_AJ_T0006970.1 MGP_AJ_G0005731.1 mouse_genomes_project 17 54436214 54453657 - 1700025K24Rik lincRNA lincRNA MGP_AJ_T0003792.1 MGP_AJ_G0003405.1 mouse_genomes_project 17 87823305 87825529 - 0610012D04Rik antisense antisense MGP_AJ_T0048111.1 MGP_AJ_G0023831.1 mouse_genomes_project 17 48366626 48389176 - MGP_AJ_P0048111 Nfya protein_coding protein_coding MGP_AJ_T0048112.1 MGP_AJ_G0023831.1 mouse_genomes_project 17 48366630 48389317 - MGP_AJ_P0048112 Nfya protein_coding protein_coding MGP_AJ_T0048113.1 MGP_AJ_G0023831.1 mouse_genomes_project 17 48366637 48389176 - MGP_AJ_P0048113 Nfya protein_coding protein_coding MGP_AJ_T0048114.1 MGP_AJ_G0023831.1 mouse_genomes_project 17 48368746 48380283 - MGP_AJ_P0048114 Nfya protein_coding protein_coding MGP_AJ_T0048115.1 MGP_AJ_G0023831.1 mouse_genomes_project 17 48368822 48389141 - MGP_AJ_P0048115 Nfya protein_coding protein_coding MGP_AJ_T0048116.1 MGP_AJ_G0023831.1 mouse_genomes_project 17 48368850 48372956 - MGP_AJ_P0048116 Nfya protein_coding protein_coding MGP_AJ_T0048117.1 MGP_AJ_G0023831.1 mouse_genomes_project 17 48368965 48373192 - MGP_AJ_P0048117 Nfya protein_coding protein_coding MGP_AJ_T0048118.1 MGP_AJ_G0023831.1 mouse_genomes_project 17 48370621 48371887 - Nfya protein_coding retained_intron MGP_AJ_T0048119.1 MGP_AJ_G0023831.1 mouse_genomes_project 17 48371757 48378777 - MGP_AJ_P0048119 Nfya protein_coding protein_coding MGP_AJ_T0048120.1 MGP_AJ_G0023831.1 mouse_genomes_project 17 48371785 48389152 - MGP_AJ_P0048120 Nfya protein_coding protein_coding MGP_AJ_T0048121.1 MGP_AJ_G0023831.1 mouse_genomes_project 17 48372950 48375793 - Nfya protein_coding retained_intron MGP_AJ_T0048122.1 MGP_AJ_G0023831.1 mouse_genomes_project 17 48375101 48389099 - Nfya protein_coding retained_intron MGP_AJ_T0048123.1 MGP_AJ_G0023831.1 mouse_genomes_project 17 48377665 48389161 - Nfya protein_coding retained_intron MGP_AJ_T0045957.1 MGP_AJ_G0023266.1 mouse_genomes_project 17 22884331 22890850 - MGP_AJ_P0045957 Rab26 protein_coding protein_coding MGP_AJ_T0045958.1 MGP_AJ_G0023266.1 mouse_genomes_project 17 22886184 22891012 - MGP_AJ_P0045958 Rab26 protein_coding protein_coding MGP_AJ_T0045959.1 MGP_AJ_G0023266.1 mouse_genomes_project 17 22886195 22890836 - Rab26 protein_coding retained_intron MGP_AJ_T0045960.1 MGP_AJ_G0023266.1 mouse_genomes_project 17 22886451 22887079 - Rab26 protein_coding retained_intron MGP_AJ_T0045961.1 MGP_AJ_G0023266.1 mouse_genomes_project 17 22886673 22891334 - MGP_AJ_P0045961 Rab26 protein_coding protein_coding MGP_AJ_T0100916.1 MGP_AJ_G0038882.1 mouse_genomes_project 17 22885566 22885644 + Snord60 snoRNA snoRNA MGP_AJ_T0046093.1 MGP_AJ_G0023300.1 mouse_genomes_project 17 23530511 23539908 + MGP_AJ_P0046093 Ccdc154 protein_coding nonsense_mediated_decay MGP_AJ_T0046094.1 MGP_AJ_G0023300.1 mouse_genomes_project 17 23530511 23539908 + MGP_AJ_P0046094 Ccdc154 protein_coding protein_coding MGP_AJ_T0046095.1 MGP_AJ_G0023300.1 mouse_genomes_project 17 23530514 23539906 + MGP_AJ_P0046095 Ccdc154 protein_coding protein_coding MGP_AJ_T0046096.1 MGP_AJ_G0023300.1 mouse_genomes_project 17 23530892 23539877 + MGP_AJ_P0046096 Ccdc154 protein_coding protein_coding MGP_AJ_T0047120.1 MGP_AJ_G0023539.1 mouse_genomes_project 17 33487582 33489531 + MGP_AJ_P0047120 Gpsm3 protein_coding protein_coding MGP_AJ_T0047121.1 MGP_AJ_G0023539.1 mouse_genomes_project 17 33487868 33489531 + MGP_AJ_P0047121 Gpsm3 protein_coding nonsense_mediated_decay MGP_AJ_T0047122.1 MGP_AJ_G0023539.1 mouse_genomes_project 17 33488007 33489417 + MGP_AJ_P0047122 Gpsm3 protein_coding protein_coding MGP_AJ_T0017558.1 MGP_AJ_G0015319.1 mouse_genomes_project 17 28119544 28251282 + Gm28052 processed_transcript processed_transcript MGP_AJ_T0048188.1 MGP_AJ_G0023850.1 mouse_genomes_project 17 53688275 53702826 - MGP_AJ_P0048188 Sgol1 protein_coding protein_coding MGP_AJ_T0048189.1 MGP_AJ_G0023850.1 mouse_genomes_project 17 53701053 53702779 - Sgol1 protein_coding processed_transcript MGP_AJ_T0048190.1 MGP_AJ_G0023850.1 mouse_genomes_project 17 53701200 53702771 - Sgol1 protein_coding processed_transcript MGP_AJ_T0013303.1 MGP_AJ_G0011398.1 mouse_genomes_project 17 91312216 91313457 - processed_pseudogene processed_pseudogene MGP_AJ_T0046676.1 MGP_AJ_G0023433.1 mouse_genomes_project 17 28806482 29193859 - MGP_AJ_P0046676 Btbd9 protein_coding protein_coding MGP_AJ_T0046677.1 MGP_AJ_G0023433.1 mouse_genomes_project 17 28806482 29193859 - MGP_AJ_P0046677 Btbd9 protein_coding protein_coding MGP_AJ_T0046377.1 MGP_AJ_G0023368.1 mouse_genomes_project 17 25367974 25369470 - MGP_AJ_P0046377 Cuta protein_coding protein_coding MGP_AJ_T0046378.1 MGP_AJ_G0023368.1 mouse_genomes_project 17 25367974 25369480 - MGP_AJ_P0046378 Cuta protein_coding protein_coding MGP_AJ_T0047325.1 MGP_AJ_G0023578.1 mouse_genomes_project 17 34087611 34089094 - MGP_AJ_P0047325 Ly6g5b protein_coding protein_coding MGP_AJ_T0047326.1 MGP_AJ_G0023578.1 mouse_genomes_project 17 34087645 34089094 - MGP_AJ_P0047326 Ly6g5b protein_coding protein_coding MGP_AJ_T0011421.1 MGP_AJ_G0009543.1 mouse_genomes_project 17 27573594 27573765 + Gm27599 misc_RNA misc_RNA MGP_AJ_T0047612.1 MGP_AJ_G0023647.1 mouse_genomes_project 17 36133622 36138504 - MGP_AJ_P0047612 Znrd1 protein_coding protein_coding MGP_AJ_T0047613.1 MGP_AJ_G0023647.1 mouse_genomes_project 17 36133624 36138555 - MGP_AJ_P0047613 Znrd1 protein_coding protein_coding MGP_AJ_T0047614.1 MGP_AJ_G0023647.1 mouse_genomes_project 17 36133677 36138340 - MGP_AJ_P0047614 Znrd1 protein_coding protein_coding MGP_AJ_T0047615.1 MGP_AJ_G0023647.1 mouse_genomes_project 17 36133709 36138581 - Znrd1 protein_coding processed_transcript MGP_AJ_T0100932.1 MGP_AJ_G0038898.1 mouse_genomes_project 17 71851027 71851112 + Snord92 snoRNA snoRNA MGP_AJ_T0000990.1 MGP_AJ_G0000921.1 mouse_genomes_project 17 51868900 51872153 + TEC TEC MGP_AJ_T0046609.1 MGP_AJ_G0023418.1 mouse_genomes_project 17 27761267 27774954 - MGP_AJ_P0046609 Ppil1 protein_coding protein_coding MGP_AJ_T0046610.1 MGP_AJ_G0023418.1 mouse_genomes_project 17 27761687 27767344 - Ppil1 protein_coding retained_intron MGP_AJ_T0046611.1 MGP_AJ_G0023418.1 mouse_genomes_project 17 27761726 27774710 - MGP_AJ_P0046611 Ppil1 protein_coding nonsense_mediated_decay MGP_AJ_T0046612.1 MGP_AJ_G0023418.1 mouse_genomes_project 17 27771897 27774736 - Ppil1 protein_coding processed_transcript MGP_AJ_T0046574.1 MGP_AJ_G0023412.1 mouse_genomes_project 17 27459021 27471173 + MGP_AJ_P0046574 Kctd20 protein_coding protein_coding MGP_AJ_T0046575.1 MGP_AJ_G0023412.1 mouse_genomes_project 17 27459507 27478558 + MGP_AJ_P0046575 Kctd20 protein_coding protein_coding MGP_AJ_T0046576.1 MGP_AJ_G0023412.1 mouse_genomes_project 17 27459537 27474980 + MGP_AJ_P0046576 Kctd20 protein_coding protein_coding MGP_AJ_T0046577.1 MGP_AJ_G0023412.1 mouse_genomes_project 17 27459574 27474143 + Kctd20 protein_coding processed_transcript MGP_AJ_T0046578.1 MGP_AJ_G0023412.1 mouse_genomes_project 17 27459670 27474980 + MGP_AJ_P0046578 Kctd20 protein_coding protein_coding MGP_AJ_T0046579.1 MGP_AJ_G0023412.1 mouse_genomes_project 17 27459759 27472130 + MGP_AJ_P0046579 Kctd20 protein_coding protein_coding MGP_AJ_T0046580.1 MGP_AJ_G0023412.1 mouse_genomes_project 17 27460287 27474988 + MGP_AJ_P0046580 Kctd20 protein_coding protein_coding MGP_AJ_T0046581.1 MGP_AJ_G0023412.1 mouse_genomes_project 17 27460287 27474986 + MGP_AJ_P0046581 Kctd20 protein_coding protein_coding MGP_AJ_T0047713.1 MGP_AJ_G0023703.1 mouse_genomes_project 17 38290216 38292049 + MGP_AJ_P0047713 Esp24 protein_coding protein_coding MGP_AJ_T0047093.1 MGP_AJ_G0023534.1 mouse_genomes_project 17 33219758 33228410 + MGP_AJ_P0047093 Btnl1 protein_coding protein_coding MGP_AJ_T0047810.1 MGP_AJ_G0023752.1 mouse_genomes_project 17 45491921 45506481 - MGP_AJ_P0047810 Slc29a1 protein_coding protein_coding MGP_AJ_T0047811.1 MGP_AJ_G0023752.1 mouse_genomes_project 17 45491921 45499354 - MGP_AJ_P0047811 Slc29a1 protein_coding protein_coding MGP_AJ_T0047812.1 MGP_AJ_G0023752.1 mouse_genomes_project 17 45491923 45500419 - MGP_AJ_P0047812 Slc29a1 protein_coding protein_coding MGP_AJ_T0047813.1 MGP_AJ_G0023752.1 mouse_genomes_project 17 45491924 45502351 - MGP_AJ_P0047813 Slc29a1 protein_coding protein_coding MGP_AJ_T0047814.1 MGP_AJ_G0023752.1 mouse_genomes_project 17 45491924 45502684 - MGP_AJ_P0047814 Slc29a1 protein_coding protein_coding MGP_AJ_T0047815.1 MGP_AJ_G0023752.1 mouse_genomes_project 17 45491924 45502353 - MGP_AJ_P0047815 Slc29a1 protein_coding protein_coding MGP_AJ_T0047816.1 MGP_AJ_G0023752.1 mouse_genomes_project 17 45492263 45499276 - MGP_AJ_P0047816 Slc29a1 protein_coding protein_coding MGP_AJ_T0047817.1 MGP_AJ_G0023752.1 mouse_genomes_project 17 45492392 45498983 - MGP_AJ_P0047817 Slc29a1 protein_coding protein_coding MGP_AJ_T0047818.1 MGP_AJ_G0023752.1 mouse_genomes_project 17 45492939 45495462 - Slc29a1 protein_coding processed_transcript MGP_AJ_T0047819.1 MGP_AJ_G0023752.1 mouse_genomes_project 17 45495086 45502283 - MGP_AJ_P0047819 Slc29a1 protein_coding protein_coding MGP_AJ_T0047820.1 MGP_AJ_G0023752.1 mouse_genomes_project 17 45495087 45502383 - MGP_AJ_P0047820 Slc29a1 protein_coding protein_coding MGP_AJ_T0047821.1 MGP_AJ_G0023752.1 mouse_genomes_project 17 45495240 45499619 - Slc29a1 protein_coding retained_intron MGP_AJ_T0047822.1 MGP_AJ_G0023752.1 mouse_genomes_project 17 45495588 45496832 - Slc29a1 protein_coding retained_intron MGP_AJ_T0047823.1 MGP_AJ_G0023752.1 mouse_genomes_project 17 45495927 45502332 - Slc29a1 protein_coding retained_intron MGP_AJ_T0047824.1 MGP_AJ_G0023752.1 mouse_genomes_project 17 45496137 45502296 - Slc29a1 protein_coding retained_intron MGP_AJ_T0047825.1 MGP_AJ_G0023752.1 mouse_genomes_project 17 45496137 45506482 - MGP_AJ_P0047825 Slc29a1 protein_coding protein_coding MGP_AJ_T0047826.1 MGP_AJ_G0023752.1 mouse_genomes_project 17 45496237 45502633 - MGP_AJ_P0047826 Slc29a1 protein_coding protein_coding MGP_AJ_T0047827.1 MGP_AJ_G0023752.1 mouse_genomes_project 17 45496243 45500413 - MGP_AJ_P0047827 Slc29a1 protein_coding protein_coding MGP_AJ_T0047828.1 MGP_AJ_G0023752.1 mouse_genomes_project 17 45496417 45506484 - MGP_AJ_P0047828 Slc29a1 protein_coding protein_coding MGP_AJ_T0047829.1 MGP_AJ_G0023752.1 mouse_genomes_project 17 45496442 45502337 - MGP_AJ_P0047829 Slc29a1 protein_coding protein_coding MGP_AJ_T0047830.1 MGP_AJ_G0023752.1 mouse_genomes_project 17 45496492 45502283 - MGP_AJ_P0047830 Slc29a1 protein_coding protein_coding MGP_AJ_T0047831.1 MGP_AJ_G0023752.1 mouse_genomes_project 17 45496677 45502322 - MGP_AJ_P0047831 Slc29a1 protein_coding protein_coding MGP_AJ_T0047832.1 MGP_AJ_G0023752.1 mouse_genomes_project 17 45496743 45502324 - MGP_AJ_P0047832 Slc29a1 protein_coding protein_coding MGP_AJ_T0047833.1 MGP_AJ_G0023752.1 mouse_genomes_project 17 45496789 45502738 - MGP_AJ_P0047833 Slc29a1 protein_coding protein_coding MGP_AJ_T0047834.1 MGP_AJ_G0023752.1 mouse_genomes_project 17 45496832 45503846 - MGP_AJ_P0047834 Slc29a1 protein_coding protein_coding MGP_AJ_T0047285.1 MGP_AJ_G0023568.1 mouse_genomes_project 17 34002759 34004028 - Msh5 protein_coding processed_transcript MGP_AJ_T0047286.1 MGP_AJ_G0023568.1 mouse_genomes_project 17 34002759 34020529 - MGP_AJ_P0047286 Msh5 protein_coding protein_coding MGP_AJ_T0047287.1 MGP_AJ_G0023568.1 mouse_genomes_project 17 34002759 34020724 - MGP_AJ_P0047287 Msh5 protein_coding protein_coding MGP_AJ_T0047288.1 MGP_AJ_G0023568.1 mouse_genomes_project 17 34002763 34007460 - MGP_AJ_P0047288 Msh5 protein_coding nonsense_mediated_decay MGP_AJ_T0047289.1 MGP_AJ_G0023568.1 mouse_genomes_project 17 34002836 34020449 - MGP_AJ_P0047289 Msh5 protein_coding nonsense_mediated_decay MGP_AJ_T0047290.1 MGP_AJ_G0023568.1 mouse_genomes_project 17 34002836 34020449 - MGP_AJ_P0047290 Msh5 protein_coding nonsense_mediated_decay MGP_AJ_T0047291.1 MGP_AJ_G0023568.1 mouse_genomes_project 17 34010798 34020743 - MGP_AJ_P0047291 Msh5 protein_coding nonsense_mediated_decay MGP_AJ_T0047292.1 MGP_AJ_G0023568.1 mouse_genomes_project 17 34013073 34017534 - Msh5 protein_coding retained_intron MGP_AJ_T0047293.1 MGP_AJ_G0023568.1 mouse_genomes_project 17 34013073 34020432 - Msh5 protein_coding retained_intron MGP_AJ_T0047294.1 MGP_AJ_G0023568.1 mouse_genomes_project 17 34017732 34020023 - Msh5 protein_coding retained_intron MGP_AJ_T0047295.1 MGP_AJ_G0023568.1 mouse_genomes_project 17 34017741 34018778 - Msh5 protein_coding retained_intron MGP_AJ_T0047296.1 MGP_AJ_G0023568.1 mouse_genomes_project 17 34017866 34020427 - MGP_AJ_P0047296 Msh5 protein_coding nonsense_mediated_decay MGP_AJ_T0047420.1 MGP_AJ_G0023603.1 mouse_genomes_project 17 34711375 34720480 - MGP_AJ_P0047420 Dpcr1 protein_coding protein_coding MGP_AJ_T0048542.1 MGP_AJ_G0023979.1 mouse_genomes_project 17 74056948 74084715 + MGP_AJ_P0048542 Ehd3 protein_coding protein_coding MGP_AJ_T0102391.1 MGP_AJ_G0040133.1 mouse_genomes_project 17 19268584 19268767 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0006948.1 MGP_AJ_G0005716.1 mouse_genomes_project 17 34812666 34814743 - Gm20443 lincRNA lincRNA MGP_AJ_T0099670.1 MGP_AJ_G0037636.1 mouse_genomes_project 17 80380872 80380968 + Gm22215 snRNA snRNA MGP_AJ_T0046555.1 MGP_AJ_G0023407.1 mouse_genomes_project 17 27270781 27281218 + MGP_AJ_P0046555 Mapk13 protein_coding protein_coding MGP_AJ_T0046556.1 MGP_AJ_G0023407.1 mouse_genomes_project 17 27270810 27280739 + Mapk13 protein_coding retained_intron MGP_AJ_T0046557.1 MGP_AJ_G0023407.1 mouse_genomes_project 17 27270823 27281066 + MGP_AJ_P0046557 Mapk13 protein_coding nonsense_mediated_decay MGP_AJ_T0046558.1 MGP_AJ_G0023407.1 mouse_genomes_project 17 27270846 27280146 + Mapk13 protein_coding retained_intron MGP_AJ_T0098934.1 MGP_AJ_G0036912.1 mouse_genomes_project 17 73884482 73889120 - D630014O11Rik sense_intronic sense_intronic MGP_AJ_T0045623.1 MGP_AJ_G0023139.1 mouse_genomes_project 17 12987486 13024698 + MGP_AJ_P0045623 Fam120b protein_coding protein_coding MGP_AJ_T0045962.1 MGP_AJ_G0023267.1 mouse_genomes_project 17 22907172 22955268 + MGP_AJ_P0045962 Pkd1 protein_coding protein_coding MGP_AJ_T0045963.1 MGP_AJ_G0023267.1 mouse_genomes_project 17 22907487 22946417 + MGP_AJ_P0045963 Pkd1 protein_coding unknown_likely_coding MGP_AJ_T0046997.1 MGP_AJ_G0023512.1 mouse_genomes_project 17 32758711 32762443 - MGP_AJ_P0046997 H2-Q7 protein_coding protein_coding MGP_AJ_T0046196.1 MGP_AJ_G0023326.1 mouse_genomes_project 17 24159393 24163312 + MGP_AJ_P0046196 Ccdc78 protein_coding protein_coding MGP_AJ_T0102394.1 MGP_AJ_G0040136.1 mouse_genomes_project 17 21485350 21511893 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0045776.1 MGP_AJ_G0023217.1 mouse_genomes_project 17 21835424 21847608 - MGP_AJ_P0045776 Zfp13 protein_coding protein_coding MGP_AJ_T0045777.1 MGP_AJ_G0023217.1 mouse_genomes_project 17 21835431 21861131 - MGP_AJ_P0045777 Zfp13 protein_coding protein_coding MGP_AJ_T0045897.1 MGP_AJ_G0023253.1 mouse_genomes_project 17 22570451 22576204 - MGP_AJ_P0045897 1600002H07Rik protein_coding protein_coding MGP_AJ_T0045898.1 MGP_AJ_G0023253.1 mouse_genomes_project 17 22570636 22576265 - 1600002H07Rik protein_coding retained_intron MGP_AJ_T0045899.1 MGP_AJ_G0023253.1 mouse_genomes_project 17 22570943 22576106 - MGP_AJ_P0045899 1600002H07Rik protein_coding nonsense_mediated_decay MGP_AJ_T0045900.1 MGP_AJ_G0023253.1 mouse_genomes_project 17 22574592 22576145 - 1600002H07Rik protein_coding retained_intron MGP_AJ_T0045901.1 MGP_AJ_G0023253.1 mouse_genomes_project 17 22575194 22576167 - 1600002H07Rik protein_coding retained_intron MGP_AJ_T0003762.1 MGP_AJ_G0003382.1 mouse_genomes_project 17 35197956 35202719 + antisense antisense MGP_AJ_T0046980.1 MGP_AJ_G0023508.1 mouse_genomes_project 17 32732959 32734510 - MGP_AJ_P0046980 B3galt4 protein_coding protein_coding MGP_AJ_T0045732.1 MGP_AJ_G0023198.1 mouse_genomes_project 17 19545460 19552490 + MGP_AJ_P0045732 Zfp52 protein_coding protein_coding MGP_AJ_T0046006.1 MGP_AJ_G0023281.1 mouse_genomes_project 17 23102476 23108634 + MGP_AJ_P0046006 Msrb1 protein_coding protein_coding MGP_AJ_T0046007.1 MGP_AJ_G0023281.1 mouse_genomes_project 17 23102516 23108627 + MGP_AJ_P0046007 Msrb1 protein_coding protein_coding MGP_AJ_T0046200.1 MGP_AJ_G0023329.1 mouse_genomes_project 17 24181990 24194149 + MGP_AJ_P0046200 Fbxl16 protein_coding protein_coding MGP_AJ_T0048382.1 MGP_AJ_G0023938.1 mouse_genomes_project 17 65897797 65919102 + MGP_AJ_P0048382 Ppp4r1 protein_coding protein_coding MGP_AJ_T0048383.1 MGP_AJ_G0023938.1 mouse_genomes_project 17 65898004 65928644 + MGP_AJ_P0048383 Ppp4r1 protein_coding protein_coding MGP_AJ_T0048384.1 MGP_AJ_G0023938.1 mouse_genomes_project 17 65898856 65957316 + MGP_AJ_P0048384 Ppp4r1 protein_coding nonsense_mediated_decay MGP_AJ_T0048385.1 MGP_AJ_G0023938.1 mouse_genomes_project 17 65898856 65957317 + MGP_AJ_P0048385 Ppp4r1 protein_coding protein_coding MGP_AJ_T0048386.1 MGP_AJ_G0023938.1 mouse_genomes_project 17 65898856 65928870 + MGP_AJ_P0048386 Ppp4r1 protein_coding protein_coding MGP_AJ_T0048387.1 MGP_AJ_G0023938.1 mouse_genomes_project 17 65898856 65957321 + MGP_AJ_P0048387 Ppp4r1 protein_coding protein_coding MGP_AJ_T0048388.1 MGP_AJ_G0023938.1 mouse_genomes_project 17 65915232 65925806 + Ppp4r1 protein_coding processed_transcript MGP_AJ_T0048389.1 MGP_AJ_G0023938.1 mouse_genomes_project 17 65917926 65925779 + Ppp4r1 protein_coding retained_intron MGP_AJ_T0048390.1 MGP_AJ_G0023938.1 mouse_genomes_project 17 65932296 65946478 + Ppp4r1 protein_coding processed_transcript MGP_AJ_T0048391.1 MGP_AJ_G0023938.1 mouse_genomes_project 17 65935330 65957251 + Ppp4r1 protein_coding processed_transcript MGP_AJ_T0048392.1 MGP_AJ_G0023938.1 mouse_genomes_project 17 65939838 65948619 + MGP_AJ_P0048392 Ppp4r1 protein_coding nonsense_mediated_decay MGP_AJ_T0048393.1 MGP_AJ_G0023938.1 mouse_genomes_project 17 65944353 65948555 + Ppp4r1 protein_coding retained_intron MGP_AJ_T0048394.1 MGP_AJ_G0023938.1 mouse_genomes_project 17 65953283 65954376 + MGP_AJ_P0048394 Ppp4r1 protein_coding protein_coding MGP_AJ_T0047774.1 MGP_AJ_G0023740.1 mouse_genomes_project 17 43993089 44002565 - MGP_AJ_P0047774 Enpp4 protein_coding protein_coding MGP_AJ_T0047775.1 MGP_AJ_G0023740.1 mouse_genomes_project 17 43993097 44002520 - MGP_AJ_P0047775 Enpp4 protein_coding protein_coding MGP_AJ_T0047796.1 MGP_AJ_G0023745.1 mouse_genomes_project 17 45348793 45374686 - MGP_AJ_P0047796 Spats1 protein_coding protein_coding MGP_AJ_T0047579.1 MGP_AJ_G0023633.1 mouse_genomes_project 17 35532131 35535546 - MGP_AJ_P0047579 H2-M10.3 protein_coding protein_coding MGP_AJ_T0047728.1 MGP_AJ_G0023718.1 mouse_genomes_project 17 40620452 40651270 - MGP_AJ_P0047728 Crisp2 protein_coding protein_coding MGP_AJ_T0047729.1 MGP_AJ_G0023718.1 mouse_genomes_project 17 40640392 40651301 - MGP_AJ_P0047729 Crisp2 protein_coding protein_coding MGP_AJ_T0047730.1 MGP_AJ_G0023718.1 mouse_genomes_project 17 40642073 40651231 - MGP_AJ_P0047730 Crisp2 protein_coding protein_coding MGP_AJ_T0047731.1 MGP_AJ_G0023718.1 mouse_genomes_project 17 40642149 40651222 - MGP_AJ_P0047731 Crisp2 protein_coding nonsense_mediated_decay MGP_AJ_T0047732.1 MGP_AJ_G0023718.1 mouse_genomes_project 17 40650410 40658711 - Crisp2 protein_coding processed_transcript MGP_AJ_T0047569.1 MGP_AJ_G0023630.1 mouse_genomes_project 17 35407062 35417340 - MGP_AJ_P0047569 Trim39 protein_coding nonsense_mediated_decay MGP_AJ_T0047570.1 MGP_AJ_G0023630.1 mouse_genomes_project 17 35407062 35420592 - MGP_AJ_P0047570 Trim39 protein_coding protein_coding MGP_AJ_T0047571.1 MGP_AJ_G0023630.1 mouse_genomes_project 17 35407062 35420155 - MGP_AJ_P0047571 Trim39 protein_coding protein_coding MGP_AJ_T0047572.1 MGP_AJ_G0023630.1 mouse_genomes_project 17 35407299 35417808 - MGP_AJ_P0047572 Trim39 protein_coding protein_coding MGP_AJ_T0047573.1 MGP_AJ_G0023630.1 mouse_genomes_project 17 35409721 35417283 - Trim39 protein_coding processed_transcript MGP_AJ_T0047574.1 MGP_AJ_G0023630.1 mouse_genomes_project 17 35410794 35419971 - Trim39 protein_coding processed_transcript MGP_AJ_T0047575.1 MGP_AJ_G0023630.1 mouse_genomes_project 17 35410796 35420835 - Trim39 protein_coding retained_intron MGP_AJ_T0046459.1 MGP_AJ_G0023389.1 mouse_genomes_project 17 26375008 26542387 + MGP_AJ_P0046459 Anks1 protein_coding protein_coding MGP_AJ_T0046460.1 MGP_AJ_G0023389.1 mouse_genomes_project 17 26375040 26542384 + MGP_AJ_P0046460 Anks1 protein_coding protein_coding MGP_AJ_T0046461.1 MGP_AJ_G0023389.1 mouse_genomes_project 17 26375040 26542384 + MGP_AJ_P0046461 Anks1 protein_coding protein_coding MGP_AJ_T0046462.1 MGP_AJ_G0023389.1 mouse_genomes_project 17 26487207 26542386 + Anks1 protein_coding processed_transcript MGP_AJ_T0013258.1 MGP_AJ_G0011353.1 mouse_genomes_project 17 37192233 37192727 + processed_pseudogene processed_pseudogene MGP_AJ_T0046037.1 MGP_AJ_G0023292.1 mouse_genomes_project 17 23258618 23259651 + MGP_AJ_P0046037 Nme3 protein_coding protein_coding MGP_AJ_T0046038.1 MGP_AJ_G0023292.1 mouse_genomes_project 17 23258623 23259464 + Nme3 protein_coding processed_transcript MGP_AJ_T0046039.1 MGP_AJ_G0023292.1 mouse_genomes_project 17 23258639 23259373 + Nme3 protein_coding retained_intron MGP_AJ_T0046040.1 MGP_AJ_G0023292.1 mouse_genomes_project 17 23258641 23259613 + Nme3 protein_coding retained_intron MGP_AJ_T0046041.1 MGP_AJ_G0023292.1 mouse_genomes_project 17 23258879 23259476 + Nme3 protein_coding retained_intron MGP_AJ_T0046104.1 MGP_AJ_G0023303.1 mouse_genomes_project 17 23593718 23603529 + MGP_AJ_P0046104 Gm5819 protein_coding protein_coding MGP_AJ_T0047169.1 MGP_AJ_G0023547.1 mouse_genomes_project 17 33542864 33544425 + MGP_AJ_P0047169 Fkbpl protein_coding protein_coding MGP_AJ_T0047170.1 MGP_AJ_G0023547.1 mouse_genomes_project 17 33542941 33543423 + MGP_AJ_P0047170 Fkbpl protein_coding protein_coding MGP_AJ_T0098419.1 MGP_AJ_G0036403.1 mouse_genomes_project 17 36851113 36852078 - pseudogene pseudogene MGP_AJ_T0045444.1 MGP_AJ_G0023092.1 mouse_genomes_project 17 4652072 4840899 + MGP_AJ_P0045444 Rps6ka2 protein_coding unknown_likely_coding MGP_AJ_T0006924.1 MGP_AJ_G0005697.1 mouse_genomes_project 17 26199811 26205960 + Gm15458 lincRNA lincRNA MGP_AJ_T0045969.1 MGP_AJ_G0023271.1 mouse_genomes_project 17 23016415 23017552 - MGP_AJ_P0045969 Npw protein_coding protein_coding MGP_AJ_T0048592.1 MGP_AJ_G0023995.1 mouse_genomes_project 17 78867096 78959255 + MGP_AJ_P0048592 Vit protein_coding protein_coding MGP_AJ_T0047688.1 MGP_AJ_G0023684.1 mouse_genomes_project 17 36950699 36951665 + MGP_AJ_P0047688 protein_coding protein_coding MGP_AJ_T0045438.1 MGP_AJ_G0023087.1 mouse_genomes_project 17 4107528 4193600 - MGP_AJ_P0045438 protein_coding protein_coding MGP_AJ_T0048441.1 MGP_AJ_G0023953.1 mouse_genomes_project 17 69002073 69008082 + MGP_AJ_P0048441 Tmem200c protein_coding protein_coding MGP_AJ_T0099667.1 MGP_AJ_G0037633.1 mouse_genomes_project 17 72736755 72736885 - Gm24736 snRNA snRNA MGP_AJ_T0048101.1 MGP_AJ_G0023827.1 mouse_genomes_project 17 48277052 48289291 + MGP_AJ_P0048101 Treml2 protein_coding protein_coding MGP_AJ_T0006936.1 MGP_AJ_G0005705.1 mouse_genomes_project 17 30306001 30307986 + 4833413E03Rik lincRNA lincRNA MGP_AJ_T0006937.1 MGP_AJ_G0005705.1 mouse_genomes_project 17 30307067 30307989 + 4833413E03Rik lincRNA lincRNA MGP_AJ_T0011431.1 MGP_AJ_G0009553.1 mouse_genomes_project 17 61349552 61349848 + Gm23773 misc_RNA misc_RNA MGP_AJ_T0048641.1 MGP_AJ_G0024017.1 mouse_genomes_project 17 80595748 80660143 - MGP_AJ_P0048641 Dhx57 protein_coding protein_coding MGP_AJ_T0048642.1 MGP_AJ_G0024017.1 mouse_genomes_project 17 80595748 80660143 - MGP_AJ_P0048642 Dhx57 protein_coding protein_coding MGP_AJ_T0045683.1 MGP_AJ_G0023159.1 mouse_genomes_project 17 16105813 17129678 + MGP_AJ_P0045683 protein_coding protein_coding MGP_AJ_T0048544.1 MGP_AJ_G0023981.1 mouse_genomes_project 17 74279169 74309895 - MGP_AJ_P0048544 Srd5a2 protein_coding protein_coding MGP_AJ_T0013297.1 MGP_AJ_G0011392.1 mouse_genomes_project 17 85303980 85304524 + processed_pseudogene processed_pseudogene MGP_AJ_T0099671.1 MGP_AJ_G0037637.1 mouse_genomes_project 17 80453742 80453848 + Gm23125 snRNA snRNA MGP_AJ_T0010204.1 MGP_AJ_G0008326.1 mouse_genomes_project 17 34174804 34174887 - Mir6974 miRNA miRNA MGP_AJ_T0046569.1 MGP_AJ_G0023409.1 mouse_genomes_project 17 27362061 27395620 + MGP_AJ_P0046569 Pnpla1 protein_coding protein_coding MGP_AJ_T0046570.1 MGP_AJ_G0023409.1 mouse_genomes_project 17 27362061 27395620 + MGP_AJ_P0046570 Pnpla1 protein_coding protein_coding MGP_AJ_T0047503.1 MGP_AJ_G0023615.1 mouse_genomes_project 17 34980624 34993453 - MGP_AJ_P0047503 Atat1 protein_coding protein_coding MGP_AJ_T0047504.1 MGP_AJ_G0023615.1 mouse_genomes_project 17 34980638 34993424 - MGP_AJ_P0047504 Atat1 protein_coding protein_coding MGP_AJ_T0047505.1 MGP_AJ_G0023615.1 mouse_genomes_project 17 34980641 34993435 - MGP_AJ_P0047505 Atat1 protein_coding protein_coding MGP_AJ_T0047506.1 MGP_AJ_G0023615.1 mouse_genomes_project 17 34980644 34981612 - Atat1 protein_coding retained_intron MGP_AJ_T0047507.1 MGP_AJ_G0023615.1 mouse_genomes_project 17 34980911 34992339 - MGP_AJ_P0047507 Atat1 protein_coding nonsense_mediated_decay MGP_AJ_T0047508.1 MGP_AJ_G0023615.1 mouse_genomes_project 17 34982964 34993423 - MGP_AJ_P0047508 Atat1 protein_coding protein_coding MGP_AJ_T0047509.1 MGP_AJ_G0023615.1 mouse_genomes_project 17 34982999 34993423 - MGP_AJ_P0047509 Atat1 protein_coding protein_coding MGP_AJ_T0047510.1 MGP_AJ_G0023615.1 mouse_genomes_project 17 34983640 34987597 - MGP_AJ_P0047510 Atat1 protein_coding protein_coding MGP_AJ_T0047511.1 MGP_AJ_G0023615.1 mouse_genomes_project 17 34985183 34992813 - Atat1 protein_coding retained_intron MGP_AJ_T0047512.1 MGP_AJ_G0023615.1 mouse_genomes_project 17 34985200 34992951 - Atat1 protein_coding processed_transcript MGP_AJ_T0047513.1 MGP_AJ_G0023615.1 mouse_genomes_project 17 34985204 34992417 - Atat1 protein_coding retained_intron MGP_AJ_T0047514.1 MGP_AJ_G0023615.1 mouse_genomes_project 17 34985237 34993004 - MGP_AJ_P0047514 Atat1 protein_coding protein_coding MGP_AJ_T0047515.1 MGP_AJ_G0023615.1 mouse_genomes_project 17 34986600 34993117 - Atat1 protein_coding retained_intron MGP_AJ_T0047516.1 MGP_AJ_G0023615.1 mouse_genomes_project 17 34991342 34993423 - Atat1 protein_coding processed_transcript MGP_AJ_T0047517.1 MGP_AJ_G0023615.1 mouse_genomes_project 17 34991961 34993409 - MGP_AJ_P0047517 Atat1 protein_coding nonsense_mediated_decay MGP_AJ_T0047518.1 MGP_AJ_G0023615.1 mouse_genomes_project 17 34992308 34993387 - Atat1 protein_coding retained_intron MGP_AJ_T0046924.1 MGP_AJ_G0023498.1 mouse_genomes_project 17 32603486 32617919 + MGP_AJ_P0046924 Ndufa7 protein_coding protein_coding MGP_AJ_T0046925.1 MGP_AJ_G0023498.1 mouse_genomes_project 17 32603489 32605019 + Ndufa7 protein_coding retained_intron MGP_AJ_T0046926.1 MGP_AJ_G0023498.1 mouse_genomes_project 17 32603499 32617912 + MGP_AJ_P0046926 Ndufa7 protein_coding nonsense_mediated_decay MGP_AJ_T0046927.1 MGP_AJ_G0023498.1 mouse_genomes_project 17 32603540 32604742 + Ndufa7 protein_coding retained_intron MGP_AJ_T0046928.1 MGP_AJ_G0023498.1 mouse_genomes_project 17 32603940 32617785 + Ndufa7 protein_coding processed_transcript MGP_AJ_T0046929.1 MGP_AJ_G0023498.1 mouse_genomes_project 17 32604516 32617789 + Ndufa7 protein_coding processed_transcript MGP_AJ_T0046930.1 MGP_AJ_G0023498.1 mouse_genomes_project 17 32608019 32617912 + Ndufa7 protein_coding processed_transcript MGP_AJ_T0046931.1 MGP_AJ_G0023498.1 mouse_genomes_project 17 32608254 32617897 + Ndufa7 protein_coding processed_transcript MGP_AJ_T0046932.1 MGP_AJ_G0023498.1 mouse_genomes_project 17 32608288 32617917 + Ndufa7 protein_coding retained_intron MGP_AJ_T0045734.1 MGP_AJ_G0023200.1 mouse_genomes_project 17 19641246 19646203 + MGP_AJ_P0045734 Zfp983 protein_coding protein_coding MGP_AJ_T0017540.1 MGP_AJ_G0015311.1 mouse_genomes_project 17 8314958 8333846 + Gm16169 processed_transcript antisense MGP_AJ_T0017541.1 MGP_AJ_G0015311.1 mouse_genomes_project 17 8314963 8323693 + Gm16169 processed_transcript retained_intron MGP_AJ_T0046361.1 MGP_AJ_G0023364.1 mouse_genomes_project 17 25111098 25179579 + MGP_AJ_P0046361 Crebrf protein_coding protein_coding MGP_AJ_T0046362.1 MGP_AJ_G0023364.1 mouse_genomes_project 17 25111103 25140115 + MGP_AJ_P0046362 Crebrf protein_coding protein_coding MGP_AJ_T0046363.1 MGP_AJ_G0023364.1 mouse_genomes_project 17 25111158 25160999 + MGP_AJ_P0046363 Crebrf protein_coding protein_coding MGP_AJ_T0046364.1 MGP_AJ_G0023364.1 mouse_genomes_project 17 25111172 25159038 + MGP_AJ_P0046364 Crebrf protein_coding protein_coding MGP_AJ_T0046365.1 MGP_AJ_G0023364.1 mouse_genomes_project 17 25140139 25154927 + Crebrf protein_coding retained_intron MGP_AJ_T0046366.1 MGP_AJ_G0023364.1 mouse_genomes_project 17 25154441 25156659 + Crebrf protein_coding retained_intron MGP_AJ_T0046106.1 MGP_AJ_G0023304.1 mouse_genomes_project 17 23604992 23610733 - MGP_AJ_P0046106 Gnptg protein_coding protein_coding MGP_AJ_T0046107.1 MGP_AJ_G0023304.1 mouse_genomes_project 17 23605978 23610725 - MGP_AJ_P0046107 Gnptg protein_coding protein_coding MGP_AJ_T0003772.1 MGP_AJ_G0003389.1 mouse_genomes_project 17 45567150 45571323 + Gm16172 antisense antisense MGP_AJ_T0048179.1 MGP_AJ_G0023847.1 mouse_genomes_project 17 53480608 53508718 + MGP_AJ_P0048179 Rab5a protein_coding protein_coding MGP_AJ_T0045543.1 MGP_AJ_G0023120.1 mouse_genomes_project 17 10386809 10411558 - MGP_AJ_P0045543 Pnldc1 protein_coding protein_coding MGP_AJ_T0098418.1 MGP_AJ_G0036402.1 mouse_genomes_project 17 36819838 36820802 - pseudogene pseudogene MGP_AJ_T0017580.1 MGP_AJ_G0015328.1 mouse_genomes_project 17 49428039 49429343 - Gm20540 processed_transcript processed_transcript MGP_AJ_T0048159.1 MGP_AJ_G0023842.1 mouse_genomes_project 17 50537554 50712555 + MGP_AJ_P0048159 Plcl2 protein_coding unknown_likely_coding MGP_AJ_T0045974.1 MGP_AJ_G0023275.1 mouse_genomes_project 17 23059999 23064301 + MGP_AJ_P0045974 Noxo1 protein_coding protein_coding MGP_AJ_T0045976.1 MGP_AJ_G0023275.1 mouse_genomes_project 17 23061794 23062127 + Noxo1 protein_coding processed_transcript MGP_AJ_T0045977.1 MGP_AJ_G0023275.1 mouse_genomes_project 17 23061947 23063174 + Noxo1 protein_coding processed_transcript MGP_AJ_T0045978.1 MGP_AJ_G0023275.1 mouse_genomes_project 17 23062004 23064297 + Noxo1 protein_coding retained_intron MGP_AJ_T0045979.1 MGP_AJ_G0023275.1 mouse_genomes_project 17 23062010 23064085 + Noxo1 protein_coding retained_intron MGP_AJ_T0045980.1 MGP_AJ_G0023275.1 mouse_genomes_project 17 23062083 23062938 + Noxo1 protein_coding retained_intron MGP_AJ_T0045981.1 MGP_AJ_G0023275.1 mouse_genomes_project 17 23062112 23063450 + Noxo1 protein_coding processed_transcript MGP_AJ_T0045982.1 MGP_AJ_G0023275.1 mouse_genomes_project 17 23062297 23064296 + Noxo1 protein_coding processed_transcript MGP_AJ_T0045983.1 MGP_AJ_G0023275.1 mouse_genomes_project 17 23063164 23064288 + Noxo1 protein_coding processed_transcript MGP_AJ_T0048202.1 MGP_AJ_G0023859.1 mouse_genomes_project 17 55922332 55928947 - MGP_AJ_P0048202 Zfp119a protein_coding protein_coding MGP_AJ_T0048138.1 MGP_AJ_G0023836.1 mouse_genomes_project 17 48930746 49094930 + MGP_AJ_P0048138 Lrfn2 protein_coding protein_coding MGP_AJ_T0048708.1 MGP_AJ_G0024048.1 mouse_genomes_project 17 86098909 86102867 - MGP_AJ_P0048708 Six2 protein_coding protein_coding MGP_AJ_T0099643.1 MGP_AJ_G0037609.1 mouse_genomes_project 17 13437482 13437589 - Gm25598 snRNA snRNA MGP_AJ_T0047748.1 MGP_AJ_G0023730.1 mouse_genomes_project 17 43153234 43211656 + MGP_AJ_P0047748 Adgrf1 protein_coding protein_coding MGP_AJ_T0047662.1 MGP_AJ_G0023662.1 mouse_genomes_project 17 36463119 36464240 - MGP_AJ_P0047662 Olfr97 protein_coding protein_coding MGP_AJ_T0047923.1 MGP_AJ_G0023771.1 mouse_genomes_project 17 46304292 46335045 + MGP_AJ_P0047923 Zfp318 protein_coding protein_coding MGP_AJ_T0047924.1 MGP_AJ_G0023771.1 mouse_genomes_project 17 46304312 46341147 + MGP_AJ_P0047924 Zfp318 protein_coding protein_coding MGP_AJ_T0047925.1 MGP_AJ_G0023771.1 mouse_genomes_project 17 46320495 46330949 + MGP_AJ_P0047925 Zfp318 protein_coding nonsense_mediated_decay MGP_AJ_T0047926.1 MGP_AJ_G0023771.1 mouse_genomes_project 17 46326294 46329592 + Zfp318 protein_coding retained_intron MGP_AJ_T0047927.1 MGP_AJ_G0023771.1 mouse_genomes_project 17 46329859 46331552 + Zfp318 protein_coding retained_intron MGP_AJ_T0006906.1 MGP_AJ_G0005682.1 mouse_genomes_project 17 12964597 12969073 + A930024N18Rik lincRNA lincRNA MGP_AJ_T0011418.1 MGP_AJ_G0009540.1 mouse_genomes_project 17 10268857 10269109 + Gm23833 misc_RNA misc_RNA MGP_AJ_T0101964.1 MGP_AJ_G0039802.1 mouse_genomes_project 17 30842419 30858130 - transcribed_unprocessed_pseudogene processed_transcript MGP_AJ_T0101965.1 MGP_AJ_G0039802.1 mouse_genomes_project 17 30842838 30866654 - transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_AJ_T0101966.1 MGP_AJ_G0039802.1 mouse_genomes_project 17 30845143 30874419 - transcribed_unprocessed_pseudogene processed_transcript MGP_AJ_T0010171.1 MGP_AJ_G0008293.1 mouse_genomes_project 17 15481944 15482037 + Mirlet7e miRNA miRNA MGP_AJ_T0000985.1 MGP_AJ_G0000916.1 mouse_genomes_project 17 51783784 51787976 - TEC TEC MGP_AJ_T0003734.1 MGP_AJ_G0003362.1 mouse_genomes_project 17 27434958 27446676 + Gm16191 antisense antisense MGP_AJ_T0003735.1 MGP_AJ_G0003362.1 mouse_genomes_project 17 27443911 27444569 + Gm16191 antisense antisense MGP_AJ_T0100929.1 MGP_AJ_G0038895.1 mouse_genomes_project 17 62557338 62557472 - Gm25800 snoRNA snoRNA MGP_AJ_T0048379.1 MGP_AJ_G0023935.1 mouse_genomes_project 17 65692618 65726250 - MGP_AJ_P0048379 Vapa protein_coding protein_coding MGP_AJ_T0048757.1 MGP_AJ_G0024065.1 mouse_genomes_project 17 88241093 88292037 - MGP_AJ_P0048757 Kcnk12 protein_coding protein_coding MGP_AJ_T0047698.1 MGP_AJ_G0023693.1 mouse_genomes_project 17 37325944 37332668 - MGP_AJ_P0047698 Olfr131 protein_coding protein_coding MGP_AJ_T0047699.1 MGP_AJ_G0023693.1 mouse_genomes_project 17 37325944 37326974 - MGP_AJ_P0047699 Olfr131 protein_coding protein_coding MGP_AJ_T0047790.1 MGP_AJ_G0023743.1 mouse_genomes_project 17 44685839 45014842 + MGP_AJ_P0047790 Supt3 protein_coding protein_coding MGP_AJ_T0047791.1 MGP_AJ_G0023743.1 mouse_genomes_project 17 44686012 44833368 + Supt3 protein_coding processed_transcript MGP_AJ_T0047792.1 MGP_AJ_G0023743.1 mouse_genomes_project 17 44686083 45014838 + MGP_AJ_P0047792 Supt3 protein_coding protein_coding MGP_AJ_T0047793.1 MGP_AJ_G0023743.1 mouse_genomes_project 17 44695670 45014831 + MGP_AJ_P0047793 Supt3 protein_coding protein_coding MGP_AJ_T0102373.1 MGP_AJ_G0040115.1 mouse_genomes_project 17 16551536 16995633 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0102402.1 MGP_AJ_G0040144.1 mouse_genomes_project 17 33184743 33186450 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0000998.1 MGP_AJ_G0000929.1 mouse_genomes_project 17 89054213 89054394 + TEC TEC MGP_AJ_T0047223.1 MGP_AJ_G0023557.1 mouse_genomes_project 17 33832810 33853023 - MGP_AJ_P0047223 C2 protein_coding protein_coding MGP_AJ_T0047224.1 MGP_AJ_G0023557.1 mouse_genomes_project 17 33832811 33853097 - MGP_AJ_P0047224 C2 protein_coding protein_coding MGP_AJ_T0047225.1 MGP_AJ_G0023557.1 mouse_genomes_project 17 33832812 33866548 - MGP_AJ_P0047225 C2 protein_coding protein_coding MGP_AJ_T0047226.1 MGP_AJ_G0023557.1 mouse_genomes_project 17 33833875 33834616 - MGP_AJ_P0047226 C2 protein_coding protein_coding MGP_AJ_T0047227.1 MGP_AJ_G0023557.1 mouse_genomes_project 17 33834372 33835156 - C2 protein_coding retained_intron MGP_AJ_T0047228.1 MGP_AJ_G0023557.1 mouse_genomes_project 17 33847271 33852964 - C2 protein_coding processed_transcript MGP_AJ_T0047230.1 MGP_AJ_G0023557.1 mouse_genomes_project 17 33864354 33866558 - C2 protein_coding processed_transcript MGP_AJ_T0047231.1 MGP_AJ_G0023557.1 mouse_genomes_project 17 33864357 33871954 - C2 protein_coding processed_transcript MGP_AJ_T0048043.1 MGP_AJ_G0023814.1 mouse_genomes_project 17 47640528 47643483 - MGP_AJ_P0048043 Prickle4 protein_coding protein_coding MGP_AJ_T0048044.1 MGP_AJ_G0023814.1 mouse_genomes_project 17 47640528 47644473 - MGP_AJ_P0048044 Prickle4 protein_coding protein_coding MGP_AJ_T0048045.1 MGP_AJ_G0023814.1 mouse_genomes_project 17 47640630 47642903 - Prickle4 protein_coding retained_intron MGP_AJ_T0048047.1 MGP_AJ_G0023814.1 mouse_genomes_project 17 47641589 47643410 - MGP_AJ_P0048047 Prickle4 protein_coding protein_coding MGP_AJ_T0048048.1 MGP_AJ_G0023814.1 mouse_genomes_project 17 47644222 47646745 - Prickle4 protein_coding retained_intron MGP_AJ_T0101751.1 MGP_AJ_G0039681.1 mouse_genomes_project 17 85095899 85096046 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0047616.1 MGP_AJ_G0023648.1 mouse_genomes_project 17 36138613 36147351 + MGP_AJ_P0047616 Znrd1as protein_coding protein_coding MGP_AJ_T0047617.1 MGP_AJ_G0023648.1 mouse_genomes_project 17 36138640 36146619 + Znrd1as protein_coding retained_intron MGP_AJ_T0047618.1 MGP_AJ_G0023648.1 mouse_genomes_project 17 36138662 36147350 + MGP_AJ_P0047618 Znrd1as protein_coding protein_coding MGP_AJ_T0000984.1 MGP_AJ_G0000915.1 mouse_genomes_project 17 51769328 51772484 - TEC TEC MGP_AJ_T0046699.1 MGP_AJ_G0023445.1 mouse_genomes_project 17 30033241 30089937 + MGP_AJ_P0046699 Slc37a1 protein_coding protein_coding MGP_AJ_T0046700.1 MGP_AJ_G0023445.1 mouse_genomes_project 17 30033977 30089937 + MGP_AJ_P0046700 Slc37a1 protein_coding protein_coding MGP_AJ_T0045792.1 MGP_AJ_G0023221.1 mouse_genomes_project 17 21933344 21934375 - Thoc6 protein_coding retained_intron MGP_AJ_T0045793.1 MGP_AJ_G0023221.1 mouse_genomes_project 17 21933348 21939472 - Thoc6 protein_coding retained_intron MGP_AJ_T0045794.1 MGP_AJ_G0023221.1 mouse_genomes_project 17 21933348 21939512 - MGP_AJ_P0045794 Thoc6 protein_coding protein_coding MGP_AJ_T0045795.1 MGP_AJ_G0023221.1 mouse_genomes_project 17 21933348 21939472 - MGP_AJ_P0045795 Thoc6 protein_coding protein_coding MGP_AJ_T0045796.1 MGP_AJ_G0023221.1 mouse_genomes_project 17 21933527 21939235 - MGP_AJ_P0045796 Thoc6 protein_coding protein_coding MGP_AJ_T0045797.1 MGP_AJ_G0023221.1 mouse_genomes_project 17 21933527 21939459 - MGP_AJ_P0045797 Thoc6 protein_coding protein_coding MGP_AJ_T0045798.1 MGP_AJ_G0023221.1 mouse_genomes_project 17 21933931 21935240 - MGP_AJ_P0045798 Thoc6 protein_coding protein_coding MGP_AJ_T0045799.1 MGP_AJ_G0023221.1 mouse_genomes_project 17 21935052 21939501 - MGP_AJ_P0045799 Thoc6 protein_coding protein_coding MGP_AJ_T0048221.1 MGP_AJ_G0023869.1 mouse_genomes_project 17 56113968 56144537 + MGP_AJ_P0048221 Chaf1a protein_coding protein_coding MGP_AJ_T0011425.1 MGP_AJ_G0009547.1 mouse_genomes_project 17 36146034 36146110 - Gm27735 misc_RNA misc_RNA MGP_AJ_T0048110.1 MGP_AJ_G0023830.1 mouse_genomes_project 17 48338578 48345875 + MGP_AJ_P0048110 Treml1 protein_coding protein_coding MGP_AJ_T0011426.1 MGP_AJ_G0009548.1 mouse_genomes_project 17 36197354 36197602 + Gm22388 misc_RNA misc_RNA MGP_AJ_T0046821.1 MGP_AJ_G0023471.1 mouse_genomes_project 17 31611727 31627138 - MGP_AJ_P0046821 Zfp799 protein_coding protein_coding MGP_AJ_T0046822.1 MGP_AJ_G0023471.1 mouse_genomes_project 17 31611733 31618976 - MGP_AJ_P0046822 Zfp799 protein_coding protein_coding MGP_AJ_T0046823.1 MGP_AJ_G0023471.1 mouse_genomes_project 17 31617599 31627105 - MGP_AJ_P0046823 Zfp799 protein_coding protein_coding MGP_AJ_T0046824.1 MGP_AJ_G0023471.1 mouse_genomes_project 17 31617853 31627123 - MGP_AJ_P0046824 Zfp799 protein_coding protein_coding MGP_AJ_T0046825.1 MGP_AJ_G0023471.1 mouse_genomes_project 17 31618217 31627092 - MGP_AJ_P0046825 Zfp799 protein_coding protein_coding MGP_AJ_T0102446.1 MGP_AJ_G0040188.1 mouse_genomes_project 17 53940261 53940822 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0048236.1 MGP_AJ_G0023875.1 mouse_genomes_project 17 56252451 56263924 + MGP_AJ_P0048236 Tnfaip8l1 protein_coding protein_coding MGP_AJ_T0048704.1 MGP_AJ_G0024046.1 mouse_genomes_project 17 85487372 85863067 + MGP_AJ_P0048704 Camkmt protein_coding protein_coding MGP_AJ_T0045457.1 MGP_AJ_G0023095.1 mouse_genomes_project 17 5431373 5440675 + MGP_AJ_P0045457 protein_coding protein_coding MGP_AJ_T0045655.1 MGP_AJ_G0023146.1 mouse_genomes_project 17 15061123 15122167 + MGP_AJ_P0045655 Lix1 protein_coding protein_coding MGP_AJ_T0045656.1 MGP_AJ_G0023146.1 mouse_genomes_project 17 15109049 15122167 + Lix1 protein_coding processed_transcript MGP_AJ_T0047720.1 MGP_AJ_G0023710.1 mouse_genomes_project 17 40072930 40096224 - MGP_AJ_P0047720 Crisp3 protein_coding protein_coding MGP_AJ_T0048697.1 MGP_AJ_G0024043.1 mouse_genomes_project 17 85349329 85420117 + MGP_AJ_P0048697 Ppm1b protein_coding protein_coding MGP_AJ_T0048698.1 MGP_AJ_G0024043.1 mouse_genomes_project 17 85350588 85410056 + MGP_AJ_P0048698 Ppm1b protein_coding protein_coding MGP_AJ_T0048699.1 MGP_AJ_G0024043.1 mouse_genomes_project 17 85350588 85411896 + MGP_AJ_P0048699 Ppm1b protein_coding protein_coding MGP_AJ_T0048700.1 MGP_AJ_G0024043.1 mouse_genomes_project 17 85388166 85420117 + MGP_AJ_P0048700 Ppm1b protein_coding protein_coding MGP_AJ_T0048380.1 MGP_AJ_G0023936.1 mouse_genomes_project 17 65750112 65754727 - MGP_AJ_P0048380 Txndc2 protein_coding protein_coding MGP_AJ_T0010192.1 MGP_AJ_G0008314.1 mouse_genomes_project 17 27043539 27043600 - Mir6969 miRNA miRNA MGP_AJ_T0047749.1 MGP_AJ_G0023731.1 mouse_genomes_project 17 43282836 43353781 + MGP_AJ_P0047749 Adgrf5 protein_coding unknown_likely_coding MGP_AJ_T0047750.1 MGP_AJ_G0023731.1 mouse_genomes_project 17 43282861 43353781 + MGP_AJ_P0047750 Adgrf5 protein_coding protein_coding MGP_AJ_T0003744.1 MGP_AJ_G0003368.1 mouse_genomes_project 17 32690739 32691767 - BC051226 antisense antisense MGP_AJ_T0003745.1 MGP_AJ_G0003368.1 mouse_genomes_project 17 32690742 32691736 - BC051226 antisense antisense MGP_AJ_T0003746.1 MGP_AJ_G0003368.1 mouse_genomes_project 17 32690851 32691875 - BC051226 antisense antisense MGP_AJ_T0047580.1 MGP_AJ_G0023634.1 mouse_genomes_project 17 35642882 35646300 - MGP_AJ_P0047580 H2-M10.4 protein_coding protein_coding MGP_AJ_T0047372.1 MGP_AJ_G0023586.1 mouse_genomes_project 17 34164635 34166500 + MGP_AJ_P0047372 Ltb protein_coding protein_coding MGP_AJ_T0047373.1 MGP_AJ_G0023586.1 mouse_genomes_project 17 34164719 34166503 + Ltb protein_coding retained_intron MGP_AJ_T0047374.1 MGP_AJ_G0023586.1 mouse_genomes_project 17 34164822 34166518 + MGP_AJ_P0047374 Ltb protein_coding protein_coding MGP_AJ_T0046282.1 MGP_AJ_G0023345.1 mouse_genomes_project 17 24333564 24360861 - MGP_AJ_P0046282 Capn15 protein_coding unknown_likely_coding MGP_AJ_T0046283.1 MGP_AJ_G0023345.1 mouse_genomes_project 17 24334758 24360840 - MGP_AJ_P0046283 Capn15 protein_coding protein_coding MGP_AJ_T0048233.1 MGP_AJ_G0023873.1 mouse_genomes_project 17 56209826 56212093 - MGP_AJ_P0048233 Lrg1 protein_coding protein_coding MGP_AJ_T0048300.1 MGP_AJ_G0023897.1 mouse_genomes_project 17 56887167 56889126 + Prr22 protein_coding retained_intron MGP_AJ_T0048301.1 MGP_AJ_G0023897.1 mouse_genomes_project 17 56887193 56889052 + MGP_AJ_P0048301 Prr22 protein_coding protein_coding MGP_AJ_T0045486.1 MGP_AJ_G0023102.1 mouse_genomes_project 17 5835169 5838920 + MGP_AJ_P0045486 Prr18 protein_coding protein_coding MGP_AJ_T0045487.1 MGP_AJ_G0023102.1 mouse_genomes_project 17 5835502 5838920 + MGP_AJ_P0045487 Prr18 protein_coding protein_coding MGP_AJ_T0047307.1 MGP_AJ_G0023573.1 mouse_genomes_project 17 34045143 34048248 - MGP_AJ_P0047307 Ly6g6d protein_coding protein_coding MGP_AJ_T0047308.1 MGP_AJ_G0023573.1 mouse_genomes_project 17 34045177 34051810 - Ly6g6d protein_coding processed_transcript MGP_AJ_T0047309.1 MGP_AJ_G0023573.1 mouse_genomes_project 17 34045245 34048212 - Ly6g6d protein_coding retained_intron MGP_AJ_T0047310.1 MGP_AJ_G0023573.1 mouse_genomes_project 17 34047657 34051810 - Ly6g6d protein_coding retained_intron MGP_AJ_T0047311.1 MGP_AJ_G0023573.1 mouse_genomes_project 17 34047960 34051801 - Ly6g6d protein_coding processed_transcript MGP_AJ_T0045680.1 MGP_AJ_G0023156.1 mouse_genomes_project 17 15707871 15734103 + MGP_AJ_P0045680 Vmn2r124 protein_coding protein_coding MGP_AJ_T0100912.1 MGP_AJ_G0038878.1 mouse_genomes_project 17 9791133 9791273 + Gm24794 snoRNA snoRNA MGP_AJ_T0102408.1 MGP_AJ_G0040150.1 mouse_genomes_project 17 33663186 33766074 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0046215.1 MGP_AJ_G0023334.1 mouse_genomes_project 17 24207367 24210196 - MGP_AJ_P0046215 Rhbdl1 protein_coding protein_coding MGP_AJ_T0046216.1 MGP_AJ_G0023334.1 mouse_genomes_project 17 24207504 24209983 - MGP_AJ_P0046216 Rhbdl1 protein_coding protein_coding MGP_AJ_T0046217.1 MGP_AJ_G0023334.1 mouse_genomes_project 17 24208673 24210152 - MGP_AJ_P0046217 Rhbdl1 protein_coding protein_coding MGP_AJ_T0047705.1 MGP_AJ_G0023699.1 mouse_genomes_project 17 37514257 37527750 + MGP_AJ_P0047705 Olfr138 protein_coding protein_coding MGP_AJ_T0047706.1 MGP_AJ_G0023699.1 mouse_genomes_project 17 37514258 37528610 + MGP_AJ_P0047706 Olfr138 protein_coding protein_coding MGP_AJ_T0047707.1 MGP_AJ_G0023699.1 mouse_genomes_project 17 37514268 37528040 + MGP_AJ_P0047707 Olfr138 protein_coding protein_coding MGP_AJ_T0047708.1 MGP_AJ_G0023699.1 mouse_genomes_project 17 37527671 37528610 + MGP_AJ_P0047708 Olfr138 protein_coding protein_coding MGP_AJ_T0007001.1 MGP_AJ_G0005753.1 mouse_genomes_project 17 95366370 95368253 + Gm26734 lincRNA lincRNA MGP_AJ_T0046682.1 MGP_AJ_G0023437.1 mouse_genomes_project 17 29679673 29737129 + MGP_AJ_P0046682 Umodl1 protein_coding protein_coding MGP_AJ_T0046683.1 MGP_AJ_G0023437.1 mouse_genomes_project 17 29679673 29737129 + MGP_AJ_P0046683 Umodl1 protein_coding protein_coding MGP_AJ_T0046684.1 MGP_AJ_G0023437.1 mouse_genomes_project 17 29679677 29737129 + MGP_AJ_P0046684 Umodl1 protein_coding protein_coding MGP_AJ_T0046685.1 MGP_AJ_G0023437.1 mouse_genomes_project 17 29679742 29735161 + MGP_AJ_P0046685 Umodl1 protein_coding unknown_likely_coding MGP_AJ_T0046137.1 MGP_AJ_G0023312.1 mouse_genomes_project 17 23738128 23739673 + MGP_AJ_P0046137 Tpsb2 protein_coding protein_coding MGP_AJ_T0011808.1 MGP_AJ_G0009922.1 mouse_genomes_project 17 21810361 21812931 - MGP_AJ_P0011808 Casp16-ps polymorphic_pseudogene polymorphic_pseudogene MGP_AJ_T0011809.1 MGP_AJ_G0009922.1 mouse_genomes_project 17 21810469 21812853 - MGP_AJ_P0011809 Casp16-ps polymorphic_pseudogene protein_coding MGP_AJ_T0017572.1 MGP_AJ_G0015326.1 mouse_genomes_project 17 36478737 36480746 + Gm20429 processed_transcript retained_intron MGP_AJ_T0017573.1 MGP_AJ_G0015326.1 mouse_genomes_project 17 36480126 36494817 + Gm20429 processed_transcript antisense MGP_AJ_T0047868.1 MGP_AJ_G0023760.1 mouse_genomes_project 17 46030725 46045437 - MGP_AJ_P0047868 Rsph9 protein_coding protein_coding MGP_AJ_T0047872.1 MGP_AJ_G0023760.1 mouse_genomes_project 17 46037961 46052823 - MGP_AJ_P0047872 Rsph9 protein_coding protein_coding MGP_AJ_T0047873.1 MGP_AJ_G0023760.1 mouse_genomes_project 17 46043110 46045402 - Rsph9 protein_coding retained_intron MGP_AJ_T0047601.1 MGP_AJ_G0023643.1 mouse_genomes_project 17 36061343 36069779 - MGP_AJ_P0047601 Trim40 protein_coding protein_coding MGP_AJ_T0047602.1 MGP_AJ_G0023643.1 mouse_genomes_project 17 36061590 36069261 - MGP_AJ_P0047602 Trim40 protein_coding protein_coding MGP_AJ_T0047603.1 MGP_AJ_G0023643.1 mouse_genomes_project 17 36062695 36069857 - Trim40 protein_coding retained_intron MGP_AJ_T0047604.1 MGP_AJ_G0023643.1 mouse_genomes_project 17 36068992 36069846 - Trim40 protein_coding processed_transcript MGP_AJ_T0003725.1 MGP_AJ_G0003353.1 mouse_genomes_project 17 23084534 23084968 - Snhg9 antisense antisense MGP_AJ_T0048314.1 MGP_AJ_G0023906.1 mouse_genomes_project 17 57124738 57132459 - MGP_AJ_P0048314 Gtf2f1 protein_coding protein_coding MGP_AJ_T0017546.1 MGP_AJ_G0015314.1 mouse_genomes_project 17 18638517 18639543 + Vmn1r227 processed_transcript pseudogene MGP_AJ_T0046943.1 MGP_AJ_G0023502.1 mouse_genomes_project 17 32691971 32693982 + MGP_AJ_P0046943 Daxx protein_coding protein_coding MGP_AJ_T0046944.1 MGP_AJ_G0023502.1 mouse_genomes_project 17 32692002 32698110 + MGP_AJ_P0046944 Daxx protein_coding protein_coding MGP_AJ_T0046945.1 MGP_AJ_G0023502.1 mouse_genomes_project 17 32692055 32694071 + MGP_AJ_P0046945 Daxx protein_coding protein_coding MGP_AJ_T0046946.1 MGP_AJ_G0023502.1 mouse_genomes_project 17 32692072 32698036 + MGP_AJ_P0046946 Daxx protein_coding protein_coding MGP_AJ_T0046947.1 MGP_AJ_G0023502.1 mouse_genomes_project 17 32692158 32698103 + MGP_AJ_P0046947 Daxx protein_coding protein_coding MGP_AJ_T0046948.1 MGP_AJ_G0023502.1 mouse_genomes_project 17 32692834 32694456 + Daxx protein_coding retained_intron MGP_AJ_T0046949.1 MGP_AJ_G0023502.1 mouse_genomes_project 17 32692983 32698103 + MGP_AJ_P0046949 Daxx protein_coding protein_coding MGP_AJ_T0046950.1 MGP_AJ_G0023502.1 mouse_genomes_project 17 32695305 32696514 + Daxx protein_coding processed_transcript MGP_AJ_T0046951.1 MGP_AJ_G0023502.1 mouse_genomes_project 17 32696073 32698036 + Daxx protein_coding processed_transcript MGP_AJ_T0003780.1 MGP_AJ_G0003395.1 mouse_genomes_project 17 57162969 57169870 + Gm17168 antisense antisense MGP_AJ_T0013242.1 MGP_AJ_G0011337.1 mouse_genomes_project 17 35374137 35374177 + processed_pseudogene processed_pseudogene MGP_AJ_T0048336.1 MGP_AJ_G0023916.1 mouse_genomes_project 17 57317799 57322498 - MGP_AJ_P0048336 Tnfsf14 protein_coding protein_coding MGP_AJ_T0099656.1 MGP_AJ_G0037622.1 mouse_genomes_project 17 43348477 43348620 + Gm25135 snRNA snRNA MGP_AJ_T0010226.1 MGP_AJ_G0008348.1 mouse_genomes_project 17 91618394 91618539 + miRNA miRNA MGP_AJ_T0048727.1 MGP_AJ_G0024059.1 mouse_genomes_project 17 87713727 87726334 - MGP_AJ_P0048727 Mcfd2 protein_coding protein_coding MGP_AJ_T0048728.1 MGP_AJ_G0024059.1 mouse_genomes_project 17 87713729 87726303 - MGP_AJ_P0048728 Mcfd2 protein_coding protein_coding MGP_AJ_T0048729.1 MGP_AJ_G0024059.1 mouse_genomes_project 17 87714857 87726279 - MGP_AJ_P0048729 Mcfd2 protein_coding protein_coding MGP_AJ_T0048730.1 MGP_AJ_G0024059.1 mouse_genomes_project 17 87715039 87726294 - MGP_AJ_P0048730 Mcfd2 protein_coding protein_coding MGP_AJ_T0048731.1 MGP_AJ_G0024059.1 mouse_genomes_project 17 87715827 87726273 - MGP_AJ_P0048731 Mcfd2 protein_coding protein_coding MGP_AJ_T0048732.1 MGP_AJ_G0024059.1 mouse_genomes_project 17 87716300 87726279 - MGP_AJ_P0048732 Mcfd2 protein_coding protein_coding MGP_AJ_T0048733.1 MGP_AJ_G0024059.1 mouse_genomes_project 17 87718927 87726262 - Mcfd2 protein_coding processed_transcript MGP_AJ_T0046860.1 MGP_AJ_G0023488.1 mouse_genomes_project 17 32298358 32328995 + MGP_AJ_P0046860 Adamts10 protein_coding protein_coding MGP_AJ_T0046861.1 MGP_AJ_G0023488.1 mouse_genomes_project 17 32298358 32328995 + MGP_AJ_P0046861 Adamts10 protein_coding nonsense_mediated_decay MGP_AJ_T0046862.1 MGP_AJ_G0023488.1 mouse_genomes_project 17 32298363 32328994 + MGP_AJ_P0046862 Adamts10 protein_coding nonsense_mediated_decay MGP_AJ_T0046863.1 MGP_AJ_G0023488.1 mouse_genomes_project 17 32298364 32303302 + Adamts10 protein_coding retained_intron MGP_AJ_T0046864.1 MGP_AJ_G0023488.1 mouse_genomes_project 17 32298380 32328995 + MGP_AJ_P0046864 Adamts10 protein_coding nonsense_mediated_decay MGP_AJ_T0046865.1 MGP_AJ_G0023488.1 mouse_genomes_project 17 32302451 32328675 + MGP_AJ_P0046865 Adamts10 protein_coding nonsense_mediated_decay MGP_AJ_T0046866.1 MGP_AJ_G0023488.1 mouse_genomes_project 17 32302451 32328675 + MGP_AJ_P0046866 Adamts10 protein_coding nonsense_mediated_decay MGP_AJ_T0046867.1 MGP_AJ_G0023488.1 mouse_genomes_project 17 32305794 32328994 + MGP_AJ_P0046867 Adamts10 protein_coding nonsense_mediated_decay MGP_AJ_T0046868.1 MGP_AJ_G0023488.1 mouse_genomes_project 17 32305903 32317713 + Adamts10 protein_coding processed_transcript MGP_AJ_T0046869.1 MGP_AJ_G0023488.1 mouse_genomes_project 17 32311520 32328995 + Adamts10 protein_coding retained_intron MGP_AJ_T0046870.1 MGP_AJ_G0023488.1 mouse_genomes_project 17 32311903 32328997 + Adamts10 protein_coding retained_intron MGP_AJ_T0046871.1 MGP_AJ_G0023488.1 mouse_genomes_project 17 32318013 32329009 + Adamts10 protein_coding retained_intron MGP_AJ_T0047797.1 MGP_AJ_G0023746.1 mouse_genomes_project 17 45408809 45422650 + MGP_AJ_P0047797 Aars2 protein_coding protein_coding MGP_AJ_T0048586.1 MGP_AJ_G0023992.1 mouse_genomes_project 17 75812888 75826365 - MGP_AJ_P0048586 Fam98a protein_coding protein_coding MGP_AJ_T0048587.1 MGP_AJ_G0023992.1 mouse_genomes_project 17 75813717 75815259 - Fam98a protein_coding retained_intron MGP_AJ_T0048588.1 MGP_AJ_G0023992.1 mouse_genomes_project 17 75819153 75826368 - Fam98a protein_coding retained_intron MGP_AJ_T0013294.1 MGP_AJ_G0011389.1 mouse_genomes_project 17 81320204 81320536 - processed_pseudogene processed_pseudogene MGP_AJ_T0102400.1 MGP_AJ_G0040142.1 mouse_genomes_project 17 32758079 32762390 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0047740.1 MGP_AJ_G0023725.1 mouse_genomes_project 17 42429631 42483480 - MGP_AJ_P0047740 Opn5 protein_coding protein_coding MGP_AJ_T0006904.1 MGP_AJ_G0005680.1 mouse_genomes_project 17 12655773 12664902 + Gm28873 lincRNA lincRNA MGP_AJ_T0013270.1 MGP_AJ_G0011365.1 mouse_genomes_project 17 53612608 53613091 - processed_pseudogene processed_pseudogene MGP_AJ_T0048627.1 MGP_AJ_G0024012.1 mouse_genomes_project 17 80376830 80410633 - MGP_AJ_P0048627 Hnrnpll protein_coding protein_coding MGP_AJ_T0048628.1 MGP_AJ_G0024012.1 mouse_genomes_project 17 80376830 80410526 - MGP_AJ_P0048628 Hnrnpll protein_coding protein_coding MGP_AJ_T0048629.1 MGP_AJ_G0024012.1 mouse_genomes_project 17 80377180 80410526 - MGP_AJ_P0048629 Hnrnpll protein_coding nonsense_mediated_decay MGP_AJ_T0048630.1 MGP_AJ_G0024012.1 mouse_genomes_project 17 80377684 80382915 - Hnrnpll protein_coding retained_intron MGP_AJ_T0048631.1 MGP_AJ_G0024012.1 mouse_genomes_project 17 80384508 80410493 - Hnrnpll protein_coding retained_intron MGP_AJ_T0048632.1 MGP_AJ_G0024012.1 mouse_genomes_project 17 80393020 80410434 - Hnrnpll protein_coding retained_intron MGP_AJ_T0048633.1 MGP_AJ_G0024012.1 mouse_genomes_project 17 80399209 80410567 - Hnrnpll protein_coding retained_intron MGP_AJ_T0045751.1 MGP_AJ_G0023207.1 mouse_genomes_project 17 20047923 20048715 - MGP_AJ_P0045751 Gm9772 protein_coding protein_coding MGP_AJ_T0017597.1 MGP_AJ_G0015331.1 mouse_genomes_project 17 91383620 91389569 + 4930480K15Rik processed_transcript processed_transcript MGP_AJ_T0003736.1 MGP_AJ_G0003363.1 mouse_genomes_project 17 28149447 28167010 - Tbc1d22bos antisense antisense MGP_AJ_T0003737.1 MGP_AJ_G0003363.1 mouse_genomes_project 17 28158453 28166984 - Tbc1d22bos antisense antisense MGP_AJ_T0046800.1 MGP_AJ_G0023464.1 mouse_genomes_project 17 31273013 31295821 + MGP_AJ_P0046800 Cyp4f17 protein_coding protein_coding MGP_AJ_T0048178.1 MGP_AJ_G0023846.1 mouse_genomes_project 17 53389348 53463839 - MGP_AJ_P0048178 Efhb protein_coding protein_coding MGP_AJ_T0017549.1 MGP_AJ_G0015316.1 mouse_genomes_project 17 22758125 22768082 - D330041H03Rik processed_transcript antisense MGP_AJ_T0017550.1 MGP_AJ_G0015316.1 mouse_genomes_project 17 22763012 22768166 - D330041H03Rik processed_transcript antisense MGP_AJ_T0017551.1 MGP_AJ_G0015316.1 mouse_genomes_project 17 22763028 22768060 - D330041H03Rik processed_transcript antisense MGP_AJ_T0017552.1 MGP_AJ_G0015316.1 mouse_genomes_project 17 22765679 22767285 - D330041H03Rik processed_transcript processed_transcript MGP_AJ_T0017553.1 MGP_AJ_G0015316.1 mouse_genomes_project 17 22765687 22768196 - D330041H03Rik processed_transcript antisense MGP_AJ_T0017554.1 MGP_AJ_G0015316.1 mouse_genomes_project 17 22766079 22768080 - D330041H03Rik processed_transcript retained_intron MGP_AJ_T0017555.1 MGP_AJ_G0015316.1 mouse_genomes_project 17 22766154 22768052 - D330041H03Rik processed_transcript antisense MGP_AJ_T0102433.1 MGP_AJ_G0040175.1 mouse_genomes_project 17 36508400 36509858 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0045720.1 MGP_AJ_G0023189.1 mouse_genomes_project 17 19037445 19038878 + MGP_AJ_P0045720 Gm6811 protein_coding protein_coding MGP_AJ_T0006946.1 MGP_AJ_G0005714.1 mouse_genomes_project 17 33538945 33542078 - Gm20461 lincRNA lincRNA MGP_AJ_T0047985.1 MGP_AJ_G0023795.1 mouse_genomes_project 17 46834367 46836210 + MGP_AJ_P0047985 Tbcc protein_coding protein_coding MGP_AJ_T0048210.1 MGP_AJ_G0023866.1 mouse_genomes_project 17 56068271 56076596 - MGP_AJ_P0048210 Stap2 protein_coding protein_coding MGP_AJ_T0047327.1 MGP_AJ_G0023579.1 mouse_genomes_project 17 34089861 34095124 - MGP_AJ_P0047327 Csnk2b protein_coding protein_coding MGP_AJ_T0047328.1 MGP_AJ_G0023579.1 mouse_genomes_project 17 34089863 34094981 - MGP_AJ_P0047328 Csnk2b protein_coding protein_coding MGP_AJ_T0047329.1 MGP_AJ_G0023579.1 mouse_genomes_project 17 34089863 34093470 - MGP_AJ_P0047329 Csnk2b protein_coding protein_coding MGP_AJ_T0047330.1 MGP_AJ_G0023579.1 mouse_genomes_project 17 34089865 34094868 - MGP_AJ_P0047330 Csnk2b protein_coding protein_coding MGP_AJ_T0047331.1 MGP_AJ_G0023579.1 mouse_genomes_project 17 34089907 34091769 - MGP_AJ_P0047331 Csnk2b protein_coding protein_coding MGP_AJ_T0047332.1 MGP_AJ_G0023579.1 mouse_genomes_project 17 34091391 34092476 - Csnk2b protein_coding retained_intron MGP_AJ_T0047333.1 MGP_AJ_G0023579.1 mouse_genomes_project 17 34091392 34095748 - MGP_AJ_P0047333 Csnk2b protein_coding protein_coding MGP_AJ_T0047334.1 MGP_AJ_G0023579.1 mouse_genomes_project 17 34091691 34094725 - MGP_AJ_P0047334 Csnk2b protein_coding protein_coding MGP_AJ_T0047335.1 MGP_AJ_G0023579.1 mouse_genomes_project 17 34093448 34095693 - MGP_AJ_P0047335 Csnk2b protein_coding protein_coding MGP_AJ_T0047336.1 MGP_AJ_G0023579.1 mouse_genomes_project 17 34094212 34095131 - Csnk2b protein_coding retained_intron MGP_AJ_T0045679.1 MGP_AJ_G0023155.1 mouse_genomes_project 17 15680547 15681519 + MGP_AJ_P0045679 Fpr-rs4 protein_coding protein_coding MGP_AJ_T0047609.1 MGP_AJ_G0023646.1 mouse_genomes_project 17 36127627 36130984 - MGP_AJ_P0047609 Ppp1r11 protein_coding protein_coding MGP_AJ_T0047610.1 MGP_AJ_G0023646.1 mouse_genomes_project 17 36128560 36131012 - MGP_AJ_P0047610 Ppp1r11 protein_coding protein_coding MGP_AJ_T0047611.1 MGP_AJ_G0023646.1 mouse_genomes_project 17 36128625 36130609 - MGP_AJ_P0047611 Ppp1r11 protein_coding protein_coding MGP_AJ_T0045718.1 MGP_AJ_G0023187.1 mouse_genomes_project 17 18907171 18908131 - MGP_AJ_P0045718 Vmn1r233 protein_coding protein_coding MGP_AJ_T0047726.1 MGP_AJ_G0023716.1 mouse_genomes_project 17 40561279 40566285 + MGP_AJ_P0047726 protein_coding protein_coding MGP_AJ_T0048475.1 MGP_AJ_G0023959.1 mouse_genomes_project 17 71111845 71112337 + MGP_AJ_P0048475 Gm16519 protein_coding protein_coding MGP_AJ_T0045753.1 MGP_AJ_G0023209.1 mouse_genomes_project 17 20452511 20489247 - MGP_AJ_P0045753 Zfp944 protein_coding unknown_likely_coding MGP_AJ_T0045754.1 MGP_AJ_G0023209.1 mouse_genomes_project 17 20452519 20486342 - MGP_AJ_P0045754 Zfp944 protein_coding protein_coding MGP_AJ_T0003763.1 MGP_AJ_G0003383.1 mouse_genomes_project 17 36103247 36112920 + 1700031A10Rik antisense antisense MGP_AJ_T0045396.1 MGP_AJ_G0023075.1 mouse_genomes_project 17 2491160 2492605 - MGP_AJ_P0045396 Ldhal6b protein_coding protein_coding MGP_AJ_T0047562.1 MGP_AJ_G0023628.1 mouse_genomes_project 17 35396441 35397633 - MGP_AJ_P0047562 protein_coding protein_coding MGP_AJ_T0003756.1 MGP_AJ_G0003376.1 mouse_genomes_project 17 34730317 34739505 + Gm20483 antisense antisense MGP_AJ_T0048297.1 MGP_AJ_G0023894.1 mouse_genomes_project 17 56833064 56839551 + MGP_AJ_P0048297 Ndufa11 protein_coding protein_coding MGP_AJ_T0046252.1 MGP_AJ_G0023339.1 mouse_genomes_project 17 24250124 24252800 - MGP_AJ_P0046252 Wfikkn1 protein_coding protein_coding MGP_AJ_T0046253.1 MGP_AJ_G0023339.1 mouse_genomes_project 17 24251298 24252731 - MGP_AJ_P0046253 Wfikkn1 protein_coding protein_coding MGP_AJ_T0010209.1 MGP_AJ_G0008331.1 mouse_genomes_project 17 35050848 35050933 - Mir877 miRNA miRNA MGP_AJ_T0045624.1 MGP_AJ_G0023140.1 mouse_genomes_project 17 13066300 13085948 - MGP_AJ_P0045624 Psmb1 protein_coding protein_coding MGP_AJ_T0047738.1 MGP_AJ_G0023723.1 mouse_genomes_project 17 40788138 40817786 + MGP_AJ_P0047738 Mut protein_coding protein_coding MGP_AJ_T0102416.1 MGP_AJ_G0040158.1 mouse_genomes_project 17 35385322 35385428 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0006911.1 MGP_AJ_G0005686.1 mouse_genomes_project 17 19526922 19534602 - 9330136K24Rik lincRNA lincRNA MGP_AJ_T0099644.1 MGP_AJ_G0037610.1 mouse_genomes_project 17 22716769 22716876 - Gm25618 snRNA snRNA MGP_AJ_T0013214.1 MGP_AJ_G0011309.1 mouse_genomes_project 17 10317334 10318358 - processed_pseudogene processed_pseudogene MGP_AJ_T0046843.1 MGP_AJ_G0023478.1 mouse_genomes_project 17 31856464 31860373 - MGP_AJ_P0046843 4921501E09Rik protein_coding protein_coding MGP_AJ_T0045931.1 MGP_AJ_G0023265.1 mouse_genomes_project 17 22864647 22885029 - MGP_AJ_P0045931 Traf7 protein_coding protein_coding MGP_AJ_T0045932.1 MGP_AJ_G0023265.1 mouse_genomes_project 17 22864933 22868571 - Traf7 protein_coding retained_intron MGP_AJ_T0045933.1 MGP_AJ_G0023265.1 mouse_genomes_project 17 22864933 22875262 - MGP_AJ_P0045933 Traf7 protein_coding protein_coding MGP_AJ_T0045934.1 MGP_AJ_G0023265.1 mouse_genomes_project 17 22864933 22884941 - MGP_AJ_P0045934 Traf7 protein_coding nonsense_mediated_decay MGP_AJ_T0045935.1 MGP_AJ_G0023265.1 mouse_genomes_project 17 22864933 22884981 - MGP_AJ_P0045935 Traf7 protein_coding nonsense_mediated_decay MGP_AJ_T0045936.1 MGP_AJ_G0023265.1 mouse_genomes_project 17 22864933 22875262 - MGP_AJ_P0045936 Traf7 protein_coding protein_coding MGP_AJ_T0045937.1 MGP_AJ_G0023265.1 mouse_genomes_project 17 22864933 22884937 - MGP_AJ_P0045937 Traf7 protein_coding protein_coding MGP_AJ_T0045938.1 MGP_AJ_G0023265.1 mouse_genomes_project 17 22864937 22867116 - Traf7 protein_coding retained_intron MGP_AJ_T0045939.1 MGP_AJ_G0023265.1 mouse_genomes_project 17 22866145 22866595 - Traf7 protein_coding retained_intron MGP_AJ_T0045940.1 MGP_AJ_G0023265.1 mouse_genomes_project 17 22866296 22868455 - Traf7 protein_coding retained_intron MGP_AJ_T0045941.1 MGP_AJ_G0023265.1 mouse_genomes_project 17 22866568 22868650 - Traf7 protein_coding retained_intron MGP_AJ_T0045942.1 MGP_AJ_G0023265.1 mouse_genomes_project 17 22867679 22869385 - MGP_AJ_P0045942 Traf7 protein_coding nonsense_mediated_decay MGP_AJ_T0045943.1 MGP_AJ_G0023265.1 mouse_genomes_project 17 22867770 22870785 - MGP_AJ_P0045943 Traf7 protein_coding nonsense_mediated_decay MGP_AJ_T0045944.1 MGP_AJ_G0023265.1 mouse_genomes_project 17 22868329 22884954 - MGP_AJ_P0045944 Traf7 protein_coding protein_coding MGP_AJ_T0045945.1 MGP_AJ_G0023265.1 mouse_genomes_project 17 22868677 22869284 - Traf7 protein_coding retained_intron MGP_AJ_T0045946.1 MGP_AJ_G0023265.1 mouse_genomes_project 17 22869104 22884580 - MGP_AJ_P0045946 Traf7 protein_coding protein_coding MGP_AJ_T0045947.1 MGP_AJ_G0023265.1 mouse_genomes_project 17 22869287 22884937 - MGP_AJ_P0045947 Traf7 protein_coding nonsense_mediated_decay MGP_AJ_T0045948.1 MGP_AJ_G0023265.1 mouse_genomes_project 17 22869299 22884924 - MGP_AJ_P0045948 Traf7 protein_coding nonsense_mediated_decay MGP_AJ_T0045949.1 MGP_AJ_G0023265.1 mouse_genomes_project 17 22869306 22885002 - MGP_AJ_P0045949 Traf7 protein_coding nonsense_mediated_decay MGP_AJ_T0045950.1 MGP_AJ_G0023265.1 mouse_genomes_project 17 22869382 22884639 - MGP_AJ_P0045950 Traf7 protein_coding protein_coding MGP_AJ_T0045951.1 MGP_AJ_G0023265.1 mouse_genomes_project 17 22869966 22884937 - MGP_AJ_P0045951 Traf7 protein_coding nonsense_mediated_decay MGP_AJ_T0045952.1 MGP_AJ_G0023265.1 mouse_genomes_project 17 22870765 22884912 - MGP_AJ_P0045952 Traf7 protein_coding nonsense_mediated_decay MGP_AJ_T0045953.1 MGP_AJ_G0023265.1 mouse_genomes_project 17 22872344 22884941 - Traf7 protein_coding retained_intron MGP_AJ_T0045954.1 MGP_AJ_G0023265.1 mouse_genomes_project 17 22872609 22884959 - Traf7 protein_coding processed_transcript MGP_AJ_T0045955.1 MGP_AJ_G0023265.1 mouse_genomes_project 17 22874425 22884942 - Traf7 protein_coding processed_transcript MGP_AJ_T0045956.1 MGP_AJ_G0023265.1 mouse_genomes_project 17 22874626 22884875 - Traf7 protein_coding retained_intron MGP_AJ_T0045803.1 MGP_AJ_G0023223.1 mouse_genomes_project 17 21941076 21943077 - MGP_AJ_P0045803 Tnfrsf12a protein_coding protein_coding MGP_AJ_T0045804.1 MGP_AJ_G0023223.1 mouse_genomes_project 17 21941076 21943077 - MGP_AJ_P0045804 Tnfrsf12a protein_coding protein_coding MGP_AJ_T0045690.1 MGP_AJ_G0023165.1 mouse_genomes_project 17 17453730 17481590 + MGP_AJ_P0045690 Vmn2r101 protein_coding protein_coding MGP_AJ_T0045691.1 MGP_AJ_G0023166.1 mouse_genomes_project 17 17532081 17566712 + MGP_AJ_P0045691 Vmn2r102 protein_coding protein_coding MGP_AJ_T0006941.1 MGP_AJ_G0005709.1 mouse_genomes_project 17 32561366 32563842 - 4931413I07Rik lincRNA lincRNA MGP_AJ_T0048362.1 MGP_AJ_G0023928.1 mouse_genomes_project 17 63176912 63616338 - MGP_AJ_P0048362 Fbxl17 protein_coding protein_coding MGP_AJ_T0048363.1 MGP_AJ_G0023928.1 mouse_genomes_project 17 63178513 63572542 - Fbxl17 protein_coding processed_transcript MGP_AJ_T0048364.1 MGP_AJ_G0023928.1 mouse_genomes_project 17 63179669 63568089 - Fbxl17 protein_coding processed_transcript MGP_AJ_T0048365.1 MGP_AJ_G0023928.1 mouse_genomes_project 17 63499316 63597672 - Fbxl17 protein_coding processed_transcript MGP_AJ_T0048377.1 MGP_AJ_G0023934.1 mouse_genomes_project 17 65373299 65637628 - MGP_AJ_P0048377 Tmem232 protein_coding protein_coding MGP_AJ_T0048378.1 MGP_AJ_G0023934.1 mouse_genomes_project 17 65373301 65637622 - MGP_AJ_P0048378 Tmem232 protein_coding protein_coding MGP_AJ_T0048636.1 MGP_AJ_G0024014.1 mouse_genomes_project 17 80550832 80558056 - MGP_AJ_P0048636 Srsf7 protein_coding protein_coding MGP_AJ_T0046247.1 MGP_AJ_G0023338.1 mouse_genomes_project 17 24248049 24249746 + MGP_AJ_P0046247 Mettl26 protein_coding nonsense_mediated_decay MGP_AJ_T0046248.1 MGP_AJ_G0023338.1 mouse_genomes_project 17 24248085 24249755 + MGP_AJ_P0046248 Mettl26 protein_coding protein_coding MGP_AJ_T0046249.1 MGP_AJ_G0023338.1 mouse_genomes_project 17 24248086 24249755 + MGP_AJ_P0046249 Mettl26 protein_coding protein_coding MGP_AJ_T0046250.1 MGP_AJ_G0023338.1 mouse_genomes_project 17 24248115 24258502 + MGP_AJ_P0046250 Mettl26 protein_coding protein_coding MGP_AJ_T0046251.1 MGP_AJ_G0023338.1 mouse_genomes_project 17 24248115 24249583 + MGP_AJ_P0046251 Mettl26 protein_coding protein_coding MGP_AJ_T0046688.1 MGP_AJ_G0023439.1 mouse_genomes_project 17 29855157 29859545 - MGP_AJ_P0046688 Tff3 protein_coding protein_coding MGP_AJ_T0048316.1 MGP_AJ_G0023908.1 mouse_genomes_project 17 57153988 57162849 - MGP_AJ_P0048316 Slc25a41 protein_coding protein_coding MGP_AJ_T0048317.1 MGP_AJ_G0023908.1 mouse_genomes_project 17 57154140 57162842 - MGP_AJ_P0048317 Slc25a41 protein_coding protein_coding MGP_AJ_T0047171.1 MGP_AJ_G0023548.1 mouse_genomes_project 17 33545246 33553190 + MGP_AJ_P0047171 Atf6b protein_coding protein_coding MGP_AJ_T0047172.1 MGP_AJ_G0023548.1 mouse_genomes_project 17 33545301 33547250 + MGP_AJ_P0047172 Atf6b protein_coding nonsense_mediated_decay MGP_AJ_T0047173.1 MGP_AJ_G0023548.1 mouse_genomes_project 17 33545301 33547305 + MGP_AJ_P0047173 Atf6b protein_coding nonsense_mediated_decay MGP_AJ_T0047174.1 MGP_AJ_G0023548.1 mouse_genomes_project 17 33545311 33552995 + MGP_AJ_P0047174 Atf6b protein_coding protein_coding MGP_AJ_T0047175.1 MGP_AJ_G0023548.1 mouse_genomes_project 17 33549737 33550218 + Atf6b protein_coding retained_intron MGP_AJ_T0010222.1 MGP_AJ_G0008344.1 mouse_genomes_project 17 67173677 67173766 - Mir5709 miRNA miRNA MGP_AJ_T0048409.1 MGP_AJ_G0023943.1 mouse_genomes_project 17 66241086 66250065 + MGP_AJ_P0048409 Wash1 protein_coding protein_coding MGP_AJ_T0048410.1 MGP_AJ_G0023943.1 mouse_genomes_project 17 66241185 66250065 + MGP_AJ_P0048410 Wash1 protein_coding protein_coding MGP_AJ_T0045625.1 MGP_AJ_G0023141.1 mouse_genomes_project 17 13087559 13105523 + MGP_AJ_P0045625 Tbp protein_coding protein_coding MGP_AJ_T0045626.1 MGP_AJ_G0023141.1 mouse_genomes_project 17 13087559 13117180 + MGP_AJ_P0045626 Tbp protein_coding protein_coding MGP_AJ_T0045627.1 MGP_AJ_G0023141.1 mouse_genomes_project 17 13087559 13092278 + MGP_AJ_P0045627 Tbp protein_coding protein_coding MGP_AJ_T0045628.1 MGP_AJ_G0023141.1 mouse_genomes_project 17 13087572 13095127 + MGP_AJ_P0045628 Tbp protein_coding protein_coding MGP_AJ_T0045629.1 MGP_AJ_G0023141.1 mouse_genomes_project 17 13087581 13105523 + MGP_AJ_P0045629 Tbp protein_coding protein_coding MGP_AJ_T0045630.1 MGP_AJ_G0023141.1 mouse_genomes_project 17 13087583 13095032 + MGP_AJ_P0045630 Tbp protein_coding protein_coding MGP_AJ_T0045631.1 MGP_AJ_G0023141.1 mouse_genomes_project 17 13087593 13102053 + MGP_AJ_P0045631 Tbp protein_coding protein_coding MGP_AJ_T0045632.1 MGP_AJ_G0023141.1 mouse_genomes_project 17 13087599 13092120 + MGP_AJ_P0045632 Tbp protein_coding protein_coding MGP_AJ_T0045633.1 MGP_AJ_G0023141.1 mouse_genomes_project 17 13087631 13105523 + MGP_AJ_P0045633 Tbp protein_coding protein_coding MGP_AJ_T0045634.1 MGP_AJ_G0023141.1 mouse_genomes_project 17 13092255 13104964 + MGP_AJ_P0045634 Tbp protein_coding protein_coding MGP_AJ_T0045635.1 MGP_AJ_G0023141.1 mouse_genomes_project 17 13103163 13105031 + Tbp protein_coding retained_intron MGP_AJ_T0013282.1 MGP_AJ_G0011377.1 mouse_genomes_project 17 61464998 61466040 + processed_pseudogene processed_pseudogene MGP_AJ_T0010174.1 MGP_AJ_G0008296.1 mouse_genomes_project 17 22357378 22357459 + Gm27700 miRNA miRNA MGP_AJ_T0013281.1 MGP_AJ_G0011376.1 mouse_genomes_project 17 56085850 56086112 - processed_pseudogene processed_pseudogene MGP_AJ_T0046407.1 MGP_AJ_G0023376.1 mouse_genomes_project 17 25633773 25649398 - MGP_AJ_P0046407 Lemd2 protein_coding protein_coding MGP_AJ_T0046959.1 MGP_AJ_G0023505.1 mouse_genomes_project 17 32712070 32713024 + Rgl2 protein_coding retained_intron MGP_AJ_T0046960.1 MGP_AJ_G0023505.1 mouse_genomes_project 17 32712109 32720179 + MGP_AJ_P0046960 Rgl2 protein_coding protein_coding MGP_AJ_T0046961.1 MGP_AJ_G0023505.1 mouse_genomes_project 17 32712431 32714745 + Rgl2 protein_coding processed_transcript MGP_AJ_T0046962.1 MGP_AJ_G0023505.1 mouse_genomes_project 17 32712501 32714911 + Rgl2 protein_coding retained_intron MGP_AJ_T0046963.1 MGP_AJ_G0023505.1 mouse_genomes_project 17 32713417 32714568 + Rgl2 protein_coding retained_intron MGP_AJ_T0046964.1 MGP_AJ_G0023505.1 mouse_genomes_project 17 32713426 32715051 + Rgl2 protein_coding processed_transcript MGP_AJ_T0046965.1 MGP_AJ_G0023505.1 mouse_genomes_project 17 32713442 32714485 + Rgl2 protein_coding retained_intron MGP_AJ_T0046966.1 MGP_AJ_G0023505.1 mouse_genomes_project 17 32713744 32715041 + Rgl2 protein_coding retained_intron MGP_AJ_T0046967.1 MGP_AJ_G0023505.1 mouse_genomes_project 17 32714590 32715762 + Rgl2 protein_coding retained_intron MGP_AJ_T0046968.1 MGP_AJ_G0023505.1 mouse_genomes_project 17 32714669 32715685 + Rgl2 protein_coding retained_intron MGP_AJ_T0046969.1 MGP_AJ_G0023505.1 mouse_genomes_project 17 32716469 32719716 + MGP_AJ_P0046969 Rgl2 protein_coding protein_coding MGP_AJ_T0046970.1 MGP_AJ_G0023505.1 mouse_genomes_project 17 32717866 32719382 + Rgl2 protein_coding retained_intron MGP_AJ_T0047672.1 MGP_AJ_G0023671.1 mouse_genomes_project 17 36714592 36715537 + MGP_AJ_P0047672 Olfr109 protein_coding protein_coding MGP_AJ_T0047555.1 MGP_AJ_G0023624.1 mouse_genomes_project 17 35173056 35180098 + MGP_AJ_P0047555 protein_coding protein_coding MGP_AJ_T0047936.1 MGP_AJ_G0023774.1 mouse_genomes_project 17 46359814 46360336 - MGP_AJ_P0047936 Gm5093 protein_coding protein_coding MGP_AJ_T0011423.1 MGP_AJ_G0009545.1 mouse_genomes_project 17 31757737 31758012 - Gm25667 misc_RNA misc_RNA MGP_AJ_T0006951.1 MGP_AJ_G0005719.1 mouse_genomes_project 17 35086123 35088114 + Gm20508 lincRNA lincRNA MGP_AJ_T0048539.1 MGP_AJ_G0023978.1 mouse_genomes_project 17 73740248 73960315 - MGP_AJ_P0048539 Galnt14 protein_coding protein_coding MGP_AJ_T0048540.1 MGP_AJ_G0023978.1 mouse_genomes_project 17 73754548 73960279 - MGP_AJ_P0048540 Galnt14 protein_coding protein_coding MGP_AJ_T0048541.1 MGP_AJ_G0023978.1 mouse_genomes_project 17 73821170 73960317 - Galnt14 protein_coding retained_intron MGP_AJ_T0006999.1 MGP_AJ_G0005752.1 mouse_genomes_project 17 95276724 95366264 - lincRNA lincRNA MGP_AJ_T0007000.1 MGP_AJ_G0005752.1 mouse_genomes_project 17 95278030 95281673 - lincRNA lincRNA MGP_AJ_T0006917.1 MGP_AJ_G0005690.1 mouse_genomes_project 17 22053308 22056996 + D930048G16Rik lincRNA lincRNA MGP_AJ_T0047215.1 MGP_AJ_G0023555.1 mouse_genomes_project 17 33826581 33829232 - MGP_AJ_P0047215 Cfb protein_coding protein_coding MGP_AJ_T0047216.1 MGP_AJ_G0023555.1 mouse_genomes_project 17 33826591 33832721 - MGP_AJ_P0047216 Cfb protein_coding protein_coding MGP_AJ_T0047217.1 MGP_AJ_G0023555.1 mouse_genomes_project 17 33826598 33828349 - MGP_AJ_P0047217 Cfb protein_coding protein_coding MGP_AJ_T0047218.1 MGP_AJ_G0023555.1 mouse_genomes_project 17 33826619 33829517 - MGP_AJ_P0047218 Cfb protein_coding protein_coding MGP_AJ_T0047221.1 MGP_AJ_G0023555.1 mouse_genomes_project 17 33826634 33832313 - MGP_AJ_P0047221 Cfb protein_coding protein_coding MGP_AJ_T0047222.1 MGP_AJ_G0023555.1 mouse_genomes_project 17 33826781 33829248 - MGP_AJ_P0047222 Cfb protein_coding nonsense_mediated_decay MGP_AJ_T0006907.1 MGP_AJ_G0005683.1 mouse_genomes_project 17 14558662 14573403 + lincRNA lincRNA MGP_AJ_T0006908.1 MGP_AJ_G0005683.1 mouse_genomes_project 17 14572155 14573016 + lincRNA lincRNA MGP_AJ_T0000992.1 MGP_AJ_G0000923.1 mouse_genomes_project 17 51884868 51889842 + TEC TEC MGP_AJ_T0003739.1 MGP_AJ_G0003365.1 mouse_genomes_project 17 29883253 29892890 + Gm15318 antisense antisense MGP_AJ_T0003740.1 MGP_AJ_G0003365.1 mouse_genomes_project 17 29883253 29892055 + Gm15318 antisense antisense MGP_AJ_T0003741.1 MGP_AJ_G0003365.1 mouse_genomes_project 17 29883253 29893619 + Gm15318 antisense antisense MGP_AJ_T0048602.1 MGP_AJ_G0024001.1 mouse_genomes_project 17 79220628 79243790 - MGP_AJ_P0048602 Sult6b1 protein_coding protein_coding MGP_AJ_T0048603.1 MGP_AJ_G0024001.1 mouse_genomes_project 17 79221579 79231973 - Sult6b1 protein_coding processed_transcript MGP_AJ_T0048604.1 MGP_AJ_G0024001.1 mouse_genomes_project 17 79221748 79243697 - MGP_AJ_P0048604 Sult6b1 protein_coding nonsense_mediated_decay MGP_AJ_T0048605.1 MGP_AJ_G0024001.1 mouse_genomes_project 17 79221748 79243697 - MGP_AJ_P0048605 Sult6b1 protein_coding protein_coding MGP_AJ_T0048237.1 MGP_AJ_G0023876.1 mouse_genomes_project 17 56265712 56273807 - MGP_AJ_P0048237 Mydgf protein_coding protein_coding MGP_AJ_T0048238.1 MGP_AJ_G0023876.1 mouse_genomes_project 17 56268066 56273736 - Mydgf protein_coding retained_intron MGP_AJ_T0048239.1 MGP_AJ_G0023876.1 mouse_genomes_project 17 56269272 56273551 - Mydgf protein_coding processed_transcript MGP_AJ_T0048155.1 MGP_AJ_G0023840.1 mouse_genomes_project 17 49994653 50195632 - MGP_AJ_P0048155 Rftn1 protein_coding protein_coding MGP_AJ_T0048156.1 MGP_AJ_G0023840.1 mouse_genomes_project 17 50039678 50195809 - Rftn1 protein_coding retained_intron MGP_AJ_T0098615.1 MGP_AJ_G0036599.1 mouse_genomes_project 17 3234008 3234130 + n-R5s26 rRNA rRNA MGP_AJ_T0011438.1 MGP_AJ_G0009560.1 mouse_genomes_project 17 86022875 86022949 + Gm27610 misc_RNA misc_RNA MGP_AJ_T0047722.1 MGP_AJ_G0023712.1 mouse_genomes_project 17 40396738 40406168 + MGP_AJ_P0047722 Esp8 protein_coding protein_coding MGP_AJ_T0017562.1 MGP_AJ_G0015323.1 mouse_genomes_project 17 32818156 32823700 - Gm20427 processed_transcript retained_intron MGP_AJ_T0047297.1 MGP_AJ_G0023569.1 mouse_genomes_project 17 34023990 34032524 + MGP_AJ_P0047297 Clic1 protein_coding protein_coding MGP_AJ_T0047298.1 MGP_AJ_G0023569.1 mouse_genomes_project 17 34026347 34029589 + Clic1 protein_coding retained_intron MGP_AJ_T0046205.1 MGP_AJ_G0023331.1 mouse_genomes_project 17 24201771 24204743 + MGP_AJ_P0046205 Jmjd8 protein_coding protein_coding MGP_AJ_T0046206.1 MGP_AJ_G0023331.1 mouse_genomes_project 17 24201945 24204745 + MGP_AJ_P0046206 Jmjd8 protein_coding protein_coding MGP_AJ_T0046207.1 MGP_AJ_G0023331.1 mouse_genomes_project 17 24201966 24203053 + Jmjd8 protein_coding retained_intron MGP_AJ_T0046208.1 MGP_AJ_G0023331.1 mouse_genomes_project 17 24201973 24203528 + MGP_AJ_P0046208 Jmjd8 protein_coding nonsense_mediated_decay MGP_AJ_T0046209.1 MGP_AJ_G0023331.1 mouse_genomes_project 17 24202022 24203536 + MGP_AJ_P0046209 Jmjd8 protein_coding protein_coding MGP_AJ_T0046210.1 MGP_AJ_G0023331.1 mouse_genomes_project 17 24202023 24203264 + Jmjd8 protein_coding retained_intron MGP_AJ_T0046211.1 MGP_AJ_G0023331.1 mouse_genomes_project 17 24202199 24203429 + Jmjd8 protein_coding retained_intron MGP_AJ_T0046212.1 MGP_AJ_G0023331.1 mouse_genomes_project 17 24202741 24203624 + Jmjd8 protein_coding retained_intron MGP_AJ_T0099649.1 MGP_AJ_G0037615.1 mouse_genomes_project 17 31595829 31595993 - Gm23294 snRNA snRNA MGP_AJ_T0048445.1 MGP_AJ_G0023955.1 mouse_genomes_project 17 69549533 69556558 + MGP_AJ_P0048445 Zbtb14 protein_coding protein_coding MGP_AJ_T0046351.1 MGP_AJ_G0023361.1 mouse_genomes_project 17 24935266 24936267 + MGP_AJ_P0046351 Gm8225 protein_coding protein_coding MGP_AJ_T0046071.1 MGP_AJ_G0023296.1 mouse_genomes_project 17 23426634 23449642 - MGP_AJ_P0046071 Tmem204 protein_coding protein_coding MGP_AJ_T0046072.1 MGP_AJ_G0023296.1 mouse_genomes_project 17 23426836 23446687 - MGP_AJ_P0046072 Tmem204 protein_coding protein_coding MGP_AJ_T0045700.1 MGP_AJ_G0023175.1 mouse_genomes_project 17 18357656 18376534 - MGP_AJ_P0045700 Vmn2r108 protein_coding protein_coding MGP_AJ_T0098622.1 MGP_AJ_G0036606.1 mouse_genomes_project 17 71722420 71722528 - Gm23115 rRNA rRNA MGP_AJ_T0046417.1 MGP_AJ_G0023380.1 mouse_genomes_project 17 26025449 26027607 - MGP_AJ_P0046417 AI413582 protein_coding protein_coding MGP_AJ_T0046418.1 MGP_AJ_G0023380.1 mouse_genomes_project 17 26025645 26027583 - MGP_AJ_P0046418 AI413582 protein_coding nonsense_mediated_decay MGP_AJ_T0046419.1 MGP_AJ_G0023380.1 mouse_genomes_project 17 26025647 26027624 - AI413582 protein_coding retained_intron MGP_AJ_T0046420.1 MGP_AJ_G0023380.1 mouse_genomes_project 17 26026556 26027542 - AI413582 protein_coding processed_transcript MGP_AJ_T0048486.1 MGP_AJ_G0023962.1 mouse_genomes_project 17 71199394 71325229 + MGP_AJ_P0048486 Myom1 protein_coding protein_coding MGP_AJ_T0048487.1 MGP_AJ_G0023962.1 mouse_genomes_project 17 71199441 71325230 + MGP_AJ_P0048487 Myom1 protein_coding protein_coding MGP_AJ_T0048488.1 MGP_AJ_G0023962.1 mouse_genomes_project 17 71199441 71325230 + MGP_AJ_P0048488 Myom1 protein_coding protein_coding MGP_AJ_T0099661.1 MGP_AJ_G0037627.1 mouse_genomes_project 17 50937168 50937285 - Gm25177 snRNA snRNA MGP_AJ_T0048717.1 MGP_AJ_G0024053.1 mouse_genomes_project 17 87360283 87365303 + MGP_AJ_P0048717 Tmem247 protein_coding protein_coding MGP_AJ_T0048718.1 MGP_AJ_G0024053.1 mouse_genomes_project 17 87361344 87365310 + MGP_AJ_P0048718 Tmem247 protein_coding protein_coding MGP_AJ_T0047682.1 MGP_AJ_G0023678.1 mouse_genomes_project 17 36851107 36872013 - MGP_AJ_P0047682 Olfr126 protein_coding protein_coding MGP_AJ_T0102368.1 MGP_AJ_G0040110.1 mouse_genomes_project 17 92430 93711 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0047693.1 MGP_AJ_G0023689.1 mouse_genomes_project 17 37167199 37168239 + MGP_AJ_P0047693 Olfr128 protein_coding protein_coding MGP_AJ_T0010183.1 MGP_AJ_G0008305.1 mouse_genomes_project 17 25355788 25355846 + Gm27740 miRNA miRNA MGP_AJ_T0017547.1 MGP_AJ_G0015315.1 mouse_genomes_project 17 22564254 22576960 + BC028777 processed_transcript processed_transcript MGP_AJ_T0017548.1 MGP_AJ_G0015315.1 mouse_genomes_project 17 22567899 22577145 + BC028777 processed_transcript processed_transcript MGP_AJ_T0047414.1 MGP_AJ_G0023599.1 mouse_genomes_project 17 34624470 34629491 + MGP_AJ_P0047414 Cdsn protein_coding protein_coding MGP_AJ_T0013243.1 MGP_AJ_G0011338.1 mouse_genomes_project 17 35374550 35375221 + processed_pseudogene processed_pseudogene MGP_AJ_T0047736.1 MGP_AJ_G0023722.1 mouse_genomes_project 17 40775752 40788501 - MGP_AJ_P0047736 Cenpq protein_coding protein_coding MGP_AJ_T0047737.1 MGP_AJ_G0023722.1 mouse_genomes_project 17 40778510 40780658 - Cenpq protein_coding processed_transcript MGP_AJ_T0006955.1 MGP_AJ_G0005723.1 mouse_genomes_project 17 45333888 45342398 + B230354K17Rik lincRNA lincRNA MGP_AJ_T0046597.1 MGP_AJ_G0023414.1 mouse_genomes_project 17 27546699 27556256 + protein_coding retained_intron MGP_AJ_T0046598.1 MGP_AJ_G0023414.1 mouse_genomes_project 17 27550384 27554142 + protein_coding retained_intron MGP_AJ_T0013288.1 MGP_AJ_G0011383.1 mouse_genomes_project 17 73435353 73436783 - processed_pseudogene processed_pseudogene MGP_AJ_T0013285.1 MGP_AJ_G0011380.1 mouse_genomes_project 17 68545158 68545689 - processed_pseudogene processed_pseudogene MGP_AJ_T0048176.1 MGP_AJ_G0023845.1 mouse_genomes_project 17 52617236 52998316 + MGP_AJ_P0048176 Kcnh8 protein_coding protein_coding MGP_AJ_T0048177.1 MGP_AJ_G0023845.1 mouse_genomes_project 17 52968414 52997501 + Kcnh8 protein_coding retained_intron MGP_AJ_T0013212.1 MGP_AJ_G0011307.1 mouse_genomes_project 17 9050209 9050503 - processed_pseudogene processed_pseudogene MGP_AJ_T0006968.1 MGP_AJ_G0005730.1 mouse_genomes_project 17 52171333 52185002 + Gm19585 lincRNA lincRNA MGP_AJ_T0006969.1 MGP_AJ_G0005730.1 mouse_genomes_project 17 52182120 52184797 + Gm19585 lincRNA lincRNA MGP_AJ_T0046016.1 MGP_AJ_G0023286.1 mouse_genomes_project 17 23240949 23244189 + MGP_AJ_P0046016 Igfals protein_coding protein_coding MGP_AJ_T0048354.1 MGP_AJ_G0023925.1 mouse_genomes_project 17 58964277 58969833 - Pdzph1 protein_coding retained_intron MGP_AJ_T0048355.1 MGP_AJ_G0023925.1 mouse_genomes_project 17 58964277 59078531 - MGP_AJ_P0048355 Pdzph1 protein_coding protein_coding MGP_AJ_T0048356.1 MGP_AJ_G0023925.1 mouse_genomes_project 17 58964439 58979195 - MGP_AJ_P0048356 Pdzph1 protein_coding protein_coding MGP_AJ_T0046295.1 MGP_AJ_G0023348.1 mouse_genomes_project 17 24479059 24482826 - MGP_AJ_P0046295 Nme4 protein_coding protein_coding MGP_AJ_T0046296.1 MGP_AJ_G0023348.1 mouse_genomes_project 17 24480732 24482791 - Nme4 protein_coding retained_intron MGP_AJ_T0045445.1 MGP_AJ_G0023093.1 mouse_genomes_project 17 4814447 4886973 + MGP_AJ_P0045445 Tcp10c protein_coding protein_coding MGP_AJ_T0045446.1 MGP_AJ_G0023093.1 mouse_genomes_project 17 4814468 4886501 + MGP_AJ_P0045446 Tcp10c protein_coding protein_coding MGP_AJ_T0045447.1 MGP_AJ_G0023093.1 mouse_genomes_project 17 4814487 4886197 + MGP_AJ_P0045447 Tcp10c protein_coding protein_coding MGP_AJ_T0045448.1 MGP_AJ_G0023093.1 mouse_genomes_project 17 4814490 4815826 + MGP_AJ_P0045448 Tcp10c protein_coding protein_coding MGP_AJ_T0045449.1 MGP_AJ_G0023093.1 mouse_genomes_project 17 4814512 4886012 + MGP_AJ_P0045449 Tcp10c protein_coding protein_coding MGP_AJ_T0045450.1 MGP_AJ_G0023093.1 mouse_genomes_project 17 4814535 4886511 + MGP_AJ_P0045450 Tcp10c protein_coding protein_coding MGP_AJ_T0045451.1 MGP_AJ_G0023093.1 mouse_genomes_project 17 4814668 4839574 + MGP_AJ_P0045451 Tcp10c protein_coding protein_coding MGP_AJ_T0045598.1 MGP_AJ_G0023132.1 mouse_genomes_project 17 12464450 12580934 - MGP_AJ_P0045598 Wdr27 protein_coding protein_coding MGP_AJ_T0046799.1 MGP_AJ_G0023463.1 mouse_genomes_project 17 31235048 31259013 + MGP_AJ_P0046799 Cyp4f39 protein_coding protein_coding MGP_AJ_T0100922.1 MGP_AJ_G0038888.1 mouse_genomes_project 17 33926012 33926075 - Gm25744 snoRNA snoRNA MGP_AJ_T0046854.1 MGP_AJ_G0023486.1 mouse_genomes_project 17 32156590 32183969 - Zfp101 protein_coding processed_transcript MGP_AJ_T0046855.1 MGP_AJ_G0023486.1 mouse_genomes_project 17 32169844 32184232 - MGP_AJ_P0046855 Zfp101 protein_coding protein_coding MGP_AJ_T0046856.1 MGP_AJ_G0023486.1 mouse_genomes_project 17 32171944 32183948 - MGP_AJ_P0046856 Zfp101 protein_coding protein_coding MGP_AJ_T0046857.1 MGP_AJ_G0023486.1 mouse_genomes_project 17 32172654 32184214 - MGP_AJ_P0046857 Zfp101 protein_coding protein_coding MGP_AJ_T0046858.1 MGP_AJ_G0023486.1 mouse_genomes_project 17 32175240 32184196 - Zfp101 protein_coding processed_transcript MGP_AJ_T0046852.1 MGP_AJ_G0023484.1 mouse_genomes_project 17 32084999 32097131 + MGP_AJ_P0046852 Zfp955b protein_coding protein_coding MGP_AJ_T0047406.1 MGP_AJ_G0023597.1 mouse_genomes_project 17 34587924 34603299 + MGP_AJ_P0047406 Cchcr1 protein_coding protein_coding MGP_AJ_T0047407.1 MGP_AJ_G0023597.1 mouse_genomes_project 17 34587940 34592810 + Cchcr1 protein_coding retained_intron MGP_AJ_T0047408.1 MGP_AJ_G0023597.1 mouse_genomes_project 17 34588000 34603318 + MGP_AJ_P0047408 Cchcr1 protein_coding protein_coding MGP_AJ_T0047409.1 MGP_AJ_G0023597.1 mouse_genomes_project 17 34588287 34603308 + MGP_AJ_P0047409 Cchcr1 protein_coding protein_coding MGP_AJ_T0047410.1 MGP_AJ_G0023597.1 mouse_genomes_project 17 34592094 34593441 + Cchcr1 protein_coding processed_transcript MGP_AJ_T0047411.1 MGP_AJ_G0023597.1 mouse_genomes_project 17 34596871 34597624 + Cchcr1 protein_coding retained_intron MGP_AJ_T0047412.1 MGP_AJ_G0023597.1 mouse_genomes_project 17 34601089 34601736 + Cchcr1 protein_coding retained_intron MGP_AJ_T0099648.1 MGP_AJ_G0037614.1 mouse_genomes_project 17 29460613 29460717 - Gm24661 snRNA snRNA MGP_AJ_T0048087.1 MGP_AJ_G0023820.1 mouse_genomes_project 17 48010442 48011994 - MGP_AJ_P0048087 1700122O11Rik protein_coding protein_coding MGP_AJ_T0000997.1 MGP_AJ_G0000928.1 mouse_genomes_project 17 84397134 84401199 - TEC TEC MGP_AJ_T0011420.1 MGP_AJ_G0009542.1 mouse_genomes_project 17 26929951 26930239 + Gm22146 misc_RNA misc_RNA MGP_AJ_T0045805.1 MGP_AJ_G0023224.1 mouse_genomes_project 17 21944997 21948084 + MGP_AJ_P0045805 Cldn6 protein_coding protein_coding MGP_AJ_T0047600.1 MGP_AJ_G0023642.1 mouse_genomes_project 17 36049344 36057617 + MGP_AJ_P0047600 Trim10 protein_coding protein_coding MGP_AJ_T0047577.1 MGP_AJ_G0023632.1 mouse_genomes_project 17 35432817 35435665 - MGP_AJ_P0047577 H2-M10.2 protein_coding protein_coding MGP_AJ_T0102393.1 MGP_AJ_G0040135.1 mouse_genomes_project 17 21377714 21378365 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0013252.1 MGP_AJ_G0011347.1 mouse_genomes_project 17 36963559 36963995 - processed_pseudogene processed_pseudogene MGP_AJ_T0045509.1 MGP_AJ_G0023110.1 mouse_genomes_project 17 8347825 9061788 + Park2 protein_coding retained_intron MGP_AJ_T0045510.1 MGP_AJ_G0023110.1 mouse_genomes_project 17 8347825 9061788 + Park2 protein_coding retained_intron MGP_AJ_T0045511.1 MGP_AJ_G0023110.1 mouse_genomes_project 17 8347825 9553239 + MGP_AJ_P0045511 Park2 protein_coding protein_coding MGP_AJ_T0045512.1 MGP_AJ_G0023110.1 mouse_genomes_project 17 8347832 8452800 + Park2 protein_coding processed_transcript MGP_AJ_T0045513.1 MGP_AJ_G0023110.1 mouse_genomes_project 17 8566644 9001079 + MGP_AJ_P0045513 Park2 protein_coding protein_coding MGP_AJ_T0045514.1 MGP_AJ_G0023110.1 mouse_genomes_project 17 8794902 9116289 + MGP_AJ_P0045514 Park2 protein_coding protein_coding MGP_AJ_T0045515.1 MGP_AJ_G0023110.1 mouse_genomes_project 17 9338152 9367359 + MGP_AJ_P0045515 Park2 protein_coding protein_coding MGP_AJ_T0045516.1 MGP_AJ_G0023110.1 mouse_genomes_project 17 9344750 9367359 + Park2 protein_coding processed_transcript MGP_AJ_T0045517.1 MGP_AJ_G0023110.1 mouse_genomes_project 17 9519765 9553234 + Park2 protein_coding processed_transcript MGP_AJ_T0046064.1 MGP_AJ_G0023295.1 mouse_genomes_project 17 23385439 23461502 + MGP_AJ_P0046064 Ift140 protein_coding protein_coding MGP_AJ_T0046065.1 MGP_AJ_G0023295.1 mouse_genomes_project 17 23385739 23468180 + MGP_AJ_P0046065 Ift140 protein_coding protein_coding MGP_AJ_T0046066.1 MGP_AJ_G0023295.1 mouse_genomes_project 17 23385747 23388257 + Ift140 protein_coding processed_transcript MGP_AJ_T0046067.1 MGP_AJ_G0023295.1 mouse_genomes_project 17 23394986 23465431 + Ift140 protein_coding retained_intron MGP_AJ_T0046068.1 MGP_AJ_G0023295.1 mouse_genomes_project 17 23395222 23406326 + MGP_AJ_P0046068 Ift140 protein_coding protein_coding MGP_AJ_T0046069.1 MGP_AJ_G0023295.1 mouse_genomes_project 17 23413648 23456438 + Ift140 protein_coding processed_transcript MGP_AJ_T0046070.1 MGP_AJ_G0023295.1 mouse_genomes_project 17 23413697 23468188 + Ift140 protein_coding processed_transcript MGP_AJ_T0046073.1 MGP_AJ_G0023295.1 mouse_genomes_project 17 23459105 23461845 + Ift140 protein_coding retained_intron MGP_AJ_T0047085.1 MGP_AJ_G0023530.1 mouse_genomes_project 17 33120135 33125344 - MGP_AJ_P0047085 H2-Aa protein_coding protein_coding MGP_AJ_T0047086.1 MGP_AJ_G0023530.1 mouse_genomes_project 17 33120156 33125308 - MGP_AJ_P0047086 H2-Aa protein_coding protein_coding MGP_AJ_T0047087.1 MGP_AJ_G0023530.1 mouse_genomes_project 17 33121161 33125294 - H2-Aa protein_coding retained_intron MGP_AJ_T0047088.1 MGP_AJ_G0023530.1 mouse_genomes_project 17 33123992 33125336 - H2-Aa protein_coding processed_transcript MGP_AJ_T0048578.1 MGP_AJ_G0023990.1 mouse_genomes_project 17 75276181 75667369 + MGP_AJ_P0048578 Ltbp1 protein_coding protein_coding MGP_AJ_T0048579.1 MGP_AJ_G0023990.1 mouse_genomes_project 17 75451532 75666938 + MGP_AJ_P0048579 Ltbp1 protein_coding protein_coding MGP_AJ_T0048580.1 MGP_AJ_G0023990.1 mouse_genomes_project 17 75451532 75623846 + MGP_AJ_P0048580 Ltbp1 protein_coding protein_coding MGP_AJ_T0048581.1 MGP_AJ_G0023990.1 mouse_genomes_project 17 75451633 75666924 + MGP_AJ_P0048581 Ltbp1 protein_coding protein_coding MGP_AJ_T0048582.1 MGP_AJ_G0023990.1 mouse_genomes_project 17 75565458 75569845 + Ltbp1 protein_coding retained_intron MGP_AJ_T0048583.1 MGP_AJ_G0023990.1 mouse_genomes_project 17 75659793 75668114 + Ltbp1 protein_coding retained_intron MGP_AJ_T0048429.1 MGP_AJ_G0023948.1 mouse_genomes_project 17 66806597 67515706 - MGP_AJ_P0048429 Ptprm protein_coding protein_coding MGP_AJ_T0048430.1 MGP_AJ_G0023948.1 mouse_genomes_project 17 66953208 67515276 - MGP_AJ_P0048430 Ptprm protein_coding unknown_likely_coding MGP_AJ_T0046008.1 MGP_AJ_G0023282.1 mouse_genomes_project 17 23119194 23125003 + MGP_AJ_P0046008 Hs3st6 protein_coding protein_coding MGP_AJ_T0003759.1 MGP_AJ_G0003379.1 mouse_genomes_project 17 34979975 34995593 + Gm16279 antisense antisense MGP_AJ_T0048442.1 MGP_AJ_G0023954.1 mouse_genomes_project 17 69329575 69463147 + MGP_AJ_P0048442 Epb41l3 protein_coding protein_coding MGP_AJ_T0048443.1 MGP_AJ_G0023954.1 mouse_genomes_project 17 69329575 69463147 + MGP_AJ_P0048443 Epb41l3 protein_coding protein_coding MGP_AJ_T0048444.1 MGP_AJ_G0023954.1 mouse_genomes_project 17 69377610 69463153 + MGP_AJ_P0048444 Epb41l3 protein_coding unknown_likely_coding MGP_AJ_T0045707.1 MGP_AJ_G0023182.1 mouse_genomes_project 17 18723389 18724310 + MGP_AJ_P0045707 Vmn1r229 protein_coding protein_coding MGP_AJ_T0010198.1 MGP_AJ_G0008320.1 mouse_genomes_project 17 32817146 32817206 + Mir219c miRNA miRNA MGP_AJ_T0013306.1 MGP_AJ_G0011401.1 mouse_genomes_project 17 95272480 95272655 - processed_pseudogene processed_pseudogene MGP_AJ_T0100931.1 MGP_AJ_G0038897.1 mouse_genomes_project 17 65072580 65072712 - Gm25344 snoRNA snoRNA MGP_AJ_T0048180.1 MGP_AJ_G0023848.1 mouse_genomes_project 17 53518603 53551604 - MGP_AJ_P0048180 Pp2d1 protein_coding protein_coding MGP_AJ_T0047254.1 MGP_AJ_G0023563.1 mouse_genomes_project 17 33947455 33953907 + MGP_AJ_P0047254 Hspa1l protein_coding protein_coding MGP_AJ_T0100925.1 MGP_AJ_G0038891.1 mouse_genomes_project 17 36021296 36021423 - Gm25973 snoRNA snoRNA MGP_AJ_T0101749.1 MGP_AJ_G0039679.1 mouse_genomes_project 17 63748751 63749090 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0000989.1 MGP_AJ_G0000920.1 mouse_genomes_project 17 51858865 51860770 + TEC TEC MGP_AJ_T0100935.1 MGP_AJ_G0038901.1 mouse_genomes_project 17 73439005 73439110 + Gm25406 snoRNA snoRNA MGP_AJ_T0048278.1 MGP_AJ_G0023887.1 mouse_genomes_project 17 56695580 56707177 + Safb protein_coding retained_intron MGP_AJ_T0048279.1 MGP_AJ_G0023887.1 mouse_genomes_project 17 56695729 56717242 + MGP_AJ_P0048279 Safb protein_coding protein_coding MGP_AJ_T0048280.1 MGP_AJ_G0023887.1 mouse_genomes_project 17 56695737 56704374 + MGP_AJ_P0048280 Safb protein_coding protein_coding MGP_AJ_T0048281.1 MGP_AJ_G0023887.1 mouse_genomes_project 17 56695813 56717317 + MGP_AJ_P0048281 Safb protein_coding protein_coding MGP_AJ_T0048282.1 MGP_AJ_G0023887.1 mouse_genomes_project 17 56699595 56712204 + MGP_AJ_P0048282 Safb protein_coding nonsense_mediated_decay MGP_AJ_T0048283.1 MGP_AJ_G0023887.1 mouse_genomes_project 17 56705167 56707165 + Safb protein_coding retained_intron MGP_AJ_T0048284.1 MGP_AJ_G0023887.1 mouse_genomes_project 17 56708423 56717303 + Safb protein_coding retained_intron MGP_AJ_T0048285.1 MGP_AJ_G0023887.1 mouse_genomes_project 17 56712360 56715431 + Safb protein_coding retained_intron MGP_AJ_T0048286.1 MGP_AJ_G0023887.1 mouse_genomes_project 17 56713992 56715566 + Safb protein_coding retained_intron MGP_AJ_T0048287.1 MGP_AJ_G0023887.1 mouse_genomes_project 17 56715381 56716676 + Safb protein_coding retained_intron MGP_AJ_T0048288.1 MGP_AJ_G0023887.1 mouse_genomes_project 17 56716244 56717317 + Safb protein_coding retained_intron MGP_AJ_T0048289.1 MGP_AJ_G0023887.1 mouse_genomes_project 17 56716762 56717297 + Safb protein_coding retained_intron MGP_AJ_T0047980.1 MGP_AJ_G0023790.1 mouse_genomes_project 17 46689213 46697879 - MGP_AJ_P0047980 Ptcra protein_coding protein_coding MGP_AJ_T0046689.1 MGP_AJ_G0023440.1 mouse_genomes_project 17 29871152 29874465 - MGP_AJ_P0046689 Tff2 protein_coding protein_coding MGP_AJ_T0047233.1 MGP_AJ_G0023559.1 mouse_genomes_project 17 33872157 33888253 + MGP_AJ_P0047233 Ehmt2 protein_coding protein_coding MGP_AJ_T0047234.1 MGP_AJ_G0023559.1 mouse_genomes_project 17 33872187 33888249 + MGP_AJ_P0047234 Ehmt2 protein_coding protein_coding MGP_AJ_T0047235.1 MGP_AJ_G0023559.1 mouse_genomes_project 17 33872642 33888246 + MGP_AJ_P0047235 Ehmt2 protein_coding protein_coding MGP_AJ_T0047236.1 MGP_AJ_G0023559.1 mouse_genomes_project 17 33872659 33888253 + MGP_AJ_P0047236 Ehmt2 protein_coding protein_coding MGP_AJ_T0047237.1 MGP_AJ_G0023559.1 mouse_genomes_project 17 33873382 33877019 + Ehmt2 protein_coding processed_transcript MGP_AJ_T0047238.1 MGP_AJ_G0023559.1 mouse_genomes_project 17 33879596 33880645 + Ehmt2 protein_coding retained_intron MGP_AJ_T0047239.1 MGP_AJ_G0023559.1 mouse_genomes_project 17 33879633 33880434 + Ehmt2 protein_coding retained_intron MGP_AJ_T0047240.1 MGP_AJ_G0023559.1 mouse_genomes_project 17 33880303 33881019 + Ehmt2 protein_coding retained_intron MGP_AJ_T0047241.1 MGP_AJ_G0023559.1 mouse_genomes_project 17 33880395 33882952 + MGP_AJ_P0047241 Ehmt2 protein_coding protein_coding MGP_AJ_T0047242.1 MGP_AJ_G0023559.1 mouse_genomes_project 17 33881137 33882837 + Ehmt2 protein_coding processed_transcript MGP_AJ_T0047243.1 MGP_AJ_G0023559.1 mouse_genomes_project 17 33881791 33888249 + MGP_AJ_P0047243 Ehmt2 protein_coding nonsense_mediated_decay MGP_AJ_T0047244.1 MGP_AJ_G0023559.1 mouse_genomes_project 17 33881793 33883196 + MGP_AJ_P0047244 Ehmt2 protein_coding protein_coding MGP_AJ_T0047245.1 MGP_AJ_G0023559.1 mouse_genomes_project 17 33883038 33885896 + Ehmt2 protein_coding retained_intron MGP_AJ_T0047246.1 MGP_AJ_G0023559.1 mouse_genomes_project 17 33885368 33888254 + Ehmt2 protein_coding retained_intron MGP_AJ_T0046602.1 MGP_AJ_G0023416.1 mouse_genomes_project 17 27646451 27659905 + MGP_AJ_P0046602 Rab44 protein_coding protein_coding MGP_AJ_T0046603.1 MGP_AJ_G0023416.1 mouse_genomes_project 17 27647733 27659168 + Rab44 protein_coding processed_transcript MGP_AJ_T0003750.1 MGP_AJ_G0003371.1 mouse_genomes_project 17 33041058 33045583 - Gm20496 antisense antisense MGP_AJ_T0003751.1 MGP_AJ_G0003371.1 mouse_genomes_project 17 33041722 33047051 - Gm20496 antisense antisense MGP_AJ_T0047587.1 MGP_AJ_G0023640.1 mouse_genomes_project 17 36015514 36016230 + Trim26 protein_coding retained_intron MGP_AJ_T0047588.1 MGP_AJ_G0023640.1 mouse_genomes_project 17 36015521 36035286 + Trim26 protein_coding retained_intron MGP_AJ_T0047589.1 MGP_AJ_G0023640.1 mouse_genomes_project 17 36015521 36038632 + MGP_AJ_P0047589 Trim26 protein_coding protein_coding MGP_AJ_T0047590.1 MGP_AJ_G0023640.1 mouse_genomes_project 17 36015523 36038650 + MGP_AJ_P0047590 Trim26 protein_coding protein_coding MGP_AJ_T0047591.1 MGP_AJ_G0023640.1 mouse_genomes_project 17 36015526 36038632 + MGP_AJ_P0047591 Trim26 protein_coding protein_coding MGP_AJ_T0047592.1 MGP_AJ_G0023640.1 mouse_genomes_project 17 36015553 36031944 + MGP_AJ_P0047592 Trim26 protein_coding protein_coding MGP_AJ_T0047593.1 MGP_AJ_G0023640.1 mouse_genomes_project 17 36015564 36036882 + MGP_AJ_P0047593 Trim26 protein_coding protein_coding MGP_AJ_T0047594.1 MGP_AJ_G0023640.1 mouse_genomes_project 17 36015564 36038649 + MGP_AJ_P0047594 Trim26 protein_coding protein_coding MGP_AJ_T0047595.1 MGP_AJ_G0023640.1 mouse_genomes_project 17 36031756 36037191 + MGP_AJ_P0047595 Trim26 protein_coding protein_coding MGP_AJ_T0047596.1 MGP_AJ_G0023640.1 mouse_genomes_project 17 36033887 36038650 + Trim26 protein_coding processed_transcript MGP_AJ_T0047167.1 MGP_AJ_G0023546.1 mouse_genomes_project 17 33527591 33531196 + MGP_AJ_P0047167 Prrt1 protein_coding protein_coding MGP_AJ_T0047168.1 MGP_AJ_G0023546.1 mouse_genomes_project 17 33529461 33530467 + Prrt1 protein_coding retained_intron MGP_AJ_T0047928.1 MGP_AJ_G0023772.1 mouse_genomes_project 17 46349098 46351949 + MGP_AJ_P0047928 Crip3 protein_coding protein_coding MGP_AJ_T0047929.1 MGP_AJ_G0023772.1 mouse_genomes_project 17 46349114 46351750 + Crip3 protein_coding retained_intron MGP_AJ_T0047930.1 MGP_AJ_G0023772.1 mouse_genomes_project 17 46349114 46351944 + MGP_AJ_P0047930 Crip3 protein_coding protein_coding MGP_AJ_T0047931.1 MGP_AJ_G0023772.1 mouse_genomes_project 17 46349123 46351588 + MGP_AJ_P0047931 Crip3 protein_coding protein_coding MGP_AJ_T0047932.1 MGP_AJ_G0023772.1 mouse_genomes_project 17 46349142 46350658 + Crip3 protein_coding processed_transcript MGP_AJ_T0047933.1 MGP_AJ_G0023772.1 mouse_genomes_project 17 46350847 46351895 + Crip3 protein_coding retained_intron MGP_AJ_T0047934.1 MGP_AJ_G0023772.1 mouse_genomes_project 17 46351137 46351870 + Crip3 protein_coding retained_intron MGP_AJ_T0045917.1 MGP_AJ_G0023259.1 mouse_genomes_project 17 22796433 22800199 - Dnase1l2 protein_coding retained_intron MGP_AJ_T0045918.1 MGP_AJ_G0023259.1 mouse_genomes_project 17 22796439 22801103 - MGP_AJ_P0045918 Dnase1l2 protein_coding protein_coding MGP_AJ_T0045919.1 MGP_AJ_G0023259.1 mouse_genomes_project 17 22798591 22801082 - MGP_AJ_P0045919 Dnase1l2 protein_coding protein_coding MGP_AJ_T0045920.1 MGP_AJ_G0023259.1 mouse_genomes_project 17 22798782 22800151 - MGP_AJ_P0045920 Dnase1l2 protein_coding nonsense_mediated_decay MGP_AJ_T0045921.1 MGP_AJ_G0023259.1 mouse_genomes_project 17 22799514 22800699 - MGP_AJ_P0045921 Dnase1l2 protein_coding protein_coding MGP_AJ_T0045922.1 MGP_AJ_G0023259.1 mouse_genomes_project 17 22799712 22801102 - MGP_AJ_P0045922 Dnase1l2 protein_coding nonsense_mediated_decay MGP_AJ_T0045673.1 MGP_AJ_G0023150.1 mouse_genomes_project 17 15494936 15506947 - MGP_AJ_P0045673 Has1 protein_coding protein_coding MGP_AJ_T0098417.1 MGP_AJ_G0036401.1 mouse_genomes_project 17 32206906 32208276 + pseudogene pseudogene MGP_AJ_T0102411.1 MGP_AJ_G0040153.1 mouse_genomes_project 17 35186848 35190072 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0006992.1 MGP_AJ_G0005748.1 mouse_genomes_project 17 87735211 87741886 - 4833418N02Rik lincRNA lincRNA MGP_AJ_T0006993.1 MGP_AJ_G0005748.1 mouse_genomes_project 17 87735246 87743007 - 4833418N02Rik lincRNA lincRNA MGP_AJ_T0006994.1 MGP_AJ_G0005748.1 mouse_genomes_project 17 87735572 87742693 - 4833418N02Rik lincRNA lincRNA MGP_AJ_T0006995.1 MGP_AJ_G0005748.1 mouse_genomes_project 17 87740435 87742972 - 4833418N02Rik lincRNA lincRNA MGP_AJ_T0048682.1 MGP_AJ_G0024038.1 mouse_genomes_project 17 84898618 85010249 + MGP_AJ_P0048682 Plekhh2 protein_coding protein_coding MGP_AJ_T0047561.1 MGP_AJ_G0023627.1 mouse_genomes_project 17 35304677 35308941 - MGP_AJ_P0047561 H2-K1 protein_coding protein_coding MGP_AJ_T0045815.1 MGP_AJ_G0023230.1 mouse_genomes_project 17 22015420 22033875 - MGP_AJ_P0045815 Flywch1 protein_coding unknown_likely_coding MGP_AJ_T0045816.1 MGP_AJ_G0023230.1 mouse_genomes_project 17 22017891 22033873 - MGP_AJ_P0045816 Flywch1 protein_coding protein_coding MGP_AJ_T0045817.1 MGP_AJ_G0023230.1 mouse_genomes_project 17 22017900 22026256 - MGP_AJ_P0045817 Flywch1 protein_coding protein_coding MGP_AJ_T0047316.1 MGP_AJ_G0023575.1 mouse_genomes_project 17 34054180 34059116 - MGP_AJ_P0047316 Ly6g6f protein_coding protein_coding MGP_AJ_T0045727.1 MGP_AJ_G0023195.1 mouse_genomes_project 17 19418184 19430474 + MGP_AJ_P0045727 Zfp54 protein_coding protein_coding MGP_AJ_T0045728.1 MGP_AJ_G0023195.1 mouse_genomes_project 17 19418190 19429988 + MGP_AJ_P0045728 Zfp54 protein_coding protein_coding MGP_AJ_T0045729.1 MGP_AJ_G0023195.1 mouse_genomes_project 17 19418215 19428779 + MGP_AJ_P0045729 Zfp54 protein_coding protein_coding MGP_AJ_T0047667.1 MGP_AJ_G0023667.1 mouse_genomes_project 17 36531206 36532339 - MGP_AJ_P0047667 protein_coding protein_coding MGP_AJ_T0046763.1 MGP_AJ_G0023457.1 mouse_genomes_project 17 30962746 30997370 - MGP_AJ_P0046763 Brd4 protein_coding unknown_likely_coding MGP_AJ_T0046764.1 MGP_AJ_G0023457.1 mouse_genomes_project 17 30963839 31051745 - MGP_AJ_P0046764 Brd4 protein_coding protein_coding MGP_AJ_T0046765.1 MGP_AJ_G0023457.1 mouse_genomes_project 17 30963839 31051738 - MGP_AJ_P0046765 Brd4 protein_coding protein_coding MGP_AJ_T0046766.1 MGP_AJ_G0023457.1 mouse_genomes_project 17 30963841 31051738 - MGP_AJ_P0046766 Brd4 protein_coding protein_coding MGP_AJ_T0046767.1 MGP_AJ_G0023457.1 mouse_genomes_project 17 30972475 31051745 - MGP_AJ_P0046767 Brd4 protein_coding protein_coding MGP_AJ_T0046768.1 MGP_AJ_G0023457.1 mouse_genomes_project 17 30974322 31051758 - MGP_AJ_P0046768 Brd4 protein_coding protein_coding MGP_AJ_T0046769.1 MGP_AJ_G0023457.1 mouse_genomes_project 17 30981164 31052357 - MGP_AJ_P0046769 Brd4 protein_coding protein_coding MGP_AJ_T0046770.1 MGP_AJ_G0023457.1 mouse_genomes_project 17 30981199 31052312 - MGP_AJ_P0046770 Brd4 protein_coding nonsense_mediated_decay MGP_AJ_T0010197.1 MGP_AJ_G0008319.1 mouse_genomes_project 17 32817117 32817227 - Mir219a-1 miRNA miRNA MGP_AJ_T0099653.1 MGP_AJ_G0037619.1 mouse_genomes_project 17 34777167 34777274 - Gm23864 snRNA snRNA MGP_AJ_T0048095.1 MGP_AJ_G0023826.1 mouse_genomes_project 17 48241942 48253006 + MGP_AJ_P0048095 Treml4 protein_coding protein_coding MGP_AJ_T0048096.1 MGP_AJ_G0023826.1 mouse_genomes_project 17 48241984 48252139 + MGP_AJ_P0048096 Treml4 protein_coding protein_coding MGP_AJ_T0048097.1 MGP_AJ_G0023826.1 mouse_genomes_project 17 48241984 48252139 + MGP_AJ_P0048097 Treml4 protein_coding protein_coding MGP_AJ_T0048098.1 MGP_AJ_G0023826.1 mouse_genomes_project 17 48241988 48252312 + MGP_AJ_P0048098 Treml4 protein_coding protein_coding MGP_AJ_T0048099.1 MGP_AJ_G0023826.1 mouse_genomes_project 17 48242020 48252146 + MGP_AJ_P0048099 Treml4 protein_coding protein_coding MGP_AJ_T0048100.1 MGP_AJ_G0023826.1 mouse_genomes_project 17 48250083 48252158 + Treml4 protein_coding retained_intron MGP_AJ_T0099664.1 MGP_AJ_G0037630.1 mouse_genomes_project 17 59653347 59653454 - Gm23203 snRNA snRNA MGP_AJ_T0046693.1 MGP_AJ_G0023443.1 mouse_genomes_project 17 29939080 29973967 + MGP_AJ_P0046693 Ubash3a protein_coding protein_coding MGP_AJ_T0046694.1 MGP_AJ_G0023443.1 mouse_genomes_project 17 29939287 29947452 + MGP_AJ_P0046694 Ubash3a protein_coding nonsense_mediated_decay MGP_AJ_T0046695.1 MGP_AJ_G0023443.1 mouse_genomes_project 17 29939296 29945109 + MGP_AJ_P0046695 Ubash3a protein_coding protein_coding MGP_AJ_T0046696.1 MGP_AJ_G0023443.1 mouse_genomes_project 17 29943316 29973967 + Ubash3a protein_coding processed_transcript MGP_AJ_T0046697.1 MGP_AJ_G0023443.1 mouse_genomes_project 17 29943500 29949203 + Ubash3a protein_coding processed_transcript MGP_AJ_T0003743.1 MGP_AJ_G0003367.1 mouse_genomes_project 17 31606277 31618473 + Gm26693 antisense antisense MGP_AJ_T0013278.1 MGP_AJ_G0011373.1 mouse_genomes_project 17 54024532 54025659 - processed_pseudogene processed_pseudogene MGP_AJ_T0102430.1 MGP_AJ_G0040172.1 mouse_genomes_project 17 36150889 36153076 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0045737.1 MGP_AJ_G0023203.1 mouse_genomes_project 17 19738990 19753588 + MGP_AJ_P0045737 Zfp229 protein_coding protein_coding MGP_AJ_T0045738.1 MGP_AJ_G0023203.1 mouse_genomes_project 17 19741876 19744278 + Zfp229 protein_coding processed_transcript MGP_AJ_T0045739.1 MGP_AJ_G0023203.1 mouse_genomes_project 17 19741909 19743114 + Zfp229 protein_coding processed_transcript MGP_AJ_T0045740.1 MGP_AJ_G0023203.1 mouse_genomes_project 17 19741920 19757495 + MGP_AJ_P0045740 Zfp229 protein_coding protein_coding MGP_AJ_T0045741.1 MGP_AJ_G0023203.1 mouse_genomes_project 17 19741920 19778380 + MGP_AJ_P0045741 Zfp229 protein_coding protein_coding MGP_AJ_T0045742.1 MGP_AJ_G0023203.1 mouse_genomes_project 17 19744108 19757496 + MGP_AJ_P0045742 Zfp229 protein_coding protein_coding MGP_AJ_T0047219.1 MGP_AJ_G0023556.1 mouse_genomes_project 17 33826619 33853039 - MGP_AJ_P0047219 Gm20547 protein_coding protein_coding MGP_AJ_T0047220.1 MGP_AJ_G0023556.1 mouse_genomes_project 17 33826633 33842718 - MGP_AJ_P0047220 Gm20547 protein_coding protein_coding MGP_AJ_T0100918.1 MGP_AJ_G0038884.1 mouse_genomes_project 17 23085774 23085908 + Snora64 snoRNA snoRNA MGP_AJ_T0010196.1 MGP_AJ_G0008318.1 mouse_genomes_project 17 32669205 32669263 - Gm27775 miRNA miRNA MGP_AJ_T0048088.1 MGP_AJ_G0023821.1 mouse_genomes_project 17 48056430 48057699 + MGP_AJ_P0048088 1700067P10Rik protein_coding protein_coding MGP_AJ_T0046034.1 MGP_AJ_G0023291.1 mouse_genomes_project 17 23257235 23258408 + MGP_AJ_P0046034 Mrps34 protein_coding protein_coding MGP_AJ_T0046035.1 MGP_AJ_G0023291.1 mouse_genomes_project 17 23257242 23259631 + MGP_AJ_P0046035 Mrps34 protein_coding nonsense_mediated_decay MGP_AJ_T0046036.1 MGP_AJ_G0023291.1 mouse_genomes_project 17 23257254 23258235 + Mrps34 protein_coding retained_intron MGP_AJ_T0048684.1 MGP_AJ_G0024040.1 mouse_genomes_project 17 85046981 85071702 - MGP_AJ_P0048684 Abcg5 protein_coding protein_coding MGP_AJ_T0048685.1 MGP_AJ_G0024040.1 mouse_genomes_project 17 85047235 85070893 - MGP_AJ_P0048685 Abcg5 protein_coding protein_coding MGP_AJ_T0048686.1 MGP_AJ_G0024040.1 mouse_genomes_project 17 85058608 85063057 - Abcg5 protein_coding processed_transcript MGP_AJ_T0048687.1 MGP_AJ_G0024040.1 mouse_genomes_project 17 85059086 85065137 - Abcg5 protein_coding retained_intron MGP_AJ_T0099650.1 MGP_AJ_G0037616.1 mouse_genomes_project 17 32505156 32505232 + Gm22943 snRNA snRNA MGP_AJ_T0047619.1 MGP_AJ_G0023649.1 mouse_genomes_project 17 36159357 36162892 - MGP_AJ_P0047619 2410137M14Rik protein_coding protein_coding MGP_AJ_T0047620.1 MGP_AJ_G0023649.1 mouse_genomes_project 17 36159494 36162872 - MGP_AJ_P0047620 2410137M14Rik protein_coding protein_coding MGP_AJ_T0047747.1 MGP_AJ_G0023729.1 mouse_genomes_project 17 42899643 42972710 + MGP_AJ_P0047747 Tnfrsf21 protein_coding protein_coding MGP_AJ_T0011441.1 MGP_AJ_G0009563.1 mouse_genomes_project 17 86026284 86026483 + Gm27502 misc_RNA misc_RNA MGP_AJ_T0006910.1 MGP_AJ_G0005685.1 mouse_genomes_project 17 19480485 19484187 - Gm26753 lincRNA lincRNA MGP_AJ_T0047656.1 MGP_AJ_G0023656.1 mouse_genomes_project 17 36347341 36348389 - MGP_AJ_P0047656 protein_coding protein_coding MGP_AJ_T0010210.1 MGP_AJ_G0008332.1 mouse_genomes_project 17 38783334 38783444 - Gm26429 miRNA miRNA MGP_AJ_T0013235.1 MGP_AJ_G0011330.1 mouse_genomes_project 17 33465508 33465915 - processed_pseudogene processed_pseudogene MGP_AJ_T0045839.1 MGP_AJ_G0023236.1 mouse_genomes_project 17 22114893 22124953 + Prss32 protein_coding processed_transcript MGP_AJ_T0045840.1 MGP_AJ_G0023236.1 mouse_genomes_project 17 22124032 22130202 + MGP_AJ_P0045840 Prss32 protein_coding protein_coding MGP_AJ_T0045841.1 MGP_AJ_G0023236.1 mouse_genomes_project 17 22124275 22129762 + MGP_AJ_P0045841 Prss32 protein_coding nonsense_mediated_decay MGP_AJ_T0013231.1 MGP_AJ_G0011326.1 mouse_genomes_project 17 32764081 32764344 - processed_pseudogene processed_pseudogene MGP_AJ_T0003732.1 MGP_AJ_G0003360.1 mouse_genomes_project 17 27358803 27363148 - Pnpla1os antisense antisense MGP_AJ_T0013259.1 MGP_AJ_G0011354.1 mouse_genomes_project 17 37216680 37217330 + processed_pseudogene processed_pseudogene MGP_AJ_T0047140.1 MGP_AJ_G0023542.1 mouse_genomes_project 17 33499439 33501814 - MGP_AJ_P0047140 Rnf5 protein_coding unknown_likely_coding MGP_AJ_T0047141.1 MGP_AJ_G0023542.1 mouse_genomes_project 17 33499656 33501717 - Rnf5 protein_coding retained_intron MGP_AJ_T0047142.1 MGP_AJ_G0023542.1 mouse_genomes_project 17 33500124 33502002 - Rnf5 protein_coding retained_intron MGP_AJ_T0048514.1 MGP_AJ_G0023967.1 mouse_genomes_project 17 71711889 71744947 - MGP_AJ_P0048514 Ndc80 protein_coding protein_coding MGP_AJ_T0047681.1 MGP_AJ_G0023677.1 mouse_genomes_project 17 36831870 36832870 - MGP_AJ_P0047681 Olfr114 protein_coding protein_coding MGP_AJ_T0046263.1 MGP_AJ_G0023341.1 mouse_genomes_project 17 24299073 24311419 - MGP_AJ_P0046263 Pigq protein_coding protein_coding MGP_AJ_T0046264.1 MGP_AJ_G0023341.1 mouse_genomes_project 17 24299074 24316140 - Pigq protein_coding retained_intron MGP_AJ_T0046265.1 MGP_AJ_G0023341.1 mouse_genomes_project 17 24299074 24316305 - MGP_AJ_P0046265 Pigq protein_coding protein_coding MGP_AJ_T0046266.1 MGP_AJ_G0023341.1 mouse_genomes_project 17 24299074 24316192 - MGP_AJ_P0046266 Pigq protein_coding protein_coding MGP_AJ_T0046267.1 MGP_AJ_G0023341.1 mouse_genomes_project 17 24300142 24307338 - MGP_AJ_P0046267 Pigq protein_coding nonsense_mediated_decay MGP_AJ_T0046268.1 MGP_AJ_G0023341.1 mouse_genomes_project 17 24300249 24303750 - Pigq protein_coding retained_intron MGP_AJ_T0046269.1 MGP_AJ_G0023341.1 mouse_genomes_project 17 24300291 24310318 - MGP_AJ_P0046269 Pigq protein_coding protein_coding MGP_AJ_T0046270.1 MGP_AJ_G0023341.1 mouse_genomes_project 17 24302405 24303490 - Pigq protein_coding retained_intron MGP_AJ_T0046271.1 MGP_AJ_G0023341.1 mouse_genomes_project 17 24306532 24316192 - Pigq protein_coding retained_intron MGP_AJ_T0046272.1 MGP_AJ_G0023341.1 mouse_genomes_project 17 24307615 24316190 - MGP_AJ_P0046272 Pigq protein_coding protein_coding MGP_AJ_T0046273.1 MGP_AJ_G0023341.1 mouse_genomes_project 17 24310731 24316186 - Pigq protein_coding retained_intron MGP_AJ_T0046274.1 MGP_AJ_G0023341.1 mouse_genomes_project 17 24311337 24317121 - MGP_AJ_P0046274 Pigq protein_coding protein_coding MGP_AJ_T0046275.1 MGP_AJ_G0023341.1 mouse_genomes_project 17 24311391 24318769 - MGP_AJ_P0046275 Pigq protein_coding protein_coding MGP_AJ_T0046276.1 MGP_AJ_G0023341.1 mouse_genomes_project 17 24311520 24317091 - MGP_AJ_P0046276 Pigq protein_coding protein_coding MGP_AJ_T0099658.1 MGP_AJ_G0037624.1 mouse_genomes_project 17 46142785 46142892 - Gm22474 snRNA snRNA MGP_AJ_T0046850.1 MGP_AJ_G0023482.1 mouse_genomes_project 17 32001347 32013802 + MGP_AJ_P0046850 protein_coding protein_coding MGP_AJ_T0048545.1 MGP_AJ_G0023982.1 mouse_genomes_project 17 74466862 74563763 - MGP_AJ_P0048545 Memo1 protein_coding protein_coding MGP_AJ_T0046463.1 MGP_AJ_G0023390.1 mouse_genomes_project 17 26546529 26560158 - MGP_AJ_P0046463 Tcp11 protein_coding protein_coding MGP_AJ_T0046464.1 MGP_AJ_G0023390.1 mouse_genomes_project 17 26546530 26560213 - MGP_AJ_P0046464 Tcp11 protein_coding protein_coding MGP_AJ_T0046465.1 MGP_AJ_G0023390.1 mouse_genomes_project 17 26546533 26560141 - MGP_AJ_P0046465 Tcp11 protein_coding protein_coding MGP_AJ_T0046466.1 MGP_AJ_G0023390.1 mouse_genomes_project 17 26546579 26548259 - Tcp11 protein_coding processed_transcript MGP_AJ_T0046467.1 MGP_AJ_G0023390.1 mouse_genomes_project 17 26549408 26560213 - MGP_AJ_P0046467 Tcp11 protein_coding protein_coding MGP_AJ_T0046468.1 MGP_AJ_G0023390.1 mouse_genomes_project 17 26554434 26560175 - MGP_AJ_P0046468 Tcp11 protein_coding protein_coding MGP_AJ_T0046637.1 MGP_AJ_G0023424.1 mouse_genomes_project 17 28084056 28084566 - MGP_AJ_P0046637 Gm17657 protein_coding protein_coding MGP_AJ_T0003747.1 MGP_AJ_G0003369.1 mouse_genomes_project 17 32701794 32702673 - Gm19412 antisense antisense MGP_AJ_T0003748.1 MGP_AJ_G0003369.1 mouse_genomes_project 17 32702089 32702805 - Gm19412 antisense antisense MGP_AJ_T0003789.1 MGP_AJ_G0003402.1 mouse_genomes_project 17 86027543 86031510 - antisense antisense MGP_AJ_T0046326.1 MGP_AJ_G0023355.1 mouse_genomes_project 17 24603779 24638596 - MGP_AJ_P0046326 protein_coding protein_coding MGP_AJ_T0046327.1 MGP_AJ_G0023355.1 mouse_genomes_project 17 24604670 24638515 - MGP_AJ_P0046327 protein_coding protein_coding MGP_AJ_T0046328.1 MGP_AJ_G0023355.1 mouse_genomes_project 17 24604675 24638556 - MGP_AJ_P0046328 protein_coding unknown_likely_coding MGP_AJ_T0046329.1 MGP_AJ_G0023355.1 mouse_genomes_project 17 24605501 24608192 - MGP_AJ_P0046329 protein_coding protein_coding MGP_AJ_T0046330.1 MGP_AJ_G0023355.1 mouse_genomes_project 17 24607164 24608916 - protein_coding retained_intron MGP_AJ_T0046331.1 MGP_AJ_G0023355.1 mouse_genomes_project 17 24610236 24612538 - MGP_AJ_P0046331 protein_coding protein_coding MGP_AJ_T0099657.1 MGP_AJ_G0037623.1 mouse_genomes_project 17 45527547 45527628 + Gm25008 snRNA snRNA MGP_AJ_T0045733.1 MGP_AJ_G0023199.1 mouse_genomes_project 17 19557474 19578969 + MGP_AJ_P0045733 Zfp948 protein_coding protein_coding MGP_AJ_T0047548.1 MGP_AJ_G0023621.1 mouse_genomes_project 17 35106074 35113048 - MGP_AJ_P0047548 H2-T24 protein_coding protein_coding MGP_AJ_T0047549.1 MGP_AJ_G0023621.1 mouse_genomes_project 17 35106648 35113013 - MGP_AJ_P0047549 H2-T24 protein_coding protein_coding MGP_AJ_T0017559.1 MGP_AJ_G0015320.1 mouse_genomes_project 17 28478487 28485469 + Gm16758 processed_transcript processed_transcript MGP_AJ_T0006931.1 MGP_AJ_G0005703.1 mouse_genomes_project 17 27624222 27645106 + Gm16194 lincRNA lincRNA MGP_AJ_T0006932.1 MGP_AJ_G0005703.1 mouse_genomes_project 17 27624247 27645112 + Gm16194 lincRNA lincRNA MGP_AJ_T0006933.1 MGP_AJ_G0005703.1 mouse_genomes_project 17 27624258 27631371 + Gm16194 lincRNA lincRNA MGP_AJ_T0006934.1 MGP_AJ_G0005703.1 mouse_genomes_project 17 27624276 27645224 + Gm16194 lincRNA lincRNA MGP_AJ_T0047387.1 MGP_AJ_G0023592.1 mouse_genomes_project 17 34211889 34223589 + MGP_AJ_P0047387 Ddx39b protein_coding protein_coding MGP_AJ_T0047388.1 MGP_AJ_G0023592.1 mouse_genomes_project 17 34212013 34223562 + MGP_AJ_P0047388 Ddx39b protein_coding protein_coding MGP_AJ_T0047389.1 MGP_AJ_G0023592.1 mouse_genomes_project 17 34212139 34213369 + Ddx39b protein_coding processed_transcript MGP_AJ_T0047390.1 MGP_AJ_G0023592.1 mouse_genomes_project 17 34212812 34223558 + MGP_AJ_P0047390 Ddx39b protein_coding protein_coding MGP_AJ_T0045437.1 MGP_AJ_G0023086.1 mouse_genomes_project 17 4107229 4195255 - MGP_AJ_P0045437 Rsph3a protein_coding protein_coding MGP_AJ_T0046730.1 MGP_AJ_G0023449.1 mouse_genomes_project 17 30332400 30356628 + MGP_AJ_P0046730 Pknox1 protein_coding protein_coding MGP_AJ_T0046731.1 MGP_AJ_G0023449.1 mouse_genomes_project 17 30334148 30358830 + MGP_AJ_P0046731 Pknox1 protein_coding protein_coding MGP_AJ_T0046732.1 MGP_AJ_G0023449.1 mouse_genomes_project 17 30334292 30358826 + MGP_AJ_P0046732 Pknox1 protein_coding protein_coding MGP_AJ_T0046733.1 MGP_AJ_G0023449.1 mouse_genomes_project 17 30342449 30342876 + Pknox1 protein_coding processed_transcript MGP_AJ_T0046734.1 MGP_AJ_G0023449.1 mouse_genomes_project 17 30345643 30350424 + Pknox1 protein_coding retained_intron MGP_AJ_T0046735.1 MGP_AJ_G0023449.1 mouse_genomes_project 17 30353807 30354654 + Pknox1 protein_coding retained_intron MGP_AJ_T0010177.1 MGP_AJ_G0008299.1 mouse_genomes_project 17 22953731 22953825 + Gm24589 miRNA miRNA MGP_AJ_T0047531.1 MGP_AJ_G0023618.1 mouse_genomes_project 17 35046937 35059841 - MGP_AJ_P0047531 Abcf1 protein_coding protein_coding MGP_AJ_T0047532.1 MGP_AJ_G0023618.1 mouse_genomes_project 17 35047405 35048605 - Abcf1 protein_coding retained_intron MGP_AJ_T0047533.1 MGP_AJ_G0023618.1 mouse_genomes_project 17 35047419 35048307 - Abcf1 protein_coding retained_intron MGP_AJ_T0047534.1 MGP_AJ_G0023618.1 mouse_genomes_project 17 35048189 35049585 - Abcf1 protein_coding retained_intron MGP_AJ_T0047535.1 MGP_AJ_G0023618.1 mouse_genomes_project 17 35048788 35049733 - Abcf1 protein_coding retained_intron MGP_AJ_T0047536.1 MGP_AJ_G0023618.1 mouse_genomes_project 17 35051819 35054319 - Abcf1 protein_coding retained_intron MGP_AJ_T0047537.1 MGP_AJ_G0023618.1 mouse_genomes_project 17 35053775 35059439 - MGP_AJ_P0047537 Abcf1 protein_coding protein_coding MGP_AJ_T0047538.1 MGP_AJ_G0023618.1 mouse_genomes_project 17 35054300 35059841 - MGP_AJ_P0047538 Abcf1 protein_coding nonsense_mediated_decay MGP_AJ_T0048813.1 MGP_AJ_G0024078.1 mouse_genomes_project 17 95241784 95265162 - MGP_AJ_P0048813 Mettl4 protein_coding protein_coding MGP_AJ_T0046401.1 MGP_AJ_G0023373.1 mouse_genomes_project 17 25494082 25566820 + MGP_AJ_P0046401 Itpr3 protein_coding protein_coding MGP_AJ_T0048333.1 MGP_AJ_G0023913.1 mouse_genomes_project 17 57220388 57234235 - MGP_AJ_P0048333 protein_coding protein_coding MGP_AJ_T0047422.1 MGP_AJ_G0023604.1 mouse_genomes_project 17 34734759 34746235 - MGP_AJ_P0047422 Vars2 protein_coding protein_coding MGP_AJ_T0047423.1 MGP_AJ_G0023604.1 mouse_genomes_project 17 34734780 34744883 - Vars2 protein_coding retained_intron MGP_AJ_T0047424.1 MGP_AJ_G0023604.1 mouse_genomes_project 17 34735509 34742066 - MGP_AJ_P0047424 Vars2 protein_coding nonsense_mediated_decay MGP_AJ_T0047425.1 MGP_AJ_G0023604.1 mouse_genomes_project 17 34735676 34741609 - MGP_AJ_P0047425 Vars2 protein_coding nonsense_mediated_decay MGP_AJ_T0047426.1 MGP_AJ_G0023604.1 mouse_genomes_project 17 34735746 34737557 - Vars2 protein_coding retained_intron MGP_AJ_T0047427.1 MGP_AJ_G0023604.1 mouse_genomes_project 17 34735862 34736655 - Vars2 protein_coding retained_intron MGP_AJ_T0047428.1 MGP_AJ_G0023604.1 mouse_genomes_project 17 34738693 34739188 - Vars2 protein_coding retained_intron MGP_AJ_T0047429.1 MGP_AJ_G0023604.1 mouse_genomes_project 17 34738825 34741122 - MGP_AJ_P0047429 Vars2 protein_coding nonsense_mediated_decay MGP_AJ_T0047430.1 MGP_AJ_G0023604.1 mouse_genomes_project 17 34739166 34740786 - Vars2 protein_coding retained_intron MGP_AJ_T0047431.1 MGP_AJ_G0023604.1 mouse_genomes_project 17 34743031 34745376 - Vars2 protein_coding retained_intron MGP_AJ_T0047432.1 MGP_AJ_G0023604.1 mouse_genomes_project 17 34744737 34746183 - Vars2 protein_coding retained_intron MGP_AJ_T0047433.1 MGP_AJ_G0023604.1 mouse_genomes_project 17 34744821 34746192 - MGP_AJ_P0047433 Vars2 protein_coding nonsense_mediated_decay MGP_AJ_T0047657.1 MGP_AJ_G0023657.1 mouse_genomes_project 17 36347369 36348271 - MGP_AJ_P0047657 protein_coding protein_coding MGP_AJ_T0046157.1 MGP_AJ_G0023317.1 mouse_genomes_project 17 23937330 23942118 - MGP_AJ_P0046157 Sox8 protein_coding protein_coding MGP_AJ_T0046158.1 MGP_AJ_G0023317.1 mouse_genomes_project 17 23939433 23941646 - MGP_AJ_P0046158 Sox8 protein_coding protein_coding MGP_AJ_T0046159.1 MGP_AJ_G0023317.1 mouse_genomes_project 17 23940141 23942118 - MGP_AJ_P0046159 Sox8 protein_coding protein_coding MGP_AJ_T0102434.1 MGP_AJ_G0040176.1 mouse_genomes_project 17 36516889 36517817 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0045689.1 MGP_AJ_G0023164.1 mouse_genomes_project 17 17379706 17406875 + MGP_AJ_P0045689 Vmn2r100 protein_coding protein_coding MGP_AJ_T0006986.1 MGP_AJ_G0005742.1 mouse_genomes_project 17 79684752 79688083 + Gm17315 lincRNA lincRNA MGP_AJ_T0046907.1 MGP_AJ_G0023495.1 mouse_genomes_project 17 32551762 32559598 - MGP_AJ_P0046907 Angptl4 protein_coding protein_coding MGP_AJ_T0046908.1 MGP_AJ_G0023495.1 mouse_genomes_project 17 32552924 32559566 - MGP_AJ_P0046908 Angptl4 protein_coding nonsense_mediated_decay MGP_AJ_T0046909.1 MGP_AJ_G0023495.1 mouse_genomes_project 17 32554987 32556489 - Angptl4 protein_coding retained_intron MGP_AJ_T0046910.1 MGP_AJ_G0023495.1 mouse_genomes_project 17 32555028 32557167 - Angptl4 protein_coding processed_transcript MGP_AJ_T0045657.1 MGP_AJ_G0023147.1 mouse_genomes_project 17 15182862 15273029 - MGP_AJ_P0045657 Lnpep protein_coding protein_coding MGP_AJ_T0046172.1 MGP_AJ_G0023320.1 mouse_genomes_project 17 24089481 24097973 - MGP_AJ_P0046172 Chtf18 protein_coding protein_coding MGP_AJ_T0046173.1 MGP_AJ_G0023320.1 mouse_genomes_project 17 24089481 24097925 - MGP_AJ_P0046173 Chtf18 protein_coding nonsense_mediated_decay MGP_AJ_T0046174.1 MGP_AJ_G0023320.1 mouse_genomes_project 17 24089585 24097920 - Chtf18 protein_coding retained_intron MGP_AJ_T0046175.1 MGP_AJ_G0023320.1 mouse_genomes_project 17 24089601 24091457 - MGP_AJ_P0046175 Chtf18 protein_coding protein_coding MGP_AJ_T0046176.1 MGP_AJ_G0023320.1 mouse_genomes_project 17 24089602 24090341 - MGP_AJ_P0046176 Chtf18 protein_coding protein_coding MGP_AJ_T0046177.1 MGP_AJ_G0023320.1 mouse_genomes_project 17 24090824 24091454 - Chtf18 protein_coding retained_intron MGP_AJ_T0046178.1 MGP_AJ_G0023320.1 mouse_genomes_project 17 24096129 24097964 - MGP_AJ_P0046178 Chtf18 protein_coding protein_coding MGP_AJ_T0003777.1 MGP_AJ_G0003392.1 mouse_genomes_project 17 49819652 49823843 - Gm16555 antisense antisense MGP_AJ_T0047714.1 MGP_AJ_G0023704.1 mouse_genomes_project 17 38294560 38295268 - MGP_AJ_P0047714 Gm21903 protein_coding protein_coding MGP_AJ_T0046837.1 MGP_AJ_G0023476.1 mouse_genomes_project 17 31796902 31801373 + Zfp952 protein_coding processed_transcript MGP_AJ_T0046838.1 MGP_AJ_G0023476.1 mouse_genomes_project 17 31796970 31809227 + Zfp952 protein_coding processed_transcript MGP_AJ_T0046839.1 MGP_AJ_G0023476.1 mouse_genomes_project 17 31796970 31809227 + MGP_AJ_P0046839 Zfp952 protein_coding protein_coding MGP_AJ_T0046840.1 MGP_AJ_G0023476.1 mouse_genomes_project 17 31796974 31806856 + MGP_AJ_P0046840 Zfp952 protein_coding protein_coding MGP_AJ_T0048593.1 MGP_AJ_G0023996.1 mouse_genomes_project 17 78990604 79072328 - MGP_AJ_P0048593 Strn protein_coding protein_coding MGP_AJ_T0048594.1 MGP_AJ_G0023996.1 mouse_genomes_project 17 79002896 79020138 - MGP_AJ_P0048594 Strn protein_coding protein_coding MGP_AJ_T0046534.1 MGP_AJ_G0023400.1 mouse_genomes_project 17 27014470 27022673 + MGP_AJ_P0046534 Armc12 protein_coding protein_coding MGP_AJ_T0006949.1 MGP_AJ_G0005717.1 mouse_genomes_project 17 34818356 34840642 - Gm20442 lincRNA lincRNA MGP_AJ_T0099659.1 MGP_AJ_G0037625.1 mouse_genomes_project 17 47794913 47795083 - Gm25201 snRNA snRNA MGP_AJ_T0013287.1 MGP_AJ_G0011382.1 mouse_genomes_project 17 72931555 72932496 - processed_pseudogene processed_pseudogene MGP_AJ_T0102406.1 MGP_AJ_G0040148.1 mouse_genomes_project 17 33417976 33418131 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0048398.1 MGP_AJ_G0023941.1 mouse_genomes_project 17 66092766 66204444 - MGP_AJ_P0048398 protein_coding unknown_likely_coding MGP_AJ_T0048399.1 MGP_AJ_G0023941.1 mouse_genomes_project 17 66095076 66099434 - protein_coding processed_transcript MGP_AJ_T0048400.1 MGP_AJ_G0023941.1 mouse_genomes_project 17 66102823 66110243 - protein_coding processed_transcript MGP_AJ_T0048401.1 MGP_AJ_G0023941.1 mouse_genomes_project 17 66114333 66205055 - MGP_AJ_P0048401 protein_coding protein_coding MGP_AJ_T0048402.1 MGP_AJ_G0023941.1 mouse_genomes_project 17 66148492 66205077 - protein_coding retained_intron MGP_AJ_T0048403.1 MGP_AJ_G0023941.1 mouse_genomes_project 17 66162623 66205122 - protein_coding retained_intron MGP_AJ_T0048404.1 MGP_AJ_G0023941.1 mouse_genomes_project 17 66162964 66205072 - protein_coding retained_intron MGP_AJ_T0048405.1 MGP_AJ_G0023941.1 mouse_genomes_project 17 66176614 66177469 - protein_coding processed_transcript MGP_AJ_T0047229.1 MGP_AJ_G0023558.1 mouse_genomes_project 17 33850374 33866446 + MGP_AJ_P0047229 Zbtb12 protein_coding protein_coding MGP_AJ_T0047232.1 MGP_AJ_G0023558.1 mouse_genomes_project 17 33865559 33867868 + MGP_AJ_P0047232 Zbtb12 protein_coding protein_coding MGP_AJ_T0048241.1 MGP_AJ_G0023878.1 mouse_genomes_project 17 56353121 56361025 + MGP_AJ_P0048241 protein_coding protein_coding MGP_AJ_T0013218.1 MGP_AJ_G0011313.1 mouse_genomes_project 17 20004333 20004781 - processed_pseudogene processed_pseudogene MGP_AJ_T0102424.1 MGP_AJ_G0040166.1 mouse_genomes_project 17 35889014 35890595 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0101744.1 MGP_AJ_G0039676.1 mouse_genomes_project 17 24275072 24275449 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0101745.1 MGP_AJ_G0039676.1 mouse_genomes_project 17 24275078 24275269 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0006990.1 MGP_AJ_G0005746.1 mouse_genomes_project 17 86213673 86242289 - Gm29418 lincRNA lincRNA MGP_AJ_T0003727.1 MGP_AJ_G0003355.1 mouse_genomes_project 17 25014180 25018911 - Gm17218 antisense antisense MGP_AJ_T0046474.1 MGP_AJ_G0023392.1 mouse_genomes_project 17 26659342 26688995 + Zfp523 protein_coding retained_intron MGP_AJ_T0046475.1 MGP_AJ_G0023392.1 mouse_genomes_project 17 26659474 26688995 + MGP_AJ_P0046475 Zfp523 protein_coding protein_coding MGP_AJ_T0046476.1 MGP_AJ_G0023392.1 mouse_genomes_project 17 26659553 26688993 + MGP_AJ_P0046476 Zfp523 protein_coding protein_coding MGP_AJ_T0046477.1 MGP_AJ_G0023392.1 mouse_genomes_project 17 26672459 26680327 + Zfp523 protein_coding processed_transcript MGP_AJ_T0046478.1 MGP_AJ_G0023392.1 mouse_genomes_project 17 26680311 26685587 + MGP_AJ_P0046478 Zfp523 protein_coding protein_coding MGP_AJ_T0046479.1 MGP_AJ_G0023392.1 mouse_genomes_project 17 26685399 26688271 + MGP_AJ_P0046479 Zfp523 protein_coding protein_coding MGP_AJ_T0046480.1 MGP_AJ_G0023392.1 mouse_genomes_project 17 26685574 26688995 + MGP_AJ_P0046480 Zfp523 protein_coding nonsense_mediated_decay MGP_AJ_T0046481.1 MGP_AJ_G0023392.1 mouse_genomes_project 17 26687217 26688416 + Zfp523 protein_coding retained_intron MGP_AJ_T0047854.1 MGP_AJ_G0023758.1 mouse_genomes_project 17 45924794 45939616 - MGP_AJ_P0047854 protein_coding protein_coding MGP_AJ_T0047855.1 MGP_AJ_G0023758.1 mouse_genomes_project 17 45924794 45940170 - MGP_AJ_P0047855 protein_coding protein_coding MGP_AJ_T0047856.1 MGP_AJ_G0023758.1 mouse_genomes_project 17 45924797 45940178 - MGP_AJ_P0047856 protein_coding protein_coding MGP_AJ_T0047857.1 MGP_AJ_G0023758.1 mouse_genomes_project 17 45926280 45932666 - protein_coding retained_intron MGP_AJ_T0047858.1 MGP_AJ_G0023758.1 mouse_genomes_project 17 45926344 45940170 - MGP_AJ_P0047858 protein_coding protein_coding MGP_AJ_T0047859.1 MGP_AJ_G0023758.1 mouse_genomes_project 17 45926407 45932683 - protein_coding retained_intron MGP_AJ_T0047860.1 MGP_AJ_G0023758.1 mouse_genomes_project 17 45926513 45929174 - protein_coding retained_intron MGP_AJ_T0047861.1 MGP_AJ_G0023758.1 mouse_genomes_project 17 45926632 45939157 - MGP_AJ_P0047861 protein_coding protein_coding MGP_AJ_T0047862.1 MGP_AJ_G0023758.1 mouse_genomes_project 17 45926634 45932604 - protein_coding retained_intron MGP_AJ_T0047863.1 MGP_AJ_G0023758.1 mouse_genomes_project 17 45926659 45939157 - MGP_AJ_P0047863 protein_coding protein_coding MGP_AJ_T0047864.1 MGP_AJ_G0023758.1 mouse_genomes_project 17 45932997 45939157 - protein_coding retained_intron MGP_AJ_T0047721.1 MGP_AJ_G0023711.1 mouse_genomes_project 17 40162509 40188616 - MGP_AJ_P0047721 Crisp1 protein_coding protein_coding MGP_AJ_T0102380.1 MGP_AJ_G0040122.1 mouse_genomes_project 17 17871640 17872571 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0099652.1 MGP_AJ_G0037618.1 mouse_genomes_project 17 34023234 34023338 + Gm23421 snRNA snRNA MGP_AJ_T0046469.1 MGP_AJ_G0023391.1 mouse_genomes_project 17 26623036 26656988 + MGP_AJ_P0046469 Scube3 protein_coding protein_coding MGP_AJ_T0046470.1 MGP_AJ_G0023391.1 mouse_genomes_project 17 26634581 26653650 + Scube3 protein_coding processed_transcript MGP_AJ_T0046471.1 MGP_AJ_G0023391.1 mouse_genomes_project 17 26635738 26652281 + MGP_AJ_P0046471 Scube3 protein_coding protein_coding MGP_AJ_T0046472.1 MGP_AJ_G0023391.1 mouse_genomes_project 17 26642896 26655163 + Scube3 protein_coding processed_transcript MGP_AJ_T0046473.1 MGP_AJ_G0023391.1 mouse_genomes_project 17 26647944 26649784 + Scube3 protein_coding retained_intron MGP_AJ_T0048606.1 MGP_AJ_G0024002.1 mouse_genomes_project 17 79253213 79257355 + MGP_AJ_P0048606 Cebpzos protein_coding protein_coding MGP_AJ_T0048607.1 MGP_AJ_G0024002.1 mouse_genomes_project 17 79253230 79257355 + MGP_AJ_P0048607 Cebpzos protein_coding protein_coding MGP_AJ_T0048608.1 MGP_AJ_G0024002.1 mouse_genomes_project 17 79253413 79255170 + MGP_AJ_P0048608 Cebpzos protein_coding protein_coding MGP_AJ_T0046690.1 MGP_AJ_G0023441.1 mouse_genomes_project 17 29891962 29895620 - MGP_AJ_P0046690 Tff1 protein_coding protein_coding MGP_AJ_T0006914.1 MGP_AJ_G0005689.1 mouse_genomes_project 17 22004803 22012481 + 9530082P21Rik lincRNA lincRNA MGP_AJ_T0006915.1 MGP_AJ_G0005689.1 mouse_genomes_project 17 22010807 22015645 + 9530082P21Rik lincRNA lincRNA MGP_AJ_T0006916.1 MGP_AJ_G0005689.1 mouse_genomes_project 17 22010908 22012773 + 9530082P21Rik lincRNA lincRNA MGP_AJ_T0046853.1 MGP_AJ_G0023485.1 mouse_genomes_project 17 32128350 32154962 - MGP_AJ_P0046853 Zfp81 protein_coding protein_coding MGP_AJ_T0048688.1 MGP_AJ_G0024041.1 mouse_genomes_project 17 85071811 85089870 + MGP_AJ_P0048688 Abcg8 protein_coding protein_coding MGP_AJ_T0048689.1 MGP_AJ_G0024041.1 mouse_genomes_project 17 85071922 85089878 + MGP_AJ_P0048689 Abcg8 protein_coding protein_coding MGP_AJ_T0045425.1 MGP_AJ_G0023081.1 mouse_genomes_project 17 3192445 3225701 + protein_coding processed_transcript MGP_AJ_T0045426.1 MGP_AJ_G0023081.1 mouse_genomes_project 17 3192487 3296872 + MGP_AJ_P0045426 protein_coding protein_coding MGP_AJ_T0045427.1 MGP_AJ_G0023081.1 mouse_genomes_project 17 3209061 3212515 + protein_coding processed_transcript MGP_AJ_T0045428.1 MGP_AJ_G0023081.1 mouse_genomes_project 17 3224119 3225698 + protein_coding processed_transcript MGP_AJ_T0045429.1 MGP_AJ_G0023081.1 mouse_genomes_project 17 3225056 3321026 + protein_coding retained_intron MGP_AJ_T0045430.1 MGP_AJ_G0023081.1 mouse_genomes_project 17 3267158 3319693 + MGP_AJ_P0045430 protein_coding unknown_likely_coding MGP_AJ_T0047967.1 MGP_AJ_G0023785.1 mouse_genomes_project 17 46613626 46616651 + MGP_AJ_P0047967 Mea1 protein_coding protein_coding MGP_AJ_T0048381.1 MGP_AJ_G0023937.1 mouse_genomes_project 17 65764281 65887968 - MGP_AJ_P0048381 Rab31 protein_coding protein_coding MGP_AJ_T0102420.1 MGP_AJ_G0040162.1 mouse_genomes_project 17 35716100 35716326 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0013223.1 MGP_AJ_G0011318.1 mouse_genomes_project 17 22771942 22778495 + processed_pseudogene processed_pseudogene MGP_AJ_T0045755.1 MGP_AJ_G0023210.1 mouse_genomes_project 17 20486395 20509568 + MGP_AJ_P0045755 Zfp758 protein_coding protein_coding MGP_AJ_T0045756.1 MGP_AJ_G0023210.1 mouse_genomes_project 17 20486395 20509568 + MGP_AJ_P0045756 Zfp758 protein_coding protein_coding MGP_AJ_T0045757.1 MGP_AJ_G0023210.1 mouse_genomes_project 17 20486397 20508035 + MGP_AJ_P0045757 Zfp758 protein_coding protein_coding MGP_AJ_T0045758.1 MGP_AJ_G0023210.1 mouse_genomes_project 17 20486464 20509568 + MGP_AJ_P0045758 Zfp758 protein_coding protein_coding MGP_AJ_T0048203.1 MGP_AJ_G0023860.1 mouse_genomes_project 17 55954508 55962714 + MGP_AJ_P0048203 Zfp959 protein_coding protein_coding MGP_AJ_T0047381.1 MGP_AJ_G0023591.1 mouse_genomes_project 17 34203848 34208927 + Atp6v1g2 protein_coding retained_intron MGP_AJ_T0047382.1 MGP_AJ_G0023591.1 mouse_genomes_project 17 34205256 34207965 + MGP_AJ_P0047382 Atp6v1g2 protein_coding protein_coding MGP_AJ_T0047383.1 MGP_AJ_G0023591.1 mouse_genomes_project 17 34206044 34208064 + MGP_AJ_P0047383 Atp6v1g2 protein_coding protein_coding MGP_AJ_T0047384.1 MGP_AJ_G0023591.1 mouse_genomes_project 17 34206058 34208233 + Atp6v1g2 protein_coding retained_intron MGP_AJ_T0047385.1 MGP_AJ_G0023591.1 mouse_genomes_project 17 34206725 34208927 + MGP_AJ_P0047385 Atp6v1g2 protein_coding protein_coding MGP_AJ_T0047386.1 MGP_AJ_G0023591.1 mouse_genomes_project 17 34206819 34208127 + Atp6v1g2 protein_coding retained_intron MGP_AJ_T0047701.1 MGP_AJ_G0023695.1 mouse_genomes_project 17 37392401 37395883 + MGP_AJ_P0047701 protein_coding protein_coding MGP_AJ_T0045389.1 MGP_AJ_G0023072.1 mouse_genomes_project 17 720846 781602 - MGP_AJ_P0045389 Nox3 protein_coding protein_coding MGP_AJ_T0048298.1 MGP_AJ_G0023895.1 mouse_genomes_project 17 56867704 56873930 - MGP_AJ_P0048298 Nrtn protein_coding protein_coding MGP_AJ_T0006909.1 MGP_AJ_G0005684.1 mouse_genomes_project 17 15048189 15053765 - Gm26873 lincRNA lincRNA MGP_AJ_T0013260.1 MGP_AJ_G0011355.1 mouse_genomes_project 17 37323584 37324446 + processed_pseudogene processed_pseudogene MGP_AJ_T0046715.1 MGP_AJ_G0023447.1 mouse_genomes_project 17 30241317 30259256 - MGP_AJ_P0046715 Wdr4 protein_coding protein_coding MGP_AJ_T0046716.1 MGP_AJ_G0023447.1 mouse_genomes_project 17 30241318 30259269 - MGP_AJ_P0046716 Wdr4 protein_coding nonsense_mediated_decay MGP_AJ_T0046717.1 MGP_AJ_G0023447.1 mouse_genomes_project 17 30241318 30259752 - MGP_AJ_P0046717 Wdr4 protein_coding protein_coding MGP_AJ_T0046718.1 MGP_AJ_G0023447.1 mouse_genomes_project 17 30241320 30259269 - MGP_AJ_P0046718 Wdr4 protein_coding nonsense_mediated_decay MGP_AJ_T0046719.1 MGP_AJ_G0023447.1 mouse_genomes_project 17 30243121 30248330 - Wdr4 protein_coding retained_intron MGP_AJ_T0046720.1 MGP_AJ_G0023447.1 mouse_genomes_project 17 30246444 30250616 - Wdr4 protein_coding retained_intron MGP_AJ_T0046721.1 MGP_AJ_G0023447.1 mouse_genomes_project 17 30250085 30256913 - Wdr4 protein_coding retained_intron MGP_AJ_T0046722.1 MGP_AJ_G0023447.1 mouse_genomes_project 17 30250573 30267014 - MGP_AJ_P0046722 Wdr4 protein_coding protein_coding MGP_AJ_T0046723.1 MGP_AJ_G0023447.1 mouse_genomes_project 17 30250583 30259279 - MGP_AJ_P0046723 Wdr4 protein_coding protein_coding MGP_AJ_T0046724.1 MGP_AJ_G0023447.1 mouse_genomes_project 17 30259443 30267074 - Wdr4 protein_coding processed_transcript MGP_AJ_T0046660.1 MGP_AJ_G0023430.1 mouse_genomes_project 17 28266719 28294645 - MGP_AJ_P0046660 Ccdc167 protein_coding nonsense_mediated_decay MGP_AJ_T0046661.1 MGP_AJ_G0023430.1 mouse_genomes_project 17 28275019 28294621 - MGP_AJ_P0046661 Ccdc167 protein_coding nonsense_mediated_decay MGP_AJ_T0046662.1 MGP_AJ_G0023430.1 mouse_genomes_project 17 28275765 28294645 - MGP_AJ_P0046662 Ccdc167 protein_coding protein_coding MGP_AJ_T0046663.1 MGP_AJ_G0023430.1 mouse_genomes_project 17 28277443 28294599 - MGP_AJ_P0046663 Ccdc167 protein_coding nonsense_mediated_decay MGP_AJ_T0046664.1 MGP_AJ_G0023430.1 mouse_genomes_project 17 28280776 28294648 - MGP_AJ_P0046664 Ccdc167 protein_coding protein_coding MGP_AJ_T0046665.1 MGP_AJ_G0023430.1 mouse_genomes_project 17 28290417 28294600 - Ccdc167 protein_coding processed_transcript MGP_AJ_T0013255.1 MGP_AJ_G0011350.1 mouse_genomes_project 17 37127706 37128364 - processed_pseudogene processed_pseudogene MGP_AJ_T0047413.1 MGP_AJ_G0023598.1 mouse_genomes_project 17 34605497 34606944 + MGP_AJ_P0047413 Psors1c2 protein_coding protein_coding MGP_AJ_T0045681.1 MGP_AJ_G0023157.1 mouse_genomes_project 17 15927909 15962710 - MGP_AJ_P0045681 Vmn2r94 protein_coding protein_coding MGP_AJ_T0099676.1 MGP_AJ_G0037642.1 mouse_genomes_project 17 88861535 88861630 - Gm22542 snRNA snRNA MGP_AJ_T0047734.1 MGP_AJ_G0023720.1 mouse_genomes_project 17 40725986 40731063 - MGP_AJ_P0047734 9130008F23Rik protein_coding protein_coding MGP_AJ_T0046573.1 MGP_AJ_G0023411.1 mouse_genomes_project 17 27443781 27449201 - MGP_AJ_P0046573 Pxt1 protein_coding protein_coding MGP_AJ_T0047690.1 MGP_AJ_G0023686.1 mouse_genomes_project 17 37056523 37057645 + MGP_AJ_P0047690 Olfr124 protein_coding protein_coding MGP_AJ_T0047735.1 MGP_AJ_G0023721.1 mouse_genomes_project 17 40756745 40767052 - MGP_AJ_P0047735 Glyatl3 protein_coding protein_coding MGP_AJ_T0013273.1 MGP_AJ_G0011368.1 mouse_genomes_project 17 53746746 53747130 + processed_pseudogene processed_pseudogene MGP_AJ_T0003705.1 MGP_AJ_G0003343.1 mouse_genomes_project 17 5435918 5439065 - antisense antisense MGP_AJ_T0003720.1 MGP_AJ_G0003349.1 mouse_genomes_project 17 11343580 11344543 - Gm16049 antisense antisense MGP_AJ_T0013283.1 MGP_AJ_G0011378.1 mouse_genomes_project 17 63456780 63457271 - processed_pseudogene processed_pseudogene MGP_AJ_T0102395.1 MGP_AJ_G0040137.1 mouse_genomes_project 17 24681979 24682678 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0102396.1 MGP_AJ_G0040138.1 mouse_genomes_project 17 31752855 31759826 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0045832.1 MGP_AJ_G0023234.1 mouse_genomes_project 17 22104424 22106808 - MGP_AJ_P0045832 Prss33 protein_coding protein_coding MGP_AJ_T0045833.1 MGP_AJ_G0023234.1 mouse_genomes_project 17 22104804 22106804 - MGP_AJ_P0045833 Prss33 protein_coding nonsense_mediated_decay MGP_AJ_T0045834.1 MGP_AJ_G0023234.1 mouse_genomes_project 17 22105732 22107121 - Prss33 protein_coding retained_intron MGP_AJ_T0046642.1 MGP_AJ_G0023427.1 mouse_genomes_project 17 28189439 28216711 + MGP_AJ_P0046642 Rnf8 protein_coding protein_coding MGP_AJ_T0046643.1 MGP_AJ_G0023427.1 mouse_genomes_project 17 28189471 28201717 + MGP_AJ_P0046643 Rnf8 protein_coding protein_coding MGP_AJ_T0046644.1 MGP_AJ_G0023427.1 mouse_genomes_project 17 28189503 28216634 + MGP_AJ_P0046644 Rnf8 protein_coding nonsense_mediated_decay MGP_AJ_T0046646.1 MGP_AJ_G0023427.1 mouse_genomes_project 17 28189539 28194209 + Rnf8 protein_coding processed_transcript MGP_AJ_T0046647.1 MGP_AJ_G0023427.1 mouse_genomes_project 17 28190786 28201750 + MGP_AJ_P0046647 Rnf8 protein_coding protein_coding MGP_AJ_T0046648.1 MGP_AJ_G0023427.1 mouse_genomes_project 17 28203312 28210742 + Rnf8 protein_coding retained_intron MGP_AJ_T0046649.1 MGP_AJ_G0023427.1 mouse_genomes_project 17 28206214 28216582 + Rnf8 protein_coding retained_intron MGP_AJ_T0046650.1 MGP_AJ_G0023427.1 mouse_genomes_project 17 28209268 28216603 + Rnf8 protein_coding retained_intron MGP_AJ_T0045971.1 MGP_AJ_G0023273.1 mouse_genomes_project 17 23049573 23054288 - MGP_AJ_P0045971 Syngr3 protein_coding protein_coding MGP_AJ_T0045972.1 MGP_AJ_G0023273.1 mouse_genomes_project 17 23051116 23052412 - Syngr3 protein_coding processed_transcript MGP_AJ_T0013230.1 MGP_AJ_G0011325.1 mouse_genomes_project 17 30711928 30712470 + processed_pseudogene processed_pseudogene MGP_AJ_T0013280.1 MGP_AJ_G0011375.1 mouse_genomes_project 17 54503490 54503631 + processed_pseudogene processed_pseudogene MGP_AJ_T0048680.1 MGP_AJ_G0024036.1 mouse_genomes_project 17 84572263 84575395 - MGP_AJ_P0048680 Zfp36l2 protein_coding protein_coding MGP_AJ_T0045693.1 MGP_AJ_G0023168.1 mouse_genomes_project 17 17913861 17932341 - MGP_AJ_P0045693 Vmn2r104 protein_coding protein_coding MGP_AJ_T0046678.1 MGP_AJ_G0023434.1 mouse_genomes_project 17 29209800 29234081 - MGP_AJ_P0046678 protein_coding protein_coding MGP_AJ_T0046679.1 MGP_AJ_G0023434.1 mouse_genomes_project 17 29212204 29234189 - MGP_AJ_P0046679 protein_coding protein_coding MGP_AJ_T0045526.1 MGP_AJ_G0023113.1 mouse_genomes_project 17 9870977 9912846 + MGP_AJ_P0045526 Plg protein_coding protein_coding MGP_AJ_T0048102.1 MGP_AJ_G0023828.1 mouse_genomes_project 17 48292615 48304489 + MGP_AJ_P0048102 B430306N03Rik protein_coding protein_coding MGP_AJ_T0048103.1 MGP_AJ_G0023828.1 mouse_genomes_project 17 48292639 48302990 + MGP_AJ_P0048103 B430306N03Rik protein_coding nonsense_mediated_decay MGP_AJ_T0048104.1 MGP_AJ_G0023828.1 mouse_genomes_project 17 48292883 48301664 + MGP_AJ_P0048104 B430306N03Rik protein_coding nonsense_mediated_decay MGP_AJ_T0048105.1 MGP_AJ_G0023828.1 mouse_genomes_project 17 48292898 48295719 + B430306N03Rik protein_coding retained_intron MGP_AJ_T0011429.1 MGP_AJ_G0009551.1 mouse_genomes_project 17 46936360 46936654 - Gm23657 misc_RNA misc_RNA MGP_AJ_T0003728.1 MGP_AJ_G0003356.1 mouse_genomes_project 17 25539848 25541814 - Itpr3os antisense antisense MGP_AJ_T0000993.1 MGP_AJ_G0000924.1 mouse_genomes_project 17 54304244 54304570 + TEC TEC MGP_AJ_T0047090.1 MGP_AJ_G0023532.1 mouse_genomes_project 17 33166961 33182025 + MGP_AJ_P0047090 H2-Eb2 protein_coding protein_coding MGP_AJ_T0048243.1 MGP_AJ_G0023880.1 mouse_genomes_project 17 56376120 56388794 - MGP_AJ_P0048243 Plin3 protein_coding protein_coding MGP_AJ_T0045709.1 MGP_AJ_G0023184.1 mouse_genomes_project 17 18798142 18799078 - MGP_AJ_P0045709 Vmn1r231 protein_coding protein_coding MGP_AJ_T0048309.1 MGP_AJ_G0023903.1 mouse_genomes_project 17 57111585 57117693 + MGP_AJ_P0048309 Clpp protein_coding protein_coding MGP_AJ_T0047539.1 MGP_AJ_G0023619.1 mouse_genomes_project 17 35065838 35074447 - MGP_AJ_P0047539 Prr3 protein_coding protein_coding MGP_AJ_T0047540.1 MGP_AJ_G0023619.1 mouse_genomes_project 17 35068289 35073861 - MGP_AJ_P0047540 Prr3 protein_coding protein_coding MGP_AJ_T0047541.1 MGP_AJ_G0023619.1 mouse_genomes_project 17 35072093 35073783 - MGP_AJ_P0047541 Prr3 protein_coding protein_coding MGP_AJ_T0047542.1 MGP_AJ_G0023619.1 mouse_genomes_project 17 35072329 35074143 - MGP_AJ_P0047542 Prr3 protein_coding protein_coding MGP_AJ_T0047543.1 MGP_AJ_G0023619.1 mouse_genomes_project 17 35072497 35074143 - MGP_AJ_P0047543 Prr3 protein_coding protein_coding MGP_AJ_T0047544.1 MGP_AJ_G0023619.1 mouse_genomes_project 17 35072752 35074014 - MGP_AJ_P0047544 Prr3 protein_coding protein_coding MGP_AJ_T0047545.1 MGP_AJ_G0023619.1 mouse_genomes_project 17 35072863 35073634 - Prr3 protein_coding retained_intron MGP_AJ_T0045791.1 MGP_AJ_G0023220.1 mouse_genomes_project 17 21925449 21933341 + MGP_AJ_P0045791 Ccdc64b protein_coding protein_coding MGP_AJ_T0045463.1 MGP_AJ_G0023098.1 mouse_genomes_project 17 5732896 5757403 + MGP_AJ_P0045463 Ccr6 protein_coding protein_coding MGP_AJ_T0045464.1 MGP_AJ_G0023098.1 mouse_genomes_project 17 5739313 5757403 + MGP_AJ_P0045464 Ccr6 protein_coding protein_coding MGP_AJ_T0045465.1 MGP_AJ_G0023098.1 mouse_genomes_project 17 5740595 5757403 + MGP_AJ_P0045465 Ccr6 protein_coding protein_coding MGP_AJ_T0045466.1 MGP_AJ_G0023098.1 mouse_genomes_project 17 5740595 5757403 + MGP_AJ_P0045466 Ccr6 protein_coding protein_coding MGP_AJ_T0045467.1 MGP_AJ_G0023098.1 mouse_genomes_project 17 5740595 5757403 + MGP_AJ_P0045467 Ccr6 protein_coding protein_coding MGP_AJ_T0045468.1 MGP_AJ_G0023098.1 mouse_genomes_project 17 5740595 5757403 + MGP_AJ_P0045468 Ccr6 protein_coding protein_coding MGP_AJ_T0046085.1 MGP_AJ_G0023298.1 mouse_genomes_project 17 23489375 23493882 + MGP_AJ_P0046085 Ptx4 protein_coding protein_coding MGP_AJ_T0047908.1 MGP_AJ_G0023767.1 mouse_genomes_project 17 46164085 46167237 + MGP_AJ_P0047908 Lrrc73 protein_coding protein_coding MGP_AJ_T0003719.1 MGP_AJ_G0003348.1 mouse_genomes_project 17 11343544 11344160 - Gm16052 antisense antisense MGP_AJ_T0047057.1 MGP_AJ_G0023523.1 mouse_genomes_project 17 33023908 33025426 - Psmb9 protein_coding retained_intron MGP_AJ_T0047058.1 MGP_AJ_G0023523.1 mouse_genomes_project 17 33023911 33029220 - Psmb9 protein_coding retained_intron MGP_AJ_T0047059.1 MGP_AJ_G0023523.1 mouse_genomes_project 17 33023914 33029176 - MGP_AJ_P0047059 Psmb9 protein_coding protein_coding MGP_AJ_T0047060.1 MGP_AJ_G0023523.1 mouse_genomes_project 17 33025906 33029205 - Psmb9 protein_coding retained_intron MGP_AJ_T0047061.1 MGP_AJ_G0023523.1 mouse_genomes_project 17 33026158 33029086 - MGP_AJ_P0047061 Psmb9 protein_coding protein_coding MGP_AJ_T0046933.1 MGP_AJ_G0023499.1 mouse_genomes_project 17 32623033 32629639 + MGP_AJ_P0046933 Cd320 protein_coding protein_coding MGP_AJ_T0046934.1 MGP_AJ_G0023499.1 mouse_genomes_project 17 32623045 32626260 + Cd320 protein_coding retained_intron MGP_AJ_T0046935.1 MGP_AJ_G0023499.1 mouse_genomes_project 17 32623368 32628616 + MGP_AJ_P0046935 Cd320 protein_coding protein_coding MGP_AJ_T0100921.1 MGP_AJ_G0038887.1 mouse_genomes_project 17 33924951 33925017 - Snord52 snoRNA snoRNA MGP_AJ_T0006961.1 MGP_AJ_G0005728.1 mouse_genomes_project 17 49109177 49110429 - 1700008K24Rik lincRNA lincRNA MGP_AJ_T0006962.1 MGP_AJ_G0005728.1 mouse_genomes_project 17 49109177 49110442 - 1700008K24Rik lincRNA lincRNA MGP_AJ_T0006963.1 MGP_AJ_G0005728.1 mouse_genomes_project 17 49109179 49110350 - 1700008K24Rik lincRNA lincRNA MGP_AJ_T0006964.1 MGP_AJ_G0005728.1 mouse_genomes_project 17 49109179 49110407 - 1700008K24Rik lincRNA lincRNA MGP_AJ_T0006965.1 MGP_AJ_G0005728.1 mouse_genomes_project 17 49109287 49110449 - 1700008K24Rik lincRNA lincRNA MGP_AJ_T0045923.1 MGP_AJ_G0023260.1 mouse_genomes_project 17 22801769 22813361 - MGP_AJ_P0045923 E4f1 protein_coding unknown_likely_coding MGP_AJ_T0045924.1 MGP_AJ_G0023260.1 mouse_genomes_project 17 22801789 22813396 - MGP_AJ_P0045924 E4f1 protein_coding protein_coding MGP_AJ_T0046188.1 MGP_AJ_G0023325.1 mouse_genomes_project 17 24152656 24158354 - MGP_AJ_P0046188 Haghl protein_coding protein_coding MGP_AJ_T0046189.1 MGP_AJ_G0023325.1 mouse_genomes_project 17 24155603 24158149 - Haghl protein_coding retained_intron MGP_AJ_T0046190.1 MGP_AJ_G0023325.1 mouse_genomes_project 17 24155615 24158346 - Haghl protein_coding retained_intron MGP_AJ_T0046191.1 MGP_AJ_G0023325.1 mouse_genomes_project 17 24155627 24158381 - MGP_AJ_P0046191 Haghl protein_coding protein_coding MGP_AJ_T0046192.1 MGP_AJ_G0023325.1 mouse_genomes_project 17 24156353 24158381 - Haghl protein_coding retained_intron MGP_AJ_T0046193.1 MGP_AJ_G0023325.1 mouse_genomes_project 17 24156642 24158380 - Haghl protein_coding retained_intron MGP_AJ_T0046194.1 MGP_AJ_G0023325.1 mouse_genomes_project 17 24156946 24158119 - Haghl protein_coding retained_intron MGP_AJ_T0046195.1 MGP_AJ_G0023325.1 mouse_genomes_project 17 24157129 24158357 - MGP_AJ_P0046195 Haghl protein_coding protein_coding MGP_AJ_T0048595.1 MGP_AJ_G0023997.1 mouse_genomes_project 17 79089548 79169730 - MGP_AJ_P0048595 Heatr5b protein_coding protein_coding MGP_AJ_T0006952.1 MGP_AJ_G0005720.1 mouse_genomes_project 17 35397245 35401867 + Gm20546 lincRNA lincRNA MGP_AJ_T0098620.1 MGP_AJ_G0036604.1 mouse_genomes_project 17 47802938 47803057 + n-R5s28 rRNA rRNA MGP_AJ_T0100910.1 MGP_AJ_G0038876.1 mouse_genomes_project 17 101055 101183 - Gm22598 snoRNA snoRNA MGP_AJ_T0046097.1 MGP_AJ_G0023301.1 mouse_genomes_project 17 23553331 23556445 + MGP_AJ_P0046097 BC003965 protein_coding protein_coding MGP_AJ_T0013226.1 MGP_AJ_G0011321.1 mouse_genomes_project 17 25978992 25979261 + processed_pseudogene processed_pseudogene MGP_AJ_T0048783.1 MGP_AJ_G0024074.1 mouse_genomes_project 17 89510659 89738147 - MGP_AJ_P0048783 Fshr protein_coding protein_coding MGP_AJ_T0046894.1 MGP_AJ_G0023493.1 mouse_genomes_project 17 32448263 32493179 - MGP_AJ_P0046894 March2 protein_coding nonsense_mediated_decay MGP_AJ_T0046895.1 MGP_AJ_G0023493.1 mouse_genomes_project 17 32448283 32493154 - MGP_AJ_P0046895 March2 protein_coding protein_coding MGP_AJ_T0046896.1 MGP_AJ_G0023493.1 mouse_genomes_project 17 32448384 32493154 - MGP_AJ_P0046896 March2 protein_coding protein_coding MGP_AJ_T0046897.1 MGP_AJ_G0023493.1 mouse_genomes_project 17 32454067 32493162 - MGP_AJ_P0046897 March2 protein_coding protein_coding MGP_AJ_T0046898.1 MGP_AJ_G0023493.1 mouse_genomes_project 17 32454067 32493149 - MGP_AJ_P0046898 March2 protein_coding protein_coding MGP_AJ_T0046899.1 MGP_AJ_G0023493.1 mouse_genomes_project 17 32454391 32477605 - MGP_AJ_P0046899 March2 protein_coding protein_coding MGP_AJ_T0046900.1 MGP_AJ_G0023493.1 mouse_genomes_project 17 32456773 32493166 - MGP_AJ_P0046900 March2 protein_coding protein_coding MGP_AJ_T0046901.1 MGP_AJ_G0023493.1 mouse_genomes_project 17 32458582 32493100 - MGP_AJ_P0046901 March2 protein_coding protein_coding MGP_AJ_T0046902.1 MGP_AJ_G0023493.1 mouse_genomes_project 17 32477542 32487862 - MGP_AJ_P0046902 March2 protein_coding protein_coding MGP_AJ_T0045747.1 MGP_AJ_G0023206.1 mouse_genomes_project 17 20002688 20035194 + MGP_AJ_P0045747 Zfp943 protein_coding protein_coding MGP_AJ_T0045748.1 MGP_AJ_G0023206.1 mouse_genomes_project 17 20002695 20032872 + MGP_AJ_P0045748 Zfp943 protein_coding protein_coding MGP_AJ_T0045749.1 MGP_AJ_G0023206.1 mouse_genomes_project 17 20002722 20142730 + MGP_AJ_P0045749 Zfp943 protein_coding nonsense_mediated_decay MGP_AJ_T0045750.1 MGP_AJ_G0023206.1 mouse_genomes_project 17 20047736 20053780 + Zfp943 protein_coding processed_transcript MGP_AJ_T0045401.1 MGP_AJ_G0023078.1 mouse_genomes_project 17 3027337 3119198 + MGP_AJ_P0045401 Synj2 protein_coding protein_coding MGP_AJ_T0045402.1 MGP_AJ_G0023078.1 mouse_genomes_project 17 3027337 3124961 + MGP_AJ_P0045402 Synj2 protein_coding protein_coding MGP_AJ_T0045403.1 MGP_AJ_G0023078.1 mouse_genomes_project 17 3027418 3125797 + MGP_AJ_P0045403 Synj2 protein_coding nonsense_mediated_decay MGP_AJ_T0045404.1 MGP_AJ_G0023078.1 mouse_genomes_project 17 3027443 3124961 + MGP_AJ_P0045404 Synj2 protein_coding protein_coding MGP_AJ_T0045405.1 MGP_AJ_G0023078.1 mouse_genomes_project 17 3061902 3112689 + MGP_AJ_P0045405 Synj2 protein_coding protein_coding MGP_AJ_T0045406.1 MGP_AJ_G0023078.1 mouse_genomes_project 17 3061957 3130696 + MGP_AJ_P0045406 Synj2 protein_coding protein_coding MGP_AJ_T0045407.1 MGP_AJ_G0023078.1 mouse_genomes_project 17 3062056 3124961 + MGP_AJ_P0045407 Synj2 protein_coding protein_coding MGP_AJ_T0045408.1 MGP_AJ_G0023078.1 mouse_genomes_project 17 3074302 3125748 + MGP_AJ_P0045408 Synj2 protein_coding protein_coding MGP_AJ_T0045409.1 MGP_AJ_G0023078.1 mouse_genomes_project 17 3076379 3130696 + MGP_AJ_P0045409 Synj2 protein_coding protein_coding MGP_AJ_T0045410.1 MGP_AJ_G0023078.1 mouse_genomes_project 17 3082103 3124734 + MGP_AJ_P0045410 Synj2 protein_coding protein_coding MGP_AJ_T0045411.1 MGP_AJ_G0023078.1 mouse_genomes_project 17 3082933 3106220 + MGP_AJ_P0045411 Synj2 protein_coding protein_coding MGP_AJ_T0045412.1 MGP_AJ_G0023078.1 mouse_genomes_project 17 3093708 3119334 + MGP_AJ_P0045412 Synj2 protein_coding protein_coding MGP_AJ_T0045413.1 MGP_AJ_G0023078.1 mouse_genomes_project 17 3093725 3124812 + MGP_AJ_P0045413 Synj2 protein_coding protein_coding MGP_AJ_T0045414.1 MGP_AJ_G0023078.1 mouse_genomes_project 17 3093740 3096619 + Synj2 protein_coding processed_transcript MGP_AJ_T0045415.1 MGP_AJ_G0023078.1 mouse_genomes_project 17 3099287 3124779 + MGP_AJ_P0045415 Synj2 protein_coding protein_coding MGP_AJ_T0045416.1 MGP_AJ_G0023078.1 mouse_genomes_project 17 3111474 3123868 + MGP_AJ_P0045416 Synj2 protein_coding protein_coding MGP_AJ_T0046391.1 MGP_AJ_G0023371.1 mouse_genomes_project 17 25404645 25470629 + MGP_AJ_P0046391 Ggnbp1 protein_coding protein_coding MGP_AJ_T0046392.1 MGP_AJ_G0023371.1 mouse_genomes_project 17 25448909 25457552 + Ggnbp1 protein_coding retained_intron MGP_AJ_T0046393.1 MGP_AJ_G0023371.1 mouse_genomes_project 17 25448920 25470629 + MGP_AJ_P0046393 Ggnbp1 protein_coding protein_coding MGP_AJ_T0046394.1 MGP_AJ_G0023371.1 mouse_genomes_project 17 25448936 25453405 + Ggnbp1 protein_coding processed_transcript MGP_AJ_T0046399.1 MGP_AJ_G0023371.1 mouse_genomes_project 17 25460138 25470629 + MGP_AJ_P0046399 Ggnbp1 protein_coding protein_coding MGP_AJ_T0046400.1 MGP_AJ_G0023371.1 mouse_genomes_project 17 25461256 25469058 + Ggnbp1 protein_coding retained_intron MGP_AJ_T0047709.1 MGP_AJ_G0023700.1 mouse_genomes_project 17 37555855 37556795 - MGP_AJ_P0047709 Olfr137 protein_coding protein_coding MGP_AJ_T0045903.1 MGP_AJ_G0023255.1 mouse_genomes_project 17 22614458 22704648 - MGP_AJ_P0045903 Abca17 protein_coding protein_coding MGP_AJ_T0045904.1 MGP_AJ_G0023255.1 mouse_genomes_project 17 22614478 22700887 - MGP_AJ_P0045904 Abca17 protein_coding protein_coding MGP_AJ_T0013299.1 MGP_AJ_G0011394.1 mouse_genomes_project 17 86007891 86008231 + processed_pseudogene processed_pseudogene MGP_AJ_T0098617.1 MGP_AJ_G0036601.1 mouse_genomes_project 17 31600142 31600253 - Gm25555 rRNA rRNA MGP_AJ_T0047745.1 MGP_AJ_G0023727.1 mouse_genomes_project 17 42582377 42619018 - MGP_AJ_P0047745 Adgrf2 protein_coding protein_coding MGP_AJ_T0013227.1 MGP_AJ_G0011322.1 mouse_genomes_project 17 25986513 25986867 + processed_pseudogene processed_pseudogene MGP_AJ_T0102447.1 MGP_AJ_G0040189.1 mouse_genomes_project 17 55906061 55906709 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0048376.1 MGP_AJ_G0023933.1 mouse_genomes_project 17 64950533 64954084 - MGP_AJ_P0048376 4930583I09Rik protein_coding protein_coding MGP_AJ_T0013211.1 MGP_AJ_G0011306.1 mouse_genomes_project 17 8404677 8404897 + processed_pseudogene processed_pseudogene MGP_AJ_T0048397.1 MGP_AJ_G0023940.1 mouse_genomes_project 17 66047945 66076790 - MGP_AJ_P0048397 Twsg1 protein_coding protein_coding MGP_AJ_T0048162.1 MGP_AJ_G0023844.1 mouse_genomes_project 17 51760024 51858719 - MGP_AJ_P0048162 Satb1 protein_coding protein_coding MGP_AJ_T0048163.1 MGP_AJ_G0023844.1 mouse_genomes_project 17 51760025 51852655 - MGP_AJ_P0048163 Satb1 protein_coding protein_coding MGP_AJ_T0048164.1 MGP_AJ_G0023844.1 mouse_genomes_project 17 51762731 51859337 - MGP_AJ_P0048164 Satb1 protein_coding protein_coding MGP_AJ_T0048165.1 MGP_AJ_G0023844.1 mouse_genomes_project 17 51763290 51836967 - MGP_AJ_P0048165 Satb1 protein_coding protein_coding MGP_AJ_T0048166.1 MGP_AJ_G0023844.1 mouse_genomes_project 17 51763293 51852633 - MGP_AJ_P0048166 Satb1 protein_coding protein_coding MGP_AJ_T0048167.1 MGP_AJ_G0023844.1 mouse_genomes_project 17 51763309 51841052 - MGP_AJ_P0048167 Satb1 protein_coding protein_coding MGP_AJ_T0048168.1 MGP_AJ_G0023844.1 mouse_genomes_project 17 51763314 51838728 - MGP_AJ_P0048168 Satb1 protein_coding protein_coding MGP_AJ_T0048169.1 MGP_AJ_G0023844.1 mouse_genomes_project 17 51763826 51766105 - Satb1 protein_coding retained_intron MGP_AJ_T0048170.1 MGP_AJ_G0023844.1 mouse_genomes_project 17 51828377 51835180 - Satb1 protein_coding processed_transcript MGP_AJ_T0048171.1 MGP_AJ_G0023844.1 mouse_genomes_project 17 51830413 51847160 - MGP_AJ_P0048171 Satb1 protein_coding protein_coding MGP_AJ_T0048172.1 MGP_AJ_G0023844.1 mouse_genomes_project 17 51831410 51858066 - MGP_AJ_P0048172 Satb1 protein_coding protein_coding MGP_AJ_T0048173.1 MGP_AJ_G0023844.1 mouse_genomes_project 17 51833127 51836967 - Satb1 protein_coding retained_intron MGP_AJ_T0048174.1 MGP_AJ_G0023844.1 mouse_genomes_project 17 51835236 51852655 - MGP_AJ_P0048174 Satb1 protein_coding protein_coding MGP_AJ_T0048175.1 MGP_AJ_G0023844.1 mouse_genomes_project 17 51850706 51855564 - Satb1 protein_coding retained_intron MGP_AJ_T0045721.1 MGP_AJ_G0023190.1 mouse_genomes_project 17 19200036 19201026 + MGP_AJ_P0045721 Vmn1r234 protein_coding protein_coding MGP_AJ_T0047724.1 MGP_AJ_G0023714.1 mouse_genomes_project 17 40443279 40461329 + MGP_AJ_P0047724 Gm44501 protein_coding protein_coding MGP_AJ_T0046118.1 MGP_AJ_G0023307.1 mouse_genomes_project 17 23633731 23647078 - MGP_AJ_P0046118 Ube2i protein_coding protein_coding MGP_AJ_T0046119.1 MGP_AJ_G0023307.1 mouse_genomes_project 17 23633736 23645223 - MGP_AJ_P0046119 Ube2i protein_coding protein_coding MGP_AJ_T0046120.1 MGP_AJ_G0023307.1 mouse_genomes_project 17 23633990 23647078 - MGP_AJ_P0046120 Ube2i protein_coding protein_coding MGP_AJ_T0046121.1 MGP_AJ_G0023307.1 mouse_genomes_project 17 23633994 23645754 - MGP_AJ_P0046121 Ube2i protein_coding protein_coding MGP_AJ_T0046122.1 MGP_AJ_G0023307.1 mouse_genomes_project 17 23633994 23637693 - MGP_AJ_P0046122 Ube2i protein_coding protein_coding MGP_AJ_T0046123.1 MGP_AJ_G0023307.1 mouse_genomes_project 17 23634121 23645374 - MGP_AJ_P0046123 Ube2i protein_coding protein_coding MGP_AJ_T0046124.1 MGP_AJ_G0023307.1 mouse_genomes_project 17 23634208 23647407 - MGP_AJ_P0046124 Ube2i protein_coding protein_coding MGP_AJ_T0046125.1 MGP_AJ_G0023307.1 mouse_genomes_project 17 23636292 23637159 - Ube2i protein_coding retained_intron MGP_AJ_T0046126.1 MGP_AJ_G0023307.1 mouse_genomes_project 17 23636962 23645430 - MGP_AJ_P0046126 Ube2i protein_coding protein_coding MGP_AJ_T0046127.1 MGP_AJ_G0023307.1 mouse_genomes_project 17 23638387 23645707 - MGP_AJ_P0046127 Ube2i protein_coding protein_coding MGP_AJ_T0046128.1 MGP_AJ_G0023307.1 mouse_genomes_project 17 23640229 23647070 - MGP_AJ_P0046128 Ube2i protein_coding protein_coding MGP_AJ_T0046129.1 MGP_AJ_G0023307.1 mouse_genomes_project 17 23641074 23645440 - MGP_AJ_P0046129 Ube2i protein_coding protein_coding MGP_AJ_T0046130.1 MGP_AJ_G0023307.1 mouse_genomes_project 17 23641223 23644995 - MGP_AJ_P0046130 Ube2i protein_coding protein_coding MGP_AJ_T0046131.1 MGP_AJ_G0023307.1 mouse_genomes_project 17 23644502 23645099 - Ube2i protein_coding processed_transcript MGP_AJ_T0046636.1 MGP_AJ_G0023423.1 mouse_genomes_project 17 28053597 28058549 + MGP_AJ_P0046636 Pim1 protein_coding unknown_likely_coding MGP_AJ_T0045440.1 MGP_AJ_G0023089.1 mouse_genomes_project 17 4401381 4424286 + MGP_AJ_P0045440 protein_coding protein_coding MGP_AJ_T0045441.1 MGP_AJ_G0023089.1 mouse_genomes_project 17 4401428 4440824 + MGP_AJ_P0045441 protein_coding protein_coding MGP_AJ_T0017535.1 MGP_AJ_G0015309.1 mouse_genomes_project 17 5793333 5811419 - 4930506C21Rik processed_transcript processed_transcript MGP_AJ_T0017536.1 MGP_AJ_G0015309.1 mouse_genomes_project 17 5796926 5798701 - 4930506C21Rik processed_transcript processed_transcript MGP_AJ_T0017537.1 MGP_AJ_G0015309.1 mouse_genomes_project 17 5797952 5811447 - 4930506C21Rik processed_transcript retained_intron MGP_AJ_T0048751.1 MGP_AJ_G0024064.1 mouse_genomes_project 17 88166743 88218946 + MGP_AJ_P0048751 Msh2 protein_coding protein_coding MGP_AJ_T0048752.1 MGP_AJ_G0024064.1 mouse_genomes_project 17 88166953 88174008 + Msh2 protein_coding retained_intron MGP_AJ_T0048753.1 MGP_AJ_G0024064.1 mouse_genomes_project 17 88166974 88205264 + Msh2 protein_coding retained_intron MGP_AJ_T0048754.1 MGP_AJ_G0024064.1 mouse_genomes_project 17 88167022 88179617 + MGP_AJ_P0048754 Msh2 protein_coding protein_coding MGP_AJ_T0048755.1 MGP_AJ_G0024064.1 mouse_genomes_project 17 88182941 88192358 + Msh2 protein_coding retained_intron MGP_AJ_T0048756.1 MGP_AJ_G0024064.1 mouse_genomes_project 17 88192195 88212905 + MGP_AJ_P0048756 Msh2 protein_coding nonsense_mediated_decay MGP_AJ_T0099673.1 MGP_AJ_G0037639.1 mouse_genomes_project 17 84780481 84780588 + Gm24722 snRNA snRNA MGP_AJ_T0048644.1 MGP_AJ_G0024019.1 mouse_genomes_project 17 80678914 80758321 + MGP_AJ_P0048644 Arhgef33 protein_coding unknown_likely_coding MGP_AJ_T0048645.1 MGP_AJ_G0024019.1 mouse_genomes_project 17 80679052 80762841 + MGP_AJ_P0048645 Arhgef33 protein_coding protein_coding MGP_AJ_T0013276.1 MGP_AJ_G0011371.1 mouse_genomes_project 17 53969295 53969641 - processed_pseudogene processed_pseudogene MGP_AJ_T0100911.1 MGP_AJ_G0038877.1 mouse_genomes_project 17 101055 101176 - Gm25909 snoRNA snoRNA MGP_AJ_T0013228.1 MGP_AJ_G0011323.1 mouse_genomes_project 17 25986513 25986870 + processed_pseudogene processed_pseudogene MGP_AJ_T0100917.1 MGP_AJ_G0038883.1 mouse_genomes_project 17 23084678 23084806 - Snora78 snoRNA snoRNA MGP_AJ_T0046836.1 MGP_AJ_G0023475.1 mouse_genomes_project 17 31768126 31783123 + MGP_AJ_P0046836 Zfp472 protein_coding protein_coding MGP_AJ_T0047177.1 MGP_AJ_G0023550.1 mouse_genomes_project 17 33765240 33766082 - protein_coding processed_transcript MGP_AJ_T0046138.1 MGP_AJ_G0023313.1 mouse_genomes_project 17 23740630 23745778 + MGP_AJ_P0046138 Tpsg1 protein_coding protein_coding MGP_AJ_T0046139.1 MGP_AJ_G0023313.1 mouse_genomes_project 17 23740646 23745487 + MGP_AJ_P0046139 Tpsg1 protein_coding protein_coding MGP_AJ_T0046140.1 MGP_AJ_G0023313.1 mouse_genomes_project 17 23741886 23745778 + MGP_AJ_P0046140 Tpsg1 protein_coding protein_coding MGP_AJ_T0046141.1 MGP_AJ_G0023313.1 mouse_genomes_project 17 23741917 23745780 + MGP_AJ_P0046141 Tpsg1 protein_coding protein_coding MGP_AJ_T0046142.1 MGP_AJ_G0023313.1 mouse_genomes_project 17 23744346 23745723 + MGP_AJ_P0046142 Tpsg1 protein_coding protein_coding MGP_AJ_T0047727.1 MGP_AJ_G0023717.1 mouse_genomes_project 17 40593413 40598076 + MGP_AJ_P0047727 Esp1 protein_coding protein_coding MGP_AJ_T0046214.1 MGP_AJ_G0023333.1 mouse_genomes_project 17 24207367 24214664 - MGP_AJ_P0046214 Gm20683 protein_coding nonsense_mediated_decay MGP_AJ_T0048637.1 MGP_AJ_G0024015.1 mouse_genomes_project 17 80558210 80568506 + MGP_AJ_P0048637 Ttc39d protein_coding protein_coding MGP_AJ_T0048638.1 MGP_AJ_G0024015.1 mouse_genomes_project 17 80566483 80568505 + MGP_AJ_P0048638 Ttc39d protein_coding protein_coding MGP_AJ_T0045674.1 MGP_AJ_G0023151.1 mouse_genomes_project 17 15528111 15535557 - MGP_AJ_P0045674 Fpr1 protein_coding protein_coding MGP_AJ_T0006939.1 MGP_AJ_G0005707.1 mouse_genomes_project 17 31052421 31072426 + Gm26549 lincRNA lincRNA MGP_AJ_T0046198.1 MGP_AJ_G0023328.1 mouse_genomes_project 17 24167369 24169844 - MGP_AJ_P0046198 Metrn protein_coding protein_coding MGP_AJ_T0046199.1 MGP_AJ_G0023328.1 mouse_genomes_project 17 24167745 24169935 - MGP_AJ_P0046199 Metrn protein_coding protein_coding MGP_AJ_T0045843.1 MGP_AJ_G0023238.1 mouse_genomes_project 17 22157675 22159739 + MGP_AJ_P0045843 protein_coding protein_coding MGP_AJ_T0003706.1 MGP_AJ_G0003344.1 mouse_genomes_project 17 7952511 7971053 + A230009B12Rik antisense antisense MGP_AJ_T0003707.1 MGP_AJ_G0003344.1 mouse_genomes_project 17 7952517 7970689 + A230009B12Rik antisense antisense MGP_AJ_T0003708.1 MGP_AJ_G0003344.1 mouse_genomes_project 17 7952591 7990170 + A230009B12Rik antisense antisense MGP_AJ_T0003709.1 MGP_AJ_G0003344.1 mouse_genomes_project 17 7961824 7970688 + A230009B12Rik antisense antisense MGP_AJ_T0000979.1 MGP_AJ_G0000911.1 mouse_genomes_project 17 9232368 9238935 - TEC TEC MGP_AJ_T0100913.1 MGP_AJ_G0038879.1 mouse_genomes_project 17 10421175 10421313 + Gm26130 snoRNA snoRNA MGP_AJ_T0046937.1 MGP_AJ_G0023501.1 mouse_genomes_project 17 32650326 32673051 - MGP_AJ_P0046937 protein_coding protein_coding MGP_AJ_T0046938.1 MGP_AJ_G0023501.1 mouse_genomes_project 17 32650328 32673023 - MGP_AJ_P0046938 protein_coding protein_coding MGP_AJ_T0046939.1 MGP_AJ_G0023501.1 mouse_genomes_project 17 32662586 32673021 - protein_coding retained_intron MGP_AJ_T0046940.1 MGP_AJ_G0023501.1 mouse_genomes_project 17 32663047 32672994 - protein_coding retained_intron MGP_AJ_T0046941.1 MGP_AJ_G0023501.1 mouse_genomes_project 17 32664625 32672929 - MGP_AJ_P0046941 protein_coding protein_coding MGP_AJ_T0046942.1 MGP_AJ_G0023501.1 mouse_genomes_project 17 32668726 32672986 - protein_coding retained_intron MGP_AJ_T0000983.1 MGP_AJ_G0000914.1 mouse_genomes_project 17 50227391 50228408 + TEC TEC MGP_AJ_T0048205.1 MGP_AJ_G0023862.1 mouse_genomes_project 17 56021134 56025533 + MGP_AJ_P0048205 Ebi3 protein_coding protein_coding MGP_AJ_T0102382.1 MGP_AJ_G0040124.1 mouse_genomes_project 17 18225262 18232042 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0045967.1 MGP_AJ_G0023270.1 mouse_genomes_project 17 22997083 23007978 - MGP_AJ_P0045967 Slc9a3r2 protein_coding protein_coding MGP_AJ_T0045968.1 MGP_AJ_G0023270.1 mouse_genomes_project 17 22997083 23002661 - MGP_AJ_P0045968 Slc9a3r2 protein_coding protein_coding MGP_AJ_T0047894.1 MGP_AJ_G0023765.1 mouse_genomes_project 17 46153845 46157980 - MGP_AJ_P0047894 Polr1c protein_coding protein_coding MGP_AJ_T0047895.1 MGP_AJ_G0023765.1 mouse_genomes_project 17 46154026 46156499 - MGP_AJ_P0047895 Polr1c protein_coding protein_coding MGP_AJ_T0047896.1 MGP_AJ_G0023765.1 mouse_genomes_project 17 46154449 46157858 - Polr1c protein_coding retained_intron MGP_AJ_T0047897.1 MGP_AJ_G0023765.1 mouse_genomes_project 17 46154538 46157894 - MGP_AJ_P0047897 Polr1c protein_coding protein_coding MGP_AJ_T0047898.1 MGP_AJ_G0023765.1 mouse_genomes_project 17 46154760 46157894 - MGP_AJ_P0047898 Polr1c protein_coding protein_coding MGP_AJ_T0047899.1 MGP_AJ_G0023765.1 mouse_genomes_project 17 46154858 46157894 - MGP_AJ_P0047899 Polr1c protein_coding nonsense_mediated_decay MGP_AJ_T0047900.1 MGP_AJ_G0023765.1 mouse_genomes_project 17 46155187 46157893 - Polr1c protein_coding retained_intron MGP_AJ_T0047901.1 MGP_AJ_G0023765.1 mouse_genomes_project 17 46157224 46157894 - Polr1c protein_coding retained_intron MGP_AJ_T0003788.1 MGP_AJ_G0003401.1 mouse_genomes_project 17 71937687 71938656 - Gm15641 antisense antisense MGP_AJ_T0010227.1 MGP_AJ_G0008349.1 mouse_genomes_project 17 91636160 91636221 + Gm27475 miRNA miRNA MGP_AJ_T0100941.1 MGP_AJ_G0038907.1 mouse_genomes_project 17 92344675 92344805 - Gm24244 snoRNA snoRNA MGP_AJ_T0048501.1 MGP_AJ_G0023964.1 mouse_genomes_project 17 71459655 71518682 - MGP_AJ_P0048501 Emilin2 protein_coding protein_coding MGP_AJ_T0047069.1 MGP_AJ_G0023525.1 mouse_genomes_project 17 33039465 33042614 + MGP_AJ_P0047069 Psmb8 protein_coding protein_coding MGP_AJ_T0047070.1 MGP_AJ_G0023525.1 mouse_genomes_project 17 33039534 33043149 + MGP_AJ_P0047070 Psmb8 protein_coding protein_coding MGP_AJ_T0047071.1 MGP_AJ_G0023525.1 mouse_genomes_project 17 33040351 33043119 + Psmb8 protein_coding retained_intron MGP_AJ_T0047643.1 MGP_AJ_G0023653.1 mouse_genomes_project 17 36229391 36262087 + MGP_AJ_P0047643 Gabbr1 protein_coding protein_coding MGP_AJ_T0047644.1 MGP_AJ_G0023653.1 mouse_genomes_project 17 36229445 36261310 + MGP_AJ_P0047644 Gabbr1 protein_coding nonsense_mediated_decay MGP_AJ_T0047645.1 MGP_AJ_G0023653.1 mouse_genomes_project 17 36229453 36232900 + MGP_AJ_P0047645 Gabbr1 protein_coding protein_coding MGP_AJ_T0047646.1 MGP_AJ_G0023653.1 mouse_genomes_project 17 36229624 36230266 + Gabbr1 protein_coding retained_intron MGP_AJ_T0047647.1 MGP_AJ_G0023653.1 mouse_genomes_project 17 36229993 36232900 + MGP_AJ_P0047647 Gabbr1 protein_coding protein_coding MGP_AJ_T0047648.1 MGP_AJ_G0023653.1 mouse_genomes_project 17 36232010 36234560 + Gabbr1 protein_coding processed_transcript MGP_AJ_T0047649.1 MGP_AJ_G0023653.1 mouse_genomes_project 17 36234063 36261324 + MGP_AJ_P0047649 Gabbr1 protein_coding protein_coding MGP_AJ_T0047650.1 MGP_AJ_G0023653.1 mouse_genomes_project 17 36234106 36239790 + MGP_AJ_P0047650 Gabbr1 protein_coding protein_coding MGP_AJ_T0047651.1 MGP_AJ_G0023653.1 mouse_genomes_project 17 36239144 36240296 + Gabbr1 protein_coding retained_intron MGP_AJ_T0047652.1 MGP_AJ_G0023653.1 mouse_genomes_project 17 36246424 36248296 + Gabbr1 protein_coding retained_intron MGP_AJ_T0047653.1 MGP_AJ_G0023653.1 mouse_genomes_project 17 36257482 36259252 + Gabbr1 protein_coding retained_intron MGP_AJ_T0003712.1 MGP_AJ_G0003346.1 mouse_genomes_project 17 8581685 8588906 - Gm28505 antisense antisense MGP_AJ_T0045722.1 MGP_AJ_G0023191.1 mouse_genomes_project 17 19231640 19234104 + MGP_AJ_P0045722 Vmn1r235 protein_coding protein_coding MGP_AJ_T0046698.1 MGP_AJ_G0023444.1 mouse_genomes_project 17 29988110 30013109 - MGP_AJ_P0046698 Rsph1 protein_coding protein_coding MGP_AJ_T0046182.1 MGP_AJ_G0023324.1 mouse_genomes_project 17 24146572 24156146 + MGP_AJ_P0046182 Narfl protein_coding protein_coding MGP_AJ_T0046183.1 MGP_AJ_G0023324.1 mouse_genomes_project 17 24146572 24155605 + MGP_AJ_P0046183 Narfl protein_coding protein_coding MGP_AJ_T0046184.1 MGP_AJ_G0023324.1 mouse_genomes_project 17 24146603 24148022 + Narfl protein_coding retained_intron MGP_AJ_T0046185.1 MGP_AJ_G0023324.1 mouse_genomes_project 17 24146613 24152327 + MGP_AJ_P0046185 Narfl protein_coding nonsense_mediated_decay MGP_AJ_T0046186.1 MGP_AJ_G0023324.1 mouse_genomes_project 17 24146615 24155610 + Narfl protein_coding retained_intron MGP_AJ_T0046187.1 MGP_AJ_G0023324.1 mouse_genomes_project 17 24149633 24152407 + Narfl protein_coding retained_intron MGP_AJ_T0047968.1 MGP_AJ_G0023786.1 mouse_genomes_project 17 46616536 46638365 - MGP_AJ_P0047968 Ppp2r5d protein_coding protein_coding MGP_AJ_T0046154.1 MGP_AJ_G0023315.1 mouse_genomes_project 17 23843819 23848822 + MGP_AJ_P0046154 Tekt4 protein_coding protein_coding MGP_AJ_T0013241.1 MGP_AJ_G0011336.1 mouse_genomes_project 17 35334824 35335040 - processed_pseudogene processed_pseudogene MGP_AJ_T0006972.1 MGP_AJ_G0005733.1 mouse_genomes_project 17 60100158 60228312 - Gm29051 lincRNA lincRNA MGP_AJ_T0048634.1 MGP_AJ_G0024013.1 mouse_genomes_project 17 80476820 80535234 + MGP_AJ_P0048634 Galm protein_coding protein_coding MGP_AJ_T0048635.1 MGP_AJ_G0024013.1 mouse_genomes_project 17 80494708 80533666 + MGP_AJ_P0048635 Galm protein_coding protein_coding MGP_AJ_T0048006.1 MGP_AJ_G0023804.1 mouse_genomes_project 17 47355753 47379684 - MGP_AJ_P0048006 1700001C19Rik protein_coding protein_coding MGP_AJ_T0048007.1 MGP_AJ_G0023804.1 mouse_genomes_project 17 47356394 47364640 - MGP_AJ_P0048007 1700001C19Rik protein_coding protein_coding MGP_AJ_T0048008.1 MGP_AJ_G0023804.1 mouse_genomes_project 17 47356402 47357731 - 1700001C19Rik protein_coding processed_transcript MGP_AJ_T0048009.1 MGP_AJ_G0023804.1 mouse_genomes_project 17 47356647 47379685 - 1700001C19Rik protein_coding processed_transcript MGP_AJ_T0046332.1 MGP_AJ_G0023356.1 mouse_genomes_project 17 24647331 24676216 + MGP_AJ_P0046332 Luc7l protein_coding protein_coding MGP_AJ_T0046333.1 MGP_AJ_G0023356.1 mouse_genomes_project 17 24647372 24681121 + MGP_AJ_P0046333 Luc7l protein_coding protein_coding MGP_AJ_T0046334.1 MGP_AJ_G0023356.1 mouse_genomes_project 17 24647377 24673312 + MGP_AJ_P0046334 Luc7l protein_coding protein_coding MGP_AJ_T0046335.1 MGP_AJ_G0023356.1 mouse_genomes_project 17 24647387 24677563 + MGP_AJ_P0046335 Luc7l protein_coding nonsense_mediated_decay MGP_AJ_T0046336.1 MGP_AJ_G0023356.1 mouse_genomes_project 17 24647387 24677561 + MGP_AJ_P0046336 Luc7l protein_coding protein_coding MGP_AJ_T0046337.1 MGP_AJ_G0023356.1 mouse_genomes_project 17 24647405 24676217 + Luc7l protein_coding retained_intron MGP_AJ_T0046338.1 MGP_AJ_G0023356.1 mouse_genomes_project 17 24647420 24676220 + MGP_AJ_P0046338 Luc7l protein_coding nonsense_mediated_decay MGP_AJ_T0046339.1 MGP_AJ_G0023356.1 mouse_genomes_project 17 24647643 24662072 + MGP_AJ_P0046339 Luc7l protein_coding protein_coding MGP_AJ_T0046340.1 MGP_AJ_G0023356.1 mouse_genomes_project 17 24647806 24648674 + Luc7l protein_coding processed_transcript MGP_AJ_T0046341.1 MGP_AJ_G0023356.1 mouse_genomes_project 17 24662953 24677539 + MGP_AJ_P0046341 Luc7l protein_coding protein_coding MGP_AJ_T0047375.1 MGP_AJ_G0023587.1 mouse_genomes_project 17 34169719 34172348 - MGP_AJ_P0047375 Tnf protein_coding protein_coding MGP_AJ_T0047376.1 MGP_AJ_G0023587.1 mouse_genomes_project 17 34169845 34172345 - MGP_AJ_P0047376 Tnf protein_coding protein_coding MGP_AJ_T0048654.1 MGP_AJ_G0024027.1 mouse_genomes_project 17 81748659 82009069 - MGP_AJ_P0048654 Slc8a1 protein_coding protein_coding MGP_AJ_T0048655.1 MGP_AJ_G0024027.1 mouse_genomes_project 17 81748659 82009069 - MGP_AJ_P0048655 Slc8a1 protein_coding protein_coding MGP_AJ_T0048656.1 MGP_AJ_G0024027.1 mouse_genomes_project 17 81748659 82009069 - MGP_AJ_P0048656 Slc8a1 protein_coding protein_coding MGP_AJ_T0013271.1 MGP_AJ_G0011366.1 mouse_genomes_project 17 53718714 53719481 + processed_pseudogene processed_pseudogene MGP_AJ_T0013301.1 MGP_AJ_G0011396.1 mouse_genomes_project 17 90424731 90425549 - processed_pseudogene processed_pseudogene MGP_AJ_T0047266.1 MGP_AJ_G0023565.1 mouse_genomes_project 17 33975341 33990566 + MGP_AJ_P0047266 Vars protein_coding protein_coding MGP_AJ_T0047267.1 MGP_AJ_G0023565.1 mouse_genomes_project 17 33975405 33990274 + MGP_AJ_P0047267 Vars protein_coding protein_coding MGP_AJ_T0047268.1 MGP_AJ_G0023565.1 mouse_genomes_project 17 33975671 33979155 + MGP_AJ_P0047268 Vars protein_coding protein_coding MGP_AJ_T0047269.1 MGP_AJ_G0023565.1 mouse_genomes_project 17 33977011 33979205 + MGP_AJ_P0047269 Vars protein_coding protein_coding MGP_AJ_T0047270.1 MGP_AJ_G0023565.1 mouse_genomes_project 17 33977068 33990566 + Vars protein_coding retained_intron MGP_AJ_T0047271.1 MGP_AJ_G0023565.1 mouse_genomes_project 17 33978646 33979414 + Vars protein_coding retained_intron MGP_AJ_T0047272.1 MGP_AJ_G0023565.1 mouse_genomes_project 17 33979064 33979682 + Vars protein_coding retained_intron MGP_AJ_T0047273.1 MGP_AJ_G0023565.1 mouse_genomes_project 17 33985458 33986643 + Vars protein_coding retained_intron MGP_AJ_T0047274.1 MGP_AJ_G0023565.1 mouse_genomes_project 17 33986407 33987326 + Vars protein_coding retained_intron MGP_AJ_T0047275.1 MGP_AJ_G0023565.1 mouse_genomes_project 17 33987526 33988713 + Vars protein_coding retained_intron MGP_AJ_T0047276.1 MGP_AJ_G0023565.1 mouse_genomes_project 17 33988070 33989291 + MGP_AJ_P0047276 Vars protein_coding protein_coding MGP_AJ_T0047277.1 MGP_AJ_G0023565.1 mouse_genomes_project 17 33988079 33989081 + Vars protein_coding retained_intron MGP_AJ_T0047278.1 MGP_AJ_G0023565.1 mouse_genomes_project 17 33989208 33990255 + Vars protein_coding retained_intron MGP_AJ_T0046773.1 MGP_AJ_G0023460.1 mouse_genomes_project 17 31127628 31156299 - MGP_AJ_P0046773 Wiz protein_coding nonsense_mediated_decay MGP_AJ_T0046774.1 MGP_AJ_G0023460.1 mouse_genomes_project 17 31127629 31156999 - MGP_AJ_P0046774 Wiz protein_coding unknown_likely_coding MGP_AJ_T0046775.1 MGP_AJ_G0023460.1 mouse_genomes_project 17 31127630 31156540 - MGP_AJ_P0046775 Wiz protein_coding protein_coding MGP_AJ_T0046776.1 MGP_AJ_G0023460.1 mouse_genomes_project 17 31127634 31157046 - MGP_AJ_P0046776 Wiz protein_coding nonsense_mediated_decay MGP_AJ_T0046777.1 MGP_AJ_G0023460.1 mouse_genomes_project 17 31128222 31136539 - MGP_AJ_P0046777 Wiz protein_coding protein_coding MGP_AJ_T0046778.1 MGP_AJ_G0023460.1 mouse_genomes_project 17 31128597 31155414 - MGP_AJ_P0046778 Wiz protein_coding protein_coding MGP_AJ_T0046779.1 MGP_AJ_G0023460.1 mouse_genomes_project 17 31135250 31138039 - Wiz protein_coding processed_transcript MGP_AJ_T0046780.1 MGP_AJ_G0023460.1 mouse_genomes_project 17 31135389 31144186 - Wiz protein_coding retained_intron MGP_AJ_T0046781.1 MGP_AJ_G0023460.1 mouse_genomes_project 17 31135484 31156241 - MGP_AJ_P0046781 Wiz protein_coding protein_coding MGP_AJ_T0046782.1 MGP_AJ_G0023460.1 mouse_genomes_project 17 31141798 31156381 - Wiz protein_coding retained_intron MGP_AJ_T0046783.1 MGP_AJ_G0023460.1 mouse_genomes_project 17 31142838 31156605 - MGP_AJ_P0046783 Wiz protein_coding nonsense_mediated_decay MGP_AJ_T0046784.1 MGP_AJ_G0023460.1 mouse_genomes_project 17 31144072 31157031 - MGP_AJ_P0046784 Wiz protein_coding nonsense_mediated_decay MGP_AJ_T0046785.1 MGP_AJ_G0023460.1 mouse_genomes_project 17 31144186 31157056 - Wiz protein_coding retained_intron MGP_AJ_T0046786.1 MGP_AJ_G0023460.1 mouse_genomes_project 17 31155227 31156771 - MGP_AJ_P0046786 Wiz protein_coding protein_coding MGP_AJ_T0047666.1 MGP_AJ_G0023666.1 mouse_genomes_project 17 36531206 36532330 - MGP_AJ_P0047666 protein_coding protein_coding MGP_AJ_T0003731.1 MGP_AJ_G0003359.1 mouse_genomes_project 17 26467734 26488055 - Gm15598 antisense antisense MGP_AJ_T0013207.1 MGP_AJ_G0011302.1 mouse_genomes_project 17 5316991 5317571 + processed_pseudogene processed_pseudogene MGP_AJ_T0013233.1 MGP_AJ_G0011328.1 mouse_genomes_project 17 32925719 32925932 - processed_pseudogene processed_pseudogene MGP_AJ_T0045731.1 MGP_AJ_G0023197.1 mouse_genomes_project 17 19486567 19505010 + MGP_AJ_P0045731 Zfp53 protein_coding protein_coding MGP_AJ_T0013208.1 MGP_AJ_G0011303.1 mouse_genomes_project 17 6062515 6067118 - processed_pseudogene processed_pseudogene MGP_AJ_T0047094.1 MGP_AJ_G0023535.1 mouse_genomes_project 17 33241654 33305178 + MGP_AJ_P0047094 BC051142 protein_coding protein_coding MGP_AJ_T0047095.1 MGP_AJ_G0023535.1 mouse_genomes_project 17 33241655 33261077 + BC051142 protein_coding processed_transcript MGP_AJ_T0047096.1 MGP_AJ_G0023535.1 mouse_genomes_project 17 33241655 33305178 + MGP_AJ_P0047096 BC051142 protein_coding protein_coding MGP_AJ_T0047097.1 MGP_AJ_G0023535.1 mouse_genomes_project 17 33241655 33289136 + MGP_AJ_P0047097 BC051142 protein_coding protein_coding MGP_AJ_T0047098.1 MGP_AJ_G0023535.1 mouse_genomes_project 17 33241656 33264183 + BC051142 protein_coding retained_intron MGP_AJ_T0047099.1 MGP_AJ_G0023535.1 mouse_genomes_project 17 33241675 33305178 + MGP_AJ_P0047099 BC051142 protein_coding protein_coding MGP_AJ_T0047100.1 MGP_AJ_G0023535.1 mouse_genomes_project 17 33260461 33283481 + MGP_AJ_P0047100 BC051142 protein_coding protein_coding MGP_AJ_T0047101.1 MGP_AJ_G0023535.1 mouse_genomes_project 17 33260914 33305179 + MGP_AJ_P0047101 BC051142 protein_coding unknown_likely_coding MGP_AJ_T0047102.1 MGP_AJ_G0023535.1 mouse_genomes_project 17 33261072 33279191 + BC051142 protein_coding processed_transcript MGP_AJ_T0047103.1 MGP_AJ_G0023535.1 mouse_genomes_project 17 33261094 33264948 + MGP_AJ_P0047103 BC051142 protein_coding protein_coding MGP_AJ_T0047104.1 MGP_AJ_G0023535.1 mouse_genomes_project 17 33261133 33305179 + MGP_AJ_P0047104 BC051142 protein_coding unknown_likely_coding MGP_AJ_T0047746.1 MGP_AJ_G0023728.1 mouse_genomes_project 17 42670287 42754402 - MGP_AJ_P0047746 Cd2ap protein_coding protein_coding MGP_AJ_T0100928.1 MGP_AJ_G0038894.1 mouse_genomes_project 17 59311673 59311794 - Gm23769 snoRNA snoRNA MGP_AJ_T0048620.1 MGP_AJ_G0024007.1 mouse_genomes_project 17 79664013 79685145 - MGP_AJ_P0048620 Cdc42ep3 protein_coding protein_coding MGP_AJ_T0048357.1 MGP_AJ_G0023926.1 mouse_genomes_project 17 59086822 59100573 - MGP_AJ_P0048357 Nudt12 protein_coding protein_coding MGP_AJ_T0048358.1 MGP_AJ_G0023926.1 mouse_genomes_project 17 59087311 59090908 - Nudt12 protein_coding retained_intron MGP_AJ_T0048359.1 MGP_AJ_G0023926.1 mouse_genomes_project 17 59093595 59100469 - MGP_AJ_P0048359 Nudt12 protein_coding protein_coding MGP_AJ_T0006942.1 MGP_AJ_G0005710.1 mouse_genomes_project 17 32687762 32689234 + Platr17 lincRNA lincRNA MGP_AJ_T0102415.1 MGP_AJ_G0040157.1 mouse_genomes_project 17 35359289 35362095 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0047008.1 MGP_AJ_G0023516.1 mouse_genomes_project 17 32818155 32819222 - H2-Ke6 protein_coding retained_intron MGP_AJ_T0047009.1 MGP_AJ_G0023516.1 mouse_genomes_project 17 32818155 32818879 - H2-Ke6 protein_coding retained_intron MGP_AJ_T0047010.1 MGP_AJ_G0023516.1 mouse_genomes_project 17 32818155 32820184 - MGP_AJ_P0047010 H2-Ke6 protein_coding protein_coding MGP_AJ_T0047011.1 MGP_AJ_G0023516.1 mouse_genomes_project 17 32818158 32820174 - H2-Ke6 protein_coding retained_intron MGP_AJ_T0047012.1 MGP_AJ_G0023516.1 mouse_genomes_project 17 32818279 32819076 - H2-Ke6 protein_coding retained_intron MGP_AJ_T0047013.1 MGP_AJ_G0023516.1 mouse_genomes_project 17 32818530 32819991 - H2-Ke6 protein_coding processed_transcript MGP_AJ_T0047014.1 MGP_AJ_G0023516.1 mouse_genomes_project 17 32818791 32820188 - MGP_AJ_P0047014 H2-Ke6 protein_coding protein_coding MGP_AJ_T0047015.1 MGP_AJ_G0023516.1 mouse_genomes_project 17 32819037 32820166 - H2-Ke6 protein_coding retained_intron MGP_AJ_T0100919.1 MGP_AJ_G0038885.1 mouse_genomes_project 17 23678634 23678771 + Gm25921 snoRNA snoRNA MGP_AJ_T0045930.1 MGP_AJ_G0023264.1 mouse_genomes_project 17 22844958 22864989 + MGP_AJ_P0045930 Caskin1 protein_coding protein_coding MGP_AJ_T0010172.1 MGP_AJ_G0008294.1 mouse_genomes_project 17 15482404 15482472 + Mir125a miRNA miRNA MGP_AJ_T0045452.1 MGP_AJ_G0023094.1 mouse_genomes_project 17 5242555 5309232 - MGP_AJ_P0045452 Fndc1 protein_coding protein_coding MGP_AJ_T0045453.1 MGP_AJ_G0023094.1 mouse_genomes_project 17 5250930 5265270 - Fndc1 protein_coding processed_transcript MGP_AJ_T0045454.1 MGP_AJ_G0023094.1 mouse_genomes_project 17 5265552 5271797 - Fndc1 protein_coding retained_intron MGP_AJ_T0045455.1 MGP_AJ_G0023094.1 mouse_genomes_project 17 5287180 5331233 - MGP_AJ_P0045455 Fndc1 protein_coding protein_coding MGP_AJ_T0045456.1 MGP_AJ_G0023094.1 mouse_genomes_project 17 5305120 5331233 - MGP_AJ_P0045456 Fndc1 protein_coding protein_coding MGP_AJ_T0011440.1 MGP_AJ_G0009562.1 mouse_genomes_project 17 86024918 86025190 + Gm27275 misc_RNA misc_RNA MGP_AJ_T0048222.1 MGP_AJ_G0023870.1 mouse_genomes_project 17 56143555 56151539 - MGP_AJ_P0048222 Ubxn6 protein_coding protein_coding MGP_AJ_T0048223.1 MGP_AJ_G0023870.1 mouse_genomes_project 17 56144760 56151528 - Ubxn6 protein_coding retained_intron MGP_AJ_T0048224.1 MGP_AJ_G0023870.1 mouse_genomes_project 17 56144760 56148743 - Ubxn6 protein_coding retained_intron MGP_AJ_T0048225.1 MGP_AJ_G0023870.1 mouse_genomes_project 17 56145046 56145945 - Ubxn6 protein_coding retained_intron MGP_AJ_T0048226.1 MGP_AJ_G0023870.1 mouse_genomes_project 17 56146148 56148951 - Ubxn6 protein_coding processed_transcript MGP_AJ_T0048227.1 MGP_AJ_G0023870.1 mouse_genomes_project 17 56146628 56151359 - Ubxn6 protein_coding retained_intron MGP_AJ_T0048228.1 MGP_AJ_G0023870.1 mouse_genomes_project 17 56147154 56151058 - MGP_AJ_P0048228 Ubxn6 protein_coding protein_coding MGP_AJ_T0048653.1 MGP_AJ_G0024026.1 mouse_genomes_project 17 81410762 81449366 - MGP_AJ_P0048653 Thumpd2 protein_coding protein_coding MGP_AJ_T0102443.1 MGP_AJ_G0040185.1 mouse_genomes_project 17 37251838 37254592 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0045597.1 MGP_AJ_G0023131.1 mouse_genomes_project 17 12309647 12338361 - MGP_AJ_P0045597 Thbs2 protein_coding protein_coding MGP_AJ_T0010223.1 MGP_AJ_G0008345.1 mouse_genomes_project 17 71037689 71037787 - Mir1195 miRNA miRNA MGP_AJ_T0046453.1 MGP_AJ_G0023387.1 mouse_genomes_project 17 26322534 26365907 + MGP_AJ_P0046453 Uhrf1bp1 protein_coding protein_coding MGP_AJ_T0046454.1 MGP_AJ_G0023387.1 mouse_genomes_project 17 26323287 26345757 + Uhrf1bp1 protein_coding processed_transcript MGP_AJ_T0046455.1 MGP_AJ_G0023387.1 mouse_genomes_project 17 26355926 26361173 + Uhrf1bp1 protein_coding processed_transcript MGP_AJ_T0047795.1 MGP_AJ_G0023744.1 mouse_genomes_project 17 45291850 45333744 - MGP_AJ_P0047795 Cdc5l protein_coding protein_coding MGP_AJ_T0099674.1 MGP_AJ_G0037640.1 mouse_genomes_project 17 85012469 85012578 + Gm26066 snRNA snRNA MGP_AJ_T0099655.1 MGP_AJ_G0037621.1 mouse_genomes_project 17 40770241 40770389 - Gm23078 snRNA snRNA MGP_AJ_T0047247.1 MGP_AJ_G0023560.1 mouse_genomes_project 17 33888667 33904568 + Slc44a4 protein_coding retained_intron MGP_AJ_T0047248.1 MGP_AJ_G0023560.1 mouse_genomes_project 17 33888671 33904545 + MGP_AJ_P0047248 Slc44a4 protein_coding protein_coding MGP_AJ_T0047249.1 MGP_AJ_G0023560.1 mouse_genomes_project 17 33891916 33904625 + MGP_AJ_P0047249 Slc44a4 protein_coding protein_coding MGP_AJ_T0046504.1 MGP_AJ_G0023396.1 mouse_genomes_project 17 26809993 26812556 + MGP_AJ_P0046504 Rpl10a protein_coding protein_coding MGP_AJ_T0046505.1 MGP_AJ_G0023396.1 mouse_genomes_project 17 26810105 26811161 + Rpl10a protein_coding retained_intron MGP_AJ_T0046506.1 MGP_AJ_G0023396.1 mouse_genomes_project 17 26810106 26812556 + MGP_AJ_P0046506 Rpl10a protein_coding nonsense_mediated_decay MGP_AJ_T0046507.1 MGP_AJ_G0023396.1 mouse_genomes_project 17 26810132 26810918 + Rpl10a protein_coding retained_intron MGP_AJ_T0046508.1 MGP_AJ_G0023396.1 mouse_genomes_project 17 26810169 26811045 + Rpl10a protein_coding retained_intron MGP_AJ_T0046509.1 MGP_AJ_G0023396.1 mouse_genomes_project 17 26810333 26812221 + Rpl10a protein_coding retained_intron MGP_AJ_T0046510.1 MGP_AJ_G0023396.1 mouse_genomes_project 17 26810800 26812551 + Rpl10a protein_coding retained_intron MGP_AJ_T0045579.1 MGP_AJ_G0023128.1 mouse_genomes_project 17 11344713 11393490 + MGP_AJ_P0045579 Mllt4 protein_coding protein_coding MGP_AJ_T0045580.1 MGP_AJ_G0023128.1 mouse_genomes_project 17 11344715 11393490 + MGP_AJ_P0045580 Mllt4 protein_coding protein_coding MGP_AJ_T0045581.1 MGP_AJ_G0023128.1 mouse_genomes_project 17 11344715 11482899 + MGP_AJ_P0045581 Mllt4 protein_coding protein_coding MGP_AJ_T0045582.1 MGP_AJ_G0023128.1 mouse_genomes_project 17 11344722 11483255 + MGP_AJ_P0045582 Mllt4 protein_coding protein_coding MGP_AJ_T0045583.1 MGP_AJ_G0023128.1 mouse_genomes_project 17 11344773 11481237 + MGP_AJ_P0045583 Mllt4 protein_coding protein_coding MGP_AJ_T0045584.1 MGP_AJ_G0023128.1 mouse_genomes_project 17 11344773 11473428 + MGP_AJ_P0045584 Mllt4 protein_coding protein_coding MGP_AJ_T0045585.1 MGP_AJ_G0023128.1 mouse_genomes_project 17 11344864 11481112 + MGP_AJ_P0045585 Mllt4 protein_coding protein_coding MGP_AJ_T0045586.1 MGP_AJ_G0023128.1 mouse_genomes_project 17 11345779 11431977 + Mllt4 protein_coding processed_transcript MGP_AJ_T0045587.1 MGP_AJ_G0023128.1 mouse_genomes_project 17 11428713 11433348 + Mllt4 protein_coding retained_intron MGP_AJ_T0045588.1 MGP_AJ_G0023128.1 mouse_genomes_project 17 11429484 11433035 + Mllt4 protein_coding processed_transcript MGP_AJ_T0045589.1 MGP_AJ_G0023128.1 mouse_genomes_project 17 11452174 11459673 + Mllt4 protein_coding processed_transcript MGP_AJ_T0045590.1 MGP_AJ_G0023128.1 mouse_genomes_project 17 11459153 11460038 + Mllt4 protein_coding retained_intron MGP_AJ_T0045591.1 MGP_AJ_G0023128.1 mouse_genomes_project 17 11465157 11481181 + MGP_AJ_P0045591 Mllt4 protein_coding protein_coding MGP_AJ_T0045592.1 MGP_AJ_G0023128.1 mouse_genomes_project 17 11465986 11646881 + Mllt4 protein_coding retained_intron MGP_AJ_T0045593.1 MGP_AJ_G0023128.1 mouse_genomes_project 17 11475766 11481474 + Mllt4 protein_coding retained_intron MGP_AJ_T0045594.1 MGP_AJ_G0023128.1 mouse_genomes_project 17 11475928 11482900 + Mllt4 protein_coding retained_intron MGP_AJ_T0000994.1 MGP_AJ_G0000925.1 mouse_genomes_project 17 71573950 71576742 - TEC TEC MGP_AJ_T0047952.1 MGP_AJ_G0023780.1 mouse_genomes_project 17 46562254 46576809 - MGP_AJ_P0047952 Klc4 protein_coding protein_coding MGP_AJ_T0046443.1 MGP_AJ_G0023384.1 mouse_genomes_project 17 26179221 26193807 - MGP_AJ_P0046443 Spdef protein_coding protein_coding MGP_AJ_T0046444.1 MGP_AJ_G0023384.1 mouse_genomes_project 17 26179316 26193808 - MGP_AJ_P0046444 Spdef protein_coding protein_coding MGP_AJ_T0046445.1 MGP_AJ_G0023384.1 mouse_genomes_project 17 26179318 26193746 - MGP_AJ_P0046445 Spdef protein_coding protein_coding MGP_AJ_T0046446.1 MGP_AJ_G0023384.1 mouse_genomes_project 17 26179374 26182458 - Spdef protein_coding processed_transcript MGP_AJ_T0046447.1 MGP_AJ_G0023384.1 mouse_genomes_project 17 26184865 26193781 - MGP_AJ_P0046447 Spdef protein_coding protein_coding MGP_AJ_T0046456.1 MGP_AJ_G0023388.1 mouse_genomes_project 17 26366816 26374911 - MGP_AJ_P0046456 Taf11 protein_coding protein_coding MGP_AJ_T0046457.1 MGP_AJ_G0023388.1 mouse_genomes_project 17 26366822 26373392 - MGP_AJ_P0046457 Taf11 protein_coding protein_coding MGP_AJ_T0046458.1 MGP_AJ_G0023388.1 mouse_genomes_project 17 26367356 26368969 - Taf11 protein_coding processed_transcript MGP_AJ_T0003779.1 MGP_AJ_G0003394.1 mouse_genomes_project 17 52606717 52617188 - Gm27217 antisense antisense MGP_AJ_T0101974.1 MGP_AJ_G0039806.1 mouse_genomes_project 17 95265369 95293109 + transcribed_unprocessed_pseudogene processed_transcript MGP_AJ_T0101975.1 MGP_AJ_G0039806.1 mouse_genomes_project 17 95265381 95272799 + transcribed_unprocessed_pseudogene processed_transcript MGP_AJ_T0101976.1 MGP_AJ_G0039806.1 mouse_genomes_project 17 95265407 95293112 + transcribed_unprocessed_pseudogene processed_transcript MGP_AJ_T0101977.1 MGP_AJ_G0039806.1 mouse_genomes_project 17 95267772 95293006 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_AJ_T0048432.1 MGP_AJ_G0023950.1 mouse_genomes_project 17 67862343 67990040 + MGP_AJ_P0048432 Lama1 protein_coding protein_coding MGP_AJ_T0048307.1 MGP_AJ_G0023901.1 mouse_genomes_project 17 57010794 57055261 - MGP_AJ_P0048307 Mllt1 protein_coding protein_coding MGP_AJ_T0047875.1 MGP_AJ_G0023762.1 mouse_genomes_project 17 46069405 46077744 + MGP_AJ_P0047875 Gtpbp2 protein_coding protein_coding MGP_AJ_T0047876.1 MGP_AJ_G0023762.1 mouse_genomes_project 17 46069405 46077742 + MGP_AJ_P0047876 Gtpbp2 protein_coding nonsense_mediated_decay MGP_AJ_T0047877.1 MGP_AJ_G0023762.1 mouse_genomes_project 17 46069422 46071879 + Gtpbp2 protein_coding processed_transcript MGP_AJ_T0047878.1 MGP_AJ_G0023762.1 mouse_genomes_project 17 46069439 46077710 + MGP_AJ_P0047878 Gtpbp2 protein_coding protein_coding MGP_AJ_T0047879.1 MGP_AJ_G0023762.1 mouse_genomes_project 17 46069484 46072681 + MGP_AJ_P0047879 Gtpbp2 protein_coding protein_coding MGP_AJ_T0047880.1 MGP_AJ_G0023762.1 mouse_genomes_project 17 46069534 46070532 + Gtpbp2 protein_coding processed_transcript MGP_AJ_T0047881.1 MGP_AJ_G0023762.1 mouse_genomes_project 17 46069668 46073124 + Gtpbp2 protein_coding processed_transcript MGP_AJ_T0047882.1 MGP_AJ_G0023762.1 mouse_genomes_project 17 46071406 46073195 + Gtpbp2 protein_coding retained_intron MGP_AJ_T0047883.1 MGP_AJ_G0023762.1 mouse_genomes_project 17 46071599 46074169 + Gtpbp2 protein_coding processed_transcript MGP_AJ_T0047884.1 MGP_AJ_G0023762.1 mouse_genomes_project 17 46071691 46073562 + Gtpbp2 protein_coding retained_intron MGP_AJ_T0047885.1 MGP_AJ_G0023762.1 mouse_genomes_project 17 46074069 46076256 + Gtpbp2 protein_coding retained_intron MGP_AJ_T0047886.1 MGP_AJ_G0023762.1 mouse_genomes_project 17 46074151 46075706 + Gtpbp2 protein_coding retained_intron MGP_AJ_T0047887.1 MGP_AJ_G0023762.1 mouse_genomes_project 17 46074804 46076608 + MGP_AJ_P0047887 Gtpbp2 protein_coding nonsense_mediated_decay MGP_AJ_T0047888.1 MGP_AJ_G0023762.1 mouse_genomes_project 17 46075240 46076395 + Gtpbp2 protein_coding retained_intron MGP_AJ_T0047889.1 MGP_AJ_G0023762.1 mouse_genomes_project 17 46075361 46076585 + Gtpbp2 protein_coding retained_intron MGP_AJ_T0047890.1 MGP_AJ_G0023762.1 mouse_genomes_project 17 46075604 46076768 + MGP_AJ_P0047890 Gtpbp2 protein_coding protein_coding MGP_AJ_T0047891.1 MGP_AJ_G0023762.1 mouse_genomes_project 17 46076009 46076784 + Gtpbp2 protein_coding retained_intron MGP_AJ_T0046645.1 MGP_AJ_G0023428.1 mouse_genomes_project 17 28189525 28280804 + MGP_AJ_P0046645 Gm28043 protein_coding nonsense_mediated_decay MGP_AJ_T0047585.1 MGP_AJ_G0023638.1 mouse_genomes_project 17 35941484 35944919 + MGP_AJ_P0047585 H2-M10.5 protein_coding protein_coding MGP_AJ_T0046415.1 MGP_AJ_G0023379.1 mouse_genomes_project 17 26015411 26025540 + MGP_AJ_P0046415 protein_coding protein_coding MGP_AJ_T0046416.1 MGP_AJ_G0023379.1 mouse_genomes_project 17 26024795 26024915 + MGP_AJ_P0046416 protein_coding protein_coding MGP_AJ_T0099645.1 MGP_AJ_G0037611.1 mouse_genomes_project 17 24065307 24065408 - Gm22645 snRNA snRNA MGP_AJ_T0046666.1 MGP_AJ_G0023431.1 mouse_genomes_project 17 28415389 28476962 - MGP_AJ_P0046666 Mdga1 protein_coding protein_coding MGP_AJ_T0046667.1 MGP_AJ_G0023431.1 mouse_genomes_project 17 28415391 28476214 - MGP_AJ_P0046667 Mdga1 protein_coding protein_coding MGP_AJ_T0046668.1 MGP_AJ_G0023431.1 mouse_genomes_project 17 28419485 28429914 - Mdga1 protein_coding retained_intron MGP_AJ_T0046669.1 MGP_AJ_G0023431.1 mouse_genomes_project 17 28419695 28422805 - Mdga1 protein_coding processed_transcript MGP_AJ_T0046670.1 MGP_AJ_G0023431.1 mouse_genomes_project 17 28419712 28427403 - MGP_AJ_P0046670 Mdga1 protein_coding protein_coding MGP_AJ_T0046671.1 MGP_AJ_G0023431.1 mouse_genomes_project 17 28429611 28561477 - MGP_AJ_P0046671 Mdga1 protein_coding protein_coding MGP_AJ_T0046672.1 MGP_AJ_G0023431.1 mouse_genomes_project 17 28437274 28475814 - MGP_AJ_P0046672 Mdga1 protein_coding protein_coding MGP_AJ_T0046673.1 MGP_AJ_G0023431.1 mouse_genomes_project 17 28438154 28478354 - Mdga1 protein_coding processed_transcript MGP_AJ_T0010182.1 MGP_AJ_G0008304.1 mouse_genomes_project 17 24974380 24974506 - Gm22420 miRNA miRNA MGP_AJ_T0000988.1 MGP_AJ_G0000919.1 mouse_genomes_project 17 51822127 51825238 - TEC TEC MGP_AJ_T0048004.1 MGP_AJ_G0023802.1 mouse_genomes_project 17 47352063 47353822 + MGP_AJ_P0048004 protein_coding protein_coding MGP_AJ_T0048055.1 MGP_AJ_G0023817.1 mouse_genomes_project 17 47689402 47745869 + MGP_AJ_P0048055 Tfeb protein_coding protein_coding MGP_AJ_T0048056.1 MGP_AJ_G0023817.1 mouse_genomes_project 17 47689972 47739515 + MGP_AJ_P0048056 Tfeb protein_coding protein_coding MGP_AJ_T0048057.1 MGP_AJ_G0023817.1 mouse_genomes_project 17 47690299 47745865 + MGP_AJ_P0048057 Tfeb protein_coding protein_coding MGP_AJ_T0048058.1 MGP_AJ_G0023817.1 mouse_genomes_project 17 47691274 47742512 + MGP_AJ_P0048058 Tfeb protein_coding protein_coding MGP_AJ_T0048059.1 MGP_AJ_G0023817.1 mouse_genomes_project 17 47706706 47739515 + MGP_AJ_P0048059 Tfeb protein_coding protein_coding MGP_AJ_T0048060.1 MGP_AJ_G0023817.1 mouse_genomes_project 17 47711518 47739627 + MGP_AJ_P0048060 Tfeb protein_coding protein_coding MGP_AJ_T0048061.1 MGP_AJ_G0023817.1 mouse_genomes_project 17 47715515 47739728 + MGP_AJ_P0048061 Tfeb protein_coding protein_coding MGP_AJ_T0048062.1 MGP_AJ_G0023817.1 mouse_genomes_project 17 47721499 47739730 + MGP_AJ_P0048062 Tfeb protein_coding protein_coding MGP_AJ_T0048063.1 MGP_AJ_G0023817.1 mouse_genomes_project 17 47721499 47739732 + MGP_AJ_P0048063 Tfeb protein_coding protein_coding MGP_AJ_T0048064.1 MGP_AJ_G0023817.1 mouse_genomes_project 17 47735086 47739808 + MGP_AJ_P0048064 Tfeb protein_coding protein_coding MGP_AJ_T0048065.1 MGP_AJ_G0023817.1 mouse_genomes_project 17 47739150 47745865 + MGP_AJ_P0048065 Tfeb protein_coding protein_coding MGP_AJ_T0048066.1 MGP_AJ_G0023817.1 mouse_genomes_project 17 47739585 47745866 + MGP_AJ_P0048066 Tfeb protein_coding protein_coding MGP_AJ_T0048067.1 MGP_AJ_G0023817.1 mouse_genomes_project 17 47740999 47743158 + Tfeb protein_coding processed_transcript MGP_AJ_T0048068.1 MGP_AJ_G0023817.1 mouse_genomes_project 17 47741341 47742380 + Tfeb protein_coding retained_intron MGP_AJ_T0048069.1 MGP_AJ_G0023817.1 mouse_genomes_project 17 47742882 47745063 + Tfeb protein_coding retained_intron MGP_AJ_T0045608.1 MGP_AJ_G0023135.1 mouse_genomes_project 17 12611534 12629407 - MGP_AJ_P0045608 protein_coding protein_coding MGP_AJ_T0045609.1 MGP_AJ_G0023135.1 mouse_genomes_project 17 12611538 12629385 - MGP_AJ_P0045609 protein_coding protein_coding MGP_AJ_T0048625.1 MGP_AJ_G0024011.1 mouse_genomes_project 17 80185479 80233199 - MGP_AJ_P0048625 Atl2 protein_coding protein_coding MGP_AJ_T0048626.1 MGP_AJ_G0024011.1 mouse_genomes_project 17 80187773 80233197 - MGP_AJ_P0048626 Atl2 protein_coding protein_coding MGP_AJ_T0045603.1 MGP_AJ_G0023134.1 mouse_genomes_project 17 12591297 12607512 - MGP_AJ_P0045603 Phf10 protein_coding protein_coding MGP_AJ_T0045604.1 MGP_AJ_G0023134.1 mouse_genomes_project 17 12591302 12593117 - Phf10 protein_coding retained_intron MGP_AJ_T0045605.1 MGP_AJ_G0023134.1 mouse_genomes_project 17 12592854 12598995 - Phf10 protein_coding retained_intron MGP_AJ_T0045606.1 MGP_AJ_G0023134.1 mouse_genomes_project 17 12594026 12608613 - MGP_AJ_P0045606 Phf10 protein_coding nonsense_mediated_decay MGP_AJ_T0045607.1 MGP_AJ_G0023134.1 mouse_genomes_project 17 12601987 12605804 - Phf10 protein_coding retained_intron MGP_AJ_T0102410.1 MGP_AJ_G0040152.1 mouse_genomes_project 17 35033316 35039349 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0046546.1 MGP_AJ_G0023405.1 mouse_genomes_project 17 27130034 27179792 - MGP_AJ_P0046546 Slc26a8 protein_coding unknown_likely_coding MGP_AJ_T0046547.1 MGP_AJ_G0023405.1 mouse_genomes_project 17 27130034 27180175 - MGP_AJ_P0046547 Slc26a8 protein_coding protein_coding MGP_AJ_T0046548.1 MGP_AJ_G0023405.1 mouse_genomes_project 17 27143232 27191697 - Slc26a8 protein_coding retained_intron MGP_AJ_T0048160.1 MGP_AJ_G0023843.1 mouse_genomes_project 17 50750743 51049874 - MGP_AJ_P0048160 Tbc1d5 protein_coding unknown_likely_coding MGP_AJ_T0048161.1 MGP_AJ_G0023843.1 mouse_genomes_project 17 50750749 51196866 - MGP_AJ_P0048161 Tbc1d5 protein_coding protein_coding MGP_AJ_T0048148.1 MGP_AJ_G0023839.1 mouse_genomes_project 17 49614072 49757669 + Kif6 protein_coding retained_intron MGP_AJ_T0048149.1 MGP_AJ_G0023839.1 mouse_genomes_project 17 49614075 49676460 + MGP_AJ_P0048149 Kif6 protein_coding nonsense_mediated_decay MGP_AJ_T0048150.1 MGP_AJ_G0023839.1 mouse_genomes_project 17 49614108 49914947 + MGP_AJ_P0048150 Kif6 protein_coding protein_coding MGP_AJ_T0048151.1 MGP_AJ_G0023839.1 mouse_genomes_project 17 49715855 49757669 + Kif6 protein_coding retained_intron MGP_AJ_T0048152.1 MGP_AJ_G0023839.1 mouse_genomes_project 17 49740184 49757671 + Kif6 protein_coding retained_intron MGP_AJ_T0048153.1 MGP_AJ_G0023839.1 mouse_genomes_project 17 49756191 49761297 + Kif6 protein_coding retained_intron MGP_AJ_T0048154.1 MGP_AJ_G0023839.1 mouse_genomes_project 17 49891486 49914947 + Kif6 protein_coding retained_intron MGP_AJ_T0046849.1 MGP_AJ_G0023481.1 mouse_genomes_project 17 32001243 32013802 + MGP_AJ_P0046849 protein_coding protein_coding MGP_AJ_T0013266.1 MGP_AJ_G0011361.1 mouse_genomes_project 17 47902535 47902892 + processed_pseudogene processed_pseudogene MGP_AJ_T0045395.1 MGP_AJ_G0023074.1 mouse_genomes_project 17 2484704 2514108 - MGP_AJ_P0045395 Tmem242 protein_coding protein_coding MGP_AJ_T0045397.1 MGP_AJ_G0023074.1 mouse_genomes_project 17 2506159 2514124 - MGP_AJ_P0045397 Tmem242 protein_coding protein_coding MGP_AJ_T0045398.1 MGP_AJ_G0023074.1 mouse_genomes_project 17 2506889 2514121 - MGP_AJ_P0045398 Tmem242 protein_coding protein_coding MGP_AJ_T0048437.1 MGP_AJ_G0023952.1 mouse_genomes_project 17 68448926 68626843 + L3mbtl4 protein_coding retained_intron MGP_AJ_T0048438.1 MGP_AJ_G0023952.1 mouse_genomes_project 17 68448926 68796565 + MGP_AJ_P0048438 L3mbtl4 protein_coding nonsense_mediated_decay MGP_AJ_T0048439.1 MGP_AJ_G0023952.1 mouse_genomes_project 17 68448926 68807226 + MGP_AJ_P0048439 L3mbtl4 protein_coding protein_coding MGP_AJ_T0048440.1 MGP_AJ_G0023952.1 mouse_genomes_project 17 68448926 68939271 + MGP_AJ_P0048440 L3mbtl4 protein_coding protein_coding MGP_AJ_T0099642.1 MGP_AJ_G0037608.1 mouse_genomes_project 17 12430985 12431049 - Gm23352 snRNA snRNA MGP_AJ_T0006984.1 MGP_AJ_G0005740.1 mouse_genomes_project 17 74863709 74906566 - Gm26749 lincRNA lincRNA MGP_AJ_T0045422.1 MGP_AJ_G0023080.1 mouse_genomes_project 17 3167329 3174080 + MGP_AJ_P0045422 Gtf2h5 protein_coding protein_coding MGP_AJ_T0045423.1 MGP_AJ_G0023080.1 mouse_genomes_project 17 3167380 3169882 + Gtf2h5 protein_coding retained_intron MGP_AJ_T0045424.1 MGP_AJ_G0023080.1 mouse_genomes_project 17 3167473 3172693 + MGP_AJ_P0045424 Gtf2h5 protein_coding protein_coding MGP_AJ_T0048181.1 MGP_AJ_G0023849.1 mouse_genomes_project 17 53580129 53632806 + Kat2b protein_coding processed_transcript MGP_AJ_T0048182.1 MGP_AJ_G0023849.1 mouse_genomes_project 17 53580239 53686204 + MGP_AJ_P0048182 Kat2b protein_coding protein_coding MGP_AJ_T0048183.1 MGP_AJ_G0023849.1 mouse_genomes_project 17 53597611 53647708 + MGP_AJ_P0048183 Kat2b protein_coding protein_coding MGP_AJ_T0048184.1 MGP_AJ_G0023849.1 mouse_genomes_project 17 53653983 53683407 + MGP_AJ_P0048184 Kat2b protein_coding protein_coding MGP_AJ_T0048185.1 MGP_AJ_G0023849.1 mouse_genomes_project 17 53668576 53672997 + Kat2b protein_coding retained_intron MGP_AJ_T0048186.1 MGP_AJ_G0023849.1 mouse_genomes_project 17 53668649 53673020 + Kat2b protein_coding retained_intron MGP_AJ_T0048187.1 MGP_AJ_G0023849.1 mouse_genomes_project 17 53668733 53680033 + MGP_AJ_P0048187 Kat2b protein_coding nonsense_mediated_decay MGP_AJ_T0102381.1 MGP_AJ_G0040123.1 mouse_genomes_project 17 17973388 18033364 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0013279.1 MGP_AJ_G0011374.1 mouse_genomes_project 17 54085782 54086743 + processed_pseudogene processed_pseudogene MGP_AJ_T0048722.1 MGP_AJ_G0024056.1 mouse_genomes_project 17 87441057 87467618 - MGP_AJ_P0048722 Pigf protein_coding protein_coding MGP_AJ_T0098422.1 MGP_AJ_G0036406.1 mouse_genomes_project 17 90972278 90972891 + pseudogene pseudogene MGP_AJ_T0003755.1 MGP_AJ_G0003375.1 mouse_genomes_project 17 34579874 34581340 - Gm19553 antisense antisense MGP_AJ_T0011424.1 MGP_AJ_G0009546.1 mouse_genomes_project 17 35389847 35390165 - Gm22453 misc_RNA misc_RNA MGP_AJ_T0048337.1 MGP_AJ_G0023917.1 mouse_genomes_project 17 57335090 57359217 - MGP_AJ_P0048337 C3 protein_coding protein_coding MGP_AJ_T0048338.1 MGP_AJ_G0023917.1 mouse_genomes_project 17 57335127 57353921 - MGP_AJ_P0048338 C3 protein_coding protein_coding MGP_AJ_T0048339.1 MGP_AJ_G0023917.1 mouse_genomes_project 17 57337338 57359084 - MGP_AJ_P0048339 C3 protein_coding protein_coding MGP_AJ_T0048340.1 MGP_AJ_G0023917.1 mouse_genomes_project 17 57346886 57351070 - C3 protein_coding processed_transcript MGP_AJ_T0048192.1 MGP_AJ_G0023852.1 mouse_genomes_project 17 54046362 54074131 - MGP_AJ_P0048192 Sult1c1 protein_coding protein_coding MGP_AJ_T0006935.1 MGP_AJ_G0005704.1 mouse_genomes_project 17 28024525 28054381 - Gm26885 lincRNA lincRNA MGP_AJ_T0045814.1 MGP_AJ_G0023229.1 mouse_genomes_project 17 22002763 22007404 - MGP_AJ_P0045814 Kremen2 protein_coding protein_coding MGP_AJ_T0099662.1 MGP_AJ_G0037628.1 mouse_genomes_project 17 55718995 55719100 + Gm22654 snRNA snRNA MGP_AJ_T0047157.1 MGP_AJ_G0023545.1 mouse_genomes_project 17 33515009 33525474 - MGP_AJ_P0047157 Ppt2 protein_coding protein_coding MGP_AJ_T0047158.1 MGP_AJ_G0023545.1 mouse_genomes_project 17 33515010 33525416 - MGP_AJ_P0047158 Ppt2 protein_coding protein_coding MGP_AJ_T0047159.1 MGP_AJ_G0023545.1 mouse_genomes_project 17 33515011 33525187 - MGP_AJ_P0047159 Ppt2 protein_coding protein_coding MGP_AJ_T0047160.1 MGP_AJ_G0023545.1 mouse_genomes_project 17 33515576 33525578 - MGP_AJ_P0047160 Ppt2 protein_coding protein_coding MGP_AJ_T0047161.1 MGP_AJ_G0023545.1 mouse_genomes_project 17 33515576 33526092 - MGP_AJ_P0047161 Ppt2 protein_coding protein_coding MGP_AJ_T0047162.1 MGP_AJ_G0023545.1 mouse_genomes_project 17 33515576 33525538 - MGP_AJ_P0047162 Ppt2 protein_coding protein_coding MGP_AJ_T0047163.1 MGP_AJ_G0023545.1 mouse_genomes_project 17 33515661 33524967 - MGP_AJ_P0047163 Ppt2 protein_coding protein_coding MGP_AJ_T0047164.1 MGP_AJ_G0023545.1 mouse_genomes_project 17 33521211 33526563 - MGP_AJ_P0047164 Ppt2 protein_coding protein_coding MGP_AJ_T0047165.1 MGP_AJ_G0023545.1 mouse_genomes_project 17 33521407 33525465 - MGP_AJ_P0047165 Ppt2 protein_coding protein_coding MGP_AJ_T0047166.1 MGP_AJ_G0023545.1 mouse_genomes_project 17 33524527 33525189 - MGP_AJ_P0047166 Ppt2 protein_coding protein_coding MGP_AJ_T0045533.1 MGP_AJ_G0023118.1 mouse_genomes_project 17 10339226 10366101 - MGP_AJ_P0045533 Mas1 protein_coding protein_coding MGP_AJ_T0045534.1 MGP_AJ_G0023118.1 mouse_genomes_project 17 10339262 10352366 - MGP_AJ_P0045534 Mas1 protein_coding protein_coding MGP_AJ_T0045535.1 MGP_AJ_G0023118.1 mouse_genomes_project 17 10339262 10352246 - MGP_AJ_P0045535 Mas1 protein_coding protein_coding MGP_AJ_T0045536.1 MGP_AJ_G0023118.1 mouse_genomes_project 17 10339262 10352366 - MGP_AJ_P0045536 Mas1 protein_coding protein_coding MGP_AJ_T0045537.1 MGP_AJ_G0023118.1 mouse_genomes_project 17 10339262 10346056 - MGP_AJ_P0045537 Mas1 protein_coding protein_coding MGP_AJ_T0045538.1 MGP_AJ_G0023118.1 mouse_genomes_project 17 10340351 10349813 - MGP_AJ_P0045538 Mas1 protein_coding protein_coding MGP_AJ_T0045539.1 MGP_AJ_G0023118.1 mouse_genomes_project 17 10340454 10349799 - MGP_AJ_P0045539 Mas1 protein_coding protein_coding MGP_AJ_T0045540.1 MGP_AJ_G0023118.1 mouse_genomes_project 17 10340465 10349813 - MGP_AJ_P0045540 Mas1 protein_coding protein_coding MGP_AJ_T0045541.1 MGP_AJ_G0023118.1 mouse_genomes_project 17 10340608 10352943 - MGP_AJ_P0045541 Mas1 protein_coding protein_coding MGP_AJ_T0047040.1 MGP_AJ_G0023520.1 mouse_genomes_project 17 32884350 32887232 + MGP_AJ_P0047040 H2-Oa protein_coding protein_coding MGP_AJ_T0047041.1 MGP_AJ_G0023520.1 mouse_genomes_project 17 32884432 32887231 + H2-Oa protein_coding retained_intron MGP_AJ_T0013275.1 MGP_AJ_G0011370.1 mouse_genomes_project 17 53862742 53863089 + processed_pseudogene processed_pseudogene MGP_AJ_T0045696.1 MGP_AJ_G0023171.1 mouse_genomes_project 17 18100946 18127553 - MGP_AJ_P0045696 Vmn2r105 protein_coding protein_coding MGP_AJ_T0048294.1 MGP_AJ_G0023892.1 mouse_genomes_project 17 56787952 56827073 + MGP_AJ_P0048294 Ranbp3 protein_coding protein_coding MGP_AJ_T0045652.1 MGP_AJ_G0023145.1 mouse_genomes_project 17 13406253 13426525 - MGP_AJ_P0045652 Rgmb protein_coding protein_coding MGP_AJ_T0006950.1 MGP_AJ_G0005718.1 mouse_genomes_project 17 34849090 34857774 + 4833427F10Rik lincRNA lincRNA MGP_AJ_T0047279.1 MGP_AJ_G0023566.1 mouse_genomes_project 17 33990822 34000991 + MGP_AJ_P0047279 Vwa7 protein_coding protein_coding MGP_AJ_T0047280.1 MGP_AJ_G0023566.1 mouse_genomes_project 17 33990881 34000765 + MGP_AJ_P0047280 Vwa7 protein_coding protein_coding MGP_AJ_T0045854.1 MGP_AJ_G0023244.1 mouse_genomes_project 17 22340840 22345418 - MGP_AJ_P0045854 Prss22 protein_coding protein_coding MGP_AJ_T0048551.1 MGP_AJ_G0023986.1 mouse_genomes_project 17 74699769 74732468 - MGP_AJ_P0048551 Nlrc4 protein_coding protein_coding MGP_AJ_T0046143.1 MGP_AJ_G0023314.1 mouse_genomes_project 17 23745622 23805450 - MGP_AJ_P0046143 Cacna1h protein_coding protein_coding MGP_AJ_T0046144.1 MGP_AJ_G0023314.1 mouse_genomes_project 17 23745623 23804835 - MGP_AJ_P0046144 Cacna1h protein_coding unknown_likely_coding MGP_AJ_T0046145.1 MGP_AJ_G0023314.1 mouse_genomes_project 17 23745625 23805450 - MGP_AJ_P0046145 Cacna1h protein_coding protein_coding MGP_AJ_T0046146.1 MGP_AJ_G0023314.1 mouse_genomes_project 17 23745632 23805450 - MGP_AJ_P0046146 Cacna1h protein_coding protein_coding MGP_AJ_T0046147.1 MGP_AJ_G0023314.1 mouse_genomes_project 17 23748222 23752668 - MGP_AJ_P0046147 Cacna1h protein_coding protein_coding MGP_AJ_T0046148.1 MGP_AJ_G0023314.1 mouse_genomes_project 17 23748534 23752296 - MGP_AJ_P0046148 Cacna1h protein_coding nonsense_mediated_decay MGP_AJ_T0046149.1 MGP_AJ_G0023314.1 mouse_genomes_project 17 23748889 23750268 - Cacna1h protein_coding retained_intron MGP_AJ_T0046150.1 MGP_AJ_G0023314.1 mouse_genomes_project 17 23760261 23761496 - Cacna1h protein_coding retained_intron MGP_AJ_T0046151.1 MGP_AJ_G0023314.1 mouse_genomes_project 17 23764285 23805435 - Cacna1h protein_coding retained_intron MGP_AJ_T0046152.1 MGP_AJ_G0023314.1 mouse_genomes_project 17 23769665 23804945 - MGP_AJ_P0046152 Cacna1h protein_coding protein_coding MGP_AJ_T0046153.1 MGP_AJ_G0023314.1 mouse_genomes_project 17 23803500 23805450 - Cacna1h protein_coding retained_intron MGP_AJ_T0003742.1 MGP_AJ_G0003366.1 mouse_genomes_project 17 31583650 31584848 + Gm17115 antisense antisense MGP_AJ_T0017538.1 MGP_AJ_G0015310.1 mouse_genomes_project 17 5869237 5920060 + T2 processed_transcript processed_transcript MGP_AJ_T0017539.1 MGP_AJ_G0015310.1 mouse_genomes_project 17 5893422 5920060 + T2 processed_transcript processed_transcript MGP_AJ_T0046883.1 MGP_AJ_G0023491.1 mouse_genomes_project 17 32400832 32408492 + MGP_AJ_P0046883 Pram1 protein_coding protein_coding MGP_AJ_T0046884.1 MGP_AJ_G0023491.1 mouse_genomes_project 17 32400871 32408486 + MGP_AJ_P0046884 Pram1 protein_coding nonsense_mediated_decay MGP_AJ_T0046885.1 MGP_AJ_G0023491.1 mouse_genomes_project 17 32407589 32408415 + Pram1 protein_coding retained_intron MGP_AJ_T0047840.1 MGP_AJ_G0023755.1 mouse_genomes_project 17 45563799 45591304 - MGP_AJ_P0047840 protein_coding unknown_likely_coding MGP_AJ_T0047841.1 MGP_AJ_G0023755.1 mouse_genomes_project 17 45563802 45591369 - MGP_AJ_P0047841 protein_coding protein_coding MGP_AJ_T0047842.1 MGP_AJ_G0023755.1 mouse_genomes_project 17 45566640 45568830 - protein_coding retained_intron MGP_AJ_T0047843.1 MGP_AJ_G0023755.1 mouse_genomes_project 17 45567734 45571568 - protein_coding retained_intron MGP_AJ_T0047844.1 MGP_AJ_G0023755.1 mouse_genomes_project 17 45572827 45591083 - MGP_AJ_P0047844 protein_coding protein_coding MGP_AJ_T0047845.1 MGP_AJ_G0023755.1 mouse_genomes_project 17 45575092 45592015 - MGP_AJ_P0047845 protein_coding protein_coding MGP_AJ_T0047846.1 MGP_AJ_G0023755.1 mouse_genomes_project 17 45578826 45585733 - MGP_AJ_P0047846 protein_coding protein_coding MGP_AJ_T0047847.1 MGP_AJ_G0023755.1 mouse_genomes_project 17 45579056 45591247 - MGP_AJ_P0047847 protein_coding protein_coding MGP_AJ_T0047848.1 MGP_AJ_G0023755.1 mouse_genomes_project 17 45584069 45591230 - MGP_AJ_P0047848 protein_coding protein_coding MGP_AJ_T0047849.1 MGP_AJ_G0023755.1 mouse_genomes_project 17 45591333 45591997 - protein_coding processed_transcript MGP_AJ_T0006921.1 MGP_AJ_G0005694.1 mouse_genomes_project 17 25265794 25302084 + Gm20468 lincRNA lincRNA MGP_AJ_T0102423.1 MGP_AJ_G0040165.1 mouse_genomes_project 17 35787164 35787311 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0048299.1 MGP_AJ_G0023896.1 mouse_genomes_project 17 56881869 56887010 + MGP_AJ_P0048299 Dus3l protein_coding protein_coding MGP_AJ_T0100940.1 MGP_AJ_G0038906.1 mouse_genomes_project 17 87929584 87929718 - Gm26005 snoRNA snoRNA MGP_AJ_T0102386.1 MGP_AJ_G0040128.1 mouse_genomes_project 17 18851438 18852377 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0048030.1 MGP_AJ_G0023810.1 mouse_genomes_project 17 47562320 47602373 + Gm20517 protein_coding retained_intron MGP_AJ_T0048031.1 MGP_AJ_G0023810.1 mouse_genomes_project 17 47562329 47603697 + Gm20517 protein_coding retained_intron MGP_AJ_T0048033.1 MGP_AJ_G0023810.1 mouse_genomes_project 17 47562344 47635823 + MGP_AJ_P0048033 Gm20517 protein_coding nonsense_mediated_decay MGP_AJ_T0045399.1 MGP_AJ_G0023076.1 mouse_genomes_project 17 2566476 2833249 + MGP_AJ_P0045399 Zdhhc14 protein_coding protein_coding MGP_AJ_T0102409.1 MGP_AJ_G0040151.1 mouse_genomes_project 17 34152661 34156777 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0047143.1 MGP_AJ_G0023543.1 mouse_genomes_project 17 33502600 33510053 + MGP_AJ_P0047143 Agpat1 protein_coding protein_coding MGP_AJ_T0047144.1 MGP_AJ_G0023543.1 mouse_genomes_project 17 33503182 33509752 + MGP_AJ_P0047144 Agpat1 protein_coding protein_coding MGP_AJ_T0047145.1 MGP_AJ_G0023543.1 mouse_genomes_project 17 33504202 33511797 + MGP_AJ_P0047145 Agpat1 protein_coding protein_coding MGP_AJ_T0047146.1 MGP_AJ_G0023543.1 mouse_genomes_project 17 33504202 33510799 + MGP_AJ_P0047146 Agpat1 protein_coding nonsense_mediated_decay MGP_AJ_T0047147.1 MGP_AJ_G0023543.1 mouse_genomes_project 17 33504314 33511247 + MGP_AJ_P0047147 Agpat1 protein_coding nonsense_mediated_decay MGP_AJ_T0047148.1 MGP_AJ_G0023543.1 mouse_genomes_project 17 33507355 33511796 + MGP_AJ_P0047148 Agpat1 protein_coding protein_coding MGP_AJ_T0047149.1 MGP_AJ_G0023543.1 mouse_genomes_project 17 33507960 33511766 + MGP_AJ_P0047149 Agpat1 protein_coding protein_coding MGP_AJ_T0047150.1 MGP_AJ_G0023543.1 mouse_genomes_project 17 33508615 33509533 + Agpat1 protein_coding retained_intron MGP_AJ_T0046844.1 MGP_AJ_G0023479.1 mouse_genomes_project 17 31884764 31902006 + MGP_AJ_P0046844 Zfp563 protein_coding protein_coding MGP_AJ_T0046845.1 MGP_AJ_G0023479.1 mouse_genomes_project 17 31885018 31900527 + MGP_AJ_P0046845 Zfp563 protein_coding protein_coding MGP_AJ_T0046846.1 MGP_AJ_G0023479.1 mouse_genomes_project 17 31887893 31900861 + MGP_AJ_P0046846 Zfp563 protein_coding protein_coding MGP_AJ_T0045558.1 MGP_AJ_G0023123.1 mouse_genomes_project 17 10425423 10446409 - MGP_AJ_P0045558 Acat3 protein_coding protein_coding MGP_AJ_T0045559.1 MGP_AJ_G0023123.1 mouse_genomes_project 17 10425632 10446362 - MGP_AJ_P0045559 Acat3 protein_coding protein_coding MGP_AJ_T0045560.1 MGP_AJ_G0023123.1 mouse_genomes_project 17 10426327 10429273 - Acat3 protein_coding retained_intron MGP_AJ_T0006925.1 MGP_AJ_G0005698.1 mouse_genomes_project 17 27005991 27006759 - Gm20109 lincRNA lincRNA MGP_AJ_T0046235.1 MGP_AJ_G0023336.1 mouse_genomes_project 17 24217671 24234280 - Wdr90 protein_coding retained_intron MGP_AJ_T0046236.1 MGP_AJ_G0023336.1 mouse_genomes_project 17 24217671 24234372 - MGP_AJ_P0046236 Wdr90 protein_coding protein_coding MGP_AJ_T0046237.1 MGP_AJ_G0023336.1 mouse_genomes_project 17 24217673 24234365 - Wdr90 protein_coding retained_intron MGP_AJ_T0046238.1 MGP_AJ_G0023336.1 mouse_genomes_project 17 24217968 24234398 - MGP_AJ_P0046238 Wdr90 protein_coding protein_coding MGP_AJ_T0046239.1 MGP_AJ_G0023336.1 mouse_genomes_project 17 24218288 24219395 - Wdr90 protein_coding retained_intron MGP_AJ_T0046240.1 MGP_AJ_G0023336.1 mouse_genomes_project 17 24221469 24224661 - Wdr90 protein_coding retained_intron MGP_AJ_T0046241.1 MGP_AJ_G0023336.1 mouse_genomes_project 17 24222853 24224768 - Wdr90 protein_coding retained_intron MGP_AJ_T0046242.1 MGP_AJ_G0023336.1 mouse_genomes_project 17 24224811 24226791 - Wdr90 protein_coding retained_intron MGP_AJ_T0046243.1 MGP_AJ_G0023336.1 mouse_genomes_project 17 24226235 24234372 - Wdr90 protein_coding retained_intron MGP_AJ_T0046244.1 MGP_AJ_G0023336.1 mouse_genomes_project 17 24226725 24228195 - Wdr90 protein_coding retained_intron MGP_AJ_T0046245.1 MGP_AJ_G0023336.1 mouse_genomes_project 17 24228679 24232123 - MGP_AJ_P0046245 Wdr90 protein_coding protein_coding MGP_AJ_T0048411.1 MGP_AJ_G0023944.1 mouse_genomes_project 17 66253146 66296538 + MGP_AJ_P0048411 Ddx11 protein_coding protein_coding MGP_AJ_T0048412.1 MGP_AJ_G0023944.1 mouse_genomes_project 17 66253304 66280934 + MGP_AJ_P0048412 Ddx11 protein_coding unknown_likely_coding MGP_AJ_T0047935.1 MGP_AJ_G0023773.1 mouse_genomes_project 17 46352357 46358714 - MGP_AJ_P0047935 Slc22a7 protein_coding protein_coding MGP_AJ_T0046538.1 MGP_AJ_G0023403.1 mouse_genomes_project 17 27061209 27069083 + MGP_AJ_P0046538 Lhfpl5 protein_coding protein_coding MGP_AJ_T0047766.1 MGP_AJ_G0023736.1 mouse_genomes_project 17 43538107 43563523 - MGP_AJ_P0047766 Slc25a27 protein_coding protein_coding MGP_AJ_T0047519.1 MGP_AJ_G0023616.1 mouse_genomes_project 17 34993459 35000029 - MGP_AJ_P0047519 protein_coding unknown_likely_coding MGP_AJ_T0047520.1 MGP_AJ_G0023616.1 mouse_genomes_project 17 34994288 34999705 - MGP_AJ_P0047520 protein_coding protein_coding MGP_AJ_T0047521.1 MGP_AJ_G0023616.1 mouse_genomes_project 17 34994818 34999691 - MGP_AJ_P0047521 protein_coding protein_coding MGP_AJ_T0047522.1 MGP_AJ_G0023616.1 mouse_genomes_project 17 34997166 34999745 - protein_coding retained_intron MGP_AJ_T0047523.1 MGP_AJ_G0023616.1 mouse_genomes_project 17 34997932 34999571 - protein_coding processed_transcript MGP_AJ_T0045388.1 MGP_AJ_G0023071.1 mouse_genomes_project 17 614705 615365 + MGP_AJ_P0045388 Cldn20 protein_coding protein_coding MGP_AJ_T0047767.1 MGP_AJ_G0023737.1 mouse_genomes_project 17 43563921 43644339 + MGP_AJ_P0047767 Cyp39a1 protein_coding protein_coding MGP_AJ_T0045719.1 MGP_AJ_G0023188.1 mouse_genomes_project 17 18922358 18940319 + MGP_AJ_P0045719 Zfp160 protein_coding unknown_likely_coding MGP_AJ_T0045766.1 MGP_AJ_G0023214.1 mouse_genomes_project 17 21036733 21062396 - MGP_AJ_P0045766 Zfp945 protein_coding protein_coding MGP_AJ_T0045767.1 MGP_AJ_G0023214.1 mouse_genomes_project 17 21039059 21056976 - Zfp945 protein_coding retained_intron MGP_AJ_T0045768.1 MGP_AJ_G0023214.1 mouse_genomes_project 17 21039059 21062396 - MGP_AJ_P0045768 Zfp945 protein_coding protein_coding MGP_AJ_T0045769.1 MGP_AJ_G0023214.1 mouse_genomes_project 17 21042482 21062365 - MGP_AJ_P0045769 Zfp945 protein_coding protein_coding MGP_AJ_T0045770.1 MGP_AJ_G0023214.1 mouse_genomes_project 17 21056983 21062396 - Zfp945 protein_coding retained_intron MGP_AJ_T0046390.1 MGP_AJ_G0023370.1 mouse_genomes_project 17 25404595 25407634 + MGP_AJ_P0046390 Zbtb9 protein_coding protein_coding MGP_AJ_T0098624.1 MGP_AJ_G0036608.1 mouse_genomes_project 17 79195351 79195470 + n-R5s29 rRNA rRNA MGP_AJ_T0010180.1 MGP_AJ_G0008302.1 mouse_genomes_project 17 24153621 24153693 + Mir6966 miRNA miRNA MGP_AJ_T0047470.1 MGP_AJ_G0023609.1 mouse_genomes_project 17 34913768 34918145 - MGP_AJ_P0047470 Tubb5 protein_coding protein_coding MGP_AJ_T0047471.1 MGP_AJ_G0023609.1 mouse_genomes_project 17 34915438 34916894 - Tubb5 protein_coding retained_intron MGP_AJ_T0047472.1 MGP_AJ_G0023609.1 mouse_genomes_project 17 34915734 34918047 - MGP_AJ_P0047472 Tubb5 protein_coding protein_coding MGP_AJ_T0047473.1 MGP_AJ_G0023609.1 mouse_genomes_project 17 34916080 34918056 - Tubb5 protein_coding retained_intron MGP_AJ_T0003738.1 MGP_AJ_G0003364.1 mouse_genomes_project 17 29245766 29260433 - antisense antisense MGP_AJ_T0046829.1 MGP_AJ_G0023474.1 mouse_genomes_project 17 31723762 31748436 - MGP_AJ_P0046829 Cyp4f13 protein_coding protein_coding MGP_AJ_T0046830.1 MGP_AJ_G0023474.1 mouse_genomes_project 17 31723775 31748413 - MGP_AJ_P0046830 Cyp4f13 protein_coding protein_coding MGP_AJ_T0046831.1 MGP_AJ_G0023474.1 mouse_genomes_project 17 31723790 31748400 - MGP_AJ_P0046831 Cyp4f13 protein_coding nonsense_mediated_decay MGP_AJ_T0046832.1 MGP_AJ_G0023474.1 mouse_genomes_project 17 31724400 31724954 - Cyp4f13 protein_coding retained_intron MGP_AJ_T0046833.1 MGP_AJ_G0023474.1 mouse_genomes_project 17 31731475 31748436 - MGP_AJ_P0046833 Cyp4f13 protein_coding nonsense_mediated_decay MGP_AJ_T0046834.1 MGP_AJ_G0023474.1 mouse_genomes_project 17 31731687 31748394 - MGP_AJ_P0046834 Cyp4f13 protein_coding nonsense_mediated_decay MGP_AJ_T0046835.1 MGP_AJ_G0023474.1 mouse_genomes_project 17 31740855 31748425 - Cyp4f13 protein_coding retained_intron MGP_AJ_T0100915.1 MGP_AJ_G0038881.1 mouse_genomes_project 17 22369472 22369601 - Gm25092 snoRNA snoRNA MGP_AJ_T0048229.1 MGP_AJ_G0023871.1 mouse_genomes_project 17 56156360 56177912 + MGP_AJ_P0048229 Hdgfrp2 protein_coding protein_coding MGP_AJ_T0048230.1 MGP_AJ_G0023871.1 mouse_genomes_project 17 56156389 56177892 + MGP_AJ_P0048230 Hdgfrp2 protein_coding unknown_likely_coding MGP_AJ_T0098826.1 MGP_AJ_G0036810.1 mouse_genomes_project 17 4497025 4497113 - Gm22416 scaRNA scaRNA MGP_AJ_T0017564.1 MGP_AJ_G0015325.1 mouse_genomes_project 17 33924237 33925244 - 1110038B12Rik processed_transcript retained_intron MGP_AJ_T0017565.1 MGP_AJ_G0015325.1 mouse_genomes_project 17 33924240 33926456 - 1110038B12Rik processed_transcript retained_intron MGP_AJ_T0017566.1 MGP_AJ_G0015325.1 mouse_genomes_project 17 33924240 33926448 - 1110038B12Rik processed_transcript lincRNA MGP_AJ_T0017567.1 MGP_AJ_G0015325.1 mouse_genomes_project 17 33924240 33926471 - 1110038B12Rik processed_transcript lincRNA MGP_AJ_T0017568.1 MGP_AJ_G0015325.1 mouse_genomes_project 17 33924241 33926434 - 1110038B12Rik processed_transcript retained_intron MGP_AJ_T0017569.1 MGP_AJ_G0015325.1 mouse_genomes_project 17 33924242 33926468 - 1110038B12Rik processed_transcript lincRNA MGP_AJ_T0017570.1 MGP_AJ_G0015325.1 mouse_genomes_project 17 33925445 33926468 - 1110038B12Rik processed_transcript retained_intron MGP_AJ_T0017571.1 MGP_AJ_G0015325.1 mouse_genomes_project 17 33925593 33926462 - 1110038B12Rik processed_transcript retained_intron MGP_AJ_T0013262.1 MGP_AJ_G0011357.1 mouse_genomes_project 17 37753800 37754481 - processed_pseudogene processed_pseudogene MGP_AJ_T0006905.1 MGP_AJ_G0005681.1 mouse_genomes_project 17 12823545 12832744 - Gm5091 lincRNA lincRNA MGP_AJ_T0046841.1 MGP_AJ_G0023477.1 mouse_genomes_project 17 31820535 31838391 - MGP_AJ_P0046841 Zfp763 protein_coding protein_coding MGP_AJ_T0046842.1 MGP_AJ_G0023477.1 mouse_genomes_project 17 31823434 31838157 - Zfp763 protein_coding processed_transcript MGP_AJ_T0048668.1 MGP_AJ_G0024033.1 mouse_genomes_project 17 83940213 83986450 - MGP_AJ_P0048668 Kcng3 protein_coding protein_coding MGP_AJ_T0048590.1 MGP_AJ_G0023994.1 mouse_genomes_project 17 78707721 78748398 - MGP_AJ_P0048590 Fez2 protein_coding protein_coding MGP_AJ_T0048591.1 MGP_AJ_G0023994.1 mouse_genomes_project 17 78707721 78748398 - MGP_AJ_P0048591 Fez2 protein_coding protein_coding MGP_AJ_T0046170.1 MGP_AJ_G0023319.1 mouse_genomes_project 17 24087726 24089962 + MGP_AJ_P0046170 Gng13 protein_coding protein_coding MGP_AJ_T0046171.1 MGP_AJ_G0023319.1 mouse_genomes_project 17 24088083 24089643 + MGP_AJ_P0046171 Gng13 protein_coding protein_coding MGP_AJ_T0046010.1 MGP_AJ_G0023284.1 mouse_genomes_project 17 23211230 23212636 - MGP_AJ_P0046010 Fahd1 protein_coding protein_coding MGP_AJ_T0046448.1 MGP_AJ_G0023385.1 mouse_genomes_project 17 26215728 26285068 - MGP_AJ_P0046448 D17Wsu92e protein_coding protein_coding MGP_AJ_T0046449.1 MGP_AJ_G0023385.1 mouse_genomes_project 17 26215742 26285001 - MGP_AJ_P0046449 D17Wsu92e protein_coding protein_coding MGP_AJ_T0046450.1 MGP_AJ_G0023385.1 mouse_genomes_project 17 26231993 26285052 - MGP_AJ_P0046450 D17Wsu92e protein_coding protein_coding MGP_AJ_T0047700.1 MGP_AJ_G0023694.1 mouse_genomes_project 17 37375071 37376012 - MGP_AJ_P0047700 Olfr132 protein_coding protein_coding MGP_AJ_T0046155.1 MGP_AJ_G0023316.1 mouse_genomes_project 17 23862486 23869903 - MGP_AJ_P0046155 Sstr5 protein_coding protein_coding MGP_AJ_T0046156.1 MGP_AJ_G0023316.1 mouse_genomes_project 17 23862486 23869903 - MGP_AJ_P0046156 Sstr5 protein_coding protein_coding MGP_AJ_T0102425.1 MGP_AJ_G0040167.1 mouse_genomes_project 17 35891160 35891589 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0047695.1 MGP_AJ_G0023691.1 mouse_genomes_project 17 37197523 37198592 - MGP_AJ_P0047695 Olfr761 protein_coding protein_coding MGP_AJ_T0046108.1 MGP_AJ_G0023305.1 mouse_genomes_project 17 23610778 23613400 + MGP_AJ_P0046108 Tsr3 protein_coding protein_coding MGP_AJ_T0048331.1 MGP_AJ_G0023911.1 mouse_genomes_project 17 57192587 57205039 - MGP_AJ_P0048331 Dennd1c protein_coding protein_coding MGP_AJ_T0048549.1 MGP_AJ_G0023985.1 mouse_genomes_project 17 74667072 74697155 + MGP_AJ_P0048549 Slc30a6 protein_coding protein_coding MGP_AJ_T0048550.1 MGP_AJ_G0023985.1 mouse_genomes_project 17 74667072 74697155 + MGP_AJ_P0048550 Slc30a6 protein_coding protein_coding MGP_AJ_T0047799.1 MGP_AJ_G0023748.1 mouse_genomes_project 17 45443648 45451311 - MGP_AJ_P0047799 Tmem151b protein_coding protein_coding MGP_AJ_T0013239.1 MGP_AJ_G0011334.1 mouse_genomes_project 17 35287956 35288502 + processed_pseudogene processed_pseudogene MGP_AJ_T0047939.1 MGP_AJ_G0023776.1 mouse_genomes_project 17 46417700 46420530 + MGP_AJ_P0047939 Dnph1 protein_coding protein_coding MGP_AJ_T0047480.1 MGP_AJ_G0023612.1 mouse_genomes_project 17 34945232 34955701 + MGP_AJ_P0047480 Ppp1r18 protein_coding protein_coding MGP_AJ_T0047481.1 MGP_AJ_G0023612.1 mouse_genomes_project 17 34945264 34955602 + MGP_AJ_P0047481 Ppp1r18 protein_coding protein_coding MGP_AJ_T0047482.1 MGP_AJ_G0023612.1 mouse_genomes_project 17 34945695 34955706 + MGP_AJ_P0047482 Ppp1r18 protein_coding protein_coding MGP_AJ_T0047483.1 MGP_AJ_G0023612.1 mouse_genomes_project 17 34946254 34955706 + MGP_AJ_P0047483 Ppp1r18 protein_coding protein_coding MGP_AJ_T0047484.1 MGP_AJ_G0023612.1 mouse_genomes_project 17 34946299 34955697 + MGP_AJ_P0047484 Ppp1r18 protein_coding protein_coding MGP_AJ_T0047485.1 MGP_AJ_G0023612.1 mouse_genomes_project 17 34948042 34955704 + MGP_AJ_P0047485 Ppp1r18 protein_coding protein_coding MGP_AJ_T0048690.1 MGP_AJ_G0024042.1 mouse_genomes_project 17 85094790 85180923 - MGP_AJ_P0048690 Lrpprc protein_coding protein_coding MGP_AJ_T0048691.1 MGP_AJ_G0024042.1 mouse_genomes_project 17 85103282 85121683 - Lrpprc protein_coding processed_transcript MGP_AJ_T0048692.1 MGP_AJ_G0024042.1 mouse_genomes_project 17 85121678 85141628 - MGP_AJ_P0048692 Lrpprc protein_coding nonsense_mediated_decay MGP_AJ_T0048693.1 MGP_AJ_G0024042.1 mouse_genomes_project 17 85139146 85141628 - Lrpprc protein_coding retained_intron MGP_AJ_T0048694.1 MGP_AJ_G0024042.1 mouse_genomes_project 17 85156778 85181154 - Lrpprc protein_coding retained_intron MGP_AJ_T0048695.1 MGP_AJ_G0024042.1 mouse_genomes_project 17 85157939 85180927 - Lrpprc protein_coding retained_intron MGP_AJ_T0048696.1 MGP_AJ_G0024042.1 mouse_genomes_project 17 85160787 85167908 - Lrpprc protein_coding processed_transcript MGP_AJ_T0045844.1 MGP_AJ_G0023239.1 mouse_genomes_project 17 22184311 22202088 + MGP_AJ_P0045844 protein_coding protein_coding MGP_AJ_T0047755.1 MGP_AJ_G0023733.1 mouse_genomes_project 17 43426998 43437120 - MGP_AJ_P0047755 Ankrd66 protein_coding protein_coding MGP_AJ_T0047078.1 MGP_AJ_G0023528.1 mouse_genomes_project 17 33068672 33076883 + MGP_AJ_P0047078 H2-Ob protein_coding protein_coding MGP_AJ_T0047079.1 MGP_AJ_G0023528.1 mouse_genomes_project 17 33068674 33072459 + H2-Ob protein_coding retained_intron MGP_AJ_T0047080.1 MGP_AJ_G0023528.1 mouse_genomes_project 17 33068700 33076774 + MGP_AJ_P0047080 H2-Ob protein_coding protein_coding MGP_AJ_T0047081.1 MGP_AJ_G0023528.1 mouse_genomes_project 17 33070978 33075366 + MGP_AJ_P0047081 H2-Ob protein_coding protein_coding MGP_AJ_T0017581.1 MGP_AJ_G0015329.1 mouse_genomes_project 17 71776228 71818434 - Trmt61b processed_transcript processed_transcript MGP_AJ_T0017582.1 MGP_AJ_G0015329.1 mouse_genomes_project 17 71776263 71818425 - Trmt61b processed_transcript processed_transcript MGP_AJ_T0017583.1 MGP_AJ_G0015329.1 mouse_genomes_project 17 71807503 71817932 - Trmt61b processed_transcript processed_transcript MGP_AJ_T0013305.1 MGP_AJ_G0011400.1 mouse_genomes_project 17 93056270 93060644 - processed_pseudogene processed_pseudogene MGP_AJ_T0006959.1 MGP_AJ_G0005726.1 mouse_genomes_project 17 46391947 46759588 + lincRNA lincRNA MGP_AJ_T0102370.1 MGP_AJ_G0040112.1 mouse_genomes_project 17 16397273 17129444 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0047605.1 MGP_AJ_G0023644.1 mouse_genomes_project 17 36077775 36089677 + MGP_AJ_P0047605 Trim31 protein_coding protein_coding MGP_AJ_T0013267.1 MGP_AJ_G0011362.1 mouse_genomes_project 17 47975044 47975238 - processed_pseudogene processed_pseudogene MGP_AJ_T0006956.1 MGP_AJ_G0005724.1 mouse_genomes_project 17 45641209 45687373 + lincRNA lincRNA MGP_AJ_T0006957.1 MGP_AJ_G0005724.1 mouse_genomes_project 17 45663289 45694491 + lincRNA lincRNA MGP_AJ_T0047725.1 MGP_AJ_G0023715.1 mouse_genomes_project 17 40479549 40483574 + MGP_AJ_P0047725 Esp4 protein_coding protein_coding MGP_AJ_T0047723.1 MGP_AJ_G0023713.1 mouse_genomes_project 17 40443279 40447400 + MGP_AJ_P0047723 Esp6 protein_coding protein_coding MGP_AJ_T0047458.1 MGP_AJ_G0023607.1 mouse_genomes_project 17 34900530 34901770 + MGP_AJ_P0047458 Ier3 protein_coding protein_coding MGP_AJ_T0047756.1 MGP_AJ_G0023734.1 mouse_genomes_project 17 43462258 43496214 + MGP_AJ_P0047756 Pla2g7 protein_coding protein_coding MGP_AJ_T0047757.1 MGP_AJ_G0023734.1 mouse_genomes_project 17 43462429 43507701 + MGP_AJ_P0047757 Pla2g7 protein_coding protein_coding MGP_AJ_T0047758.1 MGP_AJ_G0023734.1 mouse_genomes_project 17 43462635 43490415 + MGP_AJ_P0047758 Pla2g7 protein_coding protein_coding MGP_AJ_T0047759.1 MGP_AJ_G0023734.1 mouse_genomes_project 17 43462795 43485297 + Pla2g7 protein_coding processed_transcript MGP_AJ_T0047760.1 MGP_AJ_G0023734.1 mouse_genomes_project 17 43462833 43502752 + MGP_AJ_P0047760 Pla2g7 protein_coding protein_coding MGP_AJ_T0047761.1 MGP_AJ_G0023734.1 mouse_genomes_project 17 43462875 43503127 + Pla2g7 protein_coding retained_intron MGP_AJ_T0048763.1 MGP_AJ_G0024069.1 mouse_genomes_project 17 88962284 89000699 + Foxn2 protein_coding retained_intron MGP_AJ_T0048764.1 MGP_AJ_G0024069.1 mouse_genomes_project 17 88962284 89013154 + MGP_AJ_P0048764 Foxn2 protein_coding protein_coding MGP_AJ_T0048765.1 MGP_AJ_G0024069.1 mouse_genomes_project 17 88962284 88985813 + MGP_AJ_P0048765 Foxn2 protein_coding protein_coding MGP_AJ_T0048766.1 MGP_AJ_G0024069.1 mouse_genomes_project 17 88962299 89009873 + MGP_AJ_P0048766 Foxn2 protein_coding nonsense_mediated_decay MGP_AJ_T0010195.1 MGP_AJ_G0008317.1 mouse_genomes_project 17 31156665 31156724 + Gm22201 miRNA miRNA MGP_AJ_T0046827.1 MGP_AJ_G0023473.1 mouse_genomes_project 17 31703941 31716108 - MGP_AJ_P0046827 Cyp4f14 protein_coding protein_coding MGP_AJ_T0046828.1 MGP_AJ_G0023473.1 mouse_genomes_project 17 31703941 31715853 - MGP_AJ_P0046828 Cyp4f14 protein_coding protein_coding MGP_AJ_T0045902.1 MGP_AJ_G0023254.1 mouse_genomes_project 17 22578646 22605826 - MGP_AJ_P0045902 Ccnf protein_coding protein_coding MGP_AJ_T0045835.1 MGP_AJ_G0023235.1 mouse_genomes_project 17 22107849 22115208 - MGP_AJ_P0045835 Prss41 protein_coding protein_coding MGP_AJ_T0045836.1 MGP_AJ_G0023235.1 mouse_genomes_project 17 22107849 22115191 - MGP_AJ_P0045836 Prss41 protein_coding protein_coding MGP_AJ_T0045837.1 MGP_AJ_G0023235.1 mouse_genomes_project 17 22112149 22115208 - MGP_AJ_P0045837 Prss41 protein_coding protein_coding MGP_AJ_T0045838.1 MGP_AJ_G0023235.1 mouse_genomes_project 17 22113278 22115185 - Prss41 protein_coding retained_intron MGP_AJ_T0045842.1 MGP_AJ_G0023237.1 mouse_genomes_project 17 22138513 22143542 + MGP_AJ_P0045842 Prss21 protein_coding protein_coding MGP_AJ_T0045563.1 MGP_AJ_G0023125.1 mouse_genomes_project 17 10473893 10505853 - MGP_AJ_P0045563 protein_coding protein_coding MGP_AJ_T0045564.1 MGP_AJ_G0023125.1 mouse_genomes_project 17 10473896 10500315 - MGP_AJ_P0045564 protein_coding protein_coding MGP_AJ_T0045565.1 MGP_AJ_G0023125.1 mouse_genomes_project 17 10479790 10500248 - MGP_AJ_P0045565 protein_coding protein_coding MGP_AJ_T0045566.1 MGP_AJ_G0023125.1 mouse_genomes_project 17 10480657 10505902 - MGP_AJ_P0045566 protein_coding protein_coding MGP_AJ_T0045567.1 MGP_AJ_G0023125.1 mouse_genomes_project 17 10488866 10494308 - MGP_AJ_P0045567 protein_coding protein_coding MGP_AJ_T0045568.1 MGP_AJ_G0023125.1 mouse_genomes_project 17 10489844 10492039 - protein_coding processed_transcript MGP_AJ_T0010217.1 MGP_AJ_G0008339.1 mouse_genomes_project 17 57348270 57348327 - Mir6978 miRNA miRNA MGP_AJ_T0013238.1 MGP_AJ_G0011333.1 mouse_genomes_project 17 35020984 35021311 - processed_pseudogene processed_pseudogene MGP_AJ_T0003704.1 MGP_AJ_G0003342.1 mouse_genomes_project 17 4101985 4104638 + antisense antisense MGP_AJ_T0099672.1 MGP_AJ_G0037638.1 mouse_genomes_project 17 84677170 84677277 - Gm24492 snRNA snRNA MGP_AJ_T0046807.1 MGP_AJ_G0023466.1 mouse_genomes_project 17 31305905 31428366 + MGP_AJ_P0046807 Cyp4f37 protein_coding protein_coding MGP_AJ_T0003774.1 MGP_AJ_G0003391.1 mouse_genomes_project 17 47651936 47653962 - Frs3os antisense antisense MGP_AJ_T0003775.1 MGP_AJ_G0003391.1 mouse_genomes_project 17 47652005 47652795 - Frs3os antisense antisense MGP_AJ_T0003776.1 MGP_AJ_G0003391.1 mouse_genomes_project 17 47652288 47653945 - Frs3os antisense antisense MGP_AJ_T0013284.1 MGP_AJ_G0011379.1 mouse_genomes_project 17 68017881 68018819 - processed_pseudogene processed_pseudogene MGP_AJ_T0047654.1 MGP_AJ_G0023654.1 mouse_genomes_project 17 36271550 36272205 - MGP_AJ_P0047654 Olfr90 protein_coding protein_coding MGP_AJ_T0006944.1 MGP_AJ_G0005712.1 mouse_genomes_project 17 33079968 33081170 + Gm20506 lincRNA lincRNA MGP_AJ_T0047655.1 MGP_AJ_G0023655.1 mouse_genomes_project 17 36279252 36280191 - MGP_AJ_P0047655 Olfr91 protein_coding protein_coding MGP_AJ_T0098932.1 MGP_AJ_G0036911.1 mouse_genomes_project 17 63414347 63421873 - 4930405O22Rik sense_intronic sense_intronic MGP_AJ_T0098933.1 MGP_AJ_G0036911.1 mouse_genomes_project 17 63414580 63421875 - 4930405O22Rik sense_intronic sense_intronic MGP_AJ_T0046876.1 MGP_AJ_G0023490.1 mouse_genomes_project 17 32391862 32394555 + MGP_AJ_P0046876 Zfp414 protein_coding protein_coding MGP_AJ_T0046877.1 MGP_AJ_G0023490.1 mouse_genomes_project 17 32391862 32394492 + MGP_AJ_P0046877 Zfp414 protein_coding protein_coding MGP_AJ_T0046878.1 MGP_AJ_G0023490.1 mouse_genomes_project 17 32391873 32393733 + Zfp414 protein_coding retained_intron MGP_AJ_T0046879.1 MGP_AJ_G0023490.1 mouse_genomes_project 17 32391893 32394240 + MGP_AJ_P0046879 Zfp414 protein_coding protein_coding MGP_AJ_T0046880.1 MGP_AJ_G0023490.1 mouse_genomes_project 17 32391986 32394496 + MGP_AJ_P0046880 Zfp414 protein_coding protein_coding MGP_AJ_T0046881.1 MGP_AJ_G0023490.1 mouse_genomes_project 17 32392973 32393547 + Zfp414 protein_coding retained_intron MGP_AJ_T0046882.1 MGP_AJ_G0023490.1 mouse_genomes_project 17 32393864 32394466 + Zfp414 protein_coding retained_intron MGP_AJ_T0046290.1 MGP_AJ_G0023347.1 mouse_genomes_project 17 24468520 24477626 - MGP_AJ_P0046290 Decr2 protein_coding protein_coding MGP_AJ_T0046291.1 MGP_AJ_G0023347.1 mouse_genomes_project 17 24470195 24471228 - Decr2 protein_coding processed_transcript MGP_AJ_T0046292.1 MGP_AJ_G0023347.1 mouse_genomes_project 17 24470944 24477626 - Decr2 protein_coding retained_intron MGP_AJ_T0046293.1 MGP_AJ_G0023347.1 mouse_genomes_project 17 24471401 24477616 - Decr2 protein_coding processed_transcript MGP_AJ_T0046294.1 MGP_AJ_G0023347.1 mouse_genomes_project 17 24474746 24477655 - Decr2 protein_coding processed_transcript MGP_AJ_T0006996.1 MGP_AJ_G0005749.1 mouse_genomes_project 17 87971905 87983763 + Gm28676 lincRNA lincRNA MGP_AJ_T0048780.1 MGP_AJ_G0024072.1 mouse_genomes_project 17 89192319 89239332 + MGP_AJ_P0048780 Gtf2a1l protein_coding protein_coding MGP_AJ_T0048781.1 MGP_AJ_G0024072.1 mouse_genomes_project 17 89192355 89219165 + MGP_AJ_P0048781 Gtf2a1l protein_coding protein_coding MGP_AJ_T0047606.1 MGP_AJ_G0023645.1 mouse_genomes_project 17 36122205 36127258 + MGP_AJ_P0047606 Rnf39 protein_coding protein_coding MGP_AJ_T0047607.1 MGP_AJ_G0023645.1 mouse_genomes_project 17 36122342 36124887 + MGP_AJ_P0047607 Rnf39 protein_coding protein_coding MGP_AJ_T0047608.1 MGP_AJ_G0023645.1 mouse_genomes_project 17 36124349 36126558 + MGP_AJ_P0047608 Rnf39 protein_coding protein_coding MGP_AJ_T0101752.1 MGP_AJ_G0039682.1 mouse_genomes_project 17 88636733 88642228 + transcribed_processed_pseudogene processed_transcript MGP_AJ_T0101753.1 MGP_AJ_G0039682.1 mouse_genomes_project 17 88641936 88642335 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0047694.1 MGP_AJ_G0023690.1 mouse_genomes_project 17 37197426 37198591 - MGP_AJ_P0047694 protein_coding protein_coding MGP_AJ_T0046953.1 MGP_AJ_G0023504.1 mouse_genomes_project 17 32698424 32699658 + MGP_AJ_P0046953 Zbtb22 protein_coding protein_coding MGP_AJ_T0046954.1 MGP_AJ_G0023504.1 mouse_genomes_project 17 32698691 32701840 + MGP_AJ_P0046954 Zbtb22 protein_coding protein_coding MGP_AJ_T0047393.1 MGP_AJ_G0023593.1 mouse_genomes_project 17 34299403 34303824 + MGP_AJ_P0047393 H2-Q1 protein_coding protein_coding MGP_AJ_T0048343.1 MGP_AJ_G0023920.1 mouse_genomes_project 17 57411725 57460401 + MGP_AJ_P0048343 Vav1 protein_coding protein_coding MGP_AJ_T0048344.1 MGP_AJ_G0023920.1 mouse_genomes_project 17 57411725 57460482 + MGP_AJ_P0048344 Vav1 protein_coding protein_coding MGP_AJ_T0048345.1 MGP_AJ_G0023920.1 mouse_genomes_project 17 57411752 57460406 + MGP_AJ_P0048345 Vav1 protein_coding protein_coding MGP_AJ_T0048346.1 MGP_AJ_G0023920.1 mouse_genomes_project 17 57435665 57437937 + Vav1 protein_coding retained_intron MGP_AJ_T0048347.1 MGP_AJ_G0023920.1 mouse_genomes_project 17 57444385 57460404 + Vav1 protein_coding processed_transcript MGP_AJ_T0013291.1 MGP_AJ_G0011386.1 mouse_genomes_project 17 79020022 79024450 - processed_pseudogene processed_pseudogene MGP_AJ_T0047108.1 MGP_AJ_G0023538.1 mouse_genomes_project 17 33462044 33486280 + MGP_AJ_P0047108 Notch4 protein_coding protein_coding MGP_AJ_T0047109.1 MGP_AJ_G0023538.1 mouse_genomes_project 17 33462074 33463393 + Notch4 protein_coding processed_transcript MGP_AJ_T0047110.1 MGP_AJ_G0023538.1 mouse_genomes_project 17 33462113 33486008 + MGP_AJ_P0047110 Notch4 protein_coding nonsense_mediated_decay MGP_AJ_T0047111.1 MGP_AJ_G0023538.1 mouse_genomes_project 17 33462912 33463354 + Notch4 protein_coding retained_intron MGP_AJ_T0047112.1 MGP_AJ_G0023538.1 mouse_genomes_project 17 33475858 33480244 + Notch4 protein_coding processed_transcript MGP_AJ_T0047113.1 MGP_AJ_G0023538.1 mouse_genomes_project 17 33481647 33484399 + MGP_AJ_P0047113 Notch4 protein_coding nonsense_mediated_decay MGP_AJ_T0047114.1 MGP_AJ_G0023538.1 mouse_genomes_project 17 33481647 33484451 + MGP_AJ_P0047114 Notch4 protein_coding nonsense_mediated_decay MGP_AJ_T0047115.1 MGP_AJ_G0023538.1 mouse_genomes_project 17 33482338 33483429 + Notch4 protein_coding retained_intron MGP_AJ_T0047116.1 MGP_AJ_G0023538.1 mouse_genomes_project 17 33483441 33484400 + Notch4 protein_coding retained_intron MGP_AJ_T0047117.1 MGP_AJ_G0023538.1 mouse_genomes_project 17 33484051 33485250 + Notch4 protein_coding retained_intron MGP_AJ_T0047118.1 MGP_AJ_G0023538.1 mouse_genomes_project 17 33484721 33485278 + Notch4 protein_coding processed_transcript MGP_AJ_T0047119.1 MGP_AJ_G0023538.1 mouse_genomes_project 17 33484817 33485595 + Notch4 protein_coding processed_transcript MGP_AJ_T0102384.1 MGP_AJ_G0040126.1 mouse_genomes_project 17 18318421 18319273 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0047477.1 MGP_AJ_G0023611.1 mouse_genomes_project 17 34940926 34945042 + MGP_AJ_P0047477 Nrm protein_coding protein_coding MGP_AJ_T0047478.1 MGP_AJ_G0023611.1 mouse_genomes_project 17 34940946 34944303 + MGP_AJ_P0047478 Nrm protein_coding protein_coding MGP_AJ_T0047479.1 MGP_AJ_G0023611.1 mouse_genomes_project 17 34941094 34944243 + MGP_AJ_P0047479 Nrm protein_coding protein_coding MGP_AJ_T0045856.1 MGP_AJ_G0023246.1 mouse_genomes_project 17 22390947 22398606 + MGP_AJ_P0045856 Prss27 protein_coding protein_coding MGP_AJ_T0006930.1 MGP_AJ_G0005702.1 mouse_genomes_project 17 27571326 27595113 - Trp53cor1 lincRNA lincRNA MGP_AJ_T0047675.1 MGP_AJ_G0023673.1 mouse_genomes_project 17 36734799 36744079 + MGP_AJ_P0047675 Olfr110 protein_coding protein_coding MGP_AJ_T0048502.1 MGP_AJ_G0023965.1 mouse_genomes_project 17 71552376 71564421 - Smchd1 protein_coding processed_transcript MGP_AJ_T0048503.1 MGP_AJ_G0023965.1 mouse_genomes_project 17 71552376 71689701 - MGP_AJ_P0048503 Smchd1 protein_coding protein_coding MGP_AJ_T0048504.1 MGP_AJ_G0023965.1 mouse_genomes_project 17 71554397 71556892 - Smchd1 protein_coding retained_intron MGP_AJ_T0048505.1 MGP_AJ_G0023965.1 mouse_genomes_project 17 71556805 71569851 - Smchd1 protein_coding retained_intron MGP_AJ_T0048506.1 MGP_AJ_G0023965.1 mouse_genomes_project 17 71558789 71561292 - Smchd1 protein_coding retained_intron MGP_AJ_T0048507.1 MGP_AJ_G0023965.1 mouse_genomes_project 17 71565004 71569149 - Smchd1 protein_coding retained_intron MGP_AJ_T0048508.1 MGP_AJ_G0023965.1 mouse_genomes_project 17 71604863 71606110 - Smchd1 protein_coding retained_intron MGP_AJ_T0048509.1 MGP_AJ_G0023965.1 mouse_genomes_project 17 71608221 71609036 - Smchd1 protein_coding retained_intron MGP_AJ_T0048513.1 MGP_AJ_G0023965.1 mouse_genomes_project 17 71686886 71689686 - Smchd1 protein_coding retained_intron MGP_AJ_T0048510.1 MGP_AJ_G0023966.1 mouse_genomes_project 17 71672763 71674355 - Gm4707 protein_coding translated_processed_pseudogene MGP_AJ_T0048511.1 MGP_AJ_G0023966.1 mouse_genomes_project 17 71673461 71673737 - MGP_AJ_P0048511 Gm4707 protein_coding protein_coding MGP_AJ_T0048512.1 MGP_AJ_G0023966.1 mouse_genomes_project 17 71674266 71674832 - MGP_AJ_P0048512 Gm4707 protein_coding protein_coding MGP_AJ_T0048609.1 MGP_AJ_G0024003.1 mouse_genomes_project 17 79255737 79276271 - MGP_AJ_P0048609 Cebpz protein_coding protein_coding MGP_AJ_T0102426.1 MGP_AJ_G0040168.1 mouse_genomes_project 17 35893108 35894232 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0045610.1 MGP_AJ_G0023136.1 mouse_genomes_project 17 12611540 12629407 - MGP_AJ_P0045610 protein_coding protein_coding MGP_AJ_T0045611.1 MGP_AJ_G0023136.1 mouse_genomes_project 17 12611540 12629407 - MGP_AJ_P0045611 protein_coding protein_coding MGP_AJ_T0003760.1 MGP_AJ_G0003380.1 mouse_genomes_project 17 35088808 35166991 + antisense antisense MGP_AJ_T0047704.1 MGP_AJ_G0023698.1 mouse_genomes_project 17 37509756 37510695 + MGP_AJ_P0047704 Olfr136 protein_coding protein_coding MGP_AJ_T0045518.1 MGP_AJ_G0023111.1 mouse_genomes_project 17 9618135 9704818 + MGP_AJ_P0045518 Agpat4 protein_coding protein_coding MGP_AJ_T0045519.1 MGP_AJ_G0023111.1 mouse_genomes_project 17 9618725 9713554 + MGP_AJ_P0045519 Agpat4 protein_coding protein_coding MGP_AJ_T0045520.1 MGP_AJ_G0023111.1 mouse_genomes_project 17 9618770 9638075 + Agpat4 protein_coding processed_transcript MGP_AJ_T0045521.1 MGP_AJ_G0023111.1 mouse_genomes_project 17 9650085 9704469 + MGP_AJ_P0045521 Agpat4 protein_coding protein_coding MGP_AJ_T0045522.1 MGP_AJ_G0023111.1 mouse_genomes_project 17 9650165 9713002 + MGP_AJ_P0045522 Agpat4 protein_coding nonsense_mediated_decay MGP_AJ_T0045523.1 MGP_AJ_G0023111.1 mouse_genomes_project 17 9709227 9713176 + Agpat4 protein_coding retained_intron MGP_AJ_T0046787.1 MGP_AJ_G0023461.1 mouse_genomes_project 17 31158313 31171380 - MGP_AJ_P0046787 Rasal3 protein_coding protein_coding MGP_AJ_T0046788.1 MGP_AJ_G0023461.1 mouse_genomes_project 17 31158315 31171356 - MGP_AJ_P0046788 Rasal3 protein_coding nonsense_mediated_decay MGP_AJ_T0046789.1 MGP_AJ_G0023461.1 mouse_genomes_project 17 31158324 31171365 - Rasal3 protein_coding retained_intron MGP_AJ_T0046790.1 MGP_AJ_G0023461.1 mouse_genomes_project 17 31158571 31159163 - Rasal3 protein_coding retained_intron MGP_AJ_T0046791.1 MGP_AJ_G0023461.1 mouse_genomes_project 17 31158578 31171378 - MGP_AJ_P0046791 Rasal3 protein_coding protein_coding MGP_AJ_T0046792.1 MGP_AJ_G0023461.1 mouse_genomes_project 17 31158627 31171334 - MGP_AJ_P0046792 Rasal3 protein_coding protein_coding MGP_AJ_T0046793.1 MGP_AJ_G0023461.1 mouse_genomes_project 17 31160293 31161381 - Rasal3 protein_coding retained_intron MGP_AJ_T0046794.1 MGP_AJ_G0023461.1 mouse_genomes_project 17 31161577 31163026 - Rasal3 protein_coding retained_intron MGP_AJ_T0046795.1 MGP_AJ_G0023461.1 mouse_genomes_project 17 31163221 31164438 - Rasal3 protein_coding retained_intron MGP_AJ_T0046796.1 MGP_AJ_G0023461.1 mouse_genomes_project 17 31166532 31171378 - Rasal3 protein_coding retained_intron MGP_AJ_T0045596.1 MGP_AJ_G0023130.1 mouse_genomes_project 17 11922465 12048015 + MGP_AJ_P0045596 Smoc2 protein_coding protein_coding MGP_AJ_T0010225.1 MGP_AJ_G0008347.1 mouse_genomes_project 17 90773223 90773329 + Gm24510 miRNA miRNA MGP_AJ_T0047670.1 MGP_AJ_G0023669.1 mouse_genomes_project 17 36650021 36651054 + MGP_AJ_P0047670 Olfr107 protein_coding protein_coding MGP_AJ_T0102439.1 MGP_AJ_G0040181.1 mouse_genomes_project 17 36637655 36638582 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0046309.1 MGP_AJ_G0023353.1 mouse_genomes_project 17 24587437 24592355 - MGP_AJ_P0046309 Arhgdig protein_coding nonsense_mediated_decay MGP_AJ_T0046311.1 MGP_AJ_G0023353.1 mouse_genomes_project 17 24590394 24592562 - MGP_AJ_P0046311 Arhgdig protein_coding protein_coding MGP_AJ_T0046312.1 MGP_AJ_G0023353.1 mouse_genomes_project 17 24590608 24592581 - MGP_AJ_P0046312 Arhgdig protein_coding protein_coding MGP_AJ_T0046313.1 MGP_AJ_G0023353.1 mouse_genomes_project 17 24590647 24598996 - Arhgdig protein_coding processed_transcript MGP_AJ_T0046314.1 MGP_AJ_G0023353.1 mouse_genomes_project 17 24590702 24592356 - Arhgdig protein_coding retained_intron MGP_AJ_T0045400.1 MGP_AJ_G0023077.1 mouse_genomes_project 17 2926751 3015485 + MGP_AJ_P0045400 Snx9 protein_coding protein_coding MGP_AJ_T0047835.1 MGP_AJ_G0023753.1 mouse_genomes_project 17 45507844 45508980 - MGP_AJ_P0047835 Gm7325 protein_coding protein_coding MGP_AJ_T0047836.1 MGP_AJ_G0023753.1 mouse_genomes_project 17 45507844 45508945 - MGP_AJ_P0047836 Gm7325 protein_coding protein_coding MGP_AJ_T0047837.1 MGP_AJ_G0023753.1 mouse_genomes_project 17 45507844 45508793 - MGP_AJ_P0047837 Gm7325 protein_coding protein_coding MGP_AJ_T0099646.1 MGP_AJ_G0037612.1 mouse_genomes_project 17 27498658 27498830 - Gm23887 snRNA snRNA MGP_AJ_T0102401.1 MGP_AJ_G0040143.1 mouse_genomes_project 17 32876651 32877803 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0006977.1 MGP_AJ_G0005735.1 mouse_genomes_project 17 69583059 69605379 - A930029G22Rik lincRNA lincRNA MGP_AJ_T0048194.1 MGP_AJ_G0023854.1 mouse_genomes_project 17 54431195 54432784 - MGP_AJ_P0048194 Armcx3 protein_coding protein_coding MGP_AJ_T0003721.1 MGP_AJ_G0003350.1 mouse_genomes_project 17 22034122 22040292 + Gm16275 antisense antisense MGP_AJ_T0048658.1 MGP_AJ_G0024029.1 mouse_genomes_project 17 82880806 82881956 + MGP_AJ_P0048658 protein_coding protein_coding MGP_AJ_T0048748.1 MGP_AJ_G0024062.1 mouse_genomes_project 17 87900143 87921568 - MGP_AJ_P0048748 Calm2 protein_coding protein_coding MGP_AJ_T0048749.1 MGP_AJ_G0024062.1 mouse_genomes_project 17 87909689 87921622 - Calm2 protein_coding retained_intron MGP_AJ_T0048750.1 MGP_AJ_G0024063.1 mouse_genomes_project 17 88120102 88135750 + MGP_AJ_P0048750 Epcam protein_coding protein_coding MGP_AJ_T0048255.1 MGP_AJ_G0023884.1 mouse_genomes_project 17 56514122 56563816 - MGP_AJ_P0048255 Ptprs protein_coding protein_coding MGP_AJ_T0048256.1 MGP_AJ_G0023884.1 mouse_genomes_project 17 56514124 56577963 - MGP_AJ_P0048256 Ptprs protein_coding protein_coding MGP_AJ_T0048257.1 MGP_AJ_G0023884.1 mouse_genomes_project 17 56523928 56577849 - Ptprs protein_coding processed_transcript MGP_AJ_T0048258.1 MGP_AJ_G0023884.1 mouse_genomes_project 17 56526668 56530891 - MGP_AJ_P0048258 Ptprs protein_coding unknown_likely_coding MGP_AJ_T0048259.1 MGP_AJ_G0023884.1 mouse_genomes_project 17 56526668 56532122 - MGP_AJ_P0048259 Ptprs protein_coding unknown_likely_coding MGP_AJ_T0046686.1 MGP_AJ_G0023438.1 mouse_genomes_project 17 29786271 29844876 + MGP_AJ_P0046686 Abcg1 protein_coding protein_coding MGP_AJ_T0046687.1 MGP_AJ_G0023438.1 mouse_genomes_project 17 29786347 29827705 + Abcg1 protein_coding retained_intron MGP_AJ_T0047661.1 MGP_AJ_G0023661.1 mouse_genomes_project 17 36456858 36457909 + MGP_AJ_P0047661 Olfr96 protein_coding protein_coding MGP_AJ_T0048814.1 MGP_AJ_G0024079.1 mouse_genomes_project 17 95351531 95366254 - MGP_AJ_P0048814 2610044O15Rik8 protein_coding protein_coding MGP_AJ_T0013264.1 MGP_AJ_G0011359.1 mouse_genomes_project 17 46986277 46986709 - processed_pseudogene processed_pseudogene MGP_AJ_T0047127.1 MGP_AJ_G0023541.1 mouse_genomes_project 17 33496201 33499272 + MGP_AJ_P0047127 Ager protein_coding protein_coding MGP_AJ_T0047128.1 MGP_AJ_G0023541.1 mouse_genomes_project 17 33496201 33499276 + MGP_AJ_P0047128 Ager protein_coding protein_coding MGP_AJ_T0047129.1 MGP_AJ_G0023541.1 mouse_genomes_project 17 33496214 33499247 + Ager protein_coding processed_transcript MGP_AJ_T0047130.1 MGP_AJ_G0023541.1 mouse_genomes_project 17 33496214 33499247 + Ager protein_coding retained_intron MGP_AJ_T0047131.1 MGP_AJ_G0023541.1 mouse_genomes_project 17 33496233 33499200 + Ager protein_coding retained_intron MGP_AJ_T0047132.1 MGP_AJ_G0023541.1 mouse_genomes_project 17 33496233 33499200 + Ager protein_coding retained_intron MGP_AJ_T0047133.1 MGP_AJ_G0023541.1 mouse_genomes_project 17 33496233 33499200 + Ager protein_coding retained_intron MGP_AJ_T0047134.1 MGP_AJ_G0023541.1 mouse_genomes_project 17 33496233 33499236 + Ager protein_coding retained_intron MGP_AJ_T0047135.1 MGP_AJ_G0023541.1 mouse_genomes_project 17 33496233 33499200 + Ager protein_coding retained_intron MGP_AJ_T0047136.1 MGP_AJ_G0023541.1 mouse_genomes_project 17 33496233 33499200 + Ager protein_coding retained_intron MGP_AJ_T0047137.1 MGP_AJ_G0023541.1 mouse_genomes_project 17 33496233 33499200 + Ager protein_coding retained_intron MGP_AJ_T0047138.1 MGP_AJ_G0023541.1 mouse_genomes_project 17 33496233 33499236 + MGP_AJ_P0047138 Ager protein_coding protein_coding MGP_AJ_T0047139.1 MGP_AJ_G0023541.1 mouse_genomes_project 17 33496233 33499236 + MGP_AJ_P0047139 Ager protein_coding nonsense_mediated_decay MGP_AJ_T0046297.1 MGP_AJ_G0023349.1 mouse_genomes_project 17 24503318 24513255 + MGP_AJ_P0046297 Tmem8 protein_coding protein_coding MGP_AJ_T0046298.1 MGP_AJ_G0023349.1 mouse_genomes_project 17 24509442 24513255 + MGP_AJ_P0046298 Tmem8 protein_coding protein_coding MGP_AJ_T0010200.1 MGP_AJ_G0008322.1 mouse_genomes_project 17 33812068 33812131 - Mir6971 miRNA miRNA MGP_AJ_T0011436.1 MGP_AJ_G0009558.1 mouse_genomes_project 17 86019906 86019994 + Gm27435 misc_RNA misc_RNA MGP_AJ_T0045928.1 MGP_AJ_G0023263.1 mouse_genomes_project 17 22829613 22831199 + MGP_AJ_P0045928 Bricd5 protein_coding protein_coding MGP_AJ_T0045929.1 MGP_AJ_G0023263.1 mouse_genomes_project 17 22829696 22831117 + MGP_AJ_P0045929 Bricd5 protein_coding protein_coding MGP_AJ_T0045855.1 MGP_AJ_G0023245.1 mouse_genomes_project 17 22362653 22370536 + MGP_AJ_P0045855 Gm5225 protein_coding protein_coding MGP_AJ_T0048652.1 MGP_AJ_G0024025.1 mouse_genomes_project 17 81326451 81386266 + MGP_AJ_P0048652 Tmem178 protein_coding protein_coding MGP_AJ_T0048348.1 MGP_AJ_G0023921.1 mouse_genomes_project 17 57494075 57611781 + MGP_AJ_P0048348 Adgre1 protein_coding protein_coding MGP_AJ_T0048349.1 MGP_AJ_G0023921.1 mouse_genomes_project 17 57494103 57611775 + MGP_AJ_P0048349 Adgre1 protein_coding protein_coding MGP_AJ_T0047937.1 MGP_AJ_G0023775.1 mouse_genomes_project 17 46362684 46408590 - MGP_AJ_P0047937 Ttbk1 protein_coding protein_coding MGP_AJ_T0047938.1 MGP_AJ_G0023775.1 mouse_genomes_project 17 46381181 46405167 - MGP_AJ_P0047938 Ttbk1 protein_coding unknown_likely_coding MGP_AJ_T0048302.1 MGP_AJ_G0023898.1 mouse_genomes_project 17 56892814 56948248 - MGP_AJ_P0048302 Rfx2 protein_coding protein_coding MGP_AJ_T0048303.1 MGP_AJ_G0023898.1 mouse_genomes_project 17 56892814 56948248 - MGP_AJ_P0048303 Rfx2 protein_coding protein_coding MGP_AJ_T0045677.1 MGP_AJ_G0023154.1 mouse_genomes_project 17 15568414 15569323 - MGP_AJ_P0045677 Gm7535 protein_coding protein_coding MGP_AJ_T0013234.1 MGP_AJ_G0011329.1 mouse_genomes_project 17 33234971 33235259 + processed_pseudogene processed_pseudogene MGP_AJ_T0048726.1 MGP_AJ_G0024058.1 mouse_genomes_project 17 87562217 87592094 + MGP_AJ_P0048726 Socs5 protein_coding protein_coding MGP_AJ_T0045849.1 MGP_AJ_G0023243.1 mouse_genomes_project 17 22320071 22323174 - MGP_AJ_P0045849 Prss30 protein_coding protein_coding MGP_AJ_T0045850.1 MGP_AJ_G0023243.1 mouse_genomes_project 17 22320784 22322745 - MGP_AJ_P0045850 Prss30 protein_coding protein_coding MGP_AJ_T0045851.1 MGP_AJ_G0023243.1 mouse_genomes_project 17 22321011 22323118 - Prss30 protein_coding retained_intron MGP_AJ_T0045852.1 MGP_AJ_G0023243.1 mouse_genomes_project 17 22321035 22322624 - MGP_AJ_P0045852 Prss30 protein_coding nonsense_mediated_decay MGP_AJ_T0045853.1 MGP_AJ_G0023243.1 mouse_genomes_project 17 22321611 22323142 - MGP_AJ_P0045853 Prss30 protein_coding protein_coding MGP_AJ_T0047777.1 MGP_AJ_G0023742.1 mouse_genomes_project 17 44404147 44644761 - MGP_AJ_P0047777 Runx2 protein_coding nonsense_mediated_decay MGP_AJ_T0047778.1 MGP_AJ_G0023742.1 mouse_genomes_project 17 44512962 44645233 - MGP_AJ_P0047778 Runx2 protein_coding protein_coding MGP_AJ_T0047779.1 MGP_AJ_G0023742.1 mouse_genomes_project 17 44512962 44723801 - MGP_AJ_P0047779 Runx2 protein_coding protein_coding MGP_AJ_T0047780.1 MGP_AJ_G0023742.1 mouse_genomes_project 17 44515209 44644295 - MGP_AJ_P0047780 Runx2 protein_coding protein_coding MGP_AJ_T0047781.1 MGP_AJ_G0023742.1 mouse_genomes_project 17 44516479 44723585 - MGP_AJ_P0047781 Runx2 protein_coding protein_coding MGP_AJ_T0047782.1 MGP_AJ_G0023742.1 mouse_genomes_project 17 44516767 44723230 - MGP_AJ_P0047782 Runx2 protein_coding protein_coding MGP_AJ_T0047783.1 MGP_AJ_G0023742.1 mouse_genomes_project 17 44516767 44644219 - MGP_AJ_P0047783 Runx2 protein_coding protein_coding MGP_AJ_T0047784.1 MGP_AJ_G0023742.1 mouse_genomes_project 17 44516853 44723631 - MGP_AJ_P0047784 Runx2 protein_coding protein_coding MGP_AJ_T0047785.1 MGP_AJ_G0023742.1 mouse_genomes_project 17 44516949 44723801 - MGP_AJ_P0047785 Runx2 protein_coding nonsense_mediated_decay MGP_AJ_T0047786.1 MGP_AJ_G0023742.1 mouse_genomes_project 17 44517263 44643954 - MGP_AJ_P0047786 Runx2 protein_coding protein_coding MGP_AJ_T0047787.1 MGP_AJ_G0023742.1 mouse_genomes_project 17 44548025 44644219 - MGP_AJ_P0047787 Runx2 protein_coding unknown_likely_coding MGP_AJ_T0047788.1 MGP_AJ_G0023742.1 mouse_genomes_project 17 44549055 44643281 - MGP_AJ_P0047788 Runx2 protein_coding protein_coding MGP_AJ_T0047789.1 MGP_AJ_G0023742.1 mouse_genomes_project 17 44549151 44723268 - MGP_AJ_P0047789 Runx2 protein_coding nonsense_mediated_decay MGP_AJ_T0047794.1 MGP_AJ_G0023742.1 mouse_genomes_project 17 44722909 44723631 - Runx2 protein_coding retained_intron MGP_AJ_T0003773.1 MGP_AJ_G0003390.1 mouse_genomes_project 17 47639621 47643090 + Tomm6os antisense antisense MGP_AJ_T0047032.1 MGP_AJ_G0023519.1 mouse_genomes_project 17 32831726 32859150 + MGP_AJ_P0047032 Col11a2 protein_coding protein_coding MGP_AJ_T0047033.1 MGP_AJ_G0023519.1 mouse_genomes_project 17 32831726 32858707 + MGP_AJ_P0047033 Col11a2 protein_coding protein_coding MGP_AJ_T0047034.1 MGP_AJ_G0023519.1 mouse_genomes_project 17 32831726 32858707 + MGP_AJ_P0047034 Col11a2 protein_coding protein_coding MGP_AJ_T0047035.1 MGP_AJ_G0023519.1 mouse_genomes_project 17 32831726 32844915 + MGP_AJ_P0047035 Col11a2 protein_coding protein_coding MGP_AJ_T0047036.1 MGP_AJ_G0023519.1 mouse_genomes_project 17 32840585 32852416 + MGP_AJ_P0047036 Col11a2 protein_coding protein_coding MGP_AJ_T0047037.1 MGP_AJ_G0023519.1 mouse_genomes_project 17 32844704 32846731 + Col11a2 protein_coding processed_transcript MGP_AJ_T0047038.1 MGP_AJ_G0023519.1 mouse_genomes_project 17 32847482 32848847 + Col11a2 protein_coding retained_intron MGP_AJ_T0047039.1 MGP_AJ_G0023519.1 mouse_genomes_project 17 32854882 32857257 + Col11a2 protein_coding retained_intron MGP_AJ_T0047377.1 MGP_AJ_G0023588.1 mouse_genomes_project 17 34173494 34175625 - MGP_AJ_P0047377 Lta protein_coding protein_coding MGP_AJ_T0045675.1 MGP_AJ_G0023152.1 mouse_genomes_project 17 15539461 15625481 + MGP_AJ_P0045675 Fpr3 protein_coding protein_coding MGP_AJ_T0045678.1 MGP_AJ_G0023152.1 mouse_genomes_project 17 15624274 15625481 + MGP_AJ_P0045678 Fpr3 protein_coding protein_coding MGP_AJ_T0047563.1 MGP_AJ_G0023629.1 mouse_genomes_project 17 35403826 35406039 - MGP_AJ_P0047563 Rpp21 protein_coding nonsense_mediated_decay MGP_AJ_T0047564.1 MGP_AJ_G0023629.1 mouse_genomes_project 17 35403848 35406026 - Rpp21 protein_coding retained_intron MGP_AJ_T0047565.1 MGP_AJ_G0023629.1 mouse_genomes_project 17 35403848 35406259 - MGP_AJ_P0047565 Rpp21 protein_coding protein_coding MGP_AJ_T0047566.1 MGP_AJ_G0023629.1 mouse_genomes_project 17 35403854 35404533 - Rpp21 protein_coding retained_intron MGP_AJ_T0047567.1 MGP_AJ_G0023629.1 mouse_genomes_project 17 35403893 35405793 - MGP_AJ_P0047567 Rpp21 protein_coding nonsense_mediated_decay MGP_AJ_T0047568.1 MGP_AJ_G0023629.1 mouse_genomes_project 17 35404125 35406038 - Rpp21 protein_coding retained_intron MGP_AJ_T0006898.1 MGP_AJ_G0005675.1 mouse_genomes_project 17 5875896 5886395 - Gm16702 lincRNA lincRNA MGP_AJ_T0045743.1 MGP_AJ_G0023204.1 mouse_genomes_project 17 19861750 20266601 - Zfp995 protein_coding retained_intron MGP_AJ_T0045744.1 MGP_AJ_G0023204.1 mouse_genomes_project 17 19897950 20350200 - MGP_AJ_P0045744 Zfp995 protein_coding protein_coding MGP_AJ_T0045745.1 MGP_AJ_G0023204.1 mouse_genomes_project 17 19913083 20349917 - Zfp995 protein_coding processed_transcript MGP_AJ_T0010215.1 MGP_AJ_G0008337.1 mouse_genomes_project 17 56337116 56337227 + Mir7b miRNA miRNA MGP_AJ_T0047684.1 MGP_AJ_G0023680.1 mouse_genomes_project 17 36916762 36951665 + MGP_AJ_P0047684 protein_coding protein_coding MGP_AJ_T0047668.1 MGP_AJ_G0023668.1 mouse_genomes_project 17 36578096 36579038 - MGP_AJ_P0047668 Olfr103 protein_coding protein_coding MGP_AJ_T0047669.1 MGP_AJ_G0023668.1 mouse_genomes_project 17 36578096 36581450 - MGP_AJ_P0047669 Olfr103 protein_coding protein_coding MGP_AJ_T0102392.1 MGP_AJ_G0040134.1 mouse_genomes_project 17 19325209 19325945 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0048647.1 MGP_AJ_G0024021.1 mouse_genomes_project 17 80767902 80857247 - MGP_AJ_P0048647 Sos1 protein_coding protein_coding MGP_AJ_T0047123.1 MGP_AJ_G0023540.1 mouse_genomes_project 17 33490331 33494342 + MGP_AJ_P0047123 Pbx2 protein_coding protein_coding MGP_AJ_T0047124.1 MGP_AJ_G0023540.1 mouse_genomes_project 17 33490511 33494842 + MGP_AJ_P0047124 Pbx2 protein_coding protein_coding MGP_AJ_T0047125.1 MGP_AJ_G0023540.1 mouse_genomes_project 17 33491171 33492157 + MGP_AJ_P0047125 Pbx2 protein_coding protein_coding MGP_AJ_T0047126.1 MGP_AJ_G0023540.1 mouse_genomes_project 17 33493885 33494653 + Pbx2 protein_coding retained_intron MGP_AJ_T0102427.1 MGP_AJ_G0040169.1 mouse_genomes_project 17 35901648 35901696 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0098621.1 MGP_AJ_G0036605.1 mouse_genomes_project 17 63218664 63218775 - Gm25348 rRNA rRNA MGP_AJ_T0047992.1 MGP_AJ_G0023799.1 mouse_genomes_project 17 47308309 47318102 + MGP_AJ_P0047992 Mrps10 protein_coding protein_coding MGP_AJ_T0047993.1 MGP_AJ_G0023799.1 mouse_genomes_project 17 47308314 47315368 + Mrps10 protein_coding retained_intron MGP_AJ_T0047994.1 MGP_AJ_G0023799.1 mouse_genomes_project 17 47308315 47314489 + MGP_AJ_P0047994 Mrps10 protein_coding protein_coding MGP_AJ_T0047995.1 MGP_AJ_G0023799.1 mouse_genomes_project 17 47308320 47315412 + Mrps10 protein_coding retained_intron MGP_AJ_T0047996.1 MGP_AJ_G0023799.1 mouse_genomes_project 17 47308329 47317708 + MGP_AJ_P0047996 Mrps10 protein_coding protein_coding MGP_AJ_T0047997.1 MGP_AJ_G0023799.1 mouse_genomes_project 17 47309530 47317222 + Mrps10 protein_coding retained_intron MGP_AJ_T0047998.1 MGP_AJ_G0023799.1 mouse_genomes_project 17 47311134 47317242 + Mrps10 protein_coding processed_transcript MGP_AJ_T0047999.1 MGP_AJ_G0023799.1 mouse_genomes_project 17 47311893 47312756 + Mrps10 protein_coding retained_intron MGP_AJ_T0048000.1 MGP_AJ_G0023799.1 mouse_genomes_project 17 47314893 47321920 + Mrps10 protein_coding retained_intron MGP_AJ_T0045989.1 MGP_AJ_G0023278.1 mouse_genomes_project 17 23083115 23086847 + MGP_AJ_P0045989 Rps2 protein_coding protein_coding MGP_AJ_T0045990.1 MGP_AJ_G0023278.1 mouse_genomes_project 17 23085065 23086844 + MGP_AJ_P0045990 Rps2 protein_coding protein_coding MGP_AJ_T0045991.1 MGP_AJ_G0023278.1 mouse_genomes_project 17 23085112 23086847 + MGP_AJ_P0045991 Rps2 protein_coding protein_coding MGP_AJ_T0045992.1 MGP_AJ_G0023278.1 mouse_genomes_project 17 23085253 23086843 + MGP_AJ_P0045992 Rps2 protein_coding protein_coding MGP_AJ_T0045993.1 MGP_AJ_G0023278.1 mouse_genomes_project 17 23085264 23086313 + Rps2 protein_coding retained_intron MGP_AJ_T0045994.1 MGP_AJ_G0023278.1 mouse_genomes_project 17 23085275 23086338 + Rps2 protein_coding retained_intron MGP_AJ_T0045995.1 MGP_AJ_G0023278.1 mouse_genomes_project 17 23086454 23086843 + Rps2 protein_coding retained_intron MGP_AJ_T0102422.1 MGP_AJ_G0040164.1 mouse_genomes_project 17 35748966 35763672 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0003758.1 MGP_AJ_G0003378.1 mouse_genomes_project 17 34940526 34946526 - Ppp1r18os antisense antisense MGP_AJ_T0048702.1 MGP_AJ_G0024045.1 mouse_genomes_project 17 85460219 85486914 - MGP_AJ_P0048702 Prepl protein_coding protein_coding MGP_AJ_T0048703.1 MGP_AJ_G0024045.1 mouse_genomes_project 17 85461385 85486928 - MGP_AJ_P0048703 Prepl protein_coding protein_coding MGP_AJ_T0047005.1 MGP_AJ_G0023515.1 mouse_genomes_project 17 32806344 32816815 - MGP_AJ_P0047005 Ring1 protein_coding protein_coding MGP_AJ_T0047006.1 MGP_AJ_G0023515.1 mouse_genomes_project 17 32806652 32816071 - Ring1 protein_coding retained_intron MGP_AJ_T0047007.1 MGP_AJ_G0023515.1 mouse_genomes_project 17 32816325 32816787 - Ring1 protein_coding retained_intron MGP_AJ_T0010228.1 MGP_AJ_G0008350.1 mouse_genomes_project 17 92392707 92392842 + Gm44345 miRNA miRNA MGP_AJ_T0102412.1 MGP_AJ_G0040154.1 mouse_genomes_project 17 35286293 35345499 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0048201.1 MGP_AJ_G0023858.1 mouse_genomes_project 17 55817376 55909242 + MGP_AJ_P0048201 Adgre4 protein_coding protein_coding MGP_AJ_T0047621.1 MGP_AJ_G0023650.1 mouse_genomes_project 17 36165715 36171164 - H2-M5 protein_coding retained_intron MGP_AJ_T0047622.1 MGP_AJ_G0023650.1 mouse_genomes_project 17 36166737 36170597 - MGP_AJ_P0047622 H2-M5 protein_coding unknown_likely_coding MGP_AJ_T0047623.1 MGP_AJ_G0023650.1 mouse_genomes_project 17 36166737 36170807 - MGP_AJ_P0047623 H2-M5 protein_coding unknown_likely_coding MGP_AJ_T0047624.1 MGP_AJ_G0023650.1 mouse_genomes_project 17 36168489 36171131 - MGP_AJ_P0047624 H2-M5 protein_coding protein_coding MGP_AJ_T0047625.1 MGP_AJ_G0023650.1 mouse_genomes_project 17 36168749 36170823 - MGP_AJ_P0047625 H2-M5 protein_coding protein_coding MGP_AJ_T0047626.1 MGP_AJ_G0023650.1 mouse_genomes_project 17 36168749 36170823 - MGP_AJ_P0047626 H2-M5 protein_coding protein_coding MGP_AJ_T0047627.1 MGP_AJ_G0023650.1 mouse_genomes_project 17 36169131 36170680 - MGP_AJ_P0047627 H2-M5 protein_coding protein_coding MGP_AJ_T0046535.1 MGP_AJ_G0023401.1 mouse_genomes_project 17 27033532 27036576 + MGP_AJ_P0046535 Clpsl2 protein_coding protein_coding MGP_AJ_T0013263.1 MGP_AJ_G0011358.1 mouse_genomes_project 17 41221679 41222680 + processed_pseudogene processed_pseudogene MGP_AJ_T0045458.1 MGP_AJ_G0023096.1 mouse_genomes_project 17 5437911 5440721 + MGP_AJ_P0045458 protein_coding protein_coding MGP_AJ_T0098623.1 MGP_AJ_G0036607.1 mouse_genomes_project 17 78866384 78866495 - Gm22562 rRNA rRNA MGP_AJ_T0048646.1 MGP_AJ_G0024020.1 mouse_genomes_project 17 80746138 80746462 - MGP_AJ_P0048646 Gm10190 protein_coding protein_coding MGP_AJ_T0010218.1 MGP_AJ_G0008340.1 mouse_genomes_project 17 63457531 63457615 + Gm24813 miRNA miRNA MGP_AJ_T0047255.1 MGP_AJ_G0023564.1 mouse_genomes_project 17 33956483 33958603 + Lsm2 protein_coding retained_intron MGP_AJ_T0047256.1 MGP_AJ_G0023564.1 mouse_genomes_project 17 33956501 33960513 + MGP_AJ_P0047256 Lsm2 protein_coding protein_coding MGP_AJ_T0047257.1 MGP_AJ_G0023564.1 mouse_genomes_project 17 33956532 33960293 + Lsm2 protein_coding processed_transcript MGP_AJ_T0047258.1 MGP_AJ_G0023564.1 mouse_genomes_project 17 33956742 33960214 + Lsm2 protein_coding processed_transcript MGP_AJ_T0047259.1 MGP_AJ_G0023564.1 mouse_genomes_project 17 33956750 33960513 + MGP_AJ_P0047259 Lsm2 protein_coding protein_coding MGP_AJ_T0047260.1 MGP_AJ_G0023564.1 mouse_genomes_project 17 33956780 33960511 + Lsm2 protein_coding processed_transcript MGP_AJ_T0047261.1 MGP_AJ_G0023564.1 mouse_genomes_project 17 33956780 33960456 + Lsm2 protein_coding processed_transcript MGP_AJ_T0047262.1 MGP_AJ_G0023564.1 mouse_genomes_project 17 33956780 33960511 + MGP_AJ_P0047262 Lsm2 protein_coding protein_coding MGP_AJ_T0047263.1 MGP_AJ_G0023564.1 mouse_genomes_project 17 33956790 33960119 + Lsm2 protein_coding retained_intron MGP_AJ_T0047264.1 MGP_AJ_G0023564.1 mouse_genomes_project 17 33956830 33960119 + Lsm2 protein_coding retained_intron MGP_AJ_T0047265.1 MGP_AJ_G0023564.1 mouse_genomes_project 17 33959229 33960512 + Lsm2 protein_coding retained_intron MGP_AJ_T0046977.1 MGP_AJ_G0023507.1 mouse_genomes_project 17 32723136 32732746 + MGP_AJ_P0046977 Wdr46 protein_coding protein_coding MGP_AJ_T0046978.1 MGP_AJ_G0023507.1 mouse_genomes_project 17 32723193 32723937 + Wdr46 protein_coding retained_intron MGP_AJ_T0046979.1 MGP_AJ_G0023507.1 mouse_genomes_project 17 32723881 32726173 + Wdr46 protein_coding retained_intron MGP_AJ_T0048643.1 MGP_AJ_G0024018.1 mouse_genomes_project 17 80659878 80669123 + MGP_AJ_P0048643 Morn2 protein_coding protein_coding MGP_AJ_T0011433.1 MGP_AJ_G0009555.1 mouse_genomes_project 17 69754053 69754292 - Gm22967 misc_RNA misc_RNA MGP_AJ_T0006856.1 MGP_AJ_G0005649.1 mouse_genomes_project 16 40201520 40211257 - Gm15713 lincRNA lincRNA MGP_AJ_T0043495.1 MGP_AJ_G0022558.1 mouse_genomes_project 16 14336396 14347410 - MGP_AJ_P0043495 Dgcr14 protein_coding protein_coding MGP_AJ_T0042911.1 MGP_AJ_G0022423.1 mouse_genomes_project 16 411368 545548 - MGP_AJ_P0042911 Crebbp protein_coding protein_coding MGP_AJ_T0042912.1 MGP_AJ_G0022423.1 mouse_genomes_project 16 413740 544843 - MGP_AJ_P0042912 Crebbp protein_coding protein_coding MGP_AJ_T0042913.1 MGP_AJ_G0022423.1 mouse_genomes_project 16 416649 419783 - Crebbp protein_coding retained_intron MGP_AJ_T0042914.1 MGP_AJ_G0022423.1 mouse_genomes_project 16 417840 418635 - Crebbp protein_coding retained_intron MGP_AJ_T0042915.1 MGP_AJ_G0022423.1 mouse_genomes_project 16 418419 424681 - MGP_AJ_P0042915 Crebbp protein_coding protein_coding MGP_AJ_T0042916.1 MGP_AJ_G0022423.1 mouse_genomes_project 16 421878 458600 - MGP_AJ_P0042916 Crebbp protein_coding protein_coding MGP_AJ_T0042917.1 MGP_AJ_G0022423.1 mouse_genomes_project 16 422229 426163 - MGP_AJ_P0042917 Crebbp protein_coding protein_coding MGP_AJ_T0042918.1 MGP_AJ_G0022423.1 mouse_genomes_project 16 449000 456576 - MGP_AJ_P0042918 Crebbp protein_coding protein_coding MGP_AJ_T0100907.1 MGP_AJ_G0038873.1 mouse_genomes_project 16 84178670 84178806 - Gm24891 snoRNA snoRNA MGP_AJ_T0044718.1 MGP_AJ_G0022867.1 mouse_genomes_project 16 54355644 54489739 - MGP_AJ_P0044718 Col8a1 protein_coding protein_coding MGP_AJ_T0043015.1 MGP_AJ_G0022450.1 mouse_genomes_project 16 1573540 1584820 + MGP_AJ_P0043015 Alg1 protein_coding protein_coding MGP_AJ_T0043016.1 MGP_AJ_G0022450.1 mouse_genomes_project 16 1573557 1579655 + Alg1 protein_coding retained_intron MGP_AJ_T0043017.1 MGP_AJ_G0022450.1 mouse_genomes_project 16 1573557 1584829 + MGP_AJ_P0043017 Alg1 protein_coding protein_coding MGP_AJ_T0043018.1 MGP_AJ_G0022450.1 mouse_genomes_project 16 1575089 1580435 + Alg1 protein_coding processed_transcript MGP_AJ_T0043019.1 MGP_AJ_G0022450.1 mouse_genomes_project 16 1579990 1583641 + Alg1 protein_coding retained_intron MGP_AJ_T0043072.1 MGP_AJ_G0022464.1 mouse_genomes_project 16 6565665 6570065 + MGP_AJ_P0043072 Rpl39l protein_coding protein_coding MGP_AJ_T0043073.1 MGP_AJ_G0022464.1 mouse_genomes_project 16 6565667 6570346 + MGP_AJ_P0043073 Rpl39l protein_coding protein_coding MGP_AJ_T0013183.1 MGP_AJ_G0011278.1 mouse_genomes_project 16 47419779 47421118 - processed_pseudogene processed_pseudogene MGP_AJ_T0043595.1 MGP_AJ_G0022578.1 mouse_genomes_project 16 15232597 15234011 + MGP_AJ_P0043595 Cldn5 protein_coding protein_coding MGP_AJ_T0044362.1 MGP_AJ_G0022776.1 mouse_genomes_project 16 35043702 35049475 + MGP_AJ_P0044362 Gm21987 protein_coding protein_coding MGP_AJ_T0044363.1 MGP_AJ_G0022776.1 mouse_genomes_project 16 35043707 35049453 + Gm21987 protein_coding processed_transcript MGP_AJ_T0044364.1 MGP_AJ_G0022776.1 mouse_genomes_project 16 35043733 35049456 + MGP_AJ_P0044364 Gm21987 protein_coding protein_coding MGP_AJ_T0044365.1 MGP_AJ_G0022776.1 mouse_genomes_project 16 35043751 35049443 + Gm21987 protein_coding retained_intron MGP_AJ_T0044367.1 MGP_AJ_G0022776.1 mouse_genomes_project 16 35045951 35049435 + Gm21987 protein_coding retained_intron MGP_AJ_T0044368.1 MGP_AJ_G0022776.1 mouse_genomes_project 16 35046003 35049457 + Gm21987 protein_coding processed_transcript MGP_AJ_T0044876.1 MGP_AJ_G0022925.1 mouse_genomes_project 16 73719000 73823235 + MGP_AJ_P0044876 Usp25 protein_coding unknown_likely_coding MGP_AJ_T0044877.1 MGP_AJ_G0022925.1 mouse_genomes_project 16 73719008 73824492 + MGP_AJ_P0044877 Usp25 protein_coding protein_coding MGP_AJ_T0045201.1 MGP_AJ_G0023032.1 mouse_genomes_project 16 90578965 90622989 + MGP_AJ_P0045201 Morc3 protein_coding protein_coding MGP_AJ_T0045202.1 MGP_AJ_G0023032.1 mouse_genomes_project 16 90578965 90622986 + MGP_AJ_P0045202 Morc3 protein_coding protein_coding MGP_AJ_T0045203.1 MGP_AJ_G0023032.1 mouse_genomes_project 16 90579079 90591705 + Morc3 protein_coding retained_intron MGP_AJ_T0045204.1 MGP_AJ_G0023032.1 mouse_genomes_project 16 90579101 90621944 + MGP_AJ_P0045204 Morc3 protein_coding protein_coding MGP_AJ_T0045205.1 MGP_AJ_G0023032.1 mouse_genomes_project 16 90579107 90607458 + MGP_AJ_P0045205 Morc3 protein_coding nonsense_mediated_decay MGP_AJ_T0045206.1 MGP_AJ_G0023032.1 mouse_genomes_project 16 90591587 90596188 + Morc3 protein_coding processed_transcript MGP_AJ_T0045207.1 MGP_AJ_G0023032.1 mouse_genomes_project 16 90600750 90602900 + Morc3 protein_coding retained_intron MGP_AJ_T0045382.1 MGP_AJ_G0023067.1 mouse_genomes_project 16 94828132 94828195 - MGP_AJ_P0045382 Gm21836 protein_coding protein_coding MGP_AJ_T0099619.1 MGP_AJ_G0037585.1 mouse_genomes_project 16 39911733 39911840 + Gm25873 snRNA snRNA MGP_AJ_T0043187.1 MGP_AJ_G0022494.1 mouse_genomes_project 16 10070242 10102011 + MGP_AJ_P0043187 Bfar protein_coding protein_coding MGP_AJ_T0043188.1 MGP_AJ_G0022494.1 mouse_genomes_project 16 10070259 10102001 + MGP_AJ_P0043188 Bfar protein_coding protein_coding MGP_AJ_T0043190.1 MGP_AJ_G0022494.1 mouse_genomes_project 16 10070334 10097689 + MGP_AJ_P0043190 Bfar protein_coding nonsense_mediated_decay MGP_AJ_T0043191.1 MGP_AJ_G0022494.1 mouse_genomes_project 16 10070446 10084007 + Bfar protein_coding retained_intron MGP_AJ_T0043192.1 MGP_AJ_G0022494.1 mouse_genomes_project 16 10083275 10085934 + Bfar protein_coding retained_intron MGP_AJ_T0043193.1 MGP_AJ_G0022494.1 mouse_genomes_project 16 10083621 10086365 + Bfar protein_coding retained_intron MGP_AJ_T0043194.1 MGP_AJ_G0022494.1 mouse_genomes_project 16 10090361 10095906 + Bfar protein_coding retained_intron MGP_AJ_T0044986.1 MGP_AJ_G0022975.1 mouse_genomes_project 16 85690195 85690789 + MGP_AJ_P0044986 Krtap6-1 protein_coding protein_coding MGP_AJ_T0043990.1 MGP_AJ_G0022682.1 mouse_genomes_project 16 27897757 27916327 - MGP_AJ_P0043990 Apod protein_coding protein_coding MGP_AJ_T0043991.1 MGP_AJ_G0022682.1 mouse_genomes_project 16 27898613 27916323 - MGP_AJ_P0043991 Apod protein_coding protein_coding MGP_AJ_T0043992.1 MGP_AJ_G0022682.1 mouse_genomes_project 16 27898647 27916113 - Apod protein_coding retained_intron MGP_AJ_T0043993.1 MGP_AJ_G0022682.1 mouse_genomes_project 16 27898909 27904948 - Apod protein_coding retained_intron MGP_AJ_T0043994.1 MGP_AJ_G0022682.1 mouse_genomes_project 16 27899002 27905181 - Apod protein_coding retained_intron MGP_AJ_T0043995.1 MGP_AJ_G0022682.1 mouse_genomes_project 16 27905007 27912867 - Apod protein_coding retained_intron MGP_AJ_T0017534.1 MGP_AJ_G0015308.1 mouse_genomes_project 16 92771098 92773752 + Gm15342 processed_transcript processed_transcript MGP_AJ_T0044334.1 MGP_AJ_G0022766.1 mouse_genomes_project 16 34214798 34247845 + MGP_AJ_P0044334 Rabl3 protein_coding protein_coding MGP_AJ_T0044335.1 MGP_AJ_G0022766.1 mouse_genomes_project 16 34214813 34247842 + MGP_AJ_P0044335 Rabl3 protein_coding nonsense_mediated_decay MGP_AJ_T0044336.1 MGP_AJ_G0022766.1 mouse_genomes_project 16 34214818 34239450 + Rabl3 protein_coding retained_intron MGP_AJ_T0044337.1 MGP_AJ_G0022766.1 mouse_genomes_project 16 34239135 34243401 + Rabl3 protein_coding retained_intron MGP_AJ_T0043267.1 MGP_AJ_G0022515.1 mouse_genomes_project 16 12290492 12555996 - MGP_AJ_P0043267 Spidr protein_coding protein_coding MGP_AJ_T0045354.1 MGP_AJ_G0023055.1 mouse_genomes_project 16 93221108 93280342 + MGP_AJ_P0045354 Pcp4 protein_coding protein_coding MGP_AJ_T0044672.1 MGP_AJ_G0022854.1 mouse_genomes_project 16 52807599 52809362 + Senp7 protein_coding processed_transcript MGP_AJ_T0044673.1 MGP_AJ_G0022854.1 mouse_genomes_project 16 52807604 52858282 + MGP_AJ_P0044673 Senp7 protein_coding protein_coding MGP_AJ_T0044674.1 MGP_AJ_G0022854.1 mouse_genomes_project 16 52807604 52923999 + MGP_AJ_P0044674 Senp7 protein_coding protein_coding MGP_AJ_T0044675.1 MGP_AJ_G0022854.1 mouse_genomes_project 16 52807659 52858277 + Senp7 protein_coding processed_transcript MGP_AJ_T0044676.1 MGP_AJ_G0022854.1 mouse_genomes_project 16 52807663 52924000 + MGP_AJ_P0044676 Senp7 protein_coding protein_coding MGP_AJ_T0044677.1 MGP_AJ_G0022854.1 mouse_genomes_project 16 52807670 52832145 + Senp7 protein_coding retained_intron MGP_AJ_T0044678.1 MGP_AJ_G0022854.1 mouse_genomes_project 16 52807670 52871233 + MGP_AJ_P0044678 Senp7 protein_coding protein_coding MGP_AJ_T0044679.1 MGP_AJ_G0022854.1 mouse_genomes_project 16 52807675 52858158 + Senp7 protein_coding processed_transcript MGP_AJ_T0044680.1 MGP_AJ_G0022854.1 mouse_genomes_project 16 52807675 52874087 + MGP_AJ_P0044680 Senp7 protein_coding protein_coding MGP_AJ_T0044681.1 MGP_AJ_G0022854.1 mouse_genomes_project 16 52914014 52922718 + Senp7 protein_coding retained_intron MGP_AJ_T0044682.1 MGP_AJ_G0022854.1 mouse_genomes_project 16 52914488 52922327 + Senp7 protein_coding retained_intron MGP_AJ_T0044683.1 MGP_AJ_G0022854.1 mouse_genomes_project 16 52916473 52923972 + Senp7 protein_coding processed_transcript MGP_AJ_T0044684.1 MGP_AJ_G0022854.1 mouse_genomes_project 16 52917650 52922232 + Senp7 protein_coding processed_transcript MGP_AJ_T0044685.1 MGP_AJ_G0022854.1 mouse_genomes_project 16 52920116 52922707 + Senp7 protein_coding processed_transcript MGP_AJ_T0045221.1 MGP_AJ_G0023035.1 mouse_genomes_project 16 90828954 90870340 + MGP_AJ_P0045221 Sim2 protein_coding protein_coding MGP_AJ_T0017526.1 MGP_AJ_G0015305.1 mouse_genomes_project 16 88382964 88409833 + Gm10785 processed_transcript processed_transcript MGP_AJ_T0043118.1 MGP_AJ_G0022480.1 mouse_genomes_project 16 7371044 7407067 - MGP_AJ_P0043118 Litaf protein_coding protein_coding MGP_AJ_T0043119.1 MGP_AJ_G0022480.1 mouse_genomes_project 16 7372593 7389658 - MGP_AJ_P0043119 Litaf protein_coding protein_coding MGP_AJ_T0043120.1 MGP_AJ_G0022480.1 mouse_genomes_project 16 7376268 7478283 - MGP_AJ_P0043120 Litaf protein_coding protein_coding MGP_AJ_T0043121.1 MGP_AJ_G0022480.1 mouse_genomes_project 16 7379341 7407017 - Litaf protein_coding retained_intron MGP_AJ_T0010124.1 MGP_AJ_G0008246.1 mouse_genomes_project 16 16358852 16358954 - Gm27883 miRNA miRNA MGP_AJ_T0044099.1 MGP_AJ_G0022709.1 mouse_genomes_project 16 29369909 29418451 + protein_coding processed_transcript MGP_AJ_T0044100.1 MGP_AJ_G0022709.1 mouse_genomes_project 16 29392499 29418610 + MGP_AJ_P0044100 protein_coding protein_coding MGP_AJ_T0044101.1 MGP_AJ_G0022709.1 mouse_genomes_project 16 29412558 29418603 + protein_coding processed_transcript MGP_AJ_T0044102.1 MGP_AJ_G0022709.1 mouse_genomes_project 16 29412637 29413226 + protein_coding processed_transcript MGP_AJ_T0044104.1 MGP_AJ_G0022709.1 mouse_genomes_project 16 29413802 29415198 + protein_coding retained_intron MGP_AJ_T0044105.1 MGP_AJ_G0022709.1 mouse_genomes_project 16 29414888 29415401 + protein_coding retained_intron MGP_AJ_T0045100.1 MGP_AJ_G0023014.1 mouse_genomes_project 16 88340831 88373259 + MGP_AJ_P0045100 Son protein_coding protein_coding MGP_AJ_T0045101.1 MGP_AJ_G0023014.1 mouse_genomes_project 16 88341205 88359032 + MGP_AJ_P0045101 Son protein_coding protein_coding MGP_AJ_T0045102.1 MGP_AJ_G0023014.1 mouse_genomes_project 16 88341205 88373247 + MGP_AJ_P0045102 Son protein_coding protein_coding MGP_AJ_T0045103.1 MGP_AJ_G0023014.1 mouse_genomes_project 16 88341205 88373247 + MGP_AJ_P0045103 Son protein_coding nonsense_mediated_decay MGP_AJ_T0045104.1 MGP_AJ_G0023014.1 mouse_genomes_project 16 88341206 88357357 + MGP_AJ_P0045104 Son protein_coding protein_coding MGP_AJ_T0045105.1 MGP_AJ_G0023014.1 mouse_genomes_project 16 88341211 88373273 + MGP_AJ_P0045105 Son protein_coding protein_coding MGP_AJ_T0045106.1 MGP_AJ_G0023014.1 mouse_genomes_project 16 88353269 88373244 + MGP_AJ_P0045106 Son protein_coding nonsense_mediated_decay MGP_AJ_T0045107.1 MGP_AJ_G0023014.1 mouse_genomes_project 16 88357543 88366196 + Son protein_coding processed_transcript MGP_AJ_T0045108.1 MGP_AJ_G0023014.1 mouse_genomes_project 16 88365404 88366765 + Son protein_coding processed_transcript MGP_AJ_T0045109.1 MGP_AJ_G0023014.1 mouse_genomes_project 16 88367495 88371664 + Son protein_coding processed_transcript MGP_AJ_T0045110.1 MGP_AJ_G0023014.1 mouse_genomes_project 16 88367725 88372172 + Son protein_coding processed_transcript MGP_AJ_T0045111.1 MGP_AJ_G0023014.1 mouse_genomes_project 16 88368161 88372553 + Son protein_coding processed_transcript MGP_AJ_T0045112.1 MGP_AJ_G0023014.1 mouse_genomes_project 16 88368986 88371486 + Son protein_coding retained_intron MGP_AJ_T0043799.1 MGP_AJ_G0022626.1 mouse_genomes_project 16 18474833 18519188 - MGP_AJ_P0043799 Liph protein_coding protein_coding MGP_AJ_T0043800.1 MGP_AJ_G0022626.1 mouse_genomes_project 16 18474833 18519188 - MGP_AJ_P0043800 Liph protein_coding protein_coding MGP_AJ_T0044128.1 MGP_AJ_G0022714.1 mouse_genomes_project 16 29555839 29680448 + MGP_AJ_P0044128 Lrch3 protein_coding protein_coding MGP_AJ_T0044129.1 MGP_AJ_G0022714.1 mouse_genomes_project 16 29555861 29677944 + MGP_AJ_P0044129 Lrch3 protein_coding protein_coding MGP_AJ_T0044130.1 MGP_AJ_G0022714.1 mouse_genomes_project 16 29555861 29677944 + MGP_AJ_P0044130 Lrch3 protein_coding protein_coding MGP_AJ_T0044131.1 MGP_AJ_G0022714.1 mouse_genomes_project 16 29555862 29654231 + Lrch3 protein_coding retained_intron MGP_AJ_T0044132.1 MGP_AJ_G0022714.1 mouse_genomes_project 16 29555866 29639082 + MGP_AJ_P0044132 Lrch3 protein_coding nonsense_mediated_decay MGP_AJ_T0044133.1 MGP_AJ_G0022714.1 mouse_genomes_project 16 29555881 29677291 + MGP_AJ_P0044133 Lrch3 protein_coding protein_coding MGP_AJ_T0044134.1 MGP_AJ_G0022714.1 mouse_genomes_project 16 29555881 29677500 + MGP_AJ_P0044134 Lrch3 protein_coding protein_coding MGP_AJ_T0044135.1 MGP_AJ_G0022714.1 mouse_genomes_project 16 29619975 29627031 + Lrch3 protein_coding processed_transcript MGP_AJ_T0044136.1 MGP_AJ_G0022714.1 mouse_genomes_project 16 29644530 29663748 + MGP_AJ_P0044136 Lrch3 protein_coding protein_coding MGP_AJ_T0044137.1 MGP_AJ_G0022714.1 mouse_genomes_project 16 29644558 29663690 + MGP_AJ_P0044137 Lrch3 protein_coding protein_coding MGP_AJ_T0044138.1 MGP_AJ_G0022714.1 mouse_genomes_project 16 29651168 29663801 + MGP_AJ_P0044138 Lrch3 protein_coding protein_coding MGP_AJ_T0013203.1 MGP_AJ_G0011298.1 mouse_genomes_project 16 91359721 91359932 + processed_pseudogene processed_pseudogene MGP_AJ_T0045176.1 MGP_AJ_G0023024.1 mouse_genomes_project 16 89050154 89063740 - MGP_AJ_P0045176 Kcne1 protein_coding protein_coding MGP_AJ_T0045177.1 MGP_AJ_G0023024.1 mouse_genomes_project 16 89052713 89063146 - MGP_AJ_P0045177 Kcne1 protein_coding protein_coding MGP_AJ_T0003697.1 MGP_AJ_G0003337.1 mouse_genomes_project 16 92817859 92824252 + 1700093J21Rik antisense antisense MGP_AJ_T0099636.1 MGP_AJ_G0037602.1 mouse_genomes_project 16 88036759 88036842 - Gm24695 snRNA snRNA MGP_AJ_T0003699.1 MGP_AJ_G0003339.1 mouse_genomes_project 16 92883959 92886072 - Gm15317 antisense antisense MGP_AJ_T0043354.1 MGP_AJ_G0022530.1 mouse_genomes_project 16 13526197 13539334 - MGP_AJ_P0043354 2610318N02Rik protein_coding protein_coding MGP_AJ_T0043222.1 MGP_AJ_G0022500.1 mouse_genomes_project 16 10314215 10354609 + MGP_AJ_P0043222 Mpv17l protein_coding protein_coding MGP_AJ_T0043223.1 MGP_AJ_G0022500.1 mouse_genomes_project 16 10345585 10353677 + MGP_AJ_P0043223 Mpv17l protein_coding protein_coding MGP_AJ_T0043224.1 MGP_AJ_G0022500.1 mouse_genomes_project 16 10345650 10353536 + MGP_AJ_P0043224 Mpv17l protein_coding nonsense_mediated_decay MGP_AJ_T0043225.1 MGP_AJ_G0022500.1 mouse_genomes_project 16 10345657 10351833 + MGP_AJ_P0043225 Mpv17l protein_coding protein_coding MGP_AJ_T0043226.1 MGP_AJ_G0022500.1 mouse_genomes_project 16 10345669 10351879 + MGP_AJ_P0043226 Mpv17l protein_coding protein_coding MGP_AJ_T0043227.1 MGP_AJ_G0022500.1 mouse_genomes_project 16 10346049 10351799 + MGP_AJ_P0043227 Mpv17l protein_coding protein_coding MGP_AJ_T0100902.1 MGP_AJ_G0038868.1 mouse_genomes_project 16 76821180 76821296 + Gm23083 snoRNA snoRNA MGP_AJ_T0043980.1 MGP_AJ_G0022678.1 mouse_genomes_project 16 27204052 27207179 + MGP_AJ_P0043980 Fam43a protein_coding protein_coding MGP_AJ_T0044847.1 MGP_AJ_G0022919.1 mouse_genomes_project 16 70604303 71113423 - MGP_AJ_P0044847 Robo2 protein_coding protein_coding MGP_AJ_T0044848.1 MGP_AJ_G0022919.1 mouse_genomes_project 16 70606353 71113726 - MGP_AJ_P0044848 Robo2 protein_coding protein_coding MGP_AJ_T0044849.1 MGP_AJ_G0022919.1 mouse_genomes_project 16 70606661 70611874 - Robo2 protein_coding retained_intron MGP_AJ_T0044850.1 MGP_AJ_G0022919.1 mouse_genomes_project 16 70607822 71113346 - MGP_AJ_P0044850 Robo2 protein_coding unknown_likely_coding MGP_AJ_T0044851.1 MGP_AJ_G0022919.1 mouse_genomes_project 16 70609025 70622256 - Robo2 protein_coding processed_transcript MGP_AJ_T0044852.1 MGP_AJ_G0022919.1 mouse_genomes_project 16 70635358 71114219 - MGP_AJ_P0044852 Robo2 protein_coding protein_coding MGP_AJ_T0044853.1 MGP_AJ_G0022919.1 mouse_genomes_project 16 70635613 70648225 - Robo2 protein_coding retained_intron MGP_AJ_T0044854.1 MGP_AJ_G0022919.1 mouse_genomes_project 16 70698074 70737322 - Robo2 protein_coding processed_transcript MGP_AJ_T0044855.1 MGP_AJ_G0022919.1 mouse_genomes_project 16 70755052 71113871 - Robo2 protein_coding retained_intron MGP_AJ_T0044856.1 MGP_AJ_G0022919.1 mouse_genomes_project 16 71057774 71114259 - Robo2 protein_coding retained_intron MGP_AJ_T0044103.1 MGP_AJ_G0022710.1 mouse_genomes_project 16 29413684 29433568 - MGP_AJ_P0044103 Muc20 protein_coding protein_coding MGP_AJ_T0044106.1 MGP_AJ_G0022710.1 mouse_genomes_project 16 29422243 29433568 - MGP_AJ_P0044106 Muc20 protein_coding protein_coding MGP_AJ_T0013157.1 MGP_AJ_G0011252.1 mouse_genomes_project 16 28599838 28600283 - processed_pseudogene processed_pseudogene MGP_AJ_T0044637.1 MGP_AJ_G0022843.1 mouse_genomes_project 16 47344348 47345644 - MGP_AJ_P0044637 Ccdc54 protein_coding protein_coding MGP_AJ_T0044332.1 MGP_AJ_G0022765.1 mouse_genomes_project 16 34183698 34214703 - MGP_AJ_P0044332 Gtf2e1 protein_coding protein_coding MGP_AJ_T0044333.1 MGP_AJ_G0022765.1 mouse_genomes_project 16 34207433 34214690 - Gtf2e1 protein_coding retained_intron MGP_AJ_T0044258.1 MGP_AJ_G0022752.1 mouse_genomes_project 16 33014821 33025025 - MGP_AJ_P0044258 protein_coding protein_coding MGP_AJ_T0043439.1 MGP_AJ_G0022548.1 mouse_genomes_project 16 14052402 14078975 + MGP_AJ_P0043439 Smpd4 protein_coding protein_coding MGP_AJ_T0043440.1 MGP_AJ_G0022548.1 mouse_genomes_project 16 14052405 14073422 + Smpd4 protein_coding processed_transcript MGP_AJ_T0043441.1 MGP_AJ_G0022548.1 mouse_genomes_project 16 14052405 14078974 + MGP_AJ_P0043441 Smpd4 protein_coding protein_coding MGP_AJ_T0043442.1 MGP_AJ_G0022548.1 mouse_genomes_project 16 14052405 14060540 + MGP_AJ_P0043442 Smpd4 protein_coding protein_coding MGP_AJ_T0043443.1 MGP_AJ_G0022548.1 mouse_genomes_project 16 14052408 14060742 + MGP_AJ_P0043443 Smpd4 protein_coding protein_coding MGP_AJ_T0043444.1 MGP_AJ_G0022548.1 mouse_genomes_project 16 14052408 14077494 + MGP_AJ_P0043444 Smpd4 protein_coding protein_coding MGP_AJ_T0043445.1 MGP_AJ_G0022548.1 mouse_genomes_project 16 14052411 14058378 + Smpd4 protein_coding retained_intron MGP_AJ_T0043446.1 MGP_AJ_G0022548.1 mouse_genomes_project 16 14052411 14078974 + Smpd4 protein_coding retained_intron MGP_AJ_T0043447.1 MGP_AJ_G0022548.1 mouse_genomes_project 16 14052411 14055052 + Smpd4 protein_coding retained_intron MGP_AJ_T0043448.1 MGP_AJ_G0022548.1 mouse_genomes_project 16 14052411 14078974 + MGP_AJ_P0043448 Smpd4 protein_coding protein_coding MGP_AJ_T0043449.1 MGP_AJ_G0022548.1 mouse_genomes_project 16 14052411 14059934 + MGP_AJ_P0043449 Smpd4 protein_coding protein_coding MGP_AJ_T0043450.1 MGP_AJ_G0022548.1 mouse_genomes_project 16 14052422 14072672 + MGP_AJ_P0043450 Smpd4 protein_coding nonsense_mediated_decay MGP_AJ_T0043451.1 MGP_AJ_G0022548.1 mouse_genomes_project 16 14052425 14060779 + MGP_AJ_P0043451 Smpd4 protein_coding protein_coding MGP_AJ_T0043452.1 MGP_AJ_G0022548.1 mouse_genomes_project 16 14052429 14076295 + Smpd4 protein_coding retained_intron MGP_AJ_T0043453.1 MGP_AJ_G0022548.1 mouse_genomes_project 16 14052437 14060098 + MGP_AJ_P0043453 Smpd4 protein_coding protein_coding MGP_AJ_T0043454.1 MGP_AJ_G0022548.1 mouse_genomes_project 16 14052565 14058040 + MGP_AJ_P0043454 Smpd4 protein_coding protein_coding MGP_AJ_T0043455.1 MGP_AJ_G0022548.1 mouse_genomes_project 16 14054535 14076950 + MGP_AJ_P0043455 Smpd4 protein_coding protein_coding MGP_AJ_T0043456.1 MGP_AJ_G0022548.1 mouse_genomes_project 16 14054535 14076950 + MGP_AJ_P0043456 Smpd4 protein_coding nonsense_mediated_decay MGP_AJ_T0043457.1 MGP_AJ_G0022548.1 mouse_genomes_project 16 14054535 14076950 + MGP_AJ_P0043457 Smpd4 protein_coding protein_coding MGP_AJ_T0043458.1 MGP_AJ_G0022548.1 mouse_genomes_project 16 14054535 14076950 + MGP_AJ_P0043458 Smpd4 protein_coding protein_coding MGP_AJ_T0043459.1 MGP_AJ_G0022548.1 mouse_genomes_project 16 14054535 14076950 + MGP_AJ_P0043459 Smpd4 protein_coding protein_coding MGP_AJ_T0043460.1 MGP_AJ_G0022548.1 mouse_genomes_project 16 14072468 14075209 + Smpd4 protein_coding retained_intron MGP_AJ_T0043461.1 MGP_AJ_G0022548.1 mouse_genomes_project 16 14072733 14075113 + Smpd4 protein_coding retained_intron MGP_AJ_T0044070.1 MGP_AJ_G0022704.1 mouse_genomes_project 16 29062739 29106713 + MGP_AJ_P0044070 Pcyt1a protein_coding protein_coding MGP_AJ_T0044071.1 MGP_AJ_G0022704.1 mouse_genomes_project 16 29062749 29083981 + Pcyt1a protein_coding retained_intron MGP_AJ_T0044072.1 MGP_AJ_G0022704.1 mouse_genomes_project 16 29062771 29087169 + Pcyt1a protein_coding retained_intron MGP_AJ_T0044073.1 MGP_AJ_G0022704.1 mouse_genomes_project 16 29062831 29087039 + Pcyt1a protein_coding retained_intron MGP_AJ_T0043958.1 MGP_AJ_G0022675.1 mouse_genomes_project 16 26906566 26985293 - MGP_AJ_P0043958 Atp13a3 protein_coding protein_coding MGP_AJ_T0043959.1 MGP_AJ_G0022675.1 mouse_genomes_project 16 26906566 26985293 - MGP_AJ_P0043959 Atp13a3 protein_coding protein_coding MGP_AJ_T0043960.1 MGP_AJ_G0022675.1 mouse_genomes_project 16 26949409 26952484 - Atp13a3 protein_coding retained_intron MGP_AJ_T0043961.1 MGP_AJ_G0022675.1 mouse_genomes_project 16 26956888 26985248 - Atp13a3 protein_coding retained_intron MGP_AJ_T0043962.1 MGP_AJ_G0022675.1 mouse_genomes_project 16 26982650 26985600 - Atp13a3 protein_coding retained_intron MGP_AJ_T0013174.1 MGP_AJ_G0011269.1 mouse_genomes_project 16 40102030 40103155 + processed_pseudogene processed_pseudogene MGP_AJ_T0044377.1 MGP_AJ_G0022782.1 mouse_genomes_project 16 35190383 35214495 - MGP_AJ_P0044377 Timmdc1 protein_coding protein_coding MGP_AJ_T0044378.1 MGP_AJ_G0022782.1 mouse_genomes_project 16 35208501 35214473 - Timmdc1 protein_coding processed_transcript MGP_AJ_T0006884.1 MGP_AJ_G0005667.1 mouse_genomes_project 16 88006874 88015398 - Gm15966 lincRNA lincRNA MGP_AJ_T0006885.1 MGP_AJ_G0005667.1 mouse_genomes_project 16 88007099 88012163 - Gm15966 lincRNA lincRNA MGP_AJ_T0044775.1 MGP_AJ_G0022887.1 mouse_genomes_project 16 55920761 55921873 + MGP_AJ_P0044775 Olfr195 protein_coding protein_coding MGP_AJ_T0043472.1 MGP_AJ_G0022550.1 mouse_genomes_project 16 14085367 14156063 - MGP_AJ_P0043472 Med15 protein_coding protein_coding MGP_AJ_T0043473.1 MGP_AJ_G0022550.1 mouse_genomes_project 16 14085367 14156063 - MGP_AJ_P0043473 Med15 protein_coding protein_coding MGP_AJ_T0006832.1 MGP_AJ_G0005628.1 mouse_genomes_project 16 9214784 9250471 + 1700003L19Rik lincRNA lincRNA MGP_AJ_T0043232.1 MGP_AJ_G0022504.1 mouse_genomes_project 16 10573086 10602549 + MGP_AJ_P0043232 Nde1 protein_coding protein_coding MGP_AJ_T0043233.1 MGP_AJ_G0022504.1 mouse_genomes_project 16 10573098 10602449 + MGP_AJ_P0043233 Nde1 protein_coding protein_coding MGP_AJ_T0043234.1 MGP_AJ_G0022504.1 mouse_genomes_project 16 10573109 10602539 + MGP_AJ_P0043234 Nde1 protein_coding nonsense_mediated_decay MGP_AJ_T0043235.1 MGP_AJ_G0022504.1 mouse_genomes_project 16 10573115 10580497 + Nde1 protein_coding retained_intron MGP_AJ_T0043236.1 MGP_AJ_G0022504.1 mouse_genomes_project 16 10573156 10602539 + MGP_AJ_P0043236 Nde1 protein_coding protein_coding MGP_AJ_T0043237.1 MGP_AJ_G0022504.1 mouse_genomes_project 16 10573160 10600061 + Nde1 protein_coding processed_transcript MGP_AJ_T0043238.1 MGP_AJ_G0022504.1 mouse_genomes_project 16 10584790 10598018 + Nde1 protein_coding retained_intron MGP_AJ_T0043239.1 MGP_AJ_G0022504.1 mouse_genomes_project 16 10593227 10600141 + MGP_AJ_P0043239 Nde1 protein_coding protein_coding MGP_AJ_T0010142.1 MGP_AJ_G0008264.1 mouse_genomes_project 16 40812660 40812786 + Mir3470b miRNA miRNA MGP_AJ_T0003680.1 MGP_AJ_G0003325.1 mouse_genomes_project 16 38185713 38204931 - Gm28750 antisense antisense MGP_AJ_T0043014.1 MGP_AJ_G0022449.1 mouse_genomes_project 16 1555850 1566314 - MGP_AJ_P0043014 AU021092 protein_coding protein_coding MGP_AJ_T0006866.1 MGP_AJ_G0005655.1 mouse_genomes_project 16 47552744 47553427 + 1700116B05Rik lincRNA lincRNA MGP_AJ_T0006867.1 MGP_AJ_G0005655.1 mouse_genomes_project 16 47552813 47553401 + 1700116B05Rik lincRNA lincRNA MGP_AJ_T0043628.1 MGP_AJ_G0022588.1 mouse_genomes_project 16 15930694 15931247 + MGP_AJ_P0043628 protein_coding protein_coding MGP_AJ_T0043901.1 MGP_AJ_G0022656.1 mouse_genomes_project 16 23051993 23074260 + MGP_AJ_P0043901 Cldn16 protein_coding protein_coding MGP_AJ_T0043902.1 MGP_AJ_G0022656.1 mouse_genomes_project 16 23052114 23074258 + MGP_AJ_P0043902 Cldn16 protein_coding protein_coding MGP_AJ_T0044441.1 MGP_AJ_G0022795.1 mouse_genomes_project 16 40659232 40688001 - MGP_AJ_P0044441 Qtrtd1 protein_coding unknown_likely_coding MGP_AJ_T0044442.1 MGP_AJ_G0022795.1 mouse_genomes_project 16 40659235 40688014 - Qtrtd1 protein_coding retained_intron MGP_AJ_T0044443.1 MGP_AJ_G0022795.1 mouse_genomes_project 16 40659235 40688051 - MGP_AJ_P0044443 Qtrtd1 protein_coding protein_coding MGP_AJ_T0044444.1 MGP_AJ_G0022795.1 mouse_genomes_project 16 40660612 40665626 - Qtrtd1 protein_coding retained_intron MGP_AJ_T0044445.1 MGP_AJ_G0022795.1 mouse_genomes_project 16 40660858 40724576 - Qtrtd1 protein_coding retained_intron MGP_AJ_T0044446.1 MGP_AJ_G0022795.1 mouse_genomes_project 16 40665577 40667466 - Qtrtd1 protein_coding retained_intron MGP_AJ_T0044447.1 MGP_AJ_G0022795.1 mouse_genomes_project 16 40667016 40688022 - Qtrtd1 protein_coding retained_intron MGP_AJ_T0044448.1 MGP_AJ_G0022795.1 mouse_genomes_project 16 40669787 40675194 - Qtrtd1 protein_coding retained_intron MGP_AJ_T0044449.1 MGP_AJ_G0022795.1 mouse_genomes_project 16 40675012 40688021 - MGP_AJ_P0044449 Qtrtd1 protein_coding nonsense_mediated_decay MGP_AJ_T0044450.1 MGP_AJ_G0022795.1 mouse_genomes_project 16 40678532 40688022 - Qtrtd1 protein_coding retained_intron MGP_AJ_T0010123.1 MGP_AJ_G0008245.1 mouse_genomes_project 16 15776536 15776646 + Gm23612 miRNA miRNA MGP_AJ_T0043801.1 MGP_AJ_G0022627.1 mouse_genomes_project 16 18533476 18572423 + MGP_AJ_P0043801 Senp2 protein_coding protein_coding MGP_AJ_T0098606.1 MGP_AJ_G0036590.1 mouse_genomes_project 16 12415766 12415876 - n-R5s31 rRNA rRNA MGP_AJ_T0013137.1 MGP_AJ_G0011232.1 mouse_genomes_project 16 14144800 14145238 + processed_pseudogene processed_pseudogene MGP_AJ_T0044198.1 MGP_AJ_G0022727.1 mouse_genomes_project 16 31324082 31353201 + MGP_AJ_P0044198 Ropn1 protein_coding protein_coding MGP_AJ_T0044199.1 MGP_AJ_G0022727.1 mouse_genomes_project 16 31325349 31354618 + MGP_AJ_P0044199 Ropn1 protein_coding protein_coding MGP_AJ_T0043888.1 MGP_AJ_G0022653.1 mouse_genomes_project 16 22282047 22422294 + MGP_AJ_P0043888 Trp63 protein_coding protein_coding MGP_AJ_T0043889.1 MGP_AJ_G0022653.1 mouse_genomes_project 16 22282049 22478323 + MGP_AJ_P0043889 Trp63 protein_coding protein_coding MGP_AJ_T0043890.1 MGP_AJ_G0022653.1 mouse_genomes_project 16 22282049 22493266 + MGP_AJ_P0043890 Trp63 protein_coding protein_coding MGP_AJ_T0043891.1 MGP_AJ_G0022653.1 mouse_genomes_project 16 22282049 22493281 + MGP_AJ_P0043891 Trp63 protein_coding protein_coding MGP_AJ_T0043892.1 MGP_AJ_G0022653.1 mouse_genomes_project 16 22402897 22493281 + MGP_AJ_P0043892 Trp63 protein_coding protein_coding MGP_AJ_T0043893.1 MGP_AJ_G0022653.1 mouse_genomes_project 16 22402897 22493281 + MGP_AJ_P0043893 Trp63 protein_coding protein_coding MGP_AJ_T0043894.1 MGP_AJ_G0022653.1 mouse_genomes_project 16 22402897 22478323 + MGP_AJ_P0043894 Trp63 protein_coding protein_coding MGP_AJ_T0043895.1 MGP_AJ_G0022653.1 mouse_genomes_project 16 22402897 22469044 + MGP_AJ_P0043895 Trp63 protein_coding protein_coding MGP_AJ_T0042986.1 MGP_AJ_G0022441.1 mouse_genomes_project 16 1318379 1330553 - MGP_AJ_P0042986 Sept12 protein_coding protein_coding MGP_AJ_T0044782.1 MGP_AJ_G0022894.1 mouse_genomes_project 16 56093616 56094683 - MGP_AJ_P0044782 Olfr204 protein_coding protein_coding MGP_AJ_T0045173.1 MGP_AJ_G0023022.1 mouse_genomes_project 16 89004855 89016853 + MGP_AJ_P0045173 Smim11 protein_coding protein_coding MGP_AJ_T0045174.1 MGP_AJ_G0023022.1 mouse_genomes_project 16 89004865 89015236 + MGP_AJ_P0045174 Smim11 protein_coding protein_coding MGP_AJ_T0006843.1 MGP_AJ_G0005636.1 mouse_genomes_project 16 18431474 18432330 - 2610020F03Rik lincRNA lincRNA MGP_AJ_T0043485.1 MGP_AJ_G0022555.1 mouse_genomes_project 16 14274757 14327340 - protein_coding retained_intron MGP_AJ_T0043486.1 MGP_AJ_G0022555.1 mouse_genomes_project 16 14275630 14327346 - MGP_AJ_P0043486 protein_coding protein_coding MGP_AJ_T0043487.1 MGP_AJ_G0022555.1 mouse_genomes_project 16 14275630 14327379 - MGP_AJ_P0043487 protein_coding protein_coding MGP_AJ_T0043488.1 MGP_AJ_G0022555.1 mouse_genomes_project 16 14275636 14327343 - MGP_AJ_P0043488 protein_coding protein_coding MGP_AJ_T0043489.1 MGP_AJ_G0022555.1 mouse_genomes_project 16 14276585 14327279 - MGP_AJ_P0043489 protein_coding protein_coding MGP_AJ_T0043490.1 MGP_AJ_G0022555.1 mouse_genomes_project 16 14284586 14327335 - protein_coding retained_intron MGP_AJ_T0043491.1 MGP_AJ_G0022555.1 mouse_genomes_project 16 14292718 14329785 - protein_coding processed_transcript MGP_AJ_T0043492.1 MGP_AJ_G0022555.1 mouse_genomes_project 16 14328260 14329831 - protein_coding processed_transcript MGP_AJ_T0044143.1 MGP_AJ_G0022716.1 mouse_genomes_project 16 29726559 29730292 + MGP_AJ_P0044143 Rpl35a protein_coding protein_coding MGP_AJ_T0044144.1 MGP_AJ_G0022716.1 mouse_genomes_project 16 29726572 29730279 + MGP_AJ_P0044144 Rpl35a protein_coding protein_coding MGP_AJ_T0044145.1 MGP_AJ_G0022716.1 mouse_genomes_project 16 29726588 29730278 + Rpl35a protein_coding retained_intron MGP_AJ_T0044146.1 MGP_AJ_G0022716.1 mouse_genomes_project 16 29726630 29727637 + Rpl35a protein_coding retained_intron MGP_AJ_T0044147.1 MGP_AJ_G0022716.1 mouse_genomes_project 16 29726633 29730268 + MGP_AJ_P0044147 Rpl35a protein_coding protein_coding MGP_AJ_T0044148.1 MGP_AJ_G0022716.1 mouse_genomes_project 16 29726912 29730278 + MGP_AJ_P0044148 Rpl35a protein_coding protein_coding MGP_AJ_T0044149.1 MGP_AJ_G0022716.1 mouse_genomes_project 16 29727124 29730259 + MGP_AJ_P0044149 Rpl35a protein_coding protein_coding MGP_AJ_T0011412.1 MGP_AJ_G0009534.1 mouse_genomes_project 16 44546883 44547115 + Gm25339 misc_RNA misc_RNA MGP_AJ_T0013196.1 MGP_AJ_G0011291.1 mouse_genomes_project 16 75653268 75653627 + processed_pseudogene processed_pseudogene MGP_AJ_T0013116.1 MGP_AJ_G0011211.1 mouse_genomes_project 16 253918 254484 + processed_pseudogene processed_pseudogene MGP_AJ_T0044927.1 MGP_AJ_G0022944.1 mouse_genomes_project 16 84028842 84084976 - MGP_AJ_P0044927 Ltn1 protein_coding protein_coding MGP_AJ_T0102359.1 MGP_AJ_G0040101.1 mouse_genomes_project 16 19553625 19556829 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0043647.1 MGP_AJ_G0022598.1 mouse_genomes_project 16 16570259 16600870 + MGP_AJ_P0043647 Klhl24 protein_coding protein_coding MGP_AJ_T0043648.1 MGP_AJ_G0022598.1 mouse_genomes_project 16 16570263 16600867 + MGP_AJ_P0043648 Klhl24 protein_coding unknown_likely_coding MGP_AJ_T0000020.1 MGP_AJ_G0000014.1 mouse_genomes_project 16 15655894 15656352 - MGP_AJ_P0000020 Iglc2 IG_C_gene IG_C_gene MGP_AJ_T0000021.1 MGP_AJ_G0000014.1 mouse_genomes_project 16 15655899 15657850 - MGP_AJ_P0000021 Iglc2 IG_C_gene IG_C_gene MGP_AJ_T0045189.1 MGP_AJ_G0023028.1 mouse_genomes_project 16 90309619 90337404 - Setd4 protein_coding retained_intron MGP_AJ_T0045190.1 MGP_AJ_G0023028.1 mouse_genomes_project 16 90309619 90337416 - MGP_AJ_P0045190 Setd4 protein_coding protein_coding MGP_AJ_T0045191.1 MGP_AJ_G0023028.1 mouse_genomes_project 16 90309620 90314626 - Setd4 protein_coding processed_transcript MGP_AJ_T0045192.1 MGP_AJ_G0023028.1 mouse_genomes_project 16 90309622 90315472 - Setd4 protein_coding retained_intron MGP_AJ_T0045193.1 MGP_AJ_G0023028.1 mouse_genomes_project 16 90309622 90337428 - MGP_AJ_P0045193 Setd4 protein_coding protein_coding MGP_AJ_T0045194.1 MGP_AJ_G0023028.1 mouse_genomes_project 16 90317346 90325600 - Setd4 protein_coding processed_transcript MGP_AJ_T0045195.1 MGP_AJ_G0023028.1 mouse_genomes_project 16 90317478 90337677 - Setd4 protein_coding processed_transcript MGP_AJ_T0045196.1 MGP_AJ_G0023028.1 mouse_genomes_project 16 90329811 90337428 - Setd4 protein_coding processed_transcript MGP_AJ_T0013191.1 MGP_AJ_G0011286.1 mouse_genomes_project 16 64321941 64322463 - processed_pseudogene processed_pseudogene MGP_AJ_T0045113.1 MGP_AJ_G0023015.1 mouse_genomes_project 16 88371319 88378487 - MGP_AJ_P0045113 Donson protein_coding protein_coding MGP_AJ_T0045114.1 MGP_AJ_G0023015.1 mouse_genomes_project 16 88373316 88382819 - Donson protein_coding retained_intron MGP_AJ_T0045115.1 MGP_AJ_G0023015.1 mouse_genomes_project 16 88373316 88382819 - MGP_AJ_P0045115 Donson protein_coding nonsense_mediated_decay MGP_AJ_T0045116.1 MGP_AJ_G0023015.1 mouse_genomes_project 16 88373316 88382819 - MGP_AJ_P0045116 Donson protein_coding protein_coding MGP_AJ_T0045117.1 MGP_AJ_G0023015.1 mouse_genomes_project 16 88373573 88382771 - MGP_AJ_P0045117 Donson protein_coding nonsense_mediated_decay MGP_AJ_T0045118.1 MGP_AJ_G0023015.1 mouse_genomes_project 16 88373573 88381929 - MGP_AJ_P0045118 Donson protein_coding nonsense_mediated_decay MGP_AJ_T0045119.1 MGP_AJ_G0023015.1 mouse_genomes_project 16 88373573 88381929 - MGP_AJ_P0045119 Donson protein_coding nonsense_mediated_decay MGP_AJ_T0045120.1 MGP_AJ_G0023015.1 mouse_genomes_project 16 88373879 88382757 - MGP_AJ_P0045120 Donson protein_coding protein_coding MGP_AJ_T0045121.1 MGP_AJ_G0023015.1 mouse_genomes_project 16 88373940 88382766 - MGP_AJ_P0045121 Donson protein_coding protein_coding MGP_AJ_T0044941.1 MGP_AJ_G0022947.1 mouse_genomes_project 16 84136055 84149214 - MGP_AJ_P0044941 Cct8 protein_coding protein_coding MGP_AJ_T0044942.1 MGP_AJ_G0022947.1 mouse_genomes_project 16 84136737 84149129 - MGP_AJ_P0044942 Cct8 protein_coding nonsense_mediated_decay MGP_AJ_T0044943.1 MGP_AJ_G0022947.1 mouse_genomes_project 16 84136737 84149129 - MGP_AJ_P0044943 Cct8 protein_coding protein_coding MGP_AJ_T0044944.1 MGP_AJ_G0022947.1 mouse_genomes_project 16 84137648 84142186 - MGP_AJ_P0044944 Cct8 protein_coding protein_coding MGP_AJ_T0044945.1 MGP_AJ_G0022947.1 mouse_genomes_project 16 84138701 84139333 - Cct8 protein_coding retained_intron MGP_AJ_T0044946.1 MGP_AJ_G0022947.1 mouse_genomes_project 16 84138841 84139618 - Cct8 protein_coding retained_intron MGP_AJ_T0044947.1 MGP_AJ_G0022947.1 mouse_genomes_project 16 84138989 84139760 - Cct8 protein_coding retained_intron MGP_AJ_T0044948.1 MGP_AJ_G0022947.1 mouse_genomes_project 16 84142187 84144791 - Cct8 protein_coding processed_transcript MGP_AJ_T0044949.1 MGP_AJ_G0022947.1 mouse_genomes_project 16 84142273 84149200 - MGP_AJ_P0044949 Cct8 protein_coding protein_coding MGP_AJ_T0044950.1 MGP_AJ_G0022947.1 mouse_genomes_project 16 84143830 84149045 - MGP_AJ_P0044950 Cct8 protein_coding protein_coding MGP_AJ_T0100863.1 MGP_AJ_G0038829.1 mouse_genomes_project 16 15764549 15764675 + Gm22158 snoRNA snoRNA MGP_AJ_T0003700.1 MGP_AJ_G0003340.1 mouse_genomes_project 16 94760703 94763538 - C030010L15Rik antisense antisense MGP_AJ_T0003701.1 MGP_AJ_G0003340.1 mouse_genomes_project 16 94760765 94761246 - C030010L15Rik antisense antisense MGP_AJ_T0013186.1 MGP_AJ_G0011281.1 mouse_genomes_project 16 57194901 57195304 - processed_pseudogene processed_pseudogene MGP_AJ_T0044463.1 MGP_AJ_G0022799.1 mouse_genomes_project 16 40884511 40939562 - MGP_AJ_P0044463 Atp6v1a protein_coding protein_coding MGP_AJ_T0044464.1 MGP_AJ_G0022799.1 mouse_genomes_project 16 40884754 40939453 - MGP_AJ_P0044464 Atp6v1a protein_coding protein_coding MGP_AJ_T0044465.1 MGP_AJ_G0022799.1 mouse_genomes_project 16 40896439 40939237 - Atp6v1a protein_coding retained_intron MGP_AJ_T0044466.1 MGP_AJ_G0022799.1 mouse_genomes_project 16 40909150 40939887 - MGP_AJ_P0044466 Atp6v1a protein_coding protein_coding MGP_AJ_T0044467.1 MGP_AJ_G0022799.1 mouse_genomes_project 16 40909273 40939275 - MGP_AJ_P0044467 Atp6v1a protein_coding protein_coding MGP_AJ_T0044468.1 MGP_AJ_G0022799.1 mouse_genomes_project 16 40911343 40939962 - MGP_AJ_P0044468 Atp6v1a protein_coding protein_coding MGP_AJ_T0010148.1 MGP_AJ_G0008270.1 mouse_genomes_project 16 55466863 55466959 - Gm27564 miRNA miRNA MGP_AJ_T0100870.1 MGP_AJ_G0038836.1 mouse_genomes_project 16 19679685 19679824 + Gm24616 snoRNA snoRNA MGP_AJ_T0099609.1 MGP_AJ_G0037575.1 mouse_genomes_project 16 32886563 32886667 - Gm25024 snRNA snRNA MGP_AJ_T0044778.1 MGP_AJ_G0022890.1 mouse_genomes_project 16 56033730 56034661 - MGP_AJ_P0044778 protein_coding protein_coding MGP_AJ_T0044818.1 MGP_AJ_G0022907.1 mouse_genomes_project 16 61218099 61219435 - MGP_AJ_P0044818 Csnka2ip protein_coding protein_coding MGP_AJ_T0044398.1 MGP_AJ_G0022785.1 mouse_genomes_project 16 35302860 35415665 - MGP_AJ_P0044398 Arhgap31 protein_coding protein_coding MGP_AJ_T0044399.1 MGP_AJ_G0022785.1 mouse_genomes_project 16 35327443 35415292 - Arhgap31 protein_coding processed_transcript MGP_AJ_T0044400.1 MGP_AJ_G0022785.1 mouse_genomes_project 16 35341525 35415291 - Arhgap31 protein_coding retained_intron MGP_AJ_T0098610.1 MGP_AJ_G0036594.1 mouse_genomes_project 16 37903570 37903662 + Gm26381 rRNA rRNA MGP_AJ_T0044751.1 MGP_AJ_G0022876.1 mouse_genomes_project 16 55516293 55517457 - MGP_AJ_P0044751 Olfr173 protein_coding protein_coding MGP_AJ_T0044752.1 MGP_AJ_G0022876.1 mouse_genomes_project 16 55516963 55520879 - MGP_AJ_P0044752 Olfr173 protein_coding protein_coding MGP_AJ_T0006831.1 MGP_AJ_G0005627.1 mouse_genomes_project 16 7618425 7640819 + 2610020C07Rik lincRNA lincRNA MGP_AJ_T0043880.1 MGP_AJ_G0022649.1 mouse_genomes_project 16 20513512 20518765 - MGP_AJ_P0043880 Rtp2 protein_coding protein_coding MGP_AJ_T0099587.1 MGP_AJ_G0037553.1 mouse_genomes_project 16 4680821 4680925 + Gm26159 snRNA snRNA MGP_AJ_T0044473.1 MGP_AJ_G0022801.1 mouse_genomes_project 16 40974236 41017576 + protein_coding retained_intron MGP_AJ_T0044474.1 MGP_AJ_G0022801.1 mouse_genomes_project 16 40974236 41014924 + MGP_AJ_P0044474 protein_coding protein_coding MGP_AJ_T0044475.1 MGP_AJ_G0022801.1 mouse_genomes_project 16 40997057 41029390 + MGP_AJ_P0044475 protein_coding unknown_likely_coding MGP_AJ_T0000949.1 MGP_AJ_G0000882.1 mouse_genomes_project 16 501555 504722 - TEC TEC MGP_AJ_T0044870.1 MGP_AJ_G0022924.1 mouse_genomes_project 16 72951891 73039123 - MGP_AJ_P0044870 Nrip1 protein_coding protein_coding MGP_AJ_T0044871.1 MGP_AJ_G0022924.1 mouse_genomes_project 16 72955353 73038344 - MGP_AJ_P0044871 Nrip1 protein_coding protein_coding MGP_AJ_T0044872.1 MGP_AJ_G0022924.1 mouse_genomes_project 16 72959137 72988243 - MGP_AJ_P0044872 Nrip1 protein_coding protein_coding MGP_AJ_T0044873.1 MGP_AJ_G0022924.1 mouse_genomes_project 16 72993398 73038332 - Nrip1 protein_coding retained_intron MGP_AJ_T0044874.1 MGP_AJ_G0022924.1 mouse_genomes_project 16 72993610 73038335 - Nrip1 protein_coding retained_intron MGP_AJ_T0044875.1 MGP_AJ_G0022924.1 mouse_genomes_project 16 73016734 73038344 - Nrip1 protein_coding retained_intron MGP_AJ_T0043778.1 MGP_AJ_G0022620.1 mouse_genomes_project 16 17730003 17748549 + MGP_AJ_P0043778 Ephb3 protein_coding protein_coding MGP_AJ_T0043779.1 MGP_AJ_G0022620.1 mouse_genomes_project 16 17736341 17748212 + MGP_AJ_P0043779 Ephb3 protein_coding nonsense_mediated_decay MGP_AJ_T0043780.1 MGP_AJ_G0022620.1 mouse_genomes_project 16 17742061 17748550 + Ephb3 protein_coding retained_intron MGP_AJ_T0043781.1 MGP_AJ_G0022620.1 mouse_genomes_project 16 17746930 17747932 + Ephb3 protein_coding retained_intron MGP_AJ_T0000976.1 MGP_AJ_G0000908.1 mouse_genomes_project 16 92494708 92495599 + TEC TEC MGP_AJ_T0043903.1 MGP_AJ_G0022657.1 mouse_genomes_project 16 23095711 23121977 - MGP_AJ_P0043903 Tmem207 protein_coding protein_coding MGP_AJ_T0044883.1 MGP_AJ_G0022930.1 mouse_genomes_project 16 75060719 75077124 - MGP_AJ_P0044883 protein_coding protein_coding MGP_AJ_T0044955.1 MGP_AJ_G0022950.1 mouse_genomes_project 16 84557697 84716365 - MGP_AJ_P0044955 Grik1 protein_coding protein_coding MGP_AJ_T0044956.1 MGP_AJ_G0022950.1 mouse_genomes_project 16 84557697 84743987 - MGP_AJ_P0044956 Grik1 protein_coding unknown_likely_coding MGP_AJ_T0044957.1 MGP_AJ_G0022950.1 mouse_genomes_project 16 84557697 84716365 - MGP_AJ_P0044957 Grik1 protein_coding protein_coding MGP_AJ_T0044958.1 MGP_AJ_G0022950.1 mouse_genomes_project 16 84557697 84716981 - MGP_AJ_P0044958 Grik1 protein_coding unknown_likely_coding MGP_AJ_T0044959.1 MGP_AJ_G0022950.1 mouse_genomes_project 16 84574343 84716365 - MGP_AJ_P0044959 Grik1 protein_coding protein_coding MGP_AJ_T0043981.1 MGP_AJ_G0022679.1 mouse_genomes_project 16 27562597 27687200 - MGP_AJ_P0043981 Xxylt1 protein_coding protein_coding MGP_AJ_T0043982.1 MGP_AJ_G0022679.1 mouse_genomes_project 16 27564431 27667346 - Xxylt1 protein_coding processed_transcript MGP_AJ_T0043983.1 MGP_AJ_G0022679.1 mouse_genomes_project 16 27614573 27675780 - Xxylt1 protein_coding processed_transcript MGP_AJ_T0043984.1 MGP_AJ_G0022679.1 mouse_genomes_project 16 27614615 27673782 - Xxylt1 protein_coding processed_transcript MGP_AJ_T0043616.1 MGP_AJ_G0022584.1 mouse_genomes_project 16 15332341 15384573 + MGP_AJ_P0043616 Hira protein_coding protein_coding MGP_AJ_T0043617.1 MGP_AJ_G0022584.1 mouse_genomes_project 16 15332370 15425760 + MGP_AJ_P0043617 Hira protein_coding protein_coding MGP_AJ_T0043618.1 MGP_AJ_G0022584.1 mouse_genomes_project 16 15332574 15366698 + Hira protein_coding retained_intron MGP_AJ_T0043619.1 MGP_AJ_G0022584.1 mouse_genomes_project 16 15332574 15391579 + MGP_AJ_P0043619 Hira protein_coding nonsense_mediated_decay MGP_AJ_T0043620.1 MGP_AJ_G0022584.1 mouse_genomes_project 16 15332716 15373134 + Hira protein_coding retained_intron MGP_AJ_T0043621.1 MGP_AJ_G0022584.1 mouse_genomes_project 16 15379620 15382205 + Hira protein_coding processed_transcript MGP_AJ_T0043622.1 MGP_AJ_G0022584.1 mouse_genomes_project 16 15382124 15391634 + Hira protein_coding retained_intron MGP_AJ_T0043623.1 MGP_AJ_G0022584.1 mouse_genomes_project 16 15389511 15404013 + Hira protein_coding processed_transcript MGP_AJ_T0010147.1 MGP_AJ_G0008269.1 mouse_genomes_project 16 52802769 52802873 + Gm24047 miRNA miRNA MGP_AJ_T0099588.1 MGP_AJ_G0037554.1 mouse_genomes_project 16 5123694 5123802 - Gm25805 snRNA snRNA MGP_AJ_T0044139.1 MGP_AJ_G0022715.1 mouse_genomes_project 16 29680187 29726300 - MGP_AJ_P0044139 Iqcg protein_coding protein_coding MGP_AJ_T0044140.1 MGP_AJ_G0022715.1 mouse_genomes_project 16 29681776 29688300 - Iqcg protein_coding processed_transcript MGP_AJ_T0044141.1 MGP_AJ_G0022715.1 mouse_genomes_project 16 29704677 29726328 - MGP_AJ_P0044141 Iqcg protein_coding protein_coding MGP_AJ_T0044142.1 MGP_AJ_G0022715.1 mouse_genomes_project 16 29717336 29726295 - Iqcg protein_coding retained_intron MGP_AJ_T0099589.1 MGP_AJ_G0037555.1 mouse_genomes_project 16 6634183 6634286 + Gm24667 snRNA snRNA MGP_AJ_T0000961.1 MGP_AJ_G0000894.1 mouse_genomes_project 16 74094215 74097321 + TEC TEC MGP_AJ_T0000962.1 MGP_AJ_G0000894.1 mouse_genomes_project 16 74095032 74095394 + TEC pseudogene MGP_AJ_T0000966.1 MGP_AJ_G0000898.1 mouse_genomes_project 16 74171952 74175487 + TEC TEC MGP_AJ_T0045361.1 MGP_AJ_G0023059.1 mouse_genomes_project 16 94239566 94244799 - Fam3b protein_coding processed_transcript MGP_AJ_T0045362.1 MGP_AJ_G0023059.1 mouse_genomes_project 16 94239600 94276378 - MGP_AJ_P0045362 Fam3b protein_coding protein_coding MGP_AJ_T0044776.1 MGP_AJ_G0022888.1 mouse_genomes_project 16 55939025 55939955 - MGP_AJ_P0044776 Olfr196 protein_coding protein_coding MGP_AJ_T0045363.1 MGP_AJ_G0023060.1 mouse_genomes_project 16 94336957 94383722 - MGP_AJ_P0045363 Tmprss2 protein_coding protein_coding MGP_AJ_T0043914.1 MGP_AJ_G0022661.1 mouse_genomes_project 16 23926208 23927113 - MGP_AJ_P0043914 protein_coding protein_coding MGP_AJ_T0003663.1 MGP_AJ_G0003312.1 mouse_genomes_project 16 28739438 28744317 + Gm15729 antisense antisense MGP_AJ_T0003670.1 MGP_AJ_G0003317.1 mouse_genomes_project 16 30655459 30656533 + Gm15829 antisense antisense MGP_AJ_T0006860.1 MGP_AJ_G0005652.1 mouse_genomes_project 16 46542967 46547309 + Gm16619 lincRNA lincRNA MGP_AJ_T0044625.1 MGP_AJ_G0022841.1 mouse_genomes_project 16 46601228 46662699 + MGP_AJ_P0044625 Cd47 protein_coding protein_coding MGP_AJ_T0044626.1 MGP_AJ_G0022841.1 mouse_genomes_project 16 46601397 46662708 + MGP_AJ_P0044626 Cd47 protein_coding unknown_likely_coding MGP_AJ_T0044627.1 MGP_AJ_G0022841.1 mouse_genomes_project 16 46613569 46658875 + MGP_AJ_P0044627 Cd47 protein_coding protein_coding MGP_AJ_T0098407.1 MGP_AJ_G0036391.1 mouse_genomes_project 16 12288555 12289736 + pseudogene pseudogene MGP_AJ_T0044990.1 MGP_AJ_G0022979.1 mouse_genomes_project 16 85749282 85749802 + MGP_AJ_P0044990 Krtap6-3 protein_coding protein_coding MGP_AJ_T0044991.1 MGP_AJ_G0022979.1 mouse_genomes_project 16 85749358 85749802 + MGP_AJ_P0044991 Krtap6-3 protein_coding protein_coding MGP_AJ_T0003653.1 MGP_AJ_G0003303.1 mouse_genomes_project 16 10722579 10724753 + Gm15868 antisense antisense MGP_AJ_T0043773.1 MGP_AJ_G0022618.1 mouse_genomes_project 16 17210184 17219439 + MGP_AJ_P0043773 Chrd protein_coding protein_coding MGP_AJ_T0043774.1 MGP_AJ_G0022618.1 mouse_genomes_project 16 17210184 17215210 + MGP_AJ_P0043774 Chrd protein_coding protein_coding MGP_AJ_T0043775.1 MGP_AJ_G0022618.1 mouse_genomes_project 16 17210184 17219439 + MGP_AJ_P0043775 Chrd protein_coding nonsense_mediated_decay MGP_AJ_T0043776.1 MGP_AJ_G0022618.1 mouse_genomes_project 16 17213263 17219437 + Chrd protein_coding retained_intron MGP_AJ_T0044439.1 MGP_AJ_G0022793.1 mouse_genomes_project 16 40440677 40456941 - MGP_AJ_P0044439 Tigit protein_coding protein_coding MGP_AJ_T0099622.1 MGP_AJ_G0037588.1 mouse_genomes_project 16 45717070 45717174 - Gm22576 snRNA snRNA MGP_AJ_T0043987.1 MGP_AJ_G0022681.1 mouse_genomes_project 16 27849715 27877064 - MGP_AJ_P0043987 Ppp1r2 protein_coding protein_coding MGP_AJ_T0043988.1 MGP_AJ_G0022681.1 mouse_genomes_project 16 27858701 27876779 - MGP_AJ_P0043988 Ppp1r2 protein_coding protein_coding MGP_AJ_T0043989.1 MGP_AJ_G0022681.1 mouse_genomes_project 16 27859279 27875939 - MGP_AJ_P0043989 Ppp1r2 protein_coding unknown_likely_coding MGP_AJ_T0003676.1 MGP_AJ_G0003321.1 mouse_genomes_project 16 33561345 33577992 - 4930565N06Rik antisense antisense MGP_AJ_T0045178.1 MGP_AJ_G0023025.1 mouse_genomes_project 16 89098061 89171117 - MGP_AJ_P0045178 Rcan1 protein_coding protein_coding MGP_AJ_T0045179.1 MGP_AJ_G0023025.1 mouse_genomes_project 16 89098061 89106182 - MGP_AJ_P0045179 Rcan1 protein_coding protein_coding MGP_AJ_T0010149.1 MGP_AJ_G0008271.1 mouse_genomes_project 16 57483603 57483716 - Gm27784 miRNA miRNA MGP_AJ_T0045376.1 MGP_AJ_G0023063.1 mouse_genomes_project 16 94621500 94689412 - MGP_AJ_P0045376 C2cd2 protein_coding protein_coding MGP_AJ_T0044469.1 MGP_AJ_G0022800.1 mouse_genomes_project 16 40940086 40962948 + MGP_AJ_P0044469 Naa50 protein_coding protein_coding MGP_AJ_T0044470.1 MGP_AJ_G0022800.1 mouse_genomes_project 16 40940109 40963840 + MGP_AJ_P0044470 Naa50 protein_coding protein_coding MGP_AJ_T0044471.1 MGP_AJ_G0022800.1 mouse_genomes_project 16 40940142 40962946 + MGP_AJ_P0044471 Naa50 protein_coding protein_coding MGP_AJ_T0044472.1 MGP_AJ_G0022800.1 mouse_genomes_project 16 40940148 40961648 + MGP_AJ_P0044472 Naa50 protein_coding protein_coding MGP_AJ_T0043587.1 MGP_AJ_G0022574.1 mouse_genomes_project 16 14947960 14950718 + MGP_AJ_P0043587 Gm16314 protein_coding protein_coding MGP_AJ_T0013143.1 MGP_AJ_G0011238.1 mouse_genomes_project 16 16135541 16136135 - processed_pseudogene processed_pseudogene MGP_AJ_T0000956.1 MGP_AJ_G0000889.1 mouse_genomes_project 16 40097298 40097645 - TEC TEC MGP_AJ_T0043900.1 MGP_AJ_G0022655.1 mouse_genomes_project 16 22944045 22959215 - MGP_AJ_P0043900 Cldn1 protein_coding protein_coding MGP_AJ_T0045023.1 MGP_AJ_G0022995.1 mouse_genomes_project 16 87405739 87413832 - Mis18a protein_coding retained_intron MGP_AJ_T0045024.1 MGP_AJ_G0022995.1 mouse_genomes_project 16 87405739 87413832 - MGP_AJ_P0045024 Mis18a protein_coding protein_coding MGP_AJ_T0045025.1 MGP_AJ_G0022995.1 mouse_genomes_project 16 87407874 87413567 - Mis18a protein_coding retained_intron MGP_AJ_T0044965.1 MGP_AJ_G0022956.1 mouse_genomes_project 16 85331654 85332300 - MGP_AJ_P0044965 Krtap27-1 protein_coding protein_coding MGP_AJ_T0045087.1 MGP_AJ_G0023010.1 mouse_genomes_project 16 88240820 88258802 + MGP_AJ_P0045087 Ifngr2 protein_coding protein_coding MGP_AJ_T0045088.1 MGP_AJ_G0023010.1 mouse_genomes_project 16 88240895 88254280 + MGP_AJ_P0045088 Ifngr2 protein_coding nonsense_mediated_decay MGP_AJ_T0045089.1 MGP_AJ_G0023010.1 mouse_genomes_project 16 88254955 88258802 + Ifngr2 protein_coding processed_transcript MGP_AJ_T0013197.1 MGP_AJ_G0011292.1 mouse_genomes_project 16 76589473 76589903 - processed_pseudogene processed_pseudogene MGP_AJ_T0042846.1 MGP_AJ_G0022409.1 mouse_genomes_project 16 33784 44484 - MGP_AJ_P0042846 Mefv protein_coding protein_coding MGP_AJ_T0042847.1 MGP_AJ_G0022409.1 mouse_genomes_project 16 33784 44484 - MGP_AJ_P0042847 Mefv protein_coding protein_coding MGP_AJ_T0042937.1 MGP_AJ_G0022429.1 mouse_genomes_project 16 952802 1006085 - MGP_AJ_P0042937 Coro7 protein_coding protein_coding MGP_AJ_T0042938.1 MGP_AJ_G0022429.1 mouse_genomes_project 16 954046 955541 - Coro7 protein_coding processed_transcript MGP_AJ_T0042939.1 MGP_AJ_G0022429.1 mouse_genomes_project 16 955421 956336 - Coro7 protein_coding retained_intron MGP_AJ_T0042940.1 MGP_AJ_G0022429.1 mouse_genomes_project 16 955728 1005986 - MGP_AJ_P0042940 Coro7 protein_coding nonsense_mediated_decay MGP_AJ_T0042941.1 MGP_AJ_G0022429.1 mouse_genomes_project 16 958549 960531 - Coro7 protein_coding retained_intron MGP_AJ_T0042942.1 MGP_AJ_G0022429.1 mouse_genomes_project 16 958917 961707 - Coro7 protein_coding retained_intron MGP_AJ_T0042943.1 MGP_AJ_G0022429.1 mouse_genomes_project 16 959948 973325 - Coro7 protein_coding processed_transcript MGP_AJ_T0042944.1 MGP_AJ_G0022429.1 mouse_genomes_project 16 959995 961713 - Coro7 protein_coding retained_intron MGP_AJ_T0042945.1 MGP_AJ_G0022429.1 mouse_genomes_project 16 961269 988404 - Coro7 protein_coding retained_intron MGP_AJ_T0042949.1 MGP_AJ_G0022429.1 mouse_genomes_project 16 979153 1006085 - MGP_AJ_P0042949 Coro7 protein_coding protein_coding MGP_AJ_T0042950.1 MGP_AJ_G0022429.1 mouse_genomes_project 16 986783 1006021 - Coro7 protein_coding retained_intron MGP_AJ_T0042951.1 MGP_AJ_G0022429.1 mouse_genomes_project 16 1001818 1006050 - Coro7 protein_coding retained_intron MGP_AJ_T0044068.1 MGP_AJ_G0022703.1 mouse_genomes_project 16 29050729 29060005 + Tctex1d2 protein_coding retained_intron MGP_AJ_T0044069.1 MGP_AJ_G0022703.1 mouse_genomes_project 16 29050743 29060007 + MGP_AJ_P0044069 Tctex1d2 protein_coding protein_coding MGP_AJ_T0043651.1 MGP_AJ_G0022600.1 mouse_genomes_project 16 16705253 16713302 - MGP_AJ_P0043651 Map6d1 protein_coding protein_coding MGP_AJ_T0044024.1 MGP_AJ_G0022690.1 mouse_genomes_project 16 28578291 28587975 + MGP_AJ_P0044024 Ncbp2 protein_coding protein_coding MGP_AJ_T0044025.1 MGP_AJ_G0022690.1 mouse_genomes_project 16 28578379 28586651 + Ncbp2 protein_coding retained_intron MGP_AJ_T0044026.1 MGP_AJ_G0022690.1 mouse_genomes_project 16 28578384 28591284 + Ncbp2 protein_coding processed_transcript MGP_AJ_T0044027.1 MGP_AJ_G0022690.1 mouse_genomes_project 16 28578391 28586679 + MGP_AJ_P0044027 Ncbp2 protein_coding protein_coding MGP_AJ_T0043493.1 MGP_AJ_G0022556.1 mouse_genomes_project 16 14329908 14333608 + MGP_AJ_P0043493 Tssk1 protein_coding protein_coding MGP_AJ_T0044894.1 MGP_AJ_G0022935.1 mouse_genomes_project 16 81408371 81426205 - MGP_AJ_P0044894 Mrpl39 protein_coding protein_coding MGP_AJ_T0044895.1 MGP_AJ_G0022935.1 mouse_genomes_project 16 81424630 81425693 - Mrpl39 protein_coding processed_transcript MGP_AJ_T0045001.1 MGP_AJ_G0022988.1 mouse_genomes_project 16 86157173 86157752 - MGP_AJ_P0045001 Krtap8-1 protein_coding protein_coding MGP_AJ_T0003652.1 MGP_AJ_G0003302.1 mouse_genomes_project 16 10129938 10139133 + Pla2g10os antisense antisense MGP_AJ_T0100895.1 MGP_AJ_G0038861.1 mouse_genomes_project 16 65195728 65195835 - Gm24681 snoRNA snoRNA MGP_AJ_T0044261.1 MGP_AJ_G0022753.1 mouse_genomes_project 16 33131665 33136499 - MGP_AJ_P0044261 Stfa3 protein_coding protein_coding MGP_AJ_T0043093.1 MGP_AJ_G0022470.1 mouse_genomes_project 16 6880878 6934146 + MGP_AJ_P0043093 Ciita protein_coding unknown_likely_coding MGP_AJ_T0043094.1 MGP_AJ_G0022470.1 mouse_genomes_project 16 6891203 6933764 + MGP_AJ_P0043094 Ciita protein_coding protein_coding MGP_AJ_T0044977.1 MGP_AJ_G0022966.1 mouse_genomes_project 16 85532790 85533458 - MGP_AJ_P0044977 Krtap19-2 protein_coding protein_coding MGP_AJ_T0043066.1 MGP_AJ_G0022463.1 mouse_genomes_project 16 5962514 6391361 - MGP_AJ_P0043066 Grin2a protein_coding protein_coding MGP_AJ_T0043067.1 MGP_AJ_G0022463.1 mouse_genomes_project 16 5973686 6391020 - MGP_AJ_P0043067 Grin2a protein_coding protein_coding MGP_AJ_T0043068.1 MGP_AJ_G0022463.1 mouse_genomes_project 16 5973772 6388991 - MGP_AJ_P0043068 Grin2a protein_coding protein_coding MGP_AJ_T0043069.1 MGP_AJ_G0022463.1 mouse_genomes_project 16 6159444 6195651 - Grin2a protein_coding processed_transcript MGP_AJ_T0043070.1 MGP_AJ_G0022463.1 mouse_genomes_project 16 6388112 6391998 - Grin2a protein_coding retained_intron MGP_AJ_T0043071.1 MGP_AJ_G0022463.1 mouse_genomes_project 16 6388112 6390708 - Grin2a protein_coding retained_intron MGP_AJ_T0017524.1 MGP_AJ_G0015303.1 mouse_genomes_project 16 88156515 88161531 + A930006K02Rik processed_transcript processed_transcript MGP_AJ_T0003695.1 MGP_AJ_G0003335.1 mouse_genomes_project 16 89012527 89016280 - 1700048M11Rik antisense antisense MGP_AJ_T0044972.1 MGP_AJ_G0022963.1 mouse_genomes_project 16 85476952 85484108 - MGP_AJ_P0044972 Krtap14 protein_coding protein_coding MGP_AJ_T0044974.1 MGP_AJ_G0022963.1 mouse_genomes_project 16 85483575 85484431 - MGP_AJ_P0044974 Krtap14 protein_coding protein_coding MGP_AJ_T0043826.1 MGP_AJ_G0022633.1 mouse_genomes_project 16 19352756 19397297 - MGP_AJ_P0043826 Tbccd1 protein_coding protein_coding MGP_AJ_T0013120.1 MGP_AJ_G0011215.1 mouse_genomes_project 16 4977893 4978428 - processed_pseudogene processed_pseudogene MGP_AJ_T0043548.1 MGP_AJ_G0022570.1 mouse_genomes_project 16 14794688 14855936 + MGP_AJ_P0043548 Arvcf protein_coding protein_coding MGP_AJ_T0043549.1 MGP_AJ_G0022570.1 mouse_genomes_project 16 14794780 14855932 + MGP_AJ_P0043549 Arvcf protein_coding protein_coding MGP_AJ_T0043550.1 MGP_AJ_G0022570.1 mouse_genomes_project 16 14794780 14855936 + MGP_AJ_P0043550 Arvcf protein_coding protein_coding MGP_AJ_T0043551.1 MGP_AJ_G0022570.1 mouse_genomes_project 16 14828789 14855607 + MGP_AJ_P0043551 Arvcf protein_coding protein_coding MGP_AJ_T0043552.1 MGP_AJ_G0022570.1 mouse_genomes_project 16 14840568 14855936 + MGP_AJ_P0043552 Arvcf protein_coding nonsense_mediated_decay MGP_AJ_T0043553.1 MGP_AJ_G0022570.1 mouse_genomes_project 16 14840569 14855116 + MGP_AJ_P0043553 Arvcf protein_coding protein_coding MGP_AJ_T0043554.1 MGP_AJ_G0022570.1 mouse_genomes_project 16 14845700 14847866 + Arvcf protein_coding processed_transcript MGP_AJ_T0043555.1 MGP_AJ_G0022570.1 mouse_genomes_project 16 14847949 14849500 + Arvcf protein_coding retained_intron MGP_AJ_T0043556.1 MGP_AJ_G0022570.1 mouse_genomes_project 16 14849991 14852291 + Arvcf protein_coding processed_transcript MGP_AJ_T0043557.1 MGP_AJ_G0022570.1 mouse_genomes_project 16 14852308 14853318 + Arvcf protein_coding retained_intron MGP_AJ_T0003698.1 MGP_AJ_G0003338.1 mouse_genomes_project 16 92833679 92851217 + Gm15341 antisense antisense MGP_AJ_T0013199.1 MGP_AJ_G0011294.1 mouse_genomes_project 16 84200213 84200603 - processed_pseudogene processed_pseudogene MGP_AJ_T0044221.1 MGP_AJ_G0022736.1 mouse_genomes_project 16 32450936 32511642 + MGP_AJ_P0044221 Hspbap1 protein_coding protein_coding MGP_AJ_T0006877.1 MGP_AJ_G0005663.1 mouse_genomes_project 16 81393829 81405911 + Mir155hg lincRNA lincRNA MGP_AJ_T0006878.1 MGP_AJ_G0005663.1 mouse_genomes_project 16 81403688 81405911 + Mir155hg lincRNA lincRNA MGP_AJ_T0010106.1 MGP_AJ_G0008228.1 mouse_genomes_project 16 1559811 1559897 - Mir6364 miRNA miRNA MGP_AJ_T0044530.1 MGP_AJ_G0022813.1 mouse_genomes_project 16 41937043 41956393 - MGP_AJ_P0044530 Slc35a5 protein_coding protein_coding MGP_AJ_T0044531.1 MGP_AJ_G0022813.1 mouse_genomes_project 16 41939417 41956253 - MGP_AJ_P0044531 Slc35a5 protein_coding protein_coding MGP_AJ_T0044532.1 MGP_AJ_G0022813.1 mouse_genomes_project 16 41941485 41949393 - Slc35a5 protein_coding retained_intron MGP_AJ_T0044533.1 MGP_AJ_G0022813.1 mouse_genomes_project 16 41941628 41956331 - MGP_AJ_P0044533 Slc35a5 protein_coding protein_coding MGP_AJ_T0044534.1 MGP_AJ_G0022813.1 mouse_genomes_project 16 41941648 41955870 - MGP_AJ_P0044534 Slc35a5 protein_coding protein_coding MGP_AJ_T0044535.1 MGP_AJ_G0022813.1 mouse_genomes_project 16 41950033 41956342 - Slc35a5 protein_coding retained_intron MGP_AJ_T0044536.1 MGP_AJ_G0022813.1 mouse_genomes_project 16 41950076 41956140 - MGP_AJ_P0044536 Slc35a5 protein_coding protein_coding MGP_AJ_T0044537.1 MGP_AJ_G0022813.1 mouse_genomes_project 16 41952162 41956287 - Slc35a5 protein_coding retained_intron MGP_AJ_T0006855.1 MGP_AJ_G0005648.1 mouse_genomes_project 16 40136475 40154373 - Gm9968 lincRNA lincRNA MGP_AJ_T0099629.1 MGP_AJ_G0037595.1 mouse_genomes_project 16 62977854 62977961 + Gm22448 snRNA snRNA MGP_AJ_T0042887.1 MGP_AJ_G0022419.1 mouse_genomes_project 16 304582 314580 - MGP_AJ_P0042887 Slx4 protein_coding nonsense_mediated_decay MGP_AJ_T0042888.1 MGP_AJ_G0022419.1 mouse_genomes_project 16 304600 327692 - MGP_AJ_P0042888 Slx4 protein_coding protein_coding MGP_AJ_T0042889.1 MGP_AJ_G0022419.1 mouse_genomes_project 16 304601 321096 - MGP_AJ_P0042889 Slx4 protein_coding nonsense_mediated_decay MGP_AJ_T0042890.1 MGP_AJ_G0022419.1 mouse_genomes_project 16 304605 310995 - Slx4 protein_coding retained_intron MGP_AJ_T0042891.1 MGP_AJ_G0022419.1 mouse_genomes_project 16 304610 307682 - Slx4 protein_coding retained_intron MGP_AJ_T0042892.1 MGP_AJ_G0022419.1 mouse_genomes_project 16 320145 327264 - MGP_AJ_P0042892 Slx4 protein_coding protein_coding MGP_AJ_T0042893.1 MGP_AJ_G0022419.1 mouse_genomes_project 16 327014 329782 - MGP_AJ_P0042893 Slx4 protein_coding protein_coding MGP_AJ_T0042894.1 MGP_AJ_G0022419.1 mouse_genomes_project 16 327212 329764 - MGP_AJ_P0042894 Slx4 protein_coding protein_coding MGP_AJ_T0043590.1 MGP_AJ_G0022575.1 mouse_genomes_project 16 15033444 15038701 - MGP_AJ_P0043590 Tbx1 protein_coding protein_coding MGP_AJ_T0043195.1 MGP_AJ_G0022496.1 mouse_genomes_project 16 10114826 10130546 - MGP_AJ_P0043195 Pla2g10 protein_coding protein_coding MGP_AJ_T0043196.1 MGP_AJ_G0022496.1 mouse_genomes_project 16 10114828 10131086 - MGP_AJ_P0043196 Pla2g10 protein_coding protein_coding MGP_AJ_T0043197.1 MGP_AJ_G0022496.1 mouse_genomes_project 16 10115163 10130822 - Pla2g10 protein_coding processed_transcript MGP_AJ_T0043198.1 MGP_AJ_G0022496.1 mouse_genomes_project 16 10125253 10130782 - Pla2g10 protein_coding processed_transcript MGP_AJ_T0043327.1 MGP_AJ_G0022527.1 mouse_genomes_project 16 13391791 13455741 + MGP_AJ_P0043327 Mapk1 protein_coding protein_coding MGP_AJ_T0043328.1 MGP_AJ_G0022527.1 mouse_genomes_project 16 13391791 13453037 + MGP_AJ_P0043328 Mapk1 protein_coding protein_coding MGP_AJ_T0043329.1 MGP_AJ_G0022527.1 mouse_genomes_project 16 13391976 13447180 + MGP_AJ_P0043329 Mapk1 protein_coding protein_coding MGP_AJ_T0043330.1 MGP_AJ_G0022527.1 mouse_genomes_project 16 13426541 13432184 + Mapk1 protein_coding retained_intron MGP_AJ_T0043331.1 MGP_AJ_G0022527.1 mouse_genomes_project 16 13434154 13435323 + Mapk1 protein_coding retained_intron MGP_AJ_T0043332.1 MGP_AJ_G0022527.1 mouse_genomes_project 16 13434494 13452151 + MGP_AJ_P0043332 Mapk1 protein_coding protein_coding MGP_AJ_T0043333.1 MGP_AJ_G0022527.1 mouse_genomes_project 16 13443477 13446845 + Mapk1 protein_coding processed_transcript MGP_AJ_T0043334.1 MGP_AJ_G0022527.1 mouse_genomes_project 16 13443688 13452498 + Mapk1 protein_coding processed_transcript MGP_AJ_T0044233.1 MGP_AJ_G0022740.1 mouse_genomes_project 16 32670221 32695418 + Kpna1 protein_coding retained_intron MGP_AJ_T0044234.1 MGP_AJ_G0022740.1 mouse_genomes_project 16 32674781 32729950 + MGP_AJ_P0044234 Kpna1 protein_coding protein_coding MGP_AJ_T0044235.1 MGP_AJ_G0022740.1 mouse_genomes_project 16 32674791 32697198 + Kpna1 protein_coding retained_intron MGP_AJ_T0044236.1 MGP_AJ_G0022740.1 mouse_genomes_project 16 32674820 32712264 + MGP_AJ_P0044236 Kpna1 protein_coding nonsense_mediated_decay MGP_AJ_T0044237.1 MGP_AJ_G0022740.1 mouse_genomes_project 16 32675048 32705897 + MGP_AJ_P0044237 Kpna1 protein_coding protein_coding MGP_AJ_T0044238.1 MGP_AJ_G0022740.1 mouse_genomes_project 16 32691617 32726727 + MGP_AJ_P0044238 Kpna1 protein_coding nonsense_mediated_decay MGP_AJ_T0044239.1 MGP_AJ_G0022740.1 mouse_genomes_project 16 32691683 32714641 + MGP_AJ_P0044239 Kpna1 protein_coding nonsense_mediated_decay MGP_AJ_T0044240.1 MGP_AJ_G0022740.1 mouse_genomes_project 16 32706780 32727950 + MGP_AJ_P0044240 Kpna1 protein_coding nonsense_mediated_decay MGP_AJ_T0044241.1 MGP_AJ_G0022740.1 mouse_genomes_project 16 32712363 32726687 + MGP_AJ_P0044241 Kpna1 protein_coding protein_coding MGP_AJ_T0044242.1 MGP_AJ_G0022740.1 mouse_genomes_project 16 32714639 32724593 + Kpna1 protein_coding retained_intron MGP_AJ_T0044201.1 MGP_AJ_G0022729.1 mouse_genomes_project 16 31421857 31556180 + Mylk protein_coding retained_intron MGP_AJ_T0044202.1 MGP_AJ_G0022729.1 mouse_genomes_project 16 31461446 31677349 + MGP_AJ_P0044202 Mylk protein_coding protein_coding MGP_AJ_T0045175.1 MGP_AJ_G0023023.1 mouse_genomes_project 16 89022544 89025223 - MGP_AJ_P0045175 4930563D23Rik protein_coding protein_coding MGP_AJ_T0098413.1 MGP_AJ_G0036397.1 mouse_genomes_project 16 55950309 55951239 - pseudogene pseudogene MGP_AJ_T0044878.1 MGP_AJ_G0022926.1 mouse_genomes_project 16 74286355 74300422 - MGP_AJ_P0044878 Gm11146 protein_coding protein_coding MGP_AJ_T0045223.1 MGP_AJ_G0023037.1 mouse_genomes_project 16 91063931 91072106 + MGP_AJ_P0045223 Ripply3 protein_coding protein_coding MGP_AJ_T0043007.1 MGP_AJ_G0022445.1 mouse_genomes_project 16 1384970 1421868 + MGP_AJ_P0043007 Ubn1 protein_coding unknown_likely_coding MGP_AJ_T0044599.1 MGP_AJ_G0022831.1 mouse_genomes_project 16 45513693 45550526 - MGP_AJ_P0044599 Trat1 protein_coding protein_coding MGP_AJ_T0044155.1 MGP_AJ_G0022719.1 mouse_genomes_project 16 29935355 29982985 + MGP_AJ_P0044155 Snx4 protein_coding protein_coding MGP_AJ_T0044978.1 MGP_AJ_G0022967.1 mouse_genomes_project 16 85536713 85537239 - MGP_AJ_P0044978 Krtap19-3 protein_coding protein_coding MGP_AJ_T0044838.1 MGP_AJ_G0022916.1 mouse_genomes_project 16 66605194 66612785 - MGP_AJ_P0044838 Speer2 protein_coding protein_coding MGP_AJ_T0017523.1 MGP_AJ_G0015302.1 mouse_genomes_project 16 87734705 87746727 + 4931406G06Rik processed_transcript processed_transcript MGP_AJ_T0006886.1 MGP_AJ_G0005668.1 mouse_genomes_project 16 90115043 90150664 - 1700029J03Rik lincRNA lincRNA MGP_AJ_T0006887.1 MGP_AJ_G0005668.1 mouse_genomes_project 16 90120106 90183328 - 1700029J03Rik lincRNA lincRNA MGP_AJ_T0006853.1 MGP_AJ_G0005646.1 mouse_genomes_project 16 32488868 32491865 - Gm26838 lincRNA lincRNA MGP_AJ_T0044995.1 MGP_AJ_G0022982.1 mouse_genomes_project 16 85830961 85831358 + MGP_AJ_P0044995 Gm9789 protein_coding protein_coding MGP_AJ_T0099602.1 MGP_AJ_G0037568.1 mouse_genomes_project 16 20999067 20999130 - Gm24440 snRNA snRNA MGP_AJ_T0010136.1 MGP_AJ_G0008258.1 mouse_genomes_project 16 33470004 33470074 + Gm22617 miRNA miRNA MGP_AJ_T0011803.1 MGP_AJ_G0009921.1 mouse_genomes_project 16 94306281 94332617 + MGP_AJ_P0011803 polymorphic_pseudogene polymorphic_pseudogene MGP_AJ_T0011804.1 MGP_AJ_G0009921.1 mouse_genomes_project 16 94307051 94333178 + MGP_AJ_P0011804 polymorphic_pseudogene polymorphic_pseudogene MGP_AJ_T0011805.1 MGP_AJ_G0009921.1 mouse_genomes_project 16 94307053 94333177 + MGP_AJ_P0011805 polymorphic_pseudogene protein_coding MGP_AJ_T0011806.1 MGP_AJ_G0009921.1 mouse_genomes_project 16 94322690 94324274 + polymorphic_pseudogene processed_transcript MGP_AJ_T0011807.1 MGP_AJ_G0009921.1 mouse_genomes_project 16 94330689 94332796 + polymorphic_pseudogene retained_intron MGP_AJ_T0044970.1 MGP_AJ_G0022961.1 mouse_genomes_project 16 85435048 85436076 - MGP_AJ_P0044970 2310057N15Rik protein_coding protein_coding MGP_AJ_T0043998.1 MGP_AJ_G0022685.1 mouse_genomes_project 16 28046055 28082321 + MGP_AJ_P0043998 Bdh1 protein_coding protein_coding MGP_AJ_T0043999.1 MGP_AJ_G0022685.1 mouse_genomes_project 16 28052448 28083731 + MGP_AJ_P0043999 Bdh1 protein_coding protein_coding MGP_AJ_T0044000.1 MGP_AJ_G0022685.1 mouse_genomes_project 16 28052452 28062606 + Bdh1 protein_coding retained_intron MGP_AJ_T0044001.1 MGP_AJ_G0022685.1 mouse_genomes_project 16 28052999 28082048 + MGP_AJ_P0044001 Bdh1 protein_coding protein_coding MGP_AJ_T0044002.1 MGP_AJ_G0022685.1 mouse_genomes_project 16 28059787 28081576 + MGP_AJ_P0044002 Bdh1 protein_coding protein_coding MGP_AJ_T0044003.1 MGP_AJ_G0022685.1 mouse_genomes_project 16 28082945 28083731 + Bdh1 protein_coding processed_transcript MGP_AJ_T0044779.1 MGP_AJ_G0022891.1 mouse_genomes_project 16 56048464 56049391 - MGP_AJ_P0044779 protein_coding protein_coding MGP_AJ_T0044500.1 MGP_AJ_G0022806.1 mouse_genomes_project 16 41542435 41555446 + MGP_AJ_P0044500 Nepro protein_coding protein_coding MGP_AJ_T0044501.1 MGP_AJ_G0022806.1 mouse_genomes_project 16 41542491 41549498 + MGP_AJ_P0044501 Nepro protein_coding nonsense_mediated_decay MGP_AJ_T0044502.1 MGP_AJ_G0022806.1 mouse_genomes_project 16 41542491 41554735 + MGP_AJ_P0044502 Nepro protein_coding nonsense_mediated_decay MGP_AJ_T0044503.1 MGP_AJ_G0022806.1 mouse_genomes_project 16 41544301 41552291 + Nepro protein_coding retained_intron MGP_AJ_T0044504.1 MGP_AJ_G0022806.1 mouse_genomes_project 16 41545253 41552888 + MGP_AJ_P0044504 Nepro protein_coding nonsense_mediated_decay MGP_AJ_T0100877.1 MGP_AJ_G0038843.1 mouse_genomes_project 16 32402778 32402926 - Gm25967 snoRNA snoRNA MGP_AJ_T0044963.1 MGP_AJ_G0022954.1 mouse_genomes_project 16 85286660 85287541 - MGP_AJ_P0044963 2310079G19Rik protein_coding protein_coding MGP_AJ_T0044315.1 MGP_AJ_G0022763.1 mouse_genomes_project 16 33690733 33773640 + MGP_AJ_P0044315 Polq protein_coding nonsense_mediated_decay MGP_AJ_T0044316.1 MGP_AJ_G0022763.1 mouse_genomes_project 16 33690733 33774045 + MGP_AJ_P0044316 Polq protein_coding nonsense_mediated_decay MGP_AJ_T0044317.1 MGP_AJ_G0022763.1 mouse_genomes_project 16 33690733 33773640 + MGP_AJ_P0044317 Polq protein_coding protein_coding MGP_AJ_T0044318.1 MGP_AJ_G0022763.1 mouse_genomes_project 16 33690733 33774065 + MGP_AJ_P0044318 Polq protein_coding protein_coding MGP_AJ_T0044319.1 MGP_AJ_G0022763.1 mouse_genomes_project 16 33690762 33696532 + Polq protein_coding retained_intron MGP_AJ_T0044320.1 MGP_AJ_G0022763.1 mouse_genomes_project 16 33718661 33740535 + Polq protein_coding retained_intron MGP_AJ_T0044321.1 MGP_AJ_G0022763.1 mouse_genomes_project 16 33764577 33774065 + Polq protein_coding retained_intron MGP_AJ_T0100874.1 MGP_AJ_G0038840.1 mouse_genomes_project 16 28696343 28696476 + Gm26419 snoRNA snoRNA MGP_AJ_T0043049.1 MGP_AJ_G0022459.1 mouse_genomes_project 16 5013193 5028444 - MGP_AJ_P0043049 Carhsp1 protein_coding protein_coding MGP_AJ_T0043403.1 MGP_AJ_G0022542.1 mouse_genomes_project 16 13917750 13935610 + MGP_AJ_P0043403 Aifm3 protein_coding protein_coding MGP_AJ_T0043404.1 MGP_AJ_G0022542.1 mouse_genomes_project 16 13917802 13935610 + MGP_AJ_P0043404 Aifm3 protein_coding protein_coding MGP_AJ_T0043405.1 MGP_AJ_G0022542.1 mouse_genomes_project 16 13917986 13933531 + Aifm3 protein_coding retained_intron MGP_AJ_T0043406.1 MGP_AJ_G0022542.1 mouse_genomes_project 16 13927796 13935606 + Aifm3 protein_coding retained_intron MGP_AJ_T0043407.1 MGP_AJ_G0022542.1 mouse_genomes_project 16 13930366 13931827 + Aifm3 protein_coding retained_intron MGP_AJ_T0043408.1 MGP_AJ_G0022542.1 mouse_genomes_project 16 13931016 13934049 + Aifm3 protein_coding retained_intron MGP_AJ_T0044968.1 MGP_AJ_G0022959.1 mouse_genomes_project 16 85412729 85413611 - MGP_AJ_P0044968 Krtap13 protein_coding protein_coding MGP_AJ_T0099598.1 MGP_AJ_G0037564.1 mouse_genomes_project 16 18297542 18297648 + Gm24898 snRNA snRNA MGP_AJ_T0098416.1 MGP_AJ_G0036400.1 mouse_genomes_project 16 86089427 86089847 - pseudogene pseudogene MGP_AJ_T0099607.1 MGP_AJ_G0037573.1 mouse_genomes_project 16 32832040 32832143 - Gm23080 snRNA snRNA MGP_AJ_T0045265.1 MGP_AJ_G0023041.1 mouse_genomes_project 16 91309128 91433790 + MGP_AJ_P0045265 Dyrk1a protein_coding protein_coding MGP_AJ_T0045266.1 MGP_AJ_G0023041.1 mouse_genomes_project 16 91309597 91430927 + MGP_AJ_P0045266 Dyrk1a protein_coding protein_coding MGP_AJ_T0045267.1 MGP_AJ_G0023041.1 mouse_genomes_project 16 91309982 91404847 + MGP_AJ_P0045267 Dyrk1a protein_coding protein_coding MGP_AJ_T0045268.1 MGP_AJ_G0023041.1 mouse_genomes_project 16 91310025 91434240 + MGP_AJ_P0045268 Dyrk1a protein_coding protein_coding MGP_AJ_T0045269.1 MGP_AJ_G0023041.1 mouse_genomes_project 16 91310025 91407731 + MGP_AJ_P0045269 Dyrk1a protein_coding protein_coding MGP_AJ_T0045270.1 MGP_AJ_G0023041.1 mouse_genomes_project 16 91407795 91418247 + Dyrk1a protein_coding retained_intron MGP_AJ_T0100872.1 MGP_AJ_G0038838.1 mouse_genomes_project 16 27495031 27495166 + Gm25375 snoRNA snoRNA MGP_AJ_T0013202.1 MGP_AJ_G0011297.1 mouse_genomes_project 16 88233150 88234029 - processed_pseudogene processed_pseudogene MGP_AJ_T0044585.1 MGP_AJ_G0022827.1 mouse_genomes_project 16 43196152 43304526 - MGP_AJ_P0044585 Nectin3 protein_coding protein_coding MGP_AJ_T0044586.1 MGP_AJ_G0022827.1 mouse_genomes_project 16 43203304 43219141 - MGP_AJ_P0044586 Nectin3 protein_coding protein_coding MGP_AJ_T0044587.1 MGP_AJ_G0022827.1 mouse_genomes_project 16 43203351 43219197 - MGP_AJ_P0044587 Nectin3 protein_coding protein_coding MGP_AJ_T0044588.1 MGP_AJ_G0022827.1 mouse_genomes_project 16 43203435 43256560 - MGP_AJ_P0044588 Nectin3 protein_coding protein_coding MGP_AJ_T0044589.1 MGP_AJ_G0022827.1 mouse_genomes_project 16 43203889 43246051 - MGP_AJ_P0044589 Nectin3 protein_coding protein_coding MGP_AJ_T0044590.1 MGP_AJ_G0022827.1 mouse_genomes_project 16 43243974 43304417 - MGP_AJ_P0044590 Nectin3 protein_coding protein_coding MGP_AJ_T0044591.1 MGP_AJ_G0022827.1 mouse_genomes_project 16 43244386 43246629 - Nectin3 protein_coding retained_intron MGP_AJ_T0044592.1 MGP_AJ_G0022827.1 mouse_genomes_project 16 43255218 43304526 - MGP_AJ_P0044592 Nectin3 protein_coding protein_coding MGP_AJ_T0044593.1 MGP_AJ_G0022827.1 mouse_genomes_project 16 43263457 43304337 - MGP_AJ_P0044593 Nectin3 protein_coding protein_coding MGP_AJ_T0044594.1 MGP_AJ_G0022827.1 mouse_genomes_project 16 43267749 43306084 - Nectin3 protein_coding processed_transcript MGP_AJ_T0006870.1 MGP_AJ_G0005658.1 mouse_genomes_project 16 54013961 54014568 + Gm26800 lincRNA lincRNA MGP_AJ_T0044075.1 MGP_AJ_G0022706.1 mouse_genomes_project 16 29127850 29139008 + MGP_AJ_P0044075 Zdhhc19 protein_coding protein_coding MGP_AJ_T0044076.1 MGP_AJ_G0022706.1 mouse_genomes_project 16 29131220 29198537 + Zdhhc19 protein_coding processed_transcript MGP_AJ_T0042883.1 MGP_AJ_G0022418.1 mouse_genomes_project 16 271211 302023 - MGP_AJ_P0042883 Nlrc3 protein_coding protein_coding MGP_AJ_T0042884.1 MGP_AJ_G0022418.1 mouse_genomes_project 16 271814 302110 - MGP_AJ_P0042884 Nlrc3 protein_coding protein_coding MGP_AJ_T0042885.1 MGP_AJ_G0022418.1 mouse_genomes_project 16 274786 302110 - Nlrc3 protein_coding retained_intron MGP_AJ_T0042886.1 MGP_AJ_G0022418.1 mouse_genomes_project 16 274795 290179 - Nlrc3 protein_coding retained_intron MGP_AJ_T0100861.1 MGP_AJ_G0038827.1 mouse_genomes_project 16 9927993 9928117 - Gm25276 snoRNA snoRNA MGP_AJ_T0099597.1 MGP_AJ_G0037563.1 mouse_genomes_project 16 17222365 17222530 + Gm22741 snRNA snRNA MGP_AJ_T0044981.1 MGP_AJ_G0022970.1 mouse_genomes_project 16 85583505 85583673 - MGP_AJ_P0044981 Krtap19-9a protein_coding protein_coding MGP_AJ_T0017486.1 MGP_AJ_G0015288.1 mouse_genomes_project 16 14866540 14871827 + Gm15764 processed_transcript antisense MGP_AJ_T0017487.1 MGP_AJ_G0015288.1 mouse_genomes_project 16 14866743 14871196 + Gm15764 processed_transcript retained_intron MGP_AJ_T0099634.1 MGP_AJ_G0037600.1 mouse_genomes_project 16 85274505 85274589 - Gm23587 snRNA snRNA MGP_AJ_T0013145.1 MGP_AJ_G0011240.1 mouse_genomes_project 16 17022270 17022553 - processed_pseudogene processed_pseudogene MGP_AJ_T0043517.1 MGP_AJ_G0022563.1 mouse_genomes_project 16 14568728 14594258 + MGP_AJ_P0043517 Rtn4r protein_coding protein_coding MGP_AJ_T0044555.1 MGP_AJ_G0022818.1 mouse_genomes_project 16 42339942 42405711 + MGP_AJ_P0044555 Slc9c1 protein_coding protein_coding MGP_AJ_T0044556.1 MGP_AJ_G0022818.1 mouse_genomes_project 16 42344270 42405596 + MGP_AJ_P0044556 Slc9c1 protein_coding nonsense_mediated_decay MGP_AJ_T0044557.1 MGP_AJ_G0022818.1 mouse_genomes_project 16 42344270 42405596 + MGP_AJ_P0044557 Slc9c1 protein_coding nonsense_mediated_decay MGP_AJ_T0099591.1 MGP_AJ_G0037557.1 mouse_genomes_project 16 7580235 7580398 - Gm24145 snRNA snRNA MGP_AJ_T0045222.1 MGP_AJ_G0023036.1 mouse_genomes_project 16 90875101 91025699 - MGP_AJ_P0045222 Hlcs protein_coding protein_coding MGP_AJ_T0000046.1 MGP_AJ_G0000037.1 mouse_genomes_project 16 15653993 15654035 - MGP_AJ_P0000046 Iglj4 IG_J_gene IG_J_gene MGP_AJ_T0000131.1 MGP_AJ_G0000099.1 mouse_genomes_project 16 15727340 15727824 - MGP_AJ_P0000131 Iglv2 IG_V_gene IG_V_gene MGP_AJ_T0013115.1 MGP_AJ_G0011210.1 mouse_genomes_project 16 252744 253057 + processed_pseudogene processed_pseudogene MGP_AJ_T0044707.1 MGP_AJ_G0022861.1 mouse_genomes_project 16 53859024 53891524 + MGP_AJ_P0044707 Tomm70a protein_coding protein_coding MGP_AJ_T0006888.1 MGP_AJ_G0005669.1 mouse_genomes_project 16 90534893 90537632 - 2310043M15Rik lincRNA lincRNA MGP_AJ_T0006892.1 MGP_AJ_G0005672.1 mouse_genomes_project 16 92629867 92631198 + Gm15340 lincRNA lincRNA MGP_AJ_T0099592.1 MGP_AJ_G0037558.1 mouse_genomes_project 16 13414394 13414489 - Gm22558 snRNA snRNA MGP_AJ_T0102108.1 MGP_AJ_G0039871.1 mouse_genomes_project 16 16909366 16916737 + unitary_pseudogene unitary_pseudogene MGP_AJ_T0044352.1 MGP_AJ_G0022771.1 mouse_genomes_project 16 34547871 34568927 + MGP_AJ_P0044352 Lrrc58 protein_coding protein_coding MGP_AJ_T0045198.1 MGP_AJ_G0023030.1 mouse_genomes_project 16 90432922 90440682 + MGP_AJ_P0045198 Cbr3 protein_coding protein_coding MGP_AJ_T0017491.1 MGP_AJ_G0015292.1 mouse_genomes_project 16 23312030 23352841 - Gm20319 processed_transcript processed_transcript MGP_AJ_T0017492.1 MGP_AJ_G0015292.1 mouse_genomes_project 16 23312328 23352852 - Gm20319 processed_transcript processed_transcript MGP_AJ_T0017493.1 MGP_AJ_G0015292.1 mouse_genomes_project 16 23327317 23352852 - Gm20319 processed_transcript processed_transcript MGP_AJ_T0013177.1 MGP_AJ_G0011272.1 mouse_genomes_project 16 42245968 42248940 - processed_pseudogene processed_pseudogene MGP_AJ_T0013140.1 MGP_AJ_G0011235.1 mouse_genomes_project 16 15478683 15479331 - processed_pseudogene processed_pseudogene MGP_AJ_T0013133.1 MGP_AJ_G0011228.1 mouse_genomes_project 16 12273092 12273375 + processed_pseudogene processed_pseudogene MGP_AJ_T0045216.1 MGP_AJ_G0023034.1 mouse_genomes_project 16 90666792 90677414 - MGP_AJ_P0045216 Cldn14 protein_coding protein_coding MGP_AJ_T0045217.1 MGP_AJ_G0023034.1 mouse_genomes_project 16 90666792 90677164 - MGP_AJ_P0045217 Cldn14 protein_coding protein_coding MGP_AJ_T0045218.1 MGP_AJ_G0023034.1 mouse_genomes_project 16 90666793 90753553 - MGP_AJ_P0045218 Cldn14 protein_coding protein_coding MGP_AJ_T0045219.1 MGP_AJ_G0023034.1 mouse_genomes_project 16 90667510 90677164 - Cldn14 protein_coding processed_transcript MGP_AJ_T0045220.1 MGP_AJ_G0023034.1 mouse_genomes_project 16 90667568 90677414 - Cldn14 protein_coding processed_transcript MGP_AJ_T0043630.1 MGP_AJ_G0022590.1 mouse_genomes_project 16 16104340 16108383 - MGP_AJ_P0043630 protein_coding protein_coding MGP_AJ_T0013201.1 MGP_AJ_G0011296.1 mouse_genomes_project 16 88206138 88207638 - processed_pseudogene processed_pseudogene MGP_AJ_T0043950.1 MGP_AJ_G0022670.1 mouse_genomes_project 16 26547388 26551199 - MGP_AJ_P0043950 Gm1968 protein_coding protein_coding MGP_AJ_T0003665.1 MGP_AJ_G0003314.1 mouse_genomes_project 16 29445139 29448862 + Gm26769 antisense antisense MGP_AJ_T0043300.1 MGP_AJ_G0022522.1 mouse_genomes_project 16 13269251 13272561 - MGP_AJ_P0043300 Igll1 protein_coding protein_coding MGP_AJ_T0043301.1 MGP_AJ_G0022522.1 mouse_genomes_project 16 13269251 13272393 - MGP_AJ_P0043301 Igll1 protein_coding protein_coding MGP_AJ_T0043302.1 MGP_AJ_G0022522.1 mouse_genomes_project 16 13269254 13272561 - Igll1 protein_coding retained_intron MGP_AJ_T0044538.1 MGP_AJ_G0022814.1 mouse_genomes_project 16 41956471 41989494 + MGP_AJ_P0044538 Atg3 protein_coding protein_coding MGP_AJ_T0044539.1 MGP_AJ_G0022814.1 mouse_genomes_project 16 41966868 41988849 + Atg3 protein_coding retained_intron MGP_AJ_T0043591.1 MGP_AJ_G0022576.1 mouse_genomes_project 16 15071637 15073722 - MGP_AJ_P0043591 Gp1bb protein_coding protein_coding MGP_AJ_T0043592.1 MGP_AJ_G0022576.1 mouse_genomes_project 16 15072040 15072685 - MGP_AJ_P0043592 Gp1bb protein_coding protein_coding MGP_AJ_T0043065.1 MGP_AJ_G0022462.1 mouse_genomes_project 16 5195460 5225638 + MGP_AJ_P0043065 1810013L24Rik protein_coding protein_coding MGP_AJ_T0003686.1 MGP_AJ_G0003329.1 mouse_genomes_project 16 46499663 46541305 - Gm15518 antisense antisense MGP_AJ_T0013151.1 MGP_AJ_G0011246.1 mouse_genomes_project 16 19769098 19770125 - processed_pseudogene processed_pseudogene MGP_AJ_T0010129.1 MGP_AJ_G0008251.1 mouse_genomes_project 16 19678595 19678815 + miRNA miRNA MGP_AJ_T0044715.1 MGP_AJ_G0022866.1 mouse_genomes_project 16 54082082 54305176 + MGP_AJ_P0044715 Filip1l protein_coding protein_coding MGP_AJ_T0044716.1 MGP_AJ_G0022866.1 mouse_genomes_project 16 54082266 54247222 + MGP_AJ_P0044716 Filip1l protein_coding protein_coding MGP_AJ_T0044717.1 MGP_AJ_G0022866.1 mouse_genomes_project 16 54280889 54304854 + MGP_AJ_P0044717 Filip1l protein_coding protein_coding MGP_AJ_T0043303.1 MGP_AJ_G0022523.1 mouse_genomes_project 16 13278124 13280441 - MGP_AJ_P0043303 Vpreb1 protein_coding protein_coding MGP_AJ_T0101740.1 MGP_AJ_G0039674.1 mouse_genomes_project 16 46195063 46195434 + transcribed_processed_pseudogene processed_transcript MGP_AJ_T0101741.1 MGP_AJ_G0039674.1 mouse_genomes_project 16 46195188 46196197 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0006851.1 MGP_AJ_G0005644.1 mouse_genomes_project 16 30067497 30068370 - 1700007L15Rik lincRNA lincRNA MGP_AJ_T0044862.1 MGP_AJ_G0022922.1 mouse_genomes_project 16 72436246 72448078 - MGP_AJ_P0044862 Hspa13 protein_coding protein_coding MGP_AJ_T0044863.1 MGP_AJ_G0022922.1 mouse_genomes_project 16 72437697 72448048 - MGP_AJ_P0044863 Hspa13 protein_coding protein_coding MGP_AJ_T0044864.1 MGP_AJ_G0022922.1 mouse_genomes_project 16 72440254 72448039 - Hspa13 protein_coding retained_intron MGP_AJ_T0100901.1 MGP_AJ_G0038867.1 mouse_genomes_project 16 75127524 75127654 - Gm25038 snoRNA snoRNA MGP_AJ_T0043839.1 MGP_AJ_G0022639.1 mouse_genomes_project 16 19601816 19613329 + MGP_AJ_P0043839 protein_coding protein_coding MGP_AJ_T0043840.1 MGP_AJ_G0022639.1 mouse_genomes_project 16 19602295 19629414 + MGP_AJ_P0043840 protein_coding protein_coding MGP_AJ_T0043841.1 MGP_AJ_G0022639.1 mouse_genomes_project 16 19602395 19657886 + MGP_AJ_P0043841 protein_coding unknown_likely_coding MGP_AJ_T0043842.1 MGP_AJ_G0022639.1 mouse_genomes_project 16 19602540 19629414 + protein_coding processed_transcript MGP_AJ_T0042862.1 MGP_AJ_G0022414.1 mouse_genomes_project 16 194352 222354 + MGP_AJ_P0042862 Naa60 protein_coding protein_coding MGP_AJ_T0042864.1 MGP_AJ_G0022414.1 mouse_genomes_project 16 206483 218893 + MGP_AJ_P0042864 Naa60 protein_coding nonsense_mediated_decay MGP_AJ_T0042865.1 MGP_AJ_G0022414.1 mouse_genomes_project 16 206498 225292 + MGP_AJ_P0042865 Naa60 protein_coding nonsense_mediated_decay MGP_AJ_T0042866.1 MGP_AJ_G0022414.1 mouse_genomes_project 16 206501 218924 + MGP_AJ_P0042866 Naa60 protein_coding nonsense_mediated_decay MGP_AJ_T0042867.1 MGP_AJ_G0022414.1 mouse_genomes_project 16 206512 226316 + MGP_AJ_P0042867 Naa60 protein_coding protein_coding MGP_AJ_T0042868.1 MGP_AJ_G0022414.1 mouse_genomes_project 16 206528 221943 + Naa60 protein_coding retained_intron MGP_AJ_T0042869.1 MGP_AJ_G0022414.1 mouse_genomes_project 16 215922 223482 + MGP_AJ_P0042869 Naa60 protein_coding protein_coding MGP_AJ_T0042870.1 MGP_AJ_G0022414.1 mouse_genomes_project 16 215922 223357 + MGP_AJ_P0042870 Naa60 protein_coding protein_coding MGP_AJ_T0010127.1 MGP_AJ_G0008249.1 mouse_genomes_project 16 19069369 19069498 - Mir8095 miRNA miRNA MGP_AJ_T0100862.1 MGP_AJ_G0038828.1 mouse_genomes_project 16 14684564 14684690 - Gm25777 snoRNA snoRNA MGP_AJ_T0043951.1 MGP_AJ_G0022671.1 mouse_genomes_project 16 26654835 26656021 + Hes1 protein_coding processed_transcript MGP_AJ_T0043952.1 MGP_AJ_G0022671.1 mouse_genomes_project 16 26655791 26658248 + MGP_AJ_P0043952 Hes1 protein_coding protein_coding MGP_AJ_T0043953.1 MGP_AJ_G0022671.1 mouse_genomes_project 16 26656548 26657575 + Hes1 protein_coding retained_intron MGP_AJ_T0043954.1 MGP_AJ_G0022671.1 mouse_genomes_project 16 26656789 26657771 + Hes1 protein_coding processed_transcript MGP_AJ_T0013119.1 MGP_AJ_G0011214.1 mouse_genomes_project 16 866864 867252 + processed_pseudogene processed_pseudogene MGP_AJ_T0013159.1 MGP_AJ_G0011254.1 mouse_genomes_project 16 29221343 29221952 - processed_pseudogene processed_pseudogene MGP_AJ_T0010165.1 MGP_AJ_G0008287.1 mouse_genomes_project 16 90912681 90912791 - Gm23062 miRNA miRNA MGP_AJ_T0000043.1 MGP_AJ_G0000034.1 mouse_genomes_project 16 15530295 15530333 - MGP_AJ_P0000043 Iglj1 IG_J_gene IG_J_gene MGP_AJ_T0010110.1 MGP_AJ_G0008232.1 mouse_genomes_project 16 9847012 9847091 + Mir193b miRNA miRNA MGP_AJ_T0100899.1 MGP_AJ_G0038865.1 mouse_genomes_project 16 72807690 72807821 - Gm22268 snoRNA snoRNA MGP_AJ_T0003667.1 MGP_AJ_G0003316.1 mouse_genomes_project 16 30473599 30483342 - Gm15657 antisense antisense MGP_AJ_T0003668.1 MGP_AJ_G0003316.1 mouse_genomes_project 16 30481635 30483340 - Gm15657 antisense antisense MGP_AJ_T0003669.1 MGP_AJ_G0003316.1 mouse_genomes_project 16 30481966 30484118 - Gm15657 antisense antisense MGP_AJ_T0044067.1 MGP_AJ_G0022702.1 mouse_genomes_project 16 29027242 29039306 + MGP_AJ_P0044067 Tm4sf19 protein_coding protein_coding MGP_AJ_T0045320.1 MGP_AJ_G0023048.1 mouse_genomes_project 16 92858174 92865624 - MGP_AJ_P0045320 Hmgn1 protein_coding protein_coding MGP_AJ_T0045321.1 MGP_AJ_G0023048.1 mouse_genomes_project 16 92859229 92863234 - Hmgn1 protein_coding retained_intron MGP_AJ_T0045322.1 MGP_AJ_G0023048.1 mouse_genomes_project 16 92859303 92865499 - MGP_AJ_P0045322 Hmgn1 protein_coding protein_coding MGP_AJ_T0045323.1 MGP_AJ_G0023048.1 mouse_genomes_project 16 92864499 92865361 - Hmgn1 protein_coding retained_intron MGP_AJ_T0098408.1 MGP_AJ_G0036392.1 mouse_genomes_project 16 17674503 17676329 - pseudogene pseudogene MGP_AJ_T0044706.1 MGP_AJ_G0022860.1 mouse_genomes_project 16 53771350 53809336 - MGP_AJ_P0044706 Tmem45a2 protein_coding protein_coding MGP_AJ_T0100864.1 MGP_AJ_G0038830.1 mouse_genomes_project 16 15865809 15865941 + Gm25762 snoRNA snoRNA MGP_AJ_T0100883.1 MGP_AJ_G0038849.1 mouse_genomes_project 16 40684923 40685180 - Gm25989 snoRNA snoRNA MGP_AJ_T0010137.1 MGP_AJ_G0008259.1 mouse_genomes_project 16 37070961 37071063 - Gm27887 miRNA miRNA MGP_AJ_T0013172.1 MGP_AJ_G0011267.1 mouse_genomes_project 16 39743022 39743341 + processed_pseudogene processed_pseudogene MGP_AJ_T0006849.1 MGP_AJ_G0005642.1 mouse_genomes_project 16 26785387 26792317 + 1700025H01Rik lincRNA lincRNA MGP_AJ_T0043372.1 MGP_AJ_G0022535.1 mouse_genomes_project 16 13630808 13636595 + MGP_AJ_P0043372 Rimbp3 protein_coding protein_coding MGP_AJ_T0043325.1 MGP_AJ_G0022526.1 mouse_genomes_project 16 13306748 13337637 + MGP_AJ_P0043325 Ppm1f protein_coding protein_coding MGP_AJ_T0043326.1 MGP_AJ_G0022526.1 mouse_genomes_project 16 13306853 13325473 + Ppm1f protein_coding processed_transcript MGP_AJ_T0013131.1 MGP_AJ_G0011226.1 mouse_genomes_project 16 11615961 11616431 - processed_pseudogene processed_pseudogene MGP_AJ_T0013154.1 MGP_AJ_G0011249.1 mouse_genomes_project 16 23926625 23927459 - processed_pseudogene processed_pseudogene MGP_AJ_T0043843.1 MGP_AJ_G0022640.1 mouse_genomes_project 16 19675599 19677142 + Eif4a2 protein_coding retained_intron MGP_AJ_T0043844.1 MGP_AJ_G0022640.1 mouse_genomes_project 16 19675599 19680637 + MGP_AJ_P0043844 Eif4a2 protein_coding protein_coding MGP_AJ_T0043845.1 MGP_AJ_G0022640.1 mouse_genomes_project 16 19675600 19676935 + Eif4a2 protein_coding retained_intron MGP_AJ_T0043846.1 MGP_AJ_G0022640.1 mouse_genomes_project 16 19675600 19677046 + Eif4a2 protein_coding retained_intron MGP_AJ_T0043847.1 MGP_AJ_G0022640.1 mouse_genomes_project 16 19675600 19681710 + MGP_AJ_P0043847 Eif4a2 protein_coding protein_coding MGP_AJ_T0043848.1 MGP_AJ_G0022640.1 mouse_genomes_project 16 19675608 19679116 + Eif4a2 protein_coding retained_intron MGP_AJ_T0043849.1 MGP_AJ_G0022640.1 mouse_genomes_project 16 19675612 19678551 + Eif4a2 protein_coding retained_intron MGP_AJ_T0043850.1 MGP_AJ_G0022640.1 mouse_genomes_project 16 19675614 19678160 + Eif4a2 protein_coding retained_intron MGP_AJ_T0043851.1 MGP_AJ_G0022640.1 mouse_genomes_project 16 19675618 19677015 + Eif4a2 protein_coding retained_intron MGP_AJ_T0043852.1 MGP_AJ_G0022640.1 mouse_genomes_project 16 19675620 19678089 + Eif4a2 protein_coding retained_intron MGP_AJ_T0043853.1 MGP_AJ_G0022640.1 mouse_genomes_project 16 19675758 19678492 + Eif4a2 protein_coding processed_transcript MGP_AJ_T0043854.1 MGP_AJ_G0022640.1 mouse_genomes_project 16 19676423 19677312 + Eif4a2 protein_coding retained_intron MGP_AJ_T0043855.1 MGP_AJ_G0022640.1 mouse_genomes_project 16 19677072 19678408 + Eif4a2 protein_coding retained_intron MGP_AJ_T0043856.1 MGP_AJ_G0022640.1 mouse_genomes_project 16 19677817 19680589 + Eif4a2 protein_coding retained_intron MGP_AJ_T0043857.1 MGP_AJ_G0022640.1 mouse_genomes_project 16 19677886 19678639 + Eif4a2 protein_coding retained_intron MGP_AJ_T0043858.1 MGP_AJ_G0022640.1 mouse_genomes_project 16 19678074 19679695 + Eif4a2 protein_coding retained_intron MGP_AJ_T0043859.1 MGP_AJ_G0022640.1 mouse_genomes_project 16 19678513 19680009 + Eif4a2 protein_coding retained_intron MGP_AJ_T0043860.1 MGP_AJ_G0022640.1 mouse_genomes_project 16 19678540 19680402 + Eif4a2 protein_coding retained_intron MGP_AJ_T0045048.1 MGP_AJ_G0023000.1 mouse_genomes_project 16 87625561 87701257 - MGP_AJ_P0045048 Synj1 protein_coding protein_coding MGP_AJ_T0045049.1 MGP_AJ_G0023000.1 mouse_genomes_project 16 87625562 87701375 - MGP_AJ_P0045049 Synj1 protein_coding protein_coding MGP_AJ_T0045050.1 MGP_AJ_G0023000.1 mouse_genomes_project 16 87625576 87639722 - MGP_AJ_P0045050 Synj1 protein_coding protein_coding MGP_AJ_T0045051.1 MGP_AJ_G0023000.1 mouse_genomes_project 16 87628127 87635958 - Synj1 protein_coding processed_transcript MGP_AJ_T0045052.1 MGP_AJ_G0023000.1 mouse_genomes_project 16 87628273 87634174 - MGP_AJ_P0045052 Synj1 protein_coding protein_coding MGP_AJ_T0045053.1 MGP_AJ_G0023000.1 mouse_genomes_project 16 87633778 87639727 - MGP_AJ_P0045053 Synj1 protein_coding protein_coding MGP_AJ_T0045054.1 MGP_AJ_G0023000.1 mouse_genomes_project 16 87649802 87701128 - Synj1 protein_coding retained_intron MGP_AJ_T0045055.1 MGP_AJ_G0023000.1 mouse_genomes_project 16 87653524 87701127 - MGP_AJ_P0045055 Synj1 protein_coding protein_coding MGP_AJ_T0045056.1 MGP_AJ_G0023000.1 mouse_genomes_project 16 87699380 87701130 - Synj1 protein_coding retained_intron MGP_AJ_T0043262.1 MGP_AJ_G0022513.1 mouse_genomes_project 16 12034972 12092978 + Prkdc protein_coding retained_intron MGP_AJ_T0043263.1 MGP_AJ_G0022513.1 mouse_genomes_project 16 12034995 12243407 + MGP_AJ_P0043263 Prkdc protein_coding protein_coding MGP_AJ_T0043186.1 MGP_AJ_G0022493.1 mouse_genomes_project 16 9934529 10066555 - MGP_AJ_P0043186 Parn protein_coding protein_coding MGP_AJ_T0010150.1 MGP_AJ_G0008272.1 mouse_genomes_project 16 59573878 59573946 + Gm25986 miRNA miRNA MGP_AJ_T0044753.1 MGP_AJ_G0022877.1 mouse_genomes_project 16 55615817 55617575 - MGP_AJ_P0044753 Olfr177 protein_coding protein_coding MGP_AJ_T0044754.1 MGP_AJ_G0022877.1 mouse_genomes_project 16 55615817 55616747 - MGP_AJ_P0044754 Olfr177 protein_coding protein_coding MGP_AJ_T0044406.1 MGP_AJ_G0022788.1 mouse_genomes_project 16 35509638 35527194 - MGP_AJ_P0044406 4930435E12Rik protein_coding protein_coding MGP_AJ_T0044407.1 MGP_AJ_G0022788.1 mouse_genomes_project 16 35522741 35527176 - 4930435E12Rik protein_coding retained_intron MGP_AJ_T0100906.1 MGP_AJ_G0038872.1 mouse_genomes_project 16 84071403 84071539 - Gm25896 snoRNA snoRNA MGP_AJ_T0042923.1 MGP_AJ_G0022425.1 mouse_genomes_project 16 803679 850862 - MGP_AJ_P0042923 Srl protein_coding protein_coding MGP_AJ_T0042924.1 MGP_AJ_G0022425.1 mouse_genomes_project 16 803691 850862 - MGP_AJ_P0042924 Srl protein_coding protein_coding MGP_AJ_T0042925.1 MGP_AJ_G0022425.1 mouse_genomes_project 16 811038 869397 - Srl protein_coding processed_transcript MGP_AJ_T0042926.1 MGP_AJ_G0022425.1 mouse_genomes_project 16 817065 850850 - Srl protein_coding retained_intron MGP_AJ_T0043034.1 MGP_AJ_G0022455.1 mouse_genomes_project 16 4862017 4976277 + MGP_AJ_P0043034 Abat protein_coding protein_coding MGP_AJ_T0043035.1 MGP_AJ_G0022455.1 mouse_genomes_project 16 4862069 4957186 + MGP_AJ_P0043035 Abat protein_coding protein_coding MGP_AJ_T0043036.1 MGP_AJ_G0022455.1 mouse_genomes_project 16 4862071 4933548 + Abat protein_coding retained_intron MGP_AJ_T0043037.1 MGP_AJ_G0022455.1 mouse_genomes_project 16 4862073 4974342 + MGP_AJ_P0043037 Abat protein_coding protein_coding MGP_AJ_T0043038.1 MGP_AJ_G0022455.1 mouse_genomes_project 16 4925765 4959736 + MGP_AJ_P0043038 Abat protein_coding protein_coding MGP_AJ_T0043039.1 MGP_AJ_G0022455.1 mouse_genomes_project 16 4936757 4957186 + MGP_AJ_P0043039 Abat protein_coding protein_coding MGP_AJ_T0043040.1 MGP_AJ_G0022455.1 mouse_genomes_project 16 4967021 4973348 + Abat protein_coding processed_transcript MGP_AJ_T0045123.1 MGP_AJ_G0023017.1 mouse_genomes_project 16 88383375 88424026 - MGP_AJ_P0045123 Cryzl1 protein_coding protein_coding MGP_AJ_T0045124.1 MGP_AJ_G0023017.1 mouse_genomes_project 16 88383395 88423853 - MGP_AJ_P0045124 Cryzl1 protein_coding protein_coding MGP_AJ_T0045125.1 MGP_AJ_G0023017.1 mouse_genomes_project 16 88383579 88387035 - Cryzl1 protein_coding processed_transcript MGP_AJ_T0045126.1 MGP_AJ_G0023017.1 mouse_genomes_project 16 88383659 88423674 - MGP_AJ_P0045126 Cryzl1 protein_coding protein_coding MGP_AJ_T0045127.1 MGP_AJ_G0023017.1 mouse_genomes_project 16 88386203 88403010 - MGP_AJ_P0045127 Cryzl1 protein_coding protein_coding MGP_AJ_T0045128.1 MGP_AJ_G0023017.1 mouse_genomes_project 16 88386229 88412516 - MGP_AJ_P0045128 Cryzl1 protein_coding protein_coding MGP_AJ_T0045129.1 MGP_AJ_G0023017.1 mouse_genomes_project 16 88388854 88423752 - MGP_AJ_P0045129 Cryzl1 protein_coding protein_coding MGP_AJ_T0045130.1 MGP_AJ_G0023017.1 mouse_genomes_project 16 88389107 88393625 - Cryzl1 protein_coding retained_intron MGP_AJ_T0045131.1 MGP_AJ_G0023017.1 mouse_genomes_project 16 88401354 88423651 - Cryzl1 protein_coding retained_intron MGP_AJ_T0045132.1 MGP_AJ_G0023017.1 mouse_genomes_project 16 88408530 88423649 - Cryzl1 protein_coding retained_intron MGP_AJ_T0045133.1 MGP_AJ_G0023017.1 mouse_genomes_project 16 88409208 88423659 - Cryzl1 protein_coding processed_transcript MGP_AJ_T0006857.1 MGP_AJ_G0005650.1 mouse_genomes_project 16 41136173 41139328 + Gm26732 lincRNA lincRNA MGP_AJ_T0010159.1 MGP_AJ_G0008281.1 mouse_genomes_project 16 81404805 81404870 + Mir155 miRNA miRNA MGP_AJ_T0044859.1 MGP_AJ_G0022921.1 mouse_genomes_project 16 72295504 72304364 + MGP_AJ_P0044859 Rbm11 protein_coding protein_coding MGP_AJ_T0044860.1 MGP_AJ_G0022921.1 mouse_genomes_project 16 72295504 72305569 + MGP_AJ_P0044860 Rbm11 protein_coding protein_coding MGP_AJ_T0044861.1 MGP_AJ_G0022921.1 mouse_genomes_project 16 72295551 72305565 + MGP_AJ_P0044861 Rbm11 protein_coding protein_coding MGP_AJ_T0013170.1 MGP_AJ_G0011265.1 mouse_genomes_project 16 35511412 35511806 + processed_pseudogene processed_pseudogene MGP_AJ_T0042978.1 MGP_AJ_G0022436.1 mouse_genomes_project 16 1202736 1208299 - MGP_AJ_P0042978 Ubald1 protein_coding protein_coding MGP_AJ_T0042979.1 MGP_AJ_G0022436.1 mouse_genomes_project 16 1202746 1207795 - Ubald1 protein_coding retained_intron MGP_AJ_T0045208.1 MGP_AJ_G0023033.1 mouse_genomes_project 16 90630787 90652978 + MGP_AJ_P0045208 Chaf1b protein_coding protein_coding MGP_AJ_T0045209.1 MGP_AJ_G0023033.1 mouse_genomes_project 16 90630810 90652940 + MGP_AJ_P0045209 Chaf1b protein_coding protein_coding MGP_AJ_T0045210.1 MGP_AJ_G0023033.1 mouse_genomes_project 16 90630817 90641173 + Chaf1b protein_coding retained_intron MGP_AJ_T0045211.1 MGP_AJ_G0023033.1 mouse_genomes_project 16 90630902 90632358 + MGP_AJ_P0045211 Chaf1b protein_coding protein_coding MGP_AJ_T0045212.1 MGP_AJ_G0023033.1 mouse_genomes_project 16 90631088 90634039 + MGP_AJ_P0045212 Chaf1b protein_coding protein_coding MGP_AJ_T0045213.1 MGP_AJ_G0023033.1 mouse_genomes_project 16 90633596 90639674 + Chaf1b protein_coding processed_transcript MGP_AJ_T0045214.1 MGP_AJ_G0023033.1 mouse_genomes_project 16 90639625 90646987 + Chaf1b protein_coding retained_intron MGP_AJ_T0045215.1 MGP_AJ_G0023033.1 mouse_genomes_project 16 90651550 90652973 + Chaf1b protein_coding retained_intron MGP_AJ_T0013118.1 MGP_AJ_G0011213.1 mouse_genomes_project 16 653139 653464 - processed_pseudogene processed_pseudogene MGP_AJ_T0011410.1 MGP_AJ_G0009532.1 mouse_genomes_project 16 38074241 38074404 - Gm27587 misc_RNA misc_RNA MGP_AJ_T0010141.1 MGP_AJ_G0008263.1 mouse_genomes_project 16 40593130 40593241 + Gm25996 miRNA miRNA MGP_AJ_T0013129.1 MGP_AJ_G0011224.1 mouse_genomes_project 16 10444671 10446889 - processed_pseudogene processed_pseudogene MGP_AJ_T0043825.1 MGP_AJ_G0022632.1 mouse_genomes_project 16 19344743 19350956 - MGP_AJ_P0043825 Crygs protein_coding protein_coding MGP_AJ_T0044561.1 MGP_AJ_G0022821.1 mouse_genomes_project 16 42455541 42494103 - MGP_AJ_P0044561 Tmprss7 protein_coding protein_coding MGP_AJ_T0044562.1 MGP_AJ_G0022821.1 mouse_genomes_project 16 42455543 42485783 - Tmprss7 protein_coding processed_transcript MGP_AJ_T0044563.1 MGP_AJ_G0022821.1 mouse_genomes_project 16 42455567 42490077 - Tmprss7 protein_coding processed_transcript MGP_AJ_T0044564.1 MGP_AJ_G0022821.1 mouse_genomes_project 16 42483798 42486901 - Tmprss7 protein_coding processed_transcript MGP_AJ_T0044565.1 MGP_AJ_G0022821.1 mouse_genomes_project 16 42483912 42486906 - Tmprss7 protein_coding retained_intron MGP_AJ_T0044671.1 MGP_AJ_G0022853.1 mouse_genomes_project 16 52765088 52770299 - MGP_AJ_P0044671 Trmt10c protein_coding protein_coding MGP_AJ_T0013165.1 MGP_AJ_G0011260.1 mouse_genomes_project 16 33457770 33459868 + processed_pseudogene processed_pseudogene MGP_AJ_T0044879.1 MGP_AJ_G0022927.1 mouse_genomes_project 16 74546348 74558959 + MGP_AJ_P0044879 Gm17333 protein_coding protein_coding MGP_AJ_T0010125.1 MGP_AJ_G0008247.1 mouse_genomes_project 16 17078932 17079017 + Mir1224 miRNA miRNA MGP_AJ_T0043159.1 MGP_AJ_G0022486.1 mouse_genomes_project 16 7731561 7738815 + MGP_AJ_P0043159 Tnfrsf17 protein_coding protein_coding MGP_AJ_T0101742.1 MGP_AJ_G0039675.1 mouse_genomes_project 16 73508007 73530599 - transcribed_processed_pseudogene processed_transcript MGP_AJ_T0101743.1 MGP_AJ_G0039675.1 mouse_genomes_project 16 73509790 73510139 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0100898.1 MGP_AJ_G0038864.1 mouse_genomes_project 16 71310680 71310826 + Gm26307 snoRNA snoRNA MGP_AJ_T0042856.1 MGP_AJ_G0022412.1 mouse_genomes_project 16 169242 180836 + MGP_AJ_P0042856 Zfp174 protein_coding protein_coding MGP_AJ_T0045020.1 MGP_AJ_G0022993.1 mouse_genomes_project 16 86903420 86958802 - MGP_AJ_P0045020 Scaf4 protein_coding protein_coding MGP_AJ_T0045021.1 MGP_AJ_G0022993.1 mouse_genomes_project 16 86903619 86958919 - MGP_AJ_P0045021 Scaf4 protein_coding protein_coding MGP_AJ_T0099599.1 MGP_AJ_G0037565.1 mouse_genomes_project 16 18750447 18750555 + Gm25810 snRNA snRNA MGP_AJ_T0044108.1 MGP_AJ_G0022712.1 mouse_genomes_project 16 29459282 29509163 - MGP_AJ_P0044108 Rubcn protein_coding protein_coding MGP_AJ_T0044109.1 MGP_AJ_G0022712.1 mouse_genomes_project 16 29459286 29462525 - Rubcn protein_coding retained_intron MGP_AJ_T0044110.1 MGP_AJ_G0022712.1 mouse_genomes_project 16 29459286 29509136 - MGP_AJ_P0044110 Rubcn protein_coding protein_coding MGP_AJ_T0044111.1 MGP_AJ_G0022712.1 mouse_genomes_project 16 29459299 29508936 - MGP_AJ_P0044111 Rubcn protein_coding protein_coding MGP_AJ_T0044112.1 MGP_AJ_G0022712.1 mouse_genomes_project 16 29459307 29509148 - MGP_AJ_P0044112 Rubcn protein_coding protein_coding MGP_AJ_T0044113.1 MGP_AJ_G0022712.1 mouse_genomes_project 16 29461054 29476154 - Rubcn protein_coding retained_intron MGP_AJ_T0044114.1 MGP_AJ_G0022712.1 mouse_genomes_project 16 29465527 29467290 - Rubcn protein_coding retained_intron MGP_AJ_T0044115.1 MGP_AJ_G0022712.1 mouse_genomes_project 16 29473085 29474131 - Rubcn protein_coding retained_intron MGP_AJ_T0044116.1 MGP_AJ_G0022712.1 mouse_genomes_project 16 29502428 29509135 - Rubcn protein_coding processed_transcript MGP_AJ_T0010116.1 MGP_AJ_G0008238.1 mouse_genomes_project 16 13538288 13538370 - Mir130b miRNA miRNA MGP_AJ_T0043020.1 MGP_AJ_G0022451.1 mouse_genomes_project 16 1584068 1595649 - MGP_AJ_P0043020 Eef2kmt protein_coding protein_coding MGP_AJ_T0043021.1 MGP_AJ_G0022451.1 mouse_genomes_project 16 1584795 1595607 - Eef2kmt protein_coding retained_intron MGP_AJ_T0043022.1 MGP_AJ_G0022451.1 mouse_genomes_project 16 1587043 1595622 - MGP_AJ_P0043022 Eef2kmt protein_coding protein_coding MGP_AJ_T0043023.1 MGP_AJ_G0022451.1 mouse_genomes_project 16 1587055 1588539 - Eef2kmt protein_coding retained_intron MGP_AJ_T0043024.1 MGP_AJ_G0022451.1 mouse_genomes_project 16 1588743 1595595 - Eef2kmt protein_coding retained_intron MGP_AJ_T0006825.1 MGP_AJ_G0005621.1 mouse_genomes_project 16 184337 206321 + Gm26675 lincRNA lincRNA MGP_AJ_T0043367.1 MGP_AJ_G0022534.1 mouse_genomes_project 16 13566946 13619169 - MGP_AJ_P0043367 Ube2l3 protein_coding protein_coding MGP_AJ_T0043368.1 MGP_AJ_G0022534.1 mouse_genomes_project 16 13566948 13618012 - MGP_AJ_P0043368 Ube2l3 protein_coding protein_coding MGP_AJ_T0043369.1 MGP_AJ_G0022534.1 mouse_genomes_project 16 13567251 13576118 - Ube2l3 protein_coding processed_transcript MGP_AJ_T0043370.1 MGP_AJ_G0022534.1 mouse_genomes_project 16 13568243 13618014 - MGP_AJ_P0043370 Ube2l3 protein_coding protein_coding MGP_AJ_T0043371.1 MGP_AJ_G0022534.1 mouse_genomes_project 16 13573339 13617993 - Ube2l3 protein_coding retained_intron MGP_AJ_T0045022.1 MGP_AJ_G0022994.1 mouse_genomes_project 16 87059139 87174633 + MGP_AJ_P0045022 Hunk protein_coding protein_coding MGP_AJ_T0003679.1 MGP_AJ_G0003324.1 mouse_genomes_project 16 35527352 35527689 + antisense antisense MGP_AJ_T0011407.1 MGP_AJ_G0009529.1 mouse_genomes_project 16 20001041 20001355 - Gm23430 misc_RNA misc_RNA MGP_AJ_T0100880.1 MGP_AJ_G0038846.1 mouse_genomes_project 16 34898120 34898249 - Gm27931 snoRNA snoRNA MGP_AJ_T0044572.1 MGP_AJ_G0022824.1 mouse_genomes_project 16 42545937 42644478 - MGP_AJ_P0044572 Phldb2 protein_coding protein_coding MGP_AJ_T0044573.1 MGP_AJ_G0022824.1 mouse_genomes_project 16 42546088 42644334 - MGP_AJ_P0044573 Phldb2 protein_coding protein_coding MGP_AJ_T0044574.1 MGP_AJ_G0022824.1 mouse_genomes_project 16 42546851 42600347 - MGP_AJ_P0044574 Phldb2 protein_coding protein_coding MGP_AJ_T0044575.1 MGP_AJ_G0022824.1 mouse_genomes_project 16 42555989 42760877 - MGP_AJ_P0044575 Phldb2 protein_coding protein_coding MGP_AJ_T0044576.1 MGP_AJ_G0022824.1 mouse_genomes_project 16 42561484 42571039 - Phldb2 protein_coding processed_transcript MGP_AJ_T0044577.1 MGP_AJ_G0022824.1 mouse_genomes_project 16 42576468 42587958 - Phldb2 protein_coding processed_transcript MGP_AJ_T0044578.1 MGP_AJ_G0022824.1 mouse_genomes_project 16 42579081 42590023 - MGP_AJ_P0044578 Phldb2 protein_coding protein_coding MGP_AJ_T0044579.1 MGP_AJ_G0022824.1 mouse_genomes_project 16 42625250 42760772 - MGP_AJ_P0044579 Phldb2 protein_coding protein_coding MGP_AJ_T0044580.1 MGP_AJ_G0022824.1 mouse_genomes_project 16 42625419 42644443 - Phldb2 protein_coding processed_transcript MGP_AJ_T0044581.1 MGP_AJ_G0022824.1 mouse_genomes_project 16 42701343 42702270 - Phldb2 protein_coding processed_transcript MGP_AJ_T0044582.1 MGP_AJ_G0022824.1 mouse_genomes_project 16 42701534 42760812 - Phldb2 protein_coding processed_transcript MGP_AJ_T0044293.1 MGP_AJ_G0022759.1 mouse_genomes_project 16 33508382 33511563 + Iqcb1 protein_coding processed_transcript MGP_AJ_T0044294.1 MGP_AJ_G0022759.1 mouse_genomes_project 16 33508404 33553478 + MGP_AJ_P0044294 Iqcb1 protein_coding protein_coding MGP_AJ_T0044295.1 MGP_AJ_G0022759.1 mouse_genomes_project 16 33508405 33553470 + MGP_AJ_P0044295 Iqcb1 protein_coding protein_coding MGP_AJ_T0044296.1 MGP_AJ_G0022759.1 mouse_genomes_project 16 33527020 33531394 + Iqcb1 protein_coding retained_intron MGP_AJ_T0044297.1 MGP_AJ_G0022759.1 mouse_genomes_project 16 33527415 33531412 + Iqcb1 protein_coding processed_transcript MGP_AJ_T0044298.1 MGP_AJ_G0022759.1 mouse_genomes_project 16 33531273 33540344 + Iqcb1 protein_coding processed_transcript MGP_AJ_T0044299.1 MGP_AJ_G0022759.1 mouse_genomes_project 16 33531622 33537213 + Iqcb1 protein_coding processed_transcript MGP_AJ_T0003646.1 MGP_AJ_G0003297.1 mouse_genomes_project 16 1056180 1057121 + Gm15859 antisense antisense MGP_AJ_T0010126.1 MGP_AJ_G0008248.1 mouse_genomes_project 16 17781285 17781339 - Mir7680 miRNA miRNA MGP_AJ_T0010156.1 MGP_AJ_G0008278.1 mouse_genomes_project 16 74297493 74297587 + Mirlet7c-1 miRNA miRNA MGP_AJ_T0003648.1 MGP_AJ_G0003299.1 mouse_genomes_project 16 7076222 7090392 - Gm15558 antisense antisense MGP_AJ_T0044210.1 MGP_AJ_G0022733.1 mouse_genomes_project 16 32074831 32166091 - MGP_AJ_P0044210 Pdia5 protein_coding protein_coding MGP_AJ_T0043474.1 MGP_AJ_G0022551.1 mouse_genomes_project 16 14193836 14207232 + MGP_AJ_P0043474 Klhl22 protein_coding protein_coding MGP_AJ_T0043475.1 MGP_AJ_G0022551.1 mouse_genomes_project 16 14193839 14228678 + MGP_AJ_P0043475 Klhl22 protein_coding protein_coding MGP_AJ_T0043476.1 MGP_AJ_G0022551.1 mouse_genomes_project 16 14193856 14207274 + MGP_AJ_P0043476 Klhl22 protein_coding protein_coding MGP_AJ_T0043477.1 MGP_AJ_G0022551.1 mouse_genomes_project 16 14193881 14214545 + Klhl22 protein_coding retained_intron MGP_AJ_T0043478.1 MGP_AJ_G0022551.1 mouse_genomes_project 16 14193889 14228678 + MGP_AJ_P0043478 Klhl22 protein_coding protein_coding MGP_AJ_T0043479.1 MGP_AJ_G0022551.1 mouse_genomes_project 16 14194573 14207225 + MGP_AJ_P0043479 Klhl22 protein_coding protein_coding MGP_AJ_T0043480.1 MGP_AJ_G0022551.1 mouse_genomes_project 16 14197009 14228680 + MGP_AJ_P0043480 Klhl22 protein_coding protein_coding MGP_AJ_T0043481.1 MGP_AJ_G0022551.1 mouse_genomes_project 16 14198354 14207249 + Klhl22 protein_coding retained_intron MGP_AJ_T0000972.1 MGP_AJ_G0000904.1 mouse_genomes_project 16 74353625 74354533 + TEC TEC MGP_AJ_T0043095.1 MGP_AJ_G0022471.1 mouse_genomes_project 16 6905368 6950683 - MGP_AJ_P0043095 Dexi protein_coding protein_coding MGP_AJ_T0043096.1 MGP_AJ_G0022471.1 mouse_genomes_project 16 6936406 6938009 - Dexi protein_coding processed_transcript MGP_AJ_T0043097.1 MGP_AJ_G0022471.1 mouse_genomes_project 16 6936406 6950683 - MGP_AJ_P0043097 Dexi protein_coding protein_coding MGP_AJ_T0101738.1 MGP_AJ_G0039672.1 mouse_genomes_project 16 11841599 11842284 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0000958.1 MGP_AJ_G0000891.1 mouse_genomes_project 16 55035648 55037929 - TEC TEC MGP_AJ_T0043632.1 MGP_AJ_G0022592.1 mouse_genomes_project 16 16104343 16113161 - MGP_AJ_P0043632 protein_coding protein_coding MGP_AJ_T0045224.1 MGP_AJ_G0023038.1 mouse_genomes_project 16 91102009 91108257 - MGP_AJ_P0045224 Pigp protein_coding protein_coding MGP_AJ_T0045225.1 MGP_AJ_G0023038.1 mouse_genomes_project 16 91102009 91108578 - MGP_AJ_P0045225 Pigp protein_coding protein_coding MGP_AJ_T0045226.1 MGP_AJ_G0023038.1 mouse_genomes_project 16 91102009 91108275 - MGP_AJ_P0045226 Pigp protein_coding protein_coding MGP_AJ_T0045227.1 MGP_AJ_G0023038.1 mouse_genomes_project 16 91102009 91108578 - MGP_AJ_P0045227 Pigp protein_coding protein_coding MGP_AJ_T0045228.1 MGP_AJ_G0023038.1 mouse_genomes_project 16 91102014 91103080 - Pigp protein_coding processed_transcript MGP_AJ_T0045229.1 MGP_AJ_G0023038.1 mouse_genomes_project 16 91102268 91108072 - MGP_AJ_P0045229 Pigp protein_coding protein_coding MGP_AJ_T0044928.1 MGP_AJ_G0022945.1 mouse_genomes_project 16 84085776 84092930 - MGP_AJ_P0044928 Rwdd2b protein_coding protein_coding MGP_AJ_T0044929.1 MGP_AJ_G0022945.1 mouse_genomes_project 16 84089063 84092930 - Rwdd2b protein_coding processed_transcript MGP_AJ_T0043519.1 MGP_AJ_G0022565.1 mouse_genomes_project 16 14664549 14678976 - MGP_AJ_P0043519 Zdhhc8 protein_coding protein_coding MGP_AJ_T0000969.1 MGP_AJ_G0000901.1 mouse_genomes_project 16 74259293 74262514 + TEC TEC MGP_AJ_T0044161.1 MGP_AJ_G0022722.1 mouse_genomes_project 16 30371597 30410234 + Heg1 protein_coding retained_intron MGP_AJ_T0044162.1 MGP_AJ_G0022722.1 mouse_genomes_project 16 30371597 30458898 + MGP_AJ_P0044162 Heg1 protein_coding protein_coding MGP_AJ_T0044163.1 MGP_AJ_G0022722.1 mouse_genomes_project 16 30371676 30456765 + MGP_AJ_P0044163 Heg1 protein_coding protein_coding MGP_AJ_T0044164.1 MGP_AJ_G0022722.1 mouse_genomes_project 16 30371743 30458879 + MGP_AJ_P0044164 Heg1 protein_coding unknown_likely_coding MGP_AJ_T0044165.1 MGP_AJ_G0022722.1 mouse_genomes_project 16 30418938 30427609 + Heg1 protein_coding processed_transcript MGP_AJ_T0044166.1 MGP_AJ_G0022722.1 mouse_genomes_project 16 30440493 30448334 + Heg1 protein_coding retained_intron MGP_AJ_T0044167.1 MGP_AJ_G0022722.1 mouse_genomes_project 16 30442887 30456156 + Heg1 protein_coding processed_transcript MGP_AJ_T0044168.1 MGP_AJ_G0022722.1 mouse_genomes_project 16 30443860 30448180 + Heg1 protein_coding retained_intron MGP_AJ_T0003675.1 MGP_AJ_G0003320.1 mouse_genomes_project 16 33024545 33043776 + Gm15845 antisense antisense MGP_AJ_T0043256.1 MGP_AJ_G0022509.1 mouse_genomes_project 16 10973075 11032600 + MGP_AJ_P0043256 A630010A05Rik protein_coding protein_coding MGP_AJ_T0043257.1 MGP_AJ_G0022509.1 mouse_genomes_project 16 10984636 11032622 + MGP_AJ_P0043257 A630010A05Rik protein_coding protein_coding MGP_AJ_T0043258.1 MGP_AJ_G0022509.1 mouse_genomes_project 16 10997778 11032608 + MGP_AJ_P0043258 A630010A05Rik protein_coding protein_coding MGP_AJ_T0043518.1 MGP_AJ_G0022564.1 mouse_genomes_project 16 14661965 14663109 + MGP_AJ_P0043518 Ccdc188 protein_coding protein_coding MGP_AJ_T0044601.1 MGP_AJ_G0022833.1 mouse_genomes_project 16 45596880 45598916 + MGP_AJ_P0044601 Retnlb protein_coding protein_coding MGP_AJ_T0045068.1 MGP_AJ_G0023003.1 mouse_genomes_project 16 87859291 87862526 - MGP_AJ_P0045068 Gm9881 protein_coding protein_coding MGP_AJ_T0044998.1 MGP_AJ_G0022985.1 mouse_genomes_project 16 85872552 85873080 + MGP_AJ_P0044998 Krtap20-2 protein_coding protein_coding MGP_AJ_T0043123.1 MGP_AJ_G0022482.1 mouse_genomes_project 16 7487161 7548050 - MGP_AJ_P0043123 Txndc11 protein_coding protein_coding MGP_AJ_T0043124.1 MGP_AJ_G0022482.1 mouse_genomes_project 16 7487675 7497035 - Txndc11 protein_coding retained_intron MGP_AJ_T0043125.1 MGP_AJ_G0022482.1 mouse_genomes_project 16 7497001 7499602 - Txndc11 protein_coding processed_transcript MGP_AJ_T0043126.1 MGP_AJ_G0022482.1 mouse_genomes_project 16 7497768 7548011 - MGP_AJ_P0043126 Txndc11 protein_coding protein_coding MGP_AJ_T0043127.1 MGP_AJ_G0022482.1 mouse_genomes_project 16 7499484 7547973 - MGP_AJ_P0043127 Txndc11 protein_coding nonsense_mediated_decay MGP_AJ_T0043128.1 MGP_AJ_G0022482.1 mouse_genomes_project 16 7500521 7535923 - Txndc11 protein_coding processed_transcript MGP_AJ_T0043129.1 MGP_AJ_G0022482.1 mouse_genomes_project 16 7517821 7547953 - MGP_AJ_P0043129 Txndc11 protein_coding nonsense_mediated_decay MGP_AJ_T0043130.1 MGP_AJ_G0022482.1 mouse_genomes_project 16 7519167 7548050 - MGP_AJ_P0043130 Txndc11 protein_coding nonsense_mediated_decay MGP_AJ_T0043131.1 MGP_AJ_G0022482.1 mouse_genomes_project 16 7527249 7548013 - MGP_AJ_P0043131 Txndc11 protein_coding protein_coding MGP_AJ_T0044994.1 MGP_AJ_G0022981.1 mouse_genomes_project 16 85823785 85824250 + MGP_AJ_P0044994 Gm10061 protein_coding protein_coding MGP_AJ_T0044205.1 MGP_AJ_G0022732.1 mouse_genomes_project 16 31989134 32041114 - MGP_AJ_P0044205 Sec22a protein_coding protein_coding MGP_AJ_T0044206.1 MGP_AJ_G0022732.1 mouse_genomes_project 16 31992073 32024935 - Sec22a protein_coding processed_transcript MGP_AJ_T0044207.1 MGP_AJ_G0022732.1 mouse_genomes_project 16 32026105 32041011 - Sec22a protein_coding retained_intron MGP_AJ_T0044208.1 MGP_AJ_G0022732.1 mouse_genomes_project 16 32037868 32041048 - Sec22a protein_coding retained_intron MGP_AJ_T0044209.1 MGP_AJ_G0022732.1 mouse_genomes_project 16 32038240 32041043 - Sec22a protein_coding processed_transcript MGP_AJ_T0044074.1 MGP_AJ_G0022705.1 mouse_genomes_project 16 29107168 29119805 - MGP_AJ_P0044074 Slc51a protein_coding protein_coding MGP_AJ_T0043904.1 MGP_AJ_G0022658.1 mouse_genomes_project 16 23180396 23322663 + MGP_AJ_P0043904 Il1rap protein_coding protein_coding MGP_AJ_T0043905.1 MGP_AJ_G0022658.1 mouse_genomes_project 16 23180434 23321752 + MGP_AJ_P0043905 Il1rap protein_coding protein_coding MGP_AJ_T0043906.1 MGP_AJ_G0022658.1 mouse_genomes_project 16 23180445 23299337 + MGP_AJ_P0043906 Il1rap protein_coding protein_coding MGP_AJ_T0043907.1 MGP_AJ_G0022658.1 mouse_genomes_project 16 23180449 23315329 + MGP_AJ_P0043907 Il1rap protein_coding protein_coding MGP_AJ_T0043908.1 MGP_AJ_G0022658.1 mouse_genomes_project 16 23226532 23312653 + MGP_AJ_P0043908 Il1rap protein_coding nonsense_mediated_decay MGP_AJ_T0043909.1 MGP_AJ_G0022658.1 mouse_genomes_project 16 23319832 23327516 + MGP_AJ_P0043909 Il1rap protein_coding nonsense_mediated_decay MGP_AJ_T0043910.1 MGP_AJ_G0022658.1 mouse_genomes_project 16 23324440 23325627 + Il1rap protein_coding processed_transcript MGP_AJ_T0099600.1 MGP_AJ_G0037566.1 mouse_genomes_project 16 19588803 19588909 + Gm23715 snRNA snRNA MGP_AJ_T0098929.1 MGP_AJ_G0036908.1 mouse_genomes_project 16 22632308 22641228 - AU015336 sense_intronic sense_intronic MGP_AJ_T0000955.1 MGP_AJ_G0000888.1 mouse_genomes_project 16 37007540 37007979 + TEC TEC MGP_AJ_T0099604.1 MGP_AJ_G0037570.1 mouse_genomes_project 16 27417868 27417975 + Gm26295 snRNA snRNA MGP_AJ_T0044513.1 MGP_AJ_G0022810.1 mouse_genomes_project 16 41685767 41734759 + MGP_AJ_P0044513 Cd200r2 protein_coding protein_coding MGP_AJ_T0043996.1 MGP_AJ_G0022683.1 mouse_genomes_project 16 28006251 28008597 - MGP_AJ_P0043996 protein_coding protein_coding MGP_AJ_T0044992.1 MGP_AJ_G0022980.1 mouse_genomes_project 16 85813254 85813743 + MGP_AJ_P0044992 Gm6358 protein_coding protein_coding MGP_AJ_T0044993.1 MGP_AJ_G0022980.1 mouse_genomes_project 16 85813347 85813503 + MGP_AJ_P0044993 Gm6358 protein_coding protein_coding MGP_AJ_T0043761.1 MGP_AJ_G0022615.1 mouse_genomes_project 16 17179963 17193112 - MGP_AJ_P0043761 Clcn2 protein_coding protein_coding MGP_AJ_T0043762.1 MGP_AJ_G0022615.1 mouse_genomes_project 16 17179987 17193109 - Clcn2 protein_coding retained_intron MGP_AJ_T0043763.1 MGP_AJ_G0022615.1 mouse_genomes_project 16 17179997 17193159 - Clcn2 protein_coding retained_intron MGP_AJ_T0043764.1 MGP_AJ_G0022615.1 mouse_genomes_project 16 17180222 17193106 - MGP_AJ_P0043764 Clcn2 protein_coding protein_coding MGP_AJ_T0043765.1 MGP_AJ_G0022615.1 mouse_genomes_project 16 17182537 17194751 - MGP_AJ_P0043765 Clcn2 protein_coding nonsense_mediated_decay MGP_AJ_T0043766.1 MGP_AJ_G0022615.1 mouse_genomes_project 16 17184172 17186123 - Clcn2 protein_coding retained_intron MGP_AJ_T0043767.1 MGP_AJ_G0022615.1 mouse_genomes_project 16 17184704 17185733 - Clcn2 protein_coding retained_intron MGP_AJ_T0043768.1 MGP_AJ_G0022615.1 mouse_genomes_project 16 17187087 17188971 - Clcn2 protein_coding retained_intron MGP_AJ_T0043769.1 MGP_AJ_G0022615.1 mouse_genomes_project 16 17189316 17190674 - Clcn2 protein_coding retained_intron MGP_AJ_T0043109.1 MGP_AJ_G0022473.1 mouse_genomes_project 16 7193606 7195335 - MGP_AJ_P0043109 Socs1 protein_coding protein_coding MGP_AJ_T0045057.1 MGP_AJ_G0023001.1 mouse_genomes_project 16 87704103 87734593 - MGP_AJ_P0045057 Paxbp1 protein_coding protein_coding MGP_AJ_T0045058.1 MGP_AJ_G0023001.1 mouse_genomes_project 16 87704982 87734214 - MGP_AJ_P0045058 Paxbp1 protein_coding nonsense_mediated_decay MGP_AJ_T0045059.1 MGP_AJ_G0023001.1 mouse_genomes_project 16 87706915 87709298 - Paxbp1 protein_coding processed_transcript MGP_AJ_T0045060.1 MGP_AJ_G0023001.1 mouse_genomes_project 16 87714877 87720884 - Paxbp1 protein_coding retained_intron MGP_AJ_T0045061.1 MGP_AJ_G0023001.1 mouse_genomes_project 16 87715622 87720582 - MGP_AJ_P0045061 Paxbp1 protein_coding nonsense_mediated_decay MGP_AJ_T0045062.1 MGP_AJ_G0023001.1 mouse_genomes_project 16 87715741 87717705 - Paxbp1 protein_coding retained_intron MGP_AJ_T0045063.1 MGP_AJ_G0023001.1 mouse_genomes_project 16 87720516 87724960 - Paxbp1 protein_coding retained_intron MGP_AJ_T0045064.1 MGP_AJ_G0023001.1 mouse_genomes_project 16 87721631 87734404 - Paxbp1 protein_coding processed_transcript MGP_AJ_T0099610.1 MGP_AJ_G0037576.1 mouse_genomes_project 16 32936284 32936389 - Gm24801 snRNA snRNA MGP_AJ_T0044750.1 MGP_AJ_G0022875.1 mouse_genomes_project 16 55478497 55480997 - MGP_AJ_P0044750 Olfr172 protein_coding protein_coding MGP_AJ_T0017519.1 MGP_AJ_G0015300.1 mouse_genomes_project 16 84149339 84157117 + B130034C11Rik processed_transcript retained_intron MGP_AJ_T0017520.1 MGP_AJ_G0015300.1 mouse_genomes_project 16 84149413 84157320 + B130034C11Rik processed_transcript processed_transcript MGP_AJ_T0044043.1 MGP_AJ_G0022694.1 mouse_genomes_project 16 28729434 28738643 + MGP_AJ_P0044043 Cep19 protein_coding protein_coding MGP_AJ_T0044044.1 MGP_AJ_G0022694.1 mouse_genomes_project 16 28729586 28738625 + MGP_AJ_P0044044 Cep19 protein_coding protein_coding MGP_AJ_T0044045.1 MGP_AJ_G0022694.1 mouse_genomes_project 16 28733451 28738629 + MGP_AJ_P0044045 Cep19 protein_coding protein_coding MGP_AJ_T0013156.1 MGP_AJ_G0011251.1 mouse_genomes_project 16 28553731 28554611 + processed_pseudogene processed_pseudogene MGP_AJ_T0043483.1 MGP_AJ_G0022553.1 mouse_genomes_project 16 14270552 14273641 - MGP_AJ_P0043483 Car15 protein_coding protein_coding MGP_AJ_T0044176.1 MGP_AJ_G0022725.1 mouse_genomes_project 16 30644002 30656259 - MGP_AJ_P0044176 Umps protein_coding protein_coding MGP_AJ_T0044177.1 MGP_AJ_G0022725.1 mouse_genomes_project 16 30644014 30656224 - MGP_AJ_P0044177 Umps protein_coding nonsense_mediated_decay MGP_AJ_T0044384.1 MGP_AJ_G0022784.1 mouse_genomes_project 16 35262814 35295711 + MGP_AJ_P0044384 Tmem39a protein_coding protein_coding MGP_AJ_T0044385.1 MGP_AJ_G0022784.1 mouse_genomes_project 16 35266938 35296683 + MGP_AJ_P0044385 Tmem39a protein_coding protein_coding MGP_AJ_T0044386.1 MGP_AJ_G0022784.1 mouse_genomes_project 16 35266938 35296683 + MGP_AJ_P0044386 Tmem39a protein_coding protein_coding MGP_AJ_T0044387.1 MGP_AJ_G0022784.1 mouse_genomes_project 16 35266987 35290778 + MGP_AJ_P0044387 Tmem39a protein_coding protein_coding MGP_AJ_T0044388.1 MGP_AJ_G0022784.1 mouse_genomes_project 16 35267012 35277723 + Tmem39a protein_coding processed_transcript MGP_AJ_T0044389.1 MGP_AJ_G0022784.1 mouse_genomes_project 16 35268315 35286521 + MGP_AJ_P0044389 Tmem39a protein_coding nonsense_mediated_decay MGP_AJ_T0044390.1 MGP_AJ_G0022784.1 mouse_genomes_project 16 35279974 35289946 + Tmem39a protein_coding retained_intron MGP_AJ_T0044391.1 MGP_AJ_G0022784.1 mouse_genomes_project 16 35280297 35295963 + MGP_AJ_P0044391 Tmem39a protein_coding protein_coding MGP_AJ_T0044392.1 MGP_AJ_G0022784.1 mouse_genomes_project 16 35286629 35295463 + MGP_AJ_P0044392 Tmem39a protein_coding protein_coding MGP_AJ_T0044393.1 MGP_AJ_G0022784.1 mouse_genomes_project 16 35289936 35291411 + Tmem39a protein_coding retained_intron MGP_AJ_T0044394.1 MGP_AJ_G0022784.1 mouse_genomes_project 16 35290013 35291160 + Tmem39a protein_coding retained_intron MGP_AJ_T0044395.1 MGP_AJ_G0022784.1 mouse_genomes_project 16 35290028 35295666 + MGP_AJ_P0044395 Tmem39a protein_coding protein_coding MGP_AJ_T0044396.1 MGP_AJ_G0022784.1 mouse_genomes_project 16 35291731 35295867 + Tmem39a protein_coding processed_transcript MGP_AJ_T0044397.1 MGP_AJ_G0022784.1 mouse_genomes_project 16 35292559 35295827 + Tmem39a protein_coding retained_intron MGP_AJ_T0045328.1 MGP_AJ_G0023050.1 mouse_genomes_project 16 92896885 92932503 - MGP_AJ_P0045328 Lca5l protein_coding protein_coding MGP_AJ_T0045329.1 MGP_AJ_G0023050.1 mouse_genomes_project 16 92897384 92918367 - MGP_AJ_P0045329 Lca5l protein_coding unknown_likely_coding MGP_AJ_T0045330.1 MGP_AJ_G0023050.1 mouse_genomes_project 16 92897546 92932510 - MGP_AJ_P0045330 Lca5l protein_coding protein_coding MGP_AJ_T0045331.1 MGP_AJ_G0023050.1 mouse_genomes_project 16 92898977 92932503 - Lca5l protein_coding retained_intron MGP_AJ_T0045332.1 MGP_AJ_G0023050.1 mouse_genomes_project 16 92921830 92932510 - Lca5l protein_coding processed_transcript MGP_AJ_T0043427.1 MGP_AJ_G0022545.1 mouse_genomes_project 16 13973990 13990773 - MGP_AJ_P0043427 Lrrc74b protein_coding protein_coding MGP_AJ_T0043428.1 MGP_AJ_G0022545.1 mouse_genomes_project 16 13973990 13990773 - MGP_AJ_P0043428 Lrrc74b protein_coding protein_coding MGP_AJ_T0043429.1 MGP_AJ_G0022545.1 mouse_genomes_project 16 13974955 13983958 - Lrrc74b protein_coding processed_transcript MGP_AJ_T0043430.1 MGP_AJ_G0022545.1 mouse_genomes_project 16 13978336 13990770 - MGP_AJ_P0043430 Lrrc74b protein_coding protein_coding MGP_AJ_T0006842.1 MGP_AJ_G0005635.1 mouse_genomes_project 16 18366781 18369107 - Gm26744 lincRNA lincRNA MGP_AJ_T0045042.1 MGP_AJ_G0022999.1 mouse_genomes_project 16 87615261 87624298 - MGP_AJ_P0045042 1110004E09Rik protein_coding protein_coding MGP_AJ_T0045043.1 MGP_AJ_G0022999.1 mouse_genomes_project 16 87615405 87619436 - MGP_AJ_P0045043 1110004E09Rik protein_coding protein_coding MGP_AJ_T0045044.1 MGP_AJ_G0022999.1 mouse_genomes_project 16 87615422 87624398 - MGP_AJ_P0045044 1110004E09Rik protein_coding nonsense_mediated_decay MGP_AJ_T0045045.1 MGP_AJ_G0022999.1 mouse_genomes_project 16 87616571 87624194 - MGP_AJ_P0045045 1110004E09Rik protein_coding protein_coding MGP_AJ_T0045046.1 MGP_AJ_G0022999.1 mouse_genomes_project 16 87616634 87623977 - MGP_AJ_P0045046 1110004E09Rik protein_coding protein_coding MGP_AJ_T0045047.1 MGP_AJ_G0022999.1 mouse_genomes_project 16 87616832 87624297 - 1110004E09Rik protein_coding processed_transcript MGP_AJ_T0101736.1 MGP_AJ_G0039671.1 mouse_genomes_project 16 560797 563302 + transcribed_processed_pseudogene processed_transcript MGP_AJ_T0101737.1 MGP_AJ_G0039671.1 mouse_genomes_project 16 562401 563195 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0044780.1 MGP_AJ_G0022892.1 mouse_genomes_project 16 56062569 56063493 - MGP_AJ_P0044780 Olfr202 protein_coding protein_coding MGP_AJ_T0044726.1 MGP_AJ_G0022869.1 mouse_genomes_project 16 55178544 55234701 - MGP_AJ_P0044726 St3gal6 protein_coding protein_coding MGP_AJ_T0044727.1 MGP_AJ_G0022869.1 mouse_genomes_project 16 55180172 55235518 - MGP_AJ_P0044727 St3gal6 protein_coding protein_coding MGP_AJ_T0044728.1 MGP_AJ_G0022869.1 mouse_genomes_project 16 55180720 55235460 - MGP_AJ_P0044728 St3gal6 protein_coding protein_coding MGP_AJ_T0044729.1 MGP_AJ_G0022869.1 mouse_genomes_project 16 55186412 55234828 - St3gal6 protein_coding processed_transcript MGP_AJ_T0044730.1 MGP_AJ_G0022869.1 mouse_genomes_project 16 55197024 55200145 - St3gal6 protein_coding retained_intron MGP_AJ_T0044731.1 MGP_AJ_G0022869.1 mouse_genomes_project 16 55199638 55234719 - St3gal6 protein_coding processed_transcript MGP_AJ_T0044732.1 MGP_AJ_G0022869.1 mouse_genomes_project 16 55199651 55235444 - MGP_AJ_P0044732 St3gal6 protein_coding protein_coding MGP_AJ_T0044733.1 MGP_AJ_G0022869.1 mouse_genomes_project 16 55204410 55235444 - MGP_AJ_P0044733 St3gal6 protein_coding protein_coding MGP_AJ_T0044734.1 MGP_AJ_G0022869.1 mouse_genomes_project 16 55204462 55210383 - St3gal6 protein_coding processed_transcript MGP_AJ_T0044735.1 MGP_AJ_G0022869.1 mouse_genomes_project 16 55204464 55234619 - St3gal6 protein_coding processed_transcript MGP_AJ_T0044736.1 MGP_AJ_G0022869.1 mouse_genomes_project 16 55204473 55235409 - St3gal6 protein_coding processed_transcript MGP_AJ_T0044737.1 MGP_AJ_G0022869.1 mouse_genomes_project 16 55204473 55234999 - St3gal6 protein_coding processed_transcript MGP_AJ_T0044738.1 MGP_AJ_G0022869.1 mouse_genomes_project 16 55214015 55235033 - St3gal6 protein_coding processed_transcript MGP_AJ_T0044739.1 MGP_AJ_G0022869.1 mouse_genomes_project 16 55214015 55219075 - St3gal6 protein_coding retained_intron MGP_AJ_T0044988.1 MGP_AJ_G0022977.1 mouse_genomes_project 16 85706274 85706874 - MGP_AJ_P0044988 Krtap6-5 protein_coding protein_coding MGP_AJ_T0042933.1 MGP_AJ_G0022428.1 mouse_genomes_project 16 943135 943660 - protein_coding retained_intron MGP_AJ_T0042934.1 MGP_AJ_G0022428.1 mouse_genomes_project 16 943135 951606 - MGP_AJ_P0042934 protein_coding nonsense_mediated_decay MGP_AJ_T0042935.1 MGP_AJ_G0022428.1 mouse_genomes_project 16 943135 951658 - MGP_AJ_P0042935 protein_coding protein_coding MGP_AJ_T0042936.1 MGP_AJ_G0022428.1 mouse_genomes_project 16 943273 944826 - protein_coding retained_intron MGP_AJ_T0044056.1 MGP_AJ_G0022696.1 mouse_genomes_project 16 28812414 28813178 + MGP_AJ_P0044056 Bex6 protein_coding protein_coding MGP_AJ_T0044476.1 MGP_AJ_G0022802.1 mouse_genomes_project 16 41042509 41139269 - MGP_AJ_P0044476 Sidt1 protein_coding protein_coding MGP_AJ_T0044477.1 MGP_AJ_G0022802.1 mouse_genomes_project 16 41043966 41138806 - MGP_AJ_P0044477 Sidt1 protein_coding protein_coding MGP_AJ_T0044478.1 MGP_AJ_G0022802.1 mouse_genomes_project 16 41077049 41086312 - Sidt1 protein_coding retained_intron MGP_AJ_T0044479.1 MGP_AJ_G0022802.1 mouse_genomes_project 16 41085871 41086971 - MGP_AJ_P0044479 Sidt1 protein_coding protein_coding MGP_AJ_T0044480.1 MGP_AJ_G0022802.1 mouse_genomes_project 16 41088722 41138819 - Sidt1 protein_coding processed_transcript MGP_AJ_T0013195.1 MGP_AJ_G0011290.1 mouse_genomes_project 16 72811140 72811888 + processed_pseudogene processed_pseudogene MGP_AJ_T0098603.1 MGP_AJ_G0036587.1 mouse_genomes_project 16 1664235 1664357 - n-R5s30 rRNA rRNA MGP_AJ_T0045301.1 MGP_AJ_G0023046.1 mouse_genomes_project 16 92709447 92720079 - MGP_AJ_P0045301 Psmg1 protein_coding protein_coding MGP_AJ_T0045302.1 MGP_AJ_G0023046.1 mouse_genomes_project 16 92709551 92720009 - MGP_AJ_P0045302 Psmg1 protein_coding nonsense_mediated_decay MGP_AJ_T0045303.1 MGP_AJ_G0023046.1 mouse_genomes_project 16 92709551 92720009 - MGP_AJ_P0045303 Psmg1 protein_coding protein_coding MGP_AJ_T0045304.1 MGP_AJ_G0023046.1 mouse_genomes_project 16 92717104 92719017 - Psmg1 protein_coding retained_intron MGP_AJ_T0043401.1 MGP_AJ_G0022540.1 mouse_genomes_project 16 13832110 13857969 + MGP_AJ_P0043401 Snap29 protein_coding protein_coding MGP_AJ_T0044996.1 MGP_AJ_G0022983.1 mouse_genomes_project 16 85842030 85842177 + MGP_AJ_P0044996 Gm7735 protein_coding protein_coding MGP_AJ_T0098609.1 MGP_AJ_G0036593.1 mouse_genomes_project 16 34534825 34534941 + n-R5s34 rRNA rRNA MGP_AJ_T0003696.1 MGP_AJ_G0003336.1 mouse_genomes_project 16 89320923 89328115 + Gm26626 antisense antisense MGP_AJ_T0100890.1 MGP_AJ_G0038856.1 mouse_genomes_project 16 52768232 52768367 - Gm22422 snoRNA snoRNA MGP_AJ_T0043955.1 MGP_AJ_G0022672.1 mouse_genomes_project 16 26850628 26861765 - MGP_AJ_P0043955 Cpn2 protein_coding protein_coding MGP_AJ_T0017488.1 MGP_AJ_G0015289.1 mouse_genomes_project 16 16985926 16993735 - Gm16618 processed_transcript processed_transcript MGP_AJ_T0044857.1 MGP_AJ_G0022920.1 mouse_genomes_project 16 72244894 72288688 - MGP_AJ_P0044857 Lipi protein_coding protein_coding MGP_AJ_T0044858.1 MGP_AJ_G0022920.1 mouse_genomes_project 16 72244924 72270248 - Lipi protein_coding processed_transcript MGP_AJ_T0043080.1 MGP_AJ_G0022467.1 mouse_genomes_project 16 6761532 6800376 - MGP_AJ_P0043080 Tekt5 protein_coding protein_coding MGP_AJ_T0043081.1 MGP_AJ_G0022467.1 mouse_genomes_project 16 6764752 6800334 - MGP_AJ_P0043081 Tekt5 protein_coding protein_coding MGP_AJ_T0099631.1 MGP_AJ_G0037597.1 mouse_genomes_project 16 75310481 75310588 + Gm24861 snRNA snRNA MGP_AJ_T0102357.1 MGP_AJ_G0040099.1 mouse_genomes_project 16 10326254 10328227 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0043228.1 MGP_AJ_G0022501.1 mouse_genomes_project 16 10388971 10394194 - MGP_AJ_P0043228 Ifitm7 protein_coding protein_coding MGP_AJ_T0043229.1 MGP_AJ_G0022501.1 mouse_genomes_project 16 10390068 10391893 - MGP_AJ_P0043229 Ifitm7 protein_coding protein_coding MGP_AJ_T0043913.1 MGP_AJ_G0022660.1 mouse_genomes_project 16 23891276 23934727 + MGP_AJ_P0043913 Ostn protein_coding protein_coding MGP_AJ_T0101739.1 MGP_AJ_G0039673.1 mouse_genomes_project 16 34562677 34563767 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0017525.1 MGP_AJ_G0015304.1 mouse_genomes_project 16 88304507 88316845 + Gm15964 processed_transcript processed_transcript MGP_AJ_T0044660.1 MGP_AJ_G0022851.1 mouse_genomes_project 16 52705451 52741415 + MGP_AJ_P0044660 Zbtb11 protein_coding protein_coding MGP_AJ_T0044661.1 MGP_AJ_G0022851.1 mouse_genomes_project 16 52720495 52723651 + Zbtb11 protein_coding retained_intron MGP_AJ_T0044662.1 MGP_AJ_G0022851.1 mouse_genomes_project 16 52737693 52741415 + Zbtb11 protein_coding retained_intron MGP_AJ_T0044219.1 MGP_AJ_G0022735.1 mouse_genomes_project 16 32374880 32449906 - MGP_AJ_P0044219 Dirc2 protein_coding protein_coding MGP_AJ_T0044220.1 MGP_AJ_G0022735.1 mouse_genomes_project 16 32378366 32449880 - MGP_AJ_P0044220 Dirc2 protein_coding nonsense_mediated_decay MGP_AJ_T0043028.1 MGP_AJ_G0022453.1 mouse_genomes_project 16 4758141 4776716 - MGP_AJ_P0043028 Tmem114 protein_coding protein_coding MGP_AJ_T0000017.1 MGP_AJ_G0000011.1 mouse_genomes_project 16 15528688 15529142 - MGP_AJ_P0000017 Iglc1 IG_C_gene IG_C_gene MGP_AJ_T0042955.1 MGP_AJ_G0022432.1 mouse_genomes_project 16 1036374 1045421 - MGP_AJ_P0042955 Nmral1 protein_coding protein_coding MGP_AJ_T0042956.1 MGP_AJ_G0022432.1 mouse_genomes_project 16 1037632 1045468 - MGP_AJ_P0042956 Nmral1 protein_coding protein_coding MGP_AJ_T0042957.1 MGP_AJ_G0022432.1 mouse_genomes_project 16 1037632 1045668 - MGP_AJ_P0042957 Nmral1 protein_coding protein_coding MGP_AJ_T0042958.1 MGP_AJ_G0022432.1 mouse_genomes_project 16 1038610 1045424 - MGP_AJ_P0042958 Nmral1 protein_coding protein_coding MGP_AJ_T0042959.1 MGP_AJ_G0022432.1 mouse_genomes_project 16 1040820 1045400 - Nmral1 protein_coding retained_intron MGP_AJ_T0042960.1 MGP_AJ_G0022432.1 mouse_genomes_project 16 1042136 1045416 - Nmral1 protein_coding retained_intron MGP_AJ_T0003655.1 MGP_AJ_G0003305.1 mouse_genomes_project 16 13554612 13555421 + Gm15646 antisense antisense MGP_AJ_T0043722.1 MGP_AJ_G0022611.1 mouse_genomes_project 16 17093654 17095727 - MGP_AJ_P0043722 Camk2n2 protein_coding protein_coding MGP_AJ_T0099611.1 MGP_AJ_G0037577.1 mouse_genomes_project 16 33014655 33014760 + Gm23306 snRNA snRNA MGP_AJ_T0043482.1 MGP_AJ_G0022552.1 mouse_genomes_project 16 14232579 14243586 + MGP_AJ_P0043482 Scarf2 protein_coding protein_coding MGP_AJ_T0043293.1 MGP_AJ_G0022521.1 mouse_genomes_project 16 13159998 13244669 - MGP_AJ_P0043293 Spag6l protein_coding protein_coding MGP_AJ_T0043294.1 MGP_AJ_G0022521.1 mouse_genomes_project 16 13173252 13244676 - Spag6l protein_coding retained_intron MGP_AJ_T0043295.1 MGP_AJ_G0022521.1 mouse_genomes_project 16 13197800 13244637 - Spag6l protein_coding processed_transcript MGP_AJ_T0043296.1 MGP_AJ_G0022521.1 mouse_genomes_project 16 13197834 13244700 - Spag6l protein_coding processed_transcript MGP_AJ_T0043297.1 MGP_AJ_G0022521.1 mouse_genomes_project 16 13236258 13244812 - Spag6l protein_coding processed_transcript MGP_AJ_T0043298.1 MGP_AJ_G0022521.1 mouse_genomes_project 16 13236530 13244669 - Spag6l protein_coding processed_transcript MGP_AJ_T0043299.1 MGP_AJ_G0022521.1 mouse_genomes_project 16 13240210 13244663 - Spag6l protein_coding processed_transcript MGP_AJ_T0013176.1 MGP_AJ_G0011271.1 mouse_genomes_project 16 42007633 42008035 + processed_pseudogene processed_pseudogene MGP_AJ_T0006848.1 MGP_AJ_G0005641.1 mouse_genomes_project 16 26598415 26611216 + 4632428C04Rik lincRNA lincRNA MGP_AJ_T0043915.1 MGP_AJ_G0022662.1 mouse_genomes_project 16 23936878 23957607 - MGP_AJ_P0043915 Uts2b protein_coding protein_coding MGP_AJ_T0013149.1 MGP_AJ_G0011244.1 mouse_genomes_project 16 18763924 18764319 + processed_pseudogene processed_pseudogene MGP_AJ_T0044611.1 MGP_AJ_G0022837.1 mouse_genomes_project 16 45768487 45793922 + MGP_AJ_P0044611 C330027C09Rik protein_coding protein_coding MGP_AJ_T0044612.1 MGP_AJ_G0022837.1 mouse_genomes_project 16 45768490 45793922 + MGP_AJ_P0044612 C330027C09Rik protein_coding protein_coding MGP_AJ_T0044613.1 MGP_AJ_G0022837.1 mouse_genomes_project 16 45768525 45775282 + MGP_AJ_P0044613 C330027C09Rik protein_coding nonsense_mediated_decay MGP_AJ_T0044614.1 MGP_AJ_G0022837.1 mouse_genomes_project 16 45775060 45776263 + C330027C09Rik protein_coding retained_intron MGP_AJ_T0044615.1 MGP_AJ_G0022837.1 mouse_genomes_project 16 45782619 45793868 + C330027C09Rik protein_coding retained_intron MGP_AJ_T0044616.1 MGP_AJ_G0022837.1 mouse_genomes_project 16 45784638 45787499 + C330027C09Rik protein_coding retained_intron MGP_AJ_T0044617.1 MGP_AJ_G0022837.1 mouse_genomes_project 16 45787503 45788558 + C330027C09Rik protein_coding retained_intron MGP_AJ_T0044618.1 MGP_AJ_G0022837.1 mouse_genomes_project 16 45790045 45793926 + C330027C09Rik protein_coding retained_intron MGP_AJ_T0006845.1 MGP_AJ_G0005638.1 mouse_genomes_project 16 21657591 21667007 + A230028O05Rik lincRNA lincRNA MGP_AJ_T0044032.1 MGP_AJ_G0022692.1 mouse_genomes_project 16 28646395 28709723 - MGP_AJ_P0044032 Pak2 protein_coding protein_coding MGP_AJ_T0045065.1 MGP_AJ_G0023002.1 mouse_genomes_project 16 87743984 87759195 - MGP_AJ_P0045065 4932438H23Rik protein_coding protein_coding MGP_AJ_T0045066.1 MGP_AJ_G0023002.1 mouse_genomes_project 16 87743984 87759195 - MGP_AJ_P0045066 4932438H23Rik protein_coding protein_coding MGP_AJ_T0045067.1 MGP_AJ_G0023002.1 mouse_genomes_project 16 87745887 87785141 - MGP_AJ_P0045067 4932438H23Rik protein_coding protein_coding MGP_AJ_T0099615.1 MGP_AJ_G0037581.1 mouse_genomes_project 16 33112278 33112381 + Gm25903 snRNA snRNA MGP_AJ_T0043562.1 MGP_AJ_G0022572.1 mouse_genomes_project 16 14876220 14929180 + MGP_AJ_P0043562 Txnrd2 protein_coding protein_coding MGP_AJ_T0043563.1 MGP_AJ_G0022572.1 mouse_genomes_project 16 14876253 14929183 + MGP_AJ_P0043563 Txnrd2 protein_coding protein_coding MGP_AJ_T0043564.1 MGP_AJ_G0022572.1 mouse_genomes_project 16 14876253 14929186 + MGP_AJ_P0043564 Txnrd2 protein_coding protein_coding MGP_AJ_T0043565.1 MGP_AJ_G0022572.1 mouse_genomes_project 16 14876274 14906581 + MGP_AJ_P0043565 Txnrd2 protein_coding protein_coding MGP_AJ_T0043566.1 MGP_AJ_G0022572.1 mouse_genomes_project 16 14876274 14929180 + MGP_AJ_P0043566 Txnrd2 protein_coding protein_coding MGP_AJ_T0043567.1 MGP_AJ_G0022572.1 mouse_genomes_project 16 14876274 14929180 + MGP_AJ_P0043567 Txnrd2 protein_coding protein_coding MGP_AJ_T0043568.1 MGP_AJ_G0022572.1 mouse_genomes_project 16 14876277 14929184 + MGP_AJ_P0043568 Txnrd2 protein_coding nonsense_mediated_decay MGP_AJ_T0043569.1 MGP_AJ_G0022572.1 mouse_genomes_project 16 14876281 14929183 + MGP_AJ_P0043569 Txnrd2 protein_coding protein_coding MGP_AJ_T0043570.1 MGP_AJ_G0022572.1 mouse_genomes_project 16 14876298 14887614 + MGP_AJ_P0043570 Txnrd2 protein_coding protein_coding MGP_AJ_T0043571.1 MGP_AJ_G0022572.1 mouse_genomes_project 16 14878533 14887612 + MGP_AJ_P0043571 Txnrd2 protein_coding protein_coding MGP_AJ_T0043572.1 MGP_AJ_G0022572.1 mouse_genomes_project 16 14878761 14893297 + MGP_AJ_P0043572 Txnrd2 protein_coding protein_coding MGP_AJ_T0043573.1 MGP_AJ_G0022572.1 mouse_genomes_project 16 14890891 14892540 + MGP_AJ_P0043573 Txnrd2 protein_coding protein_coding MGP_AJ_T0043574.1 MGP_AJ_G0022572.1 mouse_genomes_project 16 14902151 14924802 + Txnrd2 protein_coding processed_transcript MGP_AJ_T0043575.1 MGP_AJ_G0022572.1 mouse_genomes_project 16 14902157 14924848 + Txnrd2 protein_coding processed_transcript MGP_AJ_T0043576.1 MGP_AJ_G0022572.1 mouse_genomes_project 16 14921933 14924811 + Txnrd2 protein_coding processed_transcript MGP_AJ_T0043577.1 MGP_AJ_G0022572.1 mouse_genomes_project 16 14921963 14924800 + Txnrd2 protein_coding processed_transcript MGP_AJ_T0010134.1 MGP_AJ_G0008256.1 mouse_genomes_project 16 29738204 29738277 + Gm22231 miRNA miRNA MGP_AJ_T0043578.1 MGP_AJ_G0022573.1 mouse_genomes_project 16 14947827 15017309 + MGP_AJ_P0043578 Gnb1l protein_coding protein_coding MGP_AJ_T0043579.1 MGP_AJ_G0022573.1 mouse_genomes_project 16 14947882 15003014 + MGP_AJ_P0043579 Gnb1l protein_coding protein_coding MGP_AJ_T0043580.1 MGP_AJ_G0022573.1 mouse_genomes_project 16 14947937 15003198 + Gnb1l protein_coding processed_transcript MGP_AJ_T0043581.1 MGP_AJ_G0022573.1 mouse_genomes_project 16 14947945 15003064 + MGP_AJ_P0043581 Gnb1l protein_coding protein_coding MGP_AJ_T0043582.1 MGP_AJ_G0022573.1 mouse_genomes_project 16 14947945 15017257 + MGP_AJ_P0043582 Gnb1l protein_coding nonsense_mediated_decay MGP_AJ_T0043583.1 MGP_AJ_G0022573.1 mouse_genomes_project 16 14947947 15017309 + MGP_AJ_P0043583 Gnb1l protein_coding protein_coding MGP_AJ_T0043584.1 MGP_AJ_G0022573.1 mouse_genomes_project 16 14947947 15017309 + MGP_AJ_P0043584 Gnb1l protein_coding protein_coding MGP_AJ_T0043585.1 MGP_AJ_G0022573.1 mouse_genomes_project 16 14947950 15003137 + Gnb1l protein_coding processed_transcript MGP_AJ_T0043586.1 MGP_AJ_G0022573.1 mouse_genomes_project 16 14947956 14994851 + MGP_AJ_P0043586 Gnb1l protein_coding protein_coding MGP_AJ_T0043588.1 MGP_AJ_G0022573.1 mouse_genomes_project 16 14947961 15015168 + MGP_AJ_P0043588 Gnb1l protein_coding nonsense_mediated_decay MGP_AJ_T0043589.1 MGP_AJ_G0022573.1 mouse_genomes_project 16 14999368 15003210 + Gnb1l protein_coding processed_transcript MGP_AJ_T0099593.1 MGP_AJ_G0037559.1 mouse_genomes_project 16 13623372 13623479 - Gm22129 snRNA snRNA MGP_AJ_T0098614.1 MGP_AJ_G0036598.1 mouse_genomes_project 16 94268174 94268282 - Gm24777 rRNA rRNA MGP_AJ_T0003694.1 MGP_AJ_G0003334.1 mouse_genomes_project 16 88623564 88629142 + Gm15976 antisense antisense MGP_AJ_T0003664.1 MGP_AJ_G0003313.1 mouse_genomes_project 16 29295288 29298263 - Tnk2os antisense antisense MGP_AJ_T0043832.1 MGP_AJ_G0022635.1 mouse_genomes_project 16 19431766 19439163 + MGP_AJ_P0043832 Ahsg protein_coding protein_coding MGP_AJ_T0044899.1 MGP_AJ_G0022937.1 mouse_genomes_project 16 81517653 81524032 - MGP_AJ_P0044899 Atp5j protein_coding protein_coding MGP_AJ_T0044900.1 MGP_AJ_G0022937.1 mouse_genomes_project 16 81517658 81518601 - Atp5j protein_coding retained_intron MGP_AJ_T0044901.1 MGP_AJ_G0022937.1 mouse_genomes_project 16 81517658 81525296 - MGP_AJ_P0044901 Atp5j protein_coding protein_coding MGP_AJ_T0044902.1 MGP_AJ_G0022937.1 mouse_genomes_project 16 81517658 81525418 - MGP_AJ_P0044902 Atp5j protein_coding protein_coding MGP_AJ_T0044903.1 MGP_AJ_G0022937.1 mouse_genomes_project 16 81517661 81521400 - Atp5j protein_coding retained_intron MGP_AJ_T0044904.1 MGP_AJ_G0022937.1 mouse_genomes_project 16 81518226 81525395 - MGP_AJ_P0044904 Atp5j protein_coding protein_coding MGP_AJ_T0044905.1 MGP_AJ_G0022937.1 mouse_genomes_project 16 81519340 81523669 - Atp5j protein_coding processed_transcript MGP_AJ_T0044906.1 MGP_AJ_G0022937.1 mouse_genomes_project 16 81520863 81525091 - Atp5j protein_coding retained_intron MGP_AJ_T0044907.1 MGP_AJ_G0022937.1 mouse_genomes_project 16 81521121 81524948 - Atp5j protein_coding processed_transcript MGP_AJ_T0044908.1 MGP_AJ_G0022937.1 mouse_genomes_project 16 81521161 81524798 - Atp5j protein_coding processed_transcript MGP_AJ_T0044909.1 MGP_AJ_G0022937.1 mouse_genomes_project 16 81523315 81524625 - Atp5j protein_coding retained_intron MGP_AJ_T0044910.1 MGP_AJ_G0022937.1 mouse_genomes_project 16 81524068 81525322 - Atp5j protein_coding retained_intron MGP_AJ_T0003656.1 MGP_AJ_G0003306.1 mouse_genomes_project 16 13567563 13568638 + Gm15648 antisense antisense MGP_AJ_T0044251.1 MGP_AJ_G0022746.1 mouse_genomes_project 16 32855108 32860450 + MGP_AJ_P0044251 protein_coding protein_coding MGP_AJ_T0003657.1 MGP_AJ_G0003307.1 mouse_genomes_project 16 15043717 15061194 + 4930588K23Rik antisense antisense MGP_AJ_T0013180.1 MGP_AJ_G0011275.1 mouse_genomes_project 16 44992938 44993538 + processed_pseudogene processed_pseudogene MGP_AJ_T0010164.1 MGP_AJ_G0008286.1 mouse_genomes_project 16 90092265 90092362 + Mir802 miRNA miRNA MGP_AJ_T0044760.1 MGP_AJ_G0022880.1 mouse_genomes_project 16 55661807 55662911 - MGP_AJ_P0044760 Olfr181 protein_coding protein_coding MGP_AJ_T0044761.1 MGP_AJ_G0022880.1 mouse_genomes_project 16 55661807 55664893 - MGP_AJ_P0044761 Olfr181 protein_coding protein_coding MGP_AJ_T0044762.1 MGP_AJ_G0022880.1 mouse_genomes_project 16 55662435 55664893 - MGP_AJ_P0044762 Olfr181 protein_coding protein_coding MGP_AJ_T0044763.1 MGP_AJ_G0022880.1 mouse_genomes_project 16 55662583 55664857 - MGP_AJ_P0044763 Olfr181 protein_coding protein_coding MGP_AJ_T0044924.1 MGP_AJ_G0022943.1 mouse_genomes_project 16 84009840 84022926 + MGP_AJ_P0044924 N6amt1 protein_coding protein_coding MGP_AJ_T0044925.1 MGP_AJ_G0022943.1 mouse_genomes_project 16 84009855 84021027 + MGP_AJ_P0044925 N6amt1 protein_coding protein_coding MGP_AJ_T0044926.1 MGP_AJ_G0022943.1 mouse_genomes_project 16 84009857 84023040 + MGP_AJ_P0044926 N6amt1 protein_coding protein_coding MGP_AJ_T0099613.1 MGP_AJ_G0037579.1 mouse_genomes_project 16 33075966 33076073 + Gm22349 snRNA snRNA MGP_AJ_T0044510.1 MGP_AJ_G0022809.1 mouse_genomes_project 16 41635719 41662659 + MGP_AJ_P0044510 Cd200r4 protein_coding protein_coding MGP_AJ_T0044511.1 MGP_AJ_G0022809.1 mouse_genomes_project 16 41635742 41662658 + MGP_AJ_P0044511 Cd200r4 protein_coding protein_coding MGP_AJ_T0044512.1 MGP_AJ_G0022809.1 mouse_genomes_project 16 41644982 41662675 + MGP_AJ_P0044512 Cd200r4 protein_coding protein_coding MGP_AJ_T0010130.1 MGP_AJ_G0008252.1 mouse_genomes_project 16 21424713 21424799 + Mir28a miRNA miRNA MGP_AJ_T0044884.1 MGP_AJ_G0022931.1 mouse_genomes_project 16 75241158 75267257 - MGP_AJ_P0044884 D16Ertd472e protein_coding protein_coding MGP_AJ_T0044885.1 MGP_AJ_G0022931.1 mouse_genomes_project 16 75241835 75267257 - MGP_AJ_P0044885 D16Ertd472e protein_coding protein_coding MGP_AJ_T0044886.1 MGP_AJ_G0022931.1 mouse_genomes_project 16 75242107 75267257 - MGP_AJ_P0044886 D16Ertd472e protein_coding protein_coding MGP_AJ_T0044620.1 MGP_AJ_G0022839.1 mouse_genomes_project 16 46064813 46065466 - MGP_AJ_P0044620 Gm5407 protein_coding protein_coding MGP_AJ_T0013184.1 MGP_AJ_G0011279.1 mouse_genomes_project 16 53496265 53496902 + processed_pseudogene processed_pseudogene MGP_AJ_T0003682.1 MGP_AJ_G0003327.1 mouse_genomes_project 16 42743609 42746567 + Gm15640 antisense antisense MGP_AJ_T0043596.1 MGP_AJ_G0022579.1 mouse_genomes_project 16 15236197 15269016 - MGP_AJ_P0043596 Cdc45 protein_coding protein_coding MGP_AJ_T0043597.1 MGP_AJ_G0022579.1 mouse_genomes_project 16 15236203 15268670 - MGP_AJ_P0043597 Cdc45 protein_coding protein_coding MGP_AJ_T0043598.1 MGP_AJ_G0022579.1 mouse_genomes_project 16 15264399 15269031 - MGP_AJ_P0043598 Cdc45 protein_coding protein_coding MGP_AJ_T0100868.1 MGP_AJ_G0038834.1 mouse_genomes_project 16 19678598 19678890 + Snora81 snoRNA snoRNA MGP_AJ_T0044583.1 MGP_AJ_G0022825.1 mouse_genomes_project 16 42766514 42819818 - MGP_AJ_P0044583 Plcxd2 protein_coding protein_coding MGP_AJ_T0003683.1 MGP_AJ_G0003328.1 mouse_genomes_project 16 42752888 42778622 + Gm15638 antisense antisense MGP_AJ_T0003684.1 MGP_AJ_G0003328.1 mouse_genomes_project 16 42752895 42764571 + Gm15638 antisense antisense MGP_AJ_T0003685.1 MGP_AJ_G0003328.1 mouse_genomes_project 16 42752900 42755955 + Gm15638 antisense antisense MGP_AJ_T0003654.1 MGP_AJ_G0003304.1 mouse_genomes_project 16 13502422 13505958 + Gm15585 antisense antisense MGP_AJ_T0043881.1 MGP_AJ_G0022650.1 mouse_genomes_project 16 20551754 20575819 - MGP_AJ_P0043881 Bcl6 protein_coding protein_coding MGP_AJ_T0043882.1 MGP_AJ_G0022650.1 mouse_genomes_project 16 20554396 20559208 - Bcl6 protein_coding retained_intron MGP_AJ_T0044960.1 MGP_AJ_G0022951.1 mouse_genomes_project 16 85167368 85168540 - MGP_AJ_P0044960 Cldn17 protein_coding protein_coding MGP_AJ_T0010145.1 MGP_AJ_G0008267.1 mouse_genomes_project 16 50602809 50602874 + Gm25041 miRNA miRNA MGP_AJ_T0043866.1 MGP_AJ_G0022642.1 mouse_genomes_project 16 19717250 19729322 + MGP_AJ_P0043866 Adipoq protein_coding protein_coding MGP_AJ_T0043867.1 MGP_AJ_G0022642.1 mouse_genomes_project 16 19717360 19728586 + MGP_AJ_P0043867 Adipoq protein_coding protein_coding MGP_AJ_T0043772.1 MGP_AJ_G0022617.1 mouse_genomes_project 16 17202468 17207784 - MGP_AJ_P0043772 Thpo protein_coding protein_coding MGP_AJ_T0013192.1 MGP_AJ_G0011287.1 mouse_genomes_project 16 71661600 71662608 + processed_pseudogene processed_pseudogene MGP_AJ_T0043132.1 MGP_AJ_G0022483.1 mouse_genomes_project 16 7549991 7590346 - MGP_AJ_P0043132 Zc3h7a protein_coding protein_coding MGP_AJ_T0043133.1 MGP_AJ_G0022483.1 mouse_genomes_project 16 7550525 7554289 - Zc3h7a protein_coding retained_intron MGP_AJ_T0043134.1 MGP_AJ_G0022483.1 mouse_genomes_project 16 7552442 7555305 - Zc3h7a protein_coding retained_intron MGP_AJ_T0043135.1 MGP_AJ_G0022483.1 mouse_genomes_project 16 7554112 7561583 - MGP_AJ_P0043135 Zc3h7a protein_coding nonsense_mediated_decay MGP_AJ_T0043136.1 MGP_AJ_G0022483.1 mouse_genomes_project 16 7554206 7590294 - MGP_AJ_P0043136 Zc3h7a protein_coding nonsense_mediated_decay MGP_AJ_T0043137.1 MGP_AJ_G0022483.1 mouse_genomes_project 16 7555329 7590277 - MGP_AJ_P0043137 Zc3h7a protein_coding unknown_likely_coding MGP_AJ_T0043138.1 MGP_AJ_G0022483.1 mouse_genomes_project 16 7558282 7590053 - MGP_AJ_P0043138 Zc3h7a protein_coding protein_coding MGP_AJ_T0043139.1 MGP_AJ_G0022483.1 mouse_genomes_project 16 7558468 7560433 - Zc3h7a protein_coding retained_intron MGP_AJ_T0043140.1 MGP_AJ_G0022483.1 mouse_genomes_project 16 7560434 7564483 - Zc3h7a protein_coding retained_intron MGP_AJ_T0043141.1 MGP_AJ_G0022483.1 mouse_genomes_project 16 7561585 7588930 - MGP_AJ_P0043141 Zc3h7a protein_coding protein_coding MGP_AJ_T0043142.1 MGP_AJ_G0022483.1 mouse_genomes_project 16 7563356 7564287 - Zc3h7a protein_coding retained_intron MGP_AJ_T0043143.1 MGP_AJ_G0022483.1 mouse_genomes_project 16 7564348 7565813 - Zc3h7a protein_coding retained_intron MGP_AJ_T0043144.1 MGP_AJ_G0022483.1 mouse_genomes_project 16 7564741 7569125 - Zc3h7a protein_coding retained_intron MGP_AJ_T0043145.1 MGP_AJ_G0022483.1 mouse_genomes_project 16 7566079 7571658 - Zc3h7a protein_coding retained_intron MGP_AJ_T0043146.1 MGP_AJ_G0022483.1 mouse_genomes_project 16 7567251 7571680 - Zc3h7a protein_coding retained_intron MGP_AJ_T0043147.1 MGP_AJ_G0022483.1 mouse_genomes_project 16 7569576 7588897 - MGP_AJ_P0043147 Zc3h7a protein_coding protein_coding MGP_AJ_T0043148.1 MGP_AJ_G0022483.1 mouse_genomes_project 16 7573964 7589518 - MGP_AJ_P0043148 Zc3h7a protein_coding protein_coding MGP_AJ_T0043149.1 MGP_AJ_G0022483.1 mouse_genomes_project 16 7573974 7590017 - MGP_AJ_P0043149 Zc3h7a protein_coding protein_coding MGP_AJ_T0043150.1 MGP_AJ_G0022483.1 mouse_genomes_project 16 7576387 7590295 - Zc3h7a protein_coding retained_intron MGP_AJ_T0100876.1 MGP_AJ_G0038842.1 mouse_genomes_project 16 32059597 32059800 + Gm25079 snoRNA snoRNA MGP_AJ_T0044821.1 MGP_AJ_G0022910.1 mouse_genomes_project 16 61607333 61614845 + MGP_AJ_P0044821 Cggbp1 protein_coding protein_coding MGP_AJ_T0044822.1 MGP_AJ_G0022910.1 mouse_genomes_project 16 61608039 61611324 + Cggbp1 protein_coding retained_intron MGP_AJ_T0000951.1 MGP_AJ_G0000884.1 mouse_genomes_project 16 15697749 15701219 + TEC TEC MGP_AJ_T0043082.1 MGP_AJ_G0022468.1 mouse_genomes_project 16 6812248 6824751 + MGP_AJ_P0043082 Nubp1 protein_coding protein_coding MGP_AJ_T0043083.1 MGP_AJ_G0022468.1 mouse_genomes_project 16 6812249 6821995 + Nubp1 protein_coding processed_transcript MGP_AJ_T0043084.1 MGP_AJ_G0022468.1 mouse_genomes_project 16 6812254 6820874 + Nubp1 protein_coding retained_intron MGP_AJ_T0043085.1 MGP_AJ_G0022468.1 mouse_genomes_project 16 6812270 6824751 + Nubp1 protein_coding retained_intron MGP_AJ_T0043086.1 MGP_AJ_G0022468.1 mouse_genomes_project 16 6812364 6821760 + Nubp1 protein_coding retained_intron MGP_AJ_T0043088.1 MGP_AJ_G0022468.1 mouse_genomes_project 16 6821558 6823669 + Nubp1 protein_coding processed_transcript MGP_AJ_T0100886.1 MGP_AJ_G0038852.1 mouse_genomes_project 16 49681453 49681579 - Gm25723 snoRNA snoRNA MGP_AJ_T0043304.1 MGP_AJ_G0022524.1 mouse_genomes_project 16 13278133 13278986 - MGP_AJ_P0043304 protein_coding protein_coding MGP_AJ_T0043997.1 MGP_AJ_G0022684.1 mouse_genomes_project 16 28006423 28008278 - MGP_AJ_P0043997 protein_coding protein_coding MGP_AJ_T0044509.1 MGP_AJ_G0022808.1 mouse_genomes_project 16 41586608 41617353 + MGP_AJ_P0044509 Cd200r1 protein_coding protein_coding MGP_AJ_T0013139.1 MGP_AJ_G0011234.1 mouse_genomes_project 16 15400752 15401160 - processed_pseudogene processed_pseudogene MGP_AJ_T0044652.1 MGP_AJ_G0022849.1 mouse_genomes_project 16 52634369 52669487 - MGP_AJ_P0044652 Cep97 protein_coding protein_coding MGP_AJ_T0044653.1 MGP_AJ_G0022849.1 mouse_genomes_project 16 52658896 52669489 - MGP_AJ_P0044653 Cep97 protein_coding protein_coding MGP_AJ_T0044654.1 MGP_AJ_G0022849.1 mouse_genomes_project 16 52658903 52669546 - MGP_AJ_P0044654 Cep97 protein_coding protein_coding MGP_AJ_T0044655.1 MGP_AJ_G0022849.1 mouse_genomes_project 16 52659091 52669525 - MGP_AJ_P0044655 Cep97 protein_coding protein_coding MGP_AJ_T0044774.1 MGP_AJ_G0022886.1 mouse_genomes_project 16 55887182 55888055 - MGP_AJ_P0044774 Olfr193 protein_coding protein_coding MGP_AJ_T0044451.1 MGP_AJ_G0022796.1 mouse_genomes_project 16 40688264 40737329 + MGP_AJ_P0044451 Ccdc191 protein_coding protein_coding MGP_AJ_T0044452.1 MGP_AJ_G0022796.1 mouse_genomes_project 16 40688267 40762699 + MGP_AJ_P0044452 Ccdc191 protein_coding protein_coding MGP_AJ_T0044453.1 MGP_AJ_G0022796.1 mouse_genomes_project 16 40688305 40706952 + MGP_AJ_P0044453 Ccdc191 protein_coding protein_coding MGP_AJ_T0044454.1 MGP_AJ_G0022796.1 mouse_genomes_project 16 40688356 40762089 + MGP_AJ_P0044454 Ccdc191 protein_coding protein_coding MGP_AJ_T0044455.1 MGP_AJ_G0022796.1 mouse_genomes_project 16 40736766 40741783 + Ccdc191 protein_coding processed_transcript MGP_AJ_T0044456.1 MGP_AJ_G0022796.1 mouse_genomes_project 16 40736887 40762699 + MGP_AJ_P0044456 Ccdc191 protein_coding protein_coding MGP_AJ_T0044951.1 MGP_AJ_G0022948.1 mouse_genomes_project 16 84204494 84248460 + MGP_AJ_P0044951 Map3k7cl protein_coding protein_coding MGP_AJ_T0011405.1 MGP_AJ_G0009527.1 mouse_genomes_project 16 16919007 16919282 + Gm23332 misc_RNA misc_RNA MGP_AJ_T0013125.1 MGP_AJ_G0011220.1 mouse_genomes_project 16 7605080 7606092 - processed_pseudogene processed_pseudogene MGP_AJ_T0043420.1 MGP_AJ_G0022544.1 mouse_genomes_project 16 13956645 13959800 - MGP_AJ_P0043420 Thap7 protein_coding protein_coding MGP_AJ_T0043421.1 MGP_AJ_G0022544.1 mouse_genomes_project 16 13956849 13959776 - Thap7 protein_coding retained_intron MGP_AJ_T0043422.1 MGP_AJ_G0022544.1 mouse_genomes_project 16 13956913 13959716 - Thap7 protein_coding retained_intron MGP_AJ_T0043423.1 MGP_AJ_G0022544.1 mouse_genomes_project 16 13957007 13959345 - Thap7 protein_coding retained_intron MGP_AJ_T0043424.1 MGP_AJ_G0022544.1 mouse_genomes_project 16 13957164 13957812 - Thap7 protein_coding retained_intron MGP_AJ_T0043425.1 MGP_AJ_G0022544.1 mouse_genomes_project 16 13957245 13959719 - MGP_AJ_P0043425 Thap7 protein_coding protein_coding MGP_AJ_T0043426.1 MGP_AJ_G0022544.1 mouse_genomes_project 16 13957666 13959320 - Thap7 protein_coding retained_intron MGP_AJ_T0011403.1 MGP_AJ_G0009525.1 mouse_genomes_project 16 4558657 4558931 + Gm23476 misc_RNA misc_RNA MGP_AJ_T0044457.1 MGP_AJ_G0022797.1 mouse_genomes_project 16 40763414 40778241 - MGP_AJ_P0044457 Zdhhc23 protein_coding unknown_likely_coding MGP_AJ_T0044458.1 MGP_AJ_G0022797.1 mouse_genomes_project 16 40767448 40777478 - MGP_AJ_P0044458 Zdhhc23 protein_coding protein_coding MGP_AJ_T0043667.1 MGP_AJ_G0022603.1 mouse_genomes_project 16 16804956 16899642 - MGP_AJ_P0043667 Abcc5 protein_coding protein_coding MGP_AJ_T0043668.1 MGP_AJ_G0022603.1 mouse_genomes_project 16 16804959 16899583 - MGP_AJ_P0043668 Abcc5 protein_coding protein_coding MGP_AJ_T0043669.1 MGP_AJ_G0022603.1 mouse_genomes_project 16 16804961 16872861 - Abcc5 protein_coding retained_intron MGP_AJ_T0043670.1 MGP_AJ_G0022603.1 mouse_genomes_project 16 16812707 16837674 - Abcc5 protein_coding processed_transcript MGP_AJ_T0043671.1 MGP_AJ_G0022603.1 mouse_genomes_project 16 16818414 16837868 - Abcc5 protein_coding retained_intron MGP_AJ_T0043672.1 MGP_AJ_G0022603.1 mouse_genomes_project 16 16842544 16850251 - Abcc5 protein_coding retained_intron MGP_AJ_T0043673.1 MGP_AJ_G0022603.1 mouse_genomes_project 16 16852092 16869811 - Abcc5 protein_coding retained_intron MGP_AJ_T0043674.1 MGP_AJ_G0022603.1 mouse_genomes_project 16 16866082 16899234 - MGP_AJ_P0043674 Abcc5 protein_coding protein_coding MGP_AJ_T0043675.1 MGP_AJ_G0022603.1 mouse_genomes_project 16 16872056 16873526 - Abcc5 protein_coding retained_intron MGP_AJ_T0043676.1 MGP_AJ_G0022603.1 mouse_genomes_project 16 16873999 16899572 - Abcc5 protein_coding retained_intron MGP_AJ_T0043677.1 MGP_AJ_G0022603.1 mouse_genomes_project 16 16874000 16899602 - MGP_AJ_P0043677 Abcc5 protein_coding protein_coding MGP_AJ_T0043678.1 MGP_AJ_G0022603.1 mouse_genomes_project 16 16874001 16877953 - Abcc5 protein_coding processed_transcript MGP_AJ_T0098926.1 MGP_AJ_G0036905.1 mouse_genomes_project 16 1100020 1101733 - Gm15835 sense_intronic sense_intronic MGP_AJ_T0043074.1 MGP_AJ_G0022465.1 mouse_genomes_project 16 6592960 6640075 + MGP_AJ_P0043074 Atf7ip2 protein_coding protein_coding MGP_AJ_T0043075.1 MGP_AJ_G0022465.1 mouse_genomes_project 16 6593154 6633572 + MGP_AJ_P0043075 Atf7ip2 protein_coding protein_coding MGP_AJ_T0043076.1 MGP_AJ_G0022465.1 mouse_genomes_project 16 6593170 6637838 + MGP_AJ_P0043076 Atf7ip2 protein_coding protein_coding MGP_AJ_T0043077.1 MGP_AJ_G0022465.1 mouse_genomes_project 16 6593174 6613925 + MGP_AJ_P0043077 Atf7ip2 protein_coding protein_coding MGP_AJ_T0043078.1 MGP_AJ_G0022465.1 mouse_genomes_project 16 6593195 6615304 + Atf7ip2 protein_coding retained_intron MGP_AJ_T0102360.1 MGP_AJ_G0040102.1 mouse_genomes_project 16 32830185 32831900 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0044117.1 MGP_AJ_G0022713.1 mouse_genomes_project 16 29519284 29533192 + Fyttd1 protein_coding processed_transcript MGP_AJ_T0044118.1 MGP_AJ_G0022713.1 mouse_genomes_project 16 29519565 29550609 + MGP_AJ_P0044118 Fyttd1 protein_coding protein_coding MGP_AJ_T0044119.1 MGP_AJ_G0022713.1 mouse_genomes_project 16 29519568 29550697 + MGP_AJ_P0044119 Fyttd1 protein_coding protein_coding MGP_AJ_T0044120.1 MGP_AJ_G0022713.1 mouse_genomes_project 16 29519597 29537016 + Fyttd1 protein_coding retained_intron MGP_AJ_T0044121.1 MGP_AJ_G0022713.1 mouse_genomes_project 16 29519597 29539010 + Fyttd1 protein_coding processed_transcript MGP_AJ_T0044122.1 MGP_AJ_G0022713.1 mouse_genomes_project 16 29519635 29540612 + Fyttd1 protein_coding retained_intron MGP_AJ_T0044123.1 MGP_AJ_G0022713.1 mouse_genomes_project 16 29524745 29547364 + MGP_AJ_P0044123 Fyttd1 protein_coding protein_coding MGP_AJ_T0044124.1 MGP_AJ_G0022713.1 mouse_genomes_project 16 29536850 29547513 + Fyttd1 protein_coding processed_transcript MGP_AJ_T0044125.1 MGP_AJ_G0022713.1 mouse_genomes_project 16 29540510 29547436 + Fyttd1 protein_coding retained_intron MGP_AJ_T0044126.1 MGP_AJ_G0022713.1 mouse_genomes_project 16 29541986 29547372 + Fyttd1 protein_coding retained_intron MGP_AJ_T0044127.1 MGP_AJ_G0022713.1 mouse_genomes_project 16 29543861 29547338 + Fyttd1 protein_coding retained_intron MGP_AJ_T0044702.1 MGP_AJ_G0022858.1 mouse_genomes_project 16 53455250 53542196 - MGP_AJ_P0044702 Adgrg7 protein_coding protein_coding MGP_AJ_T0045357.1 MGP_AJ_G0023058.1 mouse_genomes_project 16 94209532 94226985 - MGP_AJ_P0045357 Mx1 protein_coding nonsense_mediated_decay MGP_AJ_T0045358.1 MGP_AJ_G0023058.1 mouse_genomes_project 16 94209534 94226983 - MGP_AJ_P0045358 Mx1 protein_coding nonsense_mediated_decay MGP_AJ_T0045359.1 MGP_AJ_G0023058.1 mouse_genomes_project 16 94209534 94226984 - MGP_AJ_P0045359 Mx1 protein_coding protein_coding MGP_AJ_T0045360.1 MGP_AJ_G0023058.1 mouse_genomes_project 16 94209534 94226984 - MGP_AJ_P0045360 Mx1 protein_coding protein_coding MGP_AJ_T0010146.1 MGP_AJ_G0008268.1 mouse_genomes_project 16 52236976 52237043 + Mir5118 miRNA miRNA MGP_AJ_T0100909.1 MGP_AJ_G0038875.1 mouse_genomes_project 16 87278581 87278703 + Gm23406 snoRNA snoRNA MGP_AJ_T0013158.1 MGP_AJ_G0011253.1 mouse_genomes_project 16 28616407 28616690 - processed_pseudogene processed_pseudogene MGP_AJ_T0044257.1 MGP_AJ_G0022751.1 mouse_genomes_project 16 33014819 33025224 - MGP_AJ_P0044257 BC100530 protein_coding protein_coding MGP_AJ_T0044259.1 MGP_AJ_G0022751.1 mouse_genomes_project 16 33014822 33025024 - MGP_AJ_P0044259 BC100530 protein_coding nonsense_mediated_decay MGP_AJ_T0044260.1 MGP_AJ_G0022751.1 mouse_genomes_project 16 33020706 33025027 - BC100530 protein_coding retained_intron MGP_AJ_T0045381.1 MGP_AJ_G0023066.1 mouse_genomes_project 16 94828129 94828363 - MGP_AJ_P0045381 Gm6020 protein_coding protein_coding MGP_AJ_T0100867.1 MGP_AJ_G0038833.1 mouse_genomes_project 16 19678224 19678349 + Gm24201 snoRNA snoRNA MGP_AJ_T0042848.1 MGP_AJ_G0022410.1 mouse_genomes_project 16 72155 80985 + MGP_AJ_P0042848 Zfp263 protein_coding protein_coding MGP_AJ_T0042849.1 MGP_AJ_G0022410.1 mouse_genomes_project 16 72237 80994 + Zfp263 protein_coding retained_intron MGP_AJ_T0042850.1 MGP_AJ_G0022410.1 mouse_genomes_project 16 72244 80099 + Zfp263 protein_coding processed_transcript MGP_AJ_T0042851.1 MGP_AJ_G0022410.1 mouse_genomes_project 16 72294 80994 + MGP_AJ_P0042851 Zfp263 protein_coding nonsense_mediated_decay MGP_AJ_T0042852.1 MGP_AJ_G0022410.1 mouse_genomes_project 16 72422 79486 + Zfp263 protein_coding processed_transcript MGP_AJ_T0042853.1 MGP_AJ_G0022410.1 mouse_genomes_project 16 72657 79311 + Zfp263 protein_coding processed_transcript MGP_AJ_T0042854.1 MGP_AJ_G0022410.1 mouse_genomes_project 16 78091 80988 + MGP_AJ_P0042854 Zfp263 protein_coding protein_coding MGP_AJ_T0043494.1 MGP_AJ_G0022557.1 mouse_genomes_project 16 14334322 14335709 + MGP_AJ_P0043494 Tssk2 protein_coding protein_coding MGP_AJ_T0013138.1 MGP_AJ_G0011233.1 mouse_genomes_project 16 15393899 15394188 + processed_pseudogene processed_pseudogene MGP_AJ_T0010107.1 MGP_AJ_G0008229.1 mouse_genomes_project 16 4977870 4977978 - Gm26445 miRNA miRNA MGP_AJ_T0010139.1 MGP_AJ_G0008261.1 mouse_genomes_project 16 39076154 39076262 - Mir6540 miRNA miRNA MGP_AJ_T0044923.1 MGP_AJ_G0022942.1 mouse_genomes_project 16 82562497 82605954 - MGP_AJ_P0044923 Adamts5 protein_coding protein_coding MGP_AJ_T0044178.1 MGP_AJ_G0022726.1 mouse_genomes_project 16 30663832 30778520 - MGP_AJ_P0044178 protein_coding protein_coding MGP_AJ_T0044179.1 MGP_AJ_G0022726.1 mouse_genomes_project 16 30664737 30668301 - protein_coding retained_intron MGP_AJ_T0044180.1 MGP_AJ_G0022726.1 mouse_genomes_project 16 30665069 31138507 - MGP_AJ_P0044180 protein_coding protein_coding MGP_AJ_T0044181.1 MGP_AJ_G0022726.1 mouse_genomes_project 16 30701451 30778413 - MGP_AJ_P0044181 protein_coding unknown_likely_coding MGP_AJ_T0044182.1 MGP_AJ_G0022726.1 mouse_genomes_project 16 30702679 30846138 - MGP_AJ_P0044182 protein_coding protein_coding MGP_AJ_T0044183.1 MGP_AJ_G0022726.1 mouse_genomes_project 16 30702684 30779623 - MGP_AJ_P0044183 protein_coding protein_coding MGP_AJ_T0044184.1 MGP_AJ_G0022726.1 mouse_genomes_project 16 30702684 31074800 - MGP_AJ_P0044184 protein_coding protein_coding MGP_AJ_T0044185.1 MGP_AJ_G0022726.1 mouse_genomes_project 16 30702693 30778561 - MGP_AJ_P0044185 protein_coding protein_coding MGP_AJ_T0044186.1 MGP_AJ_G0022726.1 mouse_genomes_project 16 30732433 31255471 - MGP_AJ_P0044186 protein_coding protein_coding MGP_AJ_T0044187.1 MGP_AJ_G0022726.1 mouse_genomes_project 16 30834882 31196995 - MGP_AJ_P0044187 protein_coding protein_coding MGP_AJ_T0044188.1 MGP_AJ_G0022726.1 mouse_genomes_project 16 30834883 30945942 - MGP_AJ_P0044188 protein_coding protein_coding MGP_AJ_T0044189.1 MGP_AJ_G0022726.1 mouse_genomes_project 16 30834893 31197033 - MGP_AJ_P0044189 protein_coding protein_coding MGP_AJ_T0044190.1 MGP_AJ_G0022726.1 mouse_genomes_project 16 30834953 30945707 - MGP_AJ_P0044190 protein_coding protein_coding MGP_AJ_T0044191.1 MGP_AJ_G0022726.1 mouse_genomes_project 16 30836258 30945935 - MGP_AJ_P0044191 protein_coding protein_coding MGP_AJ_T0044192.1 MGP_AJ_G0022726.1 mouse_genomes_project 16 30836325 31196891 - MGP_AJ_P0044192 protein_coding protein_coding MGP_AJ_T0044193.1 MGP_AJ_G0022726.1 mouse_genomes_project 16 30860836 30945581 - MGP_AJ_P0044193 protein_coding protein_coding MGP_AJ_T0044194.1 MGP_AJ_G0022726.1 mouse_genomes_project 16 30901514 30945652 - protein_coding retained_intron MGP_AJ_T0044195.1 MGP_AJ_G0022726.1 mouse_genomes_project 16 30926859 30935057 - protein_coding processed_transcript MGP_AJ_T0044196.1 MGP_AJ_G0022726.1 mouse_genomes_project 16 31040207 31044702 - protein_coding processed_transcript MGP_AJ_T0044197.1 MGP_AJ_G0022726.1 mouse_genomes_project 16 31195646 31197062 - protein_coding processed_transcript MGP_AJ_T0043462.1 MGP_AJ_G0022549.1 mouse_genomes_project 16 14080616 14083562 + Ccdc74a protein_coding retained_intron MGP_AJ_T0043463.1 MGP_AJ_G0022549.1 mouse_genomes_project 16 14080621 14083388 + MGP_AJ_P0043463 Ccdc74a protein_coding nonsense_mediated_decay MGP_AJ_T0043464.1 MGP_AJ_G0022549.1 mouse_genomes_project 16 14080621 14084885 + MGP_AJ_P0043464 Ccdc74a protein_coding protein_coding MGP_AJ_T0043465.1 MGP_AJ_G0022549.1 mouse_genomes_project 16 14080697 14082620 + Ccdc74a protein_coding retained_intron MGP_AJ_T0043466.1 MGP_AJ_G0022549.1 mouse_genomes_project 16 14080710 14084884 + MGP_AJ_P0043466 Ccdc74a protein_coding protein_coding MGP_AJ_T0043467.1 MGP_AJ_G0022549.1 mouse_genomes_project 16 14080711 14084556 + MGP_AJ_P0043467 Ccdc74a protein_coding nonsense_mediated_decay MGP_AJ_T0043468.1 MGP_AJ_G0022549.1 mouse_genomes_project 16 14080759 14084885 + MGP_AJ_P0043468 Ccdc74a protein_coding protein_coding MGP_AJ_T0043469.1 MGP_AJ_G0022549.1 mouse_genomes_project 16 14080764 14084594 + MGP_AJ_P0043469 Ccdc74a protein_coding protein_coding MGP_AJ_T0043470.1 MGP_AJ_G0022549.1 mouse_genomes_project 16 14080819 14082008 + Ccdc74a protein_coding retained_intron MGP_AJ_T0043471.1 MGP_AJ_G0022549.1 mouse_genomes_project 16 14080846 14084885 + MGP_AJ_P0043471 Ccdc74a protein_coding nonsense_mediated_decay MGP_AJ_T0099635.1 MGP_AJ_G0037601.1 mouse_genomes_project 16 86121501 86121606 - Gm23655 snRNA snRNA MGP_AJ_T0000970.1 MGP_AJ_G0000902.1 mouse_genomes_project 16 74315050 74317074 + TEC TEC MGP_AJ_T0044227.1 MGP_AJ_G0022739.1 mouse_genomes_project 16 32629256 32658887 + MGP_AJ_P0044227 Parp9 protein_coding protein_coding MGP_AJ_T0044228.1 MGP_AJ_G0022739.1 mouse_genomes_project 16 32629274 32633978 + Parp9 protein_coding retained_intron MGP_AJ_T0044229.1 MGP_AJ_G0022739.1 mouse_genomes_project 16 32629305 32637845 + MGP_AJ_P0044229 Parp9 protein_coding nonsense_mediated_decay MGP_AJ_T0044230.1 MGP_AJ_G0022739.1 mouse_genomes_project 16 32629403 32663270 + MGP_AJ_P0044230 Parp9 protein_coding protein_coding MGP_AJ_T0044231.1 MGP_AJ_G0022739.1 mouse_genomes_project 16 32631206 32638080 + Parp9 protein_coding processed_transcript MGP_AJ_T0044232.1 MGP_AJ_G0022739.1 mouse_genomes_project 16 32638442 32647007 + MGP_AJ_P0044232 Parp9 protein_coding nonsense_mediated_decay MGP_AJ_T0003643.1 MGP_AJ_G0003295.1 mouse_genomes_project 16 254101 255663 - Gm15537 antisense antisense MGP_AJ_T0017528.1 MGP_AJ_G0015307.1 mouse_genomes_project 16 90065834 90081102 - 1810053B23Rik processed_transcript lincRNA MGP_AJ_T0017529.1 MGP_AJ_G0015307.1 mouse_genomes_project 16 90066279 90075762 - 1810053B23Rik processed_transcript lincRNA MGP_AJ_T0017530.1 MGP_AJ_G0015307.1 mouse_genomes_project 16 90066834 90076634 - 1810053B23Rik processed_transcript lincRNA MGP_AJ_T0017531.1 MGP_AJ_G0015307.1 mouse_genomes_project 16 90067302 90076644 - 1810053B23Rik processed_transcript lincRNA MGP_AJ_T0017532.1 MGP_AJ_G0015307.1 mouse_genomes_project 16 90068617 90081933 - 1810053B23Rik processed_transcript retained_intron MGP_AJ_T0017533.1 MGP_AJ_G0015307.1 mouse_genomes_project 16 90069356 90081901 - 1810053B23Rik processed_transcript retained_intron MGP_AJ_T0011417.1 MGP_AJ_G0009539.1 mouse_genomes_project 16 90396131 90396412 + Gm22344 misc_RNA misc_RNA MGP_AJ_T0006839.1 MGP_AJ_G0005634.1 mouse_genomes_project 16 18317747 18329526 + 1300002E11Rik lincRNA lincRNA MGP_AJ_T0006840.1 MGP_AJ_G0005634.1 mouse_genomes_project 16 18317762 18332408 + 1300002E11Rik lincRNA lincRNA MGP_AJ_T0006841.1 MGP_AJ_G0005634.1 mouse_genomes_project 16 18317792 18329526 + 1300002E11Rik lincRNA lincRNA MGP_AJ_T0043173.1 MGP_AJ_G0022490.1 mouse_genomes_project 16 8394656 8405932 + Shisa9 protein_coding processed_transcript MGP_AJ_T0043174.1 MGP_AJ_G0022490.1 mouse_genomes_project 16 8395124 8686220 + MGP_AJ_P0043174 Shisa9 protein_coding protein_coding MGP_AJ_T0043175.1 MGP_AJ_G0022490.1 mouse_genomes_project 16 8395124 8687173 + MGP_AJ_P0043175 Shisa9 protein_coding protein_coding MGP_AJ_T0043176.1 MGP_AJ_G0022490.1 mouse_genomes_project 16 8395221 8400626 + Shisa9 protein_coding processed_transcript MGP_AJ_T0044973.1 MGP_AJ_G0022964.1 mouse_genomes_project 16 85478500 85487766 + MGP_AJ_P0044973 Krtap15 protein_coding protein_coding MGP_AJ_T0044975.1 MGP_AJ_G0022964.1 mouse_genomes_project 16 85487275 85488126 + MGP_AJ_P0044975 Krtap15 protein_coding protein_coding MGP_AJ_T0042980.1 MGP_AJ_G0022437.1 mouse_genomes_project 16 1214322 1268663 + MGP_AJ_P0042980 Mgrn1 protein_coding protein_coding MGP_AJ_T0042981.1 MGP_AJ_G0022437.1 mouse_genomes_project 16 1214322 1268663 + MGP_AJ_P0042981 Mgrn1 protein_coding protein_coding MGP_AJ_T0042982.1 MGP_AJ_G0022437.1 mouse_genomes_project 16 1214608 1268671 + MGP_AJ_P0042982 Mgrn1 protein_coding unknown_likely_coding MGP_AJ_T0010151.1 MGP_AJ_G0008273.1 mouse_genomes_project 16 62162551 62162661 + Gm23659 miRNA miRNA MGP_AJ_T0013136.1 MGP_AJ_G0011231.1 mouse_genomes_project 16 13491606 13492299 - processed_pseudogene processed_pseudogene MGP_AJ_T0013163.1 MGP_AJ_G0011258.1 mouse_genomes_project 16 32899921 32916788 - processed_pseudogene processed_pseudogene MGP_AJ_T0000973.1 MGP_AJ_G0000905.1 mouse_genomes_project 16 74385372 74387505 + TEC TEC MGP_AJ_T0099603.1 MGP_AJ_G0037569.1 mouse_genomes_project 16 22300919 22301026 - Gm24928 snRNA snRNA MGP_AJ_T0044558.1 MGP_AJ_G0022819.1 mouse_genomes_project 16 42409058 42420752 + MGP_AJ_P0044558 Gcsam protein_coding protein_coding MGP_AJ_T0044559.1 MGP_AJ_G0022819.1 mouse_genomes_project 16 42409101 42422381 + MGP_AJ_P0044559 Gcsam protein_coding protein_coding MGP_AJ_T0100896.1 MGP_AJ_G0038862.1 mouse_genomes_project 16 68362580 68362711 + Gm22797 snoRNA snoRNA MGP_AJ_T0017490.1 MGP_AJ_G0015291.1 mouse_genomes_project 16 19747137 19797132 + B630019A10Rik processed_transcript processed_transcript MGP_AJ_T0102362.1 MGP_AJ_G0040104.1 mouse_genomes_project 16 38031499 38033545 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0011406.1 MGP_AJ_G0009528.1 mouse_genomes_project 16 19133063 19133255 + Gm22481 misc_RNA misc_RNA MGP_AJ_T0044274.1 MGP_AJ_G0022757.1 mouse_genomes_project 16 33434650 33465228 - MGP_AJ_P0044274 Slc15a2 protein_coding protein_coding MGP_AJ_T0044275.1 MGP_AJ_G0022757.1 mouse_genomes_project 16 33436250 33465086 - MGP_AJ_P0044275 Slc15a2 protein_coding protein_coding MGP_AJ_T0044276.1 MGP_AJ_G0022757.1 mouse_genomes_project 16 33436250 33465058 - MGP_AJ_P0044276 Slc15a2 protein_coding nonsense_mediated_decay MGP_AJ_T0044277.1 MGP_AJ_G0022757.1 mouse_genomes_project 16 33436788 33439231 - Slc15a2 protein_coding retained_intron MGP_AJ_T0044278.1 MGP_AJ_G0022757.1 mouse_genomes_project 16 33438930 33439880 - Slc15a2 protein_coding processed_transcript MGP_AJ_T0044279.1 MGP_AJ_G0022757.1 mouse_genomes_project 16 33440370 33441177 - Slc15a2 protein_coding retained_intron MGP_AJ_T0044280.1 MGP_AJ_G0022757.1 mouse_genomes_project 16 33441594 33447327 - Slc15a2 protein_coding retained_intron MGP_AJ_T0044281.1 MGP_AJ_G0022757.1 mouse_genomes_project 16 33441641 33447137 - Slc15a2 protein_coding retained_intron MGP_AJ_T0044282.1 MGP_AJ_G0022757.1 mouse_genomes_project 16 33445671 33447053 - Slc15a2 protein_coding retained_intron MGP_AJ_T0044283.1 MGP_AJ_G0022757.1 mouse_genomes_project 16 33450810 33465206 - MGP_AJ_P0044283 Slc15a2 protein_coding protein_coding MGP_AJ_T0044284.1 MGP_AJ_G0022757.1 mouse_genomes_project 16 33450813 33465190 - MGP_AJ_P0044284 Slc15a2 protein_coding protein_coding MGP_AJ_T0044285.1 MGP_AJ_G0022757.1 mouse_genomes_project 16 33451007 33452215 - Slc15a2 protein_coding retained_intron MGP_AJ_T0044286.1 MGP_AJ_G0022757.1 mouse_genomes_project 16 33461651 33462731 - Slc15a2 protein_coding retained_intron MGP_AJ_T0043042.1 MGP_AJ_G0022457.1 mouse_genomes_project 16 4988521 4992349 - MGP_AJ_P0043042 Tmem186 protein_coding protein_coding MGP_AJ_T0043729.1 MGP_AJ_G0022612.1 mouse_genomes_project 16 17126026 17138787 + MGP_AJ_P0043729 protein_coding protein_coding MGP_AJ_T0043730.1 MGP_AJ_G0022612.1 mouse_genomes_project 16 17126078 17138787 + MGP_AJ_P0043730 protein_coding nonsense_mediated_decay MGP_AJ_T0043731.1 MGP_AJ_G0022612.1 mouse_genomes_project 16 17126090 17127129 + protein_coding processed_transcript MGP_AJ_T0043732.1 MGP_AJ_G0022612.1 mouse_genomes_project 16 17134470 17135180 + protein_coding processed_transcript MGP_AJ_T0043733.1 MGP_AJ_G0022612.1 mouse_genomes_project 16 17134815 17135832 + protein_coding processed_transcript MGP_AJ_T0043734.1 MGP_AJ_G0022612.1 mouse_genomes_project 16 17134882 17137573 + protein_coding processed_transcript MGP_AJ_T0003650.1 MGP_AJ_G0003301.1 mouse_genomes_project 16 9779897 9800411 - antisense antisense MGP_AJ_T0003651.1 MGP_AJ_G0003301.1 mouse_genomes_project 16 9792636 9800407 - antisense antisense MGP_AJ_T0006836.1 MGP_AJ_G0005631.1 mouse_genomes_project 16 13678341 13683677 - Gm26635 lincRNA lincRNA MGP_AJ_T0044322.1 MGP_AJ_G0022764.1 mouse_genomes_project 16 33793938 34059905 - MGP_AJ_P0044322 Stxbp5l protein_coding protein_coding MGP_AJ_T0044323.1 MGP_AJ_G0022764.1 mouse_genomes_project 16 33794264 34059905 - MGP_AJ_P0044323 Stxbp5l protein_coding protein_coding MGP_AJ_T0044324.1 MGP_AJ_G0022764.1 mouse_genomes_project 16 33794652 34059940 - MGP_AJ_P0044324 Stxbp5l protein_coding protein_coding MGP_AJ_T0044325.1 MGP_AJ_G0022764.1 mouse_genomes_project 16 33794652 34059944 - MGP_AJ_P0044325 Stxbp5l protein_coding protein_coding MGP_AJ_T0044326.1 MGP_AJ_G0022764.1 mouse_genomes_project 16 33813530 34059905 - MGP_AJ_P0044326 Stxbp5l protein_coding protein_coding MGP_AJ_T0044327.1 MGP_AJ_G0022764.1 mouse_genomes_project 16 33836215 33884547 - Stxbp5l protein_coding processed_transcript MGP_AJ_T0044328.1 MGP_AJ_G0022764.1 mouse_genomes_project 16 33893662 34059905 - MGP_AJ_P0044328 Stxbp5l protein_coding protein_coding MGP_AJ_T0044329.1 MGP_AJ_G0022764.1 mouse_genomes_project 16 33994625 34059905 - Stxbp5l protein_coding retained_intron MGP_AJ_T0044330.1 MGP_AJ_G0022764.1 mouse_genomes_project 16 34049123 34059940 - Stxbp5l protein_coding processed_transcript MGP_AJ_T0044331.1 MGP_AJ_G0022764.1 mouse_genomes_project 16 34057852 34059905 - Stxbp5l protein_coding retained_intron MGP_AJ_T0043735.1 MGP_AJ_G0022613.1 mouse_genomes_project 16 17143702 17156185 + MGP_AJ_P0043735 Eif4g1 protein_coding protein_coding MGP_AJ_T0043736.1 MGP_AJ_G0022613.1 mouse_genomes_project 16 17143704 17155715 + MGP_AJ_P0043736 Eif4g1 protein_coding protein_coding MGP_AJ_T0043737.1 MGP_AJ_G0022613.1 mouse_genomes_project 16 17149531 17169691 + MGP_AJ_P0043737 Eif4g1 protein_coding protein_coding MGP_AJ_T0043738.1 MGP_AJ_G0022613.1 mouse_genomes_project 16 17149554 17169690 + MGP_AJ_P0043738 Eif4g1 protein_coding protein_coding MGP_AJ_T0043739.1 MGP_AJ_G0022613.1 mouse_genomes_project 16 17149557 17169688 + MGP_AJ_P0043739 Eif4g1 protein_coding protein_coding MGP_AJ_T0043740.1 MGP_AJ_G0022613.1 mouse_genomes_project 16 17149557 17160742 + MGP_AJ_P0043740 Eif4g1 protein_coding protein_coding MGP_AJ_T0043741.1 MGP_AJ_G0022613.1 mouse_genomes_project 16 17149563 17169690 + MGP_AJ_P0043741 Eif4g1 protein_coding protein_coding MGP_AJ_T0043742.1 MGP_AJ_G0022613.1 mouse_genomes_project 16 17149578 17160748 + MGP_AJ_P0043742 Eif4g1 protein_coding protein_coding MGP_AJ_T0043743.1 MGP_AJ_G0022613.1 mouse_genomes_project 16 17149579 17160748 + MGP_AJ_P0043743 Eif4g1 protein_coding protein_coding MGP_AJ_T0043744.1 MGP_AJ_G0022613.1 mouse_genomes_project 16 17149631 17169691 + MGP_AJ_P0043744 Eif4g1 protein_coding protein_coding MGP_AJ_T0043745.1 MGP_AJ_G0022613.1 mouse_genomes_project 16 17149631 17156061 + MGP_AJ_P0043745 Eif4g1 protein_coding protein_coding MGP_AJ_T0043746.1 MGP_AJ_G0022613.1 mouse_genomes_project 16 17150103 17169691 + MGP_AJ_P0043746 Eif4g1 protein_coding nonsense_mediated_decay MGP_AJ_T0043747.1 MGP_AJ_G0022613.1 mouse_genomes_project 16 17150206 17154588 + MGP_AJ_P0043747 Eif4g1 protein_coding protein_coding MGP_AJ_T0043748.1 MGP_AJ_G0022613.1 mouse_genomes_project 16 17150228 17169690 + MGP_AJ_P0043748 Eif4g1 protein_coding protein_coding MGP_AJ_T0043749.1 MGP_AJ_G0022613.1 mouse_genomes_project 16 17150247 17155453 + MGP_AJ_P0043749 Eif4g1 protein_coding protein_coding MGP_AJ_T0043750.1 MGP_AJ_G0022613.1 mouse_genomes_project 16 17150325 17169688 + MGP_AJ_P0043750 Eif4g1 protein_coding protein_coding MGP_AJ_T0043751.1 MGP_AJ_G0022613.1 mouse_genomes_project 16 17150622 17155449 + MGP_AJ_P0043751 Eif4g1 protein_coding protein_coding MGP_AJ_T0043752.1 MGP_AJ_G0022613.1 mouse_genomes_project 16 17150919 17155464 + MGP_AJ_P0043752 Eif4g1 protein_coding protein_coding MGP_AJ_T0043753.1 MGP_AJ_G0022613.1 mouse_genomes_project 16 17155065 17169688 + Eif4g1 protein_coding retained_intron MGP_AJ_T0043754.1 MGP_AJ_G0022613.1 mouse_genomes_project 16 17155195 17156375 + Eif4g1 protein_coding processed_transcript MGP_AJ_T0043755.1 MGP_AJ_G0022613.1 mouse_genomes_project 16 17157945 17158640 + Eif4g1 protein_coding retained_intron MGP_AJ_T0043756.1 MGP_AJ_G0022613.1 mouse_genomes_project 16 17165812 17166496 + Eif4g1 protein_coding retained_intron MGP_AJ_T0006858.1 MGP_AJ_G0005651.1 mouse_genomes_project 16 45979776 46026778 - 1700026J12Rik lincRNA lincRNA MGP_AJ_T0006859.1 MGP_AJ_G0005651.1 mouse_genomes_project 16 45979803 46026778 - 1700026J12Rik lincRNA lincRNA MGP_AJ_T0013164.1 MGP_AJ_G0011259.1 mouse_genomes_project 16 32927731 32928194 + processed_pseudogene processed_pseudogene MGP_AJ_T0006883.1 MGP_AJ_G0005666.1 mouse_genomes_project 16 87413939 87415591 + Gm17518 lincRNA lincRNA MGP_AJ_T0043387.1 MGP_AJ_G0022538.1 mouse_genomes_project 16 13703067 13832422 - MGP_AJ_P0043387 Pi4ka protein_coding protein_coding MGP_AJ_T0043388.1 MGP_AJ_G0022538.1 mouse_genomes_project 16 13703068 13704359 - Pi4ka protein_coding retained_intron MGP_AJ_T0043389.1 MGP_AJ_G0022538.1 mouse_genomes_project 16 13703068 13707677 - Pi4ka protein_coding retained_intron MGP_AJ_T0043390.1 MGP_AJ_G0022538.1 mouse_genomes_project 16 13703068 13733428 - MGP_AJ_P0043390 Pi4ka protein_coding protein_coding MGP_AJ_T0043391.1 MGP_AJ_G0022538.1 mouse_genomes_project 16 13703068 13832001 - MGP_AJ_P0043391 Pi4ka protein_coding protein_coding MGP_AJ_T0043392.1 MGP_AJ_G0022538.1 mouse_genomes_project 16 13703069 13704789 - Pi4ka protein_coding retained_intron MGP_AJ_T0043393.1 MGP_AJ_G0022538.1 mouse_genomes_project 16 13705535 13706839 - Pi4ka protein_coding retained_intron MGP_AJ_T0043394.1 MGP_AJ_G0022538.1 mouse_genomes_project 16 13722904 13733051 - MGP_AJ_P0043394 Pi4ka protein_coding nonsense_mediated_decay MGP_AJ_T0043395.1 MGP_AJ_G0022538.1 mouse_genomes_project 16 13733539 13750868 - MGP_AJ_P0043395 Pi4ka protein_coding nonsense_mediated_decay MGP_AJ_T0043396.1 MGP_AJ_G0022538.1 mouse_genomes_project 16 13737857 13776246 - MGP_AJ_P0043396 Pi4ka protein_coding protein_coding MGP_AJ_T0043397.1 MGP_AJ_G0022538.1 mouse_genomes_project 16 13748350 13776208 - Pi4ka protein_coding retained_intron MGP_AJ_T0043400.1 MGP_AJ_G0022538.1 mouse_genomes_project 16 13789979 13832001 - Pi4ka protein_coding retained_intron MGP_AJ_T0045380.1 MGP_AJ_G0023065.1 mouse_genomes_project 16 94773574 94774067 + protein_coding retained_intron MGP_AJ_T0044311.1 MGP_AJ_G0022762.1 mouse_genomes_project 16 33644174 33669443 - MGP_AJ_P0044311 Fbxo40 protein_coding protein_coding MGP_AJ_T0044312.1 MGP_AJ_G0022762.1 mouse_genomes_project 16 33646645 33655221 - Fbxo40 protein_coding processed_transcript MGP_AJ_T0044313.1 MGP_AJ_G0022762.1 mouse_genomes_project 16 33646754 33651484 - Fbxo40 protein_coding retained_intron MGP_AJ_T0044314.1 MGP_AJ_G0022762.1 mouse_genomes_project 16 33646787 33655581 - MGP_AJ_P0044314 Fbxo40 protein_coding protein_coding MGP_AJ_T0043189.1 MGP_AJ_G0022495.1 mouse_genomes_project 16 10070313 10076790 + MGP_AJ_P0043189 3110001I22Rik protein_coding protein_coding MGP_AJ_T0013173.1 MGP_AJ_G0011268.1 mouse_genomes_project 16 39968830 39969986 + processed_pseudogene processed_pseudogene MGP_AJ_T0010140.1 MGP_AJ_G0008262.1 mouse_genomes_project 16 40432198 40432281 + Mir568 miRNA miRNA MGP_AJ_T0006873.1 MGP_AJ_G0005660.1 mouse_genomes_project 16 66543043 66547272 - Gm43265 lincRNA lincRNA MGP_AJ_T0010163.1 MGP_AJ_G0008285.1 mouse_genomes_project 16 89787853 89787921 + Gm28003 miRNA miRNA MGP_AJ_T0044266.1 MGP_AJ_G0022755.1 mouse_genomes_project 16 33284805 33349251 - MGP_AJ_P0044266 Cd86 protein_coding protein_coding MGP_AJ_T0044267.1 MGP_AJ_G0022755.1 mouse_genomes_project 16 33284833 33285456 - Cd86 protein_coding processed_transcript MGP_AJ_T0044268.1 MGP_AJ_G0022755.1 mouse_genomes_project 16 33302397 33324470 - MGP_AJ_P0044268 Cd86 protein_coding protein_coding MGP_AJ_T0044269.1 MGP_AJ_G0022755.1 mouse_genomes_project 16 33343950 33349255 - Cd86 protein_coding processed_transcript MGP_AJ_T0003658.1 MGP_AJ_G0003308.1 mouse_genomes_project 16 15517341 15576354 + antisense antisense MGP_AJ_T0043087.1 MGP_AJ_G0022469.1 mouse_genomes_project 16 6820879 6847652 - MGP_AJ_P0043087 Tvp23a protein_coding protein_coding MGP_AJ_T0043089.1 MGP_AJ_G0022469.1 mouse_genomes_project 16 6823566 6847435 - MGP_AJ_P0043089 Tvp23a protein_coding nonsense_mediated_decay MGP_AJ_T0043090.1 MGP_AJ_G0022469.1 mouse_genomes_project 16 6824533 6847617 - Tvp23a protein_coding processed_transcript MGP_AJ_T0043091.1 MGP_AJ_G0022469.1 mouse_genomes_project 16 6826186 6829496 - Tvp23a protein_coding processed_transcript MGP_AJ_T0043092.1 MGP_AJ_G0022469.1 mouse_genomes_project 16 6827362 6829572 - Tvp23a protein_coding processed_transcript MGP_AJ_T0044812.1 MGP_AJ_G0022904.1 mouse_genomes_project 16 59580190 59589836 + MGP_AJ_P0044812 Stx19 protein_coding protein_coding MGP_AJ_T0043896.1 MGP_AJ_G0022654.1 mouse_genomes_project 16 22560678 22705145 - MGP_AJ_P0043896 P3h2 protein_coding protein_coding MGP_AJ_T0043897.1 MGP_AJ_G0022654.1 mouse_genomes_project 16 22573617 22586234 - P3h2 protein_coding retained_intron MGP_AJ_T0043898.1 MGP_AJ_G0022654.1 mouse_genomes_project 16 22586563 22593851 - P3h2 protein_coding processed_transcript MGP_AJ_T0043899.1 MGP_AJ_G0022654.1 mouse_genomes_project 16 22598220 22615365 - P3h2 protein_coding processed_transcript MGP_AJ_T0044686.1 MGP_AJ_G0022855.1 mouse_genomes_project 16 52938404 53006160 + MGP_AJ_P0044686 Impg2 protein_coding protein_coding MGP_AJ_T0044687.1 MGP_AJ_G0022855.1 mouse_genomes_project 16 52938423 52947767 + Impg2 protein_coding processed_transcript MGP_AJ_T0044688.1 MGP_AJ_G0022855.1 mouse_genomes_project 16 52938429 53008756 + MGP_AJ_P0044688 Impg2 protein_coding protein_coding MGP_AJ_T0044689.1 MGP_AJ_G0022855.1 mouse_genomes_project 16 53005189 53006040 + Impg2 protein_coding processed_transcript MGP_AJ_T0044740.1 MGP_AJ_G0022870.1 mouse_genomes_project 16 55326677 55329971 - MGP_AJ_P0044740 Gm813 protein_coding protein_coding MGP_AJ_T0044984.1 MGP_AJ_G0022973.1 mouse_genomes_project 16 85668897 85669277 - MGP_AJ_P0044984 Krtap22-2 protein_coding protein_coding MGP_AJ_T0045296.1 MGP_AJ_G0023045.1 mouse_genomes_project 16 92437175 92455871 + MGP_AJ_P0045296 Ets2 protein_coding protein_coding MGP_AJ_T0045297.1 MGP_AJ_G0023045.1 mouse_genomes_project 16 92437555 92445249 + Ets2 protein_coding retained_intron MGP_AJ_T0045298.1 MGP_AJ_G0023045.1 mouse_genomes_project 16 92437600 92447649 + Ets2 protein_coding retained_intron MGP_AJ_T0045299.1 MGP_AJ_G0023045.1 mouse_genomes_project 16 92441247 92450892 + MGP_AJ_P0045299 Ets2 protein_coding protein_coding MGP_AJ_T0045300.1 MGP_AJ_G0023045.1 mouse_genomes_project 16 92450673 92453942 + Ets2 protein_coding retained_intron MGP_AJ_T0044058.1 MGP_AJ_G0022698.1 mouse_genomes_project 16 28870075 28880029 + Wdr53 protein_coding processed_transcript MGP_AJ_T0044059.1 MGP_AJ_G0022698.1 mouse_genomes_project 16 28870075 28880350 + MGP_AJ_P0044059 Wdr53 protein_coding protein_coding MGP_AJ_T0044060.1 MGP_AJ_G0022698.1 mouse_genomes_project 16 28870101 28880359 + MGP_AJ_P0044060 Wdr53 protein_coding protein_coding MGP_AJ_T0044061.1 MGP_AJ_G0022698.1 mouse_genomes_project 16 28870249 28875439 + Wdr53 protein_coding retained_intron MGP_AJ_T0100882.1 MGP_AJ_G0038848.1 mouse_genomes_project 16 40629609 40629738 - Gm26074 snoRNA snoRNA MGP_AJ_T0045035.1 MGP_AJ_G0022998.1 mouse_genomes_project 16 87514060 87516955 + Eva1c protein_coding processed_transcript MGP_AJ_T0045036.1 MGP_AJ_G0022998.1 mouse_genomes_project 16 87514060 87593935 + MGP_AJ_P0045036 Eva1c protein_coding protein_coding MGP_AJ_T0045037.1 MGP_AJ_G0022998.1 mouse_genomes_project 16 87518154 87594349 + MGP_AJ_P0045037 Eva1c protein_coding nonsense_mediated_decay MGP_AJ_T0045038.1 MGP_AJ_G0022998.1 mouse_genomes_project 16 87518213 87593893 + MGP_AJ_P0045038 Eva1c protein_coding nonsense_mediated_decay MGP_AJ_T0045039.1 MGP_AJ_G0022998.1 mouse_genomes_project 16 87518459 87593935 + MGP_AJ_P0045039 Eva1c protein_coding protein_coding MGP_AJ_T0045040.1 MGP_AJ_G0022998.1 mouse_genomes_project 16 87518459 87593935 + MGP_AJ_P0045040 Eva1c protein_coding protein_coding MGP_AJ_T0045041.1 MGP_AJ_G0022998.1 mouse_genomes_project 16 87533757 87579622 + MGP_AJ_P0045041 Eva1c protein_coding protein_coding MGP_AJ_T0099608.1 MGP_AJ_G0037574.1 mouse_genomes_project 16 32860516 32860623 - Gm22885 snRNA snRNA MGP_AJ_T0100904.1 MGP_AJ_G0038870.1 mouse_genomes_project 16 81865097 81865250 + Gm27295 snoRNA snoRNA MGP_AJ_T0044621.1 MGP_AJ_G0022840.1 mouse_genomes_project 16 46440326 46506214 + MGP_AJ_P0044621 Ift57 protein_coding protein_coding MGP_AJ_T0044622.1 MGP_AJ_G0022840.1 mouse_genomes_project 16 46440397 46503716 + MGP_AJ_P0044622 Ift57 protein_coding protein_coding MGP_AJ_T0044623.1 MGP_AJ_G0022840.1 mouse_genomes_project 16 46440448 46452961 + Ift57 protein_coding processed_transcript MGP_AJ_T0044624.1 MGP_AJ_G0022840.1 mouse_genomes_project 16 46452015 46505204 + MGP_AJ_P0044624 Ift57 protein_coding protein_coding MGP_AJ_T0098411.1 MGP_AJ_G0036395.1 mouse_genomes_project 16 46660987 46662697 + pseudogene pseudogene MGP_AJ_T0044584.1 MGP_AJ_G0022826.1 mouse_genomes_project 16 42845177 42929924 - MGP_AJ_P0044584 Cd96 protein_coding protein_coding MGP_AJ_T0044270.1 MGP_AJ_G0022756.1 mouse_genomes_project 16 33377329 33411244 + MGP_AJ_P0044270 Ildr1 protein_coding protein_coding MGP_AJ_T0044271.1 MGP_AJ_G0022756.1 mouse_genomes_project 16 33377381 33401906 + Ildr1 protein_coding retained_intron MGP_AJ_T0044272.1 MGP_AJ_G0022756.1 mouse_genomes_project 16 33377508 33410055 + MGP_AJ_P0044272 Ildr1 protein_coding protein_coding MGP_AJ_T0044273.1 MGP_AJ_G0022756.1 mouse_genomes_project 16 33400038 33406757 + Ildr1 protein_coding retained_intron MGP_AJ_T0013179.1 MGP_AJ_G0011274.1 mouse_genomes_project 16 43867155 43869616 + processed_pseudogene processed_pseudogene MGP_AJ_T0044983.1 MGP_AJ_G0022972.1 mouse_genomes_project 16 85621279 85621880 - MGP_AJ_P0044983 Krtap16-3 protein_coding protein_coding MGP_AJ_T0043679.1 MGP_AJ_G0022604.1 mouse_genomes_project 16 16972900 16984747 + MGP_AJ_P0043679 Eif2b5 protein_coding protein_coding MGP_AJ_T0043680.1 MGP_AJ_G0022604.1 mouse_genomes_project 16 16972997 16983812 + MGP_AJ_P0043680 Eif2b5 protein_coding unknown_likely_coding MGP_AJ_T0043681.1 MGP_AJ_G0022604.1 mouse_genomes_project 16 16981198 16984115 + MGP_AJ_P0043681 Eif2b5 protein_coding protein_coding MGP_AJ_T0043172.1 MGP_AJ_G0022489.1 mouse_genomes_project 16 8312274 8341510 + MGP_AJ_P0043172 Gm9961 protein_coding protein_coding MGP_AJ_T0102361.1 MGP_AJ_G0040103.1 mouse_genomes_project 16 37984484 37985470 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0044598.1 MGP_AJ_G0022830.1 mouse_genomes_project 16 45212216 45406962 + MGP_AJ_P0044598 Morc1 protein_coding protein_coding MGP_AJ_T0043008.1 MGP_AJ_G0022446.1 mouse_genomes_project 16 1421867 1471908 - MGP_AJ_P0043008 Ppl protein_coding protein_coding MGP_AJ_T0044764.1 MGP_AJ_G0022881.1 mouse_genomes_project 16 55732195 55737421 + MGP_AJ_P0044764 Olfr183 protein_coding protein_coding MGP_AJ_T0044765.1 MGP_AJ_G0022881.1 mouse_genomes_project 16 55732214 55736957 + MGP_AJ_P0044765 Olfr183 protein_coding protein_coding MGP_AJ_T0013124.1 MGP_AJ_G0011219.1 mouse_genomes_project 16 7599948 7600915 - processed_pseudogene processed_pseudogene MGP_AJ_T0000953.1 MGP_AJ_G0000886.1 mouse_genomes_project 16 20573672 20575552 + TEC TEC MGP_AJ_T0043643.1 MGP_AJ_G0022597.1 mouse_genomes_project 16 16417797 16454656 - MGP_AJ_P0043643 Klhl6 protein_coding protein_coding MGP_AJ_T0043644.1 MGP_AJ_G0022597.1 mouse_genomes_project 16 16428311 16437731 - Klhl6 protein_coding retained_intron MGP_AJ_T0043645.1 MGP_AJ_G0022597.1 mouse_genomes_project 16 16428331 16454626 - MGP_AJ_P0043645 Klhl6 protein_coding nonsense_mediated_decay MGP_AJ_T0043646.1 MGP_AJ_G0022597.1 mouse_genomes_project 16 16437455 16454549 - MGP_AJ_P0043646 Klhl6 protein_coding nonsense_mediated_decay MGP_AJ_T0010117.1 MGP_AJ_G0008239.1 mouse_genomes_project 16 13538627 13538724 - Mir301b miRNA miRNA MGP_AJ_T0044401.1 MGP_AJ_G0022786.1 mouse_genomes_project 16 35438117 35465690 + MGP_AJ_P0044401 B4galt4 protein_coding nonsense_mediated_decay MGP_AJ_T0044402.1 MGP_AJ_G0022786.1 mouse_genomes_project 16 35448950 35464872 + MGP_AJ_P0044402 B4galt4 protein_coding protein_coding MGP_AJ_T0044403.1 MGP_AJ_G0022786.1 mouse_genomes_project 16 35457653 35465153 + MGP_AJ_P0044403 B4galt4 protein_coding protein_coding MGP_AJ_T0044404.1 MGP_AJ_G0022786.1 mouse_genomes_project 16 35459734 35463120 + B4galt4 protein_coding retained_intron MGP_AJ_T0044796.1 MGP_AJ_G0022900.1 mouse_genomes_project 16 56411113 56437837 - MGP_AJ_P0044796 Arl6 protein_coding protein_coding MGP_AJ_T0044797.1 MGP_AJ_G0022900.1 mouse_genomes_project 16 56411492 56438061 - MGP_AJ_P0044797 Arl6 protein_coding protein_coding MGP_AJ_T0044798.1 MGP_AJ_G0022900.1 mouse_genomes_project 16 56411769 56431173 - MGP_AJ_P0044798 Arl6 protein_coding protein_coding MGP_AJ_T0044799.1 MGP_AJ_G0022900.1 mouse_genomes_project 16 56419346 56437799 - MGP_AJ_P0044799 Arl6 protein_coding protein_coding MGP_AJ_T0000947.1 MGP_AJ_G0000881.1 mouse_genomes_project 16 230372 230740 - TEC TEC MGP_AJ_T0000948.1 MGP_AJ_G0000881.1 mouse_genomes_project 16 230404 230740 - TEC TEC MGP_AJ_T0011413.1 MGP_AJ_G0009535.1 mouse_genomes_project 16 62683080 62683393 + Gm22217 misc_RNA misc_RNA MGP_AJ_T0013155.1 MGP_AJ_G0011250.1 mouse_genomes_project 16 25876580 25876974 - processed_pseudogene processed_pseudogene MGP_AJ_T0044961.1 MGP_AJ_G0022952.1 mouse_genomes_project 16 85220369 85222725 - MGP_AJ_P0044961 Cldn8 protein_coding protein_coding MGP_AJ_T0045305.1 MGP_AJ_G0023047.1 mouse_genomes_project 16 92721210 92817612 - MGP_AJ_P0045305 Brwd1 protein_coding protein_coding MGP_AJ_T0045306.1 MGP_AJ_G0023047.1 mouse_genomes_project 16 92721567 92817631 - MGP_AJ_P0045306 Brwd1 protein_coding protein_coding MGP_AJ_T0045307.1 MGP_AJ_G0023047.1 mouse_genomes_project 16 92728388 92817631 - MGP_AJ_P0045307 Brwd1 protein_coding protein_coding MGP_AJ_T0045308.1 MGP_AJ_G0023047.1 mouse_genomes_project 16 92731312 92801431 - MGP_AJ_P0045308 Brwd1 protein_coding unknown_likely_coding MGP_AJ_T0045309.1 MGP_AJ_G0023047.1 mouse_genomes_project 16 92731558 92817631 - MGP_AJ_P0045309 Brwd1 protein_coding protein_coding MGP_AJ_T0045310.1 MGP_AJ_G0023047.1 mouse_genomes_project 16 92733802 92782012 - MGP_AJ_P0045310 Brwd1 protein_coding nonsense_mediated_decay MGP_AJ_T0045311.1 MGP_AJ_G0023047.1 mouse_genomes_project 16 92734606 92736802 - Brwd1 protein_coding retained_intron MGP_AJ_T0045312.1 MGP_AJ_G0023047.1 mouse_genomes_project 16 92742170 92762415 - MGP_AJ_P0045312 Brwd1 protein_coding protein_coding MGP_AJ_T0045313.1 MGP_AJ_G0023047.1 mouse_genomes_project 16 92751153 92752851 - Brwd1 protein_coding retained_intron MGP_AJ_T0045314.1 MGP_AJ_G0023047.1 mouse_genomes_project 16 92754464 92754917 - Brwd1 protein_coding retained_intron MGP_AJ_T0045315.1 MGP_AJ_G0023047.1 mouse_genomes_project 16 92768053 92770639 - Brwd1 protein_coding retained_intron MGP_AJ_T0045316.1 MGP_AJ_G0023047.1 mouse_genomes_project 16 92770870 92795912 - MGP_AJ_P0045316 Brwd1 protein_coding protein_coding MGP_AJ_T0045317.1 MGP_AJ_G0023047.1 mouse_genomes_project 16 92770994 92795877 - MGP_AJ_P0045317 Brwd1 protein_coding nonsense_mediated_decay MGP_AJ_T0045318.1 MGP_AJ_G0023047.1 mouse_genomes_project 16 92781073 92782295 - Brwd1 protein_coding retained_intron MGP_AJ_T0045319.1 MGP_AJ_G0023047.1 mouse_genomes_project 16 92801476 92817710 - MGP_AJ_P0045319 Brwd1 protein_coding protein_coding MGP_AJ_T0000974.1 MGP_AJ_G0000906.1 mouse_genomes_project 16 76335415 76336015 + TEC TEC MGP_AJ_T0017494.1 MGP_AJ_G0015293.1 mouse_genomes_project 16 29651019 29786165 - Gm17106 processed_transcript processed_transcript MGP_AJ_T0100860.1 MGP_AJ_G0038826.1 mouse_genomes_project 16 4827099 4827181 - Gm23706 snoRNA snoRNA MGP_AJ_T0044169.1 MGP_AJ_G0022723.1 mouse_genomes_project 16 30481280 30506789 + MGP_AJ_P0044169 Muc13 protein_coding protein_coding MGP_AJ_T0044170.1 MGP_AJ_G0022723.1 mouse_genomes_project 16 30481610 30506796 + MGP_AJ_P0044170 Muc13 protein_coding protein_coding MGP_AJ_T0044785.1 MGP_AJ_G0022897.1 mouse_genomes_project 16 56206645 56261157 + MGP_AJ_P0044785 Gabrr3 protein_coding protein_coding MGP_AJ_T0044514.1 MGP_AJ_G0022811.1 mouse_genomes_project 16 41759193 41780128 + MGP_AJ_P0044514 Cd200r3 protein_coding protein_coding MGP_AJ_T0044515.1 MGP_AJ_G0022811.1 mouse_genomes_project 16 41759193 41780814 + MGP_AJ_P0044515 Cd200r3 protein_coding protein_coding MGP_AJ_T0044516.1 MGP_AJ_G0022811.1 mouse_genomes_project 16 41759193 41780814 + MGP_AJ_P0044516 Cd200r3 protein_coding protein_coding MGP_AJ_T0044517.1 MGP_AJ_G0022811.1 mouse_genomes_project 16 41759193 41781521 + MGP_AJ_P0044517 Cd200r3 protein_coding protein_coding MGP_AJ_T0044518.1 MGP_AJ_G0022811.1 mouse_genomes_project 16 41759193 41780128 + MGP_AJ_P0044518 Cd200r3 protein_coding protein_coding MGP_AJ_T0044519.1 MGP_AJ_G0022811.1 mouse_genomes_project 16 41759207 41796716 + MGP_AJ_P0044519 Cd200r3 protein_coding protein_coding MGP_AJ_T0044520.1 MGP_AJ_G0022811.1 mouse_genomes_project 16 41759221 41796688 + MGP_AJ_P0044520 Cd200r3 protein_coding protein_coding MGP_AJ_T0044521.1 MGP_AJ_G0022811.1 mouse_genomes_project 16 41759257 41781736 + MGP_AJ_P0044521 Cd200r3 protein_coding protein_coding MGP_AJ_T0044522.1 MGP_AJ_G0022811.1 mouse_genomes_project 16 41759264 41776313 + MGP_AJ_P0044522 Cd200r3 protein_coding protein_coding MGP_AJ_T0044523.1 MGP_AJ_G0022811.1 mouse_genomes_project 16 41780699 41782300 + Cd200r3 protein_coding retained_intron MGP_AJ_T0044505.1 MGP_AJ_G0022807.1 mouse_genomes_project 16 41554929 41564505 - MGP_AJ_P0044505 Gtpbp8 protein_coding protein_coding MGP_AJ_T0044506.1 MGP_AJ_G0022807.1 mouse_genomes_project 16 41557303 41564501 - MGP_AJ_P0044506 Gtpbp8 protein_coding protein_coding MGP_AJ_T0044507.1 MGP_AJ_G0022807.1 mouse_genomes_project 16 41557426 41564425 - MGP_AJ_P0044507 Gtpbp8 protein_coding protein_coding MGP_AJ_T0044508.1 MGP_AJ_G0022807.1 mouse_genomes_project 16 41561949 41564451 - MGP_AJ_P0044508 Gtpbp8 protein_coding nonsense_mediated_decay MGP_AJ_T0043484.1 MGP_AJ_G0022554.1 mouse_genomes_project 16 14270553 14327357 - MGP_AJ_P0043484 Gm20518 protein_coding nonsense_mediated_decay MGP_AJ_T0098605.1 MGP_AJ_G0036589.1 mouse_genomes_project 16 10376258 10376368 - Gm26213 rRNA rRNA MGP_AJ_T0043652.1 MGP_AJ_G0022601.1 mouse_genomes_project 16 16754086 16776607 - MGP_AJ_P0043652 Parl protein_coding nonsense_mediated_decay MGP_AJ_T0043653.1 MGP_AJ_G0022601.1 mouse_genomes_project 16 16754086 16776649 - MGP_AJ_P0043653 Parl protein_coding protein_coding MGP_AJ_T0043654.1 MGP_AJ_G0022601.1 mouse_genomes_project 16 16754269 16757513 - Parl protein_coding retained_intron MGP_AJ_T0043655.1 MGP_AJ_G0022601.1 mouse_genomes_project 16 16757011 16776602 - Parl protein_coding retained_intron MGP_AJ_T0043656.1 MGP_AJ_G0022601.1 mouse_genomes_project 16 16759796 16762502 - Parl protein_coding retained_intron MGP_AJ_T0043657.1 MGP_AJ_G0022601.1 mouse_genomes_project 16 16761191 16775591 - Parl protein_coding processed_transcript MGP_AJ_T0043658.1 MGP_AJ_G0022601.1 mouse_genomes_project 16 16761217 16776616 - MGP_AJ_P0043658 Parl protein_coding nonsense_mediated_decay MGP_AJ_T0043659.1 MGP_AJ_G0022601.1 mouse_genomes_project 16 16767181 16772427 - Parl protein_coding retained_intron MGP_AJ_T0043660.1 MGP_AJ_G0022601.1 mouse_genomes_project 16 16771858 16776075 - Parl protein_coding processed_transcript MGP_AJ_T0043661.1 MGP_AJ_G0022601.1 mouse_genomes_project 16 16772385 16776623 - Parl protein_coding retained_intron MGP_AJ_T0043956.1 MGP_AJ_G0022673.1 mouse_genomes_project 16 26863526 26877479 - MGP_AJ_P0043956 Lrrc15 protein_coding protein_coding MGP_AJ_T0013182.1 MGP_AJ_G0011277.1 mouse_genomes_project 16 46857282 46859519 + processed_pseudogene processed_pseudogene MGP_AJ_T0044690.1 MGP_AJ_G0022856.1 mouse_genomes_project 16 53201960 53420854 + MGP_AJ_P0044690 Abi3bp protein_coding protein_coding MGP_AJ_T0044691.1 MGP_AJ_G0022856.1 mouse_genomes_project 16 53201960 53420854 + MGP_AJ_P0044691 Abi3bp protein_coding protein_coding MGP_AJ_T0044692.1 MGP_AJ_G0022856.1 mouse_genomes_project 16 53201960 53420854 + MGP_AJ_P0044692 Abi3bp protein_coding protein_coding MGP_AJ_T0044693.1 MGP_AJ_G0022856.1 mouse_genomes_project 16 53201960 53420854 + MGP_AJ_P0044693 Abi3bp protein_coding protein_coding MGP_AJ_T0044694.1 MGP_AJ_G0022856.1 mouse_genomes_project 16 53202028 53420864 + MGP_AJ_P0044694 Abi3bp protein_coding unknown_likely_coding MGP_AJ_T0045287.1 MGP_AJ_G0023044.1 mouse_genomes_project 16 92092846 92260819 - MGP_AJ_P0045287 Erg protein_coding protein_coding MGP_AJ_T0045288.1 MGP_AJ_G0023044.1 mouse_genomes_project 16 92092850 92193574 - MGP_AJ_P0045288 Erg protein_coding protein_coding MGP_AJ_T0045289.1 MGP_AJ_G0023044.1 mouse_genomes_project 16 92093887 92260819 - MGP_AJ_P0045289 Erg protein_coding protein_coding MGP_AJ_T0045290.1 MGP_AJ_G0023044.1 mouse_genomes_project 16 92093887 92320905 - MGP_AJ_P0045290 Erg protein_coding protein_coding MGP_AJ_T0045291.1 MGP_AJ_G0023044.1 mouse_genomes_project 16 92094019 92193619 - MGP_AJ_P0045291 Erg protein_coding protein_coding MGP_AJ_T0045292.1 MGP_AJ_G0023044.1 mouse_genomes_project 16 92094322 92254649 - MGP_AJ_P0045292 Erg protein_coding protein_coding MGP_AJ_T0045293.1 MGP_AJ_G0023044.1 mouse_genomes_project 16 92094483 92193516 - MGP_AJ_P0045293 Erg protein_coding protein_coding MGP_AJ_T0045294.1 MGP_AJ_G0023044.1 mouse_genomes_project 16 92094483 92193516 - MGP_AJ_P0045294 Erg protein_coding protein_coding MGP_AJ_T0045295.1 MGP_AJ_G0023044.1 mouse_genomes_project 16 92094483 92260777 - MGP_AJ_P0045295 Erg protein_coding protein_coding MGP_AJ_T0044980.1 MGP_AJ_G0022969.1 mouse_genomes_project 16 85555423 85555906 - MGP_AJ_P0044980 Krtap19-5 protein_coding protein_coding MGP_AJ_T0044755.1 MGP_AJ_G0022878.1 mouse_genomes_project 16 55627716 55628676 - MGP_AJ_P0044755 Olfr178 protein_coding protein_coding MGP_AJ_T0044756.1 MGP_AJ_G0022878.1 mouse_genomes_project 16 55627716 55630517 - MGP_AJ_P0044756 Olfr178 protein_coding protein_coding MGP_AJ_T0043398.1 MGP_AJ_G0022539.1 mouse_genomes_project 16 13756794 13768989 + MGP_AJ_P0043398 Serpind1 protein_coding protein_coding MGP_AJ_T0043399.1 MGP_AJ_G0022539.1 mouse_genomes_project 16 13756806 13768988 + MGP_AJ_P0043399 Serpind1 protein_coding protein_coding MGP_AJ_T0042895.1 MGP_AJ_G0022420.1 mouse_genomes_project 16 342745 343112 - MGP_AJ_P0042895 Gm10076 protein_coding protein_coding MGP_AJ_T0045260.1 MGP_AJ_G0023040.1 mouse_genomes_project 16 91234719 91265108 - MGP_AJ_P0045260 Dscr3 protein_coding protein_coding MGP_AJ_T0045261.1 MGP_AJ_G0023040.1 mouse_genomes_project 16 91239000 91249171 - Dscr3 protein_coding processed_transcript MGP_AJ_T0045262.1 MGP_AJ_G0023040.1 mouse_genomes_project 16 91241080 91264710 - Dscr3 protein_coding retained_intron MGP_AJ_T0045263.1 MGP_AJ_G0023040.1 mouse_genomes_project 16 91248443 91264719 - Dscr3 protein_coding retained_intron MGP_AJ_T0045264.1 MGP_AJ_G0023040.1 mouse_genomes_project 16 91250137 91264695 - Dscr3 protein_coding retained_intron MGP_AJ_T0045364.1 MGP_AJ_G0023061.1 mouse_genomes_project 16 94513991 94535733 - MGP_AJ_P0045364 Ripk4 protein_coding protein_coding MGP_AJ_T0044967.1 MGP_AJ_G0022958.1 mouse_genomes_project 16 85390241 85390989 + MGP_AJ_P0044967 Krtap13-1 protein_coding protein_coding MGP_AJ_T0042987.1 MGP_AJ_G0022442.1 mouse_genomes_project 16 1341703 1342722 + MGP_AJ_P0042987 Smim22 protein_coding protein_coding MGP_AJ_T0042988.1 MGP_AJ_G0022442.1 mouse_genomes_project 16 1341731 1342458 + Smim22 protein_coding retained_intron MGP_AJ_T0042989.1 MGP_AJ_G0022442.1 mouse_genomes_project 16 1341752 1342725 + MGP_AJ_P0042989 Smim22 protein_coding protein_coding MGP_AJ_T0042990.1 MGP_AJ_G0022442.1 mouse_genomes_project 16 1341767 1342725 + Smim22 protein_coding processed_transcript MGP_AJ_T0042991.1 MGP_AJ_G0022442.1 mouse_genomes_project 16 1341767 1342725 + MGP_AJ_P0042991 Smim22 protein_coding protein_coding MGP_AJ_T0042992.1 MGP_AJ_G0022442.1 mouse_genomes_project 16 1341767 1342722 + MGP_AJ_P0042992 Smim22 protein_coding protein_coding MGP_AJ_T0042993.1 MGP_AJ_G0022442.1 mouse_genomes_project 16 1341774 1342725 + Smim22 protein_coding processed_transcript MGP_AJ_T0042994.1 MGP_AJ_G0022442.1 mouse_genomes_project 16 1342183 1342725 + Smim22 protein_coding retained_intron MGP_AJ_T0044376.1 MGP_AJ_G0022781.1 mouse_genomes_project 16 35151039 35178982 + MGP_AJ_P0044376 Cd80 protein_coding protein_coding MGP_AJ_T0042857.1 MGP_AJ_G0022413.1 mouse_genomes_project 16 180276 187777 - Zfp597 protein_coding processed_transcript MGP_AJ_T0042858.1 MGP_AJ_G0022413.1 mouse_genomes_project 16 183482 194374 - MGP_AJ_P0042858 Zfp597 protein_coding protein_coding MGP_AJ_T0042859.1 MGP_AJ_G0022413.1 mouse_genomes_project 16 184337 206321 - Zfp597 protein_coding processed_transcript MGP_AJ_T0042860.1 MGP_AJ_G0022413.1 mouse_genomes_project 16 187242 206377 - Zfp597 protein_coding processed_transcript MGP_AJ_T0042861.1 MGP_AJ_G0022413.1 mouse_genomes_project 16 188541 193707 - Zfp597 protein_coding retained_intron MGP_AJ_T0006874.1 MGP_AJ_G0005661.1 mouse_genomes_project 16 72678255 72687405 + Gm15555 lincRNA lincRNA MGP_AJ_T0003647.1 MGP_AJ_G0003298.1 mouse_genomes_project 16 1342785 1347826 + Gm42477 antisense antisense MGP_AJ_T0006833.1 MGP_AJ_G0005629.1 mouse_genomes_project 16 9910700 9916988 - 2310015D24Rik lincRNA lincRNA MGP_AJ_T0006834.1 MGP_AJ_G0005629.1 mouse_genomes_project 16 9915761 9917676 - 2310015D24Rik lincRNA lincRNA MGP_AJ_T0044772.1 MGP_AJ_G0022885.1 mouse_genomes_project 16 55875727 55876810 - MGP_AJ_P0044772 Olfr190 protein_coding protein_coding MGP_AJ_T0044773.1 MGP_AJ_G0022885.1 mouse_genomes_project 16 55875727 55876757 - MGP_AJ_P0044773 Olfr190 protein_coding protein_coding MGP_AJ_T0044405.1 MGP_AJ_G0022787.1 mouse_genomes_project 16 35470936 35497031 - MGP_AJ_P0044405 Upk1b protein_coding unknown_likely_coding MGP_AJ_T0044971.1 MGP_AJ_G0022962.1 mouse_genomes_project 16 85439734 85440367 + MGP_AJ_P0044971 Gm5965 protein_coding protein_coding MGP_AJ_T0000960.1 MGP_AJ_G0000893.1 mouse_genomes_project 16 74075736 74076388 + TEC TEC MGP_AJ_T0044023.1 MGP_AJ_G0022689.1 mouse_genomes_project 16 28576828 28578273 - MGP_AJ_P0044023 0610012G03Rik protein_coding protein_coding MGP_AJ_T0044865.1 MGP_AJ_G0022923.1 mouse_genomes_project 16 72542167 72592349 - MGP_AJ_P0044865 Samsn1 protein_coding protein_coding MGP_AJ_T0044866.1 MGP_AJ_G0022923.1 mouse_genomes_project 16 72542168 72699434 - MGP_AJ_P0044866 Samsn1 protein_coding protein_coding MGP_AJ_T0044867.1 MGP_AJ_G0022923.1 mouse_genomes_project 16 72565960 72592279 - Samsn1 protein_coding retained_intron MGP_AJ_T0044868.1 MGP_AJ_G0022923.1 mouse_genomes_project 16 72567051 72592349 - Samsn1 protein_coding retained_intron MGP_AJ_T0044869.1 MGP_AJ_G0022923.1 mouse_genomes_project 16 72571179 72592318 - Samsn1 protein_coding retained_intron MGP_AJ_T0044640.1 MGP_AJ_G0022845.1 mouse_genomes_project 16 48968738 49180685 - MGP_AJ_P0044640 Alcam protein_coding protein_coding MGP_AJ_T0044641.1 MGP_AJ_G0022845.1 mouse_genomes_project 16 48970829 49010867 - MGP_AJ_P0044641 Alcam protein_coding protein_coding MGP_AJ_T0044642.1 MGP_AJ_G0022845.1 mouse_genomes_project 16 48971209 49179076 - MGP_AJ_P0044642 Alcam protein_coding protein_coding MGP_AJ_T0044643.1 MGP_AJ_G0022845.1 mouse_genomes_project 16 48972930 48989539 - Alcam protein_coding retained_intron MGP_AJ_T0044644.1 MGP_AJ_G0022845.1 mouse_genomes_project 16 48972963 48991593 - Alcam protein_coding retained_intron MGP_AJ_T0044645.1 MGP_AJ_G0022845.1 mouse_genomes_project 16 48988638 49179076 - MGP_AJ_P0044645 Alcam protein_coding protein_coding MGP_AJ_T0044646.1 MGP_AJ_G0022845.1 mouse_genomes_project 16 49019203 49179265 - MGP_AJ_P0044646 Alcam protein_coding protein_coding MGP_AJ_T0100894.1 MGP_AJ_G0038860.1 mouse_genomes_project 16 61934769 61934899 - Gm22429 snoRNA snoRNA MGP_AJ_T0044171.1 MGP_AJ_G0022724.1 mouse_genomes_project 16 30517930 30638367 + MGP_AJ_P0044171 Itgb5 protein_coding protein_coding MGP_AJ_T0044172.1 MGP_AJ_G0022724.1 mouse_genomes_project 16 30517942 30638374 + MGP_AJ_P0044172 Itgb5 protein_coding protein_coding MGP_AJ_T0044173.1 MGP_AJ_G0022724.1 mouse_genomes_project 16 30571285 30598893 + Itgb5 protein_coding processed_transcript MGP_AJ_T0044174.1 MGP_AJ_G0022724.1 mouse_genomes_project 16 30578280 30585597 + Itgb5 protein_coding processed_transcript MGP_AJ_T0044175.1 MGP_AJ_G0022724.1 mouse_genomes_project 16 30611737 30633369 + Itgb5 protein_coding processed_transcript MGP_AJ_T0044358.1 MGP_AJ_G0022774.1 mouse_genomes_project 16 34942867 34990330 - MGP_AJ_P0044358 Nr1i2 protein_coding protein_coding MGP_AJ_T0043029.1 MGP_AJ_G0022454.1 mouse_genomes_project 16 4814295 4837136 + MGP_AJ_P0043029 Mettl22 protein_coding protein_coding MGP_AJ_T0043030.1 MGP_AJ_G0022454.1 mouse_genomes_project 16 4814298 4835134 + MGP_AJ_P0043030 Mettl22 protein_coding protein_coding MGP_AJ_T0043031.1 MGP_AJ_G0022454.1 mouse_genomes_project 16 4814311 4830776 + MGP_AJ_P0043031 Mettl22 protein_coding protein_coding MGP_AJ_T0043032.1 MGP_AJ_G0022454.1 mouse_genomes_project 16 4832017 4835295 + Mettl22 protein_coding retained_intron MGP_AJ_T0043033.1 MGP_AJ_G0022454.1 mouse_genomes_project 16 4833285 4836648 + Mettl22 protein_coding retained_intron MGP_AJ_T0045075.1 MGP_AJ_G0023007.1 mouse_genomes_project 16 88080062 88107626 + MGP_AJ_P0045075 Gm21970 protein_coding nonsense_mediated_decay MGP_AJ_T0045076.1 MGP_AJ_G0023007.1 mouse_genomes_project 16 88080062 88107626 + MGP_AJ_P0045076 Gm21970 protein_coding protein_coding MGP_AJ_T0013141.1 MGP_AJ_G0011236.1 mouse_genomes_project 16 15492755 15493178 + processed_pseudogene processed_pseudogene MGP_AJ_T0100889.1 MGP_AJ_G0038855.1 mouse_genomes_project 16 51343861 51343986 + Gm23180 snoRNA snoRNA MGP_AJ_T0045377.1 MGP_AJ_G0023064.1 mouse_genomes_project 16 94715917 94731111 - MGP_AJ_P0045377 Zbtb21 protein_coding protein_coding MGP_AJ_T0045378.1 MGP_AJ_G0023064.1 mouse_genomes_project 16 94715917 94731111 - MGP_AJ_P0045378 Zbtb21 protein_coding protein_coding MGP_AJ_T0045379.1 MGP_AJ_G0023064.1 mouse_genomes_project 16 94715917 94731111 - MGP_AJ_P0045379 Zbtb21 protein_coding protein_coding MGP_AJ_T0010122.1 MGP_AJ_G0008244.1 mouse_genomes_project 16 14808267 14808338 - Gm26219 miRNA miRNA MGP_AJ_T0043335.1 MGP_AJ_G0022528.1 mouse_genomes_project 16 13479295 13496344 + MGP_AJ_P0043335 Ypel1 protein_coding protein_coding MGP_AJ_T0043336.1 MGP_AJ_G0022528.1 mouse_genomes_project 16 13479757 13495949 + Ypel1 protein_coding processed_transcript MGP_AJ_T0043337.1 MGP_AJ_G0022528.1 mouse_genomes_project 16 13479797 13488216 + Ypel1 protein_coding retained_intron MGP_AJ_T0043338.1 MGP_AJ_G0022528.1 mouse_genomes_project 16 13479798 13491702 + MGP_AJ_P0043338 Ypel1 protein_coding protein_coding MGP_AJ_T0043339.1 MGP_AJ_G0022528.1 mouse_genomes_project 16 13479825 13496653 + MGP_AJ_P0043339 Ypel1 protein_coding nonsense_mediated_decay MGP_AJ_T0043340.1 MGP_AJ_G0022528.1 mouse_genomes_project 16 13479828 13491784 + MGP_AJ_P0043340 Ypel1 protein_coding protein_coding MGP_AJ_T0043341.1 MGP_AJ_G0022528.1 mouse_genomes_project 16 13479903 13492302 + MGP_AJ_P0043341 Ypel1 protein_coding protein_coding MGP_AJ_T0044800.1 MGP_AJ_G0022901.1 mouse_genomes_project 16 56452025 57389532 - MGP_AJ_P0044800 Epha6 protein_coding protein_coding MGP_AJ_T0044801.1 MGP_AJ_G0022901.1 mouse_genomes_project 16 56466520 56846286 - MGP_AJ_P0044801 Epha6 protein_coding protein_coding MGP_AJ_T0044802.1 MGP_AJ_G0022901.1 mouse_genomes_project 16 57222001 57389815 - Epha6 protein_coding retained_intron MGP_AJ_T0044803.1 MGP_AJ_G0022901.1 mouse_genomes_project 16 57269558 57389503 - Epha6 protein_coding processed_transcript MGP_AJ_T0100891.1 MGP_AJ_G0038857.1 mouse_genomes_project 16 54624588 54624720 - Gm24039 snoRNA snoRNA MGP_AJ_T0043052.1 MGP_AJ_G0022461.1 mouse_genomes_project 16 5045891 5150001 - MGP_AJ_P0043052 Usp7 protein_coding protein_coding MGP_AJ_T0043053.1 MGP_AJ_G0022461.1 mouse_genomes_project 16 5045896 5094589 - MGP_AJ_P0043053 Usp7 protein_coding nonsense_mediated_decay MGP_AJ_T0043054.1 MGP_AJ_G0022461.1 mouse_genomes_project 16 5046442 5094506 - MGP_AJ_P0043054 Usp7 protein_coding protein_coding MGP_AJ_T0043055.1 MGP_AJ_G0022461.1 mouse_genomes_project 16 5047076 5077973 - Usp7 protein_coding processed_transcript MGP_AJ_T0043056.1 MGP_AJ_G0022461.1 mouse_genomes_project 16 5052475 5055128 - Usp7 protein_coding retained_intron MGP_AJ_T0043057.1 MGP_AJ_G0022461.1 mouse_genomes_project 16 5052974 5053879 - Usp7 protein_coding retained_intron MGP_AJ_T0043058.1 MGP_AJ_G0022461.1 mouse_genomes_project 16 5053773 5054830 - Usp7 protein_coding retained_intron MGP_AJ_T0043059.1 MGP_AJ_G0022461.1 mouse_genomes_project 16 5053948 5063059 - MGP_AJ_P0043059 Usp7 protein_coding nonsense_mediated_decay MGP_AJ_T0043060.1 MGP_AJ_G0022461.1 mouse_genomes_project 16 5056454 5060094 - Usp7 protein_coding retained_intron MGP_AJ_T0043061.1 MGP_AJ_G0022461.1 mouse_genomes_project 16 5059778 5063257 - Usp7 protein_coding retained_intron MGP_AJ_T0043062.1 MGP_AJ_G0022461.1 mouse_genomes_project 16 5061275 5061640 - Usp7 protein_coding retained_intron MGP_AJ_T0043063.1 MGP_AJ_G0022461.1 mouse_genomes_project 16 5061284 5062550 - Usp7 protein_coding retained_intron MGP_AJ_T0043064.1 MGP_AJ_G0022461.1 mouse_genomes_project 16 5062290 5063158 - Usp7 protein_coding retained_intron MGP_AJ_T0099630.1 MGP_AJ_G0037596.1 mouse_genomes_project 16 70141600 70141767 - Gm25699 snRNA snRNA MGP_AJ_T0098927.1 MGP_AJ_G0036906.1 mouse_genomes_project 16 2343015 2365721 + 1700123O21Rik sense_intronic sense_intronic MGP_AJ_T0013121.1 MGP_AJ_G0011216.1 mouse_genomes_project 16 6443352 6444118 + processed_pseudogene processed_pseudogene MGP_AJ_T0042995.1 MGP_AJ_G0022443.1 mouse_genomes_project 16 1343128 1347925 - MGP_AJ_P0042995 Rogdi protein_coding protein_coding MGP_AJ_T0042996.1 MGP_AJ_G0022443.1 mouse_genomes_project 16 1343128 1347935 - MGP_AJ_P0042996 Rogdi protein_coding protein_coding MGP_AJ_T0042997.1 MGP_AJ_G0022443.1 mouse_genomes_project 16 1343153 1347925 - MGP_AJ_P0042997 Rogdi protein_coding protein_coding MGP_AJ_T0042998.1 MGP_AJ_G0022443.1 mouse_genomes_project 16 1343383 1345069 - Rogdi protein_coding retained_intron MGP_AJ_T0042999.1 MGP_AJ_G0022443.1 mouse_genomes_project 16 1343622 1344526 - Rogdi protein_coding retained_intron MGP_AJ_T0043000.1 MGP_AJ_G0022443.1 mouse_genomes_project 16 1344315 1346232 - Rogdi protein_coding retained_intron MGP_AJ_T0043001.1 MGP_AJ_G0022443.1 mouse_genomes_project 16 1344452 1346149 - Rogdi protein_coding retained_intron MGP_AJ_T0043002.1 MGP_AJ_G0022443.1 mouse_genomes_project 16 1345264 1347893 - MGP_AJ_P0043002 Rogdi protein_coding protein_coding MGP_AJ_T0043003.1 MGP_AJ_G0022443.1 mouse_genomes_project 16 1346116 1347961 - Rogdi protein_coding retained_intron MGP_AJ_T0043004.1 MGP_AJ_G0022443.1 mouse_genomes_project 16 1346577 1347944 - Rogdi protein_coding retained_intron MGP_AJ_T0043361.1 MGP_AJ_G0022533.1 mouse_genomes_project 16 13559558 13566219 + MGP_AJ_P0043361 Ydjc protein_coding protein_coding MGP_AJ_T0043362.1 MGP_AJ_G0022533.1 mouse_genomes_project 16 13560780 13563784 + Ydjc protein_coding retained_intron MGP_AJ_T0043363.1 MGP_AJ_G0022533.1 mouse_genomes_project 16 13561874 13576744 + MGP_AJ_P0043363 Ydjc protein_coding protein_coding MGP_AJ_T0043364.1 MGP_AJ_G0022533.1 mouse_genomes_project 16 13561886 13566635 + Ydjc protein_coding retained_intron MGP_AJ_T0043365.1 MGP_AJ_G0022533.1 mouse_genomes_project 16 13561913 13563784 + Ydjc protein_coding retained_intron MGP_AJ_T0043366.1 MGP_AJ_G0022533.1 mouse_genomes_project 16 13561916 13563784 + MGP_AJ_P0043366 Ydjc protein_coding protein_coding MGP_AJ_T0013171.1 MGP_AJ_G0011266.1 mouse_genomes_project 16 36621535 36622533 + processed_pseudogene processed_pseudogene MGP_AJ_T0099601.1 MGP_AJ_G0037567.1 mouse_genomes_project 16 20003270 20003341 + Gm23066 snRNA snRNA MGP_AJ_T0006847.1 MGP_AJ_G0005640.1 mouse_genomes_project 16 26493089 26535059 - Gm26569 lincRNA lincRNA MGP_AJ_T0044553.1 MGP_AJ_G0022817.1 mouse_genomes_project 16 42230812 42277574 - Gm609 protein_coding processed_transcript MGP_AJ_T0044554.1 MGP_AJ_G0022817.1 mouse_genomes_project 16 42236818 42306056 - MGP_AJ_P0044554 Gm609 protein_coding protein_coding MGP_AJ_T0006875.1 MGP_AJ_G0005662.1 mouse_genomes_project 16 73709217 73715822 - lincRNA lincRNA MGP_AJ_T0006876.1 MGP_AJ_G0005662.1 mouse_genomes_project 16 73712003 73715828 - lincRNA lincRNA MGP_AJ_T0044708.1 MGP_AJ_G0022862.1 mouse_genomes_project 16 53893662 53904299 - MGP_AJ_P0044708 Nit2 protein_coding protein_coding MGP_AJ_T0099606.1 MGP_AJ_G0037572.1 mouse_genomes_project 16 32065489 32065642 - Gm23518 snRNA snRNA MGP_AJ_T0044817.1 MGP_AJ_G0022906.1 mouse_genomes_project 16 60298638 60619177 - MGP_AJ_P0044817 Epha3 protein_coding protein_coding MGP_AJ_T0043782.1 MGP_AJ_G0022621.1 mouse_genomes_project 16 17950106 18171444 + MGP_AJ_P0043782 Vps8 protein_coding protein_coding MGP_AJ_T0043783.1 MGP_AJ_G0022621.1 mouse_genomes_project 16 17950106 18107145 + MGP_AJ_P0043783 Vps8 protein_coding protein_coding MGP_AJ_T0043784.1 MGP_AJ_G0022621.1 mouse_genomes_project 16 17950106 18171444 + MGP_AJ_P0043784 Vps8 protein_coding protein_coding MGP_AJ_T0043785.1 MGP_AJ_G0022621.1 mouse_genomes_project 16 17950157 18171444 + MGP_AJ_P0043785 Vps8 protein_coding protein_coding MGP_AJ_T0043786.1 MGP_AJ_G0022621.1 mouse_genomes_project 16 17950184 18073807 + MGP_AJ_P0043786 Vps8 protein_coding protein_coding MGP_AJ_T0043787.1 MGP_AJ_G0022621.1 mouse_genomes_project 16 17950189 18171436 + MGP_AJ_P0043787 Vps8 protein_coding protein_coding MGP_AJ_T0043788.1 MGP_AJ_G0022621.1 mouse_genomes_project 16 17950260 17961962 + MGP_AJ_P0043788 Vps8 protein_coding protein_coding MGP_AJ_T0043789.1 MGP_AJ_G0022621.1 mouse_genomes_project 16 17997724 18168336 + MGP_AJ_P0043789 Vps8 protein_coding protein_coding MGP_AJ_T0043790.1 MGP_AJ_G0022621.1 mouse_genomes_project 16 18036018 18171439 + MGP_AJ_P0043790 Vps8 protein_coding protein_coding MGP_AJ_T0043791.1 MGP_AJ_G0022621.1 mouse_genomes_project 16 18054851 18060551 + Vps8 protein_coding retained_intron MGP_AJ_T0043792.1 MGP_AJ_G0022621.1 mouse_genomes_project 16 18054921 18087321 + MGP_AJ_P0043792 Vps8 protein_coding nonsense_mediated_decay MGP_AJ_T0043793.1 MGP_AJ_G0022621.1 mouse_genomes_project 16 18096261 18110046 + Vps8 protein_coding retained_intron MGP_AJ_T0043794.1 MGP_AJ_G0022621.1 mouse_genomes_project 16 18154433 18171180 + Vps8 protein_coding processed_transcript MGP_AJ_T0044345.1 MGP_AJ_G0022769.1 mouse_genomes_project 16 34455761 34516559 + MGP_AJ_P0044345 Fstl1 protein_coding protein_coding MGP_AJ_T0044346.1 MGP_AJ_G0022769.1 mouse_genomes_project 16 34455963 34473921 + Fstl1 protein_coding processed_transcript MGP_AJ_T0044347.1 MGP_AJ_G0022769.1 mouse_genomes_project 16 34456040 34498997 + Fstl1 protein_coding retained_intron MGP_AJ_T0044348.1 MGP_AJ_G0022769.1 mouse_genomes_project 16 34495748 34514471 + Fstl1 protein_coding processed_transcript MGP_AJ_T0044349.1 MGP_AJ_G0022769.1 mouse_genomes_project 16 34502757 34515669 + Fstl1 protein_coding processed_transcript MGP_AJ_T0043050.1 MGP_AJ_G0022460.1 mouse_genomes_project 16 5037063 5040201 + MGP_AJ_P0043050 Gm43786 protein_coding protein_coding MGP_AJ_T0043051.1 MGP_AJ_G0022460.1 mouse_genomes_project 16 5039125 5040207 + Gm43786 protein_coding processed_transcript MGP_AJ_T0043624.1 MGP_AJ_G0022585.1 mouse_genomes_project 16 15752890 15753985 - MGP_AJ_P0043624 Olfr164 protein_coding protein_coding MGP_AJ_T0044063.1 MGP_AJ_G0022700.1 mouse_genomes_project 16 28900946 28914292 + MGP_AJ_P0044063 Rnf168 protein_coding protein_coding MGP_AJ_T0044064.1 MGP_AJ_G0022700.1 mouse_genomes_project 16 28900948 28924436 + MGP_AJ_P0044064 Rnf168 protein_coding protein_coding MGP_AJ_T0044065.1 MGP_AJ_G0022700.1 mouse_genomes_project 16 28900948 28924964 + MGP_AJ_P0044065 Rnf168 protein_coding protein_coding MGP_AJ_T0043696.1 MGP_AJ_G0022607.1 mouse_genomes_project 16 17024930 17039160 + MGP_AJ_P0043696 Abcf3 protein_coding protein_coding MGP_AJ_T0043697.1 MGP_AJ_G0022607.1 mouse_genomes_project 16 17026021 17028541 + Abcf3 protein_coding retained_intron MGP_AJ_T0043698.1 MGP_AJ_G0022607.1 mouse_genomes_project 16 17026930 17035745 + Abcf3 protein_coding retained_intron MGP_AJ_T0043699.1 MGP_AJ_G0022607.1 mouse_genomes_project 16 17036215 17038051 + Abcf3 protein_coding retained_intron MGP_AJ_T0043700.1 MGP_AJ_G0022607.1 mouse_genomes_project 16 17036528 17038599 + Abcf3 protein_coding retained_intron MGP_AJ_T0044204.1 MGP_AJ_G0022731.1 mouse_genomes_project 16 31830130 31983739 + MGP_AJ_P0044204 Adcy5 protein_coding protein_coding MGP_AJ_T0044819.1 MGP_AJ_G0022908.1 mouse_genomes_project 16 61521899 61531203 - MGP_AJ_P0044819 4930453N24Rik protein_coding protein_coding MGP_AJ_T0044604.1 MGP_AJ_G0022836.1 mouse_genomes_project 16 45697452 45711895 - Dzip3 protein_coding retained_intron MGP_AJ_T0044605.1 MGP_AJ_G0022836.1 mouse_genomes_project 16 45697452 45768468 - MGP_AJ_P0044605 Dzip3 protein_coding protein_coding MGP_AJ_T0044606.1 MGP_AJ_G0022836.1 mouse_genomes_project 16 45697454 45711803 - Dzip3 protein_coding retained_intron MGP_AJ_T0044607.1 MGP_AJ_G0022836.1 mouse_genomes_project 16 45699099 45768244 - MGP_AJ_P0044607 Dzip3 protein_coding protein_coding MGP_AJ_T0044608.1 MGP_AJ_G0022836.1 mouse_genomes_project 16 45700086 45702968 - MGP_AJ_P0044608 Dzip3 protein_coding protein_coding MGP_AJ_T0044609.1 MGP_AJ_G0022836.1 mouse_genomes_project 16 45700306 45704514 - Dzip3 protein_coding retained_intron MGP_AJ_T0044610.1 MGP_AJ_G0022836.1 mouse_genomes_project 16 45719613 45728063 - Dzip3 protein_coding retained_intron MGP_AJ_T0044744.1 MGP_AJ_G0022874.1 mouse_genomes_project 16 55441805 55450961 + MGP_AJ_P0044744 Cldnd1 protein_coding protein_coding MGP_AJ_T0044745.1 MGP_AJ_G0022874.1 mouse_genomes_project 16 55441820 55450318 + MGP_AJ_P0044745 Cldnd1 protein_coding protein_coding MGP_AJ_T0044746.1 MGP_AJ_G0022874.1 mouse_genomes_project 16 55441918 55449699 + MGP_AJ_P0044746 Cldnd1 protein_coding nonsense_mediated_decay MGP_AJ_T0044747.1 MGP_AJ_G0022874.1 mouse_genomes_project 16 55441934 55449618 + Cldnd1 protein_coding processed_transcript MGP_AJ_T0044748.1 MGP_AJ_G0022874.1 mouse_genomes_project 16 55441943 55448089 + MGP_AJ_P0044748 Cldnd1 protein_coding protein_coding MGP_AJ_T0044749.1 MGP_AJ_G0022874.1 mouse_genomes_project 16 55448973 55449690 + Cldnd1 protein_coding retained_intron MGP_AJ_T0013166.1 MGP_AJ_G0011261.1 mouse_genomes_project 16 33891902 33892749 - processed_pseudogene processed_pseudogene MGP_AJ_T0044719.1 MGP_AJ_G0022868.1 mouse_genomes_project 16 55118514 55180147 + MGP_AJ_P0044719 Dcbld2 protein_coding protein_coding MGP_AJ_T0044720.1 MGP_AJ_G0022868.1 mouse_genomes_project 16 55165324 55175798 + Dcbld2 protein_coding processed_transcript MGP_AJ_T0044721.1 MGP_AJ_G0022868.1 mouse_genomes_project 16 55165979 55166680 + Dcbld2 protein_coding processed_transcript MGP_AJ_T0044722.1 MGP_AJ_G0022868.1 mouse_genomes_project 16 55166510 55174241 + Dcbld2 protein_coding retained_intron MGP_AJ_T0044723.1 MGP_AJ_G0022868.1 mouse_genomes_project 16 55170583 55176247 + Dcbld2 protein_coding processed_transcript MGP_AJ_T0044724.1 MGP_AJ_G0022868.1 mouse_genomes_project 16 55170627 55177144 + Dcbld2 protein_coding retained_intron MGP_AJ_T0044725.1 MGP_AJ_G0022868.1 mouse_genomes_project 16 55170629 55177207 + Dcbld2 protein_coding retained_intron MGP_AJ_T0044814.1 MGP_AJ_G0022905.1 mouse_genomes_project 16 59619186 59696359 + MGP_AJ_P0044814 Pros1 protein_coding protein_coding MGP_AJ_T0044815.1 MGP_AJ_G0022905.1 mouse_genomes_project 16 59663431 59665627 + Pros1 protein_coding retained_intron MGP_AJ_T0044816.1 MGP_AJ_G0022905.1 mouse_genomes_project 16 59688479 59695403 + Pros1 protein_coding processed_transcript MGP_AJ_T0043876.1 MGP_AJ_G0022646.1 mouse_genomes_project 16 20029727 20099193 - MGP_AJ_P0043876 Masp1 protein_coding protein_coding MGP_AJ_T0043877.1 MGP_AJ_G0022646.1 mouse_genomes_project 16 20058126 20099153 - MGP_AJ_P0043877 Masp1 protein_coding unknown_likely_coding MGP_AJ_T0043796.1 MGP_AJ_G0022623.1 mouse_genomes_project 16 18284762 18311267 - MGP_AJ_P0043796 Ehhadh protein_coding protein_coding MGP_AJ_T0000128.1 MGP_AJ_G0000097.1 mouse_genomes_project 16 15707624 15708108 - MGP_AJ_P0000128 Iglv3 IG_V_gene IG_V_gene MGP_AJ_T0102365.1 MGP_AJ_G0040107.1 mouse_genomes_project 16 55757633 55759528 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0010113.1 MGP_AJ_G0008235.1 mouse_genomes_project 16 10227903 10227992 + Gm27734 miRNA miRNA MGP_AJ_T0044066.1 MGP_AJ_G0022701.1 mouse_genomes_project 16 28957857 29020556 + MGP_AJ_P0044066 Ubxn7 protein_coding protein_coding MGP_AJ_T0044524.1 MGP_AJ_G0022812.1 mouse_genomes_project 16 41894829 41895605 + Ccdc80 protein_coding processed_transcript MGP_AJ_T0044525.1 MGP_AJ_G0022812.1 mouse_genomes_project 16 41894881 41896314 + Ccdc80 protein_coding processed_transcript MGP_AJ_T0044526.1 MGP_AJ_G0022812.1 mouse_genomes_project 16 41895017 41895770 + Ccdc80 protein_coding processed_transcript MGP_AJ_T0044527.1 MGP_AJ_G0022812.1 mouse_genomes_project 16 41895039 41931185 + MGP_AJ_P0044527 Ccdc80 protein_coding protein_coding MGP_AJ_T0044528.1 MGP_AJ_G0022812.1 mouse_genomes_project 16 41895102 41896580 + Ccdc80 protein_coding processed_transcript MGP_AJ_T0044529.1 MGP_AJ_G0022812.1 mouse_genomes_project 16 41895462 41931444 + MGP_AJ_P0044529 Ccdc80 protein_coding protein_coding MGP_AJ_T0043985.1 MGP_AJ_G0022680.1 mouse_genomes_project 16 27693032 27803643 - MGP_AJ_P0043985 Acap2 protein_coding protein_coding MGP_AJ_T0043986.1 MGP_AJ_G0022680.1 mouse_genomes_project 16 27702349 27803396 - MGP_AJ_P0043986 Acap2 protein_coding unknown_likely_coding MGP_AJ_T0000954.1 MGP_AJ_G0000887.1 mouse_genomes_project 16 36820718 36820761 + TEC TEC MGP_AJ_T0003671.1 MGP_AJ_G0003318.1 mouse_genomes_project 16 31611015 31614381 - 1700119H24Rik antisense antisense MGP_AJ_T0006826.1 MGP_AJ_G0005622.1 mouse_genomes_project 16 1265388 1269952 - Gm16861 lincRNA lincRNA MGP_AJ_T0010118.1 MGP_AJ_G0008240.1 mouse_genomes_project 16 14608090 14608172 - Mir6366 miRNA miRNA MGP_AJ_T0044786.1 MGP_AJ_G0022898.1 mouse_genomes_project 16 56270894 56291476 + MGP_AJ_P0044786 Mina protein_coding protein_coding MGP_AJ_T0044787.1 MGP_AJ_G0022898.1 mouse_genomes_project 16 56270923 56276685 + MGP_AJ_P0044787 Mina protein_coding protein_coding MGP_AJ_T0044788.1 MGP_AJ_G0022898.1 mouse_genomes_project 16 56270941 56290676 + MGP_AJ_P0044788 Mina protein_coding protein_coding MGP_AJ_T0044789.1 MGP_AJ_G0022898.1 mouse_genomes_project 16 56271187 56291299 + MGP_AJ_P0044789 Mina protein_coding protein_coding MGP_AJ_T0044790.1 MGP_AJ_G0022898.1 mouse_genomes_project 16 56271462 56274876 + MGP_AJ_P0044790 Mina protein_coding protein_coding MGP_AJ_T0044791.1 MGP_AJ_G0022898.1 mouse_genomes_project 16 56286556 56288820 + Mina protein_coding retained_intron MGP_AJ_T0006838.1 MGP_AJ_G0005633.1 mouse_genomes_project 16 17772821 17822112 - lincRNA lincRNA MGP_AJ_T0100885.1 MGP_AJ_G0038851.1 mouse_genomes_project 16 48821771 48821904 - Gm23513 snoRNA snoRNA MGP_AJ_T0044920.1 MGP_AJ_G0022941.1 mouse_genomes_project 16 82495620 82504894 - MGP_AJ_P0044920 Adamts1 protein_coding protein_coding MGP_AJ_T0044921.1 MGP_AJ_G0022941.1 mouse_genomes_project 16 82497263 82503260 - MGP_AJ_P0044921 Adamts1 protein_coding protein_coding MGP_AJ_T0044922.1 MGP_AJ_G0022941.1 mouse_genomes_project 16 82500018 82501426 - Adamts1 protein_coding processed_transcript MGP_AJ_T0099625.1 MGP_AJ_G0037591.1 mouse_genomes_project 16 52335056 52335163 - Gm23003 snRNA snRNA MGP_AJ_T0045365.1 MGP_AJ_G0023062.1 mouse_genomes_project 16 94557035 94617514 - MGP_AJ_P0045365 Prdm15 protein_coding protein_coding MGP_AJ_T0045366.1 MGP_AJ_G0023062.1 mouse_genomes_project 16 94557088 94618137 - MGP_AJ_P0045366 Prdm15 protein_coding protein_coding MGP_AJ_T0045367.1 MGP_AJ_G0023062.1 mouse_genomes_project 16 94557090 94618078 - MGP_AJ_P0045367 Prdm15 protein_coding unknown_likely_coding MGP_AJ_T0045368.1 MGP_AJ_G0023062.1 mouse_genomes_project 16 94557445 94618070 - MGP_AJ_P0045368 Prdm15 protein_coding nonsense_mediated_decay MGP_AJ_T0045369.1 MGP_AJ_G0023062.1 mouse_genomes_project 16 94557898 94565886 - Prdm15 protein_coding retained_intron MGP_AJ_T0045370.1 MGP_AJ_G0023062.1 mouse_genomes_project 16 94560084 94569576 - Prdm15 protein_coding processed_transcript MGP_AJ_T0045371.1 MGP_AJ_G0023062.1 mouse_genomes_project 16 94561305 94563503 - Prdm15 protein_coding retained_intron MGP_AJ_T0045372.1 MGP_AJ_G0023062.1 mouse_genomes_project 16 94585125 94596074 - Prdm15 protein_coding retained_intron MGP_AJ_T0045373.1 MGP_AJ_G0023062.1 mouse_genomes_project 16 94601651 94606253 - Prdm15 protein_coding retained_intron MGP_AJ_T0045374.1 MGP_AJ_G0023062.1 mouse_genomes_project 16 94602069 94615170 - MGP_AJ_P0045374 Prdm15 protein_coding protein_coding MGP_AJ_T0045375.1 MGP_AJ_G0023062.1 mouse_genomes_project 16 94603966 94617514 - MGP_AJ_P0045375 Prdm15 protein_coding protein_coding MGP_AJ_T0044757.1 MGP_AJ_G0022879.1 mouse_genomes_project 16 55650261 55665642 - MGP_AJ_P0044757 Olfr180 protein_coding protein_coding MGP_AJ_T0044758.1 MGP_AJ_G0022879.1 mouse_genomes_project 16 55651668 55654481 - MGP_AJ_P0044758 Olfr180 protein_coding protein_coding MGP_AJ_T0044759.1 MGP_AJ_G0022879.1 mouse_genomes_project 16 55652216 55654481 - MGP_AJ_P0044759 Olfr180 protein_coding protein_coding MGP_AJ_T0044408.1 MGP_AJ_G0022789.1 mouse_genomes_project 16 35586695 35720328 + MGP_AJ_P0044408 Igsf11 protein_coding protein_coding MGP_AJ_T0044409.1 MGP_AJ_G0022789.1 mouse_genomes_project 16 35587520 35722158 + MGP_AJ_P0044409 Igsf11 protein_coding protein_coding MGP_AJ_T0044600.1 MGP_AJ_G0022832.1 mouse_genomes_project 16 45526754 45529299 - MGP_AJ_P0044600 protein_coding protein_coding MGP_AJ_T0044839.1 MGP_AJ_G0022917.1 mouse_genomes_project 16 67058414 67302897 + MGP_AJ_P0044839 Gbe1 protein_coding protein_coding MGP_AJ_T0044840.1 MGP_AJ_G0022917.1 mouse_genomes_project 16 67058528 67110064 + Gbe1 protein_coding retained_intron MGP_AJ_T0044841.1 MGP_AJ_G0022917.1 mouse_genomes_project 16 67058529 67276918 + Gbe1 protein_coding retained_intron MGP_AJ_T0044842.1 MGP_AJ_G0022917.1 mouse_genomes_project 16 67058529 67276487 + MGP_AJ_P0044842 Gbe1 protein_coding protein_coding MGP_AJ_T0044843.1 MGP_AJ_G0022917.1 mouse_genomes_project 16 67058552 67302897 + MGP_AJ_P0044843 Gbe1 protein_coding protein_coding MGP_AJ_T0044844.1 MGP_AJ_G0022917.1 mouse_genomes_project 16 67058599 67302895 + MGP_AJ_P0044844 Gbe1 protein_coding protein_coding MGP_AJ_T0044845.1 MGP_AJ_G0022917.1 mouse_genomes_project 16 67294311 67302678 + Gbe1 protein_coding retained_intron MGP_AJ_T0043115.1 MGP_AJ_G0022478.1 mouse_genomes_project 16 7222707 7222787 + MGP_AJ_P0043115 Gm11172 protein_coding protein_coding MGP_AJ_T0010111.1 MGP_AJ_G0008233.1 mouse_genomes_project 16 9851329 9851416 + Mir365-1 miRNA miRNA MGP_AJ_T0043883.1 MGP_AJ_G0022651.1 mouse_genomes_project 16 20986025 21590855 + MGP_AJ_P0043883 Lpp protein_coding protein_coding MGP_AJ_T0043884.1 MGP_AJ_G0022651.1 mouse_genomes_project 16 21041080 21590855 + MGP_AJ_P0043884 Lpp protein_coding protein_coding MGP_AJ_T0043885.1 MGP_AJ_G0022651.1 mouse_genomes_project 16 21318247 21590855 + MGP_AJ_P0043885 Lpp protein_coding protein_coding MGP_AJ_T0043375.1 MGP_AJ_G0022537.1 mouse_genomes_project 16 13698980 13701378 + MGP_AJ_P0043375 Tmem191c protein_coding protein_coding MGP_AJ_T0043376.1 MGP_AJ_G0022537.1 mouse_genomes_project 16 13699025 13701378 + MGP_AJ_P0043376 Tmem191c protein_coding protein_coding MGP_AJ_T0043377.1 MGP_AJ_G0022537.1 mouse_genomes_project 16 13699044 13700197 + Tmem191c protein_coding processed_transcript MGP_AJ_T0043378.1 MGP_AJ_G0022537.1 mouse_genomes_project 16 13699058 13699813 + Tmem191c protein_coding retained_intron MGP_AJ_T0043379.1 MGP_AJ_G0022537.1 mouse_genomes_project 16 13699058 13701374 + MGP_AJ_P0043379 Tmem191c protein_coding protein_coding MGP_AJ_T0043380.1 MGP_AJ_G0022537.1 mouse_genomes_project 16 13699064 13700119 + Tmem191c protein_coding processed_transcript MGP_AJ_T0043381.1 MGP_AJ_G0022537.1 mouse_genomes_project 16 13699150 13700454 + MGP_AJ_P0043381 Tmem191c protein_coding protein_coding MGP_AJ_T0043382.1 MGP_AJ_G0022537.1 mouse_genomes_project 16 13699393 13701378 + MGP_AJ_P0043382 Tmem191c protein_coding protein_coding MGP_AJ_T0043383.1 MGP_AJ_G0022537.1 mouse_genomes_project 16 13699576 13700922 + MGP_AJ_P0043383 Tmem191c protein_coding protein_coding MGP_AJ_T0043384.1 MGP_AJ_G0022537.1 mouse_genomes_project 16 13699797 13700770 + Tmem191c protein_coding retained_intron MGP_AJ_T0043385.1 MGP_AJ_G0022537.1 mouse_genomes_project 16 13699811 13700883 + Tmem191c protein_coding retained_intron MGP_AJ_T0043386.1 MGP_AJ_G0022537.1 mouse_genomes_project 16 13700317 13705943 + Tmem191c protein_coding retained_intron MGP_AJ_T0006850.1 MGP_AJ_G0005643.1 mouse_genomes_project 16 26792927 26797902 - Gm26562 lincRNA lincRNA MGP_AJ_T0010166.1 MGP_AJ_G0008288.1 mouse_genomes_project 16 92775700 92775824 - Gm27833 miRNA miRNA MGP_AJ_T0043277.1 MGP_AJ_G0022518.1 mouse_genomes_project 16 12718127 12765486 - MGP_AJ_P0043277 Dnm1l protein_coding protein_coding MGP_AJ_T0043278.1 MGP_AJ_G0022518.1 mouse_genomes_project 16 12718127 12765486 - MGP_AJ_P0043278 Dnm1l protein_coding protein_coding MGP_AJ_T0043279.1 MGP_AJ_G0022518.1 mouse_genomes_project 16 12718127 12765486 - MGP_AJ_P0043279 Dnm1l protein_coding protein_coding MGP_AJ_T0044253.1 MGP_AJ_G0022748.1 mouse_genomes_project 16 32884799 32886508 + MGP_AJ_P0044253 2010005H15Rik protein_coding protein_coding MGP_AJ_T0044254.1 MGP_AJ_G0022748.1 mouse_genomes_project 16 32884799 32886481 + MGP_AJ_P0044254 2010005H15Rik protein_coding protein_coding MGP_AJ_T0043682.1 MGP_AJ_G0022605.1 mouse_genomes_project 16 16992951 17007312 + MGP_AJ_P0043682 Dvl3 protein_coding protein_coding MGP_AJ_T0043683.1 MGP_AJ_G0022605.1 mouse_genomes_project 16 16993033 17008182 + MGP_AJ_P0043683 Dvl3 protein_coding protein_coding MGP_AJ_T0043684.1 MGP_AJ_G0022605.1 mouse_genomes_project 16 16993075 17007308 + MGP_AJ_P0043684 Dvl3 protein_coding protein_coding MGP_AJ_T0043685.1 MGP_AJ_G0022605.1 mouse_genomes_project 16 16993155 17001037 + Dvl3 protein_coding retained_intron MGP_AJ_T0043356.1 MGP_AJ_G0022532.1 mouse_genomes_project 16 13553997 13559020 - MGP_AJ_P0043356 Ccdc116 protein_coding unknown_likely_coding MGP_AJ_T0043357.1 MGP_AJ_G0022532.1 mouse_genomes_project 16 13554001 13562167 - MGP_AJ_P0043357 Ccdc116 protein_coding protein_coding MGP_AJ_T0043358.1 MGP_AJ_G0022532.1 mouse_genomes_project 16 13555973 13559147 - MGP_AJ_P0043358 Ccdc116 protein_coding protein_coding MGP_AJ_T0043359.1 MGP_AJ_G0022532.1 mouse_genomes_project 16 13555974 13559361 - MGP_AJ_P0043359 Ccdc116 protein_coding protein_coding MGP_AJ_T0043360.1 MGP_AJ_G0022532.1 mouse_genomes_project 16 13557658 13559376 - Ccdc116 protein_coding processed_transcript MGP_AJ_T0011409.1 MGP_AJ_G0009531.1 mouse_genomes_project 16 37748967 37749118 - Gm27717 misc_RNA misc_RNA MGP_AJ_T0044999.1 MGP_AJ_G0022986.1 mouse_genomes_project 16 86072759 86073507 - MGP_AJ_P0044999 Krtap21-1 protein_coding protein_coding MGP_AJ_T0099632.1 MGP_AJ_G0037598.1 mouse_genomes_project 16 77396368 77396467 + Gm24773 snRNA snRNA MGP_AJ_T0043614.1 MGP_AJ_G0022583.1 mouse_genomes_project 16 15327322 15332072 - MGP_AJ_P0043614 Mrpl40 protein_coding protein_coding MGP_AJ_T0043615.1 MGP_AJ_G0022583.1 mouse_genomes_project 16 15327530 15331844 - MGP_AJ_P0043615 Mrpl40 protein_coding protein_coding MGP_AJ_T0043972.1 MGP_AJ_G0022677.1 mouse_genomes_project 16 27163340 27191218 - MGP_AJ_P0043972 Lsg1 protein_coding protein_coding MGP_AJ_T0043973.1 MGP_AJ_G0022677.1 mouse_genomes_project 16 27164217 27191215 - MGP_AJ_P0043973 Lsg1 protein_coding nonsense_mediated_decay MGP_AJ_T0043974.1 MGP_AJ_G0022677.1 mouse_genomes_project 16 27167524 27191189 - Lsg1 protein_coding retained_intron MGP_AJ_T0043975.1 MGP_AJ_G0022677.1 mouse_genomes_project 16 27167876 27170953 - Lsg1 protein_coding retained_intron MGP_AJ_T0043976.1 MGP_AJ_G0022677.1 mouse_genomes_project 16 27170856 27191218 - Lsg1 protein_coding retained_intron MGP_AJ_T0043977.1 MGP_AJ_G0022677.1 mouse_genomes_project 16 27175003 27189276 - MGP_AJ_P0043977 Lsg1 protein_coding protein_coding MGP_AJ_T0043978.1 MGP_AJ_G0022677.1 mouse_genomes_project 16 27176941 27191200 - Lsg1 protein_coding retained_intron MGP_AJ_T0043979.1 MGP_AJ_G0022677.1 mouse_genomes_project 16 27185879 27191165 - Lsg1 protein_coding retained_intron MGP_AJ_T0043931.1 MGP_AJ_G0022668.1 mouse_genomes_project 16 25986013 26037379 - MGP_AJ_P0043931 Atp13a4 protein_coding nonsense_mediated_decay MGP_AJ_T0043932.1 MGP_AJ_G0022668.1 mouse_genomes_project 16 25986188 26122355 - MGP_AJ_P0043932 Atp13a4 protein_coding protein_coding MGP_AJ_T0043933.1 MGP_AJ_G0022668.1 mouse_genomes_project 16 25986200 26122241 - MGP_AJ_P0043933 Atp13a4 protein_coding protein_coding MGP_AJ_T0043934.1 MGP_AJ_G0022668.1 mouse_genomes_project 16 25986206 25998724 - Atp13a4 protein_coding processed_transcript MGP_AJ_T0043935.1 MGP_AJ_G0022668.1 mouse_genomes_project 16 25986246 26125642 - MGP_AJ_P0043935 Atp13a4 protein_coding nonsense_mediated_decay MGP_AJ_T0043936.1 MGP_AJ_G0022668.1 mouse_genomes_project 16 25986572 25998154 - Atp13a4 protein_coding retained_intron MGP_AJ_T0043937.1 MGP_AJ_G0022668.1 mouse_genomes_project 16 25999066 26027674 - Atp13a4 protein_coding retained_intron MGP_AJ_T0043938.1 MGP_AJ_G0022668.1 mouse_genomes_project 16 26011842 26028717 - MGP_AJ_P0043938 Atp13a4 protein_coding nonsense_mediated_decay MGP_AJ_T0043939.1 MGP_AJ_G0022668.1 mouse_genomes_project 16 26011851 26125642 - MGP_AJ_P0043939 Atp13a4 protein_coding protein_coding MGP_AJ_T0043940.1 MGP_AJ_G0022668.1 mouse_genomes_project 16 26121181 26125576 - Atp13a4 protein_coding retained_intron MGP_AJ_T0043941.1 MGP_AJ_G0022668.1 mouse_genomes_project 16 26121234 26125637 - Atp13a4 protein_coding retained_intron MGP_AJ_T0043879.1 MGP_AJ_G0022648.1 mouse_genomes_project 16 20475170 20476434 - MGP_AJ_P0043879 Sst protein_coding protein_coding MGP_AJ_T0013148.1 MGP_AJ_G0011243.1 mouse_genomes_project 16 18756511 18757923 + processed_pseudogene processed_pseudogene MGP_AJ_T0044046.1 MGP_AJ_G0022695.1 mouse_genomes_project 16 28774256 28791741 - MGP_AJ_P0044046 Nrros protein_coding protein_coding MGP_AJ_T0044047.1 MGP_AJ_G0022695.1 mouse_genomes_project 16 28774266 28791713 - MGP_AJ_P0044047 Nrros protein_coding protein_coding MGP_AJ_T0044048.1 MGP_AJ_G0022695.1 mouse_genomes_project 16 28774266 28779355 - MGP_AJ_P0044048 Nrros protein_coding protein_coding MGP_AJ_T0044049.1 MGP_AJ_G0022695.1 mouse_genomes_project 16 28774296 28791632 - MGP_AJ_P0044049 Nrros protein_coding protein_coding MGP_AJ_T0044050.1 MGP_AJ_G0022695.1 mouse_genomes_project 16 28774296 28791650 - MGP_AJ_P0044050 Nrros protein_coding protein_coding MGP_AJ_T0044051.1 MGP_AJ_G0022695.1 mouse_genomes_project 16 28776153 28791750 - MGP_AJ_P0044051 Nrros protein_coding protein_coding MGP_AJ_T0044052.1 MGP_AJ_G0022695.1 mouse_genomes_project 16 28776286 28791632 - Nrros protein_coding processed_transcript MGP_AJ_T0044053.1 MGP_AJ_G0022695.1 mouse_genomes_project 16 28776298 28779548 - Nrros protein_coding processed_transcript MGP_AJ_T0044054.1 MGP_AJ_G0022695.1 mouse_genomes_project 16 28776345 28791638 - MGP_AJ_P0044054 Nrros protein_coding protein_coding MGP_AJ_T0044055.1 MGP_AJ_G0022695.1 mouse_genomes_project 16 28779025 28791613 - Nrros protein_coding processed_transcript MGP_AJ_T0042983.1 MGP_AJ_G0022438.1 mouse_genomes_project 16 1269477 1271387 + MGP_AJ_P0042983 Nudt16l1 protein_coding protein_coding MGP_AJ_T0044987.1 MGP_AJ_G0022976.1 mouse_genomes_project 16 85699411 85699943 - MGP_AJ_P0044987 Gm10228 protein_coding protein_coding MGP_AJ_T0044248.1 MGP_AJ_G0022744.1 mouse_genomes_project 16 32814195 32825487 - MGP_AJ_P0044248 Csta1 protein_coding protein_coding MGP_AJ_T0044249.1 MGP_AJ_G0022744.1 mouse_genomes_project 16 32816418 32825451 - MGP_AJ_P0044249 Csta1 protein_coding protein_coding MGP_AJ_T0043558.1 MGP_AJ_G0022571.1 mouse_genomes_project 16 14855745 14863353 - MGP_AJ_P0043558 Comt protein_coding protein_coding MGP_AJ_T0043559.1 MGP_AJ_G0022571.1 mouse_genomes_project 16 14857344 14876689 - MGP_AJ_P0043559 Comt protein_coding protein_coding MGP_AJ_T0043560.1 MGP_AJ_G0022571.1 mouse_genomes_project 16 14857402 14876222 - MGP_AJ_P0043560 Comt protein_coding protein_coding MGP_AJ_T0043561.1 MGP_AJ_G0022571.1 mouse_genomes_project 16 14860621 14863353 - MGP_AJ_P0043561 Comt protein_coding protein_coding MGP_AJ_T0006862.1 MGP_AJ_G0005654.1 mouse_genomes_project 16 47481279 47494094 - Dubr lincRNA lincRNA MGP_AJ_T0006863.1 MGP_AJ_G0005654.1 mouse_genomes_project 16 47481284 47494004 - Dubr lincRNA lincRNA MGP_AJ_T0006864.1 MGP_AJ_G0005654.1 mouse_genomes_project 16 47488062 47494058 - Dubr lincRNA lincRNA MGP_AJ_T0006865.1 MGP_AJ_G0005654.1 mouse_genomes_project 16 47488747 47494009 - Dubr lincRNA lincRNA MGP_AJ_T0043609.1 MGP_AJ_G0022581.1 mouse_genomes_project 16 15293532 15297000 + MGP_AJ_P0043609 2510002D24Rik protein_coding protein_coding MGP_AJ_T0043610.1 MGP_AJ_G0022581.1 mouse_genomes_project 16 15293535 15294342 + MGP_AJ_P0043610 2510002D24Rik protein_coding protein_coding MGP_AJ_T0043611.1 MGP_AJ_G0022581.1 mouse_genomes_project 16 15293535 15296885 + MGP_AJ_P0043611 2510002D24Rik protein_coding protein_coding MGP_AJ_T0043613.1 MGP_AJ_G0022581.1 mouse_genomes_project 16 15293609 15296745 + 2510002D24Rik protein_coding retained_intron MGP_AJ_T0006829.1 MGP_AJ_G0005625.1 mouse_genomes_project 16 7423370 7429465 + Gm4262 lincRNA lincRNA MGP_AJ_T0044887.1 MGP_AJ_G0022932.1 mouse_genomes_project 16 75619214 75640727 + MGP_AJ_P0044887 Chodl protein_coding protein_coding MGP_AJ_T0044888.1 MGP_AJ_G0022932.1 mouse_genomes_project 16 75619214 75636205 + MGP_AJ_P0044888 Chodl protein_coding protein_coding MGP_AJ_T0044889.1 MGP_AJ_G0022932.1 mouse_genomes_project 16 75619214 75638897 + MGP_AJ_P0044889 Chodl protein_coding protein_coding MGP_AJ_T0045122.1 MGP_AJ_G0023016.1 mouse_genomes_project 16 88378449 88627489 - MGP_AJ_P0045122 Atp5o protein_coding protein_coding MGP_AJ_T0045160.1 MGP_AJ_G0023016.1 mouse_genomes_project 16 88624340 88632192 - MGP_AJ_P0045160 Atp5o protein_coding protein_coding MGP_AJ_T0045161.1 MGP_AJ_G0023016.1 mouse_genomes_project 16 88624345 88627191 - Atp5o protein_coding retained_intron MGP_AJ_T0045162.1 MGP_AJ_G0023016.1 mouse_genomes_project 16 88624347 88632053 - MGP_AJ_P0045162 Atp5o protein_coding nonsense_mediated_decay MGP_AJ_T0045163.1 MGP_AJ_G0023016.1 mouse_genomes_project 16 88624404 88632062 - MGP_AJ_P0045163 Atp5o protein_coding unknown_likely_coding MGP_AJ_T0045164.1 MGP_AJ_G0023016.1 mouse_genomes_project 16 88624439 88631781 - Atp5o protein_coding processed_transcript MGP_AJ_T0045165.1 MGP_AJ_G0023016.1 mouse_genomes_project 16 88627365 88631925 - Atp5o protein_coding processed_transcript MGP_AJ_T0045166.1 MGP_AJ_G0023016.1 mouse_genomes_project 16 88628667 88632058 - Atp5o protein_coding retained_intron MGP_AJ_T0043373.1 MGP_AJ_G0022536.1 mouse_genomes_project 16 13656958 13686781 + MGP_AJ_P0043373 Hic2 protein_coding protein_coding MGP_AJ_T0043374.1 MGP_AJ_G0022536.1 mouse_genomes_project 16 13657050 13684946 + MGP_AJ_P0043374 Hic2 protein_coding protein_coding MGP_AJ_T0100879.1 MGP_AJ_G0038845.1 mouse_genomes_project 16 34842666 34842799 + Gm25617 snoRNA snoRNA MGP_AJ_T0045019.1 MGP_AJ_G0022992.1 mouse_genomes_project 16 86895205 86900785 + MGP_AJ_P0045019 Sod1 protein_coding protein_coding MGP_AJ_T0100869.1 MGP_AJ_G0038835.1 mouse_genomes_project 16 19679257 19679386 + Gm26447 snoRNA snoRNA MGP_AJ_T0100865.1 MGP_AJ_G0038831.1 mouse_genomes_project 16 17161144 17161219 + Snord66 snoRNA snoRNA MGP_AJ_T0044824.1 MGP_AJ_G0022912.1 mouse_genomes_project 16 62252832 62266507 + MGP_AJ_P0044824 Pou1f1 protein_coding protein_coding MGP_AJ_T0044825.1 MGP_AJ_G0022912.1 mouse_genomes_project 16 62252833 62257865 + Pou1f1 protein_coding retained_intron MGP_AJ_T0044826.1 MGP_AJ_G0022912.1 mouse_genomes_project 16 62252833 62267101 + MGP_AJ_P0044826 Pou1f1 protein_coding protein_coding MGP_AJ_T0044827.1 MGP_AJ_G0022912.1 mouse_genomes_project 16 62252869 62266439 + MGP_AJ_P0044827 Pou1f1 protein_coding protein_coding MGP_AJ_T0044828.1 MGP_AJ_G0022912.1 mouse_genomes_project 16 62255598 62266300 + MGP_AJ_P0044828 Pou1f1 protein_coding protein_coding MGP_AJ_T0099617.1 MGP_AJ_G0037583.1 mouse_genomes_project 16 35612446 35612545 + Gm22500 snRNA snRNA MGP_AJ_T0045182.1 MGP_AJ_G0023027.1 mouse_genomes_project 16 89309532 89537968 - MGP_AJ_P0045182 Runx1 protein_coding protein_coding MGP_AJ_T0045183.1 MGP_AJ_G0023027.1 mouse_genomes_project 16 89311742 89405840 - MGP_AJ_P0045183 Runx1 protein_coding protein_coding MGP_AJ_T0045184.1 MGP_AJ_G0023027.1 mouse_genomes_project 16 89313491 89404637 - MGP_AJ_P0045184 Runx1 protein_coding protein_coding MGP_AJ_T0045185.1 MGP_AJ_G0023027.1 mouse_genomes_project 16 89395472 89404007 - MGP_AJ_P0045185 Runx1 protein_coding protein_coding MGP_AJ_T0045186.1 MGP_AJ_G0023027.1 mouse_genomes_project 16 89395505 89405837 - Runx1 protein_coding retained_intron MGP_AJ_T0045187.1 MGP_AJ_G0023027.1 mouse_genomes_project 16 89404103 89537597 - MGP_AJ_P0045187 Runx1 protein_coding protein_coding MGP_AJ_T0045188.1 MGP_AJ_G0023027.1 mouse_genomes_project 16 89527246 89537893 - MGP_AJ_P0045188 Runx1 protein_coding protein_coding MGP_AJ_T0017500.1 MGP_AJ_G0015296.1 mouse_genomes_project 16 55114966 55118348 - 4930461C15Rik processed_transcript processed_transcript MGP_AJ_T0006830.1 MGP_AJ_G0005626.1 mouse_genomes_project 16 7592128 7607373 + 4930509G22Rik lincRNA lincRNA MGP_AJ_T0000965.1 MGP_AJ_G0000897.1 mouse_genomes_project 16 74113539 74116111 - TEC TEC MGP_AJ_T0010161.1 MGP_AJ_G0008283.1 mouse_genomes_project 16 88221382 88221484 - Mir6367 miRNA miRNA MGP_AJ_T0044820.1 MGP_AJ_G0022909.1 mouse_genomes_project 16 61543287 61607022 - MGP_AJ_P0044820 protein_coding protein_coding MGP_AJ_T0043206.1 MGP_AJ_G0022499.1 mouse_genomes_project 16 10241411 10314182 - MGP_AJ_P0043206 Pdxdc1 protein_coding protein_coding MGP_AJ_T0043207.1 MGP_AJ_G0022499.1 mouse_genomes_project 16 10241841 10248575 - Pdxdc1 protein_coding processed_transcript MGP_AJ_T0043209.1 MGP_AJ_G0022499.1 mouse_genomes_project 16 10242402 10253678 - Pdxdc1 protein_coding processed_transcript MGP_AJ_T0043210.1 MGP_AJ_G0022499.1 mouse_genomes_project 16 10242407 10314076 - MGP_AJ_P0043210 Pdxdc1 protein_coding protein_coding MGP_AJ_T0043211.1 MGP_AJ_G0022499.1 mouse_genomes_project 16 10242523 10245329 - Pdxdc1 protein_coding processed_transcript MGP_AJ_T0043212.1 MGP_AJ_G0022499.1 mouse_genomes_project 16 10243839 10314037 - Pdxdc1 protein_coding retained_intron MGP_AJ_T0043213.1 MGP_AJ_G0022499.1 mouse_genomes_project 16 10244054 10247584 - Pdxdc1 protein_coding processed_transcript MGP_AJ_T0043214.1 MGP_AJ_G0022499.1 mouse_genomes_project 16 10245203 10248580 - Pdxdc1 protein_coding processed_transcript MGP_AJ_T0043215.1 MGP_AJ_G0022499.1 mouse_genomes_project 16 10245880 10246609 - Pdxdc1 protein_coding retained_intron MGP_AJ_T0043216.1 MGP_AJ_G0022499.1 mouse_genomes_project 16 10255958 10314110 - MGP_AJ_P0043216 Pdxdc1 protein_coding protein_coding MGP_AJ_T0043217.1 MGP_AJ_G0022499.1 mouse_genomes_project 16 10257522 10314186 - MGP_AJ_P0043217 Pdxdc1 protein_coding protein_coding MGP_AJ_T0043218.1 MGP_AJ_G0022499.1 mouse_genomes_project 16 10267810 10283998 - Pdxdc1 protein_coding retained_intron MGP_AJ_T0043219.1 MGP_AJ_G0022499.1 mouse_genomes_project 16 10283828 10314040 - Pdxdc1 protein_coding processed_transcript MGP_AJ_T0043220.1 MGP_AJ_G0022499.1 mouse_genomes_project 16 10289459 10314030 - Pdxdc1 protein_coding processed_transcript MGP_AJ_T0043221.1 MGP_AJ_G0022499.1 mouse_genomes_project 16 10296080 10314035 - Pdxdc1 protein_coding retained_intron MGP_AJ_T0043009.1 MGP_AJ_G0022447.1 mouse_genomes_project 16 1487049 1524752 + MGP_AJ_P0043009 Sec14l5 protein_coding protein_coding MGP_AJ_T0011415.1 MGP_AJ_G0009537.1 mouse_genomes_project 16 77953896 77954209 - Gm26023 misc_RNA misc_RNA MGP_AJ_T0043200.1 MGP_AJ_G0022498.1 mouse_genomes_project 16 10227948 10240699 + Ntan1 protein_coding processed_transcript MGP_AJ_T0043201.1 MGP_AJ_G0022498.1 mouse_genomes_project 16 10227970 10240816 + Ntan1 protein_coding processed_transcript MGP_AJ_T0043202.1 MGP_AJ_G0022498.1 mouse_genomes_project 16 10227977 10243696 + Ntan1 protein_coding processed_transcript MGP_AJ_T0043203.1 MGP_AJ_G0022498.1 mouse_genomes_project 16 10228015 10235820 + Ntan1 protein_coding retained_intron MGP_AJ_T0043204.1 MGP_AJ_G0022498.1 mouse_genomes_project 16 10228027 10243562 + MGP_AJ_P0043204 Ntan1 protein_coding protein_coding MGP_AJ_T0043205.1 MGP_AJ_G0022498.1 mouse_genomes_project 16 10239871 10240962 + Ntan1 protein_coding retained_intron MGP_AJ_T0043208.1 MGP_AJ_G0022498.1 mouse_genomes_project 16 10242329 10243414 + Ntan1 protein_coding retained_intron MGP_AJ_T0043837.1 MGP_AJ_G0022637.1 mouse_genomes_project 16 19489553 19500165 + MGP_AJ_P0043837 Hrg protein_coding protein_coding MGP_AJ_T0013153.1 MGP_AJ_G0011248.1 mouse_genomes_project 16 22325855 22326776 + processed_pseudogene processed_pseudogene MGP_AJ_T0006889.1 MGP_AJ_G0005670.1 mouse_genomes_project 16 92536240 92538529 - 2810404F17Rik lincRNA lincRNA MGP_AJ_T0042927.1 MGP_AJ_G0022426.1 mouse_genomes_project 16 872081 886838 - MGP_AJ_P0042927 Tfap4 protein_coding protein_coding MGP_AJ_T0043122.1 MGP_AJ_G0022481.1 mouse_genomes_project 16 7478423 7487234 + MGP_AJ_P0043122 Snn protein_coding protein_coding MGP_AJ_T0098415.1 MGP_AJ_G0036399.1 mouse_genomes_project 16 85621569 85621805 - pseudogene pseudogene MGP_AJ_T0010133.1 MGP_AJ_G0008255.1 mouse_genomes_project 16 28891172 28891306 - Mir1946a miRNA miRNA MGP_AJ_T0044566.1 MGP_AJ_G0022822.1 mouse_genomes_project 16 42511283 42524589 - MGP_AJ_P0044566 Tagln3 protein_coding protein_coding MGP_AJ_T0010131.1 MGP_AJ_G0008253.1 mouse_genomes_project 16 25195120 25195229 - Mir690 miRNA miRNA MGP_AJ_T0042907.1 MGP_AJ_G0022422.1 mouse_genomes_project 16 367524 407850 - MGP_AJ_P0042907 Trap1 protein_coding protein_coding MGP_AJ_T0042908.1 MGP_AJ_G0022422.1 mouse_genomes_project 16 367693 372252 - Trap1 protein_coding processed_transcript MGP_AJ_T0042909.1 MGP_AJ_G0022422.1 mouse_genomes_project 16 384063 407798 - MGP_AJ_P0042909 Trap1 protein_coding nonsense_mediated_decay MGP_AJ_T0042910.1 MGP_AJ_G0022422.1 mouse_genomes_project 16 393804 407850 - Trap1 protein_coding retained_intron MGP_AJ_T0044976.1 MGP_AJ_G0022965.1 mouse_genomes_project 16 85527672 85528165 - MGP_AJ_P0044976 Krtap19-1 protein_coding protein_coding MGP_AJ_T0100887.1 MGP_AJ_G0038853.1 mouse_genomes_project 16 50133858 50133966 - Gm22459 snoRNA snoRNA MGP_AJ_T0044602.1 MGP_AJ_G0022834.1 mouse_genomes_project 16 45629573 45631483 + MGP_AJ_P0044602 Retnla protein_coding protein_coding MGP_AJ_T0000975.1 MGP_AJ_G0000907.1 mouse_genomes_project 16 87947529 87948330 + TEC TEC MGP_AJ_T0045340.1 MGP_AJ_G0023052.1 mouse_genomes_project 16 92975744 93056510 + MGP_AJ_P0045340 B3galt5 protein_coding protein_coding MGP_AJ_T0045341.1 MGP_AJ_G0023052.1 mouse_genomes_project 16 93009304 93050425 + B3galt5 protein_coding processed_transcript MGP_AJ_T0045342.1 MGP_AJ_G0023052.1 mouse_genomes_project 16 93009441 93050426 + B3galt5 protein_coding processed_transcript MGP_AJ_T0045343.1 MGP_AJ_G0023052.1 mouse_genomes_project 16 93016551 93056508 + MGP_AJ_P0045343 B3galt5 protein_coding protein_coding MGP_AJ_T0100884.1 MGP_AJ_G0038850.1 mouse_genomes_project 16 43031041 43031173 + Gm26297 snoRNA snoRNA MGP_AJ_T0011414.1 MGP_AJ_G0009536.1 mouse_genomes_project 16 65647441 65647727 + Gm23591 misc_RNA misc_RNA MGP_AJ_T0045350.1 MGP_AJ_G0023054.1 mouse_genomes_project 16 93173945 93195270 - MGP_AJ_P0045350 Itgb2l protein_coding protein_coding MGP_AJ_T0045351.1 MGP_AJ_G0023054.1 mouse_genomes_project 16 93173949 93195265 - MGP_AJ_P0045351 Itgb2l protein_coding nonsense_mediated_decay MGP_AJ_T0045352.1 MGP_AJ_G0023054.1 mouse_genomes_project 16 93174033 93195263 - MGP_AJ_P0045352 Itgb2l protein_coding protein_coding MGP_AJ_T0045353.1 MGP_AJ_G0023054.1 mouse_genomes_project 16 93178387 93180802 - Itgb2l protein_coding processed_transcript MGP_AJ_T0010152.1 MGP_AJ_G0008274.1 mouse_genomes_project 16 70690409 70690507 + Gm24272 miRNA miRNA MGP_AJ_T0043244.1 MGP_AJ_G0022507.1 mouse_genomes_project 16 10768468 10883787 + MGP_AJ_P0043244 Abcc1 protein_coding nonsense_mediated_decay MGP_AJ_T0043245.1 MGP_AJ_G0022507.1 mouse_genomes_project 16 10768468 10883787 + MGP_AJ_P0043245 Abcc1 protein_coding nonsense_mediated_decay MGP_AJ_T0043246.1 MGP_AJ_G0022507.1 mouse_genomes_project 16 10768468 10883787 + MGP_AJ_P0043246 Abcc1 protein_coding nonsense_mediated_decay MGP_AJ_T0043247.1 MGP_AJ_G0022507.1 mouse_genomes_project 16 10768470 10885622 + MGP_AJ_P0043247 Abcc1 protein_coding protein_coding MGP_AJ_T0043248.1 MGP_AJ_G0022507.1 mouse_genomes_project 16 10768486 10805024 + MGP_AJ_P0043248 Abcc1 protein_coding protein_coding MGP_AJ_T0043249.1 MGP_AJ_G0022507.1 mouse_genomes_project 16 10768491 10813668 + MGP_AJ_P0043249 Abcc1 protein_coding protein_coding MGP_AJ_T0043250.1 MGP_AJ_G0022507.1 mouse_genomes_project 16 10772626 10800062 + MGP_AJ_P0043250 Abcc1 protein_coding protein_coding MGP_AJ_T0043251.1 MGP_AJ_G0022507.1 mouse_genomes_project 16 10802571 10802946 + Abcc1 protein_coding processed_transcript MGP_AJ_T0043252.1 MGP_AJ_G0022507.1 mouse_genomes_project 16 10810966 10829363 + Abcc1 protein_coding retained_intron MGP_AJ_T0043253.1 MGP_AJ_G0022507.1 mouse_genomes_project 16 10870915 10878121 + Abcc1 protein_coding retained_intron MGP_AJ_T0043254.1 MGP_AJ_G0022507.1 mouse_genomes_project 16 10870920 10883927 + Abcc1 protein_coding retained_intron MGP_AJ_T0045230.1 MGP_AJ_G0023039.1 mouse_genomes_project 16 91108180 91207478 + MGP_AJ_P0045230 Ttc3 protein_coding protein_coding MGP_AJ_T0045231.1 MGP_AJ_G0023039.1 mouse_genomes_project 16 91108301 91180873 + MGP_AJ_P0045231 Ttc3 protein_coding protein_coding MGP_AJ_T0045232.1 MGP_AJ_G0023039.1 mouse_genomes_project 16 91108305 91142042 + Ttc3 protein_coding retained_intron MGP_AJ_T0045233.1 MGP_AJ_G0023039.1 mouse_genomes_project 16 91108305 91172551 + MGP_AJ_P0045233 Ttc3 protein_coding protein_coding MGP_AJ_T0045234.1 MGP_AJ_G0023039.1 mouse_genomes_project 16 91108308 91180878 + MGP_AJ_P0045234 Ttc3 protein_coding protein_coding MGP_AJ_T0045235.1 MGP_AJ_G0023039.1 mouse_genomes_project 16 91108311 91156929 + MGP_AJ_P0045235 Ttc3 protein_coding protein_coding MGP_AJ_T0045236.1 MGP_AJ_G0023039.1 mouse_genomes_project 16 91108312 91134638 + MGP_AJ_P0045236 Ttc3 protein_coding nonsense_mediated_decay MGP_AJ_T0045237.1 MGP_AJ_G0023039.1 mouse_genomes_project 16 91108313 91154596 + Ttc3 protein_coding processed_transcript MGP_AJ_T0045238.1 MGP_AJ_G0023039.1 mouse_genomes_project 16 91108313 91160532 + MGP_AJ_P0045238 Ttc3 protein_coding protein_coding MGP_AJ_T0045239.1 MGP_AJ_G0023039.1 mouse_genomes_project 16 91108313 91156857 + MGP_AJ_P0045239 Ttc3 protein_coding nonsense_mediated_decay MGP_AJ_T0045240.1 MGP_AJ_G0023039.1 mouse_genomes_project 16 91108319 91180885 + MGP_AJ_P0045240 Ttc3 protein_coding nonsense_mediated_decay MGP_AJ_T0045241.1 MGP_AJ_G0023039.1 mouse_genomes_project 16 91108329 91147946 + Ttc3 protein_coding processed_transcript MGP_AJ_T0045242.1 MGP_AJ_G0023039.1 mouse_genomes_project 16 91108329 91124927 + MGP_AJ_P0045242 Ttc3 protein_coding nonsense_mediated_decay MGP_AJ_T0045243.1 MGP_AJ_G0023039.1 mouse_genomes_project 16 91108329 91127821 + MGP_AJ_P0045243 Ttc3 protein_coding nonsense_mediated_decay MGP_AJ_T0045244.1 MGP_AJ_G0023039.1 mouse_genomes_project 16 91108329 91180875 + MGP_AJ_P0045244 Ttc3 protein_coding protein_coding MGP_AJ_T0045245.1 MGP_AJ_G0023039.1 mouse_genomes_project 16 91108342 91154194 + MGP_AJ_P0045245 Ttc3 protein_coding protein_coding MGP_AJ_T0045246.1 MGP_AJ_G0023039.1 mouse_genomes_project 16 91108343 91180885 + MGP_AJ_P0045246 Ttc3 protein_coding protein_coding MGP_AJ_T0045247.1 MGP_AJ_G0023039.1 mouse_genomes_project 16 91108343 91180885 + MGP_AJ_P0045247 Ttc3 protein_coding protein_coding MGP_AJ_T0045248.1 MGP_AJ_G0023039.1 mouse_genomes_project 16 91108358 91166101 + MGP_AJ_P0045248 Ttc3 protein_coding protein_coding MGP_AJ_T0045249.1 MGP_AJ_G0023039.1 mouse_genomes_project 16 91108359 91141578 + MGP_AJ_P0045249 Ttc3 protein_coding protein_coding MGP_AJ_T0045250.1 MGP_AJ_G0023039.1 mouse_genomes_project 16 91108359 91149076 + MGP_AJ_P0045250 Ttc3 protein_coding protein_coding MGP_AJ_T0045251.1 MGP_AJ_G0023039.1 mouse_genomes_project 16 91108360 91150345 + Ttc3 protein_coding processed_transcript MGP_AJ_T0045252.1 MGP_AJ_G0023039.1 mouse_genomes_project 16 91108360 91134882 + MGP_AJ_P0045252 Ttc3 protein_coding protein_coding MGP_AJ_T0045253.1 MGP_AJ_G0023039.1 mouse_genomes_project 16 91108385 91158516 + MGP_AJ_P0045253 Ttc3 protein_coding protein_coding MGP_AJ_T0045254.1 MGP_AJ_G0023039.1 mouse_genomes_project 16 91163383 91171360 + MGP_AJ_P0045254 Ttc3 protein_coding protein_coding MGP_AJ_T0045255.1 MGP_AJ_G0023039.1 mouse_genomes_project 16 91178298 91186951 + Ttc3 protein_coding retained_intron MGP_AJ_T0045256.1 MGP_AJ_G0023039.1 mouse_genomes_project 16 91189330 91198282 + MGP_AJ_P0045256 Ttc3 protein_coding nonsense_mediated_decay MGP_AJ_T0045257.1 MGP_AJ_G0023039.1 mouse_genomes_project 16 91195601 91206250 + Ttc3 protein_coding retained_intron MGP_AJ_T0045258.1 MGP_AJ_G0023039.1 mouse_genomes_project 16 91203416 91207141 + Ttc3 protein_coding retained_intron MGP_AJ_T0045259.1 MGP_AJ_G0023039.1 mouse_genomes_project 16 91204777 91206473 + Ttc3 protein_coding retained_intron MGP_AJ_T0098604.1 MGP_AJ_G0036588.1 mouse_genomes_project 16 5239503 5239593 - Gm22224 rRNA rRNA MGP_AJ_T0044964.1 MGP_AJ_G0022955.1 mouse_genomes_project 16 85307576 85308549 - MGP_AJ_P0044964 Krtap26-1 protein_coding protein_coding MGP_AJ_T0043355.1 MGP_AJ_G0022531.1 mouse_genomes_project 16 13544265 13547316 - MGP_AJ_P0043355 Sdf2l1 protein_coding protein_coding MGP_AJ_T0100900.1 MGP_AJ_G0038866.1 mouse_genomes_project 16 74947969 74948100 + Gm25916 snoRNA snoRNA MGP_AJ_T0045274.1 MGP_AJ_G0023043.1 mouse_genomes_project 16 91990090 92032416 + MGP_AJ_P0045274 Kcnj15 protein_coding protein_coding MGP_AJ_T0045275.1 MGP_AJ_G0023043.1 mouse_genomes_project 16 91990090 92031828 + MGP_AJ_P0045275 Kcnj15 protein_coding protein_coding MGP_AJ_T0045276.1 MGP_AJ_G0023043.1 mouse_genomes_project 16 91990090 92032416 + MGP_AJ_P0045276 Kcnj15 protein_coding protein_coding MGP_AJ_T0045277.1 MGP_AJ_G0023043.1 mouse_genomes_project 16 91990090 92032416 + MGP_AJ_P0045277 Kcnj15 protein_coding protein_coding MGP_AJ_T0045278.1 MGP_AJ_G0023043.1 mouse_genomes_project 16 91990090 92030712 + MGP_AJ_P0045278 Kcnj15 protein_coding protein_coding MGP_AJ_T0045279.1 MGP_AJ_G0023043.1 mouse_genomes_project 16 91990183 92032465 + MGP_AJ_P0045279 Kcnj15 protein_coding protein_coding MGP_AJ_T0045280.1 MGP_AJ_G0023043.1 mouse_genomes_project 16 91990191 92028244 + MGP_AJ_P0045280 Kcnj15 protein_coding protein_coding MGP_AJ_T0045281.1 MGP_AJ_G0023043.1 mouse_genomes_project 16 91990191 92027909 + MGP_AJ_P0045281 Kcnj15 protein_coding protein_coding MGP_AJ_T0045282.1 MGP_AJ_G0023043.1 mouse_genomes_project 16 91990215 92027886 + MGP_AJ_P0045282 Kcnj15 protein_coding protein_coding MGP_AJ_T0045283.1 MGP_AJ_G0023043.1 mouse_genomes_project 16 91990391 92032416 + MGP_AJ_P0045283 Kcnj15 protein_coding protein_coding MGP_AJ_T0045284.1 MGP_AJ_G0023043.1 mouse_genomes_project 16 91990546 92024031 + Kcnj15 protein_coding processed_transcript MGP_AJ_T0045285.1 MGP_AJ_G0023043.1 mouse_genomes_project 16 91990607 92032416 + MGP_AJ_P0045285 Kcnj15 protein_coding protein_coding MGP_AJ_T0045286.1 MGP_AJ_G0023043.1 mouse_genomes_project 16 92011465 92024094 + MGP_AJ_P0045286 Kcnj15 protein_coding protein_coding MGP_AJ_T0044969.1 MGP_AJ_G0022960.1 mouse_genomes_project 16 85420809 85421754 + MGP_AJ_P0044969 2310034C09Rik protein_coding protein_coding MGP_AJ_T0011411.1 MGP_AJ_G0009533.1 mouse_genomes_project 16 44386344 44386658 - Gm25318 misc_RNA misc_RNA MGP_AJ_T0100888.1 MGP_AJ_G0038854.1 mouse_genomes_project 16 51080964 51081096 + Gm25853 snoRNA snoRNA MGP_AJ_T0045069.1 MGP_AJ_G0023004.1 mouse_genomes_project 16 87917864 87920992 + MGP_AJ_P0045069 Olig2 protein_coding protein_coding MGP_AJ_T0043523.1 MGP_AJ_G0022567.1 mouse_genomes_project 16 14692526 14697350 + Trmt2a protein_coding retained_intron MGP_AJ_T0043524.1 MGP_AJ_G0022567.1 mouse_genomes_project 16 14692730 14697350 + MGP_AJ_P0043524 Trmt2a protein_coding protein_coding MGP_AJ_T0043525.1 MGP_AJ_G0022567.1 mouse_genomes_project 16 14692730 14698620 + MGP_AJ_P0043525 Trmt2a protein_coding protein_coding MGP_AJ_T0043526.1 MGP_AJ_G0022567.1 mouse_genomes_project 16 14692849 14697350 + Trmt2a protein_coding retained_intron MGP_AJ_T0043527.1 MGP_AJ_G0022567.1 mouse_genomes_project 16 14692856 14697356 + Trmt2a protein_coding retained_intron MGP_AJ_T0043528.1 MGP_AJ_G0022567.1 mouse_genomes_project 16 14692856 14697346 + Trmt2a protein_coding retained_intron MGP_AJ_T0043529.1 MGP_AJ_G0022567.1 mouse_genomes_project 16 14692909 14697350 + MGP_AJ_P0043529 Trmt2a protein_coding protein_coding MGP_AJ_T0043530.1 MGP_AJ_G0022567.1 mouse_genomes_project 16 14693868 14696960 + MGP_AJ_P0043530 Trmt2a protein_coding protein_coding MGP_AJ_T0043531.1 MGP_AJ_G0022567.1 mouse_genomes_project 16 14695269 14697349 + MGP_AJ_P0043531 Trmt2a protein_coding protein_coding MGP_AJ_T0043532.1 MGP_AJ_G0022567.1 mouse_genomes_project 16 14696068 14697079 + Trmt2a protein_coding retained_intron MGP_AJ_T0044375.1 MGP_AJ_G0022780.1 mouse_genomes_project 16 35137539 35144819 - MGP_AJ_P0044375 Adprh protein_coding protein_coding MGP_AJ_T0100903.1 MGP_AJ_G0038869.1 mouse_genomes_project 16 81427809 81427936 + Gm26153 snoRNA snoRNA MGP_AJ_T0010108.1 MGP_AJ_G0008230.1 mouse_genomes_project 16 6677459 6677531 + Gm22932 miRNA miRNA MGP_AJ_T0010158.1 MGP_AJ_G0008280.1 mouse_genomes_project 16 74753125 74753236 + Gm25025 miRNA miRNA MGP_AJ_T0100859.1 MGP_AJ_G0038825.1 mouse_genomes_project 16 4751065 4751209 + Gm24579 snoRNA snoRNA MGP_AJ_T0044560.1 MGP_AJ_G0022820.1 mouse_genomes_project 16 42426162 42453343 - MGP_AJ_P0044560 BC016579 protein_coding protein_coding MGP_AJ_T0043496.1 MGP_AJ_G0022559.1 mouse_genomes_project 16 14349168 14351121 - MGP_AJ_P0043496 Gsc2 protein_coding protein_coding MGP_AJ_T0098607.1 MGP_AJ_G0036591.1 mouse_genomes_project 16 26733119 26733222 - n-R5s32 rRNA rRNA MGP_AJ_T0044489.1 MGP_AJ_G0022804.1 mouse_genomes_project 16 41204321 41213827 + Cfap44 protein_coding retained_intron MGP_AJ_T0044490.1 MGP_AJ_G0022804.1 mouse_genomes_project 16 41204324 41294891 + MGP_AJ_P0044490 Cfap44 protein_coding protein_coding MGP_AJ_T0044491.1 MGP_AJ_G0022804.1 mouse_genomes_project 16 41204347 41210888 + Cfap44 protein_coding retained_intron MGP_AJ_T0044492.1 MGP_AJ_G0022804.1 mouse_genomes_project 16 41210314 41294557 + MGP_AJ_P0044492 Cfap44 protein_coding protein_coding MGP_AJ_T0044493.1 MGP_AJ_G0022804.1 mouse_genomes_project 16 41217507 41239329 + Cfap44 protein_coding retained_intron MGP_AJ_T0044494.1 MGP_AJ_G0022804.1 mouse_genomes_project 16 41241371 41246678 + Cfap44 protein_coding processed_transcript MGP_AJ_T0044495.1 MGP_AJ_G0022804.1 mouse_genomes_project 16 41265742 41294557 + MGP_AJ_P0044495 Cfap44 protein_coding protein_coding MGP_AJ_T0044496.1 MGP_AJ_G0022804.1 mouse_genomes_project 16 41282294 41294891 + Cfap44 protein_coding retained_intron MGP_AJ_T0043795.1 MGP_AJ_G0022622.1 mouse_genomes_project 16 18175808 18221870 - MGP_AJ_P0043795 2510009E07Rik protein_coding protein_coding MGP_AJ_T0044440.1 MGP_AJ_G0022794.1 mouse_genomes_project 16 40548241 40618621 + MGP_AJ_P0044440 Drd3 protein_coding protein_coding MGP_AJ_T0044810.1 MGP_AJ_G0022903.1 mouse_genomes_project 16 59559235 59611924 - MGP_AJ_P0044810 Arl13b protein_coding protein_coding MGP_AJ_T0044811.1 MGP_AJ_G0022903.1 mouse_genomes_project 16 59560900 59568366 - Arl13b protein_coding processed_transcript MGP_AJ_T0044813.1 MGP_AJ_G0022903.1 mouse_genomes_project 16 59591093 59611924 - Arl13b protein_coding retained_intron MGP_AJ_T0013150.1 MGP_AJ_G0011245.1 mouse_genomes_project 16 19751398 19751960 + processed_pseudogene processed_pseudogene MGP_AJ_T0017484.1 MGP_AJ_G0015286.1 mouse_genomes_project 16 1594451 1628810 + Gm15983 processed_transcript processed_transcript MGP_AJ_T0100875.1 MGP_AJ_G0038841.1 mouse_genomes_project 16 28866581 28866725 - Gm25848 snoRNA snoRNA MGP_AJ_T0042948.1 MGP_AJ_G0022431.1 mouse_genomes_project 16 966660 1013600 + Dnaja3 protein_coding processed_transcript MGP_AJ_T0042952.1 MGP_AJ_G0022431.1 mouse_genomes_project 16 1010377 1034017 + MGP_AJ_P0042952 Dnaja3 protein_coding protein_coding MGP_AJ_T0042953.1 MGP_AJ_G0022431.1 mouse_genomes_project 16 1010403 1034017 + MGP_AJ_P0042953 Dnaja3 protein_coding protein_coding MGP_AJ_T0042954.1 MGP_AJ_G0022431.1 mouse_genomes_project 16 1010421 1020482 + Dnaja3 protein_coding retained_intron MGP_AJ_T0098613.1 MGP_AJ_G0036597.1 mouse_genomes_project 16 81507884 81507982 + Gm25908 rRNA rRNA MGP_AJ_T0010114.1 MGP_AJ_G0008236.1 mouse_genomes_project 16 10538010 10538076 - Gm27671 miRNA miRNA MGP_AJ_T0044033.1 MGP_AJ_G0022693.1 mouse_genomes_project 16 28714584 28729362 - MGP_AJ_P0044033 Pigx protein_coding protein_coding MGP_AJ_T0044034.1 MGP_AJ_G0022693.1 mouse_genomes_project 16 28714586 28718312 - Pigx protein_coding processed_transcript MGP_AJ_T0044035.1 MGP_AJ_G0022693.1 mouse_genomes_project 16 28714590 28729339 - Pigx protein_coding processed_transcript MGP_AJ_T0044036.1 MGP_AJ_G0022693.1 mouse_genomes_project 16 28714590 28729373 - MGP_AJ_P0044036 Pigx protein_coding protein_coding MGP_AJ_T0044037.1 MGP_AJ_G0022693.1 mouse_genomes_project 16 28714604 28729363 - MGP_AJ_P0044037 Pigx protein_coding protein_coding MGP_AJ_T0044038.1 MGP_AJ_G0022693.1 mouse_genomes_project 16 28714625 28729342 - MGP_AJ_P0044038 Pigx protein_coding nonsense_mediated_decay MGP_AJ_T0044039.1 MGP_AJ_G0022693.1 mouse_genomes_project 16 28715454 28729328 - MGP_AJ_P0044039 Pigx protein_coding nonsense_mediated_decay MGP_AJ_T0044040.1 MGP_AJ_G0022693.1 mouse_genomes_project 16 28717452 28729331 - MGP_AJ_P0044040 Pigx protein_coding nonsense_mediated_decay MGP_AJ_T0044041.1 MGP_AJ_G0022693.1 mouse_genomes_project 16 28717658 28729335 - MGP_AJ_P0044041 Pigx protein_coding nonsense_mediated_decay MGP_AJ_T0044042.1 MGP_AJ_G0022693.1 mouse_genomes_project 16 28727065 28729346 - MGP_AJ_P0044042 Pigx protein_coding nonsense_mediated_decay MGP_AJ_T0013152.1 MGP_AJ_G0011247.1 mouse_genomes_project 16 20299771 20301358 - processed_pseudogene processed_pseudogene MGP_AJ_T0017489.1 MGP_AJ_G0015290.1 mouse_genomes_project 16 19085843 19088440 + Gm15651 processed_transcript processed_transcript MGP_AJ_T0043533.1 MGP_AJ_G0022568.1 mouse_genomes_project 16 14697795 14733313 - MGP_AJ_P0043533 Dgcr8 protein_coding protein_coding MGP_AJ_T0043534.1 MGP_AJ_G0022568.1 mouse_genomes_project 16 14697804 14733316 - MGP_AJ_P0043534 Dgcr8 protein_coding protein_coding MGP_AJ_T0043535.1 MGP_AJ_G0022568.1 mouse_genomes_project 16 14715389 14728630 - Dgcr8 protein_coding retained_intron MGP_AJ_T0043536.1 MGP_AJ_G0022568.1 mouse_genomes_project 16 14715572 14724313 - Dgcr8 protein_coding retained_intron MGP_AJ_T0043537.1 MGP_AJ_G0022568.1 mouse_genomes_project 16 14731649 14733237 - Dgcr8 protein_coding processed_transcript MGP_AJ_T0100878.1 MGP_AJ_G0038844.1 mouse_genomes_project 16 34842666 34842798 + Gm25617 snoRNA snoRNA MGP_AJ_T0010109.1 MGP_AJ_G0008231.1 mouse_genomes_project 16 7670268 7670346 - Mir1945 miRNA miRNA MGP_AJ_T0017485.1 MGP_AJ_G0015287.1 mouse_genomes_project 16 14509461 14510610 + Gm15954 processed_transcript processed_transcript MGP_AJ_T0044982.1 MGP_AJ_G0022971.1 mouse_genomes_project 16 85591257 85591718 - MGP_AJ_P0044982 Krtap19-9b protein_coding protein_coding MGP_AJ_T0044830.1 MGP_AJ_G0022914.1 mouse_genomes_project 16 62540066 62589380 + MGP_AJ_P0044830 Vgll3 protein_coding protein_coding MGP_AJ_T0044831.1 MGP_AJ_G0022914.1 mouse_genomes_project 16 62540066 62587038 + MGP_AJ_P0044831 Vgll3 protein_coding unknown_likely_coding MGP_AJ_T0043260.1 MGP_AJ_G0022511.1 mouse_genomes_project 16 11298089 11316060 + MGP_AJ_P0043260 Efcab1 protein_coding protein_coding MGP_AJ_T0013189.1 MGP_AJ_G0011284.1 mouse_genomes_project 16 58247613 58248124 + processed_pseudogene processed_pseudogene MGP_AJ_T0006871.1 MGP_AJ_G0005659.1 mouse_genomes_project 16 56262176 56268325 - 1700022E09Rik lincRNA lincRNA MGP_AJ_T0006872.1 MGP_AJ_G0005659.1 mouse_genomes_project 16 56266140 56268359 - 1700022E09Rik lincRNA lincRNA MGP_AJ_T0044663.1 MGP_AJ_G0022852.1 mouse_genomes_project 16 52748004 52762180 - MGP_AJ_P0044663 Pcnp protein_coding unknown_likely_coding MGP_AJ_T0044664.1 MGP_AJ_G0022852.1 mouse_genomes_project 16 52748004 52762146 - MGP_AJ_P0044664 Pcnp protein_coding protein_coding MGP_AJ_T0044665.1 MGP_AJ_G0022852.1 mouse_genomes_project 16 52748014 52762176 - MGP_AJ_P0044665 Pcnp protein_coding nonsense_mediated_decay MGP_AJ_T0044666.1 MGP_AJ_G0022852.1 mouse_genomes_project 16 52749305 52762166 - Pcnp protein_coding processed_transcript MGP_AJ_T0044667.1 MGP_AJ_G0022852.1 mouse_genomes_project 16 52749504 52762156 - MGP_AJ_P0044667 Pcnp protein_coding nonsense_mediated_decay MGP_AJ_T0044668.1 MGP_AJ_G0022852.1 mouse_genomes_project 16 52749537 52762186 - Pcnp protein_coding processed_transcript MGP_AJ_T0044669.1 MGP_AJ_G0022852.1 mouse_genomes_project 16 52749691 52757148 - MGP_AJ_P0044669 Pcnp protein_coding protein_coding MGP_AJ_T0044670.1 MGP_AJ_G0022852.1 mouse_genomes_project 16 52750631 52762176 - MGP_AJ_P0044670 Pcnp protein_coding protein_coding MGP_AJ_T0044985.1 MGP_AJ_G0022974.1 mouse_genomes_project 16 85673793 85674363 + MGP_AJ_P0044985 Gm10229 protein_coding protein_coding MGP_AJ_T0006852.1 MGP_AJ_G0005645.1 mouse_genomes_project 16 32178371 32184617 - 1600019K03Rik lincRNA lincRNA MGP_AJ_T0017527.1 MGP_AJ_G0015306.1 mouse_genomes_project 16 88631743 88663422 + D430001F17Rik processed_transcript processed_transcript MGP_AJ_T0043431.1 MGP_AJ_G0022546.1 mouse_genomes_project 16 13991410 14001534 + MGP_AJ_P0043431 P2rx6 protein_coding protein_coding MGP_AJ_T0043432.1 MGP_AJ_G0022546.1 mouse_genomes_project 16 13991410 14000623 + MGP_AJ_P0043432 P2rx6 protein_coding protein_coding MGP_AJ_T0043433.1 MGP_AJ_G0022546.1 mouse_genomes_project 16 13991458 14007323 + MGP_AJ_P0043433 P2rx6 protein_coding nonsense_mediated_decay MGP_AJ_T0044338.1 MGP_AJ_G0022767.1 mouse_genomes_project 16 34255011 34310496 + MGP_AJ_P0044338 Hgd protein_coding unknown_likely_coding MGP_AJ_T0044339.1 MGP_AJ_G0022767.1 mouse_genomes_project 16 34255437 34307550 + Hgd protein_coding processed_transcript MGP_AJ_T0044340.1 MGP_AJ_G0022767.1 mouse_genomes_project 16 34255441 34287129 + Hgd protein_coding retained_intron MGP_AJ_T0044341.1 MGP_AJ_G0022767.1 mouse_genomes_project 16 34255469 34291215 + Hgd protein_coding processed_transcript MGP_AJ_T0044342.1 MGP_AJ_G0022767.1 mouse_genomes_project 16 34297371 34307550 + Hgd protein_coding processed_transcript MGP_AJ_T0044619.1 MGP_AJ_G0022838.1 mouse_genomes_project 16 45825311 45968033 + MGP_AJ_P0044619 Myh15 protein_coding protein_coding MGP_AJ_T0043261.1 MGP_AJ_G0022512.1 mouse_genomes_project 16 12021018 12034507 - MGP_AJ_P0043261 Mcm4 protein_coding protein_coding MGP_AJ_T0044243.1 MGP_AJ_G0022741.1 mouse_genomes_project 16 32734008 32735792 + MGP_AJ_P0044243 Wdr5b protein_coding protein_coding MGP_AJ_T0043869.1 MGP_AJ_G0022644.1 mouse_genomes_project 16 19797425 19935653 + MGP_AJ_P0043869 St6gal1 protein_coding protein_coding MGP_AJ_T0043870.1 MGP_AJ_G0022644.1 mouse_genomes_project 16 19798706 19895609 + St6gal1 protein_coding processed_transcript MGP_AJ_T0043871.1 MGP_AJ_G0022644.1 mouse_genomes_project 16 19798706 19935655 + MGP_AJ_P0043871 St6gal1 protein_coding protein_coding MGP_AJ_T0043872.1 MGP_AJ_G0022644.1 mouse_genomes_project 16 19843074 19895717 + MGP_AJ_P0043872 St6gal1 protein_coding protein_coding MGP_AJ_T0043873.1 MGP_AJ_G0022644.1 mouse_genomes_project 16 19864511 19933900 + MGP_AJ_P0043873 St6gal1 protein_coding protein_coding MGP_AJ_T0043874.1 MGP_AJ_G0022644.1 mouse_genomes_project 16 19933620 19935653 + St6gal1 protein_coding processed_transcript MGP_AJ_T0099623.1 MGP_AJ_G0037589.1 mouse_genomes_project 16 47686969 47687076 - Gm24925 snRNA snRNA MGP_AJ_T0013185.1 MGP_AJ_G0011280.1 mouse_genomes_project 16 53662205 53663148 - processed_pseudogene processed_pseudogene MGP_AJ_T0045097.1 MGP_AJ_G0023013.1 mouse_genomes_project 16 88314174 88340278 - MGP_AJ_P0045097 Gart protein_coding protein_coding MGP_AJ_T0045098.1 MGP_AJ_G0023013.1 mouse_genomes_project 16 88314381 88336721 - MGP_AJ_P0045098 Gart protein_coding nonsense_mediated_decay MGP_AJ_T0045099.1 MGP_AJ_G0023013.1 mouse_genomes_project 16 88327099 88340261 - MGP_AJ_P0045099 Gart protein_coding protein_coding MGP_AJ_T0000950.1 MGP_AJ_G0000883.1 mouse_genomes_project 16 14359040 14360206 + TEC TEC MGP_AJ_T0044918.1 MGP_AJ_G0022940.1 mouse_genomes_project 16 82119506 82239066 - MGP_AJ_P0044918 Cyyr1 protein_coding protein_coding MGP_AJ_T0044919.1 MGP_AJ_G0022940.1 mouse_genomes_project 16 82148295 82239066 - MGP_AJ_P0044919 Cyyr1 protein_coding protein_coding MGP_AJ_T0000045.1 MGP_AJ_G0000036.1 mouse_genomes_project 16 15534111 15534149 - MGP_AJ_P0000045 Iglj3 IG_J_gene IG_J_gene MGP_AJ_T0044019.1 MGP_AJ_G0022688.1 mouse_genomes_project 16 28562593 28575825 + MGP_AJ_P0044019 Pigz protein_coding protein_coding MGP_AJ_T0044020.1 MGP_AJ_G0022688.1 mouse_genomes_project 16 28562685 28574127 + Pigz protein_coding processed_transcript MGP_AJ_T0044021.1 MGP_AJ_G0022688.1 mouse_genomes_project 16 28562724 28572402 + Pigz protein_coding processed_transcript MGP_AJ_T0044022.1 MGP_AJ_G0022688.1 mouse_genomes_project 16 28571536 28572398 + Pigz protein_coding processed_transcript MGP_AJ_T0043625.1 MGP_AJ_G0022586.1 mouse_genomes_project 16 15861690 15862730 - MGP_AJ_P0043625 Olfr165 protein_coding protein_coding MGP_AJ_T0043627.1 MGP_AJ_G0022586.1 mouse_genomes_project 16 15862286 15872623 - MGP_AJ_P0043627 Olfr165 protein_coding protein_coding MGP_AJ_T0045324.1 MGP_AJ_G0023049.1 mouse_genomes_project 16 92883890 92893260 + Wrb protein_coding retained_intron MGP_AJ_T0045325.1 MGP_AJ_G0023049.1 mouse_genomes_project 16 92883890 92885248 + Wrb protein_coding processed_transcript MGP_AJ_T0045326.1 MGP_AJ_G0023049.1 mouse_genomes_project 16 92883890 92896331 + MGP_AJ_P0045326 Wrb protein_coding protein_coding MGP_AJ_T0045327.1 MGP_AJ_G0023049.1 mouse_genomes_project 16 92883894 92890325 + MGP_AJ_P0045327 Wrb protein_coding protein_coding MGP_AJ_T0043182.1 MGP_AJ_G0022492.1 mouse_genomes_project 16 9639770 9810786 + MGP_AJ_P0043182 Mkl2 protein_coding protein_coding MGP_AJ_T0043183.1 MGP_AJ_G0022492.1 mouse_genomes_project 16 9639795 9728648 + MGP_AJ_P0043183 Mkl2 protein_coding protein_coding MGP_AJ_T0043184.1 MGP_AJ_G0022492.1 mouse_genomes_project 16 9651919 9728645 + MGP_AJ_P0043184 Mkl2 protein_coding protein_coding MGP_AJ_T0043185.1 MGP_AJ_G0022492.1 mouse_genomes_project 16 9754144 9814153 + MGP_AJ_P0043185 Mkl2 protein_coding protein_coding MGP_AJ_T0044709.1 MGP_AJ_G0022863.1 mouse_genomes_project 16 53905827 53961031 - MGP_AJ_P0044709 Tbc1d23 protein_coding unknown_likely_coding MGP_AJ_T0044710.1 MGP_AJ_G0022863.1 mouse_genomes_project 16 53905832 53961131 - MGP_AJ_P0044710 Tbc1d23 protein_coding protein_coding MGP_AJ_T0043114.1 MGP_AJ_G0022477.1 mouse_genomes_project 16 7206122 7206683 - MGP_AJ_P0043114 Prm1 protein_coding protein_coding MGP_AJ_T0044768.1 MGP_AJ_G0022883.1 mouse_genomes_project 16 55773154 55777287 - MGP_AJ_P0044768 Olfr187 protein_coding protein_coding MGP_AJ_T0044769.1 MGP_AJ_G0022883.1 mouse_genomes_project 16 55773154 55774132 - MGP_AJ_P0044769 Olfr187 protein_coding protein_coding MGP_AJ_T0044770.1 MGP_AJ_G0022883.1 mouse_genomes_project 16 55773679 55777305 - MGP_AJ_P0044770 Olfr187 protein_coding protein_coding MGP_AJ_T0043802.1 MGP_AJ_G0022628.1 mouse_genomes_project 16 18582595 18689086 - Igf2bp2 protein_coding retained_intron MGP_AJ_T0043803.1 MGP_AJ_G0022628.1 mouse_genomes_project 16 18582608 18612650 - Igf2bp2 protein_coding retained_intron MGP_AJ_T0043804.1 MGP_AJ_G0022628.1 mouse_genomes_project 16 18584327 18689030 - MGP_AJ_P0043804 Igf2bp2 protein_coding protein_coding MGP_AJ_T0043805.1 MGP_AJ_G0022628.1 mouse_genomes_project 16 18584900 18587232 - Igf2bp2 protein_coding retained_intron MGP_AJ_T0043806.1 MGP_AJ_G0022628.1 mouse_genomes_project 16 18599553 18602654 - Igf2bp2 protein_coding retained_intron MGP_AJ_T0043807.1 MGP_AJ_G0022628.1 mouse_genomes_project 16 18607477 18662023 - Igf2bp2 protein_coding processed_transcript MGP_AJ_T0043808.1 MGP_AJ_G0022628.1 mouse_genomes_project 16 18676269 18689059 - Igf2bp2 protein_coding processed_transcript MGP_AJ_T0043809.1 MGP_AJ_G0022628.1 mouse_genomes_project 16 18686947 18689042 - Igf2bp2 protein_coding retained_intron MGP_AJ_T0045344.1 MGP_AJ_G0023053.1 mouse_genomes_project 16 93100289 93173779 + MGP_AJ_P0045344 Igsf5 protein_coding protein_coding MGP_AJ_T0045345.1 MGP_AJ_G0023053.1 mouse_genomes_project 16 93100415 93143239 + MGP_AJ_P0045345 Igsf5 protein_coding protein_coding MGP_AJ_T0045346.1 MGP_AJ_G0023053.1 mouse_genomes_project 16 93100415 93143242 + MGP_AJ_P0045346 Igsf5 protein_coding protein_coding MGP_AJ_T0045347.1 MGP_AJ_G0023053.1 mouse_genomes_project 16 93100415 93280129 + MGP_AJ_P0045347 Igsf5 protein_coding protein_coding MGP_AJ_T0045348.1 MGP_AJ_G0023053.1 mouse_genomes_project 16 93125324 93142539 + Igsf5 protein_coding processed_transcript MGP_AJ_T0045349.1 MGP_AJ_G0023053.1 mouse_genomes_project 16 93135615 93173612 + MGP_AJ_P0045349 Igsf5 protein_coding protein_coding MGP_AJ_T0102363.1 MGP_AJ_G0040105.1 mouse_genomes_project 16 55690313 55690884 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0043642.1 MGP_AJ_G0022596.1 mouse_genomes_project 16 16348514 16358951 - MGP_AJ_P0043642 A930003A15Rik protein_coding protein_coding MGP_AJ_T0044823.1 MGP_AJ_G0022911.1 mouse_genomes_project 16 61685335 61857104 - MGP_AJ_P0044823 Htr1f protein_coding protein_coding MGP_AJ_T0010155.1 MGP_AJ_G0008277.1 mouse_genomes_project 16 74296772 74296837 + Mir99a miRNA miRNA MGP_AJ_T0099605.1 MGP_AJ_G0037571.1 mouse_genomes_project 16 31910236 31910364 - Gm25179 snRNA snRNA MGP_AJ_T0044156.1 MGP_AJ_G0022720.1 mouse_genomes_project 16 30068417 30192172 + MGP_AJ_P0044156 Zfp148 protein_coding protein_coding MGP_AJ_T0044157.1 MGP_AJ_G0022720.1 mouse_genomes_project 16 30087768 30186398 + MGP_AJ_P0044157 Zfp148 protein_coding protein_coding MGP_AJ_T0043259.1 MGP_AJ_G0022510.1 mouse_genomes_project 16 11099196 11102722 + MGP_AJ_P0043259 Snai2 protein_coding protein_coding MGP_AJ_T0011416.1 MGP_AJ_G0009538.1 mouse_genomes_project 16 81307487 81307809 - Gm25292 misc_RNA misc_RNA MGP_AJ_T0043264.1 MGP_AJ_G0022514.1 mouse_genomes_project 16 12248898 12264784 - MGP_AJ_P0043264 Mzt2 protein_coding protein_coding MGP_AJ_T0043265.1 MGP_AJ_G0022514.1 mouse_genomes_project 16 12248900 12264159 - Mzt2 protein_coding retained_intron MGP_AJ_T0043266.1 MGP_AJ_G0022514.1 mouse_genomes_project 16 12248907 12264806 - MGP_AJ_P0043266 Mzt2 protein_coding protein_coding MGP_AJ_T0043833.1 MGP_AJ_G0022636.1 mouse_genomes_project 16 19458102 19477999 + MGP_AJ_P0043833 Fetub protein_coding protein_coding MGP_AJ_T0043834.1 MGP_AJ_G0022636.1 mouse_genomes_project 16 19459942 19477999 + MGP_AJ_P0043834 Fetub protein_coding protein_coding MGP_AJ_T0043835.1 MGP_AJ_G0022636.1 mouse_genomes_project 16 19461445 19477990 + MGP_AJ_P0043835 Fetub protein_coding protein_coding MGP_AJ_T0043836.1 MGP_AJ_G0022636.1 mouse_genomes_project 16 19466399 19477993 + MGP_AJ_P0043836 Fetub protein_coding protein_coding MGP_AJ_T0043921.1 MGP_AJ_G0022664.1 mouse_genomes_project 16 24760804 25044910 - MGP_AJ_P0043921 Fgf12 protein_coding protein_coding MGP_AJ_T0010167.1 MGP_AJ_G0008289.1 mouse_genomes_project 16 94643437 94643496 - Mir6964 miRNA miRNA MGP_AJ_T0013161.1 MGP_AJ_G0011256.1 mouse_genomes_project 16 32609652 32609925 + processed_pseudogene processed_pseudogene MGP_AJ_T0006846.1 MGP_AJ_G0005639.1 mouse_genomes_project 16 26394174 26421415 + Gm26834 lincRNA lincRNA MGP_AJ_T0044252.1 MGP_AJ_G0022747.1 mouse_genomes_project 16 32882647 32886501 + MGP_AJ_P0044252 Gm5483 protein_coding protein_coding MGP_AJ_T0043957.1 MGP_AJ_G0022674.1 mouse_genomes_project 16 26901827 26904922 - MGP_AJ_P0043957 Gp5 protein_coding protein_coding MGP_AJ_T0099633.1 MGP_AJ_G0037599.1 mouse_genomes_project 16 80980659 80980766 + Gm24508 snRNA snRNA MGP_AJ_T0100881.1 MGP_AJ_G0038847.1 mouse_genomes_project 16 38041314 38041390 + Gm25128 snoRNA snoRNA MGP_AJ_T0045171.1 MGP_AJ_G0023021.1 mouse_genomes_project 16 88995980 89001699 + MGP_AJ_P0045171 Kcne2 protein_coding protein_coding MGP_AJ_T0045172.1 MGP_AJ_G0023021.1 mouse_genomes_project 16 88999185 89001699 + MGP_AJ_P0045172 Kcne2 protein_coding protein_coding MGP_AJ_T0044567.1 MGP_AJ_G0022823.1 mouse_genomes_project 16 42529680 42542697 - MGP_AJ_P0044567 Abhd10 protein_coding protein_coding MGP_AJ_T0044568.1 MGP_AJ_G0022823.1 mouse_genomes_project 16 42531503 42542644 - MGP_AJ_P0044568 Abhd10 protein_coding protein_coding MGP_AJ_T0044569.1 MGP_AJ_G0022823.1 mouse_genomes_project 16 42536727 42542627 - Abhd10 protein_coding processed_transcript MGP_AJ_T0044570.1 MGP_AJ_G0022823.1 mouse_genomes_project 16 42540090 42542649 - Abhd10 protein_coding processed_transcript MGP_AJ_T0044571.1 MGP_AJ_G0022823.1 mouse_genomes_project 16 42540597 42542642 - Abhd10 protein_coding processed_transcript MGP_AJ_T0042919.1 MGP_AJ_G0022424.1 mouse_genomes_project 16 616884 647813 - MGP_AJ_P0042919 Adcy9 protein_coding unknown_likely_coding MGP_AJ_T0042920.1 MGP_AJ_G0022424.1 mouse_genomes_project 16 619811 743657 - MGP_AJ_P0042920 Adcy9 protein_coding protein_coding MGP_AJ_T0042921.1 MGP_AJ_G0022424.1 mouse_genomes_project 16 619811 742967 - MGP_AJ_P0042921 Adcy9 protein_coding protein_coding MGP_AJ_T0042922.1 MGP_AJ_G0022424.1 mouse_genomes_project 16 619933 742746 - MGP_AJ_P0042922 Adcy9 protein_coding protein_coding MGP_AJ_T0045000.1 MGP_AJ_G0022987.1 mouse_genomes_project 16 86089143 86089881 - MGP_AJ_P0045000 Krtap6-2 protein_coding protein_coding MGP_AJ_T0044781.1 MGP_AJ_G0022893.1 mouse_genomes_project 16 56078282 56082864 + MGP_AJ_P0044781 Olfr203 protein_coding protein_coding MGP_AJ_T0044896.1 MGP_AJ_G0022936.1 mouse_genomes_project 16 81460378 81515716 + MGP_AJ_P0044896 Jam2 protein_coding protein_coding MGP_AJ_T0044897.1 MGP_AJ_G0022936.1 mouse_genomes_project 16 81460641 81500783 + MGP_AJ_P0044897 Jam2 protein_coding protein_coding MGP_AJ_T0044898.1 MGP_AJ_G0022936.1 mouse_genomes_project 16 81499193 81512674 + Jam2 protein_coding processed_transcript MGP_AJ_T0017499.1 MGP_AJ_G0015295.1 mouse_genomes_project 16 52697178 52712290 + Gm28037 processed_transcript processed_transcript MGP_AJ_T0006854.1 MGP_AJ_G0005647.1 mouse_genomes_project 16 35144112 35145623 + D930030I03Rik lincRNA lincRNA MGP_AJ_T0044743.1 MGP_AJ_G0022873.1 mouse_genomes_project 16 55431331 55432621 - MGP_AJ_P0044743 Gpr15 protein_coding protein_coding MGP_AJ_T0102364.1 MGP_AJ_G0040106.1 mouse_genomes_project 16 55742712 55743774 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0017521.1 MGP_AJ_G0015301.1 mouse_genomes_project 16 87701315 87706570 + 4930404I05Rik processed_transcript processed_transcript MGP_AJ_T0017522.1 MGP_AJ_G0015301.1 mouse_genomes_project 16 87703787 87706810 + 4930404I05Rik processed_transcript processed_transcript MGP_AJ_T0100893.1 MGP_AJ_G0038859.1 mouse_genomes_project 16 57856241 57856318 + Gm23852 snoRNA snoRNA MGP_AJ_T0042863.1 MGP_AJ_G0022415.1 mouse_genomes_project 16 206463 241063 + MGP_AJ_P0042863 Gm20695 protein_coding protein_coding MGP_AJ_T0042873.1 MGP_AJ_G0022415.1 mouse_genomes_project 16 219778 241032 + Gm20695 protein_coding processed_transcript MGP_AJ_T0099616.1 MGP_AJ_G0037582.1 mouse_genomes_project 16 34660912 34661052 + Gm25140 snRNA snRNA MGP_AJ_T0045030.1 MGP_AJ_G0022997.1 mouse_genomes_project 16 87439580 87497732 - MGP_AJ_P0045030 Urb1 protein_coding protein_coding MGP_AJ_T0045031.1 MGP_AJ_G0022997.1 mouse_genomes_project 16 87455073 87460775 - Urb1 protein_coding retained_intron MGP_AJ_T0045032.1 MGP_AJ_G0022997.1 mouse_genomes_project 16 87471126 87497732 - Urb1 protein_coding retained_intron MGP_AJ_T0045033.1 MGP_AJ_G0022997.1 mouse_genomes_project 16 87487510 87497721 - Urb1 protein_coding retained_intron MGP_AJ_T0045034.1 MGP_AJ_G0022997.1 mouse_genomes_project 16 87492298 87497753 - Urb1 protein_coding retained_intron MGP_AJ_T0006844.1 MGP_AJ_G0005637.1 mouse_genomes_project 16 20984287 20986264 - Lppos lincRNA lincRNA MGP_AJ_T0045134.1 MGP_AJ_G0023018.1 mouse_genomes_project 16 88424331 88568438 + MGP_AJ_P0045134 Itsn1 protein_coding protein_coding MGP_AJ_T0045135.1 MGP_AJ_G0023018.1 mouse_genomes_project 16 88424403 88569879 + MGP_AJ_P0045135 Itsn1 protein_coding protein_coding MGP_AJ_T0045136.1 MGP_AJ_G0023018.1 mouse_genomes_project 16 88424403 88612124 + MGP_AJ_P0045136 Itsn1 protein_coding protein_coding MGP_AJ_T0045137.1 MGP_AJ_G0023018.1 mouse_genomes_project 16 88424403 88618733 + MGP_AJ_P0045137 Itsn1 protein_coding protein_coding MGP_AJ_T0045138.1 MGP_AJ_G0023018.1 mouse_genomes_project 16 88424420 88527951 + MGP_AJ_P0045138 Itsn1 protein_coding protein_coding MGP_AJ_T0045139.1 MGP_AJ_G0023018.1 mouse_genomes_project 16 88424421 88569883 + MGP_AJ_P0045139 Itsn1 protein_coding protein_coding MGP_AJ_T0045140.1 MGP_AJ_G0023018.1 mouse_genomes_project 16 88424423 88569881 + MGP_AJ_P0045140 Itsn1 protein_coding protein_coding MGP_AJ_T0045141.1 MGP_AJ_G0023018.1 mouse_genomes_project 16 88424516 88478202 + Itsn1 protein_coding retained_intron MGP_AJ_T0045142.1 MGP_AJ_G0023018.1 mouse_genomes_project 16 88424621 88489672 + Itsn1 protein_coding retained_intron MGP_AJ_T0045143.1 MGP_AJ_G0023018.1 mouse_genomes_project 16 88424642 88568725 + MGP_AJ_P0045143 Itsn1 protein_coding protein_coding MGP_AJ_T0045144.1 MGP_AJ_G0023018.1 mouse_genomes_project 16 88477984 88514247 + MGP_AJ_P0045144 Itsn1 protein_coding protein_coding MGP_AJ_T0045145.1 MGP_AJ_G0023018.1 mouse_genomes_project 16 88479928 88523924 + Itsn1 protein_coding processed_transcript MGP_AJ_T0045146.1 MGP_AJ_G0023018.1 mouse_genomes_project 16 88500419 88512535 + Itsn1 protein_coding processed_transcript MGP_AJ_T0045147.1 MGP_AJ_G0023018.1 mouse_genomes_project 16 88500433 88507909 + Itsn1 protein_coding retained_intron MGP_AJ_T0045148.1 MGP_AJ_G0023018.1 mouse_genomes_project 16 88512443 88523511 + Itsn1 protein_coding processed_transcript MGP_AJ_T0045149.1 MGP_AJ_G0023018.1 mouse_genomes_project 16 88523150 88523887 + Itsn1 protein_coding retained_intron MGP_AJ_T0045150.1 MGP_AJ_G0023018.1 mouse_genomes_project 16 88536049 88549527 + Itsn1 protein_coding retained_intron MGP_AJ_T0045151.1 MGP_AJ_G0023018.1 mouse_genomes_project 16 88536138 88551471 + MGP_AJ_P0045151 Itsn1 protein_coding nonsense_mediated_decay MGP_AJ_T0045152.1 MGP_AJ_G0023018.1 mouse_genomes_project 16 88538978 88551471 + MGP_AJ_P0045152 Itsn1 protein_coding protein_coding MGP_AJ_T0045153.1 MGP_AJ_G0023018.1 mouse_genomes_project 16 88552021 88561528 + MGP_AJ_P0045153 Itsn1 protein_coding nonsense_mediated_decay MGP_AJ_T0045154.1 MGP_AJ_G0023018.1 mouse_genomes_project 16 88560236 88569575 + Itsn1 protein_coding retained_intron MGP_AJ_T0045155.1 MGP_AJ_G0023018.1 mouse_genomes_project 16 88575755 88592093 + Itsn1 protein_coding processed_transcript MGP_AJ_T0045156.1 MGP_AJ_G0023018.1 mouse_genomes_project 16 88585652 88607408 + MGP_AJ_P0045156 Itsn1 protein_coding protein_coding MGP_AJ_T0045157.1 MGP_AJ_G0023018.1 mouse_genomes_project 16 88597642 88607431 + MGP_AJ_P0045157 Itsn1 protein_coding nonsense_mediated_decay MGP_AJ_T0045158.1 MGP_AJ_G0023018.1 mouse_genomes_project 16 88597644 88607408 + MGP_AJ_P0045158 Itsn1 protein_coding protein_coding MGP_AJ_T0045159.1 MGP_AJ_G0023018.1 mouse_genomes_project 16 88610094 88613296 + Itsn1 protein_coding processed_transcript MGP_AJ_T0044916.1 MGP_AJ_G0022939.1 mouse_genomes_project 16 81635762 81870800 - MGP_AJ_P0044916 App protein_coding unknown_likely_coding MGP_AJ_T0044917.1 MGP_AJ_G0022939.1 mouse_genomes_project 16 81637537 81870958 - MGP_AJ_P0044917 App protein_coding protein_coding MGP_AJ_T0044832.1 MGP_AJ_G0022915.1 mouse_genomes_project 16 63372619 64351974 - MGP_AJ_P0044832 Cadm2 protein_coding protein_coding MGP_AJ_T0044833.1 MGP_AJ_G0022915.1 mouse_genomes_project 16 63378945 64351889 - MGP_AJ_P0044833 Cadm2 protein_coding protein_coding MGP_AJ_T0044834.1 MGP_AJ_G0022915.1 mouse_genomes_project 16 63379390 64351974 - MGP_AJ_P0044834 Cadm2 protein_coding protein_coding MGP_AJ_T0044835.1 MGP_AJ_G0022915.1 mouse_genomes_project 16 63380293 63674527 - MGP_AJ_P0044835 Cadm2 protein_coding protein_coding MGP_AJ_T0044836.1 MGP_AJ_G0022915.1 mouse_genomes_project 16 63496339 64351559 - MGP_AJ_P0044836 Cadm2 protein_coding protein_coding MGP_AJ_T0044837.1 MGP_AJ_G0022915.1 mouse_genomes_project 16 63523200 63645843 - Cadm2 protein_coding processed_transcript MGP_AJ_T0013132.1 MGP_AJ_G0011227.1 mouse_genomes_project 16 11815668 11816722 + processed_pseudogene processed_pseudogene MGP_AJ_T0045003.1 MGP_AJ_G0022990.1 mouse_genomes_project 16 86244119 86245127 - MGP_AJ_P0045003 Krtap11-1 protein_coding protein_coding MGP_AJ_T0044343.1 MGP_AJ_G0022768.1 mouse_genomes_project 16 34321940 34329225 - MGP_AJ_P0044343 Ndufb4 protein_coding protein_coding MGP_AJ_T0044344.1 MGP_AJ_G0022768.1 mouse_genomes_project 16 34322371 34324130 - Ndufb4 protein_coding retained_intron MGP_AJ_T0013127.1 MGP_AJ_G0011222.1 mouse_genomes_project 16 9164005 9165340 - processed_pseudogene processed_pseudogene MGP_AJ_T0042871.1 MGP_AJ_G0022416.1 mouse_genomes_project 16 216726 230201 - 1700037C18Rik protein_coding processed_transcript MGP_AJ_T0042872.1 MGP_AJ_G0022416.1 mouse_genomes_project 16 216728 229305 - MGP_AJ_P0042872 1700037C18Rik protein_coding nonsense_mediated_decay MGP_AJ_T0042874.1 MGP_AJ_G0022416.1 mouse_genomes_project 16 225845 230237 - MGP_AJ_P0042874 1700037C18Rik protein_coding protein_coding MGP_AJ_T0042875.1 MGP_AJ_G0022416.1 mouse_genomes_project 16 227343 229250 - MGP_AJ_P0042875 1700037C18Rik protein_coding protein_coding MGP_AJ_T0042876.1 MGP_AJ_G0022416.1 mouse_genomes_project 16 227803 229199 - MGP_AJ_P0042876 1700037C18Rik protein_coding protein_coding MGP_AJ_T0042877.1 MGP_AJ_G0022416.1 mouse_genomes_project 16 228558 230171 - MGP_AJ_P0042877 1700037C18Rik protein_coding protein_coding MGP_AJ_T0044638.1 MGP_AJ_G0022844.1 mouse_genomes_project 16 48745917 48927405 + MGP_AJ_P0044638 Cblb protein_coding protein_coding MGP_AJ_T0044639.1 MGP_AJ_G0022844.1 mouse_genomes_project 16 48746031 48927412 + MGP_AJ_P0044639 Cblb protein_coding unknown_likely_coding MGP_AJ_T0098931.1 MGP_AJ_G0036910.1 mouse_genomes_project 16 88795959 88797878 + Gm16310 sense_intronic sense_intronic MGP_AJ_T0044930.1 MGP_AJ_G0022946.1 mouse_genomes_project 16 84107336 84136247 + MGP_AJ_P0044930 Usp16 protein_coding protein_coding MGP_AJ_T0044931.1 MGP_AJ_G0022946.1 mouse_genomes_project 16 84107612 84136040 + MGP_AJ_P0044931 Usp16 protein_coding protein_coding MGP_AJ_T0044932.1 MGP_AJ_G0022946.1 mouse_genomes_project 16 84107618 84114660 + MGP_AJ_P0044932 Usp16 protein_coding protein_coding MGP_AJ_T0044933.1 MGP_AJ_G0022946.1 mouse_genomes_project 16 84107660 84114178 + Usp16 protein_coding retained_intron MGP_AJ_T0044934.1 MGP_AJ_G0022946.1 mouse_genomes_project 16 84107676 84123734 + Usp16 protein_coding retained_intron MGP_AJ_T0044935.1 MGP_AJ_G0022946.1 mouse_genomes_project 16 84107682 84118941 + Usp16 protein_coding processed_transcript MGP_AJ_T0044936.1 MGP_AJ_G0022946.1 mouse_genomes_project 16 84107691 84136040 + MGP_AJ_P0044936 Usp16 protein_coding nonsense_mediated_decay MGP_AJ_T0044937.1 MGP_AJ_G0022946.1 mouse_genomes_project 16 84125563 84132641 + Usp16 protein_coding retained_intron MGP_AJ_T0044938.1 MGP_AJ_G0022946.1 mouse_genomes_project 16 84125798 84131935 + Usp16 protein_coding retained_intron MGP_AJ_T0044939.1 MGP_AJ_G0022946.1 mouse_genomes_project 16 84134165 84135910 + Usp16 protein_coding retained_intron MGP_AJ_T0044940.1 MGP_AJ_G0022946.1 mouse_genomes_project 16 84135580 84136028 + Usp16 protein_coding retained_intron MGP_AJ_T0010143.1 MGP_AJ_G0008265.1 mouse_genomes_project 16 41370947 41371031 - Mir3081 miRNA miRNA MGP_AJ_T0045197.1 MGP_AJ_G0023029.1 mouse_genomes_project 16 90343761 90353298 + MGP_AJ_P0045197 Cbr1 protein_coding protein_coding MGP_AJ_T0098414.1 MGP_AJ_G0036398.1 mouse_genomes_project 16 85420861 85421491 + pseudogene pseudogene MGP_AJ_T0013194.1 MGP_AJ_G0011289.1 mouse_genomes_project 16 72453567 72454470 - processed_pseudogene processed_pseudogene MGP_AJ_T0043268.1 MGP_AJ_G0022516.1 mouse_genomes_project 16 12616705 12632854 + MGP_AJ_P0043268 Pkp2 protein_coding protein_coding MGP_AJ_T0043269.1 MGP_AJ_G0022516.1 mouse_genomes_project 16 12616705 12653918 + MGP_AJ_P0043269 Pkp2 protein_coding protein_coding MGP_AJ_T0043270.1 MGP_AJ_G0022516.1 mouse_genomes_project 16 12616705 12678464 + MGP_AJ_P0043270 Pkp2 protein_coding protein_coding MGP_AJ_T0043503.1 MGP_AJ_G0022561.1 mouse_genomes_project 16 14493213 14511608 + MGP_AJ_P0043503 Dgcr6 protein_coding protein_coding MGP_AJ_T0043504.1 MGP_AJ_G0022561.1 mouse_genomes_project 16 14493229 14496913 + Dgcr6 protein_coding processed_transcript MGP_AJ_T0043505.1 MGP_AJ_G0022561.1 mouse_genomes_project 16 14493245 14506914 + Dgcr6 protein_coding processed_transcript MGP_AJ_T0043507.1 MGP_AJ_G0022561.1 mouse_genomes_project 16 14505564 14511590 + MGP_AJ_P0043507 Dgcr6 protein_coding protein_coding MGP_AJ_T0043508.1 MGP_AJ_G0022561.1 mouse_genomes_project 16 14506804 14511885 + MGP_AJ_P0043508 Dgcr6 protein_coding protein_coding MGP_AJ_T0043509.1 MGP_AJ_G0022561.1 mouse_genomes_project 16 14506848 14511606 + MGP_AJ_P0043509 Dgcr6 protein_coding protein_coding MGP_AJ_T0043510.1 MGP_AJ_G0022561.1 mouse_genomes_project 16 14506853 14511880 + MGP_AJ_P0043510 Dgcr6 protein_coding protein_coding MGP_AJ_T0043511.1 MGP_AJ_G0022561.1 mouse_genomes_project 16 14509727 14511591 + Dgcr6 protein_coding processed_transcript MGP_AJ_T0000964.1 MGP_AJ_G0000896.1 mouse_genomes_project 16 74110829 74114292 + TEC TEC MGP_AJ_T0044741.1 MGP_AJ_G0022871.1 mouse_genomes_project 16 55350976 55354549 - MGP_AJ_P0044741 E330017A01Rik protein_coding protein_coding MGP_AJ_T0044952.1 MGP_AJ_G0022949.1 mouse_genomes_project 16 84355166 84390753 + MGP_AJ_P0044952 Bach1 protein_coding protein_coding MGP_AJ_T0044953.1 MGP_AJ_G0022949.1 mouse_genomes_project 16 84355186 84390185 + Bach1 protein_coding processed_transcript MGP_AJ_T0044954.1 MGP_AJ_G0022949.1 mouse_genomes_project 16 84355225 84379065 + Bach1 protein_coding retained_intron MGP_AJ_T0043280.1 MGP_AJ_G0022519.1 mouse_genomes_project 16 12824820 12968065 - MGP_AJ_P0043280 Fgd4 protein_coding protein_coding MGP_AJ_T0043281.1 MGP_AJ_G0022519.1 mouse_genomes_project 16 12830466 13008601 - MGP_AJ_P0043281 Fgd4 protein_coding protein_coding MGP_AJ_T0043282.1 MGP_AJ_G0022519.1 mouse_genomes_project 16 12830505 12934679 - MGP_AJ_P0043282 Fgd4 protein_coding protein_coding MGP_AJ_T0043283.1 MGP_AJ_G0022519.1 mouse_genomes_project 16 12841450 12967892 - Fgd4 protein_coding retained_intron MGP_AJ_T0043284.1 MGP_AJ_G0022519.1 mouse_genomes_project 16 12841450 12913991 - MGP_AJ_P0043284 Fgd4 protein_coding protein_coding MGP_AJ_T0043285.1 MGP_AJ_G0022519.1 mouse_genomes_project 16 12860905 12968057 - Fgd4 protein_coding retained_intron MGP_AJ_T0043286.1 MGP_AJ_G0022519.1 mouse_genomes_project 16 12863398 12968057 - Fgd4 protein_coding retained_intron MGP_AJ_T0043287.1 MGP_AJ_G0022519.1 mouse_genomes_project 16 12873224 13009172 - MGP_AJ_P0043287 Fgd4 protein_coding protein_coding MGP_AJ_T0043288.1 MGP_AJ_G0022519.1 mouse_genomes_project 16 12881064 12967836 - Fgd4 protein_coding retained_intron MGP_AJ_T0043289.1 MGP_AJ_G0022519.1 mouse_genomes_project 16 12892524 13008662 - Fgd4 protein_coding retained_intron MGP_AJ_T0043290.1 MGP_AJ_G0022519.1 mouse_genomes_project 16 12893503 12934679 - Fgd4 protein_coding retained_intron MGP_AJ_T0003661.1 MGP_AJ_G0003311.1 mouse_genomes_project 16 28051577 28053477 - Gm15743 antisense antisense MGP_AJ_T0003662.1 MGP_AJ_G0003311.1 mouse_genomes_project 16 28051577 28051993 - Gm15743 antisense antisense MGP_AJ_T0043631.1 MGP_AJ_G0022591.1 mouse_genomes_project 16 16104343 16108346 - MGP_AJ_P0043631 protein_coding protein_coding MGP_AJ_T0043916.1 MGP_AJ_G0022663.1 mouse_genomes_project 16 23976809 24032602 + MGP_AJ_P0043916 Ccdc50 protein_coding protein_coding MGP_AJ_T0043917.1 MGP_AJ_G0022663.1 mouse_genomes_project 16 23976920 24026765 + MGP_AJ_P0043917 Ccdc50 protein_coding protein_coding MGP_AJ_T0043918.1 MGP_AJ_G0022663.1 mouse_genomes_project 16 23976920 24020053 + MGP_AJ_P0043918 Ccdc50 protein_coding protein_coding MGP_AJ_T0043919.1 MGP_AJ_G0022663.1 mouse_genomes_project 16 23977876 24018733 + MGP_AJ_P0043919 Ccdc50 protein_coding protein_coding MGP_AJ_T0043920.1 MGP_AJ_G0022663.1 mouse_genomes_project 16 23977908 23979032 + Ccdc50 protein_coding processed_transcript MGP_AJ_T0042964.1 MGP_AJ_G0022434.1 mouse_genomes_project 16 1069853 1092224 - MGP_AJ_P0042964 Cdip1 protein_coding protein_coding MGP_AJ_T0042967.1 MGP_AJ_G0022434.1 mouse_genomes_project 16 1087587 1112404 - MGP_AJ_P0042967 Cdip1 protein_coding protein_coding MGP_AJ_T0042968.1 MGP_AJ_G0022434.1 mouse_genomes_project 16 1088967 1093743 - Cdip1 protein_coding retained_intron MGP_AJ_T0042969.1 MGP_AJ_G0022434.1 mouse_genomes_project 16 1088967 1112706 - MGP_AJ_P0042969 Cdip1 protein_coding protein_coding MGP_AJ_T0042970.1 MGP_AJ_G0022434.1 mouse_genomes_project 16 1089465 1112344 - MGP_AJ_P0042970 Cdip1 protein_coding protein_coding MGP_AJ_T0042971.1 MGP_AJ_G0022434.1 mouse_genomes_project 16 1091435 1112680 - Cdip1 protein_coding retained_intron MGP_AJ_T0042972.1 MGP_AJ_G0022435.1 mouse_genomes_project 16 1164385 1181115 + MGP_AJ_P0042972 4930562C15Rik protein_coding non_stop_decay MGP_AJ_T0042973.1 MGP_AJ_G0022435.1 mouse_genomes_project 16 1164385 1195307 + MGP_AJ_P0042973 4930562C15Rik protein_coding protein_coding MGP_AJ_T0042974.1 MGP_AJ_G0022435.1 mouse_genomes_project 16 1170098 1181121 + MGP_AJ_P0042974 4930562C15Rik protein_coding non_stop_decay MGP_AJ_T0042975.1 MGP_AJ_G0022435.1 mouse_genomes_project 16 1179726 1187766 + MGP_AJ_P0042975 4930562C15Rik protein_coding protein_coding MGP_AJ_T0042976.1 MGP_AJ_G0022435.1 mouse_genomes_project 16 1188276 1194965 + MGP_AJ_P0042976 4930562C15Rik protein_coding nonsense_mediated_decay MGP_AJ_T0042977.1 MGP_AJ_G0022435.1 mouse_genomes_project 16 1191874 1192730 + 4930562C15Rik protein_coding retained_intron MGP_AJ_T0010121.1 MGP_AJ_G0008243.1 mouse_genomes_project 16 14773369 14773434 - Mir185 miRNA miRNA MGP_AJ_T0044880.1 MGP_AJ_G0022928.1 mouse_genomes_project 16 75009486 75048726 + MGP_AJ_P0044880 Cxadr protein_coding protein_coding MGP_AJ_T0044881.1 MGP_AJ_G0022928.1 mouse_genomes_project 16 75009746 75060638 + MGP_AJ_P0044881 Cxadr protein_coding protein_coding MGP_AJ_T0010153.1 MGP_AJ_G0008275.1 mouse_genomes_project 16 71049941 71050019 - Mir691 miRNA miRNA MGP_AJ_T0006868.1 MGP_AJ_G0005656.1 mouse_genomes_project 16 53639575 53642631 + lincRNA lincRNA MGP_AJ_T0013134.1 MGP_AJ_G0011229.1 mouse_genomes_project 16 12772300 12773274 - processed_pseudogene processed_pseudogene MGP_AJ_T0003666.1 MGP_AJ_G0003315.1 mouse_genomes_project 16 30457751 30474360 - Gm15658 antisense antisense MGP_AJ_T0044962.1 MGP_AJ_G0022953.1 mouse_genomes_project 16 85270687 85272258 - MGP_AJ_P0044962 Krtap24-1 protein_coding protein_coding MGP_AJ_T0043868.1 MGP_AJ_G0022643.1 mouse_genomes_project 16 19793341 19798054 - MGP_AJ_P0043868 BC106179 protein_coding protein_coding MGP_AJ_T0010154.1 MGP_AJ_G0008276.1 mouse_genomes_project 16 72445586 72445690 + Gm22923 miRNA miRNA MGP_AJ_T0044420.1 MGP_AJ_G0022791.1 mouse_genomes_project 16 39018106 39112298 - MGP_AJ_P0044420 Gap43 protein_coding protein_coding MGP_AJ_T0044421.1 MGP_AJ_G0022791.1 mouse_genomes_project 16 39018122 39048916 - Gap43 protein_coding processed_transcript MGP_AJ_T0043662.1 MGP_AJ_G0022602.1 mouse_genomes_project 16 16782596 16796945 - protein_coding processed_transcript MGP_AJ_T0043663.1 MGP_AJ_G0022602.1 mouse_genomes_project 16 16782596 16797002 - MGP_AJ_P0043663 protein_coding protein_coding MGP_AJ_T0043664.1 MGP_AJ_G0022602.1 mouse_genomes_project 16 16783879 16788420 - protein_coding processed_transcript MGP_AJ_T0043665.1 MGP_AJ_G0022602.1 mouse_genomes_project 16 16783985 16790958 - MGP_AJ_P0043665 protein_coding protein_coding MGP_AJ_T0043666.1 MGP_AJ_G0022602.1 mouse_genomes_project 16 16789227 16790259 - protein_coding processed_transcript MGP_AJ_T0044369.1 MGP_AJ_G0022778.1 mouse_genomes_project 16 35058939 35073238 + MGP_AJ_P0044369 Popdc2 protein_coding protein_coding MGP_AJ_T0044370.1 MGP_AJ_G0022778.1 mouse_genomes_project 16 35058975 35073238 + MGP_AJ_P0044370 Popdc2 protein_coding protein_coding MGP_AJ_T0044371.1 MGP_AJ_G0022778.1 mouse_genomes_project 16 35063830 35069219 + Popdc2 protein_coding processed_transcript MGP_AJ_T0044372.1 MGP_AJ_G0022778.1 mouse_genomes_project 16 35064450 35072785 + Popdc2 protein_coding processed_transcript MGP_AJ_T0044373.1 MGP_AJ_G0022778.1 mouse_genomes_project 16 35067022 35069162 + Popdc2 protein_coding processed_transcript MGP_AJ_T0043025.1 MGP_AJ_G0022452.1 mouse_genomes_project 16 3182138 3799008 + MGP_AJ_P0043025 Rbfox1 protein_coding protein_coding MGP_AJ_T0043026.1 MGP_AJ_G0022452.1 mouse_genomes_project 16 3447290 3801677 + MGP_AJ_P0043026 Rbfox1 protein_coding protein_coding MGP_AJ_T0043027.1 MGP_AJ_G0022452.1 mouse_genomes_project 16 3593904 3797750 + MGP_AJ_P0043027 Rbfox1 protein_coding unknown_likely_coding MGP_AJ_T0006828.1 MGP_AJ_G0005624.1 mouse_genomes_project 16 7323452 7326238 - Gm21859 lincRNA lincRNA MGP_AJ_T0099621.1 MGP_AJ_G0037587.1 mouse_genomes_project 16 44300369 44300476 - Gm24651 snRNA snRNA MGP_AJ_T0043112.1 MGP_AJ_G0022476.1 mouse_genomes_project 16 7201176 7201902 - MGP_AJ_P0043112 Prm2 protein_coding protein_coding MGP_AJ_T0043113.1 MGP_AJ_G0022476.1 mouse_genomes_project 16 7201333 7205931 - MGP_AJ_P0043113 Prm2 protein_coding protein_coding MGP_AJ_T0043821.1 MGP_AJ_G0022631.1 mouse_genomes_project 16 19005638 19195711 - MGP_AJ_P0043821 Dgkg protein_coding protein_coding MGP_AJ_T0043822.1 MGP_AJ_G0022631.1 mouse_genomes_project 16 19006399 19195759 - MGP_AJ_P0043822 Dgkg protein_coding protein_coding MGP_AJ_T0043823.1 MGP_AJ_G0022631.1 mouse_genomes_project 16 19085776 19195726 - MGP_AJ_P0043823 Dgkg protein_coding nonsense_mediated_decay MGP_AJ_T0043824.1 MGP_AJ_G0022631.1 mouse_genomes_project 16 19133662 19195566 - Dgkg protein_coding processed_transcript MGP_AJ_T0044350.1 MGP_AJ_G0022770.1 mouse_genomes_project 16 34530955 34536472 - Gm36028 protein_coding retained_intron MGP_AJ_T0044351.1 MGP_AJ_G0022770.1 mouse_genomes_project 16 34530955 34541154 - MGP_AJ_P0044351 Gm36028 protein_coding protein_coding MGP_AJ_T0013167.1 MGP_AJ_G0011262.1 mouse_genomes_project 16 35204406 35206138 + processed_pseudogene processed_pseudogene MGP_AJ_T0013147.1 MGP_AJ_G0011242.1 mouse_genomes_project 16 18577232 18577656 + processed_pseudogene processed_pseudogene MGP_AJ_T0044647.1 MGP_AJ_G0022846.1 mouse_genomes_project 16 51959293 52019216 - MGP_AJ_P0044647 Zpld1 protein_coding protein_coding MGP_AJ_T0044648.1 MGP_AJ_G0022846.1 mouse_genomes_project 16 51959293 52033801 - MGP_AJ_P0044648 Zpld1 protein_coding protein_coding MGP_AJ_T0045093.1 MGP_AJ_G0023012.1 mouse_genomes_project 16 88307296 88311988 - MGP_AJ_P0045093 Dnajc28 protein_coding protein_coding MGP_AJ_T0045094.1 MGP_AJ_G0023012.1 mouse_genomes_project 16 88308714 88311983 - MGP_AJ_P0045094 Dnajc28 protein_coding protein_coding MGP_AJ_T0045095.1 MGP_AJ_G0023012.1 mouse_genomes_project 16 88309825 88311980 - MGP_AJ_P0045095 Dnajc28 protein_coding protein_coding MGP_AJ_T0045096.1 MGP_AJ_G0023012.1 mouse_genomes_project 16 88310090 88312015 - MGP_AJ_P0045096 Dnajc28 protein_coding protein_coding MGP_AJ_T0043506.1 MGP_AJ_G0022562.1 mouse_genomes_project 16 14500748 14529428 - MGP_AJ_P0043506 Prodh protein_coding protein_coding MGP_AJ_T0043512.1 MGP_AJ_G0022562.1 mouse_genomes_project 16 14511969 14529422 - MGP_AJ_P0043512 Prodh protein_coding protein_coding MGP_AJ_T0043513.1 MGP_AJ_G0022562.1 mouse_genomes_project 16 14512373 14519535 - MGP_AJ_P0043513 Prodh protein_coding nonsense_mediated_decay MGP_AJ_T0043514.1 MGP_AJ_G0022562.1 mouse_genomes_project 16 14512503 14520209 - MGP_AJ_P0043514 Prodh protein_coding protein_coding MGP_AJ_T0043515.1 MGP_AJ_G0022562.1 mouse_genomes_project 16 14521278 14522586 - Prodh protein_coding processed_transcript MGP_AJ_T0043516.1 MGP_AJ_G0022562.1 mouse_genomes_project 16 14524470 14529287 - MGP_AJ_P0043516 Prodh protein_coding protein_coding MGP_AJ_T0098412.1 MGP_AJ_G0036396.1 mouse_genomes_project 16 55788879 55789861 - pseudogene pseudogene MGP_AJ_T0044892.1 MGP_AJ_G0022934.1 mouse_genomes_project 16 77892855 78293881 + MGP_AJ_P0044892 Ncam2 protein_coding protein_coding MGP_AJ_T0044893.1 MGP_AJ_G0022934.1 mouse_genomes_project 16 77892855 78321252 + MGP_AJ_P0044893 Ncam2 protein_coding protein_coding MGP_AJ_T0003672.1 MGP_AJ_G0003319.1 mouse_genomes_project 16 32657412 32672553 - Gm15564 antisense antisense MGP_AJ_T0003673.1 MGP_AJ_G0003319.1 mouse_genomes_project 16 32657413 32674697 - Gm15564 antisense antisense MGP_AJ_T0003674.1 MGP_AJ_G0003319.1 mouse_genomes_project 16 32657435 32672613 - Gm15564 antisense antisense MGP_AJ_T0044997.1 MGP_AJ_G0022984.1 mouse_genomes_project 16 85847269 85847734 + MGP_AJ_P0044997 1110057P08Rik protein_coding protein_coding MGP_AJ_T0100897.1 MGP_AJ_G0038863.1 mouse_genomes_project 16 70770026 70770161 - Gm22163 snoRNA snoRNA MGP_AJ_T0045199.1 MGP_AJ_G0023031.1 mouse_genomes_project 16 90454575 90555719 + MGP_AJ_P0045199 Dopey2 protein_coding protein_coding MGP_AJ_T0045200.1 MGP_AJ_G0023031.1 mouse_genomes_project 16 90454672 90555722 + MGP_AJ_P0045200 Dopey2 protein_coding unknown_likely_coding MGP_AJ_T0043701.1 MGP_AJ_G0022608.1 mouse_genomes_project 16 17061544 17070526 + MGP_AJ_P0043701 Vwa5b2 protein_coding protein_coding MGP_AJ_T0043702.1 MGP_AJ_G0022608.1 mouse_genomes_project 16 17061655 17062810 + Vwa5b2 protein_coding processed_transcript MGP_AJ_T0043703.1 MGP_AJ_G0022608.1 mouse_genomes_project 16 17061655 17079858 + MGP_AJ_P0043703 Vwa5b2 protein_coding protein_coding MGP_AJ_T0043704.1 MGP_AJ_G0022608.1 mouse_genomes_project 16 17061657 17063260 + Vwa5b2 protein_coding processed_transcript MGP_AJ_T0043705.1 MGP_AJ_G0022608.1 mouse_genomes_project 16 17061924 17063294 + Vwa5b2 protein_coding retained_intron MGP_AJ_T0043706.1 MGP_AJ_G0022608.1 mouse_genomes_project 16 17062132 17062605 + Vwa5b2 protein_coding retained_intron MGP_AJ_T0043707.1 MGP_AJ_G0022608.1 mouse_genomes_project 16 17062163 17064463 + Vwa5b2 protein_coding retained_intron MGP_AJ_T0043708.1 MGP_AJ_G0022608.1 mouse_genomes_project 16 17062219 17070521 + MGP_AJ_P0043708 Vwa5b2 protein_coding nonsense_mediated_decay MGP_AJ_T0043709.1 MGP_AJ_G0022608.1 mouse_genomes_project 16 17063229 17079855 + MGP_AJ_P0043709 Vwa5b2 protein_coding protein_coding MGP_AJ_T0043710.1 MGP_AJ_G0022608.1 mouse_genomes_project 16 17063235 17079864 + MGP_AJ_P0043710 Vwa5b2 protein_coding unknown_likely_coding MGP_AJ_T0043711.1 MGP_AJ_G0022608.1 mouse_genomes_project 16 17074833 17079858 + Vwa5b2 protein_coding retained_intron MGP_AJ_T0043154.1 MGP_AJ_G0022485.1 mouse_genomes_project 16 7634314 7670171 - MGP_AJ_P0043154 Gspt1 protein_coding protein_coding MGP_AJ_T0043155.1 MGP_AJ_G0022485.1 mouse_genomes_project 16 7635074 7670110 - MGP_AJ_P0043155 Gspt1 protein_coding protein_coding MGP_AJ_T0043156.1 MGP_AJ_G0022485.1 mouse_genomes_project 16 7635423 7639521 - MGP_AJ_P0043156 Gspt1 protein_coding protein_coding MGP_AJ_T0043157.1 MGP_AJ_G0022485.1 mouse_genomes_project 16 7637607 7643540 - Gspt1 protein_coding retained_intron MGP_AJ_T0043158.1 MGP_AJ_G0022485.1 mouse_genomes_project 16 7645923 7653555 - Gspt1 protein_coding retained_intron MGP_AJ_T0000044.1 MGP_AJ_G0000035.1 mouse_genomes_project 16 15533441 15533479 - MGP_AJ_P0000044 Iglj3p IG_J_gene IG_J_gene MGP_AJ_T0043757.1 MGP_AJ_G0022614.1 mouse_genomes_project 16 17170088 17176084 + MGP_AJ_P0043757 Fam131a protein_coding protein_coding MGP_AJ_T0043758.1 MGP_AJ_G0022614.1 mouse_genomes_project 16 17171711 17180048 + MGP_AJ_P0043758 Fam131a protein_coding protein_coding MGP_AJ_T0043759.1 MGP_AJ_G0022614.1 mouse_genomes_project 16 17171920 17178884 + MGP_AJ_P0043759 Fam131a protein_coding protein_coding MGP_AJ_T0043760.1 MGP_AJ_G0022614.1 mouse_genomes_project 16 17172978 17178659 + MGP_AJ_P0043760 Fam131a protein_coding protein_coding MGP_AJ_T0010112.1 MGP_AJ_G0008234.1 mouse_genomes_project 16 9868573 9868674 - Mir6365 miRNA miRNA MGP_AJ_T0044703.1 MGP_AJ_G0022859.1 mouse_genomes_project 16 53551488 53639375 - MGP_AJ_P0044703 Tmem45a protein_coding protein_coding MGP_AJ_T0044704.1 MGP_AJ_G0022859.1 mouse_genomes_project 16 53552818 53556112 - Tmem45a protein_coding processed_transcript MGP_AJ_T0044705.1 MGP_AJ_G0022859.1 mouse_genomes_project 16 53571369 53580311 - MGP_AJ_P0044705 Tmem45a protein_coding protein_coding MGP_AJ_T0013193.1 MGP_AJ_G0011288.1 mouse_genomes_project 16 72427101 72427531 - processed_pseudogene processed_pseudogene MGP_AJ_T0044628.1 MGP_AJ_G0022842.1 mouse_genomes_project 16 46938226 47181962 - MGP_AJ_P0044628 Bbx protein_coding protein_coding MGP_AJ_T0044629.1 MGP_AJ_G0022842.1 mouse_genomes_project 16 46942162 47181912 - MGP_AJ_P0044629 Bbx protein_coding protein_coding MGP_AJ_T0044630.1 MGP_AJ_G0022842.1 mouse_genomes_project 16 46942998 47181961 - MGP_AJ_P0044630 Bbx protein_coding protein_coding MGP_AJ_T0044631.1 MGP_AJ_G0022842.1 mouse_genomes_project 16 46943539 47079212 - MGP_AJ_P0044631 Bbx protein_coding protein_coding MGP_AJ_T0044632.1 MGP_AJ_G0022842.1 mouse_genomes_project 16 46956858 47181946 - MGP_AJ_P0044632 Bbx protein_coding protein_coding MGP_AJ_T0044633.1 MGP_AJ_G0022842.1 mouse_genomes_project 16 46964936 47181961 - MGP_AJ_P0044633 Bbx protein_coding protein_coding MGP_AJ_T0044634.1 MGP_AJ_G0022842.1 mouse_genomes_project 16 46971226 47179496 - Bbx protein_coding processed_transcript MGP_AJ_T0044635.1 MGP_AJ_G0022842.1 mouse_genomes_project 16 47175544 47181881 - Bbx protein_coding retained_intron MGP_AJ_T0044636.1 MGP_AJ_G0022842.1 mouse_genomes_project 16 47176964 47181919 - Bbx protein_coding processed_transcript MGP_AJ_T0043838.1 MGP_AJ_G0022638.1 mouse_genomes_project 16 19540840 19567377 - MGP_AJ_P0043838 protein_coding unknown_likely_coding MGP_AJ_T0043633.1 MGP_AJ_G0022593.1 mouse_genomes_project 16 16104343 16108343 - MGP_AJ_P0043633 protein_coding protein_coding MGP_AJ_T0044262.1 MGP_AJ_G0022754.1 mouse_genomes_project 16 33174372 33243784 - MGP_AJ_P0044262 Casr protein_coding protein_coding MGP_AJ_T0044263.1 MGP_AJ_G0022754.1 mouse_genomes_project 16 33174372 33243784 - MGP_AJ_P0044263 Casr protein_coding protein_coding MGP_AJ_T0044264.1 MGP_AJ_G0022754.1 mouse_genomes_project 16 33175143 33243256 - MGP_AJ_P0044264 Casr protein_coding protein_coding MGP_AJ_T0044265.1 MGP_AJ_G0022754.1 mouse_genomes_project 16 33198505 33243791 - Casr protein_coding processed_transcript MGP_AJ_T0043927.1 MGP_AJ_G0022667.1 mouse_genomes_project 16 25826583 25968909 - MGP_AJ_P0043927 Atp13a5 protein_coding protein_coding MGP_AJ_T0043928.1 MGP_AJ_G0022667.1 mouse_genomes_project 16 25826646 25968883 - MGP_AJ_P0043928 Atp13a5 protein_coding nonsense_mediated_decay MGP_AJ_T0043929.1 MGP_AJ_G0022667.1 mouse_genomes_project 16 25827192 25968844 - MGP_AJ_P0043929 Atp13a5 protein_coding protein_coding MGP_AJ_T0043930.1 MGP_AJ_G0022667.1 mouse_genomes_project 16 25923927 25968760 - MGP_AJ_P0043930 Atp13a5 protein_coding protein_coding MGP_AJ_T0017502.1 MGP_AJ_G0015298.1 mouse_genomes_project 16 63374316 63381827 + 1700010K23Rik processed_transcript processed_transcript MGP_AJ_T0042961.1 MGP_AJ_G0022433.1 mouse_genomes_project 16 1052672 1086975 + MGP_AJ_P0042961 Hmox2 protein_coding protein_coding MGP_AJ_T0042962.1 MGP_AJ_G0022433.1 mouse_genomes_project 16 1052674 1088869 + MGP_AJ_P0042962 Hmox2 protein_coding protein_coding MGP_AJ_T0042963.1 MGP_AJ_G0022433.1 mouse_genomes_project 16 1067891 1088376 + MGP_AJ_P0042963 Hmox2 protein_coding protein_coding MGP_AJ_T0042965.1 MGP_AJ_G0022433.1 mouse_genomes_project 16 1079185 1087217 + MGP_AJ_P0042965 Hmox2 protein_coding protein_coding MGP_AJ_T0042966.1 MGP_AJ_G0022433.1 mouse_genomes_project 16 1079185 1088372 + MGP_AJ_P0042966 Hmox2 protein_coding protein_coding MGP_AJ_T0044245.1 MGP_AJ_G0022743.1 mouse_genomes_project 16 32765391 32785874 + MGP_AJ_P0044245 Ccdc58 protein_coding protein_coding MGP_AJ_T0044246.1 MGP_AJ_G0022743.1 mouse_genomes_project 16 32765391 32785874 + MGP_AJ_P0044246 Ccdc58 protein_coding protein_coding MGP_AJ_T0044247.1 MGP_AJ_G0022743.1 mouse_genomes_project 16 32775106 32785874 + MGP_AJ_P0044247 Ccdc58 protein_coding protein_coding MGP_AJ_T0044890.1 MGP_AJ_G0022933.1 mouse_genomes_project 16 75641983 75774446 - MGP_AJ_P0044890 Tmprss15 protein_coding protein_coding MGP_AJ_T0044891.1 MGP_AJ_G0022933.1 mouse_genomes_project 16 75642439 75774451 - MGP_AJ_P0044891 Tmprss15 protein_coding protein_coding MGP_AJ_T0100892.1 MGP_AJ_G0038858.1 mouse_genomes_project 16 55468749 55468878 - Gm26019 snoRNA snoRNA MGP_AJ_T0098409.1 MGP_AJ_G0036393.1 mouse_genomes_project 16 28577802 28578227 - pseudogene pseudogene MGP_AJ_T0043922.1 MGP_AJ_G0022665.1 mouse_genomes_project 16 25422635 25523245 - MGP_AJ_P0043922 Mb21d2 protein_coding protein_coding MGP_AJ_T0100866.1 MGP_AJ_G0038832.1 mouse_genomes_project 16 19676794 19676863 + Snord2 snoRNA snoRNA MGP_AJ_T0042984.1 MGP_AJ_G0022439.1 mouse_genomes_project 16 1271781 1295577 - MGP_AJ_P0042984 Anks3 protein_coding protein_coding MGP_AJ_T0011408.1 MGP_AJ_G0009530.1 mouse_genomes_project 16 33192979 33193297 - Gm25902 misc_RNA misc_RNA MGP_AJ_T0043875.1 MGP_AJ_G0022645.1 mouse_genomes_project 16 20006752 20011580 + MGP_AJ_P0043875 Rtp1 protein_coding protein_coding MGP_AJ_T0000952.1 MGP_AJ_G0000885.1 mouse_genomes_project 16 15709942 15711250 + TEC TEC MGP_AJ_T0013142.1 MGP_AJ_G0011237.1 mouse_genomes_project 16 15612795 15620589 - processed_pseudogene processed_pseudogene MGP_AJ_T0044603.1 MGP_AJ_G0022835.1 mouse_genomes_project 16 45652833 45654724 + MGP_AJ_P0044603 Retnlg protein_coding protein_coding MGP_AJ_T0099586.1 MGP_AJ_G0037552.1 mouse_genomes_project 16 1396139 1396247 - Gm23483 snRNA snRNA MGP_AJ_T0013169.1 MGP_AJ_G0011264.1 mouse_genomes_project 16 35445532 35447113 - processed_pseudogene processed_pseudogene MGP_AJ_T0043538.1 MGP_AJ_G0022569.1 mouse_genomes_project 16 14746133 14770419 - MGP_AJ_P0043538 Tango2 protein_coding nonsense_mediated_decay MGP_AJ_T0043539.1 MGP_AJ_G0022569.1 mouse_genomes_project 16 14746135 14789865 - MGP_AJ_P0043539 Tango2 protein_coding protein_coding MGP_AJ_T0043540.1 MGP_AJ_G0022569.1 mouse_genomes_project 16 14746531 14749454 - Tango2 protein_coding retained_intron MGP_AJ_T0043541.1 MGP_AJ_G0022569.1 mouse_genomes_project 16 14753295 14756762 - Tango2 protein_coding processed_transcript MGP_AJ_T0043542.1 MGP_AJ_G0022569.1 mouse_genomes_project 16 14756088 14758343 - Tango2 protein_coding retained_intron MGP_AJ_T0043543.1 MGP_AJ_G0022569.1 mouse_genomes_project 16 14756196 14794610 - MGP_AJ_P0043543 Tango2 protein_coding nonsense_mediated_decay MGP_AJ_T0043544.1 MGP_AJ_G0022569.1 mouse_genomes_project 16 14756204 14789840 - MGP_AJ_P0043544 Tango2 protein_coding protein_coding MGP_AJ_T0043545.1 MGP_AJ_G0022569.1 mouse_genomes_project 16 14757733 14770420 - Tango2 protein_coding retained_intron MGP_AJ_T0043546.1 MGP_AJ_G0022569.1 mouse_genomes_project 16 14762313 14770420 - Tango2 protein_coding retained_intron MGP_AJ_T0043547.1 MGP_AJ_G0022569.1 mouse_genomes_project 16 14766819 14794590 - Tango2 protein_coding retained_intron MGP_AJ_T0010132.1 MGP_AJ_G0008254.1 mouse_genomes_project 16 27862470 27862565 + Gm27415 miRNA miRNA MGP_AJ_T0045077.1 MGP_AJ_G0023008.1 mouse_genomes_project 16 88094497 88113992 + MGP_AJ_P0045077 Il10rb protein_coding nonsense_mediated_decay MGP_AJ_T0045078.1 MGP_AJ_G0023008.1 mouse_genomes_project 16 88094568 88114004 + MGP_AJ_P0045078 Il10rb protein_coding protein_coding MGP_AJ_T0045079.1 MGP_AJ_G0023008.1 mouse_genomes_project 16 88094653 88108486 + Il10rb protein_coding retained_intron MGP_AJ_T0045080.1 MGP_AJ_G0023008.1 mouse_genomes_project 16 88094653 88113095 + MGP_AJ_P0045080 Il10rb protein_coding nonsense_mediated_decay MGP_AJ_T0045081.1 MGP_AJ_G0023008.1 mouse_genomes_project 16 88094777 88102887 + Il10rb protein_coding processed_transcript MGP_AJ_T0013135.1 MGP_AJ_G0011230.1 mouse_genomes_project 16 13257919 13258169 - processed_pseudogene processed_pseudogene MGP_AJ_T0043230.1 MGP_AJ_G0022502.1 mouse_genomes_project 16 10394129 10508839 + MGP_AJ_P0043230 2900011O08Rik protein_coding protein_coding MGP_AJ_T0043271.1 MGP_AJ_G0022517.1 mouse_genomes_project 16 12709226 12715131 + MGP_AJ_P0043271 Yars2 protein_coding protein_coding MGP_AJ_T0043272.1 MGP_AJ_G0022517.1 mouse_genomes_project 16 12709235 12713712 + Yars2 protein_coding retained_intron MGP_AJ_T0043273.1 MGP_AJ_G0022517.1 mouse_genomes_project 16 12709239 12715829 + MGP_AJ_P0043273 Yars2 protein_coding protein_coding MGP_AJ_T0043274.1 MGP_AJ_G0022517.1 mouse_genomes_project 16 12709242 12715821 + MGP_AJ_P0043274 Yars2 protein_coding nonsense_mediated_decay MGP_AJ_T0043275.1 MGP_AJ_G0022517.1 mouse_genomes_project 16 12709814 12713430 + Yars2 protein_coding processed_transcript MGP_AJ_T0043276.1 MGP_AJ_G0022517.1 mouse_genomes_project 16 12710861 12713569 + MGP_AJ_P0043276 Yars2 protein_coding protein_coding MGP_AJ_T0099614.1 MGP_AJ_G0037580.1 mouse_genomes_project 16 33092721 33092825 + Gm22263 snRNA snRNA MGP_AJ_T0044225.1 MGP_AJ_G0022738.1 mouse_genomes_project 16 32616215 32629396 - MGP_AJ_P0044225 Dtx3l protein_coding protein_coding MGP_AJ_T0044226.1 MGP_AJ_G0022738.1 mouse_genomes_project 16 32622104 32629396 - MGP_AJ_P0044226 Dtx3l protein_coding protein_coding MGP_AJ_T0044540.1 MGP_AJ_G0022815.1 mouse_genomes_project 16 42027016 42055153 + MGP_AJ_P0044540 Btla protein_coding protein_coding MGP_AJ_T0044541.1 MGP_AJ_G0022815.1 mouse_genomes_project 16 42027038 42055156 + MGP_AJ_P0044541 Btla protein_coding protein_coding MGP_AJ_T0045090.1 MGP_AJ_G0023011.1 mouse_genomes_project 16 88268114 88291142 - MGP_AJ_P0045090 Tmem50b protein_coding protein_coding MGP_AJ_T0045091.1 MGP_AJ_G0023011.1 mouse_genomes_project 16 88269369 88291006 - MGP_AJ_P0045091 Tmem50b protein_coding nonsense_mediated_decay MGP_AJ_T0045092.1 MGP_AJ_G0023011.1 mouse_genomes_project 16 88273813 88291142 - MGP_AJ_P0045092 Tmem50b protein_coding nonsense_mediated_decay MGP_AJ_T0043798.1 MGP_AJ_G0022625.1 mouse_genomes_project 16 18458136 18468560 - MGP_AJ_P0043798 Tmem41a protein_coding protein_coding MGP_AJ_T0044359.1 MGP_AJ_G0022775.1 mouse_genomes_project 16 34993567 35038645 - MGP_AJ_P0044359 Maats1 protein_coding protein_coding MGP_AJ_T0044360.1 MGP_AJ_G0022775.1 mouse_genomes_project 16 35018221 35038612 - MGP_AJ_P0044360 Maats1 protein_coding protein_coding MGP_AJ_T0044361.1 MGP_AJ_G0022775.1 mouse_genomes_project 16 35028928 35038943 - Maats1 protein_coding processed_transcript MGP_AJ_T0043116.1 MGP_AJ_G0022479.1 mouse_genomes_project 16 7246879 7254900 + MGP_AJ_P0043116 Rmi2 protein_coding protein_coding MGP_AJ_T0043117.1 MGP_AJ_G0022479.1 mouse_genomes_project 16 7246888 7304011 + MGP_AJ_P0043117 Rmi2 protein_coding nonsense_mediated_decay MGP_AJ_T0003659.1 MGP_AJ_G0003309.1 mouse_genomes_project 16 19048572 19054761 + 9230117E06Rik antisense antisense MGP_AJ_T0044595.1 MGP_AJ_G0022828.1 mouse_genomes_project 16 44844248 44845031 + MGP_AJ_P0044595 Gm7275 protein_coding protein_coding MGP_AJ_T0045167.1 MGP_AJ_G0023019.1 mouse_genomes_project 16 88759624 88813587 + MGP_AJ_P0045167 Mrps6 protein_coding protein_coding MGP_AJ_T0045170.1 MGP_AJ_G0023019.1 mouse_genomes_project 16 88807630 88813587 + Mrps6 protein_coding processed_transcript MGP_AJ_T0010138.1 MGP_AJ_G0008260.1 mouse_genomes_project 16 37903602 37903662 + miRNA miRNA MGP_AJ_T0044966.1 MGP_AJ_G0022957.1 mouse_genomes_project 16 85368238 85369032 - MGP_AJ_P0044966 2310061N02Rik protein_coding protein_coding MGP_AJ_T0043861.1 MGP_AJ_G0022641.1 mouse_genomes_project 16 19682829 19696701 - MGP_AJ_P0043861 Rfc4 protein_coding protein_coding MGP_AJ_T0043862.1 MGP_AJ_G0022641.1 mouse_genomes_project 16 19682829 19696681 - MGP_AJ_P0043862 Rfc4 protein_coding protein_coding MGP_AJ_T0043863.1 MGP_AJ_G0022641.1 mouse_genomes_project 16 19682869 19683619 - Rfc4 protein_coding retained_intron MGP_AJ_T0043864.1 MGP_AJ_G0022641.1 mouse_genomes_project 16 19683581 19696655 - MGP_AJ_P0043864 Rfc4 protein_coding nonsense_mediated_decay MGP_AJ_T0043865.1 MGP_AJ_G0022641.1 mouse_genomes_project 16 19689772 19696692 - MGP_AJ_P0043865 Rfc4 protein_coding protein_coding MGP_AJ_T0099624.1 MGP_AJ_G0037590.1 mouse_genomes_project 16 51709574 51709681 + Gm22977 snRNA snRNA MGP_AJ_T0044150.1 MGP_AJ_G0022717.1 mouse_genomes_project 16 29732611 29806426 + MGP_AJ_P0044150 Lmln protein_coding protein_coding MGP_AJ_T0044151.1 MGP_AJ_G0022717.1 mouse_genomes_project 16 29768963 29782461 + Lmln protein_coding retained_intron MGP_AJ_T0044152.1 MGP_AJ_G0022717.1 mouse_genomes_project 16 29794241 29802627 + Lmln protein_coding retained_intron MGP_AJ_T0044153.1 MGP_AJ_G0022717.1 mouse_genomes_project 16 29802980 29804322 + Lmln protein_coding processed_transcript MGP_AJ_T0043409.1 MGP_AJ_G0022543.1 mouse_genomes_project 16 13936812 13954997 + MGP_AJ_P0043409 Lztr1 protein_coding protein_coding MGP_AJ_T0043410.1 MGP_AJ_G0022543.1 mouse_genomes_project 16 13937092 13954995 + MGP_AJ_P0043410 Lztr1 protein_coding protein_coding MGP_AJ_T0043411.1 MGP_AJ_G0022543.1 mouse_genomes_project 16 13937097 13952933 + Lztr1 protein_coding retained_intron MGP_AJ_T0043412.1 MGP_AJ_G0022543.1 mouse_genomes_project 16 13937097 13940350 + Lztr1 protein_coding retained_intron MGP_AJ_T0043413.1 MGP_AJ_G0022543.1 mouse_genomes_project 16 13937336 13944138 + Lztr1 protein_coding processed_transcript MGP_AJ_T0043414.1 MGP_AJ_G0022543.1 mouse_genomes_project 16 13939186 13949129 + Lztr1 protein_coding processed_transcript MGP_AJ_T0043415.1 MGP_AJ_G0022543.1 mouse_genomes_project 16 13943914 13947650 + Lztr1 protein_coding processed_transcript MGP_AJ_T0043416.1 MGP_AJ_G0022543.1 mouse_genomes_project 16 13946203 13948648 + Lztr1 protein_coding retained_intron MGP_AJ_T0043417.1 MGP_AJ_G0022543.1 mouse_genomes_project 16 13949037 13954995 + MGP_AJ_P0043417 Lztr1 protein_coding protein_coding MGP_AJ_T0043418.1 MGP_AJ_G0022543.1 mouse_genomes_project 16 13950762 13952337 + Lztr1 protein_coding retained_intron MGP_AJ_T0043419.1 MGP_AJ_G0022543.1 mouse_genomes_project 16 13952179 13954435 + Lztr1 protein_coding retained_intron MGP_AJ_T0043629.1 MGP_AJ_G0022589.1 mouse_genomes_project 16 15957075 15958014 - MGP_AJ_P0043629 Olfr167 protein_coding protein_coding MGP_AJ_T0042896.1 MGP_AJ_G0022421.1 mouse_genomes_project 16 364495 366810 + MGP_AJ_P0042896 Dnase1 protein_coding protein_coding MGP_AJ_T0042897.1 MGP_AJ_G0022421.1 mouse_genomes_project 16 364523 367578 + MGP_AJ_P0042897 Dnase1 protein_coding protein_coding MGP_AJ_T0042898.1 MGP_AJ_G0022421.1 mouse_genomes_project 16 364526 365575 + MGP_AJ_P0042898 Dnase1 protein_coding protein_coding MGP_AJ_T0042899.1 MGP_AJ_G0022421.1 mouse_genomes_project 16 364584 367578 + MGP_AJ_P0042899 Dnase1 protein_coding protein_coding MGP_AJ_T0042900.1 MGP_AJ_G0022421.1 mouse_genomes_project 16 364651 367577 + Dnase1 protein_coding retained_intron MGP_AJ_T0042901.1 MGP_AJ_G0022421.1 mouse_genomes_project 16 364654 367578 + Dnase1 protein_coding retained_intron MGP_AJ_T0042902.1 MGP_AJ_G0022421.1 mouse_genomes_project 16 364708 367429 + MGP_AJ_P0042902 Dnase1 protein_coding nonsense_mediated_decay MGP_AJ_T0042903.1 MGP_AJ_G0022421.1 mouse_genomes_project 16 364829 365814 + Dnase1 protein_coding retained_intron MGP_AJ_T0042904.1 MGP_AJ_G0022421.1 mouse_genomes_project 16 364857 366893 + Dnase1 protein_coding retained_intron MGP_AJ_T0042905.1 MGP_AJ_G0022421.1 mouse_genomes_project 16 365775 366425 + Dnase1 protein_coding retained_intron MGP_AJ_T0042906.1 MGP_AJ_G0022421.1 mouse_genomes_project 16 366683 367578 + MGP_AJ_P0042906 Dnase1 protein_coding protein_coding MGP_AJ_T0044062.1 MGP_AJ_G0022699.1 mouse_genomes_project 16 28895190 28898339 + MGP_AJ_P0044062 Smco1 protein_coding protein_coding MGP_AJ_T0044410.1 MGP_AJ_G0022790.1 mouse_genomes_project 16 36674690 37664946 + MGP_AJ_P0044410 Lsamp protein_coding protein_coding MGP_AJ_T0044411.1 MGP_AJ_G0022790.1 mouse_genomes_project 16 36674700 38945350 + MGP_AJ_P0044411 Lsamp protein_coding protein_coding MGP_AJ_T0044412.1 MGP_AJ_G0022790.1 mouse_genomes_project 16 36674715 37895221 + MGP_AJ_P0044412 Lsamp protein_coding protein_coding MGP_AJ_T0044413.1 MGP_AJ_G0022790.1 mouse_genomes_project 16 36674715 38182100 + MGP_AJ_P0044413 Lsamp protein_coding protein_coding MGP_AJ_T0044414.1 MGP_AJ_G0022790.1 mouse_genomes_project 16 36674924 37355958 + Lsamp protein_coding processed_transcript MGP_AJ_T0044415.1 MGP_AJ_G0022790.1 mouse_genomes_project 16 38307432 38915272 + MGP_AJ_P0044415 Lsamp protein_coding protein_coding MGP_AJ_T0044416.1 MGP_AJ_G0022790.1 mouse_genomes_project 16 38307611 38950738 + MGP_AJ_P0044416 Lsamp protein_coding protein_coding MGP_AJ_T0044417.1 MGP_AJ_G0022790.1 mouse_genomes_project 16 38307993 38313815 + MGP_AJ_P0044417 Lsamp protein_coding protein_coding MGP_AJ_T0044418.1 MGP_AJ_G0022790.1 mouse_genomes_project 16 38913044 38943513 + MGP_AJ_P0044418 Lsamp protein_coding protein_coding MGP_AJ_T0044419.1 MGP_AJ_G0022790.1 mouse_genomes_project 16 38913085 38943338 + MGP_AJ_P0044419 Lsamp protein_coding protein_coding MGP_AJ_T0017503.1 MGP_AJ_G0015299.1 mouse_genomes_project 16 73931500 74296264 + processed_transcript lincRNA MGP_AJ_T0017504.1 MGP_AJ_G0015299.1 mouse_genomes_project 16 73931500 74057553 + processed_transcript lincRNA MGP_AJ_T0017505.1 MGP_AJ_G0015299.1 mouse_genomes_project 16 73931502 74294795 + processed_transcript lincRNA MGP_AJ_T0017506.1 MGP_AJ_G0015299.1 mouse_genomes_project 16 74022855 74379776 + processed_transcript lincRNA MGP_AJ_T0017507.1 MGP_AJ_G0015299.1 mouse_genomes_project 16 74022863 74054727 + processed_transcript lincRNA MGP_AJ_T0017508.1 MGP_AJ_G0015299.1 mouse_genomes_project 16 74022880 74292765 + processed_transcript lincRNA MGP_AJ_T0017509.1 MGP_AJ_G0015299.1 mouse_genomes_project 16 74022934 74296285 + processed_transcript lincRNA MGP_AJ_T0017510.1 MGP_AJ_G0015299.1 mouse_genomes_project 16 74023003 74256124 + processed_transcript lincRNA MGP_AJ_T0017511.1 MGP_AJ_G0015299.1 mouse_genomes_project 16 74023179 74391495 + processed_transcript lincRNA MGP_AJ_T0017512.1 MGP_AJ_G0015299.1 mouse_genomes_project 16 74151957 74154440 + processed_transcript TEC MGP_AJ_T0017513.1 MGP_AJ_G0015299.1 mouse_genomes_project 16 74195376 74296372 + processed_transcript lincRNA MGP_AJ_T0017514.1 MGP_AJ_G0015299.1 mouse_genomes_project 16 74195583 74391499 + processed_transcript lincRNA MGP_AJ_T0017515.1 MGP_AJ_G0015299.1 mouse_genomes_project 16 74291668 74293915 + processed_transcript TEC MGP_AJ_T0017516.1 MGP_AJ_G0015299.1 mouse_genomes_project 16 74292206 74292808 + processed_transcript lincRNA MGP_AJ_T0017517.1 MGP_AJ_G0015299.1 mouse_genomes_project 16 74369448 74391493 + processed_transcript lincRNA MGP_AJ_T0017518.1 MGP_AJ_G0015299.1 mouse_genomes_project 16 74379487 74391493 + processed_transcript lincRNA MGP_AJ_T0043712.1 MGP_AJ_G0022609.1 mouse_genomes_project 16 17079931 17085246 - MGP_AJ_P0043712 Alg3 protein_coding protein_coding MGP_AJ_T0043713.1 MGP_AJ_G0022609.1 mouse_genomes_project 16 17079944 17085216 - MGP_AJ_P0043713 Alg3 protein_coding unknown_likely_coding MGP_AJ_T0043714.1 MGP_AJ_G0022609.1 mouse_genomes_project 16 17079952 17085209 - MGP_AJ_P0043714 Alg3 protein_coding nonsense_mediated_decay MGP_AJ_T0043715.1 MGP_AJ_G0022609.1 mouse_genomes_project 16 17079953 17085225 - MGP_AJ_P0043715 Alg3 protein_coding nonsense_mediated_decay MGP_AJ_T0043716.1 MGP_AJ_G0022609.1 mouse_genomes_project 16 17083227 17085230 - Alg3 protein_coding processed_transcript MGP_AJ_T0043911.1 MGP_AJ_G0022659.1 mouse_genomes_project 16 23549656 23582281 - MGP_AJ_P0043911 Gmnc protein_coding protein_coding MGP_AJ_T0043912.1 MGP_AJ_G0022659.1 mouse_genomes_project 16 23552674 23560259 - MGP_AJ_P0043912 Gmnc protein_coding unknown_likely_coding MGP_AJ_T0102358.1 MGP_AJ_G0040100.1 mouse_genomes_project 16 13080671 13080792 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0099612.1 MGP_AJ_G0037578.1 mouse_genomes_project 16 33042557 33042662 + Gm24569 snRNA snRNA MGP_AJ_T0003688.1 MGP_AJ_G0003331.1 mouse_genomes_project 16 57389049 57395241 + Gm9017 antisense antisense MGP_AJ_T0003689.1 MGP_AJ_G0003331.1 mouse_genomes_project 16 57390038 57395521 + Gm9017 antisense antisense MGP_AJ_T0044107.1 MGP_AJ_G0022711.1 mouse_genomes_project 16 29441396 29448133 - MGP_AJ_P0044107 Gm933 protein_coding protein_coding MGP_AJ_T0006835.1 MGP_AJ_G0005630.1 mouse_genomes_project 16 13455807 13457399 + 1700056N10Rik lincRNA lincRNA MGP_AJ_T0045070.1 MGP_AJ_G0023005.1 mouse_genomes_project 16 87954937 87957099 + MGP_AJ_P0045070 Olig1 protein_coding protein_coding MGP_AJ_T0099127.1 MGP_AJ_G0037095.1 mouse_genomes_project 16 89183685 89203154 + 2410124H12Rik sense_overlapping sense_overlapping MGP_AJ_T0013187.1 MGP_AJ_G0011282.1 mouse_genomes_project 16 57412936 57413872 + processed_pseudogene processed_pseudogene MGP_AJ_T0000968.1 MGP_AJ_G0000900.1 mouse_genomes_project 16 74237337 74239666 + TEC TEC MGP_AJ_T0044374.1 MGP_AJ_G0022779.1 mouse_genomes_project 16 35090016 35125211 - MGP_AJ_P0044374 Pla1a protein_coding protein_coding MGP_AJ_T0013122.1 MGP_AJ_G0011217.1 mouse_genomes_project 16 6444146 6444353 - processed_pseudogene processed_pseudogene MGP_AJ_T0043098.1 MGP_AJ_G0022472.1 mouse_genomes_project 16 6952967 7154871 + MGP_AJ_P0043098 Clec16a protein_coding protein_coding MGP_AJ_T0043099.1 MGP_AJ_G0022472.1 mouse_genomes_project 16 6952967 7154871 + MGP_AJ_P0043099 Clec16a protein_coding protein_coding MGP_AJ_T0043100.1 MGP_AJ_G0022472.1 mouse_genomes_project 16 6952992 7154871 + MGP_AJ_P0043100 Clec16a protein_coding protein_coding MGP_AJ_T0043101.1 MGP_AJ_G0022472.1 mouse_genomes_project 16 6953005 6972423 + Clec16a protein_coding processed_transcript MGP_AJ_T0043102.1 MGP_AJ_G0022472.1 mouse_genomes_project 16 6953026 7132485 + MGP_AJ_P0043102 Clec16a protein_coding protein_coding MGP_AJ_T0043103.1 MGP_AJ_G0022472.1 mouse_genomes_project 16 6953037 7102310 + MGP_AJ_P0043103 Clec16a protein_coding protein_coding MGP_AJ_T0043104.1 MGP_AJ_G0022472.1 mouse_genomes_project 16 6953037 6967367 + MGP_AJ_P0043104 Clec16a protein_coding protein_coding MGP_AJ_T0043105.1 MGP_AJ_G0022472.1 mouse_genomes_project 16 6953037 7151817 + MGP_AJ_P0043105 Clec16a protein_coding nonsense_mediated_decay MGP_AJ_T0043106.1 MGP_AJ_G0022472.1 mouse_genomes_project 16 7009208 7152458 + MGP_AJ_P0043106 Clec16a protein_coding protein_coding MGP_AJ_T0043107.1 MGP_AJ_G0022472.1 mouse_genomes_project 16 7019342 7039116 + Clec16a protein_coding processed_transcript MGP_AJ_T0043108.1 MGP_AJ_G0022472.1 mouse_genomes_project 16 7038374 7047938 + Clec16a protein_coding processed_transcript MGP_AJ_T0099594.1 MGP_AJ_G0037560.1 mouse_genomes_project 16 13767319 13767426 - Gm24927 snRNA snRNA MGP_AJ_T0006879.1 MGP_AJ_G0005664.1 mouse_genomes_project 16 84442177 84451593 + 2810407A14Rik lincRNA lincRNA MGP_AJ_T0006880.1 MGP_AJ_G0005664.1 mouse_genomes_project 16 84445670 84499673 + 2810407A14Rik lincRNA lincRNA MGP_AJ_T0044200.1 MGP_AJ_G0022728.1 mouse_genomes_project 16 31367190 31401600 + MGP_AJ_P0044200 Ccdc14 protein_coding protein_coding MGP_AJ_T0102366.1 MGP_AJ_G0040108.1 mouse_genomes_project 16 55788829 55789861 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0013198.1 MGP_AJ_G0011293.1 mouse_genomes_project 16 80042248 80042844 - processed_pseudogene processed_pseudogene MGP_AJ_T0006881.1 MGP_AJ_G0005665.1 mouse_genomes_project 16 87231189 87231910 + 1110008E08Rik lincRNA lincRNA MGP_AJ_T0006882.1 MGP_AJ_G0005665.1 mouse_genomes_project 16 87231189 87231912 + 1110008E08Rik lincRNA lincRNA MGP_AJ_T0098928.1 MGP_AJ_G0036907.1 mouse_genomes_project 16 10726812 10728024 - Gm15869 sense_intronic sense_intronic MGP_AJ_T0044656.1 MGP_AJ_G0022850.1 mouse_genomes_project 16 52697110 52703006 + MGP_AJ_P0044656 Rpl24 protein_coding protein_coding MGP_AJ_T0044657.1 MGP_AJ_G0022850.1 mouse_genomes_project 16 52697256 52703006 + Rpl24 protein_coding processed_transcript MGP_AJ_T0044658.1 MGP_AJ_G0022850.1 mouse_genomes_project 16 52697382 52701345 + Rpl24 protein_coding retained_intron MGP_AJ_T0044659.1 MGP_AJ_G0022850.1 mouse_genomes_project 16 52701565 52703006 + Rpl24 protein_coding retained_intron MGP_AJ_T0099590.1 MGP_AJ_G0037556.1 mouse_genomes_project 16 7408369 7408553 + Gm24961 snRNA snRNA MGP_AJ_T0044542.1 MGP_AJ_G0022816.1 mouse_genomes_project 16 42201250 42228072 - MGP_AJ_P0044542 Cd200 protein_coding protein_coding MGP_AJ_T0044543.1 MGP_AJ_G0022816.1 mouse_genomes_project 16 42201298 42227894 - MGP_AJ_P0044543 Cd200 protein_coding protein_coding MGP_AJ_T0044544.1 MGP_AJ_G0022816.1 mouse_genomes_project 16 42202433 42227991 - Cd200 protein_coding processed_transcript MGP_AJ_T0044545.1 MGP_AJ_G0022816.1 mouse_genomes_project 16 42211338 42219391 - MGP_AJ_P0044545 Cd200 protein_coding nonsense_mediated_decay MGP_AJ_T0044546.1 MGP_AJ_G0022816.1 mouse_genomes_project 16 42211338 42227932 - MGP_AJ_P0044546 Cd200 protein_coding nonsense_mediated_decay MGP_AJ_T0044547.1 MGP_AJ_G0022816.1 mouse_genomes_project 16 42213695 42228042 - Cd200 protein_coding processed_transcript MGP_AJ_T0044548.1 MGP_AJ_G0022816.1 mouse_genomes_project 16 42213923 42228060 - Cd200 protein_coding processed_transcript MGP_AJ_T0044549.1 MGP_AJ_G0022816.1 mouse_genomes_project 16 42216041 42228036 - Cd200 protein_coding processed_transcript MGP_AJ_T0044550.1 MGP_AJ_G0022816.1 mouse_genomes_project 16 42218650 42227883 - Cd200 protein_coding retained_intron MGP_AJ_T0044551.1 MGP_AJ_G0022816.1 mouse_genomes_project 16 42219371 42228026 - Cd200 protein_coding processed_transcript MGP_AJ_T0044552.1 MGP_AJ_G0022816.1 mouse_genomes_project 16 42226259 42228037 - Cd200 protein_coding processed_transcript MGP_AJ_T0044711.1 MGP_AJ_G0022864.1 mouse_genomes_project 16 53998700 54021805 - MGP_AJ_P0044711 Tmem30c protein_coding protein_coding MGP_AJ_T0044712.1 MGP_AJ_G0022864.1 mouse_genomes_project 16 53998987 54021791 - MGP_AJ_P0044712 Tmem30c protein_coding protein_coding MGP_AJ_T0044713.1 MGP_AJ_G0022864.1 mouse_genomes_project 16 54001886 54021791 - MGP_AJ_P0044713 Tmem30c protein_coding protein_coding MGP_AJ_T0044300.1 MGP_AJ_G0022760.1 mouse_genomes_project 16 33555896 33568401 + Golgb1 protein_coding processed_transcript MGP_AJ_T0044301.1 MGP_AJ_G0022760.1 mouse_genomes_project 16 33555897 33570202 + MGP_AJ_P0044301 Golgb1 protein_coding protein_coding MGP_AJ_T0044302.1 MGP_AJ_G0022760.1 mouse_genomes_project 16 33555897 33556395 + MGP_AJ_P0044302 Golgb1 protein_coding protein_coding MGP_AJ_T0044303.1 MGP_AJ_G0022760.1 mouse_genomes_project 16 33555924 33613888 + MGP_AJ_P0044303 Golgb1 protein_coding protein_coding MGP_AJ_T0044304.1 MGP_AJ_G0022760.1 mouse_genomes_project 16 33555947 33613890 + MGP_AJ_P0044304 Golgb1 protein_coding unknown_likely_coding MGP_AJ_T0044305.1 MGP_AJ_G0022760.1 mouse_genomes_project 16 33555958 33570204 + MGP_AJ_P0044305 Golgb1 protein_coding protein_coding MGP_AJ_T0044306.1 MGP_AJ_G0022760.1 mouse_genomes_project 16 33605259 33609174 + Golgb1 protein_coding retained_intron MGP_AJ_T0044307.1 MGP_AJ_G0022760.1 mouse_genomes_project 16 33612202 33612876 + Golgb1 protein_coding retained_intron MGP_AJ_T0006861.1 MGP_AJ_G0005653.1 mouse_genomes_project 16 47277923 47310668 + G730013B05Rik lincRNA lincRNA MGP_AJ_T0045356.1 MGP_AJ_G0023057.1 mouse_genomes_project 16 94119994 94201509 + MGP_AJ_P0045356 Bace2 protein_coding protein_coding MGP_AJ_T0042928.1 MGP_AJ_G0022427.1 mouse_genomes_project 16 921439 942629 + MGP_AJ_P0042928 Glis2 protein_coding protein_coding MGP_AJ_T0042929.1 MGP_AJ_G0022427.1 mouse_genomes_project 16 927889 937085 + MGP_AJ_P0042929 Glis2 protein_coding protein_coding MGP_AJ_T0042930.1 MGP_AJ_G0022427.1 mouse_genomes_project 16 935338 942614 + Glis2 protein_coding retained_intron MGP_AJ_T0042931.1 MGP_AJ_G0022427.1 mouse_genomes_project 16 938081 940328 + Glis2 protein_coding retained_intron MGP_AJ_T0042932.1 MGP_AJ_G0022427.1 mouse_genomes_project 16 938299 951594 + Glis2 protein_coding processed_transcript MGP_AJ_T0045082.1 MGP_AJ_G0023009.1 mouse_genomes_project 16 88179234 88201613 + MGP_AJ_P0045082 Ifnar1 protein_coding protein_coding MGP_AJ_T0045083.1 MGP_AJ_G0023009.1 mouse_genomes_project 16 88179245 88201609 + MGP_AJ_P0045083 Ifnar1 protein_coding nonsense_mediated_decay MGP_AJ_T0045084.1 MGP_AJ_G0023009.1 mouse_genomes_project 16 88179260 88201613 + MGP_AJ_P0045084 Ifnar1 protein_coding protein_coding MGP_AJ_T0045085.1 MGP_AJ_G0023009.1 mouse_genomes_project 16 88179273 88185780 + Ifnar1 protein_coding retained_intron MGP_AJ_T0045086.1 MGP_AJ_G0023009.1 mouse_genomes_project 16 88179332 88190170 + MGP_AJ_P0045086 Ifnar1 protein_coding protein_coding MGP_AJ_T0010162.1 MGP_AJ_G0008284.1 mouse_genomes_project 16 88644582 88644660 - Gm27773 miRNA miRNA MGP_AJ_T0013128.1 MGP_AJ_G0011223.1 mouse_genomes_project 16 10418070 10419025 - processed_pseudogene processed_pseudogene MGP_AJ_T0043777.1 MGP_AJ_G0022619.1 mouse_genomes_project 16 17674466 17676388 - MGP_AJ_P0043777 Teddm3 protein_coding protein_coding MGP_AJ_T0044211.1 MGP_AJ_G0022734.1 mouse_genomes_project 16 32217262 32325200 + protein_coding retained_intron MGP_AJ_T0044212.1 MGP_AJ_G0022734.1 mouse_genomes_project 16 32217479 32345136 + MGP_AJ_P0044212 protein_coding protein_coding MGP_AJ_T0044213.1 MGP_AJ_G0022734.1 mouse_genomes_project 16 32217688 32345136 + MGP_AJ_P0044213 protein_coding protein_coding MGP_AJ_T0044214.1 MGP_AJ_G0022734.1 mouse_genomes_project 16 32336785 32337178 + protein_coding retained_intron MGP_AJ_T0044215.1 MGP_AJ_G0022734.1 mouse_genomes_project 16 32337275 32345607 + MGP_AJ_P0044215 protein_coding protein_coding MGP_AJ_T0044216.1 MGP_AJ_G0022734.1 mouse_genomes_project 16 32338125 32338971 + protein_coding retained_intron MGP_AJ_T0044217.1 MGP_AJ_G0022734.1 mouse_genomes_project 16 32342179 32344189 + MGP_AJ_P0044217 protein_coding protein_coding MGP_AJ_T0044218.1 MGP_AJ_G0022734.1 mouse_genomes_project 16 32343345 32344329 + protein_coding retained_intron MGP_AJ_T0044804.1 MGP_AJ_G0022902.1 mouse_genomes_project 16 59502820 59552493 - MGP_AJ_P0044804 Nsun3 protein_coding nonsense_mediated_decay MGP_AJ_T0044805.1 MGP_AJ_G0022902.1 mouse_genomes_project 16 59502820 59552493 - MGP_AJ_P0044805 Nsun3 protein_coding protein_coding MGP_AJ_T0044806.1 MGP_AJ_G0022902.1 mouse_genomes_project 16 59505536 59532839 - Nsun3 protein_coding processed_transcript MGP_AJ_T0044807.1 MGP_AJ_G0022902.1 mouse_genomes_project 16 59536407 59552482 - MGP_AJ_P0044807 Nsun3 protein_coding protein_coding MGP_AJ_T0044808.1 MGP_AJ_G0022902.1 mouse_genomes_project 16 59541881 59552534 - Nsun3 protein_coding processed_transcript MGP_AJ_T0044809.1 MGP_AJ_G0022902.1 mouse_genomes_project 16 59544966 59552429 - Nsun3 protein_coding processed_transcript MGP_AJ_T0003693.1 MGP_AJ_G0003333.1 mouse_genomes_project 16 87673346 87677304 + Gm15965 antisense antisense MGP_AJ_T0099627.1 MGP_AJ_G0037593.1 mouse_genomes_project 16 59357671 59357775 + Gm24164 snRNA snRNA MGP_AJ_T0043810.1 MGP_AJ_G0022629.1 mouse_genomes_project 16 18771417 18796671 - MGP_AJ_P0043810 Tra2b protein_coding protein_coding MGP_AJ_T0043811.1 MGP_AJ_G0022629.1 mouse_genomes_project 16 18774288 18779901 - Tra2b protein_coding retained_intron MGP_AJ_T0043812.1 MGP_AJ_G0022629.1 mouse_genomes_project 16 18774565 18785447 - MGP_AJ_P0043812 Tra2b protein_coding unknown_likely_coding MGP_AJ_T0043813.1 MGP_AJ_G0022629.1 mouse_genomes_project 16 18781768 18790288 - Tra2b protein_coding processed_transcript MGP_AJ_T0043814.1 MGP_AJ_G0022629.1 mouse_genomes_project 16 18788729 18796584 - Tra2b protein_coding retained_intron MGP_AJ_T0042985.1 MGP_AJ_G0022440.1 mouse_genomes_project 16 1300275 1310309 + MGP_AJ_P0042985 4930451G09Rik protein_coding protein_coding MGP_AJ_T0098410.1 MGP_AJ_G0036394.1 mouse_genomes_project 16 32946210 32946304 - pseudogene pseudogene MGP_AJ_T0042946.1 MGP_AJ_G0022430.1 mouse_genomes_project 16 966612 977390 + MGP_AJ_P0042946 Vasn protein_coding protein_coding MGP_AJ_T0042947.1 MGP_AJ_G0022430.1 mouse_genomes_project 16 966639 974168 + Vasn protein_coding processed_transcript MGP_AJ_T0044497.1 MGP_AJ_G0022805.1 mouse_genomes_project 16 41297499 41371772 - MGP_AJ_P0044497 Boc protein_coding protein_coding MGP_AJ_T0044498.1 MGP_AJ_G0022805.1 mouse_genomes_project 16 41297503 41371799 - MGP_AJ_P0044498 Boc protein_coding protein_coding MGP_AJ_T0044499.1 MGP_AJ_G0022805.1 mouse_genomes_project 16 41297506 41333915 - MGP_AJ_P0044499 Boc protein_coding unknown_likely_coding MGP_AJ_T0013168.1 MGP_AJ_G0011263.1 mouse_genomes_project 16 35387750 35388305 - processed_pseudogene processed_pseudogene MGP_AJ_T0045333.1 MGP_AJ_G0023051.1 mouse_genomes_project 16 92940712 92968888 + MGP_AJ_P0045333 Sh3bgr protein_coding protein_coding MGP_AJ_T0045334.1 MGP_AJ_G0023051.1 mouse_genomes_project 16 92940913 92964660 + MGP_AJ_P0045334 Sh3bgr protein_coding protein_coding MGP_AJ_T0045335.1 MGP_AJ_G0023051.1 mouse_genomes_project 16 92940913 92968883 + MGP_AJ_P0045335 Sh3bgr protein_coding protein_coding MGP_AJ_T0045336.1 MGP_AJ_G0023051.1 mouse_genomes_project 16 92940946 92960200 + MGP_AJ_P0045336 Sh3bgr protein_coding protein_coding MGP_AJ_T0045337.1 MGP_AJ_G0023051.1 mouse_genomes_project 16 92940971 92964691 + MGP_AJ_P0045337 Sh3bgr protein_coding protein_coding MGP_AJ_T0045338.1 MGP_AJ_G0023051.1 mouse_genomes_project 16 92946161 92964663 + MGP_AJ_P0045338 Sh3bgr protein_coding protein_coding MGP_AJ_T0045339.1 MGP_AJ_G0023051.1 mouse_genomes_project 16 92960107 92968880 + MGP_AJ_P0045339 Sh3bgr protein_coding protein_coding MGP_AJ_T0010160.1 MGP_AJ_G0008282.1 mouse_genomes_project 16 87643105 87643179 + Gm22933 miRNA miRNA MGP_AJ_T0000019.1 MGP_AJ_G0000013.1 mouse_genomes_project 16 15652497 15652811 - MGP_AJ_P0000019 Iglc4 IG_C_gene IG_C_gene MGP_AJ_T0010105.1 MGP_AJ_G0008227.1 mouse_genomes_project 16 253515 253603 + Gm23493 miRNA miRNA MGP_AJ_T0045168.1 MGP_AJ_G0023020.1 mouse_genomes_project 16 88759676 88788864 + MGP_AJ_P0045168 Slc5a3 protein_coding protein_coding MGP_AJ_T0045169.1 MGP_AJ_G0023020.1 mouse_genomes_project 16 88779421 88785199 + MGP_AJ_P0045169 Slc5a3 protein_coding protein_coding MGP_AJ_T0044244.1 MGP_AJ_G0022742.1 mouse_genomes_project 16 32736662 32765247 - MGP_AJ_P0044244 Fam162a protein_coding protein_coding MGP_AJ_T0000959.1 MGP_AJ_G0000892.1 mouse_genomes_project 16 72792090 72793814 + TEC TEC MGP_AJ_T0043291.1 MGP_AJ_G0022520.1 mouse_genomes_project 16 13081157 13082299 - MGP_AJ_P0043291 Olfr19 protein_coding protein_coding MGP_AJ_T0043292.1 MGP_AJ_G0022520.1 mouse_genomes_project 16 13081616 13084687 - MGP_AJ_P0043292 Olfr19 protein_coding protein_coding MGP_AJ_T0011404.1 MGP_AJ_G0009526.1 mouse_genomes_project 16 4799646 4799935 - Gm25782 misc_RNA misc_RNA MGP_AJ_T0010128.1 MGP_AJ_G0008250.1 mouse_genomes_project 16 19143352 19143459 + Mir6362 miRNA miRNA MGP_AJ_T0044018.1 MGP_AJ_G0022687.1 mouse_genomes_project 16 28507285 28527495 + MGP_AJ_P0044018 Mfi2 protein_coding protein_coding MGP_AJ_T0043886.1 MGP_AJ_G0022652.1 mouse_genomes_project 16 21887528 22025030 + MGP_AJ_P0043886 Tprg protein_coding protein_coding MGP_AJ_T0043887.1 MGP_AJ_G0022652.1 mouse_genomes_project 16 21887532 21919567 + Tprg protein_coding retained_intron MGP_AJ_T0003681.1 MGP_AJ_G0003326.1 mouse_genomes_project 16 42536448 42537068 + Gm15591 antisense antisense MGP_AJ_T0043110.1 MGP_AJ_G0022474.1 mouse_genomes_project 16 7197734 7198454 - MGP_AJ_P0043110 Tnp2 protein_coding protein_coding MGP_AJ_T0044308.1 MGP_AJ_G0022761.1 mouse_genomes_project 16 33615785 33643927 + MGP_AJ_P0044308 Hcls1 protein_coding protein_coding MGP_AJ_T0044309.1 MGP_AJ_G0022761.1 mouse_genomes_project 16 33618089 33642245 + MGP_AJ_P0044309 Hcls1 protein_coding nonsense_mediated_decay MGP_AJ_T0044310.1 MGP_AJ_G0022761.1 mouse_genomes_project 16 33635467 33637348 + Hcls1 protein_coding retained_intron MGP_AJ_T0098612.1 MGP_AJ_G0036596.1 mouse_genomes_project 16 58158333 58158451 - n-R5s37 rRNA rRNA MGP_AJ_T0043599.1 MGP_AJ_G0022580.1 mouse_genomes_project 16 15268822 15272314 + MGP_AJ_P0043599 Ufd1l protein_coding protein_coding MGP_AJ_T0043600.1 MGP_AJ_G0022580.1 mouse_genomes_project 16 15268867 15291267 + MGP_AJ_P0043600 Ufd1l protein_coding nonsense_mediated_decay MGP_AJ_T0043601.1 MGP_AJ_G0022580.1 mouse_genomes_project 16 15268875 15292213 + MGP_AJ_P0043601 Ufd1l protein_coding protein_coding MGP_AJ_T0043602.1 MGP_AJ_G0022580.1 mouse_genomes_project 16 15269337 15272867 + Ufd1l protein_coding processed_transcript MGP_AJ_T0043603.1 MGP_AJ_G0022580.1 mouse_genomes_project 16 15269337 15292218 + MGP_AJ_P0043603 Ufd1l protein_coding protein_coding MGP_AJ_T0043604.1 MGP_AJ_G0022580.1 mouse_genomes_project 16 15269364 15284654 + MGP_AJ_P0043604 Ufd1l protein_coding nonsense_mediated_decay MGP_AJ_T0043605.1 MGP_AJ_G0022580.1 mouse_genomes_project 16 15269399 15281999 + MGP_AJ_P0043605 Ufd1l protein_coding nonsense_mediated_decay MGP_AJ_T0043606.1 MGP_AJ_G0022580.1 mouse_genomes_project 16 15280182 15291211 + Ufd1l protein_coding retained_intron MGP_AJ_T0043607.1 MGP_AJ_G0022580.1 mouse_genomes_project 16 15284017 15285412 + MGP_AJ_P0043607 Ufd1l protein_coding protein_coding MGP_AJ_T0043608.1 MGP_AJ_G0022580.1 mouse_genomes_project 16 15284205 15291361 + Ufd1l protein_coding retained_intron MGP_AJ_T0099626.1 MGP_AJ_G0037592.1 mouse_genomes_project 16 52510060 52510160 - Gm26369 snRNA snRNA MGP_AJ_T0010135.1 MGP_AJ_G0008257.1 mouse_genomes_project 16 29782939 29783024 + Mir1947 miRNA miRNA MGP_AJ_T0013126.1 MGP_AJ_G0011221.1 mouse_genomes_project 16 7912981 7914467 - processed_pseudogene processed_pseudogene MGP_AJ_T0042878.1 MGP_AJ_G0022417.1 mouse_genomes_project 16 230348 249959 + MGP_AJ_P0042878 Cluap1 protein_coding protein_coding MGP_AJ_T0042879.1 MGP_AJ_G0022417.1 mouse_genomes_project 16 230372 267332 + MGP_AJ_P0042879 Cluap1 protein_coding protein_coding MGP_AJ_T0042880.1 MGP_AJ_G0022417.1 mouse_genomes_project 16 230586 235120 + Cluap1 protein_coding retained_intron MGP_AJ_T0042881.1 MGP_AJ_G0022417.1 mouse_genomes_project 16 230623 256173 + MGP_AJ_P0042881 Cluap1 protein_coding nonsense_mediated_decay MGP_AJ_T0042882.1 MGP_AJ_G0022417.1 mouse_genomes_project 16 230653 250015 + MGP_AJ_P0042882 Cluap1 protein_coding protein_coding MGP_AJ_T0044422.1 MGP_AJ_G0022792.1 mouse_genomes_project 16 39659620 40254056 + Zbtb20 protein_coding retained_intron MGP_AJ_T0044423.1 MGP_AJ_G0022792.1 mouse_genomes_project 16 39690971 39857525 + Zbtb20 protein_coding processed_transcript MGP_AJ_T0044424.1 MGP_AJ_G0022792.1 mouse_genomes_project 16 39691121 40361187 + Zbtb20 protein_coding processed_transcript MGP_AJ_T0044425.1 MGP_AJ_G0022792.1 mouse_genomes_project 16 39691224 40369107 + MGP_AJ_P0044425 Zbtb20 protein_coding protein_coding MGP_AJ_T0044426.1 MGP_AJ_G0022792.1 mouse_genomes_project 16 39691231 40253955 + Zbtb20 protein_coding retained_intron MGP_AJ_T0044427.1 MGP_AJ_G0022792.1 mouse_genomes_project 16 40024964 40401049 + MGP_AJ_P0044427 Zbtb20 protein_coding protein_coding MGP_AJ_T0044428.1 MGP_AJ_G0022792.1 mouse_genomes_project 16 40025123 40092538 + Zbtb20 protein_coding retained_intron MGP_AJ_T0044429.1 MGP_AJ_G0022792.1 mouse_genomes_project 16 40153754 40361167 + Zbtb20 protein_coding processed_transcript MGP_AJ_T0044430.1 MGP_AJ_G0022792.1 mouse_genomes_project 16 40154170 40370133 + Zbtb20 protein_coding retained_intron MGP_AJ_T0044431.1 MGP_AJ_G0022792.1 mouse_genomes_project 16 40154585 40400996 + MGP_AJ_P0044431 Zbtb20 protein_coding protein_coding MGP_AJ_T0044432.1 MGP_AJ_G0022792.1 mouse_genomes_project 16 40154916 40401003 + MGP_AJ_P0044432 Zbtb20 protein_coding protein_coding MGP_AJ_T0044433.1 MGP_AJ_G0022792.1 mouse_genomes_project 16 40294844 40368575 + MGP_AJ_P0044433 Zbtb20 protein_coding protein_coding MGP_AJ_T0044434.1 MGP_AJ_G0022792.1 mouse_genomes_project 16 40294852 40363181 + MGP_AJ_P0044434 Zbtb20 protein_coding protein_coding MGP_AJ_T0044435.1 MGP_AJ_G0022792.1 mouse_genomes_project 16 40294872 40401238 + MGP_AJ_P0044435 Zbtb20 protein_coding protein_coding MGP_AJ_T0044436.1 MGP_AJ_G0022792.1 mouse_genomes_project 16 40294927 40368556 + Zbtb20 protein_coding processed_transcript MGP_AJ_T0044437.1 MGP_AJ_G0022792.1 mouse_genomes_project 16 40299414 40361187 + Zbtb20 protein_coding processed_transcript MGP_AJ_T0044438.1 MGP_AJ_G0022792.1 mouse_genomes_project 16 40365891 40415624 + MGP_AJ_P0044438 Zbtb20 protein_coding protein_coding MGP_AJ_T0010144.1 MGP_AJ_G0008266.1 mouse_genomes_project 16 47488443 47488557 + Mir6363 miRNA miRNA MGP_AJ_T0043231.1 MGP_AJ_G0022503.1 mouse_genomes_project 16 10518099 10569081 - MGP_AJ_P0043231 Marf1 protein_coding protein_coding MGP_AJ_T0006869.1 MGP_AJ_G0005657.1 mouse_genomes_project 16 53904367 53911055 + Gm16892 lincRNA lincRNA MGP_AJ_T0045002.1 MGP_AJ_G0022989.1 mouse_genomes_project 16 86177473 86178093 - MGP_AJ_P0045002 Krtap7-1 protein_coding protein_coding MGP_AJ_T0043043.1 MGP_AJ_G0022458.1 mouse_genomes_project 16 4992310 5012137 + MGP_AJ_P0043043 Pmm2 protein_coding protein_coding MGP_AJ_T0043044.1 MGP_AJ_G0022458.1 mouse_genomes_project 16 4992359 5003711 + Pmm2 protein_coding retained_intron MGP_AJ_T0043045.1 MGP_AJ_G0022458.1 mouse_genomes_project 16 4992374 4999638 + Pmm2 protein_coding retained_intron MGP_AJ_T0043046.1 MGP_AJ_G0022458.1 mouse_genomes_project 16 4992678 5006023 + Pmm2 protein_coding processed_transcript MGP_AJ_T0043047.1 MGP_AJ_G0022458.1 mouse_genomes_project 16 5000592 5003306 + Pmm2 protein_coding retained_intron MGP_AJ_T0043048.1 MGP_AJ_G0022458.1 mouse_genomes_project 16 5003187 5011348 + Pmm2 protein_coding retained_intron MGP_AJ_T0043151.1 MGP_AJ_G0022484.1 mouse_genomes_project 16 7608050 7618374 - MGP_AJ_P0043151 Rsl1d1 protein_coding protein_coding MGP_AJ_T0043152.1 MGP_AJ_G0022484.1 mouse_genomes_project 16 7608585 7610076 - Rsl1d1 protein_coding retained_intron MGP_AJ_T0043153.1 MGP_AJ_G0022484.1 mouse_genomes_project 16 7611520 7618307 - Rsl1d1 protein_coding retained_intron MGP_AJ_T0098792.1 MGP_AJ_G0036776.1 mouse_genomes_project 16 29820704 29821103 - Gm23916 ribozyme ribozyme MGP_AJ_T0043649.1 MGP_AJ_G0022599.1 mouse_genomes_project 16 16612955 16704517 + MGP_AJ_P0043649 Yeats2 protein_coding protein_coding MGP_AJ_T0043650.1 MGP_AJ_G0022599.1 mouse_genomes_project 16 16612955 16704517 + MGP_AJ_P0043650 Yeats2 protein_coding protein_coding MGP_AJ_T0044158.1 MGP_AJ_G0022721.1 mouse_genomes_project 16 30206565 30350595 + MGP_AJ_P0044158 Slc12a8 protein_coding protein_coding MGP_AJ_T0044159.1 MGP_AJ_G0022721.1 mouse_genomes_project 16 30284359 30350589 + MGP_AJ_P0044159 Slc12a8 protein_coding protein_coding MGP_AJ_T0044160.1 MGP_AJ_G0022721.1 mouse_genomes_project 16 30304035 30312132 + Slc12a8 protein_coding processed_transcript MGP_AJ_T0044028.1 MGP_AJ_G0022691.1 mouse_genomes_project 16 28589169 28619870 - MGP_AJ_P0044028 Senp5 protein_coding unknown_likely_coding MGP_AJ_T0044029.1 MGP_AJ_G0022691.1 mouse_genomes_project 16 28593020 28618407 - MGP_AJ_P0044029 Senp5 protein_coding nonsense_mediated_decay MGP_AJ_T0044030.1 MGP_AJ_G0022691.1 mouse_genomes_project 16 28605251 28619583 - MGP_AJ_P0044030 Senp5 protein_coding protein_coding MGP_AJ_T0044031.1 MGP_AJ_G0022691.1 mouse_genomes_project 16 28606236 28633263 - Senp5 protein_coding retained_intron MGP_AJ_T0043942.1 MGP_AJ_G0022669.1 mouse_genomes_project 16 26158747 26233579 + MGP_AJ_P0043942 Opa1 protein_coding protein_coding MGP_AJ_T0043943.1 MGP_AJ_G0022669.1 mouse_genomes_project 16 26158791 26193665 + Opa1 protein_coding retained_intron MGP_AJ_T0043944.1 MGP_AJ_G0022669.1 mouse_genomes_project 16 26158793 26227721 + MGP_AJ_P0043944 Opa1 protein_coding protein_coding MGP_AJ_T0043945.1 MGP_AJ_G0022669.1 mouse_genomes_project 16 26158793 26230570 + MGP_AJ_P0043945 Opa1 protein_coding protein_coding MGP_AJ_T0043946.1 MGP_AJ_G0022669.1 mouse_genomes_project 16 26158793 26209278 + MGP_AJ_P0043946 Opa1 protein_coding nonsense_mediated_decay MGP_AJ_T0043947.1 MGP_AJ_G0022669.1 mouse_genomes_project 16 26158805 26230573 + Opa1 protein_coding retained_intron MGP_AJ_T0043948.1 MGP_AJ_G0022669.1 mouse_genomes_project 16 26165147 26189948 + MGP_AJ_P0043948 Opa1 protein_coding protein_coding MGP_AJ_T0043949.1 MGP_AJ_G0022669.1 mouse_genomes_project 16 26195665 26197751 + Opa1 protein_coding retained_intron MGP_AJ_T0043634.1 MGP_AJ_G0022594.1 mouse_genomes_project 16 16135378 16185984 - MGP_AJ_P0043634 Lamp3 protein_coding protein_coding MGP_AJ_T0044784.1 MGP_AJ_G0022896.1 mouse_genomes_project 16 56117037 56118042 - MGP_AJ_P0044784 Olfr206 protein_coding protein_coding MGP_AJ_T0000971.1 MGP_AJ_G0000903.1 mouse_genomes_project 16 74345410 74348521 + TEC TEC MGP_AJ_T0044287.1 MGP_AJ_G0022758.1 mouse_genomes_project 16 33473854 33555760 - Eaf2 protein_coding processed_transcript MGP_AJ_T0044288.1 MGP_AJ_G0022758.1 mouse_genomes_project 16 33473855 33555760 - Eaf2 protein_coding processed_transcript MGP_AJ_T0044289.1 MGP_AJ_G0022758.1 mouse_genomes_project 16 33473856 33489129 - MGP_AJ_P0044289 Eaf2 protein_coding protein_coding MGP_AJ_T0044290.1 MGP_AJ_G0022758.1 mouse_genomes_project 16 33473935 33508209 - Eaf2 protein_coding processed_transcript MGP_AJ_T0044291.1 MGP_AJ_G0022758.1 mouse_genomes_project 16 33473990 33508154 - MGP_AJ_P0044291 Eaf2 protein_coding protein_coding MGP_AJ_T0044292.1 MGP_AJ_G0022758.1 mouse_genomes_project 16 33502557 33555571 - Eaf2 protein_coding retained_intron MGP_AJ_T0098930.1 MGP_AJ_G0036909.1 mouse_genomes_project 16 27575956 27580201 - Gm15742 sense_intronic sense_intronic MGP_AJ_T0043770.1 MGP_AJ_G0022616.1 mouse_genomes_project 16 17194669 17199283 + MGP_AJ_P0043770 Polr2h protein_coding protein_coding MGP_AJ_T0043771.1 MGP_AJ_G0022616.1 mouse_genomes_project 16 17195176 17199023 + Polr2h protein_coding processed_transcript MGP_AJ_T0043815.1 MGP_AJ_G0022630.1 mouse_genomes_project 16 18918484 18972800 - MGP_AJ_P0043815 Etv5 protein_coding protein_coding MGP_AJ_T0043816.1 MGP_AJ_G0022630.1 mouse_genomes_project 16 18918487 18976096 - MGP_AJ_P0043816 Etv5 protein_coding protein_coding MGP_AJ_T0043817.1 MGP_AJ_G0022630.1 mouse_genomes_project 16 18919904 18938169 - MGP_AJ_P0043817 Etv5 protein_coding nonsense_mediated_decay MGP_AJ_T0043818.1 MGP_AJ_G0022630.1 mouse_genomes_project 16 18919926 18975999 - MGP_AJ_P0043818 Etv5 protein_coding unknown_likely_coding MGP_AJ_T0043819.1 MGP_AJ_G0022630.1 mouse_genomes_project 16 18938203 18975993 - Etv5 protein_coding processed_transcript MGP_AJ_T0043820.1 MGP_AJ_G0022630.1 mouse_genomes_project 16 18949262 18975947 - MGP_AJ_P0043820 Etv5 protein_coding protein_coding MGP_AJ_T0044792.1 MGP_AJ_G0022899.1 mouse_genomes_project 16 56289773 56323429 - Crybg3 protein_coding retained_intron MGP_AJ_T0044793.1 MGP_AJ_G0022899.1 mouse_genomes_project 16 56291095 56354639 - MGP_AJ_P0044793 Crybg3 protein_coding protein_coding MGP_AJ_T0044794.1 MGP_AJ_G0022899.1 mouse_genomes_project 16 56324325 56337687 - Crybg3 protein_coding processed_transcript MGP_AJ_T0044795.1 MGP_AJ_G0022899.1 mouse_genomes_project 16 56341878 56352857 - MGP_AJ_P0044795 Crybg3 protein_coding protein_coding MGP_AJ_T0045180.1 MGP_AJ_G0023026.1 mouse_genomes_project 16 89190720 89235092 + MGP_AJ_P0045180 Clic6 protein_coding protein_coding MGP_AJ_T0045181.1 MGP_AJ_G0023026.1 mouse_genomes_project 16 89203921 89247530 + MGP_AJ_P0045181 Clic6 protein_coding protein_coding MGP_AJ_T0044742.1 MGP_AJ_G0022872.1 mouse_genomes_project 16 55380884 55393835 + MGP_AJ_P0044742 Cpox protein_coding protein_coding MGP_AJ_T0045071.1 MGP_AJ_G0023006.1 mouse_genomes_project 16 88061136 88093925 + MGP_AJ_P0045071 Ifnar2 protein_coding protein_coding MGP_AJ_T0045072.1 MGP_AJ_G0023006.1 mouse_genomes_project 16 88061189 88082205 + MGP_AJ_P0045072 Ifnar2 protein_coding protein_coding MGP_AJ_T0045073.1 MGP_AJ_G0023006.1 mouse_genomes_project 16 88061198 88082382 + MGP_AJ_P0045073 Ifnar2 protein_coding protein_coding MGP_AJ_T0045074.1 MGP_AJ_G0023006.1 mouse_genomes_project 16 88076130 88080118 + MGP_AJ_P0045074 Ifnar2 protein_coding protein_coding MGP_AJ_T0006827.1 MGP_AJ_G0005623.1 mouse_genomes_project 16 7239698 7245305 + Gm26822 lincRNA lincRNA MGP_AJ_T0043167.1 MGP_AJ_G0022488.1 mouse_genomes_project 16 8220365 8320335 - MGP_AJ_P0043167 Cpped1 protein_coding protein_coding MGP_AJ_T0043168.1 MGP_AJ_G0022488.1 mouse_genomes_project 16 8220371 8320334 - MGP_AJ_P0043168 Cpped1 protein_coding protein_coding MGP_AJ_T0043169.1 MGP_AJ_G0022488.1 mouse_genomes_project 16 8243106 8320308 - Cpped1 protein_coding retained_intron MGP_AJ_T0043170.1 MGP_AJ_G0022488.1 mouse_genomes_project 16 8244095 8320310 - MGP_AJ_P0043170 Cpped1 protein_coding protein_coding MGP_AJ_T0043171.1 MGP_AJ_G0022488.1 mouse_genomes_project 16 8295397 8320357 - MGP_AJ_P0043171 Cpped1 protein_coding protein_coding MGP_AJ_T0013130.1 MGP_AJ_G0011225.1 mouse_genomes_project 16 10475934 10476538 + processed_pseudogene processed_pseudogene MGP_AJ_T0098611.1 MGP_AJ_G0036595.1 mouse_genomes_project 16 45189709 45189828 - n-R5s36 rRNA rRNA MGP_AJ_T0043160.1 MGP_AJ_G0022487.1 mouse_genomes_project 16 7741646 8168007 + MGP_AJ_P0043160 Snx29 protein_coding protein_coding MGP_AJ_T0043161.1 MGP_AJ_G0022487.1 mouse_genomes_project 16 7741710 7823515 + MGP_AJ_P0043161 Snx29 protein_coding protein_coding MGP_AJ_T0043162.1 MGP_AJ_G0022487.1 mouse_genomes_project 16 7825326 8168007 + MGP_AJ_P0043162 Snx29 protein_coding protein_coding MGP_AJ_T0043163.1 MGP_AJ_G0022487.1 mouse_genomes_project 16 7826335 8080661 + MGP_AJ_P0043163 Snx29 protein_coding protein_coding MGP_AJ_T0043164.1 MGP_AJ_G0022487.1 mouse_genomes_project 16 7840414 8097930 + MGP_AJ_P0043164 Snx29 protein_coding protein_coding MGP_AJ_T0043165.1 MGP_AJ_G0022487.1 mouse_genomes_project 16 7864615 8052211 + Snx29 protein_coding retained_intron MGP_AJ_T0043166.1 MGP_AJ_G0022487.1 mouse_genomes_project 16 7866738 8080602 + Snx29 protein_coding retained_intron MGP_AJ_T0043111.1 MGP_AJ_G0022475.1 mouse_genomes_project 16 7200301 7200711 - MGP_AJ_P0043111 Prm3 protein_coding protein_coding MGP_AJ_T0043797.1 MGP_AJ_G0022624.1 mouse_genomes_project 16 18415521 18455366 + MGP_AJ_P0043797 Map3k13 protein_coding protein_coding MGP_AJ_T0044989.1 MGP_AJ_G0022978.1 mouse_genomes_project 16 85722290 85722881 - MGP_AJ_P0044989 1110025L11Rik protein_coding protein_coding MGP_AJ_T0000967.1 MGP_AJ_G0000899.1 mouse_genomes_project 16 74181077 74181600 + TEC TEC MGP_AJ_T0003687.1 MGP_AJ_G0003330.1 mouse_genomes_project 16 52704836 52706186 - Zbtb11os1 antisense antisense MGP_AJ_T0043005.1 MGP_AJ_G0022444.1 mouse_genomes_project 16 1348313 1384764 - MGP_AJ_P0043005 Glyr1 protein_coding protein_coding MGP_AJ_T0043006.1 MGP_AJ_G0022444.1 mouse_genomes_project 16 1348313 1384764 - MGP_AJ_P0043006 Glyr1 protein_coding protein_coding MGP_AJ_T0100905.1 MGP_AJ_G0038871.1 mouse_genomes_project 16 83542382 83542507 + Gm25715 snoRNA snoRNA MGP_AJ_T0044651.1 MGP_AJ_G0022848.1 mouse_genomes_project 16 52575189 52627995 - MGP_AJ_P0044651 Nxpe3 protein_coding unknown_likely_coding MGP_AJ_T0099620.1 MGP_AJ_G0037586.1 mouse_genomes_project 16 42827717 42827824 - Gm24754 snRNA snRNA MGP_AJ_T0044911.1 MGP_AJ_G0022938.1 mouse_genomes_project 16 81524717 81551729 + MGP_AJ_P0044911 Gabpa protein_coding protein_coding MGP_AJ_T0044912.1 MGP_AJ_G0022938.1 mouse_genomes_project 16 81524916 81554142 + MGP_AJ_P0044912 Gabpa protein_coding protein_coding MGP_AJ_T0044913.1 MGP_AJ_G0022938.1 mouse_genomes_project 16 81542374 81550843 + Gabpa protein_coding processed_transcript MGP_AJ_T0044914.1 MGP_AJ_G0022938.1 mouse_genomes_project 16 81546449 81547988 + Gabpa protein_coding retained_intron MGP_AJ_T0044915.1 MGP_AJ_G0022938.1 mouse_genomes_project 16 81550458 81552879 + Gabpa protein_coding processed_transcript MGP_AJ_T0044255.1 MGP_AJ_G0022749.1 mouse_genomes_project 16 32928857 32936151 + MGP_AJ_P0044255 Gm5416 protein_coding protein_coding MGP_AJ_T0017501.1 MGP_AJ_G0015297.1 mouse_genomes_project 16 56356899 56399189 - Crybg3 processed_transcript processed_transcript MGP_AJ_T0043963.1 MGP_AJ_G0022676.1 mouse_genomes_project 16 27112528 27151841 - Tmem44 protein_coding retained_intron MGP_AJ_T0043964.1 MGP_AJ_G0022676.1 mouse_genomes_project 16 27112528 27152465 - MGP_AJ_P0043964 Tmem44 protein_coding nonsense_mediated_decay MGP_AJ_T0043965.1 MGP_AJ_G0022676.1 mouse_genomes_project 16 27114355 27152473 - MGP_AJ_P0043965 Tmem44 protein_coding protein_coding MGP_AJ_T0043966.1 MGP_AJ_G0022676.1 mouse_genomes_project 16 27114357 27152473 - MGP_AJ_P0043966 Tmem44 protein_coding nonsense_mediated_decay MGP_AJ_T0043967.1 MGP_AJ_G0022676.1 mouse_genomes_project 16 27114634 27142231 - MGP_AJ_P0043967 Tmem44 protein_coding nonsense_mediated_decay MGP_AJ_T0043968.1 MGP_AJ_G0022676.1 mouse_genomes_project 16 27115379 27152394 - MGP_AJ_P0043968 Tmem44 protein_coding unknown_likely_coding MGP_AJ_T0043969.1 MGP_AJ_G0022676.1 mouse_genomes_project 16 27118247 27152434 - Tmem44 protein_coding retained_intron MGP_AJ_T0043970.1 MGP_AJ_G0022676.1 mouse_genomes_project 16 27118628 27152737 - Tmem44 protein_coding retained_intron MGP_AJ_T0043971.1 MGP_AJ_G0022676.1 mouse_genomes_project 16 27145034 27152423 - Tmem44 protein_coding processed_transcript MGP_AJ_T0006837.1 MGP_AJ_G0005632.1 mouse_genomes_project 16 15678735 15703193 - Gm43388 lincRNA lincRNA MGP_AJ_T0044771.1 MGP_AJ_G0022884.1 mouse_genomes_project 16 55846951 55850916 - MGP_AJ_P0044771 Olfr191 protein_coding protein_coding MGP_AJ_T0043079.1 MGP_AJ_G0022466.1 mouse_genomes_project 16 6685931 6718001 - MGP_AJ_P0043079 Emp2 protein_coding protein_coding MGP_AJ_T0044353.1 MGP_AJ_G0022772.1 mouse_genomes_project 16 34597682 34687981 + MGP_AJ_P0044353 Gpr156 protein_coding protein_coding MGP_AJ_T0043041.1 MGP_AJ_G0022456.1 mouse_genomes_project 16 4977724 4978606 - MGP_AJ_P0043041 protein_coding protein_coding MGP_AJ_T0043305.1 MGP_AJ_G0022525.1 mouse_genomes_project 16 13280466 13296129 + MGP_AJ_P0043305 Top3b protein_coding protein_coding MGP_AJ_T0043306.1 MGP_AJ_G0022525.1 mouse_genomes_project 16 13280487 13303265 + MGP_AJ_P0043306 Top3b protein_coding protein_coding MGP_AJ_T0043307.1 MGP_AJ_G0022525.1 mouse_genomes_project 16 13280497 13289612 + MGP_AJ_P0043307 Top3b protein_coding protein_coding MGP_AJ_T0043308.1 MGP_AJ_G0022525.1 mouse_genomes_project 16 13280504 13293813 + MGP_AJ_P0043308 Top3b protein_coding protein_coding MGP_AJ_T0043309.1 MGP_AJ_G0022525.1 mouse_genomes_project 16 13280511 13303270 + MGP_AJ_P0043309 Top3b protein_coding protein_coding MGP_AJ_T0043310.1 MGP_AJ_G0022525.1 mouse_genomes_project 16 13280516 13295746 + Top3b protein_coding retained_intron MGP_AJ_T0043311.1 MGP_AJ_G0022525.1 mouse_genomes_project 16 13280517 13290936 + MGP_AJ_P0043311 Top3b protein_coding protein_coding MGP_AJ_T0043312.1 MGP_AJ_G0022525.1 mouse_genomes_project 16 13280530 13289627 + Top3b protein_coding retained_intron MGP_AJ_T0043313.1 MGP_AJ_G0022525.1 mouse_genomes_project 16 13280537 13289339 + MGP_AJ_P0043313 Top3b protein_coding protein_coding MGP_AJ_T0043314.1 MGP_AJ_G0022525.1 mouse_genomes_project 16 13280547 13303270 + Top3b protein_coding retained_intron MGP_AJ_T0043315.1 MGP_AJ_G0022525.1 mouse_genomes_project 16 13280570 13289274 + MGP_AJ_P0043315 Top3b protein_coding protein_coding MGP_AJ_T0043316.1 MGP_AJ_G0022525.1 mouse_genomes_project 16 13280695 13289754 + Top3b protein_coding retained_intron MGP_AJ_T0043317.1 MGP_AJ_G0022525.1 mouse_genomes_project 16 13293728 13303253 + MGP_AJ_P0043317 Top3b protein_coding protein_coding MGP_AJ_T0043318.1 MGP_AJ_G0022525.1 mouse_genomes_project 16 13294498 13303270 + Top3b protein_coding retained_intron MGP_AJ_T0043319.1 MGP_AJ_G0022525.1 mouse_genomes_project 16 13295805 13296986 + Top3b protein_coding retained_intron MGP_AJ_T0043320.1 MGP_AJ_G0022525.1 mouse_genomes_project 16 13296923 13297990 + Top3b protein_coding retained_intron MGP_AJ_T0043321.1 MGP_AJ_G0022525.1 mouse_genomes_project 16 13297189 13298167 + Top3b protein_coding retained_intron MGP_AJ_T0043322.1 MGP_AJ_G0022525.1 mouse_genomes_project 16 13298118 13303255 + Top3b protein_coding retained_intron MGP_AJ_T0043323.1 MGP_AJ_G0022525.1 mouse_genomes_project 16 13300505 13302780 + MGP_AJ_P0043323 Top3b protein_coding protein_coding MGP_AJ_T0043324.1 MGP_AJ_G0022525.1 mouse_genomes_project 16 13301781 13302699 + Top3b protein_coding retained_intron MGP_AJ_T0044256.1 MGP_AJ_G0022750.1 mouse_genomes_project 16 32955467 32960317 - MGP_AJ_P0044256 BC117090 protein_coding protein_coding MGP_AJ_T0000963.1 MGP_AJ_G0000895.1 mouse_genomes_project 16 74107818 74109092 + TEC TEC MGP_AJ_T0000957.1 MGP_AJ_G0000890.1 mouse_genomes_project 16 54643618 54644028 + TEC TEC MGP_AJ_T0044057.1 MGP_AJ_G0022697.1 mouse_genomes_project 16 28852292 28870007 - MGP_AJ_P0044057 Fbxo45 protein_coding protein_coding MGP_AJ_T0013123.1 MGP_AJ_G0011218.1 mouse_genomes_project 16 7211165 7211511 + processed_pseudogene processed_pseudogene MGP_AJ_T0098608.1 MGP_AJ_G0036592.1 mouse_genomes_project 16 29667058 29667177 + n-R5s33 rRNA rRNA MGP_AJ_T0102109.1 MGP_AJ_G0039872.1 mouse_genomes_project 16 16962502 16964611 + unitary_pseudogene unitary_pseudogene MGP_AJ_T0044777.1 MGP_AJ_G0022889.1 mouse_genomes_project 16 56012998 56014023 - MGP_AJ_P0044777 Olfr198 protein_coding protein_coding MGP_AJ_T0003677.1 MGP_AJ_G0003322.1 mouse_genomes_project 16 34998427 35000832 + Maats1os antisense antisense MGP_AJ_T0044714.1 MGP_AJ_G0022865.1 mouse_genomes_project 16 54031133 54336582 - MGP_AJ_P0044714 Cmss1 protein_coding protein_coding MGP_AJ_T0043010.1 MGP_AJ_G0022448.1 mouse_genomes_project 16 1536109 1546637 - MGP_AJ_P0043010 Nagpa protein_coding protein_coding MGP_AJ_T0043011.1 MGP_AJ_G0022448.1 mouse_genomes_project 16 1536109 1546627 - MGP_AJ_P0043011 Nagpa protein_coding protein_coding MGP_AJ_T0043012.1 MGP_AJ_G0022448.1 mouse_genomes_project 16 1536207 1540390 - Nagpa protein_coding processed_transcript MGP_AJ_T0043013.1 MGP_AJ_G0022448.1 mouse_genomes_project 16 1542437 1546102 - Nagpa protein_coding retained_intron MGP_AJ_T0099618.1 MGP_AJ_G0037584.1 mouse_genomes_project 16 37004332 37004426 + Gm22543 snRNA snRNA MGP_AJ_T0044077.1 MGP_AJ_G0022707.1 mouse_genomes_project 16 29237283 29261055 + MGP_AJ_P0044077 Tfrc protein_coding protein_coding MGP_AJ_T0044078.1 MGP_AJ_G0022707.1 mouse_genomes_project 16 29237346 29251963 + MGP_AJ_P0044078 Tfrc protein_coding protein_coding MGP_AJ_T0044079.1 MGP_AJ_G0022707.1 mouse_genomes_project 16 29237613 29241627 + MGP_AJ_P0044079 Tfrc protein_coding protein_coding MGP_AJ_T0044080.1 MGP_AJ_G0022707.1 mouse_genomes_project 16 29243620 29245545 + Tfrc protein_coding retained_intron MGP_AJ_T0044081.1 MGP_AJ_G0022707.1 mouse_genomes_project 16 29246666 29249269 + Tfrc protein_coding retained_intron MGP_AJ_T0044082.1 MGP_AJ_G0022707.1 mouse_genomes_project 16 29252663 29261051 + Tfrc protein_coding retained_intron MGP_AJ_T0000018.1 MGP_AJ_G0000012.1 mouse_genomes_project 16 15532300 15532752 - MGP_AJ_P0000018 Iglc3 IG_C_gene IG_C_gene MGP_AJ_T0045271.1 MGP_AJ_G0023042.1 mouse_genomes_project 16 91487984 91739070 - MGP_AJ_P0045271 Kcnj6 protein_coding protein_coding MGP_AJ_T0045272.1 MGP_AJ_G0023042.1 mouse_genomes_project 16 91499809 91739070 - MGP_AJ_P0045272 Kcnj6 protein_coding protein_coding MGP_AJ_T0045273.1 MGP_AJ_G0023042.1 mouse_genomes_project 16 91560987 91598630 - MGP_AJ_P0045273 Kcnj6 protein_coding protein_coding MGP_AJ_T0099628.1 MGP_AJ_G0037594.1 mouse_genomes_project 16 60503030 60503128 - Gm22769 snRNA snRNA MGP_AJ_T0044979.1 MGP_AJ_G0022968.1 mouse_genomes_project 16 85543965 85544269 - MGP_AJ_P0044979 Krtap19-4 protein_coding protein_coding MGP_AJ_T0044596.1 MGP_AJ_G0022829.1 mouse_genomes_project 16 45058993 45070579 + MGP_AJ_P0044596 Dppa4 protein_coding protein_coding MGP_AJ_T0044597.1 MGP_AJ_G0022829.1 mouse_genomes_project 16 45058993 45070579 + MGP_AJ_P0044597 Dppa4 protein_coding protein_coding MGP_AJ_T0044882.1 MGP_AJ_G0022929.1 mouse_genomes_project 16 75060712 75077584 - MGP_AJ_P0044882 protein_coding protein_coding MGP_AJ_T0043612.1 MGP_AJ_G0022582.1 mouse_genomes_project 16 15293538 15412742 + MGP_AJ_P0043612 Gm28539 protein_coding nonsense_mediated_decay MGP_AJ_T0044222.1 MGP_AJ_G0022737.1 mouse_genomes_project 16 32519562 32558269 - MGP_AJ_P0044222 Parp14 protein_coding protein_coding MGP_AJ_T0044223.1 MGP_AJ_G0022737.1 mouse_genomes_project 16 32543921 32558114 - Parp14 protein_coding retained_intron MGP_AJ_T0044224.1 MGP_AJ_G0022737.1 mouse_genomes_project 16 32552657 32558114 - Parp14 protein_coding retained_intron MGP_AJ_T0044695.1 MGP_AJ_G0022857.1 mouse_genomes_project 16 53421057 53448173 - MGP_AJ_P0044695 Tfg protein_coding protein_coding MGP_AJ_T0044696.1 MGP_AJ_G0022857.1 mouse_genomes_project 16 53421602 53436418 - MGP_AJ_P0044696 Tfg protein_coding protein_coding MGP_AJ_T0044697.1 MGP_AJ_G0022857.1 mouse_genomes_project 16 53421693 53435187 - MGP_AJ_P0044697 Tfg protein_coding protein_coding MGP_AJ_T0044698.1 MGP_AJ_G0022857.1 mouse_genomes_project 16 53434221 53448034 - MGP_AJ_P0044698 Tfg protein_coding protein_coding MGP_AJ_T0044699.1 MGP_AJ_G0022857.1 mouse_genomes_project 16 53435172 53443699 - MGP_AJ_P0044699 Tfg protein_coding protein_coding MGP_AJ_T0044700.1 MGP_AJ_G0022857.1 mouse_genomes_project 16 53435254 53448083 - MGP_AJ_P0044700 Tfg protein_coding protein_coding MGP_AJ_T0044701.1 MGP_AJ_G0022857.1 mouse_genomes_project 16 53436334 53447905 - MGP_AJ_P0044701 Tfg protein_coding protein_coding MGP_AJ_T0043497.1 MGP_AJ_G0022560.1 mouse_genomes_project 16 14362208 14365217 - MGP_AJ_P0043497 Slc25a1 protein_coding protein_coding MGP_AJ_T0043498.1 MGP_AJ_G0022560.1 mouse_genomes_project 16 14362679 14364341 - Slc25a1 protein_coding retained_intron MGP_AJ_T0043499.1 MGP_AJ_G0022560.1 mouse_genomes_project 16 14362713 14364414 - MGP_AJ_P0043499 Slc25a1 protein_coding protein_coding MGP_AJ_T0043500.1 MGP_AJ_G0022560.1 mouse_genomes_project 16 14363263 14364885 - Slc25a1 protein_coding retained_intron MGP_AJ_T0043501.1 MGP_AJ_G0022560.1 mouse_genomes_project 16 14364147 14365127 - Slc25a1 protein_coding retained_intron MGP_AJ_T0043502.1 MGP_AJ_G0022560.1 mouse_genomes_project 16 14364414 14365207 - Slc25a1 protein_coding retained_intron MGP_AJ_T0102367.1 MGP_AJ_G0040109.1 mouse_genomes_project 16 90343890 90400974 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0013175.1 MGP_AJ_G0011270.1 mouse_genomes_project 16 41628367 41628659 - processed_pseudogene processed_pseudogene MGP_AJ_T0000047.1 MGP_AJ_G0000038.1 mouse_genomes_project 16 15657696 15657734 - MGP_AJ_P0000047 Iglj2 IG_J_gene IG_J_gene MGP_AJ_T0013190.1 MGP_AJ_G0011285.1 mouse_genomes_project 16 61668780 61670689 + processed_pseudogene processed_pseudogene MGP_AJ_T0017495.1 MGP_AJ_G0015294.1 mouse_genomes_project 16 39534196 39659327 - 4932412D23Rik processed_transcript processed_transcript MGP_AJ_T0017496.1 MGP_AJ_G0015294.1 mouse_genomes_project 16 39599173 39659502 - 4932412D23Rik processed_transcript processed_transcript MGP_AJ_T0017497.1 MGP_AJ_G0015294.1 mouse_genomes_project 16 39599534 39659480 - 4932412D23Rik processed_transcript processed_transcript MGP_AJ_T0017498.1 MGP_AJ_G0015294.1 mouse_genomes_project 16 39599686 39659486 - 4932412D23Rik processed_transcript processed_transcript MGP_AJ_T0044366.1 MGP_AJ_G0022777.1 mouse_genomes_project 16 35043751 35059028 + MGP_AJ_P0044366 protein_coding protein_coding MGP_AJ_T0043199.1 MGP_AJ_G0022497.1 mouse_genomes_project 16 10188665 10223547 + MGP_AJ_P0043199 Rrn3 protein_coding protein_coding MGP_AJ_T0044459.1 MGP_AJ_G0022798.1 mouse_genomes_project 16 40778837 40811848 - MGP_AJ_P0044459 Gramd1c protein_coding protein_coding MGP_AJ_T0044460.1 MGP_AJ_G0022798.1 mouse_genomes_project 16 40778842 40826937 - MGP_AJ_P0044460 Gramd1c protein_coding protein_coding MGP_AJ_T0044461.1 MGP_AJ_G0022798.1 mouse_genomes_project 16 40778842 40815245 - MGP_AJ_P0044461 Gramd1c protein_coding protein_coding MGP_AJ_T0044462.1 MGP_AJ_G0022798.1 mouse_genomes_project 16 40785643 40839627 - MGP_AJ_P0044462 Gramd1c protein_coding unknown_likely_coding MGP_AJ_T0043242.1 MGP_AJ_G0022506.1 mouse_genomes_project 16 10710318 10728071 - Fopnl protein_coding processed_transcript MGP_AJ_T0043243.1 MGP_AJ_G0022506.1 mouse_genomes_project 16 10711006 10728060 - MGP_AJ_P0043243 Fopnl protein_coding protein_coding MGP_AJ_T0044154.1 MGP_AJ_G0022718.1 mouse_genomes_project 16 29868982 29927212 + MGP_AJ_P0044154 Osbpl11 protein_coding protein_coding MGP_AJ_T0013162.1 MGP_AJ_G0011257.1 mouse_genomes_project 16 32899921 32916788 - processed_pseudogene processed_pseudogene MGP_AJ_T0013117.1 MGP_AJ_G0011212.1 mouse_genomes_project 16 343010 343088 - processed_pseudogene processed_pseudogene MGP_AJ_T0043923.1 MGP_AJ_G0022666.1 mouse_genomes_project 16 25804445 25825266 + MGP_AJ_P0043923 Hrasls protein_coding protein_coding MGP_AJ_T0043924.1 MGP_AJ_G0022666.1 mouse_genomes_project 16 25804858 25823117 + MGP_AJ_P0043924 Hrasls protein_coding protein_coding MGP_AJ_T0043925.1 MGP_AJ_G0022666.1 mouse_genomes_project 16 25804880 25822963 + Hrasls protein_coding processed_transcript MGP_AJ_T0043926.1 MGP_AJ_G0022666.1 mouse_genomes_project 16 25804920 25815076 + MGP_AJ_P0043926 Hrasls protein_coding nonsense_mediated_decay MGP_AJ_T0013160.1 MGP_AJ_G0011255.1 mouse_genomes_project 16 29359491 29360431 + processed_pseudogene processed_pseudogene MGP_AJ_T0044766.1 MGP_AJ_G0022882.1 mouse_genomes_project 16 55763585 55764590 - MGP_AJ_P0044766 Olfr186 protein_coding protein_coding MGP_AJ_T0044767.1 MGP_AJ_G0022882.1 mouse_genomes_project 16 55764182 55767692 - MGP_AJ_P0044767 Olfr186 protein_coding protein_coding MGP_AJ_T0010157.1 MGP_AJ_G0008279.1 mouse_genomes_project 16 74345343 74345414 + Mir125b-2 miRNA miRNA MGP_AJ_T0044379.1 MGP_AJ_G0022783.1 mouse_genomes_project 16 35216968 35254382 - MGP_AJ_P0044379 Poglut1 protein_coding protein_coding MGP_AJ_T0044380.1 MGP_AJ_G0022783.1 mouse_genomes_project 16 35216971 35254346 - Poglut1 protein_coding retained_intron MGP_AJ_T0044381.1 MGP_AJ_G0022783.1 mouse_genomes_project 16 35221304 35236601 - Poglut1 protein_coding retained_intron MGP_AJ_T0044382.1 MGP_AJ_G0022783.1 mouse_genomes_project 16 35238205 35242074 - Poglut1 protein_coding retained_intron MGP_AJ_T0044383.1 MGP_AJ_G0022783.1 mouse_genomes_project 16 35252143 35254346 - Poglut1 protein_coding retained_intron MGP_AJ_T0099638.1 MGP_AJ_G0037604.1 mouse_genomes_project 16 88743818 88743916 + Gm23210 snRNA snRNA MGP_AJ_T0003649.1 MGP_AJ_G0003300.1 mouse_genomes_project 16 8102198 8105887 - Gm4279 antisense antisense MGP_AJ_T0044083.1 MGP_AJ_G0022708.1 mouse_genomes_project 16 29272936 29298345 + Tnk2 protein_coding processed_transcript MGP_AJ_T0044084.1 MGP_AJ_G0022708.1 mouse_genomes_project 16 29273353 29293951 + Tnk2 protein_coding processed_transcript MGP_AJ_T0044085.1 MGP_AJ_G0022708.1 mouse_genomes_project 16 29273705 29313466 + MGP_AJ_P0044085 Tnk2 protein_coding protein_coding MGP_AJ_T0044086.1 MGP_AJ_G0022708.1 mouse_genomes_project 16 29273705 29313466 + MGP_AJ_P0044086 Tnk2 protein_coding protein_coding MGP_AJ_T0044087.1 MGP_AJ_G0022708.1 mouse_genomes_project 16 29273735 29313466 + MGP_AJ_P0044087 Tnk2 protein_coding protein_coding MGP_AJ_T0044088.1 MGP_AJ_G0022708.1 mouse_genomes_project 16 29273888 29313465 + MGP_AJ_P0044088 Tnk2 protein_coding protein_coding MGP_AJ_T0044089.1 MGP_AJ_G0022708.1 mouse_genomes_project 16 29274021 29298358 + Tnk2 protein_coding processed_transcript MGP_AJ_T0044090.1 MGP_AJ_G0022708.1 mouse_genomes_project 16 29285718 29298337 + Tnk2 protein_coding processed_transcript MGP_AJ_T0044091.1 MGP_AJ_G0022708.1 mouse_genomes_project 16 29289004 29298329 + Tnk2 protein_coding processed_transcript MGP_AJ_T0044092.1 MGP_AJ_G0022708.1 mouse_genomes_project 16 29298305 29301778 + Tnk2 protein_coding processed_transcript MGP_AJ_T0044093.1 MGP_AJ_G0022708.1 mouse_genomes_project 16 29303297 29309442 + MGP_AJ_P0044093 Tnk2 protein_coding protein_coding MGP_AJ_T0044094.1 MGP_AJ_G0022708.1 mouse_genomes_project 16 29303299 29313466 + MGP_AJ_P0044094 Tnk2 protein_coding protein_coding MGP_AJ_T0044095.1 MGP_AJ_G0022708.1 mouse_genomes_project 16 29303321 29309656 + MGP_AJ_P0044095 Tnk2 protein_coding protein_coding MGP_AJ_T0044096.1 MGP_AJ_G0022708.1 mouse_genomes_project 16 29303335 29310109 + MGP_AJ_P0044096 Tnk2 protein_coding protein_coding MGP_AJ_T0044097.1 MGP_AJ_G0022708.1 mouse_genomes_project 16 29303338 29309040 + Tnk2 protein_coding retained_intron MGP_AJ_T0044098.1 MGP_AJ_G0022708.1 mouse_genomes_project 16 29303342 29309858 + MGP_AJ_P0044098 Tnk2 protein_coding protein_coding MGP_AJ_T0043686.1 MGP_AJ_G0022606.1 mouse_genomes_project 16 17010931 17020409 + MGP_AJ_P0043686 Ap2m1 protein_coding protein_coding MGP_AJ_T0043687.1 MGP_AJ_G0022606.1 mouse_genomes_project 16 17010933 17021262 + MGP_AJ_P0043687 Ap2m1 protein_coding protein_coding MGP_AJ_T0043688.1 MGP_AJ_G0022606.1 mouse_genomes_project 16 17011002 17013264 + Ap2m1 protein_coding retained_intron MGP_AJ_T0043689.1 MGP_AJ_G0022606.1 mouse_genomes_project 16 17015401 17018531 + Ap2m1 protein_coding processed_transcript MGP_AJ_T0043690.1 MGP_AJ_G0022606.1 mouse_genomes_project 16 17016047 17018294 + Ap2m1 protein_coding retained_intron MGP_AJ_T0043691.1 MGP_AJ_G0022606.1 mouse_genomes_project 16 17017050 17018169 + Ap2m1 protein_coding retained_intron MGP_AJ_T0043692.1 MGP_AJ_G0022606.1 mouse_genomes_project 16 17017270 17017972 + Ap2m1 protein_coding retained_intron MGP_AJ_T0043693.1 MGP_AJ_G0022606.1 mouse_genomes_project 16 17018201 17019973 + Ap2m1 protein_coding retained_intron MGP_AJ_T0043694.1 MGP_AJ_G0022606.1 mouse_genomes_project 16 17018333 17018968 + Ap2m1 protein_coding retained_intron MGP_AJ_T0043695.1 MGP_AJ_G0022606.1 mouse_genomes_project 16 17018776 17019940 + Ap2m1 protein_coding retained_intron MGP_AJ_T0043402.1 MGP_AJ_G0022541.1 mouse_genomes_project 16 13878915 13914397 + MGP_AJ_P0043402 Crkl protein_coding protein_coding MGP_AJ_T0100873.1 MGP_AJ_G0038839.1 mouse_genomes_project 16 28376423 28376566 - Gm24879 snoRNA snoRNA MGP_AJ_T0044846.1 MGP_AJ_G0022918.1 mouse_genomes_project 16 69366430 69751940 + MGP_AJ_P0044846 Robo1 protein_coding protein_coding MGP_AJ_T0043878.1 MGP_AJ_G0022647.1 mouse_genomes_project 16 20190561 20194891 + MGP_AJ_P0043878 Rtp4 protein_coding protein_coding MGP_AJ_T0043520.1 MGP_AJ_G0022566.1 mouse_genomes_project 16 14683630 14692410 - MGP_AJ_P0043520 Ranbp1 protein_coding protein_coding MGP_AJ_T0043521.1 MGP_AJ_G0022566.1 mouse_genomes_project 16 14688816 14692494 - Ranbp1 protein_coding retained_intron MGP_AJ_T0043522.1 MGP_AJ_G0022566.1 mouse_genomes_project 16 14689052 14692282 - Ranbp1 protein_coding processed_transcript MGP_AJ_T0003678.1 MGP_AJ_G0003323.1 mouse_genomes_project 16 35273449 35277833 - Gm17103 antisense antisense MGP_AJ_T0100871.1 MGP_AJ_G0038837.1 mouse_genomes_project 16 21481907 21482041 + Gm22672 snoRNA snoRNA MGP_AJ_T0003690.1 MGP_AJ_G0003332.1 mouse_genomes_project 16 63613117 63621720 + 4933411O13Rik antisense antisense MGP_AJ_T0003691.1 MGP_AJ_G0003332.1 mouse_genomes_project 16 63613123 63631368 + 4933411O13Rik antisense antisense MGP_AJ_T0003692.1 MGP_AJ_G0003332.1 mouse_genomes_project 16 63613125 63614589 + 4933411O13Rik antisense antisense MGP_AJ_T0044250.1 MGP_AJ_G0022745.1 mouse_genomes_project 16 32855104 32860455 + MGP_AJ_P0044250 Stfa2l1 protein_coding protein_coding MGP_AJ_T0099595.1 MGP_AJ_G0037561.1 mouse_genomes_project 16 13911224 13911291 - Gm22770 snRNA snRNA MGP_AJ_T0044354.1 MGP_AJ_G0022773.1 mouse_genomes_project 16 34772560 34940629 + MGP_AJ_P0044354 Gsk3b protein_coding protein_coding MGP_AJ_T0044355.1 MGP_AJ_G0022773.1 mouse_genomes_project 16 34773847 34935334 + MGP_AJ_P0044355 Gsk3b protein_coding protein_coding MGP_AJ_T0044356.1 MGP_AJ_G0022773.1 mouse_genomes_project 16 34827174 34881586 + Gsk3b protein_coding processed_transcript MGP_AJ_T0044357.1 MGP_AJ_G0022773.1 mouse_genomes_project 16 34828136 34900148 + Gsk3b protein_coding retained_intron MGP_AJ_T0100908.1 MGP_AJ_G0038874.1 mouse_genomes_project 16 84419710 84419798 - Gm23994 snoRNA snoRNA MGP_AJ_T0045004.1 MGP_AJ_G0022991.1 mouse_genomes_project 16 86461186 86648137 - MGP_AJ_P0045004 Tiam1 protein_coding protein_coding MGP_AJ_T0045005.1 MGP_AJ_G0022991.1 mouse_genomes_project 16 86461186 86634589 - MGP_AJ_P0045005 Tiam1 protein_coding protein_coding MGP_AJ_T0045006.1 MGP_AJ_G0022991.1 mouse_genomes_project 16 86461186 86648137 - MGP_AJ_P0045006 Tiam1 protein_coding protein_coding MGP_AJ_T0045007.1 MGP_AJ_G0022991.1 mouse_genomes_project 16 86461186 86531725 - MGP_AJ_P0045007 Tiam1 protein_coding protein_coding MGP_AJ_T0045008.1 MGP_AJ_G0022991.1 mouse_genomes_project 16 86461191 86472130 - MGP_AJ_P0045008 Tiam1 protein_coding protein_coding MGP_AJ_T0045009.1 MGP_AJ_G0022991.1 mouse_genomes_project 16 86461818 86492449 - MGP_AJ_P0045009 Tiam1 protein_coding protein_coding MGP_AJ_T0045010.1 MGP_AJ_G0022991.1 mouse_genomes_project 16 86461946 86511963 - Tiam1 protein_coding retained_intron MGP_AJ_T0045011.1 MGP_AJ_G0022991.1 mouse_genomes_project 16 86462510 86469371 - Tiam1 protein_coding processed_transcript MGP_AJ_T0045012.1 MGP_AJ_G0022991.1 mouse_genomes_project 16 86465773 86474079 - MGP_AJ_P0045012 Tiam1 protein_coding protein_coding MGP_AJ_T0045013.1 MGP_AJ_G0022991.1 mouse_genomes_project 16 86571062 86648137 - Tiam1 protein_coding processed_transcript MGP_AJ_T0045014.1 MGP_AJ_G0022991.1 mouse_genomes_project 16 86571103 86634499 - Tiam1 protein_coding processed_transcript MGP_AJ_T0045015.1 MGP_AJ_G0022991.1 mouse_genomes_project 16 86571173 86592636 - Tiam1 protein_coding processed_transcript MGP_AJ_T0045016.1 MGP_AJ_G0022991.1 mouse_genomes_project 16 86581837 86629874 - Tiam1 protein_coding retained_intron MGP_AJ_T0045017.1 MGP_AJ_G0022991.1 mouse_genomes_project 16 86582192 86647337 - Tiam1 protein_coding processed_transcript MGP_AJ_T0045018.1 MGP_AJ_G0022991.1 mouse_genomes_project 16 86629731 86653510 - Tiam1 protein_coding processed_transcript MGP_AJ_T0043255.1 MGP_AJ_G0022508.1 mouse_genomes_project 16 10912060 10919228 + MGP_AJ_P0043255 Gm1758 protein_coding protein_coding MGP_AJ_T0043434.1 MGP_AJ_G0022547.1 mouse_genomes_project 16 14002478 14006194 - Slc7a4 protein_coding retained_intron MGP_AJ_T0043435.1 MGP_AJ_G0022547.1 mouse_genomes_project 16 14002799 14005456 - MGP_AJ_P0043435 Slc7a4 protein_coding protein_coding MGP_AJ_T0043436.1 MGP_AJ_G0022547.1 mouse_genomes_project 16 14004925 14006154 - MGP_AJ_P0043436 Slc7a4 protein_coding protein_coding MGP_AJ_T0043437.1 MGP_AJ_G0022547.1 mouse_genomes_project 16 14005035 14005743 - MGP_AJ_P0043437 Slc7a4 protein_coding protein_coding MGP_AJ_T0043438.1 MGP_AJ_G0022547.1 mouse_genomes_project 16 14005211 14006194 - MGP_AJ_P0043438 Slc7a4 protein_coding protein_coding MGP_AJ_T0010115.1 MGP_AJ_G0008237.1 mouse_genomes_project 16 10569432 10569499 + Mir484 miRNA miRNA MGP_AJ_T0013144.1 MGP_AJ_G0011239.1 mouse_genomes_project 16 16199412 16200202 + processed_pseudogene processed_pseudogene MGP_AJ_T0043593.1 MGP_AJ_G0022577.1 mouse_genomes_project 16 15073129 15081258 - MGP_AJ_P0043593 Sept5 protein_coding protein_coding MGP_AJ_T0043594.1 MGP_AJ_G0022577.1 mouse_genomes_project 16 15074058 15077487 - MGP_AJ_P0043594 Sept5 protein_coding unknown_likely_coding MGP_AJ_T0043626.1 MGP_AJ_G0022587.1 mouse_genomes_project 16 15861727 15862669 - MGP_AJ_P0043626 Olfr165 protein_coding protein_coding MGP_AJ_T0044783.1 MGP_AJ_G0022895.1 mouse_genomes_project 16 56107877 56109012 - MGP_AJ_P0044783 protein_coding protein_coding MGP_AJ_T0043635.1 MGP_AJ_G0022595.1 mouse_genomes_project 16 16234355 16246494 + MGP_AJ_P0043635 B3gnt5 protein_coding protein_coding MGP_AJ_T0043636.1 MGP_AJ_G0022595.1 mouse_genomes_project 16 16234381 16247014 + MGP_AJ_P0043636 B3gnt5 protein_coding protein_coding MGP_AJ_T0043637.1 MGP_AJ_G0022595.1 mouse_genomes_project 16 16234381 16246724 + MGP_AJ_P0043637 B3gnt5 protein_coding protein_coding MGP_AJ_T0043638.1 MGP_AJ_G0022595.1 mouse_genomes_project 16 16234546 16239883 + B3gnt5 protein_coding processed_transcript MGP_AJ_T0043639.1 MGP_AJ_G0022595.1 mouse_genomes_project 16 16234733 16243099 + B3gnt5 protein_coding retained_intron MGP_AJ_T0043640.1 MGP_AJ_G0022595.1 mouse_genomes_project 16 16234734 16238539 + B3gnt5 protein_coding retained_intron MGP_AJ_T0043641.1 MGP_AJ_G0022595.1 mouse_genomes_project 16 16235201 16244885 + MGP_AJ_P0043641 B3gnt5 protein_coding protein_coding MGP_AJ_T0003660.1 MGP_AJ_G0003310.1 mouse_genomes_project 16 22557865 22561733 + Gm4524 antisense antisense MGP_AJ_T0013181.1 MGP_AJ_G0011276.1 mouse_genomes_project 16 46064813 46066023 - processed_pseudogene processed_pseudogene MGP_AJ_T0043717.1 MGP_AJ_G0022610.1 mouse_genomes_project 16 17086070 17093447 + MGP_AJ_P0043717 Ece2 protein_coding protein_coding MGP_AJ_T0043718.1 MGP_AJ_G0022610.1 mouse_genomes_project 16 17086078 17093309 + MGP_AJ_P0043718 Ece2 protein_coding protein_coding MGP_AJ_T0043719.1 MGP_AJ_G0022610.1 mouse_genomes_project 16 17086078 17120298 + MGP_AJ_P0043719 Ece2 protein_coding protein_coding MGP_AJ_T0043720.1 MGP_AJ_G0022610.1 mouse_genomes_project 16 17086087 17120303 + MGP_AJ_P0043720 Ece2 protein_coding protein_coding MGP_AJ_T0043721.1 MGP_AJ_G0022610.1 mouse_genomes_project 16 17086271 17120298 + MGP_AJ_P0043721 Ece2 protein_coding protein_coding MGP_AJ_T0043723.1 MGP_AJ_G0022610.1 mouse_genomes_project 16 17104229 17120298 + MGP_AJ_P0043723 Ece2 protein_coding protein_coding MGP_AJ_T0043724.1 MGP_AJ_G0022610.1 mouse_genomes_project 16 17104246 17117418 + Ece2 protein_coding retained_intron MGP_AJ_T0043725.1 MGP_AJ_G0022610.1 mouse_genomes_project 16 17104246 17120859 + MGP_AJ_P0043725 Ece2 protein_coding protein_coding MGP_AJ_T0043726.1 MGP_AJ_G0022610.1 mouse_genomes_project 16 17104252 17120298 + MGP_AJ_P0043726 Ece2 protein_coding protein_coding MGP_AJ_T0043727.1 MGP_AJ_G0022610.1 mouse_genomes_project 16 17105545 17112341 + Ece2 protein_coding retained_intron MGP_AJ_T0043728.1 MGP_AJ_G0022610.1 mouse_genomes_project 16 17107264 17120868 + MGP_AJ_P0043728 Ece2 protein_coding protein_coding MGP_AJ_T0045026.1 MGP_AJ_G0022996.1 mouse_genomes_project 16 87424787 87433904 + Mrap protein_coding processed_transcript MGP_AJ_T0045027.1 MGP_AJ_G0022996.1 mouse_genomes_project 16 87424787 87437150 + Mrap protein_coding processed_transcript MGP_AJ_T0045028.1 MGP_AJ_G0022996.1 mouse_genomes_project 16 87424787 87436661 + Mrap protein_coding processed_transcript MGP_AJ_T0045029.1 MGP_AJ_G0022996.1 mouse_genomes_project 16 87424787 87437150 + MGP_AJ_P0045029 Mrap protein_coding protein_coding MGP_AJ_T0042855.1 MGP_AJ_G0022411.1 mouse_genomes_project 16 160940 161879 + MGP_AJ_P0042855 Olfr15 protein_coding protein_coding MGP_AJ_T0013200.1 MGP_AJ_G0011295.1 mouse_genomes_project 16 87604217 87604769 + processed_pseudogene processed_pseudogene MGP_AJ_T0044004.1 MGP_AJ_G0022686.1 mouse_genomes_project 16 28293757 28501826 + MGP_AJ_P0044004 Dlg1 protein_coding protein_coding MGP_AJ_T0044005.1 MGP_AJ_G0022686.1 mouse_genomes_project 16 28294223 28500322 + MGP_AJ_P0044005 Dlg1 protein_coding protein_coding MGP_AJ_T0044006.1 MGP_AJ_G0022686.1 mouse_genomes_project 16 28294249 28501832 + MGP_AJ_P0044006 Dlg1 protein_coding protein_coding MGP_AJ_T0044007.1 MGP_AJ_G0022686.1 mouse_genomes_project 16 28294269 28501825 + MGP_AJ_P0044007 Dlg1 protein_coding nonsense_mediated_decay MGP_AJ_T0044008.1 MGP_AJ_G0022686.1 mouse_genomes_project 16 28294353 28501822 + MGP_AJ_P0044008 Dlg1 protein_coding protein_coding MGP_AJ_T0044009.1 MGP_AJ_G0022686.1 mouse_genomes_project 16 28294464 28501160 + MGP_AJ_P0044009 Dlg1 protein_coding protein_coding MGP_AJ_T0044010.1 MGP_AJ_G0022686.1 mouse_genomes_project 16 28314004 28404885 + Dlg1 protein_coding retained_intron MGP_AJ_T0044011.1 MGP_AJ_G0022686.1 mouse_genomes_project 16 28383985 28500737 + MGP_AJ_P0044011 Dlg1 protein_coding protein_coding MGP_AJ_T0044012.1 MGP_AJ_G0022686.1 mouse_genomes_project 16 28422860 28466667 + MGP_AJ_P0044012 Dlg1 protein_coding protein_coding MGP_AJ_T0044013.1 MGP_AJ_G0022686.1 mouse_genomes_project 16 28453169 28460340 + Dlg1 protein_coding retained_intron MGP_AJ_T0044014.1 MGP_AJ_G0022686.1 mouse_genomes_project 16 28460118 28486419 + MGP_AJ_P0044014 Dlg1 protein_coding nonsense_mediated_decay MGP_AJ_T0044015.1 MGP_AJ_G0022686.1 mouse_genomes_project 16 28471170 28486374 + Dlg1 protein_coding retained_intron MGP_AJ_T0044016.1 MGP_AJ_G0022686.1 mouse_genomes_project 16 28479065 28491701 + Dlg1 protein_coding retained_intron MGP_AJ_T0044017.1 MGP_AJ_G0022686.1 mouse_genomes_project 16 28495973 28500324 + Dlg1 protein_coding retained_intron MGP_AJ_T0043240.1 MGP_AJ_G0022505.1 mouse_genomes_project 16 10604146 10702251 - MGP_AJ_P0043240 Myh11 protein_coding unknown_likely_coding MGP_AJ_T0043241.1 MGP_AJ_G0022505.1 mouse_genomes_project 16 10604147 10702296 - MGP_AJ_P0043241 Myh11 protein_coding protein_coding MGP_AJ_T0043177.1 MGP_AJ_G0022491.1 mouse_genomes_project 16 9496437 9533805 + MGP_AJ_P0043177 Ercc4 protein_coding protein_coding MGP_AJ_T0043178.1 MGP_AJ_G0022491.1 mouse_genomes_project 16 9496670 9514154 + Ercc4 protein_coding retained_intron MGP_AJ_T0043179.1 MGP_AJ_G0022491.1 mouse_genomes_project 16 9496688 9517935 + MGP_AJ_P0043179 Ercc4 protein_coding nonsense_mediated_decay MGP_AJ_T0043180.1 MGP_AJ_G0022491.1 mouse_genomes_project 16 9502127 9535688 + MGP_AJ_P0043180 Ercc4 protein_coding nonsense_mediated_decay MGP_AJ_T0043181.1 MGP_AJ_G0022491.1 mouse_genomes_project 16 9522693 9529727 + Ercc4 protein_coding processed_transcript MGP_AJ_T0013188.1 MGP_AJ_G0011283.1 mouse_genomes_project 16 57887827 57888086 + processed_pseudogene processed_pseudogene MGP_AJ_T0043827.1 MGP_AJ_G0022634.1 mouse_genomes_project 16 19397572 19412196 + MGP_AJ_P0043827 Dnajb11 protein_coding protein_coding MGP_AJ_T0043828.1 MGP_AJ_G0022634.1 mouse_genomes_project 16 19397572 19412119 + MGP_AJ_P0043828 Dnajb11 protein_coding protein_coding MGP_AJ_T0043829.1 MGP_AJ_G0022634.1 mouse_genomes_project 16 19397572 19419365 + MGP_AJ_P0043829 Dnajb11 protein_coding protein_coding MGP_AJ_T0043830.1 MGP_AJ_G0022634.1 mouse_genomes_project 16 19397633 19411835 + Dnajb11 protein_coding processed_transcript MGP_AJ_T0043831.1 MGP_AJ_G0022634.1 mouse_genomes_project 16 19409157 19412037 + Dnajb11 protein_coding processed_transcript MGP_AJ_T0013146.1 MGP_AJ_G0011241.1 mouse_genomes_project 16 17139489 17139981 + processed_pseudogene processed_pseudogene MGP_AJ_T0099637.1 MGP_AJ_G0037603.1 mouse_genomes_project 16 88620449 88620542 - Gm25245 snRNA snRNA MGP_AJ_T0099639.1 MGP_AJ_G0037605.1 mouse_genomes_project 16 91167308 91167468 + Gm23692 snRNA snRNA MGP_AJ_T0044203.1 MGP_AJ_G0022730.1 mouse_genomes_project 16 31697384 31784471 + MGP_AJ_P0044203 Hacd2 protein_coding protein_coding MGP_AJ_T0010120.1 MGP_AJ_G0008242.1 mouse_genomes_project 16 14728616 14728704 - Gm24572 miRNA miRNA MGP_AJ_T0013178.1 MGP_AJ_G0011273.1 mouse_genomes_project 16 42337767 42339123 - processed_pseudogene processed_pseudogene MGP_AJ_T0045355.1 MGP_AJ_G0023056.1 mouse_genomes_project 16 93347908 93929974 - MGP_AJ_P0045355 Dscam protein_coding protein_coding MGP_AJ_T0044829.1 MGP_AJ_G0022913.1 mouse_genomes_project 16 62271230 62295398 - MGP_AJ_P0044829 Chmp2b protein_coding protein_coding MGP_AJ_T0099596.1 MGP_AJ_G0037562.1 mouse_genomes_project 16 14802122 14802270 + Gm26170 snRNA snRNA MGP_AJ_T0010119.1 MGP_AJ_G0008241.1 mouse_genomes_project 16 14728305 14728384 - Mir1306 miRNA miRNA MGP_AJ_T0006890.1 MGP_AJ_G0005671.1 mouse_genomes_project 16 92564709 92628195 - 1600002D24Rik lincRNA lincRNA MGP_AJ_T0006891.1 MGP_AJ_G0005671.1 mouse_genomes_project 16 92575472 92652089 - 1600002D24Rik lincRNA lincRNA MGP_AJ_T0044481.1 MGP_AJ_G0022803.1 mouse_genomes_project 16 41156342 41198116 + MGP_AJ_P0044481 Spice1 protein_coding protein_coding MGP_AJ_T0044482.1 MGP_AJ_G0022803.1 mouse_genomes_project 16 41156635 41180206 + Spice1 protein_coding processed_transcript MGP_AJ_T0044483.1 MGP_AJ_G0022803.1 mouse_genomes_project 16 41157267 41177188 + Spice1 protein_coding processed_transcript MGP_AJ_T0044484.1 MGP_AJ_G0022803.1 mouse_genomes_project 16 41177090 41179844 + Spice1 protein_coding retained_intron MGP_AJ_T0044485.1 MGP_AJ_G0022803.1 mouse_genomes_project 16 41177160 41180211 + Spice1 protein_coding retained_intron MGP_AJ_T0044486.1 MGP_AJ_G0022803.1 mouse_genomes_project 16 41179461 41195302 + Spice1 protein_coding retained_intron MGP_AJ_T0044487.1 MGP_AJ_G0022803.1 mouse_genomes_project 16 41179903 41183075 + Spice1 protein_coding processed_transcript MGP_AJ_T0044488.1 MGP_AJ_G0022803.1 mouse_genomes_project 16 41194979 41196728 + Spice1 protein_coding retained_intron MGP_AJ_T0003644.1 MGP_AJ_G0003296.1 mouse_genomes_project 16 360384 365073 - Gm15879 antisense antisense MGP_AJ_T0003645.1 MGP_AJ_G0003296.1 mouse_genomes_project 16 361924 365401 - Gm15879 antisense antisense MGP_AJ_T0043342.1 MGP_AJ_G0022529.1 mouse_genomes_project 16 13496162 13524051 - MGP_AJ_P0043342 Ppil2 protein_coding protein_coding MGP_AJ_T0043343.1 MGP_AJ_G0022529.1 mouse_genomes_project 16 13496162 13524056 - MGP_AJ_P0043343 Ppil2 protein_coding protein_coding MGP_AJ_T0043344.1 MGP_AJ_G0022529.1 mouse_genomes_project 16 13496923 13524041 - MGP_AJ_P0043344 Ppil2 protein_coding protein_coding MGP_AJ_T0043345.1 MGP_AJ_G0022529.1 mouse_genomes_project 16 13498213 13499067 - Ppil2 protein_coding retained_intron MGP_AJ_T0043346.1 MGP_AJ_G0022529.1 mouse_genomes_project 16 13499709 13501125 - Ppil2 protein_coding retained_intron MGP_AJ_T0043347.1 MGP_AJ_G0022529.1 mouse_genomes_project 16 13502454 13513235 - Ppil2 protein_coding retained_intron MGP_AJ_T0043348.1 MGP_AJ_G0022529.1 mouse_genomes_project 16 13504528 13506752 - Ppil2 protein_coding retained_intron MGP_AJ_T0043349.1 MGP_AJ_G0022529.1 mouse_genomes_project 16 13505368 13524014 - MGP_AJ_P0043349 Ppil2 protein_coding protein_coding MGP_AJ_T0043350.1 MGP_AJ_G0022529.1 mouse_genomes_project 16 13506311 13524035 - Ppil2 protein_coding processed_transcript MGP_AJ_T0043351.1 MGP_AJ_G0022529.1 mouse_genomes_project 16 13506616 13524012 - Ppil2 protein_coding retained_intron MGP_AJ_T0043352.1 MGP_AJ_G0022529.1 mouse_genomes_project 16 13519989 13524035 - Ppil2 protein_coding processed_transcript MGP_AJ_T0043353.1 MGP_AJ_G0022529.1 mouse_genomes_project 16 13521652 13524031 - Ppil2 protein_coding retained_intron MGP_AJ_T0048930.1 MGP_AJ_G0024098.1 mouse_genomes_project 18 4791404 4794248 + MGP_AJ_P0048930 Wac protein_coding protein_coding MGP_AJ_T0048931.1 MGP_AJ_G0024098.1 mouse_genomes_project 18 4791625 4844511 + MGP_AJ_P0048931 Wac protein_coding protein_coding MGP_AJ_T0048932.1 MGP_AJ_G0024098.1 mouse_genomes_project 18 4791800 4794350 + Wac protein_coding retained_intron MGP_AJ_T0048933.1 MGP_AJ_G0024098.1 mouse_genomes_project 18 4792089 4838619 + MGP_AJ_P0048933 Wac protein_coding protein_coding MGP_AJ_T0048934.1 MGP_AJ_G0024098.1 mouse_genomes_project 18 4792140 4851541 + MGP_AJ_P0048934 Wac protein_coding protein_coding MGP_AJ_T0048935.1 MGP_AJ_G0024098.1 mouse_genomes_project 18 4792275 4838812 + MGP_AJ_P0048935 Wac protein_coding protein_coding MGP_AJ_T0048936.1 MGP_AJ_G0024098.1 mouse_genomes_project 18 4792296 4828039 + MGP_AJ_P0048936 Wac protein_coding protein_coding MGP_AJ_T0048937.1 MGP_AJ_G0024098.1 mouse_genomes_project 18 4794271 4844018 + MGP_AJ_P0048937 Wac protein_coding protein_coding MGP_AJ_T0048938.1 MGP_AJ_G0024098.1 mouse_genomes_project 18 4828021 4838819 + MGP_AJ_P0048938 Wac protein_coding protein_coding MGP_AJ_T0048939.1 MGP_AJ_G0024098.1 mouse_genomes_project 18 4833139 4838915 + Wac protein_coding retained_intron MGP_AJ_T0048940.1 MGP_AJ_G0024098.1 mouse_genomes_project 18 4833157 4841031 + MGP_AJ_P0048940 Wac protein_coding protein_coding MGP_AJ_T0048941.1 MGP_AJ_G0024098.1 mouse_genomes_project 18 4840166 4897047 + MGP_AJ_P0048941 Wac protein_coding protein_coding MGP_AJ_T0050142.1 MGP_AJ_G0024548.1 mouse_genomes_project 18 75279315 75377176 + MGP_AJ_P0050142 Epg5 protein_coding protein_coding MGP_AJ_T0100962.1 MGP_AJ_G0038928.1 mouse_genomes_project 18 52225962 52226055 - Gm24183 snoRNA snoRNA MGP_AJ_T0010273.1 MGP_AJ_G0008395.1 mouse_genomes_project 18 79379592 79379663 - Mir5127 miRNA miRNA MGP_AJ_T0010232.1 MGP_AJ_G0008354.1 mouse_genomes_project 18 6707850 6707944 - Gm23637 miRNA miRNA MGP_AJ_T0048927.1 MGP_AJ_G0024096.1 mouse_genomes_project 18 4002392 4220483 - MGP_AJ_P0048927 Armc4 protein_coding protein_coding MGP_AJ_T0048928.1 MGP_AJ_G0024096.1 mouse_genomes_project 18 4042281 4220514 - MGP_AJ_P0048928 Armc4 protein_coding unknown_likely_coding MGP_AJ_T0049385.1 MGP_AJ_G0024270.1 mouse_genomes_project 18 34167448 34357515 + MGP_AJ_P0049385 protein_coding protein_coding MGP_AJ_T0049744.1 MGP_AJ_G0024429.1 mouse_genomes_project 18 57760437 57788644 + MGP_AJ_P0049744 Dctn4 protein_coding protein_coding MGP_AJ_T0049745.1 MGP_AJ_G0024429.1 mouse_genomes_project 18 57760447 57788647 + MGP_AJ_P0049745 Dctn4 protein_coding unknown_likely_coding MGP_AJ_T0049647.1 MGP_AJ_G0024386.1 mouse_genomes_project 18 47139832 47255781 + MGP_AJ_P0049647 Tnfaip8 protein_coding protein_coding MGP_AJ_T0049648.1 MGP_AJ_G0024386.1 mouse_genomes_project 18 47139896 47214206 + Tnfaip8 protein_coding processed_transcript MGP_AJ_T0049649.1 MGP_AJ_G0024386.1 mouse_genomes_project 18 47139934 47258009 + MGP_AJ_P0049649 Tnfaip8 protein_coding protein_coding MGP_AJ_T0049650.1 MGP_AJ_G0024386.1 mouse_genomes_project 18 47139940 47271792 + Tnfaip8 protein_coding processed_transcript MGP_AJ_T0049651.1 MGP_AJ_G0024386.1 mouse_genomes_project 18 47181857 47255574 + MGP_AJ_P0049651 Tnfaip8 protein_coding protein_coding MGP_AJ_T0049652.1 MGP_AJ_G0024386.1 mouse_genomes_project 18 47193379 47255631 + MGP_AJ_P0049652 Tnfaip8 protein_coding protein_coding MGP_AJ_T0049653.1 MGP_AJ_G0024386.1 mouse_genomes_project 18 47193389 47209362 + Tnfaip8 protein_coding processed_transcript MGP_AJ_T0049654.1 MGP_AJ_G0024386.1 mouse_genomes_project 18 47193390 47255466 + MGP_AJ_P0049654 Tnfaip8 protein_coding protein_coding MGP_AJ_T0049655.1 MGP_AJ_G0024386.1 mouse_genomes_project 18 47209674 47210043 + MGP_AJ_P0049655 Tnfaip8 protein_coding protein_coding MGP_AJ_T0049656.1 MGP_AJ_G0024386.1 mouse_genomes_project 18 47214595 47216322 + Tnfaip8 protein_coding retained_intron MGP_AJ_T0049657.1 MGP_AJ_G0024386.1 mouse_genomes_project 18 47214603 47255137 + MGP_AJ_P0049657 Tnfaip8 protein_coding protein_coding MGP_AJ_T0049658.1 MGP_AJ_G0024386.1 mouse_genomes_project 18 47214606 47255250 + MGP_AJ_P0049658 Tnfaip8 protein_coding protein_coding MGP_AJ_T0049659.1 MGP_AJ_G0024386.1 mouse_genomes_project 18 47216188 47256562 + MGP_AJ_P0049659 Tnfaip8 protein_coding protein_coding MGP_AJ_T0049788.1 MGP_AJ_G0024439.1 mouse_genomes_project 18 58241222 58260433 - MGP_AJ_P0049788 Slc6a7 protein_coding protein_coding MGP_AJ_T0049057.1 MGP_AJ_G0024145.1 mouse_genomes_project 18 17788709 17797784 + MGP_AJ_P0049057 Ttr protein_coding protein_coding MGP_AJ_T0050214.1 MGP_AJ_G0024570.1 mouse_genomes_project 18 80303656 80399774 + MGP_AJ_P0050214 Zfp516 protein_coding protein_coding MGP_AJ_T0050215.1 MGP_AJ_G0024570.1 mouse_genomes_project 18 80307392 80399774 + MGP_AJ_P0050215 Zfp516 protein_coding protein_coding MGP_AJ_T0003805.1 MGP_AJ_G0003414.1 mouse_genomes_project 18 20887645 20889504 - Gm15972 antisense antisense MGP_AJ_T0049848.1 MGP_AJ_G0024465.1 mouse_genomes_project 18 60288424 60674151 - MGP_AJ_P0049848 Piezo2 protein_coding protein_coding MGP_AJ_T0049849.1 MGP_AJ_G0024465.1 mouse_genomes_project 18 60288427 60312655 - MGP_AJ_P0049849 Piezo2 protein_coding nonsense_mediated_decay MGP_AJ_T0049850.1 MGP_AJ_G0024465.1 mouse_genomes_project 18 60289710 60527336 - MGP_AJ_P0049850 Piezo2 protein_coding unknown_likely_coding MGP_AJ_T0049851.1 MGP_AJ_G0024465.1 mouse_genomes_project 18 60301355 60310326 - Piezo2 protein_coding retained_intron MGP_AJ_T0049852.1 MGP_AJ_G0024465.1 mouse_genomes_project 18 60301801 60315339 - Piezo2 protein_coding retained_intron MGP_AJ_T0049853.1 MGP_AJ_G0024465.1 mouse_genomes_project 18 60339621 60673425 - MGP_AJ_P0049853 Piezo2 protein_coding protein_coding MGP_AJ_T0049854.1 MGP_AJ_G0024465.1 mouse_genomes_project 18 60359612 60427114 - MGP_AJ_P0049854 Piezo2 protein_coding protein_coding MGP_AJ_T0049855.1 MGP_AJ_G0024465.1 mouse_genomes_project 18 60389832 60463508 - MGP_AJ_P0049855 Piezo2 protein_coding protein_coding MGP_AJ_T0049856.1 MGP_AJ_G0024465.1 mouse_genomes_project 18 60389882 60674151 - MGP_AJ_P0049856 Piezo2 protein_coding protein_coding MGP_AJ_T0049857.1 MGP_AJ_G0024465.1 mouse_genomes_project 18 60403906 60674137 - Piezo2 protein_coding retained_intron MGP_AJ_T0010275.1 MGP_AJ_G0008397.1 mouse_genomes_project 18 86285553 86285634 + Mir6359 miRNA miRNA MGP_AJ_T0049765.1 MGP_AJ_G0024434.1 mouse_genomes_project 18 58008138 58012264 + MGP_AJ_P0049765 Rps14 protein_coding protein_coding MGP_AJ_T0049766.1 MGP_AJ_G0024434.1 mouse_genomes_project 18 58008294 58011149 + Rps14 protein_coding retained_intron MGP_AJ_T0049767.1 MGP_AJ_G0024434.1 mouse_genomes_project 18 58008309 58012259 + MGP_AJ_P0049767 Rps14 protein_coding protein_coding MGP_AJ_T0049768.1 MGP_AJ_G0024434.1 mouse_genomes_project 18 58008857 58011590 + MGP_AJ_P0049768 Rps14 protein_coding protein_coding MGP_AJ_T0049769.1 MGP_AJ_G0024434.1 mouse_genomes_project 18 58009443 58012175 + MGP_AJ_P0049769 Rps14 protein_coding protein_coding MGP_AJ_T0049770.1 MGP_AJ_G0024434.1 mouse_genomes_project 18 58009966 58012263 + MGP_AJ_P0049770 Rps14 protein_coding protein_coding MGP_AJ_T0050183.1 MGP_AJ_G0024563.1 mouse_genomes_project 18 77769609 77831622 - MGP_AJ_P0050183 Ctdp1 protein_coding protein_coding MGP_AJ_T0050184.1 MGP_AJ_G0024563.1 mouse_genomes_project 18 77769615 77802768 - MGP_AJ_P0050184 Ctdp1 protein_coding protein_coding MGP_AJ_T0050185.1 MGP_AJ_G0024563.1 mouse_genomes_project 18 77770386 77802697 - Ctdp1 protein_coding processed_transcript MGP_AJ_T0013326.1 MGP_AJ_G0011421.1 mouse_genomes_project 18 22534748 22535280 + processed_pseudogene processed_pseudogene MGP_AJ_T0017598.1 MGP_AJ_G0015332.1 mouse_genomes_project 18 2374139 2476819 - Gm10125 processed_transcript antisense MGP_AJ_T0017599.1 MGP_AJ_G0015332.1 mouse_genomes_project 18 2401048 2403769 - Gm10125 processed_transcript retained_intron MGP_AJ_T0017600.1 MGP_AJ_G0015332.1 mouse_genomes_project 18 2407952 2476819 - Gm10125 processed_transcript processed_transcript MGP_AJ_T0017601.1 MGP_AJ_G0015332.1 mouse_genomes_project 18 2408024 2476617 - Gm10125 processed_transcript antisense MGP_AJ_T0017602.1 MGP_AJ_G0015332.1 mouse_genomes_project 18 2450147 2477931 - Gm10125 processed_transcript antisense MGP_AJ_T0017603.1 MGP_AJ_G0015332.1 mouse_genomes_project 18 2450147 2476808 - Gm10125 processed_transcript antisense MGP_AJ_T0010258.1 MGP_AJ_G0008380.1 mouse_genomes_project 18 58202690 58202758 + Mir6982 miRNA miRNA MGP_AJ_T0013363.1 MGP_AJ_G0011458.1 mouse_genomes_project 18 82049249 82051207 - processed_pseudogene processed_pseudogene MGP_AJ_T0049455.1 MGP_AJ_G0024320.1 mouse_genomes_project 18 34988837 35011794 + MGP_AJ_P0049455 Pcdhgc5 protein_coding protein_coding MGP_AJ_T0049456.1 MGP_AJ_G0024320.1 mouse_genomes_project 18 34988876 35009970 + MGP_AJ_P0049456 Pcdhgc5 protein_coding protein_coding MGP_AJ_T0049457.1 MGP_AJ_G0024320.1 mouse_genomes_project 18 34988890 35010119 + MGP_AJ_P0049457 Pcdhgc5 protein_coding protein_coding MGP_AJ_T0049458.1 MGP_AJ_G0024320.1 mouse_genomes_project 18 34988978 35010083 + Pcdhgc5 protein_coding retained_intron MGP_AJ_T0049158.1 MGP_AJ_G0024188.1 mouse_genomes_project 18 29086949 29165403 - MGP_AJ_P0049158 Myo7b protein_coding protein_coding MGP_AJ_T0017628.1 MGP_AJ_G0015341.1 mouse_genomes_project 18 54687748 54716767 - 1700066O22Rik processed_transcript processed_transcript MGP_AJ_T0017629.1 MGP_AJ_G0015341.1 mouse_genomes_project 18 54689299 54716743 - 1700066O22Rik processed_transcript processed_transcript MGP_AJ_T0017631.1 MGP_AJ_G0015341.1 mouse_genomes_project 18 54699015 54716754 - 1700066O22Rik processed_transcript processed_transcript MGP_AJ_T0017632.1 MGP_AJ_G0015341.1 mouse_genomes_project 18 54699026 54716731 - 1700066O22Rik processed_transcript processed_transcript MGP_AJ_T0017633.1 MGP_AJ_G0015341.1 mouse_genomes_project 18 54713447 54716738 - 1700066O22Rik processed_transcript processed_transcript MGP_AJ_T0049357.1 MGP_AJ_G0024256.1 mouse_genomes_project 18 33937715 33940251 - Dnd1 protein_coding retained_intron MGP_AJ_T0049358.1 MGP_AJ_G0024256.1 mouse_genomes_project 18 33937717 33940235 - MGP_AJ_P0049358 Dnd1 protein_coding protein_coding MGP_AJ_T0049359.1 MGP_AJ_G0024256.1 mouse_genomes_project 18 33937719 33940235 - Dnd1 protein_coding retained_intron MGP_AJ_T0098828.1 MGP_AJ_G0036812.1 mouse_genomes_project 18 72138854 72138994 - Gm23119 scaRNA scaRNA MGP_AJ_T0003836.1 MGP_AJ_G0003437.1 mouse_genomes_project 18 67353714 67356404 + 4930448D08Rik antisense antisense MGP_AJ_T0049683.1 MGP_AJ_G0024399.1 mouse_genomes_project 18 50314507 50358773 + MGP_AJ_P0049683 Snx2 protein_coding protein_coding MGP_AJ_T0050038.1 MGP_AJ_G0024515.1 mouse_genomes_project 18 71000998 71057242 - MGP_AJ_P0050038 Smad4 protein_coding protein_coding MGP_AJ_T0050039.1 MGP_AJ_G0024515.1 mouse_genomes_project 18 71001992 71040298 - MGP_AJ_P0050039 Smad4 protein_coding protein_coding MGP_AJ_T0050040.1 MGP_AJ_G0024515.1 mouse_genomes_project 18 71002149 71004557 - Smad4 protein_coding processed_transcript MGP_AJ_T0050041.1 MGP_AJ_G0024515.1 mouse_genomes_project 18 71002203 71011818 - Smad4 protein_coding processed_transcript MGP_AJ_T0050042.1 MGP_AJ_G0024515.1 mouse_genomes_project 18 71002214 71024750 - Smad4 protein_coding processed_transcript MGP_AJ_T0050043.1 MGP_AJ_G0024515.1 mouse_genomes_project 18 71020768 71037185 - Smad4 protein_coding processed_transcript MGP_AJ_T0017612.1 MGP_AJ_G0015335.1 mouse_genomes_project 18 34914908 34924378 - Gm26672 processed_transcript antisense MGP_AJ_T0017613.1 MGP_AJ_G0015335.1 mouse_genomes_project 18 34920518 34936354 - Gm26672 processed_transcript antisense MGP_AJ_T0017614.1 MGP_AJ_G0015335.1 mouse_genomes_project 18 34920671 34937055 - Gm26672 processed_transcript antisense MGP_AJ_T0017615.1 MGP_AJ_G0015335.1 mouse_genomes_project 18 34923240 34924772 - Gm26672 processed_transcript retained_intron MGP_AJ_T0049420.1 MGP_AJ_G0024298.1 mouse_genomes_project 18 34694979 34697766 + MGP_AJ_P0049420 Pcdhb22 protein_coding protein_coding MGP_AJ_T0049921.1 MGP_AJ_G0024486.1 mouse_genomes_project 18 64397252 64544745 + MGP_AJ_P0049921 Gnal protein_coding protein_coding MGP_AJ_T0049922.1 MGP_AJ_G0024486.1 mouse_genomes_project 18 64448494 64544745 + MGP_AJ_P0049922 Gnal protein_coding protein_coding MGP_AJ_T0010253.1 MGP_AJ_G0008375.1 mouse_genomes_project 18 54873296 54873392 + Gm44491 miRNA miRNA MGP_AJ_T0049419.1 MGP_AJ_G0024297.1 mouse_genomes_project 18 34690119 34694946 + MGP_AJ_P0049419 Pcdhb21 protein_coding protein_coding MGP_AJ_T0049008.1 MGP_AJ_G0024124.1 mouse_genomes_project 18 9746927 9760705 + MGP_AJ_P0049008 Cabyr protein_coding protein_coding MGP_AJ_T0049009.1 MGP_AJ_G0024124.1 mouse_genomes_project 18 9746950 9760699 + MGP_AJ_P0049009 Cabyr protein_coding nonsense_mediated_decay MGP_AJ_T0049010.1 MGP_AJ_G0024124.1 mouse_genomes_project 18 9746952 9760699 + MGP_AJ_P0049010 Cabyr protein_coding protein_coding MGP_AJ_T0049011.1 MGP_AJ_G0024124.1 mouse_genomes_project 18 9746958 9760701 + MGP_AJ_P0049011 Cabyr protein_coding protein_coding MGP_AJ_T0049012.1 MGP_AJ_G0024124.1 mouse_genomes_project 18 9746958 9760701 + MGP_AJ_P0049012 Cabyr protein_coding protein_coding MGP_AJ_T0049013.1 MGP_AJ_G0024124.1 mouse_genomes_project 18 9746958 9760701 + MGP_AJ_P0049013 Cabyr protein_coding protein_coding MGP_AJ_T0049832.1 MGP_AJ_G0024460.1 mouse_genomes_project 18 59881091 60014040 - MGP_AJ_P0049832 Spink13 protein_coding protein_coding MGP_AJ_T0049731.1 MGP_AJ_G0024422.1 mouse_genomes_project 18 56253591 56268291 + MGP_AJ_P0049731 A730017C20Rik protein_coding nonsense_mediated_decay MGP_AJ_T0049732.1 MGP_AJ_G0024422.1 mouse_genomes_project 18 56253625 56268291 + MGP_AJ_P0049732 A730017C20Rik protein_coding protein_coding MGP_AJ_T0049733.1 MGP_AJ_G0024422.1 mouse_genomes_project 18 56253805 56268291 + MGP_AJ_P0049733 A730017C20Rik protein_coding protein_coding MGP_AJ_T0049734.1 MGP_AJ_G0024422.1 mouse_genomes_project 18 56253809 56266950 + MGP_AJ_P0049734 A730017C20Rik protein_coding protein_coding MGP_AJ_T0049735.1 MGP_AJ_G0024422.1 mouse_genomes_project 18 56253837 56267153 + MGP_AJ_P0049735 A730017C20Rik protein_coding protein_coding MGP_AJ_T0049736.1 MGP_AJ_G0024422.1 mouse_genomes_project 18 56253853 56265993 + A730017C20Rik protein_coding retained_intron MGP_AJ_T0049737.1 MGP_AJ_G0024422.1 mouse_genomes_project 18 56253854 56267260 + MGP_AJ_P0049737 A730017C20Rik protein_coding protein_coding MGP_AJ_T0049151.1 MGP_AJ_G0024183.1 mouse_genomes_project 18 28929001 29036085 + MGP_AJ_P0049151 Wdr33 protein_coding protein_coding MGP_AJ_T0049152.1 MGP_AJ_G0024183.1 mouse_genomes_project 18 28929001 28968352 + MGP_AJ_P0049152 Wdr33 protein_coding protein_coding MGP_AJ_T0013332.1 MGP_AJ_G0011427.1 mouse_genomes_project 18 33853130 33854113 + processed_pseudogene processed_pseudogene MGP_AJ_T0049175.1 MGP_AJ_G0024198.1 mouse_genomes_project 18 30313173 30327904 - MGP_AJ_P0049175 Stard4 protein_coding protein_coding MGP_AJ_T0049176.1 MGP_AJ_G0024198.1 mouse_genomes_project 18 30317219 30327808 - MGP_AJ_P0049176 Stard4 protein_coding protein_coding MGP_AJ_T0049177.1 MGP_AJ_G0024198.1 mouse_genomes_project 18 30317413 30327814 - MGP_AJ_P0049177 Stard4 protein_coding protein_coding MGP_AJ_T0049178.1 MGP_AJ_G0024198.1 mouse_genomes_project 18 30318711 30327863 - Stard4 protein_coding retained_intron MGP_AJ_T0100967.1 MGP_AJ_G0038933.1 mouse_genomes_project 18 64795465 64795599 + Gm24900 snoRNA snoRNA MGP_AJ_T0048921.1 MGP_AJ_G0024094.1 mouse_genomes_project 18 3675770 3700843 + MGP_AJ_P0048921 Rab18 protein_coding protein_coding MGP_AJ_T0049377.1 MGP_AJ_G0024264.1 mouse_genomes_project 18 34128831 35010119 + MGP_AJ_P0049377 Gm42416 protein_coding protein_coding MGP_AJ_T0049312.1 MGP_AJ_G0024241.1 mouse_genomes_project 18 33455526 33475951 + MGP_AJ_P0049312 Pura protein_coding protein_coding MGP_AJ_T0003799.1 MGP_AJ_G0003411.1 mouse_genomes_project 18 13791248 13792194 + Gm15485 antisense antisense MGP_AJ_T0048896.1 MGP_AJ_G0024090.1 mouse_genomes_project 18 2894395 2982964 - MGP_AJ_P0048896 Arhgap12 protein_coding protein_coding MGP_AJ_T0048897.1 MGP_AJ_G0024090.1 mouse_genomes_project 18 2894753 3011349 - MGP_AJ_P0048897 Arhgap12 protein_coding protein_coding MGP_AJ_T0048898.1 MGP_AJ_G0024090.1 mouse_genomes_project 18 2895165 3011402 - MGP_AJ_P0048898 Arhgap12 protein_coding protein_coding MGP_AJ_T0048899.1 MGP_AJ_G0024090.1 mouse_genomes_project 18 2895185 3011540 - MGP_AJ_P0048899 Arhgap12 protein_coding protein_coding MGP_AJ_T0048900.1 MGP_AJ_G0024090.1 mouse_genomes_project 18 2896400 3011334 - MGP_AJ_P0048900 Arhgap12 protein_coding protein_coding MGP_AJ_T0048901.1 MGP_AJ_G0024090.1 mouse_genomes_project 18 2896524 3011330 - MGP_AJ_P0048901 Arhgap12 protein_coding protein_coding MGP_AJ_T0048902.1 MGP_AJ_G0024090.1 mouse_genomes_project 18 2903504 2905126 - Arhgap12 protein_coding retained_intron MGP_AJ_T0048903.1 MGP_AJ_G0024090.1 mouse_genomes_project 18 2909821 2962891 - Arhgap12 protein_coding processed_transcript MGP_AJ_T0048904.1 MGP_AJ_G0024090.1 mouse_genomes_project 18 2916829 2982581 - MGP_AJ_P0048904 Arhgap12 protein_coding protein_coding MGP_AJ_T0048905.1 MGP_AJ_G0024090.1 mouse_genomes_project 18 2925109 3011412 - Arhgap12 protein_coding processed_transcript MGP_AJ_T0048906.1 MGP_AJ_G0024090.1 mouse_genomes_project 18 2929397 2939999 - Arhgap12 protein_coding processed_transcript MGP_AJ_T0048907.1 MGP_AJ_G0024090.1 mouse_genomes_project 18 2929501 3011397 - MGP_AJ_P0048907 Arhgap12 protein_coding protein_coding MGP_AJ_T0048908.1 MGP_AJ_G0024090.1 mouse_genomes_project 18 2931909 3011383 - Arhgap12 protein_coding processed_transcript MGP_AJ_T0048909.1 MGP_AJ_G0024090.1 mouse_genomes_project 18 2933280 3011377 - Arhgap12 protein_coding processed_transcript MGP_AJ_T0048910.1 MGP_AJ_G0024090.1 mouse_genomes_project 18 2938712 2941156 - Arhgap12 protein_coding retained_intron MGP_AJ_T0099696.1 MGP_AJ_G0037662.1 mouse_genomes_project 18 48393502 48393609 - Gm25739 snRNA snRNA MGP_AJ_T0049147.1 MGP_AJ_G0024180.1 mouse_genomes_project 18 28758913 28844202 + MGP_AJ_P0049147 Sap130 protein_coding protein_coding MGP_AJ_T0049148.1 MGP_AJ_G0024180.1 mouse_genomes_project 18 28758925 28844202 + MGP_AJ_P0049148 Sap130 protein_coding protein_coding MGP_AJ_T0049805.1 MGP_AJ_G0024447.1 mouse_genomes_project 18 58745443 58793445 - MGP_AJ_P0049805 Arhgef37 protein_coding protein_coding MGP_AJ_T0049070.1 MGP_AJ_G0024154.1 mouse_genomes_project 18 18937447 19299600 - MGP_AJ_P0049070 Ccdc178 protein_coding protein_coding MGP_AJ_T0049071.1 MGP_AJ_G0024154.1 mouse_genomes_project 18 18937848 19294720 - MGP_AJ_P0049071 Ccdc178 protein_coding protein_coding MGP_AJ_T0049720.1 MGP_AJ_G0024414.1 mouse_genomes_project 18 54528678 54574707 + MGP_AJ_P0049720 Prrc1 protein_coding protein_coding MGP_AJ_T0049667.1 MGP_AJ_G0024391.1 mouse_genomes_project 18 49006126 49006744 - MGP_AJ_P0049667 Gm4950 protein_coding protein_coding MGP_AJ_T0050141.1 MGP_AJ_G0024547.1 mouse_genomes_project 18 75178626 75267433 + MGP_AJ_P0050141 Pstpip2 protein_coding protein_coding MGP_AJ_T0003826.1 MGP_AJ_G0003433.1 mouse_genomes_project 18 58947905 58949260 - Gm38165 antisense antisense MGP_AJ_T0003793.1 MGP_AJ_G0003406.1 mouse_genomes_project 18 3094147 3107550 + Gm17036 antisense antisense MGP_AJ_T0013359.1 MGP_AJ_G0011454.1 mouse_genomes_project 18 66633496 66634331 + processed_pseudogene processed_pseudogene MGP_AJ_T0050239.1 MGP_AJ_G0024578.1 mouse_genomes_project 18 82333350 82379395 + MGP_AJ_P0050239 Fbxo15 protein_coding protein_coding MGP_AJ_T0050241.1 MGP_AJ_G0024578.1 mouse_genomes_project 18 82350338 82379395 + MGP_AJ_P0050241 Fbxo15 protein_coding unknown_likely_coding MGP_AJ_T0049374.1 MGP_AJ_G0024263.1 mouse_genomes_project 18 34128738 34357515 + MGP_AJ_P0049374 Pcdha4 protein_coding protein_coding MGP_AJ_T0049375.1 MGP_AJ_G0024263.1 mouse_genomes_project 18 34128748 34131642 + Pcdha4 protein_coding retained_intron MGP_AJ_T0049376.1 MGP_AJ_G0024263.1 mouse_genomes_project 18 34128765 34357519 + MGP_AJ_P0049376 Pcdha4 protein_coding protein_coding MGP_AJ_T0049287.1 MGP_AJ_G0024232.1 mouse_genomes_project 18 32809994 32816230 - MGP_AJ_P0049287 Spata24 protein_coding protein_coding MGP_AJ_T0049288.1 MGP_AJ_G0024232.1 mouse_genomes_project 18 32814060 32816230 - MGP_AJ_P0049288 Spata24 protein_coding protein_coding MGP_AJ_T0100947.1 MGP_AJ_G0038913.1 mouse_genomes_project 18 20256461 20256587 + Gm22495 snoRNA snoRNA MGP_AJ_T0001011.1 MGP_AJ_G0000942.1 mouse_genomes_project 18 77723004 77726050 + TEC TEC MGP_AJ_T0049298.1 MGP_AJ_G0024236.1 mouse_genomes_project 18 32887524 32894401 - MGP_AJ_P0049298 Tmem173 protein_coding protein_coding MGP_AJ_T0049687.1 MGP_AJ_G0024402.1 mouse_genomes_project 18 50608665 50712247 + MGP_AJ_P0049687 Prdm6 protein_coding protein_coding MGP_AJ_T0049688.1 MGP_AJ_G0024402.1 mouse_genomes_project 18 50609170 50712247 + MGP_AJ_P0049688 Prdm6 protein_coding protein_coding MGP_AJ_T0049689.1 MGP_AJ_G0024402.1 mouse_genomes_project 18 50617648 50711459 + MGP_AJ_P0049689 Prdm6 protein_coding protein_coding MGP_AJ_T0049014.1 MGP_AJ_G0024125.1 mouse_genomes_project 18 9760872 9951081 - MGP_AJ_P0049014 Osbpl1a protein_coding protein_coding MGP_AJ_T0049015.1 MGP_AJ_G0024125.1 mouse_genomes_project 18 9761763 9906098 - MGP_AJ_P0049015 Osbpl1a protein_coding protein_coding MGP_AJ_T0049016.1 MGP_AJ_G0024125.1 mouse_genomes_project 18 9769505 9774084 - Osbpl1a protein_coding retained_intron MGP_AJ_T0049017.1 MGP_AJ_G0024125.1 mouse_genomes_project 18 9773749 9869956 - MGP_AJ_P0049017 Osbpl1a protein_coding protein_coding MGP_AJ_T0049018.1 MGP_AJ_G0024125.1 mouse_genomes_project 18 9775475 9896776 - Osbpl1a protein_coding retained_intron MGP_AJ_T0049019.1 MGP_AJ_G0024125.1 mouse_genomes_project 18 9779272 9875776 - MGP_AJ_P0049019 Osbpl1a protein_coding protein_coding MGP_AJ_T0049020.1 MGP_AJ_G0024125.1 mouse_genomes_project 18 9876886 9951081 - Osbpl1a protein_coding retained_intron MGP_AJ_T0049021.1 MGP_AJ_G0024125.1 mouse_genomes_project 18 9905991 9951017 - MGP_AJ_P0049021 Osbpl1a protein_coding protein_coding MGP_AJ_T0049022.1 MGP_AJ_G0024125.1 mouse_genomes_project 18 9914147 9951046 - MGP_AJ_P0049022 Osbpl1a protein_coding nonsense_mediated_decay MGP_AJ_T0049023.1 MGP_AJ_G0024125.1 mouse_genomes_project 18 9935650 9951032 - Osbpl1a protein_coding retained_intron MGP_AJ_T0049024.1 MGP_AJ_G0024125.1 mouse_genomes_project 18 9941213 9951029 - Osbpl1a protein_coding processed_transcript MGP_AJ_T0049193.1 MGP_AJ_G0024203.1 mouse_genomes_project 18 31438551 31444053 + Srp19 protein_coding processed_transcript MGP_AJ_T0049194.1 MGP_AJ_G0024203.1 mouse_genomes_project 18 31438827 31444229 + Srp19 protein_coding processed_transcript MGP_AJ_T0049195.1 MGP_AJ_G0024203.1 mouse_genomes_project 18 31438849 31444259 + Srp19 protein_coding retained_intron MGP_AJ_T0049196.1 MGP_AJ_G0024203.1 mouse_genomes_project 18 31438849 31444307 + MGP_AJ_P0049196 Srp19 protein_coding protein_coding MGP_AJ_T0049197.1 MGP_AJ_G0024203.1 mouse_genomes_project 18 31438862 31444129 + MGP_AJ_P0049197 Srp19 protein_coding protein_coding MGP_AJ_T0049198.1 MGP_AJ_G0024203.1 mouse_genomes_project 18 31438880 31444261 + MGP_AJ_P0049198 Srp19 protein_coding nonsense_mediated_decay MGP_AJ_T0099713.1 MGP_AJ_G0037679.1 mouse_genomes_project 18 80741100 80741266 - Gm24720 snRNA snRNA MGP_AJ_T0049446.1 MGP_AJ_G0024316.1 mouse_genomes_project 18 34924154 35011794 + MGP_AJ_P0049446 Pcdhga11 protein_coding protein_coding MGP_AJ_T0049721.1 MGP_AJ_G0024415.1 mouse_genomes_project 18 54650165 54660794 + MGP_AJ_P0049721 Ctxn3 protein_coding protein_coding MGP_AJ_T0099681.1 MGP_AJ_G0037647.1 mouse_genomes_project 18 6643419 6643522 - Gm23350 snRNA snRNA MGP_AJ_T0049821.1 MGP_AJ_G0024452.1 mouse_genomes_project 18 58987630 59044632 - MGP_AJ_P0049821 Afap1l1 protein_coding protein_coding MGP_AJ_T0049822.1 MGP_AJ_G0024452.1 mouse_genomes_project 18 58987630 59044541 - MGP_AJ_P0049822 Afap1l1 protein_coding nonsense_mediated_decay MGP_AJ_T0049823.1 MGP_AJ_G0024452.1 mouse_genomes_project 18 58988308 59044590 - Afap1l1 protein_coding retained_intron MGP_AJ_T0050144.1 MGP_AJ_G0024550.1 mouse_genomes_project 18 75442266 75465602 - MGP_AJ_P0050144 Slc14a1 protein_coding protein_coding MGP_AJ_T0050145.1 MGP_AJ_G0024550.1 mouse_genomes_project 18 75443824 75483579 - MGP_AJ_P0050145 Slc14a1 protein_coding protein_coding MGP_AJ_T0050146.1 MGP_AJ_G0024550.1 mouse_genomes_project 18 75443824 75465507 - MGP_AJ_P0050146 Slc14a1 protein_coding protein_coding MGP_AJ_T0049867.1 MGP_AJ_G0024471.1 mouse_genomes_project 18 61773577 61791440 - MGP_AJ_P0049867 Nars protein_coding protein_coding MGP_AJ_T0099690.1 MGP_AJ_G0037656.1 mouse_genomes_project 18 31118054 31118115 - Gm22788 snRNA snRNA MGP_AJ_T0049564.1 MGP_AJ_G0024351.1 mouse_genomes_project 18 40425297 40544846 + MGP_AJ_P0049564 Stk32a protein_coding protein_coding MGP_AJ_T0049097.1 MGP_AJ_G0024161.1 mouse_genomes_project 18 21120234 21135898 + MGP_AJ_P0049097 Zfp35 protein_coding protein_coding MGP_AJ_T0013347.1 MGP_AJ_G0011442.1 mouse_genomes_project 18 45795995 45797002 + processed_pseudogene processed_pseudogene MGP_AJ_T0050218.1 MGP_AJ_G0024572.1 mouse_genomes_project 18 81475269 81484555 + MGP_AJ_P0050218 Zadh2 protein_coding protein_coding MGP_AJ_T0013337.1 MGP_AJ_G0011432.1 mouse_genomes_project 18 35911164 35911766 - processed_pseudogene processed_pseudogene MGP_AJ_T0099705.1 MGP_AJ_G0037671.1 mouse_genomes_project 18 61188468 61188543 - Gm24384 snRNA snRNA MGP_AJ_T0003818.1 MGP_AJ_G0003427.1 mouse_genomes_project 18 36450410 36506816 - Gm15336 antisense antisense MGP_AJ_T0099712.1 MGP_AJ_G0037678.1 mouse_genomes_project 18 79734576 79734706 - Gm25060 snRNA snRNA MGP_AJ_T0048853.1 MGP_AJ_G0024081.1 mouse_genomes_project 18 223669 278123 + MGP_AJ_P0048853 Cul2 protein_coding protein_coding MGP_AJ_T0048854.1 MGP_AJ_G0024081.1 mouse_genomes_project 18 223906 277134 + MGP_AJ_P0048854 Cul2 protein_coding nonsense_mediated_decay MGP_AJ_T0048855.1 MGP_AJ_G0024081.1 mouse_genomes_project 18 223913 278126 + MGP_AJ_P0048855 Cul2 protein_coding protein_coding MGP_AJ_T0048856.1 MGP_AJ_G0024081.1 mouse_genomes_project 18 223938 273280 + MGP_AJ_P0048856 Cul2 protein_coding protein_coding MGP_AJ_T0048857.1 MGP_AJ_G0024081.1 mouse_genomes_project 18 266210 269009 + Cul2 protein_coding processed_transcript MGP_AJ_T0048858.1 MGP_AJ_G0024081.1 mouse_genomes_project 18 275632 276762 + Cul2 protein_coding processed_transcript MGP_AJ_T0049539.1 MGP_AJ_G0024336.1 mouse_genomes_project 18 36993837 36996423 + MGP_AJ_P0049539 Pabpc2 protein_coding protein_coding MGP_AJ_T0011451.1 MGP_AJ_G0009573.1 mouse_genomes_project 18 22748311 22748621 - Gm25845 misc_RNA misc_RNA MGP_AJ_T0049715.1 MGP_AJ_G0024412.1 mouse_genomes_project 18 54126582 54148622 - MGP_AJ_P0049715 C330018D20Rik protein_coding protein_coding MGP_AJ_T0049716.1 MGP_AJ_G0024412.1 mouse_genomes_project 18 54128363 54148608 - MGP_AJ_P0049716 C330018D20Rik protein_coding protein_coding MGP_AJ_T0049717.1 MGP_AJ_G0024412.1 mouse_genomes_project 18 54141782 54148500 - C330018D20Rik protein_coding processed_transcript MGP_AJ_T0049576.1 MGP_AJ_G0024356.1 mouse_genomes_project 18 41004669 41020995 - MGP_AJ_P0049576 Gm94 protein_coding protein_coding MGP_AJ_T0049571.1 MGP_AJ_G0024353.1 mouse_genomes_project 18 40749993 40910206 - MGP_AJ_P0049571 Jakmip2 protein_coding protein_coding MGP_AJ_T0049669.1 MGP_AJ_G0024393.1 mouse_genomes_project 18 49593025 49623187 + MGP_AJ_P0049669 Srfbp1 protein_coding protein_coding MGP_AJ_T0048977.1 MGP_AJ_G0024114.1 mouse_genomes_project 18 7934269 7967702 + MGP_AJ_P0048977 Gata6 protein_coding protein_coding MGP_AJ_T0017622.1 MGP_AJ_G0015338.1 mouse_genomes_project 18 46913396 46914778 + Gm16283 processed_transcript processed_transcript MGP_AJ_T0049199.1 MGP_AJ_G0024204.1 mouse_genomes_project 18 31452359 31480879 - MGP_AJ_P0049199 Reep5 protein_coding protein_coding MGP_AJ_T0049931.1 MGP_AJ_G0024494.1 mouse_genomes_project 18 64955481 64979690 - MGP_AJ_P0049931 Cep76 protein_coding protein_coding MGP_AJ_T0049742.1 MGP_AJ_G0024427.1 mouse_genomes_project 18 57533338 57544032 + MGP_AJ_P0049742 F830016B08Rik protein_coding protein_coding MGP_AJ_T0007043.1 MGP_AJ_G0005784.1 mouse_genomes_project 18 60025431 60031239 - 2700046A07Rik lincRNA lincRNA MGP_AJ_T0007044.1 MGP_AJ_G0005784.1 mouse_genomes_project 18 60029713 60031271 - 2700046A07Rik lincRNA lincRNA MGP_AJ_T0099698.1 MGP_AJ_G0037664.1 mouse_genomes_project 18 49298430 49298537 - Gm22259 snRNA snRNA MGP_AJ_T0013310.1 MGP_AJ_G0011405.1 mouse_genomes_project 18 4855288 4856021 + processed_pseudogene processed_pseudogene MGP_AJ_T0007018.1 MGP_AJ_G0005766.1 mouse_genomes_project 18 29482303 29502665 - A830052D11Rik lincRNA lincRNA MGP_AJ_T0049746.1 MGP_AJ_G0024430.1 mouse_genomes_project 18 57790623 57802932 + MGP_AJ_P0049746 Rbm22 protein_coding protein_coding MGP_AJ_T0049747.1 MGP_AJ_G0024430.1 mouse_genomes_project 18 57790651 57791374 + Rbm22 protein_coding retained_intron MGP_AJ_T0049748.1 MGP_AJ_G0024430.1 mouse_genomes_project 18 57790655 57800383 + Rbm22 protein_coding retained_intron MGP_AJ_T0049749.1 MGP_AJ_G0024430.1 mouse_genomes_project 18 57800543 57801268 + Rbm22 protein_coding retained_intron MGP_AJ_T0049750.1 MGP_AJ_G0024430.1 mouse_genomes_project 18 57800726 57802114 + Rbm22 protein_coding retained_intron MGP_AJ_T0049029.1 MGP_AJ_G0024130.1 mouse_genomes_project 18 11640294 11728996 - MGP_AJ_P0049029 Ss18 protein_coding protein_coding MGP_AJ_T0049030.1 MGP_AJ_G0024130.1 mouse_genomes_project 18 11661417 11728965 - MGP_AJ_P0049030 Ss18 protein_coding unknown_likely_coding MGP_AJ_T0049031.1 MGP_AJ_G0024130.1 mouse_genomes_project 18 11662238 11728965 - MGP_AJ_P0049031 Ss18 protein_coding unknown_likely_coding MGP_AJ_T0049032.1 MGP_AJ_G0024130.1 mouse_genomes_project 18 11665154 11728965 - MGP_AJ_P0049032 Ss18 protein_coding unknown_likely_coding MGP_AJ_T0011459.1 MGP_AJ_G0009581.1 mouse_genomes_project 18 40988519 40988832 + Gm23894 misc_RNA misc_RNA MGP_AJ_T0049162.1 MGP_AJ_G0024192.1 mouse_genomes_project 18 29361822 29391659 + MGP_AJ_P0049162 Ercc3 protein_coding protein_coding MGP_AJ_T0049163.1 MGP_AJ_G0024192.1 mouse_genomes_project 18 29361876 29391659 + Ercc3 protein_coding retained_intron MGP_AJ_T0049164.1 MGP_AJ_G0024192.1 mouse_genomes_project 18 29378776 29391599 + Ercc3 protein_coding processed_transcript MGP_AJ_T0050193.1 MGP_AJ_G0024567.1 mouse_genomes_project 18 79771846 79786126 - MGP_AJ_P0050193 Galr1 protein_coding protein_coding MGP_AJ_T0048860.1 MGP_AJ_G0024083.1 mouse_genomes_project 18 1036294 1053217 + MGP_AJ_P0048860 Lyzl1 protein_coding protein_coding MGP_AJ_T0048861.1 MGP_AJ_G0024083.1 mouse_genomes_project 18 1036324 1053217 + MGP_AJ_P0048861 Lyzl1 protein_coding protein_coding MGP_AJ_T0049319.1 MGP_AJ_G0024244.1 mouse_genomes_project 18 33673701 33684611 - MGP_AJ_P0049319 Hbegf protein_coding protein_coding MGP_AJ_T0099701.1 MGP_AJ_G0037667.1 mouse_genomes_project 18 58385950 58386055 - Gm26403 snRNA snRNA MGP_AJ_T0013331.1 MGP_AJ_G0011426.1 mouse_genomes_project 18 33779765 33780537 + processed_pseudogene processed_pseudogene MGP_AJ_T0050257.1 MGP_AJ_G0024585.1 mouse_genomes_project 18 86613125 87075558 - MGP_AJ_P0050257 Dok6 protein_coding protein_coding MGP_AJ_T0050258.1 MGP_AJ_G0024585.1 mouse_genomes_project 18 86774382 86865103 - Dok6 protein_coding retained_intron MGP_AJ_T0049423.1 MGP_AJ_G0024301.1 mouse_genomes_project 18 34825128 35011794 + MGP_AJ_P0049423 Pcdhga1 protein_coding protein_coding MGP_AJ_T0049424.1 MGP_AJ_G0024301.1 mouse_genomes_project 18 34825128 34828375 + MGP_AJ_P0049424 Pcdhga1 protein_coding protein_coding MGP_AJ_T0010270.1 MGP_AJ_G0008392.1 mouse_genomes_project 18 72271441 72271523 - Gm25594 miRNA miRNA MGP_AJ_T0013349.1 MGP_AJ_G0011444.1 mouse_genomes_project 18 49600397 49601295 - processed_pseudogene processed_pseudogene MGP_AJ_T0003810.1 MGP_AJ_G0003419.1 mouse_genomes_project 18 34186568 34198365 - Gm10545 antisense antisense MGP_AJ_T0049068.1 MGP_AJ_G0024153.1 mouse_genomes_project 18 18681278 18784443 - MGP_AJ_P0049068 Klhl14 protein_coding protein_coding MGP_AJ_T0049069.1 MGP_AJ_G0024153.1 mouse_genomes_project 18 18681280 18786793 - MGP_AJ_P0049069 Klhl14 protein_coding protein_coding MGP_AJ_T0049739.1 MGP_AJ_G0024424.1 mouse_genomes_project 18 57413141 57425778 + MGP_AJ_P0049739 protein_coding protein_coding MGP_AJ_T0098425.1 MGP_AJ_G0036409.1 mouse_genomes_project 18 71664082 71664647 - pseudogene pseudogene MGP_AJ_T0049354.1 MGP_AJ_G0024254.1 mouse_genomes_project 18 33918691 33931677 + MGP_AJ_P0049354 Ik protein_coding protein_coding MGP_AJ_T0049355.1 MGP_AJ_G0024254.1 mouse_genomes_project 18 33918729 33931680 + MGP_AJ_P0049355 Ik protein_coding unknown_likely_coding MGP_AJ_T0010240.1 MGP_AJ_G0008362.1 mouse_genomes_project 18 30015116 30015217 - Mir6361 miRNA miRNA MGP_AJ_T0011458.1 MGP_AJ_G0009580.1 mouse_genomes_project 18 39787887 39788043 + Gm27457 misc_RNA misc_RNA MGP_AJ_T0049552.1 MGP_AJ_G0024346.1 mouse_genomes_project 18 39489353 39559343 + MGP_AJ_P0049552 Rbm27 protein_coding protein_coding MGP_AJ_T0049553.1 MGP_AJ_G0024346.1 mouse_genomes_project 18 39489353 39559343 + MGP_AJ_P0049553 Rbm27 protein_coding protein_coding MGP_AJ_T0049052.1 MGP_AJ_G0024142.1 mouse_genomes_project 18 17558299 17594296 + MGP_AJ_P0049052 Dsg4 protein_coding protein_coding MGP_AJ_T0099697.1 MGP_AJ_G0037663.1 mouse_genomes_project 18 48753272 48753398 - Gm25785 snRNA snRNA MGP_AJ_T0003814.1 MGP_AJ_G0003423.1 mouse_genomes_project 18 34882518 34894257 - Gm37165 antisense antisense MGP_AJ_T0049932.1 MGP_AJ_G0024495.1 mouse_genomes_project 18 64979952 64992674 + MGP_AJ_P0049932 Psmg2 protein_coding protein_coding MGP_AJ_T0017639.1 MGP_AJ_G0015343.1 mouse_genomes_project 18 64644517 64651432 - B430212C06Rik processed_transcript processed_transcript MGP_AJ_T0017640.1 MGP_AJ_G0015343.1 mouse_genomes_project 18 64644517 64672954 - B430212C06Rik processed_transcript processed_transcript MGP_AJ_T0017641.1 MGP_AJ_G0015343.1 mouse_genomes_project 18 64644697 64672345 - B430212C06Rik processed_transcript processed_transcript MGP_AJ_T0017642.1 MGP_AJ_G0015343.1 mouse_genomes_project 18 64646326 64651611 - B430212C06Rik processed_transcript retained_intron MGP_AJ_T0017643.1 MGP_AJ_G0015343.1 mouse_genomes_project 18 64646339 64651671 - B430212C06Rik processed_transcript processed_transcript MGP_AJ_T0010266.1 MGP_AJ_G0008388.1 mouse_genomes_project 18 65625833 65625887 - Mir7219 miRNA miRNA MGP_AJ_T0049371.1 MGP_AJ_G0024261.1 mouse_genomes_project 18 34115303 34357515 + MGP_AJ_P0049371 Pcdha2 protein_coding protein_coding MGP_AJ_T0049372.1 MGP_AJ_G0024261.1 mouse_genomes_project 18 34115322 34357246 + MGP_AJ_P0049372 Pcdha2 protein_coding protein_coding MGP_AJ_T0049096.1 MGP_AJ_G0024160.1 mouse_genomes_project 18 21101845 21112075 - MGP_AJ_P0049096 Zscan30 protein_coding protein_coding MGP_AJ_T0100958.1 MGP_AJ_G0038924.1 mouse_genomes_project 18 32688201 32688397 + Snora74a snoRNA snoRNA MGP_AJ_T0049439.1 MGP_AJ_G0024311.1 mouse_genomes_project 18 34893841 35011794 + MGP_AJ_P0049439 Pcdhga8 protein_coding protein_coding MGP_AJ_T0049203.1 MGP_AJ_G0024207.1 mouse_genomes_project 18 31655205 31661159 + MGP_AJ_P0049203 Wnt8a protein_coding protein_coding MGP_AJ_T0048869.1 MGP_AJ_G0024087.1 mouse_genomes_project 18 1799888 1998945 + MGP_AJ_P0048869 Svil protein_coding protein_coding MGP_AJ_T0048870.1 MGP_AJ_G0024087.1 mouse_genomes_project 18 1799915 1939807 + Svil protein_coding retained_intron MGP_AJ_T0048871.1 MGP_AJ_G0024087.1 mouse_genomes_project 18 1800053 1939723 + Svil protein_coding retained_intron MGP_AJ_T0048872.1 MGP_AJ_G0024087.1 mouse_genomes_project 18 1874359 1928297 + MGP_AJ_P0048872 Svil protein_coding protein_coding MGP_AJ_T0048873.1 MGP_AJ_G0024087.1 mouse_genomes_project 18 1875164 1998264 + MGP_AJ_P0048873 Svil protein_coding protein_coding MGP_AJ_T0048874.1 MGP_AJ_G0024087.1 mouse_genomes_project 18 1875482 1883508 + Svil protein_coding processed_transcript MGP_AJ_T0048875.1 MGP_AJ_G0024087.1 mouse_genomes_project 18 1916526 1998948 + MGP_AJ_P0048875 Svil protein_coding protein_coding MGP_AJ_T0048876.1 MGP_AJ_G0024087.1 mouse_genomes_project 18 1921669 1998094 + MGP_AJ_P0048876 Svil protein_coding protein_coding MGP_AJ_T0048877.1 MGP_AJ_G0024087.1 mouse_genomes_project 18 1921671 1997818 + MGP_AJ_P0048877 Svil protein_coding nonsense_mediated_decay MGP_AJ_T0048878.1 MGP_AJ_G0024087.1 mouse_genomes_project 18 1927994 1998942 + MGP_AJ_P0048878 Svil protein_coding protein_coding MGP_AJ_T0048879.1 MGP_AJ_G0024087.1 mouse_genomes_project 18 1945888 1998945 + MGP_AJ_P0048879 Svil protein_coding nonsense_mediated_decay MGP_AJ_T0048880.1 MGP_AJ_G0024087.1 mouse_genomes_project 18 1975493 1976629 + Svil protein_coding retained_intron MGP_AJ_T0048881.1 MGP_AJ_G0024087.1 mouse_genomes_project 18 1984773 1996675 + MGP_AJ_P0048881 Svil protein_coding protein_coding MGP_AJ_T0048882.1 MGP_AJ_G0024087.1 mouse_genomes_project 18 1993906 1998872 + Svil protein_coding retained_intron MGP_AJ_T0003817.1 MGP_AJ_G0003426.1 mouse_genomes_project 18 36192684 36193242 - Gm15334 antisense antisense MGP_AJ_T0049820.1 MGP_AJ_G0024451.1 mouse_genomes_project 18 58969851 58983709 - MGP_AJ_P0049820 Grpel2 protein_coding protein_coding MGP_AJ_T0001004.1 MGP_AJ_G0000935.1 mouse_genomes_project 18 43362018 43362729 + TEC TEC MGP_AJ_T0049050.1 MGP_AJ_G0024140.1 mouse_genomes_project 18 17102984 17132826 - MGP_AJ_P0049050 Dsc1 protein_coding protein_coding MGP_AJ_T0007017.1 MGP_AJ_G0005765.1 mouse_genomes_project 18 29273918 29280846 + Gm26717 lincRNA lincRNA MGP_AJ_T0049060.1 MGP_AJ_G0024148.1 mouse_genomes_project 18 17944813 18025232 - MGP_AJ_P0049060 Trappc8 protein_coding protein_coding MGP_AJ_T0049061.1 MGP_AJ_G0024148.1 mouse_genomes_project 18 17944896 18025221 - MGP_AJ_P0049061 Trappc8 protein_coding unknown_likely_coding MGP_AJ_T0049062.1 MGP_AJ_G0024148.1 mouse_genomes_project 18 17973735 18025232 - MGP_AJ_P0049062 Trappc8 protein_coding protein_coding MGP_AJ_T0013362.1 MGP_AJ_G0011457.1 mouse_genomes_project 18 77199160 77200156 - processed_pseudogene processed_pseudogene MGP_AJ_T0049504.1 MGP_AJ_G0024331.1 mouse_genomes_project 18 35603969 35650802 + MGP_AJ_P0049504 Ndfip1 protein_coding protein_coding MGP_AJ_T0100953.1 MGP_AJ_G0038919.1 mouse_genomes_project 18 30885840 30885972 + Gm23639 snoRNA snoRNA MGP_AJ_T0048916.1 MGP_AJ_G0024092.1 mouse_genomes_project 18 3319163 3400055 - MGP_AJ_P0048916 Epc1 protein_coding protein_coding MGP_AJ_T0048917.1 MGP_AJ_G0024092.1 mouse_genomes_project 18 3319165 3374710 - MGP_AJ_P0048917 Epc1 protein_coding protein_coding MGP_AJ_T0048918.1 MGP_AJ_G0024092.1 mouse_genomes_project 18 3322804 3325107 - MGP_AJ_P0048918 Epc1 protein_coding protein_coding MGP_AJ_T0048919.1 MGP_AJ_G0024092.1 mouse_genomes_project 18 3373013 3374710 - MGP_AJ_P0048919 Epc1 protein_coding protein_coding MGP_AJ_T0007056.1 MGP_AJ_G0005795.1 mouse_genomes_project 18 80507940 80509273 - 1700095A13Rik lincRNA lincRNA MGP_AJ_T0050153.1 MGP_AJ_G0024556.1 mouse_genomes_project 18 77476493 77501688 - MGP_AJ_P0050153 Adnp2 protein_coding protein_coding MGP_AJ_T0050168.1 MGP_AJ_G0024560.1 mouse_genomes_project 18 77582234 77601320 - MGP_AJ_P0050168 Hsbp1l1 protein_coding protein_coding MGP_AJ_T0049623.1 MGP_AJ_G0024379.1 mouse_genomes_project 18 43914689 43923826 - MGP_AJ_P0049623 Atg12 protein_coding protein_coding MGP_AJ_T0049183.1 MGP_AJ_G0024201.1 mouse_genomes_project 18 30887003 31098489 - MGP_AJ_P0049183 Epb41l4a protein_coding protein_coding MGP_AJ_T0049554.1 MGP_AJ_G0024347.1 mouse_genomes_project 18 39611977 39614680 + MGP_AJ_P0049554 Pou4f3 protein_coding protein_coding MGP_AJ_T0049284.1 MGP_AJ_G0024231.1 mouse_genomes_project 18 32803655 32808543 - MGP_AJ_P0049284 Prob1 protein_coding protein_coding MGP_AJ_T0049285.1 MGP_AJ_G0024231.1 mouse_genomes_project 18 32803659 32805311 - Prob1 protein_coding processed_transcript MGP_AJ_T0049286.1 MGP_AJ_G0024231.1 mouse_genomes_project 18 32805471 32808492 - MGP_AJ_P0049286 Prob1 protein_coding protein_coding MGP_AJ_T0049202.1 MGP_AJ_G0024206.1 mouse_genomes_project 18 31553921 31621090 - MGP_AJ_P0049202 Fam13b protein_coding protein_coding MGP_AJ_T0049313.1 MGP_AJ_G0024242.1 mouse_genomes_project 18 33519917 33541014 + MGP_AJ_P0049313 Cystm1 protein_coding protein_coding MGP_AJ_T0049314.1 MGP_AJ_G0024242.1 mouse_genomes_project 18 33523001 33578480 + MGP_AJ_P0049314 Cystm1 protein_coding protein_coding MGP_AJ_T0049315.1 MGP_AJ_G0024242.1 mouse_genomes_project 18 33523067 33542549 + Cystm1 protein_coding retained_intron MGP_AJ_T0049316.1 MGP_AJ_G0024242.1 mouse_genomes_project 18 33523078 33568342 + MGP_AJ_P0049316 Cystm1 protein_coding protein_coding MGP_AJ_T0049317.1 MGP_AJ_G0024242.1 mouse_genomes_project 18 33540074 33578040 + MGP_AJ_P0049317 Cystm1 protein_coding protein_coding MGP_AJ_T0007050.1 MGP_AJ_G0005790.1 mouse_genomes_project 18 73160407 73162812 + lincRNA lincRNA MGP_AJ_T0007006.1 MGP_AJ_G0005758.1 mouse_genomes_project 18 7930851 7933251 - 1010001N08Rik lincRNA lincRNA MGP_AJ_T0007007.1 MGP_AJ_G0005758.1 mouse_genomes_project 18 7931695 7934327 - 1010001N08Rik lincRNA lincRNA MGP_AJ_T0003820.1 MGP_AJ_G0003429.1 mouse_genomes_project 18 40158994 40162416 + 4933407I08Rik antisense antisense MGP_AJ_T0098638.1 MGP_AJ_G0036622.1 mouse_genomes_project 18 72387289 72387381 + Gm27781 rRNA rRNA MGP_AJ_T0049579.1 MGP_AJ_G0024358.1 mouse_genomes_project 18 41256932 41261247 + MGP_AJ_P0049579 Spink14 protein_coding protein_coding MGP_AJ_T0049580.1 MGP_AJ_G0024358.1 mouse_genomes_project 18 41257761 41261247 + MGP_AJ_P0049580 Spink14 protein_coding protein_coding MGP_AJ_T0013342.1 MGP_AJ_G0011437.1 mouse_genomes_project 18 42464040 42464316 - processed_pseudogene processed_pseudogene MGP_AJ_T0098424.1 MGP_AJ_G0036408.1 mouse_genomes_project 18 57654693 57655336 + pseudogene pseudogene MGP_AJ_T0050108.1 MGP_AJ_G0024538.1 mouse_genomes_project 18 74305245 74375238 - MGP_AJ_P0050108 Katnal2 protein_coding nonsense_mediated_decay MGP_AJ_T0050109.1 MGP_AJ_G0024538.1 mouse_genomes_project 18 74305245 74375281 - MGP_AJ_P0050109 Katnal2 protein_coding nonsense_mediated_decay MGP_AJ_T0050110.1 MGP_AJ_G0024538.1 mouse_genomes_project 18 74305482 74375219 - MGP_AJ_P0050110 Katnal2 protein_coding protein_coding MGP_AJ_T0050111.1 MGP_AJ_G0024538.1 mouse_genomes_project 18 74306557 74334971 - Katnal2 protein_coding processed_transcript MGP_AJ_T0050112.1 MGP_AJ_G0024538.1 mouse_genomes_project 18 74321297 74375291 - MGP_AJ_P0050112 Katnal2 protein_coding protein_coding MGP_AJ_T0050113.1 MGP_AJ_G0024538.1 mouse_genomes_project 18 74329791 74340130 - Katnal2 protein_coding processed_transcript MGP_AJ_T0050114.1 MGP_AJ_G0024538.1 mouse_genomes_project 18 74330639 74336301 - Katnal2 protein_coding retained_intron MGP_AJ_T0050115.1 MGP_AJ_G0024538.1 mouse_genomes_project 18 74338139 74375282 - MGP_AJ_P0050115 Katnal2 protein_coding protein_coding MGP_AJ_T0050116.1 MGP_AJ_G0024538.1 mouse_genomes_project 18 74338631 74375293 - MGP_AJ_P0050116 Katnal2 protein_coding protein_coding MGP_AJ_T0049859.1 MGP_AJ_G0024467.1 mouse_genomes_project 18 60986601 61267304 + MGP_AJ_P0049859 Wdr7 protein_coding protein_coding MGP_AJ_T0049044.1 MGP_AJ_G0024138.1 mouse_genomes_project 18 16978219 17019954 - MGP_AJ_P0049044 Dsc3 protein_coding protein_coding MGP_AJ_T0049045.1 MGP_AJ_G0024138.1 mouse_genomes_project 18 16980954 17019782 - MGP_AJ_P0049045 Dsc3 protein_coding unknown_likely_coding MGP_AJ_T0049738.1 MGP_AJ_G0024423.1 mouse_genomes_project 18 56367097 56609507 + MGP_AJ_P0049738 Chsy3 protein_coding protein_coding MGP_AJ_T0013312.1 MGP_AJ_G0011407.1 mouse_genomes_project 18 6797938 6798757 + processed_pseudogene processed_pseudogene MGP_AJ_T0100966.1 MGP_AJ_G0038932.1 mouse_genomes_project 18 63859722 63859833 - Gm24679 snoRNA snoRNA MGP_AJ_T0049666.1 MGP_AJ_G0024390.1 mouse_genomes_project 18 48248591 48446349 + MGP_AJ_P0049666 Prr16 protein_coding protein_coding MGP_AJ_T0049544.1 MGP_AJ_G0024341.1 mouse_genomes_project 18 39196628 39209498 - MGP_AJ_P0049544 Grxcr2 protein_coding protein_coding MGP_AJ_T0098423.1 MGP_AJ_G0036407.1 mouse_genomes_project 18 7032844 7033357 - pseudogene pseudogene MGP_AJ_T0049500.1 MGP_AJ_G0024330.1 mouse_genomes_project 18 35507318 35518606 - MGP_AJ_P0049500 Gnpda1 protein_coding protein_coding MGP_AJ_T0049501.1 MGP_AJ_G0024330.1 mouse_genomes_project 18 35508285 35511673 - Gnpda1 protein_coding processed_transcript MGP_AJ_T0049502.1 MGP_AJ_G0024330.1 mouse_genomes_project 18 35512699 35514681 - Gnpda1 protein_coding retained_intron MGP_AJ_T0049503.1 MGP_AJ_G0024330.1 mouse_genomes_project 18 35512791 35518512 - MGP_AJ_P0049503 Gnpda1 protein_coding protein_coding MGP_AJ_T0007010.1 MGP_AJ_G0005761.1 mouse_genomes_project 18 14080939 14199249 + 1700001G01Rik lincRNA lincRNA MGP_AJ_T0007011.1 MGP_AJ_G0005761.1 mouse_genomes_project 18 14080964 14109410 + 1700001G01Rik lincRNA lincRNA MGP_AJ_T0007012.1 MGP_AJ_G0005761.1 mouse_genomes_project 18 14097463 14199249 + 1700001G01Rik lincRNA lincRNA MGP_AJ_T0007013.1 MGP_AJ_G0005761.1 mouse_genomes_project 18 14187476 14199204 + 1700001G01Rik lincRNA lincRNA MGP_AJ_T0010264.1 MGP_AJ_G0008386.1 mouse_genomes_project 18 62544223 62544289 + Mir122 miRNA miRNA MGP_AJ_T0099679.1 MGP_AJ_G0037645.1 mouse_genomes_project 18 631386 631450 - Gm23643 snRNA snRNA MGP_AJ_T0049338.1 MGP_AJ_G0024248.1 mouse_genomes_project 18 33837330 33842827 - MGP_AJ_P0049338 Sra1 protein_coding protein_coding MGP_AJ_T0049339.1 MGP_AJ_G0024248.1 mouse_genomes_project 18 33837895 33840961 - MGP_AJ_P0049339 Sra1 protein_coding nonsense_mediated_decay MGP_AJ_T0049340.1 MGP_AJ_G0024248.1 mouse_genomes_project 18 33837921 33840981 - Sra1 protein_coding retained_intron MGP_AJ_T0049341.1 MGP_AJ_G0024248.1 mouse_genomes_project 18 33838078 33840960 - MGP_AJ_P0049341 Sra1 protein_coding protein_coding MGP_AJ_T0049342.1 MGP_AJ_G0024248.1 mouse_genomes_project 18 33840496 33840951 - Sra1 protein_coding retained_intron MGP_AJ_T0049343.1 MGP_AJ_G0024248.1 mouse_genomes_project 18 33842790 33849787 - MGP_AJ_P0049343 Sra1 protein_coding protein_coding MGP_AJ_T0049140.1 MGP_AJ_G0024176.1 mouse_genomes_project 18 28097849 28448362 - MGP_AJ_P0049140 Rit2 protein_coding nonsense_mediated_decay MGP_AJ_T0049141.1 MGP_AJ_G0024176.1 mouse_genomes_project 18 28098675 28448205 - MGP_AJ_P0049141 Rit2 protein_coding protein_coding MGP_AJ_T0049142.1 MGP_AJ_G0024176.1 mouse_genomes_project 18 28286137 28351599 - Rit2 protein_coding processed_transcript MGP_AJ_T0049143.1 MGP_AJ_G0024176.1 mouse_genomes_project 18 28343243 28448183 - MGP_AJ_P0049143 Rit2 protein_coding protein_coding MGP_AJ_T0048984.1 MGP_AJ_G0024119.1 mouse_genomes_project 18 9174156 9186422 + 3110002H16Rik protein_coding retained_intron MGP_AJ_T0048985.1 MGP_AJ_G0024119.1 mouse_genomes_project 18 9174156 9195275 + MGP_AJ_P0048985 3110002H16Rik protein_coding protein_coding MGP_AJ_T0048986.1 MGP_AJ_G0024119.1 mouse_genomes_project 18 9174178 9185885 + 3110002H16Rik protein_coding retained_intron MGP_AJ_T0048987.1 MGP_AJ_G0024119.1 mouse_genomes_project 18 9174191 9195252 + 3110002H16Rik protein_coding retained_intron MGP_AJ_T0048988.1 MGP_AJ_G0024119.1 mouse_genomes_project 18 9184886 9190232 + MGP_AJ_P0048988 3110002H16Rik protein_coding protein_coding MGP_AJ_T0048989.1 MGP_AJ_G0024119.1 mouse_genomes_project 18 9185838 9193513 + MGP_AJ_P0048989 3110002H16Rik protein_coding nonsense_mediated_decay MGP_AJ_T0048990.1 MGP_AJ_G0024119.1 mouse_genomes_project 18 9190725 9195252 + 3110002H16Rik protein_coding retained_intron MGP_AJ_T0048991.1 MGP_AJ_G0024119.1 mouse_genomes_project 18 9190949 9195210 + 3110002H16Rik protein_coding retained_intron MGP_AJ_T0048992.1 MGP_AJ_G0024119.1 mouse_genomes_project 18 9194284 9195252 + 3110002H16Rik protein_coding retained_intron MGP_AJ_T0049684.1 MGP_AJ_G0024400.1 mouse_genomes_project 18 50385287 50531129 + MGP_AJ_P0049684 Snx24 protein_coding protein_coding MGP_AJ_T0049685.1 MGP_AJ_G0024400.1 mouse_genomes_project 18 50385394 50531129 + MGP_AJ_P0049685 Snx24 protein_coding protein_coding MGP_AJ_T0003798.1 MGP_AJ_G0003410.1 mouse_genomes_project 18 9506313 9509550 - Gm29200 antisense antisense MGP_AJ_T0049431.1 MGP_AJ_G0024306.1 mouse_genomes_project 18 34854142 35011794 + MGP_AJ_P0049431 Pcdhgb2 protein_coding protein_coding MGP_AJ_T0049432.1 MGP_AJ_G0024306.1 mouse_genomes_project 18 34854149 34860936 + Pcdhgb2 protein_coding retained_intron MGP_AJ_T0049641.1 MGP_AJ_G0024385.1 mouse_genomes_project 18 46991551 47123071 + MGP_AJ_P0049641 Dmxl1 protein_coding protein_coding MGP_AJ_T0049642.1 MGP_AJ_G0024385.1 mouse_genomes_project 18 46991878 47124290 + MGP_AJ_P0049642 Dmxl1 protein_coding protein_coding MGP_AJ_T0049643.1 MGP_AJ_G0024385.1 mouse_genomes_project 18 46991971 47121214 + MGP_AJ_P0049643 Dmxl1 protein_coding unknown_likely_coding MGP_AJ_T0049644.1 MGP_AJ_G0024385.1 mouse_genomes_project 18 47053104 47092215 + Dmxl1 protein_coding retained_intron MGP_AJ_T0049645.1 MGP_AJ_G0024385.1 mouse_genomes_project 18 47109049 47113681 + Dmxl1 protein_coding retained_intron MGP_AJ_T0049646.1 MGP_AJ_G0024385.1 mouse_genomes_project 18 47114831 47118465 + Dmxl1 protein_coding retained_intron MGP_AJ_T0049161.1 MGP_AJ_G0024191.1 mouse_genomes_project 18 29283532 29358275 + MGP_AJ_P0049161 Map3k2 protein_coding protein_coding MGP_AJ_T0010250.1 MGP_AJ_G0008372.1 mouse_genomes_project 18 53114460 53114549 - Gm23335 miRNA miRNA MGP_AJ_T0100957.1 MGP_AJ_G0038923.1 mouse_genomes_project 18 32685661 32685802 + Mir1949 snoRNA snoRNA MGP_AJ_T0049302.1 MGP_AJ_G0024239.1 mouse_genomes_project 18 33129726 33180387 + MGP_AJ_P0049302 Psd2 protein_coding protein_coding MGP_AJ_T0049303.1 MGP_AJ_G0024239.1 mouse_genomes_project 18 33129961 33180387 + MGP_AJ_P0049303 Psd2 protein_coding protein_coding MGP_AJ_T0049304.1 MGP_AJ_G0024239.1 mouse_genomes_project 18 33129963 33180390 + MGP_AJ_P0049304 Psd2 protein_coding protein_coding MGP_AJ_T0049305.1 MGP_AJ_G0024239.1 mouse_genomes_project 18 33129998 33180255 + MGP_AJ_P0049305 Psd2 protein_coding nonsense_mediated_decay MGP_AJ_T0049306.1 MGP_AJ_G0024239.1 mouse_genomes_project 18 33130001 33180349 + MGP_AJ_P0049306 Psd2 protein_coding protein_coding MGP_AJ_T0049307.1 MGP_AJ_G0024239.1 mouse_genomes_project 18 33153123 33171727 + Psd2 protein_coding retained_intron MGP_AJ_T0049098.1 MGP_AJ_G0024162.1 mouse_genomes_project 18 21140224 21151343 - MGP_AJ_P0049098 Zfp24 protein_coding protein_coding MGP_AJ_T0049099.1 MGP_AJ_G0024162.1 mouse_genomes_project 18 21144449 21150853 - MGP_AJ_P0049099 Zfp24 protein_coding protein_coding MGP_AJ_T0049100.1 MGP_AJ_G0024162.1 mouse_genomes_project 18 21148500 21150903 - MGP_AJ_P0049100 Zfp24 protein_coding protein_coding MGP_AJ_T0050078.1 MGP_AJ_G0024529.1 mouse_genomes_project 18 72369428 72373501 + MGP_AJ_P0050078 BC031181 protein_coding protein_coding MGP_AJ_T0049425.1 MGP_AJ_G0024302.1 mouse_genomes_project 18 34832591 35011791 + MGP_AJ_P0049425 Pcdhga2 protein_coding protein_coding MGP_AJ_T0010257.1 MGP_AJ_G0008379.1 mouse_genomes_project 18 58198390 58198450 + Mir7220 miRNA miRNA MGP_AJ_T0049356.1 MGP_AJ_G0024255.1 mouse_genomes_project 18 33934277 33937753 + MGP_AJ_P0049356 Wdr55 protein_coding protein_coding MGP_AJ_T0049877.1 MGP_AJ_G0024476.1 mouse_genomes_project 18 62872046 62982842 + MGP_AJ_P0049877 Zfp532 protein_coding protein_coding MGP_AJ_T0049878.1 MGP_AJ_G0024476.1 mouse_genomes_project 18 62872198 62915754 + MGP_AJ_P0049878 Zfp532 protein_coding protein_coding MGP_AJ_T0049879.1 MGP_AJ_G0024476.1 mouse_genomes_project 18 62872903 62915743 + MGP_AJ_P0049879 Zfp532 protein_coding protein_coding MGP_AJ_T0049880.1 MGP_AJ_G0024476.1 mouse_genomes_project 18 62872909 62915311 + MGP_AJ_P0049880 Zfp532 protein_coding protein_coding MGP_AJ_T0049881.1 MGP_AJ_G0024476.1 mouse_genomes_project 18 62873557 62917569 + MGP_AJ_P0049881 Zfp532 protein_coding protein_coding MGP_AJ_T0049882.1 MGP_AJ_G0024476.1 mouse_genomes_project 18 62874046 62915890 + MGP_AJ_P0049882 Zfp532 protein_coding protein_coding MGP_AJ_T0049883.1 MGP_AJ_G0024476.1 mouse_genomes_project 18 62874101 62915318 + MGP_AJ_P0049883 Zfp532 protein_coding protein_coding MGP_AJ_T0049884.1 MGP_AJ_G0024476.1 mouse_genomes_project 18 62874225 62982340 + MGP_AJ_P0049884 Zfp532 protein_coding nonsense_mediated_decay MGP_AJ_T0049885.1 MGP_AJ_G0024476.1 mouse_genomes_project 18 62874334 62982339 + MGP_AJ_P0049885 Zfp532 protein_coding protein_coding MGP_AJ_T0049886.1 MGP_AJ_G0024476.1 mouse_genomes_project 18 62874422 62915517 + MGP_AJ_P0049886 Zfp532 protein_coding protein_coding MGP_AJ_T0049887.1 MGP_AJ_G0024476.1 mouse_genomes_project 18 62874746 62982333 + MGP_AJ_P0049887 Zfp532 protein_coding protein_coding MGP_AJ_T0049888.1 MGP_AJ_G0024476.1 mouse_genomes_project 18 62875233 62915483 + MGP_AJ_P0049888 Zfp532 protein_coding protein_coding MGP_AJ_T0049889.1 MGP_AJ_G0024476.1 mouse_genomes_project 18 62875755 62915428 + MGP_AJ_P0049889 Zfp532 protein_coding protein_coding MGP_AJ_T0049890.1 MGP_AJ_G0024476.1 mouse_genomes_project 18 62911637 62917161 + Zfp532 protein_coding retained_intron MGP_AJ_T0049891.1 MGP_AJ_G0024476.1 mouse_genomes_project 18 62917474 62976754 + Zfp532 protein_coding retained_intron MGP_AJ_T0049892.1 MGP_AJ_G0024476.1 mouse_genomes_project 18 62938685 62979033 + Zfp532 protein_coding processed_transcript MGP_AJ_T0013358.1 MGP_AJ_G0011453.1 mouse_genomes_project 18 61887981 61888658 - processed_pseudogene processed_pseudogene MGP_AJ_T0049449.1 MGP_AJ_G0024318.1 mouse_genomes_project 18 34975683 34979063 + Pcdhgc3 protein_coding retained_intron MGP_AJ_T0049450.1 MGP_AJ_G0024318.1 mouse_genomes_project 18 34975729 35011794 + MGP_AJ_P0049450 Pcdhgc3 protein_coding protein_coding MGP_AJ_T0049451.1 MGP_AJ_G0024318.1 mouse_genomes_project 18 34975735 35011794 + MGP_AJ_P0049451 Pcdhgc3 protein_coding nonsense_mediated_decay MGP_AJ_T0049938.1 MGP_AJ_G0024498.1 mouse_genomes_project 18 65145020 65240760 + MGP_AJ_P0049938 Cep192 protein_coding protein_coding MGP_AJ_T0049615.1 MGP_AJ_G0024375.1 mouse_genomes_project 18 43739434 43756206 - MGP_AJ_P0049615 Ticam2 protein_coding protein_coding MGP_AJ_T0049617.1 MGP_AJ_G0024375.1 mouse_genomes_project 18 43752885 43756206 - Ticam2 protein_coding retained_intron MGP_AJ_T0049572.1 MGP_AJ_G0024354.1 mouse_genomes_project 18 40948129 40962233 - MGP_AJ_P0049572 Spink1 protein_coding protein_coding MGP_AJ_T0049396.1 MGP_AJ_G0024277.1 mouse_genomes_project 18 34456443 34459031 + MGP_AJ_P0049396 Pcdhb1 protein_coding protein_coding MGP_AJ_T0010252.1 MGP_AJ_G0008374.1 mouse_genomes_project 18 53696408 53696468 + Mir1258 miRNA miRNA MGP_AJ_T0049752.1 MGP_AJ_G0024432.1 mouse_genomes_project 18 57823215 57853772 - MGP_AJ_P0049752 Synpo protein_coding protein_coding MGP_AJ_T0049753.1 MGP_AJ_G0024432.1 mouse_genomes_project 18 57823224 57854009 - MGP_AJ_P0049753 Synpo protein_coding protein_coding MGP_AJ_T0049754.1 MGP_AJ_G0024432.1 mouse_genomes_project 18 57823232 57859328 - MGP_AJ_P0049754 Synpo protein_coding protein_coding MGP_AJ_T0049755.1 MGP_AJ_G0024432.1 mouse_genomes_project 18 57823233 57829906 - Synpo protein_coding processed_transcript MGP_AJ_T0049756.1 MGP_AJ_G0024432.1 mouse_genomes_project 18 57829614 57853672 - MGP_AJ_P0049756 Synpo protein_coding protein_coding MGP_AJ_T0049757.1 MGP_AJ_G0024432.1 mouse_genomes_project 18 57829615 57839515 - MGP_AJ_P0049757 Synpo protein_coding protein_coding MGP_AJ_T0049758.1 MGP_AJ_G0024432.1 mouse_genomes_project 18 57829617 57878784 - MGP_AJ_P0049758 Synpo protein_coding protein_coding MGP_AJ_T0049759.1 MGP_AJ_G0024432.1 mouse_genomes_project 18 57833517 57852761 - MGP_AJ_P0049759 Synpo protein_coding protein_coding MGP_AJ_T0049760.1 MGP_AJ_G0024432.1 mouse_genomes_project 18 57833668 57853698 - Synpo protein_coding processed_transcript MGP_AJ_T0049761.1 MGP_AJ_G0024432.1 mouse_genomes_project 18 57835294 57890647 - Synpo protein_coding processed_transcript MGP_AJ_T0049762.1 MGP_AJ_G0024432.1 mouse_genomes_project 18 57858972 57878737 - Synpo protein_coding processed_transcript MGP_AJ_T0049763.1 MGP_AJ_G0024432.1 mouse_genomes_project 18 57875267 57878737 - Synpo protein_coding processed_transcript MGP_AJ_T0049833.1 MGP_AJ_G0024461.1 mouse_genomes_project 18 59913795 59926671 + Spink10 protein_coding processed_transcript MGP_AJ_T0049834.1 MGP_AJ_G0024461.1 mouse_genomes_project 18 59917990 59919890 + Spink10 protein_coding processed_transcript MGP_AJ_T0049835.1 MGP_AJ_G0024461.1 mouse_genomes_project 18 59918044 59920971 + Spink10 protein_coding processed_transcript MGP_AJ_T0049836.1 MGP_AJ_G0024461.1 mouse_genomes_project 18 59918400 59928816 + MGP_AJ_P0049836 Spink10 protein_coding protein_coding MGP_AJ_T0013308.1 MGP_AJ_G0011403.1 mouse_genomes_project 18 3253674 3253983 - processed_pseudogene processed_pseudogene MGP_AJ_T0011469.1 MGP_AJ_G0009591.1 mouse_genomes_project 18 82217039 82217342 + Gm22819 misc_RNA misc_RNA MGP_AJ_T0049200.1 MGP_AJ_G0024205.1 mouse_genomes_project 18 31517748 31553366 + MGP_AJ_P0049200 Pkd2l2 protein_coding protein_coding MGP_AJ_T0049201.1 MGP_AJ_G0024205.1 mouse_genomes_project 18 31517748 31554359 + MGP_AJ_P0049201 Pkd2l2 protein_coding protein_coding MGP_AJ_T0050058.1 MGP_AJ_G0024522.1 mouse_genomes_project 18 71578632 71583981 + MGP_AJ_P0050058 Cxxc1 protein_coding protein_coding MGP_AJ_T0010241.1 MGP_AJ_G0008363.1 mouse_genomes_project 18 32685736 32685806 + Mir1949 miRNA miRNA MGP_AJ_T0000999.1 MGP_AJ_G0000930.1 mouse_genomes_project 18 2472468 2476137 - TEC TEC MGP_AJ_T0100948.1 MGP_AJ_G0038914.1 mouse_genomes_project 18 23640661 23640792 + Gm23674 snoRNA snoRNA MGP_AJ_T0049026.1 MGP_AJ_G0024127.1 mouse_genomes_project 18 10017423 10035919 + MGP_AJ_P0049026 Hrh4 protein_coding protein_coding MGP_AJ_T0048945.1 MGP_AJ_G0024102.1 mouse_genomes_project 18 6218999 6352305 - MGP_AJ_P0048945 Ccny protein_coding protein_coding MGP_AJ_T0050136.1 MGP_AJ_G0024546.1 mouse_genomes_project 18 75156954 75166095 + MGP_AJ_P0050136 Atp5a1 protein_coding protein_coding MGP_AJ_T0050137.1 MGP_AJ_G0024546.1 mouse_genomes_project 18 75157181 75166092 + MGP_AJ_P0050137 Atp5a1 protein_coding protein_coding MGP_AJ_T0050138.1 MGP_AJ_G0024546.1 mouse_genomes_project 18 75157217 75165881 + MGP_AJ_P0050138 Atp5a1 protein_coding nonsense_mediated_decay MGP_AJ_T0050139.1 MGP_AJ_G0024546.1 mouse_genomes_project 18 75162180 75164325 + Atp5a1 protein_coding retained_intron MGP_AJ_T0050140.1 MGP_AJ_G0024546.1 mouse_genomes_project 18 75163057 75165115 + Atp5a1 protein_coding retained_intron MGP_AJ_T0098628.1 MGP_AJ_G0036612.1 mouse_genomes_project 18 16881375 16881473 + Gm24238 rRNA rRNA MGP_AJ_T0013309.1 MGP_AJ_G0011404.1 mouse_genomes_project 18 4504976 4505384 + processed_pseudogene processed_pseudogene MGP_AJ_T0049182.1 MGP_AJ_G0024200.1 mouse_genomes_project 18 30562839 30572295 + MGP_AJ_P0049182 Gm10549 protein_coding protein_coding MGP_AJ_T0048946.1 MGP_AJ_G0024103.1 mouse_genomes_project 18 6499732 6504782 - MGP_AJ_P0048946 Cetn1 protein_coding protein_coding MGP_AJ_T0050079.1 MGP_AJ_G0024530.1 mouse_genomes_project 18 72382209 72655144 + MGP_AJ_P0050079 Dym protein_coding protein_coding MGP_AJ_T0049506.1 MGP_AJ_G0024333.1 mouse_genomes_project 18 35790024 35838296 + Arhgap26 protein_coding processed_transcript MGP_AJ_T0049507.1 MGP_AJ_G0024333.1 mouse_genomes_project 18 35790090 35982882 + Arhgap26 protein_coding processed_transcript MGP_AJ_T0049508.1 MGP_AJ_G0024333.1 mouse_genomes_project 18 35818327 35835321 + Arhgap26 protein_coding processed_transcript MGP_AJ_T0049509.1 MGP_AJ_G0024333.1 mouse_genomes_project 18 35869208 35969787 + Arhgap26 protein_coding processed_transcript MGP_AJ_T0049510.1 MGP_AJ_G0024333.1 mouse_genomes_project 18 35869208 36310150 + MGP_AJ_P0049510 Arhgap26 protein_coding protein_coding MGP_AJ_T0049518.1 MGP_AJ_G0024333.1 mouse_genomes_project 18 36087570 36169742 + Arhgap26 protein_coding processed_transcript MGP_AJ_T0049519.1 MGP_AJ_G0024333.1 mouse_genomes_project 18 36087761 36129185 + MGP_AJ_P0049519 Arhgap26 protein_coding protein_coding MGP_AJ_T0049520.1 MGP_AJ_G0024333.1 mouse_genomes_project 18 36154173 36169405 + Arhgap26 protein_coding processed_transcript MGP_AJ_T0049521.1 MGP_AJ_G0024333.1 mouse_genomes_project 18 36192194 36299769 + Arhgap26 protein_coding retained_intron MGP_AJ_T0049522.1 MGP_AJ_G0024333.1 mouse_genomes_project 18 36192194 36582374 + MGP_AJ_P0049522 Arhgap26 protein_coding protein_coding MGP_AJ_T0049523.1 MGP_AJ_G0024333.1 mouse_genomes_project 18 36192525 36577302 + MGP_AJ_P0049523 Arhgap26 protein_coding protein_coding MGP_AJ_T0049524.1 MGP_AJ_G0024333.1 mouse_genomes_project 18 36298930 36328040 + Arhgap26 protein_coding processed_transcript MGP_AJ_T0049525.1 MGP_AJ_G0024333.1 mouse_genomes_project 18 36430063 36578640 + MGP_AJ_P0049525 Arhgap26 protein_coding protein_coding MGP_AJ_T0049526.1 MGP_AJ_G0024333.1 mouse_genomes_project 18 36490704 36582374 + MGP_AJ_P0049526 Arhgap26 protein_coding protein_coding MGP_AJ_T0049527.1 MGP_AJ_G0024333.1 mouse_genomes_project 18 36495570 36511502 + Arhgap26 protein_coding processed_transcript MGP_AJ_T0049528.1 MGP_AJ_G0024333.1 mouse_genomes_project 18 36500910 36577269 + MGP_AJ_P0049528 Arhgap26 protein_coding nonsense_mediated_decay MGP_AJ_T0049529.1 MGP_AJ_G0024333.1 mouse_genomes_project 18 36500910 36565650 + MGP_AJ_P0049529 Arhgap26 protein_coding protein_coding MGP_AJ_T0049530.1 MGP_AJ_G0024333.1 mouse_genomes_project 18 36568711 36573195 + Arhgap26 protein_coding processed_transcript MGP_AJ_T0011462.1 MGP_AJ_G0009584.1 mouse_genomes_project 18 56934148 56934442 - Gm26028 misc_RNA misc_RNA MGP_AJ_T0049638.1 MGP_AJ_G0024384.1 mouse_genomes_project 18 46853291 46913204 - MGP_AJ_P0049638 Dtwd2 protein_coding protein_coding MGP_AJ_T0049639.1 MGP_AJ_G0024384.1 mouse_genomes_project 18 46853774 46913204 - MGP_AJ_P0049639 Dtwd2 protein_coding protein_coding MGP_AJ_T0049640.1 MGP_AJ_G0024384.1 mouse_genomes_project 18 46854426 46891528 - Dtwd2 protein_coding processed_transcript MGP_AJ_T0049923.1 MGP_AJ_G0024487.1 mouse_genomes_project 18 64543482 64564941 - MGP_AJ_P0049923 Mppe1 protein_coding protein_coding MGP_AJ_T0003801.1 MGP_AJ_G0003413.1 mouse_genomes_project 18 18783522 18787223 + 4930426D05Rik antisense antisense MGP_AJ_T0003802.1 MGP_AJ_G0003413.1 mouse_genomes_project 18 18783639 18787216 + 4930426D05Rik antisense antisense MGP_AJ_T0003803.1 MGP_AJ_G0003413.1 mouse_genomes_project 18 18784634 18787232 + 4930426D05Rik antisense antisense MGP_AJ_T0003804.1 MGP_AJ_G0003413.1 mouse_genomes_project 18 18784637 18788180 + 4930426D05Rik antisense antisense MGP_AJ_T0007015.1 MGP_AJ_G0005763.1 mouse_genomes_project 18 28905963 28913773 - Gm26533 lincRNA lincRNA MGP_AJ_T0049610.1 MGP_AJ_G0024371.1 mouse_genomes_project 18 43327815 43361816 - MGP_AJ_P0049610 Trim36 protein_coding protein_coding MGP_AJ_T0049611.1 MGP_AJ_G0024371.1 mouse_genomes_project 18 43327815 43375131 - MGP_AJ_P0049611 Trim36 protein_coding protein_coding MGP_AJ_T0011468.1 MGP_AJ_G0009590.1 mouse_genomes_project 18 82130265 82130555 - Gm22014 misc_RNA misc_RNA MGP_AJ_T0050219.1 MGP_AJ_G0024573.1 mouse_genomes_project 18 81515371 81951806 - MGP_AJ_P0050219 Zfp407 protein_coding protein_coding MGP_AJ_T0050220.1 MGP_AJ_G0024573.1 mouse_genomes_project 18 81597302 81984841 - MGP_AJ_P0050220 Zfp407 protein_coding protein_coding MGP_AJ_T0050221.1 MGP_AJ_G0024573.1 mouse_genomes_project 18 81670089 81804779 - Zfp407 protein_coding processed_transcript MGP_AJ_T0050222.1 MGP_AJ_G0024573.1 mouse_genomes_project 18 81822408 81827355 - Zfp407 protein_coding retained_intron MGP_AJ_T0050223.1 MGP_AJ_G0024573.1 mouse_genomes_project 18 81888695 81951756 - Zfp407 protein_coding processed_transcript MGP_AJ_T0050224.1 MGP_AJ_G0024573.1 mouse_genomes_project 18 81946289 81985062 - Zfp407 protein_coding processed_transcript MGP_AJ_T0001007.1 MGP_AJ_G0000938.1 mouse_genomes_project 18 52644503 52645496 - TEC TEC MGP_AJ_T0049467.1 MGP_AJ_G0024322.1 mouse_genomes_project 18 35105619 35115317 - Hdac3 protein_coding retained_intron MGP_AJ_T0049468.1 MGP_AJ_G0024322.1 mouse_genomes_project 18 35106747 35113832 - Hdac3 protein_coding retained_intron MGP_AJ_T0049469.1 MGP_AJ_G0024322.1 mouse_genomes_project 18 35106747 35124688 - MGP_AJ_P0049469 Hdac3 protein_coding protein_coding MGP_AJ_T0049470.1 MGP_AJ_G0024322.1 mouse_genomes_project 18 35106753 35124631 - Hdac3 protein_coding processed_transcript MGP_AJ_T0049726.1 MGP_AJ_G0024417.1 mouse_genomes_project 18 55064298 55132327 + MGP_AJ_P0049726 Slc12a2 protein_coding protein_coding MGP_AJ_T0049920.1 MGP_AJ_G0024485.1 mouse_genomes_project 18 64162232 64164974 - MGP_AJ_P0049920 Mc4r protein_coding protein_coding MGP_AJ_T0049908.1 MGP_AJ_G0024481.1 mouse_genomes_project 18 63255317 63270428 - MGP_AJ_P0049908 Cplx4 protein_coding protein_coding MGP_AJ_T0013336.1 MGP_AJ_G0011431.1 mouse_genomes_project 18 35907441 35907555 + processed_pseudogene processed_pseudogene MGP_AJ_T0049781.1 MGP_AJ_G0024438.1 mouse_genomes_project 18 58169120 58233458 + MGP_AJ_P0049781 Camk2a protein_coding protein_coding MGP_AJ_T0049782.1 MGP_AJ_G0024438.1 mouse_genomes_project 18 58169134 58187649 + Camk2a protein_coding retained_intron MGP_AJ_T0049783.1 MGP_AJ_G0024438.1 mouse_genomes_project 18 58169134 58231712 + MGP_AJ_P0049783 Camk2a protein_coding protein_coding MGP_AJ_T0049784.1 MGP_AJ_G0024438.1 mouse_genomes_project 18 58169227 58187667 + MGP_AJ_P0049784 Camk2a protein_coding protein_coding MGP_AJ_T0049785.1 MGP_AJ_G0024438.1 mouse_genomes_project 18 58170447 58200249 + MGP_AJ_P0049785 Camk2a protein_coding protein_coding MGP_AJ_T0049786.1 MGP_AJ_G0024438.1 mouse_genomes_project 18 58208157 58230176 + MGP_AJ_P0049786 Camk2a protein_coding protein_coding MGP_AJ_T0049787.1 MGP_AJ_G0024438.1 mouse_genomes_project 18 58208203 58231010 + MGP_AJ_P0049787 Camk2a protein_coding protein_coding MGP_AJ_T0049144.1 MGP_AJ_G0024177.1 mouse_genomes_project 18 28566281 28575889 - MGP_AJ_P0049144 Syt4 protein_coding protein_coding MGP_AJ_T0049675.1 MGP_AJ_G0024397.1 mouse_genomes_project 18 49830243 49832233 + MGP_AJ_P0049675 Gykl1 protein_coding protein_coding MGP_AJ_T0049942.1 MGP_AJ_G0024501.1 mouse_genomes_project 18 65665599 65690260 + MGP_AJ_P0049942 Rnmt protein_coding protein_coding MGP_AJ_T0049943.1 MGP_AJ_G0024501.1 mouse_genomes_project 18 65665636 65674662 + MGP_AJ_P0049943 Rnmt protein_coding protein_coding MGP_AJ_T0049944.1 MGP_AJ_G0024501.1 mouse_genomes_project 18 65665642 65680750 + Rnmt protein_coding retained_intron MGP_AJ_T0049945.1 MGP_AJ_G0024501.1 mouse_genomes_project 18 65665644 65687314 + MGP_AJ_P0049945 Rnmt protein_coding protein_coding MGP_AJ_T0049946.1 MGP_AJ_G0024501.1 mouse_genomes_project 18 65665666 65676927 + MGP_AJ_P0049946 Rnmt protein_coding protein_coding MGP_AJ_T0049947.1 MGP_AJ_G0024501.1 mouse_genomes_project 18 65670241 65671439 + MGP_AJ_P0049947 Rnmt protein_coding protein_coding MGP_AJ_T0049948.1 MGP_AJ_G0024501.1 mouse_genomes_project 18 65682855 65684609 + Rnmt protein_coding retained_intron MGP_AJ_T0049949.1 MGP_AJ_G0024501.1 mouse_genomes_project 18 65684361 65690259 + Rnmt protein_coding processed_transcript MGP_AJ_T0050150.1 MGP_AJ_G0024553.1 mouse_genomes_project 18 76074243 76436019 - MGP_AJ_P0050150 Setbp1 protein_coding protein_coding MGP_AJ_T0049927.1 MGP_AJ_G0024491.1 mouse_genomes_project 18 64735888 64781895 - MGP_AJ_P0049927 Afg3l2 protein_coding protein_coding MGP_AJ_T0048957.1 MGP_AJ_G0024108.1 mouse_genomes_project 18 6951558 7072201 - MGP_AJ_P0048957 Rock1 protein_coding protein_coding MGP_AJ_T0049051.1 MGP_AJ_G0024141.1 mouse_genomes_project 18 17286735 17333808 + MGP_AJ_P0049051 Dsg1c protein_coding unknown_likely_coding MGP_AJ_T0050015.1 MGP_AJ_G0024507.1 mouse_genomes_project 18 67363151 67517661 - MGP_AJ_P0050015 Rab27b protein_coding protein_coding MGP_AJ_T0050016.1 MGP_AJ_G0024507.1 mouse_genomes_project 18 67367676 67429693 - MGP_AJ_P0050016 Rab27b protein_coding protein_coding MGP_AJ_T0050017.1 MGP_AJ_G0024507.1 mouse_genomes_project 18 67367676 67429693 - MGP_AJ_P0050017 Rab27b protein_coding protein_coding MGP_AJ_T0050018.1 MGP_AJ_G0024507.1 mouse_genomes_project 18 67514219 67517630 - Rab27b protein_coding retained_intron MGP_AJ_T0050088.1 MGP_AJ_G0024534.1 mouse_genomes_project 18 73618251 73681087 + MGP_AJ_P0050088 Smad2 protein_coding protein_coding MGP_AJ_T0050089.1 MGP_AJ_G0024534.1 mouse_genomes_project 18 73618442 73681087 + MGP_AJ_P0050089 Smad2 protein_coding protein_coding MGP_AJ_T0050090.1 MGP_AJ_G0024534.1 mouse_genomes_project 18 73618596 73674809 + MGP_AJ_P0050090 Smad2 protein_coding protein_coding MGP_AJ_T0050091.1 MGP_AJ_G0024534.1 mouse_genomes_project 18 73638810 73678997 + MGP_AJ_P0050091 Smad2 protein_coding protein_coding MGP_AJ_T0050092.1 MGP_AJ_G0024534.1 mouse_genomes_project 18 73638810 73676195 + MGP_AJ_P0050092 Smad2 protein_coding protein_coding MGP_AJ_T0099688.1 MGP_AJ_G0037654.1 mouse_genomes_project 18 29949159 29949266 + Gm26378 snRNA snRNA MGP_AJ_T0050154.1 MGP_AJ_G0024557.1 mouse_genomes_project 18 77544660 77553071 - MGP_AJ_P0050154 Rbfa protein_coding protein_coding MGP_AJ_T0049373.1 MGP_AJ_G0024262.1 mouse_genomes_project 18 34122195 34357515 + MGP_AJ_P0049373 Pcdha3 protein_coding protein_coding MGP_AJ_T0049594.1 MGP_AJ_G0024368.1 mouse_genomes_project 18 41621556 42013518 - MGP_AJ_P0049594 Mcc protein_coding protein_coding MGP_AJ_T0049595.1 MGP_AJ_G0024368.1 mouse_genomes_project 18 41625746 41867584 - MGP_AJ_P0049595 Mcc protein_coding protein_coding MGP_AJ_T0049596.1 MGP_AJ_G0024368.1 mouse_genomes_project 18 41718356 41721017 - Mcc protein_coding retained_intron MGP_AJ_T0049597.1 MGP_AJ_G0024368.1 mouse_genomes_project 18 41863882 41867602 - Mcc protein_coding retained_intron MGP_AJ_T0049598.1 MGP_AJ_G0024368.1 mouse_genomes_project 18 41911237 41924427 - Mcc protein_coding processed_transcript MGP_AJ_T0049543.1 MGP_AJ_G0024340.1 mouse_genomes_project 18 39092138 39168198 - MGP_AJ_P0049543 Prelid2 protein_coding protein_coding MGP_AJ_T0013364.1 MGP_AJ_G0011459.1 mouse_genomes_project 18 86839040 86839365 - processed_pseudogene processed_pseudogene MGP_AJ_T0049549.1 MGP_AJ_G0024343.1 mouse_genomes_project 18 39387092 39387386 + MGP_AJ_P0049549 Gm5689 protein_coding protein_coding MGP_AJ_T0013339.1 MGP_AJ_G0011434.1 mouse_genomes_project 18 36545885 36546236 - processed_pseudogene processed_pseudogene MGP_AJ_T0010261.1 MGP_AJ_G0008383.1 mouse_genomes_project 18 58648705 58648771 - Mir378a miRNA miRNA MGP_AJ_T0013351.1 MGP_AJ_G0011446.1 mouse_genomes_project 18 50091181 50091738 + processed_pseudogene processed_pseudogene MGP_AJ_T0050061.1 MGP_AJ_G0024524.1 mouse_genomes_project 18 71642135 71723310 + MGP_AJ_P0050061 Cfap53 protein_coding protein_coding MGP_AJ_T0050062.1 MGP_AJ_G0024524.1 mouse_genomes_project 18 71642167 71723308 + MGP_AJ_P0050062 Cfap53 protein_coding nonsense_mediated_decay MGP_AJ_T0050063.1 MGP_AJ_G0024524.1 mouse_genomes_project 18 71711358 71723254 + Cfap53 protein_coding processed_transcript MGP_AJ_T0050207.1 MGP_AJ_G0024569.1 mouse_genomes_project 18 79983422 80084855 - MGP_AJ_P0050207 Zfp236 protein_coding protein_coding MGP_AJ_T0050208.1 MGP_AJ_G0024569.1 mouse_genomes_project 18 79983424 80074766 - MGP_AJ_P0050208 Zfp236 protein_coding unknown_likely_coding MGP_AJ_T0050209.1 MGP_AJ_G0024569.1 mouse_genomes_project 18 79985305 80007520 - MGP_AJ_P0050209 Zfp236 protein_coding nonsense_mediated_decay MGP_AJ_T0050210.1 MGP_AJ_G0024569.1 mouse_genomes_project 18 79986984 80084706 - MGP_AJ_P0050210 Zfp236 protein_coding protein_coding MGP_AJ_T0050211.1 MGP_AJ_G0024569.1 mouse_genomes_project 18 79986984 80084706 - MGP_AJ_P0050211 Zfp236 protein_coding nonsense_mediated_decay MGP_AJ_T0050212.1 MGP_AJ_G0024569.1 mouse_genomes_project 18 80029152 80030336 - Zfp236 protein_coding retained_intron MGP_AJ_T0050213.1 MGP_AJ_G0024569.1 mouse_genomes_project 18 80071880 80082968 - MGP_AJ_P0050213 Zfp236 protein_coding protein_coding MGP_AJ_T0007019.1 MGP_AJ_G0005767.1 mouse_genomes_project 18 29801065 29966591 - 4930455D15Rik lincRNA lincRNA MGP_AJ_T0049160.1 MGP_AJ_G0024190.1 mouse_genomes_project 18 29242356 29260001 - MGP_AJ_P0049160 Proc protein_coding protein_coding MGP_AJ_T0049058.1 MGP_AJ_G0024146.1 mouse_genomes_project 18 17806045 17806417 - MGP_AJ_P0049058 Gm10269 protein_coding protein_coding MGP_AJ_T0049774.1 MGP_AJ_G0024436.1 mouse_genomes_project 18 58051431 58088721 - MGP_AJ_P0049774 Tcof1 protein_coding protein_coding MGP_AJ_T0049775.1 MGP_AJ_G0024436.1 mouse_genomes_project 18 58051431 58088679 - MGP_AJ_P0049775 Tcof1 protein_coding protein_coding MGP_AJ_T0049776.1 MGP_AJ_G0024436.1 mouse_genomes_project 18 58054459 58088709 - MGP_AJ_P0049776 Tcof1 protein_coding nonsense_mediated_decay MGP_AJ_T0049777.1 MGP_AJ_G0024436.1 mouse_genomes_project 18 58056492 58088668 - MGP_AJ_P0049777 Tcof1 protein_coding protein_coding MGP_AJ_T0049778.1 MGP_AJ_G0024436.1 mouse_genomes_project 18 58066571 58067532 - Tcof1 protein_coding retained_intron MGP_AJ_T0049779.1 MGP_AJ_G0024436.1 mouse_genomes_project 18 58078282 58088196 - MGP_AJ_P0049779 Tcof1 protein_coding protein_coding MGP_AJ_T0049066.1 MGP_AJ_G0024151.1 mouse_genomes_project 18 18199881 18227919 + MGP_AJ_P0049066 Mep1b protein_coding protein_coding MGP_AJ_T0049540.1 MGP_AJ_G0024337.1 mouse_genomes_project 18 37426353 37440849 - MGP_AJ_P0049540 Yipf5 protein_coding protein_coding MGP_AJ_T0048983.1 MGP_AJ_G0024118.1 mouse_genomes_project 18 9133113 9162032 + MGP_AJ_P0048983 Riok3 protein_coding protein_coding MGP_AJ_T0049831.1 MGP_AJ_G0024459.1 mouse_genomes_project 18 59853893 59857738 - MGP_AJ_P0049831 Spink7 protein_coding protein_coding MGP_AJ_T0049703.1 MGP_AJ_G0024408.1 mouse_genomes_project 18 53721667 53748456 + MGP_AJ_P0049703 Phax protein_coding protein_coding MGP_AJ_T0049704.1 MGP_AJ_G0024408.1 mouse_genomes_project 18 53721817 53741571 + MGP_AJ_P0049704 Phax protein_coding protein_coding MGP_AJ_T0049705.1 MGP_AJ_G0024408.1 mouse_genomes_project 18 53733502 53748979 + MGP_AJ_P0049705 Phax protein_coding protein_coding MGP_AJ_T0050240.1 MGP_AJ_G0024579.1 mouse_genomes_project 18 82345477 82349708 - MGP_AJ_P0050240 Timm21 protein_coding protein_coding MGP_AJ_T0049627.1 MGP_AJ_G0024382.1 mouse_genomes_project 18 44137481 44273113 + MGP_AJ_P0049627 Commd10 protein_coding protein_coding MGP_AJ_T0049447.1 MGP_AJ_G0024317.1 mouse_genomes_project 18 34934356 35011794 + MGP_AJ_P0049447 Pcdhga12 protein_coding protein_coding MGP_AJ_T0049448.1 MGP_AJ_G0024317.1 mouse_genomes_project 18 34934585 34938949 + Pcdhga12 protein_coding retained_intron MGP_AJ_T0049545.1 MGP_AJ_G0024342.1 mouse_genomes_project 18 39259750 39372845 + MGP_AJ_P0049545 Sh3rf2 protein_coding protein_coding MGP_AJ_T0049546.1 MGP_AJ_G0024342.1 mouse_genomes_project 18 39259793 39372336 + MGP_AJ_P0049546 Sh3rf2 protein_coding protein_coding MGP_AJ_T0049547.1 MGP_AJ_G0024342.1 mouse_genomes_project 18 39355752 39370009 + Sh3rf2 protein_coding processed_transcript MGP_AJ_T0049548.1 MGP_AJ_G0024342.1 mouse_genomes_project 18 39355840 39367023 + Sh3rf2 protein_coding processed_transcript MGP_AJ_T0049741.1 MGP_AJ_G0024426.1 mouse_genomes_project 18 57484231 57490793 - MGP_AJ_P0049741 Gm4841 protein_coding protein_coding MGP_AJ_T0049114.1 MGP_AJ_G0024167.1 mouse_genomes_project 18 21712317 21744500 - MGP_AJ_P0049114 Slc39a6 protein_coding protein_coding MGP_AJ_T0049115.1 MGP_AJ_G0024167.1 mouse_genomes_project 18 21715386 21744198 - MGP_AJ_P0049115 Slc39a6 protein_coding protein_coding MGP_AJ_T0049116.1 MGP_AJ_G0024167.1 mouse_genomes_project 18 21737017 21740121 - Slc39a6 protein_coding retained_intron MGP_AJ_T0049117.1 MGP_AJ_G0024167.1 mouse_genomes_project 18 21742167 21743976 - MGP_AJ_P0049117 Slc39a6 protein_coding protein_coding MGP_AJ_T0010245.1 MGP_AJ_G0008367.1 mouse_genomes_project 18 35024502 35024558 - Mir6979 miRNA miRNA MGP_AJ_T0048859.1 MGP_AJ_G0024082.1 mouse_genomes_project 18 347522 355956 + MGP_AJ_P0048859 Bambi protein_coding protein_coding MGP_AJ_T0001010.1 MGP_AJ_G0000941.1 mouse_genomes_project 18 77659194 77660715 - TEC TEC MGP_AJ_T0049434.1 MGP_AJ_G0024308.1 mouse_genomes_project 18 34875365 35011794 + MGP_AJ_P0049434 Pcdhga6 protein_coding protein_coding MGP_AJ_T0048958.1 MGP_AJ_G0024109.1 mouse_genomes_project 18 7208553 7394804 + Greb1l protein_coding retained_intron MGP_AJ_T0048959.1 MGP_AJ_G0024109.1 mouse_genomes_project 18 7208555 7455576 + MGP_AJ_P0048959 Greb1l protein_coding protein_coding MGP_AJ_T0048960.1 MGP_AJ_G0024109.1 mouse_genomes_project 18 7349336 7429936 + MGP_AJ_P0048960 Greb1l protein_coding protein_coding MGP_AJ_T0048961.1 MGP_AJ_G0024109.1 mouse_genomes_project 18 7401251 7407357 + Greb1l protein_coding retained_intron MGP_AJ_T0048962.1 MGP_AJ_G0024109.1 mouse_genomes_project 18 7402559 7446380 + MGP_AJ_P0048962 Greb1l protein_coding nonsense_mediated_decay MGP_AJ_T0048963.1 MGP_AJ_G0024109.1 mouse_genomes_project 18 7446461 7451505 + Greb1l protein_coding processed_transcript MGP_AJ_T0049368.1 MGP_AJ_G0024259.1 mouse_genomes_project 18 33969117 33974943 + MGP_AJ_P0049368 Zmat2 protein_coding protein_coding MGP_AJ_T0003808.1 MGP_AJ_G0003417.1 mouse_genomes_project 18 34128741 34129134 - Gm38225 antisense antisense MGP_AJ_T0049612.1 MGP_AJ_G0024372.1 mouse_genomes_project 18 43402769 43445981 - MGP_AJ_P0049612 Pggt1b protein_coding protein_coding MGP_AJ_T0099708.1 MGP_AJ_G0037674.1 mouse_genomes_project 18 63200074 63200134 - Gm25150 snRNA snRNA MGP_AJ_T0049400.1 MGP_AJ_G0024280.1 mouse_genomes_project 18 34494875 34498591 + MGP_AJ_P0049400 Pcdhb4 protein_coding protein_coding MGP_AJ_T0007054.1 MGP_AJ_G0005794.1 mouse_genomes_project 18 80247991 80262632 + 4930445N18Rik lincRNA lincRNA MGP_AJ_T0007055.1 MGP_AJ_G0005794.1 mouse_genomes_project 18 80247994 80251260 + 4930445N18Rik lincRNA lincRNA MGP_AJ_T0049603.1 MGP_AJ_G0024370.1 mouse_genomes_project 18 42446492 42468030 + Kcnn2 protein_coding processed_transcript MGP_AJ_T0049604.1 MGP_AJ_G0024370.1 mouse_genomes_project 18 42446637 42849569 + MGP_AJ_P0049604 Kcnn2 protein_coding protein_coding MGP_AJ_T0049605.1 MGP_AJ_G0024370.1 mouse_genomes_project 18 42446637 42849710 + MGP_AJ_P0049605 Kcnn2 protein_coding protein_coding MGP_AJ_T0049606.1 MGP_AJ_G0024370.1 mouse_genomes_project 18 42718944 42834872 + Kcnn2 protein_coding retained_intron MGP_AJ_T0049607.1 MGP_AJ_G0024370.1 mouse_genomes_project 18 42719286 42752608 + Kcnn2 protein_coding retained_intron MGP_AJ_T0049608.1 MGP_AJ_G0024370.1 mouse_genomes_project 18 42719629 42839053 + Kcnn2 protein_coding processed_transcript MGP_AJ_T0049609.1 MGP_AJ_G0024370.1 mouse_genomes_project 18 42719629 42849568 + MGP_AJ_P0049609 Kcnn2 protein_coding protein_coding MGP_AJ_T0049119.1 MGP_AJ_G0024169.1 mouse_genomes_project 18 21795350 21842673 + MGP_AJ_P0049119 Mocos protein_coding protein_coding MGP_AJ_T0049471.1 MGP_AJ_G0024323.1 mouse_genomes_project 18 35124778 35128245 + MGP_AJ_P0049471 Rell2 protein_coding nonsense_mediated_decay MGP_AJ_T0049472.1 MGP_AJ_G0024323.1 mouse_genomes_project 18 35124838 35128245 + MGP_AJ_P0049472 Rell2 protein_coding nonsense_mediated_decay MGP_AJ_T0049473.1 MGP_AJ_G0024323.1 mouse_genomes_project 18 35125287 35127378 + MGP_AJ_P0049473 Rell2 protein_coding protein_coding MGP_AJ_T0049474.1 MGP_AJ_G0024323.1 mouse_genomes_project 18 35125303 35128872 + MGP_AJ_P0049474 Rell2 protein_coding protein_coding MGP_AJ_T0049475.1 MGP_AJ_G0024323.1 mouse_genomes_project 18 35125323 35128863 + MGP_AJ_P0049475 Rell2 protein_coding protein_coding MGP_AJ_T0049476.1 MGP_AJ_G0024323.1 mouse_genomes_project 18 35126392 35127739 + Rell2 protein_coding retained_intron MGP_AJ_T0049477.1 MGP_AJ_G0024323.1 mouse_genomes_project 18 35126433 35127869 + Rell2 protein_coding retained_intron MGP_AJ_T0010272.1 MGP_AJ_G0008394.1 mouse_genomes_project 18 78279133 78279229 - Gm25071 miRNA miRNA MGP_AJ_T0049171.1 MGP_AJ_G0024196.1 mouse_genomes_project 18 29966528 29995675 + MGP_AJ_P0049171 Wdr36 protein_coding protein_coding MGP_AJ_T0049172.1 MGP_AJ_G0024196.1 mouse_genomes_project 18 29966528 29995745 + MGP_AJ_P0049172 Wdr36 protein_coding protein_coding MGP_AJ_T0049558.1 MGP_AJ_G0024350.1 mouse_genomes_project 18 39855595 40121335 - Ppp2r2b protein_coding processed_transcript MGP_AJ_T0049559.1 MGP_AJ_G0024350.1 mouse_genomes_project 18 39864155 40121126 - MGP_AJ_P0049559 Ppp2r2b protein_coding protein_coding MGP_AJ_T0049560.1 MGP_AJ_G0024350.1 mouse_genomes_project 18 39864155 40276210 - MGP_AJ_P0049560 Ppp2r2b protein_coding protein_coding MGP_AJ_T0049561.1 MGP_AJ_G0024350.1 mouse_genomes_project 18 39864180 40121475 - MGP_AJ_P0049561 Ppp2r2b protein_coding protein_coding MGP_AJ_T0049562.1 MGP_AJ_G0024350.1 mouse_genomes_project 18 39960348 40161756 - Ppp2r2b protein_coding processed_transcript MGP_AJ_T0049563.1 MGP_AJ_G0024350.1 mouse_genomes_project 18 39980901 40120647 - Ppp2r2b protein_coding processed_transcript MGP_AJ_T0049360.1 MGP_AJ_G0024257.1 mouse_genomes_project 18 33940566 33958382 - MGP_AJ_P0049360 Hars protein_coding protein_coding MGP_AJ_T0049531.1 MGP_AJ_G0024335.1 mouse_genomes_project 18 36617753 36696904 - MGP_AJ_P0049531 Nr3c1 protein_coding protein_coding MGP_AJ_T0049532.1 MGP_AJ_G0024335.1 mouse_genomes_project 18 36617755 36693486 - MGP_AJ_P0049532 Nr3c1 protein_coding protein_coding MGP_AJ_T0049533.1 MGP_AJ_G0024335.1 mouse_genomes_project 18 36619196 36696077 - MGP_AJ_P0049533 Nr3c1 protein_coding protein_coding MGP_AJ_T0049534.1 MGP_AJ_G0024335.1 mouse_genomes_project 18 36621691 36693473 - MGP_AJ_P0049534 Nr3c1 protein_coding protein_coding MGP_AJ_T0049535.1 MGP_AJ_G0024335.1 mouse_genomes_project 18 36631638 36696119 - MGP_AJ_P0049535 Nr3c1 protein_coding protein_coding MGP_AJ_T0049536.1 MGP_AJ_G0024335.1 mouse_genomes_project 18 36693111 36697539 - MGP_AJ_P0049536 Nr3c1 protein_coding protein_coding MGP_AJ_T0049537.1 MGP_AJ_G0024335.1 mouse_genomes_project 18 36693326 36695514 - MGP_AJ_P0049537 Nr3c1 protein_coding protein_coding MGP_AJ_T0049538.1 MGP_AJ_G0024335.1 mouse_genomes_project 18 36693400 36697537 - MGP_AJ_P0049538 Nr3c1 protein_coding protein_coding MGP_AJ_T0049897.1 MGP_AJ_G0024478.1 mouse_genomes_project 18 63091710 63108881 + MGP_AJ_P0049897 Sec11c protein_coding protein_coding MGP_AJ_T0049898.1 MGP_AJ_G0024478.1 mouse_genomes_project 18 63091711 63108872 + MGP_AJ_P0049898 Sec11c protein_coding nonsense_mediated_decay MGP_AJ_T0049899.1 MGP_AJ_G0024478.1 mouse_genomes_project 18 63091733 63103944 + MGP_AJ_P0049899 Sec11c protein_coding protein_coding MGP_AJ_T0049900.1 MGP_AJ_G0024478.1 mouse_genomes_project 18 63091764 63108873 + Sec11c protein_coding retained_intron MGP_AJ_T0049901.1 MGP_AJ_G0024478.1 mouse_genomes_project 18 63092463 63103994 + Sec11c protein_coding processed_transcript MGP_AJ_T0049902.1 MGP_AJ_G0024478.1 mouse_genomes_project 18 63097750 63108876 + Sec11c protein_coding processed_transcript MGP_AJ_T0049903.1 MGP_AJ_G0024478.1 mouse_genomes_project 18 63105229 63108876 + Sec11c protein_coding processed_transcript MGP_AJ_T0013345.1 MGP_AJ_G0011440.1 mouse_genomes_project 18 44592403 44593295 - processed_pseudogene processed_pseudogene MGP_AJ_T0050225.1 MGP_AJ_G0024574.1 mouse_genomes_project 18 81999354 82039810 - MGP_AJ_P0050225 Cndp1 protein_coding protein_coding MGP_AJ_T0050226.1 MGP_AJ_G0024574.1 mouse_genomes_project 18 82017349 82039772 - Cndp1 protein_coding retained_intron MGP_AJ_T0050227.1 MGP_AJ_G0024574.1 mouse_genomes_project 18 82019517 82039672 - Cndp1 protein_coding retained_intron MGP_AJ_T0007049.1 MGP_AJ_G0005789.1 mouse_genomes_project 18 72892852 72901222 + Gm10532 lincRNA lincRNA MGP_AJ_T0013355.1 MGP_AJ_G0011450.1 mouse_genomes_project 18 53119871 53120877 + processed_pseudogene processed_pseudogene MGP_AJ_T0050097.1 MGP_AJ_G0024537.1 mouse_genomes_project 18 74257876 74299546 + MGP_AJ_P0050097 Hdhd2 protein_coding nonsense_mediated_decay MGP_AJ_T0050099.1 MGP_AJ_G0024537.1 mouse_genomes_project 18 74271855 74290184 + MGP_AJ_P0050099 Hdhd2 protein_coding protein_coding MGP_AJ_T0050100.1 MGP_AJ_G0024537.1 mouse_genomes_project 18 74271855 74300268 + MGP_AJ_P0050100 Hdhd2 protein_coding protein_coding MGP_AJ_T0050101.1 MGP_AJ_G0024537.1 mouse_genomes_project 18 74271866 74299546 + MGP_AJ_P0050101 Hdhd2 protein_coding protein_coding MGP_AJ_T0050102.1 MGP_AJ_G0024537.1 mouse_genomes_project 18 74271866 74290184 + MGP_AJ_P0050102 Hdhd2 protein_coding protein_coding MGP_AJ_T0050103.1 MGP_AJ_G0024537.1 mouse_genomes_project 18 74271891 74284630 + MGP_AJ_P0050103 Hdhd2 protein_coding protein_coding MGP_AJ_T0050104.1 MGP_AJ_G0024537.1 mouse_genomes_project 18 74272124 74282792 + MGP_AJ_P0050104 Hdhd2 protein_coding protein_coding MGP_AJ_T0050105.1 MGP_AJ_G0024537.1 mouse_genomes_project 18 74272124 74300999 + MGP_AJ_P0050105 Hdhd2 protein_coding protein_coding MGP_AJ_T0050106.1 MGP_AJ_G0024537.1 mouse_genomes_project 18 74272158 74300268 + MGP_AJ_P0050106 Hdhd2 protein_coding protein_coding MGP_AJ_T0050107.1 MGP_AJ_G0024537.1 mouse_genomes_project 18 74272177 74300999 + MGP_AJ_P0050107 Hdhd2 protein_coding protein_coding MGP_AJ_T0049864.1 MGP_AJ_G0024469.1 mouse_genomes_project 18 61613641 61671428 + MGP_AJ_P0049864 Onecut2 protein_coding protein_coding MGP_AJ_T0049865.1 MGP_AJ_G0024469.1 mouse_genomes_project 18 61613641 61671430 + MGP_AJ_P0049865 Onecut2 protein_coding protein_coding MGP_AJ_T0048929.1 MGP_AJ_G0024097.1 mouse_genomes_project 18 4270369 4549670 - MGP_AJ_P0048929 Mpp7 protein_coding protein_coding MGP_AJ_T0098827.1 MGP_AJ_G0036811.1 mouse_genomes_project 18 72138684 72138763 - Scarna17 scaRNA scaRNA MGP_AJ_T0007035.1 MGP_AJ_G0005779.1 mouse_genomes_project 18 52118619 52124851 + Gm26742 lincRNA lincRNA MGP_AJ_T0049422.1 MGP_AJ_G0024300.1 mouse_genomes_project 18 34803808 34807523 - MGP_AJ_P0049422 Taf7 protein_coding protein_coding MGP_AJ_T0049573.1 MGP_AJ_G0024355.1 mouse_genomes_project 18 40991706 40994818 + MGP_AJ_P0049573 Scgb3a2 protein_coding protein_coding MGP_AJ_T0049574.1 MGP_AJ_G0024355.1 mouse_genomes_project 18 40991744 40994818 + MGP_AJ_P0049574 Scgb3a2 protein_coding protein_coding MGP_AJ_T0049575.1 MGP_AJ_G0024355.1 mouse_genomes_project 18 40991744 40994818 + MGP_AJ_P0049575 Scgb3a2 protein_coding protein_coding MGP_AJ_T0050234.1 MGP_AJ_G0024577.1 mouse_genomes_project 18 82243900 82275858 + MGP_AJ_P0050234 Cyb5a protein_coding protein_coding MGP_AJ_T0050235.1 MGP_AJ_G0024577.1 mouse_genomes_project 18 82243939 82275049 + MGP_AJ_P0050235 Cyb5a protein_coding nonsense_mediated_decay MGP_AJ_T0050236.1 MGP_AJ_G0024577.1 mouse_genomes_project 18 82243969 82269039 + Cyb5a protein_coding retained_intron MGP_AJ_T0050237.1 MGP_AJ_G0024577.1 mouse_genomes_project 18 82244441 82275319 + MGP_AJ_P0050237 Cyb5a protein_coding protein_coding MGP_AJ_T0050238.1 MGP_AJ_G0024577.1 mouse_genomes_project 18 82273057 82275321 + Cyb5a protein_coding retained_intron MGP_AJ_T0049872.1 MGP_AJ_G0024474.1 mouse_genomes_project 18 62561050 62689135 - MGP_AJ_P0049872 Alpk2 protein_coding protein_coding MGP_AJ_T0049873.1 MGP_AJ_G0024474.1 mouse_genomes_project 18 62570255 62644995 - MGP_AJ_P0049873 Alpk2 protein_coding protein_coding MGP_AJ_T0049874.1 MGP_AJ_G0024474.1 mouse_genomes_project 18 62658447 62689136 - Alpk2 protein_coding processed_transcript MGP_AJ_T0050076.1 MGP_AJ_G0024527.1 mouse_genomes_project 18 72299963 72323643 - MGP_AJ_P0050076 Lipg protein_coding protein_coding MGP_AJ_T0100946.1 MGP_AJ_G0038912.1 mouse_genomes_project 18 14096617 14096747 + Gm22470 snoRNA snoRNA MGP_AJ_T0100942.1 MGP_AJ_G0038908.1 mouse_genomes_project 18 6498524 6498652 + Gm22765 snoRNA snoRNA MGP_AJ_T0049150.1 MGP_AJ_G0024182.1 mouse_genomes_project 18 28913886 28921383 + MGP_AJ_P0049150 Polr2d protein_coding protein_coding MGP_AJ_T0049816.1 MGP_AJ_G0024449.1 mouse_genomes_project 18 58944788 58949413 + MGP_AJ_P0049816 Il17b protein_coding protein_coding MGP_AJ_T0049489.1 MGP_AJ_G0024326.1 mouse_genomes_project 18 35357050 35383184 - MGP_AJ_P0049489 Pcdh1 protein_coding protein_coding MGP_AJ_T0049490.1 MGP_AJ_G0024326.1 mouse_genomes_project 18 35360023 35374302 - MGP_AJ_P0049490 Pcdh1 protein_coding protein_coding MGP_AJ_T0049491.1 MGP_AJ_G0024326.1 mouse_genomes_project 18 35367828 35380898 - MGP_AJ_P0049491 Pcdh1 protein_coding protein_coding MGP_AJ_T0049492.1 MGP_AJ_G0024326.1 mouse_genomes_project 18 35367828 35383108 - MGP_AJ_P0049492 Pcdh1 protein_coding protein_coding MGP_AJ_T0049493.1 MGP_AJ_G0024326.1 mouse_genomes_project 18 35374582 35381690 - MGP_AJ_P0049493 Pcdh1 protein_coding protein_coding MGP_AJ_T0049494.1 MGP_AJ_G0024326.1 mouse_genomes_project 18 35374582 35374979 - MGP_AJ_P0049494 Pcdh1 protein_coding protein_coding MGP_AJ_T0050123.1 MGP_AJ_G0024542.1 mouse_genomes_project 18 74632273 74790320 + MGP_AJ_P0050123 Loxhd1 protein_coding protein_coding MGP_AJ_T0050124.1 MGP_AJ_G0024542.1 mouse_genomes_project 18 74657421 74730496 + MGP_AJ_P0050124 Loxhd1 protein_coding protein_coding MGP_AJ_T0050125.1 MGP_AJ_G0024542.1 mouse_genomes_project 18 74680860 74758819 + MGP_AJ_P0050125 Loxhd1 protein_coding protein_coding MGP_AJ_T0050126.1 MGP_AJ_G0024542.1 mouse_genomes_project 18 74723248 74790404 + MGP_AJ_P0050126 Loxhd1 protein_coding protein_coding MGP_AJ_T0050127.1 MGP_AJ_G0024542.1 mouse_genomes_project 18 74756855 74789949 + MGP_AJ_P0050127 Loxhd1 protein_coding protein_coding MGP_AJ_T0049034.1 MGP_AJ_G0024132.1 mouse_genomes_project 18 11822972 11943793 + MGP_AJ_P0049034 Taf4b protein_coding protein_coding MGP_AJ_T0049035.1 MGP_AJ_G0024132.1 mouse_genomes_project 18 11823394 11941562 + MGP_AJ_P0049035 Taf4b protein_coding unknown_likely_coding MGP_AJ_T0003800.1 MGP_AJ_G0003412.1 mouse_genomes_project 18 17732470 17788720 - Gm16090 antisense antisense MGP_AJ_T0049121.1 MGP_AJ_G0024171.1 mouse_genomes_project 18 21850568 22281123 + MGP_AJ_P0049121 Fhod3 protein_coding protein_coding MGP_AJ_T0049542.1 MGP_AJ_G0024339.1 mouse_genomes_project 18 37479445 37763088 + MGP_AJ_P0049542 Kctd16 protein_coding protein_coding MGP_AJ_T0049344.1 MGP_AJ_G0024249.1 mouse_genomes_project 18 33849635 33855454 + MGP_AJ_P0049344 Slc35a4 protein_coding protein_coding MGP_AJ_T0049345.1 MGP_AJ_G0024249.1 mouse_genomes_project 18 33849999 33855446 + MGP_AJ_P0049345 Slc35a4 protein_coding protein_coding MGP_AJ_T0049346.1 MGP_AJ_G0024249.1 mouse_genomes_project 18 33850003 33852132 + Slc35a4 protein_coding processed_transcript MGP_AJ_T0049347.1 MGP_AJ_G0024249.1 mouse_genomes_project 18 33850012 33851389 + Slc35a4 protein_coding processed_transcript MGP_AJ_T0049348.1 MGP_AJ_G0024249.1 mouse_genomes_project 18 33850012 33855451 + MGP_AJ_P0049348 Slc35a4 protein_coding protein_coding MGP_AJ_T0049349.1 MGP_AJ_G0024249.1 mouse_genomes_project 18 33850029 33852155 + MGP_AJ_P0049349 Slc35a4 protein_coding protein_coding MGP_AJ_T0010265.1 MGP_AJ_G0008387.1 mouse_genomes_project 18 63521775 63521845 - Mir694 miRNA miRNA MGP_AJ_T0049622.1 MGP_AJ_G0024378.1 mouse_genomes_project 18 43892856 43910621 - MGP_AJ_P0049622 Cdo1 protein_coding protein_coding MGP_AJ_T0049146.1 MGP_AJ_G0024179.1 mouse_genomes_project 18 28735007 28736247 + MGP_AJ_P0049146 B930094E09Rik protein_coding protein_coding MGP_AJ_T0049668.1 MGP_AJ_G0024392.1 mouse_genomes_project 18 49478097 49479548 + MGP_AJ_P0049668 Ftmt protein_coding protein_coding MGP_AJ_T0011449.1 MGP_AJ_G0009571.1 mouse_genomes_project 18 18430398 18430508 + Gm24372 misc_RNA misc_RNA MGP_AJ_T0049413.1 MGP_AJ_G0024291.1 mouse_genomes_project 18 34649448 34652365 + MGP_AJ_P0049413 Pcdhb15 protein_coding protein_coding MGP_AJ_T0049002.1 MGP_AJ_G0024122.1 mouse_genomes_project 18 9338013 9588339 + MGP_AJ_P0049002 Lama3 protein_coding protein_coding MGP_AJ_T0049003.1 MGP_AJ_G0024122.1 mouse_genomes_project 18 9338218 9587989 + MGP_AJ_P0049003 Lama3 protein_coding unknown_likely_coding MGP_AJ_T0049004.1 MGP_AJ_G0024122.1 mouse_genomes_project 18 9509322 9588339 + MGP_AJ_P0049004 Lama3 protein_coding protein_coding MGP_AJ_T0007047.1 MGP_AJ_G0005787.1 mouse_genomes_project 18 65117851 65118997 - Gm26910 lincRNA lincRNA MGP_AJ_T0049691.1 MGP_AJ_G0024404.1 mouse_genomes_project 18 51000805 51088221 + MGP_AJ_P0049691 Csnk1g3 protein_coding protein_coding MGP_AJ_T0050247.1 MGP_AJ_G0024582.1 mouse_genomes_project 18 85979279 86073425 - protein_coding processed_transcript MGP_AJ_T0050248.1 MGP_AJ_G0024582.1 mouse_genomes_project 18 85982750 86211943 - protein_coding processed_transcript MGP_AJ_T0050249.1 MGP_AJ_G0024582.1 mouse_genomes_project 18 86178821 86211926 - MGP_AJ_P0050249 protein_coding protein_coding MGP_AJ_T0050250.1 MGP_AJ_G0024582.1 mouse_genomes_project 18 86181826 86211820 - MGP_AJ_P0050250 protein_coding protein_coding MGP_AJ_T0050251.1 MGP_AJ_G0024582.1 mouse_genomes_project 18 86186855 86204363 - MGP_AJ_P0050251 protein_coding protein_coding MGP_AJ_T0050252.1 MGP_AJ_G0024582.1 mouse_genomes_project 18 86186855 86211956 - MGP_AJ_P0050252 protein_coding protein_coding MGP_AJ_T0050117.1 MGP_AJ_G0024539.1 mouse_genomes_project 18 74392825 74489495 + MGP_AJ_P0050117 Pias2 protein_coding protein_coding MGP_AJ_T0050118.1 MGP_AJ_G0024539.1 mouse_genomes_project 18 74393297 74489495 + MGP_AJ_P0050118 Pias2 protein_coding protein_coding MGP_AJ_T0050119.1 MGP_AJ_G0024539.1 mouse_genomes_project 18 74393297 74480726 + MGP_AJ_P0050119 Pias2 protein_coding protein_coding MGP_AJ_T0049053.1 MGP_AJ_G0024143.1 mouse_genomes_project 18 17632322 17665671 + MGP_AJ_P0049053 Dsg3 protein_coding protein_coding MGP_AJ_T0011443.1 MGP_AJ_G0009565.1 mouse_genomes_project 18 721096 721419 + Gm24632 misc_RNA misc_RNA MGP_AJ_T0100963.1 MGP_AJ_G0038929.1 mouse_genomes_project 18 53349948 53350083 + Gm23555 snoRNA snoRNA MGP_AJ_T0098635.1 MGP_AJ_G0036619.1 mouse_genomes_project 18 66550986 66551120 - Gm23536 rRNA rRNA MGP_AJ_T0050228.1 MGP_AJ_G0024575.1 mouse_genomes_project 18 82058194 82076917 - MGP_AJ_P0050228 Cndp2 protein_coding protein_coding MGP_AJ_T0050229.1 MGP_AJ_G0024575.1 mouse_genomes_project 18 82058194 82073280 - MGP_AJ_P0050229 Cndp2 protein_coding protein_coding MGP_AJ_T0049866.1 MGP_AJ_G0024470.1 mouse_genomes_project 18 61730870 61762986 - MGP_AJ_P0049866 Fech protein_coding protein_coding MGP_AJ_T0049718.1 MGP_AJ_G0024413.1 mouse_genomes_project 18 54311006 54471188 + MGP_AJ_P0049718 Megf10 protein_coding protein_coding MGP_AJ_T0049719.1 MGP_AJ_G0024413.1 mouse_genomes_project 18 54321038 54466443 + MGP_AJ_P0049719 Megf10 protein_coding protein_coding MGP_AJ_T0101756.1 MGP_AJ_G0039684.1 mouse_genomes_project 18 34248650 34250392 + transcribed_processed_pseudogene processed_transcript MGP_AJ_T0101757.1 MGP_AJ_G0039684.1 mouse_genomes_project 18 34250155 34251108 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0049588.1 MGP_AJ_G0024364.1 mouse_genomes_project 18 41416715 41421453 + MGP_AJ_P0049588 Gm10542 protein_coding protein_coding MGP_AJ_T0001003.1 MGP_AJ_G0000934.1 mouse_genomes_project 18 43273739 43274317 - TEC TEC MGP_AJ_T0049686.1 MGP_AJ_G0024401.1 mouse_genomes_project 18 50546878 50558580 - MGP_AJ_P0049686 Ppic protein_coding protein_coding MGP_AJ_T0010234.1 MGP_AJ_G0008356.1 mouse_genomes_project 18 7673371 7673439 - Mir133a-1 miRNA miRNA MGP_AJ_T0049236.1 MGP_AJ_G0024218.1 mouse_genomes_project 18 31957161 31964752 + MGP_AJ_P0049236 Reep2 protein_coding protein_coding MGP_AJ_T0049407.1 MGP_AJ_G0024285.1 mouse_genomes_project 18 34573232 34576287 + MGP_AJ_P0049407 Pcdhb9 protein_coding protein_coding MGP_AJ_T0049789.1 MGP_AJ_G0024440.1 mouse_genomes_project 18 58265092 58282469 - MGP_AJ_P0049789 Cdx1 protein_coding protein_coding MGP_AJ_T0049411.1 MGP_AJ_G0024289.1 mouse_genomes_project 18 34615749 34619459 + MGP_AJ_P0049411 Pcdhb13 protein_coding protein_coding MGP_AJ_T0049478.1 MGP_AJ_G0024324.1 mouse_genomes_project 18 35127130 35130169 - Fchsd1 protein_coding retained_intron MGP_AJ_T0049479.1 MGP_AJ_G0024324.1 mouse_genomes_project 18 35127133 35139472 - MGP_AJ_P0049479 Fchsd1 protein_coding protein_coding MGP_AJ_T0049480.1 MGP_AJ_G0024324.1 mouse_genomes_project 18 35132661 35133759 - Fchsd1 protein_coding retained_intron MGP_AJ_T0049481.1 MGP_AJ_G0024324.1 mouse_genomes_project 18 35135355 35139467 - MGP_AJ_P0049481 Fchsd1 protein_coding protein_coding MGP_AJ_T0049482.1 MGP_AJ_G0024324.1 mouse_genomes_project 18 35135393 35137447 - Fchsd1 protein_coding retained_intron MGP_AJ_T0049483.1 MGP_AJ_G0024324.1 mouse_genomes_project 18 35137315 35137750 - Fchsd1 protein_coding retained_intron MGP_AJ_T0049484.1 MGP_AJ_G0024324.1 mouse_genomes_project 18 35137336 35139467 - MGP_AJ_P0049484 Fchsd1 protein_coding protein_coding MGP_AJ_T0049485.1 MGP_AJ_G0024324.1 mouse_genomes_project 18 35137337 35139455 - Fchsd1 protein_coding retained_intron MGP_AJ_T0049486.1 MGP_AJ_G0024324.1 mouse_genomes_project 18 35137502 35139467 - MGP_AJ_P0049486 Fchsd1 protein_coding nonsense_mediated_decay MGP_AJ_T0049487.1 MGP_AJ_G0024324.1 mouse_genomes_project 18 35137530 35139226 - Fchsd1 protein_coding retained_intron MGP_AJ_T0049440.1 MGP_AJ_G0024312.1 mouse_genomes_project 18 34899145 35011794 + MGP_AJ_P0049440 Pcdhgb5 protein_coding protein_coding MGP_AJ_T0049441.1 MGP_AJ_G0024312.1 mouse_genomes_project 18 34899190 34903760 + Pcdhgb5 protein_coding retained_intron MGP_AJ_T0049614.1 MGP_AJ_G0024374.1 mouse_genomes_project 18 43669350 43695920 - MGP_AJ_P0049614 Fem1c protein_coding protein_coding MGP_AJ_T0049122.1 MGP_AJ_G0024172.1 mouse_genomes_project 18 22274913 22316023 - MGP_AJ_P0049122 Tpgs2 protein_coding protein_coding MGP_AJ_T0049123.1 MGP_AJ_G0024172.1 mouse_genomes_project 18 22283665 22316336 - MGP_AJ_P0049123 Tpgs2 protein_coding protein_coding MGP_AJ_T0049505.1 MGP_AJ_G0024332.1 mouse_genomes_project 18 35774769 35789759 - MGP_AJ_P0049505 Spry4 protein_coding protein_coding MGP_AJ_T0049412.1 MGP_AJ_G0024290.1 mouse_genomes_project 18 34620905 34629765 + MGP_AJ_P0049412 Pcdhb14 protein_coding protein_coding MGP_AJ_T0011444.1 MGP_AJ_G0009566.1 mouse_genomes_project 18 9971296 9971603 + Gm26407 misc_RNA misc_RNA MGP_AJ_T0048883.1 MGP_AJ_G0024088.1 mouse_genomes_project 18 2091571 2215888 - MGP_AJ_P0048883 Zfp438 protein_coding protein_coding MGP_AJ_T0049388.1 MGP_AJ_G0024273.1 mouse_genomes_project 18 34188409 34191732 + Pcdha11 protein_coding retained_intron MGP_AJ_T0049389.1 MGP_AJ_G0024273.1 mouse_genomes_project 18 34188411 34330553 + Pcdha11 protein_coding retained_intron MGP_AJ_T0049390.1 MGP_AJ_G0024273.1 mouse_genomes_project 18 34188449 34357515 + MGP_AJ_P0049390 Pcdha11 protein_coding protein_coding MGP_AJ_T0049391.1 MGP_AJ_G0024273.1 mouse_genomes_project 18 34188529 34357246 + MGP_AJ_P0049391 Pcdha11 protein_coding protein_coding MGP_AJ_T0049392.1 MGP_AJ_G0024273.1 mouse_genomes_project 18 34189949 34355073 + MGP_AJ_P0049392 Pcdha11 protein_coding protein_coding MGP_AJ_T0010237.1 MGP_AJ_G0008359.1 mouse_genomes_project 18 8841397 8841475 - Mir1901 miRNA miRNA MGP_AJ_T0050037.1 MGP_AJ_G0024514.1 mouse_genomes_project 18 70934796 70954308 + MGP_AJ_P0050037 Mex3c protein_coding protein_coding MGP_AJ_T0001002.1 MGP_AJ_G0000933.1 mouse_genomes_project 18 41336012 41336185 + TEC TEC MGP_AJ_T0050045.1 MGP_AJ_G0024517.1 mouse_genomes_project 18 71123268 71168935 - MGP_AJ_P0050045 Me2 protein_coding protein_coding MGP_AJ_T0049925.1 MGP_AJ_G0024489.1 mouse_genomes_project 18 64672325 64697713 + MGP_AJ_P0049925 Cidea protein_coding protein_coding MGP_AJ_T0099682.1 MGP_AJ_G0037648.1 mouse_genomes_project 18 7038352 7038516 - Gm26244 snRNA snRNA MGP_AJ_T0049828.1 MGP_AJ_G0024456.1 mouse_genomes_project 18 59439427 59443712 + MGP_AJ_P0049828 Gm9949 protein_coding protein_coding MGP_AJ_T0049353.1 MGP_AJ_G0024253.1 mouse_genomes_project 18 33916397 33918593 - MGP_AJ_P0049353 Ndufa2 protein_coding protein_coding MGP_AJ_T0001008.1 MGP_AJ_G0000939.1 mouse_genomes_project 18 59193887 59194125 - TEC TEC MGP_AJ_T0049806.1 MGP_AJ_G0024448.1 mouse_genomes_project 18 58812252 58846969 + MGP_AJ_P0049806 Csnk1a1 protein_coding protein_coding MGP_AJ_T0049807.1 MGP_AJ_G0024448.1 mouse_genomes_project 18 58812291 58845218 + MGP_AJ_P0049807 Csnk1a1 protein_coding protein_coding MGP_AJ_T0049808.1 MGP_AJ_G0024448.1 mouse_genomes_project 18 58812296 58839066 + MGP_AJ_P0049808 Csnk1a1 protein_coding protein_coding MGP_AJ_T0049809.1 MGP_AJ_G0024448.1 mouse_genomes_project 18 58812296 58842555 + MGP_AJ_P0049809 Csnk1a1 protein_coding protein_coding MGP_AJ_T0049810.1 MGP_AJ_G0024448.1 mouse_genomes_project 18 58812306 58839212 + MGP_AJ_P0049810 Csnk1a1 protein_coding protein_coding MGP_AJ_T0049811.1 MGP_AJ_G0024448.1 mouse_genomes_project 18 58812313 58815217 + Csnk1a1 protein_coding retained_intron MGP_AJ_T0049812.1 MGP_AJ_G0024448.1 mouse_genomes_project 18 58812317 58845096 + MGP_AJ_P0049812 Csnk1a1 protein_coding protein_coding MGP_AJ_T0049813.1 MGP_AJ_G0024448.1 mouse_genomes_project 18 58812666 58844445 + MGP_AJ_P0049813 Csnk1a1 protein_coding protein_coding MGP_AJ_T0049814.1 MGP_AJ_G0024448.1 mouse_genomes_project 18 58832471 58839068 + MGP_AJ_P0049814 Csnk1a1 protein_coding protein_coding MGP_AJ_T0049815.1 MGP_AJ_G0024448.1 mouse_genomes_project 18 58839765 58843423 + Csnk1a1 protein_coding processed_transcript MGP_AJ_T0049429.1 MGP_AJ_G0024305.1 mouse_genomes_project 18 34849510 35011794 + MGP_AJ_P0049429 Pcdhga4 protein_coding protein_coding MGP_AJ_T0049430.1 MGP_AJ_G0024305.1 mouse_genomes_project 18 34851184 34852080 + MGP_AJ_P0049430 Pcdhga4 protein_coding protein_coding MGP_AJ_T0013352.1 MGP_AJ_G0011447.1 mouse_genomes_project 18 51115630 51118039 + processed_pseudogene processed_pseudogene MGP_AJ_T0007038.1 MGP_AJ_G0005781.1 mouse_genomes_project 18 55404311 55416854 + Gm26507 lincRNA lincRNA MGP_AJ_T0049156.1 MGP_AJ_G0024187.1 mouse_genomes_project 18 29070709 29077349 - MGP_AJ_P0049156 Gpr17 protein_coding protein_coding MGP_AJ_T0049279.1 MGP_AJ_G0024229.1 mouse_genomes_project 18 32753412 32770540 - MGP_AJ_P0049279 Slc23a1 protein_coding protein_coding MGP_AJ_T0049280.1 MGP_AJ_G0024229.1 mouse_genomes_project 18 32762672 32770492 - MGP_AJ_P0049280 Slc23a1 protein_coding nonsense_mediated_decay MGP_AJ_T0049281.1 MGP_AJ_G0024229.1 mouse_genomes_project 18 32763368 32765905 - Slc23a1 protein_coding processed_transcript MGP_AJ_T0049282.1 MGP_AJ_G0024229.1 mouse_genomes_project 18 32766122 32770532 - Slc23a1 protein_coding processed_transcript MGP_AJ_T0048949.1 MGP_AJ_G0024106.1 mouse_genomes_project 18 6839453 6876626 + MGP_AJ_P0048949 Thoc1 protein_coding protein_coding MGP_AJ_T0007033.1 MGP_AJ_G0005777.1 mouse_genomes_project 18 46962309 46976851 - 1700065O20Rik lincRNA lincRNA MGP_AJ_T0049838.1 MGP_AJ_G0024463.1 mouse_genomes_project 18 60199605 60230951 + MGP_AJ_P0049838 Apcdd1 protein_coding protein_coding MGP_AJ_T0049839.1 MGP_AJ_G0024463.1 mouse_genomes_project 18 60199607 60230220 + MGP_AJ_P0049839 Apcdd1 protein_coding protein_coding MGP_AJ_T0049858.1 MGP_AJ_G0024466.1 mouse_genomes_project 18 60939365 60969999 - MGP_AJ_P0049858 Txnl1 protein_coding protein_coding MGP_AJ_T0049414.1 MGP_AJ_G0024292.1 mouse_genomes_project 18 34653836 34659189 + MGP_AJ_P0049414 Pcdhb16 protein_coding protein_coding MGP_AJ_T0049722.1 MGP_AJ_G0024416.1 mouse_genomes_project 18 54716794 54923374 + MGP_AJ_P0049722 1700011I03Rik protein_coding protein_coding MGP_AJ_T0049723.1 MGP_AJ_G0024416.1 mouse_genomes_project 18 54716843 54923374 + MGP_AJ_P0049723 1700011I03Rik protein_coding protein_coding MGP_AJ_T0049724.1 MGP_AJ_G0024416.1 mouse_genomes_project 18 54716896 54749070 + MGP_AJ_P0049724 1700011I03Rik protein_coding protein_coding MGP_AJ_T0049725.1 MGP_AJ_G0024416.1 mouse_genomes_project 18 54745299 54923315 + MGP_AJ_P0049725 1700011I03Rik protein_coding protein_coding MGP_AJ_T0049692.1 MGP_AJ_G0024405.1 mouse_genomes_project 18 52024345 52127343 - MGP_AJ_P0049692 Zfp608 protein_coding protein_coding MGP_AJ_T0050254.1 MGP_AJ_G0024583.1 mouse_genomes_project 18 86285313 86447092 + MGP_AJ_P0050254 Rttn protein_coding protein_coding MGP_AJ_T0099710.1 MGP_AJ_G0037676.1 mouse_genomes_project 18 75980533 75980693 + Gm23895 snRNA snRNA MGP_AJ_T0003811.1 MGP_AJ_G0003420.1 mouse_genomes_project 18 34341969 34342408 - Gm38097 antisense antisense MGP_AJ_T0050156.1 MGP_AJ_G0024559.1 mouse_genomes_project 18 77559185 77576079 + MGP_AJ_P0050156 Txnl4a protein_coding protein_coding MGP_AJ_T0050160.1 MGP_AJ_G0024559.1 mouse_genomes_project 18 77559253 77574751 + MGP_AJ_P0050160 Txnl4a protein_coding protein_coding MGP_AJ_T0050162.1 MGP_AJ_G0024559.1 mouse_genomes_project 18 77559284 77571258 + Txnl4a protein_coding retained_intron MGP_AJ_T0050167.1 MGP_AJ_G0024559.1 mouse_genomes_project 18 77567811 77574887 + Txnl4a protein_coding processed_transcript MGP_AJ_T0017645.1 MGP_AJ_G0015345.1 mouse_genomes_project 18 75177340 75180472 - F830208F22Rik processed_transcript processed_transcript MGP_AJ_T0017646.1 MGP_AJ_G0015345.1 mouse_genomes_project 18 75177340 75180825 - F830208F22Rik processed_transcript processed_transcript MGP_AJ_T0049184.1 MGP_AJ_G0024202.1 mouse_genomes_project 18 31322329 31418341 + MGP_AJ_P0049184 Apc protein_coding protein_coding MGP_AJ_T0049185.1 MGP_AJ_G0024202.1 mouse_genomes_project 18 31322389 31427022 + MGP_AJ_P0049185 Apc protein_coding protein_coding MGP_AJ_T0049186.1 MGP_AJ_G0024202.1 mouse_genomes_project 18 31322389 31423441 + MGP_AJ_P0049186 Apc protein_coding protein_coding MGP_AJ_T0049187.1 MGP_AJ_G0024202.1 mouse_genomes_project 18 31322418 31405027 + Apc protein_coding retained_intron MGP_AJ_T0049188.1 MGP_AJ_G0024202.1 mouse_genomes_project 18 31322657 31380250 + MGP_AJ_P0049188 Apc protein_coding nonsense_mediated_decay MGP_AJ_T0049189.1 MGP_AJ_G0024202.1 mouse_genomes_project 18 31351652 31367642 + Apc protein_coding retained_intron MGP_AJ_T0049190.1 MGP_AJ_G0024202.1 mouse_genomes_project 18 31351656 31394888 + MGP_AJ_P0049190 Apc protein_coding protein_coding MGP_AJ_T0049191.1 MGP_AJ_G0024202.1 mouse_genomes_project 18 31404790 31419161 + MGP_AJ_P0049191 Apc protein_coding nonsense_mediated_decay MGP_AJ_T0049192.1 MGP_AJ_G0024202.1 mouse_genomes_project 18 31406085 31415573 + Apc protein_coding processed_transcript MGP_AJ_T0013335.1 MGP_AJ_G0011430.1 mouse_genomes_project 18 35417599 35418153 + processed_pseudogene processed_pseudogene MGP_AJ_T0100960.1 MGP_AJ_G0038926.1 mouse_genomes_project 18 43103634 43103761 + Gm26262 snoRNA snoRNA MGP_AJ_T0049426.1 MGP_AJ_G0024303.1 mouse_genomes_project 18 34838078 35011794 + MGP_AJ_P0049426 Pcdhga3 protein_coding protein_coding MGP_AJ_T0011447.1 MGP_AJ_G0009569.1 mouse_genomes_project 18 14188260 14188491 - Gm24015 misc_RNA misc_RNA MGP_AJ_T0099694.1 MGP_AJ_G0037660.1 mouse_genomes_project 18 43641091 43641185 - Gm24076 snRNA snRNA MGP_AJ_T0003812.1 MGP_AJ_G0003421.1 mouse_genomes_project 18 34606444 34610797 - Gm37446 antisense antisense MGP_AJ_T0048947.1 MGP_AJ_G0024104.1 mouse_genomes_project 18 6589604 6758757 + MGP_AJ_P0048947 Colec12 protein_coding protein_coding MGP_AJ_T0010235.1 MGP_AJ_G0008357.1 mouse_genomes_project 18 7675908 7676030 + Mir1b miRNA miRNA MGP_AJ_T0049417.1 MGP_AJ_G0024295.1 mouse_genomes_project 18 34673142 34680286 + MGP_AJ_P0049417 Pcdhb19 protein_coding protein_coding MGP_AJ_T0048978.1 MGP_AJ_G0024115.1 mouse_genomes_project 18 8625970 8730232 + MGP_AJ_P0048978 Rbbp8 protein_coding protein_coding MGP_AJ_T0048979.1 MGP_AJ_G0024115.1 mouse_genomes_project 18 8644513 8730232 + MGP_AJ_P0048979 Rbbp8 protein_coding protein_coding MGP_AJ_T0098427.1 MGP_AJ_G0036411.1 mouse_genomes_project 18 86605545 86609273 - pseudogene pseudogene MGP_AJ_T0049247.1 MGP_AJ_G0024224.1 mouse_genomes_project 18 32388164 32630167 - MGP_AJ_P0049247 Sil1 protein_coding protein_coding MGP_AJ_T0049459.1 MGP_AJ_G0024321.1 mouse_genomes_project 18 35013521 35105253 - MGP_AJ_P0049459 Diaph1 protein_coding protein_coding MGP_AJ_T0049460.1 MGP_AJ_G0024321.1 mouse_genomes_project 18 35013523 35105158 - MGP_AJ_P0049460 Diaph1 protein_coding protein_coding MGP_AJ_T0049461.1 MGP_AJ_G0024321.1 mouse_genomes_project 18 35013523 35105200 - MGP_AJ_P0049461 Diaph1 protein_coding protein_coding MGP_AJ_T0049462.1 MGP_AJ_G0024321.1 mouse_genomes_project 18 35013525 35076201 - MGP_AJ_P0049462 Diaph1 protein_coding protein_coding MGP_AJ_T0049463.1 MGP_AJ_G0024321.1 mouse_genomes_project 18 35014744 35105188 - MGP_AJ_P0049463 Diaph1 protein_coding protein_coding MGP_AJ_T0049464.1 MGP_AJ_G0024321.1 mouse_genomes_project 18 35015020 35023305 - Diaph1 protein_coding processed_transcript MGP_AJ_T0049465.1 MGP_AJ_G0024321.1 mouse_genomes_project 18 35025382 35026042 - Diaph1 protein_coding retained_intron MGP_AJ_T0049466.1 MGP_AJ_G0024321.1 mouse_genomes_project 18 35066057 35067843 - Diaph1 protein_coding retained_intron MGP_AJ_T0100976.1 MGP_AJ_G0038942.1 mouse_genomes_project 18 87745697 87745826 + Gm25418 snoRNA snoRNA MGP_AJ_T0049337.1 MGP_AJ_G0024247.1 mouse_genomes_project 18 33834709 33836567 + MGP_AJ_P0049337 Eif4ebp3 protein_coding protein_coding MGP_AJ_T0102449.1 MGP_AJ_G0040191.1 mouse_genomes_project 18 34191545 34192332 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0050260.1 MGP_AJ_G0024587.1 mouse_genomes_project 18 87821402 87834041 + MGP_AJ_P0050260 unknown_likely_coding unknown_likely_coding MGP_AJ_T0007014.1 MGP_AJ_G0005762.1 mouse_genomes_project 18 28568791 28577573 + Gm26658 lincRNA lincRNA MGP_AJ_T0049929.1 MGP_AJ_G0024493.1 mouse_genomes_project 18 64821964 64948430 - MGP_AJ_P0049929 Spire1 protein_coding protein_coding MGP_AJ_T0049930.1 MGP_AJ_G0024493.1 mouse_genomes_project 18 64821970 64888395 - MGP_AJ_P0049930 Spire1 protein_coding protein_coding MGP_AJ_T0049951.1 MGP_AJ_G0024503.1 mouse_genomes_project 18 65777202 65794417 - MGP_AJ_P0049951 Mc2r protein_coding protein_coding MGP_AJ_T0098631.1 MGP_AJ_G0036615.1 mouse_genomes_project 18 31761437 31761556 + n-R5s25 rRNA rRNA MGP_AJ_T0007004.1 MGP_AJ_G0005756.1 mouse_genomes_project 18 2043371 2046223 - Gm26682 lincRNA lincRNA MGP_AJ_T0049875.1 MGP_AJ_G0024475.1 mouse_genomes_project 18 62722761 62770569 + MGP_AJ_P0049875 Malt1 protein_coding protein_coding MGP_AJ_T0049876.1 MGP_AJ_G0024475.1 mouse_genomes_project 18 62722911 62768188 + MGP_AJ_P0049876 Malt1 protein_coding unknown_likely_coding MGP_AJ_T0049555.1 MGP_AJ_G0024348.1 mouse_genomes_project 18 39722655 39789230 + MGP_AJ_P0049555 Tcerg1 protein_coding protein_coding MGP_AJ_T0049556.1 MGP_AJ_G0024348.1 mouse_genomes_project 18 39722668 39788523 + MGP_AJ_P0049556 Tcerg1 protein_coding nonsense_mediated_decay MGP_AJ_T0049399.1 MGP_AJ_G0024279.1 mouse_genomes_project 18 34488314 34491996 + MGP_AJ_P0049399 Pcdhb3 protein_coding protein_coding MGP_AJ_T0049246.1 MGP_AJ_G0024223.1 mouse_genomes_project 18 32330849 32336863 - MGP_AJ_P0049246 Lrrtm2 protein_coding protein_coding MGP_AJ_T0007031.1 MGP_AJ_G0005775.1 mouse_genomes_project 18 42022861 42026487 + Gm43425 lincRNA lincRNA MGP_AJ_T0048867.1 MGP_AJ_G0024085.1 mouse_genomes_project 18 1259634 1281494 + MGP_AJ_P0048867 Mtpap protein_coding protein_coding MGP_AJ_T0010255.1 MGP_AJ_G0008377.1 mouse_genomes_project 18 57374131 57374344 + miRNA miRNA MGP_AJ_T0011466.1 MGP_AJ_G0009588.1 mouse_genomes_project 18 70973253 70973360 + Gm26438 misc_RNA misc_RNA MGP_AJ_T0013350.1 MGP_AJ_G0011445.1 mouse_genomes_project 18 50089809 50090368 + processed_pseudogene processed_pseudogene MGP_AJ_T0049660.1 MGP_AJ_G0024387.1 mouse_genomes_project 18 47295100 47364037 + MGP_AJ_P0049660 Hsd17b4 protein_coding protein_coding MGP_AJ_T0049661.1 MGP_AJ_G0024387.1 mouse_genomes_project 18 47295393 47309761 + Hsd17b4 protein_coding processed_transcript MGP_AJ_T0049662.1 MGP_AJ_G0024387.1 mouse_genomes_project 18 47309517 47314135 + Hsd17b4 protein_coding retained_intron MGP_AJ_T0049663.1 MGP_AJ_G0024387.1 mouse_genomes_project 18 47359091 47363740 + Hsd17b4 protein_coding retained_intron MGP_AJ_T0099692.1 MGP_AJ_G0037658.1 mouse_genomes_project 18 35475106 35475209 + Gm23205 snRNA snRNA MGP_AJ_T0049291.1 MGP_AJ_G0024235.1 mouse_genomes_project 18 32867378 32876221 - MGP_AJ_P0049291 Ecscr protein_coding protein_coding MGP_AJ_T0049292.1 MGP_AJ_G0024235.1 mouse_genomes_project 18 32867378 32875390 - MGP_AJ_P0049292 Ecscr protein_coding protein_coding MGP_AJ_T0049293.1 MGP_AJ_G0024235.1 mouse_genomes_project 18 32867565 32871571 - MGP_AJ_P0049293 Ecscr protein_coding protein_coding MGP_AJ_T0049294.1 MGP_AJ_G0024235.1 mouse_genomes_project 18 32868052 32871571 - MGP_AJ_P0049294 Ecscr protein_coding protein_coding MGP_AJ_T0049295.1 MGP_AJ_G0024235.1 mouse_genomes_project 18 32871528 32872168 - Ecscr protein_coding processed_transcript MGP_AJ_T0049296.1 MGP_AJ_G0024235.1 mouse_genomes_project 18 32871795 32876158 - Ecscr protein_coding processed_transcript MGP_AJ_T0049084.1 MGP_AJ_G0024157.1 mouse_genomes_project 18 20523050 20797808 + MGP_AJ_P0049084 Dtna protein_coding protein_coding MGP_AJ_T0049085.1 MGP_AJ_G0024157.1 mouse_genomes_project 18 20523050 20730710 + MGP_AJ_P0049085 Dtna protein_coding protein_coding MGP_AJ_T0049086.1 MGP_AJ_G0024157.1 mouse_genomes_project 18 20759502 20773872 + MGP_AJ_P0049086 Dtna protein_coding unknown_likely_coding MGP_AJ_T0010269.1 MGP_AJ_G0008391.1 mouse_genomes_project 18 67874483 67874587 + Mir6357 miRNA miRNA MGP_AJ_T0049565.1 MGP_AJ_G0024352.1 mouse_genomes_project 18 40548346 40661822 - MGP_AJ_P0049565 Dpysl3 protein_coding protein_coding MGP_AJ_T0049566.1 MGP_AJ_G0024352.1 mouse_genomes_project 18 40550091 40551401 - Dpysl3 protein_coding processed_transcript MGP_AJ_T0049567.1 MGP_AJ_G0024352.1 mouse_genomes_project 18 40551597 40595737 - MGP_AJ_P0049567 Dpysl3 protein_coding protein_coding MGP_AJ_T0049568.1 MGP_AJ_G0024352.1 mouse_genomes_project 18 40551658 40615860 - MGP_AJ_P0049568 Dpysl3 protein_coding protein_coding MGP_AJ_T0049569.1 MGP_AJ_G0024352.1 mouse_genomes_project 18 40557806 40569223 - MGP_AJ_P0049569 Dpysl3 protein_coding protein_coding MGP_AJ_T0049570.1 MGP_AJ_G0024352.1 mouse_genomes_project 18 40561004 40568817 - MGP_AJ_P0049570 Dpysl3 protein_coding protein_coding MGP_AJ_T0050259.1 MGP_AJ_G0024586.1 mouse_genomes_project 18 87751112 87783804 + MGP_AJ_P0050259 Tmx3 protein_coding protein_coding MGP_AJ_T0099691.1 MGP_AJ_G0037657.1 mouse_genomes_project 18 31289947 31290009 - Gm23411 snRNA snRNA MGP_AJ_T0099714.1 MGP_AJ_G0037680.1 mouse_genomes_project 18 82135323 82135479 - Gm25005 snRNA snRNA MGP_AJ_T0049824.1 MGP_AJ_G0024453.1 mouse_genomes_project 18 59058227 59171109 - MGP_AJ_P0049824 Ablim3 protein_coding protein_coding MGP_AJ_T0049825.1 MGP_AJ_G0024453.1 mouse_genomes_project 18 59058227 59171137 - MGP_AJ_P0049825 Ablim3 protein_coding protein_coding MGP_AJ_T0017604.1 MGP_AJ_G0015333.1 mouse_genomes_project 18 32684540 32689596 + Snhg4 processed_transcript lincRNA MGP_AJ_T0017605.1 MGP_AJ_G0015333.1 mouse_genomes_project 18 32684579 32685934 + Snhg4 processed_transcript retained_intron MGP_AJ_T0017606.1 MGP_AJ_G0015333.1 mouse_genomes_project 18 32684581 32688400 + Snhg4 processed_transcript retained_intron MGP_AJ_T0017607.1 MGP_AJ_G0015333.1 mouse_genomes_project 18 32684591 32687134 + Snhg4 processed_transcript retained_intron MGP_AJ_T0017608.1 MGP_AJ_G0015333.1 mouse_genomes_project 18 32687308 32688582 + Snhg4 processed_transcript retained_intron MGP_AJ_T0049827.1 MGP_AJ_G0024455.1 mouse_genomes_project 18 59437116 59439261 - MGP_AJ_P0049827 Adrb2 protein_coding protein_coding MGP_AJ_T0049764.1 MGP_AJ_G0024433.1 mouse_genomes_project 18 57915880 57956260 - MGP_AJ_P0049764 Ndst1 protein_coding unknown_likely_coding MGP_AJ_T0049590.1 MGP_AJ_G0024366.1 mouse_genomes_project 18 41539775 41559920 + MGP_AJ_P0049590 Myot protein_coding protein_coding MGP_AJ_T0049591.1 MGP_AJ_G0024366.1 mouse_genomes_project 18 41539775 41559920 + MGP_AJ_P0049591 Myot protein_coding protein_coding MGP_AJ_T0100945.1 MGP_AJ_G0038911.1 mouse_genomes_project 18 12911267 12911396 + Gm24228 snoRNA snoRNA MGP_AJ_T0048998.1 MGP_AJ_G0024121.1 mouse_genomes_project 18 9259220 9312583 - MGP_AJ_P0048998 Ankrd29 protein_coding protein_coding MGP_AJ_T0048999.1 MGP_AJ_G0024121.1 mouse_genomes_project 18 9259223 9278360 - Ankrd29 protein_coding processed_transcript MGP_AJ_T0049000.1 MGP_AJ_G0024121.1 mouse_genomes_project 18 9261440 9312510 - MGP_AJ_P0049000 Ankrd29 protein_coding protein_coding MGP_AJ_T0049001.1 MGP_AJ_G0024121.1 mouse_genomes_project 18 9282422 9312592 - MGP_AJ_P0049001 Ankrd29 protein_coding protein_coding MGP_AJ_T0100951.1 MGP_AJ_G0038917.1 mouse_genomes_project 18 28594408 28594541 - Gm25396 snoRNA snoRNA MGP_AJ_T0010233.1 MGP_AJ_G0008355.1 mouse_genomes_project 18 7251804 7251970 - Gm44409 miRNA miRNA MGP_AJ_T0099689.1 MGP_AJ_G0037655.1 mouse_genomes_project 18 30135481 30135585 - Gm22814 snRNA snRNA MGP_AJ_T0049408.1 MGP_AJ_G0024286.1 mouse_genomes_project 18 34584141 34586992 + MGP_AJ_P0049408 Pcdhb10 protein_coding protein_coding MGP_AJ_T0100973.1 MGP_AJ_G0038939.1 mouse_genomes_project 18 76873835 76873956 - Gm25824 snoRNA snoRNA MGP_AJ_T0049433.1 MGP_AJ_G0024307.1 mouse_genomes_project 18 34862718 35011794 + MGP_AJ_P0049433 Pcdhga5 protein_coding protein_coding MGP_AJ_T0010262.1 MGP_AJ_G0008384.1 mouse_genomes_project 18 58904903 58904973 - Mir145a miRNA miRNA MGP_AJ_T0011454.1 MGP_AJ_G0009576.1 mouse_genomes_project 18 35782659 35782730 + Gm27369 misc_RNA misc_RNA MGP_AJ_T0099711.1 MGP_AJ_G0037677.1 mouse_genomes_project 18 78383281 78383410 + Gm25718 snRNA snRNA MGP_AJ_T0049868.1 MGP_AJ_G0024472.1 mouse_genomes_project 18 61804844 61938010 - MGP_AJ_P0049868 Atp8b1 protein_coding protein_coding MGP_AJ_T0099700.1 MGP_AJ_G0037666.1 mouse_genomes_project 18 54860937 54861043 - Gm26038 snRNA snRNA MGP_AJ_T0049318.1 MGP_AJ_G0024243.1 mouse_genomes_project 18 33579178 33630597 - MGP_AJ_P0049318 Pfdn1 protein_coding protein_coding MGP_AJ_T0049729.1 MGP_AJ_G0024420.1 mouse_genomes_project 18 55856383 55875901 + MGP_AJ_P0049729 Isoc1 protein_coding protein_coding MGP_AJ_T0050093.1 MGP_AJ_G0024535.1 mouse_genomes_project 18 74179531 74226736 + MGP_AJ_P0050093 Skor2 protein_coding protein_coding MGP_AJ_T0098627.1 MGP_AJ_G0036611.1 mouse_genomes_project 18 9583749 9583863 - Gm22340 rRNA rRNA MGP_AJ_T0049095.1 MGP_AJ_G0024159.1 mouse_genomes_project 18 21084930 21094921 + MGP_AJ_P0049095 Zfp397 protein_coding protein_coding MGP_AJ_T0049445.1 MGP_AJ_G0024315.1 mouse_genomes_project 18 34915347 35011794 + MGP_AJ_P0049445 Pcdhga10 protein_coding protein_coding MGP_AJ_T0100955.1 MGP_AJ_G0038921.1 mouse_genomes_project 18 32060620 32060687 - Gm22200 snoRNA snoRNA MGP_AJ_T0050243.1 MGP_AJ_G0024581.1 mouse_genomes_project 18 84083229 84090403 + MGP_AJ_P0050243 Cbln2 protein_coding protein_coding MGP_AJ_T0050244.1 MGP_AJ_G0024581.1 mouse_genomes_project 18 84083639 84089709 + MGP_AJ_P0050244 Cbln2 protein_coding protein_coding MGP_AJ_T0050245.1 MGP_AJ_G0024581.1 mouse_genomes_project 18 84084184 84090401 + MGP_AJ_P0050245 Cbln2 protein_coding protein_coding MGP_AJ_T0050246.1 MGP_AJ_G0024581.1 mouse_genomes_project 18 84085167 84090403 + MGP_AJ_P0050246 Cbln2 protein_coding protein_coding MGP_AJ_T0049395.1 MGP_AJ_G0024276.1 mouse_genomes_project 18 34313358 34357515 + MGP_AJ_P0049395 Pcdhac2 protein_coding protein_coding MGP_AJ_T0100954.1 MGP_AJ_G0038920.1 mouse_genomes_project 18 31191163 31191289 + Gm24432 snoRNA snoRNA MGP_AJ_T0049170.1 MGP_AJ_G0024195.1 mouse_genomes_project 18 29943855 29948266 + MGP_AJ_P0049170 Tslp protein_coding protein_coding MGP_AJ_T0013367.1 MGP_AJ_G0011462.1 mouse_genomes_project 18 87584587 87585049 - processed_pseudogene processed_pseudogene MGP_AJ_T0049939.1 MGP_AJ_G0024499.1 mouse_genomes_project 18 65292551 65620463 + MGP_AJ_P0049939 Ldlrad4 protein_coding protein_coding MGP_AJ_T0101760.1 MGP_AJ_G0039686.1 mouse_genomes_project 18 72656837 72665497 - transcribed_processed_pseudogene processed_transcript MGP_AJ_T0101761.1 MGP_AJ_G0039686.1 mouse_genomes_project 18 72657108 72657366 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0101762.1 MGP_AJ_G0039686.1 mouse_genomes_project 18 72663852 72665509 - transcribed_processed_pseudogene processed_transcript MGP_AJ_T0049153.1 MGP_AJ_G0024184.1 mouse_genomes_project 18 28946903 28947456 - MGP_AJ_P0049153 protein_coding protein_coding MGP_AJ_T0017637.1 MGP_AJ_G0015342.1 mouse_genomes_project 18 63600295 63628591 + Gm15958 processed_transcript processed_transcript MGP_AJ_T0017638.1 MGP_AJ_G0015342.1 mouse_genomes_project 18 63600908 63621316 + Gm15958 processed_transcript processed_transcript MGP_AJ_T0049409.1 MGP_AJ_G0024287.1 mouse_genomes_project 18 34594009 34598767 + MGP_AJ_P0049409 Pcdhb11 protein_coding protein_coding MGP_AJ_T0013324.1 MGP_AJ_G0011419.1 mouse_genomes_project 18 18445736 18446036 + processed_pseudogene processed_pseudogene MGP_AJ_T0049625.1 MGP_AJ_G0024381.1 mouse_genomes_project 18 44027407 44082449 + MGP_AJ_P0049625 Lvrn protein_coding protein_coding MGP_AJ_T0049626.1 MGP_AJ_G0024381.1 mouse_genomes_project 18 44027560 44081422 + MGP_AJ_P0049626 Lvrn protein_coding unknown_likely_coding MGP_AJ_T0050056.1 MGP_AJ_G0024521.1 mouse_genomes_project 18 71556719 71569275 - MGP_AJ_P0050056 Ska1 protein_coding protein_coding MGP_AJ_T0050057.1 MGP_AJ_G0024521.1 mouse_genomes_project 18 71556719 71569275 - MGP_AJ_P0050057 Ska1 protein_coding protein_coding MGP_AJ_T0007025.1 MGP_AJ_G0005771.1 mouse_genomes_project 18 31912033 31918773 - Gm26538 lincRNA lincRNA MGP_AJ_T0003794.1 MGP_AJ_G0003407.1 mouse_genomes_project 18 3373996 3380772 + Gm28529 antisense antisense MGP_AJ_T0003795.1 MGP_AJ_G0003407.1 mouse_genomes_project 18 3374008 3374978 + Gm28529 antisense antisense MGP_AJ_T0003797.1 MGP_AJ_G0003409.1 mouse_genomes_project 18 9200214 9205134 + Gm15956 antisense antisense MGP_AJ_T0049234.1 MGP_AJ_G0024217.1 mouse_genomes_project 18 31891936 31955943 + MGP_AJ_P0049234 Kdm3b protein_coding protein_coding MGP_AJ_T0049235.1 MGP_AJ_G0024217.1 mouse_genomes_project 18 31935985 31955578 + MGP_AJ_P0049235 Kdm3b protein_coding unknown_likely_coding MGP_AJ_T0049104.1 MGP_AJ_G0024164.1 mouse_genomes_project 18 21339410 21428068 + MGP_AJ_P0049104 Galnt1 protein_coding protein_coding MGP_AJ_T0049105.1 MGP_AJ_G0024164.1 mouse_genomes_project 18 21339833 21428060 + MGP_AJ_P0049105 Galnt1 protein_coding protein_coding MGP_AJ_T0049106.1 MGP_AJ_G0024164.1 mouse_genomes_project 18 21340025 21394169 + MGP_AJ_P0049106 Galnt1 protein_coding protein_coding MGP_AJ_T0049107.1 MGP_AJ_G0024164.1 mouse_genomes_project 18 21367319 21428060 + MGP_AJ_P0049107 Galnt1 protein_coding protein_coding MGP_AJ_T0049108.1 MGP_AJ_G0024164.1 mouse_genomes_project 18 21373038 21407233 + MGP_AJ_P0049108 Galnt1 protein_coding nonsense_mediated_decay MGP_AJ_T0049109.1 MGP_AJ_G0024164.1 mouse_genomes_project 18 21380472 21411302 + MGP_AJ_P0049109 Galnt1 protein_coding nonsense_mediated_decay MGP_AJ_T0049110.1 MGP_AJ_G0024164.1 mouse_genomes_project 18 21419611 21422471 + Galnt1 protein_coding processed_transcript MGP_AJ_T0049111.1 MGP_AJ_G0024164.1 mouse_genomes_project 18 21419649 21422791 + Galnt1 protein_coding processed_transcript MGP_AJ_T0048993.1 MGP_AJ_G0024120.1 mouse_genomes_project 18 9194973 9242869 - MGP_AJ_P0048993 Npc1 protein_coding protein_coding MGP_AJ_T0048994.1 MGP_AJ_G0024120.1 mouse_genomes_project 18 9216842 9219013 - Npc1 protein_coding processed_transcript MGP_AJ_T0048995.1 MGP_AJ_G0024120.1 mouse_genomes_project 18 9224045 9242827 - Npc1 protein_coding retained_intron MGP_AJ_T0048996.1 MGP_AJ_G0024120.1 mouse_genomes_project 18 9224461 9242795 - Npc1 protein_coding retained_intron MGP_AJ_T0048997.1 MGP_AJ_G0024120.1 mouse_genomes_project 18 9228313 9230555 - Npc1 protein_coding processed_transcript MGP_AJ_T0049027.1 MGP_AJ_G0024128.1 mouse_genomes_project 18 10687129 10973836 - MGP_AJ_P0049027 Zfp521 protein_coding protein_coding MGP_AJ_T0007036.1 MGP_AJ_G0005780.1 mouse_genomes_project 18 52127448 52217787 + Gm4221 lincRNA lincRNA MGP_AJ_T0007037.1 MGP_AJ_G0005780.1 mouse_genomes_project 18 52196997 52219864 + Gm4221 lincRNA lincRNA MGP_AJ_T0017647.1 MGP_AJ_G0015346.1 mouse_genomes_project 18 82110585 82112357 - D030046N08Rik processed_transcript processed_transcript MGP_AJ_T0099699.1 MGP_AJ_G0037665.1 mouse_genomes_project 18 52324716 52324796 + Gm22597 snRNA snRNA MGP_AJ_T0049915.1 MGP_AJ_G0024483.1 mouse_genomes_project 18 63346077 63600468 - Ccbe1 protein_coding processed_transcript MGP_AJ_T0049916.1 MGP_AJ_G0024483.1 mouse_genomes_project 18 63357645 63600810 - MGP_AJ_P0049916 Ccbe1 protein_coding nonsense_mediated_decay MGP_AJ_T0049917.1 MGP_AJ_G0024483.1 mouse_genomes_project 18 63361750 63600860 - MGP_AJ_P0049917 Ccbe1 protein_coding protein_coding MGP_AJ_T0049918.1 MGP_AJ_G0024483.1 mouse_genomes_project 18 63578192 63611804 - Ccbe1 protein_coding processed_transcript MGP_AJ_T0049386.1 MGP_AJ_G0024271.1 mouse_genomes_project 18 34173524 34357515 + MGP_AJ_P0049386 Pcdha9 protein_coding protein_coding MGP_AJ_T0100972.1 MGP_AJ_G0038938.1 mouse_genomes_project 18 75032100 75032232 + Gm26014 snoRNA snoRNA MGP_AJ_T0049210.1 MGP_AJ_G0024210.1 mouse_genomes_project 18 31712429 31738991 - MGP_AJ_P0049210 Brd8 protein_coding protein_coding MGP_AJ_T0049211.1 MGP_AJ_G0024210.1 mouse_genomes_project 18 31712429 31738991 - MGP_AJ_P0049211 Brd8 protein_coding protein_coding MGP_AJ_T0049212.1 MGP_AJ_G0024210.1 mouse_genomes_project 18 31713429 31738943 - Brd8 protein_coding retained_intron MGP_AJ_T0049213.1 MGP_AJ_G0024210.1 mouse_genomes_project 18 31713458 31738991 - MGP_AJ_P0049213 Brd8 protein_coding protein_coding MGP_AJ_T0049214.1 MGP_AJ_G0024210.1 mouse_genomes_project 18 31714774 31738991 - MGP_AJ_P0049214 Brd8 protein_coding protein_coding MGP_AJ_T0049215.1 MGP_AJ_G0024210.1 mouse_genomes_project 18 31723903 31738991 - Brd8 protein_coding retained_intron MGP_AJ_T0049216.1 MGP_AJ_G0024210.1 mouse_genomes_project 18 31724846 31738944 - Brd8 protein_coding processed_transcript MGP_AJ_T0049217.1 MGP_AJ_G0024210.1 mouse_genomes_project 18 31736303 31738991 - Brd8 protein_coding retained_intron MGP_AJ_T0049712.1 MGP_AJ_G0024411.1 mouse_genomes_project 18 53930173 54092795 - MGP_AJ_P0049712 March3 protein_coding protein_coding MGP_AJ_T0049713.1 MGP_AJ_G0024411.1 mouse_genomes_project 18 53945034 53983874 - MGP_AJ_P0049713 March3 protein_coding protein_coding MGP_AJ_T0049714.1 MGP_AJ_G0024411.1 mouse_genomes_project 18 53974083 54092762 - March3 protein_coding retained_intron MGP_AJ_T0001000.1 MGP_AJ_G0000931.1 mouse_genomes_project 18 5836132 5837724 + TEC TEC MGP_AJ_T0007053.1 MGP_AJ_G0005793.1 mouse_genomes_project 18 80143844 80148381 - 2210420H20Rik lincRNA lincRNA MGP_AJ_T0098630.1 MGP_AJ_G0036614.1 mouse_genomes_project 18 31624008 31624125 + n-R5s24 rRNA rRNA MGP_AJ_T0100956.1 MGP_AJ_G0038922.1 mouse_genomes_project 18 32062030 32062100 - Gm26109 snoRNA snoRNA MGP_AJ_T0049350.1 MGP_AJ_G0024250.1 mouse_genomes_project 18 33856515 33868068 - MGP_AJ_P0049350 E230025N22Rik protein_coding protein_coding MGP_AJ_T0049550.1 MGP_AJ_G0024344.1 mouse_genomes_project 18 39392406 39408368 - MGP_AJ_P0049550 Plac8l1 protein_coding protein_coding MGP_AJ_T0049118.1 MGP_AJ_G0024168.1 mouse_genomes_project 18 21744643 21780611 + MGP_AJ_P0049118 Elp2 protein_coding protein_coding MGP_AJ_T0011464.1 MGP_AJ_G0009586.1 mouse_genomes_project 18 63983784 63984103 + Gm22219 misc_RNA misc_RNA MGP_AJ_T0003823.1 MGP_AJ_G0003431.1 mouse_genomes_project 18 42847175 43060151 - antisense antisense MGP_AJ_T0003824.1 MGP_AJ_G0003431.1 mouse_genomes_project 18 42848817 43020237 - antisense antisense MGP_AJ_T0050055.1 MGP_AJ_G0024520.1 mouse_genomes_project 18 71420580 71421063 + MGP_AJ_P0050055 Gm9925 protein_coding protein_coding MGP_AJ_T0049924.1 MGP_AJ_G0024488.1 mouse_genomes_project 18 64611086 64642455 + MGP_AJ_P0049924 Impa2 protein_coding protein_coding MGP_AJ_T0007021.1 MGP_AJ_G0005769.1 mouse_genomes_project 18 30885568 30886663 + Epb41l4aos lincRNA lincRNA MGP_AJ_T0007022.1 MGP_AJ_G0005769.1 mouse_genomes_project 18 30885615 30886646 + Epb41l4aos lincRNA lincRNA MGP_AJ_T0049495.1 MGP_AJ_G0024327.1 mouse_genomes_project 18 35423013 35435280 + MGP_AJ_P0049495 0610009O20Rik protein_coding protein_coding MGP_AJ_T0049727.1 MGP_AJ_G0024418.1 mouse_genomes_project 18 55197255 55403982 - MGP_AJ_P0049727 Fbn2 protein_coding protein_coding MGP_AJ_T0011445.1 MGP_AJ_G0009567.1 mouse_genomes_project 18 13077570 13077871 + Gm22389 misc_RNA misc_RNA MGP_AJ_T0048922.1 MGP_AJ_G0024095.1 mouse_genomes_project 18 3819311 3846232 - Mkx protein_coding processed_transcript MGP_AJ_T0048923.1 MGP_AJ_G0024095.1 mouse_genomes_project 18 3844576 3915537 - MGP_AJ_P0048923 Mkx protein_coding protein_coding MGP_AJ_T0048924.1 MGP_AJ_G0024095.1 mouse_genomes_project 18 3846562 3903729 - Mkx protein_coding retained_intron MGP_AJ_T0048925.1 MGP_AJ_G0024095.1 mouse_genomes_project 18 3911376 3914539 - Mkx protein_coding processed_transcript MGP_AJ_T0048926.1 MGP_AJ_G0024095.1 mouse_genomes_project 18 3913044 3915483 - Mkx protein_coding retained_intron MGP_AJ_T0050029.1 MGP_AJ_G0024512.1 mouse_genomes_project 18 67930616 67989604 + MGP_AJ_P0050029 Mbd2 protein_coding protein_coding MGP_AJ_T0050030.1 MGP_AJ_G0024512.1 mouse_genomes_project 18 67930761 67946170 + MGP_AJ_P0050030 Mbd2 protein_coding protein_coding MGP_AJ_T0050031.1 MGP_AJ_G0024512.1 mouse_genomes_project 18 67944046 67986266 + MGP_AJ_P0050031 Mbd2 protein_coding nonsense_mediated_decay MGP_AJ_T0050032.1 MGP_AJ_G0024512.1 mouse_genomes_project 18 67956697 67980634 + Mbd2 protein_coding retained_intron MGP_AJ_T0050033.1 MGP_AJ_G0024512.1 mouse_genomes_project 18 67981142 67989250 + Mbd2 protein_coding retained_intron MGP_AJ_T0098633.1 MGP_AJ_G0036617.1 mouse_genomes_project 18 55426410 55426514 - Gm25660 rRNA rRNA MGP_AJ_T0003819.1 MGP_AJ_G0003428.1 mouse_genomes_project 18 36573176 36596259 - Gm15337 antisense antisense MGP_AJ_T0099715.1 MGP_AJ_G0037681.1 mouse_genomes_project 18 83727107 83727214 + Gm25453 snRNA snRNA MGP_AJ_T0007016.1 MGP_AJ_G0005764.1 mouse_genomes_project 18 28985924 28988392 - Gm26823 lincRNA lincRNA MGP_AJ_T0050255.1 MGP_AJ_G0024584.1 mouse_genomes_project 18 86507989 86581496 + MGP_AJ_P0050255 Cd226 protein_coding protein_coding MGP_AJ_T0050256.1 MGP_AJ_G0024584.1 mouse_genomes_project 18 86508056 86580456 + MGP_AJ_P0050256 Cd226 protein_coding protein_coding MGP_AJ_T0049378.1 MGP_AJ_G0024265.1 mouse_genomes_project 18 34136538 34357515 + MGP_AJ_P0049378 Pcdha5 protein_coding protein_coding MGP_AJ_T0049488.1 MGP_AJ_G0024325.1 mouse_genomes_project 18 35142318 35168433 - MGP_AJ_P0049488 Arap3 protein_coding unknown_likely_coding MGP_AJ_T0050024.1 MGP_AJ_G0024511.1 mouse_genomes_project 18 67872117 67888023 - MGP_AJ_P0050024 Poli protein_coding protein_coding MGP_AJ_T0050025.1 MGP_AJ_G0024511.1 mouse_genomes_project 18 67872120 67888505 - MGP_AJ_P0050025 Poli protein_coding protein_coding MGP_AJ_T0050026.1 MGP_AJ_G0024511.1 mouse_genomes_project 18 67872121 67888319 - MGP_AJ_P0050026 Poli protein_coding protein_coding MGP_AJ_T0050027.1 MGP_AJ_G0024511.1 mouse_genomes_project 18 67872122 67888023 - MGP_AJ_P0050027 Poli protein_coding protein_coding MGP_AJ_T0050028.1 MGP_AJ_G0024511.1 mouse_genomes_project 18 67872124 67888153 - MGP_AJ_P0050028 Poli protein_coding nonsense_mediated_decay MGP_AJ_T0013314.1 MGP_AJ_G0011409.1 mouse_genomes_project 18 9178767 9179726 + processed_pseudogene processed_pseudogene MGP_AJ_T0049837.1 MGP_AJ_G0024462.1 mouse_genomes_project 18 59929934 59930755 + MGP_AJ_P0049837 Gm17732 protein_coding protein_coding MGP_AJ_T0049272.1 MGP_AJ_G0024228.1 mouse_genomes_project 18 32737433 32760485 + MGP_AJ_P0049272 Paip2 protein_coding protein_coding MGP_AJ_T0049273.1 MGP_AJ_G0024228.1 mouse_genomes_project 18 32737440 32759649 + MGP_AJ_P0049273 Paip2 protein_coding protein_coding MGP_AJ_T0049274.1 MGP_AJ_G0024228.1 mouse_genomes_project 18 32737457 32759818 + MGP_AJ_P0049274 Paip2 protein_coding protein_coding MGP_AJ_T0049275.1 MGP_AJ_G0024228.1 mouse_genomes_project 18 32737465 32760482 + MGP_AJ_P0049275 Paip2 protein_coding protein_coding MGP_AJ_T0049276.1 MGP_AJ_G0024228.1 mouse_genomes_project 18 32738053 32759694 + MGP_AJ_P0049276 Paip2 protein_coding protein_coding MGP_AJ_T0049277.1 MGP_AJ_G0024228.1 mouse_genomes_project 18 32749092 32752234 + Paip2 protein_coding retained_intron MGP_AJ_T0049278.1 MGP_AJ_G0024228.1 mouse_genomes_project 18 32749793 32752683 + Paip2 protein_coding retained_intron MGP_AJ_T0100950.1 MGP_AJ_G0038916.1 mouse_genomes_project 18 27593486 27593598 + Gm22870 snoRNA snoRNA MGP_AJ_T0001006.1 MGP_AJ_G0000937.1 mouse_genomes_project 18 52474331 52474763 + TEC TEC MGP_AJ_T0048943.1 MGP_AJ_G0024100.1 mouse_genomes_project 18 6123662 6127010 + MGP_AJ_P0048943 Fzd8 protein_coding protein_coding MGP_AJ_T0048862.1 MGP_AJ_G0024084.1 mouse_genomes_project 18 1214943 1236639 - MGP_AJ_P0048862 Map3k8 protein_coding protein_coding MGP_AJ_T0048863.1 MGP_AJ_G0024084.1 mouse_genomes_project 18 1214956 1236643 - MGP_AJ_P0048863 Map3k8 protein_coding nonsense_mediated_decay MGP_AJ_T0048864.1 MGP_AJ_G0024084.1 mouse_genomes_project 18 1214957 1219912 - Map3k8 protein_coding processed_transcript MGP_AJ_T0048865.1 MGP_AJ_G0024084.1 mouse_genomes_project 18 1217461 1218665 - Map3k8 protein_coding retained_intron MGP_AJ_T0048866.1 MGP_AJ_G0024084.1 mouse_genomes_project 18 1231126 1236701 - Map3k8 protein_coding retained_intron MGP_AJ_T0049795.1 MGP_AJ_G0024443.1 mouse_genomes_project 18 58378763 58425366 - MGP_AJ_P0049795 Hmgxb3 protein_coding protein_coding MGP_AJ_T0049670.1 MGP_AJ_G0024394.1 mouse_genomes_project 18 49648229 49661689 - MGP_AJ_P0049670 Lox protein_coding protein_coding MGP_AJ_T0049671.1 MGP_AJ_G0024394.1 mouse_genomes_project 18 49649398 49661530 - MGP_AJ_P0049671 Lox protein_coding protein_coding MGP_AJ_T0013316.1 MGP_AJ_G0011411.1 mouse_genomes_project 18 9294068 9294514 + processed_pseudogene processed_pseudogene MGP_AJ_T0007008.1 MGP_AJ_G0005759.1 mouse_genomes_project 18 8821158 8840374 - Gm6277 lincRNA lincRNA MGP_AJ_T0007009.1 MGP_AJ_G0005760.1 mouse_genomes_project 18 13880026 13886403 + Gm15328 lincRNA lincRNA MGP_AJ_T0003815.1 MGP_AJ_G0003424.1 mouse_genomes_project 18 34975037 34977242 - BC037039 antisense antisense MGP_AJ_T0049179.1 MGP_AJ_G0024199.1 mouse_genomes_project 18 30535615 30562322 - MGP_AJ_P0049179 Nrep protein_coding protein_coding MGP_AJ_T0049180.1 MGP_AJ_G0024199.1 mouse_genomes_project 18 30535615 30562706 - MGP_AJ_P0049180 Nrep protein_coding protein_coding MGP_AJ_T0049181.1 MGP_AJ_G0024199.1 mouse_genomes_project 18 30535615 30562424 - MGP_AJ_P0049181 Nrep protein_coding protein_coding MGP_AJ_T0049369.1 MGP_AJ_G0024260.1 mouse_genomes_project 18 34106283 34357519 + MGP_AJ_P0049369 Pcdha1 protein_coding protein_coding MGP_AJ_T0049370.1 MGP_AJ_G0024260.1 mouse_genomes_project 18 34106384 34357515 + MGP_AJ_P0049370 Pcdha1 protein_coding protein_coding MGP_AJ_T0013361.1 MGP_AJ_G0011456.1 mouse_genomes_project 18 74562921 74563895 - processed_pseudogene processed_pseudogene MGP_AJ_T0049229.1 MGP_AJ_G0024213.1 mouse_genomes_project 18 31804806 31835145 - MGP_AJ_P0049229 Gfra3 protein_coding protein_coding MGP_AJ_T0099128.1 MGP_AJ_G0037096.1 mouse_genomes_project 18 78334847 78343809 - Gm27238 sense_overlapping sense_overlapping MGP_AJ_T0100965.1 MGP_AJ_G0038931.1 mouse_genomes_project 18 60812011 60812155 + Gm22210 snoRNA snoRNA MGP_AJ_T0049042.1 MGP_AJ_G0024137.1 mouse_genomes_project 18 13650666 13871962 - MGP_AJ_P0049042 Cdh2 protein_coding protein_coding MGP_AJ_T0049043.1 MGP_AJ_G0024137.1 mouse_genomes_project 18 13834785 13872030 - Cdh2 protein_coding retained_intron MGP_AJ_T0017644.1 MGP_AJ_G0015344.1 mouse_genomes_project 18 72739452 72741208 - Gm20544 processed_transcript processed_transcript MGP_AJ_T0049237.1 MGP_AJ_G0024219.1 mouse_genomes_project 18 31977238 31982399 + MGP_AJ_P0049237 Egr1 protein_coding protein_coding MGP_AJ_T0049238.1 MGP_AJ_G0024219.1 mouse_genomes_project 18 31978621 31982371 + MGP_AJ_P0049238 Egr1 protein_coding protein_coding MGP_AJ_T0049387.1 MGP_AJ_G0024272.1 mouse_genomes_project 18 34182213 34357515 + MGP_AJ_P0049387 Pcdha11 protein_coding protein_coding MGP_AJ_T0049953.1 MGP_AJ_G0024505.1 mouse_genomes_project 18 66725208 66946272 + MGP_AJ_P0049953 Tcf4 protein_coding protein_coding MGP_AJ_T0049954.1 MGP_AJ_G0024505.1 mouse_genomes_project 18 66725998 67067358 + MGP_AJ_P0049954 Tcf4 protein_coding protein_coding MGP_AJ_T0049955.1 MGP_AJ_G0024505.1 mouse_genomes_project 18 66726341 67072089 + MGP_AJ_P0049955 Tcf4 protein_coding protein_coding MGP_AJ_T0049956.1 MGP_AJ_G0024505.1 mouse_genomes_project 18 66726344 67066391 + MGP_AJ_P0049956 Tcf4 protein_coding protein_coding MGP_AJ_T0049957.1 MGP_AJ_G0024505.1 mouse_genomes_project 18 66726364 66946937 + MGP_AJ_P0049957 Tcf4 protein_coding protein_coding MGP_AJ_T0049958.1 MGP_AJ_G0024505.1 mouse_genomes_project 18 66726381 67066279 + MGP_AJ_P0049958 Tcf4 protein_coding protein_coding MGP_AJ_T0049959.1 MGP_AJ_G0024505.1 mouse_genomes_project 18 66727574 67066405 + MGP_AJ_P0049959 Tcf4 protein_coding protein_coding MGP_AJ_T0049960.1 MGP_AJ_G0024505.1 mouse_genomes_project 18 66727576 67067540 + MGP_AJ_P0049960 Tcf4 protein_coding protein_coding MGP_AJ_T0049961.1 MGP_AJ_G0024505.1 mouse_genomes_project 18 66727576 67070977 + MGP_AJ_P0049961 Tcf4 protein_coding protein_coding MGP_AJ_T0049962.1 MGP_AJ_G0024505.1 mouse_genomes_project 18 66727753 67066213 + MGP_AJ_P0049962 Tcf4 protein_coding protein_coding MGP_AJ_T0049963.1 MGP_AJ_G0024505.1 mouse_genomes_project 18 66727755 67019878 + MGP_AJ_P0049963 Tcf4 protein_coding protein_coding MGP_AJ_T0049964.1 MGP_AJ_G0024505.1 mouse_genomes_project 18 66727765 66869391 + Tcf4 protein_coding processed_transcript MGP_AJ_T0049965.1 MGP_AJ_G0024505.1 mouse_genomes_project 18 66727855 67066213 + MGP_AJ_P0049965 Tcf4 protein_coding protein_coding MGP_AJ_T0049966.1 MGP_AJ_G0024505.1 mouse_genomes_project 18 66728178 67016697 + MGP_AJ_P0049966 Tcf4 protein_coding protein_coding MGP_AJ_T0049967.1 MGP_AJ_G0024505.1 mouse_genomes_project 18 66728386 67066240 + MGP_AJ_P0049967 Tcf4 protein_coding protein_coding MGP_AJ_T0049968.1 MGP_AJ_G0024505.1 mouse_genomes_project 18 66729334 67066213 + MGP_AJ_P0049968 Tcf4 protein_coding protein_coding MGP_AJ_T0049969.1 MGP_AJ_G0024505.1 mouse_genomes_project 18 66729380 66739370 + Tcf4 protein_coding processed_transcript MGP_AJ_T0049970.1 MGP_AJ_G0024505.1 mouse_genomes_project 18 66730299 66946831 + MGP_AJ_P0049970 Tcf4 protein_coding protein_coding MGP_AJ_T0049971.1 MGP_AJ_G0024505.1 mouse_genomes_project 18 66730310 67066453 + MGP_AJ_P0049971 Tcf4 protein_coding protein_coding MGP_AJ_T0049972.1 MGP_AJ_G0024505.1 mouse_genomes_project 18 66730312 66946838 + MGP_AJ_P0049972 Tcf4 protein_coding protein_coding MGP_AJ_T0049973.1 MGP_AJ_G0024505.1 mouse_genomes_project 18 66730563 67066464 + MGP_AJ_P0049973 Tcf4 protein_coding protein_coding MGP_AJ_T0049974.1 MGP_AJ_G0024505.1 mouse_genomes_project 18 66730622 67035465 + Tcf4 protein_coding processed_transcript MGP_AJ_T0049975.1 MGP_AJ_G0024505.1 mouse_genomes_project 18 66730976 67025974 + MGP_AJ_P0049975 Tcf4 protein_coding protein_coding MGP_AJ_T0049976.1 MGP_AJ_G0024505.1 mouse_genomes_project 18 66797334 67066454 + MGP_AJ_P0049976 Tcf4 protein_coding protein_coding MGP_AJ_T0049977.1 MGP_AJ_G0024505.1 mouse_genomes_project 18 66880928 67019926 + MGP_AJ_P0049977 Tcf4 protein_coding protein_coding MGP_AJ_T0049978.1 MGP_AJ_G0024505.1 mouse_genomes_project 18 66882253 67066260 + MGP_AJ_P0049978 Tcf4 protein_coding protein_coding MGP_AJ_T0049979.1 MGP_AJ_G0024505.1 mouse_genomes_project 18 66882392 67040738 + MGP_AJ_P0049979 Tcf4 protein_coding protein_coding MGP_AJ_T0049980.1 MGP_AJ_G0024505.1 mouse_genomes_project 18 66882514 67035506 + MGP_AJ_P0049980 Tcf4 protein_coding protein_coding MGP_AJ_T0049981.1 MGP_AJ_G0024505.1 mouse_genomes_project 18 66901811 67066269 + MGP_AJ_P0049981 Tcf4 protein_coding protein_coding MGP_AJ_T0049982.1 MGP_AJ_G0024505.1 mouse_genomes_project 18 66902050 67026030 + MGP_AJ_P0049982 Tcf4 protein_coding protein_coding MGP_AJ_T0049983.1 MGP_AJ_G0024505.1 mouse_genomes_project 18 66902098 67066213 + MGP_AJ_P0049983 Tcf4 protein_coding protein_coding MGP_AJ_T0049984.1 MGP_AJ_G0024505.1 mouse_genomes_project 18 66902108 67066292 + MGP_AJ_P0049984 Tcf4 protein_coding protein_coding MGP_AJ_T0049985.1 MGP_AJ_G0024505.1 mouse_genomes_project 18 66902153 67019963 + MGP_AJ_P0049985 Tcf4 protein_coding protein_coding MGP_AJ_T0049986.1 MGP_AJ_G0024505.1 mouse_genomes_project 18 66903492 67025990 + MGP_AJ_P0049986 Tcf4 protein_coding protein_coding MGP_AJ_T0049987.1 MGP_AJ_G0024505.1 mouse_genomes_project 18 66903630 67066137 + MGP_AJ_P0049987 Tcf4 protein_coding protein_coding MGP_AJ_T0049988.1 MGP_AJ_G0024505.1 mouse_genomes_project 18 66903833 67040937 + MGP_AJ_P0049988 Tcf4 protein_coding protein_coding MGP_AJ_T0049989.1 MGP_AJ_G0024505.1 mouse_genomes_project 18 66903856 66906675 + Tcf4 protein_coding retained_intron MGP_AJ_T0049990.1 MGP_AJ_G0024505.1 mouse_genomes_project 18 66903870 66946877 + Tcf4 protein_coding processed_transcript MGP_AJ_T0049991.1 MGP_AJ_G0024505.1 mouse_genomes_project 18 66904193 67066275 + MGP_AJ_P0049991 Tcf4 protein_coding protein_coding MGP_AJ_T0049992.1 MGP_AJ_G0024505.1 mouse_genomes_project 18 66904333 67019925 + MGP_AJ_P0049992 Tcf4 protein_coding protein_coding MGP_AJ_T0049993.1 MGP_AJ_G0024505.1 mouse_genomes_project 18 66904513 67016743 + Tcf4 protein_coding retained_intron MGP_AJ_T0049994.1 MGP_AJ_G0024505.1 mouse_genomes_project 18 66945195 67034262 + Tcf4 protein_coding processed_transcript MGP_AJ_T0049995.1 MGP_AJ_G0024505.1 mouse_genomes_project 18 66945523 67020004 + Tcf4 protein_coding processed_transcript MGP_AJ_T0049996.1 MGP_AJ_G0024505.1 mouse_genomes_project 18 66975115 67066460 + MGP_AJ_P0049996 Tcf4 protein_coding protein_coding MGP_AJ_T0049997.1 MGP_AJ_G0024505.1 mouse_genomes_project 18 66975505 67040885 + MGP_AJ_P0049997 Tcf4 protein_coding protein_coding MGP_AJ_T0049998.1 MGP_AJ_G0024505.1 mouse_genomes_project 18 66975546 67058744 + MGP_AJ_P0049998 Tcf4 protein_coding protein_coding MGP_AJ_T0049999.1 MGP_AJ_G0024505.1 mouse_genomes_project 18 66975552 67065738 + MGP_AJ_P0049999 Tcf4 protein_coding nonsense_mediated_decay MGP_AJ_T0050000.1 MGP_AJ_G0024505.1 mouse_genomes_project 18 66975559 67067542 + MGP_AJ_P0050000 Tcf4 protein_coding protein_coding MGP_AJ_T0050001.1 MGP_AJ_G0024505.1 mouse_genomes_project 18 66975560 67016833 + Tcf4 protein_coding retained_intron MGP_AJ_T0050002.1 MGP_AJ_G0024505.1 mouse_genomes_project 18 66975560 66979576 + Tcf4 protein_coding retained_intron MGP_AJ_T0050003.1 MGP_AJ_G0024505.1 mouse_genomes_project 18 66975577 67040854 + Tcf4 protein_coding processed_transcript MGP_AJ_T0050004.1 MGP_AJ_G0024505.1 mouse_genomes_project 18 66975716 67034286 + MGP_AJ_P0050004 Tcf4 protein_coding protein_coding MGP_AJ_T0050005.1 MGP_AJ_G0024505.1 mouse_genomes_project 18 66976315 67040752 + MGP_AJ_P0050005 Tcf4 protein_coding protein_coding MGP_AJ_T0050006.1 MGP_AJ_G0024505.1 mouse_genomes_project 18 66981667 67035453 + MGP_AJ_P0050006 Tcf4 protein_coding protein_coding MGP_AJ_T0050007.1 MGP_AJ_G0024505.1 mouse_genomes_project 18 66994868 67066213 + MGP_AJ_P0050007 Tcf4 protein_coding protein_coding MGP_AJ_T0050008.1 MGP_AJ_G0024505.1 mouse_genomes_project 18 67039653 67043278 + Tcf4 protein_coding retained_intron MGP_AJ_T0050009.1 MGP_AJ_G0024505.1 mouse_genomes_project 18 67062712 67067542 + Tcf4 protein_coding retained_intron MGP_AJ_T0050010.1 MGP_AJ_G0024505.1 mouse_genomes_project 18 67065394 67066648 + Tcf4 protein_coding retained_intron MGP_AJ_T0050216.1 MGP_AJ_G0024571.1 mouse_genomes_project 18 81398544 81473516 - MGP_AJ_P0050216 Tshz1 protein_coding protein_coding MGP_AJ_T0050217.1 MGP_AJ_G0024571.1 mouse_genomes_project 18 81398999 81473502 - Tshz1 protein_coding processed_transcript MGP_AJ_T0049230.1 MGP_AJ_G0024214.1 mouse_genomes_project 18 31847487 31865990 - MGP_AJ_P0049230 Cdc25c protein_coding protein_coding MGP_AJ_T0048969.1 MGP_AJ_G0024111.1 mouse_genomes_project 18 7511704 7522107 + MGP_AJ_P0048969 Snrpd1 protein_coding protein_coding MGP_AJ_T0049511.1 MGP_AJ_G0024334.1 mouse_genomes_project 18 36034427 36114015 - MGP_AJ_P0049511 Fgf1 protein_coding protein_coding MGP_AJ_T0049512.1 MGP_AJ_G0024334.1 mouse_genomes_project 18 36034429 36124587 - MGP_AJ_P0049512 Fgf1 protein_coding nonsense_mediated_decay MGP_AJ_T0049513.1 MGP_AJ_G0024334.1 mouse_genomes_project 18 36035931 36062021 - MGP_AJ_P0049513 Fgf1 protein_coding protein_coding MGP_AJ_T0049514.1 MGP_AJ_G0024334.1 mouse_genomes_project 18 36037661 36054022 - MGP_AJ_P0049514 Fgf1 protein_coding protein_coding MGP_AJ_T0049515.1 MGP_AJ_G0024334.1 mouse_genomes_project 18 36042516 36061406 - MGP_AJ_P0049515 Fgf1 protein_coding protein_coding MGP_AJ_T0049516.1 MGP_AJ_G0024334.1 mouse_genomes_project 18 36042557 36054135 - Fgf1 protein_coding retained_intron MGP_AJ_T0049517.1 MGP_AJ_G0024334.1 mouse_genomes_project 18 36053841 36124338 - MGP_AJ_P0049517 Fgf1 protein_coding protein_coding MGP_AJ_T0049826.1 MGP_AJ_G0024454.1 mouse_genomes_project 18 59211848 59273130 + MGP_AJ_P0049826 Sh3tc2 protein_coding protein_coding MGP_AJ_T0049557.1 MGP_AJ_G0024349.1 mouse_genomes_project 18 39791700 39793333 - MGP_AJ_P0049557 Gpr151 protein_coding protein_coding MGP_AJ_T0003796.1 MGP_AJ_G0003408.1 mouse_genomes_project 18 7672185 7676346 - Mir133a-1hg antisense antisense MGP_AJ_T0049076.1 MGP_AJ_G0024156.1 mouse_genomes_project 18 19810513 20155432 - MGP_AJ_P0049076 Nol4 protein_coding protein_coding MGP_AJ_T0049077.1 MGP_AJ_G0024156.1 mouse_genomes_project 18 19810523 19977091 - MGP_AJ_P0049077 Nol4 protein_coding protein_coding MGP_AJ_T0049078.1 MGP_AJ_G0024156.1 mouse_genomes_project 18 19810723 20154046 - MGP_AJ_P0049078 Nol4 protein_coding protein_coding MGP_AJ_T0049079.1 MGP_AJ_G0024156.1 mouse_genomes_project 18 19811640 19977091 - MGP_AJ_P0049079 Nol4 protein_coding protein_coding MGP_AJ_T0049080.1 MGP_AJ_G0024156.1 mouse_genomes_project 18 19811866 20155468 - MGP_AJ_P0049080 Nol4 protein_coding protein_coding MGP_AJ_T0049081.1 MGP_AJ_G0024156.1 mouse_genomes_project 18 19952115 19958883 - Nol4 protein_coding processed_transcript MGP_AJ_T0049082.1 MGP_AJ_G0024156.1 mouse_genomes_project 18 20031884 20154329 - MGP_AJ_P0049082 Nol4 protein_coding protein_coding MGP_AJ_T0049083.1 MGP_AJ_G0024156.1 mouse_genomes_project 18 20041070 20077775 - Nol4 protein_coding processed_transcript MGP_AJ_T0049136.1 MGP_AJ_G0024175.1 mouse_genomes_project 18 27390215 27466210 + MGP_AJ_P0049136 Pik3c3 protein_coding protein_coding MGP_AJ_T0049137.1 MGP_AJ_G0024175.1 mouse_genomes_project 18 27390338 27449054 + MGP_AJ_P0049137 Pik3c3 protein_coding protein_coding MGP_AJ_T0049138.1 MGP_AJ_G0024175.1 mouse_genomes_project 18 27390340 27461200 + MGP_AJ_P0049138 Pik3c3 protein_coding protein_coding MGP_AJ_T0049139.1 MGP_AJ_G0024175.1 mouse_genomes_project 18 27390395 27466204 + MGP_AJ_P0049139 Pik3c3 protein_coding nonsense_mediated_decay MGP_AJ_T0049952.1 MGP_AJ_G0024504.1 mouse_genomes_project 18 66313777 66319292 - MGP_AJ_P0049952 4930546C10Rik protein_coding protein_coding MGP_AJ_T0048942.1 MGP_AJ_G0024099.1 mouse_genomes_project 18 5137968 5139189 - MGP_AJ_P0048942 Gm12355 protein_coding protein_coding MGP_AJ_T0049394.1 MGP_AJ_G0024275.1 mouse_genomes_project 18 34258653 34357515 + MGP_AJ_P0049394 Pcdhac1 protein_coding protein_coding MGP_AJ_T0049063.1 MGP_AJ_G0024149.1 mouse_genomes_project 18 18085578 18111398 + MGP_AJ_P0049063 Rnf125 protein_coding protein_coding MGP_AJ_T0011465.1 MGP_AJ_G0009587.1 mouse_genomes_project 18 67161154 67161264 - Gm22508 misc_RNA misc_RNA MGP_AJ_T0099707.1 MGP_AJ_G0037673.1 mouse_genomes_project 18 62063805 62063905 - Gm24504 snRNA snRNA MGP_AJ_T0099683.1 MGP_AJ_G0037649.1 mouse_genomes_project 18 9168125 9168244 + Gm25289 snRNA snRNA MGP_AJ_T0050075.1 MGP_AJ_G0024526.1 mouse_genomes_project 18 72139490 72167084 + MGP_AJ_P0050075 Acaa2 protein_coding protein_coding MGP_AJ_T0100964.1 MGP_AJ_G0038930.1 mouse_genomes_project 18 55812744 55812875 - Gm23270 snoRNA snoRNA MGP_AJ_T0003841.1 MGP_AJ_G0003441.1 mouse_genomes_project 18 82254153 82255065 - Gm16146 antisense antisense MGP_AJ_T0048972.1 MGP_AJ_G0024113.1 mouse_genomes_project 18 7616192 7709042 + MGP_AJ_P0048972 Mib1 protein_coding protein_coding MGP_AJ_T0048973.1 MGP_AJ_G0024113.1 mouse_genomes_project 18 7616299 7702638 + MGP_AJ_P0048973 Mib1 protein_coding protein_coding MGP_AJ_T0048974.1 MGP_AJ_G0024113.1 mouse_genomes_project 18 7616388 7646188 + Mib1 protein_coding retained_intron MGP_AJ_T0048975.1 MGP_AJ_G0024113.1 mouse_genomes_project 18 7651291 7709168 + MGP_AJ_P0048975 Mib1 protein_coding protein_coding MGP_AJ_T0048976.1 MGP_AJ_G0024113.1 mouse_genomes_project 18 7688827 7708092 + MGP_AJ_P0048976 Mib1 protein_coding protein_coding MGP_AJ_T0003807.1 MGP_AJ_G0003416.1 mouse_genomes_project 18 34110050 34111244 - Gm37751 antisense antisense MGP_AJ_T0007020.1 MGP_AJ_G0005768.1 mouse_genomes_project 18 30050150 30073553 - 2310026I22Rik lincRNA lincRNA MGP_AJ_T0049208.1 MGP_AJ_G0024209.1 mouse_genomes_project 18 31693206 31711279 - MGP_AJ_P0049208 4933408B17Rik protein_coding protein_coding MGP_AJ_T0049209.1 MGP_AJ_G0024209.1 mouse_genomes_project 18 31693305 31711156 - MGP_AJ_P0049209 4933408B17Rik protein_coding nonsense_mediated_decay MGP_AJ_T0048944.1 MGP_AJ_G0024101.1 mouse_genomes_project 18 6183472 6187659 - MGP_AJ_P0048944 Gjd4 protein_coding protein_coding MGP_AJ_T0007045.1 MGP_AJ_G0005785.1 mouse_genomes_project 18 60686917 60708138 + Gm26972 lincRNA lincRNA MGP_AJ_T0049950.1 MGP_AJ_G0024502.1 mouse_genomes_project 18 65709186 65711295 + MGP_AJ_P0049950 Mc5r protein_coding protein_coding MGP_AJ_T0007039.1 MGP_AJ_G0005782.1 mouse_genomes_project 18 58896694 58904371 + Bvht lincRNA lincRNA MGP_AJ_T0007040.1 MGP_AJ_G0005782.1 mouse_genomes_project 18 58896805 58904551 + Bvht lincRNA lincRNA MGP_AJ_T0050242.1 MGP_AJ_G0024580.1 mouse_genomes_project 18 83772594 83881232 + MGP_AJ_P0050242 Neto1 protein_coding protein_coding MGP_AJ_T0013330.1 MGP_AJ_G0011425.1 mouse_genomes_project 18 32927511 32927862 + processed_pseudogene processed_pseudogene MGP_AJ_T0049583.1 MGP_AJ_G0024361.1 mouse_genomes_project 18 41373474 41376927 - MGP_AJ_P0049583 Gm10267 protein_coding protein_coding MGP_AJ_T0049584.1 MGP_AJ_G0024361.1 mouse_genomes_project 18 41373483 41376367 - MGP_AJ_P0049584 Gm10267 protein_coding protein_coding MGP_AJ_T0049101.1 MGP_AJ_G0024163.1 mouse_genomes_project 18 21233365 21251312 - MGP_AJ_P0049101 Ino80c protein_coding protein_coding MGP_AJ_T0049102.1 MGP_AJ_G0024163.1 mouse_genomes_project 18 21233371 21251463 - MGP_AJ_P0049102 Ino80c protein_coding protein_coding MGP_AJ_T0049103.1 MGP_AJ_G0024163.1 mouse_genomes_project 18 21234988 21251346 - MGP_AJ_P0049103 Ino80c protein_coding protein_coding MGP_AJ_T0010268.1 MGP_AJ_G0008390.1 mouse_genomes_project 18 66395702 66395777 - Mir145b miRNA miRNA MGP_AJ_T0049427.1 MGP_AJ_G0024304.1 mouse_genomes_project 18 34844041 35011791 + MGP_AJ_P0049427 Pcdhgb1 protein_coding protein_coding MGP_AJ_T0049428.1 MGP_AJ_G0024304.1 mouse_genomes_project 18 34844065 34850548 + Pcdhgb1 protein_coding processed_transcript MGP_AJ_T0010229.1 MGP_AJ_G0008351.1 mouse_genomes_project 18 2498801 2498910 + Gm22709 miRNA miRNA MGP_AJ_T0013315.1 MGP_AJ_G0011410.1 mouse_genomes_project 18 9294065 9296686 + processed_pseudogene processed_pseudogene MGP_AJ_T0049405.1 MGP_AJ_G0024284.1 mouse_genomes_project 18 34541903 34543388 + MGP_AJ_P0049405 Pcdhb8 protein_coding protein_coding MGP_AJ_T0049406.1 MGP_AJ_G0024284.1 mouse_genomes_project 18 34542053 34545387 + MGP_AJ_P0049406 Pcdhb8 protein_coding protein_coding MGP_AJ_T0001009.1 MGP_AJ_G0000940.1 mouse_genomes_project 18 62895424 62896684 + TEC TEC MGP_AJ_T0049124.1 MGP_AJ_G0024173.1 mouse_genomes_project 18 22316327 22607930 + MGP_AJ_P0049124 AW554918 protein_coding nonsense_mediated_decay MGP_AJ_T0049125.1 MGP_AJ_G0024173.1 mouse_genomes_project 18 22316338 22611521 + MGP_AJ_P0049125 AW554918 protein_coding protein_coding MGP_AJ_T0049126.1 MGP_AJ_G0024173.1 mouse_genomes_project 18 22316342 22340592 + AW554918 protein_coding processed_transcript MGP_AJ_T0049127.1 MGP_AJ_G0024173.1 mouse_genomes_project 18 22316348 22435803 + AW554918 protein_coding processed_transcript MGP_AJ_T0049128.1 MGP_AJ_G0024173.1 mouse_genomes_project 18 22316348 22611526 + MGP_AJ_P0049128 AW554918 protein_coding protein_coding MGP_AJ_T0049129.1 MGP_AJ_G0024173.1 mouse_genomes_project 18 22316348 22611526 + MGP_AJ_P0049129 AW554918 protein_coding protein_coding MGP_AJ_T0049130.1 MGP_AJ_G0024173.1 mouse_genomes_project 18 22316351 22608101 + MGP_AJ_P0049130 AW554918 protein_coding nonsense_mediated_decay MGP_AJ_T0049131.1 MGP_AJ_G0024173.1 mouse_genomes_project 18 22379863 22608297 + MGP_AJ_P0049131 AW554918 protein_coding protein_coding MGP_AJ_T0050192.1 MGP_AJ_G0024566.1 mouse_genomes_project 18 78322302 78342510 - MGP_AJ_P0050192 Sall3 protein_coding protein_coding MGP_AJ_T0007023.1 MGP_AJ_G0005770.1 mouse_genomes_project 18 31866265 31871631 + 2010110K18Rik lincRNA lincRNA MGP_AJ_T0007024.1 MGP_AJ_G0005770.1 mouse_genomes_project 18 31866368 31873623 + 2010110K18Rik lincRNA lincRNA MGP_AJ_T0049444.1 MGP_AJ_G0024314.1 mouse_genomes_project 18 34910221 35011794 + MGP_AJ_P0049444 protein_coding protein_coding MGP_AJ_T0049421.1 MGP_AJ_G0024299.1 mouse_genomes_project 18 34800689 34802058 - MGP_AJ_P0049421 Slc25a2 protein_coding protein_coding MGP_AJ_T0050059.1 MGP_AJ_G0024523.1 mouse_genomes_project 18 71626683 71636595 + MGP_AJ_P0050059 Mbd1 protein_coding unknown_likely_coding MGP_AJ_T0050060.1 MGP_AJ_G0024523.1 mouse_genomes_project 18 71627284 71641725 + MGP_AJ_P0050060 Mbd1 protein_coding protein_coding MGP_AJ_T0098793.1 MGP_AJ_G0036777.1 mouse_genomes_project 18 24067360 24067588 - Gm26106 ribozyme ribozyme MGP_AJ_T0007051.1 MGP_AJ_G0005791.1 mouse_genomes_project 18 75107408 75111198 - A330094K24Rik lincRNA lincRNA MGP_AJ_T0010251.1 MGP_AJ_G0008373.1 mouse_genomes_project 18 53381862 53382047 + Gm25476 miRNA miRNA MGP_AJ_T0049830.1 MGP_AJ_G0024458.1 mouse_genomes_project 18 59765416 59810798 - MGP_AJ_P0049830 Fbxo38 protein_coding protein_coding MGP_AJ_T0049829.1 MGP_AJ_G0024457.1 mouse_genomes_project 18 59588120 59729615 + MGP_AJ_P0049829 Htr4 protein_coding protein_coding MGP_AJ_T0050190.1 MGP_AJ_G0024565.1 mouse_genomes_project 18 78091063 78289170 - MGP_AJ_P0050190 Atp9b protein_coding protein_coding MGP_AJ_T0050191.1 MGP_AJ_G0024565.1 mouse_genomes_project 18 78091304 78289051 - MGP_AJ_P0050191 Atp9b protein_coding unknown_likely_coding MGP_AJ_T0049028.1 MGP_AJ_G0024129.1 mouse_genomes_project 18 11437960 11438404 + MGP_AJ_P0049028 Gm5160 protein_coding protein_coding MGP_AJ_T0049817.1 MGP_AJ_G0024450.1 mouse_genomes_project 18 58953698 58965023 - MGP_AJ_P0049817 Pcyox1l protein_coding protein_coding MGP_AJ_T0049818.1 MGP_AJ_G0024450.1 mouse_genomes_project 18 58956342 58965001 - MGP_AJ_P0049818 Pcyox1l protein_coding nonsense_mediated_decay MGP_AJ_T0049819.1 MGP_AJ_G0024450.1 mouse_genomes_project 18 58960272 58965023 - Pcyox1l protein_coding retained_intron MGP_AJ_T0049232.1 MGP_AJ_G0024216.1 mouse_genomes_project 18 31873843 31888698 + MGP_AJ_P0049232 Fam53c protein_coding protein_coding MGP_AJ_T0049233.1 MGP_AJ_G0024216.1 mouse_genomes_project 18 31874493 31888676 + MGP_AJ_P0049233 Fam53c protein_coding protein_coding MGP_AJ_T0049361.1 MGP_AJ_G0024258.1 mouse_genomes_project 18 33958184 33965812 + Hars2 protein_coding processed_transcript MGP_AJ_T0049362.1 MGP_AJ_G0024258.1 mouse_genomes_project 18 33958184 33967756 + MGP_AJ_P0049362 Hars2 protein_coding protein_coding MGP_AJ_T0049363.1 MGP_AJ_G0024258.1 mouse_genomes_project 18 33958407 33966888 + MGP_AJ_P0049363 Hars2 protein_coding protein_coding MGP_AJ_T0049364.1 MGP_AJ_G0024258.1 mouse_genomes_project 18 33958445 33961651 + Hars2 protein_coding retained_intron MGP_AJ_T0049365.1 MGP_AJ_G0024258.1 mouse_genomes_project 18 33962208 33963456 + Hars2 protein_coding retained_intron MGP_AJ_T0049366.1 MGP_AJ_G0024258.1 mouse_genomes_project 18 33963013 33965353 + Hars2 protein_coding retained_intron MGP_AJ_T0049367.1 MGP_AJ_G0024258.1 mouse_genomes_project 18 33965206 33966647 + Hars2 protein_coding retained_intron MGP_AJ_T0011455.1 MGP_AJ_G0009577.1 mouse_genomes_project 18 35782866 35782985 + Gm27804 misc_RNA misc_RNA MGP_AJ_T0011457.1 MGP_AJ_G0009579.1 mouse_genomes_project 18 38186346 38186620 + Gm22483 misc_RNA misc_RNA MGP_AJ_T0013321.1 MGP_AJ_G0011416.1 mouse_genomes_project 18 12056105 12056552 + processed_pseudogene processed_pseudogene MGP_AJ_T0049248.1 MGP_AJ_G0024225.1 mouse_genomes_project 18 32667796 32668165 + MGP_AJ_P0049248 Gm5239 protein_coding protein_coding MGP_AJ_T0010239.1 MGP_AJ_G0008361.1 mouse_genomes_project 18 21570940 21571001 - Mir187 miRNA miRNA MGP_AJ_T0013329.1 MGP_AJ_G0011424.1 mouse_genomes_project 18 29159525 29159683 + processed_pseudogene processed_pseudogene MGP_AJ_T0049401.1 MGP_AJ_G0024281.1 mouse_genomes_project 18 34507813 34511346 + MGP_AJ_P0049401 Pcdhb5 protein_coding protein_coding MGP_AJ_T0013317.1 MGP_AJ_G0011412.1 mouse_genomes_project 18 9364315 9364746 + processed_pseudogene processed_pseudogene MGP_AJ_T0007027.1 MGP_AJ_G0005773.1 mouse_genomes_project 18 34818765 34825078 + 3222401L13Rik lincRNA lincRNA MGP_AJ_T0007028.1 MGP_AJ_G0005773.1 mouse_genomes_project 18 34819222 34822071 + 3222401L13Rik lincRNA lincRNA MGP_AJ_T0013322.1 MGP_AJ_G0011417.1 mouse_genomes_project 18 13903671 13904312 - processed_pseudogene processed_pseudogene MGP_AJ_T0010263.1 MGP_AJ_G0008385.1 mouse_genomes_project 18 58906274 58906337 - Mir143 miRNA miRNA MGP_AJ_T0010246.1 MGP_AJ_G0008368.1 mouse_genomes_project 18 35144200 35144315 - Mir6981 miRNA miRNA MGP_AJ_T0099686.1 MGP_AJ_G0037652.1 mouse_genomes_project 18 18514810 18514917 - Gm22886 snRNA snRNA MGP_AJ_T0013357.1 MGP_AJ_G0011452.1 mouse_genomes_project 18 58012698 58013226 - processed_pseudogene processed_pseudogene MGP_AJ_T0050086.1 MGP_AJ_G0024533.1 mouse_genomes_project 18 73202078 73524318 + MGP_AJ_P0050086 Zbtb7c protein_coding protein_coding MGP_AJ_T0050087.1 MGP_AJ_G0024533.1 mouse_genomes_project 18 73436442 73522197 + MGP_AJ_P0050087 Zbtb7c protein_coding protein_coding MGP_AJ_T0050186.1 MGP_AJ_G0024564.1 mouse_genomes_project 18 77961795 78065188 - MGP_AJ_P0050186 Nfatc1 protein_coding protein_coding MGP_AJ_T0050187.1 MGP_AJ_G0024564.1 mouse_genomes_project 18 77961795 78070099 - MGP_AJ_P0050187 Nfatc1 protein_coding protein_coding MGP_AJ_T0050188.1 MGP_AJ_G0024564.1 mouse_genomes_project 18 77961795 78070099 - MGP_AJ_P0050188 Nfatc1 protein_coding protein_coding MGP_AJ_T0050189.1 MGP_AJ_G0024564.1 mouse_genomes_project 18 78003960 78065188 - MGP_AJ_P0050189 Nfatc1 protein_coding protein_coding MGP_AJ_T0003813.1 MGP_AJ_G0003422.1 mouse_genomes_project 18 34825287 34825968 - Gm37118 antisense antisense MGP_AJ_T0049586.1 MGP_AJ_G0024363.1 mouse_genomes_project 18 41405828 41412007 - MGP_AJ_P0049586 Spink11 protein_coding protein_coding MGP_AJ_T0049587.1 MGP_AJ_G0024363.1 mouse_genomes_project 18 41406238 41408129 - Spink11 protein_coding retained_intron MGP_AJ_T0049676.1 MGP_AJ_G0024398.1 mouse_genomes_project 18 49907339 49977500 + MGP_AJ_P0049676 Sncaip protein_coding protein_coding MGP_AJ_T0049677.1 MGP_AJ_G0024398.1 mouse_genomes_project 18 49976793 50048922 + MGP_AJ_P0049677 Sncaip protein_coding protein_coding MGP_AJ_T0049678.1 MGP_AJ_G0024398.1 mouse_genomes_project 18 49977423 50048926 + MGP_AJ_P0049678 Sncaip protein_coding nonsense_mediated_decay MGP_AJ_T0049679.1 MGP_AJ_G0024398.1 mouse_genomes_project 18 49977423 50048926 + MGP_AJ_P0049679 Sncaip protein_coding nonsense_mediated_decay MGP_AJ_T0049680.1 MGP_AJ_G0024398.1 mouse_genomes_project 18 49977423 50048633 + MGP_AJ_P0049680 Sncaip protein_coding nonsense_mediated_decay MGP_AJ_T0049681.1 MGP_AJ_G0024398.1 mouse_genomes_project 18 49977469 50048359 + MGP_AJ_P0049681 Sncaip protein_coding protein_coding MGP_AJ_T0049682.1 MGP_AJ_G0024398.1 mouse_genomes_project 18 49977469 50048359 + MGP_AJ_P0049682 Sncaip protein_coding protein_coding MGP_AJ_T0013366.1 MGP_AJ_G0011461.1 mouse_genomes_project 18 87241666 87242626 - processed_pseudogene processed_pseudogene MGP_AJ_T0049790.1 MGP_AJ_G0024441.1 mouse_genomes_project 18 58291465 58331831 + MGP_AJ_P0049790 Pdgfrb protein_coding protein_coding MGP_AJ_T0049791.1 MGP_AJ_G0024441.1 mouse_genomes_project 18 58291515 58331826 + MGP_AJ_P0049791 Pdgfrb protein_coding protein_coding MGP_AJ_T0049792.1 MGP_AJ_G0024441.1 mouse_genomes_project 18 58291687 58331834 + MGP_AJ_P0049792 Pdgfrb protein_coding unknown_likely_coding MGP_AJ_T0011453.1 MGP_AJ_G0009575.1 mouse_genomes_project 18 33977150 33977293 + Vaultrc5 misc_RNA misc_RNA MGP_AJ_T0048948.1 MGP_AJ_G0024105.1 mouse_genomes_project 18 6608201 6608675 - MGP_AJ_P0048948 Gm17430 protein_coding protein_coding MGP_AJ_T0049673.1 MGP_AJ_G0024396.1 mouse_genomes_project 18 49779294 49798434 + MGP_AJ_P0049673 1700034E13Rik protein_coding protein_coding MGP_AJ_T0049674.1 MGP_AJ_G0024396.1 mouse_genomes_project 18 49779301 49798434 + MGP_AJ_P0049674 1700034E13Rik protein_coding protein_coding MGP_AJ_T0048884.1 MGP_AJ_G0024089.1 mouse_genomes_project 18 2476285 2651363 + MGP_AJ_P0048884 Zeb1 protein_coding protein_coding MGP_AJ_T0048885.1 MGP_AJ_G0024089.1 mouse_genomes_project 18 2476297 2591886 + Zeb1 protein_coding retained_intron MGP_AJ_T0048886.1 MGP_AJ_G0024089.1 mouse_genomes_project 18 2476316 2642812 + MGP_AJ_P0048886 Zeb1 protein_coding nonsense_mediated_decay MGP_AJ_T0048887.1 MGP_AJ_G0024089.1 mouse_genomes_project 18 2476316 2642429 + MGP_AJ_P0048887 Zeb1 protein_coding protein_coding MGP_AJ_T0048888.1 MGP_AJ_G0024089.1 mouse_genomes_project 18 2476337 2642466 + MGP_AJ_P0048888 Zeb1 protein_coding nonsense_mediated_decay MGP_AJ_T0048889.1 MGP_AJ_G0024089.1 mouse_genomes_project 18 2477733 2526151 + Zeb1 protein_coding processed_transcript MGP_AJ_T0048890.1 MGP_AJ_G0024089.1 mouse_genomes_project 18 2478027 2632759 + MGP_AJ_P0048890 Zeb1 protein_coding protein_coding MGP_AJ_T0048891.1 MGP_AJ_G0024089.1 mouse_genomes_project 18 2478286 2632886 + Zeb1 protein_coding processed_transcript MGP_AJ_T0048892.1 MGP_AJ_G0024089.1 mouse_genomes_project 18 2478628 2643638 + Zeb1 protein_coding retained_intron MGP_AJ_T0048893.1 MGP_AJ_G0024089.1 mouse_genomes_project 18 2488270 2527565 + Zeb1 protein_coding processed_transcript MGP_AJ_T0048894.1 MGP_AJ_G0024089.1 mouse_genomes_project 18 2518012 2651367 + MGP_AJ_P0048894 Zeb1 protein_coding unknown_likely_coding MGP_AJ_T0048895.1 MGP_AJ_G0024089.1 mouse_genomes_project 18 2629051 2648700 + Zeb1 protein_coding processed_transcript MGP_AJ_T0099704.1 MGP_AJ_G0037670.1 mouse_genomes_project 18 60860728 60860833 + Gm24848 snRNA snRNA MGP_AJ_T0049059.1 MGP_AJ_G0024147.1 mouse_genomes_project 18 17808052 17870351 - MGP_AJ_P0049059 B4galt6 protein_coding protein_coding MGP_AJ_T0011467.1 MGP_AJ_G0009589.1 mouse_genomes_project 18 75190292 75190645 - Gm23954 misc_RNA misc_RNA MGP_AJ_T0001001.1 MGP_AJ_G0000932.1 mouse_genomes_project 18 32713037 32715197 + TEC TEC MGP_AJ_T0100971.1 MGP_AJ_G0038937.1 mouse_genomes_project 18 72365400 72365465 + Gm26202 snoRNA snoRNA MGP_AJ_T0049299.1 MGP_AJ_G0024237.1 mouse_genomes_project 18 32928750 32966557 + MGP_AJ_P0049299 Ube2d2a protein_coding protein_coding MGP_AJ_T0049300.1 MGP_AJ_G0024237.1 mouse_genomes_project 18 32928793 32966548 + MGP_AJ_P0049300 Ube2d2a protein_coding protein_coding MGP_AJ_T0007041.1 MGP_AJ_G0005783.1 mouse_genomes_project 18 58906701 58922571 - Carmn lincRNA lincRNA MGP_AJ_T0007042.1 MGP_AJ_G0005783.1 mouse_genomes_project 18 58908050 58922618 - Carmn lincRNA lincRNA MGP_AJ_T0049159.1 MGP_AJ_G0024189.1 mouse_genomes_project 18 29186438 29223576 + MGP_AJ_P0049159 Iws1 protein_coding protein_coding MGP_AJ_T0003837.1 MGP_AJ_G0003438.1 mouse_genomes_project 18 71893132 71899811 - 1700120E14Rik antisense antisense MGP_AJ_T0003838.1 MGP_AJ_G0003438.1 mouse_genomes_project 18 71893245 71899793 - 1700120E14Rik antisense antisense MGP_AJ_T0100974.1 MGP_AJ_G0038940.1 mouse_genomes_project 18 79368316 79368444 + Gm26012 snoRNA snoRNA MGP_AJ_T0010254.1 MGP_AJ_G0008376.1 mouse_genomes_project 18 56775628 56775734 + Mir6355 miRNA miRNA MGP_AJ_T0013356.1 MGP_AJ_G0011451.1 mouse_genomes_project 18 57422690 57423906 + processed_pseudogene processed_pseudogene MGP_AJ_T0013311.1 MGP_AJ_G0011406.1 mouse_genomes_project 18 6629890 6630893 + processed_pseudogene processed_pseudogene MGP_AJ_T0049624.1 MGP_AJ_G0024380.1 mouse_genomes_project 18 43924163 43969531 + MGP_AJ_P0049624 Ap3s1 protein_coding protein_coding MGP_AJ_T0001012.1 MGP_AJ_G0000943.1 mouse_genomes_project 18 81764148 81767626 - TEC TEC MGP_AJ_T0003827.1 MGP_AJ_G0003434.1 mouse_genomes_project 18 58983767 58985634 + 1500015A07Rik antisense antisense MGP_AJ_T0003828.1 MGP_AJ_G0003434.1 mouse_genomes_project 18 58983810 58993222 + 1500015A07Rik antisense antisense MGP_AJ_T0003829.1 MGP_AJ_G0003434.1 mouse_genomes_project 18 58991663 58993214 + 1500015A07Rik antisense antisense MGP_AJ_T0049352.1 MGP_AJ_G0024252.1 mouse_genomes_project 18 33908503 33916454 + MGP_AJ_P0049352 Tmco6 protein_coding protein_coding MGP_AJ_T0048964.1 MGP_AJ_G0024110.1 mouse_genomes_project 18 7459454 7487051 - Esco1 protein_coding processed_transcript MGP_AJ_T0048965.1 MGP_AJ_G0024110.1 mouse_genomes_project 18 7459463 7504104 - MGP_AJ_P0048965 Esco1 protein_coding protein_coding MGP_AJ_T0048966.1 MGP_AJ_G0024110.1 mouse_genomes_project 18 7459471 7504084 - MGP_AJ_P0048966 Esco1 protein_coding protein_coding MGP_AJ_T0048967.1 MGP_AJ_G0024110.1 mouse_genomes_project 18 7459488 7504084 - Esco1 protein_coding processed_transcript MGP_AJ_T0048968.1 MGP_AJ_G0024110.1 mouse_genomes_project 18 7460543 7504094 - MGP_AJ_P0048968 Esco1 protein_coding protein_coding MGP_AJ_T0003830.1 MGP_AJ_G0003435.1 mouse_genomes_project 18 61434423 61550331 - St8sia3os antisense antisense MGP_AJ_T0003831.1 MGP_AJ_G0003435.1 mouse_genomes_project 18 61477855 61550331 - St8sia3os antisense antisense MGP_AJ_T0003832.1 MGP_AJ_G0003435.1 mouse_genomes_project 18 61540796 61550322 - St8sia3os antisense antisense MGP_AJ_T0003833.1 MGP_AJ_G0003435.1 mouse_genomes_project 18 61548625 61550308 - St8sia3os antisense antisense MGP_AJ_T0013353.1 MGP_AJ_G0011448.1 mouse_genomes_project 18 52876024 52877002 - processed_pseudogene processed_pseudogene MGP_AJ_T0049320.1 MGP_AJ_G0024245.1 mouse_genomes_project 18 33696793 33709925 + MGP_AJ_P0049320 Slc4a9 protein_coding protein_coding MGP_AJ_T0049321.1 MGP_AJ_G0024245.1 mouse_genomes_project 18 33696793 33709925 + MGP_AJ_P0049321 Slc4a9 protein_coding protein_coding MGP_AJ_T0050094.1 MGP_AJ_G0024536.1 mouse_genomes_project 18 74257767 74269346 + MGP_AJ_P0050094 Ier3ip1 protein_coding protein_coding MGP_AJ_T0050095.1 MGP_AJ_G0024536.1 mouse_genomes_project 18 74257795 74269346 + Ier3ip1 protein_coding processed_transcript MGP_AJ_T0050096.1 MGP_AJ_G0024536.1 mouse_genomes_project 18 74257813 74267489 + Ier3ip1 protein_coding retained_intron MGP_AJ_T0050098.1 MGP_AJ_G0024536.1 mouse_genomes_project 18 74267024 74268430 + Ier3ip1 protein_coding retained_intron MGP_AJ_T0049909.1 MGP_AJ_G0024482.1 mouse_genomes_project 18 63281739 63303337 - MGP_AJ_P0049909 Lman1 protein_coding protein_coding MGP_AJ_T0049910.1 MGP_AJ_G0024482.1 mouse_genomes_project 18 63284181 63303321 - MGP_AJ_P0049910 Lman1 protein_coding protein_coding MGP_AJ_T0049911.1 MGP_AJ_G0024482.1 mouse_genomes_project 18 63289728 63295605 - Lman1 protein_coding processed_transcript MGP_AJ_T0049912.1 MGP_AJ_G0024482.1 mouse_genomes_project 18 63291853 63294362 - Lman1 protein_coding retained_intron MGP_AJ_T0049913.1 MGP_AJ_G0024482.1 mouse_genomes_project 18 63293839 63323322 - MGP_AJ_P0049913 Lman1 protein_coding protein_coding MGP_AJ_T0049914.1 MGP_AJ_G0024482.1 mouse_genomes_project 18 63294292 63320515 - Lman1 protein_coding processed_transcript MGP_AJ_T0011452.1 MGP_AJ_G0009574.1 mouse_genomes_project 18 29415538 29415846 + Gm22325 misc_RNA misc_RNA MGP_AJ_T0049577.1 MGP_AJ_G0024357.1 mouse_genomes_project 18 41192416 41251568 + MGP_AJ_P0049577 Spink5 protein_coding protein_coding MGP_AJ_T0049578.1 MGP_AJ_G0024357.1 mouse_genomes_project 18 41195391 41219658 + MGP_AJ_P0049578 Spink5 protein_coding unknown_likely_coding MGP_AJ_T0048868.1 MGP_AJ_G0024086.1 mouse_genomes_project 18 1513303 1559116 + MGP_AJ_P0048868 9430020K01Rik protein_coding protein_coding MGP_AJ_T0048980.1 MGP_AJ_G0024116.1 mouse_genomes_project 18 8840842 8946905 + MGP_AJ_P0048980 Cables1 protein_coding protein_coding MGP_AJ_T0003840.1 MGP_AJ_G0003440.1 mouse_genomes_project 18 78343395 78344515 + Gm27239 antisense antisense MGP_AJ_T0010236.1 MGP_AJ_G0008358.1 mouse_genomes_project 18 7675943 7676015 - Mir1a-2 miRNA miRNA MGP_AJ_T0049694.1 MGP_AJ_G0024407.1 mouse_genomes_project 18 53666049 53685187 - Aldh7a1 protein_coding processed_transcript MGP_AJ_T0049695.1 MGP_AJ_G0024407.1 mouse_genomes_project 18 53683064 53733632 - MGP_AJ_P0049695 Aldh7a1 protein_coding protein_coding MGP_AJ_T0049696.1 MGP_AJ_G0024407.1 mouse_genomes_project 18 53684942 53721553 - MGP_AJ_P0049696 Aldh7a1 protein_coding protein_coding MGP_AJ_T0049697.1 MGP_AJ_G0024407.1 mouse_genomes_project 18 53685081 53721534 - MGP_AJ_P0049697 Aldh7a1 protein_coding protein_coding MGP_AJ_T0049698.1 MGP_AJ_G0024407.1 mouse_genomes_project 18 53685087 53721443 - MGP_AJ_P0049698 Aldh7a1 protein_coding nonsense_mediated_decay MGP_AJ_T0049699.1 MGP_AJ_G0024407.1 mouse_genomes_project 18 53690805 53695887 - Aldh7a1 protein_coding retained_intron MGP_AJ_T0049700.1 MGP_AJ_G0024407.1 mouse_genomes_project 18 53695517 53721451 - MGP_AJ_P0049700 Aldh7a1 protein_coding protein_coding MGP_AJ_T0049701.1 MGP_AJ_G0024407.1 mouse_genomes_project 18 53705085 53718650 - Aldh7a1 protein_coding retained_intron MGP_AJ_T0049702.1 MGP_AJ_G0024407.1 mouse_genomes_project 18 53709611 53721422 - MGP_AJ_P0049702 Aldh7a1 protein_coding protein_coding MGP_AJ_T0049664.1 MGP_AJ_G0024388.1 mouse_genomes_project 18 47436975 47441626 + MGP_AJ_P0049664 Fam170a protein_coding protein_coding MGP_AJ_T0010244.1 MGP_AJ_G0008366.1 mouse_genomes_project 18 33986001 33986111 + Gm23424 miRNA miRNA MGP_AJ_T0017616.1 MGP_AJ_G0015336.1 mouse_genomes_project 18 34993202 35010119 + Gm38182 processed_transcript processed_transcript MGP_AJ_T0017617.1 MGP_AJ_G0015336.1 mouse_genomes_project 18 34993471 35009977 + Gm38182 processed_transcript processed_transcript MGP_AJ_T0017618.1 MGP_AJ_G0015336.1 mouse_genomes_project 18 34993682 35010298 + Gm38182 processed_transcript processed_transcript MGP_AJ_T0017619.1 MGP_AJ_G0015336.1 mouse_genomes_project 18 34993767 35010301 + Gm38182 processed_transcript processed_transcript MGP_AJ_T0017620.1 MGP_AJ_G0015336.1 mouse_genomes_project 18 34994062 35010299 + Gm38182 processed_transcript processed_transcript MGP_AJ_T0100968.1 MGP_AJ_G0038934.1 mouse_genomes_project 18 72267615 72267736 - Gm24559 snoRNA snoRNA MGP_AJ_T0017621.1 MGP_AJ_G0015337.1 mouse_genomes_project 18 35380907 35400749 + 2010320O07Rik processed_transcript processed_transcript MGP_AJ_T0048911.1 MGP_AJ_G0024091.1 mouse_genomes_project 18 3082034 3122016 - MGP_AJ_P0048911 Kif5b protein_coding unknown_likely_coding MGP_AJ_T0048912.1 MGP_AJ_G0024091.1 mouse_genomes_project 18 3093680 3104255 - Kif5b protein_coding retained_intron MGP_AJ_T0048913.1 MGP_AJ_G0024091.1 mouse_genomes_project 18 3094803 3122379 - MGP_AJ_P0048913 Kif5b protein_coding protein_coding MGP_AJ_T0048914.1 MGP_AJ_G0024091.1 mouse_genomes_project 18 3101086 3103265 - Kif5b protein_coding retained_intron MGP_AJ_T0048915.1 MGP_AJ_G0024091.1 mouse_genomes_project 18 3122222 3123044 - Kif5b protein_coding processed_transcript MGP_AJ_T0049072.1 MGP_AJ_G0024155.1 mouse_genomes_project 18 19474389 19649092 + MGP_AJ_P0049072 Asxl3 protein_coding unknown_likely_coding MGP_AJ_T0049073.1 MGP_AJ_G0024155.1 mouse_genomes_project 18 19474922 19508942 + Asxl3 protein_coding retained_intron MGP_AJ_T0049074.1 MGP_AJ_G0024155.1 mouse_genomes_project 18 19475128 19653771 + MGP_AJ_P0049074 Asxl3 protein_coding protein_coding MGP_AJ_T0049075.1 MGP_AJ_G0024155.1 mouse_genomes_project 18 19475128 19653559 + MGP_AJ_P0049075 Asxl3 protein_coding protein_coding MGP_AJ_T0011463.1 MGP_AJ_G0009585.1 mouse_genomes_project 18 62719278 62719603 + Gm22567 misc_RNA misc_RNA MGP_AJ_T0049616.1 MGP_AJ_G0024376.1 mouse_genomes_project 18 43740514 43778522 - MGP_AJ_P0049616 Tmed7 protein_coding protein_coding MGP_AJ_T0049618.1 MGP_AJ_G0024376.1 mouse_genomes_project 18 43766716 43778724 - Tmed7 protein_coding retained_intron MGP_AJ_T0049619.1 MGP_AJ_G0024376.1 mouse_genomes_project 18 43768809 43778743 - MGP_AJ_P0049619 Tmed7 protein_coding protein_coding MGP_AJ_T0049933.1 MGP_AJ_G0024496.1 mouse_genomes_project 18 65006779 65069749 - MGP_AJ_P0049933 Ptpn2 protein_coding protein_coding MGP_AJ_T0049934.1 MGP_AJ_G0024496.1 mouse_genomes_project 18 65006780 65069764 - MGP_AJ_P0049934 Ptpn2 protein_coding protein_coding MGP_AJ_T0049935.1 MGP_AJ_G0024496.1 mouse_genomes_project 18 65012571 65069771 - MGP_AJ_P0049935 Ptpn2 protein_coding protein_coding MGP_AJ_T0049936.1 MGP_AJ_G0024496.1 mouse_genomes_project 18 65017261 65032741 - Ptpn2 protein_coding processed_transcript MGP_AJ_T0050064.1 MGP_AJ_G0024525.1 mouse_genomes_project 18 71808963 71986806 + MGP_AJ_P0050064 Myo5b protein_coding protein_coding MGP_AJ_T0050065.1 MGP_AJ_G0024525.1 mouse_genomes_project 18 71808991 71880199 + Myo5b protein_coding processed_transcript MGP_AJ_T0050066.1 MGP_AJ_G0024525.1 mouse_genomes_project 18 71810566 72128395 + MGP_AJ_P0050066 Myo5b protein_coding protein_coding MGP_AJ_T0050067.1 MGP_AJ_G0024525.1 mouse_genomes_project 18 71810634 72028873 + Myo5b protein_coding processed_transcript MGP_AJ_T0050068.1 MGP_AJ_G0024525.1 mouse_genomes_project 18 71810636 72127707 + MGP_AJ_P0050068 Myo5b protein_coding protein_coding MGP_AJ_T0050069.1 MGP_AJ_G0024525.1 mouse_genomes_project 18 72002928 72013578 + Myo5b protein_coding processed_transcript MGP_AJ_T0050070.1 MGP_AJ_G0024525.1 mouse_genomes_project 18 72077222 72086789 + Myo5b protein_coding processed_transcript MGP_AJ_T0050071.1 MGP_AJ_G0024525.1 mouse_genomes_project 18 72083332 72086782 + MGP_AJ_P0050071 Myo5b protein_coding protein_coding MGP_AJ_T0050072.1 MGP_AJ_G0024525.1 mouse_genomes_project 18 72084502 72086780 + Myo5b protein_coding retained_intron MGP_AJ_T0050073.1 MGP_AJ_G0024525.1 mouse_genomes_project 18 72085291 72092171 + Myo5b protein_coding processed_transcript MGP_AJ_T0050074.1 MGP_AJ_G0024525.1 mouse_genomes_project 18 72103444 72128379 + Myo5b protein_coding retained_intron MGP_AJ_T0049751.1 MGP_AJ_G0024431.1 mouse_genomes_project 18 57806463 57821032 - MGP_AJ_P0049751 Myoz3 protein_coding protein_coding MGP_AJ_T0049245.1 MGP_AJ_G0024222.1 mouse_genomes_project 18 32240210 32376846 + MGP_AJ_P0049245 Ctnna1 protein_coding protein_coding MGP_AJ_T0013338.1 MGP_AJ_G0011433.1 mouse_genomes_project 18 35965464 35966316 - processed_pseudogene processed_pseudogene MGP_AJ_T0011450.1 MGP_AJ_G0009572.1 mouse_genomes_project 18 21902238 21902515 + Gm24294 misc_RNA misc_RNA MGP_AJ_T0098636.1 MGP_AJ_G0036620.1 mouse_genomes_project 18 66934281 66934390 + Gm24845 rRNA rRNA MGP_AJ_T0098634.1 MGP_AJ_G0036618.1 mouse_genomes_project 18 60788323 60788443 + Gm22560 rRNA rRNA MGP_AJ_T0049437.1 MGP_AJ_G0024310.1 mouse_genomes_project 18 34888500 35011791 + MGP_AJ_P0049437 Pcdhgb4 protein_coding protein_coding MGP_AJ_T0049438.1 MGP_AJ_G0024310.1 mouse_genomes_project 18 34888514 34897491 + Pcdhgb4 protein_coding processed_transcript MGP_AJ_T0099706.1 MGP_AJ_G0037672.1 mouse_genomes_project 18 62005393 62005455 + Gm23016 snRNA snRNA MGP_AJ_T0049155.1 MGP_AJ_G0024186.1 mouse_genomes_project 18 29059197 29086335 + MGP_AJ_P0049155 Lims2 protein_coding protein_coding MGP_AJ_T0049157.1 MGP_AJ_G0024186.1 mouse_genomes_project 18 29081807 29085706 + MGP_AJ_P0049157 Lims2 protein_coding unknown_likely_coding MGP_AJ_T0100952.1 MGP_AJ_G0038918.1 mouse_genomes_project 18 29755445 29755582 - Gm25826 snoRNA snoRNA MGP_AJ_T0100959.1 MGP_AJ_G0038925.1 mouse_genomes_project 18 34874303 34874394 + Gm24401 snoRNA snoRNA MGP_AJ_T0049402.1 MGP_AJ_G0024282.1 mouse_genomes_project 18 34520753 34523094 + MGP_AJ_P0049402 Pcdhb6 protein_coding protein_coding MGP_AJ_T0049403.1 MGP_AJ_G0024282.1 mouse_genomes_project 18 34520778 34524502 + MGP_AJ_P0049403 Pcdhb6 protein_coding protein_coding MGP_AJ_T0013307.1 MGP_AJ_G0011402.1 mouse_genomes_project 18 2496084 2496457 - processed_pseudogene processed_pseudogene MGP_AJ_T0049672.1 MGP_AJ_G0024395.1 mouse_genomes_project 18 49749157 49772902 + MGP_AJ_P0049672 Zfp474 protein_coding protein_coding MGP_AJ_T0049239.1 MGP_AJ_G0024220.1 mouse_genomes_project 18 32021240 32051597 - MGP_AJ_P0049239 Etf1 protein_coding protein_coding MGP_AJ_T0049240.1 MGP_AJ_G0024220.1 mouse_genomes_project 18 32051423 32051531 - MGP_AJ_P0049240 Etf1 protein_coding protein_coding MGP_AJ_T0049796.1 MGP_AJ_G0024444.1 mouse_genomes_project 18 58442223 58461062 - MGP_AJ_P0049796 Slc26a2 protein_coding protein_coding MGP_AJ_T0049797.1 MGP_AJ_G0024444.1 mouse_genomes_project 18 58446638 58449828 - MGP_AJ_P0049797 Slc26a2 protein_coding protein_coding MGP_AJ_T0049798.1 MGP_AJ_G0024444.1 mouse_genomes_project 18 58451163 58460830 - MGP_AJ_P0049798 Slc26a2 protein_coding protein_coding MGP_AJ_T0049799.1 MGP_AJ_G0024444.1 mouse_genomes_project 18 58456636 58460807 - Slc26a2 protein_coding retained_intron MGP_AJ_T0049256.1 MGP_AJ_G0024227.1 mouse_genomes_project 18 32693425 32703853 + MGP_AJ_P0049256 Matr3 protein_coding protein_coding MGP_AJ_T0049257.1 MGP_AJ_G0024227.1 mouse_genomes_project 18 32693437 32732652 + MGP_AJ_P0049257 Matr3 protein_coding protein_coding MGP_AJ_T0049258.1 MGP_AJ_G0024227.1 mouse_genomes_project 18 32693471 32703486 + MGP_AJ_P0049258 Matr3 protein_coding protein_coding MGP_AJ_T0049259.1 MGP_AJ_G0024227.1 mouse_genomes_project 18 32693496 32729495 + MGP_AJ_P0049259 Matr3 protein_coding nonsense_mediated_decay MGP_AJ_T0049260.1 MGP_AJ_G0024227.1 mouse_genomes_project 18 32693578 32728628 + MGP_AJ_P0049260 Matr3 protein_coding protein_coding MGP_AJ_T0049261.1 MGP_AJ_G0024227.1 mouse_genomes_project 18 32693724 32728628 + MGP_AJ_P0049261 Matr3 protein_coding protein_coding MGP_AJ_T0049262.1 MGP_AJ_G0024227.1 mouse_genomes_project 18 32693732 32728628 + MGP_AJ_P0049262 Matr3 protein_coding protein_coding MGP_AJ_T0049263.1 MGP_AJ_G0024227.1 mouse_genomes_project 18 32693766 32717139 + MGP_AJ_P0049263 Matr3 protein_coding protein_coding MGP_AJ_T0049264.1 MGP_AJ_G0024227.1 mouse_genomes_project 18 32693962 32703566 + MGP_AJ_P0049264 Matr3 protein_coding protein_coding MGP_AJ_T0049265.1 MGP_AJ_G0024227.1 mouse_genomes_project 18 32693968 32717424 + MGP_AJ_P0049265 Matr3 protein_coding protein_coding MGP_AJ_T0049266.1 MGP_AJ_G0024227.1 mouse_genomes_project 18 32703289 32711838 + Matr3 protein_coding retained_intron MGP_AJ_T0049267.1 MGP_AJ_G0024227.1 mouse_genomes_project 18 32703518 32730983 + MGP_AJ_P0049267 Matr3 protein_coding protein_coding MGP_AJ_T0049268.1 MGP_AJ_G0024227.1 mouse_genomes_project 18 32715603 32728628 + MGP_AJ_P0049268 Matr3 protein_coding protein_coding MGP_AJ_T0049269.1 MGP_AJ_G0024227.1 mouse_genomes_project 18 32715605 32728628 + MGP_AJ_P0049269 Matr3 protein_coding protein_coding MGP_AJ_T0049270.1 MGP_AJ_G0024227.1 mouse_genomes_project 18 32716031 32717407 + Matr3 protein_coding retained_intron MGP_AJ_T0049271.1 MGP_AJ_G0024227.1 mouse_genomes_project 18 32717157 32718856 + Matr3 protein_coding retained_intron MGP_AJ_T0011461.1 MGP_AJ_G0009583.1 mouse_genomes_project 18 53134716 53135022 - Gm22484 misc_RNA misc_RNA MGP_AJ_T0049442.1 MGP_AJ_G0024313.1 mouse_genomes_project 18 34905052 35011791 + MGP_AJ_P0049442 Pcdhga9 protein_coding protein_coding MGP_AJ_T0049443.1 MGP_AJ_G0024313.1 mouse_genomes_project 18 34905491 34908529 + Pcdhga9 protein_coding retained_intron MGP_AJ_T0049800.1 MGP_AJ_G0024445.1 mouse_genomes_project 18 58470952 58540149 + MGP_AJ_P0049800 Pde6a protein_coding protein_coding MGP_AJ_T0049801.1 MGP_AJ_G0024445.1 mouse_genomes_project 18 58524710 58540149 + MGP_AJ_P0049801 Pde6a protein_coding protein_coding MGP_AJ_T0101754.1 MGP_AJ_G0039683.1 mouse_genomes_project 18 31309640 31323207 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0101755.1 MGP_AJ_G0039683.1 mouse_genomes_project 18 31311652 31311924 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0048950.1 MGP_AJ_G0024107.1 mouse_genomes_project 18 6876573 6912375 - MGP_AJ_P0048950 Usp14 protein_coding protein_coding MGP_AJ_T0048951.1 MGP_AJ_G0024107.1 mouse_genomes_project 18 6876735 6912301 - MGP_AJ_P0048951 Usp14 protein_coding protein_coding MGP_AJ_T0048952.1 MGP_AJ_G0024107.1 mouse_genomes_project 18 6878041 6882827 - Usp14 protein_coding retained_intron MGP_AJ_T0048953.1 MGP_AJ_G0024107.1 mouse_genomes_project 18 6884077 6890704 - Usp14 protein_coding retained_intron MGP_AJ_T0048954.1 MGP_AJ_G0024107.1 mouse_genomes_project 18 6891650 6912315 - Usp14 protein_coding retained_intron MGP_AJ_T0048955.1 MGP_AJ_G0024107.1 mouse_genomes_project 18 6894298 6899208 - Usp14 protein_coding retained_intron MGP_AJ_T0048956.1 MGP_AJ_G0024107.1 mouse_genomes_project 18 6906384 6912256 - Usp14 protein_coding retained_intron MGP_AJ_T0049928.1 MGP_AJ_G0024492.1 mouse_genomes_project 18 64798058 64814295 + MGP_AJ_P0049928 Slmo1 protein_coding protein_coding MGP_AJ_T0049415.1 MGP_AJ_G0024293.1 mouse_genomes_project 18 34660945 34665606 + MGP_AJ_P0049415 Pcdhb17 protein_coding protein_coding MGP_AJ_T0049120.1 MGP_AJ_G0024170.1 mouse_genomes_project 18 21850163 21850472 - MGP_AJ_P0049120 Gm9955 protein_coding protein_coding MGP_AJ_T0049743.1 MGP_AJ_G0024428.1 mouse_genomes_project 18 57705876 57733731 - MGP_AJ_P0049743 Smim3 protein_coding protein_coding MGP_AJ_T0101758.1 MGP_AJ_G0039685.1 mouse_genomes_project 18 34815747 34816222 - transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0101759.1 MGP_AJ_G0039685.1 mouse_genomes_project 18 34816067 34817487 - transcribed_processed_pseudogene processed_transcript MGP_AJ_T0050120.1 MGP_AJ_G0024540.1 mouse_genomes_project 18 74528165 74529417 - MGP_AJ_P0050120 Gm7276 protein_coding protein_coding MGP_AJ_T0049592.1 MGP_AJ_G0024367.1 mouse_genomes_project 18 41576347 41591925 + MGP_AJ_P0049592 Dcp2 protein_coding protein_coding MGP_AJ_T0049593.1 MGP_AJ_G0024367.1 mouse_genomes_project 18 41576372 41621466 + MGP_AJ_P0049593 Dcp2 protein_coding protein_coding MGP_AJ_T0049620.1 MGP_AJ_G0024377.1 mouse_genomes_project 18 43778911 43793273 + MGP_AJ_P0049620 Eif1a protein_coding protein_coding MGP_AJ_T0049621.1 MGP_AJ_G0024377.1 mouse_genomes_project 18 43778915 43792219 + MGP_AJ_P0049621 Eif1a protein_coding protein_coding MGP_AJ_T0010243.1 MGP_AJ_G0008365.1 mouse_genomes_project 18 33117805 33117897 + Gm23882 miRNA miRNA MGP_AJ_T0049351.1 MGP_AJ_G0024251.1 mouse_genomes_project 18 33898361 33900028 - MGP_AJ_P0049351 Cd14 protein_coding protein_coding MGP_AJ_T0049690.1 MGP_AJ_G0024403.1 mouse_genomes_project 18 50827936 50891040 - MGP_AJ_P0049690 Cep120 protein_coding protein_coding MGP_AJ_T0013333.1 MGP_AJ_G0011428.1 mouse_genomes_project 18 34492944 34494209 + processed_pseudogene processed_pseudogene MGP_AJ_T0049383.1 MGP_AJ_G0024268.1 mouse_genomes_project 18 34150378 34357515 + MGP_AJ_P0049383 protein_coding protein_coding MGP_AJ_T0049054.1 MGP_AJ_G0024144.1 mouse_genomes_project 18 17684353 17739027 + MGP_AJ_P0049054 Dsg2 protein_coding protein_coding MGP_AJ_T0049055.1 MGP_AJ_G0024144.1 mouse_genomes_project 18 17684434 17719615 + MGP_AJ_P0049055 Dsg2 protein_coding protein_coding MGP_AJ_T0049056.1 MGP_AJ_G0024144.1 mouse_genomes_project 18 17684525 17716978 + MGP_AJ_P0049056 Dsg2 protein_coding protein_coding MGP_AJ_T0099687.1 MGP_AJ_G0037653.1 mouse_genomes_project 18 20948385 20948487 - Gm23207 snRNA snRNA MGP_AJ_T0007032.1 MGP_AJ_G0005776.1 mouse_genomes_project 18 46682305 46683457 + 1700044K03Rik lincRNA lincRNA MGP_AJ_T0099703.1 MGP_AJ_G0037669.1 mouse_genomes_project 18 60786611 60786674 + Gm23581 snRNA snRNA MGP_AJ_T0050155.1 MGP_AJ_G0024558.1 mouse_genomes_project 18 77559155 77563883 + Gm16286 protein_coding processed_transcript MGP_AJ_T0050157.1 MGP_AJ_G0024558.1 mouse_genomes_project 18 77559188 77565115 + MGP_AJ_P0050157 Gm16286 protein_coding protein_coding MGP_AJ_T0050158.1 MGP_AJ_G0024558.1 mouse_genomes_project 18 77559220 77563157 + Gm16286 protein_coding retained_intron MGP_AJ_T0050159.1 MGP_AJ_G0024558.1 mouse_genomes_project 18 77559236 77560169 + Gm16286 protein_coding retained_intron MGP_AJ_T0050161.1 MGP_AJ_G0024558.1 mouse_genomes_project 18 77559257 77565106 + MGP_AJ_P0050161 Gm16286 protein_coding protein_coding MGP_AJ_T0050163.1 MGP_AJ_G0024558.1 mouse_genomes_project 18 77559285 77565124 + MGP_AJ_P0050163 Gm16286 protein_coding protein_coding MGP_AJ_T0050164.1 MGP_AJ_G0024558.1 mouse_genomes_project 18 77559303 77560077 + Gm16286 protein_coding retained_intron MGP_AJ_T0050165.1 MGP_AJ_G0024558.1 mouse_genomes_project 18 77559308 77560169 + Gm16286 protein_coding retained_intron MGP_AJ_T0050166.1 MGP_AJ_G0024558.1 mouse_genomes_project 18 77559650 77563877 + Gm16286 protein_coding processed_transcript MGP_AJ_T0049551.1 MGP_AJ_G0024345.1 mouse_genomes_project 18 39413852 39474411 - MGP_AJ_P0049551 Lars protein_coding protein_coding MGP_AJ_T0013365.1 MGP_AJ_G0011460.1 mouse_genomes_project 18 86839603 86840062 + processed_pseudogene processed_pseudogene MGP_AJ_T0050046.1 MGP_AJ_G0024518.1 mouse_genomes_project 18 71216202 71235867 + MGP_AJ_P0050046 Mro protein_coding protein_coding MGP_AJ_T0050047.1 MGP_AJ_G0024518.1 mouse_genomes_project 18 71216204 71236237 + MGP_AJ_P0050047 Mro protein_coding protein_coding MGP_AJ_T0050048.1 MGP_AJ_G0024518.1 mouse_genomes_project 18 71216211 71238436 + Mro protein_coding processed_transcript MGP_AJ_T0050049.1 MGP_AJ_G0024518.1 mouse_genomes_project 18 71216219 71235867 + MGP_AJ_P0050049 Mro protein_coding protein_coding MGP_AJ_T0050050.1 MGP_AJ_G0024518.1 mouse_genomes_project 18 71220422 71226993 + Mro protein_coding retained_intron MGP_AJ_T0050051.1 MGP_AJ_G0024518.1 mouse_genomes_project 18 71220463 71228670 + MGP_AJ_P0050051 Mro protein_coding protein_coding MGP_AJ_T0049382.1 MGP_AJ_G0024267.1 mouse_genomes_project 18 34146490 35003194 + MGP_AJ_P0049382 Gm37013 protein_coding protein_coding MGP_AJ_T0010256.1 MGP_AJ_G0008378.1 mouse_genomes_project 18 58049752 58049840 + Mir5107 miRNA miRNA MGP_AJ_T0003816.1 MGP_AJ_G0003425.1 mouse_genomes_project 18 34998962 35000157 - Gm29994 antisense antisense MGP_AJ_T0049067.1 MGP_AJ_G0024152.1 mouse_genomes_project 18 18259070 18428339 - MGP_AJ_P0049067 Garem protein_coding protein_coding MGP_AJ_T0099685.1 MGP_AJ_G0037651.1 mouse_genomes_project 18 17972037 17972183 - Gm24959 snRNA snRNA MGP_AJ_T0013360.1 MGP_AJ_G0011455.1 mouse_genomes_project 18 71664295 71664703 - processed_pseudogene processed_pseudogene MGP_AJ_T0013354.1 MGP_AJ_G0011449.1 mouse_genomes_project 18 52972140 52973118 - processed_pseudogene processed_pseudogene MGP_AJ_T0003809.1 MGP_AJ_G0003418.1 mouse_genomes_project 18 34143611 34144169 - Gm37753 antisense antisense MGP_AJ_T0049308.1 MGP_AJ_G0024240.1 mouse_genomes_project 18 33182427 33218330 - MGP_AJ_P0049308 Nrg2 protein_coding unknown_likely_coding MGP_AJ_T0049309.1 MGP_AJ_G0024240.1 mouse_genomes_project 18 33183380 33367590 - MGP_AJ_P0049309 Nrg2 protein_coding protein_coding MGP_AJ_T0049310.1 MGP_AJ_G0024240.1 mouse_genomes_project 18 33183380 33367590 - MGP_AJ_P0049310 Nrg2 protein_coding protein_coding MGP_AJ_T0049311.1 MGP_AJ_G0024240.1 mouse_genomes_project 18 33193070 33367442 - MGP_AJ_P0049311 Nrg2 protein_coding protein_coding MGP_AJ_T0011456.1 MGP_AJ_G0009578.1 mouse_genomes_project 18 38027517 38027822 - Gm22515 misc_RNA misc_RNA MGP_AJ_T0049860.1 MGP_AJ_G0024468.1 mouse_genomes_project 18 61525408 61548652 + MGP_AJ_P0049860 St8sia3 protein_coding protein_coding MGP_AJ_T0049861.1 MGP_AJ_G0024468.1 mouse_genomes_project 18 61537397 61541376 + MGP_AJ_P0049861 St8sia3 protein_coding protein_coding MGP_AJ_T0049862.1 MGP_AJ_G0024468.1 mouse_genomes_project 18 61537578 61541233 + St8sia3 protein_coding processed_transcript MGP_AJ_T0049863.1 MGP_AJ_G0024468.1 mouse_genomes_project 18 61538209 61541305 + St8sia3 protein_coding retained_intron MGP_AJ_T0049025.1 MGP_AJ_G0024126.1 mouse_genomes_project 18 9982049 10003435 + MGP_AJ_P0049025 Impact protein_coding protein_coding MGP_AJ_T0100944.1 MGP_AJ_G0038910.1 mouse_genomes_project 18 7648020 7648142 + Gm25116 snoRNA snoRNA MGP_AJ_T0049290.1 MGP_AJ_G0024234.1 mouse_genomes_project 18 32857543 32883814 + 1700066B19Rik protein_coding processed_transcript MGP_AJ_T0049297.1 MGP_AJ_G0024234.1 mouse_genomes_project 18 32880853 32884913 + MGP_AJ_P0049297 1700066B19Rik protein_coding protein_coding MGP_AJ_T0049496.1 MGP_AJ_G0024328.1 mouse_genomes_project 18 35439690 35461534 - MGP_AJ_P0049496 Pcdh12 protein_coding protein_coding MGP_AJ_T0049497.1 MGP_AJ_G0024328.1 mouse_genomes_project 18 35439703 35455425 - Pcdh12 protein_coding retained_intron MGP_AJ_T0049498.1 MGP_AJ_G0024328.1 mouse_genomes_project 18 35458218 35461863 - Pcdh12 protein_coding retained_intron MGP_AJ_T0049907.1 MGP_AJ_G0024480.1 mouse_genomes_project 18 63233282 63237734 - MGP_AJ_P0049907 Rax protein_coding protein_coding MGP_AJ_T0049038.1 MGP_AJ_G0024134.1 mouse_genomes_project 18 12433280 12447527 - MGP_AJ_P0049038 Aqp4 protein_coding protein_coding MGP_AJ_T0050147.1 MGP_AJ_G0024551.1 mouse_genomes_project 18 75488399 75554434 - MGP_AJ_P0050147 protein_coding unknown_likely_coding MGP_AJ_T0050148.1 MGP_AJ_G0024551.1 mouse_genomes_project 18 75524326 75547932 - MGP_AJ_P0050148 protein_coding protein_coding MGP_AJ_T0050194.1 MGP_AJ_G0024568.1 mouse_genomes_project 18 79857764 79948547 + MGP_AJ_P0050194 Mbp protein_coding protein_coding MGP_AJ_T0050195.1 MGP_AJ_G0024568.1 mouse_genomes_project 18 79857766 79897359 + MGP_AJ_P0050195 Mbp protein_coding protein_coding MGP_AJ_T0050196.1 MGP_AJ_G0024568.1 mouse_genomes_project 18 79857780 79975533 + MGP_AJ_P0050196 Mbp protein_coding protein_coding MGP_AJ_T0050197.1 MGP_AJ_G0024568.1 mouse_genomes_project 18 79857943 79975532 + MGP_AJ_P0050197 Mbp protein_coding protein_coding MGP_AJ_T0050198.1 MGP_AJ_G0024568.1 mouse_genomes_project 18 79857988 79974113 + MGP_AJ_P0050198 Mbp protein_coding nonsense_mediated_decay MGP_AJ_T0050199.1 MGP_AJ_G0024568.1 mouse_genomes_project 18 79944308 79975533 + MGP_AJ_P0050199 Mbp protein_coding protein_coding MGP_AJ_T0050200.1 MGP_AJ_G0024568.1 mouse_genomes_project 18 79944308 79975533 + MGP_AJ_P0050200 Mbp protein_coding protein_coding MGP_AJ_T0050201.1 MGP_AJ_G0024568.1 mouse_genomes_project 18 79944315 79975523 + MGP_AJ_P0050201 Mbp protein_coding protein_coding MGP_AJ_T0050202.1 MGP_AJ_G0024568.1 mouse_genomes_project 18 79944353 79975533 + MGP_AJ_P0050202 Mbp protein_coding protein_coding MGP_AJ_T0050203.1 MGP_AJ_G0024568.1 mouse_genomes_project 18 79944375 79974052 + MGP_AJ_P0050203 Mbp protein_coding protein_coding MGP_AJ_T0050204.1 MGP_AJ_G0024568.1 mouse_genomes_project 18 79944391 79975533 + MGP_AJ_P0050204 Mbp protein_coding protein_coding MGP_AJ_T0050205.1 MGP_AJ_G0024568.1 mouse_genomes_project 18 79944428 79975522 + MGP_AJ_P0050205 Mbp protein_coding protein_coding MGP_AJ_T0050206.1 MGP_AJ_G0024568.1 mouse_genomes_project 18 79953157 79974183 + Mbp protein_coding processed_transcript MGP_AJ_T0049167.1 MGP_AJ_G0024194.1 mouse_genomes_project 18 29659373 29690961 - MGP_AJ_P0049167 Gypc protein_coding protein_coding MGP_AJ_T0049168.1 MGP_AJ_G0024194.1 mouse_genomes_project 18 29659376 29690907 - MGP_AJ_P0049168 Gypc protein_coding protein_coding MGP_AJ_T0049169.1 MGP_AJ_G0024194.1 mouse_genomes_project 18 29660843 29666463 - MGP_AJ_P0049169 Gypc protein_coding protein_coding MGP_AJ_T0048920.1 MGP_AJ_G0024093.1 mouse_genomes_project 18 3495293 3531091 + MGP_AJ_P0048920 4921524L21Rik protein_coding protein_coding MGP_AJ_T0013318.1 MGP_AJ_G0011413.1 mouse_genomes_project 18 9503811 9504586 - processed_pseudogene processed_pseudogene MGP_AJ_T0099709.1 MGP_AJ_G0037675.1 mouse_genomes_project 18 75866139 75866246 + Gm26430 snRNA snRNA MGP_AJ_T0049793.1 MGP_AJ_G0024442.1 mouse_genomes_project 18 58353044 58378619 + MGP_AJ_P0049793 Csf1r protein_coding protein_coding MGP_AJ_T0049794.1 MGP_AJ_G0024442.1 mouse_genomes_project 18 58353315 58379634 + MGP_AJ_P0049794 Csf1r protein_coding protein_coding MGP_AJ_T0049231.1 MGP_AJ_G0024215.1 mouse_genomes_project 18 31850845 31852322 + MGP_AJ_P0049231 Gm3550 protein_coding protein_coding MGP_AJ_T0013320.1 MGP_AJ_G0011415.1 mouse_genomes_project 18 9906301 9906941 + processed_pseudogene processed_pseudogene MGP_AJ_T0100975.1 MGP_AJ_G0038941.1 mouse_genomes_project 18 85273175 85273309 - Gm24987 snoRNA snoRNA MGP_AJ_T0099680.1 MGP_AJ_G0037646.1 mouse_genomes_project 18 4759475 4759582 + Gm24292 snRNA snRNA MGP_AJ_T0003834.1 MGP_AJ_G0003436.1 mouse_genomes_project 18 67327466 67353647 - 1700061H18Rik antisense antisense MGP_AJ_T0003835.1 MGP_AJ_G0003436.1 mouse_genomes_project 18 67331085 67353634 - 1700061H18Rik antisense antisense MGP_AJ_T0049728.1 MGP_AJ_G0024419.1 mouse_genomes_project 18 55750423 55809221 + MGP_AJ_P0049728 Slc27a6 protein_coding protein_coding MGP_AJ_T0049541.1 MGP_AJ_G0024338.1 mouse_genomes_project 18 37478069 37478793 + MGP_AJ_P0049541 2900055J20Rik protein_coding protein_coding MGP_AJ_T0010259.1 MGP_AJ_G0008381.1 mouse_genomes_project 18 58364944 58365008 + Mir6983 miRNA miRNA MGP_AJ_T0049585.1 MGP_AJ_G0024362.1 mouse_genomes_project 18 41383401 41390950 - MGP_AJ_P0049585 Spinkl protein_coding protein_coding MGP_AJ_T0003821.1 MGP_AJ_G0003430.1 mouse_genomes_project 18 41866982 41881462 + A930012L18Rik antisense antisense MGP_AJ_T0003822.1 MGP_AJ_G0003430.1 mouse_genomes_project 18 41867420 41877763 + A930012L18Rik antisense antisense MGP_AJ_T0049416.1 MGP_AJ_G0024294.1 mouse_genomes_project 18 34665616 34670657 + MGP_AJ_P0049416 Pcdhb18 protein_coding protein_coding MGP_AJ_T0049730.1 MGP_AJ_G0024421.1 mouse_genomes_project 18 56031677 56245036 + MGP_AJ_P0049730 Adamts19 protein_coding protein_coding MGP_AJ_T0007003.1 MGP_AJ_G0005755.1 mouse_genomes_project 18 1692314 1730907 + lincRNA lincRNA MGP_AJ_T0100961.1 MGP_AJ_G0038927.1 mouse_genomes_project 18 44164021 44164166 - Gm22791 snoRNA snoRNA MGP_AJ_T0049154.1 MGP_AJ_G0024185.1 mouse_genomes_project 18 29036191 29039003 - MGP_AJ_P0049154 Sft2d3 protein_coding protein_coding MGP_AJ_T0050052.1 MGP_AJ_G0024519.1 mouse_genomes_project 18 71283461 71336078 - MGP_AJ_P0050052 Mapk4 protein_coding protein_coding MGP_AJ_T0050053.1 MGP_AJ_G0024519.1 mouse_genomes_project 18 71283465 71419871 - MGP_AJ_P0050053 Mapk4 protein_coding nonsense_mediated_decay MGP_AJ_T0050054.1 MGP_AJ_G0024519.1 mouse_genomes_project 18 71326341 71420838 - Mapk4 protein_coding processed_transcript MGP_AJ_T0007026.1 MGP_AJ_G0005772.1 mouse_genomes_project 18 34789563 34790413 + 4930517L18Rik lincRNA lincRNA MGP_AJ_T0049665.1 MGP_AJ_G0024389.1 mouse_genomes_project 18 47715099 47716143 - MGP_AJ_P0049665 Hdhd1a protein_coding protein_coding MGP_AJ_T0100943.1 MGP_AJ_G0038909.1 mouse_genomes_project 18 7443968 7444086 - Gm24894 snoRNA snoRNA MGP_AJ_T0049937.1 MGP_AJ_G0024497.1 mouse_genomes_project 18 65119015 65140066 + MGP_AJ_P0049937 Seh1l protein_coding protein_coding MGP_AJ_T0049283.1 MGP_AJ_G0024230.1 mouse_genomes_project 18 32800570 32802672 - MGP_AJ_P0049283 Mzb1 protein_coding protein_coding MGP_AJ_T0010248.1 MGP_AJ_G0008370.1 mouse_genomes_project 18 38583016 38583107 - Gm44476 miRNA miRNA MGP_AJ_T0049581.1 MGP_AJ_G0024359.1 mouse_genomes_project 18 41292196 41304364 + MGP_AJ_P0049581 Spink6 protein_coding protein_coding MGP_AJ_T0010247.1 MGP_AJ_G0008369.1 mouse_genomes_project 18 35160596 35160655 - Mir6980 miRNA miRNA MGP_AJ_T0049893.1 MGP_AJ_G0024477.1 mouse_genomes_project 18 62991550 63042361 + MGP_AJ_P0049893 Oacyl protein_coding protein_coding MGP_AJ_T0049894.1 MGP_AJ_G0024477.1 mouse_genomes_project 18 62991552 63042425 + MGP_AJ_P0049894 Oacyl protein_coding protein_coding MGP_AJ_T0049895.1 MGP_AJ_G0024477.1 mouse_genomes_project 18 62991576 63041011 + MGP_AJ_P0049895 Oacyl protein_coding unknown_likely_coding MGP_AJ_T0049896.1 MGP_AJ_G0024477.1 mouse_genomes_project 18 63039863 63041211 + Oacyl protein_coding processed_transcript MGP_AJ_T0013344.1 MGP_AJ_G0011439.1 mouse_genomes_project 18 44592403 44593300 - processed_pseudogene processed_pseudogene MGP_AJ_T0099716.1 MGP_AJ_G0037682.1 mouse_genomes_project 18 87510388 87510452 + Gm23859 snRNA snRNA MGP_AJ_T0049149.1 MGP_AJ_G0024181.1 mouse_genomes_project 18 28884804 28908810 + MGP_AJ_P0049149 Ammecr1l protein_coding protein_coding MGP_AJ_T0050080.1 MGP_AJ_G0024531.1 mouse_genomes_project 18 72741648 72770149 + MGP_AJ_P0050080 Smad7 protein_coding protein_coding MGP_AJ_T0050081.1 MGP_AJ_G0024531.1 mouse_genomes_project 18 72742999 72769693 + MGP_AJ_P0050081 Smad7 protein_coding protein_coding MGP_AJ_T0050082.1 MGP_AJ_G0024531.1 mouse_genomes_project 18 72743106 72768200 + MGP_AJ_P0050082 Smad7 protein_coding protein_coding MGP_AJ_T0050083.1 MGP_AJ_G0024531.1 mouse_genomes_project 18 72744092 72768579 + MGP_AJ_P0050083 Smad7 protein_coding protein_coding MGP_AJ_T0050084.1 MGP_AJ_G0024531.1 mouse_genomes_project 18 72749031 72768215 + Smad7 protein_coding processed_transcript MGP_AJ_T0049802.1 MGP_AJ_G0024446.1 mouse_genomes_project 18 58548369 58651301 - MGP_AJ_P0049802 Ppargc1b protein_coding protein_coding MGP_AJ_T0049803.1 MGP_AJ_G0024446.1 mouse_genomes_project 18 58548742 58651270 - MGP_AJ_P0049803 Ppargc1b protein_coding protein_coding MGP_AJ_T0049804.1 MGP_AJ_G0024446.1 mouse_genomes_project 18 58640708 58651270 - Ppargc1b protein_coding processed_transcript MGP_AJ_T0049289.1 MGP_AJ_G0024233.1 mouse_genomes_project 18 32825308 32857463 - MGP_AJ_P0049289 Dnajc18 protein_coding protein_coding MGP_AJ_T0013323.1 MGP_AJ_G0011418.1 mouse_genomes_project 18 18204204 18204853 - processed_pseudogene processed_pseudogene MGP_AJ_T0049926.1 MGP_AJ_G0024490.1 mouse_genomes_project 18 64721375 64733819 + MGP_AJ_P0049926 Tubb6 protein_coding protein_coding MGP_AJ_T0100970.1 MGP_AJ_G0038936.1 mouse_genomes_project 18 72364976 72365041 + Gm23301 snoRNA snoRNA MGP_AJ_T0049204.1 MGP_AJ_G0024208.1 mouse_genomes_project 18 31675373 31692461 - MGP_AJ_P0049204 Nme5 protein_coding nonsense_mediated_decay MGP_AJ_T0049205.1 MGP_AJ_G0024208.1 mouse_genomes_project 18 31675375 31692476 - MGP_AJ_P0049205 Nme5 protein_coding protein_coding MGP_AJ_T0049206.1 MGP_AJ_G0024208.1 mouse_genomes_project 18 31675423 31692448 - MGP_AJ_P0049206 Nme5 protein_coding nonsense_mediated_decay MGP_AJ_T0049207.1 MGP_AJ_G0024208.1 mouse_genomes_project 18 31680681 31692444 - MGP_AJ_P0049207 Nme5 protein_coding nonsense_mediated_decay MGP_AJ_T0048981.1 MGP_AJ_G0024117.1 mouse_genomes_project 18 8984924 9125765 - MGP_AJ_P0048981 Tmem241 protein_coding protein_coding MGP_AJ_T0048982.1 MGP_AJ_G0024117.1 mouse_genomes_project 18 9068516 9125793 - MGP_AJ_P0048982 Tmem241 protein_coding protein_coding MGP_AJ_T0049780.1 MGP_AJ_G0024437.1 mouse_genomes_project 18 58155233 58162077 + MGP_AJ_P0049780 Arsi protein_coding protein_coding MGP_AJ_T0049301.1 MGP_AJ_G0024238.1 mouse_genomes_project 18 32990894 33023597 + MGP_AJ_P0049301 Cxxc5 protein_coding protein_coding MGP_AJ_T0098935.1 MGP_AJ_G0036913.1 mouse_genomes_project 18 2457242 2459473 - Gm26575 sense_intronic sense_intronic MGP_AJ_T0013328.1 MGP_AJ_G0011423.1 mouse_genomes_project 18 27612018 27612393 - processed_pseudogene processed_pseudogene MGP_AJ_T0050077.1 MGP_AJ_G0024528.1 mouse_genomes_project 18 72364147 72366892 + MGP_AJ_P0050077 Rpl17 protein_coding unknown_likely_coding MGP_AJ_T0007046.1 MGP_AJ_G0005786.1 mouse_genomes_project 18 63236182 63239093 + Raxos1 lincRNA lincRNA MGP_AJ_T0050152.1 MGP_AJ_G0024555.1 mouse_genomes_project 18 77437470 77438255 - MGP_AJ_P0050152 protein_coding protein_coding MGP_AJ_T0049145.1 MGP_AJ_G0024178.1 mouse_genomes_project 18 28705387 28735398 - MGP_AJ_P0049145 Slc25a46 protein_coding protein_coding MGP_AJ_T0007034.1 MGP_AJ_G0005778.1 mouse_genomes_project 18 51548081 51578906 + Redrum lincRNA lincRNA MGP_AJ_T0050230.1 MGP_AJ_G0024576.1 mouse_genomes_project 18 82111600 82123244 + MGP_AJ_P0050230 Fam69c protein_coding protein_coding MGP_AJ_T0050231.1 MGP_AJ_G0024576.1 mouse_genomes_project 18 82111823 82133604 + MGP_AJ_P0050231 Fam69c protein_coding protein_coding MGP_AJ_T0050232.1 MGP_AJ_G0024576.1 mouse_genomes_project 18 82111858 82132572 + Fam69c protein_coding processed_transcript MGP_AJ_T0050233.1 MGP_AJ_G0024576.1 mouse_genomes_project 18 82112464 82123021 + Fam69c protein_coding processed_transcript MGP_AJ_T0013346.1 MGP_AJ_G0011441.1 mouse_genomes_project 18 44592412 44593232 - processed_pseudogene processed_pseudogene MGP_AJ_T0049173.1 MGP_AJ_G0024197.1 mouse_genomes_project 18 30072958 30297206 + MGP_AJ_P0049173 Camk4 protein_coding unknown_likely_coding MGP_AJ_T0049174.1 MGP_AJ_G0024197.1 mouse_genomes_project 18 30073371 30308350 + MGP_AJ_P0049174 Camk4 protein_coding protein_coding MGP_AJ_T0049218.1 MGP_AJ_G0024211.1 mouse_genomes_project 18 31739249 31746936 + MGP_AJ_P0049218 Kif20a protein_coding unknown_likely_coding MGP_AJ_T0049219.1 MGP_AJ_G0024211.1 mouse_genomes_project 18 31739396 31746936 + MGP_AJ_P0049219 Kif20a protein_coding unknown_likely_coding MGP_AJ_T0010260.1 MGP_AJ_G0008382.1 mouse_genomes_project 18 58648683 58648796 + Gm25301 miRNA miRNA MGP_AJ_T0049397.1 MGP_AJ_G0024278.1 mouse_genomes_project 18 34482340 34485154 + MGP_AJ_P0049397 Pcdhb2 protein_coding protein_coding MGP_AJ_T0049398.1 MGP_AJ_G0024278.1 mouse_genomes_project 18 34482368 34483950 + MGP_AJ_P0049398 Pcdhb2 protein_coding protein_coding MGP_AJ_T0013325.1 MGP_AJ_G0011420.1 mouse_genomes_project 18 21396904 21398385 + processed_pseudogene processed_pseudogene MGP_AJ_T0001005.1 MGP_AJ_G0000936.1 mouse_genomes_project 18 52287435 52287647 + TEC TEC MGP_AJ_T0013348.1 MGP_AJ_G0011443.1 mouse_genomes_project 18 47384401 47385146 - processed_pseudogene processed_pseudogene MGP_AJ_T0049706.1 MGP_AJ_G0024409.1 mouse_genomes_project 18 53749616 53756036 + MGP_AJ_P0049706 Tex43 protein_coding protein_coding MGP_AJ_T0049707.1 MGP_AJ_G0024409.1 mouse_genomes_project 18 53749645 53753975 + MGP_AJ_P0049707 Tex43 protein_coding protein_coding MGP_AJ_T0049708.1 MGP_AJ_G0024409.1 mouse_genomes_project 18 53749655 53755966 + MGP_AJ_P0049708 Tex43 protein_coding nonsense_mediated_decay MGP_AJ_T0049709.1 MGP_AJ_G0024409.1 mouse_genomes_project 18 53749692 53756036 + MGP_AJ_P0049709 Tex43 protein_coding protein_coding MGP_AJ_T0049064.1 MGP_AJ_G0024150.1 mouse_genomes_project 18 18127744 18154540 + MGP_AJ_P0049064 Rnf138 protein_coding protein_coding MGP_AJ_T0049065.1 MGP_AJ_G0024150.1 mouse_genomes_project 18 18127744 18154540 + MGP_AJ_P0049065 Rnf138 protein_coding protein_coding MGP_AJ_T0098426.1 MGP_AJ_G0036410.1 mouse_genomes_project 18 75088310 75089542 + pseudogene pseudogene MGP_AJ_T0050011.1 MGP_AJ_G0024506.1 mouse_genomes_project 18 67309559 67328191 + Ccdc68 protein_coding processed_transcript MGP_AJ_T0050012.1 MGP_AJ_G0024506.1 mouse_genomes_project 18 67309599 67353522 + MGP_AJ_P0050012 Ccdc68 protein_coding protein_coding MGP_AJ_T0050013.1 MGP_AJ_G0024506.1 mouse_genomes_project 18 67309703 67323099 + Ccdc68 protein_coding processed_transcript MGP_AJ_T0050014.1 MGP_AJ_G0024506.1 mouse_genomes_project 18 67309709 67353522 + MGP_AJ_P0050014 Ccdc68 protein_coding protein_coding MGP_AJ_T0049393.1 MGP_AJ_G0024274.1 mouse_genomes_project 18 34197834 34357515 + MGP_AJ_P0049393 Pcdha12 protein_coding protein_coding MGP_AJ_T0098632.1 MGP_AJ_G0036616.1 mouse_genomes_project 18 35541175 35541272 + Gm24690 rRNA rRNA MGP_AJ_T0013341.1 MGP_AJ_G0011436.1 mouse_genomes_project 18 42259245 42260234 - processed_pseudogene processed_pseudogene MGP_AJ_T0013327.1 MGP_AJ_G0011422.1 mouse_genomes_project 18 22968219 22969062 - processed_pseudogene processed_pseudogene MGP_AJ_T0050135.1 MGP_AJ_G0024545.1 mouse_genomes_project 18 75137636 75151280 - MGP_AJ_P0050135 Haus1 protein_coding protein_coding MGP_AJ_T0017627.1 MGP_AJ_G0015340.1 mouse_genomes_project 18 54546947 54735931 - 4930511M06Rik processed_transcript processed_transcript MGP_AJ_T0017630.1 MGP_AJ_G0015340.1 mouse_genomes_project 18 54689325 54735156 - 4930511M06Rik processed_transcript processed_transcript MGP_AJ_T0017634.1 MGP_AJ_G0015340.1 mouse_genomes_project 18 54728804 54735259 - 4930511M06Rik processed_transcript processed_transcript MGP_AJ_T0017635.1 MGP_AJ_G0015340.1 mouse_genomes_project 18 54729458 54736125 - 4930511M06Rik processed_transcript processed_transcript MGP_AJ_T0017636.1 MGP_AJ_G0015340.1 mouse_genomes_project 18 54731141 54736127 - 4930511M06Rik processed_transcript processed_transcript MGP_AJ_T0010231.1 MGP_AJ_G0008353.1 mouse_genomes_project 18 5607791 5607895 - Gm26119 miRNA miRNA MGP_AJ_T0049322.1 MGP_AJ_G0024246.1 mouse_genomes_project 18 33729753 33753846 + MGP_AJ_P0049322 Ankhd1 protein_coding protein_coding MGP_AJ_T0049323.1 MGP_AJ_G0024246.1 mouse_genomes_project 18 33730377 33829560 + MGP_AJ_P0049323 Ankhd1 protein_coding protein_coding MGP_AJ_T0049324.1 MGP_AJ_G0024246.1 mouse_genomes_project 18 33730377 33829560 + MGP_AJ_P0049324 Ankhd1 protein_coding nonsense_mediated_decay MGP_AJ_T0049325.1 MGP_AJ_G0024246.1 mouse_genomes_project 18 33730445 33836567 + MGP_AJ_P0049325 Ankhd1 protein_coding nonsense_mediated_decay MGP_AJ_T0049326.1 MGP_AJ_G0024246.1 mouse_genomes_project 18 33751260 33754172 + Ankhd1 protein_coding retained_intron MGP_AJ_T0049327.1 MGP_AJ_G0024246.1 mouse_genomes_project 18 33770598 33795188 + MGP_AJ_P0049327 Ankhd1 protein_coding protein_coding MGP_AJ_T0049328.1 MGP_AJ_G0024246.1 mouse_genomes_project 18 33775999 33804532 + Ankhd1 protein_coding processed_transcript MGP_AJ_T0049329.1 MGP_AJ_G0024246.1 mouse_genomes_project 18 33784316 33804520 + MGP_AJ_P0049329 Ankhd1 protein_coding protein_coding MGP_AJ_T0049330.1 MGP_AJ_G0024246.1 mouse_genomes_project 18 33784719 33794778 + Ankhd1 protein_coding retained_intron MGP_AJ_T0049331.1 MGP_AJ_G0024246.1 mouse_genomes_project 18 33808451 33813089 + MGP_AJ_P0049331 Ankhd1 protein_coding nonsense_mediated_decay MGP_AJ_T0049332.1 MGP_AJ_G0024246.1 mouse_genomes_project 18 33808678 33813095 + MGP_AJ_P0049332 Ankhd1 protein_coding nonsense_mediated_decay MGP_AJ_T0049333.1 MGP_AJ_G0024246.1 mouse_genomes_project 18 33811474 33814370 + Ankhd1 protein_coding retained_intron MGP_AJ_T0049334.1 MGP_AJ_G0024246.1 mouse_genomes_project 18 33814397 33829565 + MGP_AJ_P0049334 Ankhd1 protein_coding protein_coding MGP_AJ_T0049335.1 MGP_AJ_G0024246.1 mouse_genomes_project 18 33817885 33836567 + MGP_AJ_P0049335 Ankhd1 protein_coding protein_coding MGP_AJ_T0049336.1 MGP_AJ_G0024246.1 mouse_genomes_project 18 33825568 33829461 + MGP_AJ_P0049336 Ankhd1 protein_coding protein_coding MGP_AJ_T0049384.1 MGP_AJ_G0024269.1 mouse_genomes_project 18 34158418 35003194 + MGP_AJ_P0049384 Gm37388 protein_coding protein_coding MGP_AJ_T0049499.1 MGP_AJ_G0024329.1 mouse_genomes_project 18 35474268 35494958 + MGP_AJ_P0049499 Rnf14 protein_coding protein_coding MGP_AJ_T0050180.1 MGP_AJ_G0024562.1 mouse_genomes_project 18 77650812 77724478 - MGP_AJ_P0050180 Kcng2 protein_coding protein_coding MGP_AJ_T0050181.1 MGP_AJ_G0024562.1 mouse_genomes_project 18 77680625 77723560 - MGP_AJ_P0050181 Kcng2 protein_coding protein_coding MGP_AJ_T0050182.1 MGP_AJ_G0024562.1 mouse_genomes_project 18 77680890 77723874 - MGP_AJ_P0050182 Kcng2 protein_coding protein_coding MGP_AJ_T0013313.1 MGP_AJ_G0011408.1 mouse_genomes_project 18 6797938 6798754 + processed_pseudogene processed_pseudogene MGP_AJ_T0049041.1 MGP_AJ_G0024136.1 mouse_genomes_project 18 12870358 12871101 + MGP_AJ_P0049041 Gm10036 protein_coding protein_coding MGP_AJ_T0010274.1 MGP_AJ_G0008396.1 mouse_genomes_project 18 80108209 80108269 + Mir5112 miRNA miRNA MGP_AJ_T0049693.1 MGP_AJ_G0024406.1 mouse_genomes_project 18 53583107 53660189 + MGP_AJ_P0049693 Gramd3 protein_coding protein_coding MGP_AJ_T0049046.1 MGP_AJ_G0024139.1 mouse_genomes_project 18 17048482 17077798 - MGP_AJ_P0049046 Dsc2 protein_coding protein_coding MGP_AJ_T0049047.1 MGP_AJ_G0024139.1 mouse_genomes_project 18 17048482 17077874 - MGP_AJ_P0049047 Dsc2 protein_coding protein_coding MGP_AJ_T0049048.1 MGP_AJ_G0024139.1 mouse_genomes_project 18 17049192 17056473 - MGP_AJ_P0049048 Dsc2 protein_coding protein_coding MGP_AJ_T0049049.1 MGP_AJ_G0024139.1 mouse_genomes_project 18 17049328 17077829 - MGP_AJ_P0049049 Dsc2 protein_coding nonsense_mediated_decay MGP_AJ_T0049589.1 MGP_AJ_G0024365.1 mouse_genomes_project 18 41473896 41481462 + MGP_AJ_P0049589 Npy6r protein_coding protein_coding MGP_AJ_T0017623.1 MGP_AJ_G0015339.1 mouse_genomes_project 18 47205679 47216567 - C030005K06Rik processed_transcript processed_transcript MGP_AJ_T0017624.1 MGP_AJ_G0015339.1 mouse_genomes_project 18 47209114 47216751 - C030005K06Rik processed_transcript processed_transcript MGP_AJ_T0017625.1 MGP_AJ_G0015339.1 mouse_genomes_project 18 47215184 47216751 - C030005K06Rik processed_transcript processed_transcript MGP_AJ_T0017626.1 MGP_AJ_G0015339.1 mouse_genomes_project 18 47215204 47216512 - C030005K06Rik processed_transcript processed_transcript MGP_AJ_T0099702.1 MGP_AJ_G0037668.1 mouse_genomes_project 18 58718129 58718230 - Gm25834 snRNA snRNA MGP_AJ_T0013343.1 MGP_AJ_G0011438.1 mouse_genomes_project 18 43632440 43633016 - processed_pseudogene processed_pseudogene MGP_AJ_T0049740.1 MGP_AJ_G0024425.1 mouse_genomes_project 18 57413199 57450563 + MGP_AJ_P0049740 Gm4951 protein_coding protein_coding MGP_AJ_T0013340.1 MGP_AJ_G0011435.1 mouse_genomes_project 18 37953165 37953606 + processed_pseudogene processed_pseudogene MGP_AJ_T0050121.1 MGP_AJ_G0024541.1 mouse_genomes_project 18 74529012 74608928 + MGP_AJ_P0050121 St8sia5 protein_coding protein_coding MGP_AJ_T0050122.1 MGP_AJ_G0024541.1 mouse_genomes_project 18 74529138 74608798 + MGP_AJ_P0050122 St8sia5 protein_coding protein_coding MGP_AJ_T0010249.1 MGP_AJ_G0008371.1 mouse_genomes_project 18 39518828 39518891 + Gm22697 miRNA miRNA MGP_AJ_T0049418.1 MGP_AJ_G0024296.1 mouse_genomes_project 18 34680421 34684310 + MGP_AJ_P0049418 Pcdhb20 protein_coding protein_coding MGP_AJ_T0049628.1 MGP_AJ_G0024383.1 mouse_genomes_project 18 44418248 44464992 - MGP_AJ_P0049628 Sema6a protein_coding protein_coding MGP_AJ_T0049629.1 MGP_AJ_G0024383.1 mouse_genomes_project 18 44429071 44555118 - MGP_AJ_P0049629 Sema6a protein_coding protein_coding MGP_AJ_T0049630.1 MGP_AJ_G0024383.1 mouse_genomes_project 18 44429072 44555156 - MGP_AJ_P0049630 Sema6a protein_coding protein_coding MGP_AJ_T0049631.1 MGP_AJ_G0024383.1 mouse_genomes_project 18 44431255 44554734 - MGP_AJ_P0049631 Sema6a protein_coding protein_coding MGP_AJ_T0049632.1 MGP_AJ_G0024383.1 mouse_genomes_project 18 44431257 44554736 - MGP_AJ_P0049632 Sema6a protein_coding protein_coding MGP_AJ_T0049633.1 MGP_AJ_G0024383.1 mouse_genomes_project 18 44432195 44519721 - MGP_AJ_P0049633 Sema6a protein_coding protein_coding MGP_AJ_T0049634.1 MGP_AJ_G0024383.1 mouse_genomes_project 18 44459438 44555156 - Sema6a protein_coding retained_intron MGP_AJ_T0049635.1 MGP_AJ_G0024383.1 mouse_genomes_project 18 44459453 44555158 - Sema6a protein_coding retained_intron MGP_AJ_T0049636.1 MGP_AJ_G0024383.1 mouse_genomes_project 18 44478291 44519699 - MGP_AJ_P0049636 Sema6a protein_coding protein_coding MGP_AJ_T0049637.1 MGP_AJ_G0024383.1 mouse_genomes_project 18 44490074 44554556 - Sema6a protein_coding retained_intron MGP_AJ_T0013319.1 MGP_AJ_G0011414.1 mouse_genomes_project 18 9748067 9748856 - processed_pseudogene processed_pseudogene MGP_AJ_T0049613.1 MGP_AJ_G0024373.1 mouse_genomes_project 18 43447295 43477210 - MGP_AJ_P0049613 Ccdc112 protein_coding protein_coding MGP_AJ_T0049904.1 MGP_AJ_G0024479.1 mouse_genomes_project 18 63164650 63178824 + MGP_AJ_P0049904 Grp protein_coding protein_coding MGP_AJ_T0049905.1 MGP_AJ_G0024479.1 mouse_genomes_project 18 63165315 63172098 + MGP_AJ_P0049905 Grp protein_coding protein_coding MGP_AJ_T0049906.1 MGP_AJ_G0024479.1 mouse_genomes_project 18 63165325 63178823 + MGP_AJ_P0049906 Grp protein_coding protein_coding MGP_AJ_T0011460.1 MGP_AJ_G0009582.1 mouse_genomes_project 18 52748048 52748333 - Gm24514 misc_RNA misc_RNA MGP_AJ_T0050151.1 MGP_AJ_G0024554.1 mouse_genomes_project 18 77394284 77469685 + MGP_AJ_P0050151 Pard6g protein_coding protein_coding MGP_AJ_T0050143.1 MGP_AJ_G0024549.1 mouse_genomes_project 18 75385686 75399463 - MGP_AJ_P0050143 Siglec15 protein_coding protein_coding MGP_AJ_T0049410.1 MGP_AJ_G0024288.1 mouse_genomes_project 18 34608653 34611904 + MGP_AJ_P0049410 Pcdhb12 protein_coding protein_coding MGP_AJ_T0049036.1 MGP_AJ_G0024133.1 mouse_genomes_project 18 12012269 12108040 - MGP_AJ_P0049036 Kctd1 protein_coding protein_coding MGP_AJ_T0049037.1 MGP_AJ_G0024133.1 mouse_genomes_project 18 12012269 12197310 - MGP_AJ_P0049037 Kctd1 protein_coding protein_coding MGP_AJ_T0013334.1 MGP_AJ_G0011429.1 mouse_genomes_project 18 34607275 34608146 + processed_pseudogene processed_pseudogene MGP_AJ_T0049379.1 MGP_AJ_G0024266.1 mouse_genomes_project 18 34143651 34357515 + MGP_AJ_P0049379 Pcdha6 protein_coding protein_coding MGP_AJ_T0049380.1 MGP_AJ_G0024266.1 mouse_genomes_project 18 34143668 34357246 + MGP_AJ_P0049380 Pcdha6 protein_coding protein_coding MGP_AJ_T0049381.1 MGP_AJ_G0024266.1 mouse_genomes_project 18 34143670 34357011 + MGP_AJ_P0049381 Pcdha6 protein_coding nonsense_mediated_decay MGP_AJ_T0010271.1 MGP_AJ_G0008393.1 mouse_genomes_project 18 73549233 73549334 + Mir6358 miRNA miRNA MGP_AJ_T0017609.1 MGP_AJ_G0015334.1 mouse_genomes_project 18 34329701 34348361 - Gm10544 processed_transcript antisense MGP_AJ_T0017610.1 MGP_AJ_G0015334.1 mouse_genomes_project 18 34345439 34348345 - Gm10544 processed_transcript antisense MGP_AJ_T0017611.1 MGP_AJ_G0015334.1 mouse_genomes_project 18 34346600 34348353 - Gm10544 processed_transcript retained_intron MGP_AJ_T0049220.1 MGP_AJ_G0024212.1 mouse_genomes_project 18 31745283 31765768 - MGP_AJ_P0049220 Cdc23 protein_coding protein_coding MGP_AJ_T0049221.1 MGP_AJ_G0024212.1 mouse_genomes_project 18 31746020 31765768 - MGP_AJ_P0049221 Cdc23 protein_coding protein_coding MGP_AJ_T0049222.1 MGP_AJ_G0024212.1 mouse_genomes_project 18 31748008 31748961 - Cdc23 protein_coding retained_intron MGP_AJ_T0049223.1 MGP_AJ_G0024212.1 mouse_genomes_project 18 31750149 31765751 - Cdc23 protein_coding retained_intron MGP_AJ_T0049224.1 MGP_AJ_G0024212.1 mouse_genomes_project 18 31750152 31751185 - Cdc23 protein_coding retained_intron MGP_AJ_T0049225.1 MGP_AJ_G0024212.1 mouse_genomes_project 18 31751151 31751977 - Cdc23 protein_coding retained_intron MGP_AJ_T0049226.1 MGP_AJ_G0024212.1 mouse_genomes_project 18 31755256 31759351 - Cdc23 protein_coding retained_intron MGP_AJ_T0049227.1 MGP_AJ_G0024212.1 mouse_genomes_project 18 31760885 31765751 - Cdc23 protein_coding retained_intron MGP_AJ_T0049228.1 MGP_AJ_G0024212.1 mouse_genomes_project 18 31761737 31765755 - Cdc23 protein_coding retained_intron MGP_AJ_T0003806.1 MGP_AJ_G0003415.1 mouse_genomes_project 18 32991463 32992152 - Gm29417 antisense antisense MGP_AJ_T0049165.1 MGP_AJ_G0024193.1 mouse_genomes_project 18 29501597 29559992 + MGP_AJ_P0049165 Bin1 protein_coding protein_coding MGP_AJ_T0049166.1 MGP_AJ_G0024193.1 mouse_genomes_project 18 29501597 29559992 + MGP_AJ_P0049166 Bin1 protein_coding protein_coding MGP_AJ_T0048970.1 MGP_AJ_G0024112.1 mouse_genomes_project 18 7538568 7553339 - MGP_AJ_P0048970 Abhd3 protein_coding protein_coding MGP_AJ_T0048971.1 MGP_AJ_G0024112.1 mouse_genomes_project 18 7539212 7596644 - MGP_AJ_P0048971 Abhd3 protein_coding protein_coding MGP_AJ_T0049919.1 MGP_AJ_G0024484.1 mouse_genomes_project 18 63767381 63774328 + MGP_AJ_P0049919 Pmaip1 protein_coding protein_coding MGP_AJ_T0049132.1 MGP_AJ_G0024174.1 mouse_genomes_project 18 22621805 22905057 - MGP_AJ_P0049132 Celf4 protein_coding unknown_likely_coding MGP_AJ_T0049133.1 MGP_AJ_G0024174.1 mouse_genomes_project 18 22621805 22681976 - MGP_AJ_P0049133 Celf4 protein_coding unknown_likely_coding MGP_AJ_T0049134.1 MGP_AJ_G0024174.1 mouse_genomes_project 18 22621818 22905503 - MGP_AJ_P0049134 Celf4 protein_coding protein_coding MGP_AJ_T0049135.1 MGP_AJ_G0024174.1 mouse_genomes_project 18 22621818 22905503 - MGP_AJ_P0049135 Celf4 protein_coding protein_coding MGP_AJ_T0049840.1 MGP_AJ_G0024464.1 mouse_genomes_project 18 60255573 60277205 + MGP_AJ_P0049840 Napg protein_coding protein_coding MGP_AJ_T0049841.1 MGP_AJ_G0024464.1 mouse_genomes_project 18 60255598 60258391 + Napg protein_coding retained_intron MGP_AJ_T0049842.1 MGP_AJ_G0024464.1 mouse_genomes_project 18 60255638 60274687 + MGP_AJ_P0049842 Napg protein_coding protein_coding MGP_AJ_T0049843.1 MGP_AJ_G0024464.1 mouse_genomes_project 18 60255659 60260522 + Napg protein_coding retained_intron MGP_AJ_T0049844.1 MGP_AJ_G0024464.1 mouse_genomes_project 18 60257975 60260750 + Napg protein_coding retained_intron MGP_AJ_T0049845.1 MGP_AJ_G0024464.1 mouse_genomes_project 18 60263692 60269569 + Napg protein_coding processed_transcript MGP_AJ_T0049846.1 MGP_AJ_G0024464.1 mouse_genomes_project 18 60263775 60272313 + Napg protein_coding retained_intron MGP_AJ_T0049847.1 MGP_AJ_G0024464.1 mouse_genomes_project 18 60265948 60272769 + Napg protein_coding processed_transcript MGP_AJ_T0049710.1 MGP_AJ_G0024410.1 mouse_genomes_project 18 53874699 53921886 + MGP_AJ_P0049710 Lmnb1 protein_coding protein_coding MGP_AJ_T0049711.1 MGP_AJ_G0024410.1 mouse_genomes_project 18 53894818 53900616 + Lmnb1 protein_coding retained_intron MGP_AJ_T0011448.1 MGP_AJ_G0009570.1 mouse_genomes_project 18 16729735 16730032 + Gm25392 misc_RNA misc_RNA MGP_AJ_T0049435.1 MGP_AJ_G0024309.1 mouse_genomes_project 18 34883003 35011794 + MGP_AJ_P0049435 Pcdhga7 protein_coding protein_coding MGP_AJ_T0049436.1 MGP_AJ_G0024309.1 mouse_genomes_project 18 34883057 34886101 + MGP_AJ_P0049436 Pcdhga7 protein_coding protein_coding MGP_AJ_T0050019.1 MGP_AJ_G0024508.1 mouse_genomes_project 18 67609324 67613480 - MGP_AJ_P0050019 Dynap protein_coding protein_coding MGP_AJ_T0049869.1 MGP_AJ_G0024473.1 mouse_genomes_project 18 62177560 62513855 + MGP_AJ_P0049869 Nedd4l protein_coding protein_coding MGP_AJ_T0049870.1 MGP_AJ_G0024473.1 mouse_genomes_project 18 62317977 62513855 + MGP_AJ_P0049870 Nedd4l protein_coding protein_coding MGP_AJ_T0049871.1 MGP_AJ_G0024473.1 mouse_genomes_project 18 62433235 62513850 + MGP_AJ_P0049871 Nedd4l protein_coding unknown_likely_coding MGP_AJ_T0049087.1 MGP_AJ_G0024158.1 mouse_genomes_project 18 20889531 20912313 + Mapre2 protein_coding retained_intron MGP_AJ_T0049088.1 MGP_AJ_G0024158.1 mouse_genomes_project 18 20889537 21014234 + MGP_AJ_P0049088 Mapre2 protein_coding protein_coding MGP_AJ_T0049089.1 MGP_AJ_G0024158.1 mouse_genomes_project 18 20889591 20991226 + MGP_AJ_P0049089 Mapre2 protein_coding protein_coding MGP_AJ_T0049090.1 MGP_AJ_G0024158.1 mouse_genomes_project 18 20890923 21023799 + MGP_AJ_P0049090 Mapre2 protein_coding protein_coding MGP_AJ_T0049091.1 MGP_AJ_G0024158.1 mouse_genomes_project 18 20890946 20929154 + Mapre2 protein_coding processed_transcript MGP_AJ_T0049092.1 MGP_AJ_G0024158.1 mouse_genomes_project 18 20935135 20964366 + Mapre2 protein_coding retained_intron MGP_AJ_T0049093.1 MGP_AJ_G0024158.1 mouse_genomes_project 18 20935218 21025297 + MGP_AJ_P0049093 Mapre2 protein_coding protein_coding MGP_AJ_T0049094.1 MGP_AJ_G0024158.1 mouse_genomes_project 18 20935218 21022360 + MGP_AJ_P0049094 Mapre2 protein_coding nonsense_mediated_decay MGP_AJ_T0049940.1 MGP_AJ_G0024500.1 mouse_genomes_project 18 65625100 65665578 - MGP_AJ_P0049940 Fam210a protein_coding protein_coding MGP_AJ_T0049941.1 MGP_AJ_G0024500.1 mouse_genomes_project 18 65640829 65665447 - MGP_AJ_P0049941 Fam210a protein_coding protein_coding MGP_AJ_T0007005.1 MGP_AJ_G0005757.1 mouse_genomes_project 18 7596591 7601562 + 4930563E18Rik lincRNA lincRNA MGP_AJ_T0010242.1 MGP_AJ_G0008364.1 mouse_genomes_project 18 32688301 32688412 + miRNA miRNA MGP_AJ_T0003825.1 MGP_AJ_G0003432.1 mouse_genomes_project 18 53938159 53972102 + Gm15345 antisense antisense MGP_AJ_T0098637.1 MGP_AJ_G0036621.1 mouse_genomes_project 18 70894603 70894751 - n-R5-8s1 rRNA rRNA MGP_AJ_T0099693.1 MGP_AJ_G0037659.1 mouse_genomes_project 18 40286928 40287035 - Gm22264 snRNA snRNA MGP_AJ_T0013368.1 MGP_AJ_G0011463.1 mouse_genomes_project 18 87585544 87585763 - processed_pseudogene processed_pseudogene MGP_AJ_T0049452.1 MGP_AJ_G0024319.1 mouse_genomes_project 18 34984400 35011794 + MGP_AJ_P0049452 Pcdhga8 protein_coding protein_coding MGP_AJ_T0049453.1 MGP_AJ_G0024319.1 mouse_genomes_project 18 34984722 35011794 + MGP_AJ_P0049453 Pcdhga8 protein_coding protein_coding MGP_AJ_T0049454.1 MGP_AJ_G0024319.1 mouse_genomes_project 18 34984777 34987877 + Pcdhga8 protein_coding retained_intron MGP_AJ_T0010238.1 MGP_AJ_G0008360.1 mouse_genomes_project 18 9721300 9721385 + Mir1948 miRNA miRNA MGP_AJ_T0007052.1 MGP_AJ_G0005792.1 mouse_genomes_project 18 78593370 78603169 - 4930594M17Rik lincRNA lincRNA MGP_AJ_T0049112.1 MGP_AJ_G0024165.1 mouse_genomes_project 18 21612575 21619468 + MGP_AJ_P0049112 2700062C07Rik protein_coding protein_coding MGP_AJ_T0049113.1 MGP_AJ_G0024166.1 mouse_genomes_project 18 21626707 21676086 - MGP_AJ_P0049113 Rprd1a protein_coding protein_coding MGP_AJ_T0100949.1 MGP_AJ_G0038915.1 mouse_genomes_project 18 25447698 25447830 + Gm24246 snoRNA snoRNA MGP_AJ_T0049005.1 MGP_AJ_G0024123.1 mouse_genomes_project 18 9648648 9695071 + Ttc39c protein_coding retained_intron MGP_AJ_T0049006.1 MGP_AJ_G0024123.1 mouse_genomes_project 18 9649190 9742383 + MGP_AJ_P0049006 Ttc39c protein_coding protein_coding MGP_AJ_T0049007.1 MGP_AJ_G0024123.1 mouse_genomes_project 18 9740324 9742450 + Ttc39c protein_coding retained_intron MGP_AJ_T0050044.1 MGP_AJ_G0024516.1 mouse_genomes_project 18 71088233 71107705 - MGP_AJ_P0050044 Elac1 protein_coding protein_coding MGP_AJ_T0099684.1 MGP_AJ_G0037650.1 mouse_genomes_project 18 11662980 11663144 - Gm24924 snRNA snRNA MGP_AJ_T0049582.1 MGP_AJ_G0024360.1 mouse_genomes_project 18 41325244 41329360 + MGP_AJ_P0049582 Spink12 protein_coding protein_coding MGP_AJ_T0098629.1 MGP_AJ_G0036613.1 mouse_genomes_project 18 21827391 21827506 - n-R5s23 rRNA rRNA MGP_AJ_T0048815.1 MGP_AJ_G0024080.1 mouse_genomes_project 18 105262 168104 - MGP_AJ_P0048815 Crem protein_coding protein_coding MGP_AJ_T0048816.1 MGP_AJ_G0024080.1 mouse_genomes_project 18 105568 178752 - MGP_AJ_P0048816 Crem protein_coding protein_coding MGP_AJ_T0048817.1 MGP_AJ_G0024080.1 mouse_genomes_project 18 105570 178662 - MGP_AJ_P0048817 Crem protein_coding protein_coding MGP_AJ_T0048818.1 MGP_AJ_G0024080.1 mouse_genomes_project 18 105570 178662 - MGP_AJ_P0048818 Crem protein_coding protein_coding MGP_AJ_T0048819.1 MGP_AJ_G0024080.1 mouse_genomes_project 18 105570 178561 - MGP_AJ_P0048819 Crem protein_coding protein_coding MGP_AJ_T0048820.1 MGP_AJ_G0024080.1 mouse_genomes_project 18 105570 139423 - MGP_AJ_P0048820 Crem protein_coding protein_coding MGP_AJ_T0048821.1 MGP_AJ_G0024080.1 mouse_genomes_project 18 105570 178662 - MGP_AJ_P0048821 Crem protein_coding protein_coding MGP_AJ_T0048822.1 MGP_AJ_G0024080.1 mouse_genomes_project 18 106171 121617 - MGP_AJ_P0048822 Crem protein_coding protein_coding MGP_AJ_T0048823.1 MGP_AJ_G0024080.1 mouse_genomes_project 18 106177 178586 - Crem protein_coding processed_transcript MGP_AJ_T0048824.1 MGP_AJ_G0024080.1 mouse_genomes_project 18 106475 178821 - MGP_AJ_P0048824 Crem protein_coding protein_coding MGP_AJ_T0048825.1 MGP_AJ_G0024080.1 mouse_genomes_project 18 106478 139420 - MGP_AJ_P0048825 Crem protein_coding protein_coding MGP_AJ_T0048826.1 MGP_AJ_G0024080.1 mouse_genomes_project 18 106604 121595 - MGP_AJ_P0048826 Crem protein_coding protein_coding MGP_AJ_T0048827.1 MGP_AJ_G0024080.1 mouse_genomes_project 18 106637 168020 - MGP_AJ_P0048827 Crem protein_coding protein_coding MGP_AJ_T0048828.1 MGP_AJ_G0024080.1 mouse_genomes_project 18 106728 165987 - MGP_AJ_P0048828 Crem protein_coding protein_coding MGP_AJ_T0048829.1 MGP_AJ_G0024080.1 mouse_genomes_project 18 106748 120980 - MGP_AJ_P0048829 Crem protein_coding protein_coding MGP_AJ_T0048830.1 MGP_AJ_G0024080.1 mouse_genomes_project 18 106760 120926 - MGP_AJ_P0048830 Crem protein_coding protein_coding MGP_AJ_T0048831.1 MGP_AJ_G0024080.1 mouse_genomes_project 18 106772 165991 - MGP_AJ_P0048831 Crem protein_coding protein_coding MGP_AJ_T0048832.1 MGP_AJ_G0024080.1 mouse_genomes_project 18 106786 121617 - MGP_AJ_P0048832 Crem protein_coding protein_coding MGP_AJ_T0048833.1 MGP_AJ_G0024080.1 mouse_genomes_project 18 106789 165987 - MGP_AJ_P0048833 Crem protein_coding protein_coding MGP_AJ_T0048834.1 MGP_AJ_G0024080.1 mouse_genomes_project 18 106799 168020 - MGP_AJ_P0048834 Crem protein_coding protein_coding MGP_AJ_T0048835.1 MGP_AJ_G0024080.1 mouse_genomes_project 18 106799 168020 - MGP_AJ_P0048835 Crem protein_coding protein_coding MGP_AJ_T0048836.1 MGP_AJ_G0024080.1 mouse_genomes_project 18 106799 168020 - MGP_AJ_P0048836 Crem protein_coding protein_coding MGP_AJ_T0048837.1 MGP_AJ_G0024080.1 mouse_genomes_project 18 106799 168020 - MGP_AJ_P0048837 Crem protein_coding protein_coding MGP_AJ_T0048838.1 MGP_AJ_G0024080.1 mouse_genomes_project 18 106799 178606 - MGP_AJ_P0048838 Crem protein_coding nonsense_mediated_decay MGP_AJ_T0048839.1 MGP_AJ_G0024080.1 mouse_genomes_project 18 106802 165987 - MGP_AJ_P0048839 Crem protein_coding protein_coding MGP_AJ_T0048840.1 MGP_AJ_G0024080.1 mouse_genomes_project 18 106802 149712 - MGP_AJ_P0048840 Crem protein_coding protein_coding MGP_AJ_T0048841.1 MGP_AJ_G0024080.1 mouse_genomes_project 18 106802 149577 - MGP_AJ_P0048841 Crem protein_coding protein_coding MGP_AJ_T0048842.1 MGP_AJ_G0024080.1 mouse_genomes_project 18 106802 149577 - MGP_AJ_P0048842 Crem protein_coding protein_coding MGP_AJ_T0048843.1 MGP_AJ_G0024080.1 mouse_genomes_project 18 106847 120949 - MGP_AJ_P0048843 Crem protein_coding protein_coding MGP_AJ_T0048844.1 MGP_AJ_G0024080.1 mouse_genomes_project 18 107053 165987 - MGP_AJ_P0048844 Crem protein_coding nonsense_mediated_decay MGP_AJ_T0048845.1 MGP_AJ_G0024080.1 mouse_genomes_project 18 107059 121586 - MGP_AJ_P0048845 Crem protein_coding protein_coding MGP_AJ_T0048846.1 MGP_AJ_G0024080.1 mouse_genomes_project 18 107199 149754 - MGP_AJ_P0048846 Crem protein_coding protein_coding MGP_AJ_T0048847.1 MGP_AJ_G0024080.1 mouse_genomes_project 18 107199 139316 - MGP_AJ_P0048847 Crem protein_coding protein_coding MGP_AJ_T0048848.1 MGP_AJ_G0024080.1 mouse_genomes_project 18 123745 139405 - Crem protein_coding processed_transcript MGP_AJ_T0048849.1 MGP_AJ_G0024080.1 mouse_genomes_project 18 127479 139420 - Crem protein_coding retained_intron MGP_AJ_T0048850.1 MGP_AJ_G0024080.1 mouse_genomes_project 18 127902 139418 - Crem protein_coding processed_transcript MGP_AJ_T0048851.1 MGP_AJ_G0024080.1 mouse_genomes_project 18 134047 178662 - MGP_AJ_P0048851 Crem protein_coding protein_coding MGP_AJ_T0048852.1 MGP_AJ_G0024080.1 mouse_genomes_project 18 134345 178647 - MGP_AJ_P0048852 Crem protein_coding protein_coding MGP_AJ_T0050169.1 MGP_AJ_G0024561.1 mouse_genomes_project 18 77607687 77648904 + MGP_AJ_P0050169 Pqlc1 protein_coding protein_coding MGP_AJ_T0050170.1 MGP_AJ_G0024561.1 mouse_genomes_project 18 77607737 77639651 + MGP_AJ_P0050170 Pqlc1 protein_coding protein_coding MGP_AJ_T0050171.1 MGP_AJ_G0024561.1 mouse_genomes_project 18 77609711 77648992 + MGP_AJ_P0050171 Pqlc1 protein_coding protein_coding MGP_AJ_T0050172.1 MGP_AJ_G0024561.1 mouse_genomes_project 18 77610302 77640337 + MGP_AJ_P0050172 Pqlc1 protein_coding protein_coding MGP_AJ_T0050173.1 MGP_AJ_G0024561.1 mouse_genomes_project 18 77610750 77648983 + MGP_AJ_P0050173 Pqlc1 protein_coding protein_coding MGP_AJ_T0050174.1 MGP_AJ_G0024561.1 mouse_genomes_project 18 77610754 77631365 + Pqlc1 protein_coding retained_intron MGP_AJ_T0050175.1 MGP_AJ_G0024561.1 mouse_genomes_project 18 77610772 77648991 + MGP_AJ_P0050175 Pqlc1 protein_coding protein_coding MGP_AJ_T0050176.1 MGP_AJ_G0024561.1 mouse_genomes_project 18 77610773 77629545 + Pqlc1 protein_coding retained_intron MGP_AJ_T0050177.1 MGP_AJ_G0024561.1 mouse_genomes_project 18 77610773 77648981 + MGP_AJ_P0050177 Pqlc1 protein_coding protein_coding MGP_AJ_T0050178.1 MGP_AJ_G0024561.1 mouse_genomes_project 18 77610784 77648979 + MGP_AJ_P0050178 Pqlc1 protein_coding protein_coding MGP_AJ_T0050179.1 MGP_AJ_G0024561.1 mouse_genomes_project 18 77617286 77617932 + Pqlc1 protein_coding processed_transcript MGP_AJ_T0049404.1 MGP_AJ_G0024283.1 mouse_genomes_project 18 34528505 34532005 + MGP_AJ_P0049404 Pcdhb7 protein_coding protein_coding MGP_AJ_T0050134.1 MGP_AJ_G0024544.1 mouse_genomes_project 18 74981716 75088107 - MGP_AJ_P0050134 8030462N17Rik protein_coding protein_coding MGP_AJ_T0007029.1 MGP_AJ_G0005774.1 mouse_genomes_project 18 35409697 35422963 - 1700086O06Rik lincRNA lincRNA MGP_AJ_T0007030.1 MGP_AJ_G0005774.1 mouse_genomes_project 18 35409697 35423330 - 1700086O06Rik lincRNA lincRNA MGP_AJ_T0099695.1 MGP_AJ_G0037661.1 mouse_genomes_project 18 46740137 46740291 - Gm25440 snRNA snRNA MGP_AJ_T0050021.1 MGP_AJ_G0024510.1 mouse_genomes_project 18 67837851 67848269 + MGP_AJ_P0050021 Stard6 protein_coding protein_coding MGP_AJ_T0050022.1 MGP_AJ_G0024510.1 mouse_genomes_project 18 67838034 67862112 + MGP_AJ_P0050022 Stard6 protein_coding protein_coding MGP_AJ_T0050023.1 MGP_AJ_G0024510.1 mouse_genomes_project 18 67840938 67864176 + MGP_AJ_P0050023 Stard6 protein_coding protein_coding MGP_AJ_T0050128.1 MGP_AJ_G0024543.1 mouse_genomes_project 18 74810157 74912984 - MGP_AJ_P0050128 Rnf165 protein_coding protein_coding MGP_AJ_T0050129.1 MGP_AJ_G0024543.1 mouse_genomes_project 18 74810720 74815406 - Rnf165 protein_coding retained_intron MGP_AJ_T0050130.1 MGP_AJ_G0024543.1 mouse_genomes_project 18 74814994 74912932 - MGP_AJ_P0050130 Rnf165 protein_coding protein_coding MGP_AJ_T0050131.1 MGP_AJ_G0024543.1 mouse_genomes_project 18 74816586 74853324 - Rnf165 protein_coding processed_transcript MGP_AJ_T0050132.1 MGP_AJ_G0024543.1 mouse_genomes_project 18 74909982 74912497 - Rnf165 protein_coding retained_intron MGP_AJ_T0050133.1 MGP_AJ_G0024543.1 mouse_genomes_project 18 74911019 74912987 - MGP_AJ_P0050133 Rnf165 protein_coding protein_coding MGP_AJ_T0007048.1 MGP_AJ_G0005788.1 mouse_genomes_project 18 71373453 71375659 + D730045A05Rik lincRNA lincRNA MGP_AJ_T0050034.1 MGP_AJ_G0024513.1 mouse_genomes_project 18 68632226 69741609 - MGP_AJ_P0050034 Dcc protein_coding protein_coding MGP_AJ_T0050035.1 MGP_AJ_G0024513.1 mouse_genomes_project 18 68632478 69741557 - MGP_AJ_P0050035 Dcc protein_coding protein_coding MGP_AJ_T0050036.1 MGP_AJ_G0024513.1 mouse_genomes_project 18 69332416 69741581 - Dcc protein_coding retained_intron MGP_AJ_T0007002.1 MGP_AJ_G0005754.1 mouse_genomes_project 18 1257711 1264023 - Gm26865 lincRNA lincRNA MGP_AJ_T0102448.1 MGP_AJ_G0040190.1 mouse_genomes_project 18 5052 6812 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0049039.1 MGP_AJ_G0024135.1 mouse_genomes_project 18 12499836 12757627 - MGP_AJ_P0049039 Chst9 protein_coding protein_coding MGP_AJ_T0049040.1 MGP_AJ_G0024135.1 mouse_genomes_project 18 12499836 12796260 - MGP_AJ_P0049040 Chst9 protein_coding nonsense_mediated_decay MGP_AJ_T0050085.1 MGP_AJ_G0024532.1 mouse_genomes_project 18 72811364 73044032 - MGP_AJ_P0050085 Ctif protein_coding unknown_likely_coding MGP_AJ_T0049249.1 MGP_AJ_G0024226.1 mouse_genomes_project 18 32684573 32703648 + MGP_AJ_P0049249 Gm28285 protein_coding protein_coding MGP_AJ_T0049250.1 MGP_AJ_G0024226.1 mouse_genomes_project 18 32684577 32717070 + MGP_AJ_P0049250 Gm28285 protein_coding protein_coding MGP_AJ_T0049251.1 MGP_AJ_G0024226.1 mouse_genomes_project 18 32684581 32690758 + Gm28285 protein_coding processed_transcript MGP_AJ_T0049252.1 MGP_AJ_G0024226.1 mouse_genomes_project 18 32684581 32703343 + Gm28285 protein_coding processed_transcript MGP_AJ_T0049253.1 MGP_AJ_G0024226.1 mouse_genomes_project 18 32684582 32703571 + MGP_AJ_P0049253 Gm28285 protein_coding protein_coding MGP_AJ_T0049254.1 MGP_AJ_G0024226.1 mouse_genomes_project 18 32684591 32719739 + MGP_AJ_P0049254 Gm28285 protein_coding protein_coding MGP_AJ_T0049255.1 MGP_AJ_G0024226.1 mouse_genomes_project 18 32684607 32703313 + Gm28285 protein_coding processed_transcript MGP_AJ_T0010230.1 MGP_AJ_G0008352.1 mouse_genomes_project 18 3374417 3374500 - Mir1893 miRNA miRNA MGP_AJ_T0010267.1 MGP_AJ_G0008389.1 mouse_genomes_project 18 66108331 66108433 + Mir6356 miRNA miRNA MGP_AJ_T0049599.1 MGP_AJ_G0024369.1 mouse_genomes_project 18 42029168 42090942 + MGP_AJ_P0049599 Ythdc2 protein_coding protein_coding MGP_AJ_T0049600.1 MGP_AJ_G0024369.1 mouse_genomes_project 18 42049439 42050751 + Ythdc2 protein_coding retained_intron MGP_AJ_T0049601.1 MGP_AJ_G0024369.1 mouse_genomes_project 18 42056544 42090949 + MGP_AJ_P0049601 Ythdc2 protein_coding nonsense_mediated_decay MGP_AJ_T0049602.1 MGP_AJ_G0024369.1 mouse_genomes_project 18 42056734 42057223 + Ythdc2 protein_coding retained_intron MGP_AJ_T0003839.1 MGP_AJ_G0003439.1 mouse_genomes_project 18 77681281 77684550 + Gm26676 antisense antisense MGP_AJ_T0049241.1 MGP_AJ_G0024221.1 mouse_genomes_project 18 32056801 32074146 - MGP_AJ_P0049241 Hspa9 protein_coding protein_coding MGP_AJ_T0049242.1 MGP_AJ_G0024221.1 mouse_genomes_project 18 32057654 32058698 - Hspa9 protein_coding retained_intron MGP_AJ_T0049243.1 MGP_AJ_G0024221.1 mouse_genomes_project 18 32058083 32060249 - Hspa9 protein_coding retained_intron MGP_AJ_T0049244.1 MGP_AJ_G0024221.1 mouse_genomes_project 18 32067545 32071364 - Hspa9 protein_coding retained_intron MGP_AJ_T0049033.1 MGP_AJ_G0024131.1 mouse_genomes_project 18 11752434 11801769 + MGP_AJ_P0049033 Psma8 protein_coding protein_coding MGP_AJ_T0050020.1 MGP_AJ_G0024509.1 mouse_genomes_project 18 67817983 67837315 - MGP_AJ_P0050020 4930503L19Rik protein_coding protein_coding MGP_AJ_T0100969.1 MGP_AJ_G0038935.1 mouse_genomes_project 18 72364577 72364643 + Snord58b snoRNA snoRNA MGP_AJ_T0049771.1 MGP_AJ_G0024435.1 mouse_genomes_project 18 58040832 58050323 + MGP_AJ_P0049771 Cd74 protein_coding protein_coding MGP_AJ_T0049772.1 MGP_AJ_G0024435.1 mouse_genomes_project 18 58040832 58050323 + MGP_AJ_P0049772 Cd74 protein_coding protein_coding MGP_AJ_T0049773.1 MGP_AJ_G0024435.1 mouse_genomes_project 18 58040840 58050323 + MGP_AJ_P0049773 Cd74 protein_coding protein_coding MGP_AJ_T0050149.1 MGP_AJ_G0024552.1 mouse_genomes_project 18 75690972 75692557 + MGP_AJ_P0050149 Gm6133 protein_coding protein_coding MGP_AJ_T0011446.1 MGP_AJ_G0009568.1 mouse_genomes_project 18 13272017 13272367 - Gm24385 misc_RNA misc_RNA MGP_AJ_T0051098.1 MGP_AJ_G0024820.1 mouse_genomes_project 19 7416561 7440775 + MGP_AJ_P0051098 Ddb1 protein_coding protein_coding MGP_AJ_T0099735.1 MGP_AJ_G0037701.1 mouse_genomes_project 19 41228909 41229016 - Gm24400 snRNA snRNA MGP_AJ_T0051806.1 MGP_AJ_G0025115.1 mouse_genomes_project 19 39399950 39412135 - MGP_AJ_P0051806 Morn4 protein_coding protein_coding MGP_AJ_T0013390.1 MGP_AJ_G0011485.1 mouse_genomes_project 19 25804450 25804720 - processed_pseudogene processed_pseudogene MGP_AJ_T0052017.1 MGP_AJ_G0025179.1 mouse_genomes_project 19 43721499 43728833 + MGP_AJ_P0052017 Nfkb2 protein_coding protein_coding MGP_AJ_T0052018.1 MGP_AJ_G0025179.1 mouse_genomes_project 19 43722457 43728833 + MGP_AJ_P0052018 Nfkb2 protein_coding protein_coding MGP_AJ_T0001016.1 MGP_AJ_G0000947.1 mouse_genomes_project 19 11558831 11559098 + TEC TEC MGP_AJ_T0003879.1 MGP_AJ_G0003468.1 mouse_genomes_project 19 53905544 53907524 + Gm17197 antisense antisense MGP_AJ_T0051088.1 MGP_AJ_G0024815.1 mouse_genomes_project 19 7333319 7356974 + MGP_AJ_P0051088 Cpsf7 protein_coding protein_coding MGP_AJ_T0051695.1 MGP_AJ_G0025074.1 mouse_genomes_project 19 36328732 36360201 + MGP_AJ_P0051695 Cyp2c65 protein_coding protein_coding MGP_AJ_T0007119.1 MGP_AJ_G0005838.1 mouse_genomes_project 19 54882446 54919193 - B230217O12Rik lincRNA lincRNA MGP_AJ_T0052111.1 MGP_AJ_G0025217.1 mouse_genomes_project 19 49739359 49740493 + MGP_AJ_P0052111 Ins1 protein_coding protein_coding MGP_AJ_T0051174.1 MGP_AJ_G0024847.1 mouse_genomes_project 19 8283743 8301139 + protein_coding retained_intron MGP_AJ_T0051175.1 MGP_AJ_G0024847.1 mouse_genomes_project 19 8283743 8380707 + protein_coding retained_intron MGP_AJ_T0051176.1 MGP_AJ_G0024847.1 mouse_genomes_project 19 8283748 8301139 + protein_coding retained_intron MGP_AJ_T0051177.1 MGP_AJ_G0024847.1 mouse_genomes_project 19 8283763 8304286 + MGP_AJ_P0051177 protein_coding protein_coding MGP_AJ_T0051178.1 MGP_AJ_G0024847.1 mouse_genomes_project 19 8301876 8304026 + protein_coding retained_intron MGP_AJ_T0051179.1 MGP_AJ_G0024847.1 mouse_genomes_project 19 8301992 8304026 + protein_coding processed_transcript MGP_AJ_T0051180.1 MGP_AJ_G0024847.1 mouse_genomes_project 19 8303226 8304026 + protein_coding retained_intron MGP_AJ_T0010314.1 MGP_AJ_G0008436.1 mouse_genomes_project 19 41679825 41679886 + Mir5114 miRNA miRNA MGP_AJ_T0051294.1 MGP_AJ_G0024923.1 mouse_genomes_project 19 10674363 10675452 + MGP_AJ_P0051294 Olfr1495 protein_coding protein_coding MGP_AJ_T0050868.1 MGP_AJ_G0024749.1 mouse_genomes_project 19 3786782 3806466 - MGP_AJ_P0050868 Stip1 protein_coding protein_coding MGP_AJ_T0100987.1 MGP_AJ_G0038953.1 mouse_genomes_project 19 5840444 5840592 - Snora57 snoRNA snoRNA MGP_AJ_T0050578.1 MGP_AJ_G0024679.1 mouse_genomes_project 19 2330006 2345238 - MGP_AJ_P0050578 Snx32 protein_coding protein_coding MGP_AJ_T0051569.1 MGP_AJ_G0025025.1 mouse_genomes_project 19 30837677 30852506 - MGP_AJ_P0051569 Lipo4 protein_coding protein_coding MGP_AJ_T0051570.1 MGP_AJ_G0025025.1 mouse_genomes_project 19 30838372 30852505 - MGP_AJ_P0051570 Lipo4 protein_coding protein_coding MGP_AJ_T0050878.1 MGP_AJ_G0024755.1 mouse_genomes_project 19 4040951 4043771 + MGP_AJ_P0050878 Rcor2 protein_coding protein_coding MGP_AJ_T0050879.1 MGP_AJ_G0024755.1 mouse_genomes_project 19 4042588 4048858 + MGP_AJ_P0050879 Rcor2 protein_coding protein_coding MGP_AJ_T0050880.1 MGP_AJ_G0024755.1 mouse_genomes_project 19 4044578 4045396 + Rcor2 protein_coding retained_intron MGP_AJ_T0051558.1 MGP_AJ_G0025018.1 mouse_genomes_project 19 29704109 29751018 + MGP_AJ_P0051558 Papss2 protein_coding protein_coding MGP_AJ_T0050363.1 MGP_AJ_G0024611.1 mouse_genomes_project 19 899396 901015 + Cdk2ap2 protein_coding retained_intron MGP_AJ_T0050364.1 MGP_AJ_G0024611.1 mouse_genomes_project 19 899396 900461 + MGP_AJ_P0050364 Cdk2ap2 protein_coding protein_coding MGP_AJ_T0050365.1 MGP_AJ_G0024611.1 mouse_genomes_project 19 899397 901006 + MGP_AJ_P0050365 Cdk2ap2 protein_coding nonsense_mediated_decay MGP_AJ_T0050366.1 MGP_AJ_G0024611.1 mouse_genomes_project 19 899421 901013 + MGP_AJ_P0050366 Cdk2ap2 protein_coding protein_coding MGP_AJ_T0051799.1 MGP_AJ_G0025111.1 mouse_genomes_project 19 39303340 39359781 + MGP_AJ_P0051799 Ubtd1 protein_coding protein_coding MGP_AJ_T0011475.1 MGP_AJ_G0009597.1 mouse_genomes_project 19 13991258 13991665 - Gm27970 misc_RNA misc_RNA MGP_AJ_T0051339.1 MGP_AJ_G0024946.1 mouse_genomes_project 19 15661178 15667576 + MGP_AJ_P0051339 D030056L22Rik protein_coding protein_coding MGP_AJ_T0051340.1 MGP_AJ_G0024946.1 mouse_genomes_project 19 15661221 15667576 + MGP_AJ_P0051340 D030056L22Rik protein_coding protein_coding MGP_AJ_T0051611.1 MGP_AJ_G0025047.1 mouse_genomes_project 19 33568188 33648319 + MGP_AJ_P0051611 Pcgf5 protein_coding protein_coding MGP_AJ_T0051612.1 MGP_AJ_G0025047.1 mouse_genomes_project 19 33601510 33648319 + MGP_AJ_P0051612 Pcgf5 protein_coding protein_coding MGP_AJ_T0051613.1 MGP_AJ_G0025047.1 mouse_genomes_project 19 33601535 33653102 + MGP_AJ_P0051613 Pcgf5 protein_coding unknown_likely_coding MGP_AJ_T0051808.1 MGP_AJ_G0025117.1 mouse_genomes_project 19 39449611 39455398 - MGP_AJ_P0051808 Avpi1 protein_coding protein_coding MGP_AJ_T0051809.1 MGP_AJ_G0025117.1 mouse_genomes_project 19 39451117 39455328 - MGP_AJ_P0051809 Avpi1 protein_coding protein_coding MGP_AJ_T0051998.1 MGP_AJ_G0025176.1 mouse_genomes_project 19 43547620 43551009 + MGP_AJ_P0051998 Elovl3 protein_coding protein_coding MGP_AJ_T0051999.1 MGP_AJ_G0025177.1 mouse_genomes_project 19 43551386 43564104 - MGP_AJ_P0051999 Pitx3 protein_coding protein_coding MGP_AJ_T0052000.1 MGP_AJ_G0025177.1 mouse_genomes_project 19 43552196 43552991 - Pitx3 protein_coding retained_intron MGP_AJ_T0052001.1 MGP_AJ_G0025177.1 mouse_genomes_project 19 43552733 43556691 - MGP_AJ_P0052001 Pitx3 protein_coding protein_coding MGP_AJ_T0051919.1 MGP_AJ_G0025153.1 mouse_genomes_project 19 42149177 42236428 + MGP_AJ_P0051919 Pax2 protein_coding protein_coding MGP_AJ_T0051920.1 MGP_AJ_G0025153.1 mouse_genomes_project 19 42150410 42236448 + MGP_AJ_P0051920 Pax2 protein_coding protein_coding MGP_AJ_T0051921.1 MGP_AJ_G0025153.1 mouse_genomes_project 19 42152991 42216403 + MGP_AJ_P0051921 Pax2 protein_coding protein_coding MGP_AJ_T0050547.1 MGP_AJ_G0024672.1 mouse_genomes_project 19 2282359 2290591 + MGP_AJ_P0050547 Fosl1 protein_coding protein_coding MGP_AJ_T0098430.1 MGP_AJ_G0036414.1 mouse_genomes_project 19 10782122 10782919 + pseudogene pseudogene MGP_AJ_T0100999.1 MGP_AJ_G0038965.1 mouse_genomes_project 19 32923257 32923390 - Gm25611 snoRNA snoRNA MGP_AJ_T0050990.1 MGP_AJ_G0024777.1 mouse_genomes_project 19 5745567 5750747 - MGP_AJ_P0050990 Polr2g protein_coding protein_coding MGP_AJ_T0003860.1 MGP_AJ_G0003453.1 mouse_genomes_project 19 8391737 8392480 - Gm19261 antisense antisense MGP_AJ_T0050913.1 MGP_AJ_G0024761.1 mouse_genomes_project 19 4352330 4384017 + MGP_AJ_P0050913 Pla2g16 protein_coding protein_coding MGP_AJ_T0050914.1 MGP_AJ_G0024761.1 mouse_genomes_project 19 4352330 4377200 + MGP_AJ_P0050914 Pla2g16 protein_coding protein_coding MGP_AJ_T0050915.1 MGP_AJ_G0024761.1 mouse_genomes_project 19 4352348 4374609 + MGP_AJ_P0050915 Pla2g16 protein_coding protein_coding MGP_AJ_T0050916.1 MGP_AJ_G0024761.1 mouse_genomes_project 19 4352356 4382183 + MGP_AJ_P0050916 Pla2g16 protein_coding protein_coding MGP_AJ_T0010284.1 MGP_AJ_G0008406.1 mouse_genomes_project 19 3129635 3129724 + Mir192 miRNA miRNA MGP_AJ_T0013392.1 MGP_AJ_G0011487.1 mouse_genomes_project 19 27236941 27237433 + processed_pseudogene processed_pseudogene MGP_AJ_T0051102.1 MGP_AJ_G0024823.1 mouse_genomes_project 19 7518623 7529909 + MGP_AJ_P0051102 Vps37c protein_coding unknown_likely_coding MGP_AJ_T0050273.1 MGP_AJ_G0024592.1 mouse_genomes_project 19 178163 182706 - MGP_AJ_P0050273 Gal protein_coding protein_coding MGP_AJ_T0050996.1 MGP_AJ_G0024780.1 mouse_genomes_project 19 5771850 5786659 + MGP_AJ_P0050996 Hnrnpul2 protein_coding protein_coding MGP_AJ_T0052185.1 MGP_AJ_G0025238.1 mouse_genomes_project 19 53861807 53932000 - MGP_AJ_P0052185 Nrap protein_coding protein_coding MGP_AJ_T0052186.1 MGP_AJ_G0025238.1 mouse_genomes_project 19 53861813 53932026 - MGP_AJ_P0052186 Nrap protein_coding protein_coding MGP_AJ_T0052187.1 MGP_AJ_G0025238.1 mouse_genomes_project 19 53861873 53932024 - MGP_AJ_P0052187 Nrap protein_coding protein_coding MGP_AJ_T0052188.1 MGP_AJ_G0025238.1 mouse_genomes_project 19 53861898 53932024 - MGP_AJ_P0052188 Nrap protein_coding protein_coding MGP_AJ_T0052189.1 MGP_AJ_G0025238.1 mouse_genomes_project 19 53861964 53921128 - MGP_AJ_P0052189 Nrap protein_coding nonsense_mediated_decay MGP_AJ_T0052190.1 MGP_AJ_G0025238.1 mouse_genomes_project 19 53861967 53931866 - MGP_AJ_P0052190 Nrap protein_coding protein_coding MGP_AJ_T0013377.1 MGP_AJ_G0011472.1 mouse_genomes_project 19 6257928 6259861 - processed_pseudogene processed_pseudogene MGP_AJ_T0051566.1 MGP_AJ_G0025023.1 mouse_genomes_project 19 30607407 30654742 - MGP_AJ_P0051566 protein_coding protein_coding MGP_AJ_T0051538.1 MGP_AJ_G0025013.1 mouse_genomes_project 19 28164815 28168565 + MGP_AJ_P0051538 Cstf2t protein_coding protein_coding MGP_AJ_T0003861.1 MGP_AJ_G0003454.1 mouse_genomes_project 19 9540043 9555203 - Gm15962 antisense antisense MGP_AJ_T0003862.1 MGP_AJ_G0003454.1 mouse_genomes_project 19 9549781 9555247 - Gm15962 antisense antisense MGP_AJ_T0017673.1 MGP_AJ_G0015353.1 mouse_genomes_project 19 3488349 3548390 - 2410152P15Rik processed_transcript processed_transcript MGP_AJ_T0051714.1 MGP_AJ_G0025087.1 mouse_genomes_project 19 37486346 37545706 - MGP_AJ_P0051714 Pdlim1 protein_coding protein_coding MGP_AJ_T0051715.1 MGP_AJ_G0025087.1 mouse_genomes_project 19 37487536 37488530 - Pdlim1 protein_coding retained_intron MGP_AJ_T0051716.1 MGP_AJ_G0025087.1 mouse_genomes_project 19 37487696 37505511 - Pdlim1 protein_coding retained_intron MGP_AJ_T0051717.1 MGP_AJ_G0025087.1 mouse_genomes_project 19 37505297 37545932 - MGP_AJ_P0051717 Pdlim1 protein_coding protein_coding MGP_AJ_T0051718.1 MGP_AJ_G0025087.1 mouse_genomes_project 19 37521353 37545706 - Pdlim1 protein_coding retained_intron MGP_AJ_T0051134.1 MGP_AJ_G0024832.1 mouse_genomes_project 19 7761412 7767265 - Ccdc86 protein_coding processed_transcript MGP_AJ_T0051135.1 MGP_AJ_G0024832.1 mouse_genomes_project 19 7761412 7769139 - MGP_AJ_P0051135 Ccdc86 protein_coding protein_coding MGP_AJ_T0051136.1 MGP_AJ_G0024832.1 mouse_genomes_project 19 7765440 7769124 - Ccdc86 protein_coding retained_intron MGP_AJ_T0007120.1 MGP_AJ_G0005839.1 mouse_genomes_project 19 56191558 56216989 + 1810007D17Rik lincRNA lincRNA MGP_AJ_T0051078.1 MGP_AJ_G0024810.1 mouse_genomes_project 19 7052004 7080936 - MGP_AJ_P0051078 protein_coding unknown_likely_coding MGP_AJ_T0051079.1 MGP_AJ_G0024810.1 mouse_genomes_project 19 7052012 7111651 - MGP_AJ_P0051079 protein_coding nonsense_mediated_decay MGP_AJ_T0051080.1 MGP_AJ_G0024810.1 mouse_genomes_project 19 7060074 7063616 - protein_coding processed_transcript MGP_AJ_T0050605.1 MGP_AJ_G0024688.1 mouse_genomes_project 19 2528256 2541991 + MGP_AJ_P0050605 Map3k11 protein_coding protein_coding MGP_AJ_T0050495.1 MGP_AJ_G0024647.1 mouse_genomes_project 19 1726169 1747012 - MGP_AJ_P0050495 Dpp3 protein_coding protein_coding MGP_AJ_T0051237.1 MGP_AJ_G0024881.1 mouse_genomes_project 19 9297468 9301896 + MGP_AJ_P0051237 Mpeg1 protein_coding protein_coding MGP_AJ_T0010319.1 MGP_AJ_G0008441.1 mouse_genomes_project 19 45381851 45381933 - Gm22240 miRNA miRNA MGP_AJ_T0050934.1 MGP_AJ_G0024770.1 mouse_genomes_project 19 5615369 5629589 + MGP_AJ_P0050934 Chrm1 protein_coding protein_coding MGP_AJ_T0050935.1 MGP_AJ_G0024770.1 mouse_genomes_project 19 5615587 5635022 + MGP_AJ_P0050935 Chrm1 protein_coding protein_coding MGP_AJ_T0050936.1 MGP_AJ_G0024770.1 mouse_genomes_project 19 5615587 5633002 + MGP_AJ_P0050936 Chrm1 protein_coding protein_coding MGP_AJ_T0051442.1 MGP_AJ_G0024985.1 mouse_genomes_project 19 24353958 24368627 + MGP_AJ_P0051442 Kcnv2 protein_coding protein_coding MGP_AJ_T0051759.1 MGP_AJ_G0025098.1 mouse_genomes_project 19 38525648 38578849 - MGP_AJ_P0051759 Tm9sf3 protein_coding protein_coding MGP_AJ_T0051669.1 MGP_AJ_G0025065.1 mouse_genomes_project 19 35350944 35402236 + MGP_AJ_P0051669 Pde6c protein_coding protein_coding MGP_AJ_T0051670.1 MGP_AJ_G0025065.1 mouse_genomes_project 19 35350944 35402236 + MGP_AJ_P0051670 Pde6c protein_coding protein_coding MGP_AJ_T0051671.1 MGP_AJ_G0025065.1 mouse_genomes_project 19 35351109 35402028 + MGP_AJ_P0051671 Pde6c protein_coding unknown_likely_coding MGP_AJ_T0051232.1 MGP_AJ_G0024876.1 mouse_genomes_project 19 9116291 9117118 - MGP_AJ_P0051232 protein_coding protein_coding MGP_AJ_T0099738.1 MGP_AJ_G0037704.1 mouse_genomes_project 19 45158815 45158919 - Gm24805 snRNA snRNA MGP_AJ_T0051171.1 MGP_AJ_G0024846.1 mouse_genomes_project 19 8229461 8241010 + MGP_AJ_P0051171 Ms4a4c protein_coding protein_coding MGP_AJ_T0051172.1 MGP_AJ_G0024846.1 mouse_genomes_project 19 8232350 8249203 + MGP_AJ_P0051172 Ms4a4c protein_coding protein_coding MGP_AJ_T0051173.1 MGP_AJ_G0024846.1 mouse_genomes_project 19 8239431 8248425 + MGP_AJ_P0051173 Ms4a4c protein_coding protein_coding MGP_AJ_T0051876.1 MGP_AJ_G0025139.1 mouse_genomes_project 19 41408442 41443188 - MGP_AJ_P0051876 Erlin1 protein_coding protein_coding MGP_AJ_T0051877.1 MGP_AJ_G0025139.1 mouse_genomes_project 19 41408442 41443437 - MGP_AJ_P0051877 Erlin1 protein_coding protein_coding MGP_AJ_T0051878.1 MGP_AJ_G0025139.1 mouse_genomes_project 19 41408442 41443447 - MGP_AJ_P0051878 Erlin1 protein_coding protein_coding MGP_AJ_T0051879.1 MGP_AJ_G0025139.1 mouse_genomes_project 19 41429616 41443418 - MGP_AJ_P0051879 Erlin1 protein_coding protein_coding MGP_AJ_T0051880.1 MGP_AJ_G0025139.1 mouse_genomes_project 19 41432709 41443059 - MGP_AJ_P0051880 Erlin1 protein_coding nonsense_mediated_decay MGP_AJ_T0051881.1 MGP_AJ_G0025139.1 mouse_genomes_project 19 41432711 41441348 - MGP_AJ_P0051881 Erlin1 protein_coding protein_coding MGP_AJ_T0051882.1 MGP_AJ_G0025139.1 mouse_genomes_project 19 41439736 41443406 - Erlin1 protein_coding retained_intron MGP_AJ_T0051883.1 MGP_AJ_G0025139.1 mouse_genomes_project 19 41441137 41443358 - Erlin1 protein_coding retained_intron MGP_AJ_T0051884.1 MGP_AJ_G0025139.1 mouse_genomes_project 19 41442979 41443352 - MGP_AJ_P0051884 Erlin1 protein_coding protein_coding MGP_AJ_T0099719.1 MGP_AJ_G0037685.1 mouse_genomes_project 19 4019998 4020102 + Gm22113 snRNA snRNA MGP_AJ_T0051278.1 MGP_AJ_G0024907.1 mouse_genomes_project 19 10072119 10073052 + MGP_AJ_P0051278 Olfr1463 protein_coding protein_coding MGP_AJ_T0051598.1 MGP_AJ_G0025040.1 mouse_genomes_project 19 31784594 31793723 + MGP_AJ_P0051598 Ifit1 protein_coding protein_coding MGP_AJ_T0050867.1 MGP_AJ_G0024748.1 mouse_genomes_project 19 3762581 3785556 - MGP_AJ_P0050867 Fermt3 protein_coding protein_coding MGP_AJ_T0100980.1 MGP_AJ_G0038946.1 mouse_genomes_project 19 5675946 5676021 + Gm25894 snoRNA snoRNA MGP_AJ_T0003844.1 MGP_AJ_G0003444.1 mouse_genomes_project 19 2241688 2253453 + 4930481A15Rik antisense antisense MGP_AJ_T0003845.1 MGP_AJ_G0003444.1 mouse_genomes_project 19 2241688 2253446 + 4930481A15Rik antisense antisense MGP_AJ_T0003846.1 MGP_AJ_G0003444.1 mouse_genomes_project 19 2241688 2253549 + 4930481A15Rik antisense antisense MGP_AJ_T0003847.1 MGP_AJ_G0003444.1 mouse_genomes_project 19 2241736 2258700 + 4930481A15Rik antisense antisense MGP_AJ_T0100981.1 MGP_AJ_G0038947.1 mouse_genomes_project 19 5676226 5676298 + Gm24452 snoRNA snoRNA MGP_AJ_T0052129.1 MGP_AJ_G0025222.1 mouse_genomes_project 19 50878505 50889882 - MGP_AJ_P0052129 Smndc1 protein_coding protein_coding MGP_AJ_T0007099.1 MGP_AJ_G0005824.1 mouse_genomes_project 19 38169637 38178252 + E030044B06Rik lincRNA lincRNA MGP_AJ_T0050965.1 MGP_AJ_G0024775.1 mouse_genomes_project 19 5709048 5722920 + MGP_AJ_P0050965 Nxf1 protein_coding protein_coding MGP_AJ_T0050966.1 MGP_AJ_G0024775.1 mouse_genomes_project 19 5709082 5724454 + MGP_AJ_P0050966 Nxf1 protein_coding protein_coding MGP_AJ_T0050967.1 MGP_AJ_G0024775.1 mouse_genomes_project 19 5709094 5719611 + Nxf1 protein_coding processed_transcript MGP_AJ_T0050968.1 MGP_AJ_G0024775.1 mouse_genomes_project 19 5709125 5717289 + MGP_AJ_P0050968 Nxf1 protein_coding protein_coding MGP_AJ_T0050969.1 MGP_AJ_G0024775.1 mouse_genomes_project 19 5709125 5715737 + MGP_AJ_P0050969 Nxf1 protein_coding nonsense_mediated_decay MGP_AJ_T0050970.1 MGP_AJ_G0024775.1 mouse_genomes_project 19 5716931 5719394 + MGP_AJ_P0050970 Nxf1 protein_coding protein_coding MGP_AJ_T0050971.1 MGP_AJ_G0024775.1 mouse_genomes_project 19 5718674 5721165 + Nxf1 protein_coding retained_intron MGP_AJ_T0050972.1 MGP_AJ_G0024775.1 mouse_genomes_project 19 5719008 5719885 + Nxf1 protein_coding retained_intron MGP_AJ_T0050973.1 MGP_AJ_G0024775.1 mouse_genomes_project 19 5720632 5722847 + MGP_AJ_P0050973 Nxf1 protein_coding protein_coding MGP_AJ_T0050974.1 MGP_AJ_G0024775.1 mouse_genomes_project 19 5722089 5722919 + Nxf1 protein_coding processed_transcript MGP_AJ_T0050975.1 MGP_AJ_G0024775.1 mouse_genomes_project 19 5722133 5722860 + Nxf1 protein_coding retained_intron MGP_AJ_T0050976.1 MGP_AJ_G0024775.1 mouse_genomes_project 19 5722993 5724473 + MGP_AJ_P0050976 Nxf1 protein_coding protein_coding MGP_AJ_T0003856.1 MGP_AJ_G0003450.1 mouse_genomes_project 19 4071279 4078150 + Gm17227 antisense antisense MGP_AJ_T0003857.1 MGP_AJ_G0003450.1 mouse_genomes_project 19 4071355 4077972 + Gm17227 antisense antisense MGP_AJ_T0052258.1 MGP_AJ_G0025255.1 mouse_genomes_project 19 56317238 56332459 + MGP_AJ_P0052258 Pnliprp1 protein_coding protein_coding MGP_AJ_T0052257.1 MGP_AJ_G0025254.1 mouse_genomes_project 19 56257803 56269296 + MGP_AJ_P0052257 Pnlip protein_coding protein_coding MGP_AJ_T0051747.1 MGP_AJ_G0025092.1 mouse_genomes_project 19 38133160 38150282 + MGP_AJ_P0051747 Ccnj protein_coding protein_coding MGP_AJ_T0051748.1 MGP_AJ_G0025092.1 mouse_genomes_project 19 38133160 38150282 + MGP_AJ_P0051748 Ccnj protein_coding protein_coding MGP_AJ_T0051749.1 MGP_AJ_G0025092.1 mouse_genomes_project 19 38133189 38149719 + MGP_AJ_P0051749 Ccnj protein_coding protein_coding MGP_AJ_T0050944.1 MGP_AJ_G0024772.1 mouse_genomes_project 19 5687401 5692601 + MGP_AJ_P0050944 Wdr74 protein_coding protein_coding MGP_AJ_T0050453.1 MGP_AJ_G0024632.1 mouse_genomes_project 19 1318277 1431991 + MGP_AJ_P0050453 Pcx protein_coding protein_coding MGP_AJ_T0050454.1 MGP_AJ_G0024632.1 mouse_genomes_project 19 1318311 1421005 + MGP_AJ_P0050454 Pcx protein_coding unknown_likely_coding MGP_AJ_T0050455.1 MGP_AJ_G0024632.1 mouse_genomes_project 19 1404734 1431991 + MGP_AJ_P0050455 Pcx protein_coding protein_coding MGP_AJ_T0052085.1 MGP_AJ_G0025208.1 mouse_genomes_project 19 45085751 45136152 - MGP_AJ_P0052085 Col17a1 protein_coding protein_coding MGP_AJ_T0052086.1 MGP_AJ_G0025208.1 mouse_genomes_project 19 45085751 45136152 - MGP_AJ_P0052086 Col17a1 protein_coding protein_coding MGP_AJ_T0052087.1 MGP_AJ_G0025208.1 mouse_genomes_project 19 45087507 45089003 - Col17a1 protein_coding processed_transcript MGP_AJ_T0052088.1 MGP_AJ_G0025208.1 mouse_genomes_project 19 45109459 45113109 - Col17a1 protein_coding processed_transcript MGP_AJ_T0051104.1 MGP_AJ_G0024825.1 mouse_genomes_project 19 7607041 7646963 - MGP_AJ_P0051104 Cd6 protein_coding protein_coding MGP_AJ_T0051105.1 MGP_AJ_G0024825.1 mouse_genomes_project 19 7607046 7616452 - Cd6 protein_coding retained_intron MGP_AJ_T0051106.1 MGP_AJ_G0024825.1 mouse_genomes_project 19 7607049 7646869 - MGP_AJ_P0051106 Cd6 protein_coding protein_coding MGP_AJ_T0051107.1 MGP_AJ_G0024825.1 mouse_genomes_project 19 7608692 7610695 - Cd6 protein_coding retained_intron MGP_AJ_T0051108.1 MGP_AJ_G0024825.1 mouse_genomes_project 19 7612265 7646761 - MGP_AJ_P0051108 Cd6 protein_coding protein_coding MGP_AJ_T0098640.1 MGP_AJ_G0036624.1 mouse_genomes_project 19 4033567 4033688 + Gm23997 rRNA rRNA MGP_AJ_T0050857.1 MGP_AJ_G0024743.1 mouse_genomes_project 19 3741048 3743772 - MGP_AJ_P0050857 Fkbp2 protein_coding protein_coding MGP_AJ_T0050858.1 MGP_AJ_G0024743.1 mouse_genomes_project 19 3741048 3743751 - MGP_AJ_P0050858 Fkbp2 protein_coding protein_coding MGP_AJ_T0011478.1 MGP_AJ_G0009600.1 mouse_genomes_project 19 27342890 27343171 + Gm24883 misc_RNA misc_RNA MGP_AJ_T0051221.1 MGP_AJ_G0024865.1 mouse_genomes_project 19 8791754 8824250 + MGP_AJ_P0051221 Patl1 protein_coding protein_coding MGP_AJ_T0051194.1 MGP_AJ_G0024852.1 mouse_genomes_project 19 8464846 8478020 - MGP_AJ_P0051194 Ms4a6d protein_coding protein_coding MGP_AJ_T0051195.1 MGP_AJ_G0024852.1 mouse_genomes_project 19 8465225 8472943 - Ms4a6d protein_coding processed_transcript MGP_AJ_T0051196.1 MGP_AJ_G0024852.1 mouse_genomes_project 19 8466212 8473037 - Ms4a6d protein_coding retained_intron MGP_AJ_T0017719.1 MGP_AJ_G0015365.1 mouse_genomes_project 19 57524211 57528875 + Gm4219 processed_transcript processed_transcript MGP_AJ_T0050480.1 MGP_AJ_G0024640.1 mouse_genomes_project 19 1618435 1629475 - MGP_AJ_P0050480 Rbm14 protein_coding protein_coding MGP_AJ_T0050481.1 MGP_AJ_G0024640.1 mouse_genomes_project 19 1618788 1629426 - MGP_AJ_P0050481 Rbm14 protein_coding protein_coding MGP_AJ_T0050482.1 MGP_AJ_G0024640.1 mouse_genomes_project 19 1619643 1629353 - MGP_AJ_P0050482 Rbm14 protein_coding protein_coding MGP_AJ_T0051659.1 MGP_AJ_G0025060.1 mouse_genomes_project 19 34916446 34920168 + MGP_AJ_P0051659 Cyp26a1 protein_coding protein_coding MGP_AJ_T0003864.1 MGP_AJ_G0003456.1 mouse_genomes_project 19 21397721 21412042 + Pip5k1bos antisense antisense MGP_AJ_T0050339.1 MGP_AJ_G0024606.1 mouse_genomes_project 19 778928 780452 + MGP_AJ_P0050339 Nudt8 protein_coding protein_coding MGP_AJ_T0050340.1 MGP_AJ_G0024606.1 mouse_genomes_project 19 778974 784857 + MGP_AJ_P0050340 Nudt8 protein_coding nonsense_mediated_decay MGP_AJ_T0050341.1 MGP_AJ_G0024606.1 mouse_genomes_project 19 778979 780450 + MGP_AJ_P0050341 Nudt8 protein_coding protein_coding MGP_AJ_T0101006.1 MGP_AJ_G0038972.1 mouse_genomes_project 19 58377530 58377662 - Snora19 snoRNA snoRNA MGP_AJ_T0050920.1 MGP_AJ_G0024763.1 mouse_genomes_project 19 4408269 4410476 + Hrasls5 protein_coding retained_intron MGP_AJ_T0050921.1 MGP_AJ_G0024763.1 mouse_genomes_project 19 4408283 4437883 + MGP_AJ_P0050921 Hrasls5 protein_coding protein_coding MGP_AJ_T0050922.1 MGP_AJ_G0024763.1 mouse_genomes_project 19 4408333 4438282 + MGP_AJ_P0050922 Hrasls5 protein_coding protein_coding MGP_AJ_T0051493.1 MGP_AJ_G0025001.1 mouse_genomes_project 19 26574938 26661455 + MGP_AJ_P0051493 Ric1 protein_coding protein_coding MGP_AJ_T0051494.1 MGP_AJ_G0025001.1 mouse_genomes_project 19 26574991 26617684 + MGP_AJ_P0051494 Ric1 protein_coding protein_coding MGP_AJ_T0051495.1 MGP_AJ_G0025001.1 mouse_genomes_project 19 26575038 26635551 + Ric1 protein_coding retained_intron MGP_AJ_T0051496.1 MGP_AJ_G0025001.1 mouse_genomes_project 19 26585869 26658804 + MGP_AJ_P0051496 Ric1 protein_coding protein_coding MGP_AJ_T0051497.1 MGP_AJ_G0025001.1 mouse_genomes_project 19 26650133 26659789 + MGP_AJ_P0051497 Ric1 protein_coding nonsense_mediated_decay MGP_AJ_T0051498.1 MGP_AJ_G0025001.1 mouse_genomes_project 19 26651865 26654501 + Ric1 protein_coding retained_intron MGP_AJ_T0051499.1 MGP_AJ_G0025001.1 mouse_genomes_project 19 26652450 26660500 + MGP_AJ_P0051499 Ric1 protein_coding nonsense_mediated_decay MGP_AJ_T0051928.1 MGP_AJ_G0025158.1 mouse_genomes_project 19 42413621 42425620 + MGP_AJ_P0051928 Lzts2 protein_coding protein_coding MGP_AJ_T0051929.1 MGP_AJ_G0025158.1 mouse_genomes_project 19 42413655 42425620 + MGP_AJ_P0051929 Lzts2 protein_coding protein_coding MGP_AJ_T0051930.1 MGP_AJ_G0025158.1 mouse_genomes_project 19 42416670 42425620 + MGP_AJ_P0051930 Lzts2 protein_coding protein_coding MGP_AJ_T0050828.1 MGP_AJ_G0024732.1 mouse_genomes_project 19 3587280 3598683 - MGP_AJ_P0050828 Rps6ka4 protein_coding protein_coding MGP_AJ_T0050582.1 MGP_AJ_G0024683.1 mouse_genomes_project 19 2439167 2440734 + MGP_AJ_P0050582 Rnaseh2c protein_coding protein_coding MGP_AJ_T0050583.1 MGP_AJ_G0024683.1 mouse_genomes_project 19 2439181 2440162 + Rnaseh2c protein_coding retained_intron MGP_AJ_T0050584.1 MGP_AJ_G0024683.1 mouse_genomes_project 19 2439269 2440227 + Rnaseh2c protein_coding retained_intron MGP_AJ_T0050585.1 MGP_AJ_G0024683.1 mouse_genomes_project 19 2439529 2440233 + MGP_AJ_P0050585 Rnaseh2c protein_coding protein_coding MGP_AJ_T0050586.1 MGP_AJ_G0024683.1 mouse_genomes_project 19 2439704 2440229 + Rnaseh2c protein_coding retained_intron MGP_AJ_T0051354.1 MGP_AJ_G0024950.1 mouse_genomes_project 19 17576508 17619326 + MGP_AJ_P0051354 Aldh1a1 protein_coding protein_coding MGP_AJ_T0098643.1 MGP_AJ_G0036627.1 mouse_genomes_project 19 40504514 40504622 - Gm22135 rRNA rRNA MGP_AJ_T0017674.1 MGP_AJ_G0015354.1 mouse_genomes_project 19 5675184 5678139 + Snhg1 processed_transcript lincRNA MGP_AJ_T0017675.1 MGP_AJ_G0015354.1 mouse_genomes_project 19 5675196 5678138 + Snhg1 processed_transcript retained_intron MGP_AJ_T0017676.1 MGP_AJ_G0015354.1 mouse_genomes_project 19 5675196 5678137 + Snhg1 processed_transcript retained_intron MGP_AJ_T0017677.1 MGP_AJ_G0015354.1 mouse_genomes_project 19 5675700 5678139 + Snhg1 processed_transcript lincRNA MGP_AJ_T0017678.1 MGP_AJ_G0015354.1 mouse_genomes_project 19 5675826 5677588 + Snhg1 processed_transcript retained_intron MGP_AJ_T0017679.1 MGP_AJ_G0015354.1 mouse_genomes_project 19 5675835 5676548 + Snhg1 processed_transcript retained_intron MGP_AJ_T0017680.1 MGP_AJ_G0015354.1 mouse_genomes_project 19 5675842 5678041 + Snhg1 processed_transcript lincRNA MGP_AJ_T0017681.1 MGP_AJ_G0015354.1 mouse_genomes_project 19 5675853 5678139 + Snhg1 processed_transcript retained_intron MGP_AJ_T0017682.1 MGP_AJ_G0015354.1 mouse_genomes_project 19 5675857 5677037 + Snhg1 processed_transcript retained_intron MGP_AJ_T0017683.1 MGP_AJ_G0015354.1 mouse_genomes_project 19 5676051 5676999 + Snhg1 processed_transcript retained_intron MGP_AJ_T0017684.1 MGP_AJ_G0015354.1 mouse_genomes_project 19 5676088 5677531 + Snhg1 processed_transcript retained_intron MGP_AJ_T0017685.1 MGP_AJ_G0015354.1 mouse_genomes_project 19 5676098 5677218 + Snhg1 processed_transcript retained_intron MGP_AJ_T0017686.1 MGP_AJ_G0015354.1 mouse_genomes_project 19 5676358 5678139 + Snhg1 processed_transcript retained_intron MGP_AJ_T0017687.1 MGP_AJ_G0015354.1 mouse_genomes_project 19 5676592 5678139 + Snhg1 processed_transcript retained_intron MGP_AJ_T0017688.1 MGP_AJ_G0015354.1 mouse_genomes_project 19 5676717 5677698 + Snhg1 processed_transcript retained_intron MGP_AJ_T0017689.1 MGP_AJ_G0015354.1 mouse_genomes_project 19 5676799 5678139 + Snhg1 processed_transcript retained_intron MGP_AJ_T0017690.1 MGP_AJ_G0015354.1 mouse_genomes_project 19 5677170 5678139 + Snhg1 processed_transcript retained_intron MGP_AJ_T0017691.1 MGP_AJ_G0015354.1 mouse_genomes_project 19 5677195 5678139 + Snhg1 processed_transcript lincRNA MGP_AJ_T0098434.1 MGP_AJ_G0036418.1 mouse_genomes_project 19 58568122 58568705 - pseudogene pseudogene MGP_AJ_T0051148.1 MGP_AJ_G0024838.1 mouse_genomes_project 19 7970047 7993608 - MGP_AJ_P0051148 1700025F22Rik protein_coding protein_coding MGP_AJ_T0051149.1 MGP_AJ_G0024838.1 mouse_genomes_project 19 7970047 7987673 - MGP_AJ_P0051149 1700025F22Rik protein_coding protein_coding MGP_AJ_T0051150.1 MGP_AJ_G0024838.1 mouse_genomes_project 19 7970047 7993594 - MGP_AJ_P0051150 1700025F22Rik protein_coding protein_coding MGP_AJ_T0051151.1 MGP_AJ_G0024838.1 mouse_genomes_project 19 7970047 7993594 - MGP_AJ_P0051151 1700025F22Rik protein_coding protein_coding MGP_AJ_T0003873.1 MGP_AJ_G0003462.1 mouse_genomes_project 19 42226320 42233733 - 1700039E22Rik antisense antisense MGP_AJ_T0013386.1 MGP_AJ_G0011481.1 mouse_genomes_project 19 21678858 21679829 - processed_pseudogene processed_pseudogene MGP_AJ_T0011472.1 MGP_AJ_G0009594.1 mouse_genomes_project 19 2686280 2686390 - Gm27505 misc_RNA misc_RNA MGP_AJ_T0003881.1 MGP_AJ_G0003470.1 mouse_genomes_project 19 56853928 56855846 - Gm29261 antisense antisense MGP_AJ_T0051663.1 MGP_AJ_G0025062.1 mouse_genomes_project 19 35273339 35293559 + MGP_AJ_P0051663 Cep55 protein_coding protein_coding MGP_AJ_T0051664.1 MGP_AJ_G0025062.1 mouse_genomes_project 19 35273354 35292632 + MGP_AJ_P0051664 Cep55 protein_coding protein_coding MGP_AJ_T0051665.1 MGP_AJ_G0025062.1 mouse_genomes_project 19 35273356 35293559 + MGP_AJ_P0051665 Cep55 protein_coding protein_coding MGP_AJ_T0013375.1 MGP_AJ_G0011470.1 mouse_genomes_project 19 4510824 4511992 - processed_pseudogene processed_pseudogene MGP_AJ_T0098937.1 MGP_AJ_G0036915.1 mouse_genomes_project 19 53381665 53386571 + Ppnr sense_intronic sense_intronic MGP_AJ_T0098645.1 MGP_AJ_G0036629.1 mouse_genomes_project 19 45704586 45704697 - Gm23857 rRNA rRNA MGP_AJ_T0051250.1 MGP_AJ_G0024887.1 mouse_genomes_project 19 9511823 9517501 + MGP_AJ_P0051250 Olfr1443 protein_coding protein_coding MGP_AJ_T0051365.1 MGP_AJ_G0024956.1 mouse_genomes_project 19 18564622 18636181 - MGP_AJ_P0051365 1110059E24Rik protein_coding protein_coding MGP_AJ_T0051366.1 MGP_AJ_G0024956.1 mouse_genomes_project 19 18581574 18636161 - MGP_AJ_P0051366 1110059E24Rik protein_coding protein_coding MGP_AJ_T0051367.1 MGP_AJ_G0024956.1 mouse_genomes_project 19 18581965 18636253 - MGP_AJ_P0051367 1110059E24Rik protein_coding nonsense_mediated_decay MGP_AJ_T0051368.1 MGP_AJ_G0024956.1 mouse_genomes_project 19 18582434 18614434 - MGP_AJ_P0051368 1110059E24Rik protein_coding nonsense_mediated_decay MGP_AJ_T0051369.1 MGP_AJ_G0024956.1 mouse_genomes_project 19 18582589 18636370 - MGP_AJ_P0051369 1110059E24Rik protein_coding protein_coding MGP_AJ_T0051370.1 MGP_AJ_G0024956.1 mouse_genomes_project 19 18583078 18588124 - 1110059E24Rik protein_coding processed_transcript MGP_AJ_T0051371.1 MGP_AJ_G0024956.1 mouse_genomes_project 19 18583090 18636063 - MGP_AJ_P0051371 1110059E24Rik protein_coding nonsense_mediated_decay MGP_AJ_T0051372.1 MGP_AJ_G0024956.1 mouse_genomes_project 19 18599032 18636246 - 1110059E24Rik protein_coding retained_intron MGP_AJ_T0017669.1 MGP_AJ_G0015350.1 mouse_genomes_project 19 2639649 2640637 + Gm20417 processed_transcript processed_transcript MGP_AJ_T0007071.1 MGP_AJ_G0005804.1 mouse_genomes_project 19 7867109 7870461 - AW112010 lincRNA lincRNA MGP_AJ_T0050551.1 MGP_AJ_G0024675.1 mouse_genomes_project 19 2299884 2303142 - MGP_AJ_P0050551 Ctsw protein_coding protein_coding MGP_AJ_T0051885.1 MGP_AJ_G0025140.1 mouse_genomes_project 19 41446991 41481805 - MGP_AJ_P0051885 Chuk protein_coding protein_coding MGP_AJ_T0051886.1 MGP_AJ_G0025140.1 mouse_genomes_project 19 41446992 41481802 - MGP_AJ_P0051886 Chuk protein_coding protein_coding MGP_AJ_T0051887.1 MGP_AJ_G0025140.1 mouse_genomes_project 19 41448029 41449561 - Chuk protein_coding retained_intron MGP_AJ_T0051888.1 MGP_AJ_G0025140.1 mouse_genomes_project 19 41450594 41452675 - Chuk protein_coding retained_intron MGP_AJ_T0051889.1 MGP_AJ_G0025140.1 mouse_genomes_project 19 41450896 41458787 - Chuk protein_coding retained_intron MGP_AJ_T0051890.1 MGP_AJ_G0025140.1 mouse_genomes_project 19 41451929 41452922 - Chuk protein_coding retained_intron MGP_AJ_T0051891.1 MGP_AJ_G0025140.1 mouse_genomes_project 19 41455058 41481794 - Chuk protein_coding retained_intron MGP_AJ_T0051892.1 MGP_AJ_G0025140.1 mouse_genomes_project 19 41471525 41481607 - Chuk protein_coding retained_intron MGP_AJ_T0007077.1 MGP_AJ_G0005809.1 mouse_genomes_project 19 19999472 20038894 - C330002G04Rik lincRNA lincRNA MGP_AJ_T0052037.1 MGP_AJ_G0025187.1 mouse_genomes_project 19 43951819 43994642 - MGP_AJ_P0052037 Arl3 protein_coding protein_coding MGP_AJ_T0100991.1 MGP_AJ_G0038957.1 mouse_genomes_project 19 16232281 16232413 + Gm25437 snoRNA snoRNA MGP_AJ_T0050405.1 MGP_AJ_G0024619.1 mouse_genomes_project 19 965810 977261 - MGP_AJ_P0050405 Carns1 protein_coding protein_coding MGP_AJ_T0010294.1 MGP_AJ_G0008416.1 mouse_genomes_project 19 8803057 8803130 + Mir6994 miRNA miRNA MGP_AJ_T0052259.1 MGP_AJ_G0025256.1 mouse_genomes_project 19 56348630 56366716 + MGP_AJ_P0052259 Pnliprp2 protein_coding protein_coding MGP_AJ_T0100993.1 MGP_AJ_G0038959.1 mouse_genomes_project 19 19203727 19203825 - Gm22506 snoRNA snoRNA MGP_AJ_T0051459.1 MGP_AJ_G0024989.1 mouse_genomes_project 19 25878838 25923064 + Slc1a1 protein_coding retained_intron MGP_AJ_T0051460.1 MGP_AJ_G0024989.1 mouse_genomes_project 19 25878863 25958351 + MGP_AJ_P0051460 Slc1a1 protein_coding protein_coding MGP_AJ_T0051461.1 MGP_AJ_G0024989.1 mouse_genomes_project 19 25878924 25950379 + Slc1a1 protein_coding retained_intron MGP_AJ_T0051462.1 MGP_AJ_G0024989.1 mouse_genomes_project 19 25936739 25956268 + Slc1a1 protein_coding retained_intron MGP_AJ_T0051464.1 MGP_AJ_G0024989.1 mouse_genomes_project 19 25939508 25957029 + Slc1a1 protein_coding retained_intron MGP_AJ_T0011484.1 MGP_AJ_G0009606.1 mouse_genomes_project 19 39055738 39055977 + Gm22601 misc_RNA misc_RNA MGP_AJ_T0051610.1 MGP_AJ_G0025046.1 mouse_genomes_project 19 33294480 33302399 - MGP_AJ_P0051610 Ankrd1 protein_coding protein_coding MGP_AJ_T0051343.1 MGP_AJ_G0024948.1 mouse_genomes_project 19 15877559 15948486 - MGP_AJ_P0051343 Rorb protein_coding protein_coding MGP_AJ_T0051344.1 MGP_AJ_G0024948.1 mouse_genomes_project 19 15884793 16064842 - MGP_AJ_P0051344 Rorb protein_coding protein_coding MGP_AJ_T0051345.1 MGP_AJ_G0024948.1 mouse_genomes_project 19 15922847 15948469 - Rorb protein_coding retained_intron MGP_AJ_T0051346.1 MGP_AJ_G0024948.1 mouse_genomes_project 19 15922865 15948480 - Rorb protein_coding retained_intron MGP_AJ_T0051895.1 MGP_AJ_G0025143.1 mouse_genomes_project 19 41521513 41565489 - MGP_AJ_P0051895 Pkd2l1 protein_coding protein_coding MGP_AJ_T0051896.1 MGP_AJ_G0025143.1 mouse_genomes_project 19 41521514 41565489 - Pkd2l1 protein_coding retained_intron MGP_AJ_T0051897.1 MGP_AJ_G0025143.1 mouse_genomes_project 19 41522383 41568274 - MGP_AJ_P0051897 Pkd2l1 protein_coding unknown_likely_coding MGP_AJ_T0007059.1 MGP_AJ_G0005798.1 mouse_genomes_project 19 2637777 2644760 - Malat1 lincRNA lincRNA MGP_AJ_T0007060.1 MGP_AJ_G0005798.1 mouse_genomes_project 19 2637778 2639552 - Malat1 lincRNA lincRNA MGP_AJ_T0007061.1 MGP_AJ_G0005798.1 mouse_genomes_project 19 2637781 2639040 - Malat1 lincRNA lincRNA MGP_AJ_T0007062.1 MGP_AJ_G0005798.1 mouse_genomes_project 19 2644003 2644759 - Malat1 lincRNA lincRNA MGP_AJ_T0007063.1 MGP_AJ_G0005798.1 mouse_genomes_project 19 2644030 2644728 - Malat1 lincRNA lincRNA MGP_AJ_T0051687.1 MGP_AJ_G0025071.1 mouse_genomes_project 19 36087754 36171477 + MGP_AJ_P0051687 Tbc1d12 protein_coding protein_coding MGP_AJ_T0052131.1 MGP_AJ_G0025224.1 mouse_genomes_project 19 51105780 51153906 + MGP_AJ_P0052131 Smc3 protein_coding protein_coding MGP_AJ_T0052132.1 MGP_AJ_G0025224.1 mouse_genomes_project 19 51142564 51143593 + Smc3 protein_coding retained_intron MGP_AJ_T0052133.1 MGP_AJ_G0025224.1 mouse_genomes_project 19 51150789 51152768 + Smc3 protein_coding retained_intron MGP_AJ_T0051224.1 MGP_AJ_G0024868.1 mouse_genomes_project 19 8974893 8979725 - MGP_AJ_P0051224 protein_coding protein_coding MGP_AJ_T0051364.1 MGP_AJ_G0024955.1 mouse_genomes_project 19 18539107 18541092 + MGP_AJ_P0051364 Gm3443 protein_coding protein_coding MGP_AJ_T0003875.1 MGP_AJ_G0003464.1 mouse_genomes_project 19 43153760 43156442 + Gm15491 antisense antisense MGP_AJ_T0051115.1 MGP_AJ_G0024828.1 mouse_genomes_project 19 7687523 7698921 - MGP_AJ_P0051115 Tmem109 protein_coding protein_coding MGP_AJ_T0051116.1 MGP_AJ_G0024828.1 mouse_genomes_project 19 7688707 7697217 - MGP_AJ_P0051116 Tmem109 protein_coding protein_coding MGP_AJ_T0051117.1 MGP_AJ_G0024828.1 mouse_genomes_project 19 7688991 7691595 - Tmem109 protein_coding retained_intron MGP_AJ_T0051118.1 MGP_AJ_G0024828.1 mouse_genomes_project 19 7689046 7698921 - MGP_AJ_P0051118 Tmem109 protein_coding protein_coding MGP_AJ_T0051119.1 MGP_AJ_G0024828.1 mouse_genomes_project 19 7690785 7698631 - Tmem109 protein_coding retained_intron MGP_AJ_T0051120.1 MGP_AJ_G0024828.1 mouse_genomes_project 19 7691099 7698651 - MGP_AJ_P0051120 Tmem109 protein_coding protein_coding MGP_AJ_T0051121.1 MGP_AJ_G0024828.1 mouse_genomes_project 19 7691117 7698618 - MGP_AJ_P0051121 Tmem109 protein_coding protein_coding MGP_AJ_T0051122.1 MGP_AJ_G0024828.1 mouse_genomes_project 19 7697348 7698618 - Tmem109 protein_coding processed_transcript MGP_AJ_T0051164.1 MGP_AJ_G0024843.1 mouse_genomes_project 19 8121835 8134985 - MGP_AJ_P0051164 Ms4a14 protein_coding protein_coding MGP_AJ_T0051917.1 MGP_AJ_G0025152.1 mouse_genomes_project 19 41953385 41954490 + Hif1an protein_coding retained_intron MGP_AJ_T0051918.1 MGP_AJ_G0025152.1 mouse_genomes_project 19 41953385 41966804 + MGP_AJ_P0051918 Hif1an protein_coding protein_coding MGP_AJ_T0050587.1 MGP_AJ_G0024684.1 mouse_genomes_project 19 2440311 2447385 - MGP_AJ_P0050587 Kat5 protein_coding protein_coding MGP_AJ_T0007079.1 MGP_AJ_G0005811.1 mouse_genomes_project 19 21041108 21042779 + 1700021P04Rik lincRNA lincRNA MGP_AJ_T0051207.1 MGP_AJ_G0024856.1 mouse_genomes_project 19 8546685 8567957 - MGP_AJ_P0051207 Oosp1 protein_coding protein_coding MGP_AJ_T0051208.1 MGP_AJ_G0024856.1 mouse_genomes_project 19 8546760 8567835 - MGP_AJ_P0051208 Oosp1 protein_coding protein_coding MGP_AJ_T0051209.1 MGP_AJ_G0024856.1 mouse_genomes_project 19 8546898 8567841 - MGP_AJ_P0051209 Oosp1 protein_coding nonsense_mediated_decay MGP_AJ_T0051805.1 MGP_AJ_G0025114.1 mouse_genomes_project 19 39377428 39378808 + MGP_AJ_P0051805 4933411K16Rik protein_coding protein_coding MGP_AJ_T0099721.1 MGP_AJ_G0037687.1 mouse_genomes_project 19 10168470 10168577 - Gm22443 snRNA snRNA MGP_AJ_T0051898.1 MGP_AJ_G0025144.1 mouse_genomes_project 19 41576380 41617836 + MGP_AJ_P0051898 Scd3 protein_coding protein_coding MGP_AJ_T0051779.1 MGP_AJ_G0025109.1 mouse_genomes_project 19 39254555 39265011 + MGP_AJ_P0051779 Zdhhc16 protein_coding protein_coding MGP_AJ_T0051780.1 MGP_AJ_G0025109.1 mouse_genomes_project 19 39254582 39265019 + MGP_AJ_P0051780 Zdhhc16 protein_coding unknown_likely_coding MGP_AJ_T0051633.1 MGP_AJ_G0025051.1 mouse_genomes_project 19 34114375 34116440 - MGP_AJ_P0051633 Fgfbp3 protein_coding protein_coding MGP_AJ_T0051407.1 MGP_AJ_G0024978.1 mouse_genomes_project 19 22232313 22436257 + MGP_AJ_P0051407 Kank1 protein_coding protein_coding MGP_AJ_T0051408.1 MGP_AJ_G0024978.1 mouse_genomes_project 19 22397245 22411760 + Kank1 protein_coding processed_transcript MGP_AJ_T0051409.1 MGP_AJ_G0024978.1 mouse_genomes_project 19 22408686 22427805 + MGP_AJ_P0051409 Kank1 protein_coding protein_coding MGP_AJ_T0051410.1 MGP_AJ_G0024978.1 mouse_genomes_project 19 22424126 22426397 + Kank1 protein_coding retained_intron MGP_AJ_T0098644.1 MGP_AJ_G0036628.1 mouse_genomes_project 19 41304868 41304985 + n-R5s21 rRNA rRNA MGP_AJ_T0052036.1 MGP_AJ_G0025186.1 mouse_genomes_project 19 43921422 43936197 + MGP_AJ_P0052036 Trim8 protein_coding protein_coding MGP_AJ_T0007069.1 MGP_AJ_G0005802.1 mouse_genomes_project 19 7197113 7199713 - Gm26859 lincRNA lincRNA MGP_AJ_T0010320.1 MGP_AJ_G0008442.1 mouse_genomes_project 19 47172984 47173063 - Gm27935 miRNA miRNA MGP_AJ_T0050863.1 MGP_AJ_G0024746.1 mouse_genomes_project 19 3756641 3759741 - MGP_AJ_P0050863 Nudt22 protein_coding protein_coding MGP_AJ_T0050864.1 MGP_AJ_G0024746.1 mouse_genomes_project 19 3756641 3759661 - MGP_AJ_P0050864 Nudt22 protein_coding protein_coding MGP_AJ_T0050865.1 MGP_AJ_G0024746.1 mouse_genomes_project 19 3756642 3758508 - Nudt22 protein_coding retained_intron MGP_AJ_T0052106.1 MGP_AJ_G0025215.1 mouse_genomes_project 19 47500724 47501336 - MGP_AJ_P0052106 Rpl13a-ps1 protein_coding protein_coding MGP_AJ_T0052246.1 MGP_AJ_G0025251.1 mouse_genomes_project 19 55174988 55707575 + MGP_AJ_P0052246 Atrnl1 protein_coding protein_coding MGP_AJ_T0052107.1 MGP_AJ_G0025216.1 mouse_genomes_project 19 47616639 48164439 - MGP_AJ_P0052107 protein_coding protein_coding MGP_AJ_T0052108.1 MGP_AJ_G0025216.1 mouse_genomes_project 19 47620998 48164439 - MGP_AJ_P0052108 protein_coding protein_coding MGP_AJ_T0052109.1 MGP_AJ_G0025216.1 mouse_genomes_project 19 47624336 47732080 - MGP_AJ_P0052109 protein_coding protein_coding MGP_AJ_T0052110.1 MGP_AJ_G0025216.1 mouse_genomes_project 19 47626030 48164278 - MGP_AJ_P0052110 protein_coding protein_coding MGP_AJ_T0051285.1 MGP_AJ_G0024914.1 mouse_genomes_project 19 10346074 10359912 + MGP_AJ_P0051285 Olfr1474 protein_coding protein_coding MGP_AJ_T0050271.1 MGP_AJ_G0024591.1 mouse_genomes_project 19 156945 166411 + MGP_AJ_P0050271 Mtl5 protein_coding protein_coding MGP_AJ_T0050272.1 MGP_AJ_G0024591.1 mouse_genomes_project 19 157010 175353 + MGP_AJ_P0050272 Mtl5 protein_coding protein_coding MGP_AJ_T0051519.1 MGP_AJ_G0025007.1 mouse_genomes_project 19 27076859 27079090 + MGP_AJ_P0051519 Trpd52l3 protein_coding protein_coding MGP_AJ_T0051941.1 MGP_AJ_G0025163.1 mouse_genomes_project 19 42621374 42624504 - MGP_AJ_P0051941 Lbx1 protein_coding protein_coding MGP_AJ_T0050901.1 MGP_AJ_G0024758.1 mouse_genomes_project 19 4192488 4200768 + MGP_AJ_P0050901 2700081O15Rik protein_coding protein_coding MGP_AJ_T0050902.1 MGP_AJ_G0024758.1 mouse_genomes_project 19 4193580 4195952 + 2700081O15Rik protein_coding retained_intron MGP_AJ_T0050903.1 MGP_AJ_G0024758.1 mouse_genomes_project 19 4194953 4198202 + MGP_AJ_P0050903 2700081O15Rik protein_coding protein_coding MGP_AJ_T0050904.1 MGP_AJ_G0024758.1 mouse_genomes_project 19 4195272 4197536 + MGP_AJ_P0050904 2700081O15Rik protein_coding nonsense_mediated_decay MGP_AJ_T0050905.1 MGP_AJ_G0024758.1 mouse_genomes_project 19 4195282 4197188 + MGP_AJ_P0050905 2700081O15Rik protein_coding protein_coding MGP_AJ_T0050906.1 MGP_AJ_G0024758.1 mouse_genomes_project 19 4195891 4200404 + 2700081O15Rik protein_coding retained_intron MGP_AJ_T0010311.1 MGP_AJ_G0008433.1 mouse_genomes_project 19 39604094 39604193 + Gm26339 miRNA miRNA MGP_AJ_T0099729.1 MGP_AJ_G0037695.1 mouse_genomes_project 19 27061793 27061959 + Gm26046 snRNA snRNA MGP_AJ_T0051316.1 MGP_AJ_G0024936.1 mouse_genomes_project 19 13358666 13542348 + MGP_AJ_P0051316 Gna14 protein_coding protein_coding MGP_AJ_T0050532.1 MGP_AJ_G0024665.1 mouse_genomes_project 19 2174158 2179028 - MGP_AJ_P0050532 Cst6 protein_coding protein_coding MGP_AJ_T0052262.1 MGP_AJ_G0025258.1 mouse_genomes_project 19 56385474 56452178 - MGP_AJ_P0052262 Hspa12a protein_coding protein_coding MGP_AJ_T0051338.1 MGP_AJ_G0024945.1 mouse_genomes_project 19 15619901 15654114 + MGP_AJ_P0051338 Carnmt1 protein_coding protein_coding MGP_AJ_T0051228.1 MGP_AJ_G0024872.1 mouse_genomes_project 19 9055757 9056696 - MGP_AJ_P0051228 Olfr262 protein_coding protein_coding MGP_AJ_T0051764.1 MGP_AJ_G0025102.1 mouse_genomes_project 19 38901036 38903831 + MGP_AJ_P0051764 AI606181 protein_coding protein_coding MGP_AJ_T0050505.1 MGP_AJ_G0024651.1 mouse_genomes_project 19 1842764 1850736 + MGP_AJ_P0050505 Slc29a2 protein_coding protein_coding MGP_AJ_T0007126.1 MGP_AJ_G0005843.1 mouse_genomes_project 19 57835740 57837468 + Gm28351 lincRNA lincRNA MGP_AJ_T0051705.1 MGP_AJ_G0025081.1 mouse_genomes_project 19 36986606 37030541 - MGP_AJ_P0051705 protein_coding protein_coding MGP_AJ_T0051385.1 MGP_AJ_G0024962.1 mouse_genomes_project 19 20269946 20420133 - MGP_AJ_P0051385 Mamdc2 protein_coding protein_coding MGP_AJ_T0050356.1 MGP_AJ_G0024609.1 mouse_genomes_project 19 861624 863594 - MGP_AJ_P0050356 BC021614 protein_coding protein_coding MGP_AJ_T0050357.1 MGP_AJ_G0024609.1 mouse_genomes_project 19 861625 863443 - MGP_AJ_P0050357 BC021614 protein_coding protein_coding MGP_AJ_T0052123.1 MGP_AJ_G0025219.1 mouse_genomes_project 19 50624170 50734366 + MGP_AJ_P0052123 Add3 protein_coding protein_coding MGP_AJ_T0052124.1 MGP_AJ_G0025219.1 mouse_genomes_project 19 50626481 50734366 + MGP_AJ_P0052124 Add3 protein_coding protein_coding MGP_AJ_T0052125.1 MGP_AJ_G0025219.1 mouse_genomes_project 19 50627714 50734366 + MGP_AJ_P0052125 Add3 protein_coding protein_coding MGP_AJ_T0050342.1 MGP_AJ_G0024607.1 mouse_genomes_project 19 782360 786045 + Doc2g protein_coding retained_intron MGP_AJ_T0050343.1 MGP_AJ_G0024607.1 mouse_genomes_project 19 782364 784828 + Doc2g protein_coding retained_intron MGP_AJ_T0050344.1 MGP_AJ_G0024607.1 mouse_genomes_project 19 782375 786046 + MGP_AJ_P0050344 Doc2g protein_coding protein_coding MGP_AJ_T0050345.1 MGP_AJ_G0024607.1 mouse_genomes_project 19 782739 785174 + Doc2g protein_coding retained_intron MGP_AJ_T0051391.1 MGP_AJ_G0024968.1 mouse_genomes_project 19 20947950 21009076 - MGP_AJ_P0051391 Fam189a2 protein_coding protein_coding MGP_AJ_T0050844.1 MGP_AJ_G0024739.1 mouse_genomes_project 19 3700365 3703804 - MGP_AJ_P0050844 Gpr137 protein_coding protein_coding MGP_AJ_T0050845.1 MGP_AJ_G0024739.1 mouse_genomes_project 19 3700366 3703490 - MGP_AJ_P0050845 Gpr137 protein_coding protein_coding MGP_AJ_T0050846.1 MGP_AJ_G0024739.1 mouse_genomes_project 19 3700366 3703776 - MGP_AJ_P0050846 Gpr137 protein_coding protein_coding MGP_AJ_T0050847.1 MGP_AJ_G0024739.1 mouse_genomes_project 19 3700366 3704747 - MGP_AJ_P0050847 Gpr137 protein_coding protein_coding MGP_AJ_T0050848.1 MGP_AJ_G0024739.1 mouse_genomes_project 19 3700366 3703490 - MGP_AJ_P0050848 Gpr137 protein_coding protein_coding MGP_AJ_T0003880.1 MGP_AJ_G0003469.1 mouse_genomes_project 19 55778670 55810377 + Gm16277 antisense antisense MGP_AJ_T0051382.1 MGP_AJ_G0024960.1 mouse_genomes_project 19 20106308 20131817 + MGP_AJ_P0051382 Klf9 protein_coding protein_coding MGP_AJ_T0051029.1 MGP_AJ_G0024793.1 mouse_genomes_project 19 5894614 5905279 + MGP_AJ_P0051029 Mta2 protein_coding protein_coding MGP_AJ_T0051030.1 MGP_AJ_G0024793.1 mouse_genomes_project 19 5895232 5898614 + Mta2 protein_coding processed_transcript MGP_AJ_T0051031.1 MGP_AJ_G0024793.1 mouse_genomes_project 19 5895245 5899480 + Mta2 protein_coding processed_transcript MGP_AJ_T0051032.1 MGP_AJ_G0024793.1 mouse_genomes_project 19 5896776 5899877 + Mta2 protein_coding retained_intron MGP_AJ_T0051033.1 MGP_AJ_G0024793.1 mouse_genomes_project 19 5897835 5899501 + Mta2 protein_coding processed_transcript MGP_AJ_T0051034.1 MGP_AJ_G0024793.1 mouse_genomes_project 19 5899152 5900439 + Mta2 protein_coding retained_intron MGP_AJ_T0102451.1 MGP_AJ_G0040193.1 mouse_genomes_project 19 6308580 6317603 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0013381.1 MGP_AJ_G0011476.1 mouse_genomes_project 19 10906394 10907183 - processed_pseudogene processed_pseudogene MGP_AJ_T0099740.1 MGP_AJ_G0037706.1 mouse_genomes_project 19 50643477 50643584 - Gm24724 snRNA snRNA MGP_AJ_T0051302.1 MGP_AJ_G0024931.1 mouse_genomes_project 19 10818917 10820020 + MGP_AJ_P0051302 Olfr1505 protein_coding protein_coding MGP_AJ_T0052057.1 MGP_AJ_G0025196.1 mouse_genomes_project 19 44465891 44483704 - MGP_AJ_P0052057 Pcgf6 protein_coding protein_coding MGP_AJ_T0098428.1 MGP_AJ_G0036412.1 mouse_genomes_project 19 9869732 9870657 + pseudogene pseudogene MGP_AJ_T0013388.1 MGP_AJ_G0011483.1 mouse_genomes_project 19 24893098 24893538 + processed_pseudogene processed_pseudogene MGP_AJ_T0052260.1 MGP_AJ_G0025257.1 mouse_genomes_project 19 56375456 56384185 - MGP_AJ_P0052260 1700019N19Rik protein_coding protein_coding MGP_AJ_T0052261.1 MGP_AJ_G0025257.1 mouse_genomes_project 19 56375649 56383002 - MGP_AJ_P0052261 1700019N19Rik protein_coding protein_coding MGP_AJ_T0052058.1 MGP_AJ_G0025197.1 mouse_genomes_project 19 44502485 44518247 + MGP_AJ_P0052058 Taf5 protein_coding protein_coding MGP_AJ_T0052134.1 MGP_AJ_G0025225.1 mouse_genomes_project 19 51187104 51382673 + MGP_AJ_P0052134 Rbm20 protein_coding protein_coding MGP_AJ_T0052135.1 MGP_AJ_G0025225.1 mouse_genomes_project 19 51187104 51359465 + MGP_AJ_P0052135 Rbm20 protein_coding protein_coding MGP_AJ_T0052136.1 MGP_AJ_G0025225.1 mouse_genomes_project 19 51308799 51329083 + Rbm20 protein_coding processed_transcript MGP_AJ_T0052137.1 MGP_AJ_G0025225.1 mouse_genomes_project 19 51358911 51382673 + MGP_AJ_P0052137 Rbm20 protein_coding nonsense_mediated_decay MGP_AJ_T0003865.1 MGP_AJ_G0003457.1 mouse_genomes_project 19 26091935 26094420 + 1700018L02Rik antisense antisense MGP_AJ_T0051376.1 MGP_AJ_G0024959.1 mouse_genomes_project 19 19103730 19950908 + MGP_AJ_P0051376 Trpm3 protein_coding protein_coding MGP_AJ_T0051377.1 MGP_AJ_G0024959.1 mouse_genomes_project 19 19103730 19950908 + MGP_AJ_P0051377 Trpm3 protein_coding protein_coding MGP_AJ_T0051378.1 MGP_AJ_G0024959.1 mouse_genomes_project 19 19103730 19950908 + MGP_AJ_P0051378 Trpm3 protein_coding protein_coding MGP_AJ_T0051379.1 MGP_AJ_G0024959.1 mouse_genomes_project 19 19416809 19950910 + MGP_AJ_P0051379 Trpm3 protein_coding protein_coding MGP_AJ_T0051380.1 MGP_AJ_G0024959.1 mouse_genomes_project 19 19661629 19735717 + MGP_AJ_P0051380 Trpm3 protein_coding protein_coding MGP_AJ_T0051381.1 MGP_AJ_G0024959.1 mouse_genomes_project 19 19661629 19886259 + MGP_AJ_P0051381 Trpm3 protein_coding protein_coding MGP_AJ_T0050423.1 MGP_AJ_G0024627.1 mouse_genomes_project 19 1089683 1110798 - MGP_AJ_P0050423 Adrbk1 protein_coding protein_coding MGP_AJ_T0050424.1 MGP_AJ_G0024627.1 mouse_genomes_project 19 1089692 1110614 - MGP_AJ_P0050424 Adrbk1 protein_coding nonsense_mediated_decay MGP_AJ_T0050425.1 MGP_AJ_G0024627.1 mouse_genomes_project 19 1089692 1110539 - MGP_AJ_P0050425 Adrbk1 protein_coding protein_coding MGP_AJ_T0050426.1 MGP_AJ_G0024627.1 mouse_genomes_project 19 1089693 1110806 - MGP_AJ_P0050426 Adrbk1 protein_coding protein_coding MGP_AJ_T0050427.1 MGP_AJ_G0024627.1 mouse_genomes_project 19 1091833 1093984 - Adrbk1 protein_coding retained_intron MGP_AJ_T0050428.1 MGP_AJ_G0024627.1 mouse_genomes_project 19 1092976 1093975 - MGP_AJ_P0050428 Adrbk1 protein_coding protein_coding MGP_AJ_T0050429.1 MGP_AJ_G0024627.1 mouse_genomes_project 19 1093006 1095064 - MGP_AJ_P0050429 Adrbk1 protein_coding protein_coding MGP_AJ_T0050430.1 MGP_AJ_G0024627.1 mouse_genomes_project 19 1095042 1096392 - Adrbk1 protein_coding retained_intron MGP_AJ_T0050431.1 MGP_AJ_G0024627.1 mouse_genomes_project 19 1095927 1110611 - Adrbk1 protein_coding retained_intron MGP_AJ_T0050432.1 MGP_AJ_G0024627.1 mouse_genomes_project 19 1097147 1109788 - MGP_AJ_P0050432 Adrbk1 protein_coding protein_coding MGP_AJ_T0051996.1 MGP_AJ_G0025175.1 mouse_genomes_project 19 43488695 43498454 + MGP_AJ_P0051996 Nolc1 protein_coding protein_coding MGP_AJ_T0051997.1 MGP_AJ_G0025175.1 mouse_genomes_project 19 43488862 43498463 + MGP_AJ_P0051997 Nolc1 protein_coding unknown_likely_coding MGP_AJ_T0051089.1 MGP_AJ_G0024816.1 mouse_genomes_project 19 7342768 7364976 - MGP_AJ_P0051089 Tmem216 protein_coding protein_coding MGP_AJ_T0051090.1 MGP_AJ_G0024816.1 mouse_genomes_project 19 7348312 7364991 - MGP_AJ_P0051090 Tmem216 protein_coding protein_coding MGP_AJ_T0051091.1 MGP_AJ_G0024816.1 mouse_genomes_project 19 7359699 7365478 - MGP_AJ_P0051091 Tmem216 protein_coding protein_coding MGP_AJ_T0051092.1 MGP_AJ_G0024816.1 mouse_genomes_project 19 7359730 7364991 - MGP_AJ_P0051092 Tmem216 protein_coding protein_coding MGP_AJ_T0051093.1 MGP_AJ_G0024816.1 mouse_genomes_project 19 7359788 7364991 - MGP_AJ_P0051093 Tmem216 protein_coding protein_coding MGP_AJ_T0051094.1 MGP_AJ_G0024816.1 mouse_genomes_project 19 7363986 7364991 - Tmem216 protein_coding retained_intron MGP_AJ_T0051823.1 MGP_AJ_G0025122.1 mouse_genomes_project 19 39612087 39763855 - MGP_AJ_P0051823 Crtac1 protein_coding protein_coding MGP_AJ_T0051492.1 MGP_AJ_G0025000.1 mouse_genomes_project 19 26463981 26523361 + MGP_AJ_P0051492 Pdcd1lg2 protein_coding protein_coding MGP_AJ_T0052247.1 MGP_AJ_G0025252.1 mouse_genomes_project 19 55809933 56031760 - MGP_AJ_P0052247 Gfra1 protein_coding protein_coding MGP_AJ_T0052248.1 MGP_AJ_G0025252.1 mouse_genomes_project 19 55809941 56030954 - MGP_AJ_P0052248 Gfra1 protein_coding protein_coding MGP_AJ_T0052249.1 MGP_AJ_G0025252.1 mouse_genomes_project 19 55811021 56030828 - MGP_AJ_P0052249 Gfra1 protein_coding protein_coding MGP_AJ_T0052250.1 MGP_AJ_G0025252.1 mouse_genomes_project 19 55812487 56031721 - MGP_AJ_P0052250 Gfra1 protein_coding nonsense_mediated_decay MGP_AJ_T0052251.1 MGP_AJ_G0025252.1 mouse_genomes_project 19 55812487 56031663 - MGP_AJ_P0052251 Gfra1 protein_coding protein_coding MGP_AJ_T0052252.1 MGP_AJ_G0025252.1 mouse_genomes_project 19 56029697 56031368 - MGP_AJ_P0052252 Gfra1 protein_coding protein_coding MGP_AJ_T0052253.1 MGP_AJ_G0025252.1 mouse_genomes_project 19 56029714 56032271 - MGP_AJ_P0052253 Gfra1 protein_coding protein_coding MGP_AJ_T0052254.1 MGP_AJ_G0025252.1 mouse_genomes_project 19 56029783 56030982 - MGP_AJ_P0052254 Gfra1 protein_coding protein_coding MGP_AJ_T0052255.1 MGP_AJ_G0025252.1 mouse_genomes_project 19 56030685 56031523 - MGP_AJ_P0052255 Gfra1 protein_coding protein_coding MGP_AJ_T0051655.1 MGP_AJ_G0025056.1 mouse_genomes_project 19 34592272 34638070 + MGP_AJ_P0051655 Kif11 protein_coding protein_coding MGP_AJ_T0050715.1 MGP_AJ_G0024719.1 mouse_genomes_project 19 3048668 3089406 + MGP_AJ_P0050715 Majin protein_coding protein_coding MGP_AJ_T0050716.1 MGP_AJ_G0024719.1 mouse_genomes_project 19 3048747 3089412 + MGP_AJ_P0050716 Majin protein_coding protein_coding MGP_AJ_T0099732.1 MGP_AJ_G0037698.1 mouse_genomes_project 19 34434263 34434366 - Gm25268 snRNA snRNA MGP_AJ_T0052280.1 MGP_AJ_G0025268.1 mouse_genomes_project 19 58061502 58063068 - MGP_AJ_P0052280 Prlhr protein_coding protein_coding MGP_AJ_T0051963.1 MGP_AJ_G0025169.1 mouse_genomes_project 19 43154392 43187329 - MGP_AJ_P0051963 Mgea5 protein_coding protein_coding MGP_AJ_T0051647.1 MGP_AJ_G0025054.1 mouse_genomes_project 19 34407957 34421999 + MGP_AJ_P0051647 March5 protein_coding protein_coding MGP_AJ_T0051648.1 MGP_AJ_G0025054.1 mouse_genomes_project 19 34407965 34418564 + March5 protein_coding retained_intron MGP_AJ_T0051649.1 MGP_AJ_G0025054.1 mouse_genomes_project 19 34408259 34425383 + MGP_AJ_P0051649 March5 protein_coding protein_coding MGP_AJ_T0003882.1 MGP_AJ_G0003471.1 mouse_genomes_project 19 57019795 57054873 - Emx2os antisense antisense MGP_AJ_T0051599.1 MGP_AJ_G0025041.1 mouse_genomes_project 19 31812583 31891578 - MGP_AJ_P0051599 Slc16a12 protein_coding protein_coding MGP_AJ_T0051871.1 MGP_AJ_G0025136.1 mouse_genomes_project 19 41218481 41293537 - MGP_AJ_P0051871 Dnmbp protein_coding unknown_likely_coding MGP_AJ_T0051872.1 MGP_AJ_G0025136.1 mouse_genomes_project 19 41219635 41283821 - MGP_AJ_P0051872 Dnmbp protein_coding protein_coding MGP_AJ_T0050519.1 MGP_AJ_G0024660.1 mouse_genomes_project 19 1935199 1945987 - MGP_AJ_P0050519 Klc2 protein_coding protein_coding MGP_AJ_T0050520.1 MGP_AJ_G0024660.1 mouse_genomes_project 19 1935199 1945727 - MGP_AJ_P0050520 Klc2 protein_coding protein_coding MGP_AJ_T0050521.1 MGP_AJ_G0024660.1 mouse_genomes_project 19 1935199 1945724 - MGP_AJ_P0050521 Klc2 protein_coding protein_coding MGP_AJ_T0050522.1 MGP_AJ_G0024660.1 mouse_genomes_project 19 1935201 1945725 - MGP_AJ_P0050522 Klc2 protein_coding protein_coding MGP_AJ_T0050523.1 MGP_AJ_G0024660.1 mouse_genomes_project 19 1935622 1936950 - Klc2 protein_coding retained_intron MGP_AJ_T0050524.1 MGP_AJ_G0024660.1 mouse_genomes_project 19 1936896 1938918 - Klc2 protein_coding retained_intron MGP_AJ_T0050525.1 MGP_AJ_G0024660.1 mouse_genomes_project 19 1937839 1939457 - Klc2 protein_coding retained_intron MGP_AJ_T0050526.1 MGP_AJ_G0024660.1 mouse_genomes_project 19 1940982 1941483 - Klc2 protein_coding retained_intron MGP_AJ_T0050527.1 MGP_AJ_G0024660.1 mouse_genomes_project 19 1941282 1945013 - MGP_AJ_P0050527 Klc2 protein_coding protein_coding MGP_AJ_T0050282.1 MGP_AJ_G0024596.1 mouse_genomes_project 19 540879 582224 + MGP_AJ_P0050282 Suv420h1 protein_coding protein_coding MGP_AJ_T0050283.1 MGP_AJ_G0024596.1 mouse_genomes_project 19 540879 592216 + MGP_AJ_P0050283 Suv420h1 protein_coding protein_coding MGP_AJ_T0050284.1 MGP_AJ_G0024596.1 mouse_genomes_project 19 540879 590307 + MGP_AJ_P0050284 Suv420h1 protein_coding protein_coding MGP_AJ_T0050285.1 MGP_AJ_G0024596.1 mouse_genomes_project 19 540879 592217 + MGP_AJ_P0050285 Suv420h1 protein_coding protein_coding MGP_AJ_T0050286.1 MGP_AJ_G0024596.1 mouse_genomes_project 19 540879 590307 + MGP_AJ_P0050286 Suv420h1 protein_coding protein_coding MGP_AJ_T0050287.1 MGP_AJ_G0024596.1 mouse_genomes_project 19 540981 579719 + MGP_AJ_P0050287 Suv420h1 protein_coding protein_coding MGP_AJ_T0050288.1 MGP_AJ_G0024596.1 mouse_genomes_project 19 541491 582230 + MGP_AJ_P0050288 Suv420h1 protein_coding protein_coding MGP_AJ_T0050289.1 MGP_AJ_G0024596.1 mouse_genomes_project 19 541576 578452 + MGP_AJ_P0050289 Suv420h1 protein_coding protein_coding MGP_AJ_T0050290.1 MGP_AJ_G0024596.1 mouse_genomes_project 19 541592 556126 + Suv420h1 protein_coding retained_intron MGP_AJ_T0050291.1 MGP_AJ_G0024596.1 mouse_genomes_project 19 541607 577897 + MGP_AJ_P0050291 Suv420h1 protein_coding protein_coding MGP_AJ_T0050292.1 MGP_AJ_G0024596.1 mouse_genomes_project 19 541624 590604 + MGP_AJ_P0050292 Suv420h1 protein_coding protein_coding MGP_AJ_T0050293.1 MGP_AJ_G0024596.1 mouse_genomes_project 19 541627 566613 + MGP_AJ_P0050293 Suv420h1 protein_coding protein_coding MGP_AJ_T0050294.1 MGP_AJ_G0024596.1 mouse_genomes_project 19 541676 582202 + MGP_AJ_P0050294 Suv420h1 protein_coding protein_coding MGP_AJ_T0050295.1 MGP_AJ_G0024596.1 mouse_genomes_project 19 541691 566631 + MGP_AJ_P0050295 Suv420h1 protein_coding protein_coding MGP_AJ_T0050296.1 MGP_AJ_G0024596.1 mouse_genomes_project 19 542005 570102 + MGP_AJ_P0050296 Suv420h1 protein_coding protein_coding MGP_AJ_T0050297.1 MGP_AJ_G0024596.1 mouse_genomes_project 19 565165 572981 + Suv420h1 protein_coding retained_intron MGP_AJ_T0050298.1 MGP_AJ_G0024596.1 mouse_genomes_project 19 577788 580797 + Suv420h1 protein_coding retained_intron MGP_AJ_T0051975.1 MGP_AJ_G0025172.1 mouse_genomes_project 19 43415179 43417875 + MGP_AJ_P0051975 Hps6 protein_coding protein_coding MGP_AJ_T0051086.1 MGP_AJ_G0024813.1 mouse_genomes_project 19 7282743 7291386 - MGP_AJ_P0051086 Ppp1r32 protein_coding protein_coding MGP_AJ_T0100977.1 MGP_AJ_G0038943.1 mouse_genomes_project 19 879483 879699 - Gm23927 snoRNA snoRNA MGP_AJ_T0052104.1 MGP_AJ_G0025213.1 mouse_genomes_project 19 45400520 45502234 + MGP_AJ_P0052104 Cfap58 protein_coding protein_coding MGP_AJ_T0051543.1 MGP_AJ_G0025016.1 mouse_genomes_project 19 29207362 29474318 - MGP_AJ_P0051543 Sgms1 protein_coding protein_coding MGP_AJ_T0051544.1 MGP_AJ_G0025016.1 mouse_genomes_project 19 29207365 29430180 - MGP_AJ_P0051544 Sgms1 protein_coding protein_coding MGP_AJ_T0051545.1 MGP_AJ_G0025016.1 mouse_genomes_project 19 29208112 29290791 - MGP_AJ_P0051545 Sgms1 protein_coding protein_coding MGP_AJ_T0051546.1 MGP_AJ_G0025016.1 mouse_genomes_project 19 29208778 29356603 - MGP_AJ_P0051546 Sgms1 protein_coding nonsense_mediated_decay MGP_AJ_T0051547.1 MGP_AJ_G0025016.1 mouse_genomes_project 19 29208780 29244889 - MGP_AJ_P0051547 Sgms1 protein_coding nonsense_mediated_decay MGP_AJ_T0051548.1 MGP_AJ_G0025016.1 mouse_genomes_project 19 29242921 29475515 - Sgms1 protein_coding retained_intron MGP_AJ_T0051549.1 MGP_AJ_G0025016.1 mouse_genomes_project 19 29244726 29282631 - MGP_AJ_P0051549 Sgms1 protein_coding protein_coding MGP_AJ_T0051550.1 MGP_AJ_G0025016.1 mouse_genomes_project 19 29244823 29317610 - Sgms1 protein_coding processed_transcript MGP_AJ_T0051551.1 MGP_AJ_G0025016.1 mouse_genomes_project 19 29244835 29403490 - Sgms1 protein_coding processed_transcript MGP_AJ_T0051552.1 MGP_AJ_G0025016.1 mouse_genomes_project 19 29244964 29356577 - Sgms1 protein_coding processed_transcript MGP_AJ_T0051553.1 MGP_AJ_G0025016.1 mouse_genomes_project 19 29298786 29326909 - Sgms1 protein_coding processed_transcript MGP_AJ_T0051554.1 MGP_AJ_G0025016.1 mouse_genomes_project 19 29300615 29369238 - Sgms1 protein_coding retained_intron MGP_AJ_T0051555.1 MGP_AJ_G0025016.1 mouse_genomes_project 19 29303346 29317624 - Sgms1 protein_coding retained_intron MGP_AJ_T0051556.1 MGP_AJ_G0025016.1 mouse_genomes_project 19 29368937 29474269 - Sgms1 protein_coding retained_intron MGP_AJ_T0010310.1 MGP_AJ_G0008432.1 mouse_genomes_project 19 38896321 38896460 + Mir8091 miRNA miRNA MGP_AJ_T0051974.1 MGP_AJ_G0025171.1 mouse_genomes_project 19 43221485 43410200 - MGP_AJ_P0051974 9130011E15Rik protein_coding protein_coding MGP_AJ_T0051571.1 MGP_AJ_G0025026.1 mouse_genomes_project 19 30974609 30976801 + MGP_AJ_P0051571 protein_coding protein_coding MGP_AJ_T0050577.1 MGP_AJ_G0024678.1 mouse_genomes_project 19 2325184 2328729 + MGP_AJ_P0050577 Cfl1 protein_coding protein_coding MGP_AJ_T0007096.1 MGP_AJ_G0005822.1 mouse_genomes_project 19 35269866 35272848 - I830134H01Rik lincRNA lincRNA MGP_AJ_T0007097.1 MGP_AJ_G0005822.1 mouse_genomes_project 19 35269976 35272848 - I830134H01Rik lincRNA lincRNA MGP_AJ_T0050619.1 MGP_AJ_G0024694.1 mouse_genomes_project 19 2598546 2611527 - MGP_AJ_P0050619 Scyl1 protein_coding protein_coding MGP_AJ_T0051305.1 MGP_AJ_G0024933.1 mouse_genomes_project 19 12810392 12832487 - MGP_AJ_P0051305 Psat1 protein_coding protein_coding MGP_AJ_T0051306.1 MGP_AJ_G0024933.1 mouse_genomes_project 19 12810841 12832050 - MGP_AJ_P0051306 Psat1 protein_coding protein_coding MGP_AJ_T0051307.1 MGP_AJ_G0024933.1 mouse_genomes_project 19 12810844 12816463 - Psat1 protein_coding retained_intron MGP_AJ_T0051308.1 MGP_AJ_G0024933.1 mouse_genomes_project 19 12821759 12856961 - MGP_AJ_P0051308 Psat1 protein_coding protein_coding MGP_AJ_T0051309.1 MGP_AJ_G0024933.1 mouse_genomes_project 19 12824262 12825761 - Psat1 protein_coding processed_transcript MGP_AJ_T0051310.1 MGP_AJ_G0024933.1 mouse_genomes_project 19 12825826 12828837 - Psat1 protein_coding retained_intron MGP_AJ_T0051311.1 MGP_AJ_G0024933.1 mouse_genomes_project 19 12827927 12832358 - Psat1 protein_coding retained_intron MGP_AJ_T0051589.1 MGP_AJ_G0025035.1 mouse_genomes_project 19 31604941 31606291 - MGP_AJ_P0051589 Ch25h protein_coding protein_coding MGP_AJ_T0017716.1 MGP_AJ_G0015363.1 mouse_genomes_project 19 40108142 40110567 + Gm16244 processed_transcript processed_transcript MGP_AJ_T0017717.1 MGP_AJ_G0015363.1 mouse_genomes_project 19 40108220 40109374 + Gm16244 processed_transcript processed_transcript MGP_AJ_T0050628.1 MGP_AJ_G0024697.1 mouse_genomes_project 19 2734747 2737716 - MGP_AJ_P0050628 Tigd3 protein_coding protein_coding MGP_AJ_T0051026.1 MGP_AJ_G0024790.1 mouse_genomes_project 19 5873210 5880069 + MGP_AJ_P0051026 B3gat3 protein_coding protein_coding MGP_AJ_T0010288.1 MGP_AJ_G0008410.1 mouse_genomes_project 19 3674770 3674861 - Mir6990 miRNA miRNA MGP_AJ_T0051964.1 MGP_AJ_G0025170.1 mouse_genomes_project 19 43195494 43197955 - MGP_AJ_P0051964 Kcnip2 protein_coding protein_coding MGP_AJ_T0051965.1 MGP_AJ_G0025170.1 mouse_genomes_project 19 43196001 43219364 - Kcnip2 protein_coding retained_intron MGP_AJ_T0051966.1 MGP_AJ_G0025170.1 mouse_genomes_project 19 43196001 43219403 - MGP_AJ_P0051966 Kcnip2 protein_coding protein_coding MGP_AJ_T0051967.1 MGP_AJ_G0025170.1 mouse_genomes_project 19 43196001 43219364 - MGP_AJ_P0051967 Kcnip2 protein_coding protein_coding MGP_AJ_T0051968.1 MGP_AJ_G0025170.1 mouse_genomes_project 19 43197004 43215634 - MGP_AJ_P0051968 Kcnip2 protein_coding protein_coding MGP_AJ_T0051969.1 MGP_AJ_G0025170.1 mouse_genomes_project 19 43197103 43219367 - MGP_AJ_P0051969 Kcnip2 protein_coding protein_coding MGP_AJ_T0051970.1 MGP_AJ_G0025170.1 mouse_genomes_project 19 43197325 43199360 - MGP_AJ_P0051970 Kcnip2 protein_coding protein_coding MGP_AJ_T0051971.1 MGP_AJ_G0025170.1 mouse_genomes_project 19 43197325 43219175 - MGP_AJ_P0051971 Kcnip2 protein_coding protein_coding MGP_AJ_T0051972.1 MGP_AJ_G0025170.1 mouse_genomes_project 19 43197646 43219145 - MGP_AJ_P0051972 Kcnip2 protein_coding protein_coding MGP_AJ_T0051973.1 MGP_AJ_G0025170.1 mouse_genomes_project 19 43198637 43200699 - MGP_AJ_P0051973 Kcnip2 protein_coding protein_coding MGP_AJ_T0051405.1 MGP_AJ_G0024976.1 mouse_genomes_project 19 21893682 21936698 - MGP_AJ_P0051405 Cbwd1 protein_coding protein_coding MGP_AJ_T0003872.1 MGP_AJ_G0003461.1 mouse_genomes_project 19 42169487 42180239 - Gm20395 antisense antisense MGP_AJ_T0099722.1 MGP_AJ_G0037688.1 mouse_genomes_project 19 11626604 11626727 - Gm26026 snRNA snRNA MGP_AJ_T0051781.1 MGP_AJ_G0025110.1 mouse_genomes_project 19 39261979 39302735 - MGP_AJ_P0051781 Mms19 protein_coding protein_coding MGP_AJ_T0051782.1 MGP_AJ_G0025110.1 mouse_genomes_project 19 39261979 39302692 - MGP_AJ_P0051782 Mms19 protein_coding nonsense_mediated_decay MGP_AJ_T0051783.1 MGP_AJ_G0025110.1 mouse_genomes_project 19 39265120 39285636 - Mms19 protein_coding retained_intron MGP_AJ_T0051784.1 MGP_AJ_G0025110.1 mouse_genomes_project 19 39265124 39291304 - MGP_AJ_P0051784 Mms19 protein_coding protein_coding MGP_AJ_T0051785.1 MGP_AJ_G0025110.1 mouse_genomes_project 19 39265126 39302714 - MGP_AJ_P0051785 Mms19 protein_coding nonsense_mediated_decay MGP_AJ_T0051786.1 MGP_AJ_G0025110.1 mouse_genomes_project 19 39265126 39302695 - MGP_AJ_P0051786 Mms19 protein_coding nonsense_mediated_decay MGP_AJ_T0051787.1 MGP_AJ_G0025110.1 mouse_genomes_project 19 39265292 39302710 - MGP_AJ_P0051787 Mms19 protein_coding protein_coding MGP_AJ_T0051788.1 MGP_AJ_G0025110.1 mouse_genomes_project 19 39265404 39276125 - MGP_AJ_P0051788 Mms19 protein_coding nonsense_mediated_decay MGP_AJ_T0051789.1 MGP_AJ_G0025110.1 mouse_genomes_project 19 39265464 39266543 - Mms19 protein_coding retained_intron MGP_AJ_T0051790.1 MGP_AJ_G0025110.1 mouse_genomes_project 19 39267731 39302717 - Mms19 protein_coding retained_intron MGP_AJ_T0051791.1 MGP_AJ_G0025110.1 mouse_genomes_project 19 39267919 39274932 - MGP_AJ_P0051791 Mms19 protein_coding protein_coding MGP_AJ_T0051792.1 MGP_AJ_G0025110.1 mouse_genomes_project 19 39268104 39269172 - Mms19 protein_coding retained_intron MGP_AJ_T0051793.1 MGP_AJ_G0025110.1 mouse_genomes_project 19 39268614 39302715 - MGP_AJ_P0051793 Mms19 protein_coding nonsense_mediated_decay MGP_AJ_T0051794.1 MGP_AJ_G0025110.1 mouse_genomes_project 19 39270712 39272330 - Mms19 protein_coding retained_intron MGP_AJ_T0051795.1 MGP_AJ_G0025110.1 mouse_genomes_project 19 39274084 39302708 - MGP_AJ_P0051795 Mms19 protein_coding nonsense_mediated_decay MGP_AJ_T0051796.1 MGP_AJ_G0025110.1 mouse_genomes_project 19 39275443 39276154 - Mms19 protein_coding retained_intron MGP_AJ_T0051797.1 MGP_AJ_G0025110.1 mouse_genomes_project 19 39283781 39284109 - Mms19 protein_coding retained_intron MGP_AJ_T0051798.1 MGP_AJ_G0025110.1 mouse_genomes_project 19 39283989 39291323 - MGP_AJ_P0051798 Mms19 protein_coding protein_coding MGP_AJ_T0050533.1 MGP_AJ_G0024666.1 mouse_genomes_project 19 2197840 2199861 - MGP_AJ_P0050533 Banf1 protein_coding protein_coding MGP_AJ_T0050534.1 MGP_AJ_G0024666.1 mouse_genomes_project 19 2197840 2199563 - MGP_AJ_P0050534 Banf1 protein_coding protein_coding MGP_AJ_T0050488.1 MGP_AJ_G0024645.1 mouse_genomes_project 19 1697874 1704578 + Zdhhc24 protein_coding processed_transcript MGP_AJ_T0050489.1 MGP_AJ_G0024645.1 mouse_genomes_project 19 1697878 1704578 + MGP_AJ_P0050489 Zdhhc24 protein_coding protein_coding MGP_AJ_T0050490.1 MGP_AJ_G0024645.1 mouse_genomes_project 19 1697896 1704576 + Zdhhc24 protein_coding processed_transcript MGP_AJ_T0050491.1 MGP_AJ_G0024645.1 mouse_genomes_project 19 1697910 1704577 + MGP_AJ_P0050491 Zdhhc24 protein_coding nonsense_mediated_decay MGP_AJ_T0050492.1 MGP_AJ_G0024645.1 mouse_genomes_project 19 1697929 1702962 + MGP_AJ_P0050492 Zdhhc24 protein_coding nonsense_mediated_decay MGP_AJ_T0050493.1 MGP_AJ_G0024645.1 mouse_genomes_project 19 1698974 1702945 + Zdhhc24 protein_coding processed_transcript MGP_AJ_T0051387.1 MGP_AJ_G0024964.1 mouse_genomes_project 19 20652900 20653700 + MGP_AJ_P0051387 Gm6563 protein_coding protein_coding MGP_AJ_T0010295.1 MGP_AJ_G0008417.1 mouse_genomes_project 19 10516511 10516620 - Gm22323 miRNA miRNA MGP_AJ_T0007095.1 MGP_AJ_G0005821.1 mouse_genomes_project 19 34373666 34396273 + A330032B11Rik lincRNA lincRNA MGP_AJ_T0101003.1 MGP_AJ_G0038969.1 mouse_genomes_project 19 43777670 43777779 + Gm24610 snoRNA snoRNA MGP_AJ_T0050998.1 MGP_AJ_G0024782.1 mouse_genomes_project 19 5790001 5801121 + MGP_AJ_P0050998 Bscl2 protein_coding protein_coding MGP_AJ_T0050999.1 MGP_AJ_G0024782.1 mouse_genomes_project 19 5790221 5792776 + Bscl2 protein_coding processed_transcript MGP_AJ_T0051000.1 MGP_AJ_G0024782.1 mouse_genomes_project 19 5790263 5801105 + MGP_AJ_P0051000 Bscl2 protein_coding protein_coding MGP_AJ_T0051001.1 MGP_AJ_G0024782.1 mouse_genomes_project 19 5791860 5801104 + MGP_AJ_P0051001 Bscl2 protein_coding protein_coding MGP_AJ_T0051002.1 MGP_AJ_G0024782.1 mouse_genomes_project 19 5791905 5801105 + Bscl2 protein_coding retained_intron MGP_AJ_T0051003.1 MGP_AJ_G0024782.1 mouse_genomes_project 19 5791922 5801076 + MGP_AJ_P0051003 Bscl2 protein_coding nonsense_mediated_decay MGP_AJ_T0051004.1 MGP_AJ_G0024782.1 mouse_genomes_project 19 5793051 5801104 + MGP_AJ_P0051004 Bscl2 protein_coding protein_coding MGP_AJ_T0051005.1 MGP_AJ_G0024782.1 mouse_genomes_project 19 5793067 5801104 + Bscl2 protein_coding retained_intron MGP_AJ_T0051006.1 MGP_AJ_G0024782.1 mouse_genomes_project 19 5793067 5801104 + Bscl2 protein_coding retained_intron MGP_AJ_T0051007.1 MGP_AJ_G0024782.1 mouse_genomes_project 19 5798722 5801061 + MGP_AJ_P0051007 Bscl2 protein_coding nonsense_mediated_decay MGP_AJ_T0007078.1 MGP_AJ_G0005810.1 mouse_genomes_project 19 20099996 20100815 + 2410080I02Rik lincRNA lincRNA MGP_AJ_T0007070.1 MGP_AJ_G0005803.1 mouse_genomes_project 19 7855765 7857631 - Gm28347 lincRNA lincRNA MGP_AJ_T0051946.1 MGP_AJ_G0025166.1 mouse_genomes_project 19 42961911 42980154 + MGP_AJ_P0051946 Gm17018 protein_coding protein_coding MGP_AJ_T0051948.1 MGP_AJ_G0025166.1 mouse_genomes_project 19 42980151 42981638 + Gm17018 protein_coding antisense MGP_AJ_T0051821.1 MGP_AJ_G0025121.1 mouse_genomes_project 19 39576568 39599502 + MGP_AJ_P0051821 Golga7b protein_coding protein_coding MGP_AJ_T0051822.1 MGP_AJ_G0025121.1 mouse_genomes_project 19 39584627 39599502 + MGP_AJ_P0051822 Golga7b protein_coding protein_coding MGP_AJ_T0050652.1 MGP_AJ_G0024705.1 mouse_genomes_project 19 2914627 2916478 + MGP_AJ_P0050652 protein_coding protein_coding MGP_AJ_T0050653.1 MGP_AJ_G0024705.1 mouse_genomes_project 19 2914627 2916478 + MGP_AJ_P0050653 protein_coding protein_coding MGP_AJ_T0050655.1 MGP_AJ_G0024705.1 mouse_genomes_project 19 2914887 2916480 + MGP_AJ_P0050655 protein_coding protein_coding MGP_AJ_T0050945.1 MGP_AJ_G0024773.1 mouse_genomes_project 19 5692695 5693203 + MGP_AJ_P0050945 1700092M07Rik protein_coding protein_coding MGP_AJ_T0050946.1 MGP_AJ_G0024773.1 mouse_genomes_project 19 5692739 5693202 + 1700092M07Rik protein_coding retained_intron MGP_AJ_T0010289.1 MGP_AJ_G0008411.1 mouse_genomes_project 19 4197436 4197506 + Mir6991 miRNA miRNA MGP_AJ_T0052153.1 MGP_AJ_G0025234.1 mouse_genomes_project 19 52838618 52856332 - MGP_AJ_P0052153 Zdhhc6 protein_coding protein_coding MGP_AJ_T0052154.1 MGP_AJ_G0025234.1 mouse_genomes_project 19 52839102 52856308 - MGP_AJ_P0052154 Zdhhc6 protein_coding unknown_likely_coding MGP_AJ_T0051097.1 MGP_AJ_G0024819.1 mouse_genomes_project 19 7403137 7415195 - MGP_AJ_P0051097 Tkfc protein_coding protein_coding MGP_AJ_T0051389.1 MGP_AJ_G0024966.1 mouse_genomes_project 19 20701169 20702903 + MGP_AJ_P0051389 Gm9938 protein_coding protein_coding MGP_AJ_T0052191.1 MGP_AJ_G0025239.1 mouse_genomes_project 19 53939097 53983490 + MGP_AJ_P0052191 Casp7 protein_coding protein_coding MGP_AJ_T0098830.1 MGP_AJ_G0036814.1 mouse_genomes_project 19 8572099 8572175 + Gm25443 scaRNA scaRNA MGP_AJ_T0098432.1 MGP_AJ_G0036416.1 mouse_genomes_project 19 39144616 39145258 + pseudogene pseudogene MGP_AJ_T0051333.1 MGP_AJ_G0024944.1 mouse_genomes_project 19 15580703 15585152 + Nmrk1 protein_coding retained_intron MGP_AJ_T0051334.1 MGP_AJ_G0024944.1 mouse_genomes_project 19 15580703 15600948 + MGP_AJ_P0051334 Nmrk1 protein_coding protein_coding MGP_AJ_T0051335.1 MGP_AJ_G0024944.1 mouse_genomes_project 19 15580703 15600677 + MGP_AJ_P0051335 Nmrk1 protein_coding protein_coding MGP_AJ_T0051336.1 MGP_AJ_G0024944.1 mouse_genomes_project 19 15580712 15589959 + MGP_AJ_P0051336 Nmrk1 protein_coding nonsense_mediated_decay MGP_AJ_T0051337.1 MGP_AJ_G0024944.1 mouse_genomes_project 19 15580715 15586059 + Nmrk1 protein_coding retained_intron MGP_AJ_T0051140.1 MGP_AJ_G0024834.1 mouse_genomes_project 19 7796070 7811023 - MGP_AJ_P0051140 Ms4a15 protein_coding protein_coding MGP_AJ_T0051141.1 MGP_AJ_G0024834.1 mouse_genomes_project 19 7800913 7810954 - MGP_AJ_P0051141 Ms4a15 protein_coding protein_coding MGP_AJ_T0051142.1 MGP_AJ_G0024834.1 mouse_genomes_project 19 7800999 7811003 - MGP_AJ_P0051142 Ms4a15 protein_coding protein_coding MGP_AJ_T0001015.1 MGP_AJ_G0000946.1 mouse_genomes_project 19 8461184 8462716 - TEC TEC MGP_AJ_T0051563.1 MGP_AJ_G0025021.1 mouse_genomes_project 19 30239882 30495645 - MGP_AJ_P0051563 Rnls protein_coding protein_coding MGP_AJ_T0051564.1 MGP_AJ_G0025021.1 mouse_genomes_project 19 30239882 30495675 - MGP_AJ_P0051564 Rnls protein_coding protein_coding MGP_AJ_T0052024.1 MGP_AJ_G0025182.1 mouse_genomes_project 19 43746559 43755412 - MGP_AJ_P0052024 Cuedc2 protein_coding protein_coding MGP_AJ_T0052025.1 MGP_AJ_G0025182.1 mouse_genomes_project 19 43746559 43755412 - MGP_AJ_P0052025 Cuedc2 protein_coding protein_coding MGP_AJ_T0050281.1 MGP_AJ_G0024595.1 mouse_genomes_project 19 481205 491965 + MGP_AJ_P0050281 1810055G02Rik protein_coding protein_coding MGP_AJ_T0013370.1 MGP_AJ_G0011465.1 mouse_genomes_project 19 4381 5908 + processed_pseudogene processed_pseudogene MGP_AJ_T0010285.1 MGP_AJ_G0008407.1 mouse_genomes_project 19 3211784 3211849 + Mir6989 miRNA miRNA MGP_AJ_T0052285.1 MGP_AJ_G0025270.1 mouse_genomes_project 19 58359021 58363012 + MGP_AJ_P0052285 Nanos1 protein_coding protein_coding MGP_AJ_T0050900.1 MGP_AJ_G0024757.1 mouse_genomes_project 19 4130412 4157313 - MGP_AJ_P0050900 AI846148 protein_coding protein_coding MGP_AJ_T0051301.1 MGP_AJ_G0024930.1 mouse_genomes_project 19 10791920 10793005 - MGP_AJ_P0051301 Olfr1504 protein_coding protein_coding MGP_AJ_T0013400.1 MGP_AJ_G0011495.1 mouse_genomes_project 19 54302387 54302735 - processed_pseudogene processed_pseudogene MGP_AJ_T0050408.1 MGP_AJ_G0024622.1 mouse_genomes_project 19 996985 1003391 - MGP_AJ_P0050408 Rad9a protein_coding protein_coding MGP_AJ_T0003851.1 MGP_AJ_G0003447.1 mouse_genomes_project 19 3220718 3228726 - Gm14966 antisense antisense MGP_AJ_T0003852.1 MGP_AJ_G0003447.1 mouse_genomes_project 19 3220794 3228950 - Gm14966 antisense antisense MGP_AJ_T0051103.1 MGP_AJ_G0024824.1 mouse_genomes_project 19 7533829 7555099 - MGP_AJ_P0051103 Cd5 protein_coding protein_coding MGP_AJ_T0013395.1 MGP_AJ_G0011490.1 mouse_genomes_project 19 40628629 40629529 + processed_pseudogene processed_pseudogene MGP_AJ_T0011470.1 MGP_AJ_G0009592.1 mouse_genomes_project 19 2641087 2641173 - Gm27694 misc_RNA misc_RNA MGP_AJ_T0098642.1 MGP_AJ_G0036626.1 mouse_genomes_project 19 34379000 34379106 + Gm23918 rRNA rRNA MGP_AJ_T0052178.1 MGP_AJ_G0025237.1 mouse_genomes_project 19 53827323 53861862 + MGP_AJ_P0052178 Habp2 protein_coding protein_coding MGP_AJ_T0052179.1 MGP_AJ_G0025237.1 mouse_genomes_project 19 53828108 53862595 + MGP_AJ_P0052179 Habp2 protein_coding protein_coding MGP_AJ_T0052180.1 MGP_AJ_G0025237.1 mouse_genomes_project 19 53828122 53852657 + Habp2 protein_coding processed_transcript MGP_AJ_T0052181.1 MGP_AJ_G0025237.1 mouse_genomes_project 19 53828182 53858068 + MGP_AJ_P0052181 Habp2 protein_coding nonsense_mediated_decay MGP_AJ_T0052182.1 MGP_AJ_G0025237.1 mouse_genomes_project 19 53828182 53861408 + MGP_AJ_P0052182 Habp2 protein_coding protein_coding MGP_AJ_T0052183.1 MGP_AJ_G0025237.1 mouse_genomes_project 19 53852482 53858190 + MGP_AJ_P0052183 Habp2 protein_coding protein_coding MGP_AJ_T0052184.1 MGP_AJ_G0025237.1 mouse_genomes_project 19 53853616 53861402 + MGP_AJ_P0052184 Habp2 protein_coding nonsense_mediated_decay MGP_AJ_T0051212.1 MGP_AJ_G0024858.1 mouse_genomes_project 19 8623303 8640721 + MGP_AJ_P0051212 Gif protein_coding protein_coding MGP_AJ_T0051947.1 MGP_AJ_G0025167.1 mouse_genomes_project 19 42980123 43071233 - MGP_AJ_P0051947 Fbxw4 protein_coding protein_coding MGP_AJ_T0051949.1 MGP_AJ_G0025167.1 mouse_genomes_project 19 42980488 43000524 - MGP_AJ_P0051949 Fbxw4 protein_coding protein_coding MGP_AJ_T0051950.1 MGP_AJ_G0025167.1 mouse_genomes_project 19 42980669 42998899 - MGP_AJ_P0051950 Fbxw4 protein_coding protein_coding MGP_AJ_T0051951.1 MGP_AJ_G0025167.1 mouse_genomes_project 19 42980671 42981765 - Fbxw4 protein_coding retained_intron MGP_AJ_T0051952.1 MGP_AJ_G0025167.1 mouse_genomes_project 19 42980715 42998899 - MGP_AJ_P0051952 Fbxw4 protein_coding protein_coding MGP_AJ_T0051953.1 MGP_AJ_G0025167.1 mouse_genomes_project 19 42980786 42999718 - MGP_AJ_P0051953 Fbxw4 protein_coding protein_coding MGP_AJ_T0051954.1 MGP_AJ_G0025167.1 mouse_genomes_project 19 42981636 43039214 - Fbxw4 protein_coding retained_intron MGP_AJ_T0051955.1 MGP_AJ_G0025167.1 mouse_genomes_project 19 42998517 43039214 - Fbxw4 protein_coding retained_intron MGP_AJ_T0051956.1 MGP_AJ_G0025167.1 mouse_genomes_project 19 43038949 43050423 - MGP_AJ_P0051956 Fbxw4 protein_coding protein_coding MGP_AJ_T0051072.1 MGP_AJ_G0024809.1 mouse_genomes_project 19 7015024 7047493 - MGP_AJ_P0051072 Myrf protein_coding protein_coding MGP_AJ_T0051073.1 MGP_AJ_G0024809.1 mouse_genomes_project 19 7016048 7047493 - Myrf protein_coding retained_intron MGP_AJ_T0051074.1 MGP_AJ_G0024809.1 mouse_genomes_project 19 7016447 7047490 - MGP_AJ_P0051074 Myrf protein_coding protein_coding MGP_AJ_T0051075.1 MGP_AJ_G0024809.1 mouse_genomes_project 19 7017043 7024288 - MGP_AJ_P0051075 Myrf protein_coding protein_coding MGP_AJ_T0051076.1 MGP_AJ_G0024809.1 mouse_genomes_project 19 7017128 7047349 - MGP_AJ_P0051076 Myrf protein_coding protein_coding MGP_AJ_T0051077.1 MGP_AJ_G0024809.1 mouse_genomes_project 19 7032776 7047493 - Myrf protein_coding retained_intron MGP_AJ_T0050588.1 MGP_AJ_G0024685.1 mouse_genomes_project 19 2476587 2487247 + MGP_AJ_P0050588 Rela protein_coding protein_coding MGP_AJ_T0052059.1 MGP_AJ_G0025198.1 mouse_genomes_project 19 44518238 44525935 - MGP_AJ_P0052059 Usmg5 protein_coding protein_coding MGP_AJ_T0051183.1 MGP_AJ_G0024849.1 mouse_genomes_project 19 8329068 8380454 + Gm8369 protein_coding processed_transcript MGP_AJ_T0051184.1 MGP_AJ_G0024849.1 mouse_genomes_project 19 8329170 8330307 + Gm8369 protein_coding processed_transcript MGP_AJ_T0051185.1 MGP_AJ_G0024849.1 mouse_genomes_project 19 8329239 8330196 + Gm8369 protein_coding retained_intron MGP_AJ_T0051186.1 MGP_AJ_G0024849.1 mouse_genomes_project 19 8365353 8386814 + MGP_AJ_P0051186 Gm8369 protein_coding protein_coding MGP_AJ_T0051187.1 MGP_AJ_G0024849.1 mouse_genomes_project 19 8365353 8385937 + MGP_AJ_P0051187 Gm8369 protein_coding nonsense_mediated_decay MGP_AJ_T0051188.1 MGP_AJ_G0024849.1 mouse_genomes_project 19 8365365 8382287 + Gm8369 protein_coding retained_intron MGP_AJ_T0051189.1 MGP_AJ_G0024849.1 mouse_genomes_project 19 8376406 8386814 + MGP_AJ_P0051189 Gm8369 protein_coding protein_coding MGP_AJ_T0010292.1 MGP_AJ_G0008414.1 mouse_genomes_project 19 6639751 6639855 + Gm22369 miRNA miRNA MGP_AJ_T0051281.1 MGP_AJ_G0024910.1 mouse_genomes_project 19 10226110 10227037 + MGP_AJ_P0051281 Olfr1467 protein_coding protein_coding MGP_AJ_T0100989.1 MGP_AJ_G0038955.1 mouse_genomes_project 19 8813105 8813239 - Gm22272 snoRNA snoRNA MGP_AJ_T0051724.1 MGP_AJ_G0025089.1 mouse_genomes_project 19 37824798 37863051 - MGP_AJ_P0051724 Aldh18a1 protein_coding protein_coding MGP_AJ_T0051725.1 MGP_AJ_G0025089.1 mouse_genomes_project 19 37824798 37862957 - MGP_AJ_P0051725 Aldh18a1 protein_coding protein_coding MGP_AJ_T0051726.1 MGP_AJ_G0025089.1 mouse_genomes_project 19 37825692 37829396 - Aldh18a1 protein_coding retained_intron MGP_AJ_T0051727.1 MGP_AJ_G0025089.1 mouse_genomes_project 19 37827957 37829274 - MGP_AJ_P0051727 Aldh18a1 protein_coding protein_coding MGP_AJ_T0051728.1 MGP_AJ_G0025089.1 mouse_genomes_project 19 37831603 37863011 - Aldh18a1 protein_coding retained_intron MGP_AJ_T0051729.1 MGP_AJ_G0025089.1 mouse_genomes_project 19 37848909 37862972 - MGP_AJ_P0051729 Aldh18a1 protein_coding protein_coding MGP_AJ_T0051730.1 MGP_AJ_G0025089.1 mouse_genomes_project 19 37852180 37862998 - MGP_AJ_P0051730 Aldh18a1 protein_coding protein_coding MGP_AJ_T0051731.1 MGP_AJ_G0025089.1 mouse_genomes_project 19 37852223 37862970 - MGP_AJ_P0051731 Aldh18a1 protein_coding protein_coding MGP_AJ_T0050694.1 MGP_AJ_G0024713.1 mouse_genomes_project 19 2943889 2950685 + MGP_AJ_P0050694 Cdca5 protein_coding protein_coding MGP_AJ_T0050695.1 MGP_AJ_G0024713.1 mouse_genomes_project 19 2944657 2950685 + Cdca5 protein_coding processed_transcript MGP_AJ_T0050696.1 MGP_AJ_G0024713.1 mouse_genomes_project 19 2944733 2950685 + Cdca5 protein_coding processed_transcript MGP_AJ_T0051015.1 MGP_AJ_G0024787.1 mouse_genomes_project 19 5840759 5842719 + MGP_AJ_P0051015 1810009A15Rik protein_coding protein_coding MGP_AJ_T0051017.1 MGP_AJ_G0024787.1 mouse_genomes_project 19 5840805 5842584 + 1810009A15Rik protein_coding retained_intron MGP_AJ_T0051018.1 MGP_AJ_G0024787.1 mouse_genomes_project 19 5840821 5842384 + MGP_AJ_P0051018 1810009A15Rik protein_coding nonsense_mediated_decay MGP_AJ_T0051019.1 MGP_AJ_G0024787.1 mouse_genomes_project 19 5840835 5842303 + 1810009A15Rik protein_coding retained_intron MGP_AJ_T0051020.1 MGP_AJ_G0024787.1 mouse_genomes_project 19 5840845 5842579 + 1810009A15Rik protein_coding retained_intron MGP_AJ_T0052050.1 MGP_AJ_G0025193.1 mouse_genomes_project 19 44188318 44308814 + MGP_AJ_P0052050 Cnnm2 protein_coding protein_coding MGP_AJ_T0052051.1 MGP_AJ_G0025193.1 mouse_genomes_project 19 44188318 44308814 + MGP_AJ_P0052051 Cnnm2 protein_coding protein_coding MGP_AJ_T0051275.1 MGP_AJ_G0024904.1 mouse_genomes_project 19 9988544 9989645 - MGP_AJ_P0051275 Olfr1459 protein_coding protein_coding MGP_AJ_T0051049.1 MGP_AJ_G0024800.1 mouse_genomes_project 19 6656764 6686106 - MGP_AJ_P0051049 Incenp protein_coding protein_coding MGP_AJ_T0051299.1 MGP_AJ_G0024928.1 mouse_genomes_project 19 10738495 10739443 - MGP_AJ_P0051299 Olfr1501 protein_coding protein_coding MGP_AJ_T0051635.1 MGP_AJ_G0025053.1 mouse_genomes_project 19 34221455 34407852 - MGP_AJ_P0051635 Cpeb3 protein_coding protein_coding MGP_AJ_T0051636.1 MGP_AJ_G0025053.1 mouse_genomes_project 19 34221461 34373919 - MGP_AJ_P0051636 Cpeb3 protein_coding protein_coding MGP_AJ_T0051637.1 MGP_AJ_G0025053.1 mouse_genomes_project 19 34222043 34375887 - MGP_AJ_P0051637 Cpeb3 protein_coding protein_coding MGP_AJ_T0051638.1 MGP_AJ_G0025053.1 mouse_genomes_project 19 34222043 34407852 - MGP_AJ_P0051638 Cpeb3 protein_coding protein_coding MGP_AJ_T0051639.1 MGP_AJ_G0025053.1 mouse_genomes_project 19 34223134 34407863 - MGP_AJ_P0051639 Cpeb3 protein_coding protein_coding MGP_AJ_T0051640.1 MGP_AJ_G0025053.1 mouse_genomes_project 19 34224097 34407683 - MGP_AJ_P0051640 Cpeb3 protein_coding protein_coding MGP_AJ_T0051641.1 MGP_AJ_G0025053.1 mouse_genomes_project 19 34224801 34397841 - MGP_AJ_P0051641 Cpeb3 protein_coding protein_coding MGP_AJ_T0051642.1 MGP_AJ_G0025053.1 mouse_genomes_project 19 34254311 34407898 - MGP_AJ_P0051642 Cpeb3 protein_coding protein_coding MGP_AJ_T0051643.1 MGP_AJ_G0025053.1 mouse_genomes_project 19 34374260 34377832 - MGP_AJ_P0051643 Cpeb3 protein_coding protein_coding MGP_AJ_T0051644.1 MGP_AJ_G0025053.1 mouse_genomes_project 19 34374416 34375880 - MGP_AJ_P0051644 Cpeb3 protein_coding protein_coding MGP_AJ_T0051645.1 MGP_AJ_G0025053.1 mouse_genomes_project 19 34374446 34408991 - MGP_AJ_P0051645 Cpeb3 protein_coding protein_coding MGP_AJ_T0051646.1 MGP_AJ_G0025053.1 mouse_genomes_project 19 34374511 34375040 - MGP_AJ_P0051646 Cpeb3 protein_coding protein_coding MGP_AJ_T0017692.1 MGP_AJ_G0015355.1 mouse_genomes_project 19 7005251 7009267 + Gm10143 processed_transcript processed_transcript MGP_AJ_T0017693.1 MGP_AJ_G0015355.1 mouse_genomes_project 19 7006070 7009265 + Gm10143 processed_transcript processed_transcript MGP_AJ_T0010298.1 MGP_AJ_G0008420.1 mouse_genomes_project 19 19713731 19713799 + Mir204 miRNA miRNA MGP_AJ_T0007086.1 MGP_AJ_G0005815.1 mouse_genomes_project 19 26539136 26574651 - A930007I19Rik lincRNA lincRNA MGP_AJ_T0007087.1 MGP_AJ_G0005815.1 mouse_genomes_project 19 26539715 26575816 - A930007I19Rik lincRNA lincRNA MGP_AJ_T0007088.1 MGP_AJ_G0005815.1 mouse_genomes_project 19 26556405 26574646 - A930007I19Rik lincRNA lincRNA MGP_AJ_T0007074.1 MGP_AJ_G0005807.1 mouse_genomes_project 19 12895254 12924608 + C130060C02Rik lincRNA lincRNA MGP_AJ_T0051222.1 MGP_AJ_G0024866.1 mouse_genomes_project 19 8847660 8876282 + MGP_AJ_P0051222 Osbp protein_coding protein_coding MGP_AJ_T0051927.1 MGP_AJ_G0025157.1 mouse_genomes_project 19 42404429 42411225 + MGP_AJ_P0051927 Peo1 protein_coding protein_coding MGP_AJ_T0051703.1 MGP_AJ_G0025079.1 mouse_genomes_project 19 36898537 37030542 - MGP_AJ_P0051703 protein_coding protein_coding MGP_AJ_T0050656.1 MGP_AJ_G0024707.1 mouse_genomes_project 19 2919376 2920657 + MGP_AJ_P0050656 Znhit2 protein_coding protein_coding MGP_AJ_T0051904.1 MGP_AJ_G0025149.1 mouse_genomes_project 19 41907625 41936573 - MGP_AJ_P0051904 Sec31b protein_coding protein_coding MGP_AJ_T0051905.1 MGP_AJ_G0025149.1 mouse_genomes_project 19 41907959 41936544 - MGP_AJ_P0051905 Sec31b protein_coding protein_coding MGP_AJ_T0051906.1 MGP_AJ_G0025149.1 mouse_genomes_project 19 41908299 41911248 - MGP_AJ_P0051906 Sec31b protein_coding nonsense_mediated_decay MGP_AJ_T0013376.1 MGP_AJ_G0011471.1 mouse_genomes_project 19 5540628 5541418 - processed_pseudogene processed_pseudogene MGP_AJ_T0051393.1 MGP_AJ_G0024970.1 mouse_genomes_project 19 21243901 21263609 - MGP_AJ_P0051393 Fxn protein_coding nonsense_mediated_decay MGP_AJ_T0051394.1 MGP_AJ_G0024970.1 mouse_genomes_project 19 21243901 21263646 - MGP_AJ_P0051394 Fxn protein_coding protein_coding MGP_AJ_T0051395.1 MGP_AJ_G0024970.1 mouse_genomes_project 19 21244189 21261224 - Fxn protein_coding retained_intron MGP_AJ_T0050731.1 MGP_AJ_G0024724.1 mouse_genomes_project 19 3171075 3190272 + MGP_AJ_P0050731 Cdc42bpg protein_coding protein_coding MGP_AJ_T0050732.1 MGP_AJ_G0024724.1 mouse_genomes_project 19 3186427 3186852 + Cdc42bpg protein_coding retained_intron MGP_AJ_T0051907.1 MGP_AJ_G0025150.1 mouse_genomes_project 19 41934267 41943534 - MGP_AJ_P0051907 Gm20538 protein_coding protein_coding MGP_AJ_T0099728.1 MGP_AJ_G0037694.1 mouse_genomes_project 19 23272820 23272945 - Gm25176 snRNA snRNA MGP_AJ_T0051096.1 MGP_AJ_G0024818.1 mouse_genomes_project 19 7385900 7398079 + MGP_AJ_P0051096 Cyb561a3 protein_coding protein_coding MGP_AJ_T0051296.1 MGP_AJ_G0024925.1 mouse_genomes_project 19 10694961 10695906 - MGP_AJ_P0051296 Olfr1497 protein_coding protein_coding MGP_AJ_T0051560.1 MGP_AJ_G0025020.1 mouse_genomes_project 19 29849451 29917301 + MGP_AJ_P0051560 Pten protein_coding protein_coding MGP_AJ_T0051561.1 MGP_AJ_G0025020.1 mouse_genomes_project 19 29849549 29893992 + Pten protein_coding retained_intron MGP_AJ_T0051562.1 MGP_AJ_G0025020.1 mouse_genomes_project 19 29902360 29909109 + Pten protein_coding retained_intron MGP_AJ_T0051062.1 MGP_AJ_G0024805.1 mouse_genomes_project 19 6870076 6908480 - MGP_AJ_P0051062 Fads2 protein_coding protein_coding MGP_AJ_T0051542.1 MGP_AJ_G0025015.1 mouse_genomes_project 19 29071979 29145499 - MGP_AJ_P0051542 Asah2 protein_coding protein_coding MGP_AJ_T0051234.1 MGP_AJ_G0024878.1 mouse_genomes_project 19 9236089 9237037 + MGP_AJ_P0051234 Olfr1440 protein_coding protein_coding MGP_AJ_T0051276.1 MGP_AJ_G0024905.1 mouse_genomes_project 19 10008699 10009638 + MGP_AJ_P0051276 Olfr1461 protein_coding protein_coding MGP_AJ_T0050456.1 MGP_AJ_G0024633.1 mouse_genomes_project 19 1422024 1425907 - MGP_AJ_P0050456 Lrfn4 protein_coding protein_coding MGP_AJ_T0050457.1 MGP_AJ_G0024633.1 mouse_genomes_project 19 1422031 1425742 - MGP_AJ_P0050457 Lrfn4 protein_coding protein_coding MGP_AJ_T0051694.1 MGP_AJ_G0025073.1 mouse_genomes_project 19 36268810 36311559 + MGP_AJ_P0051694 Cyp2c55 protein_coding protein_coding MGP_AJ_T0051852.1 MGP_AJ_G0025131.1 mouse_genomes_project 19 41024734 41035807 - MGP_AJ_P0051852 Slc25a28 protein_coding protein_coding MGP_AJ_T0052203.1 MGP_AJ_G0025244.1 mouse_genomes_project 19 54334904 54372956 - MGP_AJ_P0052203 Ccdc186 protein_coding protein_coding MGP_AJ_T0052204.1 MGP_AJ_G0025244.1 mouse_genomes_project 19 54337954 54343237 - MGP_AJ_P0052204 Ccdc186 protein_coding protein_coding MGP_AJ_T0052205.1 MGP_AJ_G0025244.1 mouse_genomes_project 19 54338386 54364449 - MGP_AJ_P0052205 Ccdc186 protein_coding protein_coding MGP_AJ_T0052206.1 MGP_AJ_G0025244.1 mouse_genomes_project 19 54340385 54348270 - Ccdc186 protein_coding retained_intron MGP_AJ_T0052207.1 MGP_AJ_G0025244.1 mouse_genomes_project 19 54348117 54351748 - Ccdc186 protein_coding retained_intron MGP_AJ_T0052208.1 MGP_AJ_G0025244.1 mouse_genomes_project 19 54350800 54372956 - Ccdc186 protein_coding retained_intron MGP_AJ_T0050327.1 MGP_AJ_G0024600.1 mouse_genomes_project 19 689017 705285 - MGP_AJ_P0050327 Aldh3b1 protein_coding protein_coding MGP_AJ_T0003869.1 MGP_AJ_G0003460.1 mouse_genomes_project 19 39869760 39892135 - Gm16541 antisense antisense MGP_AJ_T0003870.1 MGP_AJ_G0003460.1 mouse_genomes_project 19 39869766 39892122 - Gm16541 antisense antisense MGP_AJ_T0003871.1 MGP_AJ_G0003460.1 mouse_genomes_project 19 39891533 39892135 - Gm16541 antisense antisense MGP_AJ_T0050618.1 MGP_AJ_G0024693.1 mouse_genomes_project 19 2581022 2598652 + MGP_AJ_P0050618 Ltbp3 protein_coding protein_coding MGP_AJ_T0051272.1 MGP_AJ_G0024901.1 mouse_genomes_project 19 9906878 9907802 + MGP_AJ_P0051272 Olfr1454 protein_coding protein_coding MGP_AJ_T0051202.1 MGP_AJ_G0024854.1 mouse_genomes_project 19 8507095 8518405 - MGP_AJ_P0051202 Ms4a3 protein_coding protein_coding MGP_AJ_T0051203.1 MGP_AJ_G0024854.1 mouse_genomes_project 19 8507098 8518434 - MGP_AJ_P0051203 Ms4a3 protein_coding protein_coding MGP_AJ_T0051204.1 MGP_AJ_G0024854.1 mouse_genomes_project 19 8509498 8518451 - Ms4a3 protein_coding retained_intron MGP_AJ_T0050413.1 MGP_AJ_G0024624.1 mouse_genomes_project 19 1034419 1036138 + MGP_AJ_P0050413 Pold4 protein_coding protein_coding MGP_AJ_T0050529.1 MGP_AJ_G0024662.1 mouse_genomes_project 19 2102160 2125136 - MGP_AJ_P0050529 Sf3b2 protein_coding protein_coding MGP_AJ_T0050518.1 MGP_AJ_G0024659.1 mouse_genomes_project 19 1926659 1934450 - MGP_AJ_P0050518 Rab1b protein_coding protein_coding MGP_AJ_T0051851.1 MGP_AJ_G0025130.1 mouse_genomes_project 19 40969543 40973117 + MGP_AJ_P0051851 Nkx2-3 protein_coding protein_coding MGP_AJ_T0051230.1 MGP_AJ_G0024874.1 mouse_genomes_project 19 9083019 9085255 + MGP_AJ_P0051230 protein_coding protein_coding MGP_AJ_T0013397.1 MGP_AJ_G0011492.1 mouse_genomes_project 19 44097769 44098776 - processed_pseudogene processed_pseudogene MGP_AJ_T0052030.1 MGP_AJ_G0025185.1 mouse_genomes_project 19 43815645 43907251 + MGP_AJ_P0052030 Sufu protein_coding protein_coding MGP_AJ_T0052031.1 MGP_AJ_G0025185.1 mouse_genomes_project 19 43815667 43904493 + MGP_AJ_P0052031 Sufu protein_coding protein_coding MGP_AJ_T0052032.1 MGP_AJ_G0025185.1 mouse_genomes_project 19 43815753 43874296 + MGP_AJ_P0052032 Sufu protein_coding protein_coding MGP_AJ_T0052033.1 MGP_AJ_G0025185.1 mouse_genomes_project 19 43815775 43895379 + MGP_AJ_P0052033 Sufu protein_coding protein_coding MGP_AJ_T0052034.1 MGP_AJ_G0025185.1 mouse_genomes_project 19 43876494 43894077 + Sufu protein_coding processed_transcript MGP_AJ_T0052035.1 MGP_AJ_G0025185.1 mouse_genomes_project 19 43901539 43904427 + Sufu protein_coding retained_intron MGP_AJ_T0051219.1 MGP_AJ_G0024863.1 mouse_genomes_project 19 8748693 8749853 - MGP_AJ_P0051219 Olfr1419 protein_coding protein_coding MGP_AJ_T0051708.1 MGP_AJ_G0025084.1 mouse_genomes_project 19 37298590 37344535 - MGP_AJ_P0051708 Cyp2c54 protein_coding protein_coding MGP_AJ_T0051760.1 MGP_AJ_G0025099.1 mouse_genomes_project 19 38589167 38704406 - MGP_AJ_P0051760 Pik3ap1 protein_coding unknown_likely_coding MGP_AJ_T0050338.1 MGP_AJ_G0024605.1 mouse_genomes_project 19 771100 777860 + MGP_AJ_P0050338 Tbx10 protein_coding protein_coding MGP_AJ_T0013379.1 MGP_AJ_G0011474.1 mouse_genomes_project 19 8580161 8580954 - processed_pseudogene processed_pseudogene MGP_AJ_T0010312.1 MGP_AJ_G0008434.1 mouse_genomes_project 19 39609133 39609222 - Mir3085 miRNA miRNA MGP_AJ_T0051298.1 MGP_AJ_G0024927.1 mouse_genomes_project 19 10727710 10728735 - MGP_AJ_P0051298 Olfr1500 protein_coding protein_coding MGP_AJ_T0051844.1 MGP_AJ_G0025127.1 mouse_genomes_project 19 40117594 40740321 - MGP_AJ_P0051844 Hpse2 protein_coding protein_coding MGP_AJ_T0051774.1 MGP_AJ_G0025105.1 mouse_genomes_project 19 39161251 39164255 - MGP_AJ_P0051774 Frat2 protein_coding protein_coding MGP_AJ_T0051800.1 MGP_AJ_G0025112.1 mouse_genomes_project 19 39361177 39370292 + MGP_AJ_P0051800 Ankrd2 protein_coding protein_coding MGP_AJ_T0051266.1 MGP_AJ_G0024895.1 mouse_genomes_project 19 9747867 9749079 - MGP_AJ_P0051266 Olfr1447 protein_coding protein_coding MGP_AJ_T0051312.1 MGP_AJ_G0024934.1 mouse_genomes_project 19 12864820 12895154 - MGP_AJ_P0051312 Cep78 protein_coding protein_coding MGP_AJ_T0010302.1 MGP_AJ_G0008424.1 mouse_genomes_project 19 30259801 30259891 + Mir3970 miRNA miRNA MGP_AJ_T0052100.1 MGP_AJ_G0025212.1 mouse_genomes_project 19 45325277 45345997 + MGP_AJ_P0052100 Gsto2 protein_coding protein_coding MGP_AJ_T0052101.1 MGP_AJ_G0025212.1 mouse_genomes_project 19 45325499 45345997 + MGP_AJ_P0052101 Gsto2 protein_coding protein_coding MGP_AJ_T0052102.1 MGP_AJ_G0025212.1 mouse_genomes_project 19 45329982 45344412 + MGP_AJ_P0052102 Gsto2 protein_coding protein_coding MGP_AJ_T0051197.1 MGP_AJ_G0024853.1 mouse_genomes_project 19 8488731 8496847 - MGP_AJ_P0051197 Ms4a2 protein_coding protein_coding MGP_AJ_T0051198.1 MGP_AJ_G0024853.1 mouse_genomes_project 19 8490165 8496882 - MGP_AJ_P0051198 Ms4a2 protein_coding protein_coding MGP_AJ_T0051199.1 MGP_AJ_G0024853.1 mouse_genomes_project 19 8490401 8496806 - MGP_AJ_P0051199 Ms4a2 protein_coding protein_coding MGP_AJ_T0051200.1 MGP_AJ_G0024853.1 mouse_genomes_project 19 8490681 8496822 - MGP_AJ_P0051200 Ms4a2 protein_coding protein_coding MGP_AJ_T0051201.1 MGP_AJ_G0024853.1 mouse_genomes_project 19 8492135 8496851 - Ms4a2 protein_coding processed_transcript MGP_AJ_T0051770.1 MGP_AJ_G0025104.1 mouse_genomes_project 19 39077203 39112392 - MGP_AJ_P0051770 Arhgap19 protein_coding protein_coding MGP_AJ_T0051771.1 MGP_AJ_G0025104.1 mouse_genomes_project 19 39077206 39112429 - MGP_AJ_P0051771 Arhgap19 protein_coding protein_coding MGP_AJ_T0051772.1 MGP_AJ_G0025104.1 mouse_genomes_project 19 39080299 39091891 - MGP_AJ_P0051772 Arhgap19 protein_coding protein_coding MGP_AJ_T0051773.1 MGP_AJ_G0025104.1 mouse_genomes_project 19 39080494 39112392 - MGP_AJ_P0051773 Arhgap19 protein_coding protein_coding MGP_AJ_T0051586.1 MGP_AJ_G0025033.1 mouse_genomes_project 19 31369956 31384128 - MGP_AJ_P0051586 Acta2 protein_coding protein_coding MGP_AJ_T0051011.1 MGP_AJ_G0024785.1 mouse_genomes_project 19 5831926 5832844 - MGP_AJ_P0051011 Uqcc3 protein_coding protein_coding MGP_AJ_T0050589.1 MGP_AJ_G0024686.1 mouse_genomes_project 19 2490277 2503266 - MGP_AJ_P0050589 Sipa1 protein_coding protein_coding MGP_AJ_T0050590.1 MGP_AJ_G0024686.1 mouse_genomes_project 19 2490277 2503266 - MGP_AJ_P0050590 Sipa1 protein_coding protein_coding MGP_AJ_T0050591.1 MGP_AJ_G0024686.1 mouse_genomes_project 19 2490277 2503266 - MGP_AJ_P0050591 Sipa1 protein_coding protein_coding MGP_AJ_T0050592.1 MGP_AJ_G0024686.1 mouse_genomes_project 19 2490277 2503266 - MGP_AJ_P0050592 Sipa1 protein_coding protein_coding MGP_AJ_T0050326.1 MGP_AJ_G0024599.1 mouse_genomes_project 19 684386 688276 - MGP_AJ_P0050326 Ndufs8 protein_coding unknown_likely_coding MGP_AJ_T0050830.1 MGP_AJ_G0024734.1 mouse_genomes_project 19 3667371 3670653 - Prdx5 protein_coding retained_intron MGP_AJ_T0050831.1 MGP_AJ_G0024734.1 mouse_genomes_project 19 3667380 3670781 - MGP_AJ_P0050831 Prdx5 protein_coding protein_coding MGP_AJ_T0050832.1 MGP_AJ_G0024734.1 mouse_genomes_project 19 3667424 3668976 - MGP_AJ_P0050832 Prdx5 protein_coding protein_coding MGP_AJ_T0050833.1 MGP_AJ_G0024734.1 mouse_genomes_project 19 3667520 3670292 - MGP_AJ_P0050833 Prdx5 protein_coding protein_coding MGP_AJ_T0007073.1 MGP_AJ_G0005806.1 mouse_genomes_project 19 8305985 8308866 + Gm37387 lincRNA lincRNA MGP_AJ_T0051300.1 MGP_AJ_G0024929.1 mouse_genomes_project 19 10763296 10767559 + MGP_AJ_P0051300 Olfr1502 protein_coding protein_coding MGP_AJ_T0101763.1 MGP_AJ_G0039687.1 mouse_genomes_project 19 9686520 9687262 + transcribed_processed_pseudogene processed_transcript MGP_AJ_T0101764.1 MGP_AJ_G0039687.1 mouse_genomes_project 19 9686704 9687042 + transcribed_processed_pseudogene transcribed_processed_pseudogene MGP_AJ_T0050261.1 MGP_AJ_G0024588.1 mouse_genomes_project 19 26235 47812 - MGP_AJ_P0050261 Ighmbp2 protein_coding protein_coding MGP_AJ_T0050262.1 MGP_AJ_G0024588.1 mouse_genomes_project 19 29621 48006 - MGP_AJ_P0050262 Ighmbp2 protein_coding nonsense_mediated_decay MGP_AJ_T0050263.1 MGP_AJ_G0024588.1 mouse_genomes_project 19 30167 32544 - Ighmbp2 protein_coding retained_intron MGP_AJ_T0052105.1 MGP_AJ_G0025214.1 mouse_genomes_project 19 45676168 46280063 + MGP_AJ_P0052105 Sorcs3 protein_coding protein_coding MGP_AJ_T0050484.1 MGP_AJ_G0024642.1 mouse_genomes_project 19 1655696 1658859 + MGP_AJ_P0050484 Ccdc87 protein_coding protein_coding MGP_AJ_T0051707.1 MGP_AJ_G0025083.1 mouse_genomes_project 19 37221060 37255029 + MGP_AJ_P0051707 Cyp2c37 protein_coding unknown_likely_coding MGP_AJ_T0051942.1 MGP_AJ_G0025164.1 mouse_genomes_project 19 42762885 42934932 + MGP_AJ_P0051942 Btrc protein_coding protein_coding MGP_AJ_T0051943.1 MGP_AJ_G0025164.1 mouse_genomes_project 19 42762885 42934932 + MGP_AJ_P0051943 Btrc protein_coding protein_coding MGP_AJ_T0051944.1 MGP_AJ_G0025164.1 mouse_genomes_project 19 42762990 42931501 + MGP_AJ_P0051944 Btrc protein_coding unknown_likely_coding MGP_AJ_T0051801.1 MGP_AJ_G0025113.1 mouse_genomes_project 19 39370791 39377471 + Hoga1 protein_coding processed_transcript MGP_AJ_T0051802.1 MGP_AJ_G0025113.1 mouse_genomes_project 19 39370973 39395388 + MGP_AJ_P0051802 Hoga1 protein_coding protein_coding MGP_AJ_T0051803.1 MGP_AJ_G0025113.1 mouse_genomes_project 19 39371013 39395975 + MGP_AJ_P0051803 Hoga1 protein_coding protein_coding MGP_AJ_T0051804.1 MGP_AJ_G0025113.1 mouse_genomes_project 19 39371032 39385351 + Hoga1 protein_coding retained_intron MGP_AJ_T0010301.1 MGP_AJ_G0008423.1 mouse_genomes_project 19 27340210 27340287 - Gm24108 miRNA miRNA MGP_AJ_T0051386.1 MGP_AJ_G0024963.1 mouse_genomes_project 19 20530862 20628977 - MGP_AJ_P0051386 1700028P14Rik protein_coding protein_coding MGP_AJ_T0051051.1 MGP_AJ_G0024802.1 mouse_genomes_project 19 6788289 6806328 - MGP_AJ_P0051051 Best1 protein_coding protein_coding MGP_AJ_T0051052.1 MGP_AJ_G0024802.1 mouse_genomes_project 19 6793644 6795991 - Best1 protein_coding processed_transcript MGP_AJ_T0050503.1 MGP_AJ_G0024649.1 mouse_genomes_project 19 1781129 1785824 + MGP_AJ_P0050503 Mrpl11 protein_coding protein_coding MGP_AJ_T0099730.1 MGP_AJ_G0037696.1 mouse_genomes_project 19 31937493 31937654 + Gm22082 snRNA snRNA MGP_AJ_T0051860.1 MGP_AJ_G0025134.1 mouse_genomes_project 19 41117276 41133277 + MGP_AJ_P0051860 Cutc protein_coding protein_coding MGP_AJ_T0051861.1 MGP_AJ_G0025134.1 mouse_genomes_project 19 41117378 41133284 + MGP_AJ_P0051861 Cutc protein_coding protein_coding MGP_AJ_T0051862.1 MGP_AJ_G0025134.1 mouse_genomes_project 19 41117417 41132884 + MGP_AJ_P0051862 Cutc protein_coding protein_coding MGP_AJ_T0051863.1 MGP_AJ_G0025134.1 mouse_genomes_project 19 41129509 41133284 + Cutc protein_coding retained_intron MGP_AJ_T0050641.1 MGP_AJ_G0024701.1 mouse_genomes_project 19 2822215 2839947 - MGP_AJ_P0050641 Slc22a20 protein_coding protein_coding MGP_AJ_T0051750.1 MGP_AJ_G0025093.1 mouse_genomes_project 19 38199107 38222188 + MGP_AJ_P0051750 Zfp518a protein_coding protein_coding MGP_AJ_T0013401.1 MGP_AJ_G0011496.1 mouse_genomes_project 19 56379860 56380241 + processed_pseudogene processed_pseudogene MGP_AJ_T0050462.1 MGP_AJ_G0024636.1 mouse_genomes_project 19 1528825 1570005 + MGP_AJ_P0050462 Sptbn2 protein_coding protein_coding MGP_AJ_T0051688.1 MGP_AJ_G0025072.1 mouse_genomes_project 19 36183231 36229435 + MGP_AJ_P0051688 Hells protein_coding protein_coding MGP_AJ_T0051689.1 MGP_AJ_G0025072.1 mouse_genomes_project 19 36183346 36192762 + Hells protein_coding retained_intron MGP_AJ_T0051690.1 MGP_AJ_G0025072.1 mouse_genomes_project 19 36183490 36196181 + MGP_AJ_P0051690 Hells protein_coding protein_coding MGP_AJ_T0051691.1 MGP_AJ_G0025072.1 mouse_genomes_project 19 36183706 36205800 + Hells protein_coding processed_transcript MGP_AJ_T0051692.1 MGP_AJ_G0025072.1 mouse_genomes_project 19 36186824 36192863 + Hells protein_coding retained_intron MGP_AJ_T0051693.1 MGP_AJ_G0025072.1 mouse_genomes_project 19 36195955 36202742 + Hells protein_coding processed_transcript MGP_AJ_T0007109.1 MGP_AJ_G0005831.1 mouse_genomes_project 19 43409848 43425146 + 4930505N22Rik lincRNA lincRNA MGP_AJ_T0051592.1 MGP_AJ_G0025037.1 mouse_genomes_project 19 31679072 31701663 + MGP_AJ_P0051592 Ifit2 protein_coding protein_coding MGP_AJ_T0051593.1 MGP_AJ_G0025037.1 mouse_genomes_project 19 31679088 31704890 + MGP_AJ_P0051593 Ifit2 protein_coding protein_coding MGP_AJ_T0003878.1 MGP_AJ_G0003467.1 mouse_genomes_project 19 51334878 51340636 - Gm16299 antisense antisense MGP_AJ_T0013384.1 MGP_AJ_G0011479.1 mouse_genomes_project 19 17560152 17560836 - processed_pseudogene processed_pseudogene MGP_AJ_T0052130.1 MGP_AJ_G0025223.1 mouse_genomes_project 19 51033017 51046257 + MGP_AJ_P0052130 Dusp5 protein_coding protein_coding MGP_AJ_T0007104.1 MGP_AJ_G0005828.1 mouse_genomes_project 19 42704691 42705639 - Gm29593 lincRNA lincRNA MGP_AJ_T0051265.1 MGP_AJ_G0024894.1 mouse_genomes_project 19 9735972 9737276 - MGP_AJ_P0051265 protein_coding protein_coding MGP_AJ_T0051048.1 MGP_AJ_G0024799.1 mouse_genomes_project 19 6631989 6637236 + MGP_AJ_P0051048 Scgb2a2 protein_coding protein_coding MGP_AJ_T0050727.1 MGP_AJ_G0024723.1 mouse_genomes_project 19 3141366 3164701 + MGP_AJ_P0050727 Ehd1 protein_coding protein_coding MGP_AJ_T0050728.1 MGP_AJ_G0024723.1 mouse_genomes_project 19 3141566 3146034 + Ehd1 protein_coding retained_intron MGP_AJ_T0050729.1 MGP_AJ_G0024723.1 mouse_genomes_project 19 3158822 3162482 + Ehd1 protein_coding retained_intron MGP_AJ_T0050730.1 MGP_AJ_G0024723.1 mouse_genomes_project 19 3162518 3162965 + Ehd1 protein_coding processed_transcript MGP_AJ_T0051400.1 MGP_AJ_G0024974.1 mouse_genomes_project 19 21669472 21844059 - MGP_AJ_P0051400 Pgm5 protein_coding protein_coding MGP_AJ_T0051401.1 MGP_AJ_G0024974.1 mouse_genomes_project 19 21671009 21749936 - Pgm5 protein_coding processed_transcript MGP_AJ_T0051402.1 MGP_AJ_G0024974.1 mouse_genomes_project 19 21803734 21843891 - Pgm5 protein_coding retained_intron MGP_AJ_T0051403.1 MGP_AJ_G0024974.1 mouse_genomes_project 19 21803836 21843856 - Pgm5 protein_coding retained_intron MGP_AJ_T0011479.1 MGP_AJ_G0009601.1 mouse_genomes_project 19 27790716 27791034 + Gm23426 misc_RNA misc_RNA MGP_AJ_T0007094.1 MGP_AJ_G0005820.1 mouse_genomes_project 19 33003263 33090526 - A830019P07Rik lincRNA lincRNA MGP_AJ_T0050926.1 MGP_AJ_G0024765.1 mouse_genomes_project 19 4587113 4608651 - MGP_AJ_P0050926 Slc22a26 protein_coding protein_coding MGP_AJ_T0050927.1 MGP_AJ_G0024765.1 mouse_genomes_project 19 4588052 4608740 - MGP_AJ_P0050927 Slc22a26 protein_coding protein_coding MGP_AJ_T0050928.1 MGP_AJ_G0024765.1 mouse_genomes_project 19 4590265 4608522 - MGP_AJ_P0050928 Slc22a26 protein_coding unknown_likely_coding MGP_AJ_T0051903.1 MGP_AJ_G0025148.1 mouse_genomes_project 19 41883324 41905023 + MGP_AJ_P0051903 Wnt8b protein_coding protein_coding MGP_AJ_T0050580.1 MGP_AJ_G0024681.1 mouse_genomes_project 19 2384684 2396123 - MGP_AJ_P0050580 Ovol1 protein_coding protein_coding MGP_AJ_T0051706.1 MGP_AJ_G0025082.1 mouse_genomes_project 19 36986608 37030543 - MGP_AJ_P0051706 protein_coding protein_coding MGP_AJ_T0051624.1 MGP_AJ_G0025050.1 mouse_genomes_project 19 34031238 34091085 + MGP_AJ_P0051624 Tnks2 protein_coding protein_coding MGP_AJ_T0051625.1 MGP_AJ_G0025050.1 mouse_genomes_project 19 34031410 34053154 + Tnks2 protein_coding processed_transcript MGP_AJ_T0051626.1 MGP_AJ_G0025050.1 mouse_genomes_project 19 34046588 34052229 + Tnks2 protein_coding retained_intron MGP_AJ_T0051627.1 MGP_AJ_G0025050.1 mouse_genomes_project 19 34054714 34059537 + Tnks2 protein_coding retained_intron MGP_AJ_T0051628.1 MGP_AJ_G0025050.1 mouse_genomes_project 19 34055097 34070117 + MGP_AJ_P0051628 Tnks2 protein_coding protein_coding MGP_AJ_T0051629.1 MGP_AJ_G0025050.1 mouse_genomes_project 19 34056310 34063490 + MGP_AJ_P0051629 Tnks2 protein_coding protein_coding MGP_AJ_T0051630.1 MGP_AJ_G0025050.1 mouse_genomes_project 19 34069404 34081790 + MGP_AJ_P0051630 Tnks2 protein_coding protein_coding MGP_AJ_T0051631.1 MGP_AJ_G0025050.1 mouse_genomes_project 19 34076220 34080787 + Tnks2 protein_coding retained_intron MGP_AJ_T0051632.1 MGP_AJ_G0025050.1 mouse_genomes_project 19 34078278 34085081 + Tnks2 protein_coding retained_intron MGP_AJ_T0050620.1 MGP_AJ_G0024695.1 mouse_genomes_project 19 2692273 2718381 - MGP_AJ_P0050620 Frmd8 protein_coding protein_coding MGP_AJ_T0050621.1 MGP_AJ_G0024695.1 mouse_genomes_project 19 2705363 2706790 - Frmd8 protein_coding retained_intron MGP_AJ_T0050622.1 MGP_AJ_G0024695.1 mouse_genomes_project 19 2708291 2716535 - Frmd8 protein_coding retained_intron MGP_AJ_T0050623.1 MGP_AJ_G0024695.1 mouse_genomes_project 19 2708377 2718346 - MGP_AJ_P0050623 Frmd8 protein_coding protein_coding MGP_AJ_T0050506.1 MGP_AJ_G0024652.1 mouse_genomes_project 19 1857591 1859912 + MGP_AJ_P0050506 B4gat1 protein_coding protein_coding MGP_AJ_T0052126.1 MGP_AJ_G0025220.1 mouse_genomes_project 19 50800196 50875105 + MGP_AJ_P0052126 Mxi1 protein_coding protein_coding MGP_AJ_T0052127.1 MGP_AJ_G0025220.1 mouse_genomes_project 19 50828169 50872587 + MGP_AJ_P0052127 Mxi1 protein_coding protein_coding MGP_AJ_T0050552.1 MGP_AJ_G0024676.1 mouse_genomes_project 19 2308685 2312282 + MGP_AJ_P0050552 Efemp2 protein_coding protein_coding MGP_AJ_T0050553.1 MGP_AJ_G0024676.1 mouse_genomes_project 19 2309027 2310777 + MGP_AJ_P0050553 Efemp2 protein_coding protein_coding MGP_AJ_T0050554.1 MGP_AJ_G0024676.1 mouse_genomes_project 19 2309400 2316555 + MGP_AJ_P0050554 Efemp2 protein_coding protein_coding MGP_AJ_T0050555.1 MGP_AJ_G0024676.1 mouse_genomes_project 19 2309419 2313068 + Efemp2 protein_coding retained_intron MGP_AJ_T0050556.1 MGP_AJ_G0024676.1 mouse_genomes_project 19 2309448 2315443 + MGP_AJ_P0050556 Efemp2 protein_coding protein_coding MGP_AJ_T0050557.1 MGP_AJ_G0024676.1 mouse_genomes_project 19 2309448 2316555 + MGP_AJ_P0050557 Efemp2 protein_coding protein_coding MGP_AJ_T0050558.1 MGP_AJ_G0024676.1 mouse_genomes_project 19 2309455 2312960 + MGP_AJ_P0050558 Efemp2 protein_coding protein_coding MGP_AJ_T0050559.1 MGP_AJ_G0024676.1 mouse_genomes_project 19 2309458 2316555 + MGP_AJ_P0050559 Efemp2 protein_coding protein_coding MGP_AJ_T0050560.1 MGP_AJ_G0024676.1 mouse_genomes_project 19 2309485 2310177 + Efemp2 protein_coding retained_intron MGP_AJ_T0050561.1 MGP_AJ_G0024676.1 mouse_genomes_project 19 2309776 2313024 + MGP_AJ_P0050561 Efemp2 protein_coding nonsense_mediated_decay MGP_AJ_T0050562.1 MGP_AJ_G0024676.1 mouse_genomes_project 19 2309828 2316477 + MGP_AJ_P0050562 Efemp2 protein_coding protein_coding MGP_AJ_T0050563.1 MGP_AJ_G0024676.1 mouse_genomes_project 19 2310013 2314781 + MGP_AJ_P0050563 Efemp2 protein_coding protein_coding MGP_AJ_T0050564.1 MGP_AJ_G0024676.1 mouse_genomes_project 19 2314746 2315618 + MGP_AJ_P0050564 Efemp2 protein_coding protein_coding MGP_AJ_T0050565.1 MGP_AJ_G0024676.1 mouse_genomes_project 19 2314824 2316361 + MGP_AJ_P0050565 Efemp2 protein_coding nonsense_mediated_decay MGP_AJ_T0051214.1 MGP_AJ_G0024860.1 mouse_genomes_project 19 8652369 8697825 - MGP_AJ_P0051214 Stx3 protein_coding protein_coding MGP_AJ_T0051215.1 MGP_AJ_G0024860.1 mouse_genomes_project 19 8652369 8697279 - MGP_AJ_P0051215 Stx3 protein_coding protein_coding MGP_AJ_T0051216.1 MGP_AJ_G0024860.1 mouse_genomes_project 19 8654875 8697825 - MGP_AJ_P0051216 Stx3 protein_coding protein_coding MGP_AJ_T0051824.1 MGP_AJ_G0025123.1 mouse_genomes_project 19 39851003 39921093 + MGP_AJ_P0051824 R3hcc1l protein_coding protein_coding MGP_AJ_T0051825.1 MGP_AJ_G0025123.1 mouse_genomes_project 19 39851042 39919761 + MGP_AJ_P0051825 R3hcc1l protein_coding protein_coding MGP_AJ_T0051826.1 MGP_AJ_G0025123.1 mouse_genomes_project 19 39851066 39904802 + MGP_AJ_P0051826 R3hcc1l protein_coding protein_coding MGP_AJ_T0051827.1 MGP_AJ_G0025123.1 mouse_genomes_project 19 39893267 39905370 + R3hcc1l protein_coding retained_intron MGP_AJ_T0051828.1 MGP_AJ_G0025123.1 mouse_genomes_project 19 39909902 39913497 + R3hcc1l protein_coding retained_intron MGP_AJ_T0051567.1 MGP_AJ_G0025024.1 mouse_genomes_project 19 30687914 30725348 - MGP_AJ_P0051567 Lipo3 protein_coding protein_coding MGP_AJ_T0051568.1 MGP_AJ_G0025024.1 mouse_genomes_project 19 30688938 30693987 - Lipo3 protein_coding retained_intron MGP_AJ_T0052097.1 MGP_AJ_G0025211.1 mouse_genomes_project 19 45314868 45324519 + MGP_AJ_P0052097 Gsto1 protein_coding protein_coding MGP_AJ_T0052098.1 MGP_AJ_G0025211.1 mouse_genomes_project 19 45314981 45315624 + Gsto1 protein_coding retained_intron MGP_AJ_T0052099.1 MGP_AJ_G0025211.1 mouse_genomes_project 19 45322723 45324296 + Gsto1 protein_coding retained_intron MGP_AJ_T0050717.1 MGP_AJ_G0024720.1 mouse_genomes_project 19 3091566 3092955 + MGP_AJ_P0050717 Gpha2 protein_coding protein_coding MGP_AJ_T0050718.1 MGP_AJ_G0024720.1 mouse_genomes_project 19 3091574 3092955 + MGP_AJ_P0050718 Gpha2 protein_coding protein_coding MGP_AJ_T0050277.1 MGP_AJ_G0024594.1 mouse_genomes_project 19 355341 458812 - MGP_AJ_P0050277 Lrp5 protein_coding protein_coding MGP_AJ_T0050278.1 MGP_AJ_G0024594.1 mouse_genomes_project 19 355344 458817 - MGP_AJ_P0050278 Lrp5 protein_coding nonsense_mediated_decay MGP_AJ_T0050279.1 MGP_AJ_G0024594.1 mouse_genomes_project 19 355349 388230 - MGP_AJ_P0050279 Lrp5 protein_coding nonsense_mediated_decay MGP_AJ_T0050280.1 MGP_AJ_G0024594.1 mouse_genomes_project 19 394089 458820 - MGP_AJ_P0050280 Lrp5 protein_coding protein_coding MGP_AJ_T0050876.1 MGP_AJ_G0024753.1 mouse_genomes_project 19 3982510 3984965 - MGP_AJ_P0050876 Cox8a protein_coding protein_coding MGP_AJ_T0099724.1 MGP_AJ_G0037690.1 mouse_genomes_project 19 14808259 14808362 - Gm22880 snRNA snRNA MGP_AJ_T0051008.1 MGP_AJ_G0024783.1 mouse_genomes_project 19 5803242 5806367 + MGP_AJ_P0051008 Lrrn4cl protein_coding protein_coding MGP_AJ_T0051123.1 MGP_AJ_G0024829.1 mouse_genomes_project 19 7712123 7722425 + MGP_AJ_P0051123 Prpf19 protein_coding protein_coding MGP_AJ_T0051124.1 MGP_AJ_G0024829.1 mouse_genomes_project 19 7712169 7714804 + Prpf19 protein_coding retained_intron MGP_AJ_T0051125.1 MGP_AJ_G0024829.1 mouse_genomes_project 19 7712174 7715153 + Prpf19 protein_coding retained_intron MGP_AJ_T0051126.1 MGP_AJ_G0024829.1 mouse_genomes_project 19 7712265 7716260 + Prpf19 protein_coding retained_intron MGP_AJ_T0051127.1 MGP_AJ_G0024829.1 mouse_genomes_project 19 7712306 7726451 + MGP_AJ_P0051127 Prpf19 protein_coding protein_coding MGP_AJ_T0051128.1 MGP_AJ_G0024829.1 mouse_genomes_project 19 7715537 7722399 + Prpf19 protein_coding processed_transcript MGP_AJ_T0051129.1 MGP_AJ_G0024829.1 mouse_genomes_project 19 7716261 7719653 + Prpf19 protein_coding retained_intron MGP_AJ_T0051130.1 MGP_AJ_G0024829.1 mouse_genomes_project 19 7717174 7717886 + Prpf19 protein_coding retained_intron MGP_AJ_T0051732.1 MGP_AJ_G0025090.1 mouse_genomes_project 19 37872131 37887909 - MGP_AJ_P0051732 Tctn3 protein_coding protein_coding MGP_AJ_T0051733.1 MGP_AJ_G0025090.1 mouse_genomes_project 19 37880764 37887879 - MGP_AJ_P0051733 Tctn3 protein_coding protein_coding MGP_AJ_T0051734.1 MGP_AJ_G0025090.1 mouse_genomes_project 19 37882791 37887876 - MGP_AJ_P0051734 Tctn3 protein_coding protein_coding MGP_AJ_T0051735.1 MGP_AJ_G0025090.1 mouse_genomes_project 19 37886800 37887864 - Tctn3 protein_coding retained_intron MGP_AJ_T0051205.1 MGP_AJ_G0024855.1 mouse_genomes_project 19 8526292 8539744 - MGP_AJ_P0051205 Oosp2 protein_coding protein_coding MGP_AJ_T0051206.1 MGP_AJ_G0024855.1 mouse_genomes_project 19 8526293 8539787 - MGP_AJ_P0051206 Oosp2 protein_coding protein_coding MGP_AJ_T0050991.1 MGP_AJ_G0024778.1 mouse_genomes_project 19 5754671 5756996 + MGP_AJ_P0050991 Zbtb3 protein_coding protein_coding MGP_AJ_T0010287.1 MGP_AJ_G0008409.1 mouse_genomes_project 19 3587956 3588015 - Mir5046 miRNA miRNA MGP_AJ_T0052145.1 MGP_AJ_G0025231.1 mouse_genomes_project 19 52719458 52728392 + MGP_AJ_P0052145 Tectb protein_coding protein_coding MGP_AJ_T0052146.1 MGP_AJ_G0025231.1 mouse_genomes_project 19 52719461 52733594 + MGP_AJ_P0052146 Tectb protein_coding protein_coding MGP_AJ_T0052147.1 MGP_AJ_G0025231.1 mouse_genomes_project 19 52719610 52735038 + MGP_AJ_P0052147 Tectb protein_coding protein_coding MGP_AJ_T0052148.1 MGP_AJ_G0025231.1 mouse_genomes_project 19 52728304 52733419 + MGP_AJ_P0052148 Tectb protein_coding protein_coding MGP_AJ_T0052149.1 MGP_AJ_G0025231.1 mouse_genomes_project 19 52728356 52729051 + Tectb protein_coding retained_intron MGP_AJ_T0052150.1 MGP_AJ_G0025231.1 mouse_genomes_project 19 52730759 52735029 + Tectb protein_coding processed_transcript MGP_AJ_T0052141.1 MGP_AJ_G0025227.1 mouse_genomes_project 19 51446937 51461768 - MGP_AJ_P0052141 Bbip1 protein_coding protein_coding MGP_AJ_T0051945.1 MGP_AJ_G0025165.1 mouse_genomes_project 19 42953624 42961828 - MGP_AJ_P0051945 Poll protein_coding protein_coding MGP_AJ_T0051383.1 MGP_AJ_G0024961.1 mouse_genomes_project 19 20171886 20240749 - MGP_AJ_P0051383 Smc5 protein_coding protein_coding MGP_AJ_T0051384.1 MGP_AJ_G0024961.1 mouse_genomes_project 19 20171896 20180599 - MGP_AJ_P0051384 Smc5 protein_coding unknown_likely_coding MGP_AJ_T0051491.1 MGP_AJ_G0024999.1 mouse_genomes_project 19 26420252 26441355 + MGP_AJ_P0051491 Cd274 protein_coding protein_coding MGP_AJ_T0052213.1 MGP_AJ_G0025246.1 mouse_genomes_project 19 54425026 54462538 + MGP_AJ_P0052213 Vwa2 protein_coding protein_coding MGP_AJ_T0052268.1 MGP_AJ_G0025261.1 mouse_genomes_project 19 56760616 56764486 - MGP_AJ_P0052268 Vax1 protein_coding protein_coding MGP_AJ_T0052269.1 MGP_AJ_G0025261.1 mouse_genomes_project 19 56761027 56761410 - Vax1 protein_coding processed_transcript MGP_AJ_T0052273.1 MGP_AJ_G0025265.1 mouse_genomes_project 19 57054606 57061544 + MGP_AJ_P0052273 Emx2 protein_coding protein_coding MGP_AJ_T0052274.1 MGP_AJ_G0025265.1 mouse_genomes_project 19 57055754 57061540 + MGP_AJ_P0052274 Emx2 protein_coding protein_coding MGP_AJ_T0052275.1 MGP_AJ_G0025265.1 mouse_genomes_project 19 57058997 57060387 + Emx2 protein_coding processed_transcript MGP_AJ_T0051477.1 MGP_AJ_G0024994.1 mouse_genomes_project 19 26149592 26192051 + MGP_AJ_P0051477 Rcl1 protein_coding protein_coding MGP_AJ_T0052270.1 MGP_AJ_G0025262.1 mouse_genomes_project 19 56817120 56831775 + MGP_AJ_P0052270 Kcnk18 protein_coding protein_coding MGP_AJ_T0011471.1 MGP_AJ_G0009593.1 mouse_genomes_project 19 2685928 2686080 - Gm27533 misc_RNA misc_RNA MGP_AJ_T0051053.1 MGP_AJ_G0024803.1 mouse_genomes_project 19 6806363 6841554 + MGP_AJ_P0051053 Rab3il1 protein_coding protein_coding MGP_AJ_T0051054.1 MGP_AJ_G0024803.1 mouse_genomes_project 19 6820109 6833544 + MGP_AJ_P0051054 Rab3il1 protein_coding protein_coding MGP_AJ_T0051055.1 MGP_AJ_G0024803.1 mouse_genomes_project 19 6820137 6833445 + MGP_AJ_P0051055 Rab3il1 protein_coding protein_coding MGP_AJ_T0051056.1 MGP_AJ_G0024803.1 mouse_genomes_project 19 6823286 6841424 + MGP_AJ_P0051056 Rab3il1 protein_coding protein_coding MGP_AJ_T0051057.1 MGP_AJ_G0024803.1 mouse_genomes_project 19 6823287 6844348 + MGP_AJ_P0051057 Rab3il1 protein_coding nonsense_mediated_decay MGP_AJ_T0051058.1 MGP_AJ_G0024803.1 mouse_genomes_project 19 6823287 6841423 + MGP_AJ_P0051058 Rab3il1 protein_coding protein_coding MGP_AJ_T0051059.1 MGP_AJ_G0024803.1 mouse_genomes_project 19 6823358 6834276 + MGP_AJ_P0051059 Rab3il1 protein_coding protein_coding MGP_AJ_T0051060.1 MGP_AJ_G0024803.1 mouse_genomes_project 19 6837637 6839778 + Rab3il1 protein_coding retained_intron MGP_AJ_T0050537.1 MGP_AJ_G0024669.1 mouse_genomes_project 19 2223048 2227399 - MGP_AJ_P0050537 Tsga10ip protein_coding protein_coding MGP_AJ_T0003855.1 MGP_AJ_G0003449.1 mouse_genomes_project 19 3410935 3412064 - Gm14967 antisense antisense MGP_AJ_T0051288.1 MGP_AJ_G0024917.1 mouse_genomes_project 19 10436163 10437592 + MGP_AJ_P0051288 protein_coding protein_coding MGP_AJ_T0052068.1 MGP_AJ_G0025205.1 mouse_genomes_project 19 44700490 44907820 - MGP_AJ_P0052068 Sh3pxd2a protein_coding protein_coding MGP_AJ_T0052069.1 MGP_AJ_G0025205.1 mouse_genomes_project 19 44700490 44907820 - MGP_AJ_P0052069 Sh3pxd2a protein_coding protein_coding MGP_AJ_T0011476.1 MGP_AJ_G0009598.1 mouse_genomes_project 19 13994608 13994869 - Gm27796 misc_RNA misc_RNA MGP_AJ_T0007091.1 MGP_AJ_G0005818.1 mouse_genomes_project 19 31605963 31607774 + Gm26902 lincRNA lincRNA MGP_AJ_T0007092.1 MGP_AJ_G0005818.1 mouse_genomes_project 19 31605988 31612665 + Gm26902 lincRNA lincRNA MGP_AJ_T0051143.1 MGP_AJ_G0024835.1 mouse_genomes_project 19 7814801 7835677 - MGP_AJ_P0051143 Ms4a18 protein_coding protein_coding MGP_AJ_T0051656.1 MGP_AJ_G0025057.1 mouse_genomes_project 19 34651051 34655974 + MGP_AJ_P0051656 Hhex protein_coding protein_coding MGP_AJ_T0051557.1 MGP_AJ_G0025017.1 mouse_genomes_project 19 29569280 29601240 + MGP_AJ_P0051557 Minpp1 protein_coding protein_coding MGP_AJ_T0051064.1 MGP_AJ_G0024807.1 mouse_genomes_project 19 7006013 7010920 - MGP_AJ_P0051064 Fen1 protein_coding protein_coding MGP_AJ_T0051065.1 MGP_AJ_G0024807.1 mouse_genomes_project 19 7006019 7010693 - MGP_AJ_P0051065 Fen1 protein_coding protein_coding MGP_AJ_T0051066.1 MGP_AJ_G0024807.1 mouse_genomes_project 19 7006019 7010819 - MGP_AJ_P0051066 Fen1 protein_coding protein_coding MGP_AJ_T0051067.1 MGP_AJ_G0024807.1 mouse_genomes_project 19 7006023 7010644 - MGP_AJ_P0051067 Fen1 protein_coding protein_coding MGP_AJ_T0052080.1 MGP_AJ_G0025207.1 mouse_genomes_project 19 45028722 45084658 + MGP_AJ_P0052080 Slk protein_coding protein_coding MGP_AJ_T0052081.1 MGP_AJ_G0025207.1 mouse_genomes_project 19 45029063 45081867 + MGP_AJ_P0052081 Slk protein_coding protein_coding MGP_AJ_T0052082.1 MGP_AJ_G0025207.1 mouse_genomes_project 19 45060776 45065437 + Slk protein_coding retained_intron MGP_AJ_T0052083.1 MGP_AJ_G0025207.1 mouse_genomes_project 19 45062764 45065937 + Slk protein_coding retained_intron MGP_AJ_T0052084.1 MGP_AJ_G0025207.1 mouse_genomes_project 19 45074541 45075866 + Slk protein_coding retained_intron MGP_AJ_T0050367.1 MGP_AJ_G0024612.1 mouse_genomes_project 19 901993 915962 + MGP_AJ_P0050367 Pitpnm1 protein_coding protein_coding MGP_AJ_T0050368.1 MGP_AJ_G0024612.1 mouse_genomes_project 19 902041 915962 + Pitpnm1 protein_coding retained_intron MGP_AJ_T0050369.1 MGP_AJ_G0024612.1 mouse_genomes_project 19 902264 906927 + MGP_AJ_P0050369 Pitpnm1 protein_coding protein_coding MGP_AJ_T0050370.1 MGP_AJ_G0024612.1 mouse_genomes_project 19 902617 915962 + MGP_AJ_P0050370 Pitpnm1 protein_coding protein_coding MGP_AJ_T0050371.1 MGP_AJ_G0024612.1 mouse_genomes_project 19 910200 911904 + Pitpnm1 protein_coding retained_intron MGP_AJ_T0050372.1 MGP_AJ_G0024612.1 mouse_genomes_project 19 910748 914214 + Pitpnm1 protein_coding processed_transcript MGP_AJ_T0050373.1 MGP_AJ_G0024612.1 mouse_genomes_project 19 911644 912731 + Pitpnm1 protein_coding retained_intron MGP_AJ_T0050374.1 MGP_AJ_G0024612.1 mouse_genomes_project 19 912796 914021 + Pitpnm1 protein_coding retained_intron MGP_AJ_T0050375.1 MGP_AJ_G0024612.1 mouse_genomes_project 19 913157 914368 + Pitpnm1 protein_coding retained_intron MGP_AJ_T0050376.1 MGP_AJ_G0024612.1 mouse_genomes_project 19 913925 915612 + Pitpnm1 protein_coding retained_intron MGP_AJ_T0050377.1 MGP_AJ_G0024612.1 mouse_genomes_project 19 914316 915962 + Pitpnm1 protein_coding retained_intron MGP_AJ_T0051068.1 MGP_AJ_G0024808.1 mouse_genomes_project 19 7010763 7014577 + Tmem258 protein_coding processed_transcript MGP_AJ_T0051069.1 MGP_AJ_G0024808.1 mouse_genomes_project 19 7010763 7014577 + MGP_AJ_P0051069 Tmem258 protein_coding protein_coding MGP_AJ_T0051070.1 MGP_AJ_G0024808.1 mouse_genomes_project 19 7010968 7014571 + Tmem258 protein_coding retained_intron MGP_AJ_T0051071.1 MGP_AJ_G0024808.1 mouse_genomes_project 19 7012783 7014577 + MGP_AJ_P0051071 Tmem258 protein_coding protein_coding MGP_AJ_T0051155.1 MGP_AJ_G0024841.1 mouse_genomes_project 19 8068388 8085691 - MGP_AJ_P0051155 Ms4a1 protein_coding protein_coding MGP_AJ_T0051156.1 MGP_AJ_G0024841.1 mouse_genomes_project 19 8069573 8073404 - Ms4a1 protein_coding retained_intron MGP_AJ_T0051157.1 MGP_AJ_G0024841.1 mouse_genomes_project 19 8070373 8085598 - MGP_AJ_P0051157 Ms4a1 protein_coding unknown_likely_coding MGP_AJ_T0051158.1 MGP_AJ_G0024841.1 mouse_genomes_project 19 8072709 8085595 - Ms4a1 protein_coding retained_intron MGP_AJ_T0050407.1 MGP_AJ_G0024621.1 mouse_genomes_project 19 993942 997207 + MGP_AJ_P0050407 Ppp1ca protein_coding protein_coding MGP_AJ_T0051292.1 MGP_AJ_G0024921.1 mouse_genomes_project 19 10608928 10609888 + MGP_AJ_P0051292 Olfr1491 protein_coding protein_coding MGP_AJ_T0007083.1 MGP_AJ_G0005813.1 mouse_genomes_project 19 25125761 25126666 + Gm28228 lincRNA lincRNA MGP_AJ_T0051776.1 MGP_AJ_G0025107.1 mouse_genomes_project 19 39232892 39239715 + MGP_AJ_P0051776 Pgam1 protein_coding protein_coding MGP_AJ_T0007117.1 MGP_AJ_G0005836.1 mouse_genomes_project 19 50961815 50963905 + 4833407H14Rik lincRNA lincRNA MGP_AJ_T0050810.1 MGP_AJ_G0024730.1 mouse_genomes_project 19 3285381 3400382 + MGP_AJ_P0050810 Nrxn2 protein_coding protein_coding MGP_AJ_T0050811.1 MGP_AJ_G0024730.1 mouse_genomes_project 19 3285388 3333079 + Nrxn2 protein_coding retained_intron MGP_AJ_T0050812.1 MGP_AJ_G0024730.1 mouse_genomes_project 19 3285388 3400381 + MGP_AJ_P0050812 Nrxn2 protein_coding protein_coding MGP_AJ_T0050813.1 MGP_AJ_G0024730.1 mouse_genomes_project 19 3285415 3399443 + MGP_AJ_P0050813 Nrxn2 protein_coding protein_coding MGP_AJ_T0050814.1 MGP_AJ_G0024730.1 mouse_genomes_project 19 3294427 3400382 + MGP_AJ_P0050814 Nrxn2 protein_coding protein_coding MGP_AJ_T0050815.1 MGP_AJ_G0024730.1 mouse_genomes_project 19 3295136 3338709 + MGP_AJ_P0050815 Nrxn2 protein_coding protein_coding MGP_AJ_T0050816.1 MGP_AJ_G0024730.1 mouse_genomes_project 19 3295257 3339668 + MGP_AJ_P0050816 Nrxn2 protein_coding protein_coding MGP_AJ_T0050817.1 MGP_AJ_G0024730.1 mouse_genomes_project 19 3311916 3339682 + Nrxn2 protein_coding processed_transcript MGP_AJ_T0050818.1 MGP_AJ_G0024730.1 mouse_genomes_project 19 3312754 3339780 + Nrxn2 protein_coding processed_transcript MGP_AJ_T0050819.1 MGP_AJ_G0024730.1 mouse_genomes_project 19 3320894 3348996 + Nrxn2 protein_coding retained_intron MGP_AJ_T0050820.1 MGP_AJ_G0024730.1 mouse_genomes_project 19 3339437 3348995 + Nrxn2 protein_coding retained_intron MGP_AJ_T0050821.1 MGP_AJ_G0024730.1 mouse_genomes_project 19 3365202 3377030 + Nrxn2 protein_coding processed_transcript MGP_AJ_T0050822.1 MGP_AJ_G0024730.1 mouse_genomes_project 19 3365359 3400382 + MGP_AJ_P0050822 Nrxn2 protein_coding protein_coding MGP_AJ_T0050823.1 MGP_AJ_G0024730.1 mouse_genomes_project 19 3365366 3411334 + MGP_AJ_P0050823 Nrxn2 protein_coding protein_coding MGP_AJ_T0050824.1 MGP_AJ_G0024730.1 mouse_genomes_project 19 3384369 3399461 + Nrxn2 protein_coding processed_transcript MGP_AJ_T0007102.1 MGP_AJ_G0005827.1 mouse_genomes_project 19 42694027 42704403 - Gm29595 lincRNA lincRNA MGP_AJ_T0007103.1 MGP_AJ_G0005827.1 mouse_genomes_project 19 42694036 42696600 - Gm29595 lincRNA lincRNA MGP_AJ_T0050733.1 MGP_AJ_G0024725.1 mouse_genomes_project 19 3200286 3206188 + MGP_AJ_P0050733 Men1 protein_coding protein_coding MGP_AJ_T0050734.1 MGP_AJ_G0024725.1 mouse_genomes_project 19 3200286 3206199 + MGP_AJ_P0050734 Men1 protein_coding protein_coding MGP_AJ_T0050735.1 MGP_AJ_G0024725.1 mouse_genomes_project 19 3200320 3206197 + MGP_AJ_P0050735 Men1 protein_coding protein_coding MGP_AJ_T0050736.1 MGP_AJ_G0024725.1 mouse_genomes_project 19 3200346 3206197 + MGP_AJ_P0050736 Men1 protein_coding protein_coding MGP_AJ_T0050737.1 MGP_AJ_G0024725.1 mouse_genomes_project 19 3200346 3206197 + MGP_AJ_P0050737 Men1 protein_coding protein_coding MGP_AJ_T0050738.1 MGP_AJ_G0024725.1 mouse_genomes_project 19 3200353 3206199 + Men1 protein_coding retained_intron MGP_AJ_T0050739.1 MGP_AJ_G0024725.1 mouse_genomes_project 19 3200354 3206091 + MGP_AJ_P0050739 Men1 protein_coding protein_coding MGP_AJ_T0050740.1 MGP_AJ_G0024725.1 mouse_genomes_project 19 3200371 3205771 + MGP_AJ_P0050740 Men1 protein_coding protein_coding MGP_AJ_T0050741.1 MGP_AJ_G0024725.1 mouse_genomes_project 19 3200418 3206197 + MGP_AJ_P0050741 Men1 protein_coding protein_coding MGP_AJ_T0050742.1 MGP_AJ_G0024725.1 mouse_genomes_project 19 3200768 3205480 + MGP_AJ_P0050742 Men1 protein_coding protein_coding MGP_AJ_T0050743.1 MGP_AJ_G0024725.1 mouse_genomes_project 19 3202217 3203716 + MGP_AJ_P0050743 Men1 protein_coding protein_coding MGP_AJ_T0050744.1 MGP_AJ_G0024725.1 mouse_genomes_project 19 3205154 3206120 + MGP_AJ_P0050744 Men1 protein_coding nonsense_mediated_decay MGP_AJ_T0001013.1 MGP_AJ_G0000944.1 mouse_genomes_project 19 1579545 1582614 - TEC TEC MGP_AJ_T0051532.1 MGP_AJ_G0025012.1 mouse_genomes_project 19 27657478 28861829 - MGP_AJ_P0051532 Prkg1 protein_coding protein_coding MGP_AJ_T0051533.1 MGP_AJ_G0025012.1 mouse_genomes_project 19 27658474 28763061 - MGP_AJ_P0051533 Prkg1 protein_coding protein_coding MGP_AJ_T0051534.1 MGP_AJ_G0025012.1 mouse_genomes_project 19 27658888 27664083 - Prkg1 protein_coding processed_transcript MGP_AJ_T0051535.1 MGP_AJ_G0025012.1 mouse_genomes_project 19 27658890 27664083 - Prkg1 protein_coding processed_transcript MGP_AJ_T0051536.1 MGP_AJ_G0025012.1 mouse_genomes_project 19 27709107 27715228 - Prkg1 protein_coding processed_transcript MGP_AJ_T0051537.1 MGP_AJ_G0025012.1 mouse_genomes_project 19 27795513 27863663 - Prkg1 protein_coding retained_intron MGP_AJ_T0051539.1 MGP_AJ_G0025012.1 mouse_genomes_project 19 28838437 28861769 - MGP_AJ_P0051539 Prkg1 protein_coding protein_coding MGP_AJ_T0051268.1 MGP_AJ_G0024897.1 mouse_genomes_project 19 9783184 9784132 + MGP_AJ_P0051268 Olfr1449 protein_coding protein_coding MGP_AJ_T0007084.1 MGP_AJ_G0005814.1 mouse_genomes_project 19 25717459 25759625 + D930032P07Rik lincRNA lincRNA MGP_AJ_T0007085.1 MGP_AJ_G0005814.1 mouse_genomes_project 19 25717463 25759350 + D930032P07Rik lincRNA lincRNA MGP_AJ_T0001014.1 MGP_AJ_G0000945.1 mouse_genomes_project 19 2644028 2644481 + TEC TEC MGP_AJ_T0102450.1 MGP_AJ_G0040192.1 mouse_genomes_project 19 6308550 6318348 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0051751.1 MGP_AJ_G0025094.1 mouse_genomes_project 19 38234384 38298007 - MGP_AJ_P0051751 Blnk protein_coding protein_coding MGP_AJ_T0051752.1 MGP_AJ_G0025094.1 mouse_genomes_project 19 38234384 38297620 - MGP_AJ_P0051752 Blnk protein_coding protein_coding MGP_AJ_T0051753.1 MGP_AJ_G0025094.1 mouse_genomes_project 19 38268140 38298007 - Blnk protein_coding retained_intron MGP_AJ_T0050548.1 MGP_AJ_G0024673.1 mouse_genomes_project 19 2291436 2292045 - MGP_AJ_P0050548 Ccdc85b protein_coding protein_coding MGP_AJ_T0051658.1 MGP_AJ_G0025059.1 mouse_genomes_project 19 34903951 34912030 + MGP_AJ_P0051658 Cyp26c1 protein_coding protein_coding MGP_AJ_T0050911.1 MGP_AJ_G0024760.1 mouse_genomes_project 19 4272197 4330884 + MGP_AJ_P0050911 Atl3 protein_coding protein_coding MGP_AJ_T0050912.1 MGP_AJ_G0024760.1 mouse_genomes_project 19 4272595 4330884 + MGP_AJ_P0050912 Atl3 protein_coding protein_coding MGP_AJ_T0051414.1 MGP_AJ_G0024980.1 mouse_genomes_project 19 22619941 22633309 + MGP_AJ_P0051414 Dmrt3 protein_coding protein_coding MGP_AJ_T0100995.1 MGP_AJ_G0038961.1 mouse_genomes_project 19 21917334 21917466 - Gm23658 snoRNA snoRNA MGP_AJ_T0051287.1 MGP_AJ_G0024916.1 mouse_genomes_project 19 10434467 10437592 + MGP_AJ_P0051287 protein_coding protein_coding MGP_AJ_T0011477.1 MGP_AJ_G0009599.1 mouse_genomes_project 19 15723775 15723991 - Gm24190 misc_RNA misc_RNA MGP_AJ_T0052066.1 MGP_AJ_G0025204.1 mouse_genomes_project 19 44615161 44699752 + MGP_AJ_P0052066 Neurl1a protein_coding protein_coding MGP_AJ_T0052067.1 MGP_AJ_G0025204.1 mouse_genomes_project 19 44669092 44699752 + MGP_AJ_P0052067 Neurl1a protein_coding protein_coding MGP_AJ_T0050517.1 MGP_AJ_G0024658.1 mouse_genomes_project 19 1918538 1925871 - MGP_AJ_P0050517 Cnih2 protein_coding protein_coding MGP_AJ_T0101000.1 MGP_AJ_G0038966.1 mouse_genomes_project 19 35291013 35291138 + Gm23300 snoRNA snoRNA MGP_AJ_T0051270.1 MGP_AJ_G0024899.1 mouse_genomes_project 19 9852388 9853321 + MGP_AJ_P0051270 Olfr1451 protein_coding protein_coding MGP_AJ_T0051900.1 MGP_AJ_G0025146.1 mouse_genomes_project 19 41712720 41714352 + Scd4 protein_coding retained_intron MGP_AJ_T0051901.1 MGP_AJ_G0025146.1 mouse_genomes_project 19 41712720 41726183 + MGP_AJ_P0051901 Scd4 protein_coding protein_coding MGP_AJ_T0051719.1 MGP_AJ_G0025088.1 mouse_genomes_project 19 37569756 37676630 - MGP_AJ_P0051719 Sorbs1 protein_coding protein_coding MGP_AJ_T0051720.1 MGP_AJ_G0025088.1 mouse_genomes_project 19 37569756 37676630 - MGP_AJ_P0051720 Sorbs1 protein_coding protein_coding MGP_AJ_T0051721.1 MGP_AJ_G0025088.1 mouse_genomes_project 19 37569756 37676630 - MGP_AJ_P0051721 Sorbs1 protein_coding protein_coding MGP_AJ_T0051722.1 MGP_AJ_G0025088.1 mouse_genomes_project 19 37569756 37676630 - MGP_AJ_P0051722 Sorbs1 protein_coding protein_coding MGP_AJ_T0051723.1 MGP_AJ_G0025088.1 mouse_genomes_project 19 37584192 37676630 - MGP_AJ_P0051723 Sorbs1 protein_coding unknown_likely_coding MGP_AJ_T0050671.1 MGP_AJ_G0024709.1 mouse_genomes_project 19 2926739 2939236 - MGP_AJ_P0050671 Vps51 protein_coding protein_coding MGP_AJ_T0050672.1 MGP_AJ_G0024709.1 mouse_genomes_project 19 2926887 2928217 - Vps51 protein_coding retained_intron MGP_AJ_T0050673.1 MGP_AJ_G0024709.1 mouse_genomes_project 19 2926891 2936123 - MGP_AJ_P0050673 Vps51 protein_coding protein_coding MGP_AJ_T0050674.1 MGP_AJ_G0024709.1 mouse_genomes_project 19 2926948 2928048 - Vps51 protein_coding retained_intron MGP_AJ_T0050675.1 MGP_AJ_G0024709.1 mouse_genomes_project 19 2927114 2927969 - MGP_AJ_P0050675 Vps51 protein_coding protein_coding MGP_AJ_T0050676.1 MGP_AJ_G0024709.1 mouse_genomes_project 19 2927646 2928511 - Vps51 protein_coding retained_intron MGP_AJ_T0050677.1 MGP_AJ_G0024709.1 mouse_genomes_project 19 2927765 2928596 - Vps51 protein_coding retained_intron MGP_AJ_T0050678.1 MGP_AJ_G0024709.1 mouse_genomes_project 19 2928978 2936129 - Vps51 protein_coding retained_intron MGP_AJ_T0050679.1 MGP_AJ_G0024709.1 mouse_genomes_project 19 2930314 2935794 - Vps51 protein_coding retained_intron MGP_AJ_T0050680.1 MGP_AJ_G0024709.1 mouse_genomes_project 19 2930379 2936124 - MGP_AJ_P0050680 Vps51 protein_coding nonsense_mediated_decay MGP_AJ_T0050681.1 MGP_AJ_G0024709.1 mouse_genomes_project 19 2934828 2936126 - MGP_AJ_P0050681 Vps51 protein_coding protein_coding MGP_AJ_T0051095.1 MGP_AJ_G0024817.1 mouse_genomes_project 19 7378941 7385809 - MGP_AJ_P0051095 Tmem138 protein_coding protein_coding MGP_AJ_T0051024.1 MGP_AJ_G0024789.1 mouse_genomes_project 19 5850345 5868908 + MGP_AJ_P0051024 Ganab protein_coding protein_coding MGP_AJ_T0051025.1 MGP_AJ_G0024789.1 mouse_genomes_project 19 5850377 5868914 + MGP_AJ_P0051025 Ganab protein_coding unknown_likely_coding MGP_AJ_T0051223.1 MGP_AJ_G0024867.1 mouse_genomes_project 19 8919121 8920054 - MGP_AJ_P0051223 Olfr1423 protein_coding protein_coding MGP_AJ_T0051763.1 MGP_AJ_G0025101.1 mouse_genomes_project 19 38890034 38894201 + MGP_AJ_P0051763 Gm340 protein_coding protein_coding MGP_AJ_T0010282.1 MGP_AJ_G0008404.1 mouse_genomes_project 19 2908041 2908100 + Mir6988 miRNA miRNA MGP_AJ_T0051926.1 MGP_AJ_G0025156.1 mouse_genomes_project 19 42402885 42404314 - MGP_AJ_P0051926 Mrpl43 protein_coding protein_coding MGP_AJ_T0100986.1 MGP_AJ_G0038952.1 mouse_genomes_project 19 5677561 5677687 + Snord22 snoRNA snoRNA MGP_AJ_T0051530.1 MGP_AJ_G0025010.1 mouse_genomes_project 19 27311135 27318459 + MGP_AJ_P0051530 Mbl2 protein_coding protein_coding MGP_AJ_T0052155.1 MGP_AJ_G0025235.1 mouse_genomes_project 19 52856650 53166151 + MGP_AJ_P0052155 Vti1a protein_coding protein_coding MGP_AJ_T0051213.1 MGP_AJ_G0024859.1 mouse_genomes_project 19 8647655 8652192 + MGP_AJ_P0051213 Mrpl16 protein_coding protein_coding MGP_AJ_T0050299.1 MGP_AJ_G0024597.1 mouse_genomes_project 19 626317 669153 + MGP_AJ_P0050299 Chka protein_coding nonsense_mediated_decay MGP_AJ_T0050300.1 MGP_AJ_G0024597.1 mouse_genomes_project 19 626341 669157 + MGP_AJ_P0050300 Chka protein_coding protein_coding MGP_AJ_T0050301.1 MGP_AJ_G0024597.1 mouse_genomes_project 19 626354 646694 + Chka protein_coding retained_intron MGP_AJ_T0050302.1 MGP_AJ_G0024597.1 mouse_genomes_project 19 626354 669155 + Chka protein_coding retained_intron MGP_AJ_T0050303.1 MGP_AJ_G0024597.1 mouse_genomes_project 19 626376 642455 + Chka protein_coding retained_intron MGP_AJ_T0050304.1 MGP_AJ_G0024597.1 mouse_genomes_project 19 626376 653395 + Chka protein_coding retained_intron MGP_AJ_T0050305.1 MGP_AJ_G0024597.1 mouse_genomes_project 19 626620 669152 + MGP_AJ_P0050305 Chka protein_coding protein_coding MGP_AJ_T0050306.1 MGP_AJ_G0024597.1 mouse_genomes_project 19 626645 660653 + MGP_AJ_P0050306 Chka protein_coding nonsense_mediated_decay MGP_AJ_T0050307.1 MGP_AJ_G0024597.1 mouse_genomes_project 19 626907 662239 + MGP_AJ_P0050307 Chka protein_coding protein_coding MGP_AJ_T0050308.1 MGP_AJ_G0024597.1 mouse_genomes_project 19 649444 664722 + MGP_AJ_P0050308 Chka protein_coding nonsense_mediated_decay MGP_AJ_T0050309.1 MGP_AJ_G0024597.1 mouse_genomes_project 19 650145 659374 + Chka protein_coding processed_transcript MGP_AJ_T0050310.1 MGP_AJ_G0024597.1 mouse_genomes_project 19 650159 659327 + Chka protein_coding retained_intron MGP_AJ_T0050311.1 MGP_AJ_G0024597.1 mouse_genomes_project 19 650185 661205 + Chka protein_coding processed_transcript MGP_AJ_T0050312.1 MGP_AJ_G0024597.1 mouse_genomes_project 19 666518 668445 + Chka protein_coding retained_intron MGP_AJ_T0051931.1 MGP_AJ_G0025159.1 mouse_genomes_project 19 42425421 42428531 - Pdzd7 protein_coding processed_transcript MGP_AJ_T0051932.1 MGP_AJ_G0025159.1 mouse_genomes_project 19 42425422 42445093 - MGP_AJ_P0051932 Pdzd7 protein_coding protein_coding MGP_AJ_T0051933.1 MGP_AJ_G0025159.1 mouse_genomes_project 19 42425422 42444251 - MGP_AJ_P0051933 Pdzd7 protein_coding protein_coding MGP_AJ_T0052019.1 MGP_AJ_G0025180.1 mouse_genomes_project 19 43728822 43734588 - MGP_AJ_P0052019 Psd protein_coding unknown_likely_coding MGP_AJ_T0052020.1 MGP_AJ_G0025180.1 mouse_genomes_project 19 43728829 43743896 - MGP_AJ_P0052020 Psd protein_coding protein_coding MGP_AJ_T0052021.1 MGP_AJ_G0025180.1 mouse_genomes_project 19 43728829 43743896 - MGP_AJ_P0052021 Psd protein_coding protein_coding MGP_AJ_T0010321.1 MGP_AJ_G0008443.1 mouse_genomes_project 19 47617829 47617954 + Gm27749 miRNA miRNA MGP_AJ_T0013394.1 MGP_AJ_G0011489.1 mouse_genomes_project 19 37891558 37892316 + processed_pseudogene processed_pseudogene MGP_AJ_T0052064.1 MGP_AJ_G0025202.1 mouse_genomes_project 19 44587449 44593352 - MGP_AJ_P0052064 Calhm3 protein_coding protein_coding MGP_AJ_T0050907.1 MGP_AJ_G0024759.1 mouse_genomes_project 19 4200764 4261479 - MGP_AJ_P0050907 Rtn3 protein_coding protein_coding MGP_AJ_T0050908.1 MGP_AJ_G0024759.1 mouse_genomes_project 19 4200764 4261479 - MGP_AJ_P0050908 Rtn3 protein_coding protein_coding MGP_AJ_T0050909.1 MGP_AJ_G0024759.1 mouse_genomes_project 19 4200764 4261471 - MGP_AJ_P0050909 Rtn3 protein_coding protein_coding MGP_AJ_T0050910.1 MGP_AJ_G0024759.1 mouse_genomes_project 19 4201891 4261409 - MGP_AJ_P0050910 Rtn3 protein_coding protein_coding MGP_AJ_T0050881.1 MGP_AJ_G0024756.1 mouse_genomes_project 19 4049019 4115202 - MGP_AJ_P0050881 Mark2 protein_coding protein_coding MGP_AJ_T0050882.1 MGP_AJ_G0024756.1 mouse_genomes_project 19 4049022 4115800 - MGP_AJ_P0050882 Mark2 protein_coding protein_coding MGP_AJ_T0050883.1 MGP_AJ_G0024756.1 mouse_genomes_project 19 4050359 4115780 - MGP_AJ_P0050883 Mark2 protein_coding protein_coding MGP_AJ_T0050884.1 MGP_AJ_G0024756.1 mouse_genomes_project 19 4050385 4115173 - MGP_AJ_P0050884 Mark2 protein_coding protein_coding MGP_AJ_T0050885.1 MGP_AJ_G0024756.1 mouse_genomes_project 19 4050475 4115785 - MGP_AJ_P0050885 Mark2 protein_coding protein_coding MGP_AJ_T0050886.1 MGP_AJ_G0024756.1 mouse_genomes_project 19 4050475 4056677 - MGP_AJ_P0050886 Mark2 protein_coding protein_coding MGP_AJ_T0050887.1 MGP_AJ_G0024756.1 mouse_genomes_project 19 4050478 4051721 - Mark2 protein_coding retained_intron MGP_AJ_T0050888.1 MGP_AJ_G0024756.1 mouse_genomes_project 19 4050716 4115202 - MGP_AJ_P0050888 Mark2 protein_coding protein_coding MGP_AJ_T0050889.1 MGP_AJ_G0024756.1 mouse_genomes_project 19 4050906 4056692 - MGP_AJ_P0050889 Mark2 protein_coding protein_coding MGP_AJ_T0050890.1 MGP_AJ_G0024756.1 mouse_genomes_project 19 4051071 4056805 - MGP_AJ_P0050890 Mark2 protein_coding protein_coding MGP_AJ_T0050891.1 MGP_AJ_G0024756.1 mouse_genomes_project 19 4052128 4057144 - MGP_AJ_P0050891 Mark2 protein_coding protein_coding MGP_AJ_T0050892.1 MGP_AJ_G0024756.1 mouse_genomes_project 19 4052786 4055568 - MGP_AJ_P0050892 Mark2 protein_coding protein_coding MGP_AJ_T0050893.1 MGP_AJ_G0024756.1 mouse_genomes_project 19 4054663 4056737 - MGP_AJ_P0050893 Mark2 protein_coding nonsense_mediated_decay MGP_AJ_T0050894.1 MGP_AJ_G0024756.1 mouse_genomes_project 19 4056763 4058405 - Mark2 protein_coding retained_intron MGP_AJ_T0050895.1 MGP_AJ_G0024756.1 mouse_genomes_project 19 4058383 4060990 - Mark2 protein_coding retained_intron MGP_AJ_T0050896.1 MGP_AJ_G0024756.1 mouse_genomes_project 19 4059446 4115841 - MGP_AJ_P0050896 Mark2 protein_coding protein_coding MGP_AJ_T0050897.1 MGP_AJ_G0024756.1 mouse_genomes_project 19 4060963 4115585 - MGP_AJ_P0050897 Mark2 protein_coding protein_coding MGP_AJ_T0050898.1 MGP_AJ_G0024756.1 mouse_genomes_project 19 4063960 4115623 - MGP_AJ_P0050898 Mark2 protein_coding protein_coding MGP_AJ_T0050899.1 MGP_AJ_G0024756.1 mouse_genomes_project 19 4064289 4115793 - MGP_AJ_P0050899 Mark2 protein_coding protein_coding MGP_AJ_T0050336.1 MGP_AJ_G0024604.1 mouse_genomes_project 19 763941 767239 + MGP_AJ_P0050336 Acy3 protein_coding unknown_likely_coding MGP_AJ_T0050337.1 MGP_AJ_G0024604.1 mouse_genomes_project 19 764031 768354 + MGP_AJ_P0050337 Acy3 protein_coding protein_coding MGP_AJ_T0017708.1 MGP_AJ_G0015362.1 mouse_genomes_project 19 33809159 33901098 - 1500017E21Rik processed_transcript processed_transcript MGP_AJ_T0017709.1 MGP_AJ_G0015362.1 mouse_genomes_project 19 33814519 33885053 - 1500017E21Rik processed_transcript processed_transcript MGP_AJ_T0017710.1 MGP_AJ_G0015362.1 mouse_genomes_project 19 33814531 33821119 - 1500017E21Rik processed_transcript processed_transcript MGP_AJ_T0017711.1 MGP_AJ_G0015362.1 mouse_genomes_project 19 33814536 33821099 - 1500017E21Rik processed_transcript processed_transcript MGP_AJ_T0017712.1 MGP_AJ_G0015362.1 mouse_genomes_project 19 33839392 33854427 - 1500017E21Rik processed_transcript processed_transcript MGP_AJ_T0017713.1 MGP_AJ_G0015362.1 mouse_genomes_project 19 33841529 33884847 - 1500017E21Rik processed_transcript processed_transcript MGP_AJ_T0017714.1 MGP_AJ_G0015362.1 mouse_genomes_project 19 33854270 33884906 - 1500017E21Rik processed_transcript processed_transcript MGP_AJ_T0017715.1 MGP_AJ_G0015362.1 mouse_genomes_project 19 33854439 33884902 - 1500017E21Rik processed_transcript processed_transcript MGP_AJ_T0050866.1 MGP_AJ_G0024747.1 mouse_genomes_project 19 3759754 3762668 + MGP_AJ_P0050866 Trpt1 protein_coding protein_coding MGP_AJ_T0050699.1 MGP_AJ_G0024716.1 mouse_genomes_project 19 2982035 2990947 - MGP_AJ_P0050699 Snx15 protein_coding protein_coding MGP_AJ_T0050700.1 MGP_AJ_G0024716.1 mouse_genomes_project 19 2982488 2990790 - MGP_AJ_P0050700 Snx15 protein_coding protein_coding MGP_AJ_T0050701.1 MGP_AJ_G0024716.1 mouse_genomes_project 19 2983268 2984279 - Snx15 protein_coding retained_intron MGP_AJ_T0050702.1 MGP_AJ_G0024716.1 mouse_genomes_project 19 2983268 2990450 - Snx15 protein_coding processed_transcript MGP_AJ_T0050703.1 MGP_AJ_G0024716.1 mouse_genomes_project 19 2984128 2984924 - Snx15 protein_coding processed_transcript MGP_AJ_T0050704.1 MGP_AJ_G0024716.1 mouse_genomes_project 19 2984541 2990776 - Snx15 protein_coding retained_intron MGP_AJ_T0050705.1 MGP_AJ_G0024716.1 mouse_genomes_project 19 2984563 2990808 - MGP_AJ_P0050705 Snx15 protein_coding protein_coding MGP_AJ_T0003863.1 MGP_AJ_G0003455.1 mouse_genomes_project 19 19415149 19417392 - antisense antisense MGP_AJ_T0051242.1 MGP_AJ_G0024884.1 mouse_genomes_project 19 9430542 9457620 + MGP_AJ_P0051242 Gm4952 protein_coding protein_coding MGP_AJ_T0051243.1 MGP_AJ_G0024884.1 mouse_genomes_project 19 9430584 9458998 + MGP_AJ_P0051243 Gm4952 protein_coding protein_coding MGP_AJ_T0050328.1 MGP_AJ_G0024601.1 mouse_genomes_project 19 711144 725292 + MGP_AJ_P0050328 Unc93b1 protein_coding protein_coding MGP_AJ_T0050329.1 MGP_AJ_G0024601.1 mouse_genomes_project 19 711184 712701 + Unc93b1 protein_coding retained_intron MGP_AJ_T0050330.1 MGP_AJ_G0024601.1 mouse_genomes_project 19 711215 725295 + MGP_AJ_P0050330 Unc93b1 protein_coding protein_coding MGP_AJ_T0050331.1 MGP_AJ_G0024601.1 mouse_genomes_project 19 718391 725292 + Unc93b1 protein_coding retained_intron MGP_AJ_T0013402.1 MGP_AJ_G0011497.1 mouse_genomes_project 19 58420366 58420733 - processed_pseudogene processed_pseudogene MGP_AJ_T0051416.1 MGP_AJ_G0024982.1 mouse_genomes_project 19 23616862 23796311 + MGP_AJ_P0051416 Smarca2 protein_coding protein_coding MGP_AJ_T0051417.1 MGP_AJ_G0024982.1 mouse_genomes_project 19 23616866 23796265 + MGP_AJ_P0051417 Smarca2 protein_coding protein_coding MGP_AJ_T0051418.1 MGP_AJ_G0024982.1 mouse_genomes_project 19 23635203 23643030 + MGP_AJ_P0051418 Smarca2 protein_coding protein_coding MGP_AJ_T0051419.1 MGP_AJ_G0024982.1 mouse_genomes_project 19 23683680 23691477 + Smarca2 protein_coding retained_intron MGP_AJ_T0051420.1 MGP_AJ_G0024982.1 mouse_genomes_project 19 23693903 23769903 + Smarca2 protein_coding processed_transcript MGP_AJ_T0051421.1 MGP_AJ_G0024982.1 mouse_genomes_project 19 23732840 23789743 + Smarca2 protein_coding retained_intron MGP_AJ_T0051422.1 MGP_AJ_G0024982.1 mouse_genomes_project 19 23738686 23769943 + Smarca2 protein_coding processed_transcript MGP_AJ_T0051423.1 MGP_AJ_G0024982.1 mouse_genomes_project 19 23765907 23795466 + MGP_AJ_P0051423 Smarca2 protein_coding protein_coding MGP_AJ_T0051424.1 MGP_AJ_G0024982.1 mouse_genomes_project 19 23766061 23795360 + MGP_AJ_P0051424 Smarca2 protein_coding protein_coding MGP_AJ_T0051425.1 MGP_AJ_G0024982.1 mouse_genomes_project 19 23766096 23794232 + MGP_AJ_P0051425 Smarca2 protein_coding protein_coding MGP_AJ_T0051426.1 MGP_AJ_G0024982.1 mouse_genomes_project 19 23766097 23796263 + MGP_AJ_P0051426 Smarca2 protein_coding protein_coding MGP_AJ_T0051427.1 MGP_AJ_G0024982.1 mouse_genomes_project 19 23766097 23795360 + MGP_AJ_P0051427 Smarca2 protein_coding protein_coding MGP_AJ_T0051428.1 MGP_AJ_G0024982.1 mouse_genomes_project 19 23767700 23792295 + MGP_AJ_P0051428 Smarca2 protein_coding protein_coding MGP_AJ_T0051429.1 MGP_AJ_G0024982.1 mouse_genomes_project 19 23768913 23788985 + MGP_AJ_P0051429 Smarca2 protein_coding protein_coding MGP_AJ_T0051430.1 MGP_AJ_G0024982.1 mouse_genomes_project 19 23769915 23796311 + MGP_AJ_P0051430 Smarca2 protein_coding nonsense_mediated_decay MGP_AJ_T0051431.1 MGP_AJ_G0024982.1 mouse_genomes_project 19 23771580 23795641 + MGP_AJ_P0051431 Smarca2 protein_coding protein_coding MGP_AJ_T0051432.1 MGP_AJ_G0024982.1 mouse_genomes_project 19 23788498 23795422 + MGP_AJ_P0051432 Smarca2 protein_coding protein_coding MGP_AJ_T0051100.1 MGP_AJ_G0024822.1 mouse_genomes_project 19 7484319 7499608 - MGP_AJ_P0051100 Pga5 protein_coding unknown_likely_coding MGP_AJ_T0051101.1 MGP_AJ_G0024822.1 mouse_genomes_project 19 7484323 7493185 - MGP_AJ_P0051101 Pga5 protein_coding protein_coding MGP_AJ_T0051027.1 MGP_AJ_G0024791.1 mouse_genomes_project 19 5880216 5882191 - MGP_AJ_P0051027 Rom1 protein_coding protein_coding MGP_AJ_T0017648.1 MGP_AJ_G0015347.1 mouse_genomes_project 19 572056 626964 - Gm16066 processed_transcript processed_transcript MGP_AJ_T0101004.1 MGP_AJ_G0038970.1 mouse_genomes_project 19 45154838 45154954 + Gm26085 snoRNA snoRNA MGP_AJ_T0051678.1 MGP_AJ_G0025068.1 mouse_genomes_project 19 35612915 35625436 + MGP_AJ_P0051678 Slc35g1 protein_coding protein_coding MGP_AJ_T0010317.1 MGP_AJ_G0008439.1 mouse_genomes_project 19 44713825 44713896 - Mir6995 miRNA miRNA MGP_AJ_T0050682.1 MGP_AJ_G0024710.1 mouse_genomes_project 19 2935870 2941163 - MGP_AJ_P0050682 Gm28374 protein_coding protein_coding MGP_AJ_T0051581.1 MGP_AJ_G0025032.1 mouse_genomes_project 19 31321329 31369199 + MGP_AJ_P0051581 Stambpl1 protein_coding protein_coding MGP_AJ_T0051582.1 MGP_AJ_G0025032.1 mouse_genomes_project 19 31321922 31360281 + MGP_AJ_P0051582 Stambpl1 protein_coding protein_coding MGP_AJ_T0051583.1 MGP_AJ_G0025032.1 mouse_genomes_project 19 31347050 31364720 + Stambpl1 protein_coding retained_intron MGP_AJ_T0051584.1 MGP_AJ_G0025032.1 mouse_genomes_project 19 31347237 31369197 + MGP_AJ_P0051584 Stambpl1 protein_coding protein_coding MGP_AJ_T0051585.1 MGP_AJ_G0025032.1 mouse_genomes_project 19 31361547 31363136 + Stambpl1 protein_coding processed_transcript MGP_AJ_T0051313.1 MGP_AJ_G0024935.1 mouse_genomes_project 19 13047286 13304437 + MGP_AJ_P0051313 Gnaq protein_coding protein_coding MGP_AJ_T0051314.1 MGP_AJ_G0024935.1 mouse_genomes_project 19 13047751 13233083 + Gnaq protein_coding retained_intron MGP_AJ_T0051315.1 MGP_AJ_G0024935.1 mouse_genomes_project 19 13134931 13233829 + Gnaq protein_coding processed_transcript MGP_AJ_T0007114.1 MGP_AJ_G0005835.1 mouse_genomes_project 19 50941836 50965964 - Mirt1 lincRNA lincRNA MGP_AJ_T0007115.1 MGP_AJ_G0005835.1 mouse_genomes_project 19 50944581 50947882 - Mirt1 lincRNA lincRNA MGP_AJ_T0007116.1 MGP_AJ_G0005835.1 mouse_genomes_project 19 50952811 50955265 - Mirt1 lincRNA lincRNA MGP_AJ_T0051565.1 MGP_AJ_G0025022.1 mouse_genomes_project 19 30517494 30781563 - MGP_AJ_P0051565 protein_coding protein_coding MGP_AJ_T0052065.1 MGP_AJ_G0025203.1 mouse_genomes_project 19 44606484 44607150 - MGP_AJ_P0052065 Gm6970 protein_coding protein_coding MGP_AJ_T0050829.1 MGP_AJ_G0024733.1 mouse_genomes_project 19 3602704 3617792 - MGP_AJ_P0050829 Ccdc88b protein_coding protein_coding MGP_AJ_T0050494.1 MGP_AJ_G0024646.1 mouse_genomes_project 19 1706072 1725569 - MGP_AJ_P0050494 Bbs1 protein_coding protein_coding MGP_AJ_T0051220.1 MGP_AJ_G0024864.1 mouse_genomes_project 19 8775718 8776770 + MGP_AJ_P0051220 Olfr1420 protein_coding protein_coding MGP_AJ_T0051835.1 MGP_AJ_G0025126.1 mouse_genomes_project 19 40084272 40109090 - MGP_AJ_P0051835 Hps1 protein_coding protein_coding MGP_AJ_T0051836.1 MGP_AJ_G0025126.1 mouse_genomes_project 19 40084362 40109071 - Hps1 protein_coding retained_intron MGP_AJ_T0051837.1 MGP_AJ_G0025126.1 mouse_genomes_project 19 40084362 40107758 - MGP_AJ_P0051837 Hps1 protein_coding protein_coding MGP_AJ_T0051838.1 MGP_AJ_G0025126.1 mouse_genomes_project 19 40084364 40109088 - MGP_AJ_P0051838 Hps1 protein_coding protein_coding MGP_AJ_T0051839.1 MGP_AJ_G0025126.1 mouse_genomes_project 19 40084748 40086984 - MGP_AJ_P0051839 Hps1 protein_coding nonsense_mediated_decay MGP_AJ_T0051840.1 MGP_AJ_G0025126.1 mouse_genomes_project 19 40087235 40109077 - MGP_AJ_P0051840 Hps1 protein_coding protein_coding MGP_AJ_T0051841.1 MGP_AJ_G0025126.1 mouse_genomes_project 19 40087635 40107373 - MGP_AJ_P0051841 Hps1 protein_coding protein_coding MGP_AJ_T0051842.1 MGP_AJ_G0025126.1 mouse_genomes_project 19 40089520 40093033 - Hps1 protein_coding retained_intron MGP_AJ_T0051843.1 MGP_AJ_G0025126.1 mouse_genomes_project 19 40095964 40098966 - Hps1 protein_coding retained_intron MGP_AJ_T0052022.1 MGP_AJ_G0025181.1 mouse_genomes_project 19 43744924 43747194 + MGP_AJ_P0052022 Fbxl15 protein_coding protein_coding MGP_AJ_T0052023.1 MGP_AJ_G0025181.1 mouse_genomes_project 19 43744927 43747193 + MGP_AJ_P0052023 Fbxl15 protein_coding protein_coding MGP_AJ_T0050639.1 MGP_AJ_G0024700.1 mouse_genomes_project 19 2790729 2815984 - MGP_AJ_P0050639 Pola2 protein_coding protein_coding MGP_AJ_T0050640.1 MGP_AJ_G0024700.1 mouse_genomes_project 19 2791291 2815984 - MGP_AJ_P0050640 Pola2 protein_coding protein_coding MGP_AJ_T0051239.1 MGP_AJ_G0024883.1 mouse_genomes_project 19 9404129 9422115 + MGP_AJ_P0051239 Fam111a protein_coding protein_coding MGP_AJ_T0051240.1 MGP_AJ_G0024883.1 mouse_genomes_project 19 9404129 9422123 + MGP_AJ_P0051240 Fam111a protein_coding protein_coding MGP_AJ_T0051241.1 MGP_AJ_G0024883.1 mouse_genomes_project 19 9409480 9422117 + MGP_AJ_P0051241 Fam111a protein_coding protein_coding MGP_AJ_T0102111.1 MGP_AJ_G0039874.1 mouse_genomes_project 19 43766147 43768254 - unitary_pseudogene processed_transcript MGP_AJ_T0102112.1 MGP_AJ_G0039874.1 mouse_genomes_project 19 43766845 43768254 - unitary_pseudogene unitary_pseudogene MGP_AJ_T0099734.1 MGP_AJ_G0037700.1 mouse_genomes_project 19 39296762 39296861 + Gm23113 snRNA snRNA MGP_AJ_T0051267.1 MGP_AJ_G0024896.1 mouse_genomes_project 19 9767054 9767999 - MGP_AJ_P0051267 Olfr1448 protein_coding protein_coding MGP_AJ_T0050395.1 MGP_AJ_G0024618.1 mouse_genomes_project 19 958437 964732 - MGP_AJ_P0050395 Rps6kb2 protein_coding protein_coding MGP_AJ_T0050396.1 MGP_AJ_G0024618.1 mouse_genomes_project 19 958443 964783 - MGP_AJ_P0050396 Rps6kb2 protein_coding nonsense_mediated_decay MGP_AJ_T0050397.1 MGP_AJ_G0024618.1 mouse_genomes_project 19 958446 964803 - Rps6kb2 protein_coding retained_intron MGP_AJ_T0050398.1 MGP_AJ_G0024618.1 mouse_genomes_project 19 958446 959804 - Rps6kb2 protein_coding retained_intron MGP_AJ_T0050399.1 MGP_AJ_G0024618.1 mouse_genomes_project 19 958446 964787 - MGP_AJ_P0050399 Rps6kb2 protein_coding nonsense_mediated_decay MGP_AJ_T0050400.1 MGP_AJ_G0024618.1 mouse_genomes_project 19 958637 963817 - Rps6kb2 protein_coding processed_transcript MGP_AJ_T0050401.1 MGP_AJ_G0024618.1 mouse_genomes_project 19 958637 964772 - MGP_AJ_P0050401 Rps6kb2 protein_coding nonsense_mediated_decay MGP_AJ_T0050402.1 MGP_AJ_G0024618.1 mouse_genomes_project 19 963746 964787 - Rps6kb2 protein_coding processed_transcript MGP_AJ_T0050403.1 MGP_AJ_G0024618.1 mouse_genomes_project 19 964003 964817 - Rps6kb2 protein_coding retained_intron MGP_AJ_T0050404.1 MGP_AJ_G0024618.1 mouse_genomes_project 19 964301 964841 - Rps6kb2 protein_coding processed_transcript MGP_AJ_T0051679.1 MGP_AJ_G0025069.1 mouse_genomes_project 19 35705342 35745256 + Plce1 protein_coding processed_transcript MGP_AJ_T0051680.1 MGP_AJ_G0025069.1 mouse_genomes_project 19 35705354 36031016 + MGP_AJ_P0051680 Plce1 protein_coding protein_coding MGP_AJ_T0051681.1 MGP_AJ_G0025069.1 mouse_genomes_project 19 35745386 36032646 + MGP_AJ_P0051681 Plce1 protein_coding protein_coding MGP_AJ_T0051682.1 MGP_AJ_G0025069.1 mouse_genomes_project 19 35745398 36030381 + MGP_AJ_P0051682 Plce1 protein_coding protein_coding MGP_AJ_T0051683.1 MGP_AJ_G0025069.1 mouse_genomes_project 19 35826401 35894840 + MGP_AJ_P0051683 Plce1 protein_coding protein_coding MGP_AJ_T0051684.1 MGP_AJ_G0025069.1 mouse_genomes_project 19 35968212 36031174 + Plce1 protein_coding retained_intron MGP_AJ_T0051685.1 MGP_AJ_G0025069.1 mouse_genomes_project 19 35980851 35998819 + Plce1 protein_coding retained_intron MGP_AJ_T0051099.1 MGP_AJ_G0024821.1 mouse_genomes_project 19 7445756 7480565 + MGP_AJ_P0051099 Vwce protein_coding protein_coding MGP_AJ_T0051235.1 MGP_AJ_G0024879.1 mouse_genomes_project 19 9264195 9265283 + MGP_AJ_P0051235 Olfr1441 protein_coding protein_coding MGP_AJ_T0007072.1 MGP_AJ_G0005805.1 mouse_genomes_project 19 8181780 8183394 + Gm28935 lincRNA lincRNA MGP_AJ_T0051650.1 MGP_AJ_G0025055.1 mouse_genomes_project 19 34470218 34566938 - MGP_AJ_P0051650 Ide protein_coding protein_coding MGP_AJ_T0051651.1 MGP_AJ_G0025055.1 mouse_genomes_project 19 34471915 34506024 - Ide protein_coding processed_transcript MGP_AJ_T0051652.1 MGP_AJ_G0025055.1 mouse_genomes_project 19 34482067 34492367 - Ide protein_coding retained_intron MGP_AJ_T0051653.1 MGP_AJ_G0025055.1 mouse_genomes_project 19 34501978 34512205 - Ide protein_coding processed_transcript MGP_AJ_T0051654.1 MGP_AJ_G0025055.1 mouse_genomes_project 19 34502282 34541043 - Ide protein_coding retained_intron MGP_AJ_T0050862.1 MGP_AJ_G0024745.1 mouse_genomes_project 19 3751532 3756231 - MGP_AJ_P0050862 Dnajc4 protein_coding protein_coding MGP_AJ_T0051355.1 MGP_AJ_G0024951.1 mouse_genomes_project 19 17670771 17705282 - MGP_AJ_P0051355 Aldh1a7 protein_coding protein_coding MGP_AJ_T0098641.1 MGP_AJ_G0036625.1 mouse_genomes_project 19 32771722 32771853 - Gm22853 rRNA rRNA MGP_AJ_T0051087.1 MGP_AJ_G0024814.1 mouse_genomes_project 19 7308870 7333285 - MGP_AJ_P0051087 Sdhaf2 protein_coding protein_coding MGP_AJ_T0052002.1 MGP_AJ_G0025178.1 mouse_genomes_project 19 43569709 43703241 + MGP_AJ_P0052002 Gbf1 protein_coding protein_coding MGP_AJ_T0052003.1 MGP_AJ_G0025178.1 mouse_genomes_project 19 43569730 43673005 + Gbf1 protein_coding retained_intron MGP_AJ_T0052004.1 MGP_AJ_G0025178.1 mouse_genomes_project 19 43569748 43685194 + Gbf1 protein_coding retained_intron MGP_AJ_T0052005.1 MGP_AJ_G0025178.1 mouse_genomes_project 19 43569773 43663159 + Gbf1 protein_coding processed_transcript MGP_AJ_T0052006.1 MGP_AJ_G0025178.1 mouse_genomes_project 19 43663059 43703240 + MGP_AJ_P0052006 Gbf1 protein_coding protein_coding MGP_AJ_T0052007.1 MGP_AJ_G0025178.1 mouse_genomes_project 19 43671074 43676773 + MGP_AJ_P0052007 Gbf1 protein_coding protein_coding MGP_AJ_T0052009.1 MGP_AJ_G0025178.1 mouse_genomes_project 19 43685804 43687719 + Gbf1 protein_coding processed_transcript MGP_AJ_T0052010.1 MGP_AJ_G0025178.1 mouse_genomes_project 19 43686725 43690408 + Gbf1 protein_coding retained_intron MGP_AJ_T0052011.1 MGP_AJ_G0025178.1 mouse_genomes_project 19 43696602 43697739 + Gbf1 protein_coding retained_intron MGP_AJ_T0052012.1 MGP_AJ_G0025178.1 mouse_genomes_project 19 43696909 43700413 + MGP_AJ_P0052012 Gbf1 protein_coding nonsense_mediated_decay MGP_AJ_T0052013.1 MGP_AJ_G0025178.1 mouse_genomes_project 19 43697064 43700216 + Gbf1 protein_coding retained_intron MGP_AJ_T0052014.1 MGP_AJ_G0025178.1 mouse_genomes_project 19 43699573 43700757 + Gbf1 protein_coding processed_transcript MGP_AJ_T0052015.1 MGP_AJ_G0025178.1 mouse_genomes_project 19 43699731 43700671 + Gbf1 protein_coding retained_intron MGP_AJ_T0052016.1 MGP_AJ_G0025178.1 mouse_genomes_project 19 43701293 43702711 + Gbf1 protein_coding retained_intron MGP_AJ_T0099717.1 MGP_AJ_G0037683.1 mouse_genomes_project 19 258718 258823 + Gm23940 snRNA snRNA MGP_AJ_T0051660.1 MGP_AJ_G0025061.1 mouse_genomes_project 19 35115797 35261453 - MGP_AJ_P0051660 Myof protein_coding protein_coding MGP_AJ_T0051661.1 MGP_AJ_G0025061.1 mouse_genomes_project 19 35115797 35261453 - MGP_AJ_P0051661 Myof protein_coding protein_coding MGP_AJ_T0051662.1 MGP_AJ_G0025061.1 mouse_genomes_project 19 35116490 35261197 - MGP_AJ_P0051662 Myof protein_coding unknown_likely_coding MGP_AJ_T0050538.1 MGP_AJ_G0024670.1 mouse_genomes_project 19 2253207 2260567 - MGP_AJ_P0050538 Drap1 protein_coding protein_coding MGP_AJ_T0050539.1 MGP_AJ_G0024670.1 mouse_genomes_project 19 2258658 2259776 - Drap1 protein_coding retained_intron MGP_AJ_T0050540.1 MGP_AJ_G0024670.1 mouse_genomes_project 19 2258662 2260073 - Drap1 protein_coding retained_intron MGP_AJ_T0050541.1 MGP_AJ_G0024670.1 mouse_genomes_project 19 2258679 2260640 - Drap1 protein_coding retained_intron MGP_AJ_T0050542.1 MGP_AJ_G0024670.1 mouse_genomes_project 19 2258679 2260819 - MGP_AJ_P0050542 Drap1 protein_coding protein_coding MGP_AJ_T0050543.1 MGP_AJ_G0024670.1 mouse_genomes_project 19 2258713 2259934 - Drap1 protein_coding retained_intron MGP_AJ_T0050544.1 MGP_AJ_G0024670.1 mouse_genomes_project 19 2259459 2260632 - Drap1 protein_coding retained_intron MGP_AJ_T0051899.1 MGP_AJ_G0025145.1 mouse_genomes_project 19 41670339 41683519 + MGP_AJ_P0051899 Scd2 protein_coding protein_coding MGP_AJ_T0051513.1 MGP_AJ_G0025005.1 mouse_genomes_project 19 26878132 26882707 - MGP_AJ_P0051513 Ranbp6 protein_coding protein_coding MGP_AJ_T0051374.1 MGP_AJ_G0024958.1 mouse_genomes_project 19 18760679 18840332 + MGP_AJ_P0051374 Tmem2 protein_coding protein_coding MGP_AJ_T0051375.1 MGP_AJ_G0024958.1 mouse_genomes_project 19 18760679 18840332 + MGP_AJ_P0051375 Tmem2 protein_coding protein_coding MGP_AJ_T0010297.1 MGP_AJ_G0008419.1 mouse_genomes_project 19 14836339 14836432 - Gm23063 miRNA miRNA MGP_AJ_T0050698.1 MGP_AJ_G0024715.1 mouse_genomes_project 19 2978640 2981223 - MGP_AJ_P0050698 Sac3d1 protein_coding protein_coding MGP_AJ_T0050459.1 MGP_AJ_G0024635.1 mouse_genomes_project 19 1436057 1514957 - MGP_AJ_P0050459 Gm960 protein_coding unknown_likely_coding MGP_AJ_T0050460.1 MGP_AJ_G0024635.1 mouse_genomes_project 19 1436077 1515419 - MGP_AJ_P0050460 Gm960 protein_coding protein_coding MGP_AJ_T0050461.1 MGP_AJ_G0024635.1 mouse_genomes_project 19 1461735 1515066 - MGP_AJ_P0050461 Gm960 protein_coding protein_coding MGP_AJ_T0052202.1 MGP_AJ_G0025243.1 mouse_genomes_project 19 54269566 54272051 + MGP_AJ_P0052202 Adrb1 protein_coding protein_coding MGP_AJ_T0013374.1 MGP_AJ_G0011469.1 mouse_genomes_project 19 4502778 4503894 - processed_pseudogene processed_pseudogene MGP_AJ_T0099739.1 MGP_AJ_G0037705.1 mouse_genomes_project 19 48727228 48727335 - Gm25644 snRNA snRNA MGP_AJ_T0099725.1 MGP_AJ_G0037691.1 mouse_genomes_project 19 15681920 15682084 + Gm23238 snRNA snRNA MGP_AJ_T0007123.1 MGP_AJ_G0005842.1 mouse_genomes_project 19 57735881 57753827 + E330013P04Rik lincRNA lincRNA MGP_AJ_T0007124.1 MGP_AJ_G0005842.1 mouse_genomes_project 19 57735910 57744290 + E330013P04Rik lincRNA lincRNA MGP_AJ_T0007125.1 MGP_AJ_G0005842.1 mouse_genomes_project 19 57742494 57748544 + E330013P04Rik lincRNA lincRNA MGP_AJ_T0051264.1 MGP_AJ_G0024893.1 mouse_genomes_project 19 9730133 9731134 + MGP_AJ_P0051264 Olfr1445 protein_coding protein_coding MGP_AJ_T0100994.1 MGP_AJ_G0038960.1 mouse_genomes_project 19 20620012 20620114 + Gm22144 snoRNA snoRNA MGP_AJ_T0100979.1 MGP_AJ_G0038945.1 mouse_genomes_project 19 5675688 5675760 + Gm25855 snoRNA snoRNA MGP_AJ_T0052192.1 MGP_AJ_G0025240.1 mouse_genomes_project 19 54002745 54027919 + MGP_AJ_P0052192 Plekhs1 protein_coding protein_coding MGP_AJ_T0052193.1 MGP_AJ_G0025240.1 mouse_genomes_project 19 54002745 54027919 + MGP_AJ_P0052193 Plekhs1 protein_coding protein_coding MGP_AJ_T0052194.1 MGP_AJ_G0025240.1 mouse_genomes_project 19 54005678 54027038 + MGP_AJ_P0052194 Plekhs1 protein_coding unknown_likely_coding MGP_AJ_T0050535.1 MGP_AJ_G0024667.1 mouse_genomes_project 19 2200028 2204734 + MGP_AJ_P0050535 Eif1ad protein_coding protein_coding MGP_AJ_T0013385.1 MGP_AJ_G0011480.1 mouse_genomes_project 19 20643164 20644154 + processed_pseudogene processed_pseudogene MGP_AJ_T0051475.1 MGP_AJ_G0024993.1 mouse_genomes_project 19 26066527 26093652 - MGP_AJ_P0051475 Ak3 protein_coding protein_coding MGP_AJ_T0051476.1 MGP_AJ_G0024993.1 mouse_genomes_project 19 26071595 26072939 - MGP_AJ_P0051476 Ak3 protein_coding protein_coding MGP_AJ_T0051392.1 MGP_AJ_G0024969.1 mouse_genomes_project 19 21071620 21119842 - MGP_AJ_P0051392 Tjp2 protein_coding unknown_likely_coding MGP_AJ_T0051137.1 MGP_AJ_G0024833.1 mouse_genomes_project 19 7780235 7792612 - MGP_AJ_P0051137 Ms4a10 protein_coding protein_coding MGP_AJ_T0051138.1 MGP_AJ_G0024833.1 mouse_genomes_project 19 7780239 7792587 - MGP_AJ_P0051138 Ms4a10 protein_coding protein_coding MGP_AJ_T0051139.1 MGP_AJ_G0024833.1 mouse_genomes_project 19 7780242 7783810 - MGP_AJ_P0051139 Ms4a10 protein_coding protein_coding MGP_AJ_T0052263.1 MGP_AJ_G0025259.1 mouse_genomes_project 19 56533623 56560926 + MGP_AJ_P0052263 Eno4 protein_coding protein_coding MGP_AJ_T0052264.1 MGP_AJ_G0025259.1 mouse_genomes_project 19 56533623 56560924 + MGP_AJ_P0052264 Eno4 protein_coding protein_coding MGP_AJ_T0052265.1 MGP_AJ_G0025259.1 mouse_genomes_project 19 56543286 56560922 + MGP_AJ_P0052265 Eno4 protein_coding protein_coding MGP_AJ_T0052266.1 MGP_AJ_G0025259.1 mouse_genomes_project 19 56545568 56560438 + MGP_AJ_P0052266 Eno4 protein_coding nonsense_mediated_decay MGP_AJ_T0003876.1 MGP_AJ_G0003465.1 mouse_genomes_project 19 44960633 44964230 + Gm19557 antisense antisense MGP_AJ_T0051388.1 MGP_AJ_G0024965.1 mouse_genomes_project 19 20664862 20699018 + MGP_AJ_P0051388 Ptar1 protein_coding protein_coding MGP_AJ_T0098639.1 MGP_AJ_G0036623.1 mouse_genomes_project 19 3008014 3008134 + n-R5s19 rRNA rRNA MGP_AJ_T0007121.1 MGP_AJ_G0005840.1 mouse_genomes_project 19 57090212 57160310 + 2700089I24Rik lincRNA lincRNA MGP_AJ_T0010290.1 MGP_AJ_G0008412.1 mouse_genomes_project 19 5694948 5695057 + Mir6992 miRNA miRNA MGP_AJ_T0051908.1 MGP_AJ_G0025151.1 mouse_genomes_project 19 41939274 41946129 - MGP_AJ_P0051908 Ndufb8 protein_coding protein_coding MGP_AJ_T0051909.1 MGP_AJ_G0025151.1 mouse_genomes_project 19 41940942 41946143 - MGP_AJ_P0051909 Ndufb8 protein_coding protein_coding MGP_AJ_T0051910.1 MGP_AJ_G0025151.1 mouse_genomes_project 19 41940955 41946122 - MGP_AJ_P0051910 Ndufb8 protein_coding nonsense_mediated_decay MGP_AJ_T0051911.1 MGP_AJ_G0025151.1 mouse_genomes_project 19 41940957 41943583 - Ndufb8 protein_coding retained_intron MGP_AJ_T0051912.1 MGP_AJ_G0025151.1 mouse_genomes_project 19 41943324 41945689 - MGP_AJ_P0051912 Ndufb8 protein_coding protein_coding MGP_AJ_T0051913.1 MGP_AJ_G0025151.1 mouse_genomes_project 19 41943542 41946107 - MGP_AJ_P0051913 Ndufb8 protein_coding protein_coding MGP_AJ_T0051914.1 MGP_AJ_G0025151.1 mouse_genomes_project 19 41943977 41946108 - Ndufb8 protein_coding retained_intron MGP_AJ_T0051915.1 MGP_AJ_G0025151.1 mouse_genomes_project 19 41945403 41946129 - Ndufb8 protein_coding retained_intron MGP_AJ_T0051916.1 MGP_AJ_G0025151.1 mouse_genomes_project 19 41945417 41946126 - Ndufb8 protein_coding retained_intron MGP_AJ_T0052310.1 MGP_AJ_G0025277.1 mouse_genomes_project 19 58886742 58890802 - MGP_AJ_P0052310 Csf2ra protein_coding protein_coding MGP_AJ_T0052311.1 MGP_AJ_G0025277.1 mouse_genomes_project 19 58888047 58890818 - MGP_AJ_P0052311 Csf2ra protein_coding unknown_likely_coding MGP_AJ_T0051603.1 MGP_AJ_G0025044.1 mouse_genomes_project 19 33125344 33229919 - MGP_AJ_P0051603 Htr7 protein_coding nonsense_mediated_decay MGP_AJ_T0051604.1 MGP_AJ_G0025044.1 mouse_genomes_project 19 33125344 33229919 - MGP_AJ_P0051604 Htr7 protein_coding nonsense_mediated_decay MGP_AJ_T0051605.1 MGP_AJ_G0025044.1 mouse_genomes_project 19 33125344 33229899 - MGP_AJ_P0051605 Htr7 protein_coding protein_coding MGP_AJ_T0051606.1 MGP_AJ_G0025044.1 mouse_genomes_project 19 33125355 33229927 - MGP_AJ_P0051606 Htr7 protein_coding protein_coding MGP_AJ_T0051607.1 MGP_AJ_G0025044.1 mouse_genomes_project 19 33126430 33230066 - MGP_AJ_P0051607 Htr7 protein_coding nonsense_mediated_decay MGP_AJ_T0051608.1 MGP_AJ_G0025044.1 mouse_genomes_project 19 33126925 33229932 - MGP_AJ_P0051608 Htr7 protein_coding protein_coding MGP_AJ_T0007067.1 MGP_AJ_G0005800.1 mouse_genomes_project 19 2866489 2872293 + Gm10814 lincRNA lincRNA MGP_AJ_T0051572.1 MGP_AJ_G0025027.1 mouse_genomes_project 19 31099957 31115567 + MGP_AJ_P0051572 Lipf protein_coding protein_coding MGP_AJ_T0051210.1 MGP_AJ_G0024857.1 mouse_genomes_project 19 8573883 8588017 + MGP_AJ_P0051210 Oosp3 protein_coding protein_coding MGP_AJ_T0051211.1 MGP_AJ_G0024857.1 mouse_genomes_project 19 8573906 8588033 + MGP_AJ_P0051211 Oosp3 protein_coding protein_coding MGP_AJ_T0050977.1 MGP_AJ_G0024776.1 mouse_genomes_project 19 5724519 5726465 - MGP_AJ_P0050977 Taf6l protein_coding protein_coding MGP_AJ_T0050978.1 MGP_AJ_G0024776.1 mouse_genomes_project 19 5726351 5738806 - MGP_AJ_P0050978 Taf6l protein_coding protein_coding MGP_AJ_T0050979.1 MGP_AJ_G0024776.1 mouse_genomes_project 19 5726484 5728960 - Taf6l protein_coding retained_intron MGP_AJ_T0050980.1 MGP_AJ_G0024776.1 mouse_genomes_project 19 5726489 5738747 - MGP_AJ_P0050980 Taf6l protein_coding protein_coding MGP_AJ_T0050981.1 MGP_AJ_G0024776.1 mouse_genomes_project 19 5726491 5738806 - MGP_AJ_P0050981 Taf6l protein_coding protein_coding MGP_AJ_T0050982.1 MGP_AJ_G0024776.1 mouse_genomes_project 19 5726493 5738907 - MGP_AJ_P0050982 Taf6l protein_coding protein_coding MGP_AJ_T0050983.1 MGP_AJ_G0024776.1 mouse_genomes_project 19 5726526 5736489 - MGP_AJ_P0050983 Taf6l protein_coding protein_coding MGP_AJ_T0050984.1 MGP_AJ_G0024776.1 mouse_genomes_project 19 5726526 5736489 - MGP_AJ_P0050984 Taf6l protein_coding protein_coding MGP_AJ_T0050985.1 MGP_AJ_G0024776.1 mouse_genomes_project 19 5727434 5731048 - Taf6l protein_coding retained_intron MGP_AJ_T0050986.1 MGP_AJ_G0024776.1 mouse_genomes_project 19 5729912 5738771 - Taf6l protein_coding retained_intron MGP_AJ_T0050987.1 MGP_AJ_G0024776.1 mouse_genomes_project 19 5730548 5734813 - Taf6l protein_coding processed_transcript MGP_AJ_T0050988.1 MGP_AJ_G0024776.1 mouse_genomes_project 19 5730574 5735167 - Taf6l protein_coding retained_intron MGP_AJ_T0050989.1 MGP_AJ_G0024776.1 mouse_genomes_project 19 5734300 5738755 - Taf6l protein_coding retained_intron MGP_AJ_T0051864.1 MGP_AJ_G0025135.1 mouse_genomes_project 19 41151297 41212419 + MGP_AJ_P0051864 Abcc2 protein_coding protein_coding MGP_AJ_T0051865.1 MGP_AJ_G0025135.1 mouse_genomes_project 19 41151431 41153738 + Abcc2 protein_coding retained_intron MGP_AJ_T0051866.1 MGP_AJ_G0025135.1 mouse_genomes_project 19 41151509 41197035 + MGP_AJ_P0051866 Abcc2 protein_coding unknown_likely_coding MGP_AJ_T0051867.1 MGP_AJ_G0025135.1 mouse_genomes_project 19 41169146 41171938 + Abcc2 protein_coding retained_intron MGP_AJ_T0051868.1 MGP_AJ_G0025135.1 mouse_genomes_project 19 41181638 41184518 + Abcc2 protein_coding retained_intron MGP_AJ_T0051869.1 MGP_AJ_G0025135.1 mouse_genomes_project 19 41197529 41209268 + MGP_AJ_P0051869 Abcc2 protein_coding unknown_likely_coding MGP_AJ_T0051870.1 MGP_AJ_G0025135.1 mouse_genomes_project 19 41210481 41212407 + MGP_AJ_P0051870 Abcc2 protein_coding protein_coding MGP_AJ_T0051341.1 MGP_AJ_G0024947.1 mouse_genomes_project 19 15698918 15845092 + MGP_AJ_P0051341 Trpm6 protein_coding protein_coding MGP_AJ_T0051342.1 MGP_AJ_G0024947.1 mouse_genomes_project 19 15698966 15844719 + MGP_AJ_P0051342 Trpm6 protein_coding unknown_likely_coding MGP_AJ_T0051297.1 MGP_AJ_G0024926.1 mouse_genomes_project 19 10714898 10715950 - MGP_AJ_P0051297 Olfr1499 protein_coding protein_coding MGP_AJ_T0098829.1 MGP_AJ_G0036813.1 mouse_genomes_project 19 8571873 8572012 + Gm26183 scaRNA scaRNA MGP_AJ_T0051274.1 MGP_AJ_G0024903.1 mouse_genomes_project 19 9954893 9955799 - MGP_AJ_P0051274 Olfr1458 protein_coding protein_coding MGP_AJ_T0052039.1 MGP_AJ_G0025189.1 mouse_genomes_project 19 44021427 44080917 + MGP_AJ_P0052039 Wbp1l protein_coding protein_coding MGP_AJ_T0052040.1 MGP_AJ_G0025189.1 mouse_genomes_project 19 44021456 44080913 + MGP_AJ_P0052040 Wbp1l protein_coding nonsense_mediated_decay MGP_AJ_T0052041.1 MGP_AJ_G0025189.1 mouse_genomes_project 19 44021457 44080910 + MGP_AJ_P0052041 Wbp1l protein_coding protein_coding MGP_AJ_T0052042.1 MGP_AJ_G0025189.1 mouse_genomes_project 19 44021467 44068311 + Wbp1l protein_coding processed_transcript MGP_AJ_T0052043.1 MGP_AJ_G0025189.1 mouse_genomes_project 19 44045476 44076080 + Wbp1l protein_coding processed_transcript MGP_AJ_T0052044.1 MGP_AJ_G0025189.1 mouse_genomes_project 19 44045476 44080915 + MGP_AJ_P0052044 Wbp1l protein_coding protein_coding MGP_AJ_T0010281.1 MGP_AJ_G0008403.1 mouse_genomes_project 19 2518337 2518410 - Mir6987 miRNA miRNA MGP_AJ_T0007122.1 MGP_AJ_G0005841.1 mouse_genomes_project 19 57471954 57476795 - Gm17203 lincRNA lincRNA MGP_AJ_T0003874.1 MGP_AJ_G0003463.1 mouse_genomes_project 19 42547870 42553037 - Tlx1os antisense antisense MGP_AJ_T0050531.1 MGP_AJ_G0024664.1 mouse_genomes_project 19 2165179 2173607 + MGP_AJ_P0050531 Catsper1 protein_coding protein_coding MGP_AJ_T0051500.1 MGP_AJ_G0025002.1 mouse_genomes_project 19 26662839 26703809 - MGP_AJ_P0051500 Ermp1 protein_coding protein_coding MGP_AJ_T0051501.1 MGP_AJ_G0025002.1 mouse_genomes_project 19 26662843 26666854 - Ermp1 protein_coding processed_transcript MGP_AJ_T0051502.1 MGP_AJ_G0025002.1 mouse_genomes_project 19 26664820 26703581 - MGP_AJ_P0051502 Ermp1 protein_coding nonsense_mediated_decay MGP_AJ_T0051503.1 MGP_AJ_G0025002.1 mouse_genomes_project 19 26667025 26701421 - MGP_AJ_P0051503 Ermp1 protein_coding nonsense_mediated_decay MGP_AJ_T0051504.1 MGP_AJ_G0025002.1 mouse_genomes_project 19 26667240 26667843 - Ermp1 protein_coding retained_intron MGP_AJ_T0051505.1 MGP_AJ_G0025002.1 mouse_genomes_project 19 26681747 26694917 - Ermp1 protein_coding processed_transcript MGP_AJ_T0051506.1 MGP_AJ_G0025002.1 mouse_genomes_project 19 26682697 26703784 - Ermp1 protein_coding retained_intron MGP_AJ_T0051507.1 MGP_AJ_G0025002.1 mouse_genomes_project 19 26700103 26703772 - Ermp1 protein_coding retained_intron MGP_AJ_T0051710.1 MGP_AJ_G0025086.1 mouse_genomes_project 19 37419980 37454691 - MGP_AJ_P0051710 Cyp2c70 protein_coding protein_coding MGP_AJ_T0051711.1 MGP_AJ_G0025086.1 mouse_genomes_project 19 37430954 37454691 - MGP_AJ_P0051711 Cyp2c70 protein_coding nonsense_mediated_decay MGP_AJ_T0051712.1 MGP_AJ_G0025086.1 mouse_genomes_project 19 37432029 37454691 - MGP_AJ_P0051712 Cyp2c70 protein_coding nonsense_mediated_decay MGP_AJ_T0051713.1 MGP_AJ_G0025086.1 mouse_genomes_project 19 37447570 37454738 - Cyp2c70 protein_coding retained_intron MGP_AJ_T0051269.1 MGP_AJ_G0024898.1 mouse_genomes_project 19 9802614 9803592 + MGP_AJ_P0051269 Olfr1450 protein_coding protein_coding MGP_AJ_T0051284.1 MGP_AJ_G0024913.1 mouse_genomes_project 19 10327855 10329029 - MGP_AJ_P0051284 protein_coding protein_coding MGP_AJ_T0052156.1 MGP_AJ_G0025236.1 mouse_genomes_project 19 53280952 53475235 + MGP_AJ_P0052156 Tcf7l2 protein_coding protein_coding MGP_AJ_T0052157.1 MGP_AJ_G0025236.1 mouse_genomes_project 19 53280952 53475235 + MGP_AJ_P0052157 Tcf7l2 protein_coding protein_coding MGP_AJ_T0052158.1 MGP_AJ_G0025236.1 mouse_genomes_project 19 53280962 53474833 + MGP_AJ_P0052158 Tcf7l2 protein_coding protein_coding MGP_AJ_T0052159.1 MGP_AJ_G0025236.1 mouse_genomes_project 19 53280962 53474810 + MGP_AJ_P0052159 Tcf7l2 protein_coding protein_coding MGP_AJ_T0052160.1 MGP_AJ_G0025236.1 mouse_genomes_project 19 53281026 53474296 + MGP_AJ_P0052160 Tcf7l2 protein_coding protein_coding MGP_AJ_T0052161.1 MGP_AJ_G0025236.1 mouse_genomes_project 19 53281026 53466820 + MGP_AJ_P0052161 Tcf7l2 protein_coding protein_coding MGP_AJ_T0052162.1 MGP_AJ_G0025236.1 mouse_genomes_project 19 53281197 53473790 + MGP_AJ_P0052162 Tcf7l2 protein_coding protein_coding MGP_AJ_T0052163.1 MGP_AJ_G0025236.1 mouse_genomes_project 19 53281381 53454672 + MGP_AJ_P0052163 Tcf7l2 protein_coding protein_coding MGP_AJ_T0052164.1 MGP_AJ_G0025236.1 mouse_genomes_project 19 53281382 53454672 + MGP_AJ_P0052164 Tcf7l2 protein_coding protein_coding MGP_AJ_T0052165.1 MGP_AJ_G0025236.1 mouse_genomes_project 19 53281382 53454671 + MGP_AJ_P0052165 Tcf7l2 protein_coding protein_coding MGP_AJ_T0052166.1 MGP_AJ_G0025236.1 mouse_genomes_project 19 53281410 53452498 + Tcf7l2 protein_coding retained_intron MGP_AJ_T0052167.1 MGP_AJ_G0025236.1 mouse_genomes_project 19 53281410 53466817 + MGP_AJ_P0052167 Tcf7l2 protein_coding protein_coding MGP_AJ_T0052168.1 MGP_AJ_G0025236.1 mouse_genomes_project 19 53281447 53475235 + MGP_AJ_P0052168 Tcf7l2 protein_coding protein_coding MGP_AJ_T0052169.1 MGP_AJ_G0025236.1 mouse_genomes_project 19 53281479 53474812 + MGP_AJ_P0052169 Tcf7l2 protein_coding protein_coding MGP_AJ_T0052170.1 MGP_AJ_G0025236.1 mouse_genomes_project 19 53281583 53473790 + MGP_AJ_P0052170 Tcf7l2 protein_coding protein_coding MGP_AJ_T0052171.1 MGP_AJ_G0025236.1 mouse_genomes_project 19 53281960 53452630 + Tcf7l2 protein_coding retained_intron MGP_AJ_T0052172.1 MGP_AJ_G0025236.1 mouse_genomes_project 19 53434578 53461198 + Tcf7l2 protein_coding processed_transcript MGP_AJ_T0052173.1 MGP_AJ_G0025236.1 mouse_genomes_project 19 53435760 53460546 + MGP_AJ_P0052173 Tcf7l2 protein_coding protein_coding MGP_AJ_T0052174.1 MGP_AJ_G0025236.1 mouse_genomes_project 19 53436736 53474810 + MGP_AJ_P0052174 Tcf7l2 protein_coding protein_coding MGP_AJ_T0052175.1 MGP_AJ_G0025236.1 mouse_genomes_project 19 53436888 53454586 + Tcf7l2 protein_coding processed_transcript MGP_AJ_T0052176.1 MGP_AJ_G0025236.1 mouse_genomes_project 19 53439525 53460621 + Tcf7l2 protein_coding processed_transcript MGP_AJ_T0052177.1 MGP_AJ_G0025236.1 mouse_genomes_project 19 53439769 53461184 + MGP_AJ_P0052177 Tcf7l2 protein_coding protein_coding MGP_AJ_T0051113.1 MGP_AJ_G0024827.1 mouse_genomes_project 19 7674711 7686804 - MGP_AJ_P0051113 Tmem132a protein_coding protein_coding MGP_AJ_T0051114.1 MGP_AJ_G0024827.1 mouse_genomes_project 19 7674723 7686642 - MGP_AJ_P0051114 Tmem132a protein_coding protein_coding MGP_AJ_T0052214.1 MGP_AJ_G0025247.1 mouse_genomes_project 19 54462808 54560043 - MGP_AJ_P0052214 Afap1l2 protein_coding unknown_likely_coding MGP_AJ_T0052215.1 MGP_AJ_G0025247.1 mouse_genomes_project 19 54462820 54560075 - MGP_AJ_P0052215 Afap1l2 protein_coding protein_coding MGP_AJ_T0052216.1 MGP_AJ_G0025247.1 mouse_genomes_project 19 54462820 54560087 - MGP_AJ_P0052216 Afap1l2 protein_coding protein_coding MGP_AJ_T0052217.1 MGP_AJ_G0025247.1 mouse_genomes_project 19 54462820 54560105 - MGP_AJ_P0052217 Afap1l2 protein_coding protein_coding MGP_AJ_T0052218.1 MGP_AJ_G0025247.1 mouse_genomes_project 19 54470858 54479027 - Afap1l2 protein_coding retained_intron MGP_AJ_T0052219.1 MGP_AJ_G0025247.1 mouse_genomes_project 19 54474007 54560105 - MGP_AJ_P0052219 Afap1l2 protein_coding protein_coding MGP_AJ_T0052220.1 MGP_AJ_G0025247.1 mouse_genomes_project 19 54480529 54552924 - MGP_AJ_P0052220 Afap1l2 protein_coding protein_coding MGP_AJ_T0052221.1 MGP_AJ_G0025247.1 mouse_genomes_project 19 54493544 54560085 - Afap1l2 protein_coding retained_intron MGP_AJ_T0050849.1 MGP_AJ_G0024740.1 mouse_genomes_project 19 3704157 3714195 + MGP_AJ_P0050849 Bad protein_coding protein_coding MGP_AJ_T0050850.1 MGP_AJ_G0024740.1 mouse_genomes_project 19 3704619 3714189 + MGP_AJ_P0050850 Bad protein_coding protein_coding MGP_AJ_T0050851.1 MGP_AJ_G0024740.1 mouse_genomes_project 19 3704797 3714190 + MGP_AJ_P0050851 Bad protein_coding protein_coding MGP_AJ_T0050852.1 MGP_AJ_G0024740.1 mouse_genomes_project 19 3705175 3713549 + MGP_AJ_P0050852 Bad protein_coding protein_coding MGP_AJ_T0050853.1 MGP_AJ_G0024740.1 mouse_genomes_project 19 3713063 3714171 + MGP_AJ_P0050853 Bad protein_coding protein_coding MGP_AJ_T0051325.1 MGP_AJ_G0024941.1 mouse_genomes_project 19 14328236 14335466 + MGP_AJ_P0051325 Rfk protein_coding protein_coding MGP_AJ_T0051326.1 MGP_AJ_G0024941.1 mouse_genomes_project 19 14328761 14333975 + Rfk protein_coding processed_transcript MGP_AJ_T0051327.1 MGP_AJ_G0024941.1 mouse_genomes_project 19 14331630 14334078 + Rfk protein_coding processed_transcript MGP_AJ_T0003859.1 MGP_AJ_G0003452.1 mouse_genomes_project 19 8030942 8120473 + 4930526L06Rik antisense antisense MGP_AJ_T0052138.1 MGP_AJ_G0025226.1 mouse_genomes_project 19 51408016 51447122 + MGP_AJ_P0052138 Pdcd4 protein_coding protein_coding MGP_AJ_T0052139.1 MGP_AJ_G0025226.1 mouse_genomes_project 19 51419149 51447122 + MGP_AJ_P0052139 Pdcd4 protein_coding protein_coding MGP_AJ_T0052140.1 MGP_AJ_G0025226.1 mouse_genomes_project 19 51419149 51447122 + MGP_AJ_P0052140 Pdcd4 protein_coding protein_coding MGP_AJ_T0003877.1 MGP_AJ_G0003466.1 mouse_genomes_project 19 45046212 45057209 - Gm16068 antisense antisense MGP_AJ_T0052038.1 MGP_AJ_G0025188.1 mouse_genomes_project 19 43994921 44019249 + MGP_AJ_P0052038 Sfxn2 protein_coding protein_coding MGP_AJ_T0010324.1 MGP_AJ_G0008446.1 mouse_genomes_project 19 55619444 55619514 + Mir5623 miRNA miRNA MGP_AJ_T0051109.1 MGP_AJ_G0024826.1 mouse_genomes_project 19 7656598 7660217 + Slc15a3 protein_coding processed_transcript MGP_AJ_T0051110.1 MGP_AJ_G0024826.1 mouse_genomes_project 19 7659415 7674805 + MGP_AJ_P0051110 Slc15a3 protein_coding protein_coding MGP_AJ_T0051111.1 MGP_AJ_G0024826.1 mouse_genomes_project 19 7659421 7660341 + Slc15a3 protein_coding processed_transcript MGP_AJ_T0051112.1 MGP_AJ_G0024826.1 mouse_genomes_project 19 7659764 7676252 + Slc15a3 protein_coding retained_intron MGP_AJ_T0051478.1 MGP_AJ_G0024995.1 mouse_genomes_project 19 26298793 26364935 + MGP_AJ_P0051478 Jak2 protein_coding protein_coding MGP_AJ_T0051479.1 MGP_AJ_G0024995.1 mouse_genomes_project 19 26298793 26364935 + MGP_AJ_P0051479 Jak2 protein_coding protein_coding MGP_AJ_T0051404.1 MGP_AJ_G0024975.1 mouse_genomes_project 19 21880111 21882456 - MGP_AJ_P0051404 Foxd4 protein_coding protein_coding MGP_AJ_T0050549.1 MGP_AJ_G0024674.1 mouse_genomes_project 19 2295254 2299697 + MGP_AJ_P0050549 Fibp protein_coding protein_coding MGP_AJ_T0050550.1 MGP_AJ_G0024674.1 mouse_genomes_project 19 2295341 2299702 + MGP_AJ_P0050550 Fibp protein_coding unknown_likely_coding MGP_AJ_T0017704.1 MGP_AJ_G0015359.1 mouse_genomes_project 19 23632570 23635168 - Gm20616 processed_transcript processed_transcript MGP_AJ_T0017705.1 MGP_AJ_G0015359.1 mouse_genomes_project 19 23632781 23635159 - Gm20616 processed_transcript processed_transcript MGP_AJ_T0013387.1 MGP_AJ_G0011482.1 mouse_genomes_project 19 22806453 22807290 - processed_pseudogene processed_pseudogene MGP_AJ_T0050638.1 MGP_AJ_G0024699.1 mouse_genomes_project 19 2766713 2773963 - MGP_AJ_P0050638 Cdc42ep2 protein_coding protein_coding MGP_AJ_T0010313.1 MGP_AJ_G0008435.1 mouse_genomes_project 19 40979787 40979918 + Gm22646 miRNA miRNA MGP_AJ_T0050869.1 MGP_AJ_G0024750.1 mouse_genomes_project 19 3825034 3965719 + MGP_AJ_P0050869 Macrod1 protein_coding protein_coding MGP_AJ_T0051937.1 MGP_AJ_G0025161.1 mouse_genomes_project 19 42475888 42479942 + MGP_AJ_P0051937 Kazald1 protein_coding protein_coding MGP_AJ_T0051938.1 MGP_AJ_G0025161.1 mouse_genomes_project 19 42476786 42479942 + MGP_AJ_P0051938 Kazald1 protein_coding protein_coding MGP_AJ_T0051701.1 MGP_AJ_G0025077.1 mouse_genomes_project 19 36605878 36663243 - MGP_AJ_P0051701 Cyp2c38 protein_coding protein_coding MGP_AJ_T0050593.1 MGP_AJ_G0024687.1 mouse_genomes_project 19 2504185 2528034 - MGP_AJ_P0050593 Pcnx3 protein_coding protein_coding MGP_AJ_T0050594.1 MGP_AJ_G0024687.1 mouse_genomes_project 19 2504188 2513496 - Pcnx3 protein_coding retained_intron MGP_AJ_T0050595.1 MGP_AJ_G0024687.1 mouse_genomes_project 19 2504190 2527275 - MGP_AJ_P0050595 Pcnx3 protein_coding protein_coding MGP_AJ_T0050596.1 MGP_AJ_G0024687.1 mouse_genomes_project 19 2504786 2505749 - Pcnx3 protein_coding retained_intron MGP_AJ_T0050597.1 MGP_AJ_G0024687.1 mouse_genomes_project 19 2504966 2506533 - MGP_AJ_P0050597 Pcnx3 protein_coding nonsense_mediated_decay MGP_AJ_T0050598.1 MGP_AJ_G0024687.1 mouse_genomes_project 19 2505541 2506077 - Pcnx3 protein_coding retained_intron MGP_AJ_T0050599.1 MGP_AJ_G0024687.1 mouse_genomes_project 19 2512840 2524005 - MGP_AJ_P0050599 Pcnx3 protein_coding protein_coding MGP_AJ_T0050600.1 MGP_AJ_G0024687.1 mouse_genomes_project 19 2514471 2518911 - MGP_AJ_P0050600 Pcnx3 protein_coding protein_coding MGP_AJ_T0050601.1 MGP_AJ_G0024687.1 mouse_genomes_project 19 2518316 2522680 - MGP_AJ_P0050601 Pcnx3 protein_coding protein_coding MGP_AJ_T0050602.1 MGP_AJ_G0024687.1 mouse_genomes_project 19 2518736 2523210 - MGP_AJ_P0050602 Pcnx3 protein_coding protein_coding MGP_AJ_T0050603.1 MGP_AJ_G0024687.1 mouse_genomes_project 19 2519267 2520870 - Pcnx3 protein_coding retained_intron MGP_AJ_T0050604.1 MGP_AJ_G0024687.1 mouse_genomes_project 19 2523077 2527821 - Pcnx3 protein_coding retained_intron MGP_AJ_T0051217.1 MGP_AJ_G0024861.1 mouse_genomes_project 19 8706486 8707573 - MGP_AJ_P0051217 Olfr1417 protein_coding protein_coding MGP_AJ_T0051984.1 MGP_AJ_G0025174.1 mouse_genomes_project 19 43457419 43475096 + Pprc1 protein_coding processed_transcript MGP_AJ_T0051985.1 MGP_AJ_G0025174.1 mouse_genomes_project 19 43469508 43485805 + MGP_AJ_P0051985 Pprc1 protein_coding protein_coding MGP_AJ_T0051986.1 MGP_AJ_G0025174.1 mouse_genomes_project 19 43469550 43485809 + MGP_AJ_P0051986 Pprc1 protein_coding protein_coding MGP_AJ_T0051987.1 MGP_AJ_G0025174.1 mouse_genomes_project 19 43469553 43485803 + MGP_AJ_P0051987 Pprc1 protein_coding protein_coding MGP_AJ_T0051988.1 MGP_AJ_G0025174.1 mouse_genomes_project 19 43469801 43474357 + Pprc1 protein_coding processed_transcript MGP_AJ_T0051989.1 MGP_AJ_G0025174.1 mouse_genomes_project 19 43469801 43475337 + MGP_AJ_P0051989 Pprc1 protein_coding protein_coding MGP_AJ_T0051990.1 MGP_AJ_G0025174.1 mouse_genomes_project 19 43469833 43475702 + MGP_AJ_P0051990 Pprc1 protein_coding protein_coding MGP_AJ_T0051991.1 MGP_AJ_G0025174.1 mouse_genomes_project 19 43470205 43475527 + MGP_AJ_P0051991 Pprc1 protein_coding protein_coding MGP_AJ_T0051992.1 MGP_AJ_G0025174.1 mouse_genomes_project 19 43470228 43475543 + MGP_AJ_P0051992 Pprc1 protein_coding protein_coding MGP_AJ_T0051993.1 MGP_AJ_G0025174.1 mouse_genomes_project 19 43476979 43485696 + Pprc1 protein_coding retained_intron MGP_AJ_T0051994.1 MGP_AJ_G0025174.1 mouse_genomes_project 19 43480732 43481996 + Pprc1 protein_coding processed_transcript MGP_AJ_T0051995.1 MGP_AJ_G0025174.1 mouse_genomes_project 19 43484652 43485696 + Pprc1 protein_coding retained_intron MGP_AJ_T0050448.1 MGP_AJ_G0024630.1 mouse_genomes_project 19 1250157 1284431 - MGP_AJ_P0050448 Syt12 protein_coding protein_coding MGP_AJ_T0050449.1 MGP_AJ_G0024630.1 mouse_genomes_project 19 1251982 1259423 - Syt12 protein_coding processed_transcript MGP_AJ_T0050450.1 MGP_AJ_G0024630.1 mouse_genomes_project 19 1264107 1284111 - MGP_AJ_P0050450 Syt12 protein_coding protein_coding MGP_AJ_T0050451.1 MGP_AJ_G0024630.1 mouse_genomes_project 19 1273260 1284141 - Syt12 protein_coding retained_intron MGP_AJ_T0050507.1 MGP_AJ_G0024653.1 mouse_genomes_project 19 1860181 1868636 + MGP_AJ_P0050507 Brms1 protein_coding protein_coding MGP_AJ_T0010277.1 MGP_AJ_G0008399.1 mouse_genomes_project 19 1017967 1018054 - Gm26115 miRNA miRNA MGP_AJ_T0100984.1 MGP_AJ_G0038950.1 mouse_genomes_project 19 5677036 5677105 + Gm22680 snoRNA snoRNA MGP_AJ_T0051875.1 MGP_AJ_G0025138.1 mouse_genomes_project 19 41377977 41402746 - MGP_AJ_P0051875 Cyp2c44 protein_coding protein_coding MGP_AJ_T0050706.1 MGP_AJ_G0024717.1 mouse_genomes_project 19 2997200 3004431 - Arl2 protein_coding retained_intron MGP_AJ_T0050707.1 MGP_AJ_G0024717.1 mouse_genomes_project 19 2997209 3004697 - MGP_AJ_P0050707 Arl2 protein_coding protein_coding MGP_AJ_T0050708.1 MGP_AJ_G0024717.1 mouse_genomes_project 19 3000296 3000987 - Arl2 protein_coding retained_intron MGP_AJ_T0051614.1 MGP_AJ_G0025048.1 mouse_genomes_project 19 33748580 33816239 + MGP_AJ_P0051614 Hectd2 protein_coding nonsense_mediated_decay MGP_AJ_T0051615.1 MGP_AJ_G0025048.1 mouse_genomes_project 19 33748609 33815349 + MGP_AJ_P0051615 Hectd2 protein_coding protein_coding MGP_AJ_T0051616.1 MGP_AJ_G0025048.1 mouse_genomes_project 19 33748610 33786290 + Hectd2 protein_coding retained_intron MGP_AJ_T0051617.1 MGP_AJ_G0025048.1 mouse_genomes_project 19 33748610 33816242 + MGP_AJ_P0051617 Hectd2 protein_coding protein_coding MGP_AJ_T0051618.1 MGP_AJ_G0025048.1 mouse_genomes_project 19 33748619 33792475 + Hectd2 protein_coding retained_intron MGP_AJ_T0051619.1 MGP_AJ_G0025048.1 mouse_genomes_project 19 33748770 33763728 + Hectd2 protein_coding retained_intron MGP_AJ_T0051620.1 MGP_AJ_G0025048.1 mouse_genomes_project 19 33748801 33813938 + MGP_AJ_P0051620 Hectd2 protein_coding nonsense_mediated_decay MGP_AJ_T0051621.1 MGP_AJ_G0025048.1 mouse_genomes_project 19 33780626 33813938 + MGP_AJ_P0051621 Hectd2 protein_coding nonsense_mediated_decay MGP_AJ_T0051622.1 MGP_AJ_G0025048.1 mouse_genomes_project 19 33800266 33807505 + Hectd2 protein_coding retained_intron MGP_AJ_T0011473.1 MGP_AJ_G0009595.1 mouse_genomes_project 19 2686558 2686680 - Gm28006 misc_RNA misc_RNA MGP_AJ_T0007075.1 MGP_AJ_G0005808.1 mouse_genomes_project 19 17399933 17417452 + 1500015L24Rik lincRNA lincRNA MGP_AJ_T0007076.1 MGP_AJ_G0005808.1 mouse_genomes_project 19 17417030 17417444 + 1500015L24Rik lincRNA lincRNA MGP_AJ_T0051154.1 MGP_AJ_G0024840.1 mouse_genomes_project 19 8043920 8052505 - MGP_AJ_P0051154 Ms4a12 protein_coding protein_coding MGP_AJ_T0011481.1 MGP_AJ_G0009603.1 mouse_genomes_project 19 31424830 31424989 + Gm27818 misc_RNA misc_RNA MGP_AJ_T0011474.1 MGP_AJ_G0009596.1 mouse_genomes_project 19 5633269 5633598 - Gm22820 misc_RNA misc_RNA MGP_AJ_T0098808.1 MGP_AJ_G0036792.1 mouse_genomes_project 19 2666293 2666349 - Gm27702 sRNA sRNA MGP_AJ_T0051761.1 MGP_AJ_G0025100.1 mouse_genomes_project 19 38790019 38869926 + MGP_AJ_P0051761 Lcor protein_coding protein_coding MGP_AJ_T0051762.1 MGP_AJ_G0025100.1 mouse_genomes_project 19 38857322 38867461 + MGP_AJ_P0051762 Lcor protein_coding protein_coding MGP_AJ_T0051573.1 MGP_AJ_G0025028.1 mouse_genomes_project 19 31147473 31184589 + MGP_AJ_P0051573 Lipk protein_coding protein_coding MGP_AJ_T0050496.1 MGP_AJ_G0024648.1 mouse_genomes_project 19 1749367 1761480 - MGP_AJ_P0050496 Peli3 protein_coding protein_coding MGP_AJ_T0050497.1 MGP_AJ_G0024648.1 mouse_genomes_project 19 1750571 1761515 - MGP_AJ_P0050497 Peli3 protein_coding protein_coding MGP_AJ_T0050498.1 MGP_AJ_G0024648.1 mouse_genomes_project 19 1753766 1757409 - Peli3 protein_coding retained_intron MGP_AJ_T0050499.1 MGP_AJ_G0024648.1 mouse_genomes_project 19 1753792 1761486 - Peli3 protein_coding processed_transcript MGP_AJ_T0050500.1 MGP_AJ_G0024648.1 mouse_genomes_project 19 1753796 1761461 - MGP_AJ_P0050500 Peli3 protein_coding protein_coding MGP_AJ_T0050501.1 MGP_AJ_G0024648.1 mouse_genomes_project 19 1753803 1761455 - Peli3 protein_coding processed_transcript MGP_AJ_T0050502.1 MGP_AJ_G0024648.1 mouse_genomes_project 19 1759987 1761434 - Peli3 protein_coding retained_intron MGP_AJ_T0051236.1 MGP_AJ_G0024880.1 mouse_genomes_project 19 9269835 9274041 + MGP_AJ_P0051236 Pfpl protein_coding protein_coding MGP_AJ_T0051357.1 MGP_AJ_G0024953.1 mouse_genomes_project 19 18238329 18246777 + MGP_AJ_P0051357 protein_coding unknown_likely_coding MGP_AJ_T0051358.1 MGP_AJ_G0024953.1 mouse_genomes_project 19 18238789 18246639 + MGP_AJ_P0051358 protein_coding nonsense_mediated_decay MGP_AJ_T0051359.1 MGP_AJ_G0024953.1 mouse_genomes_project 19 18239348 18243244 + MGP_AJ_P0051359 protein_coding protein_coding MGP_AJ_T0051360.1 MGP_AJ_G0024953.1 mouse_genomes_project 19 18242185 18246857 + protein_coding retained_intron MGP_AJ_T0051361.1 MGP_AJ_G0024953.1 mouse_genomes_project 19 18242245 18257225 + protein_coding retained_intron MGP_AJ_T0013378.1 MGP_AJ_G0011473.1 mouse_genomes_project 19 8228639 8229696 - processed_pseudogene processed_pseudogene MGP_AJ_T0017700.1 MGP_AJ_G0015357.1 mouse_genomes_project 19 8311976 8327708 - BE692007 processed_transcript antisense MGP_AJ_T0017701.1 MGP_AJ_G0015357.1 mouse_genomes_project 19 8322983 8327709 - BE692007 processed_transcript antisense MGP_AJ_T0017702.1 MGP_AJ_G0015357.1 mouse_genomes_project 19 8323101 8327666 - BE692007 processed_transcript retained_intron MGP_AJ_T0007110.1 MGP_AJ_G0005832.1 mouse_genomes_project 19 43752036 43755290 + Gm26792 lincRNA lincRNA MGP_AJ_T0050332.1 MGP_AJ_G0024602.1 mouse_genomes_project 19 735095 749788 + MGP_AJ_P0050332 Aldh3b3 protein_coding protein_coding MGP_AJ_T0050333.1 MGP_AJ_G0024602.1 mouse_genomes_project 19 735256 749787 + MGP_AJ_P0050333 Aldh3b3 protein_coding nonsense_mediated_decay MGP_AJ_T0050334.1 MGP_AJ_G0024602.1 mouse_genomes_project 19 743597 748123 + MGP_AJ_P0050334 Aldh3b3 protein_coding protein_coding MGP_AJ_T0010286.1 MGP_AJ_G0008408.1 mouse_genomes_project 19 3433151 3433277 + Gm26460 miRNA miRNA MGP_AJ_T0051853.1 MGP_AJ_G0025132.1 mouse_genomes_project 19 41050781 41097353 + MGP_AJ_P0051853 Entpd7 protein_coding protein_coding MGP_AJ_T0051854.1 MGP_AJ_G0025132.1 mouse_genomes_project 19 41050918 41053957 + Entpd7 protein_coding retained_intron MGP_AJ_T0051855.1 MGP_AJ_G0025132.1 mouse_genomes_project 19 41050949 41086083 + Entpd7 protein_coding retained_intron MGP_AJ_T0051856.1 MGP_AJ_G0025132.1 mouse_genomes_project 19 41073477 41078272 + Entpd7 protein_coding retained_intron MGP_AJ_T0051857.1 MGP_AJ_G0025132.1 mouse_genomes_project 19 41089905 41091674 + Entpd7 protein_coding retained_intron MGP_AJ_T0007093.1 MGP_AJ_G0005819.1 mouse_genomes_project 19 32211023 32215043 - Gm5248 lincRNA lincRNA MGP_AJ_T0001017.1 MGP_AJ_G0000948.1 mouse_genomes_project 19 34649090 34650838 - TEC TEC MGP_AJ_T0051291.1 MGP_AJ_G0024920.1 mouse_genomes_project 19 10570944 10571895 + MGP_AJ_P0051291 Olfr1490 protein_coding protein_coding MGP_AJ_T0013398.1 MGP_AJ_G0011493.1 mouse_genomes_project 19 49270338 49270715 + processed_pseudogene processed_pseudogene MGP_AJ_T0050486.1 MGP_AJ_G0024644.1 mouse_genomes_project 19 1680668 1683004 - Actn3 protein_coding processed_transcript MGP_AJ_T0050487.1 MGP_AJ_G0024644.1 mouse_genomes_project 19 1680668 1697112 - MGP_AJ_P0050487 Actn3 protein_coding protein_coding MGP_AJ_T0050782.1 MGP_AJ_G0024728.1 mouse_genomes_project 19 3250164 3265114 + MGP_AJ_P0050782 Pygm protein_coding protein_coding MGP_AJ_T0050783.1 MGP_AJ_G0024728.1 mouse_genomes_project 19 3250180 3265103 + MGP_AJ_P0050783 Pygm protein_coding protein_coding MGP_AJ_T0050784.1 MGP_AJ_G0024728.1 mouse_genomes_project 19 3258483 3259957 + Pygm protein_coding retained_intron MGP_AJ_T0050785.1 MGP_AJ_G0024728.1 mouse_genomes_project 19 3264149 3264946 + Pygm protein_coding retained_intron MGP_AJ_T0051227.1 MGP_AJ_G0024871.1 mouse_genomes_project 19 9007334 9008382 - MGP_AJ_P0051227 Olfr76 protein_coding protein_coding MGP_AJ_T0099736.1 MGP_AJ_G0037702.1 mouse_genomes_project 19 42342097 42342204 + Gm25482 snRNA snRNA MGP_AJ_T0010325.1 MGP_AJ_G0008447.1 mouse_genomes_project 19 56502050 56502137 - Mir3086 miRNA miRNA MGP_AJ_T0051328.1 MGP_AJ_G0024942.1 mouse_genomes_project 19 14369151 14780221 - MGP_AJ_P0051328 Pcsk5 protein_coding protein_coding MGP_AJ_T0051329.1 MGP_AJ_G0024942.1 mouse_genomes_project 19 14499829 14779741 - MGP_AJ_P0051329 Pcsk5 protein_coding protein_coding MGP_AJ_T0017718.1 MGP_AJ_G0015364.1 mouse_genomes_project 19 43681546 43684677 - Gm16726 processed_transcript processed_transcript MGP_AJ_T0007098.1 MGP_AJ_G0005823.1 mouse_genomes_project 19 37865119 37870546 + Gm27042 lincRNA lincRNA MGP_AJ_T0051330.1 MGP_AJ_G0024943.1 mouse_genomes_project 19 15528422 15580542 - MGP_AJ_P0051330 Ostf1 protein_coding protein_coding MGP_AJ_T0051331.1 MGP_AJ_G0024943.1 mouse_genomes_project 19 15530086 15580493 - Ostf1 protein_coding retained_intron MGP_AJ_T0051332.1 MGP_AJ_G0024943.1 mouse_genomes_project 19 15542693 15580471 - Ostf1 protein_coding retained_intron MGP_AJ_T0051829.1 MGP_AJ_G0025124.1 mouse_genomes_project 19 39922730 39941426 - MGP_AJ_P0051829 Loxl4 protein_coding protein_coding MGP_AJ_T0051830.1 MGP_AJ_G0025124.1 mouse_genomes_project 19 39923854 39941426 - MGP_AJ_P0051830 Loxl4 protein_coding protein_coding MGP_AJ_T0051831.1 MGP_AJ_G0025124.1 mouse_genomes_project 19 39924082 39937257 - MGP_AJ_P0051831 Loxl4 protein_coding protein_coding MGP_AJ_T0051832.1 MGP_AJ_G0025124.1 mouse_genomes_project 19 39930301 39932080 - Loxl4 protein_coding processed_transcript MGP_AJ_T0051833.1 MGP_AJ_G0025124.1 mouse_genomes_project 19 39936355 39941385 - MGP_AJ_P0051833 Loxl4 protein_coding protein_coding MGP_AJ_T0099731.1 MGP_AJ_G0037697.1 mouse_genomes_project 19 33574525 33574631 - Gm23170 snRNA snRNA MGP_AJ_T0013393.1 MGP_AJ_G0011488.1 mouse_genomes_project 19 29569671 29600239 + processed_pseudogene processed_pseudogene MGP_AJ_T0051957.1 MGP_AJ_G0025168.1 mouse_genomes_project 19 43140926 43147013 - MGP_AJ_P0051957 Fgf8 protein_coding protein_coding MGP_AJ_T0051958.1 MGP_AJ_G0025168.1 mouse_genomes_project 19 43140941 43147054 - MGP_AJ_P0051958 Fgf8 protein_coding protein_coding MGP_AJ_T0051959.1 MGP_AJ_G0025168.1 mouse_genomes_project 19 43140946 43147012 - MGP_AJ_P0051959 Fgf8 protein_coding protein_coding MGP_AJ_T0051960.1 MGP_AJ_G0025168.1 mouse_genomes_project 19 43141064 43146997 - MGP_AJ_P0051960 Fgf8 protein_coding protein_coding MGP_AJ_T0051961.1 MGP_AJ_G0025168.1 mouse_genomes_project 19 43141099 43146813 - MGP_AJ_P0051961 Fgf8 protein_coding protein_coding MGP_AJ_T0051962.1 MGP_AJ_G0025168.1 mouse_genomes_project 19 43141118 43146813 - MGP_AJ_P0051962 Fgf8 protein_coding protein_coding MGP_AJ_T0051320.1 MGP_AJ_G0024939.1 mouse_genomes_project 19 13892707 14160796 + MGP_AJ_P0051320 Prune2 protein_coding protein_coding MGP_AJ_T0051321.1 MGP_AJ_G0024939.1 mouse_genomes_project 19 14072186 14160805 + MGP_AJ_P0051321 Prune2 protein_coding unknown_likely_coding MGP_AJ_T0050657.1 MGP_AJ_G0024708.1 mouse_genomes_project 19 2921005 2926740 - MGP_AJ_P0050657 Tm7sf2 protein_coding protein_coding MGP_AJ_T0050658.1 MGP_AJ_G0024708.1 mouse_genomes_project 19 2921005 2926701 - MGP_AJ_P0050658 Tm7sf2 protein_coding protein_coding MGP_AJ_T0050659.1 MGP_AJ_G0024708.1 mouse_genomes_project 19 2921006 2926740 - MGP_AJ_P0050659 Tm7sf2 protein_coding protein_coding MGP_AJ_T0050660.1 MGP_AJ_G0024708.1 mouse_genomes_project 19 2921085 2926701 - MGP_AJ_P0050660 Tm7sf2 protein_coding nonsense_mediated_decay MGP_AJ_T0050661.1 MGP_AJ_G0024708.1 mouse_genomes_project 19 2921162 2926706 - MGP_AJ_P0050661 Tm7sf2 protein_coding protein_coding MGP_AJ_T0050662.1 MGP_AJ_G0024708.1 mouse_genomes_project 19 2922006 2926683 - MGP_AJ_P0050662 Tm7sf2 protein_coding protein_coding MGP_AJ_T0050663.1 MGP_AJ_G0024708.1 mouse_genomes_project 19 2922277 2926706 - MGP_AJ_P0050663 Tm7sf2 protein_coding protein_coding MGP_AJ_T0050664.1 MGP_AJ_G0024708.1 mouse_genomes_project 19 2924422 2926674 - Tm7sf2 protein_coding retained_intron MGP_AJ_T0050665.1 MGP_AJ_G0024708.1 mouse_genomes_project 19 2925024 2926748 - Tm7sf2 protein_coding retained_intron MGP_AJ_T0050666.1 MGP_AJ_G0024708.1 mouse_genomes_project 19 2925041 2926765 - Tm7sf2 protein_coding retained_intron MGP_AJ_T0050667.1 MGP_AJ_G0024708.1 mouse_genomes_project 19 2925080 2925990 - Tm7sf2 protein_coding retained_intron MGP_AJ_T0050668.1 MGP_AJ_G0024708.1 mouse_genomes_project 19 2925082 2926753 - MGP_AJ_P0050668 Tm7sf2 protein_coding protein_coding MGP_AJ_T0050669.1 MGP_AJ_G0024708.1 mouse_genomes_project 19 2925474 2926459 - Tm7sf2 protein_coding retained_intron MGP_AJ_T0050670.1 MGP_AJ_G0024708.1 mouse_genomes_project 19 2926060 2927271 - MGP_AJ_P0050670 Tm7sf2 protein_coding protein_coding MGP_AJ_T0051356.1 MGP_AJ_G0024952.1 mouse_genomes_project 19 17746592 17915342 - MGP_AJ_P0051356 Tmc1 protein_coding protein_coding MGP_AJ_T0017703.1 MGP_AJ_G0015358.1 mouse_genomes_project 19 9418219 9427098 - A330040F15Rik processed_transcript processed_transcript MGP_AJ_T0051280.1 MGP_AJ_G0024909.1 mouse_genomes_project 19 10205700 10206633 + MGP_AJ_P0051280 Olfr1466 protein_coding protein_coding MGP_AJ_T0051046.1 MGP_AJ_G0024798.1 mouse_genomes_project 19 6064273 6090325 - MGP_AJ_P0051046 Asrgl1 protein_coding protein_coding MGP_AJ_T0051047.1 MGP_AJ_G0024798.1 mouse_genomes_project 19 6087152 6090220 - Asrgl1 protein_coding processed_transcript MGP_AJ_T0051594.1 MGP_AJ_G0025038.1 mouse_genomes_project 19 31719516 31740691 - MGP_AJ_P0051594 Ifit1bl1 protein_coding protein_coding MGP_AJ_T0051595.1 MGP_AJ_G0025038.1 mouse_genomes_project 19 31719519 31739741 - MGP_AJ_P0051595 Ifit1bl1 protein_coding protein_coding MGP_AJ_T0013380.1 MGP_AJ_G0011475.1 mouse_genomes_project 19 9404166 9404758 - processed_pseudogene processed_pseudogene MGP_AJ_T0051286.1 MGP_AJ_G0024915.1 mouse_genomes_project 19 10367369 10368542 - MGP_AJ_P0051286 protein_coding protein_coding MGP_AJ_T0050516.1 MGP_AJ_G0024657.1 mouse_genomes_project 19 1912804 1918547 + MGP_AJ_P0050516 Yif1a protein_coding protein_coding MGP_AJ_T0050378.1 MGP_AJ_G0024613.1 mouse_genomes_project 19 916442 927793 - MGP_AJ_P0050378 Aip protein_coding protein_coding MGP_AJ_T0050379.1 MGP_AJ_G0024613.1 mouse_genomes_project 19 916460 923558 - MGP_AJ_P0050379 Aip protein_coding protein_coding MGP_AJ_T0050380.1 MGP_AJ_G0024613.1 mouse_genomes_project 19 917443 927783 - MGP_AJ_P0050380 Aip protein_coding protein_coding MGP_AJ_T0050381.1 MGP_AJ_G0024613.1 mouse_genomes_project 19 920252 926547 - Aip protein_coding processed_transcript MGP_AJ_T0050382.1 MGP_AJ_G0024613.1 mouse_genomes_project 19 922915 927725 - Aip protein_coding retained_intron MGP_AJ_T0050414.1 MGP_AJ_G0024625.1 mouse_genomes_project 19 1064620 1072125 - MGP_AJ_P0050414 Ssh3 protein_coding protein_coding MGP_AJ_T0050415.1 MGP_AJ_G0024625.1 mouse_genomes_project 19 1064625 1072125 - MGP_AJ_P0050415 Ssh3 protein_coding protein_coding MGP_AJ_T0050612.1 MGP_AJ_G0024692.1 mouse_genomes_project 19 2568129 2571754 - MGP_AJ_P0050612 Sssca1 protein_coding nonsense_mediated_decay MGP_AJ_T0050613.1 MGP_AJ_G0024692.1 mouse_genomes_project 19 2570343 2571762 - MGP_AJ_P0050613 Sssca1 protein_coding protein_coding MGP_AJ_T0050614.1 MGP_AJ_G0024692.1 mouse_genomes_project 19 2570347 2571701 - Sssca1 protein_coding retained_intron MGP_AJ_T0050615.1 MGP_AJ_G0024692.1 mouse_genomes_project 19 2570347 2571773 - MGP_AJ_P0050615 Sssca1 protein_coding protein_coding MGP_AJ_T0050616.1 MGP_AJ_G0024692.1 mouse_genomes_project 19 2570451 2571516 - MGP_AJ_P0050616 Sssca1 protein_coding protein_coding MGP_AJ_T0050617.1 MGP_AJ_G0024692.1 mouse_genomes_project 19 2570932 2571740 - Sssca1 protein_coding retained_intron MGP_AJ_T0051590.1 MGP_AJ_G0025036.1 mouse_genomes_project 19 31618563 31653715 - MGP_AJ_P0051590 Lipa protein_coding protein_coding MGP_AJ_T0051591.1 MGP_AJ_G0025036.1 mouse_genomes_project 19 31618563 31653715 - MGP_AJ_P0051591 Lipa protein_coding protein_coding MGP_AJ_T0051472.1 MGP_AJ_G0024991.1 mouse_genomes_project 19 26008671 26011532 + MGP_AJ_P0051472 Plpp6 protein_coding protein_coding MGP_AJ_T0051229.1 MGP_AJ_G0024873.1 mouse_genomes_project 19 9082949 9085320 + MGP_AJ_P0051229 protein_coding protein_coding MGP_AJ_T0010316.1 MGP_AJ_G0008438.1 mouse_genomes_project 19 43759439 43759548 + Mir146b miRNA miRNA MGP_AJ_T0013391.1 MGP_AJ_G0011486.1 mouse_genomes_project 19 25855572 25856369 - processed_pseudogene processed_pseudogene MGP_AJ_T0051238.1 MGP_AJ_G0024882.1 mouse_genomes_project 19 9302938 9338716 - MGP_AJ_P0051238 Dtx4 protein_coding protein_coding MGP_AJ_T0051373.1 MGP_AJ_G0024957.1 mouse_genomes_project 19 18636761 18668198 + MGP_AJ_P0051373 Abhd17b protein_coding protein_coding MGP_AJ_T0050917.1 MGP_AJ_G0024762.1 mouse_genomes_project 19 4392391 4402922 - MGP_AJ_P0050917 Lgals12 protein_coding protein_coding MGP_AJ_T0050918.1 MGP_AJ_G0024762.1 mouse_genomes_project 19 4392393 4402907 - MGP_AJ_P0050918 Lgals12 protein_coding protein_coding MGP_AJ_T0050919.1 MGP_AJ_G0024762.1 mouse_genomes_project 19 4392446 4402832 - MGP_AJ_P0050919 Lgals12 protein_coding protein_coding MGP_AJ_T0051433.1 MGP_AJ_G0024983.1 mouse_genomes_project 19 23906803 23909506 + MGP_AJ_P0051433 Gm815 protein_coding protein_coding MGP_AJ_T0013369.1 MGP_AJ_G0011464.1 mouse_genomes_project 19 4381 5894 + processed_pseudogene processed_pseudogene MGP_AJ_T0051577.1 MGP_AJ_G0025030.1 mouse_genomes_project 19 31238864 31259840 + MGP_AJ_P0051577 Lipm protein_coding protein_coding MGP_AJ_T0003866.1 MGP_AJ_G0003458.1 mouse_genomes_project 19 35523999 35538078 - Gm42723 antisense antisense MGP_AJ_T0003867.1 MGP_AJ_G0003458.1 mouse_genomes_project 19 35537019 35538063 - Gm42723 antisense antisense MGP_AJ_T0052243.1 MGP_AJ_G0025249.1 mouse_genomes_project 19 54919426 54948909 + MGP_AJ_P0052243 Fam160b1 protein_coding protein_coding MGP_AJ_T0050992.1 MGP_AJ_G0024779.1 mouse_genomes_project 19 5761533 5771783 - MGP_AJ_P0050992 Ttc9c protein_coding protein_coding MGP_AJ_T0050993.1 MGP_AJ_G0024779.1 mouse_genomes_project 19 5763593 5771374 - MGP_AJ_P0050993 Ttc9c protein_coding protein_coding MGP_AJ_T0050994.1 MGP_AJ_G0024779.1 mouse_genomes_project 19 5763753 5771744 - MGP_AJ_P0050994 Ttc9c protein_coding protein_coding MGP_AJ_T0050995.1 MGP_AJ_G0024779.1 mouse_genomes_project 19 5770746 5771682 - Ttc9c protein_coding retained_intron MGP_AJ_T0003842.1 MGP_AJ_G0003442.1 mouse_genomes_project 19 779106 779581 - Gm16312 antisense antisense MGP_AJ_T0017707.1 MGP_AJ_G0015361.1 mouse_genomes_project 19 25030693 25032190 + Gm20407 processed_transcript processed_transcript MGP_AJ_T0007057.1 MGP_AJ_G0005796.1 mouse_genomes_project 19 971347 976066 + Gm17552 lincRNA lincRNA MGP_AJ_T0050530.1 MGP_AJ_G0024663.1 mouse_genomes_project 19 2128009 2138321 + MGP_AJ_P0050530 Gal3st3 protein_coding protein_coding MGP_AJ_T0051559.1 MGP_AJ_G0025019.1 mouse_genomes_project 19 29756207 29797179 - MGP_AJ_P0051559 Atad1 protein_coding protein_coding MGP_AJ_T0007089.1 MGP_AJ_G0005816.1 mouse_genomes_project 19 29475017 29476985 + 2700046G09Rik lincRNA lincRNA MGP_AJ_T0051736.1 MGP_AJ_G0025091.1 mouse_genomes_project 19 37888041 37889818 + Entpd1 protein_coding processed_transcript MGP_AJ_T0051737.1 MGP_AJ_G0025091.1 mouse_genomes_project 19 37888064 37891391 + Entpd1 protein_coding processed_transcript MGP_AJ_T0051738.1 MGP_AJ_G0025091.1 mouse_genomes_project 19 37888072 38034167 + MGP_AJ_P0051738 Entpd1 protein_coding protein_coding MGP_AJ_T0051739.1 MGP_AJ_G0025091.1 mouse_genomes_project 19 37937357 38035975 + MGP_AJ_P0051739 Entpd1 protein_coding protein_coding MGP_AJ_T0051740.1 MGP_AJ_G0025091.1 mouse_genomes_project 19 37937386 38019416 + MGP_AJ_P0051740 Entpd1 protein_coding protein_coding MGP_AJ_T0051741.1 MGP_AJ_G0025091.1 mouse_genomes_project 19 37937431 38033456 + MGP_AJ_P0051741 Entpd1 protein_coding nonsense_mediated_decay MGP_AJ_T0051742.1 MGP_AJ_G0025091.1 mouse_genomes_project 19 37937786 37993072 + Entpd1 protein_coding processed_transcript MGP_AJ_T0051743.1 MGP_AJ_G0025091.1 mouse_genomes_project 19 37938080 38017499 + Entpd1 protein_coding processed_transcript MGP_AJ_T0051744.1 MGP_AJ_G0025091.1 mouse_genomes_project 19 37959425 38017595 + Entpd1 protein_coding processed_transcript MGP_AJ_T0051745.1 MGP_AJ_G0025091.1 mouse_genomes_project 19 38020439 38034128 + MGP_AJ_P0051745 Entpd1 protein_coding protein_coding MGP_AJ_T0051746.1 MGP_AJ_G0025091.1 mouse_genomes_project 19 38030556 38031238 + Entpd1 protein_coding processed_transcript MGP_AJ_T0051081.1 MGP_AJ_G0024811.1 mouse_genomes_project 19 7197073 7262053 + MGP_AJ_P0051081 Syt7 protein_coding protein_coding MGP_AJ_T0051082.1 MGP_AJ_G0024811.1 mouse_genomes_project 19 7197073 7262053 + MGP_AJ_P0051082 Syt7 protein_coding protein_coding MGP_AJ_T0051083.1 MGP_AJ_G0024811.1 mouse_genomes_project 19 7197073 7262053 + MGP_AJ_P0051083 Syt7 protein_coding protein_coding MGP_AJ_T0051084.1 MGP_AJ_G0024811.1 mouse_genomes_project 19 7197464 7231985 + MGP_AJ_P0051084 Syt7 protein_coding unknown_likely_coding MGP_AJ_T0051473.1 MGP_AJ_G0024992.1 mouse_genomes_project 19 26035681 26063264 + MGP_AJ_P0051473 Cdc37l1 protein_coding protein_coding MGP_AJ_T0051474.1 MGP_AJ_G0024992.1 mouse_genomes_project 19 26035725 26058497 + MGP_AJ_P0051474 Cdc37l1 protein_coding unknown_likely_coding MGP_AJ_T0007101.1 MGP_AJ_G0005826.1 mouse_genomes_project 19 42083948 42086849 - Gm26644 lincRNA lincRNA MGP_AJ_T0101002.1 MGP_AJ_G0038968.1 mouse_genomes_project 19 41488303 41488449 - Gm24336 snoRNA snoRNA MGP_AJ_T0051415.1 MGP_AJ_G0024981.1 mouse_genomes_project 19 22681936 22688525 + MGP_AJ_P0051415 Dmrt2 protein_coding protein_coding MGP_AJ_T0098646.1 MGP_AJ_G0036630.1 mouse_genomes_project 19 48305633 48305670 + Gm25659 rRNA rRNA MGP_AJ_T0051396.1 MGP_AJ_G0024971.1 mouse_genomes_project 19 21278241 21426862 - MGP_AJ_P0051396 Pip5k1b protein_coding unknown_likely_coding MGP_AJ_T0051397.1 MGP_AJ_G0024971.1 mouse_genomes_project 19 21417112 21538895 - Pip5k1b protein_coding processed_transcript MGP_AJ_T0051765.1 MGP_AJ_G0025103.1 mouse_genomes_project 19 38907915 39054435 - MGP_AJ_P0051765 Slit1 protein_coding protein_coding MGP_AJ_T0051766.1 MGP_AJ_G0025103.1 mouse_genomes_project 19 38907917 39054608 - MGP_AJ_P0051766 Slit1 protein_coding protein_coding MGP_AJ_T0051767.1 MGP_AJ_G0025103.1 mouse_genomes_project 19 38908109 39054435 - MGP_AJ_P0051767 Slit1 protein_coding protein_coding MGP_AJ_T0051768.1 MGP_AJ_G0025103.1 mouse_genomes_project 19 38911834 38916751 - Slit1 protein_coding retained_intron MGP_AJ_T0051769.1 MGP_AJ_G0025103.1 mouse_genomes_project 19 38955083 39054429 - MGP_AJ_P0051769 Slit1 protein_coding protein_coding MGP_AJ_T0010327.1 MGP_AJ_G0008449.1 mouse_genomes_project 19 58377529 58377598 - Mir3084-2 miRNA miRNA MGP_AJ_T0050511.1 MGP_AJ_G0024656.1 mouse_genomes_project 19 1895292 1896566 - Tmem151a protein_coding processed_transcript MGP_AJ_T0050512.1 MGP_AJ_G0024656.1 mouse_genomes_project 19 1895468 1909760 - MGP_AJ_P0050512 Tmem151a protein_coding protein_coding MGP_AJ_T0050513.1 MGP_AJ_G0024656.1 mouse_genomes_project 19 1896287 1909760 - MGP_AJ_P0050513 Tmem151a protein_coding protein_coding MGP_AJ_T0050514.1 MGP_AJ_G0024656.1 mouse_genomes_project 19 1903587 1909804 - MGP_AJ_P0050514 Tmem151a protein_coding protein_coding MGP_AJ_T0050515.1 MGP_AJ_G0024656.1 mouse_genomes_project 19 1907159 1909154 - Tmem151a protein_coding processed_transcript MGP_AJ_T0010293.1 MGP_AJ_G0008415.1 mouse_genomes_project 19 6998257 6998322 + Mir6993 miRNA miRNA MGP_AJ_T0099720.1 MGP_AJ_G0037686.1 mouse_genomes_project 19 9498147 9498254 + Gm24521 snRNA snRNA MGP_AJ_T0050483.1 MGP_AJ_G0024641.1 mouse_genomes_project 19 1641785 1655653 - MGP_AJ_P0050483 Ccs protein_coding protein_coding MGP_AJ_T0051317.1 MGP_AJ_G0024937.1 mouse_genomes_project 19 13548290 13711472 - MGP_AJ_P0051317 Vps13a protein_coding protein_coding MGP_AJ_T0051318.1 MGP_AJ_G0024937.1 mouse_genomes_project 19 13564046 13711419 - MGP_AJ_P0051318 Vps13a protein_coding unknown_likely_coding MGP_AJ_T0050406.1 MGP_AJ_G0024620.1 mouse_genomes_project 19 986137 992832 - MGP_AJ_P0050406 Tbc1d10c protein_coding protein_coding MGP_AJ_T0051893.1 MGP_AJ_G0025141.1 mouse_genomes_project 19 41482968 41509829 - MGP_AJ_P0051893 Cwf19l1 protein_coding protein_coding MGP_AJ_T0050346.1 MGP_AJ_G0024608.1 mouse_genomes_project 19 786543 787059 - Ndufv1 protein_coding retained_intron MGP_AJ_T0050347.1 MGP_AJ_G0024608.1 mouse_genomes_project 19 786544 791663 - MGP_AJ_P0050347 Ndufv1 protein_coding protein_coding MGP_AJ_T0050348.1 MGP_AJ_G0024608.1 mouse_genomes_project 19 786602 791714 - MGP_AJ_P0050348 Ndufv1 protein_coding protein_coding MGP_AJ_T0050349.1 MGP_AJ_G0024608.1 mouse_genomes_project 19 787335 788888 - Ndufv1 protein_coding retained_intron MGP_AJ_T0050350.1 MGP_AJ_G0024608.1 mouse_genomes_project 19 787405 788181 - Ndufv1 protein_coding retained_intron MGP_AJ_T0050351.1 MGP_AJ_G0024608.1 mouse_genomes_project 19 787793 791745 - Ndufv1 protein_coding retained_intron MGP_AJ_T0050352.1 MGP_AJ_G0024608.1 mouse_genomes_project 19 788407 791749 - MGP_AJ_P0050352 Ndufv1 protein_coding protein_coding MGP_AJ_T0050353.1 MGP_AJ_G0024608.1 mouse_genomes_project 19 788458 791706 - MGP_AJ_P0050353 Ndufv1 protein_coding nonsense_mediated_decay MGP_AJ_T0050354.1 MGP_AJ_G0024608.1 mouse_genomes_project 19 788502 791800 - MGP_AJ_P0050354 Ndufv1 protein_coding protein_coding MGP_AJ_T0050355.1 MGP_AJ_G0024608.1 mouse_genomes_project 19 789041 791702 - Ndufv1 protein_coding retained_intron MGP_AJ_T0051271.1 MGP_AJ_G0024900.1 mouse_genomes_project 19 9878689 9879729 - MGP_AJ_P0051271 Olfr1453 protein_coding protein_coding MGP_AJ_T0051578.1 MGP_AJ_G0025031.1 mouse_genomes_project 19 31259701 31295152 - MGP_AJ_P0051578 Ankrd22 protein_coding protein_coding MGP_AJ_T0051579.1 MGP_AJ_G0025031.1 mouse_genomes_project 19 31260077 31290214 - Ankrd22 protein_coding processed_transcript MGP_AJ_T0051580.1 MGP_AJ_G0025031.1 mouse_genomes_project 19 31260077 31266815 - Ankrd22 protein_coding processed_transcript MGP_AJ_T0051249.1 MGP_AJ_G0024886.1 mouse_genomes_project 19 9507836 9508901 + MGP_AJ_P0051249 Olfr1442 protein_coding protein_coding MGP_AJ_T0050485.1 MGP_AJ_G0024643.1 mouse_genomes_project 19 1674574 1680358 + MGP_AJ_P0050485 Ctsf protein_coding protein_coding MGP_AJ_T0099733.1 MGP_AJ_G0037699.1 mouse_genomes_project 19 34679991 34680097 + Gm23026 snRNA snRNA MGP_AJ_T0010307.1 MGP_AJ_G0008429.1 mouse_genomes_project 19 32442598 32442663 - Gm23075 miRNA miRNA MGP_AJ_T0017670.1 MGP_AJ_G0015351.1 mouse_genomes_project 19 3133586 3141247 - Gm14963 processed_transcript processed_transcript MGP_AJ_T0051514.1 MGP_AJ_G0025006.1 mouse_genomes_project 19 26999072 27036082 + MGP_AJ_P0051514 Il33 protein_coding protein_coding MGP_AJ_T0051515.1 MGP_AJ_G0025006.1 mouse_genomes_project 19 26999073 27026764 + MGP_AJ_P0051515 Il33 protein_coding protein_coding MGP_AJ_T0051516.1 MGP_AJ_G0025006.1 mouse_genomes_project 19 26999090 27034339 + MGP_AJ_P0051516 Il33 protein_coding protein_coding MGP_AJ_T0051517.1 MGP_AJ_G0025006.1 mouse_genomes_project 19 27020476 27036068 + MGP_AJ_P0051517 Il33 protein_coding protein_coding MGP_AJ_T0051518.1 MGP_AJ_G0025006.1 mouse_genomes_project 19 27026502 27027555 + MGP_AJ_P0051518 Il33 protein_coding protein_coding MGP_AJ_T0010276.1 MGP_AJ_G0008398.1 mouse_genomes_project 19 54072 54136 + Mir6984 miRNA miRNA MGP_AJ_T0051085.1 MGP_AJ_G0024812.1 mouse_genomes_project 19 7264239 7266307 - MGP_AJ_P0051085 Lrrc10b protein_coding protein_coding MGP_AJ_T0051666.1 MGP_AJ_G0025063.1 mouse_genomes_project 19 35314908 35332509 + MGP_AJ_P0051666 Ffar4 protein_coding protein_coding MGP_AJ_T0010323.1 MGP_AJ_G0008445.1 mouse_genomes_project 19 52731403 52731460 + Mir6715 miRNA miRNA MGP_AJ_T0017649.1 MGP_AJ_G0015348.1 mouse_genomes_project 19 927868 934191 + Tmem134 processed_transcript processed_transcript MGP_AJ_T0017650.1 MGP_AJ_G0015348.1 mouse_genomes_project 19 927893 933350 + Tmem134 processed_transcript processed_transcript MGP_AJ_T0017651.1 MGP_AJ_G0015348.1 mouse_genomes_project 19 927893 933632 + Tmem134 processed_transcript retained_intron MGP_AJ_T0017652.1 MGP_AJ_G0015348.1 mouse_genomes_project 19 927893 933633 + Tmem134 processed_transcript processed_transcript MGP_AJ_T0017653.1 MGP_AJ_G0015348.1 mouse_genomes_project 19 927893 933633 + Tmem134 processed_transcript processed_transcript MGP_AJ_T0017654.1 MGP_AJ_G0015348.1 mouse_genomes_project 19 927893 933633 + Tmem134 processed_transcript processed_transcript MGP_AJ_T0017655.1 MGP_AJ_G0015348.1 mouse_genomes_project 19 927894 934191 + Tmem134 processed_transcript retained_intron MGP_AJ_T0017656.1 MGP_AJ_G0015348.1 mouse_genomes_project 19 927894 934213 + Tmem134 processed_transcript processed_transcript MGP_AJ_T0017657.1 MGP_AJ_G0015348.1 mouse_genomes_project 19 927894 934211 + Tmem134 processed_transcript processed_transcript MGP_AJ_T0017658.1 MGP_AJ_G0015348.1 mouse_genomes_project 19 927909 933633 + Tmem134 processed_transcript processed_transcript MGP_AJ_T0017659.1 MGP_AJ_G0015348.1 mouse_genomes_project 19 927913 933641 + Tmem134 processed_transcript processed_transcript MGP_AJ_T0017660.1 MGP_AJ_G0015348.1 mouse_genomes_project 19 927921 933636 + Tmem134 processed_transcript processed_transcript MGP_AJ_T0017661.1 MGP_AJ_G0015348.1 mouse_genomes_project 19 927923 929673 + Tmem134 processed_transcript processed_transcript MGP_AJ_T0017662.1 MGP_AJ_G0015348.1 mouse_genomes_project 19 927923 933633 + Tmem134 processed_transcript processed_transcript MGP_AJ_T0017663.1 MGP_AJ_G0015348.1 mouse_genomes_project 19 927963 933638 + Tmem134 processed_transcript processed_transcript MGP_AJ_T0017664.1 MGP_AJ_G0015348.1 mouse_genomes_project 19 929505 933163 + Tmem134 processed_transcript processed_transcript MGP_AJ_T0051231.1 MGP_AJ_G0024875.1 mouse_genomes_project 19 9097579 9101775 + MGP_AJ_P0051231 Olfr1434 protein_coding protein_coding MGP_AJ_T0052287.1 MGP_AJ_G0025272.1 mouse_genomes_project 19 58416580 58440631 + MGP_AJ_P0052287 Fam45a protein_coding protein_coding MGP_AJ_T0052288.1 MGP_AJ_G0025272.1 mouse_genomes_project 19 58416607 58436890 + MGP_AJ_P0052288 Fam45a protein_coding protein_coding MGP_AJ_T0052289.1 MGP_AJ_G0025272.1 mouse_genomes_project 19 58416613 58441855 + MGP_AJ_P0052289 Fam45a protein_coding protein_coding MGP_AJ_T0052290.1 MGP_AJ_G0025272.1 mouse_genomes_project 19 58416618 58423342 + Fam45a protein_coding retained_intron MGP_AJ_T0052291.1 MGP_AJ_G0025272.1 mouse_genomes_project 19 58416633 58427487 + MGP_AJ_P0052291 Fam45a protein_coding nonsense_mediated_decay MGP_AJ_T0052292.1 MGP_AJ_G0025272.1 mouse_genomes_project 19 58417058 58419682 + Fam45a protein_coding processed_transcript MGP_AJ_T0052293.1 MGP_AJ_G0025272.1 mouse_genomes_project 19 58436575 58440742 + Fam45a protein_coding retained_intron MGP_AJ_T0051028.1 MGP_AJ_G0024792.1 mouse_genomes_project 19 5882529 5894303 + MGP_AJ_P0051028 Eml3 protein_coding protein_coding MGP_AJ_T0051263.1 MGP_AJ_G0024892.1 mouse_genomes_project 19 9701573 9702603 + MGP_AJ_P0051263 Olfr1444 protein_coding protein_coding MGP_AJ_T0100982.1 MGP_AJ_G0038948.1 mouse_genomes_project 19 5676563 5676639 + Gm24453 snoRNA snoRNA MGP_AJ_T0050871.1 MGP_AJ_G0024752.1 mouse_genomes_project 19 3965859 3973783 - MGP_AJ_P0050871 Otub1 protein_coding protein_coding MGP_AJ_T0050872.1 MGP_AJ_G0024752.1 mouse_genomes_project 19 3965867 3973701 - MGP_AJ_P0050872 Otub1 protein_coding protein_coding MGP_AJ_T0050873.1 MGP_AJ_G0024752.1 mouse_genomes_project 19 3967192 3968117 - Otub1 protein_coding retained_intron MGP_AJ_T0050874.1 MGP_AJ_G0024752.1 mouse_genomes_project 19 3967363 3973242 - MGP_AJ_P0050874 Otub1 protein_coding protein_coding MGP_AJ_T0050875.1 MGP_AJ_G0024752.1 mouse_genomes_project 19 3967393 3971886 - Otub1 protein_coding retained_intron MGP_AJ_T0051144.1 MGP_AJ_G0024836.1 mouse_genomes_project 19 7893134 7907866 - MGP_AJ_P0051144 Ms4a8a protein_coding protein_coding MGP_AJ_T0051145.1 MGP_AJ_G0024836.1 mouse_genomes_project 19 7901162 7907866 - Ms4a8a protein_coding retained_intron MGP_AJ_T0050629.1 MGP_AJ_G0024698.1 mouse_genomes_project 19 2740124 2757355 - MGP_AJ_P0050629 Dpf2 protein_coding protein_coding MGP_AJ_T0050630.1 MGP_AJ_G0024698.1 mouse_genomes_project 19 2740995 2757276 - MGP_AJ_P0050630 Dpf2 protein_coding protein_coding MGP_AJ_T0050631.1 MGP_AJ_G0024698.1 mouse_genomes_project 19 2740995 2750759 - MGP_AJ_P0050631 Dpf2 protein_coding nonsense_mediated_decay MGP_AJ_T0050632.1 MGP_AJ_G0024698.1 mouse_genomes_project 19 2742148 2747032 - Dpf2 protein_coding retained_intron MGP_AJ_T0050633.1 MGP_AJ_G0024698.1 mouse_genomes_project 19 2743023 2746141 - Dpf2 protein_coding retained_intron MGP_AJ_T0050634.1 MGP_AJ_G0024698.1 mouse_genomes_project 19 2747846 2757261 - Dpf2 protein_coding retained_intron MGP_AJ_T0050635.1 MGP_AJ_G0024698.1 mouse_genomes_project 19 2748825 2757253 - Dpf2 protein_coding retained_intron MGP_AJ_T0050636.1 MGP_AJ_G0024698.1 mouse_genomes_project 19 2749236 2757494 - Dpf2 protein_coding processed_transcript MGP_AJ_T0050637.1 MGP_AJ_G0024698.1 mouse_genomes_project 19 2756309 2757291 - Dpf2 protein_coding processed_transcript MGP_AJ_T0051508.1 MGP_AJ_G0025003.1 mouse_genomes_project 19 26766321 26776945 + MGP_AJ_P0051508 Mlana protein_coding protein_coding MGP_AJ_T0050644.1 MGP_AJ_G0024703.1 mouse_genomes_project 19 2903271 2910420 + MGP_AJ_P0050644 Syvn1 protein_coding protein_coding MGP_AJ_T0050645.1 MGP_AJ_G0024703.1 mouse_genomes_project 19 2903333 2905899 + MGP_AJ_P0050645 Syvn1 protein_coding protein_coding MGP_AJ_T0050646.1 MGP_AJ_G0024703.1 mouse_genomes_project 19 2903357 2910417 + MGP_AJ_P0050646 Syvn1 protein_coding protein_coding MGP_AJ_T0050647.1 MGP_AJ_G0024703.1 mouse_genomes_project 19 2903760 2910419 + Syvn1 protein_coding retained_intron MGP_AJ_T0050648.1 MGP_AJ_G0024703.1 mouse_genomes_project 19 2903775 2910417 + MGP_AJ_P0050648 Syvn1 protein_coding protein_coding MGP_AJ_T0050649.1 MGP_AJ_G0024703.1 mouse_genomes_project 19 2903780 2906347 + Syvn1 protein_coding retained_intron MGP_AJ_T0050650.1 MGP_AJ_G0024703.1 mouse_genomes_project 19 2903799 2910417 + MGP_AJ_P0050650 Syvn1 protein_coding protein_coding MGP_AJ_T0052201.1 MGP_AJ_G0025242.1 mouse_genomes_project 19 54090473 54141492 + MGP_AJ_P0052201 Nhlrc2 protein_coding protein_coding MGP_AJ_T0013382.1 MGP_AJ_G0011477.1 mouse_genomes_project 19 12852380 12852936 + processed_pseudogene processed_pseudogene MGP_AJ_T0050837.1 MGP_AJ_G0024736.1 mouse_genomes_project 19 3671551 3683087 - MGP_AJ_P0050837 Esrra protein_coding protein_coding MGP_AJ_T0050838.1 MGP_AJ_G0024736.1 mouse_genomes_project 19 3673026 3683040 - MGP_AJ_P0050838 Esrra protein_coding protein_coding MGP_AJ_T0050839.1 MGP_AJ_G0024736.1 mouse_genomes_project 19 3673339 3683092 - Esrra protein_coding processed_transcript MGP_AJ_T0050840.1 MGP_AJ_G0024736.1 mouse_genomes_project 19 3681183 3683046 - Esrra protein_coding retained_intron MGP_AJ_T0050841.1 MGP_AJ_G0024736.1 mouse_genomes_project 19 3681357 3682330 - MGP_AJ_P0050841 Esrra protein_coding protein_coding MGP_AJ_T0051520.1 MGP_AJ_G0025008.1 mouse_genomes_project 19 27105029 27133492 + Uhrf2 protein_coding retained_intron MGP_AJ_T0051521.1 MGP_AJ_G0025008.1 mouse_genomes_project 19 27105029 27156322 + Uhrf2 protein_coding retained_intron MGP_AJ_T0051522.1 MGP_AJ_G0025008.1 mouse_genomes_project 19 27105029 27168512 + MGP_AJ_P0051522 Uhrf2 protein_coding protein_coding MGP_AJ_T0051523.1 MGP_AJ_G0025008.1 mouse_genomes_project 19 27105105 27131843 + MGP_AJ_P0051523 Uhrf2 protein_coding protein_coding MGP_AJ_T0051524.1 MGP_AJ_G0025008.1 mouse_genomes_project 19 27148547 27150269 + Uhrf2 protein_coding retained_intron MGP_AJ_T0051525.1 MGP_AJ_G0025008.1 mouse_genomes_project 19 27153306 27155048 + Uhrf2 protein_coding retained_intron MGP_AJ_T0051526.1 MGP_AJ_G0025008.1 mouse_genomes_project 19 27160483 27162106 + Uhrf2 protein_coding retained_intron MGP_AJ_T0051527.1 MGP_AJ_G0025008.1 mouse_genomes_project 19 27163845 27168512 + Uhrf2 protein_coding retained_intron MGP_AJ_T0051528.1 MGP_AJ_G0025008.1 mouse_genomes_project 19 27166750 27167729 + Uhrf2 protein_coding retained_intron MGP_AJ_T0051036.1 MGP_AJ_G0024795.1 mouse_genomes_project 19 5920268 5932195 + MGP_AJ_P0051036 Eef1g protein_coding protein_coding MGP_AJ_T0051037.1 MGP_AJ_G0024795.1 mouse_genomes_project 19 5920441 5931903 + MGP_AJ_P0051037 Eef1g protein_coding unknown_likely_coding MGP_AJ_T0051038.1 MGP_AJ_G0024795.1 mouse_genomes_project 19 5920797 5926234 + Eef1g protein_coding processed_transcript MGP_AJ_T0051039.1 MGP_AJ_G0024795.1 mouse_genomes_project 19 5921900 5926354 + Eef1g protein_coding processed_transcript MGP_AJ_T0051040.1 MGP_AJ_G0024795.1 mouse_genomes_project 19 5921900 5923882 + Eef1g protein_coding retained_intron MGP_AJ_T0051041.1 MGP_AJ_G0024795.1 mouse_genomes_project 19 5921900 5923187 + Eef1g protein_coding retained_intron MGP_AJ_T0051042.1 MGP_AJ_G0024795.1 mouse_genomes_project 19 5926121 5932195 + Eef1g protein_coding retained_intron MGP_AJ_T0051754.1 MGP_AJ_G0025095.1 mouse_genomes_project 19 38333041 38381157 + MGP_AJ_P0051754 Dntt protein_coding protein_coding MGP_AJ_T0051755.1 MGP_AJ_G0025095.1 mouse_genomes_project 19 38333041 38381157 + MGP_AJ_P0051755 Dntt protein_coding protein_coding MGP_AJ_T0051347.1 MGP_AJ_G0024949.1 mouse_genomes_project 19 17366087 17383165 - MGP_AJ_P0051347 Anxa1 protein_coding protein_coding MGP_AJ_T0051348.1 MGP_AJ_G0024949.1 mouse_genomes_project 19 17366215 17382893 - Anxa1 protein_coding processed_transcript MGP_AJ_T0051349.1 MGP_AJ_G0024949.1 mouse_genomes_project 19 17366215 17367967 - Anxa1 protein_coding retained_intron MGP_AJ_T0051350.1 MGP_AJ_G0024949.1 mouse_genomes_project 19 17370020 17370843 - Anxa1 protein_coding retained_intron MGP_AJ_T0051351.1 MGP_AJ_G0024949.1 mouse_genomes_project 19 17370020 17372283 - Anxa1 protein_coding retained_intron MGP_AJ_T0051352.1 MGP_AJ_G0024949.1 mouse_genomes_project 19 17370371 17374383 - Anxa1 protein_coding retained_intron MGP_AJ_T0051353.1 MGP_AJ_G0024949.1 mouse_genomes_project 19 17371920 17382872 - Anxa1 protein_coding processed_transcript MGP_AJ_T0098794.1 MGP_AJ_G0036778.1 mouse_genomes_project 19 34349019 34349097 - Gm22714 ribozyme ribozyme MGP_AJ_T0099718.1 MGP_AJ_G0037684.1 mouse_genomes_project 19 1723612 1723722 + Gm25334 snRNA snRNA MGP_AJ_T0051050.1 MGP_AJ_G0024801.1 mouse_genomes_project 19 6785787 6788208 + MGP_AJ_P0051050 Fth1 protein_coding protein_coding MGP_AJ_T0050609.1 MGP_AJ_G0024691.1 mouse_genomes_project 19 2568128 2569695 - MGP_AJ_P0050609 Fam89b protein_coding protein_coding MGP_AJ_T0050610.1 MGP_AJ_G0024691.1 mouse_genomes_project 19 2568128 2569675 - MGP_AJ_P0050610 Fam89b protein_coding protein_coding MGP_AJ_T0050611.1 MGP_AJ_G0024691.1 mouse_genomes_project 19 2568128 2569693 - MGP_AJ_P0050611 Fam89b protein_coding protein_coding MGP_AJ_T0050313.1 MGP_AJ_G0024598.1 mouse_genomes_project 19 670837 677588 - Tcirg1 protein_coding retained_intron MGP_AJ_T0050314.1 MGP_AJ_G0024598.1 mouse_genomes_project 19 670837 680755 - MGP_AJ_P0050314 Tcirg1 protein_coding protein_coding MGP_AJ_T0050315.1 MGP_AJ_G0024598.1 mouse_genomes_project 19 670837 682658 - MGP_AJ_P0050315 Tcirg1 protein_coding protein_coding MGP_AJ_T0050316.1 MGP_AJ_G0024598.1 mouse_genomes_project 19 670837 682516 - MGP_AJ_P0050316 Tcirg1 protein_coding protein_coding MGP_AJ_T0050317.1 MGP_AJ_G0024598.1 mouse_genomes_project 19 670837 682637 - MGP_AJ_P0050317 Tcirg1 protein_coding nonsense_mediated_decay MGP_AJ_T0050318.1 MGP_AJ_G0024598.1 mouse_genomes_project 19 671057 676539 - MGP_AJ_P0050318 Tcirg1 protein_coding nonsense_mediated_decay MGP_AJ_T0050319.1 MGP_AJ_G0024598.1 mouse_genomes_project 19 671187 672018 - Tcirg1 protein_coding retained_intron MGP_AJ_T0050320.1 MGP_AJ_G0024598.1 mouse_genomes_project 19 671858 672619 - Tcirg1 protein_coding retained_intron MGP_AJ_T0050321.1 MGP_AJ_G0024598.1 mouse_genomes_project 19 672994 673640 - Tcirg1 protein_coding retained_intron MGP_AJ_T0050322.1 MGP_AJ_G0024598.1 mouse_genomes_project 19 673522 677871 - MGP_AJ_P0050322 Tcirg1 protein_coding nonsense_mediated_decay MGP_AJ_T0050323.1 MGP_AJ_G0024598.1 mouse_genomes_project 19 676758 677762 - Tcirg1 protein_coding retained_intron MGP_AJ_T0050324.1 MGP_AJ_G0024598.1 mouse_genomes_project 19 677009 682565 - Tcirg1 protein_coding retained_intron MGP_AJ_T0050325.1 MGP_AJ_G0024598.1 mouse_genomes_project 19 677209 678937 - Tcirg1 protein_coding retained_intron MGP_AJ_T0051602.1 MGP_AJ_G0025043.1 mouse_genomes_project 19 32070369 32128892 + MGP_AJ_P0051602 Kif20b protein_coding protein_coding MGP_AJ_T0050923.1 MGP_AJ_G0024764.1 mouse_genomes_project 19 4481162 4518179 - MGP_AJ_P0050923 Slc22a19 protein_coding protein_coding MGP_AJ_T0050924.1 MGP_AJ_G0024764.1 mouse_genomes_project 19 4486143 4518148 - Slc22a19 protein_coding retained_intron MGP_AJ_T0050925.1 MGP_AJ_G0024764.1 mouse_genomes_project 19 4513560 4518179 - Slc22a19 protein_coding retained_intron MGP_AJ_T0051293.1 MGP_AJ_G0024922.1 mouse_genomes_project 19 10656458 10657406 + MGP_AJ_P0051293 Olfr1494 protein_coding protein_coding MGP_AJ_T0050394.1 MGP_AJ_G0024617.1 mouse_genomes_project 19 956257 958403 + MGP_AJ_P0050394 Ptprcap protein_coding protein_coding MGP_AJ_T0051540.1 MGP_AJ_G0025014.1 mouse_genomes_project 19 28959075 29038407 + MGP_AJ_P0051540 A1cf protein_coding unknown_likely_coding MGP_AJ_T0051541.1 MGP_AJ_G0025014.1 mouse_genomes_project 19 28959143 29035452 + MGP_AJ_P0051541 A1cf protein_coding protein_coding MGP_AJ_T0051696.1 MGP_AJ_G0025075.1 mouse_genomes_project 19 36378429 36436027 + MGP_AJ_P0051696 Cyp2c66 protein_coding protein_coding MGP_AJ_T0051697.1 MGP_AJ_G0025075.1 mouse_genomes_project 19 36378441 36436346 + MGP_AJ_P0051697 Cyp2c66 protein_coding nonsense_mediated_decay MGP_AJ_T0010278.1 MGP_AJ_G0008400.1 mouse_genomes_project 19 1066770 1066831 - Mir6985 miRNA miRNA MGP_AJ_T0050719.1 MGP_AJ_G0024721.1 mouse_genomes_project 19 3092951 3101059 - MGP_AJ_P0050719 Ppp2r5b protein_coding protein_coding MGP_AJ_T0050720.1 MGP_AJ_G0024721.1 mouse_genomes_project 19 3094471 3095666 - Ppp2r5b protein_coding retained_intron MGP_AJ_T0050721.1 MGP_AJ_G0024721.1 mouse_genomes_project 19 3099123 3101030 - Ppp2r5b protein_coding processed_transcript MGP_AJ_T0051873.1 MGP_AJ_G0025137.1 mouse_genomes_project 19 41329289 41361032 - MGP_AJ_P0051873 Cpn1 protein_coding protein_coding MGP_AJ_T0051874.1 MGP_AJ_G0025137.1 mouse_genomes_project 19 41334960 41342337 - Cpn1 protein_coding retained_intron MGP_AJ_T0050445.1 MGP_AJ_G0024629.1 mouse_genomes_project 19 1230014 1243730 - MGP_AJ_P0050445 Rhod protein_coding protein_coding MGP_AJ_T0050446.1 MGP_AJ_G0024629.1 mouse_genomes_project 19 1230222 1243719 - MGP_AJ_P0050446 Rhod protein_coding protein_coding MGP_AJ_T0050447.1 MGP_AJ_G0024629.1 mouse_genomes_project 19 1230782 1231111 - Rhod protein_coding processed_transcript MGP_AJ_T0052070.1 MGP_AJ_G0025206.1 mouse_genomes_project 19 44948734 44984893 - MGP_AJ_P0052070 Obfc1 protein_coding protein_coding MGP_AJ_T0052071.1 MGP_AJ_G0025206.1 mouse_genomes_project 19 44948739 44956433 - Obfc1 protein_coding processed_transcript MGP_AJ_T0052072.1 MGP_AJ_G0025206.1 mouse_genomes_project 19 44954864 44984810 - MGP_AJ_P0052072 Obfc1 protein_coding protein_coding MGP_AJ_T0052073.1 MGP_AJ_G0025206.1 mouse_genomes_project 19 44969800 44984738 - Obfc1 protein_coding processed_transcript MGP_AJ_T0052074.1 MGP_AJ_G0025206.1 mouse_genomes_project 19 44971749 44984670 - Obfc1 protein_coding processed_transcript MGP_AJ_T0052075.1 MGP_AJ_G0025206.1 mouse_genomes_project 19 44971878 44984868 - Obfc1 protein_coding retained_intron MGP_AJ_T0052076.1 MGP_AJ_G0025206.1 mouse_genomes_project 19 44972383 44985726 - MGP_AJ_P0052076 Obfc1 protein_coding protein_coding MGP_AJ_T0052077.1 MGP_AJ_G0025206.1 mouse_genomes_project 19 44980123 44984036 - Obfc1 protein_coding processed_transcript MGP_AJ_T0052078.1 MGP_AJ_G0025206.1 mouse_genomes_project 19 44983688 44984820 - Obfc1 protein_coding retained_intron MGP_AJ_T0052079.1 MGP_AJ_G0025206.1 mouse_genomes_project 19 44984063 44984798 - Obfc1 protein_coding processed_transcript MGP_AJ_T0011482.1 MGP_AJ_G0009604.1 mouse_genomes_project 19 35697244 35697327 - Gm24930 misc_RNA misc_RNA MGP_AJ_T0050947.1 MGP_AJ_G0024774.1 mouse_genomes_project 19 5693390 5707563 + MGP_AJ_P0050947 Stx5a protein_coding nonsense_mediated_decay MGP_AJ_T0050948.1 MGP_AJ_G0024774.1 mouse_genomes_project 19 5693390 5708045 + MGP_AJ_P0050948 Stx5a protein_coding protein_coding MGP_AJ_T0050949.1 MGP_AJ_G0024774.1 mouse_genomes_project 19 5693447 5694648 + Stx5a protein_coding retained_intron MGP_AJ_T0050950.1 MGP_AJ_G0024774.1 mouse_genomes_project 19 5693456 5707100 + MGP_AJ_P0050950 Stx5a protein_coding protein_coding MGP_AJ_T0050951.1 MGP_AJ_G0024774.1 mouse_genomes_project 19 5693465 5707579 + MGP_AJ_P0050951 Stx5a protein_coding nonsense_mediated_decay MGP_AJ_T0050952.1 MGP_AJ_G0024774.1 mouse_genomes_project 19 5693466 5707619 + MGP_AJ_P0050952 Stx5a protein_coding protein_coding MGP_AJ_T0050953.1 MGP_AJ_G0024774.1 mouse_genomes_project 19 5693489 5696504 + Stx5a protein_coding retained_intron MGP_AJ_T0050954.1 MGP_AJ_G0024774.1 mouse_genomes_project 19 5693646 5694838 + MGP_AJ_P0050954 Stx5a protein_coding protein_coding MGP_AJ_T0050955.1 MGP_AJ_G0024774.1 mouse_genomes_project 19 5693780 5707619 + MGP_AJ_P0050955 Stx5a protein_coding protein_coding MGP_AJ_T0050956.1 MGP_AJ_G0024774.1 mouse_genomes_project 19 5693784 5701750 + MGP_AJ_P0050956 Stx5a protein_coding protein_coding MGP_AJ_T0050957.1 MGP_AJ_G0024774.1 mouse_genomes_project 19 5693865 5707619 + MGP_AJ_P0050957 Stx5a protein_coding nonsense_mediated_decay MGP_AJ_T0050958.1 MGP_AJ_G0024774.1 mouse_genomes_project 19 5694121 5700866 + Stx5a protein_coding retained_intron MGP_AJ_T0050959.1 MGP_AJ_G0024774.1 mouse_genomes_project 19 5694837 5701097 + Stx5a protein_coding retained_intron MGP_AJ_T0050960.1 MGP_AJ_G0024774.1 mouse_genomes_project 19 5700381 5708049 + MGP_AJ_P0050960 Stx5a protein_coding protein_coding MGP_AJ_T0050961.1 MGP_AJ_G0024774.1 mouse_genomes_project 19 5700480 5707035 + Stx5a protein_coding retained_intron MGP_AJ_T0050962.1 MGP_AJ_G0024774.1 mouse_genomes_project 19 5700495 5701691 + Stx5a protein_coding retained_intron MGP_AJ_T0050963.1 MGP_AJ_G0024774.1 mouse_genomes_project 19 5700510 5706961 + Stx5a protein_coding retained_intron MGP_AJ_T0050964.1 MGP_AJ_G0024774.1 mouse_genomes_project 19 5700567 5701356 + Stx5a protein_coding retained_intron MGP_AJ_T0052112.1 MGP_AJ_G0025218.1 mouse_genomes_project 19 50428070 50515568 - MGP_AJ_P0052112 Xpnpep1 protein_coding protein_coding MGP_AJ_T0052113.1 MGP_AJ_G0025218.1 mouse_genomes_project 19 50431975 50515656 - MGP_AJ_P0052113 Xpnpep1 protein_coding nonsense_mediated_decay MGP_AJ_T0052114.1 MGP_AJ_G0025218.1 mouse_genomes_project 19 50468117 50497302 - Xpnpep1 protein_coding processed_transcript MGP_AJ_T0052115.1 MGP_AJ_G0025218.1 mouse_genomes_project 19 50468118 50519356 - MGP_AJ_P0052115 Xpnpep1 protein_coding protein_coding MGP_AJ_T0052116.1 MGP_AJ_G0025218.1 mouse_genomes_project 19 50472339 50473609 - Xpnpep1 protein_coding retained_intron MGP_AJ_T0052117.1 MGP_AJ_G0025218.1 mouse_genomes_project 19 50484903 50492341 - Xpnpep1 protein_coding processed_transcript MGP_AJ_T0052118.1 MGP_AJ_G0025218.1 mouse_genomes_project 19 50487067 50497137 - Xpnpep1 protein_coding processed_transcript MGP_AJ_T0052119.1 MGP_AJ_G0025218.1 mouse_genomes_project 19 50489182 50490605 - Xpnpep1 protein_coding retained_intron MGP_AJ_T0052120.1 MGP_AJ_G0025218.1 mouse_genomes_project 19 50489211 50515575 - MGP_AJ_P0052120 Xpnpep1 protein_coding protein_coding MGP_AJ_T0052121.1 MGP_AJ_G0025218.1 mouse_genomes_project 19 50494431 50509150 - Xpnpep1 protein_coding processed_transcript MGP_AJ_T0052122.1 MGP_AJ_G0025218.1 mouse_genomes_project 19 50509511 50515579 - Xpnpep1 protein_coding processed_transcript MGP_AJ_T0051443.1 MGP_AJ_G0024986.1 mouse_genomes_project 19 24428333 24463632 - MGP_AJ_P0051443 Pum3 protein_coding protein_coding MGP_AJ_T0010291.1 MGP_AJ_G0008413.1 mouse_genomes_project 19 5840605 5840681 - Mir5136 miRNA miRNA MGP_AJ_T0051939.1 MGP_AJ_G0025162.1 mouse_genomes_project 19 42544488 42550794 + MGP_AJ_P0051939 Tlx1 protein_coding protein_coding MGP_AJ_T0051940.1 MGP_AJ_G0025162.1 mouse_genomes_project 19 42545277 42550250 + MGP_AJ_P0051940 Tlx1 protein_coding protein_coding MGP_AJ_T0051009.1 MGP_AJ_G0024784.1 mouse_genomes_project 19 5823331 5827399 + MGP_AJ_P0051009 Ubxn1 protein_coding protein_coding MGP_AJ_T0051010.1 MGP_AJ_G0024784.1 mouse_genomes_project 19 5823415 5827407 + MGP_AJ_P0051010 Ubxn1 protein_coding protein_coding MGP_AJ_T0052222.1 MGP_AJ_G0025248.1 mouse_genomes_project 19 54585000 54772250 - MGP_AJ_P0052222 Ablim1 protein_coding protein_coding MGP_AJ_T0052223.1 MGP_AJ_G0025248.1 mouse_genomes_project 19 54585157 54673885 - MGP_AJ_P0052223 Ablim1 protein_coding protein_coding MGP_AJ_T0052224.1 MGP_AJ_G0025248.1 mouse_genomes_project 19 54585534 54673885 - MGP_AJ_P0052224 Ablim1 protein_coding protein_coding MGP_AJ_T0052225.1 MGP_AJ_G0025248.1 mouse_genomes_project 19 54585541 54753851 - MGP_AJ_P0052225 Ablim1 protein_coding protein_coding MGP_AJ_T0052226.1 MGP_AJ_G0025248.1 mouse_genomes_project 19 54588550 54795517 - MGP_AJ_P0052226 Ablim1 protein_coding protein_coding MGP_AJ_T0052227.1 MGP_AJ_G0025248.1 mouse_genomes_project 19 54588685 54673883 - MGP_AJ_P0052227 Ablim1 protein_coding protein_coding MGP_AJ_T0052228.1 MGP_AJ_G0025248.1 mouse_genomes_project 19 54588746 54673789 - MGP_AJ_P0052228 Ablim1 protein_coding protein_coding MGP_AJ_T0052229.1 MGP_AJ_G0025248.1 mouse_genomes_project 19 54588951 54753676 - MGP_AJ_P0052229 Ablim1 protein_coding protein_coding MGP_AJ_T0052230.1 MGP_AJ_G0025248.1 mouse_genomes_project 19 54589233 54796049 - MGP_AJ_P0052230 Ablim1 protein_coding protein_coding MGP_AJ_T0052231.1 MGP_AJ_G0025248.1 mouse_genomes_project 19 54589271 54772183 - MGP_AJ_P0052231 Ablim1 protein_coding protein_coding MGP_AJ_T0052232.1 MGP_AJ_G0025248.1 mouse_genomes_project 19 54589407 54753611 - MGP_AJ_P0052232 Ablim1 protein_coding protein_coding MGP_AJ_T0052233.1 MGP_AJ_G0025248.1 mouse_genomes_project 19 54589449 54753716 - MGP_AJ_P0052233 Ablim1 protein_coding protein_coding MGP_AJ_T0052234.1 MGP_AJ_G0025248.1 mouse_genomes_project 19 54589518 54872933 - Ablim1 protein_coding retained_intron MGP_AJ_T0052235.1 MGP_AJ_G0025248.1 mouse_genomes_project 19 54591700 54599491 - Ablim1 protein_coding processed_transcript MGP_AJ_T0052236.1 MGP_AJ_G0025248.1 mouse_genomes_project 19 54593307 54597195 - Ablim1 protein_coding retained_intron MGP_AJ_T0052237.1 MGP_AJ_G0025248.1 mouse_genomes_project 19 54613211 54690618 - Ablim1 protein_coding retained_intron MGP_AJ_T0052238.1 MGP_AJ_G0025248.1 mouse_genomes_project 19 54629439 54690587 - Ablim1 protein_coding processed_transcript MGP_AJ_T0052239.1 MGP_AJ_G0025248.1 mouse_genomes_project 19 54670897 54673900 - Ablim1 protein_coding processed_transcript MGP_AJ_T0052240.1 MGP_AJ_G0025248.1 mouse_genomes_project 19 54686173 54690618 - Ablim1 protein_coding processed_transcript MGP_AJ_T0052241.1 MGP_AJ_G0025248.1 mouse_genomes_project 19 54686515 54872925 - MGP_AJ_P0052241 Ablim1 protein_coding protein_coding MGP_AJ_T0052242.1 MGP_AJ_G0025248.1 mouse_genomes_project 19 54686755 54738594 - MGP_AJ_P0052242 Ablim1 protein_coding protein_coding MGP_AJ_T0051131.1 MGP_AJ_G0024830.1 mouse_genomes_project 19 7731203 7733215 - MGP_AJ_P0051131 Zp1 protein_coding protein_coding MGP_AJ_T0051132.1 MGP_AJ_G0024830.1 mouse_genomes_project 19 7731205 7737549 - MGP_AJ_P0051132 Zp1 protein_coding protein_coding MGP_AJ_T0051509.1 MGP_AJ_G0025004.1 mouse_genomes_project 19 26782898 26875580 - MGP_AJ_P0051509 9930021J03Rik protein_coding protein_coding MGP_AJ_T0051510.1 MGP_AJ_G0025004.1 mouse_genomes_project 19 26783809 26822358 - MGP_AJ_P0051510 9930021J03Rik protein_coding protein_coding MGP_AJ_T0051511.1 MGP_AJ_G0025004.1 mouse_genomes_project 19 26784071 26875722 - MGP_AJ_P0051511 9930021J03Rik protein_coding protein_coding MGP_AJ_T0051512.1 MGP_AJ_G0025004.1 mouse_genomes_project 19 26789218 26822420 - MGP_AJ_P0051512 9930021J03Rik protein_coding nonsense_mediated_decay MGP_AJ_T0051834.1 MGP_AJ_G0025125.1 mouse_genomes_project 19 40054326 40081940 - MGP_AJ_P0051834 Pyroxd2 protein_coding protein_coding MGP_AJ_T0052061.1 MGP_AJ_G0025200.1 mouse_genomes_project 19 44540579 44574302 - MGP_AJ_P0052061 Calhm2 protein_coding protein_coding MGP_AJ_T0052062.1 MGP_AJ_G0025200.1 mouse_genomes_project 19 44566936 44574302 - MGP_AJ_P0052062 Calhm2 protein_coding protein_coding MGP_AJ_T0050745.1 MGP_AJ_G0024726.1 mouse_genomes_project 19 3206442 3220809 + Map4k2 protein_coding retained_intron MGP_AJ_T0050746.1 MGP_AJ_G0024726.1 mouse_genomes_project 19 3206462 3207961 + MGP_AJ_P0050746 Map4k2 protein_coding nonsense_mediated_decay MGP_AJ_T0050747.1 MGP_AJ_G0024726.1 mouse_genomes_project 19 3206467 3220812 + MGP_AJ_P0050747 Map4k2 protein_coding protein_coding MGP_AJ_T0050748.1 MGP_AJ_G0024726.1 mouse_genomes_project 19 3206498 3207301 + Map4k2 protein_coding processed_transcript MGP_AJ_T0050749.1 MGP_AJ_G0024726.1 mouse_genomes_project 19 3206515 3220498 + MGP_AJ_P0050749 Map4k2 protein_coding nonsense_mediated_decay MGP_AJ_T0050750.1 MGP_AJ_G0024726.1 mouse_genomes_project 19 3206523 3208179 + Map4k2 protein_coding retained_intron MGP_AJ_T0050751.1 MGP_AJ_G0024726.1 mouse_genomes_project 19 3206531 3211047 + MGP_AJ_P0050751 Map4k2 protein_coding protein_coding MGP_AJ_T0050752.1 MGP_AJ_G0024726.1 mouse_genomes_project 19 3206557 3218724 + MGP_AJ_P0050752 Map4k2 protein_coding nonsense_mediated_decay MGP_AJ_T0050753.1 MGP_AJ_G0024726.1 mouse_genomes_project 19 3206577 3208828 + Map4k2 protein_coding retained_intron MGP_AJ_T0050754.1 MGP_AJ_G0024726.1 mouse_genomes_project 19 3206725 3209163 + Map4k2 protein_coding processed_transcript MGP_AJ_T0050755.1 MGP_AJ_G0024726.1 mouse_genomes_project 19 3206756 3208826 + Map4k2 protein_coding processed_transcript MGP_AJ_T0050756.1 MGP_AJ_G0024726.1 mouse_genomes_project 19 3206778 3208826 + Map4k2 protein_coding retained_intron MGP_AJ_T0050757.1 MGP_AJ_G0024726.1 mouse_genomes_project 19 3207083 3217192 + Map4k2 protein_coding retained_intron MGP_AJ_T0050758.1 MGP_AJ_G0024726.1 mouse_genomes_project 19 3207841 3208150 + Map4k2 protein_coding retained_intron MGP_AJ_T0050759.1 MGP_AJ_G0024726.1 mouse_genomes_project 19 3208820 3209952 + Map4k2 protein_coding retained_intron MGP_AJ_T0050760.1 MGP_AJ_G0024726.1 mouse_genomes_project 19 3210654 3211598 + Map4k2 protein_coding retained_intron MGP_AJ_T0050761.1 MGP_AJ_G0024726.1 mouse_genomes_project 19 3211853 3219037 + Map4k2 protein_coding retained_intron MGP_AJ_T0050762.1 MGP_AJ_G0024726.1 mouse_genomes_project 19 3211973 3216964 + Map4k2 protein_coding processed_transcript MGP_AJ_T0050763.1 MGP_AJ_G0024726.1 mouse_genomes_project 19 3211996 3219035 + MGP_AJ_P0050763 Map4k2 protein_coding nonsense_mediated_decay MGP_AJ_T0050764.1 MGP_AJ_G0024726.1 mouse_genomes_project 19 3216213 3216885 + Map4k2 protein_coding retained_intron MGP_AJ_T0050765.1 MGP_AJ_G0024726.1 mouse_genomes_project 19 3217816 3220639 + Map4k2 protein_coding processed_transcript MGP_AJ_T0050766.1 MGP_AJ_G0024726.1 mouse_genomes_project 19 3217971 3218830 + Map4k2 protein_coding processed_transcript MGP_AJ_T0050270.1 MGP_AJ_G0024590.1 mouse_genomes_project 19 89621 153648 + MGP_AJ_P0050270 Cpt1a protein_coding protein_coding MGP_AJ_T0010305.1 MGP_AJ_G0008427.1 mouse_genomes_project 19 31962982 31963069 - Mir107 miRNA miRNA MGP_AJ_T0050997.1 MGP_AJ_G0024781.1 mouse_genomes_project 19 5789463 5791779 - MGP_AJ_P0050997 Gng3 protein_coding protein_coding MGP_AJ_T0050433.1 MGP_AJ_G0024628.1 mouse_genomes_project 19 1119569 1202978 - MGP_AJ_P0050433 Kdm2a protein_coding protein_coding MGP_AJ_T0050434.1 MGP_AJ_G0024628.1 mouse_genomes_project 19 1121319 1201771 - MGP_AJ_P0050434 Kdm2a protein_coding protein_coding MGP_AJ_T0050435.1 MGP_AJ_G0024628.1 mouse_genomes_project 19 1124418 1127555 - MGP_AJ_P0050435 Kdm2a protein_coding nonsense_mediated_decay MGP_AJ_T0050436.1 MGP_AJ_G0024628.1 mouse_genomes_project 19 1125341 1127810 - Kdm2a protein_coding retained_intron MGP_AJ_T0050437.1 MGP_AJ_G0024628.1 mouse_genomes_project 19 1129912 1139182 - MGP_AJ_P0050437 Kdm2a protein_coding protein_coding MGP_AJ_T0050438.1 MGP_AJ_G0024628.1 mouse_genomes_project 19 1134196 1139100 - MGP_AJ_P0050438 Kdm2a protein_coding nonsense_mediated_decay MGP_AJ_T0050439.1 MGP_AJ_G0024628.1 mouse_genomes_project 19 1146653 1201774 - MGP_AJ_P0050439 Kdm2a protein_coding protein_coding MGP_AJ_T0050440.1 MGP_AJ_G0024628.1 mouse_genomes_project 19 1153247 1201770 - Kdm2a protein_coding retained_intron MGP_AJ_T0050441.1 MGP_AJ_G0024628.1 mouse_genomes_project 19 1155237 1167686 - MGP_AJ_P0050441 Kdm2a protein_coding protein_coding MGP_AJ_T0050442.1 MGP_AJ_G0024628.1 mouse_genomes_project 19 1155651 1201762 - Kdm2a protein_coding retained_intron MGP_AJ_T0050443.1 MGP_AJ_G0024628.1 mouse_genomes_project 19 1193631 1201771 - MGP_AJ_P0050443 Kdm2a protein_coding protein_coding MGP_AJ_T0050444.1 MGP_AJ_G0024628.1 mouse_genomes_project 19 1197144 1201789 - Kdm2a protein_coding retained_intron MGP_AJ_T0003849.1 MGP_AJ_G0003446.1 mouse_genomes_project 19 2687265 2693960 + Frmd8os antisense antisense MGP_AJ_T0003850.1 MGP_AJ_G0003446.1 mouse_genomes_project 19 2691079 2693944 + Frmd8os antisense antisense MGP_AJ_T0050931.1 MGP_AJ_G0024768.1 mouse_genomes_project 19 5543475 5563943 + MGP_AJ_P0050931 Slc22a8 protein_coding protein_coding MGP_AJ_T0050932.1 MGP_AJ_G0024768.1 mouse_genomes_project 19 5543475 5563943 + MGP_AJ_P0050932 Slc22a8 protein_coding protein_coding MGP_AJ_T0051303.1 MGP_AJ_G0024932.1 mouse_genomes_project 19 11343296 11496254 - MGP_AJ_P0051303 Tle4 protein_coding protein_coding MGP_AJ_T0051304.1 MGP_AJ_G0024932.1 mouse_genomes_project 19 11343374 11496322 - MGP_AJ_P0051304 Tle4 protein_coding protein_coding MGP_AJ_T0017694.1 MGP_AJ_G0015356.1 mouse_genomes_project 19 7556901 7603743 + A430093F15Rik processed_transcript lincRNA MGP_AJ_T0017695.1 MGP_AJ_G0015356.1 mouse_genomes_project 19 7556905 7603734 + A430093F15Rik processed_transcript lincRNA MGP_AJ_T0017696.1 MGP_AJ_G0015356.1 mouse_genomes_project 19 7556914 7603377 + A430093F15Rik processed_transcript lincRNA MGP_AJ_T0017697.1 MGP_AJ_G0015356.1 mouse_genomes_project 19 7565959 7574254 + A430093F15Rik processed_transcript retained_intron MGP_AJ_T0017698.1 MGP_AJ_G0015356.1 mouse_genomes_project 19 7599617 7603739 + A430093F15Rik processed_transcript lincRNA MGP_AJ_T0017699.1 MGP_AJ_G0015356.1 mouse_genomes_project 19 7603051 7603736 + A430093F15Rik processed_transcript retained_intron MGP_AJ_T0051587.1 MGP_AJ_G0025034.1 mouse_genomes_project 19 31421339 31459421 + MGP_AJ_P0051587 Fas protein_coding protein_coding MGP_AJ_T0051588.1 MGP_AJ_G0025034.1 mouse_genomes_project 19 31421339 31439945 + MGP_AJ_P0051588 Fas protein_coding protein_coding MGP_AJ_T0050528.1 MGP_AJ_G0024661.1 mouse_genomes_project 19 1960692 2101357 - MGP_AJ_P0050528 Pacs1 protein_coding protein_coding MGP_AJ_T0101981.1 MGP_AJ_G0039808.1 mouse_genomes_project 19 56287309 56289716 + transcribed_unprocessed_pseudogene processed_transcript MGP_AJ_T0101982.1 MGP_AJ_G0039808.1 mouse_genomes_project 19 56287309 56287723 + transcribed_unprocessed_pseudogene processed_transcript MGP_AJ_T0101983.1 MGP_AJ_G0039808.1 mouse_genomes_project 19 56287474 56304133 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_AJ_T0007105.1 MGP_AJ_G0005829.1 mouse_genomes_project 19 42711271 42711809 + Gm29594 lincRNA lincRNA MGP_AJ_T0050859.1 MGP_AJ_G0024744.1 mouse_genomes_project 19 3745783 3751279 - MGP_AJ_P0050859 Vegfb protein_coding protein_coding MGP_AJ_T0050860.1 MGP_AJ_G0024744.1 mouse_genomes_project 19 3745783 3751257 - MGP_AJ_P0050860 Vegfb protein_coding protein_coding MGP_AJ_T0050861.1 MGP_AJ_G0024744.1 mouse_genomes_project 19 3750021 3750768 - Vegfb protein_coding retained_intron MGP_AJ_T0051282.1 MGP_AJ_G0024911.1 mouse_genomes_project 19 10274014 10274944 + MGP_AJ_P0051282 Olfr1469 protein_coding protein_coding MGP_AJ_T0099727.1 MGP_AJ_G0037693.1 mouse_genomes_project 19 22458734 22458838 - Gm26207 snRNA snRNA MGP_AJ_T0013389.1 MGP_AJ_G0011484.1 mouse_genomes_project 19 25783122 25783515 - processed_pseudogene processed_pseudogene MGP_AJ_T0003843.1 MGP_AJ_G0003443.1 mouse_genomes_project 19 1619378 1623651 + Gm21844 antisense antisense MGP_AJ_T0010300.1 MGP_AJ_G0008422.1 mouse_genomes_project 19 26183486 26183583 + Mir101b miRNA miRNA MGP_AJ_T0050722.1 MGP_AJ_G0024722.1 mouse_genomes_project 19 3106853 3127127 + MGP_AJ_P0050722 Atg2a protein_coding protein_coding MGP_AJ_T0050723.1 MGP_AJ_G0024722.1 mouse_genomes_project 19 3110650 3127087 + MGP_AJ_P0050723 Atg2a protein_coding protein_coding MGP_AJ_T0050724.1 MGP_AJ_G0024722.1 mouse_genomes_project 19 3116283 3117091 + Atg2a protein_coding retained_intron MGP_AJ_T0050725.1 MGP_AJ_G0024722.1 mouse_genomes_project 19 3121166 3124415 + Atg2a protein_coding retained_intron MGP_AJ_T0050726.1 MGP_AJ_G0024722.1 mouse_genomes_project 19 3123136 3124924 + Atg2a protein_coding retained_intron MGP_AJ_T0052279.1 MGP_AJ_G0025267.1 mouse_genomes_project 19 57793572 57820631 - MGP_AJ_P0052279 Fam204a protein_coding unknown_likely_coding MGP_AJ_T0050579.1 MGP_AJ_G0024680.1 mouse_genomes_project 19 2337534 2338555 - MGP_AJ_P0050579 1700020D05Rik protein_coding protein_coding MGP_AJ_T0100992.1 MGP_AJ_G0038958.1 mouse_genomes_project 19 17012277 17012409 - Gm22684 snoRNA snoRNA MGP_AJ_T0050607.1 MGP_AJ_G0024690.1 mouse_genomes_project 19 2546508 2566360 - MGP_AJ_P0050607 Ehbp1l1 protein_coding protein_coding MGP_AJ_T0050608.1 MGP_AJ_G0024690.1 mouse_genomes_project 19 2546508 2566360 - MGP_AJ_P0050608 Ehbp1l1 protein_coding protein_coding MGP_AJ_T0051934.1 MGP_AJ_G0025160.1 mouse_genomes_project 19 42446054 42454855 + MGP_AJ_P0051934 Sfxn3 protein_coding protein_coding MGP_AJ_T0051935.1 MGP_AJ_G0025160.1 mouse_genomes_project 19 42446054 42454855 + MGP_AJ_P0051935 Sfxn3 protein_coding protein_coding MGP_AJ_T0051936.1 MGP_AJ_G0025160.1 mouse_genomes_project 19 42446054 42454855 + MGP_AJ_P0051936 Sfxn3 protein_coding protein_coding MGP_AJ_T0017671.1 MGP_AJ_G0015352.1 mouse_genomes_project 19 3276054 3285257 - Gm14965 processed_transcript antisense MGP_AJ_T0017672.1 MGP_AJ_G0015352.1 mouse_genomes_project 19 3283460 3285257 - Gm14965 processed_transcript retained_intron MGP_AJ_T0051193.1 MGP_AJ_G0024851.1 mouse_genomes_project 19 8414461 8440700 + MGP_AJ_P0051193 Ms4a4d protein_coding protein_coding MGP_AJ_T0007058.1 MGP_AJ_G0005797.1 mouse_genomes_project 19 1959095 1960176 + Gm28901 lincRNA lincRNA MGP_AJ_T0051483.1 MGP_AJ_G0024998.1 mouse_genomes_project 19 26400710 26410434 - MGP_AJ_P0051483 Plgrkt protein_coding protein_coding MGP_AJ_T0051484.1 MGP_AJ_G0024998.1 mouse_genomes_project 19 26402510 26403979 - Plgrkt protein_coding retained_intron MGP_AJ_T0051485.1 MGP_AJ_G0024998.1 mouse_genomes_project 19 26403147 26414205 - MGP_AJ_P0051485 Plgrkt protein_coding protein_coding MGP_AJ_T0051486.1 MGP_AJ_G0024998.1 mouse_genomes_project 19 26403241 26414622 - MGP_AJ_P0051486 Plgrkt protein_coding protein_coding MGP_AJ_T0051487.1 MGP_AJ_G0024998.1 mouse_genomes_project 19 26410412 26420106 - MGP_AJ_P0051487 Plgrkt protein_coding protein_coding MGP_AJ_T0051488.1 MGP_AJ_G0024998.1 mouse_genomes_project 19 26413651 26416697 - Plgrkt protein_coding processed_transcript MGP_AJ_T0051489.1 MGP_AJ_G0024998.1 mouse_genomes_project 19 26414886 26417260 - Plgrkt protein_coding processed_transcript MGP_AJ_T0051490.1 MGP_AJ_G0024998.1 mouse_genomes_project 19 26416872 26420188 - Plgrkt protein_coding processed_transcript MGP_AJ_T0050463.1 MGP_AJ_G0024637.1 mouse_genomes_project 19 1560564 1629453 - MGP_AJ_P0050463 Gm21992 protein_coding nonsense_mediated_decay MGP_AJ_T0050471.1 MGP_AJ_G0024637.1 mouse_genomes_project 19 1602567 1629349 - MGP_AJ_P0050471 Gm21992 protein_coding protein_coding MGP_AJ_T0050472.1 MGP_AJ_G0024637.1 mouse_genomes_project 19 1602568 1629053 - MGP_AJ_P0050472 Gm21992 protein_coding protein_coding MGP_AJ_T0050475.1 MGP_AJ_G0024637.1 mouse_genomes_project 19 1604784 1629349 - MGP_AJ_P0050475 Gm21992 protein_coding protein_coding MGP_AJ_T0050478.1 MGP_AJ_G0024637.1 mouse_genomes_project 19 1608578 1629444 - Gm21992 protein_coding retained_intron MGP_AJ_T0050479.1 MGP_AJ_G0024637.1 mouse_genomes_project 19 1610500 1619869 - Gm21992 protein_coding processed_transcript MGP_AJ_T0003848.1 MGP_AJ_G0003445.1 mouse_genomes_project 19 2567247 2571668 + Gm16538 antisense antisense MGP_AJ_T0050654.1 MGP_AJ_G0024706.1 mouse_genomes_project 19 2914689 2916470 + MGP_AJ_P0050654 protein_coding protein_coding MGP_AJ_T0051702.1 MGP_AJ_G0025078.1 mouse_genomes_project 19 36710665 36761346 + MGP_AJ_P0051702 Cyp2c39 protein_coding protein_coding MGP_AJ_T0051672.1 MGP_AJ_G0025066.1 mouse_genomes_project 19 35406767 35443806 - MGP_AJ_P0051672 Fra10ac1 protein_coding protein_coding MGP_AJ_T0050545.1 MGP_AJ_G0024671.1 mouse_genomes_project 19 2261054 2263214 + AI837181 protein_coding processed_transcript MGP_AJ_T0050546.1 MGP_AJ_G0024671.1 mouse_genomes_project 19 2261054 2263214 + MGP_AJ_P0050546 AI837181 protein_coding protein_coding MGP_AJ_T0051061.1 MGP_AJ_G0024804.1 mouse_genomes_project 19 6847508 6865584 + MGP_AJ_P0051061 Fads3 protein_coding protein_coding MGP_AJ_T0050510.1 MGP_AJ_G0024655.1 mouse_genomes_project 19 1892511 1895071 + MGP_AJ_P0050510 Cd248 protein_coding protein_coding MGP_AJ_T0051289.1 MGP_AJ_G0024918.1 mouse_genomes_project 19 10488818 10489665 + MGP_AJ_P0051289 protein_coding protein_coding MGP_AJ_T0051159.1 MGP_AJ_G0024842.1 mouse_genomes_project 19 8094231 8100962 - Ms4a5 protein_coding retained_intron MGP_AJ_T0051160.1 MGP_AJ_G0024842.1 mouse_genomes_project 19 8094859 8105344 - MGP_AJ_P0051160 Ms4a5 protein_coding protein_coding MGP_AJ_T0051161.1 MGP_AJ_G0024842.1 mouse_genomes_project 19 8094859 8105404 - MGP_AJ_P0051161 Ms4a5 protein_coding protein_coding MGP_AJ_T0051162.1 MGP_AJ_G0024842.1 mouse_genomes_project 19 8095162 8101177 - Ms4a5 protein_coding processed_transcript MGP_AJ_T0051163.1 MGP_AJ_G0024842.1 mouse_genomes_project 19 8098256 8105391 - MGP_AJ_P0051163 Ms4a5 protein_coding nonsense_mediated_decay MGP_AJ_T0050385.1 MGP_AJ_G0024616.1 mouse_genomes_project 19 950127 955687 + MGP_AJ_P0050385 Coro1b protein_coding protein_coding MGP_AJ_T0050386.1 MGP_AJ_G0024616.1 mouse_genomes_project 19 950127 952014 + MGP_AJ_P0050386 Coro1b protein_coding protein_coding MGP_AJ_T0050387.1 MGP_AJ_G0024616.1 mouse_genomes_project 19 950136 951064 + Coro1b protein_coding retained_intron MGP_AJ_T0050388.1 MGP_AJ_G0024616.1 mouse_genomes_project 19 950140 951144 + Coro1b protein_coding retained_intron MGP_AJ_T0050389.1 MGP_AJ_G0024616.1 mouse_genomes_project 19 950169 953009 + Coro1b protein_coding processed_transcript MGP_AJ_T0050390.1 MGP_AJ_G0024616.1 mouse_genomes_project 19 950172 951763 + Coro1b protein_coding retained_intron MGP_AJ_T0050391.1 MGP_AJ_G0024616.1 mouse_genomes_project 19 952052 954460 + Coro1b protein_coding retained_intron MGP_AJ_T0050392.1 MGP_AJ_G0024616.1 mouse_genomes_project 19 952879 955096 + Coro1b protein_coding retained_intron MGP_AJ_T0050393.1 MGP_AJ_G0024616.1 mouse_genomes_project 19 953089 955313 + Coro1b protein_coding retained_intron MGP_AJ_T0051045.1 MGP_AJ_G0024797.1 mouse_genomes_project 19 6037430 6041755 - MGP_AJ_P0051045 Scgb1a1 protein_coding protein_coding MGP_AJ_T0100990.1 MGP_AJ_G0038956.1 mouse_genomes_project 19 10552774 10552906 - Gm24124 snoRNA snoRNA MGP_AJ_T0051709.1 MGP_AJ_G0025085.1 mouse_genomes_project 19 37360305 37381901 + MGP_AJ_P0051709 Cyp2c50 protein_coding protein_coding MGP_AJ_T0101008.1 MGP_AJ_G0038974.1 mouse_genomes_project 19 58616221 58616350 - Gm22520 snoRNA snoRNA MGP_AJ_T0013373.1 MGP_AJ_G0011468.1 mouse_genomes_project 19 4476390 4476897 + processed_pseudogene processed_pseudogene MGP_AJ_T0051063.1 MGP_AJ_G0024806.1 mouse_genomes_project 19 6989771 7003752 + MGP_AJ_P0051063 Fads1 protein_coding protein_coding MGP_AJ_T0050536.1 MGP_AJ_G0024668.1 mouse_genomes_project 19 2210765 2221716 - MGP_AJ_P0050536 Sart1 protein_coding protein_coding MGP_AJ_T0051894.1 MGP_AJ_G0025142.1 mouse_genomes_project 19 41513232 41520325 - MGP_AJ_P0051894 Bloc1s2 protein_coding protein_coding MGP_AJ_T0011485.1 MGP_AJ_G0009607.1 mouse_genomes_project 19 56376261 56376345 - Gm22561 misc_RNA misc_RNA MGP_AJ_T0051847.1 MGP_AJ_G0025129.1 mouse_genomes_project 19 40853428 40878458 - MGP_AJ_P0051847 Got1 protein_coding protein_coding MGP_AJ_T0051848.1 MGP_AJ_G0025129.1 mouse_genomes_project 19 40853697 40869762 - MGP_AJ_P0051848 Got1 protein_coding nonsense_mediated_decay MGP_AJ_T0051849.1 MGP_AJ_G0025129.1 mouse_genomes_project 19 40853993 40858473 - Got1 protein_coding retained_intron MGP_AJ_T0051850.1 MGP_AJ_G0025129.1 mouse_genomes_project 19 40865881 40878338 - Got1 protein_coding processed_transcript MGP_AJ_T0051463.1 MGP_AJ_G0024990.1 mouse_genomes_project 19 25936757 25956270 - MGP_AJ_P0051463 4430402I18Rik protein_coding protein_coding MGP_AJ_T0051465.1 MGP_AJ_G0024990.1 mouse_genomes_project 19 25944912 26012451 - MGP_AJ_P0051465 4430402I18Rik protein_coding nonsense_mediated_decay MGP_AJ_T0051466.1 MGP_AJ_G0024990.1 mouse_genomes_project 19 25967443 26008873 - MGP_AJ_P0051466 4430402I18Rik protein_coding protein_coding MGP_AJ_T0051467.1 MGP_AJ_G0024990.1 mouse_genomes_project 19 25967909 26012521 - MGP_AJ_P0051467 4430402I18Rik protein_coding protein_coding MGP_AJ_T0051468.1 MGP_AJ_G0024990.1 mouse_genomes_project 19 25967912 25973607 - 4430402I18Rik protein_coding processed_transcript MGP_AJ_T0051469.1 MGP_AJ_G0024990.1 mouse_genomes_project 19 25968067 26008302 - MGP_AJ_P0051469 4430402I18Rik protein_coding protein_coding MGP_AJ_T0051470.1 MGP_AJ_G0024990.1 mouse_genomes_project 19 25968067 26008302 - MGP_AJ_P0051470 4430402I18Rik protein_coding protein_coding MGP_AJ_T0051471.1 MGP_AJ_G0024990.1 mouse_genomes_project 19 25993113 26008627 - MGP_AJ_P0051471 4430402I18Rik protein_coding protein_coding MGP_AJ_T0051399.1 MGP_AJ_G0024973.1 mouse_genomes_project 19 21660449 21666119 + MGP_AJ_P0051399 Tmem252 protein_coding protein_coding MGP_AJ_T0050416.1 MGP_AJ_G0024626.1 mouse_genomes_project 19 1073132 1084863 - MGP_AJ_P0050416 Ankrd13d protein_coding protein_coding MGP_AJ_T0050417.1 MGP_AJ_G0024626.1 mouse_genomes_project 19 1073132 1085823 - MGP_AJ_P0050417 Ankrd13d protein_coding protein_coding MGP_AJ_T0050418.1 MGP_AJ_G0024626.1 mouse_genomes_project 19 1073134 1085825 - MGP_AJ_P0050418 Ankrd13d protein_coding nonsense_mediated_decay MGP_AJ_T0050419.1 MGP_AJ_G0024626.1 mouse_genomes_project 19 1073350 1074247 - MGP_AJ_P0050419 Ankrd13d protein_coding nonsense_mediated_decay MGP_AJ_T0050420.1 MGP_AJ_G0024626.1 mouse_genomes_project 19 1075573 1083699 - MGP_AJ_P0050420 Ankrd13d protein_coding nonsense_mediated_decay MGP_AJ_T0050421.1 MGP_AJ_G0024626.1 mouse_genomes_project 19 1082153 1085825 - Ankrd13d protein_coding processed_transcript MGP_AJ_T0050422.1 MGP_AJ_G0024626.1 mouse_genomes_project 19 1083333 1085721 - MGP_AJ_P0050422 Ankrd13d protein_coding protein_coding MGP_AJ_T0050452.1 MGP_AJ_G0024631.1 mouse_genomes_project 19 1304627 1306421 - MGP_AJ_P0050452 2010003K11Rik protein_coding protein_coding MGP_AJ_T0010279.1 MGP_AJ_G0008401.1 mouse_genomes_project 19 1434136 1434194 - Mir6986 miRNA miRNA MGP_AJ_T0100996.1 MGP_AJ_G0038962.1 mouse_genomes_project 19 22153776 22153908 - Gm24252 snoRNA snoRNA MGP_AJ_T0052256.1 MGP_AJ_G0025253.1 mouse_genomes_project 19 56089679 56130207 + MGP_AJ_P0052256 Ccdc172 protein_coding protein_coding MGP_AJ_T0051609.1 MGP_AJ_G0025045.1 mouse_genomes_project 19 33265674 33287231 + MGP_AJ_P0051609 Rpp30 protein_coding protein_coding MGP_AJ_T0050606.1 MGP_AJ_G0024689.1 mouse_genomes_project 19 2543499 2546234 + MGP_AJ_P0050606 Kcnk7 protein_coding protein_coding MGP_AJ_T0051190.1 MGP_AJ_G0024850.1 mouse_genomes_project 19 8392038 8406690 + MGP_AJ_P0051190 Ms4a6b protein_coding protein_coding MGP_AJ_T0051191.1 MGP_AJ_G0024850.1 mouse_genomes_project 19 8394122 8397292 + Ms4a6b protein_coding retained_intron MGP_AJ_T0051192.1 MGP_AJ_G0024850.1 mouse_genomes_project 19 8397107 8402853 + MGP_AJ_P0051192 Ms4a6b protein_coding nonsense_mediated_decay MGP_AJ_T0050685.1 MGP_AJ_G0024712.1 mouse_genomes_project 19 2939673 2943850 - MGP_AJ_P0050685 Zfpl1 protein_coding protein_coding MGP_AJ_T0050686.1 MGP_AJ_G0024712.1 mouse_genomes_project 19 2939676 2941738 - Zfpl1 protein_coding retained_intron MGP_AJ_T0050687.1 MGP_AJ_G0024712.1 mouse_genomes_project 19 2940079 2943822 - MGP_AJ_P0050687 Zfpl1 protein_coding protein_coding MGP_AJ_T0050688.1 MGP_AJ_G0024712.1 mouse_genomes_project 19 2940771 2943600 - MGP_AJ_P0050688 Zfpl1 protein_coding protein_coding MGP_AJ_T0050689.1 MGP_AJ_G0024712.1 mouse_genomes_project 19 2941101 2943801 - Zfpl1 protein_coding retained_intron MGP_AJ_T0050690.1 MGP_AJ_G0024712.1 mouse_genomes_project 19 2941121 2943811 - MGP_AJ_P0050690 Zfpl1 protein_coding nonsense_mediated_decay MGP_AJ_T0050691.1 MGP_AJ_G0024712.1 mouse_genomes_project 19 2941162 2943214 - Zfpl1 protein_coding retained_intron MGP_AJ_T0050692.1 MGP_AJ_G0024712.1 mouse_genomes_project 19 2941167 2943851 - MGP_AJ_P0050692 Zfpl1 protein_coding protein_coding MGP_AJ_T0050693.1 MGP_AJ_G0024712.1 mouse_genomes_project 19 2941512 2943834 - MGP_AJ_P0050693 Zfpl1 protein_coding protein_coding MGP_AJ_T0051225.1 MGP_AJ_G0024869.1 mouse_genomes_project 19 8986543 8987481 - MGP_AJ_P0051225 Olfr1427 protein_coding protein_coding MGP_AJ_T0051657.1 MGP_AJ_G0025058.1 mouse_genomes_project 19 34769754 34901617 + MGP_AJ_P0051657 Exoc6 protein_coding protein_coding MGP_AJ_T0051596.1 MGP_AJ_G0025039.1 mouse_genomes_project 19 31749428 31773812 - MGP_AJ_P0051596 Ifit1bl2 protein_coding protein_coding MGP_AJ_T0051597.1 MGP_AJ_G0025039.1 mouse_genomes_project 19 31749430 31784467 - MGP_AJ_P0051597 Ifit1bl2 protein_coding protein_coding MGP_AJ_T0051165.1 MGP_AJ_G0024844.1 mouse_genomes_project 19 8141542 8155020 - MGP_AJ_P0051165 Ms4a7 protein_coding protein_coding MGP_AJ_T0051166.1 MGP_AJ_G0024844.1 mouse_genomes_project 19 8141542 8156469 - MGP_AJ_P0051166 Ms4a7 protein_coding protein_coding MGP_AJ_T0051167.1 MGP_AJ_G0024844.1 mouse_genomes_project 19 8141909 8156441 - MGP_AJ_P0051167 Ms4a7 protein_coding protein_coding MGP_AJ_T0051168.1 MGP_AJ_G0024844.1 mouse_genomes_project 19 8141912 8145084 - MGP_AJ_P0051168 Ms4a7 protein_coding protein_coding MGP_AJ_T0051169.1 MGP_AJ_G0024844.1 mouse_genomes_project 19 8142008 8156471 - Ms4a7 protein_coding retained_intron MGP_AJ_T0050642.1 MGP_AJ_G0024702.1 mouse_genomes_project 19 2842349 2869696 - MGP_AJ_P0050642 Capn1 protein_coding protein_coding MGP_AJ_T0050643.1 MGP_AJ_G0024702.1 mouse_genomes_project 19 2842349 2869118 - MGP_AJ_P0050643 Capn1 protein_coding protein_coding MGP_AJ_T0052276.1 MGP_AJ_G0025266.1 mouse_genomes_project 19 57478997 57524144 - MGP_AJ_P0052276 Rab11fip2 protein_coding protein_coding MGP_AJ_T0052277.1 MGP_AJ_G0025266.1 mouse_genomes_project 19 57479809 57523855 - MGP_AJ_P0052277 Rab11fip2 protein_coding protein_coding MGP_AJ_T0052278.1 MGP_AJ_G0025266.1 mouse_genomes_project 19 57483029 57523491 - MGP_AJ_P0052278 Rab11fip2 protein_coding protein_coding MGP_AJ_T0050384.1 MGP_AJ_G0024615.1 mouse_genomes_project 19 941319 947249 + MGP_AJ_P0050384 Gpr152 protein_coding protein_coding MGP_AJ_T0052144.1 MGP_AJ_G0025230.1 mouse_genomes_project 19 52603778 52639068 - MGP_AJ_P0052144 Gpam protein_coding unknown_likely_coding MGP_AJ_T0050870.1 MGP_AJ_G0024751.1 mouse_genomes_project 19 3860358 3874013 - MGP_AJ_P0050870 Flrt1 protein_coding protein_coding MGP_AJ_T0010306.1 MGP_AJ_G0008428.1 mouse_genomes_project 19 32118521 32118595 + Mir1950 miRNA miRNA MGP_AJ_T0050464.1 MGP_AJ_G0024638.1 mouse_genomes_project 19 1574194 1580319 + Rbm4b protein_coding retained_intron MGP_AJ_T0050465.1 MGP_AJ_G0024638.1 mouse_genomes_project 19 1574216 1578785 + Rbm4b protein_coding retained_intron MGP_AJ_T0050466.1 MGP_AJ_G0024638.1 mouse_genomes_project 19 1574222 1583385 + MGP_AJ_P0050466 Rbm4b protein_coding protein_coding MGP_AJ_T0050467.1 MGP_AJ_G0024638.1 mouse_genomes_project 19 1574232 1581573 + MGP_AJ_P0050467 Rbm4b protein_coding nonsense_mediated_decay MGP_AJ_T0050468.1 MGP_AJ_G0024638.1 mouse_genomes_project 19 1578838 1584510 + Rbm4b protein_coding retained_intron MGP_AJ_T0050469.1 MGP_AJ_G0024638.1 mouse_genomes_project 19 1581907 1583086 + Rbm4b protein_coding processed_transcript MGP_AJ_T0051704.1 MGP_AJ_G0025080.1 mouse_genomes_project 19 36898537 36952122 - MGP_AJ_P0051704 protein_coding protein_coding MGP_AJ_T0050383.1 MGP_AJ_G0024614.1 mouse_genomes_project 19 937330 941130 - MGP_AJ_P0050383 Cabp4 protein_coding protein_coding MGP_AJ_T0099737.1 MGP_AJ_G0037703.1 mouse_genomes_project 19 44491871 44491978 + Gm23140 snRNA snRNA MGP_AJ_T0051251.1 MGP_AJ_G0024888.1 mouse_genomes_project 19 9529787 9553902 + MGP_AJ_P0051251 Keg1 protein_coding protein_coding MGP_AJ_T0051252.1 MGP_AJ_G0024888.1 mouse_genomes_project 19 9529788 9550039 + Keg1 protein_coding processed_transcript MGP_AJ_T0051253.1 MGP_AJ_G0024888.1 mouse_genomes_project 19 9529794 9552556 + Keg1 protein_coding retained_intron MGP_AJ_T0051254.1 MGP_AJ_G0024888.1 mouse_genomes_project 19 9529794 9553007 + MGP_AJ_P0051254 Keg1 protein_coding protein_coding MGP_AJ_T0051255.1 MGP_AJ_G0024888.1 mouse_genomes_project 19 9529805 9548823 + Keg1 protein_coding retained_intron MGP_AJ_T0051256.1 MGP_AJ_G0024888.1 mouse_genomes_project 19 9529815 9548745 + Keg1 protein_coding retained_intron MGP_AJ_T0051257.1 MGP_AJ_G0024888.1 mouse_genomes_project 19 9529815 9553117 + MGP_AJ_P0051257 Keg1 protein_coding protein_coding MGP_AJ_T0051529.1 MGP_AJ_G0025009.1 mouse_genomes_project 19 27173358 27251930 - MGP_AJ_P0051529 Gldc protein_coding protein_coding MGP_AJ_T0052271.1 MGP_AJ_G0025263.1 mouse_genomes_project 19 56855304 56890968 + MGP_AJ_P0052271 Slc18a2 protein_coding protein_coding MGP_AJ_T0052056.1 MGP_AJ_G0025195.1 mouse_genomes_project 19 44446121 44457015 + MGP_AJ_P0052056 Ina protein_coding protein_coding MGP_AJ_T0051319.1 MGP_AJ_G0024938.1 mouse_genomes_project 19 13804489 13806004 - MGP_AJ_P0051319 Foxb2 protein_coding protein_coding MGP_AJ_T0052052.1 MGP_AJ_G0025194.1 mouse_genomes_project 19 44316849 44399777 - MGP_AJ_P0052052 Nt5c2 protein_coding protein_coding MGP_AJ_T0052053.1 MGP_AJ_G0025194.1 mouse_genomes_project 19 44316849 44392135 - MGP_AJ_P0052053 Nt5c2 protein_coding protein_coding MGP_AJ_T0052054.1 MGP_AJ_G0025194.1 mouse_genomes_project 19 44317846 44446577 - MGP_AJ_P0052054 Nt5c2 protein_coding protein_coding MGP_AJ_T0052055.1 MGP_AJ_G0025194.1 mouse_genomes_project 19 44321531 44328434 - MGP_AJ_P0052055 Nt5c2 protein_coding nonsense_mediated_decay MGP_AJ_T0052063.1 MGP_AJ_G0025201.1 mouse_genomes_project 19 44577025 44580145 - MGP_AJ_P0052063 Calhm1 protein_coding protein_coding MGP_AJ_T0051600.1 MGP_AJ_G0025042.1 mouse_genomes_project 19 31953394 32022596 - MGP_AJ_P0051600 Pank1 protein_coding protein_coding MGP_AJ_T0051601.1 MGP_AJ_G0025042.1 mouse_genomes_project 19 31953395 32021058 - MGP_AJ_P0051601 Pank1 protein_coding protein_coding MGP_AJ_T0051810.1 MGP_AJ_G0025118.1 mouse_genomes_project 19 39474138 39478469 + MGP_AJ_P0051810 Marveld1 protein_coding protein_coding MGP_AJ_T0051811.1 MGP_AJ_G0025118.1 mouse_genomes_project 19 39474473 39478228 + MGP_AJ_P0051811 Marveld1 protein_coding protein_coding MGP_AJ_T0100988.1 MGP_AJ_G0038954.1 mouse_genomes_project 19 8480622 8480672 - Gm24599 snoRNA snoRNA MGP_AJ_T0050929.1 MGP_AJ_G0024766.1 mouse_genomes_project 19 4679618 4732925 - protein_coding processed_transcript MGP_AJ_T0050566.1 MGP_AJ_G0024677.1 mouse_genomes_project 19 2317045 2322717 - MGP_AJ_P0050566 Mus81 protein_coding nonsense_mediated_decay MGP_AJ_T0050567.1 MGP_AJ_G0024677.1 mouse_genomes_project 19 2317532 2323103 - MGP_AJ_P0050567 Mus81 protein_coding protein_coding MGP_AJ_T0050568.1 MGP_AJ_G0024677.1 mouse_genomes_project 19 2317540 2318274 - Mus81 protein_coding retained_intron MGP_AJ_T0050569.1 MGP_AJ_G0024677.1 mouse_genomes_project 19 2317551 2322636 - Mus81 protein_coding retained_intron MGP_AJ_T0050570.1 MGP_AJ_G0024677.1 mouse_genomes_project 19 2317553 2318664 - Mus81 protein_coding retained_intron MGP_AJ_T0050571.1 MGP_AJ_G0024677.1 mouse_genomes_project 19 2317554 2318668 - Mus81 protein_coding retained_intron MGP_AJ_T0050572.1 MGP_AJ_G0024677.1 mouse_genomes_project 19 2317558 2322986 - MGP_AJ_P0050572 Mus81 protein_coding nonsense_mediated_decay MGP_AJ_T0050573.1 MGP_AJ_G0024677.1 mouse_genomes_project 19 2318390 2319586 - Mus81 protein_coding retained_intron MGP_AJ_T0050574.1 MGP_AJ_G0024677.1 mouse_genomes_project 19 2318912 2320511 - Mus81 protein_coding processed_transcript MGP_AJ_T0050575.1 MGP_AJ_G0024677.1 mouse_genomes_project 19 2320188 2322967 - MGP_AJ_P0050575 Mus81 protein_coding nonsense_mediated_decay MGP_AJ_T0050576.1 MGP_AJ_G0024677.1 mouse_genomes_project 19 2322168 2323012 - Mus81 protein_coding retained_intron MGP_AJ_T0051283.1 MGP_AJ_G0024912.1 mouse_genomes_project 19 10309237 10320312 + MGP_AJ_P0051283 Olfr1471 protein_coding protein_coding MGP_AJ_T0051012.1 MGP_AJ_G0024786.1 mouse_genomes_project 19 5835638 5844465 + MGP_AJ_P0051012 Lbhd1 protein_coding protein_coding MGP_AJ_T0051013.1 MGP_AJ_G0024786.1 mouse_genomes_project 19 5835830 5838948 + Lbhd1 protein_coding retained_intron MGP_AJ_T0051014.1 MGP_AJ_G0024786.1 mouse_genomes_project 19 5835836 5839165 + MGP_AJ_P0051014 Lbhd1 protein_coding protein_coding MGP_AJ_T0051021.1 MGP_AJ_G0024786.1 mouse_genomes_project 19 5841184 5842496 + Lbhd1 protein_coding processed_transcript MGP_AJ_T0098429.1 MGP_AJ_G0036413.1 mouse_genomes_project 19 9922693 9923210 - pseudogene pseudogene MGP_AJ_T0051667.1 MGP_AJ_G0025064.1 mouse_genomes_project 19 35334866 35343470 - MGP_AJ_P0051667 Rbp4 protein_coding protein_coding MGP_AJ_T0051668.1 MGP_AJ_G0025064.1 mouse_genomes_project 19 35334866 35342959 - MGP_AJ_P0051668 Rbp4 protein_coding protein_coding MGP_AJ_T0010326.1 MGP_AJ_G0008448.1 mouse_genomes_project 19 58182897 58183087 + miRNA miRNA MGP_AJ_T0099726.1 MGP_AJ_G0037692.1 mouse_genomes_project 19 20263654 20263761 + Gm24263 snRNA snRNA MGP_AJ_T0052298.1 MGP_AJ_G0025274.1 mouse_genomes_project 19 58470605 58482142 - MGP_AJ_P0052298 Prdx3 protein_coding protein_coding MGP_AJ_T0050825.1 MGP_AJ_G0024731.1 mouse_genomes_project 19 3403009 3410184 - MGP_AJ_P0050825 Slc22a12 protein_coding protein_coding MGP_AJ_T0050826.1 MGP_AJ_G0024731.1 mouse_genomes_project 19 3403229 3408714 - Slc22a12 protein_coding processed_transcript MGP_AJ_T0050827.1 MGP_AJ_G0024731.1 mouse_genomes_project 19 3404901 3409876 - MGP_AJ_P0050827 Slc22a12 protein_coding protein_coding MGP_AJ_T0050683.1 MGP_AJ_G0024711.1 mouse_genomes_project 19 2938944 2939697 + MGP_AJ_P0050683 Tmem262 protein_coding protein_coding MGP_AJ_T0050684.1 MGP_AJ_G0024711.1 mouse_genomes_project 19 2938944 2939700 + MGP_AJ_P0050684 Tmem262 protein_coding protein_coding MGP_AJ_T0052029.1 MGP_AJ_G0025184.1 mouse_genomes_project 19 43795882 43814485 - MGP_AJ_P0052029 Actr1a protein_coding protein_coding MGP_AJ_T0050697.1 MGP_AJ_G0024714.1 mouse_genomes_project 19 2964783 2978429 + MGP_AJ_P0050697 Naaladl1 protein_coding protein_coding MGP_AJ_T0051273.1 MGP_AJ_G0024902.1 mouse_genomes_project 19 9946359 9947313 - MGP_AJ_P0051273 Olfr1457 protein_coding protein_coding MGP_AJ_T0050937.1 MGP_AJ_G0024771.1 mouse_genomes_project 19 5658968 5674805 - MGP_AJ_P0050937 Slc3a2 protein_coding protein_coding MGP_AJ_T0050938.1 MGP_AJ_G0024771.1 mouse_genomes_project 19 5660710 5664757 - MGP_AJ_P0050938 Slc3a2 protein_coding protein_coding MGP_AJ_T0050939.1 MGP_AJ_G0024771.1 mouse_genomes_project 19 5661136 5664758 - MGP_AJ_P0050939 Slc3a2 protein_coding protein_coding MGP_AJ_T0050940.1 MGP_AJ_G0024771.1 mouse_genomes_project 19 5661168 5665835 - MGP_AJ_P0050940 Slc3a2 protein_coding protein_coding MGP_AJ_T0050941.1 MGP_AJ_G0024771.1 mouse_genomes_project 19 5664558 5674908 - Slc3a2 protein_coding retained_intron MGP_AJ_T0050942.1 MGP_AJ_G0024771.1 mouse_genomes_project 19 5664810 5665498 - MGP_AJ_P0050942 Slc3a2 protein_coding protein_coding MGP_AJ_T0050943.1 MGP_AJ_G0024771.1 mouse_genomes_project 19 5664821 5665585 - MGP_AJ_P0050943 Slc3a2 protein_coding protein_coding MGP_AJ_T0098433.1 MGP_AJ_G0036417.1 mouse_genomes_project 19 57820376 57821714 + pseudogene pseudogene MGP_AJ_T0010309.1 MGP_AJ_G0008431.1 mouse_genomes_project 19 38199105 38199192 + Mir8092 miRNA miRNA MGP_AJ_T0052299.1 MGP_AJ_G0025275.1 mouse_genomes_project 19 58497701 58698974 + MGP_AJ_P0052299 Grk5 protein_coding protein_coding MGP_AJ_T0017665.1 MGP_AJ_G0015349.1 mouse_genomes_project 19 1243301 1252592 + A930001C03Rik processed_transcript processed_transcript MGP_AJ_T0017666.1 MGP_AJ_G0015349.1 mouse_genomes_project 19 1243856 1252449 + A930001C03Rik processed_transcript processed_transcript MGP_AJ_T0017667.1 MGP_AJ_G0015349.1 mouse_genomes_project 19 1247989 1252129 + A930001C03Rik processed_transcript processed_transcript MGP_AJ_T0017668.1 MGP_AJ_G0015349.1 mouse_genomes_project 19 1251078 1252598 + A930001C03Rik processed_transcript retained_intron MGP_AJ_T0051820.1 MGP_AJ_G0025120.1 mouse_genomes_project 19 39527112 39531391 - MGP_AJ_P0051820 Sfrp5 protein_coding protein_coding MGP_AJ_T0098431.1 MGP_AJ_G0036415.1 mouse_genomes_project 19 13711196 13711753 + pseudogene pseudogene MGP_AJ_T0050508.1 MGP_AJ_G0024654.1 mouse_genomes_project 19 1869525 1875789 + MGP_AJ_P0050508 Rin1 protein_coding protein_coding MGP_AJ_T0050509.1 MGP_AJ_G0024654.1 mouse_genomes_project 19 1869576 1875798 + MGP_AJ_P0050509 Rin1 protein_coding unknown_likely_coding MGP_AJ_T0051226.1 MGP_AJ_G0024870.1 mouse_genomes_project 19 8996436 8997381 - MGP_AJ_P0051226 Olfr1428 protein_coding protein_coding MGP_AJ_T0051146.1 MGP_AJ_G0024837.1 mouse_genomes_project 19 7923579 7960417 - MGP_AJ_P0051146 1700017D01Rik protein_coding protein_coding MGP_AJ_T0051147.1 MGP_AJ_G0024837.1 mouse_genomes_project 19 7936639 7939103 - 1700017D01Rik protein_coding retained_intron MGP_AJ_T0051043.1 MGP_AJ_G0024796.1 mouse_genomes_project 19 5943031 5973053 + MGP_AJ_P0051043 Ahnak protein_coding protein_coding MGP_AJ_T0051044.1 MGP_AJ_G0024796.1 mouse_genomes_project 19 5943031 6030741 + MGP_AJ_P0051044 Ahnak protein_coding protein_coding MGP_AJ_T0100983.1 MGP_AJ_G0038949.1 mouse_genomes_project 19 5676787 5676852 + Gm22744 snoRNA snoRNA MGP_AJ_T0051574.1 MGP_AJ_G0025029.1 mouse_genomes_project 19 31204983 31223182 + MGP_AJ_P0051574 Lipn protein_coding protein_coding MGP_AJ_T0051575.1 MGP_AJ_G0025029.1 mouse_genomes_project 19 31205003 31211249 + MGP_AJ_P0051575 Lipn protein_coding protein_coding MGP_AJ_T0051576.1 MGP_AJ_G0025029.1 mouse_genomes_project 19 31205154 31218780 + MGP_AJ_P0051576 Lipn protein_coding nonsense_mediated_decay MGP_AJ_T0051634.1 MGP_AJ_G0025052.1 mouse_genomes_project 19 34122843 34212709 + MGP_AJ_P0051634 Btaf1 protein_coding protein_coding MGP_AJ_T0052090.1 MGP_AJ_G0025210.1 mouse_genomes_project 19 45182070 45284199 - MGP_AJ_P0052090 Cfap43 protein_coding protein_coding MGP_AJ_T0052091.1 MGP_AJ_G0025210.1 mouse_genomes_project 19 45182115 45207555 - Cfap43 protein_coding processed_transcript MGP_AJ_T0052092.1 MGP_AJ_G0025210.1 mouse_genomes_project 19 45182115 45207555 - Cfap43 protein_coding processed_transcript MGP_AJ_T0052093.1 MGP_AJ_G0025210.1 mouse_genomes_project 19 45198294 45207563 - Cfap43 protein_coding processed_transcript MGP_AJ_T0052094.1 MGP_AJ_G0025210.1 mouse_genomes_project 19 45232459 45381947 - Cfap43 protein_coding retained_intron MGP_AJ_T0052095.1 MGP_AJ_G0025210.1 mouse_genomes_project 19 45241150 45258721 - Cfap43 protein_coding processed_transcript MGP_AJ_T0052096.1 MGP_AJ_G0025210.1 mouse_genomes_project 19 45269971 45284178 - Cfap43 protein_coding retained_intron MGP_AJ_T0052103.1 MGP_AJ_G0025210.1 mouse_genomes_project 19 45354264 45381959 - MGP_AJ_P0052103 Cfap43 protein_coding protein_coding MGP_AJ_T0052272.1 MGP_AJ_G0025264.1 mouse_genomes_project 19 56891039 56940236 - MGP_AJ_P0052272 Pdzd8 protein_coding protein_coding MGP_AJ_T0051444.1 MGP_AJ_G0024987.1 mouse_genomes_project 19 24796443 24864931 - Rfx3 protein_coding processed_transcript MGP_AJ_T0051445.1 MGP_AJ_G0024987.1 mouse_genomes_project 19 24796758 24961516 - MGP_AJ_P0051445 Rfx3 protein_coding protein_coding MGP_AJ_T0051446.1 MGP_AJ_G0024987.1 mouse_genomes_project 19 24796758 24936783 - MGP_AJ_P0051446 Rfx3 protein_coding nonsense_mediated_decay MGP_AJ_T0051447.1 MGP_AJ_G0024987.1 mouse_genomes_project 19 24833254 25047800 - Rfx3 protein_coding retained_intron MGP_AJ_T0051448.1 MGP_AJ_G0024987.1 mouse_genomes_project 19 24902525 25047424 - MGP_AJ_P0051448 Rfx3 protein_coding protein_coding MGP_AJ_T0102454.1 MGP_AJ_G0040196.1 mouse_genomes_project 19 30989940 30993347 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0013383.1 MGP_AJ_G0011478.1 mouse_genomes_project 19 13193203 13194183 + processed_pseudogene processed_pseudogene MGP_AJ_T0102453.1 MGP_AJ_G0040195.1 mouse_genomes_project 19 9044389 9045304 - unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0010318.1 MGP_AJ_G0008440.1 mouse_genomes_project 19 45200883 45201019 - Mir8090 miRNA miRNA MGP_AJ_T0052151.1 MGP_AJ_G0025232.1 mouse_genomes_project 19 52737021 52781219 - MGP_AJ_P0052151 Gucy2g protein_coding protein_coding MGP_AJ_T0052209.1 MGP_AJ_G0025245.1 mouse_genomes_project 19 54376974 54420804 + MGP_AJ_P0052209 Tdrd1 protein_coding protein_coding MGP_AJ_T0052210.1 MGP_AJ_G0025245.1 mouse_genomes_project 19 54377040 54420804 + MGP_AJ_P0052210 Tdrd1 protein_coding protein_coding MGP_AJ_T0052211.1 MGP_AJ_G0025245.1 mouse_genomes_project 19 54377051 54420804 + MGP_AJ_P0052211 Tdrd1 protein_coding protein_coding MGP_AJ_T0052212.1 MGP_AJ_G0025245.1 mouse_genomes_project 19 54381472 54420804 + MGP_AJ_P0052212 Tdrd1 protein_coding protein_coding MGP_AJ_T0098936.1 MGP_AJ_G0036914.1 mouse_genomes_project 19 25617879 25620636 - 4933413C19Rik sense_intronic sense_intronic MGP_AJ_T0051775.1 MGP_AJ_G0025106.1 mouse_genomes_project 19 39179758 39213202 - MGP_AJ_P0051775 Rrp12 protein_coding protein_coding MGP_AJ_T0007080.1 MGP_AJ_G0005812.1 mouse_genomes_project 19 22680650 22681756 - 2610016A17Rik lincRNA lincRNA MGP_AJ_T0007081.1 MGP_AJ_G0005812.1 mouse_genomes_project 19 22680688 22681739 - 2610016A17Rik lincRNA lincRNA MGP_AJ_T0007082.1 MGP_AJ_G0005812.1 mouse_genomes_project 19 22681081 22681770 - 2610016A17Rik lincRNA lincRNA MGP_AJ_T0007090.1 MGP_AJ_G0005817.1 mouse_genomes_project 19 30517276 30528734 - Gm7237 lincRNA lincRNA MGP_AJ_T0050842.1 MGP_AJ_G0024737.1 mouse_genomes_project 19 3683704 3686659 - MGP_AJ_P0050842 Tex40 protein_coding protein_coding MGP_AJ_T0101001.1 MGP_AJ_G0038967.1 mouse_genomes_project 19 40028547 40028673 - Gm25216 snoRNA snoRNA MGP_AJ_T0013372.1 MGP_AJ_G0011467.1 mouse_genomes_project 19 2901411 2901543 - processed_pseudogene processed_pseudogene MGP_AJ_T0051924.1 MGP_AJ_G0025155.1 mouse_genomes_project 19 42386578 42401267 + MGP_AJ_P0051924 Sema4g protein_coding protein_coding MGP_AJ_T0051925.1 MGP_AJ_G0025155.1 mouse_genomes_project 19 42389619 42401264 + MGP_AJ_P0051925 Sema4g protein_coding protein_coding MGP_AJ_T0050335.1 MGP_AJ_G0024603.1 mouse_genomes_project 19 750012 759016 + MGP_AJ_P0050335 Aldh3b2 protein_coding protein_coding MGP_AJ_T0050855.1 MGP_AJ_G0024742.1 mouse_genomes_project 19 3737312 3740632 + MGP_AJ_P0050855 Ppp1r14b protein_coding protein_coding MGP_AJ_T0050856.1 MGP_AJ_G0024742.1 mouse_genomes_project 19 3737513 3739315 + MGP_AJ_P0050856 Ppp1r14b protein_coding unknown_likely_coding MGP_AJ_T0010308.1 MGP_AJ_G0008430.1 mouse_genomes_project 19 36268817 36268881 - Gm23800 miRNA miRNA MGP_AJ_T0010315.1 MGP_AJ_G0008437.1 mouse_genomes_project 19 42206247 42206371 + Mir6405 miRNA miRNA MGP_AJ_T0003853.1 MGP_AJ_G0003448.1 mouse_genomes_project 19 3397875 3399176 - Gm14964 antisense antisense MGP_AJ_T0003854.1 MGP_AJ_G0003448.1 mouse_genomes_project 19 3397953 3398953 - Gm14964 antisense antisense MGP_AJ_T0007118.1 MGP_AJ_G0005837.1 mouse_genomes_project 19 53179886 53240804 - lincRNA lincRNA MGP_AJ_T0051902.1 MGP_AJ_G0025147.1 mouse_genomes_project 19 41775308 41788567 - MGP_AJ_P0051902 Scd1 protein_coding protein_coding MGP_AJ_T0050409.1 MGP_AJ_G0024623.1 mouse_genomes_project 19 1016803 1026067 + MGP_AJ_P0050409 Clcf1 protein_coding protein_coding MGP_AJ_T0050410.1 MGP_AJ_G0024623.1 mouse_genomes_project 19 1016829 1026067 + Clcf1 protein_coding retained_intron MGP_AJ_T0050411.1 MGP_AJ_G0024623.1 mouse_genomes_project 19 1016870 1026067 + MGP_AJ_P0050411 Clcf1 protein_coding nonsense_mediated_decay MGP_AJ_T0050412.1 MGP_AJ_G0024623.1 mouse_genomes_project 19 1017159 1025090 + Clcf1 protein_coding processed_transcript MGP_AJ_T0051290.1 MGP_AJ_G0024919.1 mouse_genomes_project 19 10550296 10551238 + MGP_AJ_P0051290 Olfr1489 protein_coding protein_coding MGP_AJ_T0013396.1 MGP_AJ_G0011491.1 mouse_genomes_project 19 43622875 43623352 - processed_pseudogene processed_pseudogene MGP_AJ_T0051698.1 MGP_AJ_G0025076.1 mouse_genomes_project 19 36507011 36563677 + MGP_AJ_P0051698 Cyp2c29 protein_coding protein_coding MGP_AJ_T0051699.1 MGP_AJ_G0025076.1 mouse_genomes_project 19 36519879 36563728 + MGP_AJ_P0051699 Cyp2c29 protein_coding protein_coding MGP_AJ_T0051700.1 MGP_AJ_G0025076.1 mouse_genomes_project 19 36519879 36563742 + MGP_AJ_P0051700 Cyp2c29 protein_coding nonsense_mediated_decay MGP_AJ_T0050264.1 MGP_AJ_G0024589.1 mouse_genomes_project 19 47926 58107 + MGP_AJ_P0050264 Mrpl21 protein_coding protein_coding MGP_AJ_T0050265.1 MGP_AJ_G0024589.1 mouse_genomes_project 19 48080 54449 + Mrpl21 protein_coding retained_intron MGP_AJ_T0050266.1 MGP_AJ_G0024589.1 mouse_genomes_project 19 48085 50363 + Mrpl21 protein_coding retained_intron MGP_AJ_T0050267.1 MGP_AJ_G0024589.1 mouse_genomes_project 19 48085 56471 + MGP_AJ_P0050267 Mrpl21 protein_coding protein_coding MGP_AJ_T0050268.1 MGP_AJ_G0024589.1 mouse_genomes_project 19 48089 52892 + MGP_AJ_P0050268 Mrpl21 protein_coding nonsense_mediated_decay MGP_AJ_T0050269.1 MGP_AJ_G0024589.1 mouse_genomes_project 19 51848 56465 + Mrpl21 protein_coding retained_intron MGP_AJ_T0051035.1 MGP_AJ_G0024794.1 mouse_genomes_project 19 5906826 5919435 + MGP_AJ_P0051035 Tut1 protein_coding protein_coding MGP_AJ_T0051259.1 MGP_AJ_G0024890.1 mouse_genomes_project 19 9600089 9602062 - MGP_AJ_P0051259 Cntf protein_coding protein_coding MGP_AJ_T0051976.1 MGP_AJ_G0025173.1 mouse_genomes_project 19 43442952 43457388 - MGP_AJ_P0051976 Ldb1 protein_coding protein_coding MGP_AJ_T0051977.1 MGP_AJ_G0025173.1 mouse_genomes_project 19 43444021 43457748 - MGP_AJ_P0051977 Ldb1 protein_coding protein_coding MGP_AJ_T0051978.1 MGP_AJ_G0025173.1 mouse_genomes_project 19 43444022 43451061 - MGP_AJ_P0051978 Ldb1 protein_coding protein_coding MGP_AJ_T0051979.1 MGP_AJ_G0025173.1 mouse_genomes_project 19 43444044 43457745 - MGP_AJ_P0051979 Ldb1 protein_coding protein_coding MGP_AJ_T0051980.1 MGP_AJ_G0025173.1 mouse_genomes_project 19 43444117 43457744 - MGP_AJ_P0051980 Ldb1 protein_coding protein_coding MGP_AJ_T0051981.1 MGP_AJ_G0025173.1 mouse_genomes_project 19 43444117 43457448 - MGP_AJ_P0051981 Ldb1 protein_coding protein_coding MGP_AJ_T0051982.1 MGP_AJ_G0025173.1 mouse_genomes_project 19 43445173 43446307 - Ldb1 protein_coding retained_intron MGP_AJ_T0051983.1 MGP_AJ_G0025173.1 mouse_genomes_project 19 43445479 43447440 - Ldb1 protein_coding retained_intron MGP_AJ_T0052152.1 MGP_AJ_G0025233.1 mouse_genomes_project 19 52793291 52836945 + MGP_AJ_P0052152 Acsl5 protein_coding protein_coding MGP_AJ_T0051295.1 MGP_AJ_G0024924.1 mouse_genomes_project 19 10680120 10681187 + MGP_AJ_P0051295 Olfr1496 protein_coding protein_coding MGP_AJ_T0007106.1 MGP_AJ_G0005830.1 mouse_genomes_project 19 42723495 42732225 - Gm28578 lincRNA lincRNA MGP_AJ_T0007107.1 MGP_AJ_G0005830.1 mouse_genomes_project 19 42723515 42724261 - Gm28578 lincRNA lincRNA MGP_AJ_T0007108.1 MGP_AJ_G0005830.1 mouse_genomes_project 19 42729360 42732211 - Gm28578 lincRNA lincRNA MGP_AJ_T0050624.1 MGP_AJ_G0024696.1 mouse_genomes_project 19 2720923 2729573 + MGP_AJ_P0050624 Slc25a45 protein_coding protein_coding MGP_AJ_T0050625.1 MGP_AJ_G0024696.1 mouse_genomes_project 19 2721734 2723703 + MGP_AJ_P0050625 Slc25a45 protein_coding protein_coding MGP_AJ_T0050626.1 MGP_AJ_G0024696.1 mouse_genomes_project 19 2721761 2729579 + MGP_AJ_P0050626 Slc25a45 protein_coding protein_coding MGP_AJ_T0050627.1 MGP_AJ_G0024696.1 mouse_genomes_project 19 2721762 2728292 + MGP_AJ_P0050627 Slc25a45 protein_coding protein_coding MGP_AJ_T0051922.1 MGP_AJ_G0025154.1 mouse_genomes_project 19 42328264 42381322 + MGP_AJ_P0051922 Fam178a protein_coding protein_coding MGP_AJ_T0051923.1 MGP_AJ_G0025154.1 mouse_genomes_project 19 42339964 42381585 + MGP_AJ_P0051923 Fam178a protein_coding unknown_likely_coding MGP_AJ_T0051398.1 MGP_AJ_G0024972.1 mouse_genomes_project 19 21456061 21456916 - MGP_AJ_P0051398 Fam122a protein_coding protein_coding MGP_AJ_T0102452.1 MGP_AJ_G0040194.1 mouse_genomes_project 19 8448649 8452331 + unprocessed_pseudogene unprocessed_pseudogene MGP_AJ_T0003858.1 MGP_AJ_G0003451.1 mouse_genomes_project 19 4156823 4158593 + 1700105P06Rik antisense antisense MGP_AJ_T0010283.1 MGP_AJ_G0008405.1 mouse_genomes_project 19 3129434 3129520 + Mir194-2 miRNA miRNA MGP_AJ_T0051845.1 MGP_AJ_G0025128.1 mouse_genomes_project 19 40792807 40850851 + MGP_AJ_P0051845 Cnnm1 protein_coding protein_coding MGP_AJ_T0051846.1 MGP_AJ_G0025128.1 mouse_genomes_project 19 40792816 40850806 + MGP_AJ_P0051846 Cnnm1 protein_coding unknown_likely_coding MGP_AJ_T0051277.1 MGP_AJ_G0024906.1 mouse_genomes_project 19 10034488 10035412 + MGP_AJ_P0051277 Olfr1462 protein_coding protein_coding MGP_AJ_T0052049.1 MGP_AJ_G0025192.1 mouse_genomes_project 19 44133121 44166883 + MGP_AJ_P0052049 As3mt protein_coding protein_coding MGP_AJ_T0051807.1 MGP_AJ_G0025116.1 mouse_genomes_project 19 39416163 39448564 + MGP_AJ_P0051807 Pi4k2a protein_coding protein_coding MGP_AJ_T0051411.1 MGP_AJ_G0024979.1 mouse_genomes_project 19 22512885 22613691 + MGP_AJ_P0051411 Dmrt1 protein_coding protein_coding MGP_AJ_T0051412.1 MGP_AJ_G0024979.1 mouse_genomes_project 19 22512973 22612856 + MGP_AJ_P0051412 Dmrt1 protein_coding protein_coding MGP_AJ_T0051413.1 MGP_AJ_G0024979.1 mouse_genomes_project 19 22512974 22569053 + Dmrt1 protein_coding processed_transcript MGP_AJ_T0052143.1 MGP_AJ_G0025229.1 mouse_genomes_project 19 51564391 51568192 + MGP_AJ_P0052143 Adra2a protein_coding protein_coding MGP_AJ_T0051133.1 MGP_AJ_G0024831.1 mouse_genomes_project 19 7754687 7762443 + MGP_AJ_P0051133 Ptgdr2 protein_coding protein_coding MGP_AJ_T0101005.1 MGP_AJ_G0038971.1 mouse_genomes_project 19 53817704 53817832 - Gm22271 snoRNA snoRNA MGP_AJ_T0051686.1 MGP_AJ_G0025070.1 mouse_genomes_project 19 36035826 36070180 - MGP_AJ_P0051686 Noc3l protein_coding protein_coding MGP_AJ_T0052060.1 MGP_AJ_G0025199.1 mouse_genomes_project 19 44526075 44566258 + MGP_AJ_P0052060 Pdcd11 protein_coding protein_coding MGP_AJ_T0100978.1 MGP_AJ_G0038944.1 mouse_genomes_project 19 879484 879699 - Gm23927 snoRNA snoRNA MGP_AJ_T0051170.1 MGP_AJ_G0024845.1 mouse_genomes_project 19 8195379 8217976 + MGP_AJ_P0051170 Ms4a4a protein_coding protein_coding MGP_AJ_T0051016.1 MGP_AJ_G0024788.1 mouse_genomes_project 19 5840797 5846814 + MGP_AJ_P0051016 Ints5 protein_coding protein_coding MGP_AJ_T0051022.1 MGP_AJ_G0024788.1 mouse_genomes_project 19 5842366 5847062 + Ints5 protein_coding processed_transcript MGP_AJ_T0051023.1 MGP_AJ_G0024788.1 mouse_genomes_project 19 5844824 5850146 + MGP_AJ_P0051023 Ints5 protein_coding protein_coding MGP_AJ_T0010299.1 MGP_AJ_G0008421.1 mouse_genomes_project 19 20114512 20114633 + Mir1192 miRNA miRNA MGP_AJ_T0051480.1 MGP_AJ_G0024996.1 mouse_genomes_project 19 26372886 26377532 - MGP_AJ_P0051480 Insl6 protein_coding protein_coding MGP_AJ_T0051279.1 MGP_AJ_G0024908.1 mouse_genomes_project 19 10180850 10183055 - MGP_AJ_P0051279 Olfr1465 protein_coding protein_coding MGP_AJ_T0052089.1 MGP_AJ_G0025209.1 mouse_genomes_project 19 45176304 45180082 + MGP_AJ_P0052089 Sfr1 protein_coding protein_coding MGP_AJ_T0050581.1 MGP_AJ_G0024682.1 mouse_genomes_project 19 2403603 2406791 + MGP_AJ_P0050581 Ap5b1 protein_coding protein_coding MGP_AJ_T0052128.1 MGP_AJ_G0025221.1 mouse_genomes_project 19 50870859 50871060 - MGP_AJ_P0052128 Gm10197 protein_coding protein_coding MGP_AJ_T0050470.1 MGP_AJ_G0024639.1 mouse_genomes_project 19 1601708 1611741 - MGP_AJ_P0050470 protein_coding protein_coding MGP_AJ_T0050473.1 MGP_AJ_G0024639.1 mouse_genomes_project 19 1602568 1611691 - MGP_AJ_P0050473 protein_coding protein_coding MGP_AJ_T0050474.1 MGP_AJ_G0024639.1 mouse_genomes_project 19 1602690 1611740 - MGP_AJ_P0050474 protein_coding protein_coding MGP_AJ_T0050476.1 MGP_AJ_G0024639.1 mouse_genomes_project 19 1605188 1611700 - MGP_AJ_P0050476 protein_coding protein_coding MGP_AJ_T0050477.1 MGP_AJ_G0024639.1 mouse_genomes_project 19 1607483 1611723 - protein_coding retained_intron MGP_AJ_T0101007.1 MGP_AJ_G0038973.1 mouse_genomes_project 19 58378716 58378835 - Gm26158 snoRNA snoRNA MGP_AJ_T0052045.1 MGP_AJ_G0025190.1 mouse_genomes_project 19 44090677 44096487 - MGP_AJ_P0052045 Cyp17a1 protein_coding protein_coding MGP_AJ_T0052046.1 MGP_AJ_G0025190.1 mouse_genomes_project 19 44091599 44093026 - Cyp17a1 protein_coding retained_intron MGP_AJ_T0052047.1 MGP_AJ_G0025190.1 mouse_genomes_project 19 44094238 44094804 - Cyp17a1 protein_coding retained_intron MGP_AJ_T0050930.1 MGP_AJ_G0024767.1 mouse_genomes_project 19 4684979 5143686 - MGP_AJ_P0050930 protein_coding protein_coding MGP_AJ_T0050933.1 MGP_AJ_G0024769.1 mouse_genomes_project 19 5570096 5580397 + MGP_AJ_P0050933 Slc22a6 protein_coding protein_coding MGP_AJ_T0050651.1 MGP_AJ_G0024704.1 mouse_genomes_project 19 2910337 2914491 - MGP_AJ_P0050651 Mrpl49 protein_coding protein_coding MGP_AJ_T0052244.1 MGP_AJ_G0025250.1 mouse_genomes_project 19 55017286 55055985 + MGP_AJ_P0052244 Trub1 protein_coding protein_coding MGP_AJ_T0052245.1 MGP_AJ_G0025250.1 mouse_genomes_project 19 55017286 55053890 + MGP_AJ_P0052245 Trub1 protein_coding protein_coding MGP_AJ_T0051233.1 MGP_AJ_G0024877.1 mouse_genomes_project 19 9116299 9125936 - MGP_AJ_P0051233 protein_coding protein_coding MGP_AJ_T0101978.1 MGP_AJ_G0039807.1 mouse_genomes_project 19 36477922 36508492 + transcribed_unprocessed_pseudogene processed_transcript MGP_AJ_T0101979.1 MGP_AJ_G0039807.1 mouse_genomes_project 19 36477952 36508449 + transcribed_unprocessed_pseudogene transcribed_unprocessed_pseudogene MGP_AJ_T0101980.1 MGP_AJ_G0039807.1 mouse_genomes_project 19 36505236 36508740 + transcribed_unprocessed_pseudogene processed_transcript MGP_AJ_T0051623.1 MGP_AJ_G0025049.1 mouse_genomes_project 19 33927604 33932521 - MGP_AJ_P0051623 Ppp1r3c protein_coding protein_coding MGP_AJ_T0051152.1 MGP_AJ_G0024839.1 mouse_genomes_project 19 7997705 8030849 - MGP_AJ_P0051152 Ms4a13 protein_coding protein_coding MGP_AJ_T0051153.1 MGP_AJ_G0024839.1 mouse_genomes_project 19 7997706 8030863 - MGP_AJ_P0051153 Ms4a13 protein_coding protein_coding MGP_AJ_T0051812.1 MGP_AJ_G0025119.1 mouse_genomes_project 19 39492073 39506876 + Zfyve27 protein_coding retained_intron MGP_AJ_T0051813.1 MGP_AJ_G0025119.1 mouse_genomes_project 19 39498681 39523732 + MGP_AJ_P0051813 Zfyve27 protein_coding protein_coding MGP_AJ_T0051814.1 MGP_AJ_G0025119.1 mouse_genomes_project 19 39498708 39520868 + MGP_AJ_P0051814 Zfyve27 protein_coding protein_coding MGP_AJ_T0051815.1 MGP_AJ_G0025119.1 mouse_genomes_project 19 39498814 39501332 + Zfyve27 protein_coding retained_intron MGP_AJ_T0051816.1 MGP_AJ_G0025119.1 mouse_genomes_project 19 39507972 39513309 + MGP_AJ_P0051816 Zfyve27 protein_coding protein_coding MGP_AJ_T0051817.1 MGP_AJ_G0025119.1 mouse_genomes_project 19 39512634 39513978 + Zfyve27 protein_coding retained_intron MGP_AJ_T0051818.1 MGP_AJ_G0025119.1 mouse_genomes_project 19 39514484 39519665 + Zfyve27 protein_coding retained_intron MGP_AJ_T0051819.1 MGP_AJ_G0025119.1 mouse_genomes_project 19 39514758 39520045 + Zfyve27 protein_coding retained_intron MGP_AJ_T0013399.1 MGP_AJ_G0011494.1 mouse_genomes_project 19 51284193 51284613 - processed_pseudogene processed_pseudogene MGP_AJ_T0052195.1 MGP_AJ_G0025241.1 mouse_genomes_project 19 54071385 54090357 - MGP_AJ_P0052195 Dclre1a protein_coding nonsense_mediated_decay MGP_AJ_T0052196.1 MGP_AJ_G0025241.1 mouse_genomes_project 19 54071387 54089373 - Dclre1a protein_coding retained_intron MGP_AJ_T0052197.1 MGP_AJ_G0025241.1 mouse_genomes_project 19 54071387 54090435 - MGP_AJ_P0052197 Dclre1a protein_coding protein_coding MGP_AJ_T0052198.1 MGP_AJ_G0025241.1 mouse_genomes_project 19 54071800 54079600 - Dclre1a protein_coding retained_intron MGP_AJ_T0052199.1 MGP_AJ_G0025241.1 mouse_genomes_project 19 54082228 54083763 - Dclre1a protein_coding processed_transcript MGP_AJ_T0052200.1 MGP_AJ_G0025241.1 mouse_genomes_project 19 54089075 54090244 - MGP_AJ_P0052200 Dclre1a protein_coding protein_coding MGP_AJ_T0007064.1 MGP_AJ_G0005799.1 mouse_genomes_project 19 2666349 2687121 - Neat1 lincRNA lincRNA MGP_AJ_T0007065.1 MGP_AJ_G0005799.1 mouse_genomes_project 19 2683949 2687119 - Neat1 lincRNA lincRNA MGP_AJ_T0007066.1 MGP_AJ_G0005799.1 mouse_genomes_project 19 2685323 2686902 - Neat1 lincRNA lincRNA MGP_AJ_T0052142.1 MGP_AJ_G0025228.1 mouse_genomes_project 19 51461999 51552475 + MGP_AJ_P0052142 Shoc2 protein_coding unknown_likely_coding MGP_AJ_T0007111.1 MGP_AJ_G0005833.1 mouse_genomes_project 19 48163203 48267904 + Gm26629 lincRNA lincRNA MGP_AJ_T0051858.1 MGP_AJ_G0025133.1 mouse_genomes_project 19 41096909 41117281 - MGP_AJ_P0051858 Cox15 protein_coding protein_coding MGP_AJ_T0051859.1 MGP_AJ_G0025133.1 mouse_genomes_project 19 41102250 41104308 - Cox15 protein_coding retained_intron MGP_AJ_T0051481.1 MGP_AJ_G0024997.1 mouse_genomes_project 19 26383349 26386732 - Rln1 protein_coding retained_intron MGP_AJ_T0051482.1 MGP_AJ_G0024997.1 mouse_genomes_project 19 26383886 26386850 - MGP_AJ_P0051482 Rln1 protein_coding protein_coding MGP_AJ_T0051531.1 MGP_AJ_G0025011.1 mouse_genomes_project 19 27635739 27639544 - MGP_AJ_P0051531 Dkk1 protein_coding protein_coding MGP_AJ_T0011483.1 MGP_AJ_G0009605.1 mouse_genomes_project 19 36136802 36136922 + Gm25838 misc_RNA misc_RNA MGP_AJ_T0050786.1 MGP_AJ_G0024729.1 mouse_genomes_project 19 3265994 3281861 + MGP_AJ_P0050786 Rasgrp2 protein_coding protein_coding MGP_AJ_T0050787.1 MGP_AJ_G0024729.1 mouse_genomes_project 19 3266110 3270288 + MGP_AJ_P0050787 Rasgrp2 protein_coding protein_coding MGP_AJ_T0050788.1 MGP_AJ_G0024729.1 mouse_genomes_project 19 3266400 3270140 + MGP_AJ_P0050788 Rasgrp2 protein_coding protein_coding MGP_AJ_T0050789.1 MGP_AJ_G0024729.1 mouse_genomes_project 19 3266518 3269229 + MGP_AJ_P0050789 Rasgrp2 protein_coding protein_coding MGP_AJ_T0050790.1 MGP_AJ_G0024729.1 mouse_genomes_project 19 3266522 3270133 + MGP_AJ_P0050790 Rasgrp2 protein_coding protein_coding MGP_AJ_T0050791.1 MGP_AJ_G0024729.1 mouse_genomes_project 19 3266528 3270992 + MGP_AJ_P0050791 Rasgrp2 protein_coding nonsense_mediated_decay MGP_AJ_T0050792.1 MGP_AJ_G0024729.1 mouse_genomes_project 19 3266571 3269101 + Rasgrp2 protein_coding processed_transcript MGP_AJ_T0050793.1 MGP_AJ_G0024729.1 mouse_genomes_project 19 3266767 3270293 + MGP_AJ_P0050793 Rasgrp2 protein_coding protein_coding MGP_AJ_T0050794.1 MGP_AJ_G0024729.1 mouse_genomes_project 19 3267181 3269085 + Rasgrp2 protein_coding processed_transcript MGP_AJ_T0050795.1 MGP_AJ_G0024729.1 mouse_genomes_project 19 3267187 3281856 + MGP_AJ_P0050795 Rasgrp2 protein_coding nonsense_mediated_decay MGP_AJ_T0050796.1 MGP_AJ_G0024729.1 mouse_genomes_project 19 3267201 3271076 + MGP_AJ_P0050796 Rasgrp2 protein_coding protein_coding MGP_AJ_T0050797.1 MGP_AJ_G0024729.1 mouse_genomes_project 19 3267216 3281867 + MGP_AJ_P0050797 Rasgrp2 protein_coding protein_coding MGP_AJ_T0050798.1 MGP_AJ_G0024729.1 mouse_genomes_project 19 3267218 3271479 + MGP_AJ_P0050798 Rasgrp2 protein_coding protein_coding MGP_AJ_T0050799.1 MGP_AJ_G0024729.1 mouse_genomes_project 19 3267237 3281866 + MGP_AJ_P0050799 Rasgrp2 protein_coding protein_coding MGP_AJ_T0050800.1 MGP_AJ_G0024729.1 mouse_genomes_project 19 3267277 3270267 + MGP_AJ_P0050800 Rasgrp2 protein_coding protein_coding MGP_AJ_T0050801.1 MGP_AJ_G0024729.1 mouse_genomes_project 19 3268349 3269101 + Rasgrp2 protein_coding processed_transcript MGP_AJ_T0050802.1 MGP_AJ_G0024729.1 mouse_genomes_project 19 3268356 3270293 + MGP_AJ_P0050802 Rasgrp2 protein_coding protein_coding MGP_AJ_T0050803.1 MGP_AJ_G0024729.1 mouse_genomes_project 19 3268372 3270293 + MGP_AJ_P0050803 Rasgrp2 protein_coding protein_coding MGP_AJ_T0050804.1 MGP_AJ_G0024729.1 mouse_genomes_project 19 3268373 3270293 + Rasgrp2 protein_coding processed_transcript MGP_AJ_T0050805.1 MGP_AJ_G0024729.1 mouse_genomes_project 19 3269572 3271626 + Rasgrp2 protein_coding retained_intron MGP_AJ_T0050806.1 MGP_AJ_G0024729.1 mouse_genomes_project 19 3271236 3273716 + Rasgrp2 protein_coding retained_intron MGP_AJ_T0050807.1 MGP_AJ_G0024729.1 mouse_genomes_project 19 3271395 3276323 + Rasgrp2 protein_coding retained_intron MGP_AJ_T0050808.1 MGP_AJ_G0024729.1 mouse_genomes_project 19 3271481 3280696 + Rasgrp2 protein_coding retained_intron MGP_AJ_T0050809.1 MGP_AJ_G0024729.1 mouse_genomes_project 19 3275059 3281862 + Rasgrp2 protein_coding processed_transcript MGP_AJ_T0050709.1 MGP_AJ_G0024718.1 mouse_genomes_project 19 3004273 3035669 + Batf2 protein_coding processed_transcript MGP_AJ_T0050710.1 MGP_AJ_G0024718.1 mouse_genomes_project 19 3027634 3035672 + MGP_AJ_P0050710 Batf2 protein_coding protein_coding MGP_AJ_T0050711.1 MGP_AJ_G0024718.1 mouse_genomes_project 19 3027649 3034964 + Batf2 protein_coding retained_intron MGP_AJ_T0050712.1 MGP_AJ_G0024718.1 mouse_genomes_project 19 3027649 3034563 + Batf2 protein_coding retained_intron MGP_AJ_T0050713.1 MGP_AJ_G0024718.1 mouse_genomes_project 19 3027655 3034954 + Batf2 protein_coding processed_transcript MGP_AJ_T0050714.1 MGP_AJ_G0024718.1 mouse_genomes_project 19 3027684 3034563 + Batf2 protein_coding retained_intron MGP_AJ_T0100998.1 MGP_AJ_G0038964.1 mouse_genomes_project 19 32368621 32368753 + Gm24006 snoRNA snoRNA MGP_AJ_T0010304.1 MGP_AJ_G0008426.1 mouse_genomes_project 19 31894892 31894996 + Gm27476 miRNA miRNA MGP_AJ_T0051390.1 MGP_AJ_G0024967.1 mouse_genomes_project 19 20733083 20925417 + MGP_AJ_P0051390 Apba1 protein_coding protein_coding MGP_AJ_T0052048.1 MGP_AJ_G0025191.1 mouse_genomes_project 19 44115815 44129056 + MGP_AJ_P0052048 Borcs7 protein_coding protein_coding MGP_AJ_T0010280.1 MGP_AJ_G0008402.1 mouse_genomes_project 19 2029181 2029281 - Gm27468 miRNA miRNA MGP_AJ_T0050834.1 MGP_AJ_G0024735.1 mouse_genomes_project 19 3670372 3671624 + MGP_AJ_P0050834 Trmt112 protein_coding protein_coding MGP_AJ_T0050835.1 MGP_AJ_G0024735.1 mouse_genomes_project 19 3670421 3671603 + MGP_AJ_P0050835 Trmt112 protein_coding protein_coding MGP_AJ_T0050836.1 MGP_AJ_G0024735.1 mouse_genomes_project 19 3670838 3671603 + MGP_AJ_P0050836 Trmt112 protein_coding protein_coding MGP_AJ_T0011480.1 MGP_AJ_G0009602.1 mouse_genomes_project 19 30063306 30063665 - Gm22482 misc_RNA misc_RNA MGP_AJ_T0100985.1 MGP_AJ_G0038951.1 mouse_genomes_project 19 5677289 5677356 + Gm23246 snoRNA snoRNA MGP_AJ_T0051434.1 MGP_AJ_G0024984.1 mouse_genomes_project 19 24242849 24276079 + Vldlr protein_coding retained_intron MGP_AJ_T0051435.1 MGP_AJ_G0024984.1 mouse_genomes_project 19 24243385 24276186 + MGP_AJ_P0051435 Vldlr protein_coding protein_coding MGP_AJ_T0051436.1 MGP_AJ_G0024984.1 mouse_genomes_project 19 24243385 24261240 + MGP_AJ_P0051436 Vldlr protein_coding protein_coding MGP_AJ_T0051437.1 MGP_AJ_G0024984.1 mouse_genomes_project 19 24243722 24258137 + Vldlr protein_coding processed_transcript MGP_AJ_T0051438.1 MGP_AJ_G0024984.1 mouse_genomes_project 19 24243722 24280554 + MGP_AJ_P0051438 Vldlr protein_coding protein_coding MGP_AJ_T0051439.1 MGP_AJ_G0024984.1 mouse_genomes_project 19 24243722 24276051 + MGP_AJ_P0051439 Vldlr protein_coding protein_coding MGP_AJ_T0051440.1 MGP_AJ_G0024984.1 mouse_genomes_project 19 24243823 24276087 + MGP_AJ_P0051440 Vldlr protein_coding nonsense_mediated_decay MGP_AJ_T0051441.1 MGP_AJ_G0024984.1 mouse_genomes_project 19 24265194 24270152 + MGP_AJ_P0051441 Vldlr protein_coding protein_coding MGP_AJ_T0050358.1 MGP_AJ_G0024610.1 mouse_genomes_project 19 882750 886849 + MGP_AJ_P0050358 Cabp2 protein_coding protein_coding MGP_AJ_T0050359.1 MGP_AJ_G0024610.1 mouse_genomes_project 19 883660 888509 + MGP_AJ_P0050359 Cabp2 protein_coding protein_coding MGP_AJ_T0050360.1 MGP_AJ_G0024610.1 mouse_genomes_project 19 884662 888513 + MGP_AJ_P0050360 Cabp2 protein_coding protein_coding MGP_AJ_T0050361.1 MGP_AJ_G0024610.1 mouse_genomes_project 19 884691 888513 + MGP_AJ_P0050361 Cabp2 protein_coding protein_coding MGP_AJ_T0050362.1 MGP_AJ_G0024610.1 mouse_genomes_project 19 887647 888510 + Cabp2 protein_coding processed_transcript MGP_AJ_T0099723.1 MGP_AJ_G0037689.1 mouse_genomes_project 19 12591621 12591728 + Gm24319 snRNA snRNA MGP_AJ_T0017706.1 MGP_AJ_G0015360.1 mouse_genomes_project 19 23786808 23842374 - 4931403E22Rik processed_transcript processed_transcript MGP_AJ_T0051258.1 MGP_AJ_G0024889.1 mouse_genomes_project 19 9600089 9634420 - MGP_AJ_P0051258 Zfp91 protein_coding nonsense_mediated_decay MGP_AJ_T0051260.1 MGP_AJ_G0024889.1 mouse_genomes_project 19 9603449 9634420 - MGP_AJ_P0051260 Zfp91 protein_coding protein_coding MGP_AJ_T0051261.1 MGP_AJ_G0024889.1 mouse_genomes_project 19 9607945 9628704 - Zfp91 protein_coding retained_intron MGP_AJ_T0007068.1 MGP_AJ_G0005801.1 mouse_genomes_project 19 3518882 3520366 + Gm14968 lincRNA lincRNA MGP_AJ_T0051218.1 MGP_AJ_G0024862.1 mouse_genomes_project 19 8733443 8734514 - MGP_AJ_P0051218 protein_coding protein_coding MGP_AJ_T0051322.1 MGP_AJ_G0024940.1 mouse_genomes_project 19 14257270 14290511 - MGP_AJ_P0051322 Gcnt1 protein_coding protein_coding MGP_AJ_T0051323.1 MGP_AJ_G0024940.1 mouse_genomes_project 19 14257272 14273347 - MGP_AJ_P0051323 Gcnt1 protein_coding protein_coding MGP_AJ_T0051324.1 MGP_AJ_G0024940.1 mouse_genomes_project 19 14263397 14290511 - Gcnt1 protein_coding retained_intron MGP_AJ_T0050274.1 MGP_AJ_G0024593.1 mouse_genomes_project 19 223070 346254 - MGP_AJ_P0050274 Ppp6r3 protein_coding protein_coding MGP_AJ_T0050275.1 MGP_AJ_G0024593.1 mouse_genomes_project 19 223070 346254 - MGP_AJ_P0050275 Ppp6r3 protein_coding protein_coding MGP_AJ_T0050276.1 MGP_AJ_G0024593.1 mouse_genomes_project 19 223070 346254 - MGP_AJ_P0050276 Ppp6r3 protein_coding protein_coding MGP_AJ_T0051262.1 MGP_AJ_G0024891.1 mouse_genomes_project 19 9636860 9673556 + MGP_AJ_P0051262 Lpxn protein_coding protein_coding MGP_AJ_T0052026.1 MGP_AJ_G0025183.1 mouse_genomes_project 19 43775499 43794302 + MGP_AJ_P0052026 Mfsd13a protein_coding protein_coding MGP_AJ_T0052027.1 MGP_AJ_G0025183.1 mouse_genomes_project 19 43775570 43794292 + MGP_AJ_P0052027 Mfsd13a protein_coding nonsense_mediated_decay MGP_AJ_T0052028.1 MGP_AJ_G0025183.1 mouse_genomes_project 19 43785725 43794292 + Mfsd13a protein_coding retained_intron MGP_AJ_T0051181.1 MGP_AJ_G0024848.1 mouse_genomes_project 19 8311176 8325323 + MGP_AJ_P0051181 Ms4a6c protein_coding protein_coding MGP_AJ_T0051182.1 MGP_AJ_G0024848.1 mouse_genomes_project 19 8311235 8314535 + Ms4a6c protein_coding retained_intron MGP_AJ_T0003868.1 MGP_AJ_G0003459.1 mouse_genomes_project 19 35996469 36000325 - Gm28991 antisense antisense MGP_AJ_T0052267.1 MGP_AJ_G0025260.1 mouse_genomes_project 19 56562881 56665067 - MGP_AJ_P0052267 Shtn1 protein_coding protein_coding MGP_AJ_T0050843.1 MGP_AJ_G0024738.1 mouse_genomes_project 19 3686988 3696811 - MGP_AJ_P0050843 Kcnk4 protein_coding protein_coding MGP_AJ_T0050504.1 MGP_AJ_G0024650.1 mouse_genomes_project 19 1803280 1808897 - MGP_AJ_P0050504 Npas4 protein_coding protein_coding MGP_AJ_T0052286.1 MGP_AJ_G0025271.1 mouse_genomes_project 19 58364217 58394019 - MGP_AJ_P0052286 Eif3a protein_coding protein_coding MGP_AJ_T0052294.1 MGP_AJ_G0025273.1 mouse_genomes_project 19 58442890 58467739 - MGP_AJ_P0052294 Sfxn4 protein_coding nonsense_mediated_decay MGP_AJ_T0052295.1 MGP_AJ_G0025273.1 mouse_genomes_project 19 58444359 58467791 - MGP_AJ_P0052295 Sfxn4 protein_coding protein_coding MGP_AJ_T0052296.1 MGP_AJ_G0025273.1 mouse_genomes_project 19 58444369 58467736 - MGP_AJ_P0052296 Sfxn4 protein_coding nonsense_mediated_decay MGP_AJ_T0052297.1 MGP_AJ_G0025273.1 mouse_genomes_project 19 58444584 58467751 - MGP_AJ_P0052297 Sfxn4 protein_coding unknown_likely_coding MGP_AJ_T0013403.1 MGP_AJ_G0011498.1 mouse_genomes_project 19 58784151 58784489 + processed_pseudogene processed_pseudogene MGP_AJ_T0051244.1 MGP_AJ_G0024885.1 mouse_genomes_project 19 9464055 9483905 + MGP_AJ_P0051244 Glyat protein_coding protein_coding MGP_AJ_T0051245.1 MGP_AJ_G0024885.1 mouse_genomes_project 19 9464262 9479166 + Glyat protein_coding retained_intron MGP_AJ_T0051246.1 MGP_AJ_G0024885.1 mouse_genomes_project 19 9464262 9465837 + Glyat protein_coding processed_transcript MGP_AJ_T0051247.1 MGP_AJ_G0024885.1 mouse_genomes_project 19 9464280 9484567 + MGP_AJ_P0051247 Glyat protein_coding protein_coding MGP_AJ_T0051248.1 MGP_AJ_G0024885.1 mouse_genomes_project 19 9470149 9481080 + Glyat protein_coding processed_transcript MGP_AJ_T0007100.1 MGP_AJ_G0005825.1 mouse_genomes_project 19 40966283 40967834 - Gm20467 lincRNA lincRNA MGP_AJ_T0050767.1 MGP_AJ_G0024727.1 mouse_genomes_project 19 3228880 3243221 + MGP_AJ_P0050767 Sf1 protein_coding protein_coding MGP_AJ_T0050768.1 MGP_AJ_G0024727.1 mouse_genomes_project 19 3228909 3242394 + MGP_AJ_P0050768 Sf1 protein_coding protein_coding MGP_AJ_T0050769.1 MGP_AJ_G0024727.1 mouse_genomes_project 19 3229000 3241703 + MGP_AJ_P0050769 Sf1 protein_coding protein_coding MGP_AJ_T0050770.1 MGP_AJ_G0024727.1 mouse_genomes_project 19 3229112 3231146 + Sf1 protein_coding retained_intron MGP_AJ_T0050771.1 MGP_AJ_G0024727.1 mouse_genomes_project 19 3229112 3242393 + MGP_AJ_P0050771 Sf1 protein_coding nonsense_mediated_decay MGP_AJ_T0050772.1 MGP_AJ_G0024727.1 mouse_genomes_project 19 3229112 3242387 + MGP_AJ_P0050772 Sf1 protein_coding protein_coding MGP_AJ_T0050773.1 MGP_AJ_G0024727.1 mouse_genomes_project 19 3229153 3233975 + Sf1 protein_coding retained_intron MGP_AJ_T0050774.1 MGP_AJ_G0024727.1 mouse_genomes_project 19 3229384 3237384 + MGP_AJ_P0050774 Sf1 protein_coding nonsense_mediated_decay MGP_AJ_T0050775.1 MGP_AJ_G0024727.1 mouse_genomes_project 19 3229747 3237810 + MGP_AJ_P0050775 Sf1 protein_coding protein_coding MGP_AJ_T0050776.1 MGP_AJ_G0024727.1 mouse_genomes_project 19 3235309 3237283 + Sf1 protein_coding processed_transcript MGP_AJ_T0050777.1 MGP_AJ_G0024727.1 mouse_genomes_project 19 3235902 3236885 + Sf1 protein_coding retained_intron MGP_AJ_T0050778.1 MGP_AJ_G0024727.1 mouse_genomes_project 19 3237603 3238112 + Sf1 protein_coding retained_intron MGP_AJ_T0050779.1 MGP_AJ_G0024727.1 mouse_genomes_project 19 3238811 3241845 + MGP_AJ_P0050779 Sf1 protein_coding protein_coding MGP_AJ_T0050780.1 MGP_AJ_G0024727.1 mouse_genomes_project 19 3239200 3241703 + MGP_AJ_P0050780 Sf1 protein_coding protein_coding MGP_AJ_T0050781.1 MGP_AJ_G0024727.1 mouse_genomes_project 19 3239319 3240971 + MGP_AJ_P0050781 Sf1 protein_coding protein_coding MGP_AJ_T0010322.1 MGP_AJ_G0008444.1 mouse_genomes_project 19 50487656 50487757 - Mir6407 miRNA miRNA MGP_AJ_T0052281.1 MGP_AJ_G0025269.1 mouse_genomes_project 19 58124559 58183493 - MGP_AJ_P0052281 Cacul1 protein_coding protein_coding MGP_AJ_T0052282.1 MGP_AJ_G0025269.1 mouse_genomes_project 19 58124559 58183493 - MGP_AJ_P0052282 Cacul1 protein_coding protein_coding MGP_AJ_T0052283.1 MGP_AJ_G0025269.1 mouse_genomes_project 19 58124559 58183493 - MGP_AJ_P0052283 Cacul1 protein_coding protein_coding MGP_AJ_T0052284.1 MGP_AJ_G0025269.1 mouse_genomes_project 19 58128889 58182871 - MGP_AJ_P0052284 Cacul1 protein_coding unknown_likely_coding MGP_AJ_T0051777.1 MGP_AJ_G0025108.1 mouse_genomes_project 19 39244031 39254398 - MGP_AJ_P0051777 Exosc1 protein_coding protein_coding MGP_AJ_T0051778.1 MGP_AJ_G0025108.1 mouse_genomes_project 19 39244031 39254398 - MGP_AJ_P0051778 Exosc1 protein_coding protein_coding MGP_AJ_T0051673.1 MGP_AJ_G0025067.1 mouse_genomes_project 19 35486138 35535022 + MGP_AJ_P0051673 protein_coding protein_coding MGP_AJ_T0051674.1 MGP_AJ_G0025067.1 mouse_genomes_project 19 35486262 35521890 + MGP_AJ_P0051674 protein_coding nonsense_mediated_decay MGP_AJ_T0051675.1 MGP_AJ_G0025067.1 mouse_genomes_project 19 35486357 35487486 + protein_coding retained_intron MGP_AJ_T0051676.1 MGP_AJ_G0025067.1 mouse_genomes_project 19 35486406 35490619 + protein_coding retained_intron MGP_AJ_T0051677.1 MGP_AJ_G0025067.1 mouse_genomes_project 19 35486981 35525186 + protein_coding retained_intron MGP_AJ_T0010296.1 MGP_AJ_G0008418.1 mouse_genomes_project 19 13231451 13231564 - Mir496b miRNA miRNA MGP_AJ_T0051449.1 MGP_AJ_G0024988.1 mouse_genomes_project 19 25297631 25719313 - MGP_AJ_P0051449 Glis3 protein_coding protein_coding MGP_AJ_T0051450.1 MGP_AJ_G0024988.1 mouse_genomes_project 19 25301125 25366440 - Glis3 protein_coding processed_transcript MGP_AJ_T0051451.1 MGP_AJ_G0024988.1 mouse_genomes_project 19 25301142 25718902 - MGP_AJ_P0051451 Glis3 protein_coding nonsense_mediated_decay MGP_AJ_T0051452.1 MGP_AJ_G0024988.1 mouse_genomes_project 19 25301204 25339822 - Glis3 protein_coding processed_transcript MGP_AJ_T0051453.1 MGP_AJ_G0024988.1 mouse_genomes_project 19 25301751 25579676 - Glis3 protein_coding retained_intron MGP_AJ_T0051454.1 MGP_AJ_G0024988.1 mouse_genomes_project 19 25302729 25323287 - Glis3 protein_coding retained_intron MGP_AJ_T0051455.1 MGP_AJ_G0024988.1 mouse_genomes_project 19 25389701 25719313 - MGP_AJ_P0051455 Glis3 protein_coding protein_coding MGP_AJ_T0051456.1 MGP_AJ_G0024988.1 mouse_genomes_project 19 25571086 25717926 - MGP_AJ_P0051456 Glis3 protein_coding nonsense_mediated_decay MGP_AJ_T0051457.1 MGP_AJ_G0024988.1 mouse_genomes_project 19 25571086 25705897 - MGP_AJ_P0051457 Glis3 protein_coding protein_coding MGP_AJ_T0051458.1 MGP_AJ_G0024988.1 mouse_genomes_project 19 25571086 25717926 - MGP_AJ_P0051458 Glis3 protein_coding protein_coding MGP_AJ_T0050854.1 MGP_AJ_G0024741.1 mouse_genomes_project 19 3716010 3731984 - MGP_AJ_P0050854 Plcb3 protein_coding protein_coding MGP_AJ_T0100997.1 MGP_AJ_G0038963.1 mouse_genomes_project 19 24739233 24739365 - Gm24782 snoRNA snoRNA MGP_AJ_T0050458.1 MGP_AJ_G0024634.1 mouse_genomes_project 19 1432789 1435854 - MGP_AJ_P0050458 Rce1 protein_coding protein_coding MGP_AJ_T0013371.1 MGP_AJ_G0011466.1 mouse_genomes_project 19 2250404 2250599 - processed_pseudogene processed_pseudogene MGP_AJ_T0007112.1 MGP_AJ_G0005834.1 mouse_genomes_project 19 50556430 50564593 + 1700054A03Rik lincRNA lincRNA MGP_AJ_T0007113.1 MGP_AJ_G0005834.1 mouse_genomes_project 19 50556464 50564593 + 1700054A03Rik lincRNA lincRNA MGP_AJ_T0052300.1 MGP_AJ_G0025276.1 mouse_genomes_project 19 58656375 58748253 - MGP_AJ_P0052300 Zfp950 protein_coding nonsense_mediated_decay MGP_AJ_T0052301.1 MGP_AJ_G0025276.1 mouse_genomes_project 19 58720281 58748298 - MGP_AJ_P0052301 Zfp950 protein_coding nonsense_mediated_decay MGP_AJ_T0052302.1 MGP_AJ_G0025276.1 mouse_genomes_project 19 58721838 58722673 - Zfp950 protein_coding retained_intron MGP_AJ_T0052303.1 MGP_AJ_G0025276.1 mouse_genomes_project 19 58722423 58748275 - MGP_AJ_P0052303 Zfp950 protein_coding protein_coding MGP_AJ_T0052304.1 MGP_AJ_G0025276.1 mouse_genomes_project 19 58722442 58748277 - MGP_AJ_P0052304 Zfp950 protein_coding nonsense_mediated_decay MGP_AJ_T0052305.1 MGP_AJ_G0025276.1 mouse_genomes_project 19 58722573 58748228 - MGP_AJ_P0052305 Zfp950 protein_coding nonsense_mediated_decay MGP_AJ_T0052306.1 MGP_AJ_G0025276.1 mouse_genomes_project 19 58723431 58748220 - MGP_AJ_P0052306 Zfp950 protein_coding protein_coding MGP_AJ_T0052307.1 MGP_AJ_G0025276.1 mouse_genomes_project 19 58724735 58724906 - MGP_AJ_P0052307 Zfp950 protein_coding protein_coding MGP_AJ_T0052308.1 MGP_AJ_G0025276.1 mouse_genomes_project 19 58729014 58748248 - MGP_AJ_P0052308 Zfp950 protein_coding protein_coding MGP_AJ_T0052309.1 MGP_AJ_G0025276.1 mouse_genomes_project 19 58734349 58734925 - MGP_AJ_P0052309 Zfp950 protein_coding protein_coding MGP_AJ_T0051362.1 MGP_AJ_G0024954.1 mouse_genomes_project 19 18373652 18454674 - MGP_AJ_P0051362 Gda protein_coding protein_coding MGP_AJ_T0051363.1 MGP_AJ_G0024954.1 mouse_genomes_project 19 18401159 18454772 - Gda protein_coding retained_intron MGP_AJ_T0051406.1 MGP_AJ_G0024977.1 mouse_genomes_project 19 21975810 22191729 + MGP_AJ_P0051406 Dock8 protein_coding protein_coding MGP_AJ_T0050877.1 MGP_AJ_G0024754.1 mouse_genomes_project 19 3994385 4009932 - MGP_AJ_P0050877 Naa40 protein_coding protein_coding MGP_AJ_T0051756.1 MGP_AJ_G0025096.1 mouse_genomes_project 19 38384107 38398907 - MGP_AJ_P0051756 Opalin protein_coding protein_coding MGP_AJ_T0010303.1 MGP_AJ_G0008425.1 mouse_genomes_project 19 31526381 31526490 - Gm23060 miRNA miRNA MGP_AJ_T0051757.1 MGP_AJ_G0025097.1 mouse_genomes_project 19 38405774 38521582 - MGP_AJ_P0051757 Tll2 protein_coding protein_coding MGP_AJ_T0051758.1 MGP_AJ_G0025097.1 mouse_genomes_project 19 38405774 38521582 - MGP_AJ_P0051758 Tll2 protein_coding protein_coding